BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780134|ref|YP_003064547.1| phage-related
integrase/recombinase [Candidatus Liberibacter asiaticus str. psy62]
         (348 letters)

Database: nr 
           13,984,884 sequences; 4,792,584,752 total letters

Searching..................................................done


Results from round 1


>gi|254780134|ref|YP_003064547.1| phage-related integrase/recombinase [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254039811|gb|ACT56607.1| phage-related integrase/recombinase [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|317120848|gb|ADV02669.1| phage-related integrase/recombinase [Candidatus Liberibacter
           asiaticus]
          Length = 348

 Score =  724 bits (1870), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/348 (100%), Positives = 348/348 (100%)

Query: 1   MTPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60
           MTPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY
Sbjct: 1   MTPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
           INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR
Sbjct: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
           SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ
Sbjct: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
           QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG
Sbjct: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADA 300
           FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADA
Sbjct: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADA 300

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
           GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP
Sbjct: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348


>gi|240850345|ref|YP_002971738.1| phage-related integrase/recombinase [Bartonella grahamii as4aup]
 gi|240267468|gb|ACS51056.1| phage-related integrase/recombinase [Bartonella grahamii as4aup]
          Length = 347

 Score =  233 bits (593), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 129/341 (37%), Positives = 192/341 (56%), Gaps = 13/341 (3%)

Query: 8   PPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHEST-FIPAYMSALTGSTPKREYINSPRK 66
           PP + KE TRHGKII+Y R GHG+RIR+   + +  F+  Y SAL     + + +  P+ 
Sbjct: 6   PPHLVKEVTRHGKIIWYVRIGHGKRIRIRGTYGTQEFVDNYKSALA----ELQGLILPKS 61

Query: 67  KPTTL-----KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121
           K   L      WL+ +Y  S HW SLA  ++   E    ++    G+  YR+I   HI +
Sbjct: 62  KTGKLVEGSFAWLLKQYFNSVHWHSLAKATKRQRELILMKVCDAIGNIPYREIKKSHITA 121

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK-RKTEGIRPWTKEDMQ 180
           GVE RK  P++A  FL ++  LF WA+ QE +  NP L ++RP     +G   WT+ED++
Sbjct: 122 GVERRKEKPTAAQNFLKALNGLFNWAIDQELLENNPALGIKRPPLNNKDGFAVWTEEDVE 181

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP-- 238
           ++   WS GS  R+  + LLY+GLR  D+ R G + +++NI  +KT+K+     V LP  
Sbjct: 182 KYYHHWSHGSHERVWIDVLLYTGLRRGDAVRIGWKDVKDNIIHLKTEKSKFQTDVFLPIL 241

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISA 298
               + L + PIG ETF    +  K+    F   F+     AG+ KSAHG+RK +AT +A
Sbjct: 242 PELAETLKIGPIGNETFICGKNGNKLVKESFGNLFREACNAAGIKKSAHGLRKLAATRAA 301

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
           ++GAT  +L A +GW   + A  YTK ADR RL I+  +++
Sbjct: 302 NSGATVSQLKAIFGWTDDNMASLYTKSADRKRLAIEAIKKL 342


>gi|323136183|ref|ZP_08071265.1| integrase family protein [Methylocystis sp. ATCC 49242]
 gi|322398257|gb|EFY00777.1| integrase family protein [Methylocystis sp. ATCC 49242]
          Length = 341

 Score =  225 bits (573), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 124/327 (37%), Positives = 190/327 (58%), Gaps = 5/327 (1%)

Query: 8   PPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHEST-FIPAYMSALTGSTPKREYINSPRK 66
           PP++  E +RHG+ ++YFRKG G R+RLP  + S  F  AY +A+ G    ++   +   
Sbjct: 6   PPYLHSEISRHGRRVWYFRKGKGPRVRLPDAYGSDDFWSAYHAAMAGEVAPKKPAGA--- 62

Query: 67  KPTTLKWLISEYR-KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
           K  +L+WLI +YR +S+HW  LA+ +R   E  F  +I  +GD  Y  +T   I  G + 
Sbjct: 63  KSGSLRWLIDKYRAESSHWSQLALETRQRRERIFQAVIEAAGDKAYTAVTRAKIVEGRDR 122

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           R+ TPS+A  FL +   LF WA   ++VA NPC  V+   ++T+G RPWT+ D+++F++ 
Sbjct: 123 RRATPSAANHFLKARAGLFAWAFEADHVATNPCEGVKMLSQRTDGHRPWTEADIERFEAR 182

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
           W  G++ RLA   L+Y+GLR  D  + G QH+++ + S++T+KT T + + +     +++
Sbjct: 183 WPVGTRERLALAILMYTGLRRGDVVKLGRQHVRDGVISLRTEKTNTPVHLPMLPALAEII 242

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAH 305
             +P G   F      + + A  FS  F      AGV+ S HG+RK +AT +A+AGAT  
Sbjct: 243 DKSPTGDLNFIATKSGRPICADAFSAMFLCACRAAGVDASPHGLRKVAATRAANAGATVA 302

Query: 306 ELMATYGWKTVDQAETYTKGADRIRLG 332
           EL A +GW     A  YTK ADR RL 
Sbjct: 303 ELEALFGWTGGQMASHYTKEADRARLA 329


>gi|319405810|emb|CBI79435.1| phage-related integrase/recombinase [Bartonella sp. AR 15-3]
          Length = 345

 Score =  222 bits (565), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 122/341 (35%), Positives = 192/341 (56%), Gaps = 13/341 (3%)

Query: 8   PPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHEST-FIPAYMSALTGSTPKREYINSPRK 66
           PP + KE TRHGK+I+Y R GHG+R+R+   + +  FI  Y  A+     + + +  P+ 
Sbjct: 6   PPHLVKEITRHGKVIWYVRIGHGQRVRIYGTYGAQEFIDNYKRAIA----QLQGLILPKS 61

Query: 67  KPTTL-----KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121
           KP  L      WL+ +Y  S +W SLA  ++   E    ++    G   Y+ I  KHI +
Sbjct: 62  KPGKLVEGSFAWLLKQYFNSVNWYSLAKTTQRQKELILMKVCDSVGSIPYKAINKKHIIA 121

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT-EGIRPWTKEDMQ 180
           GVE RK TP+SA  FL ++  LF WA+ Q  +  NP L+++RP  K  +G   WT+ED++
Sbjct: 122 GVERRKETPASARNFLKALNGLFTWAIEQNLLDENPTLNIKRPPLKNKDGFPAWTEEDIE 181

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP-- 238
           ++   W  G+  R+  + +LY+GLR  D+ R G + +++NI  +KT+K+     V LP  
Sbjct: 182 KYYKQWPHGTHERVWIDVILYTGLRRGDAMRIGWKDVKDNIIHLKTEKSKFQTDVFLPIL 241

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISA 298
               + L + PIG ETF      +K+    F   F+     A + KSAHG+RK +AT +A
Sbjct: 242 PELAETLKIGPIGDETFICGKGNKKLTKESFGNLFREACNTASIKKSAHGLRKLAATRAA 301

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
           ++GAT  +L A +GW   + A  YTK ADR +L +++ +++
Sbjct: 302 NSGATVSQLKAIFGWTNDNMASLYTKSADRKKLALESIKKL 342


>gi|163868166|ref|YP_001609374.1| phage-related integrase/recombinase [Bartonella tribocorum CIP
           105476]
 gi|161017821|emb|CAK01379.1| phage-related integrase/recombinase [Bartonella tribocorum CIP
           105476]
          Length = 345

 Score =  220 bits (560), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 125/341 (36%), Positives = 190/341 (55%), Gaps = 13/341 (3%)

Query: 8   PPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHEST-FIPAYMSALTGSTPKREYINSPRK 66
           PP++ KE TRH KII+Y R GHG+RIR+   + +  F+  Y SAL     + + I  P+ 
Sbjct: 6   PPYLLKEVTRHNKIIWYVRIGHGKRIRIRGTYGTQEFVDNYKSALA----ELQGIIPPKP 61

Query: 67  KPTTL-----KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121
           K   L      WL+ +Y  S+ W  LA  ++   E    ++    G+  Y+ I  KHI +
Sbjct: 62  KTGKLIEGSFAWLLKQYFNSSDWYCLAKATKRQKELILMKVCDSIGNIPYQAIEKKHIVA 121

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK-RKTEGIRPWTKEDMQ 180
           GVE RK TP+ A  FL ++  LF WA+ Q  +  NP + V+RP     +G   WT++D++
Sbjct: 122 GVERRKETPAMARNFLKALNGLFNWAIDQGLLESNPTVGVKRPALNNKDGFAVWTEDDVE 181

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP-- 238
           ++   WS G+  R+  + LLY+GLR  D+ R G +++++NI  +KT+K+     V LP  
Sbjct: 182 KYYQRWSHGTHERVWIDVLLYTGLRRGDAVRIGWKNVKDNIIHLKTEKSKYQTDVFLPIL 241

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISA 298
               + L + PIG ETF  +   QK     F   F+     AG+ KSAHG+RK +AT +A
Sbjct: 242 PELAETLKIGPIGNETFICSKTNQKFIKESFGNAFRDACNAAGIKKSAHGLRKLAATRAA 301

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
           ++GAT  +L A +GW     A  YTK ADR RL ++  +++
Sbjct: 302 NSGATVSQLKAIFGWTEDQMASLYTKSADRKRLALEAIKKL 342


>gi|85716638|ref|ZP_01047608.1| Integrase /recombinase [Nitrobacter sp. Nb-311A]
 gi|85696639|gb|EAQ34527.1| Integrase /recombinase [Nitrobacter sp. Nb-311A]
          Length = 371

 Score =  210 bits (535), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 119/334 (35%), Positives = 177/334 (52%), Gaps = 11/334 (3%)

Query: 6   RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHEST-FIPAYMSALTGSTPKREYINSP 64
           R PP++  ERTRHG  ++Y R+ HG RIRL   + S  F   Y +AL  +      + S 
Sbjct: 4   RRPPYLHSERTRHGARVWYVRRHHGGRIRLRADYGSAAFWQEYRAALDAAPA---LVASA 60

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
             K  TLKW +  YR S+ W +L++ +R   E+ F ++I   G     +I    IR G E
Sbjct: 61  IGKSGTLKWALDRYRASSAWATLSLATRRQRENIFRRVIETGGKTPLTEIDDDVIRDGRE 120

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE--RPKRKTEGIRPWTKEDMQQF 182
            R  TP  A  F+ +MR    W V ++ +  NP   V+        +G   WT+ ++ +F
Sbjct: 121 RRAATPHQANSFIKAMRAFCAWCVEEKLMTKNPTSGVKLLTGPNDADGFHTWTQAELDRF 180

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK-----TGTIITVEL 237
           ++ W  G++ RLAF+ LLY+GLR  D+ R G QH+++ + SI+T+K      G ++ + +
Sbjct: 181 EARWKVGTRERLAFDVLLYTGLRRGDAVRVGRQHVKDGVISIRTEKHARGKAGELVAIPI 240

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATIS 297
                  LA TP G+  F IN   Q      F  WF+    +A    SAHG+RK  AT +
Sbjct: 241 LAPLAASLAATPTGELEFLINERGQPWRKESFGNWFRDVCREANCPGSAHGLRKAGATRA 300

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           A+ GA+  +LMA +GW T   A+ YT+ ADR RL
Sbjct: 301 AEKGASERQLMAIFGWTTGKMAQHYTRSADRARL 334


>gi|49475466|ref|YP_033507.1| integrase /recombinase [Bartonella henselae str. Houston-1]
 gi|49238272|emb|CAF27486.1| Integrase /recombinase [Bartonella henselae str. Houston-1]
          Length = 345

 Score =  208 bits (529), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 121/341 (35%), Positives = 190/341 (55%), Gaps = 9/341 (2%)

Query: 6   RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHEST-FIPAYMSAL---TGSTPKREYI 61
           R PP + KE TRHGK+++Y R GHG R R+   + +  F+ +Y  A+      TPKR  +
Sbjct: 4   RRPPHLVKETTRHGKVVWYVRIGHGPRYRIEGTYGTQEFVDSYTLAIKQAQNGTPKR--M 61

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121
              R    +  WL+ +Y +S  W + + +++       + + +  G+  Y+ I  +HI  
Sbjct: 62  TQTRLTEGSFDWLLHQYLQSMQWHNQSESTKKVKYRILNNVSKHIGNHAYKSIEKRHILD 121

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR-KTEGIRPWTKEDMQ 180
            V+ R+ TP++A  FLTS+  LF WAV    +  NP L+++ PK   +EG++PW +ED+ 
Sbjct: 122 AVDRRRATPAAAKHFLTSLNGLFNWAVDNALLNRNPALNIKAPKSLNSEGLQPWLEEDID 181

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP-- 238
           ++   WS GS  R+  + LLY+GLR  D+ R G + +++NI  +KT+K+     V LP  
Sbjct: 182 KYYHHWSHGSHERVWIDVLLYTGLRRGDAVRIGWKDVKDNIIHLKTEKSQFKTDVFLPIL 241

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISA 298
               + L + PIG ETF       K+    F   F+     AG+ KSAHG+RK +AT +A
Sbjct: 242 PELTETLQIGPIGDETFICGKSGNKLVKESFGNLFREACNAAGIKKSAHGLRKLAATRAA 301

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
           +AGAT  ++ A +GW     A  YTK ADR RL I+  +++
Sbjct: 302 NAGATVSQMKALFGWTEDKMASLYTKTADRKRLAIEAIKKL 342


>gi|307942454|ref|ZP_07657805.1| integrase family protein [Roseibium sp. TrichSKD4]
 gi|307774740|gb|EFO33950.1| integrase family protein [Roseibium sp. TrichSKD4]
          Length = 356

 Score =  206 bits (524), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 122/340 (35%), Positives = 184/340 (54%), Gaps = 14/340 (4%)

Query: 3   PSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHE----STFIPAYMSALTGSTPKR 58
           P  RLP  V  E++RHG++ Y+FR GHG RIRLP  +     S F+ AY SAL G+ P  
Sbjct: 2   PKSRLPHVVV-EKSRHGRVKYFFRIGHGPRIRLPDDYSTAQASDFMQAYRSALAGTPPPL 60

Query: 59  EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH 118
               S R    TL WL  +Y++SA + SL+  ++ +  +    I+ KSG    R IT + 
Sbjct: 61  PKARS-RHAQNTLGWLFDQYQQSAKFKSLSEGTQRARANLIKGIVSKSGKAQLRDITERA 119

Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEY----VAINPCLSVERPKRKTEGIRPW 174
           +R G E R  TP +A  FL +M+  F W +        +  +P  +V++   KTEG   W
Sbjct: 120 VRQGRERRSATPEAANNFLKTMKSAFAWGIDSGLLDGIIETDPTANVKKITTKTEGFHTW 179

Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234
           T ++++ ++S    G+  RLA + L+Y+GLR  D  + G QH+++ + + KT K G  + 
Sbjct: 180 TVDEIEAYESTHDIGTTARLALDLLIYTGLRRGDVVKVGRQHVKDGVLNYKTGKNGEWVH 239

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQK--MNATQFSIWFKAKATKAGVNKS-AHGVRK 291
           + +       +  +P    T F+  +K K   +A  F  WF  +  +AGV K  AHG+RK
Sbjct: 240 LPILPALQNSIDASPTNDLT-FLQTEKGKPFSSAASFGNWFAKRCLEAGVEKGRAHGLRK 298

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
             A ++A+ GAT  +LMA +GW T D A  YTK A R +L
Sbjct: 299 AGAVLAAERGATTSQLMALFGWTTEDMATLYTKRASRSKL 338


>gi|319409101|emb|CBI82745.1| phage-related integrase/recombinase [Bartonella schoenbuchensis R1]
          Length = 347

 Score =  202 bits (515), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 123/339 (36%), Positives = 183/339 (53%), Gaps = 9/339 (2%)

Query: 8   PPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHEST-FIPAYMSAL---TGSTPKREYINS 63
           PP + KE TRHGK I+Y R GHG+R R+   + +  F+  Y  AL       P++  I  
Sbjct: 6   PPHLIKEITRHGKTIWYVRIGHGQRYRVYGTYGTQEFVDNYTLALKEAQNGLPRQ--IKR 63

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
            R    +  WL+ +Y +S  W + A +++   +   + I +  G   Y+ I  +HI   V
Sbjct: 64  TRLMEGSFDWLMHQYLQSMQWHNQAESTKKVKQRILNNISQHIGTCSYKSIEKQHILDAV 123

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR-KTEGIRPWTKEDMQQF 182
           E R+ TP++A  FLT++  LF WAV    +  NP  +++ PK   TEG  PW +ED+ ++
Sbjct: 124 ERRRETPAAARHFLTALNGLFNWAVDNSLLHRNPAFNIKPPKSFNTEGFSPWLEEDIDKY 183

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP--DG 240
              W  G+  R+  + LLY+GLR  D  R G + + +NI  +KT+K+     V LP    
Sbjct: 184 HQRWPLGTHERVWIDVLLYTGLRRGDVVRVGWKDVTDNIIHLKTEKSKFQTDVFLPILPE 243

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADA 300
             K L   PIG ETF    + +K+    F   F+     AG+ KSAHG+RK +AT +A+A
Sbjct: 244 LAKTLEAGPIGNETFICGKEGKKLTKESFGNLFRKACNAAGIKKSAHGLRKLAATRAANA 303

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
           GAT  +L A +GW   D A  YTK ADR RL I+  +++
Sbjct: 304 GATVSQLKAIFGWTEDDMASLYTKTADRKRLAIEAIKKL 342


>gi|319408877|emb|CBI82534.1| phage-related integrase/recombinase [Bartonella schoenbuchensis R1]
          Length = 347

 Score =  202 bits (514), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 127/342 (37%), Positives = 184/342 (53%), Gaps = 13/342 (3%)

Query: 8   PPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHEST-FIPAYMSALTGSTPKREYINSPRK 66
           PP + KE TRHGK I+Y R GHG+R R+   + +  F+  Y  AL+    + +    P+ 
Sbjct: 6   PPHLVKEITRHGKTIWYVRIGHGQRRRVHGVYGTQEFVDDYKKALS----ELQGYKLPKS 61

Query: 67  KPTTLK-----WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121
           KP  L      WL+ +Y  S  W +LA  ++   E    ++    GD  Y+ I   HI +
Sbjct: 62  KPGKLVEGSFIWLLKQYFNSLTWHNLAHATKRQKELILMKVSDAIGDIPYKAIKKSHIIA 121

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT-EGIRPWTKEDMQ 180
           GVE RK TP++A  FL ++  LFKWA+ Q  +  NP   V+RP  K  +G   W +ED+ 
Sbjct: 122 GVERRKETPANARNFLKAVNSLFKWAIEQGLLEDNPAAGVKRPSLKNKDGFPAWIEEDIN 181

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP-- 238
           ++   W  G+  R+  + LLY+GLR  D  R G + + +N+  +KT+K+     V LP  
Sbjct: 182 KYYQQWPLGTHERVWVDVLLYTGLRRGDVVRIGWKDVTDNVIHLKTEKSKFQTDVFLPIL 241

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISA 298
               K L   P+G ETF      +K+    F   FK    +AGV KSAHG+RK +AT +A
Sbjct: 242 PELAKTLETGPVGNETFICGKGGKKLTKETFGNLFKNACNEAGVKKSAHGLRKLAATRAA 301

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
           +AGAT  +L A +GW   D A  YTK ADR RL I+  +++ 
Sbjct: 302 NAGATVAQLKAIFGWTEDDMASLYTKTADRKRLAIEAIKKLQ 343


>gi|240850538|ref|YP_002971937.1| phage-related integrase/recombinase [Bartonella grahamii as4aup]
 gi|240267661|gb|ACS51249.1| phage-related integrase/recombinase [Bartonella grahamii as4aup]
          Length = 345

 Score =  200 bits (509), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 119/342 (34%), Positives = 187/342 (54%), Gaps = 11/342 (3%)

Query: 6   RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHEST-FIPAYMSAL----TGSTPKREY 60
           R PP + +ERTRHGK+I+Y R GHG R R+   + +  F+  Y  A+     GS+  +  
Sbjct: 4   RRPPHLVRERTRHGKVIWYVRIGHGPRFRIEGTYGTQEFVDNYTLAIKQAQNGSSKTKR- 62

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
               R    +  WL+ +Y +S  W + + +++       + + +  GD  Y+ I  +HI 
Sbjct: 63  --RTRLTEGSFDWLLHQYLQSMQWHNQSESTKKVKYRILNNVSKHIGDRAYKSINKQHIL 120

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR-KTEGIRPWTKEDM 179
             V+ R+ TP++A  FLTS+  LF WAV    +  NP  +++ PK   +EG+ PW +ED+
Sbjct: 121 EAVDRRRETPAAAKHFLTSLNGLFNWAVDNALLNRNPAFNIKAPKSLNSEGLLPWREEDI 180

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP- 238
            ++   WS G+  R+  + LLY+GLR  D+ R G + +++NI  +KT+K+     V LP 
Sbjct: 181 DKYYHRWSHGTHERVWIDVLLYTGLRRGDAVRIGWKDVKDNIIYLKTEKSQFKTDVFLPI 240

Query: 239 -DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATIS 297
                + L + PIG ETF       K+    F   F+     AG+ KSAHG+RK +AT +
Sbjct: 241 LPELEETLKIGPIGNETFICGKGGNKLVKESFGNLFREACNAAGIKKSAHGLRKLAATRA 300

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
           A+AGAT  ++ A +GW     A  YTK ADR RL I+  +++
Sbjct: 301 ANAGATVSQMKALFGWTEDKMASLYTKTADRKRLAIEAIKKL 342


>gi|163867673|ref|YP_001608874.1| phage-related integrase/recombinase [Bartonella tribocorum CIP
           105476]
 gi|161017321|emb|CAK00879.1| phage-related integrase/recombinase [Bartonella tribocorum CIP
           105476]
          Length = 345

 Score =  198 bits (503), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 120/342 (35%), Positives = 185/342 (54%), Gaps = 11/342 (3%)

Query: 6   RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHEST-FIPAYMSAL----TGSTPKREY 60
           R PP++  ERTRHGKII+Y R GHG R R+   + +  F+  Y  AL     G++ KR+ 
Sbjct: 4   RRPPYLVCERTRHGKIIWYVRIGHGPRFRIEGTYGTQEFVDNYTLALKQAQNGTSKKRK- 62

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
               R    +  WL+ +Y +S  W + + +++       + + +  G+  Y+ I   HI 
Sbjct: 63  --QTRLVEGSFDWLLHQYLRSIQWHNQSESTKKVKYRILNNVSKHIGERAYKSIGKHHIL 120

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR-KTEGIRPWTKEDM 179
             V+ R+ TP++A  FLTS+  LF WAV    +  NP  +++ PK    EG  PW +ED+
Sbjct: 121 DAVDRRRATPAAAKHFLTSLNGLFNWAVDNALLNRNPAFNIKPPKSFNAEGFTPWLEEDV 180

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP- 238
           +++   WS  +  R+  + LLY+GLR  D+ R G + +++NI  +KT+K+     V LP 
Sbjct: 181 EKYYHHWSVDTHERVWVDVLLYTGLRRGDAVRIGWKDVKDNIIHLKTEKSQFKTDVFLPI 240

Query: 239 -DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATIS 297
                K L   P+G ETF       K+    F   F+     AG+ KSAHG+RK +AT +
Sbjct: 241 LPELAKTLEAGPVGDETFICGKGGNKLVKESFGNLFREACNAAGIKKSAHGLRKLAATRA 300

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
           A+AGAT  ++ A +GW     A  YTK ADR RL I+  +++
Sbjct: 301 ANAGATVSQMKALFGWSEDKMASLYTKTADRKRLAIEAIKKL 342


>gi|319406688|emb|CBI80325.1| phage-related integrase/recombinase [Bartonella sp. 1-1C]
          Length = 349

 Score =  198 bits (503), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 121/341 (35%), Positives = 187/341 (54%), Gaps = 13/341 (3%)

Query: 8   PPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHEST-FIPAYMSALTGSTPKREYINSPRK 66
           PP + K+ T+HGKI++Y R GHG+R R+   + +  FI  Y S+L     +   I  P+ 
Sbjct: 8   PPHLVKQITQHGKIVWYVRIGHGQRRRVHGTYGTQEFIDNYKSSLA----ELHGIIPPKP 63

Query: 67  KPTTL-----KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121
           KP  L      WL+ +Y  S +W +LA  ++   E    ++    G+  YR+I   HI +
Sbjct: 64  KPGKLIEGSFAWLLKQYFNSINWHNLAKGTKRQRELILMKVYDTIGNIPYREIKKAHIIA 123

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK-RKTEGIRPWTKEDMQ 180
           GVE RK  PS+A  FL ++  LF WA+ Q  +  NP + V++P     +G   WT+ED++
Sbjct: 124 GVERRKDKPSTAQNFLKALNGLFNWAIEQGLLENNPTVGVKKPALNNKDGFAAWTEEDVE 183

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP-- 238
           ++   WS G+  R+    LLY+GLR  D+ R G +  ++NI  +KT+K+     V LP  
Sbjct: 184 KYYQQWSVGTYERVWINVLLYTGLRRGDAVRIGWKDTKDNIIHLKTEKSKFQTDVFLPIL 243

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISA 298
               + L + P+G+ETF       K+    F   F+     AG+ KSAHG+RK +AT +A
Sbjct: 244 PELAETLKIGPVGEETFICGKSGNKLAKESFGNLFREACNAAGIKKSAHGLRKLAATRAA 303

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
           +AGAT  +L A +GW     A  YTK ADR +L ++  +++
Sbjct: 304 NAGATVSQLKAIFGWTEDKMASLYTKSADRKKLALEAIKKL 344


>gi|319408072|emb|CBI81725.1| phage-related integrase/recombinase [Bartonella schoenbuchensis R1]
          Length = 347

 Score =  197 bits (501), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 125/342 (36%), Positives = 183/342 (53%), Gaps = 13/342 (3%)

Query: 8   PPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHEST-FIPAYMSALTGSTPKREYINSPRK 66
           PP + KE TRHGK I+Y R GHG+R R+   + +  F+  Y  AL+    + +    P+ 
Sbjct: 6   PPHLVKEITRHGKTIWYVRIGHGQRRRVHGVYGTQEFVDDYKKALS----ELQGYKLPKS 61

Query: 67  KPTTLK-----WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121
           KP  L      WL+ +Y  S  W +LA  ++   E    ++    GD  Y+ I   HI +
Sbjct: 62  KPGKLVEGSFIWLLKQYFNSLTWHNLAHATKRQKELILMKVSDAIGDIPYKAIKKSHIIA 121

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT-EGIRPWTKEDMQ 180
           GVE RK TP++A  FL ++  LFKWA+ Q  +  NP   V+RP  K  +G   W +ED+ 
Sbjct: 122 GVERRKETPANARNFLKAVNSLFKWAIEQGLLEDNPAAGVKRPSLKNKDGFPAWIEEDIN 181

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP-- 238
           ++   W  G+  R+  + LLY+GLR  D  R G + + +N+  +KT+K+     V LP  
Sbjct: 182 KYYQQWPLGTHERVWVDVLLYTGLRRGDVVRIGWKDVTDNVIHLKTEKSKFQTDVFLPIL 241

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISA 298
               K L   PIG ETF      +K+    F   F+    +AGV KSAHG+RK +AT +A
Sbjct: 242 PELTKTLETGPIGDETFICGKGGKKLTKEAFGNLFRDACNEAGVKKSAHGLRKLAATRAA 301

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
           +AGAT  +L A +GW     A  YTK ADR RL +++  ++ 
Sbjct: 302 NAGATVAQLKAIFGWTEDRMASLYTKTADRKRLALESIEKLQ 343


>gi|315121974|ref|YP_004062463.1| integrase family protein [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|315122942|ref|YP_004063431.1| integrase family protein [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|313495376|gb|ADR51975.1| integrase family protein [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|313496344|gb|ADR52943.1| integrase family protein [Candidatus Liberibacter solanacearum
           CLso-ZC1]
          Length = 299

 Score =  196 bits (499), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 104/277 (37%), Positives = 161/277 (58%), Gaps = 3/277 (1%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           T KWLI +YR S H+ SL   +R   ++ F QII+ SGD  + KIT +H+++ V+ R   
Sbjct: 23  TFKWLIDQYRLSGHFQSLNPTTRRVRDNLFYQIIKDSGDIPFAKITRRHLQNAVDRRSSK 82

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
           PS AI FL ++  +FKWA   E +  NP + V RP  +T G+  WT E ++ ++      
Sbjct: 83  PSVAISFLKAISPVFKWAETCELITKNPVIGVCRPPIRTIGMHTWTMEQVEVYRKHHPIN 142

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP 249
           +  RLA E +L+ GLR SD  R G QH+++++ SI T+KTG  + V + +   K L    
Sbjct: 143 TMARLALELMLFLGLRRSDVIRIGKQHVKDSVLSIHTKKTGKQVHVPIFEDLQKCLDAVG 202

Query: 250 IGKETFFINNDKQKMNAT-QFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHE 306
           + + TF I    +  +++  F  WF+ +  +AG+     AHG+RK  ATI+A+AGA+ HE
Sbjct: 203 VDRGTFLITAIGKPFSSSGSFGNWFRDRCKEAGLPDKCRAHGLRKAGATIAANAGASPHE 262

Query: 307 LMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343
           LMA +GW   D A+ YT+  +  +L  K ++ I+  V
Sbjct: 263 LMAMFGWSKTDMADLYTREVNSKKLAYKAAKMIADCV 299


>gi|319408665|emb|CBI82320.1| phage-related integrase/recombinase [Bartonella schoenbuchensis R1]
          Length = 347

 Score =  196 bits (497), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 127/341 (37%), Positives = 184/341 (53%), Gaps = 13/341 (3%)

Query: 8   PPFVTKERTRHGKIIYYFRKGHG--RRIRLPYPHESTFIPAY---MSALTGST-PKREYI 61
           PP + KE TRHGK I+Y R  HG  RR+   Y  +  F+  Y   +S L G T PK +  
Sbjct: 6   PPHLVKEITRHGKTIWYVRISHGPRRRVHGVYGTQE-FVDDYKKALSELQGYTLPKSK-- 62

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121
            S +    +  WL+ +Y  S  W  L+  ++   E    ++    GD  Y+ I   HI +
Sbjct: 63  -SDKFVEGSFIWLLKQYFDSVTWHELSHVTKRQKELILMKVSDAIGDIPYKAIKKDHIVA 121

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT-EGIRPWTKEDMQ 180
           GVE RK TP++A  FL ++  LFKWA+ Q  +  NP   V+RP  K  EG   WT+ED+ 
Sbjct: 122 GVERRKETPATARNFLKAVNGLFKWAIEQGLLEDNPAAGVKRPSLKNKEGFPAWTEEDIN 181

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP-- 238
           ++   W  G+  R+  + LLY+GLR  D  R G + + +NI  +KT+K+     V LP  
Sbjct: 182 KYYQQWPLGTHERVWLDVLLYTGLRRGDVVRIGWKDVTDNIIHLKTEKSKFQTDVFLPIL 241

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISA 298
               K L   PIG ETF      +K+    F   F+    +AG+ KSAHG+RK +AT +A
Sbjct: 242 PELTKTLETGPIGDETFICGKGGKKLTKETFGNLFRDACNEAGIKKSAHGLRKLAATRAA 301

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
           +AGAT  +L A +GW   + A  YTK ADR RL +++ +++
Sbjct: 302 NAGATVSQLKAIFGWTDDEMASLYTKTADRKRLALESIKKL 342


>gi|254503745|ref|ZP_05115896.1| site-specific recombinase, phage integrase family protein
           [Labrenzia alexandrii DFL-11]
 gi|222439816|gb|EEE46495.1| site-specific recombinase, phage integrase family protein
           [Labrenzia alexandrii DFL-11]
          Length = 347

 Score =  194 bits (492), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 119/344 (34%), Positives = 188/344 (54%), Gaps = 14/344 (4%)

Query: 3   PSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHE----STFIPAYMSALTGS-TPK 57
           P  RLP  + +E++RHG++ ++FR G G RIRLP  ++    S F+ AY +ALTGS  PK
Sbjct: 2   PKRRLP-HLRREKSRHGRVKWFFRLGDGPRIRLPDDYDLDPASGFMQAYQAALTGSDVPK 60

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK 117
           +     P+    TL WL+ +Y +SA + +LA  +R S+      I  KSG      IT +
Sbjct: 61  KPRSRYPQ---NTLGWLLDQYEQSAKFAALAKATRQSYGYQIKAIREKSGSVRLIDITER 117

Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVR----QEYVAINPCLSVERPKRKTEGIRP 173
            IR   E+R  TP++A  FL  M+V F W +      + +  +P   V+R   KTEG   
Sbjct: 118 SIRRAREARAATPNAANAFLKVMKVAFAWGMESGLLDDVIDRDPAKEVKRIDIKTEGHHT 177

Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233
           WT E+++++++ W  G+  RLA + L  +GLR  D  + G QH++     ++  KTG  I
Sbjct: 178 WTVEEIERYEARWPLGTMERLALDLLACTGLRREDVYQIGRQHIKGGEIHVRASKTGGWI 237

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQ-KMNATQFSIWFKAKATKAGVNKSAHGVRKF 292
            + +     + +  T  G+ T  +N   Q  +NA  F  WF     +A V   AHG+RK 
Sbjct: 238 YLPVLPALQESIDATKTGELTLLLNTKGQPHLNAKAFGKWFGKACERAEVPGRAHGMRKA 297

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
           +AT+ A+ GAT H++MA +GW +   A  YT+ A+R ++ +++ 
Sbjct: 298 AATLVAERGATVHQMMAIFGWDSERMAIHYTRKANRKKISLEHG 341


>gi|220922490|ref|YP_002497792.1| integrase family protein [Methylobacterium nodulans ORS 2060]
 gi|219947097|gb|ACL57489.1| integrase family protein [Methylobacterium nodulans ORS 2060]
          Length = 346

 Score =  193 bits (491), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 120/329 (36%), Positives = 182/329 (55%), Gaps = 9/329 (2%)

Query: 8   PPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHES-TFIPAYMSAL-TGSTPKREYINSPR 65
           PP + +E TRHGK ++Y R G G+RIR+   + S  F   Y  A+ +G  P ++    P 
Sbjct: 6   PPHLVREITRHGKPVWYVRVGQGKRIRMRETYGSPEFWRDYRLAVESGQLPAKQ--AGP- 62

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
             P TL WLI+ Y  S  W  L+  +R    +    + + +G+   R I  K I +G + 
Sbjct: 63  -NPGTLSWLIARYVASPEWADLSRRTRTGRHAILRAVEKTAGNELLRHIDRKAIVTGRDR 121

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE--GIRPWTKEDMQQFK 183
           R+ TPS+A  FL +MR LF WAV  E++  NP + V+   RK    G   WT+E+++QF+
Sbjct: 122 RRDTPSAANNFLYAMRALFAWAVEHEHIDQNPAVGVKPLARKNADVGFHTWTEEEVRQFE 181

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
           + W  G+Q RLA + LLY+GLR SD    G QH++ + F+I+T+KTG ++   +      
Sbjct: 182 ARWPVGTQERLALDLLLYTGLRRSDVVVLGRQHVKGDTFTIRTKKTGAVVVRPILPPLAA 241

Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGAT 303
            +A  P G   F + +         F+ WF+    KAGV   +HG+RK +A  +A+AGA+
Sbjct: 242 SIAAAPTGDLAFLVTSRGTPWVDDSFAKWFRRACEKAGVPGRSHGLRKAAARRAAEAGAS 301

Query: 304 AHELMATYGWKTVD-QAETYTKGADRIRL 331
             EL A +GW+    ++ TYT+ AD  RL
Sbjct: 302 EMELNALFGWRPGSRESATYTRAADVERL 330


>gi|146340241|ref|YP_001205289.1| putative phage integrase/recombinase [Bradyrhizobium sp. ORS278]
 gi|146193047|emb|CAL77058.1| Putative Phage Integrase/recombinase [Bradyrhizobium sp. ORS278]
          Length = 345

 Score =  191 bits (486), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 115/334 (34%), Positives = 178/334 (53%), Gaps = 11/334 (3%)

Query: 8   PPFVTKERTRHGKIIYY--FRKGHGR-RIRLPYPHESTFIPAYMSALTGSTPK-REYINS 63
           PP + +  +RHGK+ ++   R+G  + RIR  Y   + F+ AY +A+TG   K    I +
Sbjct: 9   PPHLQRGVSRHGKVYWFDQMRRGAPKTRIRGEY-GSAEFMAAYDAAVTGGAAKPTPEIKA 67

Query: 64  PRKKPTTLKWLISEYRKSAHWGS-LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122
           P+    TL+W    YR+S  W S L+  +R   E+    +++ +       I    I  G
Sbjct: 68  PK---GTLEWAWMLYRQSGAWQSGLSQATRRQRENIMKHVLKTAASTPLSDIDAAAIADG 124

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR-KTEGIRPWTKEDMQQ 181
           ++ R  TPS A  FL +M   F W  R + V+ NPC   E PKR KT G + W+ +D++ 
Sbjct: 125 IDRRAKTPSQAKNFLQTMNQFFAWLKRAKIVSENPCDGAELPKRPKTGGFKKWSLDDVEL 184

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241
           ++  W  G++ R+  +  +Y+GLR  D+   G QH++N + S++T+K G  + + L D  
Sbjct: 185 YEKRWPIGTRERVMLDDYMYTGLRRGDAAVVGKQHVRNGVISLQTEKAGQWVHIPLLDVL 244

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADA 300
            + L   P+G   +      +          FK     AGV +KSAHG+RK +AT +AD 
Sbjct: 245 KRTLEAGPVGDLAWNATKSGRPFAKESLGNAFKDACVAAGVRDKSAHGLRKAAATRAADN 304

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIK 334
           GATAHELMA + W  + +AE YT+ ADR RL  +
Sbjct: 305 GATAHELMAIFRWVDIKEAELYTRAADRKRLAAQ 338


>gi|170739145|ref|YP_001767800.1| integrase family protein [Methylobacterium sp. 4-46]
 gi|168193419|gb|ACA15366.1| integrase family protein [Methylobacterium sp. 4-46]
          Length = 385

 Score =  188 bits (477), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 120/332 (36%), Positives = 177/332 (53%), Gaps = 16/332 (4%)

Query: 8   PPFVTKERTRHGKIIYYFRKGHGRRIRL--PYPHESTFIPAYMSALTGSTPKREYINSPR 65
           PP + +E TRHG +++Y R G G+R R+   Y  E+ F   Y  A+ G         +P+
Sbjct: 10  PPHLVRETTRHGGVVWYVRVGQGKRTRMREAYGTEA-FWRDYRLAVEGKP-----TEAPK 63

Query: 66  KKPT-TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
              T TL WLI +Y +SA W  L+  +R    + +  I   +G    + +    I +G +
Sbjct: 64  AAATGTLSWLIGKYVESAEWSDLSAATRKQRHAVYRAIEETAGTKPAKLVDKASILAGRD 123

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE--RPKRKTEGIRPWTKEDMQQF 182
            R+  P +A  FL +MR LF WAV ++Y+ INP L V+         G   WT+E++ +F
Sbjct: 124 RRRDRPHAANNFLKAMRGLFGWAVDRDYLTINPTLGVKLLTGDNDDAGFHAWTEEELARF 183

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT--VELPDG 240
           +S W  G++ RLAF+ LLY+GLR  D+ R G QH++   FSI+T+KTG ++T  V LP  
Sbjct: 184 ESRWPIGTRQRLAFDLLLYTGLRRGDAVRLGRQHVRGQEFSIRTEKTGAVVTRPVLLP-- 241

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADA 300
             + +  T  G   F             F  WFK    +AGV  S+HG+RK  A  +A+A
Sbjct: 242 LAQSITATKTGGLAFICTERGTPFTKESFGTWFKKVCREAGVPGSSHGLRKAGARRAAEA 301

Query: 301 GATAHELMATYGWKTVD-QAETYTKGADRIRL 331
           GAT  +L A +GW     ++ TYT+ AD  RL
Sbjct: 302 GATEAQLNALFGWAPGSRESATYTRTADNARL 333


>gi|85716138|ref|ZP_01047113.1| Integrase /recombinase [Nitrobacter sp. Nb-311A]
 gi|85696971|gb|EAQ34854.1| Integrase /recombinase [Nitrobacter sp. Nb-311A]
          Length = 316

 Score =  180 bits (457), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 98/291 (33%), Positives = 157/291 (53%), Gaps = 9/291 (3%)

Query: 44  IPAYMSALTGSTPKREYINSPRKKPT--TLKWLISEYRKSAHWGSLAVNSRISFESYFDQ 101
           + AY +AL G  P+      P+ +    TL+WL + YR+S+ W  L+  +R   E+    
Sbjct: 1   MEAYHAALAGERPQ------PKSEAARGTLEWLWTLYRQSSAWADLSAATRKQRENIMKH 54

Query: 102 IIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV 161
           +++ +G      IT   I +G + R  TPS A  F++++R LF WA+    V  +P   V
Sbjct: 55  VLKSAGHQPLSHITRASIVAGRDRRAKTPSQAKNFISTVRGLFGWALDANLVNSDPTAGV 114

Query: 162 ERPKRK-TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220
           +RPKRK +EG + WT++D+++F+  W+ G++ R+ F+  L++GLR  D+ + G QH+++ 
Sbjct: 115 KRPKRKRSEGFQVWTEDDIEKFQKRWNRGTRERVMFDLFLFTGLRRGDAAQVGKQHVKDG 174

Query: 221 IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280
             SI T+KTG  +T+ +       L   P+G   F        M        F+     A
Sbjct: 175 SISINTEKTGIRVTIPIQPELQATLDAGPVGDLAFIATAAGVPMTKESLGNAFRDACRSA 234

Query: 281 GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           G+ KSAHG+RK +AT +A+ GAT  EL A +GW     A  YT+  +R  L
Sbjct: 235 GITKSAHGLRKAAATNAANRGATERELEALFGWVGGQMASLYTRSVNREAL 285


>gi|315497345|ref|YP_004086149.1| integrase family protein [Asticcacaulis excentricus CB 48]
 gi|315415357|gb|ADU11998.1| integrase family protein [Asticcacaulis excentricus CB 48]
          Length = 356

 Score =  177 bits (449), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 109/335 (32%), Positives = 175/335 (52%), Gaps = 13/335 (3%)

Query: 10  FVTKERTRHGKIIYYFRKGHGRRIRLP-YPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
           ++ +   RHG   +YFR+   +++ LP  P    F+ AY +AL+GS  K   I + ++KP
Sbjct: 10  YINRYTDRHGNTRHYFRRPGHKQVALPGKPGSKEFMAAYQAALSGSEGK-PRIGASKEKP 68

Query: 69  TTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIR-------KSGDFDYRKITTKHIR 120
            +   L+S Y  SA +   L   S+ ++    +Q          K+GD   +     H+ 
Sbjct: 69  GSFGALLSVYYDSAKFRNELKPQSQKAYRILLEQFRELEVTPGVKAGDCLVKDFRPAHLN 128

Query: 121 SGV-ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT-EGIRPWTKED 178
             V +     P  A   +  +R +FK A+R E +  NP   VE PK K+ +GI  W+  D
Sbjct: 129 KLVIDGLADRPGQAKNMIKCLRGVFKCAIRNEMIDSNPAREVETPKAKSKDGIPAWSDAD 188

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
           ++ F   W  G++ RLA   LLY+G R SD  R G QH++     ++  KT   + + + 
Sbjct: 189 IEAFCKHWPSGTKQRLALALLLYTGQRRSDVARMGRQHVREGRIHVRQMKTDARLAIRIH 248

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATIS 297
               K L + P G+ TF +    +  +   FSIWFK +A  AGV ++SAHG+RK +  + 
Sbjct: 249 SELQKELDLVPPGQMTFMLTEWGKPFSLAGFSIWFKKQAEDAGVQDRSAHGLRKAAGRML 308

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           A+AG TA ++MA  G +++ +AE YT+ AD+ +LG
Sbjct: 309 AEAGCTAKQIMAILGHQSMTEAERYTRTADQEKLG 343


>gi|220927097|ref|YP_002502399.1| integrase family protein [Methylobacterium nodulans ORS 2060]
 gi|219951704|gb|ACL62096.1| integrase family protein [Methylobacterium nodulans ORS 2060]
          Length = 344

 Score =  174 bits (440), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 111/328 (33%), Positives = 173/328 (52%), Gaps = 14/328 (4%)

Query: 8   PPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHES-TFIPAYMSALTGSTPKREYINSPRK 66
           PP + +E TRHG+ ++Y R G G+RIR+  P+ S  F   Y  A+ G+            
Sbjct: 6   PPHLVREVTRHGRPVWYVRVGQGKRIRMREPYGSPEFWRDYRLAVEGTP----PPAGKGP 61

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
            P TL WL+++Y +SA W   +  +R    + +  I + +G    + I  + I +G + R
Sbjct: 62  APGTLSWLLAKYVESAEWSDFSAATRKQRHAIYRAIEKTAGHEPIKLIDRRAILNGRDRR 121

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE--GIRPWTKEDMQQFKS 184
           +  P +A  F+ +MR LF WAV + YVA +P   V+    + +  G   WT+E++ +F++
Sbjct: 122 RDRPHAANVFIKAMRALFSWAVDRGYVATDPTAGVKMLAGENDDVGFHTWTEEELARFEA 181

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
            W  G++ RLAF+ LLY+GLR  D+ R G QH++ + FSI+T      +T  +       
Sbjct: 182 RWPLGTRERLAFDILLYTGLRRGDAVRLGRQHVKGDAFSIRT------VTRPILPQLAAS 235

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATA 304
           +A T  G   F +  D        F  WF+     A V  SAHG+RK  A  +A+AGAT 
Sbjct: 236 IAATKTGDLAFIVRMDGHPFVKEGFGNWFREACRAAKVPGSAHGLRKAGARRAAEAGATE 295

Query: 305 HELMATYGWKTVD-QAETYTKGADRIRL 331
            +L A +GW+    ++ TYT+ AD  RL
Sbjct: 296 MQLNALFGWRPGSRESATYTRTADNARL 323


>gi|159043537|ref|YP_001532331.1| integrase family protein [Dinoroseobacter shibae DFL 12]
 gi|157911297|gb|ABV92730.1| integrase family protein [Dinoroseobacter shibae DFL 12]
          Length = 370

 Score =  169 bits (427), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 103/331 (31%), Positives = 169/331 (51%), Gaps = 10/331 (3%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRL-PYPHESTFIPAYMSALTGSTPKREYIN 62
           S+RL   V ++  RHG +  Y R+    ++RL   P    F+  Y +A+ G+TP+   + 
Sbjct: 12  SIRLK-HVIEDTDRHGNVRIYLRRPGHLKVRLRSQPGTEDFLAEYRAAMMGATPRAPTVP 70

Query: 63  SPRK-KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121
             R+    + KWL  +Y  SA +  L+  ++       D+I  KSG   Y  +  +H+R 
Sbjct: 71  LDRRGSKGSFKWLCEQYYVSAEYQRLSGRTKYVRRGILDRICEKSGSKPYALMEPRHVRR 130

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
             +     P +A  F+ ++R ++ +AV  E    NP   V   K K +G   WT E+++Q
Sbjct: 131 MRDEMADRPEAANGFVKALRQVYSFAVEYELAQRNPARDVPYLKAKGDGFHSWTMEEVRQ 190

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-----KTQKTGTIITVE 236
           F+     GS+PRLA   +LY+G R SD  R G QH+++   ++     + +K  T+    
Sbjct: 191 FEEHHPIGSKPRLALALMLYTGQRRSDIVRLGPQHIKDGWITLTQAKNRDRKPVTLSIPV 250

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSAT 295
           LP+    +L  TP G   F +    +   +  F  WF+ +  +AG+   SAHG+RK  A 
Sbjct: 251 LPE-LKAVLDATPTGNLAFLVTAFGKPFTSNGFGNWFRKQCDEAGLKHCSAHGLRKAGAA 309

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGA 326
           ++A+ GAT  +LMA +GW T+ +A  YT+ A
Sbjct: 310 LAAENGATERQLMAIFGWTTMKEASRYTRAA 340


>gi|89055356|ref|YP_510807.1| phage integrase [Jannaschia sp. CCS1]
 gi|88864905|gb|ABD55782.1| phage integrase [Jannaschia sp. CCS1]
          Length = 370

 Score =  162 bits (409), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 101/330 (30%), Positives = 164/330 (49%), Gaps = 8/330 (2%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRL-PYPHESTFIPAYMSALTGSTPKREYIN 62
           S+RL   V ++  RHG +  Y R+    ++RL   P    F+  Y  A+ G+TP+     
Sbjct: 12  SIRLK-HVIEDTDRHGNVRLYLRRPGHLKVRLRSQPGTEDFLAEYRVAMMGATPRAPAGP 70

Query: 63  SPRK-KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121
             R+    + KWL  +Y  SA +  L+  ++       D+I  K+G   Y  +  +H+R 
Sbjct: 71  LERRGSKGSFKWLCEQYYVSAEYQRLSGRTKYVRRGILDRICEKNGSKPYALMEPRHVRR 130

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
             +     P +A  F+ ++R ++ +AV  E    NP   V   K K +G   WT E+++Q
Sbjct: 131 MRDEMADRPEAANGFVKALRQVYAFAVEYELAQRNPARDVPYLKAKGDGFHSWTMEEVRQ 190

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT--IITVELPD 239
           F+     GS+PRLA   +LY+G R SD  R G QH+++   ++   K      +T+ +P 
Sbjct: 191 FEDHHPIGSKPRLALALMLYTGQRRSDIVRLGPQHIKDGWITMTQAKNRDRKPVTLSIPV 250

Query: 240 --GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATI 296
                 +L  TP G   F +    +   +  F  WF+ +   AG+   SAHG+RK  A +
Sbjct: 251 LLELKAVLDATPTGNLAFLVTTFGKPFTSNGFGNWFRKQCDVAGLKHCSAHGLRKAGAAL 310

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326
           +A+ GAT  +LMA +GW T+ +A  YT+ A
Sbjct: 311 AAENGATERQLMAIFGWSTMKEASRYTRAA 340


>gi|315122595|ref|YP_004063084.1| phage-related integrase/recombinase [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495997|gb|ADR52596.1| phage-related integrase/recombinase [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 151

 Score =  160 bits (406), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 74/136 (54%), Positives = 100/136 (73%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
           PFV +E+TRHGKIIYYFRKG   R RLP P + +F+PAY+SAL+G   ++  I    K+P
Sbjct: 8   PFVVREKTRHGKIIYYFRKGKDDRTRLPIPSDPSFMPAYLSALSGIPIEQSSIKPVIKEP 67

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128
            T++WLI +YRKS HW SLA+ +R   +  F  II+ SGDF+Y+KIT KHIR G+E RK 
Sbjct: 68  QTMRWLIEQYRKSGHWASLALKTRKRIDQDFSNIIKNSGDFEYKKITAKHIRLGLEHRKS 127

Query: 129 TPSSAIQFLTSMRVLF 144
           TP+SA+ FL+S+R+ +
Sbjct: 128 TPASAVLFLSSIRLSY 143


>gi|146343024|ref|YP_001208072.1| putative phage integrase/recombinase [Bradyrhizobium sp. ORS278]
 gi|146195830|emb|CAL79857.1| Putative phage integrase/recombinase [Bradyrhizobium sp. ORS278]
          Length = 429

 Score =  160 bits (406), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 108/369 (29%), Positives = 176/369 (47%), Gaps = 30/369 (8%)

Query: 9   PFVTKERTRHGKIIYYFRKGH--GRRIRLPYPHEST-FIPAYMSALTGSTPKREYINSPR 65
           P++ KE  RHG+ ++Y R     G+R R+   + ST F   Y  AL G   +      P 
Sbjct: 11  PYLHKEINRHGRTVWYVRNKDVGGKRTRIRGEYGSTEFNRNYDIALAGMFNRPRLAIDPS 70

Query: 66  KK-----PTTLKWLISEYR-KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119
           +        +LKWL  EY+ K+  W  +  ++     S    ++  +G+     I  +HI
Sbjct: 71  EARAKVFDGSLKWLWEEYKAKAPDWREMKASTHKQRNSLMIHVLEANGNKRAAAIQKQHI 130

Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK-RKTEGIRPWTKED 178
             G+  R   PS+A  FLT+MR +F WAV Q+ +A++P   ++ PK  KTEG   W+  D
Sbjct: 131 LDGLGRRAQNPSAARHFLTTMRRMFIWAVAQKILAVDPTEGIKTPKPAKTEGFVTWSDAD 190

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG-----------------VQHLQNNI 221
           ++++   W  G++ R+  +  L++G R  D+   G                 ++ +   I
Sbjct: 191 VRRYYKRWPLGTRERVMIDVYLFTGFRRGDAASFGPADVTEQVQERIGPDGKLEQISVPI 250

Query: 222 FSIKTQKTGTIITVELP--DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK 279
            + + +K    I V  P  D   + L   P+G ET+      + M        FK K   
Sbjct: 251 ITKRLEKGSETIEVTFPMLDVLRRTLEAGPVGTETYIATRQGKPMTKESLGNVFKEKCVA 310

Query: 280 AGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338
           AG+ N+SAHG+RK +AT++A+ GAT  EL A +GW     A  YT+ A+R +L      +
Sbjct: 311 AGLANRSAHGLRKAAATVAAENGATEAELDAIFGWTDRRMASHYTRNANRKKLAYGGVAK 370

Query: 339 ISSVVDSDD 347
           +   + S+D
Sbjct: 371 LERKIGSED 379


>gi|121602161|ref|YP_989344.1| integrase [Bartonella bacilliformis KC583]
 gi|120614338|gb|ABM44939.1| integrase [Bartonella bacilliformis KC583]
          Length = 250

 Score =  154 bits (388), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 91/247 (36%), Positives = 140/247 (56%), Gaps = 3/247 (1%)

Query: 101 QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
           +++   G   Y+ I  KHI +GVE RK TP++A  FL ++  LFKWA+ Q  +  N  L 
Sbjct: 2   KVLDSIGHLSYKVIQKKHIIAGVERRKETPATAQNFLKALNSLFKWAMEQGLLEKNSTLG 61

Query: 161 VERPKRKT-EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN 219
           V+ P  K  +G   W++ D+ ++   W  G+  R+  + LLY+GLR  D+ R G + + +
Sbjct: 62  VKAPPLKNKDGFIVWSEADIDKYYYHWPLGTHERVWIDILLYTGLRRGDAIRIGWKDVTD 121

Query: 220 NIFSIKTQKTGTIITVELP--DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKA 277
           NI  IKT+K+   + V LP      + L + PIG+ETF    + +K+    F   F+   
Sbjct: 122 NIIHIKTEKSKFQMDVFLPILPELAETLEIGPIGEETFICGKNGKKLTKEGFGNVFREAC 181

Query: 278 TKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
             A V KSAHG+RK +AT +A+AGAT  +L A +GW   + A  YTK ADR RL ++  +
Sbjct: 182 NVANVKKSAHGLRKLAATRAANAGATVAQLKAIFGWTEDNMASLYTKSADRKRLALETIK 241

Query: 338 RISSVVD 344
           ++  + D
Sbjct: 242 KLQKMRD 248


>gi|218532644|ref|YP_002423460.1| integrase family protein [Methylobacterium chloromethanicum CM4]
 gi|218524947|gb|ACK85532.1| integrase family protein [Methylobacterium chloromethanicum CM4]
          Length = 405

 Score =  150 bits (378), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 108/348 (31%), Positives = 169/348 (48%), Gaps = 28/348 (8%)

Query: 6   RLPPFVTKERTRHGKIIYYFRKGHGRRIRLP-YPHESTFIPAYMSALTGSTPKREYINSP 64
           RLP F  ++  RHG +  Y R+    ++RLP  P    F+ AY +AL G++      + P
Sbjct: 4   RLPRFCVEDVDRHGNVRVYLRRKDWPKVRLPGVPWTEPFMEAYRAALNGTSE-----DKP 58

Query: 65  RKK----PTTLKWLISEYRKSAHWGSLAVNS----RISFESYFDQIIRKSG-----DFDY 111
           R +    P T KWL  +Y  SA + +L   +    R   E+ +D+  +        DF  
Sbjct: 59  RDRYATLPDTWKWLCQQYVTSARFKTLDPVTQRRRRALLEATYDEPTKPGAKTVFADFPL 118

Query: 112 RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI---NPCLSVERPKRKT 168
            ++T   IR   + +   P  A   + ++R  FKWAV  E VA+   NP   V      +
Sbjct: 119 ARLTPAAIRILRDRKADVPDGANNTVKAIRATFKWAVHPE-VALASHNPARDVGYIATAS 177

Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
           EG   W+ +++++F +    GS+  LA   LL++G R SD+   G QHLQ         K
Sbjct: 178 EGFHTWSVDEVKRFVARHPLGSRAYLALCLLLFAGGRRSDAVLFGRQHLQGAWLRYTQHK 237

Query: 229 --TGTIITVELP--DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-N 283
                 +T+E+P        +   P     F +    +   +  F  WFK +  +AG+ +
Sbjct: 238 GRNAKPMTLEVPVLPALRAAIEACPSQNLAFLVTERGKPFTSNGFGNWFKDRCREAGLLH 297

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            SAHG+RK  AT++A+ GAT  +LMA +GW+T   AE YT+ A++ RL
Sbjct: 298 CSAHGLRKAGATLAAENGATERQLMAMFGWRTSKMAEHYTRKAEQKRL 345


>gi|300023048|ref|YP_003755659.1| integrase family protein [Hyphomicrobium denitrificans ATCC 51888]
 gi|299524869|gb|ADJ23338.1| integrase family protein [Hyphomicrobium denitrificans ATCC 51888]
          Length = 411

 Score =  148 bits (373), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 97/342 (28%), Positives = 170/342 (49%), Gaps = 20/342 (5%)

Query: 10  FVTKERTRHGKIIYYFRKGHGRRIRL-PYPHESTFIPAYMSAL----TGSTPKREYINSP 64
           ++ ++  RHG +  YFR    R+IRL   P    F   Y S +    TG   + E   S 
Sbjct: 13  YLVEDTDRHGNVRIYFRYPGYRKIRLRERPTSPEFAERYSSLIEQFATGCYKEAEK-TSV 71

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRIS----FESYFDQIIRKSGDFDYRKITTKHIR 120
              P TL WL++ +R S  + +L  +++ +     ES  ++ I +     +R      I+
Sbjct: 72  SAVPGTLGWLVTAFRASKDFSNLDPSTQRTRARVLESMLNEPIFQEAAETFRNFPLDRIK 131

Query: 121 -SGVE----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
            S +E     +K  P +A   + ++R +FKWA  +++   NP +S+ +P+  + G   W 
Sbjct: 132 LSDLEVLRDRKKALPGAATDRVKALRPMFKWATSKKHCVANPAISLTKPRLISNGHHTWL 191

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT----GT 231
            ++++ F+     G++  LA   +LY+G R SD+ + G QH Q +       K      T
Sbjct: 192 PDEIEAFQRRHPLGTKAHLALSIMLYTGARRSDAVQLGRQHEQGDSLRWTAHKNRNRYPT 251

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVR 290
           II + +       +   P G   + +    +      F  WF  +  +AG+ + SAHG+R
Sbjct: 252 IIHIPMLQPLAAAIQAGPTGDMVYLLTEYGKPFTIAGFGNWFHDRCIEAGLPQCSAHGLR 311

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           K  +T +A+AGATAH+LMA +GW+++ +AE YT+ A+R ++ 
Sbjct: 312 KAGSTRAAEAGATAHQLMAMFGWRSLAEAEIYTRAAERKKMA 353


>gi|300021643|ref|YP_003754254.1| integrase family protein [Hyphomicrobium denitrificans ATCC 51888]
 gi|299523464|gb|ADJ21933.1| integrase family protein [Hyphomicrobium denitrificans ATCC 51888]
          Length = 716

 Score =  147 bits (370), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 95/342 (27%), Positives = 169/342 (49%), Gaps = 20/342 (5%)

Query: 10  FVTKERTRHGKIIYYFRKGHGRRIRL-PYPHESTFIPAYMSAL----TGSTPKREYINSP 64
           ++ ++  RHG +  YFR    R+IRL   P    F   Y S +    TG   + E   S 
Sbjct: 13  YLVEDTDRHGNVRIYFRYPGYRKIRLRERPTSPEFAERYSSLIEQFATGCYKEAEK-TSV 71

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRIS----FESYFDQIIRKSG-----DFDYRKIT 115
              P TL WL++ +R S  + +L  +++ +     ES  ++ I +       +F   +I 
Sbjct: 72  SAVPGTLGWLVTAFRASKDFSNLDPSTQRTRARVLESMLNEPIFQEAAETFRNFPLDRIK 131

Query: 116 TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
              +    + +K  P +A   + ++R +FKWA  +++   NP +S+ +P+  + G   W 
Sbjct: 132 LSDLEVLRDRKKALPGAATDRVKALRPMFKWATSKKHCVANPAISLTKPRLISNGHHTWL 191

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT----GT 231
            ++++ F+     G++  LA   +LY+G R SD+ + G QH Q +       K      T
Sbjct: 192 PDEIEAFQRRHPLGTKAHLALSIMLYTGARRSDAVQLGRQHEQGDSLRWTAHKNRNRYPT 251

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVR 290
           II + +       +   P G   + +    +      F  WF  +  +AG+ + SAHG+R
Sbjct: 252 IIHIPMLQPLAAAIQAGPTGDMVYLLTEYGKPFTIAGFGNWFHDRCIEAGLPQCSAHGLR 311

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           K  +T +A+AGATAH+LMA +GW+++ +AE YT+ A+R ++ 
Sbjct: 312 KAGSTRAAEAGATAHQLMAMFGWRSLAEAEIYTRAAERKKMA 353


>gi|146340556|ref|YP_001205604.1| putative phage integrase [Bradyrhizobium sp. ORS278]
 gi|146193362|emb|CAL77378.1| putative phage integrase [Bradyrhizobium sp. ORS278]
          Length = 358

 Score =  145 bits (366), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 97/330 (29%), Positives = 160/330 (48%), Gaps = 8/330 (2%)

Query: 6   RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
           RLPP V +   + G + Y +R G G R++LP P    F  AY +A+ G+   R   +  +
Sbjct: 5   RLPPNVERNVVK-GHVYYAYRIGKGPRVKLPDPSSEEFGAAYQAAIQGAAQTRPAPS--Q 61

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV-E 124
             P +L  LI+ Y  S  + SL  +S+  +    + +    G      +T + I + + +
Sbjct: 62  DAPQSLGALIASYYDSDEFRSLRASSKEGYRRRLELMRAAHGHRSVGGLTRERIEAKILK 121

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
              + P + +  L  +R+L + A   +++ +NP   ++R K K   IR WT  ++  F++
Sbjct: 122 PLSNKPGARLDTLKKLRILIRHAKALKWLKVNPSEGIKRGKSKE--IRGWTDNELAAFEA 179

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
            W  G++ R A+E +L  G   +D+         N +F    +KT   + V+  D   + 
Sbjct: 180 RWPFGTRQRAAYEMMLNVGTARADTHLTTWTQADNEVFEYTRRKTDVAVLVQQADSLCQA 239

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG--VNKSAHGVRKFSATISADAGA 302
           LA  P    T  +    +  +   FS W +   T AG  ++   HG+RK    + ADAGA
Sbjct: 240 LAALPRRHVTILVTEWGKPFSVDGFSGWMRDAMTAAGLPLDCKPHGLRKTLGRMLADAGA 299

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLG 332
           TAHE+MA  G  T+ +AE YT+ ADR R G
Sbjct: 300 TAHEIMAALGHMTLAEAERYTREADRRRGG 329


>gi|148257958|ref|YP_001242543.1| putative phage integrase [Bradyrhizobium sp. BTAi1]
 gi|146410131|gb|ABQ38637.1| putative phage integrase [Bradyrhizobium sp. BTAi1]
          Length = 382

 Score =  145 bits (366), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 103/349 (29%), Positives = 172/349 (49%), Gaps = 11/349 (3%)

Query: 6   RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPY-PHESTFIPAYMSALTG-STPKREYINS 63
           RLPP+V +   + G     FR+G G RIRLP  P  S F+ AY SAL G +T  R  + S
Sbjct: 4   RLPPYVERNHVK-GHTYLSFRRGKGARIRLPDDPTSSEFMSAYQSALLGQATSSRPELRS 62

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
           P     T+  LI+ Y +S+ +  L   S+  +    + +  + G      ++ + I +G+
Sbjct: 63  PVH--GTISALIASYMRSSDYIGLRKTSKEGYGRRLEALRIEHGHRTVAGLSRERIITGI 120

Query: 124 -ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
            +     P +A+  L  +R+L + A+   ++  +P + ++RPK   + IR WT+++++ F
Sbjct: 121 LQPFADRPGAALDTLKKLRILIRHAINIGWIKHDPSVGIKRPK--LQRIRSWTEDEIELF 178

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGF 241
           +  W   ++ RLAFE  L +G R SD  R    H+   N  ++  Q+TG  + + L    
Sbjct: 179 RKKWPLETKQRLAFELFLNTGQRRSDVVRMAWSHITPENRIAVAQQETGRRLLIPLHRDL 238

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISAD 299
           +  LA+      +       Q  +   FS W +   T AG+      HG+RK +    A+
Sbjct: 239 LSALAVAKRDHMSIITTAYGQSFSVDGFSQWMRDAITDAGLPLGCQPHGLRKATGRRLAE 298

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
           AGATA  +M+  G  T+ +AE YT+ AD+  L +    R+     +D P
Sbjct: 299 AGATAKMIMSVLGHTTLAEAERYTEEADQASLAVDAVARLEGHKANDFP 347


>gi|222107069|ref|YP_002547860.1| Integrase [Agrobacterium vitis S4]
 gi|221738248|gb|ACM39144.1| Integrase [Agrobacterium vitis S4]
          Length = 344

 Score =  142 bits (357), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 87/334 (26%), Positives = 162/334 (48%), Gaps = 6/334 (1%)

Query: 6   RLPPFVTKERTRHGKIIYYFR-KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64
           R P +      RHGKI +Y+R KG   +     P    F+ +Y  A+ G   ++  +   
Sbjct: 3   RPPKYCQGFEDRHGKIRWYYRRKGFPIKPLSGLPWSPEFMASYEKAMAG---EKIEVGKS 59

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
           +  P T+  L+  Y K++ +  L+ +++ ++    ++   + G      +  ++++  + 
Sbjct: 60  KSAPGTVSALVVSYYKTSDFQRLSESTKTTYRGIIERFREEHGAKRVHHMQAQNVKKIIG 119

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
            +  TP++A   L  + +L   AV  ++   +P   V++ + K+EG   W +  ++QF +
Sbjct: 120 EKAATPAAANNLLRIIHILMLHAVDLQWRRDDPTKDVKKIRHKSEGFLTWEEHHIEQFTA 179

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
           +   G++  LA   LLY+G R SD  R G QH+++   SI  QKTG ++ +     F  +
Sbjct: 180 YHKPGTRAHLALSLLLYTGQRRSDVVRMGRQHVRDGWISIVQQKTGQLVEIPFHAAFKDV 239

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGA 302
           L   P+   TF      +      F+ WF+    +AG+    S HG+RK +    A+AG 
Sbjct: 240 LNALPLKNMTFLTTAQGKPFTPAGFTNWFRDMTKEAGLPDKLSPHGLRKAACRRLAEAGC 299

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
           T H++MA  G +++D+   YT  A R  L  + +
Sbjct: 300 TPHQIMAISGHQSLDEVTRYTVAASRRELATQAA 333


>gi|92115952|ref|YP_575681.1| phage integrase [Nitrobacter hamburgensis X14]
 gi|91798846|gb|ABE61221.1| phage integrase [Nitrobacter hamburgensis X14]
          Length = 389

 Score =  139 bits (349), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 103/328 (31%), Positives = 162/328 (49%), Gaps = 10/328 (3%)

Query: 8   PPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHES-TFIPAYMSALTGSTPKREYINSPRK 66
           PP +TK+  RHG I +Y R   G ++RL   + +  F  AY   L G+           +
Sbjct: 6   PPRLTKDTDRHGNIRWYVRTLDGPKVRLRDEYGTPAFWQAYRDVLAGNIKPPPPSTRIER 65

Query: 67  KP---TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
           KP    +L WL S+Y  SA +  L   +R    +  D I    G+  Y+ +  KHIR+  
Sbjct: 66  KPFDKASLAWLCSQYYTSAEYKQLNERTRYVRRATLDHICAADGEKPYKLLLPKHIRARR 125

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
           ++R   P SA   + ++R +F +A+  +YVA+NP  +V   K K +G   W+ E++++F+
Sbjct: 126 DARADRPESANGMIKALRQVFAFAIENDYVALNPAQAVPYLKAKGDGHHSWSLEEIEKFE 185

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---TIITVELP-- 238
                G+  RLA   LLY+G R SD    G   ++       TQ  G     IT+++P  
Sbjct: 186 KKHPIGTMARLALALLLYTGQRRSDVIVLGPALVREGWLHF-TQFKGREHKPITLDIPII 244

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISA 298
               +++  T  GK+T+ +N   +   A  F  WF  +   A V   AHG+RK +A+  A
Sbjct: 245 PELQRVIDATACGKDTYLLNGLGRPFTAAGFGNWFHDRCKDAKVPGRAHGLRKAAASRLA 304

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGA 326
           + G++ HE+MA  G  T  +   YTK A
Sbjct: 305 ELGSSEHEIMAITGHTTSKEVMRYTKAA 332


>gi|58040908|ref|YP_192872.1| Phage related integrase [Gluconobacter oxydans 621H]
 gi|58003322|gb|AAW62216.1| Phage related integrase [Gluconobacter oxydans 621H]
          Length = 332

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 96/312 (30%), Positives = 156/312 (50%), Gaps = 6/312 (1%)

Query: 24  YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAH 83
           YFR     R  LP   +  F PAY +A+    PK E    P +   T   L  ++ KS  
Sbjct: 4   YFRHPRLPRQVLPPVDDPAFWPAYHAAI-AQIPKDE--PRPIRGTGTFARLCEDWLKSNS 60

Query: 84  WGSLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRV 142
           + SL  ++++   +   +++R+    F       KHIR+ +      P+S  ++L    +
Sbjct: 61  FLSLKPSTQVGHRNIVLRMMREDFATFHVSDFEPKHIRAIINRFSDRPASGNRWLRIFGI 120

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202
           LF+ A+ Q+ + ++P   V R K + EG RPWT+ ++ QF++ W  GS+ R AF  LLY+
Sbjct: 121 LFRLAIEQDLIQVDPARDVRRLKERAEGARPWTEVEVAQFQAHWPLGSRARTAFALLLYT 180

Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ 262
           G R SD  + G   +++ + ++  QKTGT + V +       LA T   K  +      +
Sbjct: 181 GQRRSDVVKIGPACIKDGMIAVTQQKTGTSLMVPILKDLALALAATLGVKAYYLEVVPGR 240

Query: 263 KMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
           K ++       K     AG+  + SAHG+RK +A   A+AG T H++ A  G KT+ + E
Sbjct: 241 KPSSDSLGNLMKDWTLAAGLPSDLSAHGLRKTAARRLAEAGCTTHQIAAITGHKTLAEVE 300

Query: 321 TYTKGADRIRLG 332
            YT+  D+ RL 
Sbjct: 301 RYTRSVDQKRLA 312


>gi|218528999|ref|YP_002419815.1| integrase family protein [Methylobacterium chloromethanicum CM4]
 gi|218521302|gb|ACK81887.1| integrase family protein [Methylobacterium chloromethanicum CM4]
          Length = 367

 Score =  134 bits (338), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 96/355 (27%), Positives = 165/355 (46%), Gaps = 15/355 (4%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLP-YPHESTFIPAYMSALTGSTPKREYINSPR 65
           LP +V  +  RH  + YYFR+    ++RL   P    F+  Y   L G  P+R+  ++P 
Sbjct: 10  LPEYVVSDTDRHDNVRYYFRRRPAPKVRLEGIPGSEAFMNKYYDCLDGRIPERKSRSAP- 68

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
             P +   L   Y  S  + SL V++R       D+I    G      +  +H+R+    
Sbjct: 69  AAPGSFAALRLAYLGSPEFKSLDVSTRAWQRRALDEISEAHGTKRVAMMQARHVRTLRNG 128

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           ++ TP++A   L +++ LFKWA      + +P  +V+  K   +G  PW+  +++ +++ 
Sbjct: 129 KRETPAAANTMLKALKALFKWANENGRASSDPTRNVDFLKYAKKGFHPWSPSEVEAYEAA 188

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI----KTQKTGTIITVEL-PDG 240
              G+  RLA E LLY+  R  D  R G  +L    F         +   +I + + PD 
Sbjct: 189 HLVGTTARLALELLLYTAGRREDVVRFGPHNLAAGRFRFVQGKNEDRAPVLIDIPVHPDL 248

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISAD 299
              + A  P G   F + +  +      F   FK    +AG+ + SAHG RK +A   A 
Sbjct: 249 AEAIAAAQPSGA-IFILTHYGRPFTPNGFGNRFKKWCIQAGLPHCSAHGCRKAAAARLAT 307

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLG------IKNSRRISSVVDSDDP 348
            GATAH++M+  G +++ + E YT+ A R ++       + + R   S + ++ P
Sbjct: 308 RGATAHQIMSVTGHQSLAEVERYTRSALRAQMADTAMALLPDRRSAGSTIPANRP 362


>gi|86358521|ref|YP_470413.1| integrase/recombinase protein [Rhizobium etli CFN 42]
 gi|86282623|gb|ABC91686.1| probable integrase/recombinase protein [Rhizobium etli CFN 42]
          Length = 404

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 88/348 (25%), Positives = 162/348 (46%), Gaps = 25/348 (7%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHES-------TFIPAYMSALT----GSTPKREYINSPRKK 67
           G   YY RK   +++R+    +         F+ AY +AL     G+ P ++ +  PR+ 
Sbjct: 17  GNPRYYVRKNGYKKVRIFEKFDDGRGNITEAFMKAYWAALAAMDGGAAPSKKEV--PRED 74

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127
             T  WL+ +Y +S  +  L V ++    S   +    +G   Y+K   + + +    RK
Sbjct: 75  --TFDWLVDQYYRSNAFKRLEVTTQSDKRSVLARFCMTAGPLPYKKFRQQDVANSQLKRK 132

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQE--YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
            TP +A + +  +R LF WA++Q+   ++ NP   +++    +EG   WT +++  ++++
Sbjct: 133 ETPGAADKLVKVLRALFNWAMKQDPPLISANPATGIKKLNAASEGFHTWTPDEIDTYRAY 192

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT----GTIITVELPDGF 241
              G+  RLA E ++  G R SD+   G QH          +K      T+I V +    
Sbjct: 193 HPIGTTARLALEIMINVGARISDAAYIGRQHESGGELRFTARKNRNRKPTVIEVPMMPDL 252

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADA 300
           +  L  T  G   + +    +           +     AG+ + SAHG+RK +A I A++
Sbjct: 253 VDALRHTKTGDFNYLVTEHGRPFTVNGLGNRMREWCDAAGLPQCSAHGLRKAAAVIFAES 312

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
           GA+A E+ A +GW  ++ AETY + A + ++    S   + + D  +P
Sbjct: 313 GASAPEMCAVFGWSKLETAETYIRNAQKRKMA---SNAFARLADYRNP 357


>gi|329888236|ref|ZP_08266834.1| phage integrase family protein [Brevundimonas diminuta ATCC 11568]
 gi|328846792|gb|EGF96354.1| phage integrase family protein [Brevundimonas diminuta ATCC 11568]
          Length = 343

 Score =  129 bits (325), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 89/343 (25%), Positives = 164/343 (47%), Gaps = 14/343 (4%)

Query: 8   PPFVTKERTRHGKIIYYFRKGHG--RRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
           P FV+  R RHG + + FR+      + R  +  E  +  A+ +  + + PK   I   R
Sbjct: 5   PKFVSAYRDRHGVLRWRFRRTGSPQSQTRAIFGTEDWW--AWYAESSEARPK--AIGQDR 60

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
            KP ++  L   Y  SA +  L  N++ +++   D+     G   + ++  +HIR  ++ 
Sbjct: 61  TKPGSIHALAVAYYSSARFLQLKPNTKHTYKGVLDRYRDVHGAKPFSRLEPRHIRQQMDD 120

Query: 126 -------RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
                  + +T + A   L  +R + ++A+ +  ++++P + V   K +T G   WT+++
Sbjct: 121 MAREMIEQGNTVTPANTMLKVLRSVMRFAMERGLISVDPTMGVRMLKHQTSGFHTWTEDE 180

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
           +  F++ W  GS+ RL F+ LLY+  R  D  +  V  +  +  +++  KTG +I +   
Sbjct: 181 IAMFEAHWPLGSKQRLGFDLLLYTAQRSDDVRQMTVHQIARDRVTVRQGKTGQLIDIPQH 240

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATIS 297
                 LA + IG          +      F  W K  A KAG+ + SAHG+RK  +   
Sbjct: 241 PRLQASLAASAIGHLVVLTTQHGKMYTPNGFGNWIKDAAVKAGLPHCSAHGLRKAQSRRL 300

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
           A+AG + HE+ A  G +++ + E YT+ A+R  L     +R+ 
Sbjct: 301 AEAGCSTHEIAAITGHQSLKEIERYTREANRRGLADGAMKRVG 343


>gi|83945755|ref|ZP_00958099.1| phage integrase [Oceanicaulis alexandrii HTCC2633]
 gi|83850845|gb|EAP88706.1| phage integrase [Oceanicaulis alexandrii HTCC2633]
          Length = 310

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 88/298 (29%), Positives = 148/298 (49%), Gaps = 12/298 (4%)

Query: 44  IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII 103
           + AY  AL  +TP    +     +  T+  LI +Y  S+ + +L  +++ ++ S  +   
Sbjct: 1   MAAYAQAL-ANTPLETDLAKSTARKGTIDRLIEDYYHSSAFDTLETSTQRTYRSSLEPFR 59

Query: 104 RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163
              G    R + T+H+   +   +  P++A + L  ++ +F  AVRQE    NP   ++ 
Sbjct: 60  NTYGHMPVRTVQTRHLERILFDLREKPTAANKLLKRLKTIFDLAVRQEIRHDNPAKPIKA 119

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN---- 219
            K  ++G   WT+ +++ FK+ +  GS+PRLA   LL +G R SD  R G Q + +    
Sbjct: 120 RKVDSDGFHAWTEAEIEAFKTAYPSGSKPRLALALLLCTGQRGSDVARMGPQDIVDIQGG 179

Query: 220 -NIFSIKTQKTGTIITVE-LPDGFMKLLAMTPIGKETFFINNDKQKMNATQ-FSIWF--K 274
                +K QKT T + +  LP+  ++L A    GK   F+  +  K  + + F  WF  +
Sbjct: 180 SRAIRVKQQKTKTPLLIPILPELAVELAARN--GKHMVFLTTEYGKAFSVKGFQQWFAER 237

Query: 275 AKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           AKA       +AHG+RK  A   A+AGAT H + +  G KT+ +   YT G D+ +L 
Sbjct: 238 AKAATGNPKCTAHGLRKACAYRLAEAGATVHMIQSITGHKTLAEVARYTAGRDQFKLA 295


>gi|312114649|ref|YP_004012245.1| integrase family protein [Rhodomicrobium vannielii ATCC 17100]
 gi|311219778|gb|ADP71146.1| integrase family protein [Rhodomicrobium vannielii ATCC 17100]
          Length = 312

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 84/303 (27%), Positives = 141/303 (46%), Gaps = 5/303 (1%)

Query: 10  FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
           +V +++ R+GK   Y+ +    R+ L  P  S   PA+++    +T   E    PR    
Sbjct: 11  YVRRKKGRNGKEHLYYEEPGKERVALRGPIGS---PAFLADYNAATEAEELPKRPRAAAY 67

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           +L  L++ Y+ S  + +LA +++        ++    GD D R +    I    E     
Sbjct: 68  SLTALVAAYQGSQRFRALAPSTQAVRRRIMSRLAAVYGDGDIRSMKRGDIVRMTEKLASG 127

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
           P  A   L   + L K A+   +   NP   + RP+ KT+G   WT+ ++  ++  W  G
Sbjct: 128 PEGARSLLKLTQQLVKLAIDLGWRDDNPVRDISRPRIKTDGRHCWTEAEIAAYRKRWDVG 187

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP 249
           ++ RLA E LL +G R  D  R   +H++     +  +KT   +   +    +K++A T 
Sbjct: 188 TRQRLALELLLQTGQRKGDVVRLSREHVKGGRLKLTQEKTHVCVDAAIKPELLKIIAATV 247

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHEL 307
            G +T  ++          F   F+A   +AG+    SAHG+RK  A   A+AGATAHE+
Sbjct: 248 TGVQTLLVSTKGTPYGTKAFCGVFRAWCDEAGLPPECSAHGLRKAFARRMAEAGATAHEI 307

Query: 308 MAT 310
           MA 
Sbjct: 308 MAA 310


>gi|299134375|ref|ZP_07027568.1| integrase family protein [Afipia sp. 1NLS2]
 gi|298591122|gb|EFI51324.1| integrase family protein [Afipia sp. 1NLS2]
          Length = 383

 Score =  126 bits (317), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 92/331 (27%), Positives = 160/331 (48%), Gaps = 21/331 (6%)

Query: 23  YYFR--KGHGRRIRLPYPHES-------TFIPAYMSALTGSTPKREYINSPR-KKPTTLK 72
           YY R  +   ++IR+    E+        F+ AY+ AL  ++  +E  ++P+  +  T  
Sbjct: 21  YYVRNLRKSSKKIRIRESFEAPDGTITPEFMKAYLDAL--ASLDKETSSAPKASREKTFS 78

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVESRKHTPS 131
           WL  +Y +SA +      ++       ++     +GD  Y       +    + R  TP 
Sbjct: 79  WLCDQYYRSAEFQRFDRLTQADKRGVLNRFCAAGAGDLPYAAFRQADVERSRDKRAGTPG 138

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           +A + +  +R LFKWA+++   ++NP + VE+   + EG   WT +++  ++   S G++
Sbjct: 139 AADKLVKYLRALFKWAIKKRLASVNPAIGVEKIN-EGEGWHAWTPDEVATYRKHHSIGTK 197

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNN---IFSIKTQKTGTIITVELPDGFMKLLAM- 247
            RLA E +L  G R SD+CR G QH  N      + K +   +  T+E P       A+ 
Sbjct: 198 ARLALELMLNVGARISDACRIGRQHESNGWLKFVAWKNRNKKSRKTIECPITLELRAAID 257

Query: 248 -TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAH 305
            T  G  T+ IN+  +           +     A + + S+HG+RK +A I A+ GATA 
Sbjct: 258 ATETGDLTYLINDLGKAFTIDGLGNKMRDWCDAADLPQCSSHGLRKAAAVILAENGATAP 317

Query: 306 ELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
           EL A +GW  ++ AETY + A + R+ + N+
Sbjct: 318 ELCAIFGWSKLETAETYIRQA-QSRIMVSNA 347


>gi|312115482|ref|YP_004013078.1| integrase family protein [Rhodomicrobium vannielii ATCC 17100]
 gi|311220611|gb|ADP71979.1| integrase family protein [Rhodomicrobium vannielii ATCC 17100]
          Length = 352

 Score =  125 bits (314), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 90/332 (27%), Positives = 156/332 (46%), Gaps = 10/332 (3%)

Query: 6   RLPPFVT-KERTRHGKIIYYFRKGHGRRIRLP-YPHESTFIPAYMSALTGSTPKREYINS 63
           + PP+   K   R+    Y+ R G+  R+R+P  P    F+  Y  A   +  K   I +
Sbjct: 8   KAPPYCHWKTNGRNFGCWYFERPGY-PRVRVPGLPWTPEFMAVYEKA---TKAKPAEIGA 63

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
            R  P +L  +I  Y  SA W  LA +++ ++    + +    G      +  +HI+  +
Sbjct: 64  SRTVPRSLGAVIVAYYSSAAWRGLASSTKRTYGGVIEALREAHGGMPIAGLKREHIKKLI 123

Query: 124 ESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
           E +  +    +A + L+ + +L   A+    +  NP  +V++ K +  G   WT++++  
Sbjct: 124 EKKALEGGACAANRLLSVLGILLDVALDAGLIETNPARTVKKLKHRAIGFHTWTEDEVAA 183

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241
           F++ W+  ++ RLAFE LL +  R SD  +     +     ++  QKT   + + L    
Sbjct: 184 FRAHWAIETRQRLAFELLLCTAQRSSDVRQMRTAQIAGGCVALSQQKTHAPLRIPLLPEL 243

Query: 242 MKLLAMTP-IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISAD 299
              LA  P IG ET  +    +      F ++ K     AG+   SAHG+RK +A   A+
Sbjct: 244 QAALAAAPVIGAETALVTQYGRAFTEKGFGLFIKKACVAAGLTHCSAHGLRKAAARRLAE 303

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           AG T H++ A  G  T+ + E YTK A ++RL
Sbjct: 304 AGCTVHQIAAITGHATLREIERYTKEASQLRL 335


>gi|307944703|ref|ZP_07660042.1| putative integrase family protein [Roseibium sp. TrichSKD4]
 gi|307772130|gb|EFO31352.1| putative integrase family protein [Roseibium sp. TrichSKD4]
          Length = 392

 Score =  122 bits (306), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 93/336 (27%), Positives = 164/336 (48%), Gaps = 23/336 (6%)

Query: 14  ERTRHGKIIYYF--RKGHGRRIRLPYPHEST-FIPAYMS----ALTGSTPKREYINSPRK 66
           E  R    +YY   RKG GR +R+  P +S+ F P Y      AL+   P        R 
Sbjct: 54  EMPRKSGPVYYVQTRKG-GRALRIQSPADSSEFWPEYGRLVGRALSDPGPISPTTACGRH 112

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
           K   +  LI+ YR+S  + SL  N++ ++    ++I    G  ++R ++ + IR  +++ 
Sbjct: 113 K---IAQLINAYRQSRDFTSLKPNTQKTYSCALNKIADLFGIREFRTLSRQDIRLAMDNM 169

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
                +A QFL  +R L  W  ++ Y    P   ++   +   G   W++E++  + +  
Sbjct: 170 PI--YAANQFLQQIRQLNDWCDQRGYTDTFPAAGIKSHGKSRTGFPAWSQEEVDTYLTAH 227

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL-PDGFMKLL 245
             G+Q RL  + L ++G+R  D  R G  H+++   +I  QK G  +T+ L PD  + + 
Sbjct: 228 PIGTQARLMIDLLRFTGMRVGDIIRLGPDHIRDGFIAITLQKNGVPVTIPLNPDLEVSID 287

Query: 246 AMTPIGKETFF-INNDKQKMNATQ-FSIWFKAKATKAGVNKSA-------HGVRKFSATI 296
           A TP G +TF  ++  K+  ++++ F+  F+A    AG+  +A       HG+RKF+   
Sbjct: 288 ATTPDGAKTFLTLDRFKRAFSSSKYFAQTFRAHCRAAGLEGTAARRAVSGHGLRKFALIS 347

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
             + G T  E  A +GW+     + Y++  DR R+G
Sbjct: 348 VLENGGTIREAQALFGWRDAAMVQHYSEELDRERVG 383


>gi|310815686|ref|YP_003963650.1| integrase/recombinase [Ketogulonicigenium vulgare Y25]
 gi|308754421|gb|ADO42350.1| integrase/recombinase [Ketogulonicigenium vulgare Y25]
          Length = 361

 Score =  122 bits (306), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 95/335 (28%), Positives = 155/335 (46%), Gaps = 35/335 (10%)

Query: 16  TRHGKIIYYFRKGHGRRIRLP-YPHES-TFIPAYMSALTGSTPKREYINSPRKKPT---T 70
            R GK   YF++     ++LP  P +   F+ AY  A + +         P K P    +
Sbjct: 19  VRRGKTYRYFQRRGFPLVKLPDLPMDDPAFLRAYAEAKSAN---------PEKSPAAAGS 69

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
              L+    KS H+    + +R  F  + D ++ + G+   R + ++HIR+ +      P
Sbjct: 70  FAALVRAALKSDHYSQSKLATRAMFRRHCDALVEEFGELPARGLRSRHIRANL------P 123

Query: 131 SSAIQF--LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP-WTKEDMQQFKSFWS 187
            S  Q   L + R L  + V    +  N  L V  PK K++G  P WT++++  F++ W 
Sbjct: 124 KSTSQGHRLRTWRFLCSFGVATNLLERNEALDVAMPKAKSKGGHPPWTQDEIAAFRTRWP 183

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII----TVELPDGFMK 243
            GS  R AFE L +SG R SD+ R G   ++  + + +  KT        +  LPD    
Sbjct: 184 MGSATRAAFELLRFSGARISDAVRLGPGMVRGGVLTYRQVKTDGPAHIPWSCPLPDFAAH 243

Query: 244 LL--------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSAT 295
           L         A+  +  +  +++   +  +        +  A +AG  KSAHG+RK  AT
Sbjct: 244 LSEDRAIMHHALEALAGQMTYLDARGKARSEKSLGTMIREAAMEAGFKKSAHGLRKSLAT 303

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
             A+ GATAH++ A  G +T+ + + YTK ADR R
Sbjct: 304 ELAEGGATAHQISAWTGHETLKEVDHYTKSADRRR 338


>gi|254559696|ref|YP_003066791.1| phage integrase [Methylobacterium extorquens DM4]
 gi|254266974|emb|CAX22774.1| phage integrase [Methylobacterium extorquens DM4]
          Length = 426

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 89/329 (27%), Positives = 152/329 (46%), Gaps = 9/329 (2%)

Query: 10  FVTKERTRHGKIIYYFRKGHGRRIRL-PYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
           FV  +  RHG + YYFR+    + RL   P    F+  Y   L G  P        R  P
Sbjct: 8   FVVSDVDRHGNVRYYFRRRPDPKTRLRGKPGSKIFMETYDRCLAGDAPAATACAEVR--P 65

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128
            + + +   Y  S+ +G+L  +++       +      G    R++  +H+R   +SR+ 
Sbjct: 66  GSFRSVCERYLGSSAFGALDPSTQAWRRRGLEAACEAHGGKLIRRLLARHVRQMRDSRRG 125

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           TP++A   L ++R LF WAV  +    +P   V+R +  ++G   W+  +++ +++    
Sbjct: 126 TPAAANTLLKALRALFSWAVEHDLAPGDPTREVKRVRYASKGHHSWSLTEVEAYEAVHPL 185

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL-----PDGFMK 243
           G++ RLA   LLY+  R  D  R G +H+          K      V +     PD    
Sbjct: 186 GTKARLALALLLYTAGRREDVVRLGPRHVSAGRMRYVQAKNEHRAPVAMDIPIHPDLAEA 245

Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGA 302
           + ++ P    +F   +  +  +   F   FK    +A + + SAHG RK +A   A+ GA
Sbjct: 246 IASVPPSSCPSFLETDYGRSFSPNGFGNRFKEWCIQAALPHCSAHGCRKATAARLAERGA 305

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRL 331
           T H++MA  G +T+++ E YT+ A R RL
Sbjct: 306 TPHQIMAITGHRTLEEVERYTREAQRARL 334


>gi|218528998|ref|YP_002419814.1| integrase family protein [Methylobacterium chloromethanicum CM4]
 gi|218521301|gb|ACK81886.1| integrase family protein [Methylobacterium chloromethanicum CM4]
          Length = 426

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 89/329 (27%), Positives = 152/329 (46%), Gaps = 9/329 (2%)

Query: 10  FVTKERTRHGKIIYYFRKGHGRRIRL-PYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
           FV  +  RHG + YYFR+    + RL   P    F+  Y   L G  P        R  P
Sbjct: 8   FVVSDVDRHGNVRYYFRRRPDPKTRLRGKPGSKIFMETYDRCLAGDAPAATACAEVR--P 65

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128
            + + +   Y  S+ +G+L  +++       +      G    R++  +H+R   +SR+ 
Sbjct: 66  GSFRSVCERYLGSSAFGALDPSTQAWRRRGLEAACEAHGGKLIRRLLARHVRQMRDSRRG 125

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           TP++A   L ++R LF WAV  +    +P   V+R +  ++G   W+  +++ +++    
Sbjct: 126 TPAAANTLLKALRALFSWAVEHDLAPGDPTREVKRVRYASKGHHSWSLTEVKAYEAVHPL 185

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL-----PDGFMK 243
           G++ RLA   LLY+  R  D  R G +H+          K      V +     PD    
Sbjct: 186 GTKARLALALLLYTAGRREDVVRLGPRHVSAGRMRYVQAKNEHRAPVAMDIPIHPDLAEA 245

Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGA 302
           + ++ P    +F   +  +  +   F   FK    +A + + SAHG RK +A   A+ GA
Sbjct: 246 IASVPPSSGPSFLETDYGRSFSPNGFGNRFKEWCIQAALPHCSAHGCRKATAARLAERGA 305

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRL 331
           T H++MA  G +T+++ E YT+ A R RL
Sbjct: 306 TPHQIMAITGHRTLEEVERYTREAQRARL 334


>gi|146276197|ref|YP_001166356.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17025]
 gi|145554438|gb|ABP69051.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17025]
          Length = 375

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 95/337 (28%), Positives = 151/337 (44%), Gaps = 7/337 (2%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
           P VTK   RHGK+ + FRK     + LP P+ S    A   A           ++     
Sbjct: 16  PGVTKVVDRHGKVRWRFRKKDRADVYLPGPYASAAFRAAYEAAVAGAATPAARSTAAY-- 73

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128
            +L WLI  Y  S  + +L+   R       D +   +G   + ++ T+H+ + + ++K 
Sbjct: 74  GSLAWLIETYLTSPRFQNLSETRRKRLRPDLDWLRENAGKLPFNRLATRHVEA-LMAKKA 132

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYV--AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            P +A     ++ +LF +A++ E      NP    +R K   +G   WT  ++ QF ++ 
Sbjct: 133 GPWAANMIKKALSLLFNYAIKNEICDQKHNPATLADRRKVNPDGWHAWTSAEIAQFLAYH 192

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
            EG+  RLA   +L +G    D  R G Q++       + +K+  I   E+       L 
Sbjct: 193 GEGTPQRLACLLILNTGAARGDLIRLGWQNVNGGRIRYRRRKSEVIGDYEILPELAAELR 252

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAH 305
             P  +  F + N +       F+ WFK     AG+ + SAHGVRK  AT  AD+G +  
Sbjct: 253 HVPPAQMLFLMLNGRP-FKPDSFTDWFKRACVAAGLPHCSAHGVRKGQATNIADSGGSEW 311

Query: 306 ELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
           E+M+     T  +A TYTK A+R RL      R+S  
Sbjct: 312 EVMSFLAHATPHEAATYTKKANRGRLADSGLGRLSGA 348


>gi|75674473|ref|YP_316894.1| phage integrase [Nitrobacter winogradskyi Nb-255]
 gi|74419343|gb|ABA03542.1| phage integrase [Nitrobacter winogradskyi Nb-255]
          Length = 359

 Score =  120 bits (300), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 95/326 (29%), Positives = 158/326 (48%), Gaps = 10/326 (3%)

Query: 10  FVTKERTRHGKIIYYFRKGHGRRIRL-PYPHESTFIPAYMSALTGSTP---KREYINSPR 65
           +  ++  RHG +  Y R+   +++RL   P    F+  Y  AL G       +  +  P 
Sbjct: 17  YTYEDTDRHGNVRIYVRRPGMKKVRLRKTPGTPEFLEEYRDALAGRLELPSDKRPVRVPA 76

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
            K  TL+WL  +Y +SA +  L   ++       D I ++ GD  Y  +  +H+R   + 
Sbjct: 77  GK-GTLRWLCEQYYRSAEYKRLEPRTQHVRRLILDSICKRDGDKPYALMEPRHLRRRRDE 135

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +  TP +A   + ++R +F +A+  +    NP   V   K  +EG   W  E+++QF+  
Sbjct: 136 KSDTPEAANGIVKALRQVFTFALENDLAQRNPAKDVPYLKSGSEGFHSWNIEEVRQFEER 195

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT--IITVELP--DGF 241
            S GS+ RLA   LLY+G R SD    G QH+++  F+    K      +T+ +P     
Sbjct: 196 HSVGSKARLALALLLYTGQRRSDVVALGRQHIRDGWFTFTQVKNRNRKPVTLSIPVRPEL 255

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADA 300
             ++  TP G  T+ +    +   A  F  WF+ +  +AG+ + SAHG+RK +A   A+ 
Sbjct: 256 KAIIDATPSGNLTYLVTAFGKPFTANGFGNWFRERCDEAGLPHCSAHGLRKAAAARLAEL 315

Query: 301 GATAHELMATYGWKTVDQAETYTKGA 326
           GA+  E+MA  G  T  +   YT+GA
Sbjct: 316 GASESEIMAVTGHTTSKEIVRYTRGA 341


>gi|149915062|ref|ZP_01903591.1| Possible integrase/recombinase [Roseobacter sp. AzwK-3b]
 gi|149811250|gb|EDM71087.1| Possible integrase/recombinase [Roseobacter sp. AzwK-3b]
          Length = 329

 Score =  117 bits (292), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 85/320 (26%), Positives = 153/320 (47%), Gaps = 22/320 (6%)

Query: 38  PHESTFIPAYMSALTGSTPKREYINSPRKK----PTTLKWLISEYRKSAH----WGSLAV 89
           P    F+  Y  A  G  P+      PR++    P +L WLI+++ KS       G++  
Sbjct: 15  PDHPEFMERYTRARNGKRPE-----IPREEDKAIPQSLSWLIAKFEKSMQERVRAGAMHP 69

Query: 90  NSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVR 149
            +     +++D++    GD  + ++    I    +S   TP +A   + ++R L+ W+V 
Sbjct: 70  GTLKQRSAFYDRLRAPYGD-KHMEMPRSKIIEIRDSMIATPGAADNMVKALRALYAWSVE 128

Query: 150 QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDS 209
             +V  NP   + +  R T G  PW+ +D++ FK   S+GS   LA    +++  R SD 
Sbjct: 129 NGFVRSNPASGIGKINRGT-GATPWSIDDLRAFKDHHSKGSMAHLALTLFMFTACRISDV 187

Query: 210 CRAGVQHL--QNNIFSIKTQ---KTGTIITVELPDGFMKLLAMTPIGKETFFIN-NDKQK 263
              G QH   +  I  +  Q   K    +TV +       +A   +   T+ +N + K  
Sbjct: 188 VILGRQHEIERGGITYLDWQPAKKGSARVTVPILPPLADAIAAQKVVGSTYLLNGHGKPF 247

Query: 264 MNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
            +A  F  WF+ +  +AG++ +S HG+RK +  + A  GAT + +MA +G      +E Y
Sbjct: 248 ASAAAFGNWFRDRVREAGLDGRSPHGIRKAAGELMALQGATQYHIMAVHGHTQAKTSEGY 307

Query: 323 TKGADRIRLGIKNSRRISSV 342
           T+G +R RL  +  ++++S+
Sbjct: 308 TRGVNRQRLAAEAMQKMASM 327


>gi|168495175|ref|YP_001686913.1| integrase [Azospirillum phage Cd]
 gi|168148934|emb|CAO99398.1| integrase [Azospirillum phage Cd]
          Length = 295

 Score =  114 bits (284), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 77/269 (28%), Positives = 140/269 (52%), Gaps = 11/269 (4%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           TL W+I  YR S  +  LA  ++  +E+ FD++   + + ++  +  +HI    +   H+
Sbjct: 10  TLGWVIGRYRLSPEYQRLAPATKKIYEAAFDRLHDYAQE-EFSGLRRRHIMRVRDDLAHS 68

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
           P++A Q +T++  + ++A+ +E +  +P   V  P+ KT   R WT  ++ +F  + S  
Sbjct: 69  PATANQVITAIGAVCRFALDREMIETDPSHRV--PRLKTGEWRRWTDAELDKF--YQSAY 124

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM-- 247
              R  F   L++G R +D CRA    +Q+   ++  QKTG  + + L     + LA+  
Sbjct: 125 EALRRVFVMALFTGQRRADLCRATWGDIQDGGINVVQQKTGAHLWIPLHPTLERHLAIWK 184

Query: 248 ---TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGAT 303
              TP+   T   + D+        S  F+ +A K G+N  + HG+RK +A   A+AG +
Sbjct: 185 SDATPLPSVTILTSTDRTPWPPQVLSCAFRNEADKLGLNGCNLHGLRKTAAAKLAEAGCS 244

Query: 304 AHELMATYGWKTVDQAETYTKGADRIRLG 332
           A ++MA  G  T+++ E YT+ A++ RL 
Sbjct: 245 ARQIMAITGHSTMNEVERYTRQAEQRRLA 273


>gi|146276881|ref|YP_001167040.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17025]
 gi|145555122|gb|ABP69735.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17025]
          Length = 362

 Score =  113 bits (282), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 92/333 (27%), Positives = 158/333 (47%), Gaps = 20/333 (6%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHE-STFIPAYMSALTGSTPKREYINSPRKK 67
           P+V +  T  G+I + F K  G R  LP P   + F+ AY +AL        +  +PR  
Sbjct: 9   PYV-RPNTVKGRIYWKFEK-DGFRCNLPGPWGFAEFVAAYEAALN-------HAKAPRAS 59

Query: 68  PT---TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
                TL WLI +Y  S  + +L+ + + +     D +  ++G + + ++  +H+   + 
Sbjct: 60  TAIEGTLSWLIEQYLGSLRFQNLSDSRKRTIRHELDWLREQAGRYHFARLEVRHVEK-LM 118

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
           ++K  P++A     +M +L  +A ++  Y   NP    E+ K   +G   W +E++++F 
Sbjct: 119 TKKAGPTAANTVKKNMSMLCNFASKKLGYKGPNPAKFAEKLKTNPDGYHTWNEEEVERFL 178

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE-LPDGFM 242
                G++ RL     L +G+   D  R G QH++    + +  KT     +  LP+  +
Sbjct: 179 DRHGPGTKARLVILLALNTGMARQDLARVGRQHVKAGRIAYRRGKTSVAADLPILPELAV 238

Query: 243 KLLAMTP--IGKETFFINNDKQKMNATQFSI--WFKAKATKAGVNKSAHGVRKFSATISA 298
           +L A        +  FI  DK+ +  T  S+  WF+ +  +A V  + HG+RK  AT  A
Sbjct: 239 ELEAALANWSDGQMLFITQDKRPVGYTPESLGNWFRDRCAEANVPGALHGLRKAGATRLA 298

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           DAGAT  E+ +    K    A  Y K A+R RL
Sbjct: 299 DAGATEWEIASYLAHKDTKTAAIYVKKANRARL 331


>gi|254559697|ref|YP_003066792.1| phage integrase [Methylobacterium extorquens DM4]
 gi|254266975|emb|CAX22775.1| phage integrase [Methylobacterium extorquens DM4]
          Length = 320

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 83/314 (26%), Positives = 144/314 (45%), Gaps = 14/314 (4%)

Query: 47  YMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS 106
           Y   L G  P+R+  + P   P +   L   Y  S  + SL V++R       D+I    
Sbjct: 4   YYDCLDGKIPERKSRSVP-AAPGSFAALRLAYLGSPEFKSLDVSTRAWQRRALDEISEAH 62

Query: 107 GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
           G      +  +H+R+    ++ TP++A   L +++ LFKWA      + +P  +V+  K 
Sbjct: 63  GTKRVAMMQARHVRTLRNGKRETPAAANTMLKALKALFKWANENGRASSDPTRNVDFLKY 122

Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-- 224
             +G  PW+  +++ +++    G+  RLA E LLY+  R  D  R G  +L    F    
Sbjct: 123 AKKGFHPWSPSEVEAYEAAHLVGTTARLALELLLYTAGRREDVVRFGPHNLAAGRFRFVQ 182

Query: 225 --KTQKTGTIITVEL-PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281
                +   +I + + PD    + A  P G   F + +  +      F   FK    +AG
Sbjct: 183 GKNEDRAPVLIDIPVHPDLAEAIAAAQPSGA-VFILTHYGRPFTPNGFGNRFKKWCIQAG 241

Query: 282 V-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG------IK 334
           + + SAHG RK +A   A  GATAH++M+  G +++ + E YT+ A R ++       + 
Sbjct: 242 LPHCSAHGCRKAAAARLATRGATAHQIMSVTGHQSLAEVERYTRSALRAQMADTAMALLP 301

Query: 335 NSRRISSVVDSDDP 348
           + R   S + ++ P
Sbjct: 302 DRRSAGSTIPANRP 315


>gi|92118356|ref|YP_578085.1| phage integrase [Nitrobacter hamburgensis X14]
 gi|91801250|gb|ABE63625.1| phage integrase [Nitrobacter hamburgensis X14]
          Length = 359

 Score =  110 bits (274), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 89/325 (27%), Positives = 145/325 (44%), Gaps = 16/325 (4%)

Query: 6   RLPPFVTKERTRHGKIIYYFRKGHGRRIRLP-YPHESTFIPAYMSAL--TGSTPKREYIN 62
           +LPP V +   + G +   FR G G RI+LP  P+   F  AY  A+  T   P      
Sbjct: 5   KLPPNVERNVVK-GHVYLSFRVGKGPRIKLPPDPNSDEFRAAYAEAIGKTSQAP------ 57

Query: 63  SPRKKPT-TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121
           +P K    ++  LI  Y  S  + +L   S+  + S  DQ+ ++ G      +T + I++
Sbjct: 58  TPAKAAERSIGALIIRYLSSTAFKALRNTSKQGYRSRIDQMRKEHGHRSVSGLTKERIQT 117

Query: 122 GV-ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
            + +    TP +A+  L  +R+L + A   E++  +P   ++RPK K   IR WT  +  
Sbjct: 118 QILDPLADTPGAALDTLKKLRILIRHARDIEWLNTDPSDGIKRPKSKE--IRSWTDSECT 175

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
            F+  W  G++ R A+E +L  G   +D  R        + F    QKTG  + + +   
Sbjct: 176 AFEKRWKVGTRQRAAYELMLNVGTARADVHRVTWNQFDEDNFEYSRQKTGVEVAMTMAKR 235

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISA 298
               +   P    T       +      FS + +     AG+  +   HG+RK      A
Sbjct: 236 CRDAVYALPRKHITVLNTEFGKPFTVDGFSGFMRDAIKAAGLPLDCRPHGLRKTLGRRLA 295

Query: 299 DAGATAHELMATYGWKTVDQAETYT 323
           D G +AH++MA  G  T+ +AE YT
Sbjct: 296 DRGVSAHDIMAALGHTTLGEAERYT 320


>gi|260431275|ref|ZP_05785246.1| phage integrase [Silicibacter lacuscaerulensis ITI-1157]
 gi|260415103|gb|EEX08362.1| phage integrase [Silicibacter lacuscaerulensis ITI-1157]
          Length = 373

 Score =  109 bits (272), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 92/340 (27%), Positives = 165/340 (48%), Gaps = 12/340 (3%)

Query: 10  FVTKERTRHGKIIYYFRKGHGRRIRLPYPHES-TFIPAYMSALTGSTPKREYIN-SPRKK 67
           +V ++  RHG +  Y+R+ +GR++RL  P  S  F+  Y +A  G  PK    + + R  
Sbjct: 12  YVVEDVDRHGNVRLYYRR-NGRKVRLRGPAGSPEFLADYRTAAAG--PKEAKTDKAGRVV 68

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD--YRKITTKHIRSGVES 125
           P + +WL  +Y KSA +  L   ++    S  ++     GD D  + ++  +HIR   + 
Sbjct: 69  PKSFRWLCVQYFKSAMFQELDPRTQKVRRSILERFCEHKGDGDKPFAQLLPRHIRVRRDE 128

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
               P +A   + ++R L+++A+R ++   NP   VE  K   +G   WT  ++++++  
Sbjct: 129 MADRPEAANGMVKAVRQLYRYALRYDHHDDNPAEKVEYLKGNPDGFHSWTLAEIEKYEEA 188

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN--IFSIKTQKTGTIITVELP--DGF 241
              G+  RLA    LY+G R +D    G QH+++   IF+    +    + +E+P     
Sbjct: 189 HPIGTPARLALALALYTGQRRADLVVLGKQHVRDGWLIFTQHKGRNRKPVRMEIPVIPEL 248

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADA 300
            +++  TP G  TF +    +   +  F   F+     AG+ + S HG+RK +A   A+ 
Sbjct: 249 QQIIDATPTGDLTFLVTAFNRPFTSNGFGNRFRKWCDDAGLPQCSVHGLRKAAAARLAEL 308

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
           G T  E+M+  G +T  +   YT+ A +        RR+S
Sbjct: 309 GCTEQEIMSITGHRTSKEVTRYTRAASQKTRAESALRRLS 348


>gi|89070660|ref|ZP_01157933.1| phage integrase [Oceanicola granulosus HTCC2516]
 gi|89043740|gb|EAR49943.1| phage integrase [Oceanicola granulosus HTCC2516]
          Length = 375

 Score =  107 bits (267), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 98/351 (27%), Positives = 162/351 (46%), Gaps = 11/351 (3%)

Query: 5   LRLPPFVTKERTRHGKI-IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY-IN 62
           LRL  +V ++  RHG + +YY R G   R+R P      F+  Y  A  G    R +   
Sbjct: 8   LRLK-YVVEDVDRHGNVRLYYRRNGTKTRLRGPV-GSPEFLIDYRRAAAGPKEVRGHKAR 65

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII--RKSGDFDYRKITTKHIR 120
             R  P +LKWL  +Y KSA +  L   ++    S  ++    +  GD  +  +  +HIR
Sbjct: 66  VGRVVPRSLKWLCVQYYKSAMFTELDPRTQKVRRSILERFCEHKNDGDKPFALLLPRHIR 125

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
              +     P +A   + ++R L+++A+R ++   NP   VE  K + +G   WT  +++
Sbjct: 126 VRRDEMADRPEAANGMVKALRQLYRYALRYDHHDDNPADKVEYLKGEPDGFHSWTLAEIK 185

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN--IFSIKTQKTGTIITVELP 238
           +F+     GS  RLA    LY+G R +D    G QH+++   IF+    +    + +E+P
Sbjct: 186 KFEDAHPVGSPARLALALALYTGQRRADLVTLGKQHVRDGWLIFTQHKGRNRKPVRLEIP 245

Query: 239 --DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSAT 295
                 +++  TP G   F +    +   +  F   F+     AG+ N S HG+RK +A 
Sbjct: 246 VIPELQRIIDATPTGDLNFLVTAFNRPFTSNGFGNRFRKWCDDAGLPNCSVHGLRKAAAA 305

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346
             A+ G T  E+MA  G  T  +   YT+ A +        RR +   +SD
Sbjct: 306 RLAELGCTEQEIMAITGHATSKEVTRYTRAASQKTRAESALRRFTEEQNSD 356


>gi|294677620|ref|YP_003578235.1| phage integrase [Rhodobacter capsulatus SB 1003]
 gi|294476440|gb|ADE85828.1| phage integrase [Rhodobacter capsulatus SB 1003]
          Length = 356

 Score =  107 bits (267), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 75/260 (28%), Positives = 125/260 (48%), Gaps = 27/260 (10%)

Query: 95  FESYFDQIIRKSGDFD----------YRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLF 144
             S +  I+RK  DFD           + + ++HI + ++  K +  +A + L + R + 
Sbjct: 78  LSSLYQSILRK--DFDAMEAAYGTAPLKGLRSRHIEADLD--KLSADAANKRLKAWRRVM 133

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGL 204
             A R+  +  +P + V R K KTEG   WT+++++QF++ W  G+  R  FE + ++G 
Sbjct: 134 GGARRRGEIESDPSIEVRRIKVKTEGFPAWTQDEVEQFRARWPIGTVQRACFELVCWTGA 193

Query: 205 RCSDSCRAGVQHL-QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF-------- 255
           R +D+ R G  ++    + S +  KT     V   +      A     +ET         
Sbjct: 194 RTNDAVRLGPCNIDHGGVLSYRQSKTANPAMVPWSNPLPGYAAAWAAERETVKAALACLS 253

Query: 256 ----FINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATY 311
               F+  + +  +           A  AGV KSAHG+RK+  T  A+AG +AH +MA  
Sbjct: 254 GGFTFLEANGRVRSVKGLGNVISEAARGAGVEKSAHGLRKYRLTAIAEAGGSAHAIMAWG 313

Query: 312 GWKTVDQAETYTKGADRIRL 331
           G +T+ +AE YT+ ADR RL
Sbjct: 314 GHQTLVEAEHYTRAADRRRL 333


>gi|3128300|gb|AAC16152.1| integrase/recombinase [Rhodobacter capsulatus SB 1003]
          Length = 344

 Score =  106 bits (265), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 75/260 (28%), Positives = 125/260 (48%), Gaps = 27/260 (10%)

Query: 95  FESYFDQIIRKSGDFD----------YRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLF 144
             S +  I+RK  DFD           + + ++HI + ++  K +  +A + L + R + 
Sbjct: 66  LSSLYQSILRK--DFDAMEAAYGTAPLKGLRSRHIEADLD--KLSADAANKRLKAWRRVM 121

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGL 204
             A R+  +  +P + V R K KTEG   WT+++++QF++ W  G+  R  FE + ++G 
Sbjct: 122 GGARRRGEIESDPSIEVRRIKVKTEGFPAWTQDEVEQFRARWPIGTVQRACFELVCWTGA 181

Query: 205 RCSDSCRAGVQHL-QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF-------- 255
           R +D+ R G  ++    + S +  KT     V   +      A     +ET         
Sbjct: 182 RTNDAVRLGPCNIDHGGVLSYRQSKTANPAMVPWSNPLPGYAAAWAAERETVKAALACLS 241

Query: 256 ----FINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATY 311
               F+  + +  +           A  AGV KSAHG+RK+  T  A+AG +AH +MA  
Sbjct: 242 GGFTFLEANGRVRSVKGLGNVISEAARGAGVEKSAHGLRKYRLTAIAEAGGSAHAIMAWG 301

Query: 312 GWKTVDQAETYTKGADRIRL 331
           G +T+ +AE YT+ ADR RL
Sbjct: 302 GHQTLVEAEHYTRAADRRRL 321


>gi|315122001|ref|YP_004062490.1| phage-related integrase/recombinase [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495403|gb|ADR52002.1| phage-related integrase/recombinase [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 102

 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 47/80 (58%), Positives = 62/80 (77%)

Query: 40  ESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF 99
           E  F+PAY+SAL+G   ++ YI   +K+P TL+W IS+YRKSAHW SL +NSR   + YF
Sbjct: 22  EPNFMPAYLSALSGIPIEQGYIKPQKKEPQTLRWFISQYRKSAHWASLTLNSRKRLDLYF 81

Query: 100 DQIIRKSGDFDYRKITTKHI 119
           DQII+KSGDF Y+K+T+KHI
Sbjct: 82  DQIIKKSGDFYYKKLTSKHI 101


>gi|221641161|ref|YP_002527423.1| Integrase/recombinase [Rhodobacter sphaeroides KD131]
 gi|221161942|gb|ACM02922.1| Integrase/recombinase [Rhodobacter sphaeroides KD131]
          Length = 353

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 89/352 (25%), Positives = 158/352 (44%), Gaps = 30/352 (8%)

Query: 14  ERTRHG-KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           +R R G +++ Y R    R   LP  H     P +++A   +   +  +  P    +  K
Sbjct: 7   QRIRRGDRVLCYHRPTGTRLPDLPETH-----PEFVAAWAKAEATKPDLAPPVADKSVAK 61

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132
            ++   R S  W   A + R+S   + ++I  + G    R +  KH+   ++  K  P+ 
Sbjct: 62  -VVRALRASKRWKGFAASYRLSLRFHLERIETEHGTLPLRGLRQKHVE--MDLGKLDPNP 118

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
               L   R++F  A     +  +P   + +   K+ G   WT  ++  F++ W+ G++ 
Sbjct: 119 RNVSLKCWRLIFAQAKADGIIESDPSHEIGKLVTKSPGHVAWTTAEVAAFRARWAVGTRQ 178

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHL-QNNIFSIKTQKTGTII----TVELPDGFMKL--- 244
           R AFE L ++G R SD+CR    H+  + + + + QKTG +     T  LP   ++    
Sbjct: 179 RAAFELLAWTGCRVSDACRMTRTHIGSDGLMTFRQQKTGGLAYVPWTCALPSWALRWEEE 238

Query: 245 -----LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISA 298
                 A+      T    +  +  +    S +  A A +AG+  ++ HG+RKF  T  A
Sbjct: 239 RETVRAAVMATAGFTLLETSYGKARSVKGLSNFITAAAAEAGIEGRTPHGLRKFRLTAIA 298

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADR--IRLGIKNSRRISSVVDSDDP 348
           +AG  AH +MA  G  ++ +AE YT+ A R  + +G +  R      D +DP
Sbjct: 299 EAGGPAHAIMAWGGHASLSEAEAYTRAASRRGLVMGPEQERN-----DVNDP 345


>gi|77462207|ref|YP_351711.1| integrase/recombinase [Rhodobacter sphaeroides 2.4.1]
 gi|77386625|gb|ABA77810.1| Integrase/recombinase [Rhodobacter sphaeroides 2.4.1]
          Length = 348

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 89/352 (25%), Positives = 157/352 (44%), Gaps = 30/352 (8%)

Query: 14  ERTRHG-KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           +R R G +++ Y R    R   LP  H     P +++A   +   +  +  P    +  K
Sbjct: 2   QRIRRGDRVLCYHRPTGTRLPDLPETH-----PDFIAAWAKAEASKPDLAPPVADKSVAK 56

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132
            ++   R S  W   A + R++   + ++I  + G    R +  KH+   ++  K  P+ 
Sbjct: 57  -VVRALRASKRWKGFAASYRLNLRFHLERIETEHGALPLRGLRQKHVE--MDLGKLDPNP 113

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
               L   R++F  A     +  +P   + +   K+ G   WT  ++  F++ W+ G++ 
Sbjct: 114 RNVSLKCWRLIFAQAKADGIIESDPSHEIGKIVTKSPGHVAWTTAEVAAFRARWAVGTRQ 173

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHL-QNNIFSIKTQKTGTII----TVELPDGFMKL--- 244
           R AFE L ++G R SD+CR    HL  + + + + QKTG       T  LP   ++    
Sbjct: 174 RAAFELLAWTGCRVSDACRMTRTHLGSDGLMTFRQQKTGGPAYVPWTCALPSWALRWEEE 233

Query: 245 -----LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISA 298
                 A+      T    +  +  +    S +  A A +AG+  ++ HG+RKF  T  A
Sbjct: 234 RETVRAAVMATAGFTLLETSYGKARSVKGLSNFITAAAAEAGIEGRTPHGLRKFRLTAIA 293

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADR--IRLGIKNSRRISSVVDSDDP 348
           +AG  AH +MA  G  ++ +AE YT+ A R  + +G +  R      D +DP
Sbjct: 294 EAGGPAHAIMAWGGHASLSEAEAYTRAASRRGLVMGPEQERN-----DVNDP 340


>gi|77462632|ref|YP_352136.1| putative tyrosine recombinase [Rhodobacter sphaeroides 2.4.1]
 gi|77387050|gb|ABA78235.1| Putative Tyrosine recombinase [Rhodobacter sphaeroides 2.4.1]
          Length = 341

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 83/328 (25%), Positives = 147/328 (44%), Gaps = 18/328 (5%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHE-STFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
           R R G  +Y +     RR R   P +     P +++A      +   + S R +  T+  
Sbjct: 7   RVRRGGTVYKYH----RRTRKELPRDVPEDDPRFVAAWLAEEQRAPTVRS-RSQAGTIAA 61

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
               Y  S  +  L+   R     + ++I  +      + +  +HIR+ +E    +P  A
Sbjct: 62  ACEAYLGSRSYRELSDGYRPVIRRHVERIKEQGEKALLKDLLPRHIRADLEP--LSPPVA 119

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR-KTEGIRPWTKEDMQQFKSFWSEGSQP 192
              L + R L ++ + +  +  +P   V+R K  K  G   WT ED++ F++ W  G+  
Sbjct: 120 SSRLKAWRKLAEFWLLKGMLDADPSEGVKRKKMGKVAGFTEWTAEDLEAFRARWPIGTAQ 179

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHL-QNNIFSIKTQKTG-------TIITVELPDGFMKL 244
           RLA E   ++G RC D  R G Q + ++ + +   QKTG       T     L +    L
Sbjct: 180 RLALELYQWTGARCVDVIRLGPQMVGRDGVLTYVQQKTGNPAHVPWTCPAFGLEEQRADL 239

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGAT 303
           +   P+G   + +    +       S WF A A +AG+ +++AHG+RK+     A+ GA+
Sbjct: 240 MRCLPVGSPVYMLTEYGKPRTQKGVSQWFSAAAREAGLESRTAHGLRKYRMNALAEHGAS 299

Query: 304 AHELMATYGWKTVDQAETYTKGADRIRL 331
              + +  G  T+ + + YT+ ADR R+
Sbjct: 300 VLVMQSWVGHTTLLEVQEYTRRADRRRV 327


>gi|222148446|ref|YP_002549403.1| phage-related integrase [Agrobacterium vitis S4]
 gi|221735434|gb|ACM36397.1| phage-related integrase [Agrobacterium vitis S4]
          Length = 343

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 82/322 (25%), Positives = 150/322 (46%), Gaps = 16/322 (4%)

Query: 31  RRIRL-PYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAV 89
           +RIR+   P +  F   Y  A  G  P      S   KP ++ WL+  Y     +    V
Sbjct: 18  QRIRIFCLPGDEDFSRQYTLARYGEQPVPLKKASEVVKPRSIGWLVHSY---FEYMEQRV 74

Query: 90  NSRIS----FESYFDQIIRKSGDFDYRKITTK-HIRSGVESRKHTPSSAIQFLTSMRVLF 144
            +R+S     +   + + R   D D   I  +  +    +    TP+ A  F+ S+ V++
Sbjct: 75  KARLSSAKTLKKKRNLLARLIEDPDRIMIIPQPKLIEMQDKMASTPAQADAFIESISVMY 134

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGL 204
           +WA+++ ++  NP   ++R  +K +G  PW   D+++F ++   GS+P +A   LL++G 
Sbjct: 135 EWAIKRGHLKTNPAKGIDRIYKKGDGATPWKSADVKRFFAYHKPGSKPFIAMSILLWTGC 194

Query: 205 RCSDSCRAGVQH--LQNNIFSIK---TQKTGTIITVELPDGFMKLLAMTPIGKETFFI-N 258
           R  D    G +H  + + + +++    +K  + +T+ L       +    +  ET+ +  
Sbjct: 195 RIEDLTFLGPRHECILDGLEALRWVPAKKGSSEVTIPLLKPLKAAIHSQAVIAETYIVAR 254

Query: 259 NDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD 317
            +K   +    S  FK     AG+N  SAHGVRK  A + A+ G + +E+MA  G     
Sbjct: 255 GNKPFASGDSMSAMFKRWCIDAGLNHLSAHGVRKGLAELLAEQGCSQYEIMAILGHSEAK 314

Query: 318 QAETYTKGADRIRLGIKNSRRI 339
            +E YT+  +R +L  +   R+
Sbjct: 315 TSEVYTRRVERWKLAQQAMDRL 336


>gi|315122579|ref|YP_004063068.1| phage-related integrase/recombinase [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495981|gb|ADR52580.1| phage-related integrase/recombinase [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 78

 Score = 99.8 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 44/73 (60%), Positives = 56/73 (76%)

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE 253
           +AFE  LY+GLRCSD CR   QH + N+FSI+TQK  TI+TVELP+  +KLL +TP GKE
Sbjct: 1   MAFELCLYTGLRCSDVCRVSRQHFKGNVFSIQTQKVWTIVTVELPEIVIKLLEITPTGKE 60

Query: 254 TFFINNDKQKMNA 266
           TF +N +K+KM A
Sbjct: 61  TFIVNREKEKMIA 73


>gi|221638486|ref|YP_002524748.1| Tyrosine recombinase [Rhodobacter sphaeroides KD131]
 gi|221159267|gb|ACM00247.1| Tyrosine recombinase [Rhodobacter sphaeroides KD131]
          Length = 313

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 75/297 (25%), Positives = 135/297 (45%), Gaps = 13/297 (4%)

Query: 45  PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR 104
           P +++A      +   + S R +  T+      Y  S  +  L+   R     + ++I  
Sbjct: 6   PRFVAAWLAEEQRAPTVRS-RSQAGTIAAACEAYLGSRSYRELSDGYRPVIRRHVERIKE 64

Query: 105 KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP 164
           +      + +  +HIR+ +E    +P  A   L + R L ++ + +  +  +P   V+R 
Sbjct: 65  QGEKALLKDLLPRHIRADLEP--LSPPVASSRLKAWRKLAEFWLLKGMLDADPSEGVKRK 122

Query: 165 KR-KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-QNNIF 222
           K  K  G   WT ED++ F++ W  G+  RLA E   ++G RC D  R G Q + ++ + 
Sbjct: 123 KMGKVAGFTEWTAEDLEAFRARWPIGTAQRLALELYQWTGARCVDVIRLGPQMVGRDGVL 182

Query: 223 SIKTQKTG-------TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKA 275
           +   QKTG       T     L +    L+   P+G   + +    +       S WF A
Sbjct: 183 TYVQQKTGNPAHVPWTCPAFGLEEQRADLMRCLPVGSPVYMLTEYGKPRTQKGVSQWFSA 242

Query: 276 KATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            A +AG+  ++AHG+RK+     A+ GA+   + +  G  T+ + + YT+ ADR R+
Sbjct: 243 AAREAGLEGRTAHGLRKYRMNALAEHGASVLVMQSWVGHTTLLEVQEYTRRADRRRV 299


>gi|260432502|ref|ZP_05786473.1| phage integrase family protein [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260416330|gb|EEX09589.1| phage integrase family protein [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 353

 Score = 94.4 bits (233), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 88/337 (26%), Positives = 150/337 (44%), Gaps = 25/337 (7%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHES-TFIPAYMSALTGSTPKREYIN-SPRKKPTTLK 72
           R +    +Y + +  G R+    P +   F+ AY+ A + +  K+     SPR       
Sbjct: 6   RVKQDGKVYRYHRATGTRLPDGIPEDHPDFLAAYLKAESQTGQKKPRRGASPRAGTVAHA 65

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132
           W   ++ KS  +  L+   R    ++ D I+ K G     +I   HI + ++      ++
Sbjct: 66  WW--QFTKSDAFLDLSEGYRRRMMAHGDDIVAKGGKVPIDQIRAYHIENDIQDMDR--NA 121

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK-RKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           A   L + R    WA +   V  N    V+ PK +K    + W+ + +  F++ W   + 
Sbjct: 122 ARTRLKAWRKFLDWA-QPRLVERNWAKLVDMPKAKKGTPHKRWSADHVAAFRNRWPVDTP 180

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHL-QNNIFSIKTQKTGTIITV----ELP---DG--- 240
            RLAFE +L++G+R  D+ R G   + ++   + K +KTG    +    +LP   D    
Sbjct: 181 QRLAFELMLFTGMRICDAVRCGPGWIDRDGWMTFKQKKTGGDALIAFNRDLPPFADAEAR 240

Query: 241 --FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN----KSAHGVRKFSA 294
               + L        TF         +    S WF   A KAG+     ++AHG+R    
Sbjct: 241 AYLSECLNARTERHMTFLATIHGTSRSEKAASNWFSDAARKAGLKGDQRRTAHGLRDTCC 300

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
              A+ GATAH+LM   G +++++AE YTK AD+ R+
Sbjct: 301 ARLAEGGATAHQLMTWSGHESLEEAERYTKDADKKRM 337


>gi|146276876|ref|YP_001167035.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17025]
 gi|145555117|gb|ABP69730.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17025]
          Length = 294

 Score = 93.2 bits (230), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 68/264 (25%), Positives = 127/264 (48%), Gaps = 7/264 (2%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           +I +Y  S  + +L+ + + +     D +  ++G + + ++  +H+   + ++K  P++A
Sbjct: 1   MIEQYLGSLRFQNLSDSRKRTIRHELDWLREQAGRYHFARLEVRHVEK-LMTKKAGPTAA 59

Query: 134 IQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
                +M +L+ +A ++  Y   NP    E+ K   +G   W +E++++F      G++ 
Sbjct: 60  NTVKKNMSMLYNFASKKLGYKGPNPAKFAEKLKTNPDGYHTWNEEEVERFLDRHGPGTKA 119

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE-LPDGFMKLLAMTP-- 249
            L     L +G+   D  R G QH++    + +  KT     +  LP+  ++L A     
Sbjct: 120 HLVILLALNTGMARQDLARVGRQHVKAGRIAYRRGKTSVAADLPILPELAVELEAALANW 179

Query: 250 IGKETFFINNDKQKMNATQFSI--WFKAKATKAGVNKSAHGVRKFSATISADAGATAHEL 307
              +  FI  DK+ +  T  S+  WF+ +  +A V  + HG+RK  AT  ADAGAT  E+
Sbjct: 180 SDGQMLFITQDKRPVGYTPESLGNWFRDRCAEANVPGALHGLRKAGATRLADAGATEWEI 239

Query: 308 MATYGWKTVDQAETYTKGADRIRL 331
            +    K    A  Y K A+R RL
Sbjct: 240 ASYLAHKDTKTAAIYVKKANRARL 263


>gi|260462715|ref|ZP_05810921.1| integrase family protein [Mesorhizobium opportunistum WSM2075]
 gi|259031621|gb|EEW32891.1| integrase family protein [Mesorhizobium opportunistum WSM2075]
          Length = 432

 Score = 92.4 bits (228), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 90/366 (24%), Positives = 155/366 (42%), Gaps = 34/366 (9%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTG-STPKREYINSPRKK 67
           P ++    RHGK+ + +R    R + LP P +  F  AY +A+ G   PK   +  P   
Sbjct: 6   PGLSSYTDRHGKLRWRYRTKE-RVVSLPAPTQPGFKDAYQAAVEGRKVPKAPVVRMPGSA 64

Query: 68  -PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ--IIRKSGD--FDYRKITTK----- 117
            P T        + S  W +L   S+   +   ++  ++R   D    +R +  K     
Sbjct: 65  LPGTFGAAFQRLKISVKWLALDEASKRKNKRLIEEFLVLRVVPDHPLIWRDVPVKNLRRI 124

Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTK 176
           HI   +     TP  A   L  +R L   A+RQ+++ I+P  +VE RP     G + W++
Sbjct: 125 HIEELLGRFIATPHKAKHLLVGIRKLVYVALRQDWIEIDPTAAVEWRPA--YAGWKAWSR 182

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC----------RAGVQHLQNNI--FSI 224
           E M QF++ W  G+  R  +   L+ G R  D            R  +  ++ +   F I
Sbjct: 183 EAMAQFENRWQLGTAARTCYGLALWLGNRRGDVAGLRWDQRVTRRVFIDGVERHFDGFDI 242

Query: 225 -----KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK 279
                K +  G  + V +     ++L       ET  +N   +  +A   +         
Sbjct: 243 VQGKNKGRTGGKRLFVPITPMLSEILDAADRRGETVLVNAYGEPFSAKSLTGMMAHWCKL 302

Query: 280 AGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
           AG+ K  + HG+RK      A+A A+  ++M   G   +D AE Y++ A ++RL ++   
Sbjct: 303 AGLPKGLTLHGLRKSLGVYLAEAEASTRQMMDVLGHDDIDHAELYSREASQVRLAVQGMD 362

Query: 338 RISSVV 343
           R+  +V
Sbjct: 363 RVVRLV 368


>gi|299133965|ref|ZP_07027159.1| integrase family protein [Afipia sp. 1NLS2]
 gi|298591801|gb|EFI52002.1| integrase family protein [Afipia sp. 1NLS2]
          Length = 169

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 48/133 (36%), Positives = 70/133 (52%)

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF 255
           F+  LY+GLR  D+ R G QH+++ I ++ T+KTG  +T+ +       L   P G   F
Sbjct: 2   FDIFLYTGLRRGDAARLGRQHVRDGIITLDTEKTGVRVTLPVLPELQATLDAGPTGDLAF 61

Query: 256 FINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKT 315
                   M        F+     AGV KSAHG+RK +AT +A+ GAT  +L A +GW+ 
Sbjct: 62  IATASGNPMAKESVGTLFREACLAAGVRKSAHGLRKAAATNAANHGATVAQLEAIFGWEG 121

Query: 316 VDQAETYTKGADR 328
              A  YT+ A+R
Sbjct: 122 GRMASLYTRSANR 134


>gi|126737075|ref|ZP_01752810.1| Integrase [Roseobacter sp. SK209-2-6]
 gi|126721660|gb|EBA18363.1| Integrase [Roseobacter sp. SK209-2-6]
          Length = 332

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 83/325 (25%), Positives = 141/325 (43%), Gaps = 16/325 (4%)

Query: 10  FVTKERTRHGKIIYYFRKGHGRRIRLPY-PHESTFIPAYMSALTGSTPKREYINSPRKKP 68
           F T +R + G++  YFRK  GR +RLP  P+   +   Y   + G     +         
Sbjct: 6   FTTTKRVK-GRLYQYFRK-DGRYVRLPDDPNSEEYDREYWRLMRGGGALSQRF------- 56

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128
            T + LI  Y++S  W  LA  ++  +    + +    G  D  K+    I     + KH
Sbjct: 57  -TFEKLIQSYKRSPRWEGLAPRTKADYSKVLEYLAGTIGQKDPTKMRRSTIIEAQMANKH 115

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
               A      + +LF+ AV  ++   NP   +E+ K   EG +PW K  +  F+   + 
Sbjct: 116 RARFANYIPHMLSILFEHAVDLDWQRDNPAKGIEKIK-TGEGHKPWPKPAVATFRK--NV 172

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248
               RLAFE  L +G R SD  R     ++++   +   KTG  + +   D    +L  T
Sbjct: 173 RGLERLAFELALGTGQRASDLTRMKWSDIEDDGIWVTQGKTGVRLWIPFTDSLRAILDET 232

Query: 249 PIGKETFFINNDKQKMNATQF--SIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHE 306
           P     + +++D  +     +    + KA+          HG+R  +A   A+AG T H+
Sbjct: 233 PRKSLHWILSDDFGRQLGYDYIQKKFLKARKELGLEGYGFHGLRYSAAGELAEAGCTDHQ 292

Query: 307 LMATYGWKTVDQAETYTKGADRIRL 331
           + A  G K++   + Y+K A++ RL
Sbjct: 293 IAAITGHKSLSMIQKYSKSANQKRL 317


>gi|326385719|ref|ZP_08207348.1| integrase family protein [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326209698|gb|EGD60486.1| integrase family protein [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 359

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 79/324 (24%), Positives = 142/324 (43%), Gaps = 2/324 (0%)

Query: 7   LPPFVTKERTRHGKIIYYFR-KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
           LP +V+  R RHGK  Y FR KG  + +    P    F   Y + LT S   +    + +
Sbjct: 6   LPKWVSGFRDRHGKARYRFRRKGQAQYLFKHAPGTEEFRQEYQACLTASEAPKIQPGADK 65

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
            KP T   LI  Y +S  +   +  +++ +    ++   K G      + T+H+ + +  
Sbjct: 66  IKPGTFDDLIVRYYRSPDFLDPSPRTQVVYRGVIERWRAKYGSGRVADLETRHVAAMMAE 125

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
                +SA      +  L  +A RQ  +  NP L+ +  +    G   WT+ ++  +++ 
Sbjct: 126 MLPHRTSANMLRKRLSALMAFANRQGEIDKNPVLATKPYRIDGGGFHTWTEPEIALYEAH 185

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
              G+  RL F+ LL++G R  D    G   +Q+    I  +KT   +++ +     + +
Sbjct: 186 HPTGTMARLMFDLLLWTGQRGGDVRLLGPNAIQDKRLVITQEKTKVTVSLPILPALAQSI 245

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATA 304
             T  G++TF +    +      F   F+     AG+ + SAHG+RK +A   A+A  + 
Sbjct: 246 LATQTGEDTFLVTTHGKTFTRKGFGNKFRDWCDAAGLPHCSAHGLRKAAARRFAEARCSN 305

Query: 305 HELMATYGWKTVDQAETYTKGADR 328
            ++ A  G  T  +   YT   D+
Sbjct: 306 QQIKAWTGHTTDSEIARYTAAVDQ 329


>gi|119383712|ref|YP_914768.1| phage integrase family protein [Paracoccus denitrificans PD1222]
 gi|119373479|gb|ABL69072.1| phage integrase family protein [Paracoccus denitrificans PD1222]
          Length = 359

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 92/337 (27%), Positives = 150/337 (44%), Gaps = 25/337 (7%)

Query: 13  KERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK-KPT-T 70
           + + R  K+I Y R      IRLP     T  P ++SA       +   ++P+   PT +
Sbjct: 7   RRQKRGDKVIRYHR---ATGIRLPDDIPETH-PDFVSAWARCEAGQGQPDAPKAPAPTGS 62

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
           L      +R S  +   +   R       + I  + G    + I  KHI + +   K   
Sbjct: 63  LAAACIAFRGSPSFKEQSPVYRDILTRNIEAIRGEYGHVAIKAIKAKHISADLA--KLAG 120

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           +  +  L + R +   A R   +  +P L+V+ PK K +G + WT+ D++ F+  W  G+
Sbjct: 121 TRPLSRLKTWRKVMDHARRTGLIEEDPSLTVKAPKVKLKGHQVWTEGDIEVFRGKWKIGT 180

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHL-QNNIFSIKTQKTGTII----TVELPD------ 239
             R  FE LL++  R  D+ R G QH+ ++ + S +  KTG +     T  LP+      
Sbjct: 181 VQRACFELLLWTAARTVDAVRIGPQHVGKDGVLSFRQSKTGGMAYVPWTATLPNWGAGWA 240

Query: 240 ----GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSA 294
                 M+ L     G  TF      +  +    S    A A +A +  ++AHG+RK   
Sbjct: 241 DERREMMEALRCL-AGGLTFLQARGARPRSEKGLSNLISAAAREAKLEGRTAHGLRKARL 299

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           T  A+AG +AH + +  G KT+ +A  YT+ AD  RL
Sbjct: 300 TRIAEAGGSAHAIKSWGGHKTLAEAAHYTESADAKRL 336


>gi|46205283|ref|ZP_00209783.1| COG0582: Integrase [Magnetospirillum magnetotacticum MS-1]
          Length = 300

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 108/219 (49%), Gaps = 6/219 (2%)

Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
           +R   +SR+ TP++A   L ++R LF WAV  +    +P   V+R +  ++G   W+  +
Sbjct: 1   MRQMRDSRRGTPAAANTLLKALRALFSWAVEHDLAPGDPTREVKRVRYASKGHHSWSLTE 60

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL- 237
           ++ +++    G++ RLA   LLY+  R  D  R G +H+          K      V + 
Sbjct: 61  VEAYEAVHPLGTKARLALALLLYTAGRREDVVRLGPRHVSAGRMRYVQAKNEHRAPVAMD 120

Query: 238 ----PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKF 292
               PD    + ++ P    +F   +  +  +   F   FK    +A + + SAHG RK 
Sbjct: 121 IPIHPDLAEAIASVPPSSCPSFLETDYGRSFSPNGFGNRFKEWCIQAALPHCSAHGCRKA 180

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           +A   A+ GAT H++MA  G +T+++ E YT+ A R RL
Sbjct: 181 TAARLAERGATPHQIMAITGHRTLEEVERYTREAQRARL 219


>gi|119385371|ref|YP_916427.1| phage integrase family protein [Paracoccus denitrificans PD1222]
 gi|119375138|gb|ABL70731.1| phage integrase family protein [Paracoccus denitrificans PD1222]
          Length = 335

 Score = 90.1 bits (222), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 63/265 (23%), Positives = 116/265 (43%), Gaps = 6/265 (2%)

Query: 67  KPTTLKWLISEYRKSAHWGSL---AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
           K  T  W +  Y  S +W  L   +  +R + ++   + +R  G+     IT + I + +
Sbjct: 63  KSGTFAWAVDLY-TSGNWKWLNEYSEGTRKARQAILKRYVRAQGNRPLSAITPRDIENAL 121

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
            ++      A+    ++R +F+   R  ++  NP + +E  +  +  +     +D+  F 
Sbjct: 122 YAKGG--HGAVNDFKALRPVFEHVKRLGFITRNPMIGIELDRPMSNELPTADADDIAAFI 179

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
             W  G+  RL F+  LY+G   +D    G  +++ N+      KTG    V +      
Sbjct: 180 KRWEVGTVERLIFDLGLYTGAARADLAVIGRHNIKGNVLIFNRVKTGVPSYVPITPELRA 239

Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGAT 303
           ++A TP    TF ++  ++          F+  A  AG+    HG+RK      A+ G T
Sbjct: 240 VIARTPDISPTFILSKWRKPYQPQSLGQRFEEAAVAAGMKARLHGLRKAFCVYWAENGKT 299

Query: 304 AHELMATYGWKTVDQAETYTKGADR 328
            H++ A  G  T+ + E YT+ ADR
Sbjct: 300 VHQIAAMAGHLTLKEVERYTRAADR 324


>gi|315122637|ref|YP_004063126.1| integrase family protein [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|313496039|gb|ADR52638.1| integrase family protein [Candidatus Liberibacter solanacearum
           CLso-ZC1]
          Length = 102

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 41/98 (41%), Positives = 60/98 (61%)

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199
           M V+FKWAV +  V  NP   V R   KT+G   WT E ++QF+ +   G +  LA E +
Sbjct: 1   MAVVFKWAVSRGLVKSNPTSGVSRQPWKTKGFHTWTIEQIEQFRKYHPIGKKASLALEMM 60

Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237
           L+ GLR SD  R G+QH+++ + SI+TQKTG  + + +
Sbjct: 61  LFLGLRRSDVMRVGIQHIKDEVMSIETQKTGVYVHIPI 98


>gi|119386802|ref|YP_917857.1| phage integrase family protein [Paracoccus denitrificans PD1222]
 gi|119377397|gb|ABL72161.1| phage integrase family protein [Paracoccus denitrificans PD1222]
          Length = 335

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 78/323 (24%), Positives = 138/323 (42%), Gaps = 16/323 (4%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
           LP +V  +  R    +Y+ R G  +R+    P  + F   Y   + G  P      +P++
Sbjct: 5   LPAYVYAKGKR--GYLYFCRWGKTQRM-YAAPGTAEFAAEYALLMRGRPP------APKR 55

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
              T+K LI +Y +S  W +LA N++ S+  +F  +   +G  D   + T HI    ++ 
Sbjct: 56  ---TIKGLIQKYMESERWPALAQNTKKSYRRHFGYLEEVAGHIDPATLRTAHIYEMRDAL 112

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
           + TP+ A + + ++  L    VR  ++  NP   VE+ K       PW    ++ F+   
Sbjct: 113 RDTPTDANRKIGTLSTLLAHGVRIGWLDRNPAEGVEKLKGLRPPREPWPDTKIKAFRG-- 170

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
                P L FE LL +G R  D  +     +++    ++ QKTG  I V   D    +L 
Sbjct: 171 EAAPLPLLIFEMLLGTGQRIGDVLKMRWDDIEDGGIWVRQQKTGAGIFVPFTDELAAILE 230

Query: 247 MTPIGKETFFIN-NDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSAT-ISADAGATA 304
            TP   +T     N +    +    +  + +     +    H +R  +A  I++  G + 
Sbjct: 231 QTPRQGDTIIAQPNGRPCSYSFAHKLVTEVRVKIDAMAWDIHALRHSAAAEIASLPGMSI 290

Query: 305 HELMATYGWKTVDQAETYTKGAD 327
             +MA  G  +   A  Y++ AD
Sbjct: 291 EHVMAITGHSSEQMARHYSRKAD 313


>gi|83311808|ref|YP_422072.1| integrase [Magnetospirillum magneticum AMB-1]
 gi|82946649|dbj|BAE51513.1| Integrase [Magnetospirillum magneticum AMB-1]
          Length = 335

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 84/331 (25%), Positives = 141/331 (42%), Gaps = 23/331 (6%)

Query: 10  FVTKERTRHGKIIYYFRKGH--GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK 67
           +VT+ +  H    YY R G   GR   LP   E     A ++A      K   +      
Sbjct: 3   YVTETKPGH---FYYRRNGRYWGRLPGLPGSIEFATEYARLNASFADVGKTPAV------ 53

Query: 68  PTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
           P T   ++  Y  S  +  +L   ++ ++    D +  + G F    I  KH+    +  
Sbjct: 54  PGTFDAMVEAYLASGEYRQNLKQKTKDAYRYDLDILRTRFGKFRVADIEVKHVLKMRDFF 113

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC--LSVERPKRKTEGIRPWTKEDMQQFKS 184
              P  A   + ++RV+F W + +  +  NP     V   K K    +PW    + +F+ 
Sbjct: 114 ADKPGKANTLVRTLRVVFGWGIGRGLMKTNPADLKGVNVKKLKIGAHKPWAPAALAKFR- 172

Query: 185 FWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
             +EG QP   LAFE  L +G R  D  R     + + +  +  +KTG  + + +     
Sbjct: 173 --AEG-QPHLVLAFELGLATGQRQGDLIRLRWDDISDGVVHVAQEKTGKELWLPVSKHLA 229

Query: 243 KLLAMTPIGKETFFINNDKQK-MNATQFSIWFKAKATKAGVNKSA-HGVRKFSATISADA 300
            +LA  P    T  +N+     + A   +  F A+ T+ G++    HG+RK +A   AD 
Sbjct: 230 GVLARAPRQAVTVLVNSRGTPWIKANPLAQAFGAEITRLGLDGLVFHGLRKTAAVALADV 289

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRL 331
           G +  ++ A  G ++    E YT+GAD+ RL
Sbjct: 290 GCSTKQIAAVTG-QSDQMVEHYTRGADQKRL 319


>gi|220922881|ref|YP_002498183.1| integrase family protein [Methylobacterium nodulans ORS 2060]
 gi|219947488|gb|ACL57880.1| integrase family protein [Methylobacterium nodulans ORS 2060]
          Length = 351

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 90/328 (27%), Positives = 150/328 (45%), Gaps = 29/328 (8%)

Query: 11  VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
           V + R RHGK   Y R   G+ I+ PY   +    A ++ L G   K+E    PR    T
Sbjct: 10  VKRYRDRHGKWRNYHR-ATGKPIKAPY--GTAEFAAEVAELNGLVSKKE---PPRN--GT 61

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH---IRSGVESRK 127
           L+ ++ EY+ +  +  LA+ +R  +E YF +I +   D   + I +     IR  V + K
Sbjct: 62  LRGVMDEYKTTPAFADLAMATRAGYERYF-EIAKPLHDVPIQSIDSAGLSVIRDKV-AMK 119

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR---KTEGIRPWTKEDMQQFKS 184
               +A   L+ + VLF +A+ ++YV  NP   V+R KR   K +  RPW+   +++ K+
Sbjct: 120 RGWRTANYMLSVLSVLFGFAIERKYVTQNPAFVVKRAKRDKTKPKANRPWS---LEERKA 176

Query: 185 FWSEG-SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
             +E  S  ++     +++G+R  D+       ++    +I T KTG  I + +     +
Sbjct: 177 VLAEAPSHLKVPLALAMFTGVRKRDALTLRKDAIRGG--AIATSKTGEEIFIRIHPELAE 234

Query: 244 LLAMTPI-GKETFFINNDKQKMNATQF-SIW--FKAKATKAGVNK---SAHGVRKFSATI 296
           +LA  P     T    +       T F S+W  FK K    G  +   + HG+R      
Sbjct: 235 ILAGAPPHAAPTIAATSRGTPWTETGFNSVWDKFKDKLEAEGRVRPGLTIHGLRHTLGGH 294

Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324
            ADAG     +    G KT+  A+ Y++
Sbjct: 295 LADAGCDLDTIRRVLGQKTLTMAQLYSE 322


>gi|254476705|ref|ZP_05090091.1| phage integrase [Ruegeria sp. R11]
 gi|214030948|gb|EEB71783.1| phage integrase [Ruegeria sp. R11]
          Length = 332

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 84/327 (25%), Positives = 140/327 (42%), Gaps = 21/327 (6%)

Query: 12  TKERTRHGKIIYYFRKGHGRRIRLPY-PHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
           T  +T  G+   YFRK  GR +RLP  P+   +   Y   + G        + P  +  T
Sbjct: 7   TSSKTIKGRTYQYFRK-DGRYVRLPDDPNSEEYDREYWRLMRG--------DGPLSQRYT 57

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
            + LI  Y++S  W SLA  +R  +    + I  K G  D  K+    I     + +H  
Sbjct: 58  FEKLILSYKQSPRWESLAPRTRADYSRVLEYISDKLGSKDPTKMRRSTIIDAQMANRHRA 117

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
             A      + +LF+ ++  ++   NP   + + K   EG RPW    +  ++       
Sbjct: 118 RFANYIPHMLSILFEHSIDLDWQRDNPAKGISKIK-TGEGHRPWPTSAITAYRKH--ANG 174

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250
              L FE  L +G R SD  R   +H+++    +   KT   + +       +L A+   
Sbjct: 175 LALLIFELALGTGQRASDLTRMEWEHIEDGGIWVTQGKTKARLWLPFT---ARLAAVIDA 231

Query: 251 GKETF--FINNDK--QKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAH 305
            ++T   FI  D+   ++N  Q      A    A + + S HG+R  +A   A+AG T  
Sbjct: 232 SQKTSAKFILADRFGNQLNYDQLQKKVMAVRRIANLTEYSLHGLRYSAAGELAEAGCTDQ 291

Query: 306 ELMATYGWKTVDQAETYTKGADRIRLG 332
           ++ A  G K++   + Y+KGA + RL 
Sbjct: 292 QIAAITGHKSLSMVQKYSKGASQKRLA 318


>gi|126461390|ref|YP_001042504.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17029]
 gi|126103054|gb|ABN75732.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17029]
          Length = 389

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 61/224 (27%), Positives = 104/224 (46%), Gaps = 11/224 (4%)

Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
           I++G+ +   TP  A + L  +  L   AV+ E    NP   V+R K  + G   WT+ +
Sbjct: 144 IKAGLSA---TPQKAKKTLKRLSQLMDLAVKLEMRGDNPVKGVDRYKTGSGGFHAWTEAE 200

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-----GTII 233
           + +F   +  G+   L+   +LYSG    D+ + G  +++      + QKT     G ++
Sbjct: 201 IARFFEVYLPGTPAFLSMTLMLYSGASRCDAVKLGWGNIRGGRLEYRRQKTRKNPEGILV 260

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKF 292
           ++ +     + L   P G  TF      +   AT      +    KAG+   S+HG+RK 
Sbjct: 261 SIPVHPFLAEALQAVPNGAFTFLQTEQGKSRTATGLGTAMRKWCDKAGLPLCSSHGLRKA 320

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
                A+AG  AHE+M+  G  T+ +A+ Y +  D  R G+ +S
Sbjct: 321 ICRRIAEAGGEAHEIMSVSGHITLAEAQRYCE--DFGRKGLADS 362


>gi|83951418|ref|ZP_00960150.1| Integrase/recombinase [Roseovarius nubinhibens ISM]
 gi|83836424|gb|EAP75721.1| Integrase/recombinase [Roseovarius nubinhibens ISM]
          Length = 352

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 89/328 (27%), Positives = 146/328 (44%), Gaps = 28/328 (8%)

Query: 19  GKIIYYFRKGHGRRIRLPY-PHES-TFIPAYMSAL-TGSTPKREYINSPRKKPTTLKWLI 75
           G   YY RK    ++ L   P +S  F+  Y +A+ T  TP R   +S       L  +I
Sbjct: 9   GTTYYYLRKRGQSKVPLGKGPIDSPEFLSRYSAAMGTKKTPSRAAKDS-------LGHII 61

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQ 135
             ++ SA++ + +   R +   + D +    G   + +I   HIRS +   + +P +A  
Sbjct: 62  ELFKASANYRAYSEAYRGTLGRHSDALKECYGSAPFSEIKPHHIRSDLS--QLSPHAAND 119

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKR-KTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
            L   R+L ++A    +        ++R K  KT+G RPW+  D+  F++ W  GS  RL
Sbjct: 120 RLKIWRLLCQYAYDHNFADHVASDGIKRGKLPKTDGHRPWSTADVNAFRAKWEIGSVQRL 179

Query: 195 AFEFLLYSGLRCSDSCRAGVQHL-QNNIFSIKTQKTGTIITV----ELPDGFMK------ 243
            FE L ++  R  D+       +  + + +    KTG    V     LP G+ K      
Sbjct: 180 CFELLFWTAARTIDAVTLTPSMIGADGVLTFTQAKTGGKAYVPWNCALP-GWAKHFETDR 238

Query: 244 --LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADA 300
             L A       TF   ++ +  +    S    A A +A +   SAHG+RK   T  A+A
Sbjct: 239 TLLKACITSTTFTFLETSNGRARSRKGLSNIISAGAAEAKLTGLSAHGLRKSRLTAIAEA 298

Query: 301 GATAHELMATYGWKTVDQAETYTKGADR 328
           G +A  +M+  G K++ +AE Y   A+R
Sbjct: 299 GGSASAIMSWGGHKSLKEAEDYVSTANR 326


>gi|315121819|ref|YP_004062308.1| phage-related integrase/recombinase [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495221|gb|ADR51820.1| phage-related integrase/recombinase [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 83

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 36/56 (64%), Positives = 47/56 (83%)

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
           S TIS ++GAT+H+LMATYGWK++ QAETYTKGADRI+LGIK SRR++  + +  P
Sbjct: 21  SITISFESGATSHDLMATYGWKSITQAETYTKGADRIQLGIKTSRRMADSLTNPKP 76


>gi|332186915|ref|ZP_08388656.1| phage integrase family protein [Sphingomonas sp. S17]
 gi|332012925|gb|EGI54989.1| phage integrase family protein [Sphingomonas sp. S17]
          Length = 357

 Score = 79.0 bits (193), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 83/335 (24%), Positives = 139/335 (41%), Gaps = 21/335 (6%)

Query: 11  VTKERTRHGKIIYYFRKGHGRRIRLPY-PHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
           VT    RHGK+   FRK     + + + P E  F   Y + L      R  I      P 
Sbjct: 8   VTVNPDRHGKLRARFRKTGRPAVYMKHLPDEKGFKEEYEALLA----NRPLIVVRPAVPG 63

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHI---- 119
           ++  L+S Y  S  +         +   Y     R+        DF +  I    +    
Sbjct: 64  SVGDLVSRYYASGDFKGRGTAETQARRKYLIDSFRQDVADDLVSDFGFEHIEAILLARTE 123

Query: 120 RSGVESRKHTPS---SAIQFLTSMRVLFKWAVRQEYVAINPCL-SVERPKRKTEGIRPWT 175
           +   E+RK       +A++    +R LF +A + +++  NP   +    K+K  G   WT
Sbjct: 124 KRWDETRKRMMGGEVAAVKLRKELRRLFAYAKKLKWIEQNPVEEAAPIGKQKLTGFHTWT 183

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
           ++++ QFK+    G++ RLA E +L++G R  D+   G  H+     +    K    + +
Sbjct: 184 EDEISQFKARHPIGTRARLALEIMLWTGQRRGDARLFGPAHVVRGKINFTAAKNQADLWL 243

Query: 236 EL-PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFS 293
            + PD    + AM  IG  TF +    +      F    +    +AG+ + +AHG+RK  
Sbjct: 244 PIAPDLRRAIDAMDSIGLRTFLVTTAGKTFTKDGFGNKMREWCDEAGLPQCTAHGLRKAI 303

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
               A + AT  E+ A  GWK   +   YT  A++
Sbjct: 304 GRRMAQSQATQLEIKAVGGWKGDSEVAIYTAAAEQ 338


>gi|315122003|ref|YP_004062492.1| phage-related integrase/recombinase [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495405|gb|ADR52004.1| phage-related integrase/recombinase [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 98

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 38/72 (52%), Positives = 47/72 (65%), Gaps = 4/72 (5%)

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAG 301
           MK+L +TP G+ETF +  +K+KMNA QFS+W K K  KAG+ KSAHGVRK SAT+     
Sbjct: 1   MKILEITPTGRETFILKREKEKMNAFQFSLWLKEKDKKAGIKKSAHGVRKLSATLF---- 56

Query: 302 ATAHELMATYGW 313
               EL  T  W
Sbjct: 57  KLKRELQLTSSW 68


>gi|260427090|ref|ZP_05781069.1| phage integrase family protein [Citreicella sp. SE45]
 gi|260421582|gb|EEX14833.1| phage integrase family protein [Citreicella sp. SE45]
          Length = 357

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 83/351 (23%), Positives = 146/351 (41%), Gaps = 34/351 (9%)

Query: 5   LRLPPFVTKERTRHGKIIYYFR-KGHG-RRIRLPY-PHESTFIPAYMSALTGSTPKREYI 61
           ++ P +V ++R   G+ ++  R KG+  RR+ +P  P +  F   Y +A  G +P  E +
Sbjct: 3   VQFPGYVPEKRG--GRTLHRVRVKGNAARRVTIPVGPEDPQFSALYHAARRGESP--EVV 58

Query: 62  NSPRKKPTTLKWLISEYR-------KSAHWGSLAVNSRISFESYFDQIIRKSG------- 107
                   +L  L+  Y        +      L    R S       +   SG       
Sbjct: 59  KQSLAPAMSLDALVDAYLELLESDVRHGQASRLTHRQRKSLLKRACDMPDDSGTGRMGAL 118

Query: 108 DFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167
             D   +  +HI +   +R     + I+   ++R  +    R +++  NPC+ ++R  R 
Sbjct: 119 HCDLPPVALRHIIAQWGARTAQADNTIK---ALRAAYD---RMDWLDANPCVGIKRVHRS 172

Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG----VQHLQNNIFS 223
             G  PW+  D+Q F     +G+  R+     L++G R SD  + G    V+        
Sbjct: 173 KGGTTPWSTGDVQAFMKAHPQGTSARVWLMLALFTGARLSDLAKLGRANEVRRDGMTWIE 232

Query: 224 IKTQKTGTIIT-VELPDGFMKLLAMTPIGKETFFINNDKQKM-NATQFSIWFKAKATKAG 281
            +  K G+  T + +     + +  T +   T+ +N   Q   N    +   +     AG
Sbjct: 233 WQPSKRGSSHTSMPMAPQLAEAVRATGVIGRTYILNQQGQPFANGPVLAERVRRWTADAG 292

Query: 282 VN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           +  +S+HG+RK    I ADAGAT H++M+     +   +  YTK A R RL
Sbjct: 293 LERRSSHGLRKALGGILADAGATEHQIMSVLSHASPTTSAIYTKSAQRARL 343


>gi|319405344|emb|CBI78962.1| phage-related integrase/recombinase (fragment) [Bartonella sp. AR
           15-3]
          Length = 140

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 71/129 (55%), Gaps = 2/129 (1%)

Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TI 232
            +ED+ Q+   W+  +  R+  + LLY+GLR  D+ R   + +++NI  +KT+K+   T 
Sbjct: 2   VREDIDQYYHCWAHATHERVWIDVLLYTGLRRDDAVRIAWKCVKDNIIHLKTEKSQFKTD 61

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKF 292
           + + +     + L + PIG ETF  +   +++    F   F+     A + KSAHG+RK 
Sbjct: 62  VFLSILPKLAETLKIGPIGNETFIRSKGNKQLTKESFGKLFRGACNIASIKKSAHGLRKL 121

Query: 293 SATISADAG 301
           +AT + ++G
Sbjct: 122 AATSAENSG 130


>gi|153009491|ref|YP_001370706.1| phage integrase family protein [Ochrobactrum anthropi ATCC 49188]
 gi|151561379|gb|ABS14877.1| phage integrase family protein [Ochrobactrum anthropi ATCC 49188]
          Length = 297

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 104/219 (47%), Gaps = 7/219 (3%)

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           TP+ A  F+ ++ V++ WA ++  V+ NP   +++   K +G  PW  +D+++F +    
Sbjct: 73  TPAQADAFIEAVGVMYDWAKKRNLVSSNPAKGIDKVYIKGDGAIPWKADDVKKFFAKHKP 132

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQH--LQNNIFSIKTQ---KTGTIITVELPDGFMK 243
           GS+  +A   LL++G R  D    G ++  +   I +++ Q   K  + ++V L      
Sbjct: 133 GSKAHVAMSVLLWTGCRIEDLAVLGRKNECVIEGIEAVRWQPSKKGSSEVSVPLLPALKT 192

Query: 244 LLAMTPIGKETFFIN-NDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAG 301
                 +   T+ +    K   +    S  FK     A +   SAHGVRK  A + A+ G
Sbjct: 193 ATCTPTVQGGTYVLGRGGKPFASGDSMSAMFKRWCKDADLPLLSAHGVRKGLAELLAEQG 252

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
            + +E+MA  G      +E YT+  +R +L +    R++
Sbjct: 253 CSQYEIMAILGHSEAKTSEVYTRRVERWKLALGAVERVN 291


>gi|265984520|ref|ZP_06097255.1| integrase/recombinase [Brucella sp. 83/13]
 gi|306839293|ref|ZP_07472110.1| integrase/recombinase protein [Brucella sp. NF 2653]
 gi|264663112|gb|EEZ33373.1| integrase/recombinase [Brucella sp. 83/13]
 gi|306405840|gb|EFM62102.1| integrase/recombinase protein [Brucella sp. NF 2653]
          Length = 333

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/233 (23%), Positives = 108/233 (46%), Gaps = 10/233 (4%)

Query: 4   SLRLP-PFVTKERTRHGKIIYYFRKGHGRRIRL--PYPHES-----TFIPAYMSALTGST 55
           S R+P  + +++  RHG   +Y R     + R+   Y  E+      F   Y   L G  
Sbjct: 12  SQRVPFKYCSRDIDRHGNERFYLRLPGMPKYRMTSAYLDEAGSITQAFTEEYHRVLAGGR 71

Query: 56  PKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT 115
            ++  +   R +P +++WL+  Y +S  + S +  ++   +S  ++     G+  ++KI 
Sbjct: 72  GEKA-VPISRLEPGSVRWLVETYYRSKAFQSQSPATQKDKKSVLNRYCLNVGELPFKKIR 130

Query: 116 TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
              I +    R  TP +A + +  ++ LF WA+  E     P   V +   ++ G   W+
Sbjct: 131 KSDIEASQMKRSGTPGAADKLVKYLKALFNWAISAELATFTPANGVTK-IHQSPGFHTWS 189

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
           + ++ ++++ +  GS  RLA E +L  G+R SD  + G ++L  +      +K
Sbjct: 190 EAELARYRAAYPLGSMARLAMELMLNLGVRRSDLVKLGWRNLVGDRIEFMPEK 242


>gi|254476808|ref|ZP_05090194.1| phage integrase [Ruegeria sp. R11]
 gi|214031051|gb|EEB71886.1| phage integrase [Ruegeria sp. R11]
          Length = 333

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 81/326 (24%), Positives = 137/326 (42%), Gaps = 25/326 (7%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPY-PHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
           +T  G++ YYFR+G   + RLP  P    F  AY +  +G   K        K  TT + 
Sbjct: 13  KTVKGRVYYYFRRGETYQ-RLPNDPDSQEFDDAYWAIRSGRAKK--------KTKTTFEA 63

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           LI  Y ++  +       R  +    + I  K+G  D+ K+  + + +  ++   T   A
Sbjct: 64  LIVSYYQTPEFKDRKPRVRQEYRRTLELIREKNGPKDFTKLRRRDVIAARDAYSDTWRKA 123

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
              +  + +L + A+  E++  NP   V+  K K    +PW    ++ F+++    +   
Sbjct: 124 NAMVEMISILSRHAIDLEWITANPASGVK--KLKGGEYQPWPAAKLRAFEAYCENNA--- 178

Query: 194 LAFEFLLY-----SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248
           L +E   Y     +G R  D       H      S+  +KT   + V  P+   K L   
Sbjct: 179 LEWELTAYMLGVGTGQRIGDVIGMEWAHYDGQFISVVQEKTAARLWVACPEFLRKYLDGL 238

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA---HGVRKFSATISADAGATAH 305
           P  K  F I     K  A + +I  +  A +  +   A   HG R  +A   A+AGA+  
Sbjct: 239 P-RKGRFIIAQSLHKGVAKR-TIQQRVMAVRKEIGAQAFVIHGWRYTAAVHLAEAGASDS 296

Query: 306 ELMATYGWKTVDQAETYTKGADRIRL 331
           E+ A  G KT++  + Y   A++ RL
Sbjct: 297 EIQAVTGHKTLEMVKKYRSQANQKRL 322


>gi|260433594|ref|ZP_05787565.1| phage integrase family protein [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260417422|gb|EEX10681.1| phage integrase family protein [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 374

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 80/322 (24%), Positives = 135/322 (41%), Gaps = 10/322 (3%)

Query: 17  RHGKIIYYFR-KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75
           RHG   + +R KG    +   Y  +  F   Y +AL     K +   + R  P T   L+
Sbjct: 18  RHGNRRWRYRCKGFSAELGTDYGSDE-FERRYQAALNHQKEK-QANGAGRSVPGTFDDLV 75

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQ 135
           + + +   +  L   ++  + +  + + R+ G      +  +H+         TP+ A +
Sbjct: 76  ARFYQ-LKFPELEEITKRDYRAVIEPLRRQHGHKRVAGMRQRHVLEIKAQLSSTPAQANK 134

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195
            L  +  L K AV+ E+ + NP   VE  +  + G   WT++++ +F +    GS   LA
Sbjct: 135 TLKRLSQLMKLAVQLEWRSDNPVSGVEFYQTGSSGYHTWTEDEIARFYAKHERGSLAYLA 194

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIF---SIKTQKTGTIITVELP--DGFMKLLAMTPI 250
              +LY+G    D+   G  +++         KT+K    I V +P        L   P 
Sbjct: 195 MTLMLYTGASRKDAVALGRGNIRGGRLIYRRSKTRKNPNGIEVNIPVHPTLADALETVPE 254

Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMA 309
           G  TF   N KQ  +        +    KAG+   S+HG+RK      A+AG T  E+M+
Sbjct: 255 GAFTFLETNRKQARSPNGLGNDMREWCDKAGLPMCSSHGLRKAICRRIAEAGGTPFEIMS 314

Query: 310 TYGWKTVDQAETYTKGADRIRL 331
             G  T+  A+ Y +   R  L
Sbjct: 315 VSGHITLAMAQHYCEAFGRKNL 336


>gi|85707546|ref|ZP_01038619.1| Phage related integrase [Roseovarius sp. 217]
 gi|85667933|gb|EAQ22821.1| Phage related integrase [Roseovarius sp. 217]
          Length = 339

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 73/319 (22%), Positives = 127/319 (39%), Gaps = 21/319 (6%)

Query: 15  RTRHGKIIYYFRKGHGRRI---RLP-YPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
           +T  G+   YFR   G ++   RLP  P    F+ AY +  +G    R+ + S     TT
Sbjct: 12  KTVKGRDYIYFRLDRGSKVTRHRLPSNPDSEEFMQAYWAIRSG----RKKVQSK----TT 63

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
              L++E+ K+  +   A  +R ++  + + I  K+G+ D ++   K   +   + + T 
Sbjct: 64  WHNLVTEFYKTPGYLGKAKGTRENYRRHCEAIREKNGEKDVQRFKRKDALAVQRALQDTW 123

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS--E 188
           S A + +  + +L K AV  E++  NP + +  PK       PW  + +  ++ +    +
Sbjct: 124 SKANERIAVLSILCKLAVDLEWIDRNPVVDI--PKLSGGEYEPWPDDKLTAYERYCDRHD 181

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248
            +  R  +E  + +G R  D              S+   KTGT +T+  P      L   
Sbjct: 182 LTDARTIYELCIGTGQRIGDCVAMRWDDFDGEFMSVVQDKTGTKLTIYCPARLQTYLCTL 241

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA-----HGVRKFSATISADAGAT 303
           P         N  Q M         +   T   +         HG R  +A   +DAG  
Sbjct: 242 PRKGRHIMAKNLTQPMGKRAAQKAVEGVRTALDIMHGEARLVPHGWRYTAAVQLSDAGCD 301

Query: 304 AHELMATYGWKTVDQAETY 322
             E+ A  G KT++    Y
Sbjct: 302 DAEIQAVTGHKTMEMVRKY 320


>gi|163736741|ref|ZP_02144160.1| phage integrase [Phaeobacter gallaeciensis BS107]
 gi|161390611|gb|EDQ14961.1| phage integrase [Phaeobacter gallaeciensis BS107]
          Length = 333

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 77/326 (23%), Positives = 137/326 (42%), Gaps = 25/326 (7%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPY-PHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
           +T  G++ YYFR+G   + RLP  P    F  AY +  +G         S ++  TT + 
Sbjct: 13  KTVKGRVYYYFRRGETYQ-RLPNDPDSQEFDNAYWAIRSG--------RSQKQTKTTFEA 63

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           LI  Y ++  +       +  +    + I  K+G  D+ K+  +++ +  ++   T   A
Sbjct: 64  LIVSYYQTPEFKDRKPRVQQEYRRTLELIREKNGPKDFTKLRRRNVIAARDAYADTWRKA 123

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
              +  + +L + A+  E++  NP   V+  K K    +PW    ++ F+++   GS   
Sbjct: 124 NAMVEMISILSRHAIDLEWITANPASGVK--KLKGGEYQPWPAAKLRAFEAYCESGS--- 178

Query: 194 LAFEFLLY-----SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248
           L +E   Y     +G R  D       H      S+  +KT   + V  P+     L   
Sbjct: 179 LEWELTAYMLGIGTGQRIGDVIGMEWAHYDGQFISVVQEKTAARLWVACPEFLRTYLDNL 238

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA---HGVRKFSATISADAGATAH 305
           P  +   FI          + +I  +  A +  +   A   HG R  +A   A+AGA+  
Sbjct: 239 P--RSGRFIIAQSLHKGVAKRTIQQRVMAVREKIGAQAFVIHGWRYTAAVHLAEAGASDS 296

Query: 306 ELMATYGWKTVDQAETYTKGADRIRL 331
           E+ A  G KT++  + Y   A++ RL
Sbjct: 297 EIQAVTGHKTLEMVKKYRNQANQKRL 322


>gi|299132356|ref|ZP_07025551.1| phage integrase [Afipia sp. 1NLS2]
 gi|298592493|gb|EFI52693.1| phage integrase [Afipia sp. 1NLS2]
          Length = 205

 Score = 72.8 bits (177), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 82/165 (49%), Gaps = 6/165 (3%)

Query: 99  FDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158
            D    + G+  Y+ +  KHIR   ++R   P SA  F+ ++R +FK+AV  +YV  N  
Sbjct: 41  LDNFCAEDGEKPYKLLLPKHIRKRRDARADRPESANAFIKALRQVFKYAVDNDYVVSNLA 100

Query: 159 LSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218
            +V   K K +G   W  E++++F+     GS  RLA   ++Y+G R SD+   G  H +
Sbjct: 101 QAVPYLKAKGDGHHTWMLEEVERFERTHPIGSTARLALALMIYTGQRRSDAVLLGPNHFK 160

Query: 219 NN-----IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFIN 258
           +       F  + +K  T+    LP+   +++  T  G +T  +N
Sbjct: 161 DGWLHFTQFKGRERKPITLDVPILPE-LQRIIDATACGTDTSLLN 204


>gi|149915233|ref|ZP_01903761.1| phage integrase [Roseobacter sp. AzwK-3b]
 gi|149810954|gb|EDM70793.1| phage integrase [Roseobacter sp. AzwK-3b]
          Length = 325

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 76/311 (24%), Positives = 131/311 (42%), Gaps = 22/311 (7%)

Query: 6   RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGS--TPKREYINS 63
           +LP +V   R R G   Y+ R    +RI    P  + F   Y   L G+   PKR     
Sbjct: 5   QLPKYVYA-RGRKG-YPYFIRGNTCQRI-FAEPGSNAFWAEYNRLLNGAPTAPKR----- 56

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
                 T+  LI  Y +S  W   A N+R S+E  F     K G  D   I  +H+    
Sbjct: 57  ------TINKLIEHYMRSPDWAKKAHNTRKSYERSFLYFRDKIGLVDPASIRRRHVNDMR 110

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA-INPCLSVERPKRKTEGIRPWTKEDMQQF 182
           ++   TP++A + + ++ VL   A+   +V  +NP   V++    T+    W  + ++ F
Sbjct: 111 DALSATPTTANRRVAALSVLMNHAIDIGWVEHVNPARGVKQLD-GTKTREAWPVDMVEAF 169

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
           ++  +   Q  L FE L+ +G R  D        +++N   ++  KT   + +      +
Sbjct: 170 RT--AATGQTLLLFELLIGTGQRIGDVLNMQWGQIEDNGIVVRQSKTKAEVWIPFTRRLL 227

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAG 301
            +L  TP     + IN++  ++       W      + G  +   HG+R  +A+  A  G
Sbjct: 228 DMLNKTP-RNALYIINHEGHRVAYNTAWKWVMDVRKQIGATDYDIHGLRHTAASELAALG 286

Query: 302 ATAHELMATYG 312
            T  E+M+  G
Sbjct: 287 MTDEEIMSITG 297


>gi|254719515|ref|ZP_05181326.1| integrase/recombinase protein [Brucella sp. 83/13]
          Length = 290

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/187 (22%), Positives = 88/187 (47%), Gaps = 2/187 (1%)

Query: 42  TFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ 101
            F   Y   L G   ++  +   R +P +++WL+  Y +S  + S +  ++   +S  ++
Sbjct: 15  AFTEEYHRVLAGGRGEKA-VPISRLEPGSVRWLVETYYRSKAFQSQSPATQKDKKSVLNR 73

Query: 102 IIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV 161
                G+  ++KI    I +    R  TP +A + +  ++ LF WA+  E     P   V
Sbjct: 74  YCLNVGELPFKKIRKSDIEASQMKRSGTPGAADKLVKYLKALFNWAISAELATFTPANGV 133

Query: 162 ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221
            +   ++ G   W++ ++ ++++ +  GS  RLA E +L  G+R SD  + G ++L  + 
Sbjct: 134 TK-IHQSPGFHTWSEAELARYRAAYPLGSMARLAMELMLNLGVRRSDLVKLGWRNLVGDR 192

Query: 222 FSIKTQK 228
                +K
Sbjct: 193 IEFMPEK 199


>gi|146279095|ref|YP_001169254.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17025]
 gi|145557336|gb|ABP71949.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17025]
          Length = 361

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/211 (24%), Positives = 98/211 (46%), Gaps = 10/211 (4%)

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAI-NPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +H P+ A   + S+  +++WA+ +  +A  NP   + +  R   G  P T ED+++F++ 
Sbjct: 136 RHKPAEADNLIKSISAMYRWAIDEAEIATGNPAAGIGKLNRGGGGAAPRTAEDLKKFRAK 195

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAG----VQHLQNNIFSIKTQKTGTI-ITVELPDG 240
              G+   L     +++  R  D+ + G    V+         +  K G+  ++V L   
Sbjct: 196 HPLGTTAHLWLTLQMFTACRIDDARKLGRGNEVERAGALWIEFQPGKKGSAPVSVPLLPQ 255

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK--ATKAGV-NKSAHGVRKFSATIS 297
            +K      +   T+ +  D  +  +T  S+  + +     AG+  KS+HG+RK    + 
Sbjct: 256 LLKATRAQKVQGATYLLT-DYGRPFSTAESLRNRVRKWCAAAGIEGKSSHGIRKAMGELL 314

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADR 328
           A+AG T H++MA         +E YTKG +R
Sbjct: 315 AEAGCTQHQIMAIMAHTKAKTSEIYTKGVER 345


>gi|119386436|ref|YP_917491.1| phage integrase family protein [Paracoccus denitrificans PD1222]
 gi|119377031|gb|ABL71795.1| phage integrase family protein [Paracoccus denitrificans PD1222]
          Length = 342

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 88/337 (26%), Positives = 140/337 (41%), Gaps = 27/337 (8%)

Query: 9   PFVTKERTRHGKIIYYFR----KGHGRRIR-LPYPHE---STFIPAYMSALTGSTPKREY 60
           P+VT +RT  GK  +Y+R    +G  RR R +P P +     F  AY S  +G++   E 
Sbjct: 7   PYVTLKRT-GGKARWYYRLTWFEGARRRERFIPLPDDPDSEEFDRAYWSIRSGTS---EE 62

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
           +  P+K+  T + L+  YR SA +  LA  ++ S+    + I+  + D     IT + +R
Sbjct: 63  VQRPKKE--TWRQLVMAYRGSAGFRKLAPRTQKSYNDTIEWILSANADKAVSTITKQKLR 120

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPC--LSVERPKRKTEGIRPWTKE 177
                   TP  A   +  + +L  +A  Q E+   NP   L++   +R+ E   PW + 
Sbjct: 121 DLHVKYGETPRKADMLVQMVSILVNFARTQLEWAVTNPAEGLTLYGKQREYE---PWPE- 176

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237
                K+        R A E +L +G R S +             ++  +K      +  
Sbjct: 177 --WMVKALPDAPLVVRSAAELILGTGQRPSAAIVMRRDQFHGEWMTVTDEKGDESYEIFC 234

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSA 294
           P      LA  P+  +     N  Q M        F+A  T  G      S HG+RK S 
Sbjct: 235 PQELRSYLASLPVAGQHVIPRNLTQPMRYDSVEKAFRAWRTDLGDRARPFSLHGLRKLSI 294

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
              A+AG T  E+ A    ++      Y K A+R +L
Sbjct: 295 IRLAEAGCTDAEIQAITN-QSAQTVAYYRKRANRKKL 330


>gi|254471175|ref|ZP_05084577.1| site-specific recombinase, phage integrase family [Pseudovibrio sp.
           JE062]
 gi|211959321|gb|EEA94519.1| site-specific recombinase, phage integrase family [Pseudovibrio sp.
           JE062]
          Length = 426

 Score = 69.3 bits (168), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 72/276 (26%), Positives = 117/276 (42%), Gaps = 21/276 (7%)

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI--IRKSGDFDYRKITTKHIRSGVE 124
           +P TL  LI +YR S+ +  LA  ++  ++  FD +  I  +    +       +R   E
Sbjct: 60  RPGTLGNLIDKYRASSAFLELADRTKSDYQKVFDYLAPIHNTPLTRFTSPFIVKLRDKAE 119

Query: 125 S-RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL---SVERPKRKTEGIRPWTKEDMQ 180
             RK   ++ ++ + S  VLF W   + +V  NP L   S+ +PK      RPWT ++  
Sbjct: 120 EQRKRRFANYVKQVLS--VLFSWGKERGFVKENPALGVKSIRKPKNAPIANRPWTDDE-- 175

Query: 181 QFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
             +    + + P++  A   ++Y+GL   D+     Q  QN   S +  KTG  +   + 
Sbjct: 176 --RGIVLKHAPPQMVPALTLMMYTGLGPQDALTLSKQQYQNGFISTRRAKTGAPVFWPVI 233

Query: 239 DGFMKLLAMTPI-GKETFFINNDKQKMNATQF-SIWFKAKATKAGVNK-----SAHGVRK 291
                 L   P  G  T   N+  Q    + F + W K +      N      + +G+R 
Sbjct: 234 APLKAALDDAPDHGAPTLCTNSRGQPWTVSGFRASWRKLRIQLEDKNLIKPGLTLYGLRH 293

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
             ATI  + G    +L A  G +T   A  Y KGAD
Sbjct: 294 TVATILREIGLNDRDLAAALGHETEAMARLYAKGAD 329


>gi|99081169|ref|YP_613323.1| phage integrase [Ruegeria sp. TM1040]
 gi|99037449|gb|ABF64061.1| Tyrosine recombinase xerD [Ruegeria sp. TM1040]
          Length = 333

 Score = 68.9 bits (167), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 78/327 (23%), Positives = 133/327 (40%), Gaps = 27/327 (8%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPY-PHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
           +T  G++ YYFR+G   + RLP  P    F  AY +  +G   K        K  TT + 
Sbjct: 13  KTVKGRVYYYFRRGETYQ-RLPNDPDSQEFDDAYWAIRSGRAKK--------KAKTTFEA 63

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           LI  Y ++  +       +  +    + I  K+G  D+ K+  + + +  ++   T   A
Sbjct: 64  LIVSYYQTPEFRDRKPRVQQEYRRTLELIREKNGPKDFTKLRRRDVIAARDAYADTWRKA 123

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG-IRPWTKEDMQQFKSFWSEGSQP 192
              +  + +L + A+  E++  NP   V   K+ T G   PW    +Q F++F  +    
Sbjct: 124 NAMVEMISILSRHAIDLEWITANPASGV---KKLTGGEYEPWPDAKLQAFEAFCKKHD-- 178

Query: 193 RLAFEFLLY-----SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
            L +E   Y     +G R  D       H      ++  +KT   + V  P    + L  
Sbjct: 179 -LEWELTAYMLGVGTGQRIGDVVGMEWAHYDGQFIAVVQEKTAARLWVACPTFLKRYLDG 237

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATK---AGVNKSAHGVRKFSATISADAGATA 304
            P  +   FI          + +I  +  A +     V    HG R  +A   A+AGA+ 
Sbjct: 238 LP--RRGRFIIAQSLHKGVAKRTIQQRVMAVREKIGAVGYVIHGWRYTAAVHLAEAGASD 295

Query: 305 HELMATYGWKTVDQAETYTKGADRIRL 331
            E+ A  G KT++  + Y   A++ RL
Sbjct: 296 SEIQAVTGHKTLEMVKKYRSQANQKRL 322


>gi|126734338|ref|ZP_01750085.1| putative integrase [Roseobacter sp. CCS2]
 gi|126717204|gb|EBA14068.1| putative integrase [Roseobacter sp. CCS2]
          Length = 345

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 75/306 (24%), Positives = 125/306 (40%), Gaps = 21/306 (6%)

Query: 23  YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSA 82
           YY+    G RI+  Y     F+  YM AL  S        SP+ K  ++ WLI++Y +S 
Sbjct: 23  YYYAHRGGPRIQAKYG-SPEFVTQYM-ALKQSA-------SPKVKRNSIDWLITQYLESY 73

Query: 83  HWGSLAVNSRISFESYFDQIIRKSG----DFDYRKITTKHIRSGVESRKHTPSSAIQFLT 138
            + +L+  S+  ++ Y   I +K G    D   R       R    S +    +A   L 
Sbjct: 74  DFKALSDASKREYKRYLTLISQKFGKAPIDIATRNDAIAAYRQWHRSMQDKQRTANYALA 133

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR---PWTKEDMQQFKSFWSEGSQPRLA 195
            ++ L  WAV       NP   ++  KRK +  R    WTK+ +  F +    G   +  
Sbjct: 134 VLKKLMAWAVDSGNTTTNPTAQIKPIKRKGKSTRRDIIWTKDQINHFNTV--AGCHVKNP 191

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF 255
           F   L +  R  D           +   I+  KTG  + +++P+    +L       E  
Sbjct: 192 FNAALLTSQRKKDIIEMTWDAYDGDTIKIRQSKTGKDVWIKVPEELKCILDGLDRTHERV 251

Query: 256 FINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHE--LMATYG 312
           F+N+  Q      +   F+A    A VN  + H  R  + T++   GA+  E  LM+ + 
Sbjct: 252 FLNSLGQPWTLDGYDSSFRAAKIAAKVNGVTFHDTRGTAVTLAYIGGASFREISLMSGHS 311

Query: 313 WKTVDQ 318
            + V++
Sbjct: 312 EREVEE 317


>gi|323136790|ref|ZP_08071871.1| integrase family protein [Methylocystis sp. ATCC 49242]
 gi|322398107|gb|EFY00628.1| integrase family protein [Methylocystis sp. ATCC 49242]
          Length = 357

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 60/278 (21%), Positives = 115/278 (41%), Gaps = 15/278 (5%)

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI--IRKSGDFDYRKITTKHI 119
            +P++KP  L  LI +YR S  +  L+  ++  ++ +FD +  I  +    + +     I
Sbjct: 56  QTPKEKPGALGMLICDYRASPAFLDLSARTQADYQKHFDYLRPIADTPLARFDRPLVVRI 115

Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL---SVERPKRKTEGIRPWTK 176
           R    + K           ++ V+F W   + Y+A NP     ++ RPK   +  RPW+ 
Sbjct: 116 RDKAAAAKGR-RFGNYLKATLSVVFGWGRERGYLADNPASGIKAIRRPKGAPDANRPWS- 173

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
            D ++     +  +    A   ++ +GL   D+      H ++   + K  KTG  +   
Sbjct: 174 -DAERHAVLDAAPAHMLPAIALMMMTGLGPKDALALPRNHWRDGEIATKRAKTGEPVFWP 232

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQK------MNATQFSIWFKAKATKA-GVNKSAHGV 289
           +P+    +L   P         +   +        A+  ++  + +A  A G   + +G+
Sbjct: 233 VPEPLDAILRAAPRHDAVTLCASSTGRPWTLDGFRASWRTLRLRLEAQGAIGPGLTLYGL 292

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           R   A I  +AG     +    G KT++ A  Y +GAD
Sbjct: 293 RHTVAVILREAGFDERTIADALGQKTIEMARRYARGAD 330


>gi|121602777|ref|YP_989194.1| putative integrase [Bartonella bacilliformis KC583]
 gi|120614954|gb|ABM45555.1| putative integrase [Bartonella bacilliformis KC583]
          Length = 95

 Score = 66.2 bits (160), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 35/87 (40%), Positives = 49/87 (56%)

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATA 304
           LA  PIG ETF  +  ++  +    S  F     +AG+ KSAHG+RK +AT +A++GAT 
Sbjct: 8   LATGPIGDETFICSKSEKNSSKKALSTCFVKPCNQAGIKKSAHGLRKLAATRAANSGATV 67

Query: 305 HELMATYGWKTVDQAETYTKGADRIRL 331
            ++ A +GW     A  Y K ADR  L
Sbjct: 68  SQMRALFGWTEDSMASLYPKRADRKNL 94


>gi|13488397|ref|NP_109404.1| hypothetical protein mlr9537 [Mesorhizobium loti MAFF303099]
 gi|14028151|dbj|BAB54743.1| mlr9537 [Mesorhizobium loti MAFF303099]
          Length = 183

 Score = 66.2 bits (160), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 64/130 (49%), Gaps = 1/130 (0%)

Query: 213 GVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW 272
           G Q+ +    S + +KTG  + + + D    +L + P  +  F  +   +    T F  W
Sbjct: 5   GRQNFREGRISYRRRKTGGEVDLPILDELFDVLRLLPADRMLFLTHTGDRPYKPTTFGNW 64

Query: 273 FKAKATKAGVNKSA-HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           F  +   AG+   A HG+RK  AT  A+AGAT  E+MA  G +T D+A T  K  +R  L
Sbjct: 65  FHDQCIAAGLPHCASHGLRKAGATRLANAGATELEIMAYLGHRTPDEARTDVKKLNRKLL 124

Query: 332 GIKNSRRISS 341
           G     +++S
Sbjct: 125 GDTGMEKVAS 134


>gi|332186170|ref|ZP_08387916.1| phage integrase family protein [Sphingomonas sp. S17]
 gi|332013985|gb|EGI56044.1| phage integrase family protein [Sphingomonas sp. S17]
          Length = 367

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 70/305 (22%), Positives = 121/305 (39%), Gaps = 20/305 (6%)

Query: 20  KIIYYFRKGHGRRIRLPYPHESTF---IPAYMSALTGSTPKREYINSPRKKPT--TLKWL 74
           +  YY+ +G G    L    +  F    PA+M +   +      I++PR+  T  TL+ +
Sbjct: 20  RATYYYLRGSGALNPLEGDEDQPFAPGTPAFMRSYYAA------IDAPRRARTAGTLQSV 73

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVESRKHT 129
           I  Y KS  +  LA  ++  + +   +I  K G       +  KI  + +    E  K +
Sbjct: 74  IDAYEKSPQFTKLAPRTQRDYGTALLKISDKFGTHPLAVVEDPKIRIRFLEWRDEMAKSS 133

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
           P  A   L  +R++ +W   + ++  N     ++  R     + W   D++  ++  S  
Sbjct: 134 PRQADAVLGVLRIVLEWGRDRGHLIHNHATRPKKVYRADRADKLWLPADIEALRAVAS-- 191

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP 249
            + RLAFE  L +G R  D               ++  K    + + +      LL   P
Sbjct: 192 PEIRLAFELALGTGQRKGDLLALTWSSYDGQRIQLRQAKRKRFVDMPVTRSLKALLDAQP 251

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELM 308
               T    N K    +  F   ++    +AG N    H +R  + T+ A AGAT  E+ 
Sbjct: 252 RTAATILTRNGK-PWGSVNFDHRWRETVLQAGRNGLHFHDLRGTACTVLAQAGATPSEIA 310

Query: 309 ATYGW 313
           A  GW
Sbjct: 311 AMLGW 315


>gi|114766935|ref|ZP_01445855.1| Integrase [Pelagibaca bermudensis HTCC2601]
 gi|114540842|gb|EAU43904.1| Integrase [Roseovarius sp. HTCC2601]
          Length = 335

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 56/242 (23%), Positives = 100/242 (41%), Gaps = 18/242 (7%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGST--PKREYINSP 64
           LP +V  +  R    +Y+ R G  +RI    P    F   Y   + G    PKR      
Sbjct: 5   LPAYVYAKGKR--GYLYFIRSGVCQRIH-SEPGTPEFAADYAILMRGRVVAPKR------ 55

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
                 +  LI  + +S  W + A N+R  +E +   +   +G+ D  K+ T H+    +
Sbjct: 56  -----NIGKLIELFMRSPKWANYAHNTRRGYERHLTYLRDTAGNIDPAKLRTVHVYEMRD 110

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
           +    P+ A + + ++  L  + ++  ++  NP   VER K      +PW  + +  F++
Sbjct: 111 ALADKPTDANRKIDTLVALLNYGIQIGWIDRNPAHGVERLKATGRKRKPWPVDLIDAFRA 170

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
                 +  L FE LL +G R +D        +  + F +   KT   + + L D    +
Sbjct: 171 --EADGRTLLIFEMLLGTGQRINDVLALRWSDMDGDGFQLTQGKTKAELYIPLTDRLRAV 228

Query: 245 LA 246
           LA
Sbjct: 229 LA 230


>gi|119386556|ref|YP_917611.1| phage integrase family protein [Paracoccus denitrificans PD1222]
 gi|119377151|gb|ABL71915.1| phage integrase family protein [Paracoccus denitrificans PD1222]
          Length = 357

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 81/358 (22%), Positives = 147/358 (41%), Gaps = 32/358 (8%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGR---RIRLPY-PHESTFIPAYMSALTGSTPKREYINSP 64
           P +  E  R+G   Y  R   GR   RI LP  P +  F   Y +A  G      ++ S 
Sbjct: 6   PGLLIESHRNGSPRYRVRV-EGRKHVRIHLPVGPEDKDFANYYYAARAGE----RWLPSE 60

Query: 65  RKK-PTTLKWLISEY----RKSAHWGSLAVNSRISFESYFDQIIRKSG-------DFDYR 112
           RK    ++ WL +EY     +    G ++  +     S   ++   SG       DFD  
Sbjct: 61  RKAVKGSIDWLCAEYLSFVARMVEAGQMSPATLKQRRSVLRRLCDYSGGGSVRYGDFDMD 120

Query: 113 KITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK-RKTEGI 171
                 I        H P +A   + ++R ++ WA  +EY+  NP   ++        G 
Sbjct: 121 APAAAFIEIRDAWATH-PGAADNLIKTVRAVYTWAQEREYIRHNPAAGIKAINVNPAGGA 179

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG-VQHLQNN---IFSIKTQ 227
            PW+  ++++F+     G+   L      ++  R  D+   G  Q +  +       + +
Sbjct: 180 VPWSVAELKKFREHHPRGTTAHLWLTLHAFTACRIGDAIWLGRAQEVMRDGQLWLGWQPR 239

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK--ATKAGV-NK 284
           K G+   V +P     L+A T       ++ N+K K  A+  ++  + +   + AG+ ++
Sbjct: 240 KRGSAF-VSIPM-MPPLIAATRAADGPAYLLNEKGKPFASVEALRVRVQRWCSAAGIPDR 297

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
           S+HG+RK    + A  G T +++MA         +E YTK   R  L     + ++++
Sbjct: 298 SSHGIRKAVGELMAQNGCTQYQVMAVMAHTQAKTSEIYTKRVKRQILAADGVKALAAL 355


>gi|126461447|ref|YP_001042561.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17029]
 gi|126103111|gb|ABN75789.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17029]
          Length = 363

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/234 (22%), Positives = 105/234 (44%), Gaps = 17/234 (7%)

Query: 107 GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI-NPCLSVERPK 165
           G++D+R   +  I +  +  +H P  A   + S+  +++WA+ +  +A  NP   +++  
Sbjct: 119 GEYDFRAPRSA-IIAARDQWRHKPGEADNLVKSISAMYRWAIDEAEIATENPAAGIKKLN 177

Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG----VQHLQNNI 221
           +   G   WT +D+++F+     G+   L     +++  R  D+ + G    +       
Sbjct: 178 KGGGGAAAWTADDLKRFREAHPFGTTAHLWLTLQMFTACRIDDARKLGRSNEIDRGGTLW 237

Query: 222 FSIKTQKTGTI-ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ-----FSIWFKA 275
              +  K G+  +++ +    +K      +   T+ +    +  +  +        W  A
Sbjct: 238 LEFQPGKKGSAPVSIPMLPPLLKAARAQKVQGATYLLTAAGKPFSTAESLRNRVQKWCAA 297

Query: 276 KATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
               AG+  KS+HG+RK +A + A+AG T H++MA         +E YTKGA R
Sbjct: 298 ----AGIEGKSSHGIRKAAAELLAEAGCTQHQIMALMAHTQAKTSEIYTKGAQR 347


>gi|77462513|ref|YP_352017.1| integrase/recombinase [Rhodobacter sphaeroides 2.4.1]
 gi|77386931|gb|ABA78116.1| Possible integrase/recombinase [Rhodobacter sphaeroides 2.4.1]
          Length = 296

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/234 (22%), Positives = 106/234 (45%), Gaps = 17/234 (7%)

Query: 107 GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI-NPCLSVERPK 165
           G++D+R   +  I +  +  +H P  A   + S+  +++WA+ +  +A  NP + +++  
Sbjct: 52  GEYDFRAPRSA-IIAARDQWRHKPGEADNLVKSISAMYRWAIDEAEIATENPAVGIKKLN 110

Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG----VQHLQNNI 221
           +   G   WT +D+++F+     G+   L     +++  R  D+ + G    +       
Sbjct: 111 KGGGGAAAWTADDLKRFREAHPFGTTAHLWLTLQMFTACRIDDARKLGRSNEIDRGGTLW 170

Query: 222 FSIKTQKTGTI-ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ-----FSIWFKA 275
              +  K G+  +++ +    +K      +   T+ +    +  +  +        W  A
Sbjct: 171 LEFQPGKKGSAPVSIPMLPPLLKAARAQKVQGATYLLTAAGKPFSTAESLRNRVQKWCAA 230

Query: 276 KATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
               AG+  KS+HG+RK +A + A+AG T H++MA         +E YTKGA R
Sbjct: 231 ----AGIEGKSSHGIRKAAAELLAEAGCTQHQIMALMAHTQAKTSEIYTKGAQR 280


>gi|315122004|ref|YP_004062493.1| phage-related integrase/recombinase [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495406|gb|ADR52005.1| phage-related integrase/recombinase [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 38

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/34 (82%), Positives = 30/34 (88%)

Query: 308 MATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
           MA YGWKTV QAE YTKGADR+RLGIKNSR I+S
Sbjct: 1   MAGYGWKTVSQAEIYTKGADRVRLGIKNSRLIAS 34


>gi|302879928|ref|YP_003848492.1| tyrosine recombinase XerD [Gallionella capsiferriformans ES-2]
 gi|302582717|gb|ADL56728.1| tyrosine recombinase XerD [Gallionella capsiferriformans ES-2]
          Length = 305

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 57/222 (25%), Positives = 95/222 (42%), Gaps = 25/222 (11%)

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +K  PSSA + L+S++ LF++ +RQ  +AI+P L ++ PK      +  T++D++Q  + 
Sbjct: 66  QKAKPSSAGRNLSSLKRLFRYLLRQGKIAIDPTLKIDTPKLPRNLPQSLTEQDVEQLLAA 125

Query: 186 ----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI--------- 232
                S G + R  FE L  +GLR S+    G+  L  ++  ++    G           
Sbjct: 126 PDIETSLGLRDRTMFEVLYATGLRVSELVSLGIGQLDMDMGVVRVAGKGNKERLVPLGEV 185

Query: 233 ----ITVELPDGFMKLLAMTPIGK--ETFFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284
               +   L D    LLA    G+  +  F+      M    F    K  A + G++K  
Sbjct: 186 ALDWLQSYLDDSRGVLLA----GRISDDLFVTARGSGMTRQMFWYLIKKHAKQGGLDKPL 241

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           S H +R   AT   + GA    +    G   +   + YT  A
Sbjct: 242 SPHTLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVA 283


>gi|255262833|ref|ZP_05342175.1| phage integrase family protein [Thalassiobium sp. R2A62]
 gi|255105168|gb|EET47842.1| phage integrase family protein [Thalassiobium sp. R2A62]
          Length = 336

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 69/322 (21%), Positives = 127/322 (39%), Gaps = 17/322 (5%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
           LP  V ++R      +Y+ R+G   +  L       F   Y S L+G  P        + 
Sbjct: 6   LPKHVYRQRNG----LYFQRRGWKSQKFLAEFGTPEFWTEYASILSGERP------VSKI 55

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
              + K LI  Y +S+ +  L   + + ++ Y        GD +   +  K +    +S 
Sbjct: 56  TARSFKALIKSYHRSSRYTQLKPRTALDYDKYLRFFEDVMGDANPVNMKRKDVIRLRDSN 115

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
              P  A   L  +RVL +  V   +  +NP   V   K   +   PW +E + Q++   
Sbjct: 116 ADKPYFANYSLRVLRVLLEHCVDLGWREMNPARGVSEIKTVKKARSPWPQELLDQYRIAC 175

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
             G++ RLA E  + +G R  D        +Q+  F+++  KTG  + + +        A
Sbjct: 176 PLGTRERLAMELCVGTGQRIGDVIEMRWSDIQDGGFAVRQNKTGKQLWIPILPELQA--A 233

Query: 247 MTPIGKETFFINNDKQKMNATQF-SIWFKAKATKAGVNK---SAHGVRKFSATISADAGA 302
           +    + + FI  +++  N   +  +    K  +  +N      H  R  +A    +AG 
Sbjct: 234 LDAASRHSVFILTNERGTNRWSYRGVAQAVKKVRDQINALDFDIHSWRYNAACELVEAGC 293

Query: 303 TAHELMATYGWKTVDQAETYTK 324
              +L+A    ++    + YTK
Sbjct: 294 -GDDLVAAVTGQSAAMVQHYTK 314


>gi|222149050|ref|YP_002550007.1| phage-related integrase [Agrobacterium vitis S4]
 gi|221736035|gb|ACM36998.1| phage-related integrase [Agrobacterium vitis S4]
          Length = 311

 Score = 59.3 bits (142), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 57/231 (24%), Positives = 97/231 (41%), Gaps = 12/231 (5%)

Query: 61  INSPRKKP---TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK 117
           +   R+KP   +T+  LI EYR++A + +L+ ++R  +E  F  I  + GD     +  +
Sbjct: 17  LTRDRQKPAIASTIGSLIDEYRQTARYKALSPSTRRDYERIFGAIRLEYGDCPLAAVEAR 76

Query: 118 HIRSGV----ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
             R G     +  K +P SA   +  +  LF WA   EY+  NP   +ER +R  EG R 
Sbjct: 77  GSRRGFLSWRDKMKDSPRSADMHIALLSRLFVWAKDSEYIMRNP---LERVERLHEGSRK 133

Query: 174 WTKEDMQQFKSFWSEGS-QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT- 231
                  Q     +E S   R   +  L++  R +D              SIK  KTG  
Sbjct: 134 DIIWSSNQIDKLLAEASPHIRDVAKVALWTMQRQADILTMPTLAFDGERLSIKQGKTGAR 193

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
           +  +  PD    L       ++   +N+  Q   ++ F   ++ +  + G+
Sbjct: 194 VRVIAAPDLMPMLRKAKEAQRQRVLVNSFGQNWTSSGFRASWRKEMARLGI 244


>gi|99081533|ref|YP_613687.1| phage integrase [Ruegeria sp. TM1040]
 gi|99037813|gb|ABF64425.1| hypothetical protein TM1040_1692 [Ruegeria sp. TM1040]
          Length = 348

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 56/248 (22%), Positives = 103/248 (41%), Gaps = 12/248 (4%)

Query: 70  TLKWLISEYRKSAHWGS-LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128
           T + LI+ +R+     S LA  ++ S+    + I+ K+ D D R+ T + IR+       
Sbjct: 77  TWRQLITAWREDPRVQSRLADGTKRSYSRTMEAILDKNSDKDVRRTTRQAIRTAHSKMSE 136

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEY--VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
           TP  A ++L ++ +L+ +   +    +  NP   +E   +++E   PW +  + + K   
Sbjct: 137 TPRKADKYLQTVSLLWNYGAEKLDWPLGPNPAKGIEHFGKQSE-YEPWPEWMVDKLKD-- 193

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
                 R A E +L +G R + +      H      S+  +K+   I V  P    + ++
Sbjct: 194 -APEHVRTAAELILGTGQRPNAAIHMKFAHFDGEWMSVLDEKSDERIDVYCPPALREFIS 252

Query: 247 MTPIGKETFFINNDKQKMN----ATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGA 302
             P         N  +       ++ F  W  A   +A      HG+RK S    A+AG 
Sbjct: 253 RAPRNGAYVLAKNLTEPRGYWSISSSFRTWRDALGPEAK-KYVLHGLRKLSIIRLAEAGC 311

Query: 303 TAHELMAT 310
           +  E+ A 
Sbjct: 312 SDAEIQAV 319


>gi|148549356|ref|YP_001269458.1| phage integrase family protein [Pseudomonas putida F1]
 gi|148513414|gb|ABQ80274.1| phage integrase family protein [Pseudomonas putida F1]
          Length = 326

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/229 (23%), Positives = 97/229 (42%), Gaps = 12/229 (5%)

Query: 87  LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKW 146
           LA N+   +E+  +++ +   +F+ R++  +H+ +       TP+ A + ++ +R++F +
Sbjct: 70  LAENTIKQYEAAAEKLKKYLAEFEPRQVLPRHVAALKLHMSDTPNMANRVISFLRMVFNY 129

Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ-PRLAFEFLLYSGLR 205
           A+ Q+ V  NPC  +   KR TE  R     D ++F +     S   R   E    +G R
Sbjct: 130 ALEQQIVDSNPCTGI---KRHTEKKRDRYITD-EEFAAICDAASPYIRSILEMCYLTGQR 185

Query: 206 CSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI------GKETFFINN 259
             D     +  +     +   QKTG  + V +     +L+A T        G   F    
Sbjct: 186 IGDVLAIKLSDISEKGIAFDQQKTGAKLIVGMTPDLEQLIARTKAIPRKVRGLTLFCTRG 245

Query: 260 DKQKMNATQFSIWFKAKATKAGVNKSA-HGVRKFSATISADAGATAHEL 307
             + ++       FK    KA V  +  H +R  S T + D G  A +L
Sbjct: 246 GGKPVSYETVKDAFKKACEKAKVTGATIHDLRAKSLTDTDDQGNDAQKL 294


>gi|296447647|ref|ZP_06889566.1| integrase family protein [Methylosinus trichosporium OB3b]
 gi|296254853|gb|EFH01961.1| integrase family protein [Methylosinus trichosporium OB3b]
          Length = 227

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/198 (22%), Positives = 83/198 (41%), Gaps = 12/198 (6%)

Query: 140 MRVLFKWAVRQEYVAINPCLSVE---RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196
           + ++F W   + Y+A NP   ++   RP+   E  RPWT  D ++     +  +  R A 
Sbjct: 5   LSIIFGWGAERGYLADNPATGIKDIRRPRGAAEPNRPWT--DSERHAVLDAAPAHMRPAI 62

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFF 256
             ++ +GL   D+      + ++   + +  KTG  +   +P     +L   P       
Sbjct: 63  ALMMMTGLGPKDALTLPRNYWRDGEIATRRAKTGEPVFWPVPSPLDDVLKAAPRHDALTL 122

Query: 257 INNDKQK------MNATQFSIWFKAKATKA-GVNKSAHGVRKFSATISADAGATAHELMA 309
             N   +        A+  ++  K +   A G+  + +G+R   A I  +AG     +  
Sbjct: 123 CANSAGRPWTLDGFRASWRTLRIKLEEKDAIGLGLTLYGLRHTVAVILREAGHDERTIAD 182

Query: 310 TYGWKTVDQAETYTKGAD 327
             G +T++ A  Y+KGAD
Sbjct: 183 ALGQRTIEMARHYSKGAD 200


>gi|307317617|ref|ZP_07597056.1| integrase family protein [Sinorhizobium meliloti AK83]
 gi|306896775|gb|EFN27522.1| integrase family protein [Sinorhizobium meliloti AK83]
          Length = 400

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 65/283 (22%), Positives = 111/283 (39%), Gaps = 38/283 (13%)

Query: 80  KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-KHTPSSAIQFLT 138
           K   WG + VN                 D D   +    +R  V+S+ K TPS       
Sbjct: 117 KEGTWGDVPVN-----------------DMDDDDLEKIKLRLSVDSKGKPTPSKPWHVKV 159

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTE-----GIRPWTKEDMQQFKSFWSEGSQPR 193
            ++ +F +A ++++   +P   V+  +   +     G +PW  E  QQF++    GS  R
Sbjct: 160 VLKKIFFYARKRKWRQDDPTDLVKWKRGGAKNGGYVGWKPWPWELRQQFEARHPIGSAAR 219

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQ------------NNIFSIKTQKTGTIITVE-LPDG 240
             +   L+ G R  D  R     L+            + I + K Q    +  +  L   
Sbjct: 220 TCYALALFIGNRRGDVARLRWTDLKLVPFEDEWIYVFDYIQNKKVQNDDDMRQIRPLSRM 279

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISA 298
             + L   P  KE   +N      +    +        +AG+ K  + HG+RK      A
Sbjct: 280 LSEALEPLPRDKEFVLLNGYGVPFSEKSLTGMMAHWTHQAGMPKGYTLHGLRKSYGGDLA 339

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
           +AGA+  +     G  T+D+   Y KGA ++RL ++ +RR+  
Sbjct: 340 EAGASEMQQKDMLGHTTLDEVVNYAKGASKLRLTVEGTRRLEE 382


>gi|315122559|ref|YP_004063048.1| Integrase [Candidatus Liberibacter solanacearum CLso-ZC1]
 gi|313495961|gb|ADR52560.1| Integrase [Candidatus Liberibacter solanacearum CLso-ZC1]
          Length = 90

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 44/76 (57%)

Query: 153 VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRA 212
           V  +  + V+ PK K +    W  E+++Q++ F   G++ RLA E +L+ GLR SD  R 
Sbjct: 7   VKADSTVGVKSPKLKIKEFVTWMIENIEQYRRFHPIGTKARLAMEMMLFLGLRRSDVMRV 66

Query: 213 GVQHLQNNIFSIKTQK 228
           G QH+++  F  K ++
Sbjct: 67  GKQHIKDGFFRSKLKR 82


>gi|153009120|ref|YP_001370335.1| phage integrase family protein [Ochrobactrum anthropi ATCC 49188]
 gi|151561008|gb|ABS14506.1| phage integrase family protein [Ochrobactrum anthropi ATCC 49188]
          Length = 361

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 67/242 (27%), Positives = 106/242 (43%), Gaps = 31/242 (12%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKGHG-----RRIRLPY-PHESTFIPAYMSALTGSTPK 57
           ++ LP  V +  +R GK  +Y++ G G      R++LP  PH   F  A   A   S P 
Sbjct: 10  TVSLPKGVHRVVSR-GKEYFYYQTGRGTNHVGERVKLPNDPHSPEFWQAVRQAQGISGPV 68

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISF-ESYFDQ--IIRKS-GDFDYRK 113
            +          T+  LI  Y   A W  L     +S  E Y  Q  I+RK  GD     
Sbjct: 69  VD---------GTIGALIDAY--EAAWPGLPRKLAVSTTEQYRRQLRIVRKVWGDLQAEA 117

Query: 114 ITTKHIRSGVES-RKHTPSSAIQFLTSMRVLFKWAVR-QEYVAINPCLSVERPKRKTEGI 171
           +   H+++ +E     TP +A   L ++R + +WA   +E +  +P   V    ++ EG 
Sbjct: 118 LRPSHVQALMEKIGATTPGAANNLLDALRAMCRWASGPRELLGRDPTQGVAH-FQQGEGH 176

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLL--YSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229
           +PWT + +    +F  +     L   ++L  Y+G R SD  R G   +    FS+  +KT
Sbjct: 177 KPWTPDQL----AFADKNFTGMLHRAYVLARYTGQRISDVVRLGWNDIDEGGFSLPQKKT 232

Query: 230 GT 231
           G 
Sbjct: 233 GV 234


>gi|260425689|ref|ZP_05779669.1| phage integrase family protein [Citreicella sp. SE45]
 gi|260423629|gb|EEX16879.1| phage integrase family protein [Citreicella sp. SE45]
          Length = 268

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 77/157 (49%), Gaps = 2/157 (1%)

Query: 90  NSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVR 149
           ++R + E  F  +   +G  D  K+ T H+    ++    P+ A + + ++ VL K+AV+
Sbjct: 9   HTRRNHERNFRYLRETAGKIDPAKLRTVHVYEMRDALADKPTDANRKIDTLLVLMKYAVQ 68

Query: 150 QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDS 209
             ++  NP   ++R     +  +PW  + ++ F++  +EG +  L FE LL +G R  D 
Sbjct: 69  IGWIDRNPAQDIQRLSPTGKKRKPWPADLIEAFRAE-AEG-RALLLFEMLLGTGQRIDDV 126

Query: 210 CRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
            +     L ++ F++   KT   + + L D    +LA
Sbjct: 127 LKLRWSDLDDDGFTLVQGKTKAELYIPLTDRLRAVLA 163


>gi|149204078|ref|ZP_01881046.1| putative integrase [Roseovarius sp. TM1035]
 gi|149142520|gb|EDM30565.1| putative integrase [Roseovarius sp. TM1035]
          Length = 346

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 71/303 (23%), Positives = 122/303 (40%), Gaps = 27/303 (8%)

Query: 20  KIIYYFRKGHGRRIRLP-YPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEY 78
           ++ YY  KG  R   LP  P +  F+ AY +A+     ++E          TL+ +++ Y
Sbjct: 21  RVYYYAWKGGPR---LPGKPGDPEFVDAYHTAVQTRRSQQE---------GTLQAILNAY 68

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES-----RKHTPSSA 133
           ++S  +  LA  ++  +  +  +I  +  DF    +  +  R    S      K +   A
Sbjct: 69  QESQRFLDLAPRTQRDYARHIRKIEGEYHDFPLSALLERAARGEFLSWRDRMAKTSRRQA 128

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR--KTEGIRP-WTKEDMQQFKSFWSEGS 190
               + + ++  WA  +  V  NPC   ERP +  ++E I   WT ED   F       S
Sbjct: 129 DYTYSVLALIIAWAYDRGLVPSNPC---ERPGKVYRSERIDSVWTSEDEAAFLKV--APS 183

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250
              LAF   L++G R  D  R            ++ +KTG  + + +      +L  T  
Sbjct: 184 HIGLAFMLALWTGQRQGDLLRLSWSAYDGERIRLRQRKTGARVEIPVGKPLRAMLDQTSR 243

Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMA 309
              T    + K     + F   +     +AGV + + H +R  + T  A AG +  E+ A
Sbjct: 244 SAVTILATSRKTSWTESGFRASWGKACKRAGVEDVTFHDLRGTAVTRLAVAGCSVPEIAA 303

Query: 310 TYG 312
             G
Sbjct: 304 ITG 306


>gi|206896382|ref|YP_002246413.1| tyrosine recombinase XerD [Coprothermobacter proteolyticus DSM
           5265]
 gi|206738999|gb|ACI18077.1| tyrosine recombinase XerD [Coprothermobacter proteolyticus DSM
           5265]
          Length = 288

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 81/167 (48%), Gaps = 24/167 (14%)

Query: 59  EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-FDYRKITTK 117
           EY+    K P T+K  IS+               + F+ +F++    +G+ F   KIT  
Sbjct: 7   EYLVKKGKSPHTIKNYISDL--------------MQFQKWFEE---STGEQFSPGKITEI 49

Query: 118 HIRS----GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
            +RS     +  R+  PSS  + L ++R    W V+Q+ ++ NP   VE P   T   R 
Sbjct: 50  DVRSYRSYLINIRQLKPSSIKRKLEAIRKFLDWTVKQDIISKNPAKEVEAPASVTLPPRS 109

Query: 174 WT-KEDMQQFKSFWSEGSQPRLA-FEFLLYSGLRCSDSCRAGVQHLQ 218
            + KE ++  +SF+ EG++  +A FE L  +G+R S+ C   +  +Q
Sbjct: 110 LSEKEFLRLRRSFYKEGNERDIAIFEVLANTGIRVSELCSLKLSDVQ 156


>gi|220922617|ref|YP_002497919.1| integrase family protein [Methylobacterium nodulans ORS 2060]
 gi|219947224|gb|ACL57616.1| integrase family protein [Methylobacterium nodulans ORS 2060]
          Length = 421

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 72/356 (20%), Positives = 134/356 (37%), Gaps = 35/356 (9%)

Query: 11  VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
           +  +RT  G    +    H RR  LP P     + A+  AL  +  + +  ++  +K  T
Sbjct: 56  LDAQRTDAGWTWAWVAPSH-RRHPLPDPRAEGGMEAFWRALDTAAEREKLGDAEDRK--T 112

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
              LI+ YR+ A +  L+  ++  +E +   I    GD     +TT   +  ++S + TP
Sbjct: 113 FAALIALYREHAIYTKLSALTQRDYERHLRLIAEFWGDDPVADLTTVDAQKAIDSFQATP 172

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           + A  F   +  L  + + + +   N   + E+   + +   PW     + F      G 
Sbjct: 173 AVARYFRAVLSRLIAFGIPRGFATANVVEATEKVAHEVDPHEPWPDWAFETFFEHARVGL 232

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250
              L     LY+G R  D        +  N   +  +KTG  + V +   + ++L  T +
Sbjct: 233 H--LPVYSALYTGQRSIDVIPMHRPAVGANAIEMIARKTGAAVYVPIHSEYREILTRTHV 290

Query: 251 GKETFFINNDKQKMNATQF---------SIWFKAKATKAGVNKSA------------HGV 289
                 +  D        +         SI  K + T A   K A            HG+
Sbjct: 291 DHPALHLREDGTPWTLGAYRTAWQRDFTSINAKGQPTTASPAKKAAMQRLREGGFVFHGL 350

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAET----YTKGADRIRLGIKNSRRISS 341
           RK +  +  + G T  E+ A      V+ +E     Y +  ++ RL +   +++  
Sbjct: 351 RKNAVNMLLETGCTEAEVSA-----IVEMSEQMVRHYARDVNKRRLAVNAMKKLEE 401


>gi|77465633|ref|YP_355136.1| putative integrase [Rhodobacter sphaeroides 2.4.1]
 gi|77390051|gb|ABA81235.1| putative integrase [Rhodobacter sphaeroides 2.4.1]
          Length = 373

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 68/287 (23%), Positives = 114/287 (39%), Gaps = 24/287 (8%)

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121
           + P     TL+ LI+ Y+K+  +  LA  +R  +  +  QI    GD   + +    +R 
Sbjct: 63  DRPVHHDGTLQALITAYQKTPAFTDLAEATRKGYIRHIRQIEADFGDMPVQALADPRVRG 122

Query: 122 GV------ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP-- 173
                    ++K   S+   F    R+L  WA  +  + +NPC   E+P R   G R   
Sbjct: 123 EFLDWRDRLAQKSKRSADYAFSVLARIL-SWAHDRRKIPVNPC---EKPGRLYTGSRADS 178

Query: 174 -WTKEDMQQFKSFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
            WT+    Q  +F +   +P RL F   +++G R +D  +            ++  KTG 
Sbjct: 179 IWTEA---QIAAFLAVAPRPVRLPFLLAIWTGQRQADILQLTWTAYDGQAIRLRQSKTGR 235

Query: 232 IITVELPDGFMKLLAMTPIGKETFFI--NNDKQKMNATQFSIWFKAKATKAGVNK-SAHG 288
            + + +     + +      + T  I   +  Q   +  F   F      AG+   + H 
Sbjct: 236 HMLIPVAQPLREAMEEAKARRRTLTICETSRGQPWTSDGFKTSFGKAQASAGIEGVTFHD 295

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK---GADRIRLG 332
           +R  + T  A AG +  E+ A  G    D     +K   G DR RLG
Sbjct: 296 LRGTAVTFLALAGCSVPEIAALTGHSLKDAEGILSKHYLGRDR-RLG 341


>gi|119385147|ref|YP_916203.1| phage integrase family protein [Paracoccus denitrificans PD1222]
 gi|119374914|gb|ABL70507.1| phage integrase family protein [Paracoccus denitrificans PD1222]
          Length = 307

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 64/286 (22%), Positives = 108/286 (37%), Gaps = 17/286 (5%)

Query: 48  MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG 107
           MSA      +R     P       K L   Y +S  +  L   ++  ++ Y + II   G
Sbjct: 1   MSAFWDHYNRRLKGREPLPTKRNFKTLRLSYVESDAFKHLKPRTKRDYQKYMEHIISIWG 60

Query: 108 DFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWA-----VRQEYVAINPCLSVE 162
           D D RKI T HI    ++       A   +    VL   A     +++E+   NP   + 
Sbjct: 61  DLDPRKIETHHIYKLHQANADHWRQANYLVQVFVVLLNHARLIGFLKKEHG--NPAKGIP 118

Query: 163 RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222
             K+  +G  PW  E   +F+       +PRL +E  +  G R  D+ +    H+++  +
Sbjct: 119 LFKQPGDGWEPWPDEVRAEFEELAP--PRPRLVYELSIGLGQRIGDTHKIRWDHIKDGEY 176

Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
                KT   + V L +     L+   + KE   I   +    A   ++  + +  KA +
Sbjct: 177 DFTQGKTDKPLLVPLTNRLAAYLST--VKKEGLTIVCGRDGRPADYRTVTEEMRKIKAAM 234

Query: 283 NKS------AHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
                     HG+RK +      AG     + A  G   V+  + Y
Sbjct: 235 KHPETQRYVTHGLRKNATIELYQAGCDDEMVKAVTGHSGVEMLKKY 280


>gi|325292872|ref|YP_004278736.1| integrase family protein [Agrobacterium sp. H13-3]
 gi|325060725|gb|ADY64416.1| integrase family protein [Agrobacterium sp. H13-3]
          Length = 346

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 59/251 (23%), Positives = 103/251 (41%), Gaps = 11/251 (4%)

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV---- 123
           PT L  LI+ YR S+ +    + +R  ++ Y D+I  +       ++     R       
Sbjct: 65  PTDLSSLITLYRGSSDFRRTKLGTRHEYDRYLDKIRMQFDRLSLEELQQPSTRGAFKEWR 124

Query: 124 ESRKHTPSSA-IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           +S   TP +A   ++  +RVL  +A  +  +++N      R  R T   R W+  D+  F
Sbjct: 125 DSLADTPRTADFAWMVLVRVL-SFAKDRGMISVNIAERGGRLYRSTRRDRTWSDADVAAF 183

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
           ++     SQ RLA +  L++G R  D  R                KT   + V  P G++
Sbjct: 184 EAV--APSQMRLAIQLALWTGQRKGDLLRLSWCDFDGANLRFIQSKTKARVLV--PMGYL 239

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAG 301
             +  +  G       +      +  F+  ++    KAG+ + + H +R  + T  A AG
Sbjct: 240 ADVLCSQKGTGAILRTSRGSAWTSAGFNTSWRKCCAKAGITDLTFHDLRGTAITRMALAG 299

Query: 302 ATAHELMATYG 312
            T  E+ A  G
Sbjct: 300 CTVPEIAAVTG 310


>gi|209550058|ref|YP_002281975.1| integrase family protein [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209535814|gb|ACI55749.1| integrase family protein [Rhizobium leguminosarum bv. trifolii
           WSM2304]
          Length = 345

 Score = 52.8 bits (125), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 78/324 (24%), Positives = 127/324 (39%), Gaps = 29/324 (8%)

Query: 23  YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSA 82
           YY  +G G     P  H      A+       T +RE  +    +  T+  LI E+RK+A
Sbjct: 24  YYAWRGKG----APRMHAKPGTKAFTQEYVRLTREREKAS----EDGTIGSLIDEFRKTA 75

Query: 83  HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR----SGVESRKHTPSSAIQFLT 138
            +  LA ++R  +E  F  I  K   F  + I  +  R    +  ++ + +P SA   + 
Sbjct: 76  GYMKLAASTRRDYERQFAMIRLKFEGFPIKAIEARGSRRIFLNWRDTMRDSPRSADMHIA 135

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEF 198
            +  LF WA   E +  NP   VER    T     WT +   Q     +EG  P L    
Sbjct: 136 LLSRLFSWAKGNEVILRNPLEEVERLHSGTRKDIIWTDD---QLAKLLTEGV-PHLRNVA 191

Query: 199 L--LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-ELPDGFMKLLAMTPIGKETF 255
           L  L++  R +D              SI+  KTG  + V   PD    L       ++  
Sbjct: 192 LVALWTMQRQADILSMPTLAFDGERVSIRQGKTGARVRVMAAPDILPVLKDAKTTSRQRV 251

Query: 256 FINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHE----LMAT 310
            +N+  Q   ++ F   ++ +  + G+   + H +R  + T +      AH+    L++ 
Sbjct: 252 LVNSFGQNWTSSGFRASWRKEMARLGIKGVTFHDLRGTAITFAYANLDKAHDEKIKLISE 311

Query: 311 YGWKTVDQAET-----YTKGADRI 329
               + D AE+     Y  G D I
Sbjct: 312 ISGHSQDDAESIIRKHYLAGQDVI 335


>gi|260593377|ref|ZP_05858835.1| putative integrase [Prevotella veroralis F0319]
 gi|260534653|gb|EEX17270.1| putative integrase [Prevotella veroralis F0319]
          Length = 408

 Score = 52.8 bits (125), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 56/212 (26%), Positives = 92/212 (43%), Gaps = 26/212 (12%)

Query: 143 LFKWAVRQEYVAINPC----LSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP--RLAF 196
           + K+A+  + +  NPC    + V+    K + +   + +++QQ  +   E   P  R AF
Sbjct: 198 VIKYAIEHDVITKNPCNGIVIKVDDQILKKDVL---SLDEIQQLIATHDERQNPEIRRAF 254

Query: 197 EFLLYSGLR-CS--DSCRAGVQHLQNNIFSIKTQKT-----GTIITVELPDGFMKLLAM- 247
            F LYSGLR C   D   A V +  N +   +  KT      + + + L DG ++L+   
Sbjct: 255 IFCLYSGLRYCDVKDLTFANVDY-SNKLLKFEQSKTKGHSSSSGVIIPLNDGLLRLIGEP 313

Query: 248 TPIG-KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATA 304
           TP   K+++  N    +M       W K+    AG+NK  S H  R   A    + GA  
Sbjct: 314 TPAQTKDSYIFNLPSYEMCLKSLQRWVKS----AGINKHISWHCARHSFAVNILNNGANI 369

Query: 305 HELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
             + +  G   +   E YT+  D ++    NS
Sbjct: 370 KTVASLLGHSGLKHTEKYTRAIDSLKQEAINS 401


>gi|163736786|ref|ZP_02144204.1| hypothetical protein RGBS107_01548 [Phaeobacter gallaeciensis
           BS107]
 gi|161389390|gb|EDQ13741.1| hypothetical protein RGBS107_01548 [Phaeobacter gallaeciensis
           BS107]
          Length = 157

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 58/126 (46%), Gaps = 8/126 (6%)

Query: 213 GVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA----MTPIGKETFFINNDKQKMNATQ 268
           G  +++ ++   +  KTG     ELP  +M  L       P     F  +++ +      
Sbjct: 2   GRHNIKGDVIYYRRGKTGQ--DTELPLAYMPNLVAEIVQLPPDASVFLTHSNGKTYTVES 59

Query: 269 FSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           F  WF+ +   AG+  N  AHG+RK  AT  A+AGA   ++MA    K+  +A  Y + A
Sbjct: 60  FGNWFRDQCVAAGLPDNCRAHGLRKHGATELAEAGANEFQIMAFLAHKSTHEALRYVRAA 119

Query: 327 DRIRLG 332
            R +L 
Sbjct: 120 QRKKLA 125


>gi|254418822|ref|ZP_05032546.1| site-specific recombinase, phage integrase family protein
           [Brevundimonas sp. BAL3]
 gi|196184999|gb|EDX79975.1| site-specific recombinase, phage integrase family protein
           [Brevundimonas sp. BAL3]
          Length = 362

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 75/354 (21%), Positives = 146/354 (41%), Gaps = 30/354 (8%)

Query: 1   MTPS-LRLP-PFVTKERTRHGKI-IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPK 57
           MTP+ ++LP     K R    ++ IY++R+  G  + + +  + T   A  + + G    
Sbjct: 1   MTPAAIKLPGAHRVKMRLAGDRVGIYWYRR-RGGPLLMKFTGD-TLGDALRAEIAGQQDL 58

Query: 58  REYINSPRKKP----TTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYR 112
            +   +P  +P     T++ +++ ++ +   + SL  ++R  +    D+++ + GD   R
Sbjct: 59  IDAYATPTARPEPSVITVREIVTRFKAAPDGYLSLRDSTRKVWAPMLDRVVDEFGDLPAR 118

Query: 113 KITTKHIRSGV----ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE---RPK 165
            +  K +R  +    +    TP SA   +  ++ +  + V +E    NP L V    +  
Sbjct: 119 ALNAKGMRRAIIDWRDRYAATPRSADYGVQVLKRVLNFGVDRELCETNPALGVGTIYKNN 178

Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225
           R  + I P   E++    +  S  +  RLA      +G+R  D        + +      
Sbjct: 179 RADQIIEP---EELTAILANLSPAA--RLAVRLSAATGMRRGDLVDLRWSEVSDVSIERA 233

Query: 226 TQKTGTIITVELP------DGFMKLLAMTPIGK--ETFFINNDKQKMNATQFSIWFKAKA 277
             K+   + + +P      D   +L  +    K   TF + + K   +    +  F   A
Sbjct: 234 AGKSTNGVRIMVPLIREARDVLTELRQIRDSAKVTSTFVLTSRKGPWHGDGLTSLFVRAA 293

Query: 278 TKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            KAGV KS H +R  +AT    AG    E+   +GW+     +   +  DR R+
Sbjct: 294 AKAGVKKSLHDLRGTAATRFVIAGLKDEEIADIFGWEPDRVRKIRVRYVDRARV 347


>gi|302338068|ref|YP_003803274.1| tyrosine recombinase XerD [Spirochaeta smaragdinae DSM 11293]
 gi|301635253|gb|ADK80680.1| tyrosine recombinase XerD [Spirochaeta smaragdinae DSM 11293]
          Length = 311

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 117/290 (40%), Gaps = 42/290 (14%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG-------------DFDYRKITT 116
           T K L+ +Y   AH G++   + +S ESY   I R  G             D D     T
Sbjct: 2   TGKTLLRDY--DAHLGAVLSLAPLSRESYVSAISRLLGWLEEEGKNPFSASDADLVDYLT 59

Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
                G  S KHT +   + ++ MR  F + V +EY   NP   V+ PK         + 
Sbjct: 60  LRFEEG--SDKHTIA---KLVSIMRSFFDFLVSEEYRQDNPARMVDAPKLGRSLPSVLSI 114

Query: 177 EDMQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSC--RAGVQHLQNNIFSIKTQKTG 230
           E+++ F +       EG + R  FE +  +GLR S++    AG  +L++ I  + T K  
Sbjct: 115 EEVEAFLNAIPLETPEGLRDRALFELIYSAGLRVSEAVGLSAGSLYLRDGIIRV-TGKGS 173

Query: 231 TIITVELPDGFMK-----------LLAMTPIGKETFFINNDKQKMNATQFSIW--FKAKA 277
               + L D   K           LLA +    +  F++  ++    ++ ++W  FK  +
Sbjct: 174 KQRVIPLGDEARKWIGRYLTDARPLLAKSFHPTDALFLS--RRGTPLSRKNVWKRFKQFS 231

Query: 278 TKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
             AGV+   H +R   AT     GA    +    G   +   + YT   D
Sbjct: 232 LLAGVDGKVHTLRHSFATHLLAGGADLRSVQELLGHSDISTTQIYTHIDD 281


>gi|315038190|ref|YP_004031758.1| tyrosine recombinase XerD [Lactobacillus amylovorus GRL 1112]
 gi|312276323|gb|ADQ58963.1| tyrosine recombinase XerD [Lactobacillus amylovorus GRL 1112]
          Length = 301

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/214 (22%), Positives = 89/214 (41%), Gaps = 23/214 (10%)

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFW 186
           SS  + ++SMR  ++W  RQ    +NP L ++ PK++       ++E+    ++Q     
Sbjct: 72  SSISRLISSMRKFYQWLARQNIQKLNPMLEIDLPKKERRLPTALSREEVNRLLEQPDVEQ 131

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI--------ITVELP 238
             G + R   E L  +G+R S+     +Q +  ++  I+    G+         + +   
Sbjct: 132 KLGLRDRAILETLYATGMRVSELINLELQDIHEDLGLIRVLGKGSKERLIPISPVALHWI 191

Query: 239 DGFMK-----LLAMTPIGKETFFINNDKQKMNATQFSIW--FKAKATKAGVNKSA--HGV 289
           D + K     L+  +    E  F+NN   K+  T+ +IW   K     AG+ K    H +
Sbjct: 192 DKYQKQVRDPLILKSGKNDEHLFLNNRGGKL--TRQAIWQMIKKYCQMAGITKDVTPHTL 249

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           R   AT   + GA    +    G   +   + YT
Sbjct: 250 RHTFATHLLENGADLRVVQEILGHSDISTTQIYT 283


>gi|327183467|gb|AEA31914.1| tyrosine recombinase xerD [Lactobacillus amylovorus GRL 1118]
          Length = 301

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/214 (22%), Positives = 89/214 (41%), Gaps = 23/214 (10%)

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFW 186
           SS  + ++SMR  ++W  RQ    +NP L ++ PK++       ++E+    ++Q     
Sbjct: 72  SSISRLISSMRKFYQWLARQNIQKLNPMLEIDLPKKERRLPTALSREEVNRLLEQPDVEQ 131

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI--------ITVELP 238
             G + R   E L  +G+R S+     +Q +  ++  I+    G+         + +   
Sbjct: 132 KLGLRDRAILETLYATGMRVSELINLELQDIHEDLGLIRVLGKGSKERLIPISPVALHWI 191

Query: 239 DGFMK-----LLAMTPIGKETFFINNDKQKMNATQFSIW--FKAKATKAGVNKSA--HGV 289
           D + K     L+  +    E  F+NN   K+  T+ +IW   K     AG+ K    H +
Sbjct: 192 DKYQKQVRDPLILKSGKNDEHLFLNNRGGKL--TRQAIWQMIKKYCQMAGITKDVTPHTL 249

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           R   AT   + GA    +    G   +   + YT
Sbjct: 250 RHTFATHLLENGADLRVVQEILGHSDISTTQIYT 283


>gi|169350488|ref|ZP_02867426.1| hypothetical protein CLOSPI_01256 [Clostridium spiroforme DSM 1552]
 gi|169292808|gb|EDS74941.1| hypothetical protein CLOSPI_01256 [Clostridium spiroforme DSM 1552]
          Length = 302

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 64/277 (23%), Positives = 115/277 (41%), Gaps = 25/277 (9%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQ--IIRKSGDFDYRKITTKHIRSGVE--SRK 127
           ++LI E   S +  +  +     FESY D    I K  D     I  +H+R  ++  S+K
Sbjct: 12  QYLIVEKGLSKNTINAYIKDLNQFESYLDHNFQITKIND-----IAKEHVRLYIKELSKK 66

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            + +S  + L S+R+ F +A ++  +  N     + PK   +     +KE+MQ+      
Sbjct: 67  ISATSINRKLVSLRMFFTFATKETVIDTNIMSDFDLPKIDKKLPIVLSKEEMQELLDSIE 126

Query: 188 EG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---IITV----- 235
                 S+ R  FE +  +GLR S+     +  L  N+  +K    G    I+ +     
Sbjct: 127 INDHISSRNRCMFELMYATGLRVSELTNLTISSLNINMGYLKIIGKGDKERIVPLSNMAR 186

Query: 236 ELPDGFMKLLAMTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRK 291
            + + ++K      I K++   F NN   K++  +  I  K    +  +NK  S H +R 
Sbjct: 187 NILNDYLKHYRNEFIKKDSPLLFFNNHGNKLSREECYIILKQIIERTTINKKISPHTIRH 246

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
             AT   + GA    +    G   +     YT  +++
Sbjct: 247 SFATHLLENGADLRSIQELLGHSNISTTTIYTHISNQ 283


>gi|293372055|ref|ZP_06618451.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|19068096|gb|AAL29907.1| putative integrase [Bacteroides fragilis]
 gi|292632989|gb|EFF51573.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
          Length = 407

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/207 (22%), Positives = 87/207 (42%), Gaps = 18/207 (8%)

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRP--WTKEDMQQFKSFWSEGSQP--RLAFEF 198
           + ++A+  + +  +PC SV   K  ++ +R    + E++Q+  +   +   P  R AF F
Sbjct: 200 VIRYAIDHDVMLKDPCKSVT-CKVDSQMLRKDVLSPEEIQKLAACHYDNENPNVRRAFIF 258

Query: 199 LLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKT-----GTIITVELPDGFMKLLAMTPIG 251
            LY GLR  D      +++   N +   +  KT      + + + L DG + ++   P+ 
Sbjct: 259 CLYCGLRFCDVKDLTYKNVDYANRLLKFEQSKTKGHSASSGVVIPLNDGLLSIIGEAPVD 318

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMA 309
           K     N    +        W K    +AG++K  S H  R   A    + GA    + +
Sbjct: 319 KNCLIFNLPTYESCCKSVKRWVK----RAGIDKHISWHCARHSFAVNILNNGANIKTVAS 374

Query: 310 TYGWKTVDQAETYTKGADRIRLGIKNS 336
             G   +   E YT+  D+++    NS
Sbjct: 375 LLGHSGLKHTEKYTRAVDKLKEEAINS 401


>gi|99078559|ref|YP_611817.1| phage integrase [Ruegeria sp. TM1040]
 gi|99035697|gb|ABF62555.1| phage integrase [Ruegeria sp. TM1040]
          Length = 197

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 64/143 (44%), Gaps = 2/143 (1%)

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE 253
           L FE  L +G R SD  R    H++     +   KT     +        +LA     K 
Sbjct: 43  LIFELALGTGQRASDLTRMEWGHIEVGRIWVTQGKTNVRFWIPFTKRLSSVLAGVDTSKS 102

Query: 254 TFFINNDK-QKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATY 311
            F + ++   ++N  Q           AG+ + S HG+R  +A   A+AG T H++ A  
Sbjct: 103 RFILTDESGHQLNYDQLQKQVIRVRRAAGLMDYSLHGLRDSAAGELAEAGCTDHQIAAIT 162

Query: 312 GWKTVDQAETYTKGADRIRLGIK 334
           G K++   + Y+KGA + RL I+
Sbjct: 163 GHKSLSMVQKYSKGASQKRLAIE 185


>gi|330807709|ref|YP_004352171.1| Site-specific tyrosine recombinase XerD [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327375817|gb|AEA67167.1| Site-specific tyrosine recombinase XerD [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 298

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 56/239 (23%), Positives = 104/239 (43%), Gaps = 23/239 (9%)

Query: 112 RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
           R++   H+   +E + + P S  +FL+ +R  +++ +R++ +A++P L VE P+      
Sbjct: 53  RELILDHLAWRLE-QNYKPRSTARFLSGLRGFYRYLLREKLIAVDPTLRVEMPQLGRPLP 111

Query: 172 RPWTKEDMQQFKSF--WSE--GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227
           +  ++ D++   +    SE  G + R   E L   GLR ++     ++ +      ++  
Sbjct: 112 KSLSEADVEALLAAPDLSEAIGQRDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVM 171

Query: 228 KTGT-----------IITVE--LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274
             G+           I+ VE  + D   +LL   P   +  F +   ++M    F    K
Sbjct: 172 GKGSKERLVPMGEEAIVWVERYMRDARHELLGGRP--SDVLFPSLRGEQMTRQTFWHRIK 229

Query: 275 AKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            +A  AG+NKS   H +R   AT   + GA    +    G   +   + YT  A R RL
Sbjct: 230 HQAKVAGINKSLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARL 287


>gi|118586872|ref|ZP_01544306.1| integrase/recombinase [Oenococcus oeni ATCC BAA-1163]
 gi|118432704|gb|EAV39436.1| integrase/recombinase [Oenococcus oeni ATCC BAA-1163]
          Length = 302

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/211 (22%), Positives = 88/211 (41%), Gaps = 19/211 (9%)

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----W 186
           +S +  ++S+R  F +    + + I+P L V  PK+ +   +  T  +++   +      
Sbjct: 74  NSIVHMVSSLRKFFAYLSDDQQIQIDPMLKVTTPKKNSHLPQVLTATEIEAVLAVPDIST 133

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
           + G + R   E +  +G R S+ C   +  L + +  I T   G    + +P G M LL 
Sbjct: 134 TLGLRNRALLETMYATGFRVSEICNLKLADLHDELGLITTIGKGQKQRI-VPIGEMSLLY 192

Query: 247 MTPIGKET------------FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292
           ++   KE+             F+N+   +++        K  A KAG++K  S H +R  
Sbjct: 193 ISKYFKESRPILLKDKESPYLFLNDHGHRISRQGIFKLVKEIAIKAGIDKDISPHTLRHS 252

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYT 323
            AT   + GA    +    G   +   + YT
Sbjct: 253 FATNLLENGADLRIVQELLGHSDISTTQIYT 283


>gi|189184607|ref|YP_001938392.1| putative integrase [Orientia tsutsugamushi str. Ikeda]
 gi|189181378|dbj|BAG41158.1| putative integrase [Orientia tsutsugamushi str. Ikeda]
          Length = 399

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/202 (24%), Positives = 91/202 (45%), Gaps = 10/202 (4%)

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           ++A QFL ++  +F  A++ E +  NP L +++ K +    R  + ++M +F       +
Sbjct: 175 ATANQFLITLSSIFNKAIKWELIDRNPTLKIDKHKMQARE-RRLSYDEMSKFLHVLCGEA 233

Query: 191 QPRL-AFEFL-LYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLL- 245
            P +  F  L LY+G R ++       ++     I+ I   K G    + L D  +++L 
Sbjct: 234 TPLIRDFALLALYTGARKTNVLEMEWDNIDFARKIWHIPKTKNGKAQNIPLTDEIIEILQ 293

Query: 246 AMTPIGKETFFINNDKQKMNATQFSI--WFKAKATKAGV-NKSAHGVRKFSATISADAGA 302
           A     K  + ++ DK K    ++    W+K    KAG+ N   H +R+  A+  AD GA
Sbjct: 294 ARKLTSKSKWVLSTDKSKSGHLEYPYRGWYKI-CKKAGIKNLRIHDLRRTFASCMADEGA 352

Query: 303 TAHELMATYGWKTVDQAETYTK 324
             + + A      +     YTK
Sbjct: 353 GQYIISAALNHSDIKSTSIYTK 374


>gi|326387303|ref|ZP_08208913.1| hypothetical protein Y88_1353 [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326208484|gb|EGD59291.1| hypothetical protein Y88_1353 [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 303

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 65/299 (21%), Positives = 117/299 (39%), Gaps = 18/299 (6%)

Query: 57  KREYINSPRKKP-TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT 115
           K E   SP K    TL  ++  YR+S  +  LA +++  +  + D+I  K G        
Sbjct: 9   KAEKARSPTKGALATLDDVLDRYRQSPEFSKLAESTKRDYRLWLDRISEKFGQAPIAAFE 68

Query: 116 TKHIRSGVESRKHT----PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
            + +R+ +   ++T    P +A +   +M  +  WA  +  + +N    + +     +  
Sbjct: 69  DQRMRTEIIDWRNTWADQPRTADKASVTMATVLGWAQGEGILPVNIATGIRQLHHVNKAD 128

Query: 172 RPWTKEDMQQFK--------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223
           + W     +  +        S +S+     L    L  +GLR  D  R   + +      
Sbjct: 129 QIWEDRHWEAMRGSKDKNGRSLYSDHLDRALRLASL--TGLRLGDLVRVAWEDVGEKAII 186

Query: 224 IKTQK-TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
           + T+K  G  I   LPD    LL     G      N+  +    +     F+ KA   G 
Sbjct: 187 LTTRKRKGRAIIPILPD-LRGLLDSIGTGAGPILRNSRGEPWTESGLGSVFQ-KAKPDGF 244

Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
           +++ H +R   AT  A  G T  E+  T GW     +E  ++  D  R+ +    R+S+
Sbjct: 245 DRTMHDLRGTYATWLAMRGLTDEEIARTIGWTAKRISEIRSRYVDEARVIVSMVERLSA 303


>gi|187940137|gb|ACD39269.1| phage integrase family protein [Pseudomonas aeruginosa]
          Length = 324

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/226 (22%), Positives = 90/226 (39%), Gaps = 9/226 (3%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWA 147
           + N+   + +  +++     +F  R++  KH+         TP+ A + LT +RV+F  A
Sbjct: 71  SANTITQYRAVAERLKDMFAEFQPREVLPKHVAQVKTHMASTPNMANRTLTVLRVVFAQA 130

Query: 148 VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCS 207
           +    V  NPC+ ++    K  G R    +++       SE    R  FE    +G R  
Sbjct: 131 LEWGEVDSNPCIGIKPHSEKKRG-RYLNDKELLSILDNCSEYM--RCIFELAYLTGQRIG 187

Query: 208 DSCRAGVQHLQNNIFSIKTQKTGTIITVEL-PD-----GFMKLLAMTPIGKETFFINNDK 261
           D     +  + ++  + + QKTG+ + + + PD        K L      K        K
Sbjct: 188 DVLSIKLDDVSDDGIAFQQQKTGSKVLISMTPDLDAVVQRAKALPRPADAKNLICNRKGK 247

Query: 262 QKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHEL 307
           Q   AT    W +A+      +   H +R  + T +   G  A +L
Sbjct: 248 QVDYATTRDAWKRAREAAGVTDARIHDLRAKALTDAKKQGKDARKL 293


>gi|189184504|ref|YP_001938289.1| putative integrase [Orientia tsutsugamushi str. Ikeda]
 gi|189184591|ref|YP_001938376.1| putative integrase [Orientia tsutsugamushi str. Ikeda]
 gi|189181275|dbj|BAG41055.1| putative integrase [Orientia tsutsugamushi str. Ikeda]
 gi|189181362|dbj|BAG41142.1| putative integrase [Orientia tsutsugamushi str. Ikeda]
          Length = 399

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/202 (24%), Positives = 91/202 (45%), Gaps = 10/202 (4%)

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           ++A QFL ++  +F  A++ E +  NP L +++ K +    R  + ++M +F       +
Sbjct: 175 ATANQFLITLSSIFNKAIKWELIDRNPTLKIDKHKMQARE-RRLSYDEMSKFLHVLCGEA 233

Query: 191 QPRL-AFEFL-LYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLL- 245
            P +  F  L LY+G R ++       ++     I+ I   K G    + L D  +++L 
Sbjct: 234 TPLIRDFALLALYTGARKTNVLEMEWDNIDFVRKIWHIPKTKNGKAQNIPLTDEIIEILQ 293

Query: 246 AMTPIGKETFFINNDKQKMNATQFSI--WFKAKATKAGV-NKSAHGVRKFSATISADAGA 302
           A     K  + ++ DK K    ++    W+K    KAG+ N   H +R+  A+  AD GA
Sbjct: 294 ARKLTSKSKWVLSTDKSKSGHLEYPYRGWYKI-CKKAGIKNLRIHDLRRTFASCMADEGA 352

Query: 303 TAHELMATYGWKTVDQAETYTK 324
             + + A      +     YTK
Sbjct: 353 GQYIISAALNHSDIKSTSIYTK 374


>gi|116491033|ref|YP_810577.1| tyrosine recombinase XerD subunit [Oenococcus oeni PSU-1]
 gi|290890513|ref|ZP_06553588.1| hypothetical protein AWRIB429_0978 [Oenococcus oeni AWRIB429]
 gi|116091758|gb|ABJ56912.1| tyrosine recombinase XerD subunit [Oenococcus oeni PSU-1]
 gi|290479909|gb|EFD88558.1| hypothetical protein AWRIB429_0978 [Oenococcus oeni AWRIB429]
          Length = 302

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/211 (22%), Positives = 88/211 (41%), Gaps = 19/211 (9%)

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----W 186
           +S +  ++S+R  F +    + + I+P L V  PK+ +   +  T  +++   +      
Sbjct: 74  NSIVHMVSSLRKFFAYLSDDQQIQIDPMLKVTTPKKNSHLPQVLTATEIEAVLAVPDIST 133

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
           + G + R   E +  +G R S+ C   +  L + +  I T   G    + +P G M LL 
Sbjct: 134 TLGLRNRALLETMYATGFRVSEICNLKLADLHDELGLITTIGKGQKQRI-VPIGEMSLLY 192

Query: 247 MTPIGKET------------FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292
           ++   KE+             F+N+   +++        K  A KAG++K  S H +R  
Sbjct: 193 ISKYFKESRPILLKDKESPYLFLNDHGHRISRQGIFKLVKEIAIKAGIDKDISPHTLRHS 252

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYT 323
            AT   + GA    +    G   +   + YT
Sbjct: 253 FATNLLENGADLRIVQELLGHSDISTTQIYT 283


>gi|302346034|ref|YP_003814387.1| phage integrase, N-terminal SAM domain protein [Prevotella
           melaninogenica ATCC 25845]
 gi|302149123|gb|ADK95385.1| phage integrase, N-terminal SAM domain protein [Prevotella
           melaninogenica ATCC 25845]
          Length = 314

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 60/276 (21%), Positives = 113/276 (40%), Gaps = 25/276 (9%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIR-----KSGDFDYRKITTKHIRSGVES 125
           K ++S YR+        +VN+  ++    D++ R     +    D +    +H  + +  
Sbjct: 8   KDIVSRYRRYLKLEKGYSVNTLDAYMRDVDKLFRYLAVEQVDVLDVKLEDLEHFAAFISD 67

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK-- 183
               P S  + L+ +R  +++ V   Y+ ++P   +E PK+        +  ++   +  
Sbjct: 68  LGIGPRSLARILSGVRQFYRFLVIDGYLEVDPTELLESPKQPDHLPEVLSTAEVDLLEQA 127

Query: 184 ---SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---IITV-- 235
              S W EG + R   E L   GLR S+     + +L      I+    G+   ++ +  
Sbjct: 128 IDLSKW-EGHRNRAIIEVLFSCGLRVSELTNLKLSNLYIEEQYIRVMGKGSKERLVPISP 186

Query: 236 ----ELPDGFM--KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287
               EL   F    ++ + P  ++  F+N   Q +  T   I  K  A +AG+ K  S H
Sbjct: 187 RALDELSYWFADRNVMKIKPGEEDYVFLNRRGQHLTRTMILIMIKRYAVEAGIKKTISPH 246

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
            +R   AT   + GA    + A  G +++   E YT
Sbjct: 247 TLRHSFATSLLEGGADLRAIQAMLGHESIGTTEIYT 282


>gi|56459934|ref|YP_155215.1| site-specific recombinase [Idiomarina loihiensis L2TR]
 gi|56178944|gb|AAV81666.1| Site-specific recombinase [Idiomarina loihiensis L2TR]
          Length = 300

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/214 (23%), Positives = 96/214 (44%), Gaps = 16/214 (7%)

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKS 184
           +P S  +FL+S +  F++AV+Q++VA++P   ++RPK         ++ED    ++Q  +
Sbjct: 72  SPRSTSRFLSSTKKFFQFAVKQQWVAVDPTARLKRPKLPQSIPHSLSEEDVISLLEQPDT 131

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---II-----TVE 236
               G + R   E L  +GLR ++  R     L      ++    G    ++      +E
Sbjct: 132 ETPIGLRDRTMLEVLYATGLRVTELIRLQYDQLSRQQGLVRVIGKGNKERLVPLGEDALE 191

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK--ATKAGV--NKSAHGVRKF 292
             D ++K        K + +I   ++    T+ + W++ K  A +AG+  + S H +R  
Sbjct: 192 WLDNYLKHGRPAITDKSSPWIFVTQRGSLLTRQAFWYRLKHYAEEAGIYAHLSPHTLRHA 251

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            AT   + GA    L    G   +   + YT+ A
Sbjct: 252 FATHLLNHGADLRVLQLLLGHSDLSTTQIYTQVA 285


>gi|220921956|ref|YP_002497257.1| integrase family protein [Methylobacterium nodulans ORS 2060]
 gi|219946562|gb|ACL56954.1| integrase family protein [Methylobacterium nodulans ORS 2060]
          Length = 353

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 83/350 (23%), Positives = 137/350 (39%), Gaps = 41/350 (11%)

Query: 21  IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRK 80
           I Y + +  G R  L  PHE    P + +AL     K +     +++P T   L+  YR 
Sbjct: 17  ITYAYDRASGER--LTPPHE-IGTPGWWTALQAIRAKAK--PKVKEEPGTWGALVISYRS 71

Query: 81  SAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKIT--TKHIRSGVES---RKHTPSSAI 134
           S  +   LA  +R  +++  D +    G    R I+  T+   +G+     +K     A 
Sbjct: 72  SPRFLNDLAPRTRADYQTVLDHL----GKLHDRPISAWTRGFVAGLRDEAQKKKGRRFAN 127

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVE---RPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
             L+ + V+F   + +E  + NP   V+   RPK      RPW+ E+     +     + 
Sbjct: 128 YVLSVVSVVFAHGIEREMASTNPVRDVKKLRRPKGAPRANRPWSPEEWDAVVA----AAS 183

Query: 192 PRLAFEFLLYS--GLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
           P L    +L    G R  ++  A     +      S  + K+G  + V+ P+   + LA 
Sbjct: 184 PELRAAIMLGGVLGYRQGEALSAKRDSWNRAAGTLSRISAKSGKPVKVQAPEIVAQALAA 243

Query: 248 TPI-GKETFFINNDKQKMNATQF-SIWFKAKATKAGVNKSA-----HGVRKFSATISADA 300
            P     T  +N+  Q      F   +F+   T     K A     HG+R  +AT     
Sbjct: 244 LPSHSATTLLVNSRGQPWKEDGFRGSFFRLIRTLEAEGKIADGLTFHGLRHTAATQMRQL 303

Query: 301 GATAHELMATYGWKTVDQAETYTKGADR--------IRLGIKNSRRISSV 342
           G     +    G +T   A  Y++ AD         +RL  +N +R  SV
Sbjct: 304 GFDTRTIADMLGQETEGMAAHYSREADLEPKLRGVVVRLDQENRKRTGSV 353


>gi|288803482|ref|ZP_06408914.1| integrase/recombinase XerD [Prevotella melaninogenica D18]
 gi|288334092|gb|EFC72535.1| integrase/recombinase XerD [Prevotella melaninogenica D18]
          Length = 314

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 50/212 (23%), Positives = 89/212 (41%), Gaps = 19/212 (8%)

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK-----S 184
           P S  + L+ +R  +++ V   Y+ ++P   +E PK+        +  ++   +     S
Sbjct: 72  PRSLARILSGVRQFYRFLVIDGYLEVDPTELLESPKQPDHLPEVLSTAEVDLLEQAIDLS 131

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---IITV------ 235
            W EG + R   E L   GLR S+     + +L      I+    G+   ++ +      
Sbjct: 132 KW-EGHRNRAIIEVLFSCGLRVSELTNLKLSNLYIEEQYIRVMGKGSKERLVPISPRALD 190

Query: 236 ELPDGFM--KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRK 291
           EL   F    ++ + P  ++  F+N   Q +  T   I  K  A +AG+ K  S H +R 
Sbjct: 191 ELNYWFADRNVMKIKPGEEDYVFLNRRGQHLTRTMILIMIKRYAVEAGIKKTISPHTLRH 250

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYT 323
             AT   + GA    + A  G +++   E YT
Sbjct: 251 SFATSLLEGGADLRAIQAMLGHESIGTTEIYT 282


>gi|54399934|gb|AAV34206.1| site-specific recombinase [Pseudomonas fluorescens]
          Length = 298

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 56/239 (23%), Positives = 104/239 (43%), Gaps = 23/239 (9%)

Query: 112 RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
           R++   H+   +E + + P S  +FL+ +R  +++ +R++ +A++P L VE P+      
Sbjct: 53  RELILDHLAWRLE-QNYKPRSTARFLSGLRGFYRYLLREKLIAVDPTLRVEMPQLGRPLP 111

Query: 172 RPWTKEDMQQFKSF--WSE--GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227
           +  ++ D++   +    SE  G + R   E L   GLR ++     ++ +      ++  
Sbjct: 112 KSLSEADVEALLAAPDLSEAIGQRDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVM 171

Query: 228 KTGT-----------IITVE--LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274
             G+           I+ VE  + D   +LL   P   +  F +   ++M    F    K
Sbjct: 172 GKGSKERLVPMGEEAIVWVERYVRDARHELLGGRP--SDALFPSLRGEQMTRQTFWHRIK 229

Query: 275 AKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            +A  AG+NKS   H +R   AT   + GA    +    G   +   + YT  A R RL
Sbjct: 230 HQAKVAGINKSLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARL 287


>gi|325278828|ref|YP_004251370.1| integrase family protein [Odoribacter splanchnicus DSM 20712]
 gi|324310637|gb|ADY31190.1| integrase family protein [Odoribacter splanchnicus DSM 20712]
          Length = 409

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 94/191 (49%), Gaps = 28/191 (14%)

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
            RK  P++  + L  +  + K+AV+  Y+  NP  + ER K  T+ I   T E+++Q ++
Sbjct: 177 DRKQIPNTVNKTLQKVIEVAKYAVKCGYLEKNPFNAYERLKVGTKSITFLTDEEIEQLEN 236

Query: 185 FWSEGSQPRLA-----FEFLLYSGL---RCSDSCRAG-VQHLQNNI-FSIKTQKTGTIIT 234
           +    +Q RL      + F +Y+GL     ++ C+A  ++ L N I  ++  QKTG  + 
Sbjct: 237 Y--HFTQHRLEQVKDLYLFSVYTGLAYREAANLCKAHLIKGLDNEIWINMTRQKTGNSME 294

Query: 235 VELPDGFMKLLAMTPIGKETF------FINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286
           + L     K+L+    G E         I+N  Q+MN+     + K  A   G+NK  + 
Sbjct: 295 IPLLPPAQKILSKYITGNEPINKPLLPMISN--QRMNS-----YLKEIAEILGINKRLTT 347

Query: 287 HGVRK-FSATI 296
           H  RK F++TI
Sbjct: 348 HTARKTFASTI 358


>gi|325956642|ref|YP_004292054.1| tyrosine recombinase xerD [Lactobacillus acidophilus 30SC]
 gi|325333207|gb|ADZ07115.1| tyrosine recombinase xerD [Lactobacillus acidophilus 30SC]
          Length = 301

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 49/214 (22%), Positives = 88/214 (41%), Gaps = 23/214 (10%)

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFW 186
           SS  + ++SMR  ++W  RQ    +NP L ++ PK++       + E+    ++Q     
Sbjct: 72  SSISRLISSMRKFYQWLARQNIQKLNPMLEIDLPKKERRLPTALSGEEVNRLLEQPDVEQ 131

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI--------ITVELP 238
             G + R   E L  +G+R S+     +Q +  ++  I+    G+         + +   
Sbjct: 132 KLGLRDRAILETLYATGMRVSELINLELQDIHEDLGLIRVLGKGSKERLIPISPVALHWI 191

Query: 239 DGFMK-----LLAMTPIGKETFFINNDKQKMNATQFSIW--FKAKATKAGVNKSA--HGV 289
           D + K     L+  +    E  F+NN   K+  T+ +IW   K     AG+ K    H +
Sbjct: 192 DKYQKQVRDPLILKSGKNDEHLFLNNRGGKL--TRQAIWQMIKKYCQMAGITKDVTPHTL 249

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           R   AT   + GA    +    G   +   + YT
Sbjct: 250 RHTFATHLLENGADLRVVQEILGHSDISTTQIYT 283


>gi|85708305|ref|ZP_01039371.1| putative integrase [Erythrobacter sp. NAP1]
 gi|85689839|gb|EAQ29842.1| putative integrase [Erythrobacter sp. NAP1]
          Length = 351

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 72/325 (22%), Positives = 121/325 (37%), Gaps = 43/325 (13%)

Query: 12  TKERTRHGKII-YYFRKGHGRRIRLPYPHESTFIPAYMSALTG--STPKREYINSPRKKP 68
            K+R   GK + YY+    G R+    P    FI +Y +AL    +TP           P
Sbjct: 11  VKKRLASGKTVTYYYAWKGGPRLE-GEPGSPKFIESYNAALATRFTTP-----------P 58

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--- 125
             L+ ++ +Y+ S  +  LA  +R  ++ +   I  + GDF    +  +  R    +   
Sbjct: 59  DQLRSILKQYQASHSFTDLADRTRQDYKKHLRTIEAEYGDFPIEALADRRTRGEFLAWRE 118

Query: 126 --RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
              K++   A      +  +  WA  + +  +NPC    R  R T   + WT ED Q+F 
Sbjct: 119 RLAKNSRRQADYAYAVLARVLSWASNRGFAPLNPCERPGRLYRSTRSTKVWTAEDEQRFY 178

Query: 184 SFWSEGSQPR---LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
                   PR   L     L++G R  D               +  QKT   + V++P G
Sbjct: 179 KH-----APRHLHLPLLMALWTGQRQGDLLALRWSAYDGQYLRLTQQKTK--VRVQIPAG 231

Query: 241 --------FMKLLAMTPIGK----ETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAH 287
                    ++     P  +        +N       A  F   ++    +AG+ + + H
Sbjct: 232 KPLKAELDALREARTKPANELAANSHILLNTRHSPWTAAGFRASWRKACKQAGIEDLTFH 291

Query: 288 GVRKFSATISADAGATAHELMATYG 312
            +R  + T  A AG T  E+    G
Sbjct: 292 DLRGTAVTRLAIAGCTIPEIATITG 316


>gi|146277418|ref|YP_001167577.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17025]
 gi|145555659|gb|ABP70272.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17025]
          Length = 336

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 60/282 (21%), Positives = 104/282 (36%), Gaps = 15/282 (5%)

Query: 61  INSPRKKPTTLKW--LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH 118
           + S +K+     W   I   R+S  W + ++  R   E   + +  K G  D  ++T   
Sbjct: 46  VMSGKKQEAKRSWGAAIEVLRQSDRWAAKSLRYRQDLEPVLEYLGEKIGKRDVARLTQAD 105

Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER---PKRKTEGIRPWT 175
           I   ++  KH    A     ++ ++ K  +R+ ++  NP   +ER   PK +     PW 
Sbjct: 106 IYEAMDRNKHRVRFANYIPVAISMIAKEVIRRRWLEDNPAKGIERLKVPKERQRPHVPWP 165

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG----- 230
              + +F++    G   RL FE  + +  R SD           +   ++  KTG     
Sbjct: 166 DAAVVKFRA--EAGDLERLIFEIGVGTVQRPSDWIGFRWGDYDGDSLVLRQGKTGKPLVL 223

Query: 231 --TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAH 287
             T+      D     L   P+         D  +M+  + +    A+  + G+     H
Sbjct: 224 PCTVALKAALDKAKAALPFAPMPSRHIITKQDGSRMDYRRLAEIMLAERARLGLEAYDLH 283

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            +R       A AG    E+MA  G  T      Y   A +I
Sbjct: 284 ALRYRGVMELAWAGCDDDEIMAYSGHSTKAMVRKYAGEARQI 325


>gi|257080952|ref|ZP_05575313.1| prophage lambdaba03 [Enterococcus faecalis E1Sol]
 gi|256988982|gb|EEU76284.1| prophage lambdaba03 [Enterococcus faecalis E1Sol]
          Length = 301

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 59/269 (21%), Positives = 109/269 (40%), Gaps = 49/269 (18%)

Query: 105 KSGDFDYRKITTKHIRSGV--ESRKHTPSSAIQFLTS-MRVLFKWAVRQEYVAINPCLSV 161
           KS + +  +I  KHI+S +     K   +S I    S ++ LF + + ++Y+  NP + +
Sbjct: 39  KSINVEPSQIEKKHIKSWIIDMQEKEMQASTINVSVSRLKKLFDYMLIEKYIEYNPFVDI 98

Query: 162 ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA------FEFLLYSGLRCSDSCRAGVQ 215
           ER K + + I P    +++Q  +   +     +A         ++  GLR S+ C    +
Sbjct: 99  ERLKEQRKVIYPLNDYEIKQMLTVAKKHPYKHIAQRNVVILMLMIECGLRISEVCEIRDE 158

Query: 216 HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE-------------------TFF 256
            + NN   I+  K          D   + +A++PI K+                   TF 
Sbjct: 159 DIMNNQIIIRKSKNN-------KD---RAVAVSPILKKEIIKYHRIKKRKYGLLEGNTFI 208

Query: 257 INNDKQKMNATQFSIWFKAKATKAGVNK------SAHGVRKFSATISADAGATAHELMAT 310
           ++N  +K+N    SIW   +  K  ++       S H +R   A++    G   + L   
Sbjct: 209 VSNLGKKLNEK--SIWQIMQEIKKQIDIRDCVRFSGHTLRHTYASMQLRNGLDIYTLSLN 266

Query: 311 YGWKTVDQAETYTK---GADRIRLGIKNS 336
            G  +++  + Y +     D I   IK S
Sbjct: 267 MGHSSIEMTQRYVQTLSSEDFIEKSIKTS 295


>gi|126739278|ref|ZP_01754972.1| Integrase [Roseobacter sp. SK209-2-6]
 gi|126719895|gb|EBA16603.1| Integrase [Roseobacter sp. SK209-2-6]
          Length = 339

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 68/161 (42%), Gaps = 7/161 (4%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           LI+  R++  W + +   R   E  F  +  K G  D  ++T   I   +E  KH    A
Sbjct: 64  LIAAMRETDKWANFSPRYRKDLEPVFTYLTEKIGKADVVRLTQADIYDAMEKNKHRVRFA 123

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVE---RPKRKTEGIRPWTKEDMQQFKSFWSEG- 189
               T++ +L K A+R+ +   NP + +E    PK + +   PWT   +++ +    EG 
Sbjct: 124 NYIPTAISMLSKLAIRKRWRKDNPAIDIEPLKVPKARKKPHVPWTDWAVERLR---DEGE 180

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
           S P L FE  + S  R  D               ++  KTG
Sbjct: 181 SLPVLIFEIGVGSVQRPGDWVDFQWGDYDGETLKLRQNKTG 221


>gi|282879077|ref|ZP_06287837.1| putative tyrosine recombinase XerD [Prevotella buccalis ATCC 35310]
 gi|281298811|gb|EFA91220.1| putative tyrosine recombinase XerD [Prevotella buccalis ATCC 35310]
          Length = 321

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 49/232 (21%), Positives = 92/232 (39%), Gaps = 17/232 (7%)

Query: 109 FDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168
            D R    +H    +      P+S  + L+ +R  +++ V   Y+  +P   +E P+   
Sbjct: 52  LDVRLEDLQHFAGQLHEHDIGPTSQARILSGVRSFYRFLVLDGYIEQDPTELLESPRLGE 111

Query: 169 EGIRPWTKEDMQQFKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
                 + E++   ++       EG + +   E L   GLR S+     + +L  +   I
Sbjct: 112 HLPEVLSTEEVDMIENSIDLSKPEGQRNKAIIEVLFSCGLRVSELVNLQLSNLYLDEGFI 171

Query: 225 KTQKTGT---IITV------ELPDGFM--KLLAMTPIGKETFFINNDKQKMNATQFSIWF 273
           +    G    ++ +      EL   F+   L+ + P  ++  F+N     +  T   I  
Sbjct: 172 RVTGKGNKERLVPISPKAIKELNLWFLDRNLMKIKPGEQDYVFLNRRGAHLTRTMILIML 231

Query: 274 KAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           K +A +AG+ K  S H +R   AT     GA    +    G +++   E YT
Sbjct: 232 KRQAQEAGIQKTISPHTLRHSFATELLKGGADLRAIQVMLGHESIGTTEIYT 283


>gi|303326777|ref|ZP_07357219.1| tyrosine recombinase XerD [Desulfovibrio sp. 3_1_syn3]
 gi|302862765|gb|EFL85697.1| tyrosine recombinase XerD [Desulfovibrio sp. 3_1_syn3]
          Length = 309

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 51/224 (22%), Positives = 85/224 (37%), Gaps = 16/224 (7%)

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           + SR +T  +  + L+++R  F +AV +  +  NP L +E PK         ++E+M++ 
Sbjct: 74  LRSRGNTGRTLARRLSALRAFFAFAVEEGTLKTNPALLLENPKLPQHLPEVLSREEMEKL 133

Query: 183 KSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT------- 231
                     G + R   E L  +GLR S+ C   V  L      ++    G        
Sbjct: 134 LVLPDMDEKSGRRDRCMLEMLYAAGLRVSELCNLSVADLDLQRGLVRVFGKGAKERLVPL 193

Query: 232 --IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287
             +I   L D       +   G    F+N   + ++        K     AG+ +  S H
Sbjct: 194 HDMIQALLGDYLRSWRPLFSPGGNQLFVNRSGRALSRQYIWKMVKKYTLLAGIRRAVSPH 253

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330
             R   AT   + GA    +    G   +   E YT   A+R+R
Sbjct: 254 TFRHSFATHLLEGGADLRAVQLLLGHADISATEIYTHVQAERLR 297


>gi|262038503|ref|ZP_06011872.1| putative integrase [Leptotrichia goodfellowii F0264]
 gi|261747372|gb|EEY34842.1| putative integrase [Leptotrichia goodfellowii F0264]
          Length = 356

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 77/162 (47%), Gaps = 10/162 (6%)

Query: 53  GSTPKREY---INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF 109
           G   K++Y    NS  +   TL  LI +YRK+     L  N++     YF+ II+  GD 
Sbjct: 40  GEIAKKDYEQTSNSFSQSIATLSDLIEDYRKNYINIFLRENTKRIRNYYFNIIIKDIGDT 99

Query: 110 DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
             +K+  +  +  +   K  P++  +FL S   LF +AVR E ++ NP  +V  PK +  
Sbjct: 100 KLQKMNVRFFQDYIVKTKD-PNNIKKFLNS---LFNYAVRVELISKNPIKNVIVPKAEKI 155

Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY-SGLRCSDSC 210
                T ED++  K+   E  +    F   +Y +G+R S+  
Sbjct: 156 DFDLITPEDIEIIKNM--EIREVLKDFILFIYLTGVRPSEGL 195


>gi|212692864|ref|ZP_03300992.1| hypothetical protein BACDOR_02364 [Bacteroides dorei DSM 17855]
 gi|212664653|gb|EEB25225.1| hypothetical protein BACDOR_02364 [Bacteroides dorei DSM 17855]
          Length = 407

 Score = 50.1 bits (118), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 47/207 (22%), Positives = 87/207 (42%), Gaps = 18/207 (8%)

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRP--WTKEDMQQFKSFWSEGSQP--RLAFEF 198
           + ++A+  + +  +PC SV   K  ++ +R    + E++Q+  +   +   P  R AF F
Sbjct: 200 VIRYAIDHDVMLKDPCKSVT-CKVDSQMLRKDVLSPEEIQKLAACHYDNENPNVRRAFIF 258

Query: 199 LLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKT-----GTIITVELPDGFMKLLAMTPIG 251
            LYSGLR  D      +++   N +   +  KT      + + + L DG + ++   P  
Sbjct: 259 CLYSGLRFCDVKDLTYKNVDYANRLLKFEQSKTKGHSASSGVVIPLNDGLLSIIGEAPAD 318

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMA 309
           K     +    +        W K    +AG++K  S H  R   A    + GA    + +
Sbjct: 319 KNCLIFDLPTYESCCKSVKRWVK----RAGIDKHISWHCARHSFAVNILNNGANIKTVAS 374

Query: 310 TYGWKTVDQAETYTKGADRIRLGIKNS 336
             G   +   E YT+  D+++    NS
Sbjct: 375 LLGHSGLKHTEKYTRAVDKLKEEAINS 401


>gi|295692872|ref|YP_003601482.1| tyrosine recombinase xerd [Lactobacillus crispatus ST1]
 gi|295030978|emb|CBL50457.1| Tyrosine recombinase xerD [Lactobacillus crispatus ST1]
          Length = 301

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 52/224 (23%), Positives = 95/224 (42%), Gaps = 23/224 (10%)

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKSFW 186
           SS  + ++SMR  ++W  RQ    +NP L ++ PK++       ++ +M    +Q  +  
Sbjct: 72  SSISRLISSMRKFYQWLARQNIQKLNPMLEIDLPKKERRLPTALSQAEMNRLLEQPNTKR 131

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT------IITVELP-- 238
             G + R   E L  +G+R S+     +Q L +N+  ++    G       I  V L   
Sbjct: 132 KLGIRDRAILETLYATGMRVSELINLELQDLHDNLGLVRVLGKGEKERLIPISPVALDWI 191

Query: 239 ---DGFMKLLAMTPIGK--ETFFINNDKQKMNATQFSIW--FKAKATKAGVNKSA--HGV 289
              +  ++   +  +GK  E  F+NN  +K+  T+ +IW   K     A + K    H +
Sbjct: 192 KKYENEVRDPLILQVGKSDEHIFLNNRGKKI--TRQAIWQMIKKYCQMAAITKDVTPHTL 249

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           R   AT   + GA    +    G   +   + YT  + +  L +
Sbjct: 250 RHTFATHLLENGADLRVVQEILGHSDISTTQIYTNLSQKQILNV 293


>gi|238786426|ref|ZP_04630347.1| Phage integrase [Yersinia bercovieri ATCC 43970]
 gi|238712669|gb|EEQ04760.1| Phage integrase [Yersinia bercovieri ATCC 43970]
          Length = 270

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 72/163 (44%), Gaps = 15/163 (9%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
           +PP     R R GK  Y FR   GR IRL    E +    +++         E +   +K
Sbjct: 13  MPP-----RVRKGKSAYEFRAIDGRTIRL-CSFECSQADVWIAF--------EKLMISQK 58

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
           + +T   LI+E+  S  +  LA +++  +  Y  +II   G      I  +HIR  ++ R
Sbjct: 59  EDSTFAGLINEFLLSGDFCELAFDTQKDYRKYSSKIIAVFGKMSPDNIKPEHIRKYMDKR 118

Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168
              +   A +  + M  +F+W      V +NPC  V++ K K 
Sbjct: 119 GAKSRVQANREKSFMSRVFRWGYEHGKVKLNPCQGVKQFKEKA 161


>gi|77457252|ref|YP_346757.1| site-specific tyrosine recombinase XerD [Pseudomonas fluorescens
           Pf0-1]
 gi|77381255|gb|ABA72768.1| integrase/recombinase [Pseudomonas fluorescens Pf0-1]
          Length = 298

 Score = 49.3 bits (116), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 55/239 (23%), Positives = 104/239 (43%), Gaps = 23/239 (9%)

Query: 112 RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
           R++   H+   +E + + P S  +FL+ +R  +++ +R++ ++++P L V+ P+      
Sbjct: 53  RELILDHLAWRLE-QNYKPRSTARFLSGVRGFYRYLLREKLISVDPTLRVDMPQLGRPLP 111

Query: 172 RPWTKEDMQQFKSF--WSE--GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227
           +  ++ D++        SE  G + R   E L   GLR ++     ++ +      ++  
Sbjct: 112 KSLSEADVEALLKAPDLSEAIGQRDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVM 171

Query: 228 KTGT-----------IITVE--LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274
             G+           I+ VE  L DG  +LL   P   +  F +   ++M    F    K
Sbjct: 172 GKGSKERLVPMGEEAIVWVERYLRDGRGELLGGRP--SDVLFPSQRGEQMTRQTFWHRIK 229

Query: 275 AKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            +A  AG++KS   H +R   AT   + GA    +    G   +   + YT  A R RL
Sbjct: 230 HQAKVAGISKSLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARL 287


>gi|260593346|ref|ZP_05858804.1| integrase/recombinase XerD [Prevotella veroralis F0319]
 gi|260534622|gb|EEX17239.1| integrase/recombinase XerD [Prevotella veroralis F0319]
          Length = 314

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 47/213 (22%), Positives = 87/213 (40%), Gaps = 21/213 (9%)

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK-----S 184
           P S  + L+ +R  +++ V   Y+ ++P   +E PK+        +  ++   +     S
Sbjct: 72  PRSLARILSGVRQFYRFLVLDGYLEVDPTELLESPKQPNHLPEVLSTAEVDLLEQAIDLS 131

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---IITVELPDGF 241
            W EG + R   E L   GLR S+     + +L      ++    G+   ++ +  P   
Sbjct: 132 KW-EGHRNRAIIEVLFSCGLRVSELTHLTLSNLYIEEQYLRVLGKGSKERLVPIS-PRAL 189

Query: 242 MKL---------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290
            +L         + + P  ++  F+N     +  T   I  K  A +AG+ K  S H +R
Sbjct: 190 EELSYWFDDRNKMDIKPGEEDYVFLNRRGHHLTRTMILIMIKRYAVEAGIKKTISPHTLR 249

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYT 323
              AT   + GA    + A  G +++   E YT
Sbjct: 250 HSFATSLLEGGADLRAIQAMLGHESIGTTEIYT 282


>gi|94986683|ref|YP_594616.1| site-specific recombinase [Lawsonia intracellularis PHE/MN1-00]
 gi|94730932|emb|CAJ54295.1| site-specific recombinase [Lawsonia intracellularis PHE/MN1-00]
          Length = 306

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 86/218 (39%), Gaps = 32/218 (14%)

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPK---------RKTEGIRPWTKEDMQQFKSFWS 187
           L+S+R  F W V ++ +  NP L ++ PK          + E +R  T  D+        
Sbjct: 78  LSSIRNFFHWCVEEDILLSNPALLIDGPKLPSLLPNILSQDEMLRLLTTPDITN-----K 132

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLL- 245
            G + ++  E L  SG+R S+     V     +   IK   K G    + L    MKLL 
Sbjct: 133 LGFRDKVILELLYASGIRVSELIGVHVLDFDQDKGIIKVFGKGGKERYIPLHSSAMKLLI 192

Query: 246 --------AMTPIGKETFFINNDKQKMNATQFSIW--FKAKATKAGVNKSA--HGVRKFS 293
                     TPI K  F    ++     T+ +IW   K  A  A +NKS   H  R   
Sbjct: 193 HYVQKIRPMFTPIEKFLFL---NRSGKGLTRQAIWKIIKRYALLASINKSISPHTFRHTF 249

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330
           AT   + GA    +    G   +   E YT   +DR++
Sbjct: 250 ATHLLEGGADLRSVQLLLGHVDMSATELYTHVQSDRLK 287


>gi|220925261|ref|YP_002500563.1| integrase family protein [Methylobacterium nodulans ORS 2060]
 gi|219949868|gb|ACL60260.1| integrase family protein [Methylobacterium nodulans ORS 2060]
          Length = 588

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 75/345 (21%), Positives = 130/345 (37%), Gaps = 79/345 (22%)

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG-DFDYR 112
            T +R + +SP++   TL  LISE+ K    G+    +   +   F  +    G D + +
Sbjct: 225 DTARRSHDSSPKR---TLNALISEFEKDPGRGARTGKTNTDYRMVFTAMREIIGPDTEVQ 281

Query: 113 KITTKH------------------------IRSG-VESRKHTPSSAIQ----FLTSMRVL 143
            I+ +H                        +++G +  R    +  IQ     LT M  +
Sbjct: 282 SISREHTKRVRDLFLALPPNATKRFPGMTLLQAGELAQRNRLATLNIQTINSHLTKMSTM 341

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE--------------- 188
           F WA+++E++  NP   +   + +     P+   D++Q ++ +S                
Sbjct: 342 FNWAIKEEWIGRNPASGLAIDEVQKNKREPF---DLEQLRAIFSAPIYAGCQDDEAGYAK 398

Query: 189 --GSQPRLAFEFL----LYSGLRCSDSCRAGVQHL--QNNIFSIKTQ----------KTG 230
             GS PR A  ++    L+ GLR +++C+  V+ L  +N I  +  +          K G
Sbjct: 399 PGGSHPRRARFWVPLLSLFHGLRLNEACQLRVEDLAERNGITVLHVRAADADQRIKSKAG 458

Query: 231 TIITVELPD----GFMKLLAMTPI-GKETFF--INNDKQKMNATQFSIWFKAKATKAGVN 283
           T I    P+    GF+  +   P+ G    F  +  D +   +  F  WF       G  
Sbjct: 459 TRIVPLHPEVIKIGFVDYVRDLPVEGDGRIFPELQKDTRGYYSDAFQKWFSRFLHSCGAA 518

Query: 284 KSA---HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           K+    H  R   A    +AG       A  GW +      Y KG
Sbjct: 519 KTGTKFHSFRHGWADRLREAGVPEDRRRALGGWASTGADAGYGKG 563


>gi|170723312|ref|YP_001751000.1| site-specific tyrosine recombinase XerD [Pseudomonas putida W619]
 gi|169761315|gb|ACA74631.1| tyrosine recombinase XerD [Pseudomonas putida W619]
          Length = 298

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 57/266 (21%), Positives = 113/266 (42%), Gaps = 28/266 (10%)

Query: 86  SLAVNSRISFES---YFDQIIRKSG---DFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
            L+ N+R+S+ S    F+  ++  G       R++   H+   ++ + + P S  +FL+ 
Sbjct: 21  GLSDNTRVSYRSDLALFNGWLQDHGLALPAAGRELILDHLAWRLD-QGYKPRSTARFLSG 79

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFWSEGSQPRLA 195
           +R  F++ +R++ +A++P L +E P+      +  ++ D    +Q      + G + R  
Sbjct: 80  LRGFFRYLLREKLIAVDPTLQIEMPQLGKPLPKSLSEADVDALLQAPDLGEAIGQRDRAM 139

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-----------IITVE--LPDGFM 242
            E L   GLR ++     +  +      ++    G+           ++ +E  L DG +
Sbjct: 140 LEVLYACGLRVTELVSLALDQVNLRQGVLRVMGKGSKERLVPMGEEAVLWLERYLRDGRV 199

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
           +LL   P   +  F +   ++M    F    K  A  AG++K  S H +R   AT   + 
Sbjct: 200 ELLNGRP--SDVLFPSLRGEQMTRQTFWHRIKHHARIAGIDKPLSPHTLRHAFATHLLNH 257

Query: 301 GATAHELMATYGWKTVDQAETYTKGA 326
           GA    +    G   +   + YT  A
Sbjct: 258 GADLRVVQMLLGHSDLSTTQIYTHVA 283


>gi|322381748|ref|ZP_08055702.1| site-specific tyrosine recombinase XerD-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321154136|gb|EFX46458.1| site-specific tyrosine recombinase XerD-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 298

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 49/213 (23%), Positives = 92/213 (43%), Gaps = 20/213 (9%)

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KSF 185
           P++  + L S+R L+ + +R++ + ++P   VE PK +T+     T E+M        + 
Sbjct: 67  PATISRTLVSIRALYHYLIREQVMTLDPSGQVESPKAETKIPVILTVEEMDNLLGVPNTG 126

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
            S G + +   E L  +G+R S+        +  ++  ++   TG    + +P G +  L
Sbjct: 127 TSSGLRDKAMLELLYATGIRVSELITLNKGDIYADLGYVRCTGTGGKERI-VPMGKVATL 185

Query: 246 -----------AMTPIGK--ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290
                      A+   GK  +  F+N+   +M    F    K  AT+AG++K  + H +R
Sbjct: 186 WIQRYLNEAREALLKEGKPDKALFLNHIGTRMTRQGFWKMMKKYATEAGIHKEITPHTLR 245

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYT 323
              AT   + GA    +    G   +   + YT
Sbjct: 246 HSFATHLLENGADLRAVQELLGHSDLSTTQRYT 278


>gi|312200707|ref|YP_004020768.1| integrase family protein [Frankia sp. EuI1c]
 gi|311232043|gb|ADP84898.1| integrase family protein [Frankia sp. EuI1c]
          Length = 500

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/138 (23%), Positives = 58/138 (42%), Gaps = 18/138 (13%)

Query: 96  ESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI 155
           +++ D +IR+  D +               RK  P +  +   ++R     AV    ++ 
Sbjct: 133 KAHIDALIRRLEDSN-----------ATRRRKIGPKTIAEIFGTLRAALNDAVDNRLISF 181

Query: 156 NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA--FEFLLYSGLRCSDSCRAG 213
           NPC  VE P+     + PW   + ++   F  E +  RL+  FE +   GLR  ++C   
Sbjct: 182 NPCNGVELPENDRAEVEPW---EAKEIGRFLDEAAGDRLSALFELIALHGLRRGEACGGT 238

Query: 214 VQHL--QNNIFSIKTQKT 229
              L  +  + +I+ Q T
Sbjct: 239 WDGLDGETGVLTIRQQIT 256


>gi|26988201|ref|NP_743626.1| site-specific tyrosine recombinase XerD [Pseudomonas putida KT2440]
 gi|148549459|ref|YP_001269561.1| site-specific tyrosine recombinase XerD [Pseudomonas putida F1]
 gi|34222835|sp|Q88MV0|XERD_PSEPK RecName: Full=Tyrosine recombinase xerD
 gi|24982938|gb|AAN67090.1|AE016337_13 integrase/recombinase XerD [Pseudomonas putida KT2440]
 gi|148513517|gb|ABQ80377.1| tyrosine recombinase XerD subunit [Pseudomonas putida F1]
          Length = 298

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 52/216 (24%), Positives = 87/216 (40%), Gaps = 21/216 (9%)

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---- 185
           P S  +FL+ +R  F++ +R++ VAI+P L V+ P+      +  ++ D++         
Sbjct: 70  PRSTARFLSGLRGFFRYLLREKLVAIDPTLQVDMPQLGKPLPKSLSEADVEALLQAPDLG 129

Query: 186 WSEGSQPRLAFEFLLYSGLRCSD---------SCRAGVQHLQNNIFSIKTQKTGTIITVE 236
            + G + R   E L   GLR ++         + R GV  +       +    G    V 
Sbjct: 130 EAIGQRDRAMLEVLYACGLRVTELVSLTLDQVNLRQGVLRVMGKGSKERLVPMGEEAVVW 189

Query: 237 LP----DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290
           L     DG  +LL   P   +  F +   ++M    F    K  A  AG++K  S H +R
Sbjct: 190 LERYQRDGRAELLNGRP--SDVLFPSQRGEQMTRQTFWHRIKHHARVAGIDKPLSPHTLR 247

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
              AT   + GA    +    G   +   + YT  A
Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA 283


>gi|254478334|ref|ZP_05091713.1| site-specific recombinase, phage integrase family
           [Carboxydibrachium pacificum DSM 12653]
 gi|214035692|gb|EEB76387.1| site-specific recombinase, phage integrase family
           [Carboxydibrachium pacificum DSM 12653]
          Length = 373

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 74/167 (44%), Gaps = 8/167 (4%)

Query: 48  MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKS 106
           ++ +     K E+I   +    TL+  I+E+ K       A  + +S +S  D  II   
Sbjct: 44  LAEIIAKIEKNEFIEPSK---ITLQQFINEWLKIYGEPKWAPKTLVSNKSLIDNYIIPNL 100

Query: 107 GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL---FKWAVRQEYVAINPCLSVER 163
           G  + +K+    I+    S K    S        R+L    K+AV+ +Y+A NPC  VE 
Sbjct: 101 GHIELQKLKPVEIQKFYNSLKEKQLSNTTINYVHRLLNQVLKFAVKWQYIAKNPCELVEA 160

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210
           PK+  +    W  E +++ K  + + +   +     LY+GLR  + C
Sbjct: 161 PKKDKKEFVTWNFEHVKKAKKIFKD-TPIYIHVMIALYTGLRLGEIC 206


>gi|313500307|gb|ADR61673.1| XerD [Pseudomonas putida BIRD-1]
          Length = 298

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 52/216 (24%), Positives = 87/216 (40%), Gaps = 21/216 (9%)

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---- 185
           P S  +FL+ +R  F++ +R++ VAI+P L V+ P+      +  ++ D++         
Sbjct: 70  PRSTARFLSGLRGFFRYLLREKLVAIDPTLQVDMPQLGKPLPKSLSEADVEALLQAPDLG 129

Query: 186 WSEGSQPRLAFEFLLYSGLRCSD---------SCRAGVQHLQNNIFSIKTQKTGTIITVE 236
            + G + R   E L   GLR ++         + R GV  +       +    G    V 
Sbjct: 130 EAIGQRDRAMLEVLYACGLRVTELVSLTLDQVNLRQGVLRVMGKGSKERLVPMGEEAVVW 189

Query: 237 LP----DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290
           L     DG  +LL   P   +  F +   ++M    F    K  A  AG++K  S H +R
Sbjct: 190 LDRYQRDGRAELLNGRP--SDVLFPSQRGEQMTRQTFWHRIKHHARVAGIDKPLSPHTLR 247

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
              AT   + GA    +    G   +   + YT  A
Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA 283


>gi|330999644|ref|ZP_08323353.1| site-specific recombinase, phage integrase family [Parasutterella
           excrementihominis YIT 11859]
 gi|329574150|gb|EGG55726.1| site-specific recombinase, phage integrase family [Parasutterella
           excrementihominis YIT 11859]
          Length = 358

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/113 (24%), Positives = 55/113 (48%), Gaps = 9/113 (7%)

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF--KSFW 186
           +PS+  + LT +  +F++A++ E   +NPC  VE+P+      R  + ED+++    S W
Sbjct: 124 SPSTVNRELTILSDVFQFAIKNELTDVNPCRGVEKPREPEHRERVASDEDIEKLLQASGW 183

Query: 187 SEGSQPR-------LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
              + P+        AF F   +G+R  +  +     L +N+  +  + T T+
Sbjct: 184 DGHTVPKNKMQLAVAAFLFSCQTGMRAGELLKIEYSWLGDNVLHVPAEATKTL 236


>gi|167036461|ref|YP_001664039.1| phage integrase family protein [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|320114886|ref|YP_004185045.1| integrase family protein [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
 gi|166855295|gb|ABY93703.1| phage integrase family protein [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|319927977|gb|ADV78662.1| integrase family protein [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
          Length = 373

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 74/167 (44%), Gaps = 8/167 (4%)

Query: 48  MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKS 106
           ++ +     K E+I   +    TL+  I+E+ K       A  + +S +S  D  II   
Sbjct: 44  LAEIIAKIEKNEFIEPSK---ITLQQFINEWLKIYGEPKWAPKTLVSNKSLIDNYIIPNL 100

Query: 107 GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL---FKWAVRQEYVAINPCLSVER 163
           G  + +K+    I+    S K    S        R+L    K+AV+ +Y+A NPC  VE 
Sbjct: 101 GHIELQKLKPVEIQKFYNSLKEKQLSNTTINYVHRLLNQVLKFAVKWQYIAKNPCELVEA 160

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210
           PK+  +    W  E +++ K  + + +   +     LY+GLR  + C
Sbjct: 161 PKKDKKEFVTWNFEHVKKAKKIFKD-TPIYIHVMIALYTGLRLGEIC 206


>gi|330969023|gb|EGH69089.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           aceris str. M302273PT]
          Length = 298

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 59/245 (24%), Positives = 105/245 (42%), Gaps = 23/245 (9%)

Query: 112 RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
           R++   H+   VE+  + P S  +FL+  R  +++ +R++ +A++P L ++ P+      
Sbjct: 53  REVILDHLAWRVEN-AYKPRSTARFLSGARGFYRYLLREKLIAVDPTLQIDMPQLGKPLP 111

Query: 172 RPWTKEDMQQFKSF--WSE--GSQPRLAFEFLLYSGLRCSD---------SCRAGVQHLQ 218
           +  ++ D++   +    SE  G + R   E L   GLR ++         + R GV  + 
Sbjct: 112 KSLSEADVEALLAAPDLSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVM 171

Query: 219 NNIFSIKTQKTG--TIITVE--LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274
                 +    G  +I+ VE  L     +LL   P   +  F +    +M    F    K
Sbjct: 172 GKGSKERLVPMGEESIVWVERYLRGARDELLGGKP--SDVLFPSTRGDQMTRQTFWHRIK 229

Query: 275 AKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
            +AT AG+ KS   H +R   AT   + GA    +    G   +   + YT  A R RL 
Sbjct: 230 HQATVAGIGKSLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARLQ 288

Query: 333 IKNSR 337
             ++R
Sbjct: 289 EMHAR 293


>gi|302382463|ref|YP_003818286.1| integrase [Brevundimonas subvibrioides ATCC 15264]
 gi|302193091|gb|ADL00663.1| integrase family protein [Brevundimonas subvibrioides ATCC 15264]
          Length = 402

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 84/376 (22%), Positives = 141/376 (37%), Gaps = 45/376 (11%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPK-REYINSPRKK 67
           PFV + R  +G +  YFR+G  R   L  P  S  + A + A+     K  + I  P   
Sbjct: 16  PFVQRVRKPNGDVHLYFRRGAFREGPLKSPDGSPELKAEIDAILERVRKASDAIARP--A 73

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK---HIRSGVE 124
             T+  ++  Y KSA + SLA  ++  ++ Y D++I  +GD    ++T      +R    
Sbjct: 74  AGTVGGMLKAYNKSAEFLSLARITQRGYQDYIDELIADTGDLLLSEVTRSWVIGMRDAWA 133

Query: 125 SRKHTPSSA-IQFLTSMRVLFKWAVRQEYVAINP---CLSVERPKRKTEGIRPWTKEDMQ 180
            R H  ++  +Q L +  +        + +  +P      V RP    E    W   +++
Sbjct: 134 LRGHNAANKRMQVLKNALMPAIEDDTDQRIQGDPFHKVRKVRRPHDAGEAHPAWELAEVE 193

Query: 181 QFKSFWSEGSQPRLAFEFLL--YSGLR----------CSDSCRAGVQHLQNNIFSIKTQK 228
                     QP LA    L  Y G R               R G    +  +  I +++
Sbjct: 194 IAIEEAIRRDQPGLARAIALGRYGGFRRGTIVSIPLNARTLGRDGRGEPETRLVWITSKR 253

Query: 229 TGTIITVELPDG-FMKLLAMTPIGKETFFINNDKQKMNATQFS---------------IW 272
              +++ +  D     ++A TP    T   N      +  QF                I 
Sbjct: 254 --QVLSDKREDARLAAVIARTPNRALTIAYNKRGDPFSVRQFDQALERLLDRLAADGKIR 311

Query: 273 FKAKATKAGVNK-----SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
              K T  G +      + HG+R       A+AGA+  E+MA     +   A+ Y + A 
Sbjct: 312 ATIKRTSDGRDVVVCPLTIHGLRHARGVELAEAGASDAEIMAQLEHASDAAAKIYRRQAQ 371

Query: 328 RIRLGIKNSRRISSVV 343
           R ++      RI +VV
Sbjct: 372 RRKMADAGQDRIDNVV 387


>gi|168703879|ref|ZP_02736156.1| integrase/recombinase [Gemmata obscuriglobus UQM 2246]
          Length = 301

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 53/231 (22%), Positives = 94/231 (40%), Gaps = 23/231 (9%)

Query: 115 TTKHIRSGV---ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
           TT+ +RS V     + +  S+  + L ++R   K+  R   + +NP L++  PK+  +  
Sbjct: 54  TTRTVRSFVSWLHEQGYAKSTIARRLAAVRSFSKYLCRAGVLDVNPALALRGPKQDKKLP 113

Query: 172 RPWTKEDMQQF-----KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSI 224
              T  D+Q+       + W+ G + R   E L  SG+R S+     +    L + + ++
Sbjct: 114 HFLTLADVQKLLTAPPATDWA-GRRDRAVLETLYASGIRVSELVGLDLLAVDLNDGVITV 172

Query: 225 KTQKTGTIITVELPDGFM----------KLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274
           + +     + +  PD              LLA T    E  F+NN   ++          
Sbjct: 173 RGKGKKERLALLGPDAVKAITLWYEDRSALLARTGQETEAVFLNNKGGRLTTRSVGRLLS 232

Query: 275 AKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
                AG++   S H +R   AT   DAGA    +    G K++   + YT
Sbjct: 233 HHLKVAGLDPRTSPHTLRHSFATHMLDAGADIRGVQELLGHKSLATTQVYT 283


>gi|302187933|ref|ZP_07264606.1| site-specific recombinase, phage integrase family protein
           [Pseudomonas syringae pv. syringae 642]
          Length = 328

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 49/229 (21%), Positives = 98/229 (42%), Gaps = 12/229 (5%)

Query: 87  LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKW 146
           L+VN+   +E+   ++     +F+ R++  +H+ +       TP+ A + ++ +R++F +
Sbjct: 70  LSVNTIKQYEAASVRLKTYLEEFEPRQVLPRHVAALKLHMSDTPNMANRVISFLRMVFAY 129

Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ-PRLAFEFLLYSGLR 205
           A+ ++ V  NPC  +   +R  E  R     D  +F +  +  S+   + +E    +G R
Sbjct: 130 ALERQIVDSNPCTGI---RRHAEKKRDRYISD-AEFAAICAASSEYMSVIWEMCFLTGQR 185

Query: 206 CSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI------GKETFFINN 259
            SD     +  + +   + + QKTG  + V +      LL           G   F   +
Sbjct: 186 ISDVLNIKLSDISDIGIAFEQQKTGAKLIVGMSQDLKALLDRVHALPRKIRGATLFCARS 245

Query: 260 DKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHEL 307
             + ++     + F+A    AGV   + H +R  S T +   G  A  L
Sbjct: 246 GGKPVSYDTCKMSFRAACKAAGVIGATIHDLRAKSLTDTDRQGNNAQML 294


>gi|227879087|ref|ZP_03996976.1| integrase-recombinase [Lactobacillus crispatus JV-V01]
 gi|256843076|ref|ZP_05548564.1| tyrosine recombinase XerD [Lactobacillus crispatus 125-2-CHN]
 gi|256850272|ref|ZP_05555701.1| integrase/recombinase [Lactobacillus crispatus MV-1A-US]
 gi|262046336|ref|ZP_06019298.1| tyrosine recombinase XerD [Lactobacillus crispatus MV-3A-US]
 gi|293379759|ref|ZP_06625891.1| tyrosine recombinase XerD [Lactobacillus crispatus 214-1]
 gi|312977261|ref|ZP_07789009.1| tyrosine recombinase XerD [Lactobacillus crispatus CTV-05]
 gi|227861328|gb|EEJ68958.1| integrase-recombinase [Lactobacillus crispatus JV-V01]
 gi|256614496|gb|EEU19697.1| tyrosine recombinase XerD [Lactobacillus crispatus 125-2-CHN]
 gi|256712909|gb|EEU27901.1| integrase/recombinase [Lactobacillus crispatus MV-1A-US]
 gi|260573207|gb|EEX29765.1| tyrosine recombinase XerD [Lactobacillus crispatus MV-3A-US]
 gi|290923668|gb|EFE00539.1| tyrosine recombinase XerD [Lactobacillus crispatus 214-1]
 gi|310895692|gb|EFQ44758.1| tyrosine recombinase XerD [Lactobacillus crispatus CTV-05]
          Length = 301

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 51/224 (22%), Positives = 95/224 (42%), Gaps = 23/224 (10%)

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKSFW 186
           SS  + ++SMR  ++W  RQ    +NP L ++ PK++       ++ +M    +Q  +  
Sbjct: 72  SSISRLISSMRKFYQWLARQNIQKLNPMLEIDLPKKERRLPTALSQAEMNRLLEQPNTKR 131

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT------IITVELP-- 238
             G + R   E L  +G+R S+     +Q L +++  ++    G       I  V L   
Sbjct: 132 KLGIRDRAILETLYATGMRVSELINLELQDLHDDLGLVRVLGKGEKERLIPISPVALDWI 191

Query: 239 ---DGFMKLLAMTPIGK--ETFFINNDKQKMNATQFSIW--FKAKATKAGVNKSA--HGV 289
              +  ++   +  +GK  E  F+NN  +K+  T+ +IW   K     A + K    H +
Sbjct: 192 KKYENEVRDPLILQVGKSDEHIFLNNRGKKI--TRQAIWQMIKKYCQMAAITKDVTPHTL 249

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           R   AT   + GA    +    G   +   + YT  + +  L +
Sbjct: 250 RHTFATHLLENGADLRVVQEILGHSDISTTQIYTNLSQKQILNV 293


>gi|78042632|ref|YP_360783.1| tyrosine recombinase XerD [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77994747|gb|ABB13646.1| tyrosine recombinase XerD [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 287

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 54/227 (23%), Positives = 93/227 (40%), Gaps = 20/227 (8%)

Query: 115 TTKHIRSGVE--SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
           T+K I+  ++  +RK  P+S  + L ++R  +K+ +R++ V  NP L V+ PK   +   
Sbjct: 45  TSKDIKLYLQDLARKLKPASVARNLAAIRSFYKYLLREKIVGENPALDVDGPKLGLKLPE 104

Query: 173 PWTKEDMQQF-----KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227
             + E++         S W EG + R   E L  +GLR S+     + +L  +   +K  
Sbjct: 105 ILSYEEIDLLLKAPDLSTW-EGVRDRAMLELLYATGLRVSELVNLELPNLYLDERYVKIL 163

Query: 228 KTGTIITVELPDG---------FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKAT 278
             G  + + +P G         ++ L A         FI           F    K    
Sbjct: 164 GKGAKMRI-VPFGEVAAHYLNQYLALRAKRKSNSLKLFITRKGSGFTRQGFWKMLKRYGQ 222

Query: 279 KAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           KAG+  N + H +R   AT   + GA    +    G   ++  + YT
Sbjct: 223 KAGIVKNLTPHLIRHSFATHLLENGADLRIVQELLGHSFIETTQIYT 269


>gi|51596111|ref|YP_070302.1| integrase [Yersinia pseudotuberculosis IP 32953]
 gi|51589393|emb|CAH21015.1| putative integrase [Yersinia pseudotuberculosis IP 32953]
          Length = 340

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 56/226 (24%), Positives = 93/226 (41%), Gaps = 18/226 (7%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
           +PP     R R GK  Y FR   GR IRL    E +    +++         E +   +K
Sbjct: 13  MPP-----RVRKGKSAYEFRAIDGRTIRL-CNFECSQADVWVAF--------EKLMINQK 58

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
           + +T   LI+E+  S  +  LA  ++  +  Y  +II   G      I  +HIR  ++ R
Sbjct: 59  EDSTFTGLINEFLLSGDFCELASETQKDYHKYSSKIIAVFGKMSPDNIRPEHIRKYMDKR 118

Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
              +   A +  + M  +F+W   +  V +NPC  V++ K K   +R     D +    +
Sbjct: 119 GAKSRVQANREKSFMSRVFRWGYERGKVKLNPCQGVKQFKEK---VRTRYITDEEYTALY 175

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
            +  S  ++A E       R +D        L  +   I+  KTG 
Sbjct: 176 DTAPSVVKVAMELAYLCCTRQADILDMKKGQLLESGILIQQSKTGV 221


>gi|317504379|ref|ZP_07962363.1| integrase/recombinase XerD [Prevotella salivae DSM 15606]
 gi|315664501|gb|EFV04184.1| integrase/recombinase XerD [Prevotella salivae DSM 15606]
          Length = 307

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 51/229 (22%), Positives = 82/229 (35%), Gaps = 53/229 (23%)

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-- 187
           P S  + L+ +R  F++ +   Y+  +P   +E P          + E++ + +      
Sbjct: 73  PRSQSRILSGIRSFFRFLLLDGYIDNDPTELLESPVLGQHLPEVLSTEEVDRLEESIDLS 132

Query: 188 --EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
             EG + R   E L   GLR S+     +  L                   L DGF+++L
Sbjct: 133 KPEGQRNRTIIEVLFSCGLRVSELVHLKLSELY------------------LDDGFIRVL 174

Query: 246 A------MTPI----------------------GKETF-FINNDKQKMNATQFSIWFKAK 276
                  + PI                      G+E F F+N     +  T   I  K +
Sbjct: 175 GKGSKERLVPISPRAIKELRLWFADRVHLDIKPGEEDFVFLNRRGHHLTRTMILIMIKRQ 234

Query: 277 ATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           A +AG+ K  S H +R   AT     GA    + A  G + +   E YT
Sbjct: 235 AEEAGIKKTISPHTLRHSFATALLQGGADLRAIQAMLGHEHIGTTEIYT 283


>gi|303236823|ref|ZP_07323402.1| tyrosine recombinase XerD [Prevotella disiens FB035-09AN]
 gi|302482991|gb|EFL46007.1| tyrosine recombinase XerD [Prevotella disiens FB035-09AN]
          Length = 318

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 89/210 (42%), Gaps = 19/210 (9%)

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK-----SFW 186
           S  + L+ +R  F++ V + Y+  +P   +E PK+        + E++   +     S W
Sbjct: 85  SLARILSGVRQFFRYLVLEGYIEADPTELLESPKQPQHLPEVLSTEEVDSLENAIDLSKW 144

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---IITV------EL 237
            EG + +   E L   GLR S+     + +L  +   ++    G+   ++ +      EL
Sbjct: 145 -EGHRNKAIIEVLFSCGLRVSELTNLKLSNLYADEQFVRVMGKGSKERLVPISPRALKEL 203

Query: 238 PDGFMKLLAM-TPIGKETF-FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFS 293
              F+    M    G+E F F+N     +  T   I  K  A +AG+ K  S H +R   
Sbjct: 204 NFWFIDRNQMKIKEGEEDFVFLNRRGAHLTRTMILIMIKKYAQEAGIKKTISPHTLRHSF 263

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYT 323
           AT   + GA    + A  G +++   E YT
Sbjct: 264 ATALLEGGADLRAIQAMLGHESIGTTEIYT 293


>gi|302185529|ref|ZP_07262202.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           syringae 642]
          Length = 298

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 58/245 (23%), Positives = 106/245 (43%), Gaps = 23/245 (9%)

Query: 112 RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
           R++   H+   VE+  + P S  +FL+  R  +++ +R++ ++++P L ++ P+      
Sbjct: 53  REVILDHLAWRVEN-AYKPRSTARFLSGARGFYRYLLREKLISVDPTLQIDMPQLGKPLP 111

Query: 172 RPWTKEDMQQFKSF--WSE--GSQPRLAFEFLLYSGLRCSD---------SCRAGVQHLQ 218
           +  ++ D++   +    SE  G + R   E L   GLR ++         + R GV  + 
Sbjct: 112 KSLSEADVEALLAAPDLSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVM 171

Query: 219 NNIFSIKTQKTG--TIITVE--LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274
                 +    G  +I+ VE  L     +LL   P   +  F +   ++M    F    K
Sbjct: 172 GKGSKERLVPMGEESIVWVERYLRGARDELLGGKP--SDVLFPSTRGEQMTRQTFWHRIK 229

Query: 275 AKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
            +AT AG+ KS   H +R   AT   + GA    +    G   +   + YT  A R RL 
Sbjct: 230 HQATVAGIGKSLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARLQ 288

Query: 333 IKNSR 337
             ++R
Sbjct: 289 EMHAR 293


>gi|220904455|ref|YP_002479767.1| tyrosine recombinase XerD [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219868754|gb|ACL49089.1| tyrosine recombinase XerD [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 310

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 54/227 (23%), Positives = 95/227 (41%), Gaps = 22/227 (9%)

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           + +R++T  +  + L+++R  F +AV++  +  NP   ++ PK         ++++M+  
Sbjct: 75  LRARQNTGRTLARRLSALRAFFDFAVQENAIKNNPAQLLDNPKLPQHLPEVLSRDEMESL 134

Query: 183 KS---FWSEGSQ-PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII-TVEL 237
            +       G Q  R   E L  +GLR S+ C   +  L      ++    G     V L
Sbjct: 135 LARPDLRDRGGQRDRCILELLYAAGLRVSELCDLCLPDLDLQRGLVRVFGKGAKERLVPL 194

Query: 238 PDGFMKLL---------AMTPIGKETFFINNDKQKMNATQFSIW--FKAKATKAGVNK-- 284
            D    +L         A +P G +  F+N   + +  T+  IW   K  A +AG+ +  
Sbjct: 195 HDLMQNMLENYIRDWRPAFSPTGNQ-LFVNRSGRAL--TRQYIWKMVKKYALEAGIRRPV 251

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330
           S H  R   AT   + GA    +    G   +   E YT   A+R+R
Sbjct: 252 SPHTFRHSFATHLLEGGADLRAVQLLLGHADISATEIYTHVQAERLR 298


>gi|48477921|ref|YP_023627.1| DNA integration/recombination/invertion protein [Picrophilus
           torridus DSM 9790]
 gi|48430569|gb|AAT43434.1| DNA integration/recombination/invertion protein [Picrophilus
           torridus DSM 9790]
          Length = 276

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 65/151 (43%), Gaps = 10/151 (6%)

Query: 187 SEGSQPRLAF-EFLLYSGLRCSDSCRAGVQH--LQNNIFSIKTQKTGTIITVELPDGFMK 243
           S  ++  LA    LLYSG+R S+ C   ++   L  NI  +++ K G      +PD   +
Sbjct: 112 SSNNRKHLAIVSLLLYSGIRVSELCNLKIEDIDLNENIIYVRSGKGGKDRIAIIPDECSE 171

Query: 244 LLAMTPIGK-----ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATI 296
           +L      +     +TFFI+N K + + +      K  A +AG+ K  + H +R   AT 
Sbjct: 172 ILRSYYNDRLKYPGDTFFISNKKSRYDTSTIERLIKKLAVRAGIEKHVTPHVLRHTFATS 231

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGAD 327
               G     +    G  +V   + YT   D
Sbjct: 232 VLRNGGDIRFIQQILGHASVATTQIYTHIDD 262


>gi|301299326|ref|ZP_07205611.1| tyrosine recombinase XerD [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300853066|gb|EFK80665.1| tyrosine recombinase XerD [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 290

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 53/254 (20%), Positives = 116/254 (45%), Gaps = 28/254 (11%)

Query: 99  FDQIIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAI 155
           F + +R++    ++++  + I + ++S K+     SS ++ ++S+R  F++  +++ +  
Sbjct: 28  FLEYLRENEIPSFKQVNKEVIVNYMQSEKNNNKANSSILRSVSSLRKFFQYLAQEKIIEK 87

Query: 156 NPCLSVERPKRKTEGIRPWTKEDMQQF----KSFWSEGSQPRLAFEFLLYSGLRCSDSCR 211
           +P L ++ PK+K    +  TKE++++      +    G + R   E +  +GLR S+   
Sbjct: 88  DPMLLIDTPKKKQHLPQVLTKEEVEKLLRSPNTGQVLGLRDRAMLELMYATGLRISEIIN 147

Query: 212 AGVQHLQNNIFSIKTQKTG---TIITVE----------LPDGFMKLLAMTPIGKETFFIN 258
             ++ L   + +++T   G    I+ V           L +   KLL      K + ++ 
Sbjct: 148 LKLEDLHLTMGTLQTLGKGHKERIVPVGDEAIKWVNRYLEEARPKLLKQ----KRSNYLF 203

Query: 259 NDKQKMNATQFSIW--FKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWK 314
            +    N T+  +W   KA+  KAG+ K+   H +R   AT   + GA    +    G  
Sbjct: 204 LNFHGNNLTRQGVWKNLKAEVRKAGIQKNITPHTLRHSFATHILENGADLRIVQELLGHA 263

Query: 315 TVDQAETYTKGADR 328
            +   + YT  +++
Sbjct: 264 DISTTQIYTHLSNK 277


>gi|23505472|ref|NP_700401.1| Integrase protein [Salmonella phage ST64B]
 gi|167995270|ref|ZP_02576360.1| integrase protein [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|207857414|ref|YP_002244065.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|23379219|gb|AAL25906.1| Sb28 [Salmonella phage ST64B]
 gi|205327035|gb|EDZ13799.1| integrase protein [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|206709217|emb|CAR33550.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|261247218|emb|CBG25042.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|267994049|gb|ACY88934.1| integrase protein [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 14028S]
 gi|301158562|emb|CBW18073.1| bacteriophage integrase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|323130323|gb|ADX17753.1| Integrase protein [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
 gi|326623804|gb|EGE30149.1| Integrase protein [Salmonella enterica subsp. enterica serovar
           Dublin str. 3246]
          Length = 329

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 84/171 (49%), Gaps = 10/171 (5%)

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
           RK   T   L  ++  SA +  LA  ++  + ++   I+   GD + + I  +HIR  ++
Sbjct: 55  RKNRITFTQLWRKFLASADYADLAPRTQKDYLAHEKYILAVFGDAEAKAIKPEHIRRYMD 114

Query: 125 SR-KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER-PKRKTEGIRPWTKEDMQQF 182
           +R + +   A    +SM  +F+W+ ++ YV  NPC+ V++ PK + +  R  T E   ++
Sbjct: 115 ARGQKSRVQANHEHSSMSRVFRWSYQRGYVPGNPCVGVDKFPKPQRD--RYITDE---EY 169

Query: 183 KSFWSEGSQP-RLAFEFLLYSGLRCSDSCRAG-VQHLQNNIFSIKTQKTGT 231
           ++ ++  +   R A E       R SD  +    Q L+  IF I+  KTG 
Sbjct: 170 RAIYNNATPAVRAAMEIAYLCAARVSDVLKMNWNQILEKGIF-IQQGKTGV 219


>gi|330895934|gb|EGH28218.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           japonica str. M301072PT]
          Length = 298

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 58/245 (23%), Positives = 106/245 (43%), Gaps = 23/245 (9%)

Query: 112 RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
           R++   H+   VE+  + P S  +FL+ +R  +++ +R++ ++++P L ++ P+      
Sbjct: 53  REVILDHLAWRVEN-AYKPRSTARFLSGVRGFYRYLLREKLISVDPTLQIDMPQLGKPLP 111

Query: 172 RPWTKEDMQQFKSF--WSE--GSQPRLAFEFLLYSGLRCSD---------SCRAGVQHLQ 218
           +  ++ D++   +    SE  G + R   E L   GLR ++         + R GV  + 
Sbjct: 112 KSLSEADVEALLAAPDLSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVM 171

Query: 219 NNIFSIKTQKTG--TIITVE--LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274
                 +    G  +I+ VE  L     +LL   P   +  F +    +M    F    K
Sbjct: 172 GKGSKERLVPMGEESIVWVERYLRGARDELLGGKP--SDVLFPSTRGDQMTRQTFWHRIK 229

Query: 275 AKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
            +AT AG+ KS   H +R   AT   + GA    +    G   +   + YT  A R RL 
Sbjct: 230 HQATVAGIGKSLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARLQ 288

Query: 333 IKNSR 337
             ++R
Sbjct: 289 ELHAR 293


>gi|291286542|ref|YP_003503358.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809]
 gi|290883702|gb|ADD67402.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809]
          Length = 399

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/103 (24%), Positives = 52/103 (50%), Gaps = 3/103 (2%)

Query: 109 FDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168
           F   +I   HI+  + + + +  +   +L     +F+ AVR + ++ NPC  V++P+ +T
Sbjct: 126 FKLSEIKPSHIQQYISNSELSAKTIANYLGVFHSIFESAVRDDLLSKNPCKHVKKPRVQT 185

Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL--YSGLRCSDS 209
           E + P++ E++      W     P +   F L  Y+G+R  ++
Sbjct: 186 EKVDPFSIEEVSMILD-WMRQHHPHMTIIFALGFYTGMRVGEA 227


>gi|90961911|ref|YP_535827.1| integrase/recombinase XerD/RipX family [Lactobacillus salivarius
           UCC118]
 gi|90821105|gb|ABD99744.1| Integrase/recombinase, XerD/RipX family [Lactobacillus salivarius
           UCC118]
          Length = 297

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 53/254 (20%), Positives = 116/254 (45%), Gaps = 28/254 (11%)

Query: 99  FDQIIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAI 155
           F + +R++    ++++  + I + ++S K+     SS ++ ++S+R  F++  +++ +  
Sbjct: 35  FLEYLRENEIPSFKQVNKEVIVNYMQSEKNNNKANSSILRSVSSLRKFFQYLAQEKIIEK 94

Query: 156 NPCLSVERPKRKTEGIRPWTKEDMQQF----KSFWSEGSQPRLAFEFLLYSGLRCSDSCR 211
           +P L ++ PK+K    +  TKE++++      +    G + R   E +  +GLR S+   
Sbjct: 95  DPMLLIDTPKKKQHLPQVLTKEEVEKLLRSPNTGQVLGLRDRAMLELMYATGLRISEIIN 154

Query: 212 AGVQHLQNNIFSIKTQKTGT---IITVE----------LPDGFMKLLAMTPIGKETFFIN 258
             ++ L   + +++T   G    I+ V           L +   KLL      K + ++ 
Sbjct: 155 LKLEDLHLTMGTLQTLGKGHKERIVPVGDEAIKWVNRYLEEARPKLLKQ----KRSNYLF 210

Query: 259 NDKQKMNATQFSIW--FKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWK 314
            +    N T+  +W   KA+  KAG+ K+   H +R   AT   + GA    +    G  
Sbjct: 211 LNFHGNNLTRQGVWKNLKAEVRKAGIQKNITPHTLRHSFATHILENGADLRIVQELLGHA 270

Query: 315 TVDQAETYTKGADR 328
            +   + YT  +++
Sbjct: 271 DISTTQIYTHLSNK 284


>gi|13476600|ref|NP_108170.1| integrase [Mesorhizobium loti MAFF303099]
 gi|14027362|dbj|BAB53631.1| integrase [Mesorhizobium loti MAFF303099]
          Length = 343

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 39/185 (21%), Positives = 74/185 (40%), Gaps = 3/185 (1%)

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
            P  A + L S+  +F +AV  E +  NPC  +ER    +     W++E ++ F++    
Sbjct: 128 NPRKADKLLFSLSKVFSYAVADELIDKNPCTGIERLYNGSRRESVWSQEQIKAFRA--GA 185

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248
            +   LAFE  L++G R  D      +         +  K G  + V +      +L + 
Sbjct: 186 PAHLLLAFEMALHTGQRQGDLLSRSWKDYDGIYLQFRQSKGGKKLKVRVHSKLKAMLDVL 245

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHEL 307
              K    +N+ K+      F   +  + T+  +   + H +R    T  A  G++  ++
Sbjct: 246 DKDKMRILLNSRKRPWTKDGFKTSWGKECTRLQIEGVTFHDLRGTFITERAREGSSVEDI 305

Query: 308 MATYG 312
               G
Sbjct: 306 AKISG 310


>gi|330936913|gb|EGH41038.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           pisi str. 1704B]
          Length = 298

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 57/239 (23%), Positives = 103/239 (43%), Gaps = 23/239 (9%)

Query: 112 RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
           R++   H+   VE+  + P S  +FL+ +R  +++ +R++ ++++P L ++ P+      
Sbjct: 53  REVILDHLAWRVEN-AYKPRSTARFLSGVRGFYRYLLREKLISVDPTLQIDMPQLGKPLP 111

Query: 172 RPWTKEDMQQFKSF--WSE--GSQPRLAFEFLLYSGLRCSD---------SCRAGVQHLQ 218
           +  ++ D++   +    SE  G + R   E L   GLR ++         + R GV  + 
Sbjct: 112 KSLSEADVEALLAAPDLSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVM 171

Query: 219 NNIFSIKTQKTG--TIITVE--LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274
                 +    G  +I+ VE  L     +LL   P   +  F +    +M    F    K
Sbjct: 172 GKGSKERLVPMGEESIVWVERYLRGARDELLGGKP--SDVLFPSTRGDQMTRQTFWHRIK 229

Query: 275 AKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            +AT AG+ KS   H +R   AT   + GA    +    G   +   + YT  A R RL
Sbjct: 230 HQATVAGIGKSLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARL 287


>gi|306845920|ref|ZP_07478487.1| integrase family protein [Brucella sp. BO1]
 gi|306273555|gb|EFM55400.1| integrase family protein [Brucella sp. BO1]
          Length = 305

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 47/206 (22%), Positives = 81/206 (39%), Gaps = 11/206 (5%)

Query: 45  PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR 104
           PA+M      T  R+   +   KP TL WL+SEY  SA +  L+VN++  +E     I  
Sbjct: 8   PAFMHEYLRLTRDRKIAEA---KPKTLAWLVSEYLASADYQKLSVNTKRDYERMTGVISI 64

Query: 105 KSGDFDYRKITTKHIRSGV----ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
           K G    + +  +  R       +  + TP SA   +T +  +  WA  +E +  NP   
Sbjct: 65  KFGTLPVQALEARGARRLFMDWRDEMRATPRSADLHITVLARIMSWAKNREIIIRNPLEK 124

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEG-SQPRLAFEFLLYSGLRCSDSCRAGVQHLQN 219
             +  +       W      Q   F +E  +      +  L++  R  D          +
Sbjct: 125 AGKLHKSNRKDIIWMP---SQLSKFLNEAPAHLSDVVKMALWTMQRKGDVLGMPTIAYSD 181

Query: 220 NIFSIKTQKTGTIITVELPDGFMKLL 245
           ++  I   KTG  + ++  D  + +L
Sbjct: 182 DLLWITQGKTGARVRIKPADEILPIL 207


>gi|224025282|ref|ZP_03643648.1| hypothetical protein BACCOPRO_02021 [Bacteroides coprophilus DSM
           18228]
 gi|224018518|gb|EEF76516.1| hypothetical protein BACCOPRO_02021 [Bacteroides coprophilus DSM
           18228]
          Length = 314

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 53/217 (24%), Positives = 90/217 (41%), Gaps = 18/217 (8%)

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS---- 187
           S  + L+ +R  +++ + ++Y+  +PC  +E P+         T E++ +          
Sbjct: 74  SQARILSGVRAFYRFLLLEDYIQQDPCELLESPQTGRHLPDVLTVEEIDRLIGSIDRSSR 133

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---IITV------ELP 238
           EG + R   E L   GLR S+ C   +  L  N   IK +  G+   ++ +      EL 
Sbjct: 134 EGQRNRAILETLYSCGLRVSELCNLKLSDLYLNEGFIKVEGKGSKQRLVPISPKAISELN 193

Query: 239 DGF-MKLLAMTPIGKETF-FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSA 294
           + F  +   +   G E F FI+   + ++        K  A  AG+ K  S H  R   A
Sbjct: 194 NYFPNRNAGLIKPGYEDFVFISRFGKNISRIMVFHIIKELAGMAGIKKTISPHTFRHSFA 253

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           T   + GA    +    G +++   E YT   DR RL
Sbjct: 254 THLLEGGANLRAIQCMLGHESIGTTEIYTH-IDRNRL 289


>gi|300214635|gb|ADJ79051.1| Integrase/recombinase, XerD/RipX family [Lactobacillus salivarius
           CECT 5713]
          Length = 297

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 53/254 (20%), Positives = 116/254 (45%), Gaps = 28/254 (11%)

Query: 99  FDQIIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAI 155
           F + +R++    ++++  + I + ++S K+     SS ++ ++S+R  F++  +++ +  
Sbjct: 35  FLEYLRENEIPSFKQVNKEVIVNYMQSEKNNNKANSSILRSVSSLRKFFQYLAQEKIIEK 94

Query: 156 NPCLSVERPKRKTEGIRPWTKEDMQQF----KSFWSEGSQPRLAFEFLLYSGLRCSDSCR 211
           +P L ++ PK+K    +  TKE++++      +    G + R   E +  +GLR S+   
Sbjct: 95  DPMLLIDTPKKKQHLPQVLTKEEVEKLLRSPNTGQVLGLRDRAMLELMYATGLRISEIIN 154

Query: 212 AGVQHLQNNIFSIKTQKTG---TIITVE----------LPDGFMKLLAMTPIGKETFFIN 258
             ++ L   + +++T   G    I+ V           L +   KLL      K + ++ 
Sbjct: 155 LKLEDLHLTMGTLQTLGKGHKERIVPVGDEAIKWVNRYLEEARPKLLKQ----KRSNYLF 210

Query: 259 NDKQKMNATQFSIW--FKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWK 314
            +    N T+  +W   KA+  KAG+ K+   H +R   AT   + GA    +    G  
Sbjct: 211 LNFHGNNLTRQGVWKNLKAEVRKAGIQKNITPHTLRHSFATHILENGADLRIVQELLGHA 270

Query: 315 TVDQAETYTKGADR 328
            +   + YT  +++
Sbjct: 271 DISTTQIYTHLSNK 284


>gi|134093808|ref|YP_001098883.1| putative phage integrase [Herminiimonas arsenicoxydans]
 gi|133737711|emb|CAL60756.1| putative phage integrase [Herminiimonas arsenicoxydans]
          Length = 418

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 49/201 (24%), Positives = 82/201 (40%), Gaps = 15/201 (7%)

Query: 48  MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG 107
           +  + G+ P  E   +   +  T++ LI++YRK   +  LA N+++++     +I     
Sbjct: 79  IGIIDGTNPADEVRKAKANRDWTMRELIADYRKLV-FSDLAKNTQLTYGRNLKRIENGMA 137

Query: 108 DFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP--- 164
               + +  + I + +E  K   S        +R LFK A  ++ +  NPC  ++     
Sbjct: 138 AMSVQTVGPEDIIAQLERVKAGWSELFTLWMVLRGLFKHAAGKKIIFANPCAGIQLEAVI 197

Query: 165 -KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF- 222
            KR     R    ED           S   LA   LL +G+R S+   A    L+ N+F 
Sbjct: 198 GKRPAIRRRLMLSEDELTTVMNADMNSANLLAIHILLGTGVRSSELFTA----LKENVFL 253

Query: 223 -----SIKTQKTGTIITVELP 238
                 I   KTG  I + LP
Sbjct: 254 DEGRWHIPASKTGPAIDIPLP 274


>gi|116513910|ref|YP_812816.1| integrase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
 gi|116093225|gb|ABJ58378.1| tyrosine recombinase XerD subunit [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|325125576|gb|ADY84906.1| Integrase-recombinase [Lactobacillus delbrueckii subsp. bulgaricus
           2038]
          Length = 298

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 48/214 (22%), Positives = 93/214 (43%), Gaps = 24/214 (11%)

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFW 186
           SS  + ++++   ++W VRQ+ +A++P   ++ PKR+       T+ +    ++Q     
Sbjct: 70  SSISRLVSTLSRFYQWLVRQQLIALDPMSQIDAPKREKRMPLALTEAEVGKLLEQPDLTT 129

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---IITVE------- 236
             G + R+  E L  +G+R S++    +  +  N+  IK    G+   +I V        
Sbjct: 130 DLGIRDRVLLELLYATGMRVSEAVNLQLADVHANLQLIKVLGKGSKERLIPVSALALDWI 189

Query: 237 ---LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSA--HGV 289
              LP    +LL     GK + ++  + +    T+ ++W K K    +AG+ K    H +
Sbjct: 190 KRYLPVRDQQLLKR---GKSSDYLFLNSRGGQLTRQAVWQKIKKYCQQAGIAKDVTPHTL 246

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           R   AT   + GA    +    G   +   + YT
Sbjct: 247 RHSFATHLLEHGADLRVVQEILGHTDISTTQIYT 280


>gi|330959145|gb|EGH59405.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 298

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 55/239 (23%), Positives = 101/239 (42%), Gaps = 23/239 (9%)

Query: 112 RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
           R++   H+   V++  + P S  +FL+  R  +++ +R++ +AI+P L ++ P+      
Sbjct: 53  REVILDHLAWRVDN-AYKPRSTARFLSGARGFYRYLLREKLIAIDPTLQIDMPQLGKPLP 111

Query: 172 RPWTKEDMQQFKSF--WSE--GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227
           +  ++ D++   +    SE  G + R   E L   GLR ++     ++ +      ++  
Sbjct: 112 KSLSEADVEALLAAPDLSEPIGQRDRAVLEVLYACGLRVTELISLTLEQVNLRQGVLRVM 171

Query: 228 KTGT-----------IITVE--LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274
             G+           I+ VE  L     +LL   P   +  F +    +M    F    K
Sbjct: 172 GKGSKERLVPMGEEAIVWVERYLRGARDELLGGKP--SDVLFPSTRGDQMTRQTFWHRIK 229

Query: 275 AKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            +AT AG+ KS   H +R   AT   + GA    +    G   +   + YT  A R RL
Sbjct: 230 HQATVAGIGKSLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARL 287


>gi|330997435|ref|ZP_08321286.1| tyrosine recombinase XerD [Paraprevotella xylaniphila YIT 11841]
 gi|329570809|gb|EGG52525.1| tyrosine recombinase XerD [Paraprevotella xylaniphila YIT 11841]
          Length = 317

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 54/222 (24%), Positives = 95/222 (42%), Gaps = 21/222 (9%)

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK--RKTEGIRPWTKED--MQQFKS 184
           +P S  + L+ +R  +++   ++ +  +P   +E PK  R+   +    + D  ++    
Sbjct: 80  SPRSMARILSGIRSFYRFLYVEKEIEQDPTELLESPKIGRRLPEVLTVAEIDAMIEGIDL 139

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---IITV------ 235
              EG + R   E L   GLR S+ C   +  L      I+ +  G    ++ +      
Sbjct: 140 SQPEGQRNRAILEMLYSCGLRVSELCGLRISDLFLEEGFIRVKGKGEKERLVPISGRAVH 199

Query: 236 ELPDGFM--KLLAMTPIGKETFFINNDKQKMNATQFSI--WFKAKATKAGVNK--SAHGV 289
           EL + F+   L+ + P G E F   + ++    ++ +I  W K  A  AG+ K  S H  
Sbjct: 200 ELENWFLCRNLIRIKP-GHEDFVFLSLRRGTALSRITIFYWVKELAVAAGIQKTISPHTF 258

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           R   AT   + GA    + A  G +++   E YT   DR RL
Sbjct: 259 RHSFATHLLEGGANLRVIQAMLGHESISTTEIYTH-IDRSRL 299


>gi|66044534|ref|YP_234375.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           syringae B728a]
 gi|63255241|gb|AAY36337.1| Phage integrase:Phage integrase, N-terminal SAM-like [Pseudomonas
           syringae pv. syringae B728a]
          Length = 298

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 58/245 (23%), Positives = 105/245 (42%), Gaps = 23/245 (9%)

Query: 112 RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
           R++   H+   V++  + P S  +FL+  R  +++ +R++ +A++P L ++ P+      
Sbjct: 53  REVILDHLAWRVDN-AYKPRSTARFLSGARGFYRYLLREKLIAVDPTLQIDMPQLGKPLP 111

Query: 172 RPWTKEDMQQFKSF--WSE--GSQPRLAFEFLLYSGLRCSD---------SCRAGVQHLQ 218
           +  ++ D++   +    SE  G + R   E L   GLR ++         + R GV  + 
Sbjct: 112 KSLSEADVEALLAAPDLSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVM 171

Query: 219 NNIFSIKTQKTG--TIITVE--LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274
                 +    G  +I+ VE  L     +LL   P   +  F +    +M    F    K
Sbjct: 172 GKGSKERLVPMGEESIVWVERYLRGARDELLGGKP--SDVLFPSTRGDQMTRQTFWHRIK 229

Query: 275 AKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
            +AT AG+ KS   H +R   AT   + GA    +    G   +   + YT  A R RL 
Sbjct: 230 HQATVAGIGKSLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARLQ 288

Query: 333 IKNSR 337
             ++R
Sbjct: 289 EMHAR 293


>gi|154488853|ref|ZP_02029702.1| hypothetical protein BIFADO_02161 [Bifidobacterium adolescentis
           L2-32]
 gi|154082990|gb|EDN82035.1| hypothetical protein BIFADO_02161 [Bifidobacterium adolescentis
           L2-32]
          Length = 308

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 57/272 (20%), Positives = 107/272 (39%), Gaps = 36/272 (13%)

Query: 87  LAVNSRISFESYFDQII---RKSGDFDYRKITTKHIR--SGVESRKHTPSSAIQFLTSMR 141
           L+ N+R ++ S  ++ +   RK G  D  ++T + +R      S+ H  SS  +   ++R
Sbjct: 20  LSANTRRAYRSDVEECLVALRKQGCVDLNEVTIEDLRLWMAKSSKNHARSSMARKTVAVR 79

Query: 142 VLFKWAVRQEYVAINPCLSVERPK---------RKTEGIRPWTKEDMQQFKSFWSEGSQP 192
             F WA   +  + NP  S++ PK          +T+  +   + D    ++   E +  
Sbjct: 80  GFFAWAYDHDMASANPAASLQTPKIPDTLPAVLNETQAQQLMDRVDEDGMEARSQEPNMK 139

Query: 193 RLA--------FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
           + A         E L  +G+R ++     V  +     ++K    G    V +P G    
Sbjct: 140 KQAIALRDAAMLELLYATGMRVAELVGLDVADVTFGNRTVKVTGKGDKQRV-MPFGAPAD 198

Query: 245 LAM------------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRK 291
            A+              +  + FF+ +   ++           +A KAGV + S H +R 
Sbjct: 199 KALRDWLEHGRPVLCGDMSDDAFFLGSQGGRIGQRMVRKVVHDRARKAGVPDISPHALRH 258

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYT 323
            +AT   D GA   E+    G  ++   + YT
Sbjct: 259 SAATHMLDGGADLREVQEMLGHSSLKTTQRYT 290


>gi|299142044|ref|ZP_07035178.1| tyrosine recombinase XerD [Prevotella oris C735]
 gi|298576506|gb|EFI48378.1| tyrosine recombinase XerD [Prevotella oris C735]
          Length = 307

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 52/229 (22%), Positives = 83/229 (36%), Gaps = 53/229 (23%)

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK--RKTEGIRPWTKEDM--QQFKSF 185
           P S  + L+ +R  +++ +   Y+  +P   +E P   +    +    + DM  Q     
Sbjct: 73  PRSQSRILSGIRSFYRFLLLDGYIETDPTELLESPALGQHLPEVLSTAEVDMLEQSIDLS 132

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
             EG + R   E L   GLR S+     +  L                   L DGF+++L
Sbjct: 133 KPEGQRNRAIIEVLFSCGLRVSELVNLKLSQLY------------------LDDGFIRVL 174

Query: 246 A------MTPI----------------------GKETF-FINNDKQKMNATQFSIWFKAK 276
                  + PI                      G+E F F+N     +  T   I  K +
Sbjct: 175 GKGSKERLVPISPRAIKELQLWFTDRVHLNIKPGEEDFVFLNRRGHHLTRTMILIMIKRQ 234

Query: 277 ATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           A +AG+ K  S H +R   AT     GA    + A  G +++   E YT
Sbjct: 235 AEEAGIKKTISPHTLRHSFATALLQGGADLRAIQAMLGHESIGTTEIYT 283


>gi|319653703|ref|ZP_08007800.1| hypothetical protein HMPREF1013_04417 [Bacillus sp. 2_A_57_CT2]
 gi|317394546|gb|EFV75287.1| hypothetical protein HMPREF1013_04417 [Bacillus sp. 2_A_57_CT2]
          Length = 178

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 59/113 (52%), Gaps = 9/113 (7%)

Query: 102 IIRKSGDFDYRKITTKHIR-----SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAIN 156
           +I+  GD     ITT+ I+        E +  +    I+F+ S   LFKWA  ++YV+IN
Sbjct: 34  LIKYFGDIKITDITTESIKLYLGEVAAELKASSLCHRIRFIKS---LFKWAQEEKYVSIN 90

Query: 157 PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDS 209
           P  +++ PK ++   +  T+E+++ F+       +  L FEF+  +G R  ++
Sbjct: 91  PVSTIKEPKPESTIPKFLTEEEIELFREACKTTFEKAL-FEFMYSTGCRIGEA 142


>gi|330950740|gb|EGH51000.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae Cit
           7]
          Length = 298

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 57/239 (23%), Positives = 103/239 (43%), Gaps = 23/239 (9%)

Query: 112 RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
           R++   H+   VE+  + P S  +FL+  R  +++ +R++ ++++P L ++ P+      
Sbjct: 53  REVILDHLAWRVEN-AYKPRSTARFLSGARGFYRYLLREKLISVDPTLQIDMPQLGKPLP 111

Query: 172 RPWTKEDMQQFKSF--WSE--GSQPRLAFEFLLYSGLRCSD---------SCRAGVQHLQ 218
           +  ++ D++   +    SE  G + R   E L   GLR ++         + R GV  + 
Sbjct: 112 KSLSEADVEALLAAPDLSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVM 171

Query: 219 NNIFSIKTQKTG--TIITVE--LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274
                 +    G  +I+ VE  L     +LL   P   +  F ++   +M    F    K
Sbjct: 172 GKGSKERLVPMGEESIVWVERYLRGARDELLGGKP--SDVLFPSSRGDQMTRQTFWHRIK 229

Query: 275 AKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            +AT AG+ KS   H +R   AT   + GA    +    G   +   + YT  A R RL
Sbjct: 230 HQATVAGIGKSLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARL 287


>gi|198245719|ref|YP_002216060.1| integrase protein [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|197940235|gb|ACH77568.1| integrase protein [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
          Length = 329

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 84/171 (49%), Gaps = 10/171 (5%)

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
           RK   T   L  ++  SA +  LA  ++  + ++   I+   GD + + I  +HIR  ++
Sbjct: 55  RKNRITFIQLWRKFLASADYADLAPRTQKDYLAHEKYILAVFGDAEAKAIKPEHIRRYMD 114

Query: 125 SR-KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER-PKRKTEGIRPWTKEDMQQF 182
           +R + +   A    +SM  +F+W+ ++ YV  NPC+ V++ PK + +  R  T E   ++
Sbjct: 115 ARGQKSRVQANHEHSSMSRVFRWSYQRGYVPGNPCVGVDKFPKPQRD--RYITDE---EY 169

Query: 183 KSFWSEGSQP-RLAFEFLLYSGLRCSDSCRAG-VQHLQNNIFSIKTQKTGT 231
           ++ ++  +   R A E       R SD  +    Q L+  IF I+  KTG 
Sbjct: 170 RAIYNNATPAVRAAMEIAYLCAARVSDVLKMNWNQILEKGIF-IQQGKTGV 219


>gi|303257603|ref|ZP_07343615.1| putative integrase/recombinase [Burkholderiales bacterium 1_1_47]
 gi|302859573|gb|EFL82652.1| putative integrase/recombinase [Burkholderiales bacterium 1_1_47]
          Length = 358

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 32/138 (23%), Positives = 62/138 (44%), Gaps = 19/138 (13%)

Query: 114 ITTKHIRSGVESRKH----------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163
           IT K I + +E R            +PS+  + LT +  +F++A++ E   +NPC  VE+
Sbjct: 99  ITKKTIENYIERRLQERAKNRDSNISPSTVNRELTILSDVFQYAIKNELTDVNPCRGVEK 158

Query: 164 PKRKTEGIRPWTKEDMQQ--FKSFWSEGSQPR-------LAFEFLLYSGLRCSDSCRAGV 214
           P+      R  + ED+++      W   + P+        AF F   +G+R  +  +   
Sbjct: 159 PREPEHRERVASGEDIEKLLLACGWDGHTVPKNKMQLAVAAFLFSCQTGMRAGELLKIEY 218

Query: 215 QHLQNNIFSIKTQKTGTI 232
             + +N+  +  + T T+
Sbjct: 219 SWIDDNVLHVPAEATKTL 236


>gi|282889659|ref|ZP_06298199.1| hypothetical protein pah_c003o054 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281500486|gb|EFB42765.1| hypothetical protein pah_c003o054 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 304

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 54/236 (22%), Positives = 102/236 (43%), Gaps = 27/236 (11%)

Query: 111 YRKITTKHIRS---GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK-- 165
           Y+ +  +H+ +    ++S  +  S+  + L S++V F +  R+  +  NP + +E PK  
Sbjct: 56  YQAVEPEHLIAFLGSLKSADYATSTISRTLVSLKVFFGFLKREGTIEQNPSMLLESPKLW 115

Query: 166 RKTEGIRPWTKED--MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223
           +    I    + D  M Q  +  ++G + R  FE L  SGLR S+ C   +  + +    
Sbjct: 116 QLLPDILDIEEVDLLMNQPDNKTAKGVRDRAIFELLYGSGLRVSEVCTLTIYSIDDQYIR 175

Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPI-----------GKETFFINNDKQKMNATQFSIW 272
           +  + +   I   +P G   L+A+               +++ F+    + M+  + SIW
Sbjct: 176 VYGKGSKERI---VPIGSQALMAVDQYLSLYRWQWDSEKEQSLFVTLRGKSMD--RISIW 230

Query: 273 --FKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              K  A +AG+ K  S H +R   AT   + GA    +    G   +   + YT+
Sbjct: 231 RSIKEYAQQAGITKTISPHTLRHSFATHLLNNGADLRVIQDLLGHANISSTDRYTR 286


>gi|221369617|ref|YP_002520713.1| Phage integrase family protein [Rhodobacter sphaeroides KD131]
 gi|221162669|gb|ACM03640.1| Phage integrase family protein [Rhodobacter sphaeroides KD131]
          Length = 350

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 66/293 (22%), Positives = 108/293 (36%), Gaps = 36/293 (12%)

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121
           + P     TL+ LI+ Y+K+  +  LA  +R  +  +  QI    GD   + +    +R 
Sbjct: 40  DRPVHHDGTLQALITAYQKTPAFTDLAEATRKGYIRHIRQIEADFGDMPVQALADPRVRG 99

Query: 122 GV------ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
                    ++K   S+   F    R+L  WA  +  + +NPC   E+P R   G R   
Sbjct: 100 EFLDWRDRLAQKSKRSADYAFSVLARIL-SWAHDRRKIPVNPC---EKPGRLYAGSRA-- 153

Query: 176 KEDMQQFKSFWSEGSQP----------RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225
                   S W+E              RL F   +++G R +D  +            ++
Sbjct: 154 -------DSIWTEAQIAAFLAAAPRPVRLPFLLAIWTGQRQADILQLSWTAYDGKAIRLR 206

Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKETFFI--NNDKQKMNATQFSIWFKAKATKAGVN 283
             KTG  + + +       +      + T  I   +  Q   +  F   F      AG+ 
Sbjct: 207 QSKTGRHMLIPVAQPLRDAMEEARARRRTLTICETSRGQPWTSDGFKTSFGKAQASAGIE 266

Query: 284 K-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK---GADRIRLG 332
             + H +R  + T  A AG +  E+ A  G    D     +K   G DR RLG
Sbjct: 267 GVTFHDLRGTAVTFLALAGCSVPEIAALTGHSLKDAEGILSKHYLGRDR-RLG 318


>gi|237800088|ref|ZP_04588549.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331022943|gb|EGI03000.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 298

 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 54/239 (22%), Positives = 101/239 (42%), Gaps = 23/239 (9%)

Query: 112 RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
           R++   H+   VE+  + P S  +FL+  R  +++ +R++ +A++P L ++ P+      
Sbjct: 53  REVILDHLAWRVEN-AYKPRSTARFLSGARGFYRYLLREKLIAVDPTLQIDMPQLGKPLP 111

Query: 172 RPWTKEDMQQFKSF--WSE--GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227
           +  ++ D++   +    SE  G + R   E L   GLR ++     ++ +      ++  
Sbjct: 112 KSLSEADVEALLAAPDLSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVM 171

Query: 228 KTGT-----------IITVE--LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274
             G+           I+ VE  +     +LL   P   +  F +    +M    F    K
Sbjct: 172 GKGSKERLVPMGEEAIVWVERYMRGARDELLGGKP--SDVLFPSTRGDQMTRQTFWHRIK 229

Query: 275 AKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            +AT AG+ KS   H +R   AT   + GA    +    G   +   + YT  A R RL
Sbjct: 230 HQATVAGIGKSLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARL 287


>gi|289675164|ref|ZP_06496054.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           syringae FF5]
          Length = 298

 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 58/245 (23%), Positives = 105/245 (42%), Gaps = 23/245 (9%)

Query: 112 RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
           R++   H+   VE+  + P S  +FL+  R  +++ +R++ ++++P L ++ P+      
Sbjct: 53  REVILDHLAWRVEN-AYKPRSTARFLSGARGFYRYLLREKLISVDPTLQIDMPQLGKPLP 111

Query: 172 RPWTKEDMQQFKSF--WSE--GSQPRLAFEFLLYSGLRCSD---------SCRAGVQHLQ 218
           +  ++ D++   +    SE  G + R   E L   GLR ++         + R GV  + 
Sbjct: 112 KSLSEADVEALLAAPDLSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVM 171

Query: 219 NNIFSIKTQKTG--TIITVE--LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274
                 +    G  +I+ VE  L     +LL   P   +  F +    +M    F    K
Sbjct: 172 GKGSKERLVPMGEESIVWVERYLRGARDELLGGKP--SDVLFPSTRGDQMTRQTFWHRIK 229

Query: 275 AKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
            +AT AG+ KS   H +R   AT   + GA    +    G   +   + YT  A R RL 
Sbjct: 230 HQATVAGIGKSLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARLQ 288

Query: 333 IKNSR 337
             ++R
Sbjct: 289 ELHAR 293


>gi|307269737|ref|ZP_07551067.1| phage integrase, SAM-like domain protein [Enterococcus faecalis
           TX4248]
 gi|306513847|gb|EFM82449.1| phage integrase, SAM-like domain protein [Enterococcus faecalis
           TX4248]
          Length = 301

 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 57/269 (21%), Positives = 108/269 (40%), Gaps = 49/269 (18%)

Query: 105 KSGDFDYRKITTKHIRSGV--ESRKHTPSSAIQFLTS-MRVLFKWAVRQEYVAINPCLSV 161
           KS + +  ++  KHI+S +     K   +S I    S ++ LF + + ++Y+  NP + +
Sbjct: 39  KSINVEPLQLEKKHIKSWIIDMQEKEMQASTINVSVSRLKKLFDYMLIEKYIDYNPFVDI 98

Query: 162 ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA------FEFLLYSGLRCSDSCRAGVQ 215
           ER K + + I P    +++Q  +   +     +A         ++  GLR S+ C    +
Sbjct: 99  ERLKEQRKVIYPLNDYEIKQMLTVAKKHPYKHIAQRNVVILMLMIECGLRISEVCEIRDE 158

Query: 216 HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE-------------------TFF 256
            + NN   I+  K          D   + +A++PI K+                    F 
Sbjct: 159 DIMNNQIIIRKSKNN-------KD---RAVAVSPILKKEIIKYQRIKKRKYGLLEGNLFI 208

Query: 257 INNDKQKMNATQFSIWFKAKATKAGVNK------SAHGVRKFSATISADAGATAHELMAT 310
           ++N  +K+N    SIW   +  K  ++       S H +R   A++    G   + L   
Sbjct: 209 VSNLGKKLNEK--SIWQIMQEIKKQIDIRDCVRFSGHTLRHTYASMQLRNGLDIYTLSLN 266

Query: 311 YGWKTVDQAETYTK---GADRIRLGIKNS 336
            G  +++  + Y +     D I   IK S
Sbjct: 267 MGHSSIEMTQRYVQTLNSEDFIEKSIKTS 295


>gi|229592394|ref|YP_002874513.1| site-specific tyrosine recombinase XerD [Pseudomonas fluorescens
           SBW25]
 gi|229364260|emb|CAY51975.1| integrase/recombinase [Pseudomonas fluorescens SBW25]
          Length = 298

 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 55/239 (23%), Positives = 102/239 (42%), Gaps = 23/239 (9%)

Query: 112 RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
           R++   H+   +E + + P S  +FL+ +R  +++ +R++ +A++P L VE P+      
Sbjct: 53  RELILDHLAWRLE-QNYKPRSTARFLSGVRGFYRYLLREKLIALDPTLQVEMPQLGRPLP 111

Query: 172 RPWTKEDMQQFKSF--WSE--GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227
           +  ++ D+    +    SE  G + R   E L   GLR ++     ++ +      ++  
Sbjct: 112 KSLSEADVDALLAAPDLSEAIGQRDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVM 171

Query: 228 KTGT-----------IITVE--LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274
             G+           I+ VE  + D   +LL   P   +  F +   ++M    F    K
Sbjct: 172 GKGSKERLVPMGEEAIVWVERYMRDARGELLGGRP--SDVLFPSLRGEQMTRQTFWHRIK 229

Query: 275 AKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            +A  AG+ K  S H +R   AT   + GA    +    G   +   + YT  A R RL
Sbjct: 230 HQAKVAGIGKALSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARL 287


>gi|167032086|ref|YP_001667317.1| site-specific tyrosine recombinase XerD [Pseudomonas putida GB-1]
 gi|166858574|gb|ABY96981.1| tyrosine recombinase XerD [Pseudomonas putida GB-1]
          Length = 298

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 52/216 (24%), Positives = 86/216 (39%), Gaps = 21/216 (9%)

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---- 185
           P S  +FL+ +R  F++ +R+  VAI+P L V+ P+      +  ++ D++         
Sbjct: 70  PRSTARFLSGLRGFFRYLLRERLVAIDPTLQVDMPQLGKPLPKSLSEADVEALLQAPDLG 129

Query: 186 WSEGSQPRLAFEFLLYSGLRCSD---------SCRAGVQHLQNNIFSIKTQKTGTIITVE 236
            + G + R   E L   GLR ++         + R GV  +       +    G    V 
Sbjct: 130 EAIGQRDRAMLEVLYACGLRVTELVSLTLDQVNLRQGVLRVMGKGSKERLVPMGEEAVVW 189

Query: 237 LP----DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290
           L     DG  +LL   P   +  F +   ++M    F    K  A  AG++K  S H +R
Sbjct: 190 LERYQRDGRAELLNGRP--SDVLFPSLRGEQMTRQTFWHRIKHHARVAGIDKPLSPHTLR 247

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
              AT   + GA    +    G   +   + YT  A
Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA 283


>gi|28871200|ref|NP_793819.1| site-specific recombinase, phage integrase family [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|28854450|gb|AAO57514.1| site-specific recombinase, phage integrase family [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 325

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 45/208 (21%), Positives = 88/208 (42%), Gaps = 12/208 (5%)

Query: 108 DFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167
           +F+ R++  +H+ +       TP+ A + ++ +R++F +A+ ++ V  NPC  +   +R 
Sbjct: 91  EFEPRQVLPRHVAALKLHMADTPNMANRVISFLRMVFAYALERQIVDSNPCTGI---RRH 147

Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQ-PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226
            E  R     D  +F +  +  S+   + +E    +G R SD     +  + +   + + 
Sbjct: 148 AEKKRDRYISD-AEFAAICAASSEYMSVIWEMCFLTGQRISDVLNIKLSDISDVGIAFEQ 206

Query: 227 QKTGTIITVELPDGFMKLLAMTPI------GKETFFINNDKQKMNATQFSIWFKAKATKA 280
           QKTG  + V +      LL           G   F   +  + ++     + F+A    A
Sbjct: 207 QKTGAKLIVAMSPDLKALLDRVHALPRKVRGATLFCARSGGKPVSYDTCKMGFRAACKAA 266

Query: 281 GV-NKSAHGVRKFSATISADAGATAHEL 307
           GV   + H +R  S T +   G  A  L
Sbjct: 267 GVKGATIHDLRAKSLTDTDRQGNNAQML 294


>gi|206890528|ref|YP_002247908.1| tyrosine recombinase XerD [Thermodesulfovibrio yellowstonii DSM
           11347]
 gi|206742466|gb|ACI21523.1| tyrosine recombinase XerD [Thermodesulfovibrio yellowstonii DSM
           11347]
          Length = 294

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 47/224 (20%), Positives = 94/224 (41%), Gaps = 15/224 (6%)

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
            ++ + ++ +S  + L+S++  F++ +    +  +P   ++ PK      +    +++++
Sbjct: 60  NLKEKAYSSTSIARILSSLKQFFRFMIFDSIINHDPTEGLKSPKLWLRLPKALEIDEVKR 119

Query: 182 FKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---IITV 235
             S   E     +     E +  SGLR S+  R  +  +      I+ +  G    ++ +
Sbjct: 120 LLSVMLESKYYLRDIAMLELMYASGLRVSELVRLKLSDINFEAGFIRVKGKGDKERVVPI 179

Query: 236 ------ELPDGFMKL--LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAH 287
                 ++ +  +KL  + +     E  F+NN  Q M   +F    KA    AGVN + H
Sbjct: 180 AQRSIDKIKNYLVKLRPVLLKKKASEYVFLNNRGQPMTRQRFWQNIKAIGRIAGVNVTPH 239

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330
            +R   AT   + GA    L    G   +   + YTK   DR+R
Sbjct: 240 MIRHSFATHLLEGGADLRSLQKMLGHSDISTTQIYTKVSMDRLR 283


>gi|330975463|gb|EGH75529.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           aptata str. DSM 50252]
          Length = 298

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 57/239 (23%), Positives = 102/239 (42%), Gaps = 23/239 (9%)

Query: 112 RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
           R++   H+   VE+  + P S  +FL+  R  +++ +R++ ++++P L ++ P+      
Sbjct: 53  REVILDHLAWRVEN-AYKPRSTARFLSGARGFYRYLLREKLISVDPTLQIDMPQLGKPLP 111

Query: 172 RPWTKEDMQQFKSF--WSE--GSQPRLAFEFLLYSGLRCSD---------SCRAGVQHLQ 218
           +  ++ D++   +    SE  G + R   E L   GLR ++         + R GV  + 
Sbjct: 112 KSLSEADVEALLAAPDLSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVM 171

Query: 219 NNIFSIKTQKTG--TIITVE--LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274
                 +    G  +I+ VE  L     +LL   P   +  F +    +M    F    K
Sbjct: 172 GKGSKERLVPMGEESIVWVERYLRGARDELLGGKP--SDVLFPSTRGDQMTRQTFWHRIK 229

Query: 275 AKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            +AT AG+ KS   H +R   AT   + GA    +    G   +   + YT  A R RL
Sbjct: 230 HQATVAGIGKSLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARL 287


>gi|297620964|ref|YP_003709101.1| Tyrosine recombinase XerD [Waddlia chondrophila WSU 86-1044]
 gi|297376265|gb|ADI38095.1| Tyrosine recombinase XerD [Waddlia chondrophila WSU 86-1044]
          Length = 292

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 53/217 (24%), Positives = 88/217 (40%), Gaps = 14/217 (6%)

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
           S ++SR+   S+  + L +++V F++  R+  V  N  L ++ PK         T E+M+
Sbjct: 58  SYLKSRQLAVSTISRHLIAIKVFFRFLKREGVVENNVSLYLQSPKGWQIIPDVLTMEEME 117

Query: 181 ----QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI--KTQKTGTI-I 233
               Q     SEG + R   E L   GLR S+ C+  ++ L+     +  K +K   + +
Sbjct: 118 ILLNQPDPETSEGVRDRAILELLYACGLRVSELCQMKIEDLEEETVRVFGKGRKERIVPL 177

Query: 234 TVELPDGFMKLLAMTPIGKET-----FFINNDKQKMNATQFSIWFKAKATKAGVNKSA-- 286
                    + LA     K        F+N   + MN        K    +AG+ KS   
Sbjct: 178 GSHASQAINRYLAKRADCKSIDEAGYLFVNKRGKPMNRVLIWKMIKEYGAQAGITKSLSP 237

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           H +R   AT   D GA    +    G  ++   + YT
Sbjct: 238 HTMRHSFATHLLDNGAELRVIQEMLGHASISSTDRYT 274


>gi|57234468|ref|YP_181457.1| tyrosine recombinase XerC [Dehalococcoides ethenogenes 195]
 gi|57224916|gb|AAW39973.1| tyrosine recombinase XerC [Dehalococcoides ethenogenes 195]
          Length = 307

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 61/272 (22%), Positives = 111/272 (40%), Gaps = 22/272 (8%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY--RKITTKHIRSGVESRKH 128
           L++L  E   SA+         I F +Y   I +K   FD   R I   ++ S +E +  
Sbjct: 9   LEYLTVEKNVSAYTLRNYRTDLIGFVNYL--IEKKVSSFDKVDRYILRDYMSSLIE-KGI 65

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KS 184
              S  + L+++R  +++ +R+  +  NP L+   P+         T  ++ +      S
Sbjct: 66  VKGSIARKLSAVRSFYRYLMREGLIQKNPTLNASSPRLDKRLPEFLTTAEVNKLLRIPDS 125

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---IITVELP--- 238
              +G + +   E L  SGLR S+  +  +++L  +   I+    G+   I+ + LP   
Sbjct: 126 STPQGLRDKAFMELLYASGLRVSELVKLDIENLDLHSHQIRVWGKGSKERIVLMGLPAIQ 185

Query: 239 --DGFMKLLAMTPIGKET---FFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRK 291
               ++ L      GK      F+N +  +++A  F       A +AG+ K    H +R 
Sbjct: 186 SIQTYLNLGRPLLKGKRNTPALFLNPNGGRLSARSFQERLDKLAHQAGIEKHVHPHMLRH 245

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYT 323
             AT   D GA    +    G   +   + YT
Sbjct: 246 TFATHLLDGGADLRVVQELLGHSNLSTTQIYT 277


>gi|330985052|gb|EGH83155.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 298

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 54/239 (22%), Positives = 101/239 (42%), Gaps = 23/239 (9%)

Query: 112 RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
           R++   H+   VE+  + P S  +FL+  R  +++ +R++ ++++P L ++ P+      
Sbjct: 53  REVILDHLAWRVEN-AYKPRSTARFLSGARGFYRYLLREKLISVDPTLQIDMPQLGKPLP 111

Query: 172 RPWTKEDMQQFKSF--WSE--GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227
           +  ++ D++   +    SE  G + R   E L   GLR ++     ++ +      ++  
Sbjct: 112 KSLSEADVEALLAAPDLSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVM 171

Query: 228 KTGT-----------IITVE--LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274
             G+           I+ VE  L     +LL   P   +  F +    +M    F    K
Sbjct: 172 GKGSKERLVPMGEEAIVWVERYLRGARDELLGGKP--SDVLFPSTRGDQMTRQTFWHRIK 229

Query: 275 AKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            +AT AG+ KS   H +R   AT   + GA    +    G   +   + YT  A R RL
Sbjct: 230 HQATVAGIGKSLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARL 287


>gi|289625892|ref|ZP_06458846.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289646210|ref|ZP_06477553.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|298488278|ref|ZP_07006311.1| Site-specific recombinase XerD [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298157217|gb|EFH98304.1| Site-specific recombinase XerD [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|330867528|gb|EGH02237.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 298

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 54/239 (22%), Positives = 101/239 (42%), Gaps = 23/239 (9%)

Query: 112 RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
           R++   H+   VE+  + P S  +FL+  R  +++ +R++ ++++P L ++ P+      
Sbjct: 53  REVILDHLAWRVEN-AYKPRSTARFLSGARGFYRYLLREKLISVDPTLQIDMPQLGKPLP 111

Query: 172 RPWTKEDMQQFKSF--WSE--GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227
           +  ++ D++   +    SE  G + R   E L   GLR ++     ++ +      ++  
Sbjct: 112 KSLSEADVEALLAAPDLSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVM 171

Query: 228 KTGT-----------IITVE--LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274
             G+           I+ VE  L     +LL   P   +  F +    +M    F    K
Sbjct: 172 GKGSKERLVPMGEEAIVWVERYLRGARDELLGGKP--SDVLFPSTRGDQMTRQTFWHRIK 229

Query: 275 AKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            +AT AG+ KS   H +R   AT   + GA    +    G   +   + YT  A R RL
Sbjct: 230 HQATVAGIGKSLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARL 287


>gi|227890931|ref|ZP_04008736.1| site-specific DNA tyrosine recombinase, XerD [Lactobacillus
           salivarius ATCC 11741]
 gi|227867340|gb|EEJ74761.1| site-specific DNA tyrosine recombinase, XerD [Lactobacillus
           salivarius ATCC 11741]
          Length = 290

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 52/254 (20%), Positives = 116/254 (45%), Gaps = 28/254 (11%)

Query: 99  FDQIIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAI 155
           F + +R++    ++++  + I + +++ K+     SS ++ ++S+R  F++  +++ +  
Sbjct: 28  FLEYLRENEIPSFKQVNKEVIVNYMQAEKNNNKANSSILRSVSSLRKFFQYLAQEKIIEK 87

Query: 156 NPCLSVERPKRKTEGIRPWTKEDMQQF----KSFWSEGSQPRLAFEFLLYSGLRCSDSCR 211
           +P L ++ PK+K    +  TKE++++      +    G + R   E +  +GLR S+   
Sbjct: 88  DPMLLIDTPKKKQHLPQVLTKEEVEKLLHSPNTGQVLGLRDRAMLELMYATGLRISEIIN 147

Query: 212 AGVQHLQNNIFSIKTQKTGT---IITVE----------LPDGFMKLLAMTPIGKETFFIN 258
             ++ L   + +++T   G    I+ V           L +   KLL      K + ++ 
Sbjct: 148 LKLEDLHLTMGTLQTLGKGHKERIVPVGDEAIKWVNRYLEEARPKLLKQ----KRSNYLF 203

Query: 259 NDKQKMNATQFSIW--FKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWK 314
            +    N T+  +W   KA+  KAG+ K+   H +R   AT   + GA    +    G  
Sbjct: 204 LNFHGNNLTRQGVWKNLKAEVRKAGIQKNITPHTLRHSFATHILENGADLRIVQELLGHA 263

Query: 315 TVDQAETYTKGADR 328
            +   + YT  +++
Sbjct: 264 DISTTQIYTHLSNK 277


>gi|70728483|ref|YP_258232.1| site-specific tyrosine recombinase XerD [Pseudomonas fluorescens
           Pf-5]
 gi|68342782|gb|AAY90388.1| tyrosine recombinase XerD [Pseudomonas fluorescens Pf-5]
          Length = 298

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 54/239 (22%), Positives = 102/239 (42%), Gaps = 23/239 (9%)

Query: 112 RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
           R++   H+   VE + + P S  +FL+ +R  +++ +R++ + I+P L ++ P+      
Sbjct: 53  RELILDHLAWRVE-QAYKPRSTARFLSGVRGFYRYLLREKLIEIDPTLQIDMPQLGRPLP 111

Query: 172 RPWTKEDMQQFKSF--WSE--GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227
           +  ++ D++   +    SE  G + R   E L   GLR ++     ++ +      ++  
Sbjct: 112 KSLSEADVEALLAAPDLSEAIGQRDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVM 171

Query: 228 KTGT-----------IITVE--LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274
             G+           I+ VE  + D   +LL   P   +  F +   ++M    F    K
Sbjct: 172 GKGSKERLVPMGEEAIVWVERYMRDARAELLGGRP--SDVLFPSLRGEQMTRQTFWHRIK 229

Query: 275 AKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            +A  AG+ K  S H +R   AT   + GA    +    G   +   + YT  A R RL
Sbjct: 230 HQAKVAGIGKALSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARL 287


>gi|320323174|gb|EFW79263.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320329555|gb|EFW85544.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 298

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 54/239 (22%), Positives = 101/239 (42%), Gaps = 23/239 (9%)

Query: 112 RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
           R++   H+   VE+  + P S  +FL+  R  +++ +R++ ++++P L ++ P+      
Sbjct: 53  REVILDHLAWRVEN-AYKPRSTARFLSGARGFYRYLLREKLISVDPTLQIDMPQLGKPLP 111

Query: 172 RPWTKEDMQQFKSF--WSE--GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227
           +  ++ D++   +    SE  G + R   E L   GLR ++     ++ +      ++  
Sbjct: 112 KSLSEADVEALLAAPDLSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVM 171

Query: 228 KTGT-----------IITVE--LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274
             G+           I+ VE  L     +LL   P   +  F +    +M    F    K
Sbjct: 172 GKGSKERLVPMGEEAIVWVERYLRGARDELLGGKP--SDVLFPSTRGDQMTRQTFWHRIK 229

Query: 275 AKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            +AT AG+ KS   H +R   AT   + GA    +    G   +   + YT  A R RL
Sbjct: 230 HQATVAGIGKSLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHLA-RARL 287


>gi|71736133|ref|YP_273616.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71556686|gb|AAZ35897.1| tyrosine recombinase XerD [Pseudomonas syringae pv. phaseolicola
           1448A]
          Length = 298

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 54/239 (22%), Positives = 101/239 (42%), Gaps = 23/239 (9%)

Query: 112 RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
           R++   H+   VE+  + P S  +FL+  R  +++ +R++ ++++P L ++ P+      
Sbjct: 53  REVILDHLAWRVEN-AYKPRSTARFLSGARGFYRYLLREKLISVDPTLQIDMPQLGKPLP 111

Query: 172 RPWTKEDMQQFKSF--WSE--GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227
           +  ++ D++   +    SE  G + R   E L   GLR ++     ++ +      ++  
Sbjct: 112 KSLSEADVEALLAAPDLSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVM 171

Query: 228 KTGT-----------IITVE--LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274
             G+           I+ VE  L     +LL   P   +  F +    +M    F    K
Sbjct: 172 GKGSKERLVPMGEEAIVWVERYLRGARDELLGGKP--SDVLFPSTRGDQMTRQTFWHRIK 229

Query: 275 AKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            +AT AG+ KS   H +R   AT   + GA    +    G   +   + YT  A R RL
Sbjct: 230 HQATVAGIGKSLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARL 287


>gi|257487154|ref|ZP_05641195.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|331009225|gb|EGH89281.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 298

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 54/239 (22%), Positives = 101/239 (42%), Gaps = 23/239 (9%)

Query: 112 RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
           R++   H+   VE+  + P S  +FL+  R  +++ +R++ ++++P L ++ P+      
Sbjct: 53  REVILDHLAWRVEN-AYKPRSTARFLSGARGFYRYLLREKLISVDPTLQIDMPQLGKPLP 111

Query: 172 RPWTKEDMQQFKSF--WSE--GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227
           +  ++ D++   +    SE  G + R   E L   GLR ++     ++ +      ++  
Sbjct: 112 KSLSEADVEALLAAPDLSEAIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVM 171

Query: 228 KTGT-----------IITVE--LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274
             G+           I+ VE  L     +LL   P   +  F +    +M    F    K
Sbjct: 172 GKGSKERLVPMGEEAIVWVERYLRGARDELLGGKP--SDVLFPSTRGDQMTRQTFWHRIK 229

Query: 275 AKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            +AT AG+ KS   H +R   AT   + GA    +    G   +   + YT  A R RL
Sbjct: 230 HQATVAGIGKSLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARL 287


>gi|116492850|ref|YP_804585.1| tyrosine recombinase XerD subunit [Pediococcus pentosaceus ATCC
           25745]
 gi|116103000|gb|ABJ68143.1| tyrosine recombinase XerD subunit [Pediococcus pentosaceus ATCC
           25745]
          Length = 295

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 64/276 (23%), Positives = 115/276 (41%), Gaps = 28/276 (10%)

Query: 74  LISEYRKSAHWG-SLAVNSRISFES---YFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           LI++Y  S      L+ N+ IS+     + +  + K    D +KI    I   ++  K T
Sbjct: 4   LINDYLHSLKVERGLSDNTIISYRQELRHLNDYLTKEKITDIKKIDRYAILDYLDELKKT 63

Query: 130 P---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
               SS+I  ++S+R  FK+ +  + + ++P ++++ PKR        T  ++++     
Sbjct: 64  GRARSSSIHTISSLRKFFKYLLIVDKIDVDPMVNIDPPKRAHHLPSVLTTAEVEKLLQVP 123

Query: 187 SE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---IITVELPD 239
           +     G + R   E +  +GLR S+     +  L   +  I+T   G    II +   D
Sbjct: 124 NTNEPLGMRDRTILEVMYATGLRVSELITLNLNELHLEMGLIETIGKGNKKRIIPI--GD 181

Query: 240 GFMKLLAMTPIGKETFFINNDKQK---MN-----ATQFSIW--FKAKATKAGVNKSA--H 287
             +K L     G     + + K     +N      T+  IW   KA+  KAG+ K+   H
Sbjct: 182 VAIKWLNRYINGPRRILLGDKKYNEIFLNQHGHPLTRQGIWKNLKAQVKKAGIEKNITPH 241

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
            +R   AT   + GA    +    G   +   + YT
Sbjct: 242 TLRHSFATHLLENGADLRIVQELLGHADISTTQIYT 277


>gi|239828168|ref|YP_002950792.1| integrase [Geobacillus sp. WCH70]
 gi|239808461|gb|ACS25526.1| integrase family protein [Geobacillus sp. WCH70]
          Length = 329

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 53/248 (21%), Positives = 110/248 (44%), Gaps = 23/248 (9%)

Query: 97  SYFDQIIRKSG-DFDYRKITTKHIRSGV----ESRKHTPSSAIQF-LTSMRVLFKWAVRQ 150
           S F +I+R+ G + +  ++T + I+  V    +++K+  +  I   L ++R  F +  R+
Sbjct: 57  SVFYKILREQGIEVNIYRMTPEIIKQNVILYMKNQKNCKTVTINTRLRALRAFFNFLERE 116

Query: 151 EYVA--INPCLSVERPKRKTEGIRPWTKEDMQ------QFKSFWSEGSQPRLAFEFLLYS 202
           + ++   NP   ++  K + + +  +TKE++         ++F   G +       LL +
Sbjct: 117 KIISKKQNPFHEIKLLKDRKKAVPTFTKEEIHILFKQPNLRTFT--GVRDLTIMMLLLET 174

Query: 203 GLRCSDSC--RAGVQHLQNNIFSIKTQK----TGTIITVELPDGFMKLLAMT-PIGKETF 255
           G+R S+    R G    Q +   I+  K        I  ++ +   K LA+   +  +  
Sbjct: 175 GIRASECVGIRLGDIDFQRSRILIQNTKGYRQRYVPIQKQMKEQLKKYLAIRGTLDHDYL 234

Query: 256 FINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKT 315
           F++ D   +   Q     ++   K G++ + H  R   A +S +AGA   EL A  G  +
Sbjct: 235 FVSVDDTPLTKRQMQAQIESYGKKCGIHATCHKFRHTFARLSVEAGAGIFELQAVLGHSS 294

Query: 316 VDQAETYT 323
           ++  + Y 
Sbjct: 295 MEMVKHYV 302


>gi|160884146|ref|ZP_02065149.1| hypothetical protein BACOVA_02123 [Bacteroides ovatus ATCC 8483]
 gi|156110488|gb|EDO12233.1| hypothetical protein BACOVA_02123 [Bacteroides ovatus ATCC 8483]
          Length = 319

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 53/238 (22%), Positives = 96/238 (40%), Gaps = 20/238 (8%)

Query: 105 KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP 164
           K G  D      +H  +G+      P S  + L+ ++  F++ + ++Y+  +P   +E P
Sbjct: 53  KVGILDVCLSDLQHFAAGLHDIGIHPRSQARILSGIKSFFRFLIIEDYLEADPSELLEGP 112

Query: 165 KRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220
           K   +     T E++ +  S      +EG + R   E L   GLR S+     +  L  +
Sbjct: 113 KIGFKLPEVLTVEEIDRIISAVDRSKAEGQRNRAILETLYSCGLRVSELVTLKLSDLYFD 172

Query: 221 IFSIKTQKTGT---IITVELPDGFMKLLAMTPI--------GKETFFINNDKQKMNATQF 269
              IK +  G+   ++ +  P    ++    P         G E F   + ++    ++ 
Sbjct: 173 EGFIKVEGKGSKQRLVPIS-PRAINEIKLYIPDRNQIEVKKGHEDFVFVSQRRGKGLSRI 231

Query: 270 SIW--FKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
            I+   K  A KAG+ K  S H  R   AT   + GA    +    G +++   E YT
Sbjct: 232 MIFHMIKELAEKAGITKNISPHTFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYT 289


>gi|104773902|ref|YP_618882.1| site-specific recombinase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|103422983|emb|CAI97665.1| Site-specific recombinase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
          Length = 298

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 48/214 (22%), Positives = 92/214 (42%), Gaps = 24/214 (11%)

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFW 186
           SS  + ++++   ++W VRQ+ +A++P   ++ PKR+       T+ +    ++Q     
Sbjct: 70  SSISRLVSTLSRFYQWLVRQQLIALDPMSQIDAPKREKRMPLALTEAEVGKLLEQPDLTT 129

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---IITVE------- 236
             G + R   E L  +G+R S++    +  +  N+  IK    G+   +I V        
Sbjct: 130 DLGIRDRALLELLYATGMRVSEAVNLQLADVHANLQLIKVLGKGSKERLIPVSALALDWI 189

Query: 237 ---LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSA--HGV 289
              LP    +LL     GK + ++  + +    T+ ++W K K    +AG+ K    H +
Sbjct: 190 KRYLPVRDQQLLKR---GKSSDYLFLNSRGGQLTRQAVWQKIKKYCQQAGIAKDVTPHTL 246

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           R   AT   + GA    +    G   +   + YT
Sbjct: 247 RHSFATHLLEHGADLRVVQEILGHTDISTTQIYT 280


>gi|160884990|ref|ZP_02065993.1| hypothetical protein BACOVA_02986 [Bacteroides ovatus ATCC 8483]
 gi|156109340|gb|EDO11085.1| hypothetical protein BACOVA_02986 [Bacteroides ovatus ATCC 8483]
          Length = 405

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 55/225 (24%), Positives = 93/225 (41%), Gaps = 32/225 (14%)

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP--WTKEDMQQFKS--FWSE 188
           A+ + +  + +  +AV  + +A NPC  V   K   + +R    + E+MQ   S  + +E
Sbjct: 186 ALDYYSKFKKVINYAVDNDVIAKNPCKGVV-CKCDKQVLRKDVLSLEEMQALISTHYDNE 244

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-------NNIFSIKTQKT-----GTIITVE 236
             + R AF F LY+G+R  D     VQ L+       N I S +  KT      + + + 
Sbjct: 245 NPEIRRAFIFCLYTGIRFCD-----VQDLKYSNVDYSNKILSFEQNKTKGHSANSGVVIP 299

Query: 237 LPDGFMKLLA---MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRK 291
           L D  ++L+         +ET F     +  +AT      +    +AG+ K    H  R 
Sbjct: 300 LNDDLLQLIGEPHTEQYEQETIF-----RLPSATMCLKALRRWTKRAGITKHITWHCARH 354

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
             A    + GA    + +  G   +   E YT+  D ++    NS
Sbjct: 355 SFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVDSLKEAAINS 399


>gi|149914829|ref|ZP_01903359.1| Integrase [Roseobacter sp. AzwK-3b]
 gi|149811622|gb|EDM71457.1| Integrase [Roseobacter sp. AzwK-3b]
          Length = 308

 Score = 46.2 bits (108), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 101/233 (43%), Gaps = 18/233 (7%)

Query: 107 GDFDYRKITTKHIRSGVES-RKHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERP 164
           GD   R++  +H+ + +       P +A   L +++ +  WA    E +  +P   VER 
Sbjct: 54  GDLPARELRPRHVDALIRKIGADKPGAANNILDALKAMVSWANGPVELLTHDPTQGVERF 113

Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
             K EG RPWT + +   +  ++ G+  R  F    Y+G R SD  R     + +  FS+
Sbjct: 114 S-KGEGHRPWTSQQLAFAEQVFT-GTIRRFFF-LSRYTGQRISDVVRLSPNDVDDGGFSL 170

Query: 225 KTQKTGTIITVELPDGFMKLLA--MTPIGKETFFINNDKQKMNATQFS---IW--FKAKA 277
             +KTG      +   F +L A  +T   +   ++     K     FS   +W  F  + 
Sbjct: 171 PQKKTGVKPWCPI---FPELEAEMVTWERRPGPYLLQSSGKSAGKPFSTNQMWKAFDRER 227

Query: 278 TKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
            K  V   A  HG+R  +       G TA ++    G  +V+  E+Y++ ADR
Sbjct: 228 KKYSVLSGAVPHGLRANAVIRLRGEGYTALQISDMVG-MSVEMVESYSRHADR 279


>gi|329888682|ref|ZP_08267280.1| phage integrase family protein [Brevundimonas diminuta ATCC 11568]
 gi|328847238|gb|EGF96800.1| phage integrase family protein [Brevundimonas diminuta ATCC 11568]
          Length = 374

 Score = 46.2 bits (108), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 80/371 (21%), Positives = 142/371 (38%), Gaps = 69/371 (18%)

Query: 11  VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
           +TK+R    ++ Y++    G   RLP    S   P +M+A   +  +R    +P  K  T
Sbjct: 12  ITKKRADGSRVTYWYAWKGG--PRLPGSPGS---PEFMAAYNAAVAER---RAP--KTDT 61

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGV- 123
           L+ L   Y++S  + +L   ++  +  + D I+  S      G   +  +  + +++ + 
Sbjct: 62  LRSLAILYKQSPEYDALGDTTKREWTRWLDVIMDDSDAPLAIGGLPFDALDDRRVKAEIL 121

Query: 124 ------ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
                   R       IQ L+  RVL  W + +  +A+N    +++        + WT E
Sbjct: 122 AWRDQWADRPRKADYGIQVLS--RVL-SWGMDRGLLALNAAAGIKQLYTSNRADQIWTAE 178

Query: 178 DMQQFKSFWSEGSQPRLAF--EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIIT 234
           +++++    +    P + F      ++GLR  D       H+ +      T+K+ G    
Sbjct: 179 EIERYA---AAAKSPEVGFIVRLACHTGLRREDLASLCWSHVGDLAIVKATKKSRGKKTA 235

Query: 235 V-----------------------ELPDGFMKLLAMTPIGKETFFINNDKQ--KMNATQF 269
           V                       EL D   K     P+   T   N   +   ++  + 
Sbjct: 236 VIPLLDDTKALLEEIRAQQRRRHSELADSAAKKKRPAPVECLTVLSNTRGKPWSLDGLEH 295

Query: 270 SIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKT----------VDQA 319
            +   AKA  AG+NK  H  R   AT    AG TA E+    GW+           VD+ 
Sbjct: 296 QV-VDAKAA-AGINKHLHDARGTFATRLRRAGLTAAEIADILGWEEDRVQRLLAVYVDRD 353

Query: 320 ETYTKGADRIR 330
               + A+RIR
Sbjct: 354 SIVMEIANRIR 364


>gi|227893483|ref|ZP_04011288.1| integrase-recombinase [Lactobacillus ultunensis DSM 16047]
 gi|227864708|gb|EEJ72129.1| integrase-recombinase [Lactobacillus ultunensis DSM 16047]
          Length = 303

 Score = 46.2 bits (108), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 50/214 (23%), Positives = 92/214 (42%), Gaps = 23/214 (10%)

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFW 186
           SS  + ++SMR  ++W  RQ    +NP L ++ PK++       T+E+    ++Q     
Sbjct: 74  SSISRLISSMRKFYQWLARQNIQKLNPMLEIDLPKKERRLPTALTQEEVNKLLEQPDVKR 133

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---IITVE-LPDGFM 242
             G + R   E L  +G+R S+     +Q L +++  ++    G+   +I +  +   ++
Sbjct: 134 KLGLRDRAILETLYATGMRVSELINLELQDLHDDLGLVRVIGKGSKERLIPISPVALNWI 193

Query: 243 K---------LLAMTPIGKETFFINNDKQKMNATQFSIW--FKAKATKAGVNKSA--HGV 289
           K         L+       E  F+N+ + KM  T+ +IW   K     AG+ K    H +
Sbjct: 194 KKYEKEVRDPLILHVGQNDEHIFLNS-RGKM-LTRQAIWQMIKKYCQMAGIVKDVTPHTL 251

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           R   AT   + GA    +    G   +   + YT
Sbjct: 252 RHTFATHLLENGADLRVVQEILGHSDISTTQIYT 285


>gi|150003451|ref|YP_001298195.1| integrase [Bacteroides vulgatus ATCC 8482]
 gi|254881251|ref|ZP_05253961.1| integrase [Bacteroides sp. 4_3_47FAA]
 gi|294777667|ref|ZP_06743118.1| tyrosine recombinase XerD [Bacteroides vulgatus PC510]
 gi|319640253|ref|ZP_07994978.1| integrase [Bacteroides sp. 3_1_40A]
 gi|149931875|gb|ABR38573.1| integrase [Bacteroides vulgatus ATCC 8482]
 gi|254834044|gb|EET14353.1| integrase [Bacteroides sp. 4_3_47FAA]
 gi|294448735|gb|EFG17284.1| tyrosine recombinase XerD [Bacteroides vulgatus PC510]
 gi|317388028|gb|EFV68882.1| integrase [Bacteroides sp. 3_1_40A]
          Length = 313

 Score = 46.2 bits (108), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 49/232 (21%), Positives = 89/232 (38%), Gaps = 17/232 (7%)

Query: 109 FDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168
            D R    +   +G+      P S  + L+ +R  +++ + ++Y+  +P   +E P+   
Sbjct: 51  LDVRLENLEDFSAGLHDIGIHPRSQARILSGIRSFYRFLIMEDYLKADPTELLESPQTGF 110

Query: 169 EGIRPWTKEDMQQFKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
           +     T E++            EG + R   E L   GLR S+ C   +  L      I
Sbjct: 111 KLPEVMTVEEIDLLIGSIDRSTKEGQRNRAILETLYSCGLRVSELCNLKLSELYFEEGFI 170

Query: 225 KTQKTGT-----------IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF 273
           K +  G+           I  + L      L+ + P  ++  FI+N  + ++        
Sbjct: 171 KVEGKGSKQRLVPISPRAIKEIRLYFTDRNLMKIKPGFEDFVFISNFGKNISRIMVFHII 230

Query: 274 KAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           K  A + G+ K  S H  R   AT   + GA    +    G +++   E YT
Sbjct: 231 KELAARIGLKKKISPHTFRHSFATHLLEGGANLRAIQCMLGHESIGTTEIYT 282


>gi|296133169|ref|YP_003640416.1| tyrosine recombinase XerD [Thermincola sp. JR]
 gi|296031747|gb|ADG82515.1| tyrosine recombinase XerD [Thermincola potens JR]
          Length = 295

 Score = 46.2 bits (108), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 44/212 (20%), Positives = 95/212 (44%), Gaps = 21/212 (9%)

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ----QFKSFW 186
           S+  + L S++  +++ +R++++  +P +++E PK + +  R  + E+++    Q +   
Sbjct: 68  STISRHLASLKSFYQYLLREKHIEQDPTVNLESPKLQKKLPRVLSVEEVEILLNQPRLNE 127

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---IITVE------- 236
             GS+ +   E L  +G+R S+     + H+   +  ++    G+   II +        
Sbjct: 128 PAGSRDKAMLELLYATGIRVSELISLDLDHVNLEMGYVRCFGKGSKERIIPIGSLAKKYV 187

Query: 237 ---LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRK 291
              L  G ++L+     G+   F+N+  ++M    F    K  A +AG+ K  + H +R 
Sbjct: 188 EEYLHRGRVRLIKSK--GETALFVNHHGRRMTRQGFWKIIKKYAREAGIKKDITPHTLRH 245

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYT 323
             AT   + GA    +    G   +   + YT
Sbjct: 246 SFATHLLENGADLRSVQEMLGHADITTTQIYT 277


>gi|258541575|ref|YP_003187008.1| phage integrase (truncated middle) [Acetobacter pasteurianus IFO
           3283-01]
 gi|256632653|dbj|BAH98628.1| phage integrase (truncated middle) [Acetobacter pasteurianus IFO
           3283-01]
 gi|256635710|dbj|BAI01679.1| phage integrase (truncated middle) [Acetobacter pasteurianus IFO
           3283-03]
 gi|256638765|dbj|BAI04727.1| phage integrase (truncated middle) [Acetobacter pasteurianus IFO
           3283-07]
 gi|256641819|dbj|BAI07774.1| phage integrase (truncated middle) [Acetobacter pasteurianus IFO
           3283-22]
 gi|256644874|dbj|BAI10822.1| phage integrase (truncated middle) [Acetobacter pasteurianus IFO
           3283-26]
 gi|256647929|dbj|BAI13870.1| phage integrase (truncated middle) [Acetobacter pasteurianus IFO
           3283-32]
 gi|256650982|dbj|BAI16916.1| phage integrase (truncated middle) [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256653973|dbj|BAI19900.1| phage integrase (truncated middle) [Acetobacter pasteurianus IFO
           3283-12]
          Length = 101

 Score = 46.2 bits (108), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 38/71 (53%)

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202
           +F++A    +   NP   ++  K +      W+++D++ F++FW  GS+ RL     LY+
Sbjct: 1   MFQYAFEHGWRQDNPVKDIKMLKYRKNPFPTWSEKDIRIFENFWPIGSRARLTLALFLYT 60

Query: 203 GLRCSDSCRAG 213
           G R SD  R G
Sbjct: 61  GQRRSDVIRMG 71


>gi|304385052|ref|ZP_07367398.1| tyrosine recombinase XerD [Pediococcus acidilactici DSM 20284]
 gi|304329246|gb|EFL96466.1| tyrosine recombinase XerD [Pediococcus acidilactici DSM 20284]
          Length = 296

 Score = 46.2 bits (108), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 45/212 (21%), Positives = 89/212 (41%), Gaps = 21/212 (9%)

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-- 188
           SS+I  ++S+R  FK+ +  + +  NP ++++ PKR        T E++++         
Sbjct: 69  SSSIHTISSLRKFFKYLLLNDQIQTNPMVNIDPPKRAQHLPSVLTTEEVERLLKVPDTSK 128

Query: 189 --GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT--------IITVELP 238
             G + R   E +  +GLR S+     +  L   +  I+T   G          + ++  
Sbjct: 129 PLGIRDRAILEVMYATGLRVSELIALNLNELHLEMGLIETVGKGNKQRIIPIGDVAIQWL 188

Query: 239 DGFMKLLAMTPIGKETF---FINNDKQKMNATQFSIW--FKAKATKAGVNKSA--HGVRK 291
           + ++       +G + +   F+N     +  T+  +W   KA+  KAG+ K+   H +R 
Sbjct: 189 ERYINGPRRALLGAKRYNEIFLNQHGHPL--TRQGVWKNLKAQVQKAGIKKNITPHTLRH 246

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYT 323
             AT   + GA    +    G   +   + YT
Sbjct: 247 SFATHLLENGADLRIVQELLGHADISTTQIYT 278


>gi|219852288|ref|YP_002466720.1| integrase family protein [Methanosphaerula palustris E1-9c]
 gi|219546547|gb|ACL16997.1| integrase family protein [Methanosphaerula palustris E1-9c]
          Length = 292

 Score = 45.8 bits (107), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 28/133 (21%), Positives = 67/133 (50%), Gaps = 7/133 (5%)

Query: 99  FDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158
           FDQ+    G  D R++ T ++ +  +   ++  +  + ++++   +++   Q  VA+NP 
Sbjct: 48  FDQV----GGADDRRLITGYLSALSQEHGYSAKTLHRIISTLSSFYRFLYAQGAVAVNPV 103

Query: 159 LSVERPKRKTEGIRPWT-KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217
             ++RPK K + +R    ++ ++  +S  S   Q  L    +  +G+R S+ C   ++H+
Sbjct: 104 TGIDRPKIKRQELRYLKHRQVLKLIESMPSVRDQ--LVVRMIYATGVRVSELCGISIEHI 161

Query: 218 QNNIFSIKTQKTG 230
             +  +I+ +  G
Sbjct: 162 DFDDLTIRIRGKG 174


>gi|326803729|ref|YP_004321547.1| tyrosine recombinase XerD [Aerococcus urinae ACS-120-V-Col10a]
 gi|326651687|gb|AEA01870.1| tyrosine recombinase XerD [Aerococcus urinae ACS-120-V-Col10a]
          Length = 299

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 52/249 (20%), Positives = 104/249 (41%), Gaps = 26/249 (10%)

Query: 99  FDQIIRKSGDFDYRKITTKHIRSGVES---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAI 155
           F  I+ ++G  D + +  + I   +E+   +    S+  Q+L+++R  FK+ +    +  
Sbjct: 35  FQMILSEAGIEDIQAVKRQDIIQQLENLNQKGRAVSTMSQYLSTLRHFFKYLILDSVIEE 94

Query: 156 NPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCR 211
           NP  ++  PK+K +  +  + E++ +         + G + R   E L  SGLR S+   
Sbjct: 95  NPVENISLPKKKQQLPQVLSVEEVDRLLEMPDVNSTLGLRDRSLLELLYASGLRVSELVH 154

Query: 212 AGVQHLQNNIFSIKTQKTGT---IITVE----------LPDGFMKLLAMTPIGKETFFIN 258
             +     ++  ++T   G    II +           L +  +KLL      +   ++N
Sbjct: 155 LKISDFHEDLGFLQTIGKGNKERIIPLGEVAKDWLQTYLKESRLKLLGENDQSQGMIYLN 214

Query: 259 NDKQKMNATQFSIWFKAKA--TKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWK 314
           +  + +  ++  +W K K     AG+ K  S H +R   AT   + GA    +    G  
Sbjct: 215 HHGRPL--SRQGVWKKLKQYIQAAGITKEVSPHTLRHSFATHLLENGADLRVVQELLGHA 272

Query: 315 TVDQAETYT 323
            +   + YT
Sbjct: 273 DISTTQIYT 281


>gi|319654979|ref|ZP_08009052.1| hypothetical protein HMPREF1013_05674 [Bacillus sp. 2_A_57_CT2]
 gi|317393333|gb|EFV74098.1| hypothetical protein HMPREF1013_05674 [Bacillus sp. 2_A_57_CT2]
          Length = 258

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 52/240 (21%), Positives = 98/240 (40%), Gaps = 13/240 (5%)

Query: 102 IIRKSGDFDYRKITTKHIRS--GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL 159
           +I+  GD     ITT+ I+   G  + +   SS    +  ++ LFKWA  ++YV+INP  
Sbjct: 13  LIKYFGDIKITDITTESIKLYLGEVAAELKASSLCHRIRFIKSLFKWAQEEKYVSINPVS 72

Query: 160 SVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN 219
           S++ PK ++   +  T+E+++  +       +  L FEF+  +G R  +      +H  N
Sbjct: 73  SIKEPKPESRIPKFLTEEEIELLREACKTTFEKAL-FEFMYSTGYRIGEVVNLD-KHSIN 130

Query: 220 N------IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFIN-NDKQKMNATQFSIW 272
                  +F    ++    I         +        ++  F+      +M+  Q    
Sbjct: 131 MAEQSVIVFGKGKKEREVYINTRCSIWLKRYREERADDQQALFVTIRAPHRMSIAQMRYV 190

Query: 273 FKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
            K  + +AG+NK    H +R   AT   + GA    +    G +  +    Y   +  +R
Sbjct: 191 IKQISKRAGINKCIYPHQLRHSYATTLINNGAPLEVIQNLMGHEKSETTRVYAYLSGHLR 250


>gi|257485790|ref|ZP_05639831.1| Orf28 [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|302130312|ref|ZP_07256302.1| Orf28 [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|331012886|gb|EGH92942.1| Orf28 [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 319

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 53/243 (21%), Positives = 98/243 (40%), Gaps = 25/243 (10%)

Query: 99  FDQIIRKSGDFDYRKITTKHI---RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI 155
           F   I  +   D+R++T  H+   R+ +E R    ++  + L ++  LF   +    VA 
Sbjct: 52  FSSFIGLASADDFRQVTRSHVLAWRADLEHRGLAGATIRRKLAALASLFDHLLENNAVAG 111

Query: 156 -NPCLSVERPKRKT-EGIRP-----WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD 208
            NP   V+RP+ +T EG  P       K+ ++   +   +G + R     LLY GLR  +
Sbjct: 112 GNPVHGVKRPRIETNEGKTPALGDHQAKQLLEAPDTETLKGLRDRAILAVLLYHGLRREE 171

Query: 209 SCRAGVQHLQN--NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF--FINNDKQKM 264
           + +     LQ    I  ++    G+ I         + L + P+  E    ++  D ++ 
Sbjct: 172 AAQLHTHDLQERRGIKHLRVHGKGSKI---------RFLPLHPVAAERIHAYLEQDNERA 222

Query: 265 NATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            AT   ++   + T  G   +A+G+       +  AG    E +  +G +          
Sbjct: 223 -ATPGPLFRSLRGTTTGAGITANGIYTVVEAYAKKAGIVV-EHLGVHGLRATAATNALEH 280

Query: 325 GAD 327
            AD
Sbjct: 281 DAD 283


>gi|119026081|ref|YP_909926.1| site-specific tyrosine recombinase XerC [Bifidobacterium
           adolescentis ATCC 15703]
 gi|118765665|dbj|BAF39844.1| probable integrase [Bifidobacterium adolescentis ATCC 15703]
          Length = 329

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 56/272 (20%), Positives = 108/272 (39%), Gaps = 36/272 (13%)

Query: 87  LAVNSRISFESYFDQII---RKSGDFDYRKITTKHIR--SGVESRKHTPSSAIQFLTSMR 141
           L+ N+R ++ S  ++ +   RK G  D  ++T + +R      S+ H  SS  +   ++R
Sbjct: 41  LSANTRRAYRSDVEECLVALRKQGCVDLNEVTIEDLRLWMAESSKNHARSSMARKTVAVR 100

Query: 142 VLFKWAVRQEYVAINPCLSVERPK---------RKTEGIRPWTKEDMQQFKSFWSEGSQP 192
             F WA   +  + NP  S++ PK          +T+  +   + D    ++   E +  
Sbjct: 101 GFFAWAYDHDMASANPAASLQTPKIPDTLPAVLNETQAQQLMDRVDEDGMEARSQEPNMK 160

Query: 193 RLA--------FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
           + A         E L  +G+R ++     V  +     ++K    G    V +P G    
Sbjct: 161 KQAIALRDAAMLELLYATGMRVAELVGLDVADVTFGNRTVKVTGKGDKQRV-MPFGAPAD 219

Query: 245 LAM------------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRK 291
            A+              +  + FF+ +   +++          +A +AGV + S H +R 
Sbjct: 220 KALRDWLEHGRPVLCGDMSDDAFFLGSQGGRIDQRMVRKVVHDRAREAGVPDISPHALRH 279

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYT 323
            +AT   D GA   E+    G  ++   + YT
Sbjct: 280 SAATHMLDGGADLREVQEMLGHSSLKTTQRYT 311


>gi|170742031|ref|YP_001770686.1| integrase family protein [Methylobacterium sp. 4-46]
 gi|168196305|gb|ACA18252.1| integrase family protein [Methylobacterium sp. 4-46]
          Length = 349

 Score = 45.8 bits (107), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 48/232 (20%), Positives = 85/232 (36%), Gaps = 16/232 (6%)

Query: 91  SRISFESYFDQIIRKSGDFDYRKITTKHIRS---------GVESRKHTPSSAIQFLTSMR 141
           +R  +  +   I ++ GDF    +T +  R           V SR+     A    + + 
Sbjct: 81  TRADYVRHIKVIEQEFGDFPLGALTDRRTRGEFLTWRDRLAVRSRRQ----ADYAWSVLA 136

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201
            +  WA+ +  +  NPC    R  R +   + WT +D ++F +  S  +   L     L+
Sbjct: 137 RILSWALDRGLILANPCERGGRLYRASRTDKVWTDDDERRFLA--SAPAHLHLPLILALW 194

Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK 261
           +G R  D  R            +K  KTG  + + +       L   P       +N++ 
Sbjct: 195 TGQRQGDLLRLPWSAYDGETVRLKQGKTGARVVIPVGAPLRAALDAAPRVSPVILVNSEG 254

Query: 262 QKMNATQF-SIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYG 312
           +      F S W KA         + H +R  + +  A AG +  E+    G
Sbjct: 255 RPWTGDGFRSSWGKACRAAGIRGLTFHDLRGTAVSRLALAGCSEAEIATLTG 306


>gi|28868685|ref|NP_791304.1| integrase/recombinase XerD [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|28851924|gb|AAO54999.1| integrase/recombinase XerD [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|331016306|gb|EGH96362.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 298

 Score = 45.8 bits (107), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 53/239 (22%), Positives = 101/239 (42%), Gaps = 23/239 (9%)

Query: 112 RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
           R++   H+   VE+  + P S  +FL+  R  +++ +R++ ++++P L ++ P+      
Sbjct: 53  REVILDHLAWRVEN-AYKPRSTARFLSGARGFYRYLLREKLISVDPTLQIDMPQLGKPLP 111

Query: 172 RPWTKEDMQQFKSF--WSE--GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227
           +  ++ D++   +    SE  G + R   E L   GLR ++     ++ +      ++  
Sbjct: 112 KSLSEADVEALLAAPDLSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVM 171

Query: 228 KTGT-----------IITVE--LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274
             G+           I+ VE  +     +LL   P   +  F +    +M    F    K
Sbjct: 172 GKGSKERLVPMGEEAIVWVERYMRGARDELLGGKP--SDVLFPSTRGDQMTRQTFWHRIK 229

Query: 275 AKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            +AT AG+ KS   H +R   AT   + GA    +    G   +   + YT  A R RL
Sbjct: 230 HQATVAGIGKSLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARL 287


>gi|71725297|ref|YP_272272.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. phaseolicola 1448A]
 gi|71558887|gb|AAZ38096.1| site-specific recombinase, phage integrase family [Pseudomonas
           syringae pv. phaseolicola 1448A]
          Length = 319

 Score = 45.8 bits (107), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 52/242 (21%), Positives = 98/242 (40%), Gaps = 23/242 (9%)

Query: 99  FDQIIRKSGDFDYRKITTKHI---RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI 155
           F   I  +   D+R++T  H+   R+ +E R    ++  + L ++  LF + +    VA 
Sbjct: 52  FSSFIGLASADDFRQVTRSHVLAWRADLEQRGLAGATIRRKLAALASLFDYLLENNAVAG 111

Query: 156 -NPCLSVERPKRKT-EGIRP-----WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD 208
            NP   V+RP+ +T EG  P       K+ ++   +   +G + R     LLY GLR  +
Sbjct: 112 GNPVHGVKRPRIETNEGKTPALGDHQAKQLLEAPDTETLKGLRDRAILAVLLYHGLRREE 171

Query: 209 SCRAGVQHLQN--NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA 266
           + +     LQ    I  ++    G+ I         + L + P+  E  +   ++    A
Sbjct: 172 AAQLHTHDLQERRGIKHLRVHGKGSKI---------RFLPLHPVAAERIYAYLEQDSERA 222

Query: 267 TQFSIWFKA-KATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
            +    F++ + T  G   +A+G+       +  AG    E +  +G +           
Sbjct: 223 AKPGPLFRSLRGTTTGAAITANGIYSVVEAYAKKAGIVV-EHLGVHGLRATAATNALEHD 281

Query: 326 AD 327
           AD
Sbjct: 282 AD 283


>gi|237711564|ref|ZP_04542045.1| integrase [Bacteroides sp. 9_1_42FAA]
 gi|237725982|ref|ZP_04556463.1| integrase [Bacteroides sp. D4]
 gi|265752992|ref|ZP_06088561.1| tyrosine recombinase XerD [Bacteroides sp. 3_1_33FAA]
 gi|229435790|gb|EEO45867.1| integrase [Bacteroides dorei 5_1_36/D4]
 gi|229454259|gb|EEO59980.1| integrase [Bacteroides sp. 9_1_42FAA]
 gi|263236178|gb|EEZ21673.1| tyrosine recombinase XerD [Bacteroides sp. 3_1_33FAA]
          Length = 308

 Score = 45.8 bits (107), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 49/232 (21%), Positives = 89/232 (38%), Gaps = 17/232 (7%)

Query: 109 FDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168
            D R    +   +G+      P S  + L+ +R  +++ + ++Y+  +P   +E P+   
Sbjct: 51  LDVRLENLEDFSAGLHDIGIHPRSQARILSGIRSFYRFLIMEDYLESDPTELLESPQTGF 110

Query: 169 EGIRPWTKEDMQQFKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
           +     T E++            EG + R   E L   GLR S+ C   +  L      I
Sbjct: 111 KLPEVMTVEEIDLLIGSIDRGTKEGQRNRAILETLYSCGLRVSELCNLKLSELYFEEGFI 170

Query: 225 KTQKTGT-----------IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF 273
           K +  G+           I  + L      L+ + P  ++  FI+N  + ++        
Sbjct: 171 KVEGKGSKQRLVPISPRAIKEIRLYFTDRNLMKIKPGFEDFVFISNFGKNISRIMVFHII 230

Query: 274 KAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           K  A + G+ K  S H  R   AT   + GA    +    G +++   E YT
Sbjct: 231 KELAERIGLKKKISPHTFRHSFATHLLEGGANLRAIQCMLGHESIGTTEIYT 282


>gi|293373295|ref|ZP_06619653.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|292631691|gb|EFF50311.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
          Length = 383

 Score = 45.8 bits (107), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 57/231 (24%), Positives = 104/231 (45%), Gaps = 19/231 (8%)

Query: 117 KHIRSGVESRKHTPSSAI-QFLTSMRVLFKWAVRQEYVAINP--CLSVERPKRKTEGIRP 173
           KH     +  KH  +S I  ++ +  V    A++  Y  INP   LS +   ++ +  R 
Sbjct: 152 KHDYVSYKGNKHLQNSTIVDYVRTFSVAINAAIKDGYKIINPFKLLSSDEKVKQPDSHRE 211

Query: 174 W-TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD--SCRAGVQHLQNNIF--SIKTQK 228
           + ++E++Q+             A+ F  +SGLR SD  + R     +++  F   +  QK
Sbjct: 212 YLSQEELQKLMITPCRRDDIGKAYLFACFSGLRISDIRALRWKNIIVEDGQFFAMLFMQK 271

Query: 229 TGTIITVELPDGFMKLLAMTPIGKE-TFFI-NNDKQKMNATQFSIWFKAKATKAGVNK-- 284
           TG  + + LPD  M+++++    ++  FF+ +N   + N  +   W +A    AG+NK  
Sbjct: 272 TGKELKIPLPDKAMEIISIRGNDEDKVFFLPSNPTVEDNLKK---WAEA----AGINKHL 324

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335
           + H  R   AT+    GA  + +    G   V   + Y K  D+ ++   N
Sbjct: 325 TFHTARHTYATLLLTLGADLYTVSKMLGHTNVATTQIYAKVVDKKKVDAVN 375


>gi|225025686|ref|ZP_03714878.1| hypothetical protein EIKCOROL_02588 [Eikenella corrodens ATCC
           23834]
 gi|224941579|gb|EEG22788.1| hypothetical protein EIKCOROL_02588 [Eikenella corrodens ATCC
           23834]
          Length = 344

 Score = 45.8 bits (107), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 62/270 (22%), Positives = 106/270 (39%), Gaps = 15/270 (5%)

Query: 10  FVTKERTR-HGKI-IYYFRKGH--GRRIRLPYPHESTFIPAYMSALTGST-PKREYINSP 64
            + + RTR +GK  +YY+  G   GRR  +P   +        S L  +  PK   +  P
Sbjct: 15  MLARRRTRKNGKTTVYYYYDGREDGRRKEIPLGTDYIAAVQEWSKLEAAKLPKSARVTFP 74

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
                 L+ +IS   +S +  S A N+      +F          D  +I   H+R  ++
Sbjct: 75  VAAERYLQNIISH--RSRNTISSANNAVRKLSKFFGG--ENPAPLD--EIEPAHVRRYLD 128

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI-NPCLSVERPKRKTEGIRPWTKEDMQQFK 183
            RK TP  A   +  +  +F +A  Q + +  NPC +V++  +K    R    ED     
Sbjct: 129 WRKDTPGGANNEIGYLSAIFNYAREQGWTSKENPCRNVKKHSKKR---REVYIEDYLYQA 185

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
            + +   Q R   +    +G R  D       H+   I  I  QKTG  +  E+     +
Sbjct: 186 VYQAASQQMRDLMDIAYITGQRPVDIVGIHSSHIHEGILHISQQKTGAKLRFEISGKLKE 245

Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWF 273
           ++          F+N+  + ++    S  F
Sbjct: 246 IIDRIHQDNGYLFLNSHGKPLSRAALSRQF 275


>gi|306843261|ref|ZP_07475870.1| phage integrase family protein [Brucella sp. BO2]
 gi|306286527|gb|EFM58110.1| phage integrase family protein [Brucella sp. BO2]
          Length = 235

 Score = 45.4 bits (106), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 52/105 (49%), Gaps = 6/105 (5%)

Query: 129 TPSSAIQFLTSMRVLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQ-QFKSFW 186
           TP +A   L ++R + +WA   +E ++ +P   V    R+ EG +PWT E +    K+F 
Sbjct: 8   TPGAANNLLDALRAMCRWASGPRELLSRDPTQGVAH-FRQGEGHKPWTPEQLAFADKNF- 65

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
                 R A+    Y+G R SD  R G   + +  FS+  +KTG 
Sbjct: 66  --TGMLRRAYVLARYTGQRISDVVRLGWTDIDDGGFSLPQKKTGV 108


>gi|289675311|ref|ZP_06496201.1| site-specific recombinase, phage integrase family protein
           [Pseudomonas syringae pv. syringae FF5]
          Length = 312

 Score = 45.4 bits (106), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 45/208 (21%), Positives = 88/208 (42%), Gaps = 12/208 (5%)

Query: 108 DFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167
           +F+ R++  +H+ +       TP+ A + ++ +R++F +A+ ++ V  NPC  +   +R 
Sbjct: 78  EFEPRQVLPRHVAALKLHMSDTPNMANRVISFLRMVFAYALERQIVDSNPCTGI---RRH 134

Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQ-PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226
            E  R     D  +F +  +  S+   + +E    +G R SD     +  + +   + + 
Sbjct: 135 AEKKRDRYISD-AEFAAICAASSEYMSVIWEMCFLTGQRISDVLSIKLSDISDVGIAFEQ 193

Query: 227 QKTGTIITVELPDGFMKLLAMTPI------GKETFFINNDKQKMNATQFSIWFKAKATKA 280
           QKTG  + V +      LL           G   F   +  + ++     + F+A    A
Sbjct: 194 QKTGAKLIVGMSPDLKALLDRVNALPRKVRGATLFCARSGGKPVSYDTCKMGFRAACKAA 253

Query: 281 GV-NKSAHGVRKFSATISADAGATAHEL 307
           GV   + H +R  S T +   G  A  L
Sbjct: 254 GVKGATIHDLRAKSLTDTDRQGNNAQML 281


>gi|317128823|ref|YP_004095105.1| integrase family protein [Bacillus cellulosilyticus DSM 2522]
 gi|315473771|gb|ADU30374.1| integrase family protein [Bacillus cellulosilyticus DSM 2522]
          Length = 280

 Score = 45.4 bits (106), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 53/238 (22%), Positives = 101/238 (42%), Gaps = 22/238 (9%)

Query: 102 IIRKSGDFDYRKITTKHIRSGV--ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL 159
           +IR  GD +   +T  H+++ +  E ++  PSS       +R  F+WA   + ++ NP +
Sbjct: 34  LIRFLGDMEAEDVTIFHLKNYLIEEQKRLKPSSFQHRCKFIRSFFRWAHEYDLLSKNPAI 93

Query: 160 SVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN 219
            V+ PK      +P  +E ++  +   S+     L  EF+  +G+R  +     V +L  
Sbjct: 94  KVKMPKDHYRIPKPVNEETLELLR-IASKSPLEGLLVEFMYSAGVRVGE-----VYNLNK 147

Query: 220 NIFSI---------KTQKTGTIITVELPDGFMKLLAMTPIGKETFFI---NNDKQKMNAT 267
             F+          K  K   +   +  + +++    +   +E  FI   N   ++M+  
Sbjct: 148 KDFNFTNRSVYVFGKGDKEREVYFSKRAEIWIQRYFDSRQDEEECFICSKNKPYRRMSID 207

Query: 268 QFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           Q    FK  A KA V+++   H +R   A+   + GA+   +    G K  +    YT
Sbjct: 208 QIRWHFKKLARKAEVDENVYPHRLRHSYASHLINRGASLEMVRDMLGHKRTETTRVYT 265


>gi|330872807|gb|EGH06956.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 298

 Score = 45.4 bits (106), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 53/239 (22%), Positives = 101/239 (42%), Gaps = 23/239 (9%)

Query: 112 RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
           R++   H+   V++  + P S  +FL+  R  +++ +R++ +A++P L ++ P+      
Sbjct: 53  REVILDHLAWRVDN-AYKPRSTARFLSGARGFYRYLLREKLIAVDPTLQIDMPQLGKPLP 111

Query: 172 RPWTKEDMQQFKSF--WSE--GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227
           +  ++ D++   +    SE  G + R   E L   GLR ++     ++ +      ++  
Sbjct: 112 KSLSEADVEALLAAPDLSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVM 171

Query: 228 KTGT-----------IITVE--LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274
             G+           I+ VE  +     +LL   P   +  F +    +M    F    K
Sbjct: 172 GKGSKERLVPMGEEAIVWVERYMRGARDELLGGKP--SDVLFPSTRGDQMTRQTFWHRIK 229

Query: 275 AKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            +AT AG+ KS   H +R   AT   + GA    +    G   +   + YT  A R RL
Sbjct: 230 HQATVAGIGKSLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARL 287


>gi|330964079|gb|EGH64339.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 298

 Score = 45.4 bits (106), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 53/239 (22%), Positives = 102/239 (42%), Gaps = 23/239 (9%)

Query: 112 RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
           R++   H+   V++  + P S  +FL+  R  +++ +R++ +A++P L ++ P+      
Sbjct: 53  REVILDHLAWRVDN-AYKPRSTARFLSGARGFYRYLLREKLIAVDPTLQIDMPQLGKPLP 111

Query: 172 RPWTKEDMQQFKSF--WSE--GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227
           +  ++ D++   +    SE  G + R   E L   GLR ++     ++ +      ++  
Sbjct: 112 KSLSEADVEALLAAPDLSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVM 171

Query: 228 KTGT-----------IITVE--LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274
             G+           I+ VE  +     +LL   P   +  F +    +M    F    K
Sbjct: 172 GKGSKERLVPMGEEAIVWVERYMRGARDELLGGKP--SDVLFPSTRGDQMTRQTFWHRIK 229

Query: 275 AKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            +AT AG++KS   H +R   AT   + GA    +    G   +   + YT  A R RL
Sbjct: 230 HQATVAGISKSLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARL 287


>gi|213969060|ref|ZP_03397199.1| integrase/recombinase XerD [Pseudomonas syringae pv. tomato T1]
 gi|301384045|ref|ZP_07232463.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           tomato Max13]
 gi|302058751|ref|ZP_07250292.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           tomato K40]
 gi|302131712|ref|ZP_07257702.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           tomato NCPPB 1108]
 gi|213926058|gb|EEB59614.1| integrase/recombinase XerD [Pseudomonas syringae pv. tomato T1]
          Length = 298

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 53/239 (22%), Positives = 101/239 (42%), Gaps = 23/239 (9%)

Query: 112 RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
           R++   H+   VE+  + P S  +FL+  R  +++ +R++ ++++P L ++ P+      
Sbjct: 53  REVILDHLAWRVEN-AYKPRSTARFLSGARGFYRYLLREKLISVDPTLQIDMPQLGKPLP 111

Query: 172 RPWTKEDMQQFKSF--WSE--GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227
           +  ++ D++   +    SE  G + R   E L   GLR ++     ++ +      ++  
Sbjct: 112 KSLSEADVEALLAAPDLSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVM 171

Query: 228 KTGT-----------IITVE--LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274
             G+           I+ VE  +     +LL   P   +  F +    +M    F    K
Sbjct: 172 GKGSKERLVPMGEEAIVWVERYMRGARDELLGGKP--SDVLFPSTRGDQMTRQTFWHRIK 229

Query: 275 AKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            +AT AG+ KS   H +R   AT   + GA    +    G   +   + YT  A R RL
Sbjct: 230 HQATVAGIGKSLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARL 287


>gi|212695398|ref|ZP_03303526.1| hypothetical protein BACDOR_04947 [Bacteroides dorei DSM 17855]
 gi|212662033|gb|EEB22607.1| hypothetical protein BACDOR_04947 [Bacteroides dorei DSM 17855]
          Length = 308

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 49/232 (21%), Positives = 89/232 (38%), Gaps = 17/232 (7%)

Query: 109 FDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168
            D R    +   +G+      P S  + L+ +R  +++ + ++Y+  +P   +E P+   
Sbjct: 51  LDVRLENLEDFSAGLHDIGIHPRSQARILSGIRSFYRFLIMEDYLESDPTELLESPQTGF 110

Query: 169 EGIRPWTKEDMQQFKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
           +     T E++            EG + R   E L   GLR S+ C   +  L      I
Sbjct: 111 KLPEVMTVEEIDLLIGSIDRGTKEGQRNRAILETLYSCGLRVSELCNLKLSELYFEEGFI 170

Query: 225 KTQKTGT-----------IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF 273
           K +  G+           I  + L      L+ + P  ++  FI+N  + ++        
Sbjct: 171 KVEGKGSKQRLVPISPRAIKEIRLYFTDRNLMKIKPGFEDFVFISNFGKNISRIMVFHII 230

Query: 274 KAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           K  A + G+ K  S H  R   AT   + GA    +    G +++   E YT
Sbjct: 231 KELAERIGLKKKISPHTFRHSFATHLLEGGANLRAIQCMLGHESIGTTEIYT 282


>gi|218442353|ref|YP_002380677.1| integrase family protein [Cyanothece sp. PCC 7424]
 gi|218175457|gb|ACK74184.1| integrase family protein [Cyanothece sp. PCC 7424]
          Length = 273

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 52/237 (21%), Positives = 98/237 (41%), Gaps = 12/237 (5%)

Query: 93  ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQ 150
           IS++ +  Q +   G    R +T   +   V     T  P +    + +++ LF +A R 
Sbjct: 27  ISYQCHIKQFLEFVGK-PLRDVTLDDLSLWVNRLNLTYQPVTVANKILTVKSLFSFACRV 85

Query: 151 EYVAINPCLSVERPKRK-TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDS 209
            Y+ +N    ++ PK K T   R   K ++++  +  +   +  +    +   GLR S+ 
Sbjct: 86  GYLTVNVGSFIKSPKLKDTLAERILEKAEVKRLINA-TPNERDSVLLSLMYGCGLRVSEV 144

Query: 210 CRAGVQHLQNNIFSI--KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT 267
           C      L+N   ++  K  KT  +I   +P      L   P   E  F++    ++  T
Sbjct: 145 CGLNWSDLRNGKATVFGKGAKTRVVI---IPPNLWDRLMQLPRDGEAVFMSRRGNRLERT 201

Query: 268 QFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
                 K    K+GV++  S+H +R   A+ + +AG     L  + G   ++  E Y
Sbjct: 202 YIHKMIKECCHKSGVSEKASSHWLRHSHASHAVEAGCNLRLLQQSLGHSKLETTEKY 258


>gi|119505219|ref|ZP_01627294.1| site-specific tyrosine recombinase XerD [marine gamma
           proteobacterium HTCC2080]
 gi|119458910|gb|EAW40010.1| site-specific tyrosine recombinase XerD [marine gamma
           proteobacterium HTCC2080]
          Length = 282

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 50/239 (20%), Positives = 98/239 (41%), Gaps = 65/239 (27%)

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           +P S+ +FL++ R  ++WA+R+ ++  +P L +E PK+     +  ++ D+++       
Sbjct: 53  SPRSSARFLSAARSFYRWALREGHIVEDPTLRIESPKQGRPLPKSLSETDVERLLG---- 108

Query: 189 GSQPRLAFEF-------LLYS-GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
                LA EF       +LY+ GLR S+            +  ++ ++ G      L  G
Sbjct: 109 APDLELALEFRDRTMLEMLYACGLRVSE------------LVGLQVEQVG------LNQG 150

Query: 241 FMKLLA------MTPIGKE-----------------------TFFINNDKQKMNATQFSI 271
            +++L       + P+G+E                         F +N  ++M  T+ + 
Sbjct: 151 IVRVLGKGGKERLVPMGEEALDWLIQYMRGPRIELLKGQSSNVLFPSNRSREM--TRQTF 208

Query: 272 WFKAK--ATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           W++ K    +AG+    S H +R   AT   + GA    +    G   +   + YT  A
Sbjct: 209 WYRIKLYGERAGIQSHLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA 267


>gi|225852955|ref|YP_002733188.1| phage integrase [Brucella melitensis ATCC 23457]
 gi|256263566|ref|ZP_05466098.1| phage integrase [Brucella melitensis bv. 2 str. 63/9]
 gi|225641320|gb|ACO01234.1| phage integrase [Brucella melitensis ATCC 23457]
 gi|263093614|gb|EEZ17619.1| phage integrase [Brucella melitensis bv. 2 str. 63/9]
          Length = 164

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 33/137 (24%), Positives = 60/137 (43%), Gaps = 2/137 (1%)

Query: 205 RCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM 264
           RCS +     +    + F ++  KTG  + + +     ++L  TP   ET  +    +  
Sbjct: 21  RCSKTVFLDGEAKSVDGFELRQGKTGKRLFLPITPILSEVLEATPRQGETVLVTAYGEPF 80

Query: 265 NATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           +    +         A + K  + HG+RK    I A+ GA+  ++M T+G   +  AE Y
Sbjct: 81  SPKSLTGRMADWTASAKLPKGFTLHGLRKTLGKILAEGGASTRQIMDTFGHDDIAHAELY 140

Query: 323 TKGADRIRLGIKNSRRI 339
           T+ A++ RL      R+
Sbjct: 141 TREAEQARLATDGMSRV 157


>gi|291615189|ref|YP_003525346.1| tyrosine recombinase XerD [Sideroxydans lithotrophicus ES-1]
 gi|291585301|gb|ADE12959.1| tyrosine recombinase XerD [Sideroxydans lithotrophicus ES-1]
          Length = 303

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 51/226 (22%), Positives = 91/226 (40%), Gaps = 20/226 (8%)

Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
           H+ SG +++  + S AI   +S++ LF++ +RQ  +  +P L +  PK      +  T+E
Sbjct: 66  HLVSGEKAKATSTSRAI---SSLKRLFRYLLRQNKITADPTLQIATPKLPRSLPKSLTEE 122

Query: 178 DMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI- 232
           D++   +        G + R   E L  SGLR S+     V  +  ++   +    G+  
Sbjct: 123 DVELLLNAPDVDTPLGMRDRTMLEVLYASGLRVSELVGLSVAQVSLDMGVTRVMGKGSKE 182

Query: 233 ----ITVELPDGFMKLLA------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
               +  E  D   + LA      +     +  F+    + M    F    K  A + G+
Sbjct: 183 RLVPLGEEALDWVKRYLAEARPALLAGQVADALFVTQRGEGMTRQMFWYLIKKHAKEGGL 242

Query: 283 NK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           +K  S H +R   AT   + GA    +    G   +   + YT  A
Sbjct: 243 HKPLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTHVA 288


>gi|297584490|ref|YP_003700270.1| tyrosine recombinase XerD [Bacillus selenitireducens MLS10]
 gi|297142947|gb|ADH99704.1| tyrosine recombinase XerD [Bacillus selenitireducens MLS10]
          Length = 296

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 54/241 (22%), Positives = 109/241 (45%), Gaps = 28/241 (11%)

Query: 107 GDFDYRKITTKHIRSGVE--SRKHTPSSAI-QFLTSMRVLFKWAVRQEYVAINPCLSVER 163
           G F ++ +  KH+   ++  ++    SS+I + L++++ L  + + ++ +  NP + +ER
Sbjct: 42  GIFSWKDVNKKHVLHYLQWMNQSGKASSSISRTLSAIKSLHVFLMLEKEMDENPAVHIER 101

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWS--EGSQP----RLAFEFLLYS-GLRCSDSCRAGVQH 216
           P++    I P T   + + ++ +S  EG++P     +A   +LYS G+R S+ C   ++ 
Sbjct: 102 PRKP--AILPKTLA-ISEVEALFSAAEGNRPIDIRTVAMLEVLYSTGMRVSELCALELKD 158

Query: 217 LQNNIFSIKTQKTGTIITVELPDG------------FMKLLAMTPIGKETFFINNDKQKM 264
           L   +  +K    G    + +P G              + + M        F+N+   ++
Sbjct: 159 LNLEMGFVKCTGKGNTERI-IPLGEFATEAIRIYLDHARPVMMKDKEHHDLFVNHHGHRI 217

Query: 265 NATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           +   F    ++ ATKAG+ K  S H +R   AT   + GA    +    G   +   + Y
Sbjct: 218 SRQGFWKLIRSLATKAGIQKEISPHTLRHSFATHLLENGADLRSVQEMLGHSDISTTQIY 277

Query: 323 T 323
           T
Sbjct: 278 T 278


>gi|283458210|ref|YP_003362828.1| integrase [Rothia mucilaginosa DY-18]
 gi|283134243|dbj|BAI65008.1| integrase [Rothia mucilaginosa DY-18]
          Length = 422

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 66/278 (23%), Positives = 105/278 (37%), Gaps = 38/278 (13%)

Query: 79  RKSAHWGSLAVNSRIS-FESYFDQIIRKSGDFDYRKITTKHIRSGVES---RKHTPSSAI 134
           R   H     + S IS  E +F  + R+ G      I    IR  + S   R+   S+ +
Sbjct: 132 RYEKHRSEETIRSYISDLEGFFGYMARR-GVRHLDSIDASLIREWLGSLHLRQAARSTVV 190

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE--GSQP 192
           +  +++R  F WA  +E V  NP   +  PKR++      ++E M Q  +   E     P
Sbjct: 191 RRGSTLRTFFTWAQEEELVHANPTRGMRTPKRESHLPPVLSREQMNQLLTTLQERRAQDP 250

Query: 193 RLA--------FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
           R A         E L  SG+R S+     +Q +     +++    G    V +P G   L
Sbjct: 251 RDARLLRLEAVVEVLYASGMRISELTGLDLQSVDRANKTVRVLGKGNKERV-VPLGTPAL 309

Query: 245 LAMT-----------PIGKE---TFFINNDKQKMNATQF-----SIWFKAKATKAGVNKS 285
            A+            P G +     FI     + NA Q       +    + T+A     
Sbjct: 310 KALNRWVSYGRPQWIPEGSQGVTALFIGPRGGRANARQIREDLTRLLRTVENTQA---SG 366

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           AH +R  +AT   D GA    +    G  ++   + YT
Sbjct: 367 AHVLRHSAATHLVDGGADIRSVQELLGHSSLATTQIYT 404


>gi|260577125|ref|ZP_05845103.1| integrase family protein [Rhodobacter sp. SW2]
 gi|259020703|gb|EEW24021.1| integrase family protein [Rhodobacter sp. SW2]
          Length = 358

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 57/228 (25%), Positives = 94/228 (41%), Gaps = 32/228 (14%)

Query: 19  GKIIYYFRKG-----HGRRIRLP-YPHESTFIPAYMSALT--GSTPKREYINSPRKKPTT 70
           G+  +Y+++G      G RIRLP  P    F  A   A    G TP             T
Sbjct: 17  GRDYFYYQEGRGTPHQGERIRLPDKPQTPEFWNAVRQAQGTFGPTPT-----------DT 65

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVES- 125
           +  LI  Y  +  W +L        +  + + ++ S    GD   R +  KH+ + +   
Sbjct: 66  VGALIDAYEGA--WPTLQRKLSKGTQEQYRRNLKPSRKAWGDLPARDLRPKHVDALIRKI 123

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
               P +A   L +++ L +WA    + +A +P   V R   K  G  PWT+  +   + 
Sbjct: 124 GAERPGAANNVLDALKALCRWANGPVDLLAHDPTKGVHR-FEKGAGHEPWTEAQLAFAEQ 182

Query: 185 FWSEGSQPRLAFEFL-LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
            ++    P   + FL  Y+G R SD  R     + +  FS++ +KTG 
Sbjct: 183 TFT---GPLRRYYFLSRYTGQRISDVVRLNPGDVDDGGFSLRQKKTGV 227


>gi|297621664|ref|YP_003709801.1| Site-specific tyrosine recombinase XerC [Waddlia chondrophila WSU
           86-1044]
 gi|297376965|gb|ADI38795.1| Site-specific tyrosine recombinase XerC [Waddlia chondrophila WSU
           86-1044]
          Length = 301

 Score = 45.4 bits (106), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 31/121 (25%), Positives = 55/121 (45%), Gaps = 7/121 (5%)

Query: 95  FESYFDQIIRKSGDFDYRKITTKHIR---SGVESRKHTPSSAIQFLTSMRVLFKWAVRQE 151
           F+ + +Q  +   DF   +I  + IR   + + S+  +  + ++ L+S+R  FKWA   +
Sbjct: 36  FKQHLEQEWQSDEDFALNRIERRQIRGFLAMMNSKGASKRTILRRLSSLRTFFKWAFANQ 95

Query: 152 YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLAFEFLLYSGLRCS 207
            +  NP   +E PK +     P +   ++   S        GS+ R   E    SGLR S
Sbjct: 96  LITSNPIEEIESPKLEKTIPTPLSYTQVEHLFSLPEIETLLGSRDRCMMELFYSSGLRVS 155

Query: 208 D 208
           +
Sbjct: 156 E 156


>gi|126464099|ref|YP_001045212.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17029]
 gi|126105910|gb|ABN78440.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17029]
          Length = 360

 Score = 45.4 bits (106), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 67/293 (22%), Positives = 110/293 (37%), Gaps = 36/293 (12%)

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121
           + P     TL+ LI+ Y+K+  +  LA  +R  +  +  QI    GD   + +    +R 
Sbjct: 50  DRPAHHDGTLQALITAYQKTPAFTDLAEATRKGYIRHIRQIEADFGDMPVQALADPRVRG 109

Query: 122 GV------ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
                    ++K   S+   F    R+L  WA  +  + +NPC   E+P R   G R   
Sbjct: 110 EFLDWRDRLAQKSKRSADYAFSVLARIL-SWAHDRRKIPVNPC---EKPGRLYTGSRA-- 163

Query: 176 KEDMQQFKSFWSEGSQP----------RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225
                   S W+E              RL F   +++G R +D  +            ++
Sbjct: 164 -------DSIWTEAQIAAFLAAAPRPVRLPFLLAIWTGQRQADILQLTWTAYDGKAIRLR 216

Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKETFFI--NNDKQKMNATQFSIWF-KAKATKAGV 282
             KTG  + + +     + +      + T  I   +  Q   +  F   F KA+A     
Sbjct: 217 QSKTGRHMLIPVAQPLREAMEEARARRRTLTICETSRGQAWTSDGFKTSFGKAQAAARIE 276

Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK---GADRIRLG 332
             + H +R  + T  A AG +  E+ A  G    D     +K   G DR RLG
Sbjct: 277 GVTFHDLRGTAVTFLALAGCSVPEIAALTGHSLKDAEGILSKHYLGRDR-RLG 328


>gi|119477803|ref|ZP_01617926.1| integrase, phage related protein [marine gamma proteobacterium
           HTCC2143]
 gi|119448964|gb|EAW30205.1| integrase, phage related protein [marine gamma proteobacterium
           HTCC2143]
          Length = 325

 Score = 45.1 bits (105), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 42/72 (58%), Gaps = 5/72 (6%)

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
           +  P SA + L  +R +F WAV +E V INPC  V RP ++ +  R  ++ ++   K+ W
Sbjct: 157 QRAPISANRALEIIRKMFNWAVEREIVEINPCWQVSRPSQENKRERALSESEL---KALW 213

Query: 187 S--EGSQPRLAF 196
           +  E ++ +LA+
Sbjct: 214 TILESARCKLAY 225


>gi|218778262|ref|YP_002429580.1| tyrosine recombinase XerC [Desulfatibacillum alkenivorans AK-01]
 gi|218759646|gb|ACL02112.1| tyrosine recombinase XerC [Desulfatibacillum alkenivorans AK-01]
          Length = 315

 Score = 45.1 bits (105), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 60/237 (25%), Positives = 97/237 (40%), Gaps = 27/237 (11%)

Query: 110 DYRKITTKHIRS--GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR- 166
           D  ++    IR   G   +K+  S+  + L+S+R  +++  ++  VA+NP  SV  PKR 
Sbjct: 62  DVERVDNLAIRGYLGFLHKKNEKSTMARKLSSLRSFYRFLEKRGRVAVNPAQSVVTPKRK 121

Query: 167 KTEGIRPWTKEDMQQFKSFWSE---GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223
           KT        E      S   +   G++ R  FE L  +G+R S+   AG+   + N FS
Sbjct: 122 KTVAAHLTVDEAFALLDSILDDSLAGARDRAMFECLYSTGIRVSEL--AGLNMGRVN-FS 178

Query: 224 IKTQKT------GTIITV-----ELPDGFMKLLAM----TPIGKETFFINNDKQKMNATQ 268
            KT +         I+ V     E    +   LA+     P   E  F+N +  ++    
Sbjct: 179 GKTLRVLGKGDKERIVPVGAKALEHIKAYRDRLAVEGPKNP-DPEAVFLNKNGGRLTTRS 237

Query: 269 FSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
                +      G+N+  S HG+R   AT   D GA    +    G  ++     YT
Sbjct: 238 IRRILEKIVRDMGLNRPLSPHGLRHTFATHMLDNGADLRSVQELLGHASISTTGRYT 294


>gi|315122638|ref|YP_004063127.1| hypothetical protein CKC_04450 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313496040|gb|ADR52639.1| hypothetical protein CKC_04450 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 63

 Score = 45.1 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 21/42 (50%), Positives = 28/42 (66%)

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           AHG+RK  ATI A++GA+++ELMA YGW     AE    G +
Sbjct: 22  AHGLRKAGATILANSGASSYELMAMYGWSKSTMAEKMRIGKN 63


>gi|284008636|emb|CBA75253.1| phage integrase [Arsenophonus nasoniae]
          Length = 226

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 74/173 (42%), Gaps = 9/173 (5%)

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           SSA  F  +++ +F  A     +  NP L  + PK K +  R    +     +S   E  
Sbjct: 16  SSASIFRITLKDIFNEAYCLGIINNNPVLPTKSPKVKVQRTRLSLDDFNLILESIDDEAH 75

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF--MKLLAMT 248
              +A +  L +G R SD  +   + L ++   I  QKTG+ I + L      +KL A+ 
Sbjct: 76  WLTIAMKLALVTGQRVSDISKMKYEDLHDDKLWIIQQKTGSKIAIPLTVEIIGIKLSAII 135

Query: 249 PIGKET--FFINNDKQKMNATQFSIWF-----KAKATKAGVNKSAHGVRKFSA 294
            I +    + IN+  +K++  + S  F     K   T  G   S H +R  SA
Sbjct: 136 KINENDSEYIINDAGKKVSIEKISKGFAKLRDKTNLTWEGTPPSFHEIRSLSA 188


>gi|163798313|ref|ZP_02192240.1| putative integrase [alpha proteobacterium BAL199]
 gi|159176400|gb|EDP60988.1| putative integrase [alpha proteobacterium BAL199]
          Length = 285

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 59/293 (20%), Positives = 106/293 (36%), Gaps = 36/293 (12%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE--SRKHTPS 131
           ++  YR+S+ +  LA  ++  +    D + +  G  D   I+T  + + ++  + K    
Sbjct: 1   MVDAYRRSSAFTKLAPRTKRDYHQVLDYLRKPLGAADVDGISTPELATLIDRIAEKRNWR 60

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSV---ERPKRKTEGIRPWTKEDMQQFK----- 183
            A   L  +  +F   + +    +NP   V    RP+      RPWT  +++        
Sbjct: 61  FANYCLAVISRVFSIGILRGKAKVNPATGVPKLTRPREAPAANRPWTDHEIEVVLAAAPA 120

Query: 184 -----------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN---IFSIKTQKT 229
                      +   EG    L        G R + + R G  H  +    +  +  +  
Sbjct: 121 GVALAVGLGAYAGLREGDAIALPMSAYSKVGRRAAITFRPGKTHRADEDPLVLPVHPRLV 180

Query: 230 GTIITVELPDGFMKLLAMT--PIGKETFFINNDKQKMNATQFSIWFKAKAT-KAGVNKSA 286
             I   +  D  + +L M   P   + F             F +  + +A  K G   + 
Sbjct: 181 QLIDNRKAGDSTVMVLGMRGRPYTSDGF---------RTMLFRVIAQLEAAGKVGEGLTF 231

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
           HG+R   AT  +D GA    +    GW +   A+ YTK  DR +      R+I
Sbjct: 232 HGLRHTVATKLSDLGADNETIADVLGWSSTAMAKRYTKTRDRTKRAAAGLRQI 284


>gi|260427159|ref|ZP_05781138.1| phage integrase family protein [Citreicella sp. SE45]
 gi|260421651|gb|EEX14902.1| phage integrase family protein [Citreicella sp. SE45]
          Length = 296

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 52/253 (20%), Positives = 98/253 (38%), Gaps = 19/253 (7%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           +I+E +++  W + +   R   E     +  K G  D   +  KH+   +++  H    A
Sbjct: 15  IIAELKQTEKWANFSPRYRKDLEPILLYLDEKIGSKDVSLLRPKHVYEAMDANAHRVRFA 74

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVER---PKRKTEGIRPWTKEDMQQFKSFWSEGS 190
                ++ +L + A R+ +   NP   +ER   PK + +    W  + +Q+ +    EG+
Sbjct: 75  NYIPVAITLLARLARRKGWRTDNPAEGIERLAVPKERQKPHYAWPDDAVQKMR---EEGA 131

Query: 191 Q-PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP---------DG 240
           + P+L  E  + S  R  D               +   KTGT  +++LP         D 
Sbjct: 132 ELPKLILEIGIGSVQRPGDWVGFTWGDYDGESLRLVQNKTGT--SLKLPCTEELKQKLDA 189

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISAD 299
               L   P+ +       D   M+    +   + +  + G++K   H +R       A 
Sbjct: 190 AKASLKAPPLPERPILARADGTSMSYYMLARIMREERARLGLSKYDLHALRYRGVKELAY 249

Query: 300 AGATAHELMATYG 312
           AG T  E+ +  G
Sbjct: 250 AGCTDDEIASYSG 262


>gi|329929830|ref|ZP_08283506.1| phage integrase, N-terminal SAM domain protein [Paenibacillus sp.
           HGF5]
 gi|328935808|gb|EGG32269.1| phage integrase, N-terminal SAM domain protein [Paenibacillus sp.
           HGF5]
          Length = 294

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 38/191 (19%), Positives = 83/191 (43%), Gaps = 17/191 (8%)

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KSFW 186
           SS ++   S+R  F++ VRQ  +  +P   ++ PK + +  +  T E + +      S  
Sbjct: 68  SSLLRCTASLRSFFQYLVRQAVIVQDPTQLLDNPKPERKPPKSLTVEQVDKLLSAPDSGT 127

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
            +G++ +   E L  SG++ S+     V  +Q  +  ++   +G         G  ++L 
Sbjct: 128 PQGARDKAMLELLYASGIKVSELVNLSVHDIQLEMRFLRCAVSG---------GKERILP 178

Query: 247 MTPIGKET--FFINN--DKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGA 302
           +TPI  E+   ++ +  DK   +A + +++  +  T+         ++K+      D   
Sbjct: 179 ITPIAAESVALYVRDMRDKLMRDAGEDALFLNSLGTRLTRQGFWKIIKKYGKLADIDEDI 238

Query: 303 TAHELMATYGW 313
           T H L  ++  
Sbjct: 239 TPHTLRHSFAM 249


>gi|270291303|ref|ZP_06197525.1| tyrosine recombinase XerD [Pediococcus acidilactici 7_4]
 gi|270280149|gb|EFA25985.1| tyrosine recombinase XerD [Pediococcus acidilactici 7_4]
          Length = 295

 Score = 45.1 bits (105), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 45/212 (21%), Positives = 88/212 (41%), Gaps = 21/212 (9%)

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-- 188
           SS+I  ++S+R  FK+ +  + +  NP  +++ PKR        T E++++         
Sbjct: 68  SSSIHTISSLRKFFKYLLLNDQIQTNPMANIDPPKRAQHLPSVLTTEEVERLLKVPDTSK 127

Query: 189 --GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT--------IITVELP 238
             G + R   E +  +GLR S+     +  L   +  I+T   G          + ++  
Sbjct: 128 PLGIRDRAILEVMYATGLRVSELIALNLNELHLEMGLIETVGKGNKQRIIPIGDVAIQWL 187

Query: 239 DGFMKLLAMTPIGKETF---FINNDKQKMNATQFSIW--FKAKATKAGVNKSA--HGVRK 291
           + ++       +G + +   F+N     +  T+  +W   KA+  KAG+ K+   H +R 
Sbjct: 188 ERYINGPRRALLGAKRYNEIFLNQHGHPL--TRQGVWKNLKAQVQKAGIKKNITPHTLRH 245

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYT 323
             AT   + GA    +    G   +   + YT
Sbjct: 246 SFATHLLENGADLRIVQELLGHADISTTQIYT 277


>gi|161619421|ref|YP_001593308.1| phage integrase [Brucella canis ATCC 23365]
 gi|254704727|ref|ZP_05166555.1| phage integrase [Brucella suis bv. 3 str. 686]
 gi|260566026|ref|ZP_05836496.1| phage integrase [Brucella suis bv. 4 str. 40]
 gi|261755423|ref|ZP_05999132.1| integrase/recombinase [Brucella suis bv. 3 str. 686]
 gi|161336232|gb|ABX62537.1| phage integrase [Brucella canis ATCC 23365]
 gi|260155544|gb|EEW90624.1| phage integrase [Brucella suis bv. 4 str. 40]
 gi|261745176|gb|EEY33102.1| integrase/recombinase [Brucella suis bv. 3 str. 686]
          Length = 164

 Score = 45.1 bits (105), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 61/139 (43%), Gaps = 6/139 (4%)

Query: 205 RCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ-- 262
           RCS +     +    + F ++  KTG  + + +     ++L  TP   ET  +    +  
Sbjct: 21  RCSKTVFLDGEAKSVDGFELRQGKTGKRLLLPITPILSEVLEATPRQGETVLVTAYGEPF 80

Query: 263 --KMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
             K    + + W  +     G   + HG+RK    I A+ GA+  ++M T G   + +AE
Sbjct: 81  SPKSLTGRMADWTPSAKLPKGF--TLHGLRKTLGKILAEGGASTRQIMDTLGHDDIARAE 138

Query: 321 TYTKGADRIRLGIKNSRRI 339
            YT+ A++ RL      R+
Sbjct: 139 LYTREAEQARLATDGMSRV 157


>gi|325268524|ref|ZP_08135154.1| integrase/recombinase XerD [Prevotella multiformis DSM 16608]
 gi|324989052|gb|EGC21005.1| integrase/recombinase XerD [Prevotella multiformis DSM 16608]
          Length = 310

 Score = 45.1 bits (105), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 48/210 (22%), Positives = 86/210 (40%), Gaps = 19/210 (9%)

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT---EGIRPWTKEDMQQFKSF--W 186
           S  + L+ +R  +++ V   Y+  +P   +E PK+     E +     + ++Q      W
Sbjct: 74  SLARILSGVRQFYRFLVLDGYMEADPTELLESPKQPDHLPEVLSTAEVDLLEQAVDLTKW 133

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---IITV------EL 237
            EG + R   E L   GLR S+     +  L      ++    G+   ++ +      EL
Sbjct: 134 -EGHRNRAIIEVLFSCGLRVSELTHLKLSDLYREEQYVRVMGKGSKERLVPISPRALDEL 192

Query: 238 PDGFM--KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFS 293
              F    ++ + P  ++  F+N     +  T   I  K  A +AG+ K  S H +R   
Sbjct: 193 DCWFADRNVMKIKPGEEDYVFLNRRGHHLTRTMILIMIKRYAAEAGIRKTISPHTLRHSF 252

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYT 323
           AT   + GA    + A  G +++   E YT
Sbjct: 253 ATSLLEGGADLRAIQAMLGHESIGTTEIYT 282


>gi|154491730|ref|ZP_02031356.1| hypothetical protein PARMER_01346 [Parabacteroides merdae ATCC
           43184]
 gi|154087971|gb|EDN87016.1| hypothetical protein PARMER_01346 [Parabacteroides merdae ATCC
           43184]
          Length = 302

 Score = 45.1 bits (105), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 74/144 (51%), Gaps = 21/144 (14%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES---RKHTPSS 132
           SEY  +A++  L       FE +  +  +K G F   ++ T  +R+ + S    K +P S
Sbjct: 19  SEYTINAYFKDLQ-----QFEDFVKE--KKEGIFVPEEVDTDIVRNWIISLLDNKISPVS 71

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE-DMQQF-------KS 184
             + L+S++  FK+ ++Q +V++NP   V  PK K + +  + KE DM++        + 
Sbjct: 72  VNRKLSSLKSFFKFLMKQGFVSVNPLRFVTGPKTK-KPLPTFVKEKDMEELLDGDGFDED 130

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSD 208
           F  EG + RL  E L  +G+R S+
Sbjct: 131 F--EGVRDRLVLEMLYDTGVRRSE 152


>gi|238790806|ref|ZP_04634564.1| Phage integrase [Yersinia frederiksenii ATCC 33641]
 gi|238721121|gb|EEQ12803.1| Phage integrase [Yersinia frederiksenii ATCC 33641]
          Length = 336

 Score = 45.1 bits (105), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 83/339 (24%), Positives = 140/339 (41%), Gaps = 47/339 (13%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
           +PP     RT  G+  + F+   G  IRL     S   PA + A        E + + ++
Sbjct: 13  MPP-----RTCRGRSAFEFKPKLGGTIRLCGFDAS---PAQVWAAY------EALINDKQ 58

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS----- 121
                 WL+S +  SA +  LAV ++  +  Y  +++   G+     I  +HIR      
Sbjct: 59  NENVFNWLVSRFFLSADFIELAVETQKDYRKYAVKVLSVFGEVHPDAIKPEHIRKYMDKR 118

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
           GV+SR  T ++  +  TS   +F+WA  +  V +NPC  V++ K +T   R  T ++   
Sbjct: 119 GVKSR--TQANREKAFTSR--VFRWAYERGMVKMNPCKGVKQFK-ETSRTRYITNKEYDA 173

Query: 182 FKSFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELP 238
                 + S P  ++A E       R +D        L ++   I+  KTG + I    P
Sbjct: 174 L----YQVSPPVVQVAMELAYLCCARQADILGMKKNQLIDDGILIQQSKTGISQIKAWGP 229

Query: 239 --DGFMKLLAMTPI--GKETFFINNDKQKMNATQ---FSIWFKAKAT------KAGVNKS 285
                +KL +  P+  G  + F+ + +     T+    S W KAKA       +   N +
Sbjct: 230 RLTAVIKLASQLPLNRGMSSIFVIHQQSGARYTRDGFNSRWLKAKAEAKEKYPELEFNFT 289

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            H ++   A   +D   + +E  A  G K   Q   Y +
Sbjct: 290 FHDLK---AKGISDLSGSLYEKQAISGHKNAAQTARYDR 325


>gi|331673529|ref|ZP_08374292.1| putative integrase for prophage [Escherichia coli TA280]
 gi|331068802|gb|EGI40194.1| putative integrase for prophage [Escherichia coli TA280]
          Length = 341

 Score = 44.7 bits (104), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 46/197 (23%), Positives = 80/197 (40%), Gaps = 6/197 (3%)

Query: 36  PYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISF 95
           P   ES  + A    L     K E   + R +  T   L  ++  SA++  L+  ++  +
Sbjct: 28  PTSRESVTLTAIKDGLAALWKKYEETVNNRDRAMTFGRLWEKFLASAYYSDLSPRTQKDY 87

Query: 96  ESYFDQIIRKSGDFDYRKITTKHIRSGVESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVA 154
             +  +++   G      I  +HIR  ++ R + + + A    +SM  ++ W   + YV 
Sbjct: 88  LQHQKKLLAVFGKVPADSIKPEHIRRYMDKRGEQSKTQANHEKSSMSRVYSWGYERGYVK 147

Query: 155 INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR-LAFEFLLYSGLRCSDSCRAG 213
            NPC  V + K K        KE    +++  S  S P  +A E       R SD     
Sbjct: 148 ANPCAGVSKFKAKNRERYVTDKE----YQAVLSVASPPVFIAMEIAYLCAARISDVLSLK 203

Query: 214 VQHLQNNIFSIKTQKTG 230
            + + N+   I+  KTG
Sbjct: 204 WEQIGNDGIFIQQGKTG 220


>gi|317055389|ref|YP_004103856.1| integrase family protein [Ruminococcus albus 7]
 gi|315447658|gb|ADU21222.1| integrase family protein [Ruminococcus albus 7]
          Length = 393

 Score = 44.7 bits (104), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 63/135 (46%), Gaps = 18/135 (13%)

Query: 107 GDFDYRKITTKHIRSGVES-----------RKHTPSSAIQFLTSMRVLFKWAVRQEYVAI 155
           G     KIT +H++  V S           +   P +    L+ +  +F +AVR + V+ 
Sbjct: 105 GHLRIDKITARHLQGFVNSLAKEGANEKTGKPLAPKTIRHNLSFISDVFSYAVRMDLVSD 164

Query: 156 NPCLSVERPKRKTEGIRPWTKEDMQQ-FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGV 214
           NPC  V  PK + +    +++E++ Q   +   E ++ R  F  + YSG R S+    G+
Sbjct: 165 NPCRKVTIPKGEVKEKPIYSQEEIAQLLTAINGEDTKYRAFFYLIAYSGFRRSEML--GL 222

Query: 215 Q----HLQNNIFSIK 225
           +      +NNI SIK
Sbjct: 223 EWKDIDFENNIISIK 237


>gi|270308039|ref|YP_003330097.1| site-specific recombinase [Dehalococcoides sp. VS]
 gi|270153931|gb|ACZ61769.1| site-specific recombinase [Dehalococcoides sp. VS]
          Length = 307

 Score = 44.7 bits (104), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 44/204 (21%), Positives = 84/204 (41%), Gaps = 17/204 (8%)

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KSFWSEGSQP 192
           L+++R  +++ +R+  +  NP L+   P+         T  ++ +      S   +G + 
Sbjct: 74  LSAVRSFYRYLMREGLIQKNPTLNASSPRLDKRLPEFLTTAEVSKLLRMPDSSTPQGLRD 133

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---IITVELP-----DGFMKL 244
           +   E L  SGLR S+  +  +++L  +   I+    G+   I+ + LP       ++ L
Sbjct: 134 KAFMELLYASGLRVSELVKLDIENLDLHSHQIRVWGKGSKERIVLMGLPAIQSIQTYLNL 193

Query: 245 LAMTPIGKET---FFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISAD 299
                 GK      F+N +  +++A  F       A +AG+ K    H +R   AT   D
Sbjct: 194 GRPLLKGKRNTPALFLNPNGGRLSARSFQERLDKLAHQAGIEKHVHPHMLRHTFATHLLD 253

Query: 300 AGATAHELMATYGWKTVDQAETYT 323
            GA    +    G   +   + YT
Sbjct: 254 GGADLRVVQELLGHSNLSTTQIYT 277


>gi|23502343|ref|NP_698470.1| phage integrase family site specific recombinase [Brucella suis
           1330]
 gi|23348323|gb|AAN30385.1| site-specific recombinase, phage integrase family [Brucella suis
           1330]
          Length = 164

 Score = 44.7 bits (104), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 60/139 (43%), Gaps = 6/139 (4%)

Query: 205 RCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ-- 262
           RCS +     +    + F ++  KTG  + + +     ++L  TP   ET  +    +  
Sbjct: 21  RCSKTVFLDGEAKSVDGFELRQGKTGKRLLLPITPILSEVLEATPRQGETVLVTAYGEPF 80

Query: 263 --KMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
             K    + + W  +     G   + HG+RK    I A+ GA+  ++M T G   +  AE
Sbjct: 81  SPKSLTGRMADWTPSAKLPKGF--TLHGLRKTLGKILAEGGASTRQIMDTLGHDDIAHAE 138

Query: 321 TYTKGADRIRLGIKNSRRI 339
            YT+ A++ RL      R+
Sbjct: 139 LYTREAEQARLATDGMSRV 157


>gi|295695953|ref|YP_003589191.1| tyrosine recombinase XerD [Bacillus tusciae DSM 2912]
 gi|295411555|gb|ADG06047.1| tyrosine recombinase XerD [Bacillus tusciae DSM 2912]
          Length = 295

 Score = 44.7 bits (104), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 49/248 (19%), Positives = 98/248 (39%), Gaps = 26/248 (10%)

Query: 99  FDQIIRKSGDFDYRKITTKHI---RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI 155
           F   ++++G  D+ +   +HI    + ++     P++  + + S+R  +++  R+  + +
Sbjct: 33  FSDFLQRTGCGDWPETGRRHIVAYLAHLQKLGRAPATVSRHMASLRSFYQFLSREGLIEV 92

Query: 156 NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP-----RLAFEFLLYSGLRCSDSC 210
           +P   ++ PK      R    E++++  +   EG  P     R   E L  +G+R S+  
Sbjct: 93  DPTGQLDSPKADKRLPRVLNVEEVERLLA-APEGLTPMALRDRAMLEMLYATGVRVSELV 151

Query: 211 RAGVQHLQNNIFSIKTQKTGT-------------IITVELPDGFMKLLAMTPIGKETFFI 257
              V  +  N+  +K    G+              +   L  G   LL     G    F+
Sbjct: 152 SLNVTDVNLNMGYVKCYGKGSKERIVPLGSAALEAVHAYLTRGRAGLLKNGDPG--ALFV 209

Query: 258 NNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKT 315
           N+  +++    F    K  A  AG+ K+   H +R   AT   + GA    +    G   
Sbjct: 210 NHQGKRLTRQGFWKILKKYAQTAGIQKAITPHTLRHSFATHLLENGADLRAVQEMLGHAD 269

Query: 316 VDQAETYT 323
           +   + YT
Sbjct: 270 ISTTQIYT 277


>gi|319655065|ref|ZP_08009133.1| hypothetical protein HMPREF1013_05756 [Bacillus sp. 2_A_57_CT2]
 gi|317393243|gb|EFV74013.1| hypothetical protein HMPREF1013_05756 [Bacillus sp. 2_A_57_CT2]
          Length = 279

 Score = 44.7 bits (104), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 50/242 (20%), Positives = 99/242 (40%), Gaps = 17/242 (7%)

Query: 102 IIRKSGDFDYRKITTKHIR-----SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAIN 156
           +I+  GD     ITT+ I+        E +  +    I+F+ S   LFKWA  ++YV++N
Sbjct: 34  LIKYFGDIKITDITTESIKLYLGEVAAELKASSLCHRIRFIKS---LFKWAQEEKYVSVN 90

Query: 157 PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC---RAG 213
           P  +++ PK ++   +  T+E+++  +       +  L FEF+  +G R  +     R  
Sbjct: 91  PVSTIKEPKPESRIPKFLTEEEIELLREACKTTFEKAL-FEFMYSTGCRIGEVVKLDRHS 149

Query: 214 VQHLQNN--IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFIN-NDKQKMNATQFS 270
           +   + +  +F    ++              + L      ++  F+      +M+  Q  
Sbjct: 150 INMAEQSVIVFGKGKKEREVYFNTRCSIWLKRYLEERYDDQQALFVTIRAPHRMSIAQMR 209

Query: 271 IWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
              K  + +AG+NK    H +R   AT   + GA    +    G +  +    Y   +  
Sbjct: 210 YVIKQISKRAGINKCIHPHQLRHSYATTLINNGAPLEVIQNLMGHEKSETTRVYAYLSGH 269

Query: 329 IR 330
           +R
Sbjct: 270 LR 271


>gi|325860159|ref|ZP_08173284.1| putative tyrosine recombinase XerD [Prevotella denticola CRIS
           18C-A]
 gi|325482246|gb|EGC85254.1| putative tyrosine recombinase XerD [Prevotella denticola CRIS
           18C-A]
          Length = 315

 Score = 44.7 bits (104), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 48/210 (22%), Positives = 86/210 (40%), Gaps = 19/210 (9%)

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT---EGIRPWTKEDMQQFKSF--W 186
           S  + L+ +R  +++ V   Y+  +P   +E PK+     E +     + ++Q      W
Sbjct: 74  SLARILSGVRQFYRFLVLDGYMEADPTELLESPKQPDHLPEVLSTAEVDLLEQAVDLTKW 133

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---IITV------EL 237
            EG + R   E L   GLR S+     +  L      ++    G+   ++ +      EL
Sbjct: 134 -EGHRNRAIIEVLFSCGLRVSELTHLKLSDLYREEQFVRVMGKGSKERLVPISPRALDEL 192

Query: 238 PDGFM--KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFS 293
              F    ++ + P  ++  F+N     +  T   I  K  A +AG+ K  S H +R   
Sbjct: 193 DCWFADRNVMKIKPGEEDYVFLNRRGHHLTRTMILIMIKRYAVEAGIRKTISPHTLRHSF 252

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYT 323
           AT   + GA    + A  G +++   E YT
Sbjct: 253 ATSLLEGGADLRAIQAMLGHESIGTTEIYT 282


>gi|327312733|ref|YP_004328170.1| putative tyrosine recombinase XerD [Prevotella denticola F0289]
 gi|326945335|gb|AEA21220.1| putative tyrosine recombinase XerD [Prevotella denticola F0289]
          Length = 315

 Score = 44.7 bits (104), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 87/210 (41%), Gaps = 19/210 (9%)

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT---EGIRPWTKEDMQQFKSF--W 186
           S  + L+S+R  +++ V   Y+  +P   +E PK+     E +     + ++Q      W
Sbjct: 74  SLARILSSVRQFYRFLVLDGYMEADPTELLESPKQPDHLPEVLSTAEVDLLEQAVDLTKW 133

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---IITV------EL 237
            EG + R   E L   GLR S+     +  L  +   ++    G+   ++ +      EL
Sbjct: 134 -EGHRNRAIIEVLFSCGLRVSELTHLKLSDLYRDEQFVRVMGKGSKERLVPISPRALDEL 192

Query: 238 PDGFMKLLAM-TPIGKETF-FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFS 293
              F     M    G+E + F+N     +  T   I  K  A +AG+ K  S H +R   
Sbjct: 193 DCWFADRNVMKIKSGEEDYVFLNRRGHHLTRTMILIMIKRYAVEAGIRKTISPHTLRHSF 252

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYT 323
           AT   + GA    + A  G +++   E YT
Sbjct: 253 ATSLLEGGADLRAIQAMLGHESIGTTEIYT 282


>gi|160891605|ref|ZP_02072608.1| hypothetical protein BACUNI_04058 [Bacteroides uniformis ATCC 8492]
 gi|317478317|ref|ZP_07937481.1| tyrosine recombinase XerD [Bacteroides sp. 4_1_36]
 gi|156859012|gb|EDO52443.1| hypothetical protein BACUNI_04058 [Bacteroides uniformis ATCC 8492]
 gi|316905476|gb|EFV27266.1| tyrosine recombinase XerD [Bacteroides sp. 4_1_36]
          Length = 317

 Score = 44.7 bits (104), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 56/233 (24%), Positives = 96/233 (41%), Gaps = 19/233 (8%)

Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
           +H  SG+      P S  + L+ ++  F + V  +Y+  +P   +E PK   +     T 
Sbjct: 65  QHFASGLHDIGIHPRSQARILSGIKSFFHFLVMADYLEGDPSELLEGPKIGFKLPEVLTV 124

Query: 177 EDMQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT- 231
           E++ +  S      +EG + R   E L   GLR S+ C   +  L  +   IK +  G+ 
Sbjct: 125 EEIDRIISAIDLGTNEGQRNRAILETLYSCGLRVSELCNLKISDLYFDEGFIKVEGKGSK 184

Query: 232 --IITV------ELPDGFMKLLAMTPIGK---ETFFINNDKQKMNATQFSIWFKAKATKA 280
             ++ +      E+ + F+       I K   +  F+    + ++        K  A KA
Sbjct: 185 QRLVPISSRAIKEIRNWFVDRNGGWKIKKDFEDYVFLARWGKNISRIMVFHLIKELAKKA 244

Query: 281 GVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           G+ K  S H  R   AT   + GA    + +  G +++   E YT   DR RL
Sbjct: 245 GITKNISPHTFRHSFATHLLEGGANLRAIQSMLGHESIATTEIYTH-IDRHRL 296


>gi|190410733|ref|YP_001966071.1| putative integrase [Thermus sp. 4C]
 gi|148608607|gb|ABQ95627.1| putative integrase [Thermus sp. 4C]
          Length = 386

 Score = 44.7 bits (104), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 52/239 (21%), Positives = 99/239 (41%), Gaps = 32/239 (13%)

Query: 111 YRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI--NPCLSVERPKRKT 168
           + ++ ++HIR+ + SR+ +P  A + L S+R LF++    E + +  +P   V+RPK   
Sbjct: 127 FEEVGSQHIRAFLASREVSPHRAGRVLASLRKLFRYLAEVEGLPLLKDPTEGVKRPKLPR 186

Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPRLAFE------FLLYSGLRCSDSCRAGVQHL--QNN 220
                 T  ++ +      +   PR+A        FL  +GLR S++       L  Q+ 
Sbjct: 187 RLPVYLTPPEVARLLQAAYQNRSPRVALRDWALLAFLYGTGLRLSEALALTYADLTYQDG 246

Query: 221 I-FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF--FINNDKQKMNATQFSIWFKAKA 277
           I  +I+ Q  G         G  +++ ++P  +     ++ +   + + T   IW     
Sbjct: 247 IPHAIRVQGKG---------GKERVVVLSPTAQRALHQWLKHRNLEGHPTSPYIWSHTTG 297

Query: 278 TKAGVNKSAHGVRKFSATISADAGA------TAHELMATYGWKTVDQAETYTKGADRIR 330
              G   SA  V      ++  AG       T H+L  +Y    V+      +G D ++
Sbjct: 298 PNRGKPFSARAVEAMVKRVARRAGLKDWRRITPHKLRHSYASALVEAG----RGIDEVK 352


>gi|257884210|ref|ZP_05663863.1| integrase [Enterococcus faecium 1,231,501]
 gi|257820048|gb|EEV47196.1| integrase [Enterococcus faecium 1,231,501]
          Length = 380

 Score = 44.7 bits (104), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 84/180 (46%), Gaps = 20/180 (11%)

Query: 59  EYINS--PRKKPTTLK-----WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY 111
           EY N+   ++KP T +     W+ +EY+++    +L    RI    + + ++ + GD   
Sbjct: 55  EYENNLLKKEKPKTYRDVYDLWM-TEYKRTVRGSTLLKTERI----FKNHVLEELGDIYI 109

Query: 112 RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
            +IT   I+  ++   +   +A + +    ++FK+AVR   +  NP  ++ +PKR+ +  
Sbjct: 110 SEITPIKIQKLMDKWANKYDTAPKMMNYTGLVFKYAVRFGIIESNPTDAIRKPKRRKKAT 169

Query: 172 RPWTKEDMQQFKSFWSE-GSQPRLA----FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226
                 D +Q K F  E  +QP L     F  L  +G+R  +   AG    ++  F  KT
Sbjct: 170 VEEPFYDKKQLKLFLDELYNQPNLKIQAFFRLLAMTGMRKQE---AGALEWRDIDFKAKT 226


>gi|302335678|ref|YP_003800885.1| integrase family protein [Olsenella uli DSM 7084]
 gi|301319518|gb|ADK68005.1| integrase family protein [Olsenella uli DSM 7084]
          Length = 308

 Score = 44.7 bits (104), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 44/220 (20%), Positives = 84/220 (38%), Gaps = 20/220 (9%)

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQP 192
           L+++R L++W VR+ Y   +   ++  PK      +  T  D+ Q      E    G + 
Sbjct: 84  LSAIRTLYRWLVREGYTNKDAAAAIASPKVARTLPKTMTDPDVCQLLGACDEDGVIGLRD 143

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT--------IITVELPDGFM-- 242
           R   E L  SG R S+  R  V  +      +     G          + ++  D ++  
Sbjct: 144 RALIELLYASGARISEISRLDVGDIDRERRQVTLLGKGGKERIVPLYDMCIDELDAYLLT 203

Query: 243 ---KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS 297
               L+       E  F++   ++M+A      F+ +   AG++   + H +R   AT  
Sbjct: 204 ARPALVVRGEGASEALFVSTRGRRMSAAALREAFERRVRLAGLDADITPHAMRHTYATEL 263

Query: 298 ADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNS 336
              GA    +    G  ++   + YT    DR++   + +
Sbjct: 264 LSGGADLRSVQELLGHSSLSTTQIYTHLSVDRLKAAARQA 303


>gi|145300550|ref|YP_001143391.1| tyrosine recombinase XerC [Aeromonas salmonicida subsp. salmonicida
           A449]
 gi|142853322|gb|ABO91643.1| tyrosine recombinase XerC [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 322

 Score = 44.7 bits (104), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 50/222 (22%), Positives = 93/222 (41%), Gaps = 23/222 (10%)

Query: 87  LAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVESRKH----TPSSAIQFLTS 139
           L+ ++R ++ES+   +   + + G  D+ ++    +RS V +R H     P S    +++
Sbjct: 37  LSPHTRSNYESHLQAMAAELVRLGVSDWARLEASQVRSLV-TRMHKAGLAPRSLSTKISA 95

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLA 195
           +R    W VRQ  +  NP   +  PK+     +    ++M Q  +   E      + R  
Sbjct: 96  LRSFCDWQVRQGRLTANPARGIVTPKQGRPLPKNLDVDEMYQLLNITDEQDPLAVRDRAI 155

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM------KLLAMTP 249
            E +  SGLR ++     +  ++ +   +K    G+   V LP G M      K L + P
Sbjct: 156 MELMYSSGLRLAELVGLNLGDIKLDDRQLKVTGKGSRERV-LPMGRMAVEWLHKWLKVRP 214

Query: 250 I--GKE--TFFINNDKQKMNATQFSIWFKAKATKAGVNKSAH 287
           +  G E    F++  KQ+++A            K  +N   H
Sbjct: 215 LLAGDEADALFVSKRKQRLSARSVQERLDGWGNKQALNAHVH 256


>gi|189345769|ref|YP_001942298.1| integrase [Chlorobium limicola DSM 245]
 gi|189339916|gb|ACD89319.1| integrase domain protein SAM domain protein [Chlorobium limicola
           DSM 245]
          Length = 223

 Score = 44.7 bits (104), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 52/118 (44%), Gaps = 9/118 (7%)

Query: 110 DYRKITTKHI---RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP-K 165
           + R +T  H+   R+ +E R    ++  + L S+  LF +   Q  V  NP L V+RP  
Sbjct: 61  EMRIVTRAHLLAWRTDLEQRNLAAATIRRKLASISSLFDYLCEQNAVLHNPVLGVKRPAA 120

Query: 166 RKTEGIRPWTKEDMQQF-----KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218
              EG  P   +   +       +   +G + R     LLY GLR  + CR  V+ LQ
Sbjct: 121 NNNEGTTPALGDSQARMLLDAPPANTLKGKRDRAILATLLYHGLRREELCRLQVKDLQ 178


>gi|256845727|ref|ZP_05551185.1| DNA integration/recombination/invertion protein [Fusobacterium sp.
           3_1_36A2]
 gi|256719286|gb|EEU32841.1| DNA integration/recombination/invertion protein [Fusobacterium sp.
           3_1_36A2]
          Length = 405

 Score = 44.7 bits (104), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 31/123 (25%), Positives = 61/123 (49%), Gaps = 10/123 (8%)

Query: 91  SRISFESYF---DQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWA 147
           +R S   YF   ++ +++  DFD      K+    +  R  +P++ + +   + ++FK+A
Sbjct: 114 ARCSLIPYFYRENKKLKEIEDFD----IEKYYYHELNYRNISPNTVLHYHYLLSLVFKYA 169

Query: 148 VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL--YSGLR 205
           +R + ++INP  SVE+PK+K      +  E++           +  + F  L+  Y GLR
Sbjct: 170 LRHKIISINPLDSVEKPKKKKYVAEVYNAEEINILLDLLKR-EEESIYFGVLMAAYFGLR 228

Query: 206 CSD 208
            S+
Sbjct: 229 RSE 231


>gi|261405985|ref|YP_003242226.1| integrase family protein [Paenibacillus sp. Y412MC10]
 gi|261282448|gb|ACX64419.1| integrase family protein [Paenibacillus sp. Y412MC10]
          Length = 294

 Score = 44.7 bits (104), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 37/191 (19%), Positives = 83/191 (43%), Gaps = 17/191 (8%)

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KSFW 186
           SS ++   S+R  F++ VRQ  +  +P   ++ PK + +  +  T E + +      S  
Sbjct: 68  SSLLRCTASLRSFFQYLVRQAVIVQDPTQLLDNPKPERKPPKSLTVEQVDKLLSAPDSGT 127

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
            +G++ +   E L  SG++ S+     +  +   +  ++   +G         G  ++L 
Sbjct: 128 PQGARDKAMLELLYASGIKVSELVNLSIHDIHLEMRFLRCAVSG---------GKERILP 178

Query: 247 MTPIGKET--FFINN--DKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGA 302
           +TPI  E+  F++ +  DK   +A + +++  +  T+         ++K+      D   
Sbjct: 179 ITPIAAESVAFYVRDMRDKLMRDAGEDALFLNSLGTRLTRQGFWKIIKKYGKLAGIDEDI 238

Query: 303 TAHELMATYGW 313
           T H L  ++  
Sbjct: 239 TPHTLRHSFAM 249


>gi|254708144|ref|ZP_05169972.1| phage integrase [Brucella pinnipedialis M163/99/10]
 gi|261315648|ref|ZP_05954845.1| integrase/recombinase [Brucella pinnipedialis M163/99/10]
 gi|261304674|gb|EEY08171.1| integrase/recombinase [Brucella pinnipedialis M163/99/10]
          Length = 164

 Score = 44.3 bits (103), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 60/139 (43%), Gaps = 6/139 (4%)

Query: 205 RCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ-- 262
           RCS +     +    + F ++  KTG  + + +     ++L  TP   ET  +    +  
Sbjct: 21  RCSKTVLLDGEAKSVDGFELRQGKTGKRLFLPITPILSEVLEATPRQGETVLVTAYGEPF 80

Query: 263 --KMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
             K    + + W  +     G   + HG+RK    I A+ GA+  ++M T G   +  AE
Sbjct: 81  SPKSLTGRMADWTASAKLPKGF--TLHGLRKTLGKILAEGGASTRQIMDTLGHDDIAHAE 138

Query: 321 TYTKGADRIRLGIKNSRRI 339
            YT+ A++ RL      R+
Sbjct: 139 LYTREAEQARLATDGMSRV 157


>gi|171913488|ref|ZP_02928958.1| integrase family protein [Verrucomicrobium spinosum DSM 4136]
          Length = 358

 Score = 44.3 bits (103), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 47/226 (20%), Positives = 97/226 (42%), Gaps = 18/226 (7%)

Query: 112 RKITTKHIRSGVES-RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170
           R+IT + + + V++ +K  P +AI +L+  +  F W  +   +  NP   V+ PK+ T+G
Sbjct: 100 RQITPRQVSAWVDALKKQNPETAINYLSVAQSWFSWLQQGFKINSNPASQVKPPKKPTKG 159

Query: 171 ----IRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226
               +RP   E+ ++  +  +       A    L++GLR  +   A       +   +  
Sbjct: 160 RKQFLRP---EEARKLITAATGDRDLTFALYCALHAGLRRKEVIEARPSWFDLDAGLLHV 216

Query: 227 QKTGTII-------TVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT---QFSIWFKAK 276
           Q T T +       T+ L   F + L      +E F ++ ++    +     F   ++  
Sbjct: 217 QATPTFVPKDKDNRTIPLTKEFREWLRKNYTMQEPFMLSPERTHGKSPYRYNFGRIYERL 276

Query: 277 ATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
             +AG++ + H +R+  A++    G + +++    G   V    TY
Sbjct: 277 LERAGLSANFHDLRRTFASLHVSKGTSVYKVAQWLGDGVVVVQRTY 322


>gi|71274794|ref|ZP_00651082.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella
           fastidiosa Dixon]
 gi|71897599|ref|ZP_00679844.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella
           fastidiosa Ann-1]
 gi|71902531|ref|ZP_00684453.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella
           fastidiosa Ann-1]
 gi|71164526|gb|EAO14240.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella
           fastidiosa Dixon]
 gi|71727745|gb|EAO30016.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella
           fastidiosa Ann-1]
 gi|71732502|gb|EAO34555.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella
           fastidiosa Ann-1]
          Length = 324

 Score = 44.3 bits (103), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 55/223 (24%), Positives = 88/223 (39%), Gaps = 25/223 (11%)

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           + ++P S  + L+ +R  F +AV   +   NP   +  P       +  T+  ++   + 
Sbjct: 84  QHYSPLSNARLLSVLRTFFSYAVECGWRNDNPSTLLAHPVLPHPLPKALTESQIEALLAA 143

Query: 186 WS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDG 240
            S    EG + R   E +  +GLR S+     V  L      ++ T K G    V L + 
Sbjct: 144 PSIETPEGLRNRAMLELMYAAGLRVSELVTLPVAMLNRRQGVLRITGKGGKERLVPLGEE 203

Query: 241 FMK------------LLAMTPI-----GKETFFINNDKQKMNATQFSIWFKAKATKAGV- 282
                          L A  PI     G    FIN + ++++  QF  W K  A  AG+ 
Sbjct: 204 SQHWLQRYLEQARPSLAADKPIPADSDGDVPLFINTNLKRLSRQQFWRWIKHYAALAGIA 263

Query: 283 -NK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
            NK S H +R   AT   + GA    L    G +++   + YT
Sbjct: 264 PNKVSPHVLRHSFATHLLNHGADLRALQMLLGHRSISTTQIYT 306


>gi|313123528|ref|YP_004033787.1| tyrosine recombinase xerd subunit [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
 gi|312280091|gb|ADQ60810.1| Tyrosine recombinase XerD subunit [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
          Length = 301

 Score = 44.3 bits (103), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 47/214 (21%), Positives = 92/214 (42%), Gaps = 24/214 (11%)

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFW 186
           SS  + ++++   ++W VRQ+ +A++P   ++ PKR+       T+ +    ++Q     
Sbjct: 73  SSISRLVSTLSRFYQWLVRQQLIALDPMSQIDAPKREKRMPLALTEAEVGKLLEQPDLTT 132

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---IITVE------- 236
             G + R   E L  +G+R S++    +  +  ++  IK    G+   +I V        
Sbjct: 133 DLGIRDRALVELLYATGMRVSEAVNLKLADVHADLQLIKVLGKGSKERLIPVSALALDWI 192

Query: 237 ---LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSA--HGV 289
              LP    +LL     GK + ++  + +    T+ ++W K K    +AG+ K    H +
Sbjct: 193 KRYLPVRDQQLLKR---GKSSDYLFLNSRGGQLTRQAVWQKIKKYCQQAGIAKDVTPHTL 249

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           R   AT   + GA    +    G   +   + YT
Sbjct: 250 RHSFATHLLEHGADLRVVQEILGHTDISTTQIYT 283


>gi|294674930|ref|YP_003575546.1| tyrosine recombinase XerD [Prevotella ruminicola 23]
 gi|294472077|gb|ADE81466.1| tyrosine recombinase XerD [Prevotella ruminicola 23]
          Length = 303

 Score = 44.3 bits (103), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 48/213 (22%), Positives = 85/213 (39%), Gaps = 21/213 (9%)

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK-----S 184
           P S  + L+ +R  FK+     Y   +P   +E P+         T +++ + +     S
Sbjct: 69  PRSQCRILSGIRSFFKFVQLDGYRDDDPTELLESPQIGDHLPEVLTTQEVDRLEESIDLS 128

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---IITVELPDGF 241
            W EG + R   E L   GLR S+     +  L  +   ++    G+   ++ +  P   
Sbjct: 129 KW-EGHRNRAIIEVLFSCGLRVSELVNLKLSDLYLDEEYVRVLGKGSKERLVPIS-PKAI 186

Query: 242 MKL---------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290
            +L         + + P  ++  F+N     +  T   I  KA+A +A + K  S H +R
Sbjct: 187 QELRFWFNVRNLMKIKPGEEDYVFLNRRGAHLTRTMILIMIKAQAKEARIQKTISPHTLR 246

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYT 323
              AT   + GA    + A  G + +   E YT
Sbjct: 247 HSFATALLEGGADLRFIQALLGHEDIGTTEIYT 279


>gi|300812172|ref|ZP_07092616.1| tyrosine recombinase XerD [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|300496857|gb|EFK31935.1| tyrosine recombinase XerD [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
          Length = 301

 Score = 44.3 bits (103), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 47/214 (21%), Positives = 92/214 (42%), Gaps = 24/214 (11%)

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFW 186
           SS  + ++++   ++W VRQ+ +A++P   ++ PKR+       T+ +    ++Q     
Sbjct: 73  SSISRLVSTLSRFYQWLVRQQLIALDPMSQIDAPKREKRMPLALTEAEVGKLLEQPDLTT 132

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---IITVE------- 236
             G + R   E L  +G+R S++    +  +  ++  IK    G+   +I V        
Sbjct: 133 DLGIRDRALVELLYATGMRVSEAVNLQLADVHADLQLIKVLGKGSKERLIPVSALALDWI 192

Query: 237 ---LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSA--HGV 289
              LP    +LL     GK + ++  + +    T+ ++W K K    +AG+ K    H +
Sbjct: 193 KRYLPVRDQQLLKR---GKSSDYLFLNSRGGQLTRQAVWQKIKKYCQQAGIAKDVTPHTL 249

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           R   AT   + GA    +    G   +   + YT
Sbjct: 250 RHSFATHLLEHGADLRVVQEILGHTDISTTQIYT 283


>gi|288800351|ref|ZP_06405809.1| integrase/recombinase XerD [Prevotella sp. oral taxon 299 str.
           F0039]
 gi|288332564|gb|EFC71044.1| integrase/recombinase XerD [Prevotella sp. oral taxon 299 str.
           F0039]
          Length = 311

 Score = 44.3 bits (103), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 53/219 (24%), Positives = 87/219 (39%), Gaps = 19/219 (8%)

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           +  RK   SS  + L+ +R  +++ V    +  NP   +E P          + E++ Q 
Sbjct: 66  LHERKIGASSQARILSGVRSFYRYLVIDGILEDNPTELLESPILGEHLPEVLSTEEVDQL 125

Query: 183 K-----SFWSEGSQPRLAFEFLLYSGLRCSDSCR---AGVQHLQNNIFSIKTQKTGTIIT 234
           +     S W EG + R   E L   GLR S+      + +  ++  I  I       +I 
Sbjct: 126 QNSIDLSKW-EGHRNRAIIEILFSCGLRVSELINLKLSNIYIIERYIRVIGKGSKERLIP 184

Query: 235 V------ELPDGFM--KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284
           +      EL   F    ++ + P  ++  F+N     +  T   I  K +A  AG+ K  
Sbjct: 185 ISDKALYELELWFRDRNIMNIKPGEQDYVFLNRRGAHLTRTMILIMIKKQAELAGIKKTI 244

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           S H +R   AT     GA    + A  G ++V   E YT
Sbjct: 245 SPHTLRHSFATELLRGGADLIAIQAMLGHESVSTTEIYT 283


>gi|254689202|ref|ZP_05152456.1| Phage integrase [Brucella abortus bv. 6 str. 870]
 gi|256257452|ref|ZP_05462988.1| Phage integrase [Brucella abortus bv. 9 str. C68]
 gi|260754704|ref|ZP_05867052.1| conserved hypothetical protein [Brucella abortus bv. 6 str. 870]
 gi|260883729|ref|ZP_05895343.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68]
 gi|297248299|ref|ZP_06932017.1| hypothetical protein BAYG_01242 [Brucella abortus bv. 5 str. B3196]
 gi|260674812|gb|EEX61633.1| conserved hypothetical protein [Brucella abortus bv. 6 str. 870]
 gi|260873257|gb|EEX80326.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68]
 gi|297175468|gb|EFH34815.1| hypothetical protein BAYG_01242 [Brucella abortus bv. 5 str. B3196]
          Length = 341

 Score = 44.3 bits (103), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 57/266 (21%), Positives = 102/266 (38%), Gaps = 15/266 (5%)

Query: 62  NSPRKKPTTLKW--LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-----FDYRKI 114
           N  R  P   K+  +I+ Y+ S  +  LA +++ ++  + D+I +K GD     FD  + 
Sbjct: 46  NDSRVIPDASKFRAVITAYKSSHDYQKLADSTKRNWNGWLDRIGKKFGDLSIAQFDLPQK 105

Query: 115 TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRP 173
               IR         P +A   +  +  +  +AV     ++ NPC  +++  +       
Sbjct: 106 IRPVIRKWRGEFADKPRTADYGMQVLSRVLSYAVDPLGKISQNPCEGIKQLYKNDRAAII 165

Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233
           WT +D+ + K+  S   +   A +   ++GLR  D  R    H+ +N   + T K+    
Sbjct: 166 WTDQDIARLKTKCS--PEVAWAVDLAAHTGLRAGDLLRLSWSHITDNAIILPTGKSRHTK 223

Query: 234 TVELP--DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF---KAKATKAGVNKSAHG 288
              +P       LL   P        N  K       F   F   + +A     +   H 
Sbjct: 224 EAVIPLYAELRALLQTIPRRSPIVLTNTRKAPWTVNGFGSSFSDCRGEAKLGDRDLHFHD 283

Query: 289 VRKFSATISADAGATAHELMATYGWK 314
            R  +AT    AG +   +    GW+
Sbjct: 284 FRGTAATKFYIAGLSERVIAEIMGWE 309


>gi|170729959|ref|YP_001775392.1| site-specific tyrosine recombinase XerD [Xylella fastidiosa M12]
 gi|167964752|gb|ACA11762.1| integrase/recombinase [Xylella fastidiosa M12]
          Length = 324

 Score = 44.3 bits (103), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 55/223 (24%), Positives = 88/223 (39%), Gaps = 25/223 (11%)

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           + ++P S  + L+ +R  F +AV   +   NP   +  P       +  T+  ++   + 
Sbjct: 84  QHYSPLSNARLLSVLRTFFSYAVECGWRNDNPSTLLAHPVLPHPLPKALTESQIEALLAA 143

Query: 186 WS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDG 240
            S    EG + R   E +  +GLR S+     V  L      ++ T K G    V L + 
Sbjct: 144 PSIETPEGLRNRAMLELMYAAGLRVSELITLPVAMLNRRQGVLRITGKGGKERLVPLGEE 203

Query: 241 FMK------------LLAMTPI-----GKETFFINNDKQKMNATQFSIWFKAKATKAGV- 282
                          L A  PI     G    FIN + ++++  QF  W K  A  AG+ 
Sbjct: 204 SQHWLQRYLEQARPSLAADKPIPADSDGDVPLFINTNLKRLSRQQFWRWIKHYAALAGIA 263

Query: 283 -NK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
            NK S H +R   AT   + GA    L    G +++   + YT
Sbjct: 264 PNKVSPHVLRHSFATHLLNHGADLRALQMLLGHRSISTTQIYT 306


>gi|34451618|gb|AAQ72365.1| putative integrase [Thermus sp. R]
          Length = 391

 Score = 44.3 bits (103), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 51/234 (21%), Positives = 96/234 (41%), Gaps = 28/234 (11%)

Query: 111 YRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI--NPCLSVERPKRKT 168
           + ++ ++HIR+ + SR+ +P  A + L S+R LF++    E + +  +P   V+RPK   
Sbjct: 127 WEEVGSQHIRAFLASREVSPYRAGRVLASLRKLFRYLAEVEGLPLLKDPTEGVKRPKLPR 186

Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPRLAFE------FLLYSGLRCSDSCRAGVQHL--QNN 220
                 T  ++ +      +   PR+A        FL  +GLR S++       L  Q+ 
Sbjct: 187 RLPVYLTPPEVARLLQAAYQNRSPRVALRDWALLAFLYGTGLRLSEALALTYADLTYQDG 246

Query: 221 I-FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF--FINNDKQKMNATQFSIWFKAKA 277
           I  +I+ Q  G         G  +++ ++P  +     ++ +   + + T   IW     
Sbjct: 247 IPHAIRVQGKG---------GKERVVVLSPTAQRALHQWLKHRNLEGHPTSPYIWSHTSG 297

Query: 278 TKAGVNKSAHGVRKFSATISADAGA------TAHELMATYGWKTVDQAETYTKG 325
              G   SA  V      ++  AG       T H+L  +Y    V+      +G
Sbjct: 298 PNRGKPFSARAVEAMVKRVAKRAGLKDWRRITPHKLRHSYASALVEAGRGIDEG 351


>gi|325925497|ref|ZP_08186888.1| tyrosine recombinase XerD subunit [Xanthomonas perforans 91-118]
 gi|325544089|gb|EGD15481.1| tyrosine recombinase XerD subunit [Xanthomonas perforans 91-118]
          Length = 323

 Score = 44.3 bits (103), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 56/274 (20%), Positives = 108/274 (39%), Gaps = 48/274 (17%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
           ++ +R  AH G L ++              ++  FDY +  T+          ++P S  
Sbjct: 55  LARWRDGAHGGLLGID--------------RAALFDYLRWRTQA--------NYSPRSTA 92

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGS 190
           + L+++R  +   +R    + +P   ++ P+      +  T+  ++   +        G 
Sbjct: 93  RLLSTLRAFYGLCLRDGVRSDDPTTLIDPPQLPRSLPKALTESQIEALLAAPDVDTPAGL 152

Query: 191 QPRLAFEFLLYSGLRCSDSCR---AGVQHLQNNIFSI--KTQKTGTIITVELPDGFMK-- 243
           + R   E +  +GLR S+       GV +L+  +  +  K  K   +   E    +++  
Sbjct: 153 RDRAMLELMYAAGLRVSELVNLPAVGV-NLRQGVLRVTGKGSKDRLVPLGEESQHWLERY 211

Query: 244 -------LLAMTPI----GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGV 289
                  L A TP+    G+   FI+  +Q ++  QF    K  A  AG++    S HG+
Sbjct: 212 LREARPLLAANTPVAAVDGQVPLFIDAARQPLSRQQFWALVKRYAAVAGIDPDTVSPHGL 271

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           R   AT   + GA    L    G  ++   + YT
Sbjct: 272 RHSFATHLLNHGADLRALQMLLGHSSLSTTQIYT 305


>gi|116618399|ref|YP_818770.1| tyrosine recombinase XerD subunit [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|116097246|gb|ABJ62397.1| tyrosine recombinase XerD subunit [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
          Length = 297

 Score = 44.3 bits (103), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 57/237 (24%), Positives = 94/237 (39%), Gaps = 30/237 (12%)

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-- 188
           SS I+ +T++R  F + VR++ VA NP   V  PK+        + E++ +      E  
Sbjct: 70  SSVIRMVTTLRNFFGYLVREKVVAHNPMNDVRPPKKAEHLPAVLSIEEIDRLLQAPIEDT 129

Query: 189 --GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
             G + R   E +  +GLR S+     +  L   +  I+T   G    + +P G + +  
Sbjct: 130 PLGLRNRTLLEVMYATGLRVSELVNLKMSDLHLQLGLIQTLGKGDKERI-IPIGEIAIDW 188

Query: 247 MTPIGKET-----------FFINNDKQKMNATQFSIW--FKAKATKAGVNK--SAHGVRK 291
           +T    E+           +   ND+    + Q  IW   K   T AG+ K  S H +R 
Sbjct: 189 LTRYFNESRIVLLKDKESPYVFLNDRGNQISRQ-GIWKIIKKLVTTAGITKDVSPHTLRH 247

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
             AT   + GA    +    G   +   + YT  +          +R+S V D   P
Sbjct: 248 SFATHILENGADLRIVQELLGHADISTTQIYTHIS---------KKRLSEVYDEYHP 295


>gi|222148689|ref|YP_002549646.1| phage-related integrase [Agrobacterium vitis S4]
 gi|221735675|gb|ACM36638.1| phage-related integrase [Agrobacterium vitis S4]
          Length = 346

 Score = 44.3 bits (103), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 67/310 (21%), Positives = 120/310 (38%), Gaps = 30/310 (9%)

Query: 23  YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSA 82
           YY+    G R++  Y       PA+      +T  R   ++      TL ++IS Y++  
Sbjct: 23  YYYAWKGGPRLKEKYG-----TPAFAEEFRQATRDRSAPDAD-----TLAYVISLYKR-M 71

Query: 83  HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHTPSSAIQFLT 138
               L  ++R ++  Y   I  + GD D R +     R+      ++   TP +A    +
Sbjct: 72  ELPRLKPSTRSTYLPYLKNIEIEFGDMDIRAVEATGSRAVFLEWRDTMATTPRAADIAWS 131

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP---WTKEDMQQFKSFWSEGSQPRLA 195
            ++ +  + V  E +  NPC +  R      G R    WT  D+ +F++  S   Q   A
Sbjct: 132 ILQRIMAFGVHMEKLKRNPCTNAGRLAE--SGTRREIIWTPPDLSRFRAVASR--QLADA 187

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE-- 253
               +++G R  D  +            +K  KTG  + + +     K+L       E  
Sbjct: 188 LLLAIWTGQRQGDLLKLQWSAYDGKHIRLKQGKTGRRVAILVSGTLGKMLDRLKAENEAR 247

Query: 254 -----TFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHEL 307
                T   N   +   ++ F   +   A KAG+   + H +R    T++  AGA+  ++
Sbjct: 248 KVQSLTILTNQRGRTWTSSGFKTSWGKAAKKAGITGLTFHDLRGTFITMARRAGASIEDI 307

Query: 308 MATYGWKTVD 317
               G  T D
Sbjct: 308 AKASGHTTKD 317


>gi|57234341|ref|YP_181631.1| phage integrase family site specific recombinase [Dehalococcoides
           ethenogenes 195]
 gi|57234884|ref|YP_181043.1| phage integrase family site specific recombinase [Dehalococcoides
           ethenogenes 195]
 gi|57234923|ref|YP_181020.1| phage integrase family site specific recombinase [Dehalococcoides
           ethenogenes 195]
 gi|57224789|gb|AAW39846.1| site-specific recombinase, phage integrase family [Dehalococcoides
           ethenogenes 195]
 gi|57225332|gb|AAW40389.1| site-specific recombinase, phage integrase family [Dehalococcoides
           ethenogenes 195]
 gi|57225371|gb|AAW40428.1| site-specific recombinase, phage integrase family [Dehalococcoides
           ethenogenes 195]
          Length = 319

 Score = 44.3 bits (103), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 46/231 (19%), Positives = 92/231 (39%), Gaps = 16/231 (6%)

Query: 107 GDFDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP 164
           G  D +++T  HIR  + +++ T  P S   +  S++V F W  R+  ++ +P   +  P
Sbjct: 66  GLTDPKEVTASHIRGFLLTKQETCQPVSVHGYYRSIKVFFNWLTREGVISFSPMAPIRPP 125

Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQN 219
           K   + IRP+  ++++       EG      + R     L+ +G+R  +     +  +  
Sbjct: 126 KVPKKIIRPYYPDELRSL-LLACEGRGILSLRDRAIMLVLIDNGIRLGELANINISDIDV 184

Query: 220 NIFSI----KTQKTGTI-ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274
           +  +I    K +K   + I+        K L        + ++  D + +      +   
Sbjct: 185 DRETISVWGKGRKQRVVGISKRTQMAVYKYLHARVDNNPSLWVTTDSKTLTPKGIYLAIH 244

Query: 275 AKATKAG---VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
               +AG   V  S H  R  +AT+S   G    ++ +  G  T+     Y
Sbjct: 245 RLGERAGLKDVRNSPHTFRHTAATLSIKNGGDLFQVQSMLGHTTLAMTRRY 295


>gi|161507450|ref|YP_001577404.1| integrase/recombinase [Lactobacillus helveticus DPC 4571]
 gi|260101638|ref|ZP_05751875.1| integrase/recombinase XerD [Lactobacillus helveticus DSM 20075]
 gi|160348439|gb|ABX27113.1| Integrase/recombinase [Lactobacillus helveticus DPC 4571]
 gi|260084571|gb|EEW68691.1| integrase/recombinase XerD [Lactobacillus helveticus DSM 20075]
 gi|323466665|gb|ADX70352.1| Tyrosine recombinase xerD [Lactobacillus helveticus H10]
 gi|328467464|gb|EGF38539.1| tyrosine recombinase xerD [Lactobacillus helveticus MTCC 5463]
          Length = 301

 Score = 44.3 bits (103), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 48/217 (22%), Positives = 89/217 (41%), Gaps = 29/217 (13%)

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-- 188
           SS  + ++SMR  ++W  RQ    +NP L ++ PK++    R     + ++     ++  
Sbjct: 72  SSISRLISSMRKFYQWLARQNIQKLNPMLEIDLPKKER---RLPVALNQKEINDLLAQPD 128

Query: 189 -----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT------IITVEL 237
                G + R   E L  +G+R S+     +Q L  ++  ++    G+      I +V L
Sbjct: 129 IKRKLGLRDRAILETLYATGMRVSELINLELQDLHEDLGLVRVLGKGSKERLIPISSVAL 188

Query: 238 P--DGFMK-----LLAMTPIGKETFFINNDKQKMNATQFSIW--FKAKATKAGVNKSA-- 286
                + K     L+       E  F+N+  +++  T+ +IW   K     AG+ K    
Sbjct: 189 HWIKQYQKEVRDPLILKAGQNDEHIFLNSRAKQL--TRQAIWQMIKKYCQSAGITKDVTP 246

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           H +R   AT   + GA    +    G   +   + YT
Sbjct: 247 HTLRHTFATHLLENGADLRVVQEILGHSDISTTQIYT 283


>gi|284008874|emb|CBA75687.1| phage integrase [Arsenophonus nasoniae]
          Length = 326

 Score = 44.3 bits (103), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 1/99 (1%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
           KK  + K L S Y  S H+  L++ S+         I++  G+     I  +HIR  ++ 
Sbjct: 46  KKLLSFKELWSMYLNSPHFSELSIRSQKDKHQGGKNILKVFGNIHVNNIKPEHIRKYMDI 105

Query: 126 R-KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163
           R   + + A   L+ M V F W   + Y   NPCL +++
Sbjct: 106 RGTQSKTQANHELSYMSVTFSWGYERGYCKNNPCLGIKK 144


>gi|42526683|ref|NP_971781.1| phage integrase family site specific recombinase [Treponema
           denticola ATCC 35405]
 gi|41816876|gb|AAS11662.1| site-specific recombinase, phage integrase family [Treponema
           denticola ATCC 35405]
          Length = 354

 Score = 44.3 bits (103), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 92/217 (42%), Gaps = 24/217 (11%)

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER---PKRKTEGIRPWTKEDMQQFKS- 184
           +P +   +  S+R LFK AVR   +  +P + V+    P+   E + P   ED+++  + 
Sbjct: 128 SPYTCENYACSLRTLFKKAVRDGVLVKDPTIGVKHIHCPESIKEFLMP---EDIRKLAAE 184

Query: 185 --FWSEGSQPRLAFEFLLYSGLRCSD--SCRAGVQHLQNNIFSIKTQKTGTIITVELPD- 239
                 G+  + AF F   +GLR SD  S + G    +    +   QKT   + + + D 
Sbjct: 185 PIGGILGADVKKAFLFACCTGLRISDLKSLKWGGVSFEKKTLTKIQQKTKRAVYLPIKDE 244

Query: 240 --GFMKLLAM---TPIGKETFFINNDKQKMNATQFSI-WFKAKATKAGVNKSA--HGVRK 291
              F+ LLA        ++  F +      N  Q+ I W K    +AGV +    H  R 
Sbjct: 245 AIAFLHLLAEENPNRTDEDFIFPHVATTGTNMNQYLIEWGK----RAGVRQKIGWHLARH 300

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
             AT+  ++GA  + +    G   +     YT+  DR
Sbjct: 301 THATLLLESGADLYTVQKLLGHTKISTTAQYTQVTDR 337


>gi|183221814|ref|YP_001839810.1| tyrosine recombinase XerC [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
 gi|189911886|ref|YP_001963441.1| tyrosine site-specific recombinase XerC [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167776562|gb|ABZ94863.1| Tyrosine site-specific recombinase XerC [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167780236|gb|ABZ98534.1| Tyrosine recombinase XerC [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
          Length = 311

 Score = 44.3 bits (103), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 50/227 (22%), Positives = 90/227 (39%), Gaps = 15/227 (6%)

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT---EGIRPWTKEDMQQ 181
           S+K    +  + L+S+R  +K+  R+E +  NP L V  PK K    +   P   ED+  
Sbjct: 79  SKKQDKRTQSRKLSSLRTFYKFLFREEKIGANPILQVSFPKTKKRLPKNFTPIETEDILD 138

Query: 182 FKSFWSE---GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-----QKTGTII 233
           ++    +   G + +   E L  +GLR  +   A +  L   + S+K      ++    I
Sbjct: 139 YEDPEKKEVLGKRDKAIVEVLYSTGLRVFELVNAKLSDLNEELTSLKVMGKRRKERFVFI 198

Query: 234 TVELPDGFMKLL-AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVR 290
             E      + L      G E  F+N    K+           + +  G+ K+   H  R
Sbjct: 199 GPEAKVALQEYLDERGNGGPEEIFLNQRGGKLTTRGIRYILSERRSVMGMEKAITPHKFR 258

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNS 336
              AT   +AGA    +    G  ++   + Y   + DR++   +N+
Sbjct: 259 HTFATDLLNAGADIRAVQELLGHSSLSSTQVYLSVSRDRLKEVYRNA 305


>gi|104783227|ref|YP_609725.1| site-specific tyrosine recombinase XerD [Pseudomonas entomophila
           L48]
 gi|95112214|emb|CAK16941.1| site-specific tyrosine recombinase, integrase family [Pseudomonas
           entomophila L48]
          Length = 298

 Score = 43.9 bits (102), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 49/221 (22%), Positives = 91/221 (41%), Gaps = 21/221 (9%)

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
            + + P S  +FL+ +R  +++ +R+  +A++P L V+ P+      +  ++ D++    
Sbjct: 65  DQAYKPRSTARFLSGVRGFYRYLLRERMIAVDPTLQVDMPQLGRPLPKSLSEADVEALLK 124

Query: 185 F----WSEGSQPRLAFEFLLYSGLRCSD---------SCRAGVQHLQNNIFSIKTQKTG- 230
                 + G + R   E L   GLR ++         + R GV  +       +    G 
Sbjct: 125 APDLGEAIGQRDRAMLEVLYACGLRVTELVSLTLDQVNLRQGVLRVMGKGSKERLVPMGE 184

Query: 231 -TIITVE--LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--S 285
             ++ +E  L DG  +LL   P   +  F +   ++M    F    K  A  AG++K  S
Sbjct: 185 EAVLWLERYLRDGRAELLNGRP--SDVLFPSLRGEQMTRQTFWHRIKHHARVAGIDKPLS 242

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            H +R   AT   + GA    +    G   +   + YT  A
Sbjct: 243 PHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA 283


>gi|45289499|gb|AAS57783.1| Sb28 [Salmonella enterica subsp. enterica serovar Typhimurium]
          Length = 168

 Score = 43.9 bits (102), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 53/100 (53%), Gaps = 1/100 (1%)

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
           RK   T   L  ++  SA +  LA  ++  + ++   I+   GD + + I  +HIR  ++
Sbjct: 55  RKNRITFTQLWRKFLASADYADLAPRTQKDYLAHEKYILAVFGDAEAKAIKPEHIRRYMD 114

Query: 125 SR-KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163
           +R + +   A    +SM  +F+W+ ++ YV  NPC+ V++
Sbjct: 115 ARGQKSRVQANHEHSSMSRVFRWSYQRGYVPGNPCVGVDK 154


>gi|33600646|ref|NP_888206.1| integrase [Bordetella bronchiseptica RB50]
 gi|33568246|emb|CAE32158.1| integrase [Bordetella bronchiseptica RB50]
          Length = 319

 Score = 43.9 bits (102), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 33/146 (22%), Positives = 62/146 (42%), Gaps = 7/146 (4%)

Query: 107 GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
            +F   ++  KH+ +       TP+ A + L+ ++ +F +AV  + V  NPC+ +   KR
Sbjct: 80  AEFAPDQVRPKHVAALKVDMADTPNMANRVLSFLKTVFVYAVEWQLVDSNPCIGI---KR 136

Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226
             EG R     D +    +     + ++  + L  +G R  D        L  +    + 
Sbjct: 137 HNEGKRKRYITDAEYAAIYHHANPRMQVIMDLLYLTGQRVGDVLAIKRSDLTEDGIVFEQ 196

Query: 227 QKTGTIITV----ELPDGFMKLLAMT 248
           +KTG  + V    EL D  ++  A+ 
Sbjct: 197 EKTGAKLLVRWVPELRDAVVRANALN 222


>gi|281424791|ref|ZP_06255704.1| tyrosine recombinase XerD [Prevotella oris F0302]
 gi|281401161|gb|EFB31992.1| tyrosine recombinase XerD [Prevotella oris F0302]
          Length = 307

 Score = 43.9 bits (102), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 51/229 (22%), Positives = 82/229 (35%), Gaps = 53/229 (23%)

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK--RKTEGIRPWTKEDM--QQFKSF 185
           P S  + L+ +R  +++ +   Y+  +P   +E P   +    +    + DM  Q     
Sbjct: 73  PRSQSRILSGIRSFYRFLLLDGYIETDPTELLESPALGQHLPEVLSTAEVDMLEQSIDLS 132

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
             EG +     E L   GLR S+     +  L                   L DGF+++L
Sbjct: 133 KLEGQRNLAIIEVLFSCGLRVSELVNLKLSQLY------------------LDDGFIRVL 174

Query: 246 A------MTPI----------------------GKETF-FINNDKQKMNATQFSIWFKAK 276
                  + PI                      G+E F F+N     +  T   I  K +
Sbjct: 175 GKGSKERLVPISPRAIKELQLWFTDRVHLNIKPGEEDFVFLNRRGHHLTRTMILIMIKRQ 234

Query: 277 ATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           A +AG+ K  S H +R   AT     GA    + A  G +++   E YT
Sbjct: 235 AEEAGIKKTISPHTLRHSFATALLQGGADLRAIQAMLGHESIGTTEIYT 283


>gi|225627919|ref|ZP_03785955.1| phage integrase family site specific recombinase [Brucella ceti
           str. Cudo]
 gi|254694153|ref|ZP_05155981.1| phage integrase [Brucella abortus bv. 3 str. Tulya]
 gi|254702191|ref|ZP_05164019.1| phage integrase [Brucella suis bv. 5 str. 513]
 gi|254710513|ref|ZP_05172324.1| phage integrase [Brucella pinnipedialis B2/94]
 gi|254714506|ref|ZP_05176317.1| phage integrase [Brucella ceti M644/93/1]
 gi|254717404|ref|ZP_05179215.1| phage integrase [Brucella ceti M13/05/1]
 gi|256032006|ref|ZP_05445620.1| phage integrase [Brucella pinnipedialis M292/94/1]
 gi|256045098|ref|ZP_05447999.1| phage integrase [Brucella melitensis bv. 1 str. Rev.1]
 gi|256061527|ref|ZP_05451671.1| phage integrase [Brucella neotomae 5K33]
 gi|256114028|ref|ZP_05454805.1| phage integrase [Brucella melitensis bv. 3 str. Ether]
 gi|256160204|ref|ZP_05457898.1| phage integrase [Brucella ceti M490/95/1]
 gi|256255410|ref|ZP_05460946.1| phage integrase [Brucella ceti B1/94]
 gi|256369890|ref|YP_003107401.1| site-specific recombinase, phage integrase family [Brucella microti
           CCM 4915]
 gi|260169143|ref|ZP_05755954.1| site-specific recombinase, phage integrase family protein [Brucella
           sp. F5/99]
 gi|260565302|ref|ZP_05835786.1| phage integrase [Brucella melitensis bv. 1 str. 16M]
 gi|261214456|ref|ZP_05928737.1| integrase/recombinase [Brucella abortus bv. 3 str. Tulya]
 gi|261219235|ref|ZP_05933516.1| integrase/recombinase [Brucella ceti M13/05/1]
 gi|261222614|ref|ZP_05936895.1| integrase/recombinase [Brucella ceti B1/94]
 gi|261318084|ref|ZP_05957281.1| integrase/recombinase [Brucella pinnipedialis B2/94]
 gi|261322296|ref|ZP_05961493.1| integrase/recombinase [Brucella ceti M644/93/1]
 gi|261325538|ref|ZP_05964735.1| integrase/recombinase [Brucella neotomae 5K33]
 gi|261752763|ref|ZP_05996472.1| integrase/recombinase [Brucella suis bv. 5 str. 513]
 gi|261758653|ref|ZP_06002362.1| phage integrase [Brucella sp. F5/99]
 gi|265989118|ref|ZP_06101675.1| integrase/recombinase [Brucella pinnipedialis M292/94/1]
 gi|265991531|ref|ZP_06104088.1| integrase/recombinase [Brucella melitensis bv. 1 str. Rev.1]
 gi|265995369|ref|ZP_06107926.1| integrase/recombinase [Brucella melitensis bv. 3 str. Ether]
 gi|265998579|ref|ZP_06111136.1| integrase/recombinase [Brucella ceti M490/95/1]
 gi|294852794|ref|ZP_06793467.1| phage integrase [Brucella sp. NVSL 07-0026]
 gi|225617082|gb|EEH14128.1| phage integrase family site specific recombinase [Brucella ceti
           str. Cudo]
 gi|256000053|gb|ACU48452.1| site-specific recombinase, phage integrase family [Brucella microti
           CCM 4915]
 gi|260151370|gb|EEW86464.1| phage integrase [Brucella melitensis bv. 1 str. 16M]
 gi|260916063|gb|EEX82924.1| integrase/recombinase [Brucella abortus bv. 3 str. Tulya]
 gi|260921198|gb|EEX87851.1| integrase/recombinase [Brucella ceti B1/94]
 gi|260924324|gb|EEX90892.1| integrase/recombinase [Brucella ceti M13/05/1]
 gi|261294986|gb|EEX98482.1| integrase/recombinase [Brucella ceti M644/93/1]
 gi|261297307|gb|EEY00804.1| integrase/recombinase [Brucella pinnipedialis B2/94]
 gi|261301518|gb|EEY05015.1| integrase/recombinase [Brucella neotomae 5K33]
 gi|261738637|gb|EEY26633.1| phage integrase [Brucella sp. F5/99]
 gi|261742516|gb|EEY30442.1| integrase/recombinase [Brucella suis bv. 5 str. 513]
 gi|262553203|gb|EEZ09037.1| integrase/recombinase [Brucella ceti M490/95/1]
 gi|262766482|gb|EEZ12271.1| integrase/recombinase [Brucella melitensis bv. 3 str. Ether]
 gi|263002315|gb|EEZ14890.1| integrase/recombinase [Brucella melitensis bv. 1 str. Rev.1]
 gi|264661315|gb|EEZ31576.1| integrase/recombinase [Brucella pinnipedialis M292/94/1]
 gi|294821383|gb|EFG38382.1| phage integrase [Brucella sp. NVSL 07-0026]
          Length = 164

 Score = 43.9 bits (102), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 60/139 (43%), Gaps = 6/139 (4%)

Query: 205 RCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ-- 262
           RCS +     +    + F ++  KTG  + + +     ++L  TP   ET  +    +  
Sbjct: 21  RCSKTVFLDGEAKSVDGFELRQGKTGKRLFLPITPILSEVLEATPRQGETVLVTAYGEPF 80

Query: 263 --KMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
             K    + + W  +     G   + HG+RK    I A+ GA+  ++M T G   +  AE
Sbjct: 81  SPKSLTGRMADWTASAKLPKGF--TLHGLRKTLGKILAEGGASTRQIMDTLGHDDIAHAE 138

Query: 321 TYTKGADRIRLGIKNSRRI 339
            YT+ A++ RL      R+
Sbjct: 139 LYTREAEQARLATDGMSRV 157


>gi|330827985|ref|YP_004390937.1| Tyrosine recombinase XerC [Aeromonas veronii B565]
 gi|328803121|gb|AEB48320.1| Tyrosine recombinase XerC [Aeromonas veronii B565]
          Length = 325

 Score = 43.9 bits (102), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 47/222 (21%), Positives = 93/222 (41%), Gaps = 23/222 (10%)

Query: 87  LAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVESRKH----TPSSAIQFLTS 139
           L+ ++R +++++ + +   +   G  D+ ++    +R+ V +R H     P S    +++
Sbjct: 40  LSPHTRNNYQAHLEAMTAELVALGLTDWGRLEASQVRTLV-TRMHKAGLAPRSLSTKVSA 98

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLA 195
           +R    W VRQ  +  NP   +  PK+     +    ++M Q  +   E      + R  
Sbjct: 99  LRSFCDWQVRQGRLTANPARGIVTPKQGRPLPKNLDVDEMHQLLNITDEQDPLAVRDRAI 158

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM------KLLAMTP 249
            E +  SGLR ++     +  L+ +   +K    G+   V LP G M      K L + P
Sbjct: 159 MELMYSSGLRLAELVGINLVDLKLDDRQLKVTGKGSRERV-LPIGRMAVEWLQKWLKVRP 217

Query: 250 I----GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAH 287
           +      E  F+++ KQ+++A            K  +N   H
Sbjct: 218 LLAGDESEALFVSSRKQRLSARSVQARLDGWGNKQALNAHVH 259


>gi|163783234|ref|ZP_02178228.1| Phage integrase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881568|gb|EDP75078.1| Phage integrase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 369

 Score = 43.9 bits (102), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 56/247 (22%), Positives = 109/247 (44%), Gaps = 32/247 (12%)

Query: 99  FDQIIR-----KSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQE 151
           ++ IIR     + GD    +ITT  ++  V  R  + +P++ +Q +  ++ +FK A    
Sbjct: 83  YEGIIRNHFMPRFGDKKLSRITTGMLQGYVAERLSQVSPTTVLQEVVLLKEMFKHAQSWG 142

Query: 152 YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP--RLAFEFLLYSGLRCSDS 209
           Y+  NP  +++RP+R+ + I   T E+++    F  E +    R+AF   + +GLR  + 
Sbjct: 143 YIKHNPAQNLQRPRREKKEIDILTPEEVE----FLLENTHEHYRVAFLTAVMTGLRAGEL 198

Query: 210 CRA---GVQHLQNNIFSIKTQKTG---------TIITVELPDGFMKLLAM----TPIGKE 253
                  +      I+  +T   G         +I  V++PD  ++ L +     P  K 
Sbjct: 199 WGLKWDDIDWHSKQIYVRRTLWNGEFHTPKSRHSIGKVDMPDVLVEELKLWEIRCPPNKY 258

Query: 254 TFFINNDKQKMNATQFSI--WFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMAT 310
                + K + +  Q  +  +FK    +AG+   S H +R  +A+I   AG     +   
Sbjct: 259 NLVFPSPKGEPSEHQNVVNRYFKPALRRAGLRVVSFHSLRHTNASIRIRAGQNIKYIQRQ 318

Query: 311 YGWKTVD 317
            G  +++
Sbjct: 319 LGHASIN 325


>gi|330974049|gb|EGH74115.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. aceris str. M302273PT]
          Length = 320

 Score = 43.9 bits (102), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 53/247 (21%), Positives = 93/247 (37%), Gaps = 32/247 (12%)

Query: 99  FDQIIRKSGDFDYRKITTKHI---RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI 155
           F   I  +   D+R +T  H+   R+ +E R    ++  + L ++  LF   +    +A 
Sbjct: 52  FSSFIGLASADDFRLVTRSHVLAWRADLEHRGLAGATIRRKLAALASLFDHLLENNAIAG 111

Query: 156 -NPCLSVERPK-RKTEGIRPWTKEDMQQFKSFWS-------EGSQPRLAFEFLLYSGLRC 206
            NP   V+RPK    EG  P   +   Q K+          +G + R     LLY GLR 
Sbjct: 112 GNPVHGVKRPKIESNEGKTPALGD--HQAKALLDAPDESTLKGLRDRAILAVLLYHGLRR 169

Query: 207 SDSCRAGVQHLQN--NIFSIKTQKTGTIITVELPDGFMKLLAMTPI--GKETFFINNDKQ 262
            ++ +  V  +Q    I  +K    G         G ++ L + P+  G+   ++     
Sbjct: 170 EEAAQLQVSDIQERRGIQHLKIHGKG---------GKVRYLPLHPVAAGRIHLYLERSGH 220

Query: 263 KMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGAT-----AHELMATYGWKTVD 317
            ++  +  ++   +    G   SA+G+       +  AG        H L AT     +D
Sbjct: 221 HLDDKKVPLFIPLRGKPTGAGVSANGIYTVVEAYAKKAGIEVAGLGVHGLRATAATNALD 280

Query: 318 QAETYTK 324
                 K
Sbjct: 281 HEADIAK 287


>gi|117619677|ref|YP_855009.1| tyrosine recombinase XerC [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
 gi|117561084|gb|ABK38032.1| tyrosine recombinase XerC [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
          Length = 325

 Score = 43.9 bits (102), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 47/222 (21%), Positives = 93/222 (41%), Gaps = 23/222 (10%)

Query: 87  LAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVESRKH----TPSSAIQFLTS 139
           L+ ++R +++++ + +   + K G  D+ ++    +RS V +R H     P S    +++
Sbjct: 40  LSPHTRSNYQAHLEAMTAELVKLGVDDWARLEASQVRSLV-TRMHKAGLAPRSLATKVSA 98

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLA 195
           +R    W VRQ  +  NP   +  PK+     +    ++M Q  +   E      + R  
Sbjct: 99  LRSFCDWQVRQGRLVANPARGIVTPKQGRPLPKNLDVDEMYQLLNITDEQDPLAVRDRAI 158

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM------KLLAMTP 249
            E +  SGLR ++     +  ++ +   ++    G+   V LP G M      K L + P
Sbjct: 159 MELMYSSGLRLAELVGLNLADVKLDERQLRVTGKGSRERV-LPVGRMAVEWLHKWLKLRP 217

Query: 250 IGK----ETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAH 287
           +      E  F++  KQ+++A            K  +N   H
Sbjct: 218 LLAGDELEALFVSKRKQRLSARSVQERLDGWGNKQALNAHVH 259


>gi|293604631|ref|ZP_06687033.1| phage integrase family site-specific recombinase [Achromobacter
           piechaudii ATCC 43553]
 gi|292816962|gb|EFF76041.1| phage integrase family site-specific recombinase [Achromobacter
           piechaudii ATCC 43553]
          Length = 322

 Score = 43.9 bits (102), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 35/152 (23%), Positives = 69/152 (45%), Gaps = 7/152 (4%)

Query: 87  LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKW 146
           +A ++R  +E     +     DF   ++    +   ++      + A + LT ++++F+W
Sbjct: 69  VAASTRKQYEYCASMLKEDFADFYPGQVKHGDVVEMLDQYADRQALANRMLTVLKLVFQW 128

Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL--AFEFLLYSGL 204
           A+ +  V  NPC+SV+R   +T   R  T+++  +      E   P L    +    +G 
Sbjct: 129 ALDRGRVEANPCVSVKRFV-QTSRDRLVTRDEYTRV----YEACPPWLQCVMDLCYLTGQ 183

Query: 205 RCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
           R  D  +  + HL ++    + QKTG  + VE
Sbjct: 184 RIGDVLKIELVHLHDDGIYFEQQKTGKRLVVE 215


>gi|291550383|emb|CBL26645.1| Site-specific recombinase XerD [Ruminococcus torques L2-14]
          Length = 356

 Score = 43.9 bits (102), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 39/196 (19%), Positives = 86/196 (43%), Gaps = 28/196 (14%)

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS-----Q 191
           ++++R  + +  +++ ++ NP L VE PK   + I     +++     +   G      Q
Sbjct: 120 MSALRSFYGYYFKRQIISKNPTLLVEMPKMHEKAIIRLDTDEIAMLLDYVDHGGDNLTGQ 179

Query: 192 PRLAFE-----------FLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELP 238
            +  FE            LL +G+R S+     +Q +  +NN  ++ T+K G  + V   
Sbjct: 180 RKAYFEKTKNRDLAILTLLLGTGIRVSECVGLDLQDIDFKNNGITV-TRKGGNQMVVYFG 238

Query: 239 DGFMKLLAMTPIGKETFFINNDKQK--MNATQFSIWFKAKATKAGVNKSAHGVRKFSATI 296
           +     L       +T+     KQ   ++  + +++   +  + GV    + V+K++  +
Sbjct: 239 EEVENAL-------KTYLYTTRKQAIPLSGHENALFLSTQRKRMGVQAVENMVKKYAREV 291

Query: 297 SADAGATAHELMATYG 312
           + +   T H+L +TYG
Sbjct: 292 TPNKKITPHKLRSTYG 307


>gi|297539666|ref|YP_003675435.1| tyrosine recombinase XerD [Methylotenera sp. 301]
 gi|297259013|gb|ADI30858.1| tyrosine recombinase XerD [Methylotenera sp. 301]
          Length = 302

 Score = 43.9 bits (102), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 47/232 (20%), Positives = 85/232 (36%), Gaps = 53/232 (22%)

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----F 185
           P S  + + SMR  +++ +R   ++++P + ++ PK      +   +E++    +     
Sbjct: 74  PRSISRLIASMRRFYRYLMRDNKISLDPTIQIQSPKLPRSLPKSLNEEEVIALLNAPNIV 133

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
            + G + R   E L   GLR S+    GV+                +  V + DG +++ 
Sbjct: 134 EAAGLRDRAMLELLYACGLRVSELV--GVK----------------VTEVSVSDGVVRIT 175

Query: 246 A------MTPIGKE-----------------------TFFINNDKQKMNATQFSIWFKAK 276
                  + P+G+E                         F+ N  + M    F    K  
Sbjct: 176 GKGSKTRLVPMGEEAVDWISRYLSDARSAILQKRLCDALFVTNRGEAMTRQAFWYLIKRY 235

Query: 277 ATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           A  AG+NK  S H +R   AT   + GA    +    G   +   + YT  A
Sbjct: 236 ALLAGINKHMSPHVLRHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTHVA 287


>gi|298531237|ref|ZP_07018637.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298508847|gb|EFI32753.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
          Length = 384

 Score = 43.9 bits (102), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 53/238 (22%), Positives = 98/238 (41%), Gaps = 17/238 (7%)

Query: 98  YFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEY--VAI 155
           + DQI R     D   +  + +++G       P+SA + +  +R +F  A++ E   V +
Sbjct: 140 HLDQITRD----DIMAMHQERLKNGA-----APASANRLVILLRYMFNLAIQWETPGVTV 190

Query: 156 NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA--FEFLLYSGLRCSDSCRAG 213
           NP   V   +   +  R  T+E++Q+      E   P L      L+ +G R S+   A 
Sbjct: 191 NPTKGVPLAEENNQRERYLTEEEVQRLCKAVKESENPLLEPIISMLILTGARKSEVLNAK 250

Query: 214 VQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI--GKETFFINNDKQKMNATQF 269
            +   L+   + I   K+G   TV L +  +++L   P   G E  F +    K   + +
Sbjct: 251 WEDLDLERKRWRIPYTKSGKPRTVPLSESALEVLRSVPKVEGSEYIFPSPVTGKPFNSIY 310

Query: 270 SIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           + W  A+      +   H +R   A+   +AG   +E+    G   +     Y+  +D
Sbjct: 311 NSWNTARIKSGLEDVKIHTLRHSFASFLVNAGRNLYEVGKLLGHTQMRTTMRYSHLSD 368


>gi|163843727|ref|YP_001628131.1| integrase/recombinase [Brucella suis ATCC 23445]
 gi|163674450|gb|ABY38561.1| Integrase/Recombinase [Brucella suis ATCC 23445]
          Length = 164

 Score = 43.9 bits (102), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 59/139 (42%), Gaps = 6/139 (4%)

Query: 205 RCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ-- 262
           RCS +     +      F ++  KTG  + + +     ++L  TP   ET  +    +  
Sbjct: 21  RCSKTVFLDGEAKSVEGFELRQGKTGKRLLLPITPILSEVLEATPRQGETVLVTAYGEPF 80

Query: 263 --KMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
             K    + + W  +     G   + HG+RK    I A+ GA+  ++M T G   +  AE
Sbjct: 81  SPKSLTGRMADWTASAKLPKGF--TLHGLRKTLGKILAEGGASTRQIMDTLGHDDIAHAE 138

Query: 321 TYTKGADRIRLGIKNSRRI 339
            YT+ A++ RL      R+
Sbjct: 139 LYTREAEQARLATDGMSRV 157


>gi|283769465|ref|ZP_06342361.1| phage integrase, N-terminal SAM domain protein [Bulleidia extructa
           W1219]
 gi|283103733|gb|EFC05119.1| phage integrase, N-terminal SAM domain protein [Bulleidia extructa
           W1219]
          Length = 297

 Score = 43.9 bits (102), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 78/194 (40%), Gaps = 25/194 (12%)

Query: 148 VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCS 207
           VR+    +   LSVE  K   + +  +T++D +Q           R   E +   GLR S
Sbjct: 100 VRKNETYLPSFLSVEEVK---QLLNSFTRDDPKQ--------ELNRTILELIYACGLRIS 148

Query: 208 DSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMK-----LLAMTPIGKE----TFF 256
           + C   V  +Q    I  I  +     I V +P+  +K     L  + PI  +    TFF
Sbjct: 149 ELCSLTVAQVQLETGILRILGKGNKERI-VPIPNQVVKDLDYYLNLIRPIWNQHKTNTFF 207

Query: 257 INNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWK 314
           IN+   ++ A    +  K KA + G  K  + H +R   AT    AGA    +    G  
Sbjct: 208 INHLGNRITARSIQLLLKQKAMECGFQKDITPHSLRHTYATHLLQAGADLRIIQELLGHS 267

Query: 315 TVDQAETYTKGADR 328
            +   E YT   +R
Sbjct: 268 NIKTTEIYTHVQNR 281


>gi|206975126|ref|ZP_03236040.1| DNA integration/recombination/invertion protein [Bacillus cereus
           H3081.97]
 gi|217959606|ref|YP_002338158.1| DNA integration/recombination/invertion protein [Bacillus cereus
           AH187]
 gi|229138832|ref|ZP_04267413.1| DNA integration/recombination/invertion protein [Bacillus cereus
           BDRD-ST26]
 gi|206746547|gb|EDZ57940.1| DNA integration/recombination/invertion protein [Bacillus cereus
           H3081.97]
 gi|217066212|gb|ACJ80462.1| DNA integration/recombination/invertion protein [Bacillus cereus
           AH187]
 gi|228644748|gb|EEL00999.1| DNA integration/recombination/invertion protein [Bacillus cereus
           BDRD-ST26]
          Length = 369

 Score = 43.9 bits (102), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 57/122 (46%), Gaps = 8/122 (6%)

Query: 94  SFESYFD----QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL---FKW 146
           +F SY       II   G     K+   HI+   +S      S    L   R+L      
Sbjct: 84  TFSSYSSNITYHIIPSIGMIALHKLNVIHIQKCYKSALDNGVSNNSILLLHRILKTALNL 143

Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRC 206
           AV+Q  ++ NP   VE PK++   I+ WT+E++++F    S+ S+  +A+   + +G+R 
Sbjct: 144 AVKQNIISRNPADFVEIPKKEKTSIQTWTEEEVKRF-LLHSQESRYHIAYLIAITTGMRL 202

Query: 207 SD 208
            +
Sbjct: 203 GE 204


>gi|325684289|gb|EGD26462.1| integrase/recombinase XerD [Lactobacillus delbrueckii subsp. lactis
           DSM 20072]
          Length = 301

 Score = 43.9 bits (102), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 47/214 (21%), Positives = 91/214 (42%), Gaps = 24/214 (11%)

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFW 186
           SS  + ++++   ++W VRQ+ +A++P   ++ PKR+       T+ +    ++Q     
Sbjct: 73  SSISRLVSTLSRFYQWLVRQQLIALDPMSQIDAPKREKRMPLALTEAEVGKLLEQPDLTT 132

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---IITVE------- 236
             G + R   E L  +G+R S++    +  +  ++  IK    G    +I V        
Sbjct: 133 DLGIRDRALVELLYATGIRVSEAVNLKLADVHADLQLIKVLGKGNKERLIPVSALALDWI 192

Query: 237 ---LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSA--HGV 289
              LP    +LL     GK + ++  + +    T+ ++W K K    +AG+ K    H +
Sbjct: 193 KRYLPVRDQQLLKR---GKSSDYLFLNSRGGQLTRQAVWQKIKKYCQQAGIAKDVTPHTL 249

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           R   AT   + GA    +    G   +   + YT
Sbjct: 250 RHSFATHLLEHGADLRVVQEILGHTDISTTQIYT 283


>gi|219646794|gb|ACL30946.1| integrase [Integrating expression vector pJEB403+drrA]
          Length = 332

 Score = 43.9 bits (102), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 54/222 (24%), Positives = 90/222 (40%), Gaps = 27/222 (12%)

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM-----Q 180
           RKH P++       +R +   AV  + +A NPC  +E+       +   T E++     +
Sbjct: 91  RKH-PTARRHAYNVLRAVMNTAVEDKLIAENPC-RIEQKAADERDVEALTPEELDIVAAE 148

Query: 181 QFKSF--------WSE---GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQ 227
            F+ +        W+    G    L  + +++ G+      R G   + N I   + KT 
Sbjct: 149 IFEHYRIAAYILAWTSLRFGELIELRRKDIVHDGMTMKLRVRRGASRVGNKIVVGNAKTV 208

Query: 228 KTGTIITV-----ELPDGFMKLLAMTPIGKETFFINNDK-QKMNATQFSIWFKAKATKAG 281
           ++   +TV     E+    MK       G E F +   +  +++ + F+   K    K G
Sbjct: 209 RSKRPVTVPPHVAEMIRAHMKDRTKMNKGPEAFLVTTTQGNRLSKSAFTKSLKRGYAKIG 268

Query: 282 VNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
             +   H +R   AT +A AGAT  ELMA  G  T   A  Y
Sbjct: 269 RPELRIHDLRAVGATFAAQAGATTKELMARLGHTTPRMAMKY 310


>gi|323489648|ref|ZP_08094875.1| tyrosine recombinase xerD [Planococcus donghaensis MPA1U2]
 gi|323396779|gb|EGA89598.1| tyrosine recombinase xerD [Planococcus donghaensis MPA1U2]
          Length = 300

 Score = 43.9 bits (102), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 50/227 (22%), Positives = 94/227 (41%), Gaps = 25/227 (11%)

Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK--RKTEGIRPWT 175
           H+R   E+ K TP +  + ++S+R   ++ +R+  V  +P + +E P+  +K   I    
Sbjct: 60  HLRHLKETTK-TPRTVARHISSIRSFHQFMIRERIVETDPTVHLEMPQMDKKLPNILSIE 118

Query: 176 KED--MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--- 230
           + D  +Q   +  + G + +   E L  SG+R S+     ++ +   +  ++    G   
Sbjct: 119 EVDALIQVPATNKANGLRDQAMLELLYASGMRVSECINLDIEDVHLTMGFVRCTGKGGKE 178

Query: 231 ----------TIITVELPDGFMKLLAMTPIGKET--FFINNDKQKMNATQFSIWFKAKAT 278
                     T     L  G + L+     G++T   FIN   +++    F    K  A 
Sbjct: 179 RIIPLGKSALTSCQTYLEQGRIDLVKS---GEKTDALFINQRGKRLTRQGFWKLLKQHAQ 235

Query: 279 KAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           KAG+ K  + H +R   AT   + GA    +    G   +   + YT
Sbjct: 236 KAGIQKELTPHTLRHSFATHLLENGADIRAVQEMLGHADISTTQIYT 282


>gi|198277388|ref|ZP_03209919.1| hypothetical protein BACPLE_03600 [Bacteroides plebeius DSM 17135]
 gi|198269886|gb|EDY94156.1| hypothetical protein BACPLE_03600 [Bacteroides plebeius DSM 17135]
          Length = 303

 Score = 43.9 bits (102), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 54/224 (24%), Positives = 89/224 (39%), Gaps = 28/224 (12%)

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-- 187
           P S  + L+ +R  F++ + ++Y+  +P   +E P+         T E++ +        
Sbjct: 71  PRSQARILSGIRSFFRFLLLEDYIQQDPSELLESPQIGKHLPDVLTVEEIDRLIGSIDRS 130

Query: 188 --EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-----------IIT 234
             EG + R   E L   GLR S+ C   +  L      IK +  G+           I  
Sbjct: 131 TREGQRNRAILETLYSCGLRVSELCNLKLSDLYLKEKFIKVEGKGSKQRLVPISPRAIHE 190

Query: 235 VEL--PD---GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287
           +EL  PD   G +K     P  ++  FI+   + ++        K  A + G+ K  S H
Sbjct: 191 LELYFPDRNEGLIK-----PGYEDFVFISRFGKNISRIMVFHIIKELAEQIGLKKTISPH 245

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
             R   AT   + GA    +    G +++   E YT   DR RL
Sbjct: 246 TFRHSFATHLLEGGANLRAIQCMLGHESIGTTEIYTH-LDRSRL 288


>gi|261218687|ref|ZP_05932968.1| conserved hypothetical protein [Brucella ceti M13/05/1]
 gi|261321815|ref|ZP_05961012.1| conserved hypothetical protein [Brucella ceti M644/93/1]
 gi|260923776|gb|EEX90344.1| conserved hypothetical protein [Brucella ceti M13/05/1]
 gi|261294505|gb|EEX98001.1| conserved hypothetical protein [Brucella ceti M644/93/1]
          Length = 323

 Score = 43.9 bits (102), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 57/266 (21%), Positives = 102/266 (38%), Gaps = 15/266 (5%)

Query: 62  NSPRKKPTTLKW--LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-----FDYRKI 114
           N  R  P   K+  +I+ Y+ S  +  LA +++ ++  + D+I +K GD     FD  + 
Sbjct: 28  NDSRVIPDASKFRAVITAYKSSHDYQKLADSTKRNWNGWLDRIGKKFGDLSIAQFDLPQK 87

Query: 115 TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRP 173
               IR         P +A   +  +  +  +AV     ++ NPC  +++  +       
Sbjct: 88  IRPVIRKWRGEFADKPRTADYGMQVLSRVLSYAVDPLGKISQNPCEGIKQLYKNDRAAII 147

Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233
           WT +D+ + K+  S   +   A +   ++GLR  D  R    H+ +N   + T K+    
Sbjct: 148 WTDQDIARLKTKCS--PEVAWAVDLAAHTGLRAGDLLRLSWSHITDNAIILPTGKSRHTK 205

Query: 234 TVELP--DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF---KAKATKAGVNKSAHG 288
              +P       LL   P        N  K       F   F   + +A     +   H 
Sbjct: 206 EAVIPLYAELRALLQTIPRRSPIVLTNTRKAPWTVNGFGSSFSDCREEAKLGDRDLHFHD 265

Query: 289 VRKFSATISADAGATAHELMATYGWK 314
            R  +AT    AG +   +    GW+
Sbjct: 266 FRGTAATKFYIAGLSERVIAEIMGWE 291


>gi|255036556|ref|YP_003087177.1| tyrosine recombinase XerD [Dyadobacter fermentans DSM 18053]
 gi|254949312|gb|ACT94012.1| tyrosine recombinase XerD [Dyadobacter fermentans DSM 18053]
          Length = 298

 Score = 43.9 bits (102), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 51/230 (22%), Positives = 88/230 (38%), Gaps = 58/230 (25%)

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK--RKTEGIRPWTKEDMQQFKSFWS-- 187
           S  + L+ ++  FK+ + +  +  +P   +E P+  RK   +  +  E+++   S     
Sbjct: 71  SQARMLSGIKAFFKYLLLENEITEDPTELLESPRLPRKLPDVLSY--EEIETMLSAIDHS 128

Query: 188 --EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
             EG++ R   E L  SGLR S+        L N  F I               GF+++L
Sbjct: 129 TPEGTRNRAIMEVLYSSGLRVSELTDL---QLTNCHFDI---------------GFLRIL 170

Query: 246 A------MTPIGKETF------------------------FINNDKQKMNATQFSIWFKA 275
                  + PIG+E                          F+N    +++     +  K 
Sbjct: 171 GKGDKMRLVPIGREAIKYTQIYLDHIRNDIAPQKGSEDIVFLNRRGGQLSRVMIFLMIKD 230

Query: 276 KATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
            A KAG++K  S H  R   AT   + GA+   +    G +++   E YT
Sbjct: 231 TAEKAGIHKNVSPHTFRHSFATHLIEGGASLRAVQEMLGHESITTTEIYT 280


>gi|162452703|ref|YP_001615070.1| site-specific recombinase [Sorangium cellulosum 'So ce 56']
 gi|161163285|emb|CAN94590.1| site-specific recombinase [Sorangium cellulosum 'So ce 56']
          Length = 323

 Score = 43.5 bits (101), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 46/215 (21%), Positives = 89/215 (41%), Gaps = 16/215 (7%)

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           + SSA + L+++R   ++ +R+  +  +PC  VERP+      +  + +++        +
Sbjct: 95  SASSAARHLSAVRGFVRFLLRERRIERDPCALVERPRVGRRLPKVLSFDEIALLIEAPEQ 154

Query: 189 GS----QPRLAFEFLLYSGLRCSDSCR---AGVQHLQNNIFSIKTQKTGTIITVELP--- 238
           G+    + R     +  +GLR S+  R   A +   +  + ++       ++ +  P   
Sbjct: 155 GTFKGLRDRAMLHVMYAAGLRVSEVVRLKLADIDRRKGIVMALGKGGKRRLVPLGEPALA 214

Query: 239 --DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW--FKAKATKAGVNK--SAHGVRKF 292
             D +++L A  P    T  +    +    T+ ++W      A   G+ K  S H +R  
Sbjct: 215 AIDAYLELRATHPRSAATQVLFLSPRGGPLTRQAVWKLLGGYARAVGIAKPSSPHKLRHS 274

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
            AT   + GA    + A  G   V   E YT  AD
Sbjct: 275 FATHLLEGGADLRSVQALLGHANVVTTEIYTHLAD 309


>gi|254704264|ref|ZP_05166092.1| Phage integrase [Brucella suis bv. 3 str. 686]
 gi|261754933|ref|ZP_05998642.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686]
 gi|261744686|gb|EEY32612.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686]
          Length = 341

 Score = 43.5 bits (101), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 60/268 (22%), Positives = 104/268 (38%), Gaps = 19/268 (7%)

Query: 62  NSPRKKPTTLKW--LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-----FDY-RK 113
           N  R  P   K+  +I+ Y+ S  +  LA +++ ++  + D+I +K GD     FD  +K
Sbjct: 46  NDSRVIPDASKFRAVITAYKSSHDYQKLADSTKRNWNGWLDRIGKKFGDLSIAQFDLPQK 105

Query: 114 I--TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
           I    +  R     +  T    +Q L+  RVL         ++ NPC  +++  +     
Sbjct: 106 IRPVIRKWRGEFADKPRTADYGMQVLS--RVLSYAVDPLGKISQNPCEGIKQLYKNDRAA 163

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
             WT +D+ + K+  S   +   A +   ++GLR  D  R    H+ +N   + T K+  
Sbjct: 164 IIWTDQDIARLKTKCS--PEVAWAVDLAAHAGLRAGDLLRLSWSHITDNAIILPTGKSRH 221

Query: 232 IITVELP--DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF---KAKATKAGVNKSA 286
                +P       LL   P        N  K       F   F   + +A     +   
Sbjct: 222 TKEAVIPLYAELRALLQTIPRRSPIVLTNTRKAPWTVNGFGSSFSDCREEAKLGDRDLHF 281

Query: 287 HGVRKFSATISADAGATAHELMATYGWK 314
           H  R  +AT    AG +   +    GW+
Sbjct: 282 HDFRGTAATKFYIAGLSERVIAEIMGWE 309


>gi|320321214|gb|EFW77351.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. glycinea str. B076]
          Length = 320

 Score = 43.5 bits (101), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 54/248 (21%), Positives = 95/248 (38%), Gaps = 34/248 (13%)

Query: 99  FDQIIRKSGDFDYRKITTKHI---RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI 155
           F   I  +   D+R++T  H+   R+ +E R    ++  + L ++  LF   +    VA 
Sbjct: 52  FSSFIGLASADDFRQVTRSHVLAWRADLEQRGLAGATIRRKLAALASLFDHLLDNNAVAG 111

Query: 156 -NPCLSVERPK-RKTEGIRPWTKEDMQQFKSFWS-------EGSQPRLAFEFLLYSGLRC 206
            NP   V+RP+    EG  P   +   Q K+          +G + R     LLY GLR 
Sbjct: 112 GNPVHGVKRPRIESNEGKTPALGD--HQAKALLEAPDESTLKGRRDRAMLAVLLYHGLRR 169

Query: 207 SDSCRAGVQHLQN--NIFSIKTQKTGTIITVELPDGFMKLLAMTPI--GKETFFINNDKQ 262
            ++ +  V  +Q    I  +K    G         G ++ L + P+  G+   ++     
Sbjct: 170 EEAAQLQVSDIQERRGIQHLKIHGKG---------GKVRYLPLHPVAAGRIHLYLERSGH 220

Query: 263 KMNATQFSIWFKAKATKAGVNKSAHGVRKF------SATISADAGATAHELMATYGWKTV 316
            ++  +  ++   +    G   SA+G+          A I  D G   H L AT     +
Sbjct: 221 HLDDKKVPLFISLRGKSTGAGVSANGIYTVVEAYAKKAGIEVD-GLGVHGLRATAATNAL 279

Query: 317 DQAETYTK 324
           +      K
Sbjct: 280 EHEADIAK 287


>gi|297543544|ref|YP_003675846.1| integrase family protein [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|296841319|gb|ADH59835.1| integrase family protein [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 373

 Score = 43.5 bits (101), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 38/167 (22%), Positives = 76/167 (45%), Gaps = 8/167 (4%)

Query: 48  MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKS 106
           ++ +     K E+I   +    TL+  I+E+ K       A  + IS +S  +  II   
Sbjct: 44  LAEIIAKIEKNEFIEPSK---ITLQQFINEWLKIYGEPKWAPKTLISNKSLINNYIIPNL 100

Query: 107 GDFDYRKITTKHIRS--GVESRKHTPSSAIQFLTSM-RVLFKWAVRQEYVAINPCLSVER 163
           G  + +K+    I+        K   ++ + ++  +   + K+AV+ +Y+A NPC  VE 
Sbjct: 101 GHIELQKLKPVEIQKFYNFLKEKQLSNTTVNYVHKLLNQVLKFAVKWQYIAKNPCELVEA 160

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210
           PK+  +    W  E +++ K  + + +   +     L++GLR  + C
Sbjct: 161 PKKDKKEFVTWNFEHVKKAKKIFKD-TPIYIHVMIALHTGLRLGEIC 206


>gi|256044630|ref|ZP_05447534.1| phage-related integrase [Brucella melitensis bv. 1 str. Rev.1]
 gi|265991056|ref|ZP_06103613.1| conserved hypothetical protein [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|263001840|gb|EEZ14415.1| conserved hypothetical protein [Brucella melitensis bv. 1 str.
           Rev.1]
          Length = 341

 Score = 43.5 bits (101), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 57/266 (21%), Positives = 102/266 (38%), Gaps = 15/266 (5%)

Query: 62  NSPRKKPTTLKW--LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-----FDYRKI 114
           N  R  P   K+  +I+ Y+ S  +  LA +++ ++  + D+I +K GD     FD  + 
Sbjct: 46  NDSRVIPDASKFRAVITAYKSSHDYQKLADSTKRNWNGWLDRIGKKFGDLSITQFDLPQK 105

Query: 115 TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRP 173
               IR         P +A   +  +  +  +AV     ++ NPC  +++  +       
Sbjct: 106 IRPVIRKWRGEFADKPRTADYGMQVLSRVLSYAVDPLGKISQNPCEGIKQLYKNDRAAII 165

Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233
           WT +D+ + K+  S   +   A +   ++GLR  D  R    H+ +N   + T K+    
Sbjct: 166 WTDQDIARLKTKCS--PEVAWAVDLAAHTGLRAGDLLRLSWSHITDNAIILPTGKSRHTK 223

Query: 234 TVELP--DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF---KAKATKAGVNKSAHG 288
              +P       LL   P        N  K       F   F   + +A     +   H 
Sbjct: 224 EAVIPLYAELRALLQTIPRRSPIVLTNTRKAPWTVNGFGSSFSDCREEAKLGDRDLHFHD 283

Query: 289 VRKFSATISADAGATAHELMATYGWK 314
            R  +AT    AG +   +    GW+
Sbjct: 284 FRGTAATKFYIAGLSERVIAEIMGWE 309


>gi|218442243|ref|YP_002380571.1| integrase [Cyanothece sp. PCC 7424]
 gi|218175384|gb|ACK74114.1| integrase family protein [Cyanothece sp. PCC 7424]
          Length = 289

 Score = 43.5 bits (101), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 88/207 (42%), Gaps = 19/207 (9%)

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK-TEGIRPWTKEDMQQFKSFWSE 188
           PSS    + +++ L  +  +   +  N  ++++ PK K T   R   +E++    +   +
Sbjct: 73  PSSQGTAMAAIKSLLSFGHQIGVLPTNVGIALKSPKVKDTLNERILNEEEVMTMIANEPD 132

Query: 189 GSQPRLAFEFLLYSGLRCSDSC-------RAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241
             + R+    L   GLR S+ C       ++  Q  Q  +F     K G   TV LP G 
Sbjct: 133 -ERNRVLLRLLYAGGLRVSELCALKWKDLKSRNQSGQVTVFG----KGGKTRTVLLPSGV 187

Query: 242 MKLLAMT---PIGKETFFINN-DKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSAT 295
            + L        G +  F +      ++ TQ     KA A++AG+  N S H +R   A+
Sbjct: 188 WQELCQIRGKSRGADPVFPSRMGGGHLDRTQVYRIVKAAASRAGIEGNVSPHWLRHAHAS 247

Query: 296 ISADAGATAHELMATYGWKTVDQAETY 322
            S D GA  H + AT G  +V   E Y
Sbjct: 248 HSLDRGAPLHLVQATLGHSSVATTERY 274


>gi|326381298|ref|ZP_08202992.1| phage integrase family protein [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326199545|gb|EGD56725.1| phage integrase family protein [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 385

 Score = 43.5 bits (101), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 94/217 (43%), Gaps = 30/217 (13%)

Query: 11  VTKERTRHGKIIYYFR-------KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63
           +T+ + ++G++ Y FR        G   R R  YP +      Y    T     R Y+  
Sbjct: 14  ITRRKAKNGRVSYEFRADVGVKPDGSRDRRRFTYPTKKEAQAEYRRITTEVAAGR-YVGR 72

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAV--NSRISFESYFDQIIRKSGDFDYRKITTKHIR- 120
            R         ++E+ ++   G   V  N+  ++      I+R  G  + +++T  HI  
Sbjct: 73  SR-------VTVAEHVEAWLAGKRDVRPNTLRNYTDAAKPIVRDLGGLELQRLTKAHIDK 125

Query: 121 --SGV---ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK---TEGIR 172
              G+   + R ++  SA   L  +R + K A RQ  ++ +P   VE PK K    E + 
Sbjct: 126 FLGGLTRRDGRPYSTDSARLVLAVLRQVTKDAHRQGIISRDPSEFVEPPKAKRVAAENLD 185

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLL-YSGLRCSD 208
            WT+E+   F+   +E    R+A  +LL   GLR S+
Sbjct: 186 VWTREEANLFRKHTAED---RMAACWLLTLCGLRRSE 219


>gi|23501849|ref|NP_697976.1| phage integrase family site specific recombinase [Brucella suis
           1330]
 gi|62289895|ref|YP_221688.1| phage integrase family site specific recombinase [Brucella abortus
           bv. 1 str. 9-941]
 gi|82699825|ref|YP_414399.1| phage integrase [Brucella melitensis biovar Abortus 2308]
 gi|161618919|ref|YP_001592806.1| hypothetical protein BCAN_A0980 [Brucella canis ATCC 23365]
 gi|163843233|ref|YP_001627637.1| hypothetical protein BSUIS_A1008 [Brucella suis ATCC 23445]
 gi|189024139|ref|YP_001934907.1| Phage integrase [Brucella abortus S19]
 gi|225627444|ref|ZP_03785481.1| phage integrase family site specific recombinase [Brucella ceti
           str. Cudo]
 gi|237815396|ref|ZP_04594394.1| phage integrase family site specific recombinase [Brucella abortus
           str. 2308 A]
 gi|254697338|ref|ZP_05159166.1| Phage integrase [Brucella abortus bv. 2 str. 86/8/59]
 gi|254706834|ref|ZP_05168662.1| Phage integrase [Brucella pinnipedialis M163/99/10]
 gi|254730236|ref|ZP_05188814.1| Phage integrase [Brucella abortus bv. 4 str. 292]
 gi|256061062|ref|ZP_05451218.1| Phage integrase [Brucella neotomae 5K33]
 gi|256159686|ref|ZP_05457439.1| Phage integrase [Brucella ceti M490/95/1]
 gi|256254954|ref|ZP_05460490.1| Phage integrase [Brucella ceti B1/94]
 gi|260168683|ref|ZP_05755494.1| Phage integrase [Brucella sp. F5/99]
 gi|260545355|ref|ZP_05821096.1| phage integrase [Brucella abortus NCTC 8038]
 gi|260566487|ref|ZP_05836957.1| phage integrase [Brucella suis bv. 4 str. 40]
 gi|260757928|ref|ZP_05870276.1| conserved hypothetical protein [Brucella abortus bv. 4 str. 292]
 gi|260761751|ref|ZP_05874094.1| conserved hypothetical protein [Brucella abortus bv. 2 str.
           86/8/59]
 gi|261222140|ref|ZP_05936421.1| conserved hypothetical protein [Brucella ceti B1/94]
 gi|261314300|ref|ZP_05953497.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
 gi|261325065|ref|ZP_05964262.1| conserved hypothetical protein [Brucella neotomae 5K33]
 gi|261758160|ref|ZP_06001869.1| phage integrase [Brucella sp. F5/99]
 gi|265998104|ref|ZP_06110661.1| conserved hypothetical protein [Brucella ceti M490/95/1]
 gi|23347786|gb|AAN29891.1| site-specific recombinase, phage integrase family [Brucella suis
           1330]
 gi|62196027|gb|AAX74327.1| site-specific recombinase, phage integrase family [Brucella abortus
           bv. 1 str. 9-941]
 gi|82615926|emb|CAJ10939.1| Phage integrase [Brucella melitensis biovar Abortus 2308]
 gi|161335730|gb|ABX62035.1| Hypothetical protein BCAN_A0980 [Brucella canis ATCC 23365]
 gi|163673956|gb|ABY38067.1| Hypothetical protein BSUIS_A1008 [Brucella suis ATCC 23445]
 gi|189019711|gb|ACD72433.1| Phage integrase [Brucella abortus S19]
 gi|225617449|gb|EEH14494.1| phage integrase family site specific recombinase [Brucella ceti
           str. Cudo]
 gi|237790233|gb|EEP64443.1| phage integrase family site specific recombinase [Brucella abortus
           str. 2308 A]
 gi|260096762|gb|EEW80637.1| phage integrase [Brucella abortus NCTC 8038]
 gi|260156005|gb|EEW91085.1| phage integrase [Brucella suis bv. 4 str. 40]
 gi|260668246|gb|EEX55186.1| conserved hypothetical protein [Brucella abortus bv. 4 str. 292]
 gi|260672183|gb|EEX59004.1| conserved hypothetical protein [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260920724|gb|EEX87377.1| conserved hypothetical protein [Brucella ceti B1/94]
 gi|261301045|gb|EEY04542.1| conserved hypothetical protein [Brucella neotomae 5K33]
 gi|261303326|gb|EEY06823.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
 gi|261738144|gb|EEY26140.1| phage integrase [Brucella sp. F5/99]
 gi|262552572|gb|EEZ08562.1| conserved hypothetical protein [Brucella ceti M490/95/1]
          Length = 341

 Score = 43.5 bits (101), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 60/268 (22%), Positives = 104/268 (38%), Gaps = 19/268 (7%)

Query: 62  NSPRKKPTTLKW--LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-----FDY-RK 113
           N  R  P   K+  +I+ Y+ S  +  LA +++ ++  + D+I +K GD     FD  +K
Sbjct: 46  NDSRVIPDASKFRAVITAYKSSHDYQKLADSTKRNWNGWLDRIGKKFGDLSIAQFDLPQK 105

Query: 114 I--TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
           I    +  R     +  T    +Q L+  RVL         ++ NPC  +++  +     
Sbjct: 106 IRPVIRKWRGEFADKPRTADYGMQVLS--RVLSYAVDPLGKISQNPCEGIKQLYKNDRAA 163

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
             WT +D+ + K+  S   +   A +   ++GLR  D  R    H+ +N   + T K+  
Sbjct: 164 IIWTDQDIARLKTKCS--PEVAWAVDLAAHTGLRAGDLLRLSWSHITDNAIILPTGKSRH 221

Query: 232 IITVELP--DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF---KAKATKAGVNKSA 286
                +P       LL   P        N  K       F   F   + +A     +   
Sbjct: 222 TKEAVIPLYAELRALLQTIPRRSPIVLTNTRKAPWTVNGFGSSFSDCREEAKLGDRDLHF 281

Query: 287 HGVRKFSATISADAGATAHELMATYGWK 314
           H  R  +AT    AG +   +    GW+
Sbjct: 282 HDFRGTAATKFYIAGLSERVIAEIMGWE 309


>gi|227431702|ref|ZP_03913732.1| site-specific recombinase XerD [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
 gi|227352526|gb|EEJ42722.1| site-specific recombinase XerD [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
          Length = 298

 Score = 43.5 bits (101), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 57/237 (24%), Positives = 94/237 (39%), Gaps = 30/237 (12%)

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-- 188
           SS I+ +T++R  F + VR++ VA NP   V  PK+        + E++ +      E  
Sbjct: 71  SSVIRMVTTLRNFFGYLVREKVVAHNPMNDVRPPKKAEHLPAVLSIEEIDRLLQAPIEDT 130

Query: 189 --GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
             G + R   E +  +GLR S+     +  L   +  I+T   G    + +P G + +  
Sbjct: 131 PLGLRNRTLIEVMYATGLRVSELVNLKMSDLHLQLGLIQTLGKGDKERI-IPIGEIAIDW 189

Query: 247 MTPIGKET-----------FFINNDKQKMNATQFSIW--FKAKATKAGVNK--SAHGVRK 291
           +T    E+           +   ND+    + Q  IW   K   T AG+ K  S H +R 
Sbjct: 190 LTRYFNESRIVLLKDKESPYVFLNDRGNQISRQ-GIWKIIKKLVTTAGITKDVSPHTLRH 248

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
             AT   + GA    +    G   +   + YT  +          +R+S V D   P
Sbjct: 249 SFATHILENGADLRIVQELLGHADISTTQIYTHIS---------KKRLSEVYDEYHP 296


>gi|77918237|ref|YP_356052.1| site-specific recombinase [Pelobacter carbinolicus DSM 2380]
 gi|77544320|gb|ABA87882.1| site-specific recombinase [Pelobacter carbinolicus DSM 2380]
          Length = 332

 Score = 43.5 bits (101), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 46/202 (22%), Positives = 85/202 (42%), Gaps = 15/202 (7%)

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---- 192
           L+++R  F++ VRQ  +A++P  +V  PKR+    +  T +++       ++G +P    
Sbjct: 111 LSAVRSFFRYLVRQGELAVSPAETVATPKREQYLPKVLTVDEVFALIK-AADGDEPLTVR 169

Query: 193 -RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---IITVELP--DGFMKLLA 246
            R   E    SGLR  +     V H+      ++ +  G    I+ +  P      + LA
Sbjct: 170 DRAILELFYSSGLRVGELEGLDVGHVDLRDGLVRVRGKGDKERIVPMGRPARQALGRYLA 229

Query: 247 M--TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGA 302
               P  ++  F+N    ++++       K     AG+ K A  H +R   AT   D GA
Sbjct: 230 ERGVPDREQPLFLNYRGGRLSSRSIERNLKKWLLCAGILKDASPHALRHTFATHLLDGGA 289

Query: 303 TAHELMATYGWKTVDQAETYTK 324
               +    G  ++   + YT+
Sbjct: 290 DLRAIQELLGHASLSTTQKYTQ 311


>gi|225570002|ref|ZP_03779027.1| hypothetical protein CLOHYLEM_06097 [Clostridium hylemonae DSM
           15053]
 gi|225161472|gb|EEG74091.1| hypothetical protein CLOHYLEM_06097 [Clostridium hylemonae DSM
           15053]
          Length = 384

 Score = 43.5 bits (101), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 2/84 (2%)

Query: 127 KHTPSSAIQFLTS-MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP-WTKEDMQQFKS 184
           KH  S+ ++ + + +  +F +AVR   +  NPCL+     +K  G +  W  E+   F  
Sbjct: 142 KHYSSTYLKAMNNQLSTVFNYAVRYYNLPSNPCLAAGSMGKKQAGQKTFWKPEEFHIFLE 201

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSD 208
           ++SE  +  L F  L Y+G+R  +
Sbjct: 202 YFSENMEMYLIFSLLYYTGVRIGE 225


>gi|52079925|ref|YP_078716.1| lambda integrase-like, N-terminal,DNA breaking-rejoining enzyme,
           catalytic core [Bacillus licheniformis ATCC 14580]
 gi|52785296|ref|YP_091125.1| hypothetical protein BLi01531 [Bacillus licheniformis ATCC 14580]
 gi|52003136|gb|AAU23078.1| Hypothetical Lambda integrase-like, N-terminal,DNA
           breaking-rejoining enzyme, catalytic core [Bacillus
           licheniformis ATCC 14580]
 gi|52347798|gb|AAU40432.1| putative protein [Bacillus licheniformis ATCC 14580]
          Length = 352

 Score = 43.5 bits (101), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 50/215 (23%), Positives = 85/215 (39%), Gaps = 24/215 (11%)

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           +P  A   L +MR +F + +++  ++ NP   + + K+    I+  + E+M+Q      +
Sbjct: 106 SPKYANDHLKTMRAVFTFCIKENMISENPFQKINKVKQPEPVIQILSVEEMKQL----LK 161

Query: 189 GSQPRLAFEFLLYSGLRC--SDSCRAG---VQHLQNNIFS-----IKTQKTGTII--TVE 236
               R   EF  Y  + C  +  CR G      ++N  F      ++ QKT T     + 
Sbjct: 162 TPNKRKFSEFRDYVVMMCLINSMCRIGEIVTLEIENINFELSYIILEAQKTKTRKGRMIP 221

Query: 237 LPDGFMKLLAMTPIGKETF------FINNDKQKMNATQFSIWFKAKATKAGVNKSAHG-- 288
           L    M+LL    +    F      FI  +  ++    F       A +AG+NK  H   
Sbjct: 222 LDKNTMQLLKKLLLRNTRFKPSKYVFITEEGTRLTTDNFRKRLADYAHQAGINKRVHPHL 281

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
            R  +A++   AG     L    G K +     YT
Sbjct: 282 FRHTAASMFLQAGGDLRHLQTIIGHKDLRMVLRYT 316


>gi|237738086|ref|ZP_04568567.1| conserved hypothetical protein [Fusobacterium mortiferum ATCC 9817]
 gi|229419966|gb|EEO35013.1| conserved hypothetical protein [Fusobacterium mortiferum ATCC 9817]
          Length = 353

 Score = 43.5 bits (101), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 63/257 (24%), Positives = 101/257 (39%), Gaps = 56/257 (21%)

Query: 121 SGVESRKHTPSSAIQFLT---SMRVLFKWAVRQEYVAINPCLSV-ERPKRKTEGIRPWTK 176
           SGV S K+TP S     T    +  +F +AV+   +  NPC       K+K E +  WT 
Sbjct: 113 SGV-SIKNTPYSPTYLKTINNQLTAIFNYAVKYHNMKENPCHKAGSMGKKKAEEMIIWTP 171

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSI---------- 224
           E+ ++F  F        + F  L ++G+R  +     ++   L+N   SI          
Sbjct: 172 EEFEKFSQFIKNKMPNYVGFNILFWTGIRIGELLALTLKDIDLRNKTISISKSYQRLEGE 231

Query: 225 ------KTQKTGTIIT-----VELPDGFMKLLA-------MTPIGKETFFINNDKQKMNA 266
                 KT K+  ++T     VEL + ++K+L        + P  K  F   ND      
Sbjct: 232 DVITAPKTTKSKRVVTIPDSVVELLERYLKMLYKPSKTMRLFPYTKHLF--END------ 283

Query: 267 TQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQ-----AE 320
                  +  + KAG+ K   H +R   A+   + G     +    G + ++      A 
Sbjct: 284 ------LRIYSEKAGLKKIRIHDLRHSHASYLFNNGVDILTIAKRLGHENIETTLGIYAH 337

Query: 321 TYTKGADRIRLGIKNSR 337
           TYT  AD   L I N +
Sbjct: 338 TYT-SADEKLLKILNKK 353


>gi|62290365|ref|YP_222158.1| phage integrase family site specific recombinase [Brucella abortus
           bv. 1 str. 9-941]
 gi|82700287|ref|YP_414861.1| phage integrase [Brucella melitensis biovar Abortus 2308]
 gi|237815868|ref|ZP_04594865.1| phage integrase family site specific recombinase [Brucella abortus
           str. 2308 A]
 gi|254689663|ref|ZP_05152917.1| Phage integrase [Brucella abortus bv. 6 str. 870]
 gi|254697806|ref|ZP_05159634.1| Phage integrase [Brucella abortus bv. 2 str. 86/8/59]
 gi|254730695|ref|ZP_05189273.1| Phage integrase [Brucella abortus bv. 4 str. 292]
 gi|256257914|ref|ZP_05463450.1| Phage integrase [Brucella abortus bv. 9 str. C68]
 gi|260546903|ref|ZP_05822642.1| phage integrase [Brucella abortus NCTC 8038]
 gi|260755194|ref|ZP_05867542.1| integrase/recombinase [Brucella abortus bv. 6 str. 870]
 gi|260758413|ref|ZP_05870761.1| integrase/recombinase [Brucella abortus bv. 4 str. 292]
 gi|260762239|ref|ZP_05874582.1| integrase/recombinase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260884210|ref|ZP_05895824.1| integrase/recombinase [Brucella abortus bv. 9 str. C68]
 gi|297248750|ref|ZP_06932468.1| phage integrase [Brucella abortus bv. 5 str. B3196]
 gi|62196497|gb|AAX74797.1| site-specific recombinase, phage integrase family [Brucella abortus
           bv. 1 str. 9-941]
 gi|82616388|emb|CAJ11449.1| Phage integrase [Brucella melitensis biovar Abortus 2308]
 gi|237789166|gb|EEP63377.1| phage integrase family site specific recombinase [Brucella abortus
           str. 2308 A]
 gi|260095953|gb|EEW79830.1| phage integrase [Brucella abortus NCTC 8038]
 gi|260668731|gb|EEX55671.1| integrase/recombinase [Brucella abortus bv. 4 str. 292]
 gi|260672671|gb|EEX59492.1| integrase/recombinase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260675302|gb|EEX62123.1| integrase/recombinase [Brucella abortus bv. 6 str. 870]
 gi|260873738|gb|EEX80807.1| integrase/recombinase [Brucella abortus bv. 9 str. C68]
 gi|297175919|gb|EFH35266.1| phage integrase [Brucella abortus bv. 5 str. B3196]
          Length = 164

 Score = 43.5 bits (101), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 33/137 (24%), Positives = 59/137 (43%), Gaps = 2/137 (1%)

Query: 205 RCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM 264
           RCS +     +    + F ++  KTG  + + +     ++L  TP   ET  +    +  
Sbjct: 21  RCSKTVFLDGEAKSVDGFELRQGKTGKRLFLPITPILSEVLEATPRQGETVLVTAYGEPF 80

Query: 265 NATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           +    +         A + K  + HG+RK    I A+ GA+  ++M T G   +  AE Y
Sbjct: 81  SPKSLTGRMVDWTASAKLPKGFTLHGLRKTLGKILAEGGASTRQIMDTLGHDDIAHAELY 140

Query: 323 TKGADRIRLGIKNSRRI 339
           T+ A++ RL      R+
Sbjct: 141 TREAEQARLATDGMSRV 157


>gi|260893825|ref|YP_003239922.1| integrase family protein [Ammonifex degensii KC4]
 gi|260865966|gb|ACX53072.1| integrase family protein [Ammonifex degensii KC4]
          Length = 315

 Score = 43.5 bits (101), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 45/191 (23%), Positives = 83/191 (43%), Gaps = 22/191 (11%)

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGI-RPWTKEDMQQF------KSFWSEGSQP 192
           +++ F W VR+ Y+  NP   ++  KR+ +G  RP + E +Q+       KSF   G + 
Sbjct: 86  LKLFFAWCVREGYLPANPVDGIK--KRREDGTPRPVSLEAVQKLLTACDRKSF--TGLRD 141

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-------KTQKTGT-IITVELPDGFMKL 244
                F L +G+R  ++ +   +H       +       KT+   T +I+ +      +L
Sbjct: 142 YALILFQLDTGVRPGEALKLLPEHFNLRSLEVYIPAQVSKTRAARTVVISPQTARAVQRL 201

Query: 245 LAMTPIG---KETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAG 301
           LA+ P     K   F +   Q M  + ++      + +AGV  + + +R  +AT     G
Sbjct: 202 LAVRPAAWGSKAPVFCSETGQPMQVSSWTHRLALISRRAGVKVTPYQLRHTAATELLRGG 261

Query: 302 ATAHELMATYG 312
           A+A  +    G
Sbjct: 262 ASAFAVARQLG 272


>gi|330752024|emb|CBL80536.1| tyrosine recombinase [uncultured Flavobacteria bacterium]
          Length = 323

 Score = 43.5 bits (101), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 49/217 (22%), Positives = 84/217 (38%), Gaps = 18/217 (8%)

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK--RKTEGIRPWTKED--MQ 180
           +++  P S  + ++ ++  F + V +EY   NP   +E PK  RK   I    + D  + 
Sbjct: 89  AKELNPRSQSRIISGLKGFFNYLVFEEYRTTNPLDLIESPKIGRKLPDILSIEEIDAIIS 148

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT--------I 232
                  +G + R   E L   GLR S+     +  L  +   IK    G          
Sbjct: 149 TIDLTKPQGERNRGIIEVLYGCGLRVSELINLKISDLFFDEGFIKVTGKGNKQRFVPIGS 208

Query: 233 ITVELPDGFMKLL----AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286
           +T++  D +   +     + P  ++T F+N     +         K    KAG++K  S 
Sbjct: 209 LTIKFIDIYRNEIRVHQVIKPNAQDTLFLNRRGNGLTRAMIFHIVKELTEKAGIHKKISP 268

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           H  R   AT   + GA    +    G +++   E YT
Sbjct: 269 HTFRHSFATHLLENGADLRAIQQMLGHESITTTEIYT 305


>gi|225852471|ref|YP_002732704.1| phage-related integrase [Brucella melitensis ATCC 23457]
 gi|256264035|ref|ZP_05466567.1| phage integrase [Brucella melitensis bv. 2 str. 63/9]
 gi|225640836|gb|ACO00750.1| phage-related integrase [Brucella melitensis ATCC 23457]
 gi|263094221|gb|EEZ18098.1| phage integrase [Brucella melitensis bv. 2 str. 63/9]
 gi|326408987|gb|ADZ66052.1| phage-related integrase [Brucella melitensis M28]
          Length = 341

 Score = 43.5 bits (101), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 57/266 (21%), Positives = 102/266 (38%), Gaps = 15/266 (5%)

Query: 62  NSPRKKPTTLKW--LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-----FDYRKI 114
           N  R  P   K+  +I+ Y+ S  +  LA +++ ++  + D+I +K GD     FD  + 
Sbjct: 46  NDSRVIPDASKFRAVITAYKSSHDYQKLADSTKRNWNGWLDRIGKKFGDLSIAQFDLPQK 105

Query: 115 TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRP 173
               IR         P +A   +  +  +  +AV     ++ NPC  +++  +       
Sbjct: 106 IRPVIRKWRGEFADKPRTADYGMQVLSRVLSYAVDPLGKISQNPCEGIKQLYKNDRAAII 165

Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233
           WT +D+ + K+  S   +   A +   ++GLR  D  R    H+ +N   + T K+    
Sbjct: 166 WTDQDIARLKTKCS--PEVAWAVDLAAHTGLRAGDLLRLSWSHITDNAIILPTGKSRHTK 223

Query: 234 TVELP--DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF---KAKATKAGVNKSAHG 288
              +P       LL   P        N  K       F   F   + +A     +   H 
Sbjct: 224 EAVIPLYAELRALLQTIPRRSPIVLTNTRKAPWTVNGFGSSFSDCREEAKLGDRDLHFHD 283

Query: 289 VRKFSATISADAGATAHELMATYGWK 314
            R  +AT    AG +   +    GW+
Sbjct: 284 FRGTAATKFYIAGLSERVIAEIMGWE 309


>gi|17987295|ref|NP_539929.1| integrase/recombinase [Brucella melitensis bv. 1 str. 16M]
 gi|17982974|gb|AAL52193.1| integrase/recombinase [Brucella melitensis bv. 1 str. 16M]
          Length = 336

 Score = 43.5 bits (101), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 60/268 (22%), Positives = 104/268 (38%), Gaps = 19/268 (7%)

Query: 62  NSPRKKPTTLKW--LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-----FDY-RK 113
           N  R  P   K+  +I+ Y+ S  +  LA +++ ++  + D+I +K GD     FD  +K
Sbjct: 41  NDSRVIPDASKFRAVITAYKSSHDYQKLADSTKRNWNGWLDRIGKKFGDLSITQFDLPQK 100

Query: 114 I--TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
           I    +  R     +  T    +Q L+  RVL         ++ NPC  +++  +     
Sbjct: 101 IRPVIRKWRGEFADKPRTADYGMQVLS--RVLSYAVDPLGKISQNPCEGIKQLYKNDRAA 158

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
             WT +D+ + K+  S   +   A +   ++GLR  D  R    H+ +N   + T K+  
Sbjct: 159 IIWTDQDIARLKTKCS--PEVAWAVDLAAHTGLRAGDLLRLSWSHITDNAIILPTGKSRH 216

Query: 232 IITVELP--DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF---KAKATKAGVNKSA 286
                +P       LL   P        N  K       F   F   + +A     +   
Sbjct: 217 TKEAVIPLYAELRALLQTIPRRSPIVLTNTRKAPWTVNGFGSSFSDCREEAKLGDRDLYF 276

Query: 287 HGVRKFSATISADAGATAHELMATYGWK 314
           H  R  +AT    AG +   +    GW+
Sbjct: 277 HDFRGTAATKFYIAGLSERVIAEIMGWE 304


>gi|117624154|ref|YP_853067.1| putative phage integrase [Escherichia coli APEC O1]
 gi|115513278|gb|ABJ01353.1| putative phage integrase [Escherichia coli APEC O1]
          Length = 341

 Score = 43.5 bits (101), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 45/197 (22%), Positives = 79/197 (40%), Gaps = 6/197 (3%)

Query: 36  PYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISF 95
           P   ES  + A    L     K E   + R +  T   L  ++  SA++  L+  ++  +
Sbjct: 28  PTSRESVTLTAIKDGLAALWKKYEETVNNRDRAMTFGRLWEKFLASAYYSDLSPRTQKDY 87

Query: 96  ESYFDQIIRKSGDFDYRKITTKHIRSGVESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVA 154
             +  +++   G      I  +HIR  ++ R + + + A    +SM  ++ W   + YV 
Sbjct: 88  LQHQKKLLAVFGKVPADSIKPEHIRRYMDKRGEQSKTQANHEKSSMSRVYSWGYERGYVK 147

Query: 155 INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR-LAFEFLLYSGLRCSDSCRAG 213
            NPC  V + K K        KE    +++  S    P  +A E       R SD     
Sbjct: 148 ANPCAGVSKFKAKNRERYVTDKE----YQAVLSVAPLPVFIAMEIAYLCAARVSDVLSLK 203

Query: 214 VQHLQNNIFSIKTQKTG 230
            + + N+   I+  KTG
Sbjct: 204 WEQIGNDGIFIQQGKTG 220


>gi|170682438|ref|YP_001743215.1| phage integrase family site specific recombinase [Escherichia coli
           SMS-3-5]
 gi|331652781|ref|ZP_08353787.1| putative integrase for prophage [Escherichia coli M718]
 gi|331683632|ref|ZP_08384228.1| putative integrase for prophage [Escherichia coli H299]
 gi|170520156|gb|ACB18334.1| site-specific recombinase, phage integrase family [Escherichia coli
           SMS-3-5]
 gi|284921955|emb|CBG35031.1| phage integrase [Escherichia coli 042]
 gi|331049537|gb|EGI21608.1| putative integrase for prophage [Escherichia coli M718]
 gi|331078584|gb|EGI49786.1| putative integrase for prophage [Escherichia coli H299]
          Length = 341

 Score = 43.5 bits (101), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 45/197 (22%), Positives = 79/197 (40%), Gaps = 6/197 (3%)

Query: 36  PYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISF 95
           P   ES  + A    L     K E   + R +  T   L  ++  SA++  L+  ++  +
Sbjct: 28  PTSRESVTLTAIKDGLAALWKKYEETVNNRDRAMTFGRLWEKFLASAYYSDLSPRTQKDY 87

Query: 96  ESYFDQIIRKSGDFDYRKITTKHIRSGVESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVA 154
             +  +++   G      I  +HIR  ++ R + + + A    +SM  ++ W   + YV 
Sbjct: 88  LQHQKKLLAVFGKVPADSIKPEHIRRYMDKRGEQSKTQANHEKSSMSRVYSWGYERGYVK 147

Query: 155 INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR-LAFEFLLYSGLRCSDSCRAG 213
            NPC  V + K K        KE    +++  S    P  +A E       R SD     
Sbjct: 148 ANPCAGVSKFKAKNRERYVTDKE----YQAVLSVAPLPVFIAMEIAYLCAARVSDVLSLK 203

Query: 214 VQHLQNNIFSIKTQKTG 230
            + + N+   I+  KTG
Sbjct: 204 WEQIGNDGIFIQQGKTG 220


>gi|110805962|ref|YP_689482.1| putative integrase for prophage CP-933U [Shigella flexneri 5 str.
           8401]
 gi|110615510|gb|ABF04177.1| putative integrase for prophage [Shigella flexneri 5 str. 8401]
          Length = 345

 Score = 43.1 bits (100), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 45/197 (22%), Positives = 79/197 (40%), Gaps = 6/197 (3%)

Query: 36  PYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISF 95
           P   ES  + A    L     K E   + R +  T   L  ++  SA++  L+  ++  +
Sbjct: 28  PTSRESVTLTAIKDGLAALWKKYEETVNNRDRAMTFGRLWEKFLASAYYSDLSPRTQKDY 87

Query: 96  ESYFDQIIRKSGDFDYRKITTKHIRSGVESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVA 154
             +  +++   G      I  +HIR  ++ R + + + A    +SM  ++ W   + YV 
Sbjct: 88  LQHQKKLLAVFGKVPADSIKPEHIRRYMDKRGEQSKTQANHEKSSMSRVYSWGYERGYVK 147

Query: 155 INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR-LAFEFLLYSGLRCSDSCRAG 213
            NPC  V + K K        KE    +++  S    P  +A E       R SD     
Sbjct: 148 ANPCAGVSKFKAKNRERYVTDKE----YQAVLSVAPLPVFIAMEIAYLCAARVSDVLSLK 203

Query: 214 VQHLQNNIFSIKTQKTG 230
            + + N+   I+  KTG
Sbjct: 204 WEQIGNDGIFIQQGKTG 220


>gi|320180132|gb|EFW55072.1| Putative integrase [Shigella boydii ATCC 9905]
          Length = 345

 Score = 43.1 bits (100), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 45/197 (22%), Positives = 79/197 (40%), Gaps = 6/197 (3%)

Query: 36  PYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISF 95
           P   ES  + A    L     K E   + R +  T   L  ++  SA++  L+  ++  +
Sbjct: 28  PTSRESVTLTAIKDGLAALWKKYEETVNNRDRAMTFGRLWEKFLASAYYSDLSPRTQKDY 87

Query: 96  ESYFDQIIRKSGDFDYRKITTKHIRSGVESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVA 154
             +  +++   G      I  +HIR  ++ R + + + A    +SM  ++ W   + YV 
Sbjct: 88  LQHQKKLLAVFGKVPADSIKPEHIRRYMDKRGEQSKTQANHEKSSMSRVYSWGYERGYVK 147

Query: 155 INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR-LAFEFLLYSGLRCSDSCRAG 213
            NPC  V + K K        KE    +++  S    P  +A E       R SD     
Sbjct: 148 ANPCAGVSKFKAKNRERYVTDKE----YQAVLSVAPLPVFIAMEIAYLCAARVSDVLSLK 203

Query: 214 VQHLQNNIFSIKTQKTG 230
            + + N+   I+  KTG
Sbjct: 204 WEQIGNDGIFIQQGKTG 220


>gi|237729900|ref|ZP_04560381.1| phage integrase [Citrobacter sp. 30_2]
 gi|226908506|gb|EEH94424.1| phage integrase [Citrobacter sp. 30_2]
          Length = 398

 Score = 43.1 bits (100), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 65/282 (23%), Positives = 114/282 (40%), Gaps = 15/282 (5%)

Query: 52  TGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFD 110
           TG+ P+ E  +  R  PT L+   S+Y     W  L   S    E  F D I    G+  
Sbjct: 91  TGTDPRYER-DKCRAIPT-LQEAFSQYYFP--WAKLHKKSWNKDEQRFRDHIAPVMGNLL 146

Query: 111 YRKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168
             +IT +H+     S   T  P++  + +  ++ L +W++R E VA NP  +    +   
Sbjct: 147 LNEITPRHVTHLQSSLCETCQPATNNRVIALLKALLRWSLRHEMVATNPAANTPLLRENN 206

Query: 169 EGIRPWTKEDMQQ-FKSFWSEGSQPRLAFEFLLYSGLRCSDSCR-AGVQH--LQNNIFSI 224
              R +++ ++++ F++   + S+    +  LL       D  R A   H  LQ     +
Sbjct: 207 ARQRYFSETEIRRIFEAASEDNSRVASIYIRLLLLTGLRRDELRLAKWAHYSLQQGTLWL 266

Query: 225 KTQKTGTIITVELPDGFMKLLAMTP-IGKETFFINNDKQKMNATQFSIWFKAKATKAGV- 282
              K GT   V L D  +KL+A  P  G   +              +  F+    +AG+ 
Sbjct: 267 PETKNGTGRLVHLNDWAIKLIAELPRFGGNIWMFGGKIPGKPVCNVTKAFRRIIRRAGIY 326

Query: 283 --NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
                 H  R   A +    G T +++ A  G +++  ++ Y
Sbjct: 327 DDEVCIHTCRHSVAALIVSRGGTLYDVQAQLGHRSIQSSQRY 368


>gi|323475083|gb|ADX85689.1| XerC/D integrase-recombinase protein [Sulfolobus islandicus REY15A]
 gi|323477815|gb|ADX83053.1| XerC/D integrase-recombinase protein [Sulfolobus islandicus
           HVE10/4]
          Length = 291

 Score = 43.1 bits (100), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 45/205 (21%), Positives = 86/205 (41%), Gaps = 18/205 (8%)

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           VE R+    +   ++ ++R   KW      V++ P +    PK + + ++   +  +Q+ 
Sbjct: 77  VEKRRAKSVTIRYYIIAVRRFLKWL----NVSVKPPI----PKVRRKEVKALDESQIQKV 128

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH--LQNNIFSIKTQKTGTIITVELPDG 240
            +     ++ +L    LL +GLR ++     V+   L+NN+  ++  K G    V   D 
Sbjct: 129 LNMCKR-TKDKLIIRLLLDTGLRANELLSVLVKDVDLENNMIRVRNTKNGEERVVFFTDE 187

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSAHGVRKFSATISA 298
             +LL     GK+      D++  + T  +++ K K    K  +    H +R   AT+S 
Sbjct: 188 TKQLLRKYMKGKKL-----DEKLFDITYDALYRKLKRLGNKVEIELRPHILRHTFATLSL 242

Query: 299 DAGATAHELMATYGWKTVDQAETYT 323
             G     L    G K +   + YT
Sbjct: 243 KRGINVITLQKLLGHKDIKTTQIYT 267


>gi|66044755|ref|YP_234596.1| Phage integrase:Phage integrase, N-terminal SAM-like [Pseudomonas
           syringae pv. syringae B728a]
 gi|63255462|gb|AAY36558.1| Phage integrase:Phage integrase, N-terminal SAM-like [Pseudomonas
           syringae pv. syringae B728a]
          Length = 319

 Score = 43.1 bits (100), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 56/233 (24%), Positives = 92/233 (39%), Gaps = 33/233 (14%)

Query: 99  FDQIIRKSGDFDYRKITTKHI---RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI 155
           F   +  +G  ++R +T  H+   R+ +E R    ++  + L ++  LF   +    VA 
Sbjct: 52  FCSFVGLAGAEEFRAVTRAHVLAWRARLEKRGLAGATIRRKLAALASLFDHLLENNAVAG 111

Query: 156 -NPCLSVERPK-RKTEGIRPWTKEDMQQFKSFWS-------EGSQPRLAFEFLLYSGLRC 206
            NP   V+RP+    EG  P   +   Q K+          +G + R     LLY GLR 
Sbjct: 112 GNPVHGVKRPRIESNEGKTPALAD--HQAKALLDAPPADSLKGLRDRAVLAVLLYHGLRR 169

Query: 207 SDSCRAGVQHLQN--NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ-K 263
            +  +     LQ    I  ++    G         G ++ L + P+  E  +   +K  +
Sbjct: 170 EEGAQLKTSDLQERRGIKHLRVNGKG---------GKLRWLPLHPVAAERIYAYMEKDLE 220

Query: 264 MNATQFSIWFKAKATKAGVNKSAHGVRK------FSATISADAGATAHELMAT 310
             A   S++   +   +G   SA G+ K       SA I  D G   H L AT
Sbjct: 221 RGAGNGSLFRSLRGRASGTGLSADGIYKIVCHWAMSAGIKVD-GLGVHGLRAT 272


>gi|194435415|ref|ZP_03067602.1| site-specific recombinase, phage integrase family [Shigella
           dysenteriae 1012]
 gi|194416345|gb|EDX32527.1| site-specific recombinase, phage integrase family [Shigella
           dysenteriae 1012]
          Length = 341

 Score = 43.1 bits (100), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 45/197 (22%), Positives = 79/197 (40%), Gaps = 6/197 (3%)

Query: 36  PYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISF 95
           P   ES  + A    L     K E   + R +  T   L  ++  SA++  L+  ++  +
Sbjct: 28  PTSRESVTLTAIKDGLAALWKKYEETVNNRDRAMTFGRLWEKFLASAYYSDLSPRTQKDY 87

Query: 96  ESYFDQIIRKSGDFDYRKITTKHIRSGVESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVA 154
             +  +++   G      I  +HIR  ++ R + + + A    +SM  ++ W   + YV 
Sbjct: 88  LQHQKKLLAVFGKVPADSIKPEHIRRYMDKRGEQSKTQANHEKSSMSRVYSWGYERGYVK 147

Query: 155 INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR-LAFEFLLYSGLRCSDSCRAG 213
            NPC  V + K K        KE    +++  S    P  +A E       R SD     
Sbjct: 148 ANPCAGVSKFKAKNRERYVTDKE----YQAVLSVAPLPVFIAMEIAYLCAARVSDVLSLK 203

Query: 214 VQHLQNNIFSIKTQKTG 230
            + + N+   I+  KTG
Sbjct: 204 WEQIGNDGIFIQQGKTG 220


>gi|166032543|ref|ZP_02235372.1| hypothetical protein DORFOR_02258 [Dorea formicigenerans ATCC
           27755]
 gi|166026900|gb|EDR45657.1| hypothetical protein DORFOR_02258 [Dorea formicigenerans ATCC
           27755]
          Length = 400

 Score = 43.1 bits (100), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 8/97 (8%)

Query: 97  SYFDQIIRKS-GDFDYRKITTKHIRSGVESR-----KHTPSSAIQFLTSMRVLFKWAVRQ 150
           SY++  ++ S G    + I T H++  +         H   S I+F+ S   +F  AV  
Sbjct: 94  SYYNSRVKNSIGKMYLQDIKTYHVQKFLNDLIDSGLAHGTVSNIRFMLSD--MFDKAVLS 151

Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           EY+  NPC+ VE PK   +  R  T+E+ ++F +F S
Sbjct: 152 EYIRKNPCIGVEMPKEVKKERRVLTREEQEKFFTFAS 188


>gi|282878705|ref|ZP_06287473.1| phage integrase domain protein [Prevotella buccalis ATCC 35310]
 gi|281299096|gb|EFA91497.1| phage integrase domain protein [Prevotella buccalis ATCC 35310]
          Length = 292

 Score = 43.1 bits (100), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 57/253 (22%), Positives = 106/253 (41%), Gaps = 30/253 (11%)

Query: 94  SFESYF----DQIIRKSGDFDYRKITTKHIRSGVES---RKHTPSSAIQFLTSMRVLFKW 146
           +FE YF    DQI  +S D D        IR  +E    R ++ +S  + L+++R L+++
Sbjct: 29  AFERYFQGLGDQITWESVDSDI-------IRGWMEDMMDRGNSATSICRRLSALRSLYRY 81

Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF--KSFWSEGSQPRLAFEFLL---Y 201
           ++ +  V +NP L +ERPK      +   + +M +    S W    Q  LA   ++    
Sbjct: 82  SLSRGLVQVNPTLRIERPKMGKPLPQFLKESEMDELLDASTWDTSYQDALARTIIITFYE 141

Query: 202 SGLRCS-----DSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM--TPIGKET 254
           +G+R +     D       + Q  +   + ++       EL     + L      I +++
Sbjct: 142 TGMRLAELIGLDDVSVDFVNRQFKVLGKRNKQRLVPFGDELYQVLQEYLNQRNEQIVRKS 201

Query: 255 --FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMAT 310
             FF++ +  +MN  Q     K   +     K  + H +R   AT   + GA    +   
Sbjct: 202 KAFFLSRNGVRMNHNQVRYLVKKNLSLVSTLKKRTPHVLRHTFATTMLNNGAGLENVQKL 261

Query: 311 YGWKTVDQAETYT 323
            G ++++  E YT
Sbjct: 262 LGHESLETTEIYT 274


>gi|325971096|ref|YP_004247287.1| tyrosine recombinase xerC [Spirochaeta sp. Buddy]
 gi|324026334|gb|ADY13093.1| Tyrosine recombinase xerC [Spirochaeta sp. Buddy]
          Length = 300

 Score = 43.1 bits (100), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 50/233 (21%), Positives = 90/233 (38%), Gaps = 20/233 (8%)

Query: 110 DYRKITTKHIRS----GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165
           DY  IT   I +     V++R  +  S  + L+++R  F +    +    NP L ++R +
Sbjct: 45  DYETITASLIEAYIVIQVQTRHLSERSVAKLLSALRSFFSFLQMSKIREDNPVLLIQRGR 104

Query: 166 RKTE--GIRPWTKED--MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221
           +K     +    + D  ++   +    G + R  FE +   GLR S++C   V   Q   
Sbjct: 105 QKQSLPQVASVAQVDALLESIDTSDLLGFRDRTLFELIYSCGLRISEACTLQVSDYQKTS 164

Query: 222 FSI--KTQKTGTIITVELP----DGFM-----KLLAMTPIGKETFFINNDKQKMNATQFS 270
             +  K  K   I   E+     D ++     KL+ M  +  +  F+     ++      
Sbjct: 165 IRVVGKRHKIRIIPVGEIARMWVDAYLKDIRPKLIGM-RLSTKALFVGRRGHQLTRQAMY 223

Query: 271 IWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
             F A    AG++   H +R   AT   + GA    +    G   +   + YT
Sbjct: 224 KRFIAYCDVAGLDAKVHTLRHSFATHLLEGGADLRSVQELLGHSDIKTTQIYT 276


>gi|257784507|ref|YP_003179724.1| integrase family protein [Atopobium parvulum DSM 20469]
 gi|257473014|gb|ACV51133.1| integrase family protein [Atopobium parvulum DSM 20469]
          Length = 305

 Score = 43.1 bits (100), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 57/252 (22%), Positives = 99/252 (39%), Gaps = 25/252 (9%)

Query: 108 DFDYRKITTKHIRSGVESRKHTPSSAIQF---LTSMRVLFKWAVRQEYVAINPCLSVERP 164
           + D  ++  K++R  +   K    SA      L+++R  +KW  R++ +A +P L++  P
Sbjct: 47  NVDLTQVDHKNLRLYLAYLKQAQYSAKTLNRHLSALRGFYKWMQREKLIATDPALALSNP 106

Query: 165 KRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLAFEFLLYSGLRCSD--SCRAGVQHLQ 218
           +         T  D+ +         + G + R   EFL  +G R S+  + R     LQ
Sbjct: 107 RAPRNLPHTMTDSDVNRLLESCDVSTAAGLRDRAFLEFLYATGARISEVATLRLEQVDLQ 166

Query: 219 NNIFSI--KTQKTGTIITVELPDGFMK---------LLAMTPIGK--ETFFINNDKQKMN 265
           N    +  K  K   +   E    ++K         LL     G+     FI+     M+
Sbjct: 167 NGTVRLFGKGSKERIVPLYESAIEWLKKYLRSSRPTLLLKDKTGRVHSALFISVRGNNMS 226

Query: 266 ATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           A      F +  T AG++ S   H +R   AT     GA    +    G +++   + YT
Sbjct: 227 ADSLRKVFSSYLTAAGLDSSLSPHAMRHTYATELLGGGADLRIVQELLGHESLSTTQVYT 286

Query: 324 K-GADRIRLGIK 334
               DR++   K
Sbjct: 287 HLSVDRLKEAAK 298


>gi|325954362|ref|YP_004238022.1| Tyrosine recombinase xerC [Weeksella virosa DSM 16922]
 gi|323436980|gb|ADX67444.1| Tyrosine recombinase xerC [Weeksella virosa DSM 16922]
          Length = 301

 Score = 43.1 bits (100), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 63/280 (22%), Positives = 114/280 (40%), Gaps = 31/280 (11%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES---RK 127
           L +L  E R S H           F S++   I +S D    K    HIRS + S   + 
Sbjct: 8   LDYLQYEKRYSLHTIKNYRRDLDDFLSFYQ--IEESSD-SIEKAEKNHIRSFIISLSDKN 64

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            +  S  + L+S+R  + + ++   +  +P L ++  K K E I P+T+++MQ+     +
Sbjct: 65  ISERSINRKLSSLRTFYIYLIKTGQLTTSPMLQIKSLKTKKEVIIPYTEKEMQRLFELEN 124

Query: 188 ------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHL---QNNIFSIKTQKTGTIITV--E 236
                 +G + RL       +G+R  +  +  +  L   Q  I  +  +    ++ +   
Sbjct: 125 IFPDDFDGIRDRLMMNLFYQTGIRRGELIQLTLPQLRIEQKEIKVLGKRNKERVLPIGEN 184

Query: 237 LPDGFMKLLAM--TPIGKE--TFFINNDKQKM------NATQFSIWFKAKATKAGVNKSA 286
           L   F + L +    +G E  T FI N+ Q +          + + F  +  K    KS 
Sbjct: 185 LVSEFTRYLKVRKEVVGSENLTLFIKNNGQALYEKFVYERVNYYLSFITEKHK----KSP 240

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           H +R   AT   + GA  + L    G  ++   + YT  +
Sbjct: 241 HVLRHTFATQLLENGADLNALKEILGHSSLSSTQIYTHSS 280


>gi|281601440|gb|ADA74424.1| putative phage integrase [Shigella flexneri 2002017]
 gi|313649784|gb|EFS14207.1| phage integrase family protein [Shigella flexneri 2a str. 2457T]
 gi|315618062|gb|EFU98654.1| phage integrase family protein [Escherichia coli 3431]
 gi|320193246|gb|EFW67884.1| Putative integrase [Escherichia coli WV_060327]
 gi|332091590|gb|EGI96671.1| phage integrase family protein [Shigella dysenteriae 155-74]
          Length = 341

 Score = 43.1 bits (100), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 45/197 (22%), Positives = 79/197 (40%), Gaps = 6/197 (3%)

Query: 36  PYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISF 95
           P   ES  + A    L     K E   + R +  T   L  ++  SA++  L+  ++  +
Sbjct: 28  PTSRESVTLTAIKDGLAALWKKYEETVNNRDRAMTFGRLWEKFLASAYYSDLSPRTQKDY 87

Query: 96  ESYFDQIIRKSGDFDYRKITTKHIRSGVESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVA 154
             +  +++   G      I  +HIR  ++ R + + + A    +SM  ++ W   + YV 
Sbjct: 88  LQHQKKLLAVFGKVPADSIKPEHIRRYMDKRGEQSKTQANHEKSSMSRVYSWGYERGYVK 147

Query: 155 INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR-LAFEFLLYSGLRCSDSCRAG 213
            NPC  V + K K        KE    +++  S    P  +A E       R SD     
Sbjct: 148 ANPCAGVSKFKAKNRERYVTDKE----YQAVLSVAPLPVFIAMEIAYLCAARVSDVLSLK 203

Query: 214 VQHLQNNIFSIKTQKTG 230
            + + N+   I+  KTG
Sbjct: 204 WEQIGNDGIFIQQGKTG 220


>gi|261317605|ref|ZP_05956802.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
 gi|265988639|ref|ZP_06101196.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1]
 gi|261296828|gb|EEY00325.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
 gi|264660836|gb|EEZ31097.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1]
          Length = 304

 Score = 43.1 bits (100), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 60/268 (22%), Positives = 104/268 (38%), Gaps = 19/268 (7%)

Query: 62  NSPRKKPTTLKW--LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-----FDY-RK 113
           N  R  P   K+  +I+ Y+ S  +  LA +++ ++  + D+I +K GD     FD  +K
Sbjct: 9   NDSRVIPDASKFRAVITAYKSSHDYQKLADSTKRNWNGWLDRIGKKFGDLSIAQFDLPQK 68

Query: 114 I--TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
           I    +  R     +  T    +Q L+  RVL         ++ NPC  +++  +     
Sbjct: 69  IRPVIRKWRGEFADKPRTADYGMQVLS--RVLSYAVDPLGKISQNPCEGIKQLYKNDRAA 126

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
             WT +D+ + K+  S   +   A +   ++GLR  D  R    H+ +N   + T K+  
Sbjct: 127 IIWTDQDIARLKTKCS--PEVAWAVDLAAHTGLRAGDLLRLSWSHITDNAIILPTGKSRH 184

Query: 232 IITVELP--DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF---KAKATKAGVNKSA 286
                +P       LL   P        N  K       F   F   + +A     +   
Sbjct: 185 TKEAVIPLYAELRALLQTIPRRSPIVLTNTRKAPWTVNGFGSSFSDCREEAKLGDRDLHF 244

Query: 287 HGVRKFSATISADAGATAHELMATYGWK 314
           H  R  +AT    AG +   +    GW+
Sbjct: 245 HDFRGTAATKFYIAGLSERVIAEIMGWE 272


>gi|294852313|ref|ZP_06792986.1| hypothetical protein BAZG_01235 [Brucella sp. NVSL 07-0026]
 gi|294820902|gb|EFG37901.1| hypothetical protein BAZG_01235 [Brucella sp. NVSL 07-0026]
          Length = 341

 Score = 43.1 bits (100), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 54/254 (21%), Positives = 97/254 (38%), Gaps = 17/254 (6%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-----FDY-RKI--TTKHIRSGVES 125
           +I+ Y+ S  +  LA +++ ++  + D+I +K GD     FD  +KI    +  R     
Sbjct: 60  VITAYKSSHDYQKLADSTKRNWNGWLDRIGKKFGDLSIAQFDLPQKIRPVIRKWRGEFAD 119

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +  T    +Q L+  RVL         ++ NPC  +++  +       WT +D+ + K+ 
Sbjct: 120 KPRTADYGMQVLS--RVLSYAVDPLGKISQNPCEGIKQLYKNDRAAIIWTDQDIARLKTK 177

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP--DGFMK 243
            S   +   A +   ++GLR  D  R    H+ +N   + T K+       +P       
Sbjct: 178 CS--PEVAWAVDLAAHTGLRAGDLLRLSWSHITDNAIILPTGKSRHTKEAVIPLYAELRA 235

Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISAD---A 300
           LL   P        N  K       F   F     +A +         F  T++     A
Sbjct: 236 LLQTIPRRSPIVLTNTRKAPWTVNGFGSSFSDCREEAKLGDRDLHFHDFRGTVATKFYIA 295

Query: 301 GATAHELMATYGWK 314
           G +   +    GW+
Sbjct: 296 GLSERVIAEIMGWE 309


>gi|269120433|ref|YP_003308610.1| integrase family protein [Sebaldella termitidis ATCC 33386]
 gi|268614311|gb|ACZ08679.1| integrase family protein [Sebaldella termitidis ATCC 33386]
          Length = 307

 Score = 43.1 bits (100), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 7/118 (5%)

Query: 98  YFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS---SAIQFLTSMRVLFKWAVRQEYVA 154
           + D I      FDY K+    +RS +    +      S  + ++++R  F +   Q  V 
Sbjct: 42  FIDYISGNEEIFDYNKVEVFTVRSFIAYSNNNEVGKRSINRKISALRTFFAYLKEQNIVE 101

Query: 155 INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLAFEFLLYSGLRCSD 208
            N  + V  PK + E     TK+D+ + ++        G + RL  EFL  SGLR S+
Sbjct: 102 ANKLIYVNMPKFEKELPTVLTKDDINKLRNVIDISKVTGIRDRLIIEFLYSSGLRSSE 159


>gi|256113508|ref|ZP_05454342.1| phage-related integrase [Brucella melitensis bv. 3 str. Ether]
 gi|265994891|ref|ZP_06107448.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|262766004|gb|EEZ11793.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
           Ether]
          Length = 341

 Score = 43.1 bits (100), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 43/178 (24%), Positives = 79/178 (44%), Gaps = 14/178 (7%)

Query: 62  NSPRKKPTTLKW--LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-----FDY-RK 113
           N  R  P   K+  +I+ Y+ S  +  LA +++ ++  + D+I +K GD     FD  +K
Sbjct: 46  NDSRVIPDASKFRAVITAYKSSHDYQKLADSTKRNWNGWLDRIGKKFGDLSIAQFDLPQK 105

Query: 114 I--TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
           I    +  R     +  T    +Q L+  RVL         ++ NPC  +++  +     
Sbjct: 106 IRPVIRKWRGEFADKPRTADYGMQVLS--RVLSYAVDPLGKISQNPCEGIKQLYKNDRAA 163

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229
             WT +D+ + K+  S   +   A +   ++GLR  D  R    H+ +N   + T K+
Sbjct: 164 IIWTDQDIARLKTKCS--PEVAWAVDLAAHTGLRAGDLLRLSWSHITDNAIILPTGKS 219


>gi|256393898|ref|YP_003115462.1| integrase family protein [Catenulispora acidiphila DSM 44928]
 gi|256360124|gb|ACU73621.1| integrase family protein [Catenulispora acidiphila DSM 44928]
          Length = 354

 Score = 43.1 bits (100), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 45/226 (19%), Positives = 85/226 (37%), Gaps = 37/226 (16%)

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINP------CLSVERPKRKTEGIRPWTKEDMQQFK 183
           P++  + ++++R  + +AV   Y + +P       L + R  RK++ + P  +E     +
Sbjct: 117 PATLARKISAVRNFYAYAVDSGYTSSSPVPIKDKALHLPRVSRKSQTLGPDREESAAMLE 176

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
           +    G +       LLY GLR S+ C  G+     N+  + +Q+   ++ +    G  +
Sbjct: 177 AAAQRGVRDEAVVAVLLYQGLRVSELC--GI-----NVEDLSSQRGHRVVRLRRKGGEEQ 229

Query: 244 LLAMTPIGKETF----------------------FINNDKQKMNATQFSIWFKAKATKAG 281
             A+ P                            F+  +  ++   Q     ++ A  AG
Sbjct: 230 DQAIAPPAAGCLDAWLAERARDSAFGAVPASGPVFVGPEGARLTRYQVEWIVESCARAAG 289

Query: 282 VNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           V K  S H +R    T+  DAG    ++    G       E Y  G
Sbjct: 290 VEKKISPHSLRHACTTMLLDAGVPLRDIQVYMGHANSATTERYDLG 335


>gi|260563980|ref|ZP_05834466.1| phage integrase [Brucella melitensis bv. 1 str. 16M]
 gi|260153996|gb|EEW89088.1| phage integrase [Brucella melitensis bv. 1 str. 16M]
          Length = 341

 Score = 43.1 bits (100), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 60/268 (22%), Positives = 104/268 (38%), Gaps = 19/268 (7%)

Query: 62  NSPRKKPTTLKW--LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-----FDY-RK 113
           N  R  P   K+  +I+ Y+ S  +  LA +++ ++  + D+I +K GD     FD  +K
Sbjct: 46  NDSRVIPDASKFRAVITAYKSSHDYQKLADSTKRNWNGWLDRIGKKFGDLSITQFDLPQK 105

Query: 114 I--TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
           I    +  R     +  T    +Q L+  RVL         ++ NPC  +++  +     
Sbjct: 106 IRPVIRKWRGEFADKPRTADYGMQVLS--RVLSYAVDPLGKISQNPCEGIKQLYKNDRAA 163

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
             WT +D+ + K+  S   +   A +   ++GLR  D  R    H+ +N   + T K+  
Sbjct: 164 IIWTDQDIARLKTKCS--PEVAWAVDLAAHTGLRAGDLLRLSWSHITDNAIILPTGKSRH 221

Query: 232 IITVELP--DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF---KAKATKAGVNKSA 286
                +P       LL   P        N  K       F   F   + +A     +   
Sbjct: 222 TKEAVIPLYAELRALLQTIPRRSPIVLTNTRKAPWTVNGFGSSFSDCREEAKLGDRDLYF 281

Query: 287 HGVRKFSATISADAGATAHELMATYGWK 314
           H  R  +AT    AG +   +    GW+
Sbjct: 282 HDFRGTAATKFYIAGLSERVIAEIMGWE 309


>gi|320161519|ref|YP_004174743.1| putative site-specific recombinase [Anaerolinea thermophila UNI-1]
 gi|319995372|dbj|BAJ64143.1| putative site-specific recombinase [Anaerolinea thermophila UNI-1]
          Length = 300

 Score = 43.1 bits (100), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 53/274 (19%), Positives = 100/274 (36%), Gaps = 22/274 (8%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
           L + I E+ +      L+  + + +E+   +  R+ GDFD   I  K I   + S   + 
Sbjct: 4   LSYCIDEFLEFKRAQRLSRWTLLDYETVLRRFNREIGDFDIDHIERKTIAHYLASLDLSK 63

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF-------- 182
                  T++  L+ WAV   Y  ++    ++ PK +   I P+T++ +           
Sbjct: 64  KRVKNIYTALSSLWTWAVEMGYCTVHIIRQIKPPKPEKRPILPFTRDQIMNMLASTDASK 123

Query: 183 ----------KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI--KTQKTG 230
                     ++    G + R     LL +G+R S+ C   V+ ++ +   I  K  K  
Sbjct: 124 EYTRPGKRACRNRLKTGVRDRAIILLLLDTGIRASELCGIKVKDIKPHGIYIHGKGSKDR 183

Query: 231 TI-ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS-AHG 288
            + I+          +      ++  F       ++     +  +    +AGVN +  H 
Sbjct: 184 LVPISETTRSALCDYIGEQKDIEKYVFKTEQGNVLSRDALRLIIRRIGDRAGVNDAHPHR 243

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETY 322
            R   A      G     L A  G +T+D    Y
Sbjct: 244 FRHTFAINFLRNGGDVFTLQAILGHETLDMVRRY 277


>gi|119715959|ref|YP_922924.1| phage integrase family protein [Nocardioides sp. JS614]
 gi|119536620|gb|ABL81237.1| phage integrase family protein [Nocardioides sp. JS614]
          Length = 378

 Score = 43.1 bits (100), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 52/221 (23%), Positives = 89/221 (40%), Gaps = 26/221 (11%)

Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMRVL---FKWAVRQEYVAINPCLSVERPKRKTEG 170
           + ++ +R   ES+     SA        VL      AV    +A++PC  +  PK   + 
Sbjct: 114 LESRELRPATESQPARTLSAGSVRNIYEVLARVMDAAVEDRVIAVSPCRRIALPKGHDDE 173

Query: 171 IRPWTKEDMQQFKSFWSE----------GSQPRLAFEFLLYSGLRCSD------SCRAGV 214
           +   T +++ + +   +E          GS  R+  E L   GLR SD      S R   
Sbjct: 174 VEVPTLDEIDRVRDALAERWQVLPVVLAGSGLRVG-ELL---GLRLSDVDFLRRSIRVER 229

Query: 215 QHLQ-NNIFSIKTQKTGTIITVE--LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI 271
           Q LQ N I  +K++ +   + V   + D     LA  P  +E  F +   + +   ++  
Sbjct: 230 QRLQTNQIAPLKSKASRRRVPVGQVVIDALAAHLASYPPTEEALFTDEFGKPLTYRRWKR 289

Query: 272 WFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYG 312
                A  AG   ++H  R F+A+     GA+  ++ A  G
Sbjct: 290 LVSDAAKVAGAEITSHSFRHFAASALISGGASVKQVQAFLG 330


>gi|91789051|ref|YP_550003.1| tyrosine recombinase XerD subunit [Polaromonas sp. JS666]
 gi|91698276|gb|ABE45105.1| tyrosine recombinase XerD subunit [Polaromonas sp. JS666]
          Length = 300

 Score = 43.1 bits (100), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 47/217 (21%), Positives = 87/217 (40%), Gaps = 25/217 (11%)

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-- 188
           +SA + LT  +  F+WA+R+  + ++P L ++  K+     +  ++  ++   +  SE  
Sbjct: 73  TSANRRLTVFKRYFRWALRERLITVDPTLKLQSAKQALRVPKVMSEAQVEALLAAPSEST 132

Query: 189 --GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-------------I 233
             G + R   E +  SGLR S+       H+  N   ++    G+              +
Sbjct: 133 PLGQRDRAMLELMYASGLRVSELVGLKTFHVGLNEGVLRVMGKGSKERLVPFGQVAREWV 192

Query: 234 TVELPDGFMKLLAMTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289
            + L +    +L     G++T   F+ N    M+   F +  K  A  AG++   S H +
Sbjct: 193 VLYLAEARPAILG----GQQTDDLFVTNRGSGMSRVMFWMLVKKYAQLAGIHSPLSPHTL 248

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           R   AT   + GA    +    G   +     YT  A
Sbjct: 249 RHAFATHLLNHGADLRAVQMLLGHADISTTTIYTHVA 285


>gi|148256274|ref|YP_001240859.1| putative phage-like integrase [Bradyrhizobium sp. BTAi1]
 gi|146408447|gb|ABQ36953.1| putative phage-like integrase [Bradyrhizobium sp. BTAi1]
          Length = 434

 Score = 43.1 bits (100), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 64/289 (22%), Positives = 109/289 (37%), Gaps = 47/289 (16%)

Query: 43  FIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI 102
           FI    +  TG  P+R +I   R     L W  S+   +   G LA   R      FD  
Sbjct: 130 FIQERTTRKTGEKPRR-WIEEAR----LLGWDFSKDEPAIVKGGLADRFRDKPVLDFD-- 182

Query: 103 IRKSGDFDYRKITT--KHIRSGVESRKHTPSSAI--QFLTSMRVLFKWAVRQEYVAINPC 158
               GD  Y  I    +H   G+  R   PS A       ++  LFKW  R+  + +NP 
Sbjct: 183 ----GDEIYALIAEARRHGVPGMARRSAAPSDARGRHMAAALSALFKWLHRERRIKVNPV 238

Query: 159 LSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGV 214
           L + +P       R  +     + K FW+     GS      + LL +G R ++  R   
Sbjct: 239 LGLSKPPNSPSRRRFLSD---AEIKKFWAACTTLGSPFGPMLKLLLLTGQRLNEIARLHD 295

Query: 215 QHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274
             L +    +   +T   +  ++P        ++ + KE      + Q++  +++     
Sbjct: 296 TELTDEAIRLPGSRTKNALPHDVP--------LSSLAKEVL---AEVQRVPNSKYVFSTN 344

Query: 275 AKATKAGVNKSA--------------HGVRKFSATISADAGATAHELMA 309
            +A  +G +K+               H +R+ +AT  A+ G   H + A
Sbjct: 345 GRAPVSGFSKAKSRIDDLLNIEPWVFHDLRRSAATGMAEIGIQPHVIEA 393


>gi|254714058|ref|ZP_05175869.1| Phage integrase [Brucella ceti M644/93/1]
 gi|254716885|ref|ZP_05178696.1| Phage integrase [Brucella ceti M13/05/1]
          Length = 303

 Score = 43.1 bits (100), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 60/268 (22%), Positives = 104/268 (38%), Gaps = 19/268 (7%)

Query: 62  NSPRKKPTTLKW--LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-----FDY-RK 113
           N  R  P   K+  +I+ Y+ S  +  LA +++ ++  + D+I +K GD     FD  +K
Sbjct: 8   NDSRVIPDASKFRAVITAYKSSHDYQKLADSTKRNWNGWLDRIGKKFGDLSIAQFDLPQK 67

Query: 114 I--TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
           I    +  R     +  T    +Q L+  RVL         ++ NPC  +++  +     
Sbjct: 68  IRPVIRKWRGEFADKPRTADYGMQVLS--RVLSYAVDPLGKISQNPCEGIKQLYKNDRAA 125

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
             WT +D+ + K+  S   +   A +   ++GLR  D  R    H+ +N   + T K+  
Sbjct: 126 IIWTDQDIARLKTKCS--PEVAWAVDLAAHTGLRAGDLLRLSWSHITDNAIILPTGKSRH 183

Query: 232 IITVELP--DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF---KAKATKAGVNKSA 286
                +P       LL   P        N  K       F   F   + +A     +   
Sbjct: 184 TKEAVIPLYAELRALLQTIPRRSPIVLTNTRKAPWTVNGFGSSFSDCREEAKLGDRDLHF 243

Query: 287 HGVRKFSATISADAGATAHELMATYGWK 314
           H  R  +AT    AG +   +    GW+
Sbjct: 244 HDFRGTAATKFYIAGLSERVIAEIMGWE 271


>gi|323340732|ref|ZP_08080984.1| integrase/recombinase XerD [Lactobacillus ruminis ATCC 25644]
 gi|323091855|gb|EFZ34475.1| integrase/recombinase XerD [Lactobacillus ruminis ATCC 25644]
          Length = 300

 Score = 43.1 bits (100), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 51/249 (20%), Positives = 97/249 (38%), Gaps = 54/249 (21%)

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KSFW 186
           +S I+ +TS+R  F+   + E +  +P +S+E PK +       + E+++       +  
Sbjct: 73  ASIIRCVTSLRKFFQSMKQDEKIQDDPMISIETPKGEKHLPEVLSIEEVEMLLNAPDTSQ 132

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
           + G + R   E +  +GLR S+     ++ L  ++  I+T   G            +   
Sbjct: 133 TLGIRNRAILELMYATGLRVSEVVNLKLEDLHLDVGIIQTMGKG------------RKER 180

Query: 247 MTPIGKET-----------------------FFINNDKQKMNATQFSIW--FKAKATKAG 281
           + PIG E                         F+N   +++  T+  IW   K +  KAG
Sbjct: 181 IVPIGDEAIVWINNYLNDARPELCKNKRSPFLFVNFHGERL--TRQGIWKNLKNEVKKAG 238

Query: 282 VNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
           ++K+   H +R   AT   + GA    +    G   +   + YT  +          +R+
Sbjct: 239 ISKNVTPHTLRHSFATHILENGADLRIVQELLGHSDISTTQIYTHIS---------KKRL 289

Query: 340 SSVVDSDDP 348
           S + D   P
Sbjct: 290 SKIYDESHP 298


>gi|326538700|gb|ADZ86915.1| phage-related integrase [Brucella melitensis M5-90]
          Length = 303

 Score = 43.1 bits (100), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 60/268 (22%), Positives = 104/268 (38%), Gaps = 19/268 (7%)

Query: 62  NSPRKKPTTLKW--LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-----FDY-RK 113
           N  R  P   K+  +I+ Y+ S  +  LA +++ ++  + D+I +K GD     FD  +K
Sbjct: 8   NDSRVIPDASKFRAVITAYKSSHDYQKLADSTKRNWNGWLDRIGKKFGDLSIAQFDLPQK 67

Query: 114 I--TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
           I    +  R     +  T    +Q L+  RVL         ++ NPC  +++  +     
Sbjct: 68  IRPVIRKWRGEFADKPRTADYGMQVLS--RVLSYAVDPLGKISQNPCEGIKQLYKNDRAA 125

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
             WT +D+ + K+  S   +   A +   ++GLR  D  R    H+ +N   + T K+  
Sbjct: 126 IIWTDQDIARLKTKCS--PEVAWAVDLAAHTGLRAGDLLRLSWSHITDNAIILPTGKSRH 183

Query: 232 IITVELP--DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF---KAKATKAGVNKSA 286
                +P       LL   P        N  K       F   F   + +A     +   
Sbjct: 184 TKEAVIPLYAELRALLQTIPRRSPIVLTNTRKAPWTVNGFGSSFSDCREEAKLGDRDLHF 243

Query: 287 HGVRKFSATISADAGATAHELMATYGWK 314
           H  R  +AT    AG +   +    GW+
Sbjct: 244 HDFRGTAATKFYIAGLSERVIAEIMGWE 271


>gi|301311823|ref|ZP_07217745.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           20_3]
 gi|300829925|gb|EFK60573.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           20_3]
          Length = 380

 Score = 43.1 bits (100), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 92/219 (42%), Gaps = 31/219 (14%)

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-PWTKED---MQQFKS 184
           TP +A  + T++R     AVR+  +  NP   +E     TE I+ P +K D   +++ K 
Sbjct: 161 TPKTAHSYYTTLRTALNEAVRERLIESNPWYKLE----MTEKIKVPESKRDFLTIEEIKK 216

Query: 185 -----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITV 235
                F++E  Q R A+ F  + GLR SD  +   + +  +    + S+   KT   + +
Sbjct: 217 MIATPFFNE--QVRQAYLFSCFCGLRISDIRKLRWRDISISGGQWLVSVVMTKTTNPVYI 274

Query: 236 ELPDGFMKLL----AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGV 289
            L    +K L      TP G     +       N +   +  K  A KAGV K+   H  
Sbjct: 275 PLSSQAVKWLPERNGCTPDGLVFGGLP------NTSNLCVSLKNWADKAGVKKNVTFHTA 328

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           R   A +    GA  + +    G ++V   + Y K  D+
Sbjct: 329 RHSCAVLLLTLGADIYTVSKILGHRSVRATQVYAKIVDK 367


>gi|269926944|ref|YP_003323567.1| integrase family protein [Thermobaculum terrenum ATCC BAA-798]
 gi|269790604|gb|ACZ42745.1| integrase family protein [Thermobaculum terrenum ATCC BAA-798]
          Length = 310

 Score = 43.1 bits (100), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 43/217 (19%), Positives = 90/217 (41%), Gaps = 16/217 (7%)

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
           G + R + PS+  + + +++  F++ V +  V  NP   +  P+ +    +  + +++  
Sbjct: 66  GNQDRAYAPSTQARKMAAIKSFFQFLVAKSVVDQNPASDLISPRVQKYWPKAISVQEVNM 125

Query: 182 FKSFWS-----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
             +  S     EG + R   E L  +GLR S+     V  +  +   +K    G    V 
Sbjct: 126 LLAAASDSETPEGIRDRAMLEVLYRTGLRVSELVSLNVDDINLDESHLKCIGRGKTRKVP 185

Query: 237 LPDGFMKLLAM-----TPI-----GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-S 285
           L    + +L +      P+      ++  F+N+  Q++    F +  KA A++AG+   +
Sbjct: 186 LSQPAVDVLKLYLERSRPLLVRGQDEQALFVNHRGQRLTRQGFWLILKAYASEAGIKGIT 245

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
            H +R   A    D G    ++    G  ++   + Y
Sbjct: 246 PHTLRHSFAAHMIDGGIDLRQVQEWLGHASITTTQVY 282


>gi|327404137|ref|YP_004344975.1| Tyrosine recombinase xerC [Fluviicola taffensis DSM 16823]
 gi|327319645|gb|AEA44137.1| Tyrosine recombinase xerC [Fluviicola taffensis DSM 16823]
          Length = 293

 Score = 43.1 bits (100), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 57/281 (20%), Positives = 117/281 (41%), Gaps = 30/281 (10%)

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG---DFDYRKITTKHIRS-- 121
           K + + +L  E R S H       + +++E   +Q +  S      ++R++  + +R+  
Sbjct: 4   KDSFIHYLEVEKRYSKH-------TILAYEEDLNQFVSFSELKESVEWREVNYQLVRAWV 56

Query: 122 -GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK--RKTEGIRPWTKED 178
            G+     +  +  + ++ +R  FKW + +  +  NP L +  PK  ++       T+ D
Sbjct: 57  VGLLESGQSNRTVSRKISCLRSFFKWLINEGKIGENPMLRIRGPKVEKRLPQFVKQTEID 116

Query: 179 MQQFKSFWS---EGSQPRLAFEFLLYSGLRCSDSCRA---GVQHLQNNIFSIKTQKTGTI 232
             + +  +S   EG + RL FE    +G+R S+        V  +   +   + ++    
Sbjct: 117 GARIEGLFSSNFEGVRDRLMFELFYQTGIRLSELIELKNKDVSSVSIKVLGKRNKERIIP 176

Query: 233 ITVELPDGFMKLLAMTPIGKET---FFINNDKQKMNATQFSIWFKAKATKAGVN----KS 285
           I  EL +  +   ++ P G ++    F+  D +K+ + +F ++ K       V     KS
Sbjct: 177 IGQELHEIILAYQSIKPGGPDSQILLFVKKDGRKL-SPKF-VYRKINTYLGSVTNVQKKS 234

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            H +R   AT   + GA    L    G   +   + YT  +
Sbjct: 235 PHILRHTFATHMLNNGAGLETLKELLGHANLSATQVYTHNS 275


>gi|256369391|ref|YP_003106899.1| site-specific recombinase, phage integrase family [Brucella microti
           CCM 4915]
 gi|255999551|gb|ACU47950.1| site-specific recombinase, phage integrase family [Brucella microti
           CCM 4915]
          Length = 341

 Score = 43.1 bits (100), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 60/268 (22%), Positives = 104/268 (38%), Gaps = 19/268 (7%)

Query: 62  NSPRKKPTTLKW--LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-----FDY-RK 113
           N  R  P   K+  +I+ Y+ S  +  LA +++ ++  + D+I +K GD     FD  +K
Sbjct: 46  NDSRVIPDASKFRAVITAYKSSHDYQKLADSTKRNWNGWLDRIGKKFGDLSIAQFDLPQK 105

Query: 114 I--TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
           I    +  R     +  T    +Q L+  RVL         ++ NPC  +++  +     
Sbjct: 106 IRPVIRKWRGEFADKPRTADYGMQVLS--RVLSYAVDPLGKISQNPCEGIKQLYKNDRAA 163

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
             WT +D+ + K+  S   +   A +   ++GLR  D  R    H+ +N   + T K+  
Sbjct: 164 IIWTDQDIARLKTKCS--PEVAWAVDVAAHTGLRAGDLLRLSWSHITDNAIILPTGKSRH 221

Query: 232 IITVELP--DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF---KAKATKAGVNKSA 286
                +P       LL   P        N  K       F   F   + +A     +   
Sbjct: 222 TKEAVIPLYAELRALLQTIPRRSPIVLTNTRKAPWTVNGFGSSFSDCREEAKLGDRDLHF 281

Query: 287 HGVRKFSATISADAGATAHELMATYGWK 314
           H  R  +AT    AG +   +    GW+
Sbjct: 282 HDFRGTAATKFYIAGLSERVIAEIMGWE 309


>gi|237722727|ref|ZP_04553208.1| bacteriophage integrase [Bacteroides sp. 2_2_4]
 gi|293373708|ref|ZP_06620055.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|317473968|ref|ZP_07933247.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
 gi|229448537|gb|EEO54328.1| bacteriophage integrase [Bacteroides sp. 2_2_4]
 gi|292631363|gb|EFF49994.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|316909810|gb|EFV31485.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
          Length = 380

 Score = 43.1 bits (100), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 92/219 (42%), Gaps = 31/219 (14%)

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-PWTKED---MQQFKS 184
           TP +A  + T++R     AVR+  +  NP   +E     TE I+ P +K D   +++ K 
Sbjct: 161 TPKTAHSYYTTLRTALNEAVRERLIESNPWYKLE----MTEKIKVPESKRDFLTIEEIKK 216

Query: 185 -----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITV 235
                F++E  Q R A+ F  + GLR SD  +   + +  +    + S+   KT   + +
Sbjct: 217 MIATPFFNE--QVRQAYLFSCFCGLRISDIRKLRWRDISISGGQWLVSVVMTKTTNPVYI 274

Query: 236 ELPDGFMKLL----AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGV 289
            L    +K L      TP G     +       N +   +  K  A KAGV K+   H  
Sbjct: 275 PLSSQAVKWLPERNGCTPDGLVFGGLP------NTSNLCVSLKNWADKAGVKKNVTFHTA 328

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           R   A +    GA  + +    G ++V   + Y K  D+
Sbjct: 329 RHSCAVLLLTLGADIYTVSKILGHRSVRATQVYAKIVDK 367


>gi|294828085|ref|NP_712528.2| integrase/recombinase XerD [Leptospira interrogans serovar Lai str.
           56601]
 gi|302393797|sp|Q7ZAM8|XERC_LEPIN RecName: Full=Tyrosine recombinase xerC
 gi|302393800|sp|Q72RY9|XERC_LEPIC RecName: Full=Tyrosine recombinase xerC
 gi|293385933|gb|AAN49546.2| integrase/recombinase XerD [Leptospira interrogans serovar Lai str.
           56601]
          Length = 311

 Score = 43.1 bits (100), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 45/202 (22%), Positives = 75/202 (37%), Gaps = 16/202 (7%)

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS------ 190
           L+S+R  +K  +R++ V  NP   +  PK + E  + +   + ++   F SE +      
Sbjct: 89  LSSLRTFYKVLLREDLVKSNPATQLSFPKVRKEVPKNFRINETEEILEFESENASEVSEI 148

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-----TIITVELPDGFMKLL 245
           + R   E L  SGLR  +   A +  L  ++  +K    G          E      K L
Sbjct: 149 RDRAMIEVLYSSGLRVFELVNAKLNSLSKDLTVLKVLGKGRKERFVYFGKEAVSSLQKYL 208

Query: 246 AMTPIG---KETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADA 300
               +     E  F+N   +K+           +  K G  K+   H  R   AT   DA
Sbjct: 209 EYRNVSFPDAEEIFLNQRGKKLTTRGVRYILNERRKKMGWEKTITPHKFRHTFATDLLDA 268

Query: 301 GATAHELMATYGWKTVDQAETY 322
           GA    +    G  ++   + Y
Sbjct: 269 GAEIRAVQELLGHSSLSTTQIY 290


>gi|150397133|ref|YP_001327600.1| hypothetical protein Smed_1931 [Sinorhizobium medicae WSM419]
 gi|150028648|gb|ABR60765.1| hypothetical protein Smed_1931 [Sinorhizobium medicae WSM419]
          Length = 388

 Score = 43.1 bits (100), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 57/268 (21%), Positives = 91/268 (33%), Gaps = 45/268 (16%)

Query: 3   PSLRLPPFVTKERTRHGKIIYYFRKGHGRRI----RLPYPHESTFIPAYMSALTGSTPKR 58
           PS+ LP  + KE +    I     +     +    RLP      F P    A        
Sbjct: 30  PSIALPEPLEKEFSERLSICEAMARDEKGFLLDGKRLPDLKSKEFWPEATKA------HE 83

Query: 59  EYINSPRKKPTTLKWLISEYRKSAH--WGSLAVNSRISFESYFDQIIRKSGDFDYRKITT 116
            +I   R+     K L+  ++   +  W  LA +++  + +  D I    GD     +TT
Sbjct: 84  AFIRRGRQGIKDFKALVEAFQSETNPFWTKLAASTQRGYRTSGDIIKETWGDDLPVDLTT 143

Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
              +  +++   TP+ A QF   +  L  W   + Y   N     E    K  G  PW  
Sbjct: 144 VDAQDAIDALGETPAKANQFRAFLSRLMAWGASRGYCKTNVVEMTE----KIPGGEPWVP 199

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLL---------------YSGLRCSDSCRAGVQHLQNNI 221
                    W     P  AFE LL               ++G R  D           N 
Sbjct: 200 ---------W-----PNWAFEILLEHAPFHMQMIAMSAFFTGQRQGDVLAMTKPKAGENT 245

Query: 222 FSIKTQKTGTIITVELPDGFMKLLAMTP 249
            +++ QKTG  + + +   + K +   P
Sbjct: 246 IAVRAQKTGNTVWIPIHFAYRKWIDRVP 273


>gi|255326004|ref|ZP_05367092.1| tyrosine recombinase XerC [Rothia mucilaginosa ATCC 25296]
 gi|255296895|gb|EET76224.1| tyrosine recombinase XerC [Rothia mucilaginosa ATCC 25296]
          Length = 358

 Score = 43.1 bits (100), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 66/278 (23%), Positives = 103/278 (37%), Gaps = 38/278 (13%)

Query: 79  RKSAHWGSLAVNSRIS-FESYFDQIIRKSGDFDYRKITTKHIRSGVES---RKHTPSSAI 134
           R   H     + S IS  E +F  + R+ G      I    IR  + S   R+   S+  
Sbjct: 68  RYEKHRSEETIRSYISDLEGFFGYMARR-GVRHLDSIDASPIREWLGSLHLRQAARSTVA 126

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE--GSQP 192
           +  +++R  F WA  +E V  NP   +  PKR+       ++E M Q  +   E     P
Sbjct: 127 RRGSTLRTFFTWAQEEELVHANPTRGMRTPKRENHLPPVLSREQMNQLLTTLQERRAQDP 186

Query: 193 RLA--------FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
           R A         E L  SG+R S+     +Q +     +++    G    V +P G   L
Sbjct: 187 RDARLLRLEAVVEVLYASGMRISELTGLDLQSVDRANKTVRVLGKGNKERV-VPLGTPAL 245

Query: 245 LAMT-----------PIGKE---TFFINNDKQKMNATQF-----SIWFKAKATKAGVNKS 285
            A+            P G +     FI     + NA Q       +    + T+A     
Sbjct: 246 KALNRWVSYGRPQWIPEGAQGVTALFIGPRGGRANARQIREDLTRLLRTVENTQA---SG 302

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           AH +R  +AT   D GA    +    G  ++   + YT
Sbjct: 303 AHVLRHSAATHLVDGGADIRSVQELLGHSSLATTQIYT 340


>gi|253997434|ref|YP_003049498.1| tyrosine recombinase XerD [Methylotenera mobilis JLW8]
 gi|253984113|gb|ACT48971.1| tyrosine recombinase XerD [Methylotenera mobilis JLW8]
          Length = 302

 Score = 43.1 bits (100), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 48/223 (21%), Positives = 82/223 (36%), Gaps = 41/223 (18%)

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-- 187
           P S  + + S+R  +++ +R+  +AI+P L +E PK      +   +E++    +  +  
Sbjct: 74  PRSIGRLIASLRRFYRYNLRENLIAIDPTLQIESPKLPRSLPKSLNEEEVMALLNAPNVD 133

Query: 188 --EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
              G + +   E L  SGLR S+            + SIKT +     +V    G     
Sbjct: 134 DVVGLRDKAMLELLYASGLRVSE------------LVSIKTSEVSMSDSVVRVTGKGSKT 181

Query: 246 AMTPIGK-----------------------ETFFINNDKQKMNATQFSIWFKAKATKAGV 282
            + P+G+                       +  F+ N    M    F    K  A  AG+
Sbjct: 182 RLVPMGENAVEWISHYLKAARPQILQNRLSDALFVTNRGDAMTRQTFWHMIKRYALLAGI 241

Query: 283 NK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
            K  S H +R   AT   + GA    +    G   +   + YT
Sbjct: 242 TKHMSPHVLRHAFATHLLNHGADLRVVQMLLGHSDISTTQIYT 284


>gi|225025733|ref|ZP_03714925.1| hypothetical protein EIKCOROL_02637 [Eikenella corrodens ATCC
           23834]
 gi|224941514|gb|EEG22723.1| hypothetical protein EIKCOROL_02637 [Eikenella corrodens ATCC
           23834]
          Length = 301

 Score = 43.1 bits (100), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 54/266 (20%), Positives = 115/266 (43%), Gaps = 32/266 (12%)

Query: 87  LAVNSRISFESYFDQIIRK--SGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLF 144
           LA N+   +    +++ R+  +   D+++     + + V +    P+S ++ L++++ L+
Sbjct: 29  LAANTLAGYRRDLEKVARRLHAQGLDWQQADADALANAVYAPDEKPASQVRALSAVKQLY 88

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-------GSQPRLAFE 197
            +   Q   + NP   + RP R+   + P   E   Q  +  +        G + +   E
Sbjct: 89  GFLQLQNRRSDNPAQHL-RPPRQGRALPPLIGE--AQIDALLAAPDTETIFGLRDKAVLE 145

Query: 198 FLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIIT------VELPDGFMK-----L 244
            L  +GLR S++ +  +Q L  Q  + ++  +     I       V   + ++K     L
Sbjct: 146 TLYATGLRVSEAAQMQLQDLDLQRGVVTVIGKGNKQRIVPLGAEAVYWLERYLKTARGEL 205

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAK--ATKAGVNK-SAHGVRKFSATISADAG 301
           L  TP      F+   +++   ++  +W   K  A +AG+++ S HG+R   AT   + G
Sbjct: 206 LKHTPCD----FVFVGQKRSGISRQLVWQMVKRYAAEAGISELSPHGLRHAFATHLVNHG 261

Query: 302 ATAHELMATYGWKTVDQAETYTKGAD 327
           A    +    G  +++  + YT  A+
Sbjct: 262 ADLRSVQMMLGHASLNTTQIYTHVAN 287


>gi|330910760|gb|EGH39270.1| phage integrase [Escherichia coli AA86]
          Length = 357

 Score = 43.1 bits (100), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 34/147 (23%), Positives = 64/147 (43%), Gaps = 2/147 (1%)

Query: 93  ISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQ 150
           + + S    I RK  D     I+TK + + + +   +   +SA    +++  +F+ A+ +
Sbjct: 98  LDYASKIRAIRRKLPDKPLTDISTKEVAAMINTYVAEGKAASAKLIRSTLVDVFREAIAE 157

Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210
            +VA NP  +    K +    R    E ++ + +        RLA +  + +G R  D C
Sbjct: 158 GHVATNPVTATRTAKSEVRRSRLTANEYVEIYHAAKPLPIWLRLAMDLAVVTGQRVGDLC 217

Query: 211 RAGVQHLQNNIFSIKTQKTGTIITVEL 237
           R     + +N   IK  KTG  + + L
Sbjct: 218 RMKWSDINDNHLHIKQSKTGAKLAIPL 244


>gi|320321405|gb|EFW77525.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. glycinea str. B076]
 gi|320331161|gb|EFW87128.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. glycinea str. race 4]
 gi|330882731|gb|EGH16880.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. glycinea str. race 4]
          Length = 320

 Score = 42.7 bits (99), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 45/207 (21%), Positives = 86/207 (41%), Gaps = 27/207 (13%)

Query: 99  FDQIIRKSGDFDYRKITTKHI---RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI 155
           F   I  +   D+R++T  H+   R+ +E R    ++  + L ++  LF   +    +A 
Sbjct: 52  FSAFIGLASADDFRQVTRSHVLAWRANLEQRGLAGATIRRKLAALASLFDHLLESNAIAG 111

Query: 156 -NPCLSVERPK-RKTEGIRPWTKEDMQQFKSFWS-------EGSQPRLAFEFLLYSGLRC 206
            NP   V+RPK    EG  P   +   Q K+          +G + R     LLY GLR 
Sbjct: 112 GNPVHGVKRPKIESNEGKTPALGD--HQAKALLEAPDESTLKGLRDRAMLAVLLYHGLRR 169

Query: 207 SDSCRAGVQHLQN--NIFSIKTQKTGTIITVELPDGFMKLLAMTPI--GKETFFINNDKQ 262
            ++ +  V  +Q    I  +K    G         G ++ L + P+  G+  +++     
Sbjct: 170 EEAAQLQVSDIQERRGIQHLKIHGKG---------GKVRYLPLHPVAAGRIHWYLERSGH 220

Query: 263 KMNATQFSIWFKAKATKAGVNKSAHGV 289
            ++  +  ++   +    G + SA+G+
Sbjct: 221 HLDDKKVPLFISLRGKSTGASISANGI 247


>gi|325288214|ref|YP_004264395.1| integrase family protein [Syntrophobotulus glycolicus DSM 8271]
 gi|324963615|gb|ADY54394.1| integrase family protein [Syntrophobotulus glycolicus DSM 8271]
          Length = 403

 Score = 42.7 bits (99), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 60/124 (48%), Gaps = 13/124 (10%)

Query: 89  VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES---RKHTPSSAIQFLTSMRVLFK 145
           ++ RIS   YF ++     D    ++T +HI+   +S     HTP++ I +   +R   +
Sbjct: 114 LDGRIS--RYFTEL-----DITLAEVTPQHIQDFHQSIFDEGHTPNTVIHYHAVLRRALQ 166

Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP-RLAFEFLLYSGL 204
            AV++E +  NP   V+RPK+     + ++ E+M     F +    P  +  +   Y GL
Sbjct: 167 NAVKKEIIGSNPADRVDRPKKNVYHAQFYSAEEMMAL--FDAISDDPLEICVKLAAYYGL 224

Query: 205 RCSD 208
           R S+
Sbjct: 225 RRSE 228


>gi|299821615|ref|ZP_07053503.1| tyrosine recombinase XerD [Listeria grayi DSM 20601]
 gi|299817280|gb|EFI84516.1| tyrosine recombinase XerD [Listeria grayi DSM 20601]
          Length = 296

 Score = 42.7 bits (99), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 50/248 (20%), Positives = 96/248 (38%), Gaps = 23/248 (9%)

Query: 98  YFDQIIRKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA 154
           YFD  +   G  D   IT   + + +        +P +  ++L S+R  F + +  + + 
Sbjct: 32  YFDSFLEIEGITDPNSITRGTVVAFIAFARDADKSPRTIARYLASLRSFFHFLLHDQKMD 91

Query: 155 INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSC 210
            +P + +E PK+     +    E++++  +        G + +   E L  +GLR S+  
Sbjct: 92  HDPMIQIETPKQTKALPKVLHLEEVEKLLAAPDPNSILGLRDQAMLEILYATGLRVSELI 151

Query: 211 RAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET-------------FFI 257
              +  L  ++  I+T   G    + +P G      +T   +E               F+
Sbjct: 152 HLKLDDLHLHMGFIQTIGKGDKERI-IPLGHTATAVLTKYLEEARPKLRKPKYRNDYVFL 210

Query: 258 NNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKT 315
           N+    +    F    K  A KAG++K  + H +R   AT   + GA    +    G   
Sbjct: 211 NHHGGGLTRQGFWKLLKQLAQKAGIDKPITPHTLRHSFATHLLENGADLRSVQELLGHAD 270

Query: 316 VDQAETYT 323
           +   + YT
Sbjct: 271 ISTTQIYT 278


>gi|317051491|ref|YP_004112607.1| integrase family protein [Desulfurispirillum indicum S5]
 gi|316946575|gb|ADU66051.1| integrase family protein [Desulfurispirillum indicum S5]
          Length = 330

 Score = 42.7 bits (99), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 50/217 (23%), Positives = 84/217 (38%), Gaps = 25/217 (11%)

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP-WTKEDMQQFKSFWS 187
           + S+    L  +R +F W   + ++  NP   ++ PK   +   P + K+D Q+    + 
Sbjct: 102 SKSTYANVLCYVRAIFNWLQYEGFLEENPARDLKSPKGAYKNEMPVFLKDDEQKRLRAYL 161

Query: 188 EGSQPRL-------AFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELP 238
            G +              +LY+G+R S+ C+   +  H Q   F I T+K      + + 
Sbjct: 162 NGLERNFHNDRDTAVMLCVLYTGMRASEICQLTRRNFHRQGKAFQI-TRKGQKEQILPIA 220

Query: 239 DGFMKLLA------MTPIGKETFFINNDKQKMNATQFSIW------FKAKATKAGVNKSA 286
           D  M++L       M  I  + FF   + + +  T + IW       KA        + A
Sbjct: 221 DALMEILQFYWYEHMDSIDSDFFFCRTNGKPL--TPYIIWQRTSLHIKAAGIDLPRKRGA 278

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           H +R   AT     G    E+    G   V   E YT
Sbjct: 279 HLLRHTFATNLVRKGVNLIEIQRLLGHSHVAVTEIYT 315


>gi|71725244|ref|YP_272203.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. phaseolicola 1448A]
 gi|71558834|gb|AAZ38044.1| site-specific recombinase, phage integrase family [Pseudomonas
           syringae pv. phaseolicola 1448A]
          Length = 320

 Score = 42.7 bits (99), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 43/196 (21%), Positives = 81/196 (41%), Gaps = 27/196 (13%)

Query: 110 DYRKITTKHI---RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI-NPCLSVERPK 165
           D+R++T  H+   R+ +E R    ++  + L ++  LF   +    VA  NP   V+RP+
Sbjct: 63  DFRQVTRSHVLAWRADLEQRGLAGATIRRKLAALASLFDHLLDNNAVAGGNPVHGVKRPR 122

Query: 166 -RKTEGIRPWTKEDMQQFKSFWS-------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217
               EG  P   +   Q K+          +G + R     LLY GLR  ++ +  V  +
Sbjct: 123 IESNEGKTPALGD--HQAKALLEAPDESTLKGRRDRAMLAVLLYHGLRREEAAQLQVSDI 180

Query: 218 QN--NIFSIKTQKTGTIITVELPDGFMKLLAMTPI--GKETFFINNDKQKMNATQFSIWF 273
           Q    I  +K    G         G ++ L + P+  G+   ++   +  +   +  ++ 
Sbjct: 181 QERRGIQHLKIHGKG---------GKVRYLPLHPVAAGRIHLYLERSEHHLADRKVPLFI 231

Query: 274 KAKATKAGVNKSAHGV 289
             +    G   SA+G+
Sbjct: 232 SLRGKSTGAGVSANGI 247


>gi|16077547|ref|NP_388361.1| phage integrase [Bacillus subtilis subsp. subtilis str. 168]
 gi|221308305|ref|ZP_03590152.1| hypothetical protein Bsubs1_02718 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221312627|ref|ZP_03594432.1| hypothetical protein BsubsN3_02694 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221317550|ref|ZP_03598844.1| hypothetical protein BsubsJ_02653 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221321826|ref|ZP_03603120.1| hypothetical protein BsubsS_02724 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|81556749|sp|P96629|INT_BACSU RecName: Full=ICEBs1 integrase
 gi|1881291|dbj|BAA19318.1| ydcL [Bacillus subtilis]
 gi|2632780|emb|CAB12287.1| putative phage integrase [Bacillus subtilis subsp. subtilis str.
           168]
          Length = 368

 Score = 42.7 bits (99), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 73/166 (43%), Gaps = 21/166 (12%)

Query: 81  SAHWGSLAVNSRISFESYFDQIIRKS-GDF----DYRKITTKHIRSGVESRKHTPSSAI- 134
           S +  S  ++S+ ++      II K   D+    D +KIT + I    + RKH   + + 
Sbjct: 68  SIYLASCEIDSKPNYYQNQKYIINKHISDYFLKSDIQKITHREI---TDFRKHLMETGLS 124

Query: 135 -----QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
                  +TS+  +F  AV +E +  NPC +V+R     + ++ W  E   +FK F S  
Sbjct: 125 NKSVNNIMTSLSKIFDTAVHEEILKRNPCDNVKRLPLTRKKMKFWRPE---EFKKFISLI 181

Query: 190 SQPRLAFEFL----LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
            Q +L F+        +GLRC +      + +   +  I   K+ T
Sbjct: 182 PQDQLLFKTFYTVAFLTGLRCGEMLALQWKDIDKILLEIDVHKSCT 227


>gi|153940640|ref|YP_001391047.1| site-specific tyrosine recombinase XerC [Clostridium botulinum F
           str. Langeland]
 gi|152936536|gb|ABS42034.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum F str. Langeland]
 gi|322806030|emb|CBZ03597.1| putative integrase/recombinase [Clostridium botulinum H04402 065]
          Length = 326

 Score = 42.7 bits (99), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 56/263 (21%), Positives = 116/263 (44%), Gaps = 22/263 (8%)

Query: 96  ESYFDQI-IRKSGDFDYRKITTKHI---RSGVESRKHTPSSA-IQFLTSMRVLFKWAV-R 149
           E+ F+ I I+   D D + I+   +    S VE+ ++  S A  + + +++  F++   +
Sbjct: 59  ETEFNDIEIKDISDEDIKNISLTDLFAFVSFVENYRNNGSYAKARKVATLKSFFRFLQGK 118

Query: 150 QEYVAINPCLSVERPK-RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF-EFLLYSGLRCS 207
            + +  NP L +E PK  K   +     E  +   S   +  +  L      L  GLR S
Sbjct: 119 VKIIKENPALELESPKISKRNPVYLTLDESKRLLSSIDGKFKERDLCIVTMFLNCGLRLS 178

Query: 208 DSCRAGVQHLQNNIFSI--KTQKTGTI----ITVELPDGFM---KLLAMTPIGKETFFIN 258
           + C   + +++N+I ++  K  K  T+      ++  + ++   K +    + K+  F++
Sbjct: 179 ELCGINISNIKNDILTVVGKGNKERTVYLNKACIKTLNDYLSVRKEMGEKIVDKDALFLS 238

Query: 259 NDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATIS-ADAGATAHELMATYGWK 314
            +  ++N     +  K    KAG++    S H +R  +AT+     G     L    G +
Sbjct: 239 KNYTRINKRSVEMLVKKYVKKAGLDGEKYSPHKLRHTAATLMYKHGGVDIRSLQMILGHE 298

Query: 315 TVDQAETYTK-GADRIRLGIKNS 336
            +   + YT   +DR+R  +K++
Sbjct: 299 NISTTQIYTHVDSDRLREAVKSN 321


>gi|148379752|ref|YP_001254293.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum A str. ATCC 3502]
 gi|153934110|ref|YP_001384049.1| site-specific tyrosine recombinase XerC [Clostridium botulinum A
           str. ATCC 19397]
 gi|153936224|ref|YP_001387591.1| site-specific tyrosine recombinase XerC [Clostridium botulinum A
           str. Hall]
 gi|168180365|ref|ZP_02615029.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum NCTC 2916]
 gi|226949034|ref|YP_002804125.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum A2 str. Kyoto]
 gi|148289236|emb|CAL83332.1| tyrosine recombinase [Clostridium botulinum A str. ATCC 3502]
 gi|152930154|gb|ABS35654.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum A str. ATCC 19397]
 gi|152932138|gb|ABS37637.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum A str. Hall]
 gi|182668709|gb|EDT80687.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum NCTC 2916]
 gi|226843631|gb|ACO86297.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum A2 str. Kyoto]
          Length = 326

 Score = 42.7 bits (99), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 56/263 (21%), Positives = 116/263 (44%), Gaps = 22/263 (8%)

Query: 96  ESYFDQI-IRKSGDFDYRKITTKHI---RSGVESRKHTPSSA-IQFLTSMRVLFKWAV-R 149
           E+ F+ I I+   D D + I+   +    S VE+ ++  S A  + + +++  F++   +
Sbjct: 59  ETEFNDIEIKDISDEDIKNISLTDLFAFVSFVENYRNNGSYAKARKVATLKSFFRFLQGK 118

Query: 150 QEYVAINPCLSVERPK-RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF-EFLLYSGLRCS 207
            + +  NP L +E PK  K   +     E  +   S   +  +  L      L  GLR S
Sbjct: 119 VKIIKENPALELESPKISKRNPVYLTLDESKRLLSSIDGKFKERDLCIVTMFLNCGLRLS 178

Query: 208 DSCRAGVQHLQNNIFSI--KTQKTGTI----ITVELPDGFM---KLLAMTPIGKETFFIN 258
           + C   + +++N+I ++  K  K  T+      ++  + ++   K +    + K+  F++
Sbjct: 179 ELCGINISNIKNDILTVVGKGNKERTVYLNKACIKTLNDYLNVRKEMGEKIVDKDALFLS 238

Query: 259 NDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATIS-ADAGATAHELMATYGWK 314
            +  ++N     +  K    KAG++    S H +R  +AT+     G     L    G +
Sbjct: 239 KNYTRINKRSVEMLVKKYVKKAGLDGEKYSPHKLRHTAATLMYKHGGVDIRSLQMILGHE 298

Query: 315 TVDQAETYTK-GADRIRLGIKNS 336
            +   + YT   +DR+R  +K++
Sbjct: 299 NISTTQIYTHVDSDRLREAVKSN 321


>gi|170754911|ref|YP_001781341.1| site-specific tyrosine recombinase XerC [Clostridium botulinum B1
           str. Okra]
 gi|169120123|gb|ACA43959.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum B1 str. Okra]
          Length = 326

 Score = 42.7 bits (99), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 56/263 (21%), Positives = 116/263 (44%), Gaps = 22/263 (8%)

Query: 96  ESYFDQI-IRKSGDFDYRKITTKHI---RSGVESRKHTPSSA-IQFLTSMRVLFKWAV-R 149
           E+ F+ I I+   D D + I+   +    S VE+ ++  S A  + + +++  F++   +
Sbjct: 59  EAEFNDIEIKDISDEDIKNISLTDLFAFVSFVENYRNNGSYAKARKVATLKSFFRFLQGK 118

Query: 150 QEYVAINPCLSVERPK-RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF-EFLLYSGLRCS 207
            + +  NP L +E PK  K   +     E  +   S   +  +  L      L  GLR S
Sbjct: 119 VKIIKENPALELESPKISKRNPVYLTLDESKRLLSSIDGKFKERDLCIVTMFLNCGLRLS 178

Query: 208 DSCRAGVQHLQNNIFSI--KTQKTGTI----ITVELPDGFM---KLLAMTPIGKETFFIN 258
           + C   + +++N+I ++  K  K  T+      ++  + ++   K +    + K+  F++
Sbjct: 179 ELCGINISNIKNDILTVVGKGNKERTVYLNKACIKTLNDYLSVRKEMGEKIVDKDALFLS 238

Query: 259 NDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATIS-ADAGATAHELMATYGWK 314
            +  ++N     +  K    KAG++    S H +R  +AT+     G     L    G +
Sbjct: 239 KNYTRINKRSVEMLVKKYVKKAGLDGEKYSPHKLRHTAATLMYKHGGVDIRSLQMILGHE 298

Query: 315 TVDQAETYTK-GADRIRLGIKNS 336
            +   + YT   +DR+R  +K++
Sbjct: 299 NISTTQIYTHVDSDRLREAVKSN 321


>gi|228926906|ref|ZP_04089972.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|228936985|ref|ZP_04099727.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|228822700|gb|EEM68590.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|228832641|gb|EEM78212.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
          Length = 368

 Score = 42.7 bits (99), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 27/111 (24%), Positives = 52/111 (46%), Gaps = 4/111 (3%)

Query: 101 QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL---FKWAVRQEYVAINP 157
            II   G     K+   HI+   +S  ++  +    L   R+L      AV+Q  ++ NP
Sbjct: 95  HIIPNIGMISLHKLNVMHIQKCYQSALNSGIANNTILFQHRILTAALNLAVKQNIISRNP 154

Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD 208
                 PK++   I+ WT+E+++QF    S+ S+  + +   + +G+R  +
Sbjct: 155 ATLAVIPKKEKSSIQTWTEEEVKQF-LLHSQESRYHIGYLLAITTGMRLGE 204


>gi|225018198|ref|ZP_03707390.1| hypothetical protein CLOSTMETH_02136 [Clostridium methylpentosum
           DSM 5476]
 gi|224948995|gb|EEG30204.1| hypothetical protein CLOSTMETH_02136 [Clostridium methylpentosum
           DSM 5476]
          Length = 348

 Score = 42.7 bits (99), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 28/111 (25%), Positives = 51/111 (45%), Gaps = 12/111 (10%)

Query: 107 GDFDYRKITTKHIRS-----GVESRKHT------PSSAIQFLTSMRVLFKWAVRQEYVAI 155
           G     KIT +H++      G E    T      P +   +L+ +  +F +A++ + V  
Sbjct: 54  GHLHMDKITVRHVQKFIHNLGEEGINQTTGGRLAPKTIHHYLSFVSTIFSYAIKMQMVKN 113

Query: 156 NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-EGSQPRLAFEFLLYSGLR 205
           NPC  V+ PK + + +  +T E+ Q+F +    E  + +  F   +Y G R
Sbjct: 114 NPCEHVQLPKAEQKELDCYTLEEAQEFLNLLQKEPLKYQAFFTLAIYGGFR 164


>gi|48428759|gb|AAT42408.1| site-specific recombinase XerC [Collimonas fungivorans Ter331]
          Length = 324

 Score = 42.7 bits (99), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 49/112 (43%), Gaps = 11/112 (9%)

Query: 108 DFDYRKITTKHIR---SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP 164
           ++ +  IT  HIR   + + SR   PSS  + L++ R  F+W   Q  +A NP   V+ P
Sbjct: 48  NWQFAAITHFHIRKFAAQLHSRGLNPSSIARKLSAWRGFFEWLAEQTTLASNPVEGVKAP 107

Query: 165 KRKTEGIRPWTKEDMQQFKS----FWSEGSQPRLA----FEFLLYSGLRCSD 208
           KR     +    +D     +        GS   L     FE L  SGLR S+
Sbjct: 108 KRTKPLPKAMAADDAIHLVASGNPLADAGSSMALCNQAMFELLYSSGLRVSE 159


>gi|237795202|ref|YP_002862754.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum Ba4 str. 657]
 gi|229261716|gb|ACQ52749.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum Ba4 str. 657]
          Length = 326

 Score = 42.7 bits (99), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 56/263 (21%), Positives = 116/263 (44%), Gaps = 22/263 (8%)

Query: 96  ESYFDQI-IRKSGDFDYRKITTKHI---RSGVESRKHTPSSA-IQFLTSMRVLFKWAV-R 149
           E+ F+ I I+   D D + I+   +    S VE+ ++  S A  + + +++  F++   +
Sbjct: 59  ETEFNDIEIKDISDEDIKNISLTDLFAFVSFVENYRNNGSYAKARKVATLKSFFRFLQGK 118

Query: 150 QEYVAINPCLSVERPK-RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF-EFLLYSGLRCS 207
            + +  NP L +E PK  K   +     E  +   S   +  +  L      L  GLR S
Sbjct: 119 VKIIKENPALELESPKISKRNPVYLTLDESKRLLSSIDGKFKERDLCIVTMFLNCGLRLS 178

Query: 208 DSCRAGVQHLQNNIFSI--KTQKTGTI----ITVELPDGFM---KLLAMTPIGKETFFIN 258
           + C   + +++N+I ++  K  K  T+      ++  + ++   K +    + K+  F++
Sbjct: 179 ELCGINISNIKNDILTVVGKGNKERTVYLNKACIKTLNDYLSVRKEIGEKIVDKDALFLS 238

Query: 259 NDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATIS-ADAGATAHELMATYGWK 314
            +  ++N     +  K    KAG++    S H +R  +AT+     G     L    G +
Sbjct: 239 KNYTRINKRSVEMLVKKYVKKAGLDGEKYSPHKLRHTAATLMYKHGGVDIRSLQMILGHE 298

Query: 315 TVDQAETYTK-GADRIRLGIKNS 336
            +   + YT   +DR+R  +K++
Sbjct: 299 NISTTQIYTHVDSDRLREAVKSN 321


>gi|170761083|ref|YP_001787113.1| site-specific tyrosine recombinase XerC [Clostridium botulinum A3
           str. Loch Maree]
 gi|169408072|gb|ACA56483.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum A3 str. Loch Maree]
          Length = 326

 Score = 42.7 bits (99), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 56/263 (21%), Positives = 116/263 (44%), Gaps = 22/263 (8%)

Query: 96  ESYFDQI-IRKSGDFDYRKITTKHI---RSGVESRKHTPSSA-IQFLTSMRVLFKWAV-R 149
           E+ F+ I I+   D D + I+   +    S VE+ ++  S A  + + +++  F++   +
Sbjct: 59  ETEFNDIEIKDISDEDIKNISLTDLFAFVSFVENYRNNGSYAKARKVATLKSFFRFLQGK 118

Query: 150 QEYVAINPCLSVERPK-RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF-EFLLYSGLRCS 207
            + +  NP L +E PK  K   +     E  +   S   +  +  L      L  GLR S
Sbjct: 119 VKIIKENPALELESPKISKRNPVYLTLDESKRLLSSIDGKFKERDLCIVTMFLNCGLRLS 178

Query: 208 DSCRAGVQHLQNNIFSI--KTQKTGTI----ITVELPDGFM---KLLAMTPIGKETFFIN 258
           + C   + +++N+I ++  K  K  T+      ++  + ++   K +    + K+  F++
Sbjct: 179 ELCGINISNIKNDILTVVGKGNKERTVYLNKACIKTLNDYLSARKEMGEKIVDKDALFLS 238

Query: 259 NDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATIS-ADAGATAHELMATYGWK 314
            +  ++N     +  K    KAG++    S H +R  +AT+     G     L    G +
Sbjct: 239 KNYTRINKRSVEMLVKKYVKKAGLDGEKYSPHKLRHTAATLMYKHGGVDIRSLQMILGHE 298

Query: 315 TVDQAETYTK-GADRIRLGIKNS 336
            +   + YT   +DR+R  +K++
Sbjct: 299 NISTTQIYTHVDSDRLREAVKSN 321


>gi|331084833|ref|ZP_08333921.1| hypothetical protein HMPREF0987_00224 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330410927|gb|EGG90349.1| hypothetical protein HMPREF0987_00224 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 289

 Score = 42.7 bits (99), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 32/144 (22%), Positives = 61/144 (42%), Gaps = 16/144 (11%)

Query: 83  HWGSLAVNSRI---SFESYFDQIIRKSGDFDYRKI---TTKHIRSGVE--SRKHTPSSAI 134
           HW       ++   + ++Y++   R  G     K+   T  HI+  +   S+K+ PS+  
Sbjct: 75  HWMETVCAVKLKNTTIQNYYNNYNRIKGSIQNIKLIELTQSHIQMAINEISKKYKPSTVK 134

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS-----FWSEG 189
             L ++    ++A +   +A NPC  +           P  +ED  ++ +      + E 
Sbjct: 135 SSLNALSTCLEYAEKNMIIANNPCKCIVISNYTDRSFVPIEQEDEMKYITKDMLDLFFEA 194

Query: 190 SQ---PRLAFEFLLYSGLRCSDSC 210
           +Q    R  F  LL++GLR  + C
Sbjct: 195 AQNCRSRYYFYILLHTGLRAGELC 218


>gi|291513999|emb|CBK63209.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
          Length = 390

 Score = 42.7 bits (99), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 47/208 (22%), Positives = 84/208 (40%), Gaps = 20/208 (9%)

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP--WTKEDMQQFKSFWSEGSQPR 193
           F    + + K+A+ Q+ +  NPC  V      T  +R    + E++ Q  +   +    R
Sbjct: 178 FFQRFKKVIKYAIDQDILLKNPCTGVPCVVDDT-ALRKDVLSLEEIAQLANTPYQNMDVR 236

Query: 194 LAFEFLLYSGLRCSDSCR---AGVQHLQNNIFSIKTQKTG----TIITVELPDGFMKLLA 246
            AF F LY+GLR  D      + V +    I   + + TG    +I+T+ L +  +KL+ 
Sbjct: 237 RAFLFCLYAGLRYCDVVDLKYSNVDYANKTIRFDQNKTTGHSTHSIVTIPLSNTLLKLIG 296

Query: 247 MTPIGKETFF-INNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVR-KFSATISADAGA 302
             P      F + +    + A    IW      +AG+ K    H  R  F+  +  +   
Sbjct: 297 ERPEKDGPIFTLPSHTGCLKA--LRIW----VARAGIEKHITWHCARHSFAVNLLGECHT 350

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIR 330
               + +  G   +   E YT+  D ++
Sbjct: 351 DIKTVASLLGHSGLKHTEKYTRAVDSLK 378


>gi|257486889|ref|ZP_05640930.1| Phage integrase:Phage integrase, N-terminal SAM-like protein
           [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|331013460|gb|EGH93516.1| Phage integrase [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 319

 Score = 42.4 bits (98), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 52/244 (21%), Positives = 94/244 (38%), Gaps = 27/244 (11%)

Query: 99  FDQIIRKSGDFDYRKITTKHI---RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI 155
           F   +  +G  ++R +T  H+   R+ +E R    ++  + L ++  LF   +    VA 
Sbjct: 52  FCSFVGLAGADEFRAVTRAHVLAWRAQLEQRGLAGATIRRKLAALASLFDHLLENNAVAG 111

Query: 156 -NPCLSVERPK-RKTEGIRPWTKEDMQQFKSFWS-------EGSQPRLAFEFLLYSGLRC 206
            NP   V+RP+    EG  P   +   Q K+          +G + R     LLY GLR 
Sbjct: 112 GNPVHGVKRPRIDSNEGKTPALAD--HQAKALLDAPPAESLKGLRDRAVLAVLLYHGLRR 169

Query: 207 SDSCRAGVQHLQN--NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM 264
            ++ +     LQ    I  ++ Q  G         G ++ L + P+  E  +   ++   
Sbjct: 170 EEAAQLQTSDLQERRGIKHLRVQGKG---------GKLRWLPLHPVAAERIYAYIEQNME 220

Query: 265 NATQFSIWFKA-KATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
               +   F++ +   +G   SA G+ K     +  AG    E +  +G +         
Sbjct: 221 RGAGYGSLFRSLRGRSSGTGLSADGIYKIVCHWAISAGIKV-EGLGVHGLRATAATNALE 279

Query: 324 KGAD 327
             AD
Sbjct: 280 HDAD 283


>gi|215486111|ref|YP_002328542.1| predicted integrase [Escherichia coli O127:H6 str. E2348/69]
 gi|312968948|ref|ZP_07783155.1| integrase [Escherichia coli 2362-75]
 gi|215264183|emb|CAS08527.1| predicted integrase [Escherichia coli O127:H6 str. E2348/69]
 gi|312286350|gb|EFR14263.1| integrase [Escherichia coli 2362-75]
          Length = 357

 Score = 42.4 bits (98), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 34/147 (23%), Positives = 64/147 (43%), Gaps = 2/147 (1%)

Query: 93  ISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQ 150
           + + S    I RK  D     I+TK + + + +   +   +SA    +++  +F+ A+ +
Sbjct: 98  LDYASKIRAIRRKLPDKPLTDISTKEVAAMLNTYVAEGKAASAKLIRSTLVDVFREAIAE 157

Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210
            +VA NP  +    K +    R    E ++ + +        RLA +  + +G R  D C
Sbjct: 158 GHVATNPVTATRTAKSEVRRSRLTANEYVEIYHAAEPLPIWLRLAMDLAVVTGQRVGDLC 217

Query: 211 RAGVQHLQNNIFSIKTQKTGTIITVEL 237
           R     + +N   IK  KTG  + + L
Sbjct: 218 RMKWSDINDNHLHIKQSKTGAKLAIPL 244


>gi|325982077|ref|YP_004294479.1| hypothetical protein NAL212_1430 [Nitrosomonas sp. AL212]
 gi|325531596|gb|ADZ26317.1| Protein of unknown function DUF3596 [Nitrosomonas sp. AL212]
          Length = 361

 Score = 42.4 bits (98), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 42/186 (22%), Positives = 73/186 (39%), Gaps = 9/186 (4%)

Query: 97  SYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAIN 156
           + +  +I   G+    ++T   ++  +     +       LT +R +F+     E +  N
Sbjct: 109 AIYHHLIPTFGNLTISELTASKVKEWLSELPCSNKRKSNILTPLRQMFEELYLDEIIDKN 168

Query: 157 PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD---SCRAG 213
           P   V+    KT    P+T+E++   K       Q +   +F  YSGLR S+    C   
Sbjct: 169 PLSRVKNLPNKTREPEPFTQEEI--IKILNELTGQAKNLIQFAFYSGLRTSELIALCWKN 226

Query: 214 VQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF 273
           V+  QN IF  +    G +   +   G  + + + P  KE      ++Q     Q  I F
Sbjct: 227 VEFEQNRIFIKQAHVRGQLKDTKTKSG-KREVTLQPQAKEALL---NQQAFTGKQNQIVF 282

Query: 274 KAKATK 279
               TK
Sbjct: 283 HNPKTK 288


>gi|315122310|ref|YP_004062799.1| hypothetical protein CKC_02810 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495712|gb|ADR52311.1| hypothetical protein CKC_02810 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 40

 Score = 42.4 bits (98), Expect = 0.095,   Method: Composition-based stats.
 Identities = 20/37 (54%), Positives = 25/37 (67%)

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIK 334
           A+AG  +HELMA YGW  +  AE YTK AD+ +  IK
Sbjct: 2   ANAGVRSHELMAMYGWSKLSMAEVYTKEADKKKNVIK 38


>gi|45657471|ref|YP_001557.1| putative integrase/recombinase protein [Leptospira interrogans
           serovar Copenhageni str. Fiocruz L1-130]
 gi|45600710|gb|AAS70194.1| putative integrase/recombinase protein [Leptospira interrogans
           serovar Copenhageni str. Fiocruz L1-130]
          Length = 332

 Score = 42.4 bits (98), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 45/202 (22%), Positives = 75/202 (37%), Gaps = 16/202 (7%)

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS------ 190
           L+S+R  +K  +R++ V  NP   +  PK + E  + +   + ++   F SE +      
Sbjct: 110 LSSLRTFYKVLLREDLVKSNPATQLSFPKVRKEVPKNFRINETEEILEFESENASEVSEI 169

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-----TIITVELPDGFMKLL 245
           + R   E L  SGLR  +   A +  L  ++  +K    G          E      K L
Sbjct: 170 RDRAMIEVLYSSGLRVFELVNAKLNSLSKDLTVLKVLGKGRKERFVYFGKEAVSSLQKYL 229

Query: 246 AMTPIG---KETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADA 300
               +     E  F+N   +K+           +  K G  K+   H  R   AT   DA
Sbjct: 230 EYRNVSFPDAEEIFLNQRGKKLTTRGVRYILNERRKKMGWEKTITPHKFRHTFATDLLDA 289

Query: 301 GATAHELMATYGWKTVDQAETY 322
           GA    +    G  ++   + Y
Sbjct: 290 GAEIRAVQELLGHSSLSTTQIY 311


>gi|194430644|ref|ZP_03063091.1| site-specific recombinase, phage integrase family [Escherichia coli
           B171]
 gi|194411310|gb|EDX27685.1| site-specific recombinase, phage integrase family [Escherichia coli
           B171]
          Length = 341

 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 45/197 (22%), Positives = 79/197 (40%), Gaps = 6/197 (3%)

Query: 36  PYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISF 95
           P   ES  + A    L     K E   + R +  T   L  ++  SA++  L+  ++  +
Sbjct: 28  PTSRESVTLTAIKDGLAALWKKYEETVNNRDRAMTFGRLWEKFLASAYYSDLSPRTQKDY 87

Query: 96  ESYFDQIIRKSGDFDYRKITTKHIRSGVESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVA 154
             +  +++   G      I  +HIR  ++ R + + + A    +SM  ++ W   + YV 
Sbjct: 88  LQHQKKLLAVFGKVPADSIKPEHIRRYMDKRGEQSKTQANHEKSSMSRVYSWGYERGYVK 147

Query: 155 INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR-LAFEFLLYSGLRCSDSCRAG 213
            NPC  V + K K        KE    +++  S    P  +A E       R SD     
Sbjct: 148 GNPCAGVSKFKAKNRERYVTDKE----YQAVLSVAPLPVFIAMEIAYLCAARVSDVLSLK 203

Query: 214 VQHLQNNIFSIKTQKTG 230
            + + N+   I+  KTG
Sbjct: 204 WEQIGNDGIFIQQGKTG 220


>gi|312962849|ref|ZP_07777336.1| integrase/recombinase XerD [Pseudomonas fluorescens WH6]
 gi|311282876|gb|EFQ61470.1| integrase/recombinase XerD [Pseudomonas fluorescens WH6]
          Length = 298

 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 51/239 (21%), Positives = 102/239 (42%), Gaps = 23/239 (9%)

Query: 112 RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
           R++   H+   +E + + P S  +FL+ +R  +++ +R++ + ++P L ++ P+      
Sbjct: 53  RELILDHLAWRLE-QNYKPRSTARFLSGVRGFYRYLLREKLITLDPTLQIDMPQLGRPLP 111

Query: 172 RPWTKEDMQQFKSF--WSE--GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227
           +  ++ D++   +    SE  G + R   E L   GLR ++     ++ +      ++  
Sbjct: 112 KSLSEADVEALLAAPDLSEAIGQRDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVM 171

Query: 228 KTGT-----------IITVE--LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274
             G+           I+ VE  + +   +LL   P   +  F +   ++M    F    K
Sbjct: 172 GKGSKERLVPMGEEAIVWVERYMREARSELLGGRP--SDVLFPSLRGEQMTRQTFWHRIK 229

Query: 275 AKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            +A  AG+ K  S H +R   AT   + GA    +    G   +   + YT  A R RL
Sbjct: 230 HQAKVAGIGKTLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARL 287


>gi|312868308|ref|ZP_07728508.1| site-specific recombinase, phage integrase family [Streptococcus
           parasanguinis F0405]
 gi|311096053|gb|EFQ54297.1| site-specific recombinase, phage integrase family [Streptococcus
           parasanguinis F0405]
          Length = 383

 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 20/83 (24%), Positives = 45/83 (54%), Gaps = 1/83 (1%)

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           TP+   Q +  +  LF  A+ + +   NPC ++ +   K + +  +T E  ++F+S++ E
Sbjct: 131 TPTHINQQMIFVHKLFDIAISKGFRQDNPCDAIRKLPEKHKEMSYYTPEQFKKFESYFEE 190

Query: 189 GSQP-RLAFEFLLYSGLRCSDSC 210
              P +L +  L+++G+R  ++ 
Sbjct: 191 SEYPFKLLYRVLMFTGIRMGEAL 213


>gi|291482891|dbj|BAI83966.1| hypothetical protein BSNT_00830 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 368

 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 59/132 (44%), Gaps = 16/132 (12%)

Query: 110 DYRKITTKHIRSGVESRKHTPSSAI------QFLTSMRVLFKWAVRQEYVAINPCLSVER 163
           D +KIT + I    + RKH   + +        +TS+  +F  AV +E +  NPC +V+R
Sbjct: 102 DIQKITHREI---TDFRKHLMETGLSNKSVNNIMTSLSKIFDTAVHEEILKRNPCDNVKR 158

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL----LYSGLRCSDSCRAGVQHLQN 219
                + ++ W  E   +FK F S   Q +L F+        +GLRC +      + +  
Sbjct: 159 LPLTRKKMKFWRPE---EFKKFISLIPQDQLLFKTFYTVAFLTGLRCGEMLALQWKDIDK 215

Query: 220 NIFSIKTQKTGT 231
            +  I   K+ T
Sbjct: 216 ILLEIDVHKSCT 227


>gi|229170493|ref|ZP_04298144.1| Site-specific recombinase, phage integrase [Bacillus cereus AH621]
 gi|228612963|gb|EEK70137.1| Site-specific recombinase, phage integrase [Bacillus cereus AH621]
          Length = 352

 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 46/210 (21%), Positives = 86/210 (40%), Gaps = 15/210 (7%)

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           +PS+    L ++RV+F++ + +E +  NP   V+      E I   T +++++     ++
Sbjct: 111 SPSTINTRLKTLRVMFRFLIDEELMESNPMKQVKDVNEPQEEIAVLTVDELRRLLDVPNK 170

Query: 189 GS----QPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIK--TQKTGTIITVELPDG 240
            S    +  +    LL + LR S++    V    L   + +++    K+     V + + 
Sbjct: 171 RSYSDFRNYVIMNLLLDTFLRISEALSLTVNDIDLSTKVITVRATVAKSRKARIVPIKNT 230

Query: 241 FMKLLAMTPIGKETF-----FINNDKQKMNATQFSIWFKAKATKAGVNKSAHG--VRKFS 293
              LL       E F     FI N +++M+   F    K  A + G+ K+ H    R   
Sbjct: 231 TANLLKDLIKENEEFETDHVFITNYEEQMDRNHFRKRLKGYAKETGITKNVHPHLFRHTG 290

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYT 323
           AT+  +AG     L    G   +     YT
Sbjct: 291 ATMFLEAGGDIRHLQMLLGHADLRMVMRYT 320


>gi|282859943|ref|ZP_06269031.1| tyrosine recombinase XerD [Prevotella bivia JCVIHMP010]
 gi|282587346|gb|EFB92563.1| tyrosine recombinase XerD [Prevotella bivia JCVIHMP010]
          Length = 310

 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 84/209 (40%), Gaps = 17/209 (8%)

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFWS 187
           S  + L+ +R  +++ V   Y+  +P   +E PK+        +  +    +Q       
Sbjct: 75  SLARILSGVRHFYRFLVLDGYLEADPTELLESPKQPQHLPEVLSTAEVDIILQSIDLSKW 134

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---IITV------ELP 238
           EG + +   E L   GLR S+     + +L  +   I+    G+   ++ +      EL 
Sbjct: 135 EGQRNKAIIEMLFSCGLRVSELTNLKLSNLYLDDLYIRVMGKGSKERLVPISPRAVEELN 194

Query: 239 DGFMKLLAMT-PIGKETF-FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSA 294
             F+    M    G+E + F+N     +  T   I  K  A  AG+ K  S H +R   A
Sbjct: 195 YWFLDRNQMVIKEGEEDYVFLNRRGAHLTRTMILIMLKRYAKGAGIKKTISPHTLRHSFA 254

Query: 295 TISADAGATAHELMATYGWKTVDQAETYT 323
           T   + GA    + A  G ++V   E YT
Sbjct: 255 TALLEGGADLRSIQAMLGHESVVTTEIYT 283


>gi|126461068|ref|YP_001042182.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17029]
 gi|126102732|gb|ABN75410.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17029]
          Length = 354

 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 55/142 (38%), Gaps = 16/142 (11%)

Query: 198 FLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKLLAM-------- 247
           FLL +G R  ++    VQHL  +     +   K G    V  P    ++LA         
Sbjct: 175 FLLGTGCRTGEALGLAVQHLHIETRQAHVGITKNGDGKMVSFPTRTKRILAACGLPEAGA 234

Query: 248 ---TPIGKETFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSAHGVRKFSATISADAGA 302
              TP G+    +N D QK+   Q    F A   A K G + + H +R   AT       
Sbjct: 235 VFRTPKGRPYRLVNGDGQKLGG-QIKGAFDAARTAAKLGEDVTPHTLRHTFATWHYAVNK 293

Query: 303 TAHELMATYGWKTVDQAETYTK 324
               LM   GWK  D A  YTK
Sbjct: 294 DLILLMERGGWKRADLAIGYTK 315


>gi|296162521|ref|ZP_06845311.1| integrase family protein [Burkholderia sp. Ch1-1]
 gi|295887229|gb|EFG67057.1| integrase family protein [Burkholderia sp. Ch1-1]
          Length = 565

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 61/138 (44%), Gaps = 18/138 (13%)

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG---IRPWTKEDMQQF 182
           R+  PSS    L+ +  +F+W V Q+YV  NP   V     ++ G   IR    ++ +  
Sbjct: 302 RRLRPSSVAYALSVLSAMFRWLVEQQYVVANPFAGVTAGNARSAGHVRIRSLADDEWRFA 361

Query: 183 KSF---------WSEGSQPRLAF--EFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQ 227
           +           WS  +  RL F  +F L +GLR ++  +A + H+      +I+   T 
Sbjct: 362 RHVASELSTVHGWSVEAAQRLCFILDFELATGLRATELVQARLGHIYFGDAADIWLRLTG 421

Query: 228 KTGTIITVELPDGFMKLL 245
           K   I  V +P   M+ L
Sbjct: 422 KGRRIARVAMPPLAMQAL 439


>gi|227827993|ref|YP_002829773.1| integrase family protein [Sulfolobus islandicus M.14.25]
 gi|229585262|ref|YP_002843764.1| integrase family protein [Sulfolobus islandicus M.16.27]
 gi|238620221|ref|YP_002915047.1| integrase family protein [Sulfolobus islandicus M.16.4]
 gi|227459789|gb|ACP38475.1| integrase family protein [Sulfolobus islandicus M.14.25]
 gi|228020312|gb|ACP55719.1| integrase family protein [Sulfolobus islandicus M.16.27]
 gi|238381291|gb|ACR42379.1| integrase family protein [Sulfolobus islandicus M.16.4]
          Length = 291

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 45/205 (21%), Positives = 87/205 (42%), Gaps = 18/205 (8%)

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           VE R+    +   ++ ++R   KW      V++ P +    PK + + ++   +  +Q+ 
Sbjct: 77  VEKRRAKSVTIRYYIIAVRRFLKWL----NVSVKPPI----PKVRRKEVKALDESQIQKV 128

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH--LQNNIFSIKTQKTGTIITVELPDG 240
            +   + ++ +L    LL +GLR ++     V+   L+NN+  ++  K G    V   D 
Sbjct: 129 LN-TCKRTKDKLIIRLLLDTGLRANELLSVLVKDVDLENNMIRVRNTKNGEERVVFFTDE 187

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSAHGVRKFSATISA 298
             +LL     GK+      D++  + T  +++ K K    K  +    H +R   AT+S 
Sbjct: 188 TKQLLRKYMKGKKL-----DEKLFDITYDALYRKLKRLGNKVEIELRPHILRHTFATLSL 242

Query: 299 DAGATAHELMATYGWKTVDQAETYT 323
             G     L    G K +   + YT
Sbjct: 243 KRGINVITLQKLLGHKDIKTTQIYT 267


>gi|227830730|ref|YP_002832510.1| integrase [Sulfolobus islandicus L.S.2.15]
 gi|229581710|ref|YP_002840109.1| integrase family protein [Sulfolobus islandicus Y.N.15.51]
 gi|284998243|ref|YP_003420011.1| phage integrase family protein [Sulfolobus islandicus L.D.8.5]
 gi|227457178|gb|ACP35865.1| integrase family protein [Sulfolobus islandicus L.S.2.15]
 gi|228012426|gb|ACP48187.1| integrase family protein [Sulfolobus islandicus Y.N.15.51]
 gi|284446139|gb|ADB87641.1| phage integrase family protein [Sulfolobus islandicus L.D.8.5]
          Length = 291

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 45/205 (21%), Positives = 87/205 (42%), Gaps = 18/205 (8%)

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           VE R+    +   ++ ++R   KW      V++ P +    PK + + ++   +  +Q+ 
Sbjct: 77  VEKRRAKSVTIRYYIIAVRRFLKWL----NVSVKPPI----PKVRRKEVKALDESQIQKV 128

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH--LQNNIFSIKTQKTGTIITVELPDG 240
            +   + ++ +L    LL +GLR ++     V+   L+NN+  ++  K G    V   D 
Sbjct: 129 LN-TCKRTKDKLIIRLLLDTGLRANELLSVLVKDVDLENNMIRVRNTKNGEERVVFFTDE 187

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSAHGVRKFSATISA 298
             +LL     GK+      D++  + T  +++ K K    K  +    H +R   AT+S 
Sbjct: 188 TKQLLRKYMKGKKL-----DEKLFDITYDALYRKLKRLGNKVEIELRPHILRHTFATLSL 242

Query: 299 DAGATAHELMATYGWKTVDQAETYT 323
             G     L    G K +   + YT
Sbjct: 243 KRGINVITLQKLLGHKDIKTTQIYT 267


>gi|289650500|ref|ZP_06481843.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. aesculi str. 2250]
          Length = 279

 Score = 42.4 bits (98), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 45/207 (21%), Positives = 85/207 (41%), Gaps = 27/207 (13%)

Query: 99  FDQIIRKSGDFDYRKITTKHI---RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI 155
           F   I  +   D+R++T  H+   R+ +E R    ++  + L ++  LF   +    +A 
Sbjct: 53  FSAFIGLASADDFRQVTRSHVLAWRANLEQRGLAGATIRRKLAALASLFDHLLESNAIAG 112

Query: 156 -NPCLSVERPK-RKTEGIRPWTKEDMQQFKSFWS-------EGSQPRLAFEFLLYSGLRC 206
            NP   V+RPK    EG  P   +   Q K+          +G + R     LLY GLR 
Sbjct: 113 GNPVHGVKRPKIESNEGKTPALGD--HQAKALLEAPDESTLKGLRDRAMLAVLLYHGLRR 170

Query: 207 SDSCRAGVQHLQN--NIFSIKTQKTGTIITVELPDGFMKLLAMTPI--GKETFFINNDKQ 262
            ++ +  V  +Q    I  +K    G         G ++ L + P+  G+  +++     
Sbjct: 171 EEAAQLQVSDIQERRGIQHLKIHGKG---------GKVRYLPLHPVAAGRIHWYLERSGH 221

Query: 263 KMNATQFSIWFKAKATKAGVNKSAHGV 289
            +   +  ++   +    G + SA+G+
Sbjct: 222 HLGDKKVPLFISLRGKSTGASISANGI 248


>gi|323343537|ref|ZP_08083764.1| integrase/recombinase XerD [Prevotella oralis ATCC 33269]
 gi|323095356|gb|EFZ37930.1| integrase/recombinase XerD [Prevotella oralis ATCC 33269]
          Length = 317

 Score = 42.4 bits (98), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 50/223 (22%), Positives = 88/223 (39%), Gaps = 19/223 (8%)

Query: 120 RSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK--RKTEGIRPWT 175
           R  V+  +H   P++  + L+ +R  +++ V   Y+A +P   +E P        +    
Sbjct: 63  RFAVQIHEHGVGPATQARILSGVRSFYRFLVLDGYIAADPTELLESPHIGEHLPEVLSAA 122

Query: 176 KEDMQQFKSFWS--EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-- 231
           + DM +     S  EG + +   E L   GLR S+     +  L      ++    G   
Sbjct: 123 EVDMLEDSIDLSKWEGQRNKAIIEMLFSCGLRVSELVNLKLSDLYIEEEYVRVLGKGDKE 182

Query: 232 -IITV------ELPDGFM--KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
            ++ +      EL   F+   L+ + P   +  F+N     +  T   I  K +A  AG+
Sbjct: 183 RLVPISPKAIKELKLWFIDRNLMQIKPGEIDFVFLNRRGSHLTRTMILIMIKRQAEAAGI 242

Query: 283 NK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
            K  S H +R   AT     GA    +    G +++   E YT
Sbjct: 243 RKTISPHTLRHSFATELLKGGADLRAIQEMLGHESIGTTEIYT 285


>gi|295110676|emb|CBL24629.1| Site-specific recombinase XerD [Ruminococcus obeum A2-162]
          Length = 400

 Score = 42.4 bits (98), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 8/97 (8%)

Query: 97  SYFDQIIRKS-GDFDYRKITTKHIRSGVESR-----KHTPSSAIQFLTSMRVLFKWAVRQ 150
           SY++  ++ S G    + I T H++  +         H   S I+F+ S   +   AV  
Sbjct: 94  SYYNSRVKNSIGKMYLQDIKTYHVQKFLNDLIDSGLAHGTVSNIRFMLSD--MLDKAVLS 151

Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           EY+  NPC+ VE PK   +  R  TKE+ ++F +F S
Sbjct: 152 EYIRKNPCIGVEMPKEVKKERRVLTKEEQEKFFTFAS 188


>gi|192362212|ref|YP_001983742.1| tyrosine recombinase XerC [Cellvibrio japonicus Ueda107]
 gi|190688377|gb|ACE86055.1| tyrosine recombinase XerC [Cellvibrio japonicus Ueda107]
          Length = 313

 Score = 42.4 bits (98), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 38/204 (18%), Positives = 85/204 (41%), Gaps = 15/204 (7%)

Query: 99  FDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQ-FLTSMRVLFKWAVRQEYVAI 155
           F +  R +G     ++  + +R  V S  R+     ++Q +L+S+R  F++A+R  +++I
Sbjct: 40  FQRYCRDAGIQQLTEVDARAVRMAVASLHRQGLAGKSLQRWLSSLRGFFQYAIRHHWMSI 99

Query: 156 NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG---SQPRLAFEFLLYSGLRCSD--SC 210
           NP   +  PK   +  +    +   QF +   +     + R   E +  SGLR ++  S 
Sbjct: 100 NPADGIAAPKTPKKLPKTLDVDQTAQFVAVEGDDFIHKRDRALLELIYSSGLRLAEVTSL 159

Query: 211 RAGVQHLQNNIFSI-------KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK 263
             G     + + ++       +T   G++    L D   +     P  +   FI    ++
Sbjct: 160 NLGDIDWGDAMVTVTGKGSKTRTLPVGSVAIAALKDWLSQREQYAPASEPALFITQRGKR 219

Query: 264 MNATQFSIWFKAKATKAGVNKSAH 287
           ++     +  +  + + G++   H
Sbjct: 220 ISHRAVQLRLQQLSVQQGMDNPVH 243


>gi|114707207|ref|ZP_01440105.1| hypothetical protein FP2506_04851 [Fulvimarina pelagi HTCC2506]
 gi|114537403|gb|EAU40529.1| hypothetical protein FP2506_04851 [Fulvimarina pelagi HTCC2506]
          Length = 96

 Score = 42.0 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 1/57 (1%)

Query: 273 FKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           F+    +AG+N  SA  +RK  A I+A  GA   +L A +GW+  ++A  YT+ A +
Sbjct: 17  FRKSCNEAGLNHCSARRLRKAGAAIAAKNGANEEDLKALFGWENANEANLYTRKASQ 73


>gi|84687247|ref|ZP_01015127.1| Possible integrase/recombinase [Maritimibacter alkaliphilus
           HTCC2654]
 gi|84664680|gb|EAQ11164.1| Possible integrase/recombinase [Rhodobacterales bacterium HTCC2654]
          Length = 145

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 32/56 (57%)

Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338
           N+S H VR+  A + A+ GA+ +E+M T G      A  YT  ADR  +G+  SR+
Sbjct: 88  NRSQHVVRRGVAQLLANEGASEYEIMTTLGHSDPRTARIYTDKADRAGMGVSASRK 143


>gi|289628758|ref|ZP_06461712.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. aesculi str. NCPPB3681]
 gi|330870488|gb|EGH05197.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. aesculi str. 0893_23]
          Length = 320

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 45/207 (21%), Positives = 85/207 (41%), Gaps = 27/207 (13%)

Query: 99  FDQIIRKSGDFDYRKITTKHI---RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI 155
           F   I  +   D+R++T  H+   R+ +E R    ++  + L ++  LF   +    +A 
Sbjct: 52  FSAFIGLASADDFRQVTRSHVLAWRANLEQRGLAGATIRRKLAALASLFDHLLESNAIAG 111

Query: 156 -NPCLSVERPK-RKTEGIRPWTKEDMQQFKSFWS-------EGSQPRLAFEFLLYSGLRC 206
            NP   V+RPK    EG  P   +   Q K+          +G + R     LLY GLR 
Sbjct: 112 GNPVHGVKRPKIESNEGKTPALGD--HQAKALLEAPDESTLKGLRDRAMLAVLLYHGLRR 169

Query: 207 SDSCRAGVQHLQN--NIFSIKTQKTGTIITVELPDGFMKLLAMTPI--GKETFFINNDKQ 262
            ++ +  V  +Q    I  +K    G         G ++ L + P+  G+  +++     
Sbjct: 170 EEAAQLQVSDIQERRGIQHLKIHGKG---------GKVRYLPLHPVAAGRIHWYLERSGH 220

Query: 263 KMNATQFSIWFKAKATKAGVNKSAHGV 289
            +   +  ++   +    G + SA+G+
Sbjct: 221 HLGDKKVPLFISLRGKSTGASISANGI 247


>gi|260910520|ref|ZP_05917188.1| integrase/recombinase XerD [Prevotella sp. oral taxon 472 str.
           F0295]
 gi|260635362|gb|EEX53384.1| integrase/recombinase XerD [Prevotella sp. oral taxon 472 str.
           F0295]
          Length = 304

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 49/221 (22%), Positives = 88/221 (39%), Gaps = 19/221 (8%)

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
           + +  ++ TP S  + L+ +R  FK+ +   ++  +P   +  P  +       +  ++ 
Sbjct: 64  ASLHDQRITPRSQARILSGVRSFFKFLLLDGFIDADPTELLVSPHVRNALPDVLSTAEVD 123

Query: 181 QFK-----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---I 232
           + +     S W EG + R   E L   GLR S+     + +L      ++    G    +
Sbjct: 124 RLEASIDLSKW-EGQRNRAIIEVLFSCGLRVSELVNLKLSNLYVEEKFVRVTGKGDKERL 182

Query: 233 ITV------ELPDGFMKLLAM--TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284
           + +      EL   F    AM   P  ++  F+N     +  T   I  K +A  AG+ K
Sbjct: 183 VPISSRALDELNAWFADRNAMRIKPGEEDYVFLNRRGAHLTRTMILIMIKRQAVAAGITK 242

Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
             S H +R   AT   + GA    + A  G + +   E YT
Sbjct: 243 TISPHTLRHSFATALLEGGADLIAIQAMMGHEDIATTEIYT 283


>gi|225572145|ref|ZP_03781009.1| hypothetical protein RUMHYD_00439 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040317|gb|EEG50563.1| hypothetical protein RUMHYD_00439 [Blautia hydrogenotrophica DSM
           10507]
          Length = 351

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 42/202 (20%), Positives = 85/202 (42%), Gaps = 41/202 (20%)

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ---------------Q 181
           ++S+R  + +  ++E +  NP L V+ PK   + I     +++                Q
Sbjct: 116 MSSLRSFYAYYYKREMIETNPTLLVDMPKLHQKAITRLDADEVALLLDYIEHAGDELTGQ 175

Query: 182 FKSFWSEGSQPRLAF-EFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITV--- 235
            K ++ +  +  LA    LL +G+R S+     V+ L  +NN   +  +  G +I     
Sbjct: 176 KKVYYEKTKERDLALVTLLLGTGIRVSECVGLDVEDLDFKNNGIKVTRKGGGEMIVYFGS 235

Query: 236 ELPDGFMKLLA----MTPI-GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVR 290
           E+     + L     +TP+ G E                ++++  +  + GV    + V+
Sbjct: 236 EVETALRRYLKARDNITPVVGHE---------------HALFYSTQRKRLGVQAVENLVK 280

Query: 291 KFSATISADAGATAHELMATYG 312
           K+++ I+     T H+L +TYG
Sbjct: 281 KYASQITTTKKITPHKLRSTYG 302


>gi|331087780|ref|ZP_08336706.1| hypothetical protein HMPREF1025_00289 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330409761|gb|EGG89197.1| hypothetical protein HMPREF1025_00289 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 400

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 8/97 (8%)

Query: 97  SYFDQIIRKS-GDFDYRKITTKHIRSGVESR-----KHTPSSAIQFLTSMRVLFKWAVRQ 150
           SY++  ++ S G    + I T H++  +         H   S I+F+ S   +   AV  
Sbjct: 94  SYYNSRVKNSIGKMYLQDIKTYHVQKFLNDLIDSGLAHGTVSNIRFMLSD--MLDKAVLS 151

Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           EY+  NPC+ VE PK   +  R  TKE+ ++F +F S
Sbjct: 152 EYIRKNPCIGVEMPKEVKKERRVLTKEEQEKFFTFAS 188


>gi|260893196|ref|YP_003239293.1| integrase family protein [Ammonifex degensii KC4]
 gi|260865337|gb|ACX52443.1| integrase family protein [Ammonifex degensii KC4]
          Length = 391

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 33/140 (23%), Positives = 68/140 (48%), Gaps = 12/140 (8%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE--SRKHTPSS 132
           +  +R+S    +LA N R +  ++   I    G  +  ++T   +   +   + ++ PS+
Sbjct: 74  VEAHRRSWRPNTLA-NKRTAARAWGRLI----GHLEVERLTPADVELALARLAEEYAPST 128

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
           A +  +S R   +WA +++ +  +P   V  P+ +T+ I PWT E+  +F  +  E ++ 
Sbjct: 129 AKEVFSSFRQALRWARKRKLLHHDPTEGVPAPRGETQEITPWTGEEAARFLEY-LEKARM 187

Query: 193 RLA----FEFLLYSGLRCSD 208
           R A    F   L +G+R  +
Sbjct: 188 RKAYKAFFRLALATGMRLGE 207


>gi|229075069|ref|ZP_04208071.1| DNA integration/recombination/invertion protein [Bacillus cereus
           Rock4-18]
 gi|228708126|gb|EEL60297.1| DNA integration/recombination/invertion protein [Bacillus cereus
           Rock4-18]
          Length = 369

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 26/120 (21%), Positives = 58/120 (48%), Gaps = 5/120 (4%)

Query: 93  ISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL---FKWAV 148
           + + ++ +Q +I   G     K+   HI+   ++      +    L + R+L      AV
Sbjct: 86  VGYRAFINQHVIPSIGMVALHKLNVMHIQKCYKTAMDKGIANNSILLTHRILKSALNLAV 145

Query: 149 RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD 208
           +Q  ++ NP    E PK++   I+ WT+E++++F    S+ S+  + +   + +G+R  +
Sbjct: 146 KQNIISQNPAAFAEIPKKERTSIQTWTEEEVKKF-LLHSQESRYHIGYLLAITTGMRMGE 204


>gi|168778124|ref|ZP_02803131.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC4196]
 gi|187766816|gb|EDU30660.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC4196]
          Length = 359

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 44/197 (22%), Positives = 79/197 (40%), Gaps = 6/197 (3%)

Query: 36  PYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISF 95
           P   ES  + A    L     K E   + R +  T   L  ++  SA++  L+  ++  +
Sbjct: 27  PTSRESVTLTAIEDGLAALWKKYEETVNHRDRAMTFGRLWEKFLASAYYSELSPRTQKDY 86

Query: 96  ESYFDQIIRKSGDFDYRKITTKHIRSGVESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVA 154
             +  +++   G      +  +HIR  ++ R + + + A    +SM  ++ W   + YV 
Sbjct: 87  LQHQKKLLAVFGKVLADSVKPEHIRRYMDKRGEQSKTQANHEKSSMSRVYSWGYERGYVK 146

Query: 155 INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR-LAFEFLLYSGLRCSDSCRAG 213
            NPC  V + K K        KE    +++  S    P  +A E       R SD     
Sbjct: 147 ANPCAGVSKFKAKNRERYVTDKE----YQAVLSVAPLPVFIAMEIAYLCAARVSDVLSLK 202

Query: 214 VQHLQNNIFSIKTQKTG 230
            + + N+   I+  KTG
Sbjct: 203 WEQIGNDGIFIQQGKTG 219


>gi|324114504|gb|EGC08473.1| bacteriophage lambda integrase domain-containing protein
           [Escherichia fergusonii B253]
          Length = 357

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 47/220 (21%), Positives = 88/220 (40%), Gaps = 16/220 (7%)

Query: 93  ISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQ 150
           + + S    I RK  D     I+TK + + + +   +   +SA    +++  +F+ A+ +
Sbjct: 98  LDYASKIRAIRRKLPDKPLADISTKEVAAMLNTYVAEGKAASAKLIRSTLVDVFREAIAE 157

Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210
            +VA NP  +    K +    R    E ++ + +        RLA +  + +G R  D C
Sbjct: 158 GHVATNPVTATRTAKSEVRRSRLTANEYVEIYHAAEPLPIWLRLAMDLAVVTGQRVGDLC 217

Query: 211 RAGVQHLQNNIFSIKTQKTGTIITVELP---DGFMKLLAMT------PIGKETFFINNDK 261
           R     + +N   I+  KTG  + + L    D     LA T        G ET   +   
Sbjct: 218 RMKWSDINDNHLHIEQGKTGAKLAIPLTLRIDALNISLADTLQKCRKASGSETIIASTHH 277

Query: 262 QKMNATQFSIWFKAKATKAGVNKSA-----HGVRKFSATI 296
           + ++    S +F      +G++        H +R  SA +
Sbjct: 278 EPLSPKTVSKYFTKARNASGLSFDGDPPTFHELRSLSARL 317


>gi|195562187|gb|ACG50169.1| putative integrase [Escherichia coli]
          Length = 329

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 38/176 (21%), Positives = 80/176 (45%), Gaps = 8/176 (4%)

Query: 59  EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH 118
           E +   RK   T   L  ++  S  +  LA  ++  + ++   ++   G+ + + I  +H
Sbjct: 49  EKVIEGRKNILTFSQLWKKFLNSTDYADLAPRTQKDYLAHEKYLLAVFGEAEAKSIKPEH 108

Query: 119 IRSGVESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER-PKRKTEGIRPWTK 176
           +R  +++R K +   A    +SM  +++W  ++ +V  NPC+ V++ PK + +  R  T 
Sbjct: 109 VRRYMDARGKKSRVQANHEHSSMSRVYRWGYQRGFVPGNPCVGVDKYPKPQRD--RYITD 166

Query: 177 EDMQQFKSFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
           E   ++ + +   + P + A E       R SD  +     + +    I+  KTG 
Sbjct: 167 E---EYLAIYDCATDPVKAAMEIAYLCAARVSDVLKMDWNQIMDKGIFIQQGKTGV 219


>gi|153815865|ref|ZP_01968533.1| hypothetical protein RUMTOR_02110 [Ruminococcus torques ATCC 27756]
 gi|145846890|gb|EDK23808.1| hypothetical protein RUMTOR_02110 [Ruminococcus torques ATCC 27756]
          Length = 400

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 58/118 (49%), Gaps = 9/118 (7%)

Query: 97  SYFDQIIRKS-GDFDYRKITTKHIRSGVESR-----KHTPSSAIQFLTSMRVLFKWAVRQ 150
           SY++  ++ S G    + I T H++  +         H   S I+F+ S   +F  AV  
Sbjct: 94  SYYNARVKNSIGKMYLQDIKTYHVQKFINELIDSGLAHGTVSNIRFMLSD--MFDKAVLS 151

Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD 208
           EY+  NPC++VE P +  +  R  T+E+ ++F +F S      +  +F + +G R  +
Sbjct: 152 EYIRKNPCIAVEMPPKVKKERRVLTREEQKKFFTFASSYIHINV-LKFAVTTGCRIGE 208


>gi|188496064|ref|ZP_03003334.1| integrase [Escherichia coli 53638]
 gi|188491263|gb|EDU66366.1| integrase [Escherichia coli 53638]
          Length = 357

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 34/147 (23%), Positives = 64/147 (43%), Gaps = 2/147 (1%)

Query: 93  ISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQ 150
           + + S    I RK  D     I+TK + + + +   +   +SA    +++  +F+ A+ +
Sbjct: 98  LDYASKIRAIRRKLPDKPLNDISTKEVAAMLNTYVAEGKAASAKLIRSTLVDVFREAIAE 157

Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210
            +VA NP  +    K +    R    E ++ + +        RLA +  + +G R  D C
Sbjct: 158 GHVATNPVTATRTAKSEVRRSRLTANEYIEIYHAAEPLPIWLRLAMDLAVITGQRVGDLC 217

Query: 211 RAGVQHLQNNIFSIKTQKTGTIITVEL 237
           R     + +N   I+  KTG  I + L
Sbjct: 218 RMKWSDINDNHLHIEQGKTGAKIAIPL 244


>gi|229579624|ref|YP_002838023.1| integrase family protein [Sulfolobus islandicus Y.G.57.14]
 gi|228010339|gb|ACP46101.1| integrase family protein [Sulfolobus islandicus Y.G.57.14]
          Length = 291

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 45/205 (21%), Positives = 87/205 (42%), Gaps = 18/205 (8%)

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           VE R+    +   ++ ++R   KW      V++ P +    PK + + ++   +  +Q+ 
Sbjct: 77  VEKRRAKSVTIRYYIIAVRRFLKWL----NVSVKPPI----PKVRGKEVKALDESQIQKV 128

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH--LQNNIFSIKTQKTGTIITVELPDG 240
            +   + ++ +L    LL +GLR ++     V+   L+NN+  ++  K G    V   D 
Sbjct: 129 LN-TCKRTKDKLIIRLLLDTGLRANELLSVLVKDVDLENNMIRVRNTKNGEERVVFFTDE 187

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSAHGVRKFSATISA 298
             +LL     GK+      D++  + T  +++ K K    K  +    H +R   AT+S 
Sbjct: 188 TKQLLRKYMKGKKL-----DEKLFDITYDALYRKLKRLGNKVEIELRPHILRHTFATLSL 242

Query: 299 DAGATAHELMATYGWKTVDQAETYT 323
             G     L    G K +   + YT
Sbjct: 243 KRGINVITLQKLLGHKDIKTTQIYT 267


>gi|168752738|ref|ZP_02777760.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC4113]
 gi|168757666|ref|ZP_02782673.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC4401]
 gi|168770287|ref|ZP_02795294.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC4486]
 gi|168784061|ref|ZP_02809068.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC4076]
 gi|195940083|ref|ZP_03085465.1| putative integrase [Escherichia coli O157:H7 str. EC4024]
 gi|208810674|ref|ZP_03252550.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC4206]
 gi|208816586|ref|ZP_03257706.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC4045]
 gi|209399988|ref|YP_002271143.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC4115]
 gi|254793679|ref|YP_003078516.1| putative integrase for prophage CP-933U [Escherichia coli O157:H7
           str. TW14359]
 gi|188013544|gb|EDU51666.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC4113]
 gi|188998687|gb|EDU67673.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC4076]
 gi|189355394|gb|EDU73813.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC4401]
 gi|189360802|gb|EDU79221.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC4486]
 gi|208725190|gb|EDZ74897.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC4206]
 gi|208730929|gb|EDZ79618.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC4045]
 gi|209161388|gb|ACI38821.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC4115]
 gi|254593079|gb|ACT72440.1| putative integrase for prophage CP-933U [Escherichia coli O157:H7
           str. TW14359]
          Length = 359

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 44/197 (22%), Positives = 79/197 (40%), Gaps = 6/197 (3%)

Query: 36  PYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISF 95
           P   ES  + A    L     K E   + R +  T   L  ++  SA++  L+  ++  +
Sbjct: 27  PTSRESVTLTAIEDGLAALWKKYEETVNHRDRAMTFGRLWEKFLASAYYSELSPRTQKDY 86

Query: 96  ESYFDQIIRKSGDFDYRKITTKHIRSGVESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVA 154
             +  +++   G      +  +HIR  ++ R + + + A    +SM  ++ W   + YV 
Sbjct: 87  LQHQKKLLAVFGKVLADSVKPEHIRRYMDKRGEQSKTQANHEKSSMSRVYSWGYERGYVK 146

Query: 155 INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR-LAFEFLLYSGLRCSDSCRAG 213
            NPC  V + K K        KE    +++  S    P  +A E       R SD     
Sbjct: 147 ANPCAGVSKFKAKNRERYVTDKE----YQAVLSVAPLPVFIAMEIAYLCAARVSDVLSLK 202

Query: 214 VQHLQNNIFSIKTQKTG 230
            + + N+   I+  KTG
Sbjct: 203 WEQIGNDGIFIQQGKTG 219


>gi|237721804|ref|ZP_04552285.1| integrase [Bacteroides sp. 2_2_4]
 gi|299144803|ref|ZP_07037871.1| tyrosine recombinase XerD [Bacteroides sp. 3_1_23]
 gi|229448673|gb|EEO54464.1| integrase [Bacteroides sp. 2_2_4]
 gi|298515294|gb|EFI39175.1| tyrosine recombinase XerD [Bacteroides sp. 3_1_23]
          Length = 319

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 59/288 (20%), Positives = 116/288 (40%), Gaps = 26/288 (9%)

Query: 61  INSPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQI-----IRKSGDFDYRKI 114
           IN  + K    + +I +Y++      SL++N+  ++ +  D++     +      D    
Sbjct: 3   INEKKHKKEQQELIIRKYQQYLKLEKSLSLNTLDAYLTDLDKLMSFLTLEGINVLDVCLS 62

Query: 115 TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
             +   +G+      P S  + L+ ++  F++ + + Y+  +P   +E PK   +     
Sbjct: 63  DLQRFAAGLHDIGIHPRSQARILSGIKSFFRFLILENYLEADPSELLEGPKIGFKLPEVL 122

Query: 175 TKEDMQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
           T E++ +  S      +EG + R   E L   GLR S+     +  L  +   IK +  G
Sbjct: 123 TVEEIDRIISAVDRSKAEGQRNRAILETLYSCGLRVSELITLKLSDLYFDEGFIKVEGKG 182

Query: 231 T---IITVELPDGFMKLLAMTPI--------GKETFFINNDKQKMNATQFSIW--FKAKA 277
           +   ++ +  P    ++    P         G E F   + ++    ++  I+   K  A
Sbjct: 183 SKQRLVPIS-PRAINEIKLYIPDRNQIEVKKGHEDFVFVSQRRGKGLSRIMIFHMIKELA 241

Query: 278 TKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
            KAG+ K  S H  R   AT   + GA    +    G +++   E YT
Sbjct: 242 EKAGITKNISPHTFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYT 289


>gi|296136669|ref|YP_003643911.1| integrase family protein [Thiomonas intermedia K12]
 gi|295796791|gb|ADG31581.1| integrase family protein [Thiomonas intermedia K12]
          Length = 336

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 59/122 (48%), Gaps = 14/122 (11%)

Query: 48  MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGS-LAVNSRISFESYFDQIIRKS 106
           M+AL GS P    +NSP     TL+ L ++Y   A     LA  + +++    D +++++
Sbjct: 1   MAAL-GSLP----LNSP-----TLRQLAADYLAHAQTERRLAEGTLVNYRRDLDDLLQRA 50

Query: 107 GDFDYRKITTKHIR---SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163
                 +I + HIR   + + +   +P +    L++ R  F+W  R  +VA NP   V  
Sbjct: 51  ETLGAAQIESVHIRRWAAQLHAGGMSPRAIAARLSAWRSFFRWMGRLGFVAANPVQDVRA 110

Query: 164 PK 165
           PK
Sbjct: 111 PK 112


>gi|206599577|ref|YP_002242016.1| gp33 [Mycobacterium phage Brujita]
 gi|206282726|gb|ACI06247.1| gp33 [Mycobacterium phage Brujita]
 gi|302858513|gb|ADL71260.1| gp33 [Mycobacterium phage island3]
          Length = 297

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 48/201 (23%), Positives = 83/201 (41%), Gaps = 13/201 (6%)

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195
           +  ++   F W  +Q +   NP + + RPKR     RP +  D+Q+  +     +  R  
Sbjct: 63  YYGALSAWFLWLQQQGHRHDNPMVMIGRPKRPKSVPRPVSNLDVQRLLAV---RAHKRTK 119

Query: 196 FEFLL--YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII-TVELPDGFMKLLAMTPIGK 252
              LL  + GLR  +  +   +HL     ++     G +  T+ L    +++    P  +
Sbjct: 120 AMILLAAFQGLRVHEIAQIKGEHLDLIERTMTVTGKGNVTATLPLHHRVVEIAYQMP-RR 178

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGA---TAHELMA 309
             +F   D+        S   K    +AGV  SAH +R +  T   +AG    T  ELM 
Sbjct: 179 GHWFPGPDRGHQRRESVSGTIKEAMIRAGVVGSAHCLRHWFGTALLEAGVDLRTVQELMR 238

Query: 310 TYGWKTVDQAETYTKGADRIR 330
               +++   E YT+  D+ R
Sbjct: 239 H---QSLTSTEIYTRVTDQRR 256


>gi|9625463|ref|NP_039697.1| observed 41.8Kd protein [Mycobacterium phage L5]
 gi|465416|sp|P22884|VINT_BPML5 RecName: Full=Integrase
 gi|579129|emb|CAA79409.1| gene 33 [Mycobacterium phage L5]
          Length = 371

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 54/222 (24%), Positives = 89/222 (40%), Gaps = 27/222 (12%)

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM-----Q 180
           RKH P++       +R +   AV  + +A NPC  +E+       +   T E++     +
Sbjct: 130 RKH-PTARRHAYNVLRAVMNTAVEDKLIAENPC-RIEQKAADERDVEALTPEELDIVAAE 187

Query: 181 QFKSF--------WSE---GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQ 227
            F+ +        W+    G    L  + ++  G+      R G   + N I   + KT 
Sbjct: 188 IFEHYRIAAYILAWTSLRFGELIELRRKDIVDDGMTMKLRVRRGASRVGNKIVVGNAKTV 247

Query: 228 KTGTIITV-----ELPDGFMKLLAMTPIGKETFFINNDK-QKMNATQFSIWFKAKATKAG 281
           ++   +TV     E+    MK       G E F +   +  +++ + F+   K    K G
Sbjct: 248 RSKRPVTVPPHVAEMIRAHMKDRTKMNKGPEAFLVTTTQGNRLSKSAFTKSLKRGYAKIG 307

Query: 282 VNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
             +   H +R   AT +A AGAT  ELMA  G  T   A  Y
Sbjct: 308 RPELRIHDLRAVGATFAAQAGATTKELMARLGHTTPRMAMKY 349


>gi|126461524|ref|YP_001042638.1| putative tyrosine recombinase [Rhodobacter sphaeroides ATCC 17029]
 gi|126103188|gb|ABN75866.1| putative tyrosine recombinase [Rhodobacter sphaeroides ATCC 17029]
          Length = 101

 Score = 42.0 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 38/63 (60%), Gaps = 1/63 (1%)

Query: 270 SIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           S WF A A +AG+  ++AHG+RK+     A+ GA+   + +  G  T+ + + YT+ ADR
Sbjct: 25  SQWFSAAAREAGLEGRTAHGLRKYRMNALAEHGASVLVMQSWVGHTTLLEVQEYTRRADR 84

Query: 329 IRL 331
            R+
Sbjct: 85  RRV 87


>gi|237742399|ref|ZP_04572880.1| DNA integration/recombination/invertion protein [Fusobacterium sp.
           4_1_13]
 gi|229430047|gb|EEO40259.1| DNA integration/recombination/invertion protein [Fusobacterium sp.
           4_1_13]
          Length = 416

 Score = 42.0 bits (97), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 31/123 (25%), Positives = 59/123 (47%), Gaps = 10/123 (8%)

Query: 91  SRISFESYF---DQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWA 147
           +R S   YF   ++ +++  DFD      K+    +  R  +P++ + +   + ++FK+A
Sbjct: 125 ARCSLIPYFYRENKKLKEIEDFD----IEKYYYHELNYRNISPNTVLHYHYLLSLVFKYA 180

Query: 148 VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL--YSGLR 205
           +R + +  NP  SVE+PK+K      +  E++           +  L F  L+  Y GLR
Sbjct: 181 LRHKIITRNPLDSVEKPKKKKYVAEVYNAEEINILLDLLKR-EEENLYFGVLMAAYFGLR 239

Query: 206 CSD 208
            S+
Sbjct: 240 RSE 242


>gi|256821403|ref|YP_003145366.1| tyrosine recombinase XerC [Kangiella koreensis DSM 16069]
 gi|256794942|gb|ACV25598.1| tyrosine recombinase XerC [Kangiella koreensis DSM 16069]
          Length = 299

 Score = 42.0 bits (97), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 57/273 (20%), Positives = 112/273 (41%), Gaps = 25/273 (9%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-- 128
           L  L+ E R S H  +   N R   E         +G  ++++ITT+ IR  +  R    
Sbjct: 9   LNRLLHEKRYSEHTVN---NYRRQLERLL-AFCHDAGYSNWQQITTQDIRMLIAKRHRQG 64

Query: 129 -TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            +PSS+   L++MR   ++ + ++ + +NP + V  PK+     +    + +  F     
Sbjct: 65  ASPSSSALQLSAMRRFLEFLLSEKKITVNPAVGVRGPKKAKRLPKNIDVDSLNHFLDQMP 124

Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG--F 241
           E      + +   E L  SG+R ++     +  L  +  S++    G  +  E+P G   
Sbjct: 125 EDEPIEVRDKAMMELLYSSGIRLAELSAMDIDDLSFSDQSLRVLGKGNKVR-EVPFGNSS 183

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKAT---------KAGVNK--SAHGVR 290
            K+L++    +  F  N+D++ +  +Q       +A          K G+N     H +R
Sbjct: 184 KKVLSLWLKERNNFAKNSDEKALFLSQQGNRLTNRAIQQRLAHWGKKLGLNDRLHPHKLR 243

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYT 323
              AT   ++ +    +    G  ++   + YT
Sbjct: 244 HSCATHVLESSSDLRAVQELLGHASISTTQIYT 276


>gi|304382767|ref|ZP_07365251.1| tyrosine recombinase XerD [Prevotella marshii DSM 16973]
 gi|304336086|gb|EFM02332.1| tyrosine recombinase XerD [Prevotella marshii DSM 16973]
          Length = 315

 Score = 42.0 bits (97), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 47/227 (20%), Positives = 88/227 (38%), Gaps = 53/227 (23%)

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS---- 187
           S  + L+ +R  +++     Y+  +P   +E P+  T      + E++ + ++       
Sbjct: 75  SQARVLSGVRSFYRFLQLDGYMESDPSELLESPQIGTHLPEVLSTEEVDRLENSLDLSKP 134

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA- 246
           EG + R   E L   GLR ++            + S++      +  + L +GF+++L  
Sbjct: 135 EGQRNRAIIEVLFSCGLRVTE------------LVSLR------LSNLYLDEGFIRVLGK 176

Query: 247 -----MTPI----------------------GKETF-FINNDKQKMNATQFSIWFKAKAT 278
                  PI                      G+E + F+N     +  T   I  K +AT
Sbjct: 177 GRKERFVPISPRAIKELKLWFYDRNELKIRAGEEDYVFLNRRGVHLTRTMILIMIKRQAT 236

Query: 279 KAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           +AG+ K  S H +R   AT   + GA    +    G +++   E YT
Sbjct: 237 EAGIQKTISPHTLRHSFATALLEGGADLRAIQVMLGHESISTTEIYT 283


>gi|325299547|ref|YP_004259464.1| Tyrosine recombinase xerC [Bacteroides salanitronis DSM 18170]
 gi|324319100|gb|ADY36991.1| Tyrosine recombinase xerC [Bacteroides salanitronis DSM 18170]
          Length = 316

 Score = 42.0 bits (97), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 50/211 (23%), Positives = 84/211 (39%), Gaps = 17/211 (8%)

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE- 188
           P S  + L+ +R  F++    +Y+  +P   +E P+         T E++        E 
Sbjct: 82  PRSQARILSGIRSFFRFLTLDDYIRQDPSELLESPQIGKHLPDVLTVEEIDALIGAIDET 141

Query: 189 ---GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---IITV------E 236
              G + R   E L   GLR S+ C   +  L  +   IK +  G+   ++ +      E
Sbjct: 142 TPEGQRNRAILETLYSCGLRVSELCNLKLSDLYLDEGFIKVEGKGSKQRLVPISPRAVNE 201

Query: 237 LPDGFMKL-LAMTPIGKETF-FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292
           L + F +   A    G E F FI+   + ++        K  A + G+ K  S H  R  
Sbjct: 202 LKNYFTERGYAKIKPGYEDFVFISRFGKNISRIMVFHIIKELAERIGLKKTISPHTFRHS 261

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYT 323
            AT   + GA    + A  G +++   E YT
Sbjct: 262 FATHLLEGGANLRAIQAMLGHESIGTTEIYT 292


>gi|16801135|ref|NP_471403.1| hypothetical protein lin2069 [Listeria innocua Clip11262]
 gi|34222947|sp|Q92A53|XERD_LISIN RecName: Full=Tyrosine recombinase xerD
 gi|16414570|emb|CAC97299.1| lin2069 [Listeria innocua Clip11262]
 gi|313618111|gb|EFR90213.1| tyrosine recombinase XerD [Listeria innocua FSL S4-378]
 gi|313623100|gb|EFR93374.1| tyrosine recombinase XerD [Listeria innocua FSL J1-023]
          Length = 297

 Score = 42.0 bits (97), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 46/216 (21%), Positives = 89/216 (41%), Gaps = 24/216 (11%)

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           +P S  +++ S+R  F + +    ++ +P + +E PK+     +    +D+++  S  S+
Sbjct: 67  SPRSVARYIASLRSFFHYLMHDGKMSHDPMIQIETPKQAQSLPKVLNLDDVEKLLS-SSD 125

Query: 189 GSQP-----RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG------------- 230
            S P     +   E L  +GLR ++  +  +  L   +  I+T   G             
Sbjct: 126 TSTPLGLRDQAMLEILYATGLRVTELVKLKMDDLHLQMGFIQTIGKGDKERIIPLGKTAT 185

Query: 231 TIITVELPDGFMKLLAMTPIGKETF-FINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287
           T++   L +   KL    P  +  F F+N+  Q +    F    K  A ++G+ K  + H
Sbjct: 186 TVLEQYLEEARPKL--RRPKYRNDFVFLNHHGQGLTRQGFWKILKGIAKESGIEKPITPH 243

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
            +R   AT   + GA    +    G   +   + YT
Sbjct: 244 TLRHSFATHLLENGADLRSVQELLGHADISTTQIYT 279


>gi|317051479|ref|YP_004112595.1| integrase family protein [Desulfurispirillum indicum S5]
 gi|316946563|gb|ADU66039.1| integrase family protein [Desulfurispirillum indicum S5]
          Length = 303

 Score = 42.0 bits (97), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 62/254 (24%), Positives = 101/254 (39%), Gaps = 45/254 (17%)

Query: 103 IRKSGDFDYRKITTKHIRSGVESR-----KHTPSSAIQFLTSMRVLFKWAVRQEYVAINP 157
           + + G  D++++T   +R+ +  R     KHT S+    L +++  F++ VR+E    NP
Sbjct: 40  LYEQGIHDWQEVTHLELRAYLYQRAGNLSKHTFSTV---LATLKSFFRFTVREEITHANP 96

Query: 158 CLSVERPKRKTEGIRPW------TKEDMQQFKSFWSEGSQPR---LAFEFLLYSGLRCSD 208
              +  P+R  +   P         E +QQ  S     +  R   + F FL+ +G+R S+
Sbjct: 97  TTKLSFPRRSPQDKLPQYVNSEAQSEFLQQLLSLKRNFTNDRNRSIIFTFLM-TGMRTSE 155

Query: 209 SC-------RAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM--TP----IGKETF 255
            C        AG Q        I T+K G    + +    +K+L    TP    I  E +
Sbjct: 156 LCSLKRSNVSAGTQTF------IITRKGGKQQVLPMATELVKILDTYWTPWYDAIPSEYY 209

Query: 256 FINNDKQKMNATQFSIW------FKAKATKAGVNKSAHGVRKFSATISADAGATAHELMA 309
           F     Q M  T  +IW       +   T +   + AH +R   AT      A   E+  
Sbjct: 210 FCTKQGQPM--TPRTIWHLVSRQLQRVDTLSCTKQGAHVLRHTFATNLVRRKANLIEIQN 267

Query: 310 TYGWKTVDQAETYT 323
             G   V   + YT
Sbjct: 268 LLGHADVRMTQIYT 281


>gi|225863775|ref|YP_002749153.1| DNA integration/recombination/invertion protein [Bacillus cereus
           03BB102]
 gi|225788569|gb|ACO28786.1| site-specific recombinase, phage integrase family [Bacillus cereus
           03BB102]
          Length = 368

 Score = 42.0 bits (97), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 27/111 (24%), Positives = 51/111 (45%), Gaps = 4/111 (3%)

Query: 101 QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL---FKWAVRQEYVAINP 157
            II   G     K+   HI+   +S  ++  +    L   R+L      AV+Q  +  NP
Sbjct: 95  HIIPNIGMISLHKLNVMHIQKCYQSALNSGIANNTILFQHRILTAALNLAVKQNIIPRNP 154

Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD 208
                 PK++   I+ WT+E+++QF    S+ S+  + +   + +G+R  +
Sbjct: 155 ATLAVIPKKEKSSIQTWTEEEVKQF-LLHSQESRYHIGYLLAITTGMRLGE 204


>gi|215226|gb|AAA32256.1| integrase [Mycobacterium phage L5]
 gi|2739060|gb|AAC31622.1| L5-integrase [Cloning vector pUC-GM-INT]
 gi|2739066|gb|AAC31625.1| integrase [unidentified cloning vector]
 gi|77632626|gb|ABB00291.1| integrase [Integrative shuttle vector pCONINT]
 gi|302749823|gb|ADL66916.1| integrase [Cloning vector pMC1s::WT-HIV2Pr]
          Length = 332

 Score = 42.0 bits (97), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 54/222 (24%), Positives = 89/222 (40%), Gaps = 27/222 (12%)

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM-----Q 180
           RKH P++       +R +   AV  + +A NPC  +E+       +   T E++     +
Sbjct: 91  RKH-PTARRHAYNVLRAVMNTAVEDKLIAENPC-RIEQKAADERDVEALTPEELDIVAAE 148

Query: 181 QFKSF--------WSE---GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQ 227
            F+ +        W+    G    L  + ++  G+      R G   + N I   + KT 
Sbjct: 149 IFEHYRIAAYILAWTSLRFGELIELRRKDIVDDGMTMKLRVRRGASRVGNKIVVGNAKTV 208

Query: 228 KTGTIITV-----ELPDGFMKLLAMTPIGKETFFINNDK-QKMNATQFSIWFKAKATKAG 281
           ++   +TV     E+    MK       G E F +   +  +++ + F+   K    K G
Sbjct: 209 RSKRPVTVPPHVAEMIRAHMKDRTKMNKGPEAFLVTTTQGNRLSKSAFTKSLKRGYAKIG 268

Query: 282 VNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
             +   H +R   AT +A AGAT  ELMA  G  T   A  Y
Sbjct: 269 RPELRIHDLRAVGATFAAQAGATTKELMARLGHTTPRMAMKY 310


>gi|218442340|ref|YP_002380665.1| hypothetical protein PCC7424_5613 [Cyanothece sp. PCC 7424]
 gi|218175444|gb|ACK74172.1| hypothetical protein PCC7424_5613 [Cyanothece sp. PCC 7424]
          Length = 273

 Score = 42.0 bits (97), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 52/238 (21%), Positives = 96/238 (40%), Gaps = 14/238 (5%)

Query: 93  ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQ 150
           IS++ +  Q +   G    R +T   +   V     T  P +    + +++ LF +A R 
Sbjct: 27  ISYQCHVKQFLEFVGK-PLRDVTLDDLSLWVNRLNLTYQPVTVANKILTVKSLFSFACRV 85

Query: 151 EYVAINPCLSVERPKRK-TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDS 209
            Y+ +N    ++ PK K T   R     ++++  +  +   +  +    +   GLR S+ 
Sbjct: 86  GYLTVNVGSFIKSPKLKDTLAERILDPSEVKRLINA-APNERDSVLLSLMYGCGLRVSEV 144

Query: 210 CRAGVQHLQNN---IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA 266
           C      L+N    +F    +    II   L D  MKL    P   E  F++    ++  
Sbjct: 145 CGLNWSDLKNGKATVFGKGAKTRIVIIPPNLWDRLMKL----PRDGEAVFMSRRGNRLER 200

Query: 267 TQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           T      K     +GV++  S+H +R   A+ + +AG     L  + G   ++  E Y
Sbjct: 201 TYIHKMIKECCHLSGVSEKASSHWLRHSHASHAVEAGCNLRLLQQSLGHSKLETTEKY 258


>gi|166031854|ref|ZP_02234683.1| hypothetical protein DORFOR_01555 [Dorea formicigenerans ATCC
           27755]
 gi|166028307|gb|EDR47064.1| hypothetical protein DORFOR_01555 [Dorea formicigenerans ATCC
           27755]
          Length = 361

 Score = 42.0 bits (97), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 41/205 (20%), Positives = 89/205 (43%), Gaps = 46/205 (22%)

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ---------------Q 181
           ++++R  + +  + +Y+A NP L V+ PK   + I     +++                Q
Sbjct: 126 MSALRSFYSYYFKHQYIATNPTLLVDMPKLHDKAIIRLDIDEVAMLLDYVESAGEHLTGQ 185

Query: 182 FKSFWSEGSQPRLA-FEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITV--- 235
             +++ +     LA    LL +G+R S+     +  +  +NN  ++ T+K G+ + V   
Sbjct: 186 ALAYYQKTKNRDLAILTLLLGTGIRVSECVGLNLTDVDFKNNGITV-TRKGGSQMVVYFG 244

Query: 236 -ELPDGFMKLL-----AMTPIG--KETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAH 287
            E+ D     +      +TP+   +E  F++  +++M                GV    +
Sbjct: 245 DEVADALENYIEADRKVITPLSGHEEALFLSTQRKRM----------------GVQAIEN 288

Query: 288 GVRKFSATISADAGATAHELMATYG 312
            V+K++  ++ +   T H+L +TYG
Sbjct: 289 MVKKYARQVTPNKKITPHKLRSTYG 313


>gi|288799833|ref|ZP_06405292.1| tyrosine type site-specific recombinase [Prevotella sp. oral taxon
           299 str. F0039]
 gi|288333081|gb|EFC71560.1| tyrosine type site-specific recombinase [Prevotella sp. oral taxon
           299 str. F0039]
          Length = 362

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 60/255 (23%), Positives = 106/255 (41%), Gaps = 26/255 (10%)

Query: 95  FESYFDQIIR---KSGDFDYRKITTKHIRSGVESRKHTPSSAIQF----LTSMRVL---- 143
            + Y  +I+R   K  D +  KIT K +    +  +H   S I+      +S R+L    
Sbjct: 100 IDKYLSKILRVYLKDKDIELSKITPKWVERFFDFLEHEFKSFIKKTPLKASSARLLGNRL 159

Query: 144 ---FKWAVRQEYVAINPCLSVERPKRKTEGIRPW-TKEDMQQFKSF-WSEGSQPRLAFEF 198
                 AV+ + +  NPC  V R  +  E  R + T+E++++  S  +  G +   AF F
Sbjct: 160 SGALAEAVKMDIIKDNPCQKV-RAIKAQESQRTYLTQEELKRLASTPYERGERVTKAFLF 218

Query: 199 LLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFF 256
              +GLR SD  +     +  +    +   +KT  +  ++L +G  K+L          F
Sbjct: 219 SCLTGLRFSDVSKLRWAEVSEDFKRITFVQKKTSGLEYLDLSEGATKILKERKNNGGLVF 278

Query: 257 INNDKQKMNATQ-FSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGW 313
            +  ++  NA +  + W      +AG+NK  S H  R   AT+        + +    G 
Sbjct: 279 YDLPRESGNAGKLLNSW----RVRAGINKKISFHTARHTFATMLLTLDVDLYTVSKLLGH 334

Query: 314 KTVDQAETYTKGADR 328
           K +   + Y K  D+
Sbjct: 335 KDIKTTQIYAKIIDK 349


>gi|218264364|ref|ZP_03478221.1| hypothetical protein PRABACTJOHN_03917 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222062|gb|EEC94712.1| hypothetical protein PRABACTJOHN_03917 [Parabacteroides johnsonii
           DSM 18315]
          Length = 302

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 81/166 (48%), Gaps = 23/166 (13%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES---RKHTPSS 132
           SEY   A+   L       FE +  +  +K G F   ++    +R+ + S    K +P S
Sbjct: 19  SEYTIGAYSKDLQ-----QFEDFVKE--KKEGIFVPEEVDADIVRNWIISLLDNKISPVS 71

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE-DMQQF-------KS 184
             + L+S++  FK+ ++Q +V++NP   V  PK K + +  + KE DM++        + 
Sbjct: 72  VNRKLSSLKSFFKFLMKQGFVSVNPLRFVTGPKTK-KPLPTFVKEKDMEELLDGDGFDED 130

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
           F  EG + RL  E L  +G+R S+    G+Q +  +  ++  + TG
Sbjct: 131 F--EGVRDRLILEMLYDTGVRRSE--LVGLQDIDIDYDAMLIKVTG 172


>gi|148651956|ref|YP_001279049.1| tyrosine recombinase XerD [Psychrobacter sp. PRwf-1]
 gi|148571040|gb|ABQ93099.1| tyrosine recombinase XerD [Psychrobacter sp. PRwf-1]
          Length = 312

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 61/279 (21%), Positives = 106/279 (37%), Gaps = 32/279 (11%)

Query: 75  ISEYRKSAHWGSLAVNSRISF-------ESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127
           I+E+R++     L+  +R ++       E+   + +    D D  +  T   R G     
Sbjct: 24  ITEFRQAMLARGLSTRTRNAYVRDLKLCETTHSKALTLWSDMDVMQCLTALDRQG----- 78

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-- 185
            TP +  + L+S+R  + W V  E    NPC  ++ PK      +  ++ D++   S   
Sbjct: 79  KTPRTQARMLSSLRQFYLWMVGNERREDNPCERIKTPKIGRSLPKDLSENDVESLLSAPD 138

Query: 186 --WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI----FSIKTQKT-----GTIIT 234
              + G + +   E L   GLR S+     ++ +  N      + K  KT     G   +
Sbjct: 139 TSTALGLRDKAMLEVLYACGLRVSELMNLSLEQVNLNAGWLQITGKGNKTRLVPLGEYAS 198

Query: 235 VELPDGFM----KLLAMTPIGK-ETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAH 287
             L D       +L+A    G  +  F+      M    F    K  A +AG+  + S H
Sbjct: 199 DALDDYLTHARGELVAHLKSGNCQAVFLTTQGGYMTRQNFWYMIKKYAKQAGIQSDLSPH 258

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            +R   AT   + GA    +    G   +   + YT  A
Sbjct: 259 TLRHAFATHLLNHGADLRSVQLLLGHSDLSTTQIYTHVA 297


>gi|187250579|ref|YP_001875061.1| integrase family protein [Elusimicrobium minutum Pei191]
 gi|186970739|gb|ACC97724.1| Integrase family protein [Elusimicrobium minutum Pei191]
          Length = 295

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 43/215 (20%), Positives = 91/215 (42%), Gaps = 16/215 (7%)

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF-KSFWSEG 189
           ++ ++ ++ MR   K+ ++ E +  NP   +  PKR+    +  T+E+  +   +  ++G
Sbjct: 70  NTVLRKISVMRSFAKYLLKHEVIKNNPFKLLPLPKREKLLPKFLTQEETDRLIDTAANQG 129

Query: 190 SQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--------TIITVELP 238
             P   +  FE +  SGLR S+     ++ +  N+  ++    G        T + +E  
Sbjct: 130 KLPARDKALFELIYSSGLRRSEVTGLSIKDIDLNLGVVRVMGKGSKERLVPITDLAIEAL 189

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATI 296
             ++    +   G +  F+N    ++     +   K    KA + +  +AH +R   AT 
Sbjct: 190 KEYLSTRGVYNSG-DPLFLNRLGGRLTGDGLAYLVKNITIKANLARKVTAHSLRHSFATH 248

Query: 297 SADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330
             + G     L    G K++   + YT    DR++
Sbjct: 249 MLNNGCDLRSLQEMLGHKSLSATQVYTHVSLDRLK 283


>gi|15802459|ref|NP_288485.1| putative integrase for prophage CP-933U [Escherichia coli O157:H7
           EDL933]
 gi|15832027|ref|NP_310800.1| integrase [Escherichia coli O157:H7 str. Sakai]
 gi|168765371|ref|ZP_02790378.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC4501]
 gi|168789398|ref|ZP_02814405.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC869]
 gi|168802960|ref|ZP_02827967.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC508]
 gi|217329608|ref|ZP_03445687.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. TW14588]
 gi|261226506|ref|ZP_05940787.1| putative integrase for prophage CP-933U [Escherichia coli O157:H7
           str. FRIK2000]
 gi|261254686|ref|ZP_05947219.1| putative integrase for prophage CP-933U [Escherichia coli O157:H7
           str. FRIK966]
 gi|12516149|gb|AAG57039.1|AE005423_1 putative integrase for prophage CP-933U [Escherichia coli O157:H7
           str. EDL933]
 gi|13362241|dbj|BAB36196.1| putative integrase [Escherichia coli O157:H7 str. Sakai]
 gi|189364882|gb|EDU83298.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC4501]
 gi|189371014|gb|EDU89430.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC869]
 gi|189375237|gb|EDU93653.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC508]
 gi|217317376|gb|EEC25805.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. TW14588]
 gi|320189647|gb|EFW64304.1| Putative integrase [Escherichia coli O157:H7 str. EC1212]
 gi|326340080|gb|EGD63885.1| Putative integrase [Escherichia coli O157:H7 str. 1044]
 gi|326346464|gb|EGD70200.1| Putative integrase [Escherichia coli O157:H7 str. 1125]
          Length = 340

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 44/197 (22%), Positives = 79/197 (40%), Gaps = 6/197 (3%)

Query: 36  PYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISF 95
           P   ES  + A    L     K E   + R +  T   L  ++  SA++  L+  ++  +
Sbjct: 27  PTSRESVTLTAIEDGLAALWKKYEETVNHRDRAMTFGRLWEKFLASAYYSELSPRTQKDY 86

Query: 96  ESYFDQIIRKSGDFDYRKITTKHIRSGVESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVA 154
             +  +++   G      +  +HIR  ++ R + + + A    +SM  ++ W   + YV 
Sbjct: 87  LQHQKKLLAVFGKVLADSVKPEHIRRYMDKRGEQSKTQANHEKSSMSRVYSWGYERGYVK 146

Query: 155 INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR-LAFEFLLYSGLRCSDSCRAG 213
            NPC  V + K K        KE    +++  S    P  +A E       R SD     
Sbjct: 147 ANPCAGVSKFKAKNRERYVTDKE----YQAVLSVAPLPVFIAMEIAYLCAARVSDVLSLK 202

Query: 214 VQHLQNNIFSIKTQKTG 230
            + + N+   I+  KTG
Sbjct: 203 WEQIGNDGIFIQQGKTG 219


>gi|163737550|ref|ZP_02144967.1| phage integrase [Phaeobacter gallaeciensis BS107]
 gi|161389076|gb|EDQ13428.1| phage integrase [Phaeobacter gallaeciensis BS107]
          Length = 343

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 57/259 (22%), Positives = 101/259 (38%), Gaps = 15/259 (5%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           LI  Y +S  +  L   +R  +  Y   I     + D  +I T HI     +       A
Sbjct: 63  LILSYYESDPYKKLKPRTRSDYRRYISHIREIWAEKDPARIETHHIYELHRANADHWRQA 122

Query: 134 IQFLTSMRVLFKWA-----VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
              +  M VL   A     +++E+   NP   +   K++++G  PW  +   +F++  S+
Sbjct: 123 NYLVQVMVVLMNHARLIGFIKKEHG--NPAKGIPLFKQQSDGWEPWPDDVRAEFEALASK 180

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248
             + RL +E  + +G R  D  +   +H  +  F     KT   + + L +     L   
Sbjct: 181 --RARLVYELCVGTGQRIGDVVKMKWEHFSDEGFDFTQGKTDKPLWIPLTNRLKTHLEGI 238

Query: 249 PIGKETFFINNDKQ----KMNATQF-SIWFKAKATKAGVNKSAHGVRKFSATISADAGAT 303
                T   +   +    ++ A +  +I  K K  KA   K+ HG+RK +      AG  
Sbjct: 239 ARTDGTVVTDAKDRPVSYRIVAEEMRTIKRKMKHEKASYYKT-HGLRKNATIELYLAGCD 297

Query: 304 AHELMATYGWKTVDQAETY 322
              + A  G   V+  + Y
Sbjct: 298 DEMVKAVTGHSGVEMLKKY 316


>gi|300775316|ref|ZP_07085178.1| tyrosine recombinase XerD [Chryseobacterium gleum ATCC 35910]
 gi|300506056|gb|EFK37192.1| tyrosine recombinase XerD [Chryseobacterium gleum ATCC 35910]
          Length = 304

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 51/220 (23%), Positives = 86/220 (39%), Gaps = 18/220 (8%)

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
            +  +K +  S  ++++S++  FK+ +  EY   NP   +E PK         +  D+ +
Sbjct: 62  NLSKQKFSERSQARWISSIKAFFKFLLEDEYREDNPAALLEGPKLGLYLPDTLSLPDINK 121

Query: 182 FKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT------ 231
             +        G + +   E L   GLR S+     + ++      IK    G       
Sbjct: 122 IIAAIEVNTDLGKRNQCIIEVLYGCGLRVSELIDLKISNINFKEQYIKVHGKGNKTRFVP 181

Query: 232 --IITVELPDGFMK-LLAMTPIGK---ETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284
               T +L D ++K + +   I K   +T F+N+    M+     +  K    KAGVNK 
Sbjct: 182 LADYTADLLDSYIKEVRSKGKINKKYEDTLFLNSRGTSMSRVIVFLIIKELTDKAGVNKK 241

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
            S H  R   AT     GA    +    G  ++   E YT
Sbjct: 242 ISPHTFRHSFATHLLQNGADLRYIQEMLGHSSITTTEIYT 281


>gi|90422292|ref|YP_530662.1| phage integrase [Rhodopseudomonas palustris BisB18]
 gi|90104306|gb|ABD86343.1| phage integrase [Rhodopseudomonas palustris BisB18]
          Length = 304

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 47/240 (19%), Positives = 101/240 (42%), Gaps = 27/240 (11%)

Query: 114 ITTKHIRSGVES----RKHTPSSAIQFLTSMRVLFKWAV-RQEYVAINPCLSVERPKRKT 168
           +TT+H+R  +ES    RK +PS+  + +  +R  F++   R E         ++ P+RK 
Sbjct: 48  VTTEHLRDYLESMMVARKLSPSTVRRRIACLRAFFRFLDDRGEMPDPFTGWRLKLPRRKR 107

Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPR----------LAFEFLLYSGLRCSDSCRAGVQHLQ 218
              R  ++E+  Q  +        R          +    ++ +G+R  + C+     + 
Sbjct: 108 LP-RALSREEANQLLTSARAPGAARQSLPASTPLCVEIRLMISTGIRVGELCKIATGDVS 166

Query: 219 NNIFSIKTQKTGT---IITVELPDGFMKLLAMTPI------GKETFFINNDKQKMNATQF 269
           ++  S++    G+   ++ V  P    +L  +T +      G    F+N + + +    F
Sbjct: 167 SDGASLRIHGKGSRDRVVYVSNPALRNELRKLTTLRQRLSAGDGPLFVNRNGENLRPYSF 226

Query: 270 SIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
               +  A +AG+ +  + H +R  +AT+  ++G     +    G  ++   E YT  +D
Sbjct: 227 RTKLRNFAGQAGLRRRVTPHMLRHTAATLLIESGVDIRIVQRLLGHSSIATTEIYTHVSD 286


>gi|326539202|gb|ADZ87417.1| phage integrase [Brucella melitensis M5-90]
          Length = 116

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 30/53 (56%)

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
           HG+RK    I A+ GA+  ++M T+G   +  AE YT+ A++ RL      R+
Sbjct: 57  HGLRKTLGKILAEGGASTRQIMDTFGHDDIAHAELYTREAEQARLATDGMSRV 109


>gi|301020468|ref|ZP_07184556.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 196-1]
 gi|299881824|gb|EFI90035.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 196-1]
          Length = 341

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 45/197 (22%), Positives = 78/197 (39%), Gaps = 6/197 (3%)

Query: 36  PYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISF 95
           P   ES  + A    L     K E   + R +  T   L  ++  SA +  L+  ++  +
Sbjct: 28  PTSRESVTLTAIKDGLAALWKKYEETVNNRDRAMTFGRLWEKFLASACYSDLSPRTQKDY 87

Query: 96  ESYFDQIIRKSGDFDYRKITTKHIRSGVESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVA 154
             +  +++   G      I  +HIR  ++ R + + + A    +SM  ++ W   + YV 
Sbjct: 88  LQHQKKLLAVFGKVPADSIKPEHIRRYMDKRGEQSKTQANHEKSSMSRVYSWGYERGYVK 147

Query: 155 INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR-LAFEFLLYSGLRCSDSCRAG 213
            NPC  V + K K        KE    +++  S    P  +A E       R SD     
Sbjct: 148 ANPCAGVSKFKAKNRERYVTDKE----YQAVLSVAPLPVFIAMEIAYLCAARVSDVLSLK 203

Query: 214 VQHLQNNIFSIKTQKTG 230
            + + N+   I+  KTG
Sbjct: 204 WEQIGNDGIFIQQGKTG 220


>gi|293606638|ref|ZP_06688993.1| phage integrase family site-specific recombinase [Achromobacter
           piechaudii ATCC 43553]
 gi|292814922|gb|EFF74048.1| phage integrase family site-specific recombinase [Achromobacter
           piechaudii ATCC 43553]
          Length = 329

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 33/146 (22%), Positives = 59/146 (40%), Gaps = 7/146 (4%)

Query: 107 GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
            +F   +I  KH+ +       TP+ A + L+ ++ +F  AV  + V  NPC+ +   +R
Sbjct: 90  AEFAPDQIRPKHVAALKMDMADTPNMANRVLSFLKTVFAHAVEWQLVDSNPCVGI---RR 146

Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226
             EG R     D +    +     + ++  + L  +G R  D        +     +   
Sbjct: 147 HAEGKRQRYITDDEYAAIYAKANPRMQVIMDLLYLTGQRVGDVIAIKRADMNEEGIAFDQ 206

Query: 227 QKTGTIITV----ELPDGFMKLLAMT 248
           QKTG  + V    EL D   +  A+ 
Sbjct: 207 QKTGAKLLVRWTPELRDAISRANALN 232


>gi|262376584|ref|ZP_06069812.1| tyrosine recombinase XerC [Acinetobacter lwoffii SH145]
 gi|262308294|gb|EEY89429.1| tyrosine recombinase XerC [Acinetobacter lwoffii SH145]
          Length = 305

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 46/190 (24%), Positives = 77/190 (40%), Gaps = 31/190 (16%)

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC--LSVERPKRKTEGI--------- 171
           VE  + +PSS  + L+S+R   KWA + +++A NP     ++R  R   G+         
Sbjct: 61  VEQHQLSPSSLQRMLSSIRQFMKWAEQAQHLAFNPADDFQLKRQSRPLPGMVDIETVNQI 120

Query: 172 --RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229
             +P  + ++QQ    W      +   E L  SGLR ++     ++ +  N   ++    
Sbjct: 121 IDQPAPENEIQQ--QMWLRD---KAILELLYSSGLRLAELQNLRIKDIDFNRQLLRITGK 175

Query: 230 GTIITVELPDG------FMKLLAMTPIGKETF------FINNDKQKMNATQFSIWFKAKA 277
           G    + +P G       M  L + P+    F      FI      + A Q     K +A
Sbjct: 176 GNKTRI-VPFGSKAKASVMAWLQVYPLWNGDFVPEANVFITQKGNPLGARQIENRVKFQA 234

Query: 278 TKAGVNKSAH 287
            +AGVN   H
Sbjct: 235 QRAGVNVDLH 244


>gi|300941166|ref|ZP_07155675.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 21-1]
 gi|294490096|gb|ADE88852.1| putative integrase for prophage CP-933U [Escherichia coli IHE3034]
 gi|300454112|gb|EFK17605.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 21-1]
          Length = 341

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 45/197 (22%), Positives = 78/197 (39%), Gaps = 6/197 (3%)

Query: 36  PYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISF 95
           P   ES  + A    L     K E   + R +  T   L  ++  SA +  L+  ++  +
Sbjct: 28  PTSRESVTLTAIKDGLAALWKKYEETVNNRDRAMTFGRLWEKFLASACYSDLSPRTQKDY 87

Query: 96  ESYFDQIIRKSGDFDYRKITTKHIRSGVESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVA 154
             +  +++   G      I  +HIR  ++ R + + + A    +SM  ++ W   + YV 
Sbjct: 88  LQHQKKLLAVFGKVPADSIKPEHIRRYMDKRGEQSKTQANHEKSSMSRVYSWGYERGYVK 147

Query: 155 INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR-LAFEFLLYSGLRCSDSCRAG 213
            NPC  V + K K        KE    +++  S    P  +A E       R SD     
Sbjct: 148 ANPCAGVSKFKAKNRERYVTDKE----YQAVLSVAPLPVFIAMEIAYLCAARVSDVLSLK 203

Query: 214 VQHLQNNIFSIKTQKTG 230
            + + N+   I+  KTG
Sbjct: 204 WEQIGNDGIFIQQGKTG 220


>gi|302391937|ref|YP_003827757.1| integrase family protein [Acetohalobium arabaticum DSM 5501]
 gi|302204014|gb|ADL12692.1| integrase family protein [Acetohalobium arabaticum DSM 5501]
          Length = 310

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 50/222 (22%), Positives = 94/222 (42%), Gaps = 26/222 (11%)

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR--KTEGIRPWTKEDMQQF- 182
           + ++P +  + L S+R  F++  ++  +  NP  S+E  K   K+E I    +++M+++ 
Sbjct: 74  KDNSPEARNRKLYSLRSFFEYLKKRNIIKNNPTDSIEASKSELKSEPIY-LNEKNMEKYL 132

Query: 183 ---KSFWSEGSQPRLAF-EFLLYSGLRCSDSCRAGVQHLQNNIFSIK------------- 225
              K++ S+     LA  +  LYSGLR S+     +  +     SIK             
Sbjct: 133 EAIKNYNSKYCSRDLAINKLFLYSGLRISELVNLNLDDINYEDQSIKFFGKGNKERYVPL 192

Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS 285
            Q+  T I   LPD   K+       ++  F++N +++++        K  A KAGV  +
Sbjct: 193 HQEALTAIKDYLPDR-NKITPKNQDARQALFLSNQRRRISVRTIQKMVKKYAKKAGVRNA 251

Query: 286 A----HGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           +    H +R   A++          L    G   +   + YT
Sbjct: 252 SKITPHKLRHTFASLLYQKTKDLRVLQDLLGHSDISTTQIYT 293


>gi|300361568|ref|ZP_07057745.1| tyrosine recombinase XerD [Lactobacillus gasseri JV-V03]
 gi|300354187|gb|EFJ70058.1| tyrosine recombinase XerD [Lactobacillus gasseri JV-V03]
          Length = 302

 Score = 41.6 bits (96), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 51/271 (18%), Positives = 111/271 (40%), Gaps = 28/271 (10%)

Query: 89  VNSRISFESYFDQIIRK---SGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFK 145
           ++ R   E Y D +  +   S + DY  +      +  + +    +S  + ++S+R  ++
Sbjct: 30  ISYRTDLEEYLDYLQDQNETSWEVDY--LVVDAFLAAQKDKGKATTSISRMISSLRKFYQ 87

Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KSFWSEGSQPRLAFEFLLY 201
           W +RQ+ +  +P + ++ PK +       ++E++ +      +    G + R   E L  
Sbjct: 88  WLLRQDIIERDPLIKIDSPKSERRLPTALSEEEVDKLLAAPDTNTPLGIRDRAMLELLYA 147

Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKTQKTGT------IITVELP--DGFMKLLAMTPIGK- 252
           +G+R S+        + +++  I+    G+      I  V L   + + K +    + K 
Sbjct: 148 TGMRVSELINLRTGDIHSDLKIIRVLGKGSKERLVPITEVALSWLEKYQKDVRDAQVLKS 207

Query: 253 ----ETFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSA--HGVRKFSATISADAGATA 304
               +  F+NN   ++  T+ ++W K K      G+ K+   H +R   AT   + GA  
Sbjct: 208 GQFTDVIFLNNHGHQL--TRQAVWQKIKKYCQLVGITKNVTPHTLRHTFATHLLENGADL 265

Query: 305 HELMATYGWKTVDQAETYTKGADRIRLGIKN 335
             +    G   +   + YT    +  L + N
Sbjct: 266 RVVQEILGHSDITTTQIYTNLTQKHILEVYN 296


>gi|118725028|ref|NP_720381.2| phage integrase family site specific recombinase [Shewanella
           oneidensis MR-1]
 gi|112949651|gb|AAN52981.2| site-specific recombinase, phage integrase family [Shewanella
           oneidensis MR-1]
          Length = 456

 Score = 41.6 bits (96), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 41/198 (20%), Positives = 80/198 (40%), Gaps = 9/198 (4%)

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-----GSQ 191
           L +++ +FK A+RQ +   NPC+ + + KR+    R  +  +MQ+      E     GS 
Sbjct: 163 LDTLQSVFKLALRQGHCLTNPCIGIRQNKRRVLN-RFLSVAEMQRLSVALDECEAVGGSI 221

Query: 192 PRLA--FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP 249
            + A     LL +G R S+      ++++ N   +   KTG  + + +    + +L+   
Sbjct: 222 AQCADVLRLLLLTGCRLSEITFLKGEYVRGNELHLPDSKTGAKV-LYIGQAAVDILSRYH 280

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMA 309
               T      +    +   S+W + +      +   H +R   A+ +   G +   + +
Sbjct: 281 CKANTELFPMKQGASTSLVQSLWLRLRKQIGVEDVRLHDLRHTFASYAVMDGCSIPMVAS 340

Query: 310 TYGWKTVDQAETYTKGAD 327
             G K V     YT   D
Sbjct: 341 LLGHKKVTMTLRYTHVGD 358


>gi|4490352|emb|CAB38715.1| integrase-like protein [Enterobacteria phage H19J]
          Length = 357

 Score = 41.6 bits (96), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 33/147 (22%), Positives = 64/147 (43%), Gaps = 2/147 (1%)

Query: 93  ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQ 150
           + + S    I RK  D     I+TK + + + +   +   +SA    +++  +F+ A+ +
Sbjct: 98  LDYASKIRAIRRKLPDKPLTDISTKEVAAMLNTNVAEGKAASAKLIRSTLVDVFREAIAE 157

Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210
            +VA NP  +    K +    R    E ++ + +        RLA +  + +G R  D C
Sbjct: 158 GHVATNPVTATRTAKSEVRRSRLTANEYVEIYHAAEPLPIWLRLAMDLAVVTGQRVGDLC 217

Query: 211 RAGVQHLQNNIFSIKTQKTGTIITVEL 237
           R     + +N   I+  KTG  + + L
Sbjct: 218 RMKWSDINDNHLHIEQSKTGAKLAIPL 244


>gi|163737292|ref|ZP_02144710.1| Integrase [Phaeobacter gallaeciensis BS107]
 gi|161389896|gb|EDQ14247.1| Integrase [Phaeobacter gallaeciensis BS107]
          Length = 370

 Score = 41.6 bits (96), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 65/293 (22%), Positives = 113/293 (38%), Gaps = 20/293 (6%)

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE-- 124
           K  TL  LI  Y ++ H+ +LA  +R  +    D  +    D     I T  I +G+   
Sbjct: 62  KAGTLGGLIQSYFETEHYQNLAEATRRDYRKCAD-FLEPIRDTPIHVIDTPLI-AGIHDK 119

Query: 125 -SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV---ERPKRKTEGIRPWTKEDMQ 180
            ++K     A    T +  +F++ + +  ++ N    V    RP+ +    RPWT E+  
Sbjct: 120 AAKKIGWRRANMVRTLLSEVFRYNIPKGLISANFAKDVIPKRRPRDRAYANRPWTIEERD 179

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
                       R+A   ++ +GL  SD+ R     +          KTG  + + +   
Sbjct: 180 TV--LGKAKPHVRVALALMMNTGLDPSDALRLRNDQVDGGTIWGVRGKTGEEVAIPVSPT 237

Query: 241 FMKLLAMTPI-GKETFFINNDKQKMNATQFS-IW--FKAKATKAGVNKSA---HGVRKFS 293
               L   P    ET   N+  +      FS +W  FK      G+ +      G+R   
Sbjct: 238 LQAALNRMPNHDAETVLSNSRGEAWTYNGFSTVWHRFKTALENEGLIEKGLTLKGLRHTV 297

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346
           AT   +AG     +    G KT   A  Y++ A+   L  KN   ++++ + +
Sbjct: 298 ATTLREAGLDERRIADLLGQKTPSMARHYSRSAN---LANKNRETMATLEEEN 347


>gi|260844576|ref|YP_003222354.1| integrase [Escherichia coli O103:H2 str. 12009]
 gi|257759723|dbj|BAI31220.1| integrase [Escherichia coli O103:H2 str. 12009]
          Length = 341

 Score = 41.6 bits (96), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 44/197 (22%), Positives = 79/197 (40%), Gaps = 6/197 (3%)

Query: 36  PYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISF 95
           P   ES  + A    L     + E   + R +  T   L  ++  SA++  L+  ++  +
Sbjct: 28  PTSRESVTLTAIKDGLAALWKRYEETVNNRDRAMTFGRLWEKFLASAYYSDLSPRTQKDY 87

Query: 96  ESYFDQIIRKSGDFDYRKITTKHIRSGVESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVA 154
             +  +++   G      I  +HIR  ++ R + + + A    +SM  ++ W   + YV 
Sbjct: 88  LQHQKKLLAVFGKVPADSIKPEHIRRYMDKRGEQSKTQANHEKSSMSRVYSWGYERGYVK 147

Query: 155 INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR-LAFEFLLYSGLRCSDSCRAG 213
            NPC  V + K K        KE    +++  S    P  +A E       R SD     
Sbjct: 148 GNPCAGVSKFKAKNRERYVTDKE----YQAVLSVAPLPVFIAMEIAYLCAARVSDVLSLK 203

Query: 214 VQHLQNNIFSIKTQKTG 230
            + + N+   I+  KTG
Sbjct: 204 WEQIGNDGIFIQQGKTG 220


>gi|300767490|ref|ZP_07077402.1| tyrosine recombinase XerD [Lactobacillus plantarum subsp. plantarum
           ATCC 14917]
 gi|300495309|gb|EFK30465.1| tyrosine recombinase XerD [Lactobacillus plantarum subsp. plantarum
           ATCC 14917]
          Length = 305

 Score = 41.6 bits (96), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 45/214 (21%), Positives = 89/214 (41%), Gaps = 24/214 (11%)

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KSFW 186
           ++ I  ++S+R  F++  +   +  +P L ++ PKR     +  +  ++++     K   
Sbjct: 77  NTIIHSVSSLRKFFQYLAQMHAIDTDPMLKIDTPKRAQHLPQVLSPREVERLLAVPKLNT 136

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
             G + R   E +  +GLR S++    +  L  ++  I+T   G    + +P G + +  
Sbjct: 137 PLGLRDRTLLEVMYATGLRVSETINLTMDDLHLDLGLIQTIGKGDKERI-IPIGDVAIDF 195

Query: 247 MTPIGKET-------------FFINNDKQKMNATQFSIW--FKAKATKAGVNKSA--HGV 289
           +T   K                FINN   K+  ++  +W   KA+   AG+ K+   H +
Sbjct: 196 ITRYLKTARPKLVSAKRRNSYLFINNHGGKL--SRQGVWKNLKAEVKAAGIEKNVTPHTL 253

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           R   AT   + GA    +    G   +   + YT
Sbjct: 254 RHSFATHILENGADLRVVQELLGHADISTTQIYT 287


>gi|326572192|gb|EGE22188.1| tyrosine recombinase XerD [Moraxella catarrhalis BC7]
          Length = 307

 Score = 41.6 bits (96), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 59/273 (21%), Positives = 101/273 (36%), Gaps = 23/273 (8%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS---GVESRKHTPS 131
           +SE+R +     L++ +R ++       IR S D          +R+    ++  K +  
Sbjct: 22  LSEFRAAMLARGLSIATRNAYSQDVRLCIRLS-DMPVNLWQPSDVRNHLMCLKDAKKSER 80

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS---- 187
           S  + L S+   F W +   Y   NPC S++ PK      +  +++++            
Sbjct: 81  SIARVLASLCQFFLWQIESGYREDNPCESIKTPKLGKTLPKTLSEQEVSSLLDAPDISSV 140

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
            G + +   E L   GLR S+     ++HL      +     G  + + +P G   L A+
Sbjct: 141 RGLRDKAMLEVLYACGLRVSELTSLSLEHLNLTAGWLSVTGKGNKMRL-IPLGEYALSAL 199

Query: 248 TP---------IGK---ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFS 293
                      IGK   +  F+      M    F    K  A  AG+N   S H +R   
Sbjct: 200 NEYLAVRGSLLIGKKDCQAVFLTEQGGYMTRHNFWHLIKKYALMAGINTAISPHTLRHAF 259

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           AT   + GA    +    G   +   + YT  A
Sbjct: 260 ATHLVNHGADLRSVQLLLGHSDLSTTQIYTHVA 292


>gi|314939501|ref|ZP_07846733.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133a04]
 gi|314944175|ref|ZP_07850820.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133C]
 gi|314951902|ref|ZP_07854934.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133A]
 gi|314994468|ref|ZP_07859747.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133B]
 gi|314997872|ref|ZP_07862773.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133a01]
 gi|313588097|gb|EFR66942.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133a01]
 gi|313591123|gb|EFR69968.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133B]
 gi|313595936|gb|EFR74781.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133A]
 gi|313597237|gb|EFR76082.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133C]
 gi|313641202|gb|EFS05782.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133a04]
          Length = 381

 Score = 41.2 bits (95), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 32/130 (24%), Positives = 64/130 (49%), Gaps = 11/130 (8%)

Query: 91  SRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVR 149
           +++  E  F++ I+ K G F  ++ITTKH++  +     T        ++   +FK+A+ 
Sbjct: 88  TQLKIEIKFNKWILPKYGQFRIKEITTKHVQKILNQWAKTTDQYKVLHSTASRIFKYAMT 147

Query: 150 QEYVAINPCLSVERPKRKTE----GIRPWTKEDMQQ-FKSFWSEGSQPRLAFE-----FL 199
              +  NPC  V  P R  E     ++ ++++ ++  F+   S+ S  R  ++     FL
Sbjct: 148 LGIITKNPCELVIMPNRNVEKKKDTVKIYSRDQLESLFQYLESKRSTYRADYDKTLLRFL 207

Query: 200 LYSGLRCSDS 209
            +SG R S++
Sbjct: 208 FFSGCRISEA 217


>gi|197301719|ref|ZP_03166789.1| hypothetical protein RUMLAC_00445 [Ruminococcus lactaris ATCC
           29176]
 gi|197299159|gb|EDY33689.1| hypothetical protein RUMLAC_00445 [Ruminococcus lactaris ATCC
           29176]
          Length = 375

 Score = 41.2 bits (95), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 38/196 (19%), Positives = 85/196 (43%), Gaps = 28/196 (14%)

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ----P 192
           ++++R  + +  +++ ++ NP L V+ PK   + I     +++     +   G +     
Sbjct: 139 MSALRSFYGYYFKRQIISKNPTLLVDMPKLHEKAIIRLDTDEIAMLLDYVEHGGENLTGQ 198

Query: 193 RLAF------------EFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELP 238
           RLA+              LL +G+R S+     VQ +  +NN   + T+K G  + V   
Sbjct: 199 RLAYYEKTKNRDLAILTLLLGTGIRVSECVGLDVQDVDFKNNGIKV-TRKGGNEMVVYFG 257

Query: 239 DGFMKLLAMTPIGKETFFINNDKQK--MNATQFSIWFKAKATKAGVNKSAHGVRKFSATI 296
           +     L       +T+     K    ++  + +++   +  + GV    + V+K++  +
Sbjct: 258 EEVEHAL-------KTYLYTTRKSTVPLSGHENALFLSTQRKRMGVQAVENMVKKYAREV 310

Query: 297 SADAGATAHELMATYG 312
           + +   T H+L +TYG
Sbjct: 311 TPNKKITPHKLRSTYG 326


>gi|28378545|ref|NP_785437.1| integrase/recombinase [Lactobacillus plantarum WCFS1]
 gi|254556759|ref|YP_003063176.1| integrase/recombinase [Lactobacillus plantarum JDM1]
 gi|308180702|ref|YP_003924830.1| integrase/recombinase [Lactobacillus plantarum subsp. plantarum
           ST-III]
 gi|28271381|emb|CAD64286.1| integrase/recombinase [Lactobacillus plantarum WCFS1]
 gi|254045686|gb|ACT62479.1| integrase/recombinase [Lactobacillus plantarum JDM1]
 gi|308046193|gb|ADN98736.1| integrase/recombinase [Lactobacillus plantarum subsp. plantarum
           ST-III]
          Length = 296

 Score = 41.2 bits (95), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 45/214 (21%), Positives = 89/214 (41%), Gaps = 24/214 (11%)

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KSFW 186
           ++ I  ++S+R  F++  +   +  +P L ++ PKR     +  +  ++++     K   
Sbjct: 68  NTIIHSVSSLRKFFQYLAQMHAIDTDPMLKIDTPKRAQHLPQVLSPREVERLLAVPKLNT 127

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
             G + R   E +  +GLR S++    +  L  ++  I+T   G    + +P G + +  
Sbjct: 128 PLGLRDRTLLEVMYATGLRVSETINLTMDDLHLDLGLIQTIGKGDKERI-IPIGDVAIDF 186

Query: 247 MTPIGKET-------------FFINNDKQKMNATQFSIW--FKAKATKAGVNKSA--HGV 289
           +T   K                FINN   K+  ++  +W   KA+   AG+ K+   H +
Sbjct: 187 ITRYLKTARPKLVSAKRRNSYLFINNHGGKL--SRQGVWKNLKAEVKAAGIEKNVTPHTL 244

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           R   AT   + GA    +    G   +   + YT
Sbjct: 245 RHSFATHILENGADLRVVQELLGHADISTTQIYT 278


>gi|299142969|ref|ZP_07036095.1| integrase [Prevotella oris C735]
 gi|298575585|gb|EFI47465.1| integrase [Prevotella oris C735]
          Length = 428

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 52/233 (22%), Positives = 93/233 (39%), Gaps = 29/233 (12%)

Query: 90  NSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVR 149
           N  ISFE + ++     G  DY +     ++     R  T S  + FL   +   +W+++
Sbjct: 163 NPNISFEDFTEE-----GLNDYLEFLGHQLKM----RNSTISKQVGFL---KWFLRWSMK 210

Query: 150 QEYVAINPCLSVERPKRKT--EGIRPWTKEDMQQFKSFWSEGSQPRL-----AFEFLLYS 202
           + Y   N      +PK K   + I   T+++ +Q + +   GS+  L      F F  ++
Sbjct: 211 KGYHQ-NAAFETYKPKLKNPDKAIIFLTRKEQEQLRDYQIPGSKQYLERVRDVFSFCCFT 269

Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM---TPIGKETFFINN 259
           GLR SD+       ++++   I T KT   + +EL      +L      P   +      
Sbjct: 270 GLRYSDAYNLRRSDIKDDHIDITTIKTTDHLKIELNKHSRSILDKYKDVPFKNDKALPVI 329

Query: 260 DKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYG 312
             Q+MN      + K     AG++   H +  +      D     +ELM T+ 
Sbjct: 330 SNQRMNE-----YLKELCELAGIDSPVH-ITYYRGQQRIDETRPKYELMGTHA 376


>gi|291283208|ref|YP_003500026.1| Site-specific recombinase, phage integrase family [Escherichia coli
           O55:H7 str. CB9615]
 gi|290763081|gb|ADD57042.1| Site-specific recombinase, phage integrase family [Escherichia coli
           O55:H7 str. CB9615]
 gi|320663362|gb|EFX30662.1| Site-specific recombinase, phage integrase family protein
           [Escherichia coli O55:H7 str. USDA 5905]
          Length = 341

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 44/197 (22%), Positives = 79/197 (40%), Gaps = 6/197 (3%)

Query: 36  PYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISF 95
           P   ES  + A    L     K E   + R +  T   L  ++  SA++  L+  ++  +
Sbjct: 28  PTSRESVTLTAIEDGLAALWKKYEETVNHRDRAMTFGRLWEKFLASAYYSELSPRTQKDY 87

Query: 96  ESYFDQIIRKSGDFDYRKITTKHIRSGVESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVA 154
             +  +++   G      +  +HIR  ++ R + + + A    +SM  ++ W   + YV 
Sbjct: 88  LQHQKKLLAVFGKVLADSVKPEHIRRYMDKRGEQSKTQANHEKSSMSRVYSWGYERGYVK 147

Query: 155 INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR-LAFEFLLYSGLRCSDSCRAG 213
            NPC  V + K K        KE    +++  S    P  +A E       R SD     
Sbjct: 148 ANPCAGVSKFKAKNRERYVTDKE----YQAVLSVAPVPVFIAMEIAYLCAARISDVLSLK 203

Query: 214 VQHLQNNIFSIKTQKTG 230
            + + N+   I+  KTG
Sbjct: 204 WEQIGNDGIFIQQGKTG 220


>gi|168208118|ref|ZP_02634123.1| site-specific recombinase, phage integrase family protein
           [Clostridium perfringens E str. JGS1987]
 gi|170660597|gb|EDT13280.1| site-specific recombinase, phage integrase family protein
           [Clostridium perfringens E str. JGS1987]
          Length = 312

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 32/143 (22%), Positives = 66/143 (46%), Gaps = 17/143 (11%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK---HIRSGVESRKHTP 130
           L+ EY         ++++  ++E+ F + I   GD    +I TK   H ++ ++  K +P
Sbjct: 21  LLEEYITELQVNQCSIHTIKTYETAFKRFICDEGDLRLSEINTKVINHFKNNLKD-KVSP 79

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
            +   +++ +R +F +A +QEY+       +E    K +    +   D ++ +   SEG 
Sbjct: 80  RTINTYISHLRAVFNYAYKQEYMD-----KLEIKLIKVQQKVKYVPTD-EEIEILLSEGR 133

Query: 191 QP-------RLAFEFLLYSGLRC 206
           +        RLA   +  +G+RC
Sbjct: 134 KETYSNYVCRLACMVMCTTGIRC 156


>gi|329962342|ref|ZP_08300347.1| tyrosine recombinase XerD [Bacteroides fluxus YIT 12057]
 gi|328530203|gb|EGF57084.1| tyrosine recombinase XerD [Bacteroides fluxus YIT 12057]
          Length = 317

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 59/270 (21%), Positives = 108/270 (40%), Gaps = 41/270 (15%)

Query: 86  SLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIR---SGVESRKHTPSSAIQFLTSM 140
           SL+ N+  ++ +  ++++R  ++   D   +T   ++   +G+      P S  + L+ +
Sbjct: 29  SLSPNTLDAYRTDLEKLLRFLEAEKIDILAVTLDDLQRFTAGLHDIGIHPRSQARILSGI 88

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLAF 196
           +  F + V  +Y+  +P   +E PK   +     T E++ +  S      +EG + R   
Sbjct: 89  KSFFHFLVLADYLEGDPSELLEGPKIGFKLPEVLTVEEIDKIISTVDLSTNEGQRNRAIL 148

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG----K 252
           E L   GLR S+ C   +  L  +   IK +  G+           +L+ ++P      K
Sbjct: 149 ETLYSCGLRVSELCNLKISDLYFDEGFIKVEGKGSK---------QRLVPISPRAIKEIK 199

Query: 253 ETFFINNDKQKMNATQFSIWFKAK-----------------ATKAGVNK--SAHGVRKFS 293
             F   N+K K+        F A+                 A KAG+ K  S H  R   
Sbjct: 200 NWFADRNEKWKIKKDFEDYVFLARWGNGISRIMIFHLIKELAEKAGITKNISPHTFRHSF 259

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYT 323
           AT   + GA    +    G +++   E YT
Sbjct: 260 ATHLLEGGANLRAIQCMLGHESIATTEIYT 289


>gi|323187727|gb|EFZ73028.1| phage integrase family protein [Escherichia coli RN587/1]
          Length = 341

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 45/197 (22%), Positives = 78/197 (39%), Gaps = 6/197 (3%)

Query: 36  PYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISF 95
           P   ES  + A    L     K E   + R +  T   L  ++  SA +  L+  ++  +
Sbjct: 28  PTSRESVTLTAIKDGLAALWKKYEETVNNRDRAMTFGRLWEKFLASACYSELSPRTQKDY 87

Query: 96  ESYFDQIIRKSGDFDYRKITTKHIRSGVESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVA 154
             +  +++   G      I  +HIR  ++ R + + + A    +SM  ++ W   + YV 
Sbjct: 88  LQHQKKLLAVFGKVPADSIKPEHIRRYMDKRGEQSKTQANHEKSSMSRVYSWGYERGYVK 147

Query: 155 INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR-LAFEFLLYSGLRCSDSCRAG 213
            NPC  V + K K        KE    +++  S    P  +A E       R SD     
Sbjct: 148 ANPCAGVSKFKAKNRERYVTDKE----YQAVLSVAPLPVFIAMEIAYLCAARISDVLSLK 203

Query: 214 VQHLQNNIFSIKTQKTG 230
            + + N+   I+  KTG
Sbjct: 204 WEQIGNDGIFIQQGKTG 220


>gi|227889862|ref|ZP_04007667.1| integrase-recombinase [Lactobacillus johnsonii ATCC 33200]
 gi|227849726|gb|EEJ59812.1| integrase-recombinase [Lactobacillus johnsonii ATCC 33200]
          Length = 296

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 47/226 (20%), Positives = 97/226 (42%), Gaps = 23/226 (10%)

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KSFW 186
           +S  + ++S+R  ++W +RQ+ +  +P + ++ PK +       ++E++ +      +  
Sbjct: 67  TSISRMISSLRKFYQWLLRQDIIERDPLVKIDSPKSERRLPTALSEEEVTKLLDAPDTNT 126

Query: 187 SEGSQPRLAFEFLLYSGLRCSD--SCRAGVQHLQNNIFSI--KTQKTGTIITVELP---- 238
           S G + R   E L  +G+R S+  + R G  H +  I  +  K  K   +   E+     
Sbjct: 127 SLGIRDRAMLEVLYATGMRVSELINLRTGDIHSELKIIRVLGKGSKERLVPITEVALSWL 186

Query: 239 DGFMKLLAMTPIGK-----ETFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSA--HGV 289
           + + K +    + K     +  F+NN   ++  T+ ++W K K      G+ K+   H +
Sbjct: 187 EKYQKDVRENQVLKSGQFTDVIFLNNHGHQL--TRQAVWQKIKKYCQLIGITKNVTPHTL 244

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335
           R   AT   + GA    +    G   +   + YT    +  L + N
Sbjct: 245 RHTFATHLLENGADLRVVQEILGHSDITTTQIYTNLTQKHILEVYN 290


>gi|224824183|ref|ZP_03697291.1| tyrosine recombinase XerC [Lutiella nitroferrum 2002]
 gi|224603602|gb|EEG09777.1| tyrosine recombinase XerC [Lutiella nitroferrum 2002]
          Length = 323

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 5/103 (4%)

Query: 68  PTTLKW--LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV-- 123
           P++  W   I+ Y +S      + ++R ++      +    G  D   +T + IR  V  
Sbjct: 18  PSSTSWEQRIAGYDQSLQLAGKSPHTRSAYRRDLQALAALQGAQDPATLTAQQIRLAVAR 77

Query: 124 -ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165
             ++ H   S  + L++ R  F W + QE +  NPC  +  PK
Sbjct: 78  LHAKGHIGRSLARMLSAWRGFFDWLIEQEKLPANPCHGIRPPK 120


>gi|268319602|ref|YP_003293258.1| tyrosine recombinase xerD [Lactobacillus johnsonii FI9785]
 gi|262397977|emb|CAX66991.1| tyrosine recombinase xerD [Lactobacillus johnsonii FI9785]
          Length = 302

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 52/262 (19%), Positives = 109/262 (41%), Gaps = 25/262 (9%)

Query: 95  FESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA 154
           + SY +    KS + DY  +      +  + +    +S  + ++S+R  ++W +RQ+ + 
Sbjct: 39  YLSYLEDQNEKSWEVDY--LVVDAFLATQKDKGKATTSISRMISSLRKFYQWLLRQDIIE 96

Query: 155 INPCLSVERPKRKTEGIRPWTKEDMQQF----KSFWSEGSQPRLAFEFLLYSGLRCSD-- 208
            +P + ++ PK +       ++E++ +      +    G + R   E L  +G+R S+  
Sbjct: 97  RDPLVKIDSPKSERRLPTALSEEEVTKLLDAPDTNTRLGIRDRAMLEVLYATGMRVSELI 156

Query: 209 SCRAGVQHLQNNIFSI--KTQKTGTIITVELP----DGFMKLLAMTPIGK-----ETFFI 257
           + R G  H +  I  +  K  K   +   E+     + + K +    + K     +  F+
Sbjct: 157 NLRTGDIHSELKIIRVLGKGSKERLVPITEVALSWLEKYQKDVRENQVLKSGQFTDVIFL 216

Query: 258 NNDKQKMNATQFSIWFKAK--ATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGW 313
           NN   ++  T+ ++W K K      G+ K+   H +R   AT   + GA    +    G 
Sbjct: 217 NNHGHQL--TRQAVWQKIKKYCQLIGITKNVTPHTLRHTFATHLLENGADLRVVQEILGH 274

Query: 314 KTVDQAETYTKGADRIRLGIKN 335
             +   + YT    +  L + N
Sbjct: 275 SDITTTQIYTNLTQKHILEVYN 296


>gi|167038625|ref|YP_001666203.1| phage integrase family protein [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|320117017|ref|YP_004187176.1| integrase family protein [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
 gi|166857459|gb|ABY95867.1| phage integrase family protein [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|319930108|gb|ADV80793.1| integrase family protein [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
          Length = 372

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 52/119 (43%), Gaps = 7/119 (5%)

Query: 95  FESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL---FKWAVRQE 151
            E YF   +   GD +  K+    I++     K    S        RVL    K AV  +
Sbjct: 91  IELYFKPYL---GDIELTKLKPVMIQNYYNKLKELGLSDTTINYHHRVLKSALKKAVVWQ 147

Query: 152 YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210
            ++ NPC  VE PK+    I  W+  D+++ K  + + +   L F   LY+G+R  + C
Sbjct: 148 LISKNPCDYVEPPKKNKNEITVWSINDVKKAKEIFKD-TPIYLHFMLALYTGMRIGEIC 205


>gi|154487218|ref|ZP_02028625.1| hypothetical protein BIFADO_01059 [Bifidobacterium adolescentis
           L2-32]
 gi|154085081|gb|EDN84126.1| hypothetical protein BIFADO_01059 [Bifidobacterium adolescentis
           L2-32]
          Length = 287

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 47/208 (22%), Positives = 86/208 (41%), Gaps = 14/208 (6%)

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           R    ++  + L+ +  L+++   + Y+  NP   V RPK    G    T    +Q + F
Sbjct: 60  RPAAKNTVCRNLSVVCCLYRYLCEEGYIDCNPGEHVRRPK--LYGHSDGTYLTREQARLF 117

Query: 186 WSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIIT-VELP 238
            +E    G++       LL +G R  ++    V+  HL +    ++  + G     V +P
Sbjct: 118 LTEARGMGARTDALCSLLLLTGARVGEALGLDVEDCHLNDGRPWVRFDRKGDWSQRVAIP 177

Query: 239 DGFMKLLAMTPIGKE---TFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSA 294
               + LA   IG+      F  +   ++          + A + GV + S H +R+   
Sbjct: 178 SDAAEALARL-IGERRRGAVFREDSGARLRQQTAVGIVSSVALRVGVPDISPHSLRRTFC 236

Query: 295 TISADAGATAHELMATYGWKTVDQAETY 322
           T+S DAG    ++MA  GW +    + Y
Sbjct: 237 TLSRDAGVPDRDIMAAGGWNSPQMLDYY 264


>gi|217975610|ref|YP_002360280.1| integrase family protein [Shewanella baltica OS223]
 gi|217500805|gb|ACK48857.1| integrase family protein [Shewanella baltica OS223]
          Length = 451

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 41/198 (20%), Positives = 80/198 (40%), Gaps = 9/198 (4%)

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-----GSQ 191
           L +++ +FK A+RQ +   NPC+ + + KR+    R  +  +MQ+      E     GS 
Sbjct: 163 LDTLQSVFKLALRQGHCLTNPCIGIRQNKRRVLN-RFLSVAEMQRLSVALDECEKVGGSI 221

Query: 192 PRLA--FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP 249
            + A     LL +G R S+      ++++ N   +   KTG  + + +    + +L+   
Sbjct: 222 AQCADILRLLLLTGCRLSEITFLKGEYVRGNELHLPDSKTGAKV-LYIGQAAVDILSRYH 280

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMA 309
               T      +    +   S+W + +      +   H +R   A+ +   G +   + +
Sbjct: 281 CKANTELFPMKQGASTSLVQSLWLRLRKQIGIEDVRLHDLRHTFASYAVMDGCSIPMVAS 340

Query: 310 TYGWKTVDQAETYTKGAD 327
             G K V     YT   D
Sbjct: 341 LLGHKKVTMTLRYTHVGD 358


>gi|288553931|ref|YP_003425866.1| site-specific integrase [Bacillus pseudofirmus OF4]
 gi|288545091|gb|ADC48974.1| site-specific integrase [Bacillus pseudofirmus OF4]
          Length = 348

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 47/224 (20%), Positives = 91/224 (40%), Gaps = 19/224 (8%)

Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
           KH    V+++  +P S    + +++  F + V ++    NP   V++ ++  + I   T 
Sbjct: 95  KHKPEYVQTKGLSPRSVNDHIKTLKTFFSFLVDEDLADFNPVSKVKKVRQIEKEIDVLTV 154

Query: 177 EDMQQFKS--FWSEGSQPR--LAFEFLLYSGLRCSDSC--RAGVQHLQNNIFSIKTQKTG 230
           ++++   S  +  + +  R  +   FLL +  R ++ C  R      ++N   I+ + T 
Sbjct: 155 DELKALMSVPYHRKYADFRDYVIMTFLLDTMCRINEVCTLRKRDIDFKDNTVHIRAEITK 214

Query: 231 TIITVELPDGFMKLLA---------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281
           T     +P  F K  A         +     E  F++N  +++    F    K  A KAG
Sbjct: 215 TRKGRHVP--FQKRTARLLKELIKEVDVFDSEYIFLSNYGEQLEPNHFRSRLKGFAKKAG 272

Query: 282 VNKSAHG--VRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           + ++ H    R   AT+  +AG     L    G   +     YT
Sbjct: 273 IERNVHPHLFRHTGATMFLEAGGDIRHLQLILGHADLRMTTRYT 316


>gi|213156271|ref|YP_002318691.1| phage integrase [Acinetobacter baumannii AB0057]
 gi|301346312|ref|ZP_07227053.1| phage integrase [Acinetobacter baumannii AB056]
 gi|301596472|ref|ZP_07241480.1| phage integrase [Acinetobacter baumannii AB059]
 gi|213055431|gb|ACJ40333.1| phage integrase [Acinetobacter baumannii AB0057]
          Length = 401

 Score = 41.2 bits (95), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 64/277 (23%), Positives = 117/277 (42%), Gaps = 42/277 (15%)

Query: 19  GKIIYYFR---KGHGRRIRL-PYPH----ESTFIPAYMSALT--GSTPKREYINSPRK-- 66
           GK+++  R    G   R+ L  YPH    ++    + M +L   G  PK E     +K  
Sbjct: 36  GKVVFQLRYRFAGKAERLDLGTYPHLSLKDARIKASEMRSLLDKGQNPKVEERVKQQKYI 95

Query: 67  KPTTLKWLISEYRKS--AHWGSLAVNSRISFESY-FDQIIRKSGDFDYRKITTKHIRSGV 123
           + +TLK +  ++ +S      + A + R SFE + FD+I    GD    +IT +   + +
Sbjct: 96  EASTLKEVFDDWYESYCIKKKTSAKDIRRSFEHHVFDEI----GDLPIERITLQQWLAIL 151

Query: 124 ES-RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK----RKTEGIRPWTKED 178
           E   +  PS A + LT+ + + KWA ++E V +N    +   +     K  G R  T E+
Sbjct: 152 EELAEEVPSIAERILTNAKQVLKWAKKREIVEVNVLSDIYAKEDLGIEKNRGKRVLTDEE 211

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGV--QHLQNN--------IFSIKTQK 228
           +      W    + +   +  ++  L     CR G   + L+++        I  ++  K
Sbjct: 212 ITM---VWKAIDESKALLKNKIFLKLCLMYGCRNGELRKALKSDFDLKRKVWIVPVENNK 268

Query: 229 TG-----TIITVELPDGFMKLLAMTPIGKETFFINND 260
            G      I+   LP+    ++    +    +F+ ND
Sbjct: 269 VGKKTGREIVRPILPEMEELIVEAMSLNDSEYFLTND 305


>gi|126175914|ref|YP_001052063.1| phage integrase family protein [Shewanella baltica OS155]
 gi|125999119|gb|ABN63194.1| phage integrase family protein [Shewanella baltica OS155]
          Length = 451

 Score = 41.2 bits (95), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 41/198 (20%), Positives = 80/198 (40%), Gaps = 9/198 (4%)

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-----GSQ 191
           L +++ +FK A+RQ +   NPC+ + + KR+    R  +  +MQ+      E     GS 
Sbjct: 163 LDTLQSVFKLALRQGHCLTNPCIGIRQNKRRVLN-RFLSVAEMQRLSVALDECEEVGGSI 221

Query: 192 PRLA--FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP 249
            + A     LL +G R S+      ++++ N   +   KTG  + + +    + +L+   
Sbjct: 222 AQCADILRLLLLTGCRLSEITFLKGEYVRGNELHLPDSKTGAKV-LYIGQAAVDILSRYH 280

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMA 309
               T      +    +   S+W + +      +   H +R   A+ +   G +   + +
Sbjct: 281 CKANTELFPMKQGASTSLVQSLWLRLRKQIGIEDVRLHDLRHTFASYAVMDGCSIPMVAS 340

Query: 310 TYGWKTVDQAETYTKGAD 327
             G K V     YT   D
Sbjct: 341 LLGHKKVTMTLRYTHVGD 358


>gi|77919114|ref|YP_356929.1| site-specific recombinase [Pelobacter carbinolicus DSM 2380]
 gi|77545197|gb|ABA88759.1| tyrosine recombinase XerD subunit [Pelobacter carbinolicus DSM
           2380]
          Length = 295

 Score = 41.2 bits (95), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 45/220 (20%), Positives = 88/220 (40%), Gaps = 17/220 (7%)

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
           S ++ R  +  S  + L S+R+  ++ + +     NP   V  PK   +  +  T ++++
Sbjct: 58  SALKERGLSARSRARKLVSLRMFHRFLLAENLATTNPAAQVAAPKSFAKLPQILTPDEVE 117

Query: 181 QFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-----FSIKTQKTGT 231
              S     +    + +   E L  +GLR S+     +Q LQ ++     F  + ++   
Sbjct: 118 SLLSAPGNTTCFDLRDKAMLEILYATGLRVSELVGLTLQDLQLDVGYLTAFGKRAKQRIV 177

Query: 232 IITVELPDGFMKLLA------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS 285
            +     +  ++ L+         +G    F+N     +    F    K +A +AG+NK+
Sbjct: 178 PLGDAAREAVLEYLSHGRGELAGEVGSGFLFLNRSGNGLTRQGFWKMMKRRAMEAGINKN 237

Query: 286 A--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
              H +R   AT   D GA    + A  G   +   + YT
Sbjct: 238 ITPHTLRHSFATHLLDNGADLRAVQAMLGHADISTTQIYT 277


>gi|260856279|ref|YP_003230170.1| integrase [Escherichia coli O26:H11 str. 11368]
 gi|260868958|ref|YP_003235360.1| putative integrase [Escherichia coli O111:H- str. 11128]
 gi|257754928|dbj|BAI26430.1| integrase [Escherichia coli O26:H11 str. 11368]
 gi|257765314|dbj|BAI36809.1| putative integrase [Escherichia coli O111:H- str. 11128]
 gi|323156505|gb|EFZ42659.1| integrase [Escherichia coli EPECa14]
 gi|323176845|gb|EFZ62435.1| integrase [Escherichia coli 1180]
          Length = 356

 Score = 41.2 bits (95), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 47/220 (21%), Positives = 87/220 (39%), Gaps = 16/220 (7%)

Query: 93  ISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQ 150
           + + S    I RK  D     I+TK + + + +   +   +SA    +++  +F+ A+ +
Sbjct: 98  LDYASKIRAIRRKLPDKPLADISTKEVAAMLNTYVAEGKAASAKLIRSTLVDVFREAIAE 157

Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210
            +VA NP  +    K +    R    E +  + +        RLA +  + +G R  D C
Sbjct: 158 GHVATNPVTATRTAKSEVRRSRLTANEYVAIYHAAEPLPIWLRLAMDLAVVTGQRVGDLC 217

Query: 211 RAGVQHLQNNIFSIKTQKTGTIITVELP---DGFMKLLAMT------PIGKETFFINNDK 261
           R     + +N   I+  KTG  + + L    D     LA T        G ET   +   
Sbjct: 218 RMKWSDINDNHLHIEQGKTGAKLAIPLTLTIDALNISLADTLQKCREASGSETIIASTHH 277

Query: 262 QKMNATQFSIWFKAKATKAGVNKSA-----HGVRKFSATI 296
           + ++    S +F      +G++        H +R  SA +
Sbjct: 278 EPLSPKTVSKYFTKARNASGLSFDGDPPTFHELRSLSARL 317


>gi|193066330|ref|ZP_03047380.1| integrase [Escherichia coli E22]
 gi|192926037|gb|EDV80681.1| integrase [Escherichia coli E22]
          Length = 357

 Score = 41.2 bits (95), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 33/147 (22%), Positives = 64/147 (43%), Gaps = 2/147 (1%)

Query: 93  ISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQ 150
           + + S    I RK  D     I+TK + + + +   +   +SA    +++  +F+ A+ +
Sbjct: 98  LDYASKIRAIRRKLPDKPLTDISTKEVAAMLNTYVAEGKAASAKLIRSTLVDVFREAIAE 157

Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210
            +VA NP  +    K +    R    E ++ + +        RLA +  + +G R  D C
Sbjct: 158 GHVATNPVTATRTAKSEVRRSRLTANEYVEIYHAAEPLPIWLRLAMDLAVVTGQRVGDLC 217

Query: 211 RAGVQHLQNNIFSIKTQKTGTIITVEL 237
           R     + +N   I+  KTG  + + L
Sbjct: 218 RMKWSDINDNHLHIEQSKTGAKLAIPL 244


>gi|283852933|ref|ZP_06370193.1| tyrosine recombinase XerD [Desulfovibrio sp. FW1012B]
 gi|283571691|gb|EFC19691.1| tyrosine recombinase XerD [Desulfovibrio sp. FW1012B]
          Length = 309

 Score = 41.2 bits (95), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 55/224 (24%), Positives = 94/224 (41%), Gaps = 25/224 (11%)

Query: 118 HIRS-GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
           H+R+ G++SR     S  + L+++R  F +A  ++++  +P   +E PK         ++
Sbjct: 69  HLRTRGLQSR-----SLARHLSALRGFFAFAAAEKWLPESPAALIENPKLPRLLPDVLSR 123

Query: 177 EDMQQF----KSFWSEGSQPRLAFEFLLYSGLRCSD--SCRAGVQHLQNNIFSI--KTQK 228
           ED+ +      +    G + R   E L  +GLR S+      G    Q  +  +  K  K
Sbjct: 124 EDVARLLDAPDTATPLGYRDRTMLELLYAAGLRVSELVGLTLGDYDAQAGLLRVFGKGAK 183

Query: 229 TGTIITVELPDGFMKLLAMTPIG----KETF-FINNDKQKMNATQFSIW--FKAKATKAG 281
                   L   F+    +T  G    +E F F+N   Q +  ++ ++W   KA A  AG
Sbjct: 184 ERLTPIHALAREFLSTYILTMRGAFHPREQFIFLNRSGQGL--SRQAVWKKIKAHALAAG 241

Query: 282 VNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           V+   S H +R   AT   + GA    +    G   +   E YT
Sbjct: 242 VSTRISPHSLRHSFATHLLEGGADLRTVQMLLGHADISATEIYT 285


>gi|167994916|ref|ZP_02576006.1| site-specific recombinase, phage integrase family [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|194444962|ref|YP_002040289.1| site-specific recombinase, phage integrase family [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
 gi|194403625|gb|ACF63847.1| site-specific recombinase, phage integrase family [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
 gi|205327312|gb|EDZ14076.1| site-specific recombinase, phage integrase family [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
          Length = 339

 Score = 41.2 bits (95), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 74/166 (44%), Gaps = 25/166 (15%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTF---IPAYMSAL--TGSTPKR 58
            ++LPP V+K RTR     YY++         P   E+     I   MSAL       +R
Sbjct: 10  DVKLPPRVSKTRTR-----YYYK---------PTSRETVTLGPITLTMSALWKRYEEERR 55

Query: 59  EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH 118
            Y +       T + L   + KSA++  LA+ ++  +  +  +++   G      I  + 
Sbjct: 56  NYSDV-----MTFEKLWKMFLKSAYYTELAIRTQRDYLQHQKKLLAVFGKVKADVIKPED 110

Query: 119 IRSGVESRK-HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163
           +R  ++ R   + + A Q ++SM  +++W   + YV  NPC  V +
Sbjct: 111 VRQFMDRRGLQSKNQANQEMSSMSRVYRWGYERGYVKGNPCAGVSK 156


>gi|319788822|ref|YP_004090137.1| integrase family protein [Ruminococcus albus 7]
 gi|315450689|gb|ADU24251.1| integrase family protein [Ruminococcus albus 7]
          Length = 359

 Score = 41.2 bits (95), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 56/118 (47%), Gaps = 6/118 (5%)

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
             L  M+ +FK+A R EY   N    +  PK++++ +R  TK++  + KS+ +E  +P L
Sbjct: 130 DILVLMKSMFKYAAR-EYGFKNVFDGITMPKKQSKEVRLLTKDEENKLKSYITE--KPTL 186

Query: 195 A---FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP 249
           A       +Y+GLR  + C      +  +  ++  +KT   I      G  KL+   P
Sbjct: 187 AGMGIALTMYTGLRVGELCALTWADIDLDYRTLTVKKTMQRIQNHEGGGKTKLIISEP 244


>gi|297516448|ref|ZP_06934834.1| Phage integrase family protein [Escherichia coli OP50]
          Length = 356

 Score = 41.2 bits (95), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 49/215 (22%), Positives = 83/215 (38%), Gaps = 11/215 (5%)

Query: 25  FRKGHGRRIRLPYPHESTFIPAYMSALTGST--PKREYINSPRKKPTTLKWLISEYRKSA 82
           F  G  RRI +     +  I A +   +G    P    INS      TL   +  Y K  
Sbjct: 35  FGLGRDRRIAI-----TEAIQANIELFSGHKHKPLTARINS--DNSVTLHSWLDRYEKIL 87

Query: 83  HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSM 140
               +   + I++ S    I R   D     ITTK I + +     K   +SA    +++
Sbjct: 88  ASREIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAMLNGYIDKGKAASAKLIRSTL 147

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200
              F+ A+ + ++  NP  +    K +    R    E ++ +++  S     RLA E  +
Sbjct: 148 SDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEYLKIYQAAESSPCWLRLAMELAV 207

Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
            +G R  D C      + +    ++  KTG  I +
Sbjct: 208 VTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAI 242


>gi|327438335|dbj|BAK14700.1| integrase [Solibacillus silvestris StLB046]
          Length = 280

 Score = 40.8 bits (94), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 45/243 (18%), Positives = 97/243 (39%), Gaps = 12/243 (4%)

Query: 99  FDQIIRKSGDFDYRKITTKHIRSG-VESRKHT-PSSAIQFLTSMRVLFKWAVRQEYVAIN 156
           ++ ++R  GD D    +T+ ++   ++S  H  PSS    +  ++ LF+W+  + Y+  N
Sbjct: 31  YNLLLRFFGDIDMNGFSTEKLKEYLIQSGNHLKPSSLGHRIRCVKSLFRWSHEEGYILKN 90

Query: 157 PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216
           P   ++ PK      +  ++ +++  +    + +     FEF+  +G R  +  +     
Sbjct: 91  PAAKLKEPKLGKRIPKFLSELEIEHLRE-ACQTTMENALFEFMYSTGCRIGEVVKLDRHD 149

Query: 217 LQNNIFSIKTQKTG-----TIITVELPDGFMKLLAMTPIGKETFFINND--KQKMNATQF 269
           +     S+  Q  G                 + L          FI +   K++M+    
Sbjct: 150 IDFRTNSVIVQGKGDKEREVYFNTRCSIWLKRYLDEREDDDPCLFITDRKPKRRMSIDNL 209

Query: 270 SIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
               K  + +AG+ K    H +R   AT   + GA    + +  G +  +  + Y + + 
Sbjct: 210 RYIIKRVSNRAGIKKCIHPHQLRHSYATHMINNGAPIDVIQSLLGHEKSETTKIYAQLSG 269

Query: 328 RIR 330
           +IR
Sbjct: 270 KIR 272


>gi|320641462|gb|EFX10896.1| Site-specific recombinase, phage integrase family protein
           [Escherichia coli O157:H7 str. G5101]
          Length = 229

 Score = 40.8 bits (94), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 44/197 (22%), Positives = 79/197 (40%), Gaps = 6/197 (3%)

Query: 36  PYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISF 95
           P   ES  + A    L     K E   + R +  T   L  ++  SA++  L+  ++  +
Sbjct: 28  PTSRESVTLTAIEDGLAALWKKYEETVNHRDRAMTFGRLWEKFLASAYYSELSPRTQKDY 87

Query: 96  ESYFDQIIRKSGDFDYRKITTKHIRSGVESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVA 154
             +  +++   G      +  +HIR  ++ R + + + A    +SM  ++ W   + YV 
Sbjct: 88  LQHQKKLLAVFGKVLADSVKPEHIRRYMDKRGEQSKTQANHEKSSMSRVYSWGYERGYVK 147

Query: 155 INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR-LAFEFLLYSGLRCSDSCRAG 213
            NPC  V + K K        KE    +++  S    P  +A E       R SD     
Sbjct: 148 ANPCAGVSKFKAKNRERYVTDKE----YQAVLSVAPLPVFIAMEIAYLCAARVSDVLSLK 203

Query: 214 VQHLQNNIFSIKTQKTG 230
            + + N+   I+  KTG
Sbjct: 204 WEQIGNDGIFIQQGKTG 220


>gi|313113306|ref|ZP_07798907.1| site-specific recombinase, phage integrase family [Faecalibacterium
           cf. prausnitzii KLE1255]
 gi|310624374|gb|EFQ07728.1| site-specific recombinase, phage integrase family [Faecalibacterium
           cf. prausnitzii KLE1255]
          Length = 416

 Score = 40.8 bits (94), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 5/83 (6%)

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP--WTKEDMQQFKSF 185
           +T ++ I +       FK AVR++Y+  NP L V+RPK+ +   RP  ++K+++QQ    
Sbjct: 158 YTTNTVIHYHAIFGKAFKDAVRKDYLETNPMLKVDRPKKNS--FRPNFYSKDEVQQLLEV 215

Query: 186 WSEGSQPRLAFEFLLYSGLRCSD 208
            S+     L      Y GLR S+
Sbjct: 216 -SQDDPLHLCILITAYYGLRRSE 237


>gi|322435169|ref|YP_004217381.1| integrase family protein [Acidobacterium sp. MP5ACTX9]
 gi|321162896|gb|ADW68601.1| integrase family protein [Acidobacterium sp. MP5ACTX9]
          Length = 310

 Score = 40.8 bits (94), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 52/112 (46%), Gaps = 13/112 (11%)

Query: 118 HIR---SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
           HIR   S + +R    SS  + L S+R  FKW  ++  V  NP L V  PKR     R  
Sbjct: 56  HIRGYLSVLYARGLEKSSMARALASVRSWFKWLAKEGKVEQNPALLVSTPKRAQHLPRVP 115

Query: 175 TKED----MQQFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218
           + E+    M   +S     W E  + R+ FE L   G+R S+ C   + ++Q
Sbjct: 116 SAEEVNRVMDSLESADGGTWPE--RDRVIFELLYGCGIRNSELCGLDMGNVQ 165


>gi|317055373|ref|YP_004103840.1| integrase family protein [Ruminococcus albus 7]
 gi|315447642|gb|ADU21206.1| integrase family protein [Ruminococcus albus 7]
          Length = 396

 Score = 40.8 bits (94), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 71/170 (41%), Gaps = 33/170 (19%)

Query: 107 GDFDYRKITTKHIRSGVES-----------RKHTPSSAIQFLTSMRVLFKWAVRQEYVAI 155
           G     KIT + I++ V S           +   P +    L+ +  +F + V+   ++ 
Sbjct: 105 GHLRMDKITPRQIQAFVNSLSKEGANERTGKPLAPKTIRHNLSFVSDVFAYGVKMGVISD 164

Query: 156 NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-EGSQPRLAFEFLLYSGLRCSDSCRAGV 214
           NPC  V  PK +    + +T E +Q+F S  + E  + R  F  ++YSG R  +    G+
Sbjct: 165 NPCAKVTLPKNEQTEKKIYTPEQVQRFLSLLNDEPLKYRTFFNLMIYSGFRRGEML--GL 222

Query: 215 Q----HLQNNIFSIK-----TQKTGTII----------TVELPDGFMKLL 245
           +      +NNI S++     T K G             T++ P   M +L
Sbjct: 223 EWKDVDFENNIISVRRTSNYTAKKGVYTDTTKTRKSQRTLKFPQAIMDML 272


>gi|191166609|ref|ZP_03028438.1| integrase [Escherichia coli B7A]
 gi|190903414|gb|EDV63134.1| integrase [Escherichia coli B7A]
          Length = 357

 Score = 40.8 bits (94), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 33/147 (22%), Positives = 64/147 (43%), Gaps = 2/147 (1%)

Query: 93  ISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQ 150
           + + S    I RK  D     I+TK + + + +   +   +SA    +++  +F+ A+ +
Sbjct: 98  LDYASKIRAIRRKLPDKPLTDISTKEVAAMLNTYVAEGKAASAKLIRSTLVDVFREAIAE 157

Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210
            +VA NP  +    K +    R    E ++ + +        RLA +  + +G R  D C
Sbjct: 158 GHVATNPVTATRTAKSEVRRSRLTANEYVEIYHAAEPLPIWLRLAMDLAVVTGQRVGDLC 217

Query: 211 RAGVQHLQNNIFSIKTQKTGTIITVEL 237
           R     + +N   I+  KTG  + + L
Sbjct: 218 RMKWSDINDNHLHIEQSKTGAKLAIPL 244


>gi|134096115|ref|YP_001101190.1| tyrosine recombinase xerC [Herminiimonas arsenicoxydans]
          Length = 296

 Score = 40.8 bits (94), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 33/123 (26%), Positives = 50/123 (40%), Gaps = 13/123 (10%)

Query: 109 FDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168
           F  RK   +    G+ +R     S  + L++ R  F W   Q  VA NP   ++ PKR  
Sbjct: 35  FQIRKFAAQLHAKGLNAR-----SIARKLSAWRGFFTWLSEQNAVASNPVDGIKAPKRNK 89

Query: 169 EGIRPWTKEDMQQFKSFWSEGSQP--------RLAFEFLLYSGLRCSDSCRAGVQHLQNN 220
              +    +D  +  S  S G           R  FE L  SGLR S+     +++ Q N
Sbjct: 90  PLPKALAADDAVRLVSSNSPGKNADATMQLCNRAMFELLYSSGLRASELVGLDLKYAQEN 149

Query: 221 IFS 223
            ++
Sbjct: 150 RYT 152


>gi|310822341|ref|YP_003954699.1| Tyrosine recombinase XerC [Stigmatella aurantiaca DW4/3-1]
 gi|309395413|gb|ADO72872.1| Tyrosine recombinase XerC [Stigmatella aurantiaca DW4/3-1]
          Length = 300

 Score = 40.8 bits (94), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 48/224 (21%), Positives = 88/224 (39%), Gaps = 24/224 (10%)

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK--RKTEGIRP----WT 175
           G  S  H P+S  + L S++  +K+ VRQ+ ++ +P   V+ PK  +    + P    + 
Sbjct: 61  GTLSVDHAPASRGRRLASIKSFYKYLVRQKLLSASPAKLVKSPKLPKSLPKVLPVDEVFA 120

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---I 232
             +M   K+    G + R   E L   GLR S+ C   +  +  +   ++    G    +
Sbjct: 121 ILEMPSLKTVL--GLRDRAILEILYGGGLRISELCGLNLLDVDRSGRIVRVMGKGGKERL 178

Query: 233 ITVELP-----DGFM----KLLAMTPIGK--ETFFINNDKQKMNATQFSIWFKAKATKAG 281
             V  P     + ++    +LLA    G+  E  F+N    ++     +        K  
Sbjct: 179 CPVNEPSIRALEAYLARRGELLATPHAGQDPEAMFLNYRGGRLTPRSIARHLDTYVVKCA 238

Query: 282 VNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           + +  S H +R   AT     GA    +    G  ++   + YT
Sbjct: 239 LTRKVSPHALRHSFATHLLGGGADVRSIQELLGHASLSTTQRYT 282


>gi|210616044|ref|ZP_03290916.1| hypothetical protein CLONEX_03135 [Clostridium nexile DSM 1787]
 gi|210149952|gb|EEA80961.1| hypothetical protein CLONEX_03135 [Clostridium nexile DSM 1787]
          Length = 400

 Score = 40.8 bits (94), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 8/97 (8%)

Query: 97  SYFDQIIRKS-GDFDYRKITTKHIRSGVESR-----KHTPSSAIQFLTSMRVLFKWAVRQ 150
           SY++  ++ S G    + I T H++  +         H   S I+F+ S   +   AV  
Sbjct: 94  SYYNSRVKNSIGKMYLQDIKTYHVQKFLNDLIDSGLAHGTVSNIRFMLSD--MLDKAVLS 151

Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           EY+  NPC+ VE PK   +  R  T+E+ ++F +F S
Sbjct: 152 EYIRKNPCIGVEMPKEVKKERRVLTREEQEKFFTFAS 188


>gi|188586285|ref|YP_001917830.1| tyrosine recombinase XerD subunit [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179350972|gb|ACB85242.1| tyrosine recombinase XerD subunit [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 295

 Score = 40.8 bits (94), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 43/210 (20%), Positives = 88/210 (41%), Gaps = 29/210 (13%)

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKT---EGIRP------WTKEDMQQFKSFWS 187
           + S+R  F++ +++  ++ NP   +E PK++    E + P        + D   FK    
Sbjct: 74  IASVRSFFQFLLQEGMISENPSTDLETPKQEKKLPEILSPQEVDKLLNQPDTTDFK---- 129

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
            G + +   E L  +G+R S+     V+H+ +N   I  +  G    + +P G M + ++
Sbjct: 130 -GKRDKAMLEVLYATGMRVSELISLNVEHVDSNNGYILCKGKGDKERI-VPLGKMAIKSV 187

Query: 248 TP------------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFS 293
           +             + +   F+N+  ++++   F    K  A K G+ +  + H +R   
Sbjct: 188 SDYISKSRPQLRKNLSEPALFLNHHGKRLSRQGFWKILKKYAEKIGIKQKITPHTLRHSF 247

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYT 323
           AT   + GA    +    G   +   + YT
Sbjct: 248 ATHLLENGADLRAVQEMLGHSDISTTQIYT 277


>gi|307307476|ref|ZP_07587210.1| integrase family protein [Shewanella baltica BA175]
 gi|306910151|gb|EFN40585.1| integrase family protein [Shewanella baltica BA175]
          Length = 451

 Score = 40.8 bits (94), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 41/198 (20%), Positives = 80/198 (40%), Gaps = 9/198 (4%)

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-----GSQ 191
           L +++ +FK A+RQ +   NPC+ + + KR+    R  +  +MQ+      E     GS 
Sbjct: 163 LDTLQSVFKLALRQGHCLTNPCIGIRQNKRRVLN-RFLSVAEMQRLSVALDECETVGGSI 221

Query: 192 PRLA--FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP 249
            + A     LL +G R S+      ++++ N   +   KTG  + + +    + +L+   
Sbjct: 222 AQCADILRLLLLTGCRLSEITFLKGEYVRGNELHLPDSKTGAKV-LYIGQAAVDILSRYH 280

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMA 309
               T      +    +   S+W + +      +   H +R   A+ +   G +   + +
Sbjct: 281 CKANTELFPMKQGASTSLVQSLWLRLRKQIGIEDVRLHDLRHTFASYAVMDGCSIPMVAS 340

Query: 310 TYGWKTVDQAETYTKGAD 327
             G K V     YT   D
Sbjct: 341 LLGHKKVTMTLRYTHVGD 358


>gi|193222420|emb|CAL63069.2| Tyrosine recombinase xerC [Herminiimonas arsenicoxydans]
          Length = 318

 Score = 40.8 bits (94), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 33/123 (26%), Positives = 50/123 (40%), Gaps = 13/123 (10%)

Query: 109 FDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168
           F  RK   +    G+ +R     S  + L++ R  F W   Q  VA NP   ++ PKR  
Sbjct: 57  FQIRKFAAQLHAKGLNAR-----SIARKLSAWRGFFTWLSEQNAVASNPVDGIKAPKRNK 111

Query: 169 EGIRPWTKEDMQQFKSFWSEGSQP--------RLAFEFLLYSGLRCSDSCRAGVQHLQNN 220
              +    +D  +  S  S G           R  FE L  SGLR S+     +++ Q N
Sbjct: 112 PLPKALAADDAVRLVSSNSPGKNADATMQLCNRAMFELLYSSGLRASELVGLDLKYAQEN 171

Query: 221 IFS 223
            ++
Sbjct: 172 RYT 174


>gi|296133056|ref|YP_003640303.1| tyrosine recombinase XerC [Thermincola sp. JR]
 gi|296031634|gb|ADG82402.1| tyrosine recombinase XerC [Thermincola potens JR]
          Length = 302

 Score = 40.8 bits (94), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 42/206 (20%), Positives = 75/206 (36%), Gaps = 19/206 (9%)

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KSFWSEGSQP 192
           L +MR  F++  R+E +  NP + V  PK +    +   ++D++      +     G + 
Sbjct: 79  LAAMRTFFRFLCREEVITRNPLIEVATPKVEKRLPQFLYQDDIRNLIEAPERNTPRGLRD 138

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-------------TIITVELPD 239
           R   E L  SG+R S+     +  +  N   ++    G               +   L  
Sbjct: 139 RAILETLYASGIRVSELVNLDMTDIDLNTGYVRVMGKGAKERVVPLGQFAINALKAYLTH 198

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS 297
           G  +L   +    E  F+N   Q+++             K  + +  S H +R   AT  
Sbjct: 199 GRTRLACRSKEPSEAVFLNKAGQRISVRSIRDIVNKYVRKISIRQRVSPHIIRHSFATHL 258

Query: 298 ADAGATAHELMATYGWKTVDQAETYT 323
            DAGA    +    G   +   + YT
Sbjct: 259 LDAGADLRTVQELLGHVKMSTTQIYT 284


>gi|312200217|ref|YP_004020278.1| integrase family protein [Frankia sp. EuI1c]
 gi|311231553|gb|ADP84408.1| integrase family protein [Frankia sp. EuI1c]
          Length = 310

 Score = 40.8 bits (94), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 42/184 (22%), Positives = 78/184 (42%), Gaps = 24/184 (13%)

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA- 195
           L S+  ++ +A+ +  +  +P   V+RPK       P    D  +     ++   PR + 
Sbjct: 94  LASVASVYAYALDEHLIDASPLAKVKRPKTTDRHQAPGMTLDQARAFLAAADADGPRTSA 153

Query: 196 -FEFLLYSGLRCSDSCRAGVQHLQNN----IFSI--KTQKTGTII----TVELPDGFMKL 244
               LL +GLR S++  A V  L +     +  I  K  K  T++    T    D ++  
Sbjct: 154 LMRLLLANGLRVSEAIEADVDQLGHERGHRVLRIVGKGSKAATVVLAPPTARAIDAYLAG 213

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIW--FKAKATKAGVNK---SAHGVRKFSATISAD 299
               P+     F+     +++  + ++W   +  A +AG+     S H +R  S T+  D
Sbjct: 214 RTAGPL-----FVTATGNRLD--RPAVWRTIRRLAKRAGLGDLQLSPHSLRATSVTLLLD 266

Query: 300 AGAT 303
           AGA+
Sbjct: 267 AGAS 270


>gi|330970597|gb|EGH70663.1| prophage PSPPH06, site-specific recombinase phage integrase family
           protein [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 382

 Score = 40.8 bits (94), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 26/109 (23%), Positives = 51/109 (46%), Gaps = 9/109 (8%)

Query: 70  TLKWLISEYRKSAHWGSLA-------VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122
           +L++L  E+ +S  +  L+         SR    +Y  ++ +  G+ D +K T   ++  
Sbjct: 76  SLQYLCDEFHRSQQFKELSKKTQDDYCYSREVLVAYPTKLDKPLGELDVKKFTPAMVQRI 135

Query: 123 VE--SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
           ++  +   TPS A   L  +R L +W   + +V  NP   +E PK + +
Sbjct: 136 IDKIAEAGTPSKAAHALRYLRRLMQWGRNRGFVTDNPAKGIEAPKERKQ 184


>gi|254440879|ref|ZP_05054372.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
 gi|198250957|gb|EDY75272.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
          Length = 244

 Score = 40.8 bits (94), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 40/201 (19%), Positives = 88/201 (43%), Gaps = 21/201 (10%)

Query: 110 DYRKITTKHIRSGVESRKH-----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP 164
           D+ ++    I   +  R+H     +PS+A   L S R ++  A R   +   P +++E  
Sbjct: 11  DWMRLPLDEISKAMTVRRHHDMAGSPSAANHVLRSFRTIYNHARRTGDLPECPTMAIEWF 70

Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222
           + K +G      ED++ ++    +   P  R+ +E +L++GLR ++      + +Q +  
Sbjct: 71  EDKPDG---RIIEDLKHWRKTIDDLPNPIHRIFYELILFTGLRKTEVFTLKWEQIQEDRI 127

Query: 223 SIKTQKTGTIITVELPDGFMKLLA-MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281
            +   K G    + +     ++LA + P+ ++  F +   +  + T        +  +  
Sbjct: 128 HLPMTKNGRSFDLPISQLHHEILAPLRPLSRDWVFPSPKSESGHIT--------RPERLK 179

Query: 282 VNKSAHGVRKFSATISADAGA 302
            N   H  R+  AT++ +AG 
Sbjct: 180 YNPHMH--RRTFATVAMEAGV 198


>gi|220931948|ref|YP_002508856.1| phage integrase family protein [Halothermothrix orenii H 168]
 gi|219993258|gb|ACL69861.1| phage integrase family protein [Halothermothrix orenii H 168]
          Length = 310

 Score = 40.8 bits (94), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 34/144 (23%), Positives = 63/144 (43%), Gaps = 20/144 (13%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR----SGVESRKHTP 130
           + EY +  +   + + + + F++          DF   KI   HI       +    + P
Sbjct: 29  VKEYERDLNLFYIYLTNEMGFKN----------DFSLDKINKYHIAEFLGDTILVHDNAP 78

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK-EDMQQF----KSF 185
           ++  + L S+R  FK+ V+ EY+ +NP  ++E  K +      + K  D Q++    K  
Sbjct: 79  TTRNRKLYSIRSFFKFLVKYEYIKVNPAATIEASKTEVRAEPIYMKLNDAQKYIETIKKH 138

Query: 186 WSEGSQPRLAF-EFLLYSGLRCSD 208
                +  LA  +  LY+GLR S+
Sbjct: 139 GGVNLKRDLAIVKLFLYAGLRVSE 162


>gi|237711591|ref|ZP_04542072.1| integrase [Bacteroides sp. 9_1_42FAA]
 gi|229454286|gb|EEO60007.1| integrase [Bacteroides sp. 9_1_42FAA]
          Length = 380

 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 52/214 (24%), Positives = 84/214 (39%), Gaps = 21/214 (9%)

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-PWTKEDMQQFKSFWS 187
           +P +A  + T++R     AVR++ +  NP   +E     TE I+ P +K D    +    
Sbjct: 161 SPKTAHSYYTTLRTALNEAVREKLIESNPWYKLE----MTEKIKVPESKRDFLTIEEIKK 216

Query: 188 EGSQP------RLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVEL 237
             + P      R A+ F  + GLR SD  +   + +  +    + S+   KT   + + L
Sbjct: 217 MIATPFFNEHVRQAYLFSCFCGLRISDIRKLRWRDISISGGQWLVSVVMTKTTNPVYIPL 276

Query: 238 PDGFMKLL-AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSA 294
               +K L        E           NA    I  K  A KAGV K+   H  R   A
Sbjct: 277 SSQAVKWLPERKDCAPEDLVFGG---LPNAGNLCISLKNWADKAGVKKNVTFHTARHSCA 333

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADR 328
            +    GA  + +    G ++V   + Y K  D+
Sbjct: 334 VLLLTLGADIYTVSKILGHRSVRATQVYAKIVDK 367


>gi|228476153|ref|ZP_04060861.1| tyrosine recombinase XerD [Staphylococcus hominis SK119]
 gi|314936376|ref|ZP_07843723.1| tyrosine recombinase XerD [Staphylococcus hominis subsp. hominis
           C80]
 gi|228269976|gb|EEK11456.1| tyrosine recombinase XerD [Staphylococcus hominis SK119]
 gi|313654995|gb|EFS18740.1| tyrosine recombinase XerD [Staphylococcus hominis subsp. hominis
           C80]
          Length = 295

 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 45/214 (21%), Positives = 91/214 (42%), Gaps = 21/214 (9%)

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF--- 185
           +  S  +F++++R   ++A+R++Y A +P + +E PK + +       E++ Q       
Sbjct: 66  SAKSMARFISTIRNFHQFALREKYAAKDPTVLIETPKYEKKLPDVLEVEEVLQLLETPDL 125

Query: 186 -WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---II-----TVE 236
               G + R   E L  +G+R S+  +  ++ +   +  ++    G    II      +E
Sbjct: 126 NKKNGYRDRTILELLYATGMRVSELIQINIEDINLIMGFVRVFGKGNKERIIPLGDTVIE 185

Query: 237 LPDGFMKLLAMTPIGK---ETFFINNDKQKMNATQFSIW--FKAKATKAGVNKSA--HGV 289
             D +++ +    + K      F+N   + +  T+  IW   K    KA +NK+   H +
Sbjct: 186 FLDTYLEKVRPQLLKKTITNVLFLNMHGRPL--TRQGIWKMIKQYGLKANINKTLTPHTL 243

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           R   AT   + GA    +    G   +   + YT
Sbjct: 244 RHSFATHLLENGADLRAVQEMLGHSDISTTQLYT 277


>gi|158522508|ref|YP_001530378.1| integrase family protein [Desulfococcus oleovorans Hxd3]
 gi|158511334|gb|ABW68301.1| integrase family protein [Desulfococcus oleovorans Hxd3]
          Length = 308

 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 47/220 (21%), Positives = 90/220 (40%), Gaps = 21/220 (9%)

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK--RKTEGIRPWTKEDMQ 180
           +  +K   S+  + L+ +R  F++  ++  +  NP  +V  PK  RK       + +DM 
Sbjct: 73  LHKKKMDKSTVSRKLSVLRSFFRYLEKRGIMTGNPARAVLSPKIGRKIPAF--LSVDDMF 130

Query: 181 QFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNN--IFSI-------KTQ 227
           +     +  +    + R  FE +  +G+R S++      H++ +  +F +       +  
Sbjct: 131 RLLDASTGDTLLDLRNRAIFETIYSTGIRVSEAAGLDAAHVETDERVFRVYGKGAKERVV 190

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAG--VN 283
             G      +     +L   T IG E    F+N ++ ++         K  A + G  V+
Sbjct: 191 PVGKKALASIAAYRTRLFEETGIGVEEGPLFLNKNRGRLTTRSMDRILKQTALRCGLTVS 250

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
            S H +R   AT   DAGA    +    G K++   + YT
Sbjct: 251 LSPHALRHSFATHMLDAGADLRTVQEILGHKSLSTTQKYT 290


>gi|323967241|gb|EGB62665.1| bacteriophage lambda integrase domain-containing protein
           [Escherichia coli M863]
          Length = 357

 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 33/147 (22%), Positives = 64/147 (43%), Gaps = 2/147 (1%)

Query: 93  ISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQ 150
           + + S    I RK  D     I+TK + + + +   +   +SA    +++  +F+ A+ +
Sbjct: 98  LDYASKIRAIRRKLPDKPLADISTKEVATMLNTYVAEGKAASAKLIRSTLVDVFREAIAE 157

Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210
            +VA NP  +    K +    R    E ++ + +        RLA +  + +G R  D C
Sbjct: 158 GHVATNPVTATRTAKSEVRRSRLTANEYVEIYHAAEPLPIWLRLAMDLAVVTGQRVGDLC 217

Query: 211 RAGVQHLQNNIFSIKTQKTGTIITVEL 237
           R     + +N   I+  KTG  + + L
Sbjct: 218 RMKWSDINDNHLHIEQSKTGAKLAIPL 244


>gi|326789825|ref|YP_004307646.1| integrase family protein [Clostridium lentocellum DSM 5427]
 gi|326540589|gb|ADZ82448.1| integrase family protein [Clostridium lentocellum DSM 5427]
          Length = 376

 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 49/251 (19%), Positives = 96/251 (38%), Gaps = 41/251 (16%)

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP--WTKEDMQQFKSFWS 187
           PS+    L+ ++  F+ AV+ E +  NPC+ V+RP+++    R    T ++M++    + 
Sbjct: 119 PSTVSNNLSCLKKTFEMAVKWELIIKNPCMYVDRPQKRKYQNRGQLMTVDEMKKLLEIYE 178

Query: 188 EGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFS----------------- 223
             S       + AF   L  GLR S+     +  +  +NNI                   
Sbjct: 179 NLSTKPSHMHKCAFYIALGCGLRNSEIRALTLDDIDFENNIIRVNKQFGKYTEKGKVVEG 238

Query: 224 -IKTQKTGTIITVELPD-------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKA 275
            I T+   +I  +  PD        ++  L   P+ K+ F+     + +     S +F  
Sbjct: 239 YITTKSESSIRDIYAPDFVIAAIKNYISTLDCIPLSKQLFWSARTNKPVGRQCLSTFFTN 298

Query: 276 KATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIK 334
                 +     H +R   AT+ A  G     L    G   ++    Y +  + +     
Sbjct: 299 ILKNNNLPVIDFHDLRHLHATLLASKGVNMKSLSNRMGHSKLETTNIYMQPINEV----- 353

Query: 335 NSRRISSVVDS 345
             ++++ V+D+
Sbjct: 354 -DKQVAKVLDN 363


>gi|254167351|ref|ZP_04874203.1| site-specific recombinase, phage integrase family protein
           [Aciduliprofundum boonei T469]
 gi|197623614|gb|EDY36177.1| site-specific recombinase, phage integrase family protein
           [Aciduliprofundum boonei T469]
          Length = 279

 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 44/210 (20%), Positives = 83/210 (39%), Gaps = 14/210 (6%)

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           RK++ +S      ++R  FK      Y  ++   ++  PKR  +  +  +++++++    
Sbjct: 62  RKYSKNSLYLATKAIRSYFK------YKNLDTAKNLSSPKRPKQMPKYLSEDEVKRLIEA 115

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN--IFSIKTQKTG----TIITVELPD 239
            SE  +       L YSGLR S+ C   ++ +  N  I  +++ K       +++  + +
Sbjct: 116 SSENPRDYAIISLLAYSGLRVSELCNLKIEDVDFNERIVYVRSGKGDKDRIVVVSPRVIE 175

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATIS 297
                L       E  F +    K++  Q     K  A KAG+ K    H +R   AT  
Sbjct: 176 ALQNYLYTREDDMEYLFASQKSNKISRVQVFRIVKKYAEKAGIKKEVTPHVLRHTLATTL 235

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGAD 327
              G     +    G  +V   + YT   D
Sbjct: 236 LRRGVDIRFIQQFLGHSSVATTQIYTHVDD 265


>gi|326409495|gb|ADZ66560.1| phage integrase [Brucella melitensis M28]
          Length = 92

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 30/53 (56%)

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
           HG+RK    I A+ GA+  ++M T+G   +  AE YT+ A++ RL      R+
Sbjct: 33  HGLRKTLGKILAEGGASTRQIMDTFGHDDIAHAELYTREAEQARLATDGMSRV 85


>gi|293572845|ref|ZP_06683798.1| DNA integration/recombination/invertion protein [Enterococcus
           faecium E980]
 gi|291607092|gb|EFF36461.1| DNA integration/recombination/invertion protein [Enterococcus
           faecium E980]
          Length = 380

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 44/180 (24%), Positives = 82/180 (45%), Gaps = 20/180 (11%)

Query: 59  EYINS--PRKKPTTLK-----WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY 111
           EY N+   ++KP T K     W+ +EY+++    +L    RI    + + ++ + GD   
Sbjct: 55  EYENNLLKKEKPKTYKDVYDLWM-TEYKRTVRGSTLLKTERI----FKNHVLEELGDIYI 109

Query: 112 RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
            +IT   I+  ++   +   +A + +    ++FK+AVR   +  NP  ++ +PKR+ +  
Sbjct: 110 SEITPIKIQKLMDKWANKYDTAPKMMNYTGLVFKYAVRFGIIESNPTDAIRKPKRRKKTT 169

Query: 172 RPWTKEDMQQFKSFWSE-GSQPRLA----FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226
                 D +Q K F      QP +     F  L  +G+R  +   AG    ++  F  KT
Sbjct: 170 TEEPFYDKKQLKLFLDVLYEQPNIKVQAFFRLLAMTGMRKQE---AGALEWRDIDFKAKT 226


>gi|309775658|ref|ZP_07670657.1| integrase/recombinase XerD [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916564|gb|EFP62305.1| integrase/recombinase XerD [Erysipelotrichaceae bacterium 3_1_53]
          Length = 304

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 58/224 (25%), Positives = 94/224 (41%), Gaps = 23/224 (10%)

Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI--NPCLSVERPKRKTEGIRPWTKE 177
           +SGV S +   S+  + L+S+R  +++    EYV I  NP L  + PKR          +
Sbjct: 63  KSGV-SGEMKNSTIARKLSSLRSFYRYL--NEYVGIAQNPFLYFKTPKRSKRIPEFLFYD 119

Query: 178 DMQQFKSFWS----EGSQPRLAFEFLLYSGLRCSD--SCRAGVQHLQNNIFSI--KTQKT 229
           +M  F S ++    +G + R  FE +   GLR S+  S R     LQ  I +I  K  K 
Sbjct: 120 EMDTFLSSFALDTPDGLRDRAMFELMYACGLRVSEAASLRLRDIDLQERILTITGKGNKQ 179

Query: 230 GTI----ITVELPDGFMKL---LAMTPIGK-ETFFINNDKQKMN--ATQFSIWFKAKATK 279
             +    +  EL + +++    L M P  + +  FIN   + +     Q+ +   A   K
Sbjct: 180 RIVPFYALAGELVERYLQQVRPLWMQPSQEHDIVFINQRGKGLTTRGIQYRMQVAAAGCK 239

Query: 280 AGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
             V+   H  R   AT   D GA    +    G  ++   + Y 
Sbjct: 240 LQVHVHPHMFRHSFATHLLDNGADLRVVQELLGHSSLSTTQVYV 283


>gi|229060296|ref|ZP_04197663.1| DNA integration/recombination/invertion protein [Bacillus cereus
           AH603]
 gi|228719023|gb|EEL70639.1| DNA integration/recombination/invertion protein [Bacillus cereus
           AH603]
          Length = 369

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 27/118 (22%), Positives = 56/118 (47%), Gaps = 5/118 (4%)

Query: 95  FESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL---FKWAVRQ 150
           + ++ +Q +I   G     K+   HI+   +S      +    L   R+L      AV+Q
Sbjct: 88  YRAFINQHVIPSIGMITLHKLNVMHIQKCYKSSIDKGITNNSILLMHRILKSSLNLAVKQ 147

Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD 208
             ++ NP    E PK++   I+ WT+E++++F    S+ S+  + +   + +G+R  +
Sbjct: 148 NVLSRNPAAFAEIPKKEKTSIQTWTEEEVKKF-LLHSQESRYHIGYLLAITTGMRLGE 204


>gi|301022623|ref|ZP_07186494.1| phage integrase, SAM-like domain protein [Escherichia coli MS
           196-1]
 gi|299881195|gb|EFI89406.1| phage integrase, SAM-like domain protein [Escherichia coli MS
           196-1]
          Length = 327

 Score = 40.8 bits (94), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 33/147 (22%), Positives = 64/147 (43%), Gaps = 2/147 (1%)

Query: 93  ISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQ 150
           + + S    I RK  D     I+TK + + + +   +   +SA    +++  +F+ A+ +
Sbjct: 68  LDYASKIRAIRRKLPDKPLTDISTKEVAAMLNTYVAEGKAASAKLIRSTLVDVFREAIAE 127

Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210
            +VA NP  +    K +    R    E ++ + +        RLA +  + +G R  D C
Sbjct: 128 GHVATNPVTATRTAKSEVRRSRLTANEYVEIYHAAEPLPIWLRLAMDLAVVTGQRVGDLC 187

Query: 211 RAGVQHLQNNIFSIKTQKTGTIITVEL 237
           R     + +N   I+  KTG  + + L
Sbjct: 188 RMKWSDINDNHLHIEQSKTGAKLAIPL 214


>gi|251772344|gb|EES52912.1| phage integrase family protein [Leptospirillum ferrodiazotrophum]
          Length = 336

 Score = 40.8 bits (94), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 55/251 (21%), Positives = 98/251 (39%), Gaps = 33/251 (13%)

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR---------KTEGIRP 173
           +  R + PSS  + L+S+R  + +   Q ++A +P   +  P+          +TE    
Sbjct: 91  LHDRGYAPSSIARILSSLRGFYGFLKTQGHIAEDPFAGISGPRANRPLPPLLTETEAETL 150

Query: 174 WTKEDMQQFKSFWSEGS--QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-KTG 230
            T            EG+  + R   E    +G+R S+ C    +     I S++ + K G
Sbjct: 151 VTAPVRNPVPKGGDEGTSLRDRAILELFYQTGVRLSELCGLLWEDAAPGIVSLRVRGKGG 210

Query: 231 TIITVELPDGFMKLL----------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280
               V +    +K L           ++P G    F + D   ++  Q S   K  A +A
Sbjct: 211 KERRVPVVGEALKALCALREFLLKSGVSPTG--PLFADGDGGALSPWQVSRIVKKYAREA 268

Query: 281 GVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN-SR 337
           G+ K  S H +R   AT   D  A   E+ +  G  ++   + Y      +  G+   +R
Sbjct: 269 GLQKTVSPHALRHSCATHLLDREADLREIQSLLGHASLGSTQRY------LHTGLSEIAR 322

Query: 338 RISSVVDSDDP 348
           ++S + D   P
Sbjct: 323 KLSKIRDETPP 333


>gi|81428201|ref|YP_395201.1| site-specific recombinase, prophage lsa1 integrase [Lactobacillus
           sakei subsp. sakei 23K]
 gi|78609843|emb|CAI54890.1| Site-specific recombinase, prophage lsa1 integrase [Lactobacillus
           sakei subsp. sakei 23K]
          Length = 385

 Score = 40.8 bits (94), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 54/115 (46%), Gaps = 13/115 (11%)

Query: 100 DQIIRKSGDFDYRKITTKHIRSGVES-RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158
           + I+   G +  R ITT  +++ +    K T  S   +      +FK+A+ Q Y+  NPC
Sbjct: 98  NHILPAFGKYRIRTITTSQVQTTLNKWFKQTDYSFKPWFNYTSAIFKYAILQGYIKDNPC 157

Query: 159 LSVERPKR--KTEGIRPWTKEDMQQFKSFWSEGSQP------RLAFEFLLYSGLR 205
             V  PK+  K + +  W K+   Q K+F++ G  P         F  L ++G+R
Sbjct: 158 TRVTMPKKLDKEDTLNFWDKD---QLKTFFN-GIDPVNDLEKYTLFRVLAFTGIR 208


>gi|259047877|ref|ZP_05738278.1| phage integrase family site-specific recombinase [Granulicatella
           adiacens ATCC 49175]
 gi|259035554|gb|EEW36809.1| phage integrase family site-specific recombinase [Granulicatella
           adiacens ATCC 49175]
          Length = 393

 Score = 40.8 bits (94), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 48/242 (19%), Positives = 100/242 (41%), Gaps = 27/242 (11%)

Query: 97  SYFDQ-IIRKSGDFDYRKITTKHIRSGVES-RKHTPSSAIQFLTSMRVLFKWAVRQEYVA 154
           +YF + I+   GD+    IT +  ++ V     + P S   +    +++FK+A +   + 
Sbjct: 100 TYFKKHILPAFGDYYIDTITIQDCQAQVNRWYSNYPKSTQSYKIYAQMIFKYAQKLNLIE 159

Query: 155 INPCLSVERPKR---KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD--- 208
            NP   V+ PK    K + ++ + +E + +F  +     +    F  L Y+GLRC +   
Sbjct: 160 KNPMSLVDLPKSGDFKDDKLKYYDRETLIRFLEYIEPFKEVYTFFYLLSYTGLRCGEAFA 219

Query: 209 -------------SCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA--MTPIGKE 253
                        S    V     + +  +T+    + T+ +     +L++      G E
Sbjct: 220 LTWNDIDFRNHSISVNKTVARSMEDKYISQTKTKNGMRTIRINGSLERLISEWKELSGNE 279

Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMAT 310
           T+   N      ++  ++++  +  + G N    + HG R   A++ A+AGA   ++   
Sbjct: 280 TYVFQNRNNSFYSSNTAVYWLNQILE-GTNFPRITPHGFRHTHASLLAEAGADLKDIQDR 338

Query: 311 YG 312
            G
Sbjct: 339 LG 340


>gi|324009915|gb|EGB79134.1| phage integrase, SAM-like domain protein [Escherichia coli MS 57-2]
          Length = 357

 Score = 40.4 bits (93), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 47/220 (21%), Positives = 86/220 (39%), Gaps = 16/220 (7%)

Query: 93  ISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQ 150
           + + S    I RK  D     I+TK + + + +   +   +SA    +++  +F+ A+ +
Sbjct: 98  LDYASKIRAIRRKLPDKPLTDISTKEVAAMLNTYVAEGKAASAKLIRSTLVDVFREAIAE 157

Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210
            +VA NP  +    K +    R    E +  + +        RLA +  + +G R  D C
Sbjct: 158 GHVATNPVTATRTAKSEVRRSRLTANEYVAIYHAAEPLPIWLRLAMDLAVVTGQRVGDLC 217

Query: 211 RAGVQHLQNNIFSIKTQKTGTIITVELP---DGFMKLLAMT------PIGKETFFINNDK 261
           R     + +N   I+  KTG  + + L    D     LA T        G ET   +   
Sbjct: 218 RMKWSDINDNHLHIEQSKTGAKLAIPLTLTIDALNISLADTLQKCREASGSETIIASKHH 277

Query: 262 QKMNATQFSIWFKAKATKAGVNKSA-----HGVRKFSATI 296
             ++    S +F      +G++        H +R  SA +
Sbjct: 278 DPLSPKTVSKYFTKARNASGLSFDGDPPTFHELRSLSARL 317


>gi|167763873|ref|ZP_02436000.1| hypothetical protein BACSTE_02254 [Bacteroides stercoris ATCC
           43183]
 gi|167697989|gb|EDS14568.1| hypothetical protein BACSTE_02254 [Bacteroides stercoris ATCC
           43183]
          Length = 316

 Score = 40.4 bits (93), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 56/228 (24%), Positives = 89/228 (39%), Gaps = 36/228 (15%)

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-- 187
           P S  + L+ ++  F + V  +Y   +P   +E PK         T E++ +  S     
Sbjct: 78  PRSQARILSGIKSFFHFLVIADYQEADPSELLEGPKIGFRLPEVLTVEEIDRIISTVDME 137

Query: 188 --EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
             EG + R   E L   GLR S+ C   +  L      IK +  G         G  +L+
Sbjct: 138 KKEGQRNRAILETLYSCGLRVSELCNLKISDLYFEEGFIKVEGKG---------GKQRLV 188

Query: 246 AMTPIG-KET--FFINNDKQKM---------------NATQFSIW--FKAKATKAGVNK- 284
            ++P   KE   +F + +  K+               N ++  ++   K  A KAG+ K 
Sbjct: 189 PISPRAIKEIKYWFADRNLGKIKKGYEDYVFLARWGNNISRIMVFHMIKELAEKAGITKN 248

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            S H  R   AT   + GA    +    G +++   E YT   DR RL
Sbjct: 249 ISPHTFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYTH-IDRNRL 295


>gi|91776681|ref|YP_546437.1| tyrosine recombinase XerD [Methylobacillus flagellatus KT]
 gi|91710668|gb|ABE50596.1| Tyrosine recombinase XerD [Methylobacillus flagellatus KT]
          Length = 277

 Score = 40.4 bits (93), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 45/215 (20%), Positives = 89/215 (41%), Gaps = 19/215 (8%)

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KSF 185
           P S  + + S+R  +++A+R+ Y++ +P + +E PK      +  +++++++      + 
Sbjct: 49  PRSISRLVASLRRFYRFALRESYISADPSIHIESPKLPRSLPKSLSEDEVERLINAPDTN 108

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMK 243
            + G + R   E L  +GLR S+     V  L   + +  I  + + T + V L +  ++
Sbjct: 109 TNLGLRDRAMLETLYATGLRVSELVGMHVTELSLTDGVVRITGKGSKTRL-VPLGEQAVE 167

Query: 244 LLA----------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRK 291
            LA          +     +  F+    + M    F    K  A  AG+  S   H +R 
Sbjct: 168 WLARYLQEGRPSILQQRLSDHLFVTQRGEGMTRQAFWYLIKRYAAIAGIQASLSPHVLRH 227

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
             AT   + GA    +    G   +   + YT  A
Sbjct: 228 AFATHLLNHGADLRVVQMLLGHADISTTQIYTHVA 262


>gi|24460043|dbj|BAC22654.1| probable integrase [Comamonas sp. NCIMB 9872]
          Length = 404

 Score = 40.4 bits (93), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 46/195 (23%), Positives = 86/195 (44%), Gaps = 15/195 (7%)

Query: 53  GSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYR 112
           G  P  E   +  ++  T++ L+ +YR +A   +LA +++ S+     +I    G     
Sbjct: 86  GRDPAAEKRKAKSRRDWTVRQLVEDYR-TAVVPTLASSTQCSYGRNLKRIEAGLGAVKIT 144

Query: 113 KITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE-------RPK 165
           K+    +   +E        A   L   + +F+ A  +  + +NP L VE       RPK
Sbjct: 145 KVEASDVVGLIERSGLGWVEANTLLIVQKAIFRRAAGKRLINVNPVLGVELSAIIGPRPK 204

Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRL-AFEFLLYSGLRCSDSCRAGVQ--HLQNNIF 222
            +   +   T++++       ++ SQ  L A   LL +G+R S+  +A  +  HL    +
Sbjct: 205 IRQRLM--LTRDELAAV--MHAQMSQENLLALRILLATGVRASELFQARKEHVHLDEARW 260

Query: 223 SIKTQKTGTIITVEL 237
            I + KTGT + + L
Sbjct: 261 HIPSSKTGTGMDIPL 275


>gi|325678355|ref|ZP_08157975.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
 gi|324109856|gb|EGC04052.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
          Length = 403

 Score = 40.4 bits (93), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 58/258 (22%), Positives = 100/258 (38%), Gaps = 61/258 (23%)

Query: 110 DYRKITTKHIRSGVESRKHTPSSA------IQFLTSMRVLFKWAVRQEYVAINPCLSVER 163
           D +K      + G   R   P S       + F++S   +F++A+R + ++ NPC  V  
Sbjct: 122 DIQKFINSLAKPGANKRNGKPLSQKTMRHHLSFISS---IFEYAIRLDMISTNPCSKVII 178

Query: 164 PKRKTEG---IRP----WTKEDMQQFKSFWSEGS-QPRLAFEFLLYSGLRCSDSCRAG-- 213
           PK    G    +P    +TKE  ++F +   E   + R+ F   +Y+G      CR G  
Sbjct: 179 PKIDANGKVYKKPEKHIYTKEQAKEFMTILREAPIKYRVFFTLAIYTG------CRRGEI 232

Query: 214 ----------------VQH-----LQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252
                           + H      +N I++  T+   +   V+LP   +KLL      +
Sbjct: 233 LGIEWKNIDFENRTIMIDHTSNYTAKNGIYTDATKTDKSTRLVDLPPTVIKLLKAYKHDQ 292

Query: 253 ETFFIN-NDKQKMNATQFSIWFKAKATKAG----VNKSA----------HGVRKFSATIS 297
           +++  N  DK + +   F+ W  A    A     + K            H +R F A++ 
Sbjct: 293 DSYKANLGDKWQEHDRLFTKWDGAPMHPATPYSWLKKECERRSFPFYGVHTLRHFFASVE 352

Query: 298 ADAGATAHELMATYGWKT 315
            +AG     + A  G  T
Sbjct: 353 IEAGVDPTTVAAMLGHST 370


>gi|237745687|ref|ZP_04576167.1| phage integrase [Oxalobacter formigenes HOxBLS]
 gi|229377038|gb|EEO27129.1| phage integrase [Oxalobacter formigenes HOxBLS]
          Length = 348

 Score = 40.4 bits (93), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 54/128 (42%), Gaps = 4/128 (3%)

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFS--IKTQKTGTIITVELPDGFMKLLAMTPIGKETF 255
           F LY+GLR  +      +H+   +    +   K G  + V L D  M ++    IGK   
Sbjct: 183 FALYTGLRQRNVLDMEWEHVDLELRHAYVPRTKNGEALAVPLNDVAMSIIT-KQIGKHPQ 241

Query: 256 FINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWK 314
           F+ + + K      ++ ++    +AG+     H +R   AT    AG   HEL    GWK
Sbjct: 242 FVFSYRGKHIRYANTLAWRKALVRAGITDFRWHDLRHTWATWQRKAGTPTHELQHLGGWK 301

Query: 315 TVDQAETY 322
           T    E Y
Sbjct: 302 TRAMVERY 309


>gi|329956554|ref|ZP_08297151.1| tyrosine recombinase XerD [Bacteroides clarus YIT 12056]
 gi|328524451|gb|EGF51521.1| tyrosine recombinase XerD [Bacteroides clarus YIT 12056]
          Length = 316

 Score = 40.4 bits (93), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 49/212 (23%), Positives = 84/212 (39%), Gaps = 19/212 (8%)

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-- 187
           P S  + L+ ++  F + V  +Y+  +P   +E PK   +     T E++ +  S     
Sbjct: 78  PRSQARILSGIKSFFHFLVIADYLEADPSELLEGPKIGFKIPEVLTIEEIDRIISTVDME 137

Query: 188 --EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---IITVELPDGFM 242
             EG + R   E L   GLR S+ C   +  L      IK +  G+   ++ +  P    
Sbjct: 138 KKEGQRNRAILETLYSCGLRVSELCNLKISDLYFEEGFIKVEGKGSKQRLVPIS-PRAIK 196

Query: 243 KL---LAMTPIGK------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRK 291
           ++    A   +GK      +  F+     +++        K  A KAG+ K  S H  R 
Sbjct: 197 EIKYWFADRNLGKIKKGYEDYVFLARWGNRISRIMVFHMIKELAEKAGITKNISPHTFRH 256

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYT 323
             AT   + GA    +    G +++   E YT
Sbjct: 257 SFATHLLEGGANLRAIQCMLGHESIATTEIYT 288


>gi|320104524|ref|YP_004180115.1| integrase family protein [Isosphaera pallida ATCC 43644]
 gi|319751806|gb|ADV63566.1| integrase family protein [Isosphaera pallida ATCC 43644]
          Length = 442

 Score = 40.4 bits (93), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 54/281 (19%), Positives = 103/281 (36%), Gaps = 45/281 (16%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR---SGVESRKHTPS 131
           +SE+   A+   L + SR   ES            D R    + +R   S +  + + P 
Sbjct: 159 VSEHTLRAYQEDLGLFSRYLAESQPGCASSDREPIDPRLADARRLRGYSSWLSRQGYAPG 218

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KSFWS 187
           +  + L S+R  ++   +  ++  +P  ++  PK      RP   + +++      +  S
Sbjct: 219 TIARRLASLRTFYRHLRKHGHLEGDPTAAMRNPKPARRLPRPLRLDQIERLLEAVPTDQS 278

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKLL 245
            G + R   E L   GLR  +     ++ L  + N+  ++              G  +  
Sbjct: 279 LGVRDRAILELLYGGGLRVGELVALDLEDLDLERNVVRVR--------------GKGRRE 324

Query: 246 AMTPIGKET--------------------FFINNDKQKMNATQFSIWFKAKATKAGVNKS 285
            +TPIGK+                      F+N   +++ A      F+  A   G++  
Sbjct: 325 RLTPIGKQAAEWVRRWLTHRRPDHGGEHALFLNRYGRRLTARSVDRLFETHARGLGLDAD 384

Query: 286 A--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           A  H +R   AT   D GA    +    G + +   + YT+
Sbjct: 385 ATPHSLRHSFATHLLDRGADLRSVQELLGHRRLTTTQIYTQ 425


>gi|326566125|gb|EGE16282.1| tyrosine recombinase XerD [Moraxella catarrhalis BC1]
          Length = 307

 Score = 40.4 bits (93), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 59/273 (21%), Positives = 101/273 (36%), Gaps = 23/273 (8%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS---GVESRKHTPS 131
           +SE+R +     L++ +R ++       IR S D          +R+    ++  K +  
Sbjct: 22  LSEFRAAMLARGLSIATRNAYSQDVRLCIRLS-DMPVNLWQPSDVRNHLMCLKDAKKSER 80

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS---- 187
           S  + L S+   F W +   Y   NPC S++ PK      +  +++++            
Sbjct: 81  SIARALASLCQFFLWQIESGYREDNPCESIKTPKLGKTLPKTLSEQEVSSLLDAPDISSV 140

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
            G + +   E L   GLR S+     ++HL      +     G  + + +P G   L A+
Sbjct: 141 RGLRDKAMLEVLYACGLRVSELTSLSLEHLNLTAGWLSVTGKGNKMRL-IPLGEYALSAL 199

Query: 248 TP---------IGK---ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFS 293
                      IGK   +  F+      M    F    K  A  AG+N   S H +R   
Sbjct: 200 NEYLAVRGSLLIGKKDCQAVFLTEQGGYMTRHNFWHLIKKYALMAGINTAISPHTLRHAF 259

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           AT   + GA    +    G   +   + YT  A
Sbjct: 260 ATHLVNHGADLRSVQLLLGHSDLSTTQIYTHVA 292


>gi|325263946|ref|ZP_08130679.1| site-specific recombinase, phage integrase family [Clostridium sp.
           D5]
 gi|324030984|gb|EGB92266.1| site-specific recombinase, phage integrase family [Clostridium sp.
           D5]
          Length = 355

 Score = 40.4 bits (93), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 37/194 (19%), Positives = 80/194 (41%), Gaps = 24/194 (12%)

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS-----Q 191
           ++++R  + +  + + +  NP L V+ PK   + I     +++     +   G      Q
Sbjct: 119 MSALRSFYAYFFKHQVIEKNPTLLVDMPKLHDKAIIRLDTDEVASLLEYVEHGGDDLTGQ 178

Query: 192 PRLAFE-----------FLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELP 238
            ++ FE            LL +G+R S+     +Q +  +NN   + T+K G  + V   
Sbjct: 179 RKVYFEKTKNRDLAILTLLLGTGIRVSECVGLDIQDVDFKNNGVKV-TRKGGNEMVVYFG 237

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISA 298
           +     L M       +        +   + +++   +  + GV    + V+K++  I+ 
Sbjct: 238 EEVENALKMY-----LYTTRKSTAPLPGHENALFLSTQRKRIGVQAVENMVKKYARQITP 292

Query: 299 DAGATAHELMATYG 312
           +   T H+L +TYG
Sbjct: 293 NKKITPHKLRSTYG 306


>gi|163755025|ref|ZP_02162146.1| hypothetical protein KAOT1_03387 [Kordia algicida OT-1]
 gi|161325092|gb|EDP96420.1| hypothetical protein KAOT1_03387 [Kordia algicida OT-1]
          Length = 437

 Score = 40.4 bits (93), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 42/194 (21%), Positives = 86/194 (44%), Gaps = 24/194 (12%)

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIR--KSGDFD---YRKITTKHIRSGVESRK------ 127
           +K A+W + A   +I+   +F + ++  K  D D    + +  + I   + S K      
Sbjct: 137 QKEAYWSARA---KITINGHFKRFVKWLKENDLDTIDIKALKRREIAVFLNSLKKYNKQR 193

Query: 128 ---HTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
                P SA     + TS+ +LF   V  + +  NP  ++++ K + +  + +T + ++Q
Sbjct: 194 ELTDEPVSAKTRNSYRTSLSLLFNQLVSDDILEYNPVKAIQKLKERPKTHKAYTDQQVKQ 253

Query: 182 FKSFWSEGSQPRLAF-EFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELP 238
            + +  +       F +F+ Y+ LR  + CR  V+   L+N    ++T KT     V + 
Sbjct: 254 MRDYMDKNDPYLRKFTQFIAYAFLRNVEVCRLRVKDIDLKNRRLYVQT-KTEAQEVVPII 312

Query: 239 DGFMKLLAMTPIGK 252
           D   K++    + K
Sbjct: 313 DNLAKVIKQMELHK 326


>gi|326204549|ref|ZP_08194406.1| integrase family protein [Clostridium papyrosolvens DSM 2782]
 gi|325985342|gb|EGD46181.1| integrase family protein [Clostridium papyrosolvens DSM 2782]
          Length = 297

 Score = 40.4 bits (93), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 41/205 (20%), Positives = 83/205 (40%), Gaps = 21/205 (10%)

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKR--------KTEGIRPWTKEDMQQFKSFWSE 188
           + S+R  F + + QEY+  NP   +  PK+        K + I+      M+  +     
Sbjct: 78  INSLRSFFSFLISQEYIDKNPMAPITAPKKPDRLPIYLKPDEIKLLISMPMKHSR---DN 134

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSI-----KTQKTGTIITVELPDGF 241
             + +   E L+++GLR S+      Q++   +N  ++     K Q+   I    + D +
Sbjct: 135 KLRDKCIIETLVFTGLRRSELLSLNWQNIDFGSNTITVLNGKGKKQRVVPITEPLISDLW 194

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATISA 298
             L    P+     FI+ +  +++ T  +  F+     AG+     + H +R    T+  
Sbjct: 195 AYLQTRLPLHDNAVFISGNGTRLSTTPLNQLFRRYLKLAGLTGKGYTIHKLRHSYGTLLL 254

Query: 299 DAGATAHELMATYGWKTVDQAETYT 323
             GA    + +  G   ++  + YT
Sbjct: 255 QNGADLISIQSLMGHNDLNTTKIYT 279


>gi|256424447|ref|YP_003125100.1| tyrosine recombinase XerD [Chitinophaga pinensis DSM 2588]
 gi|256039355|gb|ACU62899.1| tyrosine recombinase XerD [Chitinophaga pinensis DSM 2588]
          Length = 316

 Score = 40.4 bits (93), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 43/213 (20%), Positives = 85/213 (39%), Gaps = 18/213 (8%)

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KS 184
           T +S  + ++ ++  +++   ++ V  +P + +E PK K +     + E+++Q     K+
Sbjct: 86  TATSQARIISGIKAFYRYLALEDVVRQDPTILLEAPKTKRQLPDVLSFEEIEQIIGQIKA 145

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII-TVELPDGFMK 243
              EG + R   E +   GLR S+     +  L  +   I+    G     V +    +K
Sbjct: 146 GTPEGQRNRAILETMYSCGLRVSEVTNLQISQLHFDAGFIRVVGKGDKERLVPIGSDAVK 205

Query: 244 LLAM--------TPIGK---ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290
            + +         P+ K   +  F+N     +      +  K     AG++K  S H  R
Sbjct: 206 YINIYKDEVRVHVPVKKGQEDILFLNRRGSALTRVMIFLVIKELTAAAGIDKQVSPHTFR 265

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYT 323
              AT   + GA    +    G +++   E YT
Sbjct: 266 HSFATHLVEGGADLRAVQEMLGHESITTTEIYT 298


>gi|256618627|ref|ZP_05475473.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200]
 gi|256598154|gb|EEU17330.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200]
 gi|315171724|gb|EFU15741.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX1342]
          Length = 371

 Score = 40.4 bits (93), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 67/160 (41%), Gaps = 24/160 (15%)

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFE--------SY-------FDQIIR---KSGD- 108
             TL+  +   R S  +G + +   + FE        SY       FD  IR   K  D 
Sbjct: 44  ENTLRATLLNQRISKQYGFIVLFELLLFEDRRRERKESYLATQQYMFDAHIREYFKQADI 103

Query: 109 --FDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
              DY+ I T   R  +  +  + +   + +  ++ L   AVRQ+++  NPC  +++   
Sbjct: 104 STLDYQVIVT--YRDTLLKKGISNNYINKIMVLLKKLLDIAVRQKFLIENPCRLLKKLSV 161

Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQP-RLAFEFLLYSGLR 205
           K + I  WT  D   F   + E  +  RL F    ++G+R
Sbjct: 162 KQKKISYWTLNDFLLFDQLFKEEEKVFRLFFHLAFFTGMR 201


>gi|28198560|ref|NP_778874.1| site-specific tyrosine recombinase XerD [Xylella fastidiosa
           Temecula1]
 gi|182681239|ref|YP_001829399.1| site-specific tyrosine recombinase XerD [Xylella fastidiosa M23]
 gi|73920482|sp|Q87DN0|XERD_XYLFT RecName: Full=Tyrosine recombinase xerD
 gi|28056644|gb|AAO28523.1| integrase/recombinase [Xylella fastidiosa Temecula1]
 gi|182631349|gb|ACB92125.1| tyrosine recombinase XerD [Xylella fastidiosa M23]
 gi|307579687|gb|ADN63656.1| site-specific tyrosine recombinase XerD [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 324

 Score = 40.4 bits (93), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 53/223 (23%), Positives = 86/223 (38%), Gaps = 25/223 (11%)

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           + ++P S  +  + +R  F +AV   +   NP   +  P       +  T+  ++   + 
Sbjct: 84  QHYSPLSNARLRSVLRTFFSYAVECGWRNDNPSTLLAHPVLPHPLPKALTESQIEALLAA 143

Query: 186 WS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDG 240
            S    EG + R   E +  +GLR S+     V  L      ++ T K G    V L + 
Sbjct: 144 PSIETPEGLRNRAMLELMYAAGLRVSELVTLPVAMLNQRQGVLRITGKGGKERLVPLGEE 203

Query: 241 FMK------------LLAMTPI-----GKETFFINNDKQKMNATQFSIWFKAKATKAGV- 282
                          L A  PI     G    FIN + ++++  QF  W K  A   G+ 
Sbjct: 204 SQHWLQRYLEQARPSLAADKPIPADSDGDVPLFINTNLKRLSRQQFWRWIKHYAALVGIA 263

Query: 283 -NK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
            NK S H +R   AT   + GA    L    G +++   + YT
Sbjct: 264 PNKVSPHVLRHSFATHLLNHGADLRALQMLLGHRSISTTQIYT 306


>gi|302878649|ref|YP_003847213.1| integrase family protein [Gallionella capsiferriformans ES-2]
 gi|302581438|gb|ADL55449.1| integrase family protein [Gallionella capsiferriformans ES-2]
          Length = 298

 Score = 40.4 bits (93), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 59/255 (23%), Positives = 109/255 (42%), Gaps = 35/255 (13%)

Query: 110 DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV-ER---PK 165
           D RK   +H+R   E RK    +  + +  +++LF+W  ++  ++INP  ++ ER   PK
Sbjct: 52  DLRKFI-RHLR---EERKLKEITIKRRIACLKLLFRWVQQENMISINPFDNLNERIRLPK 107

Query: 166 R-----KTEGIRPWT-----KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ 215
           R      +E I+  T     +   ++F+ F +      +A + LL +G+R  +  +  ++
Sbjct: 108 RLPRALGSEEIKLLTGAINLEATDKEFQEFVTG-----IATKLLLTTGIRVGELVKIDIE 162

Query: 216 HLQNNIFSIKTQKTGT------IITVELPDGFMKLLAMTPI-GKET--FFINNDKQKMNA 266
            L     S+K Q  G       +   +L     + L +      ET   FI         
Sbjct: 163 DLVLPDCSLKIQGKGNRQRLVYLFEPKLNQAIARYLTIRLTRATETKKLFITEAGIPFTT 222

Query: 267 TQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            +  I     A+KAG+ +  + H +R  +AT   +AG     +    G +++   E YT 
Sbjct: 223 QKTRILLGDLASKAGIERRITPHMLRHTTATQLLEAGLDIRYVQKLLGHQSISTTEIYTH 282

Query: 325 GADR-IRLGIKNSRR 338
             D  +R  +K + R
Sbjct: 283 VTDHGLRTALKRTYR 297


>gi|218704094|ref|YP_002411613.1| Integrase from phage [Escherichia coli UMN026]
 gi|218431191|emb|CAR12067.1| Integrase from phage [Escherichia coli UMN026]
 gi|323976899|gb|EGB71987.1| bacteriophage lambda integrase domain-containing protein
           [Escherichia coli TW10509]
          Length = 356

 Score = 40.4 bits (93), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 48/215 (22%), Positives = 83/215 (38%), Gaps = 11/215 (5%)

Query: 25  FRKGHGRRIRLPYPHESTFIPAYMSALTGST--PKREYINSPRKKPTTLKWLISEYRKSA 82
           F  G  RRI +     +  I A +   +G    P    INS      TL   +  Y K  
Sbjct: 35  FGLGRDRRIAI-----TEAIQANIELFSGHKHKPLTARINS--DNSVTLHSWLDRYEKIL 87

Query: 83  HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSM 140
               +   + I++ S    I R   D     ITTK I + +     +   +SA    +++
Sbjct: 88  ASRGIKQKTLINYMSKIKAIRRGLPDVPLEDITTKEIAAMLNGYIDEGKAASAKLIRSTL 147

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200
              F+ A+ + ++  NP  +    K +    R    E ++ +++  S     RLA E  +
Sbjct: 148 SDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEYLKIYQAAESSPCWLRLAMELAV 207

Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
            +G R  D C      + +    ++  KTG  I +
Sbjct: 208 VTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAI 242


>gi|212696810|ref|ZP_03304938.1| hypothetical protein ANHYDRO_01373 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676100|gb|EEB35707.1| hypothetical protein ANHYDRO_01373 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 370

 Score = 40.4 bits (93), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 29/112 (25%), Positives = 51/112 (45%), Gaps = 6/112 (5%)

Query: 100 DQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL 159
           + I+   G+    KITT  I+  +  +    +        +  LFK+A+ Q Y   NPCL
Sbjct: 93  NHILPYLGNKKLDKITTPVIQKLINKKSQEIADFKLINIYLNRLFKFAINQGYTDYNPCL 152

Query: 160 SVERP----KRKTEGIRPWTKEDMQQFKSFWSEGSQPR--LAFEFLLYSGLR 205
           ++  P    ++K   +  W KE++++F     +       L F+   Y+GLR
Sbjct: 153 NIIYPTIRKEQKDMSLEYWDKEELKEFLYHAKKDLDQMWYLFFKIATYAGLR 204


>gi|268592909|ref|ZP_06127130.1| tyrosine recombinase XerC [Providencia rettgeri DSM 1131]
 gi|291311699|gb|EFE52152.1| tyrosine recombinase XerC [Providencia rettgeri DSM 1131]
          Length = 309

 Score = 40.4 bits (93), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 31/123 (25%), Positives = 54/123 (43%), Gaps = 8/123 (6%)

Query: 112 RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
           R I  K  +SG+++     +S    L+S+R  F W V+Q  +  NP  ++  PK K    
Sbjct: 66  RNIAAKSRKSGLQA-----ASMALRLSSLRSFFDWMVQQGELPANPAKAIHAPKSKKRLP 120

Query: 172 RPWTKEDMQQFKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
           +    +++ Q  +  S      + R   E +  +GLR S+     V+HL  N   +    
Sbjct: 121 KNMDVDEVSQLLNMDSGDPLVVRDRTMLEVMYGAGLRLSELVGLDVRHLDLNTGEVWVMG 180

Query: 229 TGT 231
            G+
Sbjct: 181 KGS 183


>gi|189024593|ref|YP_001935361.1| Phage integrase [Brucella abortus S19]
 gi|189020165|gb|ACD72887.1| Phage integrase [Brucella abortus S19]
          Length = 116

 Score = 40.4 bits (93), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 29/53 (54%)

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
           HG+RK    I A+ GA+  ++M T G   +  AE YT+ A++ RL      R+
Sbjct: 57  HGLRKTLGKILAEGGASTRQIMDTLGHDDIAHAELYTREAEQARLATDGMSRV 109


>gi|194432422|ref|ZP_03064709.1| integrase [Shigella dysenteriae 1012]
 gi|194419309|gb|EDX35391.1| integrase [Shigella dysenteriae 1012]
 gi|332095959|gb|EGJ00966.1| integrase [Shigella dysenteriae 155-74]
          Length = 357

 Score = 40.4 bits (93), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 33/147 (22%), Positives = 64/147 (43%), Gaps = 2/147 (1%)

Query: 93  ISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQ 150
           + + S    I RK  D     I+TK + + + +   +   +SA    +++  +F+ A+ +
Sbjct: 98  LDYASKIRAIRRKLPDKPLTDISTKEVAAMLNTYVAEGKAASAKLIRSTLVDVFREAIAE 157

Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210
            +VA NP  +    K +    R    E ++ + +        RLA +  + +G R  D C
Sbjct: 158 GHVATNPVTATRTAKSEVRRSRLTANEYVEIYHAAEPLPIWLRLAMDLAVITGQRVGDLC 217

Query: 211 RAGVQHLQNNIFSIKTQKTGTIITVEL 237
           R     + +N   I+  KTG  + + L
Sbjct: 218 RMKWSDINDNHLHIEQGKTGAKLAIPL 244


>gi|182416388|ref|YP_001821454.1| tyrosine recombinase XerD [Opitutus terrae PB90-1]
 gi|177843602|gb|ACB77854.1| tyrosine recombinase XerD [Opitutus terrae PB90-1]
          Length = 317

 Score = 40.4 bits (93), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 58/280 (20%), Positives = 104/280 (37%), Gaps = 63/280 (22%)

Query: 87  LAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRS---GVESRKHTPSSAIQFLTSM 140
           LA N+  S+    DQ    +   G  D+R +T +        + S  +T +S  + L+++
Sbjct: 35  LAANTVASYRRDLDQAATHLAAQGARDWRAVTGEQAAGWIHSLSSASYTVASLARKLSAL 94

Query: 141 RVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRL 194
           R L  + VR+ + A      LS  +  R+  G    T+E++ +  +  + G     + R 
Sbjct: 95  RSLAHFLVRERFRADDFTALLSGPKASRRIPGT--LTEEEIARLLAAPTGGDARALRDRA 152

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA------MT 248
             E    SGLR S+     +Q                   V+L  GF+++        + 
Sbjct: 153 LLELFYSSGLRVSELAGLLLQQ------------------VDLEHGFLRVFGKGAKERVV 194

Query: 249 PIGKET-----------------------FFINNDKQKMNATQFSIWFKAKATKAGVNKS 285
           PIG +                         F+N +   ++     +  K  A +AG+ K+
Sbjct: 195 PIGGKAIEALATYLTAGRPHFVRSRTGSQLFLNKNGGPLSRVMLWMLVKKYAKRAGLTKN 254

Query: 286 A--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
              HG+R   AT     GA    +    G  ++   + YT
Sbjct: 255 VKPHGLRHSFATHLLSGGADLRAIQEMLGHASISTTQIYT 294


>gi|225174860|ref|ZP_03728857.1| tyrosine recombinase XerD [Dethiobacter alkaliphilus AHT 1]
 gi|225169500|gb|EEG78297.1| tyrosine recombinase XerD [Dethiobacter alkaliphilus AHT 1]
          Length = 295

 Score = 40.4 bits (93), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 43/207 (20%), Positives = 85/207 (41%), Gaps = 21/207 (10%)

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKSFWSEGSQP 192
           + S+R  + +  ++ ++  NP   +E PK + +  R  T ++M    +Q       G + 
Sbjct: 74  MASIRSFYNYLFQERHLVENPAAELESPKLEKKLPRVLTPQEMDLLLEQPDQTQVTGIRD 133

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---IITVE----------LPD 239
           +   E +  +G+R S+     +  +  +   I+    G+   II +           L +
Sbjct: 134 KAMLEVIYATGIRVSELMSLDIGDVNLDAGFIRCLGKGSKERIIPLGSVAIRNVGRYLNE 193

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS 297
           G  KL+     G+ + F+N    ++    F    K  AT+AG+ K  + H +R   AT  
Sbjct: 194 GRPKLVRQA--GEASLFVNQHGNRLTRQGFWKILKKYATRAGITKEITPHTMRHSFATHL 251

Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324
            + GA    +    G   +   + YT+
Sbjct: 252 LENGADLRSVQEMLGHADISTTQIYTQ 278


>gi|254282053|ref|ZP_04957021.1| tyrosine recombinase XerC [gamma proteobacterium NOR51-B]
 gi|219678256|gb|EED34605.1| tyrosine recombinase XerC [gamma proteobacterium NOR51-B]
          Length = 304

 Score = 40.4 bits (93), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 56/249 (22%), Positives = 100/249 (40%), Gaps = 25/249 (10%)

Query: 97  SYFDQIIRKSGDFDYRKITTKHIRS---GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYV 153
           ++F++  R S     R I    +RS    ++ +   P++  + L+S+R  FK    +   
Sbjct: 35  NHFEEFCRASNCTSPRDIKESVVRSWAGQMQRQGKAPATIQRGLSSVRSYFKHLAARHAD 94

Query: 154 AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL-----AFEFLLY-SGLRCS 207
             NP + +  P+R  +   P T E   +  + +   ++  L     A   LLY SGLR +
Sbjct: 95  ISNPAIGIRAPRRPRK--LPKTIE-ADRIGALFQRPAESTLEKRDQAIAELLYSSGLRLA 151

Query: 208 DSCRAGVQHL--QNNIFSI--KTQKTGTI-ITVELPDGFMKLLAMTPIGKET------FF 256
           +     ++ L  +  + ++  K  KT T+ + V         +A  PIG+E        F
Sbjct: 152 ELVDVNLEDLDRREGVITVTGKGDKTRTVPVGVAALKALEAWIACRPIGQEVLSAKAPLF 211

Query: 257 INNDKQKMNATQFSIWFK--AKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWK 314
           +N    ++         K  AKAT  G N   H +R   AT   ++      +    G  
Sbjct: 212 VNQRGTRLGQRSVQDRLKKLAKATHLGQNLHPHMLRHSFATHLLESSGDLRAVQELLGHA 271

Query: 315 TVDQAETYT 323
            +   + YT
Sbjct: 272 NISTTQIYT 280


>gi|329117566|ref|ZP_08246283.1| site-specific recombinase, phage integrase family [Streptococcus
           parauberis NCFD 2020]
 gi|326907971|gb|EGE54885.1| site-specific recombinase, phage integrase family [Streptococcus
           parauberis NCFD 2020]
          Length = 377

 Score = 40.4 bits (93), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 32/143 (22%), Positives = 63/143 (44%), Gaps = 19/143 (13%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--------- 128
           +RK ++  +   N     ++YF Q+       D +K+T +HI    ES K          
Sbjct: 78  HRKISYLTTQRNNYDRHIKTYFQQV-------DMKKLTYEHIYRFRESLKEKSTKQNSEE 130

Query: 129 --TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             + ++  + +  ++ +F   +R E +  NPC ++ +   K   +  W  E+  +FKS  
Sbjct: 131 KLSNNTINKIMILVKKMFDSGIRNELITKNPCQNLRKLPIKKPELNFWGIEEYLKFKSLI 190

Query: 187 SEGS-QPRLAFEFLLYSGLRCSD 208
           +E   Q  L F    ++G+R  +
Sbjct: 191 TEDEYQYNLFFTLAYFTGMRMGE 213


>gi|320161781|ref|YP_004175006.1| putative site-specific recombinase [Anaerolinea thermophila UNI-1]
 gi|319995635|dbj|BAJ64406.1| putative site-specific recombinase [Anaerolinea thermophila UNI-1]
          Length = 288

 Score = 40.4 bits (93), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 31/132 (23%), Positives = 56/132 (42%), Gaps = 12/132 (9%)

Query: 98  YFDQIIRKSGDFDYRKITTKHIRSG---VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA 154
           Y   ++   GD +   ITT  + +    + +    P +   F+   + LF+WAV + Y+A
Sbjct: 35  YLRPLVAHLGDRETNSITTSDLINLFHLMRTDDREPYTLFNFIRGWKRLFRWAVDEGYIA 94

Query: 155 INPCLSVER---PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY---SGLRCSD 208
           +NP   + R   P++   GI+    ED+ +     S+   P      +L+   +G+R   
Sbjct: 95  MNPAKKLRRPPLPQKSPAGIQA---EDLSKMLDAASKTGTPERDLALVLFVADTGVRLGG 151

Query: 209 SCRAGVQHLQNN 220
                V  L  N
Sbjct: 152 VAGLTVDRLDIN 163


>gi|257870759|ref|ZP_05650412.1| phage integrase [Enterococcus gallinarum EG2]
 gi|257804923|gb|EEV33745.1| phage integrase [Enterococcus gallinarum EG2]
          Length = 383

 Score = 40.4 bits (93), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 71/305 (23%), Positives = 123/305 (40%), Gaps = 60/305 (19%)

Query: 63  SPRKKPTTLKWL----ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH 118
           S +K+  T + L    + ++RKS    ++A N R   E +   ++ K G     +IT   
Sbjct: 60  SKKKRTITFQELYDDWLEQHRKSVKSSTVATNRRF-IEGH---VLPKFGKLKLDQITVSF 115

Query: 119 IRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP--W 174
            +  V     K+     I+  T+   +  + V  E +  NP      P++K E  +P  +
Sbjct: 116 CQKCVNEWHDKYKQYHYIRRATAQ--VMNYGVSMELMESNPMKKTILPRKKEEEKKPNFY 173

Query: 175 TKEDMQQFKSFWS--EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
           +K+++ +F +F    +  +    F  L  +G+R S++    ++ L  NIF+ KT   G  
Sbjct: 174 SKDELHEFMTFVKTLDNYKYYAFFRLLAITGMRKSEALGLYIKDL--NIFN-KTLTIGKT 230

Query: 233 I--------------------TVELPDGFMKLLAM-TPIGKETFF-INNDKQKMNATQFS 270
           I                    T+ L D  +++L     I KE +F +  +  K     FS
Sbjct: 231 IAIDEYDQVVLQTPKTKNSYRTISLDDETIRILQKWFSIQKEDYFKLGFNTSKAKQLMFS 290

Query: 271 ----------------IWFKAKATKAGVNK---SAHGVRKFSATISADAGATAHELMATY 311
                            W   KA K G+     S HG R  + ++  +AGAT +E+    
Sbjct: 291 NMSNDLYYPQVINDWLDWIYDKAEKEGLTLKRISPHGFRHTACSLMFEAGATINEVQKRL 350

Query: 312 GWKTV 316
           G K V
Sbjct: 351 GHKDV 355


>gi|271966967|ref|YP_003341163.1| Site-specific recombinase XerD-like protein [Streptosporangium
           roseum DSM 43021]
 gi|270510142|gb|ACZ88420.1| Site-specific recombinase XerD-like protein [Streptosporangium
           roseum DSM 43021]
          Length = 373

 Score = 40.4 bits (93), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 5/67 (7%)

Query: 111 YRK-ITTKHIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
           YR  I T   R+G+ +R  TP   S+  + L+S+  L+ +A+R+  VA+NP   VERP+ 
Sbjct: 122 YRDTIATGTARAGL-ARPGTPLAASTVARRLSSLSSLYGYALRRRIVAVNPADPVERPEV 180

Query: 167 KTEGIRP 173
            T G  P
Sbjct: 181 STVGTTP 187


>gi|119715851|ref|YP_922816.1| phage integrase family protein [Nocardioides sp. JS614]
 gi|119536512|gb|ABL81129.1| phage integrase family protein [Nocardioides sp. JS614]
          Length = 368

 Score = 40.4 bits (93), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 49/109 (44%), Gaps = 6/109 (5%)

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           +P+S  ++ T +  +F+ A+R   V  NPC+  E PK   +  R  T E+     +   E
Sbjct: 125 SPASVRKYHTMLHSVFERALRDRVVTFNPCVHTELPKVVKKKARTLTPEEYVAILTALPE 184

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237
             Q RL  E  + +GLR  +      +HL      IK Q T     VE+
Sbjct: 185 --QHRLMVETAINTGLRWGELIALKPRHLD----LIKRQLTVEETVVEV 227


>gi|307591252|ref|YP_003900461.1| integrase family protein [Cyanothece sp. PCC 7822]
 gi|306986817|gb|ADN18692.1| integrase family protein [Cyanothece sp. PCC 7822]
          Length = 275

 Score = 40.4 bits (93), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 44/200 (22%), Positives = 86/200 (43%), Gaps = 9/200 (4%)

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK-RKTEGIRPWTKEDMQQFKSFW 186
           +TP +    +  ++ LF + V+  Y++ N    ++ PK R     +   + D+++     
Sbjct: 65  YTPPTVANKILCIKSLFSFCVKVGYLSFNIGALIKPPKTRDKRAEKILDQGDVKRLIEQA 124

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI--KTQKTGTIITVELPDGFMKL 244
           + G + R+    +  +GLR S++       L+ N  ++  K  K   II   +PD  ++ 
Sbjct: 125 TPG-RDRVLLCLIYTTGLRVSEAVNLTWSDLKGNKLAVYGKGSKLRFII---VPDWLLEQ 180

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGA 302
           L   P   E  F  +  + ++        K  A KAG++   SAH +R   A+ + + G 
Sbjct: 181 LQTLPKISEFIFATSTGKPIDRIFTHRMIKKCAEKAGIDPKTSAHWLRHSHASHAINNGC 240

Query: 303 TAHELMATYGWKTVDQAETY 322
               L  + G   ++  E Y
Sbjct: 241 NVRLLQESLGHSKLETTEKY 260


>gi|224368897|ref|YP_002603059.1| hypothetical protein HRM2_17930 [Desulfobacterium autotrophicum
           HRM2]
 gi|223691614|gb|ACN14897.1| hypothetical protein HRM2_17930 [Desulfobacterium autotrophicum
           HRM2]
          Length = 365

 Score = 40.4 bits (93), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 56/260 (21%), Positives = 102/260 (39%), Gaps = 24/260 (9%)

Query: 84  WGSLA----VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---------KHTP 130
           W SL     ++ RI +E +    ++        KIT  H++  +             + P
Sbjct: 90  WASLNKRSWIDDRIRWELHISAHLK---GMKMDKITPSHVQDILNHMATKDTPKGGHYAP 146

Query: 131 SSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
           ++  Q L  ++ +F W+++Q  Y   NPC SVE P        P  K  ++   S     
Sbjct: 147 ATIKQVLVLIKRVFNWSMQQGLYQGGNPCKSVEAPMFDNRINNPLDKSGLRSLMSVLDTW 206

Query: 190 SQPR--LAFEFLLYSGLRCSD--SCRAGVQHLQNNIFSIKTQKTGTIITVELP--DGFMK 243
           +  R  L  +F LYSG R  +  S        +N++ +++   T +     LP  +  M 
Sbjct: 207 NNERAILVIKFALYSGKRKGEVLSLTWDSVDFENHLLTLQAMNTKSKKAQSLPLNNHCMT 266

Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAG-A 302
           +L      K + ++           F   +K    +AG++   H +R   A+  A +G  
Sbjct: 267 ILERCRKLKVSDYVFPSTLGNYYNTFDETWKRIRKRAGISIRFHDLRHTYASYLASSGKV 326

Query: 303 TAHELMATYGWKTVDQAETY 322
             + L    G  T++  + Y
Sbjct: 327 DIYTLKELLGHSTIEMTQRY 346


>gi|89892756|ref|YP_516243.1| hypothetical protein DSY0010 [Desulfitobacterium hafniense Y51]
 gi|89332204|dbj|BAE81799.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 395

 Score = 40.4 bits (93), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 6/100 (6%)

Query: 113 KITTKHIRSGVES---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
           ++T +HI+   +S     HTP++ I +   +R   + AV++E +  NP   V+RPK+   
Sbjct: 111 EVTPQHIQDFHQSIFDEGHTPNTVIHYHAVLRRALQNAVKKEIIDSNPADRVDRPKKNVY 170

Query: 170 GIRPWTKEDMQQFKSFWSEGSQP-RLAFEFLLYSGLRCSD 208
             + ++ E+M     F      P  +  +   Y GLR S+
Sbjct: 171 HAQFYSAEEMMAL--FDEISDDPLEICVKLAAYYGLRRSE 208


>gi|251796343|ref|YP_003011074.1| tyrosine recombinase XerD [Paenibacillus sp. JDR-2]
 gi|247543969|gb|ACT00988.1| tyrosine recombinase XerD [Paenibacillus sp. JDR-2]
          Length = 296

 Score = 40.4 bits (93), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 41/213 (19%), Positives = 86/213 (40%), Gaps = 20/213 (9%)

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFW 186
           S+  + + S+R  F +     Y+ +NP + +E PK++ +     + E+    ++  +   
Sbjct: 68  STVSRHIASIRAFFHYLAVNGYIQLNPAIYIESPKQEKKEPSVLSMENAGLLLETPQPVT 127

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-------------TII 233
           + G + +   E L  +G+R S+     V  + + +  I+   +G               +
Sbjct: 128 AAGKRDKAMLELLYATGIRVSELISLNVDSVNSQLNIIRCVGSGMKERIIPFGRMAAAAL 187

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRK 291
              L +G  +LL  +   +   F+N    +M    F    K  A +AG+++  + H +R 
Sbjct: 188 DDYLQNGRAELLRQSE-DEPALFLNQLGTRMTRQGFWKMVKKYAKEAGISEEITPHTLRH 246

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK 324
             A    + GA    +    G   +   + YTK
Sbjct: 247 SFAAHLLENGADLRAVQELLGHADISTTQRYTK 279


>gi|91215199|ref|ZP_01252171.1| putative site-specific recombinase [Psychroflexus torquis ATCC
           700755]
 gi|91186804|gb|EAS73175.1| putative site-specific recombinase [Psychroflexus torquis ATCC
           700755]
          Length = 296

 Score = 40.4 bits (93), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 48/208 (23%), Positives = 85/208 (40%), Gaps = 28/208 (13%)

Query: 137 LTSMRVLFKWAVRQEYVAINPCL---SVERPKRKTEGIRPWTKEDMQQ-FKSFWSEGSQP 192
           L++++  FK+ ++ + +A+NP +   S++ PKR+ E       E +   F+    EG + 
Sbjct: 74  LSTLKTFFKFLLKIQVIAVNPMVQHKSLKLPKRQQEAFSVLELEKVSDYFEDVTFEGLRD 133

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ------KTGTIITVELPDGFMKLL- 245
            L  E L  +G+R     R  +  LQ +   +K Q      K      + L D    L+ 
Sbjct: 134 HLIIELLYATGMR-----RQELIDLQLSSLDLKQQQLKVRGKRNKERLIPLLDSISFLIE 188

Query: 246 -------AMTPIGKETFFINNDKQKMNATQFSI---WFKAKATKAGVNKSAHGVRKFSAT 295
                   + P G + F  +  K       + +   +F+  +TK  +  S H +R   AT
Sbjct: 189 RYLQERSVLLPQGSQLFVTSKGKAIYPNLVYRVVHSYFEKVSTKKKL--SPHLLRHAFAT 246

Query: 296 ISADAGATAHELMATYGWKTVDQAETYT 323
              D GA    +    G  ++   E YT
Sbjct: 247 HLLDKGADISAIKDLLGHSSLASTEVYT 274


>gi|186686835|ref|YP_001870028.1| phage integrase family protein [Nostoc punctiforme PCC 73102]
 gi|186469187|gb|ACC84987.1| phage integrase family protein [Nostoc punctiforme PCC 73102]
          Length = 335

 Score = 40.4 bits (93), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 53/246 (21%), Positives = 96/246 (39%), Gaps = 28/246 (11%)

Query: 61  INSPRKKPTTLKWL-ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119
           +   R+ PT ++W+ + E+ +S    +LA NSR  +E    + +  S +  Y ++  +H+
Sbjct: 26  LGETRRPPTDIRWVKVLEFLRS---NNLAPNSRKLYERELKRFLAWS-ELHYHELRPRHL 81

Query: 120 -------RSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQ--EYVAINPCLSVERPKRK 167
                  R  + +    P   SS    + +++  FKW      E ++ NP L ++  K  
Sbjct: 82  ALYKEYLRDEIRTDAGKPLSKSSINAGIAALKSFFKWMCYTYPEIISTNPTLGIKLEKVP 141

Query: 168 TEGIRPWTKEDMQQFKS---FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
               +  T E+M+Q  S      E  Q   A   +L  GLR  +  +  V      +  +
Sbjct: 142 LPPAQSLTPEEMEQVWSALELLGETKQRDTALVHILSHGLRAGEVVQLNVGSFDGKLLFL 201

Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS-IWFKAKATKAGVN 283
              KT     V L     ++LA        + +   +     T  S +     A+  G  
Sbjct: 202 PDTKTNEPRLVPLKKESREVLAQ-------YLLTRQQSGEVLTSLSPLMISHHASYKGER 254

Query: 284 KSAHGV 289
            S HG+
Sbjct: 255 LSYHGI 260


>gi|317494831|ref|ZP_07953242.1| tyrosine recombinase XerC [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316917156|gb|EFV38504.1| tyrosine recombinase XerC [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 303

 Score = 40.0 bits (92), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 32/138 (23%), Positives = 60/138 (43%), Gaps = 16/138 (11%)

Query: 94  SFESYFDQ------IIRKSGDFDYRKITTKHIR--SGVESRKHTPSSAIQF-LTSMRVLF 144
           + ESY  Q      I+  SG  D+R++ +  +R  +    R    +++I   L+S+R   
Sbjct: 29  TIESYHHQLMAIIEIVSASGLRDWRQLDSNQVRMITARSKRMGLEAASIALRLSSLRSFL 88

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP-----RLAFEFL 199
            W V Q  +++NP   +  PK+     +    +D+ +      + S P     R   E +
Sbjct: 89  DWQVSQGVMSVNPAKGISAPKQARHLPKNLDVDDVNRLLEI--DSSDPLAVRDRTMLEVM 146

Query: 200 LYSGLRCSDSCRAGVQHL 217
             +GLR S+      +H+
Sbjct: 147 YGAGLRLSELVGLDCRHM 164


>gi|167580360|ref|ZP_02373234.1| putative phage integrase [Burkholderia thailandensis TXDOH]
          Length = 394

 Score = 40.0 bits (92), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 44/194 (22%), Positives = 79/194 (40%), Gaps = 13/194 (6%)

Query: 53  GSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYR 112
           G+ P  E      +K  +++ LI++YR+     +LA +++ S+    D++ R  G    R
Sbjct: 67  GTNPAVEKRKERARKDWSVRQLIADYRERV-LVTLANSTQRSYGRNLDRVERGMGSLSVR 125

Query: 113 KITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
            +    + + +E  K            ++ +FK AV +  +  NPC  V        G R
Sbjct: 126 VVGAADVVAEIERTKLGWVETFTLWCVLKAIFKHAVGKRLIDANPCAGV--ALEAIIGKR 183

Query: 173 PWTKEDMQQFKSFWSEGSQPRL------AFEFLLYSGLRCSD---SCRAGVQHLQNNIFS 223
           P  ++ +       S      +      A    L +G+R S+   S RA + HL    + 
Sbjct: 184 PPVRQRLMLTHEELSVLMNANMRDVNLYAVRIALATGVRISELYTSLRANL-HLDEARWH 242

Query: 224 IKTQKTGTIITVEL 237
           I   KTG  + + L
Sbjct: 243 IPASKTGPAMDIPL 256


>gi|126741189|ref|ZP_01756869.1| putative integrase for prophage CP-933U [Roseobacter sp. SK209-2-6]
 gi|126717712|gb|EBA14434.1| putative integrase for prophage CP-933U [Roseobacter sp. SK209-2-6]
          Length = 313

 Score = 40.0 bits (92), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 54/264 (20%), Positives = 104/264 (39%), Gaps = 28/264 (10%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVESRKH 128
           +I  Y+ SAH+  LA  ++  +E Y D +  + G      F+ ++  ++ IR+  +   H
Sbjct: 16  VIRRYKNSAHFKILAPRTKDDYEKYLDSLEEEFGPDPIMMFEEKEALSE-IRTWKDQWSH 74

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEY-VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           +P       + +  L  WA  ++  +  +  + + R  +       W  E++Q  K   +
Sbjct: 75  SPRQYDYATSIVTRLLNWAKAEDTSIVTHFHMDIARIYKSKRAHLVWLPEEIQALKDVAN 134

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVELPDGFM 242
           E  + R+        GL   D      +H+Q       +F  K  KTG  + + +     
Sbjct: 135 E-RETRIVV-AASEGGLTPQDIGLLKREHVQRTPKGRRLF-FKRTKTGNPVAIPVTPALA 191

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFS-----------IWFKAKATKAGVNKSAH--GV 289
           +L+  TP G+E   ++ +  ++   + S              K    K  +    H   +
Sbjct: 192 ELIDNTPKGQEYLVVSLEGHRLQPERASGIVRDLRNRVNALAKDDPAKYSIRDELHLYDM 251

Query: 290 RKFSATISADAGATAHELMATYGW 313
           R  +AT    AG +  E+  T GW
Sbjct: 252 RGTAATELLRAGCSLEEIAITMGW 275


>gi|17986820|ref|NP_539454.1| integrase/recombinase [Brucella melitensis bv. 1 str. 16M]
 gi|17982454|gb|AAL51718.1| integrase/recombinase [Brucella melitensis bv. 1 str. 16M]
          Length = 116

 Score = 40.0 bits (92), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 29/53 (54%)

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
           HG+RK    I A+ GA+  ++M T G   +  AE YT+ A++ RL      R+
Sbjct: 57  HGLRKTLGKILAEGGASTRQIMDTLGHDDIAHAELYTREAEQARLATDGMSRV 109


>gi|255305195|ref|ZP_05349367.1| phage integrase family protein [Clostridium difficile ATCC 43255]
          Length = 351

 Score = 40.0 bits (92), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 5/100 (5%)

Query: 113 KITTKHIRSGVESRKHTPSSAIQFLT---SMRVLFKWAVRQEYVAINPC-LSVERPKRKT 168
           +IT KHIR        +  S     T    +  +  +AV+   +  NP  L+    K+  
Sbjct: 103 EITAKHIRKWQNELLQSDYSQTYIKTINNQLVAILNYAVKYYNLPSNPAHLAGSIGKKNA 162

Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD 208
           + ++ WT ++ ++F  F     +PRLAFE L ++GLR  +
Sbjct: 163 DEMQFWTLDEFKKFMEF-ENKPEPRLAFEILFWAGLRLGE 201


>gi|288928808|ref|ZP_06422654.1| integrase/recombinase XerD [Prevotella sp. oral taxon 317 str.
           F0108]
 gi|288329792|gb|EFC68377.1| integrase/recombinase XerD [Prevotella sp. oral taxon 317 str.
           F0108]
          Length = 304

 Score = 40.0 bits (92), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 48/221 (21%), Positives = 87/221 (39%), Gaps = 19/221 (8%)

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
           + +  ++  P S  + L+ +R  FK+ +   ++  +P   +  P  +       +  ++ 
Sbjct: 64  ASLHDQRIMPRSQARILSGVRSFFKFLLLDGFIDADPTELLVSPHVRNALPDVLSTAEVD 123

Query: 181 QFK-----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---I 232
           + +     S W EG + R   E L   GLR S+     + +L      ++    G    +
Sbjct: 124 RLEASIDLSKW-EGQRNRAIVEVLFSCGLRVSELVNLKLSNLYVEEKFVRVTGKGDKERL 182

Query: 233 ITV------ELPDGFMKLLAM--TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284
           + +      EL   F    AM   P  ++  F+N     +  T   I  K +A  AG+ K
Sbjct: 183 VPISSRALDELNAWFADRNAMRIKPGEEDYVFLNRRGAHLTRTMILIMIKRQAVAAGITK 242

Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
             S H +R   AT   + GA    + A  G + +   E YT
Sbjct: 243 TISPHTLRHSFATALLEGGADLIAIQAMMGHEDIATTEIYT 283


>gi|315282996|ref|ZP_07871279.1| tyrosine recombinase XerD [Listeria marthii FSL S4-120]
 gi|313613367|gb|EFR87228.1| tyrosine recombinase XerD [Listeria marthii FSL S4-120]
          Length = 297

 Score = 40.0 bits (92), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 46/213 (21%), Positives = 88/213 (41%), Gaps = 24/213 (11%)

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           S  +++ S+R  F + +    ++ +P + +E PK+     +    +D+++  S  S+ S 
Sbjct: 70  SVARYIASLRSFFHYLMHDGKMSHDPMIQIETPKQAQSLPKVLNLDDVEKLLS-SSDTST 128

Query: 192 P-----RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-------------TII 233
           P     +   E L  +GLR ++  R  +  L  ++  I+T   G             T++
Sbjct: 129 PLGLRDQAMMEILYATGLRVTELVRLKMDDLHLHMGFIQTIGKGDKERIIPLGKTATTVL 188

Query: 234 TVELPDGFMKLLAMTPIGKETF-FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290
              L +   KL    P  +  F F+N+  Q +    F    K  A ++G+ K  + H +R
Sbjct: 189 EQYLEEARPKL--RRPKYRNDFVFLNHHGQGLTRQGFWKILKGIAKESGIEKPITPHTLR 246

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYT 323
              AT   + GA    +    G   +   + YT
Sbjct: 247 HSFATHLLENGADLRSVQELLGHADISTTQIYT 279


>gi|82777635|ref|YP_403984.1| integrase [Shigella dysenteriae Sd197]
 gi|81241783|gb|ABB62493.1| integrase [Shigella dysenteriae Sd197]
          Length = 351

 Score = 40.0 bits (92), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 33/147 (22%), Positives = 64/147 (43%), Gaps = 2/147 (1%)

Query: 93  ISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQ 150
           + + S    I RK  D     I+TK + + + +   +   +SA    +++  +F+ A+ +
Sbjct: 92  LDYASKIRAIRRKLPDKPLTDISTKEVAAMLNTYVAEGKAASAKLIRSTLVDVFREAIAE 151

Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210
            +VA NP  +    K +    R    E ++ + +        RLA +  + +G R  D C
Sbjct: 152 GHVATNPVTATRTAKSEVRRSRLTANEYVEIYHAAEPLPIWLRLAMDLAVITGQRVGDLC 211

Query: 211 RAGVQHLQNNIFSIKTQKTGTIITVEL 237
           R     + +N   I+  KTG  + + L
Sbjct: 212 RMKWSDINDNHLHIEQGKTGAKLAIPL 238


>gi|148559335|ref|YP_001259359.1| phage integrase family site specific recombinase [Brucella ovis
           ATCC 25840]
 gi|148370592|gb|ABQ60571.1| site-specific recombinase, phage integrase family [Brucella ovis
           ATCC 25840]
          Length = 125

 Score = 40.0 bits (92), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 29/53 (54%)

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
           HG+RK    I A+ GA+  ++M T G   +  AE YT+ A++ RL      R+
Sbjct: 66  HGLRKTLGKILAEGGASTRQIMDTLGHDDIAHAELYTREAEQARLATDGMSRV 118


>gi|254831444|ref|ZP_05236099.1| hypothetical protein Lmon1_08823 [Listeria monocytogenes 10403S]
 gi|284802400|ref|YP_003414265.1| hypothetical protein LM5578_2156 [Listeria monocytogenes 08-5578]
 gi|284995542|ref|YP_003417310.1| hypothetical protein LM5923_2107 [Listeria monocytogenes 08-5923]
 gi|284057962|gb|ADB68903.1| hypothetical protein LM5578_2156 [Listeria monocytogenes 08-5578]
 gi|284061009|gb|ADB71948.1| hypothetical protein LM5923_2107 [Listeria monocytogenes 08-5923]
          Length = 297

 Score = 40.0 bits (92), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 46/216 (21%), Positives = 89/216 (41%), Gaps = 24/216 (11%)

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           +P S  +++ S+R  F + +    ++ +P + +E PK+     +    +D+++  S  S+
Sbjct: 67  SPRSVARYIASLRSFFHYLMHDGKMSHDPMIQIETPKQAKGLPKVLNLDDVEKLLS-SSD 125

Query: 189 GSQP-----RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG------------- 230
            S P     +   E L  +GLR ++     +  L  ++  I+T   G             
Sbjct: 126 TSTPLGLRDQAMMEILYATGLRVTELVSLKMDDLHLHMGFIQTIGKGDKERIIPLGKTAT 185

Query: 231 TIITVELPDGFMKLLAMTPIGKETF-FINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287
           T++   L +   KL    P  +  F F+N+  Q +    F    K  A ++G+ K  + H
Sbjct: 186 TVLEKYLEEARPKL--RRPKYRNDFVFLNHHGQGLTRQGFWKILKGIAKESGIEKPITPH 243

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
            +R   AT   + GA    +    G   +   + YT
Sbjct: 244 TLRHSFATHLLENGADLRSVQELLGHADISTTQIYT 279


>gi|217963893|ref|YP_002349571.1| tyrosine recombinase XerD [Listeria monocytogenes HCC23]
 gi|290892115|ref|ZP_06555111.1| integrase/recombinase XerD [Listeria monocytogenes FSL J2-071]
 gi|217333163|gb|ACK38957.1| tyrosine recombinase XerD [Listeria monocytogenes HCC23]
 gi|290558238|gb|EFD91756.1| integrase/recombinase XerD [Listeria monocytogenes FSL J2-071]
 gi|307571537|emb|CAR84716.1| integrase/recombinase [Listeria monocytogenes L99]
          Length = 297

 Score = 40.0 bits (92), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 46/216 (21%), Positives = 89/216 (41%), Gaps = 24/216 (11%)

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           +P S  +++ S+R  F + +    ++ +P + +E PK+     +    +D+++  S  S+
Sbjct: 67  SPRSVARYIASLRSFFHYLMHDGKMSHDPMIQIETPKQAQGLPKVLNLDDVEKLLS-SSD 125

Query: 189 GSQP-----RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG------------- 230
            S P     +   E L  +GLR ++     +  L  ++  I+T   G             
Sbjct: 126 TSTPLGLRDQAMMEILYATGLRVTELVSLKMDDLHLHMGFIQTIGKGDKERIIPLGKTAT 185

Query: 231 TIITVELPDGFMKLLAMTPIGKETF-FINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287
           T++   L +   KL    P  +  F F+N+  Q +    F    K  A ++G+ K  + H
Sbjct: 186 TVLEKYLEEARPKL--RRPKYRNDFVFLNHHGQGLTRQGFWKILKGIAKESGIEKPITPH 243

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
            +R   AT   + GA    +    G   +   + YT
Sbjct: 244 TLRHSFATHLLENGADLRSVQELLGHADISTTQIYT 279


>gi|119869100|ref|YP_939052.1| phage integrase family protein [Mycobacterium sp. KMS]
 gi|119695189|gb|ABL92262.1| phage integrase family protein [Mycobacterium sp. KMS]
          Length = 407

 Score = 40.0 bits (92), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 51/213 (23%), Positives = 86/213 (40%), Gaps = 25/213 (11%)

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
           E R  +PS  IQ    +  + ++AV+ +++  NP   +E P++     R  T E +Q+  
Sbjct: 149 EGRGLSPSRVIQAHQVVSQVLRYAVKAKHLPANPADGIELPRKPEVEQRYLTHEQLQRLA 208

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSC--RAGVQHL-------QNNIFSIKTQ------- 227
                  + R     L Y GLR  ++   R G  +L       + ++ ++  Q       
Sbjct: 209 ---VASGRFRTFVLVLGYCGLRFGEAAALRVGDVNLSSRRIRIRRSVTAVTGQGLVEGPT 265

Query: 228 KTGTIITVELPDGFMKLLAMTPIG----KETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
           K  +  TV +P  F+  L  T +G     E  F +     +   +    F A A   GV 
Sbjct: 266 KNHSARTVPVPK-FLAPLIETEVGGRVDDELLFPSRRGGYLTEGEVRWVFDAAAVAVGVT 324

Query: 284 K-SAHGVRKFSATISADAGATAHELMATYGWKT 315
             + H +R   A+++  AGA    L    G KT
Sbjct: 325 GLTPHELRHTCASLAIAAGANVKVLQTLLGHKT 357


>gi|218263976|ref|ZP_03477907.1| hypothetical protein PRABACTJOHN_03597 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222387|gb|EEC95037.1| hypothetical protein PRABACTJOHN_03597 [Parabacteroides johnsonii
           DSM 18315]
          Length = 382

 Score = 40.0 bits (92), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 55/248 (22%), Positives = 106/248 (42%), Gaps = 21/248 (8%)

Query: 107 GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
           G  D+ + T ++ +S    ++ +P +   + +++  +   AV++  +  NP  S+ER  R
Sbjct: 139 GFIDFIEHTYRNTKSPDNPKEMSPHTLHLYQSTLVRMLNAAVKEGVLDRNPFYSLERKDR 198

Query: 167 --KTEGIRPW-TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN--- 220
             K +  + + TKE++  F    +     + AF F  ++GLR SD      + ++     
Sbjct: 199 IGKQQAEKEYLTKEELMAFAEAPTVNETTKRAFLFCCFTGLRYSDVSALTWRDIRQGDNG 258

Query: 221 -IFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI---WFKA 275
            + S+K  QKTG  + + L    + LL      K +      ++  + T  S      K 
Sbjct: 259 WMVSVKAMQKTGKQVVIPLNQSAISLLPDRNGCKPS------QKVFDMTCLSSCNKCLKK 312

Query: 276 KATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
            A  AG+ K  S H  R   A ++  AG   + +    G  +++  + Y      +   +
Sbjct: 313 IAAAAGIEKKISYHTSRHTFAVLALAAGGDIYTVGKLLGHTSINSTQVYADAV--METKV 370

Query: 334 KNSRRISS 341
           +   RISS
Sbjct: 371 EAISRISS 378


>gi|317405888|gb|EFV86170.1| integrase/recombinase [Achromobacter xylosoxidans C54]
          Length = 327

 Score = 40.0 bits (92), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 51/212 (24%), Positives = 85/212 (40%), Gaps = 20/212 (9%)

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSV---ERPKRKTEGIRPWTKEDMQQFKSFWS 187
           ++A + L ++R  + WA+R+   A +PCL++   ++P R  + +     + + +      
Sbjct: 99  TTANRRLAALRRFYAWALREHRAAHDPCLTLVAAKQPPRLPKTLSEQQVDALLRAPDLNE 158

Query: 188 -EGSQPRLAFEFLLYSGLRCSD--SCRAGVQHLQNNIFSIKTQKTGTIITVELP------ 238
             G + R   E L  +GLR S+    RA    L   +  +   K G    V L       
Sbjct: 159 PRGLRDRAMLEMLYATGLRVSELVGVRALDVSLNEGVVRVVLGKGGKDRLVPLGAEAAHW 218

Query: 239 -DGFMKL----LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRK 291
            D +MK     LA   +  +  FI    + M+   F    K  A  AGV+   S H +R 
Sbjct: 219 IDQYMKTARPELAAGRV-SDALFITGRAEAMSRQAFWQLVKKYAVLAGVHAPLSPHVLRH 277

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYT 323
             AT   + GA    +    G   +   + YT
Sbjct: 278 AFATHLLNHGADLRVVQMLLGHADISTTQIYT 309


>gi|300907025|ref|ZP_07124694.1| phage integrase, SAM-like domain protein [Escherichia coli MS 84-1]
 gi|301304025|ref|ZP_07210142.1| phage integrase, SAM-like domain protein [Escherichia coli MS
           124-1]
 gi|331682197|ref|ZP_08382819.1| integrase [Escherichia coli H299]
 gi|300401246|gb|EFJ84784.1| phage integrase, SAM-like domain protein [Escherichia coli MS 84-1]
 gi|300840632|gb|EFK68392.1| phage integrase, SAM-like domain protein [Escherichia coli MS
           124-1]
 gi|315257687|gb|EFU37655.1| phage integrase, SAM-like domain protein [Escherichia coli MS 85-1]
 gi|331080621|gb|EGI51797.1| integrase [Escherichia coli H299]
          Length = 356

 Score = 40.0 bits (92), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 62/295 (21%), Positives = 110/295 (37%), Gaps = 35/295 (11%)

Query: 25  FRKGHGRRIRLPYPHESTFIPAYMSALTGST--PKREYINSPRKKPTTLKWLISEYRKSA 82
           F  G  RRI +     +  I A +   +G    P    INS      TL   +  Y K  
Sbjct: 35  FGLGRDRRIAI-----TEAIQANIELFSGHKHKPLTARINS--DNSVTLHSWLDRYEKIL 87

Query: 83  HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSM 140
               +   + I++ S    I R   D     ITTK I + +     +   +SA    +++
Sbjct: 88  ASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAMLNGYIDEGKAASAKLIRSTL 147

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200
              F+ A+ + ++  NP  +    K +    R    E ++ +++  S     RLA E  +
Sbjct: 148 SDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEYLKIYQAAESSPCWLRLAMELAV 207

Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV--------------ELPDGFMKLLA 246
            +G R  D C      + +    ++  KTG  I +              E  D   K+L 
Sbjct: 208 VTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTTLHVDALGISMKETLDKCKKIL- 266

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA-----HGVRKFSATI 296
               G ET   +  ++ +++   S +F      +G++        H +R  SA +
Sbjct: 267 ----GGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPPTFHELRSLSARL 317


>gi|329963640|ref|ZP_08301114.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
 gi|328528050|gb|EGF55031.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
          Length = 379

 Score = 40.0 bits (92), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 50/220 (22%), Positives = 85/220 (38%), Gaps = 16/220 (7%)

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC---LSVERPKRKTEGIRPWTKEDMQ 180
           E +K   ++ + +   +R     AV +EY+A NP     S E+PKR+       T ++++
Sbjct: 154 EEKKLHANTQLHYFKMLRYCLNHAVSEEYIACNPIDKMKSDEKPKRRKADREYLTIDELR 213

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-----NNIFSIKTQKTGTIITV 235
                    S  + AF F  + GLR  D      + +      N   +I  QKT   I++
Sbjct: 214 YLVRTPFYNSLLKKAFLFSCFCGLRHCDIVALEWKDIHYDTNGNASINIVQQKTHEAISL 273

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ--FSIWFKAKATKAGVNKSA--HGVRK 291
            L    +K L      ++T  I      +  +      W    A +AG+ K    H  R 
Sbjct: 274 PLSPEAVKYLPNREKAQDTDKIFKGLISLGRSNEILDRW----AKQAGILKHVTFHVARH 329

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
             AT+    GA  + +    G   +   + Y K  D  ++
Sbjct: 330 THATMMLTLGADLYTISKLLGHTNIQTTQIYAKLVDESKM 369


>gi|291286568|ref|YP_003503384.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809]
 gi|290883728|gb|ADD67428.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809]
          Length = 390

 Score = 40.0 bits (92), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 46/246 (18%), Positives = 94/246 (38%), Gaps = 22/246 (8%)

Query: 93  ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEY 152
           I++ S  + ++    +     I   HIR+ +++ + +P +    +  +  +   AV  + 
Sbjct: 110 ITYTSSINNLLATFENMSICDIKPAHIRTYIKNSEVSPKTLKNHVGVLSSILSAAVEDDL 169

Query: 153 VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA--FEFLLYSGLRCSDSC 210
           +  NPC SV+ P   +  + P + E++    + W +   P +   F    ++G+R  +  
Sbjct: 170 IPKNPCTSVKLPHISSVEVDPLSLEEITMILN-WMKSHHPNMLAFFAVAFFTGMRTGEIM 228

Query: 211 RAGVQHLQNNIFSIKTQKTGTI----------------ITVELPDGFMKLLAMTPIGKET 254
                 +  N  +I   +T T                 I  EL +        T +  E 
Sbjct: 229 GLQWGDIDFNSHTITISRTITAGKLKHRTKTADSRTVDILTELDEYLSYHKQFTYMKSEW 288

Query: 255 FFINNDKQKMNATQFSI--WFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATY 311
            F+  + +  N T   I  ++K      G+  ++ +  R   A +  D G   + L    
Sbjct: 289 LFLTYENKPFNKTDNIIKTYWKPCLKALGIKYRTLYQTRHTFACLMLDVGENINWLKKML 348

Query: 312 GWKTVD 317
           G KT+D
Sbjct: 349 GHKTLD 354


>gi|16803994|ref|NP_465479.1| hypothetical protein lmo1955 [Listeria monocytogenes EGD-e]
 gi|47097098|ref|ZP_00234668.1| integrase/recombinase XerD [Listeria monocytogenes str. 1/2a F6854]
 gi|224498595|ref|ZP_03666944.1| hypothetical protein LmonF1_02414 [Listeria monocytogenes Finland
           1988]
 gi|224501245|ref|ZP_03669552.1| hypothetical protein LmonFR_01770 [Listeria monocytogenes FSL
           R2-561]
 gi|254827160|ref|ZP_05231847.1| integrase/recombinase XerD [Listeria monocytogenes FSL N3-165]
 gi|254899348|ref|ZP_05259272.1| hypothetical protein LmonJ_06029 [Listeria monocytogenes J0161]
 gi|254912513|ref|ZP_05262525.1| tyrosine recombinase XerD [Listeria monocytogenes J2818]
 gi|254936840|ref|ZP_05268537.1| integrase/recombinase XerD [Listeria monocytogenes F6900]
 gi|255028942|ref|ZP_05300893.1| hypothetical protein LmonL_06711 [Listeria monocytogenes LO28]
 gi|34222939|sp|Q8Y5V0|XERD_LISMO RecName: Full=Tyrosine recombinase xerD
 gi|16411408|emb|CAD00033.1| lmo1955 [Listeria monocytogenes EGD-e]
 gi|47014543|gb|EAL05506.1| integrase/recombinase XerD [Listeria monocytogenes str. 1/2a F6854]
 gi|258599542|gb|EEW12867.1| integrase/recombinase XerD [Listeria monocytogenes FSL N3-165]
 gi|258609436|gb|EEW22044.1| integrase/recombinase XerD [Listeria monocytogenes F6900]
 gi|293590498|gb|EFF98832.1| tyrosine recombinase XerD [Listeria monocytogenes J2818]
          Length = 297

 Score = 40.0 bits (92), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 46/216 (21%), Positives = 89/216 (41%), Gaps = 24/216 (11%)

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           +P S  +++ S+R  F + +    ++ +P + +E PK+     +    +D+++  S  S+
Sbjct: 67  SPRSVARYIASLRSFFHYLMHDGKMSHDPMIQIETPKQAQGLPKVLNLDDVEKLLS-SSD 125

Query: 189 GSQP-----RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG------------- 230
            S P     +   E L  +GLR ++     +  L  ++  I+T   G             
Sbjct: 126 TSTPLGLRDQAMMEILYATGLRVTELVSLKMDDLHLHMGFIQTIGKGDKERIIPLGKTAT 185

Query: 231 TIITVELPDGFMKLLAMTPIGKETF-FINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287
           T++   L +   KL    P  +  F F+N+  Q +    F    K  A ++G+ K  + H
Sbjct: 186 TVLEKYLEEARPKL--RRPKYRNDFVFLNHHGQGLTRQGFWKILKGIAKESGIEKPITPH 243

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
            +R   AT   + GA    +    G   +   + YT
Sbjct: 244 TLRHSFATHLLENGADLRSVQELLGHADISTTQIYT 279


>gi|301308338|ref|ZP_07214292.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           20_3]
 gi|300833808|gb|EFK64424.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           20_3]
          Length = 380

 Score = 40.0 bits (92), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 89/217 (41%), Gaps = 27/217 (12%)

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-PWTKED---MQQFKS 184
           +P +A  + T++R     AVR+  +A NP   +E     TE I+ P +K D   +++ K 
Sbjct: 161 SPKTAHSYYTTLRTALNEAVRENLIASNPWYRLE----MTEKIKVPESKRDFLTIEEIKR 216

Query: 185 FWSE---GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVEL 237
             +      Q R A+ F  + GLR SD  +   + L  +      S+   KT   + + L
Sbjct: 217 MMATPFFNEQVRQAYLFSCFCGLRISDIRKLRWRDLSMSGGQWRASVVMTKTIHPVYIPL 276

Query: 238 PDGFMKLLA----MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRK 291
               +K L      TP G     + N+          +  K  A KAGV K+   H  R 
Sbjct: 277 SSQAVKWLPERGDCTPDGLVFGGLPNE------GNLCVNLKNWAEKAGVKKNVTFHTARH 330

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
             A +    GA  + +    G ++V   + Y K  D+
Sbjct: 331 SCAVLLLTLGADIYTVSKILGHRSVRSTQVYAKIVDK 367


>gi|320179493|gb|EFW54448.1| Phage integrase [Shigella boydii ATCC 9905]
          Length = 300

 Score = 40.0 bits (92), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 33/147 (22%), Positives = 64/147 (43%), Gaps = 2/147 (1%)

Query: 93  ISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQ 150
           + + S    I RK  D     I+TK + + + +   +   +SA    +++  +F+ A+ +
Sbjct: 98  LDYASKIRAIRRKLPDKPLTDISTKEVAAMLNTYVAEGKAASAKLIRSTLVDVFREAIAE 157

Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210
            +VA NP  +    K +    R    E ++ + +        RLA +  + +G R  D C
Sbjct: 158 GHVATNPVTATRTAKSEVRRSRLTANEYVEIYHAAEPLPIWLRLAMDLAVITGQRVGDLC 217

Query: 211 RAGVQHLQNNIFSIKTQKTGTIITVEL 237
           R     + +N   I+  KTG  + + L
Sbjct: 218 RMKWSDINDNHLHIEQGKTGAKLAIPL 244


>gi|237727927|ref|ZP_04558408.1| site-specific tyrosine recombinase XerC [Citrobacter sp. 30_2]
 gi|226910376|gb|EEH96294.1| site-specific tyrosine recombinase XerC [Citrobacter sp. 30_2]
          Length = 300

 Score = 40.0 bits (92), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 45/215 (20%), Positives = 86/215 (40%), Gaps = 23/215 (10%)

Query: 93  ISFESYFDQIIRKSGDF---DYRKITTKHIRS-GVESRKHT--PSSAIQFLTSMRVLFKW 146
           ++++   D II  +G+     +++     +RS  V SR+    P+S    L+++R  F W
Sbjct: 29  LNYQRQLDAIIALAGETGLQSWQQCDAAMVRSFAVRSRRKGLGPASLALRLSALRSFFDW 88

Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP-----RLAFEFLLY 201
            V Q  +  NP  SV  PK      +    +D+ +      + + P     R   E +  
Sbjct: 89  LVNQGELKANPAKSVSAPKAPRHLPKNIDVDDVNRLLDI--DLNDPLAVRDRAMLEVMYG 146

Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG---------FMKLLAMTPIGK 252
           +GLR S+     ++HL  +   +     G+     LP G         ++ L  +     
Sbjct: 147 AGLRLSELVGLDIKHLDLDTGEVWVMGKGS-KERRLPIGRNAVAWIEHWLDLRGLFGSDD 205

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAH 287
           +  F++   ++++A      F     K G+N   H
Sbjct: 206 DALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVH 240


>gi|310778330|ref|YP_003966663.1| integrase family protein [Ilyobacter polytropus DSM 2926]
 gi|309747653|gb|ADO82315.1| integrase family protein [Ilyobacter polytropus DSM 2926]
          Length = 297

 Score = 40.0 bits (92), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 4/81 (4%)

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQP 192
           ++S+R  FK+   Q Y+  NP + +  P  K +     TKE++ + +       + G + 
Sbjct: 80  ISSLRTFFKYLKNQGYIEKNPTILLTGPAFKADLPEILTKEEIDRIREVIDIEKTNGIRD 139

Query: 193 RLAFEFLLYSGLRCSDSCRAG 213
           RL  E L  SG+R S+    G
Sbjct: 140 RLIVELLYSSGIRTSELLSLG 160


>gi|268608336|ref|ZP_06142063.1| hypothetical protein RflaF_02413 [Ruminococcus flavefaciens FD-1]
          Length = 396

 Score = 40.0 bits (92), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 60/135 (44%), Gaps = 18/135 (13%)

Query: 107 GDFDYRKITTKHIRSGVES-----------RKHTPSSAIQFLTSMRVLFKWAVRQEYVAI 155
           G     KIT + I++ V S           +   P +    L+ +  +F +AV+   V  
Sbjct: 105 GHMRMDKITPRQIQAFVNSLSREGANERTGKPLAPKTIRHNLSFVSDVFSYAVKMGVVND 164

Query: 156 NPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-SEGSQPRLAFEFLLYSGLRCSDSCRAGV 214
           NPC  V  PK      + +T E +Q+F S   +E  + R  F  +++SG R  +    G+
Sbjct: 165 NPCTKVTLPKNNQAEKKIYTPEQVQRFLSLLNNEPLKYRTFFNLMIFSGFRRGEML--GL 222

Query: 215 Q----HLQNNIFSIK 225
           +      +NNI S++
Sbjct: 223 EWKDVDFENNIISVR 237


>gi|169834527|ref|YP_001695426.1| phage integrase family site specific recombinase [Streptococcus
           pneumoniae Hungary19A-6]
 gi|168997029|gb|ACA37641.1| site-specific recombinase, phage integrase family [Streptococcus
           pneumoniae Hungary19A-6]
          Length = 377

 Score = 40.0 bits (92), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 33/140 (23%), Positives = 65/140 (46%), Gaps = 9/140 (6%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT--KHIRSGVESRKHTPSSAI- 134
           +RK+++  +   N     + YF  ++   G   Y  I    +H+R  V      P S   
Sbjct: 78  HRKASYINTQDNNYNKHIKDYF-SMVDNVGKLTYEDIYQFREHLRQKVAKNSDKPLSTNT 136

Query: 135 --QFLTSMRVLFKWAVRQEYVAINPCLSVER-PKRKTEGIRPWTKEDMQQFKS-FWSEGS 190
             + +  ++ +F   +R+ Y   NP   +++ P  KT+ ++ WT ++ Q F + F +E  
Sbjct: 137 INKIMILLKKIFDVGLRKGYYTSNPANLIKKLPIEKTK-MQFWTVKEFQHFLTLFETEEY 195

Query: 191 QPRLAFEFLLYSGLRCSDSC 210
             +L F  L ++GLR  ++ 
Sbjct: 196 NIKLLFTVLFFTGLRLGEAL 215


>gi|257881842|ref|ZP_05661495.1| integrase [Enterococcus faecium 1,231,502]
 gi|294619302|ref|ZP_06698771.1| integrase [Enterococcus faecium E1679]
 gi|257817500|gb|EEV44828.1| integrase [Enterococcus faecium 1,231,502]
 gi|291594462|gb|EFF25870.1| integrase [Enterococcus faecium E1679]
          Length = 382

 Score = 40.0 bits (92), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 68/147 (46%), Gaps = 16/147 (10%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE--SRKHTP 130
           WL S Y+K+    S +  ++I F  +   I  K G+    KI T + +  V   S K T 
Sbjct: 76  WLES-YKKTVKESSYS-RTKIIFNKH---IYPKFGNIKLSKINTAYCQKVVNDWSEKGTS 130

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLS--VERPKRKTE-GIRPWTKEDMQQFKSFWS 187
                F+  M  +FK+A+     + NP L+  + +P+ KTE  ++ +TKE ++ F +  S
Sbjct: 131 KQYPLFINYMNKVFKYAINIGLTSDNPTLNLLIPKPQIKTEKKLKLYTKEQLELFLNEVS 190

Query: 188 EGSQPRLA------FEFLLYSGLRCSD 208
           +   P         F  L +SG R  +
Sbjct: 191 QEQNPYFKNRDYTLFRLLAFSGCRIGE 217


>gi|312134835|ref|YP_004002173.1| integrase family protein [Caldicellulosiruptor owensensis OL]
 gi|311774886|gb|ADQ04373.1| integrase family protein [Caldicellulosiruptor owensensis OL]
          Length = 376

 Score = 40.0 bits (92), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 32/140 (22%), Positives = 70/140 (50%), Gaps = 14/140 (10%)

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199
           +R ++ +AV+ +YV  NP  +VE PK+  + ++ W  +++++ +  + +   P  A   L
Sbjct: 137 LREIYNFAVKWQYVTKNPFDNVETPKKDRKEMQVWNLDEIRKAEEVFRDT--PIFAHVML 194

Query: 200 -LYSGLRCSDSCRAGVQ----HLQNNIFSIKTQK---TGTIITVELP--DGFMKLLAMTP 249
            LY+G+R  + C  G++      +N + +++       G ++  E P  D  ++++A+T 
Sbjct: 195 ALYTGMRLGEVC--GLKWDDIDFKNKVCAVRRVAEYINGEVVIKEKPKTDKSLRIVALTD 252

Query: 250 IGKETFFINNDKQKMNATQF 269
              E       +Q  N  +F
Sbjct: 253 NLVEILKEEKKRQLENKLKF 272


>gi|29830251|ref|NP_824885.1| phage integrase [Streptomyces avermitilis MA-4680]
 gi|29607362|dbj|BAC71420.1| putative tyrosine-family recombinase/integrase [Streptomyces
           avermitilis MA-4680]
          Length = 393

 Score = 40.0 bits (92), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 55/228 (24%), Positives = 94/228 (41%), Gaps = 16/228 (7%)

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           HT ++A +    +R     AVR+E +  N    VE P+ K   IRPW+ E+   F    +
Sbjct: 132 HTAATAKESHRVLRTALTAAVREELITRNVASLVEPPRVKQREIRPWSLEETLSF--LEA 189

Query: 188 EGSQPRL-AFEFLLYSGLRCSD--SCRAGVQHLQNNIFSIKTQ---KTGTIITVELPDGF 241
             S P   AF   +  GLR  +    R     L N +  ++ Q   + GT+   +     
Sbjct: 190 ARSDPLYAAFVLAIAMGLRRGELGGLRWSDVDLDNRVVHVRQQTQRRRGTLYDDDPKSRR 249

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSI-WFKAK---ATKAGVNKSAHGVRKFSATIS 297
           ++++ M  +       +  +Q+    +  + W +A    AT+ G       V +    ++
Sbjct: 250 IRVVPMPALCIAPLRWHRLRQRETFARTGVAWCEAGYVFATRNGRPVEPRNVYRSFTRVA 309

Query: 298 ADAGATAHELM-ATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
           ADAG     L  A +G  T+  A      A R+ + I    +IS  +D
Sbjct: 310 ADAGLRVVRLHDARHGCATLLTAAGV---APRVIMEILGHSQISITMD 354


>gi|225864449|ref|YP_002749827.1| DNA integration/recombination/invertion protein [Bacillus cereus
           03BB102]
 gi|225788669|gb|ACO28886.1| site-specific recombinase, phage integrase family [Bacillus cereus
           03BB102]
          Length = 292

 Score = 40.0 bits (92), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 27/120 (22%), Positives = 57/120 (47%), Gaps = 5/120 (4%)

Query: 93  ISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL---FKWAV 148
           + + ++ +Q II   G     K+   HI+   ++      +    L   R+L      AV
Sbjct: 9   VGYRAFINQHIIPSIGMVALHKLNVMHIQKCYKTAIDRGIANNSVLLMHRILKSALNLAV 68

Query: 149 RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD 208
           +Q  ++ NP    E PK++   I+ WT+E++++F    S+ S+  + +   + +G+R  +
Sbjct: 69  KQNIISRNPADFAEIPKKERTSIQTWTEEEVKKF-LLHSQESRYHIGYLLAITTGMRMGE 127


>gi|309785081|ref|ZP_07679714.1| integrase [Shigella dysenteriae 1617]
 gi|308927451|gb|EFP72925.1| integrase [Shigella dysenteriae 1617]
          Length = 339

 Score = 39.7 bits (91), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 33/147 (22%), Positives = 64/147 (43%), Gaps = 2/147 (1%)

Query: 93  ISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQ 150
           + + S    I RK  D     I+TK + + + +   +   +SA    +++  +F+ A+ +
Sbjct: 80  LDYASKIRAIRRKLPDKPLTDISTKEVAAMLNTYVAEGKAASAKLIRSTLVDVFREAIAE 139

Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210
            +VA NP  +    K +    R    E ++ + +        RLA +  + +G R  D C
Sbjct: 140 GHVATNPVTATRTAKSEVRRSRLTANEYVEIYHAAEPLPIWLRLAMDLAVITGQRVGDLC 199

Query: 211 RAGVQHLQNNIFSIKTQKTGTIITVEL 237
           R     + +N   I+  KTG  + + L
Sbjct: 200 RMKWSDINDNHLHIEQGKTGAKLAIPL 226


>gi|25011358|ref|NP_735753.1| hypothetical protein gbs1314 [Streptococcus agalactiae NEM316]
 gi|76787522|ref|YP_329938.1| phage integrase family site specific recombinase [Streptococcus
           agalactiae A909]
 gi|77407140|ref|ZP_00784133.1| site-specific recombinase, phage integrase family [Streptococcus
           agalactiae H36B]
 gi|24412896|emb|CAD46973.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76562579|gb|ABA45163.1| site-specific recombinase, phage integrase family [Streptococcus
           agalactiae A909]
 gi|77174250|gb|EAO77126.1| site-specific recombinase, phage integrase family [Streptococcus
           agalactiae H36B]
          Length = 393

 Score = 39.7 bits (91), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 40/183 (21%), Positives = 76/183 (41%), Gaps = 27/183 (14%)

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
           K++P+ A       +    +A R  Y+   PC S++ PK K    + WT ED+++  + +
Sbjct: 134 KYSPNYAKGVWIRFKHCIGYAERLGYIDEFPCKSLDNPKGKRPDTKFWTLEDLKKVVATF 193

Query: 187 S----EGSQPRLAFEFLLYSGLRCSDS----------------CRAGVQHLQNNIFSIK- 225
                E      A     ++GLR S+                  ++ +++  N +F+ K 
Sbjct: 194 DLRDYEERHRFTAIWLYFFTGLRVSEGLSLIWSDIDFDKKLLHVQSTLEYEGNGVFTRKN 253

Query: 226 -TQKTGTIITVELPDGFMKLLA-----MTPIGKETFFINNDKQKMNATQFSIWFKAKATK 279
            T+ +  I  +EL D  + +L          G +++ +    + +N    S   K +A K
Sbjct: 254 PTKTSAGIRWIELDDETLNVLLRWRSIQVENGDDSYVLARFGKPLNKCTLSRILKRQAKK 313

Query: 280 AGV 282
           AGV
Sbjct: 314 AGV 316


>gi|188994249|ref|YP_001928501.1| putative integrase/recombinase XerD [Porphyromonas gingivalis ATCC
           33277]
 gi|188593929|dbj|BAG32904.1| putative integrase/recombinase XerD [Porphyromonas gingivalis ATCC
           33277]
          Length = 308

 Score = 39.7 bits (91), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 50/210 (23%), Positives = 88/210 (41%), Gaps = 19/210 (9%)

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SE 188
           S  + ++ ++  F++ V +EY+  +P   +E P+         T E++ +        ++
Sbjct: 70  SIARIISGVKSFFRFLVLEEYIEADPTELLEGPRIGVHLPTVLTIEEVDRLIGAIDPAAQ 129

Query: 189 GSQPRLAFEFLLYS-GLRCSDSCRAGVQHLQNNIFSIKTQKTG----------TIITVEL 237
           G+Q   A   +LYS GLR S+       +L  N   ++    G          T IT EL
Sbjct: 130 GAQRNRAILEILYSCGLRVSELTSLKFSNLFLNESFLRIDGKGRKQRLVPMSETAIT-EL 188

Query: 238 PDGFMKLLAMTPI-GKETF-FINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFS 293
                     TP+ G+E + F++N  + ++     +  K  A +AG+ KS   H  R   
Sbjct: 189 KRYLSDPERPTPVLGQEEYVFLSNRGKAISRIMVFVMIKKLAEEAGITKSISPHTFRHSF 248

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYT 323
           AT   + GA    +    G + +   E YT
Sbjct: 249 ATHLLEGGANLQAIQLMLGHENIATTEIYT 278


>gi|118477881|ref|YP_895032.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis str. Al Hakam]
 gi|229184697|ref|ZP_04311897.1| DNA integration/recombination/invertion protein [Bacillus cereus
           BGSC 6E1]
 gi|118417106|gb|ABK85525.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis str. Al Hakam]
 gi|228598801|gb|EEK56421.1| DNA integration/recombination/invertion protein [Bacillus cereus
           BGSC 6E1]
          Length = 292

 Score = 39.7 bits (91), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 27/120 (22%), Positives = 57/120 (47%), Gaps = 5/120 (4%)

Query: 93  ISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL---FKWAV 148
           + + ++ +Q II   G     K+   HI+   ++      +    L   R+L      AV
Sbjct: 9   VGYRAFINQHIIPSIGMVALHKLNVMHIQKCYKTAIDRGIANNSVLLMHRILKSALNLAV 68

Query: 149 RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD 208
           +Q  ++ NP    E PK++   I+ WT+E++++F    S+ S+  + +   + +G+R  +
Sbjct: 69  KQNIISRNPADFAEIPKKERTSIQTWTEEEVKKF-LLHSQESRYHIGYLLAITTGMRMGE 127


>gi|253572132|ref|ZP_04849536.1| integrase [Bacteroides sp. 1_1_6]
 gi|251838312|gb|EES66399.1| integrase [Bacteroides sp. 1_1_6]
          Length = 396

 Score = 39.7 bits (91), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 72/314 (22%), Positives = 119/314 (37%), Gaps = 55/314 (17%)

Query: 33  IRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSR 92
           I  P  + ++F+  +   +  S+ K     S R+   +   L+ EY+K   +  L     
Sbjct: 98  IEKPENNGNSFLTFFKEEVNNSSLKE----STRQNHLSTLELLQEYKKDIVFTDLT---- 149

Query: 93  ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEY 152
             F S FD  ++  G          H+ +  +  KH           ++     A+ +EY
Sbjct: 150 FEFVSSFDNYLQSKG---------YHLNTIAKHMKH-----------LKRYVNVAINKEY 189

Query: 153 VAINPCLSVERPKRKTEGIRP-WTKEDMQQFKSFWSEGSQPRL-----AFEFLLYSGLRC 206
           + I      +   +  EG     + E++ + +    EG   +L     AF F  Y+GLR 
Sbjct: 190 MDIQKYAFRKYKIKSIEGSHTHLSPEELNKMEEVNLEGKFTKLQKSKDAFLFCCYAGLRY 249

Query: 207 SDSCR---AGVQHLQNNIFSI-KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ 262
           SD      A +  L    + I K+ KTG  I V LP      L +   GK    + N K 
Sbjct: 250 SDFINLTAANIVELHQETWLIYKSVKTG--IDVRLP------LYLLFEGKGLRVLENYKD 301

Query: 263 KMNA-------TQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGW 313
            +N        +  +    A A  A ++K  S H  R  +AT+   +GA    +    G 
Sbjct: 302 DLNGFFRLKDNSNVNKDLNALAKLAEIDKRISFHTARHTNATLLIYSGANITTVQKLLGH 361

Query: 314 KTVDQAETYTKGAD 327
           K+V   + Y    D
Sbjct: 362 KSVKTTQVYANIMD 375


>gi|124268171|ref|YP_001022175.1| putative site specific integrase [Methylibium petroleiphilum PM1]
 gi|124260946|gb|ABM95940.1| putative site specific integrase [Methylibium petroleiphilum PM1]
          Length = 318

 Score = 39.7 bits (91), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 30/126 (23%), Positives = 51/126 (40%), Gaps = 11/126 (8%)

Query: 43  FIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFE---SYF 99
           F P+ +  L  ++         R K  TL++  +  R          N+R ++     +F
Sbjct: 2   FAPSQLELLPAASVPALLAPDARAKARTLEFFTAHIRNP--------NTRKAYARAGQHF 53

Query: 100 DQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL 159
                + G  D R++   H+   VE       S  Q L ++R LF W V  + + INP  
Sbjct: 54  ADWCARFGIGDVRQVQPVHVALYVEQLDLAAPSVKQRLAALRALFDWLVVGQVMPINPAA 113

Query: 160 SVERPK 165
           +V  P+
Sbjct: 114 AVRGPR 119


>gi|86137451|ref|ZP_01056028.1| site-specific recombinase, phage integrase family protein
           [Roseobacter sp. MED193]
 gi|85825786|gb|EAQ45984.1| site-specific recombinase, phage integrase family protein
           [Roseobacter sp. MED193]
          Length = 367

 Score = 39.7 bits (91), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 59/153 (38%), Gaps = 17/153 (11%)

Query: 111 YRKITTKHIRSGVESRKHTPSSAIQFLTS-----MRVLFKWAVRQEYVAINPCLSVERPK 165
           Y K+T   I  G E R H    + +   S     +R +F WAV +  +  NP   ++   
Sbjct: 127 YLKLTDVSIHHGRELRNHVSKKSTELRGSAVIRYIRPMFSWAVDESLIDENPWAGLKATA 186

Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRLA--FEFLLYSGLRCSDSCRAGVQHLQNNIFS 223
             T   R  T E+ Q+    W    +  L   F FL+ S  R  +        +Q N+++
Sbjct: 187 IATPRDRVLTNEEWQK---VWGATFKDNLGAYFRFLMLSAQRKDNVASMKWDEIQGNLWT 243

Query: 224 IKTQK-------TGTIITVELPDGFMKLLAMTP 249
           I  +K       +     V L    M++L   P
Sbjct: 244 IPAEKFKATKKESAKAHEVPLTPALMEILENQP 276


>gi|256854437|ref|ZP_05559801.1| predicted protein [Enterococcus faecalis T8]
 gi|256709997|gb|EEU25041.1| predicted protein [Enterococcus faecalis T8]
 gi|315029064|gb|EFT40996.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX4000]
          Length = 302

 Score = 39.7 bits (91), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 31/135 (22%), Positives = 60/135 (44%), Gaps = 9/135 (6%)

Query: 105 KSGDFDYRKITTKHIRSGV--ESRKHTPSSAIQFLTS-MRVLFKWAVRQEYVAINPCLSV 161
           KS + +  +I  K I+S +     K   +S I    S ++ LF + + ++Y+  NP + +
Sbjct: 59  KSINVEPSQIEKKQIKSWIIDMQEKEMQASTINVSVSRLKKLFDYMLIEKYIDYNPFVDI 118

Query: 162 ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA------FEFLLYSGLRCSDSCRAGVQ 215
           ER K + + I P    +++Q  +   +     +A         ++  GLR S+ C    +
Sbjct: 119 ERLKEQRKVIYPLNDYEIKQMLTVAKKHPYKHIAQRNVVILMLMIECGLRISEVCEIRDE 178

Query: 216 HLQNNIFSIKTQKTG 230
            + NN   I+  K  
Sbjct: 179 DIMNNQIIIRKSKNN 193


>gi|260588143|ref|ZP_05854056.1| integrase/recombinase XerD [Blautia hansenii DSM 20583]
 gi|260541670|gb|EEX22239.1| integrase/recombinase XerD [Blautia hansenii DSM 20583]
          Length = 294

 Score = 39.7 bits (91), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 52/264 (19%), Positives = 108/264 (40%), Gaps = 23/264 (8%)

Query: 90  NSRISFE---SYFDQIIRKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLTSMRVL 143
           N+ +S+E      +Q +++ G  ++ +++   + S +   E +    SS  + + S+R  
Sbjct: 21  NTEVSYERDLKKLEQFLKQEGILEWHQVSAVLLNSYIMYLERKNFAASSISRSVASIRAF 80

Query: 144 FKWAVRQEYVAINPCLSVERPK--RKTEGIRPWTKED--MQQFKSFWSEGSQPRLAFEFL 199
           F++  ++E    NP   ++ PK  +K  GI    + D  + Q K   ++G + R   E L
Sbjct: 81  FQYLCQRECWRENPAEGLKAPKIEKKAPGILTVDEVDLLLSQPKENTAKGVRDRAMLELL 140

Query: 200 LYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTII--------TVELPDGFMKLLAMTP 249
             +G+R S+     ++  +L+    +    +   +I         VE    + ++  +  
Sbjct: 141 YATGIRVSELIHLTLRDVNLKLGYLTCSQSERERVIPFGATAKTAVEAYMAWARVELLGE 200

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHEL 307
              E  F+N   + M+   F    K  A  AG+ +  + H +R   A      GA    +
Sbjct: 201 NSSEWLFVNCSGKSMSRQGFWKILKGYAVSAGIQQDITPHTLRHSFAAHLVQNGADLKSV 260

Query: 308 MATYGWKTVDQAETYTK-GADRIR 330
               G   +   + Y     ++IR
Sbjct: 261 QEMMGHSDISTTQIYMNMNVNKIR 284


>gi|255690817|ref|ZP_05414492.1| tyrosine type site-specific recombinase [Bacteroides finegoldii DSM
           17565]
 gi|260623621|gb|EEX46492.1| tyrosine type site-specific recombinase [Bacteroides finegoldii DSM
           17565]
          Length = 385

 Score = 39.7 bits (91), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 63/281 (22%), Positives = 117/281 (41%), Gaps = 25/281 (8%)

Query: 59  EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK--SGDFDYRKITT 116
           +YI   R+ P+  +     YR + +     +  R        +I +K  +G  D+ + T 
Sbjct: 92  DYIEGIRRSPSYSQSTYHNYRSTVNIIKAYLQYRRRPRYLMSKIDKKFIAGLLDFMQNTY 151

Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRV-LFKWAVRQEYVAINPCLSVERPKR--KTEGIRP 173
           ++ +S  ++ K      +    ++ V +   AV +  +  NP  ++ + +R  K +  R 
Sbjct: 152 RNTKSP-DNPKEMSQCTLHLHQAILVRMLNAAVNEGIMNSNPFYALGKHERIAKQQAERD 210

Query: 174 W-TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKT-Q 227
           + TK+++       +     R AF F  ++GLR SD C    + ++      + SI+  +
Sbjct: 211 YLTKDELLALAEAPTTNETTRRAFLFCCFTGLRYSDVCTLAWRDIKQVDSGLVVSIRAMR 270

Query: 228 KTGTIITVELPDGFMKLL----AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV- 282
           KTG  +T+ L    +K L       P G+  F    D   ++A    +  K  A  AG+ 
Sbjct: 271 KTGKQVTIPLNQSALKWLPDRNGCKP-GQRVF----DMTSLSACDRCL--KKSAVAAGIE 323

Query: 283 -NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
            N S H  R   AT+S  AG   + +    G   +   + Y
Sbjct: 324 KNVSYHTSRHTFATLSLAAGGDLYTVGKLLGHTNILSTQVY 364


>gi|37524549|ref|NP_927893.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|37525103|ref|NP_928447.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|37525111|ref|NP_928455.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|36783973|emb|CAE12838.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
 gi|36784529|emb|CAE13429.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
 gi|36784537|emb|CAE13437.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 376

 Score = 39.7 bits (91), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 49/215 (22%), Positives = 86/215 (40%), Gaps = 34/215 (15%)

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-PWTKEDMQQFKSFWS----EGSQ 191
           L  ++V FKW  +Q  +  NP   +E P+ +    R   + ++++   S       +G++
Sbjct: 109 LQPLQVWFKWLTKQNLILANPAADIELPREEKRLPRYILSIDEIEHILSLPDPNTLQGAR 168

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVE------LPDGFMKL 244
            R   E L  +G+R S++ R        +I+SI  ++KT TI   +      LP G   L
Sbjct: 169 DRALMELLWSTGIRRSEAARL-------DIYSIDGSRKTVTIRQGKGNKDRVLPLGERAL 221

Query: 245 -------------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289
                        L +TP  +  F   +    +     +         AG+ K  + H  
Sbjct: 222 NWLQFYQQQIRPQLLVTPDIQSLFVAMDGLDGLQPNGITNAVSGYIRAAGIEKKGACHLF 281

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           R   AT   + GA    + A  G  +V+  + YT+
Sbjct: 282 RHAMATQMLENGADLRWIQAMLGHASVESTQVYTQ 316


>gi|300870084|ref|YP_003784955.1| tyrosine recombinase XerD [Brachyspira pilosicoli 95/1000]
 gi|300687783|gb|ADK30454.1| tyrosine recombinase, XerD [Brachyspira pilosicoli 95/1000]
          Length = 288

 Score = 39.7 bits (91), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 48/200 (24%), Positives = 83/200 (41%), Gaps = 21/200 (10%)

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLAFEF 198
           L+K+ V + Y++ NP  ++E  + K       T E++    S  +E    G + +  FE 
Sbjct: 66  LYKFLVMENYISKNPTDNLEVIRLKRVLPESLTTEEVDDLLSVHNEKTDKGLRDKAIFEL 125

Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDGFMKLL--------AMTP 249
           +  SGLR S+ C   ++ +  +   +K    G     V + D  + +L         +  
Sbjct: 126 MYSSGLRVSEICSLKIEDIFFDEKYLKICGKGKRERIVPINDKALDILKRYIQTSRVVMV 185

Query: 250 IGKET--FFINNDKQKMNATQFSIW--FKAKATKAGVNKSA--HGVRKFSATISADAGAT 303
            GK+T   F+N    K+  ++  IW   K    K+G+ K+   H +R   AT     GA 
Sbjct: 186 KGKKTSELFLNFRGDKI--SRVGIWKIVKEAMKKSGIEKNVYPHTLRHSFATHLIQHGAD 243

Query: 304 AHELMATYGWKTVDQAETYT 323
              +    G   +   E YT
Sbjct: 244 LRSVQRMLGHSDITTTEIYT 263


>gi|300919957|ref|ZP_07136417.1| phage integrase, SAM-like domain protein [Escherichia coli MS
           115-1]
 gi|300413014|gb|EFJ96324.1| phage integrase, SAM-like domain protein [Escherichia coli MS
           115-1]
          Length = 356

 Score = 39.7 bits (91), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 48/215 (22%), Positives = 83/215 (38%), Gaps = 11/215 (5%)

Query: 25  FRKGHGRRIRLPYPHESTFIPAYMSALTGST--PKREYINSPRKKPTTLKWLISEYRKSA 82
           F  G  RRI +     +  I A +   +G    P    INS      TL   +  Y K  
Sbjct: 35  FGLGRDRRIAI-----TEAIQANIELFSGHKHKPLTARINS--DNSVTLHSWLDRYEKIL 87

Query: 83  HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSM 140
               +   + I++ S    I R   D     ITTK I + +     +   +SA    +++
Sbjct: 88  ASRGIKQKTLINYMSKIKAIRRGLPDAPLENITTKEIAAMLNGYIDEGKAASAKLIRSTL 147

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200
              F+ A+ + ++  NP  +    K +    R    E ++ +++  S     RLA E  +
Sbjct: 148 SDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEYLKIYQAAESSPCWLRLAMELAV 207

Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
            +G R  D C      + +    ++  KTG  I +
Sbjct: 208 VTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAI 242


>gi|325983273|ref|YP_004295675.1| tyrosine recombinase XerD [Nitrosomonas sp. AL212]
 gi|325532792|gb|ADZ27513.1| tyrosine recombinase XerD [Nitrosomonas sp. AL212]
          Length = 303

 Score = 39.7 bits (91), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 47/209 (22%), Positives = 83/209 (39%), Gaps = 21/209 (10%)

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---- 192
           L+S++  +++ +RQ  +AI+P L++E PK +       ++++++   S   + +QP    
Sbjct: 82  LSSLKRFYRFLLRQGKIAIDPSLNIETPKLQRHLPESLSEKEVELLLSA-PDLAQPLGLR 140

Query: 193 -RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL------- 244
            R   E L  SGLR S+        +  ++  ++    G    +  P G   L       
Sbjct: 141 DRAMLEALYASGLRVSELINLKYSQVSMDMGVLRVMGKGRKERLA-PVGEESLQWLNRYT 199

Query: 245 -----LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS 297
                L +  I  +T F+      M    F    K  A   G+ K  S H +R   AT  
Sbjct: 200 KEARPLLLNGIVTDTIFVTTRGAAMTRQAFWYLIKRYAQLVGIAKQLSPHTLRHAFATHL 259

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGA 326
            + GA    +    G   +   + YT  A
Sbjct: 260 LNHGADLRVVQLLLGHADISTTQIYTHIA 288


>gi|320637940|gb|EFX07713.1| Phage integrase family protein [Escherichia coli O157:H7 str.
           G5101]
          Length = 356

 Score = 39.7 bits (91), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 48/215 (22%), Positives = 83/215 (38%), Gaps = 11/215 (5%)

Query: 25  FRKGHGRRIRLPYPHESTFIPAYMSALTGST--PKREYINSPRKKPTTLKWLISEYRKSA 82
           F  G  RRI +     +  I A +   +G    P    INS      TL   +  Y K  
Sbjct: 35  FGLGRDRRIAI-----TEAIQANIELFSGHKHKPLTARINS--DNSVTLHSWLDRYEKIL 87

Query: 83  HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSM 140
               +   + I++ S    I R   D     ITTK I + +     +   +SA    +++
Sbjct: 88  ASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAMLNGYIDEGKAASAKLIRSTL 147

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200
              F+ A+ + ++  NP  +    K +    R    E ++ +++  S     RLA E  +
Sbjct: 148 SDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEYLKIYQAAESSPCWLRLAMELAV 207

Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
            +G R  D C      + +    ++  KTG  I +
Sbjct: 208 VTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAI 242


>gi|34541361|ref|NP_905840.1| integrase/recombinase XerD [Porphyromonas gingivalis W83]
 gi|34397678|gb|AAQ66739.1| integrase/recombinase XerD [Porphyromonas gingivalis W83]
          Length = 308

 Score = 39.7 bits (91), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 50/210 (23%), Positives = 88/210 (41%), Gaps = 19/210 (9%)

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SE 188
           S  + ++ ++  F++ V +EY+  +P   +E P+         T E++ +        ++
Sbjct: 70  SIARIISGVKSFFRFLVLEEYIEADPTELLEGPRIGVHLPTVLTIEEVDRLIGSIDPAAQ 129

Query: 189 GSQPRLAFEFLLYS-GLRCSDSCRAGVQHLQNNIFSIKTQKTG----------TIITVEL 237
           G+Q   A   +LYS GLR S+       +L  N   ++    G          T IT EL
Sbjct: 130 GAQRNRAILEILYSCGLRVSELTSLKFSNLFLNESFLRIDGKGRKQRLVPMSETAIT-EL 188

Query: 238 PDGFMKLLAMTPI-GKETF-FINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFS 293
                     TP+ G+E + F++N  + ++     +  K  A +AG+ KS   H  R   
Sbjct: 189 KRYLSDPERPTPVLGQEEYVFLSNRGKAISRIMVFVMIKKLAEEAGITKSISPHTFRHSF 248

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYT 323
           AT   + GA    +    G + +   E YT
Sbjct: 249 ATHLLEGGANLQAIQLMLGHENIATTEIYT 278


>gi|229546531|ref|ZP_04435256.1| integrase/recombinase [Enterococcus faecalis TX1322]
 gi|307277324|ref|ZP_07558423.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX2134]
 gi|307296545|ref|ZP_07576367.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0411]
 gi|229308343|gb|EEN74330.1| integrase/recombinase [Enterococcus faecalis TX1322]
 gi|306496018|gb|EFM65604.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0411]
 gi|306505991|gb|EFM75162.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX2134]
 gi|315157760|gb|EFU01777.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0312]
          Length = 302

 Score = 39.7 bits (91), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 31/135 (22%), Positives = 60/135 (44%), Gaps = 9/135 (6%)

Query: 105 KSGDFDYRKITTKHIRSGV--ESRKHTPSSAIQFLTS-MRVLFKWAVRQEYVAINPCLSV 161
           KS + +  +I  K I+S +     K   +S I    S ++ LF + + ++Y+  NP + +
Sbjct: 59  KSINVEPSQIEKKQIKSWIIDMQEKEMQASTINVSVSRLKKLFDYMLIEKYIDYNPFVDI 118

Query: 162 ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA------FEFLLYSGLRCSDSCRAGVQ 215
           ER K + + I P    +++Q  +   +     +A         ++  GLR S+ C    +
Sbjct: 119 ERLKEQRKVIYPLNDYEIKQMLTVAKKHPYKHIAQRNVVILMLMIECGLRISEVCEIRDE 178

Query: 216 HLQNNIFSIKTQKTG 230
            + NN   I+  K  
Sbjct: 179 DIMNNQIIIRKSKNN 193


>gi|37527448|ref|NP_930792.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|37527457|ref|NP_930801.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|36786883|emb|CAE15952.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
 gi|36786892|emb|CAE15961.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 376

 Score = 39.7 bits (91), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 45/208 (21%), Positives = 76/208 (36%), Gaps = 20/208 (9%)

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-----PWTKEDMQQFKSFWSEGSQ 191
           L  ++V FKW  +Q  +  NP   +E P+ +    R       T++ + Q      +G +
Sbjct: 109 LEPLKVWFKWLTKQNLILANPAADIELPRLEKHLPRYILTIDETEQILAQPDLTTLQGVR 168

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL------- 244
            R   E L  +G+R  +  R  V  +     ++  ++        LP G   L       
Sbjct: 169 DRALMELLWSTGMRRGELTRLDVYSVDGKRKTVTIRQGKGNKDRVLPLGERALSWLQRYQ 228

Query: 245 ------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATI 296
                 L + P  K  F   +    + A   S    A     G+ K  + H  R   AT 
Sbjct: 229 QQVRPQLIVNPDVKALFVAMDGLDGLQANGISNLVTAYINAVGIEKKGACHLFRHAMATQ 288

Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324
             + GA    + A  G  +V+  + YT+
Sbjct: 289 MLENGADLRWIQAMLGHASVESTQVYTQ 316


>gi|331086445|ref|ZP_08335525.1| hypothetical protein HMPREF0987_01828 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330406211|gb|EGG85734.1| hypothetical protein HMPREF0987_01828 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 353

 Score = 39.7 bits (91), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 1/82 (1%)

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER-PKRKTEGIRPWTKEDMQQFKSFW 186
           + P+        +  LF +AVR   +  NPC       K K + +  WTK++ +QF    
Sbjct: 116 YAPTYLKSINNQLAALFNYAVRYYDLKDNPCRKAGSIGKSKADDMEFWTKQEFKQFLPSM 175

Query: 187 SEGSQPRLAFEFLLYSGLRCSD 208
            +  + R+AF  L ++G+R  +
Sbjct: 176 DKKPEARMAFMLLYWTGMRIGE 197


>gi|323139749|ref|ZP_08074786.1| integrase family protein [Methylocystis sp. ATCC 49242]
 gi|322394986|gb|EFX97550.1| integrase family protein [Methylocystis sp. ATCC 49242]
          Length = 331

 Score = 39.7 bits (91), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 33/123 (26%), Positives = 56/123 (45%), Gaps = 10/123 (8%)

Query: 118 HIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR-----KTEG 170
           HI + VE+  R H+  +A Q L ++R+LF W V  + +  NP  SV  PK      KT  
Sbjct: 83  HIGAYVEALTRSHSAPTAKQRLAAIRMLFDWLVTGQIIPTNPAASVRGPKHVVKVGKTPV 142

Query: 171 IRP-WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQ 227
           + P  T+  +       + G + R     ++YS  R   +    V+  ++QN    ++  
Sbjct: 143 LDPEETRILLDSIDVTTTVGLRDRALIALMVYSFARVGAALAMKVEDVYVQNRRLWVRLH 202

Query: 228 KTG 230
           + G
Sbjct: 203 EKG 205


>gi|282880564|ref|ZP_06289271.1| phage integrase domain protein [Prevotella timonensis CRIS 5C-B1]
 gi|281305667|gb|EFA97720.1| phage integrase domain protein [Prevotella timonensis CRIS 5C-B1]
          Length = 316

 Score = 39.7 bits (91), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 43/210 (20%), Positives = 85/210 (40%), Gaps = 17/210 (8%)

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-- 187
           P+S  + L+ +R  +++ V    +  +P   +E P+         + E++   ++     
Sbjct: 73  PTSQARILSGVRSFYRFLVLDGRIEQDPTELLESPRLGEHLPEVLSTEEVDMIENSIDLS 132

Query: 188 --EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---IITV------E 236
             EG + +   E L   GLR S+     + +L      ++    G+   ++ +      E
Sbjct: 133 KPEGQRNKAIIEVLFSCGLRVSELVNLKLSNLYLEEGFVRVMGKGSKERLVPISSKAIRE 192

Query: 237 LPDGFM--KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292
           L   F+   L+ +    ++  F+N   + +  T   I  K +A  AG+ K  S H +R  
Sbjct: 193 LQYWFVDRNLMKIQQGEEDYVFLNRRGKHLTRTMILIMLKRQAVAAGITKTISPHTLRHS 252

Query: 293 SATISADAGATAHELMATYGWKTVDQAETY 322
            AT     GA    + A  G +++   E Y
Sbjct: 253 FATELLKGGADLRAIQAMLGHESIGTTELY 282


>gi|261879004|ref|ZP_06005431.1| integrase/recombinase XerD [Prevotella bergensis DSM 17361]
 gi|270334388|gb|EFA45174.1| integrase/recombinase XerD [Prevotella bergensis DSM 17361]
          Length = 306

 Score = 39.7 bits (91), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 45/209 (21%), Positives = 77/209 (36%), Gaps = 17/209 (8%)

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----S 187
           S  + L+ +R  +++ V   Y+ ++P   +E P          T +++   +       +
Sbjct: 73  SQARILSGVRAFYRFLVLDGYLEVDPTELLESPHLPKHLPEYLTTDEVDMLQDSIDLSTN 132

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII-TVELPDGFMKLLA 246
           EG + R   E L   GLR S+     +  L      I+    G     V + D  ++ L 
Sbjct: 133 EGHRNRAIIEVLFSCGLRVSELTNLKLSDLFLEEQFIRVMGKGNKERLVPISDRAIEELG 192

Query: 247 ----------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSA 294
                     + P  ++  F+N     +  T   I  K +A  AG+ K  S H +R   A
Sbjct: 193 YWFDDRRQMIIKPGEEDYVFLNRRGHHLTRTMILIMIKRQAEAAGIKKTISPHTLRHSFA 252

Query: 295 TISADAGATAHELMATYGWKTVDQAETYT 323
           T     GA    +    G   +   E YT
Sbjct: 253 TALLRGGADLRVIQDLLGHSNIGTTEMYT 281


>gi|158341559|ref|YP_001522723.1| phage integrase [Acaryochloris marina MBIC11017]
 gi|158311800|gb|ABW33409.1| phage integrase [Acaryochloris marina MBIC11017]
          Length = 337

 Score = 39.7 bits (91), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 44/211 (20%), Positives = 89/211 (42%), Gaps = 17/211 (8%)

Query: 40  ESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL-ISEYRKSAHWGSLAVNSRISFESY 98
           E   I     A+T     R   + P+  P  L W+ + E+ +S     ++ N+R ++E  
Sbjct: 5   EVKLIVLADQAITPIDTARSRTHPPQTTPADLLWMRVGEFMRSR---EISSNTRKAYERD 61

Query: 99  FDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF---------LTSMRVLFKWAVR 149
             Q +  + D  + +IT + +       K  P+   Q          L +++  FKW   
Sbjct: 62  LKQFMDWT-DKGWHEITARDLDRYKNHLKTEPNQRGQLRRNATINRNLAALQSFFKWLTV 120

Query: 150 QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-FKSFWSEGSQP--RLAFEFLLYSGLRC 206
           ++Y+  +P L +E+ K      + ++++++ + +++    G       A   L+  GLR 
Sbjct: 121 RDYIPKDPTLLLEKLKADPVLPQEFSQDEVDKLYQAICDRGFHAFRDRALLHLIDHGLRA 180

Query: 207 SDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237
           S+  R  V        +I+  K  ++ TV L
Sbjct: 181 SEIHRLNVGDYDGQRITIRVAKADSVGTVPL 211


>gi|90962617|ref|YP_536533.1| Phage integrase [Lactobacillus salivarius UCC118]
 gi|90821811|gb|ABE00450.1| Phage integrase [Lactobacillus salivarius UCC118]
          Length = 381

 Score = 39.7 bits (91), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 63/288 (21%), Positives = 116/288 (40%), Gaps = 53/288 (18%)

Query: 72  KWLI--SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV-ESRKH 128
           +WL    E  K++ W  + + +      YF        D    KIT +H +  V ++ K 
Sbjct: 76  EWLALHKETVKASTWQFIELRANNHVRPYFK-------DMYVDKITLRHCQDFVNKTFKK 128

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT----EGIRPWTKEDMQQFKS 184
            P + +  L+ ++    +A+R   +  NP L V +PK++     +    + K+++++F  
Sbjct: 129 APVAYVYSLSIVKNTLDYALRLGMIESNPMLYVIKPKKQASISDKHDNYYNKDELKKFLD 188

Query: 185 FWSEGSQPRLA-FEFLLYSGLRCSDSCRAGVQH---LQNNIFSI---------------- 224
              + S  +   F  L YSG+R  + C A   H    +NN  +I                
Sbjct: 189 VAKDTSLKKYTLFRLLAYSGMRIGE-CLALTWHDLDYKNNTIAINKTLARTNNGIKIQTP 247

Query: 225 KTQKTGTIITVELPDGFMKLLAM---------TPIG------KETFFINNDKQKMNATQF 269
           KT+ +  +I+  L +  +++L M           +G      K+  F N     +     
Sbjct: 248 KTKASNRVIS--LDNETIQVLKMWQLEQRKQLLKVGINAMDSKQLIFSNGKNSFIIVPTV 305

Query: 270 SIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTV 316
            +  K  A KAG++  + HG R   AT+   +G    ++ A  G   V
Sbjct: 306 RLAIKQIAKKAGIHSITTHGFRHTHATLLFASGLDIKQVQARLGHSNV 353


>gi|301029172|ref|ZP_07192295.1| phage integrase, SAM-like domain protein [Escherichia coli MS
           196-1]
 gi|299877900|gb|EFI86111.1| phage integrase, SAM-like domain protein [Escherichia coli MS
           196-1]
          Length = 326

 Score = 39.7 bits (91), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 48/215 (22%), Positives = 83/215 (38%), Gaps = 11/215 (5%)

Query: 25  FRKGHGRRIRLPYPHESTFIPAYMSALTGST--PKREYINSPRKKPTTLKWLISEYRKSA 82
           F  G  RRI +     +  I A +   +G    P    INS      TL   +  Y K  
Sbjct: 5   FGLGRDRRIAI-----TEAIQANIELFSGHKHKPLTARINSD--NSVTLHSWLDRYEKIL 57

Query: 83  HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSM 140
               +   + I++ S    I R   D     ITTK I + +     +   +SA    +++
Sbjct: 58  ASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAMLNGYIDEGKAASAKLIRSTL 117

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200
              F+ A+ + ++  NP  +    K +    R    E ++ +++  S     RLA E  +
Sbjct: 118 SDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEYLKIYQAAESSPCWLRLAMELAV 177

Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
            +G R  D C      + +    ++  KTG  I +
Sbjct: 178 VTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAI 212


>gi|254166742|ref|ZP_04873596.1| site-specific recombinase, phage integrase family protein
           [Aciduliprofundum boonei T469]
 gi|197624352|gb|EDY36913.1| site-specific recombinase, phage integrase family protein
           [Aciduliprofundum boonei T469]
          Length = 279

 Score = 39.7 bits (91), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 44/210 (20%), Positives = 82/210 (39%), Gaps = 14/210 (6%)

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           RK++ +S      ++R  FK      Y  ++   ++  PKR  +  +  +++++++    
Sbjct: 62  RKYSKNSLYLATKAIRSYFK------YKNLDTAKNLSSPKRPRQMPKYLSEDEVKRLIEA 115

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN--IFSIKTQKTG----TIITVELPD 239
            SE  +       L YSGLR S+ C   ++ +  N  I  + + K       +++  + +
Sbjct: 116 SSENPRDYAIISLLAYSGLRVSELCNLKIEDVDFNERIVYVHSGKGDKDRIVVVSPRVIE 175

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATIS 297
                L       E  F +    K++  Q     K  A KAG+ K    H +R   AT  
Sbjct: 176 ALQNYLYTREDDMEYLFASQKSNKISRVQVFRIVKKYAEKAGIKKEVTPHVLRHTLATTL 235

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGAD 327
              G     +    G  +V   + YT   D
Sbjct: 236 LRRGVDIRFIQQFLGHSSVATTQIYTHVDD 265


>gi|218897574|ref|YP_002445985.1| DNA integration/recombination/invertion protein [Bacillus cereus
           G9842]
 gi|218543461|gb|ACK95855.1| DNA integration/recombination/invertion protein [Bacillus cereus
           G9842]
          Length = 369

 Score = 39.7 bits (91), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 26/118 (22%), Positives = 58/118 (49%), Gaps = 5/118 (4%)

Query: 95  FESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL---FKWAVRQ 150
           + ++ +Q +I   G     K+   HI+   ++  +   +    L   R+L      AV+Q
Sbjct: 88  YRAFINQHVIPSIGMVALHKLNVMHIQKCYKTAINKGITNNSILLMHRILKSALNLAVKQ 147

Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD 208
             ++ NP    E PK++   I+ WT+E++++F +  S+ S+  + +   + +G+R  +
Sbjct: 148 NIISRNPADFAEIPKKEKTSIQTWTEEEVKKFLAH-SQESRYHIGYLLAITTGMRLGE 204


>gi|126173817|ref|YP_001049966.1| phage integrase family protein [Shewanella baltica OS155]
 gi|125997022|gb|ABN61097.1| phage integrase family protein [Shewanella baltica OS155]
          Length = 451

 Score = 39.7 bits (91), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 41/198 (20%), Positives = 79/198 (39%), Gaps = 9/198 (4%)

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-----GSQ 191
           L +++ +FK A+RQ +   NPC+ + + KR+    R  +  +MQ+      E     GS 
Sbjct: 163 LDTLQSVFKLALRQGHCLTNPCIGIRQNKRRVLN-RFLSVAEMQRLSVALDECEEVGGSI 221

Query: 192 PRLA--FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP 249
            + A     LL +G R S+      ++++ N   +   KTG  + + +    + +L+   
Sbjct: 222 AQCADILRLLLLTGCRLSEITFLKGEYVRGNELHLPDSKTGAKV-LYIGQAAVDILSRYH 280

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMA 309
               T           +   S+W + +      +   H +R   A+ +   G +   + +
Sbjct: 281 CKANTELFPMKLGASTSLVQSLWLRLRKQIGIEDVRLHDLRHTFASYAVMDGCSIPMVAS 340

Query: 310 TYGWKTVDQAETYTKGAD 327
             G K V     YT   D
Sbjct: 341 LLGHKKVTMTLRYTHVGD 358


>gi|320201208|gb|EFW75790.1| Phage integrase [Escherichia coli EC4100B]
          Length = 356

 Score = 39.7 bits (91), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 48/215 (22%), Positives = 83/215 (38%), Gaps = 11/215 (5%)

Query: 25  FRKGHGRRIRLPYPHESTFIPAYMSALTGST--PKREYINSPRKKPTTLKWLISEYRKSA 82
           F  G  RRI +     +  I A +   +G    P    INS      TL   +  Y K  
Sbjct: 35  FGLGRDRRIAI-----TEAIQANIELFSGHKHKPLTARINS--DNSVTLHSWLDRYEKIL 87

Query: 83  HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSM 140
               +   + I++ S    I R   D     ITTK I + +     +   +SA    +++
Sbjct: 88  ASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAMLNGYIDEGKAASAKLIRSTL 147

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200
              F+ A+ + ++  NP  +    K +    R    E ++ +++  S     RLA E  +
Sbjct: 148 SDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEYLKIYQAAESSPCWLRLAMELAV 207

Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
            +G R  D C      + +    ++  KTG  I +
Sbjct: 208 VTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAI 242


>gi|149194209|ref|ZP_01871307.1| Phage integrase [Caminibacter mediatlanticus TB-2]
 gi|149136162|gb|EDM24640.1| Phage integrase [Caminibacter mediatlanticus TB-2]
          Length = 268

 Score = 39.7 bits (91), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 34/163 (20%), Positives = 70/163 (42%), Gaps = 7/163 (4%)

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
           +P + E++++  +         LA   +   GLR S++    +  +  +   IK +   T
Sbjct: 100 KPISLENIKE--ALKVANMDEYLAIIVIFSLGLRISEALNIKLSDIHGDWIEIKGKGNKT 157

Query: 232 IITV---ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHG 288
            I     +L +   K L + P  K+ +    D +K +  Q     +    K G++ + H 
Sbjct: 158 RILPLHPKLKEFIQKYLKINP--KKEYLFEKDGKKYSENQLRYNIQKAFKKIGIHATPHQ 215

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           +R   AT   D GA  +++    G + +   + YTK ++ ++L
Sbjct: 216 LRHSFATYMLDKGARINDVSELLGHEFISTTQIYTKLSNSLKL 258


>gi|9634144|ref|NP_037686.1| integrase [Enterobacteria phage HK022]
 gi|138560|sp|P16407|VINT_BPHK0 RecName: Full=Integrase
 gi|6863136|gb|AAF30377.1|AF069308_25 integrase [Enterobacteria phage HK022]
 gi|15760|emb|CAA36221.1| unnamed protein product [Enterobacteria phage HK022]
 gi|16209083|gb|AAL09856.1| integrase [CRIM helper plasmid pAH69]
 gi|16209095|gb|AAL09864.1| integrase [CRIM helper plasmid pAH83]
          Length = 357

 Score = 39.7 bits (91), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 33/147 (22%), Positives = 63/147 (42%), Gaps = 2/147 (1%)

Query: 93  ISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQ 150
           + + S    I RK  D     I+TK + + + +   +   +SA    +++  +F+ A+ +
Sbjct: 98  LDYASKIRAIRRKLPDKPLADISTKEVAAMLNTYVAEGKSASAKLIRSTLVDVFREAIAE 157

Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210
            +VA NP  +    K +    R    E +  + +        RLA +  + +G R  D C
Sbjct: 158 GHVATNPVTATRTAKSEVRRSRLTANEYVAIYHAAEPLPIWLRLAMDLAVVTGQRVGDLC 217

Query: 211 RAGVQHLQNNIFSIKTQKTGTIITVEL 237
           R     + +N   I+  KTG  + + L
Sbjct: 218 RMKWSDINDNHLHIEQSKTGAKLAIPL 244


>gi|9634162|ref|NP_037720.1| integrase [Enterobacteria phage HK97]
 gi|218694191|ref|YP_002401858.1| Integrase from phage [Escherichia coli 55989]
 gi|309797063|ref|ZP_07691462.1| phage integrase, SAM-like domain protein [Escherichia coli MS
           145-7]
 gi|331676448|ref|ZP_08377145.1| integrase [Escherichia coli H591]
 gi|6901591|gb|AAF31094.1|AF069529_7 integrase [Enterobacteria phage HK97]
 gi|218350923|emb|CAU96623.1| Integrase from phage [Escherichia coli 55989]
 gi|308119346|gb|EFO56608.1| phage integrase, SAM-like domain protein [Escherichia coli MS
           145-7]
 gi|331075941|gb|EGI47238.1| integrase [Escherichia coli H591]
          Length = 356

 Score = 39.7 bits (91), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 48/215 (22%), Positives = 83/215 (38%), Gaps = 11/215 (5%)

Query: 25  FRKGHGRRIRLPYPHESTFIPAYMSALTGST--PKREYINSPRKKPTTLKWLISEYRKSA 82
           F  G  RRI +     +  I A +   +G    P    INS      TL   +  Y K  
Sbjct: 35  FGLGRDRRIAI-----TEAIQANIELFSGHKHKPLTARINS--DNSVTLHSWLDRYEKIL 87

Query: 83  HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSM 140
               +   + I++ S    I R   D     ITTK I + +     +   +SA    +++
Sbjct: 88  ASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAMLNGYIDEGKAASAKLIRSTL 147

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200
              F+ A+ + ++  NP  +    K +    R    E ++ +++  S     RLA E  +
Sbjct: 148 SDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEYLKIYQAAESSPCWLRLAMELAV 207

Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
            +G R  D C      + +    ++  KTG  I +
Sbjct: 208 VTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAI 242


>gi|329957482|ref|ZP_08297957.1| site-specific recombinase, phage integrase family [Bacteroides
           clarus YIT 12056]
 gi|328522359|gb|EGF49468.1| site-specific recombinase, phage integrase family [Bacteroides
           clarus YIT 12056]
          Length = 393

 Score = 39.7 bits (91), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 71/323 (21%), Positives = 118/323 (36%), Gaps = 59/323 (18%)

Query: 30  GRRIRLPY--------PHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKS 81
           G+RI L           + S+FI  +   +T S+ K    NS ++   +   L+ E++K 
Sbjct: 86  GKRISLELLKNMLTTQENNSSFISFFKQEVTNSSLK----NSTKRNHLSTLMLLQEFKKD 141

Query: 82  AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMR 141
             +  L      SFE YF Q+               H  +  +  KH             
Sbjct: 142 ITFSDLTFEFVSSFE-YFLQL------------KGYHTNTIAKHMKHLKRHV-------- 180

Query: 142 VLFKWAVRQEYVAINPC----LSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL--- 194
                A+ +EY+ I         ++  + K   + P   E++++ +     G   +L   
Sbjct: 181 ---NIAINKEYIEIQKYAFRKYKIKTVENKHTHLVP---EELEKLEKLNLSGRYMKLQKS 234

Query: 195 --AFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDGF----MKL 244
             AF F  Y+G+R SD      +++    Q      K+ KTGT + + L   F    + +
Sbjct: 235 LDAFLFCCYAGMRYSDFTNLSSENIVDINQETWLIYKSVKTGTEVRLPLYLLFAGKGIII 294

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATA 304
           L       E FF   D   +N    ++   AK      N S H  R  +AT+    G   
Sbjct: 295 LNKYRDNLEGFFRLRDNSNVNKDLLTL---AKLAGLSKNISFHTARHTNATLLIYNGVNI 351

Query: 305 HELMATYGWKTVDQAETYTKGAD 327
             +    G K+V   + YT   D
Sbjct: 352 TTVQKLLGHKSVKTTQVYTNIMD 374


>gi|315641316|ref|ZP_07896392.1| tyrosine recombinase XerC [Enterococcus italicus DSM 15952]
 gi|315482889|gb|EFU73409.1| tyrosine recombinase XerC [Enterococcus italicus DSM 15952]
          Length = 185

 Score = 39.7 bits (91), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 43/79 (54%), Gaps = 13/79 (16%)

Query: 143 LFKWAVRQEYVAINPCLSVERPKR-----KTEGIRPWTKEDMQQFKSFWSEGSQP----- 192
           +FK+A+    +  NP   V  PKR     +TE I+ +TK+++++   +  + ++P     
Sbjct: 9   VFKYAINLGIIDRNPLEYVLMPKRIKEAPRTEKIKVYTKQELKELFHYL-DNTKPSYNND 67

Query: 193 --RLAFEFLLYSGLRCSDS 209
              + F FL+YSG R S++
Sbjct: 68  FNNILFRFLIYSGCRISEA 86


>gi|300926171|ref|ZP_07141983.1| phage integrase, SAM-like domain protein [Escherichia coli MS
           182-1]
 gi|300417806|gb|EFK01117.1| phage integrase, SAM-like domain protein [Escherichia coli MS
           182-1]
          Length = 356

 Score = 39.7 bits (91), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 48/215 (22%), Positives = 83/215 (38%), Gaps = 11/215 (5%)

Query: 25  FRKGHGRRIRLPYPHESTFIPAYMSALTGST--PKREYINSPRKKPTTLKWLISEYRKSA 82
           F  G  RRI +     +  I A +   +G    P    INS      TL   +  Y K  
Sbjct: 35  FGLGRDRRIAI-----TEAIQANIELFSGHKHKPLTARINS--DNSVTLHSWLDRYEKIL 87

Query: 83  HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSM 140
               +   + I++ S    I R   D     ITTK I + +     +   +SA    +++
Sbjct: 88  ASRGIKQKTLINYISKIKAIRRGLPDASLEDITTKEIAAMLNGYIDEGKAASAKLIRSTL 147

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200
              F+ A+ + ++  NP  +    K +    R    E ++ +++  S     RLA E  +
Sbjct: 148 SDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEYLKIYQAAESSPCWLRLAMELAV 207

Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
            +G R  D C      + +    ++  KTG  I +
Sbjct: 208 VTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAI 242


>gi|315646363|ref|ZP_07899481.1| integrase family protein [Paenibacillus vortex V453]
 gi|315278006|gb|EFU41326.1| integrase family protein [Paenibacillus vortex V453]
          Length = 294

 Score = 39.7 bits (91), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 34/190 (17%), Positives = 83/190 (43%), Gaps = 17/190 (8%)

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KSFW 186
           SS ++   S+R  F++ VRQ  +  +P   ++RPK + +  +  T E + +      S  
Sbjct: 68  SSQLRCTASLRSFFQYLVRQSVIGQDPTQLLDRPKPERKPPQAVTIEQVDKLLSAPDSDT 127

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
            +G++ R   E L  SG++ S+     +  L   +           +   +P G  ++L 
Sbjct: 128 PQGARDRAMLELLYASGIKVSELVSLSIHDLNMEM---------RFLRCAVPGGKERILP 178

Query: 247 MTPIGKET--FFINNDKQKM--NATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGA 302
           ++ I  ++  +++ + + ++  +A + +++  +  T+         ++K+      D   
Sbjct: 179 ISQIAAQSVAYYMRDMRSQLIRDAEEEALFLNSLGTRLTRQGFWKIIKKYGKLAEIDEEI 238

Query: 303 TAHELMATYG 312
           T H L  ++ 
Sbjct: 239 TPHTLRHSFA 248


>gi|168750266|ref|ZP_02775288.1| phage integrase family [Escherichia coli O157:H7 str. EC4113]
 gi|168757063|ref|ZP_02782070.1| phage integrase family [Escherichia coli O157:H7 str. EC4401]
 gi|168767219|ref|ZP_02792226.1| phage integrase family [Escherichia coli O157:H7 str. EC4486]
 gi|168776481|ref|ZP_02801488.1| phage integrase family [Escherichia coli O157:H7 str. EC4196]
 gi|168779262|ref|ZP_02804269.1| phage integrase family [Escherichia coli O157:H7 str. EC4076]
 gi|168800794|ref|ZP_02825801.1| phage integrase family protein [Escherichia coli O157:H7 str.
           EC508]
 gi|193065593|ref|ZP_03046660.1| phage integrase family [Escherichia coli E22]
 gi|194429706|ref|ZP_03062223.1| phage integrase family protein [Escherichia coli B171]
 gi|195936762|ref|ZP_03082144.1| lambda integrase [Escherichia coli O157:H7 str. EC4024]
 gi|208807102|ref|ZP_03249439.1| phage integrase family protein [Escherichia coli O157:H7 str.
           EC4206]
 gi|208815031|ref|ZP_03256210.1| phage integrase family protein [Escherichia coli O157:H7 str.
           EC4045]
 gi|208822504|ref|ZP_03262823.1| phage integrase family protein [Escherichia coli O157:H7 str.
           EC4042]
 gi|209397327|ref|YP_002269402.1| phage integrase family protein [Escherichia coli O157:H7 str.
           EC4115]
 gi|254160836|ref|YP_003043944.1| integrase [Escherichia coli B str. REL606]
 gi|291281709|ref|YP_003498527.1| Phage integrase family [Escherichia coli O55:H7 str. CB9615]
 gi|307137380|ref|ZP_07496736.1| Phage integrase family protein [Escherichia coli H736]
 gi|331641269|ref|ZP_08342404.1| integrase [Escherichia coli H736]
 gi|331645918|ref|ZP_08347021.1| integrase [Escherichia coli M605]
 gi|187768129|gb|EDU31973.1| phage integrase family [Escherichia coli O157:H7 str. EC4196]
 gi|188015490|gb|EDU53612.1| phage integrase family [Escherichia coli O157:H7 str. EC4113]
 gi|189002936|gb|EDU71922.1| phage integrase family [Escherichia coli O157:H7 str. EC4076]
 gi|189355874|gb|EDU74293.1| phage integrase family [Escherichia coli O157:H7 str. EC4401]
 gi|189363411|gb|EDU81830.1| phage integrase family [Escherichia coli O157:H7 str. EC4486]
 gi|189376950|gb|EDU95366.1| phage integrase family protein [Escherichia coli O157:H7 str.
           EC508]
 gi|192926778|gb|EDV81405.1| phage integrase family [Escherichia coli E22]
 gi|194412265|gb|EDX28570.1| phage integrase family protein [Escherichia coli B171]
 gi|208726903|gb|EDZ76504.1| phage integrase family protein [Escherichia coli O157:H7 str.
           EC4206]
 gi|208731679|gb|EDZ80367.1| phage integrase family protein [Escherichia coli O157:H7 str.
           EC4045]
 gi|208737989|gb|EDZ85672.1| phage integrase family protein [Escherichia coli O157:H7 str.
           EC4042]
 gi|209158727|gb|ACI36160.1| phage integrase family protein [Escherichia coli O157:H7 str.
           EC4115]
 gi|253972737|gb|ACT38408.1| integrase [Escherichia coli B str. REL606]
 gi|290761582|gb|ADD55543.1| Phage integrase family [Escherichia coli O55:H7 str. CB9615]
 gi|309700991|emb|CBJ00289.1| integrase [Escherichia coli ETEC H10407]
 gi|315614643|gb|EFU95285.1| integrase [Escherichia coli 3431]
 gi|320643338|gb|EFX12524.1| Phage integrase family protein [Escherichia coli O157:H- str.
           493-89]
 gi|320648681|gb|EFX17319.1| Phage integrase family protein [Escherichia coli O157:H- str. H
           2687]
 gi|320664810|gb|EFX31948.1| Phage integrase family protein [Escherichia coli O157:H7 str.
           LSU-61]
 gi|323158819|gb|EFZ44832.1| integrase [Escherichia coli E128010]
 gi|323191112|gb|EFZ76377.1| integrase [Escherichia coli RN587/1]
 gi|326345702|gb|EGD69441.1| Phage integrase [Escherichia coli O157:H7 str. 1125]
 gi|327254456|gb|EGE66078.1| integrase [Escherichia coli STEC_7v]
 gi|331038067|gb|EGI10287.1| integrase [Escherichia coli H736]
 gi|331044670|gb|EGI16797.1| integrase [Escherichia coli M605]
          Length = 356

 Score = 39.7 bits (91), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 48/215 (22%), Positives = 83/215 (38%), Gaps = 11/215 (5%)

Query: 25  FRKGHGRRIRLPYPHESTFIPAYMSALTGST--PKREYINSPRKKPTTLKWLISEYRKSA 82
           F  G  RRI +     +  I A +   +G    P    INS      TL   +  Y K  
Sbjct: 35  FGLGRDRRIAI-----TEAIQANIELFSGHKHKPLTARINS--DNSVTLHSWLDRYEKIL 87

Query: 83  HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSM 140
               +   + I++ S    I R   D     ITTK I + +     +   +SA    +++
Sbjct: 88  ASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAMLNGYIDEGKAASAKLIRSTL 147

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200
              F+ A+ + ++  NP  +    K +    R    E ++ +++  S     RLA E  +
Sbjct: 148 SDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEYLKIYQAAESSPCWLRLAMELAV 207

Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
            +G R  D C      + +    ++  KTG  I +
Sbjct: 208 VTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAI 242


>gi|62182418|ref|YP_218835.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|62130051|gb|AAX67754.1| putative integrase/recombinase, site-specific [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|322716911|gb|EFZ08482.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 300

 Score = 39.7 bits (91), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 45/215 (20%), Positives = 86/215 (40%), Gaps = 23/215 (10%)

Query: 93  ISFESYFDQIIRKSGDF---DYRKITTKHIRS-GVESRKHT--PSSAIQFLTSMRVLFKW 146
           ++++   D II  +G+     +++     +RS  V SR+    P+S    L+++R  F W
Sbjct: 29  LNYQRQLDAIIALAGEAGLKSWQQCDAAIVRSFAVRSRRKGLGPASLALRLSALRSFFDW 88

Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP-----RLAFEFLLY 201
            V Q  +  NP   V  PK      +    +D+ +      + + P     R   E +  
Sbjct: 89  LVSQGELKANPAKGVSAPKAPRHLPKNIDVDDVNRLLDI--DLNDPLAVRDRAMLEVMYG 146

Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG---------FMKLLAMTPIGK 252
           +GLR S+     ++HL  +   +     G+     LP G         ++ L  +    +
Sbjct: 147 AGLRLSELVGLDIKHLDLDTGEVWVMGKGS-KERRLPIGRNAVTWIEHWLDLRGLFASDE 205

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAH 287
           E  F++   ++++A      F     K G+N   H
Sbjct: 206 EALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVH 240


>gi|255026410|ref|ZP_05298396.1| hypothetical protein LmonocytFSL_08880 [Listeria monocytogenes FSL
           J2-003]
          Length = 290

 Score = 39.7 bits (91), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 46/216 (21%), Positives = 89/216 (41%), Gaps = 24/216 (11%)

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           +P S  +++ S+R  F + +    ++ +P + +E PK+     +    +D+++  S  S+
Sbjct: 67  SPRSVARYIASLRSFFHYLMHDGKMSHDPMIQIETPKQAKGLPKVLNLDDVEKLLS-SSD 125

Query: 189 GSQP-----RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG------------- 230
            S P     +   E L  +GLR ++     +  L  ++  I+T   G             
Sbjct: 126 TSTPLGLRDQAMMEILYATGLRVTELVSLKMDDLHLHMGFIQTIGKGDKERIIPLGKTAT 185

Query: 231 TIITVELPDGFMKLLAMTPIGKETF-FINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287
           T++   L +   KL    P  +  F F+N+  Q +    F    K  A ++G+ K  + H
Sbjct: 186 TVLEKYLEEARPKL--RRPKYRNDFVFLNHHGQGLTRQGFWKILKGIAKESGIEKPITPH 243

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
            +R   AT   + GA    +    G   +   + YT
Sbjct: 244 TLRHSFATHLLENGADLRSVQELLGHADISTTQIYT 279


>gi|37525317|ref|NP_928661.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|37527576|ref|NP_930920.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|36784744|emb|CAE13652.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
 gi|36787011|emb|CAE16085.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 376

 Score = 39.7 bits (91), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 49/215 (22%), Positives = 86/215 (40%), Gaps = 34/215 (15%)

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-PWTKEDMQQFKSFWS----EGSQ 191
           L  ++V FKW  +Q  +  NP   +E P+ +    R   + ++++   S       +G++
Sbjct: 109 LQPLQVWFKWLTKQNLILANPAADIELPREEKRLPRYILSIDEIEHILSLPDPNTLQGAR 168

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVE------LPDGFMKL 244
            R   E L  +G+R S++ R        +I+SI  ++KT TI   +      LP G   L
Sbjct: 169 DRALMELLWSTGIRRSEAARL-------DIYSIDGSRKTVTIRQGKGNKDRVLPLGERAL 221

Query: 245 -------------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289
                        L +TP  +  F   +    +     +         AG+ K  + H  
Sbjct: 222 NWLQFYQQQVRPQLLVTPDIQSLFVAMDGLDGLQPNGITNAVSGYIRAAGIEKKGACHLF 281

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           R   AT   + GA    + A  G  +V+  + YT+
Sbjct: 282 RHAMATQMLENGADLRWIQAMLGHASVESTQVYTQ 316


>gi|329667457|gb|AEB93405.1| integrase/recombinase XerD [Lactobacillus johnsonii DPC 6026]
          Length = 296

 Score = 39.7 bits (91), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 46/226 (20%), Positives = 96/226 (42%), Gaps = 23/226 (10%)

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KSFW 186
           +S  + ++S+R  ++W +RQ+ +  +P + ++ PK +       ++E++ +      +  
Sbjct: 67  TSISRMISSLRKFYQWLLRQDIIERDPLVKIDSPKSERRLPTALSEEEVTKLLDAPDTNT 126

Query: 187 SEGSQPRLAFEFLLYSGLRCSD--SCRAGVQHLQNNIFSI--KTQKTGTIITVELP---- 238
             G + R   E L  +G+R S+  + R G  H +  I  +  K  K   +   E+     
Sbjct: 127 RLGIRDRAMLEVLYATGMRVSELINLRTGDIHSELKIIRVLGKGSKERLVPVTEVALSWL 186

Query: 239 DGFMKLLAMTPIGK-----ETFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSA--HGV 289
           + + K +    + K     +  F+NN   ++  T+ ++W K K      G+ K+   H +
Sbjct: 187 EKYQKDVRENQVLKSGQFTDVIFLNNHGHQL--TRQAVWQKIKKYCQLIGITKNVTPHTL 244

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335
           R   AT   + GA    +    G   +   + YT    +  L + N
Sbjct: 245 RHTFATHLLENGADLRVVQEILGHSDITTTQIYTNLTQKHILEVYN 290


>gi|289167066|ref|YP_003445333.1| site-specific recombinase, phage integrase family [Streptococcus
           mitis B6]
 gi|288906631|emb|CBJ21465.1| site-specific recombinase, phage integrase family [Streptococcus
           mitis B6]
          Length = 377

 Score = 39.7 bits (91), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 32/140 (22%), Positives = 66/140 (47%), Gaps = 9/140 (6%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT--KHIRSGVESRKHTPSSAI- 134
           +RK+++  +   N     + YF  ++   G   Y  I    +H+R  V      P S   
Sbjct: 78  HRKASYINTQDNNYNKHIKDYF-SMVDNVGKLTYEDIYQFREHLRQKVAKNSDKPLSTNT 136

Query: 135 --QFLTSMRVLFKWAVRQEYVAINPCLSVER-PKRKTEGIRPWTKEDMQQFKSFWS-EGS 190
             + +  ++ +F   +R+ Y + NP   +++ P  KT+ ++ WT ++ Q+F + +  E  
Sbjct: 137 INKIMILLKKIFDVGLRKGYYSSNPAKLIKKLPIEKTK-MQFWTVKEFQKFLTLFEPEEY 195

Query: 191 QPRLAFEFLLYSGLRCSDSC 210
             +L F  L ++GLR  ++ 
Sbjct: 196 NIKLLFTVLFFTGLRLGEAL 215


>gi|29345643|ref|NP_809146.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
 gi|29337535|gb|AAO75340.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
          Length = 373

 Score = 39.7 bits (91), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 89/217 (41%), Gaps = 23/217 (10%)

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-- 181
           ++RK   +SA  + ++ R     A R   +  NP   +ER     E I P  KE + Q  
Sbjct: 153 KNRKLHINSAANYWSTFRASIHTAYRDRKIKENPNGFLER----IETI-PTDKEHLSQDE 207

Query: 182 -FKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQ----NNIFSIKT--QKTGTI 232
             +   +  S P L  AF F   + LR SD  +   + +Q    + +  + T  QKT  I
Sbjct: 208 VIRLASTPCSAPALKRAFLFSCLTALRKSDIKKLTWEEIQPYGSDGVMYVTTRMQKTKDI 267

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290
           +   + +  ++L+  +P  +   F +  K  M       W K     AG+ K  S H  R
Sbjct: 268 VHNPISEEALELIGYSPDKRGKVFPDF-KDSMTQAPLKNWLK----DAGITKHISYHCSR 322

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
              A +  DAG +   +    G K V   E Y K +D
Sbjct: 323 HSFACLQLDAGTSIAVVQRYLGHKNVATTEVYAKISD 359


>gi|302389829|ref|YP_003825650.1| tyrosine recombinase XerD subunit [Thermosediminibacter oceani DSM
           16646]
 gi|302200457|gb|ADL08027.1| tyrosine recombinase XerD subunit [Thermosediminibacter oceani DSM
           16646]
          Length = 299

 Score = 39.7 bits (91), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 48/228 (21%), Positives = 88/228 (38%), Gaps = 53/228 (23%)

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFW 186
           SS  +   +++  + + VR+ Y+  +P ++++ PK + +  R  T E+    ++Q  +  
Sbjct: 72  SSISRACAAIKSFYHFLVRERYIQEDPTVNLDTPKLEKKLPRVLTVEEVERLLEQPDTSN 131

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
             G + +   E L  +G+R S+            + S+      T+  V L  GF++ L 
Sbjct: 132 PLGFRDKTMLEVLYATGIRVSE------------LISL------TVDDVNLDMGFLRCLG 173

Query: 247 ------MTPIGK-----------------------ETFFINNDKQKMNATQFSIWFKAKA 277
                 + PIG                           F+N+  Q +    F    K  A
Sbjct: 174 KGSKERIVPIGSFAVNYLRQYINDVRKKILKGKSTNILFVNHMGQALTRQGFWKIIKKYA 233

Query: 278 TKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
            KAG+NK  + H +R   AT   + GA    +    G   +   + YT
Sbjct: 234 RKAGINKVITPHTLRHSFATHLIENGADLRAVQEMLGHADISTTQVYT 281


>gi|16767219|ref|NP_462834.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|167553868|ref|ZP_02347612.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|167993887|ref|ZP_02574980.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|168233881|ref|ZP_02658939.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|168822681|ref|ZP_02834681.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|194470289|ref|ZP_03076273.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|197251815|ref|YP_002148873.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|224585764|ref|YP_002639563.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|238912952|ref|ZP_04656789.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|2497413|sp|P55888|XERC_SALTY RecName: Full=Tyrosine recombinase xerC
 gi|1916339|gb|AAC45778.1| site-specific recombinase [Salmonella enterica subsp. enterica
           serovar Typhimurium]
 gi|6960253|gb|AAF33443.1| S. typhimurium site-specific recombinase (XERC) (SP:P55888);
           contains similarity to Pfam family PF00589 ('Phage'
           integrase family), score=227.1, E=2.5e-64, N=1
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|16422513|gb|AAL22793.1| putative site-specific integrase/recombinase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|194456653|gb|EDX45492.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|197215518|gb|ACH52915.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|205321790|gb|EDZ09629.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|205328137|gb|EDZ14901.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|205332099|gb|EDZ18863.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|205340961|gb|EDZ27725.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|224470292|gb|ACN48122.1| tyrosine recombinase [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|261249072|emb|CBG26933.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|267996228|gb|ACY91113.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301160464|emb|CBW19994.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|312915067|dbj|BAJ39041.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|320088359|emb|CBY98119.1| Tyrosine recombinase xerC [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
 gi|321225467|gb|EFX50524.1| Tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
 gi|323132296|gb|ADX19726.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
          Length = 300

 Score = 39.7 bits (91), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 45/215 (20%), Positives = 86/215 (40%), Gaps = 23/215 (10%)

Query: 93  ISFESYFDQIIRKSGDF---DYRKITTKHIRS-GVESRKHT--PSSAIQFLTSMRVLFKW 146
           ++++   D II  +G+     +++     +RS  V SR+    P+S    L+++R  F W
Sbjct: 29  LNYQRQLDAIIALAGETGLKSWQQCDAAIVRSFAVRSRRKGLGPASLALRLSALRSFFDW 88

Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP-----RLAFEFLLY 201
            V Q  +  NP   V  PK      +    +D+ +      + + P     R   E +  
Sbjct: 89  LVSQGELKANPAKGVSAPKAPRHLPKNIDVDDVNRLLDI--DLNDPLAVRDRAMLEVMYG 146

Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG---------FMKLLAMTPIGK 252
           +GLR S+     ++HL  +   +     G+     LP G         ++ L  +    +
Sbjct: 147 AGLRLSELVGLDIKHLDLDTGEVWVMGKGS-KERRLPIGRNAVTWIEHWLDLRGLFASDE 205

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAH 287
           E  F++   ++++A      F     K G+N   H
Sbjct: 206 EALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVH 240


>gi|296114058|ref|YP_003627996.1| tyrosine recombinase XerD [Moraxella catarrhalis RH4]
 gi|295921752|gb|ADG62103.1| tyrosine recombinase XerD [Moraxella catarrhalis RH4]
 gi|326559455|gb|EGE09878.1| tyrosine recombinase XerD [Moraxella catarrhalis 7169]
 gi|326561283|gb|EGE11642.1| tyrosine recombinase XerD [Moraxella catarrhalis 46P47B1]
 gi|326565171|gb|EGE15362.1| tyrosine recombinase XerD [Moraxella catarrhalis 103P14B1]
 gi|326567828|gb|EGE17932.1| tyrosine recombinase XerD [Moraxella catarrhalis 12P80B1]
 gi|326568170|gb|EGE18252.1| tyrosine recombinase XerD [Moraxella catarrhalis BC8]
 gi|326572813|gb|EGE22798.1| tyrosine recombinase XerD [Moraxella catarrhalis CO72]
 gi|326573743|gb|EGE23701.1| tyrosine recombinase XerD [Moraxella catarrhalis O35E]
 gi|326574632|gb|EGE24568.1| tyrosine recombinase XerD [Moraxella catarrhalis 101P30B1]
          Length = 307

 Score = 39.7 bits (91), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 59/273 (21%), Positives = 101/273 (36%), Gaps = 23/273 (8%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS---GVESRKHTPS 131
           +SE+R +     L++ +R ++       IR S D          +R+    ++  K +  
Sbjct: 22  LSEFRAAMLARGLSIATRNAYSQDVRLCIRLS-DTPVNLWQPSDVRNHLMCLKDAKKSER 80

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS---- 187
           S  + L S+   F W +   Y   NPC S++ PK      +  +++++            
Sbjct: 81  SIARALASLCQFFLWQIESGYREDNPCESIKTPKLGKTLPKTLSEQEVSSLLDAPDISSV 140

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
            G + +   E L   GLR S+     ++HL      +     G  + + +P G   L A+
Sbjct: 141 RGLRDKAMLEVLYACGLRVSELTSLSLEHLNLTAGWLSVTGKGNKMRL-IPLGEYALSAL 199

Query: 248 TP---------IGK---ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFS 293
                      IGK   +  F+      M    F    K  A  AG+N   S H +R   
Sbjct: 200 NEYLAVRGSLLIGKKDCQAVFLTEQGGYMTRHNFWHLIKKYALMAGINTAISPHTLRHAF 259

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           AT   + GA    +    G   +   + YT  A
Sbjct: 260 ATHLVNHGADLRSVQLLLGHSDLSTTQIYTHVA 292


>gi|15615028|ref|NP_243331.1| integrase/recombinase [Bacillus halodurans C-125]
 gi|34223073|sp|Q9KA25|XERC_BACHD RecName: Full=Tyrosine recombinase xerC
 gi|10175085|dbj|BAB06184.1| integrase/recombinase [Bacillus halodurans C-125]
          Length = 303

 Score = 39.7 bits (91), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 28/114 (24%), Positives = 57/114 (50%), Gaps = 6/114 (5%)

Query: 116 TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
            +H  + +  +++  S+  + L+++R  +++ VR+++V  NP L    PK   +      
Sbjct: 57  VRHYLTVLYEQEYARSTVSRKLSTLRSFYQFLVREKWVMENPFLLAHTPKGVKKLPSFLY 116

Query: 176 KEDMQQFKSFWSEGSQP-----RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
           +E+M+Q     + G  P     R  FE +  SGLR S+ C   +Q +  +I ++
Sbjct: 117 EEEMEQLLDALN-GDSPLQLRNRALFETIYASGLRVSECCGLKLQDVDLSIGTV 169


>gi|312965202|ref|ZP_07779439.1| integrase [Escherichia coli 2362-75]
 gi|312290293|gb|EFR18176.1| integrase [Escherichia coli 2362-75]
          Length = 356

 Score = 39.7 bits (91), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 48/215 (22%), Positives = 83/215 (38%), Gaps = 11/215 (5%)

Query: 25  FRKGHGRRIRLPYPHESTFIPAYMSALTGST--PKREYINSPRKKPTTLKWLISEYRKSA 82
           F  G  RRI +     +  I A +   +G    P    INS      TL   +  Y K  
Sbjct: 35  FGLGRDRRIAI-----TEAIQANIELFSGHKHKPLTARINS--DNSVTLHSWLDRYEKIL 87

Query: 83  HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSM 140
               +   + I++ S    I R   D     ITTK I + +     +   +SA    +++
Sbjct: 88  ASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAMLSGYIDEGKAASAKLIRSTL 147

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200
              F+ A+ + ++  NP  +    K +    R    E ++ +++  S     RLA E  +
Sbjct: 148 SDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEYLKIYQAAESSPCWLRLAMELAV 207

Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
            +G R  D C      + +    ++  KTG  I +
Sbjct: 208 VTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAI 242


>gi|75761152|ref|ZP_00741143.1| DNA integration/recombination/inversion protein [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
 gi|228904570|ref|ZP_04068646.1| DNA integration/recombination/inversion protein [Bacillus
           thuringiensis IBL 4222]
 gi|74491351|gb|EAO54576.1| DNA integration/recombination/inversion protein [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
 gi|228855051|gb|EEM99634.1| DNA integration/recombination/inversion protein [Bacillus
           thuringiensis IBL 4222]
          Length = 392

 Score = 39.7 bits (91), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 91/225 (40%), Gaps = 49/225 (21%)

Query: 60  YINSPRK--KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK 117
           YIN P    K    +WL + Y KS    SL V  + S     ++++    +   + IT K
Sbjct: 60  YINEPDILFKDFVQEWL-NIYSKSTKISSLRVRQKQS-----NKLVDFFANIKMKDITKK 113

Query: 118 HIRSGVESRKHTPSSAIQFL----TSMRVLFKWAVRQEYVAINPCLSVERPKRKTE---- 169
             ++ +    H    A   L    T+ R++FK A+  + +  NP  +V+ P RK E    
Sbjct: 114 MYQTALNDL-HDKGYAFNTLDGIHTAGRMIFKKAIELQIIKSNPTDNVKLP-RKVETVED 171

Query: 170 ------GIRPWTKEDMQQFKSFWSEG--SQPRLAFEFLLYSGLRCSD--SCRAGVQHLQN 219
                  I+   KE++  F     E       + F  L YSGLR  +  + +      +N
Sbjct: 172 IENDKKAIKYLEKEELAHFLQVAKEKGLDNDYVFFSILAYSGLRAGELLALKWTDVDFEN 231

Query: 220 NIFSIKTQKT-------------------GTIITVELPDGFMKLL 245
           N  +IK  KT                   G+I T+++  G MKLL
Sbjct: 232 N--TIKITKTLYNPDNNSQHYHLLTPKTKGSIRTIKMDQGIMKLL 274


>gi|284920553|emb|CBG33615.1| integrase [Escherichia coli 042]
          Length = 356

 Score = 39.7 bits (91), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 48/215 (22%), Positives = 83/215 (38%), Gaps = 11/215 (5%)

Query: 25  FRKGHGRRIRLPYPHESTFIPAYMSALTGST--PKREYINSPRKKPTTLKWLISEYRKSA 82
           F  G  RRI +     +  I A +   +G    P    INS      TL   +  Y K  
Sbjct: 35  FGLGRDRRIAI-----TEAIQANIELFSGHKHKPLTARINS--DNSVTLHSWLDRYEKIL 87

Query: 83  HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSM 140
               +   + I++ S    I R   D     ITTK I + +     +   +SA    +++
Sbjct: 88  ANRGIKQKTLINYMSKIKAIRRGLPDAPLENITTKEIAAMLNGYIDEGKAASAKLIRSTL 147

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200
              F+ A+ + ++  NP  +    K +    R    E ++ +++  S     RLA E  +
Sbjct: 148 SDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEYLKIYQAAESSPCWLRLAMELAV 207

Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
            +G R  D C      + +    ++  KTG  I +
Sbjct: 208 VTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAI 242


>gi|262383756|ref|ZP_06076892.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_33B]
 gi|298375888|ref|ZP_06985844.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_19]
 gi|262294654|gb|EEY82586.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_33B]
 gi|298266925|gb|EFI08582.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_19]
          Length = 302

 Score = 39.7 bits (91), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 60/253 (23%), Positives = 106/253 (41%), Gaps = 35/253 (13%)

Query: 99  FDQIIR--KSGDFDYRKITTKHIRSGVES---RKHTPSSAIQFLTSMRVLFKWAVRQEYV 153
           F + +R  + G FD  +I +  +RS + S    K +P S  + L+S++  FK+ +++  V
Sbjct: 31  FQRYVREHREGVFDPGEIDSDFVRSWIVSLMDEKLSPVSVNRKLSSLKSFFKFLMKRGIV 90

Query: 154 AINPCLSVERPKRKTE---GIRPWTKEDMQQFKSFWS--EGSQPRLAFEFLLYSGLRCSD 208
           + NP   V  PK K      I+    E +     F    EG + RL  E L  +G+R S+
Sbjct: 91  SANPLRLVSGPKTKKPLPYFIKDSELEALLDGDGFDEDFEGVRNRLVIEMLYDTGMRRSE 150

Query: 209 SCRAGVQHLQNNIFSIKTQKTG---TIITVELPDGFMKL-LAMTPI-------GKETFFI 257
               G++++  +  +++ + TG       +   +G   L LA T +         E FF+
Sbjct: 151 LI--GIRNVDVDYEAMQVKVTGKRNKQRLIPFAEGLKNLMLAYTEVRDREVEAAGEWFFV 208

Query: 258 NNDKQKMNATQFSIWFKAKATKAGVN-------KSAHGVRKFSATISADAGATAHELMAT 310
                + N  Q S        K  ++       +S H +R   AT   + GA  + +   
Sbjct: 209 -----RKNGNQLSTGIVYNIVKKQLSEIPMLAKRSPHVLRHSFATSMLNNGAELNAVKDL 263

Query: 311 YGWKTVDQAETYT 323
            G  ++     YT
Sbjct: 264 LGHSSLASTSVYT 276


>gi|260866896|ref|YP_003233298.1| putative integrase [Escherichia coli O111:H- str. 11128]
 gi|257763252|dbj|BAI34747.1| putative integrase [Escherichia coli O111:H- str. 11128]
 gi|323179992|gb|EFZ65548.1| integrase [Escherichia coli 1180]
          Length = 358

 Score = 39.7 bits (91), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 48/215 (22%), Positives = 83/215 (38%), Gaps = 11/215 (5%)

Query: 25  FRKGHGRRIRLPYPHESTFIPAYMSALTGST--PKREYINSPRKKPTTLKWLISEYRKSA 82
           F  G  RRI +     +  I A +   +G    P    INS      TL   +  Y K  
Sbjct: 37  FGLGRDRRIAI-----TEAIQANIELFSGHKHKPLTARINS--DNSVTLHSWLDRYEKIL 89

Query: 83  HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSM 140
               +   + I++ S    I R   D     ITTK I + +     +   +SA    +++
Sbjct: 90  ASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAMLSGYIDEGKAASAKLIRSTL 149

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200
              F+ A+ + ++  NP  +    K +    R    E ++ +++  S     RLA E  +
Sbjct: 150 SDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEYLKIYQAAESSPCWLRLAMELAV 209

Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
            +G R  D C      + +    ++  KTG  I +
Sbjct: 210 VTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAI 244


>gi|297205885|ref|ZP_06923280.1| tyrosine recombinase XerD [Lactobacillus jensenii JV-V16]
 gi|297149011|gb|EFH29309.1| tyrosine recombinase XerD [Lactobacillus jensenii JV-V16]
          Length = 300

 Score = 39.7 bits (91), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 39/208 (18%), Positives = 89/208 (42%), Gaps = 23/208 (11%)

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQP 192
           +T++R  +++ +RQ  + ++P + ++ PK++       ++++++Q  +      + G + 
Sbjct: 77  ITTLRRFYRYLLRQHILVVDPLIQIDTPKQEKRLPLALSQKEVEQLLAQPDIKTTTGLRD 136

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--------TIITVELPDGFMK- 243
           R   E L  +G+R S+        L  ++  I+    G        T   +   D ++K 
Sbjct: 137 RAILELLYATGMRVSELINLKEADLHTDLKIIRVLGKGSKERLVPVTDFALNWLDKYLKN 196

Query: 244 ----LLAMTPIGKETFFINNDKQKMNATQFSIW--FKAKATKAGVNK--SAHGVRKFSAT 295
                L    +  +  F+NN   ++  T+ ++W   K  +  A ++K  + H +R   AT
Sbjct: 197 VRDPALLKKGVACDFLFLNNRAGQL--TRQAVWQSIKKYSKLAKIDKDITPHTLRHTFAT 254

Query: 296 ISADAGATAHELMATYGWKTVDQAETYT 323
              + GA    +    G   +   + YT
Sbjct: 255 HLLENGADLRVVQEILGHSDISTTQIYT 282


>gi|77412620|ref|ZP_00788901.1| site-specific recombinase, phage integrase family [Streptococcus
           agalactiae CJB111]
 gi|77161330|gb|EAO72360.1| site-specific recombinase, phage integrase family [Streptococcus
           agalactiae CJB111]
          Length = 368

 Score = 39.7 bits (91), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 40/183 (21%), Positives = 76/183 (41%), Gaps = 27/183 (14%)

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
           K++P+ A       +    +A R  Y+   PC S++ PK K    + WT ED+++  + +
Sbjct: 134 KYSPNYAKGVWIRFKHCIGYAERLGYIDEFPCKSLDNPKGKRPDTKFWTLEDLKKVVATF 193

Query: 187 S----EGSQPRLAFEFLLYSGLRCSDS----------------CRAGVQHLQNNIFSIK- 225
                E      A     ++GLR S+                  ++ +++  N +F+ K 
Sbjct: 194 DLRDYEERHRFTAIWLYFFTGLRVSEGLSLIWSDIDFDKKLLHVQSTLEYEGNGVFTRKN 253

Query: 226 -TQKTGTIITVELPDGFMKLLA-----MTPIGKETFFINNDKQKMNATQFSIWFKAKATK 279
            T+ +  I  +EL D  + +L          G +++ +    + +N    S   K +A K
Sbjct: 254 PTKTSAGIRWIELDDETLNVLLRWRSIQVENGDDSYVLARFGKPLNKCTLSRILKRQAKK 313

Query: 280 AGV 282
           AGV
Sbjct: 314 AGV 316


>gi|116873397|ref|YP_850178.1| integrase/recombinase [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116742275|emb|CAK21399.1| integrase/recombinase [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 297

 Score = 39.7 bits (91), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 46/213 (21%), Positives = 88/213 (41%), Gaps = 24/213 (11%)

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           S  +++ S+R  F + +    ++ +P + +E PK+     +    +D+++  S  S+ S 
Sbjct: 70  SVARYIASLRSFFHYLMHDGKMSHDPMIQIETPKQAQSLPKVLNLDDVEKLLS-SSDIST 128

Query: 192 P-----RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-------------TII 233
           P     +   E L  +GLR ++  R  +  L  ++  I+T   G             T++
Sbjct: 129 PLGLRDQAMMEILYATGLRVTELVRLKMDDLHLHMGFIQTIGKGDKERIIPLGKTATTVL 188

Query: 234 TVELPDGFMKLLAMTPIGKETF-FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290
              L +   KL    P  +  F F+N+  Q +    F    K  A ++G+ K  + H +R
Sbjct: 189 EQYLEEARPKL--RRPKYRNDFVFLNHHGQGLTRQGFWKILKGIAKESGIEKPITPHTLR 246

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYT 323
              AT   + GA    +    G   +   + YT
Sbjct: 247 HSFATHLLENGADLRSVQELLGHADISTTQIYT 279


>gi|56415803|ref|YP_152878.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197364733|ref|YP_002144370.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|56130060|gb|AAV79566.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197096210|emb|CAR61807.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
          Length = 300

 Score = 39.7 bits (91), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 45/215 (20%), Positives = 86/215 (40%), Gaps = 23/215 (10%)

Query: 93  ISFESYFDQIIRKSGDF---DYRKITTKHIRS-GVESRKHT--PSSAIQFLTSMRVLFKW 146
           ++++   D II  +G+     +++     +RS  V SR+    P+S    L+++R  F W
Sbjct: 29  LNYQRQLDAIIALAGETGLKSWQQCDAAIVRSFAVRSRRKGLGPASLALRLSALRSFFDW 88

Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP-----RLAFEFLLY 201
            V Q  +  NP   V  PK      +    +D+ +      + + P     R   E +  
Sbjct: 89  LVSQGELKANPAKGVSAPKAPRHLPKNIDVDDVNRLLDI--DLNDPLAVRDRAMLEVMYG 146

Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG---------FMKLLAMTPIGK 252
           +GLR S+     ++HL  +   +     G+     LP G         ++ L  +    +
Sbjct: 147 AGLRLSELVGLDIKHLDLDTGEVWVMGKGS-KERRLPIGRNAVTWIEHWLDLRGLFASDE 205

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAH 287
           E  F++   ++++A      F     K G+N   H
Sbjct: 206 EALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVH 240


>gi|320654274|gb|EFX22329.1| Phage integrase family protein [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
          Length = 356

 Score = 39.3 bits (90), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 48/215 (22%), Positives = 83/215 (38%), Gaps = 11/215 (5%)

Query: 25  FRKGHGRRIRLPYPHESTFIPAYMSALTGST--PKREYINSPRKKPTTLKWLISEYRKSA 82
           F  G  RRI +     +  I A +   +G    P    INS      TL   +  Y K  
Sbjct: 35  FGLGRDRRIAI-----TEAIQANIELFSGHKHKPLTTRINS--DNSVTLHSWLDRYEKIL 87

Query: 83  HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSM 140
               +   + I++ S    I R   D     ITTK I + +     +   +SA    +++
Sbjct: 88  ASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAMLNGYIDEGKAASAKLIRSTL 147

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200
              F+ A+ + ++  NP  +    K +    R    E ++ +++  S     RLA E  +
Sbjct: 148 SDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEYLKIYQAAESSPCWLRLAMELAV 207

Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
            +G R  D C      + +    ++  KTG  I +
Sbjct: 208 VTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAI 242


>gi|257055983|ref|YP_003133815.1| site-specific recombinase XerD [Saccharomonospora viridis DSM
           43017]
 gi|256585855|gb|ACU96988.1| site-specific recombinase XerD [Saccharomonospora viridis DSM
           43017]
          Length = 354

 Score = 39.3 bits (90), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 55/123 (44%), Gaps = 16/123 (13%)

Query: 105 KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP 164
           KS D  YR +  K    G       P S  ++ T++R LF+WAV + YV ++P + V  P
Sbjct: 74  KSPDRRYR-VGVKIAEDGSTPPGRGPYSLARWFTAVRGLFRWAVDKGYVQVDPTVKVTPP 132

Query: 165 KRKTE------GIRPWTKEDMQQFKSFWSEG---SQPRLA------FEFLLYSGLRCSDS 209
           +  T       G+R      +++  +  S G   +  RL+         L+ SG R S+ 
Sbjct: 133 RVPTRVGGTRVGLRLDEALTLREAPAVRSSGQLRADQRLSLRDEAILRLLVESGPRVSEL 192

Query: 210 CRA 212
           C A
Sbjct: 193 CGA 195


>gi|289596337|ref|YP_003483033.1| integrase family protein [Aciduliprofundum boonei T469]
 gi|289534124|gb|ADD08471.1| integrase family protein [Aciduliprofundum boonei T469]
          Length = 284

 Score = 39.3 bits (90), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 44/210 (20%), Positives = 82/210 (39%), Gaps = 14/210 (6%)

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           RK++ +S      ++R  FK      Y  ++   ++  PKR  +  +  +++++++    
Sbjct: 67  RKYSKNSLYLATKAIRSYFK------YKNLDTAKNLSSPKRPRQMPKYLSEDEVKRLIEA 120

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN--IFSIKTQKTG----TIITVELPD 239
            SE  +       L YSGLR S+ C   ++ +  N  I  + + K       +++  + +
Sbjct: 121 SSENPRDYAIISLLAYSGLRVSELCNLKIEDVDFNERIVYVHSGKGDKDRIVVVSPRVIE 180

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATIS 297
                L       E  F +    K++  Q     K  A KAG+ K    H +R   AT  
Sbjct: 181 ALQNYLYTREDDMEYLFASQKSNKISRVQVFRIVKKYAEKAGIKKEVTPHVLRHTLATTL 240

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGAD 327
              G     +    G  +V   + YT   D
Sbjct: 241 LRRGVDIRFIQQFLGHSSVATTQIYTHVDD 270


>gi|215485788|ref|YP_002328219.1| predicted integrase [Escherichia coli O127:H6 str. E2348/69]
 gi|260854001|ref|YP_003227892.1| putative integrase [Escherichia coli O26:H11 str. 11368]
 gi|215263860|emb|CAS08198.1| predicted integrase [Escherichia coli O127:H6 str. E2348/69]
 gi|257752650|dbj|BAI24152.1| putative integrase [Escherichia coli O26:H11 str. 11368]
 gi|323155048|gb|EFZ41237.1| integrase [Escherichia coli EPECa14]
          Length = 356

 Score = 39.3 bits (90), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 48/215 (22%), Positives = 83/215 (38%), Gaps = 11/215 (5%)

Query: 25  FRKGHGRRIRLPYPHESTFIPAYMSALTGST--PKREYINSPRKKPTTLKWLISEYRKSA 82
           F  G  RRI +     +  I A +   +G    P    INS      TL   +  Y K  
Sbjct: 35  FGLGRDRRIAI-----TEAIQANIELFSGHKHKPLTARINS--DNSVTLHSWLDRYEKIL 87

Query: 83  HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSM 140
               +   + I++ S    I R   D     ITTK I + +     +   +SA    +++
Sbjct: 88  ASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAMLSGYIDEGKAASAKLIRSTL 147

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200
              F+ A+ + ++  NP  +    K +    R    E ++ +++  S     RLA E  +
Sbjct: 148 SDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEYLKIYQAAESSPCWLRLAMELAV 207

Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
            +G R  D C      + +    ++  KTG  I +
Sbjct: 208 VTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAI 242


>gi|138559|sp|P27078|VINT_BP434 RecName: Full=Integrase
 gi|215353|gb|AAA67900.1| integrase [Phage 434]
          Length = 356

 Score = 39.3 bits (90), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 48/215 (22%), Positives = 83/215 (38%), Gaps = 11/215 (5%)

Query: 25  FRKGHGRRIRLPYPHESTFIPAYMSALTGST--PKREYINSPRKKPTTLKWLISEYRKSA 82
           F  G  RRI +     +  I A +   +G    P    INS      TL   +  Y K  
Sbjct: 35  FGLGRDRRIAI-----TEAIQANIELFSGHKHKPLTARINS--DNSVTLHSWLDRYEKIL 87

Query: 83  HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSM 140
               +   + I++ S    I R   D     ITTK I + +     +   +SA    +++
Sbjct: 88  ASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAMLSGYIDEGKAASAKLIRSTL 147

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200
              F+ A+ + ++  NP  +    K +    R    E ++ +++  S     RLA E  +
Sbjct: 148 SDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEYLKIYQAAESSPCWLRLAMELAV 207

Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
            +G R  D C      + +    ++  KTG  I +
Sbjct: 208 VTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAI 242


>gi|256851002|ref|ZP_05556391.1| tyrosine recombinase XerD [Lactobacillus jensenii 27-2-CHN]
 gi|260661214|ref|ZP_05862128.1| tyrosine recombinase XerD [Lactobacillus jensenii 115-3-CHN]
 gi|282932045|ref|ZP_06337503.1| tyrosine recombinase XerD [Lactobacillus jensenii 208-1]
 gi|256616064|gb|EEU21252.1| tyrosine recombinase XerD [Lactobacillus jensenii 27-2-CHN]
 gi|260548151|gb|EEX24127.1| tyrosine recombinase XerD [Lactobacillus jensenii 115-3-CHN]
 gi|281303812|gb|EFA95956.1| tyrosine recombinase XerD [Lactobacillus jensenii 208-1]
          Length = 300

 Score = 39.3 bits (90), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 39/208 (18%), Positives = 89/208 (42%), Gaps = 23/208 (11%)

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQP 192
           +T++R  +++ +RQ  + ++P + ++ PK++       ++++++Q  +      + G + 
Sbjct: 77  ITTLRRFYRYLLRQHILVVDPLIQIDTPKQEKRLPLALSQKEVEQLLAQPDIKTTTGLRD 136

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--------TIITVELPDGFMK- 243
           R   E L  +G+R S+        L  ++  I+    G        T   +   D ++K 
Sbjct: 137 RAILELLYATGMRVSELINLKEADLHTDLKIIRVLGKGSKERLVPVTDFALSWLDKYLKN 196

Query: 244 ----LLAMTPIGKETFFINNDKQKMNATQFSIW--FKAKATKAGVNK--SAHGVRKFSAT 295
                L    +  +  F+NN   ++  T+ ++W   K  +  A ++K  + H +R   AT
Sbjct: 197 VRDPALLKKGVACDFLFLNNRAGQL--TRQAVWQSIKKYSKLAKIDKDITPHTLRHTFAT 254

Query: 296 ISADAGATAHELMATYGWKTVDQAETYT 323
              + GA    +    G   +   + YT
Sbjct: 255 HLLENGADLRVVQEILGHSDISTTQIYT 282


>gi|228950418|ref|ZP_04112578.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228809233|gb|EEM55694.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
          Length = 369

 Score = 39.3 bits (90), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 26/120 (21%), Positives = 57/120 (47%), Gaps = 5/120 (4%)

Query: 93  ISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL---FKWAV 148
           + + ++ +Q +I   G     K+   HI+   ++      +    L   R+L      AV
Sbjct: 86  VGYRAFLNQHVIPSIGMVALHKLNVMHIQKCYKTAIDKGIANNSVLLMHRILKSALNLAV 145

Query: 149 RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD 208
           +Q  ++ NP    E PK++   I+ WT+E++++F    S+ S+  + +   + +G+R  +
Sbjct: 146 KQNIISRNPADFAEIPKKERTSIQTWTEEEVKKF-LLHSQESRYHIGYLLAITTGMRMGE 204


>gi|37525093|ref|NP_928437.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|37527552|ref|NP_930896.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|36784519|emb|CAE13419.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
 gi|36786987|emb|CAE16061.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 370

 Score = 39.3 bits (90), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 45/208 (21%), Positives = 76/208 (36%), Gaps = 20/208 (9%)

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-----PWTKEDMQQFKSFWSEGSQ 191
           L  ++V FKW  +Q  +  NP   +E P+ +    R       T++ + Q      +G +
Sbjct: 109 LEPLKVWFKWLTKQNLILANPAADIELPRLEKHLPRYILTIDETEQILAQPDLTTLQGIR 168

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL------- 244
            R   E L  +G+R  +  R  V  +     ++  ++        LP G   L       
Sbjct: 169 DRALMELLWSTGMRRGELTRLDVYSVDGKRKTVTIRQGKGNKDRVLPLGERALSWLQRYQ 228

Query: 245 ------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATI 296
                 L + P  K  F   +    + A   S    A     G+ K  + H  R   AT 
Sbjct: 229 QQVRPQLIVNPDVKALFVAMDGLDGLQANGISNLVTAYINAVGIEKKGACHLFRHAMATQ 288

Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324
             + GA    + A  G  +V+  + YT+
Sbjct: 289 MLENGADLRWIQAMLGHASVESTQVYTQ 316


>gi|293404020|ref|ZP_06648014.1| integrase [Escherichia coli FVEC1412]
 gi|298379800|ref|ZP_06989405.1| integrase [Escherichia coli FVEC1302]
 gi|291428606|gb|EFF01631.1| integrase [Escherichia coli FVEC1412]
 gi|298279498|gb|EFI21006.1| integrase [Escherichia coli FVEC1302]
          Length = 293

 Score = 39.3 bits (90), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 32/145 (22%), Positives = 60/145 (41%), Gaps = 2/145 (1%)

Query: 93  ISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQ 150
           I++ S    I R   D     ITTK I + +     +   +SA    +++   F+ A+ +
Sbjct: 35  INYMSKIKAIRRGLPDVPLEDITTKEIAAMLNGYIDEGKAASAKLIRSTLSDAFREAIAE 94

Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210
            ++  NP  +    K +    R    E ++ +++  S     RLA E  + +G R  D C
Sbjct: 95  GHITTNPVAATRAAKSEVRRSRLTADEYLKIYQAAESSPCWLRLAMELAVVTGQRVGDLC 154

Query: 211 RAGVQHLQNNIFSIKTQKTGTIITV 235
                 + +    ++  KTG  I +
Sbjct: 155 EMKWSDIVDGYLYVEQSKTGVKIAI 179


>gi|194398664|ref|YP_002038654.1| phage integrase family site-specific recombinase [Streptococcus
           pneumoniae G54]
 gi|194358331|gb|ACF56779.1| site-specific recombinase, phage integrase family [Streptococcus
           pneumoniae G54]
          Length = 377

 Score = 39.3 bits (90), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 32/140 (22%), Positives = 66/140 (47%), Gaps = 9/140 (6%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT--KHIRSGVESRKHTPSSAI- 134
           +RK+++  +   N     + YF  ++   G   Y  I    +H+R  V      P S   
Sbjct: 78  HRKASYINTQDNNYNKHIKDYFS-MVDNVGKLTYEDIYQFREHLRQKVAKNSDKPLSTNT 136

Query: 135 --QFLTSMRVLFKWAVRQEYVAINPCLSVER-PKRKTEGIRPWTKEDMQQFKSFWS-EGS 190
             + +  ++ +F   +R+ Y + NP   +++ P  KT+ ++ WT ++ Q+F + +  E  
Sbjct: 137 INKIMILLKKIFDVGLRKGYYSSNPAKLIKKLPIEKTK-MQFWTVKEFQKFLTLFEPEEY 195

Query: 191 QPRLAFEFLLYSGLRCSDSC 210
             +L F  L ++GLR  ++ 
Sbjct: 196 NIKLLFTVLFFTGLRLGEAL 215


>gi|189502574|ref|YP_001958291.1| hypothetical protein Aasi_1239 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189498015|gb|ACE06562.1| hypothetical protein Aasi_1239 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 299

 Score = 39.3 bits (90), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 47/211 (22%), Positives = 88/211 (41%), Gaps = 18/211 (8%)

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ----QFKSFW 186
           +S  + L+++R  +++ + + Y+  +P   VERP    +     +  +++          
Sbjct: 71  TSQARILSAIRGFYQFLLLEGYLETDPTKLVERPVLGRKLPHTLSVHEIEILFGTIDHST 130

Query: 187 SEGSQPRLAFEFLLYSGLRCSD--SCRAGVQHLQNNIFSI--KTQKTGTIITVELPDGFM 242
           + G + R   E L  SGLR S+  S R    + +     +  K  K   +   ++   ++
Sbjct: 131 AMGMRNRAMLETLYSSGLRVSELISLRMSDIYFEEMFLQVLGKGNKQRLVPIGKIALKYL 190

Query: 243 KLLAMT-----PIGKET---FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292
           ++         PI KE     F+N    KM+     +  K  A+KAG+ +  S H  R  
Sbjct: 191 RIYIEEVRIHFPIKKEAANCVFLNKRGSKMSRVMVFLIIKELASKAGLQQEISPHTFRHS 250

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYT 323
            AT   + GA    + A  G +++   E YT
Sbjct: 251 FATHLVEGGADLRAVQAMLGHESITTTEIYT 281


>gi|319641868|ref|ZP_07996545.1| transposase [Bacteroides sp. 3_1_40A]
 gi|317386541|gb|EFV67443.1| transposase [Bacteroides sp. 3_1_40A]
          Length = 407

 Score = 39.3 bits (90), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 51/221 (23%), Positives = 87/221 (39%), Gaps = 25/221 (11%)

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
           S+K   ++A ++L + + + + A+ + ++  +P L +     K E   P   ED +  K 
Sbjct: 178 SKKCCHNTATKYLKNFKKIIRIALAKGWMKNDPFLEIRFSLDKVE---PDFLEDSEIRKL 234

Query: 185 FWSEGSQPRLA-----FEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-----TQKTGTIIT 234
              E   PRL      F F  ++GL  SD    G +H+  +   ++      QKT  +  
Sbjct: 235 ISKEIDIPRLGQVRDIFVFCCFTGLAFSDIHGLGKEHIVEDSNGVRWIRKGRQKTKIMCN 294

Query: 235 VELPDGFMKLLAMTPIGKE-----TFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287
           + L +  +K+L      +        F     QKMNA     + K  A   G+ K  + H
Sbjct: 295 IPLMEVPLKILEKYSTNEYCRKHGVLFPVLCNQKMNA-----YLKELADICGIKKTLTTH 349

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
             R   AT +   G +   +    G   V     Y +  DR
Sbjct: 350 VARHTFATFALANGVSIESVAKMLGHTNVQMTRHYARVLDR 390


>gi|227891778|ref|ZP_04009583.1| phage integrase [Lactobacillus salivarius ATCC 11741]
 gi|227866437|gb|EEJ73858.1| phage integrase [Lactobacillus salivarius ATCC 11741]
          Length = 381

 Score = 39.3 bits (90), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 52/250 (20%), Positives = 105/250 (42%), Gaps = 42/250 (16%)

Query: 107 GDFDYRKITTKHIRSGV-ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165
            D    KIT +H +  V ++   TP   +  ++ ++    +A+R   +  NP L V +PK
Sbjct: 106 NDMYVDKITVRHCQDFVSKAFVTTPKGYVYLISIVKNTLDYALRLGMIESNPMLYVIKPK 165

Query: 166 RKT----EGIRPWTKEDMQQFKSFWSEGSQPRLA-FEFLLYSGLRCSDSCRAGVQH---L 217
           ++     +    + K+++++F       +Q +   F  L YSG+R  + C A   H    
Sbjct: 166 KQATISDKHDNFYNKDELKKFLEVAKYYNQEKYTIFRLLAYSGIRIGE-CLALTWHDLDY 224

Query: 218 QNNIFSI----------------KTQKTGTIITVELP-------------DGFMKLLAMT 248
           +NN  +I                KT+ +  +I++++                 +K + + 
Sbjct: 225 KNNTITINKTLARTDKGITIQTPKTKASNRVISLDVETIQILKSWQLEQRKQLLK-IGIN 283

Query: 249 PIGKETFFINNDKQK-MNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHE 306
            + K     N++K   + ++  +   K  A KAG++  ++HG R   AT+   +G    +
Sbjct: 284 SMNKHQLIFNSNKNSFIFSSVITYDIKQIAKKAGIHPITSHGFRHTHATLLFASGMDIKQ 343

Query: 307 LMATYGWKTV 316
           + A  G   V
Sbjct: 344 VQARLGHSKV 353


>gi|256822057|ref|YP_003146020.1| tyrosine recombinase XerD [Kangiella koreensis DSM 16069]
 gi|256795596|gb|ACV26252.1| tyrosine recombinase XerD [Kangiella koreensis DSM 16069]
          Length = 295

 Score = 39.3 bits (90), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 45/237 (18%), Positives = 91/237 (38%), Gaps = 53/237 (22%)

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
           +++++  S  +FL+S R  +++ ++   + ++P   ++ PK +    +  +++++    S
Sbjct: 62  TKQYSSRSTARFLSSARKFYRYLIQSNQIKVDPTQQIDSPKIQPPVPKSLSEDEVDSLLS 121

Query: 185 ----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
                 + G + +   E L  SGLR ++            + S++  + G         G
Sbjct: 122 QPDLETALGLRDKAMLELLYSSGLRITE------------LISVEVNQIG------FQQG 163

Query: 241 FMKLLA------MTPIGKET-----------------------FFINNDKQKMNATQFSI 271
            M+++       + PIG+E                         F++   Q+M    F  
Sbjct: 164 VMRVIGKGNKERLVPIGEEALQAISLYIRHGRAELANEKVCDWLFLSTRGQRMTRQTFWH 223

Query: 272 WFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
             K  A  AG+ K  S H +R   AT   + GA    L    G   +   + YT  A
Sbjct: 224 RIKLYAKTAGIRKHLSPHTLRHAFATHLLNHGADLRTLQMLLGHSDLSTTQIYTHVA 280


>gi|284007611|emb|CBA73220.1| phage integrase [Arsenophonus nasoniae]
          Length = 336

 Score = 39.3 bits (90), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 67/163 (41%), Gaps = 11/163 (6%)

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ-PRLAFEFLLYS 202
           F+ A+    + INP  S + PK K +  R  + ED        + G      A +  L +
Sbjct: 139 FREAISLGLIQINPVTSTKTPKIKIQRAR-LSLEDFNTILGLINNGHHWLTHAMKLALVT 197

Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL-LAMT---PIGKETFFIN 258
           G R SD  +   + + +    I  QKTG+ I + L      + L+ T    +    F IN
Sbjct: 198 GQRVSDVSKIKYKDIHDGKLWIIQQKTGSKIAIPLDIELYGIKLSKTIADCVNNSEFVIN 257

Query: 259 NDKQKMNATQFSIWFK-----AKATKAGVNKSAHGVRKFSATI 296
           N+  K+   + S  F+     ++    G   S H +R  SA +
Sbjct: 258 NNGNKITVERISKEFRRFRDISQLNWVGEPPSFHEIRSLSARL 300


>gi|237746680|ref|ZP_04577160.1| site specific integrase/recombinase [Oxalobacter formigenes HOxBLS]
 gi|229378031|gb|EEO28122.1| site specific integrase/recombinase [Oxalobacter formigenes HOxBLS]
          Length = 326

 Score = 39.3 bits (90), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 57/279 (20%), Positives = 107/279 (38%), Gaps = 43/279 (15%)

Query: 87  LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH----TPSSAIQFLTSMRV 142
           L+ N+  S+     Q+   +G+    ++++  IR  V SR H    +P S  + L++ R 
Sbjct: 24  LSGNTLDSYRRDLAQLTEMAGETGLNRLSSTDIRRFV-SRLHASGLSPRSIGRKLSAWRG 82

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW------SEGSQP---- 192
            F+W V +  ++ NP   +  PK+     +  + +D  +  S        S   Q     
Sbjct: 83  FFQWLVDEALLSTNPAEDIHAPKKSKPLPKALSVDDAVRLVSSGPADTNASSAGQAAALC 142

Query: 193 -RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS----IKTQKTGTIITVE------LPDGF 241
            R  FE L  SGLR S+     +Q ++   +     I   +    +T +      +P G 
Sbjct: 143 DRAMFELLYSSGLRVSELTGLDIQAVRQAGYVSAGWIDLNEKEVTVTGKGNKTRIVPAGD 202

Query: 242 MKLLAM---------------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAG--VNK 284
             + A+                P      F+N+  ++++  Q  +  KA A + G  VN 
Sbjct: 203 AAITAVRNWLAARDNLVHPEALPRDAFALFVNSRGKRISPRQVQLRLKAHAKRLGLPVNV 262

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
             H +R   A+    +      +    G  ++   + YT
Sbjct: 263 HPHVLRHSFASHILQSSGDLRAVQEMLGHSSIASTQIYT 301


>gi|150026059|ref|YP_001296885.1| tyrosine recombinase XerD [Flavobacterium psychrophilum JIP02/86]
 gi|149772600|emb|CAL44083.1| Tyrosine recombinase XerD [Flavobacterium psychrophilum JIP02/86]
          Length = 299

 Score = 39.3 bits (90), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 45/216 (20%), Positives = 84/216 (38%), Gaps = 18/216 (8%)

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
           S+   P S  + ++ ++  F + + ++Y   NP   +E P+   +       ED+ +  +
Sbjct: 64  SKSVNPRSQARTISGLKSFFSYLIFEDYRPDNPLALIETPRLGRKLPDTLNIEDIDKLIA 123

Query: 185 FW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT----IITVE 236
                 +EG + R   E L   GLR S+     +  L      IK    G     +   E
Sbjct: 124 AINLTTNEGERNRAMLETLYACGLRVSELVSLKISDLFFAEGFIKITGKGNKQRFVPISE 183

Query: 237 LPDGFMK--------LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286
               +++        LL++    ++T F+N   +++         K  A + G+NK  S 
Sbjct: 184 YTQKYIEIYKNTDRNLLSIQKGHEDTLFLNRRGRQLTRAMIFTIIKNLAVEIGLNKVISP 243

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           H  R   AT   + GA    +    G +++   E Y
Sbjct: 244 HTFRHSFATHLLENGADLRSIQLMLGHESITTTEIY 279


>gi|121594170|ref|YP_986066.1| phage integrase family protein [Acidovorax sp. JS42]
 gi|120606250|gb|ABM41990.1| phage integrase family protein [Acidovorax sp. JS42]
          Length = 538

 Score = 39.3 bits (90), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 58/220 (26%), Positives = 93/220 (42%), Gaps = 38/220 (17%)

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPC--LSVERPKRKTEGIRPWTKEDMQQFKS-- 184
           T ++A   L S+R LF  A  + ++  NP   LSVE   +++EG  PWTK+++    S  
Sbjct: 277 TATTADNILVSLRALFNVARDRGWLTSNPLERLSVEIGGKESEGREPWTKDELGLIFSDP 336

Query: 185 FWSEGSQP-------RLAFEFLL---YSGLRCSD---------SCRAGVQHLQNNIFSIK 225
            W++ + P         A+   L   Y+G R ++         +   G +  +    + +
Sbjct: 337 VWTQHAIPIDKKAGKEAAYWIPLIACYTGARLTEIAQLWTDDVATEPGKETFEFRADAQR 396

Query: 226 TQK---TGTIITVEL-PD----GFMKLLAMTPIGKETFFINNDKQKMNAT--QFSIWFKA 275
            QK   +G+   V + P+    GF   +   P G  + F +  K+  N    QF  WF +
Sbjct: 397 DQKLKNSGSWRAVPMHPELIRLGFCDYVQSLPKG--SLFPHLPKEGKNGAGGQFGKWFGS 454

Query: 276 KATKAGVN---KSAHGVRKFSATISADAGATAHELMATYG 312
             +  G     KS H  R   AT    AGAT  +  A  G
Sbjct: 455 FKSAKGFTSPAKSFHSFRHLVATELRLAGATDAQADAITG 494


>gi|325103601|ref|YP_004273255.1| integrase family protein [Pedobacter saltans DSM 12145]
 gi|324972449|gb|ADY51433.1| integrase family protein [Pedobacter saltans DSM 12145]
          Length = 389

 Score = 39.3 bits (90), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 54/218 (24%), Positives = 86/218 (39%), Gaps = 20/218 (9%)

Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
           H+R  V+  KH    AI    S+    + AV  +    NP    +    K     P   +
Sbjct: 165 HLRK-VKKLKHNSIQAIH--VSINGFIREAVECKVNVENPYKKFKIKAYKRGKRDPLEID 221

Query: 178 DMQQFKSFWSEGSQPRLAFEFL---LYS---GLRCSDSCRAGVQHLQNNIFSIKTQKT-- 229
           ++++ K  +       +  E L   L+S   GLR SD+     ++++N + +I T K   
Sbjct: 222 ELKRLKHLYKAQHLEEIQQEVLRKYLFSCETGLRISDNNALDYENIENKVLTINTVKGES 281

Query: 230 -GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286
            G ++TV L    + L+ +    +   F N   Q +N        K  A+KA +  N + 
Sbjct: 282 FGVVVTVPLTKYAISLIDIKK-RRGPVFRNISDQVVNRN-----LKVIASKAEIYRNLTF 335

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           H  R   AT   DAG  A  L    G   +     Y K
Sbjct: 336 HSSRDTMATNFIDAGGNAETLKELLGHSDIKTTMIYVK 373


>gi|311030138|ref|ZP_07708228.1| site-specific tyrosine recombinase XerC [Bacillus sp. m3-13]
          Length = 302

 Score = 39.3 bits (90), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 45/222 (20%), Positives = 85/222 (38%), Gaps = 21/222 (9%)

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           +  +K+   S  +  +S+R  +K+ +R+E V  NP  SV  PK++    +    E++ + 
Sbjct: 63  LHQKKYARKSVARKTSSLRSFYKFLLREEKVEQNPFTSVSLPKQEKRLPQFLYSEELDKL 122

Query: 183 KSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT------- 231
            +        G + +   E L  +G+R S+ C   +  +   + +I     G        
Sbjct: 123 FAVSDLETPLGQRNQAILELLYATGIRISECCHIQIHDIDFQVGTILVTGKGNKQRYIPF 182

Query: 232 ------IITVELPDGFMKLLA--MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG-- 281
                  I + L DG   LL    TP   +  F+N     +      +       +A   
Sbjct: 183 GSFAQDAIKIYLEDGRKSLLEKQKTPNSTKHLFLNFRGGALTPRGVRLILNDMVQQACST 242

Query: 282 VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           ++ S H +R   AT   + GA    +    G  ++   + YT
Sbjct: 243 LHISPHMLRHTFATHMLNEGADLRVVQELLGHASLSSTQIYT 284


>gi|304386123|ref|ZP_07368463.1| site-specific recombinase [Pediococcus acidilactici DSM 20284]
 gi|304327850|gb|EFL95076.1| site-specific recombinase [Pediococcus acidilactici DSM 20284]
          Length = 396

 Score = 39.3 bits (90), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 50/226 (22%), Positives = 86/226 (38%), Gaps = 39/226 (17%)

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP----WTKEDMQQFKSFWS--E 188
           ++L    ++F +A+R EYV  NPC  V  P+ + +        WT++++  F  + +   
Sbjct: 145 KWLNYASMIFDYALRAEYVGRNPCTLVTMPRVQEQAGEKLENFWTRDELNTFFDYVTPER 204

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------GTII--------- 233
             +    F  L YSG+R  +      + +     +++  KT      G +I         
Sbjct: 205 DVEQFTMFRVLAYSGIRKGELLALTWKDINFEDNTLRVNKTLTQGLGGKLIVQPPKSRAG 264

Query: 234 --TVELPDGFMKLLAM-TPIGKETFF-----INNDKQKM---NATQF------SIWFKAK 276
             T++L D  M+ L     + +ETF       NN  Q +   N   F      + W    
Sbjct: 265 RRTIDLDDSTMRYLRQWKGVQRETFLGMGFNTNNVDQLVFASNRNHFRSMNTPTKWLNKA 324

Query: 277 ATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
               G+   S HG R   A++   +G    E     G    D + T
Sbjct: 325 IKATGLKHISIHGFRHTHASLLYQSGVGLKETQQRLGHSRADSSVT 370


>gi|153810889|ref|ZP_01963557.1| hypothetical protein RUMOBE_01273 [Ruminococcus obeum ATCC 29174]
 gi|149833285|gb|EDM88367.1| hypothetical protein RUMOBE_01273 [Ruminococcus obeum ATCC 29174]
          Length = 280

 Score = 39.3 bits (90), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 46/232 (19%), Positives = 99/232 (42%), Gaps = 27/232 (11%)

Query: 99  FDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158
            DQI  K+ D +  +   K  +SG ++  +      + ++++R  + +  ++E +  NP 
Sbjct: 9   LDQI--KAVDLEEYQEYLKLYQSGDKTETNGERGLKRKISALRSFYAYYYKREMIHTNPT 66

Query: 159 LSVERPKRKTEGIRPWTKEDMQ---------------QFKSFWSEGSQPRLAF-EFLLYS 202
           + ++ PK   + I     +++                Q + F+ +  +  LA    LL +
Sbjct: 67  VLIDVPKIHEKSIIRLDTDEVAMLLDYIEHCGDTLTGQKRVFYEKTKERDLAIVTLLLGT 126

Query: 203 GLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINND 260
           G+R S+     ++ +  +NN   + T+K G  + V       K L      K    +   
Sbjct: 127 GIRVSECVGLDIEDVDFKNNGIKV-TRKGGNEMVVYFGPEVEKAL------KRYLEVREG 179

Query: 261 KQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYG 312
              +   + ++++ A+  + GV    + V+K+S  I+     T H+L +TYG
Sbjct: 180 ITPLAGHEHALFYSAQRKRMGVQAVENMVKKYSRQITTTKKITPHKLRSTYG 231


>gi|300173433|ref|YP_003772599.1| tyrosine recombinase XerD [Leuconostoc gasicomitatum LMG 18811]
 gi|299887812|emb|CBL91780.1| tyrosine recombinase XerD [Leuconostoc gasicomitatum LMG 18811]
          Length = 298

 Score = 39.3 bits (90), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 53/237 (22%), Positives = 96/237 (40%), Gaps = 30/237 (12%)

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-- 188
           +S I+ +TS+R  F + +++  +  NP   V  PK+        T  ++    +  +E  
Sbjct: 71  NSVIRMVTSLRKFFGYLLQEGLILHNPMTDVRPPKKAEHLPSVLTVAEIDALLAVPTETT 130

Query: 189 --GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---IITV-ELPDGFM 242
             G + R   E L  +GLR S+     +  L   +  I+T   G    II + E+   ++
Sbjct: 131 PLGVRNRTLIEVLYATGLRVSELVNLKMSDLHLQLGLIQTIGKGDKERIIPIGEVAADWL 190

Query: 243 -------KLLAMTPIGKETFFINNDKQKMNATQFSIW--FKAKATKAGVNK--SAHGVRK 291
                  +LL +   G E+ F+  + +    ++  +W   K     AG+ K  S H +R 
Sbjct: 191 EKYFSNSRLLLLK--GNESPFVFLNDRGNQLSRQGVWKIIKKLVLLAGITKDVSPHTLRH 248

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
             AT   + GA    +    G   +   + YT  +          +R+S V D+  P
Sbjct: 249 SFATHILENGADLRIVQELLGHADISTTQIYTHIS---------KKRLSEVYDNFHP 296


>gi|58337257|ref|YP_193842.1| integrase-recombinase [Lactobacillus acidophilus NCFM]
 gi|227903842|ref|ZP_04021647.1| integrase-recombinase [Lactobacillus acidophilus ATCC 4796]
 gi|58254574|gb|AAV42811.1| integrase-recombinase [Lactobacillus acidophilus NCFM]
 gi|227868729|gb|EEJ76150.1| integrase-recombinase [Lactobacillus acidophilus ATCC 4796]
          Length = 301

 Score = 39.3 bits (90), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 44/201 (21%), Positives = 85/201 (42%), Gaps = 23/201 (11%)

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFWSEGSQPRLAFEFL 199
           ++W  RQ    +NP L ++ PK++ +     T+++    + Q  +    G + +   E L
Sbjct: 85  YQWLARQNIQKLNPMLEIDLPKKEHKLPIALTQDEVVNLLDQPNTKQKLGLRDKAILETL 144

Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT------IITVELP-----DGFMKLLAMT 248
             +G+R S+     +Q L  ++  ++    G       I +V L      +  ++   + 
Sbjct: 145 YATGMRVSELINLKLQDLHEDLGLVRVLGKGAKERLIPISSVALDWLKKYEKQVRDPLIL 204

Query: 249 PIGK--ETFFINNDKQKMNATQFSIW--FKAKATKAGVNKSA--HGVRKFSATISADAGA 302
            +GK  E  F+NN  +++  T+ +IW   K     AG+ K    H +R   AT   + GA
Sbjct: 205 NVGKDDEHIFLNNRGKQL--TRQAIWQMIKKYCQLAGIAKDVTPHTLRHTFATHLLENGA 262

Query: 303 TAHELMATYGWKTVDQAETYT 323
               +    G   +   + YT
Sbjct: 263 DLRVVQEILGHSDISTTQIYT 283


>gi|37527560|ref|NP_930904.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|37527568|ref|NP_930912.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|36786995|emb|CAE16069.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
 gi|36787003|emb|CAE16077.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 376

 Score = 39.3 bits (90), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 45/208 (21%), Positives = 76/208 (36%), Gaps = 20/208 (9%)

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-----PWTKEDMQQFKSFWSEGSQ 191
           L  ++V FKW  +Q  +  NP   +E P+ +    R       T++ + Q      +G +
Sbjct: 109 LEPLKVWFKWLTKQNLILANPAADIELPRLEKHLPRYILTIDETEQILAQPDLTTLQGIR 168

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL------- 244
            R   E L  +G+R  +  R  V  +     ++  ++        LP G   L       
Sbjct: 169 DRALMELLWSTGMRRGELTRLDVYSVDGKRKTVTIRQGKGNKDRVLPLGERALSWLQRYQ 228

Query: 245 ------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATI 296
                 L + P  K  F   +    + A   S    A     G+ K  + H  R   AT 
Sbjct: 229 QQVRPQLIVNPDVKALFVAMDGLDGLQANGISNLVTAYINAVGIEKKGACHLFRHAMATQ 288

Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324
             + GA    + A  G  +V+  + YT+
Sbjct: 289 MLENGADLRWIQAMLGHASVESTQVYTQ 316


>gi|238920128|ref|YP_002933643.1| site-specific recombinase, phage integrase family [Edwardsiella
           ictaluri 93-146]
 gi|238869697|gb|ACR69408.1| site-specific recombinase, phage integrase family [Edwardsiella
           ictaluri 93-146]
          Length = 336

 Score = 39.3 bits (90), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 50/104 (48%), Gaps = 1/104 (0%)

Query: 59  EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH 118
           E + + R   TTL  L+  + KSA +  LAV ++  +  Y  +I+   G      I  +H
Sbjct: 51  EALINERPDTTTLAGLVERFLKSADFFGLAVETQKDYHKYSQKILSVFGKMPPDAIRPEH 110

Query: 119 IRSGVESRK-HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV 161
           +R  ++ R   + + A +  + M  +++WA  + YV  NP   V
Sbjct: 111 VRRYMDKRGLRSHTQANREKSFMSRVYRWAYERGYVKGNPTKGV 154


>gi|170020889|ref|YP_001725843.1| lambda integrase [Escherichia coli ATCC 8739]
 gi|169755817|gb|ACA78516.1| lambda integrase [Escherichia coli ATCC 8739]
          Length = 356

 Score = 39.3 bits (90), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 62/295 (21%), Positives = 111/295 (37%), Gaps = 35/295 (11%)

Query: 25  FRKGHGRRIRLPYPHESTFIPAYMSALTGST--PKREYINSPRKKPTTLKWLISEYRKSA 82
           F  G  RRI +     +  I A +   +G    P    INS      TL   +  Y K  
Sbjct: 35  FGLGRDRRIAI-----TEAIQANIELFSGHKHKPLTARINS--DNSVTLHSWLDRYEKIL 87

Query: 83  HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSM 140
               +   + I++ S    I R   D     ITTK I + +     +   +SA    +++
Sbjct: 88  ASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAMLNGYIDEGKAASAKLIRSTL 147

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200
              F+ A+ + ++  NP  +    K +    R    E ++ +++  S     RLA E  +
Sbjct: 148 SDAFREAMAEGHITTNPVAATRAAKSEVRRSRLTADEYLKIYQAAESSPCWLRLAMELAV 207

Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV--------------ELPDGFMKLLA 246
            +G R  D C      + +    ++  KTG  I +              E  D   K+L 
Sbjct: 208 VTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTTLHVDALGISMKETLDKCKKIL- 266

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-----KSAHGVRKFSATI 296
               G ET   +  ++ +++   S +F      +G++      + H +R  SA +
Sbjct: 267 ----GGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPPTFHELRSLSARL 317


>gi|237654487|ref|YP_002890801.1| tyrosine recombinase XerC [Thauera sp. MZ1T]
 gi|237625734|gb|ACR02424.1| tyrosine recombinase XerC [Thauera sp. MZ1T]
          Length = 304

 Score = 39.3 bits (90), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 49/237 (20%), Positives = 89/237 (37%), Gaps = 36/237 (15%)

Query: 110 DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
           D R+   +    G + R     S  + L++ R  ++W VR+  V INP L +  PK  + 
Sbjct: 61  DIRRFVARLHGEGQQGR-----SIARHLSAWRGFYRWLVREHGVRINPALGIRPPKSPST 115

Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRL------AFEFLLYSGLRCSDSCRAGVQ---HLQNN 220
             R  + E   Q  +      Q  L       FE    SGLR ++     +     L   
Sbjct: 116 LPRVLSPE---QANALLDPEPQNLLEIRDIAMFELFYSSGLRVAELAGLDIDSGLDLAEG 172

Query: 221 IFSI--KTQKTGTIITVELPDGFMKLLAMTP----------IGKETFFINNDKQKMNATQ 268
           + ++  K Q+  T+     P G   + A+ P           G+   F+  D  +++   
Sbjct: 173 LVTVTGKRQRQRTV-----PVGGKAIAALRPWLEIRAGLAAAGERALFVTRDGHRLSTRG 227

Query: 269 FS--IWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
            +  +  +A+A   GV+   H +R   A+    +      +    G  ++   + YT
Sbjct: 228 IASRLGTRAQALGLGVHVHPHMLRHSFASHLLQSSGDLRAVQELLGHASIRSTQIYT 284


>gi|149372788|ref|ZP_01891809.1| site-specific recombinase [unidentified eubacterium SCB49]
 gi|149354485|gb|EDM43050.1| site-specific recombinase [unidentified eubacterium SCB49]
          Length = 299

 Score = 39.3 bits (90), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 50/212 (23%), Positives = 79/212 (37%), Gaps = 18/212 (8%)

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK--RKTEGIRPWTKEDM--QQFKSF 185
           PSS  + ++ ++  F + V +EY   NP   +E PK  RK        + D+   +    
Sbjct: 69  PSSQSRVISGLKGFFNYLVFEEYRTTNPLELMESPKIGRKLPDTLSEKEIDLLISEIDLS 128

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKL 244
             +G + R   E L   GLR S+     +  L      IK T K      V + D  +K 
Sbjct: 129 SPQGERNRAILETLYGCGLRVSEIINLKISDLFFEEGFIKVTGKGDKERFVPIGDNTIKF 188

Query: 245 L-----------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRK 291
           +            + P   +T F+N   + +         K    K G+  N S H  R 
Sbjct: 189 INIYRNEIRVHEPIKPEASDTLFLNRRGKGLTRAMIFTIIKRLLEKTGIQKNVSPHTFRH 248

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYT 323
             AT   + GA    +    G +++   E YT
Sbjct: 249 SFATHLLERGADLRAIQQMLGHESITTTEIYT 280


>gi|42519008|ref|NP_964938.1| integrase/recombinase XerD [Lactobacillus johnsonii NCC 533]
 gi|41583295|gb|AAS08904.1| integrase/recombinase XerD [Lactobacillus johnsonii NCC 533]
          Length = 296

 Score = 39.3 bits (90), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 46/226 (20%), Positives = 96/226 (42%), Gaps = 23/226 (10%)

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KSFW 186
           +S  + ++S+R  ++W +RQ+ +  +P + ++ PK +       ++E++ +      +  
Sbjct: 67  TSISRMISSLRKFYQWLLRQDIIERDPLVKIDSPKSERRLPTALSEEEVTKLLDAPDTNT 126

Query: 187 SEGSQPRLAFEFLLYSGLRCSD--SCRAGVQHLQNNIFSI--KTQKTGTIITVELP---- 238
             G + R   E L  +G+R S+  + R G  H +  I  +  K  K   +   E+     
Sbjct: 127 RLGIRDRAMLEVLYATGMRVSELINLRTGDIHSELKIIRVLGKGSKERLVPITEVALSWL 186

Query: 239 DGFMKLLAMTPIGK-----ETFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSA--HGV 289
           + + K +    + K     +  F+NN   ++  T+ ++W K K      G+ K+   H +
Sbjct: 187 EKYQKDVRENQVLKSGQFTDVIFLNNHGHQL--TRQAVWQKIKKYCQLIGITKNVTPHTL 244

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335
           R   AT   + GA    +    G   +   + YT    +  L + N
Sbjct: 245 RHTFATHLLENGADLRVVQEILGHSDITTTQIYTNLTQKHILEVYN 290


>gi|254000090|ref|YP_003052153.1| tyrosine recombinase XerD [Methylovorus sp. SIP3-4]
 gi|253986769|gb|ACT51626.1| tyrosine recombinase XerD [Methylovorus sp. SIP3-4]
          Length = 298

 Score = 39.3 bits (90), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 46/219 (21%), Positives = 84/219 (38%), Gaps = 27/219 (12%)

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK---------RKTEGIRPWTKEDMQ 180
           P S  + + S+R  +++ +R+  V+++P L ++ PK          + E +      D+ 
Sbjct: 70  PRSVSRLIASLRRFYRYGLREGQVSVDPTLLIDTPKLPRSLPKSLNEDEVVALLNAPDIA 129

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSD--SCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
           Q     + G + R   E L   GLR S+    R     L   +  +  + + T +     
Sbjct: 130 Q-----AIGLRDRAMLETLYACGLRVSELVGLRYTEVSLNEGVVRVTGKGSKTRLVPLGE 184

Query: 239 DGFMKLLAMTPIGK---------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287
           +    LL     G+         ++ F+    + M    F    K  A +AG++K  S H
Sbjct: 185 ESVDWLLRYVREGRPQILQQRVSDSLFVTQRGEAMTRQAFWYLIKRYALQAGIHKPLSPH 244

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            +R   AT   + GA    +    G   +   + YT  A
Sbjct: 245 VLRHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTHVA 283


>gi|189183843|ref|YP_001937628.1| putative integrase [Orientia tsutsugamushi str. Ikeda]
 gi|189180614|dbj|BAG40394.1| putative integrase [Orientia tsutsugamushi str. Ikeda]
          Length = 213

 Score = 39.3 bits (90), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 45/189 (23%), Positives = 78/189 (41%), Gaps = 8/189 (4%)

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL-LY 201
           +F  A++ E +  NP L +++ K +    R    E  +  +    E S     F  L LY
Sbjct: 1   MFNKAIKWELMDRNPTLRIDKHKMQARERRLSYDEMTKFLQVLCREASVLIRDFALLALY 60

Query: 202 SGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLL-AMTPIGKETFFIN 258
           +G R  +       ++     I+ I   K G    + L D  +++L A     K  + ++
Sbjct: 61  TGARKRNVLEMEWDNIDFVRKIWHIPKTKNGKAQNIPLTDEIIEILQARKLTSKSKWVLS 120

Query: 259 NDKQKMNATQ--FSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKT 315
            D+ K    +  +  W+K    KAG+ N   H +R+  A+  AD GA  + + A      
Sbjct: 121 TDRSKSVHLENPYRGWYKI-CKKAGIKNLRIHDLRRTFASCMADEGAGQYIISAALNHSD 179

Query: 316 VDQAETYTK 324
           +     YTK
Sbjct: 180 IKSTSIYTK 188


>gi|310827527|ref|YP_003959884.1| Site-specific recombinase XerD [Eubacterium limosum KIST612]
 gi|308739261|gb|ADO36921.1| Site-specific recombinase XerD [Eubacterium limosum KIST612]
          Length = 399

 Score = 39.3 bits (90), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 74/166 (44%), Gaps = 23/166 (13%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-FDYRKITTKHIRSG-------- 122
           KWL  EYRKSA    +A+ +   + +Y  +I RK    FD RK+    +++         
Sbjct: 76  KWL--EYRKSA----IAITT---YHAYKTRIERKIAPYFDERKMKLGSLKAAHVQEFYIH 126

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           +E+ K  P +   +   M     +AVR E +  NP   V RP  + + I P +  +  + 
Sbjct: 127 LENEKLKPCTIKCYHELMNTALNYAVRSELILANPLRLVYRPAVR-KAIEPHSCYNELEL 185

Query: 183 KSFW--SEGSQPRLAFEFLLYSGLRCSD--SCRAGVQHLQNNIFSI 224
           +  +  SEG+   +      + GLR S+    +      +NN+ +I
Sbjct: 186 EKLFKVSEGTLLEIPILLGAFYGLRRSEIIGLKWSAVDFENNLINI 231


>gi|116492336|ref|YP_804071.1| integrase [Pediococcus pentosaceus ATCC 25745]
 gi|116102486|gb|ABJ67629.1| Integrase [Pediococcus pentosaceus ATCC 25745]
          Length = 384

 Score = 39.3 bits (90), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 50/226 (22%), Positives = 86/226 (38%), Gaps = 39/226 (17%)

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP----WTKEDMQQFKSFWS--E 188
           ++L    ++F +A+R EYV  NPC  V  P+ + +        WT++++  F  + +   
Sbjct: 133 KWLNYASMIFDYALRAEYVGRNPCTLVTMPRVQEQAGEKLENFWTRDELNTFFDYVTPER 192

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------GTII--------- 233
             +    F  L YSG+R  +      + +     +++  KT      G +I         
Sbjct: 193 DVEQFTMFRVLAYSGIRKGELLALTWKDINFEDNTLRVNKTLTQGLGGKLIVQPPKSRAG 252

Query: 234 --TVELPDGFMKLLAM-TPIGKETFF-----INNDKQKM---NATQF------SIWFKAK 276
             T++L D  M+ L     + +ETF       NN  Q +   N   F      + W    
Sbjct: 253 RRTIDLDDSTMRYLRQWKGVQRETFLGMGFNTNNVDQLVFASNRNHFRSMNTPTKWLNKA 312

Query: 277 ATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
               G+   S HG R   A++   +G    E     G    D + T
Sbjct: 313 IKATGLKHISIHGFRHTHASLLYQSGVGLKETQQRLGHSRADSSVT 358


>gi|157157271|ref|YP_001461927.1| phage integrase family protein [Escherichia coli E24377A]
 gi|157079301|gb|ABV19009.1| phage integrase family [Escherichia coli E24377A]
          Length = 356

 Score = 39.3 bits (90), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 39/177 (22%), Positives = 70/177 (39%), Gaps = 4/177 (2%)

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
           INS      TL   +  Y K      +   + I++ S    I R   D     ITTK I 
Sbjct: 68  INS--DNSVTLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIA 125

Query: 121 SGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
           + +     +   +SA    +++   F+ A+ + ++  NP  +    K +    R    E 
Sbjct: 126 AMLNGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEY 185

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
           ++ +++  S     RLA E  + +G R  D C      + +    ++  KTG  I +
Sbjct: 186 LKIYQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAI 242


>gi|238923684|ref|YP_002937200.1| site-specific tyrosine recombinase [Eubacterium rectale ATCC 33656]
 gi|238875359|gb|ACR75066.1| site-specific tyrosine recombinase [Eubacterium rectale ATCC 33656]
          Length = 331

 Score = 39.3 bits (90), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 48/244 (19%), Positives = 94/244 (38%), Gaps = 27/244 (11%)

Query: 113 KITTKHIR----SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV-----ER 163
           KI+T  IR       + R  + S+     T +   F+WA  + Y+  NPC ++     ER
Sbjct: 93  KISTNDIRVYLYKNQQERNLSNSTLDTKRTIIHAFFEWAANEGYIGSNPCRNIKPIKYER 152

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN--- 220
           PKRK     P T  ++++ ++   +  + +   E    +G R ++  R  +  +      
Sbjct: 153 PKRK-----PLTGIELEKVRN-ACDNLKDKALLELFYSTGCRVTEMERLDISDIDFQTKE 206

Query: 221 --IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK--QKMNATQFSIWFKAK 276
             +F    +   + +  +        L      +E  F+++ K   ++         +  
Sbjct: 207 VLLFGKGDKHRISYLNAKAEIAIRNYLDSRNDNEEALFVSDRKPYGRLKKPAIEKRIRVL 266

Query: 277 ATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIK 334
             K+G+ +    H +R  +AT   D G    E+    G   +     Y   A+  R  +K
Sbjct: 267 GEKSGIGRRLYPHLIRHTTATDGLDRGMPVEEVQQILGHVNIATTMIY---AEVSRANVK 323

Query: 335 NSRR 338
           N+ R
Sbjct: 324 NNHR 327


>gi|311030547|ref|ZP_07708637.1| hypothetical protein Bm3-1_08391 [Bacillus sp. m3-13]
          Length = 280

 Score = 39.3 bits (90), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 46/243 (18%), Positives = 95/243 (39%), Gaps = 12/243 (4%)

Query: 99  FDQIIRKSGDFDYRKITTKHIRSG-VESRKHT-PSSAIQFLTSMRVLFKWAVRQEYVAIN 156
           ++ ++R  GD +   +TT  ++   ++   H  PSS    +  +R LFKWA  + ++  N
Sbjct: 31  YNMLLRYFGDIELNILTTDQLKEYLIKGSTHLKPSSLGHRVRCIRSLFKWANDEGFIKKN 90

Query: 157 PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216
           P   ++ PK      +  T+ +++  +    + S     FEF   +G R  +  +     
Sbjct: 91  PAAKLKEPKLGKRIPKFLTELEIEHLRE-SCQNSMENALFEFFYSTGCRIGEVVKLNRDD 149

Query: 217 LQNNIFSIKTQKTG-----TIITVELPDGFMKLLAMTPIGKETFFINND--KQKMNATQF 269
           +     S+     G                 + L       ++ FI     K++M+    
Sbjct: 150 INFASNSVIVHGKGDKEREVYFNTRCSLWLKRYLDERDDQDQSLFITERRPKRRMSIDLI 209

Query: 270 SIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
               K  ++ AG+ K+   H +R   AT   + GA    + +  G +  +    Y + + 
Sbjct: 210 RYIIKRISSGAGIKKNIHPHQLRHSYATHMINNGAPLEVIQSLLGHEKSETTRIYAQLSG 269

Query: 328 RIR 330
           ++R
Sbjct: 270 KLR 272


>gi|298253366|ref|ZP_06977158.1| site-specific recombinase XerD [Gardnerella vaginalis 5-1]
 gi|297532761|gb|EFH71647.1| site-specific recombinase XerD [Gardnerella vaginalis 5-1]
          Length = 322

 Score = 39.3 bits (90), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 52/245 (21%), Positives = 96/245 (39%), Gaps = 38/245 (15%)

Query: 113 KITTKHIRS--GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170
           ++TT  +RS    ESR H  SS  + + ++R  F W    EY++ NP   +  PK K   
Sbjct: 64  ELTTDDLRSWMADESRSHARSSLARKVVAVRGFFAWCQHVEYISGNPAEILMTPKIKN-- 121

Query: 171 IRPWTKEDMQQFKSFWSEGSQPRLA-----------------FEFLLYSGLRCSDSCRAG 213
           + P   ++ Q      +  S+  ++                  E L  +G+R  +     
Sbjct: 122 MLPSVLDEYQAESLMNNVDSKANVSTSCPKNQKAVGLRNAAILELLYATGIRVGELTSLN 181

Query: 214 VQHLQNNIFSIKTQKTGT---IITVELP-----------DGFMKLLAMTPIGKETFFINN 259
           +Q +  +  +IK    G    ++   +P           DG   LL  +   +E  F+  
Sbjct: 182 IQDINFSSHTIKVTGKGNKQRVVPFGVPAYKALSAWISKDGREILLRNSV--EEAVFLGT 239

Query: 260 DKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
             ++++          +A  A V + S H +R  +AT   + GA   E+    G  +++ 
Sbjct: 240 RGKRIDQRLVRQIVHDEAKSAHVPDISPHALRHSAATHMLNGGADLREVQELLGHSSLNT 299

Query: 319 AETYT 323
            + YT
Sbjct: 300 TQRYT 304


>gi|119503715|ref|ZP_01625797.1| site-specific tyrosine recombinase XerC [marine gamma
           proteobacterium HTCC2080]
 gi|119460223|gb|EAW41316.1| site-specific tyrosine recombinase XerC [marine gamma
           proteobacterium HTCC2080]
          Length = 304

 Score = 39.3 bits (90), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 67/153 (43%), Gaps = 15/153 (9%)

Query: 110 DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
           D R   ++  R G+     +P+S  + L+S+R L+++   ++    NP L V+ PKR   
Sbjct: 56  DVRNWVSQLHRQGL-----SPTSIQRALSSVRSLYRFLSERDVTLGNPALGVQAPKRPRN 110

Query: 170 GIRPWTKEDMQQFKSFWSEGSQP--RLAFEFLLY-SGLRCSDSCRAGVQHLQNNIFSIKT 226
             +    + +     +  E +     +A   LLY SGLR S+   A +  L+ N   I  
Sbjct: 111 LPKTLDADSVNHLFQWQPETTLDFRDMAIAELLYSSGLRLSELVSANINDLEFNERMITV 170

Query: 227 QKTGTIITVELPDG------FMKLLAMTPIGKE 253
              G   T  LP G        K L++ P+G E
Sbjct: 171 TGKGR-KTRTLPVGGPALTAVTKWLSLRPLGNE 202


>gi|307288234|ref|ZP_07568234.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0109]
 gi|306500832|gb|EFM70151.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0109]
          Length = 370

 Score = 39.3 bits (90), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 19/90 (21%), Positives = 47/90 (52%), Gaps = 1/90 (1%)

Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
           R+ ++++  + ++  + +  ++ L   AV+Q ++ +NPC  +++   K + +  WT +D 
Sbjct: 116 RTSLKNKGLSNNTVNKLMIQLKKLLDVAVKQGFLKVNPCTQLKKLPVKKKKMDYWTTKDF 175

Query: 180 QQFKSFWSEGSQP-RLAFEFLLYSGLRCSD 208
             F S +     P +L F+    +G+R  +
Sbjct: 176 NHFMSLFKPDEYPYKLFFKVAFSTGMRMGE 205


>gi|319788864|ref|YP_004090179.1| integrase family protein [Ruminococcus albus 7]
 gi|315450731|gb|ADU24293.1| integrase family protein [Ruminococcus albus 7]
          Length = 359

 Score = 39.3 bits (90), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 43/194 (22%), Positives = 89/194 (45%), Gaps = 12/194 (6%)

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVES 125
           K   ++WL      S +   + V+++ ++ + F++ I+   GD    +IT+K +   +++
Sbjct: 62  KALCMEWL------SVNSHRVKVSTQANYMTKFEKHILPYFGDKMCYEITSKTVYGFIQA 115

Query: 126 RKHTPSSA---IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           +     SA      L  ++ +FK+A ++EY  +NP  +V  PK      R  TK++ ++ 
Sbjct: 116 KLDEGLSAGYVSNILVLLKTVFKYA-QKEYHILNPFDNVIMPKSTKSETRLLTKKEQKKL 174

Query: 183 KSFW-SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241
           K +  S  +   L     +  GLR  + C    Q +     ++  ++T   I V+     
Sbjct: 175 KEYLKSNVNTATLGISLAISMGLRIGEICGLTWQDIDFKCRTLTVRRTVQRIRVKGEAKK 234

Query: 242 MKLLAMTPIGKETF 255
            K++ + P  K +F
Sbjct: 235 TKIVILPPKSKSSF 248


>gi|222032710|emb|CAP75449.1| integrase [Escherichia coli LF82]
 gi|312945501|gb|ADR26328.1| putative integrase [Escherichia coli O83:H1 str. NRG 857C]
          Length = 357

 Score = 39.3 bits (90), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 47/220 (21%), Positives = 88/220 (40%), Gaps = 16/220 (7%)

Query: 93  ISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQ 150
           + + S    I RK  D     I+TK + + + +   +   +SA    +++  +F+ A+ +
Sbjct: 98  LDYASKIRVIRRKLPDKPLTDISTKEVAAMLNTYVAEGKAASAKLIRSTLVDVFREAIAE 157

Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210
            +V  NP  +    K +    R    E +  + +        RLA +  + +G R  D C
Sbjct: 158 GHVETNPVTATRTAKSEVRRSRLTANEYVAIYHAAEPLPIWLRLAMDLAVVTGQRVGDLC 217

Query: 211 RAGVQHLQNNIFSIKTQKTGTIITVELP---DGFMKLLAMT------PIGKETFFINNDK 261
           R     + +N   I+  KTGT + + L    D     LA T        G ET   +   
Sbjct: 218 RMKWSDINDNHLHIEQGKTGTKLAIPLMLTIDALNISLADTLQKCREASGSETIIASTHH 277

Query: 262 QKMNATQFSIWFKAKATKAGVN-----KSAHGVRKFSATI 296
           + ++    S +F      +G++      + H +R  SA +
Sbjct: 278 EPLSPKTVSKYFTKARNVSGLSFDGDPPTFHELRSLSARL 317


>gi|253990782|ref|YP_003042138.1| site-specific tyrosine recombinase XerC [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|253990786|ref|YP_003042142.1| site-specific tyrosine recombinase XerC [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|211639116|emb|CAR67728.1| Similar to integrase/recombinase [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|211639122|emb|CAR67734.1| Phage integrase [Photorhabdus asymbiotica subsp. asymbiotica ATCC
           43949]
 gi|253782232|emb|CAQ85396.1| similar to phage integrase/recombinase [Photorhabdus asymbiotica]
 gi|253782236|emb|CAQ85400.1| similar to phage integrase/recombinase [Photorhabdus asymbiotica]
          Length = 376

 Score = 39.3 bits (90), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 45/208 (21%), Positives = 77/208 (37%), Gaps = 20/208 (9%)

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-----PWTKEDMQQFKSFWSEGSQ 191
           L  ++V FKW  +Q  +  NP   +E P+ +    R       T++ + Q      +G +
Sbjct: 109 LEPLKVWFKWLTKQNLILANPAADLELPRLEKHLPRYILTIDETEQILAQPDLTTLQGVR 168

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL------- 244
            R   E L  +G+R  +  R  V  +  +  ++  ++        LP G   L       
Sbjct: 169 DRALMELLWSTGMRRGELTRLDVYSVDGSRKTVTIRQGKGNKDRVLPLGERALSWLQRYQ 228

Query: 245 ------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATI 296
                 L + P  K  F   +    + A   S    A     G+ K  + H  R   AT 
Sbjct: 229 QQVRPQLIVNPDVKALFVAMDGLDGLQANGISNLVTAYINAVGIEKKGACHLFRHAMATQ 288

Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324
             + GA    + A  G  +V+  + YT+
Sbjct: 289 MLENGADLRWIQAMLGHASVESTQVYTQ 316


>gi|228915207|ref|ZP_04078802.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|228844438|gb|EEM89494.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
          Length = 369

 Score = 39.3 bits (90), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 30/135 (22%), Positives = 63/135 (46%), Gaps = 10/135 (7%)

Query: 83  HW---GSLAVNSR--ISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF 136
           HW    S+++ S   + + +  +Q +I   G     K+   HI+   ++  +   +    
Sbjct: 71  HWLEIKSMSIESSTFVVYRACINQHVIPSIGMITLHKLNVMHIQKCYKTAINKGIANNSI 130

Query: 137 LTSMRVL---FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
           L   R+L      AV+Q  +  NP    E PK++   I+ WT+E++++F    S+ S+  
Sbjct: 131 LLMHRILKSALNLAVKQNIITRNPSAFAEIPKKERTSIQTWTEEEVKKF-LLHSQESRYH 189

Query: 194 LAFEFLLYSGLRCSD 208
           + +   + +G+R  +
Sbjct: 190 IGYLLAITTGMRMGE 204


>gi|213971953|ref|ZP_03400051.1| prophage PSPPH06, site-specific recombinase, phage integrase family
           [Pseudomonas syringae pv. tomato T1]
 gi|301386017|ref|ZP_07234435.1| prophage PSPPH06, site-specific recombinase phage integrase family
           protein [Pseudomonas syringae pv. tomato Max13]
 gi|302058854|ref|ZP_07250395.1| prophage PSPPH06, site-specific recombinase phage integrase family
           protein [Pseudomonas syringae pv. tomato K40]
 gi|213923268|gb|EEB56865.1| prophage PSPPH06, site-specific recombinase, phage integrase family
           [Pseudomonas syringae pv. tomato T1]
          Length = 382

 Score = 39.3 bits (90), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 26/109 (23%), Positives = 50/109 (45%), Gaps = 9/109 (8%)

Query: 70  TLKWLISEYRKSAHWGSLA-------VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122
           +L++L  E+ +S  +  LA         SR    +Y  ++ +  G+   +K T   ++  
Sbjct: 76  SLQYLCDEFHRSQQFKELAKKTQDDYCYSRDVLVAYPTKLDKPLGELAVKKFTPAMVQRI 135

Query: 123 VE--SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
           ++  +   TPS A   L  +R L +W   + +V  NP   +E PK + +
Sbjct: 136 IDKIAEAGTPSKAAHALRYLRRLMQWGRNRGFVTDNPAKGIEAPKERKQ 184


>gi|108760213|ref|YP_631219.1| phage integrase family site specific recombinase [Myxococcus
           xanthus DK 1622]
 gi|34222772|sp|P59818|XERC_MYXXA RecName: Full=Tyrosine recombinase xerC
 gi|122981099|sp|Q1D804|XERC_MYXXD RecName: Full=Tyrosine recombinase xerC
 gi|27804888|gb|AAO22922.1| integrase/recombinase [Myxococcus xanthus]
 gi|108464093|gb|ABF89278.1| site-specific recombinase, phage integrase family [Myxococcus
           xanthus DK 1622]
          Length = 300

 Score = 39.3 bits (90), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 8/95 (8%)

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK--RKTEGIRP----WT 175
           G  S  H P+S  + L S++  +K+ VRQ+ +  +P   V+ PK  +    + P    + 
Sbjct: 61  GTLSTDHAPASRARRLASIKSFYKYLVRQKLLPASPAKLVKSPKLPKTLPKVLPVEEVFA 120

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210
             DM   K+    G + R   E L   GLR S+ C
Sbjct: 121 ILDMPDVKTVL--GLRDRAILELLYGGGLRISELC 153


>gi|149920280|ref|ZP_01908751.1| integrase/recombinase XerD [Plesiocystis pacifica SIR-1]
 gi|149818867|gb|EDM78307.1| integrase/recombinase XerD [Plesiocystis pacifica SIR-1]
          Length = 302

 Score = 38.9 bits (89), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 51/251 (20%), Positives = 96/251 (38%), Gaps = 38/251 (15%)

Query: 110 DYRKITTKHIRSGVE-SRKHTPSSAIQFLTSM-----------------RVLFKWAVRQE 151
           D R++      +GVE + + +P++ + FL S+                 R LF+W   ++
Sbjct: 35  DLRRLLDALSGAGVERASQVSPAALLGFLRSLAEAGLSARSQARRWVAVRGLFRWLRSEQ 94

Query: 152 YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCS 207
            V ++P   +  PK   +     ++E++ +  +        G +     EF+  +G R S
Sbjct: 95  LVEVDPTQGIALPKAVNKLPELLSREEVVRLIAAPGVDTPLGLRDTALLEFMYATGCRVS 154

Query: 208 DSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPD-GFMKLLAMTPIGKETF--------- 255
           ++C   +   HL   +  + T K      V L D   + LLA    G+            
Sbjct: 155 EACDLELSSLHLDQGLV-VLTGKGSKQRMVPLGDCALVALLAWLEEGRPELVARAPREAH 213

Query: 256 -FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYG 312
            F+N    +++        +  A  AG+ +  S H +R   AT   + GA    +    G
Sbjct: 214 VFVNKRGSRLSRQGCFFRLRQHAVSAGITRDISPHKLRHSFATHLIEGGADLRAVQTLLG 273

Query: 313 WKTVDQAETYT 323
              +   + YT
Sbjct: 274 HADISTTQVYT 284


>gi|82701881|ref|YP_411447.1| tyrosine recombinase XerD [Nitrosospira multiformis ATCC 25196]
 gi|82409946|gb|ABB74055.1| Tyrosine recombinase XerD [Nitrosospira multiformis ATCC 25196]
          Length = 303

 Score = 38.9 bits (89), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 60/260 (23%), Positives = 97/260 (37%), Gaps = 29/260 (11%)

Query: 92  RISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESRKHTPSSAIQFLTSMRVLFKW 146
           R   E + D   R+  D D   +T  H       +G  S     S+  + L+S++  +++
Sbjct: 33  RSDLEQFGDWFARQKPD-DSSFLTVTHSDLLGFMTGRFSAGMKASTTSRELSSLKRFYRF 91

Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFEFLLYS 202
            +RQ  +  +P L+++ P+         T+ D++         +  G + R   E L  S
Sbjct: 92  LLRQGKINADPTLNIDTPRLPRNLPVSLTEADVEALLGAPDVTFPLGLRDRAMLEVLYAS 151

Query: 203 GLRCSD--SCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE------- 253
           GLR S+  S  +G   L   +  I  +     +T   P G   L  M    KE       
Sbjct: 152 GLRVSELVSLESGQISLDMGVVRIMGKGGKERLT---PLGEEALEWMVRYIKEIRPGLLD 208

Query: 254 -----TFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHE 306
                  F+      M    F    K  A +AG+ K  S HG+R   AT   + GA    
Sbjct: 209 GKSSNALFVTYRGAGMTRQAFWYLIKRYARQAGITKPLSPHGLRHAFATHLLNHGADLRV 268

Query: 307 LMATYGWKTVDQAETYTKGA 326
           +    G   +   + YT  A
Sbjct: 269 VQLLLGHADISTTQIYTHVA 288


>gi|293372135|ref|ZP_06618526.1| tyrosine recombinase XerC [Bacteroides ovatus SD CMC 3f]
 gi|292632927|gb|EFF51514.1| tyrosine recombinase XerC [Bacteroides ovatus SD CMC 3f]
          Length = 293

 Score = 38.9 bits (89), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 55/241 (22%), Positives = 93/241 (38%), Gaps = 29/241 (12%)

Query: 107 GDFDYRKITTKHIRSGVES---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163
           G FD  ++  + IR  + S   + +T +S  + L+S+R  +K+ +RQ    I+P   ++ 
Sbjct: 40  GKFDPLEVEAELIREWIVSLMDKGYTSTSVNRKLSSLRTFYKYLIRQGETTIDPLRKIKG 99

Query: 164 PKRK---------TEGIRPWTKEDM-QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG 213
           PK K          E  R     D  Q FK     G + RL  E    +G+R S+     
Sbjct: 100 PKNKKPLPVFLKENEMNRLLDDTDFGQGFK-----GCRDRLVIEVFYATGMRLSELIGLD 154

Query: 214 VQHLQNNIFSIK-TQKTGTIITVELPDGFMKLL--------AMTPIGKETFFINNDKQKM 264
            + +  +   +K T K      +   D   +L+           P   E FFI  + +++
Sbjct: 155 DKDVDFSASLLKVTGKRNKQRLIPFGDELQELMLEYINVRNETIPERSEAFFIRENGERL 214

Query: 265 NATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
                    K   +K      KS H +R   AT   +  A    +    G +++   E Y
Sbjct: 215 YKNLVYNLVKRNLSKVVTLKKKSPHVLRHTFATTMLNNEAELGAVKELLGHESITTTEIY 274

Query: 323 T 323
           T
Sbjct: 275 T 275


>gi|229150814|ref|ZP_04279026.1| DNA integration/recombination/invertion protein [Bacillus cereus
           m1550]
 gi|228632603|gb|EEK89220.1| DNA integration/recombination/invertion protein [Bacillus cereus
           m1550]
          Length = 369

 Score = 38.9 bits (89), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 27/118 (22%), Positives = 58/118 (49%), Gaps = 5/118 (4%)

Query: 95  FESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL---FKWAVRQ 150
           + ++ +Q +I   G     K+   HI+   ++      S+   L   R+L      AV+Q
Sbjct: 88  YRAFINQHVIPSIGMVALHKLNVMHIQKCYKNAIDKGISSNSILLMHRILKSALNLAVKQ 147

Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD 208
             ++ NP    E PK++   I+ WT+E++++F +  S+ S+  + +   + +G+R  +
Sbjct: 148 NIMSRNPADFAEIPKKEKTPIQTWTEEEVKKFLAH-SQESRYHIGYLLAITTGMRLGE 204


>gi|323139352|ref|ZP_08074404.1| integrase family protein [Methylocystis sp. ATCC 49242]
 gi|322395418|gb|EFX97967.1| integrase family protein [Methylocystis sp. ATCC 49242]
          Length = 317

 Score = 38.9 bits (89), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 55/127 (43%), Gaps = 10/127 (7%)

Query: 114 ITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR----- 166
           I   HI + VE+  R H+  +A Q L ++R+LF W V  + V  NP  SV  PK      
Sbjct: 65  IEPLHIGAYVEAMTRSHSAPTAKQRLAAIRMLFDWLVTGQIVPTNPAASVRGPKHVVKVG 124

Query: 167 KTEGIRPW-TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFS 223
           KT  + P   +  +         G + R     ++YS  R   +    V+  ++QN    
Sbjct: 125 KTPVLDPAEARALLDSIDVTAPVGLRDRALIGLMIYSFARVGAALAMKVEDVYVQNRRLW 184

Query: 224 IKTQKTG 230
           ++  + G
Sbjct: 185 VRLHEKG 191


>gi|294340803|emb|CAZ89198.1| putative XerD or XerC integrase [Thiomonas sp. 3As]
          Length = 340

 Score = 38.9 bits (89), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 28/109 (25%), Positives = 51/109 (46%), Gaps = 9/109 (8%)

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGS-LAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119
           +NSP     TL+ L ++Y   A     LA  + +++    D +++++       I + HI
Sbjct: 13  LNSP-----TLRQLAADYLAHAQTERRLAEGTLVNYRRDLDDLLQRAEALGAAPIESLHI 67

Query: 120 R---SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165
           R   + + +   +P +    L++ R  F+W  R  +VA NP   V  PK
Sbjct: 68  RRWAAQLHAGGMSPRAIAARLSAWRSFFRWMGRLGFVAANPVQDVRAPK 116


>gi|229825965|ref|ZP_04452034.1| hypothetical protein GCWU000182_01329 [Abiotrophia defectiva ATCC
           49176]
 gi|229789707|gb|EEP25821.1| hypothetical protein GCWU000182_01329 [Abiotrophia defectiva ATCC
           49176]
          Length = 366

 Score = 38.9 bits (89), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 1/88 (1%)

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTE-GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201
           +F  AV+   + +NPC SV++  R  +  I  WT ++ Q F   +   S   L FE L +
Sbjct: 137 IFIHAVKIYSLRVNPCKSVKKMGRSDDRSITFWTFDEYQHFIRTYDTTSMHYLMFEILFW 196

Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKTQKT 229
           +G+R  +     +  +     SI   KT
Sbjct: 197 TGMREGELLALTMNDIDFTQMSIHISKT 224


>gi|229181836|ref|ZP_04309144.1| DNA integration/recombination/invertion protein [Bacillus cereus
           172560W]
 gi|228601634|gb|EEK59147.1| DNA integration/recombination/invertion protein [Bacillus cereus
           172560W]
          Length = 369

 Score = 38.9 bits (89), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 27/118 (22%), Positives = 57/118 (48%), Gaps = 5/118 (4%)

Query: 95  FESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL---FKWAVRQ 150
           + ++ +Q +I   G     K+   HI+   ++      +    L   R+L      AV+Q
Sbjct: 88  YRAFINQHVIPSIGMVALHKLNVMHIQKCYKTAIDKGITNNSILLMHRILKSALNLAVKQ 147

Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD 208
             ++ NP    E PK++   I+ WT+E++++F S  S+ S+  + +   + +G+R  +
Sbjct: 148 NIISRNPADFAEIPKKEKTPIQTWTEEEVKKFLSH-SQESRYHIGYLLAITTGMRLGE 204


>gi|320646833|gb|EFX15703.1| Site-specific recombinase, phage integrase family protein
           [Escherichia coli O157:H- str. 493-89]
 gi|320652110|gb|EFX20447.1| Site-specific recombinase, phage integrase family protein
           [Escherichia coli O157:H- str. H 2687]
          Length = 229

 Score = 38.9 bits (89), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 44/197 (22%), Positives = 78/197 (39%), Gaps = 6/197 (3%)

Query: 36  PYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISF 95
           P   ES  + A    L     K E   + R +  T   L  ++  SA++  L+  ++  +
Sbjct: 28  PTSRESVTLTAIEDGLAALWKKYEETVNHRDRAMTFGRLWEKFLASAYYSELSPRTQKDY 87

Query: 96  ESYFDQIIRKSGDFDYRKITTKHIRSGVESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVA 154
             +  ++    G      +  +HIR  ++ R + + + A    +SM  ++ W   + YV 
Sbjct: 88  LQHQKKLPAVFGKVLADSVKPEHIRRYMDKRGEQSKTQANHEKSSMSRVYSWGYERGYVK 147

Query: 155 INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR-LAFEFLLYSGLRCSDSCRAG 213
            NPC  V + K K        KE    +++  S    P  +A E       R SD     
Sbjct: 148 ANPCAGVSKFKAKNRERYVTDKE----YQAVLSVAPLPVFIAMEIAYLCAARVSDVLSLK 203

Query: 214 VQHLQNNIFSIKTQKTG 230
            + + N+   I+  KTG
Sbjct: 204 WEQIGNDGIFIQQGKTG 220


>gi|251781708|ref|YP_002996010.1| site-specific recombinase, phage integrase family [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
 gi|242390337|dbj|BAH80796.1| site-specific recombinase, phage integrase family [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
          Length = 384

 Score = 38.9 bits (89), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 27/102 (26%), Positives = 47/102 (46%), Gaps = 3/102 (2%)

Query: 107 GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
           GD    KI+    ++ +  +     +  Q  +  R +F +A++ + +  NP   +  PKR
Sbjct: 106 GDLPISKISPLDCQNFITEKAKVFKNIKQIKSYTRKVFDFAIKMKLLKHNPMTEIIMPKR 165

Query: 167 KTEGIRP-WTKEDMQQFKS--FWSEGSQPRLAFEFLLYSGLR 205
           K   I   WT +++Q+F +     E  +    F  L YSGLR
Sbjct: 166 KKTRIENYWTVQELQEFLAIVLQEEPYKHYALFRLLAYSGLR 207


>gi|327402450|ref|YP_004343288.1| integrase family protein [Fluviicola taffensis DSM 16823]
 gi|327317958|gb|AEA42450.1| integrase family protein [Fluviicola taffensis DSM 16823]
          Length = 404

 Score = 38.9 bits (89), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 35/139 (25%), Positives = 70/139 (50%), Gaps = 19/139 (13%)

Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAIN--PCLSVERPKRKTEGI-RPW 174
           ++R+ + +  +T  + ++F+   R +F  A +Q+ + ++  P L   + K KTE + R +
Sbjct: 161 YLRTKLNNSTNTIHTNLKFI---RTVFNKAFQQDIIELSSSPFL---KFKMKTEKVQRDY 214

Query: 175 TKEDMQQFKSFWSEGSQPRLAFE-------FLLYSG-LRCSDSCRAGVQHLQNNIFSIKT 226
             ED  + K F    +Q  L  E       F  YSG LR SD  +    H  ++  +   
Sbjct: 215 LTED--ELKIFAEVDTQGNLKLELHQDMFVFAAYSGGLRISDILQLQWIHFDDSHINFTI 272

Query: 227 QKTGTIITVELPDGFMKLL 245
           +KTG+ I++++P+  + ++
Sbjct: 273 KKTGSQISIKIPNIALNII 291


>gi|192360546|ref|YP_001981926.1| tyrosine recombinase XerD [Cellvibrio japonicus Ueda107]
 gi|190686711|gb|ACE84389.1| tyrosine recombinase XerD [Cellvibrio japonicus Ueda107]
          Length = 299

 Score = 38.9 bits (89), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 52/219 (23%), Positives = 93/219 (42%), Gaps = 22/219 (10%)

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS---- 187
           S  +FL+ +R  ++  +R+ ++  NP   VE PK      +  ++ D++   S       
Sbjct: 73  STARFLSCLRGFYRLQIREGHLHDNPLALVENPKLSRSLPKSLSESDVENLLSAPDVDDP 132

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSI--KTQKTGTIITVELPDGFMK 243
            G + +   E L   GLR S+     +   +L+ N+  +  K  K   +   E    +++
Sbjct: 133 VGLRDKTMLEVLYACGLRVSELVGLTMSQVNLRQNVVRVMGKGSKERLVPMGEEAAAWLQ 192

Query: 244 --LLAMTPI-----GKETFFINNDKQKMNATQFSIWFKAK--ATKAGVNK--SAHGVRKF 292
             L    P+       E  F ++  Q M  T+ + W++ K  A  AG+NK  S H +R  
Sbjct: 193 RYLREARPVLLNNFPDEVVFPSSRGQPM--TRQTFWYRIKHWAQVAGINKPLSPHTLRHA 250

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            AT   + GA    +    G   +   + YT  A R+R+
Sbjct: 251 FATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVA-RLRM 288


>gi|324113623|gb|EGC07598.1| phage integrase [Escherichia fergusonii B253]
          Length = 231

 Score = 38.9 bits (89), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 25/107 (23%), Positives = 48/107 (44%)

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           +SA    +++  +F+ A+ + +VA NP  +    K +    R    E +  + +     +
Sbjct: 12  ASAKLIRSTLVDVFREAIAEGHVATNPATATRTAKSEVRRSRLTANEYVAIYHAAEPLPT 71

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237
             RLA +  + +G R  D CR     + +N   I+  KTG  + + L
Sbjct: 72  WLRLAMDLAVVTGQRVGDLCRMKWSDINDNHLHIEQSKTGAKLAIPL 118


>gi|229073696|ref|ZP_04206809.1| DNA integration/recombination/invertion protein [Bacillus cereus
           F65185]
 gi|228709405|gb|EEL61466.1| DNA integration/recombination/invertion protein [Bacillus cereus
           F65185]
          Length = 369

 Score = 38.9 bits (89), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 25/120 (20%), Positives = 57/120 (47%), Gaps = 5/120 (4%)

Query: 93  ISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL---FKWAV 148
           + + ++ +Q +I   G     K+   HI+   ++      +    L   R+L      AV
Sbjct: 86  VGYRAFINQHVIPSIGMVTLHKLNVMHIQKCYKTAIDKGIANNSILLMHRILKSALNLAV 145

Query: 149 RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD 208
           +Q  ++ NP    E PK++   I+ WT++++++F    S+ S+  + +   + +G+R  +
Sbjct: 146 KQNIISRNPAAFAEIPKKERTSIQTWTEDEVKKF-LLHSQESRYHIGYLLAITTGMRMGE 204


>gi|300770362|ref|ZP_07080241.1| phage integrase family site-specific recombinase [Sphingobacterium
           spiritivorum ATCC 33861]
 gi|300762838|gb|EFK59655.1| phage integrase family site-specific recombinase [Sphingobacterium
           spiritivorum ATCC 33861]
          Length = 419

 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 85/368 (23%), Positives = 157/368 (42%), Gaps = 54/368 (14%)

Query: 1   MTPSLRLPPFV-TKERT---RHGKIIYYFRKGH---GRRIRLPYPHESTFIPAYMSALTG 53
           ++  + +PP    KER    ++ KI  Y R  +     R+R+    ++  + A  S  T 
Sbjct: 37  LSLQISVPPLYWDKERECIKKNNKIKGYVRLNNFIDNERVRM----KNQLVEAEQSDRTL 92

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR--KSGDFDY 111
           S+ K + I    ++P   ++   +Y+K+    S +V     +++  +++ R  KS    +
Sbjct: 93  SSKKIKDIIKGEEEPDFFEF-AEQYQKTIE-SSESVRLYNQYKAILNKLERFNKSRQLKF 150

Query: 112 RKIT-------TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYV--AINPCLSVE 162
            +IT       ++H+ +  ++R +T S+ ++ +   R L+  A  +E V    NP   ++
Sbjct: 151 SEITVSYLKRFSEHLATECKNRTNTISTNLKVI---RKLYNLATLEEVVPEERNPFKKLK 207

Query: 163 RPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFEFLLYSG-LRCSDSCRAGVQHL 217
               KT  I   TKED+ + +        +    R  F F +Y+G LR SD      + +
Sbjct: 208 LEWEKT-NIGYLTKEDIDKIRHVELDPMGKDYHIRNMFVFAMYTGGLRFSDLLMLRWEDV 266

Query: 218 QNNI-FSIKTQKTGTIITVELPDGFMKLLAM----TPIGKETF---FINNDKQKMNATQF 269
           Q++    + TQKT T +TV+L +  + +L++    T      F   F++NDK   N    
Sbjct: 267 QDDERVKVYTQKTKTNLTVKLTNVSLAILSIYRPSTYTNASGFIFPFLDNDKNYSNPKYL 326

Query: 270 -----------SIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTV 316
                      +   +    K+G+NK    H  R   AT   + G     +    G  +V
Sbjct: 327 YRRISSINAVANTRLREIGKKSGINKHLHFHMSRHTFATRGLEIGMPLTHISKLMGHSSV 386

Query: 317 DQAETYTK 324
              E Y K
Sbjct: 387 AMTENYAK 394


>gi|260583822|ref|ZP_05851570.1| integrase/recombinase XerC [Granulicatella elegans ATCC 700633]
 gi|260158448|gb|EEW93516.1| integrase/recombinase XerC [Granulicatella elegans ATCC 700633]
          Length = 294

 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 24/100 (24%), Positives = 52/100 (52%), Gaps = 6/100 (6%)

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           +  +++  SS  +FL+S+R  +++ +  ++V  NP  S+   K +      + +++M++F
Sbjct: 41  LHQQQYNRSSISRFLSSLRSFYQYLLEHDFVEENPFASISYKKGQKRLPEFFYEDEMEKF 100

Query: 183 KSFWSEGSQP-----RLAFEFLLYSGLRCSDSCRAGVQHL 217
            +   +G+QP     R   E L  +G+R S+     +Q L
Sbjct: 101 IA-SIDGNQPLDQRNRALIEVLYATGMRVSELTELTLQQL 139


>gi|257885090|ref|ZP_05664743.1| integrase [Enterococcus faecium 1,231,501]
 gi|257820942|gb|EEV48076.1| integrase [Enterococcus faecium 1,231,501]
          Length = 353

 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 68/147 (46%), Gaps = 16/147 (10%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE--SRKHTP 130
           WL S Y+K+    S +  ++I F  +   I  K G+    KI T + +  V   S K T 
Sbjct: 76  WLES-YKKTVKESSYS-RTKIIFNKH---IYPKFGNIKLSKINTAYCQKVVNDWSEKGTS 130

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLS--VERPKRKTE-GIRPWTKEDMQQFKSFWS 187
                F+  M  +FK+A+     + NP L+  + +P+ KTE  ++ +TKE ++ F +  S
Sbjct: 131 KQYPLFINYMNKVFKYAINIGLTSDNPTLNLLIPKPQIKTEKKLKLYTKEQLELFLNEVS 190

Query: 188 EGSQPRL------AFEFLLYSGLRCSD 208
           +   P         F  L +SG R  +
Sbjct: 191 QEQNPYFKNRDYTLFRLLAFSGCRIGE 217


>gi|317057341|ref|YP_004105808.1| integrase family protein [Ruminococcus albus 7]
 gi|315449610|gb|ADU23174.1| integrase family protein [Ruminococcus albus 7]
          Length = 372

 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 61/279 (21%), Positives = 100/279 (35%), Gaps = 58/279 (20%)

Query: 100 DQIIRKSGDFDYRKITTKHI--------RSGVESRKHTPSSA------IQFLTSMRVLFK 145
           D++I   G     KIT + I        + G   R   P S       + F++S   +F+
Sbjct: 73  DRVIPALGHLRIDKITARDIQKFINSLAKPGANKRNGKPLSQKTMRHHLSFISS---IFE 129

Query: 146 WAVRQEYVAINPCLSVERPKRKTEG---IRP----WTKEDMQQFKSFWSEGSQP-RLAFE 197
           +A+R + V  NPC  V  PK    G    +P    +TKE  ++F     E     ++ F 
Sbjct: 130 YAIRLDMVNTNPCSKVMIPKIDASGKAYKKPEKHIYTKEQAREFMKILREAPMKYKVFFT 189

Query: 198 FLLYSGLRCSDSC------------RAGVQHLQN-----NIFSIKTQKTGTIITVELPDG 240
             +Y+G R  +                 + H  N      I+S  T+   +   V+LP  
Sbjct: 190 LAIYTGCRRGELLGIEWKNIDFERGTVKIDHTSNYTADKGIYSDATKTERSTRMVDLPPA 249

Query: 241 FMKLLAMTPIGKETF--------------FINNDKQKMNATQFSIWFKAKATKAGVN-KS 285
            + LL      ++++              F   D Q M+      W   +  +       
Sbjct: 250 VIGLLKAYKHDQDSYKANLGDEWQEHDRLFTKWDGQPMHPNTPYTWLMRECERRNFPFYG 309

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKT-VDQAETYT 323
            H  R F A++  +AG     + A  G  T V    TY+
Sbjct: 310 LHSFRHFFASVEIEAGVDPTTVAAMLGHSTPVTTMSTYS 348


>gi|218553295|ref|YP_002386208.1| Integrase from phage [Escherichia coli IAI1]
 gi|218360063|emb|CAQ97610.1| Integrase from phage [Escherichia coli IAI1]
          Length = 356

 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 48/215 (22%), Positives = 83/215 (38%), Gaps = 11/215 (5%)

Query: 25  FRKGHGRRIRLPYPHESTFIPAYMSALTGST--PKREYINSPRKKPTTLKWLISEYRKSA 82
           F  G  RRI +     +  I A +   +G    P    INS      TL   +  Y K  
Sbjct: 35  FGLGRDRRIAI-----TEAIQANIELFSGHKHKPLTARINS--DNSVTLHSWLDRYEKIL 87

Query: 83  HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSM 140
               +   + I++ S    I R   D     ITTK I + +     +   +SA    +++
Sbjct: 88  ASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAMLNGYIDEGKAASAKLIRSTL 147

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200
              F+ A+ + ++  NP  +    K +    R    E ++ +++  S     RLA E  +
Sbjct: 148 SDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEYLKIYQAAESLPCWLRLAMELAV 207

Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
            +G R  D C      + +    ++  KTG  I +
Sbjct: 208 VTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAI 242


>gi|158339285|ref|YP_001520462.1| phage integrase [Acaryochloris marina MBIC11017]
 gi|158309526|gb|ABW31143.1| phage integrase [Acaryochloris marina MBIC11017]
          Length = 335

 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 39/187 (20%), Positives = 82/187 (43%), Gaps = 17/187 (9%)

Query: 64  PRKKPTTLKWL-ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122
           P+  P  L+W+ + E+ +S     ++ N+R ++E    Q +  + D  + +IT + +   
Sbjct: 29  PKTTPADLRWMRVEEFMRSR---EISSNTRKAYERDLKQFMDWT-DKGWHEITARDLDRY 84

Query: 123 VESRKHTPSSAIQF---------LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
               K  P+   Q          L +++  FKW   ++Y+  +P L +E+ K      + 
Sbjct: 85  KNYLKVEPNQRGQLRKNATINRNLAALQGFFKWLTVRDYITKDPTLLLEKLKSDPVLPQE 144

Query: 174 WTKEDMQQ-FKSFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
           ++++++   +++    G       A   L+  GLR S+  R  V        +I+  K  
Sbjct: 145 FSQDEVDNLYQAICDRGFHAFRDRALLHLIDHGLRASEIHRLNVGDYDGQRITIRVAKAD 204

Query: 231 TIITVEL 237
           ++ TV L
Sbjct: 205 SVGTVPL 211


>gi|127511928|ref|YP_001093125.1| phage integrase family protein [Shewanella loihica PV-4]
 gi|126637223|gb|ABO22866.1| phage integrase family protein [Shewanella loihica PV-4]
          Length = 324

 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 76/185 (41%), Gaps = 19/185 (10%)

Query: 107 GDFDYRKITTKHIRSGVESR----KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162
           GD    ++T +HI   ++ R    K   +  I  L+ M    K+A+R   +  NPC SV 
Sbjct: 93  GDIRVDELTPRHIYQYMDVRGKKGKTQTNREIAMLSHM---LKYAIRWGLIDHNPCRSVM 149

Query: 163 RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA--FEFLLYSGLRCSDSCRAGVQHLQNN 220
           R K   E  R    ED +++K+F  + + P +A   +F L +GLR SD  +     L+ +
Sbjct: 150 RFK---ETPRDRYIED-KEYKAF-RDFAGPLIAAYMDFKLLTGLRKSDILKLRRDALKED 204

Query: 221 IFSIKTQKTGTIITVELPDGFMKLLAMT-----PIGKETFFINNDKQKMNATQFSIWFKA 275
              +   KT   I +   D     +        PI     F     Q      FS  ++ 
Sbjct: 205 GIHVLINKTKRKIIISWSDHLRAAVQAIKDLPRPINSIYLFSTRKGQPYTTDGFSSIWQR 264

Query: 276 KATKA 280
           K  KA
Sbjct: 265 KMVKA 269


>gi|301057714|ref|ZP_07198787.1| site-specific recombinase, phage integrase family [delta
           proteobacterium NaphS2]
 gi|300448175|gb|EFK11867.1| site-specific recombinase, phage integrase family [delta
           proteobacterium NaphS2]
          Length = 345

 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 49/219 (22%), Positives = 96/219 (43%), Gaps = 24/219 (10%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR----KSGDFDYRKITTKHIRS 121
           KK  TLK    E+ +  H       +R + E Y   ++R    K GD    +I  + ++ 
Sbjct: 27  KKVPTLKRYAEEWFQLPH-----KMNRFTLERYKGTMVRHVYPKLGDHQIDQIKRRDLKV 81

Query: 122 GVES--RKHTPSSAIQFLTS-MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
             +   +K    S+ Q + S +  +F+ A+  E + +NP   +   KR++  I+P+T++ 
Sbjct: 82  FFDRLLKKGMKESSFQLIKSPLSKIFQHAIDDELIQVNPLSGISHSKRRSIDIKPFTEDQ 141

Query: 179 ----MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ----HLQNNIFSIKTQKTG 230
               ++  K +      P   F  LL +G+R  +    G+Q      ++    +K     
Sbjct: 142 AFLFLEAAKDYRKGVYYPH--FLTLLRTGVRIGELL--GLQWKDIDFKSRELVLKRHIFQ 197

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF 269
           T +     +G ++ + MTP   ET      ++++NA +F
Sbjct: 198 TTVMDATKNGQIRTVDMTPHLSETLRALKKEKQINALKF 236


>gi|124485609|ref|YP_001030225.1| formylmethanofuran dehydrogenase subunit E-like protein
           [Methanocorpusculum labreanum Z]
 gi|124363150|gb|ABN06958.1| phage integrase family protein [Methanocorpusculum labreanum Z]
          Length = 320

 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 26/116 (22%), Positives = 55/116 (47%), Gaps = 5/116 (4%)

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           R+ +P+S  Q+ +++   + + + Q+    NP   V+RPK K   ++ + K +  +  +F
Sbjct: 103 RQLSPASLRQYDSALSSFYGYLINQDITEANPMTKVDRPKIKDRELK-YLKHN--EVVAF 159

Query: 186 WSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239
            +    PR  L    +  +G+R S+ C    +H+     +I+ +  G  I +   D
Sbjct: 160 INSIENPRNALLIRTIYATGMRISEICGLLAEHIDFEEETIRVRGKGGKIRIVFCD 215


>gi|302858546|gb|ADL71292.1| gp32 [Mycobacterium phage Eagle]
          Length = 373

 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 50/228 (21%), Positives = 84/228 (36%), Gaps = 30/228 (13%)

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
           K  P++       +R +   AV  + ++ NPC  +E+       +   + E++++  +  
Sbjct: 132 KQYPTARRHAYNVLRAVMNTAVEDKLLSENPC-RIEQKAAAERDVEALSVEELEKVAAEV 190

Query: 187 SEGSQPRLAFEFLLYSGLRCSD------------------SCRAGVQHLQNNIF--SIKT 226
            E    R+A   L ++ LR  +                    R G   +   I     KT
Sbjct: 191 HE--HYRIAVYILAWTSLRFGELIELRRKDIMDDGETMHFRVRRGAARVGQKIVVGETKT 248

Query: 227 QKTGTIITV-----ELPDGFMKLLAMTPIGKETFFINN-DKQKMNATQFSIWFKAKATKA 280
            ++   +TV     E+    MK       G E   +    KQ++    F+   K    K 
Sbjct: 249 VRSKRPVTVPPHVAEMVREHMKDRTKMNKGPEALLVTTTQKQRLTKAAFTRSLKKGYAKI 308

Query: 281 G-VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           G  +   H +R   AT +A AGAT  ELM   G  T   A  Y   ++
Sbjct: 309 GRTDLRVHDLRAVGATYAAQAGATTKELMVRLGHTTPRMAMKYQMASE 356


>gi|268679599|ref|YP_003304030.1| integrase family protein [Sulfurospirillum deleyianum DSM 6946]
 gi|268617630|gb|ACZ11995.1| integrase family protein [Sulfurospirillum deleyianum DSM 6946]
          Length = 346

 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 32/134 (23%), Positives = 61/134 (45%), Gaps = 13/134 (9%)

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
           P +  ++ +++ V+FK+A   + +  NP   V+ PK     +  ++ ED    +    E 
Sbjct: 125 PKTVKEYRSTLSVVFKFAFNDDLIRKNPLTPVKSPKLPRRIVDVFSDED----RKLLIEH 180

Query: 190 SQPRL--AFEFLLYSGLRCSDSCRA---GVQHLQNNIFSIKTQKTGTIITVELPDGF-MK 243
           S  +L    +F+ YSGLR  +        +   +N I      + G   TV+LP G  ++
Sbjct: 181 SSGQLHNLIQFVFYSGLRAGEIIGLKWDNIDFDKNKIDVCMRVRKG---TVDLPKGDKIR 237

Query: 244 LLAMTPIGKETFFI 257
           L+ + P  K+   +
Sbjct: 238 LIDLLPQAKQALLV 251


>gi|229122156|ref|ZP_04251371.1| DNA integration/recombination/invertion protein [Bacillus cereus
           95/8201]
 gi|228661282|gb|EEL16907.1| DNA integration/recombination/invertion protein [Bacillus cereus
           95/8201]
          Length = 369

 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 26/120 (21%), Positives = 57/120 (47%), Gaps = 5/120 (4%)

Query: 93  ISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL---FKWAV 148
           + + ++ +Q +I   G     K+   HI+   ++      +    L   R+L      AV
Sbjct: 86  VGYRAFINQHVIPSIGMVALHKLNVMHIQKCYKTAIDRGIANNSVLLMHRILKSALNLAV 145

Query: 149 RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD 208
           +Q  ++ NP    E PK++   I+ WT+E++++F    S+ S+  + +   + +G+R  +
Sbjct: 146 KQNIISRNPADFAEIPKKERTSIQTWTEEEVKKF-LLHSQESRYHIGYLLAITTGMRMGE 204


>gi|224369851|ref|YP_002604015.1| site-specific recombinase XerD (DNA replication, recombination and
           repair) [Desulfobacterium autotrophicum HRM2]
 gi|223692568|gb|ACN15851.1| site-specific recombinase XerD (DNA replication, recombination and
           repair) [Desulfobacterium autotrophicum HRM2]
          Length = 297

 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 44/199 (22%), Positives = 77/199 (38%), Gaps = 13/199 (6%)

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKSFWSEGSQP 192
           L++++  F + V    + +NP   V  PK      +  T +++       K+      + 
Sbjct: 82  LSALKSFFNYLVVVGKIEVNPAQGVSAPKLPRSIPQFLTVDELFTLLDSIKTRTVVDKRN 141

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM----T 248
           R  FE    +G+R S+     V  +      ++ +  G    + +P G   L A+    T
Sbjct: 142 RAVFELFYSTGMRVSELSNLNVGDIDRESHLVRVRGKGNRERL-VPVGDRALKAVDDYRT 200

Query: 249 PIGKE--TFFINNDKQKMNATQFS--IWFKAKATKAGVNKSAHGVRKFSATISADAGATA 304
            I  E    F+N D  + + +     +    KA   GV  S H +R   AT   DAGA  
Sbjct: 201 CIDGEFGALFLNRDAHRFSDSSIRRVLSVLVKACGLGVPVSPHTLRHSFATHMLDAGADL 260

Query: 305 HELMATYGWKTVDQAETYT 323
             +    G  ++   + YT
Sbjct: 261 RGIQEILGHASLSSTQIYT 279


>gi|324115014|gb|EGC08979.1| phage integrase [Escherichia fergusonii B253]
          Length = 395

 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 74/340 (21%), Positives = 131/340 (38%), Gaps = 34/340 (10%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSAL-------TGSTPKRE 59
           L   V+++  R   ++ Y   G  R I + +  E     A   A+       TG+ PK+E
Sbjct: 39  LKCLVSRKEGRKKFLLRYLYHGRKRAIAIGHWPEVDVNLARQIAIEHKRSLATGTDPKQE 98

Query: 60  YINSPRKKPTTLKWLISEY----RKSAH--WGSLAVNSRISFESYFDQIIRKSGDFDYRK 113
             N  ++   T   L ++Y     KSA   WG          + Y D I    G      
Sbjct: 99  REN--KRMELTFDELFNQYYLPWAKSAKRSWGK-------DVQRYRDHIRPAIGQRLLSD 149

Query: 114 ITTKHIRSGVESRKHTPSSAI--QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
           IT   I    ++   + S+A   + +  ++ +F WA RQ   +++P   V+  +      
Sbjct: 150 ITPASILRLQQTLSTSLSAATCNRVIVLIKAVFTWAGRQSMTSVHPARVVQLLRENNARQ 209

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLA--FEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ 227
           R +T++++++        + P  A   + LL +GLR  +   A  +H+        +   
Sbjct: 210 RYFTEDEIRRIFLSADNDTSPVAARYVKLLLLTGLRRDELRLAKWEHVDPVKRTLWLPET 269

Query: 228 KTGTIITVELPDGFMKLLAMTPI--GKETFFINNDKQKMNATQFSIWFKAKATKAGV--- 282
           K G    V L    M ++   P   G    FI   KQ M  +     F+    +AG+   
Sbjct: 270 KNGYGRIVHLNSLAMDVIRTLPTQRGNPWLFIGK-KQGMPLSNPVKAFQRIVRRAGIFDK 328

Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
               H  R   A +    G T +++ A  G ++   ++ Y
Sbjct: 329 EVCIHTCRHSVAALIVSYGGTLYDVQAQLGHRSSQSSQRY 368


>gi|228988955|ref|ZP_04148994.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|229159077|ref|ZP_04287131.1| DNA integration/recombination/invertion protein [Bacillus cereus
           ATCC 4342]
 gi|228624403|gb|EEK81176.1| DNA integration/recombination/invertion protein [Bacillus cereus
           ATCC 4342]
 gi|228770774|gb|EEM19300.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
          Length = 369

 Score = 38.9 bits (89), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 26/120 (21%), Positives = 57/120 (47%), Gaps = 5/120 (4%)

Query: 93  ISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL---FKWAV 148
           + + ++ +Q +I   G     K+   HI+   ++      +    L   R+L      AV
Sbjct: 86  VGYRAFINQHVIPSIGMVTLHKLNVMHIQKCYKTAIDRGIANNSVLLMHRILKSALNLAV 145

Query: 149 RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD 208
           +Q  ++ NP    E PK++   I+ WT+E++++F    S+ S+  + +   + +G+R  +
Sbjct: 146 KQNIISRNPADFAEIPKKERTSIQTWTEEEVKKF-LLHSQESRYHIGYLLAITTGMRMGE 204


>gi|126651787|ref|ZP_01723989.1| site-specific tyrosine recombinase XerC [Bacillus sp. B14905]
 gi|126591465|gb|EAZ85572.1| site-specific tyrosine recombinase XerC [Bacillus sp. B14905]
          Length = 355

 Score = 38.9 bits (89), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 53/222 (23%), Positives = 90/222 (40%), Gaps = 25/222 (11%)

Query: 126 RKHTPSSAIQFLTSMRVLFKWAV-RQEYVAINPCLSVERPK--RKTEGIRPWT---KEDM 179
           R ++ +S  + + +++  FK+   ++  +  NP   +E PK  RK    RP     +E  
Sbjct: 121 RGNSAASRARKVATLKSFFKYLKGKRRLIEENPAEELETPKIGRK----RPIYMNFQEAT 176

Query: 180 QQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237
           Q      +  + PR      F L  G+R ++ C+  +  +Q    ++   K     TV L
Sbjct: 177 QFIDGIPANQASPRNYCMMMFFLNLGIRVTELCQLNITSIQGRHLTV-VGKGNKERTVYL 235

Query: 238 PDGFMKLLA------MTPI---GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---S 285
            D  M+ LA       TP    G E  F++    +      +   K    ++G+ K   +
Sbjct: 236 NDSCMQALADYENSGKTPYKGNGDEPLFVSQKGTRFTRQTVAKIVKRINQQSGLQKERLT 295

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
            H +R  SAT+   AGA    L    G  +V   + YT   D
Sbjct: 296 PHKLRHTSATMMYKAGADIRSLQHILGHSSVATTQIYTHIED 337


>gi|315122495|ref|YP_004062984.1| hypothetical protein CKC_03735 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495897|gb|ADR52496.1| hypothetical protein CKC_03735 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 55

 Score = 38.9 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 23/46 (50%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 284 KSAHGVRKFSATISADAGATAHELMA-TYGWKTVDQAETYTKGADR 328
           + AHG+RK  ATI+A+AGA+ HELMA T G K +    T  K   R
Sbjct: 2   QRAHGLRKAGATIAANAGASPHELMASTVGQKQIWLISTQEKLTQR 47


>gi|183600284|ref|ZP_02961777.1| hypothetical protein PROSTU_03843 [Providencia stuartii ATCC 25827]
 gi|188020074|gb|EDU58114.1| hypothetical protein PROSTU_03843 [Providencia stuartii ATCC 25827]
          Length = 309

 Score = 38.9 bits (89), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 29/125 (23%), Positives = 55/125 (44%), Gaps = 12/125 (9%)

Query: 112 RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
           R +  K  R G+++     +S    L+++R    W V+Q+ ++ NP  +V  PK K    
Sbjct: 66  RNVAAKSRRKGLQA-----ASMALRLSALRSFCDWMVQQDKLSANPVTAVHAPKAKKRLP 120

Query: 172 RPWTKEDMQQFKSFWSEGSQP-----RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226
           +    +++ +  S   E   P     R   E +  +GLR S+     V+HL   +  ++ 
Sbjct: 121 KNMDVDEVSKLLSM--ESGDPLVVRDRTMLEVMYGAGLRLSELVGLDVRHLDLAMGEVRV 178

Query: 227 QKTGT 231
              G+
Sbjct: 179 MGKGS 183


>gi|331082291|ref|ZP_08331417.1| hypothetical protein HMPREF0992_00341 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330400777|gb|EGG80378.1| hypothetical protein HMPREF0992_00341 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 294

 Score = 38.9 bits (89), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 52/264 (19%), Positives = 107/264 (40%), Gaps = 23/264 (8%)

Query: 90  NSRISFE---SYFDQIIRKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLTSMRVL 143
           N+ +S+E      +Q +++ G  ++ +++   + S +   E +    SS  + + S+R  
Sbjct: 21  NTEVSYERDLKKLEQFLKQEGILEWHQVSAVLLNSYIMYLERKNFAASSISRSVASIRAF 80

Query: 144 FKWAVRQEYVAINPCLSVERPK--RKTEGIRPWTKED--MQQFKSFWSEGSQPRLAFEFL 199
           F++  ++E    NP   ++ PK  +K  GI    + D  + Q K   ++G + R   E L
Sbjct: 81  FQYLCQRECWRENPAEGLKAPKIEKKAPGILTVDEVDLLLSQPKENTAKGVRDRAMLELL 140

Query: 200 LYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTII--------TVELPDGFMKLLAMTP 249
             +G+R S+     ++  +L+    +    +   +I         VE    + +   +  
Sbjct: 141 YATGIRVSELIHLTLRDVNLKLGYLTCSQSERERVIPFGATAKTAVEAYMAWARAELLGE 200

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHEL 307
              E  F+N   + M+   F    K  A  AG+ +  + H +R   A      GA    +
Sbjct: 201 NSSEWLFVNCSGKSMSRQGFWKILKGYAVSAGIQQDITPHTLRHSFAAHLVQNGADLKSV 260

Query: 308 MATYGWKTVDQAETYTK-GADRIR 330
               G   +   + Y     ++IR
Sbjct: 261 QEMMGHSDISTTQIYMNMNVNKIR 284


>gi|154505593|ref|ZP_02042331.1| hypothetical protein RUMGNA_03132 [Ruminococcus gnavus ATCC 29149]
 gi|166032352|ref|ZP_02235181.1| hypothetical protein DORFOR_02055 [Dorea formicigenerans ATCC
           27755]
 gi|153794032|gb|EDN76452.1| hypothetical protein RUMGNA_03132 [Ruminococcus gnavus ATCC 29149]
 gi|166028075|gb|EDR46832.1| hypothetical protein DORFOR_02055 [Dorea formicigenerans ATCC
           27755]
          Length = 387

 Score = 38.9 bits (89), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 26/111 (23%), Positives = 47/111 (42%), Gaps = 1/111 (0%)

Query: 95  FESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA 154
           +  Y  + I K    D+  I  + +   +    ++  +       +  +FK+AV    + 
Sbjct: 81  YRRYIKKQIGKQRVADFNPIILERLLQNMADDDYSTKTIRDVYNILNAMFKYAVHNRILT 140

Query: 155 INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLR 205
            NPC  VE PK KT+ IR  T ++ ++      E     L  +  L +G+R
Sbjct: 141 FNPCAGVEVPKTKTKQIRVLTVKEQREVLEHAKERIHENL-IQVALGTGMR 190


>gi|29347677|ref|NP_811180.1| integrase protein [Bacteroides thetaiotaomicron VPI-5482]
 gi|29339578|gb|AAO77374.1| integrase protein [Bacteroides thetaiotaomicron VPI-5482]
          Length = 396

 Score = 38.9 bits (89), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 71/313 (22%), Positives = 118/313 (37%), Gaps = 53/313 (16%)

Query: 33  IRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSR 92
           I  P  + ++F+  +   ++ S+ K     S R+   +   L+ EY+K   +  L     
Sbjct: 98  IEKPENNGNSFLTFFKEEVSNSSLKE----STRQNHLSTLELLQEYKKDIVFTDLT---- 149

Query: 93  ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEY 152
             F S FD  ++  G          H+ +  +  KH           ++     A+ +EY
Sbjct: 150 FEFVSSFDNYLQSKG---------YHLNTIAKHMKH-----------LKRYVNVAINKEY 189

Query: 153 VAINPCLSVERPKRKTEGIRP-WTKEDMQQFKSFWSEGSQPRL-----AFEFLLYSGLRC 206
           + I      +   +  EG     + E++ + +    EG   +L     AF F  Y+GLR 
Sbjct: 190 MDIQKYAFRKYKIKSIEGSHTHLSPEELNKMEEVNLEGKFTKLQKSKDAFLFCCYAGLRY 249

Query: 207 SDSCR---AGVQHLQNNIFSI-KTQKTGTIITVELPDGFM------KLLAMTPIGKETFF 256
           SD      A +  L    + I K+ KTG  I V LP   +      ++L         FF
Sbjct: 250 SDFINLTAANIVELHQETWLIYKSVKTG--IDVRLPLYLLFEGKGLRVLETYKDDLNGFF 307

Query: 257 INNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWK 314
              D   +N         A A  A ++K  S H  R  +AT+   +GA    +    G K
Sbjct: 308 KLKDNSNVNKD-----LNALAKLAEIDKRISFHTARHTNATLLIYSGANITTVQKLLGHK 362

Query: 315 TVDQAETYTKGAD 327
           +V   + Y    D
Sbjct: 363 SVKTTQVYANIMD 375


>gi|15800482|ref|NP_286494.1| putative integrase encoded by prophage CP-933K; partial
           [Escherichia coli O157:H7 EDL933]
 gi|12513708|gb|AAG55102.1|AE005255_3 putative integrase encoded by prophage CP-933K; partial
           [Escherichia coli O157:H7 str. EDL933]
          Length = 287

 Score = 38.9 bits (89), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 32/145 (22%), Positives = 60/145 (41%), Gaps = 2/145 (1%)

Query: 93  ISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQ 150
           I++ S    I R   D     ITTK I + +     +   +SA    +++   F+ A+ +
Sbjct: 29  INYMSKIKAIRRGLPDAPLEDITTKEIAAMLNGYIDEGKAASAKLIRSTLSDAFREAIAE 88

Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210
            ++  NP  +    K +    R    E ++ +++  S     RLA E  + +G R  D C
Sbjct: 89  GHITTNPVAATRAAKSEVRRSRLTADEYLKIYQAAESSPCWLRLAMELAVVTGQRVGDLC 148

Query: 211 RAGVQHLQNNIFSIKTQKTGTIITV 235
                 + +    ++  KTG  I +
Sbjct: 149 EMKWSDIVDGYLYVEQSKTGVKIAI 173


>gi|169828358|ref|YP_001698516.1| site-specific tyrosine recombinase XerC [Lysinibacillus sphaericus
           C3-41]
 gi|168992846|gb|ACA40386.1| Tyrosine recombinase xerC [Lysinibacillus sphaericus C3-41]
          Length = 320

 Score = 38.9 bits (89), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 57/242 (23%), Positives = 98/242 (40%), Gaps = 29/242 (11%)

Query: 110 DYRKITTKHIRSGVE----SRKHTPSSAIQFLTSMRVLFKWAV-RQEYVAINPCLSVERP 164
           + R+IT + +   +E     R ++ +S  + + +++  FK+   ++  +  NP   +E P
Sbjct: 66  EIREITLEDLYYFMEYCEVQRGNSAASRARKVATLKSFFKYLKGKRRLIEENPAEELESP 125

Query: 165 K--RKTEGIRPWT---KEDMQQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHL 217
           K  RK    RP     +E  Q         + PR      F L  G+R ++ C+  +  +
Sbjct: 126 KIGRK----RPIYMNFREATQFIDGIPVNQASPRNYCMMMFFLNLGIRVTELCQLNITSI 181

Query: 218 QNNIFSIKTQKTGTIITVELPDGFMKLLA------MTPI---GKETFFINNDKQKMNATQ 268
           Q    ++   K     TV L D  M+ LA       TP    G E  F++    +     
Sbjct: 182 QGRHLTV-VGKGNKERTVYLNDSCMQALADYENSGKTPYKGNGDEPLFVSQKGTRFTRQT 240

Query: 269 FSIWFKAKATKAGVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
            +   K    ++G+ K   + H +R  SAT+   AGA    L    G  +V   + YT  
Sbjct: 241 VAKIVKRINQQSGLQKERLTPHKLRHTSATMMYKAGADIRSLQHILGHSSVATTQIYTHI 300

Query: 326 AD 327
            D
Sbjct: 301 ED 302


>gi|312891380|ref|ZP_07750897.1| tyrosine recombinase XerD [Mucilaginibacter paludis DSM 18603]
 gi|311296074|gb|EFQ73226.1| tyrosine recombinase XerD [Mucilaginibacter paludis DSM 18603]
          Length = 299

 Score = 38.9 bits (89), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 47/213 (22%), Positives = 87/213 (40%), Gaps = 20/213 (9%)

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-- 187
           PSS  + ++ ++  +K+ +    ++ +P   +E PK   +     +  D+ +        
Sbjct: 70  PSSQARIISGIKAFYKYLLMDNQLSYDPSELLEAPKLMRKLPDTLSIVDIDKLIDAIDLS 129

Query: 188 --EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG----- 240
             EG + +   E L   GLR ++     + +L  +I  IK    G    + +P G     
Sbjct: 130 KPEGMRNKTMIEVLYGCGLRVTELVNLRISNLYLDIEFIKVLGKGNKERL-VPIGAQAIK 188

Query: 241 FMKL-----LAMTPI--GKETF-FINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVR 290
           F+K+        TP+  G+E   F+N    +++     +  K  A K G+ KS   H  R
Sbjct: 189 FLKIWLQEVRVHTPVKMGEEDIVFLNRRGNRLSRVYVFMMIKELAEKIGLKKSISPHTFR 248

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYT 323
              AT   + GA    +    G +++   E YT
Sbjct: 249 HSFATHLIEGGADLRAVQEMLGHESITTTEIYT 281


>gi|253565241|ref|ZP_04842696.1| integrase [Bacteroides sp. 3_2_5]
 gi|251945520|gb|EES85927.1| integrase [Bacteroides sp. 3_2_5]
          Length = 395

 Score = 38.5 bits (88), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 44/212 (20%), Positives = 83/212 (39%), Gaps = 32/212 (15%)

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW-TKEDMQQFKSFWSEG----SQ 191
           L S+R     A+R   +  NP   +    +K +G R + + E++ +    +        Q
Sbjct: 188 LRSLRTFINIAMRYGLIKTNPFKYI--TIKKVDGKRDFLSAEELSKLSDAYISNKIIDEQ 245

Query: 192 PRLAFEFLL---YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248
            +   ++ L   Y+GLR SD        ++NNI  I   KT  ++++ L    ++LL   
Sbjct: 246 EKEVLQYFLFSCYTGLRYSDLKMLKTSSIKNNILHINMHKTNCLVSIPLSQKALQLLP-N 304

Query: 249 PIGKETFFINNDKQKMNATQFSIW--------FKAKATKAGVNK--SAHGVRKFSATISA 298
            I  E+ ++           F ++         K    + G+ K  + H  R   AT+S 
Sbjct: 305 KINSESDYV-----------FRVYCNKVTNRVLKQVGKRYGIPKKLTCHVARHTFATVSI 353

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIR 330
             G     +    G  ++   + Y K  D ++
Sbjct: 354 ILGIPIEVVSKLLGHSSLKTTQIYAKIVDSVK 385


>gi|218441747|ref|YP_002380076.1| integrase [Cyanothece sp. PCC 7424]
 gi|218174475|gb|ACK73208.1| integrase family protein [Cyanothece sp. PCC 7424]
          Length = 294

 Score = 38.5 bits (88), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 40/199 (20%), Positives = 83/199 (41%), Gaps = 7/199 (3%)

Query: 121 SGVESRKHTPSSAIQF-LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE-GIRPWTKED 178
           S +E+ +   ++ ++  + +++ L  +  +  Y+  N   +V+ P  K E   R  ++ +
Sbjct: 70  SSLENSQRYKTATLKLKINTVKSLLTFGQKVGYLQFNIGSAVKPPNPKNELSSRMLSETE 129

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL---QNNIFSIKTQKTGTIITV 235
           +       ++  + R+  + +   G+R S+      + L    N   +I   K G    V
Sbjct: 130 VTTLIEKANQNQRDRIILKLMYVCGMRVSEVVGLNWRDLVPNNNGGLAIVLGKGGKTRVV 189

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFS 293
            +P+     +   P   +  FI+  K +++        K  A +AG+N   S H +R   
Sbjct: 190 LIPEKLWLDIQQLPKTDDAVFISRKKNRISRKTVHYMIKQYAKQAGINGNVSPHWLRHSH 249

Query: 294 ATISADAGATAHELMATYG 312
           AT S + G   H L  + G
Sbjct: 250 ATHSIERGCNLHLLQQSLG 268


>gi|298383457|ref|ZP_06993018.1| integrase [Bacteroides sp. 1_1_14]
 gi|298263061|gb|EFI05924.1| integrase [Bacteroides sp. 1_1_14]
          Length = 396

 Score = 38.5 bits (88), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 71/314 (22%), Positives = 120/314 (38%), Gaps = 55/314 (17%)

Query: 33  IRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSR 92
           I  P  + ++F+  +   ++ S+ K     S R+   +   L+ EY+K   +  L     
Sbjct: 98  IEKPENNGNSFLTFFKEEVSNSSLKE----STRQNHLSTLELLQEYKKDIVFTDLT---- 149

Query: 93  ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEY 152
             F S FD  ++  G          H+ +  +  KH           ++     A+ +EY
Sbjct: 150 FEFVSSFDNYLQSKG---------YHLNTIAKHMKH-----------LKRYVNVAINKEY 189

Query: 153 VAINPCLSVERPKRKTEGIRP-WTKEDMQQFKSFWSEG-----SQPRLAFEFLLYSGLRC 206
           + I      +   +  EG     + E++ + +    EG      + + AF F  Y+GLR 
Sbjct: 190 MDIQKYAFRKYKIKSIEGSHTHLSPEELNKMEEVNLEGKFTKFQKSKDAFLFCCYAGLRY 249

Query: 207 SDSCR---AGVQHLQNNIFSI-KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ 262
           SD      A +  L    + I K+ KTG  I V LP      L +   GK    + N K 
Sbjct: 250 SDFINLTAANIVELHQETWLIYKSVKTG--IDVRLP------LYLLFEGKGLRVLENYKD 301

Query: 263 KMNA-------TQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGW 313
            +N        +  +    A A  A ++K  S H  R  +AT+   +GA    +    G 
Sbjct: 302 DLNGFFKLKDNSNVNKDLNALAKLAEIDKRISFHTARHTNATLLIYSGANITTVQKLLGH 361

Query: 314 KTVDQAETYTKGAD 327
           K+V   + Y    D
Sbjct: 362 KSVKTTQVYANIMD 375


>gi|323697881|ref|ZP_08109793.1| tyrosine recombinase XerD [Desulfovibrio sp. ND132]
 gi|323457813|gb|EGB13678.1| tyrosine recombinase XerD [Desulfovibrio desulfuricans ND132]
          Length = 307

 Score = 38.5 bits (88), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 53/223 (23%), Positives = 92/223 (41%), Gaps = 23/223 (10%)

Query: 118 HIRS-GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
           H+R+ G++SR     S  + L+S+R  F +AV +++   +P   +E PK   +     ++
Sbjct: 71  HLRARGLKSR-----SLARHLSSLRGFFAFAVGEKWYKEDPGQLLENPKLPRKLPEFLSR 125

Query: 177 EDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT- 231
           E++ +  +        G + ++  E L  +GLR S+     V      +  +K    G+ 
Sbjct: 126 EEISRVLALPDTSTPLGMRDKVMLELLYAAGLRVSELIGMKVLDYDPQVGMLKVFGKGSK 185

Query: 232 --IITVEL--PDGFMKLLAMTPIG---KETFFINNDKQKMNATQFSIW--FKAKATKAGV 282
             +I +     D   + L  T  G   +E F   N   K   T+  +W   K  A  AG+
Sbjct: 186 DRLIPIHYTAQDYLNRYLEFTRPGFKPREDFMFLNRSGK-GLTRQGVWKLIKKYAEAAGI 244

Query: 283 NKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
            +S   H  R   AT   + GA    +    G   +   E YT
Sbjct: 245 KRSISPHTFRHSFATHLLEGGADLRTVQILLGHADISATEIYT 287


>gi|302668703|ref|YP_003832528.1| tyrosine recombinase XerC2 [Butyrivibrio proteoclasticus B316]
 gi|302397043|gb|ADL35946.1| tyrosine recombinase XerC2 [Butyrivibrio proteoclasticus B316]
          Length = 352

 Score = 38.5 bits (88), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 51/249 (20%), Positives = 105/249 (42%), Gaps = 34/249 (13%)

Query: 89  VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-------TPSSAIQFLTSMR 141
           ++SRI  E Y D+ I +    D  +++ + +   ++  KH        P +  +FL+++ 
Sbjct: 59  LSSRI--EKYKDKPIPEYTLVDMMQLSCEDMDECMKWYKHPDKDVFRKPRTINRFLSTLS 116

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG---SQPRLAFE- 197
            LF + V++  +A NP  +V RP  K + +    + +  QF S    G   ++ +L +  
Sbjct: 117 SLFTFYVKRRKLADNPVSAVRRPAVKRKEVNRLYEGEKSQFLSAVMNGTGLTKRQLPYHE 176

Query: 198 -----------FLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLL 245
                        L++G+R S+     +  +     S++  +K G I  V L D      
Sbjct: 177 RQWLRDYTIARVFLFTGIRVSELVGLDISDVNLREHSLRVVRKGGNIERVYLDDE----- 231

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKF--SATISADAGAT 303
             T +    +    ++ ++   + +++   K  + GV      ++K+  +   S   G T
Sbjct: 232 --TDLILREYLAEREEMELTDDETALFISRKKQRIGVRAVEKLIKKYQQAGLPSHPNGLT 289

Query: 304 AHELMATYG 312
            H L AT+ 
Sbjct: 290 PHRLRATFA 298


>gi|160896902|ref|YP_001562484.1| integrase family protein [Delftia acidovorans SPH-1]
 gi|160362486|gb|ABX34099.1| integrase family protein [Delftia acidovorans SPH-1]
          Length = 365

 Score = 38.5 bits (88), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 44/104 (42%), Gaps = 9/104 (8%)

Query: 114 ITTKHIR---SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170
           +   HIR   + + SR  +P      L+  R  F+WA +Q  V  NP   V  PK     
Sbjct: 74  LQPAHIRRFVAQMHSRGRSPRGIALILSGWRSFFRWAAQQSLVPFNPVEGVRGPKAPKPL 133

Query: 171 IRPWTKEDMQQFKSFWSEGSQPRL-----AFEFLLYS-GLRCSD 208
            +    +D  Q  +F +  + P +     A   LLYS GLR  +
Sbjct: 134 PKALGVDDAVQLAAFSNAEADPWIEARDAAITELLYSCGLRVGE 177


>gi|77462917|ref|YP_352421.1| putative integrase/resolvase recombinase protein phage-related
           integrase [Rhodobacter sphaeroides 2.4.1]
 gi|77387335|gb|ABA78520.1| putative integrase/resolvase recombinase protein phage-related
           integrase [Rhodobacter sphaeroides 2.4.1]
          Length = 605

 Score = 38.5 bits (88), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 34/152 (22%), Positives = 60/152 (39%), Gaps = 27/152 (17%)

Query: 103 IRKSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCL 159
           +R +   ++R +T + I    E  K    +  +  ++L+S+     WA    Y+A NPC 
Sbjct: 303 LRATEVAEFRGMTIRQIVEANEQAKRPVLSDRTVNRYLSSLSAFCSWAEANGYIASNPCS 362

Query: 160 SVERPKRKTEGIRPWTKEDMQQ-FKSFWSEGSQPRLAFEF-------------------L 199
            +  PK +     P+T + M   F+S    G +   A+ +                   +
Sbjct: 363 GMALPKERGSKTLPFTSDQMNTLFRSPLFAGCESEAAWRYISKPGPVLIRDHRYWVPLIM 422

Query: 200 LYSGLRCSDSCRAGVQHLQNN----IFSIKTQ 227
           LYSG R  +  +     L+      IF I T+
Sbjct: 423 LYSGARPGEIAQLATSDLRQEHGRWIFHITTE 454


>gi|220926098|ref|YP_002501400.1| integrase family protein [Methylobacterium nodulans ORS 2060]
 gi|219950705|gb|ACL61097.1| integrase family protein [Methylobacterium nodulans ORS 2060]
          Length = 344

 Score = 38.5 bits (88), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 59/298 (19%), Positives = 111/298 (37%), Gaps = 20/298 (6%)

Query: 23  YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSA 82
           YY+ +  G R+ +  P    F+ ++ +A    T              T+ WLI +Y  S 
Sbjct: 23  YYYHRPTGIRL-VGEPGTPEFLASFQAAAKSMTQTH--------GAGTVAWLIRQYCDSP 73

Query: 83  HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT------PSSAIQF 136
            W  LA +++         +  K G        ++  R  +  R H       P +A   
Sbjct: 74  QWKKLAASTQEIGRLNLKAVEDKWGATPLEHAQSQRTRP-LYLRWHDKMAATHPRAADAK 132

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196
           L+++  +  W V +  +  NP  + ER  +     + W  E +  F    +   + RLA 
Sbjct: 133 LSALARVLSWGVDRGLITNNPVATFERAYKADRAEKIWLPEHVAAFNK--AASPELRLAL 190

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFF 256
              L++G R  D  +           S++  K+G  + +         L   P    T  
Sbjct: 191 LLALHTGQRQGDLLQLPWSGYDGTAVSLRQGKSGRKVWIPATRALRAELDAAPRRAVTIL 250

Query: 257 INNDKQKMNATQFS-IWFKA-KATKAGVNKSAHGVRKFSATISADAGATAHELMATYG 312
              D +      F+  W +A +A++   +   H +R  + T+ ++ G+T  E+    G
Sbjct: 251 TKPDGESWTKDAFTWAWGRAFEASEIKDDLHFHDLRGTAVTMLSEVGSTPQEIATITG 308


>gi|320659984|gb|EFX27526.1| Phage integrase family protein [Escherichia coli O55:H7 str. USDA
           5905]
          Length = 356

 Score = 38.5 bits (88), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 48/215 (22%), Positives = 82/215 (38%), Gaps = 11/215 (5%)

Query: 25  FRKGHGRRIRLPYPHESTFIPAYMSALTGST--PKREYINSPRKKPTTLKWLISEYRKSA 82
           F  G  RRI +     +  I A +   +G    P    INS      TL   +  Y K  
Sbjct: 35  FGLGRDRRIAI-----TEAIQANIELFSGHKHKPLTARINS--DNSVTLHSWLDRYEKIL 87

Query: 83  HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSM 140
               +   + I++ S    I R   D     ITTK I + +     +    SA    +++
Sbjct: 88  ASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAMLNGYIDEGKAVSAKLIRSTL 147

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200
              F+ A+ + ++  NP  +    K +    R    E ++ +++  S     RLA E  +
Sbjct: 148 SDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEYLKIYQAAESSPCWLRLAMELAV 207

Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
            +G R  D C      + +    ++  KTG  I +
Sbjct: 208 VTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAI 242


>gi|15897309|ref|NP_341914.1| XerC/D integrase-recombinase protein (xerC/D) [Sulfolobus
           solfataricus P2]
 gi|284174561|ref|ZP_06388530.1| XerC/D integrase-recombinase protein (xerC/D) [Sulfolobus
           solfataricus 98/2]
 gi|13813520|gb|AAK40704.1| XerC/D integrase-recombinase protein (xerC/D) [Sulfolobus
           solfataricus P2]
 gi|261601982|gb|ACX91585.1| integrase family protein [Sulfolobus solfataricus 98/2]
          Length = 291

 Score = 38.5 bits (88), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 43/206 (20%), Positives = 85/206 (41%), Gaps = 20/206 (9%)

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           VE ++    +   ++ ++R   KW      V++ P +    PK + + ++   +  +Q+ 
Sbjct: 77  VEKKRAKSVTIRYYIIAVRRFLKWI----NVSVRPPI----PKVRRKEVKALDEIQIQKV 128

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH--LQNNIFSIKTQKTGTIITVELPDG 240
            +   + ++ +L    LL +GLR ++     V+   L+NN+  ++  K G    V   D 
Sbjct: 129 LN-ACKRTKDKLIIRLLLDTGLRANELLSVLVKDIDLENNMIRVRNTKNGEERIVFFTDE 187

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWF---KAKATKAGVNKSAHGVRKFSATIS 297
              LL     GK+       + K+   ++   +   K    K G++   H +R   AT+S
Sbjct: 188 TKLLLRKYIKGKKA------EDKLFDLKYDTLYRKLKRLGKKVGIDLRPHILRHTFATLS 241

Query: 298 ADAGATAHELMATYGWKTVDQAETYT 323
              G     L    G K +   + YT
Sbjct: 242 LKRGINVITLQKLLGHKDIKTTQIYT 267


>gi|256841123|ref|ZP_05546630.1| tyrosine recombinase XerC [Parabacteroides sp. D13]
 gi|256736966|gb|EEU50293.1| tyrosine recombinase XerC [Parabacteroides sp. D13]
          Length = 302

 Score = 38.5 bits (88), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 60/248 (24%), Positives = 106/248 (42%), Gaps = 25/248 (10%)

Query: 99  FDQIIR--KSGDFDYRKITTKHIRS---GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYV 153
           F + +R  + G FD  +I +  +RS    +   K +P S  + L+S++  FK+ +++  V
Sbjct: 31  FQRYVREHREGVFDPGEIDSDFVRSWIVCLMDEKFSPVSVNRKLSSLKSFFKFLMKRGIV 90

Query: 154 AINPCLSVERPKRKTE---GIRPWTKEDMQQFKSFWS--EGSQPRLAFEFLLYSGLRCSD 208
           + NP   V  PK K      I+    E +     F    EG + RL  E L  +G+R S+
Sbjct: 91  SANPLRLVSGPKTKKPLPCFIKDSELEALLDGDGFDEDFEGVRNRLVIEMLYDTGMRRSE 150

Query: 209 SCRAGVQHLQNNIFSIKTQKTG---TIITVELPDGFMKL-LAMTPI-------GKETFFI 257
               G++++  +  +++ + TG       +   +G   L LA T +         E FF+
Sbjct: 151 LI--GIRNVDVDYEAMQVKVTGKRNKQRLIPFAEGLKNLMLAYTEVRDREVEAAGEWFFV 208

Query: 258 -NNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKT 315
             N  Q      ++I  K  +    + K S H +R   AT   + GA  + +    G  +
Sbjct: 209 RKNGNQLSTGIVYNIVKKQLSEIPMLAKRSPHVLRHSFATSMLNNGAELNAVKDLLGHSS 268

Query: 316 VDQAETYT 323
           +     YT
Sbjct: 269 LASTSVYT 276


>gi|218961949|ref|YP_001741724.1| site-specific recombinase, phage integrase family [Candidatus
           Cloacamonas acidaminovorans]
 gi|167730606|emb|CAO81518.1| site-specific recombinase, phage integrase family [Candidatus
           Cloacamonas acidaminovorans]
          Length = 298

 Score = 38.5 bits (88), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 53/255 (20%), Positives = 99/255 (38%), Gaps = 25/255 (9%)

Query: 92  RISFESYFDQIIR--KSGDFDYRKITTKHIRSGVESRKHTPS---SAIQFLTSMRVLFKW 146
           ++  E +   I R  ++G+ D + IT  +IR         P    S  +   ++   F++
Sbjct: 26  KLDLEQFHSFIQRYFENGEVDIKGITVLNIRDFFRFLNEKPDCNRSLARKSAALNSFFRY 85

Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLAFEFLLYS 202
             R  ++  NP   ++RPK +    + +T+E+++   S        G + +   E L  S
Sbjct: 86  CKRSGFIQNNPMEKIKRPKYEVPLPKCFTEEEVRTLLSIPDTDSPFGIRNKAILETLYSS 145

Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQKTGT---II-----TVELPDGFMKLLA--MTPIGK 252
           GLR S+     +Q +      ++    G    I+      +E  + ++K+    M     
Sbjct: 146 GLRISELAGIRLQDIDLKRGLVRVTGKGNKQRIVPLGSYAIEAINNYLKVRPQFMRENSP 205

Query: 253 ETFFINNDKQKMNATQFSI----WFKAKATKAGVNKSAHGVRKFSATISADAGATAHELM 308
           +  F+    +  +  Q  I    +F+  A   G   S H +R   AT     GA    + 
Sbjct: 206 DLLFLTKSGKAFDTKQLDIILKRYFELVAKAKGY--SPHSLRHSFATHLLSRGADLRAIQ 263

Query: 309 ATYGWKTVDQAETYT 323
              G   +   ETYT
Sbjct: 264 ELLGHSLLSTTETYT 278


>gi|157960633|ref|YP_001500667.1| tyrosine recombinase XerD [Shewanella pealeana ATCC 700345]
 gi|157845633|gb|ABV86132.1| tyrosine recombinase XerD [Shewanella pealeana ATCC 700345]
          Length = 300

 Score = 38.5 bits (88), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 50/254 (19%), Positives = 104/254 (40%), Gaps = 31/254 (12%)

Query: 98  YFDQIIRKSGD-------FDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQ 150
           + D+ ++K GD       FD R    +    G        +S+ + ++S+R  + + + +
Sbjct: 38  HLDRYLQKQGDDLVTCSQFDIRNYLAERFDKGF-----AKTSSARMMSSLRRFYGYLIVK 92

Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG----SQPRLAFEFLLYSGLRC 206
           + +  +P   +E PK   +     ++ED+ +  +   +     S+ +   E L  +GLR 
Sbjct: 93  KQIDSDPMALIESPKLARKLPDSLSEEDIDRLLAEPEQDDPIESRDKAMLELLYATGLRV 152

Query: 207 SD---------SCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI-GKETFF 256
           S+         S R G+  +       +    G +   E+ + ++K      + GK++  
Sbjct: 153 SELVGLTMEQLSLRQGLVRITGKGGKERLVPLGELAITEI-ESYLKFARAELLKGKQSDV 211

Query: 257 INNDKQKMNATQFSIWFKAK--ATKAGVNK--SAHGVRKFSATISADAGATAHELMATYG 312
           +   K+    T+ + W + K  A +AG++   S H +R   AT   + GA    +    G
Sbjct: 212 LFPSKRAQQMTRQTFWHRIKLYALRAGISTELSPHTLRHAFATHLLNHGADLRVVQLLLG 271

Query: 313 WKTVDQAETYTKGA 326
              +   + YT  A
Sbjct: 272 HSDLSTTQIYTHVA 285


>gi|213964731|ref|ZP_03392931.1| tyrosine recombinase XerC [Corynebacterium amycolatum SK46]
 gi|213952924|gb|EEB64306.1| tyrosine recombinase XerC [Corynebacterium amycolatum SK46]
          Length = 304

 Score = 38.5 bits (88), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 49/217 (22%), Positives = 88/217 (40%), Gaps = 22/217 (10%)

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT---EGIRPW-TKEDMQQFKSFW 186
           SS  +  TS+R    W V ++ +  +P L +  PK+     E + P   +E +++  S  
Sbjct: 83  SSLARLTTSIRQFCSWLVARQILDADPSLRLSTPKKHQHLPEVLSPEKVEEAIEKVSSED 142

Query: 187 SEGSQPRLAFEFLLYS-GLRCSDSCRAGVQHLQNNIFSIKTQKTGT---IITVELP---- 238
           S  +   LA   LLY+ G+R  + C+A V  +  +   I     G    I+    P    
Sbjct: 143 SAVAARDLAIVELLYATGMRVEELCKADVSDVNFSRHIISVVGKGDKQRIVPFGAPAEAA 202

Query: 239 -DGFMKLLAMTPI---GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSA 294
             G++++    P     +   F+     ++N  Q       +      + S H +R  +A
Sbjct: 203 LKGWLQVRGNFPASAQAEHALFLGVRGGRLNPRQAR-----RVIHKWADVSPHALRHSAA 257

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330
           T   + GA    +    G  ++   + YT   ADR+R
Sbjct: 258 TAMVEGGADLRVVQEMLGHSSLATTQIYTHVSADRLR 294


>gi|313202049|ref|YP_004040707.1| tyrosine recombinase xerd [Methylovorus sp. MP688]
 gi|312441365|gb|ADQ85471.1| tyrosine recombinase XerD [Methylovorus sp. MP688]
          Length = 298

 Score = 38.5 bits (88), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 45/219 (20%), Positives = 84/219 (38%), Gaps = 27/219 (12%)

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK---------RKTEGIRPWTKEDMQ 180
           P S  + + S+R  +++ +R+  ++++P L ++ PK          + E +      D+ 
Sbjct: 70  PRSVSRLIASLRRFYRYGLREGQISVDPTLLIDTPKLPRSLPKSLNEDEVVALLNAPDIA 129

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSD--SCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
           Q     + G + R   E L   GLR S+    R     L   +  +  + + T +     
Sbjct: 130 Q-----AIGLRDRAMLETLYACGLRVSELVGLRYTEVSLNEGVVRVTGKGSKTRLVPLGE 184

Query: 239 DGFMKLLAMTPIGK---------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287
           +    LL     G+         ++ F+    + M    F    K  A +AG++K  S H
Sbjct: 185 ESVDWLLRYAREGRPQILQQRVSDSLFVTQRGEAMTRQAFWYLIKRYALQAGIHKPLSPH 244

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            +R   AT   + GA    +    G   +   + YT  A
Sbjct: 245 VLRHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTHVA 283


>gi|309792261|ref|ZP_07686733.1| integrase domain-containing protein [Oscillochloris trichoides DG6]
 gi|308225802|gb|EFO79558.1| integrase domain-containing protein [Oscillochloris trichoides DG6]
          Length = 301

 Score = 38.5 bits (88), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 61/139 (43%), Gaps = 10/139 (7%)

Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
           ITT  I+S ++SR   P +  + + S+   F+WAV + Y   NP   +          +P
Sbjct: 40  ITTLDIQSFLDSRNEQPGTTNRRIASLGRFFRWAVARGYCLYNPLEQIAGRYHTEHRPQP 99

Query: 174 WTKE-DMQQFKSFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
              E + +   +  +  SQP RL F  L   G+R  +        L  N+  +  +    
Sbjct: 100 IVSEAERRALDTAIAACSQPYRLIFTLLREIGVRTDEV-------LNLNVGDVILETGRE 152

Query: 232 IITV-ELPDGFMKLLAMTP 249
           ++ V +   G  +++A+TP
Sbjct: 153 VLLVQDTKSGNKRMVALTP 171


>gi|288916689|ref|ZP_06411064.1| integrase family protein [Frankia sp. EUN1f]
 gi|288351944|gb|EFC86146.1| integrase family protein [Frankia sp. EUN1f]
          Length = 406

 Score = 38.5 bits (88), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 45/204 (22%), Positives = 75/204 (36%), Gaps = 33/204 (16%)

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           +P S       +    + AVR  Y+  NP   VERPK        WTKE   Q ++F   
Sbjct: 137 SPGSVAVVHRVLHRALRDAVRWNYLVRNPSDDVERPKLDRRVPTVWTKE---QLRTFVDH 193

Query: 189 GSQPRLAFEFL--LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL-- 244
               RL   +L  + +GLR           +  +  ++ + +   ++  +  DG  K   
Sbjct: 194 VRGDRLYALYLVAITTGLRRGALVGLRRHDVDLDAGTLSSSRPRIVVDNKAVDGEHKTDS 253

Query: 245 ----LAMTPIGKETFFINNDKQKMNATQFSI---------------------WFKAKATK 279
               L + P+  +   ++ D+ +   T+F                       WF+A A  
Sbjct: 254 AYRPLVLDPVTAKALRVHVDRWEQERTEFGFTTDLLFCWPDGTGIHPDTVTDWFQAHAKS 313

Query: 280 AGVNK-SAHGVRKFSATISADAGA 302
           AG+     H VR   AT +  +G 
Sbjct: 314 AGLPVIRLHDVRHSYATAALKSGV 337


>gi|254701722|ref|ZP_05163550.1| Phage integrase [Brucella suis bv. 5 str. 513]
 gi|261752275|ref|ZP_05995984.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513]
 gi|261742028|gb|EEY29954.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513]
          Length = 341

 Score = 38.5 bits (88), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 56/266 (21%), Positives = 101/266 (37%), Gaps = 15/266 (5%)

Query: 62  NSPRKKPTTLKW--LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-----FDYRKI 114
           N  R  P   K+  +I+ Y+ S  +  LA +++ ++  + D+I +K GD     FD  + 
Sbjct: 46  NDSRVIPDASKFRAVITAYKSSHDYQKLADSTKRNWNGWLDRIGKKFGDLSIAQFDLPQK 105

Query: 115 TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRP 173
               IR         P +A   +  +  +  +AV     ++ NPC  +++  +       
Sbjct: 106 IRPVIRKWRGEFADKPRTADYGMQVLSRVLSYAVDPLGKISQNPCEGIKQLYKNDRAAII 165

Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233
            T +D+ + K+  S   +   A +   ++GLR  D  R    H+ +N   + T K+    
Sbjct: 166 RTDQDIARLKTKCS--PEVAWAVDLAAHTGLRAGDLLRLSWSHITDNAIILPTGKSRHTK 223

Query: 234 TVELP--DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF---KAKATKAGVNKSAHG 288
              +P       LL   P        N  K       F   F   + +A     +   H 
Sbjct: 224 EAVIPLYAELRALLQTIPRRSPIVLTNTRKAPWTVNGFGSSFSDCREEAKLGDRDLHFHD 283

Query: 289 VRKFSATISADAGATAHELMATYGWK 314
            R  +AT    AG +   +    GW+
Sbjct: 284 FRGTAATKFYIAGLSERVIAEIMGWE 309


>gi|149199882|ref|ZP_01876911.1| phage integrase family protein [Lentisphaera araneosa HTCC2155]
 gi|149137053|gb|EDM25477.1| phage integrase family protein [Lentisphaera araneosa HTCC2155]
          Length = 441

 Score = 38.5 bits (88), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 58/254 (22%), Positives = 94/254 (37%), Gaps = 34/254 (13%)

Query: 102 IIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV 161
           +++ SG F+ R I+ K   +  E ++ +PS+  +++T ++ +F     +  + INP   +
Sbjct: 128 LLKDSGKFNKRIISKKGSYTS-EIKELSPSTINEYMTHIKQVFTLLHDRANLLINPFDGI 186

Query: 162 -----ERPKRKTEGIRPWTK-EDMQQFKSFWSEGSQPRLAFEFL-------LYSGLRCSD 208
                ++ KR    I   TK  D       W   S P+L    L       L +GLR  D
Sbjct: 187 PKVDGKKKKRDVFEISELTKINDFLVKGKSWKYSSNPKLDILILRTLFIVGLNTGLRRGD 246

Query: 209 SCRAG--VQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA-----------MTPIGKETF 255
            C        L  N  S++  KT   +++ +    M  L            + P   + +
Sbjct: 247 ICMLDWPSVDLDKNRISLENSKTEVFVSIPISAPLMTFLNERHAITGGSGFVVPELADMY 306

Query: 256 FINNDKQKMNATQFSIWFKAKATK-------AGVNKSAHGVRKFSATISADAGATAHELM 308
             N+D       Q     K K TK       A  NK  H +R     +    G +  EL 
Sbjct: 307 QNNSDGISYRFRQMLDKLKIKNTKEVTGRTVAVSNKDIHSLRHTFCYLHGIQGTSIQELQ 366

Query: 309 ATYGWKTVDQAETY 322
              G  T    E Y
Sbjct: 367 LMTGHLTPKMTEAY 380


>gi|297242743|ref|ZP_06926681.1| site-specific recombinase XerD [Gardnerella vaginalis AMD]
 gi|296888954|gb|EFH27688.1| site-specific recombinase XerD [Gardnerella vaginalis AMD]
          Length = 322

 Score = 38.5 bits (88), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 52/245 (21%), Positives = 96/245 (39%), Gaps = 38/245 (15%)

Query: 113 KITTKHIRS--GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170
           ++TT  +RS    ESR H  SS  + + ++R  F W    EY++ NP   +  PK K   
Sbjct: 64  ELTTDDLRSWMADESRSHARSSLARKVVAVRGFFAWCQHVEYISSNPAEILMTPKIKN-- 121

Query: 171 IRPWTKEDMQQFKSFWSEGSQPRLA-----------------FEFLLYSGLRCSDSCRAG 213
           + P   ++ Q      +  S+  ++                  E L  +G+R  +     
Sbjct: 122 MLPSVLDEYQAESLMNNVDSKANVSSSCTKNQKAVGLRNAAILELLYATGIRVGELTSLN 181

Query: 214 VQHLQNNIFSIKTQKTGT---IITVELP-----------DGFMKLLAMTPIGKETFFINN 259
           +Q +  +  +IK    G    ++   +P           DG   LL  +   +E  F+  
Sbjct: 182 IQDINFSSHTIKVTGKGNKQRVVPFGVPAYKALSAWISKDGREILLRNSV--EEAAFLGT 239

Query: 260 DKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
             ++++          +A  A V + S H +R  +AT   + GA   E+    G  +++ 
Sbjct: 240 RGKRIDQRLVRRIVHDEAKSAHVPDISPHALRHSAATHMLNGGADLREVQELLGHSSLNT 299

Query: 319 AETYT 323
            + YT
Sbjct: 300 TQRYT 304


>gi|295110002|emb|CBL23955.1| Site-specific recombinase XerD [Ruminococcus obeum A2-162]
          Length = 354

 Score = 38.5 bits (88), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 38/194 (19%), Positives = 83/194 (42%), Gaps = 25/194 (12%)

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-----SEGSQ 191
           ++++R  + +  ++E +  NP + ++ PK   + I     +++     +      S   Q
Sbjct: 119 ISALRSFYAYYYKREMIHSNPTVLIDVPKIHDKSIIRLDTDEVALLLDYIEHCGDSLTGQ 178

Query: 192 PRLAFE-----------FLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELP 238
            R+ +E            LL +G+R S+     ++ +  +NN   + T+K G  + V   
Sbjct: 179 KRVYYEKTKERDLAIVTLLLGTGIRVSECVGLDIEDVDFKNNGIKV-TRKGGNEMVVYFG 237

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISA 298
           +   K L      K    +      +   + ++++ A+  + GV    + V+K+S  I+ 
Sbjct: 238 EEVEKAL------KRYLEVRAGITPLAGHEHALFYSAQRKRMGVQAVENMVKKYSRQITT 291

Query: 299 DAGATAHELMATYG 312
               T H+L +TYG
Sbjct: 292 TKKITPHKLRSTYG 305


>gi|237725482|ref|ZP_04555963.1| integrase [Bacteroides sp. D4]
 gi|229436169|gb|EEO46246.1| integrase [Bacteroides dorei 5_1_36/D4]
          Length = 383

 Score = 38.5 bits (88), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 72/284 (25%), Positives = 117/284 (41%), Gaps = 46/284 (16%)

Query: 72  KWLISEYRKSAHWGSLAVNS--RISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH- 128
           +WL    +KS+  G   VNS  + +F+   D  IR   D DY       +R+  ++R + 
Sbjct: 104 RWLEDNGKKSSIRG---VNSIRKATFQFRGDVPIRML-DKDYCMAFMNFLRNDYKARTNR 159

Query: 129 --TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF---- 182
             + ++A  ++T +  +  WAVR +Y++ NP   +    R     RP +K +  Q     
Sbjct: 160 TISMTTATGYVTVLSAMLNWAVRNDYLSENPFTHIAAADRIH---RPESKREFLQIDELK 216

Query: 183 KSFWSEG-SQPRL--AFEFLLYSGLRCSDSCRA--GVQHLQNN---IFSIKTQKTGTIIT 234
           K   +E  ++P +  AF F  Y  LR SD      G  H   +   +F++  +KT   I 
Sbjct: 217 KLIATECPTRPAVKQAFLFSCYCALRISDVIGLTWGDIHKDGDQWRVFTV-MEKTNDPIY 275

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKM----NATQFSIWFKAKATKAGVNK------ 284
           + L    MK L      K       D+ K+    + ++  I     A  AG+NK      
Sbjct: 276 LPLSKQAMKWLPERGDAK-------DEDKVFDLPSESRICIILDKWAKAAGINKHVTYHV 328

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           S H       T+  D   T+  L    G K +   + Y K  D+
Sbjct: 329 SRHTFATMMLTLDVDIYTTSKLL----GHKNISTTQIYAKIIDQ 368


>gi|295426272|ref|ZP_06818932.1| tyrosine recombinase XerC [Lactobacillus amylolyticus DSM 11664]
 gi|295064011|gb|EFG54959.1| tyrosine recombinase XerC [Lactobacillus amylolyticus DSM 11664]
          Length = 307

 Score = 38.5 bits (88), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 48/243 (19%), Positives = 99/243 (40%), Gaps = 24/243 (9%)

Query: 104 RKSGDF-DYRKITTKHIRSGVES---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINP-- 157
           R++G F D+ KI T+ I   ++S   RK + +S ++ ++S+R  +++  +++ + ++P  
Sbjct: 40  RENGGFVDWDKIQTRDIEVYLQSMAERKLSRNSQMRKMSSLRSFYRFLAKRKLIKVDPTQ 99

Query: 158 --CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ 215
              L  E  K       P  K+ +   +   +   +    FE    +G+R S+     + 
Sbjct: 100 TIVLRTEERKLPQFFYAPEMKQVISSLQGNTALTERNLALFELFYTTGMRVSEVSSLKIN 159

Query: 216 HLQNNIFSIKTQ-------------KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ 262
            +  ++  I                KT + +   L +   KLL  +   ++  F+NN  Q
Sbjct: 160 QVDFDLQMILVHGKGNKDRYVAFDDKTKSALQNYLENARPKLLG-SKADQDFIFLNNQGQ 218

Query: 263 KMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
            +         +    KAG++     H +R   AT   + GA    +    G + +   +
Sbjct: 219 PLTDRGIEYIMQRTFNKAGISGKVHPHELRHTFATAMLNNGADLRTVQELLGHENLSTTQ 278

Query: 321 TYT 323
            YT
Sbjct: 279 IYT 281


>gi|282852078|ref|ZP_06261436.1| tyrosine recombinase XerD [Lactobacillus gasseri 224-1]
 gi|282556838|gb|EFB62442.1| tyrosine recombinase XerD [Lactobacillus gasseri 224-1]
          Length = 296

 Score = 38.5 bits (88), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 52/271 (19%), Positives = 111/271 (40%), Gaps = 28/271 (10%)

Query: 89  VNSRISFESYFDQIIRK---SGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFK 145
           ++ R   E Y D +  +   S + DY  +      +  + +    +S  + ++S+R  ++
Sbjct: 24  ISYRTDLEEYLDYLQDQNETSWEVDY--LVVDAFLATQKDKGKATTSISRMISSLRKFYQ 81

Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLAFEFLLY 201
           W +RQ+ +  +P + ++ PK +       ++E++ +  +        G + R   E L  
Sbjct: 82  WLLRQDIIERDPLVKIDSPKSERRLPTALSEEEVDKLLAAPDTNTPLGIRDRAMLEVLYA 141

Query: 202 SGLRCSD--SCRAGVQHLQNNIFSI--KTQKTGTIITVELPDGFM-------KLLAMTPI 250
           +G+R S+  + R G  H    I  +  K  K   +   E+   ++       +   +   
Sbjct: 142 TGMRVSELINLRTGDIHADLKIIRVLGKGSKERLVPITEVALSWLEKYQTDVRDAQVLKS 201

Query: 251 GK--ETFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSA--HGVRKFSATISADAGATA 304
           G+  +  F+NN   ++  T+ ++W K K      G+ K+   H +R   AT   + GA  
Sbjct: 202 GQFTDVIFLNNHGHQL--TRQAVWQKIKKYCQLIGITKNVTPHTLRHTFATHLLENGADL 259

Query: 305 HELMATYGWKTVDQAETYTKGADRIRLGIKN 335
             +    G   +   + YT    +  L + N
Sbjct: 260 RVVQEILGHSDITTTQIYTNLTQKHILEVYN 290


>gi|315619082|gb|EFU99663.1| integrase [Escherichia coli 3431]
          Length = 231

 Score = 38.5 bits (88), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 25/107 (23%), Positives = 48/107 (44%)

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           +SA    +++  +F+ A+ + +VA NP  +    K +    R    E ++ + +      
Sbjct: 12  ASAKLIRSTLVDVFREAIAEGHVATNPVTATRTAKSEVRRSRLTANEYVEIYHAAEPLPI 71

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237
             RLA +  + +G R  D CR     + +N   I+  KTG  + + L
Sbjct: 72  WLRLAMDLAVVTGQRVGDLCRMKWSDINDNHLHIEQSKTGAKLAIPL 118


>gi|229110029|ref|ZP_04239606.1| DNA integration/recombination/invertion protein [Bacillus cereus
           Rock1-15]
 gi|228673382|gb|EEL28649.1| DNA integration/recombination/invertion protein [Bacillus cereus
           Rock1-15]
          Length = 369

 Score = 38.5 bits (88), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 26/118 (22%), Positives = 58/118 (49%), Gaps = 5/118 (4%)

Query: 95  FESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL---FKWAVRQ 150
           ++++ +Q +I   G     K+   HI+   ++      +    L   R+L      AV+Q
Sbjct: 88  YKAFINQHVIPSIGMVALHKLNVMHIQKCYKAAIDKGIANNSILLMHRILKSALNLAVKQ 147

Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD 208
             ++ NP    E PK++   I+ WT+E++++F +  S+ S+  + +   + +G+R  +
Sbjct: 148 NIISRNPTDFAEIPKKEKTPIQTWTEEEVKKFLAH-SQESRYHIGYLLAITTGMRLGE 204


>gi|126661716|ref|ZP_01732715.1| tyrosine type site-specific recombinase [Flavobacteria bacterium
           BAL38]
 gi|126625095|gb|EAZ95784.1| tyrosine type site-specific recombinase [Flavobacteria bacterium
           BAL38]
          Length = 408

 Score = 38.5 bits (88), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 45/209 (21%), Positives = 85/209 (40%), Gaps = 17/209 (8%)

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF--KSF-WS 187
           +S +++  +++ +  +A+R E +  NP  ++   K K E     T+E+++    K+F   
Sbjct: 189 NSVVKYFKNLKTICNYAIRMELIDKNP-FNIYNGKIKVEEATFLTQEELESIENKTFKID 247

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAG----VQHLQNNI-FSIKTQKTGTIITVELPDGFM 242
              + +  F F  Y+G    D+ +      +Q  +  +      QKT T   V +    +
Sbjct: 248 RLERVKDIFLFSCYTGYAPVDAIKLTRKNIIQDTEKTLWIKANRQKTNTKANVPILPPVL 307

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAH---GVRKFSATISAD 299
           K++       +T       QKMNA     + K  A   G+ K          F+ T++  
Sbjct: 308 KIINKYQFYGDTLLPKISNQKMNA-----YLKEIADIIGLEKKLTWYVARHTFATTVTLG 362

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADR 328
            G     + A  G  T+ Q + Y K  D+
Sbjct: 363 NGIRIENVSAMLGHTTIKQTQHYAKILDQ 391


>gi|228961935|ref|ZP_04123475.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis serovar pakistani str. T13001]
 gi|228797758|gb|EEM44831.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis serovar pakistani str. T13001]
          Length = 369

 Score = 38.5 bits (88), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 26/118 (22%), Positives = 58/118 (49%), Gaps = 5/118 (4%)

Query: 95  FESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL---FKWAVRQ 150
           ++++ +Q +I   G     K+   HI+   ++      +    L   R+L      AV+Q
Sbjct: 88  YKAFINQHVIPSIGMVTLHKLNVIHIQKCYKTAIDKGIANNSILLMHRILKSALNLAVKQ 147

Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD 208
             ++ NP    E PK++   I+ WT+E++++F +  S+ S+  + +   + +G+R  +
Sbjct: 148 NIISRNPADFAEIPKKEKTPIQTWTEEEVKKFLAH-SQESRYHIGYLLAITTGMRLGE 204


>gi|285019408|ref|YP_003377119.1| shufflon-specific DNA recombinase [Xanthomonas albilineans GPE
           PC73]
 gi|283474626|emb|CBA17125.1| putative shufflon-specific dna recombinase protein [Xanthomonas
           albilineans]
          Length = 364

 Score = 38.5 bits (88), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 54/247 (21%), Positives = 96/247 (38%), Gaps = 15/247 (6%)

Query: 92  RISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQE 151
           R S  +   ++I K  D     +  K  +     +  +P++    L  +  LF  A+++ 
Sbjct: 97  RYSLAALTPELIAKYRDDRLAGLDRKDAKGKPAPKPRSPNTVRLDLALLGHLFNVAIKEW 156

Query: 152 YVAI--NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF--EFLLYSGLRCS 207
            + +  NP  S+ RP       R  T+E+  +        S P L +     L +G+R S
Sbjct: 157 GIGLTYNPVQSIRRPAPSPGRDRRLTREEEIRLMVAVDAHSNPMLGWIVRIALETGMRSS 216

Query: 208 D--SCRAGVQHLQNNIFSIKTQKTG----TIITVELPDGFMKLL--AMTPIGKETFFINN 259
           +    R     L   +  ++  K        +TVE    F + L   + PI  +  F   
Sbjct: 217 EITGLRRSQVDLDRRVARLQETKNTMSRTVPLTVEATRLFREALNNPVRPIDTDLIFFGE 276

Query: 260 D--KQKMNATQFS-IWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTV 316
                K  A QF+ IW + K      +   H +R  + +   +AG +  E+ A  G K++
Sbjct: 277 PGRDNKRRAYQFNPIWMRIKKDAGLPDFRFHDLRHEAVSRFVEAGLSDQEVAAISGHKSM 336

Query: 317 DQAETYT 323
              + YT
Sbjct: 337 QMLKRYT 343


>gi|268319286|ref|YP_003292942.1| bacteriophage integrase [Lactobacillus johnsonii FI9785]
 gi|262397661|emb|CAX66675.1| bacteriophage integrase [Lactobacillus johnsonii FI9785]
          Length = 390

 Score = 38.1 bits (87), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 10/97 (10%)

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSV------ERPKRKTEGIRPWTKEDMQQFKSFWSE-G 189
           +     LF++ +R  YV+ NP   +       RP+R TE    +T++++ QF     E G
Sbjct: 138 INEFNALFEYGIRLNYVSENPLKRIIIPKKTSRPRRDTEH-NVYTRDELNQFLEVAKEYG 196

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSI 224
                 F+ L  +GLR S++     Q   L NN  S+
Sbjct: 197 LVQYTYFKLLSSTGLRKSEALALTWQDIDLNNNTLSV 233


>gi|30020683|ref|NP_832314.1| DNA integration/recombination/invertion protein [Bacillus cereus
           ATCC 14579]
 gi|31415821|ref|NP_852561.1| DNA integration/recombination/invertion protein [Bacillus phage
           phBC6A52]
 gi|229127965|ref|ZP_04256949.1| DNA integration/recombination/invertion protein [Bacillus cereus
           BDRD-Cer4]
 gi|29896235|gb|AAP09515.1| DNA integration/recombination/invertion protein [Bacillus cereus
           ATCC 14579]
 gi|228655527|gb|EEL11381.1| DNA integration/recombination/invertion protein [Bacillus cereus
           BDRD-Cer4]
          Length = 369

 Score = 38.1 bits (87), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 26/118 (22%), Positives = 58/118 (49%), Gaps = 5/118 (4%)

Query: 95  FESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL---FKWAVRQ 150
           ++++ +Q +I   G     K+   HI+   ++      +    L   R+L      AV+Q
Sbjct: 88  YKAFINQHVIPSIGMVTLHKLNVIHIQKCYKTAIDKGIANNSILLMHRILKSALNLAVKQ 147

Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD 208
             ++ NP    E PK++   I+ WT+E++++F +  S+ S+  + +   + +G+R  +
Sbjct: 148 NIISRNPADFAEIPKKEKTPIQTWTEEEVKKFLAH-SQESRYHIGYLLAITTGMRLGE 204


>gi|308271884|emb|CBX28492.1| hypothetical protein N47_G38160 [uncultured Desulfobacterium sp.]
          Length = 311

 Score = 38.1 bits (87), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 49/229 (21%), Positives = 101/229 (44%), Gaps = 19/229 (8%)

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER--PKRKTEGIRPWTKEDMQQFKS 184
           K +P+ A + L  ++ LF+ AV ++++  NP  +++     +K + I P  +ED+ +F  
Sbjct: 95  KKSPTQANKELKMIKRLFQHAVERDWLETNPAKNIKLLPVSKKRKYIPP--QEDIIKF-- 150

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE----LPDG 240
                 + R  F  ++Y+  R  +      + + ++   +KT+K       E    + + 
Sbjct: 151 -MVSAGKDRFYFLTIVYTLARMREINYLKWEDVYSDYLILKTRKARNSDLTERRIPINEI 209

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISAD 299
              +L   P   E  F  N+ +  +  +  +    K  +AG+ + S H +R + A+  A+
Sbjct: 210 LKYILEQLPKKGEYVFCQNNGKPYDCRKRLMAGICK--RAGIKRFSFHSLRHYGASKLAE 267

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
           AGA    + A  G       +TY +      LG+K +  ++S+     P
Sbjct: 268 AGAPLTAIQAILGHSRATTTDTYLQS-----LGMKKTEVMNSLTIKSPP 311


>gi|323486023|ref|ZP_08091354.1| phage integrase [Clostridium symbiosum WAL-14163]
 gi|323400590|gb|EGA92957.1| phage integrase [Clostridium symbiosum WAL-14163]
          Length = 359

 Score = 38.1 bits (87), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 19/72 (26%), Positives = 39/72 (54%), Gaps = 2/72 (2%)

Query: 138 TSMRVLFKWAVRQEYVAINPCLSV-ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196
             +  +  +AV    + +NPC +     K K + +  WT+++ ++F +  S+ S  +LAF
Sbjct: 137 NQLSAIMNYAVSHYRLPVNPCRAAGSMGKSKADEMNIWTQKEYERFSNAISKSSM-KLAF 195

Query: 197 EFLLYSGLRCSD 208
           + L Y+G+R  +
Sbjct: 196 DILFYTGMRSGE 207


>gi|270011279|gb|EFA07727.1| hypothetical protein TcasGA2_TC002205 [Tribolium castaneum]
          Length = 241

 Score = 38.1 bits (87), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 31/121 (25%), Positives = 51/121 (42%), Gaps = 13/121 (10%)

Query: 227 QKTGTIITVELPDGFMKLLAMTPIG--KETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284
           +K G +  V L +   + + + P       FFIN  K+K       I  K     A V K
Sbjct: 106 RKAGKLENVNLLELVRRYMEIRPTKTPHNRFFINYTKEKCTIQPVGI-HKIGGVPATVAK 164

Query: 285 ----------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIK 334
                     + H  R+ SA++ A+AGAT   +    GW++   AE Y +  +  ++ + 
Sbjct: 165 YLGLENASSYTGHCFRRSSASLLANAGATMERIKRHGGWRSTTVAEGYIEECENTKIKVA 224

Query: 335 N 335
           N
Sbjct: 225 N 225


>gi|270005006|gb|EFA01454.1| hypothetical protein TcasGA2_TC007000 [Tribolium castaneum]
          Length = 390

 Score = 38.1 bits (87), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 2/62 (3%)

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
           + H +R+ SAT+  DAGA    L    GW++   AETY   +  +   I+ + +IS+++ 
Sbjct: 255 TGHCLRRSSATLLVDAGADITALKRHGGWRSTTVAETYIDHS--LNNKIQTANKISNIIQ 312

Query: 345 SD 346
           S+
Sbjct: 313 SE 314


>gi|167762266|ref|ZP_02434393.1| hypothetical protein BACSTE_00619 [Bacteroides stercoris ATCC
           43183]
 gi|167699909|gb|EDS16488.1| hypothetical protein BACSTE_00619 [Bacteroides stercoris ATCC
           43183]
          Length = 373

 Score = 38.1 bits (87), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 88/217 (40%), Gaps = 23/217 (10%)

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-- 181
           ++RK   +SA  + ++ R       R   +  NP   +ER     E I P  KE + Q  
Sbjct: 153 KNRKLHINSAANYWSTFRASIHITYRDRKIKENPNGFLER----IETI-PTDKEHLSQDE 207

Query: 182 -FKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQ----NNIFSIKT--QKTGTI 232
             +   +  S P L  AF F   + LR SD  +   + +Q    + +  + T  QKT  I
Sbjct: 208 VIRLASTPCSAPALKRAFLFSCLTALRKSDIKKLTWEEIQPYGSDGVMYVTTRMQKTKDI 267

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290
           +   + +  ++L+  +P  +   F +  K  M       W K     AG+ K  S H  R
Sbjct: 268 VHNPISEEALELIGYSPDKRGKVFPDF-KDSMTQAPLKNWLK----DAGITKHISYHCSR 322

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
              A +  DAG +   +    G K V   E Y K +D
Sbjct: 323 HSFACLQLDAGTSIAVVQRYLGHKNVATTEVYAKISD 359


>gi|223043159|ref|ZP_03613206.1| tyrosine recombinase XerD [Staphylococcus capitis SK14]
 gi|314933674|ref|ZP_07841039.1| tyrosine recombinase XerD [Staphylococcus caprae C87]
 gi|222443370|gb|EEE49468.1| tyrosine recombinase XerD [Staphylococcus capitis SK14]
 gi|313653824|gb|EFS17581.1| tyrosine recombinase XerD [Staphylococcus caprae C87]
          Length = 295

 Score = 38.1 bits (87), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 52/251 (20%), Positives = 103/251 (41%), Gaps = 28/251 (11%)

Query: 95  FESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA 154
           +E Y ++      DF  R++  + +   ++  + + S A +F++++R   ++A+R+ Y A
Sbjct: 33  YEEYLEERKISHIDFVDRQVIQECLGHLIDLGQSSKSLA-RFISTIRSFHQFALRERYAA 91

Query: 155 INPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-------SEGSQPRLAFEFLLYSGLRCS 207
            +P + +E P  K E   P   E +Q+            + G + R   E L  +G+R S
Sbjct: 92  KDPTVLIETP--KYEKKLPDVLE-VQEVLDLLETPDLSKNNGYRDRTMLELLYATGMRVS 148

Query: 208 DSCRAGVQHLQNNIFSIKTQKTGTII-TVELPDGFMKLLA----------MTPIGKETFF 256
           +  +  V+ +   +  ++    G     V L D  ++ L           +        F
Sbjct: 149 EIIQLEVEDVNLMMGFVRVFGKGNKERIVPLGDAVIEYLTTYIETVRPQLLKQTVTHVLF 208

Query: 257 INNDKQKMNATQFSIW--FKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYG 312
           +N   + +  ++  IW   K    KA +NK+   H +R   AT   + GA    +    G
Sbjct: 209 LNMHGKPL--SRQGIWKMIKQNGIKANINKTLTPHTLRHSFATHLLENGADLRAVQEMLG 266

Query: 313 WKTVDQAETYT 323
              +   + YT
Sbjct: 267 HSDISTTQLYT 277


>gi|228908344|ref|ZP_04072189.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis IBL 200]
 gi|228851385|gb|EEM96194.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis IBL 200]
          Length = 369

 Score = 38.1 bits (87), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 26/118 (22%), Positives = 58/118 (49%), Gaps = 5/118 (4%)

Query: 95  FESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL---FKWAVRQ 150
           ++++ +Q +I   G     K+   HI+   ++      +    L   R+L      AV+Q
Sbjct: 88  YKAFINQHVIPSIGIVALHKLNVIHIQKCYKTAIDKGIANNSILLMHRILKSALNLAVKQ 147

Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD 208
             ++ NP    E PK++   I+ WT+E++++F +  S+ S+  + +   + +G+R  +
Sbjct: 148 NIISRNPADFAEIPKKEKTPIQTWTEEEVKKFLAH-SQESRYHIGYLLAITTGMRLGE 204


>gi|148379636|ref|YP_001254177.1| phage integrase [Clostridium botulinum A str. ATCC 3502]
 gi|237795099|ref|YP_002862651.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum Ba4 str. 657]
 gi|148289120|emb|CAL83214.1| phage integrase [Clostridium botulinum A str. ATCC 3502]
 gi|229262802|gb|ACQ53835.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum Ba4 str. 657]
          Length = 349

 Score = 38.1 bits (87), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 27/104 (25%), Positives = 51/104 (49%), Gaps = 9/104 (8%)

Query: 108 DFDYRKITTKHIR---SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV-ER 163
           D +   IT  +IR   + + S+ +  +        +  +F +A++   +  NP L     
Sbjct: 95  DMNVNNITPNNIRKWQNKLMSKDYKQTYLKAVNKQLNAIFNFAIKYYNLNSNPALKAGPM 154

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQP--RLAFEFLLYSGLR 205
            K+ +EG++ WT   ++++K F      P  +LAFE L ++GLR
Sbjct: 155 GKKDSEGMQFWT---LEEYKEFIKCVDNPMCKLAFEILFWTGLR 195


>gi|182417143|ref|ZP_02948516.1| integrase/recombinase, phage integrase family [Clostridium
           butyricum 5521]
 gi|237667184|ref|ZP_04527168.1| phage integrase [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182378985|gb|EDT76491.1| integrase/recombinase, phage integrase family [Clostridium
           butyricum 5521]
 gi|237655532|gb|EEP53088.1| phage integrase [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 332

 Score = 38.1 bits (87), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 7/91 (7%)

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPC--LSVER-PKRKTEGIRPWTKEDMQQFKSFW 186
           PS+    L S++  F+W  ++E +  NP   LS  R PKR  + +   T E++++ +   
Sbjct: 114 PSTVNNKLASLKAFFEWMEQEEIIPKNPARHLSGTRLPKRLRKSL---TIEELEKIR-LV 169

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217
            +  + R+  EFL  +G R S+  +A +  L
Sbjct: 170 CKDVRERVLIEFLFATGCRISEVVKANISDL 200


>gi|58580222|ref|YP_199238.1| phage integrase family site specific recombinase [Xanthomonas
           oryzae pv. oryzae KACC10331]
 gi|58424816|gb|AAW73853.1| site-specific recombinase, phage integrase family [Xanthomonas
           oryzae pv. oryzae KACC10331]
          Length = 400

 Score = 38.1 bits (87), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 62/277 (22%), Positives = 108/277 (38%), Gaps = 22/277 (7%)

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVN-SRISFESYFDQIIRKSGDFDYRKITTKHIRS 121
           SP K+P +     S+ R   H   L  N  + S  +   ++I K  D     +  K  + 
Sbjct: 109 SPTKRPASAD---SDAR---HAKPLMQNLGKYSLAALTPELIAKYRDDRLAGLDRKDAKG 162

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI--NPCLSVERPKRKTEGIRPWTKEDM 179
               +  +P++    L  +  LF  A+++  + +  NP  S+ RP       R  T+E+ 
Sbjct: 163 KPAPKPRSPNTVRLDLALLGHLFNVAIKEWGIGLTYNPVQSIRRPAPSPGRDRRLTREEE 222

Query: 180 QQFKSFWSEGSQPRLAF--EFLLYSGLRCSD--SCRAGVQHLQNNIFSIKTQKTG----T 231
            +  +     S P L +     L +G+R S+    R     L   +  ++  K       
Sbjct: 223 TRLMAAVDAHSNPMLGWIVRIALETGMRSSEITGLRRNQVDLDRRVVRLQETKNTMSRTV 282

Query: 232 IITVELPDGFMKLL--AMTPIGKETFFINND--KQKMNATQFS-IWFKAKATKAGVNKSA 286
            +TVE    F + L   + PI     F        K  A QF+ IW + K      +   
Sbjct: 283 PLTVEATRLFREALNNPVRPIDTNLIFFGEPGRDNKRRAYQFNPIWTRIKKDAGVPDFRF 342

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           H +R  + +   +AG +  E+ A  G K++   + YT
Sbjct: 343 HDLRHEAVSRFVEAGLSDQEVAAISGHKSMQMLKRYT 379


>gi|149916304|ref|ZP_01904824.1| site-specific recombinase, phage integrase family protein
           [Roseobacter sp. AzwK-3b]
 gi|149809758|gb|EDM69610.1| site-specific recombinase, phage integrase family protein
           [Roseobacter sp. AzwK-3b]
          Length = 363

 Score = 38.1 bits (87), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 51/238 (21%), Positives = 94/238 (39%), Gaps = 30/238 (12%)

Query: 110 DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAIN------PCLSVER 163
           D RK+T +     ++   + P S  + +  +R + + A    Y  I+      P L  + 
Sbjct: 117 DLRKLTKE-----MQDLGYAPGSVNRTVVILRGMLRRADDWGYCKIHSSLQKPPNLLPDH 171

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSE-GSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQ--N 219
           P+ +    R  ++E+ Q+ ++     G+ P  LA  FLLY+G R S+   A   H+    
Sbjct: 172 PRHE----RFLSREEAQRLQAVLQRRGATPVNLAILFLLYTGARRSEVLNADWAHVDFAR 227

Query: 220 NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE-----------TFFINNDKQKMNATQ 268
             + I   K G   TV L D  + +L      ++           T F N   ++     
Sbjct: 228 QEWRIPISKNGRPRTVILSDRAVDILEQARAYQQRHFVKQARSVSTVFANPQTRQPYHNI 287

Query: 269 FSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           +  W + +A     +   H +R   A+   +AG + +E+    G   +   + Y   A
Sbjct: 288 WETWKRVRAEADLTDVRLHDLRHSYASTLINAGVSIYEVQKLLGHTNITTTQRYAHLA 345


>gi|149276499|ref|ZP_01882643.1| site-specific recombinase [Pedobacter sp. BAL39]
 gi|149233019|gb|EDM38394.1| site-specific recombinase [Pedobacter sp. BAL39]
          Length = 292

 Score = 38.1 bits (87), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 60/267 (22%), Positives = 106/267 (39%), Gaps = 33/267 (12%)

Query: 86  SLAVNSRISFES-------YFDQIIRKSGDFDYRKITTKHIR---SGVESRKHTPSSAIQ 135
           +L+VNS  ++ S       YFD        +D +++ T  ++   S V      P +  +
Sbjct: 12  ALSVNSISAYISDVKKLFEYFDS---TGKSYDIQEVNTSDLKLFISWVNELGMLPVTQAR 68

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKSFWSEGSQ 191
            ++ ++  F +   ++ ++ +P  S+E P+   +       E++    Q      +EG +
Sbjct: 69  VISGIKSYFSFLSLEQLISSDPASSLETPRLNKKLPDTLNIEEINAMIQAIDHSKAEGLR 128

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG--FMKLLAM-- 247
            R   E L   GLR S+  +  + ++  N   IK    G    + +P G   +K + M  
Sbjct: 129 SRAMLEVLYGCGLRVSELIQMKISNIFINSEFIKVVGKGDKERI-IPIGSAALKYIMMYI 187

Query: 248 ------TPI--GKETF-FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATI 296
                  PI  G+E F F+N     +         K  A  AG+ K  S H  R   AT 
Sbjct: 188 NEVRIEVPIKKGQEDFVFLNRRGTALTRMLIFNMIKGLAKDAGIQKNISPHTFRHSFATH 247

Query: 297 SADAGATAHELMATYGWKTVDQAETYT 323
             + GA    +    G  ++   E YT
Sbjct: 248 LIEGGADLRAVQEMLGHSSITTTEIYT 274


>gi|192824211|ref|YP_001994852.1| gp35 [Mycobacterium phage Pukovnik]
 gi|190610441|gb|ACE79961.1| gp35 [Mycobacterium phage Pukovnik]
          Length = 377

 Score = 38.1 bits (87), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 48/223 (21%), Positives = 83/223 (37%), Gaps = 30/223 (13%)

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
           K  P++       +R +   AV  + +  NPC  +E+       +   T E++       
Sbjct: 136 KDYPTARRHAYNVLRAVMNTAVEDKLLTENPC-RIEQKTAAERDVEALTPEELDIVAGEV 194

Query: 187 SEGSQPRLAFEFLLYSGLRCSD-----------------------SCRAGVQHLQNNIFS 223
            E    R+A   L ++ LR  +                       + R G + +  N  +
Sbjct: 195 FE--HYRIAVYILAWTSLRFGELIELRRKDIDDDGETMLFRVRRGAARVGEKIVVGNTKT 252

Query: 224 IKTQKTGTII--TVELPDGFMKLLAMTPIGKETFFINN-DKQKMNATQFSIWFKAKATKA 280
           +++++  T+     E+    MK       G E   +    KQ+++ + F+   K    K 
Sbjct: 253 VRSKRPVTVPPHVAEMVREHMKDRTKMNKGPEALLVTTTQKQRLSKSAFTRSLKKGYRKI 312

Query: 281 G-VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           G  +   H +R   AT +A AGAT  ELM   G  T   A  Y
Sbjct: 313 GRTDLRVHDLRAVGATYAAQAGATTKELMVRLGHTTPRMAMKY 355


>gi|30063432|ref|NP_837603.1| putative integrase for prophage CP-933U [Shigella flexneri 2a str.
           2457T]
 gi|56480016|ref|NP_707880.2| putative integrase for prophage CP-933U [Shigella flexneri 2a str.
           301]
 gi|30041685|gb|AAP17412.1| putative integrase for prophage CP-933U [Shigella flexneri 2a str.
           2457T]
 gi|56383567|gb|AAN43587.2| putative integrase for prophage CP-933U [Shigella flexneri 2a str.
           301]
          Length = 281

 Score = 38.1 bits (87), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 36/159 (22%), Positives = 67/159 (42%), Gaps = 6/159 (3%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-KHTPSS 132
           L  ++  SA++  L+  ++  +  +  +++   G      I  +HIR  ++ R + + + 
Sbjct: 6   LWEKFLASAYYSDLSPRTQKDYLQHQKKLLAVFGKVPADSIKPEHIRRYMDKRGEQSKTQ 65

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
           A    +SM  ++ W   + YV  NPC  V + K K        KE    +++  S    P
Sbjct: 66  ANHEKSSMSRVYSWGYERGYVKANPCAGVSKFKAKNRERYVTDKE----YQAVLSVAPLP 121

Query: 193 R-LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
             +A E       R SD      + + N+   I+  KTG
Sbjct: 122 VFIAMEIAYLCAARVSDVLSLKWEQIGNDGIFIQQGKTG 160


>gi|95928522|ref|ZP_01311269.1| phage integrase [Desulfuromonas acetoxidans DSM 684]
 gi|95135312|gb|EAT16964.1| phage integrase [Desulfuromonas acetoxidans DSM 684]
          Length = 417

 Score = 38.1 bits (87), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 52/112 (46%), Gaps = 10/112 (8%)

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF-KS 184
           R+ + S+A Q L+ +  LF+ A+ Q  V  NPC  V RPK      R  + ++  +F K+
Sbjct: 172 RRISGSTAKQALSLLSKLFQCAIDQHLVDANPCDGVRRPKVNRSRERYLSGDEYPRFIKA 231

Query: 185 FWSEGSQPRL-AFEFLLYSGLRCSDS-----CRAGVQHLQNNIFSIKTQKTG 230
             S   +P+  A   L   GLR S+      C     HL +N   IK  K G
Sbjct: 232 TMSLIDRPQAKAIMILAVLGLRPSEVLGLAWCDV---HLIDNRIHIKQAKNG 280


>gi|229079787|ref|ZP_04212320.1| DNA integration/recombination/invertion protein [Bacillus cereus
           Rock4-2]
 gi|228703627|gb|EEL56080.1| DNA integration/recombination/invertion protein [Bacillus cereus
           Rock4-2]
          Length = 369

 Score = 38.1 bits (87), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 26/118 (22%), Positives = 58/118 (49%), Gaps = 5/118 (4%)

Query: 95  FESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL---FKWAVRQ 150
           ++++ +Q +I   G     K+   HI+   ++      +    L   R+L      AV+Q
Sbjct: 88  YKAFINQHVIPSIGMVALHKLNVIHIQKCYKTAIDKGIANNSILLMHRILKSALNLAVKQ 147

Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD 208
             ++ NP    E PK++   I+ WT+E++++F +  S+ S+  + +   + +G+R  +
Sbjct: 148 NIISRNPADFAEIPKKEKTPIQTWTEEEVKKFLAH-SQESRYHIGYLLAITTGMRLGE 204


>gi|284008137|emb|CBA74367.1| phage integrase [Arsenophonus nasoniae]
          Length = 338

 Score = 38.1 bits (87), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 73/160 (45%), Gaps = 15/160 (9%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
           +PP     R   G+  Y F+  +GR IRL        + A  S +       +Y+N   K
Sbjct: 13  MPP-----RVFRGRSAYEFKHPNGRTIRL------CALNADKSVVWSHY--EQYVND-EK 58

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
                + LI+++  SA +  L+ +++  ++ Y  ++I   G  +   I  +HIR  ++ R
Sbjct: 59  HIFNYESLINQFLCSADFIELSKDTQNDYQKYSKKVIPVFGKMNPDNIKPEHIRKYMDKR 118

Query: 127 K-HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165
              + + A +  + M  +F+W   +  V  NPC  V++ K
Sbjct: 119 GLKSRTQANREKSFMSRVFRWGYERGLVKNNPCKGVKQYK 158


>gi|218236017|ref|YP_002367298.1| DNA integration/recombination/invertion protein [Bacillus cereus
           B4264]
 gi|218163974|gb|ACK63966.1| site-specific recombinase, phage integrase family [Bacillus cereus
           B4264]
          Length = 369

 Score = 38.1 bits (87), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 26/118 (22%), Positives = 57/118 (48%), Gaps = 5/118 (4%)

Query: 95  FESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL---FKWAVRQ 150
           + ++ +Q +I   G     K+   HI+   ++      +    L   R+L      AV+Q
Sbjct: 88  YRAFINQHVIPSIGMVALHKLNVMHIQKCYKNAIDKGIANNSILLMHRILKSALNLAVKQ 147

Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD 208
             ++ NP    E PK++   I+ WT+E++++F +  S+ S+  + +   + +G+R  +
Sbjct: 148 NIISRNPADFAEIPKKEKTPIQTWTEEEVKKFLAH-SQESRYHIGYLLAITTGMRLGE 204


>gi|170730010|ref|YP_001775443.1| site-specific tyrosine recombinase XerC [Xylella fastidiosa M12]
 gi|167964803|gb|ACA11813.1| site-specific recombinase [Xylella fastidiosa M12]
          Length = 277

 Score = 38.1 bits (87), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 3/88 (3%)

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           R  +P S  + L++ R  + W V+  ++A+NP   +  PK   +  R    ++   F   
Sbjct: 46  RGLSPKSLQRRLSACRGFYAWLVKSGHIAVNPAAGLRAPKALRKLPRILDADEAVSFVQI 105

Query: 186 WSE---GSQPRLAFEFLLYSGLRCSDSC 210
            ++   G + R   E    SGLR S+ C
Sbjct: 106 PTDTPLGLRDRALLELFYSSGLRLSELC 133


>gi|71274748|ref|ZP_00651036.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella
           fastidiosa Dixon]
 gi|71901196|ref|ZP_00683299.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella
           fastidiosa Ann-1]
 gi|71164480|gb|EAO14194.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella
           fastidiosa Dixon]
 gi|71729040|gb|EAO31168.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella
           fastidiosa Ann-1]
          Length = 277

 Score = 38.1 bits (87), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 3/88 (3%)

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           R  +P S  + L++ R  + W V+  ++A+NP   +  PK   +  R    ++   F   
Sbjct: 46  RGLSPKSLQRRLSACRGFYAWLVKSGHIAVNPAAGLRAPKALRKLPRILDADEAVSFVQI 105

Query: 186 WSE---GSQPRLAFEFLLYSGLRCSDSC 210
            ++   G + R   E    SGLR S+ C
Sbjct: 106 PTDTPLGLRDRALLELFYSSGLRLSELC 133


>gi|284006600|emb|CBA71861.1| phage integrase [Arsenophonus nasoniae]
          Length = 297

 Score = 38.1 bits (87), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 29/130 (22%), Positives = 56/130 (43%), Gaps = 10/130 (7%)

Query: 110 DYRKITTKHIRSGVES--RKHTPSSAIQF-LTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
           D+ ++ T H+R  V    R+   ++++   L+S+R    W V Q  +  NP  ++  PK 
Sbjct: 44  DWAQLETSHVRMMVAKCRRQGLQAASLALRLSSLRSFLDWLVGQGLITANPAKTIRAPKN 103

Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQP-----RLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221
           K    +    +++ Q  +   + + P     R   E +  +GLR S+      QHL    
Sbjct: 104 KRHLPKNIDVDEVNQLLNI--DLADPLSVRDRTMLEVMYGAGLRLSELINLNCQHLDLQS 161

Query: 222 FSIKTQKTGT 231
             ++    G+
Sbjct: 162 GEVRVMGKGS 171


>gi|258538870|ref|YP_003173369.1| phage-related integrase [Lactobacillus rhamnosus Lc 705]
 gi|257150546|emb|CAR89518.1| Phage-related integrase [Lactobacillus rhamnosus Lc 705]
          Length = 383

 Score = 38.1 bits (87), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 47/201 (23%), Positives = 81/201 (40%), Gaps = 34/201 (16%)

Query: 43  FIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISF------- 95
           F+ A    LTG   +        KK   L    S +   A  GSL+ N  ++F       
Sbjct: 19  FVSAGTDELTGKKRRIHKRGFRDKKEAALA--ASRFTLDADAGSLSTNRSMTFKAVYLEW 76

Query: 96  ESYFDQIIRKS-----------------GDFDYRKITTKHIRSGVES-RKHTPSSAIQFL 137
           ++ +   +R+S                 G+    KITT  ++  V    K    +  ++L
Sbjct: 77  DAAYKNTVRESTYERTYIQIKKHVLPLFGNKPINKITTAQLQQAVNQWSKQVTRNYRRWL 136

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTE----GIRPWTKEDMQQFKSFWSEGSQPR 193
           T+   + ++A+R+ Y+  NP   V  PK K +        W K+++ +F S+     +P+
Sbjct: 137 TTASRILRFALRRGYINKNPADLVIIPKEKEQIGDVAANFWDKQELTRFFSYIDAKQEPQ 196

Query: 194 --LAFEFLLYSGLRCSDSCRA 212
               F  L + GLR  + C A
Sbjct: 197 KTALFRILAFGGLRRGE-CLA 216


>gi|85059134|ref|YP_454836.1| putative phage integrase [Sodalis glossinidius str. 'morsitans']
 gi|84779654|dbj|BAE74431.1| putative phage integrase [Sodalis glossinidius str. 'morsitans']
          Length = 281

 Score = 38.1 bits (87), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 39/196 (19%), Positives = 73/196 (37%), Gaps = 4/196 (2%)

Query: 36  PYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISF 95
           P   ES  +      +     K E + +  +KP T   L  ++  S ++  L   ++  +
Sbjct: 28  PTSSESITLTLIKDGIAAVWKKYEEVVNQARKPITFSQLWEKFISSTYFIELKPRTQQDY 87

Query: 96  ESYFDQIIRKSGDFDYRKITTKHIRSGVESRK-HTPSSAIQFLTSMRVLFKWAVRQEYVA 154
             +  ++    G+     I  +H+R  ++ R     + A   + SM  +++W   + YV 
Sbjct: 88  MQHQKKLFSVFGEMKADGIKPEHVREFMDKRGLQRKTQANHEMASMSRVYRWGYERGYVK 147

Query: 155 INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGV 214
            NPC  V + K      R     D +    + +     ++A E       R SD      
Sbjct: 148 ANPCAGVMKFKAVK---RDRHITDEEYLAIYRAADDIVKIAMEIAYLCAARLSDVLGMKW 204

Query: 215 QHLQNNIFSIKTQKTG 230
           Q +      I+  KTG
Sbjct: 205 QQITEQGIFIQQGKTG 220


>gi|160934351|ref|ZP_02081738.1| hypothetical protein CLOLEP_03222 [Clostridium leptum DSM 753]
 gi|156867024|gb|EDO60396.1| hypothetical protein CLOLEP_03222 [Clostridium leptum DSM 753]
          Length = 357

 Score = 38.1 bits (87), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 50/230 (21%), Positives = 89/230 (38%), Gaps = 40/230 (17%)

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV-ERPKRKTEGIRPWTKEDMQ 180
           G   + ++P         +  +F  AVR   +  NPC       K+K   +  WTKE+  
Sbjct: 118 GDNGKPYSPVYLKTIHNQLSAIFNHAVRYYNLKENPCQKAGSMGKKKNREMLFWTKEEYL 177

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSD----------------SCRAGVQHL--QNNIF 222
           +F     +      AFE L ++G+R  +                +     QHL  ++ I 
Sbjct: 178 KFADAMMDKPMSYYAFEMLYWTGIREGELLAITPADFDFEKRTVTINKSFQHLNGRDIIT 237

Query: 223 SIKTQKTGTIITVELP-------DGFMKLLAMTPIGKETFFINND--KQKMNATQFSIWF 273
           S KT+K+    T++LP         ++K+L    +    F +      ++MN        
Sbjct: 238 SPKTEKSNR--TIQLPKFLCDEMQDYLKMLYDVGLEDRMFPVTKSYLHREMNRG------ 289

Query: 274 KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
              A +AGV +   H +R    ++  D G +A  +    G +++D    Y
Sbjct: 290 ---AKEAGVKRIRIHDIRHSHVSLLIDMGFSATAIADRVGHESIDITYNY 336


>gi|227890200|ref|ZP_04008005.1| possible bacteriophage integrase [Lactobacillus johnsonii ATCC
           33200]
 gi|227849295|gb|EEJ59381.1| possible bacteriophage integrase [Lactobacillus johnsonii ATCC
           33200]
          Length = 391

 Score = 37.7 bits (86), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 8/81 (9%)

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSV------ERPKRKTEGIRPWTKEDMQQFKSFWSE-G 189
           +     LF++ +R  YV+ NP   +       RP+R TE    +T++++ QF     + G
Sbjct: 138 INEFNALFEYGIRLNYVSENPLKRIIIPKKTSRPRRDTEH-NVYTRDELNQFLEVAKDYG 196

Query: 190 SQPRLAFEFLLYSGLRCSDSC 210
             P   F+ L  +GLR S++ 
Sbjct: 197 LVPYTYFKLLSATGLRKSEAL 217


>gi|167946117|ref|ZP_02533191.1| site-specific tyrosine recombinase XerD [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 223

 Score = 37.7 bits (86), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 9/84 (10%)

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS---- 187
           S+ + L+ MR  +++AVR+  ++ +P   +E PKR +   R        +  S+W     
Sbjct: 61  SSARLLSCMRQFYQYAVRESLLSADPSAQIESPKRASPVTR--APSLSARLSSYWRPPTW 118

Query: 188 ---EGSQPRLAFEFLLYSGLRCSD 208
              +G + R   E L  +GLR S+
Sbjct: 119 AILQGVRDRTMLELLYATGLRVSE 142


>gi|116629539|ref|YP_814711.1| integrase [Lactobacillus gasseri ATCC 33323]
 gi|238852689|ref|ZP_04643099.1| tyrosine recombinase XerD [Lactobacillus gasseri 202-4]
 gi|311110818|ref|ZP_07712215.1| tyrosine recombinase XerD [Lactobacillus gasseri MV-22]
 gi|116095121|gb|ABJ60273.1| tyrosine recombinase XerD subunit [Lactobacillus gasseri ATCC
           33323]
 gi|238834835|gb|EEQ27062.1| tyrosine recombinase XerD [Lactobacillus gasseri 202-4]
 gi|311065972|gb|EFQ46312.1| tyrosine recombinase XerD [Lactobacillus gasseri MV-22]
          Length = 302

 Score = 37.7 bits (86), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 52/271 (19%), Positives = 111/271 (40%), Gaps = 28/271 (10%)

Query: 89  VNSRISFESYFDQIIRK---SGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFK 145
           ++ R   E Y D +  +   S + DY  +      +  + +    +S  + ++S+R  ++
Sbjct: 30  ISYRTDLEEYLDYLQDQNETSWEVDY--LVVDAFLATQKDKGKATTSISRMISSLRKFYQ 87

Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLAFEFLLY 201
           W +RQ+ +  +P + ++ PK +       ++E++ +  +        G + R   E L  
Sbjct: 88  WLLRQDIIERDPLVKIDSPKSERRLPTALSEEEVDKLLAAPDTNTPLGIRDRAMLEVLYA 147

Query: 202 SGLRCSD--SCRAGVQHLQNNIFSI--KTQKTGTIITVELPDGFM-------KLLAMTPI 250
           +G+R S+  + R G  H    I  +  K  K   +   E+   ++       +   +   
Sbjct: 148 TGMRVSELINLRTGDIHADLKIIRVLGKGSKERLVPITEVALSWLEKYQTDVRDAQVLKS 207

Query: 251 GK--ETFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSA--HGVRKFSATISADAGATA 304
           G+  +  F+NN   ++  T+ ++W K K      G+ K+   H +R   AT   + GA  
Sbjct: 208 GQFTDVIFLNNHGHQL--TRQAVWQKIKKYCQLIGITKNVTPHTLRHTFATHLLENGADL 265

Query: 305 HELMATYGWKTVDQAETYTKGADRIRLGIKN 335
             +    G   +   + YT    +  L + N
Sbjct: 266 RVVQEILGHSDITTTQIYTNLTQKHILEVYN 296


>gi|298484751|ref|ZP_07002852.1| predicted peptidase [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
 gi|298160720|gb|EFI01740.1| predicted peptidase [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
          Length = 731

 Score = 37.7 bits (86), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 57/240 (23%), Positives = 93/240 (38%), Gaps = 20/240 (8%)

Query: 75  ISEYRKSAHWGSLAVNSRI---SFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
           IS+Y +  H    A+N+R+   S ES   Q   ++   D   I   H+R  +ES KH  S
Sbjct: 145 ISDYLQRQHMP--AINARLFSDSLESDLKQYAFQNNRSDTLAII-GHLRR-IESNKHGVS 200

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           + + F T    L +W + Q +   N   S  R   +   +  W     +           
Sbjct: 201 AILPFKTKSSDLDEWLIDQVFSDENQTTSSYRSTLR--ALSHWLAAQEKPGLCDPDYLHS 258

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA-MTPI 250
             L  + L +S L     C A +QH++N     K +      T  +PD    L++    I
Sbjct: 259 HELTGDVLKFSCLPGRHQCSAALQHMRNYDLGSKVRLKKQRDTRNIPDEDQTLISHYQKI 318

Query: 251 GKETFFINNDK--QKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELM 308
             +   I N K  +K N        +    +  V+K A  +R FSA +  +   +   L+
Sbjct: 319 ANDALVIKNSKAGKKTN--------RDPHGRTSVDKYASVLRSFSAWLKEEGKGSLSTLL 370


>gi|289191137|dbj|BAI77471.1| PsvA protein [Pseudomonas syringae pv. myricae]
          Length = 731

 Score = 37.7 bits (86), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 57/240 (23%), Positives = 93/240 (38%), Gaps = 20/240 (8%)

Query: 75  ISEYRKSAHWGSLAVNSRI---SFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
           IS+Y +  H    A+N+R+   S ES   Q   ++   D   I   H+R  +ES KH  S
Sbjct: 145 ISDYLQRQHMP--AINARLFSDSLESDLKQYAFQNNRSDTLAII-GHLRR-IESNKHGVS 200

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           + + F T    L +W + Q +   N   S  R   +   +  W     +           
Sbjct: 201 AILPFKTKSSDLDEWLIDQVFSDENQTTSSYRSTLR--ALSHWLAAQEKPGLCDPDYLHS 258

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA-MTPI 250
             L  + L +S L     C A +QH++N     K +      T  +PD    L++    I
Sbjct: 259 HELTEDVLKFSCLPGRHQCSAALQHMRNYDLGSKVRLKKQRDTRNIPDEDQTLISHYQKI 318

Query: 251 GKETFFINNDK--QKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELM 308
             +   I N K  +K N        +    +  V+K A  +R FSA +  +   +   L+
Sbjct: 319 ANDALVIKNSKAGKKTN--------RDPHGRTSVDKYASVLRSFSAWLKEEGKGSLSTLL 370


>gi|296503148|ref|YP_003664848.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis BMB171]
 gi|296324200|gb|ADH07128.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis BMB171]
          Length = 369

 Score = 37.7 bits (86), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 26/118 (22%), Positives = 58/118 (49%), Gaps = 5/118 (4%)

Query: 95  FESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL---FKWAVRQ 150
           ++++ +Q +I   G     K+   HI+   ++      +    L   R+L      AV+Q
Sbjct: 88  YKAFINQHVIPSIGMVALHKLNVIHIQKCYKTAIDKGIANNSILLMHRILKSALNLAVKQ 147

Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD 208
             ++ NP    E PK++   I+ WT+E++++F +  S+ S+  + +   + +G+R  +
Sbjct: 148 NIISRNPTDFAEIPKKEKTPIQTWTEEEVKKFLAH-SQESRYHIGYLLAITTGMRLGE 204


>gi|270014460|gb|EFA10908.1| hypothetical protein TcasGA2_TC001734 [Tribolium castaneum]
          Length = 1600

 Score = 37.7 bits (86), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 2/62 (3%)

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
           + H +R+ SAT+  DAGA    L    GW++   AETY   +  +   I+ + +IS+++ 
Sbjct: 255 TGHCLRRSSATLLVDAGADITALKRHGGWRSTTVAETYIDHS--LNNKIQTANKISNIIQ 312

Query: 345 SD 346
           S+
Sbjct: 313 SE 314


>gi|6472619|dbj|BAA87062.1| ORF3 [Pseudomonas syringae]
          Length = 731

 Score = 37.7 bits (86), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 57/240 (23%), Positives = 93/240 (38%), Gaps = 20/240 (8%)

Query: 75  ISEYRKSAHWGSLAVNSRI---SFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
           IS+Y +  H    A+N+R+   S ES   Q   ++   D   I   H+R  +ES KH  S
Sbjct: 145 ISDYLQRQHMP--AINARLFSDSLESDLKQYAFQNNRSDTLAII-GHLRR-IESNKHGVS 200

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           + + F T    L +W + Q +   N   S  R   +   +  W     +           
Sbjct: 201 AILPFKTKSSDLDEWLIDQVFSDENQTTSSYRSTLR--ALSHWLAAQEKPGLCDPDYLHS 258

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA-MTPI 250
             L  + L +S L     C A +QH++N     K +      T  +PD    L++    I
Sbjct: 259 HELTEDVLKFSCLPGRHQCSAALQHMRNYDLGSKVRLKKQRDTRNIPDEDQTLISHYQKI 318

Query: 251 GKETFFINNDK--QKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELM 308
             +   I N K  +K N        +    +  V+K A  +R FSA +  +   +   L+
Sbjct: 319 ANDALVIKNSKAGKKTN--------RDPHGRTSVDKYASVLRSFSAWLKEEGKGSLSTLL 370


>gi|259416936|ref|ZP_05740856.1| putative phage integrase [Silicibacter sp. TrichCH4B]
 gi|259348375|gb|EEW60152.1| putative phage integrase [Silicibacter sp. TrichCH4B]
          Length = 507

 Score = 37.7 bits (86), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 57/279 (20%), Positives = 109/279 (39%), Gaps = 29/279 (10%)

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD---FDYRKITTKHIRSGV 123
           + + L  L++ Y  +  W S  + S+ + E      IR SG+    + +K     +   +
Sbjct: 214 QESQLSNLLASYMLAKKWDSRKIKSKTTAERQIKAFIRSSGNPCVTEVKKSMAYDLAREL 273

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC--LSVERPKRKTEGIRPWTKEDMQQ 181
           E+   + S     +++   +  W   +  +  NP   L++     KT+  RP+   +  Q
Sbjct: 274 EAEGKSNSLIRSTISAASAMLTWCELEGTIDANPLVHLNLSDFGTKTKHYRPF---EPAQ 330

Query: 182 FKSFWSEG--SQPRLAFEFLLYSGLRCSDSC---------RAGVQHLQNNIFSIKTQKTG 230
             S ++     Q RL  E L+ +G+R  ++          R G+++   +   +K + + 
Sbjct: 331 LHSLFAMKMPEQERLLLEILVTTGMRLDEAALLTWDQVKERNGIRYFDLSDAIVKNKASA 390

Query: 231 TIITVELPDGFMKLLAMTPIGKETFF---INNDKQKMN-ATQFSIWFKAKATKAGVNKSA 286
            +  V LPD     L + P G    F   ++ D +  N A++       K      ++  
Sbjct: 391 RL--VALPD----CLTLPPQGTGRLFDYTLDADGKASNRASRVLGGLIKKVPNKHKSQVL 444

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           H +R     +  DAG +        G    D A TY  G
Sbjct: 445 HSLRGTLKDLLRDAGVSKETNDYITGHSGSDVASTYGSG 483


>gi|254515505|ref|ZP_05127565.1| tyrosine recombinase XerC [gamma proteobacterium NOR5-3]
 gi|219675227|gb|EED31593.1| tyrosine recombinase XerC [gamma proteobacterium NOR5-3]
          Length = 311

 Score = 37.7 bits (86), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 52/235 (22%), Positives = 101/235 (42%), Gaps = 24/235 (10%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT- 129
           L++L S  R S+H  +       SFE +  Q    +G  D   +   H+R  +     T 
Sbjct: 19  LEYLRSVRRLSSHTVTAYRRDLDSFEDFCQQH-SVTGCSD---VQESHVRQWLAQGHRTG 74

Query: 130 --PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
             P+S  + L+++R  F+W         NP L+V+ P+++ +   P T E  Q      +
Sbjct: 75  LAPNSLQRRLSALRAYFQWESSDTGQRRNPALAVQAPRKRRK--LPGTLEADQVGVYLRA 132

Query: 188 EGSQP----RLAFEFLLY-SGLRCSDSCRAGVQHLQ--NNIFSI--KTQKTGTI----IT 234
           + + P     LA   LLY SGLR ++     +  +    ++ S+  K  KT T+    I 
Sbjct: 133 DDNDPLQLRDLAMAELLYSSGLRLAELRAVNIHDIDRSQSLISVTGKGSKTRTVPVGRIA 192

Query: 235 VELPDGFM--KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAH 287
           +E  D ++  +    +   ++  F++   ++++        +  A + G+ +  H
Sbjct: 193 IEAIDAYLPHRPTPTSAADEQALFVSGRGRRISERSIQARIQLLAQRNGLGRDVH 247


>gi|237712751|ref|ZP_04543232.1| integrase [Bacteroides sp. D1]
 gi|262406796|ref|ZP_06083345.1| integrase [Bacteroides sp. 2_1_22]
 gi|294645845|ref|ZP_06723527.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294807491|ref|ZP_06766290.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
 gi|298484331|ref|ZP_07002493.1| integrase [Bacteroides sp. D22]
 gi|229447202|gb|EEO52993.1| integrase [Bacteroides sp. D1]
 gi|262355499|gb|EEZ04590.1| integrase [Bacteroides sp. 2_1_22]
 gi|292638811|gb|EFF57147.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294445307|gb|EFG13975.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
 gi|295087263|emb|CBK68786.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A]
 gi|298269521|gb|EFI11120.1| integrase [Bacteroides sp. D22]
          Length = 396

 Score = 37.7 bits (86), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 68/308 (22%), Positives = 113/308 (36%), Gaps = 49/308 (15%)

Query: 36  PYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISF 95
           P  + S+F+  +   +  S  K     S R+   +   L+ E++K   +  L       F
Sbjct: 101 PLSNGSSFLTFFKEEVANSLLKE----STRQNHLSTLELLQEFKKEILFTDLT----FEF 152

Query: 96  ESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI 155
            S FD  ++  G          H+ +  +  KH           ++     A+ +EY+ I
Sbjct: 153 VSSFDNHLQSKG---------YHLNTIAKHMKH-----------LKRYINVAINKEYMDI 192

Query: 156 NPCLSVERPKRKTEGIRP-WTKEDMQQFKSFWSEGSQPRL-----AFEFLLYSGLRCSD- 208
                 +   +  EG       E++ +F++    G   RL     AF F  Y+GLR SD 
Sbjct: 193 QKYAFRKYKIKSIEGSHTHLAPEELYRFENLQLTGRYTRLQKTKDAFLFCCYAGLRYSDF 252

Query: 209 ---SCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM------KLLAMTPIGKETFFINN 259
              +    V+  Q      K+ KTG  I V LP   +      ++L       ++FF   
Sbjct: 253 TSLTSANIVEFHQETWIIYKSVKTG--IEVRLPLYLLFEGKGIEILQRYKDDLDSFFKLK 310

Query: 260 DKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
           D   +N     +   A   K     S H  R  +AT+   +GA    +    G K+V   
Sbjct: 311 DNSNINK---ELNLLAGLAKIDKRVSFHTARHTNATLLLYSGANITTVQKLLGHKSVKTT 367

Query: 320 ETYTKGAD 327
           + Y    D
Sbjct: 368 QVYANIMD 375


>gi|320195935|gb|EFW70559.1| Phage integrase [Escherichia coli WV_060327]
          Length = 303

 Score = 37.7 bits (86), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 44/222 (19%), Positives = 87/222 (39%), Gaps = 20/222 (9%)

Query: 93  ISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQ 150
           + + S    I RK  D     I+TK + + + +   +   +SA    +++  +F+ A+ +
Sbjct: 44  LDYASKIRAIRRKLPDKPLADISTKEVAAMLNTYVAEGKAASAKLIRSTLVDVFREAIAE 103

Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210
            +VA NP  +    K +    R    E +    +        RLA +  + +G R  D C
Sbjct: 104 GHVATNPVTATRTAKSEVRRSRLTANEYVAIHHAAEPLPIWLRLAMDLAVVTGQRVGDLC 163

Query: 211 RAGVQHLQNNIFSIKTQKTGT-----------IITVELPDGFMKLLAMTPIGKETFFINN 259
           +     + +N   I+  KTG             + + L D   K   ++  G ET   + 
Sbjct: 164 KMKWSDINDNHLHIEQGKTGAKLAIPLTLTIDALNISLADTLQKCREVS--GSETIIAST 221

Query: 260 DKQKMNATQFSIWFKAKATKAGVN-----KSAHGVRKFSATI 296
             + ++    S +F      +G++      + H +R  SA +
Sbjct: 222 HHEPLSPKTVSKYFTKARNASGLSFDGDPPTFHELRSLSARL 263


>gi|110806562|ref|YP_690082.1| putative integrase [Shigella flexneri 5 str. 8401]
 gi|110616110|gb|ABF04777.1| putative integrase [Shigella flexneri 5 str. 8401]
          Length = 319

 Score = 37.7 bits (86), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 32/145 (22%), Positives = 60/145 (41%), Gaps = 2/145 (1%)

Query: 93  ISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQ 150
           I++ S    I R   D     ITTK I + +     +   +SA    +++   F+ A+ +
Sbjct: 100 INYMSKIKAIRRGLPDAPLEDITTKEIAAMLNGYIDEGKAASAKLIRSTLSDAFREAIAE 159

Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210
            ++  NP  +    K +    R    E ++ +++  S     RLA E  + +G R  D C
Sbjct: 160 GHITTNPVAATRAAKSEVRRSRLTADEYLKIYQAAESSPCWLRLAMELAVVTGQRVGDLC 219

Query: 211 RAGVQHLQNNIFSIKTQKTGTIITV 235
                 + +    ++  KTG  I +
Sbjct: 220 EMKWSDIVDGYLYVEQSKTGVKIAI 244


>gi|257870365|ref|ZP_05650018.1| integrase/recombinase [Enterococcus gallinarum EG2]
 gi|257804529|gb|EEV33351.1| integrase/recombinase [Enterococcus gallinarum EG2]
          Length = 320

 Score = 37.7 bits (86), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 57/245 (23%), Positives = 100/245 (40%), Gaps = 22/245 (8%)

Query: 97  SYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMR----VLFKWAVRQEY 152
           + F + +RKS    +  +TT  IR  + +R+     +   L   R      FKW   +EY
Sbjct: 72  NLFMRSVRKS----FSDVTTNDIRLFIANREMIDRVSKGTLARERGCIVRFFKWLCNEEY 127

Query: 153 VAINPCLSVER---PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDS 209
           +A +P   VE    PKR+ +    +++ ++++ +S  +  S+  L  E LL +G R S+ 
Sbjct: 128 IAKDPGARVENIKVPKRRKQ---EFSELEVEKLRS-ATANSKEALIIELLLSTGCRVSEL 183

Query: 210 CRAGVQHLQNNIFSI----KTQKTGTI-ITVELPDGFMKLLAMTP-IGKETFFINNDKQK 263
                +       SI    K  K  T+ +  +        L   P I    FF     ++
Sbjct: 184 VSLNFRDYDQENDSITVIGKGNKQRTLYLNAKAKMALNHYLKDVPHITGPLFFGQTVGKE 243

Query: 264 MNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           M +       K    +A V N   H  R+ +AT++   G     +M   G +++D    Y
Sbjct: 244 MTSAGVQKLVKRLGNRAEVANVHPHRFRRTAATLARRHGMPIELVMNFLGHESIDTTLKY 303

Query: 323 TKGAD 327
           +   D
Sbjct: 304 SMIGD 308


>gi|41179288|ref|NP_958506.1| putative integrase [Lactobacillus prophage Lj928]
 gi|42519337|ref|NP_965267.1| Lj928 prophage integrase [Lactobacillus johnsonii NCC 533]
 gi|38731417|gb|AAR27347.1| putative integrase [Lactobacillus prophage Lj928]
 gi|41583625|gb|AAS09233.1| Lj928 prophage integrase [Lactobacillus prophage Lj928]
          Length = 391

 Score = 37.7 bits (86), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 8/81 (9%)

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSV------ERPKRKTEGIRPWTKEDMQQFKSFWSE-G 189
           +     LF++ +R  YV+ NP   +       RP+R TE    +T++++ QF     + G
Sbjct: 138 INEFNALFEYGIRLNYVSENPLKRIIIPKKTSRPRRDTEH-NVYTQDELNQFLEVAKDYG 196

Query: 190 SQPRLAFEFLLYSGLRCSDSC 210
             P   F+ L  +GLR S++ 
Sbjct: 197 LVPYTYFKLLSATGLRKSEAL 217


>gi|157265417|ref|YP_001467975.1| phage XerD-like integrase [Thermus phage P74-26]
 gi|156905312|gb|ABU96955.1| phage XerD-like integrase [Thermus phage P74-26]
          Length = 327

 Score = 37.7 bits (86), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 45/201 (22%), Positives = 80/201 (39%), Gaps = 18/201 (8%)

Query: 116 TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK-------- 167
           T+++   V  +   P++   +  ++R    W +  EY+  NP    +RPK +        
Sbjct: 87  TRNLVVEVLDKPVAPATLANYDRALRGFVNWLIGVEYLEHNPFKGRKRPKEEFYLKDVLT 146

Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227
            + I+   K  M+  +  +   S   LA    L SGLR ++ CR  V  +  +  +++  
Sbjct: 147 LDEIKALFKAAMRDPRYRYRNASILALA----LGSGLRAAEICRLQVADILWDEMAVRVH 202

Query: 228 -KTG---TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
            KTG     +T E        L         +   +  + + +   S W K +A  AG+N
Sbjct: 203 GKTGHGVVPVTRETLRYLRLYLDRERKATSPYLFVHRNRPLTSEVLSHWIKRQAKVAGIN 262

Query: 284 KSA--HGVRKFSATISADAGA 302
           K    H +R   AT    +G 
Sbjct: 263 KKVGMHLLRHTFATNYLKSGG 283


>gi|89091996|ref|ZP_01164951.1| tyrosine recombinase XerD [Oceanospirillum sp. MED92]
 gi|89083731|gb|EAR62948.1| tyrosine recombinase XerD [Oceanospirillum sp. MED92]
          Length = 306

 Score = 37.7 bits (86), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 47/214 (21%), Positives = 86/214 (40%), Gaps = 19/214 (8%)

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           SS  + L+ +R  +++ +R+E ++ +P L ++ PK+     +  T+ +++       + S
Sbjct: 79  SSTSRMLSCLRGFYRYLLREEMISEDPLLLIDSPKKGRPLPKTLTESEVELLLDA-PDLS 137

Query: 191 QP-----RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-KTGTIITVELPD----- 239
            P     R   E L  +GLR S+     +  +  N   ++   K G    V L +     
Sbjct: 138 DPVQYRDRAMLEVLYATGLRVSELVALRLHEINLNQGVLRVMGKGGKERLVPLGEEAIHW 197

Query: 240 -----GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292
                G ++    T    +  F +   Q+M    F    K  A  AG++K  S H +R  
Sbjct: 198 VMRYMGEVRPALFTHDVSDVLFPSRRGQQMTRQTFWHRIKRHALTAGIDKTLSPHVLRHA 257

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            AT   + GA    +    G   +   + YT  A
Sbjct: 258 FATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA 291


>gi|326800846|ref|YP_004318665.1| integrase family protein [Sphingobacterium sp. 21]
 gi|326551610|gb|ADZ79995.1| integrase family protein [Sphingobacterium sp. 21]
          Length = 392

 Score = 37.7 bits (86), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 57/146 (39%), Gaps = 13/146 (8%)

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT---GTIITVELPDGFMKLLAMTPIGK 252
           F F   +G+R SDS R     +  N  + K +KT   G   T+ LP   + L+     G+
Sbjct: 249 FLFSCLTGVRISDSHRLHRNMIVGNKLTFKMKKTERYGRTATIPLPKAALDLVE----GQ 304

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMAT 310
           E +       K      + + K  A  AG+ K+   H  R    TI  + G     L   
Sbjct: 305 EGYLFT----KFADKTINEYLKVIAVIAGIEKNLTYHCARDTFGTIFIELGGDIKSLCDI 360

Query: 311 YGWKTVDQAETYTKGADRIRLGIKNS 336
            G       E Y K +D+ +  + N+
Sbjct: 361 MGHSDTRITEIYLKMSDQRKQNLMNN 386


>gi|294617989|ref|ZP_06697594.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium E1679]
 gi|291595798|gb|EFF27086.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium E1679]
          Length = 381

 Score = 37.7 bits (86), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 64/131 (48%), Gaps = 13/131 (9%)

Query: 91  SRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVES-RKHTPSSAIQFLTSMRVLFKWAV 148
           +++  E  F++ I+ K G F  ++IT KH++  +    K T    +   T  R+ FK+A+
Sbjct: 88  TQLKIEIKFNKWILPKYGKFRIKEITVKHVQKILNQWAKMTDQYKVLHSTVSRI-FKYAM 146

Query: 149 RQEYVAINPCLSVERPKRKTE----GIRPWTKEDMQ-QFKSFWSEGSQPRLAFE-----F 198
               +  NPC  V  P R  E     ++ +++  ++  F+   S+ S  R  ++     F
Sbjct: 147 TLGLITKNPCELVIMPNRNVEKKKDTVKIYSRNQLEILFQYLESKRSTYRADYDKTLLRF 206

Query: 199 LLYSGLRCSDS 209
           L +SG R S++
Sbjct: 207 LFFSGCRISEA 217


>gi|253690334|ref|YP_003019524.1| tyrosine recombinase XerC [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251756912|gb|ACT14988.1| tyrosine recombinase XerC [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 311

 Score = 37.7 bits (86), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 45/206 (21%), Positives = 80/206 (38%), Gaps = 26/206 (12%)

Query: 102 IIRKSGDFDYRKITTKHIRSGVESRK----HTPSSAIQFLTSMRVLFKWAVRQEYVAINP 157
           I+  +G  D+RK+    +RS V   K    H+ S A++ L+++R    W V +  +  NP
Sbjct: 51  ILSAAGVVDWRKLDAAGVRSVVSRSKRDGLHSGSLALR-LSALRSFLDWMVSRGVLTANP 109

Query: 158 CLSVERPKRKTEGIRPWTKE-DMQQF------KSFWSEGSQPRLAFEFLLYSGLRCSDSC 210
              +  P+      RP  K  D+ +               + R   E +  +GLR ++  
Sbjct: 110 AKGISTPRAG----RPLPKNMDVDEMDRLLDIDLDDPLAVRDRTMLEVMYGAGLRLAELV 165

Query: 211 RAGVQHLQNNIFSIKTQKTGTIITVELPDG------FMKLLAMTPI---GKETFFINNDK 261
               QH+      +     G+    +LP G        + LA+  +     +  FI+N  
Sbjct: 166 GMDCQHIDLASGEVWVMGKGS-KERKLPIGKTAVTWLERWLALRELFGPQDDAVFISNQG 224

Query: 262 QKMNATQFSIWFKAKATKAGVNKSAH 287
           ++++       F     K GVN   H
Sbjct: 225 RRISMRNVQKRFAEWGIKQGVNSHVH 250


>gi|227431825|ref|ZP_03913850.1| bacteriophage integrase [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
 gi|227352415|gb|EEJ42616.1| bacteriophage integrase [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
          Length = 373

 Score = 37.7 bits (86), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 44/204 (21%), Positives = 81/204 (39%), Gaps = 32/204 (15%)

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS--------EGSQP 192
           R L   AVR + + ++P   +E PK + +  +P    ++ +FK+F             Q 
Sbjct: 139 RRLLNIAVRMDMIPVDPFTKIEMPKERRQVNKPKQFMEVDEFKAFVDVLDNQYKYMNQQA 198

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTG------TII----------TV 235
                  +++G+R  +      QH+  N   I   Q  G      T I          T+
Sbjct: 199 YTLLRLAVFTGMRTEEILALQWQHIDFNGGYISIVQALGRGLAGSTYIKEPKSQTSRRTL 258

Query: 236 ELPDGFMKLLA----MTPIGK-ETFFINNDKQKMNATQFSIWFKAKATKAG--VNKSAHG 288
           ++ +  M +LA     T   K + +   N+   +   + + W ++ + K G  V  S H 
Sbjct: 259 KIENKMMVVLADWFEATGYNKSDDYVFQNEGHTLQTIRPNKWLRSVSDKYGVAVGLSMHK 318

Query: 289 VRKFSATISADAGATAHELMATYG 312
           +R   AT++ D GA   ++    G
Sbjct: 319 LRHTWATLAIDQGANIKQVQTYLG 342


>gi|157265299|ref|YP_001467858.1| XerD-like integrase [Thermus phage P23-45]
 gi|156905194|gb|ABU96838.1| XerD-like integrase [Thermus phage P23-45]
          Length = 327

 Score = 37.7 bits (86), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 45/201 (22%), Positives = 80/201 (39%), Gaps = 18/201 (8%)

Query: 116 TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK-------- 167
           T+++   V  +   P++   +  ++R    W +  EY+  NP    +RPK +        
Sbjct: 87  TRNLVVEVLDKPVAPATLANYDRALRGFVNWLIGVEYLEHNPFKGRKRPKEEFYLKDVLT 146

Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227
            + I+   K  M+  +  +   S   LA    L SGLR ++ CR  V  +  +  +++  
Sbjct: 147 LDEIKALFKAAMRDPRYRYRNASILALA----LGSGLRAAEICRLQVADILWDEMAVRVH 202

Query: 228 -KTG---TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
            KTG     +T E        L         +   +  + + +   S W K +A  AG+N
Sbjct: 203 GKTGHGVVPVTRETLRYLRLYLDRERKATSPYLFVHRNRPLTSEVLSHWIKRQAKVAGIN 262

Query: 284 KSA--HGVRKFSATISADAGA 302
           K    H +R   AT    +G 
Sbjct: 263 KKVGMHLLRHTFATNYLKSGG 283


>gi|121535764|ref|ZP_01667566.1| tyrosine recombinase XerD [Thermosinus carboxydivorans Nor1]
 gi|121305663|gb|EAX46603.1| tyrosine recombinase XerD [Thermosinus carboxydivorans Nor1]
          Length = 295

 Score = 37.7 bits (86), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 43/233 (18%), Positives = 94/233 (40%), Gaps = 21/233 (9%)

Query: 110 DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
           D  + T  +  + ++S+    S+  + L +++  +++ VR+ Y+  +P  ++E PK + +
Sbjct: 47  DSNRNTILNYLNNLQSKGRAVSTISRNLAAIKSFYQYLVRERYIDKDPAANLESPKLEKK 106

Query: 170 GIRPWT----KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225
             +  +    +E ++Q  S    G + +   E L  +G+R S+     +  +  ++  IK
Sbjct: 107 LPKILSIAEVEELLKQPNSLLPTGLRDKAMLELLYATGIRVSELISLNITDVNLDMGYIK 166

Query: 226 TQKTGT-------------IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW 272
               G               +   +  G  KL  +    +   F+N+   ++    F   
Sbjct: 167 CYGKGAKERIVPLGSIAAKCVQEYIAKGRPKL--VRTYDEPALFVNHHGNRLTRQGFWKI 224

Query: 273 FKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
            K  A +A + K  + H +R   AT   + GA    +    G   +   + YT
Sbjct: 225 IKKYAQEANITKEITPHTLRHSFATHLLENGADLRSVQEMLGHADISTTQIYT 277


>gi|319778943|ref|YP_004129856.1| Tyrosine recombinase XerC [Taylorella equigenitalis MCE9]
 gi|317108967|gb|ADU91713.1| Tyrosine recombinase XerC [Taylorella equigenitalis MCE9]
          Length = 315

 Score = 37.7 bits (86), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 28/117 (23%), Positives = 50/117 (42%), Gaps = 10/117 (8%)

Query: 110 DYRKITTKHIRSGV---ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
           D  K+    +R  +    SR   P S  + L+S R  +KW   +  + INP L ++ PK 
Sbjct: 41  DLSKLNNMDVRQAIATLHSRDFNPRSLTRILSSWRNFYKWYSLKYELDINPTLGIKAPKV 100

Query: 167 KTEGIRPWTKEDMQ-------QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216
                +  T ++ +       Q     +  ++ +  FE L  SGLR S+     +++
Sbjct: 101 ARPLPKALTADEAKLLLDVGLQTDDNSAVHARDQAMFELLYSSGLRLSELVNLDIEY 157


>gi|239993652|ref|ZP_04714176.1| tyrosine recombinase [Alteromonas macleodii ATCC 27126]
          Length = 306

 Score = 37.7 bits (86), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 51/241 (21%), Positives = 98/241 (40%), Gaps = 47/241 (19%)

Query: 87  LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK---HTPSSAIQFLTSMRVL 143
           L++++  +++    ++ +  G +++  +T   I+  +   K   H+P S    L+++R  
Sbjct: 28  LSLHTIKNYQRQLTEVAKLLGLYEWSGLTPSDIKRVMADAKMSGHSPRSIALRLSALRTF 87

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF------KSFWSEGSQPR--LA 195
            ++ +  + +  NP   ++ PK+     +  + ++MQQ        S   EG Q R    
Sbjct: 88  CQYLIDHQQLFSNPVEGIQAPKQGKPLPKQLSVDEMQQLLNASPRSSDDDEGMQLRDVAM 147

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA------MTP 249
           FE L   GLR S+                    TG  +   L DG +K++       + P
Sbjct: 148 FELLYGCGLRLSE-------------------LTGLNLADCLKDGTVKVMGKGSKQRILP 188

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMA 309
           +G+        ++ +NA     W K +   A   +SA  V K    IS    A   + MA
Sbjct: 189 LGRHA------QKALNA-----WLKVRPAYASPYESAVFVSKRKTRISNRQVANRLDKMA 237

Query: 310 T 310
           +
Sbjct: 238 S 238


>gi|264677254|ref|YP_003277160.1| tyrosine recombinase XerD [Comamonas testosteroni CNB-2]
 gi|262207766|gb|ACY31864.1| tyrosine recombinase XerD [Comamonas testosteroni CNB-2]
          Length = 318

 Score = 37.7 bits (86), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 55/221 (24%), Positives = 86/221 (38%), Gaps = 19/221 (8%)

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINP---CLSVERPKRKTEGIRPWTKEDM 179
           VE  K T S+  + LT +R  F WA+R++ +A +P    L+ ++P R  + +     E +
Sbjct: 85  VEGTKATSSN--RRLTVLRRYFHWALREKRIAADPTVRMLAAKQPPRMPKTLTQEQVEAL 142

Query: 180 QQFKSFWSE-GSQPRLAFEFLLYSGLRCSD---------SCRAGVQHLQNNIFSIKTQKT 229
                  S  G + R   E +  SGLR S+           R+GV  +       +    
Sbjct: 143 LDAPDVDSPLGLRDRAMLELMYASGLRVSELVGVCMHELDLRSGVLRVTGKGRKERLVPF 202

Query: 230 GTIITVELPDGFMKLLAMTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGVNK--S 285
           G      L     +  A+   G++T   F+      M+   F +  K  A  AGVN   S
Sbjct: 203 GQEAQHWLERYLQQARAVILGGQQTEEVFVTQRGAGMSRVMFWVIVKKCAQIAGVNSPLS 262

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            H +R   AT   + GA    +    G   +     YT  A
Sbjct: 263 PHTLRHAFATHLLNHGADLRVVQMLLGHADISTTTIYTHVA 303


>gi|22536401|ref|NP_687252.1| phage integrase family site specific recombinase [Streptococcus
           agalactiae 2603V/R]
 gi|22533228|gb|AAM99124.1|AE014201_22 site-specific recombinase, phage integrase family [Streptococcus
           agalactiae 2603V/R]
          Length = 384

 Score = 37.7 bits (86), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 28/108 (25%), Positives = 49/108 (45%), Gaps = 3/108 (2%)

Query: 101 QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
            I+   GD    KI+    ++ +  +  T  +  Q  +    +F +A++ + +  NP   
Sbjct: 100 HILPVMGDLPISKISPLDCQNFITDKAKTFKNIKQIKSYTGKVFDFAIKMKLLKHNPMAE 159

Query: 161 VERPKRKTEGIRP-WTKEDMQQFKS--FWSEGSQPRLAFEFLLYSGLR 205
           +  PKRK   I   WT +++Q+F +     E  +    F  L YSGLR
Sbjct: 160 IIMPKRKKTRIENYWTVQELQEFLAIVLQEEPYKHYALFRLLAYSGLR 207


>gi|150008883|ref|YP_001303626.1| tyrosine type site-specific recombinase [Parabacteroides distasonis
           ATCC 8503]
 gi|301311928|ref|ZP_07217850.1| integrase/recombinase XerC [Bacteroides sp. 20_3]
 gi|149937307|gb|ABR44004.1| tyrosine type site-specific recombinase [Parabacteroides distasonis
           ATCC 8503]
 gi|300830030|gb|EFK60678.1| integrase/recombinase XerC [Bacteroides sp. 20_3]
          Length = 302

 Score = 37.4 bits (85), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 59/253 (23%), Positives = 106/253 (41%), Gaps = 35/253 (13%)

Query: 99  FDQIIR--KSGDFDYRKITTKHIRSGVES---RKHTPSSAIQFLTSMRVLFKWAVRQEYV 153
           F + +R  + G F+  +I +  +RS + S    K +P S  + L+S++  FK+ +++  V
Sbjct: 31  FQRYVREHREGVFNPGEIDSDFVRSWIVSLMDEKLSPVSVNRKLSSLKSFFKFLMKRGIV 90

Query: 154 AINPCLSVERPKRKTE---GIRPWTKEDMQQFKSFWS--EGSQPRLAFEFLLYSGLRCSD 208
           + NP   V  PK K      I+    E +     F    EG + RL  E L  +G+R S+
Sbjct: 91  SANPLRLVSGPKTKKPLPYFIKDSELEALLDGDGFDEDFEGVRNRLVIEMLYDTGMRRSE 150

Query: 209 SCRAGVQHLQNNIFSIKTQKTG---TIITVELPDGFMKL-LAMTPI-------GKETFFI 257
               G++++  +  +++ + TG       +   +G   L LA T +         E FF+
Sbjct: 151 LI--GIRNVDVDYEAMQVKVTGKRNKQRLIPFAEGLKNLMLAYTEVRDREVEAAGEWFFV 208

Query: 258 NNDKQKMNATQFSIWFKAKATKAGVN-------KSAHGVRKFSATISADAGATAHELMAT 310
                + N  Q S        K  ++       +S H +R   AT   + GA  + +   
Sbjct: 209 -----RKNGNQLSTGIVYNIVKKQLSEIPMLAKRSPHVLRHSFATSMLNNGAELNAVKDL 263

Query: 311 YGWKTVDQAETYT 323
            G  ++     YT
Sbjct: 264 LGHSSLASTSVYT 276


>gi|90421232|ref|ZP_01229131.1| integrase/recombinase [Aurantimonas manganoxydans SI85-9A1]
 gi|90334507|gb|EAS48293.1| integrase/recombinase [Aurantimonas manganoxydans SI85-9A1]
          Length = 318

 Score = 37.4 bits (85), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 30/127 (23%), Positives = 60/127 (47%), Gaps = 10/127 (7%)

Query: 114 ITTKHIRSGVE--SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP-----KR 166
           + + H+ + +E  +RK +  +A Q L+++R+LF W V  + V +NP  SV  P     + 
Sbjct: 66  VRSLHVAAFIEELTRKRSAPTAKQQLSAIRMLFDWLVVGQVVPVNPAASVRGPSHSVRRG 125

Query: 167 KTEGIRPW-TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFS 223
           KT  + P   ++ +         G + R     ++YS +R   +    V+  ++QN    
Sbjct: 126 KTPVLDPTEARQLLDAIDVTTPAGLRDRALIGLMIYSFVRVGAALGMKVEDVYVQNRRLW 185

Query: 224 IKTQKTG 230
           ++  + G
Sbjct: 186 VRLNEKG 192


>gi|289191135|dbj|BAI77470.1| PsvA protein [Pseudomonas syringae pv. dendropanacis]
          Length = 731

 Score = 37.4 bits (85), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 57/240 (23%), Positives = 93/240 (38%), Gaps = 20/240 (8%)

Query: 75  ISEYRKSAHWGSLAVNSRI---SFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
           IS+Y +  H    A+N+R+   S ES   Q   ++   D   I   H+R  +ES KH  S
Sbjct: 145 ISDYLQRQHMP--AINARLFSDSLESDLKQYAFQNNRSDTLAII-GHLRR-IESNKHGVS 200

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           + + F T    L +W + Q +   N   S  R   +   +  W     +           
Sbjct: 201 AILPFKTKSSDLDEWLIDQVFSDENQTTSSYRSTLR--ALSHWLAAQEKPGLCDPDYLHS 258

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA-MTPI 250
             L  + L +S L     C A +QH++N     K +      T  +PD    L++    I
Sbjct: 259 HDLTGDVLKFSCLPGRHQCSAALQHMRNYDLGSKVRLKKQRDTRNIPDEDQTLISHYQKI 318

Query: 251 GKETFFINNDK--QKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELM 308
             +   I N K  +K N        +    +  V+K A  +R FSA +  +   +   L+
Sbjct: 319 ANDALVIKNSKAGKKTN--------RDPHGRTSVDKYASVLRSFSAWLKEEGKGSLSTLL 370


>gi|160894098|ref|ZP_02074876.1| hypothetical protein CLOL250_01652 [Clostridium sp. L2-50]
 gi|156864131|gb|EDO57562.1| hypothetical protein CLOL250_01652 [Clostridium sp. L2-50]
          Length = 405

 Score = 37.4 bits (85), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 1/74 (1%)

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVER-PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196
             M  LF  A     +A NPC  V+R  K   + ++ WT E+ +QF +    GS+  + F
Sbjct: 128 NQMTALFNHAKNIYNLADNPCDKVKRMGKTSKKKMKFWTIEEYRQFMTGIEPGSKYYVLF 187

Query: 197 EFLLYSGLRCSDSC 210
           E L ++G R  ++ 
Sbjct: 188 ELLFWTGAREGEAL 201


>gi|261207379|ref|ZP_05922066.1| predicted protein [Enterococcus faecium TC 6]
 gi|289566793|ref|ZP_06447205.1| predicted protein [Enterococcus faecium D344SRF]
 gi|260078439|gb|EEW66143.1| predicted protein [Enterococcus faecium TC 6]
 gi|289161420|gb|EFD09308.1| predicted protein [Enterococcus faecium D344SRF]
          Length = 382

 Score = 37.4 bits (85), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 65/147 (44%), Gaps = 16/147 (10%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE--SRKHTP 130
           WL S Y+K+    S +  ++I F  +   I    G+    KI T + +  V   S K T 
Sbjct: 76  WLES-YKKTVKESSYS-RTKIIFNKH---IYPNFGNIKLSKINTAYCQKVVNDWSEKGTS 130

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE---GIRPWTKEDMQQFKSFWS 187
                F+  M  +FK+A+     + NP L++  PK + E    ++ +TKE ++ F +  S
Sbjct: 131 KQYPLFINYMNKVFKYAINIGLTSDNPTLNLIIPKPQIETEKKLKLYTKEQLELFLNEVS 190

Query: 188 EGSQPRLA------FEFLLYSGLRCSD 208
           +   P         F  L +SG R  +
Sbjct: 191 QEQNPYFKNRDYTLFRLLAFSGCRIGE 217


>gi|34762220|ref|ZP_00143227.1| DNA integration/recombination/invertion protein [Fusobacterium
           nucleatum subsp. vincentii ATCC 49256]
 gi|27888181|gb|EAA25240.1| DNA integration/recombination/invertion protein [Fusobacterium
           nucleatum subsp. vincentii ATCC 49256]
          Length = 405

 Score = 37.4 bits (85), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 25/101 (24%), Positives = 50/101 (49%), Gaps = 1/101 (0%)

Query: 81  SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSM 140
            A + S   N++IS   YF +  +K  D +   I  K+    +  R  + ++ I +   +
Sbjct: 104 DATYSSYLSNTKISILPYFFKENKKLKDINTFDIQ-KYYFHELNVRGVSANTVIHYHNLL 162

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
            + FK+A +   + INP L+VE+PK+     + +  E +++
Sbjct: 163 SLTFKYAQKIGIITINPMLNVEKPKKVRYIAKVYNHEQIKE 203


>gi|310826662|ref|YP_003959019.1| integrase [Eubacterium limosum KIST612]
 gi|308738396|gb|ADO36056.1| integrase [Eubacterium limosum KIST612]
          Length = 412

 Score = 37.4 bits (85), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 35/168 (20%), Positives = 80/168 (47%), Gaps = 10/168 (5%)

Query: 50  ALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESY-FDQIIRKSGD 108
            +T    ++E INS        +WL +++ +++    +  +S   + S  ++ +I   GD
Sbjct: 77  VITEKFQEKEIINSEEYSAFLREWL-TDWLENSKKTEIKKSSYTQYSSVVYNHLIPTIGD 135

Query: 109 FDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL------FKWAVRQEYVAINPCLSVE 162
           +  +++T+  I++ V+++      A+   T  R +       K AV+   + +NPC+ V 
Sbjct: 136 YRLQEVTSDVIQNYVKAKLSHHQKALSSTTVRRHISILSSALKQAVKLGIITVNPCIDVC 195

Query: 163 RPKRKTEGIRPWTKEDMQQF-KSFWSEGSQPRLAFEFL-LYSGLRCSD 208
            P  K   +  ++KE+ Q+  K+ + +  + +     L L +G+R  +
Sbjct: 196 IPAAKKRKMDVFSKEEYQKLEKTLYCDQDKVKATAVLLALKTGVRLGE 243


>gi|332139609|ref|YP_004425347.1| tyrosine recombinase [Alteromonas macleodii str. 'Deep ecotype']
 gi|327549631|gb|AEA96349.1| tyrosine recombinase [Alteromonas macleodii str. 'Deep ecotype']
          Length = 306

 Score = 37.4 bits (85), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 48/228 (21%), Positives = 93/228 (40%), Gaps = 47/228 (20%)

Query: 87  LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK---HTPSSAIQFLTSMRVL 143
           L++++  +++    ++ +  G +++  +T   I+  +   K   H+P S    L+++R  
Sbjct: 28  LSLHTIKNYKRQLTEVAKLLGLYEWSGLTPSDIKRVMADAKMSGHSPRSIALRLSALRTF 87

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF------KSFWSEGSQPR--LA 195
            ++ +  + +  NP   ++ PK+     +  + ++MQQ        S   EG Q R    
Sbjct: 88  CQYLIEHQQLFSNPVEGIQAPKQGKPLPKQLSVDEMQQLLNASPQSSDEDEGMQLRDVAM 147

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA------MTP 249
           FE L   GLR S+                    TG  +   L DG +K++       + P
Sbjct: 148 FELLYGCGLRLSEL-------------------TGLNLADCLKDGTVKVMGKGSKQRILP 188

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATIS 297
           +G+        ++ +NA     W K +   A   +SA  V K    IS
Sbjct: 189 LGRHA------QKALNA-----WLKVRPAYASPYESAVFVSKRKTRIS 225


>gi|221065123|ref|ZP_03541228.1| integrase family protein [Comamonas testosteroni KF-1]
 gi|220710146|gb|EED65514.1| integrase family protein [Comamonas testosteroni KF-1]
          Length = 348

 Score = 37.4 bits (85), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 49/117 (41%), Gaps = 9/117 (7%)

Query: 101 QIIRKSGDFDYRKITTKHIR---SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINP 157
           Q + ++ D +   +   HIR   + + S   +       L+  R  F+WA ++E V  NP
Sbjct: 49  QSLAQAADQELLTLQPAHIRRFAAQMHSAGRSARGIALILSGWRSFFRWAAQRELVPFNP 108

Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP-----RLAFEFLLYS-GLRCSD 208
              V  PK      +    +D  Q  SF    + P      +A   LLYS GLR ++
Sbjct: 109 VEGVRGPKAAKPLPKALAVDDAVQLASFQIPDADPWIEARDVAMTELLYSCGLRVAE 165


>gi|325662745|ref|ZP_08151339.1| hypothetical protein HMPREF0490_02079 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325470982|gb|EGC74210.1| hypothetical protein HMPREF0490_02079 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 361

 Score = 37.4 bits (85), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 5/86 (5%)

Query: 143 LFKWAVRQEYVAINPCLSV-ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201
           +F +AV+   +  NPC       K   E ++ WTK + +QF +   +      AF  + Y
Sbjct: 127 MFNYAVKYYDLRENPCTKAGSMGKSNAEEMQFWTKAEFEQFITAVQDKPASYTAFMTMYY 186

Query: 202 SGLRCSDSCR---AGVQHLQNNIFSI 224
           +G+R  + C    A V  L+NN  +I
Sbjct: 187 TGMRVGELCALTPADVD-LKNNTIAI 211


>gi|255014711|ref|ZP_05286837.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_7]
          Length = 302

 Score = 37.4 bits (85), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 59/253 (23%), Positives = 106/253 (41%), Gaps = 35/253 (13%)

Query: 99  FDQIIR--KSGDFDYRKITTKHIRSGVES---RKHTPSSAIQFLTSMRVLFKWAVRQEYV 153
           F + +R  + G F+  +I +  +RS + S    K +P S  + L+S++  FK+ +++  V
Sbjct: 31  FQRYVREHREGVFNPGEIDSDFVRSWIVSLMDEKLSPVSVNRKLSSLKSFFKFLMKRGIV 90

Query: 154 AINPCLSVERPKRKTE---GIRPWTKEDMQQFKSFWS--EGSQPRLAFEFLLYSGLRCSD 208
           + NP   V  PK K      I+    E +     F    EG + RL  E L  +G+R S+
Sbjct: 91  SANPLRLVSGPKTKKPLPYFIKDSELEALLDGDGFDEDFEGVRNRLVIEMLYDTGMRRSE 150

Query: 209 SCRAGVQHLQNNIFSIKTQKTG---TIITVELPDGFMKL-LAMTPI-------GKETFFI 257
               G++++  +  +++ + TG       +   +G   L LA T +         E FF+
Sbjct: 151 LI--GIRNVDVDYEAMQVKVTGKRNKQRLIPFAEGLKNLMLAYTEVRDREVEAAGEWFFV 208

Query: 258 NNDKQKMNATQFSIWFKAKATKAGVN-------KSAHGVRKFSATISADAGATAHELMAT 310
                + N  Q S        K  ++       +S H +R   AT   + GA  + +   
Sbjct: 209 -----RKNGNQLSTGIVYNIVKKQLSEIPMLAKRSPHVLRHSFATSMLNNGAELNTVKDL 263

Query: 311 YGWKTVDQAETYT 323
            G  ++     YT
Sbjct: 264 LGHSSLASTSVYT 276


>gi|225026538|ref|ZP_03715730.1| hypothetical protein EUBHAL_00787 [Eubacterium hallii DSM 3353]
 gi|224956152|gb|EEG37361.1| hypothetical protein EUBHAL_00787 [Eubacterium hallii DSM 3353]
          Length = 354

 Score = 37.4 bits (85), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 3/90 (3%)

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVER-PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196
             +  LF  A R   +  NPC  V+R  K   + +  W KE+  +F S     S+  L F
Sbjct: 128 NQINALFNHAQRIYNLKENPCKKVKRMGKSDADKLDFWIKEEYDRFISGVDRKSEDYLMF 187

Query: 197 EFLLYSGLRCSDSCRAGVQ--HLQNNIFSI 224
           E L ++G+R  +     +    + NN+  I
Sbjct: 188 EILFWTGIREGELLSLTIADFDMTNNLLHI 217


>gi|237744359|ref|ZP_04574840.1| phage integrase [Fusobacterium sp. 7_1]
 gi|229431588|gb|EEO41800.1| phage integrase [Fusobacterium sp. 7_1]
          Length = 353

 Score = 37.4 bits (85), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 28/108 (25%), Positives = 51/108 (47%), Gaps = 4/108 (3%)

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +K+  SS       +++LF W VR + +A NP   V+R K +T+        D  +F   
Sbjct: 117 KKYKGSSIRTINAYVKMLFTWCVRYKNLASNPFDMVDRLKLETKKRMDIITVD--EFNQI 174

Query: 186 WSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
             + + P  +L F+ L ++GLR  ++    +  +  N  +I   K+ T
Sbjct: 175 IKQVNNPDMKLMFKLLFWTGLRIGEARALKIDDIDFNNKTISVTKSYT 222


>gi|147668730|ref|YP_001213548.1| phage integrase family protein [Dehalococcoides sp. BAV1]
 gi|146269678|gb|ABQ16670.1| phage integrase family protein [Dehalococcoides sp. BAV1]
          Length = 319

 Score = 37.4 bits (85), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 16/85 (18%), Positives = 47/85 (55%), Gaps = 3/85 (3%)

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
           ++ P+S + +  +++  F W + +  ++ +P  +++ P+ + + IRP+T++ ++   +  
Sbjct: 89  RNNPTSVLDYYKAVKRFFNWLIEEGVLSKSPLATIKPPRTEQKIIRPFTRQQIEDLLATC 148

Query: 187 SE---GSQPRLAFEFLLYSGLRCSD 208
            +   G + +     +L +GLR S+
Sbjct: 149 GDSPIGLRNKAMILTMLDTGLRVSE 173


>gi|89890506|ref|ZP_01202016.1| tyrosine recombinase XerD [Flavobacteria bacterium BBFL7]
 gi|89517421|gb|EAS20078.1| tyrosine recombinase XerD [Flavobacteria bacterium BBFL7]
          Length = 298

 Score = 37.4 bits (85), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 51/213 (23%), Positives = 77/213 (36%), Gaps = 19/213 (8%)

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPK--RKTEGIRPWTKED--MQQFKSFWSEGSQP 192
           L+S++V F + + ++Y   NP   +E PK  RK        + D  +         G + 
Sbjct: 76  LSSLKVFFNYLILEDYRKDNPLELIESPKIGRKLPDTLSTQEIDALINSIDRSTPHGERN 135

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-----------TIITVELPDGF 241
           R   E L   GLR S+     +  L      IK    G           TI  + L    
Sbjct: 136 RAILETLYGCGLRVSELTTLKISDLFFQEGFIKVTGKGDKQRFIPIGDFTIKVINLYINE 195

Query: 242 MK-LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISA 298
           ++  L + P   +T F+N     +         K    KAG+ K  S H  R   AT   
Sbjct: 196 IRPHLPIKPQHTDTVFLNRRGAGLTRAMIFHIIKELKVKAGITKKISPHTFRHSFATHLL 255

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           + GA    +    G +++   E Y    DR  L
Sbjct: 256 ENGADLRSIQMMLGHESITTTEIYMH-VDRAHL 287


>gi|126175915|ref|YP_001052064.1| phage integrase family protein [Shewanella baltica OS155]
 gi|125999120|gb|ABN63195.1| phage integrase family protein [Shewanella baltica OS155]
          Length = 376

 Score = 37.4 bits (85), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 76/188 (40%), Gaps = 18/188 (9%)

Query: 79  RKSAHWG-SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFL 137
           R + HW  S  +NS+  F  +   ++   GD     +T +HI    +    +   A + L
Sbjct: 104 RYARHWKPSTLLNSQRGFTRHIAPVL---GDVPLAALTRQHIEQWFDGMHASKGMANRLL 160

Query: 138 TSMRVLFKWAVRQEY--VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-----SEGS 190
             + V+ + A   EY     NPC   +R K  T   R  ++E++   K  W      E +
Sbjct: 161 PLLSVMMQQAEVYEYRPAQSNPCKGFKRYK-STHSERYLSEEEL---KRLWLALDSHEKA 216

Query: 191 QPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248
            P   +    L+ +G RC++ C       +   + +   KTG   TV L     +LL+  
Sbjct: 217 SPVAVMVLRLLILTGCRCNEVCSVKWADYRQGHWYLPDSKTGA-KTVFLSSFARELLSDW 275

Query: 249 PIGKETFF 256
           P   E  F
Sbjct: 276 PQVSEHLF 283


>gi|288926604|ref|ZP_06420520.1| integrase/recombinase XerD [Prevotella buccae D17]
 gi|288336626|gb|EFC74996.1| integrase/recombinase XerD [Prevotella buccae D17]
          Length = 304

 Score = 37.4 bits (85), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 2/82 (2%)

Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301
           L+ + P  ++  F+N     +  T   I  K +A  AG+ K  S H +R   AT     G
Sbjct: 202 LMTIKPGEEDYVFLNRRGHHLTRTMILIMIKRQAVAAGIKKTISPHTLRHSFATALLKGG 261

Query: 302 ATAHELMATYGWKTVDQAETYT 323
           A    + A  G +++   E YT
Sbjct: 262 ADLRAIQAMLGHESIGTTEVYT 283


>gi|222081454|ref|YP_002540817.1| site-specific integrase protein [Agrobacterium radiobacter K84]
 gi|221726133|gb|ACM29222.1| site-specific integrase protein [Agrobacterium radiobacter K84]
          Length = 393

 Score = 37.4 bits (85), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 8/89 (8%)

Query: 258 NNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATISADAGATAHELMATYGWK 314
           N D+Q +     +   KA+  +AG++    SAHG+R    T +A+ G    E M     +
Sbjct: 310 NIDRQALTPQSVNFILKARVKQAGLDPEAFSAHGLRSGYLTEAANRGVPLPEAMQQSLHR 369

Query: 315 TVDQAETYTKGADRIRLGIKNSRRISSVV 343
           +V QA +Y   A+R     KN R    V+
Sbjct: 370 SVTQAASYYNNAER-----KNGRAARLVI 393


>gi|307565005|ref|ZP_07627522.1| putative tyrosine recombinase XerD [Prevotella amnii CRIS 21A-A]
 gi|307346318|gb|EFN91638.1| putative tyrosine recombinase XerD [Prevotella amnii CRIS 21A-A]
          Length = 310

 Score = 37.4 bits (85), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 44/206 (21%), Positives = 83/206 (40%), Gaps = 17/206 (8%)

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGS 190
           + L+ +R  +++ +   Y+ I+P   +E PK+        +  ++    +       EG 
Sbjct: 78  RVLSGIRHFYRFLILDGYLEIDPTELLESPKQPKHLPEVLSTAEVDIILNSIDLTKWEGQ 137

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---IITV------ELPDGF 241
           + +   E L   GLR S+     + +L      ++    G+   ++ +      EL   F
Sbjct: 138 RNKAIIEVLFSCGLRVSELTSLKISNLYFQEQYVRIMGKGSKERLVPISPRAIEELNYWF 197

Query: 242 MKLLAM-TPIGKETF-FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS 297
           +    M    G++ + F+N     +  T   I  K  A  AG+ K  S H +R   AT  
Sbjct: 198 LDRSQMKIKEGEDDYVFLNRRGSHLTRTMILIMLKRYAYAAGIKKTISPHTLRHSFATAL 257

Query: 298 ADAGATAHELMATYGWKTVDQAETYT 323
            + GA    + A  G +++   E YT
Sbjct: 258 LEGGADLRSIQAMLGHESIVTTELYT 283


>gi|307320026|ref|ZP_07599448.1| integrase family protein [Sinorhizobium meliloti AK83]
 gi|306894403|gb|EFN25167.1| integrase family protein [Sinorhizobium meliloti AK83]
          Length = 391

 Score = 37.4 bits (85), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 8/89 (8%)

Query: 258 NNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATISADAGATAHELMATYGWK 314
           N D++ +     ++  KA+  +AG++    SAHG+R    T +A+ G    E M     K
Sbjct: 308 NVDRRALTPQSINLILKARCEQAGLDPALFSAHGLRSGYLTEAANRGIPLPEAMQQSLHK 367

Query: 315 TVDQAETYTKGADRIRLGIKNSRRISSVV 343
           +V QA +Y   A+R     KN R    +V
Sbjct: 368 SVTQAASYYNNAER-----KNGRAARLIV 391


>gi|257883925|ref|ZP_05663578.1| phage integrase [Enterococcus faecium 1,231,501]
 gi|257819763|gb|EEV46911.1| phage integrase [Enterococcus faecium 1,231,501]
          Length = 381

 Score = 37.4 bits (85), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 14/121 (11%)

Query: 102 IIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV 161
           I+ K G+    ++T K  +  V S   T        ++ + +F +A+    +  NP  +V
Sbjct: 99  ILPKYGNLRMNEVTVKKAQQIVNSWAETTDQYKVLHSTSKRIFSYAINLGIIETNPLENV 158

Query: 162 ERPKRKT----EGIRPWTKEDMQQFKSFWSEGSQP--------RLAFEFLLYSGLRCSDS 209
             PKR T    E ++ ++KE  Q    F    S+P        +    FL YSG+R S++
Sbjct: 159 LMPKRTTTKHKEKVKVYSKE--QLITLFDYLNSKPETYRNDFDKTLLRFLFYSGVRISEA 216

Query: 210 C 210
            
Sbjct: 217 L 217


>gi|229015245|ref|ZP_04172280.1| hypothetical protein bmyco0001_55910 [Bacillus mycoides DSM 2048]
 gi|228746047|gb|EEL96015.1| hypothetical protein bmyco0001_55910 [Bacillus mycoides DSM 2048]
          Length = 280

 Score = 37.4 bits (85), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 44/243 (18%), Positives = 97/243 (39%), Gaps = 12/243 (4%)

Query: 99  FDQIIRKSGDFDYRKITTKHIRSG-VESRKHT-PSSAIQFLTSMRVLFKWAVRQEYVAIN 156
           ++ ++R  GD +  + TT+ ++   +E+ +H  PSS    +  ++ LF+W   + ++  N
Sbjct: 31  YNLLLRYFGDINMSEFTTEKLKGYLIEAGEHLKPSSLGHRVRCIKSLFRWTHDEGFILKN 90

Query: 157 PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216
           P   ++ PK   +  +  ++ +++  +      S     FEFL  +G R  +  +     
Sbjct: 91  PAAKLKEPKLGKKIPKFLSELEIEHLRE-ACHNSMENALFEFLYSTGCRIGEVVKLNRVD 149

Query: 217 LQNNIFSIKTQKTG-----TIITVELPDGFMKLLAMTPIGKETFFINND--KQKMNATQF 269
           +  +  S+     G                 + L      +   FI     K++M+    
Sbjct: 150 INFSTNSVIVHGKGDKEREVYFNTRCTIWLKRYLDERDDEEPCLFITERRPKRRMSIDNL 209

Query: 270 SIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
               K  + +A + KS   H +R   AT   + GA    + +  G +  +    Y + + 
Sbjct: 210 RFIIKRISNRARIKKSIHPHQLRHSYATHMINNGAPLEVIQSLLGHEKSETTRIYAQLSG 269

Query: 328 RIR 330
           ++R
Sbjct: 270 KLR 272


>gi|217975611|ref|YP_002360281.1| integrase family protein [Shewanella baltica OS223]
 gi|217500806|gb|ACK48858.1| integrase family protein [Shewanella baltica OS223]
          Length = 376

 Score = 37.4 bits (85), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 76/188 (40%), Gaps = 18/188 (9%)

Query: 79  RKSAHWG-SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFL 137
           R + HW  S  +NS+  F  +   ++   GD     +T +HI    +    +   A + L
Sbjct: 104 RYARHWKPSTLLNSQRGFTRHIAPVL---GDVPLAALTRQHIEQWFDGMHASKGMANRLL 160

Query: 138 TSMRVLFKWAVRQEY--VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-----SEGS 190
             + V+ + A   EY     NPC   +R K  T   R  ++E++   K  W      E +
Sbjct: 161 PLLSVMMQQAEVYEYRPAQSNPCKGFKRYK-STHSERYLSEEEL---KRLWLALDSHEKA 216

Query: 191 QPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248
            P   +    L+ +G RC++ C       +   + +   KTG   TV L     +LL+  
Sbjct: 217 SPVAVMVLRLLILTGCRCNEVCSVKWADYRQGHWYLPDSKTGA-KTVFLSSFARELLSDW 275

Query: 249 PIGKETFF 256
           P   E  F
Sbjct: 276 PQVSEHLF 283


>gi|239905355|ref|YP_002952094.1| site-specific recombinase [Desulfovibrio magneticus RS-1]
 gi|239795219|dbj|BAH74208.1| site-specific recombinase [Desulfovibrio magneticus RS-1]
          Length = 411

 Score = 37.4 bits (85), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 53/243 (21%), Positives = 99/243 (40%), Gaps = 23/243 (9%)

Query: 103 IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAIN-PCLSV 161
           +R+  + D  ++  K   +G+  R H        + + R ++K A +++ VA+  P   +
Sbjct: 147 LREITEADLERVQDKIRAAGLSDRSHE-----YIMGTFRRVWKHAFKRKIVAVECPVGKL 201

Query: 162 ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE-FLLYSGLRCSDSCR---AGVQHL 217
           + PK     +R  T E++Q   +  +   Q       F L +G R S++ +     V  +
Sbjct: 202 DIPKPVNTRLRVLTPEEIQALLAELATVDQTAHDLTVFALLTGCRASEAFKLRWENVDFV 261

Query: 218 QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK--ETFFINNDKQKMNATQFSIWFKA 275
           +      +T K      V L    + +L     G+  E  F   D    +A   S  FK 
Sbjct: 262 REAALFPET-KNREPREVFLAADVLDMLKRRGPGRPGEYVFTKRDGTPYDAAPSS--FKT 318

Query: 276 KATKAGVNK--------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
              + G N+        + H +R  +AT +A  G    ++   +GWKT      Y KG++
Sbjct: 319 ALERLGFNEGRALRDRATFHNLRHSAATYAARRGVPVKDMQTIFGWKTPSMVFRYAKGSE 378

Query: 328 RIR 330
            ++
Sbjct: 379 DVQ 381


>gi|260062724|ref|YP_003195804.1| hypothetical protein RB2501_14074 [Robiginitalea biformata
           HTCC2501]
 gi|88784291|gb|EAR15461.1| hypothetical protein RB2501_14074 [Robiginitalea biformata
           HTCC2501]
          Length = 407

 Score = 37.4 bits (85), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 37/169 (21%), Positives = 72/169 (42%), Gaps = 17/169 (10%)

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
           P+S      ++  +F   V+  +   N  + ++  K K    +P+TKE+M+  +++  E 
Sbjct: 172 PNSVSNHKGNLSAIFSKVVQDRWADRNFFVDIQTKKVKPRKNQPFTKEEMEAIQAYTKEF 231

Query: 190 SQPRLAF-EFLLYSGLRCSDSCRAGVQHLQNNIFSI----KTQKTGTIITVELPDGFMKL 244
                 F  F+ YS +R  +     V+H+     ++    K  K   I+ +E    F++ 
Sbjct: 232 DPLLYNFLRFIFYSFMRNREILSVQVKHIDMKKRTVAIETKADKISHILMIEPMYQFLED 291

Query: 245 LAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
           L +          TP GK   +  N + K+N   F+  F+A     G++
Sbjct: 292 LGVGDLPDHYHIFTPSGKPGHWPTNPRDKVNF--FAKRFRAVRDHLGID 338


>gi|307307477|ref|ZP_07587211.1| integrase family protein [Shewanella baltica BA175]
 gi|306910152|gb|EFN40586.1| integrase family protein [Shewanella baltica BA175]
          Length = 376

 Score = 37.4 bits (85), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 76/188 (40%), Gaps = 18/188 (9%)

Query: 79  RKSAHWG-SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFL 137
           R + HW  S  +NS+  F  +   ++   GD     +T +HI    +    +   A + L
Sbjct: 104 RYARHWKPSTLLNSQRGFTRHIAPVL---GDVPLAALTRQHIEQWFDGMHASKGMANRLL 160

Query: 138 TSMRVLFKWAVRQEY--VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-----SEGS 190
             + V+ + A   EY     NPC   +R K  T   R  ++E++   K  W      E +
Sbjct: 161 PLLSVMMQQAEVYEYRPAQSNPCKGFKRYK-STHSERYLSEEEL---KRLWLALDSHEKA 216

Query: 191 QPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248
            P   +    L+ +G RC++ C       +   + +   KTG   TV L     +LL+  
Sbjct: 217 SPVAVMVLRLLILTGCRCNEVCSVKWADYRQGHWYLPDSKTGA-KTVFLSSFARELLSDW 275

Query: 249 PIGKETFF 256
           P   E  F
Sbjct: 276 PQVSEHLF 283


>gi|229190701|ref|ZP_04317697.1| DNA integration/recombination/invertion protein [Bacillus cereus
           ATCC 10876]
 gi|228592834|gb|EEK50657.1| DNA integration/recombination/invertion protein [Bacillus cereus
           ATCC 10876]
          Length = 369

 Score = 37.4 bits (85), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 26/118 (22%), Positives = 57/118 (48%), Gaps = 5/118 (4%)

Query: 95  FESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL---FKWAVRQ 150
           + ++ +Q +I   G     K+   HI+   ++      +    L   R+L      AV+Q
Sbjct: 88  YRAFINQHVIPSIGMVALHKLNVIHIQKCYKTAIDKGIANNSILLMHRILKSALNLAVKQ 147

Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD 208
             ++ NP    E PK++   I+ WT+E++++F +  S+ S+  + +   + +G+R  +
Sbjct: 148 NIISRNPADFAEIPKKEKPPIQTWTEEEVKKFLAH-SQESRYHIGYLLAITTGMRLGE 204


>gi|24376272|ref|NP_720380.1| phage integrase family site specific recombinase [Shewanella
           oneidensis MR-1]
 gi|24344844|gb|AAN52980.1|AE015912_5 site-specific recombinase, phage integrase family [Shewanella
           oneidensis MR-1]
          Length = 376

 Score = 37.4 bits (85), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 76/188 (40%), Gaps = 18/188 (9%)

Query: 79  RKSAHWG-SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFL 137
           R + HW  S  +NS+  F  +   ++   GD     +T +HI    +    +   A + L
Sbjct: 104 RYARHWKPSTLLNSQRGFTRHIAPVL---GDVPLAALTRQHIEQWFDGMHASKGMANRLL 160

Query: 138 TSMRVLFKWAVRQEY--VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-----SEGS 190
             + V+ + A   EY     NPC   +R K  T   R  ++E++   K  W      E +
Sbjct: 161 PLLSVMMQQAEVYEYRPAQSNPCKGFKRYK-STHSERYLSEEEL---KRLWLALDSHEKA 216

Query: 191 QPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248
            P   +    L+ +G RC++ C       +   + +   KTG   TV L     +LL+  
Sbjct: 217 SPVAVMVLRLLILTGCRCNEVCSVKWADYRQGHWYLPDSKTGA-KTVFLSSFARELLSDW 275

Query: 249 PIGKETFF 256
           P   E  F
Sbjct: 276 PQVSEHLF 283


>gi|16263669|ref|NP_436462.1| integrase-like protein [Sinorhizobium meliloti 1021]
 gi|14524383|gb|AAK65874.1| Integrase/recombinase [Sinorhizobium meliloti 1021]
          Length = 385

 Score = 37.4 bits (85), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 8/89 (8%)

Query: 258 NNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATISADAGATAHELMATYGWK 314
           N D++ +     ++  KA+  +AG++    SAHG+R    T +A+ G    E M     K
Sbjct: 302 NIDRRALTPQSVNLVLKARCEQAGLDPALFSAHGLRSGYLTEAANRGIPLPEAMQQSLHK 361

Query: 315 TVDQAETYTKGADRIRLGIKNSRRISSVV 343
           +V QA +Y   A+R     KN R    +V
Sbjct: 362 SVTQAASYYNNAER-----KNGRAARLIV 385


>gi|315607090|ref|ZP_07882094.1| integrase/recombinase XerD [Prevotella buccae ATCC 33574]
 gi|315251144|gb|EFU31129.1| integrase/recombinase XerD [Prevotella buccae ATCC 33574]
          Length = 313

 Score = 37.4 bits (85), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 2/82 (2%)

Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301
           L+ + P  ++  F+N     +  T   I  K +A  AG+ K  S H +R   AT     G
Sbjct: 211 LMTIKPGEEDYVFLNRRGHHLTRTMILIMIKRQAVAAGIKKTISPHTLRHSFATALLKGG 270

Query: 302 ATAHELMATYGWKTVDQAETYT 323
           A    + A  G +++   E YT
Sbjct: 271 ADLRAIQAMLGHESIGTTEVYT 292


>gi|307313453|ref|ZP_07593075.1| integrase family protein [Sinorhizobium meliloti BL225C]
 gi|306899279|gb|EFN29915.1| integrase family protein [Sinorhizobium meliloti BL225C]
          Length = 385

 Score = 37.4 bits (85), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 8/89 (8%)

Query: 258 NNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATISADAGATAHELMATYGWK 314
           N D++ +     ++  KA+  +AG++    SAHG+R    T +A+ G    E M     K
Sbjct: 302 NIDRRALTPQSVNLVLKARCEQAGLDPALFSAHGLRSGYLTEAANRGIPLPEAMQQSLHK 361

Query: 315 TVDQAETYTKGADRIRLGIKNSRRISSVV 343
           +V QA +Y   A+R     KN R    +V
Sbjct: 362 SVTQAASYYNNAER-----KNGRAARLIV 385


>gi|323161906|gb|EFZ47780.1| phage integrase family protein [Escherichia coli E128010]
          Length = 281

 Score = 37.4 bits (85), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 36/159 (22%), Positives = 67/159 (42%), Gaps = 6/159 (3%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-KHTPSS 132
           L  ++  SA++  L+  ++  +  +  +++   G      I  +HIR  ++ R + + + 
Sbjct: 6   LWEKFLASAYYSDLSPRTQKDYLQHQKKLLAVFGKVPADSIKPEHIRRYMDKRGEQSKTQ 65

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
           A    +SM  ++ W   + YV  NPC  V + K K        KE    +++  S    P
Sbjct: 66  ANHEKSSMSRVYSWGYERGYVKGNPCAGVSKFKAKNRERYVTDKE----YQAVLSVAPLP 121

Query: 193 R-LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
             +A E       R SD      + + N+   I+  KTG
Sbjct: 122 VFIAMEIAYLCAARVSDVLSLKWEQIGNDGIFIQQGKTG 160


>gi|294790009|ref|ZP_06755213.1| putative phage integrase [Simonsiella muelleri ATCC 29453]
 gi|294482052|gb|EFG29775.1| putative phage integrase [Simonsiella muelleri ATCC 29453]
          Length = 347

 Score = 37.4 bits (85), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 37/170 (21%), Positives = 65/170 (38%), Gaps = 8/170 (4%)

Query: 108 DFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI---NPCLSVERP 164
           D    +IT +H+   +  R   PSSA   +     +F+ A +  Y+     NP   V+  
Sbjct: 109 DAPLHEITPQHLNRFLAWRSSAPSSANVEIAFFSAIFEHAQKSGYIDFEKKNPVKGVK-- 166

Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223
           K K E    +  + +  F   +    Q  R   +  L +G R  D C      + + I +
Sbjct: 167 KNKIEKRDNYINDKL--FDVVYEHADQQMRDLMDIALLTGQRPIDICSLHTSQISDGILN 224

Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF 273
           IK  KT   +  E+     +++          F+N   + +N    + WF
Sbjct: 225 IKQVKTSARLRFEISGSLKEIIDRIAPENGFLFLNKHGKPLNRQLITNWF 274


>gi|297172260|gb|ADI23238.1| integrase [uncultured nuHF2 cluster bacterium HF0770_13K08]
          Length = 342

 Score = 37.4 bits (85), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 83/204 (40%), Gaps = 12/204 (5%)

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK-TEGIRPWTKEDMQQFKSFWSEG 189
           ++A+ +    +     AVR   +  NPC  V+  KR+ TE I     E  Q  ++   + 
Sbjct: 129 NTAVGYYALTKAALNQAVRDRIIQDNPCKHVQNIKRQDTERIFLTFAEIKQLSETLPKDE 188

Query: 190 SQPRLA--FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
           +   +A  F F  ++GL   +      + ++++       KT T   V L +  + L+  
Sbjct: 189 NSQEVARMFLFGCFTGLSLGNLETLTYKQIESDTVKFFRSKTKTWHHVPLNETALSLIGD 248

Query: 248 T----PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGAT 303
           T    P G+     N   ++ + T    W K    K  V+   H  R   AT++  +GA 
Sbjct: 249 TFDCDPNGR---IFNTPSRRYSQTLVGKWGKQAGIKKHVH--MHVSRHTFATLNLSSGAD 303

Query: 304 AHELMATYGWKTVDQAETYTKGAD 327
            + +    G K +D  + Y K  D
Sbjct: 304 IYTVSKLIGHKKLDTTQIYAKVID 327


>gi|29348151|ref|NP_811654.1| integrase, site-specific recombinase [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|253569574|ref|ZP_04846984.1| integrase [Bacteroides sp. 1_1_6]
 gi|29340054|gb|AAO77848.1| integrase, site-specific recombinase [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|251841593|gb|EES69674.1| integrase [Bacteroides sp. 1_1_6]
          Length = 293

 Score = 37.4 bits (85), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 54/238 (22%), Positives = 95/238 (39%), Gaps = 23/238 (9%)

Query: 107 GDFDYRKITTKHIRSGVES---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163
           G FD  ++  + IR  + S   R +T +S  + L+S+R  +K+ +RQ  V ++P   +  
Sbjct: 40  GKFDPLEVEGELIREWIVSLMDRGYTSTSVNRKLSSLRSFYKYLLRQGEVTVDPLRKITG 99

Query: 164 PKRKTEGIRPWTKE-------DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216
           PK K + +  + KE       D   F   + +G + RL       +G+R S+      + 
Sbjct: 100 PKNK-KPLPAFLKESEMDKLLDDTDFGEGF-KGCRDRLIIGVFYATGIRLSELIGLDDKD 157

Query: 217 LQNNIFSIK-TQKTGTIITVELPDGFMKLL--------AMTPIGKETFFINNDKQKMNAT 267
           +  +   +K T K      +   D   +L+           P   E FF+  D +++   
Sbjct: 158 VDFSASLLKVTGKRNKQRLIPFGDELKELMLEYINVRNETIPERSEAFFVKEDGERLYKN 217

Query: 268 QFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
                 K   +K    K  S H +R   AT   +  A    +    G ++V   E YT
Sbjct: 218 LVYNLVKRNLSKVATLKKRSPHVLRHTFATTMLNNDAELGAVKELLGHESVATTEIYT 275


>gi|295699756|ref|YP_003607649.1| integrase family protein [Burkholderia sp. CCGE1002]
 gi|295438969|gb|ADG18138.1| integrase family protein [Burkholderia sp. CCGE1002]
          Length = 584

 Score = 37.4 bits (85), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 48/109 (44%), Gaps = 15/109 (13%)

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINP--CLSVERPKRKT--EGIRPWTKEDMQ 180
           +R  +P SA   L  +  LF+W V Q YV  NP   L+V   +R T  +  R  T  + Q
Sbjct: 314 ARSLSPRSAGYALAVLNALFRWLVEQRYVLGNPFTGLTVRGGQRTTPFDTARALTSSEWQ 373

Query: 181 QFKSF---------WSEGSQPRLAF--EFLLYSGLRCSDSCRAGVQHLQ 218
             +           W   +  RL F  +FL  +GLR  +   A ++ +Q
Sbjct: 374 AVRGLADRLEGSYGWQAPAAQRLRFLLDFLYATGLRAQELVGATLRDIQ 422


>gi|93004888|ref|YP_579325.1| tyrosine recombinase XerD [Psychrobacter cryohalolentis K5]
 gi|92392566|gb|ABE73841.1| Tyrosine recombinase XerD [Psychrobacter cryohalolentis K5]
          Length = 312

 Score = 37.4 bits (85), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 50/229 (21%), Positives = 81/229 (35%), Gaps = 20/229 (8%)

Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
           H  S +     TP +  + L+S+R  + W +       NPC  ++ PK      +   + 
Sbjct: 69  HCLSILTQDGKTPRTQARMLSSLRQFYLWMIASNLREDNPCERIKSPKLGRPLPKDLAEA 128

Query: 178 DMQQF----KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI----FSIKTQKT 229
           D+        S  + G + +   E L   GLR S+     ++ +  N      + K  KT
Sbjct: 129 DVDNLLAAPDSSTALGLRDKAMLEVLYACGLRVSELVNLSLEQVNLNSGWLQITGKGNKT 188

Query: 230 GTIITVE---------LPDGFMKLLAMTPIGK-ETFFINNDKQKMNATQFSIWFKAKATK 279
             +   E         L  G   L+A    G  +  F+      M    F    K  A  
Sbjct: 189 RLVPLGEYAADALEDYLTHGRGDLIAHLKAGNCQAVFLTAQGGYMTRQNFWYLLKKYAKV 248

Query: 280 AGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           A ++K  S H +R   AT   + GA    +    G   +   + YT  A
Sbjct: 249 ASIDKDLSPHTLRHAFATHLLNHGADLRSVQLLLGHSDLSTTQIYTHVA 297


>gi|326390625|ref|ZP_08212180.1| integrase family protein [Thermoanaerobacter ethanolicus JW 200]
 gi|325993303|gb|EGD51740.1| integrase family protein [Thermoanaerobacter ethanolicus JW 200]
          Length = 399

 Score = 37.4 bits (85), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 70/147 (47%), Gaps = 9/147 (6%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHIRSGVES--R 126
           TLK  + E+ K++  G +   +  S+    +  I+   GD+   K+    I+  + +   
Sbjct: 67  TLKEYLDEWIKTSLKGRVKATTYQSYVKIIELYIKPVLGDYKISKLNPLLIQDMLTNMMN 126

Query: 127 KHTPSSAIQFL-TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           K+  +  I++  T ++     AV+ + ++ NPC +V+ PK+  + ++  T E   Q K F
Sbjct: 127 KNLSARTIRYTHTILKNALNQAVKWQIISNNPCNNVDLPKQTKQEMKVLTPE---QAKKF 183

Query: 186 WSEGSQPR--LAFEFLLYSGLRCSDSC 210
                  R  + FE LL SG+R  ++ 
Sbjct: 184 LEACVYNRWGILFEVLLTSGMRPGEAL 210


>gi|229824242|ref|ZP_04450311.1| hypothetical protein GCWU000282_01546 [Catonella morbi ATCC 51271]
 gi|229786596|gb|EEP22710.1| hypothetical protein GCWU000282_01546 [Catonella morbi ATCC 51271]
          Length = 331

 Score = 37.4 bits (85), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 32/141 (22%), Positives = 63/141 (44%), Gaps = 8/141 (5%)

Query: 99  FDQIIRKSGDFDYRKITTKHIR---SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI 155
           F   I  SG  D ++I  + +R   + +  + +  +S  + L+S+R  F + + Q ++  
Sbjct: 62  FQSFIETSGGGDLKQIAYQDVRLYLAYLNEQAYAKTSIRRKLSSLRSFFTYCLSQGWIET 121

Query: 156 NPCLSVE-RPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSC 210
           NP   V+ + K+KT     + +E  Q F S +        + R+  E L  +G+R S+  
Sbjct: 122 NPMELVQYQVKKKTLPQFFYEQELTQLFDSLYKREDDAAWRDRMLLEVLYATGMRVSELS 181

Query: 211 RAGVQHLQNNIFSIKTQKTGT 231
              ++ L   +  I+    G 
Sbjct: 182 ELSLERLNLEVQLIRVLGKGN 202


>gi|260425160|ref|ZP_05779169.1| site-specific recombinase, phage integrase family [Dialister
           invisus DSM 15470]
 gi|260404344|gb|EEW97891.1| site-specific recombinase, phage integrase family [Dialister
           invisus DSM 15470]
          Length = 274

 Score = 37.4 bits (85), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 28/113 (24%), Positives = 49/113 (43%), Gaps = 2/113 (1%)

Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC-LSVERPKRKTEGIRPWTK 176
           +I  G++ RK++P+        +  +F +AV    +  NP  L+    K +   ++ WT 
Sbjct: 23  YITKGLQ-RKYSPTYVKVLHVQLSAIFNYAVTYYRLPSNPAKLAGSIGKTRAHTMKFWTI 81

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229
           E   +F S +   S   L F  L Y+G+R  +     +        SI+  KT
Sbjct: 82  EQFTRFISSFPADSTEYLIFNLLFYTGMRSGELLALTLADFYEREKSIRINKT 134


>gi|313903971|ref|ZP_07837351.1| integrase family protein [Eubacterium cellulosolvens 6]
 gi|313471120|gb|EFR66442.1| integrase family protein [Eubacterium cellulosolvens 6]
          Length = 361

 Score = 37.0 bits (84), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 51/242 (21%), Positives = 97/242 (40%), Gaps = 44/242 (18%)

Query: 93  ISFESYFDQI--IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQ 150
           +  E Y D +   + S D DY     K I+              Q ++++RV + +  + 
Sbjct: 92  LDLEEYMDYLKAYKNSEDSDYVTNGEKGIK--------------QKMSALRVFYAYYYKH 137

Query: 151 EYVAINPCLSVERPK-RKTEGIRPWTKE--DMQQF------------KSFWSEGSQPRLA 195
           E +  NP + V+ PK  + E IR    E  D+  F            +S+W +      A
Sbjct: 138 EMIRTNPTVLVDMPKLHEKEIIRLDADEVADLLDFVESCGEELSPHQRSYWEKSKLRDTA 197

Query: 196 F-EFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKE 253
               LL +G+R S+     ++ +      IK  +K G  + V         L        
Sbjct: 198 IITLLLGTGIRVSECVGLDLEDVDFRNNGIKVFRKGGNEMMVYFGGEVESALKA------ 251

Query: 254 TFFINNDKQKMNATQ---FSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMAT 310
             +I  ++  +   Q    ++++ A+  +  V    + V+K+++ I++    T H+L +T
Sbjct: 252 --YIETERAAITPQQGHEHALFYSAQRRRINVKSVENLVKKYTSRITSTKKITPHKLRST 309

Query: 311 YG 312
           YG
Sbjct: 310 YG 311


>gi|225156559|ref|ZP_03724893.1| Site-specific recombinase XerD-like protein [Opitutaceae bacterium
           TAV2]
 gi|224802887|gb|EEG21135.1| Site-specific recombinase XerD-like protein [Opitutaceae bacterium
           TAV2]
          Length = 448

 Score = 37.0 bits (84), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 17/76 (22%), Positives = 36/76 (47%), Gaps = 2/76 (2%)

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW--SEGSQP 192
           ++  ++     W VR + +  NP   V RP  + + +RP     + +  + +  ++ +  
Sbjct: 139 EYQAAVNAFLNWLVRSDRIERNPLAKVRRPDTRGKAVRPSRSFTLDELAALFAAAKSTSH 198

Query: 193 RLAFEFLLYSGLRCSD 208
           R+AF  L Y+G R  +
Sbjct: 199 RIAFMLLAYTGQRVKE 214


>gi|41179218|ref|NP_958556.1| putative integrase [Lactobacillus prophage Lj965]
 gi|42518375|ref|NP_964305.1| Lj965 prophage integrase [Lactobacillus johnsonii NCC 533]
 gi|38731488|gb|AAR27434.1| putative integrase [Lactobacillus prophage Lj965]
 gi|41582660|gb|AAS08271.1| Lj965 prophage integrase [Lactobacillus johnsonii NCC 533]
          Length = 391

 Score = 37.0 bits (84), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 8/81 (9%)

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSV------ERPKRKTEGIRPWTKEDMQQFKSFWSE-G 189
           +     LF++ +R  YV+ NP   +       RP+R TE    +T+E++ QF     E G
Sbjct: 138 INEFNALFEYGIRLNYVSENPLKRIIIPKKTSRPRRDTEH-NVYTREELNQFLEVAKEYG 196

Query: 190 SQPRLAFEFLLYSGLRCSDSC 210
                 F+ L  +GLR S++ 
Sbjct: 197 LVQYTYFKLLSATGLRKSEAL 217


>gi|71042126|pdb|1Z1B|A Chain A, Crystal Structure Of A Lambda Integrase Dimer Bound To A
           Coc' Core Site
 gi|71042127|pdb|1Z1B|B Chain B, Crystal Structure Of A Lambda Integrase Dimer Bound To A
           Coc' Core Site
          Length = 356

 Score = 37.0 bits (84), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 48/215 (22%), Positives = 82/215 (38%), Gaps = 11/215 (5%)

Query: 25  FRKGHGRRIRLPYPHESTFIPAYMSALTGST--PKREYINSPRKKPTTLKWLISEYRKSA 82
           F  G  RRI +     +  I A +   +G    P    INS      TL   +  Y K  
Sbjct: 35  FGLGRDRRIAI-----TEAIQANIELFSGHKHKPLTARINS--DNSVTLHSWLDRYEKIL 87

Query: 83  HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSM 140
               +   + I++ S    I R   D     ITTK I + +     +   +SA    +++
Sbjct: 88  ASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAMLNGYIDEGKAASAKLIRSTL 147

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200
              F+ A+ + ++  N   +    K K    R    E ++ +++  S     RLA E  +
Sbjct: 148 SDAFREAIAEGHITTNHVAATRAAKSKVRRSRLTADEYLKIYQAAESSPCWLRLAMELAV 207

Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
            +G R  D C      + +    ++  KTG  I +
Sbjct: 208 VTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAI 242


>gi|254303771|ref|ZP_04971129.1| possible integrase [Fusobacterium nucleatum subsp. polymorphum ATCC
           10953]
 gi|148323963|gb|EDK89213.1| possible integrase [Fusobacterium nucleatum subsp. polymorphum ATCC
           10953]
          Length = 353

 Score = 37.0 bits (84), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 28/108 (25%), Positives = 50/108 (46%), Gaps = 4/108 (3%)

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           RK+  SS       +++LF W VR + +  NP   V+R K +T+        D  +F   
Sbjct: 117 RKYKGSSIRTINAYVKMLFTWCVRYKNLTSNPFDMVDRLKLETKKRMDIITVD--EFNQI 174

Query: 186 WSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
             + + P  +L F+ L ++GLR  ++    +  +  N  +I   K+ T
Sbjct: 175 VEQVNNPDMKLMFKLLFWTGLRIGEARALKIDDIDFNNKTISVTKSYT 222


>gi|262369523|ref|ZP_06062851.1| site-specific tyrosine recombinase [Acinetobacter johnsonii SH046]
 gi|262315591|gb|EEY96630.1| site-specific tyrosine recombinase [Acinetobacter johnsonii SH046]
          Length = 308

 Score = 37.0 bits (84), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 44/193 (22%), Positives = 78/193 (40%), Gaps = 29/193 (15%)

Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC--LSVERPKRKTEGI----- 171
           I   VE ++ + SS  + L+S+R   KWA + +++A NP     ++R  R   G+     
Sbjct: 59  IAQKVEYQQLSSSSLQRMLSSIRQFMKWAEQGQHLAFNPADDFQLKRKPRPLPGLVDIET 118

Query: 172 ------RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225
                 +   +++++Q    W      +   E L  SGLR ++     ++ +  N   ++
Sbjct: 119 INQILDQALPEKEVEQ--QMWYRD---KALLELLYSSGLRLAEVQGLRIKDIDFNRQLLR 173

Query: 226 TQKTGTIITV-----ELPDGFMKLLAMTPIGKETF------FINNDKQKMNATQFSIWFK 274
               G    V     +  D  MK L++ P+    F      FI      +   Q     K
Sbjct: 174 ITGKGNKTRVVPFGSKAKDAVMKWLSIYPLWNGDFVPDAQVFITQKGNPLGMRQIENRVK 233

Query: 275 AKATKAGVNKSAH 287
            +A +AGVN   H
Sbjct: 234 FQAQRAGVNIDLH 246


>gi|303248297|ref|ZP_07334559.1| integrase family protein [Desulfovibrio fructosovorans JJ]
 gi|302490322|gb|EFL50234.1| integrase family protein [Desulfovibrio fructosovorans JJ]
          Length = 331

 Score = 37.0 bits (84), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 52/235 (22%), Positives = 96/235 (40%), Gaps = 24/235 (10%)

Query: 113 KITTKHIR---SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
           K+  +H R   + +  R+   +S  + L+++R  F++ +R++ VA +P   ++ PK    
Sbjct: 66  KVAREHGRGFLAELHRRREAKTSMGRKLSALRGFFRYMLRKKLVAADPLAGLKNPKTDKR 125

Query: 170 GIRPWTKEDMQQFKSFW-----SEGSQP---RLAFEFLLY-SGLRCSD---------SCR 211
             +    ++     S       ++GS+     LA   LLY SGLR ++         S  
Sbjct: 126 QPKALNVDEAVALVSPAPGAPAADGSREACRDLALAELLYGSGLRVAEAVGLDLDDVSIA 185

Query: 212 AGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE-TFFINNDKQKMNATQFS 270
            GV  +       +           L +  M+    TP  +E  FF+ +   ++N  Q +
Sbjct: 186 QGVARVYGKGGKERLAPLSDASRERLREYAMRRAEFTPDPREQAFFLGSRGGRLNRRQAA 245

Query: 271 IWFKAKATKAGVNKSAHG--VRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
               A A +AG+ K  H   +R   AT   ++GA    +    G   +   + YT
Sbjct: 246 RIVDALAREAGIAKHTHPHMLRHSFATHLLESGADMRSVQELLGHARLSTTQRYT 300


>gi|194017070|ref|ZP_03055682.1| DNA integration/recombination [Bacillus pumilus ATCC 7061]
 gi|194010938|gb|EDW20508.1| DNA integration/recombination [Bacillus pumilus ATCC 7061]
          Length = 363

 Score = 37.0 bits (84), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 60/137 (43%), Gaps = 22/137 (16%)

Query: 94  SFESYFDQII---RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLF----KW 146
           S++S +D II   +  G    + +T K     +   K  P  A   LT++  +F    + 
Sbjct: 82  SWDSRYDSIIVIKKNLGSCRVKDVTEKTYEGFLN--KIAPEYAKNTLTNIHQVFNMMIRE 139

Query: 147 AVRQEYVAINPCLSVERP-----------KRKTEGIRPWTKEDMQQFKSFWSEGSQPR-L 194
           AVR  Y   NP  +V  P               + ++ W KE+++ F    S   +PR L
Sbjct: 140 AVRDSYFKDNPIHAVNLPKKAKEKKVEELDEDLKDMKFWEKEEIKLFLQVVSRKGRPRDL 199

Query: 195 A-FEFLLYSGLRCSDSC 210
           A F  L+YSGLR  ++ 
Sbjct: 200 AMFLLLIYSGLRIGEAV 216


>gi|330432804|gb|AEC17863.1| site-specific tyrosine recombinase XerC [Gallibacterium anatis
           UMN179]
          Length = 296

 Score = 37.0 bits (84), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 35/142 (24%), Positives = 63/142 (44%), Gaps = 17/142 (11%)

Query: 83  HWGSLAVNSRIS---FESYFDQIIR------KSGDFDYRKITTKHIR----SGVESRKHT 129
           +W  L +  ++S    +SY  QI+         G  D+R++    IR     G +S  H 
Sbjct: 9   YWDYLRIERQLSAKTLQSYQQQIVACVELLTNEGITDWRQVDGSVIRFILTQGKKSGLHE 68

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE- 188
            S A++ L+S+R  F++ +R + + +NP   +  PK      +    E + Q     S+ 
Sbjct: 69  HSLALR-LSSLRGFFQFLLRNQQIKVNPTDGISAPKAGKRLPKSIDAESISQLLDIKSKD 127

Query: 189 --GSQPRLAFEFLLYSGLRCSD 208
               + +   E +  SGLR S+
Sbjct: 128 PLSLRDKAIMELMYSSGLRLSE 149


>gi|282852712|ref|ZP_06262054.1| toxin-antitoxin system, toxin component, PIN family [Lactobacillus
           gasseri 224-1]
 gi|282556454|gb|EFB62074.1| toxin-antitoxin system, toxin component, PIN family [Lactobacillus
           gasseri 224-1]
          Length = 386

 Score = 37.0 bits (84), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 68/145 (46%), Gaps = 13/145 (8%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES-RKHTPS 131
           WL   Y+ +    +L+ N+++ F  +   I+ + G+    KITT   +  V    K  P 
Sbjct: 81  WL-ENYKNTVKVSTLS-NTKLFFRLH---ILPELGNLYIEKITTFKCQKIVNKWFKELPK 135

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT----KEDMQQFKSFWS 187
           +   +      +FK+AV  + +A NP  SV +PK + E  +P+T    K ++  F     
Sbjct: 136 TYKVYTNLASNIFKFAVNNDLIAKNPMKSVIKPKLQVEK-KPFTNFYSKNELNIFLKEAK 194

Query: 188 E--GSQPRLAFEFLLYSGLRCSDSC 210
           E  G +  + F  L Y+G+R  ++ 
Sbjct: 195 ECKGLKVYMLFRLLAYTGMRRGEAL 219


>gi|317481431|ref|ZP_07940498.1| phage integrase [Bacteroides sp. 4_1_36]
 gi|316902416|gb|EFV24303.1| phage integrase [Bacteroides sp. 4_1_36]
          Length = 385

 Score = 37.0 bits (84), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 52/213 (24%), Positives = 91/213 (42%), Gaps = 30/213 (14%)

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR--KTEGIRPW-TKEDMQQF-----K 183
           + + F  +++ +F  AVR   +A NP   + R +R    +  R + T +++++F     +
Sbjct: 166 TLVLFEETVKAIFNKAVRDGLMASNPVQELTREERFHAPDKHREYLTADELKRFLAVEPQ 225

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRA---------GVQHLQNNIFSIKTQKTGTIIT 234
           ++  E  Q   AF F   +GLR  D  R          GVQ +     S+   KT   + 
Sbjct: 226 TYMEEVVQR--AFGFSCMTGLRLGDMQRLRWSDIKDVNGVQTV-----SVIQHKTKRPVA 278

Query: 235 VELPDGFMKLLAMTP-IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRK 291
           V L    + LL   P  G++       K+  N  ++    K    KAG+ K  + H  R 
Sbjct: 279 VPLNALALSLLPPRPENGEDGIIFPLVKKPDNVAKYVRRIK---DKAGIEKDFTYHSSRH 335

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK 324
            +AT++  AGA  + +    G  ++   + Y K
Sbjct: 336 SAATLAITAGAELYSVSKILGHGSIASTQVYAK 368


>gi|290475015|ref|YP_003467899.1| putative integrase (Gifsy-1 prophage protein) [Xenorhabdus bovienii
           SS-2004]
 gi|289174332|emb|CBJ81126.1| putative integrase (Gifsy-1 prophage protein) [Xenorhabdus bovienii
           SS-2004]
          Length = 411

 Score = 37.0 bits (84), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 103/243 (42%), Gaps = 33/243 (13%)

Query: 16  TRHGKIIYYFR---KGHGRRIRL-PYPHESTFIPAYMSALTGSTPKREYINSPRK----- 66
           T  GK+I+ FR    G G RI +  YP  +T +     A+     + E  ++P+      
Sbjct: 33  TPKGKVIFQFRYRWDGKGDRIDIGTYP--ATSLKDARDAVIFYRGELEQHHNPKMVKRVL 90

Query: 67  -----KPTTLKWLISEYRKSAHWGSLAVNSRI--SFESYFDQIIRKSGDFDYRKITTKHI 119
                K  T++ LI ++ ++A  G L   + I  SFE Y   +  K G   + ++T    
Sbjct: 91  RESVLKAVTVERLIRDWWETAMKGVLVKANEILRSFELY---VFPKIGKLPHDEVTLHIW 147

Query: 120 RSGVES-RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV---ERPKRKTEGIRPWT 175
            + +E   K  PS  ++ L + +   +WAVR+    I P   V   +  ++KT       
Sbjct: 148 LALIEDVTKQHPSIGVRILNNTKNAHRWAVRRGMTKITPLSDVLISDLGRKKTNKDDSTL 207

Query: 176 KED--MQQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSI--KTQ 227
            E+  +  FK   S    PR  L  +  L  G R  +  +A V     + NI+ I  +  
Sbjct: 208 SEERLIVLFKIIDSPSYNPRNALIIKLCLLFGCRIGELLKAKVTDFDYEKNIWIIPPENH 267

Query: 228 KTG 230
           KTG
Sbjct: 268 KTG 270


>gi|281491512|ref|YP_003353492.1| phage integrase [Lactococcus lactis subsp. lactis KF147]
 gi|281375230|gb|ADA64743.1| Phage protein, integrase [Lactococcus lactis subsp. lactis KF147]
          Length = 273

 Score = 37.0 bits (84), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 70/271 (25%), Positives = 109/271 (40%), Gaps = 40/271 (14%)

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121
           N+ +   TTL+ L  +Y  S  + SL   + I F+ Y         DF Y+        S
Sbjct: 19  NTIKNYLTTLRQL-DDYIVSNDF-SLDKETLIEFKQYLK-------DFQYK--------S 61

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP-WTKEDMQ 180
           G   + +   +  Q L  + V  KW   + YV+    LSV+  K +T+  R   T+ D +
Sbjct: 62  G---KNYKLKTINQKLIIVNVYLKWLETEGYVS--GRLSVKLLKSQTKEHRESITEADYK 116

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
           +     S   + RL    +  +G+R S+ C   V+ L   I  I+ +    IIT+  P  
Sbjct: 117 RLIK-NSTTEEMRLFILVIGNTGMRISEVCSFKVEDLNKKIIVIENKGKQRIITI--PQ- 172

Query: 241 FMKLLAMTPIGK----ETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA---HGVRKFS 293
           F+K    + + K    ET F  N +       + +  K  A  A VNK     H +R + 
Sbjct: 173 FLKKQLKSYVKKAGIEETIFYKNQR------TYRVNLKKIAGIAKVNKEKVYPHSIRHYF 226

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324
           A      G  A  L    G + +     YTK
Sbjct: 227 AKSFLMNGGDATVLQQLLGHEQIATTTIYTK 257


>gi|314948558|ref|ZP_07851938.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0082]
 gi|313645055|gb|EFS09635.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0082]
          Length = 382

 Score = 37.0 bits (84), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 68/147 (46%), Gaps = 16/147 (10%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE--SRKHTP 130
           WL S Y+K+    S +  ++I F  +   I  K G+    KI T + +  V   S K + 
Sbjct: 76  WLES-YKKTVKESSYS-RTKIIFNKH---IYPKFGNIKLSKINTAYCQKVVNDWSEKGSS 130

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLS--VERPKRKTE-GIRPWTKEDMQQFKSFWS 187
                F+  M  +FK+A+     + NP L+  + +P+ KT+  ++ +TKE ++ F +  S
Sbjct: 131 KQYPLFVNYMNKVFKYAINIGLTSDNPTLNLIIPKPQIKTDKKLKLYTKEQLELFLNEVS 190

Query: 188 EGSQPRLA------FEFLLYSGLRCSD 208
           +   P         F  L +SG R  +
Sbjct: 191 QEQNPYFKNRDYTLFRLLAFSGCRIGE 217


>gi|258516772|ref|YP_003192994.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771]
 gi|257780477|gb|ACV64371.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771]
          Length = 389

 Score = 37.0 bits (84), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 3/96 (3%)

Query: 111 YRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170
           Y  +    IR   +    +P++ +     +  +F  AV+ + +  NP L VE PK K   
Sbjct: 117 YGNLQEPGIREDGKEGTLSPATVLYHHRLLTNIFNAAVKWQIILTNPALRVEAPKAKKHK 176

Query: 171 IRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRC 206
              + +ED     S   E  QP L F+ ++Y  L C
Sbjct: 177 ATSYEEEDTAALLSALEE--QP-LKFQAIVYIALGC 209


>gi|228939736|ref|ZP_04102317.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|228972599|ref|ZP_04133203.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228979206|ref|ZP_04139549.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis Bt407]
 gi|228780563|gb|EEM28787.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis Bt407]
 gi|228787140|gb|EEM35115.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228819968|gb|EEM66012.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|326940330|gb|AEA16226.1| DNA integration/recombination/inversion protein [Bacillus
           thuringiensis serovar chinensis CT-43]
          Length = 369

 Score = 37.0 bits (84), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 25/111 (22%), Positives = 52/111 (46%), Gaps = 4/111 (3%)

Query: 101 QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL---FKWAVRQEYVAINP 157
            +I   G     K+   HI+   ++      +    L   R+L      AV+Q  ++ NP
Sbjct: 95  HVIPSIGMVALHKLNVIHIQKCYKTAIDKGIANNSILLMHRILKSALNLAVKQNIISRNP 154

Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD 208
               E PK++   I+ WT+E++++F +  S+ S+  + +   + +G+R  +
Sbjct: 155 AEFAEIPKKEKTPIQTWTEEEVKKFLAH-SQESRYHIGYLLAITTGMRLGE 204


>gi|154250813|ref|YP_001411637.1| integrase family protein [Parvibaculum lavamentivorans DS-1]
 gi|154154763|gb|ABS61980.1| integrase family protein [Parvibaculum lavamentivorans DS-1]
          Length = 389

 Score = 37.0 bits (84), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 18/67 (26%), Positives = 33/67 (49%)

Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
           I  + I   ++    TP  A      +R+ F WA R+ YV  +PC  ++ PK+     R 
Sbjct: 133 IQAREISRIIDKMHKTPGEARHAFAVIRLFFNWAFRRGYVDRSPCERLQAPKQSLPRDRV 192

Query: 174 WTKEDMQ 180
            T+++++
Sbjct: 193 LTQDEIR 199


>gi|46908189|ref|YP_014578.1| integrase/recombinase XerD [Listeria monocytogenes str. 4b F2365]
 gi|47093384|ref|ZP_00231151.1| integrase/recombinase XerD [Listeria monocytogenes str. 4b H7858]
 gi|226224560|ref|YP_002758667.1| integrase/recombinase [Listeria monocytogenes Clip81459]
 gi|254825549|ref|ZP_05230550.1| integrase/recombinase XerD [Listeria monocytogenes FSL J1-194]
 gi|254852857|ref|ZP_05242205.1| integrase/recombinase XerD [Listeria monocytogenes FSL R2-503]
 gi|254931873|ref|ZP_05265232.1| integrase/recombinase XerD [Listeria monocytogenes HPB2262]
 gi|254992940|ref|ZP_05275130.1| integrase/recombinase [Listeria monocytogenes FSL J2-064]
 gi|255520096|ref|ZP_05387333.1| integrase/recombinase [Listeria monocytogenes FSL J1-175]
 gi|300763733|ref|ZP_07073730.1| tyrosine recombinase XerD [Listeria monocytogenes FSL N1-017]
 gi|71153414|sp|Q71Y59|XERD_LISMF RecName: Full=Tyrosine recombinase xerD
 gi|46881459|gb|AAT04755.1| integrase/recombinase XerD [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|47018255|gb|EAL09021.1| integrase/recombinase XerD [Listeria monocytogenes str. 4b H7858]
 gi|225877022|emb|CAS05731.1| Putative integrase/recombinase [Listeria monocytogenes serotype 4b
           str. CLIP 80459]
 gi|258606190|gb|EEW18798.1| integrase/recombinase XerD [Listeria monocytogenes FSL R2-503]
 gi|293583424|gb|EFF95456.1| integrase/recombinase XerD [Listeria monocytogenes HPB2262]
 gi|293594790|gb|EFG02551.1| integrase/recombinase XerD [Listeria monocytogenes FSL J1-194]
 gi|300515469|gb|EFK42519.1| tyrosine recombinase XerD [Listeria monocytogenes FSL N1-017]
 gi|328466303|gb|EGF37460.1| tyrosine recombinase xerD [Listeria monocytogenes 1816]
 gi|328472797|gb|EGF43646.1| tyrosine recombinase xerD [Listeria monocytogenes 220]
          Length = 297

 Score = 37.0 bits (84), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 45/213 (21%), Positives = 87/213 (40%), Gaps = 24/213 (11%)

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           S  +++ S+R  F + +    ++ +P + +E PK+     +    +D+++  S  S+ S 
Sbjct: 70  SVARYIASLRSFFHYLMHDGKMSHDPMIQIETPKQAQGLPKVLNLDDVEKLLS-SSDTST 128

Query: 192 P-----RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-------------TII 233
           P     +   E L  +GLR ++     +  L  ++  I+T   G             T++
Sbjct: 129 PLGLRDQAMMEILYATGLRVTELVSLKMDDLHLHMGFIQTIGKGDKERIIPLGKTATTVL 188

Query: 234 TVELPDGFMKLLAMTPIGKETF-FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290
              L +   KL    P  +  F F+N+  Q +    F    K  A ++G+ K  + H +R
Sbjct: 189 EKYLEEARPKL--RRPKYRNDFVFLNHHGQGLTRQGFWKILKGIAKESGIEKPITPHTLR 246

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYT 323
              AT   + GA    +    G   +   + YT
Sbjct: 247 HSFATHLLENGADLRSVQELLGHADISTTQIYT 279


>gi|126173818|ref|YP_001049967.1| phage integrase family protein [Shewanella baltica OS155]
 gi|125997023|gb|ABN61098.1| phage integrase family protein [Shewanella baltica OS155]
          Length = 376

 Score = 37.0 bits (84), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 76/188 (40%), Gaps = 18/188 (9%)

Query: 79  RKSAHWG-SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFL 137
           R + HW  S  +NS+  F  +   ++   GD     +T +HI    +    +   A + L
Sbjct: 104 RYARHWKPSTLLNSQRGFTRHIAPVL---GDVPLAALTRQHIEQWFDGMHASKGMANRLL 160

Query: 138 TSMRVLFKWAVRQEY--VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-----SEGS 190
             + V+ + A   EY     NPC   +R K  T   R  ++E++   K  W      E +
Sbjct: 161 PLLSVMMQQAEVYEYRPAQSNPCKGFKRYK-STHSERYLSEEEL---KRLWLALDSHEKA 216

Query: 191 QPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248
            P   +    L+ +G RC++ C       +   + +   KTG   TV L     +LL+  
Sbjct: 217 SPVAVMVLRLLILTGCRCNEVCSVKWADYRQGHWYLPDSKTGA-KTVFLSSFARELLSDW 275

Query: 249 PIGKETFF 256
           P   E  F
Sbjct: 276 PQVSEHIF 283


>gi|116328183|ref|YP_797903.1| tyrosine site-specific recombinase XerC [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116330907|ref|YP_800625.1| tyrosine site-specific recombinase XerC [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
 gi|116120927|gb|ABJ78970.1| Tyrosine site-specific recombinase XerC [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116124596|gb|ABJ75867.1| Tyrosine site-specific recombinase XerC [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
          Length = 311

 Score = 37.0 bits (84), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 45/203 (22%), Positives = 75/203 (36%), Gaps = 18/203 (8%)

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA- 195
           L+S+R  +K  +R + +  NP   +  PK + E  + +   + ++   F +E +   L  
Sbjct: 89  LSSLRTFYKVLLRDDQIESNPATRISFPKVRKEVPKNFRINETEEILEFEAERTSEILEI 148

Query: 196 -----FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-----TIITVELPDGFMKLL 245
                 E L  SGLR  +   A +  L  ++  +K    G          E  D   + L
Sbjct: 149 RDKAMIEVLYSSGLRVFELVNAKLGSLSKDLTVLKVLGKGQKERFVYFGKEAVDSLRRYL 208

Query: 246 AMT----PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
                  P  KE  F+N   +K+           +  K G  K  + H  R   AT   D
Sbjct: 209 EYRNVSFPDVKEI-FLNQKGKKLTTRGVRYILNERRKKMGWEKKITPHKFRHTFATDLLD 267

Query: 300 AGATAHELMATYGWKTVDQAETY 322
           AGA    +    G  ++   + Y
Sbjct: 268 AGADIRAVQELLGHSSLSTTQIY 290


>gi|94313439|ref|YP_586648.1| Tyrosine-based site-specific recombinase [Cupriavidus metallidurans
           CH34]
 gi|93357291|gb|ABF11379.1| Tyrosine-based site-specific recombinase [Cupriavidus metallidurans
           CH34]
          Length = 559

 Score = 37.0 bits (84), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 27/108 (25%), Positives = 47/108 (43%), Gaps = 15/108 (13%)

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINP-------------CLSVERPKRKTEGIRPWT 175
           +P SA   L  +  LF+W V+Q YV  NP              L V     + E +   +
Sbjct: 301 SPRSAAYSLQVLGALFRWLVQQRYVLANPFAGIKVRGGAKTAALDVSHAFSEGEWLLTRS 360

Query: 176 KEDMQQFKSFWSEGSQPRLAF--EFLLYSGLRCSDSCRAGVQHLQNNI 221
             D  ++   W   +  RL F  +F   +GLR S+   A +++++ ++
Sbjct: 361 IADGLEWSYGWEASAAQRLRFILDFTYATGLRASELVGATLRNVETDV 408


>gi|307322123|ref|ZP_07601498.1| integrase family protein [Sinorhizobium meliloti AK83]
 gi|306892248|gb|EFN23059.1| integrase family protein [Sinorhizobium meliloti AK83]
          Length = 391

 Score = 37.0 bits (84), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 8/89 (8%)

Query: 258 NNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATISADAGATAHELMATYGWK 314
           N D++ +     ++  KA+  +AG++    SAHG+R    T +A+ G    E M     K
Sbjct: 308 NVDRRALTPQSINLILKARCEQAGLDPALFSAHGLRSGYLTEAANRGIPLPEAMQQSLHK 367

Query: 315 TVDQAETYTKGADRIRLGIKNSRRISSVV 343
           +V QA +Y   A+R     KN R    +V
Sbjct: 368 SVTQAASYYNNAER-----KNGRAARLIV 391


>gi|69245161|ref|ZP_00603285.1| Phage integrase [Enterococcus faecium DO]
 gi|257879619|ref|ZP_05659272.1| phage integrase [Enterococcus faecium 1,230,933]
 gi|257890286|ref|ZP_05669939.1| phage integrase [Enterococcus faecium 1,231,410]
 gi|293560121|ref|ZP_06676625.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium E1162]
 gi|314938185|ref|ZP_07845490.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133a04]
 gi|314943771|ref|ZP_07850506.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133C]
 gi|314951140|ref|ZP_07854198.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133A]
 gi|314994622|ref|ZP_07859882.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133B]
 gi|314995568|ref|ZP_07860662.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133a01]
 gi|68196004|gb|EAN10437.1| Phage integrase [Enterococcus faecium DO]
 gi|257813847|gb|EEV42605.1| phage integrase [Enterococcus faecium 1,230,933]
 gi|257826646|gb|EEV53272.1| phage integrase [Enterococcus faecium 1,231,410]
 gi|291605988|gb|EFF35418.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium E1162]
 gi|313590156|gb|EFR69001.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133a01]
 gi|313591027|gb|EFR69872.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133B]
 gi|313596619|gb|EFR75464.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133A]
 gi|313597495|gb|EFR76340.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133C]
 gi|313642532|gb|EFS07112.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133a04]
          Length = 381

 Score = 37.0 bits (84), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 10/118 (8%)

Query: 102 IIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV 161
           I+ K G+    ++T K  +  V S   T        ++ + +F +A+    +  NP  +V
Sbjct: 99  ILPKYGNLRVNEVTVKKAQQIVNSWAETTDQYKVLHSTSKRIFSYAINLGIIETNPLDNV 158

Query: 162 ERPKRKT----EGIRPWTKEDM-QQFKSFWSEGSQPRLAFE-----FLLYSGLRCSDS 209
             PKR T    E ++ ++KE +   F    S+    R  F+     FL YSG+R S++
Sbjct: 159 LMPKRTTTKHKEKVKVYSKEQLITLFDYLNSKPETYRNDFDKTLLRFLFYSGVRISEA 216


>gi|323165681|gb|EFZ51467.1| integrase [Shigella sonnei 53G]
          Length = 356

 Score = 37.0 bits (84), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 47/215 (21%), Positives = 82/215 (38%), Gaps = 11/215 (5%)

Query: 25  FRKGHGRRIRLPYPHESTFIPAYMSALTGST--PKREYINSPRKKPTTLKWLISEYRKSA 82
           F  G  RRI +     +  I A +   +G    P    INS      TL   +  Y K  
Sbjct: 35  FGLGRDRRIAI-----TEAIQANIELFSGHKHKPLTARINS--DNSVTLHSWLDRYEKIL 87

Query: 83  HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSM 140
               +   + I++ S    I R   D     ITTK I + +     +   +SA    +++
Sbjct: 88  ASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAMLNGYIDEGKAASAKLIRSTL 147

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200
              F+ A+ + ++   P  +    K +    R    E ++ +++  S     RLA E  +
Sbjct: 148 SDAFREAIAEGHITTKPVAATRAAKSEVRRSRLTADEYLKIYQTAESSPCWLRLAMELAV 207

Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
            +G R  D C      + +    ++  KTG  I +
Sbjct: 208 VTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAI 242


>gi|296100765|ref|YP_003610911.1| putative integrase [Enterobacter cloacae subsp. cloacae ATCC 13047]
 gi|295055224|gb|ADF59962.1| putative integrase [Enterobacter cloacae subsp. cloacae ATCC 13047]
          Length = 398

 Score = 37.0 bits (84), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 64/291 (21%), Positives = 114/291 (39%), Gaps = 27/291 (9%)

Query: 49  SALTGSTPKREYINSPRKKPTTLKWLISEY----RKSAH--WGSLAVNSRISFESYFDQI 102
           S  TG+ PK+E  N  ++   T   L +++     KSA   WG          + Y D I
Sbjct: 88  SLATGTDPKQEREN--KRMELTFDELFNQHYLPWAKSAKRSWGK-------DVQRYRDHI 138

Query: 103 IRKSGDFDYRKITTKHIRSGVESRKHTPSSAI--QFLTSMRVLFKWAVRQEYVAINPCLS 160
               G      IT   I    ++   + S+A   + +  ++ +F WA RQ   +++P   
Sbjct: 139 RPAIGQRLLSDITPASILRLQQTLSTSLSAATCNRVIVLIKAVFTWAGRQSMTSVHPARV 198

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA--FEFLLYSGLRCSDSCRAGVQHLQ 218
           V+  +      R +T++++++        + P  A   + LL +GLR  +   A  +H+ 
Sbjct: 199 VQLLRENNARQRYFTEDEIRRIFLSADNDTSPVAARYVKLLLLTGLRRDELRLAKWEHVD 258

Query: 219 --NNIFSIKTQKTGTIITVELPDGFMKLLAMTPI--GKETFFINNDKQKMNATQFSIWFK 274
                  +   K G    V L    M ++   P   G    FI   KQ M  +     F+
Sbjct: 259 PVKRTLWLPETKNGYGRIVHLNSLAMDVIRTLPTQRGNPWLFIGK-KQGMPLSNPVKAFQ 317

Query: 275 AKATKAGV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
               +AG+       H  R   A +    G T +++ A  G ++   ++ Y
Sbjct: 318 RIVRRAGIFDKEVCIHTCRHSVAALIVSYGGTLYDVQAQLGHRSSQSSQRY 368


>gi|258539251|ref|YP_003173750.1| phage-related integrase [Lactobacillus rhamnosus Lc 705]
 gi|257150927|emb|CAR89899.1| Phage-related integrase [Lactobacillus rhamnosus Lc 705]
          Length = 382

 Score = 37.0 bits (84), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 29/126 (23%), Positives = 53/126 (42%), Gaps = 5/126 (3%)

Query: 98  YFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI-QFLTSMRVLFKWAVRQEYVAIN 156
           + + +I   G      I T  I+S V   + T + A  +    ++ +  +AV+ +Y+  N
Sbjct: 96  FHNHLIPMFGSKTLTAIKTGSIQSAVSQWRETTTKAYKERFIYLKKILSFAVKMQYIEKN 155

Query: 157 PCLSVERPKRKTEGIRP--WTKEDMQQFKSFWSEGSQPRLAFEFLLY--SGLRCSDSCRA 212
           P   VE P+    G  P  W  + + +F +     + P     FLL   +G+R  + C  
Sbjct: 156 PADGVELPRGVGSGKSPVYWDNKQVARFLTCIDPNNDPEKYTMFLLMVSTGIRREELCAL 215

Query: 213 GVQHLQ 218
            V  + 
Sbjct: 216 NVSDVN 221


>gi|226322740|ref|ZP_03798258.1| hypothetical protein COPCOM_00512 [Coprococcus comes ATCC 27758]
 gi|225208901|gb|EEG91255.1| hypothetical protein COPCOM_00512 [Coprococcus comes ATCC 27758]
          Length = 256

 Score = 37.0 bits (84), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 1/74 (1%)

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVER-PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196
             M  LF  A     +A NPC  V+R  K   + ++ WT E+ +QF +    GS+  + F
Sbjct: 128 NQMTALFNHAKNIYNLADNPCDKVKRMGKTSKKKMKFWTIEEYRQFMTGIEPGSKYYVLF 187

Query: 197 EFLLYSGLRCSDSC 210
           E L ++G R  ++ 
Sbjct: 188 ELLFWTGAREGEAL 201


>gi|294789571|ref|ZP_06754806.1| site-specific recombinase, phage integrase family [Simonsiella
           muelleri ATCC 29453]
 gi|294482508|gb|EFG30200.1| site-specific recombinase, phage integrase family [Simonsiella
           muelleri ATCC 29453]
          Length = 247

 Score = 37.0 bits (84), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 37/170 (21%), Positives = 65/170 (38%), Gaps = 8/170 (4%)

Query: 108 DFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI---NPCLSVERP 164
           D    +IT +H+   +  R   PSSA   +     +F+ A +  Y+     NP   V+  
Sbjct: 9   DAPLHEITPQHLNRFLAWRSSAPSSANVEIAFFSAIFEHAQKSGYIDFEKKNPVKGVK-- 66

Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223
           K K E    +  + +  F   +    Q  R   +  L +G R  D C      + + I +
Sbjct: 67  KNKIEKRDNYINDKL--FDVVYEHADQQMRDLMDIALLTGQRPIDICSLHTSQISDGILN 124

Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF 273
           IK  KT   +  E+     +++          F+N   + +N    + WF
Sbjct: 125 IKQVKTSARLRFEISGSLKEIIDRIAPENGFLFLNKHGKPLNRQLITNWF 174


>gi|332093830|gb|EGI98884.1| integrase [Shigella boydii 5216-82]
          Length = 256

 Score = 36.6 bits (83), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 28/130 (21%), Positives = 54/130 (41%), Gaps = 2/130 (1%)

Query: 108 DFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165
           D     ITTK I + +     +   +SA    +++   F+ A+ + ++  NP  +    K
Sbjct: 13  DAPLEDITTKEIAAMLNGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNPVAATRAAK 72

Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225
            +    R    E ++ +++  S     RLA E  + +G R  D C      + +    ++
Sbjct: 73  SEVRRSRLTADEYLKIYQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVE 132

Query: 226 TQKTGTIITV 235
             KTG  I +
Sbjct: 133 QSKTGVKIAI 142


>gi|295085443|emb|CBK66966.1| tyrosine recombinase XerC subunit [Bacteroides xylanisolvens XB1A]
          Length = 293

 Score = 36.6 bits (83), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 53/241 (21%), Positives = 94/241 (39%), Gaps = 29/241 (12%)

Query: 107 GDFDYRKITTKHIRSGVES---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163
           G F+  ++  + IR  + S   + +T +S  + L+S+R  +K+ +RQ    I+P   ++ 
Sbjct: 40  GKFNPLEVEAELIREWIVSLMDKGYTSTSVNRKLSSLRTFYKYLLRQGETTIDPLRKIKG 99

Query: 164 PKRK---------TEGIRPWTKEDM-QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG 213
           PK K          E  R   + D  + FK     G + RL  E    +G+R S+     
Sbjct: 100 PKNKKPLPVFLKENEMNRLLDETDFGEGFK-----GCRDRLIIEMFYATGMRLSELIGLD 154

Query: 214 VQHLQNNIFSIK-TQKTGTIITVELPDGFMKLL--------AMTPIGKETFFINNDKQKM 264
            + +  +   +K T K      +   D   +L+           P   E FFI  + +++
Sbjct: 155 NKDVDFSASLLKVTGKRNKQRLIPFGDELQELMLEYISVRNETIPERSEAFFIRENGERL 214

Query: 265 NATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
                    K   +K      KS H +R   AT   +  A    +    G +++   E Y
Sbjct: 215 YKNLVYNLVKRNLSKVATLKKKSPHVLRHTFATTMLNNEAELGAVKELLGHESITTTEIY 274

Query: 323 T 323
           T
Sbjct: 275 T 275


>gi|295426297|ref|ZP_06818957.1| tyrosine recombinase XerD [Lactobacillus amylolyticus DSM 11664]
 gi|295064036|gb|EFG54984.1| tyrosine recombinase XerD [Lactobacillus amylolyticus DSM 11664]
          Length = 299

 Score = 36.6 bits (83), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 39/203 (19%), Positives = 85/203 (41%), Gaps = 19/203 (9%)

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLA 195
           +R  ++W  RQ    +NP + ++ PK++       T+++M +  +  +     G + R  
Sbjct: 79  LRKFYQWLARQNIQKLNPMIEIDSPKKQRRLPVALTQDEMDRLLAAPNVEKKLGLRDRAL 138

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--------TIITVELPDGFMKLLAM 247
            E +  +G+R S+     ++ +  ++  IK    G        + I ++    + K +  
Sbjct: 139 LEMMYATGMRVSEVINLQLEDVHPDLKLIKVFGKGSKERLVPVSNIALDWLAKYEKEVRE 198

Query: 248 TPI---GKETFFINNDKQKMNATQFSIW--FKAKATKAGVNKSA--HGVRKFSATISADA 300
           + +   G+ T F+  + +  + T+ ++W   K     A +NK    H +R   AT   + 
Sbjct: 199 SLVLKQGRNTEFVFLNNRGGSLTRQAVWQIIKHYCQLANINKDVTPHTLRHTFATHLLEN 258

Query: 301 GATAHELMATYGWKTVDQAETYT 323
           GA    +    G   +   + YT
Sbjct: 259 GADLRVVQEILGHSDISTTQIYT 281


>gi|71064633|ref|YP_263360.1| phage integrase [Psychrobacter arcticus 273-4]
 gi|71037618|gb|AAZ17926.1| probable phage integrase [Psychrobacter arcticus 273-4]
          Length = 312

 Score = 36.6 bits (83), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 48/218 (22%), Positives = 78/218 (35%), Gaps = 20/218 (9%)

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KS 184
           TP +  + L+S+R  + W +       NPC  ++ PK      +   + D+        S
Sbjct: 80  TPRTQARMLSSLRQFYLWMIASNLREDNPCERIKSPKLGRPLPKDLAEADVDNLLAAPDS 139

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI----FSIKTQKTGTIITVE---- 236
             + G + +   E L   GLR S+     ++ +  N      + K  KT  +   E    
Sbjct: 140 STALGLRDKAMLEVLYACGLRVSELVNLSLEQVNLNSGWLQITGKGNKTRLVPLGEYASD 199

Query: 237 -----LPDGFMKLLAMTPIGK-ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288
                L  G   L+A    G  +  F+      M    F    K  A  A ++K  S H 
Sbjct: 200 ALEDYLTHGRGDLIAHLKAGNCQAVFLTAQGGYMTRQNFWYLLKKYAKVASIDKALSPHT 259

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           +R   AT   + GA    +    G   +   + YT  A
Sbjct: 260 LRHAFATHLLNHGADLRSVQLLLGHSNLSTTQIYTHVA 297


>gi|299530798|ref|ZP_07044213.1| tyrosine recombinase XerD [Comamonas testosteroni S44]
 gi|298721314|gb|EFI62256.1| tyrosine recombinase XerD [Comamonas testosteroni S44]
          Length = 318

 Score = 36.6 bits (83), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 56/223 (25%), Positives = 90/223 (40%), Gaps = 23/223 (10%)

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINP---CLSVERPKRKTEGIRPWTKEDM 179
           VE  K T S+  + LT +R  F WA+R++ +A +P    L+ ++P R  + +     E +
Sbjct: 85  VEGTKATSSN--RRLTVLRRYFHWALREKRIAADPTVRMLAAKQPPRMPKTLTQEQVEAL 142

Query: 180 QQFKSFWSE-GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL- 237
                  S  G + R   E +  SGLR S+    GV+  + ++ S   + TG      L 
Sbjct: 143 LDAPDVDSPLGLRDRAMLELMYASGLRVSELV--GVRMHELDLRSGVLRVTGKGRKERLV 200

Query: 238 PDG---------FMKLLAMTPIG---KETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284
           P G         +++      +G    E  F+      M+   F +  K  A  AG+N  
Sbjct: 201 PFGQEAQHWLERYLQQARAAILGGQQTEEVFVTQRGAGMSRVMFWVIVKKCAQIAGINSP 260

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            S H +R   AT   + GA    +    G   +     YT  A
Sbjct: 261 LSPHTLRHAFATHLLNHGADLRVVQMLLGHADISTTTIYTHVA 303


>gi|258616770|ref|ZP_05714540.1| phage integrase family site specific recombinase [Enterococcus
           faecium DO]
          Length = 298

 Score = 36.6 bits (83), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 54/119 (45%), Gaps = 10/119 (8%)

Query: 102 IIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV 161
           I+ K G+    ++T K  +  V S   T        ++ + +F +A+    +  NP  +V
Sbjct: 99  ILPKYGNLRVNEVTVKKAQQIVNSWAETTDQYKVLHSTSKRIFSYAINLGIIETNPLDNV 158

Query: 162 ERPKRKT----EGIRPWTKEDM-QQFKSFWSEGSQPRLAFE-----FLLYSGLRCSDSC 210
             PKR T    E ++ ++KE +   F    S+    R  F+     FL YSG+R S++ 
Sbjct: 159 LMPKRTTTKHKEKVKVYSKEQLITLFDYLNSKPETYRNDFDKTLLRFLFYSGVRISEAL 217


>gi|291514360|emb|CBK63570.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
          Length = 368

 Score = 36.6 bits (83), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 45/215 (20%), Positives = 86/215 (40%), Gaps = 15/215 (6%)

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           SS     TS++++   A++ E V  +P  SV+ P+         T+E++++         
Sbjct: 155 SSQHNIYTSLKIIIHQAIKDELVTSDPTKSVDPPRMVLPHKEHLTEEELKRLIQTPCPKE 214

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHL-------QNNIFSIKTQKTGTIITVELPDGFMK 243
             + +F F  ++GLR SD     VQ L        NN   I  ++  T I   +P     
Sbjct: 215 MVKRSFLFCCFTGLRISD-----VQKLIWKEVVTTNNETYINFRQKKTKIENYVPLS-EN 268

Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301
            +++ P  +E    ++       +      K   + +G++K  + H  R   AT+  ++G
Sbjct: 269 AISVLPSKRENTETDSVFDLPKESTIRKVLKKWVSDSGIDKHITFHCARHTCATLLLNSG 328

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
              + +    G   +     Y K  D+ +    NS
Sbjct: 329 VDIYTVKEILGHTDIGTTMQYAKVVDKTKREAVNS 363


>gi|24112307|ref|NP_706817.1| putative integrase encoded by prophage CP-933K; partial [Shigella
           flexneri 2a str. 301]
 gi|30062420|ref|NP_836591.1| putative integrase encoded by prophage CP-933K; partial [Shigella
           flexneri 2a str. 2457T]
 gi|217326121|ref|ZP_03442205.1| phage integrase family protein [Escherichia coli O157:H7 str.
           TW14588]
 gi|254791924|ref|YP_003076761.1| integrase encoded by prophage CP-933K [Escherichia coli O157:H7
           str. TW14359]
 gi|261224477|ref|ZP_05938758.1| integrase encoded by prophage CP-933K [Escherichia coli O157:H7
           str. FRIK2000]
 gi|261254531|ref|ZP_05947064.1| integrase encoded by prophage CP-933K [Escherichia coli O157:H7
           str. FRIK966]
 gi|24051165|gb|AAN42524.1| putative integrase encoded by prophage CP-933K; partial [Shigella
           flexneri 2a str. 301]
 gi|30040666|gb|AAP16397.1| putative integrase encoded by prophage CP-933K; partial [Shigella
           flexneri 2a str. 2457T]
 gi|217322342|gb|EEC30766.1| phage integrase family protein [Escherichia coli O157:H7 str.
           TW14588]
 gi|254591324|gb|ACT70685.1| integrase encoded by prophage CP-933K [Escherichia coli O157:H7
           str. TW14359]
 gi|313648473|gb|EFS12916.1| integrase [Shigella flexneri 2a str. 2457T]
 gi|320193173|gb|EFW67813.1| Phage integrase [Escherichia coli O157:H7 str. EC1212]
          Length = 256

 Score = 36.6 bits (83), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 28/130 (21%), Positives = 54/130 (41%), Gaps = 2/130 (1%)

Query: 108 DFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165
           D     ITTK I + +     +   +SA    +++   F+ A+ + ++  NP  +    K
Sbjct: 13  DAPLEDITTKEIAAMLNGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNPVAATRAAK 72

Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225
            +    R    E ++ +++  S     RLA E  + +G R  D C      + +    ++
Sbjct: 73  SEVRRSRLTADEYLKIYQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVE 132

Query: 226 TQKTGTIITV 235
             KTG  I +
Sbjct: 133 QSKTGVKIAI 142


>gi|254426076|ref|ZP_05039793.1| Phage integrase, N-terminal SAM-like domain protein [Synechococcus
           sp. PCC 7335]
 gi|196188499|gb|EDX83464.1| Phage integrase, N-terminal SAM-like domain protein [Synechococcus
           sp. PCC 7335]
          Length = 326

 Score = 36.6 bits (83), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 29/123 (23%), Positives = 53/123 (43%), Gaps = 10/123 (8%)

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS- 187
           +P++  Q + S++  FKW   ++Y++ NP L++E+ K   +  +P    D  +  + +  
Sbjct: 91  SPATINQSINSLKSFFKWLTVKDYISRNPTLTIEQLK---DAPKPPKDLDEAEVDALFDG 147

Query: 188 -----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL-PDGF 241
                E     LA   LL  GLR  +     ++        +   K G+   V L P+  
Sbjct: 148 LNYRGESEVRDLAILQLLSHGLRAGEVSALNIEDYDGKRVHVLGAKWGSDGKVPLKPEAI 207

Query: 242 MKL 244
           M L
Sbjct: 208 MAL 210


>gi|187251859|ref|YP_001876341.1| integrase family protein [Elusimicrobium minutum Pei191]
 gi|186972019|gb|ACC99004.1| Integrase family protein [Elusimicrobium minutum Pei191]
          Length = 337

 Score = 36.6 bits (83), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 28/109 (25%), Positives = 50/109 (45%), Gaps = 3/109 (2%)

Query: 94  SFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQE 151
           +F+  FD I+ + G      ITT+ I+        + +PS+A +  +  R +   A+  +
Sbjct: 80  TFKYTFDIILSRFGHMKVADITTEDIQKFYNDTWERTSPSTANRHFSLFRAIINKALNLK 139

Query: 152 -YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199
            Y   NPC+ V R +      + +TKED++          +P +AF  L
Sbjct: 140 LYKGQNPCIGVVRQRDNPPRDKYFTKEDIKSLLVTAENRLKPIIAFAVL 188


>gi|317055405|ref|YP_004103872.1| integrase family protein [Ruminococcus albus 7]
 gi|315447674|gb|ADU21238.1| integrase family protein [Ruminococcus albus 7]
          Length = 396

 Score = 36.6 bits (83), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 29/111 (26%), Positives = 49/111 (44%), Gaps = 12/111 (10%)

Query: 107 GDFDYRKITTKHIRSGVES-----------RKHTPSSAIQFLTSMRVLFKWAVRQEYVAI 155
           G     KIT + I++ V S           +   P +    L+ +  +F +AV+   V  
Sbjct: 105 GHMRMDKITPRQIQAFVNSLSREGANERTGKPLAPKTIRHNLSFVSDVFSYAVKMGVVND 164

Query: 156 NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-EGSQPRLAFEFLLYSGLR 205
           NPC  V  PK      + +T E +Q+F +  + E  + R  F  +++SG R
Sbjct: 165 NPCSKVTLPKNNQAEKKIYTPEQVQRFLTLLNDEPLKYRTFFNLMIFSGFR 215


>gi|237717383|ref|ZP_04547864.1| integrase [Bacteroides sp. D1]
 gi|229443366|gb|EEO49157.1| integrase [Bacteroides sp. D1]
          Length = 292

 Score = 36.6 bits (83), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 53/241 (21%), Positives = 94/241 (39%), Gaps = 29/241 (12%)

Query: 107 GDFDYRKITTKHIRSGVES---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163
           G F+  ++  + IR  + S   + +T +S  + L+S+R  +K+ +RQ    I+P   ++ 
Sbjct: 39  GKFNPLEVEAELIREWIVSLMDKGYTSTSVNRKLSSLRTFYKYLLRQGETTIDPLRKIKG 98

Query: 164 PKRK---------TEGIRPWTKEDM-QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG 213
           PK K          E  R   + D  + FK     G + RL  E    +G+R S+     
Sbjct: 99  PKNKKPLPVFLKENEMNRLLDETDFGEGFK-----GCRDRLIIEMFYATGMRLSELIGLD 153

Query: 214 VQHLQNNIFSIK-TQKTGTIITVELPDGFMKLL--------AMTPIGKETFFINNDKQKM 264
            + +  +   +K T K      +   D   +L+           P   E FFI  + +++
Sbjct: 154 NKDVDFSASLLKVTGKRNKQRLIPFGDELQELMLEYINVRNETIPERSEAFFIRENGERL 213

Query: 265 NATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
                    K   +K      KS H +R   AT   +  A    +    G +++   E Y
Sbjct: 214 YKNLVYNLVKRNLSKVATLKKKSPHVLRHTFATTMLNNEAELGAVKELLGHESITTTEIY 273

Query: 323 T 323
           T
Sbjct: 274 T 274


>gi|157370504|ref|YP_001478493.1| integrase family protein [Serratia proteamaculans 568]
 gi|157322268|gb|ABV41365.1| integrase family protein [Serratia proteamaculans 568]
          Length = 428

 Score = 36.6 bits (83), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 41/179 (22%), Positives = 74/179 (41%), Gaps = 21/179 (11%)

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195
           ++  MR +F +AV   Y+A NP   V   K++     P TKE+ Q+         Q R  
Sbjct: 164 YMFCMRAIFDFAVSNGYIANNPFEGVSPLKKQRPAPDPLTKEEYQRV-IVSCPTQQMRNM 222

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---ITVELPDGFMKLLAMTPIGK 252
               + +GLR  +      + L    ++I   +  ++    T+   D  M+ + +T +  
Sbjct: 223 ITLAINTGLRHGELYALAWEDLDTQNWTISISRNLSLKEHFTLPKTDAGMRTIQLTTVAI 282

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRK-------FSATISADAGATA 304
           E       K +M  T+ S      A +  VN   +G ++       FS  I++  G++A
Sbjct: 283 EAI-----KSQMALTRLS-----NAHRVTVNLREYGKKRTDDCTFIFSPRITSRNGSSA 331


>gi|262406148|ref|ZP_06082698.1| tyrosine recombinase XerC [Bacteroides sp. 2_1_22]
 gi|294644043|ref|ZP_06721820.1| tyrosine recombinase XerC [Bacteroides ovatus SD CC 2a]
 gi|294810195|ref|ZP_06768862.1| tyrosine recombinase XerC [Bacteroides xylanisolvens SD CC 1b]
 gi|298483048|ref|ZP_07001229.1| tyrosine recombinase XerC [Bacteroides sp. D22]
 gi|262357023|gb|EEZ06113.1| tyrosine recombinase XerC [Bacteroides sp. 2_1_22]
 gi|292640567|gb|EFF58808.1| tyrosine recombinase XerC [Bacteroides ovatus SD CC 2a]
 gi|294442607|gb|EFG11407.1| tyrosine recombinase XerC [Bacteroides xylanisolvens SD CC 1b]
 gi|298270792|gb|EFI12372.1| tyrosine recombinase XerC [Bacteroides sp. D22]
          Length = 293

 Score = 36.6 bits (83), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 53/241 (21%), Positives = 94/241 (39%), Gaps = 29/241 (12%)

Query: 107 GDFDYRKITTKHIRSGVES---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163
           G F+  ++  + IR  + S   + +T +S  + L+S+R  +K+ +RQ    I+P   ++ 
Sbjct: 40  GKFNPLEVEAELIREWIVSLMDKGYTSTSVNRKLSSLRTFYKYLLRQGETTIDPLRKIKG 99

Query: 164 PKRK---------TEGIRPWTKEDM-QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG 213
           PK K          E  R   + D  + FK     G + RL  E    +G+R S+     
Sbjct: 100 PKNKKPLPVFLKENEMNRLLDETDFGEGFK-----GCRDRLIIEMFYATGMRLSELIGLD 154

Query: 214 VQHLQNNIFSIK-TQKTGTIITVELPDGFMKLL--------AMTPIGKETFFINNDKQKM 264
            + +  +   +K T K      +   D   +L+           P   E FFI  + +++
Sbjct: 155 NKDVDFSASLLKVTGKRNKQRLIPFGDELQELMLEYINVRNETIPERSEAFFIRENGERL 214

Query: 265 NATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
                    K   +K      KS H +R   AT   +  A    +    G +++   E Y
Sbjct: 215 YKNLVYNLVKRNLSKVATLKKKSPHVLRHTFATTMLNNEAELGAVKELLGHESITTTEIY 274

Query: 323 T 323
           T
Sbjct: 275 T 275


>gi|260559718|ref|ZP_05831898.1| phage integrase [Enterococcus faecium C68]
 gi|260074386|gb|EEW62708.1| phage integrase [Enterococcus faecium C68]
          Length = 244

 Score = 36.6 bits (83), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 54/119 (45%), Gaps = 10/119 (8%)

Query: 102 IIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV 161
           I+ K G+    ++T K  +  V S   T        ++ + +F +A+    +  NP  +V
Sbjct: 99  ILPKYGNLRVNEVTVKKAQQIVNSWAETTDQYKVLHSTSKRIFSYAINLGIIETNPLDNV 158

Query: 162 ERPKRKT----EGIRPWTKEDM-QQFKSFWSEGSQPRLAFE-----FLLYSGLRCSDSC 210
             PKR T    E ++ ++KE +   F    S+    R  F+     FL YSG+R S++ 
Sbjct: 159 LMPKRTTTKHKEKVKVYSKEQLITLFDYLNSKPETYRNDFDKTLLRFLFYSGVRISEAL 217


>gi|218699138|ref|YP_002406767.1| phage integrase [Escherichia coli IAI39]
 gi|218369124|emb|CAR16878.1| phage integrase [Escherichia coli IAI39]
          Length = 256

 Score = 36.6 bits (83), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 31/141 (21%), Positives = 57/141 (40%), Gaps = 2/141 (1%)

Query: 97  SYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVA 154
           S    I R   D     ITTK I + +     +   +SA    +++   F+ A+ + ++ 
Sbjct: 2   SKIKAIRRGLTDAPLEDITTKEIAAMLNGYIDEGKAASAKLIRSTLSDAFREAIAEGHIT 61

Query: 155 INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGV 214
            NP  +    K +    R    E ++ +++  S     RLA E  + +G R  D C    
Sbjct: 62  TNPVAATRAAKSEVRRSRLTADEYLKIYQAAESSPCWLRLAMELAVVTGQRVGDLCEMKW 121

Query: 215 QHLQNNIFSIKTQKTGTIITV 235
             + +    ++  KTG  I +
Sbjct: 122 SDIVDGYLYVEQSKTGVKIAI 142


>gi|193069614|ref|ZP_03050567.1| integrase [Escherichia coli E110019]
 gi|192957161|gb|EDV87611.1| integrase [Escherichia coli E110019]
          Length = 256

 Score = 36.6 bits (83), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 42/210 (20%), Positives = 82/210 (39%), Gaps = 26/210 (12%)

Query: 108 DFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165
           D     ITTK I + +     +   +SA    +++   F+ A+ + ++  NP  +    K
Sbjct: 13  DAPLEDITTKKIAAMLNGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNPVAATRAAK 72

Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225
            +    R    E ++ +++  S     RLA E  + +G R  D C      + +    ++
Sbjct: 73  SEVRRSRLTADEYLKIYQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVE 132

Query: 226 TQKTGTIITV--------------ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI 271
             KTG  I +              E  D   K+L     G ET   +  ++ +++   S 
Sbjct: 133 QSKTGVKIAIPTTLHVDALGISMKETLDKCKKIL-----GGETIIASTRREPLSSGTVSR 187

Query: 272 WFKAKATKAGVN-----KSAHGVRKFSATI 296
           +F      +G++      + H +R  SA +
Sbjct: 188 YFMRARKASGLSFEGDPPTFHELRSLSARL 217


>gi|77410914|ref|ZP_00787270.1| site-specific recombinase, phage integrase family [Streptococcus
           agalactiae CJB111]
 gi|77162969|gb|EAO73924.1| site-specific recombinase, phage integrase family [Streptococcus
           agalactiae CJB111]
          Length = 384

 Score = 36.6 bits (83), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 27/108 (25%), Positives = 49/108 (45%), Gaps = 3/108 (2%)

Query: 101 QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
            I+   GD    KI+    ++ +  +  T  +  Q  +    +F +A++ + +  NP   
Sbjct: 100 HILPVMGDLPISKISPLDCQNFITEKAKTFKNIKQIKSYTGKIFDFAIKMKLLKHNPMAE 159

Query: 161 VERPKRKTEGIRP-WTKEDMQQFKS--FWSEGSQPRLAFEFLLYSGLR 205
           +  PKRK   I   WT +++++F +     E  +    F  L YSGLR
Sbjct: 160 IIMPKRKKTQIENYWTVQELKEFLAIVLQEEPYKHYALFRLLAYSGLR 207


>gi|265753988|ref|ZP_06089343.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|263235702|gb|EEZ21226.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 390

 Score = 36.6 bits (83), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 52/218 (23%), Positives = 87/218 (39%), Gaps = 17/218 (7%)

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR--KTEGIRPW-TKEDM 179
           +E R  + ++A ++L         AVRQ  +  NP   ++  +R    +G + + T E++
Sbjct: 164 IEPRPISQNTASRYLGMFSTTLNNAVRQGIIRNNPMKELDAKERIQPKDGKKEYLTIEEL 223

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL------QNNIFSIKTQKTGTII 233
           +   +  S   + + AF F  ++GLR SD  +    H+      +     ++ QKT   +
Sbjct: 224 KALMATDSYRPEVKQAFIFACFTGLRLSDMYKLAPIHIFKTPDGKGEYIDMEMQKTEKPV 283

Query: 234 TVELPDGFMKLLAMTPIGKET-FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290
            + L +   + L   P G  T FF     Q +       W +A    AGV K  S H  R
Sbjct: 284 IIPLSEEAKRWLP-KPKGITTPFFDIPTTQTVIGRALRKWAEA----AGVEKHISFHCSR 338

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
               T+    GA         G   +   E Y K  D+
Sbjct: 339 HTFGTMMLTLGADLFTTSKLMGHTNIQTTEIYAKIVDK 376


>gi|221068555|ref|ZP_03544660.1| tyrosine recombinase XerD [Comamonas testosteroni KF-1]
 gi|220713578|gb|EED68946.1| tyrosine recombinase XerD [Comamonas testosteroni KF-1]
          Length = 318

 Score = 36.6 bits (83), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 54/223 (24%), Positives = 90/223 (40%), Gaps = 23/223 (10%)

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           VE  K T S+  + LT +R  F WA+R++ +A +P + +   K+     +  T+E ++  
Sbjct: 85  VEGTKATSSN--RRLTVLRRYFHWALREKRIAADPTVRMLAAKQPPRTPKTLTQEQVEAL 142

Query: 183 KSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL- 237
                   + G + R   E +  SGLR S+    GV+  + ++ S   + TG      L 
Sbjct: 143 LDAPDVETALGLRDRAMLELMYASGLRVSELV--GVRMHELDLRSGVLRVTGKGRKERLV 200

Query: 238 PDG---------FMKLLAMTPIG---KETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284
           P G         +++      +G    E  F+      M+   F +  K  A  AG+N  
Sbjct: 201 PFGQEAQHWLERYLQQARAAILGGQQTEEVFVTQRGAGMSRVMFWVIVKKCAQIAGINSP 260

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            S H +R   AT   + GA    +    G   +     YT  A
Sbjct: 261 LSPHTLRHAFATHLLNHGADLRVVQMLLGHADISTTTIYTHVA 303


>gi|301066065|ref|YP_003788088.1| site-specific recombinase, prophage lsa1 integrase [Lactobacillus
           casei str. Zhang]
 gi|300438472|gb|ADK18238.1| Site-specific recombinase, prophage lsa1 integrase [Lactobacillus
           casei str. Zhang]
          Length = 382

 Score = 36.6 bits (83), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 33/139 (23%), Positives = 59/139 (42%), Gaps = 8/139 (5%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI-QFLTSMRVL 143
           GS A  ++  F ++   +I   G      I T  I+S V   + T + A  +    ++ +
Sbjct: 86  GSTAYKTKQLFNNH---LIPMFGSKTLTAIKTGSIQSAVSQWRETTTKAYKERFIYLKKI 142

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRP--WTKEDMQQFKSFWSEGSQPRLAFEFLLY 201
             +AV+ +Y+  NP   VE P+    G  P  W  + + +F +     + P     FLL 
Sbjct: 143 LSFAVKMQYIEKNPADGVELPRGVRSGKSPVYWDNKQVARFLTCIDPNNDPEKYTMFLLM 202

Query: 202 --SGLRCSDSCRAGVQHLQ 218
             +G+R  + C   V  + 
Sbjct: 203 VSTGIRREELCALNVSDVN 221


>gi|311110137|ref|ZP_07711534.1| site-specific recombinase, phage integrase family [Lactobacillus
           gasseri MV-22]
 gi|311065291|gb|EFQ45631.1| site-specific recombinase, phage integrase family [Lactobacillus
           gasseri MV-22]
          Length = 390

 Score = 36.6 bits (83), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 40/182 (21%), Positives = 85/182 (46%), Gaps = 25/182 (13%)

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI--- 114
           +E +N    KP T+  LI + + +     LA+ +R S+ S  D I   S DF  + +   
Sbjct: 58  QEKLNIQSIKPITMDKLIDKLKNNLDKQGLAIKTRNSYFSTLDII---SKDFKDKLVASV 114

Query: 115 -TTK---HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV------ERP 164
            TT+   ++   +  RK +  +   +L  ++ +F++A++  Y+  +P L +      ER 
Sbjct: 115 NTTELNVYLNDLLYERKLSNGTIKIYLLQLKKIFEYAIQFGYIKKDPTLKIKINYKNERA 174

Query: 165 KRKTEGIRPW--TKEDMQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNN 220
           K+++  +  W  T +++    ++     +      F++L  +G+R  ++       L NN
Sbjct: 175 KKQSR-VENWYLTDDELNTVLTYCLHKKREDYYHLFKWLYLTGMRVGEATAL----LINN 229

Query: 221 IF 222
           +F
Sbjct: 230 VF 231


>gi|330685662|gb|EGG97303.1| tyrosine recombinase XerC [Staphylococcus epidermidis VCU121]
          Length = 297

 Score = 36.6 bits (83), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 27/143 (18%), Positives = 68/143 (47%), Gaps = 6/143 (4%)

Query: 93  ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEY 152
           + F  +  Q      DF+Y+    ++  S + S+    ++  + ++++R  +++ + Q+ 
Sbjct: 31  VQFNDFLYQESLDLNDFEYKD--ARNYLSFLYSKNLKRTTVSRKISTLRTFYEYWMTQDE 88

Query: 153 VAINPCLSVERPKRKTEGIRPWTKEDMQQ-FKSFWSE---GSQPRLAFEFLLYSGLRCSD 208
             +NP + +  PK++    + + +E+M+  FK+  ++   G + ++  E L  +G+R S+
Sbjct: 89  SVVNPFVQLVHPKKEQYLPQFFYEEEMEALFKTVETDSKKGMRDKVILELLYATGIRVSE 148

Query: 209 SCRAGVQHLQNNIFSIKTQKTGT 231
                 Q L   +  +K    G 
Sbjct: 149 LVHIKTQDLDMKLPGVKVLGKGN 171


>gi|71042119|pdb|1Z19|A Chain A, Crystal Structure Of A Lambda Integrase(75-356) Dimer
           Bound To A Coc' Core Site
 gi|71042120|pdb|1Z19|B Chain B, Crystal Structure Of A Lambda Integrase(75-356) Dimer
           Bound To A Coc' Core Site
          Length = 283

 Score = 36.6 bits (83), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 32/145 (22%), Positives = 59/145 (40%), Gaps = 2/145 (1%)

Query: 93  ISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQ 150
           I++ S    I R   D     ITTK I + +     +   +SA    +++   F+ A+ +
Sbjct: 25  INYXSKIKAIRRGLPDAPLEDITTKEIAAXLNGYIDEGKAASAKLIRSTLSDAFREAIAE 84

Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210
            ++  N   +    K K    R    E ++ +++  S     RLA E  + +G R  D C
Sbjct: 85  GHITTNHVAATRAAKSKVRRSRLTADEYLKIYQAAESSPCWLRLAXELAVVTGQRVGDLC 144

Query: 211 RAGVQHLQNNIFSIKTQKTGTIITV 235
                 + +    ++  KTG  I +
Sbjct: 145 EXKWSDIVDGYLYVEQSKTGVKIAI 169


>gi|326566337|gb|EGE16487.1| phage integrase [Moraxella catarrhalis BC1]
          Length = 397

 Score = 36.6 bits (83), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 67/245 (27%), Positives = 101/245 (41%), Gaps = 42/245 (17%)

Query: 19  GKIIYYFR---KGHGRRIRL-PYPHEST------FIPAYMSALTGSTPKRE-------YI 61
           GKI++  R    G  +R  L  YP  S        + A    L G  PK E       YI
Sbjct: 35  GKIVFQLRYRFNGKLKRFDLGVYPLISLKQAREKSLSAKTQLLHGKDPKLEEQIAKQAYI 94

Query: 62  NSPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTK-HI 119
           N+       L+W    Y KSA      A + + SFE Y   +I   G      IT + +I
Sbjct: 95  NADTFYECFLQW----YDKSAVITKKQASDIKRSFELYVFPVI---GSLPINDITLQQYI 147

Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE-------RPKRKTEGIR 172
                  + TP  A + LT+ + + KWA ++E V  N    +E       R KRK    R
Sbjct: 148 IIIESISEKTPGIAERILTNTKQMLKWAKKREIVTHNILADLELSDFNLVRVKRK----R 203

Query: 173 PWTKEDMQQF-KSFWSE--GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI--KTQ 227
             + +++  F K+ +      + RLA E  L  G R  +  RA +   Q+ ++++  +  
Sbjct: 204 YLSDDEIILFYKALYGSKISYRNRLATELALMFGCRGIELRRAKITDFQDGVWTVPPENH 263

Query: 228 KTGTI 232
           K G I
Sbjct: 264 KVGHI 268


>gi|289435303|ref|YP_003465175.1| integrase/recombinase XerD [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289171547|emb|CBH28093.1| integrase/recombinase XerD [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
          Length = 297

 Score = 36.6 bits (83), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 45/213 (21%), Positives = 86/213 (40%), Gaps = 24/213 (11%)

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           S  +++ S+R  F + +    ++ +P + +E PK+     +    +D++   S  S+ S 
Sbjct: 70  SVARYIASLRSFFHYLMHDGKMSHDPMIQIETPKQAQGLPKVLNLDDVELLLS-SSDTST 128

Query: 192 P-----RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-------------TII 233
           P     +   E L  +GLR ++  +  +  L   +  I+T   G             T++
Sbjct: 129 PLGLRDQAMMEILYATGLRVTELVQLKMDDLHLQMGFIQTIGKGDKERIIPLGKTATTVL 188

Query: 234 TVELPDGFMKLLAMTPIGKETF-FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290
              L +   KL    P  +  F F+N+  Q +    F    K  A ++G+ K  + H +R
Sbjct: 189 EQYLEEARPKL--RRPKYRNDFVFLNHHGQGLTRQGFWKILKGIAKESGIEKPITPHTLR 246

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYT 323
              AT   + GA    +    G   +   + YT
Sbjct: 247 HSFATHLLENGADLRSVQELLGHADISTTQIYT 279


>gi|309807082|ref|ZP_07701061.1| tyrosine recombinase XerD [Lactobacillus iners LactinV 03V1-b]
 gi|309809309|ref|ZP_07703178.1| tyrosine recombinase XerD [Lactobacillus iners SPIN 2503V10-D]
 gi|325911997|ref|ZP_08174399.1| tyrosine recombinase XerD [Lactobacillus iners UPII 143-D]
 gi|325912838|ref|ZP_08175216.1| tyrosine recombinase XerD [Lactobacillus iners UPII 60-B]
 gi|329921320|ref|ZP_08277758.1| tyrosine recombinase XerD [Lactobacillus iners SPIN 1401G]
 gi|308166512|gb|EFO68712.1| tyrosine recombinase XerD [Lactobacillus iners LactinV 03V1-b]
 gi|308170422|gb|EFO72446.1| tyrosine recombinase XerD [Lactobacillus iners SPIN 2503V10-D]
 gi|325476182|gb|EGC79346.1| tyrosine recombinase XerD [Lactobacillus iners UPII 143-D]
 gi|325477831|gb|EGC80965.1| tyrosine recombinase XerD [Lactobacillus iners UPII 60-B]
 gi|328934612|gb|EGG31116.1| tyrosine recombinase XerD [Lactobacillus iners SPIN 1401G]
          Length = 296

 Score = 36.6 bits (83), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 44/214 (20%), Positives = 86/214 (40%), Gaps = 23/214 (10%)

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----W 186
           +S  + L+S+R  ++W  RQ  +  +P L ++ PK++       +  ++ +  +      
Sbjct: 67  ASISRMLSSLRKFYQWLFRQNLIKQDPLLRIDSPKKEKRLPTALSTTEVTKLINMPDTTT 126

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT----IITVELPDGFM 242
             G + R   E L  +G+R S+        +   +  IK    G+    I    +   ++
Sbjct: 127 DLGIRDRAILETLYATGMRVSEVINLNEDSIHEELHLIKVFGKGSKQRLIPISNVAMSWI 186

Query: 243 KLLAMTPIGK---------ETFFINNDKQKMNATQFSIW--FKAKATKAGVNKSA--HGV 289
           K   +T   K         +  F+N+   K+  T+ ++W   K     AG+NK+   H +
Sbjct: 187 KKYQITVRNKTLLESGKFEKAIFLNSRGGKI--TRQAVWQMIKRYCQLAGINKNVTPHTL 244

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           R   AT   + GA    +    G   +   + YT
Sbjct: 245 RHTFATHLLENGADLRIVQEILGHSDISTTQIYT 278


>gi|189423412|ref|YP_001950589.1| tyrosine recombinase XerC [Geobacter lovleyi SZ]
 gi|254799343|sp|B3E1H7|XERC_GEOLS RecName: Full=Tyrosine recombinase xerC
 gi|189419671|gb|ACD94069.1| tyrosine recombinase XerC [Geobacter lovleyi SZ]
          Length = 317

 Score = 36.2 bits (82), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 50/212 (23%), Positives = 77/212 (36%), Gaps = 21/212 (9%)

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG----SQP 192
           L ++R  F W VR   + +NP   +  PKR+     P+     Q      + G     QP
Sbjct: 86  LAAVRAFFGWLVRTRQLEVNPAELIATPKREQR--LPFHLNIDQTVTLIEAPGHTGQEQP 143

Query: 193 RLA-----FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-KTGTIITVELPDGFMKLLA 246
             A      E L  SGLR S+     V  L      ++ Q K G    V +    ++ L 
Sbjct: 144 TFARDTAILELLYSSGLRVSELTGLAVADLDRAAGMVRVQGKGGKERIVPVGSAALEALE 203

Query: 247 MTPIGK------ETFFINNDKQKMNATQFSIWFK--AKATKAGVNKSAHGVRKFSATISA 298
               G+         F+     ++N    +   K  A    A  + S H +R   AT   
Sbjct: 204 QYLAGRGQLADDAPLFLGCRGARINRRTVAQLVKRWASGIPAFRSISPHTLRHTFATHML 263

Query: 299 DAGATAHELMATYGWKTVDQAETYTK-GADRI 329
           + GA    +    G  ++   + YT  G DR+
Sbjct: 264 EGGADLRSIQELLGHSSLSTTQKYTHVGLDRL 295


>gi|326561998|gb|EGE12328.1| phage integrase [Moraxella catarrhalis 103P14B1]
 gi|326574492|gb|EGE24434.1| phage integrase [Moraxella catarrhalis 101P30B1]
 gi|326575920|gb|EGE25843.1| phage integrase [Moraxella catarrhalis CO72]
          Length = 397

 Score = 36.2 bits (82), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 67/245 (27%), Positives = 101/245 (41%), Gaps = 42/245 (17%)

Query: 19  GKIIYYFR---KGHGRRIRL-PYPHEST------FIPAYMSALTGSTPKRE-------YI 61
           GKI++  R    G  +R  L  YP  S        + A    L G  PK E       YI
Sbjct: 35  GKIVFQLRYRFNGKLKRFDLGVYPLISLKQAREKSLSAKTQLLHGKDPKLEEQIAKQAYI 94

Query: 62  NSPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTK-HI 119
           N+       L+W    Y KSA      A + + SFE Y   +I   G      IT + +I
Sbjct: 95  NADTFYECFLQW----YDKSAVITKKQASDIKRSFELYVFPVI---GSLPINDITLQQYI 147

Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE-------RPKRKTEGIR 172
                  + TP  A + LT+ + + KWA ++E V  N    +E       R KRK    R
Sbjct: 148 IIIESISEKTPGIAERILTNTKQMLKWAKKREIVTHNILADLELSDFNLVRVKRK----R 203

Query: 173 PWTKEDMQQF-KSFWSE--GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI--KTQ 227
             + +++  F K+ +      + RLA E  L  G R  +  RA +   Q+ ++++  +  
Sbjct: 204 YLSDDEIILFYKALYGSKISYRNRLATELALMFGCRGIELRRAKITDFQDGVWTVPPENH 263

Query: 228 KTGTI 232
           K G I
Sbjct: 264 KVGHI 268


>gi|315653500|ref|ZP_07906421.1| integrase/recombinase XerD [Lactobacillus iners ATCC 55195]
 gi|315489191|gb|EFU78832.1| integrase/recombinase XerD [Lactobacillus iners ATCC 55195]
          Length = 297

 Score = 36.2 bits (82), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 44/214 (20%), Positives = 86/214 (40%), Gaps = 23/214 (10%)

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----W 186
           +S  + L+S+R  ++W  RQ  +  +P L ++ PK++       +  ++ +  +      
Sbjct: 68  ASISRMLSSLRKFYQWLFRQNLIKQDPLLRIDSPKKEKRLPTALSTTEVTKLINMPDTTT 127

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT----IITVELPDGFM 242
             G + R   E L  +G+R S+        +   +  IK    G+    I    +   ++
Sbjct: 128 DLGIRDRAILETLYATGMRVSEVINLNEDSIHEELHLIKVFGKGSKQRLIPISNVAMSWI 187

Query: 243 KLLAMTPIGK---------ETFFINNDKQKMNATQFSIW--FKAKATKAGVNKSA--HGV 289
           K   +T   K         +  F+N+   K+  T+ ++W   K     AG+NK+   H +
Sbjct: 188 KKYQITVRNKTLLESGKFEKAIFLNSRGGKI--TRQAVWQMIKRYCQLAGINKNVTPHTL 245

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           R   AT   + GA    +    G   +   + YT
Sbjct: 246 RHTFATHLLENGADLRIVQEILGHSDISTTQIYT 279


>gi|241667835|ref|ZP_04755413.1| site-specific recombinase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254876378|ref|ZP_05249088.1| site-specific recombinase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254842399|gb|EET20813.1| site-specific recombinase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 292

 Score = 36.2 bits (82), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 53/249 (21%), Positives = 97/249 (38%), Gaps = 27/249 (10%)

Query: 95  FESYFDQIIRKSGDFD--YRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEY 152
            +SYF Q+   + DF+  Y  I+ +  ++G  SR     S  + ++++R  + W +    
Sbjct: 33  LQSYFSQVELINLDFEQLYAFISYRS-KNGYSSR-----SNARMISTLRKFYNWLISTGQ 86

Query: 153 VAINPCLSVERPKRKTEGIRPWTKEDMQ---QFKSFWSE-GSQPRLAFEFLLYSGLRCSD 208
              NP   +  PK      +  T+ D++   Q      + G + +   E +  +GLR S+
Sbjct: 87  ATTNPTTKLTLPKLAKRLPKDMTEVDVERLLQAPDLTDDIGIRDKAMLELMYATGLRVSE 146

Query: 209 SCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET------------FF 256
                   +  N+  I+    G+   + +P G   L  +    +E+             F
Sbjct: 147 LVGLNTNDIDLNVGVIQVMGKGSKERI-VPIGEYALEYLHKYFEESRESLAKNFKEKAVF 205

Query: 257 INNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWK 314
           I+   +++    F    K+ A  AG+N   S H +R   AT   + GA    +    G  
Sbjct: 206 ISKHSKRITRQSFWHRIKSYALIAGINTDISPHTLRHAFATHLLNHGADLRSVQLLLGHS 265

Query: 315 TVDQAETYT 323
            V     YT
Sbjct: 266 NVSTTTIYT 274


>gi|91791328|ref|YP_552278.1| phage integrase [Polaromonas sp. JS666]
 gi|91701209|gb|ABE47380.1| phage integrase [Polaromonas sp. JS666]
          Length = 557

 Score = 36.2 bits (82), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 26/108 (24%), Positives = 43/108 (39%), Gaps = 24/108 (22%)

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF------ 185
           SA   L+ +  +F+W + Q YV  NP   +     K  G++P   +  + F         
Sbjct: 304 SAAHGLSVLSAMFRWLIEQRYVLANPFSGI-----KVRGVQPAGMDTSRSFSDAEWALLR 358

Query: 186 -------WSEGSQP------RLAFEFLLYSGLRCSDSCRAGVQHLQNN 220
                  WS G QP      R   +F   +GLR S+   A +  ++ +
Sbjct: 359 TVADGLEWSYGWQPAAAQRLRFVLDFAYATGLRASELVHATLGAIEVD 406


>gi|302191354|ref|ZP_07267608.1| tyrosine recombinase XerD [Lactobacillus iners AB-1]
 gi|312871387|ref|ZP_07731482.1| tyrosine recombinase XerD [Lactobacillus iners LEAF 3008A-a]
 gi|311093040|gb|EFQ51389.1| tyrosine recombinase XerD [Lactobacillus iners LEAF 3008A-a]
          Length = 296

 Score = 36.2 bits (82), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 44/214 (20%), Positives = 86/214 (40%), Gaps = 23/214 (10%)

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----W 186
           +S  + L+S+R  ++W  RQ  +  +P L ++ PK++       +  ++ +  +      
Sbjct: 67  ASISRMLSSLRKFYQWLFRQNLIKQDPLLRIDSPKKEKRLPTAMSTTEVTKLINMPDTTT 126

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT----IITVELPDGFM 242
             G + R   E L  +G+R S+        +   +  IK    G+    I    +   ++
Sbjct: 127 DLGIRDRAILETLYATGMRVSEVINLNEDSIHEELHLIKVFGKGSKQRLIPISNVAMSWI 186

Query: 243 KLLAMTPIGK---------ETFFINNDKQKMNATQFSIW--FKAKATKAGVNKSA--HGV 289
           K   +T   K         +  F+N+   K+  T+ ++W   K     AG+NK+   H +
Sbjct: 187 KKYQITVRNKTLLESGKFEKAIFLNSRGGKI--TRQAVWQMIKRYCQLAGINKNVTPHTL 244

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           R   AT   + GA    +    G   +   + YT
Sbjct: 245 RHTFATHLLENGADLRIVQEILGHSDISTTQIYT 278


>gi|253566956|ref|ZP_04844408.1| integrase [Bacteroides sp. 3_2_5]
 gi|251944519|gb|EES85008.1| integrase [Bacteroides sp. 3_2_5]
          Length = 392

 Score = 36.2 bits (82), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 43/183 (23%), Positives = 71/183 (38%), Gaps = 14/183 (7%)

Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRC 206
           A R   +  NPC  +ER +         + E++ +      E    + AF F   +GLR 
Sbjct: 195 AHRDRKIKENPCPYLERVQTIPSDKVGLSAEELARVAETPCEIPVLKTAFLFSCLTGLRK 254

Query: 207 SDSCRAGVQHLQNNI-----FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK 261
           SD      + +Q         + + QKT  II   + +  ++L+  +   +E       K
Sbjct: 255 SDVKTFSWEMIQPEADGTLYITTRMQKTKQIIYNPIGEEALQLIDGS---REGLVFPGFK 311

Query: 262 QKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
             M    F  W KA    AG+ K  + HG R    ++  DAG  +  +    G K +   
Sbjct: 312 DSMTQAPFKKWIKA----AGITKKLTFHGARHTFCSLQLDAGTDSRTVQELVGHKNLATT 367

Query: 320 ETY 322
           + Y
Sbjct: 368 QRY 370


>gi|194016964|ref|ZP_03055577.1| tyrosine recombinase XerD [Bacillus pumilus ATCC 7061]
 gi|194011570|gb|EDW21139.1| tyrosine recombinase XerD [Bacillus pumilus ATCC 7061]
          Length = 296

 Score = 36.2 bits (82), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 48/263 (18%), Positives = 111/263 (42%), Gaps = 28/263 (10%)

Query: 87  LAVNSRISF----ESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFLTS 139
           L+ N+ +S+    ++Y   ++      D + +T  HI   ++  K    +  ++++ L+S
Sbjct: 18  LSENTIVSYKRDLQNYLSFLMTHEQLTDIKDVTRLHIIHYLKKLKEEGKSSKTSVRHLSS 77

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLA 195
           +R   ++ +R++    +P  ++E  K + +  +  +  ++++     ++ +    + +  
Sbjct: 78  IRSFHQFLLREKVTTDDPSWNIETQKTERKLPKVLSLGEVEKLLDTPNQHTPFDYRDKAM 137

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-------------QKTGTIITVELPDGFM 242
            E L  +G+R S+     +  +   +  I+              +   + I   L  G  
Sbjct: 138 LELLYATGIRVSEMLDLTLADVHLTMGFIRCFGKGRKERIVPIGEAAASAIEEYLEKGRS 197

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
           KLL   P   +  F+N+  +KM+   F    K +A +AG+ K  + H +R   AT   + 
Sbjct: 198 KLLKKQP--ADALFLNHHGKKMSRQGFWKNLKKRALEAGIQKELTPHTLRHSFATHLLEN 255

Query: 301 GATAHELMATYGWKTVDQAETYT 323
           GA    +    G   +   + YT
Sbjct: 256 GADLRAVQEMLGHADISTTQIYT 278


>gi|71280796|ref|YP_269073.1| phage integrase family site specific recombinase [Colwellia
           psychrerythraea 34H]
 gi|71146536|gb|AAZ27009.1| site-specific recombinase, phage integrase family [Colwellia
           psychrerythraea 34H]
          Length = 334

 Score = 36.2 bits (82), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 21/92 (22%), Positives = 46/92 (50%), Gaps = 2/92 (2%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPS 131
           L  ++  SA +   A  ++  +  Y   ++   G  D  K+  KH+R  ++ +  K   S
Sbjct: 65  LFEKFFLSASFIDKAPRTQKDYLGYKKDLLIAFGKMDINKVEPKHVRMFMDKKAVKSGIS 124

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163
            A +  ++++ +F WA  +  + +NPC+ V++
Sbjct: 125 QANRHKSALQSIFSWAYERGKIKVNPCVGVKK 156


>gi|41057046|ref|NP_957649.1| putative site-specific recombinase/integrase [Bacillus
           methanolicus]
 gi|40074231|gb|AAR39395.1| putative site-specific recombinase/integrase [Bacillus methanolicus
           MGA3]
          Length = 284

 Score = 36.2 bits (82), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 35/158 (22%), Positives = 69/158 (43%), Gaps = 11/158 (6%)

Query: 177 EDMQQFKSF-WSEGSQPRLAFEFLL-YSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTI 232
           +D+++F+      G++   A   LL Y+GLR S++    +Q  +L +   ++++ K    
Sbjct: 113 KDVEKFRQLVLDSGNKRNYALVTLLAYAGLRISEALNLKMQDFNLVSREITVRSGKGDKF 172

Query: 233 ITVELPD-------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS 285
             V + D        ++K      I  +  F++N  Q +N T  +  FK  +   G + +
Sbjct: 173 RVVFMNDKVKAALQSWLKERKEKGIEHDFLFVSNRNQPLNRTTINKLFKEYSEPIGKDIT 232

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
            H +R F  + +   G + HE+    G   +     YT
Sbjct: 233 PHDLRHFFCSHAISRGLSVHEVANQAGHSNIHTTLLYT 270


>gi|296163014|ref|ZP_06845790.1| integrase family protein [Burkholderia sp. Ch1-1]
 gi|295886758|gb|EFG66600.1| integrase family protein [Burkholderia sp. Ch1-1]
          Length = 419

 Score = 36.2 bits (82), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 40/95 (42%), Gaps = 15/95 (15%)

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINP-------------CLSVERPKRKTEGIRPWT 175
           +P SA   L  +  +F+W V Q YV  NP              L   R   + E +   T
Sbjct: 156 SPRSAAYALNVLSAMFRWLVEQRYVLANPFAGVKVRSHAERVGLDASRGFSEGEWLLIRT 215

Query: 176 KEDMQQFKSFWSEGSQPRLAF--EFLLYSGLRCSD 208
             D  ++   WSE +  RL F  +F   +GLR S+
Sbjct: 216 LADGLEWSYGWSEAAAQRLRFLLDFGYATGLRASE 250


>gi|325662711|ref|ZP_08151308.1| hypothetical protein HMPREF0490_02048 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325471050|gb|EGC74277.1| hypothetical protein HMPREF0490_02048 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 351

 Score = 36.2 bits (82), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 25/100 (25%), Positives = 46/100 (46%), Gaps = 4/100 (4%)

Query: 113 KITTKHIRS---GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER-PKRKT 168
           +I T  IR+    +  + + P+        +  LF +AVR   +  NPC       K K 
Sbjct: 98  EIQTSDIRAWQNELIKKGYAPTYLKSINNQLAALFNYAVRYYDLRDNPCRKAGSIGKSKA 157

Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD 208
           + +  WTK++ ++F        + R+AF  L ++G+R  +
Sbjct: 158 DEMDFWTKQEFKEFLPSMDSKPEARMAFLLLYWTGMRIGE 197


>gi|296126655|ref|YP_003633907.1| tyrosine recombinase XerD [Brachyspira murdochii DSM 12563]
 gi|296018471|gb|ADG71708.1| tyrosine recombinase XerD [Brachyspira murdochii DSM 12563]
          Length = 310

 Score = 36.2 bits (82), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 47/201 (23%), Positives = 82/201 (40%), Gaps = 23/201 (11%)

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLAFEF 198
           L+K+ V + Y++ NP  ++E  + K       T  ++    S  +E    G + +  FE 
Sbjct: 86  LYKFLVMENYISKNPTDNLEVIRLKRVLPESLTTTEVDDLLSVHNEKTDKGLRDKAIFEL 145

Query: 199 LLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKLL--------AMT 248
           +  SGLR S+ C   +  +  +     I+ +     I V + D  + +L         + 
Sbjct: 146 MYSSGLRVSEICSLRIDDIFFEGKYLKIRGKGNKERI-VPINDRALDILQRYIQTSRVIM 204

Query: 249 PIGKET--FFINNDKQKMNATQFSIWFKAKAT--KAGVNKSA--HGVRKFSATISADAGA 302
             GK+T   F+N    K+  ++  IW   K T  K+ + K+   H +R   AT     GA
Sbjct: 205 VKGKKTSELFLNFRGDKI--SRVGIWKIVKETMKKSNITKNVYPHTLRHSFATHLIQHGA 262

Query: 303 TAHELMATYGWKTVDQAETYT 323
               +    G   +   E YT
Sbjct: 263 DLRAVQRMLGHSDITTTEIYT 283


>gi|293376592|ref|ZP_06622820.1| tyrosine recombinase XerD [Turicibacter sanguinis PC909]
 gi|292644818|gb|EFF62900.1| tyrosine recombinase XerD [Turicibacter sanguinis PC909]
          Length = 305

 Score = 36.2 bits (82), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 49/259 (18%), Positives = 107/259 (41%), Gaps = 22/259 (8%)

Query: 87  LAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRS---GVESRKHTPSSAIQFLTSM 140
           L++N++IS+E    + +   +        +I  +H++     +  R     S  + L+++
Sbjct: 22  LSLNTKISYERDLTEYLLYLQNQSVHQLDEIRREHVQQYLITLYERNLNTKSVARHLSAI 81

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAF 196
           R   ++ + ++    NPC  +E PK K       + ++++   S ++  +    + +   
Sbjct: 82  RSFHQYLMIEKISNTNPCELIESPKLKRHLPEILSIDEVEHLLSSFNTKTVNDIRNKAMV 141

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---IITV-ELPDGFMKLLAMTPIGK 252
           E +  SGLR S+  +  +  +  ++  ++    G    I+ + E+    ++L   T   K
Sbjct: 142 ELMYASGLRVSELLQLKLDDVHLSMMFVRCVGKGDKERIVPIGEVATELLQLYLDTARPK 201

Query: 253 ------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATA 304
                 +  F+N   + M    F    K +A +AG+ K  S H +R   AT   + G   
Sbjct: 202 LLKKSNDWLFLNRFGEVMTRQGFWKILKKQAKEAGIEKEISPHKLRHSFATHLIENGVDL 261

Query: 305 HELMATYGWKTVDQAETYT 323
             +    G   +   + YT
Sbjct: 262 RLVQEMLGHSDISTTQIYT 280


>gi|163783966|ref|ZP_02178933.1| recombinase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880762|gb|EDP74299.1| recombinase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 291

 Score = 36.2 bits (82), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 55/256 (21%), Positives = 107/256 (41%), Gaps = 33/256 (12%)

Query: 82  AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI---RSGVESRKHTPSSAIQFLT 138
           A+    + N+  ++     Q  + +GD D   IT   I   R  ++S++   S+  + L 
Sbjct: 12  AYLADKSPNTVKNYNVDLKQFAQIAGDKDVESITKADIAKFRMVLQSKRLKSSTIARKLA 71

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEF 198
            +   F++ +  E ++ +P     RPK   +     T E++++     ++    +L  + 
Sbjct: 72  CLNSFFQYLIDLELISSSPITKSHRPKVSNKIPSSLTHEEIKRVIE-NADNIMDKLIIKI 130

Query: 199 LLYSGLRCS---DSCRAGVQHLQN----NIFSIKTQKTGTIITVELPDGFMKLLA----- 246
           LL +GLR +   D  R  +   +N    NI  I+  + G I        ++K+L      
Sbjct: 131 LLTTGLRSAEILDIRRENIIIERNGQLFNIDYIENLQEGDI-------AYIKVLGKGNKE 183

Query: 247 -MTPIGK---ETFFINNDKQKMN----ATQFSIWFKAK--ATKAGVNKSAHGVRKFSATI 296
            + P+ +   E  F    K K++     +  S+W +      KAGV    H +R  +AT+
Sbjct: 184 RIVPLSENVLEELFNYLKKYKVSPIFPISYHSLWRRIINIGKKAGVILHPHKLRHTAATL 243

Query: 297 SADAGATAHELMATYG 312
           +  +GA    +    G
Sbjct: 244 ALQSGAELRVIQELLG 259


>gi|320668198|gb|EFX35057.1| Site-specific recombinase, phage integrase family protein
           [Escherichia coli O157:H7 str. LSU-61]
          Length = 203

 Score = 36.2 bits (82), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 30/134 (22%), Positives = 57/134 (42%), Gaps = 1/134 (0%)

Query: 36  PYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISF 95
           P   ES  + A    L     K E   + R +  T   L  ++  SA++  L+  ++  +
Sbjct: 28  PTSRESVTLTAIEDGLAALWKKYEETVNHRDRAMTFGRLWEKFLASAYYSELSPRTQKDY 87

Query: 96  ESYFDQIIRKSGDFDYRKITTKHIRSGVESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVA 154
             +  +++   G      +  +HIR  ++ R + + + A    +SM  ++ W   + YV 
Sbjct: 88  LQHQKKLLAVFGKVLADSVKPEHIRRYMDKRGEQSKTQANHEKSSMSRVYSWGYERGYVK 147

Query: 155 INPCLSVERPKRKT 168
            NPC  V + K K 
Sbjct: 148 ANPCAGVSKFKAKN 161


>gi|259500665|ref|ZP_05743567.1| integrase/recombinase XerD [Lactobacillus iners DSM 13335]
 gi|259168049|gb|EEW52544.1| integrase/recombinase XerD [Lactobacillus iners DSM 13335]
          Length = 297

 Score = 36.2 bits (82), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 44/214 (20%), Positives = 86/214 (40%), Gaps = 23/214 (10%)

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----W 186
           +S  + L+S+R  ++W  RQ  +  +P L ++ PK++       +  ++ +  +      
Sbjct: 68  ASISRMLSSLRKFYQWLFRQNLIKQDPLLRIDSPKKEKRLPTAMSTTEVTKLINMPDTTT 127

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT----IITVELPDGFM 242
             G + R   E L  +G+R S+        +   +  IK    G+    I    +   ++
Sbjct: 128 DLGIRDRAILETLYATGMRVSEVINLNEDSIHEELHLIKVFGKGSKQRLIPISNVAMSWI 187

Query: 243 KLLAMTPIGK---------ETFFINNDKQKMNATQFSIW--FKAKATKAGVNKSA--HGV 289
           K   +T   K         +  F+N+   K+  T+ ++W   K     AG+NK+   H +
Sbjct: 188 KKYQITVRNKTLLESGKFEKAIFLNSRGGKI--TRQAVWQMIKRYCQLAGINKNVTPHTL 245

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           R   AT   + GA    +    G   +   + YT
Sbjct: 246 RHTFATHLLENGADLRIVQEILGHSDISTTQIYT 279


>gi|325522051|gb|EGD00723.1| phage integrase family protein [Burkholderia sp. TJI49]
          Length = 311

 Score = 36.2 bits (82), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 61/154 (39%), Gaps = 24/154 (15%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT----PSSAIQFLTSMR 141
           SL  +  I++ S+  +   +      R +     R  VE R  T      SA   L  + 
Sbjct: 6   SLTTDDAIAYRSFLRRPTPRE-----RWVGPSRPRQSVEWRPFTGPLSARSAAYALNVLS 60

Query: 142 VLFKWAVRQEYVAINP-------------CLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
            LF+W V Q YV  NP              L V R   + E +   T  D  ++   WSE
Sbjct: 61  ALFRWLVEQRYVLANPFAGVKIKSQVQRAGLDVSRGFSEGEWLLIRTLADGLEWSYGWSE 120

Query: 189 GSQPRLAF--EFLLYSGLRCSDSCRAGVQHLQNN 220
            +  RL F  +F   +GLR S+   A +  ++ +
Sbjct: 121 AAAQRLRFLLDFGYATGLRASELVGATLGDIRRD 154


>gi|298386165|ref|ZP_06995722.1| tyrosine recombinase XerC [Bacteroides sp. 1_1_14]
 gi|298261393|gb|EFI04260.1| tyrosine recombinase XerC [Bacteroides sp. 1_1_14]
          Length = 293

 Score = 36.2 bits (82), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 29/110 (26%), Positives = 53/110 (48%), Gaps = 8/110 (7%)

Query: 107 GDFDYRKITTKHIRSGVES---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163
           G FD  ++  + IR  + S   R +T +S  + L+S+R  +K+ +RQ  V ++P   +  
Sbjct: 40  GKFDPLEVEGELIREWIVSLMDRGYTSTSVNRKLSSLRSFYKYLLRQGEVTVDPLRKITG 99

Query: 164 PKRKTEGIRPWTKEDMQQF--KSFWSE---GSQPRLAFEFLLYSGLRCSD 208
           PK K        + +M +    + + E   G + RL  E    +G+R S+
Sbjct: 100 PKNKKPLPVFLKENEMDKLLDDTDFGEGFKGCRDRLIIEMFYATGMRLSE 149


>gi|322384983|ref|ZP_08058635.1| phage integrase-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321150178|gb|EFX43689.1| phage integrase-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 404

 Score = 36.2 bits (82), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 38/163 (23%), Positives = 73/163 (44%), Gaps = 26/163 (15%)

Query: 107 GDFDYRKITTKHIRSGVES-RKHTPSSAIQFLTSMRV-LFKWAVRQEYVAINPCLSVERP 164
           G      +T  H++    S R+H  +  +Q + ++    F  AV+   ++ NP   V++P
Sbjct: 139 GSLRLTDLTPNHVQKFYNSLREHYGAGYVQNIGNLLSKAFTQAVKWNMISRNPIPLVKKP 198

Query: 165 K--RKTEGIRPWTKEDMQQFKSFWSEGSQPRL---AFEFLLYSGLRCSD----------- 208
              RK   ++ WT ED ++F  +  +G  P+L    F   L SG+R  +           
Sbjct: 199 SLSRKNTKMKTWTVEDQRKFLDYAKDG--PKLYYVIFLLALTSGMRKGELLGLIWDDVDT 256

Query: 209 -----SCRAGVQHLQNNIFSIKTQKTGTII-TVELPDGFMKLL 245
                S +  + + Q  ++     KT + I T++LP+  +K++
Sbjct: 257 KKGIVSIKRTIVYAQRKLYLKDMPKTESAIRTIQLPEPTIKVM 299


>gi|270012961|gb|EFA09409.1| hypothetical protein TcasGA2_TC005211 [Tribolium castaneum]
          Length = 573

 Score = 36.2 bits (82), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 54/125 (43%), Gaps = 14/125 (11%)

Query: 222 FSIKTQKTGTIITVELPDGFMKLL-AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280
           F I   K   +  +EL   +M++    TP  +  FFIN  K+K       I  K     A
Sbjct: 394 FIITAGKLENVNLLELVRRYMEIRPTKTPHNR--FFINYTKEKCTIQPVGI-HKIGGVPA 450

Query: 281 GVNK----------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
            V K          + H  R+ SA++ A+AGAT   +    GW++   AE Y +  +  +
Sbjct: 451 IVAKYLGLENASSYTGHCFRRSSASLLANAGATMERIKRHGGWRSTTVAEGYIEECENTK 510

Query: 331 LGIKN 335
           + + N
Sbjct: 511 IKVAN 515


>gi|303237551|ref|ZP_07324115.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
 gi|302482270|gb|EFL45301.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
          Length = 428

 Score = 36.2 bits (82), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 49/233 (21%), Positives = 89/233 (38%), Gaps = 29/233 (12%)

Query: 90  NSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVR 149
           N  ISF+ + ++ +    DF         +   +E R  T S    FL   +   +W+ +
Sbjct: 163 NPNISFDDFTEEAMNDYMDF---------LGHKLEMRNSTISKQFGFL---KWFLRWSKK 210

Query: 150 QEYVAINPCLSVERPKRKT--EGIRPWTKEDMQQFKSFWSEGSQPRL-----AFEFLLYS 202
           + +   N      +PK K   + I   T+++ +Q   +   GS+  L      F F  ++
Sbjct: 211 KGFHQ-NAAFETYKPKLKNPEKPIIFLTRKEQEQLHDYQIPGSKQYLERVRDVFSFCCFT 269

Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM---TPIGKETFFINN 259
           GLR SD        ++++   I T KT   + ++L      +L      P   +      
Sbjct: 270 GLRYSDVYNLRRSDIKDDHIEITTIKTTDYLKIDLNKHSRSILEKYKDIPFKNDKALPVI 329

Query: 260 DKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYG 312
             Q+MN      + K     AG++   H +  +      D     +ELM T+ 
Sbjct: 330 SNQRMNE-----YLKELCELAGIDSPVH-LTYYRGQQRIDETHPKYELMGTHA 376


>gi|256840355|ref|ZP_05545863.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256737627|gb|EEU50953.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 393

 Score = 36.2 bits (82), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 47/208 (22%), Positives = 82/208 (39%), Gaps = 30/208 (14%)

Query: 147 AVRQEYVAINPCLSVE---RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203
           AVR   +  NP L +E   +P+++       T E++++  +        + AF F  ++G
Sbjct: 184 AVRDGLIEQNPFLLLEAKEKPQKRVAEREFLTIEEIKKVMNTPCRYELVKKAFLFSCFTG 243

Query: 204 LRCSDSCRAG--------------VQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP 249
           LR SD                   + H+Q         KT   +T+ L +   K +    
Sbjct: 244 LRYSDMKALNWSEIHKAADGKTEYIDHIQ--------VKTKDRVTIPLSEETKKWMPKRE 295

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHEL 307
            G +  F N     + +T   +  K     AG+ K  + H  R  +AT+    GA+ + +
Sbjct: 296 EGIDNIFHN---LTITSTTVEVVLKEWMEAAGITKHITYHCSRHTAATMLLTLGASIYVV 352

Query: 308 MATYGWKTVDQAETYTKGADRIRLGIKN 335
               G K++   E Y K  D+ +L   N
Sbjct: 353 SKILGHKSIKMTEIYAKIVDKKKLETVN 380


>gi|74311311|ref|YP_309730.1| putative integrase fragment [Shigella sonnei Ss046]
 gi|73854788|gb|AAZ87495.1| putative integrase fragment [Shigella sonnei Ss046]
          Length = 270

 Score = 36.2 bits (82), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 31/145 (21%), Positives = 59/145 (40%), Gaps = 2/145 (1%)

Query: 93  ISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQ 150
           I++ S    I R   D     ITTK I + +     +   +SA    +++   F+ A+ +
Sbjct: 12  INYMSKIKAIRRGLPDAPLEDITTKEIAAMLNGYIDEGKAASAKLIRSTLSDAFREAIAE 71

Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210
            ++   P  +    K +    R    E ++ +++  S     RLA E  + +G R  D C
Sbjct: 72  GHITTKPVAATRAAKSEVRRSRLTADEYLKIYQTAESSPCWLRLAMELAVVTGQRVGDLC 131

Query: 211 RAGVQHLQNNIFSIKTQKTGTIITV 235
                 + +    ++  KTG  I +
Sbjct: 132 EMKWSDIVDGYLYVEQSKTGVKIAI 156


>gi|71042133|pdb|1Z1G|A Chain A, Crystal Structure Of A Lambda Integrase Tetramer Bound To
           A Holliday Junction
 gi|71042134|pdb|1Z1G|C Chain C, Crystal Structure Of A Lambda Integrase Tetramer Bound To
           A Holliday Junction
 gi|71042141|pdb|1Z1G|B Chain B, Crystal Structure Of A Lambda Integrase Tetramer Bound To
           A Holliday Junction
 gi|71042144|pdb|1Z1G|D Chain D, Crystal Structure Of A Lambda Integrase Tetramer Bound To
           A Holliday Junction
          Length = 356

 Score = 36.2 bits (82), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 58/292 (19%), Positives = 111/292 (38%), Gaps = 29/292 (9%)

Query: 25  FRKGHGRRIRLPYPHESTFIPAYMSALTGST--PKREYINSPRKKPTTLKWLISEYRKSA 82
           F  G  RRI +     +  I A +   +G    P    INS      TL   +  Y K  
Sbjct: 35  FGLGRDRRIAI-----TEAIQANIELFSGHKHKPLTARINS--DNSVTLHSWLDRYEKIL 87

Query: 83  HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSM 140
               +   + I++ S    I R   D     ITTK I + +     +   +SA    +++
Sbjct: 88  ASRGIKQKTLINYXSKIKAIRRGLPDAPLEDITTKEIAAXLNGYIDEGKAASAKLIRSTL 147

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200
              F+ A+ + ++  N   +    K +    R    E ++ +++  S     RLA E  +
Sbjct: 148 SDAFREAIAEGHITTNHVAATRAAKSEVRRSRLTADEYLKIYQAAESSPCWLRLAXELAV 207

Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF-MKLLAMTP---------- 249
            +G R  D C      + +    ++  KTG  + + +P    +  L ++           
Sbjct: 208 VTGQRVGDLCEXKWSDIVDGYLYVEQSKTG--VKIAIPTALHIDALGISXKETLDKCKEI 265

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA-----HGVRKFSATI 296
           +G ET   +  ++ +++   S +F      +G++        H +R  SA +
Sbjct: 266 LGGETIIASTRREPLSSGTVSRYFXRARKASGLSFEGDPPTFHELRSLSARL 317


>gi|212639574|ref|YP_002316094.1| site-specific tyrosine recombinase XerC [Anoxybacillus flavithermus
           WK1]
 gi|254799325|sp|B7GGC7|XERC_ANOFW RecName: Full=Tyrosine recombinase xerC
 gi|212561054|gb|ACJ34109.1| Site-specific recombinase XerD [Anoxybacillus flavithermus WK1]
          Length = 300

 Score = 36.2 bits (82), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 23/113 (20%), Positives = 53/113 (46%), Gaps = 4/113 (3%)

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           +  RK +  S  + ++S+R  +K+ +R++ V+ NP      PK++ +       ++++Q 
Sbjct: 63  LHQRKQSSRSIARKMSSLRSFYKFLLREKIVSENPFALASLPKKEQKIPHFLYPDELEQL 122

Query: 183 KSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
                   + G + +   E L  +G+R S+ C   + H+  ++ +I     G 
Sbjct: 123 FVVNDLNTAIGQRNQAMIELLYATGIRVSECCNIRLSHIDFSVCTILISGKGN 175


>gi|225013068|ref|ZP_03703483.1| integrase family protein [Flavobacteria bacterium MS024-2A]
 gi|225002796|gb|EEG40777.1| integrase family protein [Flavobacteria bacterium MS024-2A]
          Length = 289

 Score = 36.2 bits (82), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 46/213 (21%), Positives = 80/213 (37%), Gaps = 18/213 (8%)

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK--RKTEGIRPWTKEDM--QQFKS 184
           +P +  + L+ +R  F + + + Y   NP   +E PK  RK   +    + ++   Q   
Sbjct: 57  SPHTQARRLSGLRSFFDYLIFESYRTSNPTDLIEAPKLGRKLPDVLSTEEIELMINQINL 116

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI--------ITVE 236
              +G + R   E L  SG+R S+     + +L      I+    G          I+ E
Sbjct: 117 SHPQGQRNRAILEILYGSGIRVSELTNLSLSNLFFEEDMIRVHGKGNKQRLVPMGGISKE 176

Query: 237 LPDGFM----KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVR 290
             + ++    K   ++   K+  F+N     +         K  A KA V K    H  R
Sbjct: 177 FLEEYITETRKNQKISVKDKDIVFLNRRGNGLTRQMIFTLIKDLAIKANVKKQVGPHTFR 236

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYT 323
              AT   + GA    +    G +++   E YT
Sbjct: 237 HSFATHLLENGADLRTIQILMGHESITTTEIYT 269


>gi|210610936|ref|ZP_03288661.1| hypothetical protein CLONEX_00851 [Clostridium nexile DSM 1787]
 gi|210152236|gb|EEA83243.1| hypothetical protein CLONEX_00851 [Clostridium nexile DSM 1787]
          Length = 351

 Score = 36.2 bits (82), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 1/82 (1%)

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER-PKRKTEGIRPWTKEDMQQFKSFW 186
           + P+        +  LF +AVR   +  NPC       K K + +  WTK++ ++F    
Sbjct: 116 YAPTYLKSINNQLAALFNYAVRYYDLRDNPCRKAGSIGKSKADEMDFWTKQEFKEFLPSM 175

Query: 187 SEGSQPRLAFEFLLYSGLRCSD 208
               + R+AF  L ++G+R  +
Sbjct: 176 ENKPEARMAFLILYWTGMRIGE 197


>gi|326407821|gb|ADZ64892.1| integrase [Lactococcus lactis subsp. lactis CV56]
          Length = 378

 Score = 36.2 bits (82), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 30/122 (24%), Positives = 57/122 (46%), Gaps = 14/122 (11%)

Query: 99  FDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158
           F+  +++ G+ D ++I    I+S + + + +PS+      S  +LF +A    Y+  NP 
Sbjct: 96  FNTFLKRFGEMDIKEINPDQIQSFLFNSQLSPSTRSLRKNSFNLLFTYAKNVGYIEANPV 155

Query: 159 LSVERPKRKTEGIRPWTKE-----DMQQFKSFWSEGSQP-------RLAFEFLLYSGLRC 206
             V  PK K   I    K+     ++++ +    E ++P        L +EFL  +GLR 
Sbjct: 156 ERVVLPKEKN-TIEELKKKQNKFLNLEEMRIIL-EKNKPIEKDIRKLLIYEFLFLTGLRI 213

Query: 207 SD 208
            +
Sbjct: 214 GE 215


>gi|319649574|ref|ZP_08003730.1| tyrosine recombinase [Bacillus sp. 2_A_57_CT2]
 gi|317398736|gb|EFV79418.1| tyrosine recombinase [Bacillus sp. 2_A_57_CT2]
          Length = 300

 Score = 36.2 bits (82), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 31/131 (23%), Positives = 63/131 (48%), Gaps = 11/131 (8%)

Query: 110 DYRKITTKHIR---SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
           D  K+  + +R   + +  +K +  S  + ++S+R  FK+ +R+E VA NP   V  PK 
Sbjct: 48  DLTKVAYQDVRIYLTELYDKKMSRKSVARKISSLRSFFKFLLREEKVAENPFALVSIPKA 107

Query: 167 KTEGIRP---WTKEDMQQFKSFWSE---GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220
           + +   P   +  E MQ F +  +    G + +   E L  +G+R S+  +  ++ L   
Sbjct: 108 QKK--LPEFFYEAEMMQLFNACEASTPLGQRNKALLELLYATGIRVSECSQIRLKDLDMY 165

Query: 221 IFSIKTQKTGT 231
           + ++  +  G+
Sbjct: 166 LSTVLVRGKGS 176


>gi|186681250|ref|YP_001864446.1| phage integrase family protein [Nostoc punctiforme PCC 73102]
 gi|186463702|gb|ACC79503.1| phage integrase family protein [Nostoc punctiforme PCC 73102]
          Length = 400

 Score = 36.2 bits (82), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 25/117 (21%), Positives = 54/117 (46%), Gaps = 10/117 (8%)

Query: 112 RKITTKHIRSGVESRKH-----TPSSAIQFLTSMRVLFKWAVRQEYVAINP----CLSVE 162
           + + TK +   +  R H     +P++A + LT +    KWA+       NP       ++
Sbjct: 134 KGLPTKDLTQAIAIRDHLLTQLSPNAAKRVLTYLAACCKWAMGSGLAKDNPFAGMSEDIK 193

Query: 163 RPKRKTEGIRPWTKEDMQQ-FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218
            PK  ++ I P++K++M    ++F +  +      +FL ++G R  ++     +H+ 
Sbjct: 194 LPKHDSDAIDPFSKQEMNNIIQAFETTRAHYAPFVKFLFWTGCRTGEAIALQWKHIN 250


>gi|312872390|ref|ZP_07732460.1| tyrosine recombinase XerD [Lactobacillus iners LEAF 2062A-h1]
 gi|312873969|ref|ZP_07734005.1| tyrosine recombinase XerD [Lactobacillus iners LEAF 2052A-d]
 gi|312875440|ref|ZP_07735443.1| tyrosine recombinase XerD [Lactobacillus iners LEAF 2053A-b]
 gi|311088951|gb|EFQ47392.1| tyrosine recombinase XerD [Lactobacillus iners LEAF 2053A-b]
 gi|311090518|gb|EFQ48926.1| tyrosine recombinase XerD [Lactobacillus iners LEAF 2052A-d]
 gi|311092213|gb|EFQ50587.1| tyrosine recombinase XerD [Lactobacillus iners LEAF 2062A-h1]
          Length = 296

 Score = 36.2 bits (82), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 49/223 (21%), Positives = 88/223 (39%), Gaps = 41/223 (18%)

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK---------TEGIR----PWTKE 177
           +S  + L+S+R  ++W  RQ  +  +P L ++ PK++         TE  +    P T  
Sbjct: 67  ASISRMLSSLRKFYQWLFRQNLIKQDPLLRIDSPKKEKRLPIALSTTEVTKLINMPDTTT 126

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT----II 233
           D+         G + R   E L  +G+R S+        +   +  IK    G+    I 
Sbjct: 127 DL---------GIRDRAILETLYATGMRVSEVINLNEDSIHEELHLIKVFGKGSKQRLIP 177

Query: 234 TVELPDGFMKLLAMTPIGK---------ETFFINNDKQKMNATQFSIW--FKAKATKAGV 282
              +   ++K   +T   K         +  F+N+   K+  T+ ++W   K     AG+
Sbjct: 178 ISNVAMSWIKKYQITVRNKTLLESGKFEKAIFLNSRGGKI--TRQAVWQMIKRYCQLAGI 235

Query: 283 NKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           NK+   H +R   AT   + GA    +    G   +   + YT
Sbjct: 236 NKNVTPHTLRHTFATHLLENGADLRIVQEILGHSDISTTQIYT 278


>gi|307149687|ref|YP_003890995.1| integrase family protein [Cyanothece sp. PCC 7822]
 gi|306986753|gb|ADN18630.1| integrase family protein [Cyanothece sp. PCC 7822]
          Length = 286

 Score = 36.2 bits (82), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 40/188 (21%), Positives = 70/188 (37%), Gaps = 9/188 (4%)

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
           ++ P+S  + L +++ LF +A + E ++ NP  +V  PK K         ED  +   + 
Sbjct: 63  RYAPTSRKRKLAAIKSLFSFAHKNELISTNPGAAVPSPKTKDAISERILTEDEWERMLYA 122

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--------NIFSIKTQKTGTIITVELP 238
               Q +L    L  +  R S+ C    + ++          +F    +     IT +L 
Sbjct: 123 EPNRQHQLMLTLLYETRARVSEFCALKWKDIREKPDGAALVTLFGKGNKTRKVTITPQLW 182

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATIS 297
                  A    G    F+N   +  +  Q     KA   + G+   S H +R   AT  
Sbjct: 183 QVLKATKAADAKGDSPLFLNYRHKAYSTVQVWRIVKAAGERVGIYGVSPHWIRHTGATHQ 242

Query: 298 ADAGATAH 305
              G+  H
Sbjct: 243 LINGSPLH 250


>gi|253774276|ref|YP_003037107.1| lambda integrase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253325320|gb|ACT29922.1| lambda integrase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|313848583|emb|CAQ31222.2| enterobacteria phage lambda, integration protein [Escherichia coli
           BL21(DE3)]
          Length = 307

 Score = 36.2 bits (82), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 47/215 (21%), Positives = 82/215 (38%), Gaps = 11/215 (5%)

Query: 25  FRKGHGRRIRLPYPHESTFIPAYMSALTGST--PKREYINSPRKKPTTLKWLISEYRKSA 82
           F  G  RRI +     +  I A +   +G    P    INS      TL   +  Y K  
Sbjct: 35  FGLGRDRRIAI-----TEAIQANIELFSGHKHKPLTARINS--DNSVTLHSWLDRYEKIL 87

Query: 83  HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSM 140
               +   + I++ S    I R   D     ITTK I + +     +   +SA    +++
Sbjct: 88  ASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAMLNGYIDEGKAASAKLIRSTL 147

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200
              F+ A+ + ++  N   +    K +    R    E ++ +++  S     RLA E  +
Sbjct: 148 SDAFREAIAEGHITTNHVAATRAAKSEVRRSRLTADEYLKIYQAAESSPCWLRLAMELAV 207

Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
            +G R  D C      + +    ++  KTG  I +
Sbjct: 208 VTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAI 242


>gi|294625249|ref|ZP_06703889.1| site-specific recombinase, phage integrase family [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 11122]
 gi|292600477|gb|EFF44574.1| site-specific recombinase, phage integrase family [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 11122]
          Length = 360

 Score = 36.2 bits (82), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 41/181 (22%), Positives = 70/181 (38%), Gaps = 13/181 (7%)

Query: 156 NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF--EFLLYSGLRCSD--SCR 211
           +P L + RP       R  T  + Q+        S P L +     L +G+R S+    R
Sbjct: 159 SPVLGIRRPPPGPGRDRRLTPHEEQRLLRAVDGHSNPMLGWIVRLALETGMRASELVGLR 218

Query: 212 AGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT------PIGKETFFINNDKQ--K 263
                L   +  ++  K G+  TV L    +++L +       PI  +  F     +  K
Sbjct: 219 RSQVDLVRRVARLQQTKNGSSRTVPLTQEAVQVLRVALANPVRPIDTDLLFYGEPGRDGK 278

Query: 264 MNATQFS-IWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
             + QF+  W K K      +   H +R  + +   +AG +  E+ A  G K++     Y
Sbjct: 279 RRSYQFNPAWMKLKCDAGMADLHFHDLRHEAISRLVEAGLSDQEVAAISGHKSMQMLRRY 338

Query: 323 T 323
           T
Sbjct: 339 T 339


>gi|170757708|ref|YP_001782133.1| phage integrase [Clostridium botulinum B1 str. Okra]
 gi|169122920|gb|ACA46756.1| phage integrase [Clostridium botulinum B1 str. Okra]
          Length = 331

 Score = 36.2 bits (82), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 24/97 (24%), Positives = 43/97 (44%), Gaps = 3/97 (3%)

Query: 114 ITTKHIRS--GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
           I T  +R   G   +   PSS    ++ ++  F W   +EY+  NP   +++ K      
Sbjct: 97  INTMDLRMFLGARCKNMKPSSMNGQISILKSFFGWLEAEEYIPKNPAAKLKQTKEPKRVR 156

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD 208
           +P T+E+ +  +       Q  L  EFL+ +G R  +
Sbjct: 157 KPLTEEEAELLRQACETDRQKALT-EFLISTGCRLDE 192


>gi|326692503|ref|ZP_08229508.1| tyrosine recombinase XerD [Leuconostoc argentinum KCTC 3773]
          Length = 298

 Score = 35.8 bits (81), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 49/235 (20%), Positives = 95/235 (40%), Gaps = 26/235 (11%)

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           +S I+ +TS+R  F +  +++ V  NP   ++ PK+ T      +  ++    +  ++ +
Sbjct: 71  NSVIRMVTSLRKFFGYLAQEKIVLPNPMRDIQPPKKATHLPAVLSVAEIDALLAVPTDTT 130

Query: 191 ----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---IITV--ELPDGF 241
               + R   E +  +GLR S+     +  L   +  I+T   G    II +     D  
Sbjct: 131 PLDIRNRTLIEVMYATGLRVSELVNLKLSDLHLQLGLIQTIGKGDKERIIPIGEVAADWL 190

Query: 242 MKLLAMTPI----GKETFFINNDKQKMNATQFSIW--FKAKATKAGVNK--SAHGVRKFS 293
            +  A + +    GK + ++  + +    T+  +W   K    +AG+ K  S H +R   
Sbjct: 191 TRYFASSRLALLKGKASPYVFLNDRGGQLTRQGVWKIIKKLVVEAGITKDVSPHTLRHSF 250

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
           AT   + GA    +    G   +   + YT           + +R+S V D   P
Sbjct: 251 ATHILENGADLRIVQELLGHADISTTQIYTH---------ISKKRLSEVYDQYHP 296


>gi|167464469|ref|ZP_02329558.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family protein [Paenibacillus larvae subsp. larvae
           BRL-230010]
          Length = 379

 Score = 35.8 bits (81), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 38/163 (23%), Positives = 73/163 (44%), Gaps = 26/163 (15%)

Query: 107 GDFDYRKITTKHIRSGVES-RKHTPSSAIQFLTSMRV-LFKWAVRQEYVAINPCLSVERP 164
           G      +T  H++    S R+H  +  +Q + ++    F  AV+   ++ NP   V++P
Sbjct: 114 GSLRLTDLTPNHVQKFYNSLREHYGAGYVQNIGNLLSKAFTQAVKWNMISRNPIPLVKKP 173

Query: 165 K--RKTEGIRPWTKEDMQQFKSFWSEGSQPRL---AFEFLLYSGLRCSD----------- 208
              RK   ++ WT ED ++F  +  +G  P+L    F   L SG+R  +           
Sbjct: 174 SLSRKNTKMKTWTVEDQRKFLDYAKDG--PKLYYVIFLLALTSGMRKGELLGLIWDDVDT 231

Query: 209 -----SCRAGVQHLQNNIFSIKTQKTGTII-TVELPDGFMKLL 245
                S +  + + Q  ++     KT + I T++LP+  +K++
Sbjct: 232 KKGIVSIKRTIVYAQRKLYLKDMPKTESAIRTIQLPEPTIKVM 274


>gi|323186667|gb|EFZ71993.1| phage integrase family protein [Escherichia coli RN587/1]
          Length = 300

 Score = 35.8 bits (81), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 36/159 (22%), Positives = 66/159 (41%), Gaps = 6/159 (3%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-KHTPSS 132
           L  ++  SA++  L+  ++  +  +  +++   G      I   HIR  ++ R + + + 
Sbjct: 6   LWEKFLASAYYSDLSPRTQKDYLQHQKKLLAVFGKVPADSIKPVHIRRYMDKRGEQSKTQ 65

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
           A    +SM  ++ W   + YV  NPC  V + K K        KE    +++  S    P
Sbjct: 66  ANHEKSSMSRVYSWGYERGYVKGNPCAGVSKFKAKNRERYVTDKE----YQAVLSVAPLP 121

Query: 193 R-LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
             +A E       R SD      + + N+   I+  KTG
Sbjct: 122 VFIAMEIAYLCAARVSDVLSLKWEQIGNDGIFIQQGKTG 160


>gi|318605376|emb|CBY26874.1| hypothetical protein Y11_13071 [Yersinia enterocolitica subsp.
           palearctica Y11]
          Length = 332

 Score = 35.8 bits (81), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 30/133 (22%), Positives = 62/133 (46%), Gaps = 4/133 (3%)

Query: 39  HESTFIP--AYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFE 96
           H ++ IP   +   LT      ++IN  + K +TL  L+  + +S  +  LA  ++  + 
Sbjct: 24  HHNSPIPWSTFAQYLTVWVHYEKFINEKKDK-STLNTLVESFFRSVDFIDLATETQKDYR 82

Query: 97  SYFDQIIRKSGDFDYRKITTKHIRSGVESRK-HTPSSAIQFLTSMRVLFKWAVRQEYVAI 155
            Y  +++   G      I  +H+R  ++ R   + + A +  T M   ++W   + +V  
Sbjct: 83  KYATKLLPVFGAMHPDNIKPEHVRKYMDKRGLSSRTQANREKTFMSRAYRWGYERGFVKG 142

Query: 156 NPCLSVERPKRKT 168
           NPC  V++ K ++
Sbjct: 143 NPCKGVKQFKEES 155


>gi|9626273|ref|NP_040609.1| integration protein [Enterobacteria phage lambda]
 gi|138569|sp|P03700|VINT_LAMBD RecName: Full=Integrase
 gi|215133|gb|AAA96562.1| integration protein [Enterobacteria phage lambda]
 gi|16209072|gb|AAL09849.1| integrase [CRIM helper plasmid pAH57]
 gi|16209183|gb|AAL09916.1| integrase [CRIM helper plasmid pINT-ts]
 gi|29415431|gb|AAO12751.1| integrase [CRIM plasmid pKD15]
 gi|29415712|gb|AAO12755.1| integrase [CRIM plasmid pKD16]
 gi|62825139|gb|AAY16131.1| lambda INT [Cloning vector lambda gt10]
 gi|63014370|gb|AAY25566.1| Int [Mus musculus]
          Length = 356

 Score = 35.8 bits (81), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 47/215 (21%), Positives = 82/215 (38%), Gaps = 11/215 (5%)

Query: 25  FRKGHGRRIRLPYPHESTFIPAYMSALTGST--PKREYINSPRKKPTTLKWLISEYRKSA 82
           F  G  RRI +     +  I A +   +G    P    INS      TL   +  Y K  
Sbjct: 35  FGLGRDRRIAI-----TEAIQANIELFSGHKHKPLTARINS--DNSVTLHSWLDRYEKIL 87

Query: 83  HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSM 140
               +   + I++ S    I R   D     ITTK I + +     +   +SA    +++
Sbjct: 88  ASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAMLNGYIDEGKAASAKLIRSTL 147

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200
              F+ A+ + ++  N   +    K +    R    E ++ +++  S     RLA E  +
Sbjct: 148 SDAFREAIAEGHITTNHVAATRAAKSEVRRSRLTADEYLKIYQAAESSPCWLRLAMELAV 207

Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
            +G R  D C      + +    ++  KTG  I +
Sbjct: 208 VTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAI 242


>gi|25010286|ref|NP_734681.1| site-specific recombinase, phage integrase family [Streptococcus
           agalactiae NEM316]
 gi|76787040|ref|YP_328946.1| phage integrase family site specific recombinase [Streptococcus
           agalactiae A909]
 gi|76798149|ref|ZP_00780402.1| site-specific recombinase, phage integrase family [Streptococcus
           agalactiae 18RS21]
 gi|77405331|ref|ZP_00782426.1| site-specific recombinase, phage integrase family [Streptococcus
           agalactiae H36B]
 gi|23094638|emb|CAD45856.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76562097|gb|ABA44681.1| site-specific recombinase, phage integrase family [Streptococcus
           agalactiae A909]
 gi|76586508|gb|EAO63013.1| site-specific recombinase, phage integrase family [Streptococcus
           agalactiae 18RS21]
 gi|77176009|gb|EAO78783.1| site-specific recombinase, phage integrase family [Streptococcus
           agalactiae H36B]
          Length = 384

 Score = 35.8 bits (81), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 3/66 (4%)

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRP-WTKEDMQQFKS--FWSEGSQPRLAFEFL 199
           +F +A++ + +  NP   +  PKRK   I   WT +++Q+F +     E  +    F  L
Sbjct: 142 VFDFAIKMKLLKHNPMTEIIMPKRKKTRIENYWTVQELQEFLAIVLQEEPYKHYALFRLL 201

Query: 200 LYSGLR 205
            YSGLR
Sbjct: 202 AYSGLR 207


>gi|116494854|ref|YP_806588.1| integrase [Lactobacillus casei ATCC 334]
 gi|191638361|ref|YP_001987527.1| Tyrosine recombinase xerD [Lactobacillus casei BL23]
 gi|227535149|ref|ZP_03965198.1| site-specific DNA tyrosine recombinase [Lactobacillus paracasei
           subsp. paracasei ATCC 25302]
 gi|239631553|ref|ZP_04674584.1| tyrosine recombinase xerD [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|301066416|ref|YP_003788439.1| integrase [Lactobacillus casei str. Zhang]
 gi|116105004|gb|ABJ70146.1| tyrosine recombinase XerD subunit [Lactobacillus casei ATCC 334]
 gi|190712663|emb|CAQ66669.1| Tyrosine recombinase xerD [Lactobacillus casei BL23]
 gi|227187194|gb|EEI67261.1| site-specific DNA tyrosine recombinase [Lactobacillus paracasei
           subsp. paracasei ATCC 25302]
 gi|239526018|gb|EEQ65019.1| tyrosine recombinase xerD [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|300438823|gb|ADK18589.1| Integrase [Lactobacillus casei str. Zhang]
 gi|327382389|gb|AEA53865.1| hypothetical protein LC2W_1532 [Lactobacillus casei LC2W]
 gi|327385590|gb|AEA57064.1| hypothetical protein LCBD_1567 [Lactobacillus casei BD-II]
          Length = 293

 Score = 35.8 bits (81), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 48/218 (22%), Positives = 87/218 (39%), Gaps = 31/218 (14%)

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE- 188
           P+S  + ++++R  +++ +R+  ++ +P   ++ PKR      P T    Q+  +  ++ 
Sbjct: 65  PASVSRMISALRKFYRFLLREGAISADPMTKIDTPKRAQH--LPATLSS-QEVDALMAKP 121

Query: 189 ------GSQPRLAFEFLLYSGLRCSD--SCRAGVQHLQNNIFSI--KTQKTGTI------ 232
                 G + R  FE +  +GLR S+    R    HL  N+  +  K  K   +      
Sbjct: 122 DTDKPLGLRDRAIFELMYATGLRVSEVVDLRLDQLHLAMNLLQVTGKGDKERLVPISPQA 181

Query: 233 ---ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW--FKAKATKAGVNKSA- 286
              +   L +   KLL    +  +  F+N     M  T+  IW   KA     G+ K   
Sbjct: 182 TQWVDRYLQEARPKLLKR--VQPKNVFVNFHGGPM--TRQGIWKNLKAYIASIGIEKDVT 237

Query: 287 -HGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
            H +R   AT   + GA    +    G   +   + YT
Sbjct: 238 PHTLRHSFATRLLENGADLRVVQELLGHSDISTTQIYT 275


>gi|319405702|emb|CBI79325.1| Phage-related integrase/recombinase (fragment) [Bartonella sp. AR
           15-3]
          Length = 68

 Score = 35.8 bits (81), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 30/60 (50%)

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343
           KSA+ +RK +    A++ A   +    + W        YTK ADR +L I+  R++ S V
Sbjct: 9   KSAYSLRKLATARFANSDAIVTQFKVIFSWTDDTMVALYTKNADRKKLAIEMIRKLKSDV 68


>gi|157692850|ref|YP_001487312.1| site-specific tyrosine recombinase XerD [Bacillus pumilus SAFR-032]
 gi|157681608|gb|ABV62752.1| tyrosine recombinase [Bacillus pumilus SAFR-032]
          Length = 296

 Score = 35.8 bits (81), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 48/263 (18%), Positives = 111/263 (42%), Gaps = 28/263 (10%)

Query: 87  LAVNSRISF----ESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFLTS 139
           L+ N+ +S+    ++Y   ++      D + +T  HI   ++  K    +  ++++ L+S
Sbjct: 18  LSENTIVSYKRDLQNYLSFLMTHEQLSDIKDVTRLHIIHYLKQLKEEGKSSKTSVRHLSS 77

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLA 195
           +R   ++ +R++    +P  ++E  K + +  +  +  ++++     ++ +    + +  
Sbjct: 78  IRSFHQFLLREKVTKDDPSWNIETQKTERKLPKVLSLGEVEKLLDTPNQHTPFDYRDKAM 137

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-------------QKTGTIITVELPDGFM 242
            E L  +G+R S+     +  +   +  I+              +   + I   L  G  
Sbjct: 138 LELLYATGIRVSEMLDLTLADVHLTMGFIRCFGKGRKERIVPIGEAAASAIEEYLEKGRG 197

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
           KLL   P   +  F+N+  +KM+   F    K +A +AG+ K  + H +R   AT   + 
Sbjct: 198 KLLKKQP--ADALFLNHHGKKMSRQGFWKNLKKRALEAGIQKELTPHTLRHSFATHLLEN 255

Query: 301 GATAHELMATYGWKTVDQAETYT 323
           GA    +    G   +   + YT
Sbjct: 256 GADLRAVQEMLGHADISTTQIYT 278


>gi|329667143|gb|AEB93091.1| putative prophage integrase [Lactobacillus johnsonii DPC 6026]
          Length = 391

 Score = 35.8 bits (81), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 8/81 (9%)

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSV------ERPKRKTEGIRPWTKEDMQQFKSFWSE-G 189
           +     LF++ +R  YV+ NP   +       RP+R TE    +T++++ QF     E G
Sbjct: 138 INEFNALFEYGIRLNYVSENPLKRIIIPKKTSRPRRDTEH-NVYTRDELNQFLEVAKEYG 196

Query: 190 SQPRLAFEFLLYSGLRCSDSC 210
                 F+ L  +GLR S++ 
Sbjct: 197 LVQYTYFKLLSATGLRKSEAL 217


>gi|160883082|ref|ZP_02064085.1| hypothetical protein BACOVA_01050 [Bacteroides ovatus ATCC 8483]
 gi|156111554|gb|EDO13299.1| hypothetical protein BACOVA_01050 [Bacteroides ovatus ATCC 8483]
          Length = 293

 Score = 35.8 bits (81), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 53/241 (21%), Positives = 94/241 (39%), Gaps = 29/241 (12%)

Query: 107 GDFDYRKITTKHIRSGVES---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163
           G F+  ++  + IR  + S   + +T +S  + L+S+R  +K+ +RQ    I+P   ++ 
Sbjct: 40  GKFNPLEVEAELIREWIVSLMDKGYTSTSVNRKLSSLRTFYKYLLRQGETTIDPLRKIKG 99

Query: 164 PKRK---------TEGIRPWTKEDM-QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG 213
           PK K          E  R   + D  + FK     G + RL  E    +G+R S+     
Sbjct: 100 PKNKKPLPVFLKENEMNRLLDETDFGEGFK-----GCRDRLIIEVFYATGMRLSELIGLD 154

Query: 214 VQHLQNNIFSIK-TQKTGTIITVELPDGFMKLL--------AMTPIGKETFFINNDKQKM 264
            + +  +   +K T K      +   D   +L+           P   E FFI  + +++
Sbjct: 155 NKDVDFSASLLKVTGKRNKQRLIPFGDELQELMLEYINVRNETIPERSEAFFIRENGERL 214

Query: 265 NATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
                    K   +K      KS H +R   AT   +  A    +    G +++   E Y
Sbjct: 215 YKNLVYNLVKRNLSKVATLKKKSPHVLRHTFATTMLNNEAELGVVKELLGHESITTTEIY 274

Query: 323 T 323
           T
Sbjct: 275 T 275


>gi|270016302|gb|EFA12748.1| hypothetical protein TcasGA2_TC010275 [Tribolium castaneum]
          Length = 482

 Score = 35.8 bits (81), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 2/60 (3%)

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346
           H +R+ SAT+  DAGA    L    GW++   AETY   +  +   I+ + +IS++  S+
Sbjct: 74  HCLRRSSATLLVDAGADITALKRHGGWRSTTVAETYIDHS--LNNKIQTANKISNITQSE 131


>gi|189465402|ref|ZP_03014187.1| hypothetical protein BACINT_01751 [Bacteroides intestinalis DSM
           17393]
 gi|189437676|gb|EDV06661.1| hypothetical protein BACINT_01751 [Bacteroides intestinalis DSM
           17393]
          Length = 294

 Score = 35.8 bits (81), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 47/217 (21%), Positives = 88/217 (40%), Gaps = 20/217 (9%)

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
            R +T +S  + L+S+R  +K+ +R+  VA+NP   +  PK K        + DM +   
Sbjct: 62  DRGYTSTSINRKLSSLRSFYKFLLRKGEVAVNPLQKITGPKNKKPLPAFLRESDMDRLLD 121

Query: 185 FWS-----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-----IIT 234
                   +G +  +  E    +G+R S+    G+ +   +  S   + TG      +I 
Sbjct: 122 EVDFGEGFKGCRDHMIIEMFYATGVRLSELI--GLDNKDVDFSSSLIKVTGKRNKQRLIP 179

Query: 235 V--ELPDGFMKLLAM----TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286
              EL    M+ + +     PI    FF+  + ++++ +      K   +K    K  S 
Sbjct: 180 FGEELKIAMMEYVDVRNEAVPIRTNAFFVRENGERLSRSIVENLVKRNLSKVVTLKKRSP 239

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           H +R   AT   +  A    +    G +++   E YT
Sbjct: 240 HVLRHTFATTMLNHDAELGAIKELLGHESLATTEVYT 276


Searching..................................................done


Results from round 2




>gi|254780134|ref|YP_003064547.1| phage-related integrase/recombinase [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254039811|gb|ACT56607.1| phage-related integrase/recombinase [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|317120848|gb|ADV02669.1| phage-related integrase/recombinase [Candidatus Liberibacter
           asiaticus]
          Length = 348

 Score =  451 bits (1159), Expect = e-125,   Method: Composition-based stats.
 Identities = 348/348 (100%), Positives = 348/348 (100%)

Query: 1   MTPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60
           MTPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY
Sbjct: 1   MTPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
           INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR
Sbjct: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
           SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ
Sbjct: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
           QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG
Sbjct: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADA 300
           FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADA
Sbjct: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADA 300

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
           GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP
Sbjct: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348


>gi|240850345|ref|YP_002971738.1| phage-related integrase/recombinase [Bartonella grahamii as4aup]
 gi|240267468|gb|ACS51056.1| phage-related integrase/recombinase [Bartonella grahamii as4aup]
          Length = 347

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 124/340 (36%), Positives = 189/340 (55%), Gaps = 5/340 (1%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHES-TFIPAYMSALTG-STPKREYINSP 64
            PP + KE TRHGKII+Y R GHG+RIR+   + +  F+  Y SAL            + 
Sbjct: 5   RPPHLVKEVTRHGKIIWYVRIGHGKRIRIRGTYGTQEFVDNYKSALAELQGLILPKSKTG 64

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
           +    +  WL+ +Y  S HW SLA  ++   E    ++    G+  YR+I   HI +GVE
Sbjct: 65  KLVEGSFAWLLKQYFNSVHWHSLAKATKRQRELILMKVCDAIGNIPYREIKKSHITAGVE 124

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK-TEGIRPWTKEDMQQFK 183
            RK  P++A  FL ++  LF WA+ QE +  NP L ++RP     +G   WT+ED++++ 
Sbjct: 125 RRKEKPTAAQNFLKALNGLFNWAIDQELLENNPALGIKRPPLNNKDGFAVWTEEDVEKYY 184

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDGF 241
             WS GS  R+  + LLY+GLR  D+ R G + +++NI  +KT+K+   T + + +    
Sbjct: 185 HHWSHGSHERVWIDVLLYTGLRRGDAVRIGWKDVKDNIIHLKTEKSKFQTDVFLPILPEL 244

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAG 301
            + L + PIG ETF    +  K+    F   F+     AG+ KSAHG+RK +AT +A++G
Sbjct: 245 AETLKIGPIGNETFICGKNGNKLVKESFGNLFREACNAAGIKKSAHGLRKLAATRAANSG 304

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
           AT  +L A +GW   + A  YTK ADR RL I+  +++  
Sbjct: 305 ATVSQLKAIFGWTDDNMASLYTKSADRKRLAIEAIKKLQK 344


>gi|163868166|ref|YP_001609374.1| phage-related integrase/recombinase [Bartonella tribocorum CIP
           105476]
 gi|161017821|emb|CAK01379.1| phage-related integrase/recombinase [Bartonella tribocorum CIP
           105476]
          Length = 345

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 119/340 (35%), Positives = 187/340 (55%), Gaps = 5/340 (1%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHES-TFIPAYMSALTG-STPKREYINSP 64
            PP++ KE TRH KII+Y R GHG+RIR+   + +  F+  Y SAL            + 
Sbjct: 5   RPPYLLKEVTRHNKIIWYVRIGHGKRIRIRGTYGTQEFVDNYKSALAELQGIIPPKPKTG 64

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
           +    +  WL+ +Y  S+ W  LA  ++   E    ++    G+  Y+ I  KHI +GVE
Sbjct: 65  KLIEGSFAWLLKQYFNSSDWYCLAKATKRQKELILMKVCDSIGNIPYQAIEKKHIVAGVE 124

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK-TEGIRPWTKEDMQQFK 183
            RK TP+ A  FL ++  LF WA+ Q  +  NP + V+RP     +G   WT++D++++ 
Sbjct: 125 RRKETPAMARNFLKALNGLFNWAIDQGLLESNPTVGVKRPALNNKDGFAVWTEDDVEKYY 184

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDGF 241
             WS G+  R+  + LLY+GLR  D+ R G +++++NI  +KT+K+   T + + +    
Sbjct: 185 QRWSHGTHERVWIDVLLYTGLRRGDAVRIGWKNVKDNIIHLKTEKSKYQTDVFLPILPEL 244

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAG 301
            + L + PIG ETF  +   QK     F   F+     AG+ KSAHG+RK +AT +A++G
Sbjct: 245 AETLKIGPIGNETFICSKTNQKFIKESFGNAFRDACNAAGIKKSAHGLRKLAATRAANSG 304

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
           AT  +L A +GW     A  YTK ADR RL ++  +++  
Sbjct: 305 ATVSQLKAIFGWTEDQMASLYTKSADRKRLALEAIKKLQK 344


>gi|319405810|emb|CBI79435.1| phage-related integrase/recombinase [Bartonella sp. AR 15-3]
          Length = 345

 Score =  368 bits (944), Expect = e-99,   Method: Composition-based stats.
 Identities = 118/344 (34%), Positives = 188/344 (54%), Gaps = 6/344 (1%)

Query: 3   PSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHE-STFIPAYMSALTG-STPKREY 60
           P  R PP + KE TRHGK+I+Y R GHG+R+R+   +    FI  Y  A+          
Sbjct: 2   PKQR-PPHLVKEITRHGKVIWYVRIGHGQRVRIYGTYGAQEFIDNYKRAIAQLQGLILPK 60

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
               +    +  WL+ +Y  S +W SLA  ++   E    ++    G   Y+ I  KHI 
Sbjct: 61  SKPGKLVEGSFAWLLKQYFNSVNWYSLAKTTQRQKELILMKVCDSVGSIPYKAINKKHII 120

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK-TEGIRPWTKEDM 179
           +GVE RK TP+SA  FL ++  LF WA+ Q  +  NP L+++RP  K  +G   WT+ED+
Sbjct: 121 AGVERRKETPASARNFLKALNGLFTWAIEQNLLDENPTLNIKRPPLKNKDGFPAWTEEDI 180

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVEL 237
           +++   W  G+  R+  + +LY+GLR  D+ R G + +++NI  +KT+K+   T + + +
Sbjct: 181 EKYYKQWPHGTHERVWIDVILYTGLRRGDAMRIGWKDVKDNIIHLKTEKSKFQTDVFLPI 240

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATIS 297
                + L + PIG ETF      +K+    F   F+     A + KSAHG+RK +AT +
Sbjct: 241 LPELAETLKIGPIGDETFICGKGNKKLTKESFGNLFREACNTASIKKSAHGLRKLAATRA 300

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
           A++GAT  +L A +GW   + A  YTK ADR +L +++ +++  
Sbjct: 301 ANSGATVSQLKAIFGWTNDNMASLYTKSADRKKLALESIKKLQK 344


>gi|159043537|ref|YP_001532331.1| integrase family protein [Dinoroseobacter shibae DFL 12]
 gi|157911297|gb|ABV92730.1| integrase family protein [Dinoroseobacter shibae DFL 12]
          Length = 370

 Score =  356 bits (913), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 103/350 (29%), Positives = 173/350 (49%), Gaps = 8/350 (2%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPY-PHESTFIPAYMSALTGSTPKREYIN 62
           S+RL   V ++  RHG +  Y R+    ++RL   P    F+  Y +A+ G+TP+   + 
Sbjct: 12  SIRL-KHVIEDTDRHGNVRIYLRRPGHLKVRLRSQPGTEDFLAEYRAAMMGATPRAPTVP 70

Query: 63  SPRK-KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121
             R+    + KWL  +Y  SA +  L+  ++       D+I  KSG   Y  +  +H+R 
Sbjct: 71  LDRRGSKGSFKWLCEQYYVSAEYQRLSGRTKYVRRGILDRICEKSGSKPYALMEPRHVRR 130

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
             +     P +A  F+ ++R ++ +AV  E    NP   V   K K +G   WT E+++Q
Sbjct: 131 MRDEMADRPEAANGFVKALRQVYSFAVEYELAQRNPARDVPYLKAKGDGFHSWTMEEVRQ 190

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----ITVEL 237
           F+     GS+PRLA   +LY+G R SD  R G QH+++   ++   K        +++ +
Sbjct: 191 FEEHHPIGSKPRLALALMLYTGQRRSDIVRLGPQHIKDGWITLTQAKNRDRKPVTLSIPV 250

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATI 296
                 +L  TP G   F +    +   +  F  WF+ +  +AG+ + SAHG+RK  A +
Sbjct: 251 LPELKAVLDATPTGNLAFLVTAFGKPFTSNGFGNWFRKQCDEAGLKHCSAHGLRKAGAAL 310

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346
           +A+ GAT  +LMA +GW T+ +A  YT+ A +  L     + +S   D  
Sbjct: 311 AAENGATERQLMAIFGWTTMKEASRYTRAARQRVLAASGMKLLSRGGDGP 360


>gi|319408665|emb|CBI82320.1| phage-related integrase/recombinase [Bartonella schoenbuchensis R1]
          Length = 347

 Score =  353 bits (906), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 122/344 (35%), Positives = 182/344 (52%), Gaps = 6/344 (1%)

Query: 3   PSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHES-TFIPAYMSALTG-STPKREY 60
           P  R PP + KE TRHGK I+Y R  HG R R+   + +  F+  Y  AL+         
Sbjct: 2   PKQR-PPHLVKEITRHGKTIWYVRISHGPRRRVHGVYGTQEFVDDYKKALSELQGYTLPK 60

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
             S +    +  WL+ +Y  S  W  L+  ++   E    ++    GD  Y+ I   HI 
Sbjct: 61  SKSDKFVEGSFIWLLKQYFDSVTWHELSHVTKRQKELILMKVSDAIGDIPYKAIKKDHIV 120

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK-TEGIRPWTKEDM 179
           +GVE RK TP++A  FL ++  LFKWA+ Q  +  NP   V+RP  K  EG   WT+ED+
Sbjct: 121 AGVERRKETPATARNFLKAVNGLFKWAIEQGLLEDNPAAGVKRPSLKNKEGFPAWTEEDI 180

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVEL 237
            ++   W  G+  R+  + LLY+GLR  D  R G + + +NI  +KT+K+   T + + +
Sbjct: 181 NKYYQQWPLGTHERVWLDVLLYTGLRRGDVVRIGWKDVTDNIIHLKTEKSKFQTDVFLPI 240

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATIS 297
                K L   PIG ETF      +K+    F   F+    +AG+ KSAHG+RK +AT +
Sbjct: 241 LPELTKTLETGPIGDETFICGKGGKKLTKETFGNLFRDACNEAGIKKSAHGLRKLAATRA 300

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
           A+AGAT  +L A +GW   + A  YTK ADR RL +++ +++  
Sbjct: 301 ANAGATVSQLKAIFGWTDDEMASLYTKTADRKRLALESIKKLQK 344


>gi|89055356|ref|YP_510807.1| phage integrase [Jannaschia sp. CCS1]
 gi|88864905|gb|ABD55782.1| phage integrase [Jannaschia sp. CCS1]
          Length = 370

 Score =  351 bits (900), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 101/350 (28%), Positives = 169/350 (48%), Gaps = 8/350 (2%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPY-PHESTFIPAYMSALTGSTPKREYIN 62
           S+RL   V ++  RHG +  Y R+    ++RL   P    F+  Y  A+ G+TP+     
Sbjct: 12  SIRL-KHVIEDTDRHGNVRLYLRRPGHLKVRLRSQPGTEDFLAEYRVAMMGATPRAPAGP 70

Query: 63  SPRK-KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121
             R+    + KWL  +Y  SA +  L+  ++       D+I  K+G   Y  +  +H+R 
Sbjct: 71  LERRGSKGSFKWLCEQYYVSAEYQRLSGRTKYVRRGILDRICEKNGSKPYALMEPRHVRR 130

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
             +     P +A  F+ ++R ++ +AV  E    NP   V   K K +G   WT E+++Q
Sbjct: 131 MRDEMADRPEAANGFVKALRQVYAFAVEYELAQRNPARDVPYLKAKGDGFHSWTMEEVRQ 190

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----ITVEL 237
           F+     GS+PRLA   +LY+G R SD  R G QH+++   ++   K        +++ +
Sbjct: 191 FEDHHPIGSKPRLALALMLYTGQRRSDIVRLGPQHIKDGWITMTQAKNRDRKPVTLSIPV 250

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATI 296
                 +L  TP G   F +    +   +  F  WF+ +   AG+ + SAHG+RK  A +
Sbjct: 251 LLELKAVLDATPTGNLAFLVTTFGKPFTSNGFGNWFRKQCDVAGLKHCSAHGLRKAGAAL 310

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346
           +A+ GAT  +LMA +GW T+ +A  YT+ A +  L     + +S      
Sbjct: 311 AAENGATERQLMAIFGWSTMKEASRYTRAARQKVLAASGMKLLSRDAGGP 360


>gi|319408877|emb|CBI82534.1| phage-related integrase/recombinase [Bartonella schoenbuchensis R1]
          Length = 347

 Score =  351 bits (900), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 122/340 (35%), Positives = 181/340 (53%), Gaps = 5/340 (1%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHES-TFIPAYMSALTG-STPKREYINSP 64
            PP + KE TRHGK I+Y R GHG+R R+   + +  F+  Y  AL+     K       
Sbjct: 5   RPPHLVKEITRHGKTIWYVRIGHGQRRRVHGVYGTQEFVDDYKKALSELQGYKLPKSKPG 64

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
           +    +  WL+ +Y  S  W +LA  ++   E    ++    GD  Y+ I   HI +GVE
Sbjct: 65  KLVEGSFIWLLKQYFNSLTWHNLAHATKRQKELILMKVSDAIGDIPYKAIKKSHIIAGVE 124

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK-TEGIRPWTKEDMQQFK 183
            RK TP++A  FL ++  LFKWA+ Q  +  NP   V+RP  K  +G   W +ED+ ++ 
Sbjct: 125 RRKETPANARNFLKAVNSLFKWAIEQGLLEDNPAAGVKRPSLKNKDGFPAWIEEDINKYY 184

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDGF 241
             W  G+  R+  + LLY+GLR  D  R G + + +N+  +KT+K+   T + + +    
Sbjct: 185 QQWPLGTHERVWVDVLLYTGLRRGDVVRIGWKDVTDNVIHLKTEKSKFQTDVFLPILPEL 244

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAG 301
            K L   P+G ETF      +K+    F   FK    +AGV KSAHG+RK +AT +A+AG
Sbjct: 245 AKTLETGPVGNETFICGKGGKKLTKETFGNLFKNACNEAGVKKSAHGLRKLAATRAANAG 304

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
           AT  +L A +GW   D A  YTK ADR RL I+  +++  
Sbjct: 305 ATVAQLKAIFGWTEDDMASLYTKTADRKRLAIEAIKKLQK 344


>gi|49475466|ref|YP_033507.1| integrase /recombinase [Bartonella henselae str. Houston-1]
 gi|49238272|emb|CAF27486.1| Integrase /recombinase [Bartonella henselae str. Houston-1]
          Length = 345

 Score =  348 bits (894), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 115/341 (33%), Positives = 188/341 (55%), Gaps = 5/341 (1%)

Query: 6   RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHES-TFIPAYMSAL-TGSTPKREYINS 63
           R PP + KE TRHGK+++Y R GHG R R+   + +  F+ +Y  A+        + +  
Sbjct: 4   RRPPHLVKETTRHGKVVWYVRIGHGPRYRIEGTYGTQEFVDSYTLAIKQAQNGTPKRMTQ 63

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
            R    +  WL+ +Y +S  W + + +++       + + +  G+  Y+ I  +HI   V
Sbjct: 64  TRLTEGSFDWLLHQYLQSMQWHNQSESTKKVKYRILNNVSKHIGNHAYKSIEKRHILDAV 123

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK-RKTEGIRPWTKEDMQQF 182
           + R+ TP++A  FLTS+  LF WAV    +  NP L+++ PK   +EG++PW +ED+ ++
Sbjct: 124 DRRRATPAAAKHFLTSLNGLFNWAVDNALLNRNPALNIKAPKSLNSEGLQPWLEEDIDKY 183

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT--GTIITVELPDG 240
              WS GS  R+  + LLY+GLR  D+ R G + +++NI  +KT+K+   T + + +   
Sbjct: 184 YHHWSHGSHERVWIDVLLYTGLRRGDAVRIGWKDVKDNIIHLKTEKSQFKTDVFLPILPE 243

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADA 300
             + L + PIG ETF       K+    F   F+     AG+ KSAHG+RK +AT +A+A
Sbjct: 244 LTETLQIGPIGDETFICGKSGNKLVKESFGNLFREACNAAGIKKSAHGLRKLAATRAANA 303

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
           GAT  ++ A +GW     A  YTK ADR RL I+  +++  
Sbjct: 304 GATVSQMKALFGWTEDKMASLYTKTADRKRLAIEAIKKLQK 344


>gi|319408072|emb|CBI81725.1| phage-related integrase/recombinase [Bartonella schoenbuchensis R1]
          Length = 347

 Score =  347 bits (891), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 120/340 (35%), Positives = 180/340 (52%), Gaps = 5/340 (1%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHES-TFIPAYMSALTG-STPKREYINSP 64
            PP + KE TRHGK I+Y R GHG+R R+   + +  F+  Y  AL+     K       
Sbjct: 5   RPPHLVKEITRHGKTIWYVRIGHGQRRRVHGVYGTQEFVDDYKKALSELQGYKLPKSKPG 64

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
           +    +  WL+ +Y  S  W +LA  ++   E    ++    GD  Y+ I   HI +GVE
Sbjct: 65  KLVEGSFIWLLKQYFNSLTWHNLAHATKRQKELILMKVSDAIGDIPYKAIKKSHIIAGVE 124

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK-TEGIRPWTKEDMQQFK 183
            RK TP++A  FL ++  LFKWA+ Q  +  NP   V+RP  K  +G   W +ED+ ++ 
Sbjct: 125 RRKETPANARNFLKAVNSLFKWAIEQGLLEDNPAAGVKRPSLKNKDGFPAWIEEDINKYY 184

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDGF 241
             W  G+  R+  + LLY+GLR  D  R G + + +N+  +KT+K+   T + + +    
Sbjct: 185 QQWPLGTHERVWVDVLLYTGLRRGDVVRIGWKDVTDNVIHLKTEKSKFQTDVFLPILPEL 244

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAG 301
            K L   PIG ETF      +K+    F   F+    +AGV KSAHG+RK +AT +A+AG
Sbjct: 245 TKTLETGPIGDETFICGKGGKKLTKEAFGNLFRDACNEAGVKKSAHGLRKLAATRAANAG 304

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
           AT  +L A +GW     A  YTK ADR RL +++  ++  
Sbjct: 305 ATVAQLKAIFGWTEDRMASLYTKTADRKRLALESIEKLQK 344


>gi|319409101|emb|CBI82745.1| phage-related integrase/recombinase [Bartonella schoenbuchensis R1]
          Length = 347

 Score =  347 bits (889), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 120/340 (35%), Positives = 181/340 (53%), Gaps = 5/340 (1%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHES-TFIPAYMSAL-TGSTPKREYINSP 64
            PP + KE TRHGK I+Y R GHG+R R+   + +  F+  Y  AL          I   
Sbjct: 5   RPPHLIKEITRHGKTIWYVRIGHGQRYRVYGTYGTQEFVDNYTLALKEAQNGLPRQIKRT 64

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
           R    +  WL+ +Y +S  W + A +++   +   + I +  G   Y+ I  +HI   VE
Sbjct: 65  RLMEGSFDWLMHQYLQSMQWHNQAESTKKVKQRILNNISQHIGTCSYKSIEKQHILDAVE 124

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR-KTEGIRPWTKEDMQQFK 183
            R+ TP++A  FLT++  LF WAV    +  NP  +++ PK   TEG  PW +ED+ ++ 
Sbjct: 125 RRRETPAAARHFLTALNGLFNWAVDNSLLHRNPAFNIKPPKSFNTEGFSPWLEEDIDKYH 184

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDGF 241
             W  G+  R+  + LLY+GLR  D  R G + + +NI  +KT+K+   T + + +    
Sbjct: 185 QRWPLGTHERVWIDVLLYTGLRRGDVVRVGWKDVTDNIIHLKTEKSKFQTDVFLPILPEL 244

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAG 301
            K L   PIG ETF    + +K+    F   F+     AG+ KSAHG+RK +AT +A+AG
Sbjct: 245 AKTLEAGPIGNETFICGKEGKKLTKESFGNLFRKACNAAGIKKSAHGLRKLAATRAANAG 304

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
           AT  +L A +GW   D A  YTK ADR RL I+  +++  
Sbjct: 305 ATVSQLKAIFGWTEDDMASLYTKTADRKRLAIEAIKKLQK 344


>gi|319406688|emb|CBI80325.1| phage-related integrase/recombinase [Bartonella sp. 1-1C]
          Length = 349

 Score =  347 bits (889), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 118/348 (33%), Positives = 188/348 (54%), Gaps = 9/348 (2%)

Query: 1   MTPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHES-TFIPAYMSALT---GSTP 56
           MT     PP + K+ T+HGKI++Y R GHG+R R+   + +  FI  Y S+L    G  P
Sbjct: 1   MTMPKPRPPHLVKQITQHGKIVWYVRIGHGQRRRVHGTYGTQEFIDNYKSSLAELHGIIP 60

Query: 57  KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT 116
            +      +    +  WL+ +Y  S +W +LA  ++   E    ++    G+  YR+I  
Sbjct: 61  PKPKPG--KLIEGSFAWLLKQYFNSINWHNLAKGTKRQRELILMKVYDTIGNIPYREIKK 118

Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK-TEGIRPWT 175
            HI +GVE RK  PS+A  FL ++  LF WA+ Q  +  NP + V++P     +G   WT
Sbjct: 119 AHIIAGVERRKDKPSTAQNFLKALNGLFNWAIEQGLLENNPTVGVKKPALNNKDGFAAWT 178

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TII 233
           +ED++++   WS G+  R+    LLY+GLR  D+ R G +  ++NI  +KT+K+   T +
Sbjct: 179 EEDVEKYYQQWSVGTYERVWINVLLYTGLRRGDAVRIGWKDTKDNIIHLKTEKSKFQTDV 238

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFS 293
            + +     + L + P+G+ETF       K+    F   F+     AG+ KSAHG+RK +
Sbjct: 239 FLPILPELAETLKIGPVGEETFICGKSGNKLAKESFGNLFREACNAAGIKKSAHGLRKLA 298

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
           AT +A+AGAT  +L A +GW     A  YTK ADR +L ++  +++  
Sbjct: 299 ATRAANAGATVSQLKAIFGWTEDKMASLYTKSADRKKLALEAIKKLQK 346


>gi|240850538|ref|YP_002971937.1| phage-related integrase/recombinase [Bartonella grahamii as4aup]
 gi|240267661|gb|ACS51249.1| phage-related integrase/recombinase [Bartonella grahamii as4aup]
          Length = 345

 Score =  345 bits (885), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 115/341 (33%), Positives = 185/341 (54%), Gaps = 5/341 (1%)

Query: 6   RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHES-TFIPAYMSAL-TGSTPKREYINS 63
           R PP + +ERTRHGK+I+Y R GHG R R+   + +  F+  Y  A+        +    
Sbjct: 4   RRPPHLVRERTRHGKVIWYVRIGHGPRFRIEGTYGTQEFVDNYTLAIKQAQNGSSKTKRR 63

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
            R    +  WL+ +Y +S  W + + +++       + + +  GD  Y+ I  +HI   V
Sbjct: 64  TRLTEGSFDWLLHQYLQSMQWHNQSESTKKVKYRILNNVSKHIGDRAYKSINKQHILEAV 123

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK-RKTEGIRPWTKEDMQQF 182
           + R+ TP++A  FLTS+  LF WAV    +  NP  +++ PK   +EG+ PW +ED+ ++
Sbjct: 124 DRRRETPAAAKHFLTSLNGLFNWAVDNALLNRNPAFNIKAPKSLNSEGLLPWREEDIDKY 183

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT--GTIITVELPDG 240
              WS G+  R+  + LLY+GLR  D+ R G + +++NI  +KT+K+   T + + +   
Sbjct: 184 YHRWSHGTHERVWIDVLLYTGLRRGDAVRIGWKDVKDNIIYLKTEKSQFKTDVFLPILPE 243

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADA 300
             + L + PIG ETF       K+    F   F+     AG+ KSAHG+RK +AT +A+A
Sbjct: 244 LEETLKIGPIGNETFICGKGGNKLVKESFGNLFREACNAAGIKKSAHGLRKLAATRAANA 303

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
           GAT  ++ A +GW     A  YTK ADR RL I+  +++  
Sbjct: 304 GATVSQMKALFGWTEDKMASLYTKTADRKRLAIEAIKKLQK 344


>gi|163867673|ref|YP_001608874.1| phage-related integrase/recombinase [Bartonella tribocorum CIP
           105476]
 gi|161017321|emb|CAK00879.1| phage-related integrase/recombinase [Bartonella tribocorum CIP
           105476]
          Length = 345

 Score =  344 bits (883), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 115/341 (33%), Positives = 181/341 (53%), Gaps = 5/341 (1%)

Query: 6   RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHES-TFIPAYMSAL-TGSTPKREYINS 63
           R PP++  ERTRHGKII+Y R GHG R R+   + +  F+  Y  AL        +    
Sbjct: 4   RRPPYLVCERTRHGKIIWYVRIGHGPRFRIEGTYGTQEFVDNYTLALKQAQNGTSKKRKQ 63

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
            R    +  WL+ +Y +S  W + + +++       + + +  G+  Y+ I   HI   V
Sbjct: 64  TRLVEGSFDWLLHQYLRSIQWHNQSESTKKVKYRILNNVSKHIGERAYKSIGKHHILDAV 123

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR-KTEGIRPWTKEDMQQF 182
           + R+ TP++A  FLTS+  LF WAV    +  NP  +++ PK    EG  PW +ED++++
Sbjct: 124 DRRRATPAAAKHFLTSLNGLFNWAVDNALLNRNPAFNIKPPKSFNAEGFTPWLEEDVEKY 183

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT--GTIITVELPDG 240
              WS  +  R+  + LLY+GLR  D+ R G + +++NI  +KT+K+   T + + +   
Sbjct: 184 YHHWSVDTHERVWVDVLLYTGLRRGDAVRIGWKDVKDNIIHLKTEKSQFKTDVFLPILPE 243

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADA 300
             K L   P+G ETF       K+    F   F+     AG+ KSAHG+RK +AT +A+A
Sbjct: 244 LAKTLEAGPVGDETFICGKGGNKLVKESFGNLFREACNAAGIKKSAHGLRKLAATRAANA 303

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
           GAT  ++ A +GW     A  YTK ADR RL I+  +++  
Sbjct: 304 GATVSQMKALFGWSEDKMASLYTKTADRKRLAIEAIKKLQK 344


>gi|307942454|ref|ZP_07657805.1| integrase family protein [Roseibium sp. TrichSKD4]
 gi|307774740|gb|EFO33950.1| integrase family protein [Roseibium sp. TrichSKD4]
          Length = 356

 Score =  342 bits (876), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 119/352 (33%), Positives = 183/352 (51%), Gaps = 12/352 (3%)

Query: 3   PSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHE----STFIPAYMSALTGSTPKR 58
           P  RLP  V  E++RHG++ Y+FR GHG RIRLP  +     S F+ AY SAL G+ P  
Sbjct: 2   PKSRLP-HVVVEKSRHGRVKYFFRIGHGPRIRLPDDYSTAQASDFMQAYRSALAGTPPPL 60

Query: 59  EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH 118
               S R    TL WL  +Y++SA + SL+  ++ +  +    I+ KSG    R IT + 
Sbjct: 61  PKARS-RHAQNTLGWLFDQYQQSAKFKSLSEGTQRARANLIKGIVSKSGKAQLRDITERA 119

Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEY----VAINPCLSVERPKRKTEGIRPW 174
           +R G E R  TP +A  FL +M+  F W +        +  +P  +V++   KTEG   W
Sbjct: 120 VRQGRERRSATPEAANNFLKTMKSAFAWGIDSGLLDGIIETDPTANVKKITTKTEGFHTW 179

Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234
           T ++++ ++S    G+  RLA + L+Y+GLR  D  + G QH+++ + + KT K G  + 
Sbjct: 180 TVDEIEAYESTHDIGTTARLALDLLIYTGLRRGDVVKVGRQHVKDGVLNYKTGKNGEWVH 239

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNA-TQFSIWFKAKATKAGVNK-SAHGVRKF 292
           + +       +  +P    TF      +  ++   F  WF  +  +AGV K  AHG+RK 
Sbjct: 240 LPILPALQNSIDASPTNDLTFLQTEKGKPFSSAASFGNWFAKRCLEAGVEKGRAHGLRKA 299

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
            A ++A+ GAT  +LMA +GW T D A  YTK A R +L       +    +
Sbjct: 300 GAVLAAERGATTSQLMALFGWTTEDMATLYTKRASRSKLSATAIDLLDRSEN 351


>gi|222107069|ref|YP_002547860.1| Integrase [Agrobacterium vitis S4]
 gi|221738248|gb|ACM39144.1| Integrase [Agrobacterium vitis S4]
          Length = 344

 Score =  338 bits (866), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 86/339 (25%), Positives = 162/339 (47%), Gaps = 6/339 (1%)

Query: 6   RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPY-PHESTFIPAYMSALTGSTPKREYINSP 64
           R P +      RHGKI +Y+R+       L   P    F+ +Y  A+ G   ++  +   
Sbjct: 3   RPPKYCQGFEDRHGKIRWYYRRKGFPIKPLSGLPWSPEFMASYEKAMAG---EKIEVGKS 59

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
           +  P T+  L+  Y K++ +  L+ +++ ++    ++   + G      +  ++++  + 
Sbjct: 60  KSAPGTVSALVVSYYKTSDFQRLSESTKTTYRGIIERFREEHGAKRVHHMQAQNVKKIIG 119

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
            +  TP++A   L  + +L   AV  ++   +P   V++ + K+EG   W +  ++QF +
Sbjct: 120 EKAATPAAANNLLRIIHILMLHAVDLQWRRDDPTKDVKKIRHKSEGFLTWEEHHIEQFTA 179

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
           +   G++  LA   LLY+G R SD  R G QH+++   SI  QKTG ++ +     F  +
Sbjct: 180 YHKPGTRAHLALSLLLYTGQRRSDVVRMGRQHVRDGWISIVQQKTGQLVEIPFHAAFKDV 239

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGA 302
           L   P+   TF      +      F+ WF+    +AG+    S HG+RK +    A+AG 
Sbjct: 240 LNALPLKNMTFLTTAQGKPFTPAGFTNWFRDMTKEAGLPDKLSPHGLRKAACRRLAEAGC 299

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
           T H++MA  G +++D+   YT  A R  L  + +  +  
Sbjct: 300 TPHQIMAISGHQSLDEVTRYTVAASRRELATQAAPHLQG 338


>gi|315497345|ref|YP_004086149.1| integrase family protein [Asticcacaulis excentricus CB 48]
 gi|315415357|gb|ADU11998.1| integrase family protein [Asticcacaulis excentricus CB 48]
          Length = 356

 Score =  333 bits (853), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 108/345 (31%), Positives = 177/345 (51%), Gaps = 13/345 (3%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPY-PHESTFIPAYMSALTGSTPKREYINSPRKK 67
            ++ +   RHG   +YFR+   +++ LP  P    F+ AY +AL+GS  K   I + ++K
Sbjct: 9   AYINRYTDRHGNTRHYFRRPGHKQVALPGKPGSKEFMAAYQAALSGSEGK-PRIGASKEK 67

Query: 68  PTTLKWLISEYRKSAHWGS-LAVNSRISFESYFDQIIR-------KSGDFDYRKITTKHI 119
           P +   L+S Y  SA + + L   S+ ++    +Q          K+GD   +     H+
Sbjct: 68  PGSFGALLSVYYDSAKFRNELKPQSQKAYRILLEQFRELEVTPGVKAGDCLVKDFRPAHL 127

Query: 120 RSG-VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE-GIRPWTKE 177
               ++     P  A   +  +R +FK A+R E +  NP   VE PK K++ GI  W+  
Sbjct: 128 NKLVIDGLADRPGQAKNMIKCLRGVFKCAIRNEMIDSNPAREVETPKAKSKDGIPAWSDA 187

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237
           D++ F   W  G++ RLA   LLY+G R SD  R G QH++     ++  KT   + + +
Sbjct: 188 DIEAFCKHWPSGTKQRLALALLLYTGQRRSDVARMGRQHVREGRIHVRQMKTDARLAIRI 247

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATI 296
                K L + P G+ TF +    +  +   FSIWFK +A  AGV ++SAHG+RK +  +
Sbjct: 248 HSELQKELDLVPPGQMTFMLTEWGKPFSLAGFSIWFKKQAEDAGVQDRSAHGLRKAAGRM 307

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
            A+AG TA ++MA  G +++ +AE YT+ AD+ +LG        +
Sbjct: 308 LAEAGCTAKQIMAILGHQSMTEAERYTRTADQEKLGDGAMELFEA 352


>gi|85716638|ref|ZP_01047608.1| Integrase /recombinase [Nitrobacter sp. Nb-311A]
 gi|85696639|gb|EAQ34527.1| Integrase /recombinase [Nitrobacter sp. Nb-311A]
          Length = 371

 Score =  326 bits (837), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 120/350 (34%), Positives = 184/350 (52%), Gaps = 11/350 (3%)

Query: 6   RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHEST-FIPAYMSALTGSTPKREYINSP 64
           R PP++  ERTRHG  ++Y R+ HG RIRL   + S  F   Y +AL  +      + S 
Sbjct: 4   RRPPYLHSERTRHGARVWYVRRHHGGRIRLRADYGSAAFWQEYRAALDAAPA---LVASA 60

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
             K  TLKW +  YR S+ W +L++ +R   E+ F ++I   G     +I    IR G E
Sbjct: 61  IGKSGTLKWALDRYRASSAWATLSLATRRQRENIFRRVIETGGKTPLTEIDDDVIRDGRE 120

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP--KRKTEGIRPWTKEDMQQF 182
            R  TP  A  F+ +MR    W V ++ +  NP   V+        +G   WT+ ++ +F
Sbjct: 121 RRAATPHQANSFIKAMRAFCAWCVEEKLMTKNPTSGVKLLTGPNDADGFHTWTQAELDRF 180

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK-----TGTIITVEL 237
           ++ W  G++ RLAF+ LLY+GLR  D+ R G QH+++ + SI+T+K      G ++ + +
Sbjct: 181 EARWKVGTRERLAFDVLLYTGLRRGDAVRVGRQHVKDGVISIRTEKHARGKAGELVAIPI 240

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATIS 297
                  LA TP G+  F IN   Q      F  WF+    +A    SAHG+RK  AT +
Sbjct: 241 LAPLAASLAATPTGELEFLINERGQPWRKESFGNWFRDVCREANCPGSAHGLRKAGATRA 300

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
           A+ GA+  +LMA +GW T   A+ YT+ ADR RL    ++ +  V  +++
Sbjct: 301 AEKGASERQLMAIFGWTTGKMAQHYTRSADRARLARDAAQLLLPVQATNE 350


>gi|323136183|ref|ZP_08071265.1| integrase family protein [Methylocystis sp. ATCC 49242]
 gi|322398257|gb|EFY00777.1| integrase family protein [Methylocystis sp. ATCC 49242]
          Length = 341

 Score =  325 bits (832), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 124/337 (36%), Positives = 193/337 (57%), Gaps = 5/337 (1%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHEST-FIPAYMSALTGSTPKREYINSPR 65
            PP++  E +RHG+ ++YFRKG G R+RLP  + S  F  AY +A+ G    ++      
Sbjct: 5   RPPYLHSEISRHGRRVWYFRKGKGPRVRLPDAYGSDDFWSAYHAAMAGEVAPKKPAG--- 61

Query: 66  KKPTTLKWLISEYR-KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
            K  +L+WLI +YR +S+HW  LA+ +R   E  F  +I  +GD  Y  +T   I  G +
Sbjct: 62  AKSGSLRWLIDKYRAESSHWSQLALETRQRRERIFQAVIEAAGDKAYTAVTRAKIVEGRD 121

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
            R+ TPS+A  FL +   LF WA   ++VA NPC  V+   ++T+G RPWT+ D+++F++
Sbjct: 122 RRRATPSAANHFLKARAGLFAWAFEADHVATNPCEGVKMLSQRTDGHRPWTEADIERFEA 181

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
            W  G++ RLA   L+Y+GLR  D  + G QH+++ + S++T+KT T + + +     ++
Sbjct: 182 RWPVGTRERLALAILMYTGLRRGDVVKLGRQHVRDGVISLRTEKTNTPVHLPMLPALAEI 241

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATA 304
           +  +P G   F      + + A  FS  F      AGV+ S HG+RK +AT +A+AGAT 
Sbjct: 242 IDKSPTGDLNFIATKSGRPICADAFSAMFLCACRAAGVDASPHGLRKVAATRAANAGATV 301

Query: 305 HELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
            EL A +GW     A  YTK ADR RL  +   +++ 
Sbjct: 302 AELEALFGWTGGQMASHYTKEADRARLARQAIAKLAK 338


>gi|218528999|ref|YP_002419815.1| integrase family protein [Methylobacterium chloromethanicum CM4]
 gi|218521302|gb|ACK81887.1| integrase family protein [Methylobacterium chloromethanicum CM4]
          Length = 367

 Score =  323 bits (828), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 93/357 (26%), Positives = 160/357 (44%), Gaps = 13/357 (3%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPY-PHESTFIPAYMSALTGSTPKREYIN 62
           +  LP +V  +  RH  + YYFR+    ++RL   P    F+  Y   L G  P+R+  +
Sbjct: 7   TAELPEYVVSDTDRHDNVRYYFRRRPAPKVRLEGIPGSEAFMNKYYDCLDGRIPERKSRS 66

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122
           +P   P +   L   Y  S  + SL V++R       D+I    G      +  +H+R+ 
Sbjct: 67  AP-AAPGSFAALRLAYLGSPEFKSLDVSTRAWQRRALDEISEAHGTKRVAMMQARHVRTL 125

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
              ++ TP++A   L +++ LFKWA      + +P  +V+  K   +G  PW+  +++ +
Sbjct: 126 RNGKRETPAAANTMLKALKALFKWANENGRASSDPTRNVDFLKYAKKGFHPWSPSEVEAY 185

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----ITVELP 238
           ++    G+  RLA E LLY+  R  D  R G  +L    F     K        I + + 
Sbjct: 186 EAAHLVGTTARLALELLLYTAGRREDVVRFGPHNLAAGRFRFVQGKNEDRAPVLIDIPVH 245

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATIS 297
               + +A        F + +  +      F   FK    +AG+ + SAHG RK +A   
Sbjct: 246 PDLAEAIAAAQPSGAIFILTHYGRPFTPNGFGNRFKKWCIQAGLPHCSAHGCRKAAAARL 305

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS------RRISSVVDSDDP 348
           A  GATAH++M+  G +++ + E YT+ A R ++           R   S + ++ P
Sbjct: 306 ATRGATAHQIMSVTGHQSLAEVERYTRSALRAQMADTAMALLPDRRSAGSTIPANRP 362


>gi|92115952|ref|YP_575681.1| phage integrase [Nitrobacter hamburgensis X14]
 gi|91798846|gb|ABE61221.1| phage integrase [Nitrobacter hamburgensis X14]
          Length = 389

 Score =  323 bits (827), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 100/340 (29%), Positives = 160/340 (47%), Gaps = 8/340 (2%)

Query: 8   PPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHE-STFIPAYMSALTGSTPKREYINSPRK 66
           PP +TK+  RHG I +Y R   G ++RL   +    F  AY   L G+           +
Sbjct: 6   PPRLTKDTDRHGNIRWYVRTLDGPKVRLRDEYGTPAFWQAYRDVLAGNIKPPPPSTRIER 65

Query: 67  KP---TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
           KP    +L WL S+Y  SA +  L   +R    +  D I    G+  Y+ +  KHIR+  
Sbjct: 66  KPFDKASLAWLCSQYYTSAEYKQLNERTRYVRRATLDHICAADGEKPYKLLLPKHIRARR 125

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
           ++R   P SA   + ++R +F +A+  +YVA+NP  +V   K K +G   W+ E++++F+
Sbjct: 126 DARADRPESANGMIKALRQVFAFAIENDYVALNPAQAVPYLKAKGDGHHSWSLEEIEKFE 185

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----ITVELPD 239
                G+  RLA   LLY+G R SD    G   ++         K        + + +  
Sbjct: 186 KKHPIGTMARLALALLLYTGQRRSDVIVLGPALVREGWLHFTQFKGREHKPITLDIPIIP 245

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISAD 299
              +++  T  GK+T+ +N   +   A  F  WF  +   A V   AHG+RK +A+  A+
Sbjct: 246 ELQRVIDATACGKDTYLLNGLGRPFTAAGFGNWFHDRCKDAKVPGRAHGLRKAAASRLAE 305

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
            G++ HE+MA  G  T  +   YTK A +  L      R+
Sbjct: 306 LGSSEHEIMAITGHTTSKEVMRYTKAARQKVLAAAAMARL 345


>gi|300021643|ref|YP_003754254.1| integrase family protein [Hyphomicrobium denitrificans ATCC 51888]
 gi|299523464|gb|ADJ21933.1| integrase family protein [Hyphomicrobium denitrificans ATCC 51888]
          Length = 716

 Score =  321 bits (824), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 89/354 (25%), Positives = 163/354 (46%), Gaps = 18/354 (5%)

Query: 10  FVTKERTRHGKIIYYFRKGHGRRIRLPY-PHESTFIPAYMSAL---TGSTPKREYINSPR 65
           ++ ++  RHG +  YFR    R+IRL   P    F   Y S +        K     S  
Sbjct: 13  YLVEDTDRHGNVRIYFRYPGYRKIRLRERPTSPEFAERYSSLIEQFATGCYKEAEKTSVS 72

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII---------RKSGDFDYRKITT 116
             P TL WL++ +R S  + +L  +++ +     + ++             +F   +I  
Sbjct: 73  AVPGTLGWLVTAFRASKDFSNLDPSTQRTRARVLESMLNEPIFQEAAETFRNFPLDRIKL 132

Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
             +    + +K  P +A   + ++R +FKWA  +++   NP +S+ +P+  + G   W  
Sbjct: 133 SDLEVLRDRKKALPGAATDRVKALRPMFKWATSKKHCVANPAISLTKPRLISNGHHTWLP 192

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---- 232
           ++++ F+     G++  LA   +LY+G R SD+ + G QH Q +       K        
Sbjct: 193 DEIEAFQRRHPLGTKAHLALSIMLYTGARRSDAVQLGRQHEQGDSLRWTAHKNRNRYPTI 252

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRK 291
           I + +       +   P G   + +    +      F  WF  +  +AG+   SAHG+RK
Sbjct: 253 IHIPMLQPLAAAIQAGPTGDMVYLLTEYGKPFTIAGFGNWFHDRCIEAGLPQCSAHGLRK 312

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345
             +T +A+AGATAH+LMA +GW+++ +AE YT+ A+R ++       +   V +
Sbjct: 313 AGSTRAAEAGATAHQLMAMFGWRSLAEAEIYTRAAERKKMAALGMAFLEKGVQA 366


>gi|254503745|ref|ZP_05115896.1| site-specific recombinase, phage integrase family protein
           [Labrenzia alexandrii DFL-11]
 gi|222439816|gb|EEE46495.1| site-specific recombinase, phage integrase family protein
           [Labrenzia alexandrii DFL-11]
          Length = 347

 Score =  320 bits (821), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 119/349 (34%), Positives = 188/349 (53%), Gaps = 14/349 (4%)

Query: 3   PSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHE----STFIPAYMSALTGS-TPK 57
           P  RLP  + +E++RHG++ ++FR G G RIRLP  ++    S F+ AY +ALTGS  PK
Sbjct: 2   PKRRLP-HLRREKSRHGRVKWFFRLGDGPRIRLPDDYDLDPASGFMQAYQAALTGSDVPK 60

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK 117
           +     P+    TL WL+ +Y +SA + +LA  +R S+      I  KSG      IT +
Sbjct: 61  KPRSRYPQ---NTLGWLLDQYEQSAKFAALAKATRQSYGYQIKAIREKSGSVRLIDITER 117

Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEY----VAINPCLSVERPKRKTEGIRP 173
            IR   E+R  TP++A  FL  M+V F W +        +  +P   V+R   KTEG   
Sbjct: 118 SIRRAREARAATPNAANAFLKVMKVAFAWGMESGLLDDVIDRDPAKEVKRIDIKTEGHHT 177

Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233
           WT E+++++++ W  G+  RLA + L  +GLR  D  + G QH++     ++  KTG  I
Sbjct: 178 WTVEEIERYEARWPLGTMERLALDLLACTGLRREDVYQIGRQHIKGGEIHVRASKTGGWI 237

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQK-MNATQFSIWFKAKATKAGVNKSAHGVRKF 292
            + +     + +  T  G+ T  +N   Q  +NA  F  WF     +A V   AHG+RK 
Sbjct: 238 YLPVLPALQESIDATKTGELTLLLNTKGQPHLNAKAFGKWFGKACERAEVPGRAHGMRKA 297

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
           +AT+ A+ GAT H++MA +GW +   A  YT+ A+R ++ +++   +  
Sbjct: 298 AATLVAERGATVHQMMAIFGWDSERMAIHYTRKANRKKISLEHGELLDR 346


>gi|218532644|ref|YP_002423460.1| integrase family protein [Methylobacterium chloromethanicum CM4]
 gi|218524947|gb|ACK85532.1| integrase family protein [Methylobacterium chloromethanicum CM4]
          Length = 405

 Score =  316 bits (811), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 99/348 (28%), Positives = 158/348 (45%), Gaps = 18/348 (5%)

Query: 6   RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPY-PHESTFIPAYMSALTGSTPKREYINSP 64
           RLP F  ++  RHG +  Y R+    ++RLP  P    F+ AY +AL G++  +      
Sbjct: 4   RLPRFCVEDVDRHGNVRVYLRRKDWPKVRLPGVPWTEPFMEAYRAALNGTSEDKPRDRYA 63

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK---------SGDFDYRKIT 115
              P T KWL  +Y  SA + +L   ++    +  +    +           DF   ++T
Sbjct: 64  TL-PDTWKWLCQQYVTSARFKTLDPVTQRRRRALLEATYDEPTKPGAKTVFADFPLARLT 122

Query: 116 TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQE--YVAINPCLSVERPKRKTEGIRP 173
              IR   + +   P  A   + ++R  FKWAV  E    + NP   V      +EG   
Sbjct: 123 PAAIRILRDRKADVPDGANNTVKAIRATFKWAVHPEVALASHNPARDVGYIATASEGFHT 182

Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI- 232
           W+ +++++F +    GS+  LA   LL++G R SD+   G QHLQ         K     
Sbjct: 183 WSVDEVKRFVARHPLGSRAYLALCLLLFAGGRRSDAVLFGRQHLQGAWLRYTQHKGRNAK 242

Query: 233 ---ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG-VNKSAHG 288
              + V +       +   P     F +    +   +  F  WFK +  +AG ++ SAHG
Sbjct: 243 PMTLEVPVLPALRAAIEACPSQNLAFLVTERGKPFTSNGFGNWFKDRCREAGLLHCSAHG 302

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
           +RK  AT++A+ GAT  +LMA +GW+T   AE YT+ A++ RL     
Sbjct: 303 LRKAGATLAAENGATERQLMAMFGWRTSKMAEHYTRKAEQKRLAGGAM 350


>gi|170739145|ref|YP_001767800.1| integrase family protein [Methylobacterium sp. 4-46]
 gi|168193419|gb|ACA15366.1| integrase family protein [Methylobacterium sp. 4-46]
          Length = 385

 Score =  312 bits (799), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 113/333 (33%), Positives = 173/333 (51%), Gaps = 8/333 (2%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHEST-FIPAYMSALTGSTPKREYINSPR 65
            PP + +E TRHG +++Y R G G+R R+   + +  F   Y  A+ G   +        
Sbjct: 9   RPPHLVRETTRHGGVVWYVRVGQGKRTRMREAYGTEAFWRDYRLAVEGKPTEAPKA---- 64

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
               TL WLI +Y +SA W  L+  +R    + +  I   +G    + +    I +G + 
Sbjct: 65  AATGTLSWLIGKYVESAEWSDLSAATRKQRHAVYRAIEETAGTKPAKLVDKASILAGRDR 124

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE--GIRPWTKEDMQQFK 183
           R+  P +A  FL +MR LF WAV ++Y+ INP L V+      +  G   WT+E++ +F+
Sbjct: 125 RRDRPHAANNFLKAMRGLFGWAVDRDYLTINPTLGVKLLTGDNDDAGFHAWTEEELARFE 184

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
           S W  G++ RLAF+ LLY+GLR  D+ R G QH++   FSI+T+KTG ++T  +     +
Sbjct: 185 SRWPIGTRQRLAFDLLLYTGLRRGDAVRLGRQHVRGQEFSIRTEKTGAVVTRPVLLPLAQ 244

Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGAT 303
            +  T  G   F             F  WFK    +AGV  S+HG+RK  A  +A+AGAT
Sbjct: 245 SITATKTGGLAFICTERGTPFTKESFGTWFKKVCREAGVPGSSHGLRKAGARRAAEAGAT 304

Query: 304 AHELMATYGWKTV-DQAETYTKGADRIRLGIKN 335
             +L A +GW     ++ TYT+ AD  RL  + 
Sbjct: 305 EAQLNALFGWAPGSRESATYTRTADNARLAREA 337


>gi|329888236|ref|ZP_08266834.1| phage integrase family protein [Brevundimonas diminuta ATCC 11568]
 gi|328846792|gb|EGF96354.1| phage integrase family protein [Brevundimonas diminuta ATCC 11568]
          Length = 343

 Score =  311 bits (798), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 87/341 (25%), Positives = 160/341 (46%), Gaps = 10/341 (2%)

Query: 8   PPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK 67
           P FV+  R RHG + + FR+    + +      +    A+ +  + + PK   I   R K
Sbjct: 5   PKFVSAYRDRHGVLRWRFRRTGSPQSQTRAIFGTEDWWAWYAESSEARPKA--IGQDRTK 62

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127
           P ++  L   Y  SA +  L  N++ +++   D+     G   + ++  +HIR  ++   
Sbjct: 63  PGSIHALAVAYYSSARFLQLKPNTKHTYKGVLDRYRDVHGAKPFSRLEPRHIRQQMDDMA 122

Query: 128 H-------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                   T + A   L  +R + ++A+ +  ++++P + V   K +T G   WT++++ 
Sbjct: 123 REMIEQGNTVTPANTMLKVLRSVMRFAMERGLISVDPTMGVRMLKHQTSGFHTWTEDEIA 182

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
            F++ W  GS+ RL F+ LLY+  R  D  +  V  +  +  +++  KTG +I +     
Sbjct: 183 MFEAHWPLGSKQRLGFDLLLYTAQRSDDVRQMTVHQIARDRVTVRQGKTGQLIDIPQHPR 242

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISAD 299
               LA + IG          +      F  W K  A KAG+ + SAHG+RK  +   A+
Sbjct: 243 LQASLAASAIGHLVVLTTQHGKMYTPNGFGNWIKDAAVKAGLPHCSAHGLRKAQSRRLAE 302

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
           AG + HE+ A  G +++ + E YT+ A+R  L     +R+ 
Sbjct: 303 AGCSTHEIAAITGHQSLKEIERYTREANRRGLADGAMKRVG 343


>gi|260431275|ref|ZP_05785246.1| phage integrase [Silicibacter lacuscaerulensis ITI-1157]
 gi|260415103|gb|EEX08362.1| phage integrase [Silicibacter lacuscaerulensis ITI-1157]
          Length = 373

 Score =  307 bits (786), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 85/347 (24%), Positives = 158/347 (45%), Gaps = 10/347 (2%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYP-HESTFIPAYMSALTGSTPKREYINSPRKK 67
            +V ++  RHG +  Y+R+ +GR++RL  P     F+  Y +A  G   + +   + R  
Sbjct: 11  KYVVEDVDRHGNVRLYYRR-NGRKVRLRGPAGSPEFLADYRTAAAG-PKEAKTDKAGRVV 68

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK--SGDFDYRKITTKHIRSGVES 125
           P + +WL  +Y KSA +  L   ++    S  ++       GD  + ++  +HIR   + 
Sbjct: 69  PKSFRWLCVQYFKSAMFQELDPRTQKVRRSILERFCEHKGDGDKPFAQLLPRHIRVRRDE 128

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
               P +A   + ++R L+++A+R ++   NP   VE  K   +G   WT  ++++++  
Sbjct: 129 MADRPEAANGMVKAVRQLYRYALRYDHHDDNPAEKVEYLKGNPDGFHSWTLAEIEKYEEA 188

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK----TGTIITVELPDGF 241
              G+  RLA    LY+G R +D    G QH+++        K        + + +    
Sbjct: 189 HPIGTPARLALALALYTGQRRADLVVLGKQHVRDGWLIFTQHKGRNRKPVRMEIPVIPEL 248

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADA 300
            +++  TP G  TF +    +   +  F   F+     AG+   S HG+RK +A   A+ 
Sbjct: 249 QQIIDATPTGDLTFLVTAFNRPFTSNGFGNRFRKWCDDAGLPQCSVHGLRKAAAARLAEL 308

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
           G T  E+M+  G +T  +   YT+ A +        RR+S     ++
Sbjct: 309 GCTEQEIMSITGHRTSKEVTRYTRAASQKTRAESALRRLSREQTPNE 355


>gi|75674473|ref|YP_316894.1| phage integrase [Nitrobacter winogradskyi Nb-255]
 gi|74419343|gb|ABA03542.1| phage integrase [Nitrobacter winogradskyi Nb-255]
          Length = 359

 Score =  306 bits (785), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 95/343 (27%), Positives = 159/343 (46%), Gaps = 8/343 (2%)

Query: 10  FVTKERTRHGKIIYYFRKGHGRRIRLPY-PHESTFIPAYMSALTG--STPKREYINSPRK 66
           +  ++  RHG +  Y R+   +++RL   P    F+  Y  AL G    P  +       
Sbjct: 17  YTYEDTDRHGNVRIYVRRPGMKKVRLRKTPGTPEFLEEYRDALAGRLELPSDKRPVRVPA 76

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
              TL+WL  +Y +SA +  L   ++       D I ++ GD  Y  +  +H+R   + +
Sbjct: 77  GKGTLRWLCEQYYRSAEYKRLEPRTQHVRRLILDSICKRDGDKPYALMEPRHLRRRRDEK 136

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             TP +A   + ++R +F +A+  +    NP   V   K  +EG   W  E+++QF+   
Sbjct: 137 SDTPEAANGIVKALRQVFTFALENDLAQRNPAKDVPYLKSGSEGFHSWNIEEVRQFEERH 196

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----ITVELPDGFM 242
           S GS+ RLA   LLY+G R SD    G QH+++  F+    K        +++ +     
Sbjct: 197 SVGSKARLALALLLYTGQRRSDVVALGRQHIRDGWFTFTQVKNRNRKPVTLSIPVRPELK 256

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAG 301
            ++  TP G  T+ +    +   A  F  WF+ +  +AG+ + SAHG+RK +A   A+ G
Sbjct: 257 AIIDATPSGNLTYLVTAFGKPFTANGFGNWFRERCDEAGLPHCSAHGLRKAAAARLAELG 316

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
           A+  E+MA  G  T  +   YT+GA +  L      R     D
Sbjct: 317 ASESEIMAVTGHTTSKEIVRYTRGARQKVLAANAMARFGENKD 359


>gi|315121974|ref|YP_004062463.1| integrase family protein [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|315122942|ref|YP_004063431.1| integrase family protein [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|313495376|gb|ADR51975.1| integrase family protein [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|313496344|gb|ADR52943.1| integrase family protein [Candidatus Liberibacter solanacearum
           CLso-ZC1]
          Length = 299

 Score =  306 bits (784), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 109/303 (35%), Positives = 169/303 (55%), Gaps = 7/303 (2%)

Query: 44  IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII 103
           +  Y  AL G   ++    S      T KWLI +YR S H+ SL   +R   ++ F QII
Sbjct: 1   METYADALAGRLRQKGDHGS----KGTFKWLIDQYRLSGHFQSLNPTTRRVRDNLFYQII 56

Query: 104 RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163
           + SGD  + KIT +H+++ V+ R   PS AI FL ++  +FKWA   E +  NP + V R
Sbjct: 57  KDSGDIPFAKITRRHLQNAVDRRSSKPSVAISFLKAISPVFKWAETCELITKNPVIGVCR 116

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223
           P  +T G+  WT E ++ ++      +  RLA E +L+ GLR SD  R G QH+++++ S
Sbjct: 117 PPIRTIGMHTWTMEQVEVYRKHHPINTMARLALELMLFLGLRRSDVIRIGKQHVKDSVLS 176

Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ-FSIWFKAKATKAGV 282
           I T+KTG  + V + +   K L    + + TF I    +  +++  F  WF+ +  +AG+
Sbjct: 177 IHTKKTGKQVHVPIFEDLQKCLDAVGVDRGTFLITAIGKPFSSSGSFGNWFRDRCKEAGL 236

Query: 283 --NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
                AHG+RK  ATI+A+AGA+ HELMA +GW   D A+ YT+  +  +L  K ++ I+
Sbjct: 237 PDKCRAHGLRKAGATIAANAGASPHELMAMFGWSKTDMADLYTREVNSKKLAYKAAKMIA 296

Query: 341 SVV 343
             V
Sbjct: 297 DCV 299


>gi|300023048|ref|YP_003755659.1| integrase family protein [Hyphomicrobium denitrificans ATCC 51888]
 gi|299524869|gb|ADJ23338.1| integrase family protein [Hyphomicrobium denitrificans ATCC 51888]
          Length = 411

 Score =  305 bits (782), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 89/354 (25%), Positives = 163/354 (46%), Gaps = 18/354 (5%)

Query: 10  FVTKERTRHGKIIYYFRKGHGRRIRLPY-PHESTFIPAYMSAL---TGSTPKREYINSPR 65
           ++ ++  RHG +  YFR    R+IRL   P    F   Y S +        K     S  
Sbjct: 13  YLVEDTDRHGNVRIYFRYPGYRKIRLRERPTSPEFAERYSSLIEQFATGCYKEAEKTSVS 72

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII---------RKSGDFDYRKITT 116
             P TL WL++ +R S  + +L  +++ +     + ++             +F   +I  
Sbjct: 73  AVPGTLGWLVTAFRASKDFSNLDPSTQRTRARVLESMLNEPIFQEAAETFRNFPLDRIKL 132

Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
             +    + +K  P +A   + ++R +FKWA  +++   NP +S+ +P+  + G   W  
Sbjct: 133 SDLEVLRDRKKALPGAATDRVKALRPMFKWATSKKHCVANPAISLTKPRLISNGHHTWLP 192

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---- 232
           ++++ F+     G++  LA   +LY+G R SD+ + G QH Q +       K        
Sbjct: 193 DEIEAFQRRHPLGTKAHLALSIMLYTGARRSDAVQLGRQHEQGDSLRWTAHKNRNRYPTI 252

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRK 291
           I + +       +   P G   + +    +      F  WF  +  +AG+   SAHG+RK
Sbjct: 253 IHIPMLQPLAAAIQAGPTGDMVYLLTEYGKPFTIAGFGNWFHDRCIEAGLPQCSAHGLRK 312

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345
             +T +A+AGATAH+LMA +GW+++ +AE YT+ A+R ++       +   V +
Sbjct: 313 AGSTRAAEAGATAHQLMAMFGWRSLAEAEIYTRAAERKKMAALGMAFLEKGVQA 366


>gi|312115482|ref|YP_004013078.1| integrase family protein [Rhodomicrobium vannielii ATCC 17100]
 gi|311220611|gb|ADP71979.1| integrase family protein [Rhodomicrobium vannielii ATCC 17100]
          Length = 352

 Score =  305 bits (781), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 87/349 (24%), Positives = 155/349 (44%), Gaps = 8/349 (2%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPY-PHESTFIPAYMSALTGSTPKREYIN 62
             + PP+   +        +YF +    R+R+P  P    F+  Y  A   +  K   I 
Sbjct: 6   KSKAPPYCHWKTNGRNFGCWYFERPGYPRVRVPGLPWTPEFMAVYEKA---TKAKPAEIG 62

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122
           + R  P +L  +I  Y  SA W  LA +++ ++    + +    G      +  +HI+  
Sbjct: 63  ASRTVPRSLGAVIVAYYSSAAWRGLASSTKRTYGGVIEALREAHGGMPIAGLKREHIKKL 122

Query: 123 VESRK--HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
           +E +       +A + L+ + +L   A+    +  NP  +V++ K +  G   WT++++ 
Sbjct: 123 IEKKALEGGACAANRLLSVLGILLDVALDAGLIETNPARTVKKLKHRAIGFHTWTEDEVA 182

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
            F++ W+  ++ RLAFE LL +  R SD  +     +     ++  QKT   + + L   
Sbjct: 183 AFRAHWAIETRQRLAFELLLCTAQRSSDVRQMRTAQIAGGCVALSQQKTHAPLRIPLLPE 242

Query: 241 FMKLLAMTPI-GKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISA 298
               LA  P+ G ET  +    +      F ++ K     AG+ + SAHG+RK +A   A
Sbjct: 243 LQAALAAAPVIGAETALVTQYGRAFTEKGFGLFIKKACVAAGLTHCSAHGLRKAAARRLA 302

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
           +AG T H++ A  G  T+ + E YTK A ++RL       +    D   
Sbjct: 303 EAGCTVHQIAAITGHATLREIERYTKEASQLRLAEAAFATLRGTSDERK 351


>gi|86358521|ref|YP_470413.1| integrase/recombinase protein [Rhizobium etli CFN 42]
 gi|86282623|gb|ABC91686.1| probable integrase/recombinase protein [Rhizobium etli CFN 42]
          Length = 404

 Score =  305 bits (781), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 83/353 (23%), Positives = 152/353 (43%), Gaps = 17/353 (4%)

Query: 10  FVTKERTRHGKIIYYFRKGHGRRIRL-------PYPHESTFIPAYMSALTGSTPKREYIN 62
           +   +    G   YY RK   +++R+              F+ AY +AL           
Sbjct: 8   YCVYDPDPRGNPRYYVRKNGYKKVRIFEKFDDGRGNITEAFMKAYWAALAAMDGGAAPSK 67

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122
               +  T  WL+ +Y +S  +  L V ++    S   +    +G   Y+K   + + + 
Sbjct: 68  KEVPREDTFDWLVDQYYRSNAFKRLEVTTQSDKRSVLARFCMTAGPLPYKKFRQQDVANS 127

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQE--YVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
              RK TP +A + +  +R LF WA++Q+   ++ NP   +++    +EG   WT +++ 
Sbjct: 128 QLKRKETPGAADKLVKVLRALFNWAMKQDPPLISANPATGIKKLNAASEGFHTWTPDEID 187

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----ITVE 236
            ++++   G+  RLA E ++  G R SD+   G QH          +K        I V 
Sbjct: 188 TYRAYHPIGTTARLALEIMINVGARISDAAYIGRQHESGGELRFTARKNRNRKPTVIEVP 247

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSAT 295
           +    +  L  T  G   + +    +           +     AG+   SAHG+RK +A 
Sbjct: 248 MMPDLVDALRHTKTGDFNYLVTEHGRPFTVNGLGNRMREWCDAAGLPQCSAHGLRKAAAV 307

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
           I A++GA+A E+ A +GW  ++ AETY + A + ++      R++   D  +P
Sbjct: 308 IFAESGASAPEMCAVFGWSKLETAETYIRNAQKRKMASNAFARLA---DYRNP 357


>gi|220922490|ref|YP_002497792.1| integrase family protein [Methylobacterium nodulans ORS 2060]
 gi|219947097|gb|ACL57489.1| integrase family protein [Methylobacterium nodulans ORS 2060]
          Length = 346

 Score =  304 bits (778), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 121/346 (34%), Positives = 183/346 (52%), Gaps = 9/346 (2%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPH-ESTFIPAYMSAL-TGSTPKREYINSP 64
            PP + +E TRHGK ++Y R G G+RIR+   +    F   Y  A+ +G  P ++     
Sbjct: 5   RPPHLVREITRHGKPVWYVRVGQGKRIRMRETYGSPEFWRDYRLAVESGQLPAKQAGP-- 62

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
              P TL WLI+ Y  S  W  L+  +R    +    + + +G+   R I  K I +G +
Sbjct: 63  --NPGTLSWLIARYVASPEWADLSRRTRTGRHAILRAVEKTAGNELLRHIDRKAIVTGRD 120

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE--GIRPWTKEDMQQF 182
            R+ TPS+A  FL +MR LF WAV  E++  NP + V+   RK    G   WT+E+++QF
Sbjct: 121 RRRDTPSAANNFLYAMRALFAWAVEHEHIDQNPAVGVKPLARKNADVGFHTWTEEEVRQF 180

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
           ++ W  G+Q RLA + LLY+GLR SD    G QH++ + F+I+T+KTG ++   +     
Sbjct: 181 EARWPVGTQERLALDLLLYTGLRRSDVVVLGRQHVKGDTFTIRTKKTGAVVVRPILPPLA 240

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGA 302
             +A  P G   F + +         F+ WF+    KAGV   +HG+RK +A  +A+AGA
Sbjct: 241 ASIAAAPTGDLAFLVTSRGTPWVDDSFAKWFRRACEKAGVPGRSHGLRKAAARRAAEAGA 300

Query: 303 TAHELMATYGWKTV-DQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
           +  EL A +GW+    ++ TYT+ AD  RL      R       DD
Sbjct: 301 SEMELNALFGWRPGSRESATYTRAADVERLARGALMRNPRAWKGDD 346


>gi|89070660|ref|ZP_01157933.1| phage integrase [Oceanicola granulosus HTCC2516]
 gi|89043740|gb|EAR49943.1| phage integrase [Oceanicola granulosus HTCC2516]
          Length = 375

 Score =  303 bits (777), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 91/348 (26%), Positives = 153/348 (43%), Gaps = 10/348 (2%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYP-HESTFIPAYMSALTGSTPKR-EYINSPRK 66
            +V ++  RHG +  Y+R+ +G + RL  P     F+  Y  A  G    R       R 
Sbjct: 11  KYVVEDVDRHGNVRLYYRR-NGTKTRLRGPVGSPEFLIDYRRAAAGPKEVRGHKARVGRV 69

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK--SGDFDYRKITTKHIRSGVE 124
            P +LKWL  +Y KSA +  L   ++    S  ++       GD  +  +  +HIR   +
Sbjct: 70  VPRSLKWLCVQYYKSAMFTELDPRTQKVRRSILERFCEHKNDGDKPFALLLPRHIRVRRD 129

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
                P +A   + ++R L+++A+R ++   NP   VE  K + +G   WT  ++++F+ 
Sbjct: 130 EMADRPEAANGMVKALRQLYRYALRYDHHDDNPADKVEYLKGEPDGFHSWTLAEIKKFED 189

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK----TGTIITVELPDG 240
               GS  RLA    LY+G R +D    G QH+++        K        + + +   
Sbjct: 190 AHPVGSPARLALALALYTGQRRADLVTLGKQHVRDGWLIFTQHKGRNRKPVRLEIPVIPE 249

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISAD 299
             +++  TP G   F +    +   +  F   F+     AG+ N S HG+RK +A   A+
Sbjct: 250 LQRIIDATPTGDLNFLVTAFNRPFTSNGFGNRFRKWCDDAGLPNCSVHGLRKAAAARLAE 309

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
            G T  E+MA  G  T  +   YT+ A +        RR +   +SD 
Sbjct: 310 LGCTEQEIMAITGHATSKEVTRYTRAASQKTRAESALRRFTEEQNSDK 357


>gi|146340241|ref|YP_001205289.1| putative phage integrase/recombinase [Bradyrhizobium sp. ORS278]
 gi|146193047|emb|CAL77058.1| Putative Phage Integrase/recombinase [Bradyrhizobium sp. ORS278]
          Length = 345

 Score =  301 bits (770), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 109/340 (32%), Positives = 175/340 (51%), Gaps = 7/340 (2%)

Query: 7   LPPFVTKERTRHGKIIYYFR-KGHGRRIRLPYPHES-TFIPAYMSALTGSTPKREYINSP 64
            PP + +  +RHGK+ ++ + +    + R+   + S  F+ AY +A+TG   K       
Sbjct: 8   RPPHLQRGVSRHGKVYWFDQMRRGAPKTRIRGEYGSAEFMAAYDAAVTGGAAKP--TPEI 65

Query: 65  RKKPTTLKWLISEYRKSAHWGS-LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
           +    TL+W    YR+S  W S L+  +R   E+    +++ +       I    I  G+
Sbjct: 66  KAPKGTLEWAWMLYRQSGAWQSGLSQATRRQRENIMKHVLKTAASTPLSDIDAAAIADGI 125

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR-KTEGIRPWTKEDMQQF 182
           + R  TPS A  FL +M   F W  R + V+ NPC   E PKR KT G + W+ +D++ +
Sbjct: 126 DRRAKTPSQAKNFLQTMNQFFAWLKRAKIVSENPCDGAELPKRPKTGGFKKWSLDDVELY 185

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
           +  W  G++ R+  +  +Y+GLR  D+   G QH++N + S++T+K G  + + L D   
Sbjct: 186 EKRWPIGTRERVMLDDYMYTGLRRGDAAVVGKQHVRNGVISLQTEKAGQWVHIPLLDVLK 245

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAG 301
           + L   P+G   +      +          FK     AGV +KSAHG+RK +AT +AD G
Sbjct: 246 RTLEAGPVGDLAWNATKSGRPFAKESLGNAFKDACVAAGVRDKSAHGLRKAAATRAADNG 305

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
           ATAHELMA + W  + +AE YT+ ADR RL  +   ++  
Sbjct: 306 ATAHELMAIFRWVDIKEAELYTRAADRKRLAAQAMGKLEK 345


>gi|148257958|ref|YP_001242543.1| putative phage integrase [Bradyrhizobium sp. BTAi1]
 gi|146410131|gb|ABQ38637.1| putative phage integrase [Bradyrhizobium sp. BTAi1]
          Length = 382

 Score =  300 bits (768), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 103/350 (29%), Positives = 170/350 (48%), Gaps = 11/350 (3%)

Query: 5   LRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPY-PHESTFIPAYMSALTGS-TPKREYIN 62
            RLPP+V +     G     FR+G G RIRLP  P  S F+ AY SAL G  T  R  + 
Sbjct: 3   RRLPPYVERNHV-KGHTYLSFRRGKGARIRLPDDPTSSEFMSAYQSALLGQATSSRPELR 61

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122
           SP     T+  LI+ Y +S+ +  L   S+  +    + +  + G      ++ + I +G
Sbjct: 62  SPVH--GTISALIASYMRSSDYIGLRKTSKEGYGRRLEALRIEHGHRTVAGLSRERIITG 119

Query: 123 V-ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
           + +     P +A+  L  +R+L + A+   ++  +P + ++RPK +   IR WT+++++ 
Sbjct: 120 ILQPFADRPGAALDTLKKLRILIRHAINIGWIKHDPSVGIKRPKLQR--IRSWTEDEIEL 177

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDG 240
           F+  W   ++ RLAFE  L +G R SD  R    H+   N  ++  Q+TG  + + L   
Sbjct: 178 FRKKWPLETKQRLAFELFLNTGQRRSDVVRMAWSHITPENRIAVAQQETGRRLLIPLHRD 237

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISA 298
            +  LA+      +       Q  +   FS W +   T AG+      HG+RK +    A
Sbjct: 238 LLSALAVAKRDHMSIITTAYGQSFSVDGFSQWMRDAITDAGLPLGCQPHGLRKATGRRLA 297

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
           +AGATA  +M+  G  T+ +AE YT+ AD+  L +    R+     +D P
Sbjct: 298 EAGATAKMIMSVLGHTTLAEAERYTEEADQASLAVDAVARLEGHKANDFP 347


>gi|254559696|ref|YP_003066791.1| phage integrase [Methylobacterium extorquens DM4]
 gi|254266974|emb|CAX22774.1| phage integrase [Methylobacterium extorquens DM4]
          Length = 426

 Score =  297 bits (761), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 89/345 (25%), Positives = 155/345 (44%), Gaps = 9/345 (2%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPY-PHESTFIPAYMSALTGSTPKREYINSPRKK 67
            FV  +  RHG + YYFR+    + RL   P    F+  Y   L G  P        R  
Sbjct: 7   KFVVSDVDRHGNVRYYFRRRPDPKTRLRGKPGSKIFMETYDRCLAGDAPAATACAEVR-- 64

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127
           P + + +   Y  S+ +G+L  +++       +      G    R++  +H+R   +SR+
Sbjct: 65  PGSFRSVCERYLGSSAFGALDPSTQAWRRRGLEAACEAHGGKLIRRLLARHVRQMRDSRR 124

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            TP++A   L ++R LF WAV  +    +P   V+R +  ++G   W+  +++ +++   
Sbjct: 125 GTPAAANTLLKALRALFSWAVEHDLAPGDPTREVKRVRYASKGHHSWSLTEVEAYEAVHP 184

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----ITVELPDGFMK 243
            G++ RLA   LLY+  R  D  R G +H+          K        + + +     +
Sbjct: 185 LGTKARLALALLLYTAGRREDVVRLGPRHVSAGRMRYVQAKNEHRAPVAMDIPIHPDLAE 244

Query: 244 LLA-MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAG 301
            +A + P    +F   +  +  +   F   FK    +A + + SAHG RK +A   A+ G
Sbjct: 245 AIASVPPSSCPSFLETDYGRSFSPNGFGNRFKEWCIQAALPHCSAHGCRKATAARLAERG 304

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346
           AT H++MA  G +T+++ E YT+ A R RL       +     SD
Sbjct: 305 ATPHQIMAITGHRTLEEVERYTREAQRARLADDAMALLPRRSGSD 349


>gi|326385719|ref|ZP_08207348.1| integrase family protein [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326209698|gb|EGD60486.1| integrase family protein [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 359

 Score =  296 bits (758), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 78/335 (23%), Positives = 145/335 (43%), Gaps = 2/335 (0%)

Query: 7   LPPFVTKERTRHGKIIYYFRK-GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
           LP +V+  R RHGK  Y FR+ G  + +    P    F   Y + LT S   +    + +
Sbjct: 6   LPKWVSGFRDRHGKARYRFRRKGQAQYLFKHAPGTEEFRQEYQACLTASEAPKIQPGADK 65

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
            KP T   LI  Y +S  +   +  +++ +    ++   K G      + T+H+ + +  
Sbjct: 66  IKPGTFDDLIVRYYRSPDFLDPSPRTQVVYRGVIERWRAKYGSGRVADLETRHVAAMMAE 125

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
                +SA      +  L  +A RQ  +  NP L+ +  +    G   WT+ ++  +++ 
Sbjct: 126 MLPHRTSANMLRKRLSALMAFANRQGEIDKNPVLATKPYRIDGGGFHTWTEPEIALYEAH 185

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
              G+  RL F+ LL++G R  D    G   +Q+    I  +KT   +++ +     + +
Sbjct: 186 HPTGTMARLMFDLLLWTGQRGGDVRLLGPNAIQDKRLVITQEKTKVTVSLPILPALAQSI 245

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATA 304
             T  G++TF +    +      F   F+     AG+ + SAHG+RK +A   A+A  + 
Sbjct: 246 LATQTGEDTFLVTTHGKTFTRKGFGNKFRDWCDAAGLPHCSAHGLRKAAARRFAEARCSN 305

Query: 305 HELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
            ++ A  G  T  +   YT   D+  +    +  +
Sbjct: 306 QQIKAWTGHTTDSEIARYTAAVDQQLMSDAAAEML 340


>gi|218528998|ref|YP_002419814.1| integrase family protein [Methylobacterium chloromethanicum CM4]
 gi|218521301|gb|ACK81886.1| integrase family protein [Methylobacterium chloromethanicum CM4]
          Length = 426

 Score =  295 bits (756), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 89/345 (25%), Positives = 155/345 (44%), Gaps = 9/345 (2%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPY-PHESTFIPAYMSALTGSTPKREYINSPRKK 67
            FV  +  RHG + YYFR+    + RL   P    F+  Y   L G  P        R  
Sbjct: 7   KFVVSDVDRHGNVRYYFRRRPDPKTRLRGKPGSKIFMETYDRCLAGDAPAATACAEVR-- 64

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127
           P + + +   Y  S+ +G+L  +++       +      G    R++  +H+R   +SR+
Sbjct: 65  PGSFRSVCERYLGSSAFGALDPSTQAWRRRGLEAACEAHGGKLIRRLLARHVRQMRDSRR 124

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            TP++A   L ++R LF WAV  +    +P   V+R +  ++G   W+  +++ +++   
Sbjct: 125 GTPAAANTLLKALRALFSWAVEHDLAPGDPTREVKRVRYASKGHHSWSLTEVKAYEAVHP 184

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----ITVELPDGFMK 243
            G++ RLA   LLY+  R  D  R G +H+          K        + + +     +
Sbjct: 185 LGTKARLALALLLYTAGRREDVVRLGPRHVSAGRMRYVQAKNEHRAPVAMDIPIHPDLAE 244

Query: 244 LLA-MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAG 301
            +A + P    +F   +  +  +   F   FK    +A + + SAHG RK +A   A+ G
Sbjct: 245 AIASVPPSSGPSFLETDYGRSFSPNGFGNRFKEWCIQAALPHCSAHGCRKATAARLAERG 304

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346
           AT H++MA  G +T+++ E YT+ A R RL       +     SD
Sbjct: 305 ATPHQIMAITGHRTLEEVERYTREAQRARLADDAMALLPRRSGSD 349


>gi|58040908|ref|YP_192872.1| Phage related integrase [Gluconobacter oxydans 621H]
 gi|58003322|gb|AAW62216.1| Phage related integrase [Gluconobacter oxydans 621H]
          Length = 332

 Score =  294 bits (753), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 93/329 (28%), Positives = 155/329 (47%), Gaps = 6/329 (1%)

Query: 22  IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKS 81
             YFR     R  LP   +  F PAY +A+            P +   T   L  ++ KS
Sbjct: 2   RVYFRHPRLPRQVLPPVDDPAFWPAYHAAIAQIPKDEP---RPIRGTGTFARLCEDWLKS 58

Query: 82  AHWGSLAVNSRISFESY-FDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSM 140
             + SL  ++++   +     +      F       KHIR+ +      P+S  ++L   
Sbjct: 59  NSFLSLKPSTQVGHRNIVLRMMREDFATFHVSDFEPKHIRAIINRFSDRPASGNRWLRIF 118

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200
            +LF+ A+ Q+ + ++P   V R K + EG RPWT+ ++ QF++ W  GS+ R AF  LL
Sbjct: 119 GILFRLAIEQDLIQVDPARDVRRLKERAEGARPWTEVEVAQFQAHWPLGSRARTAFALLL 178

Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINND 260
           Y+G R SD  + G   +++ + ++  QKTGT + V +       LA T   K  +     
Sbjct: 179 YTGQRRSDVVKIGPACIKDGMIAVTQQKTGTSLMVPILKDLALALAATLGVKAYYLEVVP 238

Query: 261 KQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
            +K ++       K     AG+  + SAHG+RK +A   A+AG T H++ A  G KT+ +
Sbjct: 239 GRKPSSDSLGNLMKDWTLAAGLPSDLSAHGLRKTAARRLAEAGCTTHQIAAITGHKTLAE 298

Query: 319 AETYTKGADRIRLGIKNSRRISSVVDSDD 347
            E YT+  D+ RL  +    + +V  + +
Sbjct: 299 VERYTRSVDQKRLAKQAVALLEAVKPNSE 327


>gi|220927097|ref|YP_002502399.1| integrase family protein [Methylobacterium nodulans ORS 2060]
 gi|219951704|gb|ACL62096.1| integrase family protein [Methylobacterium nodulans ORS 2060]
          Length = 344

 Score =  294 bits (752), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 111/335 (33%), Positives = 175/335 (52%), Gaps = 14/335 (4%)

Query: 5   LRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPH-ESTFIPAYMSALTGSTPKREYINS 63
              PP + +E TRHG+ ++Y R G G+RIR+  P+    F   Y  A+ G+ P      +
Sbjct: 3   RSRPPHLVREVTRHGRPVWYVRVGQGKRIRMREPYGSPEFWRDYRLAVEGTPPPAGKGPA 62

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
           P     TL WL+++Y +SA W   +  +R    + +  I + +G    + I  + I +G 
Sbjct: 63  PG----TLSWLLAKYVESAEWSDFSAATRKQRHAIYRAIEKTAGHEPIKLIDRRAILNGR 118

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE--GIRPWTKEDMQQ 181
           + R+  P +A  F+ +MR LF WAV + YVA +P   V+    + +  G   WT+E++ +
Sbjct: 119 DRRRDRPHAANVFIKAMRALFSWAVDRGYVATDPTAGVKMLAGENDDVGFHTWTEEELAR 178

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241
           F++ W  G++ RLAF+ LLY+GLR  D+ R G QH++ + FSI+T      +T  +    
Sbjct: 179 FEARWPLGTRERLAFDILLYTGLRRGDAVRLGRQHVKGDAFSIRT------VTRPILPQL 232

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAG 301
              +A T  G   F +  D        F  WF+     A V  SAHG+RK  A  +A+AG
Sbjct: 233 AASIAATKTGDLAFIVRMDGHPFVKEGFGNWFREACRAAKVPGSAHGLRKAGARRAAEAG 292

Query: 302 ATAHELMATYGWKTV-DQAETYTKGADRIRLGIKN 335
           AT  +L A +GW+    ++ TYT+ AD  RL  + 
Sbjct: 293 ATEMQLNALFGWRPGSRESATYTRTADNARLAREA 327


>gi|85716138|ref|ZP_01047113.1| Integrase /recombinase [Nitrobacter sp. Nb-311A]
 gi|85696971|gb|EAQ34854.1| Integrase /recombinase [Nitrobacter sp. Nb-311A]
          Length = 316

 Score =  293 bits (750), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 98/299 (32%), Positives = 159/299 (53%), Gaps = 5/299 (1%)

Query: 44  IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII 103
           + AY +AL G  P+ +          TL+WL + YR+S+ W  L+  +R   E+    ++
Sbjct: 1   MEAYHAALAGERPQPK----SEAARGTLEWLWTLYRQSSAWADLSAATRKQRENIMKHVL 56

Query: 104 RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163
           + +G      IT   I +G + R  TPS A  F++++R LF WA+    V  +P   V+R
Sbjct: 57  KSAGHQPLSHITRASIVAGRDRRAKTPSQAKNFISTVRGLFGWALDANLVNSDPTAGVKR 116

Query: 164 PKRK-TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222
           PKRK +EG + WT++D+++F+  W+ G++ R+ F+  L++GLR  D+ + G QH+++   
Sbjct: 117 PKRKRSEGFQVWTEDDIEKFQKRWNRGTRERVMFDLFLFTGLRRGDAAQVGKQHVKDGSI 176

Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
           SI T+KTG  +T+ +       L   P+G   F        M        F+     AG+
Sbjct: 177 SINTEKTGIRVTIPIQPELQATLDAGPVGDLAFIATAAGVPMTKESLGNAFRDACRSAGI 236

Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
            KSAHG+RK +AT +A+ GAT  EL A +GW     A  YT+  +R  L    + ++S 
Sbjct: 237 TKSAHGLRKAAATNAANRGATERELEALFGWVGGQMASLYTRSVNREALSKGAAAKMSR 295


>gi|146343024|ref|YP_001208072.1| putative phage integrase/recombinase [Bradyrhizobium sp. ORS278]
 gi|146195830|emb|CAL79857.1| Putative phage integrase/recombinase [Bradyrhizobium sp. ORS278]
          Length = 429

 Score =  287 bits (734), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 106/371 (28%), Positives = 173/371 (46%), Gaps = 30/371 (8%)

Query: 7   LPPFVTKERTRHGKIIYYFRKG--HGRRIRLPYPHES-TFIPAYMSALTGSTPKREYINS 63
             P++ KE  RHG+ ++Y R     G+R R+   + S  F   Y  AL G   +      
Sbjct: 9   RKPYLHKEINRHGRTVWYVRNKDVGGKRTRIRGEYGSTEFNRNYDIALAGMFNRPRLAID 68

Query: 64  PRKK-----PTTLKWLISEYR-KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK 117
           P +        +LKWL  EY+ K+  W  +  ++     S    ++  +G+     I  +
Sbjct: 69  PSEARAKVFDGSLKWLWEEYKAKAPDWREMKASTHKQRNSLMIHVLEANGNKRAAAIQKQ 128

Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK-RKTEGIRPWTK 176
           HI  G+  R   PS+A  FLT+MR +F WAV Q+ +A++P   ++ PK  KTEG   W+ 
Sbjct: 129 HILDGLGRRAQNPSAARHFLTTMRRMFIWAVAQKILAVDPTEGIKTPKPAKTEGFVTWSD 188

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN---------------- 220
            D++++   W  G++ R+  +  L++G R  D+   G   +                   
Sbjct: 189 ADVRRYYKRWPLGTRERVMIDVYLFTGFRRGDAASFGPADVTEQVQERIGPDGKLEQISV 248

Query: 221 -IFSIKTQKTGTIITV--ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKA 277
            I + + +K    I V   + D   + L   P+G ET+      + M        FK K 
Sbjct: 249 PIITKRLEKGSETIEVTFPMLDVLRRTLEAGPVGTETYIATRQGKPMTKESLGNVFKEKC 308

Query: 278 TKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
             AG+ N+SAHG+RK +AT++A+ GAT  EL A +GW     A  YT+ A+R +L     
Sbjct: 309 VAAGLANRSAHGLRKAAATVAAENGATEAELDAIFGWTDRRMASHYTRNANRKKLAYGGV 368

Query: 337 RRISSVVDSDD 347
            ++   + S+D
Sbjct: 369 AKLERKIGSED 379


>gi|299134375|ref|ZP_07027568.1| integrase family protein [Afipia sp. 1NLS2]
 gi|298591122|gb|EFI51324.1| integrase family protein [Afipia sp. 1NLS2]
          Length = 383

 Score =  285 bits (728), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 88/348 (25%), Positives = 148/348 (42%), Gaps = 18/348 (5%)

Query: 10  FVTKERTRHGKIIYYFR--KGHGRRIRLP-------YPHESTFIPAYMSALTGSTPKREY 60
           +   +    G   YY R  +   ++IR+              F+ AY+ AL  S  K   
Sbjct: 8   YCVYDPDTAGNPRYYVRNLRKSSKKIRIRESFEAPDGTITPEFMKAYLDALA-SLDKETS 66

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHI 119
                 +  T  WL  +Y +SA +      ++       ++     +GD  Y       +
Sbjct: 67  SAPKASREKTFSWLCDQYYRSAEFQRFDRLTQADKRGVLNRFCAAGAGDLPYAAFRQADV 126

Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
               + R  TP +A + +  +R LFKWA+++   ++NP + VE+   + EG   WT +++
Sbjct: 127 ERSRDKRAGTPGAADKLVKYLRALFKWAIKKRLASVNPAIGVEKI-NEGEGWHAWTPDEV 185

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-----KTQKTGTIIT 234
             ++   S G++ RLA E +L  G R SD+CR G QH  N          + +K+   I 
Sbjct: 186 ATYRKHHSIGTKARLALELMLNVGARISDACRIGRQHESNGWLKFVAWKNRNKKSRKTIE 245

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFS 293
             +       +  T  G  T+ IN+  +           +     A +   S+HG+RK +
Sbjct: 246 CPITLELRAAIDATETGDLTYLINDLGKAFTIDGLGNKMRDWCDAADLPQCSSHGLRKAA 305

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
           A I A+ GATA EL A +GW  ++ AETY + A    +      R+  
Sbjct: 306 AVILAENGATAPELCAIFGWSKLETAETYIRQAQSRIMVSNAFSRLDE 353


>gi|146340556|ref|YP_001205604.1| putative phage integrase [Bradyrhizobium sp. ORS278]
 gi|146193362|emb|CAL77378.1| putative phage integrase [Bradyrhizobium sp. ORS278]
          Length = 358

 Score =  282 bits (721), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 97/347 (27%), Positives = 163/347 (46%), Gaps = 8/347 (2%)

Query: 5   LRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64
            RLPP V +     G + Y +R G G R++LP P    F  AY +A+ G+   R      
Sbjct: 4   RRLPPNVERNVV-KGHVYYAYRIGKGPRVKLPDPSSEEFGAAYQAAIQGAAQTRP--APS 60

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
           +  P +L  LI+ Y  S  + SL  +S+  +    + +    G      +T + I + + 
Sbjct: 61  QDAPQSLGALIASYYDSDEFRSLRASSKEGYRRRLELMRAAHGHRSVGGLTRERIEAKIL 120

Query: 125 S-RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
               + P + +  L  +R+L + A   +++ +NP   ++R K  ++ IR WT  ++  F+
Sbjct: 121 KPLSNKPGARLDTLKKLRILIRHAKALKWLKVNPSEGIKRGK--SKEIRGWTDNELAAFE 178

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
           + W  G++ R A+E +L  G   +D+         N +F    +KT   + V+  D   +
Sbjct: 179 ARWPFGTRQRAAYEMMLNVGTARADTHLTTWTQADNEVFEYTRRKTDVAVLVQQADSLCQ 238

Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG--VNKSAHGVRKFSATISADAG 301
            LA  P    T  +    +  +   FS W +   T AG  ++   HG+RK    + ADAG
Sbjct: 239 ALAALPRRHVTILVTEWGKPFSVDGFSGWMRDAMTAAGLPLDCKPHGLRKTLGRMLADAG 298

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
           ATAHE+MA  G  T+ +AE YT+ ADR R G +   ++     +  P
Sbjct: 299 ATAHEIMAALGHMTLAEAERYTREADRRRGGKRAIVKLEDHKANRIP 345


>gi|254559697|ref|YP_003066792.1| phage integrase [Methylobacterium extorquens DM4]
 gi|254266975|emb|CAX22775.1| phage integrase [Methylobacterium extorquens DM4]
          Length = 320

 Score =  281 bits (720), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 80/316 (25%), Positives = 139/316 (43%), Gaps = 12/316 (3%)

Query: 44  IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII 103
           +  Y   L G  P+R+  + P   P +   L   Y  S  + SL V++R       D+I 
Sbjct: 1   MNKYYDCLDGKIPERKSRSVP-AAPGSFAALRLAYLGSPEFKSLDVSTRAWQRRALDEIS 59

Query: 104 RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163
              G      +  +H+R+    ++ TP++A   L +++ LFKWA      + +P  +V+ 
Sbjct: 60  EAHGTKRVAMMQARHVRTLRNGKRETPAAANTMLKALKALFKWANENGRASSDPTRNVDF 119

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223
            K   +G  PW+  +++ +++    G+  RLA E LLY+  R  D  R G  +L    F 
Sbjct: 120 LKYAKKGFHPWSPSEVEAYEAAHLVGTTARLALELLLYTAGRREDVVRFGPHNLAAGRFR 179

Query: 224 IKTQKTGTI----ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK 279
               K        I + +     + +A        F + +  +      F   FK    +
Sbjct: 180 FVQGKNEDRAPVLIDIPVHPDLAEAIAAAQPSGAVFILTHYGRPFTPNGFGNRFKKWCIQ 239

Query: 280 AGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS-- 336
           AG+ + SAHG RK +A   A  GATAH++M+  G +++ + E YT+ A R ++       
Sbjct: 240 AGLPHCSAHGCRKAAAARLATRGATAHQIMSVTGHQSLAEVERYTRSALRAQMADTAMAL 299

Query: 337 ----RRISSVVDSDDP 348
               R   S + ++ P
Sbjct: 300 LPDRRSAGSTIPANRP 315


>gi|260433594|ref|ZP_05787565.1| phage integrase family protein [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260417422|gb|EEX10681.1| phage integrase family protein [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 374

 Score =  279 bits (714), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 74/330 (22%), Positives = 132/330 (40%), Gaps = 8/330 (2%)

Query: 16  TRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75
            RHG   + +R                F   Y +AL     +++   + R  P T   L+
Sbjct: 17  DRHGNRRWRYRCKGFSAELGTDYGSDEFERRYQAALN-HQKEKQANGAGRSVPGTFDDLV 75

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQ 135
           + + +   +  L   ++  + +  + + R+ G      +  +H+         TP+ A +
Sbjct: 76  ARFYQ-LKFPELEEITKRDYRAVIEPLRRQHGHKRVAGMRQRHVLEIKAQLSSTPAQANK 134

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195
            L  +  L K AV+ E+ + NP   VE  +  + G   WT++++ +F +    GS   LA
Sbjct: 135 TLKRLSQLMKLAVQLEWRSDNPVSGVEFYQTGSSGYHTWTEDEIARFYAKHERGSLAYLA 194

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-----GTIITVELPDGFMKLLAMTPI 250
              +LY+G    D+   G  +++      +  KT     G  + + +       L   P 
Sbjct: 195 MTLMLYTGASRKDAVALGRGNIRGGRLIYRRSKTRKNPNGIEVNIPVHPTLADALETVPE 254

Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMA 309
           G  TF   N KQ  +        +    KAG+   S+HG+RK      A+AG T  E+M+
Sbjct: 255 GAFTFLETNRKQARSPNGLGNDMREWCDKAGLPMCSSHGLRKAICRRIAEAGGTPFEIMS 314

Query: 310 TYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
             G  T+  A+ Y +   R  L      R+
Sbjct: 315 VSGHITLAMAQHYCEAFGRKNLADSAVHRL 344


>gi|146276197|ref|YP_001166356.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17025]
 gi|145554438|gb|ABP69051.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17025]
          Length = 375

 Score =  277 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 93/342 (27%), Positives = 148/342 (43%), Gaps = 7/342 (2%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
           P VTK   RHGK+ + FRK     + LP P+ S       +                   
Sbjct: 16  PGVTKVVDRHGKVRWRFRKKDRADVYLPGPYASAAFR--AAYEAAVAGAATPAARSTAAY 73

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128
            +L WLI  Y  S  + +L+   R       D +   +G   + ++ T+H+ + + ++K 
Sbjct: 74  GSLAWLIETYLTSPRFQNLSETRRKRLRPDLDWLRENAGKLPFNRLATRHVEA-LMAKKA 132

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            P +A     ++ +LF +A++ E      NP    +R K   +G   WT  ++ QF ++ 
Sbjct: 133 GPWAANMIKKALSLLFNYAIKNEICDQKHNPATLADRRKVNPDGWHAWTSAEIAQFLAYH 192

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
            EG+  RLA   +L +G    D  R G Q++       + +K+  I   E+       L 
Sbjct: 193 GEGTPQRLACLLILNTGAARGDLIRLGWQNVNGGRIRYRRRKSEVIGDYEILPELAAELR 252

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAH 305
             P  +  F + N  +      F+ WFK     AG+ + SAHGVRK  AT  AD+G +  
Sbjct: 253 HVPPAQMLFLMLN-GRPFKPDSFTDWFKRACVAAGLPHCSAHGVRKGQATNIADSGGSEW 311

Query: 306 ELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
           E+M+     T  +A TYTK A+R RL      R+S       
Sbjct: 312 EVMSFLAHATPHEAATYTKKANRGRLADSGLGRLSGAKAEQK 353


>gi|146276881|ref|YP_001167040.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17025]
 gi|145555122|gb|ABP69735.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17025]
          Length = 362

 Score =  276 bits (706), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 86/339 (25%), Positives = 151/339 (44%), Gaps = 14/339 (4%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHE-STFIPAYMSALTGSTPKREYINSPRKK 67
           P+V +  T  G+I + F K  G R  LP P   + F+ AY +AL  +   R    +    
Sbjct: 9   PYV-RPNTVKGRIYWKFEK-DGFRCNLPGPWGFAEFVAAYEAALNHAKAPR----ASTAI 62

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127
             TL WLI +Y  S  + +L+ + + +     D +  ++G + + ++  +H+   + ++K
Sbjct: 63  EGTLSWLIEQYLGSLRFQNLSDSRKRTIRHELDWLREQAGRYHFARLEVRHVEK-LMTKK 121

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             P++A     +M +L  +A ++  Y   NP    E+ K   +G   W +E++++F    
Sbjct: 122 AGPTAANTVKKNMSMLCNFASKKLGYKGPNPAKFAEKLKTNPDGYHTWNEEEVERFLDRH 181

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
             G++ RL     L +G+   D  R G QH++    + +  KT     + +       L 
Sbjct: 182 GPGTKARLVILLALNTGMARQDLARVGRQHVKAGRIAYRRGKTSVAADLPILPELAVELE 241

Query: 247 MTPI---GKETFFINNDKQK--MNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAG 301
                    +  FI  DK+           WF+ +  +A V  + HG+RK  AT  ADAG
Sbjct: 242 AALANWSDGQMLFITQDKRPVGYTPESLGNWFRDRCAEANVPGALHGLRKAGATRLADAG 301

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
           AT  E+ +    K    A  Y K A+R RL      +++
Sbjct: 302 ATEWEIASYLAHKDTKTAAIYVKKANRARLADSGFAKLT 340


>gi|312114649|ref|YP_004012245.1| integrase family protein [Rhodomicrobium vannielii ATCC 17100]
 gi|311219778|gb|ADP71146.1| integrase family protein [Rhodomicrobium vannielii ATCC 17100]
          Length = 312

 Score =  268 bits (685), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 85/310 (27%), Positives = 142/310 (45%), Gaps = 7/310 (2%)

Query: 3   PSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYP-HESTFIPAYMSALTGSTPKREYI 61
           P+ +   +V +++ R+GK   Y+ +    R+ L  P     F+  Y +A    T   E  
Sbjct: 4   PAQQSFKYVRRKKGRNGKEHLYYEEPGKERVALRGPIGSPAFLADYNAA----TEAEELP 59

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121
             PR    +L  L++ Y+ S  + +LA +++        ++    GD D R +    I  
Sbjct: 60  KRPRAAAYSLTALVAAYQGSQRFRALAPSTQAVRRRIMSRLAAVYGDGDIRSMKRGDIVR 119

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
             E     P  A   L   + L K A+   +   NP   + RP+ KT+G   WT+ ++  
Sbjct: 120 MTEKLASGPEGARSLLKLTQQLVKLAIDLGWRDDNPVRDISRPRIKTDGRHCWTEAEIAA 179

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241
           ++  W  G++ RLA E LL +G R  D  R   +H++     +  +KT   +   +    
Sbjct: 180 YRKRWDVGTRQRLALELLLQTGQRKGDVVRLSREHVKGGRLKLTQEKTHVCVDAAIKPEL 239

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISAD 299
           +K++A T  G +T  ++          F   F+A   +AG+    SAHG+RK  A   A+
Sbjct: 240 LKIIAATVTGVQTLLVSTKGTPYGTKAFCGVFRAWCDEAGLPPECSAHGLRKAFARRMAE 299

Query: 300 AGATAHELMA 309
           AGATAHE+MA
Sbjct: 300 AGATAHEIMA 309


>gi|83945755|ref|ZP_00958099.1| phage integrase [Oceanicaulis alexandrii HTCC2633]
 gi|83850845|gb|EAP88706.1| phage integrase [Oceanicaulis alexandrii HTCC2633]
          Length = 310

 Score =  268 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 82/303 (27%), Positives = 139/303 (45%), Gaps = 8/303 (2%)

Query: 44  IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII 103
           + AY  AL  +TP    +     +  T+  LI +Y  S+ + +L  +++ ++ S  +   
Sbjct: 1   MAAYAQALA-NTPLETDLAKSTARKGTIDRLIEDYYHSSAFDTLETSTQRTYRSSLEPFR 59

Query: 104 RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163
              G    R + T+H+   +   +  P++A + L  ++ +F  AVRQE    NP   ++ 
Sbjct: 60  NTYGHMPVRTVQTRHLERILFDLREKPTAANKLLKRLKTIFDLAVRQEIRHDNPAKPIKA 119

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN---- 219
            K  ++G   WT+ +++ FK+ +  GS+PRLA   LL +G R SD  R G Q + +    
Sbjct: 120 RKVDSDGFHAWTEAEIEAFKTAYPSGSKPRLALALLLCTGQRGSDVARMGPQDIVDIQGG 179

Query: 220 -NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKAT 278
                +K QKT T + + +       LA        F      +  +   F  WF  +A 
Sbjct: 180 SRAIRVKQQKTKTPLLIPILPELAVELAARNGKHMVFLTTEYGKAFSVKGFQQWFAERAK 239

Query: 279 KA--GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
            A      +AHG+RK  A   A+AGAT H + +  G KT+ +   YT G D+ +L     
Sbjct: 240 AATGNPKCTAHGLRKACAYRLAEAGATVHMIQSITGHKTLAEVARYTAGRDQFKLASAAQ 299

Query: 337 RRI 339
             +
Sbjct: 300 ALL 302


>gi|126737075|ref|ZP_01752810.1| Integrase [Roseobacter sp. SK209-2-6]
 gi|126721660|gb|EBA18363.1| Integrase [Roseobacter sp. SK209-2-6]
          Length = 332

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 83/332 (25%), Positives = 141/332 (42%), Gaps = 16/332 (4%)

Query: 8   PPFVTKERTRHGKIIYYFRKGHGRRIRLPY-PHESTFIPAYMSALTGSTPKREYINSPRK 66
             F T +R   G++  YFRK  GR +RLP  P+   +   Y   + G     +       
Sbjct: 4   KKFTTTKRV-KGRLYQYFRK-DGRYVRLPDDPNSEEYDREYWRLMRGGGALSQRF----- 56

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
              T + LI  Y++S  W  LA  ++  +    + +    G  D  K+    I     + 
Sbjct: 57  ---TFEKLIQSYKRSPRWEGLAPRTKADYSKVLEYLAGTIGQKDPTKMRRSTIIEAQMAN 113

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
           KH    A      + +LF+ AV  ++   NP   +E+ K   EG +PW K  +  F+   
Sbjct: 114 KHRARFANYIPHMLSILFEHAVDLDWQRDNPAKGIEKIKT-GEGHKPWPKPAVATFRKN- 171

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
                 RLAFE  L +G R SD  R     ++++   +   KTG  + +   D    +L 
Sbjct: 172 -VRGLERLAFELALGTGQRASDLTRMKWSDIEDDGIWVTQGKTGVRLWIPFTDSLRAILD 230

Query: 247 MTPIGKETFFINND-KQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATA 304
            TP     + +++D  +++        F     + G+     HG+R  +A   A+AG T 
Sbjct: 231 ETPRKSLHWILSDDFGRQLGYDYIQKKFLKARKELGLEGYGFHGLRYSAAGELAEAGCTD 290

Query: 305 HELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
           H++ A  G K++   + Y+K A++ RL  +  
Sbjct: 291 HQIAAITGHKSLSMIQKYSKSANQKRLAQQAQ 322


>gi|92118356|ref|YP_578085.1| phage integrase [Nitrobacter hamburgensis X14]
 gi|91801250|gb|ABE63625.1| phage integrase [Nitrobacter hamburgensis X14]
          Length = 359

 Score =  263 bits (673), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 90/348 (25%), Positives = 154/348 (44%), Gaps = 10/348 (2%)

Query: 5   LRLPPFVTKERTRHGKIIYYFRKGHGRRIRLP-YPHESTFIPAYMSALTGSTPKREYINS 63
            +LPP V +     G +   FR G G RI+LP  P+   F  AY  A+       +    
Sbjct: 4   RKLPPNVERNVV-KGHVYLSFRVGKGPRIKLPPDPNSDEFRAAYAEAI---GKTSQAPTP 59

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
            +    ++  LI  Y  S  + +L   S+  + S  DQ+ ++ G      +T + I++ +
Sbjct: 60  AKAAERSIGALIIRYLSSTAFKALRNTSKQGYRSRIDQMRKEHGHRSVSGLTKERIQTQI 119

Query: 124 -ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
            +    TP +A+  L  +R+L + A   E++  +P   ++RPK  ++ IR WT  +   F
Sbjct: 120 LDPLADTPGAALDTLKKLRILIRHARDIEWLNTDPSDGIKRPK--SKEIRSWTDSECTAF 177

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
           +  W  G++ R A+E +L  G   +D  R        + F    QKTG  + + +     
Sbjct: 178 EKRWKVGTRQRAAYELMLNVGTARADVHRVTWNQFDEDNFEYSRQKTGVEVAMTMAKRCR 237

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG--VNKSAHGVRKFSATISADA 300
             +   P    T       +      FS + +     AG  ++   HG+RK      AD 
Sbjct: 238 DAVYALPRKHITVLNTEFGKPFTVDGFSGFMRDAIKAAGLPLDCRPHGLRKTLGRRLADR 297

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
           G +AH++MA  G  T+ +AE YT+ ADR R G +  + +    ++  P
Sbjct: 298 GVSAHDIMAALGHTTLGEAERYTREADRRRGGRRAGKALDDQTENKTP 345


>gi|307944703|ref|ZP_07660042.1| putative integrase family protein [Roseibium sp. TrichSKD4]
 gi|307772130|gb|EFO31352.1| putative integrase family protein [Roseibium sp. TrichSKD4]
          Length = 392

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 88/348 (25%), Positives = 159/348 (45%), Gaps = 22/348 (6%)

Query: 1   MTPSLRLPPFVTKERTRHGKIIYYFR-KGHGRRIRLPYP-HESTFIPAYMS----ALTGS 54
           +TP      ++  E  R    +YY + +  GR +R+  P   S F P Y      AL+  
Sbjct: 42  VTPHANKAKYLL-EMPRKSGPVYYVQTRKGGRALRIQSPADSSEFWPEYGRLVGRALSDP 100

Query: 55  TPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI 114
            P        R K   +  LI+ YR+S  + SL  N++ ++    ++I    G  ++R +
Sbjct: 101 GPISPTTACGRHK---IAQLINAYRQSRDFTSLKPNTQKTYSCALNKIADLFGIREFRTL 157

Query: 115 TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
           + + IR  +++      +A QFL  +R L  W  ++ Y    P   ++   +   G   W
Sbjct: 158 SRQDIRLAMDNMPI--YAANQFLQQIRQLNDWCDQRGYTDTFPAAGIKSHGKSRTGFPAW 215

Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234
           ++E++  + +    G+Q RL  + L ++G+R  D  R G  H+++   +I  QK G  +T
Sbjct: 216 SQEEVDTYLTAHPIGTQARLMIDLLRFTGMRVGDIIRLGPDHIRDGFIAITLQKNGVPVT 275

Query: 235 VELPDGFMKLLAM-TPIGKETFFINNDKQK--MNATQFSIWFKAKATKAGVNKSA----- 286
           + L       +   TP G +TF   +  ++   ++  F+  F+A    AG+  +A     
Sbjct: 276 IPLNPDLEVSIDATTPDGAKTFLTLDRFKRAFSSSKYFAQTFRAHCRAAGLEGTAARRAV 335

Query: 287 --HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
             HG+RKF+     + G T  E  A +GW+     + Y++  DR R+G
Sbjct: 336 SGHGLRKFALISVLENGGTIREAQALFGWRDAAMVQHYSEELDRERVG 383


>gi|222148446|ref|YP_002549403.1| phage-related integrase [Agrobacterium vitis S4]
 gi|221735434|gb|ACM36397.1| phage-related integrase [Agrobacterium vitis S4]
          Length = 343

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 77/336 (22%), Positives = 145/336 (43%), Gaps = 16/336 (4%)

Query: 19  GKIIYYFRKGHGRRIRLP---YPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75
           G + Y  R     + R+     P +  F   Y  A  G  P      S   KP ++ WL+
Sbjct: 4   GNVRYRVRVIGNPKQRIRIFCLPGDEDFSRQYTLARYGEQPVPLKKASEVVKPRSIGWLV 63

Query: 76  SEYRKSAH----WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
             Y +           +  +     +   ++I          I    +    +    TP+
Sbjct: 64  HSYFEYMEQRVKARLSSAKTLKKKRNLLARLIED--PDRIMIIPQPKLIEMQDKMASTPA 121

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
            A  F+ S+ V+++WA+++ ++  NP   ++R  +K +G  PW   D+++F ++   GS+
Sbjct: 122 QADAFIESISVMYEWAIKRGHLKTNPAKGIDRIYKKGDGATPWKSADVKRFFAYHKPGSK 181

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQH--LQNNIFSIKT---QKTGTIITVELPDGFMKLLA 246
           P +A   LL++G R  D    G +H  + + + +++    +K  + +T+ L       + 
Sbjct: 182 PFIAMSILLWTGCRIEDLTFLGPRHECILDGLEALRWVPAKKGSSEVTIPLLKPLKAAIH 241

Query: 247 MTPIGKETFFINNDKQKM-NATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATA 304
              +  ET+ +    +   +    S  FK     AG+N  SAHGVRK  A + A+ G + 
Sbjct: 242 SQAVIAETYIVARGNKPFASGDSMSAMFKRWCIDAGLNHLSAHGVRKGLAELLAEQGCSQ 301

Query: 305 HELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
           +E+MA  G      +E YT+  +R +L  +   R+ 
Sbjct: 302 YEIMAILGHSEAKTSEVYTRRVERWKLAQQAMDRLD 337


>gi|255262833|ref|ZP_05342175.1| phage integrase family protein [Thalassiobium sp. R2A62]
 gi|255105168|gb|EET47842.1| phage integrase family protein [Thalassiobium sp. R2A62]
          Length = 336

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 68/344 (19%), Positives = 127/344 (36%), Gaps = 13/344 (3%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63
              LP  V ++  R+G  +Y+ R+G   +  L       F   Y S L+G  P       
Sbjct: 3   KRELPKHVYRQ--RNG--LYFQRRGWKSQKFLAEFGTPEFWTEYASILSGERP------V 52

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
            +    + K LI  Y +S+ +  L   + + ++ Y        GD +   +  K +    
Sbjct: 53  SKITARSFKALIKSYHRSSRYTQLKPRTALDYDKYLRFFEDVMGDANPVNMKRKDVIRLR 112

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
           +S    P  A   L  +RVL +  V   +  +NP   V   K   +   PW +E + Q++
Sbjct: 113 DSNADKPYFANYSLRVLRVLLEHCVDLGWREMNPARGVSEIKTVKKARSPWPQELLDQYR 172

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
                G++ RLA E  + +G R  D        +Q+  F+++  KTG  + + +      
Sbjct: 173 IACPLGTRERLAMELCVGTGQRIGDVIEMRWSDIQDGGFAVRQNKTGKQLWIPILPELQA 232

Query: 244 LLAMTPIGKETFFINNDKQ-KMNATQFSIWFKAKATKAG-VNKSAHGVRKFSATISADAG 301
            L            N     + +    +   K    +   ++   H  R  +A    +AG
Sbjct: 233 ALDAASRHSVFILTNERGTNRWSYRGVAQAVKKVRDQINALDFDIHSWRYNAACELVEAG 292

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345
                + A  G ++    + YTK   +    I+  +  +    +
Sbjct: 293 CGDDLVAAVTG-QSAAMVQHYTKQVRQRVRAIQAQQMRTEQKQN 335


>gi|163736741|ref|ZP_02144160.1| phage integrase [Phaeobacter gallaeciensis BS107]
 gi|161390611|gb|EDQ14961.1| phage integrase [Phaeobacter gallaeciensis BS107]
          Length = 333

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 77/336 (22%), Positives = 139/336 (41%), Gaps = 20/336 (5%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLP-YPHESTFIPAYMSALTGSTPKREYINSPRKK 67
            +VT  +T  G++ YYFR+G   + RLP  P    F  AY +  +G         S ++ 
Sbjct: 8   KYVT-TKTVKGRVYYYFRRGETYQ-RLPNDPDSQEFDNAYWAIRSG--------RSQKQT 57

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127
            TT + LI  Y ++  +       +  +    + I  K+G  D+ K+  +++ +  ++  
Sbjct: 58  KTTFEALIVSYYQTPEFKDRKPRVQQEYRRTLELIREKNGPKDFTKLRRRNVIAARDAYA 117

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            T   A   +  + +L + A+  E++  NP   V++ K      +PW    ++ F+++  
Sbjct: 118 DTWRKANAMVEMISILSRHAIDLEWITANPASGVKKLK--GGEYQPWPAAKLRAFEAYCE 175

Query: 188 EGSQ--PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
            GS      A+   + +G R  D       H      S+  +KT   + V  P+     L
Sbjct: 176 SGSLEWELTAYMLGIGTGQRIGDVIGMEWAHYDGQFISVVQEKTAARLWVACPEFLRTYL 235

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA---HGVRKFSATISADAGA 302
              P      FI          + +I  +  A +  +   A   HG R  +A   A+AGA
Sbjct: 236 DNLPRSGR--FIIAQSLHKGVAKRTIQQRVMAVREKIGAQAFVIHGWRYTAAVHLAEAGA 293

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338
           +  E+ A  G KT++  + Y   A++ RL      R
Sbjct: 294 SDSEIQAVTGHKTLEMVKKYRNQANQKRLSQAAQAR 329


>gi|254476705|ref|ZP_05090091.1| phage integrase [Ruegeria sp. R11]
 gi|214030948|gb|EEB71783.1| phage integrase [Ruegeria sp. R11]
          Length = 332

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 79/327 (24%), Positives = 134/327 (40%), Gaps = 15/327 (4%)

Query: 12  TKERTRHGKIIYYFRKGHGRRIRLPY-PHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
           T  +T  G+   YFRK  GR +RLP  P+   +   Y   + G  P  +          T
Sbjct: 7   TSSKTIKGRTYQYFRK-DGRYVRLPDDPNSEEYDREYWRLMRGDGPLSQRY--------T 57

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
            + LI  Y++S  W SLA  +R  +    + I  K G  D  K+    I     + +H  
Sbjct: 58  FEKLILSYKQSPRWESLAPRTRADYSRVLEYISDKLGSKDPTKMRRSTIIDAQMANRHRA 117

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
             A      + +LF+ ++  ++   NP   + + K   EG RPW    +  ++       
Sbjct: 118 RFANYIPHMLSILFEHSIDLDWQRDNPAKGISKIKT-GEGHRPWPTSAITAYRKH--ANG 174

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250
              L FE  L +G R SD  R   +H+++    +   KT   + +        ++  +  
Sbjct: 175 LALLIFELALGTGQRASDLTRMEWEHIEDGGIWVTQGKTKARLWLPFTARLAAVIDASQK 234

Query: 251 GKETFFINND-KQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELM 308
               F + +    ++N  Q      A    A +   S HG+R  +A   A+AG T  ++ 
Sbjct: 235 TSAKFILADRFGNQLNYDQLQKKVMAVRRIANLTEYSLHGLRYSAAGELAEAGCTDQQIA 294

Query: 309 ATYGWKTVDQAETYTKGADRIRLGIKN 335
           A  G K++   + Y+KGA + RL  + 
Sbjct: 295 AITGHKSLSMVQKYSKGASQKRLAQEA 321


>gi|121602161|ref|YP_989344.1| integrase [Bartonella bacilliformis KC583]
 gi|120614338|gb|ABM44939.1| integrase [Bartonella bacilliformis KC583]
          Length = 250

 Score =  254 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 88/247 (35%), Positives = 139/247 (56%), Gaps = 3/247 (1%)

Query: 101 QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
           +++   G   Y+ I  KHI +GVE RK TP++A  FL ++  LFKWA+ Q  +  N  L 
Sbjct: 2   KVLDSIGHLSYKVIQKKHIIAGVERRKETPATAQNFLKALNSLFKWAMEQGLLEKNSTLG 61

Query: 161 VERPKRK-TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN 219
           V+ P  K  +G   W++ D+ ++   W  G+  R+  + LLY+GLR  D+ R G + + +
Sbjct: 62  VKAPPLKNKDGFIVWSEADIDKYYYHWPLGTHERVWIDILLYTGLRRGDAIRIGWKDVTD 121

Query: 220 NIFSIKTQKTGTI--ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKA 277
           NI  IKT+K+     + + +     + L + PIG+ETF    + +K+    F   F+   
Sbjct: 122 NIIHIKTEKSKFQMDVFLPILPELAETLEIGPIGEETFICGKNGKKLTKEGFGNVFREAC 181

Query: 278 TKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
             A V KSAHG+RK +AT +A+AGAT  +L A +GW   + A  YTK ADR RL ++  +
Sbjct: 182 NVANVKKSAHGLRKLAATRAANAGATVAQLKAIFGWTEDNMASLYTKSADRKRLALETIK 241

Query: 338 RISSVVD 344
           ++  + D
Sbjct: 242 KLQKMRD 248


>gi|254476808|ref|ZP_05090194.1| phage integrase [Ruegeria sp. R11]
 gi|214031051|gb|EEB71886.1| phage integrase [Ruegeria sp. R11]
          Length = 333

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 74/334 (22%), Positives = 134/334 (40%), Gaps = 16/334 (4%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLP-YPHESTFIPAYMSALTGSTPKREYINSPRKK 67
            +VT  +T  G++ YYFR+G   + RLP  P    F  AY +  +G         + +K 
Sbjct: 8   KYVT-TKTVKGRVYYYFRRGETYQ-RLPNDPDSQEFDDAYWAIRSG--------RAKKKT 57

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127
            TT + LI  Y ++  +       R  +    + I  K+G  D+ K+  + + +  ++  
Sbjct: 58  KTTFEALIVSYYQTPEFKDRKPRVRQEYRRTLELIREKNGPKDFTKLRRRDVIAARDAYS 117

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            T   A   +  + +L + A+  E++  NP   V++ K      +PW    ++ F+++  
Sbjct: 118 DTWRKANAMVEMISILSRHAIDLEWITANPASGVKKLK--GGEYQPWPAAKLRAFEAYCE 175

Query: 188 EGSQ--PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
             +      A+   + +G R  D       H      S+  +KT   + V  P+   K L
Sbjct: 176 NNALEWELTAYMLGVGTGQRIGDVIGMEWAHYDGQFISVVQEKTAARLWVACPEFLRKYL 235

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATA 304
              P         +  + +          A   + G      HG R  +A   A+AGA+ 
Sbjct: 236 DGLPRKGRFIIAQSLHKGVAKRTIQQRVMAVRKEIGAQAFVIHGWRYTAAVHLAEAGASD 295

Query: 305 HELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338
            E+ A  G KT++  + Y   A++ RL      R
Sbjct: 296 SEIQAVTGHKTLEMVKKYRSQANQKRLSQTAQAR 329


>gi|99081169|ref|YP_613323.1| phage integrase [Ruegeria sp. TM1040]
 gi|99037449|gb|ABF64061.1| Tyrosine recombinase xerD [Ruegeria sp. TM1040]
          Length = 333

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 75/334 (22%), Positives = 132/334 (39%), Gaps = 16/334 (4%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLP-YPHESTFIPAYMSALTGSTPKREYINSPRKK 67
            +VT  +T  G++ YYFR+G   + RLP  P    F  AY +  +G         + +K 
Sbjct: 8   KYVT-TKTVKGRVYYYFRRGETYQ-RLPNDPDSQEFDDAYWAIRSG--------RAKKKA 57

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127
            TT + LI  Y ++  +       +  +    + I  K+G  D+ K+  + + +  ++  
Sbjct: 58  KTTFEALIVSYYQTPEFRDRKPRVQQEYRRTLELIREKNGPKDFTKLRRRDVIAARDAYA 117

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            T   A   +  + +L + A+  E++  NP   V+  K       PW    +Q F++F  
Sbjct: 118 DTWRKANAMVEMISILSRHAIDLEWITANPASGVK--KLTGGEYEPWPDAKLQAFEAFCK 175

Query: 188 EGSQ--PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
           +        A+   + +G R  D       H      ++  +KT   + V  P    + L
Sbjct: 176 KHDLEWELTAYMLGVGTGQRIGDVVGMEWAHYDGQFIAVVQEKTAARLWVACPTFLKRYL 235

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG-VNKSAHGVRKFSATISADAGATA 304
              P         +  + +          A   K G V    HG R  +A   A+AGA+ 
Sbjct: 236 DGLPRRGRFIIAQSLHKGVAKRTIQQRVMAVREKIGAVGYVIHGWRYTAAVHLAEAGASD 295

Query: 305 HELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338
            E+ A  G KT++  + Y   A++ RL      R
Sbjct: 296 SEIQAVTGHKTLEMVKKYRSQANQKRLSKSAQAR 329


>gi|260462715|ref|ZP_05810921.1| integrase family protein [Mesorhizobium opportunistum WSM2075]
 gi|259031621|gb|EEW32891.1| integrase family protein [Mesorhizobium opportunistum WSM2075]
          Length = 432

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 84/366 (22%), Positives = 146/366 (39%), Gaps = 32/366 (8%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTG-STPKREYINSPRKK 67
           P ++    RHGK+ + +R    R + LP P +  F  AY +A+ G   PK   +  P   
Sbjct: 6   PGLSSYTDRHGKLRWRYRTKE-RVVSLPAPTQPGFKDAYQAAVEGRKVPKAPVVRMPGSA 64

Query: 68  -PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII---------RKSGDFDYRKITTK 117
            P T        + S  W +L   S+   +   ++ +             D   + +   
Sbjct: 65  LPGTFGAAFQRLKISVKWLALDEASKRKNKRLIEEFLVLRVVPDHPLIWRDVPVKNLRRI 124

Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
           HI   +     TP  A   L  +R L   A+RQ+++ I+P  +VE  +    G + W++E
Sbjct: 125 HIEELLGRFIATPHKAKHLLVGIRKLVYVALRQDWIEIDPTAAVEW-RPAYAGWKAWSRE 183

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH-------LQN-----NIFSIK 225
            M QF++ W  G+  R  +   L+ G R  D               +       + F I 
Sbjct: 184 AMAQFENRWQLGTAARTCYGLALWLGNRRGDVAGLRWDQRVTRRVFIDGVERHFDGFDIV 243

Query: 226 TQKT-----GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280
             K      G  + V +     ++L       ET  +N   +  +A   +         A
Sbjct: 244 QGKNKGRTGGKRLFVPITPMLSEILDAADRRGETVLVNAYGEPFSAKSLTGMMAHWCKLA 303

Query: 281 GVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338
           G+ K  + HG+RK      A+A A+  ++M   G   +D AE Y++ A ++RL ++   R
Sbjct: 304 GLPKGLTLHGLRKSLGVYLAEAEASTRQMMDVLGHDDIDHAELYSREASQVRLAVQGMDR 363

Query: 339 ISSVVD 344
           +  +V 
Sbjct: 364 VVRLVT 369


>gi|149915062|ref|ZP_01903591.1| Possible integrase/recombinase [Roseobacter sp. AzwK-3b]
 gi|149811250|gb|EDM71087.1| Possible integrase/recombinase [Roseobacter sp. AzwK-3b]
          Length = 329

 Score =  253 bits (645), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 83/326 (25%), Positives = 152/326 (46%), Gaps = 15/326 (4%)

Query: 29  HGRRIRLP-YPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSA----H 83
             R+I L   P    F+  Y  A  G  P+       +  P +L WLI+++ KS      
Sbjct: 5   KSRKIALGVDPDHPEFMERYTRARNGKRPEIPR-EEDKAIPQSLSWLIAKFEKSMQERVR 63

Query: 84  WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL 143
            G++   +     +++D++    GD    ++    I    +S   TP +A   + ++R L
Sbjct: 64  AGAMHPGTLKQRSAFYDRLRAPYGDKHM-EMPRSKIIEIRDSMIATPGAADNMVKALRAL 122

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203
           + W+V   +V  NP   + +  R T G  PW+ +D++ FK   S+GS   LA    +++ 
Sbjct: 123 YAWSVENGFVRSNPASGIGKINRGT-GATPWSIDDLRAFKDHHSKGSMAHLALTLFMFTA 181

Query: 204 LRCSDSCRAGVQH-LQNNIFSI----KTQKTGTIITVELPDGFMKLLAMTPIGKETFFIN 258
            R SD    G QH ++    +       +K    +TV +       +A   +   T+ +N
Sbjct: 182 CRISDVVILGRQHEIERGGITYLDWQPAKKGSARVTVPILPPLADAIAAQKVVGSTYLLN 241

Query: 259 NDKQKM-NATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTV 316
              +   +A  F  WF+ +  +AG++ +S HG+RK +  + A  GAT + +MA +G    
Sbjct: 242 GHGKPFASAAAFGNWFRDRVREAGLDGRSPHGIRKAAGELMALQGATQYHIMAVHGHTQA 301

Query: 317 DQAETYTKGADRIRLGIKNSRRISSV 342
             +E YT+G +R RL  +  ++++S+
Sbjct: 302 KTSEGYTRGVNRQRLAAEAMQKMASM 327


>gi|332186915|ref|ZP_08388656.1| phage integrase family protein [Sphingomonas sp. S17]
 gi|332012925|gb|EGI54989.1| phage integrase family protein [Sphingomonas sp. S17]
          Length = 357

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 78/347 (22%), Positives = 135/347 (38%), Gaps = 21/347 (6%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPY-PHESTFIPAYMSALTGSTPKREYINSPRKK 67
             VT    RHGK+   FRK     + + + P E  F   Y + L      R  I      
Sbjct: 6   KNVTVNPDRHGKLRARFRKTGRPAVYMKHLPDEKGFKEEYEALLA----NRPLIVVRPAV 61

Query: 68  PTTLKWLISEYRKSAHWGSLAVN-SRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
           P ++  L+S Y  S  +       ++   +   D   +   D        +HI + + +R
Sbjct: 62  PGSVGDLVSRYYASGDFKGRGTAETQARRKYLIDSFRQDVADDLVSDFGFEHIEAILLAR 121

Query: 127 KHTPS------------SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP-KRKTEGIRP 173
                            +A++    +R LF +A + +++  NP        K+K  G   
Sbjct: 122 TEKRWDETRKRMMGGEVAAVKLRKELRRLFAYAKKLKWIEQNPVEEAAPIGKQKLTGFHT 181

Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233
           WT++++ QFK+    G++ RLA E +L++G R  D+   G  H+     +    K    +
Sbjct: 182 WTEDEISQFKARHPIGTRARLALEIMLWTGQRRGDARLFGPAHVVRGKINFTAAKNQADL 241

Query: 234 TVELPDGFMKLLAMTP-IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRK 291
            + +     + +     IG  TF +    +      F    +    +AG+   +AHG+RK
Sbjct: 242 WLPIAPDLRRAIDAMDSIGLRTFLVTTAGKTFTKDGFGNKMREWCDEAGLPQCTAHGLRK 301

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338
                 A + AT  E+ A  GWK   +   YT  A++  L      R
Sbjct: 302 AIGRRMAQSQATQLEIKAVGGWKGDSEVAIYTAAAEQEGLADGAMSR 348


>gi|83311808|ref|YP_422072.1| integrase [Magnetospirillum magneticum AMB-1]
 gi|82946649|dbj|BAE51513.1| Integrase [Magnetospirillum magneticum AMB-1]
          Length = 335

 Score =  250 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 76/339 (22%), Positives = 135/339 (39%), Gaps = 17/339 (5%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPY-PHESTFIPAYMSALTGSTPKREYINSPRKK 67
            +VT+ +  H    +Y+R+      RLP  P    F   Y             +      
Sbjct: 2   KYVTETKPGH----FYYRRNGRYWGRLPGLPGSIEFATEYARL----NASFADVGKTPAV 53

Query: 68  PTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
           P T   ++  Y  S  +  +L   ++ ++    D +  + G F    I  KH+    +  
Sbjct: 54  PGTFDAMVEAYLASGEYRQNLKQKTKDAYRYDLDILRTRFGKFRVADIEVKHVLKMRDFF 113

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC--LSVERPKRKTEGIRPWTKEDMQQFKS 184
              P  A   + ++RV+F W + +  +  NP     V   K K    +PW    + +F++
Sbjct: 114 ADKPGKANTLVRTLRVVFGWGIGRGLMKTNPADLKGVNVKKLKIGAHKPWAPAALAKFRA 173

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
                    LAFE  L +G R  D  R     + + +  +  +KTG  + + +      +
Sbjct: 174 EGQPHLV--LAFELGLATGQRQGDLIRLRWDDISDGVVHVAQEKTGKELWLPVSKHLAGV 231

Query: 245 LAMTPIGKETFFINNDKQKM-NATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGA 302
           LA  P    T  +N+       A   +  F A+ T+ G++    HG+RK +A   AD G 
Sbjct: 232 LARAPRQAVTVLVNSRGTPWIKANPLAQAFGAEITRLGLDGLVFHGLRKTAAVALADVGC 291

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
           +  ++ A  G ++    E YT+GAD+ RL      ++  
Sbjct: 292 STKQIAAVTG-QSDQMVEHYTRGADQKRLAKAAVVKLER 329


>gi|310815686|ref|YP_003963650.1| integrase/recombinase [Ketogulonicigenium vulgare Y25]
 gi|308754421|gb|ADO42350.1| integrase/recombinase [Ketogulonicigenium vulgare Y25]
          Length = 361

 Score =  247 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 91/334 (27%), Positives = 152/334 (45%), Gaps = 25/334 (7%)

Query: 12  TKERTRHGKIIYYFRKGHGRRIRLPY--PHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
            K   R GK   YF++     ++LP     +  F+ AY  A + +  K            
Sbjct: 15  IKTVVRRGKTYRYFQRRGFPLVKLPDLPMDDPAFLRAYAEAKSANPEKSP------AAAG 68

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           +   L+    KS H+    + +R  F  + D ++ + G+   R + ++HIR+ +      
Sbjct: 69  SFAALVRAALKSDHYSQSKLATRAMFRRHCDALVEEFGELPARGLRSRHIRANL----PK 124

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG-IRPWTKEDMQQFKSFWSE 188
            +S    L + R L  + V    +  N  L V  PK K++G   PWT++++  F++ W  
Sbjct: 125 STSQGHRLRTWRFLCSFGVATNLLERNEALDVAMPKAKSKGGHPPWTQDEIAAFRTRWPM 184

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE----LPDGFMKL 244
           GS  R AFE L +SG R SD+ R G   ++  + + +  KT     +     LPD    L
Sbjct: 185 GSATRAAFELLRFSGARISDAVRLGPGMVRGGVLTYRQVKTDGPAHIPWSCPLPDFAAHL 244

Query: 245 L--------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATI 296
                    A+  +  +  +++   +  +        +  A +AG  KSAHG+RK  AT 
Sbjct: 245 SEDRAIMHHALEALAGQMTYLDARGKARSEKSLGTMIREAAMEAGFKKSAHGLRKSLATE 304

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
            A+ GATAH++ A  G +T+ + + YTK ADR R
Sbjct: 305 LAEGGATAHQISAWTGHETLKEVDHYTKSADRRR 338


>gi|77462632|ref|YP_352136.1| putative tyrosine recombinase [Rhodobacter sphaeroides 2.4.1]
 gi|77387050|gb|ABA78235.1| Putative Tyrosine recombinase [Rhodobacter sphaeroides 2.4.1]
          Length = 341

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 82/337 (24%), Positives = 146/337 (43%), Gaps = 18/337 (5%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
           P V + R R G +  Y R+      R     +  F+ A+++       +R      R + 
Sbjct: 3   PRVHRVR-RGGTVYKYHRRTRKELPRDVPEDDPRFVAAWLAE-----EQRAPTVRSRSQA 56

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128
            T+      Y  S  +  L+   R     + ++I  +      + +  +HIR+ +E    
Sbjct: 57  GTIAAACEAYLGSRSYRELSDGYRPVIRRHVERIKEQGEKALLKDLLPRHIRADLEPL-- 114

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT-EGIRPWTKEDMQQFKSFWS 187
           +P  A   L + R L ++ + +  +  +P   V+R K     G   WT ED++ F++ W 
Sbjct: 115 SPPVASSRLKAWRKLAEFWLLKGMLDADPSEGVKRKKMGKVAGFTEWTAEDLEAFRARWP 174

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-QNNIFSIKTQKTGTIITVE-------LPD 239
            G+  RLA E   ++G RC D  R G Q + ++ + +   QKTG    V        L +
Sbjct: 175 IGTAQRLALELYQWTGARCVDVIRLGPQMVGRDGVLTYVQQKTGNPAHVPWTCPAFGLEE 234

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISA 298
               L+   P+G   + +    +       S WF A A +AG+  ++AHG+RK+     A
Sbjct: 235 QRADLMRCLPVGSPVYMLTEYGKPRTQKGVSQWFSAAAREAGLESRTAHGLRKYRMNALA 294

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335
           + GA+   + +  G  T+ + + YT+ ADR R+    
Sbjct: 295 EHGASVLVMQSWVGHTTLLEVQEYTRRADRRRVISGG 331


>gi|119386802|ref|YP_917857.1| phage integrase family protein [Paracoccus denitrificans PD1222]
 gi|119377397|gb|ABL72161.1| phage integrase family protein [Paracoccus denitrificans PD1222]
          Length = 335

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 76/336 (22%), Positives = 135/336 (40%), Gaps = 16/336 (4%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63
              LP +V  +  R    +Y+ R G  +R+    P  + F   Y   + G  P  +    
Sbjct: 2   KRSLPAYVYAKGKR--GYLYFCRWGKTQRMYA-APGTAEFAAEYALLMRGRPPAPKR--- 55

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
                 T+K LI +Y +S  W +LA N++ S+  +F  +   +G  D   + T HI    
Sbjct: 56  ------TIKGLIQKYMESERWPALAQNTKKSYRRHFGYLEEVAGHIDPATLRTAHIYEMR 109

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
           ++ + TP+ A + + ++  L    VR  ++  NP   VE+ K       PW    ++ F+
Sbjct: 110 DALRDTPTDANRKIGTLSTLLAHGVRIGWLDRNPAEGVEKLKGLRPPREPWPDTKIKAFR 169

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
                   P L FE LL +G R  D  +     +++    ++ QKTG  I V   D    
Sbjct: 170 G--EAAPLPLLIFEMLLGTGQRIGDVLKMRWDDIEDGGIWVRQQKTGAGIFVPFTDELAA 227

Query: 244 LLAMTPIGKETFFINNDKQKMNAT-QFSIWFKAKATKAGVNKSAHGVRKFSATISA-DAG 301
           +L  TP   +T     + +  + +    +  + +     +    H +R  +A   A   G
Sbjct: 228 ILEQTPRQGDTIIAQPNGRPCSYSFAHKLVTEVRVKIDAMAWDIHALRHSAAAEIASLPG 287

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
            +   +MA  G  +   A  Y++ AD      +   
Sbjct: 288 MSIEHVMAITGHSSEQMARHYSRKADMRAKAREAQN 323


>gi|149915233|ref|ZP_01903761.1| phage integrase [Roseobacter sp. AzwK-3b]
 gi|149810954|gb|EDM70793.1| phage integrase [Roseobacter sp. AzwK-3b]
          Length = 325

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 74/321 (23%), Positives = 130/321 (40%), Gaps = 18/321 (5%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63
             +LP +V   R R G   Y+ R    +RI    P  + F   Y   L G         +
Sbjct: 3   KRQLPKYVYA-RGRKG-YPYFIRGNTCQRIFA-EPGSNAFWAEYNRLLNG---------A 50

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
           P     T+  LI  Y +S  W   A N+R S+E  F     K G  D   I  +H+    
Sbjct: 51  PTAPKRTINKLIEHYMRSPDWAKKAHNTRKSYERSFLYFRDKIGLVDPASIRRRHVNDMR 110

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI-NPCLSVERPKRKTEGIRPWTKEDMQQF 182
           ++   TP++A + + ++ VL   A+   +V   NP   V++    T+    W  + ++ F
Sbjct: 111 DALSATPTTANRRVAALSVLMNHAIDIGWVEHVNPARGVKQL-DGTKTREAWPVDMVEAF 169

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
           ++  +  +   L FE L+ +G R  D        +++N   ++  KT   + +      +
Sbjct: 170 RTAATGQT--LLLFELLIGTGQRIGDVLNMQWGQIEDNGIVVRQSKTKAEVWIPFTRRLL 227

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG-VNKSAHGVRKFSATISADAG 301
            +L  TP     + IN++  ++       W      + G  +   HG+R  +A+  A  G
Sbjct: 228 DMLNKTPRNAL-YIINHEGHRVAYNTAWKWVMDVRKQIGATDYDIHGLRHTAASELAALG 286

Query: 302 ATAHELMATYGWKTVDQAETY 322
            T  E+M+  G  +      Y
Sbjct: 287 MTDEEIMSITGHTSAAMVRLY 307


>gi|146276876|ref|YP_001167035.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17025]
 gi|145555117|gb|ABP69730.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17025]
          Length = 294

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 63/273 (23%), Positives = 121/273 (44%), Gaps = 7/273 (2%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           +I +Y  S  + +L+ + + +     D +  ++G + + ++  +H+   + ++K  P++A
Sbjct: 1   MIEQYLGSLRFQNLSDSRKRTIRHELDWLREQAGRYHFARLEVRHVEK-LMTKKAGPTAA 59

Query: 134 IQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
                +M +L+ +A ++  Y   NP    E+ K   +G   W +E++++F      G++ 
Sbjct: 60  NTVKKNMSMLYNFASKKLGYKGPNPAKFAEKLKTNPDGYHTWNEEEVERFLDRHGPGTKA 119

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI-- 250
            L     L +G+   D  R G QH++    + +  KT     + +       L       
Sbjct: 120 HLVILLALNTGMARQDLARVGRQHVKAGRIAYRRGKTSVAADLPILPELAVELEAALANW 179

Query: 251 -GKETFFINNDKQK--MNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHEL 307
              +  FI  DK+           WF+ +  +A V  + HG+RK  AT  ADAGAT  E+
Sbjct: 180 SDGQMLFITQDKRPVGYTPESLGNWFRDRCAEANVPGALHGLRKAGATRLADAGATEWEI 239

Query: 308 MATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
            +    K    A  Y K A+R RL      +++
Sbjct: 240 ASYLAHKDTKTAAIYVKKANRARLADSGFAKLT 272


>gi|85707546|ref|ZP_01038619.1| Phage related integrase [Roseovarius sp. 217]
 gi|85667933|gb|EAQ22821.1| Phage related integrase [Roseovarius sp. 217]
          Length = 339

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 77/347 (22%), Positives = 133/347 (38%), Gaps = 26/347 (7%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRI---RLP-YPHESTFIPAYMSALTGSTPKREYINSP 64
           P++ + +T  G+   YFR   G ++   RLP  P    F+ AY +  +G           
Sbjct: 7   PYL-EFKTVKGRDYIYFRLDRGSKVTRHRLPSNPDSEEFMQAYWAIRSG--------RKK 57

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
            +  TT   L++E+ K+  +   A  +R ++  + + I  K+G+ D ++   K   +   
Sbjct: 58  VQSKTTWHNLVTEFYKTPGYLGKAKGTRENYRRHCEAIREKNGEKDVQRFKRKDALAVQR 117

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
           + + T S A + +  + +L K AV  E++  NP   V+ PK       PW  + +  ++ 
Sbjct: 118 ALQDTWSKANERIAVLSILCKLAVDLEWIDRNPV--VDIPKLSGGEYEPWPDDKLTAYER 175

Query: 185 FWSEG--SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
           +      +  R  +E  + +G R  D              S+   KTGT +T+  P    
Sbjct: 176 YCDRHDLTDARTIYELCIGTGQRIGDCVAMRWDDFDGEFMSVVQDKTGTKLTIYCPARLQ 235

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS-----AHGVRKFSATIS 297
             L   P         N  Q M         +   T   +         HG R  +A   
Sbjct: 236 TYLCTLPRKGRHIMAKNLTQPMGKRAAQKAVEGVRTALDIMHGEARLVPHGWRYTAAVQL 295

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
           +DAG    E+ A  G KT++    Y    D+       S+R     D
Sbjct: 296 SDAGCDDAEIQAVTGHKTMEMVRKYRARRDQK----AASKRAQQKRD 338


>gi|294677620|ref|YP_003578235.1| phage integrase [Rhodobacter capsulatus SB 1003]
 gi|294476440|gb|ADE85828.1| phage integrase [Rhodobacter capsulatus SB 1003]
          Length = 356

 Score =  236 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 92/353 (26%), Positives = 156/353 (44%), Gaps = 18/353 (5%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
             V ++R R  +++ Y R    R   LP  H   F+ A+ +A    T             
Sbjct: 2   KGVRRQR-RGERVVKYHRASGIRLPDLPETH-PDFVAAWAAAEASLTGPAALARKAPVAA 59

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128
            TL   I   + S  +  L+   +      FD +    G    + + ++HI + ++  K 
Sbjct: 60  GTLAAAIRAEKTSRPFAELSSLYQSILRKDFDAMEAAYGTAPLKGLRSRHIEADLD--KL 117

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           +  +A + L + R +   A R+  +  +P + V R K KTEG   WT+++++QF++ W  
Sbjct: 118 SADAANKRLKAWRRVMGGARRRGEIESDPSIEVRRIKVKTEGFPAWTQDEVEQFRARWPI 177

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAM 247
           G+  R  FE + ++G R +D+ R G  ++    + S +  KT     V   +      A 
Sbjct: 178 GTVQRACFELVCWTGARTNDAVRLGPCNIDHGGVLSYRQSKTANPAMVPWSNPLPGYAAA 237

Query: 248 TPIGKETF------------FINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSAT 295
               +ET             F+  + +  +           A  AGV KSAHG+RK+  T
Sbjct: 238 WAAERETVKAALACLSGGFTFLEANGRVRSVKGLGNVISEAARGAGVEKSAHGLRKYRLT 297

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
             A+AG +AH +MA  G +T+ +AE YT+ ADR RL +    +  +VV    P
Sbjct: 298 AIAEAGGSAHAIMAWGGHQTLVEAEHYTRAADRRRL-VMGVEQGGNVVSPRSP 349


>gi|221638486|ref|YP_002524748.1| Tyrosine recombinase [Rhodobacter sphaeroides KD131]
 gi|221159267|gb|ACM00247.1| Tyrosine recombinase [Rhodobacter sphaeroides KD131]
          Length = 313

 Score =  235 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 74/306 (24%), Positives = 134/306 (43%), Gaps = 13/306 (4%)

Query: 41  STFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD 100
               P +++A      +   + S R +  T+      Y  S  +  L+   R     + +
Sbjct: 2   PEDDPRFVAAWLAEEQRAPTVRS-RSQAGTIAAACEAYLGSRSYRELSDGYRPVIRRHVE 60

Query: 101 QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
           +I  +      + +  +HIR+ +E    +P  A   L + R L ++ + +  +  +P   
Sbjct: 61  RIKEQGEKALLKDLLPRHIRADLEPL--SPPVASSRLKAWRKLAEFWLLKGMLDADPSEG 118

Query: 161 VERPKRKT-EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-Q 218
           V+R K     G   WT ED++ F++ W  G+  RLA E   ++G RC D  R G Q + +
Sbjct: 119 VKRKKMGKVAGFTEWTAEDLEAFRARWPIGTAQRLALELYQWTGARCVDVIRLGPQMVGR 178

Query: 219 NNIFSIKTQKTGTIITVE-------LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI 271
           + + +   QKTG    V        L +    L+   P+G   + +    +       S 
Sbjct: 179 DGVLTYVQQKTGNPAHVPWTCPAFGLEEQRADLMRCLPVGSPVYMLTEYGKPRTQKGVSQ 238

Query: 272 WFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
           WF A A +AG+  ++AHG+RK+     A+ GA+   + +  G  T+ + + YT+ ADR R
Sbjct: 239 WFSAAAREAGLEGRTAHGLRKYRMNALAEHGASVLVMQSWVGHTTLLEVQEYTRRADRRR 298

Query: 331 LGIKNS 336
           +     
Sbjct: 299 VISGGQ 304


>gi|3128300|gb|AAC16152.1| integrase/recombinase [Rhodobacter capsulatus SB 1003]
          Length = 344

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 89/338 (26%), Positives = 148/338 (43%), Gaps = 17/338 (5%)

Query: 24  YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAH 83
           Y R    R   LP  H   F+ A+ +A    T              TL   I   + S  
Sbjct: 4   YHRASGIRLPDLPETH-PDFVAAWAAAEASLTGPAALARKAPVAAGTLAAAIRAEKTSRP 62

Query: 84  WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL 143
           +  L+   +      FD +    G    + + ++HI + ++  K +  +A + L + R +
Sbjct: 63  FAELSSLYQSILRKDFDAMEAAYGTAPLKGLRSRHIEADLD--KLSADAANKRLKAWRRV 120

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203
              A R+  +  +P + V R K KTEG   WT+++++QF++ W  G+  R  FE + ++G
Sbjct: 121 MGGARRRGEIESDPSIEVRRIKVKTEGFPAWTQDEVEQFRARWPIGTVQRACFELVCWTG 180

Query: 204 LRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF------- 255
            R +D+ R G  ++    + S +  KT     V   +      A     +ET        
Sbjct: 181 ARTNDAVRLGPCNIDHGGVLSYRQSKTANPAMVPWSNPLPGYAAAWAAERETVKAALACL 240

Query: 256 -----FINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMAT 310
                F+  + +  +           A  AGV KSAHG+RK+  T  A+AG +AH +MA 
Sbjct: 241 SGGFTFLEANGRVRSVKGLGNVISEAARGAGVEKSAHGLRKYRLTAIAEAGGSAHAIMAW 300

Query: 311 YGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
            G +T+ +AE YT+ ADR RL +    +  +VV    P
Sbjct: 301 GGHQTLVEAEHYTRAADRRRL-VMGVEQGGNVVSPRSP 337


>gi|119386556|ref|YP_917611.1| phage integrase family protein [Paracoccus denitrificans PD1222]
 gi|119377151|gb|ABL71915.1| phage integrase family protein [Paracoccus denitrificans PD1222]
          Length = 357

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 62/356 (17%), Positives = 137/356 (38%), Gaps = 28/356 (7%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLP---YPHESTFIPAYMSALTGSTPKREYINSPR 65
           P +  E  R+G   Y  R    + +R+     P +  F   Y +A  G   +R   +  +
Sbjct: 6   PGLLIESHRNGSPRYRVRVEGRKHVRIHLPVGPEDKDFANYYYAARAG---ERWLPSERK 62

Query: 66  KKPTTLKWLISEYR----KSAHWGSLAVNSRISFESYFDQIIR-------KSGDFDYRKI 114
               ++ WL +EY     +    G ++  +     S   ++         + GDFD    
Sbjct: 63  AVKGSIDWLCAEYLSFVARMVEAGQMSPATLKQRRSVLRRLCDYSGGGSVRYGDFDMDAP 122

Query: 115 TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT-EGIRP 173
                    ++    P +A   + ++R ++ WA  +EY+  NP   ++        G  P
Sbjct: 123 AAA-FIEIRDAWATHPGAADNLIKTVRAVYTWAQEREYIRHNPAAGIKAINVNPAGGAVP 181

Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH--LQNN--IFSIKTQKT 229
           W+  ++++F+     G+   L      ++  R  D+   G     +++       + +K 
Sbjct: 182 WSVAELKKFREHHPRGTTAHLWLTLHAFTACRIGDAIWLGRAQEVMRDGQLWLGWQPRKR 241

Query: 230 GTI-ITVELPDGFMKLLAMTPIGKETFFINNDKQKM-NATQFSIWFKAKATKAGV-NKSA 286
           G+  +++ +    +            + +N   +   +     +  +   + AG+ ++S+
Sbjct: 242 GSAFVSIPMMPPLIAATRAA--DGPAYLLNEKGKPFASVEALRVRVQRWCSAAGIPDRSS 299

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
           HG+RK    + A  G T +++MA         +E YTK   R  L     + ++++
Sbjct: 300 HGIRKAVGELMAQNGCTQYQVMAVMAHTQAKTSEIYTKRVKRQILAADGVKALAAL 355


>gi|168495175|ref|YP_001686913.1| integrase [Azospirillum phage Cd]
 gi|168148934|emb|CAO99398.1| integrase [Azospirillum phage Cd]
          Length = 295

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 77/287 (26%), Positives = 138/287 (48%), Gaps = 11/287 (3%)

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
           +   +    TL W+I  YR S  +  LA  ++  +E+ FD++       ++  +  +HI 
Sbjct: 1   MKRGKYGHGTLGWVIGRYRLSPEYQRLAPATKKIYEAAFDRLHD-YAQEEFSGLRRRHIM 59

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
              +   H+P++A Q +T++  + ++A+ +E +  +P   V R K  T   R WT  ++ 
Sbjct: 60  RVRDDLAHSPATANQVITAIGAVCRFALDREMIETDPSHRVPRLK--TGEWRRWTDAELD 117

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
           +F     E    R  F   L++G R +D CRA    +Q+   ++  QKTG  + + L   
Sbjct: 118 KFYQSAYEAL--RRVFVMALFTGQRRADLCRATWGDIQDGGINVVQQKTGAHLWIPLHPT 175

Query: 241 FMKLLA-----MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSA 294
             + LA      TP+   T   + D+        S  F+ +A K G+N  + HG+RK +A
Sbjct: 176 LERHLAIWKSDATPLPSVTILTSTDRTPWPPQVLSCAFRNEADKLGLNGCNLHGLRKTAA 235

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
              A+AG +A ++MA  G  T+++ E YT+ A++ RL         +
Sbjct: 236 AKLAEAGCSARQIMAITGHSTMNEVERYTRQAEQRRLASDAIGAFDA 282


>gi|265984520|ref|ZP_06097255.1| integrase/recombinase [Brucella sp. 83/13]
 gi|306839293|ref|ZP_07472110.1| integrase/recombinase protein [Brucella sp. NF 2653]
 gi|264663112|gb|EEZ33373.1| integrase/recombinase [Brucella sp. 83/13]
 gi|306405840|gb|EFM62102.1| integrase/recombinase protein [Brucella sp. NF 2653]
          Length = 333

 Score =  232 bits (592), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 60/294 (20%), Positives = 123/294 (41%), Gaps = 17/294 (5%)

Query: 4   SLRLP-PFVTKERTRHGKIIYYFRKGHGRRIRL-------PYPHESTFIPAYMSALTGST 55
           S R+P  + +++  RHG   +Y R     + R+              F   Y   L G  
Sbjct: 12  SQRVPFKYCSRDIDRHGNERFYLRLPGMPKYRMTSAYLDEAGSITQAFTEEYHRVLAGGR 71

Query: 56  PKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT 115
            ++  +   R +P +++WL+  Y +S  + S +  ++   +S  ++     G+  ++KI 
Sbjct: 72  GEK-AVPISRLEPGSVRWLVETYYRSKAFQSQSPATQKDKKSVLNRYCLNVGELPFKKIR 130

Query: 116 TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
              I +    R  TP +A + +  ++ LF WA+  E     P   V +   ++ G   W+
Sbjct: 131 KSDIEASQMKRSGTPGAADKLVKYLKALFNWAISAELATFTPANGVTKI-HQSPGFHTWS 189

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG----T 231
           + ++ ++++ +  GS  RLA E +L  G+R SD  + G ++L  +      +K       
Sbjct: 190 EAELARYRAAYPLGSMARLAMELMLNLGVRRSDLVKLGWRNLVGDRIEFMPEKGSGKYAQ 249

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK---ATKAGV 282
            +++ + D   + L      + TF I    +  +   F    +        AG+
Sbjct: 250 SLSLPVTDELREALDAITHDQPTFLITEYGKAFSGNGFGNKMRQWVQRCRFAGM 303


>gi|83951418|ref|ZP_00960150.1| Integrase/recombinase [Roseovarius nubinhibens ISM]
 gi|83836424|gb|EAP75721.1| Integrase/recombinase [Roseovarius nubinhibens ISM]
          Length = 352

 Score =  231 bits (590), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 78/336 (23%), Positives = 136/336 (40%), Gaps = 24/336 (7%)

Query: 19  GKIIYYFRKGHGRRIRLPYP--HESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76
           G   YY RK    ++ L         F+  Y +A+             R    +L  +I 
Sbjct: 9   GTTYYYLRKRGQSKVPLGKGPIDSPEFLSRYSAAMGTKK------TPSRAAKDSLGHIIE 62

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF 136
            ++ SA++ + +   R +   + D +    G   + +I   HIRS +     +P +A   
Sbjct: 63  LFKASANYRAYSEAYRGTLGRHSDALKECYGSAPFSEIKPHHIRSDLSQL--SPHAANDR 120

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKR-KTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195
           L   R+L ++A    +        ++R K  KT+G RPW+  D+  F++ W  GS  RL 
Sbjct: 121 LKIWRLLCQYAYDHNFADHVASDGIKRGKLPKTDGHRPWSTADVNAFRAKWEIGSVQRLC 180

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK-- 252
           FE L ++  R  D+       +  + + +    KTG    V                +  
Sbjct: 181 FELLFWTAARTIDAVTLTPSMIGADGVLTFTQAKTGGKAYVPWNCALPGWAKHFETDRTL 240

Query: 253 ---------ETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGA 302
                     TF   ++ +  +    S    A A +A +   SAHG+RK   T  A+AG 
Sbjct: 241 LKACITSTTFTFLETSNGRARSRKGLSNIISAGAAEAKLTGLSAHGLRKSRLTAIAEAGG 300

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338
           +A  +M+  G K++ +AE Y   A+R  + I   ++
Sbjct: 301 SASAIMSWGGHKSLKEAEDYVSTANRKSVLIGTEQK 336


>gi|153009491|ref|YP_001370706.1| phage integrase family protein [Ochrobactrum anthropi ATCC 49188]
 gi|151561379|gb|ABS14877.1| phage integrase family protein [Ochrobactrum anthropi ATCC 49188]
          Length = 297

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 66/290 (22%), Positives = 129/290 (44%), Gaps = 13/290 (4%)

Query: 62  NSPRKKPTTLKWLISEYRK----SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK 117
            S   KP ++ WL+S Y +    S   G+ +  +     +  +++I          I  +
Sbjct: 4   ASEVAKPKSISWLVSSYLEYLEASVVAGTSSGKTLKKKRNLLNRLIEN--PDRVMLIPQE 61

Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
            +    +    TP+ A  F+ ++ V++ WA ++  V+ NP   +++   K +G  PW  +
Sbjct: 62  KLIEMQDKMGSTPAQADAFIEAVGVMYDWAKKRNLVSSNPAKGIDKVYIKGDGAIPWKAD 121

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH--LQNNIFSIKTQ---KTGTI 232
           D+++F +    GS+  +A   LL++G R  D    G ++  +   I +++ Q   K  + 
Sbjct: 122 DVKKFFAKHKPGSKAHVAMSVLLWTGCRIEDLAVLGRKNECVIEGIEAVRWQPSKKGSSE 181

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKM-NATQFSIWFKAKATKAGVN-KSAHGVR 290
           ++V L            +   T+ +    +   +    S  FK     A +   SAHGVR
Sbjct: 182 VSVPLLPALKTATCTPTVQGGTYVLGRGGKPFASGDSMSAMFKRWCKDADLPLLSAHGVR 241

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
           K  A + A+ G + +E+MA  G      +E YT+  +R +L +    R++
Sbjct: 242 KGLAELLAEQGCSQYEIMAILGHSEAKTSEVYTRRVERWKLALGAVERVN 291


>gi|149204078|ref|ZP_01881046.1| putative integrase [Roseovarius sp. TM1035]
 gi|149142520|gb|EDM30565.1| putative integrase [Roseovarius sp. TM1035]
          Length = 346

 Score =  231 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 67/329 (20%), Positives = 121/329 (36%), Gaps = 20/329 (6%)

Query: 22  IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKS 81
           +YY+    G R+    P +  F+ AY +A+     ++E          TL+ +++ Y++S
Sbjct: 22  VYYYAWKGGPRLP-GKPGDPEFVDAYHTAVQTRRSQQE---------GTLQAILNAYQES 71

Query: 82  AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS----GVESRKHT-PSSAIQF 136
             +  LA  ++  +  +  +I  +  DF    +  +  R       +    T    A   
Sbjct: 72  QRFLDLAPRTQRDYARHIRKIEGEYHDFPLSALLERAARGEFLSWRDRMAKTSRRQADYT 131

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196
            + + ++  WA  +  V  NPC    +  R       WT ED   F       S   LAF
Sbjct: 132 YSVLALIIAWAYDRGLVPSNPCERPGKVYRSERIDSVWTSEDEAAFLKVAP--SHIGLAF 189

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFF 256
              L++G R  D  R            ++ +KTG  + + +      +L  T     T  
Sbjct: 190 MLALWTGQRQGDLLRLSWSAYDGERIRLRQRKTGARVEIPVGKPLRAMLDQTSRSAVTIL 249

Query: 257 INNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKT 315
             + K     + F   +     +AGV + + H +R  + T  A AG +  E+ A  G   
Sbjct: 250 ATSRKTSWTESGFRASWGKACKRAGVEDVTFHDLRGTAVTRLAVAGCSVPEIAAITGHSL 309

Query: 316 VDQAETY-TKGADR-IRLGIKNSRRISSV 342
                        R  +LGI   +++   
Sbjct: 310 KQVTAILDAHYLSRDSKLGISAIQKLEEH 338


>gi|119385371|ref|YP_916427.1| phage integrase family protein [Paracoccus denitrificans PD1222]
 gi|119375138|gb|ABL70731.1| phage integrase family protein [Paracoccus denitrificans PD1222]
          Length = 335

 Score =  229 bits (585), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 71/329 (21%), Positives = 141/329 (42%), Gaps = 12/329 (3%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGR---RIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
           P++ + + R G+  + +R+G       +   +P +     AY +       +     +P+
Sbjct: 5   PYL-RSKLRRGRWFHTYRRGDKEISLGVHGLHPTDPRVFAAYCAEHARWEHRPPETATPK 63

Query: 66  KKPTTLKWLISEYRKSAHWGSL---AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122
               T  W +  Y  S +W  L   +  +R + ++   + +R  G+     IT + I + 
Sbjct: 64  S--GTFAWAVDLY-TSGNWKWLNEYSEGTRKARQAILKRYVRAQGNRPLSAITPRDIENA 120

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           + ++      A+    ++R +F+   R  ++  NP + +E  +  +  +     +D+  F
Sbjct: 121 LYAKGG--HGAVNDFKALRPVFEHVKRLGFITRNPMIGIELDRPMSNELPTADADDIAAF 178

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
              W  G+  RL F+  LY+G   +D    G  +++ N+      KTG    V +     
Sbjct: 179 IKRWEVGTVERLIFDLGLYTGAARADLAVIGRHNIKGNVLIFNRVKTGVPSYVPITPELR 238

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGA 302
            ++A TP    TF ++  ++          F+  A  AG+    HG+RK      A+ G 
Sbjct: 239 AVIARTPDISPTFILSKWRKPYQPQSLGQRFEEAAVAAGMKARLHGLRKAFCVYWAENGK 298

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRL 331
           T H++ A  G  T+ + E YT+ ADR ++
Sbjct: 299 TVHQIAAMAGHLTLKEVERYTRAADREQI 327


>gi|260432502|ref|ZP_05786473.1| phage integrase family protein [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260416330|gb|EEX09589.1| phage integrase family protein [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 353

 Score =  229 bits (584), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 84/336 (25%), Positives = 146/336 (43%), Gaps = 23/336 (6%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHE-STFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
           R +    +Y + +  G R+    P +   F+ AY+ A + +  K+    +  +   T+  
Sbjct: 6   RVKQDGKVYRYHRATGTRLPDGIPEDHPDFLAAYLKAESQTGQKKPRRGASPRA-GTVAH 64

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
              ++ KS  +  L+   R    ++ D I+ K G     +I   HI + ++      ++A
Sbjct: 65  AWWQFTKSDAFLDLSEGYRRRMMAHGDDIVAKGGKVPIDQIRAYHIENDIQDMDR--NAA 122

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE-GIRPWTKEDMQQFKSFWSEGSQP 192
              L + R    WA +   V  N    V+ PK K     + W+ + +  F++ W   +  
Sbjct: 123 RTRLKAWRKFLDWA-QPRLVERNWAKLVDMPKAKKGTPHKRWSADHVAAFRNRWPVDTPQ 181

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVE----LPDG------- 240
           RLAFE +L++G+R  D+ R G   +  +   + K +KTG    +     LP         
Sbjct: 182 RLAFELMLFTGMRICDAVRCGPGWIDRDGWMTFKQKKTGGDALIAFNRDLPPFADAEARA 241

Query: 241 -FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN----KSAHGVRKFSAT 295
              + L        TF         +    S WF   A KAG+     ++AHG+R     
Sbjct: 242 YLSECLNARTERHMTFLATIHGTSRSEKAASNWFSDAARKAGLKGDQRRTAHGLRDTCCA 301

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
             A+ GATAH+LM   G +++++AE YTK AD+ R+
Sbjct: 302 RLAEGGATAHQLMTWSGHESLEEAERYTKDADKKRM 337


>gi|126734338|ref|ZP_01750085.1| putative integrase [Roseobacter sp. CCS2]
 gi|126717204|gb|EBA14068.1| putative integrase [Roseobacter sp. CCS2]
          Length = 345

 Score =  229 bits (583), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 72/315 (22%), Positives = 122/315 (38%), Gaps = 20/315 (6%)

Query: 23  YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSA 82
           YY+    G RI+  Y     F+  YM+         +   SP+ K  ++ WLI++Y +S 
Sbjct: 23  YYYAHRGGPRIQAKY-GSPEFVTQYMAL--------KQSASPKVKRNSIDWLITQYLESY 73

Query: 83  HWGSLAVNSRISFESYFDQIIRKSGDFDY----RKITTKHIRSGVESRKHTPSSAIQFLT 138
            + +L+  S+  ++ Y   I +K G        R       R    S +    +A   L 
Sbjct: 74  DFKALSDASKREYKRYLTLISQKFGKAPIDIATRNDAIAAYRQWHRSMQDKQRTANYALA 133

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR---PWTKEDMQQFKSFWSEGSQPRLA 195
            ++ L  WAV       NP   ++  KRK +  R    WTK+ +  F +    G   +  
Sbjct: 134 VLKKLMAWAVDSGNTTTNPTAQIKPIKRKGKSTRRDIIWTKDQINHFNTV--AGCHVKNP 191

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF 255
           F   L +  R  D           +   I+  KTG  + +++P+    +L       E  
Sbjct: 192 FNAALLTSQRKKDIIEMTWDAYDGDTIKIRQSKTGKDVWIKVPEELKCILDGLDRTHERV 251

Query: 256 FINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWK 314
           F+N+  Q      +   F+A    A VN  + H  R  + T++   GA+  E+    G  
Sbjct: 252 FLNSLGQPWTLDGYDSSFRAAKIAAKVNGVTFHDTRGTAVTLAYIGGASFREISLMSGHS 311

Query: 315 TVDQAETY-TKGADR 328
             +  E   T   +R
Sbjct: 312 EREVEEIINTHYLNR 326


>gi|119383712|ref|YP_914768.1| phage integrase family protein [Paracoccus denitrificans PD1222]
 gi|119373479|gb|ABL69072.1| phage integrase family protein [Paracoccus denitrificans PD1222]
          Length = 359

 Score =  225 bits (573), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 83/351 (23%), Positives = 140/351 (39%), Gaps = 19/351 (5%)

Query: 12  TKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
            + + R  K+I Y R    R           F+ A+     G    +           +L
Sbjct: 6   IRRQKRGDKVIRYHRATGIRLPDDIPETHPDFVSAWARCEAGQG--QPDAPKAPAPTGSL 63

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
                 +R S  +   +   R       + I  + G    + I  KHI + +     T  
Sbjct: 64  AAACIAFRGSPSFKEQSPVYRDILTRNIEAIRGEYGHVAIKAIKAKHISADLAKLAGTR- 122

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
             +  L + R +   A R   +  +P L+V+ PK K +G + WT+ D++ F+  W  G+ 
Sbjct: 123 -PLSRLKTWRKVMDHARRTGLIEEDPSLTVKAPKVKLKGHQVWTEGDIEVFRGKWKIGTV 181

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHL-QNNIFSIKTQKTGTIITVELPDGFMKLLAMTP- 249
            R  FE LL++  R  D+ R G QH+ ++ + S +  KTG +  V          A    
Sbjct: 182 QRACFELLLWTAARTVDAVRIGPQHVGKDGVLSFRQSKTGGMAYVPWTATLPNWGAGWAD 241

Query: 250 ------------IGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATI 296
                        G  TF      +  +    S    A A +A +  ++AHG+RK   T 
Sbjct: 242 ERREMMEALRCLAGGLTFLQARGARPRSEKGLSNLISAAAREAKLEGRTAHGLRKARLTR 301

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
            A+AG +AH + +  G KT+ +A  YT+ AD  RL     +  ++V  ++ 
Sbjct: 302 IAEAGGSAHAIKSWGGHKTLAEAAHYTESADAKRLVTGTEQEQNAVSPAER 352


>gi|119386436|ref|YP_917491.1| phage integrase family protein [Paracoccus denitrificans PD1222]
 gi|119377031|gb|ABL71795.1| phage integrase family protein [Paracoccus denitrificans PD1222]
          Length = 342

 Score =  224 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 84/345 (24%), Positives = 132/345 (38%), Gaps = 23/345 (6%)

Query: 6   RLPPFVTKERTRHGKIIYYFR-------KGHGRRIRLPY-PHESTFIPAYMSALTGSTPK 57
           +  P+VT +RT  GK  +Y+R       +   R I LP  P    F  AY S  +G++ +
Sbjct: 4   QRKPYVTLKRT-GGKARWYYRLTWFEGARRRERFIPLPDDPDSEEFDRAYWSIRSGTSEE 62

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK 117
            +     R K  T + L+  YR SA +  LA  ++ S+    + I+  + D     IT +
Sbjct: 63  VQ-----RPKKETWRQLVMAYRGSAGFRKLAPRTQKSYNDTIEWILSANADKAVSTITKQ 117

Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTK 176
            +R        TP  A   +  + +L  +A  Q E+   NP   +     K     PW +
Sbjct: 118 KLRDLHVKYGETPRKADMLVQMVSILVNFARTQLEWAVTNPAEGLT-LYGKQREYEPWPE 176

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
             ++            R A E +L +G R S +             ++  +K      + 
Sbjct: 177 WMVKAL---PDAPLVVRSAAELILGTGQRPSAAIVMRRDQFHGEWMTVTDEKGDESYEIF 233

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG---VNKSAHGVRKFS 293
            P      LA  P+  +     N  Q M        F+A  T  G      S HG+RK S
Sbjct: 234 CPQELRSYLASLPVAGQHVIPRNLTQPMRYDSVEKAFRAWRTDLGDRARPFSLHGLRKLS 293

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338
               A+AG T  E+ A    ++      Y K A+R +L      R
Sbjct: 294 IIRLAEAGCTDAEIQAITN-QSAQTVAYYRKRANRKKLSRAAMER 337


>gi|221641161|ref|YP_002527423.1| Integrase/recombinase [Rhodobacter sphaeroides KD131]
 gi|221161942|gb|ACM02922.1| Integrase/recombinase [Rhodobacter sphaeroides KD131]
          Length = 353

 Score =  222 bits (566), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 83/337 (24%), Positives = 147/337 (43%), Gaps = 23/337 (6%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
           P V + R R  +++ Y R    R   LP  H     P +++A   +   +  +  P    
Sbjct: 4   PRVQRIR-RGDRVLCYHRPTGTRLPDLPETH-----PEFVAAWAKAEATKPDLAPPVADK 57

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128
            ++  ++   R S  W   A + R+S   + ++I  + G    R +  KH+   ++  K 
Sbjct: 58  -SVAKVVRALRASKRWKGFAASYRLSLRFHLERIETEHGTLPLRGLRQKHVE--MDLGKL 114

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
            P+     L   R++F  A     +  +P   + +   K+ G   WT  ++  F++ W+ 
Sbjct: 115 DPNPRNVSLKCWRLIFAQAKADGIIESDPSHEIGKLVTKSPGHVAWTTAEVAAFRARWAV 174

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKL--- 244
           G++ R AFE L ++G R SD+CR    H+  + + + + QKTG +  V            
Sbjct: 175 GTRQRAAFELLAWTGCRVSDACRMTRTHIGSDGLMTFRQQKTGGLAYVPWTCALPSWALR 234

Query: 245 ---------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSA 294
                     A+      T    +  +  +    S +  A A +AG+  ++ HG+RKF  
Sbjct: 235 WEEERETVRAAVMATAGFTLLETSYGKARSVKGLSNFITAAAAEAGIEGRTPHGLRKFRL 294

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           T  A+AG  AH +MA  G  ++ +AE YT+ A R  L
Sbjct: 295 TAIAEAGGPAHAIMAWGGHASLSEAEAYTRAASRRGL 331


>gi|114766935|ref|ZP_01445855.1| Integrase [Pelagibaca bermudensis HTCC2601]
 gi|114540842|gb|EAU43904.1| Integrase [Roseovarius sp. HTCC2601]
          Length = 335

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 65/346 (18%), Positives = 123/346 (35%), Gaps = 16/346 (4%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63
              LP +V  +  R    +Y+ R G  +RI    P    F   Y   + G          
Sbjct: 2   KRNLPAYVYAKGKR--GYLYFIRSGVCQRIH-SEPGTPEFAADYAILMRGRV-------- 50

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
                  +  LI  + +S  W + A N+R  +E +   +   +G+ D  K+ T H+    
Sbjct: 51  -VAPKRNIGKLIELFMRSPKWANYAHNTRRGYERHLTYLRDTAGNIDPAKLRTVHVYEMR 109

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
           ++    P+ A + + ++  L  + ++  ++  NP   VER K      +PW  + +  F+
Sbjct: 110 DALADKPTDANRKIDTLVALLNYGIQIGWIDRNPAHGVERLKATGRKRKPWPVDLIDAFR 169

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
           +     +   L FE LL +G R +D        +  + F +   KT   + + L D    
Sbjct: 170 AEADGRT--LLIFEMLLGTGQRINDVLALRWSDMDGDGFQLTQGKTKAELYIPLTDRLRA 227

Query: 244 LLAMTPIGKETFFINNDKQKMNAT-QFSIWFKAKATKAGVNKSAHGVRKFSATISAD-AG 301
           +LA           + D  K++           +          H +R  +A+  A   G
Sbjct: 228 VLASQRRRGMFIICHEDGTKISYQLAHKDVMTVRKKIGADEYDIHALRYAAASEIAAIPG 287

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
            T   + A  G         Y   A +     +  +  +   ++  
Sbjct: 288 MTRDHIQAITGHADAAMIRRYAGAAVQKIRATEAQKARADRTNTKR 333


>gi|77462207|ref|YP_351711.1| integrase/recombinase [Rhodobacter sphaeroides 2.4.1]
 gi|77386625|gb|ABA77810.1| Integrase/recombinase [Rhodobacter sphaeroides 2.4.1]
          Length = 348

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 80/329 (24%), Positives = 142/329 (43%), Gaps = 22/329 (6%)

Query: 17  RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76
           R  +++ Y R    R   LP  H     P +++A   +   +  +  P     ++  ++ 
Sbjct: 6   RGDRVLCYHRPTGTRLPDLPETH-----PDFIAAWAKAEASKPDLAPPVADK-SVAKVVR 59

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF 136
             R S  W   A + R++   + ++I  + G    R +  KH+   ++  K  P+     
Sbjct: 60  ALRASKRWKGFAASYRLNLRFHLERIETEHGALPLRGLRQKHVE--MDLGKLDPNPRNVS 117

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196
           L   R++F  A     +  +P   + +   K+ G   WT  ++  F++ W+ G++ R AF
Sbjct: 118 LKCWRLIFAQAKADGIIESDPSHEIGKIVTKSPGHVAWTTAEVAAFRARWAVGTRQRAAF 177

Query: 197 EFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKL----------- 244
           E L ++G R SD+CR    HL  + + + + QKTG    V                    
Sbjct: 178 ELLAWTGCRVSDACRMTRTHLGSDGLMTFRQQKTGGPAYVPWTCALPSWALRWEEERETV 237

Query: 245 -LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGA 302
             A+      T    +  +  +    S +  A A +AG+  ++ HG+RKF  T  A+AG 
Sbjct: 238 RAAVMATAGFTLLETSYGKARSVKGLSNFITAAAAEAGIEGRTPHGLRKFRLTAIAEAGG 297

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRL 331
            AH +MA  G  ++ +AE YT+ A R  L
Sbjct: 298 PAHAIMAWGGHASLSEAEAYTRAASRRGL 326


>gi|126464049|ref|YP_001045162.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17029]
 gi|126105860|gb|ABN78390.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17029]
          Length = 360

 Score =  219 bits (557), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 68/351 (19%), Positives = 121/351 (34%), Gaps = 23/351 (6%)

Query: 10  FVTKERTRHGKI-IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
              K R   GK+ ++Y+    G +I    P    F                    P    
Sbjct: 5   HKVKRRLVSGKVAVHYYAWRGGPKIEA-EPDSPEF-------RAAYDAAHAARQKPVHHD 56

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128
            TL+ LI+ Y+++  +  LA  ++  +  +  QI  + GD   + +    +R      + 
Sbjct: 57  GTLQALITAYQQTPAFTVLAPTTKAGYIRHIRQIEAEFGDMPLKALADPRVRGEFLDWRD 116

Query: 129 T-----PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
                   SA    + + ++  WA  +  +  NPC    R    +     WT+  +  F 
Sbjct: 117 RLGQKSKRSADYAFSVLALILAWAYDRRKIPSNPCEKPGRLYAGSRADDIWTESQIAAFL 176

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
               +    RL F   +++G R +D  +         +  +K  KTG  + + +     +
Sbjct: 177 DKAPK--PVRLPFLLAIWTGQRQADILKLTWSAYDGQVIRLKQSKTGRHMVIPVARQLRE 234

Query: 244 LLAMTPIGK--ETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADA 300
            L      +   T    +  Q   +  F   F      AG+   + H +R  + T  A A
Sbjct: 235 ALDAAKARRKTLTICETSRGQPWTSDGFKTSFGKAQAAAGIEGVTFHDLRGTAVTFLALA 294

Query: 301 GATAHELMATYGWKTVDQAETYTK---GADRIRLGIKNSRRISSVVDSDDP 348
           G +  E+ A  G    D     +K   G DR RLG     ++        P
Sbjct: 295 GCSVPEIAALTGHSLKDAEAILSKHYLGRDR-RLGESAVAKLERHGLGTKP 344


>gi|254471175|ref|ZP_05084577.1| site-specific recombinase, phage integrase family [Pseudovibrio sp.
           JE062]
 gi|211959321|gb|EEA94519.1| site-specific recombinase, phage integrase family [Pseudovibrio sp.
           JE062]
          Length = 426

 Score =  217 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 79/335 (23%), Positives = 125/335 (37%), Gaps = 21/335 (6%)

Query: 16  TRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75
            +HGK+  Y RK          P  S    A+++     T      ++ R  P TL  LI
Sbjct: 14  DQHGKLRCYHRKTGEPINLEKAPIGS---AAFLAECERLTNLMSVADTSR--PGTLGNLI 68

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSA 133
            +YR S+ +  LA  ++  ++  FD +     +    + T+  I    +    +     A
Sbjct: 69  DKYRASSAFLELADRTKSDYQKVFDYL-APIHNTPLTRFTSPFIVKLRDKAEEQRKRRFA 127

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVE---RPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
                 + VLF W   + +V  NP L V+   +PK      RPWT ++            
Sbjct: 128 NYVKQVLSVLFSWGKERGFVKENPALGVKSIRKPKNAPIANRPWTDDERGIVLKHAPPQM 187

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250
            P  A   ++Y+GL   D+     Q  QN   S +  KTG  +   +       L   P 
Sbjct: 188 VP--ALTLMMYTGLGPQDALTLSKQQYQNGFISTRRAKTGAPVFWPVIAPLKAALDDAPD 245

Query: 251 -GKETFFINNDKQKMNATQFSIWFKAKATKA------GVNKSAHGVRKFSATISADAGAT 303
            G  T   N+  Q    + F   ++    +           + +G+R   ATI  + G  
Sbjct: 246 HGAPTLCTNSRGQPWTVSGFRASWRKLRIQLEDKNLIKPGLTLYGLRHTVATILREIGLN 305

Query: 304 AHELMATYGWKTVDQAETYTKGAD-RIRLGIKNSR 337
             +L A  G +T   A  Y KGAD R  +     R
Sbjct: 306 DRDLAAALGHETEAMARLYAKGADLRKSMSDIAVR 340


>gi|146279095|ref|YP_001169254.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17025]
 gi|145557336|gb|ABP71949.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17025]
          Length = 361

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 66/344 (19%), Positives = 132/344 (38%), Gaps = 26/344 (7%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLP----YPHESTFIPAYMSALTGSTPKREYINSP 64
           P +  E+       Y  R   GR+ ++               Y +A  G         + 
Sbjct: 6   PGLWAEKLPSASTRYRVR-AEGRKTKVTVIPVATDHPDVWDHYRAARAGEKWTGPATKT- 63

Query: 65  RKKPTTLKWLISEYRKS----AHWGSLAVNSRISFESYFDQIIR-------KSGDFDYRK 113
                +++WL+ +Y          G  +  +    +S   ++           G++D + 
Sbjct: 64  TAVAHSIEWLVEKYLAHLARVVEAGQASPLTLRQRKSQLRRMCAMPTDDGGTYGEYDMQA 123

Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIR 172
             +  I +  +  +H P+ A   + S+  +++WA+ + E    NP   + +  R   G  
Sbjct: 124 PRSA-IIAARDQWRHKPAEADNLIKSISAMYRWAIDEAEIATGNPAAGIGKLNRGGGGAA 182

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQK 228
           P T ED+++F++    G+   L     +++  R  D+ + G  +            +  K
Sbjct: 183 PRTAEDLKKFRAKHPLGTTAHLWLTLQMFTACRIDDARKLGRGNEVERAGALWIEFQPGK 242

Query: 229 TGT-IITVELPDGFMKLLAMTPIGKETFFINNDKQKM-NATQFSIWFKAKATKAGV-NKS 285
            G+  ++V L    +K      +   T+ + +  +    A       +     AG+  KS
Sbjct: 243 KGSAPVSVPLLPQLLKATRAQKVQGATYLLTDYGRPFSTAESLRNRVRKWCAAAGIEGKS 302

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           +HG+RK    + A+AG T H++MA         +E YTKG +R 
Sbjct: 303 SHGIRKAMGELLAEAGCTQHQIMAIMAHTKAKTSEIYTKGVERR 346


>gi|260427090|ref|ZP_05781069.1| phage integrase family protein [Citreicella sp. SE45]
 gi|260421582|gb|EEX14833.1| phage integrase family protein [Citreicella sp. SE45]
          Length = 357

 Score =  217 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 81/362 (22%), Positives = 148/362 (40%), Gaps = 34/362 (9%)

Query: 5   LRLPPFVTKERTRHGKIIYYFRKGH--GRRIRLP-YPHESTFIPAYMSALTGSTPKREYI 61
           ++ P +V ++  R G+ ++  R      RR+ +P  P +  F   Y +A  G +P  E +
Sbjct: 3   VQFPGYVPEK--RGGRTLHRVRVKGNAARRVTIPVGPEDPQFSALYHAARRGESP--EVV 58

Query: 62  NSPRKKPTTLKWLISEYR-------KSAHWGSLAVNSRISFESYFDQIIRKSG------- 107
                   +L  L+  Y        +      L    R S       +   SG       
Sbjct: 59  KQSLAPAMSLDALVDAYLELLESDVRHGQASRLTHRQRKSLLKRACDMPDDSGTGRMGAL 118

Query: 108 DFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167
             D   +  +HI +   +R    + A   + ++R  +    R +++  NPC+ ++R  R 
Sbjct: 119 HCDLPPVALRHIIAQWGART---AQADNTIKALRAAYD---RMDWLDANPCVGIKRVHRS 172

Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH-LQNN---IFS 223
             G  PW+  D+Q F     +G+  R+     L++G R SD  + G  + ++ +      
Sbjct: 173 KGGTTPWSTGDVQAFMKAHPQGTSARVWLMLALFTGARLSDLAKLGRANEVRRDGMTWIE 232

Query: 224 IKTQKTGTIIT-VELPDGFMKLLAMTPIGKETFFINNDKQKM-NATQFSIWFKAKATKAG 281
            +  K G+  T + +     + +  T +   T+ +N   Q   N    +   +     AG
Sbjct: 233 WQPSKRGSSHTSMPMAPQLAEAVRATGVIGRTYILNQQGQPFANGPVLAERVRRWTADAG 292

Query: 282 VN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
           +  +S+HG+RK    I ADAGAT H++M+     +   +  YTK A R RL  +    I 
Sbjct: 293 LERRSSHGLRKALGGILADAGATEHQIMSVLSHASPTTSAIYTKSAQRARLAGEAMASIR 352

Query: 341 SV 342
            +
Sbjct: 353 GL 354


>gi|220922881|ref|YP_002498183.1| integrase family protein [Methylobacterium nodulans ORS 2060]
 gi|219947488|gb|ACL57880.1| integrase family protein [Methylobacterium nodulans ORS 2060]
          Length = 351

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 79/343 (23%), Positives = 140/343 (40%), Gaps = 25/343 (7%)

Query: 10  FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
            V + R RHGK   Y R        +  P+ +    A ++ L G   K+E   +      
Sbjct: 9   GVKRYRDRHGKWRNYHRATGKP---IKAPYGTAEFAAEVAELNGLVSKKEPPRN-----G 60

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RK 127
           TL+ ++ EY+ +  +  LA+ +R  +E YF+ I +   D   + I +  +    +    K
Sbjct: 61  TLRGVMDEYKTTPAFADLAMATRAGYERYFE-IAKPLHDVPIQSIDSAGLSVIRDKVAMK 119

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR---KTEGIRPWTKEDMQQFKS 184
               +A   L+ + VLF +A+ ++YV  NP   V+R KR   K +  RPW+ E+ +   +
Sbjct: 120 RGWRTANYMLSVLSVLFGFAIERKYVTQNPAFVVKRAKRDKTKPKANRPWSLEERKAVLA 179

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
                S  ++     +++G+R  D+       ++    +  T KTG  I + +     ++
Sbjct: 180 EAP--SHLKVPLALAMFTGVRKRDALTLRKDAIRGGAIA--TSKTGEEIFIRIHPELAEI 235

Query: 245 LA-MTPIGKETFFINNDKQKMNATQF---SIWFKAKATKAG---VNKSAHGVRKFSATIS 297
           LA   P    T    +       T F      FK K    G      + HG+R       
Sbjct: 236 LAGAPPHAAPTIAATSRGTPWTETGFNSVWDKFKDKLEAEGRVRPGLTIHGLRHTLGGHL 295

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
           ADAG     +    G KT+  A+ Y++   +     +   R+ 
Sbjct: 296 ADAGCDLDTIRRVLGQKTLTMAQLYSERVKKEAATKEAMERMD 338


>gi|254476067|ref|ZP_05089453.1| phage integrase family protein [Ruegeria sp. R11]
 gi|214030310|gb|EEB71145.1| phage integrase family protein [Ruegeria sp. R11]
          Length = 335

 Score =  213 bits (542), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 67/334 (20%), Positives = 112/334 (33%), Gaps = 23/334 (6%)

Query: 17  RHGKIIYYFRKGHGRRIRLPY-PHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75
           RH     YFRK     +R+      + F   Y   +TG               T+   LI
Sbjct: 11  RHPSGRIYFRKTGMSLVRIHAAEGTADFDREYWDIMTGK---------KWAAKTSFAALI 61

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQ 135
            +YR+S  W  L   +R  +E     I  K G+ D R  T     +  ++  H    A  
Sbjct: 62  LDYRESDRWTGLKPRTRSDYEKVLSYIEEKIGNRDVRAFTRPDAIAAQKANAHRTRFANY 121

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPK---RKTEGIRPWTKEDMQQFKSFWSEGSQP 192
            +  + VL + A+   +V  NP   V+  K    K +   PW    +  F+       Q 
Sbjct: 122 IVQILVVLMEHAIDIGWVKENPAKGVKALKTPEHKKKQHLPWPDWAVDLFRE--KVTGQA 179

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT---- 248
           RL FE  + +  R  D              +++  KT   + +       + L +     
Sbjct: 180 RLIFEIGVGTVQRPGDWIAFCWGDYDGENLALRQNKTDKPLILPCTRQLKEALDLQRAGL 239

Query: 249 ---PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATA 304
              PI      +     +M+    +     +  + G+     H +R       A AG   
Sbjct: 240 GTIPIAAHPILMTQGGGRMSYRYMAQIMLKERKRLGLEAYDLHALRYRGVMELAWAGCDD 299

Query: 305 HELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338
            E+ +  G  T +    Y   A +I    + S +
Sbjct: 300 DEIASYSGHATKEMIAKYAGEARQIMRARQASEK 333


>gi|307317617|ref|ZP_07597056.1| integrase family protein [Sinorhizobium meliloti AK83]
 gi|306896775|gb|EFN27522.1| integrase family protein [Sinorhizobium meliloti AK83]
          Length = 400

 Score =  212 bits (541), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 72/370 (19%), Positives = 129/370 (34%), Gaps = 37/370 (10%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPY-PHESTFIPAYMSALTGSTPKREYINSPRKK 67
           P +T      G   + +R    +   +P  P +  F   Y   + G   K E +  P   
Sbjct: 13  PGITLFVDHRGTTRWRYRSKTIKGKLMPGNPGDEEFEKEYKLLVEGEPKKAEVVELPDAA 72

Query: 68  -PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR---------KSGDFDYRKITTK 117
            P T +        +  W  L   ++        + +            GD     +   
Sbjct: 73  LPQTFRAAWKALTSTQDWADLDPATKSKQSRNAKEFLDLPIVPGKEGTWGDVPVNDMDDD 132

Query: 118 HIRSGVESR------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE-- 169
            +             K TPS        ++ +F +A ++++   +P   V+  +   +  
Sbjct: 133 DLEKIKLRLSVDSKGKPTPSKPWHVKVVLKKIFFYARKRKWRQDDPTDLVKWKRGGAKNG 192

Query: 170 ---GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-----NNI 221
              G +PW  E  QQF++    GS  R  +   L+ G R  D  R     L+     +  
Sbjct: 193 GYVGWKPWPWELRQQFEARHPIGSAARTCYALALFIGNRRGDVARLRWTDLKLVPFEDEW 252

Query: 222 FSI-------KTQKTGTIITV-ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF 273
             +       K Q    +  +  L     + L   P  KE   +N      +    +   
Sbjct: 253 IYVFDYIQNKKVQNDDDMRQIRPLSRMLSEALEPLPRDKEFVLLNGYGVPFSEKSLTGMM 312

Query: 274 KAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
                +AG+ K  + HG+RK      A+AGA+  +     G  T+D+   Y KGA ++RL
Sbjct: 313 AHWTHQAGMPKGYTLHGLRKSYGGDLAEAGASEMQQKDMLGHTTLDEVVNYAKGASKLRL 372

Query: 332 GIKNSRRISS 341
            ++ +RR+  
Sbjct: 373 TVEGTRRLEE 382


>gi|163737550|ref|ZP_02144967.1| phage integrase [Phaeobacter gallaeciensis BS107]
 gi|161389076|gb|EDQ13428.1| phage integrase [Phaeobacter gallaeciensis BS107]
          Length = 343

 Score =  212 bits (539), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 59/349 (16%), Positives = 116/349 (33%), Gaps = 24/349 (6%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYP-HESTFIPAYMSALTGSTPKREYINSPR 65
           LP +V  +R      + + R+  G  + +        F   Y   L G+           
Sbjct: 6   LPKYVYNDR----GYLRFIRRSRGISVMMHEEAGTPEFWDHYNRLLKGNPAPAPVRR--- 58

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
                 + LI  Y +S  +  L   +R  +  Y   I     + D  +I T HI     +
Sbjct: 59  ----NFEALILSYYESDPYKKLKPRTRSDYRRYISHIREIWAEKDPARIETHHIYELHRA 114

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAI---NPCLSVERPKRKTEGIRPWTKEDMQQF 182
                  A   +  M VL   A    ++     NP   +   K++++G  PW  +   +F
Sbjct: 115 NADHWRQANYLVQVMVVLMNHARLIGFIKKEHGNPAKGIPLFKQQSDGWEPWPDDVRAEF 174

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
           ++  S+  + RL +E  + +G R  D  +   +H  +  F     KT   + + L +   
Sbjct: 175 EALASK--RARLVYELCVGTGQRIGDVVKMKWEHFSDEGFDFTQGKTDKPLWIPLTNRLK 232

Query: 243 KLLAMTPIGKETFFINNDKQKMNA----TQFSIWFKAKATKAGVNKSAHGVRKFSATISA 298
             L        T   +   + ++      +     +    +       HG+RK +     
Sbjct: 233 THLEGIARTDGTVVTDAKDRPVSYRIVAEEMRTIKRKMKHEKASYYKTHGLRKNATIELY 292

Query: 299 DAGATAHELMATYGWKTVDQAETY---TKGADRIRLGIKNSRRISSVVD 344
            AG     + A  G   V+  + Y    +  +  +   +   ++     
Sbjct: 293 LAGCDDEMVKAVTGHSGVEMLKKYGGPIRQRELAKRAQEARNQMERSKT 341


>gi|332186170|ref|ZP_08387916.1| phage integrase family protein [Sphingomonas sp. S17]
 gi|332013985|gb|EGI56044.1| phage integrase family protein [Sphingomonas sp. S17]
          Length = 367

 Score =  212 bits (539), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 68/338 (20%), Positives = 121/338 (35%), Gaps = 29/338 (8%)

Query: 20  KIIYYFRKGHGRRIRLPY-------PHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           +  YY+ +G G    L         P    F+ +Y +A+      R           TL+
Sbjct: 20  RATYYYLRGSGALNPLEGDEDQPFAPGTPAFMRSYYAAIDAPRRAR--------TAGTLQ 71

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYR-----KITTKHIRSGVESRK 127
            +I  Y KS  +  LA  ++  + +   +I  K G          KI  + +    E  K
Sbjct: 72  SVIDAYEKSPQFTKLAPRTQRDYGTALLKISDKFGTHPLAVVEDPKIRIRFLEWRDEMAK 131

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            +P  A   L  +R++ +W   + ++  N     ++  R     + W   D++  ++  S
Sbjct: 132 SSPRQADAVLGVLRIVLEWGRDRGHLIHNHATRPKKVYRADRADKLWLPADIEALRAVAS 191

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
              + RLAFE  L +G R  D               ++  K    + + +      LL  
Sbjct: 192 P--EIRLAFELALGTGQRKGDLLALTWSSYDGQRIQLRQAKRKRFVDMPVTRSLKALLDA 249

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHE 306
            P    T     + +   +  F   ++    +AG N    H +R  + T+ A AGAT  E
Sbjct: 250 QPRTAATIL-TRNGKPWGSVNFDHRWRETVLQAGRNGLHFHDLRGTACTVLAQAGATPSE 308

Query: 307 LMATYGW---KTVDQAETYTKGADRIRLGIKNSRRISS 341
           + A  GW         + Y   A    L      ++ +
Sbjct: 309 IAAMLGWTVSTVARMLDLY--QAMTASLSDSAVAKLEA 344


>gi|126461390|ref|YP_001042504.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17029]
 gi|126103054|gb|ABN75732.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17029]
          Length = 389

 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 59/237 (24%), Positives = 101/237 (42%), Gaps = 6/237 (2%)

Query: 109 FDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168
             +  +  +H+         TP  A + L  +  L   AV+ E    NP   V+R K  +
Sbjct: 131 LQHAPMRVRHVMEIKAGLSATPQKAKKTLKRLSQLMDLAVKLEMRGDNPVKGVDRYKTGS 190

Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
            G   WT+ ++ +F   +  G+   L+   +LYSG    D+ + G  +++      + QK
Sbjct: 191 GGFHAWTEAEIARFFEVYLPGTPAFLSMTLMLYSGASRCDAVKLGWGNIRGGRLEYRRQK 250

Query: 229 T-----GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
           T     G ++++ +     + L   P G  TF      +   AT      +    KAG+ 
Sbjct: 251 TRKNPEGILVSIPVHPFLAEALQAVPNGAFTFLQTEQGKSRTATGLGTAMRKWCDKAGLP 310

Query: 284 -KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
             S+HG+RK      A+AG  AHE+M+  G  T+ +A+ Y +   R  L      R+
Sbjct: 311 LCSSHGLRKAICRRIAEAGGEAHEIMSVSGHITLAEAQRYCEDFGRKGLADSAIARL 367


>gi|254719515|ref|ZP_05181326.1| integrase/recombinase protein [Brucella sp. 83/13]
          Length = 290

 Score =  208 bits (530), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 51/253 (20%), Positives = 106/253 (41%), Gaps = 9/253 (3%)

Query: 37  YPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFE 96
                 F   Y   L G   ++  +   R +P +++WL+  Y +S  + S +  ++   +
Sbjct: 10  GSITQAFTEEYHRVLAGGRGEK-AVPISRLEPGSVRWLVETYYRSKAFQSQSPATQKDKK 68

Query: 97  SYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAIN 156
           S  ++     G+  ++KI    I +    R  TP +A + +  ++ LF WA+  E     
Sbjct: 69  SVLNRYCLNVGELPFKKIRKSDIEASQMKRSGTPGAADKLVKYLKALFNWAISAELATFT 128

Query: 157 PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216
           P   V +   ++ G   W++ ++ ++++ +  GS  RLA E +L  G+R SD  + G ++
Sbjct: 129 PANGVTKI-HQSPGFHTWSEAELARYRAAYPLGSMARLAMELMLNLGVRRSDLVKLGWRN 187

Query: 217 LQNNIFSIKTQKTG----TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW 272
           L  +      +K        +++ + D   + L      + TF I    +  +   F   
Sbjct: 188 LVGDRIEFMPEKGSGKYAQSLSLPVTDELREALDAITHDQPTFLITEYGKAFSGNGFGNK 247

Query: 273 FKAK---ATKAGV 282
            +        AG+
Sbjct: 248 MRQWVQRCRFAGM 260


>gi|170742031|ref|YP_001770686.1| integrase family protein [Methylobacterium sp. 4-46]
 gi|168196305|gb|ACA18252.1| integrase family protein [Methylobacterium sp. 4-46]
          Length = 349

 Score =  208 bits (530), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 60/336 (17%), Positives = 117/336 (34%), Gaps = 21/336 (6%)

Query: 20  KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYR 79
           +  +Y  KG  R      P    F+ +Y +A+      ++           L  LI  ++
Sbjct: 21  RTYWYAWKGGPRLE--GEPGTPEFMASYNTAVARRVETKQ---------GVLLSLIQGFQ 69

Query: 80  KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT-----PSSAI 134
            S  +      +R  +  +   I ++ GDF    +T +  R    + +          A 
Sbjct: 70  ASDSFLGKEPRTRADYVRHIKVIEQEFGDFPLGALTDRRTRGEFLTWRDRLAVRSRRQAD 129

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
              + +  +  WA+ +  +  NPC    R  R +   + WT +D ++F +         L
Sbjct: 130 YAWSVLARILSWALDRGLILANPCERGGRLYRASRTDKVWTDDDERRFLASAPAHLH--L 187

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254
                L++G R  D  R            +K  KTG  + + +       L   P     
Sbjct: 188 PLILALWTGQRQGDLLRLPWSAYDGETVRLKQGKTGARVVIPVGAPLRAALDAAPRVSPV 247

Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGW 313
             +N++ +      F   +      AG+   + H +R  + +  A AG +  E+    G 
Sbjct: 248 ILVNSEGRPWTGDGFRSSWGKACRAAGIRGLTFHDLRGTAVSRLALAGCSEAEIATLTGH 307

Query: 314 KTVDQAETY-TKGADRI-RLGIKNSRRISSVVDSDD 347
              D          +R   L +   R++ + ++S D
Sbjct: 308 SLRDVRSILDAHYLNRDPALALAAVRKLETRMNSPD 343


>gi|85708305|ref|ZP_01039371.1| putative integrase [Erythrobacter sp. NAP1]
 gi|85689839|gb|EAQ29842.1| putative integrase [Erythrobacter sp. NAP1]
          Length = 351

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 71/350 (20%), Positives = 119/350 (34%), Gaps = 31/350 (8%)

Query: 12  TKERTRHGKII-YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
            K+R   GK + YY+    G R+    P    FI +Y +AL                P  
Sbjct: 11  VKKRLASGKTVTYYYAWKGGPRLE-GEPGSPKFIESYNAALATRFTTP---------PDQ 60

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---- 126
           L+ ++ +Y+ S  +  LA  +R  ++ +   I  + GDF    +  +  R    +     
Sbjct: 61  LRSILKQYQASHSFTDLADRTRQDYKKHLRTIEAEYGDFPIEALADRRTRGEFLAWRERL 120

Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
            K++   A      +  +  WA  + +  +NPC    R  R T   + WT ED Q+F   
Sbjct: 121 AKNSRRQADYAYAVLARVLSWASNRGFAPLNPCERPGRLYRSTRSTKVWTAEDEQRFYKH 180

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
                   L     L++G R  D               +  QKT   + +         L
Sbjct: 181 APRHLH--LPLLMALWTGQRQGDLLALRWSAYDGQYLRLTQQKTKVRVQIPAGKPLKAEL 238

Query: 246 AMTP----------IGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSA 294
                                +N       A  F   ++    +AG+ + + H +R  + 
Sbjct: 239 DALREARTKPANELAANSHILLNTRHSPWTAAGFRASWRKACKQAGIEDLTFHDLRGTAV 298

Query: 295 TISADAGATAHELMATYGWKTVDQAETY-TKGADR-IRLGIKNSRRISSV 342
           T  A AG T  E+    G    D      +   DR   LG    R++  +
Sbjct: 299 TRLAIAGCTIPEIATITGHSLKDVGTILDSHYLDRNSALGESAIRKLEDL 348


>gi|77465633|ref|YP_355136.1| putative integrase [Rhodobacter sphaeroides 2.4.1]
 gi|77390051|gb|ABA81235.1| putative integrase [Rhodobacter sphaeroides 2.4.1]
          Length = 373

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 65/345 (18%), Positives = 120/345 (34%), Gaps = 23/345 (6%)

Query: 10  FVTKERTRHGKI-IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
              + +   G+  +Y++    G RI    P  + F+                 + P    
Sbjct: 18  HRVRRKLASGETAVYHYAWRGGPRIDA-APGSAEFV-------AAYNAAHAARDRPVHHD 69

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128
            TL+ LI+ Y+K+  +  LA  +R  +  +  QI    GD   + +    +R      + 
Sbjct: 70  GTLQALITAYQKTPAFTDLAEATRKGYIRHIRQIEADFGDMPVQALADPRVRGEFLDWRD 129

Query: 129 T-----PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
                   SA    + +  +  WA  +  + +NPC    R    +     WT+  +  F 
Sbjct: 130 RLAQKSKRSADYAFSVLARILSWAHDRRKIPVNPCEKPGRLYTGSRADSIWTEAQIAAFL 189

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
           +        RL F   +++G R +D  +            ++  KTG  + + +     +
Sbjct: 190 AVAPR--PVRLPFLLAIWTGQRQADILQLTWTAYDGQAIRLRQSKTGRHMLIPVAQPLRE 247

Query: 244 LLAMTPIGKE--TFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADA 300
            +      +   T    +  Q   +  F   F      AG+   + H +R  + T  A A
Sbjct: 248 AMEEAKARRRTLTICETSRGQPWTSDGFKTSFGKAQASAGIEGVTFHDLRGTAVTFLALA 307

Query: 301 GATAHELMATYGWKTVDQAETYTK---GADRIRLGIKNSRRISSV 342
           G +  E+ A  G    D     +K   G DR RLG     ++   
Sbjct: 308 GCSVPEIAALTGHSLKDAEGILSKHYLGRDR-RLGESAVAKLEKH 351


>gi|46205283|ref|ZP_00209783.1| COG0582: Integrase [Magnetospirillum magnetotacticum MS-1]
          Length = 300

 Score =  207 bits (528), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 63/234 (26%), Positives = 111/234 (47%), Gaps = 6/234 (2%)

Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
           +R   +SR+ TP++A   L ++R LF WAV  +    +P   V+R +  ++G   W+  +
Sbjct: 1   MRQMRDSRRGTPAAANTLLKALRALFSWAVEHDLAPGDPTREVKRVRYASKGHHSWSLTE 60

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----IT 234
           ++ +++    G++ RLA   LLY+  R  D  R G +H+          K        + 
Sbjct: 61  VEAYEAVHPLGTKARLALALLLYTAGRREDVVRLGPRHVSAGRMRYVQAKNEHRAPVAMD 120

Query: 235 VELPDGFMKLLA-MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKF 292
           + +     + +A + P    +F   +  +  +   F   FK    +A + + SAHG RK 
Sbjct: 121 IPIHPDLAEAIASVPPSSCPSFLETDYGRSFSPNGFGNRFKEWCIQAALPHCSAHGCRKA 180

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346
           +A   A+ GAT H++MA  G +T+++ E YT+ A R RL       +     SD
Sbjct: 181 TAARLAERGATPHQIMAITGHRTLEEVERYTREAQRARLADDAMALLPRRSGSD 234


>gi|126461447|ref|YP_001042561.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17029]
 gi|126103111|gb|ABN75789.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17029]
          Length = 363

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 67/345 (19%), Positives = 134/345 (38%), Gaps = 26/345 (7%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLP----YPHESTFIPAYMSALTGST-PKREYINS 63
           P +  E+   G   Y  R   GR+  +      P    F+  Y +   G           
Sbjct: 6   PGLWAEKMPSGATRYRVR-AEGRKTVITLIPVGPDHPDFLSHYSAGRQGEKWAGPATAPQ 64

Query: 64  PRKKPTTLKWLISEYRKS----AHWGSLAVNSRISFESYFDQIIR-------KSGDFDYR 112
           P+    +++WL+  Y             ++ +     S   +            G++D+R
Sbjct: 65  PKAVTHSIQWLVGRYLTHLESLVEAKLASLLTLRQRRSQLRRFCEMPTEDGGTYGEYDFR 124

Query: 113 KITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGI 171
              +  I +  +  +H P  A   + S+  +++WA+ + E    NP   +++  +   G 
Sbjct: 125 APRSA-IIAARDQWRHKPGEADNLVKSISAMYRWAIDEAEIATENPAAGIKKLNKGGGGA 183

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQ 227
             WT +D+++F+     G+   L     +++  R  D+ + G  +  +         +  
Sbjct: 184 AAWTADDLKRFREAHPFGTTAHLWLTLQMFTACRIDDARKLGRSNEIDRGGTLWLEFQPG 243

Query: 228 KTGT-IITVELPDGFMKLLAMTPIGKETFFINNDKQKM-NATQFSIWFKAKATKAGV-NK 284
           K G+  +++ +    +K      +   T+ +    +    A       +     AG+  K
Sbjct: 244 KKGSAPVSIPMLPPLLKAARAQKVQGATYLLTAAGKPFSTAESLRNRVQKWCAAAGIEGK 303

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           S+HG+RK +A + A+AG T H++MA         +E YTKGA R 
Sbjct: 304 SSHGIRKAAAELLAEAGCTQHQIMALMAHTQAKTSEIYTKGAQRR 348


>gi|220922617|ref|YP_002497919.1| integrase family protein [Methylobacterium nodulans ORS 2060]
 gi|219947224|gb|ACL57616.1| integrase family protein [Methylobacterium nodulans ORS 2060]
          Length = 421

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 67/352 (19%), Positives = 131/352 (37%), Gaps = 27/352 (7%)

Query: 11  VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
           +  +RT  G    +    H RR  LP P     + A+  AL  +  + +  ++  +K  T
Sbjct: 56  LDAQRTDAGWTWAWVAPSH-RRHPLPDPRAEGGMEAFWRALDTAAEREKLGDAEDRK--T 112

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
              LI+ YR+ A +  L+  ++  +E +   I    GD     +TT   +  ++S + TP
Sbjct: 113 FAALIALYREHAIYTKLSALTQRDYERHLRLIAEFWGDDPVADLTTVDAQKAIDSFQATP 172

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           + A  F   +  L  + + + +   N   + E+   + +   PW     + F      G 
Sbjct: 173 AVARYFRAVLSRLIAFGIPRGFATANVVEATEKVAHEVDPHEPWPDWAFETFFEHARVGL 232

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250
              L     LY+G R  D        +  N   +  +KTG  + V +   + ++L  T +
Sbjct: 233 H--LPVYSALYTGQRSIDVIPMHRPAVGANAIEMIARKTGAAVYVPIHSEYREILTRTHV 290

Query: 251 GKETFFINNDKQKMNATQF-SIWFKAK--------------ATKAGVNK------SAHGV 289
                 +  D        + + W +                A KA + +        HG+
Sbjct: 291 DHPALHLREDGTPWTLGAYRTAWQRDFTSINAKGQPTTASPAKKAAMQRLREGGFVFHGL 350

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
           RK +  +  + G T  E+ A     +      Y +  ++ RL +   +++  
Sbjct: 351 RKNAVNMLLETGCTEAEVSAIV-EMSEQMVRHYARDVNKRRLAVNAMKKLEE 401


>gi|153009120|ref|YP_001370335.1| phage integrase family protein [Ochrobactrum anthropi ATCC 49188]
 gi|151561008|gb|ABS14506.1| phage integrase family protein [Ochrobactrum anthropi ATCC 49188]
          Length = 361

 Score =  206 bits (524), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 79/340 (23%), Positives = 131/340 (38%), Gaps = 30/340 (8%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKGHG-----RRIRLP-YPHESTFIPAYMSALTGSTPK 57
           ++ LP  V +  +R GK  +Y++ G G      R++LP  PH   F  A   A   S P 
Sbjct: 10  TVSLPKGVHRVVSR-GKEYFYYQTGRGTNHVGERVKLPNDPHSPEFWQAVRQAQGISGP- 67

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHW----GSLAVNSRISFESYFDQIIRKSGDFDYRK 113
                       T+  LI  Y   A W      LAV++   +      + +  GD     
Sbjct: 68  --------VVDGTIGALIDAY--EAAWPGLPRKLAVSTTEQYRRQLRIVRKVWGDLQAEA 117

Query: 114 ITTKHIRSGVES-RKHTPSSAIQFLTSMRVLFKWAVR-QEYVAINPCLSVERPKRKTEGI 171
           +   H+++ +E     TP +A   L ++R + +WA   +E +  +P   V    ++ EG 
Sbjct: 118 LRPSHVQALMEKIGATTPGAANNLLDALRAMCRWASGPRELLGRDPTQGVAHF-QQGEGH 176

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
           +PWT + +  F      G   R A+    Y+G R SD  R G   +    FS+  +KTG 
Sbjct: 177 KPWTPDQL-AFADKNFTGMLHR-AYVLARYTGQRISDVVRLGWNDIDEGGFSLPQKKTGV 234

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGV 289
                +       +A        F   ++ +         W     T   V  +   HG+
Sbjct: 235 RPWCPIFPELESEMAKWEKRPGPFLYQDNGKPFTTNLMWKWLNDARTGQPVIEDVVWHGL 294

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           R  +       G +A ++    G  +    E Y++ ADR 
Sbjct: 295 RANAVIRLRQDGFSAPQICDAVG-MSPQMVERYSRYADRK 333


>gi|325292872|ref|YP_004278736.1| integrase family protein [Agrobacterium sp. H13-3]
 gi|325060725|gb|ADY64416.1| integrase family protein [Agrobacterium sp. H13-3]
          Length = 346

 Score =  205 bits (522), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 72/342 (21%), Positives = 126/342 (36%), Gaps = 22/342 (6%)

Query: 12  TKERTRHGKIIYY-FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
            K+    GK IYY +    G    L         P      +      +   +P   PT 
Sbjct: 12  VKKTLTSGKTIYYCYAWRGGPL--LKNDKGEPIQPGDHLIKSAFRRAHDERRAP--SPTD 67

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR----SGVESR 126
           L  LI+ YR S+ +    + +R  ++ Y D+I  +       ++     R       +S 
Sbjct: 68  LSSLITLYRGSSDFRRTKLGTRHEYDRYLDKIRMQFDRLSLEELQQPSTRGAFKEWRDSL 127

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             TP +A      +  +  +A  +  +++N      R  R T   R W+  D+  F++  
Sbjct: 128 ADTPRTADFAWMVLVRVLSFAKDRGMISVNIAERGGRLYRSTRRDRTWSDADVAAFEAVA 187

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
              SQ RLA +  L++G R  D  R                KT   + V +  G++  + 
Sbjct: 188 P--SQMRLAIQLALWTGQRKGDLLRLSWCDFDGANLRFIQSKTKARVLVPM--GYLADVL 243

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAH 305
            +  G       +      +  F+  ++    KAG+ + + H +R  + T  A AG T  
Sbjct: 244 CSQKGTGAILRTSRGSAWTSAGFNTSWRKCCAKAGITDLTFHDLRGTAITRMALAGCTVP 303

Query: 306 ELMATYGWKTVDQAE-----TYTKGADRIRLGIKNSRRISSV 342
           E+ A  G  ++   E      Y  G  R  L     R++ +V
Sbjct: 304 EIAAVTGH-SLKDVEAILDMHYLGG--RTELAASAMRKMVAV 342


>gi|323136790|ref|ZP_08071871.1| integrase family protein [Methylocystis sp. ATCC 49242]
 gi|322398107|gb|EFY00628.1| integrase family protein [Methylocystis sp. ATCC 49242]
          Length = 357

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 65/326 (19%), Positives = 121/326 (37%), Gaps = 21/326 (6%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYP-HESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
           + RHG+   Y RK         +P   + FI      +       +   +P++KP  L  
Sbjct: 13  KDRHGRWRCYHRKSRTPIDLARFPLGSAEFIAECARIVA-----LKEAQTPKEKPGALGM 67

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--TPS 131
           LI +YR S  +  L+  ++  ++ +FD +     D    +     +    +         
Sbjct: 68  LICDYRASPAFLDLSARTQADYQKHFDYLR-PIADTPLARFDRPLVVRIRDKAAAAKGRR 126

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVE---RPKRKTEGIRPWTKEDMQQFKSFWSE 188
                  ++ V+F W   + Y+A NP   ++   RPK   +  RPW+  +          
Sbjct: 127 FGNYLKATLSVVFGWGRERGYLADNPASGIKAIRRPKGAPDANRPWSDAERHAVLDAAPA 186

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248
              P  A   ++ +GL   D+      H ++   + K  KTG  +   +P+    +L   
Sbjct: 187 HMLP--AIALMMMTGLGPKDALALPRNHWRDGEIATKRAKTGEPVFWPVPEPLDAILRAA 244

Query: 249 PI-GKETFFINNDKQKMNATQFSIWFKAKATKA------GVNKSAHGVRKFSATISADAG 301
           P     T   ++  +      F   ++    +       G   + +G+R   A I  +AG
Sbjct: 245 PRHDAVTLCASSTGRPWTLDGFRASWRTLRLRLEAQGAIGPGLTLYGLRHTVAVILREAG 304

Query: 302 ATAHELMATYGWKTVDQAETYTKGAD 327
                +    G KT++ A  Y +GAD
Sbjct: 305 FDERTIADALGQKTIEMARRYARGAD 330


>gi|119385147|ref|YP_916203.1| phage integrase family protein [Paracoccus denitrificans PD1222]
 gi|119374914|gb|ABL70507.1| phage integrase family protein [Paracoccus denitrificans PD1222]
          Length = 307

 Score =  199 bits (506), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 64/306 (20%), Positives = 105/306 (34%), Gaps = 21/306 (6%)

Query: 41  STFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD 100
           S F   Y   L G  P     N         K L   Y +S  +  L   ++  ++ Y +
Sbjct: 2   SAFWDHYNRRLKGREPLPTKRN--------FKTLRLSYVESDAFKHLKPRTKRDYQKYME 53

Query: 101 QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI---NP 157
            II   GD D RKI T HI    ++       A   +    VL   A    ++     NP
Sbjct: 54  HIISIWGDLDPRKIETHHIYKLHQANADHWRQANYLVQVFVVLLNHARLIGFLKKEHGNP 113

Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217
              +   K+  +G  PW  E   +F+       +PRL +E  +  G R  D+ +    H+
Sbjct: 114 AKGIPLFKQPGDGWEPWPDEVRAEFEELAPP--RPRLVYELSIGLGQRIGDTHKIRWDHI 171

Query: 218 QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKA 277
           ++  +     KT   + V L +     L+       T     D +  +    +   +   
Sbjct: 172 KDGEYDFTQGKTDKPLLVPLTNRLAAYLSTVKKEGLTIVCGRDGRPADYRTVTEEMRK-- 229

Query: 278 TKAGVNKS------AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            KA +          HG+RK +      AG     + A  G   V+  + Y     +  L
Sbjct: 230 IKAAMKHPETQRYVTHGLRKNATIELYQAGCDDEMVKAVTGHSGVEMLKKYGGRVRQREL 289

Query: 332 GIKNSR 337
             +   
Sbjct: 290 ARRAQD 295


>gi|221369617|ref|YP_002520713.1| Phage integrase family protein [Rhodobacter sphaeroides KD131]
 gi|221162669|gb|ACM03640.1| Phage integrase family protein [Rhodobacter sphaeroides KD131]
          Length = 350

 Score =  197 bits (500), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 65/332 (19%), Positives = 114/332 (34%), Gaps = 22/332 (6%)

Query: 22  IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKS 81
           +Y++    G RI    P    F+                 + P     TL+ LI+ Y+K+
Sbjct: 8   VYHYAWRGGPRIDA-APGSPEFV-------AAYNAAHAARDRPVHHDGTLQALITAYQKT 59

Query: 82  AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT-----PSSAIQF 136
             +  LA  +R  +  +  QI    GD   + +    +R      +         SA   
Sbjct: 60  PAFTDLAEATRKGYIRHIRQIEADFGDMPVQALADPRVRGEFLDWRDRLAQKSKRSADYA 119

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196
            + +  +  WA  +  + +NPC    R    +     WT+  +  F +        RL F
Sbjct: 120 FSVLARILSWAHDRRKIPVNPCEKPGRLYAGSRADSIWTEAQIAAFLAAAPR--PVRLPF 177

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL--AMTPIGKET 254
              +++G R +D  +            ++  KTG  + + +       +  A       T
Sbjct: 178 LLAIWTGQRQADILQLSWTAYDGKAIRLRQSKTGRHMLIPVAQPLRDAMEEARARRRTLT 237

Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGW 313
               +  Q   +  F   F      AG+   + H +R  + T  A AG +  E+ A  G 
Sbjct: 238 ICETSRGQPWTSDGFKTSFGKAQASAGIEGVTFHDLRGTAVTFLALAGCSVPEIAALTGH 297

Query: 314 KTVDQAETYTK---GADRIRLGIKNSRRISSV 342
              D     +K   G DR RLG     ++   
Sbjct: 298 SLKDAEGILSKHYLGRDR-RLGESAVAKLERH 328


>gi|254418822|ref|ZP_05032546.1| site-specific recombinase, phage integrase family protein
           [Brevundimonas sp. BAL3]
 gi|196184999|gb|EDX79975.1| site-specific recombinase, phage integrase family protein
           [Brevundimonas sp. BAL3]
          Length = 362

 Score =  196 bits (497), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 72/361 (19%), Positives = 143/361 (39%), Gaps = 24/361 (6%)

Query: 1   MTPS-LRLP-PFVTKERTRHGKI-IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPK 57
           MTP+ ++LP     K R    ++ IY++R+  G  + + +  ++    A  + + G    
Sbjct: 1   MTPAAIKLPGAHRVKMRLAGDRVGIYWYRRRGGPLL-MKFTGDT-LGDALRAEIAGQQDL 58

Query: 58  REYINSPRKKP----TTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYR 112
            +   +P  +P     T++ +++ ++ +   + SL  ++R  +    D+++ + GD   R
Sbjct: 59  IDAYATPTARPEPSVITVREIVTRFKAAPDGYLSLRDSTRKVWAPMLDRVVDEFGDLPAR 118

Query: 113 KITTKHIR----SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168
            +  K +R       +    TP SA   +  ++ +  + V +E    NP L V    +  
Sbjct: 119 ALNAKGMRRAIIDWRDRYAATPRSADYGVQVLKRVLNFGVDRELCETNPALGVGTIYKNN 178

Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
              +    E++    +  S     RLA      +G+R  D        + +        K
Sbjct: 179 RADQIIEPEELTAILANLSPA--ARLAVRLSAATGMRRGDLVDLRWSEVSDVSIERAAGK 236

Query: 229 TGTIITVELP------DGFMKLLAMTPIGK--ETFFINNDKQKMNATQFSIWFKAKATKA 280
           +   + + +P      D   +L  +    K   TF + + K   +    +  F   A KA
Sbjct: 237 STNGVRIMVPLIREARDVLTELRQIRDSAKVTSTFVLTSRKGPWHGDGLTSLFVRAAAKA 296

Query: 281 GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
           GV KS H +R  +AT    AG    E+   +GW+     +   +  DR R+      R+ 
Sbjct: 297 GVKKSLHDLRGTAATRFVIAGLKDEEIADIFGWEPDRVRKIRVRYVDRARVAQGIITRLE 356

Query: 341 S 341
            
Sbjct: 357 R 357


>gi|326387303|ref|ZP_08208913.1| hypothetical protein Y88_1353 [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326208484|gb|EGD59291.1| hypothetical protein Y88_1353 [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 303

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 56/296 (18%), Positives = 106/296 (35%), Gaps = 12/296 (4%)

Query: 57  KREYINSPRKKP-TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT 115
           K E   SP K    TL  ++  YR+S  +  LA +++  +  + D+I  K G        
Sbjct: 9   KAEKARSPTKGALATLDDVLDRYRQSPEFSKLAESTKRDYRLWLDRISEKFGQAPIAAFE 68

Query: 116 TKHIR----SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
            + +R        +    P +A +   +M  +  WA  +  + +N    + +     +  
Sbjct: 69  DQRMRTEIIDWRNTWADQPRTADKASVTMATVLGWAQGEGILPVNIATGIRQLHHVNKAD 128

Query: 172 RPWTKEDMQQFKSFWSEGSQPR------LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225
           + W     +  +    +  +         A      +GLR  D  R   + +      + 
Sbjct: 129 QIWEDRHWEAMRGSKDKNGRSLYSDHLDRALRLASLTGLRLGDLVRVAWEDVGEKAIILT 188

Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS 285
           T+K      + +      LL     G      N+  +    +     F  KA   G +++
Sbjct: 189 TRKRKGRAIIPILPDLRGLLDSIGTGAGPILRNSRGEPWTESGLGSVF-QKAKPDGFDRT 247

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
            H +R   AT  A  G T  E+  T GW     +E  ++  D  R+ +    R+S+
Sbjct: 248 MHDLRGTYATWLAMRGLTDEEIARTIGWTAKRISEIRSRYVDEARVIVSMVERLSA 303


>gi|146277418|ref|YP_001167577.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17025]
 gi|145555659|gb|ABP70272.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17025]
          Length = 336

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 64/346 (18%), Positives = 118/346 (34%), Gaps = 25/346 (7%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63
            +   P+V + +      +Y++R G              F   Y   ++G   +      
Sbjct: 3   KIGRKPYVRETKP---GFVYFYRGGKYLHRFTAPEGTEEFDRQYWEVMSGKKQE------ 53

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
                 +    I   R+S  W + ++  R   E   + +  K G  D  ++T   I   +
Sbjct: 54  ---AKRSWGAAIEVLRQSDRWAAKSLRYRQDLEPVLEYLGEKIGKRDVARLTQADIYEAM 110

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE---GIRPWTKEDMQ 180
           +  KH    A     ++ ++ K  +R+ ++  NP   +ER K   E      PW    + 
Sbjct: 111 DRNKHRVRFANYIPVAISMIAKEVIRRRWLEDNPAKGIERLKVPKERQRPHVPWPDAAVV 170

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP-- 238
           +F++    G   RL FE  + +  R SD           +   ++  KTG  + +     
Sbjct: 171 KFRA--EAGDLERLIFEIGVGTVQRPSDWIGFRWGDYDGDSLVLRQGKTGKPLVLPCTVA 228

Query: 239 -----DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKF 292
                D     L   P+         D  +M+  + +    A+  + G+     H +R  
Sbjct: 229 LKAALDKAKAALPFAPMPSRHIITKQDGSRMDYRRLAEIMLAERARLGLEAYDLHALRYR 288

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338
                A AG    E+MA  G  T      Y   A +I    +   +
Sbjct: 289 GVMELAWAGCDDDEIMAYSGHSTKAMVRKYAGEARQIMRARQARGK 334


>gi|222147672|ref|YP_002548629.1| phage-related integrase [Agrobacterium vitis S4]
 gi|221734660|gb|ACM35623.1| phage-related integrase [Agrobacterium vitis S4]
          Length = 349

 Score =  191 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 59/344 (17%), Positives = 115/344 (33%), Gaps = 19/344 (5%)

Query: 12  TKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
            K++   G  + YF    G       P +  F+ AY +A++     +           TL
Sbjct: 17  VKKKLADGTPVTYFYAWKGGPPLPGKPGDPEFMAAYNAAISRKVEPQ---------AGTL 67

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR-----SGVESR 126
           + +++ ++ S+ W  LA  ++  +      I ++ G F    +  +  +        E  
Sbjct: 68  QSILNAFQVSSDWDDLAPRTKSDYVKLIKVIEKEFGTFPISGLKNRRAKSIFLSWRDERA 127

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
           + +   A      +  +  WA+ +  +  NPC    R  + +     WT +D   F +  
Sbjct: 128 RASRRQADYGWQVLARILSWALGRGLIEANPCEKGGRLYQGSRAEFVWTGDDEANFLASA 187

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
                  L      ++G R  D               +K  KTG  + + +      +L 
Sbjct: 188 PPHLHLALILAL--WTGQRQGDLLALTWPQYDGERIRLKQGKTGARVVIPVGGPLKAMLD 245

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG-VNKSAHGVRKFSATISADAGATAH 305
                     +  D     +  FS  ++     AG V  + + +R  + T  A AG T  
Sbjct: 246 PIRQKVGHVLLTLDGTPWTSGGFSSSWRKACAAAGVVGVTFNDLRGTAVTRLALAGCTEA 305

Query: 306 ELMATYGWKTVDQAETY-TKGADRI-RLGIKNSRRISSVVDSDD 347
           E+    G    D      +   +R   LG    R++       +
Sbjct: 306 EIATISGHSLRDVRSILDSNYLNRDPELGENAIRKLEGRTKFPN 349


>gi|126464099|ref|YP_001045212.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17029]
 gi|126105910|gb|ABN78440.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17029]
          Length = 360

 Score =  191 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 68/345 (19%), Positives = 119/345 (34%), Gaps = 23/345 (6%)

Query: 10  FVTKERTRHGKI-IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
              + R   GKI +Y++    G RI    P    F+                 + P    
Sbjct: 5   HRVRRRLASGKIAVYHYAWRGGPRIDA-APGSPEFV-------AAYNAAHAARDRPAHHD 56

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128
            TL+ LI+ Y+K+  +  LA  +R  +  +  QI    GD   + +    +R      + 
Sbjct: 57  GTLQALITAYQKTPAFTDLAEATRKGYIRHIRQIEADFGDMPVQALADPRVRGEFLDWRD 116

Query: 129 T-----PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
                   SA    + +  +  WA  +  + +NPC    R    +     WT+  +  F 
Sbjct: 117 RLAQKSKRSADYAFSVLARILSWAHDRRKIPVNPCEKPGRLYTGSRADSIWTEAQIAAFL 176

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
           +        RL F   +++G R +D  +            ++  KTG  + + +     +
Sbjct: 177 AAAPR--PVRLPFLLAIWTGQRQADILQLTWTAYDGKAIRLRQSKTGRHMLIPVAQPLRE 234

Query: 244 LL--AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADA 300
            +  A       T    +  Q   +  F   F      A +   + H +R  + T  A A
Sbjct: 235 AMEEARARRRTLTICETSRGQAWTSDGFKTSFGKAQAAARIEGVTFHDLRGTAVTFLALA 294

Query: 301 GATAHELMATYGWKTVDQAETYTK---GADRIRLGIKNSRRISSV 342
           G +  E+ A  G    D     +K   G DR RLG     ++   
Sbjct: 295 GCSVPEIAALTGHSLKDAEGILSKHYLGRDR-RLGESAVAKLERH 338


>gi|13476600|ref|NP_108170.1| integrase [Mesorhizobium loti MAFF303099]
 gi|14027362|dbj|BAB53631.1| integrase [Mesorhizobium loti MAFF303099]
          Length = 343

 Score =  189 bits (479), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 64/319 (20%), Positives = 116/319 (36%), Gaps = 23/319 (7%)

Query: 10  FVTKERTRHGKII-YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
              K +   G    YY+    G +I    PH   F   Y         K + + +P+   
Sbjct: 9   HKVKRKLADGSTRVYYYAWRGGPKIEAK-PHTEAFALEY--------AKLKALATPKIVE 59

Query: 69  TTLKWLISEY-----RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI---- 119
            TL+ LI  +     +++  + +LA  ++      F  I  K      R    K +    
Sbjct: 60  -TLETLIDRFTGPEDKRNPDFLALADTTQTDHLYAFRLIKEKWPKLPVRLTQQKGMKAEI 118

Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
           R    S    P  A + L S+  +F +AV  E +  NPC  +ER    +     W++E +
Sbjct: 119 RKWHRSFAANPRKADKLLFSLSKVFSYAVADELIDKNPCTGIERLYNGSRRESVWSQEQI 178

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239
           + F++         LAFE  L++G R  D      +         +  K G  + V +  
Sbjct: 179 KAFRAGAPA--HLLLAFEMALHTGQRQGDLLSRSWKDYDGIYLQFRQSKGGKKLKVRVHS 236

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISA 298
               +L +    K    +N+ K+      F   +  + T+  +   + H +R    T  A
Sbjct: 237 KLKAMLDVLDKDKMRILLNSRKRPWTKDGFKTSWGKECTRLQIEGVTFHDLRGTFITERA 296

Query: 299 DAGATAHELMATYGWKTVD 317
             G++  ++    G    +
Sbjct: 297 REGSSVEDIAKISGHSISE 315


>gi|77462513|ref|YP_352017.1| integrase/recombinase [Rhodobacter sphaeroides 2.4.1]
 gi|77386931|gb|ABA78116.1| Possible integrase/recombinase [Rhodobacter sphaeroides 2.4.1]
          Length = 296

 Score =  188 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 55/281 (19%), Positives = 116/281 (41%), Gaps = 20/281 (7%)

Query: 68  PTTLKWLISEYRKS----AHWGSLAVNSRISFESYFDQIIR-------KSGDFDYRKITT 116
             +++WL+  Y             ++ +     S   +            G++D+R   +
Sbjct: 2   THSIQWLVGRYLTHLESLVEAKLASLLTLRQRRSQLRRFCEMPTEDGGTYGEYDFRAPRS 61

Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWT 175
             I +  +  +H P  A   + S+  +++WA+ + E    NP + +++  +   G   WT
Sbjct: 62  A-IIAARDQWRHKPGEADNLVKSISAMYRWAIDEAEIATENPAVGIKKLNKGGGGAAAWT 120

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGT 231
            +D+++F+     G+   L     +++  R  D+ + G  +  +         +  K G+
Sbjct: 121 ADDLKRFREAHPFGTTAHLWLTLQMFTACRIDDARKLGRSNEIDRGGTLWLEFQPGKKGS 180

Query: 232 -IITVELPDGFMKLLAMTPIGKETFFINNDKQKM-NATQFSIWFKAKATKAGV-NKSAHG 288
             +++ +    +K      +   T+ +    +    A       +     AG+  KS+HG
Sbjct: 181 APVSIPMLPPLLKAARAQKVQGATYLLTAAGKPFSTAESLRNRVQKWCAAAGIEGKSSHG 240

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           +RK +A + A+AG T H++MA         +E YTKGA R 
Sbjct: 241 IRKAAAELLAEAGCTQHQIMALMAHTQAKTSEIYTKGAQRR 281


>gi|209550058|ref|YP_002281975.1| integrase family protein [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209535814|gb|ACI55749.1| integrase family protein [Rhizobium leguminosarum bv. trifolii
           WSM2304]
          Length = 345

 Score =  187 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 71/333 (21%), Positives = 121/333 (36%), Gaps = 25/333 (7%)

Query: 21  IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRK 80
             YY  +G G       P    F   Y+  LT    K         +  T+  LI E+RK
Sbjct: 22  TYYYAWRGKGAPRMHAKPGTKAFTQEYVR-LTREREKA-------SEDGTIGSLIDEFRK 73

Query: 81  SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS----GVESRKHTPSSAIQF 136
           +A +  LA ++R  +E  F  I  K   F  + I  +  R       ++ + +P SA   
Sbjct: 74  TAGYMKLAASTRRDYERQFAMIRLKFEGFPIKAIEARGSRRIFLNWRDTMRDSPRSADMH 133

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196
           +  +  LF WA   E +  NP   VER    T     WT + + +  +        R   
Sbjct: 134 IALLSRLFSWAKGNEVILRNPLEEVERLHSGTRKDIIWTDDQLAKLLT--EGVPHLRNVA 191

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-ELPDGFMKLLAMTPIGKETF 255
              L++  R +D              SI+  KTG  + V   PD    L       ++  
Sbjct: 192 LVALWTMQRQADILSMPTLAFDGERVSIRQGKTGARVRVMAAPDILPVLKDAKTTSRQRV 251

Query: 256 FINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHE-----LMA 309
            +N+  Q   ++ F   ++ +  + G+   + H +R  + T +      AH+     +  
Sbjct: 252 LVNSFGQNWTSSGFRASWRKEMARLGIKGVTFHDLRGTAITFAYANLDKAHDEKIKLISE 311

Query: 310 TYGWKTVDQA----ETYTKGADRIRLGIKNSRR 338
             G    D      + Y  G D I    + +++
Sbjct: 312 ISGHSQDDAESIIRKHYLAGQDVIDAISRGTKK 344


>gi|163737292|ref|ZP_02144710.1| Integrase [Phaeobacter gallaeciensis BS107]
 gi|161389896|gb|EDQ14247.1| Integrase [Phaeobacter gallaeciensis BS107]
          Length = 370

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 73/353 (20%), Positives = 120/353 (33%), Gaps = 26/353 (7%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           + RHGK   Y R+   +   +           + +         E   +   K  TL  L
Sbjct: 13  KDRHGKQRCYHRETGHK---VDLTDAPIGSAKFFAECETIRAIAEAQRAKAPKAGTLGGL 69

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSS 132
           I  Y ++ H+ +LA  +R  +    D  +    D     I T  I    +   +K     
Sbjct: 70  IQSYFETEHYQNLAEATRRDYRKCAD-FLEPIRDTPIHVIDTPLIAGIHDKAAKKIGWRR 128

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSV---ERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
           A    T +  +F++ + +  ++ N    V    RP+ +    RPWT E+           
Sbjct: 129 ANMVRTLLSEVFRYNIPKGLISANFAKDVIPKRRPRDRAYANRPWTIEERDTVLGKAKP- 187

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP 249
              R+A   ++ +GL  SD+ R     +          KTG  + + +       L   P
Sbjct: 188 -HVRVALALMMNTGLDPSDALRLRNDQVDGGTIWGVRGKTGEEVAIPVSPTLQAALNRMP 246

Query: 250 I-GKETFFINNDKQKMNATQF---SIWFKAKATKAGV---NKSAHGVRKFSATISADAGA 302
               ET   N+  +      F      FK      G+     +  G+R   AT   +AG 
Sbjct: 247 NHDAETVLSNSRGEAWTYNGFSTVWHRFKTALENEGLIEKGLTLKGLRHTVATTLREAGL 306

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIR--------LGIKNSRRISSVVDSDD 347
               +    G KT   A  Y++ A+           L  +N RR  SV  S  
Sbjct: 307 DERRIADLLGQKTPSMARHYSRSANLANKNRETMATLEEENRRRAESVKPSQK 359


>gi|294852313|ref|ZP_06792986.1| hypothetical protein BAZG_01235 [Brucella sp. NVSL 07-0026]
 gi|294820902|gb|EFG37901.1| hypothetical protein BAZG_01235 [Brucella sp. NVSL 07-0026]
          Length = 341

 Score =  186 bits (472), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 63/341 (18%), Positives = 119/341 (34%), Gaps = 24/341 (7%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
           +    G+  YY  +G G  +R   P  + F+ +   A        +    P       + 
Sbjct: 11  KVNAKGRTYYYAWRG-GPALR-GEPGSAEFMDSLQEA-------NDSWVIPDASK--FRA 59

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT-----TKHIRSGVESRKH 128
           +I+ Y+ S  +  LA +++ ++  + D+I +K GD    +          IR        
Sbjct: 60  VITAYKSSHDYQKLADSTKRNWNGWLDRIGKKFGDLSIAQFDLPQKIRPVIRKWRGEFAD 119

Query: 129 TPSSAIQFLTSMRVLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            P +A   +  +  +  +AV     ++ NPC  +++  +       WT +D+ + K+  S
Sbjct: 120 KPRTADYGMQVLSRVLSYAVDPLGKISQNPCEGIKQLYKNDRAAIIWTDQDIARLKTKCS 179

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDGFMKLL 245
              +   A +   ++GLR  D  R    H+ +N   + T K+       + L      LL
Sbjct: 180 P--EVAWAVDLAAHTGLRAGDLLRLSWSHITDNAIILPTGKSRHTKEAVIPLYAELRALL 237

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAGA 302
              P        N  K       F   F     +A +   +   H  R   AT    AG 
Sbjct: 238 QTIPRRSPIVLTNTRKAPWTVNGFGSSFSDCREEAKLGDRDLHFHDFRGTVATKFYIAGL 297

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343
           +   +    GW+         +   R    +   ++I    
Sbjct: 298 SERVIAEIMGWEEETVRNIIRRYVSRTAAIVATIKQIDEAR 338


>gi|23501849|ref|NP_697976.1| phage integrase family site specific recombinase [Brucella suis
           1330]
 gi|62289895|ref|YP_221688.1| phage integrase family site specific recombinase [Brucella abortus
           bv. 1 str. 9-941]
 gi|82699825|ref|YP_414399.1| phage integrase [Brucella melitensis biovar Abortus 2308]
 gi|161618919|ref|YP_001592806.1| hypothetical protein BCAN_A0980 [Brucella canis ATCC 23365]
 gi|163843233|ref|YP_001627637.1| hypothetical protein BSUIS_A1008 [Brucella suis ATCC 23445]
 gi|189024139|ref|YP_001934907.1| Phage integrase [Brucella abortus S19]
 gi|225627444|ref|ZP_03785481.1| phage integrase family site specific recombinase [Brucella ceti
           str. Cudo]
 gi|237815396|ref|ZP_04594394.1| phage integrase family site specific recombinase [Brucella abortus
           str. 2308 A]
 gi|254697338|ref|ZP_05159166.1| Phage integrase [Brucella abortus bv. 2 str. 86/8/59]
 gi|254706834|ref|ZP_05168662.1| Phage integrase [Brucella pinnipedialis M163/99/10]
 gi|254730236|ref|ZP_05188814.1| Phage integrase [Brucella abortus bv. 4 str. 292]
 gi|256061062|ref|ZP_05451218.1| Phage integrase [Brucella neotomae 5K33]
 gi|256159686|ref|ZP_05457439.1| Phage integrase [Brucella ceti M490/95/1]
 gi|256254954|ref|ZP_05460490.1| Phage integrase [Brucella ceti B1/94]
 gi|260168683|ref|ZP_05755494.1| Phage integrase [Brucella sp. F5/99]
 gi|260545355|ref|ZP_05821096.1| phage integrase [Brucella abortus NCTC 8038]
 gi|260566487|ref|ZP_05836957.1| phage integrase [Brucella suis bv. 4 str. 40]
 gi|260757928|ref|ZP_05870276.1| conserved hypothetical protein [Brucella abortus bv. 4 str. 292]
 gi|260761751|ref|ZP_05874094.1| conserved hypothetical protein [Brucella abortus bv. 2 str.
           86/8/59]
 gi|261222140|ref|ZP_05936421.1| conserved hypothetical protein [Brucella ceti B1/94]
 gi|261314300|ref|ZP_05953497.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
 gi|261325065|ref|ZP_05964262.1| conserved hypothetical protein [Brucella neotomae 5K33]
 gi|261758160|ref|ZP_06001869.1| phage integrase [Brucella sp. F5/99]
 gi|265998104|ref|ZP_06110661.1| conserved hypothetical protein [Brucella ceti M490/95/1]
 gi|23347786|gb|AAN29891.1| site-specific recombinase, phage integrase family [Brucella suis
           1330]
 gi|62196027|gb|AAX74327.1| site-specific recombinase, phage integrase family [Brucella abortus
           bv. 1 str. 9-941]
 gi|82615926|emb|CAJ10939.1| Phage integrase [Brucella melitensis biovar Abortus 2308]
 gi|161335730|gb|ABX62035.1| Hypothetical protein BCAN_A0980 [Brucella canis ATCC 23365]
 gi|163673956|gb|ABY38067.1| Hypothetical protein BSUIS_A1008 [Brucella suis ATCC 23445]
 gi|189019711|gb|ACD72433.1| Phage integrase [Brucella abortus S19]
 gi|225617449|gb|EEH14494.1| phage integrase family site specific recombinase [Brucella ceti
           str. Cudo]
 gi|237790233|gb|EEP64443.1| phage integrase family site specific recombinase [Brucella abortus
           str. 2308 A]
 gi|260096762|gb|EEW80637.1| phage integrase [Brucella abortus NCTC 8038]
 gi|260156005|gb|EEW91085.1| phage integrase [Brucella suis bv. 4 str. 40]
 gi|260668246|gb|EEX55186.1| conserved hypothetical protein [Brucella abortus bv. 4 str. 292]
 gi|260672183|gb|EEX59004.1| conserved hypothetical protein [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260920724|gb|EEX87377.1| conserved hypothetical protein [Brucella ceti B1/94]
 gi|261301045|gb|EEY04542.1| conserved hypothetical protein [Brucella neotomae 5K33]
 gi|261303326|gb|EEY06823.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
 gi|261738144|gb|EEY26140.1| phage integrase [Brucella sp. F5/99]
 gi|262552572|gb|EEZ08562.1| conserved hypothetical protein [Brucella ceti M490/95/1]
          Length = 341

 Score =  186 bits (472), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 62/341 (18%), Positives = 119/341 (34%), Gaps = 24/341 (7%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
           +    G+  YY  +G G  +R   P  + F+ +   A           +      +  + 
Sbjct: 11  KVNAKGRTYYYAWRG-GPALR-GEPGSAEFMASLQEA---------NDSRVIPDASKFRA 59

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT-----TKHIRSGVESRKH 128
           +I+ Y+ S  +  LA +++ ++  + D+I +K GD    +          IR        
Sbjct: 60  VITAYKSSHDYQKLADSTKRNWNGWLDRIGKKFGDLSIAQFDLPQKIRPVIRKWRGEFAD 119

Query: 129 TPSSAIQFLTSMRVLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            P +A   +  +  +  +AV     ++ NPC  +++  +       WT +D+ + K+  S
Sbjct: 120 KPRTADYGMQVLSRVLSYAVDPLGKISQNPCEGIKQLYKNDRAAIIWTDQDIARLKTKCS 179

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDGFMKLL 245
              +   A +   ++GLR  D  R    H+ +N   + T K+       + L      LL
Sbjct: 180 P--EVAWAVDLAAHTGLRAGDLLRLSWSHITDNAIILPTGKSRHTKEAVIPLYAELRALL 237

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAGA 302
              P        N  K       F   F     +A +   +   H  R  +AT    AG 
Sbjct: 238 QTIPRRSPIVLTNTRKAPWTVNGFGSSFSDCREEAKLGDRDLHFHDFRGTAATKFYIAGL 297

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343
           +   +    GW+         +   R        ++I    
Sbjct: 298 SERVIAEIMGWEEETVRNIIRRYVSRTAAIEATIKQIDEAR 338


>gi|256044630|ref|ZP_05447534.1| phage-related integrase [Brucella melitensis bv. 1 str. Rev.1]
 gi|265991056|ref|ZP_06103613.1| conserved hypothetical protein [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|263001840|gb|EEZ14415.1| conserved hypothetical protein [Brucella melitensis bv. 1 str.
           Rev.1]
          Length = 341

 Score =  185 bits (470), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 61/341 (17%), Positives = 119/341 (34%), Gaps = 24/341 (7%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
           +    G+  YY  +G G  +R   P  + F+ +   A           +      +  + 
Sbjct: 11  KVNAKGRTYYYAWRG-GPALR-GEPGSAEFMASLQEA---------NDSRVIPDASKFRA 59

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT-----TKHIRSGVESRKH 128
           +I+ Y+ S  +  LA +++ ++  + D+I +K GD    +          IR        
Sbjct: 60  VITAYKSSHDYQKLADSTKRNWNGWLDRIGKKFGDLSITQFDLPQKIRPVIRKWRGEFAD 119

Query: 129 TPSSAIQFLTSMRVLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            P +A   +  +  +  +AV     ++ NPC  +++  +       WT +D+ + K+  S
Sbjct: 120 KPRTADYGMQVLSRVLSYAVDPLGKISQNPCEGIKQLYKNDRAAIIWTDQDIARLKTKCS 179

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDGFMKLL 245
              +   A +   ++GLR  D  R    H+ +N   + T K+       + L      LL
Sbjct: 180 P--EVAWAVDLAAHTGLRAGDLLRLSWSHITDNAIILPTGKSRHTKEAVIPLYAELRALL 237

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAGA 302
              P        N  K       F   F     +A +   +   H  R  +AT    AG 
Sbjct: 238 QTIPRRSPIVLTNTRKAPWTVNGFGSSFSDCREEAKLGDRDLHFHDFRGTAATKFYIAGL 297

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343
           +   +    GW+         +   +        ++I    
Sbjct: 298 SERVIAEIMGWEEETVRNIIRRYVSKTAAIEATIKQIDEAR 338


>gi|256369391|ref|YP_003106899.1| site-specific recombinase, phage integrase family [Brucella microti
           CCM 4915]
 gi|255999551|gb|ACU47950.1| site-specific recombinase, phage integrase family [Brucella microti
           CCM 4915]
          Length = 341

 Score =  185 bits (470), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 62/341 (18%), Positives = 119/341 (34%), Gaps = 24/341 (7%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
           +    G+  YY  +G G  +R   P  + F+ +   A           +      +  + 
Sbjct: 11  KVNAKGRTYYYAWRG-GPALR-GEPGSAEFMASLQEA---------NDSRVIPDASKFRA 59

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT-----TKHIRSGVESRKH 128
           +I+ Y+ S  +  LA +++ ++  + D+I +K GD    +          IR        
Sbjct: 60  VITAYKSSHDYQKLADSTKRNWNGWLDRIGKKFGDLSIAQFDLPQKIRPVIRKWRGEFAD 119

Query: 129 TPSSAIQFLTSMRVLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            P +A   +  +  +  +AV     ++ NPC  +++  +       WT +D+ + K+  S
Sbjct: 120 KPRTADYGMQVLSRVLSYAVDPLGKISQNPCEGIKQLYKNDRAAIIWTDQDIARLKTKCS 179

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDGFMKLL 245
              +   A +   ++GLR  D  R    H+ +N   + T K+       + L      LL
Sbjct: 180 P--EVAWAVDVAAHTGLRAGDLLRLSWSHITDNAIILPTGKSRHTKEAVIPLYAELRALL 237

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAGA 302
              P        N  K       F   F     +A +   +   H  R  +AT    AG 
Sbjct: 238 QTIPRRSPIVLTNTRKAPWTVNGFGSSFSDCREEAKLGDRDLHFHDFRGTAATKFYIAGL 297

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343
           +   +    GW+         +   R        ++I    
Sbjct: 298 SERVIAEIMGWEEETVRNIIRRYVSRTAAIEATIKQIDEAR 338


>gi|225852471|ref|YP_002732704.1| phage-related integrase [Brucella melitensis ATCC 23457]
 gi|256264035|ref|ZP_05466567.1| phage integrase [Brucella melitensis bv. 2 str. 63/9]
 gi|225640836|gb|ACO00750.1| phage-related integrase [Brucella melitensis ATCC 23457]
 gi|263094221|gb|EEZ18098.1| phage integrase [Brucella melitensis bv. 2 str. 63/9]
 gi|326408987|gb|ADZ66052.1| phage-related integrase [Brucella melitensis M28]
          Length = 341

 Score =  185 bits (470), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 61/341 (17%), Positives = 119/341 (34%), Gaps = 24/341 (7%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
           +    G+  YY  +G G  +R   P  + F+ +   A           +      +  + 
Sbjct: 11  KVNAKGRTYYYAWRG-GPALR-GEPGSAEFMASLQEA---------NDSRVIPDASKFRA 59

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT-----TKHIRSGVESRKH 128
           +I+ Y+ S  +  LA +++ ++  + D+I +K GD    +          IR        
Sbjct: 60  VITAYKSSHDYQKLADSTKRNWNGWLDRIGKKFGDLSIAQFDLPQKIRPVIRKWRGEFAD 119

Query: 129 TPSSAIQFLTSMRVLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            P +A   +  +  +  +AV     ++ NPC  +++  +       WT +D+ + K+  S
Sbjct: 120 KPRTADYGMQVLSRVLSYAVDPLGKISQNPCEGIKQLYKNDRAAIIWTDQDIARLKTKCS 179

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDGFMKLL 245
              +   A +   ++GLR  D  R    H+ +N   + T K+       + L      LL
Sbjct: 180 P--EVAWAVDLAAHTGLRAGDLLRLSWSHITDNAIILPTGKSRHTKEAVIPLYAELRALL 237

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAGA 302
              P        N  K       F   F     +A +   +   H  R  +AT    AG 
Sbjct: 238 QTIPRRSPIVLTNTRKAPWTVNGFGSSFSDCREEAKLGDRDLHFHDFRGTAATKFYIAGL 297

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343
           +   +    GW+         +   +        ++I    
Sbjct: 298 SERVIAEIMGWEEETVRNIIRRYVSKTAAIEATIKQIDEAR 338


>gi|254689202|ref|ZP_05152456.1| Phage integrase [Brucella abortus bv. 6 str. 870]
 gi|256257452|ref|ZP_05462988.1| Phage integrase [Brucella abortus bv. 9 str. C68]
 gi|260754704|ref|ZP_05867052.1| conserved hypothetical protein [Brucella abortus bv. 6 str. 870]
 gi|260883729|ref|ZP_05895343.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68]
 gi|297248299|ref|ZP_06932017.1| hypothetical protein BAYG_01242 [Brucella abortus bv. 5 str. B3196]
 gi|260674812|gb|EEX61633.1| conserved hypothetical protein [Brucella abortus bv. 6 str. 870]
 gi|260873257|gb|EEX80326.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68]
 gi|297175468|gb|EFH34815.1| hypothetical protein BAYG_01242 [Brucella abortus bv. 5 str. B3196]
          Length = 341

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 62/341 (18%), Positives = 119/341 (34%), Gaps = 24/341 (7%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
           +    G+  YY  +G G  +R   P  + F+ +   A           +      +  + 
Sbjct: 11  KVNAKGRTYYYAWRG-GPALR-GEPGSAEFMASLQEA---------NDSRVIPDASKFRA 59

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT-----TKHIRSGVESRKH 128
           +I+ Y+ S  +  LA +++ ++  + D+I +K GD    +          IR        
Sbjct: 60  VITAYKSSHDYQKLADSTKRNWNGWLDRIGKKFGDLSIAQFDLPQKIRPVIRKWRGEFAD 119

Query: 129 TPSSAIQFLTSMRVLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            P +A   +  +  +  +AV     ++ NPC  +++  +       WT +D+ + K+  S
Sbjct: 120 KPRTADYGMQVLSRVLSYAVDPLGKISQNPCEGIKQLYKNDRAAIIWTDQDIARLKTKCS 179

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDGFMKLL 245
              +   A +   ++GLR  D  R    H+ +N   + T K+       + L      LL
Sbjct: 180 P--EVAWAVDLAAHTGLRAGDLLRLSWSHITDNAIILPTGKSRHTKEAVIPLYAELRALL 237

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAGA 302
              P        N  K       F   F     +A +   +   H  R  +AT    AG 
Sbjct: 238 QTIPRRSPIVLTNTRKAPWTVNGFGSSFSDCRGEAKLGDRDLHFHDFRGTAATKFYIAGL 297

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343
           +   +    GW+         +   R        ++I    
Sbjct: 298 SERVIAEIMGWEEETVRNIIRRYVSRTAAIEATIKQIDEAR 338


>gi|260563980|ref|ZP_05834466.1| phage integrase [Brucella melitensis bv. 1 str. 16M]
 gi|260153996|gb|EEW89088.1| phage integrase [Brucella melitensis bv. 1 str. 16M]
          Length = 341

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 61/341 (17%), Positives = 118/341 (34%), Gaps = 24/341 (7%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
           +    G+  YY  +G G  +R   P  + F+ +   A           +      +  + 
Sbjct: 11  KVNAKGRTYYYAWRG-GPALR-GEPGSAEFMASLQEA---------NDSRVIPDASKFRA 59

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT-----TKHIRSGVESRKH 128
           +I+ Y+ S  +  LA +++ ++  + D+I +K GD    +          IR        
Sbjct: 60  VITAYKSSHDYQKLADSTKRNWNGWLDRIGKKFGDLSITQFDLPQKIRPVIRKWRGEFAD 119

Query: 129 TPSSAIQFLTSMRVLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            P +A   +  +  +  +AV     ++ NPC  +++  +       WT +D+ + K+  S
Sbjct: 120 KPRTADYGMQVLSRVLSYAVDPLGKISQNPCEGIKQLYKNDRAAIIWTDQDIARLKTKCS 179

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDGFMKLL 245
              +   A +   ++GLR  D  R    H+ +N   + T K+       + L      LL
Sbjct: 180 P--EVAWAVDLAAHTGLRAGDLLRLSWSHITDNAIILPTGKSRHTKEAVIPLYAELRALL 237

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGA 302
              P        N  K       F   F     +A +       H  R  +AT    AG 
Sbjct: 238 QTIPRRSPIVLTNTRKAPWTVNGFGSSFSDCREEAKLGDRDLYFHDFRGTAATKFYIAGL 297

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343
           +   +    GW+         +   +        ++I    
Sbjct: 298 SERVIAEIMGWEEETVRNIIRRYVSKTAAIEATIKQIDEAR 338


>gi|256113508|ref|ZP_05454342.1| phage-related integrase [Brucella melitensis bv. 3 str. Ether]
 gi|265994891|ref|ZP_06107448.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|262766004|gb|EEZ11793.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
           Ether]
          Length = 341

 Score =  184 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 61/341 (17%), Positives = 119/341 (34%), Gaps = 24/341 (7%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
           +    G+  YY  +G G  +R   P  + F+ +   A           +      +  + 
Sbjct: 11  KVNAKGRTYYYAWRG-GPALR-GEPGSAEFMASLQEA---------NDSRVIPDASKFRA 59

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT-----TKHIRSGVESRKH 128
           +I+ Y+ S  +  LA +++ ++  + D+I +K GD    +          IR        
Sbjct: 60  VITAYKSSHDYQKLADSTKRNWNGWLDRIGKKFGDLSIAQFDLPQKIRPVIRKWRGEFAD 119

Query: 129 TPSSAIQFLTSMRVLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            P +A   +  +  +  +AV     ++ NPC  +++  +       WT +D+ + K+  S
Sbjct: 120 KPRTADYGMQVLSRVLSYAVDPLGKISQNPCEGIKQLYKNDRAAIIWTDQDIARLKTKCS 179

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDGFMKLL 245
              +   A +   ++GLR  D  R    H+ +N   + T K+       + L      LL
Sbjct: 180 P--EVAWAVDLAAHTGLRAGDLLRLSWSHITDNAIILPTGKSRHTKEAVIPLYAELRALL 237

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAGA 302
              P        N  K       F   F     +A +   +   H  R  +AT    AG 
Sbjct: 238 QTIPRRSPIVLTNTRKAPWTVNGFGSSFSDCREEAKLGDRDLHFHDFRGTAATKFYIAGL 297

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343
           +   +    GW+         +   +        ++I    
Sbjct: 298 SECVIAEIMGWEEETVRNIIRRYVSKTAAIEATIKQIDEAR 338


>gi|254501363|ref|ZP_05113514.1| site-specific recombinase, phage integrase family protein
           [Labrenzia alexandrii DFL-11]
 gi|222437434|gb|EEE44113.1| site-specific recombinase, phage integrase family protein
           [Labrenzia alexandrii DFL-11]
          Length = 362

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 61/340 (17%), Positives = 121/340 (35%), Gaps = 26/340 (7%)

Query: 20  KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYR 79
           +  YY R  + R      P    F+ +  +A+     +            TL  LI E++
Sbjct: 21  RTYYYHRATNTRLQ--GEPGSPEFLSSIAAAVEQCRQR---------DAGTLGGLIREFQ 69

Query: 80  KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-----TPSSAI 134
           ++A W  LA  ++  +   F     + G   Y  +  K  R  V           P  A 
Sbjct: 70  QTAKWRRLAETTQNEYRRIFKFWEDQYGTCPYPALEDKAFRRAVIKWHDAFSEAKPREAD 129

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
             +T +  +  WA R   +  N     ER  +     + W  E ++ F +  S   + +L
Sbjct: 130 NRVTVLARVLSWATRDGPLKRNVLDGFERAYQSDRSDKIWLPEHVEAFMAVASP--EMKL 187

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------GTIITVELPDGFMKLLAMT 248
           A    L++G R  D  +    +      S++  K+      G ++T++      + L   
Sbjct: 188 AMVLALHTGQRRGDLLQLNWNNYDGERISLRQGKSRRGKIEGRLVTIKCTRALKETLDHL 247

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHEL 307
           P            +      F++ ++    +AG+ +   H +R  + T+   AG    E+
Sbjct: 248 PKRSTLILTTKTGKAFKKRYFALQWEKTCREAGIEDLHFHDIRGTTVTMLFQAGCNLGEI 307

Query: 308 MATYGWKTVDQAETYTKGADR-IRLGIKNSRRISSVVDSD 346
           ++  G       +   K   R   +      +  +V+++D
Sbjct: 308 VSITGHCLRRAQDILDKYLARTSTMADNAIAKFENVLETD 347


>gi|17987295|ref|NP_539929.1| integrase/recombinase [Brucella melitensis bv. 1 str. 16M]
 gi|17982974|gb|AAL52193.1| integrase/recombinase [Brucella melitensis bv. 1 str. 16M]
          Length = 336

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 61/341 (17%), Positives = 118/341 (34%), Gaps = 24/341 (7%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
           +    G+  YY  +G G  +R   P  + F+ +   A           +      +  + 
Sbjct: 6   KVNAKGRTYYYAWRG-GPALR-GEPGSAEFMASLQEA---------NDSRVIPDASKFRA 54

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT-----TKHIRSGVESRKH 128
           +I+ Y+ S  +  LA +++ ++  + D+I +K GD    +          IR        
Sbjct: 55  VITAYKSSHDYQKLADSTKRNWNGWLDRIGKKFGDLSITQFDLPQKIRPVIRKWRGEFAD 114

Query: 129 TPSSAIQFLTSMRVLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            P +A   +  +  +  +AV     ++ NPC  +++  +       WT +D+ + K+  S
Sbjct: 115 KPRTADYGMQVLSRVLSYAVDPLGKISQNPCEGIKQLYKNDRAAIIWTDQDIARLKTKCS 174

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDGFMKLL 245
              +   A +   ++GLR  D  R    H+ +N   + T K+       + L      LL
Sbjct: 175 P--EVAWAVDLAAHTGLRAGDLLRLSWSHITDNAIILPTGKSRHTKEAVIPLYAELRALL 232

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGA 302
              P        N  K       F   F     +A +       H  R  +AT    AG 
Sbjct: 233 QTIPRRSPIVLTNTRKAPWTVNGFGSSFSDCREEAKLGDRDLYFHDFRGTAATKFYIAGL 292

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343
           +   +    GW+         +   +        ++I    
Sbjct: 293 SERVIAEIMGWEEETVRNIIRRYVSKTAAIEATIKQIDEAR 333


>gi|254704264|ref|ZP_05166092.1| Phage integrase [Brucella suis bv. 3 str. 686]
 gi|261754933|ref|ZP_05998642.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686]
 gi|261744686|gb|EEY32612.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686]
          Length = 341

 Score =  183 bits (464), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 62/341 (18%), Positives = 119/341 (34%), Gaps = 24/341 (7%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
           +    G+  YY  +G G  +R   P  + F+ +   A           +      +  + 
Sbjct: 11  KVNAKGRTYYYAWRG-GPALR-GEPGSAEFMASLQEA---------NDSRVIPDASKFRA 59

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT-----TKHIRSGVESRKH 128
           +I+ Y+ S  +  LA +++ ++  + D+I +K GD    +          IR        
Sbjct: 60  VITAYKSSHDYQKLADSTKRNWNGWLDRIGKKFGDLSIAQFDLPQKIRPVIRKWRGEFAD 119

Query: 129 TPSSAIQFLTSMRVLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            P +A   +  +  +  +AV     ++ NPC  +++  +       WT +D+ + K+  S
Sbjct: 120 KPRTADYGMQVLSRVLSYAVDPLGKISQNPCEGIKQLYKNDRAAIIWTDQDIARLKTKCS 179

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDGFMKLL 245
              +   A +   ++GLR  D  R    H+ +N   + T K+       + L      LL
Sbjct: 180 P--EVAWAVDLAAHAGLRAGDLLRLSWSHITDNAIILPTGKSRHTKEAVIPLYAELRALL 237

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAGA 302
              P        N  K       F   F     +A +   +   H  R  +AT    AG 
Sbjct: 238 QTIPRRSPIVLTNTRKAPWTVNGFGSSFSDCREEAKLGDRDLHFHDFRGTAATKFYIAGL 297

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343
           +   +    GW+         +   R        ++I    
Sbjct: 298 SERVIAEIMGWEEETVRNIIRRYVSRTAAIEATIKQIDEAR 338


>gi|99081533|ref|YP_613687.1| phage integrase [Ruegeria sp. TM1040]
 gi|99037813|gb|ABF64425.1| hypothetical protein TM1040_1692 [Ruegeria sp. TM1040]
          Length = 348

 Score =  182 bits (461), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 76/350 (21%), Positives = 134/350 (38%), Gaps = 24/350 (6%)

Query: 3   PSLRLPPFVTKERTRHGKIIYYFR-------KGHGRRIRLPYPHESTFIP-AYMSALTGS 54
           P +  P  V K  TR+   + Y R       K   R  +L +  +S  +   Y     G 
Sbjct: 7   PRIVKPGLVWKWDTRNSIWVPYHRVNWTEGGKRKQRTTKLDWRGDSERLDMLYWQCRAGK 66

Query: 55  TPKREYINSPRKKPTTLKWLISEYRKSAHWGS-LAVNSRISFESYFDQIIRKSGDFDYRK 113
             K+           T + LI+ +R+     S LA  ++ S+    + I+ K+ D D R+
Sbjct: 67  HKKQTAP-----AKYTWRQLITAWREDPRVQSRLADGTKRSYSRTMEAILDKNSDKDVRR 121

Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKW-AVRQEY-VAINPCLSVERPKRKTEGI 171
            T + IR+       TP  A ++L ++ +L+ + A + ++ +  NP   +E   +++E  
Sbjct: 122 TTRQAIRTAHSKMSETPRKADKYLQTVSLLWNYGAEKLDWPLGPNPAKGIEHFGKQSE-Y 180

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
            PW +  + + K         R A E +L +G R + +      H      S+  +K+  
Sbjct: 181 EPWPEWMVDKLK---DAPEHVRTAAELILGTGQRPNAAIHMKFAHFDGEWMSVLDEKSDE 237

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHG 288
            I V  P    + ++  P         N  +       S  F+      G        HG
Sbjct: 238 RIDVYCPPALREFISRAPRNGAYVLAKNLTEPRGYWSISSSFRTWRDALGPEAKKYVLHG 297

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338
           +RK S    A+AG +  E+ A    ++ +    Y   A R  L      R
Sbjct: 298 LRKLSIIRLAEAGCSDAEIQAVTN-QSAEMVAYYRSRASRKALSRAAQER 346


>gi|220921956|ref|YP_002497257.1| integrase family protein [Methylobacterium nodulans ORS 2060]
 gi|219946562|gb|ACL56954.1| integrase family protein [Methylobacterium nodulans ORS 2060]
          Length = 353

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 78/362 (21%), Positives = 129/362 (35%), Gaps = 34/362 (9%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63
            +R+P    K     G    Y R    R           +  A  +    + PK      
Sbjct: 3   KVRVPG--VKVYVSKGITYAYDRASGERLTPPHEIGTPGWWTALQAIRAKAKPK------ 54

Query: 64  PRKKPTTLKWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122
            +++P T   L+  YR S  +   LA  +R  +++  D +  K  D      T   +   
Sbjct: 55  VKEEPGTWGALVISYRSSPRFLNDLAPRTRADYQTVLDHL-GKLHDRPISAWTRGFVAGL 113

Query: 123 VES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE---RPKRKTEGIRPWTKE 177
            +   +K     A   L+ + V+F   + +E  + NP   V+   RPK      RPW+ E
Sbjct: 114 RDEAQKKKGRRFANYVLSVVSVVFAHGIEREMASTNPVRDVKKLRRPKGAPRANRPWSPE 173

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTGTIITV 235
           +     +  S   + R A       G R  ++  A            S  + K+G  + V
Sbjct: 174 EWDAVVAAASP--ELRAAIMLGGVLGYRQGEALSAKRDSWNRAAGTLSRISAKSGKPVKV 231

Query: 236 ELPDGFMKLLAMTPI-GKETFFINNDKQKMNATQF-SIWFKAKATKAGVNK-----SAHG 288
           + P+   + LA  P     T  +N+  Q      F   +F+   T     K     + HG
Sbjct: 232 QAPEIVAQALAALPSHSATTLLVNSRGQPWKEDGFRGSFFRLIRTLEAEGKIADGLTFHG 291

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD--------RIRLGIKNSRRIS 340
           +R  +AT     G     +    G +T   A  Y++ AD         +RL  +N +R  
Sbjct: 292 LRHTAATQMRQLGFDTRTIADMLGQETEGMAAHYSREADLEPKLRGVVVRLDQENRKRTG 351

Query: 341 SV 342
           SV
Sbjct: 352 SV 353


>gi|126739278|ref|ZP_01754972.1| Integrase [Roseobacter sp. SK209-2-6]
 gi|126719895|gb|EBA16603.1| Integrase [Roseobacter sp. SK209-2-6]
          Length = 339

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 67/337 (19%), Positives = 117/337 (34%), Gaps = 27/337 (8%)

Query: 18  HGKIIYYFRK-GHGRRIRLP----YPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           H    +Y RK  +G+ I L         + F   Y   ++G   +           T+  
Sbjct: 12  HSSGRWYVRKCVNGKMIYLGRITAKEDTAEFDHQYWEIVSGKRAE---------AKTSWT 62

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132
            LI+  R++  W + +   R   E  F  +  K G  D  ++T   I   +E  KH    
Sbjct: 63  ALIAAMRETDKWANFSPRYRKDLEPVFTYLTEKIGKADVVRLTQADIYDAMEKNKHRVRF 122

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVER---PKRKTEGIRPWTKEDMQQFKSFWSEG 189
           A    T++ +L K A+R+ +   NP + +E    PK + +   PWT   +++ +      
Sbjct: 123 ANYIPTAISMLSKLAIRKRWRKDNPAIDIEPLKVPKARKKPHVPWTDWAVERLRD--EGE 180

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT- 248
           S P L FE  + S  R  D               ++  KTG  + +   +     L    
Sbjct: 181 SLPVLIFEIGVGSVQRPGDWVDFQWGDYDGETLKLRQNKTGKPLLLPCTEALKTALDRAK 240

Query: 249 ------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG 301
                 P          D   M+    +     +  + G+     H +R       A AG
Sbjct: 241 AELGFVPHPLRHILTRADGSAMDYHAMARVMVRERKRLGLMAFDQHALRYRGVMELAWAG 300

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338
            T  E+ +  G  +      Y   A +I    + + +
Sbjct: 301 CTDDEIASFSGHTSKAMIVKYAGEARQIMRARQAAAK 337


>gi|254701722|ref|ZP_05163550.1| Phage integrase [Brucella suis bv. 5 str. 513]
 gi|261752275|ref|ZP_05995984.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513]
 gi|261742028|gb|EEY29954.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513]
          Length = 341

 Score =  180 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 61/341 (17%), Positives = 118/341 (34%), Gaps = 24/341 (7%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
           +    G+  YY  +G G  +R   P  + F+ +   A           +      +  + 
Sbjct: 11  KVNAKGRTYYYAWRG-GPALR-GEPGSAEFMASLQEA---------NDSRVIPDASKFRA 59

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT-----TKHIRSGVESRKH 128
           +I+ Y+ S  +  LA +++ ++  + D+I +K GD    +          IR        
Sbjct: 60  VITAYKSSHDYQKLADSTKRNWNGWLDRIGKKFGDLSIAQFDLPQKIRPVIRKWRGEFAD 119

Query: 129 TPSSAIQFLTSMRVLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            P +A   +  +  +  +AV     ++ NPC  +++  +        T +D+ + K+  S
Sbjct: 120 KPRTADYGMQVLSRVLSYAVDPLGKISQNPCEGIKQLYKNDRAAIIRTDQDIARLKTKCS 179

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDGFMKLL 245
              +   A +   ++GLR  D  R    H+ +N   + T K+       + L      LL
Sbjct: 180 P--EVAWAVDLAAHTGLRAGDLLRLSWSHITDNAIILPTGKSRHTKEAVIPLYAELRALL 237

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAGA 302
              P        N  K       F   F     +A +   +   H  R  +AT    AG 
Sbjct: 238 QTIPRRSPIVLTNTRKAPWTVNGFGSSFSDCREEAKLGDRDLHFHDFRGTAATKFYIAGL 297

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343
           +   +    GW+         +   R        ++I    
Sbjct: 298 SERVIAEIMGWEEETVRNIIRRYVSRTAAIEATIKQIDEAR 338


>gi|261218687|ref|ZP_05932968.1| conserved hypothetical protein [Brucella ceti M13/05/1]
 gi|261321815|ref|ZP_05961012.1| conserved hypothetical protein [Brucella ceti M644/93/1]
 gi|260923776|gb|EEX90344.1| conserved hypothetical protein [Brucella ceti M13/05/1]
 gi|261294505|gb|EEX98001.1| conserved hypothetical protein [Brucella ceti M644/93/1]
          Length = 323

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 59/331 (17%), Positives = 114/331 (34%), Gaps = 23/331 (6%)

Query: 24  YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAH 83
           Y+    G  +R   P  + F+ +   A           +      +  + +I+ Y+ S  
Sbjct: 2   YYAWRGGPALR-GEPGSAEFMASLQEA---------NDSRVIPDASKFRAVITAYKSSHD 51

Query: 84  WGSLAVNSRISFESYFDQIIRKSGDFDYRKIT-----TKHIRSGVESRKHTPSSAIQFLT 138
           +  LA +++ ++  + D+I +K GD    +          IR         P +A   + 
Sbjct: 52  YQKLADSTKRNWNGWLDRIGKKFGDLSIAQFDLPQKIRPVIRKWRGEFADKPRTADYGMQ 111

Query: 139 SMRVLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE 197
            +  +  +AV     ++ NPC  +++  +       WT +D+ + K+  S   +   A +
Sbjct: 112 VLSRVLSYAVDPLGKISQNPCEGIKQLYKNDRAAIIWTDQDIARLKTKCSP--EVAWAVD 169

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDGFMKLLAMTPIGKETF 255
              ++GLR  D  R    H+ +N   + T K+       + L      LL   P      
Sbjct: 170 LAAHTGLRAGDLLRLSWSHITDNAIILPTGKSRHTKEAVIPLYAELRALLQTIPRRSPIV 229

Query: 256 FINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAGATAHELMATYG 312
             N  K       F   F     +A +   +   H  R  +AT    AG +   +    G
Sbjct: 230 LTNTRKAPWTVNGFGSSFSDCREEAKLGDRDLHFHDFRGTAATKFYIAGLSERVIAEIMG 289

Query: 313 WKTVDQAETYTKGADRIRLGIKNSRRISSVV 343
           W+         +   R        ++I    
Sbjct: 290 WEEETVRNIIRRYVSRTAAIEATIKQIDEAR 320


>gi|329888682|ref|ZP_08267280.1| phage integrase family protein [Brevundimonas diminuta ATCC 11568]
 gi|328847238|gb|EGF96800.1| phage integrase family protein [Brevundimonas diminuta ATCC 11568]
          Length = 374

 Score =  178 bits (452), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 62/371 (16%), Positives = 126/371 (33%), Gaps = 45/371 (12%)

Query: 11  VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
           +TK+R    ++ Y++    G R+    P    F+ AY +A+      +           T
Sbjct: 12  ITKKRADGSRVTYWYAWKGGPRLP-GSPGSPEFMAAYNAAVAERRAPK---------TDT 61

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK------SGDFDYRKITTKHIRS--- 121
           L+ L   Y++S  + +L   ++  +  + D I+         G   +  +  + +++   
Sbjct: 62  LRSLAILYKQSPEYDALGDTTKREWTRWLDVIMDDSDAPLAIGGLPFDALDDRRVKAEIL 121

Query: 122 -GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
              +     P  A   +  +  +  W + +  +A+N    +++        + WT E+++
Sbjct: 122 AWRDQWADRPRKADYGIQVLSRVLSWGMDRGLLALNAAAGIKQLYTSNRADQIWTAEEIE 181

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT--GTIITVELP 238
           ++ +         +      ++GLR  D       H+ +      T+K+       + L 
Sbjct: 182 RYAAAAKSPEVGFIVR-LACHTGLRREDLASLCWSHVGDLAIVKATKKSRGKKTAVIPLL 240

Query: 239 DGFMKLL----------------------AMTPIGKETFFINNDKQKMNATQFSIWFKAK 276
           D    LL                         P+   T   N   +  +           
Sbjct: 241 DDTKALLEEIRAQQRRRHSELADSAAKKKRPAPVECLTVLSNTRGKPWSLDGLEHQVVDA 300

Query: 277 ATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
              AG+NK  H  R   AT    AG TA E+    GW+            DR  + ++ +
Sbjct: 301 KAAAGINKHLHDARGTFATRLRRAGLTAAEIADILGWEEDRVQRLLAVYVDRDSIVMEIA 360

Query: 337 RRISSVVDSDD 347
            RI     + D
Sbjct: 361 NRIRRNETATD 371


>gi|306845920|ref|ZP_07478487.1| integrase family protein [Brucella sp. BO1]
 gi|306273555|gb|EFM55400.1| integrase family protein [Brucella sp. BO1]
          Length = 305

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 53/286 (18%), Positives = 99/286 (34%), Gaps = 15/286 (5%)

Query: 38  PHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFES 97
           P    F+  Y+                  KP TL WL+SEY  SA +  L+VN++  +E 
Sbjct: 5   PDTPAFMHEYLRL-------TRDRKIAEAKPKTLAWLVSEYLASADYQKLSVNTKRDYER 57

Query: 98  YFDQIIRKSGDFDYRKITTKHIR----SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYV 153
               I  K G    + +  +  R       +  + TP SA   +T +  +  WA  +E +
Sbjct: 58  MTGVISIKFGTLPVQALEARGARRLFMDWRDEMRATPRSADLHITVLARIMSWAKNREII 117

Query: 154 AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG 213
             NP     +  +       W    + +F +            +  L++  R  D     
Sbjct: 118 IRNPLEKAGKLHKSNRKDIIWMPSQLSKFLNEAPAHLSD--VVKMALWTMQRKGDVLGMP 175

Query: 214 VQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET-FFINNDKQKMNATQFSIW 272
                +++  I   KTG  + ++  D  + +L        T    N+      ++ F   
Sbjct: 176 TIAYSDDLLWITQGKTGARVRIKPADEILPILRTAKEKNRTRVLANSFGDMWTSSGFDSS 235

Query: 273 FKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD 317
           FK +  +  +   + H +R  + T +   G     +    G    +
Sbjct: 236 FKKEMNRLEIKGVTFHDLRGTAITYAYANGMDVERIAEISGHSKSE 281


>gi|260577125|ref|ZP_05845103.1| integrase family protein [Rhodobacter sp. SW2]
 gi|259020703|gb|EEW24021.1| integrase family protein [Rhodobacter sp. SW2]
          Length = 358

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 78/358 (21%), Positives = 129/358 (36%), Gaps = 38/358 (10%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKGHG-----RRIRLPY-PHESTFIPAYMSALTGSTPK 57
            + LP  V    +  G+  +Y+++G G      RIRLP  P    F  A   A     P 
Sbjct: 3   KISLPRHVHHVIS-GGRDYFYYQEGRGTPHQGERIRLPDKPQTPEFWNAVRQAQGTFGPT 61

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHW----GSLAVNSRISFESYFDQIIRKSGDFDYRK 113
                       T+  LI  Y     W      L+  ++  +        +  GD   R 
Sbjct: 62  P---------TDTVGALIDAY--EGAWPTLQRKLSKGTQEQYRRNLKPSRKAWGDLPARD 110

Query: 114 ITTKHIRSGVES-RKHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGI 171
           +  KH+ + +       P +A   L +++ L +WA    + +A +P   V R   K  G 
Sbjct: 111 LRPKHVDALIRKIGAERPGAANNVLDALKALCRWANGPVDLLAHDPTKGVHRF-EKGAGH 169

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
            PWT+  +  F      G   R  +    Y+G R SD  R     + +  FS++ +KTG 
Sbjct: 170 EPWTEAQL-AFAEQTFTG-PLRRYYFLSRYTGQRISDVVRLNPGDVDDGGFSLRQKKTGV 227

Query: 232 IITVELPDGFMKLLAMTPIGKETFFIN----NDKQKMNATQFSIWFKAKATK----AGVN 283
                +       +A        + +     +  +  +  Q    F A+  K    AG  
Sbjct: 228 KPWCPIFAELETEMATWERRLGPYLLQEIGKSAGKPFSTNQMWKAFDAERAKHPILAG-- 285

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
              HG+R  +       G +A ++    G  +V+  E Y + +DR   G    R I  
Sbjct: 286 AVPHGLRANAVIRLRVGGYSALQISDMVG-MSVEMVEHYCRHSDRKASGQAVLREIRE 342


>gi|222149050|ref|YP_002550007.1| phage-related integrase [Agrobacterium vitis S4]
 gi|221736035|gb|ACM36998.1| phage-related integrase [Agrobacterium vitis S4]
          Length = 311

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 57/295 (19%), Positives = 105/295 (35%), Gaps = 21/295 (7%)

Query: 38  PHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFES 97
           P    F   ++                    +T+  LI EYR++A + +L+ ++R  +E 
Sbjct: 5   PGTKAFTQEFLRL--------TRDRQKPAIASTIGSLIDEYRQTARYKALSPSTRRDYER 56

Query: 98  YFDQIIRKSGDFDYRKITTKHIRS----GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYV 153
            F  I  + GD     +  +  R       +  K +P SA   +  +  LF WA   EY+
Sbjct: 57  IFGAIRLEYGDCPLAAVEARGSRRGFLSWRDKMKDSPRSADMHIALLSRLFVWAKDSEYI 116

Query: 154 AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG 213
             NP   VER    +     W+   + +  +  S     R   +  L++  R +D     
Sbjct: 117 MRNPLERVERLHEGSRKDIIWSSNQIDKLLAEASP--HIRDVAKVALWTMQRQADILTMP 174

Query: 214 VQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP-IGKETFFINNDKQKMNATQFSIW 272
                    SIK  KTG  + V      M +L       ++   +N+  Q   ++ F   
Sbjct: 175 TLAFDGERLSIKQGKTGARVRVIAAPDLMPMLRKAKEAQRQRVLVNSFGQNWTSSGFRAS 234

Query: 273 FKAKATKAGVNK-SAHGVRKFSATISADAGATAHE-----LMATYGWKTVDQAET 321
           ++ +  + G+   + H +R  + T +       H+     +    G    D    
Sbjct: 235 WRKEMARLGIKGVTFHDLRGTAITFAYAHLDRPHDEKIKLISEISGHSREDAESI 289


>gi|220926098|ref|YP_002501400.1| integrase family protein [Methylobacterium nodulans ORS 2060]
 gi|219950705|gb|ACL61097.1| integrase family protein [Methylobacterium nodulans ORS 2060]
          Length = 344

 Score =  175 bits (444), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 58/331 (17%), Positives = 112/331 (33%), Gaps = 19/331 (5%)

Query: 23  YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSA 82
           YY+ +  G R+ +  P    F+ ++ +A            +      T+ WLI +Y  S 
Sbjct: 23  YYYHRPTGIRL-VGEPGTPEFLASFQAA--------AKSMTQTHGAGTVAWLIRQYCDSP 73

Query: 83  HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR----SGVESRKHT-PSSAIQFL 137
            W  LA +++         +  K G        ++  R       +    T P +A   L
Sbjct: 74  QWKKLAASTQEIGRLNLKAVEDKWGATPLEHAQSQRTRPLYLRWHDKMAATHPRAADAKL 133

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE 197
           +++  +  W V +  +  NP  + ER  +     + W  E +  F    S   +  L   
Sbjct: 134 SALARVLSWGVDRGLITNNPVATFERAYKADRAEKIWLPEHVAAFNKAASPELRLALLLA 193

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI 257
              ++G R  D  +           S++  K+G  + +         L   P    T   
Sbjct: 194 L--HTGQRQGDLLQLPWSGYDGTAVSLRQGKSGRKVWIPATRALRAELDAAPRRAVTILT 251

Query: 258 NNDKQKMNATQF-SIWFKA-KATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKT 315
             D +      F   W +A +A++   +   H +R  + T+ ++ G+T  E+    G   
Sbjct: 252 KPDGESWTKDAFTWAWGRAFEASEIKDDLHFHDLRGTAVTMLSEVGSTPQEIATITGHTV 311

Query: 316 VDQAETYTKGADRIR-LGIKNSRRISSVVDS 345
                       R R L      ++     +
Sbjct: 312 ASVNRILETYLARTRTLAESAIIKLDQHRRN 342


>gi|159184306|ref|NP_353464.2| phage-related integrase [Agrobacterium tumefaciens str. C58]
 gi|159139630|gb|AAK86249.2| phage-related integrase [Agrobacterium tumefaciens str. C58]
          Length = 342

 Score =  175 bits (444), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 56/338 (16%), Positives = 122/338 (36%), Gaps = 25/338 (7%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
               G + YY  +G G R+   +P  + F+ +Y  A+               +    + +
Sbjct: 12  VKAKGNVYYYAWRG-GPRLD-GHPGTAAFMASYNEAIANRMEP---------ESGRFRSI 60

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVESRKHT 129
           I+ Y+ +  +  LA +++  +  + D+I    G+    +          IR        T
Sbjct: 61  ITHYKAT-EFKKLADSTKRVWSPWIDRISEHFGNLSIAQFNRTDKIRPRIRQWRGQYSDT 119

Query: 130 PSSAIQFLTSMRVLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           P +A   +  +  +    V     ++ NP   ++           WT  D+ Q K+  S+
Sbjct: 120 PRAADTGMQVLSRILSHGVDPMGKLSANPAEGIKHLYSSDRSEIIWTDADIAQVKAECSD 179

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT--GTIITVELPDGFMKLLA 246
             + +   +   ++GLR SD  +    H+  +   I T K+       +   D   ++L 
Sbjct: 180 --EVKWVIDLAAHTGLRVSDLLKLSWSHVGPDAIIISTGKSRHKREAIIPRYDALNEILE 237

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAGAT 303
             P        ++ K+    +  +  F     KA +   +   H +R  +AT   +AG +
Sbjct: 238 RIPKRSPVILTSSKKKPWKPSGLNTMFWRAKEKAKMLERDLHFHDLRGTAATKFYNAGLS 297

Query: 304 AHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
              +     W+     +   +   R    +++   ++S
Sbjct: 298 VRVIAEIMAWEEETVGKIIRRYVGRNSATLEHINMLNS 335


>gi|302346034|ref|YP_003814387.1| phage integrase, N-terminal SAM domain protein [Prevotella
           melaninogenica ATCC 25845]
 gi|302149123|gb|ADK95385.1| phage integrase, N-terminal SAM domain protein [Prevotella
           melaninogenica ATCC 25845]
          Length = 314

 Score =  175 bits (444), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 55/276 (19%), Positives = 107/276 (38%), Gaps = 23/276 (8%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQII-----RKSGDFDYRKITTKHIRSGVES 125
           K ++S YR+        +VN+  ++    D++       +    D +    +H  + +  
Sbjct: 8   KDIVSRYRRYLKLEKGYSVNTLDAYMRDVDKLFRYLAVEQVDVLDVKLEDLEHFAAFISD 67

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
               P S  + L+ +R  +++ V   Y+ ++P   +E PK+        +  ++   +  
Sbjct: 68  LGIGPRSLARILSGVRQFYRFLVIDGYLEVDPTELLESPKQPDHLPEVLSTAEVDLLEQA 127

Query: 186 WS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDG 240
                 EG + R   E L   GLR S+     + +L      I+    G+    V +   
Sbjct: 128 IDLSKWEGHRNRAIIEVLFSCGLRVSELTNLKLSNLYIEEQYIRVMGKGSKERLVPISPR 187

Query: 241 FMK----------LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288
            +           ++ + P  ++  F+N   Q +  T   I  K  A +AG+ K  S H 
Sbjct: 188 ALDELSYWFADRNVMKIKPGEEDYVFLNRRGQHLTRTMILIMIKRYAVEAGIKKTISPHT 247

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +R   AT   + GA    + A  G +++   E YT 
Sbjct: 248 LRHSFATSLLEGGADLRAIQAMLGHESIGTTEIYTH 283


>gi|260467239|ref|ZP_05813415.1| integrase family protein [Mesorhizobium opportunistum WSM2075]
 gi|319782065|ref|YP_004141541.1| integrase family protein [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|259029014|gb|EEW30314.1| integrase family protein [Mesorhizobium opportunistum WSM2075]
 gi|317167953|gb|ADV11491.1| integrase family protein [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 396

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 62/369 (16%), Positives = 122/369 (33%), Gaps = 36/369 (9%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPY-PHESTFIPAYMSALTGSTPKREYINSP-RKKPTTLK 72
           R ++GK+ Y +R      I+LP  P +  F  AY +A  G       I+ P R  P T  
Sbjct: 16  RIKNGKLTYRYRAKGMPEIQLPGKPGDPEFEVAYENATQGQHKNAVIIDLPGRALPKTFG 75

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIR---------KSGDFDYRKITTKHIRSGV 123
                   +  W      ++       ++ +             +     +    +R+ +
Sbjct: 76  HAARRLETTMEWLDFDEATQRKNARLIERFLSLKVDPAYPLTWRETPVEHLDADRLRAII 135

Query: 124 ES-RKHTPSSAIQFLTSMRVLFKWAVR-QEYVA--INPCLSVERPKRKTEGIRPWTKEDM 179
           E   +   + A   L +++ L   A   ++++    +P LS+     K+     W     
Sbjct: 136 EGIFRTNRTVAKHMLVAIKKLVWVATDIEKWIKPQDDPSLSIRVRVPKSTKNPAWPIAMR 195

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-------------IKT 226
           + F+     G+  R  +    + G R  D        L                    + 
Sbjct: 196 ETFEERHPVGTAARTCYALGFWLGNRRGDIAALAWDDLLTEEIELFDGSLVLIEAFDFRQ 255

Query: 227 QKT-----GTIITVELPDGFMKLLAMTPIGK-ETFFINNDKQKMNATQFSIWFKAKATKA 280
           +K      G  + + + D     L      K  T   N      +    S   +    +A
Sbjct: 256 KKNRNRHGGREMFIPVVDKLAAALDPLDRSKGGTVLKNGYGNPFSEKSLSGMMQHWTRQA 315

Query: 281 GVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338
           G+    + HG+R+   T  A+    A  +M   G  ++   + Y + A++ R+ +  +R 
Sbjct: 316 GIPSGYTLHGLRRTFGTYLAECNIQARAIMEAMGHSSMAVTDDYVREANKKRIAVDIARA 375

Query: 339 ISSVVDSDD 347
           I+      D
Sbjct: 376 INEREAKRD 384


>gi|260425689|ref|ZP_05779669.1| phage integrase family protein [Citreicella sp. SE45]
 gi|260423629|gb|EEX16879.1| phage integrase family protein [Citreicella sp. SE45]
          Length = 268

 Score =  173 bits (439), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 50/260 (19%), Positives = 103/260 (39%), Gaps = 5/260 (1%)

Query: 91  SRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQ 150
           +R + E  F  +   +G  D  K+ T H+    ++    P+ A + + ++ VL K+AV+ 
Sbjct: 10  TRRNHERNFRYLRETAGKIDPAKLRTVHVYEMRDALADKPTDANRKIDTLLVLMKYAVQI 69

Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210
            ++  NP   ++R     +  +PW  + ++ F++      +  L FE LL +G R  D  
Sbjct: 70  GWIDRNPAQDIQRLSPTGKKRKPWPADLIEAFRAEAE--GRALLLFEMLLGTGQRIDDVL 127

Query: 211 RAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN-ATQF 269
           +     L ++ F++   KT   + + L D    +LA             D Q+++  +  
Sbjct: 128 KLRWSDLDDDGFTLVQGKTKAELYIPLTDRLRAVLAAEKKRGLFIVCREDGQRISYPSAH 187

Query: 270 SIWFKAKATKAGVNKSAHGVRKFSATISAD-AGATAHELMATYGWKTVDQAETYTKGADR 328
                 +      +   H +R  +A+  A   G T+  + A  G  +      Y   A +
Sbjct: 188 KDIMTVRRKIGAEDYDIHALRYAAASEIAAIPGMTSDHVKAITGHASGAMIRLYAGAAQQ 247

Query: 329 IRLGIKNSR-RISSVVDSDD 347
                +  + R+       +
Sbjct: 248 KARATEAQKARMDRTKPKRE 267


>gi|288803482|ref|ZP_06408914.1| integrase/recombinase XerD [Prevotella melaninogenica D18]
 gi|288334092|gb|EFC72535.1| integrase/recombinase XerD [Prevotella melaninogenica D18]
          Length = 314

 Score =  172 bits (437), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 53/276 (19%), Positives = 106/276 (38%), Gaps = 23/276 (8%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQII-----RKSGDFDYRKITTKHIRSGVES 125
           K ++S YR+        + N+  ++    D++       +    D +    ++  + +  
Sbjct: 8   KDIVSRYRRYLKLEKGYSANTLDAYMRDVDKLFRYLAVEQVDVLDVKLEDLEYFAAFISD 67

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
               P S  + L+ +R  +++ V   Y+ ++P   +E PK+        +  ++   +  
Sbjct: 68  LGIGPRSLARILSGVRQFYRFLVIDGYLEVDPTELLESPKQPDHLPEVLSTAEVDLLEQA 127

Query: 186 WS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDG 240
                 EG + R   E L   GLR S+     + +L      I+    G+    V +   
Sbjct: 128 IDLSKWEGHRNRAIIEVLFSCGLRVSELTNLKLSNLYIEEQYIRVMGKGSKERLVPISPR 187

Query: 241 FMK----------LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288
            +           ++ + P  ++  F+N   Q +  T   I  K  A +AG+ K  S H 
Sbjct: 188 ALDELNYWFADRNVMKIKPGEEDYVFLNRRGQHLTRTMILIMIKRYAVEAGIKKTISPHT 247

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +R   AT   + GA    + A  G +++   E YT 
Sbjct: 248 LRHSFATSLLEGGADLRAIQAMLGHESIGTTEIYTH 283


>gi|222148689|ref|YP_002549646.1| phage-related integrase [Agrobacterium vitis S4]
 gi|221735675|gb|ACM36638.1| phage-related integrase [Agrobacterium vitis S4]
          Length = 346

 Score =  170 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 60/308 (19%), Positives = 112/308 (36%), Gaps = 26/308 (8%)

Query: 23  YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSA 82
           YY+    G R++  Y     F   +  A           +       TL ++IS Y++  
Sbjct: 23  YYYAWKGGPRLKEKY-GTPAFAEEFRQA---------TRDRSAPDADTLAYVISLYKR-M 71

Query: 83  HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS----GVESRKHTPSSAIQFLT 138
               L  ++R ++  Y   I  + GD D R +     R+      ++   TP +A    +
Sbjct: 72  ELPRLKPSTRSTYLPYLKNIEIEFGDMDIRAVEATGSRAVFLEWRDTMATTPRAADIAWS 131

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP-WTKEDMQQFKSFWSEGSQPRLAFE 197
            ++ +  + V  E +  NPC +  R           WT  D+ +F++  S       A  
Sbjct: 132 ILQRIMAFGVHMEKLKRNPCTNAGRLAESGTRREIIWTPPDLSRFRAVASRQLAD--ALL 189

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-------ELPDGFMKLLAMTPI 250
             +++G R  D  +            +K  KTG  + +       ++ D          +
Sbjct: 190 LAIWTGQRQGDLLKLQWSAYDGKHIRLKQGKTGRRVAILVSGTLGKMLDRLKAENEARKV 249

Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMA 309
              T   N   +   ++ F   +   A KAG+   + H +R    T++  AGA+  ++  
Sbjct: 250 QSLTILTNQRGRTWTSSGFKTSWGKAAKKAGITGLTFHDLRGTFITMARRAGASIEDIAK 309

Query: 310 TYGWKTVD 317
             G  T D
Sbjct: 310 ASGHTTKD 317


>gi|302879928|ref|YP_003848492.1| tyrosine recombinase XerD [Gallionella capsiferriformans ES-2]
 gi|302582717|gb|ADL56728.1| tyrosine recombinase XerD [Gallionella capsiferriformans ES-2]
          Length = 305

 Score =  170 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 64/290 (22%), Positives = 117/290 (40%), Gaps = 28/290 (9%)

Query: 74  LISEYRKSAHWGS--LAVNSRISFESYFDQIIRKSGDFDYRKITT---KHIRSGVES--- 125
           L+ E+  S  W    L+ N+  S+    ++      +   + +       ++  +     
Sbjct: 6   LLDEFADSL-WLEDGLSRNTLDSYRRDLNKFSDWLRNQRGQDLLQTTHADLQGYIADLFI 64

Query: 126 -RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
            +K  PSSA + L+S++ LF++ +RQ  +AI+P L ++ PK      +  T++D++Q  +
Sbjct: 65  VQKAKPSSAGRNLSSLKRLFRYLLRQGKIAIDPTLKIDTPKLPRNLPQSLTEQDVEQLLA 124

Query: 185 FWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVEL-- 237
                   G + R  FE L  +GLR S+    G+  L  ++  ++    G     V L  
Sbjct: 125 APDIETSLGLRDRTMFEVLYATGLRVSELVSLGIGQLDMDMGVVRVAGKGNKERLVPLGE 184

Query: 238 --PDGFMKLLA------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287
              D     L       +     +  F+      M    F    K  A + G++K  S H
Sbjct: 185 VALDWLQSYLDDSRGVLLAGRISDDLFVTARGSGMTRQMFWYLIKKHAKQGGLDKPLSPH 244

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
            +R   AT   + GA    +    G   +   + YT  A R RL   +++
Sbjct: 245 TLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVA-RERLKQLHAK 293


>gi|261317605|ref|ZP_05956802.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
 gi|265988639|ref|ZP_06101196.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1]
 gi|261296828|gb|EEY00325.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
 gi|264660836|gb|EEZ31097.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1]
          Length = 304

 Score =  169 bits (429), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 53/284 (18%), Positives = 101/284 (35%), Gaps = 13/284 (4%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT-----TKHIRSGVES 125
            + +I+ Y+ S  +  LA +++ ++  + D+I +K GD    +          IR     
Sbjct: 20  FRAVITAYKSSHDYQKLADSTKRNWNGWLDRIGKKFGDLSIAQFDLPQKIRPVIRKWRGE 79

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
               P +A   +  +  +  +AV     ++ NPC  +++  +       WT +D+ + K+
Sbjct: 80  FADKPRTADYGMQVLSRVLSYAVDPLGKISQNPCEGIKQLYKNDRAAIIWTDQDIARLKT 139

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDGFM 242
             S   +   A +   ++GLR  D  R    H+ +N   + T K+       + L     
Sbjct: 140 KCSP--EVAWAVDLAAHTGLRAGDLLRLSWSHITDNAIILPTGKSRHTKEAVIPLYAELR 197

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISAD 299
            LL   P        N  K       F   F     +A +   +   H  R  +AT    
Sbjct: 198 ALLQTIPRRSPIVLTNTRKAPWTVNGFGSSFSDCREEAKLGDRDLHFHDFRGTAATKFYI 257

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343
           AG +   +    GW+         +   R        ++I    
Sbjct: 258 AGLSERVIAEIMGWEEETVRNIIRRYVSRTAAIEATIKQIDEAR 301


>gi|254714058|ref|ZP_05175869.1| Phage integrase [Brucella ceti M644/93/1]
 gi|254716885|ref|ZP_05178696.1| Phage integrase [Brucella ceti M13/05/1]
          Length = 303

 Score =  169 bits (429), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 53/284 (18%), Positives = 101/284 (35%), Gaps = 13/284 (4%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT-----TKHIRSGVES 125
            + +I+ Y+ S  +  LA +++ ++  + D+I +K GD    +          IR     
Sbjct: 19  FRAVITAYKSSHDYQKLADSTKRNWNGWLDRIGKKFGDLSIAQFDLPQKIRPVIRKWRGE 78

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
               P +A   +  +  +  +AV     ++ NPC  +++  +       WT +D+ + K+
Sbjct: 79  FADKPRTADYGMQVLSRVLSYAVDPLGKISQNPCEGIKQLYKNDRAAIIWTDQDIARLKT 138

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDGFM 242
             S   +   A +   ++GLR  D  R    H+ +N   + T K+       + L     
Sbjct: 139 KCSP--EVAWAVDLAAHTGLRAGDLLRLSWSHITDNAIILPTGKSRHTKEAVIPLYAELR 196

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISAD 299
            LL   P        N  K       F   F     +A +   +   H  R  +AT    
Sbjct: 197 ALLQTIPRRSPIVLTNTRKAPWTVNGFGSSFSDCREEAKLGDRDLHFHDFRGTAATKFYI 256

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343
           AG +   +    GW+         +   R        ++I    
Sbjct: 257 AGLSERVIAEIMGWEEETVRNIIRRYVSRTAAIEATIKQIDEAR 300


>gi|326538700|gb|ADZ86915.1| phage-related integrase [Brucella melitensis M5-90]
          Length = 303

 Score =  169 bits (427), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 52/284 (18%), Positives = 101/284 (35%), Gaps = 13/284 (4%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT-----TKHIRSGVES 125
            + +I+ Y+ S  +  LA +++ ++  + D+I +K GD    +          IR     
Sbjct: 19  FRAVITAYKSSHDYQKLADSTKRNWNGWLDRIGKKFGDLSIAQFDLPQKIRPVIRKWRGE 78

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
               P +A   +  +  +  +AV     ++ NPC  +++  +       WT +D+ + K+
Sbjct: 79  FADKPRTADYGMQVLSRVLSYAVDPLGKISQNPCEGIKQLYKNDRAAIIWTDQDIARLKT 138

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDGFM 242
             S   +   A +   ++GLR  D  R    H+ +N   + T K+       + L     
Sbjct: 139 KCSP--EVAWAVDLAAHTGLRAGDLLRLSWSHITDNAIILPTGKSRHTKEAVIPLYAELR 196

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISAD 299
            LL   P        N  K       F   F     +A +   +   H  R  +AT    
Sbjct: 197 ALLQTIPRRSPIVLTNTRKAPWTVNGFGSSFSDCREEAKLGDRDLHFHDFRGTAATKFYI 256

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343
           AG +   +    GW+         +   +        ++I    
Sbjct: 257 AGLSERVIAEIMGWEEETVRNIIRRYVSKTAAIEATIKQIDEAR 300


>gi|326803729|ref|YP_004321547.1| tyrosine recombinase XerD [Aerococcus urinae ACS-120-V-Col10a]
 gi|326651687|gb|AEA01870.1| tyrosine recombinase XerD [Aerococcus urinae ACS-120-V-Col10a]
          Length = 299

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 52/281 (18%), Positives = 110/281 (39%), Gaps = 26/281 (9%)

Query: 70  TLKWLISEYRKSAH-WGSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGVES 125
           T+  LI ++  +      L+ N+  ++ +  +Q   I+ ++G  D + +  + I   +E+
Sbjct: 2   TINDLIEDFLIALRVEQGLSENTIKTYHNVLNQFQMILSEAGIEDIQAVKRQDIIQQLEN 61

Query: 126 RKHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
                 +     Q+L+++R  FK+ +    +  NP  ++  PK+K +  +  + E++ + 
Sbjct: 62  LNQKGRAVSTMSQYLSTLRHFFKYLILDSVIEENPVENISLPKKKQQLPQVLSVEEVDRL 121

Query: 183 KSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV--- 235
                     G + R   E L  SGLR S+     +     ++  ++T   G    +   
Sbjct: 122 LEMPDVNSTLGLRDRSLLELLYASGLRVSELVHLKISDFHEDLGFLQTIGKGNKERIIPL 181

Query: 236 ----------ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284
                      L +  +KLL      +   ++N+  + ++        K     AG+ K 
Sbjct: 182 GEVAKDWLQTYLKESRLKLLGENDQSQGMIYLNHHGRPLSRQGVWKKLKQYIQAAGITKE 241

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            S H +R   AT   + GA    +    G   +   + YT 
Sbjct: 242 VSPHTLRHSFATHLLENGADLRVVQELLGHADISTTQIYTH 282


>gi|300361568|ref|ZP_07057745.1| tyrosine recombinase XerD [Lactobacillus gasseri JV-V03]
 gi|300354187|gb|EFJ70058.1| tyrosine recombinase XerD [Lactobacillus gasseri JV-V03]
          Length = 302

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 49/295 (16%), Positives = 113/295 (38%), Gaps = 25/295 (8%)

Query: 67  KPTTLKWLISEYRK-SAHWGSLAVNSRISFESYFDQIIRKSGDFD-----YRKITTKHIR 120
           +  T+K  + +Y + S     L+ N+ IS+ +  ++ +    D +        +      
Sbjct: 3   QTQTMKDNLEDYLRFSQVERGLSPNTIISYRTDLEEYLDYLQDQNETSWEVDYLVVDAFL 62

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
           +  + +    +S  + ++S+R  ++W +RQ+ +  +P + ++ PK +       ++E++ 
Sbjct: 63  AAQKDKGKATTSISRMISSLRKFYQWLLRQDIIERDPLIKIDSPKSERRLPTALSEEEVD 122

Query: 181 QFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITV 235
           +  +        G + R   E L  +G+R S+        + +++  I+   K      V
Sbjct: 123 KLLAAPDTNTPLGIRDRAMLELLYATGMRVSELINLRTGDIHSDLKIIRVLGKGSKERLV 182

Query: 236 ELPDGFMKLL----------AMTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGVN 283
            + +  +  L           +   G+ T   F+NN   ++         K      G+ 
Sbjct: 183 PITEVALSWLEKYQKDVRDAQVLKSGQFTDVIFLNNHGHQLTRQAVWQKIKKYCQLVGIT 242

Query: 284 K--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
           K  + H +R   AT   + GA    +    G   +   + YT    +  L + N 
Sbjct: 243 KNVTPHTLRHTFATHLLENGADLRVVQEILGHSDITTTQIYTNLTQKHILEVYNQ 297


>gi|116629539|ref|YP_814711.1| integrase [Lactobacillus gasseri ATCC 33323]
 gi|238852689|ref|ZP_04643099.1| tyrosine recombinase XerD [Lactobacillus gasseri 202-4]
 gi|311110818|ref|ZP_07712215.1| tyrosine recombinase XerD [Lactobacillus gasseri MV-22]
 gi|116095121|gb|ABJ60273.1| tyrosine recombinase XerD subunit [Lactobacillus gasseri ATCC
           33323]
 gi|238834835|gb|EEQ27062.1| tyrosine recombinase XerD [Lactobacillus gasseri 202-4]
 gi|311065972|gb|EFQ46312.1| tyrosine recombinase XerD [Lactobacillus gasseri MV-22]
          Length = 302

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 49/296 (16%), Positives = 111/296 (37%), Gaps = 27/296 (9%)

Query: 67  KPTTLKWLISEYRK-SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK------ITTKHI 119
           +  T+K  + +Y + S     L+ N+ IS+ +  ++ +    D +         +    +
Sbjct: 3   QTQTMKDNLEDYLRFSQVERGLSPNTIISYRTDLEEYLDYLQDQNETSWEVDYLVVDAFL 62

Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
            +  +  K T +S  + ++S+R  ++W +RQ+ +  +P + ++ PK +       ++E++
Sbjct: 63  ATQKDKGKAT-TSISRMISSLRKFYQWLLRQDIIERDPLVKIDSPKSERRLPTALSEEEV 121

Query: 180 QQFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIIT 234
            +  +        G + R   E L  +G+R S+        +  ++  I+   K      
Sbjct: 122 DKLLAAPDTNTPLGIRDRAMLEVLYATGMRVSELINLRTGDIHADLKIIRVLGKGSKERL 181

Query: 235 VELPDGFMKLLAMTPIG------------KETFFINNDKQKMNATQFSIWFKAKATKAGV 282
           V + +  +  L                   +  F+NN   ++         K      G+
Sbjct: 182 VPITEVALSWLEKYQTDVRDAQVLKSGQFTDVIFLNNHGHQLTRQAVWQKIKKYCQLIGI 241

Query: 283 NK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
            K  + H +R   AT   + GA    +    G   +   + YT    +  L + N 
Sbjct: 242 TKNVTPHTLRHTFATHLLENGADLRVVQEILGHSDITTTQIYTNLTQKHILEVYNQ 297


>gi|327183467|gb|AEA31914.1| tyrosine recombinase xerD [Lactobacillus amylovorus GRL 1118]
          Length = 301

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 54/289 (18%), Positives = 108/289 (37%), Gaps = 27/289 (9%)

Query: 71  LKWLISEYRK-SAHWGSLAVNSRISFESYFDQ---IIRKSGDFDY---RKITTKHIRSGV 123
           L+  I +Y + S     L+ N+  ++    ++    I+K G   +          +    
Sbjct: 6   LQDQIDDYLRFSQVERGLSTNTISAYRQDLEEYLSFIKKEGVSSWPTEASDVDAFLARQR 65

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
           +  K T SS  + ++SMR  ++W  RQ    +NP L ++ PK++       ++E++ +  
Sbjct: 66  DLNKAT-SSISRLISSMRKFYQWLARQNIQKLNPMLEIDLPKKERRLPTALSREEVNRLL 124

Query: 184 S----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELP 238
                    G + R   E L  +G+R S+     +Q +  ++  I+   K      + + 
Sbjct: 125 EQPDVEQKLGLRDRAILETLYATGMRVSELINLELQDIHEDLGLIRVLGKGSKERLIPIS 184

Query: 239 DGFMKLLAM------------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284
              +  +              +    E  F+NN   K+         K     AG+ K  
Sbjct: 185 PVALHWIDKYQKQVRDPLILKSGKNDEHLFLNNRGGKLTRQAIWQMIKKYCQMAGITKDV 244

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           + H +R   AT   + GA    +    G   +   + YT  + +  L +
Sbjct: 245 TPHTLRHTFATHLLENGADLRVVQEILGHSDISTTQIYTNLSQKHILQV 293


>gi|325956642|ref|YP_004292054.1| tyrosine recombinase xerD [Lactobacillus acidophilus 30SC]
 gi|325333207|gb|ADZ07115.1| tyrosine recombinase xerD [Lactobacillus acidophilus 30SC]
          Length = 301

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 54/289 (18%), Positives = 107/289 (37%), Gaps = 27/289 (9%)

Query: 71  LKWLISEYRK-SAHWGSLAVNSRISFESYFDQ---IIRKSGDFDY---RKITTKHIRSGV 123
           L+  I +Y + S     L+ N+  ++    ++    I+K G   +          +    
Sbjct: 6   LQDQIDDYLRFSQVERGLSTNTISAYRQDLEEYLSFIKKEGMSSWPTEASDVDAFLARQR 65

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
           +  K T SS  + ++SMR  ++W  RQ    +NP L ++ PK++       + E++ +  
Sbjct: 66  DLNKAT-SSISRLISSMRKFYQWLARQNIQKLNPMLEIDLPKKERRLPTALSGEEVNRLL 124

Query: 184 S----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELP 238
                    G + R   E L  +G+R S+     +Q +  ++  I+   K      + + 
Sbjct: 125 EQPDVEQKLGLRDRAILETLYATGMRVSELINLELQDIHEDLGLIRVLGKGSKERLIPIS 184

Query: 239 DGFMKLLAM------------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284
              +  +              +    E  F+NN   K+         K     AG+ K  
Sbjct: 185 PVALHWIDKYQKQVRDPLILKSGKNDEHLFLNNRGGKLTRQAIWQMIKKYCQMAGITKDV 244

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           + H +R   AT   + GA    +    G   +   + YT  + +  L +
Sbjct: 245 TPHTLRHTFATHLLENGADLRVVQEILGHSDISTTQIYTNLSQKHILQV 293


>gi|315038190|ref|YP_004031758.1| tyrosine recombinase XerD [Lactobacillus amylovorus GRL 1112]
 gi|312276323|gb|ADQ58963.1| tyrosine recombinase XerD [Lactobacillus amylovorus GRL 1112]
          Length = 301

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 54/289 (18%), Positives = 108/289 (37%), Gaps = 27/289 (9%)

Query: 71  LKWLISEYRK-SAHWGSLAVNSRISFESYFDQ---IIRKSGDFDY---RKITTKHIRSGV 123
           L+  I +Y + S     L+ N+  ++    ++    I+K G   +          +    
Sbjct: 6   LQDQIDDYLRFSQVERGLSTNTISAYRQDLEEYLSFIKKEGMSSWPTEASDVDAFLARQR 65

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
           +  K T SS  + ++SMR  ++W  RQ    +NP L ++ PK++       ++E++ +  
Sbjct: 66  DLNKAT-SSISRLISSMRKFYQWLARQNIQKLNPMLEIDLPKKERRLPTALSREEVNRLL 124

Query: 184 S----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELP 238
                    G + R   E L  +G+R S+     +Q +  ++  I+   K      + + 
Sbjct: 125 EQPDVEQKLGLRDRAILETLYATGMRVSELINLELQDIHEDLGLIRVLGKGSKERLIPIS 184

Query: 239 DGFMKLLAM------------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284
              +  +              +    E  F+NN   K+         K     AG+ K  
Sbjct: 185 PVALHWIDKYQKQVRDPLILKSGKNDEHLFLNNRGGKLTRQAIWQMIKKYCQMAGITKDV 244

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           + H +R   AT   + GA    +    G   +   + YT  + +  L +
Sbjct: 245 TPHTLRHTFATHLLENGADLRVVQEILGHSDISTTQIYTNLSQKHILQV 293


>gi|56459934|ref|YP_155215.1| site-specific recombinase [Idiomarina loihiensis L2TR]
 gi|56178944|gb|AAV81666.1| Site-specific recombinase [Idiomarina loihiensis L2TR]
          Length = 300

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 57/271 (21%), Positives = 108/271 (39%), Gaps = 22/271 (8%)

Query: 88  AVNSRISFESYFDQIIR-----KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRV 142
           + N++ ++ S   +        K    D  ++  +        +  +P S  +FL+S + 
Sbjct: 26  SNNTQAAYRSDLRRYCEYLLSLKKSLMDTDEVVLQDYLLWRRMQGLSPRSTSRFLSSTKK 85

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKSFWSEGSQPRLAFEF 198
            F++AV+Q++VA++P   ++RPK         ++ED+    +Q  +    G + R   E 
Sbjct: 86  FFQFAVKQQWVAVDPTARLKRPKLPQSIPHSLSEEDVISLLEQPDTETPIGLRDRTMLEV 145

Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV--------ELPDGFMKLLAMTPI 250
           L  +GLR ++  R     L      ++    G    +        E  D ++K       
Sbjct: 146 LYATGLRVTELIRLQYDQLSRQQGLVRVIGKGNKERLVPLGEDALEWLDNYLKHGRPAIT 205

Query: 251 GKET--FFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHE 306
            K +   F+      +    F    K  A +AG+  + S H +R   AT   + GA    
Sbjct: 206 DKSSPWIFVTQRGSLLTRQAFWYRLKHYAEEAGIYAHLSPHTLRHAFATHLLNHGADLRV 265

Query: 307 LMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
           L    G   +   + YT+ A R RL   +++
Sbjct: 266 LQLLLGHSDLSTTQIYTQVA-RERLQALHAQ 295


>gi|295692872|ref|YP_003601482.1| tyrosine recombinase xerd [Lactobacillus crispatus ST1]
 gi|295030978|emb|CBL50457.1| Tyrosine recombinase xerD [Lactobacillus crispatus ST1]
          Length = 301

 Score =  167 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 51/292 (17%), Positives = 103/292 (35%), Gaps = 25/292 (8%)

Query: 67  KPTTLKWLISEYRK-SAHWGSLAVNSRISFESYFDQIIRKSGDF-----DYRKITTKHIR 120
           +   LK  I +Y + S     L+ N+  ++    ++      +                 
Sbjct: 2   EKNNLKDQIDDYLRYSQVERGLSDNTINAYRQDLEEFRTFVENEGMASWPTEASDVDAFL 61

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM- 179
           +         SS  + ++SMR  ++W  RQ    +NP L ++ PK++       ++ +M 
Sbjct: 62  ARQRDLNKATSSISRLISSMRKFYQWLARQNIQKLNPMLEIDLPKKERRLPTALSQAEMN 121

Query: 180 ---QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITV 235
              +Q  +    G + R   E L  +G+R S+     +Q L +N+  ++    G     +
Sbjct: 122 RLLEQPNTKRKLGIRDRAILETLYATGMRVSELINLELQDLHDNLGLVRVLGKGEKERLI 181

Query: 236 ELPDGFMKLLAM------------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
            +    +  +                   E  F+NN  +K+         K     A + 
Sbjct: 182 PISPVALDWIKKYENEVRDPLILQVGKSDEHIFLNNRGKKITRQAIWQMIKKYCQMAAIT 241

Query: 284 K--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           K  + H +R   AT   + GA    +    G   +   + YT  + +  L +
Sbjct: 242 KDVTPHTLRHTFATHLLENGADLRVVQEILGHSDISTTQIYTNLSQKQILNV 293


>gi|241896295|ref|ZP_04783591.1| site-specific recombinase XerD [Weissella paramesenteroides ATCC
           33313]
 gi|241870456|gb|EER74207.1| site-specific recombinase XerD [Weissella paramesenteroides ATCC
           33313]
          Length = 302

 Score =  167 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 50/289 (17%), Positives = 105/289 (36%), Gaps = 24/289 (8%)

Query: 65  RKKPTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQ-----IIRKSGDFDY-RKITTK 117
           + +    + ++ +Y         L+ N++ S++    Q     I  K        + T  
Sbjct: 2   KVQVGPFEDVLVDYLHYLTVERGLSANTKHSYQQDLVQFFQYLIAEKYDTLTVVDRFTIM 61

Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
                +E +  + ++ I+ ++++R  F++      +  NP   V+ PK+        T E
Sbjct: 62  AFLGQLEQKGKSRNTIIRMVSTLRKFFEFVQMNNLITSNPMDQVDSPKKAQHLPAVLTLE 121

Query: 178 DMQQFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTI 232
           +++            G + R   E +  +GLR S+     + +L  ++  I+T  K    
Sbjct: 122 EVEALLQVPDTNTPLGLRNRTILEVMYATGLRVSELVNLRLDNLHLDLGLIQTIGKGDKE 181

Query: 233 ITVELPDGFMKLLA----------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
             V + D  +K L                    F+N+   ++         K    +AG+
Sbjct: 182 RIVPIGDVAVKWLENYLNNSRPLLGKQQDPHVIFLNDHGHQLTRQGVWKLIKQWVKQAGI 241

Query: 283 NK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            K  S H +R   AT   + GA    +    G   +   + YT  +++ 
Sbjct: 242 TKDVSPHTLRHSFATHILENGADLRIVQELLGHADISTTQIYTHISNKR 290


>gi|260593346|ref|ZP_05858804.1| integrase/recombinase XerD [Prevotella veroralis F0319]
 gi|260534622|gb|EEX17239.1| integrase/recombinase XerD [Prevotella veroralis F0319]
          Length = 314

 Score =  167 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 52/275 (18%), Positives = 103/275 (37%), Gaps = 23/275 (8%)

Query: 73  WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTK-----HIRSGVESR 126
            ++S YR+        + N+  ++    D+++R     +   +  K        + +   
Sbjct: 9   DIVSRYRRYLKLEKGHSANTLDAYMRDLDKLLRYLAAENIDVLKVKLEDLEFFAASISDL 68

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
              P S  + L+ +R  +++ V   Y+ ++P   +E PK+        +  ++   +   
Sbjct: 69  GIGPRSLARILSGVRQFYRFLVLDGYLEVDPTELLESPKQPNHLPEVLSTAEVDLLEQAI 128

Query: 187 S----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241
                EG + R   E L   GLR S+     + +L      ++   K      V +    
Sbjct: 129 DLSKWEGHRNRAIIEVLFSCGLRVSELTHLTLSNLYIEEQYLRVLGKGSKERLVPISPRA 188

Query: 242 MKLL----------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289
           ++ L           + P  ++  F+N     +  T   I  K  A +AG+ K  S H +
Sbjct: 189 LEELSYWFDDRNKMDIKPGEEDYVFLNRRGHHLTRTMILIMIKRYAVEAGIKKTISPHTL 248

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           R   AT   + GA    + A  G +++   E YT 
Sbjct: 249 RHSFATSLLEGGADLRAIQAMLGHESIGTTEIYTH 283


>gi|227893483|ref|ZP_04011288.1| integrase-recombinase [Lactobacillus ultunensis DSM 16047]
 gi|227864708|gb|EEJ72129.1| integrase-recombinase [Lactobacillus ultunensis DSM 16047]
          Length = 303

 Score =  166 bits (421), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 52/289 (17%), Positives = 107/289 (37%), Gaps = 27/289 (9%)

Query: 71  LKWLISEYRK-SAHWGSLAVNSRISFESYFDQ---IIRKSGDFDY---RKITTKHIRSGV 123
           L+  I +Y + S     L+ N+  ++    ++    I K G   +          +    
Sbjct: 8   LQDQIDDYLRYSQVERGLSSNTISAYRQDLEEYLSFIEKEGMPSWPTEASDVDAFLARQR 67

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
           +  K T SS  + ++SMR  ++W  RQ    +NP L ++ PK++       T+E++ +  
Sbjct: 68  DLNKAT-SSISRLISSMRKFYQWLARQNIQKLNPMLEIDLPKKERRLPTALTQEEVNKLL 126

Query: 184 S----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELP 238
                    G + R   E L  +G+R S+     +Q L +++  ++   K      + + 
Sbjct: 127 EQPDVKRKLGLRDRAILETLYATGMRVSELINLELQDLHDDLGLVRVIGKGSKERLIPIS 186

Query: 239 DGFMKLLAM------------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NK 284
              +  +                   E  F+N+  + +         K     AG+  + 
Sbjct: 187 PVALNWIKKYEKEVRDPLILHVGQNDEHIFLNSRGKMLTRQAIWQMIKKYCQMAGIVKDV 246

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           + H +R   AT   + GA    +    G   +   + YT  + +  L +
Sbjct: 247 TPHTLRHTFATHLLENGADLRVVQEILGHSDISTTQIYTNLSQKHILQV 295


>gi|282852078|ref|ZP_06261436.1| tyrosine recombinase XerD [Lactobacillus gasseri 224-1]
 gi|282556838|gb|EFB62442.1| tyrosine recombinase XerD [Lactobacillus gasseri 224-1]
          Length = 296

 Score =  166 bits (420), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 47/288 (16%), Positives = 107/288 (37%), Gaps = 27/288 (9%)

Query: 75  ISEYRK-SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK------ITTKHIRSGVESRK 127
           + +Y + S     L+ N+ IS+ +  ++ +    D +         +    + +  +  K
Sbjct: 5   LEDYLRFSQVERGLSPNTIISYRTDLEEYLDYLQDQNETSWEVDYLVVDAFLATQKDKGK 64

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-- 185
            T +S  + ++S+R  ++W +RQ+ +  +P + ++ PK +       ++E++ +  +   
Sbjct: 65  AT-TSISRMISSLRKFYQWLLRQDIIERDPLVKIDSPKSERRLPTALSEEEVDKLLAAPD 123

Query: 186 --WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFM 242
                G + R   E L  +G+R S+        +  ++  I+   K      V + +  +
Sbjct: 124 TNTPLGIRDRAMLEVLYATGMRVSELINLRTGDIHADLKIIRVLGKGSKERLVPITEVAL 183

Query: 243 KLLAMTPIG------------KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288
             L                   +  F+NN   ++         K      G+ K  + H 
Sbjct: 184 SWLEKYQTDVRDAQVLKSGQFTDVIFLNNHGHQLTRQAVWQKIKKYCQLIGITKNVTPHT 243

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
           +R   AT   + GA    +    G   +   + YT    +  L + N 
Sbjct: 244 LRHTFATHLLENGADLRVVQEILGHSDITTTQIYTNLTQKHILEVYNQ 291


>gi|260427159|ref|ZP_05781138.1| phage integrase family protein [Citreicella sp. SE45]
 gi|260421651|gb|EEX14902.1| phage integrase family protein [Citreicella sp. SE45]
          Length = 296

 Score =  166 bits (420), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 51/288 (17%), Positives = 99/288 (34%), Gaps = 16/288 (5%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
               +   +I+E +++  W + +   R   E     +  K G  D   +  KH+   +++
Sbjct: 7   HARRSWSPIIAELKQTEKWANFSPRYRKDLEPILLYLDEKIGSKDVSLLRPKHVYEAMDA 66

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER---PKRKTEGIRPWTKEDMQQF 182
             H    A     ++ +L + A R+ +   NP   +ER   PK + +    W  + +Q+ 
Sbjct: 67  NAHRVRFANYIPVAITLLARLARRKGWRTDNPAEGIERLAVPKERQKPHYAWPDDAVQKM 126

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF- 241
           +   +E   P+L  E  + S  R  D               +   KTGT + +   +   
Sbjct: 127 REEGAE--LPKLILEIGIGSVQRPGDWVGFTWGDYDGESLRLVQNKTGTSLKLPCTEELK 184

Query: 242 ------MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSA 294
                    L   P+ +       D   M+    +   + +  + G+     H +R    
Sbjct: 185 QKLDAAKASLKAPPLPERPILARADGTSMSYYMLARIMREERARLGLSKYDLHALRYRGV 244

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGAD---RIRLGIKNSRRI 339
              A AG T  E+ +  G  +      Y   A    + +L      R 
Sbjct: 245 KELAYAGCTDDEIASYSGHMSKSMIRKYAGEARQEMQAKLAHAKRERF 292


>gi|304385052|ref|ZP_07367398.1| tyrosine recombinase XerD [Pediococcus acidilactici DSM 20284]
 gi|304329246|gb|EFL96466.1| tyrosine recombinase XerD [Pediococcus acidilactici DSM 20284]
          Length = 296

 Score =  165 bits (419), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 54/286 (18%), Positives = 110/286 (38%), Gaps = 24/286 (8%)

Query: 72  KWLISEYRKSAH-WGSLAVNSRISFE---SYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127
             LI++Y  +      L+ N+ +S+     +    +++    D + +    I + +++ K
Sbjct: 3   DDLINDYLHALKVERGLSDNTIVSYRQELRHLQNFLQEQHIADIKDVDRYTILNYLDALK 62

Query: 128 HT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
            T    SS+I  ++S+R  FK+ +  + +  NP ++++ PKR        T E++++   
Sbjct: 63  QTGRARSSSIHTISSLRKFFKYLLLNDQIQTNPMVNIDPPKRAQHLPSVLTTEEVERLLK 122

Query: 185 FW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPD 239
                   G + R   E +  +GLR S+     +  L   +  I    K      + + D
Sbjct: 123 VPDTSKPLGIRDRAILEVMYATGLRVSELIALNLNELHLEMGLIETVGKGNKQRIIPIGD 182

Query: 240 GFMKLLAM---TPIGKET-------FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287
             ++ L      P             F+N     +         KA+  KAG+ K  + H
Sbjct: 183 VAIQWLERYINGPRRALLGAKRYNEIFLNQHGHPLTRQGVWKNLKAQVQKAGIKKNITPH 242

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
            +R   AT   + GA    +    G   +   + YT    +  + +
Sbjct: 243 TLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHITQQRLVDV 288


>gi|227879087|ref|ZP_03996976.1| integrase-recombinase [Lactobacillus crispatus JV-V01]
 gi|256843076|ref|ZP_05548564.1| tyrosine recombinase XerD [Lactobacillus crispatus 125-2-CHN]
 gi|256850272|ref|ZP_05555701.1| integrase/recombinase [Lactobacillus crispatus MV-1A-US]
 gi|262046336|ref|ZP_06019298.1| tyrosine recombinase XerD [Lactobacillus crispatus MV-3A-US]
 gi|293379759|ref|ZP_06625891.1| tyrosine recombinase XerD [Lactobacillus crispatus 214-1]
 gi|312977261|ref|ZP_07789009.1| tyrosine recombinase XerD [Lactobacillus crispatus CTV-05]
 gi|227861328|gb|EEJ68958.1| integrase-recombinase [Lactobacillus crispatus JV-V01]
 gi|256614496|gb|EEU19697.1| tyrosine recombinase XerD [Lactobacillus crispatus 125-2-CHN]
 gi|256712909|gb|EEU27901.1| integrase/recombinase [Lactobacillus crispatus MV-1A-US]
 gi|260573207|gb|EEX29765.1| tyrosine recombinase XerD [Lactobacillus crispatus MV-3A-US]
 gi|290923668|gb|EFE00539.1| tyrosine recombinase XerD [Lactobacillus crispatus 214-1]
 gi|310895692|gb|EFQ44758.1| tyrosine recombinase XerD [Lactobacillus crispatus CTV-05]
          Length = 301

 Score =  165 bits (419), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 50/288 (17%), Positives = 102/288 (35%), Gaps = 25/288 (8%)

Query: 71  LKWLISEYRK-SAHWGSLAVNSRISFESYFDQIIRKSGDF-----DYRKITTKHIRSGVE 124
           LK  I +Y + S     L+ N+  ++    ++      +                 +   
Sbjct: 6   LKDQIDDYLRYSQVERGLSDNTINAYRQDLEEFQTFVENEGMASWPTEASDVDAFLARQR 65

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----Q 180
                 SS  + ++SMR  ++W  RQ    +NP L ++ PK++       ++ +M    +
Sbjct: 66  DLNKATSSISRLISSMRKFYQWLARQNIQKLNPMLEIDLPKKERRLPTALSQAEMNRLLE 125

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPD 239
           Q  +    G + R   E L  +G+R S+     +Q L +++  ++    G     + +  
Sbjct: 126 QPNTKRKLGIRDRAILETLYATGMRVSELINLELQDLHDDLGLVRVLGKGEKERLIPISP 185

Query: 240 GFMKLLAM------------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--S 285
             +  +                   E  F+NN  +K+         K     A + K  +
Sbjct: 186 VALDWIKKYENEVRDPLILQVGKSDEHIFLNNRGKKITRQAIWQMIKKYCQMAAITKDVT 245

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
            H +R   AT   + GA    +    G   +   + YT  + +  L +
Sbjct: 246 PHTLRHTFATHLLENGADLRVVQEILGHSDISTTQIYTNLSQKQILNV 293


>gi|213969060|ref|ZP_03397199.1| integrase/recombinase XerD [Pseudomonas syringae pv. tomato T1]
 gi|301384045|ref|ZP_07232463.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           tomato Max13]
 gi|302058751|ref|ZP_07250292.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           tomato K40]
 gi|302131712|ref|ZP_07257702.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           tomato NCPPB 1108]
 gi|213926058|gb|EEB59614.1| integrase/recombinase XerD [Pseudomonas syringae pv. tomato T1]
          Length = 298

 Score =  165 bits (419), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 55/289 (19%), Positives = 115/289 (39%), Gaps = 28/289 (9%)

Query: 74  LISEYRKSAHW--GSLAVNSRISFESYFD----QIIRKSGDFDY--RKITTKHIRSGVES 125
           LI ++   A W    L+ N+R S+ S        +  ++ D     R++   H+ +    
Sbjct: 8   LIDQFL-DALWLEKGLSDNTRDSYRSDLALFNGWLQERNVDLPGAGREVILDHL-AWRVE 65

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
             + P S  +FL+  R  +++ +R++ ++++P L ++ P+      +  ++ D++   + 
Sbjct: 66  NAYKPRSTARFLSGARGFYRYLLREKLISVDPTLQIDMPQLGKPLPKSLSEADVEALLAA 125

Query: 186 ----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDG 240
                  G + R   E L   GLR ++     ++ +      ++    G+    V + + 
Sbjct: 126 PDLSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERLVPMGEE 185

Query: 241 FMKLLAMTPIGK----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHG 288
            +  +     G           +  F +    +M    F    K +AT AG+ KS   H 
Sbjct: 186 AIVWVERYMRGARDELLGGKPSDVLFPSTRGDQMTRQTFWHRIKHQATVAGIGKSLSPHT 245

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
           +R   AT   + GA    +    G   +   + YT  A R RL   +++
Sbjct: 246 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARLQEMHAK 293


>gi|116492850|ref|YP_804585.1| tyrosine recombinase XerD subunit [Pediococcus pentosaceus ATCC
           25745]
 gi|116103000|gb|ABJ68143.1| tyrosine recombinase XerD subunit [Pediococcus pentosaceus ATCC
           25745]
          Length = 295

 Score =  165 bits (419), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 59/285 (20%), Positives = 111/285 (38%), Gaps = 24/285 (8%)

Query: 73  WLISEYRKSAH-WGSLAVNSRISFE---SYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128
            LI++Y  S      L+ N+ IS+     + +  + K    D +KI    I   ++  K 
Sbjct: 3   DLINDYLHSLKVERGLSDNTIISYRQELRHLNDYLTKEKITDIKKIDRYAILDYLDELKK 62

Query: 129 T---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           T    SS+I  ++S+R  FK+ +  + + ++P ++++ PKR        T  ++++    
Sbjct: 63  TGRARSSSIHTISSLRKFFKYLLIVDKIDVDPMVNIDPPKRAHHLPSVLTTAEVEKLLQV 122

Query: 186 ----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240
                  G + R   E +  +GLR S+     +  L   +  I+T  K      + + D 
Sbjct: 123 PNTNEPLGMRDRTILEVMYATGLRVSELITLNLNELHLEMGLIETIGKGNKKRIIPIGDV 182

Query: 241 FMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288
            +K L     G              F+N     +         KA+  KAG+ K  + H 
Sbjct: 183 AIKWLNRYINGPRRILLGDKKYNEIFLNQHGHPLTRQGIWKNLKAQVKKAGIEKNITPHT 242

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           +R   AT   + GA    +    G   +   + YT    +  + +
Sbjct: 243 LRHSFATHLLENGADLRIVQELLGHADISTTQIYTHITQQRLVDV 287


>gi|148549356|ref|YP_001269458.1| phage integrase family protein [Pseudomonas putida F1]
 gi|148513414|gb|ABQ80274.1| phage integrase family protein [Pseudomonas putida F1]
          Length = 326

 Score =  165 bits (418), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 69/316 (21%), Positives = 121/316 (38%), Gaps = 32/316 (10%)

Query: 17  RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76
           +HG   Y  RKG   R+             Y  AL     K        + P  +   + 
Sbjct: 17  KHG-AYYLVRKGKWERL----------DKDYQGALLA-YAKIMGGKGQGEMPRLIDDALD 64

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF 136
             RK      LA N+   +E+  +++ +   +F+ R++  +H+ +       TP+ A + 
Sbjct: 65  AMRK-----RLAENTIKQYEAAAEKLKKYLAEFEPRQVLPRHVAALKLHMSDTPNMANRV 119

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ-PRLA 195
           ++ +R++F +A+ Q+ V  NPC  ++R   + +  R  T E+   F +     S   R  
Sbjct: 120 ISFLRMVFNYALEQQIVDSNPCTGIKR-HTEKKRDRYITDEE---FAAICDAASPYIRSI 175

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT-----PI 250
            E    +G R  D     +  +     +   QKTG  + V +     +L+A T      +
Sbjct: 176 LEMCYLTGQRIGDVLAIKLSDISEKGIAFDQQKTGAKLIVGMTPDLEQLIARTKAIPRKV 235

Query: 251 GKETFFINN-DKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELM 308
              T F      + ++       FK    KA V   + H +R  S T + D G  A +L 
Sbjct: 236 RGLTLFCTRGGGKPVSYETVKDAFKKACEKAKVTGATIHDLRAKSLTDTDDQGNDAQKL- 294

Query: 309 ATYGWKTVDQAETYTK 324
              G       E Y +
Sbjct: 295 --GGHTNAKMTERYLR 308


>gi|237800088|ref|ZP_04588549.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331022943|gb|EGI03000.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 298

 Score =  165 bits (418), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 56/289 (19%), Positives = 114/289 (39%), Gaps = 28/289 (9%)

Query: 74  LISEYRKSAHW--GSLAVNSRISFESYFD----QIIRKSGDFDY--RKITTKHIRSGVES 125
           LI  +   A W    L+ N+R S+ S        +  ++ D     R++   H+ +    
Sbjct: 8   LIDRFL-DALWLEKGLSDNTRDSYRSDLALFNGWLQERNVDLPVAGREVILDHL-AWRVE 65

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
             + P S  +FL+  R  +++ +R++ +A++P L ++ P+      +  ++ D++   + 
Sbjct: 66  NAYKPRSTARFLSGARGFYRYLLREKLIAVDPTLQIDMPQLGKPLPKSLSEADVEALLAA 125

Query: 186 ----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDG 240
                  G + R   E L   GLR ++     ++ +      ++    G+    V + + 
Sbjct: 126 PDLSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERLVPMGEE 185

Query: 241 FMKLLAMTPIGK----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHG 288
            +  +     G           +  F +    +M    F    K +AT AG+ KS   H 
Sbjct: 186 AIVWVERYMRGARDELLGGKPSDVLFPSTRGDQMTRQTFWHRIKHQATVAGIGKSLSPHT 245

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
           +R   AT   + GA    +    G   +   + YT  A R RL   +++
Sbjct: 246 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARLQEMHAK 293


>gi|302185529|ref|ZP_07262202.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           syringae 642]
          Length = 298

 Score =  165 bits (418), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 55/288 (19%), Positives = 110/288 (38%), Gaps = 26/288 (9%)

Query: 74  LISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESR 126
           LI ++   A W    L+ N+R S+ S          + +   I+          +     
Sbjct: 8   LIDQFL-DALWLEKGLSDNTRDSYRSDLALFHGWLQERNVDLISAGREVILDHLAWRVEN 66

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185
            + P S  +FL+  R  +++ +R++ ++++P L ++ P+      +  ++ D++   +  
Sbjct: 67  AYKPRSTARFLSGARGFYRYLLREKLISVDPTLQIDMPQLGKPLPKSLSEADVEALLAAP 126

Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDG- 240
                 G + R   E L   GLR ++     ++ +      ++    G+    V + +  
Sbjct: 127 DLSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERLVPMGEES 186

Query: 241 -------FMKLLAMTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289
                            GK +   F +   ++M    F    K +AT AG+ KS   H +
Sbjct: 187 IVWVERYLRGARDELLGGKPSDVLFPSTRGEQMTRQTFWHRIKHQATVAGIGKSLSPHTL 246

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
           R   AT   + GA    +    G   +   + YT  A R RL   ++R
Sbjct: 247 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARLQEMHAR 293


>gi|282879077|ref|ZP_06287837.1| putative tyrosine recombinase XerD [Prevotella buccalis ATCC 35310]
 gi|281298811|gb|EFA91220.1| putative tyrosine recombinase XerD [Prevotella buccalis ATCC 35310]
          Length = 321

 Score =  165 bits (418), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 52/278 (18%), Positives = 106/278 (38%), Gaps = 23/278 (8%)

Query: 70  TLKWLISEYRKSAHW-GSLAVNSRISFESYFDQII-----RKSGDFDYRKITTKHIRSGV 123
           T   ++  Y +      + + N+ I++++    ++     ++    D R    +H    +
Sbjct: 7   TTTDIVKSYTRYLKLERNYSPNTLIAYQNDLGWLLSFCEQQEISPLDVRLEDLQHFAGQL 66

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
                 P+S  + L+ +R  +++ V   Y+  +P   +E P+         + E++   +
Sbjct: 67  HEHDIGPTSQARILSGVRSFYRFLVLDGYIEQDPTELLESPRLGEHLPEVLSTEEVDMIE 126

Query: 184 SFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELP 238
           +       EG + +   E L   GLR S+     + +L  +   I+ T K      V + 
Sbjct: 127 NSIDLSKPEGQRNKAIIEVLFSCGLRVSELVNLQLSNLYLDEGFIRVTGKGNKERLVPIS 186

Query: 239 DGF----------MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286
                          L+ + P  ++  F+N     +  T   I  K +A +AG+ K  S 
Sbjct: 187 PKAIKELNLWFLDRNLMKIKPGEQDYVFLNRRGAHLTRTMILIMLKRQAQEAGIQKTISP 246

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           H +R   AT     GA    +    G +++   E YT 
Sbjct: 247 HTLRHSFATELLKGGADLRAIQVMLGHESIGTTEIYTH 284


>gi|302382463|ref|YP_003818286.1| integrase [Brevundimonas subvibrioides ATCC 15264]
 gi|302193091|gb|ADL00663.1| integrase family protein [Brevundimonas subvibrioides ATCC 15264]
          Length = 402

 Score =  165 bits (418), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 75/373 (20%), Positives = 132/373 (35%), Gaps = 39/373 (10%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
           PFV + R  +G +  YFR+G  R   L  P  S  + A + A+     K     + R   
Sbjct: 16  PFVQRVRKPNGDVHLYFRRGAFREGPLKSPDGSPELKAEIDAILERVRKASDAIA-RPAA 74

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128
            T+  ++  Y KSA + SLA  ++  ++ Y D++I  +GD    ++T   +    ++   
Sbjct: 75  GTVGGMLKAYNKSAEFLSLARITQRGYQDYIDELIADTGDLLLSEVTRSWVIGMRDAWAL 134

Query: 129 TP-SSAIQFLTSMRVLFKWAVRQE---YVAINP---CLSVERPKRKTEGIRPWTKEDMQQ 181
              ++A + +  ++     A+  +    +  +P      V RP    E    W   +++ 
Sbjct: 135 RGHNAANKRMQVLKNALMPAIEDDTDQRIQGDPFHKVRKVRRPHDAGEAHPAWELAEVEI 194

Query: 182 FKSFWSEGSQPRLAFEFLL--YSGLRCSDSCRAGVQHLQNNI---------FSIKTQKTG 230
                    QP LA    L  Y G R        +                    T K  
Sbjct: 195 AIEEAIRRDQPGLARAIALGRYGGFRRGTIVSIPLNARTLGRDGRGEPETRLVWITSKRQ 254

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK--------ATKAGV 282
            +           ++A TP    T   N      +  QF    +            +A +
Sbjct: 255 VLSDKREDARLAAVIARTPNRALTIAYNKRGDPFSVRQFDQALERLLDRLAADGKIRATI 314

Query: 283 NKS------------AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
            ++             HG+R       A+AGA+  E+MA     +   A+ Y + A R +
Sbjct: 315 KRTSDGRDVVVCPLTIHGLRHARGVELAEAGASDAEIMAQLEHASDAAAKIYRRQAQRRK 374

Query: 331 LGIKNSRRISSVV 343
           +      RI +VV
Sbjct: 375 MADAGQDRIDNVV 387


>gi|270291303|ref|ZP_06197525.1| tyrosine recombinase XerD [Pediococcus acidilactici 7_4]
 gi|270280149|gb|EFA25985.1| tyrosine recombinase XerD [Pediococcus acidilactici 7_4]
          Length = 295

 Score =  165 bits (418), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 54/286 (18%), Positives = 109/286 (38%), Gaps = 24/286 (8%)

Query: 72  KWLISEYRKSAH-WGSLAVNSRISFE---SYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127
             LI++Y  +      L+ N+ +S+     +    +++    D + +    I + +++ K
Sbjct: 2   DDLINDYLHALKVERGLSDNTIVSYRQELRHLQNFLQEQHIADIKDVDRYTILNYLDALK 61

Query: 128 HT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
            T    SS+I  ++S+R  FK+ +  + +  NP  +++ PKR        T E++++   
Sbjct: 62  QTGRARSSSIHTISSLRKFFKYLLLNDQIQTNPMANIDPPKRAQHLPSVLTTEEVERLLK 121

Query: 185 FW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPD 239
                   G + R   E +  +GLR S+     +  L   +  I    K      + + D
Sbjct: 122 VPDTSKPLGIRDRAILEVMYATGLRVSELIALNLNELHLEMGLIETVGKGNKQRIIPIGD 181

Query: 240 GFMKLLAM---TPIGKET-------FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287
             ++ L      P             F+N     +         KA+  KAG+ K  + H
Sbjct: 182 VAIQWLERYINGPRRALLGAKRYNEIFLNQHGHPLTRQGVWKNLKAQVQKAGIKKNITPH 241

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
            +R   AT   + GA    +    G   +   + YT    +  + +
Sbjct: 242 TLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHITQQRLVDV 287


>gi|288800351|ref|ZP_06405809.1| integrase/recombinase XerD [Prevotella sp. oral taxon 299 str.
           F0039]
 gi|288332564|gb|EFC71044.1| integrase/recombinase XerD [Prevotella sp. oral taxon 299 str.
           F0039]
          Length = 311

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 62/306 (20%), Positives = 116/306 (37%), Gaps = 28/306 (9%)

Query: 66  KKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIR--KSGDFDYRKITTK---HI 119
           K+  T+  +I  Y +      + ++N+  ++++  + +I   +  + D  K+      H 
Sbjct: 3   KENQTIAKVIRSYLRYLKLERNYSINTIEAYKNDLEHLITYCQENNRDVLKMQIADFEHF 62

Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
              +  RK   SS  + L+ +R  +++ V    +  NP   +E P          + E++
Sbjct: 63  AFILHERKIGASSQARILSGVRSFYRYLVIDGILEDNPTELLESPILGEHLPEVLSTEEV 122

Query: 180 QQFKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIIT 234
            Q ++       EG + R   E L   GLR S+     + ++      I+   K      
Sbjct: 123 DQLQNSIDLSKWEGHRNRAIIEILFSCGLRVSELINLKLSNIYIIERYIRVIGKGSKERL 182

Query: 235 VELPDGF----------MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284
           + + D              ++ + P  ++  F+N     +  T   I  K +A  AG+ K
Sbjct: 183 IPISDKALYELELWFRDRNIMNIKPGEQDYVFLNRRGAHLTRTMILIMIKKQAELAGIKK 242

Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
             S H +R   AT     GA    + A  G ++V   E YT   DR  L     + I   
Sbjct: 243 TISPHTLRHSFATELLRGGADLIAIQAMLGHESVSTTEIYTH-IDRESL----RKAIIEH 297

Query: 343 VDSDDP 348
              + P
Sbjct: 298 HPRNKP 303


>gi|71736133|ref|YP_273616.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71556686|gb|AAZ35897.1| tyrosine recombinase XerD [Pseudomonas syringae pv. phaseolicola
           1448A]
          Length = 298

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 55/289 (19%), Positives = 114/289 (39%), Gaps = 28/289 (9%)

Query: 74  LISEYRKSAHW--GSLAVNSRISFESYFD----QIIRKSGDFDY--RKITTKHIRSGVES 125
           LI  +   A W    L+ N+R S+ S        +  ++ D     R++   H+ +    
Sbjct: 8   LIDRFL-DALWLEKGLSDNTRDSYRSDLALFNGWLQERNADLPSAGREVILDHL-AWRVE 65

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
             + P S  +FL+  R  +++ +R++ ++++P L ++ P+      +  ++ D++   + 
Sbjct: 66  NAYKPRSTARFLSGARGFYRYLLREKLISVDPTLQIDMPQLGKPLPKSLSEADVEALLAA 125

Query: 186 ----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDG 240
                  G + R   E L   GLR ++     ++ +      ++    G+    V + + 
Sbjct: 126 PDLSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERLVPMGEE 185

Query: 241 FMKLLAMTPIGK----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHG 288
            +  +     G           +  F +    +M    F    K +AT AG+ KS   H 
Sbjct: 186 AIVWVERYLRGARDELLGGKPSDVLFPSTRGDQMTRQTFWHRIKHQATVAGIGKSLSPHT 245

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
           +R   AT   + GA    +    G   +   + YT  A R RL   +++
Sbjct: 246 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARLQELHAK 293


>gi|289625892|ref|ZP_06458846.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289646210|ref|ZP_06477553.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|298488278|ref|ZP_07006311.1| Site-specific recombinase XerD [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298157217|gb|EFH98304.1| Site-specific recombinase XerD [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|330867528|gb|EGH02237.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 298

 Score =  164 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 55/289 (19%), Positives = 114/289 (39%), Gaps = 28/289 (9%)

Query: 74  LISEYRKSAHW--GSLAVNSRISFESYFD----QIIRKSGDFDY--RKITTKHIRSGVES 125
           LI  +   A W    L+ N+R S+ S        +  ++ D     R++   H+ +    
Sbjct: 8   LIDRFL-DALWLEKGLSDNTRDSYRSDLALFNGWLQERNVDLPSAGREVILDHL-AWRVE 65

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
             + P S  +FL+  R  +++ +R++ ++++P L ++ P+      +  ++ D++   + 
Sbjct: 66  NAYKPRSTARFLSGARGFYRYLLREKLISVDPTLQIDMPQLGKPLPKSLSEADVEALLAA 125

Query: 186 ----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDG 240
                  G + R   E L   GLR ++     ++ +      ++    G+    V + + 
Sbjct: 126 PDLSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERLVPMGEE 185

Query: 241 FMKLLAMTPIGK----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHG 288
            +  +     G           +  F +    +M    F    K +AT AG+ KS   H 
Sbjct: 186 AIVWVERYLRGARDELLGGKPSDVLFPSTRGDQMTRQTFWHRIKHQATVAGIGKSLSPHT 245

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
           +R   AT   + GA    +    G   +   + YT  A R RL   +++
Sbjct: 246 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARLQEMHAK 293


>gi|330964079|gb|EGH64339.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 298

 Score =  164 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 56/289 (19%), Positives = 117/289 (40%), Gaps = 28/289 (9%)

Query: 74  LISEYRKSAHW--GSLAVNSRISFESYFD----QIIRKSGDFDY--RKITTKHIRSGVES 125
           LI ++  +  W    L+ N+R S+ S        +  ++ D     R++   H+   V+ 
Sbjct: 8   LIDQFLDTL-WLEKGLSDNTRDSYRSDLALFNGWLQERNVDLPSAGREVILDHLAWRVD- 65

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
             + P S  +FL+  R  +++ +R++ +A++P L ++ P+      +  ++ D++   + 
Sbjct: 66  NAYKPRSTARFLSGARGFYRYLLREKLIAVDPTLQIDMPQLGKPLPKSLSEADVEALLAA 125

Query: 186 ----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDG 240
                  G + R   E L   GLR ++     ++ +      ++    G+    V + + 
Sbjct: 126 PDLSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERLVPMGEE 185

Query: 241 FMKLLAMTPIGK----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHG 288
            +  +     G           +  F +    +M    F    K +AT AG++KS   H 
Sbjct: 186 AIVWVERYMRGARDELLGGKPSDVLFPSTRGDQMTRQTFWHRIKHQATVAGISKSLSPHT 245

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
           +R   AT   + GA    +    G   +   + YT  A R RL   +++
Sbjct: 246 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARLQEMHAK 293


>gi|330936913|gb|EGH41038.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           pisi str. 1704B]
          Length = 298

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 54/288 (18%), Positives = 109/288 (37%), Gaps = 26/288 (9%)

Query: 74  LISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESR 126
           LI  +   A W    L+ N+R S+ S          + +   I+          +     
Sbjct: 8   LIDRFL-DALWLEKGLSDNTRDSYRSDLALFNGWLQERNVDLISAGREVILDHLAWRVEN 66

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185
            + P S  +FL+ +R  +++ +R++ ++++P L ++ P+      +  ++ D++   +  
Sbjct: 67  AYKPRSTARFLSGVRGFYRYLLREKLISVDPTLQIDMPQLGKPLPKSLSEADVEALLAAP 126

Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDG- 240
                 G + R   E L   GLR ++     ++ +      ++    G+    V + +  
Sbjct: 127 DLSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERLVPMGEES 186

Query: 241 -------FMKLLAMTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289
                            GK +   F +    +M    F    K +AT AG+ KS   H +
Sbjct: 187 IVWVERYLRGARDELLGGKPSDVLFPSTRGDQMTRQTFWHRIKHQATVAGIGKSLSPHTL 246

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
           R   AT   + GA    +    G   +   + YT  A R RL   +++
Sbjct: 247 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARLQELHAK 293


>gi|330959145|gb|EGH59405.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 298

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 58/289 (20%), Positives = 116/289 (40%), Gaps = 28/289 (9%)

Query: 74  LISEYRKSAHW--GSLAVNSRISFESYFD----QIIRKSGDFDY--RKITTKHIRSGVES 125
           LI ++   A W    L+ N+R S+ S        +  ++ D     R++   H+   V+ 
Sbjct: 8   LIDQFL-DALWLEKGLSDNTRDSYRSDLALFNGWLQERNVDLPSAGREVILDHLAWRVD- 65

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
             + P S  +FL+  R  +++ +R++ +AI+P L ++ P+      +  ++ D++   + 
Sbjct: 66  NAYKPRSTARFLSGARGFYRYLLREKLIAIDPTLQIDMPQLGKPLPKSLSEADVEALLAA 125

Query: 186 ----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDG 240
                  G + R   E L   GLR ++     ++ +      ++    G+    V + + 
Sbjct: 126 PDLSEPIGQRDRAVLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERLVPMGEE 185

Query: 241 FMKLLAMTPIGK----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHG 288
            +  +     G           +  F +    +M    F    K +AT AG+ KS   H 
Sbjct: 186 AIVWVERYLRGARDELLGGKPSDVLFPSTRGDQMTRQTFWHRIKHQATVAGIGKSLSPHT 245

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
           +R   AT   + GA    +    G   +   + YT  A R RL   +++
Sbjct: 246 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARLQEIHAK 293


>gi|150397133|ref|YP_001327600.1| hypothetical protein Smed_1931 [Sinorhizobium medicae WSM419]
 gi|150028648|gb|ABR60765.1| hypothetical protein Smed_1931 [Sinorhizobium medicae WSM419]
          Length = 388

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 54/319 (16%), Positives = 105/319 (32%), Gaps = 22/319 (6%)

Query: 34  RLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKS--AHWGSLAVNS 91
           RLP      F P        +     +I   R+     K L+  ++      W  LA ++
Sbjct: 65  RLPDLKSKEFWPE------ATKAHEAFIRRGRQGIKDFKALVEAFQSETNPFWTKLAAST 118

Query: 92  RISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQE 151
           +  + +  D I    GD     +TT   +  +++   TP+ A QF   +  L  W   + 
Sbjct: 119 QRGYRTSGDIIKETWGDDLPVDLTTVDAQDAIDALGETPAKANQFRAFLSRLMAWGASRG 178

Query: 152 YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCR 211
           Y   N     E+     E   PW     +            ++      ++G R  D   
Sbjct: 179 YCKTNVVEMTEKIP-GGEPWVPWPNWAFEILLEHAP--FHMQMIAMSAFFTGQRQGDVLA 235

Query: 212 AGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ--- 268
                   N  +++ QKTG  + + +   + K +   P    +  ++   +  +      
Sbjct: 236 MTKPKAGENTIAVRAQKTGNTVWIPIHFAYRKWIDRVPTSD-SVMLHAGARATSYKSPDG 294

Query: 269 -FSIWFKAKATKAGVNKS-----AHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
             + W K  A  A           HG+RK +     + G T +++ A     +    + Y
Sbjct: 295 FRTEWQKLMAKDAFKPFRENRIVFHGLRKNAVINLLEVGCTENQVGAICN-MSAQMVQHY 353

Query: 323 TKGADRIRLGIKNSRRISS 341
            +      L     + + +
Sbjct: 354 GREVVLRSLAKDAMKLMEA 372


>gi|299133965|ref|ZP_07027159.1| integrase family protein [Afipia sp. 1NLS2]
 gi|298591801|gb|EFI52002.1| integrase family protein [Afipia sp. 1NLS2]
          Length = 169

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 50/148 (33%), Positives = 74/148 (50%)

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254
            F+  LY+GLR  D+ R G QH+++ I ++ T+KTG  +T+ +       L   P G   
Sbjct: 1   MFDIFLYTGLRRGDAARLGRQHVRDGIITLDTEKTGVRVTLPVLPELQATLDAGPTGDLA 60

Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWK 314
           F        M        F+     AGV KSAHG+RK +AT +A+ GAT  +L A +GW+
Sbjct: 61  FIATASGNPMAKESVGTLFREACLAAGVRKSAHGLRKAAATNAANHGATVAQLEAIFGWE 120

Query: 315 TVDQAETYTKGADRIRLGIKNSRRISSV 342
               A  YT+ A+R  L      ++S  
Sbjct: 121 GGRMASLYTRSANRKFLAASAMSKLSRT 148


>gi|77457252|ref|YP_346757.1| site-specific tyrosine recombinase XerD [Pseudomonas fluorescens
           Pf0-1]
 gi|77381255|gb|ABA72768.1| integrase/recombinase [Pseudomonas fluorescens Pf0-1]
          Length = 298

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 59/290 (20%), Positives = 114/290 (39%), Gaps = 30/290 (10%)

Query: 74  LISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESR 126
           LI ++   A W    L+ N+R ++ S          D     I           +    +
Sbjct: 8   LIDQFL-DALWLEKGLSDNTRDAYRSDLALFNGWLQDKGLELINAGRELILDHLAWRLEQ 66

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            + P S  +FL+ +R  +++ +R++ ++++P L V+ P+      +  ++ D++      
Sbjct: 67  NYKPRSTARFLSGVRGFYRYLLREKLISVDPTLRVDMPQLGRPLPKSLSEADVEALLKAP 126

Query: 187 S----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---------- 232
                 G + R   E L   GLR ++     ++ +      ++    G+           
Sbjct: 127 DLSEAIGQRDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERLVPMGEEA 186

Query: 233 -ITVE--LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AH 287
            + VE  L DG  +LL   P   +  F +   ++M    F    K +A  AG++KS   H
Sbjct: 187 IVWVERYLRDGRGELLGGRPS--DVLFPSQRGEQMTRQTFWHRIKHQAKVAGISKSLSPH 244

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
            +R   AT   + GA    +    G   +   + YT  A R RL   +++
Sbjct: 245 TLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARLQDLHAK 293


>gi|28868685|ref|NP_791304.1| integrase/recombinase XerD [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|28851924|gb|AAO54999.1| integrase/recombinase XerD [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|331016306|gb|EGH96362.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 298

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 55/289 (19%), Positives = 114/289 (39%), Gaps = 28/289 (9%)

Query: 74  LISEYRKSAHW--GSLAVNSRISFESYFD----QIIRKSGDFDY--RKITTKHIRSGVES 125
           LI  +   A W    L+ N+R S+ S        +  ++ D     R++   H+ +    
Sbjct: 8   LIDRFL-DALWLEKGLSDNTRDSYRSDLALFNGWLQERNVDLPGAGREVILDHL-AWRVE 65

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
             + P S  +FL+  R  +++ +R++ ++++P L ++ P+      +  ++ D++   + 
Sbjct: 66  NAYKPRSTARFLSGARGFYRYLLREKLISVDPTLQIDMPQLGKPLPKSLSEADVEALLAA 125

Query: 186 ----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDG 240
                  G + R   E L   GLR ++     ++ +      ++    G+    V + + 
Sbjct: 126 PDLSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERLVPMGEE 185

Query: 241 FMKLLAMTPIGK----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHG 288
            +  +     G           +  F +    +M    F    K +AT AG+ KS   H 
Sbjct: 186 AIVWVERYMRGARDELLGGKPSDVLFPSTRGDQMTRQTFWHRIKHQATVAGIGKSLSPHT 245

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
           +R   AT   + GA    +    G   +   + YT  A R RL   +++
Sbjct: 246 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARLQEMHAK 293


>gi|322381748|ref|ZP_08055702.1| site-specific tyrosine recombinase XerD-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321154136|gb|EFX46458.1| site-specific tyrosine recombinase XerD-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 298

 Score =  164 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 52/263 (19%), Positives = 104/263 (39%), Gaps = 24/263 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRK---HTPSSAIQFLT 138
             LA N+  S++    Q        G   + +    H+ + + + K     P++  + L 
Sbjct: 16  RRLAPNTVESYKKDLAQYADFLSSEGILAWEETQRVHVITYMNNLKQLGRAPATISRTLV 75

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRL 194
           S+R L+ + +R++ + ++P   VE PK +T+     T E+M       + G+    + + 
Sbjct: 76  SIRALYHYLIREQVMTLDPSGQVESPKAETKIPVILTVEEMDNLLGVPNTGTSSGLRDKA 135

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVEL-----------PDGFM 242
             E L  +G+R S+        +  ++  ++   TG     V +            +   
Sbjct: 136 MLELLYATGIRVSELITLNKGDIYADLGYVRCTGTGGKERIVPMGKVATLWIQRYLNEAR 195

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
           + L       +  F+N+   +M    F    K  AT+AG++K  + H +R   AT   + 
Sbjct: 196 EALLKEGKPDKALFLNHIGTRMTRQGFWKMMKKYATEAGIHKEITPHTLRHSFATHLLEN 255

Query: 301 GATAHELMATYGWKTVDQAETYT 323
           GA    +    G   +   + YT
Sbjct: 256 GADLRAVQELLGHSDLSTTQRYT 278


>gi|330807709|ref|YP_004352171.1| Site-specific tyrosine recombinase XerD [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327375817|gb|AEA67167.1| Site-specific tyrosine recombinase XerD [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 298

 Score =  164 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 59/290 (20%), Positives = 114/290 (39%), Gaps = 30/290 (10%)

Query: 74  LISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESR 126
           LI ++   A W    L+ N+R ++ S          +     I           +    +
Sbjct: 8   LIDQFL-DALWLEKGLSDNTRDAYRSDLALFNGWLQENHLELINAGRELILDHLAWRLEQ 66

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            + P S  +FL+ +R  +++ +R++ +A++P L VE P+      +  ++ D++   +  
Sbjct: 67  NYKPRSTARFLSGLRGFYRYLLREKLIAVDPTLRVEMPQLGRPLPKSLSEADVEALLAAP 126

Query: 187 S----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---------- 232
                 G + R   E L   GLR ++     ++ +      ++    G+           
Sbjct: 127 DLSEAIGQRDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERLVPMGEEA 186

Query: 233 -ITVE--LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AH 287
            + VE  + D   +LL   P   +  F +   ++M    F    K +A  AG+NKS   H
Sbjct: 187 IVWVERYMRDARHELLGGRPS--DVLFPSLRGEQMTRQTFWHRIKHQAKVAGINKSLSPH 244

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
            +R   AT   + GA    +    G   +   + YT  A R RL   +++
Sbjct: 245 TLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARLQDLHAK 293


>gi|330895934|gb|EGH28218.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           japonica str. M301072PT]
          Length = 298

 Score =  164 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 55/288 (19%), Positives = 109/288 (37%), Gaps = 26/288 (9%)

Query: 74  LISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESR 126
           LI  +   A W    L+ N+R S+ S          + +   I+          +     
Sbjct: 8   LIDRFL-DALWLEKGLSDNTRDSYRSDLALFNGWLQERNVDLISAGREVILDHLAWRVEN 66

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185
            + P S  +FL+ +R  +++ +R++ ++++P L ++ P+      +  ++ D++   +  
Sbjct: 67  AYKPRSTARFLSGVRGFYRYLLREKLISVDPTLQIDMPQLGKPLPKSLSEADVEALLAAP 126

Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDG- 240
                 G + R   E L   GLR ++     ++ +      ++    G+    V + +  
Sbjct: 127 DLSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERLVPMGEES 186

Query: 241 -------FMKLLAMTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289
                            GK +   F +    +M    F    K +AT AG+ KS   H +
Sbjct: 187 IVWVERYLRGARDELLGGKPSDVLFPSTRGDQMTRQTFWHRIKHQATVAGIGKSLSPHTL 246

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
           R   AT   + GA    +    G   +   + YT  A R RL   ++R
Sbjct: 247 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARLQELHAR 293


>gi|330985052|gb|EGH83155.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 298

 Score =  164 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 55/289 (19%), Positives = 114/289 (39%), Gaps = 28/289 (9%)

Query: 74  LISEYRKSAHW--GSLAVNSRISFESYFD----QIIRKSGDFDY--RKITTKHIRSGVES 125
           LI  +   A W    L+ N+R S+ S        +  ++ D     R++   H+ +    
Sbjct: 8   LIDRFL-DALWLEKGLSDNTRDSYRSDLALFNGWLQERNVDLPSAGREVILDHL-AWRVE 65

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
             + P S  +FL+  R  +++ +R++ ++++P L ++ P+      +  ++ D++   + 
Sbjct: 66  NAYKPRSTARFLSGARGFYRYLLREKLISVDPTLQIDMPQLGKPLPKSLSEADVEALLAA 125

Query: 186 ----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDG 240
                  G + R   E L   GLR ++     ++ +      ++    G+    V + + 
Sbjct: 126 PDLSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERLVPMGEE 185

Query: 241 FMKLLAMTPIGK----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHG 288
            +  +     G           +  F +    +M    F    K +AT AG+ KS   H 
Sbjct: 186 AIVWVERYLRGARDELLGGKPSDVLFPSTRGDQMTRQTFWHRIKHQATVAGIGKSLSPHT 245

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
           +R   AT   + GA    +    G   +   + YT  A R RL   +++
Sbjct: 246 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARLQELHAK 293


>gi|330872807|gb|EGH06956.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 298

 Score =  163 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 57/289 (19%), Positives = 115/289 (39%), Gaps = 28/289 (9%)

Query: 74  LISEYRKSAHW--GSLAVNSRISFESYFD----QIIRKSGDFDY--RKITTKHIRSGVES 125
           LI  +   A W    L+ N+R S+ S        +  ++ D     R++   H+   V+ 
Sbjct: 8   LIDRFL-DALWLEKGLSDNTRDSYRSDLALFNGWLQERNVDLPSAGREVILDHLAWRVD- 65

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
             + P S  +FL+  R  +++ +R++ +A++P L ++ P+      +  ++ D++   + 
Sbjct: 66  NAYKPRSTARFLSGARGFYRYLLREKLIAVDPTLQIDMPQLGKPLPKSLSEADVEALLAA 125

Query: 186 ----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDG 240
                  G + R   E L   GLR ++     ++ +      ++    G+    V + + 
Sbjct: 126 PDLSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERLVPMGEE 185

Query: 241 FMKLLAMTPIGK----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHG 288
            +  +     G           +  F +    +M    F    K +AT AG+ KS   H 
Sbjct: 186 AIVWVERYMRGARDELLGGKPSDVLFPSTRGDQMTRQTFWHRIKHQATVAGIGKSLSPHT 245

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
           +R   AT   + GA    +    G   +   + YT  A R RL   +++
Sbjct: 246 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARLQEMHAK 293


>gi|313500307|gb|ADR61673.1| XerD [Pseudomonas putida BIRD-1]
          Length = 298

 Score =  163 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 58/289 (20%), Positives = 113/289 (39%), Gaps = 28/289 (9%)

Query: 74  LISEYRKSAHW--GSLAVNSRISFESYFD----QIIRKSGDFDY--RKITTKHIRSGVES 125
           LI ++   A W    L+ N+R+S+ S        +   S       R +   H+   ++ 
Sbjct: 8   LIDQFL-DALWLEKGLSDNTRVSYRSDLALFNGWLQEHSVSLPDAGRDLILDHLAWRLD- 65

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           + + P S  +FL+ +R  F++ +R++ VAI+P L V+ P+      +  ++ D++     
Sbjct: 66  QGYKPRSTARFLSGLRGFFRYLLREKLVAIDPTLQVDMPQLGKPLPKSLSEADVEALLQA 125

Query: 186 WS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDG 240
                  G + R   E L   GLR ++     +  +      ++    G+    V + + 
Sbjct: 126 PDLGEAIGQRDRAMLEVLYACGLRVTELVSLTLDQVNLRQGVLRVMGKGSKERLVPMGEE 185

Query: 241 FMKLLAMTPIGK----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288
            +  L                 +  F +   ++M    F    K  A  AG++K  S H 
Sbjct: 186 AVVWLDRYQRDGRAELLNGRPSDVLFPSQRGEQMTRQTFWHRIKHHARVAGIDKPLSPHT 245

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
           +R   AT   + GA    +    G   +   + YT  A + RL   +++
Sbjct: 246 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-KARLQQLHAQ 293


>gi|299142044|ref|ZP_07035178.1| tyrosine recombinase XerD [Prevotella oris C735]
 gi|298576506|gb|EFI48378.1| tyrosine recombinase XerD [Prevotella oris C735]
          Length = 307

 Score =  163 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 47/277 (16%), Positives = 95/277 (34%), Gaps = 25/277 (9%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVES 125
             ++  Y +      + + N+  ++      +              +    +H  + +  
Sbjct: 9   ANVLKSYLRYLKLERNYSQNTLDAYSHDITWLMDYCKREGLEMTALQLEDLQHFAATLHE 68

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
            +  P S  + L+ +R  +++ +   Y+  +P   +E P          +  ++   +  
Sbjct: 69  FQIGPRSQSRILSGIRSFYRFLLLDGYIETDPTELLESPALGQHLPEVLSTAEVDMLEQS 128

Query: 186 W----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPD 239
                 EG + R   E L   GLR S+     +  L   +    +   K      V +  
Sbjct: 129 IDLSKPEGQRNRAIIEVLFSCGLRVSELVNLKLSQLYLDDGFIRV-LGKGSKERLVPISP 187

Query: 240 GFMK----------LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287
             +K           L + P  ++  F+N     +  T   I  K +A +AG+ K  S H
Sbjct: 188 RAIKELQLWFTDRVHLNIKPGEEDFVFLNRRGHHLTRTMILIMIKRQAEEAGIKKTISPH 247

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            +R   AT     GA    + A  G +++   E YT 
Sbjct: 248 TLRHSFATALLQGGADLRAIQAMLGHESIGTTEIYTH 284


>gi|257487154|ref|ZP_05641195.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|331009225|gb|EGH89281.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 298

 Score =  163 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 55/289 (19%), Positives = 114/289 (39%), Gaps = 28/289 (9%)

Query: 74  LISEYRKSAHW--GSLAVNSRISFESYFD----QIIRKSGDFDY--RKITTKHIRSGVES 125
           LI  +   A W    L+ N+R S+ S        +  ++ D     R++   H+ +    
Sbjct: 8   LIDRFL-DALWLEKGLSDNTRDSYRSDLALFNGWLQERNVDLPSAGREVILDHL-AWRVE 65

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
             + P S  +FL+  R  +++ +R++ ++++P L ++ P+      +  ++ D++   + 
Sbjct: 66  NAYKPRSTARFLSGARGFYRYLLREKLISVDPTLQIDMPQLGKPLPKSLSEADVEALLAA 125

Query: 186 WS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDG 240
                  G + R   E L   GLR ++     ++ +      ++    G+    V + + 
Sbjct: 126 PDLSEAIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERLVPMGEE 185

Query: 241 FMKLLAMTPIGK----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHG 288
            +  +     G           +  F +    +M    F    K +AT AG+ KS   H 
Sbjct: 186 AIVWVERYLRGARDELLGGKPSDVLFPSTRGDQMTRQTFWHRIKHQATVAGIGKSLSPHT 245

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
           +R   AT   + GA    +    G   +   + YT  A R RL   +++
Sbjct: 246 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARLQEMHAK 293


>gi|170723312|ref|YP_001751000.1| site-specific tyrosine recombinase XerD [Pseudomonas putida W619]
 gi|169761315|gb|ACA74631.1| tyrosine recombinase XerD [Pseudomonas putida W619]
          Length = 298

 Score =  163 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 57/289 (19%), Positives = 116/289 (40%), Gaps = 28/289 (9%)

Query: 74  LISEYRKSAHW--GSLAVNSRISFES---YFDQIIRKSG---DFDYRKITTKHIRSGVES 125
           LI ++   A W    L+ N+R+S+ S    F+  ++  G       R++   H+   ++ 
Sbjct: 8   LIDQFL-DALWLEKGLSDNTRVSYRSDLALFNGWLQDHGLALPAAGRELILDHLAWRLD- 65

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           + + P S  +FL+ +R  F++ +R++ +A++P L +E P+      +  ++ D+      
Sbjct: 66  QGYKPRSTARFLSGLRGFFRYLLREKLIAVDPTLQIEMPQLGKPLPKSLSEADVDALLQA 125

Query: 186 WS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDG 240
                  G + R   E L   GLR ++     +  +      ++    G+    V + + 
Sbjct: 126 PDLGEAIGQRDRAMLEVLYACGLRVTELVSLALDQVNLRQGVLRVMGKGSKERLVPMGEE 185

Query: 241 FMKLLAMTPIGK----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288
            +  L                 +  F +   ++M    F    K  A  AG++K  S H 
Sbjct: 186 AVLWLERYLRDGRVELLNGRPSDVLFPSLRGEQMTRQTFWHRIKHHARIAGIDKPLSPHT 245

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
           +R   AT   + GA    +    G   +   + YT  A + RL   +++
Sbjct: 246 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-KARLQQLHAQ 293


>gi|26988201|ref|NP_743626.1| site-specific tyrosine recombinase XerD [Pseudomonas putida KT2440]
 gi|148549459|ref|YP_001269561.1| site-specific tyrosine recombinase XerD [Pseudomonas putida F1]
 gi|34222835|sp|Q88MV0|XERD_PSEPK RecName: Full=Tyrosine recombinase xerD
 gi|24982938|gb|AAN67090.1|AE016337_13 integrase/recombinase XerD [Pseudomonas putida KT2440]
 gi|148513517|gb|ABQ80377.1| tyrosine recombinase XerD subunit [Pseudomonas putida F1]
          Length = 298

 Score =  163 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 58/289 (20%), Positives = 113/289 (39%), Gaps = 28/289 (9%)

Query: 74  LISEYRKSAHW--GSLAVNSRISFESYFD----QIIRKSGDFDY--RKITTKHIRSGVES 125
           LI ++   A W    L+ N+R+S+ S        +   S       R +   H+   ++ 
Sbjct: 8   LIDQFL-DALWLEKGLSDNTRVSYRSDLALFNGWLQEHSVSLPDAGRDLILDHLAWRLD- 65

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           + + P S  +FL+ +R  F++ +R++ VAI+P L V+ P+      +  ++ D++     
Sbjct: 66  QGYKPRSTARFLSGLRGFFRYLLREKLVAIDPTLQVDMPQLGKPLPKSLSEADVEALLQA 125

Query: 186 WS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDG 240
                  G + R   E L   GLR ++     +  +      ++    G+    V + + 
Sbjct: 126 PDLGEAIGQRDRAMLEVLYACGLRVTELVSLTLDQVNLRQGVLRVMGKGSKERLVPMGEE 185

Query: 241 FMKLLAMTPIGK----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288
            +  L                 +  F +   ++M    F    K  A  AG++K  S H 
Sbjct: 186 AVVWLERYQRDGRAELLNGRPSDVLFPSQRGEQMTRQTFWHRIKHHARVAGIDKPLSPHT 245

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
           +R   AT   + GA    +    G   +   + YT  A + RL   +++
Sbjct: 246 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-KARLQQLHAQ 293


>gi|54399934|gb|AAV34206.1| site-specific recombinase [Pseudomonas fluorescens]
          Length = 298

 Score =  163 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 59/290 (20%), Positives = 113/290 (38%), Gaps = 30/290 (10%)

Query: 74  LISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESR 126
           LI ++   A W    L+ N+R ++ S          +     I           +    +
Sbjct: 8   LIDQFL-DALWLEKGLSDNTRDAYRSDLALFNGWLQENHLELINAGRELILDHLAWRLEQ 66

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            + P S  +FL+ +R  +++ +R++ +A++P L VE P+      +  ++ D++   +  
Sbjct: 67  NYKPRSTARFLSGLRGFYRYLLREKLIAVDPTLRVEMPQLGRPLPKSLSEADVEALLAAP 126

Query: 187 S----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---------- 232
                 G + R   E L   GLR ++     ++ +      ++    G+           
Sbjct: 127 DLSEAIGQRDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERLVPMGEEA 186

Query: 233 -ITVE--LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AH 287
            + VE  + D   +LL   P      F +   ++M    F    K +A  AG+NKS   H
Sbjct: 187 IVWVERYVRDARHELLGGRPSDA--LFPSLRGEQMTRQTFWHRIKHQAKVAGINKSLSPH 244

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
            +R   AT   + GA    +    G   +   + YT  A R RL   +++
Sbjct: 245 TLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARLQDLHAK 293


>gi|320323174|gb|EFW79263.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320329555|gb|EFW85544.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 298

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 55/289 (19%), Positives = 114/289 (39%), Gaps = 28/289 (9%)

Query: 74  LISEYRKSAHW--GSLAVNSRISFESYFD----QIIRKSGDFDY--RKITTKHIRSGVES 125
           LI  +   A W    L+ N+R S+ S        +  ++ D     R++   H+ +    
Sbjct: 8   LIDRFL-DALWLEKGLSDNTRDSYRSDLALFNGWLQERNVDLPSAGREVILDHL-AWRVE 65

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
             + P S  +FL+  R  +++ +R++ ++++P L ++ P+      +  ++ D++   + 
Sbjct: 66  NAYKPRSTARFLSGARGFYRYLLREKLISVDPTLQIDMPQLGKPLPKSLSEADVEALLAA 125

Query: 186 ----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDG 240
                  G + R   E L   GLR ++     ++ +      ++    G+    V + + 
Sbjct: 126 PDLSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERLVPMGEE 185

Query: 241 FMKLLAMTPIGK----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHG 288
            +  +     G           +  F +    +M    F    K +AT AG+ KS   H 
Sbjct: 186 AIVWVERYLRGARDELLGGKPSDVLFPSTRGDQMTRQTFWHRIKHQATVAGIGKSLSPHT 245

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
           +R   AT   + GA    +    G   +   + YT  A R RL   +++
Sbjct: 246 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHLA-RARLQELHAK 293


>gi|296133169|ref|YP_003640416.1| tyrosine recombinase XerD [Thermincola sp. JR]
 gi|296031747|gb|ADG82515.1| tyrosine recombinase XerD [Thermincola potens JR]
          Length = 295

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 51/278 (18%), Positives = 113/278 (40%), Gaps = 26/278 (9%)

Query: 72  KWLISE--YRKSAHWGSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSGV--- 123
           K LI E  Y  +     LA N+  S+    ++      K G   +      ++ + +   
Sbjct: 2   KALIEEFIYYLTVE-RGLAENTLESYARDLERYSAFLSKHGITKFEATNKTNVMAYLLHL 60

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ--- 180
           + +    S+  + L S++  +++ +R++++  +P +++E PK + +  R  + E+++   
Sbjct: 61  QKQGKATSTISRHLASLKSFYQYLLREKHIEQDPTVNLESPKLQKKLPRVLSVEEVEILL 120

Query: 181 -QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELP 238
            Q +     GS+ +   E L  +G+R S+     + H+   +  ++   K      + + 
Sbjct: 121 NQPRLNEPAGSRDKAMLELLYATGIRVSELISLDLDHVNLEMGYVRCFGKGSKERIIPIG 180

Query: 239 DGFMKLLA----------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286
               K +           +   G+   F+N+  ++M    F    K  A +AG+ K  + 
Sbjct: 181 SLAKKYVEEYLHRGRVRLIKSKGETALFVNHHGRRMTRQGFWKIIKKYAREAGIKKDITP 240

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           H +R   AT   + GA    +    G   +   + YT 
Sbjct: 241 HTLRHSFATHLLENGADLRSVQEMLGHADITTTQIYTH 278


>gi|312962849|ref|ZP_07777336.1| integrase/recombinase XerD [Pseudomonas fluorescens WH6]
 gi|311282876|gb|EFQ61470.1| integrase/recombinase XerD [Pseudomonas fluorescens WH6]
          Length = 298

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 51/288 (17%), Positives = 107/288 (37%), Gaps = 26/288 (9%)

Query: 74  LISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESR 126
           LI  +   A W    L+ N+R ++ S          +     I           +    +
Sbjct: 8   LIDRFL-DALWLEKGLSDNTRQAYRSDLALFNGWLQEKHLELINAGRELILDHLAWRLEQ 66

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            + P S  +FL+ +R  +++ +R++ + ++P L ++ P+      +  ++ D++   +  
Sbjct: 67  NYKPRSTARFLSGVRGFYRYLLREKLITLDPTLQIDMPQLGRPLPKSLSEADVEALLAAP 126

Query: 187 S----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---------- 232
                 G + R   E L   GLR ++     ++ +      ++    G+           
Sbjct: 127 DLSEAIGQRDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERLVPMGEEA 186

Query: 233 -ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289
            + VE      +   +     +  F +   ++M    F    K +A  AG+ K  S H +
Sbjct: 187 IVWVERYMREARSELLGGRPSDVLFPSLRGEQMTRQTFWHRIKHQAKVAGIGKTLSPHTL 246

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
           R   AT   + GA    +    G   +   + YT  A R RL   +++
Sbjct: 247 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARLQDMHAK 293


>gi|330950740|gb|EGH51000.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae Cit
           7]
          Length = 298

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 54/288 (18%), Positives = 109/288 (37%), Gaps = 26/288 (9%)

Query: 74  LISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESR 126
           LI  +   A W    L+ N+R S+ S          + +   I+          +     
Sbjct: 8   LIDRFL-DALWLEKGLSDNTRDSYRSDLALFNGWLQERNVDLISAGREVILDHLAWRVEN 66

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185
            + P S  +FL+  R  +++ +R++ ++++P L ++ P+      +  ++ D++   +  
Sbjct: 67  AYKPRSTARFLSGARGFYRYLLREKLISVDPTLQIDMPQLGKPLPKSLSEADVEALLAAP 126

Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDG- 240
                 G + R   E L   GLR ++     ++ +      ++    G+    V + +  
Sbjct: 127 DLSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERLVPMGEES 186

Query: 241 -------FMKLLAMTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289
                            GK +   F ++   +M    F    K +AT AG+ KS   H +
Sbjct: 187 IVWVERYLRGARDELLGGKPSDVLFPSSRGDQMTRQTFWHRIKHQATVAGIGKSLSPHTL 246

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
           R   AT   + GA    +    G   +   + YT  A R RL   +++
Sbjct: 247 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARLQELHAK 293


>gi|330975463|gb|EGH75529.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           aptata str. DSM 50252]
          Length = 298

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 54/288 (18%), Positives = 108/288 (37%), Gaps = 26/288 (9%)

Query: 74  LISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESR 126
           LI  +   A W    L+ N+R S+ S          + +   I+          +     
Sbjct: 8   LIDRFL-DALWLEKGLSDNTRDSYRSDLALFNGWLQERNVDLISAGREVILDHLAWRVEN 66

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185
            + P S  +FL+  R  +++ +R++ ++++P L ++ P+      +  ++ D++   +  
Sbjct: 67  AYKPRSTARFLSGARGFYRYLLREKLISVDPTLQIDMPQLGKPLPKSLSEADVEALLAAP 126

Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDG- 240
                 G + R   E L   GLR ++     ++ +      ++    G+    V + +  
Sbjct: 127 DLSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERLVPMGEES 186

Query: 241 -------FMKLLAMTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289
                            GK +   F +    +M    F    K +AT AG+ KS   H +
Sbjct: 187 IVWVERYLRGARDELLGGKPSDVLFPSTRGDQMTRQTFWHRIKHQATVAGIGKSLSPHTL 246

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
           R   AT   + GA    +    G   +   + YT  A R RL   +++
Sbjct: 247 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARLQELHAK 293


>gi|330894535|gb|EGH27196.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           mori str. 301020]
          Length = 298

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 55/289 (19%), Positives = 113/289 (39%), Gaps = 28/289 (9%)

Query: 74  LISEYRKSAHW--GSLAVNSRISFESYFD----QIIRKSGDFDY--RKITTKHIRSGVES 125
           LI  +   A W    L+ N+R S+ S        +  ++ D     R++   H+ +    
Sbjct: 8   LIDRFL-DALWLEKGLSDNTRESYRSDLALFNGWLQERNVDLPSAGREVILDHL-AWRVE 65

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
             + P S  +FL+  R  +++ +R++ + ++P L ++ P+      +  ++ D++   + 
Sbjct: 66  NAYKPRSTARFLSGARGFYRYLLREKLITLDPTLQIDMPQLGKPLPKSLSEADVEALLAA 125

Query: 186 ----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDG 240
                  G + R   E L   GLR ++     ++ +      ++    G+    V + + 
Sbjct: 126 PDLSEPTGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERLVPMGEE 185

Query: 241 FMKLLAMTPIGK----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHG 288
            +  +     G           +  F +    +M    F    K +AT AG+ KS   H 
Sbjct: 186 AIVWVERYLRGARDELLGGKPSDVLFPSTRGDQMTRQTFWHRIKHQATVAGIGKSLSPHT 245

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
           +R   AT   + GA    +    G   +   + YT  A R RL   +++
Sbjct: 246 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARLQEMHAK 293


>gi|227889862|ref|ZP_04007667.1| integrase-recombinase [Lactobacillus johnsonii ATCC 33200]
 gi|227849726|gb|EEJ59812.1| integrase-recombinase [Lactobacillus johnsonii ATCC 33200]
          Length = 296

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 46/284 (16%), Positives = 107/284 (37%), Gaps = 25/284 (8%)

Query: 75  ISEYRK-SAHWGSLAVNSRISFESYFDQIIRKSGDFD-----YRKITTKHIRSGVESRKH 128
           + +Y + S     L+ N+ +S+ +  ++ +    D +        +      +  + +  
Sbjct: 5   LEDYLRFSQVERGLSPNTIVSYRTDLEEYLSYLEDQNETSWEVDYLVVDSFLATQKDKGK 64

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF--- 185
             +S  + ++S+R  ++W +RQ+ +  +P + ++ PK +       ++E++ +       
Sbjct: 65  ATTSISRMISSLRKFYQWLLRQDIIERDPLVKIDSPKSERRLPTALSEEEVTKLLDAPDT 124

Query: 186 -WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMK 243
             S G + R   E L  +G+R S+        + + +  I+   K      V + +  + 
Sbjct: 125 NTSLGIRDRAMLEVLYATGMRVSELINLRTGDIHSELKIIRVLGKGSKERLVPITEVALS 184

Query: 244 LL----------AMTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289
            L           +   G+ T   F+NN   ++         K      G+ K  + H +
Sbjct: 185 WLEKYQKDVRENQVLKSGQFTDVIFLNNHGHQLTRQAVWQKIKKYCQLIGITKNVTPHTL 244

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           R   AT   + GA    +    G   +   + YT    +  L +
Sbjct: 245 RHTFATHLLENGADLRVVQEILGHSDITTTQIYTNLTQKHILEV 288


>gi|229592394|ref|YP_002874513.1| site-specific tyrosine recombinase XerD [Pseudomonas fluorescens
           SBW25]
 gi|229364260|emb|CAY51975.1| integrase/recombinase [Pseudomonas fluorescens SBW25]
          Length = 298

 Score =  162 bits (411), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 58/290 (20%), Positives = 112/290 (38%), Gaps = 30/290 (10%)

Query: 74  LISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESR 126
           LI  +   A W    L+ N+R ++ S          + +   I           +    +
Sbjct: 8   LIDRFL-DALWLEKGLSDNTRQAYRSDLALFNGWLQEKNLELINAGRELILDHLAWRLEQ 66

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            + P S  +FL+ +R  +++ +R++ +A++P L VE P+      +  ++ D+    +  
Sbjct: 67  NYKPRSTARFLSGVRGFYRYLLREKLIALDPTLQVEMPQLGRPLPKSLSEADVDALLAAP 126

Query: 187 S----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---------- 232
                 G + R   E L   GLR ++     ++ +      ++    G+           
Sbjct: 127 DLSEAIGQRDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERLVPMGEEA 186

Query: 233 -ITVE--LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287
            + VE  + D   +LL   P   +  F +   ++M    F    K +A  AG+ K  S H
Sbjct: 187 IVWVERYMRDARGELLGGRPS--DVLFPSLRGEQMTRQTFWHRIKHQAKVAGIGKALSPH 244

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
            +R   AT   + GA    +    G   +   + YT  A R RL   +++
Sbjct: 245 TLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARLQDMHAK 293


>gi|330969023|gb|EGH69089.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           aceris str. M302273PT]
          Length = 298

 Score =  162 bits (411), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 56/288 (19%), Positives = 108/288 (37%), Gaps = 26/288 (9%)

Query: 74  LISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESR 126
           LI  +   A W    L+ N+R S+ S          + +   I+          +     
Sbjct: 8   LIDRFL-DALWLEKGLSDNTRDSYRSDLALFNGWLQERNVDLISAGREVILDHLAWRVEN 66

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185
            + P S  +FL+  R  +++ +R++ +A++P L ++ P+      +  ++ D++   +  
Sbjct: 67  AYKPRSTARFLSGARGFYRYLLREKLIAVDPTLQIDMPQLGKPLPKSLSEADVEALLAAP 126

Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDG- 240
                 G + R   E L   GLR ++     ++ +      ++    G+    V + +  
Sbjct: 127 DLSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERLVPMGEES 186

Query: 241 -------FMKLLAMTPIGK--ETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289
                            GK  +  F +    +M    F    K +AT AG+ KS   H +
Sbjct: 187 IVWVERYLRGARDELLGGKPSDVLFPSTRGDQMTRQTFWHRIKHQATVAGIGKSLSPHTL 246

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
           R   AT   + GA    +    G   +   + YT  A R RL   ++R
Sbjct: 247 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARLQEMHAR 293


>gi|268319602|ref|YP_003293258.1| tyrosine recombinase xerD [Lactobacillus johnsonii FI9785]
 gi|262397977|emb|CAX66991.1| tyrosine recombinase xerD [Lactobacillus johnsonii FI9785]
          Length = 302

 Score =  162 bits (411), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 48/288 (16%), Positives = 110/288 (38%), Gaps = 27/288 (9%)

Query: 75  ISEYRK-SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK------ITTKHIRSGVESRK 127
           + +Y + S     L+ N+ +S+ +  ++ +    D + +       +    + +  +  K
Sbjct: 11  LEDYLRFSQVERGLSPNTIVSYRTDLEEYLSYLEDQNEKSWEVDYLVVDAFLATQKDKGK 70

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            T +S  + ++S+R  ++W +RQ+ +  +P + ++ PK +       ++E++ +      
Sbjct: 71  AT-TSISRMISSLRKFYQWLLRQDIIERDPLVKIDSPKSERRLPTALSEEEVTKLLDAPD 129

Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFM 242
                G + R   E L  +G+R S+        + + +  I+   K      V + +  +
Sbjct: 130 TNTRLGIRDRAMLEVLYATGMRVSELINLRTGDIHSELKIIRVLGKGSKERLVPITEVAL 189

Query: 243 KLL----------AMTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288
             L           +   G+ T   F+NN   ++         K      G+ K  + H 
Sbjct: 190 SWLEKYQKDVRENQVLKSGQFTDVIFLNNHGHQLTRQAVWQKIKKYCQLIGITKNVTPHT 249

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
           +R   AT   + GA    +    G   +   + YT    +  L + N 
Sbjct: 250 LRHTFATHLLENGADLRVVQEILGHSDITTTQIYTNLTQKHILEVYNQ 297


>gi|27383115|ref|NP_774644.1| site-specific integrase/recombinase [Bradyrhizobium japonicum USDA
           110]
 gi|27356289|dbj|BAC53269.1| blr8004 [Bradyrhizobium japonicum USDA 110]
          Length = 373

 Score =  162 bits (410), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 58/362 (16%), Positives = 111/362 (30%), Gaps = 35/362 (9%)

Query: 12  TKERTRHGKII-YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
            K+R   G    Y + +  G+ ++   P    FI +Y +A  G                T
Sbjct: 11  VKKRLADGSTKTYRYHRATGKLLQ-GEPGSPEFIESYGAAARGQK------RPQTASSDT 63

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE------ 124
              L+ +Y+ S  +  LA  ++  +      +  + G      +    +           
Sbjct: 64  FAALVVKYKASEVFKLLADRTQSEYARLLKAVESEFGTLPSSALNDPDVLGDFLEYQDAV 123

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
           ++      A   L +   +  WA  ++ +  N     +R          W  E +  F  
Sbjct: 124 AKASGAREADNRLAATSAMLTWAKDRKNIRFNHLRGFKRLHYADRSEILWLPEHVLAFMD 183

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK------TGTIITVELP 238
                 QP  A     ++ LR SD         ++    ++  K       G ++ +   
Sbjct: 184 KAEPELQP--ALILAAHTALRESDLLGLKWTAYRDGCLVVRISKSRRNRGNGRLVDIPCT 241

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK----------SAH- 287
               ++L   P   E        ++     FS  +      AG++K          S H 
Sbjct: 242 KSLRQMLDKMPRTSEYILTTRTNRRFKIRYFSRLWHETMVAAGIDKIKLEGVEEPVSLHF 301

Query: 288 -GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR-LGIKNSRRISSVVDS 345
             +R  + T+ ++AG T  E+    G           K   R + L  K   +  S   +
Sbjct: 302 NDLRGTAITLLSEAGCTPQEIATITGHSLKYVNHILEKYLARTKGLARKAIEKFESSPSA 361

Query: 346 DD 347
             
Sbjct: 362 QF 363


>gi|289675164|ref|ZP_06496054.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           syringae FF5]
          Length = 298

 Score =  162 bits (410), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 55/288 (19%), Positives = 108/288 (37%), Gaps = 26/288 (9%)

Query: 74  LISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESR 126
           LI  +   A W    L+ N+R S+ S          + +   I+          +     
Sbjct: 8   LIDRFL-DALWLEKGLSDNTRDSYRSDLALFNGWLQERNVDLISAGREVILDHLAWRVEN 66

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185
            + P S  +FL+  R  +++ +R++ ++++P L ++ P+      +  ++ D++   +  
Sbjct: 67  AYKPRSTARFLSGARGFYRYLLREKLISVDPTLQIDMPQLGKPLPKSLSEADVEALLAAP 126

Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDG- 240
                 G + R   E L   GLR ++     ++ +      ++    G+    V + +  
Sbjct: 127 DLSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERLVPMGEES 186

Query: 241 -------FMKLLAMTPIGK--ETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289
                            GK  +  F +    +M    F    K +AT AG+ KS   H +
Sbjct: 187 IVWVERYLRGARDELLGGKPSDVLFPSTRGDQMTRQTFWHRIKHQATVAGIGKSLSPHTL 246

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
           R   AT   + GA    +    G   +   + YT  A R RL   ++R
Sbjct: 247 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARLQELHAR 293


>gi|70728483|ref|YP_258232.1| site-specific tyrosine recombinase XerD [Pseudomonas fluorescens
           Pf-5]
 gi|68342782|gb|AAY90388.1| tyrosine recombinase XerD [Pseudomonas fluorescens Pf-5]
          Length = 298

 Score =  161 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 59/291 (20%), Positives = 120/291 (41%), Gaps = 32/291 (10%)

Query: 74  LISEYRKSAHW--GSLAVNSRISFES---YFDQIIRKSG---DFDYRKITTKHIRSGVES 125
           LI  +   A W    L+ N+R ++ S    F+  +++ G       R++   H+ +    
Sbjct: 8   LIDRFL-DALWLEKGLSDNTRDAYRSDLALFNGWLQEQGLELPRAGRELILDHL-AWRVE 65

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           + + P S  +FL+ +R  +++ +R++ + I+P L ++ P+      +  ++ D++   + 
Sbjct: 66  QAYKPRSTARFLSGVRGFYRYLLREKLIEIDPTLQIDMPQLGRPLPKSLSEADVEALLAA 125

Query: 186 WS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI--------- 232
                  G + R   E L   GLR ++     ++ +      ++    G+          
Sbjct: 126 PDLSEAIGQRDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERLVPMGEE 185

Query: 233 --ITVE--LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286
             + VE  + D   +LL   P   +  F +   ++M    F    K +A  AG+ K  S 
Sbjct: 186 AIVWVERYMRDARAELLGGRPS--DVLFPSLRGEQMTRQTFWHRIKHQAKVAGIGKALSP 243

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
           H +R   AT   + GA    +    G   +   + YT  A R RL   +++
Sbjct: 244 HTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARLQDLHAK 293


>gi|42519008|ref|NP_964938.1| integrase/recombinase XerD [Lactobacillus johnsonii NCC 533]
 gi|41583295|gb|AAS08904.1| integrase/recombinase XerD [Lactobacillus johnsonii NCC 533]
          Length = 296

 Score =  161 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 48/288 (16%), Positives = 109/288 (37%), Gaps = 27/288 (9%)

Query: 75  ISEYRK-SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK------ITTKHIRSGVESRK 127
           + +Y + S     L+ N+ +S+ +  ++ +    D +         +    + +  +  K
Sbjct: 5   LEDYLRFSQVERGLSPNTIVSYRTDLEEYLSYLEDQNETSWEVDYLVVDAFLATQKDKGK 64

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            T +S  + ++S+R  ++W +RQ+ +  +P + ++ PK +       ++E++ +      
Sbjct: 65  AT-TSISRMISSLRKFYQWLLRQDIIERDPLVKIDSPKSERRLPTALSEEEVTKLLDAPD 123

Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFM 242
                G + R   E L  +G+R S+        + + +  I+   K      V + +  +
Sbjct: 124 TNTRLGIRDRAMLEVLYATGMRVSELINLRTGDIHSELKIIRVLGKGSKERLVPITEVAL 183

Query: 243 KLL----------AMTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288
             L           +   G+ T   F+NN   ++         K      G+ K  + H 
Sbjct: 184 SWLEKYQKDVRENQVLKSGQFTDVIFLNNHGHQLTRQAVWQKIKKYCQLIGITKNVTPHT 243

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
           +R   AT   + GA    +    G   +   + YT    +  L + N 
Sbjct: 244 LRHTFATHLLENGADLRVVQEILGHSDITTTQIYTNLTQKHILEVYNQ 291


>gi|66044534|ref|YP_234375.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           syringae B728a]
 gi|63255241|gb|AAY36337.1| Phage integrase:Phage integrase, N-terminal SAM-like [Pseudomonas
           syringae pv. syringae B728a]
          Length = 298

 Score =  161 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 55/288 (19%), Positives = 108/288 (37%), Gaps = 26/288 (9%)

Query: 74  LISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESR 126
           LI  +   A W    L+ N+R ++ S          + +   I+          +     
Sbjct: 8   LIDRFL-DALWLEKGLSDNTRDAYRSDLALFNGWLQERNVDLISAGREVILDHLAWRVDN 66

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185
            + P S  +FL+  R  +++ +R++ +A++P L ++ P+      +  ++ D++   +  
Sbjct: 67  AYKPRSTARFLSGARGFYRYLLREKLIAVDPTLQIDMPQLGKPLPKSLSEADVEALLAAP 126

Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDG- 240
                 G + R   E L   GLR ++     ++ +      ++    G+    V + +  
Sbjct: 127 DLSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERLVPMGEES 186

Query: 241 -------FMKLLAMTPIGK--ETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289
                            GK  +  F +    +M    F    K +AT AG+ KS   H +
Sbjct: 187 IVWVERYLRGARDELLGGKPSDVLFPSTRGDQMTRQTFWHRIKHQATVAGIGKSLSPHTL 246

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
           R   AT   + GA    +    G   +   + YT  A R RL   ++R
Sbjct: 247 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARLQEMHAR 293


>gi|167032086|ref|YP_001667317.1| site-specific tyrosine recombinase XerD [Pseudomonas putida GB-1]
 gi|166858574|gb|ABY96981.1| tyrosine recombinase XerD [Pseudomonas putida GB-1]
          Length = 298

 Score =  161 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 57/289 (19%), Positives = 114/289 (39%), Gaps = 28/289 (9%)

Query: 74  LISEYRKSAHW--GSLAVNSRISFESYFD----QIIRKSGDFDY--RKITTKHIRSGVES 125
           LI ++   A W    L+ N+R+S+ S        +  ++       R++   H+   ++ 
Sbjct: 8   LIDQFL-DALWLEKGLSDNTRVSYRSDLALFNGWLQEQAVSLPDAGRELILDHLAWRLD- 65

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           + + P S  +FL+ +R  F++ +R+  VAI+P L V+ P+      +  ++ D++     
Sbjct: 66  QGYKPRSTARFLSGLRGFFRYLLRERLVAIDPTLQVDMPQLGKPLPKSLSEADVEALLQA 125

Query: 186 WS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDG 240
                  G + R   E L   GLR ++     +  +      ++    G+    V + + 
Sbjct: 126 PDLGEAIGQRDRAMLEVLYACGLRVTELVSLTLDQVNLRQGVLRVMGKGSKERLVPMGEE 185

Query: 241 FMKLLAMTPIGK----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288
            +  L                 +  F +   ++M    F    K  A  AG++K  S H 
Sbjct: 186 AVVWLERYQRDGRAELLNGRPSDVLFPSLRGEQMTRQTFWHRIKHHARVAGIDKPLSPHT 245

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
           +R   AT   + GA    +    G   +   + YT  A + RL   +++
Sbjct: 246 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-KARLQQLHAQ 293


>gi|299132356|ref|ZP_07025551.1| phage integrase [Afipia sp. 1NLS2]
 gi|298592493|gb|EFI52693.1| phage integrase [Afipia sp. 1NLS2]
          Length = 205

 Score =  161 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 46/174 (26%), Positives = 79/174 (45%), Gaps = 4/174 (2%)

Query: 89  VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAV 148
             +R       D    + G+  Y+ +  KHIR   ++R   P SA  F+ ++R +FK+AV
Sbjct: 31  AGTRYVRRQVLDNFCAEDGEKPYKLLLPKHIRKRRDARADRPESANAFIKALRQVFKYAV 90

Query: 149 RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD 208
             +YV  N   +V   K K +G   W  E++++F+     GS  RLA   ++Y+G R SD
Sbjct: 91  DNDYVVSNLAQAVPYLKAKGDGHHTWMLEEVERFERTHPIGSTARLALALMIYTGQRRSD 150

Query: 209 SCRAGVQHLQNNIFSIKTQKTGTI----ITVELPDGFMKLLAMTPIGKETFFIN 258
           +   G  H ++        K        + V +     +++  T  G +T  +N
Sbjct: 151 AVLLGPNHFKDGWLHFTQFKGRERKPITLDVPILPELQRIIDATACGTDTSLLN 204


>gi|148651956|ref|YP_001279049.1| tyrosine recombinase XerD [Psychrobacter sp. PRwf-1]
 gi|148571040|gb|ABQ93099.1| tyrosine recombinase XerD [Psychrobacter sp. PRwf-1]
          Length = 312

 Score =  161 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 55/298 (18%), Positives = 108/298 (36%), Gaps = 28/298 (9%)

Query: 52  TGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY 111
               P++    +   +P      I+E+R++     L+  +R ++     ++   +     
Sbjct: 5   RAIQPRQPKALAVDDEP----AYITEFRQAMLARGLSTRTRNAYVRDL-KLCETTHSKAL 59

Query: 112 R---KITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168
                +      + ++ +  TP +  + L+S+R  + W V  E    NPC  ++ PK   
Sbjct: 60  TLWSDMDVMQCLTALDRQGKTPRTQARMLSSLRQFYLWMVGNERREDNPCERIKTPKIGR 119

Query: 169 EGIRPWTKEDMQQFKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
              +  ++ D++   S        G + +   E L   GLR S+     ++ +  N   +
Sbjct: 120 SLPKDLSENDVESLLSAPDTSTALGLRDKAMLEVLYACGLRVSELMNLSLEQVNLNAGWL 179

Query: 225 K-TQKTGTIITVELPD------------GFMKLLAMTPIGK-ETFFINNDKQKMNATQFS 270
           + T K      V L +               +L+A    G  +  F+      M    F 
Sbjct: 180 QITGKGNKTRLVPLGEYASDALDDYLTHARGELVAHLKSGNCQAVFLTTQGGYMTRQNFW 239

Query: 271 IWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
              K  A +AG+  + S H +R   AT   + GA    +    G   +   + YT  A
Sbjct: 240 YMIKKYAKQAGIQSDLSPHTLRHAFATHLLNHGADLRSVQLLLGHSDLSTTQIYTHVA 297


>gi|281424791|ref|ZP_06255704.1| tyrosine recombinase XerD [Prevotella oris F0302]
 gi|281401161|gb|EFB31992.1| tyrosine recombinase XerD [Prevotella oris F0302]
          Length = 307

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 46/277 (16%), Positives = 94/277 (33%), Gaps = 25/277 (9%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVES 125
             ++  Y +      + + N+  ++      +              +    +H  + +  
Sbjct: 9   ANVLKSYLRYLKLERNYSQNTLDAYSHDITWLMDYCKREGLEVTALQLEDLQHFAATLHE 68

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
            +  P S  + L+ +R  +++ +   Y+  +P   +E P          +  ++   +  
Sbjct: 69  FQIGPRSQSRILSGIRSFYRFLLLDGYIETDPTELLESPALGQHLPEVLSTAEVDMLEQS 128

Query: 186 WS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPD 239
                 EG +     E L   GLR S+     +  L   +    +   K      V +  
Sbjct: 129 IDLSKLEGQRNLAIIEVLFSCGLRVSELVNLKLSQLYLDDGFIRV-LGKGSKERLVPISP 187

Query: 240 GFMK----------LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287
             +K           L + P  ++  F+N     +  T   I  K +A +AG+ K  S H
Sbjct: 188 RAIKELQLWFTDRVHLNIKPGEEDFVFLNRRGHHLTRTMILIMIKRQAEEAGIKKTISPH 247

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            +R   AT     GA    + A  G +++   E YT 
Sbjct: 248 TLRHSFATALLQGGADLRAIQAMLGHESIGTTEIYTH 284


>gi|329667457|gb|AEB93405.1| integrase/recombinase XerD [Lactobacillus johnsonii DPC 6026]
          Length = 296

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 48/288 (16%), Positives = 109/288 (37%), Gaps = 27/288 (9%)

Query: 75  ISEYRK-SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK------ITTKHIRSGVESRK 127
           + +Y + S     L+ N+ +S+ +  ++ +    D +         +    + +  +  K
Sbjct: 5   LEDYLRFSQVERGLSPNTIVSYRTDLEEYLSYLEDQNETSWEVDYLVVDAFLATQKDKGK 64

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            T +S  + ++S+R  ++W +RQ+ +  +P + ++ PK +       ++E++ +      
Sbjct: 65  AT-TSISRMISSLRKFYQWLLRQDIIERDPLVKIDSPKSERRLPTALSEEEVTKLLDAPD 123

Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFM 242
                G + R   E L  +G+R S+        + + +  I+   K      V + +  +
Sbjct: 124 TNTRLGIRDRAMLEVLYATGMRVSELINLRTGDIHSELKIIRVLGKGSKERLVPVTEVAL 183

Query: 243 KLL----------AMTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288
             L           +   G+ T   F+NN   ++         K      G+ K  + H 
Sbjct: 184 SWLEKYQKDVRENQVLKSGQFTDVIFLNNHGHQLTRQAVWQKIKKYCQLIGITKNVTPHT 243

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
           +R   AT   + GA    +    G   +   + YT    +  L + N 
Sbjct: 244 LRHTFATHLLENGADLRVVQEILGHSDITTTQIYTNLTQKHILEVYNQ 291


>gi|192360546|ref|YP_001981926.1| tyrosine recombinase XerD [Cellvibrio japonicus Ueda107]
 gi|190686711|gb|ACE84389.1| tyrosine recombinase XerD [Cellvibrio japonicus Ueda107]
          Length = 299

 Score =  160 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 52/276 (18%), Positives = 98/276 (35%), Gaps = 24/276 (8%)

Query: 85  GSLAVNSRISFESYFDQIIR--KSGDFD----YRKITTKHIRSGVESRKHTPSSAIQFLT 138
             L+ N++ S+    +Q      +G             +   +    +  +  S  +FL+
Sbjct: 20  KGLSENTQESYRRDLEQFAGWLAAGQGPDLLAVTATEVQAYLAWRHQQHLSSRSTARFLS 79

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194
            +R  ++  +R+ ++  NP   VE PK      +  ++ D++   S        G + + 
Sbjct: 80  CLRGFYRLQIREGHLHDNPLALVENPKLSRSLPKSLSESDVENLLSAPDVDDPVGLRDKT 139

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDGFMKLLAMTPIGKE 253
             E L   GLR S+     +  +      ++    G+    V + +     L        
Sbjct: 140 MLEVLYACGLRVSELVGLTMSQVNLRQNVVRVMGKGSKERLVPMGEEAAAWLQRYLREAR 199

Query: 254 TFFINN----------DKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301
              +NN            Q M    F    K  A  AG+NK  S H +R   AT   + G
Sbjct: 200 PVLLNNFPDEVVFPSSRGQPMTRQTFWYRIKHWAQVAGINKPLSPHTLRHAFATHLLNHG 259

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
           A    +    G   +   + YT  A R+R+  +++ 
Sbjct: 260 ADLRVVQLLLGHSDLSTTQIYTHVA-RLRMKHQHAE 294


>gi|104783227|ref|YP_609725.1| site-specific tyrosine recombinase XerD [Pseudomonas entomophila
           L48]
 gi|95112214|emb|CAK16941.1| site-specific tyrosine recombinase, integrase family [Pseudomonas
           entomophila L48]
          Length = 298

 Score =  160 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 60/291 (20%), Positives = 118/291 (40%), Gaps = 32/291 (10%)

Query: 74  LISEYRKSAHW--GSLAVNSRISFES---YFDQIIRKSGDFDY---RKITTKHIRSGVES 125
           LI ++   A W    L+ N+R S+ S    F+  +++ G       R++   H+    + 
Sbjct: 8   LIDQFL-DALWLEKGLSDNTRTSYRSDLALFNGWLQEQGVALPDAGRELILDHLAWRFD- 65

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           + + P S  +FL+ +R  +++ +R+  +A++P L V+ P+      +  ++ D++     
Sbjct: 66  QAYKPRSTARFLSGVRGFYRYLLRERMIAVDPTLQVDMPQLGRPLPKSLSEADVEALLKA 125

Query: 186 WS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV------ 235
                  G + R   E L   GLR ++     +  +      ++    G+   +      
Sbjct: 126 PDLGEAIGQRDRAMLEVLYACGLRVTELVSLTLDQVNLRQGVLRVMGKGSKERLVPMGEE 185

Query: 236 -------ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286
                   L DG  +LL   P   +  F +   ++M    F    K  A  AG++K  S 
Sbjct: 186 AVLWLERYLRDGRAELLNGRPS--DVLFPSLRGEQMTRQTFWHRIKHHARVAGIDKPLSP 243

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
           H +R   AT   + GA    +    G   +   + YT  A + RL   +++
Sbjct: 244 HTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-KARLQQLHAQ 293


>gi|149914829|ref|ZP_01903359.1| Integrase [Roseobacter sp. AzwK-3b]
 gi|149811622|gb|EDM71457.1| Integrase [Roseobacter sp. AzwK-3b]
          Length = 308

 Score =  160 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 60/282 (21%), Positives = 105/282 (37%), Gaps = 14/282 (4%)

Query: 70  TLKWLISEYRKSAHWGSL--AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES-R 126
           T+  LI  +  S        +  ++  +  Y     +  GD   R++  +H+ + +    
Sbjct: 15  TIGALIDAFEVSWATRQRKISKGTQEHYRRYLKPARKAWGDLPARELRPRHVDALIRKIG 74

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
              P +A   L +++ +  WA    E +  +P   VER   K EG RPWT + +  F   
Sbjct: 75  ADKPGAANNILDALKAMVSWANGPVELLTHDPTQGVERF-SKGEGHRPWTSQQL-AFAEQ 132

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
              G+  R  F    Y+G R SD  R     + +  FS+  +KTG      +       +
Sbjct: 133 VFTGT-IRRFFFLSRYTGQRISDVVRLSPNDVDDGGFSLPQKKTGVKPWCPIFPELEAEM 191

Query: 246 AMTPIGKETFFINND----KQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISAD 299
                    + + +      +  +  Q    F  +  K  V      HG+R  +      
Sbjct: 192 VTWERRPGPYLLQSSGKSAGKPFSTNQMWKAFDRERKKYSVLSGAVPHGLRANAVIRLRG 251

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
            G TA ++    G  +V+  E+Y++ ADR   G    R    
Sbjct: 252 EGYTALQISDMVG-MSVEMVESYSRHADRKASGQAVLREFQE 292


>gi|116513910|ref|YP_812816.1| integrase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
 gi|116093225|gb|ABJ58378.1| tyrosine recombinase XerD subunit [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|325125576|gb|ADY84906.1| Integrase-recombinase [Lactobacillus delbrueckii subsp. bulgaricus
           2038]
          Length = 298

 Score =  160 bits (404), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 46/283 (16%), Positives = 107/283 (37%), Gaps = 24/283 (8%)

Query: 75  ISEYRK-SAHWGSLAVNSRISFESYFDQII-----RKSGDFDYRKITTKHIRSGVESRKH 128
           I++Y + S     L+ N+  +++    + +      +   +    +      +       
Sbjct: 8   INDYLRYSQIERGLSPNTIAAYQQDLLEFLAFVKEEQMPAWPLEAVEIDAFLAKERDLGK 67

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKS 184
             SS  + ++++   ++W VRQ+ +A++P   ++ PKR+       T+ ++    +Q   
Sbjct: 68  ANSSISRLVSTLSRFYQWLVRQQLIALDPMSQIDAPKREKRMPLALTEAEVGKLLEQPDL 127

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMK 243
               G + R+  E L  +G+R S++    +  +  N+  IK   K      + +    + 
Sbjct: 128 TTDLGIRDRVLLELLYATGMRVSEAVNLQLADVHANLQLIKVLGKGSKERLIPVSALALD 187

Query: 244 LLAM-TPIGK----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290
            +    P+            +  F+N+   ++         K    +AG+ K  + H +R
Sbjct: 188 WIKRYLPVRDQQLLKRGKSSDYLFLNSRGGQLTRQAVWQKIKKYCQQAGIAKDVTPHTLR 247

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
              AT   + GA    +    G   +   + YT    +  L +
Sbjct: 248 HSFATHLLEHGADLRVVQEILGHTDISTTQIYTNLTQKHILDV 290


>gi|119775871|ref|YP_928611.1| integrase/recombinase XerD [Shewanella amazonensis SB2B]
 gi|119768371|gb|ABM00942.1| integrase/recombinase XerD [Shewanella amazonensis SB2B]
          Length = 321

 Score =  159 bits (403), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 56/307 (18%), Positives = 106/307 (34%), Gaps = 24/307 (7%)

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKSA-HWGSLAVNSRISFESYFDQI-----IRKSG 107
              + E   +P K       LI  +         L+ N+  ++ +   Q       +  G
Sbjct: 11  GGKRPEKSGAPLKPSAAGMALIDAFLDELWSLQGLSDNTLSAYRTDLCQFDAFLTAKGIG 70

Query: 108 DFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167
                 +T +   +    +    +S  + L+S+R  ++  +    ++ +P   +E PK  
Sbjct: 71  LLALDSLTLRDYLAYRFEQGMAKTSTARMLSSLRRFYRHQLVSGTLSEDPTALIESPKLP 130

Query: 168 TEGIRPWTKEDMQQFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223
                  ++  ++Q  +          + +   E L  +GLR S+    G+  L      
Sbjct: 131 KSLPGSLSEAQVEQLLAEPSSDDPVECRDKAMLELLYATGLRVSELVGLGMSELGLRQGL 190

Query: 224 IKT-QKTGTIITVELPDGFMKLLA---MTPIG-------KETFFINNDKQKMNATQFSIW 272
           ++   K G    V + +     L      P          E  F +N  Q+M    F   
Sbjct: 191 VRIIGKGGKERLVPMGEVAQDALEQFLAGPRQMLLKQGATEVVFPSNRGQQMTRQTFWHR 250

Query: 273 FKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
            K  A +AG+    S H +R   AT   + GA    +    G  ++   + YT  A R R
Sbjct: 251 IKLYALRAGISTELSPHTLRHAFATHLLNHGADLRVVQLLLGHSSLSTTQIYTHVA-RTR 309

Query: 331 LGIKNSR 337
           L   + +
Sbjct: 310 LADLHEK 316


>gi|104773902|ref|YP_618882.1| site-specific recombinase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|103422983|emb|CAI97665.1| Site-specific recombinase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
          Length = 298

 Score =  159 bits (403), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 46/283 (16%), Positives = 106/283 (37%), Gaps = 24/283 (8%)

Query: 75  ISEYRK-SAHWGSLAVNSRISFESYFDQII-----RKSGDFDYRKITTKHIRSGVESRKH 128
           I++Y + S     L+ N+  +++    + +      +   +    +      +       
Sbjct: 8   INDYLRYSQIERGLSPNTIAAYQQDLLEFLAFVKEEQMPAWPLEAVEIDAFLAKERDLGK 67

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKS 184
             SS  + ++++   ++W VRQ+ +A++P   ++ PKR+       T+ ++    +Q   
Sbjct: 68  ANSSISRLVSTLSRFYQWLVRQQLIALDPMSQIDAPKREKRMPLALTEAEVGKLLEQPDL 127

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMK 243
               G + R   E L  +G+R S++    +  +  N+  IK   K      + +    + 
Sbjct: 128 TTDLGIRDRALLELLYATGMRVSEAVNLQLADVHANLQLIKVLGKGSKERLIPVSALALD 187

Query: 244 LLAM-TPIGK----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290
            +    P+            +  F+N+   ++         K    +AG+ K  + H +R
Sbjct: 188 WIKRYLPVRDQQLLKRGKSSDYLFLNSRGGQLTRQAVWQKIKKYCQQAGIAKDVTPHTLR 247

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
              AT   + GA    +    G   +   + YT    +  L +
Sbjct: 248 HSFATHLLEHGADLRVVQEILGHTDISTTQIYTNLTQKHILDV 290


>gi|303236823|ref|ZP_07323402.1| tyrosine recombinase XerD [Prevotella disiens FB035-09AN]
 gi|302482991|gb|EFL46007.1| tyrosine recombinase XerD [Prevotella disiens FB035-09AN]
          Length = 318

 Score =  159 bits (403), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 51/290 (17%), Positives = 111/290 (38%), Gaps = 23/290 (7%)

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQII-----RKSGDFDY 111
           ++Y         +   ++ +Y++      + + N+  ++    ++++      K    + 
Sbjct: 5   QKYAKKMESNKDSSSNVLRKYQRYLKLEKAYSANTLDAYMRDVEKLLKYLANEKINPEEA 64

Query: 112 RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
           +    ++  + V        S  + L+ +R  F++ V + Y+  +P   +E PK+     
Sbjct: 65  KLENIENFAAAVGDLGIGARSLARILSGVRQFFRYLVLEGYIEADPTELLESPKQPQHLP 124

Query: 172 RPWTKEDMQQFKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227
              + E++   ++       EG + +   E L   GLR S+     + +L  +   ++  
Sbjct: 125 EVLSTEEVDSLENAIDLSKWEGHRNKAIIEVLFSCGLRVSELTNLKLSNLYADEQFVRVM 184

Query: 228 KTGT-IITVELPDGFMKLLAMTPIGK----------ETFFINNDKQKMNATQFSIWFKAK 276
             G+    V +    +K L    I +          +  F+N     +  T   I  K  
Sbjct: 185 GKGSKERLVPISPRALKELNFWFIDRNQMKIKEGEEDFVFLNRRGAHLTRTMILIMIKKY 244

Query: 277 ATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           A +AG+ K  S H +R   AT   + GA    + A  G +++   E YT 
Sbjct: 245 AQEAGIKKTISPHTLRHSFATALLEGGADLRAIQAMLGHESIGTTEIYTH 294


>gi|317504379|ref|ZP_07962363.1| integrase/recombinase XerD [Prevotella salivae DSM 15606]
 gi|315664501|gb|EFV04184.1| integrase/recombinase XerD [Prevotella salivae DSM 15606]
          Length = 307

 Score =  159 bits (402), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 52/277 (18%), Positives = 100/277 (36%), Gaps = 25/277 (9%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIR--KSGDFDYRKITT---KHIRSGVES 125
             ++  Y +      + + N+  ++      +I   K  + D   +     +H  + +  
Sbjct: 9   ANILKAYLRYLKLERNYSPNTLDAYSHDIAWLIDYCKREERDLLGLQLEDLQHFAASLHE 68

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
               P S  + L+ +R  F++ +   Y+  +P   +E P          + E++ + +  
Sbjct: 69  FHIGPRSQSRILSGIRSFFRFLLLDGYIDNDPTELLESPVLGQHLPEVLSTEEVDRLEES 128

Query: 186 W----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPD 239
                 EG + R   E L   GLR S+     +   +L +    +   K      V +  
Sbjct: 129 IDLSKPEGQRNRTIIEVLFSCGLRVSELVHLKLSELYLDDGFIRV-LGKGSKERLVPISP 187

Query: 240 GFMK----------LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287
             +K           L + P  ++  F+N     +  T   I  K +A +AG+ K  S H
Sbjct: 188 RAIKELRLWFADRVHLDIKPGEEDFVFLNRRGHHLTRTMILIMIKRQAEEAGIKKTISPH 247

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            +R   AT     GA    + A  G + +   E YT 
Sbjct: 248 TLRHSFATALLQGGADLRAIQAMLGHEHIGTTEIYTH 284


>gi|119470495|ref|ZP_01613198.1| site-specific tyrosine recombinase XerD [Alteromonadales bacterium
           TW-7]
 gi|119446196|gb|EAW27473.1| site-specific tyrosine recombinase XerD [Alteromonadales bacterium
           TW-7]
          Length = 308

 Score =  159 bits (402), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 46/271 (16%), Positives = 95/271 (35%), Gaps = 19/271 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFLTSMR 141
             ++ N+  ++ S  D+  +     +   +T   I S +  R      P S  + +++++
Sbjct: 33  QGVSENTLSAYRSDLDKFCQFLKGENLMTVTGHDIESYLAHRVDLGLKPRSTARSISALK 92

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFE 197
             +++ VR++ +   P L++ +PK      +  ++ +++   +        G + +   E
Sbjct: 93  RFYQYFVREKMITDTPMLNIAQPKAGQSLPKTLSETEVEALLNAPNTEEPMGLRDKAMLE 152

Query: 198 FLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLL---------AM 247
            L  +GLR S+     ++ +           K      V L +  M  L          M
Sbjct: 153 LLYATGLRVSELVGLRMEQINLRQAVVFVKGKGNKERLVPLGEEAMHWLELFLKVGRAQM 212

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAH 305
                +  F +     M    F    K  A  A V    S H +R   AT   + GA   
Sbjct: 213 IKHATDFVFPSKRGVGMTRQTFWHRIKHYAILASVESPLSPHTLRHAFATHLLNHGADLR 272

Query: 306 ELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
            +    G   +   + YT  A+     +   
Sbjct: 273 VVQMMLGHSDLSTTQIYTHVANERLKSVHAQ 303


>gi|327312733|ref|YP_004328170.1| putative tyrosine recombinase XerD [Prevotella denticola F0289]
 gi|326945335|gb|AEA21220.1| putative tyrosine recombinase XerD [Prevotella denticola F0289]
          Length = 315

 Score =  159 bits (401), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 51/276 (18%), Positives = 100/276 (36%), Gaps = 23/276 (8%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQII-----RKSGDFDYRKITTKHIRSGVES 125
           K ++  +R+        + N+  ++    D+++      +    D      +H  + V  
Sbjct: 8   KDIVGRFRRYLKLEKGCSPNTLDAYLHDVDKLLRYLAGEQVSVTDVTLEQLEHFAASVSD 67

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
                 S  + L+S+R  +++ V   Y+  +P   +E PK+        +  ++   +  
Sbjct: 68  LGIGARSLARILSSVRQFYRFLVLDGYMEADPTELLESPKQPDHLPEVLSTAEVDLLEQA 127

Query: 186 WS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDG 240
                 EG + R   E L   GLR S+     +  L  +   ++    G+    V +   
Sbjct: 128 VDLTKWEGHRNRAIIEVLFSCGLRVSELTHLKLSDLYRDEQFVRVMGKGSKERLVPISPR 187

Query: 241 FMKLLAMTPIGK----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288
            +  L      +          +  F+N     +  T   I  K  A +AG+ K  S H 
Sbjct: 188 ALDELDCWFADRNVMKIKSGEEDYVFLNRRGHHLTRTMILIMIKRYAVEAGIRKTISPHT 247

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +R   AT   + GA    + A  G +++   E YT 
Sbjct: 248 LRHSFATSLLEGGADLRAIQAMLGHESIGTTEIYTH 283


>gi|77919114|ref|YP_356929.1| site-specific recombinase [Pelobacter carbinolicus DSM 2380]
 gi|77545197|gb|ABA88759.1| tyrosine recombinase XerD subunit [Pelobacter carbinolicus DSM
           2380]
          Length = 295

 Score =  159 bits (401), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 51/276 (18%), Positives = 100/276 (36%), Gaps = 24/276 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTK------HIRSGVESRKHTPSSAIQFLT 138
             L+ N+  ++     + +          +            S ++ R  +  S  + L 
Sbjct: 16  KGLSANTLDAYGRDLARYLEFLSVKGVTGLEQVSPPMVVAFLSALKERGLSARSRARKLV 75

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRL 194
           S+R+  ++ + +     NP   V  PK   +  +  T ++++   S     +    + + 
Sbjct: 76  SLRMFHRFLLAENLATTNPAAQVAAPKSFAKLPQILTPDEVESLLSAPGNTTCFDLRDKA 135

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLA------- 246
             E L  +GLR S+     +Q LQ ++  +    K      V L D   + +        
Sbjct: 136 MLEILYATGLRVSELVGLTLQDLQLDVGYLTAFGKRAKQRIVPLGDAAREAVLEYLSHGR 195

Query: 247 ---MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301
                 +G    F+N     +    F    K +A +AG+NK  + H +R   AT   D G
Sbjct: 196 GELAGEVGSGFLFLNRSGNGLTRQGFWKMMKRRAMEAGINKNITPHTLRHSFATHLLDNG 255

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
           A    + A  G   +   + YT    R R+ + + +
Sbjct: 256 ADLRAVQAMLGHADISTTQIYTH-VTRERMKVIHQQ 290


>gi|325268524|ref|ZP_08135154.1| integrase/recombinase XerD [Prevotella multiformis DSM 16608]
 gi|324989052|gb|EGC21005.1| integrase/recombinase XerD [Prevotella multiformis DSM 16608]
          Length = 310

 Score =  159 bits (401), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 50/276 (18%), Positives = 101/276 (36%), Gaps = 23/276 (8%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQII-----RKSGDFDYRKITTKHIRSGVES 125
           K ++  +R+        + N+  ++    D+++      +    D      +H  + V  
Sbjct: 8   KDIVGRFRRYLKLEKGCSPNTVDAYLHDVDKLLRYLAGEQVPVTDVTLEQLEHFAASVSD 67

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
                 S  + L+ +R  +++ V   Y+  +P   +E PK+        +  ++   +  
Sbjct: 68  LGIGARSLARILSGVRQFYRFLVLDGYMEADPTELLESPKQPDHLPEVLSTAEVDLLEQA 127

Query: 186 WS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDG 240
                 EG + R   E L   GLR S+     +  L      ++    G+    V +   
Sbjct: 128 VDLTKWEGHRNRAIIEVLFSCGLRVSELTHLKLSDLYREEQYVRVMGKGSKERLVPISPR 187

Query: 241 FMK----------LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288
            +           ++ + P  ++  F+N     +  T   I  K  A +AG+ K  S H 
Sbjct: 188 ALDELDCWFADRNVMKIKPGEEDYVFLNRRGHHLTRTMILIMIKRYAAEAGIRKTISPHT 247

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +R   AT   + GA    + A  G +++   E YT 
Sbjct: 248 LRHSFATSLLEGGADLRAIQAMLGHESIGTTEIYTH 283


>gi|325273831|ref|ZP_08140016.1| site-specific tyrosine recombinase XerD [Pseudomonas sp. TJI-51]
 gi|324101037|gb|EGB98698.1| site-specific tyrosine recombinase XerD [Pseudomonas sp. TJI-51]
          Length = 298

 Score =  159 bits (401), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 56/288 (19%), Positives = 109/288 (37%), Gaps = 26/288 (9%)

Query: 74  LISEYRKSAHW--GSLAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVESR 126
           LI ++   A W    L+ N+R+S+ S           R     D  +       +    +
Sbjct: 8   LIDQFL-DALWLEKGLSDNTRVSYRSDLALFNGWLHERSVALPDAGRDLILDHLAWRLEQ 66

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            + P S  +F++ +R  F++ +R++ VAI+P L V+ P+      +  ++ D++      
Sbjct: 67  GYKPRSTARFISGLRGFFRYLLREKLVAIDPTLQVDMPQLGKPLPKSLSEADVEALLQAP 126

Query: 187 S----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDGF 241
                 G + R   E L   GLR ++     +  +      ++    G+    V + +  
Sbjct: 127 DLGEAIGQRDRAMLEVLYACGLRVTELVSLALDQVNLRQGVLRVMGKGSKERLVPMGEEA 186

Query: 242 MKLLAMTPIGK----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289
           +  L                 +  F +   ++M    F    K  A  AG++K  S H +
Sbjct: 187 VVWLERYLRSGRAELLNGRPSDVLFPSLRGEQMTRQTFWHRIKHHARVAGIDKPLSPHTL 246

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
           R   AT   + GA    +    G   +   + YT  A + RL   +++
Sbjct: 247 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-KARLQQLHAQ 293


>gi|295695953|ref|YP_003589191.1| tyrosine recombinase XerD [Bacillus tusciae DSM 2912]
 gi|295411555|gb|ADG06047.1| tyrosine recombinase XerD [Bacillus tusciae DSM 2912]
          Length = 295

 Score =  159 bits (401), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 46/263 (17%), Positives = 98/263 (37%), Gaps = 23/263 (8%)

Query: 85  GSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSGVE---SRKHTPSSAIQFLT 138
             LA ++  S+ S  +       ++G  D+ +   +HI + +         P++  + + 
Sbjct: 16  KGLAPSTLGSYRSDLEDFSDFLQRTGCGDWPETGRRHIVAYLAHLQKLGRAPATVSRHMA 75

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FWSEGSQPRL 194
           S+R  +++  R+  + ++P   ++ PK      R    E++++  +          + R 
Sbjct: 76  SLRSFYQFLSREGLIEVDPTGQLDSPKADKRLPRVLNVEEVERLLAAPEGLTPMALRDRA 135

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKE 253
             E L  +G+R S+     V  +  N+  +K   K      V L    ++ +        
Sbjct: 136 MLEMLYATGVRVSELVSLNVTDVNLNMGYVKCYGKGSKERIVPLGSAALEAVHAYLTRGR 195

Query: 254 T----------FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301
                       F+N+  +++    F    K  A  AG+ K  + H +R   AT   + G
Sbjct: 196 AGLLKNGDPGALFVNHQGKRLTRQGFWKILKKYAQTAGIQKAITPHTLRHSFATHLLENG 255

Query: 302 ATAHELMATYGWKTVDQAETYTK 324
           A    +    G   +   + YT 
Sbjct: 256 ADLRAVQEMLGHADISTTQIYTH 278


>gi|325860159|ref|ZP_08173284.1| putative tyrosine recombinase XerD [Prevotella denticola CRIS
           18C-A]
 gi|325482246|gb|EGC85254.1| putative tyrosine recombinase XerD [Prevotella denticola CRIS
           18C-A]
          Length = 315

 Score =  159 bits (401), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 50/276 (18%), Positives = 101/276 (36%), Gaps = 23/276 (8%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQII-----RKSGDFDYRKITTKHIRSGVES 125
           K ++  +R+        + N+  ++    D+++      +    D      +H  + V  
Sbjct: 8   KDIVGRFRRYLKLEKGCSPNTLDAYLHDVDKLLRYLAGEQVSVTDVTLEQLEHFAASVSD 67

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
                 S  + L+ +R  +++ V   Y+  +P   +E PK+        +  ++   +  
Sbjct: 68  LGIGARSLARILSGVRQFYRFLVLDGYMEADPTELLESPKQPDHLPEVLSTAEVDLLEQA 127

Query: 186 WS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDG 240
                 EG + R   E L   GLR S+     +  L      ++    G+    V +   
Sbjct: 128 VDLTKWEGHRNRAIIEVLFSCGLRVSELTHLKLSDLYREEQFVRVMGKGSKERLVPISPR 187

Query: 241 FMK----------LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288
            +           ++ + P  ++  F+N     +  T   I  K  A +AG+ K  S H 
Sbjct: 188 ALDELDCWFADRNVMKIKPGEEDYVFLNRRGHHLTRTMILIMIKRYAVEAGIRKTISPHT 247

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +R   AT   + GA    + A  G +++   E YT 
Sbjct: 248 LRHSFATSLLEGGADLRAIQAMLGHESIGTTEIYTH 283


>gi|94986683|ref|YP_594616.1| site-specific recombinase [Lawsonia intracellularis PHE/MN1-00]
 gi|94730932|emb|CAJ54295.1| site-specific recombinase [Lawsonia intracellularis PHE/MN1-00]
          Length = 306

 Score =  159 bits (401), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 63/282 (22%), Positives = 109/282 (38%), Gaps = 30/282 (10%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFD--QIIRKSGDFDYRKITTKH---IRSGVES 125
           L  LISE         L+ N+  +++   D   +  +    ++  I  ++       +  
Sbjct: 14  LDKLISE-------RGLSHNTIQAYKQDIDVFYLFFQDAGCNFNSIDDEYIMLFIIWLRK 66

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           R  +  +  + L+S+R  F W V ++ +  NP L ++ PK  +      ++++M +  + 
Sbjct: 67  RGDSSRTLARRLSSIRNFFHWCVEEDILLSNPALLIDGPKLPSLLPNILSQDEMLRLLTT 126

Query: 186 WSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240
                  G + ++  E L  SG+R S+     V     +   IK   K G    + L   
Sbjct: 127 PDITNKLGFRDKVILELLYASGIRVSELIGVHVLDFDQDKGIIKVFGKGGKERYIPLHSS 186

Query: 241 FMKLL---------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289
            MKLL           TPI K   F+N   + +         K  A  A +NKS   H  
Sbjct: 187 AMKLLIHYVQKIRPMFTPIEKF-LFLNRSGKGLTRQAIWKIIKRYALLASINKSISPHTF 245

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330
           R   AT   + GA    +    G   +   E YT   +DR++
Sbjct: 246 RHTFATHLLEGGADLRSVQLLLGHVDMSATELYTHVQSDRLK 287


>gi|119505219|ref|ZP_01627294.1| site-specific tyrosine recombinase XerD [marine gamma
           proteobacterium HTCC2080]
 gi|119458910|gb|EAW40010.1| site-specific tyrosine recombinase XerD [marine gamma
           proteobacterium HTCC2080]
          Length = 282

 Score =  159 bits (401), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 48/268 (17%), Positives = 101/268 (37%), Gaps = 23/268 (8%)

Query: 85  GSLAVNSRISFESYF----DQIIRKSGDFDYRK--ITTKHIRSGVESRKHTPSSAIQFLT 138
             L+ N+  ++        + +  ++ +          +        +  +P S+ +FL+
Sbjct: 3   RGLSENTLAAYRRDLSLYDEWLAEQTAESLLTAGSSQIQSYLGLKLRQGASPRSSARFLS 62

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194
           + R  ++WA+R+ ++  +P L +E PK+     +  ++ D+++         +   + R 
Sbjct: 63  AARSFYRWALREGHIVEDPTLRIESPKQGRPLPKSLSETDVERLLGAPDLELALEFRDRT 122

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLL---AMTPI 250
             E L   GLR S+     V+ +  N   ++   K G    V + +  +  L      P 
Sbjct: 123 MLEMLYACGLRVSELVGLQVEQVGLNQGIVRVLGKGGKERLVPMGEEALDWLIQYMRGPR 182

Query: 251 -------GKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAG 301
                       F +N  ++M    F    K    +AG+  + S H +R   AT   + G
Sbjct: 183 IELLKGQSSNVLFPSNRSREMTRQTFWYRIKLYGERAGIQSHLSPHTLRHAFATHLLNHG 242

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRI 329
           A    +    G   +   + YT  A + 
Sbjct: 243 ADLRVVQMLLGHSDLSTTQIYTHVAKQR 270


>gi|262089688|gb|ACY24783.1| XerD tyrosine recombinase [uncultured organism]
          Length = 323

 Score =  159 bits (401), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 52/290 (17%), Positives = 107/290 (36%), Gaps = 26/290 (8%)

Query: 72  KWLISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFDYRKI-----TTKHIRSGVE 124
             LI+EY   A W    L+ N++ S+     Q          + I       +       
Sbjct: 31  SQLIAEYL-DAIWMEKGLSHNTQESYRRDLSQFAMWLNQQGRQLIGVDPALVQDYLDIRL 89

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
            +K +  ++ +FL+ +R L+++ +R+  ++ +P   ++ PK      +  ++ D++   +
Sbjct: 90  QQKLSSRTSARFLSCVRGLYRYLLRESRISESPVALIDNPKLSRSLPKSLSETDVEALLA 149

Query: 185 F----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPD 239
                   G + R   E L   GLR ++     +  +      ++    G+    + + +
Sbjct: 150 APDLSDPVGLRDRTMLEVLYACGLRVTELVELTMPQINLRQNVVRVMGKGSKERLIPMGE 209

Query: 240 GFMKLLAMTPIGKETFFINN----------DKQKMNATQFSIWFKAKATKAGVNK--SAH 287
                L           +NN            Q M    F    K  A  AG+ K  S H
Sbjct: 210 EAAAWLVRYLREARPVLLNNMPDEVVFPSTRAQPMTRQTFWYRIKHWAMVAGIKKDLSPH 269

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
            +R   AT   + GA    +    G   +   + YT  A ++R+  ++++
Sbjct: 270 TLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVA-KLRMKQQHAQ 318


>gi|77359472|ref|YP_339047.1| site-specific tyrosine recombinase XerD [Pseudoalteromonas
           haloplanktis TAC125]
 gi|76874383|emb|CAI85604.1| site-specific tyrosine recombinase XerD [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 308

 Score =  158 bits (400), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 46/271 (16%), Positives = 99/271 (36%), Gaps = 19/271 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFLTSMR 141
             ++ N+  ++ S  D+  +     +   +T   + S +  R      P S  + +++++
Sbjct: 33  QGVSENTLSAYRSDLDKFCQFLKGKNLMTVTGLDVESYLAHRVDLGLKPRSTARSISALK 92

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFE 197
             +++ VR++ ++ +P L++ +PK      +  ++ +++   S        G + +   E
Sbjct: 93  RFYQYFVREKLISDSPMLNIAQPKAGQSLPKTLSEAEVEALLSAPNTDEPMGLRDKAMLE 152

Query: 198 FLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVEL-------PDGFMKLLAMTP 249
            L  +GLR S+     ++ +           K      V L        + F+K+     
Sbjct: 153 LLYATGLRVSELVGLRIEQINLRQAVVFVKGKGNKERLVPLGEEAMYWLEQFLKVGRAQM 212

Query: 250 IGKET--FFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAH 305
           I   T   F +     M    F    K  A  A +    S H +R   AT   + GA   
Sbjct: 213 IKHATDFVFPSKRGVGMTRQTFWHRVKHYAILASIESSLSPHTLRHAFATHLLNHGADLR 272

Query: 306 ELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
            +    G   +   + YT  A+     +   
Sbjct: 273 VVQMMLGHSDLSTTQIYTHVANERLKSVHAQ 303


>gi|58337257|ref|YP_193842.1| integrase-recombinase [Lactobacillus acidophilus NCFM]
 gi|227903842|ref|ZP_04021647.1| integrase-recombinase [Lactobacillus acidophilus ATCC 4796]
 gi|58254574|gb|AAV42811.1| integrase-recombinase [Lactobacillus acidophilus NCFM]
 gi|227868729|gb|EEJ76150.1| integrase-recombinase [Lactobacillus acidophilus ATCC 4796]
          Length = 301

 Score =  158 bits (400), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 50/284 (17%), Positives = 105/284 (36%), Gaps = 25/284 (8%)

Query: 75  ISEYRK-SAHWGSLAVNSRISFESYFDQII-----RKSGDFDYRKITTKHIRSGVESRKH 128
           I +Y + S     L+VN+  ++    ++ +          +           +       
Sbjct: 10  IDDYLRYSQIERGLSVNTINAYRQDLEEYLTFVKKENMTSWPTEATDVDAFLARQHDLNK 69

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKS 184
             SS  + ++S+R  ++W  RQ    +NP L ++ PK++ +     T++++     Q  +
Sbjct: 70  ATSSISRLISSLRKFYQWLARQNIQKLNPMLEIDLPKKEHKLPIALTQDEVVNLLDQPNT 129

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVEL----PD 239
               G + +   E L  +G+R S+     +Q L  ++  ++   K      + +     D
Sbjct: 130 KQKLGLRDKAILETLYATGMRVSELINLKLQDLHEDLGLVRVLGKGAKERLIPISSVALD 189

Query: 240 GFMK--------LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289
              K        L+       E  F+NN  +++         K     AG+ K  + H +
Sbjct: 190 WLKKYEKQVRDPLILNVGKDDEHIFLNNRGKQLTRQAIWQMIKKYCQLAGIAKDVTPHTL 249

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           R   AT   + GA    +    G   +   + YT  + +  L +
Sbjct: 250 RHTFATHLLENGADLRVVQEILGHSDISTTQIYTNLSQKHILQV 293


>gi|300173433|ref|YP_003772599.1| tyrosine recombinase XerD [Leuconostoc gasicomitatum LMG 18811]
 gi|299887812|emb|CBL91780.1| tyrosine recombinase XerD [Leuconostoc gasicomitatum LMG 18811]
          Length = 298

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 53/304 (17%), Positives = 100/304 (32%), Gaps = 32/304 (10%)

Query: 68  PTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVE 124
              +   I++Y         L+ N+  S+     Q      +       I    I + + 
Sbjct: 2   THKIDSAIADYLHYIRIERGLSDNTIKSYHQDLQQFALYVTTEKLQLNDIDHIAILTWLN 61

Query: 125 SRKHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
           + +    S     + +TS+R  F + +++  +  NP   V  PK+        T  ++  
Sbjct: 62  NLREQGKSNNSVIRMVTSLRKFFGYLLQEGLILHNPMTDVRPPKKAEHLPSVLTVAEIDA 121

Query: 182 FKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE 236
             +        G + R   E L  +GLR S+     +  L   +  I+T  K      + 
Sbjct: 122 LLAVPTETTPLGVRNRTLIEVLYATGLRVSELVNLKMSDLHLQLGLIQTIGKGDKERIIP 181

Query: 237 LPDGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNK-- 284
           + +     L                    F+N+   +++        K     AG+ K  
Sbjct: 182 IGEVAADWLEKYFSNSRLLLLKGNESPFVFLNDRGNQLSRQGVWKIIKKLVLLAGITKDV 241

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
           S H +R   AT   + GA    +    G   +   + YT           + +R+S V D
Sbjct: 242 SPHTLRHSFATHILENGADLRIVQELLGHADISTTQIYTH---------ISKKRLSEVYD 292

Query: 345 SDDP 348
           +  P
Sbjct: 293 NFHP 296


>gi|163798313|ref|ZP_02192240.1| putative integrase [alpha proteobacterium BAL199]
 gi|159176400|gb|EDP60988.1| putative integrase [alpha proteobacterium BAL199]
          Length = 285

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 58/286 (20%), Positives = 108/286 (37%), Gaps = 22/286 (7%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPS 131
           ++  YR+S+ +  LA  ++  +    D + +  G  D   I+T  + + ++    K    
Sbjct: 1   MVDAYRRSSAFTKLAPRTKRDYHQVLDYLRKPLGAADVDGISTPELATLIDRIAEKRNWR 60

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVE---RPKRKTEGIRPWTKEDMQQFKSFWSE 188
            A   L  +  +F   + +    +NP   V    RP+      RPWT  +++      + 
Sbjct: 61  FANYCLAVISRVFSIGILRGKAKVNPATGVPKLTRPREAPAANRPWTDHEIE--VVLAAA 118

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTG----TIITVELPDG 240
            +   LA     Y+GLR  D+    +       +    + +  KT       + + +   
Sbjct: 119 PAGVALAVGLGAYAGLREGDAIALPMSAYSKVGRRAAITFRPGKTHRADEDPLVLPVHPR 178

Query: 241 FMKLLAMTPIGKETFF-INNDKQKMNATQFSIW-FK-----AKATKAGVNKSAHGVRKFS 293
            ++L+     G  T   +    +   +  F    F+       A K G   + HG+R   
Sbjct: 179 LVQLIDNRKAGDSTVMVLGMRGRPYTSDGFRTMLFRVIAQLEAAGKVGEGLTFHGLRHTV 238

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
           AT  +D GA    +    GW +   A+ YTK  DR +      R+I
Sbjct: 239 ATKLSDLGADNETIADVLGWSSTAMAKRYTKTRDRTKRAAAGLRQI 284


>gi|288928808|ref|ZP_06422654.1| integrase/recombinase XerD [Prevotella sp. oral taxon 317 str.
           F0108]
 gi|288329792|gb|EFC68377.1| integrase/recombinase XerD [Prevotella sp. oral taxon 317 str.
           F0108]
          Length = 304

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 49/278 (17%), Positives = 104/278 (37%), Gaps = 23/278 (8%)

Query: 70  TLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKH---IRSGV 123
           T+  ++  Y +      +L+ N+  ++ +    ++           ++  +H     + +
Sbjct: 7   TVDNMVKAYMRYLKLERNLSPNTIEAYRNDLRWLLAYVNFHGLKVEELKLEHLDNFSASL 66

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
             ++  P S  + L+ +R  FK+ +   ++  +P   +  P  +       +  ++ + +
Sbjct: 67  HDQRIMPRSQARILSGVRSFFKFLLLDGFIDADPTELLVSPHVRNALPDVLSTAEVDRLE 126

Query: 184 SFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVEL- 237
           +       EG + R   E L   GLR S+     + +L      ++ T K      V + 
Sbjct: 127 ASIDLSKWEGQRNRAIVEVLFSCGLRVSELVNLKLSNLYVEEKFVRVTGKGDKERLVPIS 186

Query: 238 ---PDGF------MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286
               D           + + P  ++  F+N     +  T   I  K +A  AG+ K  S 
Sbjct: 187 SRALDELNAWFADRNAMRIKPGEEDYVFLNRRGAHLTRTMILIMIKRQAVAAGITKTISP 246

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           H +R   AT   + GA    + A  G + +   E YT 
Sbjct: 247 HTLRHSFATALLEGGADLIAIQAMMGHEDIATTEIYTH 284


>gi|299821615|ref|ZP_07053503.1| tyrosine recombinase XerD [Listeria grayi DSM 20601]
 gi|299817280|gb|EFI84516.1| tyrosine recombinase XerD [Listeria grayi DSM 20601]
          Length = 296

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 53/273 (19%), Positives = 105/273 (38%), Gaps = 25/273 (9%)

Query: 85  GSLAVNSRISFES---YFDQIIRKSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFLT 138
             LA N+  +++    YFD  +   G  D   IT   + + +   +    +P +  ++L 
Sbjct: 16  KGLAANTIQAYKRDLRYFDSFLEIEGITDPNSITRGTVVAFIAFARDADKSPRTIARYLA 75

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRL 194
           S+R  F + +  + +  +P + +E PK+     +    E++++  +        G + + 
Sbjct: 76  SLRSFFHFLLHDQKMDHDPMIQIETPKQTKALPKVLHLEEVEKLLAAPDPNSILGLRDQA 135

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVEL-----------PDGFM 242
             E L  +GLR S+     +  L  ++  I+T  K      + L            +   
Sbjct: 136 MLEILYATGLRVSELIHLKLDDLHLHMGFIQTIGKGDKERIIPLGHTATAVLTKYLEEAR 195

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
             L       +  F+N+    +    F    K  A KAG++K  + H +R   AT   + 
Sbjct: 196 PKLRKPKYRNDYVFLNHHGGGLTRQGFWKLLKQLAQKAGIDKPITPHTLRHSFATHLLEN 255

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           GA    +    G   +   + YT    ++RL  
Sbjct: 256 GADLRSVQELLGHADISTTQIYTH-VTKLRLQD 287


>gi|89091996|ref|ZP_01164951.1| tyrosine recombinase XerD [Oceanospirillum sp. MED92]
 gi|89083731|gb|EAR62948.1| tyrosine recombinase XerD [Oceanospirillum sp. MED92]
          Length = 306

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 54/282 (19%), Positives = 102/282 (36%), Gaps = 25/282 (8%)

Query: 72  KWLISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFDYR-----KITTKHIRSGVE 124
             LI  Y   A W    L+ N+  S+     Q      D         ++  +   +   
Sbjct: 14  AQLIDIYL-DAIWMEKGLSDNTLSSYRRDLVQFSVWLTDQGVIMKRCCRVDIQKYLAWRV 72

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
             +   SS  + L+ +R  +++ +R+E ++ +P L ++ PK+     +  T+ +++    
Sbjct: 73  KERRKASSTSRMLSCLRGFYRYLLREEMISEDPLLLIDSPKKGRPLPKTLTESEVELLLD 132

Query: 185 FWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPD 239
                     + R   E L  +GLR S+     +  +  N   ++   K G    V L +
Sbjct: 133 APDLSDPVQYRDRAMLEVLYATGLRVSELVALRLHEINLNQGVLRVMGKGGKERLVPLGE 192

Query: 240 GFMKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287
             +  +            T    +  F +   Q+M    F    K  A  AG++K  S H
Sbjct: 193 EAIHWVMRYMGEVRPALFTHDVSDVLFPSRRGQQMTRQTFWHRIKRHALTAGIDKTLSPH 252

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            +R   AT   + GA    +    G   +   + YT  A + 
Sbjct: 253 VLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQQR 294


>gi|167622800|ref|YP_001673094.1| tyrosine recombinase XerD [Shewanella halifaxensis HAW-EB4]
 gi|167352822|gb|ABZ75435.1| tyrosine recombinase XerD [Shewanella halifaxensis HAW-EB4]
          Length = 300

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 52/291 (17%), Positives = 108/291 (37%), Gaps = 24/291 (8%)

Query: 70  TLKWLISEYRKSA-HWGSLAVNSRISFE---SYFDQIIRKSGDFDYR--KITTKHIRSGV 123
           T   LI  +         L+ N+  ++     + D+ ++K G       ++  +   +  
Sbjct: 6   TPDSLIDLFLDDLWSTKGLSDNTLSAYRTDLRHLDRYLQKLGGELVTCSQLEVRDYLAER 65

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
             +    +S+ + ++S+R  + + + ++ +  +P   +E PK   +     ++ED+ +  
Sbjct: 66  FDKGSAKTSSARMMSSLRRFYGYLIVKKQIDTDPMALIESPKLSRKLPDSLSEEDIDRLL 125

Query: 184 SF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELP 238
           +          + +   E L  +GLR S+     ++ L      ++ T K G    V L 
Sbjct: 126 AEPIEDDPIECRDKAMLELLYATGLRVSELVGLTMEQLSLRQGLVRITGKGGKERLVPLG 185

Query: 239 D----------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286
           +           F +   +     +  F +   Q+M    F    K  A +AG+    S 
Sbjct: 186 ELAITEIESYLKFARTELLKGKQSDVLFPSKRGQQMTRQTFWHRIKLYALRAGISTELSP 245

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
           H +R   AT   + GA    +    G   +   + YT  A   RL   +S 
Sbjct: 246 HTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAT-ARLATLHSE 295


>gi|110833664|ref|YP_692523.1| integrase/recombinase XerD [Alcanivorax borkumensis SK2]
 gi|110646775|emb|CAL16251.1| integrase/recombinase XerD [Alcanivorax borkumensis SK2]
          Length = 312

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 52/284 (18%), Positives = 100/284 (35%), Gaps = 30/284 (10%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQII-----RKSGDFDYRKITTKHIRSGVESR 126
            WL  ++ +      L+ +S  ++     Q+      ++       +       +    +
Sbjct: 19  SWLDQQWLE----KGLSEHSLSNYRRDLSQLACWLQGQRVALLGCERYQLLEFLAYRHQQ 74

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185
             +  S  + L++++  ++W  R+  ++ +P L +ERPK      +  ++ D++   +  
Sbjct: 75  GLSARSVARQLSAVKSFYRWLKREGRISEDPALLIERPKLGRPLPKTLSEADVEALLAAP 134

Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241
                 G + R   E L  +GLR ++        +      I+   K      V L +  
Sbjct: 135 DLSTPLGLRDRAMLEVLYATGLRVTELVTLTQSQVNPRQGVIRVIGKGDKERLVPLGEEA 194

Query: 242 MKLL--------------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--S 285
           +  L              A TP  +E  F +     M    F    K  A  AGV K  S
Sbjct: 195 LHWLERYLREGRALLMGGAATPGNQELLFPSRRGTCMTRQTFWHRIKQLAVVAGVQKKLS 254

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            H +R   AT   + GA    +    G   +   + YT  A + 
Sbjct: 255 PHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAQQR 298


>gi|303326777|ref|ZP_07357219.1| tyrosine recombinase XerD [Desulfovibrio sp. 3_1_syn3]
 gi|302862765|gb|EFL85697.1| tyrosine recombinase XerD [Desulfovibrio sp. 3_1_syn3]
          Length = 309

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 58/304 (19%), Positives = 105/304 (34%), Gaps = 31/304 (10%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD 110
           +TG    +       + P  L +L+++         L+  +  S+    +       +  
Sbjct: 1   MTGMEQSQAVPPLSNQLPAWLDYLLAQ-------RGLSPRTVESYGQDLESFFLFEEELA 53

Query: 111 --------YRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162
                     +       + + SR +T  +  + L+++R  F +AV +  +  NP L +E
Sbjct: 54  QSGGSASCLDEQEIFLYLAWLRSRGNTGRTLARRLSALRAFFAFAVEEGTLKTNPALLLE 113

Query: 163 RPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218
            PK         ++E+M++           G + R   E L  +GLR S+ C   V  L 
Sbjct: 114 NPKLPQHLPEVLSREEMEKLLVLPDMDEKSGRRDRCMLEMLYAAGLRVSELCNLSVADLD 173

Query: 219 NNIFSIKT-QKTGTIITVELPDG--------FMKLLAMTPIGKETFFINNDKQKMNATQF 269
                ++   K      V L D               +   G    F+N   + ++    
Sbjct: 174 LQRGLVRVFGKGAKERLVPLHDMIQALLGDYLRSWRPLFSPGGNQLFVNRSGRALSRQYI 233

Query: 270 SIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GA 326
               K     AG+ +  S H  R   AT   + GA    +    G   +   E YT   A
Sbjct: 234 WKMVKKYTLLAGIRRAVSPHTFRHSFATHLLEGGADLRAVQLLLGHADISATEIYTHVQA 293

Query: 327 DRIR 330
           +R+R
Sbjct: 294 ERLR 297


>gi|146308415|ref|YP_001188880.1| site-specific tyrosine recombinase XerD [Pseudomonas mendocina ymp]
 gi|145576616|gb|ABP86148.1| tyrosine recombinase XerD subunit [Pseudomonas mendocina ymp]
          Length = 298

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 47/275 (17%), Positives = 97/275 (35%), Gaps = 23/275 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYR-----KITTKHIRSGVESRKHTPSSAIQFLTS 139
             L+ ++R ++ S  +           +     +       +    + +   S  +FL+ 
Sbjct: 20  KGLSAHTRAAYRSDLEHFNHWLDGRGLQLQCIGRDAILDHLAWRLEQGYQARSTARFLSG 79

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195
           +R  +++ +R+  V  +P L VE P+      +  ++ D++            G + R  
Sbjct: 80  VRGFYRFLLREGVVEEDPSLQVELPQIGRPLPKSLSEADVEALLQAPDLDDPIGLRDRAM 139

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKET 254
            E L   GLR S+     ++ +      ++   K      V L +  +  +         
Sbjct: 140 LEVLYACGLRVSELVGLTLEQVNLRQGVLRVFGKGSKERLVPLGEEAIAWIERYSREARP 199

Query: 255 FFI----------NNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGA 302
             +          +   ++M    F    K +A  AG+ KS   H +R   AT   + GA
Sbjct: 200 LLLGGKPSDVLFPSLRGEQMTRQTFWHRIKHQAKVAGIGKSLSPHTLRHAFATHLLNHGA 259

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
               +    G   +   + YT  A R RL   +++
Sbjct: 260 DLRVVQMLLGHSDLSTTQIYTHIA-RARLQELHAK 293


>gi|85712976|ref|ZP_01044015.1| Site-specific recombinase [Idiomarina baltica OS145]
 gi|85693214|gb|EAQ31173.1| Site-specific recombinase [Idiomarina baltica OS145]
          Length = 301

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 50/273 (18%), Positives = 98/273 (35%), Gaps = 22/273 (8%)

Query: 85  GSLAVNSRISFESYFDQIIR-----KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
             ++ N++ ++ S   +        + G         +       S+  +P S  +FL++
Sbjct: 24  HGVSENTQAAYRSDLKKFCEFLAQHRLGLHQVTSTVVQDYLLWRRSQGLSPRSTSRFLSA 83

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKSFWSEGSQPRLA 195
           M+ L  +A++  +   +P   ++RPK         T+ D+             G + R  
Sbjct: 84  MKKLTPYALKSGWFVTDPIAKLKRPKMSPAVPHSLTESDVLSLLDAPDVDTPIGLRDRAM 143

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM-TPIGKE 253
            E L  +GLR ++  R     +      ++   K      V L +  ++ L+     G+ 
Sbjct: 144 LEVLYATGLRVTELVRLQYDQVSLAQGLVRVVGKGDKERLVPLGEEAIEWLSRYMKSGRP 203

Query: 254 TF--------FINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGAT 303
                     FI      +    F    +  A +A +N   S H +R   AT   + GA 
Sbjct: 204 VLSERQSGWVFITQRGTLLTRQAFWYRIRTYAEQAQINSHLSPHTLRHAFATHLLNHGAD 263

Query: 304 AHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
              L    G   +   + YT+ A + RL   ++
Sbjct: 264 LRVLQMLLGHSDLSTTQIYTQVA-KERLQQMHA 295


>gi|294674930|ref|YP_003575546.1| tyrosine recombinase XerD [Prevotella ruminicola 23]
 gi|294472077|gb|ADE81466.1| tyrosine recombinase XerD [Prevotella ruminicola 23]
          Length = 303

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 51/276 (18%), Positives = 100/276 (36%), Gaps = 23/276 (8%)

Query: 72  KWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVES 125
           K ++  Y +      +++ N+  +++    +++           D      +H  + +  
Sbjct: 5   KGIVKAYVRYLKLQRNMSGNTLDAYQRDLRKLLDYLEHEQLAISDVTLADLEHFSASLHD 64

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
               P S  + L+ +R  FK+     Y   +P   +E P+         T +++ + +  
Sbjct: 65  IGIHPRSQCRILSGIRSFFKFVQLDGYRDDDPTELLESPQIGDHLPEVLTTQEVDRLEES 124

Query: 186 WS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240
                 EG + R   E L   GLR S+     +  L  +   ++   K      V +   
Sbjct: 125 IDLSKWEGHRNRAIIEVLFSCGLRVSELVNLKLSDLYLDEEYVRVLGKGSKERLVPISPK 184

Query: 241 F----------MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288
                        L+ + P  ++  F+N     +  T   I  KA+A +A + K  S H 
Sbjct: 185 AIQELRFWFNVRNLMKIKPGEEDYVFLNRRGAHLTRTMILIMIKAQAKEARIQKTISPHT 244

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +R   AT   + GA    + A  G + +   E YT 
Sbjct: 245 LRHSFATALLEGGADLRFIQALLGHEDIGTTEIYTH 280


>gi|226945992|ref|YP_002801065.1| site-specific tyrosine recombinase XerD [Azotobacter vinelandii DJ]
 gi|226720919|gb|ACO80090.1| Site-specific tyrosine recombinase [Azotobacter vinelandii DJ]
          Length = 298

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 53/275 (19%), Positives = 99/275 (36%), Gaps = 23/275 (8%)

Query: 85  GSLAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
             L+ ++R ++ S  +        R     +  +       +      +   S  +FL+ 
Sbjct: 20  KGLSAHTRAAYRSDLELFNGWLCERGLALVEVGRELILDHLAWRVDAGYKARSTARFLSG 79

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195
           +R  F++ +R+  +A +P L VE P+      +  ++ D++   +        G + R  
Sbjct: 80  LRGFFRYLLREGVIAGDPTLQVELPQLGRPLPKSLSEADVEALLAAPEDDDPLGLRDRAM 139

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM------- 247
            E L   GLR S+     ++ L      ++   K      V L +  +  L         
Sbjct: 140 LEVLYACGLRVSELVGLRLEQLNLRQGVVRVFGKGSKERLVPLGEEAIAWLERYLVEARP 199

Query: 248 ---TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGA 302
                   +  F +   ++M    F    K  A  AG+ KS   H +R   AT   + GA
Sbjct: 200 LLLGGRPSDVLFPSLRGEQMTRQTFWHRIKHHARLAGIGKSLSPHTLRHAFATHLLNHGA 259

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
               +    G   +   + YT  A R RL   ++R
Sbjct: 260 DLRVVQMLLGHSDLSTTQIYTHIA-RARLQELHAR 293


>gi|152989006|ref|YP_001346765.1| site-specific tyrosine recombinase XerD [Pseudomonas aeruginosa
           PA7]
 gi|150964164|gb|ABR86189.1| tyrosine recombinase XerD [Pseudomonas aeruginosa PA7]
          Length = 298

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 56/288 (19%), Positives = 103/288 (35%), Gaps = 26/288 (9%)

Query: 74  LISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFDYR-----KITTKHIRSGVESR 126
           LI  +   A W    LA N+R ++ +  +Q          R     +       +    +
Sbjct: 8   LIDRFL-DALWLEKGLADNTREAYRNDLEQFNAWLDGHGLRLEGVGRDAILDHLAWRLEQ 66

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185
            +   S  +FL+ +R  +++ +R   +A +P L V+ P+      +  ++ D++   +  
Sbjct: 67  GYKARSTARFLSGLRGFYRYCLRDGLIAEDPTLQVDLPQLGKPLPKSLSEADVEALLAAP 126

Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241
                 G + R   E L   GLR S+     ++ +      +K   K      V L +  
Sbjct: 127 EVDDPLGLRDRTMLEVLYACGLRVSELVGLTLEQVNLRQGVVKVFGKGSKERLVPLGEEA 186

Query: 242 MKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289
           +  L                 +  F +   ++M    F    K  A  A + KS   H +
Sbjct: 187 IGWLERYLREARADLLGGRPSDVLFPSLRGEQMTRQTFWHRIKRHAQVAAIGKSISPHTL 246

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
           R   AT   + GA    +    G   +   + YT  A R RL   ++R
Sbjct: 247 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHIA-RARLQDLHAR 293


>gi|300812172|ref|ZP_07092616.1| tyrosine recombinase XerD [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|300496857|gb|EFK31935.1| tyrosine recombinase XerD [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
          Length = 301

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 45/283 (15%), Positives = 106/283 (37%), Gaps = 24/283 (8%)

Query: 75  ISEYRK-SAHWGSLAVNSRISFESYFDQII-----RKSGDFDYRKITTKHIRSGVESRKH 128
           I++Y + S     L+ N+  +++    + +      +   +    +      +       
Sbjct: 11  INDYLRYSQIERGLSPNTIAAYKQDLLEFLAFVKEEQMPAWPLEAVEIDAFLAKERDLGK 70

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKS 184
             SS  + ++++   ++W VRQ+ +A++P   ++ PKR+       T+ ++    +Q   
Sbjct: 71  ANSSISRLVSTLSRFYQWLVRQQLIALDPMSQIDAPKREKRMPLALTEAEVGKLLEQPDL 130

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMK 243
               G + R   E L  +G+R S++    +  +  ++  IK   K      + +    + 
Sbjct: 131 TTDLGIRDRALVELLYATGMRVSEAVNLQLADVHADLQLIKVLGKGSKERLIPVSALALD 190

Query: 244 LLAM-TPIGK----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290
            +    P+            +  F+N+   ++         K    +AG+ K  + H +R
Sbjct: 191 WIKRYLPVRDQQLLKRGKSSDYLFLNSRGGQLTRQAVWQKIKKYCQQAGIAKDVTPHTLR 250

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
              AT   + GA    +    G   +   + YT    +  L +
Sbjct: 251 HSFATHLLEHGADLRVVQEILGHTDISTTQIYTNLTQKHILDV 293


>gi|256822057|ref|YP_003146020.1| tyrosine recombinase XerD [Kangiella koreensis DSM 16069]
 gi|256795596|gb|ACV26252.1| tyrosine recombinase XerD [Kangiella koreensis DSM 16069]
          Length = 295

 Score =  156 bits (395), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 50/275 (18%), Positives = 106/275 (38%), Gaps = 23/275 (8%)

Query: 85  GSLAVNSRISFE---SYFDQIIRKSGDFDYRK--ITTKHIRSGVESRKHTPSSAIQFLTS 139
             L+  +  S+      F+Q ++K G    R      +   +   +++++  S  +FL+S
Sbjct: 17  QGLSDATLSSYRSDLKLFNQWLQKQGKDLLRSSPFDIQQYLAERYTKQYSSRSTARFLSS 76

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLA 195
            R  +++ ++   + ++P   ++ PK +    +  +++++    S        G + +  
Sbjct: 77  ARKFYRYLIQSNQIKVDPTQQIDSPKIQPPVPKSLSEDEVDSLLSQPDLETALGLRDKAM 136

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKET 254
            E L  SGLR ++     V  +      ++   K      V + +  ++ +++       
Sbjct: 137 LELLYSSGLRITELISVEVNQIGFQQGVMRVIGKGNKERLVPIGEEALQAISLYIRHGRA 196

Query: 255 ----------FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302
                      F++   Q+M    F    K  A  AG+ K  S H +R   AT   + GA
Sbjct: 197 ELANEKVCDWLFLSTRGQRMTRQTFWHRIKLYAKTAGIRKHLSPHTLRHAFATHLLNHGA 256

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
               L    G   +   + YT  A + RL   +S 
Sbjct: 257 DLRTLQMLLGHSDLSTTQIYTHVA-KERLKQLHSE 290


>gi|170739481|ref|YP_001768136.1| integrase family protein [Methylobacterium sp. 4-46]
 gi|168193755|gb|ACA15702.1| integrase family protein [Methylobacterium sp. 4-46]
          Length = 383

 Score =  156 bits (395), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 47/343 (13%), Positives = 96/343 (27%), Gaps = 38/343 (11%)

Query: 20  KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYR 79
           +  +Y R    R      P    F+         S  + E     R        LI EY 
Sbjct: 22  RTYWYHRATGMRL--DGEPGSREFL--------LSVAEAEKTLKARHTGDNFDGLIREYT 71

Query: 80  KSAHWGS-LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE------SRKHTPSS 132
            S  +   L+ +++  +     +   + GD     +    +R          +R      
Sbjct: 72  ASLEFTDKLSASTQREYRRMLAKAESEFGDMPREVLNDPAVRGDFLDWRAKVARASGERE 131

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
           A   L+ +  +  WA     +  N     +R          W  E +  F        Q 
Sbjct: 132 ADNRLSVISAMLTWARENGRIHANHIQGFKRLYHVDRSEIIWLPEHIHAFMRVAPIELQ- 190

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT------IITVELPDGFMKLLA 246
             A    L++G R  D              +++  K+        ++ +        +L 
Sbjct: 191 -RALIMALHTGQRQGDLLVLPWSAYDGTAITLRQGKSARGRRVAPLVAIPCTQALRLMLD 249

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK------------SAHGVRKFSA 294
                          + +    F+  ++    +AG+++              H +R  + 
Sbjct: 250 GMQRVSPLILTTKTGRALQKRYFARLWEEATIEAGLDRITLPGLAEPVSLHFHDLRGTAV 309

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIR-LGIKNS 336
           T+ ++AG    ++    G           +   R R L  +  
Sbjct: 310 TMLSEAGCQPQQIATITGHSLKTVTVILDRYLARTRALADQAI 352


>gi|125973194|ref|YP_001037104.1| tyrosine recombinase XerD subunit [Clostridium thermocellum ATCC
           27405]
 gi|125713419|gb|ABN51911.1| tyrosine recombinase XerD subunit [Clostridium thermocellum ATCC
           27405]
          Length = 296

 Score =  156 bits (395), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 43/269 (15%), Positives = 106/269 (39%), Gaps = 23/269 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKI------TTKHIRSGVESRKHTPSSAIQFLT 138
             L++N+  S++   +Q I    D   + I      T       ++ +    S+  + L 
Sbjct: 18  KRLSLNTLQSYKRDIEQYITYLKDMKIQNIANTNKTTVIAYLLHLQKKGRATSTISRNLA 77

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRL 194
           S+R  +++  ++  ++ +P  ++E PK + +  +  + ++++           +G + + 
Sbjct: 78  SIRSFYQYLTKKGIISQDPTENLESPKVEKKLPQILSTKEVELLLEQPKCDDLKGYRDKA 137

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP----DGFMKLLA---- 246
             E L  +G+R S+     +  +   +  I+  K      V +     +   + L     
Sbjct: 138 MLELLYATGIRVSELISLDLDDVNLEMQYIRCNKGARERIVPIGSVSVNALQEYLTKSRN 197

Query: 247 --MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302
             +    ++  F+N + +++    F    K    +A +NK  + H +R   A    + GA
Sbjct: 198 LLIQRPDEKALFVNVNGKRLTRQGFWKIIKQYKNQAKINKDITPHTLRHSFAAHLLENGA 257

Query: 303 TAHELMATYGWKTVDQAETYTKGA-DRIR 330
               +    G   +   + Y + A +RI+
Sbjct: 258 DLRSIQEMLGHSDISSTQIYAQLAKNRIK 286


>gi|121535764|ref|ZP_01667566.1| tyrosine recombinase XerD [Thermosinus carboxydivorans Nor1]
 gi|121305663|gb|EAX46603.1| tyrosine recombinase XerD [Thermosinus carboxydivorans Nor1]
          Length = 295

 Score =  156 bits (395), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 45/263 (17%), Positives = 100/263 (38%), Gaps = 23/263 (8%)

Query: 85  GSLAVNSRISFESYFDQ--IIRKSGDFDYRKITTKHIR----SGVESRKHTPSSAIQFLT 138
             LA N+  S+     Q  +  ++   D  K + ++      + ++S+    S+  + L 
Sbjct: 16  RGLAQNTLESYGRDLRQFQLFLQNDKLDIIKDSNRNTILNYLNNLQSKGRAVSTISRNLA 75

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FWSEGSQPRL 194
           +++  +++ VR+ Y+  +P  ++E PK + +  +  +  ++++           G + + 
Sbjct: 76  AIKSFYQYLVRERYIDKDPAANLESPKLEKKLPKILSIAEVEELLKQPNSLLPTGLRDKA 135

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGK- 252
             E L  +G+R S+     +  +  ++  IK   K      V L     K +        
Sbjct: 136 MLELLYATGIRVSELISLNITDVNLDMGYIKCYGKGAKERIVPLGSIAAKCVQEYIAKGR 195

Query: 253 ---------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301
                       F+N+   ++    F    K  A +A + K  + H +R   AT   + G
Sbjct: 196 PKLVRTYDEPALFVNHHGNRLTRQGFWKIIKKYAQEANITKEITPHTLRHSFATHLLENG 255

Query: 302 ATAHELMATYGWKTVDQAETYTK 324
           A    +    G   +   + YT 
Sbjct: 256 ADLRSVQEMLGHADISTTQIYTH 278


>gi|302338068|ref|YP_003803274.1| tyrosine recombinase XerD [Spirochaeta smaragdinae DSM 11293]
 gi|301635253|gb|ADK80680.1| tyrosine recombinase XerD [Spirochaeta smaragdinae DSM 11293]
          Length = 311

 Score =  156 bits (395), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 58/281 (20%), Positives = 101/281 (35%), Gaps = 24/281 (8%)

Query: 70  TLKWLISEYRKS-AHWGSLAVNSRISFESYFDQII---RKSGDFDYRKITTK--HIRSGV 123
           T K L+ +Y        SLA  SR S+ S   +++    + G   +           +  
Sbjct: 2   TGKTLLRDYDAHLGAVLSLAPLSRESYVSAISRLLGWLEEEGKNPFSASDADLVDYLTLR 61

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
                   +  + ++ MR  F + V +EY   NP   V+ PK         + E+++ F 
Sbjct: 62  FEEGSDKHTIAKLVSIMRSFFDFLVSEEYRQDNPARMVDAPKLGRSLPSVLSIEEVEAFL 121

Query: 184 SF----WSEGSQPRLAFEFLLYSGLRCSDSCRA--GVQHLQNNIFSIKTQKTGTIITVEL 237
           +       EG + R  FE +  +GLR S++     G  +L++ I  + T K      + L
Sbjct: 122 NAIPLETPEGLRDRALFELIYSAGLRVSEAVGLSAGSLYLRDGIIRV-TGKGSKQRVIPL 180

Query: 238 PDGFMKLLAMTPIGK-----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA 286
            D   K +                  +  F++     ++       FK  +  AGV+   
Sbjct: 181 GDEARKWIGRYLTDARPLLAKSFHPTDALFLSRRGTPLSRKNVWKRFKQFSLLAGVDGKV 240

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           H +R   AT     GA    +    G   +   + YT   D
Sbjct: 241 HTLRHSFATHLLAGGADLRSVQELLGHSDISTTQIYTHIDD 281


>gi|296112007|ref|YP_003622389.1| integrase/recombinase [Leuconostoc kimchii IMSNU 11154]
 gi|295833539|gb|ADG41420.1| integrase/recombinase [Leuconostoc kimchii IMSNU 11154]
          Length = 298

 Score =  156 bits (395), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 47/286 (16%), Positives = 100/286 (34%), Gaps = 24/286 (8%)

Query: 71  LKWLISEYRKSAH-WGSLAVNSRISFESYFDQII--RKSGDFDYRKITTKHIRSGVESRK 127
           +   I++Y         L+ N+  S++    Q      + + +   +    I + +   +
Sbjct: 5   IDNAIADYLHYIRIERGLSDNTIKSYQQDLKQFSVYMTAENLNLNAVDHVVILTWLNQLR 64

Query: 128 HTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK- 183
               S     + +TS+R  F + +++  +  NP   V+ PK+        +  ++     
Sbjct: 65  ELNKSNNSVIRMVTSLRKFFGYLLQENVIRHNPMSDVKPPKKAEHLPAVLSVAEIDALLQ 124

Query: 184 ---SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPD 239
                 + G + R   E +  +GLR S+     +  L   +  I+T  K      + + +
Sbjct: 125 VPTEKTALGLRNRALIEVMYATGLRVSELVNLKMSDLHLQLGLIQTIGKGDKERIIPIGE 184

Query: 240 GFMKLLAMTPIGKET----------FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287
              + L                    F+N+   +++        K   + AG++K  S H
Sbjct: 185 IATEWLERYFSHSRLTLLKDKVSPFVFLNDRGTQLSRQGVWKIIKNLVSAAGIDKDVSPH 244

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
            +R   AT   + GA    +    G   +   + YT    + RL  
Sbjct: 245 TLRHSFATHILENGADLRIVQELLGHADISTTQIYTH-ISKKRLSE 289


>gi|161507450|ref|YP_001577404.1| integrase/recombinase [Lactobacillus helveticus DPC 4571]
 gi|260101638|ref|ZP_05751875.1| integrase/recombinase XerD [Lactobacillus helveticus DSM 20075]
 gi|160348439|gb|ABX27113.1| Integrase/recombinase [Lactobacillus helveticus DPC 4571]
 gi|260084571|gb|EEW68691.1| integrase/recombinase XerD [Lactobacillus helveticus DSM 20075]
 gi|323466665|gb|ADX70352.1| Tyrosine recombinase xerD [Lactobacillus helveticus H10]
 gi|328467464|gb|EGF38539.1| tyrosine recombinase xerD [Lactobacillus helveticus MTCC 5463]
          Length = 301

 Score =  156 bits (395), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 49/292 (16%), Positives = 105/292 (35%), Gaps = 25/292 (8%)

Query: 67  KPTTLKWLISEYRK-SAHWGSLAVNSRISFESYFD---QIIRKSG--DFDYRKITTKHIR 120
           +   L+  I +Y + S     L+ N+  ++    +     ++K G   +           
Sbjct: 2   EKNKLQDQIDDYLRYSQIERGLSSNTITAYRQDLEEYLAFVKKEGMDSWPTEASDVDAFL 61

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
           +         SS  + ++SMR  ++W  RQ    +NP L ++ PK++        ++++ 
Sbjct: 62  ARQYDLNKATSSISRLISSMRKFYQWLARQNIQKLNPMLEIDLPKKERRLPVALNQKEIN 121

Query: 181 QFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITV 235
              +        G + R   E L  +G+R S+     +Q L  ++  ++   K      +
Sbjct: 122 DLLAQPDIKRKLGLRDRAILETLYATGMRVSELINLELQDLHEDLGLVRVLGKGSKERLI 181

Query: 236 ELP------------DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
            +             +    L+       E  F+N+  +++         K     AG+ 
Sbjct: 182 PISSVALHWIKQYQKEVRDPLILKAGQNDEHIFLNSRAKQLTRQAIWQMIKKYCQSAGIT 241

Query: 284 K--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           K  + H +R   AT   + GA    +    G   +   + YT  + +  L +
Sbjct: 242 KDVTPHTLRHTFATHLLENGADLRVVQEILGHSDISTTQIYTNLSQKHILQV 293


>gi|256003998|ref|ZP_05428984.1| tyrosine recombinase XerD [Clostridium thermocellum DSM 2360]
 gi|281417393|ref|ZP_06248413.1| tyrosine recombinase XerD [Clostridium thermocellum JW20]
 gi|255992126|gb|EEU02222.1| tyrosine recombinase XerD [Clostridium thermocellum DSM 2360]
 gi|281408795|gb|EFB39053.1| tyrosine recombinase XerD [Clostridium thermocellum JW20]
 gi|316940575|gb|ADU74609.1| tyrosine recombinase XerD [Clostridium thermocellum DSM 1313]
          Length = 294

 Score =  156 bits (395), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 43/269 (15%), Positives = 106/269 (39%), Gaps = 23/269 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKI------TTKHIRSGVESRKHTPSSAIQFLT 138
             L++N+  S++   +Q I    D   + I      T       ++ +    S+  + L 
Sbjct: 16  KRLSLNTLQSYKRDIEQYITYLKDMKIQNIANTNKTTVIAYLLHLQKKGRATSTISRNLA 75

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRL 194
           S+R  +++  ++  ++ +P  ++E PK + +  +  + ++++           +G + + 
Sbjct: 76  SIRSFYQYLTKKGIISQDPTENLESPKVEKKLPQILSTKEVELLLEQPKCDDLKGYRDKA 135

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP----DGFMKLLA---- 246
             E L  +G+R S+     +  +   +  I+  K      V +     +   + L     
Sbjct: 136 MLELLYATGIRVSELISLDLDDVNLEMQYIRCNKGARERIVPIGSVSVNALQEYLTKSRN 195

Query: 247 --MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302
             +    ++  F+N + +++    F    K    +A +NK  + H +R   A    + GA
Sbjct: 196 LLIQRPDEKALFVNVNGKRLTRQGFWKIIKQYKNQAKINKDITPHTLRHSFAAHLLENGA 255

Query: 303 TAHELMATYGWKTVDQAETYTKGA-DRIR 330
               +    G   +   + Y + A +RI+
Sbjct: 256 DLRSIQEMLGHSDISSTQIYAQLAKNRIK 284


>gi|315127593|ref|YP_004069596.1| site-specific tyrosine recombinase XerD [Pseudoalteromonas sp.
           SM9913]
 gi|315016107|gb|ADT69445.1| site-specific tyrosine recombinase XerD [Pseudoalteromonas sp.
           SM9913]
          Length = 308

 Score =  156 bits (395), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 46/270 (17%), Positives = 99/270 (36%), Gaps = 19/270 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFLTSMR 141
             ++ N+  ++ S  D+  +         +T+  + S +  R      P S  + +++++
Sbjct: 33  QGVSENTLSAYRSDLDKFCQFLKGESLMTVTSLDVESYLAHRVDLGLKPRSTARSISALK 92

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFE 197
             +++ VR++ ++ +P +++ +PK      +  ++ +++   S        G + +   E
Sbjct: 93  RFYQYFVREKIISDSPMVNIAQPKAGQSLPKTLSEAEVEALLSAPNIEEPMGLRDKAMLE 152

Query: 198 FLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVEL-------PDGFMKLLAMTP 249
            L  +GLR ++     ++ +           K      V L        + F+KL     
Sbjct: 153 LLYATGLRVTELVGLRMEQINLRQAVVFVKGKGNKERLVPLGEEAMYWLEQFLKLGRAQM 212

Query: 250 IGKET--FFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAH 305
           I   T   F +     M    F    K  A  A V    S H +R   AT   + GA   
Sbjct: 213 IKHATDFVFPSKRGVGMTRQTFWHRIKHYAILASVESPLSPHTLRHAFATHLLNHGADLR 272

Query: 306 ELMATYGWKTVDQAETYTKGADRIRLGIKN 335
            +    G   +   + YT  A+     +  
Sbjct: 273 VVQMMLGHSDLSTTQIYTHVANERLKSVHA 302


>gi|289675311|ref|ZP_06496201.1| site-specific recombinase, phage integrase family protein
           [Pseudomonas syringae pv. syringae FF5]
          Length = 312

 Score =  156 bits (394), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 63/315 (20%), Positives = 118/315 (37%), Gaps = 30/315 (9%)

Query: 17  RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76
           +HG   Y  RKG   R+       S F  A ++                K    +  LI 
Sbjct: 4   KHG-AYYLVRKGKWERL------GSDFQEALLA---------YAKIVGGKSNGGMSLLID 47

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF 136
           E   +     L+ N+   +E+   ++     +F+ R++  +H+ +       TP+ A + 
Sbjct: 48  EALDAMR-RRLSENTIKQYEAASVRLKTYLEEFEPRQVLPRHVAALKLHMSDTPNMANRV 106

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196
           ++ +R++F +A+ ++ V  NPC  + R   K    R  +  +     +  SE     + +
Sbjct: 107 ISFLRMVFAYALERQIVDSNPCTGIRRHAEKKR-DRYISDAEFAAICAASSEYMS--VIW 163

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA---MTP---I 250
           E    +G R SD     +  + +   + + QKTG  + V +      LL      P    
Sbjct: 164 EMCFLTGQRISDVLSIKLSDISDVGIAFEQQKTGAKLIVGMSPDLKALLDRVNALPRKVR 223

Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMA 309
           G   F   +  + ++     + F+A    AGV   + H +R  S T +   G  A     
Sbjct: 224 GATLFCARSGGKPVSYDTCKMGFRAACKAAGVKGATIHDLRAKSLTDTDRQGNNA---QM 280

Query: 310 TYGWKTVDQAETYTK 324
             G       + Y +
Sbjct: 281 LGGHTDAKMTKRYLR 295


>gi|262376987|ref|ZP_06070213.1| tyrosine recombinase XerD [Acinetobacter lwoffii SH145]
 gi|262308025|gb|EEY89162.1| tyrosine recombinase XerD [Acinetobacter lwoffii SH145]
          Length = 305

 Score =  156 bits (394), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 47/291 (16%), Positives = 104/291 (35%), Gaps = 19/291 (6%)

Query: 57  KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKI 114
           K+  I +P + P    +L   +R      +++ ++R ++ S   Q          ++   
Sbjct: 4   KKPRIPAPVQIPDAFSYL-QGFRDYLIAQTVSPHTRNAYLSDLVQCAECLSKPLPEWNHD 62

Query: 115 TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
               +   +  ++ +P S  + L+++R  +K+   Q+  + NP  + + PK      +  
Sbjct: 63  DISDVLIALTKQQKSPRSIARCLSALRSFYKFLREQKLRSDNPVAAHKTPKLGRALPKDL 122

Query: 175 TKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKT 229
           ++ D++            G + R  FE L   GLR ++     ++ +      ++   K 
Sbjct: 123 SEADVEALIHAPDINTALGLRDRAMFEVLYACGLRVTELINLRLELINLKQGYLRIVGKG 182

Query: 230 GTIITVELPDGFMKLL---------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280
                + +     + +          +     +  F+      M+   F    K  A +A
Sbjct: 183 NKERLIPMGQMACEWVEKYLNEARPQLYKTSTDYLFLTQHGGIMSRQNFWYAIKRYALQA 242

Query: 281 GV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           G+    S H +R   AT   + GA    +    G   +   + YT  A   
Sbjct: 243 GIQSELSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVR 293


>gi|330997435|ref|ZP_08321286.1| tyrosine recombinase XerD [Paraprevotella xylaniphila YIT 11841]
 gi|329570809|gb|EGG52525.1| tyrosine recombinase XerD [Paraprevotella xylaniphila YIT 11841]
          Length = 317

 Score =  156 bits (394), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 55/288 (19%), Positives = 104/288 (36%), Gaps = 25/288 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRKH-- 128
           L+  Y +       L+ N+  ++     +++    D   D+R ++   +   +       
Sbjct: 19  LLRRYYQYLKLERGLSENTLDAYTEDLRKLLDFFSDEELDFRAVSLDDLHQFMAELADVG 78

Query: 129 -TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS--- 184
            +P S  + L+ +R  +++   ++ +  +P   +E PK         T  ++        
Sbjct: 79  ISPRSMARILSGIRSFYRFLYVEKEIEQDPTELLESPKIGRRLPEVLTVAEIDAMIEGID 138

Query: 185 -FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGF- 241
               EG + R   E L   GLR S+ C   +  L      I+ +  G     V +     
Sbjct: 139 LSQPEGQRNRAILEMLYSCGLRVSELCGLRISDLFLEEGFIRVKGKGEKERLVPISGRAV 198

Query: 242 ---------MKLLAMTPIGKETFFIN-NDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289
                      L+ + P  ++  F++      ++      W K  A  AG+ K  S H  
Sbjct: 199 HELENWFLCRNLIRIKPGHEDFVFLSLRRGTALSRITIFYWVKELAVAAGIQKTISPHTF 258

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
           R   AT   + GA    + A  G +++   E YT   DR RL  +   
Sbjct: 259 RHSFATHLLEGGANLRVIQAMLGHESISTTEIYTH-IDRSRLRREIME 305


>gi|313123528|ref|YP_004033787.1| tyrosine recombinase xerd subunit [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
 gi|312280091|gb|ADQ60810.1| Tyrosine recombinase XerD subunit [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
          Length = 301

 Score =  156 bits (394), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 45/283 (15%), Positives = 105/283 (37%), Gaps = 24/283 (8%)

Query: 75  ISEYRK-SAHWGSLAVNSRISFESYFDQII-----RKSGDFDYRKITTKHIRSGVESRKH 128
           I++Y + S     L+ N+  ++     + +      +   +    +      +       
Sbjct: 11  INDYLRYSQIERGLSPNTIAAYHQDLLEFLAFVKEEQMPAWPLEAVEIDAFLAKERDLGK 70

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKS 184
             SS  + ++++   ++W VRQ+ +A++P   ++ PKR+       T+ ++    +Q   
Sbjct: 71  ANSSISRLVSTLSRFYQWLVRQQLIALDPMSQIDAPKREKRMPLALTEAEVGKLLEQPDL 130

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMK 243
               G + R   E L  +G+R S++    +  +  ++  IK   K      + +    + 
Sbjct: 131 TTDLGIRDRALVELLYATGMRVSEAVNLKLADVHADLQLIKVLGKGSKERLIPVSALALD 190

Query: 244 LLAM-TPIGK----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290
            +    P+            +  F+N+   ++         K    +AG+ K  + H +R
Sbjct: 191 WIKRYLPVRDQQLLKRGKSSDYLFLNSRGGQLTRQAVWQKIKKYCQQAGIAKDVTPHTLR 250

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
              AT   + GA    +    G   +   + YT    +  L +
Sbjct: 251 HSFATHLLEHGADLRVVQEILGHTDISTTQIYTNLTQKHILDV 293


>gi|188586285|ref|YP_001917830.1| tyrosine recombinase XerD subunit [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179350972|gb|ACB85242.1| tyrosine recombinase XerD subunit [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 295

 Score =  155 bits (393), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 46/268 (17%), Positives = 102/268 (38%), Gaps = 33/268 (12%)

Query: 85  GSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLT 138
             L+ N+  S+       +    + G   ++++   HI   +   K      ++  + + 
Sbjct: 16  RGLSENTLNSYLRDLKNFLEFLNQQGVTKWQEVKRTHIMKYLIFMKEKGKASATVTRNIA 75

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRL 194
           S+R  F++ +++  ++ NP   +E PK++ +     + +++ +  +       +G + + 
Sbjct: 76  SVRSFFQFLLQEGMISENPSTDLETPKQEKKLPEILSPQEVDKLLNQPDTTDFKGKRDKA 135

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVEL---------------P 238
             E L  +G+R S+     V+H+ +N   I    K      V L                
Sbjct: 136 MLEVLYATGMRVSELISLNVEHVDSNNGYILCKGKGDKERIVPLGKMAIKSVSDYISKSR 195

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATI 296
               K L      +   F+N+  ++++   F    K  A K G+ +  + H +R   AT 
Sbjct: 196 PQLRKNL-----SEPALFLNHHGKRLSRQGFWKILKKYAEKIGIKQKITPHTLRHSFATH 250

Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324
             + GA    +    G   +   + YT 
Sbjct: 251 LLENGADLRAVQEMLGHSDISTTQIYTH 278


>gi|147677545|ref|YP_001211760.1| site-specific recombinase XerD [Pelotomaculum thermopropionicum SI]
 gi|146273642|dbj|BAF59391.1| site-specific recombinase XerD [Pelotomaculum thermopropionicum SI]
          Length = 295

 Score =  155 bits (393), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 48/270 (17%), Positives = 104/270 (38%), Gaps = 24/270 (8%)

Query: 85  GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLT 138
             L+ N+ +S+ +   +      K+G     +     + + +        + ++  + L 
Sbjct: 16  RGLSENTLVSYRADLAKFISFCAKAGLKSVEQAGRDTVMAYLFQLQLDGRSTATISRHLA 75

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ----QFKSFWSEGSQPRL 194
           S+R  +++AV +  +  +P   +E PK   +  R  + E++     Q  S    G + + 
Sbjct: 76  SIRAFYRFAVGEGILPADPSSDLETPKPAQKLPRVLSVEEVDLLMGQPGSGEPAGLRDKA 135

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-ITVELPDGFMKLLA------- 246
             E L  +G+R S+     ++H+      ++    G+    + + D  ++ L        
Sbjct: 136 MLELLYATGMRVSELVSLNLEHVNLENGFVRCLGKGSRERIIPVGDVAVRWLKEYLERAR 195

Query: 247 ---MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301
                P   +  F+N   +++    F    K  A KA + K  + H +R   AT   + G
Sbjct: 196 YKLSKPGRTDALFVNQHGRRLTRQGFWKIIKKYARKAKIKKVITPHTLRHSFATHLLENG 255

Query: 302 ATAHELMATYGWKTVDQAETYTK-GADRIR 330
           A    +    G   +   + YT    +R+R
Sbjct: 256 ADLRSVQEMLGHADISTTQIYTHLTRNRLR 285


>gi|254481807|ref|ZP_05095050.1| tyrosine recombinase XerD [marine gamma proteobacterium HTCC2148]
 gi|214037936|gb|EEB78600.1| tyrosine recombinase XerD [marine gamma proteobacterium HTCC2148]
          Length = 298

 Score =  155 bits (393), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 49/268 (18%), Positives = 93/268 (34%), Gaps = 23/268 (8%)

Query: 85  GSLAVNSRISFESYFDQI------IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLT 138
             L+ N+  S+     Q        +KS      +   +        +  +  S  +F++
Sbjct: 19  KGLSDNTLSSYRRDLRQFNDWLAKSKKSSVISTDRAELQAYLGARLQQGQSQRSTARFMS 78

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRL 194
             R  +K+ +R+  + ++P L V+ PK      R  ++ D+ +             + R 
Sbjct: 79  CARGFYKYLLREGRLTVDPTLDVDSPKLGRPLPRSLSEGDVDKLLDAPDLDIALEYRDRT 138

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIG-- 251
             E L   GLR S+     +  +  N   ++   K      V + +  +  L     G  
Sbjct: 139 MLEMLYACGLRVSELTGLQINQISINQGVVRVFGKGSKERLVPMGEEALAWLQGYLAGPR 198

Query: 252 --------KETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAG 301
                    +  F +   ++M    F    K  A +AG+  N S H +R   AT   + G
Sbjct: 199 AELLKGIPSDVVFPSKRGRQMTRQTFWYRIKIYAKRAGIKQNLSPHTLRHAFATHLLNHG 258

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRI 329
           A    +    G   +   + YT  A + 
Sbjct: 259 ADLRVVQMLLGHSDLTTTQIYTHVAKQR 286


>gi|70726420|ref|YP_253334.1| site-specific recombinase [Staphylococcus haemolyticus JCSC1435]
 gi|82582338|sp|Q4L6J7|XERD_STAHJ RecName: Full=Tyrosine recombinase xerD
 gi|68447144|dbj|BAE04728.1| site-specific recombinase [Staphylococcus haemolyticus JCSC1435]
          Length = 295

 Score =  155 bits (393), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 51/277 (18%), Positives = 104/277 (37%), Gaps = 28/277 (10%)

Query: 74  LISEYRKSAH-WGSLAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVESRK 127
           +I EY K       L+ N+  ++     +       +K    D+  I  + I+  + S  
Sbjct: 4   IIEEYLKFIQIEKGLSENTIGAYRRDLKKYQLYMQEQKIAHIDF--IDRQTIQECLGSLI 61

Query: 128 HTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
              +SA    +F++++R   ++A+R++Y A +P + +E PK + +       E++ Q   
Sbjct: 62  DQGASAKSIARFISTIRSFHQFALREKYAAKDPTVLIETPKYEKKLPDVLDVEEVIQLLE 121

Query: 185 FWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPD 239
                   G + R   E L  +G+R ++  +  +  +   +  +K   K      + L D
Sbjct: 122 TPDLTKNNGYRDRTILELLYATGMRVTELIQIEIDDVNLIMGFVKVFGKGNKERIIPLGD 181

Query: 240 GFMKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AH 287
             ++ L                    F+N   + +         K    +A +NK+   H
Sbjct: 182 TVIEYLDTYINNVRSQLLKKTVTNVLFLNLHGRPLTRQGIWKLIKQYGLRANINKTLTPH 241

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            +R   AT   + GA    +    G   +   + YT 
Sbjct: 242 TLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTH 278


>gi|228476153|ref|ZP_04060861.1| tyrosine recombinase XerD [Staphylococcus hominis SK119]
 gi|314936376|ref|ZP_07843723.1| tyrosine recombinase XerD [Staphylococcus hominis subsp. hominis
           C80]
 gi|228269976|gb|EEK11456.1| tyrosine recombinase XerD [Staphylococcus hominis SK119]
 gi|313654995|gb|EFS18740.1| tyrosine recombinase XerD [Staphylococcus hominis subsp. hominis
           C80]
          Length = 295

 Score =  155 bits (392), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 43/263 (16%), Positives = 94/263 (35%), Gaps = 23/263 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKIT------TKHIRSGVESRKHTPSSAIQFLT 138
             L+ N+  ++     +      +     I        +     +  +  +  S  +F++
Sbjct: 16  KGLSDNTIGAYRRDLAKYEEYMKEHKIAHIDFIDRQVIQECLGYLIDQGASAKSMARFIS 75

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRL 194
           ++R   ++A+R++Y A +P + +E PK + +       E++ Q           G + R 
Sbjct: 76  TIRNFHQFALREKYAAKDPTVLIETPKYEKKLPDVLEVEEVLQLLETPDLNKKNGYRDRT 135

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM------ 247
             E L  +G+R S+  +  ++ +   +  ++   K      + L D  ++ L        
Sbjct: 136 ILELLYATGMRVSELIQINIEDINLIMGFVRVFGKGNKERIIPLGDTVIEFLDTYLEKVR 195

Query: 248 ----TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAG 301
                       F+N   + +         K    KA +NK+   H +R   AT   + G
Sbjct: 196 PQLLKKTITNVLFLNMHGRPLTRQGIWKMIKQYGLKANINKTLTPHTLRHSFATHLLENG 255

Query: 302 ATAHELMATYGWKTVDQAETYTK 324
           A    +    G   +   + YT 
Sbjct: 256 ADLRAVQEMLGHSDISTTQLYTH 278


>gi|323489648|ref|ZP_08094875.1| tyrosine recombinase xerD [Planococcus donghaensis MPA1U2]
 gi|323396779|gb|EGA89598.1| tyrosine recombinase xerD [Planococcus donghaensis MPA1U2]
          Length = 300

 Score =  155 bits (392), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 53/272 (19%), Positives = 103/272 (37%), Gaps = 26/272 (9%)

Query: 85  GSLAVNSRISFES----YFDQIIRKSGDFDYRKITTKHIRSGVESRKHT---PSSAIQFL 137
             LA N+  S+E     Y   +         +K+   HI + +   K T   P +  + +
Sbjct: 19  RQLADNTLSSYERDLKVYLQYLKEVEQLESLKKVERVHILNHLRHLKETTKTPRTVARHI 78

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPR 193
           +S+R   ++ +R+  V  +P + +E P+   +     + E++       +     G + +
Sbjct: 79  SSIRSFHQFMIRERIVETDPTVHLEMPQMDKKLPNILSIEEVDALIQVPATNKANGLRDQ 138

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKL-------- 244
              E L  SG+R S+     ++ +   +  ++ T K G    + L    +          
Sbjct: 139 AMLELLYASGMRVSECINLDIEDVHLTMGFVRCTGKGGKERIIPLGKSALTSCQTYLEQG 198

Query: 245 ---LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
              L  +    +  FIN   +++    F    K  A KAG+ K  + H +R   AT   +
Sbjct: 199 RIDLVKSGEKTDALFINQRGKRLTRQGFWKLLKQHAQKAGIQKELTPHTLRHSFATHLLE 258

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            GA    +    G   +   + YT    + RL
Sbjct: 259 NGADIRAVQEMLGHADISTTQIYTH-VSKTRL 289


>gi|239636836|ref|ZP_04677835.1| tyrosine recombinase XerD [Staphylococcus warneri L37603]
 gi|239597510|gb|EEQ80008.1| tyrosine recombinase XerD [Staphylococcus warneri L37603]
          Length = 295

 Score =  155 bits (392), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 49/275 (17%), Positives = 101/275 (36%), Gaps = 24/275 (8%)

Query: 74  LISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE------SR 126
           +I EY K       L+VN+  ++    ++            I     ++  E       +
Sbjct: 4   IIEEYLKFIQIEKGLSVNTIGAYRRDLNKYKEYLDLQKISNIDFVDRQTIQECLGYLIDQ 63

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             +  S  +F++++R   ++A+R++Y A +P + +E PK + +       +++    +  
Sbjct: 64  GQSSKSIARFISTIRSFHQFALREKYAAKDPTVLIETPKYEKKLPDVLEVDEVIDLLNAP 123

Query: 187 SE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241
                 G + R   E L  +G+R S+  +  V+ +   +  ++   K      V L D  
Sbjct: 124 DLNKNNGYRDRTMLELLYATGMRVSEVIQIEVEDVNLMMGFVRVFGKGDKERIVPLSDTV 183

Query: 242 MKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289
           +  L                    F+N   + ++        K    KA +NK+   H +
Sbjct: 184 IDYLTTYIETVRPQLLKQTVTNVLFLNMHGKPLSRQGIWKMMKQNGLKANINKTLTPHTL 243

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           R   AT   + GA    +    G   +   + YT 
Sbjct: 244 RHSFATHLLENGADLRAVQEMLGHSDISTTQLYTH 278


>gi|304382767|ref|ZP_07365251.1| tyrosine recombinase XerD [Prevotella marshii DSM 16973]
 gi|304336086|gb|EFM02332.1| tyrosine recombinase XerD [Prevotella marshii DSM 16973]
          Length = 315

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 47/274 (17%), Positives = 103/274 (37%), Gaps = 23/274 (8%)

Query: 74  LISEYRKSAHWG-SLAVNSRISFESYFDQII---RKSGDFD--YRKITTKHIRSGVESRK 127
           ++  Y +      + + N+  ++    ++++   ++ G      +    +H  + +    
Sbjct: 11  MVKAYLRYLKLQRNYSGNTLEAYRRDLNRLLVYLKQEGLTPTEVKLEHLQHFSAQLYDCG 70

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186
               S  + L+ +R  +++     Y+  +P   +E P+  T      + E++ + ++   
Sbjct: 71  IGARSQARVLSGVRSFYRFLQLDGYMESDPSELLESPQIGTHLPEVLSTEEVDRLENSLD 130

Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF- 241
               EG + R   E L   GLR ++     + +L  +   I+   K      V +     
Sbjct: 131 LSKPEGQRNRAIIEVLFSCGLRVTELVSLRLSNLYLDEGFIRVLGKGRKERFVPISPRAI 190

Query: 242 ---------MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290
                       L +    ++  F+N     +  T   I  K +AT+AG+ K  S H +R
Sbjct: 191 KELKLWFYDRNELKIRAGEEDYVFLNRRGVHLTRTMILIMIKRQATEAGIQKTISPHTLR 250

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              AT   + GA    +    G +++   E YT 
Sbjct: 251 HSFATALLEGGADLRAIQVMLGHESISTTEIYTH 284


>gi|28871200|ref|NP_793819.1| site-specific recombinase, phage integrase family [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|28854450|gb|AAO57514.1| site-specific recombinase, phage integrase family [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 325

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 65/325 (20%), Positives = 121/325 (37%), Gaps = 33/325 (10%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
           LPP +     +HG   Y  RKG   R+       S F  A ++                K
Sbjct: 10  LPPCMY---LKHG-AYYLVRKGKWERL------GSDFQEALLA---------YAKIVGGK 50

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
               +  LI E   +     L+ N+   +E+   ++     +F+ R++  +H+ +     
Sbjct: 51  SNGGMSLLIDEALDAMR-RRLSENTIKQYEAASVRLKTYLEEFEPRQVLPRHVAALKLHM 109

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             TP+ A + ++ +R++F +A+ ++ V  NPC  + R   K    R  +  +     +  
Sbjct: 110 ADTPNMANRVISFLRMVFAYALERQIVDSNPCTGIRRHAEKKR-DRYISDAEFAAICAAS 168

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
           SE     + +E    +G R SD     +  + +   + + QKTG  + V +      LL 
Sbjct: 169 SEYMS--VIWEMCFLTGQRISDVLNIKLSDISDVGIAFEQQKTGAKLIVAMSPDLKALLD 226

Query: 247 MTP------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISAD 299
                     G   F   +  + ++     + F+A    AGV   + H +R  S T +  
Sbjct: 227 RVHALPRKVRGATLFCARSGGKPVSYDTCKMGFRAACKAAGVKGATIHDLRAKSLTDTDR 286

Query: 300 AGATAHELMATYGWKTVDQAETYTK 324
            G  A       G       + Y +
Sbjct: 287 QGNNA---QMLGGHTDAKMTKRYLR 308


>gi|220929173|ref|YP_002506082.1| tyrosine recombinase XerD [Clostridium cellulolyticum H10]
 gi|219999501|gb|ACL76102.1| tyrosine recombinase XerD [Clostridium cellulolyticum H10]
          Length = 294

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 41/267 (15%), Positives = 99/267 (37%), Gaps = 22/267 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKI------TTKHIRSGVESRKHTPSSAIQFLT 138
             L++N+  S++   +Q I    + +   I      T       ++ +    S+  + L 
Sbjct: 16  KRLSLNTLQSYKRDIEQYITYLKEINVTNIVNTNKTTVIAYLLHLQKKGRATSTISRNLA 75

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRL 194
           S+R  +++  + + +  +P   +E PK + +  +  + ++++           +G + + 
Sbjct: 76  SIRSFYQFLYKDKVIDNDPTSELESPKVEKKLPQILSTQEVELLLDQPKCLDLKGIRDKA 135

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL--------PDGFMKLLA 246
             E L  +G+R S+     +  +  ++  IK  K     T+ +         +   K   
Sbjct: 136 MLELLYATGIRVSELISLNLDDINFDLGLIKCNKGTRERTIPIGSISTAAVHEYLEKSRN 195

Query: 247 MTPIGKE--TFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302
                 +    F+N + +++    F    K    +A +NK  + H +R   A    + GA
Sbjct: 196 FLIQDSQEIALFVNVNGKRLTRQGFWKIIKHYKNQAKINKDITPHTLRHSFAAHLLENGA 255

Query: 303 TAHELMATYGWKTVDQAETYTKGADRI 329
               +    G   +   + Y + A   
Sbjct: 256 DLRSIQEMLGHSDISSTQIYAQIAKNK 282


>gi|326202104|ref|ZP_08191974.1| tyrosine recombinase XerD [Clostridium papyrosolvens DSM 2782]
 gi|325987899|gb|EGD48725.1| tyrosine recombinase XerD [Clostridium papyrosolvens DSM 2782]
          Length = 294

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 40/267 (14%), Positives = 98/267 (36%), Gaps = 22/267 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKI------TTKHIRSGVESRKHTPSSAIQFLT 138
             L++N+  S++   +Q I    + +   I      T       ++ +    S+  + L 
Sbjct: 16  KRLSLNTLQSYKRDIEQYITYLKEINVTNIANTNKTTVIAYLLHLQKKGRATSTISRNLA 75

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRL 194
           S+R  +++  + + +  +P   +E PK + +  +  + ++++           +G + + 
Sbjct: 76  SIRSFYQFLYKDKVIDNDPTSELESPKVEKKLPQILSTQEVELLLEQPKCLDLKGIRDKA 135

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL--------PDGFMKLLA 246
             E L  +G+R S+     +  +   +  I+  K     T+ +         +   K   
Sbjct: 136 MLELLYATGIRVSELISLNLDDINFELGFIRCNKGTRERTIPIGSISMAAVHEYLDKSRN 195

Query: 247 MTPIGKE--TFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302
                 +    F+N + +++    F    K    +A +NK  + H +R   A    + GA
Sbjct: 196 FLIQDSQETALFVNVNGKRLTRQGFWKIIKHYKNQAKINKDITPHTLRHSFAAHLLENGA 255

Query: 303 TAHELMATYGWKTVDQAETYTKGADRI 329
               +    G   +   + Y + A   
Sbjct: 256 DLRSIQEMLGHSDISSTQIYAQIAKNK 282


>gi|260910520|ref|ZP_05917188.1| integrase/recombinase XerD [Prevotella sp. oral taxon 472 str.
           F0295]
 gi|260635362|gb|EEX53384.1| integrase/recombinase XerD [Prevotella sp. oral taxon 472 str.
           F0295]
          Length = 304

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 104/278 (37%), Gaps = 23/278 (8%)

Query: 70  TLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRK---SGDF--DYRKITTKHIRSGV 123
           T+  ++  Y +      +L+ N+  ++ +    ++      G      +     +  + +
Sbjct: 7   TVDNMVKAYMRYLKLERNLSQNTIEAYRNDLRWLLAYVNYHGLKVEAVKLEDLDNFSASL 66

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
             ++ TP S  + L+ +R  FK+ +   ++  +P   +  P  +       +  ++ + +
Sbjct: 67  HDQRITPRSQARILSGVRSFFKFLLLDGFIDADPTELLVSPHVRNALPDVLSTAEVDRLE 126

Query: 184 SFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVEL- 237
           +       EG + R   E L   GLR S+     + +L      ++ T K      V + 
Sbjct: 127 ASIDLSKWEGQRNRAIIEVLFSCGLRVSELVNLKLSNLYVEEKFVRVTGKGDKERLVPIS 186

Query: 238 ---PDGF------MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286
               D           + + P  ++  F+N     +  T   I  K +A  AG+ K  S 
Sbjct: 187 SRALDELNAWFADRNAMRIKPGEEDYVFLNRRGAHLTRTMILIMIKRQAVAAGITKTISP 246

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           H +R   AT   + GA    + A  G + +   E YT 
Sbjct: 247 HTLRHSFATALLEGGADLIAIQAMMGHEDIATTEIYTH 284


>gi|300725867|ref|ZP_07059331.1| tyrosine recombinase XerD [Prevotella bryantii B14]
 gi|299776855|gb|EFI73401.1| tyrosine recombinase XerD [Prevotella bryantii B14]
          Length = 304

 Score =  154 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 47/277 (16%), Positives = 99/277 (35%), Gaps = 24/277 (8%)

Query: 86  SLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVESRKHTPSSAIQFLTSM 140
           + + N+  ++      ++    +      D +    +   + +  +     S  + L+ +
Sbjct: 24  NYSANTLEAYRHDIRYLLEFFEEHQQNPIDAKLEDLELFATSIHEKGIGARSQARILSGV 83

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLAF 196
           R  +++   + Y+  +P   +E P          T E++ + ++       EG + +   
Sbjct: 84  RSFYRFLQLEGYIKDDPTELLESPHLGEHLPTYLTTEEVDRLEASIDLSKWEGQRNKAII 143

Query: 197 EFLLYSGLRCSDSCRAGVQH-LQNNIFSIKTQKTGTIITVELPDGF----------MKLL 245
           E L   GLR S+     + +   +  F     K      V + +              L+
Sbjct: 144 EVLFSCGLRVSELVNLKISNCFMDEKFVRVLGKGSKERLVPISENAIREVNYWLMDRNLM 203

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGAT 303
            + P  ++  F+N     +  T   I  K +A  AG+ K  S H +R   AT     GA 
Sbjct: 204 VIKPGEEDYLFLNRRGSHLTRTMILIMIKRQAVAAGITKIISPHTLRHSFATALLKGGAD 263

Query: 304 AHELMATYGWKTVDQAETYTK--GADRIRLGIKNSRR 338
              +    G + +   E YT    +D  R  +++  R
Sbjct: 264 LRAIQVMLGHEDIGTTEIYTHMETSDLKREILEHHPR 300


>gi|325684289|gb|EGD26462.1| integrase/recombinase XerD [Lactobacillus delbrueckii subsp. lactis
           DSM 20072]
          Length = 301

 Score =  154 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 45/283 (15%), Positives = 105/283 (37%), Gaps = 24/283 (8%)

Query: 75  ISEYRK-SAHWGSLAVNSRISFESYFDQII-----RKSGDFDYRKITTKHIRSGVESRKH 128
           I++Y + S     L+ N+  ++     + +      +   +    +      +       
Sbjct: 11  INDYLRYSQIERGLSPNTIAAYHQDLLEFLAFVKEEQMPAWPLEAVEIDAFLAKERDLGK 70

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKS 184
             SS  + ++++   ++W VRQ+ +A++P   ++ PKR+       T+ ++    +Q   
Sbjct: 71  ANSSISRLVSTLSRFYQWLVRQQLIALDPMSQIDAPKREKRMPLALTEAEVGKLLEQPDL 130

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMK 243
               G + R   E L  +G+R S++    +  +  ++  IK   K      + +    + 
Sbjct: 131 TTDLGIRDRALVELLYATGIRVSEAVNLKLADVHADLQLIKVLGKGNKERLIPVSALALD 190

Query: 244 LLAM-TPIGK----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290
            +    P+            +  F+N+   ++         K    +AG+ K  + H +R
Sbjct: 191 WIKRYLPVRDQQLLKRGKSSDYLFLNSRGGQLTRQAVWQKIKKYCQQAGIAKDVTPHTLR 250

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
              AT   + GA    +    G   +   + YT    +  L +
Sbjct: 251 HSFATHLLEHGADLRVVQEILGHTDISTTQIYTNLTQKHILDV 293


>gi|326572192|gb|EGE22188.1| tyrosine recombinase XerD [Moraxella catarrhalis BC7]
          Length = 307

 Score =  154 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 53/274 (19%), Positives = 98/274 (35%), Gaps = 23/274 (8%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---TP 130
            +SE+R +     L++ +R ++     ++  +  D          +R+ +   K    + 
Sbjct: 21  YLSEFRAAMLARGLSIATRNAYSQDV-RLCIRLSDMPVNLWQPSDVRNHLMCLKDAKKSE 79

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-- 188
            S  + L S+   F W +   Y   NPC S++ PK      +  +++++           
Sbjct: 80  RSIARVLASLCQFFLWQIESGYREDNPCESIKTPKLGKTLPKTLSEQEVSSLLDAPDISS 139

Query: 189 --GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKL 244
             G + +   E L   GLR S+     ++HL       S+ T K   +  + L +  +  
Sbjct: 140 VRGLRDKAMLEVLYACGLRVSELTSLSLEHLNLTAGWLSV-TGKGNKMRLIPLGEYALSA 198

Query: 245 LA----------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292
           L           +     +  F+      M    F    K  A  AG+N   S H +R  
Sbjct: 199 LNEYLAVRGSLLIGKKDCQAVFLTEQGGYMTRHNFWHLIKKYALMAGINTAISPHTLRHA 258

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            AT   + GA    +    G   +   + YT  A
Sbjct: 259 FATHLVNHGADLRSVQLLLGHSDLSTTQIYTHVA 292


>gi|81428639|ref|YP_395639.1| site-specific DNA tyrosine recombinase, XerD [Lactobacillus sakei
           subsp. sakei 23K]
 gi|78610281|emb|CAI55330.1| Site-specific DNA tyrosine recombinase, XerD [Lactobacillus sakei
           subsp. sakei 23K]
          Length = 294

 Score =  154 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 47/276 (17%), Positives = 95/276 (34%), Gaps = 23/276 (8%)

Query: 72  KWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR-----SGVES 125
             LI +Y         L+ N+R S+     Q  +          T              +
Sbjct: 2   DDLIQDYLHYLKIERGLSENTRQSYRQDLKQYQQFLVSQKLTSFTEDRFIVLGFLQAQTT 61

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
            +   SS  + ++++R  +++  R+  +  +P L ++ PK+        + E++++    
Sbjct: 62  AQKAQSSITRSISTLRKFYQYLAREGRIQKDPMLQIDSPKQGRHLPAVLSSEEIERLLKT 121

Query: 186 ----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240
                  G + R   E L  +GLR S+     +  L  ++  I+T  K      + + D 
Sbjct: 122 PDTSTPLGLRDRAILEVLYATGLRVSELVHLKLTDLHLSLGLIQTLGKGDKERIIPIGDV 181

Query: 241 FMKLLA----------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288
            +  +                    F+N     +         KA    AG++K  + H 
Sbjct: 182 AVDWINQYLERSRNRLTKGKDSPYLFVNFHGNGLTRQGIWKNLKAIVQAAGIDKDVTPHT 241

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +R   AT+  + GA    +    G   +   + YT 
Sbjct: 242 LRHSFATVLLENGADLRIVQELLGHSDISTTQIYTH 277


>gi|88706916|ref|ZP_01104615.1| Tyrosine recombinase xerD [Congregibacter litoralis KT71]
 gi|88698838|gb|EAQ95958.1| Tyrosine recombinase xerD [Congregibacter litoralis KT71]
          Length = 302

 Score =  154 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 54/288 (18%), Positives = 104/288 (36%), Gaps = 26/288 (9%)

Query: 74  LISEYRKSAHW--GSLAVNSRISFESYFDQ-----IIRKSGDFDYRKITTKHIRSGVESR 126
           L+  Y   A W    L+ N+  ++           + R+       +   +   + +  +
Sbjct: 12  LLESYL-DAVWMEKGLSENTLAAYRRDLQAFARWALSRQRTATQIERSDIEAYLASLLEK 70

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185
           K +P SA + L+ +R  +++ +R   +  +P L ++ P+      +  ++ D+       
Sbjct: 71  KSSPRSAARALSCLRGFYRYLLRSGQLDTDPTLGLDSPRLGRPLPKTLSEVDVDALLKAP 130

Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGF 241
                 G + R   E L   GLR S+     +  L  N   ++   K G    V + +  
Sbjct: 131 KLDDPIGFRDRCMLELLYACGLRVSELTGLTLSQLSLNQGVLRIVGKGGKERLVPIGEEA 190

Query: 242 MKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289
           +  L                 +  F +   ++M    F    K  A  AG+ K  S H +
Sbjct: 191 LHWLQRFLRDVRPELLGETSSDVLFPSRRAREMTRQTFWHRIKQHAMTAGIRKPISPHVL 250

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
           R   AT   + GA    +    G   +   + YT  A R RL   +++
Sbjct: 251 RHAFATHLVNHGADLRVVQLLLGHSDLSTTQIYTHVA-RQRLQSLHAK 297


>gi|217963893|ref|YP_002349571.1| tyrosine recombinase XerD [Listeria monocytogenes HCC23]
 gi|290892115|ref|ZP_06555111.1| integrase/recombinase XerD [Listeria monocytogenes FSL J2-071]
 gi|217333163|gb|ACK38957.1| tyrosine recombinase XerD [Listeria monocytogenes HCC23]
 gi|290558238|gb|EFD91756.1| integrase/recombinase XerD [Listeria monocytogenes FSL J2-071]
 gi|307571537|emb|CAR84716.1| integrase/recombinase [Listeria monocytogenes L99]
          Length = 297

 Score =  154 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 50/288 (17%), Positives = 105/288 (36%), Gaps = 33/288 (11%)

Query: 73  WLISEYRKSAHW----GSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVE 124
            LI ++    H+      L+ N+  ++E      +       G  D   +    I   + 
Sbjct: 3   DLIEDFL---HFLIVERGLSANTIKAYERDLRYFVSYMDVAKGLTDPNTLERSDIVGFMA 59

Query: 125 ---SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
                  +P S  +++ S+R  F + +    ++ +P + +E PK+     +    +D+++
Sbjct: 60  FARQEGKSPRSVARYIASLRSFFHYLMHDGKMSHDPMIQIETPKQAQGLPKVLNLDDVEK 119

Query: 182 FK----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE 236
                 +    G + +   E L  +GLR ++     +  L  ++  I+T  K      + 
Sbjct: 120 LLSSSDTSTPLGLRDQAMMEILYATGLRVTELVSLKMDDLHLHMGFIQTIGKGDKERIIP 179

Query: 237 L-----------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284
           L            +     L       +  F+N+  Q +    F    K  A ++G+ K 
Sbjct: 180 LGKTATTVLEKYLEEARPKLRRPKYRNDFVFLNHHGQGLTRQGFWKILKGIAKESGIEKP 239

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            + H +R   AT   + GA    +    G   +   + YT    ++RL
Sbjct: 240 ITPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTH-VTKLRL 286


>gi|114331692|ref|YP_747914.1| tyrosine recombinase XerD [Nitrosomonas eutropha C91]
 gi|114308706|gb|ABI59949.1| tyrosine recombinase XerD [Nitrosomonas eutropha C91]
          Length = 305

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 52/277 (18%), Positives = 102/277 (36%), Gaps = 26/277 (9%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDF--------DYRKITTKHIRSGVESRKHTPSSAIQFL 137
            L+ N+  S+ +   Q++              D  +       S   ++    S+A + L
Sbjct: 23  GLSRNTLASYRADLMQLVEWLSRREQTNGLLNDVTQADLLAFLSDRIAQGAKASTASRAL 82

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPR 193
             +R  +++ +RQ  + I+P ++++ PK          + +++   +        G + R
Sbjct: 83  ACIRRFYRYLLRQGKILIDPAVNIDSPKVSRHLPVSLAESEVEALLAVSDIKQPLGLRDR 142

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDG--------FMKL 244
              E L  +GLR S+     +  ++ ++  ++   K      + L D           + 
Sbjct: 143 AMLEILYAAGLRVSELVSLAISQVRQDMGVVRILGKGNKERLIPLGDEALYWLDLYLREA 202

Query: 245 LAMTPIGKE--TFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
             +   GK     F+      M    F    K  A +AG+ K  S H +R   AT   + 
Sbjct: 203 RPILLAGKHSNMLFVTTRGDAMTRQAFWYLIKRHARQAGIVKQLSPHTLRHAFATHLLNH 262

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
           GA    +    G   +   + YT  A R RL   ++R
Sbjct: 263 GADLRVVQLLLGHSDISTTQIYTHVA-RERLRQLHAR 298


>gi|295426297|ref|ZP_06818957.1| tyrosine recombinase XerD [Lactobacillus amylolyticus DSM 11664]
 gi|295064036|gb|EFG54984.1| tyrosine recombinase XerD [Lactobacillus amylolyticus DSM 11664]
          Length = 299

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 49/284 (17%), Positives = 101/284 (35%), Gaps = 25/284 (8%)

Query: 75  ISEYRKSAH-WGSLAVNSRISFESYFDQII-----RKSGDFDYRKITTKHIRSGVESRKH 128
           I +Y +       L+ N+  ++     + +      K   +    +      +  +    
Sbjct: 8   IEDYLRFGQIERGLSENTITAYRQDLTEFLNFLQQEKIDSWPTEAVEIDAFLARQKDLNK 67

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-- 186
             SS  + ++S+R  ++W  RQ    +NP + ++ PK++       T+++M +  +    
Sbjct: 68  ASSSISRMISSLRKFYQWLARQNIQKLNPMIEIDSPKKQRRLPVALTQDEMDRLLAAPNV 127

Query: 187 --SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVEL----PD 239
               G + R   E +  +G+R S+     ++ +  ++  IK   K      V +     D
Sbjct: 128 EKKLGLRDRALLEMMYATGMRVSEVINLQLEDVHPDLKLIKVFGKGSKERLVPVSNIALD 187

Query: 240 GFMK--------LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289
              K        L+       E  F+NN    +         K     A +NK  + H +
Sbjct: 188 WLAKYEKEVRESLVLKQGRNTEFVFLNNRGGSLTRQAVWQIIKHYCQLANINKDVTPHTL 247

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           R   AT   + GA    +    G   +   + YT    +  L +
Sbjct: 248 RHTFATHLLENGADLRVVQEILGHSDISTTQIYTNLTQKHILEV 291


>gi|49085926|gb|AAT51315.1| PA3738 [synthetic construct]
          Length = 299

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 55/288 (19%), Positives = 101/288 (35%), Gaps = 26/288 (9%)

Query: 74  LISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFDYR-----KITTKHIRSGVESR 126
           LI  +   A W    LA N+R ++ +   Q          R     +       +    +
Sbjct: 8   LIDRFL-DALWLEKGLADNTREAYRNDLQQFNAWLDGRGLRLEGIGRDAILDHLAWRLEQ 66

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185
            +   S  +FL+ +R  +++ +R   +A +P L V+ P+      +  ++ D++   +  
Sbjct: 67  GYKARSTARFLSGLRGFYRYCLRDGLIAEDPTLQVDLPQLGKPLPKSLSEADVEALLAAP 126

Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241
                 G + R   E L   GLR S+     ++ +      +K   K      V L +  
Sbjct: 127 EVDDPLGLRDRTMLEVLYACGLRVSELVGLTLEQVNLRQGVVKVFGKGSKERLVPLGEEA 186

Query: 242 MKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289
           +  L                 +  F +   ++M    F    K  A  A +  S   H +
Sbjct: 187 IGWLERYLREARGDLLGGRPSDVLFPSLRGEQMTRQTFWHRIKHHAQVAAIGTSISPHTL 246

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
           R   AT   + GA    +    G   +   + YT  A R RL   ++R
Sbjct: 247 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHIA-RARLQDLHAR 293


>gi|330686041|gb|EGG97664.1| tyrosine recombinase XerD [Staphylococcus epidermidis VCU121]
          Length = 295

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 49/275 (17%), Positives = 102/275 (37%), Gaps = 24/275 (8%)

Query: 74  LISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE------SR 126
           +I EY K       L+VN+  ++    ++            I     ++  E       +
Sbjct: 4   IIEEYLKFIQIEKGLSVNTIGAYRRDLNKYKEYLTLQKISNIDFVDRQTIQECLGYLIDQ 63

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             +  S  +F++++R   ++A+R++Y A +P + +E PK + +       +++ +  +  
Sbjct: 64  GQSSKSIARFISTIRSFHQFALREKYAAKDPTVLIETPKYEKKLPDVLEVDEVIELLNAP 123

Query: 187 SE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241
                 G + R   E L  +G+R S+  +  V+ +   +  ++   K      V L D  
Sbjct: 124 DLNKNNGYRDRTMLELLYATGMRVSEVIQIEVEDVNLMMGFVRVFGKGDKERIVPLGDTV 183

Query: 242 MKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289
           +  L                    F+N   + ++        K    KA +NK+   H +
Sbjct: 184 IDYLTTYIETVRPQLLKQTVTNVLFLNMHGKPLSRQGIWKMIKQNGLKANINKTLTPHTL 243

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           R   AT   + GA    +    G   +   + YT 
Sbjct: 244 RHSFATHLLENGADLRAVQEMLGHSDISTTQLYTH 278


>gi|116491033|ref|YP_810577.1| tyrosine recombinase XerD subunit [Oenococcus oeni PSU-1]
 gi|290890513|ref|ZP_06553588.1| hypothetical protein AWRIB429_0978 [Oenococcus oeni AWRIB429]
 gi|116091758|gb|ABJ56912.1| tyrosine recombinase XerD subunit [Oenococcus oeni PSU-1]
 gi|290479909|gb|EFD88558.1| hypothetical protein AWRIB429_0978 [Oenococcus oeni AWRIB429]
          Length = 302

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 55/286 (19%), Positives = 109/286 (38%), Gaps = 25/286 (8%)

Query: 67  KPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGV 123
           K    + ++ +Y +       L  NS  S++    +        +    K+    I   +
Sbjct: 4   KKNQFENVLLDYTRYLRTEQGLLENSIKSYKQDLSEFGAYIQKENILLVKVDRFTILDWL 63

Query: 124 ESRKHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
              +++  S       ++S+R  F +    + + I+P L V  PK+ +   +  T  +++
Sbjct: 64  NYLQNSGKSNNSIVHMVSSLRKFFAYLSDDQQIQIDPMLKVTTPKKNSHLPQVLTATEIE 123

Query: 181 QFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
              +        G + R   E +  +G R S+ C   +  L + +  I T   G    + 
Sbjct: 124 AVLAVPDISTTLGLRNRALLETMYATGFRVSEICNLKLADLHDELGLITTIGKGQKQRI- 182

Query: 237 LPDGFMKLLAMTPIGKET------------FFINNDKQKMNATQFSIWFKAKATKAGVNK 284
           +P G M LL ++   KE+             F+N+   +++        K  A KAG++K
Sbjct: 183 VPIGEMSLLYISKYFKESRPILLKDKESPYLFLNDHGHRISRQGIFKLVKEIAIKAGIDK 242

Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
             S H +R   AT   + GA    +    G   +   + YT  + +
Sbjct: 243 DISPHTLRHSFATNLLENGADLRIVQELLGHSDISTTQIYTHVSQK 288


>gi|254429866|ref|ZP_05043573.1| tyrosine recombinase XerD [Alcanivorax sp. DG881]
 gi|196196035|gb|EDX90994.1| tyrosine recombinase XerD [Alcanivorax sp. DG881]
          Length = 312

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 51/284 (17%), Positives = 97/284 (34%), Gaps = 30/284 (10%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR-----SGVESR 126
            WL  ++ +      L+ +S  ++     Q+           +  +  +     +    +
Sbjct: 19  SWLDQQWLE----KGLSEHSLSNYRRDISQLAVWLQHQQATLLACERYQLLEFLAARHQQ 74

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185
             +  S  + L++++  ++W  R+  +A +P L +ERPK      +  ++ D++   +  
Sbjct: 75  GLSARSVARQLSAVKSFYRWLKREGRIAEDPALLIERPKLGRPLPKTLSEADVEALLAAP 134

Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241
                 G + R   E L  +GLR ++        +      I+   K      V L +  
Sbjct: 135 DLSTPLGLRDRAMLEVLYATGLRVTELVTLTQSQINPRQGLIRVIGKGDKERLVPLGEEA 194

Query: 242 MKLLAMTPIGK--------------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--S 285
           +  LA                    E  F +     M    F    K  A  AGV K  S
Sbjct: 195 LHWLARYAQEGRPQLLAADQQGGNQELLFPSRRGTCMTRQTFWHRIKQLAVVAGVQKKLS 254

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            H +R   AT   + GA    +    G   +   + YT  A + 
Sbjct: 255 PHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAQQR 298


>gi|329894263|ref|ZP_08270149.1| Site-specific recombinase XerD [gamma proteobacterium IMCC3088]
 gi|328923194|gb|EGG30516.1| Site-specific recombinase XerD [gamma proteobacterium IMCC3088]
          Length = 298

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 49/284 (17%), Positives = 96/284 (33%), Gaps = 18/284 (6%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
           +  L  E   S +  S        ++++ D+ +             +        +  +P
Sbjct: 11  IDALWMERGLSDNSLSAYRTDLAHYQAWLDKAVAGRQLRQADGADLQRYLGLRLKQGRSP 70

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---- 186
            S  + L+ +R  +++A+RQ +   +P   VE PK      +  +++D+    S      
Sbjct: 71  RSTARLLSCLRSFYRYALRQNWCVTDPTADVESPKMGRALPKSLSEQDVDALLSAPNVES 130

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLL 245
               + +   E L   GLR S+       ++  N   ++   K      V + +  +  L
Sbjct: 131 PIELRDKAMLELLYACGLRVSELVGLTQLNISVNQGVVRVLGKGSKERLVPMGEEALDWL 190

Query: 246 AMTPIGKETFFINN----------DKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFS 293
                      +              Q M    F    K  A +AG+    S H +R   
Sbjct: 191 TRYLREGRPLIVEKKANDWLFPSIRGQGMTRQTFWHRIKLYAKRAGIKAPLSPHTLRHAF 250

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
           AT   + GA    +    G   +   + YT  A + RL   +++
Sbjct: 251 ATHLLNHGADLRVVQMLLGHSDLTTTQIYTHVAQQ-RLQDLHAK 293


>gi|51892959|ref|YP_075650.1| recombinase [Symbiobacterium thermophilum IAM 14863]
 gi|51856648|dbj|BAD40806.1| recombinase [Symbiobacterium thermophilum IAM 14863]
          Length = 294

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 50/276 (18%), Positives = 105/276 (38%), Gaps = 25/276 (9%)

Query: 73  WLISEY--RKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVE---S 125
            LI E+    S     LA N+  S+     Q  +  G+   D   ++   I + +     
Sbjct: 3   NLIHEFINYLSVE-RGLATNTLESYGRDLRQYYQYLGEDQVDLDAVSRSTIINYLMYLQK 61

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +    ++  + L +++  +++ VR++ +  +P  ++E PK +    R  T  ++++  + 
Sbjct: 62  QGKATATIARRLAALKAFYQFLVREKRIKTDPTANLESPKLEKRLPRVLTVSEVERLLAQ 121

Query: 186 ----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDG 240
                  G + R   E L  +G+R S+     ++ +      I+ T K      V L   
Sbjct: 122 PDPSLPAGLRDRAMLELLYATGIRVSELVSLNIEDVNLETGYIRCTGKGSKERIVPLGSL 181

Query: 241 FMKLLA----------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288
            +K +           +    +   F+N+   ++    F    K  A  A ++K  + H 
Sbjct: 182 AIKWVKEYLQQGRPKLVKDREEAALFVNHHGHRLTRQGFWKIVKKYAEDARIDKEITPHT 241

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +R   AT   + GA    +    G   +   + YT 
Sbjct: 242 LRHSFATHLLENGADLRSVQEMLGHADISTTQIYTH 277


>gi|30249429|ref|NP_841499.1| phage integrase domain/SAM domain-containing protein [Nitrosomonas
           europaea ATCC 19718]
 gi|30138792|emb|CAD85369.1| Phage integrase:Phage integrase N-terminal SAM-like domain
           [Nitrosomonas europaea ATCC 19718]
          Length = 318

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 51/277 (18%), Positives = 103/277 (37%), Gaps = 26/277 (9%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDFD-----YRKITTKHIRSGVESR---KHTPSSAIQFL 137
            L+ N+  S+ +   Q++   G           +T   + + +  R       S+  + L
Sbjct: 36  GLSRNTLASYRADLMQLVEWLGRQPRTNGSLSDVTQADLLAFLSDRIGQGVKASTTCRAL 95

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FWSEGSQPR 193
           T ++  +++ +RQ  +  +P  +++ PK         T+ +++   +        G + R
Sbjct: 96  TCIKRFYRYLLRQGKILADPATNIDSPKISRHLPVSLTETEVEALLAAPDTRQPLGLRDR 155

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDG--------FMKL 244
              E L  +GLR S+     +  ++ ++  ++   K      + L +           + 
Sbjct: 156 AMLEILYAAGLRVSELVGLSISQIRQDMGVVRILGKGSKERLIPLGEEALHWLSLYLQEA 215

Query: 245 LAMTPIGKE--TFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
             +   GK     F+      M    F    K  A +AG+ K  S H +R   AT   + 
Sbjct: 216 RPVLLAGKHSNMSFVTTRGDAMTRQAFWYLIKRHARQAGIVKLLSPHTLRHAFATHLLNH 275

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
           GA    +    G   +   + YT  A R RL   ++R
Sbjct: 276 GADLRVVQLLLGHSDISTTQIYTHVA-RERLKQLHAR 311


>gi|15598933|ref|NP_252427.1| site-specific tyrosine recombinase XerD [Pseudomonas aeruginosa
           PAO1]
 gi|107103253|ref|ZP_01367171.1| hypothetical protein PaerPA_01004322 [Pseudomonas aeruginosa PACS2]
 gi|116051736|ref|YP_789425.1| site-specific tyrosine recombinase XerD [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218889984|ref|YP_002438848.1| site-specific tyrosine recombinase XerD [Pseudomonas aeruginosa
           LESB58]
 gi|254236648|ref|ZP_04929971.1| integrase/recombinase XerD [Pseudomonas aeruginosa C3719]
 gi|254242429|ref|ZP_04935751.1| integrase/recombinase XerD [Pseudomonas aeruginosa 2192]
 gi|296387753|ref|ZP_06877228.1| site-specific tyrosine recombinase XerD [Pseudomonas aeruginosa
           PAb1]
 gi|313109145|ref|ZP_07795116.1| integrase/recombinase XerD [Pseudomonas aeruginosa 39016]
 gi|34223067|sp|Q9HXQ6|XERD_PSEAE RecName: Full=Tyrosine recombinase xerD
 gi|9949906|gb|AAG07125.1|AE004793_2 integrase/recombinase XerD [Pseudomonas aeruginosa PAO1]
 gi|115586957|gb|ABJ12972.1| integrase/recombinase XerD [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126168579|gb|EAZ54090.1| integrase/recombinase XerD [Pseudomonas aeruginosa C3719]
 gi|126195807|gb|EAZ59870.1| integrase/recombinase XerD [Pseudomonas aeruginosa 2192]
 gi|218770207|emb|CAW25969.1| integrase/recombinase XerD [Pseudomonas aeruginosa LESB58]
 gi|310881618|gb|EFQ40212.1| integrase/recombinase XerD [Pseudomonas aeruginosa 39016]
          Length = 298

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 55/288 (19%), Positives = 101/288 (35%), Gaps = 26/288 (9%)

Query: 74  LISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFDYR-----KITTKHIRSGVESR 126
           LI  +   A W    LA N+R ++ +   Q          R     +       +    +
Sbjct: 8   LIDRFL-DALWLEKGLADNTREAYRNDLQQFNAWLDGRGLRLEGIGRDAILDHLAWRLEQ 66

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185
            +   S  +FL+ +R  +++ +R   +A +P L V+ P+      +  ++ D++   +  
Sbjct: 67  GYKARSTARFLSGLRGFYRYCLRDGLIAEDPTLQVDLPQLGKPLPKSLSEADVEALLAAP 126

Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241
                 G + R   E L   GLR S+     ++ +      +K   K      V L +  
Sbjct: 127 EVDDPLGLRDRTMLEVLYACGLRVSELVGLTLEQVNLRQGVVKVFGKGSKERLVPLGEEA 186

Query: 242 MKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289
           +  L                 +  F +   ++M    F    K  A  A +  S   H +
Sbjct: 187 IGWLERYLREARGDLLGGRPSDVLFPSLRGEQMTRQTFWHRIKHHAQVAAIGTSISPHTL 246

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
           R   AT   + GA    +    G   +   + YT  A R RL   ++R
Sbjct: 247 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHIA-RARLQDLHAR 293


>gi|218778680|ref|YP_002429998.1| tyrosine recombinase XerD [Desulfatibacillum alkenivorans AK-01]
 gi|218760064|gb|ACL02530.1| tyrosine recombinase XerD [Desulfatibacillum alkenivorans AK-01]
          Length = 298

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 52/288 (18%), Positives = 98/288 (34%), Gaps = 25/288 (8%)

Query: 74  LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS------GVESR 126
           LI +Y         L+ N+  ++                  +T             + ++
Sbjct: 7   LIDQYMNYLLVEKGLSQNTLEAYGKDLGVFTDFLQKRKIDDLTKADTPDIVQHLIDLRAQ 66

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
                +  + L ++R LF +  +++ +  NP   V+ PK         +  +++Q     
Sbjct: 67  GLGARTRARHLVAIRGLFSFLEQEKIIKHNPAKLVDLPKTGLHLPDVISVVEIEQLLEAP 126

Query: 187 SE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDGF 241
           +E    G++ R   E    SGLR S+     VQ +  +   ++    G+    V +    
Sbjct: 127 NEMDILGARDRAMMELAYASGLRVSELINVRVQDIHLDAGFVRVMGKGSKERIVPMGRQA 186

Query: 242 MKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289
            + +                 E  F+    + M    F    K  A KAG+ K  + H +
Sbjct: 187 REKIKTYMDHDRPILLKGKPGEYLFVVRGGRPMTRQAFWKLLKKYALKAGIAKNITPHTL 246

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
           R   A+   + GA    +    G   +   + YT  A R RL   + R
Sbjct: 247 RHSFASHLLEGGADLRVVQEMLGHVDISTTQIYTHVA-RERLIEIHER 293


>gi|118586872|ref|ZP_01544306.1| integrase/recombinase [Oenococcus oeni ATCC BAA-1163]
 gi|118432704|gb|EAV39436.1| integrase/recombinase [Oenococcus oeni ATCC BAA-1163]
          Length = 302

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 55/286 (19%), Positives = 109/286 (38%), Gaps = 25/286 (8%)

Query: 67  KPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGV 123
           K    + ++ +Y +       L  NS  S++    +        +    K+    I   +
Sbjct: 4   KKNQFENVLLDYTRYLRTERGLLENSIKSYKQDLSEFGAYIQKENILLVKVDRFTILDWL 63

Query: 124 ESRKHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
              +++  S       ++S+R  F +    + + I+P L V  PK+ +   +  T  +++
Sbjct: 64  NYLQNSGKSNNSIVHMVSSLRKFFAYLSDDQQIQIDPMLKVTTPKKNSHLPQVLTATEIE 123

Query: 181 QFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
              +        G + R   E +  +G R S+ C   +  L + +  I T   G    + 
Sbjct: 124 AVLAVPDISTTLGLRNRALLETMYATGFRVSEICNLKLADLHDELGLITTIGKGQKQRI- 182

Query: 237 LPDGFMKLLAMTPIGKET------------FFINNDKQKMNATQFSIWFKAKATKAGVNK 284
           +P G M LL ++   KE+             F+N+   +++        K  A KAG++K
Sbjct: 183 VPIGEMSLLYISKYFKESRPILLKDKESPYLFLNDHGHRISRQGIFKLVKEIAIKAGIDK 242

Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
             S H +R   AT   + GA    +    G   +   + YT  + +
Sbjct: 243 DISPHTLRHSFATNLLENGADLRIVQELLGHSDISTTQIYTHVSQK 288


>gi|6648971|gb|AAF21314.1| site-specific recombinase [Staphylococcus aureus]
          Length = 293

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 45/275 (16%), Positives = 98/275 (35%), Gaps = 24/275 (8%)

Query: 74  LISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE------SR 126
           +I EY +       L+ N+  ++     +      +     I     +   E       +
Sbjct: 4   IIEEYLRFIQIEKGLSSNTIGAYRRDLKKYQDYMTEHHISHIDFIDRQLIQECLGHLIDQ 63

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             +  S  +F++++R   ++A+R++Y A +P + ++ PK   +       +++       
Sbjct: 64  GQSAKSIARFISTIRSFHQFAIREKYAAKDPTVLLDSPKYDKKLPDVLNVDEVLALLETP 123

Query: 187 SE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241
                 G + R   E L  +G+R S+     ++++   +  ++   K      V L D  
Sbjct: 124 DLNKINGYRDRTMLELLYATGMRVSELIHLELENVNLIMGFVRVFGKGDKERIVPLGDAV 183

Query: 242 MKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289
           ++ L                 E  F+N   + ++        K    KA + K+   H +
Sbjct: 184 IEYLTTYIETIRPQLLKKTVTEVLFLNMHGKPLSRQAIWKMIKQNGVKANIKKTLTPHTL 243

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           R   AT   + GA    +    G   +   + YT 
Sbjct: 244 RHSFATHLLENGADLRAVQEMLGHSDISTTQLYTH 278


>gi|78042632|ref|YP_360783.1| tyrosine recombinase XerD [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77994747|gb|ABB13646.1| tyrosine recombinase XerD [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 287

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 51/263 (19%), Positives = 96/263 (36%), Gaps = 18/263 (6%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITT----KHIRSGVESRKHTPSSAIQFLTSM 140
              ++N+ +S+    ++ +      +   I        +     +RK  P+S  + L ++
Sbjct: 13  KGFSLNTLLSYRRDLEKFVSFLEKRNISIIDATSKDIKLYLQDLARKLKPASVARNLAAI 72

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLAF 196
           R  +K+ +R++ V  NP L V+ PK   +     + E++            EG + R   
Sbjct: 73  RSFYKYLLREKIVGENPALDVDGPKLGLKLPEILSYEEIDLLLKAPDLSTWEGVRDRAML 132

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV--------ELPDGFMKLLAMT 248
           E L  +GLR S+     + +L  +   +K    G  + +           + ++ L A  
Sbjct: 133 ELLYATGLRVSELVNLELPNLYLDERYVKILGKGAKMRIVPFGEVAAHYLNQYLALRAKR 192

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHE 306
                  FI           F    K    KAG+  N + H +R   AT   + GA    
Sbjct: 193 KSNSLKLFITRKGSGFTRQGFWKMLKRYGQKAGIVKNLTPHLIRHSFATHLLENGADLRI 252

Query: 307 LMATYGWKTVDQAETYTKGADRI 329
           +    G   ++  + YT    R 
Sbjct: 253 VQELLGHSFIETTQIYTHLTTRK 275


>gi|82751090|ref|YP_416831.1| site-specific recombinase [Staphylococcus aureus RF122]
 gi|82656621|emb|CAI81047.1| site-specific recombinase [Staphylococcus aureus RF122]
          Length = 295

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 45/275 (16%), Positives = 98/275 (35%), Gaps = 24/275 (8%)

Query: 74  LISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE------SR 126
           +I EY +       L+ N+  ++     +      +     I     +   E       +
Sbjct: 4   IIEEYLRFIQIEKGLSSNTIGAYRRDLKKYQDYMTEHHISHIDFIDRQLIQECLGHLIDQ 63

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             +  S  +F++++R   ++A+R++Y A +P + ++ PK   +       +++       
Sbjct: 64  GQSAKSIARFISTIRSFHQFAIREKYAAKDPTVLLDSPKYDKKLPDVLNVDEVLALLETL 123

Query: 187 SE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241
                 G + R   E L  +G+R S+     ++++   +  ++   K      V L D  
Sbjct: 124 DLNKINGYRDRTMLELLYATGMRVSELIHLELENVNLIMGFVRVFGKGDKERIVPLGDAV 183

Query: 242 MKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289
           ++ L                 E  F+N   + ++        K    KA + K+   H +
Sbjct: 184 IEYLTTYIETIRPQLLKKTVTEVLFLNMHGKPLSRQAIWKMIKQNGVKANIKKTLTPHTL 243

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           R   AT   + GA    +    G   +   + YT 
Sbjct: 244 RHSFATHLLENGADLRAVQEMLGHSDISTTQLYTH 278


>gi|170017033|ref|YP_001727952.1| site-specific recombinase XerD [Leuconostoc citreum KM20]
 gi|169803890|gb|ACA82508.1| Site-specific recombinase XerD [Leuconostoc citreum KM20]
          Length = 298

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 53/286 (18%), Positives = 99/286 (34%), Gaps = 24/286 (8%)

Query: 71  LKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR-----SGVE 124
           ++  IS+Y         L+ N+  S+    +Q                HI      + + 
Sbjct: 5   IEDAISDYIHYIRIERGLSENTITSYRQDLNQFGMYLSQEHLLLGEVDHIVVLSWLNRLR 64

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
           +   + SS I+ +TS+R  F +  ++  +  NP   V+ PK+        + E++     
Sbjct: 65  TNGKSNSSVIRMVTSLRRFFGYLTQENMITHNPMSHVKPPKKAAHLPAVLSFEEIDTLLG 124

Query: 185 F----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPD 239
                   G + R   E +  +GLR S+     +  L   +  I+T  K      + + +
Sbjct: 125 VPVPSTPLGMRNRTLLEVMYATGLRVSELVNLKMSDLHIQLGLIQTLGKGDKERIIPIGE 184

Query: 240 GFMKLLAMTPIGK----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287
             +  L     G              F+N+   ++         K    +AG+ K  S H
Sbjct: 185 VAVDWLERYFAGARLTLLKAQESPYVFVNDRGGQLTRQGVWKIIKKLVLEAGITKDVSPH 244

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
            +R   AT   + GA    +    G   +   + YT    + RL  
Sbjct: 245 TLRHSFATHILENGADLRIVQELLGHADISTTQIYTH-ISKKRLSE 289


>gi|302389829|ref|YP_003825650.1| tyrosine recombinase XerD subunit [Thermosediminibacter oceani DSM
           16646]
 gi|302200457|gb|ADL08027.1| tyrosine recombinase XerD subunit [Thermosediminibacter oceani DSM
           16646]
          Length = 299

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 53/276 (19%), Positives = 104/276 (37%), Gaps = 26/276 (9%)

Query: 74  LISEYRK--SAHWGSLAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVESR 126
           L+ ++ +  S     LA N+  S+             +   D  +   TT      +  +
Sbjct: 8   LLKQFLEFLSVE-KGLARNTIESYRRDLKSYLVFLRSQHIPDIKFTSKTTIISYLLLMQK 66

Query: 127 KHTPSS-AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
               SS   +   +++  + + VR+ Y+  +P ++++ PK + +  R  T E++++    
Sbjct: 67  SGKASSSISRACAAIKSFYHFLVRERYIQEDPTVNLDTPKLEKKLPRVLTVEEVERLLEQ 126

Query: 186 W----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240
                  G + +   E L  +G+R S+     V  +  ++  ++   K      V +   
Sbjct: 127 PDTSNPLGFRDKTMLEVLYATGIRVSELISLTVDDVNLDMGFLRCLGKGSKERIVPIGSF 186

Query: 241 FMKLLAMTPI--------GKET--FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288
            +  L             GK T   F+N+  Q +    F    K  A KAG+NK  + H 
Sbjct: 187 AVNYLRQYINDVRKKILKGKSTNILFVNHMGQALTRQGFWKIIKKYARKAGINKVITPHT 246

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +R   AT   + GA    +    G   +   + YT 
Sbjct: 247 LRHSFATHLIENGADLRAVQEMLGHADISTTQVYTH 282


>gi|221135227|ref|ZP_03561530.1| site-specific tyrosine recombinase XerD [Glaciecola sp. HTCC2999]
          Length = 303

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 50/287 (17%), Positives = 106/287 (36%), Gaps = 32/287 (11%)

Query: 85  GSLAVNSRISFESYFDQIIR----KSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFL 137
             L+ N+  ++++   Q+ R    +   F    IT   IR+ +  R+    +  S  + L
Sbjct: 24  KGLSDNTLSAYQTDLRQLCRFLTQQDAAFSLVDITDTDIRAYLSHRQANNVSARSTARAL 83

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPR 193
           +S++   K+ + ++    +P   ++ PK         T+  ++   +      + G + +
Sbjct: 84  SSLKTFIKYCLSEKIRDDDPLRHIKPPKVAVSLPDSLTEAQVESLLAAPDTALAVGQRDK 143

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLL------- 245
              E L  +GLR ++     +  +      ++   K      V L +  ++ L       
Sbjct: 144 AMLEVLYATGLRVTELVGLRLDQMSLLQGVVRVIGKGNKERLVPLGEPAIEALTLFLQQG 203

Query: 246 --AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAG 301
              +     +  F +    +M    F    K  A  AG+  + S H +R   AT   + G
Sbjct: 204 RHELLKHSSDVVFPSTRGTQMTRQTFWHRIKHYAMVAGIQVHLSPHTLRHAFATHLLNHG 263

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
           A    +    G   +   + YT  A         S R++ +++S  P
Sbjct: 264 ADLRVVQLLLGHSDLSTTQIYTHVA---------SERLTHIIESHHP 301


>gi|332184671|gb|AEE26925.1| Tyrosine recombinase xerD [Francisella cf. novicida 3523]
          Length = 292

 Score =  154 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 44/265 (16%), Positives = 89/265 (33%), Gaps = 20/265 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKI---TTKHIRSGVESRKHTPSSAIQFLTSMR 141
             L+ N+  S+ +    +       D   +         S      ++  S  + ++++R
Sbjct: 16  HGLSQNTISSYRTDLKLLENYFAKTDLISLDFEQLYAFISYRSKNGYSSRSNARMISTLR 75

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFE 197
             + W +       NP   +  PK   +  +  T+ D+++           G + +   E
Sbjct: 76  KFYAWLISTGQTNNNPTAKLTLPKLAKKLPKDMTETDVERLLHAPDMTEDVGIRDKAMLE 135

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDGFMKLLAMTPIGKET-- 254
            +  +GLR S+     +  +  NI  I+    G+    V + +  ++ L           
Sbjct: 136 LMYATGLRVSELVGLNIDDIDINIGVIQVMGKGSKERIVPIGEYALEYLQKYFAEARMSL 195

Query: 255 --------FFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATA 304
                    FI+   +++    F    K  A  AG+  + S H +R   AT   + GA  
Sbjct: 196 SKNFKEKAVFISKHTKRITRQSFWHRIKNYALIAGINTDISPHTLRHAFATHLLNHGADL 255

Query: 305 HELMATYGWKTVDQAETYTKGADRI 329
             +    G   V     YT  +   
Sbjct: 256 RSVQLLLGHSNVSTTTIYTHISQNR 280


>gi|330504633|ref|YP_004381502.1| site-specific tyrosine recombinase XerD [Pseudomonas mendocina
           NK-01]
 gi|328918919|gb|AEB59750.1| site-specific tyrosine recombinase XerD [Pseudomonas mendocina
           NK-01]
          Length = 313

 Score =  154 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 53/289 (18%), Positives = 110/289 (38%), Gaps = 28/289 (9%)

Query: 74  LISEYRKSAHW--GSLAVNSRISFES---YFDQIIRKSGDFDYRKITTKHIR---SGVES 125
           LI  + + A W    L+ +++ ++ S   +F+  +   G    + I    I    +    
Sbjct: 23  LIERFLE-AQWLEKGLSAHTQAAYRSDLEHFNAWLDARG-LALQHIGRDAILDHLAWRLE 80

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           + +   S  +FL+ +R  +++ +R+  ++ +P L VE P+      +  ++ D++     
Sbjct: 81  QGYQARSTARFLSGVRGFYRFLLREMLISEDPTLQVELPQIGRPLPKSLSEADVEALLQA 140

Query: 186 ----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240
                  G + R   E L   GLR S+     ++ +      ++   K      V L + 
Sbjct: 141 PDLDDPIGLRDRAMLEVLYACGLRVSELVGLTLEQVNLRQGVLRVFGKGSKERLVPLGEE 200

Query: 241 FMKLLAMTPIGKETFFI----------NNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288
            +  +           +          +   ++M    F    K +A  AG++K  S H 
Sbjct: 201 AIAWIERYMREARPLLLGGKPSDVLFPSLRGEQMTRQTFWHRIKHQARVAGISKALSPHT 260

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
           +R   AT   + GA    +    G   +   + YT  A R RL   +++
Sbjct: 261 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHIA-RARLQELHAQ 308


>gi|227431702|ref|ZP_03913732.1| site-specific recombinase XerD [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
 gi|227352526|gb|EEJ42722.1| site-specific recombinase XerD [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
          Length = 298

 Score =  154 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 55/286 (19%), Positives = 98/286 (34%), Gaps = 24/286 (8%)

Query: 71  LKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR-----SGVE 124
           +   I +Y         L+ N+  S+     Q                HI      + + 
Sbjct: 5   IDNAIVDYLHYIRIERGLSENTIKSYHQDLVQFGEYLNGEKLVLDQVDHIVILSWLNQLR 64

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
               + SS I+ +T++R  F + VR++ VA NP   V  PK+        + E++ +   
Sbjct: 65  DLGKSNSSVIRMVTTLRNFFGYLVREKVVAHNPMNDVRPPKKAEHLPAVLSIEEIDRLLQ 124

Query: 185 F----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPD 239
                   G + R   E +  +GLR S+     +  L   +  I+T  K      + + +
Sbjct: 125 APIEDTPLGLRNRTLIEVMYATGLRVSELVNLKMSDLHLQLGLIQTLGKGDKERIIPIGE 184

Query: 240 GFMKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287
             +  L                    F+N+   +++        K   T AG+ K  S H
Sbjct: 185 IAIDWLTRYFNESRIVLLKDKESPYVFLNDRGNQISRQGIWKIIKKLVTTAGITKDVSPH 244

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
            +R   AT   + GA    +    G   +   + YT    + RL  
Sbjct: 245 TLRHSFATHILENGADLRIVQELLGHADISTTQIYTH-ISKKRLSE 289


>gi|157960633|ref|YP_001500667.1| tyrosine recombinase XerD [Shewanella pealeana ATCC 700345]
 gi|157845633|gb|ABV86132.1| tyrosine recombinase XerD [Shewanella pealeana ATCC 700345]
          Length = 300

 Score =  154 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 55/297 (18%), Positives = 114/297 (38%), Gaps = 25/297 (8%)

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFE---SYFDQIIRKSGDFDYR--KITTK 117
           S +  P ++  L  +   S     L+ N+  ++     + D+ ++K GD      +   +
Sbjct: 2   SEKYTPNSIIDLFLDDLWST--KGLSDNTLSAYRTDLRHLDRYLQKQGDDLVTCSQFDIR 59

Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
           +  +    +    +S+ + ++S+R  + + + ++ +  +P   +E PK   +     ++E
Sbjct: 60  NYLAERFDKGFAKTSSARMMSSLRRFYGYLIVKKQIDSDPMALIESPKLARKLPDSLSEE 119

Query: 178 DMQQFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTI 232
           D+ +  +         S+ +   E L  +GLR S+     ++ L      ++ T K G  
Sbjct: 120 DIDRLLAEPEQDDPIESRDKAMLELLYATGLRVSELVGLTMEQLSLRQGLVRITGKGGKE 179

Query: 233 ITVELPD----------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
             V L +           F +   +     +  F +   Q+M    F    K  A +AG+
Sbjct: 180 RLVPLGELAITEIESYLKFARAELLKGKQSDVLFPSKRAQQMTRQTFWHRIKLYALRAGI 239

Query: 283 --NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
               S H +R   AT   + GA    +    G   +   + YT  A   RL   +S 
Sbjct: 240 STELSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAT-ARLASLHSE 295


>gi|329730857|gb|EGG67235.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           21193]
          Length = 295

 Score =  154 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 45/275 (16%), Positives = 99/275 (36%), Gaps = 24/275 (8%)

Query: 74  LISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE------SR 126
           +I EY +       L+ N+  ++     +      +     I     +  +E       +
Sbjct: 4   IIEEYLRFIQIEKGLSSNTIGAYRRDLKKYQDYMTEHHISHIDFIDRQLILECLGHLIDQ 63

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             +  S  +F++++R   ++A+R++Y A +P + ++ PK   +       +++       
Sbjct: 64  GQSAKSIARFISTIRSFHQFAIREKYAAKDPTVLLDSPKYDKKLPDVLNVDEVLALLETP 123

Query: 187 SE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241
                 G + R   E L  +G+R S+     ++++   +  ++   K      V L D  
Sbjct: 124 DLNKINGYRDRTMLELLYATGMRVSELIHLELENVNLIMGFVRVFGKGDKERIVPLGDAV 183

Query: 242 MKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289
           ++ L                 E  F+N   + ++        K    KA + K+   H +
Sbjct: 184 IEYLTTYIETIRPQLLKKTVTEVLFLNMHGKPLSRQAIWKMIKQNGVKANIKKTLTPHTL 243

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           R   AT   + GA    +    G   +   + YT 
Sbjct: 244 RHSFATHLLENGADLRAVQEMLGHSDISTTQLYTH 278


>gi|9622620|gb|AAF89876.1| putative site-specific recombinase XerD [Staphylococcus aureus]
          Length = 295

 Score =  154 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 45/275 (16%), Positives = 98/275 (35%), Gaps = 24/275 (8%)

Query: 74  LISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE------SR 126
           +I EY +       L+ N+  ++     +      +     I     +   E       +
Sbjct: 4   IIEEYLRFIQIEKGLSSNTIGAYRRDLKKYQDYMTEHHISHIDFIDRQLIQECLGHLIDQ 63

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             +  S  +F++++R   ++A+R++Y A +P + ++ PK   +       +++       
Sbjct: 64  GQSAKSIARFISTIRSFHQFAIREKYAAKDPTVLLDSPKYDKKLPDVLNVDEVLALLETP 123

Query: 187 SE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241
                 G + R   E L  +G+R S+     ++++   +  ++   K      V L D  
Sbjct: 124 DLNKINGYRDRTMLELLYATGMRVSELIHLELENVNLIMGFVRVFGKGDKERIVPLGDAV 183

Query: 242 MKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289
           ++ L                 E  F+N   + ++        K    KA + K  + H +
Sbjct: 184 IEYLTTYIETIRPQLLKKTVTEVLFLNMHGKPLSRQAIWKMIKQNGVKANIKKKLTPHTL 243

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           R   AT   + GA    +    G   +   + YT 
Sbjct: 244 RHSFATHLLENGADLRAVQEMLGHSDISTTQLYTH 278


>gi|282916763|ref|ZP_06324521.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           D139]
 gi|283770568|ref|ZP_06343460.1| tyrosine recombinase xerD [Staphylococcus aureus subsp. aureus H19]
 gi|282319250|gb|EFB49602.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           D139]
 gi|283460715|gb|EFC07805.1| tyrosine recombinase xerD [Staphylococcus aureus subsp. aureus H19]
 gi|302333169|gb|ADL23362.1| site-specific recombinase XerD [Staphylococcus aureus subsp. aureus
           JKD6159]
          Length = 295

 Score =  154 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 46/275 (16%), Positives = 98/275 (35%), Gaps = 24/275 (8%)

Query: 74  LISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE------SR 126
           +I EY +       L+ N+  ++     +      +     I     +   E       +
Sbjct: 4   IIEEYLRFIQIEKGLSSNTIGAYRRDLKKYQDYMTEHHISHIDFIDRQLIQECLGHLIDQ 63

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             +  S  +F++++R   ++A+R++Y A +P + ++ PK   +       +++       
Sbjct: 64  GQSAKSIARFISTIRSFHQFAIREKYAAKDPTVLLDSPKYDKKLPDVLNVDEVLALLETP 123

Query: 187 SE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241
                 G + R   E L  +G+R S+     ++H+   +  ++   K      V L D  
Sbjct: 124 DLNKINGYRDRTMLELLYATGMRVSELIHLELEHVNLIMGFVRVFGKGDKERIVPLGDAV 183

Query: 242 MKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289
           ++ L                 E  F+N   + ++        K    KA + K+   H +
Sbjct: 184 IEYLTTYIETIRPQLLKKTVTEVLFLNMHGKPLSRQAIWKMIKQNGVKANIKKTLTPHTL 243

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           R   AT   + GA    +    G   +   + YT 
Sbjct: 244 RHSFATHLLENGADLRAVQEMLGHSDISTTQLYTH 278


>gi|291615189|ref|YP_003525346.1| tyrosine recombinase XerD [Sideroxydans lithotrophicus ES-1]
 gi|291585301|gb|ADE12959.1| tyrosine recombinase XerD [Sideroxydans lithotrophicus ES-1]
          Length = 303

 Score =  154 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 51/275 (18%), Positives = 97/275 (35%), Gaps = 24/275 (8%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDFD---YRKITTKHIRSGVESR----KHTPSSAIQFLT 138
            L+ N+  S+    ++             +  T   I+  +       K   +S  + ++
Sbjct: 24  GLSRNTLESYRRDLNKFTEWLQKQRGCGLQAATHADIQGFLAHLVSGEKAKATSTSRAIS 83

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194
           S++ LF++ +RQ  +  +P L +  PK      +  T+ED++   +        G + R 
Sbjct: 84  SLKRLFRYLLRQNKITADPTLQIATPKLPRSLPKSLTEEDVELLLNAPDVDTPLGMRDRT 143

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDG--------FMKLL 245
             E L  SGLR S+     V  +  ++   +    G+    V L +           +  
Sbjct: 144 MLEVLYASGLRVSELVGLSVAQVSLDMGVTRVMGKGSKERLVPLGEEALDWVKRYLAEAR 203

Query: 246 AMTPIG--KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301
                G   +  F+    + M    F    K  A + G++K  S H +R   AT   + G
Sbjct: 204 PALLAGQVADALFVTQRGEGMTRQMFWYLIKKHAKEGGLHKPLSPHTLRHAFATHLLNHG 263

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
           A    +    G   +   + YT  A      +   
Sbjct: 264 ADLRVVQMLLGHSDISTTQIYTHVARERLKALHAM 298


>gi|116618399|ref|YP_818770.1| tyrosine recombinase XerD subunit [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|116097246|gb|ABJ62397.1| tyrosine recombinase XerD subunit [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
          Length = 297

 Score =  154 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 55/286 (19%), Positives = 98/286 (34%), Gaps = 24/286 (8%)

Query: 71  LKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR-----SGVE 124
           +   I +Y         L+ N+  S+     Q                HI      + + 
Sbjct: 4   IDNAIVDYLHYIRIERGLSENTIKSYHQDLVQFGEYLNGEKLVLDQVDHIVILSWLNKLR 63

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
               + SS I+ +T++R  F + VR++ VA NP   V  PK+        + E++ +   
Sbjct: 64  DLGKSNSSVIRMVTTLRNFFGYLVREKVVAHNPMNDVRPPKKAEHLPAVLSIEEIDRLLQ 123

Query: 185 F----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPD 239
                   G + R   E +  +GLR S+     +  L   +  I+T  K      + + +
Sbjct: 124 APIEDTPLGLRNRTLLEVMYATGLRVSELVNLKMSDLHLQLGLIQTLGKGDKERIIPIGE 183

Query: 240 GFMKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287
             +  L                    F+N+   +++        K   T AG+ K  S H
Sbjct: 184 IAIDWLTRYFNESRIVLLKDKESPYVFLNDRGNQISRQGIWKIIKKLVTTAGITKDVSPH 243

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
            +R   AT   + GA    +    G   +   + YT    + RL  
Sbjct: 244 TLRHSFATHILENGADLRIVQELLGHADISTTQIYTH-ISKKRLSE 288


>gi|295428073|ref|ZP_06820705.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|295128431|gb|EFG58065.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           EMRSA16]
          Length = 297

 Score =  153 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 45/275 (16%), Positives = 98/275 (35%), Gaps = 24/275 (8%)

Query: 74  LISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE------SR 126
           +I EY +       L+ N+  ++     +      +     I     +   E       +
Sbjct: 6   IIEEYLRFIQIEKGLSSNTIGAYRRDLKKYQDYMTEHHISHIDFIDRQLIQECLGHLIDQ 65

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             +  S  +F++++R   ++A+R++Y A +P + ++ PK   +       +++       
Sbjct: 66  GQSAKSIARFISTIRSFHQFAIREKYAAKDPTVLLDSPKYDKKLPDVLNVDEVLALLETP 125

Query: 187 SE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241
                 G + R   E L  +G+R S+     ++++   +  ++   K      V L D  
Sbjct: 126 DLNKINGYRDRTMLELLYATGMRVSELIHLELENVNLIMGFVRVFGKGDKERIVPLGDAV 185

Query: 242 MKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289
           ++ L                 E  F+N   + ++        K    KA + K+   H +
Sbjct: 186 IEYLTTYIETIRPQLLKKTVTEVLFLNMHGKPLSRQAIWKMIKQNGVKANIKKTLTPHTL 245

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           R   AT   + GA    +    G   +   + YT 
Sbjct: 246 RHSFATHLLENGADLRAVQEMLGHSDISTTQLYTH 280


>gi|254360931|ref|ZP_04977077.1| site-specific recombinase XerD [Mannheimia haemolytica PHL213]
 gi|261493842|ref|ZP_05990354.1| site-specific recombinase XerD [Mannheimia haemolytica serotype A2
           str. BOVINE]
 gi|261495108|ref|ZP_05991572.1| site-specific recombinase XerD [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|153092410|gb|EDN73473.1| site-specific recombinase XerD [Mannheimia haemolytica PHL213]
 gi|261309178|gb|EEY10417.1| site-specific recombinase XerD [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261310444|gb|EEY11635.1| site-specific recombinase XerD [Mannheimia haemolytica serotype A2
           str. BOVINE]
          Length = 297

 Score =  153 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 47/284 (16%), Positives = 100/284 (35%), Gaps = 24/284 (8%)

Query: 71  LKWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVES 125
           L  +I ++  +      L+ N+  S+ S  ++      +         I  +        
Sbjct: 4   LDPIIEQFLDTLWQEHGLSENTVASYRSDLERFSDYFSEPKAFLSLDHIDLQGFLGERLE 63

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQ 181
           + +  +S+ + L+ +R  F++   + Y   +P L++  PKR     +  +++ +      
Sbjct: 64  QGYKATSSARMLSCLRKFFRFLCLEHYRQDDPTLTLSSPKRGASLPKSLSEDQVMDLLDA 123

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240
             +      + +   E L  +GLR ++     + ++      ++   K      V L + 
Sbjct: 124 PNTLDPIELRDKAMLELLYATGLRVTELVSLSMDNISLKQGVVRIIGKGDKERLVPLGEE 183

Query: 241 FMKLLAMTPIGKETFFINN----------DKQKMNATQFSIWFKAKATKAGVNK---SAH 287
               +           +NN            Q+M    F    K  A  AG++    S H
Sbjct: 184 ANYWIQEFFQYGRPILLNNQQSDVVFPSRRGQQMTRQTFWHRIKHYAVLAGIDADKLSPH 243

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            +R   AT   + GA    +    G   +   + YT+ A + RL
Sbjct: 244 VLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTQVA-KARL 286


>gi|255026410|ref|ZP_05298396.1| hypothetical protein LmonocytFSL_08880 [Listeria monocytogenes FSL
           J2-003]
          Length = 290

 Score =  153 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 49/288 (17%), Positives = 104/288 (36%), Gaps = 33/288 (11%)

Query: 73  WLISEYRKSAHW----GSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVE 124
            LI ++    H+      L+ N+  ++E      +          D   +    I   + 
Sbjct: 3   DLIEDFL---HFLIVERGLSANTIKAYERDLHYFVSYMDVTKELTDPNTLERSDIVGFMA 59

Query: 125 ---SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
                  +P S  +++ S+R  F + +    ++ +P + +E PK+     +    +D+++
Sbjct: 60  FARQEGKSPRSVARYIASLRSFFHYLMHDGKMSHDPMIQIETPKQAKGLPKVLNLDDVEK 119

Query: 182 FK----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE 236
                 +    G + +   E L  +GLR ++     +  L  ++  I+T  K      + 
Sbjct: 120 LLSSSDTSTPLGLRDQAMMEILYATGLRVTELVSLKMDDLHLHMGFIQTIGKGDKERIIP 179

Query: 237 L-----------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284
           L            +     L       +  F+N+  Q +    F    K  A ++G+ K 
Sbjct: 180 LGKTATTVLEKYLEEARPKLRRPKYRNDFVFLNHHGQGLTRQGFWKILKGIAKESGIEKP 239

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            + H +R   AT   + GA    +    G   +   + YT    ++RL
Sbjct: 240 ITPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTH-VTKLRL 286


>gi|160884146|ref|ZP_02065149.1| hypothetical protein BACOVA_02123 [Bacteroides ovatus ATCC 8483]
 gi|156110488|gb|EDO12233.1| hypothetical protein BACOVA_02123 [Bacteroides ovatus ATCC 8483]
          Length = 319

 Score =  153 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 55/275 (20%), Positives = 104/275 (37%), Gaps = 24/275 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQII-----RKSGDFDYRKITTKHIRSGVESRK 127
           +I +Y++      SL+ N+  ++ +   ++I      K G  D      +H  +G+    
Sbjct: 16  IIRKYQQYLKLEKSLSPNTLDAYLTDLYKLINFLEQEKVGILDVCLSDLQHFAAGLHDIG 75

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
             P S  + L+ ++  F++ + ++Y+  +P   +E PK   +     T E++ +  S   
Sbjct: 76  IHPRSQARILSGIKSFFRFLIIEDYLEADPSELLEGPKIGFKLPEVLTVEEIDRIISAVD 135

Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-VELPDGFM 242
               EG + R   E L   GLR S+     +  L  +   IK +  G+    V +    +
Sbjct: 136 RSKAEGQRNRAILETLYSCGLRVSELVTLKLSDLYFDEGFIKVEGKGSKQRLVPISPRAI 195

Query: 243 KLLAMTPIG-----------KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289
             + +                  F      + ++        K  A KAG+ K  S H  
Sbjct: 196 NEIKLYIPDRNQIEVKKGHEDFVFVSQRRGKGLSRIMIFHMIKELAEKAGITKNISPHTF 255

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           R   AT   + GA    +    G +++   E YT 
Sbjct: 256 RHSFATHLLEGGANLRAIQCMLGHESIATTEIYTH 290


>gi|323439501|gb|EGA97222.1| site-specific recombinase [Staphylococcus aureus O11]
 gi|323441531|gb|EGA99182.1| site-specific recombinase [Staphylococcus aureus O46]
          Length = 295

 Score =  153 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 46/275 (16%), Positives = 98/275 (35%), Gaps = 24/275 (8%)

Query: 74  LISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE------SR 126
           +I EY +       L+ N+  ++     +      +     I     +   E       +
Sbjct: 4   IIEEYLRFIQIEKGLSSNTIGAYRRDLKKYQDYMTEHHISHIDFIDRQLIQECLGHLIDQ 63

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             +  S  +F++++R   ++A+R++Y A +P + ++ PK   +       +++       
Sbjct: 64  GQSAKSIARFISTIRSFHQFAIREKYAAKDPTVLLDSPKYDKKLPDVLNVDEVLALLETP 123

Query: 187 SE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241
                 G + R   E L  +G+R S+     ++H+   +  ++   K      V L D  
Sbjct: 124 DLNKINGYRDRTMLELLYATGMRVSELIHLELEHVNLIMGFVRVFGKGDKERIVPLGDTV 183

Query: 242 MKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289
           ++ L                 E  F+N   + ++        K    KA + K+   H +
Sbjct: 184 IEYLTTYIETIRPQLLKKTVTEVLFLNMHGKPLSRQAIWKMIKQNGVKANIKKTLTPHTL 243

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           R   AT   + GA    +    G   +   + YT 
Sbjct: 244 RHSFATHLLENGADLRAVQEMLGHSDISTTQLYTH 278


>gi|303241573|ref|ZP_07328073.1| tyrosine recombinase XerD [Acetivibrio cellulolyticus CD2]
 gi|302590891|gb|EFL60639.1| tyrosine recombinase XerD [Acetivibrio cellulolyticus CD2]
          Length = 294

 Score =  153 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 45/269 (16%), Positives = 103/269 (38%), Gaps = 23/269 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKI------TTKHIRSGVESRKHTPSSAIQFLT 138
             L++N+  S+    +Q I    +   + I      T       ++ +    S+  + L 
Sbjct: 16  KRLSLNTLQSYRRDIEQYITYLNEIKLQNISNTNKTTVITYLLHLQKKGRATSTISRNLA 75

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRL 194
           S+R  +++  +   ++ +P   +E PK + +  +  + ++++           +G + + 
Sbjct: 76  SIRSFYQYLTKNGVISGDPTEELESPKVEKKLPQILSTKEVELLLDQPKCDDLKGFRDKA 135

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE--------LPDGFMKL-- 244
             E L  +G+R S+     V  +  ++  IK  K      +         L +   K   
Sbjct: 136 MLELLYATGIRVSELICLNVLDINLDMGFIKCNKGTRERMIPIGSLSIQALNEYLAKSRN 195

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302
           L +    ++  F+N + +++    F    K     A +NK  + H +R   A    + GA
Sbjct: 196 LLIQRSDEKALFVNVNGKRLTRQGFWKIIKQYKNLAKINKDITPHTLRHSFAAHLLENGA 255

Query: 303 TAHELMATYGWKTVDQAETYTKGA-DRIR 330
               +    G   +   + Y + A +RI+
Sbjct: 256 DLRSIQEMLGHSDISSTQVYAQIAKNRIK 284


>gi|282880564|ref|ZP_06289271.1| phage integrase domain protein [Prevotella timonensis CRIS 5C-B1]
 gi|281305667|gb|EFA97720.1| phage integrase domain protein [Prevotella timonensis CRIS 5C-B1]
          Length = 316

 Score =  153 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 43/276 (15%), Positives = 101/276 (36%), Gaps = 23/276 (8%)

Query: 70  TLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIR---SGV 123
           ++  ++  Y +      + + ++  +++     ++    +     + +  K +      +
Sbjct: 7   SVANVVKAYTRYLKLERNYSPHTLDAYQHDLRWLLDYCENAGMHPKDMQLKDLELFAGQL 66

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
                 P+S  + L+ +R  +++ V    +  +P   +E P+         + E++   +
Sbjct: 67  HEHHIGPTSQARILSGVRSFYRFLVLDGRIEQDPTELLESPRLGEHLPEVLSTEEVDMIE 126

Query: 184 SFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELP 238
           +       EG + +   E L   GLR S+     + +L      ++    G+    V + 
Sbjct: 127 NSIDLSKPEGQRNKAIIEVLFSCGLRVSELVNLKLSNLYLEEGFVRVMGKGSKERLVPIS 186

Query: 239 DGF----------MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286
                          L+ +    ++  F+N   + +  T   I  K +A  AG+ K  S 
Sbjct: 187 SKAIRELQYWFVDRNLMKIQQGEEDYVFLNRRGKHLTRTMILIMLKRQAVAAGITKTISP 246

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           H +R   AT     GA    + A  G +++   E Y
Sbjct: 247 HTLRHSFATELLKGGADLRAIQAMLGHESIGTTELY 282


>gi|51596111|ref|YP_070302.1| integrase [Yersinia pseudotuberculosis IP 32953]
 gi|51589393|emb|CAH21015.1| putative integrase [Yersinia pseudotuberculosis IP 32953]
          Length = 340

 Score =  153 bits (387), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 68/336 (20%), Positives = 116/336 (34%), Gaps = 35/336 (10%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
           +PP     R R GK  Y FR   GR IRL     S        A        E +   +K
Sbjct: 13  MPP-----RVRKGKSAYEFRAIDGRTIRLCNFECSQ--ADVWVAF-------EKLMINQK 58

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
           + +T   LI+E+  S  +  LA  ++  +  Y  +II   G      I  +HIR  ++ R
Sbjct: 59  EDSTFTGLINEFLLSGDFCELASETQKDYHKYSSKIIAVFGKMSPDNIRPEHIRKYMDKR 118

Query: 127 KHTPS-SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
                  A +  + M  +F+W   +  V +NPC  V++ K K    R  T E+       
Sbjct: 119 GAKSRVQANREKSFMSRVFRWGYERGKVKLNPCQGVKQFKEKVR-TRYITDEEYTALYDT 177

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---IITVELPDGFM 242
               S  ++A E       R +D        L  +   I+  KTG       +      +
Sbjct: 178 AP--SVVKVAMELAYLCCTRQADILDMKKGQLLESGILIQQSKTGVAQIKAWIPRLHEVI 235

Query: 243 KLLAMTPIGKE----TFFINNDKQKMNATQFSIWFKAKATKAGVNK-------SAHGVRK 291
           +L +  P+ +              +     F+  +      A +         + H ++ 
Sbjct: 236 RLASTLPLNRGVVSIYLLHQQSGSRFTRDSFNAHWMKAKKAATMKYPELEFNFTFHDLKA 295

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
              +       + ++  A  G K   Q   Y +  +
Sbjct: 296 KGISDLT---GSLYDKQAISGHKNASQTARYDRKIN 328


>gi|260583968|ref|ZP_05851716.1| tyrosine recombinase XerD [Granulicatella elegans ATCC 700633]
 gi|260158594|gb|EEW93662.1| tyrosine recombinase XerD [Granulicatella elegans ATCC 700633]
          Length = 297

 Score =  153 bits (387), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 46/276 (16%), Positives = 97/276 (35%), Gaps = 24/276 (8%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI------RSGVESRKHTPS 131
           +  S     L+ N+ +S++    +  +   +   R                ++   +  S
Sbjct: 8   FVDSLAIQGLSQNTVMSYQRDLMKFYQFLKEQQIRDWKEVDYSLIVLFLQDLKQDGYATS 67

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS---- 187
           S  + ++ ++  FK+  +++ V  NP   ++ PK+     +  T +++ Q  +       
Sbjct: 68  STSRMISCLKKFFKFLQQEQLVETNPVQPLKVPKKSKMLPKALTVDEVTQVLNSCDTSTV 127

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF----- 241
            G + +   E L  +G+R S+     +  L   +  ++T  K      + +         
Sbjct: 128 LGLRDKAMLELLYATGMRVSELITLKLSDLHLELGFLQTIGKGNKQRIIPIGQAATNWVQ 187

Query: 242 ------MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFS 293
                   +L       E  F+N+         F    K    +AGV+K  S H +R   
Sbjct: 188 HYLTYARVVLEQESNPVEYLFLNHRGNGFTRQGFWKNLKKIVQEAGVHKDVSPHTLRHSF 247

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           AT   +AGA    +    G   +   + YT   +  
Sbjct: 248 ATHILEAGADLRIVQELLGHSDISTTQIYTHLTNER 283


>gi|118498126|ref|YP_899176.1| site-specific recombinase [Francisella tularensis subsp. novicida
           U112]
 gi|194323353|ref|ZP_03057137.1| tyrosine recombinase XerD [Francisella tularensis subsp. novicida
           FTE]
 gi|254373477|ref|ZP_04988965.1| site specific recombinase XerD [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|118424032|gb|ABK90422.1| site-specific recombinase [Francisella novicida U112]
 gi|151571203|gb|EDN36857.1| site specific recombinase XerD [Francisella novicida GA99-3549]
 gi|194322717|gb|EDX20197.1| tyrosine recombinase XerD [Francisella tularensis subsp. novicida
           FTE]
          Length = 292

 Score =  153 bits (387), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 45/265 (16%), Positives = 90/265 (33%), Gaps = 20/265 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKI---TTKHIRSGVESRKHTPSSAIQFLTSMR 141
             L+ N+  S+ +    +       D   +         S      ++  S  + ++++R
Sbjct: 16  HGLSQNTISSYRTDLKFLQNYFAKTDLISLDFEQLYAFISYRSKNGYSSRSNARMISTLR 75

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFE 197
             + W +       NP   +  PK   +  +  T+ D+++           G + +   E
Sbjct: 76  KFYAWLISTGQTNNNPTAKLTLPKLAKKLPKDMTETDVERLLQAPDMTEDVGIRDKAMLE 135

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDGFMKLLAMTPIGKET-- 254
            +  +GLR S+     +  +  NI  I+    G+    V + +  ++ L        T  
Sbjct: 136 LMYATGLRVSELVGLNIDDIDINIGVIQVMGKGSKERIVPIGEYALEYLQKYFAEARTSL 195

Query: 255 --------FFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATA 304
                    FI+   +++    F    K  A  AG+  + S H +R   AT   + GA  
Sbjct: 196 SKNFKEKAVFISKHAKRITRQSFWHRIKNYALIAGINTDISPHTLRHAFATHLLNHGADL 255

Query: 305 HELMATYGWKTVDQAETYTKGADRI 329
             +    G   V     YT  +   
Sbjct: 256 RSVQLLLGHSNVSTTTIYTHISQNR 280


>gi|326566125|gb|EGE16282.1| tyrosine recombinase XerD [Moraxella catarrhalis BC1]
          Length = 307

 Score =  153 bits (386), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 53/274 (19%), Positives = 98/274 (35%), Gaps = 23/274 (8%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---TP 130
            +SE+R +     L++ +R ++     ++  +  D          +R+ +   K    + 
Sbjct: 21  YLSEFRAAMLARGLSIATRNAYSQDV-RLCIRLSDMPVNLWQPSDVRNHLMCLKDAKKSE 79

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-- 188
            S  + L S+   F W +   Y   NPC S++ PK      +  +++++           
Sbjct: 80  RSIARALASLCQFFLWQIESGYREDNPCESIKTPKLGKTLPKTLSEQEVSSLLDAPDISS 139

Query: 189 --GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKL 244
             G + +   E L   GLR S+     ++HL       S+ T K   +  + L +  +  
Sbjct: 140 VRGLRDKAMLEVLYACGLRVSELTSLSLEHLNLTAGWLSV-TGKGNKMRLIPLGEYALSA 198

Query: 245 LA----------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292
           L           +     +  F+      M    F    K  A  AG+N   S H +R  
Sbjct: 199 LNEYLAVRGSLLIGKKDCQAVFLTEQGGYMTRHNFWHLIKKYALMAGINTAISPHTLRHA 258

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            AT   + GA    +    G   +   + YT  A
Sbjct: 259 FATHLVNHGADLRSVQLLLGHSDLSTTQIYTHVA 292


>gi|253732140|ref|ZP_04866305.1| site-specific recombinase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253724095|gb|EES92824.1| site-specific recombinase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
          Length = 295

 Score =  153 bits (386), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 44/275 (16%), Positives = 97/275 (35%), Gaps = 24/275 (8%)

Query: 74  LISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE------SR 126
           +I EY +       L+ N+  ++     +      +     I     +   E       +
Sbjct: 4   IIEEYLRFIQIEKGLSSNTIGAYRRDLKKYQDYMTEHHISHIDFIDRQLIQECLGHLIDQ 63

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             +  S  +F++++R   ++A+R++Y   +P + ++ PK   +       +++       
Sbjct: 64  GQSAKSIARFISTIRSFHQFAIREKYAVKDPTVLLDSPKYDKKLPDVLNVDEVLALLETP 123

Query: 187 SE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241
                 G + R   E L  +G+R S+     ++++   +  ++   K      V L D  
Sbjct: 124 DLNKINGYRDRTMLELLYATGMRVSELIHLELENVNLIMGFVRVFGKGDKERIVPLGDAV 183

Query: 242 MKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289
           ++ L                 E  F+N   + ++        K    KA + K+   H +
Sbjct: 184 IEYLTTYIETIRPQLLKKTVTEVLFLNMHGKPLSRQAIWKMIKQNGVKANIKKTLTPHTL 243

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           R   AT   + GA    +    G   +   + YT 
Sbjct: 244 RHSFATHLLENGADLRAVQEMLGHSDISTTQLYTH 278


>gi|320180132|gb|EFW55072.1| Putative integrase [Shigella boydii ATCC 9905]
          Length = 345

 Score =  153 bits (386), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 61/330 (18%), Positives = 108/330 (32%), Gaps = 29/330 (8%)

Query: 6   RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
           +LPP V   +        Y  K   R        ES  + A    L     K E   + R
Sbjct: 12  KLPPNVYPNK------YSYVWKPTSR--------ESVTLTAIKDGLAALWKKYEETVNNR 57

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
            +  T   L  ++  SA++  L+  ++  +  +  +++   G      I  +HIR  ++ 
Sbjct: 58  DRAMTFGRLWEKFLASAYYSDLSPRTQKDYLQHQKKLLAVFGKVPADSIKPEHIRRYMDK 117

Query: 126 RKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
           R   + + A    +SM  ++ W   + YV  NPC  V + K K       T ++ Q   S
Sbjct: 118 RGEQSKTQANHEKSSMSRVYSWGYERGYVKANPCAGVSKFKAKNRERYV-TDKEYQAVLS 176

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
                    +A E       R SD      + + N+   I+  KTG              
Sbjct: 177 VAPL--PVFIAMEIAYLCAARVSDVLSLKWEQIGNDGIFIQQGKTGKKQIKAWSPRLQAA 234

Query: 245 LAMTP--IGKETFFINNDKQKMNATQFSIWFKAKATKAG------VNKSAHGVRKFSATI 296
           +              N    +     F+  +     +AG       + + H + K     
Sbjct: 235 IEKAKQLPTSAYVISNQYGNRYMYKGFNEMWVEARNRAGKISGILTDFTFHDL-KAKGIS 293

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326
             +   ++ +     G KT  Q   Y +  
Sbjct: 294 DYE--GSSRDKQLFSGHKTEGQVLIYDRKV 321


>gi|242242770|ref|ZP_04797215.1| tyrosine recombinase XerD [Staphylococcus epidermidis W23144]
 gi|242233906|gb|EES36218.1| tyrosine recombinase XerD [Staphylococcus epidermidis W23144]
          Length = 295

 Score =  153 bits (386), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 47/276 (17%), Positives = 98/276 (35%), Gaps = 24/276 (8%)

Query: 73  WLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE------S 125
            +I EY         L+ N+  ++     +      D     I     +   E       
Sbjct: 3   NIIDEYLNFIQIEKGLSNNTIGAYRRDLKKYKDYLEDNKISHIDFIDRQIIQECLGHLID 62

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
              +  S  +F++++R   ++A+R++Y A +P + +E PK + +       +++      
Sbjct: 63  MGQSSKSLARFISTIRSFHQFALREKYAAKDPTVLIETPKYEKKLPDVLEIDEVIALLET 122

Query: 186 WSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240
                  G + R   E L  +G+R ++  +  V+ +   +  ++   K      V L D 
Sbjct: 123 PDLAKNNGYRDRTMLELLYATGMRVTEIIQLDVEDVNLMMGFVRVFGKGNKERIVPLGDT 182

Query: 241 FMKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHG 288
            ++ L                 +  F+N   + ++        K    KA +NK+   H 
Sbjct: 183 VIEYLTTYIETVRPQLLKQTTTQALFLNMHGKSLSRQGIWKIIKQYGLKANINKTLTPHT 242

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +R   AT   + GA    +    G   +   + YT 
Sbjct: 243 LRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTH 278


>gi|258648906|ref|ZP_05736375.1| tyrosine recombinase XerD [Prevotella tannerae ATCC 51259]
 gi|260850938|gb|EEX70807.1| tyrosine recombinase XerD [Prevotella tannerae ATCC 51259]
          Length = 296

 Score =  153 bits (386), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 45/268 (16%), Positives = 93/268 (34%), Gaps = 24/268 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRK-----SGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
             L+ N+R ++    +++I           + +          +        S  + L+ 
Sbjct: 15  QGLSDNTREAYMHDVEKLIDFLQQEGIDILNVKLDDLHRFTEALTDVGIMARSINRILSG 74

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLA 195
           +R  + + + + Y+  +P   +E PK         + E++    +       EG++    
Sbjct: 75  VRSFYHFLLLEGYLEADPTQLLESPKVGAHLPTVLSIEEVDALLAVIDQSTKEGARDHAI 134

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-ELPDGFMKLLA-------- 246
            E L   GLR S+ C   +  L  +   I+    G    +  +    +K L         
Sbjct: 135 IEILYSCGLRVSELCFLMLSDLYLDEGFIRIIGKGNKQRIVPISPRAVKELKNWLLIRHE 194

Query: 247 --MTPIGKETFFINN-DKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301
             +    ++  F++    + ++        K  A +AG+ K  S H +R   AT   + G
Sbjct: 195 INIKKGEEDYVFVSALRGKHLSRITVFHNLKVYAAEAGITKNISPHTLRHTFATHLLEGG 254

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRI 329
           A    +    G   +   + YT   DR 
Sbjct: 255 ANLRAIQMMLGHTDLSTTQVYT-NIDRR 281


>gi|229524404|ref|ZP_04413809.1| tyrosine recombinase XerD [Vibrio cholerae bv. albensis VL426]
 gi|229337985|gb|EEO03002.1| tyrosine recombinase XerD [Vibrio cholerae bv. albensis VL426]
          Length = 302

 Score =  153 bits (386), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 47/279 (16%), Positives = 108/279 (38%), Gaps = 24/279 (8%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVES 125
           + L+ ++  +  +   LA N+  S+ +   +++       YR         +  +S +  
Sbjct: 9   QGLVEQFLDTMWFERGLAENTVTSYRNDLSKLLEWMAQNQYRLDFISFAGLQEYQSWLSE 68

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           + + P+S  + L+++R LF++  R++  A +P   +  PK  T   +  ++  ++   S 
Sbjct: 69  QNYKPTSKARMLSAIRRLFQYLYREKVRADDPSALLISPKLPTRLPKDLSEAQVEALLSA 128

Query: 186 W----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240
                    + +   E L  +GLR ++     ++++      ++   K G    V + + 
Sbjct: 129 PDPQSPLELRDKAMLELLYATGLRVTELVSLTMENMSLRQGVVRVMGKGGKERLVPMGEN 188

Query: 241 FMKLLAMTPIGKETFFI----------NNDKQKMNATQFSIWFKAKATKAGVN---KSAH 287
            ++ +        +  +          ++  Q+M    F    K  A  AG++    S H
Sbjct: 189 AIEWIETFLQQGRSLLLGEQTSDIVFPSSRGQQMTRQTFWHRIKHYAVIAGIDVEKLSPH 248

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            +R   AT   + GA    +    G   +   + YT  A
Sbjct: 249 VLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVA 287


>gi|254374937|ref|ZP_04990418.1| site specific recombinase XerD [Francisella novicida GA99-3548]
 gi|151572656|gb|EDN38310.1| site specific recombinase XerD [Francisella novicida GA99-3548]
          Length = 292

 Score =  153 bits (386), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 44/265 (16%), Positives = 89/265 (33%), Gaps = 20/265 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKI---TTKHIRSGVESRKHTPSSAIQFLTSMR 141
             L+ N+  S+ +    +       D   +         S      ++  S  + ++++R
Sbjct: 16  HGLSQNTISSYRTDLKFLQNYFAKTDLISLDFEQLYAFISYRSKNGYSSRSNARMISTLR 75

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFE 197
             + W +       NP   +  PK   +  +  T+ D+++           G + +   E
Sbjct: 76  KFYAWLISTGQTNNNPTAKLTLPKLAKKLPKDMTETDVERLLQAPDMTEDVGIRDKAMLE 135

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDGFMKLLAMTPIGKET-- 254
            +  +GLR S+     +  +  NI  I+    G+    V + +  ++ L           
Sbjct: 136 LMYATGLRVSELVGLNIDDIDINIGVIQVMGKGSKERIVPIGEYALEYLQKYFAEARMSL 195

Query: 255 --------FFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATA 304
                    FI+   +++    F    K  A  AG+  + S H +R   AT   + GA  
Sbjct: 196 SKNFKEKAVFISKHTKRITRQSFWHRIKNYALIAGINTDISPHTLRHAFATHLLNHGADL 255

Query: 305 HELMATYGWKTVDQAETYTKGADRI 329
             +    G   V     YT  +   
Sbjct: 256 RSVQLLLGHSNVSTTTIYTHISQNR 280


>gi|15924487|ref|NP_372021.1| site-specific recombinase [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|15927078|ref|NP_374611.1| site-specific recombinase [Staphylococcus aureus subsp. aureus
           N315]
 gi|21283180|ref|NP_646268.1| site-specific recombinase [Staphylococcus aureus subsp. aureus MW2]
 gi|49483747|ref|YP_040971.1| integrase/recombinase [Staphylococcus aureus subsp. aureus MRSA252]
 gi|49486335|ref|YP_043556.1| integrase/recombinase [Staphylococcus aureus subsp. aureus MSSA476]
 gi|57650453|ref|YP_186382.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus COL]
 gi|87160007|ref|YP_494143.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88195302|ref|YP_500106.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|148267981|ref|YP_001246924.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus JH9]
 gi|150394046|ref|YP_001316721.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus JH1]
 gi|151221617|ref|YP_001332439.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|156979816|ref|YP_001442075.1| site-specific recombinase [Staphylococcus aureus subsp. aureus Mu3]
 gi|161509725|ref|YP_001575384.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221140082|ref|ZP_03564575.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus
           str. JKD6009]
 gi|253314865|ref|ZP_04838078.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus str.
           CF-Marseille]
 gi|253733255|ref|ZP_04867420.1| site-specific recombinase [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|255006283|ref|ZP_05144884.2| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|257425620|ref|ZP_05602044.1| tyrosine recombinase xerD [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257428281|ref|ZP_05604679.1| tyrosine recombinase xerD [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257430918|ref|ZP_05607298.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257433607|ref|ZP_05609965.1| tyrosine recombinase xerD [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257436520|ref|ZP_05612564.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           M876]
 gi|257793574|ref|ZP_05642553.1| tyrosine recombinase XerD [Staphylococcus aureus A9781]
 gi|258411126|ref|ZP_05681406.1| tyrosine recombinase xerD [Staphylococcus aureus A9763]
 gi|258419910|ref|ZP_05682871.1| tyrosine recombinase XerD [Staphylococcus aureus A9719]
 gi|258423151|ref|ZP_05686044.1| tyrosine recombinase XerD [Staphylococcus aureus A9635]
 gi|258437328|ref|ZP_05689312.1| tyrosine recombinase xerD [Staphylococcus aureus A9299]
 gi|258443533|ref|ZP_05691872.1| tyrosine recombinase xerD [Staphylococcus aureus A8115]
 gi|258446740|ref|ZP_05694894.1| tyrosine recombinase xerD [Staphylococcus aureus A6300]
 gi|258448655|ref|ZP_05696767.1| tyrosine recombinase xerD [Staphylococcus aureus A6224]
 gi|258451155|ref|ZP_05699190.1| tyrosine recombinase xerD [Staphylococcus aureus A5948]
 gi|258454271|ref|ZP_05702241.1| tyrosine recombinase xerD [Staphylococcus aureus A5937]
 gi|262049084|ref|ZP_06021961.1| site-specific recombinase [Staphylococcus aureus D30]
 gi|262051169|ref|ZP_06023393.1| site-specific recombinase [Staphylococcus aureus 930918-3]
 gi|269203124|ref|YP_003282393.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           ED98]
 gi|282892996|ref|ZP_06301230.1| tyrosine recombinase XerD [Staphylococcus aureus A8117]
 gi|282904077|ref|ZP_06311965.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           C160]
 gi|282905904|ref|ZP_06313759.1| tyrosine recombinase xerD [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282908814|ref|ZP_06316632.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282911133|ref|ZP_06318935.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282914302|ref|ZP_06322088.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus
           M899]
 gi|282919271|ref|ZP_06327006.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           C427]
 gi|282924596|ref|ZP_06332264.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           C101]
 gi|282924746|ref|ZP_06332413.1| tyrosine recombinase XerD [Staphylococcus aureus A9765]
 gi|282928967|ref|ZP_06336554.1| tyrosine recombinase XerD [Staphylococcus aureus A10102]
 gi|283958259|ref|ZP_06375710.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|284024557|ref|ZP_06378955.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus 132]
 gi|293503379|ref|ZP_06667226.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           58-424]
 gi|293510394|ref|ZP_06669100.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           M809]
 gi|293530933|ref|ZP_06671615.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus
           M1015]
 gi|294848527|ref|ZP_06789273.1| tyrosine recombinase XerD [Staphylococcus aureus A9754]
 gi|295406617|ref|ZP_06816422.1| tyrosine recombinase XerD [Staphylococcus aureus A8819]
 gi|296276353|ref|ZP_06858860.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus MR1]
 gi|297207783|ref|ZP_06924218.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|297245799|ref|ZP_06929664.1| tyrosine recombinase XerD [Staphylococcus aureus A8796]
 gi|297590959|ref|ZP_06949597.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus MN8]
 gi|300911864|ref|ZP_07129307.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|304380916|ref|ZP_07363576.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|60416269|sp|P0A0N9|XERD_STAAM RecName: Full=Tyrosine recombinase xerD
 gi|60416270|sp|P0A0P0|XERD_STAAN RecName: Full=Tyrosine recombinase xerD
 gi|60416271|sp|P0A0P1|XERD_STAAW RecName: Full=Tyrosine recombinase xerD
 gi|60416272|sp|P0A0P2|XERD_STAAU RecName: Full=Tyrosine recombinase xerD
 gi|81649271|sp|Q6G967|XERD_STAAS RecName: Full=Tyrosine recombinase xerD
 gi|81651036|sp|Q6GGK1|XERD_STAAR RecName: Full=Tyrosine recombinase xerD
 gi|81694449|sp|Q5HFS5|XERD_STAAC RecName: Full=Tyrosine recombinase xerD
 gi|3747042|gb|AAC64162.1| tyrosine recombinase XerD [Staphylococcus aureus]
 gi|13701296|dbj|BAB42590.1| site-specific recombinase [Staphylococcus aureus subsp. aureus
           N315]
 gi|14247268|dbj|BAB57659.1| site-specific recombinase [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|21204620|dbj|BAB95316.1| site-specific recombinase [Staphylococcus aureus subsp. aureus MW2]
 gi|49241876|emb|CAG40569.1| integrase/recombinase [Staphylococcus aureus subsp. aureus MRSA252]
 gi|49244778|emb|CAG43214.1| integrase/recombinase [Staphylococcus aureus subsp. aureus MSSA476]
 gi|57284639|gb|AAW36733.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus COL]
 gi|87125981|gb|ABD20495.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87202860|gb|ABD30670.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|147741050|gb|ABQ49348.1| tyrosine recombinase XerD subunit [Staphylococcus aureus subsp.
           aureus JH9]
 gi|149946498|gb|ABR52434.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus JH1]
 gi|150374417|dbj|BAF67677.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|156721951|dbj|BAF78368.1| site-specific recombinase [Staphylococcus aureus subsp. aureus Mu3]
 gi|160368534|gb|ABX29505.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253728795|gb|EES97524.1| site-specific recombinase [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|257271314|gb|EEV03460.1| tyrosine recombinase xerD [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257275122|gb|EEV06609.1| tyrosine recombinase xerD [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257278348|gb|EEV08984.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257281700|gb|EEV11837.1| tyrosine recombinase xerD [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257283871|gb|EEV13994.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           M876]
 gi|257787546|gb|EEV25886.1| tyrosine recombinase XerD [Staphylococcus aureus A9781]
 gi|257840276|gb|EEV64740.1| tyrosine recombinase xerD [Staphylococcus aureus A9763]
 gi|257844095|gb|EEV68483.1| tyrosine recombinase XerD [Staphylococcus aureus A9719]
 gi|257846601|gb|EEV70622.1| tyrosine recombinase XerD [Staphylococcus aureus A9635]
 gi|257848533|gb|EEV72521.1| tyrosine recombinase xerD [Staphylococcus aureus A9299]
 gi|257850939|gb|EEV74882.1| tyrosine recombinase xerD [Staphylococcus aureus A8115]
 gi|257854315|gb|EEV77264.1| tyrosine recombinase xerD [Staphylococcus aureus A6300]
 gi|257857933|gb|EEV80822.1| tyrosine recombinase xerD [Staphylococcus aureus A6224]
 gi|257861210|gb|EEV84023.1| tyrosine recombinase xerD [Staphylococcus aureus A5948]
 gi|257863550|gb|EEV86308.1| tyrosine recombinase xerD [Staphylococcus aureus A5937]
 gi|259160806|gb|EEW45826.1| site-specific recombinase [Staphylococcus aureus 930918-3]
 gi|259162753|gb|EEW47318.1| site-specific recombinase [Staphylococcus aureus D30]
 gi|262075414|gb|ACY11387.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           ED98]
 gi|269940989|emb|CBI49373.1| integrase/recombinase [Staphylococcus aureus subsp. aureus TW20]
 gi|282313431|gb|EFB43826.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           C101]
 gi|282317081|gb|EFB47455.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           C427]
 gi|282321483|gb|EFB51808.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus
           M899]
 gi|282324828|gb|EFB55138.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282327078|gb|EFB57373.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282331196|gb|EFB60710.1| tyrosine recombinase xerD [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282589374|gb|EFB94465.1| tyrosine recombinase XerD [Staphylococcus aureus A10102]
 gi|282592753|gb|EFB97759.1| tyrosine recombinase XerD [Staphylococcus aureus A9765]
 gi|282595695|gb|EFC00659.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           C160]
 gi|282764314|gb|EFC04440.1| tyrosine recombinase XerD [Staphylococcus aureus A8117]
 gi|283470776|emb|CAQ49987.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           ST398]
 gi|283790408|gb|EFC29225.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|285817178|gb|ADC37665.1| Site-specific recombinase XerD [Staphylococcus aureus 04-02981]
 gi|290920201|gb|EFD97267.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus
           M1015]
 gi|291095045|gb|EFE25310.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           58-424]
 gi|291466758|gb|EFF09278.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           M809]
 gi|294824553|gb|EFG40976.1| tyrosine recombinase XerD [Staphylococcus aureus A9754]
 gi|294968364|gb|EFG44388.1| tyrosine recombinase XerD [Staphylococcus aureus A8819]
 gi|296887800|gb|EFH26698.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|297177450|gb|EFH36702.1| tyrosine recombinase XerD [Staphylococcus aureus A8796]
 gi|297575845|gb|EFH94561.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus MN8]
 gi|298694781|gb|ADI98003.1| site-specific recombinase [Staphylococcus aureus subsp. aureus
           ED133]
 gi|300886110|gb|EFK81312.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|302751329|gb|ADL65506.1| site-specific recombinase XerD [Staphylococcus aureus subsp. aureus
           str. JKD6008]
 gi|304340643|gb|EFM06577.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|312438035|gb|ADQ77106.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           TCH60]
 gi|312829886|emb|CBX34728.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           ECT-R 2]
 gi|315129770|gb|EFT85760.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus
           CGS03]
 gi|315195394|gb|EFU25781.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus
           CGS00]
 gi|315198812|gb|EFU29140.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus
           CGS01]
 gi|320140619|gb|EFW32473.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           MRSA131]
 gi|320144155|gb|EFW35924.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           MRSA177]
 gi|329314175|gb|AEB88588.1| Tyrosine recombinase xerD [Staphylococcus aureus subsp. aureus
           T0131]
 gi|329725291|gb|EGG61778.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           21189]
 gi|329727344|gb|EGG63800.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           21172]
          Length = 295

 Score =  153 bits (386), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 45/275 (16%), Positives = 98/275 (35%), Gaps = 24/275 (8%)

Query: 74  LISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE------SR 126
           +I EY +       L+ N+  ++     +      +     I     +   E       +
Sbjct: 4   IIEEYLRFIQIEKGLSSNTIGAYRRDLKKYQDYMTEHHISHIDFIDRQLIQECLGHLIDQ 63

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             +  S  +F++++R   ++A+R++Y A +P + ++ PK   +       +++       
Sbjct: 64  GQSAKSIARFISTIRSFHQFAIREKYAAKDPTVLLDSPKYDKKLPDVLNVDEVLALLETP 123

Query: 187 SE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241
                 G + R   E L  +G+R S+     ++++   +  ++   K      V L D  
Sbjct: 124 DLNKINGYRDRTMLELLYATGMRVSELIHLELENVNLIMGFVRVFGKGDKERIVPLGDAV 183

Query: 242 MKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289
           ++ L                 E  F+N   + ++        K    KA + K+   H +
Sbjct: 184 IEYLTTYIETIRPQLLKKTVTEVLFLNMHGKPLSRQAIWKMIKQNGVKANIKKTLTPHTL 243

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           R   AT   + GA    +    G   +   + YT 
Sbjct: 244 RHSFATHLLENGADLRAVQEMLGHSDISTTQLYTH 278


>gi|323343537|ref|ZP_08083764.1| integrase/recombinase XerD [Prevotella oralis ATCC 33269]
 gi|323095356|gb|EFZ37930.1| integrase/recombinase XerD [Prevotella oralis ATCC 33269]
          Length = 317

 Score =  153 bits (386), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 45/275 (16%), Positives = 95/275 (34%), Gaps = 23/275 (8%)

Query: 73  WLISEYRKSAHW-GSLAVNSRISFESYFDQII-----RKSGDFDYRKITTKHIRSGVESR 126
            ++  Y +      + + ++  +++     +I     +    F+ +    +     +   
Sbjct: 12  DVVKSYVRYLKLERNYSPHTLEAYQHDLSWLIGYCAQQDLNVFELKLADLERFAVQIHEH 71

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
              P++  + L+ +R  +++ V   Y+A +P   +E P          +  ++   +   
Sbjct: 72  GVGPATQARILSGVRSFYRFLVLDGYIAADPTELLESPHIGEHLPEVLSAAEVDMLEDSI 131

Query: 187 S----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241
                EG + +   E L   GLR S+     +  L      ++   K      V +    
Sbjct: 132 DLSKWEGQRNKAIIEMLFSCGLRVSELVNLKLSDLYIEEEYVRVLGKGDKERLVPISPKA 191

Query: 242 ----------MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289
                       L+ + P   +  F+N     +  T   I  K +A  AG+ K  S H +
Sbjct: 192 IKELKLWFIDRNLMQIKPGEIDFVFLNRRGSHLTRTMILIMIKRQAEAAGIRKTISPHTL 251

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           R   AT     GA    +    G +++   E YT 
Sbjct: 252 RHSFATELLKGGADLRAIQEMLGHESIGTTEIYTH 286


>gi|89890506|ref|ZP_01202016.1| tyrosine recombinase XerD [Flavobacteria bacterium BBFL7]
 gi|89517421|gb|EAS20078.1| tyrosine recombinase XerD [Flavobacteria bacterium BBFL7]
          Length = 298

 Score =  153 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 53/287 (18%), Positives = 99/287 (34%), Gaps = 28/287 (9%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYF----DQIIRKSGDFDYRKITTKHIRSGVES 125
            + +I ++   +    SLA N+  ++        + ++         +I +  +R  +  
Sbjct: 3   WEHIIKDFLTYSRLERSLADNTLKAYSRDLHKLNNWLLANDISISPTEINSNILRDYIYE 62

Query: 126 RKHTP--SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
                   S  + L+S++V F + + ++Y   NP   +E PK   +     + +++    
Sbjct: 63  LAKNVSSRSQARALSSLKVFFNYLILEDYRKDNPLELIESPKIGRKLPDTLSTQEIDALI 122

Query: 184 SF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH--LQNNIFSIKTQKTGTIITVEL 237
           +        G + R   E L   GLR S+     +     Q     + T K      + +
Sbjct: 123 NSIDRSTPHGERNRAILETLYGCGLRVSELTTLKISDLFFQEGFIKV-TGKGDKQRFIPI 181

Query: 238 PD-----------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284
            D                L + P   +T F+N     +         K    KAG+ K  
Sbjct: 182 GDFTIKVINLYINEIRPHLPIKPQHTDTVFLNRRGAGLTRAMIFHIIKELKVKAGITKKI 241

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           S H  R   AT   + GA    +    G +++   E Y    DR  L
Sbjct: 242 SPHTFRHSFATHLLENGADLRSIQMMLGHESITTTEIYMH-VDRAHL 287


>gi|62258790|gb|AAX77820.1| unknown protein [synthetic construct]
          Length = 327

 Score =  153 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 48/284 (16%), Positives = 94/284 (33%), Gaps = 21/284 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKI---TTKHIRSGVESRKHTPSSAIQFLTSMR 141
             L+ N+  S+ +    +       D   +         S      ++  S  + ++++R
Sbjct: 42  HGLSQNTISSYRTDLKFLQNYFAKTDLISLDFEQLYAFISYRSKNGYSSHSNARMISTLR 101

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFE 197
             + W +       NP   +  PK   +  +  T+ D+++           G + +   E
Sbjct: 102 KFYAWLISTGQTNNNPTAKLTLPKLAKKLPKDMTETDVERLLQAPDMTEDVGIRDKAMLE 161

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDGFMKLLAMTPIGKE--- 253
            +  +GLR S+     +  +  NI  I+    G+    V + +  ++ L           
Sbjct: 162 LMYATGLRVSELVGLNIDDIDINIGVIQVMGKGSKERIVPIGEYALEYLQKYFAEARRSL 221

Query: 254 -------TFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATA 304
                    FI+   +++    F    K  A  AG+  + S H +R   AT   + GA  
Sbjct: 222 SENFKEKAVFISKHAKRITRQSFWHRIKNYALIAGINTDISPHTLRHAFATHLLNHGADL 281

Query: 305 HELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
             +    G   V     YT    + RL     +        D P
Sbjct: 282 RSVQLLLGHSNVSTTTIYTH-ISQNRLQEIYQKHHPRGYPYDVP 324


>gi|93004888|ref|YP_579325.1| tyrosine recombinase XerD [Psychrobacter cryohalolentis K5]
 gi|92392566|gb|ABE73841.1| Tyrosine recombinase XerD [Psychrobacter cryohalolentis K5]
          Length = 312

 Score =  153 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 51/276 (18%), Positives = 95/276 (34%), Gaps = 22/276 (7%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFD--QIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
             I+E+R++     LA  +R ++       ++   +    ++     H  S +     TP
Sbjct: 22  AYITEFRQAMLARGLATRTRNAYVRDLRSCELTNHTALTRWQPEDVLHCLSILTQDGKTP 81

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS--- 187
            +  + L+S+R  + W +       NPC  ++ PK      +   + D+    +      
Sbjct: 82  RTQARMLSSLRQFYLWMIASNLREDNPCERIKSPKLGRPLPKDLAEADVDNLLAAPDSST 141

Query: 188 -EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLL 245
             G + +   E L   GLR S+     ++ +  N   ++ T K      V L +     L
Sbjct: 142 ALGLRDKAMLEVLYACGLRVSELVNLSLEQVNLNSGWLQITGKGNKTRLVPLGEYAADAL 201

Query: 246 -------------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290
                         +     +  F+      M    F    K  A  A ++K  S H +R
Sbjct: 202 EDYLTHGRGDLIAHLKAGNCQAVFLTAQGGYMTRQNFWYLLKKYAKVASIDKDLSPHTLR 261

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
              AT   + GA    +    G   +   + YT  A
Sbjct: 262 HAFATHLLNHGADLRSVQLLLGHSDLSTTQIYTHVA 297


>gi|117620205|ref|YP_857765.1| tyrosine recombinase XerD [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
 gi|117561612|gb|ABK38560.1| tyrosine recombinase XerD [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
          Length = 299

 Score =  153 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 43/274 (15%), Positives = 97/274 (35%), Gaps = 22/274 (8%)

Query: 85  GSLAVNSRISFESYFDQII----RKSGDFDYRKITT-KHIRSGVESRKHTPSSAIQFLTS 139
             L+ N+  S+ +  ++       + G      +   +H  +    ++   SS  +FL++
Sbjct: 21  RGLSDNTVSSYRTDLEKFALWLDEQGGSLLLAGLDDIQHYLAWRVDQQFAASSTARFLSA 80

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195
           +R  +++  R++  + +P + +E PK   +     ++ +++              + +  
Sbjct: 81  LRRFYQYLNREKLRSDDPTVLLEGPKLPKKLPSDLSEAEVEALLQAPLVDEPLELRDKAM 140

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFMKLLAMTPIGKET 254
            E L  +GLR S+      +H+      ++    G     V + +  +  L        T
Sbjct: 141 LELLYATGLRVSELVGLTAEHVSLRQGLVRVVGKGNKERLVPMGEEAVHWLERYYREART 200

Query: 255 FFI----------NNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGA 302
             +          +   + M    F    K  A +AG+    S H +R   AT   + GA
Sbjct: 201 LLLGGTSSDVVFPSKQARMMTRQTFWHRIKLYAQRAGIQGELSPHTLRHAFATHLLNHGA 260

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
               +    G   +   + YT  A+     +   
Sbjct: 261 DLRVVQMLLGHADLSTTQIYTHVANERLKALHGQ 294


>gi|57866964|ref|YP_188637.1| tyrosine recombinase XerD [Staphylococcus epidermidis RP62A]
 gi|293366542|ref|ZP_06613219.1| integrase/recombinase XerD [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|81674519|sp|Q5HP53|XERD_STAEQ RecName: Full=Tyrosine recombinase xerD
 gi|57637622|gb|AAW54410.1| tyrosine recombinase XerD [Staphylococcus epidermidis RP62A]
 gi|291319311|gb|EFE59680.1| integrase/recombinase XerD [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329725406|gb|EGG61889.1| tyrosine recombinase XerD [Staphylococcus epidermidis VCU144]
 gi|329735284|gb|EGG71576.1| tyrosine recombinase XerD [Staphylococcus epidermidis VCU045]
          Length = 295

 Score =  153 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 47/275 (17%), Positives = 98/275 (35%), Gaps = 24/275 (8%)

Query: 74  LISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE------SR 126
           +I EY         L+ N+  ++     +      D     I     +   E        
Sbjct: 4   IIEEYLNFIQIEKGLSNNTIGAYRRDLKKYKDYLEDNKISHIDFIDRQIIQECLGHLIDM 63

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             +  S  +F++++R   ++A+R++Y A +P + +E PK + +       +++       
Sbjct: 64  GQSSKSLARFISTIRSFHQFALREKYAAKDPTVLIETPKYEKKLPDVLEIDEVIALLETP 123

Query: 187 SE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241
                 G + R   E L  +G+R ++  +  V+ +   +  ++   K      V L D  
Sbjct: 124 DLTKNNGYRDRTMLELLYATGMRVTEIIQLDVEDVNLMMGFVRVFGKGNKERIVPLGDTV 183

Query: 242 MKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289
           ++ L                 +  F+N   + ++        K    KA +NK+   H +
Sbjct: 184 IEYLTTYIETVRPQLLKQTTTQALFLNMHGKSLSRQGIWKIIKQYGLKANINKTLTPHTL 243

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           R   AT   + GA    +    G   +   + YT 
Sbjct: 244 RHSFATHLLENGADLRAVQEMLGHSDISTTQLYTH 278


>gi|296114058|ref|YP_003627996.1| tyrosine recombinase XerD [Moraxella catarrhalis RH4]
 gi|295921752|gb|ADG62103.1| tyrosine recombinase XerD [Moraxella catarrhalis RH4]
 gi|326559455|gb|EGE09878.1| tyrosine recombinase XerD [Moraxella catarrhalis 7169]
 gi|326561283|gb|EGE11642.1| tyrosine recombinase XerD [Moraxella catarrhalis 46P47B1]
 gi|326565171|gb|EGE15362.1| tyrosine recombinase XerD [Moraxella catarrhalis 103P14B1]
 gi|326567828|gb|EGE17932.1| tyrosine recombinase XerD [Moraxella catarrhalis 12P80B1]
 gi|326568170|gb|EGE18252.1| tyrosine recombinase XerD [Moraxella catarrhalis BC8]
 gi|326572813|gb|EGE22798.1| tyrosine recombinase XerD [Moraxella catarrhalis CO72]
 gi|326573743|gb|EGE23701.1| tyrosine recombinase XerD [Moraxella catarrhalis O35E]
 gi|326574632|gb|EGE24568.1| tyrosine recombinase XerD [Moraxella catarrhalis 101P30B1]
          Length = 307

 Score =  152 bits (385), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 53/274 (19%), Positives = 98/274 (35%), Gaps = 23/274 (8%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---TP 130
            +SE+R +     L++ +R ++     ++  +  D          +R+ +   K    + 
Sbjct: 21  YLSEFRAAMLARGLSIATRNAYSQDV-RLCIRLSDTPVNLWQPSDVRNHLMCLKDAKKSE 79

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-- 188
            S  + L S+   F W +   Y   NPC S++ PK      +  +++++           
Sbjct: 80  RSIARALASLCQFFLWQIESGYREDNPCESIKTPKLGKTLPKTLSEQEVSSLLDAPDISS 139

Query: 189 --GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKL 244
             G + +   E L   GLR S+     ++HL       S+ T K   +  + L +  +  
Sbjct: 140 VRGLRDKAMLEVLYACGLRVSELTSLSLEHLNLTAGWLSV-TGKGNKMRLIPLGEYALSA 198

Query: 245 LA----------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292
           L           +     +  F+      M    F    K  A  AG+N   S H +R  
Sbjct: 199 LNEYLAVRGSLLIGKKDCQAVFLTEQGGYMTRHNFWHLIKKYALMAGINTAISPHTLRHA 258

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            AT   + GA    +    G   +   + YT  A
Sbjct: 259 FATHLVNHGADLRSVQLLLGHSDLSTTQIYTHVA 292


>gi|261879004|ref|ZP_06005431.1| integrase/recombinase XerD [Prevotella bergensis DSM 17361]
 gi|270334388|gb|EFA45174.1| integrase/recombinase XerD [Prevotella bergensis DSM 17361]
          Length = 306

 Score =  152 bits (385), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 49/262 (18%), Positives = 93/262 (35%), Gaps = 22/262 (8%)

Query: 85  GSLAVNSRISFESYFDQIIR-----KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
            S + N+  +++   ++++          FD +    +   + +        S  + L+ 
Sbjct: 21  RSYSPNTLDAYQRDLNKLLDFLRKVDVAPFDVKLEDLQQFAASLHEHGIGSKSQARILSG 80

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLA 195
           +R  +++ V   Y+ ++P   +E P          T +++   +        EG + R  
Sbjct: 81  VRAFYRFLVLDGYLEVDPTELLESPHLPKHLPEYLTTDEVDMLQDSIDLSTNEGHRNRAI 140

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFMKLLA-------- 246
            E L   GLR S+     +  L      I+    G     V + D  ++ L         
Sbjct: 141 IEVLFSCGLRVSELTNLKLSDLFLEEQFIRVMGKGNKERLVPISDRAIEELGYWFDDRRQ 200

Query: 247 --MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302
             + P  ++  F+N     +  T   I  K +A  AG+ K  S H +R   AT     GA
Sbjct: 201 MIIKPGEEDYVFLNRRGHHLTRTMILIMIKRQAEAAGIKKTISPHTLRHSFATALLRGGA 260

Query: 303 TAHELMATYGWKTVDQAETYTK 324
               +    G   +   E YT 
Sbjct: 261 DLRVIQDLLGHSNIGTTEMYTH 282


>gi|254448186|ref|ZP_05061649.1| tyrosine recombinase XerD [gamma proteobacterium HTCC5015]
 gi|198262312|gb|EDY86594.1| tyrosine recombinase XerD [gamma proteobacterium HTCC5015]
          Length = 311

 Score =  152 bits (385), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 52/269 (19%), Positives = 96/269 (35%), Gaps = 24/269 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVESRKHTPSSAIQFLTS 139
             L+ N+  S+ S   Q+    GD     +       +   +   S++   SSA + L+S
Sbjct: 31  HGLSDNTLGSYGSDLRQLSSFLGDKGSHLLQADRGALQDFLAFRLSKRGKASSAARLLSS 90

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK----SFWSEGSQPRLA 195
           +R  +++ V +  +  +P   +E PK      +  ++E +++      +    G + RL 
Sbjct: 91  LRRFYRYQVSEGRLQEDPTALLESPKLGVRLPKSISEEHIERLLRAPDTHTDLGLRDRLM 150

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDG------------FM 242
            E L  SGLR ++     ++ +  +   +K    G     V + D               
Sbjct: 151 LEMLYASGLRVTELVTLRLEQIDAHHGIVKVMGKGRKERLVPIGDEALAWLGEYLQSARP 210

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA--GVNKSAHGVRKFSATISADA 300
            LL          F+      M         K  A +A  G + S H +R   AT   + 
Sbjct: 211 DLLKGRDTTTPFLFVTRRGGGMTRQTAWNVIKKYAQQAHLGGDLSPHTLRHAFATHLLNH 270

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRI 329
           GA    +    G   +   + YT  A+  
Sbjct: 271 GADLRAVQMLLGHSDLSTTQIYTHVANER 299


>gi|16801135|ref|NP_471403.1| hypothetical protein lin2069 [Listeria innocua Clip11262]
 gi|34222947|sp|Q92A53|XERD_LISIN RecName: Full=Tyrosine recombinase xerD
 gi|16414570|emb|CAC97299.1| lin2069 [Listeria innocua Clip11262]
 gi|313618111|gb|EFR90213.1| tyrosine recombinase XerD [Listeria innocua FSL S4-378]
 gi|313623100|gb|EFR93374.1| tyrosine recombinase XerD [Listeria innocua FSL J1-023]
          Length = 297

 Score =  152 bits (385), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 49/288 (17%), Positives = 104/288 (36%), Gaps = 33/288 (11%)

Query: 73  WLISEYRKSAHW----GSLAVNSRISFES-------YFDQIIRKSGDFDYRKITTKHIRS 121
            LI ++    H+      L+ N+  ++E        Y D     +      +       +
Sbjct: 3   DLIDDFL---HFLIVEKGLSANTIKAYERDLHYFVSYMDTSRTLTDPDTLERNDIVGFMA 59

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
                  +P S  +++ S+R  F + +    ++ +P + +E PK+     +    +D+++
Sbjct: 60  FARKEGKSPRSVARYIASLRSFFHYLMHDGKMSHDPMIQIETPKQAQSLPKVLNLDDVEK 119

Query: 182 FK----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE 236
                 +    G + +   E L  +GLR ++  +  +  L   +  I+T  K      + 
Sbjct: 120 LLSSSDTSTPLGLRDQAMLEILYATGLRVTELVKLKMDDLHLQMGFIQTIGKGDKERIIP 179

Query: 237 L-----------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284
           L            +     L       +  F+N+  Q +    F    K  A ++G+ K 
Sbjct: 180 LGKTATTVLEQYLEEARPKLRRPKYRNDFVFLNHHGQGLTRQGFWKILKGIAKESGIEKP 239

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            + H +R   AT   + GA    +    G   +   + YT    ++RL
Sbjct: 240 ITPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTH-VTKLRL 286


>gi|301063083|ref|ZP_07203644.1| tyrosine recombinase XerD [delta proteobacterium NaphS2]
 gi|300442803|gb|EFK07007.1| tyrosine recombinase XerD [delta proteobacterium NaphS2]
          Length = 293

 Score =  152 bits (385), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 49/281 (17%), Positives = 99/281 (35%), Gaps = 23/281 (8%)

Query: 73  WLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKIT--TKHIRSGVESRKH- 128
            LI E+         LA N+  ++     + +    + +   +      IR  + +  H 
Sbjct: 3   DLIDEFITYLRVERGLAENTVHAYSRDLIRFVAYLENRNITPVDCSRTAIRDYLGTLTHE 62

Query: 129 -TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK---- 183
            +  S  + +++++  +++ V +  +  NP   VE P+ + +     + +++++      
Sbjct: 63  LSKRSRARNVSAIKTFYRFLVSEGKMEENPARLVETPRIQQKLPDILSVDEVERLLLQPD 122

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFM 242
                G + R   E L  +GLR S+  R  +  +      +K   K      V   +   
Sbjct: 123 GATPIGQRDRAMLELLYATGLRVSELVRLRLLDVNMEAGFVKALGKGSKERMVPFGEKAR 182

Query: 243 KLLAMTPIGK----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290
           + L                    F+N   + +    F    K     AG+ K    HG+R
Sbjct: 183 QALKTYLSDGRPALLKEGHPPYLFLNFRGKPLTRQGFWKIIKNHGIMAGIKKNIKPHGLR 242

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
              A+   +AGA    +    G   +   + YT    R RL
Sbjct: 243 HSFASHLLEAGADLRSVQLMLGHADITTTQIYTH-VTRERL 282


>gi|254284183|ref|ZP_04959151.1| tyrosine recombinase XerD [gamma proteobacterium NOR51-B]
 gi|219680386|gb|EED36735.1| tyrosine recombinase XerD [gamma proteobacterium NOR51-B]
          Length = 299

 Score =  152 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 46/276 (16%), Positives = 99/276 (35%), Gaps = 24/276 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH------IRSGVESRKHTPSSAIQFLT 138
             L+ N+  ++     Q      +     +            +      H+  SA +FL+
Sbjct: 20  RGLSANTLAAYRRDLRQFADFLDERGIASLKAADAGALQGFLASRLKSGHSNRSAARFLS 79

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194
           ++R  +++ +R+  +  +P   ++ P+      +  ++ D+++  +          + R 
Sbjct: 80  TLRGFYRYHLRENRIDRDPTQFIDSPRLGRSLPKSISEADVERLLAAPNVEDPIDFRDRT 139

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIG-- 251
             E L   GLR ++     V  L  N   ++   K      + + +  +  +     G  
Sbjct: 140 MLELLYACGLRVTELTGLQVSQLSLNQGVVRVVGKGDKERLIPIGEEALSWVQQFLAGPR 199

Query: 252 --------KETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAG 301
                    E  F +N   +M    F    K  A +AG+  + S H +R   AT   + G
Sbjct: 200 QVLLKERMSEVLFPSNRGGQMTRQTFWYRIKLHAKRAGIEAHLSPHTLRHAFATHLINHG 259

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
           A    +    G   +   + YT  A R R+   +++
Sbjct: 260 ADLRVVQMLLGHSDLTTTQIYTHVA-RHRMQQLHAQ 294


>gi|229822894|ref|ZP_04448964.1| hypothetical protein GCWU000282_00184 [Catonella morbi ATCC 51271]
 gi|229787707|gb|EEP23821.1| hypothetical protein GCWU000282_00184 [Catonella morbi ATCC 51271]
          Length = 302

 Score =  152 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 44/271 (16%), Positives = 90/271 (33%), Gaps = 26/271 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHTPSSAI---QFLT 138
            + + N+  S+     +        G      I    +R+ +        +A    + L+
Sbjct: 20  MNRSANTIQSYGRDLAKFQAYLTEQGIDKVEAIDEVTVRAFLAKLSQDAYAASSTSRMLS 79

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRL 194
           S++  F +  ++  +  NP   V RPK+     +  T  +++            G + R 
Sbjct: 80  SLKQFFLFLRKEGILETNPMSLVHRPKQGRHLPKVLTASEIEALLQAPDTSSPHGLRDRA 139

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM------ 247
            FE +  +GLR ++  +  ++ L   +  I+T  K      V L D  ++ L        
Sbjct: 140 IFELMYATGLRVTELVQLKLEDLHLELGFIQTLGKGDKERLVPLIDEAIEWLEAYLEQVR 199

Query: 248 -------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISA 298
                       +  F+    +                 AG+ +  S H +R   AT   
Sbjct: 200 PSFLRLAGSASPQEVFLTERGKAFTRQGIWKNLNKYVALAGIKQTVSPHMLRHSFATHLL 259

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRI 329
           + GA    +    G   +   + YT  + + 
Sbjct: 260 ENGADLRMVQELLGHADISTTQIYTHISTQR 290


>gi|27468099|ref|NP_764736.1| site-specific recombinase [Staphylococcus epidermidis ATCC 12228]
 gi|251810914|ref|ZP_04825387.1| integrase/recombinase XerD [Staphylococcus epidermidis BCM-HMP0060]
 gi|282876077|ref|ZP_06284944.1| tyrosine recombinase XerD [Staphylococcus epidermidis SK135]
 gi|34222791|sp|Q7ZAJ2|XERD_STAES RecName: Full=Tyrosine recombinase xerD
 gi|27315645|gb|AAO04780.1|AE016748_14 site-specific recombinase [Staphylococcus epidermidis ATCC 12228]
 gi|251805594|gb|EES58251.1| integrase/recombinase XerD [Staphylococcus epidermidis BCM-HMP0060]
 gi|281295102|gb|EFA87629.1| tyrosine recombinase XerD [Staphylococcus epidermidis SK135]
 gi|329737213|gb|EGG73467.1| tyrosine recombinase XerD [Staphylococcus epidermidis VCU028]
          Length = 295

 Score =  152 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 47/275 (17%), Positives = 98/275 (35%), Gaps = 24/275 (8%)

Query: 74  LISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE------SR 126
           +I EY         L+ N+  ++     +      D     I     +   E        
Sbjct: 4   IIEEYLNFIQIEKGLSNNTIGAYRRDLKKYKDYLEDNKISHIDFIDRQIIQECLGHLIDM 63

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             +  S  +F++++R   ++A+R++Y A +P + +E PK + +       +++       
Sbjct: 64  GQSSKSLARFISTIRSFHQFALREKYAAKDPTVLIETPKYEKKLPDVLEIDEVIALLETP 123

Query: 187 SE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241
                 G + R   E L  +G+R ++  +  V+ +   +  ++   K      V L D  
Sbjct: 124 DLTKNNGYRDRTMLELLYATGMRVTEIIQLDVEDVNLIMGFVRVFGKGNKERIVPLGDTV 183

Query: 242 MKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289
           ++ L                 +  F+N   + ++        K    KA +NK+   H +
Sbjct: 184 IEYLTTYIETVRPQLLKQTTTQALFLNMHGKSLSRQGIWKIIKQYGLKANINKTLTPHTL 243

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           R   AT   + GA    +    G   +   + YT 
Sbjct: 244 RHSFATHLLENGADLRAVQEMLGHSDISTTQLYTH 278


>gi|315653500|ref|ZP_07906421.1| integrase/recombinase XerD [Lactobacillus iners ATCC 55195]
 gi|315489191|gb|EFU78832.1| integrase/recombinase XerD [Lactobacillus iners ATCC 55195]
          Length = 297

 Score =  152 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 46/274 (16%), Positives = 100/274 (36%), Gaps = 25/274 (9%)

Query: 75  ISEYRKSAH-WGSLAVNSRISFESYFDQ---IIRKSG--DFDYRKITTKHIRSGVESRKH 128
           + +Y + A     L+ N+ +S+     +    ++  G   ++   +      +    +  
Sbjct: 6   LEDYLRFAQIERGLSNNTLLSYRQDLLEYFSFLKSLGITTWEVDALIIDSFLAQERDKGK 65

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF--- 185
             +S  + L+S+R  ++W  RQ  +  +P L ++ PK++       +  ++ +  +    
Sbjct: 66  AIASISRMLSSLRKFYQWLFRQNLIKQDPLLRIDSPKKEKRLPTALSTTEVTKLINMPDT 125

Query: 186 -WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMK 243
               G + R   E L  +G+R S+        +   +  IK   K      + + +  M 
Sbjct: 126 TTDLGIRDRAILETLYATGMRVSEVINLNEDSIHEELHLIKVFGKGSKQRLIPISNVAMS 185

Query: 244 LLAMTPIG------------KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289
            +    I             ++  F+N+   K+         K     AG+NK  + H +
Sbjct: 186 WIKKYQITVRNKTLLESGKFEKAIFLNSRGGKITRQAVWQMIKRYCQLAGINKNVTPHTL 245

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           R   AT   + GA    +    G   +   + YT
Sbjct: 246 RHTFATHLLENGADLRIVQEILGHSDISTTQIYT 279


>gi|289209264|ref|YP_003461330.1| tyrosine recombinase XerD [Thioalkalivibrio sp. K90mix]
 gi|288944895|gb|ADC72594.1| tyrosine recombinase XerD [Thioalkalivibrio sp. K90mix]
          Length = 301

 Score =  152 bits (384), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 48/275 (17%), Positives = 89/275 (32%), Gaps = 24/275 (8%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRKITTK-----HIRSGVESRKHTPSSAIQFLTSM 140
            L+ ++  ++    + + R                     S        P S  + L+S+
Sbjct: 23  GLSDHTLAAYRRDLEALARWLHGRGVALEAASSADLLAFVSARMQAGARPKSITRALSSI 82

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FWSEGSQPRLAF 196
           R  +++ V Q     +P   +E P+         ++  +    +        G + R   
Sbjct: 83  RRFYRYLVHQGEREDDPSAGIESPRAGRPLPDSLSETQVNALLAAPELHTEVGLRDRAML 142

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAMTPIGK--- 252
           E +  +GLR S+        + +    ++ T K      V L +     LA         
Sbjct: 143 ELMYATGLRVSELVGLEQSEVNSRQGVVRITGKGDKERLVPLGEEAAHWLARYLREARGA 202

Query: 253 --------ETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGA 302
                   +T F+    + +    F    K  A  AG+    S H +R   AT   D GA
Sbjct: 203 LMSGHPPVDTVFVTRRGRGLTRQAFWYRIKHYAQVAGIEVPLSPHTLRHAFATHLLDHGA 262

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
               +    G  ++   + YT  A R RL   ++ 
Sbjct: 263 DLRVVQMLLGHSSLSTTQIYTHVA-RARLQSLHAE 296


>gi|89257003|ref|YP_514365.1| integrase/recombinase [Francisella tularensis subsp. holarctica
           LVS]
 gi|115315363|ref|YP_764086.1| site specific recombinase XerD [Francisella tularensis subsp.
           holarctica OSU18]
 gi|156503203|ref|YP_001429268.1| tyrosine recombinase XerD/ phage integrase family protein
           [Francisella tularensis subsp. holarctica FTNF002-00]
 gi|167009383|ref|ZP_02274314.1| tyrosine recombinase XerD [Francisella tularensis subsp. holarctica
           FSC200]
 gi|254368256|ref|ZP_04984276.1| integrase/recombinase [Francisella tularensis subsp. holarctica
           257]
 gi|254369853|ref|ZP_04985863.1| integrase/recombinase [Francisella tularensis subsp. holarctica
           FSC022]
 gi|290954477|ref|ZP_06559098.1| integrase/recombinase [Francisella tularensis subsp. holarctica
           URFT1]
 gi|295312082|ref|ZP_06802895.1| integrase/recombinase [Francisella tularensis subsp. holarctica
           URFT1]
 gi|89144834|emb|CAJ80173.1| Integrase/recombinase [Francisella tularensis subsp. holarctica
           LVS]
 gi|115130262|gb|ABI83449.1| site specific recombinase XerD [Francisella tularensis subsp.
           holarctica OSU18]
 gi|134254066|gb|EBA53160.1| integrase/recombinase [Francisella tularensis subsp. holarctica
           257]
 gi|156253806|gb|ABU62312.1| tyrosine recombinase XerD/ phage integrase family protein
           [Francisella tularensis subsp. holarctica FTNF002-00]
 gi|157122812|gb|EDO66941.1| integrase/recombinase [Francisella tularensis subsp. holarctica
           FSC022]
          Length = 292

 Score =  152 bits (384), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 45/265 (16%), Positives = 90/265 (33%), Gaps = 20/265 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKI---TTKHIRSGVESRKHTPSSAIQFLTSMR 141
             L+ N+  S+ +    +       D   +         S      ++  S  + ++++R
Sbjct: 16  HGLSQNTISSYRTDLKFLQNYFAKTDLISLDFEQLYAFISYRSKNGYSSHSNARMISTLR 75

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFE 197
             + W +       NP   +  PK   +  +  T+ D+++           G + +   E
Sbjct: 76  KFYAWLISTGQTNNNPTAKLTLPKLAKKLPKDMTETDVERLLQAPDMTEDVGIRDKAMLE 135

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDGFMKLLAMTPIGKET-- 254
            +  +GLR S+     +  +  NI  I+    G+    V + +  ++ L        T  
Sbjct: 136 LMYATGLRVSELVGLNIDDININIGVIQVMGKGSKERIVPIGEYALEYLQKYFAEARTSL 195

Query: 255 --------FFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATA 304
                    FI+   +++    F    K  A  AG+  + S H +R   AT   + GA  
Sbjct: 196 SKNFKEKAVFISKHAKRITRQSFWHRIKNYALIAGINTDISPHTLRHAFATHLLNHGADL 255

Query: 305 HELMATYGWKTVDQAETYTKGADRI 329
             +    G   V     YT  +   
Sbjct: 256 RSVQLLLGHSNVSTTTIYTHISQNR 280


>gi|254831444|ref|ZP_05236099.1| hypothetical protein Lmon1_08823 [Listeria monocytogenes 10403S]
 gi|284802400|ref|YP_003414265.1| hypothetical protein LM5578_2156 [Listeria monocytogenes 08-5578]
 gi|284995542|ref|YP_003417310.1| hypothetical protein LM5923_2107 [Listeria monocytogenes 08-5923]
 gi|284057962|gb|ADB68903.1| hypothetical protein LM5578_2156 [Listeria monocytogenes 08-5578]
 gi|284061009|gb|ADB71948.1| hypothetical protein LM5923_2107 [Listeria monocytogenes 08-5923]
          Length = 297

 Score =  152 bits (384), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 49/288 (17%), Positives = 104/288 (36%), Gaps = 33/288 (11%)

Query: 73  WLISEYRKSAHW----GSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVE 124
            LI ++    H+      L+ N+  ++E      +          D   +    I   + 
Sbjct: 3   DLIEDFL---HFLIVERGLSANTIKAYERDLHYFVSYMDVTKELTDPNTLERSDIVGFMA 59

Query: 125 ---SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
                  +P S  +++ S+R  F + +    ++ +P + +E PK+     +    +D+++
Sbjct: 60  FARQEGKSPRSVARYIASLRSFFHYLMHDGKMSHDPMIQIETPKQAKGLPKVLNLDDVEK 119

Query: 182 FK----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE 236
                 +    G + +   E L  +GLR ++     +  L  ++  I+T  K      + 
Sbjct: 120 LLSSSDTSTPLGLRDQAMMEILYATGLRVTELVSLKMDDLHLHMGFIQTIGKGDKERIIP 179

Query: 237 L-----------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284
           L            +     L       +  F+N+  Q +    F    K  A ++G+ K 
Sbjct: 180 LGKTATTVLEKYLEEARPKLRRPKYRNDFVFLNHHGQGLTRQGFWKILKGIAKESGIEKP 239

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            + H +R   AT   + GA    +    G   +   + YT    ++RL
Sbjct: 240 ITPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTH-VTKLRL 286


>gi|289550729|ref|YP_003471633.1| Site-specific recombinase XerD [Staphylococcus lugdunensis
           HKU09-01]
 gi|289180261|gb|ADC87506.1| Site-specific recombinase XerD [Staphylococcus lugdunensis
           HKU09-01]
          Length = 295

 Score =  152 bits (384), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 44/275 (16%), Positives = 99/275 (36%), Gaps = 24/275 (8%)

Query: 74  LISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE------SR 126
           +I EY K       L+ N+  ++    D+            I     ++  E       +
Sbjct: 4   IIEEYLKFIQIEKGLSPNTIGAYRRDLDKYKLYLETRHIEHIDFIDRQTIQECLGYLIDQ 63

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             +  S  +F++++R   ++A+R++Y A +P + +E PK + +       +++ +     
Sbjct: 64  GSSAKSLARFISTIRSFHQFALREKYAAKDPTVLLETPKYEKKLPDVLEIDEVVRLLEAP 123

Query: 187 SE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241
                 G + R   E +  +G+R S+     ++++   +  ++   K      + L D  
Sbjct: 124 DLSKKNGYRDRTILELMYATGMRVSELVHIEIENINVIMGFVRVFGKGDKERIIPLGDTV 183

Query: 242 MKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289
           +  L                    F+N   + ++        K    K+ + K+   H +
Sbjct: 184 IDYLKTYMKEIRPQLLKSTVTNVLFLNMHGKPLSRQGIWKMIKQYGIKSNITKTLTPHTL 243

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           R   AT   + GA    +    G   +   + YT 
Sbjct: 244 RHSFATHLLENGADLRAVQEMLGHSDISTTQLYTH 278


>gi|153830656|ref|ZP_01983323.1| tyrosine recombinase XerD [Vibrio cholerae 623-39]
 gi|148873865|gb|EDL72000.1| tyrosine recombinase XerD [Vibrio cholerae 623-39]
          Length = 302

 Score =  152 bits (384), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 47/279 (16%), Positives = 109/279 (39%), Gaps = 24/279 (8%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVES 125
           + L+ ++  +  +   LA N+ +S+ +   +++       YR         +  +S +  
Sbjct: 9   QGLVEQFLDTMWFERGLAENTVVSYRNDLSKLLEWMAQNQYRLDFISFAGLQEYQSWLSE 68

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           + + P+S  + L+++R LF++  R++  A +P   +  PK  T   +  ++  ++   S 
Sbjct: 69  QNYKPTSKARMLSAIRRLFQYLHREKVRADDPSALLVSPKLPTRLPKDLSEAQVEALLSA 128

Query: 186 W----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240
                    + +   E L  +GLR ++     ++++      ++   K G    V + + 
Sbjct: 129 PDPQSPLELRDKAMLELLYATGLRVTELVSLTMENMSLRQGVVRVMGKGGKERLVPMGEN 188

Query: 241 FMKLLAMTPIGKETFFI----------NNDKQKMNATQFSIWFKAKATKAGVN---KSAH 287
            ++ +        +  +          ++  Q+M    F    K  A  AG++    S H
Sbjct: 189 AIEWIETFLQQGRSLLLGEQTSDIVFPSSRGQQMTRQTFWHRIKHYAVIAGIDVEKLSPH 248

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            +R   AT   + GA    +    G   +   + YT  A
Sbjct: 249 VLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVA 287


>gi|309807082|ref|ZP_07701061.1| tyrosine recombinase XerD [Lactobacillus iners LactinV 03V1-b]
 gi|309809309|ref|ZP_07703178.1| tyrosine recombinase XerD [Lactobacillus iners SPIN 2503V10-D]
 gi|325911997|ref|ZP_08174399.1| tyrosine recombinase XerD [Lactobacillus iners UPII 143-D]
 gi|325912838|ref|ZP_08175216.1| tyrosine recombinase XerD [Lactobacillus iners UPII 60-B]
 gi|329921320|ref|ZP_08277758.1| tyrosine recombinase XerD [Lactobacillus iners SPIN 1401G]
 gi|308166512|gb|EFO68712.1| tyrosine recombinase XerD [Lactobacillus iners LactinV 03V1-b]
 gi|308170422|gb|EFO72446.1| tyrosine recombinase XerD [Lactobacillus iners SPIN 2503V10-D]
 gi|325476182|gb|EGC79346.1| tyrosine recombinase XerD [Lactobacillus iners UPII 143-D]
 gi|325477831|gb|EGC80965.1| tyrosine recombinase XerD [Lactobacillus iners UPII 60-B]
 gi|328934612|gb|EGG31116.1| tyrosine recombinase XerD [Lactobacillus iners SPIN 1401G]
          Length = 296

 Score =  152 bits (384), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 46/274 (16%), Positives = 100/274 (36%), Gaps = 25/274 (9%)

Query: 75  ISEYRKSAH-WGSLAVNSRISFESYFDQ---IIRKSG--DFDYRKITTKHIRSGVESRKH 128
           + +Y + A     L+ N+ +S+     +    ++  G   ++   +      +    +  
Sbjct: 5   LEDYLRFAQIERGLSNNTLLSYRQDLLEYFSFLKSLGITTWEVDALIIDSFLAQERDKGK 64

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF--- 185
             +S  + L+S+R  ++W  RQ  +  +P L ++ PK++       +  ++ +  +    
Sbjct: 65  AIASISRMLSSLRKFYQWLFRQNLIKQDPLLRIDSPKKEKRLPTALSTTEVTKLINMPDT 124

Query: 186 -WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMK 243
               G + R   E L  +G+R S+        +   +  IK   K      + + +  M 
Sbjct: 125 TTDLGIRDRAILETLYATGMRVSEVINLNEDSIHEELHLIKVFGKGSKQRLIPISNVAMS 184

Query: 244 LLAMTPIG------------KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289
            +    I             ++  F+N+   K+         K     AG+NK  + H +
Sbjct: 185 WIKKYQITVRNKTLLESGKFEKAIFLNSRGGKITRQAVWQMIKRYCQLAGINKNVTPHTL 244

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           R   AT   + GA    +    G   +   + YT
Sbjct: 245 RHTFATHLLENGADLRIVQEILGHSDISTTQIYT 278


>gi|110805962|ref|YP_689482.1| putative integrase for prophage CP-933U [Shigella flexneri 5 str.
           8401]
 gi|110615510|gb|ABF04177.1| putative integrase for prophage [Shigella flexneri 5 str. 8401]
          Length = 345

 Score =  152 bits (384), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 61/330 (18%), Positives = 108/330 (32%), Gaps = 29/330 (8%)

Query: 6   RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
           +LPP V   +        Y  K   R        ES  + A    L     K E   + R
Sbjct: 12  KLPPNVYPNK------YSYVWKPTSR--------ESVTLTAIKDGLAALWKKYEETVNNR 57

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
            +  T   L  ++  SA++  L+  ++  +  +  +++   G      I  +HIR  ++ 
Sbjct: 58  DRAMTFGRLWEKFLASAYYSDLSPRTQKDYLQHQKKLLAVFGKVPADSIKPEHIRRYMDK 117

Query: 126 RKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
           R   + + A    +SM  ++ W   + YV  NPC  V + K K       T ++ Q   S
Sbjct: 118 RGEQSKTQANHEKSSMSRVYSWGYERGYVKANPCAGVSKFKAKNRERYV-TDKEYQAVLS 176

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
                    +A E       R SD      + + N+   I+  KTG              
Sbjct: 177 VAPL--PVFIAMEIAYLCAARVSDVLSLKWEQIGNDGIFIQQGKTGKKQIKAWSPRLQAA 234

Query: 245 LAMTP--IGKETFFINNDKQKMNATQFSIWFKAKATKAG------VNKSAHGVRKFSATI 296
           +              N    +     F+  +     +AG       + + H + K     
Sbjct: 235 IEKAKQLPTSAYVISNQYGNRYMYKGFNEMWVEARNRAGKISGILTDFTFHDL-KAKGIS 293

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326
             +   ++ +     G KT  Q   Y +  
Sbjct: 294 DYE--GSSRDKQLFSGHKTEGQVLIYDRKV 321


>gi|15642416|ref|NP_232049.1| site-specific tyrosine recombinase XerD [Vibrio cholerae O1 biovar
           El Tor str. N16961]
 gi|121587637|ref|ZP_01677401.1| tyrosine recombinase XerD [Vibrio cholerae 2740-80]
 gi|121728363|ref|ZP_01681392.1| tyrosine recombinase XerD [Vibrio cholerae V52]
 gi|147673043|ref|YP_001217919.1| site-specific tyrosine recombinase XerD [Vibrio cholerae O395]
 gi|153802800|ref|ZP_01957386.1| tyrosine recombinase XerD [Vibrio cholerae MZO-3]
 gi|153818418|ref|ZP_01971085.1| tyrosine recombinase XerD [Vibrio cholerae NCTC 8457]
 gi|153822226|ref|ZP_01974893.1| tyrosine recombinase XerD [Vibrio cholerae B33]
 gi|153826869|ref|ZP_01979536.1| tyrosine recombinase XerD [Vibrio cholerae MZO-2]
 gi|227082540|ref|YP_002811091.1| integrase/recombinase XerD [Vibrio cholerae M66-2]
 gi|229507521|ref|ZP_04397026.1| tyrosine recombinase XerD [Vibrio cholerae BX 330286]
 gi|229512283|ref|ZP_04401762.1| tyrosine recombinase XerD [Vibrio cholerae B33]
 gi|229514045|ref|ZP_04403507.1| tyrosine recombinase XerD [Vibrio cholerae TMA 21]
 gi|229519419|ref|ZP_04408862.1| tyrosine recombinase XerD [Vibrio cholerae RC9]
 gi|229521248|ref|ZP_04410668.1| tyrosine recombinase XerD [Vibrio cholerae TM 11079-80]
 gi|229528596|ref|ZP_04417986.1| tyrosine recombinase XerD [Vibrio cholerae 12129(1)]
 gi|229607027|ref|YP_002877675.1| site-specific tyrosine recombinase XerD [Vibrio cholerae MJ-1236]
 gi|254226633|ref|ZP_04920213.1| tyrosine recombinase XerD [Vibrio cholerae V51]
 gi|254291785|ref|ZP_04962570.1| tyrosine recombinase XerD [Vibrio cholerae AM-19226]
 gi|254849542|ref|ZP_05238892.1| tyrosine recombinase XerD [Vibrio cholerae MO10]
 gi|255746910|ref|ZP_05420855.1| site-specific recombinase XerD [Vibrio cholera CIRS 101]
 gi|262161547|ref|ZP_06030657.1| site-specific recombinase XerD [Vibrio cholerae INDRE 91/1]
 gi|262168398|ref|ZP_06036095.1| site-specific recombinase XerD [Vibrio cholerae RC27]
 gi|262190652|ref|ZP_06048886.1| site-specific recombinase XerD [Vibrio cholerae CT 5369-93]
 gi|297581043|ref|ZP_06942968.1| tyrosine recombinase xerD [Vibrio cholerae RC385]
 gi|298500223|ref|ZP_07010028.1| tyrosine recombinase XerD [Vibrio cholerae MAK 757]
 gi|34223076|sp|Q9KPE9|XERD_VIBCH RecName: Full=Tyrosine recombinase xerD
 gi|9656993|gb|AAF95562.1| integrase/recombinase XerD [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121548147|gb|EAX58220.1| tyrosine recombinase XerD [Vibrio cholerae 2740-80]
 gi|121629354|gb|EAX61785.1| tyrosine recombinase XerD [Vibrio cholerae V52]
 gi|124121665|gb|EAY40408.1| tyrosine recombinase XerD [Vibrio cholerae MZO-3]
 gi|125620852|gb|EAZ49206.1| tyrosine recombinase XerD [Vibrio cholerae V51]
 gi|126511051|gb|EAZ73645.1| tyrosine recombinase XerD [Vibrio cholerae NCTC 8457]
 gi|126520236|gb|EAZ77459.1| tyrosine recombinase XerD [Vibrio cholerae B33]
 gi|146314926|gb|ABQ19465.1| tyrosine recombinase XerD [Vibrio cholerae O395]
 gi|149739285|gb|EDM53541.1| tyrosine recombinase XerD [Vibrio cholerae MZO-2]
 gi|150422297|gb|EDN14259.1| tyrosine recombinase XerD [Vibrio cholerae AM-19226]
 gi|227010428|gb|ACP06640.1| integrase/recombinase XerD [Vibrio cholerae M66-2]
 gi|227014311|gb|ACP10521.1| integrase/recombinase XerD [Vibrio cholerae O395]
 gi|229332370|gb|EEN97856.1| tyrosine recombinase XerD [Vibrio cholerae 12129(1)]
 gi|229341780|gb|EEO06782.1| tyrosine recombinase XerD [Vibrio cholerae TM 11079-80]
 gi|229344108|gb|EEO09083.1| tyrosine recombinase XerD [Vibrio cholerae RC9]
 gi|229349226|gb|EEO14183.1| tyrosine recombinase XerD [Vibrio cholerae TMA 21]
 gi|229352248|gb|EEO17189.1| tyrosine recombinase XerD [Vibrio cholerae B33]
 gi|229355026|gb|EEO19947.1| tyrosine recombinase XerD [Vibrio cholerae BX 330286]
 gi|229369682|gb|ACQ60105.1| tyrosine recombinase XerD [Vibrio cholerae MJ-1236]
 gi|254845247|gb|EET23661.1| tyrosine recombinase XerD [Vibrio cholerae MO10]
 gi|255735312|gb|EET90712.1| site-specific recombinase XerD [Vibrio cholera CIRS 101]
 gi|262023290|gb|EEY41994.1| site-specific recombinase XerD [Vibrio cholerae RC27]
 gi|262028858|gb|EEY47512.1| site-specific recombinase XerD [Vibrio cholerae INDRE 91/1]
 gi|262033466|gb|EEY51970.1| site-specific recombinase XerD [Vibrio cholerae CT 5369-93]
 gi|297534869|gb|EFH73705.1| tyrosine recombinase xerD [Vibrio cholerae RC385]
 gi|297540916|gb|EFH76970.1| tyrosine recombinase XerD [Vibrio cholerae MAK 757]
 gi|327484912|gb|AEA79319.1| Tyrosine recombinase XerD [Vibrio cholerae LMA3894-4]
          Length = 302

 Score =  152 bits (384), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 47/279 (16%), Positives = 108/279 (38%), Gaps = 24/279 (8%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVES 125
           + L+ ++  +  +   LA N+  S+ +   +++       YR         +  +S +  
Sbjct: 9   QGLVEQFLDTMWFERGLAENTVASYRNDLSKLLEWMAQNQYRLDFISFAGLQEYQSWLSE 68

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           + + P+S  + L+++R LF++  R++  A +P   +  PK  T   +  ++  ++   S 
Sbjct: 69  QNYKPTSKARMLSAIRRLFQYLHREKVRADDPSALLVSPKLPTRLPKDLSEAQVEALLSA 128

Query: 186 W----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240
                    + +   E L  +GLR ++     ++++      ++   K G    V + + 
Sbjct: 129 PDPQSPLELRDKAMLELLYATGLRVTELVSLTMENMSLRQGVVRVMGKGGKERLVPMGEN 188

Query: 241 FMKLLAMTPIGKETFFI----------NNDKQKMNATQFSIWFKAKATKAGVN---KSAH 287
            ++ +        +  +          ++  Q+M    F    K  A  AG++    S H
Sbjct: 189 AIEWIETFLQQGRSLLLGEQTSDIVFPSSRGQQMTRQTFWHRIKHYAVIAGIDVEKLSPH 248

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            +R   AT   + GA    +    G   +   + YT  A
Sbjct: 249 VLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVA 287


>gi|330828608|ref|YP_004391560.1| Tyrosine recombinase XerD [Aeromonas veronii B565]
 gi|328803744|gb|AEB48943.1| Tyrosine recombinase XerD [Aeromonas veronii B565]
          Length = 303

 Score =  152 bits (384), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 46/273 (16%), Positives = 97/273 (35%), Gaps = 22/273 (8%)

Query: 85  GSLAVNSRISFESYFDQII----RKSGDFDYRKI-TTKHIRSGVESRKHTPSSAIQFLTS 139
             L+ N+  S+ S  ++       +        +   +H  +     +   SS  +FL++
Sbjct: 25  RGLSDNTVSSYRSDLEKFSLWLDEQGSSLLLAGMDEIQHYLAWRVDHQFAASSTARFLSA 84

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195
           +R  +++  R++  + +P + +E PK   +     ++ +++   S          + +  
Sbjct: 85  LRRFYQYLNREKLRSDDPTVLLEGPKLPKKLPSDLSETEVEALLSAPLVDDPLELRDKAM 144

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFMKLLAMTPIGKET 254
            E L  +GLR S+      +H+      ++    G     V + +  M  L        T
Sbjct: 145 LELLYATGLRVSELVGLTAEHVSLRQGLVRVVGKGNKERLVPMGEEAMHWLERYYREART 204

Query: 255 FFI----------NNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302
             +          +   + M    F    K  A +AG+N   S H +R   AT   + GA
Sbjct: 205 LLLGGTSSDVVFPSKQARMMTRQTFWHRIKLYALRAGINGELSPHTLRHAFATHLLNHGA 264

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335
               +    G   +   + YT  A+     +  
Sbjct: 265 DLRVVQMLLGHADLSTTQIYTHVANERLKALHG 297


>gi|73662564|ref|YP_301345.1| site-specific recombinase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|82582339|sp|Q49XU5|XERD_STAS1 RecName: Full=Tyrosine recombinase xerD
 gi|72495079|dbj|BAE18400.1| site-specific recombinase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 295

 Score =  152 bits (384), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 50/277 (18%), Positives = 103/277 (37%), Gaps = 24/277 (8%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQI-----IRKSGDFDY-RKITTKHIRSGVE 124
             +I EY K       L+ N+  ++     +      ++K    D+  + + +     + 
Sbjct: 2   DTIIEEYLKFIQLEKGLSSNTIGAYRRDLKKYNTFLELQKISHIDFIDRASIQQCLGYLH 61

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
               +  S  +F++++R   ++A+R++Y A +P + +E PK   +        ++     
Sbjct: 62  DNGASAKSLARFISTIRSFHQFALREKYAAKDPTVLIETPKYDRKLPDVLEINEVLALLE 121

Query: 185 FWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPD 239
             +     G + R   E L  +G+R S+  +  ++ +   +  +K   K      V L D
Sbjct: 122 TPNLAKINGYRDRTMLELLYATGMRVSELIQIELEDVNLIMGFVKVFGKGNKERIVPLGD 181

Query: 240 GFMKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AH 287
             ++ L                  T F+N   + ++        K  A KA + KS   H
Sbjct: 182 TVIEYLKTYIETIRPQLLKKTVTNTLFLNMHGKPLSRQAIWKMIKQNAIKANITKSLTPH 241

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            +R   AT   + GA    +    G   +   + YT 
Sbjct: 242 TLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTH 278


>gi|208779461|ref|ZP_03246806.1| tyrosine recombinase XerD [Francisella novicida FTG]
 gi|208744422|gb|EDZ90721.1| tyrosine recombinase XerD [Francisella novicida FTG]
          Length = 292

 Score =  152 bits (384), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 44/265 (16%), Positives = 89/265 (33%), Gaps = 20/265 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKI---TTKHIRSGVESRKHTPSSAIQFLTSMR 141
             L+ N+  S+ +    +       D   +         S      ++  S  + ++++R
Sbjct: 16  HGLSQNTISSYRTDLKFLQNYFAKTDLISLDFEQLYAFISYRSKNGYSSRSNARMISTLR 75

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFE 197
             + W +       NP   +  PK   +  +  T+ D+++           G + +   E
Sbjct: 76  KFYAWLISTGQTNNNPTAKLTLPKLAKKLPKDMTETDVERLLQAPDMTEDVGIRDKAMLE 135

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDGFMKLLAMTPIGKET-- 254
            +  +GLR S+     +  +  NI  I+    G+    V + +  ++ L           
Sbjct: 136 LMYATGLRVSELVGLNIDDIDINIGVIQVMGKGSKERIVPIGEYALEYLQKYFAEARMSL 195

Query: 255 --------FFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATA 304
                    FI+   +++    F    K  A  AG+  + S H +R   AT   + GA  
Sbjct: 196 SKNFKEKAVFISKHAKRITRQSFWHRIKNYALIAGINTDISPHTLRHAFATHLLNHGADL 255

Query: 305 HELMATYGWKTVDQAETYTKGADRI 329
             +    G   V     YT  +   
Sbjct: 256 RSVQLLLGHSNVSTTTIYTHISQNR 280


>gi|169350488|ref|ZP_02867426.1| hypothetical protein CLOSPI_01256 [Clostridium spiroforme DSM 1552]
 gi|169292808|gb|EDS74941.1| hypothetical protein CLOSPI_01256 [Clostridium spiroforme DSM 1552]
          Length = 302

 Score =  152 bits (383), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 59/282 (20%), Positives = 106/282 (37%), Gaps = 23/282 (8%)

Query: 71  LKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVE- 124
           LK  I EY++       L+ N+  ++    +Q                I  +H+R  ++ 
Sbjct: 3   LKDEIEEYKQYLIVEKGLSKNTINAYIKDLNQFESYLDHNFQITKINDIAKEHVRLYIKE 62

Query: 125 -SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
            S+K + +S  + L S+R+ F +A ++  +  N     + PK   +     +KE+MQ+  
Sbjct: 63  LSKKISATSINRKLVSLRMFFTFATKETVIDTNIMSDFDLPKIDKKLPIVLSKEEMQELL 122

Query: 184 SFWSEG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELP 238
                     S+ R  FE +  +GLR S+     +  L  N+  +K   K      V L 
Sbjct: 123 DSIEINDHISSRNRCMFELMYATGLRVSELTNLTISSLNINMGYLKIIGKGDKERIVPLS 182

Query: 239 DGFMKLL---------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287
           +    +L                   F NN   K++  +  I  K    +  +NK  S H
Sbjct: 183 NMARNILNDYLKHYRNEFIKKDSPLLFFNNHGNKLSREECYIILKQIIERTTINKKISPH 242

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            +R   AT   + GA    +    G   +     YT  +++ 
Sbjct: 243 TIRHSFATHLLENGADLRSIQELLGHSNISTTTIYTHISNQK 284


>gi|262370170|ref|ZP_06063497.1| tyrosine recombinase XerD [Acinetobacter johnsonii SH046]
 gi|262315209|gb|EEY96249.1| tyrosine recombinase XerD [Acinetobacter johnsonii SH046]
          Length = 305

 Score =  152 bits (383), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 52/291 (17%), Positives = 105/291 (36%), Gaps = 19/291 (6%)

Query: 57  KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR--KSGDFDYRKI 114
           K+  + +P + PT L +L   ++      +++ ++R ++ S   Q          ++   
Sbjct: 4   KKPRVPAPVQIPTQLSFL-HGFKDYLIAQTVSPHTRNAYLSDLLQCSECSHVSMPEWSSD 62

Query: 115 TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
               +   +  +  +P S  + L+++R  FK+   Q+  + NP    + PK      +  
Sbjct: 63  DVADVLLTLTKQGKSPRSIARCLSALRSFFKFLREQKLRSDNPVALHKTPKIGRALPKDL 122

Query: 175 TKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKT 229
           +++D+             G + R  FE L   GLR S+     +  +      ++ T K 
Sbjct: 123 SEQDVDALIQAPDIETALGLRDRAMFEVLYACGLRVSELLNLRLDLINLKQGYLRITGKG 182

Query: 230 GTIITVELPDGFMKLL---------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280
                V L    ++ +          +     +  F+      M+   F    K  A +A
Sbjct: 183 NKERLVPLGQIAVEWVEKYLIESRPQLYKSATDYLFLTQHGGIMSRQNFWYAIKRYALQA 242

Query: 281 GV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           G+    S H +R   AT   + GA    +    G   +   + YT  A   
Sbjct: 243 GIQAELSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVR 293


>gi|117924957|ref|YP_865574.1| tyrosine recombinase XerD subunit [Magnetococcus sp. MC-1]
 gi|117608713|gb|ABK44168.1| tyrosine recombinase XerD subunit [Magnetococcus sp. MC-1]
          Length = 296

 Score =  152 bits (383), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 52/282 (18%), Positives = 99/282 (35%), Gaps = 29/282 (10%)

Query: 75  ISEYRKSAHWGS-------LAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSG 122
           +S+YR    +         LA N+ I++    D +       +      +          
Sbjct: 1   MSDYRLMERFLDELLIEHGLAANTLIAYRRDLDALRSFCASRNLTLPEIQRQDVLEYIGE 60

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           +  +  TPS+  + L++MR LF+  V +   + +P   V RPK + +     ++ + +  
Sbjct: 61  LAQKSLTPSTVARKLSAMRRLFRHLVDKGIRSEDPTGGVYRPKPQRKLPNTLSEAETEAL 120

Query: 183 K----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVEL 237
                +    G +     E +  +GLR S+     +  L      ++   K      V +
Sbjct: 121 LYAPDTSTELGMRDAAMLELMYATGLRVSELVTLTLDGLDEENGFVRVIGKGNKERIVPM 180

Query: 238 PDGFMKLLAMTPIGKET----------FFINNDKQKMNATQFSIWFKAKATKAGVNK--S 285
            +   +++                    F++N    M    F    K  A +A + K  S
Sbjct: 181 GEAATEMVIRYRHSARQVLLKGGRCNDLFLSNRGAAMTRHNFWHIVKRYAYEANIMKPLS 240

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
            HG+R   AT   + GA    +    G   +   E YT  A+
Sbjct: 241 PHGIRHAFATHLLNHGADLRAVQMMLGHADISTTEIYTHVAN 282


>gi|317485554|ref|ZP_07944431.1| tyrosine recombinase XerD [Bilophila wadsworthia 3_1_6]
 gi|316923234|gb|EFV44443.1| tyrosine recombinase XerD [Bilophila wadsworthia 3_1_6]
          Length = 336

 Score =  152 bits (383), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 56/303 (18%), Positives = 101/303 (33%), Gaps = 29/303 (9%)

Query: 52  TGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF-- 109
            G  P        R     L  LI+E         L+ N+  ++    D +     +   
Sbjct: 16  NGQRPDTPAGFPARLASRWLDGLIAE-------RGLSRNTVAAYRQDLDALQDFLDELET 68

Query: 110 DYRKITTKH---IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
               +  ++     + +  R     +  + ++S+R    W V +  +A NP   ++ PK 
Sbjct: 69  PLSGLDDENITLFIAWLRKRGDATRTLARRISSLRSFLAWCVERGELASNPAALIDTPKL 128

Query: 167 KTEGIRPWTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222
            +      T++++ +  +        G + R   E L  +G+R S+        L     
Sbjct: 129 PSLLPDVLTQDEIVRLLNAPDATSKLGLRDRAMLELLYAAGMRVSELIELQPIDLDLQRG 188

Query: 223 SIKT-QKTGTIITVELPDGFMKLLA---------MTPIGKETFFINNDKQKMNATQFSIW 272
            ++   K      V L D  +  +A          TP+     F+N     ++       
Sbjct: 189 VVRIFGKGSKERLVPLHDAAVMRMAEYLKIVRPLFTPVEDR-VFLNRSGNGLSRQGVWKL 247

Query: 273 FKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
            K  A +AG+ K  S H  R   AT   + GA    +    G   +   E YT       
Sbjct: 248 VKRYALEAGIRKPISPHTFRHSFATHLLEGGADLRSVQILLGHADMSATELYTHVQSERL 307

Query: 331 LGI 333
           L I
Sbjct: 308 LQI 310


>gi|312872390|ref|ZP_07732460.1| tyrosine recombinase XerD [Lactobacillus iners LEAF 2062A-h1]
 gi|312873969|ref|ZP_07734005.1| tyrosine recombinase XerD [Lactobacillus iners LEAF 2052A-d]
 gi|312875440|ref|ZP_07735443.1| tyrosine recombinase XerD [Lactobacillus iners LEAF 2053A-b]
 gi|311088951|gb|EFQ47392.1| tyrosine recombinase XerD [Lactobacillus iners LEAF 2053A-b]
 gi|311090518|gb|EFQ48926.1| tyrosine recombinase XerD [Lactobacillus iners LEAF 2052A-d]
 gi|311092213|gb|EFQ50587.1| tyrosine recombinase XerD [Lactobacillus iners LEAF 2062A-h1]
          Length = 296

 Score =  152 bits (383), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 46/274 (16%), Positives = 100/274 (36%), Gaps = 25/274 (9%)

Query: 75  ISEYRKSAH-WGSLAVNSRISFESYFDQ---IIRKSG--DFDYRKITTKHIRSGVESRKH 128
           + +Y + A     L+ N+ +S+     +    ++  G   ++   +      +    +  
Sbjct: 5   LEDYLRFAQIERGLSNNTLLSYRQDLLEYFSFLKSLGITTWEVDALIIDSFLAQERDKGK 64

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF--- 185
             +S  + L+S+R  ++W  RQ  +  +P L ++ PK++       +  ++ +  +    
Sbjct: 65  AIASISRMLSSLRKFYQWLFRQNLIKQDPLLRIDSPKKEKRLPIALSTTEVTKLINMPDT 124

Query: 186 -WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMK 243
               G + R   E L  +G+R S+        +   +  IK   K      + + +  M 
Sbjct: 125 TTDLGIRDRAILETLYATGMRVSEVINLNEDSIHEELHLIKVFGKGSKQRLIPISNVAMS 184

Query: 244 LLAMTPIG------------KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289
            +    I             ++  F+N+   K+         K     AG+NK  + H +
Sbjct: 185 WIKKYQITVRNKTLLESGKFEKAIFLNSRGGKITRQAVWQMIKRYCQLAGINKNVTPHTL 244

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           R   AT   + GA    +    G   +   + YT
Sbjct: 245 RHTFATHLLENGADLRIVQEILGHSDISTTQIYT 278


>gi|46908189|ref|YP_014578.1| integrase/recombinase XerD [Listeria monocytogenes str. 4b F2365]
 gi|47093384|ref|ZP_00231151.1| integrase/recombinase XerD [Listeria monocytogenes str. 4b H7858]
 gi|226224560|ref|YP_002758667.1| integrase/recombinase [Listeria monocytogenes Clip81459]
 gi|254825549|ref|ZP_05230550.1| integrase/recombinase XerD [Listeria monocytogenes FSL J1-194]
 gi|254852857|ref|ZP_05242205.1| integrase/recombinase XerD [Listeria monocytogenes FSL R2-503]
 gi|254931873|ref|ZP_05265232.1| integrase/recombinase XerD [Listeria monocytogenes HPB2262]
 gi|254992940|ref|ZP_05275130.1| integrase/recombinase [Listeria monocytogenes FSL J2-064]
 gi|255520096|ref|ZP_05387333.1| integrase/recombinase [Listeria monocytogenes FSL J1-175]
 gi|300763733|ref|ZP_07073730.1| tyrosine recombinase XerD [Listeria monocytogenes FSL N1-017]
 gi|71153414|sp|Q71Y59|XERD_LISMF RecName: Full=Tyrosine recombinase xerD
 gi|46881459|gb|AAT04755.1| integrase/recombinase XerD [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|47018255|gb|EAL09021.1| integrase/recombinase XerD [Listeria monocytogenes str. 4b H7858]
 gi|225877022|emb|CAS05731.1| Putative integrase/recombinase [Listeria monocytogenes serotype 4b
           str. CLIP 80459]
 gi|258606190|gb|EEW18798.1| integrase/recombinase XerD [Listeria monocytogenes FSL R2-503]
 gi|293583424|gb|EFF95456.1| integrase/recombinase XerD [Listeria monocytogenes HPB2262]
 gi|293594790|gb|EFG02551.1| integrase/recombinase XerD [Listeria monocytogenes FSL J1-194]
 gi|300515469|gb|EFK42519.1| tyrosine recombinase XerD [Listeria monocytogenes FSL N1-017]
 gi|328466303|gb|EGF37460.1| tyrosine recombinase xerD [Listeria monocytogenes 1816]
 gi|328472797|gb|EGF43646.1| tyrosine recombinase xerD [Listeria monocytogenes 220]
          Length = 297

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 49/288 (17%), Positives = 104/288 (36%), Gaps = 33/288 (11%)

Query: 73  WLISEYRKSAHW----GSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVE 124
            LI ++    H+      L+ N+  ++E      +       G  D   +    I   + 
Sbjct: 3   DLIEDFL---HFLIVERGLSANTIKAYERDLRYFVSYMDVAKGLTDPNTLERSDIVGFMA 59

Query: 125 ---SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
                  +  S  +++ S+R  F + +    ++ +P + +E PK+     +    +D+++
Sbjct: 60  FARQEGKSARSVARYIASLRSFFHYLMHDGKMSHDPMIQIETPKQAQGLPKVLNLDDVEK 119

Query: 182 FK----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE 236
                 +    G + +   E L  +GLR ++     +  L  ++  I+T  K      + 
Sbjct: 120 LLSSSDTSTPLGLRDQAMMEILYATGLRVTELVSLKMDDLHLHMGFIQTIGKGDKERIIP 179

Query: 237 L-----------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284
           L            +     L       +  F+N+  Q +    F    K  A ++G+ K 
Sbjct: 180 LGKTATTVLEKYLEEARPKLRRPKYRNDFVFLNHHGQGLTRQGFWKILKGIAKESGIEKP 239

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            + H +R   AT   + GA    +    G   +   + YT    ++RL
Sbjct: 240 ITPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTH-VTKLRL 286


>gi|16803994|ref|NP_465479.1| hypothetical protein lmo1955 [Listeria monocytogenes EGD-e]
 gi|47097098|ref|ZP_00234668.1| integrase/recombinase XerD [Listeria monocytogenes str. 1/2a F6854]
 gi|224498595|ref|ZP_03666944.1| hypothetical protein LmonF1_02414 [Listeria monocytogenes Finland
           1988]
 gi|224501245|ref|ZP_03669552.1| hypothetical protein LmonFR_01770 [Listeria monocytogenes FSL
           R2-561]
 gi|254827160|ref|ZP_05231847.1| integrase/recombinase XerD [Listeria monocytogenes FSL N3-165]
 gi|254899348|ref|ZP_05259272.1| hypothetical protein LmonJ_06029 [Listeria monocytogenes J0161]
 gi|254912513|ref|ZP_05262525.1| tyrosine recombinase XerD [Listeria monocytogenes J2818]
 gi|254936840|ref|ZP_05268537.1| integrase/recombinase XerD [Listeria monocytogenes F6900]
 gi|255028942|ref|ZP_05300893.1| hypothetical protein LmonL_06711 [Listeria monocytogenes LO28]
 gi|34222939|sp|Q8Y5V0|XERD_LISMO RecName: Full=Tyrosine recombinase xerD
 gi|16411408|emb|CAD00033.1| lmo1955 [Listeria monocytogenes EGD-e]
 gi|47014543|gb|EAL05506.1| integrase/recombinase XerD [Listeria monocytogenes str. 1/2a F6854]
 gi|258599542|gb|EEW12867.1| integrase/recombinase XerD [Listeria monocytogenes FSL N3-165]
 gi|258609436|gb|EEW22044.1| integrase/recombinase XerD [Listeria monocytogenes F6900]
 gi|293590498|gb|EFF98832.1| tyrosine recombinase XerD [Listeria monocytogenes J2818]
          Length = 297

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 49/288 (17%), Positives = 104/288 (36%), Gaps = 33/288 (11%)

Query: 73  WLISEYRKSAHW----GSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVE 124
            LI ++    H+      L+ N+  ++E      +          D   +    I   + 
Sbjct: 3   DLIEDFL---HFLIVERGLSANTIKAYERDLHYFVSYMDVTKELTDPNTLERSDIVGFMA 59

Query: 125 ---SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
                  +P S  +++ S+R  F + +    ++ +P + +E PK+     +    +D+++
Sbjct: 60  FARQEGKSPRSVARYIASLRSFFHYLMHDGKMSHDPMIQIETPKQAQGLPKVLNLDDVEK 119

Query: 182 FK----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE 236
                 +    G + +   E L  +GLR ++     +  L  ++  I+T  K      + 
Sbjct: 120 LLSSSDTSTPLGLRDQAMMEILYATGLRVTELVSLKMDDLHLHMGFIQTIGKGDKERIIP 179

Query: 237 L-----------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284
           L            +     L       +  F+N+  Q +    F    K  A ++G+ K 
Sbjct: 180 LGKTATTVLEKYLEEARPKLRRPKYRNDFVFLNHHGQGLTRQGFWKILKGIAKESGIEKP 239

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            + H +R   AT   + GA    +    G   +   + YT    ++RL
Sbjct: 240 ITPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTH-VTKLRL 286


>gi|153214077|ref|ZP_01949211.1| tyrosine recombinase XerD [Vibrio cholerae 1587]
 gi|124115503|gb|EAY34323.1| tyrosine recombinase XerD [Vibrio cholerae 1587]
          Length = 302

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 47/279 (16%), Positives = 108/279 (38%), Gaps = 24/279 (8%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVES 125
           + L+ ++  +  +   LA N+  S+ +   +++       YR         +  +S +  
Sbjct: 9   QGLVEQFLDTMWFERGLAENTVASYRNDLSKLLEWMAQNQYRLDFISFAGLQEYQSWLSE 68

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           + + P+S  + L+++R LF++  R++  A +P   +  PK  T   +  ++  ++   S 
Sbjct: 69  QNYKPTSKARMLSAIRRLFQYLHREKVRADDPSALLVSPKLPTRLPKDLSEAQVEALLSA 128

Query: 186 W----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240
                    + +   E L  +GLR ++     ++++      ++   K G    V + + 
Sbjct: 129 PDPQSPLELRDKAMLELLYATGLRVTELVSLTMENMSLRQGVVRVMGKGGKERLVPMGEN 188

Query: 241 FMKLLAMTPIGKETFFI----------NNDKQKMNATQFSIWFKAKATKAGVN---KSAH 287
            ++ +        +  +          ++  Q+M    F    K  A  AG++    S H
Sbjct: 189 AIEWIETFLQQGRSLLLGEQTSDIVFPSSRGQQMTRQTFWHRIKHYAAIAGIDVEKLSPH 248

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            +R   AT   + GA    +    G   +   + YT  A
Sbjct: 249 VLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVA 287


>gi|187940137|gb|ACD39269.1| phage integrase family protein [Pseudomonas aeruginosa]
          Length = 324

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 59/329 (17%), Positives = 117/329 (35%), Gaps = 36/329 (10%)

Query: 13  KERTRH--------GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64
           +++ RH        G   Y+ R G            +     Y +AL     +   +   
Sbjct: 4   RKKDRHLPMCMFQRGPSFYFVRDGKW----------TNLGRDYRAALL----EYAKLTGG 49

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
             K   +  LI            + N+   + +  +++     +F  R++  KH+     
Sbjct: 50  ASKDGMID-LIDRVMDHIA-PYRSANTITQYRAVAERLKDMFAEFQPREVLPKHVAQVKT 107

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
               TP+ A + LT +RV+F  A+    V  NPC+ ++    K  G R    +++     
Sbjct: 108 HMASTPNMANRTLTVLRVVFAQALEWGEVDSNPCIGIKPHSEKKRG-RYLNDKELLSILD 166

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
             SE    R  FE    +G R  D     +  + ++  + + QKTG+ + + +      +
Sbjct: 167 NCSE--YMRCIFELAYLTGQRIGDVLSIKLDDVSDDGIAFQQQKTGSKVLISMTPDLDAV 224

Query: 245 LAMT-----PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISA 298
           +        P   +    N   ++++       +K     AGV +   H +R  + T + 
Sbjct: 225 VQRAKALPRPADAKNLICNRKGKQVDYATTRDAWKRAREAAGVTDARIHDLRAKALTDAK 284

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGAD 327
             G  A +L    G       + Y +  +
Sbjct: 285 KQGKDARKL---GGHTDPRMTDRYIRQRE 310


>gi|332035836|gb|EGI72320.1| site-specific recombinase XerD [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 308

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 42/270 (15%), Positives = 93/270 (34%), Gaps = 19/270 (7%)

Query: 85  GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMR 141
             ++ N+  ++ S  D+     +         +  +   +        P S  + +++++
Sbjct: 33  QGVSENTLSAYRSDLDKFCLFLKGENLMTVTGLDIESYLAHRVDLGLKPRSTARSISALK 92

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFE 197
             +++ VR++ ++ +P L++ +PK      +  ++ +++   +      + G + +   E
Sbjct: 93  RFYQYFVREKIISDSPMLNIAQPKAGQSLPKTLSEAEVEALLNAPNTEEAMGLRDKAMLE 152

Query: 198 FLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET-- 254
            L  +GLR S+     ++ +           K      V L +  M  L     G     
Sbjct: 153 LLYATGLRVSELVGLRMEQINLRQAVVFVKGKGNKERLVPLGEEAMYWLEQFLKGGRAQM 212

Query: 255 -------FFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAH 305
                   F +     M    F    K  A  A V    S H +R   AT   + GA   
Sbjct: 213 IKHATDFVFPSKRGVGMTRQTFWHRIKHYAILASVESPLSPHTMRHAFATHLLNHGADLR 272

Query: 306 ELMATYGWKTVDQAETYTKGADRIRLGIKN 335
            +    G   +   + YT  A+     +  
Sbjct: 273 VVQMMLGHSDLSTTQIYTHVANERLKSVHA 302


>gi|53802409|ref|YP_112927.1| tyrosine recombinase XerD [Methylococcus capsulatus str. Bath]
 gi|53756170|gb|AAU90461.1| tyrosine recombinase XerD [Methylococcus capsulatus str. Bath]
          Length = 309

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 45/267 (16%), Positives = 89/267 (33%), Gaps = 23/267 (8%)

Query: 86  SLAVNSRISFESYFDQII------RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
            L+ ++  ++ S            R +          +       SRK    ++ + L+S
Sbjct: 31  GLSPHTLKAYGSDLRLFAAWLATNRCAELTALTGEDIEAYLGWRHSRKSKSRTSARVLSS 90

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195
           +R    + +R+  +  +PC  +  PK         T+ +++   +        G + R  
Sbjct: 91  IRHFCAYRLRRGEITGDPCALIAPPKLGRFLPDTLTESEVEALLAAPDVDTPLGFRDRAM 150

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAM------- 247
            E L  +GLR S+        +      ++ + K      V + +  +  L         
Sbjct: 151 LEMLYATGLRVSELVGLSFGQISLRQGVVRISGKGDKDRLVPVGEEALDWLERYLDKVRP 210

Query: 248 ---TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302
                   +  F+ +    M    F    K  A +AG++K  S H +R   AT   + GA
Sbjct: 211 VTLKGRQSDFLFVTDRGGAMTRQAFWHLIKRYAGQAGISKPLSPHTLRHAFATHLLNHGA 270

Query: 303 TAHELMATYGWKTVDQAETYTKGADRI 329
               +    G   +   + YT  A   
Sbjct: 271 DLRVVQMLLGHSDLSTTQIYTHVAQER 297


>gi|292491052|ref|YP_003526491.1| tyrosine recombinase XerD [Nitrosococcus halophilus Nc4]
 gi|291579647|gb|ADE14104.1| tyrosine recombinase XerD [Nitrosococcus halophilus Nc4]
          Length = 306

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 57/285 (20%), Positives = 99/285 (34%), Gaps = 25/285 (8%)

Query: 77  EYRKSAHWGS--LAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESRKHT 129
           EY   A W    LA N+  ++    +   R         +  +        +    R H 
Sbjct: 18  EYFLDALWLEEGLAENTLAAYRRDLEGFSRWLYPQGRTLVEAQREDLLAYLAHRLERSHK 77

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---- 185
             SA + ++S+R  +++ VR++    +P   VE P+         ++E+++   +     
Sbjct: 78  ARSAARSVSSLRRFYRYLVREKVRDSDPSDRVEAPRLGRPLPESLSEEEVEALLAAPEVN 137

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFMKL 244
            + G + R   E L  +GLR S+     +  L      ++    G     V L +  +  
Sbjct: 138 CNLGLRDRAMLETLYATGLRVSELVHLTLPQLNLRQGVVRLSGKGNKERLVPLGEVALSW 197

Query: 245 LAMTPIGKET----------FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292
           L                    F+      M    F    K  A +AGV K  S H +R  
Sbjct: 198 LECYSREARPGLIKAQMSEILFLTRRGGAMTRQAFWYLIKRYARQAGVRKALSPHTLRHA 257

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
            AT   + GA    +    G   +   + YT  A R RL   + +
Sbjct: 258 FATHLLNHGADLRVVQMLLGHADLSTTQIYTHVA-RARLQQLHQQ 301


>gi|270295321|ref|ZP_06201522.1| tyrosine recombinase XerD [Bacteroides sp. D20]
 gi|270274568|gb|EFA20429.1| tyrosine recombinase XerD [Bacteroides sp. D20]
          Length = 317

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 62/298 (20%), Positives = 116/298 (38%), Gaps = 27/298 (9%)

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQII-----RKSGDFDY 111
           +    S  K+  TL  +I +Y +      +L+ N+  ++++   +++           D 
Sbjct: 2   KSEEKSTNKEKQTL--IIRKYHQYLKLEKALSPNTVDAYQTDLQKLLHFLEGEGIAILDT 59

Query: 112 RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
                +H  SG+      P S  + L+ ++  F + V  +Y+  +P   +E PK   +  
Sbjct: 60  TLDDLQHFASGLHDIGIHPRSQARILSGIKSFFHFLVIADYLEGDPSELLEGPKIGFKLP 119

Query: 172 RPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227
              T E++ +  S    G+    + R   E L   GLR S+ C   +  L  +   IK +
Sbjct: 120 EVLTVEEIDRIISAIDLGTNEGQRNRAILETLYSCGLRVSELCNLKISDLYFDEGFIKVE 179

Query: 228 KTGTIIT-VELPDGFMKLLAMTPIGK-----------ETFFINNDKQKMNATQFSIWFKA 275
             G+    V +    +K +    + +           +  F+    + ++        K 
Sbjct: 180 GKGSKQRLVPISSRAIKEIRNWFVDRNGGWKIKKDFEDYVFLARWGKNISRIMVFHLIKE 239

Query: 276 KATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            A KAG+ K  S H  R   AT   + GA    + +  G +++   E YT   DR RL
Sbjct: 240 LAEKAGITKNISPHTFRHSFATHLLEGGANLRAIQSMLGHESIATTEIYTH-IDRHRL 296


>gi|220935295|ref|YP_002514194.1| tyrosine recombinase XerD [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996605|gb|ACL73207.1| tyrosine recombinase XerD [Thioalkalivibrio sp. HL-EbGR7]
          Length = 308

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 56/301 (18%), Positives = 102/301 (33%), Gaps = 29/301 (9%)

Query: 62  NSPRKKPTTLKWLISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTK 117
                 P+TL   I  +   A W    L+ ++  ++ +    + R  G       +    
Sbjct: 7   GPDTAPPSTLA--IDAFL-DAIWAEHGLSDHTLAAYRADLMALARWLGPRGKRVEQADRG 63

Query: 118 HIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
            + + +  R      P S  + L+S+R  ++  VR      +P   ++ PK         
Sbjct: 64  DLLAYLSHRVAGGARPRSTARLLSSLRRFYRHQVRDGRRQDDPTAQIDSPKLGRPLPDTL 123

Query: 175 TKEDMQQFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKT 229
           ++ D++   +        G + R   E L  +GLR S+     V  +      ++T  K 
Sbjct: 124 SETDVEALLASPDTDTDLGLRDRAMLELLYATGLRVSELVGLRVDQVNLRHGVVRTLGKG 183

Query: 230 GTIITVELPDGF-----------MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKAT 278
                V L +                L       +  F+      M    F    +  A 
Sbjct: 184 SKERLVPLGEEASVWVERYLGAARPALLAGQGACDDLFVTRRGGAMTRQAFWHLLRRYAA 243

Query: 279 KAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
           +AG++K  S H +R   AT   + GA    +    G   +   + YT  A R RL   + 
Sbjct: 244 QAGIHKHLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARLKELHG 302

Query: 337 R 337
           +
Sbjct: 303 K 303


>gi|282859943|ref|ZP_06269031.1| tyrosine recombinase XerD [Prevotella bivia JCVIHMP010]
 gi|282587346|gb|EFB92563.1| tyrosine recombinase XerD [Prevotella bivia JCVIHMP010]
          Length = 310

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 48/259 (18%), Positives = 94/259 (36%), Gaps = 22/259 (8%)

Query: 88  AVNSRISFESYFDQII-----RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRV 142
           + N+  ++    +++       K    D +    +H  + +        S  + L+ +R 
Sbjct: 26  SENTVDAYMHDIEKLSSYLKAEKVDVLDVKLDDLEHFAASISEIGIGARSLARILSGVRH 85

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLAFEF 198
            +++ V   Y+  +P   +E PK+        +  ++            EG + +   E 
Sbjct: 86  FYRFLVLDGYLEADPTELLESPKQPQHLPEVLSTAEVDIILQSIDLSKWEGQRNKAIIEM 145

Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDGFMKLLAMTPIGK----- 252
           L   GLR S+     + +L  +   I+    G+    V +    ++ L    + +     
Sbjct: 146 LFSCGLRVSELTNLKLSNLYLDDLYIRVMGKGSKERLVPISPRAVEELNYWFLDRNQMVI 205

Query: 253 -----ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAH 305
                +  F+N     +  T   I  K  A  AG+ K  S H +R   AT   + GA   
Sbjct: 206 KEGEEDYVFLNRRGAHLTRTMILIMLKRYAKGAGIKKTISPHTLRHSFATALLEGGADLR 265

Query: 306 ELMATYGWKTVDQAETYTK 324
            + A  G ++V   E YT 
Sbjct: 266 SIQAMLGHESVVTTEIYTH 284


>gi|315658225|ref|ZP_07911097.1| tyrosine recombinase XerD [Staphylococcus lugdunensis M23590]
 gi|315496554|gb|EFU84877.1| tyrosine recombinase XerD [Staphylococcus lugdunensis M23590]
          Length = 295

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 44/275 (16%), Positives = 99/275 (36%), Gaps = 24/275 (8%)

Query: 74  LISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE------SR 126
           +I EY K       L+ N+  ++    D+            I     ++  E       +
Sbjct: 4   IIEEYLKFIQIEKGLSPNTIGAYRRDLDKYKLYLETRHIEHIDFIDRQTIQECLGYLIDQ 63

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             +  S  +F++++R   ++A+R++Y A +P + +E PK + +       +++ +     
Sbjct: 64  GSSAKSLARFISTIRSFHQFALREKYAAKDPTVLLETPKYEKKLPDVLEIDEVVRLLEAP 123

Query: 187 SE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241
                 G + R   E +  +G+R S+     ++++   +  ++   K      + L D  
Sbjct: 124 DLSKKNGYRDRTILELMYATGIRVSELVHIEIENINVIMGFVRVFGKGDKERIIPLGDTV 183

Query: 242 MKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289
           +  L                    F+N   + ++        K    K+ + K+   H +
Sbjct: 184 IDYLKTYMKEIRPQLLKSTVTNVLFLNMHGKPLSRQGIWKMIKQYGIKSNITKTLTPHTL 243

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           R   AT   + GA    +    G   +   + YT 
Sbjct: 244 RHSFATHLLENGADLRAVQEMLGHSDISTTQLYTH 278


>gi|302187933|ref|ZP_07264606.1| site-specific recombinase, phage integrase family protein
           [Pseudomonas syringae pv. syringae 642]
          Length = 328

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 65/325 (20%), Positives = 122/325 (37%), Gaps = 33/325 (10%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
           LPP +     +HG   Y  RKG   R  L    +   + AY   + G +           
Sbjct: 10  LPPCMY---LKHG-AYYLVRKGKWER--LGNDFQEALL-AYAKIVGGKSN---------- 52

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
               +  LI E   +     L+VN+   +E+   ++     +F+ R++  +H+ +     
Sbjct: 53  --GGMSLLIDEALDAMR-RRLSVNTIKQYEAASVRLKTYLEEFEPRQVLPRHVAALKLHM 109

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             TP+ A + ++ +R++F +A+ ++ V  NPC  + R   K    R  +  +     +  
Sbjct: 110 SDTPNMANRVISFLRMVFAYALERQIVDSNPCTGIRRHAEKKR-DRYISDAEFAAICAAS 168

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
           SE     + +E    +G R SD     +  + +   + + QKTG  + V +      LL 
Sbjct: 169 SEYMS--VIWEMCFLTGQRISDVLNIKLSDISDIGIAFEQQKTGAKLIVGMSQDLKALLD 226

Query: 247 ------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG-VNKSAHGVRKFSATISAD 299
                     G   F   +  + ++     + F+A    AG +  + H +R  S T +  
Sbjct: 227 RVHALPRKIRGATLFCARSGGKPVSYDTCKMSFRAACKAAGVIGATIHDLRAKSLTDTDR 286

Query: 300 AGATAHELMATYGWKTVDQAETYTK 324
            G  A       G         Y +
Sbjct: 287 QGNNA---QMLGGHSDPRMTARYLR 308


>gi|254513968|ref|ZP_05126029.1| tyrosine recombinase XerD [gamma proteobacterium NOR5-3]
 gi|219676211|gb|EED32576.1| tyrosine recombinase XerD [gamma proteobacterium NOR5-3]
          Length = 302

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 53/275 (19%), Positives = 100/275 (36%), Gaps = 23/275 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFD-----YRKITTKHIRSGVESRKHTPSSAIQFLTS 139
             L+ N+  ++        R +   +       +   +   + + + K +P SA + L+ 
Sbjct: 24  KGLSENTLAAYRRDLQSFARWASTRNRSTTKVARTDIEAYLAYLLAHKRSPRSAARALSC 83

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLA 195
           +R  ++  +R   +  +P L ++ P+      +  ++ D+       +     G + R  
Sbjct: 84  LRGYYRHLLRSGQLKEDPTLGLDSPRLGRPLPKTLSEADVDALLQAPNLEELIGFRDRCM 143

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAM------- 247
            E L   GLR S+     V  L  N   ++ + K G    V + +  +  L         
Sbjct: 144 LELLYACGLRVSELTGLTVSQLSLNQGVVRISGKGGKERLVPVGEEALHWLQRYLREIRP 203

Query: 248 ---TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302
                   E  F +   Q M    F    K  A  AG++K  S H +R   AT   + GA
Sbjct: 204 QLLGETSSEVLFPSRRAQMMTRQTFWHRIKQHAITAGIHKPISPHVLRHAFATHLVNHGA 263

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
               +    G   +   + YT  A R RL   +++
Sbjct: 264 DLRVVQLLLGHSDLSTTQIYTHVA-RQRLQSLHAK 297


>gi|116873397|ref|YP_850178.1| integrase/recombinase [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116742275|emb|CAK21399.1| integrase/recombinase [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 297

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 49/288 (17%), Positives = 104/288 (36%), Gaps = 33/288 (11%)

Query: 73  WLISEYRKSAHW----GSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVE 124
            LI ++    H+      L+ N+  +++      +          D   +    I   + 
Sbjct: 3   DLIEDFL---HFLIVEKGLSANTIKAYQRDLRYFVSYMETSKNLTDPNILERSDIVGFMA 59

Query: 125 ---SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
                  +  S  +++ S+R  F + +    ++ +P + +E PK+     +    +D+++
Sbjct: 60  FARQEGKSARSVARYIASLRSFFHYLMHDGKMSHDPMIQIETPKQAQSLPKVLNLDDVEK 119

Query: 182 FKS----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE 236
             S        G + +   E L  +GLR ++  R  +  L  ++  I+T  K      + 
Sbjct: 120 LLSSSDISTPLGLRDQAMMEILYATGLRVTELVRLKMDDLHLHMGFIQTIGKGDKERIIP 179

Query: 237 L-----------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284
           L            +     L       +  F+N+  Q +    F    K  A ++G+ K 
Sbjct: 180 LGKTATTVLEQYLEEARPKLRRPKYRNDFVFLNHHGQGLTRQGFWKILKGIAKESGIEKP 239

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            + H +R   AT   + GA    +    G   +   + YT    ++RL
Sbjct: 240 ITPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTH-VTKLRL 286


>gi|310642630|ref|YP_003947388.1| phage integrase:phage integrase, n-terminal sam-like protein
           [Paenibacillus polymyxa SC2]
 gi|309247580|gb|ADO57147.1| Phage integrase:Phage integrase, N-terminal SAM-like protein
           [Paenibacillus polymyxa SC2]
          Length = 314

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 45/283 (15%), Positives = 102/283 (36%), Gaps = 32/283 (11%)

Query: 76  SEYRKSAHWGSLAVNSRISFESY---FDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132
            +Y +      L+ ++  +++     F +     G      +   H+   +   K    +
Sbjct: 9   VQYME--EEKGLSRSTLEAYQRDVQQFAEFAESCGLEQPDNVQRSHLVLYLGHLKEQGKA 66

Query: 133 A---IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---- 185
           A    + + S+R  F + +R+     +P + VE PK   +     T++++++  +     
Sbjct: 67  AATISRSVASIRSFFHFLIREGIAIHDPSVLVELPKATKKKPSVLTQDEIERLLAAPDVS 126

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK-TGTIITVELPDGFMKL 244
             +G + +   E L  +G+R S+     V  ++ ++  +      G    V +     + 
Sbjct: 127 APQGGRDKAMLELLYATGIRVSELIALNVCDVRIDLRFVHCGGEAGKERVVPISREASQW 186

Query: 245 LAM-----------------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--S 285
                                   +E  F+N   Q+++   F    K  A +AG++K  +
Sbjct: 187 AQAYLDEQRPALLRPGQGEEAQTKQEALFLNVSGQRLSRQGFWKIIKKYAQEAGISKDIT 246

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
            H +R   A    + GA    +    G   +   + Y + A R
Sbjct: 247 PHTLRHSFAVHMLEGGADLRSVQEMLGHADLATTQVYAQTARR 289


>gi|223043159|ref|ZP_03613206.1| tyrosine recombinase XerD [Staphylococcus capitis SK14]
 gi|314933674|ref|ZP_07841039.1| tyrosine recombinase XerD [Staphylococcus caprae C87]
 gi|222443370|gb|EEE49468.1| tyrosine recombinase XerD [Staphylococcus capitis SK14]
 gi|313653824|gb|EFS17581.1| tyrosine recombinase XerD [Staphylococcus caprae C87]
          Length = 295

 Score =  151 bits (381), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 47/275 (17%), Positives = 96/275 (34%), Gaps = 24/275 (8%)

Query: 74  LISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE------SR 126
           +I EY         L+ N+  ++     +      +     I     +   E        
Sbjct: 4   IIEEYLNFIQIEKGLSSNTIGAYRRDLKKYEEYLEERKISHIDFVDRQVIQECLGHLIDL 63

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             +  S  +F++++R   ++A+R+ Y A +P + +E PK + +       +++       
Sbjct: 64  GQSSKSLARFISTIRSFHQFALRERYAAKDPTVLIETPKYEKKLPDVLEVQEVLDLLETP 123

Query: 187 SE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241
                 G + R   E L  +G+R S+  +  V+ +   +  ++   K      V L D  
Sbjct: 124 DLSKNNGYRDRTMLELLYATGMRVSEIIQLEVEDVNLMMGFVRVFGKGNKERIVPLGDAV 183

Query: 242 MKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289
           ++ L                    F+N   + ++        K    KA +NK+   H +
Sbjct: 184 IEYLTTYIETVRPQLLKQTVTHVLFLNMHGKPLSRQGIWKMIKQNGIKANINKTLTPHTL 243

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           R   AT   + GA    +    G   +   + YT 
Sbjct: 244 RHSFATHLLENGADLRAVQEMLGHSDISTTQLYTH 278


>gi|242373798|ref|ZP_04819372.1| tyrosine recombinase XerD [Staphylococcus epidermidis M23864:W1]
 gi|242348535|gb|EES40137.1| tyrosine recombinase XerD [Staphylococcus epidermidis M23864:W1]
          Length = 295

 Score =  151 bits (381), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 47/275 (17%), Positives = 98/275 (35%), Gaps = 24/275 (8%)

Query: 74  LISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE------SR 126
           +I EY         L+ N+  ++    ++      +     I     +   E        
Sbjct: 4   IIEEYLNFIQIEKGLSSNTIGAYRRDLNKYKTYLEERKITHIDFVDRQVIQECLGHLIDL 63

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             +  S  +F++++R   ++A+R++Y A +P + +E PK + +       +++       
Sbjct: 64  GQSSKSLARFISTIRSFHQFALREKYAAKDPTVLIETPKYEKKLPDVLEVQEVLDLLETP 123

Query: 187 SE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241
                 G + R   E L  +G+R S+  +  V+ +   +  ++   K      V L D  
Sbjct: 124 DLTKNNGYRDRTMLELLYATGMRVSEIIQLEVEDVNLMMGFVRVFGKGNKERIVPLGDAV 183

Query: 242 MKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289
           ++ L                    F+N   + ++        K    KA +NK+   H +
Sbjct: 184 IEYLTTYIETVRPQLLKQTVTHVLFLNMHGKPLSRQGIWKMIKQNGIKANINKTLTPHTL 243

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           R   AT   + GA    +    G   +   + YT 
Sbjct: 244 RHSFATHLLENGADLRAVQEMLGHSDISTTQLYTH 278


>gi|323187727|gb|EFZ73028.1| phage integrase family protein [Escherichia coli RN587/1]
          Length = 341

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 62/330 (18%), Positives = 107/330 (32%), Gaps = 29/330 (8%)

Query: 6   RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
           RLPP V   +        Y  K   R        ES  + A    L     K E   + R
Sbjct: 12  RLPPNVYPNK------YSYVWKPTSR--------ESVTLTAIKDGLAALWKKYEETVNNR 57

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
            +  T   L  ++  SA +  L+  ++  +  +  +++   G      I  +HIR  ++ 
Sbjct: 58  DRAMTFGRLWEKFLASACYSELSPRTQKDYLQHQKKLLAVFGKVPADSIKPEHIRRYMDK 117

Query: 126 RKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
           R   + + A    +SM  ++ W   + YV  NPC  V + K K       T ++ Q   S
Sbjct: 118 RGEQSKTQANHEKSSMSRVYSWGYERGYVKANPCAGVSKFKAKNRERYV-TDKEYQAVLS 176

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
                    +A E       R SD      + + N+   I+  KTG              
Sbjct: 177 VAPL--PVFIAMEIAYLCAARISDVLSLKWEQIGNDGIFIQQGKTGKKQIKAWSPRLQAA 234

Query: 245 LAMTP--IGKETFFINNDKQKMNATQFSIWFKAKATKAG------VNKSAHGVRKFSATI 296
           +              N    +     F+  +     +AG       + + H + K     
Sbjct: 235 IEKAKQLPTSAYVISNQYGNRYMYKGFNEMWVEARNRAGKISGILTDFTFHDL-KAKGIS 293

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326
             +   ++ +     G KT  Q   Y +  
Sbjct: 294 DYE--GSSRDKQLFSGHKTEGQVLIYDRKV 321


>gi|319400839|gb|EFV89058.1| tyrosine recombinase XerD [Staphylococcus epidermidis FRI909]
          Length = 295

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 47/276 (17%), Positives = 97/276 (35%), Gaps = 24/276 (8%)

Query: 73  WLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE------S 125
            +I EY         L+ N+  ++     +      D     I     +   E       
Sbjct: 3   NIIDEYLNFIQIEKGLSNNTIGAYRRDLKKYKDYLEDNKISHIDFIDRQIIQECLGHLID 62

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
              +  S  +F++++R   ++A+R++Y A +P + +E PK + +        ++      
Sbjct: 63  MGQSSKSLARFISTIRSFHQFALREKYAAKDPTVLIETPKYEKKLPDVLEINEVIALLET 122

Query: 186 WSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240
                  G + R   E L  +G+R ++  +  V+ +   +  ++   K      V L D 
Sbjct: 123 PDLAKNNGYRDRTMLELLYATGMRVTEIIQLDVEDVNLMMGFVRVFGKGNKERIVPLGDT 182

Query: 241 FMKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHG 288
            ++ L                 +  F+N   + ++        K    KA +NK+   H 
Sbjct: 183 VIEYLTTYIETVRPQLLKQTTTQALFLNMHGKSLSRQGIWKIIKQYGLKANINKTLTPHT 242

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +R   AT   + GA    +    G   +   + YT 
Sbjct: 243 LRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTH 278


>gi|90961911|ref|YP_535827.1| integrase/recombinase XerD/RipX family [Lactobacillus salivarius
           UCC118]
 gi|90821105|gb|ABD99744.1| Integrase/recombinase, XerD/RipX family [Lactobacillus salivarius
           UCC118]
          Length = 297

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 50/269 (18%), Positives = 113/269 (42%), Gaps = 25/269 (9%)

Query: 85  GSLAVNSRISFE---SYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI----QFL 137
             L+ N+  S+      F + +R++    ++++  + I + ++S K+  + A     + +
Sbjct: 18  RGLSENTINSYGIDFKLFLEYLRENEIPSFKQVNKEVIVNYMQSEKNN-NKANSSILRSV 76

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPR 193
           +S+R  F++  +++ +  +P L ++ PK+K    +  TKE++++     +     G + R
Sbjct: 77  SSLRKFFQYLAQEKIIEKDPMLLIDTPKKKQHLPQVLTKEEVEKLLRSPNTGQVLGLRDR 136

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM----- 247
              E +  +GLR S+     ++ L   + +++T  K      V + D  +K +       
Sbjct: 137 AMLELMYATGLRISEIINLKLEDLHLTMGTLQTLGKGHKERIVPVGDEAIKWVNRYLEEA 196

Query: 248 -----TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
                        F+N     +         KA+  KAG+ K  + H +R   AT   + 
Sbjct: 197 RPKLLKQKRSNYLFLNFHGNNLTRQGVWKNLKAEVRKAGIQKNITPHTLRHSFATHILEN 256

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRI 329
           GA    +    G   +   + YT  +++ 
Sbjct: 257 GADLRIVQELLGHADISTTQIYTHLSNKQ 285


>gi|327440847|dbj|BAK17212.1| site-specific recombinase XerD [Solibacillus silvestris StLB046]
          Length = 300

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 49/292 (16%), Positives = 110/292 (37%), Gaps = 33/292 (11%)

Query: 71  LKWLISEYRKSAHW----GSLAVNSRISFESYFDQIIRKSG----DFDYRKITTKHIRSG 122
           LK  I +Y    H+      L+ N+  S++       R         ++  +  +HI   
Sbjct: 4   LKDSIEDYL---HFIKVERQLSDNTLQSYKRDLVAYARHIHYEQQIMEFDNVMREHILLY 60

Query: 123 VESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
           ++S +    +  +  + ++S+R   ++ +R++    +P + +E PK++    +  + E++
Sbjct: 61  LDSLRSVGKSSKTISRQISSIRSFHQFLLREKVTNQDPTVHLEMPKKELSLPKVLSIEEI 120

Query: 180 QQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIIT 234
               +       +G++     E +  SG+R S+     ++ +   +  ++   K G    
Sbjct: 121 DALLTAPSVEKPQGTRDIAILEMMYGSGMRISELIDLNLEDVHLTMGFVRVFGKGGKERI 180

Query: 235 VEL-----------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
           + L            +     L    +  + FFI    ++          K  A  AG++
Sbjct: 181 IPLGRSAIQACINYLEQARPQLLGDALKNDAFFITQRGKRFTRQGCWKIIKEHAATAGIS 240

Query: 284 K--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           K  + H +R   AT   + GA    +    G   +   + YT    + RL  
Sbjct: 241 KEITPHVLRHSFATHLIENGADLRAVQELLGHADISTTQIYTH-VSKTRLSE 291


>gi|89099048|ref|ZP_01171927.1| tyrosine recombinase [Bacillus sp. NRRL B-14911]
 gi|89086178|gb|EAR65300.1| tyrosine recombinase [Bacillus sp. NRRL B-14911]
          Length = 297

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 45/265 (16%), Positives = 100/265 (37%), Gaps = 25/265 (9%)

Query: 85  GSLAVNSRISFES----YFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI---QFL 137
             LA N+ +S+E     Y   I++  G     ++   HI   ++  K    SA    + +
Sbjct: 16  KGLANNTIVSYERDLKNYLKFIVKSEGLASLNEVQRVHIVQFLKKLKEQGKSAKTLARHI 75

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ----PR 193
            S+R   ++ +R++    +P + +E P+++    +  +  +++      S+ S      +
Sbjct: 76  ASIRAFHQFLLREKVCENDPSVHIESPQQERSLPKVLSMAEVETLLESPSDSSHYSLRDK 135

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM----- 247
              E L  +G+R S+     +  +   +  ++   K      + +     + +       
Sbjct: 136 AMLELLYATGIRVSELIGLQIGDVHLTMGFVRCIGKGNKERIIPIGKTASEAIERYLLHG 195

Query: 248 ------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
                      +T F+N+  +++    F    K  A  AG+ K  + H +R   AT   +
Sbjct: 196 RPNFVSKSRRDDTLFLNHHGRQLTRQGFWKILKKLAGDAGIEKELTPHTLRHSFATHLLE 255

Query: 300 AGATAHELMATYGWKTVDQAETYTK 324
            GA    +    G   +   + YT 
Sbjct: 256 NGADLRAVQEMLGHADISTTQIYTH 280


>gi|301020468|ref|ZP_07184556.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 196-1]
 gi|299881824|gb|EFI90035.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 196-1]
          Length = 341

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 61/330 (18%), Positives = 107/330 (32%), Gaps = 29/330 (8%)

Query: 6   RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
           +LPP V   +        Y  K   R        ES  + A    L     K E   + R
Sbjct: 12  KLPPNVYPNK------YSYVWKPTSR--------ESVTLTAIKDGLAALWKKYEETVNNR 57

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
            +  T   L  ++  SA +  L+  ++  +  +  +++   G      I  +HIR  ++ 
Sbjct: 58  DRAMTFGRLWEKFLASACYSDLSPRTQKDYLQHQKKLLAVFGKVPADSIKPEHIRRYMDK 117

Query: 126 RKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
           R   + + A    +SM  ++ W   + YV  NPC  V + K K       T ++ Q   S
Sbjct: 118 RGEQSKTQANHEKSSMSRVYSWGYERGYVKANPCAGVSKFKAKNRERYV-TDKEYQAVLS 176

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
                    +A E       R SD      + + N+   I+  KTG              
Sbjct: 177 VAPL--PVFIAMEIAYLCAARVSDVLSLKWEQIGNDGIFIQQGKTGKKQIKAWSPRLQAA 234

Query: 245 LAMTP--IGKETFFINNDKQKMNATQFSIWFKAKATKAG------VNKSAHGVRKFSATI 296
           +              N    +     F+  +     +AG       + + H + K     
Sbjct: 235 IEKAKQLPKSAYVISNQYGNRYMYKGFNEMWVEARNRAGKISGILTDFTFHDL-KAKGIS 293

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326
             +   ++ +     G KT  Q   Y +  
Sbjct: 294 DYE--GSSRDKQLFSGHKTEGQVLIYDRKV 321


>gi|300214635|gb|ADJ79051.1| Integrase/recombinase, XerD/RipX family [Lactobacillus salivarius
           CECT 5713]
          Length = 297

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 50/269 (18%), Positives = 113/269 (42%), Gaps = 25/269 (9%)

Query: 85  GSLAVNSRISFE---SYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI----QFL 137
             L+ N+  S+      F + +R++    ++++  + I + ++S K+  + A     + +
Sbjct: 18  RGLSENTINSYGIDLKLFLEYLRENEIPSFKQVNKEVIVNYMQSEKNN-NKANSSILRSV 76

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPR 193
           +S+R  F++  +++ +  +P L ++ PK+K    +  TKE++++     +     G + R
Sbjct: 77  SSLRKFFQYLAQEKIIEKDPMLLIDTPKKKQHLPQVLTKEEVEKLLRSPNTGQVLGLRDR 136

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM----- 247
              E +  +GLR S+     ++ L   + +++T  K      V + D  +K +       
Sbjct: 137 AMLELMYATGLRISEIINLKLEDLHLTMGTLQTLGKGHKERIVPVGDEAIKWVNRYLEEA 196

Query: 248 -----TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
                        F+N     +         KA+  KAG+ K  + H +R   AT   + 
Sbjct: 197 RPKLLKQKRSNYLFLNFHGNNLTRQGVWKNLKAEVRKAGIQKNITPHTLRHSFATHILEN 256

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRI 329
           GA    +    G   +   + YT  +++ 
Sbjct: 257 GADLRIVQELLGHADISTTQIYTHLSNKQ 285


>gi|319892482|ref|YP_004149357.1| Tyrosine recombinase XerD [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317162178|gb|ADV05721.1| Tyrosine recombinase XerD [Staphylococcus pseudintermedius
           HKU10-03]
 gi|323464415|gb|ADX76568.1| tyrosine recombinase XerD [Staphylococcus pseudintermedius ED99]
          Length = 295

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 43/275 (15%), Positives = 98/275 (35%), Gaps = 24/275 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR------SGVESRKHTPSSAIQFLT 138
             L+ N+  ++    +  +    +     +     +        +     +  +  +F +
Sbjct: 16  KGLSNNTIAAYRRDLNHYLNYLAEHKVANLNFVDRQMIQEWFGFLHDEGRSAKTIARFTS 75

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRL 194
           ++R   ++A+R+ Y + +P + +E PK   +     +  +++Q      E    G + + 
Sbjct: 76  TIRSFHQFALRENYTSHDPTVLIETPKYDRKLPDVLSIAEVEQLLMAPDESKVNGYRDKT 135

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM------ 247
             E L  +G+R S+     V+ +   +  +K   K      V L +  +  L        
Sbjct: 136 MLELLYATGIRVSELINIEVEDINLMMGFVKVFGKGSKERIVPLGETVIDCLTHYIQNIR 195

Query: 248 ----TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301
                       F+N   + ++        K    KAG+ K  + H +R   AT   + G
Sbjct: 196 PQLLKHTVTHVLFLNLHGKPLSRQGVWKMIKQTGVKAGIMKRLTPHTLRHSFATHLLENG 255

Query: 302 ATAHELMATYGWKTVDQAETYTK-GADRIRLGIKN 335
           A    +    G   +   + YT    ++IR   ++
Sbjct: 256 ADLRAVQDMLGHSDISTTQLYTHITKNQIRKIYQD 290


>gi|307823520|ref|ZP_07653749.1| tyrosine recombinase XerD [Methylobacter tundripaludum SV96]
 gi|307735505|gb|EFO06353.1| tyrosine recombinase XerD [Methylobacter tundripaludum SV96]
          Length = 294

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 56/286 (19%), Positives = 104/286 (36%), Gaps = 24/286 (8%)

Query: 74  LISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFDYRKI---TTKHIRSGVESRKH 128
           LI ++   A W    L+ N+  ++ S      +   D    ++          G      
Sbjct: 6   LIDQFL-DAVWVEQGLSENTLSAYGSDLRIFAKWLKDKPILEVDGGQLSDFLEGRHKEGI 64

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-- 186
              S  + L+S+R  + + +R+  + I+P   +E P       +  ++ D++        
Sbjct: 65  GNRSTARILSSLRRFYGYYIRENSIKIDPTALIESPHIGQPLPKSLSELDVELLLDAPEV 124

Query: 187 --SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT--------IITVE 236
             + G + R   E L  +GLR S+      + +      ++    G          + + 
Sbjct: 125 TNALGFRDRTMLEMLYATGLRVSELVNLKFEQISFRQGVVRIIGKGNKERLVPVGEVAMG 184

Query: 237 LPDGFMKLLAMTPIGK---ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRK 291
             + +M     T +G+   +  F+ N    M    F    K  A KA +NK  S H +R 
Sbjct: 185 WLEEYMVQARKTILGERQCDYLFVTNRADSMTRQAFWHIIKRHAKKAQINKELSPHTLRH 244

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
             AT   + GA    +    G   +   + YT  A R RL   +S+
Sbjct: 245 AFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHIA-RERLKELHSK 289


>gi|293376592|ref|ZP_06622820.1| tyrosine recombinase XerD [Turicibacter sanguinis PC909]
 gi|292644818|gb|EFF62900.1| tyrosine recombinase XerD [Turicibacter sanguinis PC909]
          Length = 305

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 47/262 (17%), Positives = 104/262 (39%), Gaps = 22/262 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDY---RKITTKHIRSGV---ESRKHTPSSAIQFLT 138
             L++N++IS+E    + +    +       +I  +H++  +     R     S  + L+
Sbjct: 20  RGLSLNTKISYERDLTEYLLYLQNQSVHQLDEIRREHVQQYLITLYERNLNTKSVARHLS 79

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRL 194
           ++R   ++ + ++    NPC  +E PK K       + ++++   S ++  +    + + 
Sbjct: 80  AIRSFHQYLMIEKISNTNPCELIESPKLKRHLPEILSIDEVEHLLSSFNTKTVNDIRNKA 139

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLL-------- 245
             E +  SGLR S+  +  +  +  ++  ++   K      V + +   +LL        
Sbjct: 140 MVELMYASGLRVSELLQLKLDDVHLSMMFVRCVGKGDKERIVPIGEVATELLQLYLDTAR 199

Query: 246 -AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302
             +     +  F+N   + M    F    K +A +AG+ K  S H +R   AT   + G 
Sbjct: 200 PKLLKKSNDWLFLNRFGEVMTRQGFWKILKKQAKEAGIEKEISPHKLRHSFATHLIENGV 259

Query: 303 TAHELMATYGWKTVDQAETYTK 324
               +    G   +   + YT 
Sbjct: 260 DLRLVQEMLGHSDISTTQIYTH 281


>gi|160891605|ref|ZP_02072608.1| hypothetical protein BACUNI_04058 [Bacteroides uniformis ATCC 8492]
 gi|317478317|ref|ZP_07937481.1| tyrosine recombinase XerD [Bacteroides sp. 4_1_36]
 gi|156859012|gb|EDO52443.1| hypothetical protein BACUNI_04058 [Bacteroides uniformis ATCC 8492]
 gi|316905476|gb|EFV27266.1| tyrosine recombinase XerD [Bacteroides sp. 4_1_36]
          Length = 317

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 62/298 (20%), Positives = 116/298 (38%), Gaps = 27/298 (9%)

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQII-----RKSGDFDY 111
           +    S  K+  TL  +I +Y +      +L+ N+  ++++   +++           D 
Sbjct: 2   KSEEKSTNKEKQTL--IIRKYHQYLKLEKALSPNTVDAYQTDLQKLLHFLEGEGIAILDT 59

Query: 112 RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
                +H  SG+      P S  + L+ ++  F + V  +Y+  +P   +E PK   +  
Sbjct: 60  TLDDLQHFASGLHDIGIHPRSQARILSGIKSFFHFLVMADYLEGDPSELLEGPKIGFKLP 119

Query: 172 RPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227
              T E++ +  S    G+    + R   E L   GLR S+ C   +  L  +   IK +
Sbjct: 120 EVLTVEEIDRIISAIDLGTNEGQRNRAILETLYSCGLRVSELCNLKISDLYFDEGFIKVE 179

Query: 228 KTGTIIT-VELPDGFMKLLAMTPIGK-----------ETFFINNDKQKMNATQFSIWFKA 275
             G+    V +    +K +    + +           +  F+    + ++        K 
Sbjct: 180 GKGSKQRLVPISSRAIKEIRNWFVDRNGGWKIKKDFEDYVFLARWGKNISRIMVFHLIKE 239

Query: 276 KATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            A KAG+ K  S H  R   AT   + GA    + +  G +++   E YT   DR RL
Sbjct: 240 LAKKAGITKNISPHTFRHSFATHLLEGGANLRAIQSMLGHESIATTEIYTH-IDRHRL 296


>gi|325839425|ref|ZP_08166864.1| tyrosine recombinase XerD [Turicibacter sp. HGF1]
 gi|325490545|gb|EGC92861.1| tyrosine recombinase XerD [Turicibacter sp. HGF1]
          Length = 305

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 47/262 (17%), Positives = 104/262 (39%), Gaps = 22/262 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDY---RKITTKHIRSGV---ESRKHTPSSAIQFLT 138
             L++N++IS+E    + +    +       +I  +H++  +     R     S  + L+
Sbjct: 20  RGLSLNTKISYERDLTEYLLYLQNQSVHQLDEIRREHVQQYLITLYERNLNTKSVARHLS 79

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRL 194
           ++R   ++ + ++    NPC  +E PK K       + ++++   S ++  +    + + 
Sbjct: 80  AIRSFHQYLMIEKISNTNPCELIESPKLKRHLPEILSIDEVEHLLSSFNTKTVNDIRNKA 139

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAM------ 247
             E +  SGLR S+  +  +  +  ++  ++   K      V + +   +LL +      
Sbjct: 140 MVELMYASGLRVSELLQLKLDDVHLSMMFVRCVGKGDKERIVPIGEVATELLQLYLDTAR 199

Query: 248 ---TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302
                   +  F+N   + M    F    K +A +AG+ K  S H +R   AT   + G 
Sbjct: 200 PNLLKKSNDWLFLNRFGEVMTRQGFWKILKKQAKEAGIEKEISPHKLRHSFATHLIENGV 259

Query: 303 TAHELMATYGWKTVDQAETYTK 324
               +    G   +   + YT 
Sbjct: 260 DLRLVQEMLGHSDISTTQIYTH 281


>gi|227890931|ref|ZP_04008736.1| site-specific DNA tyrosine recombinase, XerD [Lactobacillus
           salivarius ATCC 11741]
 gi|227867340|gb|EEJ74761.1| site-specific DNA tyrosine recombinase, XerD [Lactobacillus
           salivarius ATCC 11741]
          Length = 290

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 49/269 (18%), Positives = 113/269 (42%), Gaps = 25/269 (9%)

Query: 85  GSLAVNSRISFE---SYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI----QFL 137
             L+ N+  S+      F + +R++    ++++  + I + +++ K+  + A     + +
Sbjct: 11  RGLSENTINSYGIDLKLFLEYLRENEIPSFKQVNKEVIVNYMQAEKNN-NKANSSILRSV 69

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPR 193
           +S+R  F++  +++ +  +P L ++ PK+K    +  TKE++++     +     G + R
Sbjct: 70  SSLRKFFQYLAQEKIIEKDPMLLIDTPKKKQHLPQVLTKEEVEKLLHSPNTGQVLGLRDR 129

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM----- 247
              E +  +GLR S+     ++ L   + +++T  K      V + D  +K +       
Sbjct: 130 AMLELMYATGLRISEIINLKLEDLHLTMGTLQTLGKGHKERIVPVGDEAIKWVNRYLEEA 189

Query: 248 -----TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
                        F+N     +         KA+  KAG+ K  + H +R   AT   + 
Sbjct: 190 RPKLLKQKRSNYLFLNFHGNNLTRQGVWKNLKAEVRKAGIQKNITPHTLRHSFATHILEN 249

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRI 329
           GA    +    G   +   + YT  +++ 
Sbjct: 250 GADLRIVQELLGHADISTTQIYTHLSNKQ 278


>gi|56707324|ref|YP_169220.1| integrase/recombinase [Francisella tularensis subsp. tularensis
           SCHU S4]
 gi|110669794|ref|YP_666351.1| integrase/recombinase [Francisella tularensis subsp. tularensis
           FSC198]
 gi|224456388|ref|ZP_03664861.1| integrase/recombinase [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|254370002|ref|ZP_04986009.1| site-specific recombinase [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254874160|ref|ZP_05246870.1| integrase/recombinase [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|54114539|gb|AAV29903.1| NT02FT0289 [synthetic construct]
 gi|56603816|emb|CAG44787.1| Integrase/recombinase [Francisella tularensis subsp. tularensis
           SCHU S4]
 gi|110320127|emb|CAL08170.1| Integrase/recombinase [Francisella tularensis subsp. tularensis
           FSC198]
 gi|151568247|gb|EDN33901.1| site-specific recombinase [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254840159|gb|EET18595.1| integrase/recombinase [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|282158450|gb|ADA77841.1| Integrase/recombinase [Francisella tularensis subsp. tularensis
           NE061598]
          Length = 292

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 44/265 (16%), Positives = 89/265 (33%), Gaps = 20/265 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKI---TTKHIRSGVESRKHTPSSAIQFLTSMR 141
             L+ N+  S+ +    +       D   +         S      ++  S  + ++++R
Sbjct: 16  HGLSQNTISSYRTDLKFLQNYFAKTDLISLDFEQLYAFISYRSKNGYSSHSNARMISTLR 75

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFE 197
             + W +       NP   +  PK   +  +  T+ D+++           G + +   E
Sbjct: 76  KFYAWLISTGQTNNNPTAKLTLPKLAKKLPKDMTETDVERLLQAPDMTEDVGIRDKAMLE 135

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDGFMKLLAMTPIGKE--- 253
            +  +GLR S+     +  +  NI  I+    G+    V + +  ++ L           
Sbjct: 136 LMYATGLRVSELVGLNIDDIDINIGVIQVMGKGSKERIVPIGEYALEYLQKYFAEARRSL 195

Query: 254 -------TFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATA 304
                    FI+   +++    F    K  A  AG+  + S H +R   AT   + GA  
Sbjct: 196 SENFKEKAVFISKHAKRITRQSFWHRIKNYALIAGINTDISPHTLRHAFATHLLNHGADL 255

Query: 305 HELMATYGWKTVDQAETYTKGADRI 329
             +    G   V     YT  +   
Sbjct: 256 RSVQLLLGHSNVSTTTIYTHISQNR 280


>gi|170682438|ref|YP_001743215.1| phage integrase family site specific recombinase [Escherichia coli
           SMS-3-5]
 gi|331652781|ref|ZP_08353787.1| putative integrase for prophage [Escherichia coli M718]
 gi|331683632|ref|ZP_08384228.1| putative integrase for prophage [Escherichia coli H299]
 gi|170520156|gb|ACB18334.1| site-specific recombinase, phage integrase family [Escherichia coli
           SMS-3-5]
 gi|284921955|emb|CBG35031.1| phage integrase [Escherichia coli 042]
 gi|331049537|gb|EGI21608.1| putative integrase for prophage [Escherichia coli M718]
 gi|331078584|gb|EGI49786.1| putative integrase for prophage [Escherichia coli H299]
          Length = 341

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 61/330 (18%), Positives = 108/330 (32%), Gaps = 29/330 (8%)

Query: 6   RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
           +LPP V   +        Y  K   R        ES  + A    L     K E   + R
Sbjct: 12  KLPPNVYPNK------YSYVWKPTSR--------ESVTLTAIKDGLAALWKKYEETVNNR 57

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
            +  T   L  ++  SA++  L+  ++  +  +  +++   G      I  +HIR  ++ 
Sbjct: 58  DRAMTFGRLWEKFLASAYYSDLSPRTQKDYLQHQKKLLAVFGKVPADSIKPEHIRRYMDK 117

Query: 126 RKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
           R   + + A    +SM  ++ W   + YV  NPC  V + K K       T ++ Q   S
Sbjct: 118 RGEQSKTQANHEKSSMSRVYSWGYERGYVKANPCAGVSKFKAKNRERYV-TDKEYQAVLS 176

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
                    +A E       R SD      + + N+   I+  KTG              
Sbjct: 177 VAPL--PVFIAMEIAYLCAARVSDVLSLKWEQIGNDGIFIQQGKTGKKQIKAWSPRLQAA 234

Query: 245 LAMTP--IGKETFFINNDKQKMNATQFSIWFKAKATKAG------VNKSAHGVRKFSATI 296
           +              N    +     F+  +     +AG       + + H + K     
Sbjct: 235 IEKAKQLPKSAYVISNQYGNRYMYKGFNEMWVDARNRAGKISGILTDFTFHDL-KAKGIS 293

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326
             +   ++ +     G KT  Q   Y +  
Sbjct: 294 DYE--GSSRDKQLFSGHKTEGQVLIYDRKV 321


>gi|253988692|ref|YP_003040048.1| site-specific tyrosine recombinase XerD [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|211637984|emb|CAR66612.1| tyrosine recombinase xerd [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253780142|emb|CAQ83303.1| tyrosine recombinase xerd [Photorhabdus asymbiotica]
          Length = 303

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 54/284 (19%), Positives = 105/284 (36%), Gaps = 27/284 (9%)

Query: 74  LISEYRKSAHW--GSLAVNSRISFE---SYFDQIIRKSGD--FDYRKITTKHIRSGVESR 126
           LI ++   A W    LA N+ IS+       D  +   G      + I  +   +     
Sbjct: 12  LIEQFL-DAIWLEHDLAENTLISYRLDLQALDNWLVNYGHDLLSVQSIDLQSFLAERVDG 70

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185
            +  SS+ + L++MR LF++  R++  A +P   +  PK      +  +++ ++   +  
Sbjct: 71  GYKASSSARLLSAMRQLFQYFYREKMRADDPTALLSAPKLPKRLPKDLSEKQVEALLNAP 130

Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-------- 234
                   + +   E L   GLR S+     +  +      ++    G            
Sbjct: 131 CTDQPVELRDKAMLEVLYACGLRVSELVGLTLSDVSLRQGVVRVIGKGNKERLVPLGEEA 190

Query: 235 VELPDGFMKLLAMTPIGKETF---FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288
           +   + +++      +   T    F +N  ++M    F    K  A  AG++    S H 
Sbjct: 191 IYWLENYIEYGRDGLLNGATLDVLFPSNRGRQMTRQTFWYRIKHYALLAGIDTERLSPHV 250

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRL 331
           +R   AT   + GA    +    G   +   + YT  A +R+RL
Sbjct: 251 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRL 294


>gi|241667835|ref|ZP_04755413.1| site-specific recombinase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254876378|ref|ZP_05249088.1| site-specific recombinase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254842399|gb|EET20813.1| site-specific recombinase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 292

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 42/265 (15%), Positives = 88/265 (33%), Gaps = 20/265 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKI---TTKHIRSGVESRKHTPSSAIQFLTSMR 141
             L+ N+  S+ +    +       +   +         S      ++  S  + ++++R
Sbjct: 16  HGLSQNTISSYRTDLKFLQSYFSQVELINLDFEQLYAFISYRSKNGYSSRSNARMISTLR 75

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFE 197
             + W +       NP   +  PK      +  T+ D+++           G + +   E
Sbjct: 76  KFYNWLISTGQATTNPTTKLTLPKLAKRLPKDMTEVDVERLLQAPDLTDDIGIRDKAMLE 135

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDGFMKLLAMTPIGKE--- 253
            +  +GLR S+        +  N+  I+    G+    V + +  ++ L           
Sbjct: 136 LMYATGLRVSELVGLNTNDIDLNVGVIQVMGKGSKERIVPIGEYALEYLHKYFEESRESL 195

Query: 254 -------TFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATA 304
                    FI+   +++    F    K+ A  AG+  + S H +R   AT   + GA  
Sbjct: 196 AKNFKEKAVFISKHSKRITRQSFWHRIKSYALIAGINTDISPHTLRHAFATHLLNHGADL 255

Query: 305 HELMATYGWKTVDQAETYTKGADRI 329
             +    G   V     YT  +   
Sbjct: 256 RSVQLLLGHSNVSTTTIYTHISQNR 280


>gi|319900751|ref|YP_004160479.1| tyrosine recombinase XerD subunit [Bacteroides helcogenes P 36-108]
 gi|319415782|gb|ADV42893.1| tyrosine recombinase XerD subunit [Bacteroides helcogenes P 36-108]
          Length = 317

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 55/275 (20%), Positives = 104/275 (37%), Gaps = 24/275 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVESRK 127
           +I +Y +      SL+ N+  ++++  ++++R   D             +   +G+    
Sbjct: 16  IIRKYNQYLRLEKSLSPNTLDAYQTDLEKLLRFLEDEKIDILAVTLDDLQRFTAGLHDIG 75

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
             P S  + L+ ++  F + V   Y+  +P   +E PK   +     T E++ +  +   
Sbjct: 76  IHPRSQARILSGIKSFFHFLVLAGYLENDPSELLEGPKIGFKLPEVLTVEEIDRIIAAID 135

Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-VEL----- 237
               EG + R   E L   GLR S+ C   +  L  N   IK +  G+    V +     
Sbjct: 136 MNTNEGQRNRAILETLYSCGLRVSELCNLKISDLYFNEGFIKVEGKGSKQRLVPISHRAI 195

Query: 238 ------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289
                  D   +   +    ++  F+      ++      + K  A KAG+ KS   H  
Sbjct: 196 TEITNWLDDRKERWKIKKDFEDYVFLARWGNGISRIMIFHFIKELAEKAGITKSISPHTF 255

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           R   AT   + GA    +    G +++   E YT 
Sbjct: 256 RHSFATHLLEGGANLRAIQCMLGHESIATTEIYTH 290


>gi|134301363|ref|YP_001121331.1| tyrosine recombinase/integrase XerD [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|187931093|ref|YP_001891077.1| tyrosine recombinase XerD [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|134049140|gb|ABO46211.1| tyrosine recombinase/integrase XerD [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|187712002|gb|ACD30299.1| tyrosine recombinase XerD [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 292

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 44/265 (16%), Positives = 89/265 (33%), Gaps = 20/265 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKI---TTKHIRSGVESRKHTPSSAIQFLTSMR 141
             L+ N+  S+ +    +       D   +         S      ++  S  + ++++R
Sbjct: 16  HGLSQNTISSYRTDLKFLQNYFAKTDLISLDFEQLYAFISYRSKNGYSSHSNARMISTLR 75

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFE 197
             + W +       NP   +  PK   +  +  T+ D+++           G + +   E
Sbjct: 76  KFYAWLISTGQTNNNPTAKLTLPKLAKKLPKDMTETDVERLLQAPDMTEDVGIRDKAMLE 135

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDGFMKLLAMTPIGKE--- 253
            +  +GLR S+     +  +  NI  I+    G+    V + +  ++ L           
Sbjct: 136 LMYATGLRVSELVGLNIDDIDINIGVIQVMGKGSKERIVPIGEYALEYLQKYFAEARRSL 195

Query: 254 -------TFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATA 304
                    FI+   +++    F    K  A  AG+  + S H +R   AT   + GA  
Sbjct: 196 SKNFKEKAVFISKHAKRITRQSFWHRIKNYALIAGINTDISPHTLRHAFATHLLNHGADL 255

Query: 305 HELMATYGWKTVDQAETYTKGADRI 329
             +    G   V     YT  +   
Sbjct: 256 RSVQLLLGHSNVSTTTIYTHISQNR 280


>gi|291280177|ref|YP_003497012.1| tyrosine recombinase [Deferribacter desulfuricans SSM1]
 gi|290754879|dbj|BAI81256.1| tyrosine recombinase [Deferribacter desulfuricans SSM1]
          Length = 302

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 46/270 (17%), Positives = 98/270 (36%), Gaps = 25/270 (9%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIR--KSGDFDYRKIT---TKHIRSGVESRKHTPSS 132
           Y  S     ++ N+  S+ +  + ++   K  D   ++I     +   + +  +  + SS
Sbjct: 13  YLISER--QVSSNTVKSYLNDLNDLVSFIKDEDKSLKEIDYFALRMFVAYLYDKGFSKSS 70

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKSFWSE 188
             + + ++R  FK+ +++  +  NP   ++ PK+  +    +  + +    +        
Sbjct: 71  IERKIATLRSFFKFLIKRGLIEDNPARMIKFPKKDKKLFTVFDIDTIFSLLELPDKETPS 130

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM 247
           G +  L  EFL  +G+R S+     +  +      ++   K   +  + L D  M L+  
Sbjct: 131 GIRDALILEFLYGTGVRVSELVNIKLDDIDFGGMRVRIFGKGKKMRVIPLSDYIMDLIKK 190

Query: 248 -----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294
                        +  +  FIN     +              KAG+  N S H  R   A
Sbjct: 191 YLSVRENIVQKGIVNTDHLFINKFGTALTDRSVRRIVDKYLKKAGLPLNYSPHSFRHTFA 250

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324
           T   + GA    +    G  ++   + YT 
Sbjct: 251 THLLENGADLRTIQKLLGHSSLATTQKYTH 280


>gi|300941166|ref|ZP_07155675.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 21-1]
 gi|294490096|gb|ADE88852.1| putative integrase for prophage CP-933U [Escherichia coli IHE3034]
 gi|300454112|gb|EFK17605.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 21-1]
          Length = 341

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 61/330 (18%), Positives = 107/330 (32%), Gaps = 29/330 (8%)

Query: 6   RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
           +LPP V   +        Y  K   R        ES  + A    L     K E   + R
Sbjct: 12  KLPPNVYPNK------YSYVWKPTSR--------ESVTLTAIKDGLAALWKKYEETVNNR 57

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
            +  T   L  ++  SA +  L+  ++  +  +  +++   G      I  +HIR  ++ 
Sbjct: 58  DRAMTFGRLWEKFLASACYSDLSPRTQKDYLQHQKKLLAVFGKVPADSIKPEHIRRYMDK 117

Query: 126 RKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
           R   + + A    +SM  ++ W   + YV  NPC  V + K K       T ++ Q   S
Sbjct: 118 RGEQSKTQANHEKSSMSRVYSWGYERGYVKANPCAGVSKFKAKNRERYV-TDKEYQAVLS 176

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
                    +A E       R SD      + + N+   I+  KTG              
Sbjct: 177 VAPL--PVFIAMEIAYLCAARVSDVLSLKWEQIGNDGIFIQQGKTGKKQIKAWSPRLQAA 234

Query: 245 LAMTP--IGKETFFINNDKQKMNATQFSIWFKAKATKAG------VNKSAHGVRKFSATI 296
           +              N    +     F+  +     +AG       + + H + K     
Sbjct: 235 VEKAKQLPKSAYVISNQYGNRYMYKGFNEMWVEARNRAGKVSGILTDFTFHDL-KAKGIS 293

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326
             +   ++ +     G KT  Q   Y +  
Sbjct: 294 DYE--GSSRDKQLFSGHKTEGQVLIYDRKV 321


>gi|82701881|ref|YP_411447.1| tyrosine recombinase XerD [Nitrosospira multiformis ATCC 25196]
 gi|82409946|gb|ABB74055.1| Tyrosine recombinase XerD [Nitrosospira multiformis ATCC 25196]
          Length = 303

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 54/271 (19%), Positives = 101/271 (37%), Gaps = 26/271 (9%)

Query: 86  SLAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFL 137
            L+ N+  S+ S  +Q       +K  D  +  +T   +   +  R       S+  + L
Sbjct: 23  GLSRNTMESYRSDLEQFGDWFARQKPDDSSFLTVTHSDLLGFMTGRFSAGMKASTTSREL 82

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPR 193
           +S++  +++ +RQ  +  +P L+++ P+         T+ D++         +  G + R
Sbjct: 83  SSLKRFYRFLLRQGKINADPTLNIDTPRLPRNLPVSLTEADVEALLGAPDVTFPLGLRDR 142

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPI-- 250
              E L  SGLR S+        +  ++  ++   K G      L +  ++ +       
Sbjct: 143 AMLEVLYASGLRVSELVSLESGQISLDMGVVRIMGKGGKERLTPLGEEALEWMVRYIKEI 202

Query: 251 --------GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
                        F+      M    F    K  A +AG+ K  S HG+R   AT   + 
Sbjct: 203 RPGLLDGKSSNALFVTYRGAGMTRQAFWYLIKRYARQAGITKPLSPHGLRHAFATHLLNH 262

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRL 331
           GA    +    G   +   + YT  A R RL
Sbjct: 263 GADLRVVQLLLGHADISTTQIYTHVA-RERL 292


>gi|86133541|ref|ZP_01052123.1| phage integrase family protein [Polaribacter sp. MED152]
 gi|85820404|gb|EAQ41551.1| phage integrase family protein [Polaribacter sp. MED152]
          Length = 298

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 51/279 (18%), Positives = 98/279 (35%), Gaps = 25/279 (8%)

Query: 71  LKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGV---- 123
            K  I++Y+        L+ N+  S+    +++ +     D +   I             
Sbjct: 3   WKNAINDYQLFLKIERGLSQNTIDSYTRDLNKLTQFLNVNDIEISPIKIDKEIVQQFIYD 62

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
            ++   P S  + ++ +R  F + V +++   NP   +E PK   +     +++++    
Sbjct: 63  VAKGVNPRSQARIISGLRSFFDYLVFEDFRETNPTDLIEAPKIGRKLPDTLSEDEINSLI 122

Query: 184 SF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELP 238
                   +G + R   E L   GLR S+     +  L  +  F   T K      V + 
Sbjct: 123 QSIDLSHPQGERNRTILETLYSCGLRVSELITLKISDLYFDEGFIKVTGKGNKERFVPIH 182

Query: 239 DGFMKLL---------AMTPIGK--ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--S 285
               K +          + P+    +T F+N   + +         K  A K  +NK  S
Sbjct: 183 YNAQKYITTYIHQIRNQVKPVKSFEDTLFLNRRGKGLTRQMIFTILKDLAIKIDLNKKIS 242

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            H +R   AT     GA    +    G +++   E Y  
Sbjct: 243 PHTLRHSFATHLLKNGADLRAIQQMLGHESITTTEVYVH 281


>gi|325124215|gb|ADY83738.1| site-specific tyrosine recombinase [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 306

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 54/292 (18%), Positives = 107/292 (36%), Gaps = 20/292 (6%)

Query: 57  KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF---DQIIRKSGDFDYRK 113
           K+  I SP + P  L +L   +R      +++ ++R ++ S      ++ +KS   +++ 
Sbjct: 4   KKPRIPSPVQIPEHLSFL-QGFRDYLVAQTVSPHTRNAYLSDLIQCSELHKKSALPEWKS 62

Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
                +   +     +P S  + L+++R  +K+   Q+  + NP  +   PK      + 
Sbjct: 63  DDIADVLIELTKAGKSPRSIARCLSALRQFYKFLREQKLRSDNPVATHHSPKIGRALPKD 122

Query: 174 WTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQK 228
            ++ED++            G + R  FE L   GLR S+     ++ +      ++ T K
Sbjct: 123 LSEEDVEALIQAPDINTALGLRDRAMFEVLYACGLRVSELLNLRLELINLKQGYLRITGK 182

Query: 229 TGTIITVELPDGFMKLLAMT---------PIGKETFFINNDKQKMNATQFSIWFKAKATK 279
                 V L     + +                +  F+      M+   F    K  A +
Sbjct: 183 GNKERLVPLGQFACEWVERYLQDARPQLYKSSTDYLFLTQHGGIMSRQNFWYAIKRYALQ 242

Query: 280 AGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           A +    S H +R   AT   + GA    +    G   +   + YT  A   
Sbjct: 243 ANIQAELSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVR 294


>gi|117624154|ref|YP_853067.1| putative phage integrase [Escherichia coli APEC O1]
 gi|115513278|gb|ABJ01353.1| putative phage integrase [Escherichia coli APEC O1]
          Length = 341

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 61/330 (18%), Positives = 108/330 (32%), Gaps = 29/330 (8%)

Query: 6   RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
           +LPP V   +        Y  K   R        ES  + A    L     K E   + R
Sbjct: 12  KLPPNVYPNK------YSYVWKPTSR--------ESVTLTAIKDGLAALWKKYEETVNNR 57

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
            +  T   L  ++  SA++  L+  ++  +  +  +++   G      I  +HIR  ++ 
Sbjct: 58  DRAMTFGRLWEKFLASAYYSDLSPRTQKDYLQHQKKLLAVFGKVPADSIKPEHIRRYMDK 117

Query: 126 RKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
           R   + + A    +SM  ++ W   + YV  NPC  V + K K       T ++ Q   S
Sbjct: 118 RGEQSKTQANHEKSSMSRVYSWGYERGYVKANPCAGVSKFKAKNRERYV-TDKEYQAVLS 176

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
                    +A E       R SD      + + N+   I+  KTG              
Sbjct: 177 VAPL--PVFIAMEIAYLCAARVSDVLSLKWEQIGNDGIFIQQGKTGKKQIKAWSPRLQAA 234

Query: 245 LAMTP--IGKETFFINNDKQKMNATQFSIWFKAKATKAG------VNKSAHGVRKFSATI 296
           +              N    +     F+  +     +AG       + + H + K     
Sbjct: 235 IEKAKQLPTSAYVISNQYGNRYMYKGFNEMWVDARNRAGKISGILTDFTFHDL-KAKGIS 293

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326
             +   ++ +     G KT  Q   Y +  
Sbjct: 294 DYE--GSSRDKQLFSGHKTEGQVLIYDRKV 321


>gi|46143544|ref|ZP_00135036.2| COG4974: Site-specific recombinase XerD [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126209006|ref|YP_001054231.1| site-specific tyrosine recombinase XerD [Actinobacillus
           pleuropneumoniae L20]
 gi|303253035|ref|ZP_07339187.1| site-specific tyrosine recombinase XerD [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|307246462|ref|ZP_07528535.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar
           1 str. 4074]
 gi|307248587|ref|ZP_07530602.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar
           2 str. S1536]
 gi|307255445|ref|ZP_07537252.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar
           9 str. CVJ13261]
 gi|307257614|ref|ZP_07539374.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar
           10 str. D13039]
 gi|307259897|ref|ZP_07541611.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar
           11 str. 56153]
 gi|307262027|ref|ZP_07543682.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar
           12 str. 1096]
 gi|126097798|gb|ABN74626.1| tyrosine recombinase XerD [Actinobacillus pleuropneumoniae serovar
           5b str. L20]
 gi|302648099|gb|EFL78303.1| site-specific tyrosine recombinase XerD [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|306852666|gb|EFM84898.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar
           1 str. 4074]
 gi|306854937|gb|EFM87125.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar
           2 str. S1536]
 gi|306861629|gb|EFM93616.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar
           9 str. CVJ13261]
 gi|306863917|gb|EFM95840.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar
           10 str. D13039]
 gi|306866067|gb|EFM97941.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar
           11 str. 56153]
 gi|306868310|gb|EFN00132.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar
           12 str. 1096]
          Length = 297

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 45/284 (15%), Positives = 95/284 (33%), Gaps = 24/284 (8%)

Query: 71  LKWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVES 125
           L  +I ++  +      L+ N+  ++    +                    +    G   
Sbjct: 4   LDPIIEQFLDTLWQEHGLSENTSAAYRLDLESFSEWLPTPKAFLTLDHFDLQAFLGGRLE 63

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQ 181
             +  +S+ + L+ +R  F++   + Y   +P L++  P++     +  ++E +      
Sbjct: 64  LGYKATSSARMLSCLRKFFRFLYTENYRQDDPTLTLTSPRKPAHLPKSLSEEQVMDLLDS 123

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240
             +      + +   E L  +GLR S+     + +L      ++   K      V + + 
Sbjct: 124 PNTLDPIELRDKAMLELLYATGLRVSELVSLSIDNLSLRQGVVRVVGKGDKERLVPIGEE 183

Query: 241 FMKLLAMTPIGKETFFINN----------DKQKMNATQFSIWFKAKATKAGVN---KSAH 287
               +           +NN            Q+M    F    K  A  AG++    S H
Sbjct: 184 AGYWIQEFFRYGRAILLNNLQSDVVFPSRRGQQMTRQTFWHRIKHYAVLAGIDSEKLSPH 243

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            +R   AT   + GA    +    G   +   + YT  A + RL
Sbjct: 244 VLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVA-KARL 286


>gi|281601440|gb|ADA74424.1| putative phage integrase [Shigella flexneri 2002017]
 gi|313649784|gb|EFS14207.1| phage integrase family protein [Shigella flexneri 2a str. 2457T]
 gi|315618062|gb|EFU98654.1| phage integrase family protein [Escherichia coli 3431]
 gi|320193246|gb|EFW67884.1| Putative integrase [Escherichia coli WV_060327]
 gi|332091590|gb|EGI96671.1| phage integrase family protein [Shigella dysenteriae 155-74]
          Length = 341

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 61/330 (18%), Positives = 108/330 (32%), Gaps = 29/330 (8%)

Query: 6   RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
           +LPP V   +        Y  K   R        ES  + A    L     K E   + R
Sbjct: 12  KLPPNVYPNK------YSYVWKPTSR--------ESVTLTAIKDGLAALWKKYEETVNNR 57

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
            +  T   L  ++  SA++  L+  ++  +  +  +++   G      I  +HIR  ++ 
Sbjct: 58  DRAMTFGRLWEKFLASAYYSDLSPRTQKDYLQHQKKLLAVFGKVPADSIKPEHIRRYMDK 117

Query: 126 RKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
           R   + + A    +SM  ++ W   + YV  NPC  V + K K       T ++ Q   S
Sbjct: 118 RGEQSKTQANHEKSSMSRVYSWGYERGYVKANPCAGVSKFKAKNRERYV-TDKEYQAVLS 176

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
                    +A E       R SD      + + N+   I+  KTG              
Sbjct: 177 VAPL--PVFIAMEIAYLCAARVSDVLSLKWEQIGNDGIFIQQGKTGKKQIKAWSPRLQAA 234

Query: 245 LAMTP--IGKETFFINNDKQKMNATQFSIWFKAKATKAG------VNKSAHGVRKFSATI 296
           +              N    +     F+  +     +AG       + + H + K     
Sbjct: 235 IEKAKQLPTSAYVISNQYGNRYMYKGFNEMWVEARNRAGKISGILTDFTFHDL-KAKGIS 293

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326
             +   ++ +     G KT  Q   Y +  
Sbjct: 294 DYE--GSSRDKQLFSGHKTEGQVLIYDRKV 321


>gi|257898863|ref|ZP_05678516.1| phage integrase [Enterococcus faecium Com15]
 gi|293570233|ref|ZP_06681302.1| tyrosine recombinase XerD [Enterococcus faecium E980]
 gi|257836775|gb|EEV61849.1| phage integrase [Enterococcus faecium Com15]
 gi|291609640|gb|EFF38901.1| tyrosine recombinase XerD [Enterococcus faecium E980]
          Length = 295

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 45/275 (16%), Positives = 103/275 (37%), Gaps = 26/275 (9%)

Query: 75  ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRK-------ITTKHIRSGVESR 126
           I++Y    +    L+ N+R S+E   +Q +    +            +  + +    E +
Sbjct: 5   INDYLHYLNIERGLSANTRQSYERDLEQYLHFLEEQKVASWQDVDRFLVIRFLEKMHEEK 64

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
           K T ++  + ++S+R   ++  ++     +P   ++ PK+  +     T  ++++     
Sbjct: 65  KAT-ATVTRMISSLRRFHQFLRQERITDHDPMQHIDTPKKAQKLPSTLTLAEVEKLIEAP 123

Query: 187 S----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241
                 G + R   E +  +G+R S+     +  L  ++  ++T  K      + L D  
Sbjct: 124 DTTKTLGIRDRAILEVMYATGMRVSELIGLKLGDLHLSLGLVQTVGKGDKERIIPLGDYA 183

Query: 242 MKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289
           ++ L                +   F+NN  + ++        K    +AG+ K  + H +
Sbjct: 184 IQWLERYLDEARPLLVKDASEMHVFVNNHGKGLSRQGIWKNLKQLVREAGIYKEVTPHTL 243

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           R   AT   + GA    +    G   +   + YT 
Sbjct: 244 RHSFATHLLENGADLRTVQELLGHADISTTQIYTH 278


>gi|190150873|ref|YP_001969398.1| tyrosine recombinase XerD [Actinobacillus pleuropneumoniae serovar
           7 str. AP76]
 gi|307264224|ref|ZP_07545815.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar
           13 str. N273]
 gi|189916004|gb|ACE62256.1| tyrosine recombinase XerD [Actinobacillus pleuropneumoniae serovar
           7 str. AP76]
 gi|306870470|gb|EFN02223.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar
           13 str. N273]
          Length = 297

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 45/284 (15%), Positives = 95/284 (33%), Gaps = 24/284 (8%)

Query: 71  LKWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVES 125
           L  +I ++  +      L+ N+  ++    +                    +    G   
Sbjct: 4   LDPIIEQFLDTLWQEHGLSENTSAAYRLDLESFSEWLPTPKAFLTLDHFDLQAFLGGRLE 63

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQ 181
             +  +S+ + L+ +R  F++   + Y   +P L++  P++     +  ++E +      
Sbjct: 64  LGYKATSSARMLSCLRKFFRFLYTENYRQDDPTLTLTSPRKPAHLPKSLSEEQVMDLLDS 123

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240
             +      + +   E L  +GLR S+     + +L      ++   K      V + + 
Sbjct: 124 PNTLDPIELRDKAMLELLYATGLRVSELVSLSIDNLSLRQGVVRVVGKGDKERLVPIGEE 183

Query: 241 FMKLLAMTPIGKETFFINN----------DKQKMNATQFSIWFKAKATKAGVN---KSAH 287
               +           +NN            Q+M    F    K  A  AG++    S H
Sbjct: 184 AGYWIQEFFQYGRAILLNNLQSDVVFPSRRGQQMTRQTFWHRIKHYAVLAGIDSEKLSPH 243

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            +R   AT   + GA    +    G   +   + YT  A + RL
Sbjct: 244 VLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVA-KARL 286


>gi|239827607|ref|YP_002950231.1| site-specific tyrosine recombinase XerD [Geobacillus sp. WCH70]
 gi|239807900|gb|ACS24965.1| tyrosine recombinase XerD [Geobacillus sp. WCH70]
          Length = 299

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 43/266 (16%), Positives = 100/266 (37%), Gaps = 26/266 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDF-------DYRKITTKHIRSGVESRKHTPSSAIQFL 137
            +LA N+ IS+E    +               D  ++        ++ + ++P +  + +
Sbjct: 17  RNLAKNTIISYERDLKKYAHYLRHVEQIQSWNDVTRLHIMQFLKFLKEKGNSPKTIARHI 76

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KSFWSEGSQPR 193
            S+R   ++ +R++    +P + +E P+ +    +  + E+++      K+    G + +
Sbjct: 77  ASIRSFHQFLLREKVAEQDPSVHIESPQMERTLPKVLSLEEVEALLEAPKTNTPIGVRDK 136

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-------------ITVELPDG 240
              E L  +G+R S+     +  +   +  ++    G               + V L   
Sbjct: 137 AMLELLYATGMRVSELVNLNLSDVHLTMGFVRCYGKGKKERIVPVGSMALNALKVYLETA 196

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISA 298
             KL+       +  F+N+  +++    F    K  A +A + K  + H +R   AT   
Sbjct: 197 RPKLINSKKRTTDALFLNHHGERLTRQGFWKILKKLAKEANIEKELTPHTLRHSFATHLL 256

Query: 299 DAGATAHELMATYGWKTVDQAETYTK 324
           + GA    +    G   +   + YT 
Sbjct: 257 ENGADLRAVQELLGHADISTTQIYTH 282


>gi|319789925|ref|YP_004151558.1| integrase family protein [Thermovibrio ammonificans HB-1]
 gi|317114427|gb|ADU96917.1| integrase family protein [Thermovibrio ammonificans HB-1]
          Length = 271

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 48/250 (19%), Positives = 89/250 (35%), Gaps = 13/250 (5%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLF 144
             L+  +   + +  +  I+  GD D   + T  +         +PS   + ++++   F
Sbjct: 16  KELSPRTVKEYRNDLNLFIKTVGDKDVSAVKTADLMLFRGRMGCSPSLINRRISALNTFF 75

Query: 145 KWAVRQEYVAINPCL-SVERPKRKTEGIRPWTKEDMQQ-FKSFWSEGSQPRLAFEFLLYS 202
            + V  E +  NP   S+   K K       T E++++  ++    G +  L F+ +LY 
Sbjct: 76  NFLVDMEIIDKNPVKPSLRIKKVKQRVPEALTPEEVEKVLEAARKRGERDYLMFKTILYC 135

Query: 203 GLRCSDSCRAGVQ---HLQNNIFSIKTQKTGTIITVELPDGFMKLL--AMTPIGKETFFI 257
           GLR S+      +     +         K G    + L   F + L      +  E  F 
Sbjct: 136 GLRISELLSLTKESIVEFKGRPVLKVIGKGGKERFIPLSRSFARELISYAERVEGEKLF- 194

Query: 258 NNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVD 317
                 ++       F     + GV    H +R   AT+  D G     + A  G  + +
Sbjct: 195 -----PLSYQGAKYIFNRVRDETGVPIHPHKLRHTFATVLVDRGVDIRVIQAFLGHASPN 249

Query: 318 QAETYTKGAD 327
            +  Y K  D
Sbjct: 250 TSARYAKVRD 259


>gi|312110344|ref|YP_003988660.1| tyrosine recombinase XerD [Geobacillus sp. Y4.1MC1]
 gi|311215445|gb|ADP74049.1| tyrosine recombinase XerD [Geobacillus sp. Y4.1MC1]
          Length = 299

 Score =  150 bits (378), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 41/266 (15%), Positives = 96/266 (36%), Gaps = 26/266 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDF-------DYRKITTKHIRSGVESRKHTPSSAIQFL 137
            +LA N+ +S+E    +               D  ++        ++ +  +P +  + +
Sbjct: 17  RNLAKNTIVSYERDLKKYAHYLRHVEQIQSWNDVSRLHIMQFLKFLKEKGSSPKTIARHI 76

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KSFWSEGSQPR 193
            S+R   ++ +R++    +P + +E P+ +    +  + E+++      K+    G + +
Sbjct: 77  ASIRSFHQFLLREKIADQDPSVHIESPQMERTLPKVLSLEEVEALLEAPKTNTPIGIRDK 136

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVEL----PDGFMKLLAMT 248
              E L  +G+R S+     +  +   +  ++   K      V +     D     L   
Sbjct: 137 AMIELLYATGMRVSELVNLNLSDVHLTMGFVRCYGKGNKERIVPIGSMALDALKAYLETA 196

Query: 249 --------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISA 298
                       +  F+N+   ++    F    K  A +A + K  + H +R   AT   
Sbjct: 197 RPKLINPKKRATDALFLNHYGDRLTRQGFWKILKKLAKEANIEKELTPHTLRHSFATHLL 256

Query: 299 DAGATAHELMATYGWKTVDQAETYTK 324
           + GA    +    G   +   + YT 
Sbjct: 257 ENGADLRAVQELLGHADISTTQIYTH 282


>gi|326791364|ref|YP_004309185.1| integrase family protein [Clostridium lentocellum DSM 5427]
 gi|326542128|gb|ADZ83987.1| integrase family protein [Clostridium lentocellum DSM 5427]
          Length = 296

 Score =  150 bits (378), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 48/275 (17%), Positives = 104/275 (37%), Gaps = 27/275 (9%)

Query: 75  ISEYRKSAHW-----GSLAVNSRISFES---YFDQIIRKSGDFDYRKITTKHIRSGVESR 126
           + EY  S  +        + N+  S+E    YF++ + + G  + + +T + I+  +E  
Sbjct: 1   MEEYITSFLYYLKHIKRASDNTVQSYERDLRYFERYVEEQGKIEIQSLTDQQIKVYLEHM 60

Query: 127 KH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM---- 179
           K    + ++  + L S+R   ++ V+++ +  NP   +  PK + +  R  ++E +    
Sbjct: 61  KDEEKSTATISRTLASIRAFCQYLVKEQVLNENPARLIALPKIEKKAPRILSQEQISSLL 120

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239
           +Q     ++G + R   E L  +G+R S+        +      I  +      T+ +  
Sbjct: 121 EQPNKKDTKGIRDRAMLELLYATGIRVSELISLKTTDINLQQGYIICRDAQKERTIPIGK 180

Query: 240 GF----------MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287
                       ++ + +     +T F+N +   M    F    K  A  A +    + H
Sbjct: 181 SAISALNMYLGEVRHILIRSANDKTLFVNCNGYPMTRQGFWKILKTYANAAHIQGEITPH 240

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
            +R   A      GA    +    G   +   + Y
Sbjct: 241 MLRHSFAAHLVQNGANLKSVQQMLGHSDISTTQVY 275


>gi|307565005|ref|ZP_07627522.1| putative tyrosine recombinase XerD [Prevotella amnii CRIS 21A-A]
 gi|307346318|gb|EFN91638.1| putative tyrosine recombinase XerD [Prevotella amnii CRIS 21A-A]
          Length = 310

 Score =  150 bits (378), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 45/262 (17%), Positives = 93/262 (35%), Gaps = 22/262 (8%)

Query: 85  GSLAVNSRISFESYFDQII-----RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
              + ++  ++    +++       K    D R    +   + +        S  + L+ 
Sbjct: 23  KGYSEHTIDAYMRDIEKLSSFLEAEKIDVLDVRLEDLERFTACMSELGIGARSLSRVLSG 82

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLA 195
           +R  +++ +   Y+ I+P   +E PK+        +  ++    +       EG + +  
Sbjct: 83  IRHFYRFLILDGYLEIDPTELLESPKQPKHLPEVLSTAEVDIILNSIDLTKWEGQRNKAI 142

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDGFMKLL--------- 245
            E L   GLR S+     + +L      ++    G+    V +    ++ L         
Sbjct: 143 IEVLFSCGLRVSELTSLKISNLYFQEQYVRIMGKGSKERLVPISPRAIEELNYWFLDRSQ 202

Query: 246 -AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302
             +     +  F+N     +  T   I  K  A  AG+ K  S H +R   AT   + GA
Sbjct: 203 MKIKEGEDDYVFLNRRGSHLTRTMILIMLKRYAYAAGIKKTISPHTLRHSFATALLEGGA 262

Query: 303 TAHELMATYGWKTVDQAETYTK 324
               + A  G +++   E YT 
Sbjct: 263 DLRSIQAMLGHESIVTTELYTH 284


>gi|299538357|ref|ZP_07051640.1| tyrosine recombinase xerD [Lysinibacillus fusiformis ZC1]
 gi|298725944|gb|EFI66536.1| tyrosine recombinase xerD [Lysinibacillus fusiformis ZC1]
          Length = 300

 Score =  150 bits (378), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 45/266 (16%), Positives = 98/266 (36%), Gaps = 27/266 (10%)

Query: 85  GSLAVNSRISFESYFDQ----IIRKSGDFDYRKITT----KHIRSGVESRKHTPSSAIQF 136
             L+VN+  S+    +     +    G  D+  +      +H+       K + + A + 
Sbjct: 19  RQLSVNTLASYRRDLESYVHFLKEAEGMSDFSVVERTTILRHLEQLRAQGKTSRTVA-RH 77

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQP 192
           ++S+R   ++ +R++    +P + +E P  + +     + E+++   +       +G + 
Sbjct: 78  ISSIRSFHQFLLREKRAETDPTVHLEMPTIEQKLPNILSIEEIEALLTAPNKSKPQGIRD 137

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIG 251
               E L  SG+R S+     +  +   +  ++   K G    + L    +  +     G
Sbjct: 138 LAMLELLYGSGMRISELIALDLADIHLTMGFVRVFGKGGKERIIPLGKSALSAINAYLNG 197

Query: 252 K-----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISA 298
                       + FFIN   +++         K  A KAG+    + H +R   AT   
Sbjct: 198 ARGQLQGKYPKTDAFFINQRGKRLTRQGCWKLMKEHALKAGIQHELTPHTLRHSFATHLV 257

Query: 299 DAGATAHELMATYGWKTVDQAETYTK 324
           + GA    +    G   +   + YT 
Sbjct: 258 ENGADLRAVQEMLGHADISTTQIYTH 283


>gi|194435415|ref|ZP_03067602.1| site-specific recombinase, phage integrase family [Shigella
           dysenteriae 1012]
 gi|194416345|gb|EDX32527.1| site-specific recombinase, phage integrase family [Shigella
           dysenteriae 1012]
          Length = 341

 Score =  150 bits (378), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 61/330 (18%), Positives = 108/330 (32%), Gaps = 29/330 (8%)

Query: 6   RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
           +LPP V   +        Y  K   R        ES  + A    L     K E   + R
Sbjct: 12  KLPPNVYPNK------YSYVWKPTSR--------ESVTLTAIKDGLAALWKKYEETVNNR 57

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
            +  T   L  ++  SA++  L+  ++  +  +  +++   G      I  +HIR  ++ 
Sbjct: 58  DRAMTFGRLWEKFLASAYYSDLSPRTQKDYLQHQKKLLAVFGKVPADSIKPEHIRRYMDK 117

Query: 126 RKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
           R   + + A    +SM  ++ W   + YV  NPC  V + K K       T ++ Q   S
Sbjct: 118 RGEQSKTQANHEKSSMSRVYSWGYERGYVKANPCAGVSKFKAKNRERYV-TDKEYQAVLS 176

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
                    +A E       R SD      + + N+   I+  KTG              
Sbjct: 177 VAPL--PVFIAMEIAYLCAARVSDVLSLKWEQIGNDGIFIQQGKTGKKQIKAWSPRLQAA 234

Query: 245 LAMTP--IGKETFFINNDKQKMNATQFSIWFKAKATKAG------VNKSAHGVRKFSATI 296
           +              N    +     F+  +     +AG       + + H + K     
Sbjct: 235 IEKAKQLPTSAYVISNQYGNRYMYKGFNEMWVEARNRAGKISGILTDFTFHDL-KAKGIS 293

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326
             +   ++ +     G KT  Q   Y +  
Sbjct: 294 DYE--GSSRDKQLFSGHKTEGQVLIYDRKV 321


>gi|167763873|ref|ZP_02436000.1| hypothetical protein BACSTE_02254 [Bacteroides stercoris ATCC
           43183]
 gi|167697989|gb|EDS14568.1| hypothetical protein BACSTE_02254 [Bacteroides stercoris ATCC
           43183]
          Length = 316

 Score =  150 bits (378), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 58/281 (20%), Positives = 103/281 (36%), Gaps = 24/281 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQII-----RKSGDFDYRKITTKHIRSGVESRK 127
           +I +Y++      +L+ N+  ++ +   +++           D      +   +G+    
Sbjct: 16  IIRKYQQYLKLEKALSPNTLDAYMTDLQKLLHFLEGENIEIPDVTPDDLQRFAAGLHDIG 75

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
             P S  + L+ ++  F + V  +Y   +P   +E PK         T E++ +  S   
Sbjct: 76  IHPRSQARILSGIKSFFHFLVIADYQEADPSELLEGPKIGFRLPEVLTVEEIDRIISTVD 135

Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-KTGTIITVELPDGFM 242
               EG + R   E L   GLR S+ C   +  L      IK + K G    V +    +
Sbjct: 136 MEKKEGQRNRAILETLYSCGLRVSELCNLKISDLYFEEGFIKVEGKGGKQRLVPISPRAI 195

Query: 243 KLLAMTPIGK----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290
           K +      +          +  F+      ++        K  A KAG+ K  S H  R
Sbjct: 196 KEIKYWFADRNLGKIKKGYEDYVFLARWGNNISRIMVFHMIKELAEKAGITKNISPHTFR 255

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
              AT   + GA    +    G +++   E YT   DR RL
Sbjct: 256 HSFATHLLEGGANLRAIQCMLGHESIATTEIYTH-IDRNRL 295


>gi|194430644|ref|ZP_03063091.1| site-specific recombinase, phage integrase family [Escherichia coli
           B171]
 gi|194411310|gb|EDX27685.1| site-specific recombinase, phage integrase family [Escherichia coli
           B171]
          Length = 341

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 61/330 (18%), Positives = 108/330 (32%), Gaps = 29/330 (8%)

Query: 6   RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
           +LPP V   +        Y  K   R        ES  + A    L     K E   + R
Sbjct: 12  KLPPNVYPNK------YSYVWKPTSR--------ESVTLTAIKDGLAALWKKYEETVNNR 57

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
            +  T   L  ++  SA++  L+  ++  +  +  +++   G      I  +HIR  ++ 
Sbjct: 58  DRAMTFGRLWEKFLASAYYSDLSPRTQKDYLQHQKKLLAVFGKVPADSIKPEHIRRYMDK 117

Query: 126 RKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
           R   + + A    +SM  ++ W   + YV  NPC  V + K K       T ++ Q   S
Sbjct: 118 RGEQSKTQANHEKSSMSRVYSWGYERGYVKGNPCAGVSKFKAKNRERYV-TDKEYQAVLS 176

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
                    +A E       R SD      + + N+   I+  KTG              
Sbjct: 177 VAPL--PVFIAMEIAYLCAARVSDVLSLKWEQIGNDGIFIQQGKTGKKQIKAWSPRLQAA 234

Query: 245 LAMTP--IGKETFFINNDKQKMNATQFSIWFKAKATKAG------VNKSAHGVRKFSATI 296
           +              N    +     F+  +     +AG       + + H + K     
Sbjct: 235 IEKAKQLPTSAYVISNQYGNRYMYKGFNEMWVEARNRAGKISGILTDFTFHDL-KAKGIS 293

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326
             +   ++ +     G KT  Q   Y +  
Sbjct: 294 DYE--GSSRDKQLFSGHKTEGQVLIYDRKV 321


>gi|301299326|ref|ZP_07205611.1| tyrosine recombinase XerD [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300853066|gb|EFK80665.1| tyrosine recombinase XerD [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 290

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 50/269 (18%), Positives = 113/269 (42%), Gaps = 25/269 (9%)

Query: 85  GSLAVNSRISFE---SYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI----QFL 137
             L+ N+  S+      F + +R++    ++++  + I + ++S K+  + A     + +
Sbjct: 11  RGLSENTINSYGIDLKLFLEYLRENEIPSFKQVNKEVIVNYMQSEKNN-NKANSSILRSV 69

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPR 193
           +S+R  F++  +++ +  +P L ++ PK+K    +  TKE++++     +     G + R
Sbjct: 70  SSLRKFFQYLAQEKIIEKDPMLLIDTPKKKQHLPQVLTKEEVEKLLRSPNTGQVLGLRDR 129

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM----- 247
              E +  +GLR S+     ++ L   + +++T  K      V + D  +K +       
Sbjct: 130 AMLELMYATGLRISEIINLKLEDLHLTMGTLQTLGKGHKERIVPVGDEAIKWVNRYLEEA 189

Query: 248 -----TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
                        F+N     +         KA+  KAG+ K  + H +R   AT   + 
Sbjct: 190 RPKLLKQKRSNYLFLNFHGNNLTRQGVWKNLKAEVRKAGIQKNITPHTLRHSFATHILEN 249

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRI 329
           GA    +    G   +   + YT  +++ 
Sbjct: 250 GADLRIVQELLGHADISTTQIYTHLSNKQ 278


>gi|313202049|ref|YP_004040707.1| tyrosine recombinase xerd [Methylovorus sp. MP688]
 gi|312441365|gb|ADQ85471.1| tyrosine recombinase XerD [Methylovorus sp. MP688]
          Length = 298

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 48/268 (17%), Positives = 93/268 (34%), Gaps = 23/268 (8%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK-----HTPSSAIQFLTSM 140
            LA N+  S+                + +         +          P S  + + S+
Sbjct: 21  GLARNTLESYRRDLALFAEWLWSEHAKLLNQADQGDLQQYLAFRFPTSKPRSVSRLIASL 80

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLAF 196
           R  +++ +R+  ++++P L ++ PK      +   ++++    +        G + R   
Sbjct: 81  RRFYRYGLREGQISVDPTLLIDTPKLPRSLPKSLNEDEVVALLNAPDIAQAIGLRDRAML 140

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-VELPDGFMKLLAMTPIGK--- 252
           E L   GLR S+        +  N   ++    G+    V L +  +  L          
Sbjct: 141 ETLYACGLRVSELVGLRYTEVSLNEGVVRVTGKGSKTRLVPLGEESVDWLLRYAREGRPQ 200

Query: 253 -------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGAT 303
                  ++ F+    + M    F    K  A +AG++K  S H +R   AT   + GA 
Sbjct: 201 ILQQRVSDSLFVTQRGEAMTRQAFWYLIKRYALQAGIHKPLSPHVLRHAFATHLLNHGAD 260

Query: 304 AHELMATYGWKTVDQAETYTKGADRIRL 331
              +    G   +   + YT  A R RL
Sbjct: 261 LRVVQMLLGHSDISTTQIYTHVA-RERL 287


>gi|299771869|ref|YP_003733895.1| site-specific tyrosine recombinase [Acinetobacter sp. DR1]
 gi|298701957|gb|ADI92522.1| site-specific tyrosine recombinase [Acinetobacter sp. DR1]
          Length = 306

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 54/292 (18%), Positives = 102/292 (34%), Gaps = 20/292 (6%)

Query: 57  KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT 116
           K+  I SP + P  L +L   +R      +++ ++R ++ S   Q           + T+
Sbjct: 4   KKPRIPSPVQIPEHLSFL-QGFRDYLVAQTVSPHTRNAYLSDLIQCSELHQKTALPQWTS 62

Query: 117 KHIRS---GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
             I      +     +P S  + L+++R  +K+   Q+  + NP  +   PK      + 
Sbjct: 63  DDIADVLIELTKAGKSPRSIARCLSALRQFYKFLREQKLRSDNPVATHHSPKIGRALPKD 122

Query: 174 WTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229
            ++ED++            G + R  FE L   GLR S+     ++ +      ++    
Sbjct: 123 LSEEDVEALIQAPDINTALGLRDRAMFEVLYACGLRVSELLNLRLELINLKQGYLRVTGK 182

Query: 230 G-TIITVELPDGFMKLLAMT---------PIGKETFFINNDKQKMNATQFSIWFKAKATK 279
           G     V L     + +                +  F+      M+   F    K  A +
Sbjct: 183 GNKERLVPLGQFACEWVERYLHNARPQLYKSSTDYLFLTQHGGIMSRQNFWYAIKRYALQ 242

Query: 280 AGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           A +    S H +R   AT   + GA    +    G   +   + YT  A   
Sbjct: 243 ANIQAELSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVR 294


>gi|289435303|ref|YP_003465175.1| integrase/recombinase XerD [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289171547|emb|CBH28093.1| integrase/recombinase XerD [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
          Length = 297

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 48/288 (16%), Positives = 102/288 (35%), Gaps = 33/288 (11%)

Query: 73  WLISEYRKSAHW----GSLAVNSRISFESYFDQIIRKSGDF----DYRKITTKHIRSGVE 124
            LI ++    H+      L+ N+  ++E      +          D   +    I   + 
Sbjct: 3   DLIDDFL---HFLIVEKGLSANTIKAYERDLHYFVSYINTARPLTDPNTLERSDIVGFMA 59

Query: 125 ---SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
                  +  S  +++ S+R  F + +    ++ +P + +E PK+     +    +D++ 
Sbjct: 60  FARKEGKSARSVARYIASLRSFFHYLMHDGKMSHDPMIQIETPKQAQGLPKVLNLDDVEL 119

Query: 182 FK----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE 236
                 +    G + +   E L  +GLR ++  +  +  L   +  I+T  K      + 
Sbjct: 120 LLSSSDTSTPLGLRDQAMMEILYATGLRVTELVQLKMDDLHLQMGFIQTIGKGDKERIIP 179

Query: 237 L-----------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284
           L            +     L       +  F+N+  Q +    F    K  A ++G+ K 
Sbjct: 180 LGKTATTVLEQYLEEARPKLRRPKYRNDFVFLNHHGQGLTRQGFWKILKGIAKESGIEKP 239

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            + H +R   AT   + GA    +    G   +   + YT    ++RL
Sbjct: 240 ITPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTH-VTKLRL 286


>gi|254468110|ref|ZP_05081516.1| tyrosine recombinase XerD [beta proteobacterium KB13]
 gi|207086920|gb|EDZ64203.1| tyrosine recombinase XerD [beta proteobacterium KB13]
          Length = 298

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 53/271 (19%), Positives = 96/271 (35%), Gaps = 20/271 (7%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTSMRVL 143
            L+ N+  S+     Q+     + D   IT   I+  +  R       S  + L  +R  
Sbjct: 24  GLSKNTLDSYRYDLKQLAIWYSNRDIAHITKSEIQEYLAYRFPLSKSRSIARLLACLRRF 83

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFEFL 199
           +++ VR+  +  +P L +E PK      +   + ++++  +       +G + R   E L
Sbjct: 84  YRYLVRENIIHEDPTLMIEAPKPSKALPKSLNENEVEKLLNAPNISDDQGLRDRAMLELL 143

Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLA----------MT 248
              GLR S+     V  +  N   I+ T K      V + +     +           + 
Sbjct: 144 YACGLRVSELITIMVTEVSLNDGVIRITGKGDKTRLVPMGEEASHWIEQYLKSSRDNLLK 203

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHE 306
               +  F+      M    F    K  A  +G+    S H +R   AT   + GA    
Sbjct: 204 EKKSKYLFVTLRGAAMTRQAFWYLIKRYAVASGIKHAISPHVLRHAFATHLLNHGADLRV 263

Query: 307 LMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
           +    G   +   + YT  A R RL   + +
Sbjct: 264 VQMLLGHSDISTTQIYTHVA-RERLKDLHQK 293


>gi|307250820|ref|ZP_07532749.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar
           4 str. M62]
 gi|306857179|gb|EFM89306.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar
           4 str. M62]
          Length = 297

 Score =  149 bits (377), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 44/284 (15%), Positives = 94/284 (33%), Gaps = 24/284 (8%)

Query: 71  LKWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVES 125
           L  +I ++  +      L+ N+  ++    +                    +        
Sbjct: 4   LDPIIEQFLDTLWQEHGLSENTSAAYRLDLESFSEWLPTPKAFLTLDHFDLQAFLGERLE 63

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQ 181
             +  +S+ + L+ +R  F++   + Y   +P L++  P++     +  ++E +      
Sbjct: 64  LGYKATSSARMLSCLRKFFRFLYTENYRQDDPTLTLTSPRKPAHLPKSLSEEQVMDLLDS 123

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240
             +      + +   E L  +GLR S+     + +L      ++   K      V + + 
Sbjct: 124 PNTLDPIELRDKAMLELLYATGLRVSELVSLSIDNLSLRQGVVRVVGKGDKERLVPIGEE 183

Query: 241 FMKLLAMTPIGKETFFINN----------DKQKMNATQFSIWFKAKATKAGVN---KSAH 287
               +           +NN            Q+M    F    K  A  AG++    S H
Sbjct: 184 AGYWIQEFFRYGRAILLNNLQSDVVFPSRRGQQMTRQTFWHRIKHYAVLAGIDSEKLSPH 243

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            +R   AT   + GA    +    G   +   + YT  A + RL
Sbjct: 244 VLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVA-KARL 286


>gi|165976973|ref|YP_001652566.1| site-specific tyrosine recombinase XerD [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|303250986|ref|ZP_07337174.1| site-specific tyrosine recombinase XerD [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307253199|ref|ZP_07535075.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar
           6 str. Femo]
 gi|165877074|gb|ABY70122.1| integrase/recombinase XerD [Actinobacillus pleuropneumoniae serovar
           3 str. JL03]
 gi|302650143|gb|EFL80311.1| site-specific tyrosine recombinase XerD [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306859343|gb|EFM91380.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar
           6 str. Femo]
          Length = 297

 Score =  149 bits (377), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 44/284 (15%), Positives = 95/284 (33%), Gaps = 24/284 (8%)

Query: 71  LKWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVES 125
           L  +I ++  +      L+ N+ +++    +                    +        
Sbjct: 4   LDPIIEQFLDTLWQEHGLSENTSVAYRLDLESFSEWLPTPKAFLTLDHFDLQAFLGERLE 63

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQ 181
             +  +S+ + L+ +R  F++   + Y   +P L++  P++     +  ++E +      
Sbjct: 64  LGYKATSSARMLSCLRKFFRFLYTENYRQDDPTLTLTSPRKPAHLPKSLSEEQVMDLLDS 123

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240
             +      + +   E L  +GLR S+     + +L      ++   K      V + + 
Sbjct: 124 PNTLDPVELRDKAMLELLYATGLRVSELVSLSIDNLSLRQGVVRVVGKGDKERLVPIGEE 183

Query: 241 FMKLLAMTPIGKETFFINN----------DKQKMNATQFSIWFKAKATKAGVN---KSAH 287
               +           +NN            Q+M    F    K  A  AG++    S H
Sbjct: 184 AGYWIQEFFRYGRAILLNNLQSDVVFPSRRGQQMTRQTFWHRIKHYAVLAGIDSEKLSPH 243

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            +R   AT   + GA    +    G   +   + YT  A + RL
Sbjct: 244 VLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVA-KARL 286


>gi|259046879|ref|ZP_05737280.1| integrase/recombinase XerD [Granulicatella adiacens ATCC 49175]
 gi|259036502|gb|EEW37757.1| integrase/recombinase XerD [Granulicatella adiacens ATCC 49175]
          Length = 294

 Score =  149 bits (377), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 39/279 (13%), Positives = 94/279 (33%), Gaps = 24/279 (8%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH------IRSGVESRKH 128
           I  +  S     L+ N+  S+    ++  +   +    ++              ++  ++
Sbjct: 4   IHYFLDSIAVQGLSDNTVSSYRRDLEKFSQFLEEQKVIRLQNVDHTTMVLFLQKLKKDEY 63

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS- 187
             SS  + ++ ++  F++ +++  +  +P   +  PK K +  +  + +++ +       
Sbjct: 64  AVSSTSRMISCLKKFFQFLIQERIIDKDPTQQIHPPKPKKQLPKALSIDEVNRLLEVPDT 123

Query: 188 ---EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVEL------ 237
               G + +   E L  +G+R S+     +  L   +  ++T  K      + +      
Sbjct: 124 TTVLGLRDKAMLELLYATGMRVSELISIELGDLHLELGFLQTIGKGNKQRIIPIGQEATN 183

Query: 238 -----PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290
                 +     L          F+N+         F    K     A + K  S H +R
Sbjct: 184 WIQNYLEYARPALEDEKKLSNVLFLNHRGGPFTRQGFWKNLKKIVQTAMITKEVSPHTLR 243

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              AT   +AGA    +    G   +   + YT   +  
Sbjct: 244 HSFATHILEAGADLRIVQELLGHSDISTTQIYTHITNER 282


>gi|323340732|ref|ZP_08080984.1| integrase/recombinase XerD [Lactobacillus ruminis ATCC 25644]
 gi|323091855|gb|EFZ34475.1| integrase/recombinase XerD [Lactobacillus ruminis ATCC 25644]
          Length = 300

 Score =  149 bits (377), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 52/286 (18%), Positives = 107/286 (37%), Gaps = 25/286 (8%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH------IRSGV 123
           L+ ++++Y         L+ N+  S+     Q I    +     +              +
Sbjct: 6   LQRILNDYLHYLKAERGLSENTVSSYGLDLQQFINYLSEHKITDLNDVDKQVIVDYLDYL 65

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
            ++    +S I+ +TS+R  F+   + E +  +P +S+E PK +       + E+++   
Sbjct: 66  MNKGKANASIIRCVTSLRKFFQSMKQDEKIQDDPMISIETPKGEKHLPEVLSIEEVEMLL 125

Query: 184 SFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELP 238
           +        G + R   E +  +GLR S+     ++ L  ++  I+T   G     V + 
Sbjct: 126 NAPDTSQTLGIRNRAILELMYATGLRVSEVVNLKLEDLHLDVGIIQTMGKGRKERIVPIG 185

Query: 239 DGFMKLL-----AMTP-----IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286
           D  +  +        P           F+N   +++         K +  KAG++K  + 
Sbjct: 186 DEAIVWINNYLNDARPELCKNKRSPFLFVNFHGERLTRQGIWKNLKNEVKKAGISKNVTP 245

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           H +R   AT   + GA    +    G   +   + YT    + RL 
Sbjct: 246 HTLRHSFATHILENGADLRIVQELLGHSDISTTQIYTH-ISKKRLS 290


>gi|262280674|ref|ZP_06058457.1| tyrosine recombinase XerD [Acinetobacter calcoaceticus RUH2202]
 gi|262257574|gb|EEY76309.1| tyrosine recombinase XerD [Acinetobacter calcoaceticus RUH2202]
          Length = 306

 Score =  149 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 53/292 (18%), Positives = 105/292 (35%), Gaps = 20/292 (6%)

Query: 57  KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF---DQIIRKSGDFDYRK 113
           K+  I SP + P  L +L   +R      +++ ++R ++ S      ++ +K+    +  
Sbjct: 4   KKPRIPSPVQIPEHLSFL-QGFRDYLVAQTVSPHTRNAYLSDLIQCSELHKKNALPQWSS 62

Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
                +   +     +P S  + L+++R  +K+   Q+  + NP  +   PK      + 
Sbjct: 63  DDIADVLIELTKAGKSPRSIARCLSTLRQFYKFLREQKLRSDNPVATHHSPKIGRALPKD 122

Query: 174 WTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQK 228
            ++ED++            G + R  FE L   GLR S+     ++ +      ++ T K
Sbjct: 123 LSEEDVESLIQAPDINTALGLRDRAMFEVLYACGLRVSELLNLRLELINLKQGYLRVTGK 182

Query: 229 TGTIITVELPDGFMKLLAMT---------PIGKETFFINNDKQKMNATQFSIWFKAKATK 279
                 V L     + +                +  F+      M+   F    K  A +
Sbjct: 183 GNKERLVPLGQFACEWVERYLNNARPQLYKSSTDYLFLTQHGGIMSRQNFWYAIKRYALQ 242

Query: 280 AGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           A +    S H +R   AT   + GA    +    G   +   + YT  A   
Sbjct: 243 ANIQAELSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVR 294


>gi|313204480|ref|YP_004043137.1| tyrosine recombinase xerd subunit [Paludibacter propionicigenes
           WB4]
 gi|312443796|gb|ADQ80152.1| tyrosine recombinase XerD subunit [Paludibacter propionicigenes
           WB4]
          Length = 302

 Score =  149 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 46/262 (17%), Positives = 91/262 (34%), Gaps = 22/262 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVESRKHTPSSAIQFLTS 139
            +L+ N+  ++E    ++     +   +         +     + S    P S  + L+S
Sbjct: 16  KALSANTIDAYERDLQKLTVYLSEAHVKPEEATTEILRDFIIEISSLGIHPRSQARILSS 75

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ----QFKSFWSEGSQPRLA 195
           ++  + + + ++ +  +P   +E PK         +  ++            EG + +  
Sbjct: 76  IKSFYHFLIYKDVIDNDPTELLESPKTGLRLPEVLSLNEIDDIVSAIDLSKPEGQRNKAI 135

Query: 196 FEFLLYSGLRCSDSCRAGVQ-HLQNNIFSIKTQKTGTIITVELPDGFMK----------L 244
            E L  SGLR S+     +     +  + +   K      V +    MK          L
Sbjct: 136 IEVLYGSGLRVSELIGLQLSKMYMDEGYMLVEGKGSKQRLVPMSPQAMKQIELWKTDRNL 195

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302
           L +    ++  F+N    K+         K  A  AG+ K  S H  R   AT   + GA
Sbjct: 196 LDIKKGNEDCLFLNRRGSKLTRDMIFKIVKELALLAGIRKNVSPHTFRHSFATHLLENGA 255

Query: 303 TAHELMATYGWKTVDQAETYTK 324
               +    G +++   E YT 
Sbjct: 256 NLRAIQQLLGHESITTTEIYTH 277


>gi|295399051|ref|ZP_06809033.1| tyrosine recombinase XerD [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|294978517|gb|EFG54113.1| tyrosine recombinase XerD [Geobacillus thermoglucosidasius
           C56-YS93]
          Length = 299

 Score =  149 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 41/266 (15%), Positives = 97/266 (36%), Gaps = 26/266 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDF-------DYRKITTKHIRSGVESRKHTPSSAIQFL 137
            +LA N+ +S+E    +               D  ++        ++ +  +P +  + +
Sbjct: 17  RNLAKNTIVSYERDLKKYAHYLRHVEQIQSWNDVSRLHIMQFLKFLKEKGSSPKTIARHI 76

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KSFWSEGSQPR 193
            S+R   ++ +R++    +P + +E P+ +    +  + E+++      K+    G + +
Sbjct: 77  ASIRSFHQFLLREKIADQDPSVHIESPQMERTLPKVLSLEEVEALLEAPKTNTPIGIRDK 136

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-------------ELPDG 240
              E L  +G+R S+     +  +   +  ++    G    +              L   
Sbjct: 137 AMIELLYATGMRVSELVNLNLSDVHLTMGFVRCYGKGNKERIVPVGSMALDALKAYLETA 196

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISA 298
             KL+       +  F+N+   ++    F    K  A +A + K  + H +R   AT   
Sbjct: 197 RPKLINPKKRTTDALFLNHYGDRLTRQGFWKILKKLAKEANIEKELTPHTLRHSFATHLL 256

Query: 299 DAGATAHELMATYGWKTVDQAETYTK 324
           + GA    +    G   +   + YT 
Sbjct: 257 ENGADLRAVQELLGHADISTTQIYTH 282


>gi|294139500|ref|YP_003555478.1| integrase/recombinase XerD [Shewanella violacea DSS12]
 gi|293325969|dbj|BAJ00700.1| integrase/recombinase XerD [Shewanella violacea DSS12]
          Length = 305

 Score =  149 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 53/276 (19%), Positives = 108/276 (39%), Gaps = 25/276 (9%)

Query: 85  GSLAVNSRISFE---SYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT---PSSAIQFLT 138
             L+ N+  ++     +FD+ I++ G  +  +++ + IR  ++ R       +S+ + ++
Sbjct: 27  RGLSDNTLAAYRTDLRHFDRYIQELG-AELVQVSQELIRGYLDVRFDKGFARTSSARMMS 85

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194
           S+R  F + + ++ +  +P   ++ PK   +     ++ D+    +          + R 
Sbjct: 86  SLRRFFGFLLLKKMITADPIARIKSPKLARKLPDSLSEADVDILLNEPDIQDPIECRDRA 145

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG--------FMKLL 245
             E L  +GLR ++     ++ L      ++   K G    V L +              
Sbjct: 146 MLELLYATGLRVTELVSLTMEQLSLRQGLVRVVGKGGKERLVPLGELAVSEVENYLQGAR 205

Query: 246 AMTPIGK--ETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAG 301
           A    GK  +  F +   Q M    F    K  A +AG+  + S H +R   AT   + G
Sbjct: 206 AELLKGKLSDVLFPSKRGQMMARQTFWYRIKLYALRAGIVTHISPHTLRHAFATHLLNHG 265

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
           A    +    G   +   + YT  A + RL   +S 
Sbjct: 266 ADLRVVQLLLGHSDLSTTQIYTHVA-KARLSQLHSE 300


>gi|315282996|ref|ZP_07871279.1| tyrosine recombinase XerD [Listeria marthii FSL S4-120]
 gi|313613367|gb|EFR87228.1| tyrosine recombinase XerD [Listeria marthii FSL S4-120]
          Length = 297

 Score =  149 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 48/288 (16%), Positives = 104/288 (36%), Gaps = 33/288 (11%)

Query: 73  WLISEYRKSAHW----GSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVE 124
            LI ++    H+      L+ N+  +++      +          D   +    I   + 
Sbjct: 3   DLIEDFL---HFLIVERGLSANTIKAYQRDLHYFVSYMETSKNLTDPNILERSDIVGFMA 59

Query: 125 ---SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
                  +  S  +++ S+R  F + +    ++ +P + +E PK+     +    +D+++
Sbjct: 60  FARQEGKSARSVARYIASLRSFFHYLMHDGKMSHDPMIQIETPKQAQSLPKVLNLDDVEK 119

Query: 182 FK----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE 236
                 +    G + +   E L  +GLR ++  R  +  L  ++  I+T  K      + 
Sbjct: 120 LLSSSDTSTPLGLRDQAMMEILYATGLRVTELVRLKMDDLHLHMGFIQTIGKGDKERIIP 179

Query: 237 L-----------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284
           L            +     L       +  F+N+  Q +    F    K  A ++G+ K 
Sbjct: 180 LGKTATTVLEQYLEEARPKLRRPKYRNDFVFLNHHGQGLTRQGFWKILKGIAKESGIEKP 239

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            + H +R   AT   + GA    +    G   +   + YT    ++RL
Sbjct: 240 ITPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTH-VTKLRL 286


>gi|295677507|ref|YP_003606031.1| tyrosine recombinase XerD [Burkholderia sp. CCGE1002]
 gi|295437350|gb|ADG16520.1| tyrosine recombinase XerD [Burkholderia sp. CCGE1002]
          Length = 316

 Score =  149 bits (376), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 51/284 (17%), Positives = 89/284 (31%), Gaps = 25/284 (8%)

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG----VE 124
            ++               L+ N+  ++                  + T            
Sbjct: 26  ASIDAFCDALWLE---HGLSRNTLDAYRRDLRLFCEWLAHTRNASLDTASEADLSAYSAA 82

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
            +K   +SA + L+  R  + WAVR+   A +P L +   K+        ++  ++    
Sbjct: 83  RQKDKATSANRRLSVFRRYYAWAVREHRAAADPTLRLRSAKQPPRFPSTLSEAQVEALLG 142

Query: 185 F----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPD 239
                   G + R   E +  SGLR ++        +  N   ++ T K      V   +
Sbjct: 143 APDIDTPLGLRDRTMLELMYASGLRVTELVTLKTVEVGLNEGVVRVTGKGSKERLVPFGE 202

Query: 240 GFMKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287
                +             P   +  F+    + M   QF    K  A  AGV+   S H
Sbjct: 203 EAHAWIERYLREARPALLGPRAADALFVTARAEGMTRQQFWNIIKRHAQAAGVHAPLSPH 262

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            +R   AT   + GA    +    G   +   + YT  A R RL
Sbjct: 263 TLRHAFATHLLNHGADLRVVQLLLGHTDISTTQIYTHVA-RERL 305


>gi|257887731|ref|ZP_05667384.1| phage integrase [Enterococcus faecium 1,141,733]
 gi|257896226|ref|ZP_05675879.1| phage integrase [Enterococcus faecium Com12]
 gi|293379533|ref|ZP_06625675.1| tyrosine recombinase XerD [Enterococcus faecium PC4.1]
 gi|257823785|gb|EEV50717.1| phage integrase [Enterococcus faecium 1,141,733]
 gi|257832791|gb|EEV59212.1| phage integrase [Enterococcus faecium Com12]
 gi|292641842|gb|EFF60010.1| tyrosine recombinase XerD [Enterococcus faecium PC4.1]
          Length = 295

 Score =  149 bits (376), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 45/275 (16%), Positives = 103/275 (37%), Gaps = 26/275 (9%)

Query: 75  ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRK-------ITTKHIRSGVESR 126
           I++Y    +    L+ N+R S+E   +Q +    +            +  + +    E +
Sbjct: 5   INDYLHYLNIERGLSANTRQSYERDLEQYLHFLEEQKVASWQDVDRFLVIRFLEKLHEEK 64

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
           K T ++  + ++S+R   ++  ++     +P   ++ PK+  +     T  ++++     
Sbjct: 65  KAT-ATVTRMISSLRRFHQFLRQERVTDHDPMQHIDTPKKAQKLPSTLTLAEVEKLIEAP 123

Query: 187 S----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241
                 G + R   E +  +G+R S+     +  L  ++  ++T  K      + L D  
Sbjct: 124 DTTKTLGIRDRAILEVMYATGMRVSELIGLKLGDLHLSLGLVQTVGKGDKERIIPLGDYA 183

Query: 242 MKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289
           ++ L                +   F+NN  + ++        K    +AG+ K  + H +
Sbjct: 184 IQWLERYLDEARPLLVKDASEMHVFVNNHGKGLSRQGIWKNLKQLVREAGIYKEVTPHTL 243

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           R   AT   + GA    +    G   +   + YT 
Sbjct: 244 RHSFATHLLENGADLRTVQELLGHADISTTQIYTH 278


>gi|88860260|ref|ZP_01134898.1| site-specific tyrosine recombinase XerD [Pseudoalteromonas tunicata
           D2]
 gi|88817458|gb|EAR27275.1| site-specific tyrosine recombinase XerD [Pseudoalteromonas tunicata
           D2]
          Length = 301

 Score =  149 bits (376), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 37/264 (14%), Positives = 91/264 (34%), Gaps = 19/264 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFLTSMR 141
             ++ N+  ++ +   +           ++  + ++  +  R      P S  + +++++
Sbjct: 26  QGVSENTLAAYRTDLTKFAEFILPKGLIEVEQQDVQYYLAHRLDNGFKPRSTARTVSALK 85

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFE 197
             +++ +R++ ++ NP   + +PK      +  ++E++ +           G + +   E
Sbjct: 86  RFYQYYLREKQLSTNPMTHIGQPKAGQSLPKTLSEEEVGRLLDAPDLEEPIGLRDKAMLE 145

Query: 198 FLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAM--------- 247
            L  +GLR S+     ++ +           K      V + +  +  +           
Sbjct: 146 LLYATGLRVSELVGLRIEQINLRQAVVFVKGKGNKERLVPMGEEALDCIERFIKEGRPQL 205

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAH 305
                +  F +     M    F    K  A  AG+    S H +R   AT   + GA   
Sbjct: 206 IKHATDFVFPSKRGIGMTRQTFWHRIKHYALVAGIESELSPHTLRHAFATHLINHGADLR 265

Query: 306 ELMATYGWKTVDQAETYTKGADRI 329
            +    G   +   + YT  A   
Sbjct: 266 VVQMMLGHSDLSTTQIYTHVAKER 289


>gi|227551150|ref|ZP_03981199.1| site-specific DNA tyrosine recombinase [Enterococcus faecium
           TX1330]
 gi|227179712|gb|EEI60684.1| site-specific DNA tyrosine recombinase [Enterococcus faecium
           TX1330]
          Length = 300

 Score =  149 bits (376), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 45/275 (16%), Positives = 103/275 (37%), Gaps = 26/275 (9%)

Query: 75  ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRK-------ITTKHIRSGVESR 126
           I++Y    +    L+ N+R S+E   +Q +    +            +  + +    E +
Sbjct: 10  INDYLHYLNIERGLSANTRQSYERDLEQYLHFLEEQKVASWQDVDRFLVIRFLEKLHEEK 69

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
           K T ++  + ++S+R   ++  ++     +P   ++ PK+  +     T  ++++     
Sbjct: 70  KAT-ATVTRMISSLRRFHQFLRQERVTDHDPMQHIDTPKKAQKLPSTLTLAEVEKLIEAP 128

Query: 187 S----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241
                 G + R   E +  +G+R S+     +  L  ++  ++T  K      + L D  
Sbjct: 129 DTTKTLGIRDRAILEVMYATGMRVSELIGLKLGDLHLSLGLVQTVGKGDKERIIPLGDYA 188

Query: 242 MKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289
           ++ L                +   F+NN  + ++        K    +AG+ K  + H +
Sbjct: 189 IQWLERYLDEARPLLVKDASEMHVFVNNHGKGLSRQGIWKNLKQLVREAGIYKEVTPHTL 248

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           R   AT   + GA    +    G   +   + YT 
Sbjct: 249 RHSFATHLLENGADLRTVQELLGHADISTTQIYTH 283


>gi|313672931|ref|YP_004051042.1| integrase family protein [Calditerrivibrio nitroreducens DSM 19672]
 gi|312939687|gb|ADR18879.1| integrase family protein [Calditerrivibrio nitroreducens DSM 19672]
          Length = 297

 Score =  149 bits (376), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 43/274 (15%), Positives = 98/274 (35%), Gaps = 18/274 (6%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132
           L+  ++    +  SL+ NS  +++    ++ R + D++          S +  +  +  S
Sbjct: 7   LVKRFQHYMKYDLSLSENSIEAYKRDLMELTRFTKDYNLTPSDLVSYMSHLRKKGLSIES 66

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KSFWSE 188
            ++ L+ +   + + ++++    NP  S+ +PK+  +  +    E+++            
Sbjct: 67  ILRNLSGISAFYDFLIQEKIFDKNPVASISKPKKWEKLPKFLNFEEVEALINAPDKSTPT 126

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-----IITVELPDGFMK 243
           G +  +  +    +G+R S+  +     +      +     G+      I   L D   +
Sbjct: 127 GYRDNIILKTFYSTGMRVSELVKCKTSDIDFKRGIVSVVGKGSKQRFLPIYQSLQDELKQ 186

Query: 244 LLAMTPI------GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSAT 295
            + +              F+N +   +      +  K    KAG+ K  S H +R   AT
Sbjct: 187 YIEVRHRYFIKEKDNGFLFLNKNSAPLTRVYCWMLIKKYCKKAGIKKDISPHTLRHSFAT 246

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
                GA    +    G   +   E YT   D  
Sbjct: 247 HLLTNGADLRTIQLLLGHSDIATTEIYTHITDNK 280


>gi|326692503|ref|ZP_08229508.1| tyrosine recombinase XerD [Leuconostoc argentinum KCTC 3773]
          Length = 298

 Score =  149 bits (376), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 47/287 (16%), Positives = 95/287 (33%), Gaps = 24/287 (8%)

Query: 70  TLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVESR 126
           T+   I++Y         L+ N+  S+     Q      +       +    + + +   
Sbjct: 4   TINLAIADYLHYIRIERGLSDNTINSYRQDLTQFGAYLTAEKLTLEAVDHVVVLAWLNQL 63

Query: 127 KHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
           +    S     + +TS+R  F +  +++ V  NP   ++ PK+ T      +  ++    
Sbjct: 64  RLVGKSNNSVIRMVTSLRKFFGYLAQEKIVLPNPMRDIQPPKKATHLPAVLSVAEIDALL 123

Query: 184 SF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELP 238
           +          + R   E +  +GLR S+     +  L   +  I+T  K      + + 
Sbjct: 124 AVPTDTTPLDIRNRTLIEVMYATGLRVSELVNLKLSDLHLQLGLIQTIGKGDKERIIPIG 183

Query: 239 DGFMKLLAMTPI----------GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286
           +     L                    F+N+   ++         K    +AG+ K  S 
Sbjct: 184 EVAADWLTRYFASSRLALLKGKASPYVFLNDRGGQLTRQGVWKIIKKLVVEAGITKDVSP 243

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           H +R   AT   + GA    +    G   +   + YT    + RL  
Sbjct: 244 HTLRHSFATHILENGADLRIVQELLGHADISTTQIYTH-ISKKRLSE 289


>gi|259500665|ref|ZP_05743567.1| integrase/recombinase XerD [Lactobacillus iners DSM 13335]
 gi|259168049|gb|EEW52544.1| integrase/recombinase XerD [Lactobacillus iners DSM 13335]
          Length = 297

 Score =  149 bits (376), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 46/274 (16%), Positives = 100/274 (36%), Gaps = 25/274 (9%)

Query: 75  ISEYRKSAH-WGSLAVNSRISFESYFDQ---IIRKSG--DFDYRKITTKHIRSGVESRKH 128
           + +Y + A     L+ N+ +S+     +    ++  G   ++   +      +    +  
Sbjct: 6   LEDYLRFAQIERGLSNNTLLSYRQDLLEYFSFLKSLGITTWEVDALIIDSFFAQERDKGK 65

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF--- 185
             +S  + L+S+R  ++W  RQ  +  +P L ++ PK++       +  ++ +  +    
Sbjct: 66  AIASISRMLSSLRKFYQWLFRQNLIKQDPLLRIDSPKKEKRLPTAMSTTEVTKLINMPDT 125

Query: 186 -WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMK 243
               G + R   E L  +G+R S+        +   +  IK   K      + + +  M 
Sbjct: 126 TTDLGIRDRAILETLYATGMRVSEVINLNEDSIHEELHLIKVFGKGSKQRLIPISNVAMS 185

Query: 244 LLAMTPIG------------KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289
            +    I             ++  F+N+   K+         K     AG+NK  + H +
Sbjct: 186 WIKKYQITVRNKTLLESGKFEKAIFLNSRGGKITRQAVWQMIKRYCQLAGINKNVTPHTL 245

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           R   AT   + GA    +    G   +   + YT
Sbjct: 246 RHTFATHLLENGADLRIVQEILGHSDISTTQIYT 279


>gi|300767490|ref|ZP_07077402.1| tyrosine recombinase XerD [Lactobacillus plantarum subsp. plantarum
           ATCC 14917]
 gi|300495309|gb|EFK30465.1| tyrosine recombinase XerD [Lactobacillus plantarum subsp. plantarum
           ATCC 14917]
          Length = 305

 Score =  149 bits (376), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 45/273 (16%), Positives = 93/273 (34%), Gaps = 25/273 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH------IRSGVESRKHTPSSAIQFLT 138
             L  N+  S+                                 ++    + ++ I  ++
Sbjct: 25  RGLVENTIKSYSQDLTTFSEYLMSQQITDYRVVDRYVLLNYLQYLDEAGKSRNTIIHSVS 84

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194
           S+R  F++  +   +  +P L ++ PKR     +  +  ++++  +        G + R 
Sbjct: 85  SLRKFFQYLAQMHAIDTDPMLKIDTPKRAQHLPQVLSPREVERLLAVPKLNTPLGLRDRT 144

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM------ 247
             E +  +GLR S++    +  L  ++  I+T  K      + + D  +  +        
Sbjct: 145 LLEVMYATGLRVSETINLTMDDLHLDLGLIQTIGKGDKERIIPIGDVAIDFITRYLKTAR 204

Query: 248 -----TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
                        FINN   K++        KA+   AG+ K  + H +R   AT   + 
Sbjct: 205 PKLVSAKRRNSYLFINNHGGKLSRQGVWKNLKAEVKAAGIEKNVTPHTLRHSFATHILEN 264

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           GA    +    G   +   + YT    + RL  
Sbjct: 265 GADLRVVQELLGHADISTTQIYTH-ISKKRLAE 296


>gi|261211515|ref|ZP_05925803.1| site-specific recombinase XerD [Vibrio sp. RC341]
 gi|260839470|gb|EEX66096.1| site-specific recombinase XerD [Vibrio sp. RC341]
          Length = 302

 Score =  149 bits (376), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 47/278 (16%), Positives = 105/278 (37%), Gaps = 26/278 (9%)

Query: 74  LISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVESR 126
           L+ ++  +  W    LA N+  S+ +   +++       YR         +  +S +  +
Sbjct: 11  LVEQFLDTM-WLERGLAENTVASYRNDLSKLLEWMEQHHYRLDFISFSGLQEYQSWLSEQ 69

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185
            + PSS  + L+++R LF++  R++  A +P   +  PK      +  ++  +    +  
Sbjct: 70  NYKPSSKARMLSAIRRLFQYLHREKVRADDPSALLISPKLPIRLPKDLSEAQVDALLNAP 129

Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241
                   + +   E L  +GLR ++     ++++      ++   K G    V + +  
Sbjct: 130 DPQTPIELRDKAMLELLYATGLRVTELVSLTMENMSLRQGVVRVIGKGGKERLVPMGENA 189

Query: 242 MKLLAMTPIGKETFFI----------NNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288
           ++ +        +  +          ++  Q+M    F    K  A  AG++    S H 
Sbjct: 190 IEWIETFLQQGRSLLLGEQTSDIVFPSSRGQQMTRQTFWHRIKHYAVIAGIDVEKLSPHV 249

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           +R   AT   + GA    +    G   +   + YT  A
Sbjct: 250 LRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVA 287


>gi|260551079|ref|ZP_05825283.1| tyrosine recombinase XerD [Acinetobacter sp. RUH2624]
 gi|260405846|gb|EEW99334.1| tyrosine recombinase XerD [Acinetobacter sp. RUH2624]
          Length = 306

 Score =  149 bits (376), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 53/294 (18%), Positives = 104/294 (35%), Gaps = 20/294 (6%)

Query: 55  TPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD---QIIRKSGDFDY 111
             K+  I SP + P  L +L   +R      +++ ++R ++ S      ++ +K+    +
Sbjct: 2   INKKPRIPSPVQIPEHLSFL-QGFRDYLVAQTVSPHTRNAYLSDLIQCAELHKKNSLPKW 60

Query: 112 RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
                  +   +     +P S  + L+++R  +K+   Q+  + NP  +   PK      
Sbjct: 61  SSDDISDVLIELTKIGKSPRSIARCLSALRQFYKFLREQKLRSDNPVATHHSPKIGRALP 120

Query: 172 RPWTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-T 226
           +  ++ED++            G + R  FE L   GLR S+     ++ +      ++ T
Sbjct: 121 KDLSEEDVEALIQAPDITTALGLRDRAMFEVLYACGLRVSELINLRLELINLKQGYLRIT 180

Query: 227 QKTGTIITVELPDGFMKLLAMT---------PIGKETFFINNDKQKMNATQFSIWFKAKA 277
            K      V L       +                +  F+      M+   F    K  A
Sbjct: 181 GKGNKERLVPLGQYACDWVERYLNDARPQLYKTSTDYLFLTQHGGIMSRQNFWYAIKRYA 240

Query: 278 TKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            +A +    S H +R   AT   + GA    +    G   +   + YT  A   
Sbjct: 241 LQANIQAELSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVR 294


>gi|209521010|ref|ZP_03269744.1| tyrosine recombinase XerD [Burkholderia sp. H160]
 gi|209498544|gb|EDZ98665.1| tyrosine recombinase XerD [Burkholderia sp. H160]
          Length = 318

 Score =  149 bits (376), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 49/286 (17%), Positives = 89/286 (31%), Gaps = 25/286 (8%)

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE-- 124
              ++               L+ N+  ++                  + T          
Sbjct: 26  SSASIDAFCDALWLE---HGLSRNTLDAYRRDLRLFCEWLAHTRNASLDTASEADLTAYS 82

Query: 125 --SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
              ++   +SA + L+  R  + WAVR+   A +P L +   K+        ++  ++  
Sbjct: 83  AARQQDKATSANRRLSVFRRYYAWAVREHRAAADPTLRIRSAKQPPRFPSTLSEAQVEAL 142

Query: 183 KSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVEL 237
                     G + R   E +  SGLR ++        +  N   ++ T K      +  
Sbjct: 143 LGAPDIDTPLGLRDRTMLELMYASGLRVTELVTLKTVEVGLNEGVVRVTGKGSKERLIPF 202

Query: 238 PDGFMKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--S 285
            +     +             P   +  F+    + M   QF    K  A  AGV+   S
Sbjct: 203 GEEAHAWIERYLREARPALLGPRAADALFVTARAEGMTRQQFWNIIKRHAQVAGVHAPLS 262

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            H +R   AT   + GA    +    G   +   + YT  A R RL
Sbjct: 263 PHTLRHAFATHLLNHGADLRVVQLLLGHTDISTTQIYTHVA-RERL 307


>gi|302191354|ref|ZP_07267608.1| tyrosine recombinase XerD [Lactobacillus iners AB-1]
 gi|312871387|ref|ZP_07731482.1| tyrosine recombinase XerD [Lactobacillus iners LEAF 3008A-a]
 gi|311093040|gb|EFQ51389.1| tyrosine recombinase XerD [Lactobacillus iners LEAF 3008A-a]
          Length = 296

 Score =  149 bits (376), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 46/274 (16%), Positives = 100/274 (36%), Gaps = 25/274 (9%)

Query: 75  ISEYRKSAH-WGSLAVNSRISFESYFDQ---IIRKSG--DFDYRKITTKHIRSGVESRKH 128
           + +Y + A     L+ N+ +S+     +    ++  G   ++   +      +    +  
Sbjct: 5   LEDYLRFAQIERGLSNNTLLSYRQDLLEYFSFLKSLGITTWEVDALIIDSFFAQERDKGK 64

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF--- 185
             +S  + L+S+R  ++W  RQ  +  +P L ++ PK++       +  ++ +  +    
Sbjct: 65  AIASISRMLSSLRKFYQWLFRQNLIKQDPLLRIDSPKKEKRLPTAMSTTEVTKLINMPDT 124

Query: 186 -WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMK 243
               G + R   E L  +G+R S+        +   +  IK   K      + + +  M 
Sbjct: 125 TTDLGIRDRAILETLYATGMRVSEVINLNEDSIHEELHLIKVFGKGSKQRLIPISNVAMS 184

Query: 244 LLAMTPIG------------KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289
            +    I             ++  F+N+   K+         K     AG+NK  + H +
Sbjct: 185 WIKKYQITVRNKTLLESGKFEKAIFLNSRGGKITRQAVWQMIKRYCQLAGINKNVTPHTL 244

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           R   AT   + GA    +    G   +   + YT
Sbjct: 245 RHTFATHLLENGADLRIVQEILGHSDISTTQIYT 278


>gi|315122595|ref|YP_004063084.1| phage-related integrase/recombinase [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495997|gb|ADR52596.1| phage-related integrase/recombinase [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 151

 Score =  149 bits (376), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 76/144 (52%), Positives = 105/144 (72%), Gaps = 1/144 (0%)

Query: 1   MTPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60
           M+ + +LP FV +E+TRHGKIIYYFRKG   R RLP P + +F+PAY+SAL+G   ++  
Sbjct: 1   MSRNTKLP-FVVREKTRHGKIIYYFRKGKDDRTRLPIPSDPSFMPAYLSALSGIPIEQSS 59

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
           I    K+P T++WLI +YRKS HW SLA+ +R   +  F  II+ SGDF+Y+KIT KHIR
Sbjct: 60  IKPVIKEPQTMRWLIEQYRKSGHWASLALKTRKRIDQDFSNIIKNSGDFEYKKITAKHIR 119

Query: 121 SGVESRKHTPSSAIQFLTSMRVLF 144
            G+E RK TP+SA+ FL+S+R+ +
Sbjct: 120 LGLEHRKSTPASAVLFLSSIRLSY 143


>gi|28378545|ref|NP_785437.1| integrase/recombinase [Lactobacillus plantarum WCFS1]
 gi|254556759|ref|YP_003063176.1| integrase/recombinase [Lactobacillus plantarum JDM1]
 gi|308180702|ref|YP_003924830.1| integrase/recombinase [Lactobacillus plantarum subsp. plantarum
           ST-III]
 gi|28271381|emb|CAD64286.1| integrase/recombinase [Lactobacillus plantarum WCFS1]
 gi|254045686|gb|ACT62479.1| integrase/recombinase [Lactobacillus plantarum JDM1]
 gi|308046193|gb|ADN98736.1| integrase/recombinase [Lactobacillus plantarum subsp. plantarum
           ST-III]
          Length = 296

 Score =  149 bits (376), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 45/273 (16%), Positives = 93/273 (34%), Gaps = 25/273 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH------IRSGVESRKHTPSSAIQFLT 138
             L  N+  S+                                 ++    + ++ I  ++
Sbjct: 16  RGLVENTIKSYSQDLTTFSEYLMSQQITDYRVVDRYVLLNYLQYLDEAGKSRNTIIHSVS 75

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194
           S+R  F++  +   +  +P L ++ PKR     +  +  ++++  +        G + R 
Sbjct: 76  SLRKFFQYLAQMHAIDTDPMLKIDTPKRAQHLPQVLSPREVERLLAVPKLNTPLGLRDRT 135

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM------ 247
             E +  +GLR S++    +  L  ++  I+T  K      + + D  +  +        
Sbjct: 136 LLEVMYATGLRVSETINLTMDDLHLDLGLIQTIGKGDKERIIPIGDVAIDFITRYLKTAR 195

Query: 248 -----TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
                        FINN   K++        KA+   AG+ K  + H +R   AT   + 
Sbjct: 196 PKLVSAKRRNSYLFINNHGGKLSRQGVWKNLKAEVKAAGIEKNVTPHTLRHSFATHILEN 255

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           GA    +    G   +   + YT    + RL  
Sbjct: 256 GADLRVVQELLGHADISTTQIYTH-ISKKRLAE 287


>gi|193076109|gb|ABO10716.2| site-specific tyrosine recombinase [Acinetobacter baumannii ATCC
           17978]
          Length = 306

 Score =  149 bits (376), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 54/294 (18%), Positives = 105/294 (35%), Gaps = 20/294 (6%)

Query: 55  TPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF---DQIIRKSGDFDY 111
             K+  I SP + P  L +L   +R      +++ ++R ++ S      ++ +K+   D+
Sbjct: 2   INKKPRIPSPVQIPEHLSFL-QGFRDYLVAQTVSPHTRNAYLSDLIQCSELHKKNRLPDW 60

Query: 112 RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
                  +   +     +P S  + L+++R  +K+   Q+  + NP  +   PK      
Sbjct: 61  TSDDISDVLIELTKVGKSPRSIARCLSALRQFYKFLREQKLRSDNPVATHHSPKIGRALP 120

Query: 172 RPWTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-T 226
           +  ++ED++            G + R  FE L   GLR S+     ++ +      ++ T
Sbjct: 121 KDLSEEDVEALIQAPDITTALGLRDRAMFEVLYACGLRVSELLNLRLELINLKQGYLRIT 180

Query: 227 QKTGTIITVELPDGFMKLLAMT---------PIGKETFFINNDKQKMNATQFSIWFKAKA 277
            K      V L       +                +  F+      M+   F    K  A
Sbjct: 181 GKGNKERLVPLGQYACDWVERYLNEARPQLYKSSTDYLFLTQHGGIMSRQNFWYAIKHYA 240

Query: 278 TKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            +A +    S H +R   AT   + GA    +    G   +   + YT  A   
Sbjct: 241 LQANIQAELSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVR 294


>gi|331673529|ref|ZP_08374292.1| putative integrase for prophage [Escherichia coli TA280]
 gi|331068802|gb|EGI40194.1| putative integrase for prophage [Escherichia coli TA280]
          Length = 341

 Score =  149 bits (376), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 62/330 (18%), Positives = 109/330 (33%), Gaps = 29/330 (8%)

Query: 6   RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
           +LPP V   +        Y  K   R        ES  + A    L     K E   + R
Sbjct: 12  KLPPNVYPNK------YSYVWKPTSR--------ESVTLTAIKDGLAALWKKYEETVNNR 57

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
            +  T   L  ++  SA++  L+  ++  +  +  +++   G      I  +HIR  ++ 
Sbjct: 58  DRAMTFGRLWEKFLASAYYSDLSPRTQKDYLQHQKKLLAVFGKVPADSIKPEHIRRYMDK 117

Query: 126 RKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
           R   + + A    +SM  ++ W   + YV  NPC  V + K K       T ++ Q   S
Sbjct: 118 RGEQSKTQANHEKSSMSRVYSWGYERGYVKANPCAGVSKFKAKNRERYV-TDKEYQAVLS 176

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
             S      +A E       R SD      + + N+   I+  KTG             +
Sbjct: 177 VASP--PVFIAMEIAYLCAARISDVLSLKWEQIGNDGIFIQQGKTGKKQIKAWSPRLQSV 234

Query: 245 LAMTP--IGKETFFINNDKQKMNATQFSIWFKAKATKAG------VNKSAHGVRKFSATI 296
           +              N    +     F+  +      AG       + + H + K     
Sbjct: 235 IEKAKQLPKSAYVISNQYGNRYMYKGFNEMWVETRNLAGQISGIATDFTFHDL-KAKGIS 293

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326
             +   ++ +     G KT  Q   Y +  
Sbjct: 294 DYE--GSSRDKQLFSGHKTEGQVLIYDRKV 321


>gi|323186667|gb|EFZ71993.1| phage integrase family protein [Escherichia coli RN587/1]
          Length = 300

 Score =  149 bits (376), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 47/266 (17%), Positives = 88/266 (33%), Gaps = 15/266 (5%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH- 128
           T   L  ++  SA++  L+  ++  +  +  +++   G      I   HIR  ++ R   
Sbjct: 2   TFGRLWEKFLASAYYSDLSPRTQKDYLQHQKKLLAVFGKVPADSIKPVHIRRYMDKRGEQ 61

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           + + A    +SM  ++ W   + YV  NPC  V + K K       T ++ Q   S    
Sbjct: 62  SKTQANHEKSSMSRVYSWGYERGYVKGNPCAGVSKFKAKNRERYV-TDKEYQAVLSVAPL 120

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248
                +A E       R SD      + + N+   I+  KTG              +   
Sbjct: 121 --PVFIAMEIAYLCAARVSDVLSLKWEQIGNDGIFIQQGKTGKKQIKAWSPRLQAAIEKA 178

Query: 249 P--IGKETFFINNDKQKMNATQFSIWFKAKATKAG------VNKSAHGVRKFSATISADA 300
                      N    +     F+  +     +AG       + + H + K       + 
Sbjct: 179 KQLPTSAYVISNQYGNRYMYKGFNEMWVEARNRAGKISGILTDFTFHDL-KAKGISDYE- 236

Query: 301 GATAHELMATYGWKTVDQAETYTKGA 326
             ++ +     G KT  Q   Y +  
Sbjct: 237 -GSSRDKQLFSGHKTEGQVLIYDRKV 261


>gi|237749023|ref|ZP_04579503.1| tyrosine recombinase XerD [Oxalobacter formigenes OXCC13]
 gi|229380385|gb|EEO30476.1| tyrosine recombinase XerD [Oxalobacter formigenes OXCC13]
          Length = 312

 Score =  149 bits (375), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 49/274 (17%), Positives = 97/274 (35%), Gaps = 23/274 (8%)

Query: 86  SLAVNSRISFESYF----DQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTS 139
            L+ N+  ++          + +   D D  K+   H+     +R  +   +SA + LT 
Sbjct: 29  GLSKNTLDAYRRDLLLFARWLEKNCPDIDLLKVDQNHLNDYFWARHAESKATSANRRLTV 88

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLA 195
           ++  ++  +R   ++ NPCL ++  K+     +  ++  ++            G + R  
Sbjct: 89  LKRFYRLQLRLGRISENPCLKLKAAKQAARFPKTLSETQVEALLGAPDQEKSLGLRDRAM 148

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---------IITVELPDGFMKLLA 246
            E +  SGLR S+     +  +  N   ++    G             V L        +
Sbjct: 149 IELMYASGLRVSELVDLKLVEVGMNEGVLRIIGKGEKTRLVPFGEEARVWLERYMQDARS 208

Query: 247 MTPIGK--ETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGA 302
           +   GK  +  F+      M    F    K  A K+G++   S H +R   AT   + GA
Sbjct: 209 LILAGKMSDYLFVTARGTAMTRQMFWTLIKKYALKSGIHEPLSPHTLRHAFATHLLNHGA 268

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
               +    G   +   + YT  A +    +   
Sbjct: 269 DLRVVQLLLGHADISTTQIYTHVAQQRLKQLHAM 302


>gi|167627279|ref|YP_001677779.1| site-specific recombinase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|167597280|gb|ABZ87278.1| site-specific recombinase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 292

 Score =  149 bits (375), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 41/265 (15%), Positives = 87/265 (32%), Gaps = 20/265 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKI---TTKHIRSGVESRKHTPSSAIQFLTSMR 141
             L+ N+  S+ +    +       +   +         S      ++  S  + ++++R
Sbjct: 16  HGLSQNTISSYRTDLKFLQSYFSQVELINLDFEQLYAFISYRSKNGYSSRSNARMISTLR 75

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFE 197
             + W +       NP   +  PK      +  T+ D+++           G + +   E
Sbjct: 76  KFYNWLISTGQATTNPTTKLTLPKLAKRLPKDMTEVDVERLLQAPDLTDDIGIRDKAMLE 135

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDGFMKLLAMTPIGKE--- 253
            +  +GLR S+        +  N+  I+    G+    V + +  ++ L           
Sbjct: 136 LMYATGLRVSELVGLNTHDIDLNVGVIQVMGKGSKERIVPIGEYALEYLHKYFEESRELL 195

Query: 254 -------TFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATA 304
                    FI+   +++    F    K+    AG+  + S H +R   AT   + GA  
Sbjct: 196 AKNFKEKAVFISKHSKRITRQSFWHRIKSYVLIAGINTDISPHTLRHAFATHLLNHGADL 255

Query: 305 HELMATYGWKTVDQAETYTKGADRI 329
             +    G   V     YT  +   
Sbjct: 256 RSVQLLLGHSNVSTTTIYTHISQNR 280


>gi|330752024|emb|CBL80536.1| tyrosine recombinase [uncultured Flavobacteria bacterium]
          Length = 323

 Score =  149 bits (375), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 47/264 (17%), Positives = 97/264 (36%), Gaps = 24/264 (9%)

Query: 85  GSLAVNSRISFESYFDQIIR----KSGDFDYRKITTKHIRSGVE--SRKHTPSSAIQFLT 138
             L+ NS  ++    +++++             I  + ++  +   +++  P S  + ++
Sbjct: 43  RGLSENSIANYTFDINKLVKWMVINDIKISPINIEKETLQEFIYTIAKELNPRSQSRIIS 102

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRL 194
            ++  F + V +EY   NP   +E PK   +     + E++    S       +G + R 
Sbjct: 103 GLKGFFNYLVFEEYRTTNPLDLIESPKIGRKLPDILSIEEIDAIISTIDLTKPQGERNRG 162

Query: 195 AFEFLLYSGLRCSDSCRAGVQH--LQNNIFSIKTQKTGTI------ITVELPDGFMKLLA 246
             E L   GLR S+     +           +  +           +T++  D +   + 
Sbjct: 163 IIEVLYGCGLRVSELINLKISDLFFDEGFIKVTGKGNKQRFVPIGSLTIKFIDIYRNEIR 222

Query: 247 ----MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
               + P  ++T F+N     +         K    KAG++K  S H  R   AT   + 
Sbjct: 223 VHQVIKPNAQDTLFLNRRGNGLTRAMIFHIVKELTEKAGIHKKISPHTFRHSFATHLLEN 282

Query: 301 GATAHELMATYGWKTVDQAETYTK 324
           GA    +    G +++   E YT 
Sbjct: 283 GADLRAIQQMLGHESITTTEIYTH 306


>gi|257453533|ref|ZP_05618823.1| tyrosine recombinase XerD [Enhydrobacter aerosaccus SK60]
 gi|257448991|gb|EEV23944.1| tyrosine recombinase XerD [Enhydrobacter aerosaccus SK60]
          Length = 314

 Score =  149 bits (375), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 49/278 (17%), Positives = 91/278 (32%), Gaps = 26/278 (9%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS---GVESRKHTP 130
            I ++R+      LA N+R ++      +   +      +     + +    +  +  T 
Sbjct: 23  YIQQFRQELLTRGLATNTRNAYIRDLM-LCETTCSKAITRWDASDVLACLAALYKQGKTA 81

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----W 186
            S  + L+S++  F W +       NPC  ++ PK      +  ++ D+    +      
Sbjct: 82  RSQARALSSLKQFFLWQINANQRDDNPCEHIKTPKLGRALPKDLSESDVDALLASPDTST 141

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVEL-------- 237
             G + +  FE L   GLR S+     +  +  N   ++ T K      V L        
Sbjct: 142 PLGMRDQAMFEVLYACGLRVSELIHLSLSEVNLNAGWLQVTGKGDKTRLVPLGEVAIDVL 201

Query: 238 -------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHG 288
                        +        +  F+      M    F    K  A +AG+    S H 
Sbjct: 202 TDYLTLARPQLCIMKNGRESRCQAVFLTQQGGYMTRQNFWYVIKRYAKQAGIESEISPHT 261

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           +R   AT   + GA    +    G   +   + YT  A
Sbjct: 262 LRHAFATHLLNHGADLRSVQMLLGHSDLSTTQIYTHVA 299


>gi|315633750|ref|ZP_07889040.1| tyrosine recombinase XerD [Aggregatibacter segnis ATCC 33393]
 gi|315477792|gb|EFU68534.1| tyrosine recombinase XerD [Aggregatibacter segnis ATCC 33393]
          Length = 297

 Score =  149 bits (375), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 45/270 (16%), Positives = 93/270 (34%), Gaps = 24/270 (8%)

Query: 85  GSLAVNSRISFESYFDQII-----RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
             L+ N+  S+      +      RK    D   +  +        + +  +S  + L++
Sbjct: 18  KGLSPNTVQSYRLDLTALCDWLSERKLSLLDLDSVDLQTFLGERVEQGYKATSTARLLSA 77

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLA 195
           +R LF++  +++Y   +P   +  PK  +   +  T++ +    +          + +  
Sbjct: 78  IRKLFQYLYQEKYRTDDPSAVLSSPKLPSRLPKYLTEQQVTDLLNVQSLEQPIELRDKAM 137

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLA-----MTP 249
            E L  +GLR ++        +  N   ++   K      V + +     +        P
Sbjct: 138 LELLYATGLRVTELVSLHTDSISLNQGVVRVIGKGNKERIVPMGEEATHWVKQFMLFARP 197

Query: 250 I-----GKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG 301
           I       +  F +    +M    F    K  A  A ++    S H +R   AT   + G
Sbjct: 198 ILLNGQSSDVLFPSRRGTQMTRQTFWHRIKHYAVLAEIDSNMLSPHVLRHAFATHLVNHG 257

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRL 331
           A    +    G   +   + YT  A + RL
Sbjct: 258 ADLRVVQMLLGHSDLSTTQIYTHVA-KERL 286


>gi|260844576|ref|YP_003222354.1| integrase [Escherichia coli O103:H2 str. 12009]
 gi|257759723|dbj|BAI31220.1| integrase [Escherichia coli O103:H2 str. 12009]
          Length = 341

 Score =  149 bits (375), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 60/330 (18%), Positives = 108/330 (32%), Gaps = 29/330 (8%)

Query: 6   RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
           +LPP V   +        Y  K   R        ES  + A    L     + E   + R
Sbjct: 12  KLPPNVYPNK------YSYVWKPTSR--------ESVTLTAIKDGLAALWKRYEETVNNR 57

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
            +  T   L  ++  SA++  L+  ++  +  +  +++   G      I  +HIR  ++ 
Sbjct: 58  DRAMTFGRLWEKFLASAYYSDLSPRTQKDYLQHQKKLLAVFGKVPADSIKPEHIRRYMDK 117

Query: 126 RKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
           R   + + A    +SM  ++ W   + YV  NPC  V + K K       T ++ Q   S
Sbjct: 118 RGEQSKTQANHEKSSMSRVYSWGYERGYVKGNPCAGVSKFKAKNRERYV-TDKEYQAVLS 176

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
                    +A E       R SD      + + N+   I+  KTG              
Sbjct: 177 VAPL--PVFIAMEIAYLCAARVSDVLSLKWEQIGNDGIFIQQGKTGKKQIKAWSPRLQAA 234

Query: 245 LAMTP--IGKETFFINNDKQKMNATQFSIWFKAKATKAG------VNKSAHGVRKFSATI 296
           +              N    +     F+  +     +AG       + + H + K     
Sbjct: 235 IEKAKQLPTSAYVISNQYGNRYMYKGFNEMWVEARNRAGKISGILTDFTFHDL-KAKGIS 293

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326
             +   ++ +     G KT  Q   Y +  
Sbjct: 294 DYE--GSSRDKQLFSGHKTEGQVLIYDRKV 321


>gi|189502574|ref|YP_001958291.1| hypothetical protein Aasi_1239 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189498015|gb|ACE06562.1| hypothetical protein Aasi_1239 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 299

 Score =  149 bits (375), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 60/282 (21%), Positives = 109/282 (38%), Gaps = 28/282 (9%)

Query: 70  TLKWLISEYRKSAHW-GSLAVNSRISFESYFDQII-----RKSGDFDYRKITTKHIRSGV 123
           T +  I ++        SLA NS +++ S   ++      R+ G      + T H+R  +
Sbjct: 2   TWELAIQQFEIHLQLERSLAENSILAYGSDLRKLCQFIELRQLGLSPLT-LQTTHLRDFL 60

Query: 124 E---SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                     +S  + L+++R  +++ + + Y+  +P   VERP    +     +  +++
Sbjct: 61  MYLYELGIGATSQARILSAIRGFYQFLLLEGYLETDPTKLVERPVLGRKLPHTLSVHEIE 120

Query: 181 QFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITV 235
                       G + R   E L  SGLR S+     +  +      ++   K      V
Sbjct: 121 ILFGTIDHSTAMGMRNRAMLETLYSSGLRVSELISLRMSDIYFEEMFLQVLGKGNKQRLV 180

Query: 236 ELPDGFMKLLAM--------TPIGKET---FFINNDKQKMNATQFSIWFKAKATKAGVNK 284
            +    +K L +         PI KE     F+N    KM+     +  K  A+KAG+ +
Sbjct: 181 PIGKIALKYLRIYIEEVRIHFPIKKEAANCVFLNKRGSKMSRVMVFLIIKELASKAGLQQ 240

Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             S H  R   AT   + GA    + A  G +++   E YT 
Sbjct: 241 EISPHTFRHSFATHLVEGGADLRAVQAMLGHESITTTEIYTH 282


>gi|257869544|ref|ZP_05649197.1| phage integrase [Enterococcus gallinarum EG2]
 gi|257803708|gb|EEV32530.1| phage integrase [Enterococcus gallinarum EG2]
          Length = 296

 Score =  149 bits (375), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 43/264 (16%), Positives = 98/264 (37%), Gaps = 24/264 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH------IRSGVESRKHTPSSAIQFLT 138
             L+ N+R S+E   +Q +    +   +                ++    + ++ I+ ++
Sbjct: 16  RGLSQNTRKSYERDLEQYLTFLTEQHIKDWQAVDRVLILSFLQQLQQSGKSSATIIRMVS 75

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRL 194
           S+R   ++  ++ +   +P   ++ PK++ +     +  ++++           G + R 
Sbjct: 76  SLRRFHQFLRQERFTDHDPMQHIDSPKKQQKLPDTLSLSEVERLIETPDTKEVLGIRDRA 135

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVEL-----------PDGFM 242
             E +  +GLR S+     ++ L  ++  +  T K      V L            +   
Sbjct: 136 ILEVMYATGLRVSELIGLQLKDLHLSMGLLQTTGKGDKERIVPLGDLAIQWIETYLEEAR 195

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
             L      +   F+NN  ++++        KA   KAG+ K  + H +R   AT   + 
Sbjct: 196 PFLTRKHPEESHLFVNNHGKQLSRQGIWKNLKALVRKAGITKNVTPHTLRHSFATHLLEN 255

Query: 301 GATAHELMATYGWKTVDQAETYTK 324
           GA    +    G   +   + YT 
Sbjct: 256 GADLRTVQELLGHADISTTQIYTH 279


>gi|329962342|ref|ZP_08300347.1| tyrosine recombinase XerD [Bacteroides fluxus YIT 12057]
 gi|328530203|gb|EGF57084.1| tyrosine recombinase XerD [Bacteroides fluxus YIT 12057]
          Length = 317

 Score =  149 bits (375), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 54/275 (19%), Positives = 102/275 (37%), Gaps = 24/275 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQII-----RKSGDFDYRKITTKHIRSGVESRK 127
           +I +Y +      SL+ N+  ++ +  ++++      K           +   +G+    
Sbjct: 16  IIRKYNQYLKLEKSLSPNTLDAYRTDLEKLLRFLEAEKIDILAVTLDDLQRFTAGLHDIG 75

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
             P S  + L+ ++  F + V  +Y+  +P   +E PK   +     T E++ +  S   
Sbjct: 76  IHPRSQARILSGIKSFFHFLVLADYLEGDPSELLEGPKIGFKLPEVLTVEEIDKIISTVD 135

Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-VELPDGFM 242
               EG + R   E L   GLR S+ C   +  L  +   IK +  G+    V +    +
Sbjct: 136 LSTNEGQRNRAILETLYSCGLRVSELCNLKISDLYFDEGFIKVEGKGSKQRLVPISPRAI 195

Query: 243 KLLAMTPIGK-----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289
           K +      +           +  F+      ++        K  A KAG+ K  S H  
Sbjct: 196 KEIKNWFADRNEKWKIKKDFEDYVFLARWGNGISRIMIFHLIKELAEKAGITKNISPHTF 255

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           R   AT   + GA    +    G +++   E YT 
Sbjct: 256 RHSFATHLLEGGANLRAIQCMLGHESIATTEIYTH 290


>gi|293610050|ref|ZP_06692351.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827282|gb|EFF85646.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 306

 Score =  149 bits (375), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 55/292 (18%), Positives = 104/292 (35%), Gaps = 20/292 (6%)

Query: 57  KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT 116
           K+  I SP + P  L +L   +R      +++ ++R ++ S   Q           + T+
Sbjct: 4   KKPRIPSPVQIPEHLSFL-QGFRDYLVAQTVSPHTRNAYLSDLIQCSELHKKSLLPEWTS 62

Query: 117 KHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
            +I   +        +P S  + L+++R  +K+   Q+  + NP  +   PK      + 
Sbjct: 63  DNIADVLIELTKVGKSPRSIARCLSALRQFYKFLREQKLRSDNPVATHHSPKIGRALPKD 122

Query: 174 WTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQK 228
            ++ED++            G + R  FE L   GLR S+     ++ +      ++ T K
Sbjct: 123 LSEEDVEALIQAPDINTALGLRDRAMFEVLYACGLRVSELLNLRLELINLKQGYLRITGK 182

Query: 229 TGTIITVELPDGFMKLLAMT---------PIGKETFFINNDKQKMNATQFSIWFKAKATK 279
                 V L     + +                +  F+      M+   F    K  A +
Sbjct: 183 GNKERLVPLGQFACEWVERYLQDARPQLYKSSTDYLFLTQHGGIMSRQNFWYAIKRYALQ 242

Query: 280 AGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           A +    S H +R   AT   + GA    +    G   +   + YT  A   
Sbjct: 243 ANIQAELSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVR 294


>gi|255320980|ref|ZP_05362153.1| tyrosine recombinase XerD [Acinetobacter radioresistens SK82]
 gi|262379931|ref|ZP_06073086.1| tyrosine recombinase XerD [Acinetobacter radioresistens SH164]
 gi|255301944|gb|EET81188.1| tyrosine recombinase XerD [Acinetobacter radioresistens SK82]
 gi|262298125|gb|EEY86039.1| tyrosine recombinase XerD [Acinetobacter radioresistens SH164]
          Length = 306

 Score =  149 bits (375), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 53/290 (18%), Positives = 105/290 (36%), Gaps = 20/290 (6%)

Query: 57  KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT 116
           K+  I SP + P  L +L   +R      +++ ++R ++ S   Q              +
Sbjct: 4   KKPRIPSPVQIPEHLSFL-QGFRDFLIAQTVSPHTRNAYLSDLIQCSEYCPSTPLPLWNS 62

Query: 117 KHIRS---GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
           + I      +  +  +P S  + L+++R  FK+   Q+  + NP  + + PK      + 
Sbjct: 63  EDIADVLFELTKQGKSPRSIARTLSALRSFFKFMREQQLRSDNPVATHKTPKLGRALPKD 122

Query: 174 WTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQK 228
            ++ D++            G + R   E L   GLR ++     ++ +      ++ T K
Sbjct: 123 LSELDVEHLLHAPDINTALGLRDRAMLEVLYACGLRVTELLNLRLELINLKQGYLRITGK 182

Query: 229 TGTIITVELPDGFMKLL---------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATK 279
                 V L    ++ +          +     +  F+      M+   F    K  A +
Sbjct: 183 GNKERLVPLGQVAIEWVEKYLNEARPQLYKSATDYLFLTQHGGIMSRQNFWYAIKRYALQ 242

Query: 280 AGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           AG+    S H +R   AT   + GA    +    G   +   + YT  A 
Sbjct: 243 AGIQAELSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQ 292


>gi|239502060|ref|ZP_04661370.1| tyrosine recombinase XerD [Acinetobacter baumannii AB900]
          Length = 306

 Score =  149 bits (375), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 54/294 (18%), Positives = 105/294 (35%), Gaps = 20/294 (6%)

Query: 55  TPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF---DQIIRKSGDFDY 111
             K+  I SP + P  L +L   +R      +++ ++R ++ S      ++ +K+   D+
Sbjct: 2   INKKPRIPSPVQIPEHLSFL-QGFRDYLVAQTVSPHTRNAYLSDLIQCSELHKKNRLPDW 60

Query: 112 RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
                  +   +     +P S  + L+++R  +K+   Q+  + NP  +   PK      
Sbjct: 61  TSDDISDVLIELTKVGKSPRSIARCLSALRQFYKFLREQKLRSDNPVATHHSPKIGRALP 120

Query: 172 RPWTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-T 226
           +  ++ED++            G + R  FE L   GLR S+     ++ +      ++ T
Sbjct: 121 KDLSEEDVEALIQAPDITTALGLRDRAMFEILYACGLRVSELLNLRLELINLKQGYLRIT 180

Query: 227 QKTGTIITVELPDGFMKLLAMT---------PIGKETFFINNDKQKMNATQFSIWFKAKA 277
            K      V L       +                +  F+      M+   F    K  A
Sbjct: 181 GKGNKERLVPLGQYACDWVERYLNEARPQLYKSSTDYLFLTQHGGIMSRQNFWYAIKRYA 240

Query: 278 TKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            +A +    S H +R   AT   + GA    +    G   +   + YT  A   
Sbjct: 241 LQANIQAELSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVR 294


>gi|170693510|ref|ZP_02884669.1| tyrosine recombinase XerD [Burkholderia graminis C4D1M]
 gi|170141665|gb|EDT09834.1| tyrosine recombinase XerD [Burkholderia graminis C4D1M]
          Length = 322

 Score =  149 bits (375), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 53/306 (17%), Positives = 95/306 (31%), Gaps = 27/306 (8%)

Query: 49  SALTGSTPKREYINSP--RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS 106
           SA  G+     +  SP       ++               L+ N+  ++           
Sbjct: 10  SADQGADASAGFAQSPLFAASSASIDAFCDALWLE---HGLSRNTLDAYRRDLRLFSEWL 66

Query: 107 GDFDYRKITTKHIRSG----VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162
                  +               RK   +SA + L+  R  + WAVR+    ++P L + 
Sbjct: 67  AQTRGASLDIASEADLNAYSAARRKDKSTSANRRLSVFRRYYGWAVREHRAKVDPTLRIR 126

Query: 163 RPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218
             K+        ++  ++            G + R   E +  SGLR ++        + 
Sbjct: 127 SAKQPPRFPSTLSEAQVEALLGAPDIDTPLGLRDRTMLELMYASGLRVTELVTLKTVEVG 186

Query: 219 NNIFSIKTQKTGT-IITVELPDGFMKLLAM----------TPIGKETFFINNDKQKMNAT 267
            N   ++    G+    +   +     +                 +  F+ N  + M   
Sbjct: 187 LNEGVVRVMGKGSKERLIPFGEEAHGWIERYLRDARPALLGARAADALFVTNRAEGMTRQ 246

Query: 268 QFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           QF    K  A  AGV+   S H +R   AT   + GA    +    G   +   + YT  
Sbjct: 247 QFWNIIKRHAAAAGVHAPLSPHTLRHAFATHLLNHGADLRVVQLLLGHTDISTTQIYTHV 306

Query: 326 ADRIRL 331
           A R RL
Sbjct: 307 A-RERL 311


>gi|295398591|ref|ZP_06808623.1| tyrosine recombinase XerD [Aerococcus viridans ATCC 11563]
 gi|294973192|gb|EFG48987.1| tyrosine recombinase XerD [Aerococcus viridans ATCC 11563]
          Length = 309

 Score =  149 bits (375), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 47/278 (16%), Positives = 99/278 (35%), Gaps = 28/278 (10%)

Query: 74  LISEYRKSAHWGS-LAVNSRISFESYFDQIIRKSGDFDYRKITT-------KHIRSGVES 125
           +I ++  +      LA NS IS++   ++++         K+          H++   E 
Sbjct: 16  VIEDFLNTMRVEEGLAENSIISYKQELNRMMTYLNRQGIEKVQVISQDTVLDHLKWMDED 75

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
              T S+   +++++R  F++      +  NP   +  PK+        T +++ +  + 
Sbjct: 76  HLAT-STRSHYVSTLRHFFRYLKLDGVIEDNPMEKISLPKKTQHLPAVLTLDEVDRILAT 134

Query: 186 W----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240
                  G + R   E L  +G+R S+     ++ +  ++  I+T  K G    V + + 
Sbjct: 135 PDITKPLGLRDRTLLETLYSTGMRVSEIIHIKLEDIHLDMGFIQTIGKGGKERLVPIGEM 194

Query: 241 FMKLLAMTPIGKE------------TFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286
               +                      F+NN  + ++        K     A + K  S 
Sbjct: 195 AEDWINKYLTEGRPKLVKDEDETQGYLFVNNRGKPLSRQGVWKNLKKMVMMAHITKDISP 254

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           H +R   AT   + GA    +    G   +   + YT 
Sbjct: 255 HTLRHSFATHLLENGADLRVVQELLGHSDISTTQIYTH 292


>gi|323702534|ref|ZP_08114197.1| tyrosine recombinase XerD [Desulfotomaculum nigrificans DSM 574]
 gi|323532508|gb|EGB22384.1| tyrosine recombinase XerD [Desulfotomaculum nigrificans DSM 574]
          Length = 296

 Score =  149 bits (375), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 44/265 (16%), Positives = 94/265 (35%), Gaps = 26/265 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTK-------HIRSGVESRKHTPSSAIQFL 137
             LA N+  S+     Q +          I          H+    +S K  P++  + L
Sbjct: 16  RGLAQNTLASYRIDLSQYLSHLKKQGVTAIDQANRNHVLTHLYKLQKSGKA-PATISRHL 74

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FWSEGSQPR 193
            +++  +++ +    V  +P +++E PK      +  T  +++   S        G + +
Sbjct: 75  AALKHFYRFLLADGVVTEDPTVNLESPKLGQRLPQVLTTAEVEALLSQPQLADPAGLRDK 134

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLA------ 246
              E +  +G+R S+     ++H++ ++  I+   K      + L       +       
Sbjct: 135 AMLELIYATGIRVSEMVTLDIEHVELDMGYIRCFGKGSKERIIPLGAVAAHYVREYLARS 194

Query: 247 -----MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
                         F+N   +++    F    K  A +A +NK  + H +R   AT   +
Sbjct: 195 RVKLTKGKTEHRALFVNAQGKRLTRQGFWKILKKYAREANINKHITPHTLRHSFATHLLE 254

Query: 300 AGATAHELMATYGWKTVDQAETYTK 324
            GA    +    G   +   + YT 
Sbjct: 255 NGADLRSVQEMLGHADISTTQIYTH 279


>gi|37527425|ref|NP_930769.1| site-specific tyrosine recombinase XerD [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|36786860|emb|CAE15925.1| Integrase/recombinase xerD [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 303

 Score =  149 bits (375), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 51/284 (17%), Positives = 102/284 (35%), Gaps = 27/284 (9%)

Query: 74  LISEYRKSAHW--GSLAVNSRISFE---SYFDQIIRKSGD--FDYRKITTKHIRSGVESR 126
           LI ++   A W    LA N+  S+       D  +   G      + I      +     
Sbjct: 12  LIEQFL-DAIWLEHDLAENTLASYRLDLQALDNWLIHHGHNLLSVQTIDLHSFLAERVDG 70

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185
            +  SS+ + L++MR LF +  R++    +P   +  PK      +  +++ ++   +  
Sbjct: 71  GYKASSSARLLSAMRQLFLYFYREKMREDDPTALLSAPKLPKRLPKDLSEKQVEDLLNAP 130

Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-------- 234
                   + +   E L   GLR S+     +  +      ++    G            
Sbjct: 131 CTDQPVELRDKAMLEVLYACGLRVSELVGLTLSDVSLRQGVVRVIGKGNKERLVPLGEEA 190

Query: 235 VELPDGFMKLLAMTPIGKETF---FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288
           +   + +++   +  +   T    F +N  ++M    F    K  A  AG++    S H 
Sbjct: 191 IYWLENYLEYGRVGLLNGATLDVLFPSNRGRQMTRQTFWYRIKHYALLAGIDTGRLSPHV 250

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRL 331
           +R   AT   + GA    +    G   +   + YT  A +R++L
Sbjct: 251 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKL 294


>gi|169797492|ref|YP_001715285.1| site-specific tyrosine recombinase [Acinetobacter baumannii AYE]
 gi|213155694|ref|YP_002317739.1| tyrosine recombinase XerD [Acinetobacter baumannii AB0057]
 gi|215484928|ref|YP_002327167.1| tyrosine recombinase XerD [Acinetobacter baumannii AB307-0294]
 gi|260556384|ref|ZP_05828603.1| tyrosine recombinase XerD [Acinetobacter baumannii ATCC 19606]
 gi|294838164|ref|ZP_06782847.1| site-specific tyrosine recombinase [Acinetobacter sp. 6013113]
 gi|294857848|ref|ZP_06795617.1| site-specific tyrosine recombinase [Acinetobacter sp. 6013150]
 gi|301346533|ref|ZP_07227274.1| site-specific tyrosine recombinase [Acinetobacter baumannii AB056]
 gi|301512500|ref|ZP_07237737.1| site-specific tyrosine recombinase [Acinetobacter baumannii AB058]
 gi|301594843|ref|ZP_07239851.1| site-specific tyrosine recombinase [Acinetobacter baumannii AB059]
 gi|169150419|emb|CAM88316.1| site-specific tyrosine recombinase [Acinetobacter baumannii AYE]
 gi|213054854|gb|ACJ39756.1| tyrosine recombinase XerD [Acinetobacter baumannii AB0057]
 gi|213986144|gb|ACJ56443.1| tyrosine recombinase XerD [Acinetobacter baumannii AB307-0294]
 gi|260410439|gb|EEX03738.1| tyrosine recombinase XerD [Acinetobacter baumannii ATCC 19606]
          Length = 306

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 54/294 (18%), Positives = 105/294 (35%), Gaps = 20/294 (6%)

Query: 55  TPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF---DQIIRKSGDFDY 111
             K+  I SP + P  L +L   +R      +++ ++R ++ S      ++ +K+   D+
Sbjct: 2   INKKPRIPSPVQIPEHLSFL-QGFRDYLVAQTVSPHTRNAYLSDLIQCSELHKKNRLPDW 60

Query: 112 RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
                  +   +     +P S  + L+++R  +K+   Q+  + NP  +   PK      
Sbjct: 61  TSDDISDVLIELTKVGKSPRSIARCLSALRQFYKFLREQKLRSDNPVATHHSPKIGRALP 120

Query: 172 RPWTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-T 226
           +  ++ED++            G + R  FE L   GLR S+     ++ +      ++ T
Sbjct: 121 KDLSEEDVEALIQAPDITTALGLRDRAMFEVLYACGLRVSELLNLRLELINLKQGYLRIT 180

Query: 227 QKTGTIITVELPDGFMKLLAMT---------PIGKETFFINNDKQKMNATQFSIWFKAKA 277
            K      V L       +                +  F+      M+   F    K  A
Sbjct: 181 GKGNKERLVPLGQYACDWVERYLNEARPQLYKSSTDYLFLTQHGGIMSRQNFWYAIKRYA 240

Query: 278 TKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            +A +    S H +R   AT   + GA    +    G   +   + YT  A   
Sbjct: 241 LQANIQAELSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVR 294


>gi|296157219|ref|ZP_06840055.1| tyrosine recombinase XerD [Burkholderia sp. Ch1-1]
 gi|295892555|gb|EFG72337.1| tyrosine recombinase XerD [Burkholderia sp. Ch1-1]
          Length = 311

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 49/287 (17%), Positives = 89/287 (31%), Gaps = 25/287 (8%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG--- 122
               ++               L+ N+  ++                  + T         
Sbjct: 18  ASSASIDAFCDALWLE---HGLSRNTLDAYRRDLRLFCEWLAQSRNASLDTASEADLNAY 74

Query: 123 -VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
               +K   +SA + L+  R  + WAVR+    I+P + +   K+        T+  ++ 
Sbjct: 75  SAARQKDKSTSANRRLSVFRRYYSWAVREHRTKIDPTVRIRSAKQPPRFPSTLTEAQVEA 134

Query: 182 FKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVE 236
                      G + R   E +  SGLR ++        +  N   ++    G+    + 
Sbjct: 135 LLGAPDVDTPLGLRDRTMLELMYASGLRVTELVTLKTVEVGLNEGVVRVMGKGSKERLIP 194

Query: 237 LPDGFMKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284
             +     +                 +  F+ +  + M   QF    K  A  AGVN   
Sbjct: 195 FGEEAHGWIERYLREARPVLLGARATDALFVTSRAEGMTRQQFWNIIKRHAAAAGVNAPL 254

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           S H +R   AT   + GA    +    G   +   + YT  A R RL
Sbjct: 255 SPHTLRHAFATHLLNHGADLRVVQLLLGHTDISTTQIYTHVA-RERL 300


>gi|220904455|ref|YP_002479767.1| tyrosine recombinase XerD [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219868754|gb|ACL49089.1| tyrosine recombinase XerD [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 310

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 52/271 (19%), Positives = 101/271 (37%), Gaps = 26/271 (9%)

Query: 85  GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKH-----IRSGVESRKHTPSSAIQF 136
             L+  +  S+    +      ++    +               + + +R++T  +  + 
Sbjct: 29  RGLSPQTVASYGQDLENFFLFRQELAQGEAVSPQPDEQEIFLYLAWLRARQNTGRTLARR 88

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQP 192
           L+++R  F +AV++  +  NP   ++ PK         ++++M+   +        G + 
Sbjct: 89  LSALRAFFDFAVQENAIKNNPAQLLDNPKLPQHLPEVLSRDEMESLLARPDLRDRGGQRD 148

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLL------ 245
           R   E L  +GLR S+ C   +  L      ++   K      V L D    +L      
Sbjct: 149 RCILELLYAAGLRVSELCDLCLPDLDLQRGLVRVFGKGAKERLVPLHDLMQNMLENYIRD 208

Query: 246 ---AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
              A +P G +  F+N   + +         K  A +AG+ +  S H  R   AT   + 
Sbjct: 209 WRPAFSPTGNQ-LFVNRSGRALTRQYIWKMVKKYALEAGIRRPVSPHTFRHSFATHLLEG 267

Query: 301 GATAHELMATYGWKTVDQAETYTK-GADRIR 330
           GA    +    G   +   E YT   A+R+R
Sbjct: 268 GADLRAVQLLLGHADISATEIYTHVQAERLR 298


>gi|226311968|ref|YP_002771862.1| tyrosine recombinase [Brevibacillus brevis NBRC 100599]
 gi|226094916|dbj|BAH43358.1| probable tyrosine recombinase [Brevibacillus brevis NBRC 100599]
          Length = 295

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 45/280 (16%), Positives = 104/280 (37%), Gaps = 30/280 (10%)

Query: 72  KWLISEYRKSAHW----GSLAVNSRISFES---YFDQIIRKSGDFDYRKITTKHIRSGVE 124
             LI ++    H+      L+ N+  S++     F   +++ G       T  HI   + 
Sbjct: 2   DSLIDQF---IHFLTVEKGLSRNTLESYQRDMVAFTSYLQEQGVTRVEDSTRTHIIGYLL 58

Query: 125 SRKHTPSSAIQF---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
             +    +       + S+R  +++ +R +Y+  +P + +E PK +    +  + E++++
Sbjct: 59  VLREKGRATATLSRNMASIRAFYQFLIRDKYIDKDPSIHLETPKIEKRLPKVLSVEEVER 118

Query: 182 FKS----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE 236
                      G + +   E L  +G+R S+        +  ++  +K   K      + 
Sbjct: 119 LLESPPVNHPAGLRDKAMLELLYATGIRVSELVNLDSADVNLDMGFVKCLGKGSKERIIP 178

Query: 237 LPDGFMKLLA----------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284
           L    ++++           +   G    F+N+  +++    F    K  A K+ +    
Sbjct: 179 LGSVAIQMVRHYLQAGRPKMVKGTGDTALFLNHLGKQITRQGFWKIIKRYAQKSNIRAEI 238

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           + H +R   AT   + GA    +    G   +   + YT 
Sbjct: 239 TPHTLRHSFATHLLENGADLRSVQEMLGHADISTTQIYTH 278


>gi|86131894|ref|ZP_01050491.1| phage integrase family protein [Dokdonia donghaensis MED134]
 gi|85817716|gb|EAQ38890.1| phage integrase family protein [Dokdonia donghaensis MED134]
          Length = 299

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 45/278 (16%), Positives = 99/278 (35%), Gaps = 27/278 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDF----DYRKITTKHIRSGVE--SRKHTPSSAIQFLT 138
             L+ N+  ++     ++ R         +  +IT + ++  +   +++    S  + ++
Sbjct: 18  RGLSDNTIDNYARDLKKLTRYLEQLENSINPLQITREDLQEFIYTIAKEVQARSQARVIS 77

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRL 194
            ++  F + V ++Y   NP   +E PK   +     ++E++            +G + R 
Sbjct: 78  GLKGFFNYLVFEDYRTDNPIDLIESPKIGRKLPDTLSEEEIDALIDAIDLGKPQGERNRA 137

Query: 195 AFEFLLYSGLRCSDSCRAGVQH--LQNNIFSIKTQKTGTIITVELPD-----------GF 241
             E L   GLR ++     +     +    ++   K      V + +             
Sbjct: 138 MLETLYSCGLRVTELISLKLSDLYFEEGFINV-VGKGDKQRFVPISEHTQKYINIYRNEL 196

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
              + + P   +  F+N   +++         K  A KA + K  S H  R   AT    
Sbjct: 197 RNHIDVKPEHVDILFLNRRGRQLTRAMIFTIIKDLAIKADIKKNISPHTFRHSFATHLLQ 256

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
            GA    +    G +++   E Y    DR  L  + ++
Sbjct: 257 NGADLRSIQQMLGHESITTTEIYMH-VDRNDLAREMAK 293


>gi|313884218|ref|ZP_07817984.1| tyrosine recombinase XerD [Eremococcus coleocola ACS-139-V-Col8]
 gi|312620665|gb|EFR32088.1| tyrosine recombinase XerD [Eremococcus coleocola ACS-139-V-Col8]
          Length = 301

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 48/278 (17%), Positives = 95/278 (34%), Gaps = 28/278 (10%)

Query: 75  ISEYRKSA-HW----GSLAVNSRISFESYFDQIIR--KSGDFDY----RKITTKHIRSGV 123
           I +Y      +      L+ N+  ++E    +  R  +  + D          +   + +
Sbjct: 7   IDDYLSDFLRFLAIDKGLSQNTIANYELDLKKFFRFCQIQNMDLLSQIDTDLVRLFIASL 66

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
               +  S+A + L+S+R  F + + +  V+ NP   +E PK+        +  +++   
Sbjct: 67  NKAGYAASTAARILSSLRAFFHFLMVEGVVSKNPMALIESPKKARTLPHSLSMAEVEAIL 126

Query: 184 SF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELP 238
           +        G + R  FE L  +GLR S+     +  L  +  F     K      V L 
Sbjct: 127 AAPNTDTKFGIRDRAMFETLYATGLRVSELANLSLGDLHLDLRFIQTLGKGNKERMVPLG 186

Query: 239 DGFMKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286
           +  +  +               G +  F+    +               + AG+ K  S 
Sbjct: 187 EEAVFWIEKYLDQVRDGWLPKAGSDYLFLTQRGKAFTRQGIWKTLNKYVSLAGIQKKVSP 246

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           H +R   AT   + GA    +    G + +   + YT 
Sbjct: 247 HVLRHSFATHILENGADLRLVQELLGHENISTTQIYTH 284


>gi|317128498|ref|YP_004094780.1| tyrosine recombinase XerD [Bacillus cellulosilyticus DSM 2522]
 gi|315473446|gb|ADU30049.1| tyrosine recombinase XerD [Bacillus cellulosilyticus DSM 2522]
          Length = 296

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 45/264 (17%), Positives = 98/264 (37%), Gaps = 24/264 (9%)

Query: 85  GSLAVNSRISFES----YFDQIIRKSGDFDYRKITTKHIRSGVESRKHT---PSSAIQFL 137
             L+ N+  ++      Y   I       D  +I    I   +   K     P++  + +
Sbjct: 16  RGLSKNTTEAYNRDLTAYIQYIESHENKKDVNEINRPAIMQYLYFLKDNGRAPTTITRNI 75

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK----SFWSEGSQPR 193
           +S+R   ++ +R+   + +P + + RPK++ +  +  +  +++          +   + +
Sbjct: 76  SSIRAFHQFLLRERLSSSDPTIHISRPKQEKKLPKILSTTEVEALISASVKNPALNIRNK 135

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM----- 247
              E L  +G+R S+ C+  +  L  ++  I+   K      + + +   K L       
Sbjct: 136 AMLEVLYATGIRVSELCQLSLSDLHLDMGFIRCIGKGNKERIIPIGNVATKALETYLQKS 195

Query: 248 -----TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
                        F+N+   KM+   F    K  A +A + K  + H +R   AT   + 
Sbjct: 196 RPTLLKKQAHSILFVNHHGNKMSRQGFWKIIKLLAKEANIKKELTPHTLRHSFATHLLEN 255

Query: 301 GATAHELMATYGWKTVDQAETYTK 324
           GA    +    G   +   + YT 
Sbjct: 256 GADLRAVQEMLGHVDISTTQIYTH 279


>gi|251791941|ref|YP_003006661.1| site-specific tyrosine recombinase XerD [Aggregatibacter
           aphrophilus NJ8700]
 gi|247533328|gb|ACS96574.1| tyrosine recombinase XerD [Aggregatibacter aphrophilus NJ8700]
          Length = 297

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 45/270 (16%), Positives = 94/270 (34%), Gaps = 24/270 (8%)

Query: 85  GSLAVNSRISFESYFDQIIR-----KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
             L+ N+  S+      +       K        +  +        + +  +S  + L++
Sbjct: 18  KGLSPNTVQSYRLDLTALCDWLEVHKLSLLTLDAVDLQTFLGERLQQGYKATSTARLLSA 77

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLA 195
           MR LF++  +++Y   +P   +  PK  +   +  T++ +    +          + +  
Sbjct: 78  MRKLFQYLYKEKYRTDDPSAVLSSPKLPSRLPKYLTEQQVTDLLNVQSLEQPVELRDKAM 137

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLA-----MTP 249
            E L  +GLR ++    G   +  N   ++   K      V + +     +      + P
Sbjct: 138 LELLYATGLRVTELVTLGTDSINLNQGVVRVIGKGNKERIVPMGEEATHWIKQYILFVRP 197

Query: 250 I-----GKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG 301
           I       +  F +    +M    F    K  A +A ++    S H +R   AT   + G
Sbjct: 198 ILLDGQSSDVLFPSRRGTQMTRQTFWHRIKHYAVRAEIDSDMLSPHVLRHAFATHLVNHG 257

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRL 331
           A    +    G   +   + YT  A + RL
Sbjct: 258 ADLRVVQMLLGHSDLSTTQIYTHVA-KERL 286


>gi|224476610|ref|YP_002634216.1| putative site-specific recombinase XerD [Staphylococcus carnosus
           subsp. carnosus TM300]
 gi|222421217|emb|CAL28031.1| putative site-specific recombinase XerD [Staphylococcus carnosus
           subsp. carnosus TM300]
          Length = 299

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 47/275 (17%), Positives = 102/275 (37%), Gaps = 24/275 (8%)

Query: 74  LISEYRKSAH-WGSLAVNSRISFESYFDQ-----IIRKSGDFDY-RKITTKHIRSGVESR 126
           +I EY K       L+ N+  ++    ++     +++K  + D+  +   +     +   
Sbjct: 8   VIEEYLKFIQIEKGLSANTIGAYRRDLNKYKEYLVLKKINNIDFIDREIIQQCLGYLHDD 67

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            H+  S  +F++++R   ++A+R+ Y A +P + +E PK +         ED+       
Sbjct: 68  GHSAKSIARFISTVRSFHQFALRERYAAKDPTVLIETPKYERRLPDVLDVEDVLALLETP 127

Query: 187 SE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241
                 G + R   E L  +G+R ++     V+ +   +  ++   K      + L +  
Sbjct: 128 DLSKNNGYRDRTILELLYATGMRVTELIHVRVEDVNLIMGFVRVFGKGSKERIIPLGETV 187

Query: 242 MKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289
           +  L                 +  F+N   + ++        K    KA + K  + H +
Sbjct: 188 IDYLKKYIETVRPQLLKQTVTDVLFLNLHGKPLSRQGIWKLIKQYGVKANIKKKLTPHSL 247

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           R   AT   + GA    +    G   +   + YT 
Sbjct: 248 RHSFATHLLENGADLRAVQEMLGHSDISTTQLYTH 282


>gi|163750315|ref|ZP_02157556.1| integrase/recombinase XerD [Shewanella benthica KT99]
 gi|161329987|gb|EDQ00972.1| integrase/recombinase XerD [Shewanella benthica KT99]
          Length = 308

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 52/276 (18%), Positives = 108/276 (39%), Gaps = 25/276 (9%)

Query: 85  GSLAVNSRISFE---SYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT---PSSAIQFLT 138
             L+ N+  ++     +FD+ ++K G     +++ + IR  ++ R       +S+ + ++
Sbjct: 30  RGLSDNTLAAYRTDLRHFDRYMQKLG-GGLVQVSQQLIRDYLDVRFDKGFARTSSARLMS 88

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194
           S+R  + + + ++ + ++P   ++ PK   +     ++ D+    +          + R 
Sbjct: 89  SLRRFYGFLILKKLIQVDPIARIKSPKLARKLPDSLSEADVDILLNEPDLQEPIECRDRA 148

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG--------FMKLL 245
             E L  +GLR ++     ++ L      ++   K G    V L +              
Sbjct: 149 MLELLYATGLRVTELVSLTMEQLSLRQGLVRVVGKGGKERLVPLGEIAVNEVEHYLEGAR 208

Query: 246 AMTPIGK--ETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAG 301
           A    GK  +  F +   Q M    F    K  A +AG+  + S H +R   AT   + G
Sbjct: 209 AELLKGKLSDVLFPSRRGQMMTRQTFWHRIKLYALRAGIVTHISPHTMRHAFATHLLNHG 268

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
           A    +    G   +   + YT  A + RL   +S 
Sbjct: 269 ADLRVVQLLLGHSDLSTTQIYTHVA-KARLSQLHSE 303


>gi|327479757|gb|AEA83067.1| site-specific tyrosine recombinase XerD [Pseudomonas stutzeri DSM
           4166]
          Length = 298

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 56/288 (19%), Positives = 111/288 (38%), Gaps = 28/288 (9%)

Query: 74  LISEYRKSAHW--GSLAVNSRISFESYF---DQIIRKSG---DFDYRKITTKHIRSGVES 125
           +I  Y   A W    LA NSR ++ +     +  +++ G       R+I   H+ +   +
Sbjct: 8   VIDRYL-DALWLEKGLADNSREAYRNDLASFNGWLQERGVRLAAAGREIILDHL-AWRLN 65

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
             +   S  +FL+ +R  +++ +R+  ++++P L V+ P+      +  ++ D++   + 
Sbjct: 66  NGYKARSTARFLSGLRGFYRYLLREGEISLDPTLRVDLPRLGRPLPKALSEADVEALLAA 125

Query: 186 ----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240
                  G + R   E L   GLR ++     ++ +      ++T  K      V L + 
Sbjct: 126 PDTGDPLGLRDRAMLEVLYACGLRVTELISLTLEQVSMRQGVLRTFGKGNKERLVPLGEE 185

Query: 241 FMKLLAMTPIGK----------ETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHG 288
            +  L                 +  F +   ++M    F    K  A  AG+    S H 
Sbjct: 186 ALHWLQRYQRDARDQLLAGRPSDVLFPSQRGEQMTRQTFWHRIKLHARVAGIATGISPHT 245

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
           +R   AT   + GA    +    G   +   + YT  A R RL   ++
Sbjct: 246 LRHAFATHLLNHGADLRTVQMLLGHSDLSTTQIYTHIA-RARLQELHA 292


>gi|50083543|ref|YP_045053.1| site-specific tyrosine recombinase [Acinetobacter sp. ADP1]
 gi|49529519|emb|CAG67231.1| site-specific tyrosine recombinase [Acinetobacter sp. ADP1]
          Length = 305

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 54/299 (18%), Positives = 104/299 (34%), Gaps = 20/299 (6%)

Query: 57  KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR--KSGDFDYRKI 114
           K+  I +P   P    +L   +R      S++ ++R ++ S   Q  +        +   
Sbjct: 4   KKPRIPAPVTIPEQFSFL-QGFRDYLVAQSVSPHTRNAYLSDLIQCAQLVVVPLPQWSSE 62

Query: 115 TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
           T   +   +     +P S  + L+++R  FK+   Q+    NP    + PK      +  
Sbjct: 63  TISDVLIELTKTGKSPRSIARSLSALRQFFKFLREQKIRDDNPVALHKSPKLGRTLPKDL 122

Query: 175 TKEDMQQFKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKT 229
           +++D++            G + R   E L   GLR S+     ++ +      ++ T K 
Sbjct: 123 SEQDVEALIHAPDTNTALGLRDRAMLEVLYACGLRVSELLNLRLELINLKQGYLRITGKG 182

Query: 230 GTIITVELPDGFMKLLAMT---------PIGKETFFINNDKQKMNATQFSIWFKAKATKA 280
                V L       +                +  F+      M+   F    K  A +A
Sbjct: 183 NKERLVPLGQMATDWIERYLVESRPQLYKSHTDYLFLTQHGGIMSRQNFWYAIKRYALQA 242

Query: 281 GV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
            +    S H +R   AT   + GA    +    G   +   + YT  A +IR+   + +
Sbjct: 243 NILPEMSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVA-QIRMQQLHEK 300


>gi|195562187|gb|ACG50169.1| putative integrase [Escherichia coli]
          Length = 329

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 54/315 (17%), Positives = 112/315 (35%), Gaps = 30/315 (9%)

Query: 24  YFRKGHGRRIRLPYPHES--TFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKS 81
           Y+ K  G   +L     +      AY   + G           RK   T   L  ++  S
Sbjct: 23  YYWKPGGTTEKLAPADSTKAEVWVAYEKVIEG-----------RKNILTFSQLWKKFLNS 71

Query: 82  AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-KHTPSSAIQFLTSM 140
             +  LA  ++  + ++   ++   G+ + + I  +H+R  +++R K +   A    +SM
Sbjct: 72  TDYADLAPRTQKDYLAHEKYLLAVFGEAEAKSIKPEHVRRYMDARGKKSRVQANHEHSSM 131

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP-RLAFEFL 199
             +++W  ++ +V  NPC+ V++   K +  R  T E+   + + +   + P + A E  
Sbjct: 132 SRVYRWGYQRGFVPGNPCVGVDK-YPKPQRDRYITDEE---YLAIYDCATDPVKAAMEIA 187

Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL--LAMTPIGKETFFI 257
                R SD  +     + +    I+  KTG        D       L            
Sbjct: 188 YLCAARVSDVLKMDWNQIMDKGIFIQQGKTGVKQIKAWTDRLHSAVNLCRKSGEDGAVIK 247

Query: 258 NNDKQKMNATQFSIWFKAKATKAG------VNKSAHGVRKFSATISADAGATAHELMATY 311
               ++ +   F+  ++     A       ++ + H + K       +   +  +     
Sbjct: 248 TMYGERYSYKGFNEAWRKARNAAAEKIGRPLDCTFHDL-KAKGISDYE--GSGRDKQKFS 304

Query: 312 GWKTVDQAETYTKGA 326
           G KT  Q   Y +  
Sbjct: 305 GHKTESQVLVYDRKV 319


>gi|91785030|ref|YP_560236.1| site-specific tyrosine recombinase XerD [Burkholderia xenovorans
           LB400]
 gi|91688984|gb|ABE32184.1| Putative phage integrase/recombinase family protein [Burkholderia
           xenovorans LB400]
          Length = 311

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 48/287 (16%), Positives = 88/287 (30%), Gaps = 25/287 (8%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG--- 122
               ++               L+ N+  ++                  + T         
Sbjct: 18  ASSASIDAFCDALWLE---HGLSRNTLDAYRRDLRLFCEWLAQSRNASLDTASEADLNAY 74

Query: 123 -VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
               +K   +SA + L+  R  + WAVR+    ++P + +   K+        T+  ++ 
Sbjct: 75  SAARQKDKSTSANRRLSVFRRYYGWAVREHRAKVDPTVRIRSAKQPPRFPSTLTEAQVEA 134

Query: 182 FKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-- 235
                      G + R   E +  SGLR ++        +  N   ++    G+   +  
Sbjct: 135 LLGAPDVDTPLGLRDRTMLELMYASGLRVTELVTLKTVEVGLNEGVVRVMGKGSKERLIP 194

Query: 236 -------ELPDGFMKLLAMT--PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284
                   +     +           +  F+    + M   QF    K  A  AGVN   
Sbjct: 195 FGEEAHGWIERYLREARPALLGARATDALFVTGRAEGMTRQQFWNIIKRHAAAAGVNAPL 254

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           S H +R   AT   + GA    +    G   +   + YT  A R RL
Sbjct: 255 SPHTLRHAFATHLLNHGADLRVVQLLLGHTDISTTQIYTHVA-RERL 300


>gi|197285863|ref|YP_002151735.1| tyrosine recombinase [Proteus mirabilis HI4320]
 gi|227356364|ref|ZP_03840752.1| tyrosine recombinase [Proteus mirabilis ATCC 29906]
 gi|34222762|sp|O31206|XERD_PROMI RecName: Full=Tyrosine recombinase xerD
 gi|2645800|gb|AAB87499.1| site-specific recombinase [Proteus mirabilis]
 gi|194683350|emb|CAR44057.1| tyrosine recombinase [Proteus mirabilis HI4320]
 gi|227163474|gb|EEI48395.1| tyrosine recombinase [Proteus mirabilis ATCC 29906]
          Length = 313

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 46/278 (16%), Positives = 96/278 (34%), Gaps = 26/278 (9%)

Query: 74  LISEYRKSAHW--GSLAVNSRISFESYFDQIIR-----KSGDFDYRKITTKHIRSGVESR 126
           +I ++  S  W    L+ N+  ++      + +     K        +      +     
Sbjct: 22  IIEQFLDSI-WLEQGLSANTLSAYRLDLQALSQWLVTQKLNWLSVTTLDLHAFLATRLDE 80

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185
            +  +SA + L+++R  F++  R++    +P   +  PK      +  +++ ++   S  
Sbjct: 81  GYKATSAARLLSTLRRFFQYLYREKLRQDDPSALLSTPKLPKRLPKDLSEQQVENLLSAP 140

Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVEL---- 237
                   + +   E L   GLR S+     +  +      ++   K      V L    
Sbjct: 141 CIDEPIELRDKAMLEVLYACGLRVSELVGLSLSDISLRQGVLRVIGKGDKERLVPLGEEA 200

Query: 238 ---PDGFMKLLAMTPIGKET---FFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288
               + +++      +  +T    F +   QKM    F    K  A  AG++    S H 
Sbjct: 201 IYWLEQYLQYGRPALMQGKTDDIVFPSLRGQKMTRQTFWHRIKHYAVIAGIDSEKLSPHV 260

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           +R   AT   + GA    +    G   +   + YT  A
Sbjct: 261 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA 298


>gi|71064633|ref|YP_263360.1| phage integrase [Psychrobacter arcticus 273-4]
 gi|71037618|gb|AAZ17926.1| probable phage integrase [Psychrobacter arcticus 273-4]
          Length = 312

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 50/277 (18%), Positives = 94/277 (33%), Gaps = 24/277 (8%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR---SGVESRKHT 129
             ++E+R++     LA  +R ++     +    +      +   + +    S +     T
Sbjct: 22  AYMTEFRQAMLARGLATRTRNAYVRDL-RSCELTNHAALTRWQPEDVLCCLSILTQDGKT 80

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-- 187
           P +  + L+S+R  + W +       NPC  ++ PK      +   + D+    +     
Sbjct: 81  PRTQARMLSSLRQFYLWMIASNLREDNPCERIKSPKLGRPLPKDLAEADVDNLLAAPDSS 140

Query: 188 --EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVEL----PDG 240
              G + +   E L   GLR S+     ++ +  N   ++ T K      V L     D 
Sbjct: 141 TALGLRDKAMLEVLYACGLRVSELVNLSLEQVNLNSGWLQITGKGNKTRLVPLGEYASDA 200

Query: 241 FMKLL---------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289
               L          +     +  F+      M    F    K  A  A ++K  S H +
Sbjct: 201 LEDYLTHGRGDLIAHLKAGNCQAVFLTAQGGYMTRQNFWYLLKKYAKVASIDKALSPHTL 260

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           R   AT   + GA    +    G   +   + YT  A
Sbjct: 261 RHAFATHLLNHGADLRSVQLLLGHSNLSTTQIYTHVA 297


>gi|307730818|ref|YP_003908042.1| tyrosine recombinase XerD [Burkholderia sp. CCGE1003]
 gi|307585353|gb|ADN58751.1| tyrosine recombinase XerD [Burkholderia sp. CCGE1003]
          Length = 314

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 49/287 (17%), Positives = 89/287 (31%), Gaps = 25/287 (8%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE- 124
               +L               L+ N+  ++                  + T         
Sbjct: 21  ASSASLDAFCDALWLE---HGLSRNTLDAYRRDLRLFSEWLAQSRNASLDTASEADLNAY 77

Query: 125 ---SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
               +K   +SA + L+  R  + WAVR+    ++P L +   K+        ++  ++ 
Sbjct: 78  SAVRQKDKSTSANRRLSVFRRYYGWAVREHRAQVDPTLRIRSAKQPPRFPSTLSEAQVEA 137

Query: 182 FKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVE 236
                      G + R   E +  SGLR ++        +  N   ++    G+    + 
Sbjct: 138 LLGAPDIDTPLGLRDRTMLELMYASGLRVTELVTLKTVEVGLNEGVVRVMGKGSKERLIP 197

Query: 237 LPDGFMKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284
             +     +                 +  F+ N  + M   QF    K  A  AGV+   
Sbjct: 198 FGEEAHGWIERYLRDARPALLGARAADALFVTNRAEGMTRQQFWNIIKRHAAAAGVHAPL 257

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           S H +R   AT   + GA    +    G   +   + YT  A R RL
Sbjct: 258 SPHTLRHAFATHLLNHGADLRVVQLLLGHTDISTTQIYTHVA-RERL 303


>gi|254000090|ref|YP_003052153.1| tyrosine recombinase XerD [Methylovorus sp. SIP3-4]
 gi|253986769|gb|ACT51626.1| tyrosine recombinase XerD [Methylovorus sp. SIP3-4]
          Length = 298

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 49/268 (18%), Positives = 93/268 (34%), Gaps = 23/268 (8%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK-----HTPSSAIQFLTSM 140
            LA N+  S+                + +         +          P S  + + S+
Sbjct: 21  GLARNTLESYRRDLALFADWLWSEHAKLLNQADQGDLQQYLAFRFPTSKPRSVSRLIASL 80

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLAF 196
           R  +++ +R+  V+++P L ++ PK      +   ++++    +        G + R   
Sbjct: 81  RRFYRYGLREGQVSVDPTLLIDTPKLPRSLPKSLNEDEVVALLNAPDIAQAIGLRDRAML 140

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-VELPDGFMKLLAMTPIGK--- 252
           E L   GLR S+        +  N   ++    G+    V L +  +  L          
Sbjct: 141 ETLYACGLRVSELVGLRYTEVSLNEGVVRVTGKGSKTRLVPLGEESVDWLLRYVREGRPQ 200

Query: 253 -------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGAT 303
                  ++ F+    + M    F    K  A +AG++K  S H +R   AT   + GA 
Sbjct: 201 ILQQRVSDSLFVTQRGEAMTRQAFWYLIKRYALQAGIHKPLSPHVLRHAFATHLLNHGAD 260

Query: 304 AHELMATYGWKTVDQAETYTKGADRIRL 331
              +    G   +   + YT  A R RL
Sbjct: 261 LRVVQMLLGHSDISTTQIYTHVA-RERL 287


>gi|188534907|ref|YP_001908704.1| Tyrosine recombinase XerD [Erwinia tasmaniensis Et1/99]
 gi|188029949|emb|CAO97833.1| Tyrosine recombinase XerD [Erwinia tasmaniensis Et1/99]
          Length = 297

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 49/284 (17%), Positives = 102/284 (35%), Gaps = 27/284 (9%)

Query: 73  WLISEYRKSAHW--GSLAVNSRISFESYFDQIIR-----KSGDFDYRKITTKHIRSGVES 125
            LI ++   A W   +LA N+  S+      +            + + I  +   +    
Sbjct: 5   DLIEQFL-DALWIERNLAQNTVASYRLDLRSLCDWLACQPLSLLNAQAIDLRAFLAQRLE 63

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS- 184
             +  SS+ + L++MR LF++  R++    +P   +  PK      +  ++  +++    
Sbjct: 64  GGYKASSSARLLSAMRRLFQYLYREKLREDDPSALLSSPKLPQRLPKDLSEAQVERLLQS 123

Query: 185 ---FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240
                    + +   E L  +GLR ++     +  +      ++   K      V + + 
Sbjct: 124 PCLEQPIELRDKAMLELLYATGLRVTELVGLTLSDISLRQGVVRVLGKGNKERLVPMGEE 183

Query: 241 FMKLLAMTPIGKETFFIN----------NDKQKMNATQFSIWFKAKATKAGVN---KSAH 287
            +  +         + +N          N  ++M    F    K  AT AG++    S H
Sbjct: 184 AVHWIEQFIEYGRPWLLNGQTLDVLFPSNRAKQMTRQTFWHRIKHYATLAGIDSDKLSPH 243

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIR 330
            +R   AT   + GA    +    G   +   + YT  A +R+R
Sbjct: 244 VLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLR 287


>gi|187925186|ref|YP_001896828.1| site-specific tyrosine recombinase XerD [Burkholderia phytofirmans
           PsJN]
 gi|187716380|gb|ACD17604.1| tyrosine recombinase XerD [Burkholderia phytofirmans PsJN]
          Length = 311

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 48/287 (16%), Positives = 89/287 (31%), Gaps = 25/287 (8%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG--- 122
               ++               L+ N+  ++                  + T         
Sbjct: 18  ASSASIDAFCDALWLE---HGLSRNTLDAYRRDLRLFCEWLAQSRNASLDTASEADLNAY 74

Query: 123 -VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
               RK   +SA + L+  R  + WAVR+    ++P + +   K+        ++  ++ 
Sbjct: 75  SAARRKDKSTSANRRLSVFRRYYGWAVREHRTKVDPTVRIRSAKQPPRFPSTLSEAQVEA 134

Query: 182 FKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVE 236
                      G + R   E +  SGLR ++        +  N   ++    G+    + 
Sbjct: 135 LLGAPDINTALGLRDRTMLELMYASGLRVTELVTLKTVEVGLNEGVVRVMGKGSKERLIP 194

Query: 237 LPDGFMKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284
             +     +                 +  F+ N  + M   QF    K  A  AGV+   
Sbjct: 195 FGEEAHSWIERYLREARPALLGARATDALFVTNRAEGMTRQQFWNIIKRHAVVAGVHAPL 254

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           S H +R   AT   + GA    +    G   +   + YT  A R RL
Sbjct: 255 SPHTLRHAFATHLLNHGADLRVVQLLLGHTDISTTQIYTHVA-RERL 300


>gi|322515725|ref|ZP_08068691.1| tyrosine recombinase XerD [Actinobacillus ureae ATCC 25976]
 gi|322118197|gb|EFX90503.1| tyrosine recombinase XerD [Actinobacillus ureae ATCC 25976]
          Length = 297

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 44/285 (15%), Positives = 96/285 (33%), Gaps = 24/285 (8%)

Query: 70  TLKWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVE 124
           +L  +I ++  +      L+ N+  S+    ++                   +       
Sbjct: 3   SLDPIIEQFLDTLWQEHGLSENTSASYRLDLERFSEWLPTPKAFLTLDHFDLQSFLGERL 62

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----Q 180
            + +  +S+ + L+ +R  F++   + Y   +P L++  P++ T   +  ++E +     
Sbjct: 63  EQGYKATSSARMLSCLRKFFRFLYIENYRQDDPTLTLISPRKPTNLPKSLSEEQVMDLLD 122

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPD 239
              +      + +   E L  +GLR ++       +L      ++   K      V + +
Sbjct: 123 CPNTLDPVELRDKAMLELLYATGLRVTELVSLTTDNLNLRQGVMRIVGKGNKERLVPIGE 182

Query: 240 GFMKLLAMTPIGKETFFINN----------DKQKMNATQFSIWFKAKATKAGVN---KSA 286
                +           +NN             +M    F    K  A  AG++    S 
Sbjct: 183 EASYWIQEFFQYGRAILLNNIQSDVVFPSRRGLQMTRQTFWHRIKHYAVLAGIDSEKLSP 242

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           H +R   AT   + GA    +    G   +   + YT  A + RL
Sbjct: 243 HVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVA-KARL 286


>gi|239996020|ref|ZP_04716544.1| tyrosine recombinase [Alteromonas macleodii ATCC 27126]
          Length = 308

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 47/286 (16%), Positives = 104/286 (36%), Gaps = 31/286 (10%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKI------TTKHIRSGVESRKHTPSSAIQFLT 138
             L+ +++ S+ +   ++   S +   + I        +   +    +  +  S  + L+
Sbjct: 30  KGLSDHTQQSYRTDLTKLAIFSNNQGVKDIAVLTTEQLQDYLAYRHDKGLSTRSTQRALS 89

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ----QFKSFWSEGSQPRL 194
           ++R  F + + ++    +P  ++  PK         +++ ++       +      + + 
Sbjct: 90  AIRAFFVFLISKQVRVDSPVSALSNPKTPKALPSSLSEQQVEDLLNAPLTDDPIECRDKS 149

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFMKLLA-----MT 248
             E L  +GLR S+     +  +      ++    G     V L +  ++ L        
Sbjct: 150 MLEVLYATGLRVSELIGLTMDQISLQQGVVRVVGKGNKERLVPLGEDAIEWLLTYIKTAR 209

Query: 249 PI----GKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGA 302
           PI      +  F++   QKM    F    K  A KAG+  + S H +R   AT   + GA
Sbjct: 210 PILASKASDVVFLSKRGQKMTRQTFWHRIKYYAVKAGIEQHLSPHTLRHAFATHLLNHGA 269

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
               +    G   +   + YT  A         + R+ +++ S  P
Sbjct: 270 DLRVVQMLLGHSDLSTTQIYTHVA---------TERLQTLIHSHHP 306


>gi|258620859|ref|ZP_05715893.1| Tyrosine recombinase xerD [Vibrio mimicus VM573]
 gi|258586247|gb|EEW10962.1| Tyrosine recombinase xerD [Vibrio mimicus VM573]
          Length = 302

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 47/280 (16%), Positives = 107/280 (38%), Gaps = 26/280 (9%)

Query: 72  KWLISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVE 124
           + L+ ++   A W    LA N+  S+ +   +++       Y+         +  ++ + 
Sbjct: 9   QGLVEQFL-DAMWLERGLAENTVASYRNDLSKLLEWMAQHQYQLDFISFSGLQEYQNWLS 67

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
            + + P+S  + L+++R LF++  R++  A +P   +  PK  T   +  T+  ++   S
Sbjct: 68  EQNYKPTSKARMLSAIRRLFQYLHREKVRADDPSALLISPKLPTRLPKDLTEAQVEALLS 127

Query: 185 F----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPD 239
                     + +   E L  +GLR ++     ++++      ++   K G    V + +
Sbjct: 128 APDPQTPIELRDKAMLELLYATGLRVTELVSLTMENMSLRQGVVRVIGKGGKERLVPMGE 187

Query: 240 GFMKLLAMTPIGKETFFI----------NNDKQKMNATQFSIWFKAKATKAGVN---KSA 286
             ++ +        +  +          ++  Q+M    F    K  A  A ++    S 
Sbjct: 188 NAIEWIETFLQQGRSLLLGEQTSDIVFPSSRGQQMTRQTFWHRIKHYAVIAEIDVELLSP 247

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           H +R   AT   + GA    +    G   +   + YT  A
Sbjct: 248 HVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVA 287


>gi|281421506|ref|ZP_06252505.1| integrase/recombinase XerD [Prevotella copri DSM 18205]
 gi|281404578|gb|EFB35258.1| integrase/recombinase XerD [Prevotella copri DSM 18205]
          Length = 318

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 49/290 (16%), Positives = 106/290 (36%), Gaps = 25/290 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDY--RKITTKHIR---SGVESRK 127
           +I  Y +      + + N+  ++    + ++  +   +    ++  + +    + +  R 
Sbjct: 5   IIKNYMRYLKLGRNFSKNTLDAYYHDLNFLLEYADKNNLVLTEMKLEDLENFSASLHDRG 64

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            +  S  + L+ +R  +++ V  +Y+  +P   +  P+         + E++   ++   
Sbjct: 65  VSARSQARILSGIRSFYRYLVLDDYIKDDPTELLVSPQIGKHLPEYLSVEEVDMLEAAID 124

Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFM 242
               EG + +   E L   GLR S+        +      I+   K      V +    +
Sbjct: 125 LEKWEGQRNKAIIEILFSCGLRVSELVNLKKSDVFEEEKFIRVIGKGNKERIVPISGKAL 184

Query: 243 K----------LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290
           K          L+ + P  ++  F+N     +      I  K  A  AG+ K  S H +R
Sbjct: 185 KEINLWYIDRNLMTIKPGEEDYVFLNRRGAHLTRNMILIMIKNAAYDAGIKKTISPHTLR 244

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK--GADRIRLGIKNSRR 338
              AT     GA    + A  G + +   E YT    +D  R  +++  R
Sbjct: 245 HSFATALLKGGADLRVIQALLGHEDIGTTEIYTHLETSDLRRAILEHHPR 294


>gi|83590344|ref|YP_430353.1| tyrosine recombinase XerD subunit [Moorella thermoacetica ATCC
           39073]
 gi|83573258|gb|ABC19810.1| tyrosine recombinase XerD subunit [Moorella thermoacetica ATCC
           39073]
          Length = 295

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 44/265 (16%), Positives = 100/265 (37%), Gaps = 27/265 (10%)

Query: 85  GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLT 138
             LA N+  S+ S   Q +     +G    R +T   + + +        +P++  Q L 
Sbjct: 16  RGLAENTLASYNSDLQQFLLYLEGAGVKSPRDVTRGLLVAYLVKMQQDGRSPATISQHLA 75

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KSFWSEGSQPRL 194
           +++  + + +R+  V  +P   +E P++  +  +  T  ++++     ++    G + + 
Sbjct: 76  ALKSFYHFLLRERLVESDPTADLESPRQSKKLPQVLTVAEVEKLLNQPRTDTPAGLRDKA 135

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-------------ITVELPDGF 241
             E L  +GLR S+     V  +      ++    G+              +   + +G 
Sbjct: 136 MLELLYATGLRVSELVSLNVDQVNLEGEFVRCLGKGSKERVVPMGQVACFYVRTYIENGR 195

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
            KL+      +   F+N+  ++++        K     A + K  + H +R   AT   +
Sbjct: 196 GKLIKRAT--EPALFVNHHGRRLSRQGCWKILKGYVRAANLKKDITPHTLRHSFATHLLE 253

Query: 300 AGATAHELMATYGWKTVDQAETYTK 324
            GA    +    G   +   + YT 
Sbjct: 254 NGADLRSVQELLGHADIGTTQIYTH 278


>gi|127511704|ref|YP_001092901.1| tyrosine recombinase XerD [Shewanella loihica PV-4]
 gi|126636999|gb|ABO22642.1| tyrosine recombinase XerD [Shewanella loihica PV-4]
          Length = 303

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 51/283 (18%), Positives = 102/283 (36%), Gaps = 24/283 (8%)

Query: 74  LISEYRKSA-HWGSLAVNSRISFES---YFDQIIRKSGD--FDYRKITTKHIRSGVESRK 127
           LI  +         L+ ++  ++ S   +FD+ + K G       +   +   +      
Sbjct: 13  LIEPFLDDLWAAKGLSDHTLQAYRSDLSHFDRYLNKQGSSLLSTSQAEVRDYLALRVEHG 72

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-- 185
              +S+ + L+S+R  +K+ + ++ + ++P   ++ PK   +     ++ D+ +  S   
Sbjct: 73  FAKTSSARLLSSLRRFYKYLLAKKLIEVDPMAMIKPPKLARKLPDALSEADVDRLLSEPN 132

Query: 186 --WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVE------ 236
                 ++ R   E L  SGLR S+     +  +      ++   K      V       
Sbjct: 133 REDPVEARDRAMLELLYASGLRVSELVGLTLDQMSLRQGVVRIVGKGSKERLVPFGEQAG 192

Query: 237 --LPDGFMKLLAMTPIGK--ETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVR 290
             + D           GK  +  F +     M    F    K  A +AG+  + S H +R
Sbjct: 193 AEIEDYLKAARFELLKGKASDVVFPSKRGNMMTRQTFWHRIKLYAQRAGIAVHLSPHTLR 252

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
              AT   + GA    +    G   +   + YT  A + RL  
Sbjct: 253 HAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVA-KARLAQ 294


>gi|323527182|ref|YP_004229335.1| tyrosine recombinase XerD [Burkholderia sp. CCGE1001]
 gi|323384184|gb|ADX56275.1| tyrosine recombinase XerD [Burkholderia sp. CCGE1001]
          Length = 314

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 45/304 (14%), Positives = 91/304 (29%), Gaps = 24/304 (7%)

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK 113
           ++ +  +         ++               L+ N+  ++                  
Sbjct: 9   ASAQLSHSPLFTASSASIDAFCDALWLE---HGLSRNTLDAYRRDLRLFSEWLAQTRSAS 65

Query: 114 ITTKHIRSG----VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
           + T             +K   +SA + L+  R  + WAVR+    ++P L +   K+   
Sbjct: 66  LDTASEADLNAYSAARQKDKSTSANRRLSVFRRYYGWAVREHRAKVDPTLRIRSAKQPPR 125

Query: 170 GIRPWTKEDMQQFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225
                ++  ++            G + R   E +  SGLR ++        +  N   ++
Sbjct: 126 FPSTLSEAQVEALLGAPDIETPLGLRDRTMLELMYASGLRVTELVTLKTVEVGLNEGVVR 185

Query: 226 TQKTGT-IITVELPDGFMKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFK 274
               G+    +   +     +                 +  F+ N  + M   QF    K
Sbjct: 186 VMGKGSKERLIPFGEEAHGWIERYLRDARPALLGARAADALFVTNRAEGMTRQQFWNIIK 245

Query: 275 AKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
             A  AGV+   S H +R   AT   + GA    +    G   +   + YT  A      
Sbjct: 246 RHAAAAGVHAPLSPHTLRHAFATHLLNHGADLRVVQLLLGHTDISTTQIYTHVARERLKS 305

Query: 333 IKNS 336
           +   
Sbjct: 306 LHAM 309


>gi|298505931|gb|ADI84654.1| integrase/recombinase XerD [Geobacter sulfurreducens KN400]
          Length = 295

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 46/263 (17%), Positives = 94/263 (35%), Gaps = 22/263 (8%)

Query: 89  VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT---PSSAIQFLTSMRVLFK 145
            +       Y   + + +G  D   I   H+   +   K +     S  + L+++R+  +
Sbjct: 24  ESYARDLSRYLGYVEQHAG-GDPAAIRPLHVADFLAHLKESGLGARSRARALSAVRMFHR 82

Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFEFLLY 201
           + + + Y   NP   +E P+   +  +  T  +++   +          + R   E L  
Sbjct: 83  FLLVEGYAETNPTSIIEAPRVLAKLPQVLTGREVEMLLAAPAGDAPIEVRDRAMLELLYA 142

Query: 202 SGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGFMKLLAMTPIGKET------ 254
           +GLR S+      + +  +   +    K      V + +     + +      T      
Sbjct: 143 TGLRVSELVGLRTRDVNTSAGYLMTVGKGEKERLVPMGESACAAVVLYLSSARTQLGRGG 202

Query: 255 ----FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELM 308
                F++   ++M    F    K ++ +AG+ K  S H +R   AT   + GA    + 
Sbjct: 203 ESPFLFLSRLGERMTRQAFWNIIKKRSRQAGILKGISPHTLRHSFATHLLENGADLRSVQ 262

Query: 309 ATYGWKTVDQAETYTKGADRIRL 331
           A  G   +   + YT    R RL
Sbjct: 263 AMLGHADLSTTQIYTH-VTRERL 284


>gi|262166461|ref|ZP_06034198.1| tyrosine recombinase XerD [Vibrio mimicus VM223]
 gi|262170635|ref|ZP_06038313.1| tyrosine recombinase XerD [Vibrio mimicus MB-451]
 gi|261891711|gb|EEY37697.1| tyrosine recombinase XerD [Vibrio mimicus MB-451]
 gi|262026177|gb|EEY44845.1| tyrosine recombinase XerD [Vibrio mimicus VM223]
          Length = 302

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 49/280 (17%), Positives = 107/280 (38%), Gaps = 26/280 (9%)

Query: 72  KWLISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVE 124
           + L+ ++   A W    LA N+  S+ +   +++       YR         +  +S + 
Sbjct: 9   QGLVEQFL-DAMWLERGLAENTVASYRNDLSKLLEWMAQHQYRLDFISFSGLQEYQSWLS 67

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
            + + P+S  + L+++R LF++  R++  A +P   +  PK  T   +  T+  ++   S
Sbjct: 68  EQNYKPTSKARMLSAIRRLFQYLHREKVRADDPSALLISPKLPTRLPKDLTEAQVEALLS 127

Query: 185 F----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPD 239
                     + +   E L  +GLR ++     ++++      ++   K G    V + +
Sbjct: 128 APDPQTPIELRDKAMLELLYATGLRVTELVSLTMENMSLRQGVVRVIGKGGKERLVPMGE 187

Query: 240 GFMKLLAMTPIGKETFFI----------NNDKQKMNATQFSIWFKAKATKAGVN---KSA 286
             ++ +        +  +          ++  Q+M    F    K  A  A ++    S 
Sbjct: 188 NAIEWIETFLQQGRSLLLGEQTSDIVFPSSRGQQMTRQTFWHRIKHYAVIAEIDVELLSP 247

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           H +R   AT   + GA    +    G   +   + YT  A
Sbjct: 248 HVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVA 287


>gi|78222639|ref|YP_384386.1| tyrosine recombinase XerD subunit [Geobacter metallireducens GS-15]
 gi|78193894|gb|ABB31661.1| tyrosine recombinase XerD subunit [Geobacter metallireducens GS-15]
          Length = 295

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 50/270 (18%), Positives = 94/270 (34%), Gaps = 24/270 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFD---YRKITTKHIRSGVESRKH---TPSSAIQFLT 138
             LA NS  S+     + +      +      +    +   +   K     P S  + L+
Sbjct: 16  KGLAKNSLDSYGRDMIRYLDFLEKRNCGEPSAVRPVDVADFLAHLKDCGLAPRSRARALS 75

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRL 194
           ++R+  ++ + + Y   NP   +E PK   +  +     +++   +     S    + R 
Sbjct: 76  AVRMFHRFLLVEGYAEANPTAIIEAPKTLAKLPQILAGREVEALLAAPGSDSAQDMRDRA 135

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPI--- 250
             E L  +GLR S+    G++ +      +    K G    V + +     ++       
Sbjct: 136 MLELLYATGLRVSELVGLGLRDVNVTAGYLMAFGKGGKERLVPMGESACAAVSRYLAEAR 195

Query: 251 -------GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301
                       F+     +M    F    K +A +AG+ K  S H +R   AT   + G
Sbjct: 196 PEMDRNGDNAYLFLTRLGDRMTRQAFWNIIKKRAIEAGIRKTISPHTLRHSFATHLLENG 255

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRL 331
           A    + A  G   +   + YT    R RL
Sbjct: 256 ADLRSVQAMLGHADLATTQIYTH-VTRERL 284


>gi|123443576|ref|YP_001007549.1| site-specific tyrosine recombinase XerD [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|122090537|emb|CAL13406.1| integrase/recombinase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 299

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 54/284 (19%), Positives = 108/284 (38%), Gaps = 27/284 (9%)

Query: 74  LISEYRKSAHW--GSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVESR--- 126
           LI ++   A W   +LA N+  S+      +    +  D D  +  ++ ++S +  R   
Sbjct: 8   LIEQFL-DALWLERNLAENTLASYRLDLHALSGWLEHHDSDLLRAGSQDLQSFLAERIEG 66

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185
            +  +S+ + L++MR LF++  R++    +P   +  PK      +  ++  ++   +  
Sbjct: 67  GYKATSSARLLSAMRRLFQYLYREKLREDDPTALLSSPKLPQRLPKDLSEAQVEALLNSP 126

Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241
                   + +   E L  +GLR S+     +  +      ++   K      V L +  
Sbjct: 127 NVDIPLELRDKAMLEVLYATGLRVSELVGLTISDVSLRQGVVRVIGKGNKERLVPLGEEA 186

Query: 242 MKLLAMTPIGKETFFIN----------NDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288
           +  +         + IN          N  Q+M    F    K  A  AG++    S H 
Sbjct: 187 VYWIENYMEHGRPWLINGQSLDVLFPSNRSQQMTRQTFWHRIKHYAILAGIDSERLSPHV 246

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRL 331
           +R   AT   + GA    +    G   +   + YT  A +R++L
Sbjct: 247 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKL 290


>gi|114566153|ref|YP_753307.1| recombinase [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
 gi|114337088|gb|ABI67936.1| tyrosine recombinase XerD subunit [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
          Length = 296

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 49/275 (17%), Positives = 99/275 (36%), Gaps = 25/275 (9%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQI-------IRKSGDFDYRKITTKHIRSGVESR 126
           I ++    ++   LA NSRI+++    +         R     +  K       +    +
Sbjct: 5   IEDFISYLNFEKGLAANSRIAYKRDLLKFQQFLQENSRALSPQNISKHDIMAFLAWQLDQ 64

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS-- 184
               SS  + L+S++  +K+ + +  +  NP   +E PK K +  +  + E++ +     
Sbjct: 65  GAAHSSIARSLSSIKSYYKFLILEGELDKNPSSDLETPKIKRKLPQVLSIEEVDKLMEQP 124

Query: 185 --FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELP--- 238
                 G + R   E +  +G+R S+     V+ L      ++    G     + +    
Sbjct: 125 NPVVPLGIRDRAMLELMYGTGIRVSELLSLQVEDLNPTAGFLRCMGKGRKERIIPVNQTS 184

Query: 239 -DGFMKLLAMTPIG------KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289
            D   + LA           + T F+N   + ++   F         KA + K  + H +
Sbjct: 185 IDWVQRYLARVRNSLVKNPLERTLFLNARGRPLSRQGFFKILGNYVEKAELEKEVTPHTL 244

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           R   AT   + GA    +    G   +   + YT 
Sbjct: 245 RHSFATHLLENGADLRAVQEMLGHADISTTQIYTH 279


>gi|88803246|ref|ZP_01118772.1| putative tyrosine recombinase [Polaribacter irgensii 23-P]
 gi|88780812|gb|EAR11991.1| putative tyrosine recombinase [Polaribacter irgensii 23-P]
          Length = 298

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 52/279 (18%), Positives = 100/279 (35%), Gaps = 25/279 (8%)

Query: 71  LKWLISEYRKSAH-WGSLAVNSRISFESYFDQII----RKSGDFDYRKITTKHIRSGVE- 124
            K  I EY+        L+ N+  S+    +++     +         I +  I+  +  
Sbjct: 3   WKHAIKEYQMYLKIERGLSKNTVDSYTKDIEKLCLFFCKNKITISPININSDLIKQFIYD 62

Query: 125 -SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
            +++  P S  + ++ +R  F + + +EY  +NP   +E PK   +     +++D+    
Sbjct: 63  IAKQINPRSQARIISGLRSFFDYLIFEEYRVLNPTDLLETPKIGKKLPDTLSQDDIDALF 122

Query: 184 SF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELP 238
           S       +G + R   E +   GLR S+     V  L      I+   K      V + 
Sbjct: 123 SAIDLSHPQGERNRTLLETMYSCGLRVSELITLKVSDLFFEEGFIRVLGKGNKERYVPIH 182

Query: 239 DGFMKLLAMTPIG-----------KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--S 285
                 +++               ++T F+N   + +      I  K  A K  + K  S
Sbjct: 183 KDAESYISIYKRTIRTHIEPKKGFEDTLFLNRRGKGLTRQMIFIILKDLAFKIDLKKKIS 242

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            H +R   AT     GA    +    G +++   E Y  
Sbjct: 243 PHTLRHSFATHLLQNGADLRVIQQILGHESITTTEIYVH 281


>gi|257877980|ref|ZP_05657633.1| phage integrase [Enterococcus faecium 1,230,933]
 gi|257881234|ref|ZP_05660887.1| phage integrase [Enterococcus faecium 1,231,502]
 gi|257884899|ref|ZP_05664552.1| phage integrase [Enterococcus faecium 1,231,501]
 gi|257889821|ref|ZP_05669474.1| phage integrase [Enterococcus faecium 1,231,410]
 gi|258616535|ref|ZP_05714305.1| integrase/recombinase XerD, putative [Enterococcus faecium DO]
 gi|260559031|ref|ZP_05831217.1| phage integrase [Enterococcus faecium C68]
 gi|261207565|ref|ZP_05922250.1| phage integrase [Enterococcus faecium TC 6]
 gi|289565077|ref|ZP_06445530.1| tyrosine recombinase XerD [Enterococcus faecium D344SRF]
 gi|293556722|ref|ZP_06675285.1| tyrosine recombinase XerD [Enterococcus faecium E1039]
 gi|293563380|ref|ZP_06677829.1| tyrosine recombinase XerD [Enterococcus faecium E1162]
 gi|293568038|ref|ZP_06679376.1| tyrosine recombinase XerD [Enterococcus faecium E1071]
 gi|294614864|ref|ZP_06694759.1| tyrosine recombinase XerD [Enterococcus faecium E1636]
 gi|294618694|ref|ZP_06698228.1| tyrosine recombinase XerD [Enterococcus faecium E1679]
 gi|294622985|ref|ZP_06701875.1| tyrosine recombinase XerD [Enterococcus faecium U0317]
 gi|257812208|gb|EEV40966.1| phage integrase [Enterococcus faecium 1,230,933]
 gi|257816892|gb|EEV44220.1| phage integrase [Enterococcus faecium 1,231,502]
 gi|257820737|gb|EEV47885.1| phage integrase [Enterococcus faecium 1,231,501]
 gi|257826181|gb|EEV52807.1| phage integrase [Enterococcus faecium 1,231,410]
 gi|260074788|gb|EEW63104.1| phage integrase [Enterococcus faecium C68]
 gi|260077948|gb|EEW65654.1| phage integrase [Enterococcus faecium TC 6]
 gi|289163084|gb|EFD10931.1| tyrosine recombinase XerD [Enterococcus faecium D344SRF]
 gi|291589259|gb|EFF21069.1| tyrosine recombinase XerD [Enterococcus faecium E1071]
 gi|291592326|gb|EFF23940.1| tyrosine recombinase XerD [Enterococcus faecium E1636]
 gi|291595077|gb|EFF26420.1| tyrosine recombinase XerD [Enterococcus faecium E1679]
 gi|291597613|gb|EFF28774.1| tyrosine recombinase XerD [Enterococcus faecium U0317]
 gi|291601054|gb|EFF31343.1| tyrosine recombinase XerD [Enterococcus faecium E1039]
 gi|291604641|gb|EFF34126.1| tyrosine recombinase XerD [Enterococcus faecium E1162]
          Length = 295

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 45/275 (16%), Positives = 103/275 (37%), Gaps = 26/275 (9%)

Query: 75  ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRK-------ITTKHIRSGVESR 126
           I++Y    +    L+ N+R S+E   +Q +    +            +  + +    E +
Sbjct: 5   INDYLHYLNIERGLSANTRQSYERDLEQYLHFLQEQKIASWQDVDRFLVIRFLEKLHEEK 64

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
           K T ++  + ++S+R   ++  ++     +P   ++ PK+  +     T  ++++     
Sbjct: 65  KAT-ATVTRMISSLRRFHQFLRQERITDHDPMQHIDTPKKAQKLPSTLTLTEVEKLIEAP 123

Query: 187 S----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241
                 G + R   E +  +G+R S+     +  L  ++  ++T  K      + L D  
Sbjct: 124 DTTKTLGIRDRAILEVMYATGMRVSELIGLKLGDLHLSLGLVQTVGKGDKERIIPLGDYA 183

Query: 242 MKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289
           ++ L                +   F+NN  + ++        K    +AG+ K  + H +
Sbjct: 184 IQWLERYLDEARPLLVKDASEMHVFVNNHGKGLSRQGIWKNLKQLVREAGIYKEVTPHTL 243

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           R   AT   + GA    +    G   +   + YT 
Sbjct: 244 RHSFATHLLENGADLRTVQELLGHADISTTQIYTH 278


>gi|314939481|ref|ZP_07846715.1| tyrosine recombinase XerD [Enterococcus faecium TX0133a04]
 gi|314941112|ref|ZP_07848010.1| tyrosine recombinase XerD [Enterococcus faecium TX0133C]
 gi|314948724|ref|ZP_07852096.1| tyrosine recombinase XerD [Enterococcus faecium TX0082]
 gi|314951697|ref|ZP_07854740.1| tyrosine recombinase XerD [Enterococcus faecium TX0133A]
 gi|314993956|ref|ZP_07859283.1| tyrosine recombinase XerD [Enterococcus faecium TX0133B]
 gi|314997520|ref|ZP_07862465.1| tyrosine recombinase XerD [Enterococcus faecium TX0133a01]
 gi|313588431|gb|EFR67276.1| tyrosine recombinase XerD [Enterococcus faecium TX0133a01]
 gi|313591558|gb|EFR70403.1| tyrosine recombinase XerD [Enterococcus faecium TX0133B]
 gi|313596161|gb|EFR75006.1| tyrosine recombinase XerD [Enterococcus faecium TX0133A]
 gi|313600113|gb|EFR78956.1| tyrosine recombinase XerD [Enterococcus faecium TX0133C]
 gi|313641283|gb|EFS05863.1| tyrosine recombinase XerD [Enterococcus faecium TX0133a04]
 gi|313644790|gb|EFS09370.1| tyrosine recombinase XerD [Enterococcus faecium TX0082]
          Length = 300

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 45/275 (16%), Positives = 103/275 (37%), Gaps = 26/275 (9%)

Query: 75  ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRK-------ITTKHIRSGVESR 126
           I++Y    +    L+ N+R S+E   +Q +    +            +  + +    E +
Sbjct: 10  INDYLHYLNIERGLSANTRQSYERDLEQYLHFLQEQKIASWQDVDRFLVIRFLEKLHEEK 69

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
           K T ++  + ++S+R   ++  ++     +P   ++ PK+  +     T  ++++     
Sbjct: 70  KAT-ATVTRMISSLRRFHQFLRQERITDHDPMQHIDTPKKAQKLPSTLTLTEVEKLIEAP 128

Query: 187 S----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241
                 G + R   E +  +G+R S+     +  L  ++  ++T  K      + L D  
Sbjct: 129 DTTKTLGIRDRAILEVMYATGMRVSELIGLKLGDLHLSLGLVQTVGKGDKERIIPLGDYA 188

Query: 242 MKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289
           ++ L                +   F+NN  + ++        K    +AG+ K  + H +
Sbjct: 189 IQWLERYLDEARPLLVKDASEMHVFVNNHGKGLSRQGIWKNLKQLVREAGIYKEVTPHTL 248

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           R   AT   + GA    +    G   +   + YT 
Sbjct: 249 RHSFATHLLENGADLRTVQELLGHADISTTQIYTH 283


>gi|325299547|ref|YP_004259464.1| Tyrosine recombinase xerC [Bacteroides salanitronis DSM 18170]
 gi|324319100|gb|ADY36991.1| Tyrosine recombinase xerC [Bacteroides salanitronis DSM 18170]
          Length = 316

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 61/305 (20%), Positives = 116/305 (38%), Gaps = 24/305 (7%)

Query: 56  PKREYINSPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRK-----SGDF 109
           P++       K+  T + ++ +YR+      SL+ N+  ++ +  D+++        G  
Sbjct: 2   PRKNSAQRYEKEMKTYEKILLKYRQYLKLERSLSGNTIDAYLTDLDKLLAYLTLEGIGIT 61

Query: 110 DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
           D      ++  +G+      P S  + L+ +R  F++    +Y+  +P   +E P+    
Sbjct: 62  DVTLQDLENFSAGLHDIGIHPRSQARILSGIRSFFRFLTLDDYIRQDPSELLESPQIGKH 121

Query: 170 GIRPWTKEDMQQF----KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225
                T E++            EG + R   E L   GLR S+ C   +  L  +   IK
Sbjct: 122 LPDVLTVEEIDALIGAIDETTPEGQRNRAILETLYSCGLRVSELCNLKLSDLYLDEGFIK 181

Query: 226 TQKTGTIIT-VELPDGFMKLLA----------MTPIGKETFFINNDKQKMNATQFSIWFK 274
            +  G+    V +    +  L           + P  ++  FI+   + ++        K
Sbjct: 182 VEGKGSKQRLVPISPRAVNELKNYFTERGYAKIKPGYEDFVFISRFGKNISRIMVFHIIK 241

Query: 275 AKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
             A + G+ K  S H  R   AT   + GA    + A  G +++   E YT   DR  L 
Sbjct: 242 ELAERIGLKKTISPHTFRHSFATHLLEGGANLRAIQAMLGHESIGTTEIYTH-IDRSMLR 300

Query: 333 IKNSR 337
            +   
Sbjct: 301 QEIIE 305


>gi|294648993|ref|ZP_06726441.1| site-specific tyrosine recombinase XerD [Acinetobacter haemolyticus
           ATCC 19194]
 gi|292825128|gb|EFF83883.1| site-specific tyrosine recombinase XerD [Acinetobacter haemolyticus
           ATCC 19194]
          Length = 333

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 55/299 (18%), Positives = 107/299 (35%), Gaps = 20/299 (6%)

Query: 57  KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF---DQIIRKSGDFDYRK 113
           K+  I +    P  L +L   +R      +++ ++R ++ S      ++ R +    +  
Sbjct: 31  KKPRIPTAVSIPENLSFL-QGFRDYLVAQTVSPHTRNAYLSDLIQCSELHRTASLPQWSS 89

Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
                +   +     +P S  + L+++R  +K+   Q+    NP  S   PK      + 
Sbjct: 90  EDIGDVLIELTKAGKSPRSIARCLSALRQFYKFLREQKLREDNPVASHHSPKIGRALPKD 149

Query: 174 WTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQK 228
            +++D++   +        G + R  FE L   GLR S+     ++ +      ++ T K
Sbjct: 150 LSEQDVEALINAPDISTTLGLRDRAMFEVLYACGLRVSELLNLRLELINLKQGFVRITGK 209

Query: 229 TGTIITVELP----DGFMKLLAMT-----PIGKETFFINNDKQKMNATQFSIWFKAKATK 279
                 V L     D   K LA +         +  F+      M+   F    K  A +
Sbjct: 210 GNKERLVPLGQYACDWIEKYLAESRPQLYKSNTDYLFLTQHGGIMSRQNFWYAIKRYALQ 269

Query: 280 AGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
           A +    S H +R   AT   + GA    +    G   +   + YT  A      + + 
Sbjct: 270 ANIQAELSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQHRMQALHHQ 328


>gi|218194771|gb|EEC77198.1| hypothetical protein OsI_15703 [Oryza sativa Indica Group]
          Length = 752

 Score =  147 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 61/361 (16%), Positives = 113/361 (31%), Gaps = 46/361 (12%)

Query: 8   PPFVTKERTRHGKIIYYFRKG---HGRRIRLPYPHE-------STFIPAYMSALTGSTPK 57
           P  + ++     K+    RK       R R+              F     +        
Sbjct: 390 PKGLPRDVV--DKVNAGVRKALEDPAVRKRIEDTGSLIVGNTPEQFAEQIKAEFDVYKTV 447

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD------Y 111
            +       +P  +   I           L+ N+  ++        +  G          
Sbjct: 448 VQNQKLSLDQPA-IDAFIDALWLED---GLSRNTLAAYRRDLVLYAQWLGQHASDTAGAL 503

Query: 112 RKITTKHIRSGVESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
                 H+++   +R      +SA + LT +R  F+WA+R+  +A +P + ++  ++   
Sbjct: 504 DATAEHHLKAYFAARHAETRATSANRRLTVLRRYFQWALRERRIAADPTVRLQAARQPLR 563

Query: 170 GIRPWTKEDMQQFK----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225
             +  +   ++       +  S G + R   E +  SGLR ++       H   +   ++
Sbjct: 564 VPKTLSAAQVEALLQAPDTSTSLGLRDRAMLELMYASGLRVTELVTLKTYHAGLSEGVLR 623

Query: 226 T-QKTGTIITVE------------LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW 272
              K G    V             L +    +LA         F+      M    F + 
Sbjct: 624 VMGKGGKERLVPFGEVAAQWMQRYLDEARADILAGQQTDD--LFVTRRGAGMTRAMFWVV 681

Query: 273 FKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
            K  A  AG+    S H +R   AT   + GA    +    G   +     YT  A R R
Sbjct: 682 VKKHAQAAGITVPLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTTIYTHVA-RER 740

Query: 331 L 331
           L
Sbjct: 741 L 741


>gi|288940120|ref|YP_003442360.1| tyrosine recombinase XerD [Allochromatium vinosum DSM 180]
 gi|288895492|gb|ADC61328.1| tyrosine recombinase XerD [Allochromatium vinosum DSM 180]
          Length = 297

 Score =  147 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 53/276 (19%), Positives = 92/276 (33%), Gaps = 24/276 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTK------HIRSGVESRKHTPSSAIQFLT 138
             L+ N+  +++S              R +            + +  +   P S+ + L+
Sbjct: 18  RGLSRNTLTAYQSDLRAFAHWLSQERGRTLIAAERADLLDYLARLAKQGRNPRSSARLLS 77

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRL 194
            +R  ++   R+  +  +P   VE PK      +  ++ D++   +        G + R 
Sbjct: 78  CLRQFYQHLRRRGLIEADPSARVEAPKLGRPLPKSLSEADVEALLNAPDTEDARGHRDRT 137

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLA------- 246
             E L  SGLR S+        +      ++   K G    V L +     L        
Sbjct: 138 MLEVLYASGLRVSELVNLTPSQVSLTQGVVRILGKGGKERLVPLGEDACNWLRDYVRGPR 197

Query: 247 ---MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301
              +     +  F       M    F    K  A  AGV K  S H +R   AT   + G
Sbjct: 198 FDILGGRASDFLFPTRRSDCMTRQAFWQLIKRYAILAGVAKPLSPHTLRHAFATHLLNHG 257

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
           A    +    G   +   + YT  A R RL   ++R
Sbjct: 258 ADLRVVQMLLGHSDLSTTQIYTHVA-RERLKQLHAR 292


>gi|145298066|ref|YP_001140907.1| site-specific integrase/recombinase [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142850838|gb|ABO89159.1| site-specific integrase/recombinase [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 303

 Score =  147 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 43/273 (15%), Positives = 94/273 (34%), Gaps = 22/273 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKI-----TTKHIRSGVESRKHTPSSAIQFLTS 139
             L+ N+  S+ S  ++            +       +H  +     +   SS  +FL++
Sbjct: 25  RGLSDNTVSSYRSDLEKFAFWLDGQGRSLLLAGMDDIQHYLAWRVDHQFAASSTARFLSA 84

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195
           +R  +++  R++  + +P + +E PK   +     ++ +++              + +  
Sbjct: 85  LRRFYQYLNREKLRSDDPTVLLEGPKLPKKLPSDLSEAEVEALLQSPLVDDPLELRDKAM 144

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFMKLLAMTPIGKET 254
            E L  +GLR S+      +H+      ++    G     V + +  +  L        T
Sbjct: 145 LELLYATGLRVSELVGLTAEHVSLRQGLVRVVGKGNKERLVPMGEEAVHWLERYYREART 204

Query: 255 FFI----------NNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302
             +          +   + M    F    K  A +AG+    S H +R   AT   + GA
Sbjct: 205 LLLGGTSSDVVFPSKQARMMTRQTFWHRIKLYAQRAGIRGELSPHTLRHAFATHLLNHGA 264

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335
               +    G   +   + YT  A+     +  
Sbjct: 265 DLRVVQMLLGHADLSTTQIYTHVANERLKALHG 297


>gi|30063432|ref|NP_837603.1| putative integrase for prophage CP-933U [Shigella flexneri 2a str.
           2457T]
 gi|56480016|ref|NP_707880.2| putative integrase for prophage CP-933U [Shigella flexneri 2a str.
           301]
 gi|30041685|gb|AAP17412.1| putative integrase for prophage CP-933U [Shigella flexneri 2a str.
           2457T]
 gi|56383567|gb|AAN43587.2| putative integrase for prophage CP-933U [Shigella flexneri 2a str.
           301]
          Length = 281

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 47/266 (17%), Positives = 89/266 (33%), Gaps = 15/266 (5%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH- 128
           T   L  ++  SA++  L+  ++  +  +  +++   G      I  +HIR  ++ R   
Sbjct: 2   TFGRLWEKFLASAYYSDLSPRTQKDYLQHQKKLLAVFGKVPADSIKPEHIRRYMDKRGEQ 61

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           + + A    +SM  ++ W   + YV  NPC  V + K K       T ++ Q   S    
Sbjct: 62  SKTQANHEKSSMSRVYSWGYERGYVKANPCAGVSKFKAKNRERYV-TDKEYQAVLSVAPL 120

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248
                +A E       R SD      + + N+   I+  KTG              +   
Sbjct: 121 --PVFIAMEIAYLCAARVSDVLSLKWEQIGNDGIFIQQGKTGKKQIKAWSPRLQAAIEKA 178

Query: 249 P--IGKETFFINNDKQKMNATQFSIWFKAKATKAG------VNKSAHGVRKFSATISADA 300
                      N    +     F+  +     +AG       + + H + K       + 
Sbjct: 179 KQLPTSAYVISNQYGNRYMYKGFNEMWVEARNRAGKISGILTDFTFHDL-KAKGISDYE- 236

Query: 301 GATAHELMATYGWKTVDQAETYTKGA 326
             ++ +     G KT  Q   Y +  
Sbjct: 237 -GSSRDKQLFSGHKTEGQVLIYDRKV 261


>gi|331701395|ref|YP_004398354.1| Tyrosine recombinase xerC [Lactobacillus buchneri NRRL B-30929]
 gi|329128738|gb|AEB73291.1| Tyrosine recombinase xerC [Lactobacillus buchneri NRRL B-30929]
          Length = 296

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 46/274 (16%), Positives = 92/274 (33%), Gaps = 24/274 (8%)

Query: 75  ISEYRKSAH-WGSLAVNSRISFESYFD---QIIRKSGD--FDYRKITTKHIRSGVESRKH 128
           I +Y         L+ N+  S+            K      D  +         ++ +  
Sbjct: 6   IEDYLHYLRVERGLSDNTIKSYRQDLQEAGAFFDKHAKSIADIDQFVILDYLETLQRQHK 65

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK----S 184
             ++ I+ ++++R  F++ V+   +  +P L V+ PK+        T   + Q      +
Sbjct: 66  ARNTVIRVVSTLRRFFQYLVQFHVIVDDPMLKVDSPKKAQTLPDVLTVAQVNQLLSMPDT 125

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMK 243
               G + R   E L  +GLR S+     +  L   +  ++T  K      + + D  + 
Sbjct: 126 HKKLGLRDRAILETLYATGLRVSELVNLKLGDLHLPMNLLQTIGKGDKERIIPISDVAID 185

Query: 244 LLAMTP-----------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290
            L                  E  F+N    ++         K    +AG+ +  + H +R
Sbjct: 186 WLNQYIQSTRVQLLSGRPNSEFLFLNAHGHQLTRQAIWQMIKKYVNQAGIKRHVTPHTLR 245

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              AT   + GA    +    G   +   + YT 
Sbjct: 246 HSFATHLLENGADLRIVQELLGHSDISTTQIYTH 279


>gi|332140209|ref|YP_004425947.1| tyrosine recombinase [Alteromonas macleodii str. 'Deep ecotype']
 gi|327550231|gb|AEA96949.1| tyrosine recombinase [Alteromonas macleodii str. 'Deep ecotype']
          Length = 308

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 45/286 (15%), Positives = 100/286 (34%), Gaps = 31/286 (10%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKI------TTKHIRSGVESRKHTPSSAIQFLT 138
             L+ +++ S+ +   ++   S +   + I        +   +    +  +  S  + L+
Sbjct: 30  KGLSEHTQQSYRTDLSKLAVFSNNQGIKDIAVLSTEQLQDYLAYRHDKGLSTRSTQRALS 89

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194
           ++R  F + + ++    +P  ++  PK         +++ ++   +          + R 
Sbjct: 90  AIRAFFVYLISKQIRVDSPVSALSNPKTPKALPASLSEQQVEDLLNAPQTDDPIECRDRS 149

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFMKLLAMTPIGKE 253
             E L  +GLR S+     +  +      ++    G     V L +  ++ L        
Sbjct: 150 MLEVLYATGLRVSELIGLTMDQISLQQGVVRVVGKGNKERLVPLGEEAIEWLLTYIKTAR 209

Query: 254 TFF---------INNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGA 302
                       ++   QKM    F    K  A KAG+  + S H +R   AT   + GA
Sbjct: 210 PILATKTSDFVYLSKRGQKMTRQTFWHRIKYYAVKAGIEQHLSPHTLRHAFATHLLNHGA 269

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
               +    G   +   + YT  A         + R+ +++ S  P
Sbjct: 270 DLRVVQMLLGHSDLSTTQIYTHVA---------TERLQTLIHSHHP 306


>gi|251796343|ref|YP_003011074.1| tyrosine recombinase XerD [Paenibacillus sp. JDR-2]
 gi|247543969|gb|ACT00988.1| tyrosine recombinase XerD [Paenibacillus sp. JDR-2]
          Length = 296

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 41/264 (15%), Positives = 92/264 (34%), Gaps = 24/264 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGD---FDYRKITTKHIRSGVESRKHTPSSAI---QFLT 138
            +L+ ++  S+      ++         +   +   H+   +   K +        + + 
Sbjct: 16  RALSSSTLESYGRDLQGLLDYLEQQSIANVADVHRHHLSHYLLRLKESGRKTSTVSRHIA 75

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFWSEGSQPRL 194
           S+R  F +     Y+ +NP + +E PK++ +     + E+    ++  +   + G + + 
Sbjct: 76  SIRAFFHYLAVNGYIQLNPAIYIESPKQEKKEPSVLSMENAGLLLETPQPVTAAGKRDKA 135

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFMKLLA------- 246
             E L  +G+R S+     V  + + +  I+   +G     +         L        
Sbjct: 136 MLELLYATGIRVSELISLNVDSVNSQLNIIRCVGSGMKERIIPFGRMAAAALDDYLQNGR 195

Query: 247 ----MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADA 300
                    +   F+N    +M    F    K  A +AG+    + H +R   A    + 
Sbjct: 196 AELLRQSEDEPALFLNQLGTRMTRQGFWKMVKKYAKEAGISEEITPHTLRHSFAAHLLEN 255

Query: 301 GATAHELMATYGWKTVDQAETYTK 324
           GA    +    G   +   + YTK
Sbjct: 256 GADLRAVQELLGHADISTTQRYTK 279


>gi|146281579|ref|YP_001171732.1| site-specific tyrosine recombinase XerD [Pseudomonas stutzeri
           A1501]
 gi|145569784|gb|ABP78890.1| integrase/recombinase XerD [Pseudomonas stutzeri A1501]
          Length = 298

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 55/288 (19%), Positives = 111/288 (38%), Gaps = 28/288 (9%)

Query: 74  LISEYRKSAHW--GSLAVNSRISFESYF---DQIIRKSG---DFDYRKITTKHIRSGVES 125
           +I  Y   A W    LA NSR ++ +     +  +++ G       R++   H+ +   +
Sbjct: 8   VIDRYL-DALWLEKGLADNSREAYRNDLASFNGWLQERGVRLAAAGREVILDHL-AWRLN 65

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
             +   S  +FL+ +R  +++ +R+  ++++P L V+ P+      +  ++ D++   + 
Sbjct: 66  NGYKARSTARFLSGLRGFYRYLLREGEISLDPTLRVDLPRLGRPLPKALSEADVEALLAA 125

Query: 186 ----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240
                  G + R   E L   GLR ++     ++ +      ++T  K      V L + 
Sbjct: 126 PDTGDPLGLRDRAMLEVLYACGLRVTELISLTLEQVSMRQGVLRTFGKGNKERLVPLGEE 185

Query: 241 FMKLLAMTPIGK----------ETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHG 288
            +  L                 +  F +   ++M    F    K  A  AG+    S H 
Sbjct: 186 ALHWLQRYQRDARDQLLAGRPSDVLFPSQRGEQMTRQTFWHRIKLHARGAGIATGISPHT 245

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
           +R   AT   + GA    +    G   +   + YT  A R RL   ++
Sbjct: 246 LRHAFATHLLNHGADLRTVQMLLGHSDLSTTQIYTHIA-RARLQELHA 292


>gi|300722127|ref|YP_003711410.1| site-specific tyrosine recombinase [Xenorhabdus nematophila ATCC
           19061]
 gi|297628627|emb|CBJ89205.1| site-specific tyrosine recombinase [Xenorhabdus nematophila ATCC
           19061]
          Length = 323

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 49/278 (17%), Positives = 95/278 (34%), Gaps = 26/278 (9%)

Query: 74  LISEYRKSAHW--GSLAVNSRISFE---SYFDQIIRKSGD--FDYRKITTKHIRSGVESR 126
           LI ++  +  W    LA N+  S+       D  +   G      + I  +   +     
Sbjct: 32  LIEQFLDTI-WLEKDLAENTLASYRLDLQALDNWLMNYGHDVLLVQVIELQSFLAERVDG 90

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185
            +  SS+ + L++MR LF++  R++    +P   +  PK      +  +++ ++   +  
Sbjct: 91  GYKASSSARLLSAMRRLFQYLYREKMREDDPTALLSAPKLPKRLPKDLSEKQVEDLLNTP 150

Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGF 241
                   + +   E L   GLR S+     +  +      ++    G     V L +  
Sbjct: 151 LTDQPIELRDKAMLEVLYACGLRVSELVGLTLSDVSLRQGVVRVVGKGNKERLVPLGEEA 210

Query: 242 MKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHG 288
           +  L                 + FF +    +M    F    K  A  A ++    S H 
Sbjct: 211 VYWLEKYLEYGRPWLLNGAVSDVFFPSKRGTQMTRQTFWHRIKHYAILAEIDAERLSPHV 270

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           +R   AT   + GA    +    G   +   + YT  A
Sbjct: 271 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA 308


>gi|116494854|ref|YP_806588.1| integrase [Lactobacillus casei ATCC 334]
 gi|191638361|ref|YP_001987527.1| Tyrosine recombinase xerD [Lactobacillus casei BL23]
 gi|227535149|ref|ZP_03965198.1| site-specific DNA tyrosine recombinase [Lactobacillus paracasei
           subsp. paracasei ATCC 25302]
 gi|239631553|ref|ZP_04674584.1| tyrosine recombinase xerD [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|301066416|ref|YP_003788439.1| integrase [Lactobacillus casei str. Zhang]
 gi|116105004|gb|ABJ70146.1| tyrosine recombinase XerD subunit [Lactobacillus casei ATCC 334]
 gi|190712663|emb|CAQ66669.1| Tyrosine recombinase xerD [Lactobacillus casei BL23]
 gi|227187194|gb|EEI67261.1| site-specific DNA tyrosine recombinase [Lactobacillus paracasei
           subsp. paracasei ATCC 25302]
 gi|239526018|gb|EEQ65019.1| tyrosine recombinase xerD [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|300438823|gb|ADK18589.1| Integrase [Lactobacillus casei str. Zhang]
 gi|327382389|gb|AEA53865.1| hypothetical protein LC2W_1532 [Lactobacillus casei LC2W]
 gi|327385590|gb|AEA57064.1| hypothetical protein LCBD_1567 [Lactobacillus casei BD-II]
          Length = 293

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 45/271 (16%), Positives = 98/271 (36%), Gaps = 23/271 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH--IRSGVESRKHT--PSSAIQFLTSM 140
             LA  ++ S++               R    +   I+S ++ +  T  P+S  + ++++
Sbjct: 16  RGLAKATQTSYQQDLITFSAWLAARKRRTFPEEFGTIQSFLKEQNATKAPASVSRMISAL 75

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLAF 196
           R  +++ +R+  ++ +P   ++ PKR        + +++    +        G + R  F
Sbjct: 76  RKFYRFLLREGAISADPMTKIDTPKRAQHLPATLSSQEVDALMAKPDTDKPLGLRDRAIF 135

Query: 197 EFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254
           E +  +GLR S+     +   HL  N+  + T K      V +     + +         
Sbjct: 136 ELMYATGLRVSEVVDLRLDQLHLAMNLLQV-TGKGDKERLVPISPQATQWVDRYLQEARP 194

Query: 255 ----------FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302
                      F+N     M         KA     G+ K  + H +R   AT   + GA
Sbjct: 195 KLLKRVQPKNVFVNFHGGPMTRQGIWKNLKAYIASIGIEKDVTPHTLRHSFATRLLENGA 254

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGI 333
               +    G   +   + YT  +++  + +
Sbjct: 255 DLRVVQELLGHSDISTTQIYTHLSNQHLVAV 285


>gi|323161906|gb|EFZ47780.1| phage integrase family protein [Escherichia coli E128010]
          Length = 281

 Score =  146 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 47/266 (17%), Positives = 89/266 (33%), Gaps = 15/266 (5%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH- 128
           T   L  ++  SA++  L+  ++  +  +  +++   G      I  +HIR  ++ R   
Sbjct: 2   TFGRLWEKFLASAYYSDLSPRTQKDYLQHQKKLLAVFGKVPADSIKPEHIRRYMDKRGEQ 61

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           + + A    +SM  ++ W   + YV  NPC  V + K K       T ++ Q   S    
Sbjct: 62  SKTQANHEKSSMSRVYSWGYERGYVKGNPCAGVSKFKAKNRERYV-TDKEYQAVLSVAPL 120

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248
                +A E       R SD      + + N+   I+  KTG              +   
Sbjct: 121 --PVFIAMEIAYLCAARVSDVLSLKWEQIGNDGIFIQQGKTGKKQIKAWSPRLQAAIEKA 178

Query: 249 P--IGKETFFINNDKQKMNATQFSIWFKAKATKAG------VNKSAHGVRKFSATISADA 300
                      N    +     F+  +     +AG       + + H + K       + 
Sbjct: 179 KQLPTSAYVISNQYGNRYMYKGFNEMWVEARNRAGKISGILTDFTFHDL-KAKGISDYE- 236

Query: 301 GATAHELMATYGWKTVDQAETYTKGA 326
             ++ +     G KT  Q   Y +  
Sbjct: 237 -GSSRDKQLFSGHKTEGQVLIYDRKV 261


>gi|296447647|ref|ZP_06889566.1| integrase family protein [Methylosinus trichosporium OB3b]
 gi|296254853|gb|EFH01961.1| integrase family protein [Methylosinus trichosporium OB3b]
          Length = 227

 Score =  146 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 82/222 (36%), Gaps = 12/222 (5%)

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVE---RPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
               + ++F W   + Y+A NP   ++   RP+   E  RPWT  +              
Sbjct: 1   MKAVLSIIFGWGAERGYLADNPATGIKDIRRPRGAAEPNRPWTDSERHAVLDAAPA--HM 58

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI-G 251
           R A   ++ +GL   D+      + ++   + +  KTG  +   +P     +L   P   
Sbjct: 59  RPAIALMMMTGLGPKDALTLPRNYWRDGEIATRRAKTGEPVFWPVPSPLDDVLKAAPRHD 118

Query: 252 KETFFINNDKQKMNATQFSIWFK------AKATKAGVNKSAHGVRKFSATISADAGATAH 305
             T   N+  +      F   ++       +    G+  + +G+R   A I  +AG    
Sbjct: 119 ALTLCANSAGRPWTLDGFRASWRTLRIKLEEKDAIGLGLTLYGLRHTVAVILREAGHDER 178

Query: 306 ELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
            +    G +T++ A  Y+KGAD  R     +      ++   
Sbjct: 179 TIADALGQRTIEMARHYSKGADLRRKMGGVAVSFGDELNRRR 220


>gi|322419214|ref|YP_004198437.1| tyrosine recombinase XerD [Geobacter sp. M18]
 gi|320125601|gb|ADW13161.1| tyrosine recombinase XerD [Geobacter sp. M18]
          Length = 292

 Score =  146 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 48/267 (17%), Positives = 96/267 (35%), Gaps = 21/267 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFLTSMR 141
              A N+  ++     + +   G+ +  +I    +   +   K     P S  + L+++R
Sbjct: 16  RGAAANTVAAYSRDLTRYLAYLGEREPDQIRPSDVTGYLGKLKGEGIAPRSRARALSALR 75

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLAFE 197
           +L ++ VR+ +  +NP   VE PK   +     +  +++   +      +   + +   E
Sbjct: 76  MLHRFLVREGHCEVNPTAIVEAPKGLLKLPTVLSSREVEALLASPLDTGAIELRDKAMLE 135

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLL----------A 246
            L  +GLR S+        +      + T  K      + + +   + +           
Sbjct: 136 LLYATGLRVSELVGLKTGDVNIAAGYLMTIGKGDKERLIPMGESACRAVGEYLEKARQEL 195

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATA 304
           +        FI+   + M    F    K +A +AGV    S H +R   AT   + GA  
Sbjct: 196 LKQKSSPLLFISRLGEGMTRQAFWNIIKKRALQAGVRSGISPHTLRHSFATHLLENGADL 255

Query: 305 HELMATYGWKTVDQAETYTKGADRIRL 331
             +    G   +   + YT    R RL
Sbjct: 256 RSVQIMLGHADLSTTQIYTH-VTRERL 281


>gi|294840865|ref|ZP_06785548.1| site-specific tyrosine recombinase [Acinetobacter sp. 6014059]
 gi|323516350|gb|ADX90731.1| site-specific recombinase XerD [Acinetobacter baumannii
           TCDC-AB0715]
          Length = 306

 Score =  146 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 54/294 (18%), Positives = 104/294 (35%), Gaps = 20/294 (6%)

Query: 55  TPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF---DQIIRKSGDFDY 111
             K+  I SP + P  L +L   +R      +++ ++R ++ S      ++ +K+   D+
Sbjct: 2   INKKPRIPSPVQIPEHLSFL-QGFRDYLVAQTVSPHTRNAYLSDLIQCSELHKKNRLPDW 60

Query: 112 RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
                  +   +     +P S  + L+++R  +K+   Q+  + NP  +   PK      
Sbjct: 61  TSDDISDVLIELTKVGKSPRSIARCLSALRQFYKFLREQKLRSDNPVATHHSPKIGRALP 120

Query: 172 RPWTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-T 226
           +   +ED++            G + R  FE L   GLR S+     ++ +      ++ T
Sbjct: 121 KDLCEEDVEALIQAPDITTALGLRDRAMFEVLYACGLRVSELLNLRLELINLKQGYLRIT 180

Query: 227 QKTGTIITVELPDGFMKLLAMT---------PIGKETFFINNDKQKMNATQFSIWFKAKA 277
            K      V L       +                +  F+      M+   F    K  A
Sbjct: 181 GKGNKERLVPLGQYACDWVERYLNEARPQFYKSSTDYLFLTQHGGIMSRQNFWYAIKRYA 240

Query: 278 TKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            +A +    S H +R   AT   + GA    +    G   +   + YT  A   
Sbjct: 241 LQANIQAELSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVR 294


>gi|114561848|ref|YP_749361.1| tyrosine recombinase XerD [Shewanella frigidimarina NCIMB 400]
 gi|114333141|gb|ABI70523.1| tyrosine recombinase XerD [Shewanella frigidimarina NCIMB 400]
          Length = 305

 Score =  146 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 51/288 (17%), Positives = 109/288 (37%), Gaps = 26/288 (9%)

Query: 74  LISEYRKSA-HWGSLAVNSRISFESYF---DQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           LI+++         L+ N+ +S+ +     ++ I   G  D  ++    +R  +  R   
Sbjct: 15  LINQFLDDLWSTNGLSDNTLVSYRTDLQNAERYILTKG-KDLLQVDQALLRDYLAERFDK 73

Query: 130 P---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185
               SS  + L+S+R  + + + ++ ++ +P   ++ PK   +     ++  +    S  
Sbjct: 74  QFAKSSTARLLSSLRRFYAYLLVKQKISQDPTALIKSPKLVRQLPDTLSEAQIDNLLSEP 133

Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPD-- 239
                   + +   E L  +GLR ++     ++ +      ++   K G    V L +  
Sbjct: 134 NIDDPIEHRDKAMLELLYATGLRVTELVSLTMEQISLRQGLVRVMGKGGKERLVPLGELA 193

Query: 240 --------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289
                    F +   ++    +  F +   Q M    F    K  A +AG+    S H +
Sbjct: 194 ITAVEQYIKFARAELLSMKQSDVLFPSRRGQMMTRQTFWHRIKLYAARAGIQCHLSPHTL 253

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
           R   AT   + GA    +    G   +   + YT  A ++RL   +S+
Sbjct: 254 RHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVA-KVRLQQLHSQ 300


>gi|238763216|ref|ZP_04624181.1| Tyrosine recombinase xerD [Yersinia kristensenii ATCC 33638]
 gi|238698489|gb|EEP91241.1| Tyrosine recombinase xerD [Yersinia kristensenii ATCC 33638]
          Length = 299

 Score =  146 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 54/284 (19%), Positives = 107/284 (37%), Gaps = 27/284 (9%)

Query: 74  LISEYRKSAHW--GSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVESR--- 126
           LI ++   A W   +LA N+  S+      +    +  D D  +  ++ ++S +  R   
Sbjct: 8   LIEQFL-DALWLERNLAENTLASYRLDLHALSGWLEHHDSDLLRAGSQDLQSFLAERIEG 66

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185
            +  +S+ + L++MR LF++  R++    +P   +  PK      +  ++  +    +  
Sbjct: 67  GYKATSSARLLSAMRRLFQYLYREKLREDDPTALLSSPKLPQRLPKDLSEAQVDALLNSP 126

Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241
                   + +   E L  +GLR S+     +  +      ++   K      V L +  
Sbjct: 127 NVDIPLELRDKAMLEVLYATGLRVSELVGLTISDVSLRQGVVRVIGKGNKERLVPLGEEA 186

Query: 242 MKLLAMTPIGKETFFIN----------NDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288
           +  +         + IN          N  Q+M    F    K  A  AG++    S H 
Sbjct: 187 VYWIENYMEHGRPWLINGQSLDVLFPSNRSQQMTRQTFWHRIKHYAILAGIDSERLSPHV 246

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRL 331
           +R   AT   + GA    +    G   +   + YT  A +R++L
Sbjct: 247 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKL 290


>gi|262404730|ref|ZP_06081285.1| site-specific recombinase XerD [Vibrio sp. RC586]
 gi|262349762|gb|EEY98900.1| site-specific recombinase XerD [Vibrio sp. RC586]
          Length = 302

 Score =  146 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 46/279 (16%), Positives = 106/279 (37%), Gaps = 24/279 (8%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVES 125
           + L+ ++  +  +   LA N+  S+ +   +++       YR         +  +  +  
Sbjct: 9   QGLVEQFLDAMWFERGLAENTVASYRNDLSKLLGWMAQHQYRLDFISFSGLQEYQIWLTE 68

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           + + P+S  + L+++R LF++  R++  A +P   +  PK  T   +  T+  ++   S 
Sbjct: 69  QDYKPTSKARMLSAIRRLFQYLHREKVRADDPSALLISPKLPTRLPKDLTEAQVEALLSA 128

Query: 186 ----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240
                    + +   E L  +GLR ++     ++++      ++   K G    V + + 
Sbjct: 129 PDPQTPIELRDKAMLELLYATGLRVTELVSLTMENMSLRQGVVRVIGKGGKERLVPMGEN 188

Query: 241 FMKLLAMTPIGKETFFI----------NNDKQKMNATQFSIWFKAKATKAGVN---KSAH 287
            ++ +        +  +          ++  Q+M    F    K  A  A ++    S H
Sbjct: 189 AVEWIETFLQQGRSLLLGEQTSDIVFPSSRGQQMTRQTFWHRIKHYAVIAEIDVEQLSPH 248

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            +R   AT   + GA    +    G   +   + YT  A
Sbjct: 249 VLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVA 287


>gi|120555190|ref|YP_959541.1| tyrosine recombinase XerD [Marinobacter aquaeolei VT8]
 gi|120325039|gb|ABM19354.1| tyrosine recombinase XerD subunit [Marinobacter aquaeolei VT8]
          Length = 301

 Score =  146 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 51/272 (18%), Positives = 96/272 (35%), Gaps = 25/272 (9%)

Query: 86  SLAVNSRISFESYFDQII----RKSGDFDYRKITTKHIRSGVES---RKHTPSSAIQFLT 138
            L   +R ++ S   ++     +++G    R      + + +          S+A + L+
Sbjct: 22  GLGEKTRQAYASDLYRLSGWLEQQAGAPTLRSARRTDLLAWMSRGLSDGLKTSTAARRLS 81

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194
            +R  +++ +R+  +A +P L ++ P+         T+ D++   +          + R 
Sbjct: 82  GVRRFYRFLLREGIIAEDPTLRIDSPRLPRRLPDTLTEADVESLLTEPDPELPVELRDRA 141

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLL---AMTPI 250
             E L   GLR S+     V  +      ++   K G    V L +  +  L        
Sbjct: 142 MLEILYGCGLRVSELTGLTVDQVNLRQGVVRIQGKGGKERLVPLGEEAVDWLLQYMRQAR 201

Query: 251 G-------KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301
           G        +  F  N    M    F    +  A + G+ K  S H +R   AT   + G
Sbjct: 202 GELLRGKTSDALFPGNRGTAMTRQAFWYRIRHYAIRCGITKHLSPHTLRHAFATHLLNHG 261

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           A    +    G   +   + YT  A R RL  
Sbjct: 262 ADLRVVQMLLGHSDLSTTQIYTHVA-RQRLQD 292


>gi|85859051|ref|YP_461253.1| integrase/recombinase [Syntrophus aciditrophicus SB]
 gi|85722142|gb|ABC77085.1| integrase/recombinase [Syntrophus aciditrophicus SB]
          Length = 296

 Score =  146 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 48/276 (17%), Positives = 92/276 (33%), Gaps = 24/276 (8%)

Query: 73  WLISEYRKSAH-WGSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGVESRKH 128
            LI EY          + N+  ++     +   +I++ G  +  +I+   +   +   K 
Sbjct: 4   QLIDEYLNYLTVEKGASHNTLEAYGRDLSRYSGLIQERGIKEIHEISPDDVIYYMAELKR 63

Query: 129 T---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS- 184
                +S  + L ++R  +K+ +R++ +  NP   +E  K         + E+M Q  S 
Sbjct: 64  KGLSANSINRSLAALRGFYKFLLREKKIEQNPVAEIELAKVWMRLPDTLSHEEMDQLLSQ 123

Query: 185 ---FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDG 240
                    +     E +  +GLR S+        +   +  +  Q  G     V +   
Sbjct: 124 PGVRTDSAIRDTAMLELMYATGLRVSELISLTTGSINWQVGYLVVQGKGNKERIVPIGQV 183

Query: 241 FMKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHG 288
             + +                    F+N   Q M    F    +  A KAG+ K    H 
Sbjct: 184 AYEHVRRYFDEVRPKCIRGAQTNVLFLNKSGQGMTRQGFWKLVRKYAVKAGLQKKVHPHT 243

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            R   A+   + GA    +    G   +   + YT 
Sbjct: 244 FRHSFASHLLEGGADLRSVQMMLGHADISTTQIYTH 279


>gi|69248064|ref|ZP_00604609.1| Phage integrase:Phage integrase, N-terminal SAM-like [Enterococcus
           faecium DO]
 gi|68194583|gb|EAN09074.1| Phage integrase:Phage integrase, N-terminal SAM-like [Enterococcus
           faecium DO]
          Length = 284

 Score =  146 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 43/264 (16%), Positives = 98/264 (37%), Gaps = 25/264 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRK-------ITTKHIRSGVESRKHTPSSAIQFL 137
             L+ N+R S+E   +Q +    +            +  + +    E +K T ++  + +
Sbjct: 5   RGLSANTRQSYERDLEQYLHFLQEQKIASWQDVDRFLVIRFLEKLHEEKKAT-ATVTRMI 63

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPR 193
           +S+R   ++  ++     +P   ++ PK+  +     T  ++++           G + R
Sbjct: 64  SSLRRFHQFLRQERITDHDPMQHIDTPKKAQKLPSTLTLTEVEKLIEAPDTTKTLGIRDR 123

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM----- 247
              E +  +G+R S+     +  L  ++  ++T  K      + L D  ++ L       
Sbjct: 124 AILEVMYATGMRVSELIGLKLGDLHLSLGLVQTVGKGDKERIIPLGDYAIQWLERYLDEA 183

Query: 248 -----TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
                    +   F+NN  + ++        K    +AG+ K  + H +R   AT   + 
Sbjct: 184 RPLLVKDASEMHVFVNNHGKGLSRQGIWKNLKQLVREAGIYKEVTPHTLRHSFATHLLEN 243

Query: 301 GATAHELMATYGWKTVDQAETYTK 324
           GA    +    G   +   + YT 
Sbjct: 244 GADLRTVQELLGHADISTTQIYTH 267


>gi|184156584|ref|YP_001844923.1| site-specific recombinase XerD [Acinetobacter baumannii ACICU]
 gi|183208178|gb|ACC55576.1| Site-specific recombinase XerD [Acinetobacter baumannii ACICU]
 gi|322506471|gb|ADX01925.1| xerD [Acinetobacter baumannii 1656-2]
          Length = 306

 Score =  146 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 54/294 (18%), Positives = 104/294 (35%), Gaps = 20/294 (6%)

Query: 55  TPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF---DQIIRKSGDFDY 111
             K+  I SP + P  L +L   +R      +++ ++R ++ S      ++ +K+   D+
Sbjct: 2   INKKPRIPSPVQIPEHLSFL-QGFRDYLVAQTVSPHTRNAYLSDLIQCSELHKKNRLPDW 60

Query: 112 RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
                  +   +     +P S  + L+++R  +K+   Q+  + NP  +   PK      
Sbjct: 61  TSDDISDVLIELTKVGKSPRSIARCLSALRQFYKFLREQKLRSDNPVATHHSPKIGRALP 120

Query: 172 RPWTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-T 226
           +   +ED++            G + R  FE L   GLR S+     ++ +      ++ T
Sbjct: 121 KDLCEEDVEALIQAPDITTALGLRDRAMFEVLYACGLRVSELLNLRLELINLKQGYLRIT 180

Query: 227 QKTGTIITVELPDGFMKLLAMT---------PIGKETFFINNDKQKMNATQFSIWFKAKA 277
            K      V L       +                +  F+      M+   F    K  A
Sbjct: 181 GKGNKERLVPLGQYACDWVERYLNEARPQLYKSSTDYLFLTQHGGIMSRQNFWYAIKRYA 240

Query: 278 TKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            +A +    S H +R   AT   + GA    +    G   +   + YT  A   
Sbjct: 241 LQANIQAELSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVR 294


>gi|227513310|ref|ZP_03943359.1| site-specific DNA tyrosine recombinase XerD [Lactobacillus buchneri
           ATCC 11577]
 gi|227083511|gb|EEI18823.1| site-specific DNA tyrosine recombinase XerD [Lactobacillus buchneri
           ATCC 11577]
          Length = 295

 Score =  146 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 42/263 (15%), Positives = 89/263 (33%), Gaps = 23/263 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDF-----DYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
             L+ N+  S++    + I              +    +    ++  K + ++ I+ ++S
Sbjct: 16  RGLSENTIKSYQQDLSEAIHFFQKTTKDISKVDQFLILNYLENLQQEKKSRNTVIRTVSS 75

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLA 195
           +R  F++  +   V  +P L V+ PK+        +  ++ +  S        G + R  
Sbjct: 76  LRNFFRYLAQFGVVPDDPMLKVDSPKQSKTLPDVLSVSEVNKLLSMPNVSKPLGVRDRAM 135

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPDGFMKL---------- 244
            E L  +GLR S+     +  L   +       K      + + D  +            
Sbjct: 136 LETLYATGLRVSELVNLRLVDLHLPMKLIQTVGKGDRERIIPIGDVAIDWITQYLKTTRI 195

Query: 245 -LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301
            L       +  F+N   +++         K     AG+ +  + H +R   AT   + G
Sbjct: 196 DLLRKRTNTDFVFLNAHGRRLTRQAIWQMIKKYVKLAGIKRHVTPHTLRHSFATHLLENG 255

Query: 302 ATAHELMATYGWKTVDQAETYTK 324
           A    +    G   +   + YT 
Sbjct: 256 ADLRIVQELLGHADISTTQIYTH 278


>gi|257867648|ref|ZP_05647301.1| phage integrase [Enterococcus casseliflavus EC30]
 gi|257873977|ref|ZP_05653630.1| phage integrase [Enterococcus casseliflavus EC10]
 gi|257801731|gb|EEV30634.1| phage integrase [Enterococcus casseliflavus EC30]
 gi|257808141|gb|EEV36963.1| phage integrase [Enterococcus casseliflavus EC10]
          Length = 296

 Score =  146 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 46/265 (17%), Positives = 100/265 (37%), Gaps = 26/265 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDY-------RKITTKHIRSGVESRKHTPSSAIQFL 137
             L+ N+R S++    Q +               R I    ++S  ++ K + ++ I+ +
Sbjct: 16  RGLSQNTRASYQRDLQQYLAFLQKKQVTQWQQIDRVIVLSFLQSLQDAGKSS-ATVIRMV 74

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KSFWSEGSQPR 193
           +S+R   ++  ++     +P   ++ PK++ +     + +++++      +    G + R
Sbjct: 75  SSLRRFHQYLRQERLTDHDPMQHIDSPKKQQKLPDTLSLQEVERLIETPDTRAVLGIRDR 134

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPD-----------GF 241
              E +  +GLR S+     +  L  ++  +  T K      V L D             
Sbjct: 135 AILEVMYATGLRVSELIGLKLNDLHLSMGLLQTTGKGDKERIVPLGDLAIQWIETYLSDA 194

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
              L      +   F+NN   +++        KA   +AG+ K  + H +R   AT   +
Sbjct: 195 RPYLTRKTPDESHLFVNNHGTQLSRQGIWKNLKALVRQAGITKNVTPHTLRHSFATHLLE 254

Query: 300 AGATAHELMATYGWKTVDQAETYTK 324
            GA    +    G   +   + YT 
Sbjct: 255 NGADLRTVQELLGHADISTTQIYTH 279


>gi|39996918|ref|NP_952869.1| integrase/recombinase XerD [Geobacter sulfurreducens PCA]
 gi|39983806|gb|AAR35196.1| integrase/recombinase XerD [Geobacter sulfurreducens PCA]
          Length = 295

 Score =  146 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 47/263 (17%), Positives = 94/263 (35%), Gaps = 22/263 (8%)

Query: 89  VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT---PSSAIQFLTSMRVLFK 145
            +       Y   + + +G  D   I   H+   +   K +     S  + L+++R+  +
Sbjct: 24  ESYARDLSRYLGYVEQHAG-GDPAAIRPLHVADFLAHLKESGLGARSRARALSAVRMFHR 82

Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFEFLLY 201
           + + + Y   NP   +E P+   +  +  T  +++   +          + R   E L  
Sbjct: 83  FLLVEGYAETNPTSIIEAPRVLAKLPQVLTGREVEMLLAAPAGDAPIEVRDRAMLELLYA 142

Query: 202 SGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDG--------FMKLLAMTPIGK 252
           +GLR S+      + +  +   +    K      V + +                   G 
Sbjct: 143 TGLRVSELVGLRTRDVNTSAGYLMTVGKGEKERLVPMGESACAAVVLYLSSARIQLGRGG 202

Query: 253 ET--FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELM 308
           E+   F++   ++M    F    K ++ +AG+ K  S H +R   AT   + GA    + 
Sbjct: 203 ESPFLFLSRLGERMTRQAFWNIIKKRSRQAGILKGISPHTLRHSFATHLLENGADLRSVQ 262

Query: 309 ATYGWKTVDQAETYTKGADRIRL 331
           A  G   +   + YT    R RL
Sbjct: 263 AMLGHADLSTTQIYTH-VTRERL 284


>gi|311030726|ref|ZP_07708816.1| site-specific tyrosine recombinase XerD [Bacillus sp. m3-13]
          Length = 296

 Score =  146 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 41/264 (15%), Positives = 94/264 (35%), Gaps = 24/264 (9%)

Query: 85  GSLAVNSRISFES-------YFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFL 137
             LA N+ +S+E        Y  ++   S      + T       +     +  +  + +
Sbjct: 16  KGLASNTVVSYERDLKSYLLYLSKVEEISSLEAVSRSTIIQFLKFLTENGKSSKTIARHI 75

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPR 193
            S+R   ++ +R++    +P + ++RPK++ +  +  + E++Q            G + +
Sbjct: 76  ASIRSFHQFLLREKVTTQDPTVHIDRPKQEQKLPQVMSVEEVQALLDSPDTSKVFGMRDK 135

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLA------ 246
              E L  +G+R S+     +  +   +  ++   K      + L       +       
Sbjct: 136 AMLELLYATGMRVSELISLNLSDVHLTMGFVRCIGKGNKERIIPLGTMAQNAITNYIEES 195

Query: 247 ----MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
               +     +  F+N    ++    F    K    +AG+ K  + H +R   AT   + 
Sbjct: 196 RSQLLKKKTTDALFVNLYGNRLTRQGFWKILKKLTKEAGIEKELTPHTLRHSFATHLLEN 255

Query: 301 GATAHELMATYGWKTVDQAETYTK 324
           GA    +    G   +   + YT 
Sbjct: 256 GADLRAVQEMLGHADISTTQIYTH 279


>gi|95929136|ref|ZP_01311880.1| Tyrosine recombinase XerD [Desulfuromonas acetoxidans DSM 684]
 gi|95134634|gb|EAT16289.1| Tyrosine recombinase XerD [Desulfuromonas acetoxidans DSM 684]
          Length = 298

 Score =  146 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 43/264 (16%), Positives = 86/264 (32%), Gaps = 24/264 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE------SRKHTPSSAIQFLT 138
             L+ N+  S+     + I    +     +        ++       +     S  + L 
Sbjct: 18  RGLSANTLESYARDLQRYIGFLEERHINDVIAIRQNDVLDFFTELKEQGMGVRSRARLLA 77

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRL 194
           ++R    +AV +  +A NP   +  PK         +  D+        +G     +   
Sbjct: 78  ALRGFHHYAVDEYQLANNPVARLTTPKMLQTLPDTLSPADVDALLDINDDGQALTRRDIA 137

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLL 245
             E L  +G+R S+     +  L  N   ++    G+   +          L D   ++ 
Sbjct: 138 MLELLYATGMRVSELVGLKLDDLHLNSGYLRVFGKGSKQRIIPIGEIAIDTLRDYLARVR 197

Query: 246 AMTPIGK---ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
                 +      F+N   + +    F    K +A +AG+ K  + H +R   AT   + 
Sbjct: 198 PELDRQRNLSPCVFLNRSGKGLTRQGFWKMIKRRALEAGITKNVTPHTLRHSFATHLLEN 257

Query: 301 GATAHELMATYGWKTVDQAETYTK 324
           GA    +    G   +   + YT 
Sbjct: 258 GADLRVVQMLLGHVDISTTQIYTH 281


>gi|291279466|ref|YP_003496301.1| site-specific DNA tyrosine recombinase XerD [Deferribacter
           desulfuricans SSM1]
 gi|290754168|dbj|BAI80545.1| site-specific DNA tyrosine recombinase XerD [Deferribacter
           desulfuricans SSM1]
          Length = 293

 Score =  146 bits (369), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 50/275 (18%), Positives = 102/275 (37%), Gaps = 30/275 (10%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIR--KSGDFDYRKITTK-HIRSGVESRKHTP 130
           L+ EY        L+ N+  ++ S     +   K   +D +   T       +  + ++ 
Sbjct: 12  LVEEY--------LSENTIKAYLSDVKAFLDFVKIKKYDIKSEDTVISYIKNLIKKSYSI 63

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK----SFW 186
            S ++ ++S+ V + + ++++ +  NP L +++PK+  +      ++++ +         
Sbjct: 64  ESILRKISSISVYYDYLIKEKVIDKNPVLLIDKPKKWFKLPDFLNEDEILKILDTVDKST 123

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKL 244
             G +  +    L  SG+R S+     V     +  I  IK  K G    V +    ++ 
Sbjct: 124 PHGFRDYIIINMLYTSGMRISELVNIEVSNCDFRRGIIRIK-GKGGKERFVPIHKKLIEE 182

Query: 245 LA----------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292
           L           +        F+N    K++        +  A  AG+ K  S H  R  
Sbjct: 183 LNKYLEIRHNYFVKGRDNGYLFLNKFGNKLSREYCWKIVRKYAEMAGIKKKVSPHVFRHT 242

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
            AT     GA    +    G  ++   E YT+  D
Sbjct: 243 FATHLLKNGADLRVIQMLLGHSSILTTEIYTQLDD 277


>gi|169827277|ref|YP_001697435.1| tyrosine recombinase xerD [Lysinibacillus sphaericus C3-41]
 gi|168991765|gb|ACA39305.1| Tyrosine recombinase xerD [Lysinibacillus sphaericus C3-41]
          Length = 300

 Score =  146 bits (369), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 49/266 (18%), Positives = 98/266 (36%), Gaps = 27/266 (10%)

Query: 85  GSLAVNS----RISFESYFDQIIRKSGDFDYRKITT----KHIRSGVESRKHTPSSAIQF 136
             L+VN+    R   ESY + +    G  ++  I      +H+       K T  +  + 
Sbjct: 19  RQLSVNTLASYRRDLESYVNFLQNAEGMANFNHIERTTILRHLEQLRVQGK-TSRTIARH 77

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQP 192
           ++S+R   ++ +R++    +P + +E P  + +     + E+++   +       +G + 
Sbjct: 78  ISSIRSFHQFLLREKRAESDPTVHLEMPTIEQKLPNILSIEEIEALLTAPNRSKPQGIRD 137

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKL------- 244
               E L  SG+R S+     +  L   +  ++   K G    + L    +         
Sbjct: 138 LAMLELLYGSGMRISELIALDLADLHLTMGFVRVFGKGGKERIIPLGKSALSAISTYLNN 197

Query: 245 ----LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISA 298
               L       + FFIN   +++         K  A KAG+    + H +R   AT   
Sbjct: 198 ARGQLQGKYPKTDAFFINQRGKRLTRQGCWKLMKEHALKAGIQHELTPHTLRHSFATHLV 257

Query: 299 DAGATAHELMATYGWKTVDQAETYTK 324
           + GA    +    G   +   + YT 
Sbjct: 258 ENGADLRAVQEMLGHADISTTQIYTH 283


>gi|327393403|dbj|BAK10825.1| site-specific recombinase, phage integrase family hypothetical
           protein [Pantoea ananatis AJ13355]
          Length = 337

 Score =  146 bits (369), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 61/336 (18%), Positives = 109/336 (32%), Gaps = 39/336 (11%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHEST--FIPAYMSALTGSTPKREYINSP 64
           +PP V +     GK  Y F   +G  +RL            AY + +  +   + Y    
Sbjct: 13  MPPRVYR-----GKSAYEFHPKNGGAMRLCDLGSPQSKVWAAYEALINETPDIKNY---- 63

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
                  K L   + KS  +  LA  ++  +  Y  +++   GD     I  +HIR  ++
Sbjct: 64  -------KSLAERFFKSPDFYELAAETQKDYRKYSLKVLSVFGDMPSDSIKPEHIRKYMD 116

Query: 125 SRK-HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
            R   + + A +    M  +F+W   +  V  NP   V++ K K       T  +     
Sbjct: 117 KRGLRSRTQANREKAFMSRVFRWGYERGLVKQNPTKGVKQFKEKARDRYV-TDAEYSSLY 175

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
           S   +    ++A E       R +D        + +    IK  KT              
Sbjct: 176 SVAPD--MVKIAMELAYLCCARQADILELKKSQIIDEGILIKQSKTSVSQIKGWSPRLQD 233

Query: 244 LLA-----MTPIGKETFFINND--KQKMNATQFSIWFKAKATKAG-------VNKSAHGV 289
           ++A         G  + F+ +     K     F+  +      A         + + H +
Sbjct: 234 VIAQASTLPLKSGMSSIFVIHQPSGAKYTRDGFNSRWLKAKQDAKAAFPELDFDFTFHDL 293

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           +    +       T  E+    G K V Q   Y + 
Sbjct: 294 KAKGISDLDGNIYTKQEIS---GHKDVKQTARYNRK 326


>gi|24372537|ref|NP_716579.1| integrase/recombinase XerD [Shewanella oneidensis MR-1]
 gi|34222794|sp|Q7ZAJ8|XERD_SHEON RecName: Full=Tyrosine recombinase xerD
 gi|24346549|gb|AAN54024.1|AE015540_4 integrase/recombinase XerD [Shewanella oneidensis MR-1]
          Length = 300

 Score =  146 bits (368), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 51/289 (17%), Positives = 108/289 (37%), Gaps = 28/289 (9%)

Query: 74  LISEYRKSAHW--GSLAVNSRISFE---SYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128
           LI  +     W    L+ N+  ++     +FD+ ++  G    R +    +R+ +  R  
Sbjct: 10  LIDAFLDDL-WSSKGLSDNTLSAYRTDLRHFDRYLQSQG-LRLRDVGQADVRAYLAYRVE 67

Query: 129 T---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
                +S+ + L+S+R  + + ++ + ++ +P   +E PK         ++  + +  + 
Sbjct: 68  QQFARTSSARLLSSLRRFYNYLLQTKQISGDPMAQIESPKLSRHLPDSLSESQVDRLLAE 127

Query: 186 ----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240
                    + +   E L  +GLR S+     ++ +      ++   K G    V + + 
Sbjct: 128 PNVDDPVECRDKAMLELLYATGLRVSELVGLTMEQMSLRQGLVRIIGKGGKERLVPMGEM 187

Query: 241 F----------MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHG 288
                       +   +  I  +  F +   Q M    F    K  A++AG+    S H 
Sbjct: 188 AITEVEHYLTSARHELLGHIQSDVVFPSKRSQMMTRQTFWHRIKLYASRAGIETELSPHT 247

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
           +R   AT   + GA    +    G   +   + YT  A R RL   + +
Sbjct: 248 LRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVA-RARLQELHQQ 295


>gi|59711055|ref|YP_203831.1| site-specific tyrosine recombinase XerD [Vibrio fischeri ES114]
 gi|197335240|ref|YP_002155204.1| tyrosine recombinase XerD [Vibrio fischeri MJ11]
 gi|59479156|gb|AAW84943.1| site-specific tyrosine recombinase [Vibrio fischeri ES114]
 gi|197316730|gb|ACH66177.1| tyrosine recombinase XerD [Vibrio fischeri MJ11]
          Length = 298

 Score =  146 bits (368), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 43/279 (15%), Positives = 103/279 (36%), Gaps = 26/279 (9%)

Query: 73  WLISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFDYR-----KITTKHIRSGVES 125
            L+  +  +  W    L+ N+  S+ +   ++++   D  Y+      +     ++ +  
Sbjct: 6   ALMERFLDTM-WMERGLSENTLASYRNDLVKLLQWLEDNHYKCASISAMGLNEFQAYLVD 64

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +++  +S  + L+++R  F++  R++    +P   +  PK      +  ++E +    + 
Sbjct: 65  KEYKQTSRARMLSALRRFFQYLHREKIRGDDPTALLASPKLPQRLPKDLSEEQVDALLNA 124

Query: 186 ----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDG 240
                    + R   E L  +GLR ++     ++++      ++ T K      V + + 
Sbjct: 125 PNVEDPLELRDRAMLELLYATGLRVTELVSLTMENVSLRQGVVRVTGKGDKERLVPMGEN 184

Query: 241 FMKLLAMTPIGK----------ETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAH 287
            +  +                 +  F +   ++M    F    K  A  AG++    S H
Sbjct: 185 AVDWIEQFLTHGRPMLLGEKSSDVVFPSKRAKQMTRQTFWHRIKHYAVIAGIDSDKLSPH 244

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            +R   AT   + GA    +    G   +   + YT  A
Sbjct: 245 VLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVA 283


>gi|199598714|ref|ZP_03212128.1| Integrase [Lactobacillus rhamnosus HN001]
 gi|229552169|ref|ZP_04440894.1| integrase XerD [Lactobacillus rhamnosus LMS2-1]
 gi|258508373|ref|YP_003171124.1| tyrosine recombinase XerD [Lactobacillus rhamnosus GG]
 gi|258539584|ref|YP_003174083.1| tyrosine recombinase xerD [Lactobacillus rhamnosus Lc 705]
 gi|199590402|gb|EDY98494.1| Integrase [Lactobacillus rhamnosus HN001]
 gi|229314471|gb|EEN80444.1| integrase XerD [Lactobacillus rhamnosus LMS2-1]
 gi|257148300|emb|CAR87273.1| Tyrosine recombinase xerD [Lactobacillus rhamnosus GG]
 gi|257151260|emb|CAR90232.1| Tyrosine recombinase xerD [Lactobacillus rhamnosus Lc 705]
 gi|259649687|dbj|BAI41849.1| integrase [Lactobacillus rhamnosus GG]
          Length = 293

 Score =  146 bits (368), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 42/271 (15%), Positives = 96/271 (35%), Gaps = 23/271 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH--IRSGVESRKHT--PSSAIQFLTSM 140
             LA  +++S++      +    D            I++ ++ +  T  P+S  + ++++
Sbjct: 16  RGLARTTQVSYQQDLTTFMAWLSDQKQTTFPEDFGVIQAFLKHQNDTKAPASVSRMISAL 75

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLAF 196
           R  +++ +R+  +  +P   ++ PK+        +  ++    +        G + R  F
Sbjct: 76  RKFYRFLLREGAIKSDPMTKIDTPKKAQHLPATLSGTEIDALMAKPDTTKPLGLRDRAIF 135

Query: 197 EFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE- 253
           E +  +GLR S+     +   HL  N+  + T K      V +       +         
Sbjct: 136 ELMYATGLRVSEVVGLRLDQLHLAMNLLQV-TGKGDKERLVPISPQAADWVNRYLQESRP 194

Query: 254 ---------TFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302
                      F+N     +         KA     G+ K  + H +R   AT   + GA
Sbjct: 195 RLIKHQQPKAVFVNFHGHALTRQAIWKNLKAYIASVGIEKDVTPHTLRHSFATRLLENGA 254

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGI 333
               +    G   +   + YT  +++  + +
Sbjct: 255 DLRVVQELLGHSDISTTQIYTHLSNQHLVAV 285


>gi|297205885|ref|ZP_06923280.1| tyrosine recombinase XerD [Lactobacillus jensenii JV-V16]
 gi|297149011|gb|EFH29309.1| tyrosine recombinase XerD [Lactobacillus jensenii JV-V16]
          Length = 300

 Score =  146 bits (368), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 45/264 (17%), Positives = 100/264 (37%), Gaps = 26/264 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRK------ITTKHIRSGVESRKHTPSSAIQFLT 138
             L+ N+  S++   +Q I                I   ++    +  K T S+  + +T
Sbjct: 20  RGLSKNTVDSYQLDLNQFIEYLDKEKITDWPEDPLIIDSYLAKQRDEGKKT-STISRGIT 78

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRL 194
           ++R  +++ +RQ  + ++P + ++ PK++       ++++++Q  +        G + R 
Sbjct: 79  TLRRFYRYLLRQHILVVDPLIQIDTPKQEKRLPLALSQKEVEQLLAQPDIKTTTGLRDRA 138

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM------ 247
             E L  +G+R S+        L  ++  I+   K      V + D  +  L        
Sbjct: 139 ILELLYATGMRVSELINLKEADLHTDLKIIRVLGKGSKERLVPVTDFALNWLDKYLKNVR 198

Query: 248 ------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
                   +  +  F+NN   ++         K  +  A ++K  + H +R   AT   +
Sbjct: 199 DPALLKKGVACDFLFLNNRAGQLTRQAVWQSIKKYSKLAKIDKDITPHTLRHTFATHLLE 258

Query: 300 AGATAHELMATYGWKTVDQAETYT 323
            GA    +    G   +   + YT
Sbjct: 259 NGADLRVVQEILGHSDISTTQIYT 282


>gi|256851002|ref|ZP_05556391.1| tyrosine recombinase XerD [Lactobacillus jensenii 27-2-CHN]
 gi|260661214|ref|ZP_05862128.1| tyrosine recombinase XerD [Lactobacillus jensenii 115-3-CHN]
 gi|282932045|ref|ZP_06337503.1| tyrosine recombinase XerD [Lactobacillus jensenii 208-1]
 gi|256616064|gb|EEU21252.1| tyrosine recombinase XerD [Lactobacillus jensenii 27-2-CHN]
 gi|260548151|gb|EEX24127.1| tyrosine recombinase XerD [Lactobacillus jensenii 115-3-CHN]
 gi|281303812|gb|EFA95956.1| tyrosine recombinase XerD [Lactobacillus jensenii 208-1]
          Length = 300

 Score =  146 bits (368), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 45/264 (17%), Positives = 100/264 (37%), Gaps = 26/264 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRK------ITTKHIRSGVESRKHTPSSAIQFLT 138
             L+ N+  S++   +Q I                I   ++    +  K T S+  + +T
Sbjct: 20  RGLSKNTVDSYQLDLNQFIEYLDKEKITDWPEDPLIIDSYLAKQRDEGKKT-STISRGIT 78

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRL 194
           ++R  +++ +RQ  + ++P + ++ PK++       ++++++Q  +        G + R 
Sbjct: 79  TLRRFYRYLLRQHILVVDPLIQIDTPKQEKRLPLALSQKEVEQLLAQPDIKTTTGLRDRA 138

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM------ 247
             E L  +G+R S+        L  ++  I+   K      V + D  +  L        
Sbjct: 139 ILELLYATGMRVSELINLKEADLHTDLKIIRVLGKGSKERLVPVTDFALSWLDKYLKNVR 198

Query: 248 ------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
                   +  +  F+NN   ++         K  +  A ++K  + H +R   AT   +
Sbjct: 199 DPALLKKGVACDFLFLNNRAGQLTRQAVWQSIKKYSKLAKIDKDITPHTLRHTFATHLLE 258

Query: 300 AGATAHELMATYGWKTVDQAETYT 323
            GA    +    G   +   + YT
Sbjct: 259 NGADLRVVQEILGHSDISTTQIYT 282


>gi|228470587|ref|ZP_04055444.1| tyrosine recombinase XerD [Porphyromonas uenonis 60-3]
 gi|228307714|gb|EEK16690.1| tyrosine recombinase XerD [Porphyromonas uenonis 60-3]
          Length = 309

 Score =  146 bits (368), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 54/283 (19%), Positives = 101/283 (35%), Gaps = 24/283 (8%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKH---IRSGVES 125
           + LI  Y+        L+ NS  S+    D++    GD     R++T +H     + +  
Sbjct: 7   QQLIQRYKTYLRLEQHLSDNSIDSYLYDVDKLYTYIGDMGLSLREVTLQHLNNFAAHLLD 66

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ----Q 181
              +  S  + L+ ++  F++   +E +  +P   ++ P    +     T  ++      
Sbjct: 67  LGISMRSLARVLSGVKSFFRFLSLEEEIERDPTDMLQTPPIPKKLPEVLTLAEIDSLLGA 126

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240
                 E S+     E L   GLR S+ C      +  +   +    K      V +   
Sbjct: 127 IDEERPEASRDTAIIEVLYSCGLRVSELCGLTYSDVFLDEGYLHVWGKGRKERLVPMSPK 186

Query: 241 FMKLLA----------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288
            +  +             P   +  FI+   Q ++        +  A  AG++K  S H 
Sbjct: 187 AVSDVQRYLNDPCRYNAKPEYDQYIFISRRGQPISRITVFCLIRTLAELAGIHKEISPHT 246

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           +R   AT   + GA  H +    G +++   E YT   DR  L
Sbjct: 247 LRHSFATHLLEGGADLHAIQLMMGHESIATTEIYTH-VDRTAL 288


>gi|227510303|ref|ZP_03940352.1| site-specific DNA tyrosine recombinase, XerD [Lactobacillus brevis
           subsp. gravesensis ATCC 27305]
 gi|227189955|gb|EEI70022.1| site-specific DNA tyrosine recombinase, XerD [Lactobacillus brevis
           subsp. gravesensis ATCC 27305]
          Length = 295

 Score =  146 bits (368), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 42/263 (15%), Positives = 89/263 (33%), Gaps = 23/263 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDF-----DYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
             L+ N+  S++    + I              +    +    ++  K + ++ I+ ++S
Sbjct: 16  RGLSENTIKSYQQDLSEAIHFFQKTTKDISKVDQFLILNYLENLQQEKKSRNTVIRTVSS 75

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLA 195
           +R  F++  +   V  +P L V+ PK+        +  ++ +  S        G + R  
Sbjct: 76  LRNFFRYLAQFGVVPDDPMLKVDSPKQSKTLPDVLSVSEVNKLLSMPNVSKPLGVRDRAM 135

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPDGFMKL---------- 244
            E L  +GLR S+     +  L   +       K      + + D  +            
Sbjct: 136 LETLYATGLRVSELVNLRLVDLHLPMKLIQTVGKGDRERIIPIGDVAIDWITKYLKTTRI 195

Query: 245 -LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301
            L       +  F+N   +++         K     AG+ +  + H +R   AT   + G
Sbjct: 196 DLLRKRTNTDFVFLNAHGRRLTRQAIWQMIKKYVKLAGIKRHVTPHTLRHSFATHLLENG 255

Query: 302 ATAHELMATYGWKTVDQAETYTK 324
           A    +    G   +   + YT 
Sbjct: 256 ADLRIVQELLGHADISTTQIYTH 278


>gi|306843261|ref|ZP_07475870.1| phage integrase family protein [Brucella sp. BO2]
 gi|306286527|gb|EFM58110.1| phage integrase family protein [Brucella sp. BO2]
          Length = 235

 Score =  146 bits (368), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 46/206 (22%), Positives = 79/206 (38%), Gaps = 7/206 (3%)

Query: 127 KHTPSSAIQFLTSMRVLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
             TP +A   L ++R + +WA   +E ++ +P   V    R+ EG +PWT E +  F   
Sbjct: 6   ADTPGAANNLLDALRAMCRWASGPRELLSRDPTQGVAHF-RQGEGHKPWTPEQL-AFADK 63

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
              G   R A+    Y+G R SD  R G   + +  FS+  +KTG      +       +
Sbjct: 64  NFTG-MLRRAYVLARYTGQRISDVVRLGWTDIDDGGFSLPQKKTGVRPWCPIFPELEAEM 122

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGAT 303
           +        F   ++ +         W         V      HG+R  +      +G +
Sbjct: 123 SKWEKRPGPFLYQDNGRPFTTNLMWKWLNDARKDQPVIEEVVWHGLRANAVIRLRQSGFS 182

Query: 304 AHELMATYGWKTVDQAETYTKGADRI 329
             ++    G  +    E Y++ ADR 
Sbjct: 183 VPQICDAVG-MSPQMVERYSRYADRK 207


>gi|291283208|ref|YP_003500026.1| Site-specific recombinase, phage integrase family [Escherichia coli
           O55:H7 str. CB9615]
 gi|290763081|gb|ADD57042.1| Site-specific recombinase, phage integrase family [Escherichia coli
           O55:H7 str. CB9615]
 gi|320663362|gb|EFX30662.1| Site-specific recombinase, phage integrase family protein
           [Escherichia coli O55:H7 str. USDA 5905]
          Length = 341

 Score =  146 bits (368), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 60/330 (18%), Positives = 108/330 (32%), Gaps = 29/330 (8%)

Query: 6   RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
           +LPP V   +        Y  K   R        ES  + A    L     K E   + R
Sbjct: 12  KLPPKVYPNK------YSYVWKPTSR--------ESVTLTAIEDGLAALWKKYEETVNHR 57

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
            +  T   L  ++  SA++  L+  ++  +  +  +++   G      +  +HIR  ++ 
Sbjct: 58  DRAMTFGRLWEKFLASAYYSELSPRTQKDYLQHQKKLLAVFGKVLADSVKPEHIRRYMDK 117

Query: 126 RKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
           R   + + A    +SM  ++ W   + YV  NPC  V + K K       T ++ Q   S
Sbjct: 118 RGEQSKTQANHEKSSMSRVYSWGYERGYVKANPCAGVSKFKAKNRERYV-TDKEYQAVLS 176

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
                    +A E       R SD      + + N+   I+  KTG             +
Sbjct: 177 VAPV--PVFIAMEIAYLCAARISDVLSLKWEQIGNDGIFIQQGKTGKKQIKAWSPRLQSV 234

Query: 245 LAMTP--IGKETFFINNDKQKMNATQFSIWFKAKATKAG------VNKSAHGVRKFSATI 296
           +              N    +     F+  +      AG       + + H + K     
Sbjct: 235 IEKAKQLPKSAYVISNQYGNRYMYKGFNEMWVEARNLAGQISGIATDFTFHDL-KAKGIS 293

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326
             +   ++ +     G KT  Q   Y +  
Sbjct: 294 DYE--GSSRDKQLFSGHKTEGQVLIYDRKV 321


>gi|260173069|ref|ZP_05759481.1| integrase [Bacteroides sp. D2]
 gi|315921346|ref|ZP_07917586.1| integrase [Bacteroides sp. D2]
 gi|313695221|gb|EFS32056.1| integrase [Bacteroides sp. D2]
          Length = 319

 Score =  146 bits (368), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 52/275 (18%), Positives = 102/275 (37%), Gaps = 24/275 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVESRK 127
           +I +Y++      SL++N+  ++ +  D++     +      D      +   +G+    
Sbjct: 16  IIRKYQQYLKLEKSLSLNTLDAYLTDLDKLMSFLTLEGINVLDVCLSDLQRFAAGLHDIG 75

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
             P S  + L+ ++  F++ + + Y+  +P   +E PK   +     T E++ +  S   
Sbjct: 76  IHPRSQARILSGIKSFFRFLILENYLEADPSELLEGPKIGFKLPEVLTVEEIDRIISAVD 135

Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-VELPDGFM 242
               EG + R   E L   GLR S+     +  L  +   IK +  G+    V +    +
Sbjct: 136 RSKAEGQRNRAILETLYSCGLRVSELITLKLSDLYFDEGFIKVEGKGSKQRLVPISPRAI 195

Query: 243 KLLAMTPIG-----------KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289
             + +                  F      + ++        K  A KAG+ K  S H  
Sbjct: 196 NEIKLYITDRNQIEVKKGHEDFVFVSQRRGKGLSRIMIFHMIKELAQKAGITKNISPHTF 255

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           R   AT   + GA    +    G +++   E YT 
Sbjct: 256 RHSFATHLLEGGANLRAIQCMLGHESIATTEIYTH 290


>gi|126650133|ref|ZP_01722366.1| site-specific tyrosine recombinase XerD [Bacillus sp. B14905]
 gi|126593305|gb|EAZ87267.1| site-specific tyrosine recombinase XerD [Bacillus sp. B14905]
          Length = 300

 Score =  146 bits (368), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 48/266 (18%), Positives = 99/266 (37%), Gaps = 27/266 (10%)

Query: 85  GSLAVNS----RISFESYFDQIIRKSGDFDYRKITT----KHIRSGVESRKHTPSSAIQF 136
             L+VN+    R   ESY + +    G  D+ ++      +H+       K T  +  + 
Sbjct: 19  RQLSVNTLASYRRDLESYVNFLQNAEGMADFNRVERTTILRHLEQLRAQGK-TSRTIARH 77

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQP 192
           ++S+R   ++ +R++    +P + +E P  + +     + E+++   +       +G + 
Sbjct: 78  ISSIRSFHQFLLREKRAESDPTVHLEMPTIEQKLPNILSIEEIEALLTAPNRSKPQGIRD 137

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKL------- 244
               E L  SG+R S+     +  +   +  ++   K G    + L    +         
Sbjct: 138 LAMLELLYGSGMRISELIALDLADIHLTMGFVRVFGKGGKERIIPLGKSALSAISTYLNN 197

Query: 245 ----LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISA 298
               L       + FFIN   +++         K  A KAG+    + H +R   AT   
Sbjct: 198 ARGQLQGKYPKTDAFFINQRGKRLTRQGCWKLMKEHALKAGIQHELTPHTLRHSFATHLV 257

Query: 299 DAGATAHELMATYGWKTVDQAETYTK 324
           + GA    +    G   +   + YT 
Sbjct: 258 ENGADLRAVQEMLGHADISTTQIYTH 283


>gi|301154937|emb|CBW14400.1| site-specific tyrosine recombinase [Haemophilus parainfluenzae
           T3T1]
          Length = 297

 Score =  146 bits (368), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 46/270 (17%), Positives = 95/270 (35%), Gaps = 24/270 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGVESRKHTPSSAIQFLTS 139
             L+ N+  S+      +       +        +  +        + +  +S  + L++
Sbjct: 18  KGLSENTVQSYRLDLTALCDWLDKQNLSLETLEPLDLQQFLGSRLEQGYKATSTARMLSA 77

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FWSEGSQPRLA 195
           MR LF++  R++Y   +P   +  PK  +   +  T++ +    +          + +  
Sbjct: 78  MRKLFQYLYREKYRTDDPSAVLSSPKLPSRLPKYLTEQQVTDLLNTPDVEIPLELRDKAM 137

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKL-----LAMTP 249
            E L  +GLR ++     ++++      ++   K      V + +          L   P
Sbjct: 138 LELLYATGLRVTELVTLTIENMNLQQGVVRVIGKGNKERIVPMGEEAAFWVRQFVLYGRP 197

Query: 250 I-----GKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG 301
           I       +  F +   Q+M    F    K  A  AG++    S H +R   AT   + G
Sbjct: 198 ILLNGQSSDVVFPSQRAQQMTRQTFWHRIKHYAILAGIDTDALSPHVLRHAFATHLVNHG 257

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRL 331
           A    +    G   +   + YT  A + RL
Sbjct: 258 ADLRVVQMLLGHSDLSTTQIYTHVA-KERL 286


>gi|297539666|ref|YP_003675435.1| tyrosine recombinase XerD [Methylotenera sp. 301]
 gi|297259013|gb|ADI30858.1| tyrosine recombinase XerD [Methylotenera sp. 301]
          Length = 302

 Score =  146 bits (368), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 51/268 (19%), Positives = 98/268 (36%), Gaps = 24/268 (8%)

Query: 86  SLAVNSRISFESYFDQII--RKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTSMR 141
            L+ N+  S+              +     +    I+  +  +  +  P S  + + SMR
Sbjct: 26  GLSKNTLESYRLDLTSFAYWLTPQNKQLLTVDQADIQQYLAVKFPQSQPRSISRLIASMR 85

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FWSEGSQPRLAFE 197
             +++ +R   ++++P + ++ PK      +   +E++    +      + G + R   E
Sbjct: 86  RFYRYLMRDNKISLDPTIQIQSPKLPRSLPKSLNEEEVIALLNAPNIVEAAGLRDRAMLE 145

Query: 198 FLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK--- 252
            L   GLR S+     V  +   + +  I T K      V + +  +  ++         
Sbjct: 146 LLYACGLRVSELVGVKVTEVSVSDGVVRI-TGKGSKTRLVPMGEEAVDWISRYLSDARSA 204

Query: 253 -------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGAT 303
                  +  F+ N  + M    F    K  A  AG+NK  S H +R   AT   + GA 
Sbjct: 205 ILQKRLCDALFVTNRGEAMTRQAFWYLIKRYALLAGINKHMSPHVLRHAFATHLLNHGAD 264

Query: 304 AHELMATYGWKTVDQAETYTKGADRIRL 331
              +    G   +   + YT  A R RL
Sbjct: 265 LRVVQMLLGHSDISTTQIYTHVA-RERL 291


>gi|308069572|ref|YP_003871177.1| Tyrosine recombinase xerD [Paenibacillus polymyxa E681]
 gi|305858851|gb|ADM70639.1| Tyrosine recombinase xerD [Paenibacillus polymyxa E681]
          Length = 317

 Score =  146 bits (368), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 42/283 (14%), Positives = 101/283 (35%), Gaps = 32/283 (11%)

Query: 76  SEYRKSAHWGSLAVNSRISFESY---FDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132
            +Y +      L+ ++  +++     F +     G      +   H+   +   K    +
Sbjct: 12  VQYME--EEKGLSRSTLEAYQRDVQQFAEFAESCGIEQPDNVQRSHLVLYLGRLKEQGKA 69

Query: 133 A---IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---- 185
           A    + + S+R  F + +R+     +P + +E PK   +     T++++++        
Sbjct: 70  AATISRSVASIRSFFHFLIREGITIHDPSVLLELPKATKKKPSVLTQDEIERLLDAPDVT 129

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK-TGTIITVELPDGFMKL 244
             +G + +   E L  +G+R S+     V+ ++ ++  +      G    V +     + 
Sbjct: 130 APQGVRDKAMLELLYATGIRVSELIALNVRDVRTDLRFVHCGGEAGKERVVPISREASQW 189

Query: 245 LAM-----------------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKS 285
                                 + +E  F+N   Q+++   F    K    +AG+  + +
Sbjct: 190 AQAYMDEQRLLLLKSGQGEEAQVEQEAMFLNVSGQRLSRQGFWKMIKKYGQEAGISEDIT 249

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
            H +R   A    + GA    +    G   +   + Y + A R
Sbjct: 250 PHTLRHSFAVHMLEGGADLRSVQEMLGHADLSTTQVYAQTARR 292


>gi|257876556|ref|ZP_05656209.1| phage integrase [Enterococcus casseliflavus EC20]
 gi|257810722|gb|EEV39542.1| phage integrase [Enterococcus casseliflavus EC20]
          Length = 296

 Score =  146 bits (368), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 42/264 (15%), Positives = 95/264 (35%), Gaps = 24/264 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH------IRSGVESRKHTPSSAIQFLT 138
             L+ N+R S++    Q +         +               ++    + ++ I+ ++
Sbjct: 16  RGLSQNTRASYQRDLQQYLAFLQKKQVTQWQQIDRVIVLSFLQSLQEAGKSSATVIRMVS 75

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KSFWSEGSQPRL 194
           S+R   ++  ++     +P   ++ PK++ +     + +++++      +    G + R 
Sbjct: 76  SLRRFHQYLRQERLTDHDPMQHIDSPKKQQKLPDTLSLQEVERLIETPDTRAVLGIRDRA 135

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPD-----------GFM 242
             E +  +GLR S+     +  L  ++  +  T K      V L D              
Sbjct: 136 ILEVMYATGLRVSELIGLKLNDLHLSMGLLQTTGKGDKERIVPLGDLAIQWIETYLSDAR 195

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
             L      +   F+NN   +++        KA   +AG+ K  + H +R   AT   + 
Sbjct: 196 PYLTRKTPDESHLFVNNHGTQLSRQGIWKNLKALVRQAGITKNVTPHTLRHSFATHLLEN 255

Query: 301 GATAHELMATYGWKTVDQAETYTK 324
           GA    +    G   +   + YT 
Sbjct: 256 GADLRTVQELLGHADISTTQIYTH 279


>gi|15895336|ref|NP_348685.1| XerD family integrase/recombinase [Clostridium acetobutylicum ATCC
           824]
 gi|34222991|sp|Q97HE5|XERD_CLOAB RecName: Full=Tyrosine recombinase xerD
 gi|15025053|gb|AAK80025.1|AE007709_9 Integrase/recombinase XerD family [Clostridium acetobutylicum ATCC
           824]
 gi|325509481|gb|ADZ21117.1| Integrase/recombinase XerD family [Clostridium acetobutylicum EA
           2018]
          Length = 292

 Score =  145 bits (367), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 46/282 (16%), Positives = 101/282 (35%), Gaps = 20/282 (7%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF-----DYRKITTKHIRSGVESR 126
             LI +Y       +L++N+  ++     +      +      +   IT       ++  
Sbjct: 2   DNLIEQYFAEIRKKNLSLNTIDAYRRDIKKFHEFLDEKGEKLREVDVITIMSYVQYLQKN 61

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK--- 183
               SS ++ + S+R  FK+   +  +  NP    E PK +       T E++++     
Sbjct: 62  GRANSSIVRNIVSIRNFFKYLEIKGIMDDNPVTQYEMPKIRRNFPDILTIEEVEKLLMGP 121

Query: 184 -SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ--KTGTII------T 234
                +G + +   E +  +G++ ++     +  +   +  IK +  K    I       
Sbjct: 122 DGNTDKGIRDKAMLEIMYATGMKVTELLNLTIYDINLKLSYIKCRGIKNKERIIPMGSYA 181

Query: 235 VELPDGFMKLLAMTPIGK-ETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRK 291
           V+  + ++K+     +   +  F N    KM    F    K  A ++G+ K   A+ +R 
Sbjct: 182 VKCLEIYLKVRTKLNVQNIDYLFFNLQGDKMTRQGFWKIIKQYAQESGIKKKINAYTLRH 241

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
             A      GA    +    G   +   + Y+    + R+  
Sbjct: 242 SFAVHLLQNGADIKTIQELLGHSDMATTQIYSGMYRKTRIAE 283


>gi|56420850|ref|YP_148168.1| site-specific tyrosine recombinase XerD [Geobacillus kaustophilus
           HTA426]
 gi|56380692|dbj|BAD76600.1| integrase/recombinase [Geobacillus kaustophilus HTA426]
          Length = 298

 Score =  145 bits (367), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 45/266 (16%), Positives = 102/266 (38%), Gaps = 26/266 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFD-------YRKITTKHIRSGVESRKHTPSSAIQFL 137
            +LA N+ +S+E    + +R     +         ++   H    +  +  +  +  + L
Sbjct: 16  RNLAHNTIVSYERDLKKYVRYLRQVEQLQAWGEVERLHILHFLKFLSEQGQSARTIARHL 75

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPR 193
            S+R   ++ +R++  A +P + +E P+ +    +  + E+++   +        G + +
Sbjct: 76  ASIRSFHQFLLREKIAAQDPTVHIETPQFERTLPKVLSVEEVEALLAAPQVSTPFGLRDK 135

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-------------ELPDG 240
              E L  +G+R S+  +  +  +   +  ++    G    +              L  G
Sbjct: 136 AMLELLYATGMRVSELVQLNLSDVHLTMGFVRCYGKGRKERIVPIGRMAIEALAHYLERG 195

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISA 298
             +L+       E  F+N+  Q++    F    K  A +AG+ K  + H +R   AT   
Sbjct: 196 RPQLVNPRRRATEALFLNHYGQRLTRQGFWKILKRLAKEAGIEKELTPHTLRHSFATHLL 255

Query: 299 DAGATAHELMATYGWKTVDQAETYTK 324
           + GA    +    G   +   + YT 
Sbjct: 256 ENGADLRAVQELLGHADISTTQMYTH 281


>gi|56963547|ref|YP_175278.1| site-specific tyrosine recombinase [Bacillus clausii KSM-K16]
 gi|56909790|dbj|BAD64317.1| site-specific tyrosine recombinase [Bacillus clausii KSM-K16]
          Length = 297

 Score =  145 bits (367), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 46/263 (17%), Positives = 99/263 (37%), Gaps = 23/263 (8%)

Query: 85  GSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLT 138
             L+ N+  S+          ++K G   + K+    ++  + + K T    ++  + +T
Sbjct: 18  KGLSPNTIESYARDLKQYGAYLKKRGIDQFAKVDRSTLQHYLFTLKETGKSSATIARNVT 77

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194
           ++R L ++  R+++   +P L +E P+   +     + E++    +        G + + 
Sbjct: 78  TLRALHQFLYREKWTDHDPTLWIETPRIDKKLPGVLSIEEVDALLAAPDSSTPFGVRNKA 137

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM------ 247
             E L  SG+R ++    G+  +  ++  ++   K      V L     K L        
Sbjct: 138 MLELLYASGMRVTELISLGLDDVHLSMGFVRVIGKGNKERIVPLGKEATKALNTYLERGR 197

Query: 248 ----TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301
                    +  F+N+  + ++   F    K  A  A + K  S H +R   AT   + G
Sbjct: 198 GALLKHERHDKLFVNHHGRPISRQGFWKIMKQLAKTANIEKDFSPHTLRHSFATHLLENG 257

Query: 302 ATAHELMATYGWKTVDQAETYTK 324
           A    +    G   +   + YT 
Sbjct: 258 ADLRSVQEMLGHADLSTTQIYTH 280


>gi|138895887|ref|YP_001126340.1| site-specific tyrosine recombinase XerD [Geobacillus
           thermodenitrificans NG80-2]
 gi|196248777|ref|ZP_03147477.1| tyrosine recombinase XerD [Geobacillus sp. G11MC16]
 gi|134267400|gb|ABO67595.1| DNA integration/recombination/invertion protein [Geobacillus
           thermodenitrificans NG80-2]
 gi|196211653|gb|EDY06412.1| tyrosine recombinase XerD [Geobacillus sp. G11MC16]
          Length = 298

 Score =  145 bits (367), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 45/266 (16%), Positives = 103/266 (38%), Gaps = 26/266 (9%)

Query: 85  GSLAVNSRISFES-------YFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFL 137
            +LA N+ IS+E        Y  ++ +     +  ++   H    +  +  +  +  + L
Sbjct: 16  RNLAHNTIISYERDLKKYVHYLREVEQLEAWGEVERLHILHFLKFLSEQGQSARTIARHL 75

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPR 193
            S+R   ++ +R++  A +P + +E P+ +    +  + E+++   +        G + +
Sbjct: 76  ASIRSFHQFLLREKMAAQDPTVHIETPQFERTLPKVLSVEEVEALLAAPQTNTPFGLRDK 135

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM----- 247
              E L  +G+R S+  +  +  +   +  ++   K      V +    ++ LA      
Sbjct: 136 AMLEVLYATGMRVSELVQLNLGDVHLTMGFVRCYGKGRKERIVPIGRMALEALARYLEYG 195

Query: 248 -------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISA 298
                       E  F+N+  Q++    F    K  + +AG+ K  + H +R   AT   
Sbjct: 196 RPQLVNPRKRATEALFLNHYGQRLTRQGFWKILKRLSKEAGIEKELTPHTLRHSFATHLL 255

Query: 299 DAGATAHELMATYGWKTVDQAETYTK 324
           + GA    +    G   +   + YT 
Sbjct: 256 ENGADLRAVQELLGHADISTTQMYTH 281


>gi|34222990|sp|Q93C64|XERD_LACCA RecName: Full=Tyrosine recombinase xerD
 gi|15778434|gb|AAL07436.1|AF413208_1 tyrosine recombinase [Lactobacillus casei]
          Length = 293

 Score =  145 bits (367), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 42/271 (15%), Positives = 96/271 (35%), Gaps = 23/271 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH--IRSGVESRKHT--PSSAIQFLTSM 140
             LA  +++S++      +    D            I++ ++ +  T  P+S  + ++++
Sbjct: 16  RGLARTTQVSYQQDLTTFMAWLSDQKQTTFPEDFGVIQAFLKHQNDTKAPASVSRMISAL 75

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLAF 196
           R  +++ +R+  +  +P   ++ PK+        +  ++    +        G + R  F
Sbjct: 76  RKFYRFLLREGAIKSDPMTKIDTPKKAQHLPATLSGTEIDALMAKPDTTKPLGLRDRAIF 135

Query: 197 EFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE- 253
           E +  +GLR S+     +   HL  N+  + T K      V +       +         
Sbjct: 136 ELMYATGLRVSEVVGLRLDQLHLAMNLLQV-TGKGDKERLVPISPQAADWVNRYLQESRP 194

Query: 254 ---------TFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302
                      F+N     +         KA     G+ K  + H +R   AT   + GA
Sbjct: 195 RLIKHQQPKAVFVNFHGHALTRQVIWKNLKAYIASVGIEKDVTPHTLRHSFATRLLENGA 254

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGI 333
               +    G   +   + YT  +++  + +
Sbjct: 255 DLRVVQELLGHSDISTTQIYTHLSNQHLVAV 285


>gi|227524454|ref|ZP_03954503.1| site-specific DNA tyrosine recombinase XerD [Lactobacillus
           hilgardii ATCC 8290]
 gi|227088413|gb|EEI23725.1| site-specific DNA tyrosine recombinase XerD [Lactobacillus
           hilgardii ATCC 8290]
          Length = 295

 Score =  145 bits (367), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 41/263 (15%), Positives = 88/263 (33%), Gaps = 23/263 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDF-----DYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
             L+ N+   ++    + I              +    +    ++  K + ++ I+ ++S
Sbjct: 16  RGLSENTIKGYQQDLSEAIHFFQKTTKDISKVDQFLILNYLENLQQEKKSRNTVIRTVSS 75

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLA 195
           +R  F++  +   V  +P L V+ PK+        +  ++ +  S        G + R  
Sbjct: 76  LRNFFRYLAQFGVVPDDPMLKVDSPKQSKTLPDVLSVSEVNKLLSMPNVSKPLGVRDRAM 135

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPDGFMKL---------- 244
            E L  +GLR S+     +  L   +       K      + + D  +            
Sbjct: 136 LETLYATGLRVSELVNLRLVDLHLPMKLIQTVGKGDRERIIPIGDVAIDWITQYLKTTRI 195

Query: 245 -LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301
            L       +  F+N   +++         K     AG+ +  + H +R   AT   + G
Sbjct: 196 DLLRKRTNTDFVFLNAHGRRLTRQAIWQMIKKYVKLAGIKRHVTPHTLRHSFATHLLENG 255

Query: 302 ATAHELMATYGWKTVDQAETYTK 324
           A    +    G   +   + YT 
Sbjct: 256 ADLRIVQELLGHADISTTQIYTH 278


>gi|206890528|ref|YP_002247908.1| tyrosine recombinase XerD [Thermodesulfovibrio yellowstonii DSM
           11347]
 gi|206742466|gb|ACI21523.1| tyrosine recombinase XerD [Thermodesulfovibrio yellowstonii DSM
           11347]
          Length = 294

 Score =  145 bits (367), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 53/266 (19%), Positives = 106/266 (39%), Gaps = 20/266 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGVESRKHTPSSAIQFLTS 139
            +L++N+  S+E+     ++   + +      +K         ++ + ++ +S  + L+S
Sbjct: 18  KALSINTVKSYENDLKNFLKWLTEQNILVLNCKKDDIVQYLLNLKEKAYSSTSIARILSS 77

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE---GSQPRLAF 196
           ++  F++ +    +  +P   ++ PK      +    +++++  S   E     +     
Sbjct: 78  LKQFFRFMIFDSIINHDPTEGLKSPKLWLRLPKALEIDEVKRLLSVMLESKYYLRDIAML 137

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDG--------FMKLLAM 247
           E +  SGLR S+  R  +  +      I+ +  G     V +            +KL  +
Sbjct: 138 ELMYASGLRVSELVRLKLSDINFEAGFIRVKGKGDKERVVPIAQRSIDKIKNYLVKLRPV 197

Query: 248 T--PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAH 305
                  E  F+NN  Q M   +F    KA    AGVN + H +R   AT   + GA   
Sbjct: 198 LLKKKASEYVFLNNRGQPMTRQRFWQNIKAIGRIAGVNVTPHMIRHSFATHLLEGGADLR 257

Query: 306 ELMATYGWKTVDQAETYTKGA-DRIR 330
            L    G   +   + YTK + DR+R
Sbjct: 258 SLQKMLGHSDISTTQIYTKVSMDRLR 283


>gi|270264904|ref|ZP_06193168.1| DNA integration/recombination/invertion protein [Serratia odorifera
           4Rx13]
 gi|270041202|gb|EFA14302.1| DNA integration/recombination/invertion protein [Serratia odorifera
           4Rx13]
          Length = 299

 Score =  145 bits (367), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 47/280 (16%), Positives = 96/280 (34%), Gaps = 26/280 (9%)

Query: 72  KWLISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGVE 124
             LI ++   A W   +LA N+  S+      +       +      + +  +   +   
Sbjct: 6   SALIEQFL-DALWLERNLAENTLASYRLDLQALSAWLNHQNTSLLQAQALDLQAFLAERV 64

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
           +  +  +S+ + L++MR LF++  R++    +P   +  PK      +  ++  +     
Sbjct: 65  AGGYKATSSARLLSAMRRLFQYLYREKLREDDPTALLASPKLPQRLPKDLSEAQVDALLQ 124

Query: 185 F----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPD 239
                     + +   E L  +GLR S+     +  +      ++   K      V L +
Sbjct: 125 APCVDQPLELRDKAMLEVLYATGLRVSELVGLTISDVSLRQGVVRVIGKGNKERLVPLGE 184

Query: 240 GFMKLLAMTPIGKETFFIN----------NDKQKMNATQFSIWFKAKATKAGVN---KSA 286
             +  +         + +N          N  Q+M    F    K  A  AG++    S 
Sbjct: 185 EAVYWIENYLEHGRPWMVNGQALDVLFPSNRCQQMTRQTFWHRIKHYAILAGIDSERLSP 244

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           H +R   AT   + GA    +    G   +   + YT  A
Sbjct: 245 HVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA 284


>gi|145638777|ref|ZP_01794386.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae
           PittII]
 gi|148827463|ref|YP_001292216.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae
           PittGG]
 gi|145272372|gb|EDK12280.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae
           PittII]
 gi|148718705|gb|ABQ99832.1| tyrosine recombinase [Haemophilus influenzae PittGG]
 gi|309750267|gb|ADO80251.1| Site-specific, tyrosine recombinase XerD [Haemophilus influenzae
           R2866]
          Length = 297

 Score =  145 bits (367), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 47/282 (16%), Positives = 98/282 (34%), Gaps = 26/282 (9%)

Query: 73  WLISEYRKSAHW--GSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVESR-- 126
            LI  +     W    L+ N+  S+      +       D     +   H++  +  R  
Sbjct: 5   ALIDLFLNEY-WIEKGLSENTVQSYRLDLTALCDWLDKNDLSLETLDAVHLQGFLGERLE 63

Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS- 184
             +  +S  + L+++R LF++  R++Y   +P   +  PK  +   +  T++ +    + 
Sbjct: 64  KGYKATSTARMLSAIRKLFQYLYREKYRVDDPSAVLSSPKLPSRLPKYLTEQQVSDLLNT 123

Query: 185 ---FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240
                    + +   E L  +GLR ++     ++++      ++   K      V + + 
Sbjct: 124 PDVEVPLELRDKAMLELLYATGLRVTELVSLTIENMSVQQGVVRVIGKGNKERIVPMGEE 183

Query: 241 FMKL-----LAMTPI-----GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAH 287
                    L   P+       +  F +   Q+M    F    K  A  A ++    S H
Sbjct: 184 AAYWVRQFMLYGRPVLLNGQSSDVVFPSQRTQQMTRQTFWHRVKHYAILADIDADALSPH 243

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            +R   AT   + GA    +    G   +   + YT  A   
Sbjct: 244 VLRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKER 285


>gi|325571148|ref|ZP_08146720.1| integrase/recombinase XerD [Enterococcus casseliflavus ATCC 12755]
 gi|325156233|gb|EGC68419.1| integrase/recombinase XerD [Enterococcus casseliflavus ATCC 12755]
          Length = 296

 Score =  145 bits (367), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 42/264 (15%), Positives = 96/264 (36%), Gaps = 24/264 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH------IRSGVESRKHTPSSAIQFLT 138
             L+ N+R S++    Q +         +               ++    + ++ I+ ++
Sbjct: 16  RGLSQNTRASYQRDLQQYLAFLQKKQVTQWQQIDRVIVLSFLQSLQEAGKSSATVIRMVS 75

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KSFWSEGSQPRL 194
           S+R   ++  ++ +   +P   ++ PK++ +     + +++++      +    G + R 
Sbjct: 76  SLRRFHQFLRQERFTDHDPMQHIDSPKKQQKLPDTLSLQEVERLIETPDTRAVLGIRDRA 135

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPD-----------GFM 242
             E +  +GLR S+     +  L  ++  +  T K      V L D              
Sbjct: 136 ILEVMYATGLRVSELIGLKLNDLHLSMGLLQTTGKGDKERIVPLGDLAIQWIETYLSDAR 195

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
             L      +   F+NN   +++        KA   +AG+ K  + H +R   AT   + 
Sbjct: 196 PYLTRKTPDESHLFVNNHGTQLSRQGIWKNLKALVRQAGITKNVTPHTLRHSFATHLLEN 255

Query: 301 GATAHELMATYGWKTVDQAETYTK 324
           GA    +    G   +   + YT 
Sbjct: 256 GADLRTVQELLGHADISTTQIYTH 279


>gi|115352658|ref|YP_774497.1| site-specific tyrosine recombinase XerD [Burkholderia ambifaria
           AMMD]
 gi|115282646|gb|ABI88163.1| tyrosine recombinase XerD [Burkholderia ambifaria AMMD]
          Length = 322

 Score =  145 bits (367), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 49/268 (18%), Positives = 91/268 (33%), Gaps = 22/268 (8%)

Query: 85  GSLAVNSRISFES---YFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSSAIQFLTSM 140
             LA N+  ++      F Q +  + D          +   + +R     +S+ + L+  
Sbjct: 45  HGLARNTLDAYRRDLVLFSQWLAATHDVPLDSADEAMLIGYIAARSDGKATSSNRRLSVF 104

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAF 196
           R  + WAVR+ + + +P L +   K+        ++  ++        G+    + R   
Sbjct: 105 RRYYGWAVREHHASADPTLRITSAKQAARFPSTLSEAQVEALLGAPDIGTPLGLRDRTML 164

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLLAM 247
           E +  SGLR S+        +  N   ++    G+   +          +          
Sbjct: 165 ELMYASGLRVSELVTLKTVEVGLNEGVVRVMGKGSKERLVPFGEVAHGWIERYLRDARPA 224

Query: 248 T--PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGAT 303
                  +  F+      M   QF    K  A +A V  + S H +R   AT   + GA 
Sbjct: 225 LLGARAADALFVTARGDGMTRQQFWNIIKRHAQQADVRAHLSPHTLRHAFATHLLNHGAD 284

Query: 304 AHELMATYGWKTVDQAETYTKGADRIRL 331
              +    G   +   + YT  A R RL
Sbjct: 285 LRVVQLLLGHSDISTTQIYTHVA-RERL 311


>gi|295706488|ref|YP_003599563.1| tyrosine recombinase XerD [Bacillus megaterium DSM 319]
 gi|294804147|gb|ADF41213.1| tyrosine recombinase XerD [Bacillus megaterium DSM 319]
          Length = 297

 Score =  145 bits (367), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 40/272 (14%), Positives = 98/272 (36%), Gaps = 26/272 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFD-------YRKITTKHIRSGVESRKHTPSSAIQFL 137
             LA N+  S+E       +     +         ++   +    +  ++ +  +  + +
Sbjct: 16  RGLAKNTIDSYERDLKNYAQYLEHVEQLKSFNEVTRLHIVNFLKYLSDQQKSSKTIARHV 75

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ----FKSFWSEGSQPR 193
            S R   ++ +R++    +P + ++ P+ + +  +    E+++     F +    G + +
Sbjct: 76  ASTRSFHQFLLREKAADTDPSVHIDTPQLERKLPKVLNAEEVEALLNVFDTSTPFGIRDK 135

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMK- 243
              E L  +G+R S+     +      +  I+    G    +          + D     
Sbjct: 136 AMLELLYATGIRVSELVNLNIDDAHLTMGFIRCIGKGNKERIVPIGRLATEAIEDYLQHS 195

Query: 244 --LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
             +L       +  F+N+  +++    F    K  A++A + K  + H +R   AT   +
Sbjct: 196 RSVLTKQKEQDKALFVNHHGRRLTRQGFWKILKKLASEAKIEKELTPHTLRHSFATHLLE 255

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            GA    +    G   +   + YT    + RL
Sbjct: 256 NGADLRAVQEMLGHADISTTQIYTH-VTKARL 286


>gi|160876749|ref|YP_001556065.1| tyrosine recombinase XerD [Shewanella baltica OS195]
 gi|160862271|gb|ABX50805.1| tyrosine recombinase XerD [Shewanella baltica OS195]
          Length = 309

 Score =  145 bits (367), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 51/275 (18%), Positives = 102/275 (37%), Gaps = 23/275 (8%)

Query: 85  GSLAVNSRISFE---SYFDQIIRKSGD--FDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
             L+ N+  ++     +FD+   + G       +   +   +    +    +S+ + L+S
Sbjct: 31  KGLSDNTLSAYRTDLRHFDRYQAQQGVTLLSVSQADVRAYLAFRVEQDFARTSSARLLSS 90

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195
           +R  + + V+ + ++ +P   VE PK         ++  + +  S      +   + +  
Sbjct: 91  LRRFYTYLVQTKQISADPMALVESPKLTRHLPDSLSESQVDRLLSEPNVEDAVECRDKAM 150

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPD-------GFMKLLAM 247
            E L  +GLR S+     ++ +      ++   K G    V L +        +MK    
Sbjct: 151 LELLYATGLRVSELVGLTMEQMSLRQGLVRIVGKGGKERLVPLGELAITEVESYMKFARQ 210

Query: 248 TPIGK---ETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGA 302
             +G    +  F +   Q M    F    K  A +AG+    S H +R   AT   + GA
Sbjct: 211 ELLGNKQSDVVFPSKRGQMMTRQTFWHRIKLYALRAGIETALSPHTLRHAFATHLLNHGA 270

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
               +    G   +   + YT  A R RL   + +
Sbjct: 271 DLRVVQLLLGHSDLSTTQIYTHVA-RARLQELHQQ 304


>gi|157692850|ref|YP_001487312.1| site-specific tyrosine recombinase XerD [Bacillus pumilus SAFR-032]
 gi|157681608|gb|ABV62752.1| tyrosine recombinase [Bacillus pumilus SAFR-032]
          Length = 296

 Score =  145 bits (367), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 40/264 (15%), Positives = 104/264 (39%), Gaps = 24/264 (9%)

Query: 85  GSLAVNSRISFESYFDQII------RKSGD-FDYRKITTKHIRSGVESRKHTPSSAIQFL 137
             L+ N+ +S++      +       +  D  D  ++   H    ++    +  ++++ L
Sbjct: 16  RGLSENTIVSYKRDLQNYLSFLMTHEQLSDIKDVTRLHIIHYLKQLKEEGKSSKTSVRHL 75

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPR 193
           +S+R   ++ +R++    +P  ++E  K + +  +  +  ++++     ++ +    + +
Sbjct: 76  SSIRSFHQFLLREKVTKDDPSWNIETQKTERKLPKVLSLGEVEKLLDTPNQHTPFDYRDK 135

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLA------ 246
              E L  +G+R S+     +  +   +  I+   K      V + +     +       
Sbjct: 136 AMLELLYATGIRVSEMLDLTLADVHLTMGFIRCFGKGRKERIVPIGEAAASAIEEYLEKG 195

Query: 247 ----MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
               +     +  F+N+  +KM+   F    K +A +AG+ K  + H +R   AT   + 
Sbjct: 196 RGKLLKKQPADALFLNHHGKKMSRQGFWKNLKKRALEAGIQKELTPHTLRHSFATHLLEN 255

Query: 301 GATAHELMATYGWKTVDQAETYTK 324
           GA    +    G   +   + YT 
Sbjct: 256 GADLRAVQEMLGHADISTTQIYTH 279


>gi|262274923|ref|ZP_06052734.1| site-specific recombinase XerD [Grimontia hollisae CIP 101886]
 gi|262221486|gb|EEY72800.1| site-specific recombinase XerD [Grimontia hollisae CIP 101886]
          Length = 298

 Score =  145 bits (366), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 48/279 (17%), Positives = 102/279 (36%), Gaps = 26/279 (9%)

Query: 73  WLISEYRKSAHW--GSLAVNSRISFESYFDQII---RKSGDF--DYRKITTKHIRSGVES 125
            L+ ++   A W    L+ N+  S+ +   ++     K G+          +  +  +  
Sbjct: 6   ALVEQFL-DAMWMERGLSENTLASYRNDLTKLCQWLDKDGELLVTVACSKLQEYQHWLFD 64

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
             +  SS  + L++MR LF++  R++    +P  ++  PK      +  ++  ++     
Sbjct: 65  LNYKQSSRARMLSAMRRLFQYLYREKLREDDPTATLISPKLPKRLPKDLSEAQVEALLDA 124

Query: 186 WS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240
            +       + +   E L  +GLR ++      +++      ++   K G    V + + 
Sbjct: 125 PNVEDVIELRDKAMLELLYATGLRVTELISLTTENVSLRQGVVRVIGKGGKERLVPMGEA 184

Query: 241 FMKLL-----AMTPI-----GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAH 287
            ++ L        P        + FF +   + M    F    K  A  AG++    S H
Sbjct: 185 AIEWLEHYMAHSRPALLGEQSSDVFFPSRRARMMTRQTFWHRIKFYAALAGIDGEMLSPH 244

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            +R   AT   + GA    +    G   +   + YT  A
Sbjct: 245 VLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA 283


>gi|237721804|ref|ZP_04552285.1| integrase [Bacteroides sp. 2_2_4]
 gi|299144803|ref|ZP_07037871.1| tyrosine recombinase XerD [Bacteroides sp. 3_1_23]
 gi|229448673|gb|EEO54464.1| integrase [Bacteroides sp. 2_2_4]
 gi|298515294|gb|EFI39175.1| tyrosine recombinase XerD [Bacteroides sp. 3_1_23]
          Length = 319

 Score =  145 bits (366), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 52/275 (18%), Positives = 102/275 (37%), Gaps = 24/275 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVESRK 127
           +I +Y++      SL++N+  ++ +  D++     +      D      +   +G+    
Sbjct: 16  IIRKYQQYLKLEKSLSLNTLDAYLTDLDKLMSFLTLEGINVLDVCLSDLQRFAAGLHDIG 75

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
             P S  + L+ ++  F++ + + Y+  +P   +E PK   +     T E++ +  S   
Sbjct: 76  IHPRSQARILSGIKSFFRFLILENYLEADPSELLEGPKIGFKLPEVLTVEEIDRIISAVD 135

Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-VELPDGFM 242
               EG + R   E L   GLR S+     +  L  +   IK +  G+    V +    +
Sbjct: 136 RSKAEGQRNRAILETLYSCGLRVSELITLKLSDLYFDEGFIKVEGKGSKQRLVPISPRAI 195

Query: 243 KLLAMTPIG-----------KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289
             + +                  F      + ++        K  A KAG+ K  S H  
Sbjct: 196 NEIKLYIPDRNQIEVKKGHEDFVFVSQRRGKGLSRIMIFHMIKELAEKAGITKNISPHTF 255

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           R   AT   + GA    +    G +++   E YT 
Sbjct: 256 RHSFATHLLEGGANLRAIQCMLGHESIATTEIYTH 290


>gi|194016964|ref|ZP_03055577.1| tyrosine recombinase XerD [Bacillus pumilus ATCC 7061]
 gi|194011570|gb|EDW21139.1| tyrosine recombinase XerD [Bacillus pumilus ATCC 7061]
          Length = 296

 Score =  145 bits (366), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 42/264 (15%), Positives = 106/264 (40%), Gaps = 24/264 (9%)

Query: 85  GSLAVNS----RISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFL 137
             L+ N+    +   ++Y   ++      D + +T  HI   ++  K    +  ++++ L
Sbjct: 16  RGLSENTIVSYKRDLQNYLSFLMTHEQLTDIKDVTRLHIIHYLKKLKEEGKSSKTSVRHL 75

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPR 193
           +S+R   ++ +R++    +P  ++E  K + +  +  +  ++++     ++ +    + +
Sbjct: 76  SSIRSFHQFLLREKVTTDDPSWNIETQKTERKLPKVLSLGEVEKLLDTPNQHTPFDYRDK 135

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLA------ 246
              E L  +G+R S+     +  +   +  I+   K      V + +     +       
Sbjct: 136 AMLELLYATGIRVSEMLDLTLADVHLTMGFIRCFGKGRKERIVPIGEAAASAIEEYLEKG 195

Query: 247 ----MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
               +     +  F+N+  +KM+   F    K +A +AG+ K  + H +R   AT   + 
Sbjct: 196 RSKLLKKQPADALFLNHHGKKMSRQGFWKNLKKRALEAGIQKELTPHTLRHSFATHLLEN 255

Query: 301 GATAHELMATYGWKTVDQAETYTK 324
           GA    +    G   +   + YT 
Sbjct: 256 GADLRAVQEMLGHADISTTQIYTH 279


>gi|160892553|ref|ZP_02073343.1| hypothetical protein CLOL250_00082 [Clostridium sp. L2-50]
 gi|156865594|gb|EDO59025.1| hypothetical protein CLOL250_00082 [Clostridium sp. L2-50]
          Length = 292

 Score =  145 bits (366), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 45/270 (16%), Positives = 98/270 (36%), Gaps = 21/270 (7%)

Query: 88  AVNSRISFESYFDQII---RKSGDFDYRKITTKH---IRSGVESRKHTPSSAIQFLTSMR 141
           + N+  S+     +     R++G  D R I   +       +E    + ++  + + S++
Sbjct: 19  SENTVASYRRDLVKFSDFYRENGTEDIRSINETNINTYILYLEKNGKSMATVSRSIASIK 78

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLAFE 197
             F +  R++ +  +P ++++ PK + +     T E++ +          +  + R   E
Sbjct: 79  SFFGFLFREKILMDDPSVNIKPPKIEKKMPDILTIEEVNRLLDQPGDQSPKEIRDRAMLE 138

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG------ 251
            L  +G+R S+     +  +   +  I+         + + D   + L            
Sbjct: 139 LLYATGIRVSELVTLKITDVNLKMGYIECHDLRKSRIIPIEDSAQRALDNYISNVRGDMC 198

Query: 252 --KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHEL 307
              E  F N     M    F    K  A KAG++K  + H +R   A+   + GA    +
Sbjct: 199 KNSEYLFSNCKGTPMTRQGFWKIIKVYADKAGIDKDITPHMIRHSFASHLVNNGADLKAV 258

Query: 308 MATYGWKTVDQAETYTKGADRIRLGIKNSR 337
               G   +   + Y     + RL  +  +
Sbjct: 259 QEMLGHADISTTQIYLNS-KQSRLKEEYQK 287


>gi|260775484|ref|ZP_05884381.1| site-specific recombinase XerD [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260608665|gb|EEX34830.1| site-specific recombinase XerD [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 302

 Score =  145 bits (366), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 44/265 (16%), Positives = 102/265 (38%), Gaps = 23/265 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVESRKHTPSSAIQFLTS 139
             L+ N+  S+ +   ++++   + +YR         +  +S +  + +  +S  + L++
Sbjct: 23  RGLSENTLASYRNDLSKLLQWMTENNYRLDFISLSGLQDYQSWLMDQGYKQTSRARMLSA 82

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLA 195
           +R LF++  R++  A +P   +  PK      +  ++E ++   +          + +  
Sbjct: 83  IRRLFQYLHREKVRADDPSALLVSPKLPKRLPKDLSEEQVEALLNAPDPNDAMELRDKAM 142

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAMTP----- 249
            E L  +GLR ++     ++++      ++ T K G    V + +  +  +         
Sbjct: 143 LELLYATGLRVTELVSLTMENVSLRQGVVRVTGKGGKERLVPMGENAVDWIETFIQQGRS 202

Query: 250 -----IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG 301
                   +  F +   ++M    F    K  A  AG++    S H +R   AT   + G
Sbjct: 203 ELLGETTSDVVFPSKRARQMTRQTFWYRIKHYAVLAGIDTEMLSPHVLRHAFATHLLNYG 262

Query: 302 ATAHELMATYGWKTVDQAETYTKGA 326
           A    +    G   +   + YT  A
Sbjct: 263 ADLRVVQMLLGHSDLSTTQIYTHVA 287


>gi|283479632|emb|CAY75548.1| Tyrosine recombinase xerD [Erwinia pyrifoliae DSM 12163]
          Length = 316

 Score =  145 bits (366), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 47/284 (16%), Positives = 100/284 (35%), Gaps = 27/284 (9%)

Query: 73  WLISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVES 125
            LI ++   A W   +LA N+  S+      +            +      +   +    
Sbjct: 24  DLIEQFL-DALWIERNLAQNTVDSYRLDLRSLGDWLAHQQLSLLNVEVFNLQEFLAQRLE 82

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
             +  +S+ + L++MR LF++  R++    +P   +  PK      +  ++  +++    
Sbjct: 83  GGYKATSSARLLSAMRRLFQYLYREKLREDDPSALLSSPKLPQRLPKDLSEAQVERLLQA 142

Query: 186 ----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240
                    + +   E L  +GLR ++     +  +      ++   K      V + + 
Sbjct: 143 PCLEQPIELRDKAMLELLYATGLRVTELVGLTLSDISLRQGVVRVIGKGNKERLVPMGEE 202

Query: 241 FMKLLAMTPIGKETFFIN----------NDKQKMNATQFSIWFKAKATKAGVN---KSAH 287
            +  +         + +N          N  ++M    F    K  AT AG++    S H
Sbjct: 203 AVHWIEQYIEYGRPWLLNGQTIDVLFPSNRAKQMTRQTFWHRIKHYATLAGIDSDKLSPH 262

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIR 330
            +R   AT   + GA    +    G   +   + YT  A +R+R
Sbjct: 263 VLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLR 306


>gi|228992829|ref|ZP_04152754.1| Tyrosine recombinase xerD [Bacillus pseudomycoides DSM 12442]
 gi|228998874|ref|ZP_04158459.1| Tyrosine recombinase xerD [Bacillus mycoides Rock3-17]
 gi|228760890|gb|EEM09851.1| Tyrosine recombinase xerD [Bacillus mycoides Rock3-17]
 gi|228766878|gb|EEM15516.1| Tyrosine recombinase xerD [Bacillus pseudomycoides DSM 12442]
          Length = 296

 Score =  145 bits (366), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 45/271 (16%), Positives = 104/271 (38%), Gaps = 25/271 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESRKHTPSSAI---QFL 137
             LA N+ +S+E      ++     +    + ++T  HI + ++  K    S+    + +
Sbjct: 16  KGLAKNTVVSYERDLKSYVKYLQHVEQIKTFHEVTRIHIVNFLQYLKENGKSSKTLARHI 75

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPR 193
            S+R   ++ +R+  V  +P + +E P+ + +  +  +  +++       E    G + +
Sbjct: 76  ASIRSFHQFLLRERVVEHDPSVHIETPQGERKLPKVLSVSEVEALLQTPKETSAFGIRDK 135

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAMTPIGK 252
              E L  +GLR S+     ++ +   +  ++   K      + L     + +       
Sbjct: 136 AMLELLYATGLRVSELIALNLEDVHLTMGFVRCVGKGNKERIIPLGSLATEAIQRYIEKG 195

Query: 253 ----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
                     +  F+N+   +++   F    K  A +A + K  + H +R   AT   + 
Sbjct: 196 RKELMGKKTVDALFLNHHGNRLSRQGFWKILKRLAKEANIEKELTPHTLRHSFATHLLEN 255

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRL 331
           GA    +    G   +   + YT    + RL
Sbjct: 256 GADLRAVQEMLGHADISTTQIYTH-VSKARL 285


>gi|255689937|ref|ZP_05413612.1| tyrosine recombinase XerD [Bacteroides finegoldii DSM 17565]
 gi|260624543|gb|EEX47414.1| tyrosine recombinase XerD [Bacteroides finegoldii DSM 17565]
          Length = 319

 Score =  145 bits (366), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 47/275 (17%), Positives = 99/275 (36%), Gaps = 24/275 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQII-----RKSGDFDYRKITTKHIRSGVESRK 127
           +I +Y++      SL+ N+  ++ +  D+++           D      +   +G+    
Sbjct: 16  IIRKYQQYLKLEKSLSPNTLEAYLTDLDKLLSFLTLEGINILDVCLADLQRFAAGLHDIG 75

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
             P S  + L+ ++  F++ +  +Y+  +P   +E P    +     T E++ +  +   
Sbjct: 76  IHPRSQARILSGIKSFFRFLIMADYLEADPSELLESPNIGLKLPEVLTVEEIDRIIATVD 135

Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFM 242
               EG + R   E L   GLR S+     +  L  +   IK +  G     + +    +
Sbjct: 136 RSKAEGQRNRAILETLYSCGLRVSELVNLKLSDLYFDEGFIKVEGKGNKQRLIPISPRAI 195

Query: 243 KLLAMTPIG-----------KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289
             + +                  F      ++++        K  A +A + K  S H  
Sbjct: 196 NEIKLYFTDRNQIEVKSGHEDFVFISLRRGKRLSRIMIFHMIKELAQQASITKNISPHTF 255

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           R   AT   + GA    +    G +++   E YT 
Sbjct: 256 RHSFATHLLEGGANLRAIQCMLGHESIATTEIYTH 290


>gi|330432635|gb|AEC17694.1| site-specific tyrosine recombinase XerD [Gallibacterium anatis
           UMN179]
          Length = 297

 Score =  145 bits (366), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 45/276 (16%), Positives = 96/276 (34%), Gaps = 24/276 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRK-----ITTKHIRSGVESRKHTPSSAIQFLTS 139
            +L+ N+  S+ S    +                +  +        + +  +S  + L++
Sbjct: 18  KNLSQNTIASYRSDLKFLSEWLEKHHLTLQQVQYLDLQAFLGERLQQGYKATSYSRMLSA 77

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLA 195
           MR LF++  +++Y   NPC  +  PK      +  T+  +    +  +       + +  
Sbjct: 78  MRKLFQYLYQEKYREDNPCSLLTSPKLPARLPKYLTESQVTDLLNTPATENALELRDKAM 137

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG----------FMKL 244
            E L  +GLR S+       ++      ++   K      V + +           + + 
Sbjct: 138 LELLYATGLRVSELVSLTTNNINLQQGVVRVIGKADKERLVPIGEEANYWVQQFILYGRA 197

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATISADAG 301
             +     +  F +   + M    F    K  A+ A ++    S H +R   AT   + G
Sbjct: 198 ELLGGQSSDVLFPSRQGKLMTRQTFWYRIKHYASLANIDADKLSPHVLRHAFATHLVNHG 257

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
           A    +    G   +   + YT  A + RL   +S+
Sbjct: 258 ADLRVVQMLLGHSDLSTTQIYTHVA-KERLKQLHSK 292


>gi|313632584|gb|EFR99578.1| tyrosine recombinase XerD [Listeria seeligeri FSL N1-067]
 gi|313637133|gb|EFS02675.1| tyrosine recombinase XerD [Listeria seeligeri FSL S4-171]
          Length = 297

 Score =  145 bits (366), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 49/288 (17%), Positives = 103/288 (35%), Gaps = 33/288 (11%)

Query: 73  WLISEYRKSAHW----GSLAVNSRISFESYFDQIIRKSGDF----DYRKITTKHIRSGVE 124
            LI ++    H+      L+ N+  ++E      +          D   +    I   + 
Sbjct: 3   DLIDDFL---HFLIVEKGLSANTIKAYERDLHYFVSYINTARPLTDPNTLERSDIVGFMA 59

Query: 125 ---SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ- 180
                  +  S  +++ S+R  F + +    ++ +P + +E PK+     +    +D++ 
Sbjct: 60  FARKEGKSARSVARYIASLRSFFHYLMHDGKMSHDPMIQIETPKQAQGLPKVLNLDDVEL 119

Query: 181 ---QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE 236
                 +  S G + +   E L  +GLR ++  +  +  L   +  I+T  K      + 
Sbjct: 120 LLSSSDTSTSLGLRDQAMMEILYATGLRVTELVQLKMDDLHLQMGFIQTIGKGDKERIIP 179

Query: 237 L-----------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284
           L            +     L       +  F+N+  Q +    F    K  A ++G+ K 
Sbjct: 180 LGKTATTVLEQYLEEARPKLRRPKYRNDFVFLNHHGQGLTRQGFWKILKGIAKESGIEKP 239

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            + H +R   AT   + GA    +    G   +   + YT    ++RL
Sbjct: 240 ITPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTH-VTKLRL 286


>gi|157372126|ref|YP_001480115.1| site-specific tyrosine recombinase XerD [Serratia proteamaculans
           568]
 gi|157323890|gb|ABV42987.1| tyrosine recombinase XerD [Serratia proteamaculans 568]
          Length = 299

 Score =  145 bits (366), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 47/280 (16%), Positives = 96/280 (34%), Gaps = 26/280 (9%)

Query: 72  KWLISEYRKSAHW--GSLAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVE 124
             LI ++   A W   +LA N+  S+      +      + +     + +  +   +   
Sbjct: 6   SALIEQFL-DALWLERNLAENTLASYRLDLQALGAWLNQQNTSLLQAQALDLQAFLADRV 64

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
              +  +S+ + L++MR LF++  R+   + +P   +  PK      +  ++  +     
Sbjct: 65  EGGYKATSSARLLSAMRRLFQYLYRENMRSDDPTALLASPKLPQRLPKDLSEAQVDALLK 124

Query: 185 F----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPD 239
                     + +   E L  +GLR S+     +  +      ++   K      V L +
Sbjct: 125 APCVDQPLELRDKAMLEVLYATGLRVSELVGLTISDVSLRQGVVRVIGKGNKERLVPLGE 184

Query: 240 GFMKLLAMTPIGKETFFIN----------NDKQKMNATQFSIWFKAKATKAGVN---KSA 286
             +  +         + +N          N  Q+M    F    K  A  AG++    S 
Sbjct: 185 EAVYWIENYLEHGRPWMVNGQALDVLFPSNRSQQMTRQTFWHRIKHYAILAGIDSERLSP 244

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           H +R   AT   + GA    +    G   +   + YT  A
Sbjct: 245 HVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA 284


>gi|330427289|gb|AEC18623.1| site-specific tyrosine recombinase XerD [Pusillimonas sp. T7-7]
          Length = 282

 Score =  145 bits (366), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 48/275 (17%), Positives = 93/275 (33%), Gaps = 24/275 (8%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT-----PSSAIQFLTSM 140
            LA N+  ++                + +         +           ++A + L ++
Sbjct: 4   GLAQNTLSAYRRDLSAFALWLHAKPGKTLEQADAADIQDWFAAKHASTKATTANRRLAAL 63

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLAF 196
           +  + WA+RQ  VA +PCL++   K+     +  +++ +             G + R   
Sbjct: 64  KRYYLWAMRQGLVAKDPCLTLRAAKQAARFPKTMSEDQVDALLQAPDDNSPLGLRDRAML 123

Query: 197 EFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTP----- 249
           E L  +GLR S+     +  +     +  +   K G    V L D  +  + +       
Sbjct: 124 ETLYATGLRVSELINLELLDVSLTEGVVRVTQGKGGKDRLVPLGDEALHWIDLYAKQSRP 183

Query: 250 -----IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGA 302
                      F+      M    F +  K  A  A ++   S H +R   AT   + GA
Sbjct: 184 GLLGQRRCNALFVTARAAAMTRQSFWLIVKKYAALADIHTPLSPHVLRHAFATHLLNHGA 243

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
               +    G   +   + YT  A R RL   +++
Sbjct: 244 DLRVVQMLLGHADISTTQIYTHVA-RERLKTMHAK 277


>gi|196251170|ref|ZP_03149847.1| integrase family protein [Geobacillus sp. G11MC16]
 gi|196209334|gb|EDY04116.1| integrase family protein [Geobacillus sp. G11MC16]
          Length = 310

 Score =  145 bits (366), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 44/276 (15%), Positives = 97/276 (35%), Gaps = 22/276 (7%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYR--------KITTKHIRS 121
           T + L+  + +     +L  ++   + S  +  I+   + +          +   ++I  
Sbjct: 13  TFEELLEIFIEDCELRNLREHTIKYYRSELNAFIKLLKEQEIELRVSEWTGETIKRNIIM 72

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
            ++ +     S    L ++R  F +   +  +  NP   ++  K +   +  +  + ++ 
Sbjct: 73  YMKEKGLKTVSINSRLRALRAFFNFLEGRNLIKSNPMKDIKLLKDRKRIVETFDNQQIKA 132

Query: 182 FKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITV 235
                      G +       LL +G+R ++        +  +  +  I+  K G    V
Sbjct: 133 LFKACDLRTFVGLRDYTIMMLLLETGVRVNELVGIKTTDIIWEQKVIRIRNTKGGFERFV 192

Query: 236 ELPD----GFMKLLA-MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAH 287
            + D       K +A    +  +  FI  D   ++  Q     K    KAG+     S H
Sbjct: 193 PIQDKMINQLKKYIAVRGSVDTDYLFITRDDTPLSKKQVQDRIKEYGKKAGIKNVRCSPH 252

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
             R   A +    GA A +L A  G  +++  + Y 
Sbjct: 253 TFRHTFAKLCVLNGANAFQLQAILGHTSLEMTKVYV 288


>gi|226951750|ref|ZP_03822214.1| site-specific tyrosine recombinase [Acinetobacter sp. ATCC 27244]
 gi|226837540|gb|EEH69923.1| site-specific tyrosine recombinase [Acinetobacter sp. ATCC 27244]
          Length = 306

 Score =  145 bits (366), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 55/299 (18%), Positives = 107/299 (35%), Gaps = 20/299 (6%)

Query: 57  KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF---DQIIRKSGDFDYRK 113
           K+  I +    P  L +L   +R      +++ ++R ++ S      ++ R +    +  
Sbjct: 4   KKPRIPTAVSIPENLSFL-QGFRDYLVAQTVSPHTRNAYLSDLIQCSELHRTASLPQWSS 62

Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
                +   +     +P S  + L+++R  +K+   Q+    NP  S   PK      + 
Sbjct: 63  EDIGDVLIELTKAGKSPRSIARCLSALRQFYKFLREQKLREDNPVASHHSPKIGRALPKD 122

Query: 174 WTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQK 228
            +++D++   +        G + R  FE L   GLR S+     ++ +      ++ T K
Sbjct: 123 LSEQDVEALINAPDISTTLGLRDRAMFEVLYACGLRVSELLNLRLELINLKQGFVRITGK 182

Query: 229 TGTIITVELP----DGFMKLLAMT-----PIGKETFFINNDKQKMNATQFSIWFKAKATK 279
                 V L     D   K LA +         +  F+      M+   F    K  A +
Sbjct: 183 GNKERLVPLGQYACDWIEKYLAESRPQLYKSNTDYLFLTQHGGIMSRQNFWYAIKRYALQ 242

Query: 280 AGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
           A +    S H +R   AT   + GA    +    G   +   + YT  A      + + 
Sbjct: 243 ANIQAELSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQHRMQALHHQ 301


>gi|292487142|ref|YP_003530012.1| tyrosine recombinase xerD [Erwinia amylovora CFBP1430]
 gi|292900477|ref|YP_003539846.1| integrase/recombinase [Erwinia amylovora ATCC 49946]
 gi|291200325|emb|CBJ47453.1| integrase/recombinase [Erwinia amylovora ATCC 49946]
 gi|291552559|emb|CBA19604.1| Tyrosine recombinase xerD [Erwinia amylovora CFBP1430]
 gi|312171246|emb|CBX79505.1| Tyrosine recombinase xerD [Erwinia amylovora ATCC BAA-2158]
          Length = 297

 Score =  145 bits (366), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 48/284 (16%), Positives = 100/284 (35%), Gaps = 27/284 (9%)

Query: 73  WLISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVES 125
            LI ++   A W   +LA N+  S+      +           +       +   +    
Sbjct: 5   DLIEQFL-DALWIERNLAQNTVDSYRLDLRSLGDWLAHQQLSLLNVEVANLQEFLAQRLE 63

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
             +  SS+ + L++MR LF++  R++    +P   +  PK      +  ++  +++    
Sbjct: 64  GGYKASSSARLLSAMRRLFQYLYREKLRDDDPSALLSSPKLPQRLPKDLSEAQVERLLQA 123

Query: 186 ----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDG 240
                    + +   E L  +GLR ++     +  +      ++    G     V + + 
Sbjct: 124 PCLDLPIELRDKAMLELLYATGLRVTELVGLTLSDISLRQGVVRVMGKGNKERLVPMGEE 183

Query: 241 FMKLLAMTPIGKETFFIN----------NDKQKMNATQFSIWFKAKATKAGVN---KSAH 287
            +  +         + +N          N  ++M    F    K  AT AG++    S H
Sbjct: 184 AVHWIEQFIEYGRPWLLNGQTIDVLFPSNRAKQMTRQTFWHRIKHYATLAGIDSEKLSPH 243

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIR 330
            +R   AT   + GA    +    G   +   + YT  A +R+R
Sbjct: 244 VLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLR 287


>gi|153002033|ref|YP_001367714.1| tyrosine recombinase XerD [Shewanella baltica OS185]
 gi|151366651|gb|ABS09651.1| tyrosine recombinase XerD [Shewanella baltica OS185]
          Length = 309

 Score =  145 bits (366), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 51/275 (18%), Positives = 102/275 (37%), Gaps = 23/275 (8%)

Query: 85  GSLAVNSRISFE---SYFDQIIRKSGD--FDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
             L+ N+  ++     +FD+   + G       +   +   +    +    +S+ + L+S
Sbjct: 31  KGLSDNTLSAYRTDLRHFDRYQAQQGVTLLAVSQADVRAYLAFRVEQDFARTSSARLLSS 90

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195
           +R  + + V+ + ++ +P   VE PK         ++  + +  S      +   + +  
Sbjct: 91  LRRFYTYLVQTKQISADPMALVESPKLTRHLPDSLSESQVDRLLSEPNVEDAVECRDKAM 150

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPD-------GFMKLLAM 247
            E L  +GLR S+     ++ +      ++   K G    V L +        +MK    
Sbjct: 151 LELLYATGLRVSELVGLTMEQMSLRQGLVRIVGKGGKERLVPLGELAITEVESYMKFARQ 210

Query: 248 TPIGK---ETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGA 302
             +G    +  F +   Q M    F    K  A +AG+    S H +R   AT   + GA
Sbjct: 211 ELLGNKQSDVVFPSKRGQMMTRQTFWHRIKLYALRAGIETALSPHTLRHAFATHLLNHGA 270

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
               +    G   +   + YT  A R RL   + +
Sbjct: 271 DLRVVQLLLGHSDLSTTQIYTHVA-RARLQELHQQ 304


>gi|99078559|ref|YP_611817.1| phage integrase [Ruegeria sp. TM1040]
 gi|99035697|gb|ABF62555.1| phage integrase [Ruegeria sp. TM1040]
          Length = 197

 Score =  145 bits (366), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 40/161 (24%), Positives = 65/161 (40%), Gaps = 4/161 (2%)

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
           +  ++          L FE  L +G R SD  R    H++     +   KT     +   
Sbjct: 30  IAAYREHAD--GLALLIFELALGTGQRASDLTRMEWGHIEVGRIWVTQGKTNVRFWIPFT 87

Query: 239 DGFMKLLAMTPIGKETFFIN-NDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATI 296
                +LA     K  F +      ++N  Q           AG+ + S HG+R  +A  
Sbjct: 88  KRLSSVLAGVDTSKSRFILTDESGHQLNYDQLQKQVIRVRRAAGLMDYSLHGLRDSAAGE 147

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
            A+AG T H++ A  G K++   + Y+KGA + RL I+   
Sbjct: 148 LAEAGCTDHQIAAITGHKSLSMVQKYSKGASQKRLAIEAQN 188


>gi|169634632|ref|YP_001708368.1| site-specific tyrosine recombinase [Acinetobacter baumannii SDF]
 gi|169153424|emb|CAP02561.1| site-specific tyrosine recombinase [Acinetobacter baumannii]
          Length = 306

 Score =  145 bits (366), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 55/294 (18%), Positives = 104/294 (35%), Gaps = 20/294 (6%)

Query: 55  TPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF---DQIIRKSGDFDY 111
             K+  I SP + P  L +L   +R      +++ ++R ++ S      +I +K+   D+
Sbjct: 2   INKKPRIPSPVQIPEHLSFL-QGFRDYLVAQTVSPHTRNAYLSDLIQCSEIHKKNRLPDW 60

Query: 112 RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
                  +   +     +P S  + L+++R  +K    Q+  + NP  +   PK      
Sbjct: 61  TSDDISDVLIELTKVGKSPRSIARCLSALRQFYKSLREQKLRSDNPVATHHSPKIGRALP 120

Query: 172 RPWTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-T 226
           +  ++ED++            G + R  FE L   GLR S+     ++ +      ++ T
Sbjct: 121 KDLSEEDVEALIQAPDITTALGLRDRAMFEVLYACGLRVSELLNLRLELINLKQGYLRIT 180

Query: 227 QKTGTIITVELPDGFMKLLAMT---------PIGKETFFINNDKQKMNATQFSIWFKAKA 277
            K      V L       +                +  F+      M+   F    K  A
Sbjct: 181 GKGNKERLVPLGQYACDWVERYLNEARPQLYKSSTDYLFLTQHGGIMSRQNFWYAIKRYA 240

Query: 278 TKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            +A +    S H +R   AT   + GA    +    G   +   + YT  A   
Sbjct: 241 LQANIQAELSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVR 294


>gi|332160506|ref|YP_004297083.1| site-specific tyrosine recombinase XerD [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|318607025|emb|CBY28523.1| tyrosine recombinase XerD [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|325664736|gb|ADZ41380.1| site-specific tyrosine recombinase XerD [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|330863449|emb|CBX73568.1| tyrosine recombinase xerD [Yersinia enterocolitica W22703]
          Length = 299

 Score =  145 bits (366), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 55/284 (19%), Positives = 110/284 (38%), Gaps = 27/284 (9%)

Query: 74  LISEYRKSAHW--GSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVESR--- 126
           LI ++   A W   +LA N+  S+      +    +  D D  +  ++ ++S +  R   
Sbjct: 8   LIEQFL-DALWLERNLAENTLASYRLDLHALSGWLEHHDSDLLRAGSQDLQSFLAERIEG 66

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185
            +  +S+ + L++MR LF++  R++    +P   +  PK      +  ++  +    +  
Sbjct: 67  GYKSTSSARLLSAMRRLFQYLYREKLREDDPTALLSSPKLPQRLPKDLSEAQVDALLNSP 126

Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG- 240
                   + +   E L  +GLR S+     +  +      ++   K      V L +  
Sbjct: 127 NVDIPLELRDKAMLEVLYATGLRVSELVGLTISDVSLRQGVVRVIGKGNKERLVPLGEEA 186

Query: 241 ------FMKLLAMTPIGKETF---FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288
                 +M+      I  ++    F +N  Q+M    F    K  A  AG++    S H 
Sbjct: 187 VYWIENYMEYGRPWLINGQSLDVLFPSNRSQQMTRQTFWHRIKHYAILAGIDSERLSPHV 246

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRL 331
           +R   AT   + GA    +    G   +   + YT  A +R++L
Sbjct: 247 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKL 290


>gi|114046522|ref|YP_737072.1| phage integrase family protein [Shewanella sp. MR-7]
 gi|113887964|gb|ABI42015.1| phage integrase family protein [Shewanella sp. MR-7]
          Length = 338

 Score =  145 bits (366), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 67/334 (20%), Positives = 111/334 (33%), Gaps = 33/334 (9%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHES--TFIPAYMSALTGSTPKREYINSP 64
           +P  V   + R GK   Y  K   R I L     +      AY +A+  S  K       
Sbjct: 11  MPKGVYLHKVR-GKATSYIMKNSKRTITLCSASSTRAEVWTAYEAAIEKSLTK------- 62

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
                T K +  EY+ SA +  LA  S+   E       +  G+ +   I   HIR  ++
Sbjct: 63  ----YTFKRMADEYQASATFKELAPRSQRDRERELAMCNKVFGEMEPDTIKPHHIRRYMD 118

Query: 125 SRKHT-PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
            R +T  + A   L++  V+F W   + +   NP   V++ K K+   R  T  +     
Sbjct: 119 IRGNTSRTQANHELSACSVVFGWGYERGHCKENPAKGVKKFKNKSR-DRYITDYEFNALL 177

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
                  + ++A E       R +D        + +    I+  KTG            +
Sbjct: 178 ECCE--QRLKIACEISYLCAARQADVLSLKWSQVMDEGIFIQQGKTGKKQIKAWSPRLHE 235

Query: 244 LLAMTPI----GKETFFIN-NDKQKMNATQFSIWFKAKATKAGVNK-------SAHGVRK 291
           L+             F IN     ++ A      ++    K  +         + H + K
Sbjct: 236 LINEAKTLRKGIASVFVINKTGGGRLTADGLRSSWRRAIDKLALQYPDIERTFTFHDI-K 294

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKG 325
                  +     H+     G KTV Q   Y + 
Sbjct: 295 AKGISDFE--GNIHDKQQFSGHKTVGQVNVYDRR 326


>gi|307289082|ref|ZP_07569038.1| tyrosine recombinase XerD [Enterococcus faecalis TX0109]
 gi|306499791|gb|EFM69152.1| tyrosine recombinase XerD [Enterococcus faecalis TX0109]
          Length = 296

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 45/274 (16%), Positives = 104/274 (37%), Gaps = 27/274 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDY-------RKITTKHIRSGVESRKHTPSSAIQFL 137
             L+ N+R S+E    + +    +          R + T+ ++S  E ++ + +S I+ +
Sbjct: 16  RGLSNNTRRSYERDLKKYVDFLQEQGLHSWDEVDRYMITEFLQSLHEEQQAS-ASVIRMI 74

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPR 193
           +S+R   ++  ++     NP   ++ PK+  +     + +++ +           G + R
Sbjct: 75  SSLRGFHQFLRQERLSEHNPMQHIDSPKKVQKLPSTLSVDEVTRLIETPDTSKPLGMRNR 134

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM----- 247
              E +  +GLR S+     +  L  +I  ++T  K      + L D  ++ +       
Sbjct: 135 AILEVMYATGLRVSELIEIKLGDLHLSIGLLQTIGKGDKERIIPLGDYAIQWIQRYMNEA 194

Query: 248 ------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
                     +   F+N+  + ++        K    +A + K  + H +R   AT   +
Sbjct: 195 RPQLIKNHPNETHLFVNHHGEPLSRQGIWKNLKQIVREAQIEKNITPHTLRHSFATHLLE 254

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
            GA    +    G   +   + YT    + R+  
Sbjct: 255 NGADLRIVQELLGHADISTTQIYTH-ITKQRMAD 287


>gi|171320434|ref|ZP_02909468.1| tyrosine recombinase XerD [Burkholderia ambifaria MEX-5]
 gi|171094319|gb|EDT39392.1| tyrosine recombinase XerD [Burkholderia ambifaria MEX-5]
          Length = 320

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 49/268 (18%), Positives = 91/268 (33%), Gaps = 22/268 (8%)

Query: 85  GSLAVNSRISFES---YFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSSAIQFLTSM 140
             LA N+  ++      F Q +  + D          +   + +R     +S+ + L+  
Sbjct: 43  HGLARNTLDAYRRDLVLFSQWLAATHDVPLDSADEAMLIGYIAARSDGKATSSNRRLSVF 102

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAF 196
           R  + WAVR+ + + +P L +   K+        ++  ++        G+    + R   
Sbjct: 103 RRYYGWAVREHHASADPTLRITSAKQAARFPSTLSEAQVEALLGAPDIGTPLGLRDRTML 162

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLLAM 247
           E +  SGLR S+        +  N   ++    G+   +          +          
Sbjct: 163 ELMYASGLRVSELVTLKTVEVGLNEGVVRVMGKGSKERLVPFGEVAHGWIERYLRDARPA 222

Query: 248 T--PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGAT 303
                  +  F+      M   QF    K  A +A V  + S H +R   AT   + GA 
Sbjct: 223 LLGARAADALFVTARGDGMTRQQFWNIIKRHARQADVRAHLSPHTLRHAFATHLLNHGAD 282

Query: 304 AHELMATYGWKTVDQAETYTKGADRIRL 331
              +    G   +   + YT  A R RL
Sbjct: 283 LRVVQLLLGHSDISTTQIYTHVA-RERL 309


>gi|238759282|ref|ZP_04620448.1| Tyrosine recombinase xerD [Yersinia aldovae ATCC 35236]
 gi|238702443|gb|EEP94994.1| Tyrosine recombinase xerD [Yersinia aldovae ATCC 35236]
          Length = 299

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 97/278 (34%), Gaps = 26/278 (9%)

Query: 74  LISEYRKSAHW--GSLAVNSRISFESYFDQI---IRKSGDFDYRKITT--KHIRSGVESR 126
           LI ++   A W   +LA N+  S+      +   +   G    R +    +   +     
Sbjct: 8   LIEQFL-DALWLERNLAENTLASYRLDLHALTGWLECHGSDLLRAVPQDLQSFLAERIEG 66

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185
            +  +S+ + L++MR LF++  R++    +P   +  PK      +  ++  +    +  
Sbjct: 67  GYKATSSARLLSAMRRLFQYLYREKLREDDPTALLSSPKLPQRLPKDLSEAQVDALLNSP 126

Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241
                   + +   E L  +GLR S+     +  +      ++   K      V L +  
Sbjct: 127 NVDIPLELRDKAMLEVLYATGLRVSELVGLTISDVSLRQGVVRVIGKGNKERLVPLGEEA 186

Query: 242 MKLLAMTPIGKETFFIN----------NDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288
           +  +         + IN          N  Q+M    F    K  A  AG++    S H 
Sbjct: 187 VYWIENYMEHGRPWLINGQSLDVLFPSNRSQQMTRQTFWHRIKHYAILAGIDSERLSPHV 246

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           +R   AT   + GA    +    G   +   + YT  A
Sbjct: 247 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA 284


>gi|261417849|ref|YP_003251531.1| site-specific tyrosine recombinase XerD [Geobacillus sp. Y412MC61]
 gi|297529517|ref|YP_003670792.1| tyrosine recombinase XerD [Geobacillus sp. C56-T3]
 gi|319767339|ref|YP_004132840.1| tyrosine recombinase XerD [Geobacillus sp. Y412MC52]
 gi|261374306|gb|ACX77049.1| tyrosine recombinase XerD [Geobacillus sp. Y412MC61]
 gi|297252769|gb|ADI26215.1| tyrosine recombinase XerD [Geobacillus sp. C56-T3]
 gi|317112205|gb|ADU94697.1| tyrosine recombinase XerD [Geobacillus sp. Y412MC52]
          Length = 298

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 45/266 (16%), Positives = 102/266 (38%), Gaps = 26/266 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFD-------YRKITTKHIRSGVESRKHTPSSAIQFL 137
            +LA N+ +S+E    + +R     +         ++   H    +  +  +  +  + L
Sbjct: 16  RNLAHNTIVSYERDLKKYVRYLRQVEQLQAWGEVERLHILHFLKFLSEQGQSARTIARHL 75

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPR 193
            S+R   ++ +R++  A +P + +E P+ +    +  + E+++   +        G + +
Sbjct: 76  ASIRSFHQFLLREKIAAQDPTVHIETPQFERTLPKVLSVEEVEALLAAPQVSTPFGLRDK 135

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-------------ELPDG 240
              E L  +G+R S+  +  +  +   +  ++    G    +              L  G
Sbjct: 136 AMLELLYATGMRVSELVQLNLADVHLTMGFVRCYGKGRKERIVPIGRMAIEALAHYLERG 195

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISA 298
             +L+       E  F+N+  Q++    F    K  A +AG+ K  + H +R   AT   
Sbjct: 196 RPQLVNPRRRATEALFLNHYGQRLTRQGFWKILKRLAKEAGIEKELTPHTLRHSFATHLL 255

Query: 299 DAGATAHELMATYGWKTVDQAETYTK 324
           + GA    +    G   +   + YT 
Sbjct: 256 ENGADLRAVQELLGHADISTTQMYTH 281


>gi|118594353|ref|ZP_01551700.1| Tyrosine recombinase XerD [Methylophilales bacterium HTCC2181]
 gi|118440131|gb|EAV46758.1| Tyrosine recombinase XerD [Methylophilales bacterium HTCC2181]
          Length = 295

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 53/272 (19%), Positives = 98/272 (36%), Gaps = 31/272 (11%)

Query: 86  SLAVNSRISFESYFDQII--------RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFL 137
            L+ N+  S+   FD II        +K    D  ++  +   +          S  + L
Sbjct: 18  GLSKNTLNSYR--FDLIIFDSWLGEQKKIAMMDVSELEIQEFLAFKFP-SSKSRSISRLL 74

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPR 193
            ++R  F++ +R++ +  +P L ++ PK      +  ++E+++          S G + R
Sbjct: 75  ATLRRFFRYQLREKKIQKDPTLKIQTPKIPKSLPKSLSEEEVESLLDAPNLDSSSGLRDR 134

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251
              E L   GLR ++     +  +   + +  + T K      V + +  +  +      
Sbjct: 135 SMLELLYACGLRVTELVDIQLTEVILSDGVIRV-TGKGSKTRLVPMGEEAVDWIKKYIAE 193

Query: 252 KET----------FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
                         F+ N    M    F    K  A  A +NK  S H +R   AT   +
Sbjct: 194 ARDDILRKKTSKFLFVTNRGGAMTRQAFWYVIKKYAVIANINKPMSPHILRHAFATHLIN 253

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            GA    +    G   +   + YT  A R RL
Sbjct: 254 HGADLRVVQMLLGHTDISTTQIYTHVA-RERL 284


>gi|323493661|ref|ZP_08098782.1| site-specific tyrosine recombinase XerD [Vibrio brasiliensis LMG
           20546]
 gi|323312184|gb|EGA65327.1| site-specific tyrosine recombinase XerD [Vibrio brasiliensis LMG
           20546]
          Length = 302

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 44/280 (15%), Positives = 106/280 (37%), Gaps = 26/280 (9%)

Query: 72  KWLISEYRKSAHW--GSLAVNSRISFE----SYFDQIIRKSGDFDYRKIT-TKHIRSGVE 124
           + ++ ++  S  W    L+ N+  S+          +   +   D+  ++  +  +S + 
Sbjct: 9   QGIVEQFLDSM-WMERGLSENTLASYRNDLVKLLQWMTANNYRLDFISLSGLQEYQSWLS 67

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
              +  +S  + L+++R LF++  R++  + +P   +  PK      +  T++ ++   +
Sbjct: 68  DSGYKQTSRARMLSAIRRLFQYLHREKIRSDDPSALLVSPKLPKRLPKDLTEDQVEALLN 127

Query: 185 FWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPD 239
                     + +   E L  +GLR ++     ++++      ++ T K G    V + +
Sbjct: 128 APDPNDAMELRDKAMLELLYATGLRVTELVSLTMENISLRQGVVRVTGKGGKERLVPMGE 187

Query: 240 GFMKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSA 286
             ++ +                 +  F +   ++M    F    K  A  AG++    S 
Sbjct: 188 NAVEWIETFLQQGRSELLGETTSDVVFPSKRARQMTRQTFWHRIKHYAVLAGIDTELLSP 247

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           H +R   AT   + GA    +    G   +   + YT  A
Sbjct: 248 HVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVA 287


>gi|318605376|emb|CBY26874.1| hypothetical protein Y11_13071 [Yersinia enterocolitica subsp.
           palearctica Y11]
          Length = 332

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 51/282 (18%), Positives = 99/282 (35%), Gaps = 21/282 (7%)

Query: 59  EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH 118
           E   + +K  +TL  L+  + +S  +  LA  ++  +  Y  +++   G      I  +H
Sbjct: 45  EKFINEKKDKSTLNTLVESFFRSVDFIDLATETQKDYRKYATKLLPVFGAMHPDNIKPEH 104

Query: 119 IRSGVESRK-HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
           +R  ++ R   + + A +  T M   ++W   + +V  NPC  V++ K ++   R  T E
Sbjct: 105 VRKYMDKRGLSSRTQANREKTFMSRAYRWGYERGFVKGNPCKGVKQFKEESRE-RYITDE 163

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237
           +         +    R A E       R +D         + +   I+  KTG     E 
Sbjct: 164 EYNALYKAAPD--IVRAAMEIAYLCLARQADVLSLRKDQFRESGIYIRQGKTGAKQIKEW 221

Query: 238 PDGFMKLLAMT------PIGKETFFINND-KQKMNATQFSIWFKAKATKAG-------VN 283
            +     +A+       P     + I      +     F+  ++     A         N
Sbjct: 222 SERLRDAIALAESLPLQPGISSVYIIRQRTGLRYTRDGFNSRWRKAREAAKEAYPELDFN 281

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
            + H + K       +   +  E  A  G K + Q   Y + 
Sbjct: 282 FTFHDL-KAKGVSDLE--GSLSEKQAISGHKNMGQTARYDRK 320


>gi|332175380|gb|AEE24634.1| tyrosine recombinase XerD [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 301

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 52/301 (17%), Positives = 104/301 (34%), Gaps = 35/301 (11%)

Query: 73  WLISEYRKSAHW--GSLAVNSRISFESYF----DQIIRKSGDFDYRKITTKHIRSGVESR 126
            +I ++  +  W    L+ N+  ++ S      D + ++        I T+ I   +  R
Sbjct: 9   AVIEQFLDTI-WLEKGLSENTLEAYRSDLTKFSDYLNKQLPHTHLLDIQTEDINQYMAHR 67

Query: 127 ---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
                T  S+ + L+S R    + +       +P   ++ PK      +  +++ +    
Sbjct: 68  YDSGLTERSSARCLSSFRRFSGYMLAHGLREDDPVSRMQNPKLSKPLPKTLSEQQVDDLL 127

Query: 184 SF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELP 238
           +          + +   E L  +GLR ++     V  L  +   ++ T K      V L 
Sbjct: 128 NAPQTDDPIHLRDKAMLEVLYATGLRVTELVTLRVGQLSVSQGVVRVTGKGNKERLVPLG 187

Query: 239 DGFMKLL---------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAH 287
           +  +  L         A+     +  F +N    M    F    K  A +A +  + S H
Sbjct: 188 EEALDWLSKYLKEARGALLRNESDVLFPSNRGTIMTRQTFWHRIKFHAAQANITSDLSPH 247

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
            +R   AT   + GA    +    G   +   + YT  A         + R+  +V +  
Sbjct: 248 TLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA---------TARLQELVANHH 298

Query: 348 P 348
           P
Sbjct: 299 P 299


>gi|311693653|gb|ADP96526.1| site-specific tyrosine recombinase XerD [marine bacterium HP15]
          Length = 300

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 50/270 (18%), Positives = 96/270 (35%), Gaps = 25/270 (9%)

Query: 86  SLAVNSRISFESYF----DQIIRKSGDFDYRKITTKHIRSGVE---SRKHTPSSAIQFLT 138
            L   +R ++ S      + +  + G    R +    + + +    ++    S+A + L+
Sbjct: 21  GLGEKTRQAYRSDLLRLSEWLESQPGKPLLRDVRRTDLLAWMSSGLAQGVKSSTAARRLS 80

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG----SQPRL 194
            +R  +++ +R+  +  +P L ++ P+         T+ ++    S    G     + + 
Sbjct: 81  GLRRFYRFLLREGLITEDPTLRIDSPRLPRRLPDSLTEGEVDALLSEPDPGIAIELRDKA 140

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLA------- 246
             E L   GLR S+     V  +      ++ T K      V L +  +  L        
Sbjct: 141 MLEILYGCGLRVSELTELRVDQVNLRQGVVRITGKGDKERLVPLGEEAVDWLLQYMKEGR 200

Query: 247 ---MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301
              +     +  F  N    M    F    K  A + G+ K  S H +R   AT   + G
Sbjct: 201 PELLKGRSCDALFPGNRAAAMTRQTFWHRIKHYAVRVGIRKHLSPHTLRHAFATHLLNHG 260

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRL 331
           A    +    G   +   + YT  A R RL
Sbjct: 261 ADLRVVQMLLGHSDLSTTQIYTHVA-RQRL 289


>gi|86142675|ref|ZP_01061114.1| putative tyrosine recombinase [Leeuwenhoekiella blandensis MED217]
 gi|85830707|gb|EAQ49165.1| putative tyrosine recombinase [Leeuwenhoekiella blandensis MED217]
          Length = 298

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 52/273 (19%), Positives = 97/273 (35%), Gaps = 25/273 (9%)

Query: 85  GSLAVNSRISF----ESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--TPSSAIQFLT 138
             L+ N+ +++          I   S +     IT + ++  + +     T SS  + ++
Sbjct: 18  RGLSENTVVNYGLDISKLIKWIDEHSVEASPISITKEQLQDFIYTYAKELTASSQARLIS 77

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRL 194
            ++  F++ V ++Y   NP   +E PK   +     +++++ +          +G + R 
Sbjct: 78  GLKGYFEYLVFEDYRKDNPTDLIEAPKVGRKLPDTLSEDEVNRIIDAVDLSRPQGERNRA 137

Query: 195 AFEFLLYSGLRCSDSCRAGVQH-LQNNIFSIKTQKTGTIITVELPDGFMKLL-------- 245
             E L   GLR S+     +     +  + + T K      V +     K +        
Sbjct: 138 ILETLYGCGLRVSEVLNLKLSDLFFDEGYILVTGKGDKQRFVPIAPITQKYIEIYRDQIR 197

Query: 246 ---AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
              A  P  K   F+N    ++         K    KAG+ K  S H  R   AT     
Sbjct: 198 IHEAPKPEFKNILFLNRRGAQLTRAMIFTLVKQHTQKAGIKKKISPHTFRHSFATHLLQN 257

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           GA    +    G +++   E Y    DR  L  
Sbjct: 258 GADLRAIQQMLGHESITTTEVYMH-VDRSHLAD 289


>gi|163814162|ref|ZP_02205554.1| hypothetical protein COPEUT_00316 [Coprococcus eutactus ATCC 27759]
 gi|158450611|gb|EDP27606.1| hypothetical protein COPEUT_00316 [Coprococcus eutactus ATCC 27759]
          Length = 292

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 39/271 (14%), Positives = 95/271 (35%), Gaps = 21/271 (7%)

Query: 73  WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTK------HIRSGVES 125
             I  Y +        + N+  S+     + +    D    ++              +E 
Sbjct: 3   QYIDRYVEYLRNVKKSSENTIASYRRDLMKFVAYFCDKHLDRLEDITETYITSYVLDMEK 62

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK-- 183
              + ++  + + S++  + + +R+  V  +P  +++ PK   +     T  ++ +    
Sbjct: 63  NGMSMATVSRNIASIKSFYAFLLRERIVDDDPAENIKPPKIVKKVPEILTISEVNKLLSQ 122

Query: 184 --SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241
             +   +  + +   E L  +G+R ++     +  +   +  I+      + TV + +  
Sbjct: 123 PTNKTPKEIRDKAMLELLYATGIRVTELVTLKLTDVNMKLGFIECHDGDRVRTVPVAEVA 182

Query: 242 MKLLAMTPI--------GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRK 291
            + L+            G +  F N     M+   F    K  A KAG++K  + H +R 
Sbjct: 183 QRALSRYITEVRDDMSGGSDYLFFNCKGAPMSRQGFWKIIKYYAAKAGIDKDITPHMIRH 242

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETY 322
             A+   + GA    +    G   +   + Y
Sbjct: 243 SFASHMLNNGADIKSVQEMLGHVDIATTQIY 273


>gi|160934248|ref|ZP_02081635.1| hypothetical protein CLOLEP_03119 [Clostridium leptum DSM 753]
 gi|156866921|gb|EDO60293.1| hypothetical protein CLOLEP_03119 [Clostridium leptum DSM 753]
          Length = 309

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 41/278 (14%), Positives = 98/278 (35%), Gaps = 26/278 (9%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSG------DFDYRKITTKHIRSGVESRKHT 129
            +Y K+     ++ N+  S+    +                      +H    +E    +
Sbjct: 19  QDYLKNQ--KCVSSNTLQSYVRDIEHFSIYLAAENIDNPASVTADDLQHYIESLEKLGRS 76

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKSF 185
            S+  + + S+R  +++ +     + NP   ++R K + +     T E++     Q    
Sbjct: 77  ASTVTRNIASIRCFYQYLILINIASENPAKEIKREKTEKKPPSILTGEEIRLLLDQPNVM 136

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
             +G + +   E L  +G+R S+     +Q +      +  ++  +   + +    +  L
Sbjct: 137 DPKGCRDKAMIELLYATGIRVSELIDLNLQDINLKTGMLHCRRPKSDRIIPIYAEAVASL 196

Query: 246 A----------MTPIGKE--TFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRK 291
           +          + P+GK+    F+N +  ++    F    K  A +A + K  + H +R 
Sbjct: 197 SDYISRVRRIIIDPVGKDGQALFVNLNGHRLTRQGFWKIIKGYAAQARITKDITPHTLRH 256

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             A      GA   ++    G   +   + Y    +  
Sbjct: 257 SFALHLLQNGADLKDIQEMLGHADIASTQVYANLLNNR 294


>gi|319425289|gb|ADV53363.1| tyrosine recombinase XerD [Shewanella putrefaciens 200]
          Length = 300

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 50/288 (17%), Positives = 103/288 (35%), Gaps = 26/288 (9%)

Query: 74  LISEYRKSAHW--GSLAVNSRISFE---SYFDQIIRKSGDFDYRKITT--KHIRSGVESR 126
           LI  +     W    L+ N+  ++     +FD+  ++ G           +   +    +
Sbjct: 10  LIDAFLDDL-WSSKGLSDNTLSAYRTDLRHFDRHQQRHGTTLLEATAADVRSYLALRLEQ 68

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185
               +S+ + L+S+R  + + +  + +A++P   +E PK         ++  + +  +  
Sbjct: 69  HFARTSSARLLSSLRRFYTYLLLTKQIAVDPMALIESPKLTRHLPHSLSESQVDRLLAEP 128

Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGF 241
                   + +   E L  +GLR S+     ++ +      ++   K G    V L +  
Sbjct: 129 NVDDPVECRDKAMLELLYATGLRVSELVGLTMEQMSLRQGLVRIVGKGGKERLVPLGELA 188

Query: 242 MKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGV 289
           +  +                 +  F +N  Q M    F    K  A +AG+    S H +
Sbjct: 189 VTEVEAYLKFARQELLGHKQSDVVFPSNRGQMMTRQTFWHRIKLYALRAGIETALSPHTL 248

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
           R   AT   + GA    +    G   +   + YT  A R RL   + +
Sbjct: 249 RHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVA-RARLQELHQQ 295


>gi|226328247|ref|ZP_03803765.1| hypothetical protein PROPEN_02140 [Proteus penneri ATCC 35198]
 gi|225202980|gb|EEG85334.1| hypothetical protein PROPEN_02140 [Proteus penneri ATCC 35198]
          Length = 312

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 46/265 (17%), Positives = 91/265 (34%), Gaps = 23/265 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
             L+ N+  S+      + +              +  +   +      +  SSA + L++
Sbjct: 33  QGLSANTLSSYRLDLQALGQWLAHHQLDWLSVSTLDLQSFLATRLDEGYKASSAARLLST 92

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195
           MR LF++  R++    +P   +  PK      +  +++ +    +          + +  
Sbjct: 93  MRRLFQYLYREKLRLDDPSALLSTPKLPKRLPKDLSEQQVDDLLNAPCIDEPLELRDKAM 152

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVEL-------PDGFMKLLAM 247
            E L   GLR S+     +  +      ++   K      V L        + +++    
Sbjct: 153 LEVLYACGLRVSELVGLSLSDISLRQGVLRVIGKGDKERLVPLGEEAIYWLEQYLQYGRP 212

Query: 248 TPIGKET---FFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG 301
           T +  +T    F +   QKM    F    K  A  AG++    S H +R   AT   + G
Sbjct: 213 TLMQGKTDDIVFPSLRGQKMTRQTFWHRIKHYAVIAGIDTEKLSPHVLRHAFATHLLNHG 272

Query: 302 ATAHELMATYGWKTVDQAETYTKGA 326
           A    +    G   +   + YT  A
Sbjct: 273 ADLRVVQMLLGHSDLSTTQIYTHVA 297


>gi|92115127|ref|YP_575055.1| tyrosine recombinase XerD subunit [Chromohalobacter salexigens DSM
           3043]
 gi|91798217|gb|ABE60356.1| tyrosine recombinase XerD subunit [Chromohalobacter salexigens DSM
           3043]
          Length = 295

 Score =  144 bits (364), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 48/274 (17%), Positives = 98/274 (35%), Gaps = 22/274 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFD--YRKITTKHIRSGVESRKHT--PSSAIQFLTSM 140
             L+ ++  ++    D  +               + + + + +R+    P S  + L+ +
Sbjct: 18  RGLSQHTLAAYRRDLDAWLAHLAARGACLMAPDEQALETFLAARREHYHPRSVARLLSCL 77

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAF 196
           R  ++WA+ + +V+++P      P+  T+      + ++++  +        G + R   
Sbjct: 78  RRFYRWALAEGHVSVDPLADARAPRAVTKLPDTLDEAEVERLLAAPDVELPLGLRDRTML 137

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM-------- 247
           E L   GLR S+     V  +      ++   K      V L +     LA         
Sbjct: 138 EVLYGCGLRVSELVGLTVDAVNLRQGVLRVLGKGDKERLVPLGEEATAWLARYLRQGRGD 197

Query: 248 --TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGAT 303
                 +   F       M    F    K  A  AG++K  S H +R   AT   + GA 
Sbjct: 198 LMQDPTRPPLFPGRHDGFMTRQTFWHRIKRHAVSAGIDKPLSPHTLRHAFATHLLNHGAN 257

Query: 304 AHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
              +    G   +   + YT+ A + RL   +++
Sbjct: 258 LRVVQMLLGHSDLSTTQIYTQVA-QARLEALHAQ 290


>gi|168752738|ref|ZP_02777760.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC4113]
 gi|168757666|ref|ZP_02782673.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC4401]
 gi|168770287|ref|ZP_02795294.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC4486]
 gi|168784061|ref|ZP_02809068.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC4076]
 gi|195940083|ref|ZP_03085465.1| putative integrase [Escherichia coli O157:H7 str. EC4024]
 gi|208810674|ref|ZP_03252550.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC4206]
 gi|208816586|ref|ZP_03257706.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC4045]
 gi|209399988|ref|YP_002271143.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC4115]
 gi|254793679|ref|YP_003078516.1| putative integrase for prophage CP-933U [Escherichia coli O157:H7
           str. TW14359]
 gi|188013544|gb|EDU51666.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC4113]
 gi|188998687|gb|EDU67673.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC4076]
 gi|189355394|gb|EDU73813.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC4401]
 gi|189360802|gb|EDU79221.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC4486]
 gi|208725190|gb|EDZ74897.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC4206]
 gi|208730929|gb|EDZ79618.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC4045]
 gi|209161388|gb|ACI38821.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC4115]
 gi|254593079|gb|ACT72440.1| putative integrase for prophage CP-933U [Escherichia coli O157:H7
           str. TW14359]
          Length = 359

 Score =  144 bits (364), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 60/330 (18%), Positives = 107/330 (32%), Gaps = 30/330 (9%)

Query: 6   RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
           +LPP V   +       Y   K   R        ES  + A    L     K E   + R
Sbjct: 12  KLPPKVYPNK-------YSVWKPTSR--------ESVTLTAIEDGLAALWKKYEETVNHR 56

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
            +  T   L  ++  SA++  L+  ++  +  +  +++   G      +  +HIR  ++ 
Sbjct: 57  DRAMTFGRLWEKFLASAYYSELSPRTQKDYLQHQKKLLAVFGKVLADSVKPEHIRRYMDK 116

Query: 126 RKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
           R   + + A    +SM  ++ W   + YV  NPC  V + K K       T ++ Q   S
Sbjct: 117 RGEQSKTQANHEKSSMSRVYSWGYERGYVKANPCAGVSKFKAKNRERYV-TDKEYQAVLS 175

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
                    +A E       R SD      + + N+   I+  KTG              
Sbjct: 176 VAPL--PVFIAMEIAYLCAARVSDVLSLKWEQIGNDGIFIQQGKTGKKQIKAWSPRLQAA 233

Query: 245 LAMTP--IGKETFFINNDKQKMNATQFSIWFKAKATKAG------VNKSAHGVRKFSATI 296
           +              N    +     F+  +      AG       + + H + K     
Sbjct: 234 IEKAKQLPTSAYVISNQYGNRYMYKGFNEMWVEARNHAGKISGILTDFTFHDL-KAKGIS 292

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326
             +   ++ +     G KT  Q   Y +  
Sbjct: 293 DYE--GSSRDKQLFSGHKTEGQVLIYDRKV 320


>gi|237711564|ref|ZP_04542045.1| integrase [Bacteroides sp. 9_1_42FAA]
 gi|237725982|ref|ZP_04556463.1| integrase [Bacteroides sp. D4]
 gi|265752992|ref|ZP_06088561.1| tyrosine recombinase XerD [Bacteroides sp. 3_1_33FAA]
 gi|229435790|gb|EEO45867.1| integrase [Bacteroides dorei 5_1_36/D4]
 gi|229454259|gb|EEO59980.1| integrase [Bacteroides sp. 9_1_42FAA]
 gi|263236178|gb|EEZ21673.1| tyrosine recombinase XerD [Bacteroides sp. 3_1_33FAA]
          Length = 308

 Score =  144 bits (364), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 53/276 (19%), Positives = 106/276 (38%), Gaps = 23/276 (8%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQII-----RKSGDFDYRKITTKHIRSGVES 125
             ++ +YR+      SL+ N+  ++ +  D+++           D R    +   +G+  
Sbjct: 8   DKILVKYRQYLKLEKSLSDNTVDAYLTDLDKLLAYLTLENINILDVRLENLEDFSAGLHD 67

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
               P S  + L+ +R  +++ + ++Y+  +P   +E P+   +     T E++      
Sbjct: 68  IGIHPRSQARILSGIRSFYRFLIMEDYLESDPTELLESPQTGFKLPEVMTVEEIDLLIGS 127

Query: 186 WSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-VELPDG 240
              G+    + R   E L   GLR S+ C   +  L      IK +  G+    V +   
Sbjct: 128 IDRGTKEGQRNRAILETLYSCGLRVSELCNLKLSELYFEEGFIKVEGKGSKQRLVPISPR 187

Query: 241 F----------MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288
                        L+ + P  ++  FI+N  + ++        K  A + G+ K  S H 
Sbjct: 188 AIKEIRLYFTDRNLMKIKPGFEDFVFISNFGKNISRIMVFHIIKELAERIGLKKKISPHT 247

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            R   AT   + GA    +    G +++   E YT 
Sbjct: 248 FRHSFATHLLEGGANLRAIQCMLGHESIGTTEIYTH 283


>gi|168778124|ref|ZP_02803131.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC4196]
 gi|187766816|gb|EDU30660.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC4196]
          Length = 359

 Score =  144 bits (364), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 60/330 (18%), Positives = 107/330 (32%), Gaps = 30/330 (9%)

Query: 6   RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
           +LPP V   +       Y   K   R        ES  + A    L     K E   + R
Sbjct: 12  KLPPKVYPNK-------YSVWKPTSR--------ESVTLTAIEDGLAALWKKYEETVNHR 56

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
            +  T   L  ++  SA++  L+  ++  +  +  +++   G      +  +HIR  ++ 
Sbjct: 57  DRAMTFGRLWEKFLASAYYSELSPRTQKDYLQHQKKLLAVFGKVLADSVKPEHIRRYMDK 116

Query: 126 RKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
           R   + + A    +SM  ++ W   + YV  NPC  V + K K       T ++ Q   S
Sbjct: 117 RGEQSKTQANHEKSSMSRVYSWGYERGYVKANPCAGVSKFKAKNRERYV-TDKEYQAVLS 175

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
                    +A E       R SD      + + N+   I+  KTG              
Sbjct: 176 VAPL--PVFIAMEIAYLCAARVSDVLSLKWEQIGNDGIFIQQGKTGKKQIKAWSPRLQAA 233

Query: 245 LAMTP--IGKETFFINNDKQKMNATQFSIWFKAKATKAG------VNKSAHGVRKFSATI 296
           +              N    +     F+  +      AG       + + H + K     
Sbjct: 234 IEKAKQLPTSAYVISNQYGNRYMYKGFNEMWVEARNHAGKMSGILTDFTFHDL-KAKGIS 292

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326
             +   ++ +     G KT  Q   Y +  
Sbjct: 293 DYE--GSSRDKQLFSGHKTEGQVLIYDRKV 320


>gi|261868581|ref|YP_003256503.1| site-specific tyrosine recombinase XerD [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261413913|gb|ACX83284.1| tyrosine recombinase XerD [Aggregatibacter actinomycetemcomitans
           D11S-1]
          Length = 297

 Score =  144 bits (364), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 40/268 (14%), Positives = 87/268 (32%), Gaps = 23/268 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYR-----KITTKHIRSGVESRKHTPSSAIQFLTS 139
             L+ N+  S+      +                +  +        + +  +S  + L++
Sbjct: 18  KGLSPNTVESYRLDLTALCDWLEARHLSLLGLDAVDLQAFLGERVEQGYKATSTARLLSA 77

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLA 195
           MR LF++  +++Y   +P   +  PK  +   +  T++ +    +          + +  
Sbjct: 78  MRKLFQYLYQEKYRTDDPSAVLSSPKLPSRLPKYLTEQQVTDLLNVQSLEQPIELRDKAM 137

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLA-----MTP 249
            E L  +GLR ++        +  N   ++   K      V + +     +        P
Sbjct: 138 LELLYATGLRVTELVSLNTDSINLNQGVVRVIGKGKKERIVPMGEEATHWVKQFMLFARP 197

Query: 250 I-----GKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG 301
           +       +  F +    +M    F    K  A  A ++    S H +R   AT   + G
Sbjct: 198 MLLDGQSSDVLFPSRRGTQMTRQTFWHRIKHYAVLAEIDSEMLSPHVLRHAFATHLVNHG 257

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRI 329
           A    +    G   +   + YT  A   
Sbjct: 258 ADLRVVQMLLGHSDLSTTQIYTHVAKER 285


>gi|259909555|ref|YP_002649911.1| Tyrosine recombinase [Erwinia pyrifoliae Ep1/96]
 gi|224965177|emb|CAX56709.1| Tyrosine recombinase [Erwinia pyrifoliae Ep1/96]
          Length = 309

 Score =  144 bits (364), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 47/284 (16%), Positives = 100/284 (35%), Gaps = 27/284 (9%)

Query: 73  WLISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVES 125
            LI ++   A W   +LA N+  S+      +            +      +   +    
Sbjct: 17  DLIEQFL-DALWIERNLAQNTVDSYRLDLRSLGDWLAHQQLSLLNVEVFNLQEFLAQRLE 75

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
             +  +S+ + L++MR LF++  R++    +P   +  PK      +  ++  +++    
Sbjct: 76  GGYKATSSARLLSAMRRLFQYLYREKLREDDPSALLSSPKLPQRLPKDLSEAQVERLLQA 135

Query: 186 ----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240
                    + +   E L  +GLR ++     +  +      ++   K      V + + 
Sbjct: 136 PCLEQPIELRDKAMLELLYATGLRVTELVGLTLSDISLRQGVVRVIGKGNKERLVPMGEE 195

Query: 241 FMKLLAMTPIGKETFFIN----------NDKQKMNATQFSIWFKAKATKAGVN---KSAH 287
            +  +         + +N          N  ++M    F    K  AT AG++    S H
Sbjct: 196 AVHWIEQYIEYGRPWLLNGQTIDVLFPSNRAKQMTRQTFWHRIKHYATLAGIDSDKLSPH 255

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIR 330
            +R   AT   + GA    +    G   +   + YT  A +R+R
Sbjct: 256 VLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLR 299


>gi|310766537|gb|ADP11487.1| Tyrosine recombinase xerD [Erwinia sp. Ejp617]
          Length = 297

 Score =  144 bits (364), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 47/284 (16%), Positives = 100/284 (35%), Gaps = 27/284 (9%)

Query: 73  WLISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVES 125
            LI ++   A W   +LA N+  S+      +            +      +   +    
Sbjct: 5   DLIEQFL-DALWIERNLAQNTVDSYRLDLRSLGDWLAHQQLSLLNVEVFNLQEFLAQRLE 63

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
             +  +S+ + L++MR LF++  R++    +P   +  PK      +  ++  +++    
Sbjct: 64  GGYKATSSARLLSAMRRLFQYLYREKLREDDPSALLSSPKLPQRLPKDLSEAQVERLLQA 123

Query: 186 ----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240
                    + +   E L  +GLR ++     +  +      ++   K      V + + 
Sbjct: 124 PCLEQPIELRDKAMLELLYATGLRVTELVGLTLSDISLRQGVVRVIGKGNKERLVPMGEE 183

Query: 241 FMKLLAMTPIGKETFFIN----------NDKQKMNATQFSIWFKAKATKAGVN---KSAH 287
            +  +         + +N          N  ++M    F    K  AT AG++    S H
Sbjct: 184 AVHWIEQYIEYGRPWLLNGQTIDVLFPSNRAKQMTRQTFWHRIKHYATLAGIDSDKLSPH 243

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIR 330
            +R   AT   + GA    +    G   +   + YT  A +R+R
Sbjct: 244 VLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLR 287


>gi|315640591|ref|ZP_07895697.1| integrase/recombinase XerD [Enterococcus italicus DSM 15952]
 gi|315483619|gb|EFU74109.1| integrase/recombinase XerD [Enterococcus italicus DSM 15952]
          Length = 296

 Score =  144 bits (364), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 45/264 (17%), Positives = 103/264 (39%), Gaps = 24/264 (9%)

Query: 85  GSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFLT 138
             L++N+R S+E    Q    ++      +++I    I + +E  K    + ++  + ++
Sbjct: 16  RGLSLNTRSSYERDLKQYYTFVQTKQITSWQQIDRYTILAFLEQLKKENKSTATITRMIS 75

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRL 194
           S+R   ++  ++ +   +P   ++ PK+  +     + +++++           G + R 
Sbjct: 76  SLRRFHQFLRQERHTDHDPMQHIDTPKKVQKLPDTLSLKEVERLIDTPDTRKILGIRDRA 135

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPD-----------GFM 242
             E +  +GLR S+  +  +  +  N+  ++T  K      V L D              
Sbjct: 136 ILEVMYATGLRVSELIQLQLSDIHLNMALLQTIGKGDKERIVPLGDMAIHWLEVYLSDAR 195

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADA 300
            +L      +   F+N+  +K+         K     AG++K+   H +R   AT   + 
Sbjct: 196 PILVSKQPNETALFVNSHGKKLTRQGIWKNLKEIVRAAGIHKTVTPHTLRHSFATHLLEN 255

Query: 301 GATAHELMATYGWKTVDQAETYTK 324
           GA    +    G   +   + YT 
Sbjct: 256 GADLRTVQELLGHADISTTQIYTH 279


>gi|253997434|ref|YP_003049498.1| tyrosine recombinase XerD [Methylotenera mobilis JLW8]
 gi|253984113|gb|ACT48971.1| tyrosine recombinase XerD [Methylotenera mobilis JLW8]
          Length = 302

 Score =  144 bits (364), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 56/283 (19%), Positives = 102/283 (36%), Gaps = 25/283 (8%)

Query: 72  KWLISEYRKSAHWGS--LAVNSRISFESYFDQII--RKSGDFDYRKITTKHIRSGVESR- 126
              I  +   A W    L+ N+  S+            S       I    ++  +  + 
Sbjct: 11  AAAIDSFL-DAIWLEDGLSKNTLDSYRLDLTAFAIWASSQHKQLLTIDKADVQQYLAVKF 69

Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
               P S  + + S+R  +++ +R+  +AI+P L +E PK      +   +E++    + 
Sbjct: 70  PLSKPRSIGRLIASLRRFYRYNLRENLIAIDPTLQIESPKLPRSLPKSLNEEEVMALLNA 129

Query: 186 WSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-VELPDG 240
            +     G + +   E L  SGLR S+        +  +   ++    G+    V + + 
Sbjct: 130 PNVDDVVGLRDKAMLELLYASGLRVSELVSIKTSEVSMSDSVVRVTGKGSKTRLVPMGEN 189

Query: 241 FMKLL-----AMTP-----IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288
            ++ +     A  P        +  F+ N    M    F    K  A  AG+ K  S H 
Sbjct: 190 AVEWISHYLKAARPQILQNRLSDALFVTNRGDAMTRQTFWHMIKRYALLAGITKHMSPHV 249

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           +R   AT   + GA    +    G   +   + YT  A R RL
Sbjct: 250 LRHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTYVA-RERL 291


>gi|224025282|ref|ZP_03643648.1| hypothetical protein BACCOPRO_02021 [Bacteroides coprophilus DSM
           18228]
 gi|224018518|gb|EEF76516.1| hypothetical protein BACCOPRO_02021 [Bacteroides coprophilus DSM
           18228]
          Length = 314

 Score =  144 bits (364), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 56/286 (19%), Positives = 109/286 (38%), Gaps = 24/286 (8%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GD--FDYRKITTKHIRSGVES 125
             +I++Y++      S + N+  ++ +  D+++      G    +      +   +G+  
Sbjct: 8   GKIITKYKQYLKLEKSFSSNTIDAYLTDLDKLMAYLTLEGKDCLEVTLDDLETFSAGLHD 67

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
                 S  + L+ +R  +++ + ++Y+  +PC  +E P+         T E++ +    
Sbjct: 68  IGINARSQARILSGVRAFYRFLLLEDYIQQDPCELLESPQTGRHLPDVLTVEEIDRLIGS 127

Query: 186 WS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-VELPDG 240
                 EG + R   E L   GLR S+ C   +  L  N   IK +  G+    V +   
Sbjct: 128 IDRSSREGQRNRAILETLYSCGLRVSELCNLKLSDLYLNEGFIKVEGKGSKQRLVPISPK 187

Query: 241 F----------MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288
                           + P  ++  FI+   + ++        K  A  AG+ K  S H 
Sbjct: 188 AISELNNYFPNRNAGLIKPGYEDFVFISRFGKNISRIMVFHIIKELAGMAGIKKTISPHT 247

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIK 334
            R   AT   + GA    +    G +++   E YT   DR RL  +
Sbjct: 248 FRHSFATHLLEGGANLRAIQCMLGHESIGTTEIYTH-IDRNRLRQE 292


>gi|126173088|ref|YP_001049237.1| tyrosine recombinase XerD [Shewanella baltica OS155]
 gi|125996293|gb|ABN60368.1| tyrosine recombinase XerD [Shewanella baltica OS155]
          Length = 309

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 50/275 (18%), Positives = 98/275 (35%), Gaps = 23/275 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKI-----TTKHIRSGVESRKHTPSSAIQFLTS 139
             L+ N+  ++ +      R  G      +       +   +    +    +S+ + L+S
Sbjct: 31  KGLSDNTLSAYRTDLRHFDRYQGQQGVTLLAVSQADVRAYLAFRVEQDFARTSSARLLSS 90

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195
           +R  + + V+ + +  +P   VE PK         ++  + +  S      +   + +  
Sbjct: 91  LRRFYTYLVQTKQILADPMALVESPKLTRHLPDSLSESQVDRLLSEPNVEDAVECRDKAM 150

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPD-------GFMKLLAM 247
            E L  +GLR S+     ++ +      ++   K G    V L +        +MK    
Sbjct: 151 LELLYATGLRVSELVGLTMEQMSLRQGLVRIVGKGGKERLVPLGELAITEVESYMKFARQ 210

Query: 248 TPIGK---ETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGA 302
             +G    +  F +   Q M    F    K  A +AG+    S H +R   AT   + GA
Sbjct: 211 ELLGNKQSDVVFPSKRGQMMTRQTFWHRIKLYALRAGIETALSPHTLRHAFATHLLNHGA 270

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
               +    G   +   + YT  A R RL   + +
Sbjct: 271 DLRVVQLLLGHSDLSTTQIYTHVA-RARLQELHQQ 304


>gi|152981084|ref|YP_001352164.1| integrase/recombinase [Janthinobacterium sp. Marseille]
 gi|151281161|gb|ABR89571.1| integrase/recombinase [Janthinobacterium sp. Marseille]
          Length = 301

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 46/268 (17%), Positives = 87/268 (32%), Gaps = 23/268 (8%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS-----GVESRKHTPSSAIQFLTSM 140
            LA NS  ++                + +   H          +      +S+ + L  +
Sbjct: 24  GLAKNSLEAYRRDLRLFATWLQQERGKSLLAAHTEDLNGYFFAKHATTKATSSNRRLAVL 83

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAF 196
           +  ++ A+RQ  +  +PCL +   K+     +  ++  ++   +        G + R   
Sbjct: 84  KRFYQLALRQNKIKDDPCLRLRSAKQPPRMPKTLSEAQVEALLAAPDVNTPLGLRDRTML 143

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAMTPIG---- 251
           E +  SGLR ++        +  N   ++ T K G    +   +     +          
Sbjct: 144 ELMYASGLRVTELVLLKSVEVGMNEGVLRVTGKGGKTRLIPFGEEARAWIERYLKEARGA 203

Query: 252 ------KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGAT 303
                  +  F+      M    F    K  A  A +N   S H +R   AT   + GA 
Sbjct: 204 ILNGQMDDALFVTARGGAMTRQMFWTLIKKHAAAADINAPLSPHTLRHAFATHLLNHGAD 263

Query: 304 AHELMATYGWKTVDQAETYTKGADRIRL 331
              +    G   +   + YT  A R RL
Sbjct: 264 LRVVQLLLGHSDISTTQIYTHVA-RERL 290


>gi|308274298|emb|CBX30897.1| Tyrosine recombinase xerD [uncultured Desulfobacterium sp.]
          Length = 298

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 42/280 (15%), Positives = 91/280 (32%), Gaps = 24/280 (8%)

Query: 71  LKWLISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI------RSGV 123
           +  L+ +Y         L+  +  S+ S     I   G    + I+             +
Sbjct: 4   IDSLVDQYLNYLVVEKGLSKKTLESYGSDIATYIDFLGKKGIKDISEADTPTILMHIIAL 63

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
                   S  + L ++R  +K+ VR++ +  +P   ++ PK         T+++++   
Sbjct: 64  REDGLKARSRARHLVTLRGFYKFLVREKLITTDPTRVIDLPKSGFYLPNVLTQDEVKSLL 123

Query: 184 SFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELP 238
           S        G +     E L  +GLR S+     +  +  +   ++   K      V + 
Sbjct: 124 SVPDVSKPAGLRDSAMIELLYAAGLRVSELVGLKLFDVNMDACFVRVFGKGSKERIVPIG 183

Query: 239 DGFMKLLAMTPIGKETFFINND----------KQKMNATQFSIWFKAKATKAGVNKS--A 286
               + ++          + N+           + +    F    K  +T   + K+   
Sbjct: 184 TFAKEKVSEYINTARPLILKNNMSNFLFVGRGGKPLTRQGFWKIIKRYSTLGKITKTITP 243

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           H +R   AT   + GA    +    G   +   + YT   
Sbjct: 244 HSLRHSFATHLLEGGADLRSVQLMLGHVDISTTQIYTHVV 283


>gi|312900737|ref|ZP_07760034.1| tyrosine recombinase XerD [Enterococcus faecalis TX0470]
 gi|295112966|emb|CBL31603.1| tyrosine recombinase XerD subunit [Enterococcus sp. 7L76]
 gi|311292218|gb|EFQ70774.1| tyrosine recombinase XerD [Enterococcus faecalis TX0470]
 gi|315169704|gb|EFU13721.1| tyrosine recombinase XerD [Enterococcus faecalis TX1342]
          Length = 296

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 47/274 (17%), Positives = 108/274 (39%), Gaps = 27/274 (9%)

Query: 85  GSLAVNSRISFESYFDQ---IIRKSG----DFDYRKITTKHIRSGVESRKHTPSSAIQFL 137
             L+ N+R S+E    +    +++ G    D   R + T+ ++S  E ++ + +S I+ +
Sbjct: 16  RGLSNNTRRSYERDLKKYVAFLQEQGLHSWDEVDRYMITEFLQSLHEEQQAS-ASVIRMI 74

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFWSEGSQPR 193
           +S+R   ++  ++     NP   ++ PK+  +     + ++    ++   +    G + R
Sbjct: 75  SSLRGFHQFLRQERLSEHNPMQHIDSPKKVQKLPSTLSVDEVTRLIEAPDTSKPLGMRNR 134

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM----- 247
              E +  +GLR S+     +  L  +I  ++T  K      + L D  ++ +       
Sbjct: 135 AILEVMYATGLRVSELIEIKLGDLHLSIGLLQTIGKGDKERIIPLGDYAIQWIERYMNEA 194

Query: 248 ------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
                     +   F+N+  + ++        K    +A + K  + H +R   AT   +
Sbjct: 195 RPQLIKNHPNETHLFVNHHGEPLSRQGIWKNLKQIVREAQIEKNITPHTLRHSFATHLLE 254

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
            GA    +    G   +   + YT    + R+  
Sbjct: 255 NGADLRIVQELLGHADISTTQIYTH-ITKQRMAD 287


>gi|23505472|ref|NP_700401.1| Integrase protein [Salmonella phage ST64B]
 gi|167995270|ref|ZP_02576360.1| integrase protein [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|207857414|ref|YP_002244065.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|23379219|gb|AAL25906.1| Sb28 [Salmonella phage ST64B]
 gi|205327035|gb|EDZ13799.1| integrase protein [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|206709217|emb|CAR33550.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|261247218|emb|CBG25042.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|267994049|gb|ACY88934.1| integrase protein [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 14028S]
 gi|301158562|emb|CBW18073.1| bacteriophage integrase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|323130323|gb|ADX17753.1| Integrase protein [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
 gi|326623804|gb|EGE30149.1| Integrase protein [Salmonella enterica subsp. enterica serovar
           Dublin str. 3246]
          Length = 329

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 63/325 (19%), Positives = 117/325 (36%), Gaps = 36/325 (11%)

Query: 24  YFRKGHGRRIRLPYPHES--TFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKS 81
           Y+ K  G    +     +      AY   + G           RK   T   L  ++  S
Sbjct: 23  YYWKPGGSTENIAPADATKAEVWVAYEKKVEG-----------RKNRITFTQLWRKFLAS 71

Query: 82  AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS-SAIQFLTSM 140
           A +  LA  ++  + ++   I+   GD + + I  +HIR  +++R       A    +SM
Sbjct: 72  ADYADLAPRTQKDYLAHEKYILAVFGDAEAKAIKPEHIRRYMDARGQKSRVQANHEHSSM 131

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP-RLAFEFL 199
             +F+W+ ++ YV  NPC+ V++   K +  R  T E+   +++ ++  +   R A E  
Sbjct: 132 SRVFRWSYQRGYVPGNPCVGVDKFP-KPQRDRYITDEE---YRAIYNNATPAVRAAMEIA 187

Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL--LAMTPIGKETFFI 257
                R SD  +     +      I+  KTG        D       +      +     
Sbjct: 188 YLCAARVSDVLKMNWNQILEKGIFIQQGKTGVKQIKSWTDRLRDAVEICREWGEEGPVIR 247

Query: 258 NNDKQKMNATQFSIWFKAKATKAG------VNKSAHGVRKFSATISADAGATAHELMATY 311
               ++ +   F+  ++     AG      ++ + H + K       +   TA +     
Sbjct: 248 TMYGERYSYKGFNEAWRKARKAAGDDLGRPLDCTFHDL-KAKGISDYE--GTAKDKQKYS 304

Query: 312 GWKTVDQAETYTKGA------DRIR 330
           G KT  Q   Y +        DR R
Sbjct: 305 GHKTESQVLVYDRKVKMSPTLDRKR 329


>gi|149377067|ref|ZP_01894817.1| integrase/recombinase XerD [Marinobacter algicola DG893]
 gi|149358603|gb|EDM47075.1| integrase/recombinase XerD [Marinobacter algicola DG893]
          Length = 310

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 51/270 (18%), Positives = 96/270 (35%), Gaps = 25/270 (9%)

Query: 86  SLAVNSRISFESYFDQII----RKSGDFDYRKITTKHIRSGVES---RKHTPSSAIQFLT 138
            L   +R ++ S  +++      + G     ++    + S +          S+A + L+
Sbjct: 31  GLGEKTRQAYRSDLERLAAWLQEQPGKPLLTEVRRTDLLSWISRGLSDGFKTSTAARRLS 90

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRL 194
            +R  F++ +R+  +A +P L ++ P+         +++D++   S          + + 
Sbjct: 91  GLRRFFRYLLREGVIAEDPTLRIDSPRLPRRLPDSLSEDDVENLLSEPDPEVPIELRDKA 150

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAM------ 247
             E L   GLR S+     V  +      ++   K      V L +  +  L        
Sbjct: 151 MMEILYGCGLRVSELVALTVDEVNLRQGVVRIVGKGNKERLVPLGEEAVDWLVRYMREGR 210

Query: 248 ----TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301
                       F  N    M    F    K  A +AG++K  S H +R   AT   + G
Sbjct: 211 GELLKGRASNALFPGNRPTAMTRQTFWHRIKHYALRAGIHKHLSPHTLRHAFATHLLNHG 270

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRL 331
           A    +    G   +   + YT  A R RL
Sbjct: 271 ADLRVVQMLLGHSDLSTTQIYTHVA-RQRL 299


>gi|294501141|ref|YP_003564841.1| tyrosine recombinase XerD [Bacillus megaterium QM B1551]
 gi|294351078|gb|ADE71407.1| tyrosine recombinase XerD [Bacillus megaterium QM B1551]
          Length = 297

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 39/272 (14%), Positives = 99/272 (36%), Gaps = 26/272 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFD-------YRKITTKHIRSGVESRKHTPSSAIQFL 137
             LA N+  S+E    +  +     +         ++   +    +  ++ +  +  + +
Sbjct: 16  RGLAKNTIDSYERDLKKYAQYLEHVEQLKSFNEVTRLHIVNFLKYLSDQQKSSKTIARHV 75

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ----FKSFWSEGSQPR 193
            S R   ++ +R++    +P + ++ P+ + +  +    E+++     F +    G + +
Sbjct: 76  ASTRSFHQFLLREKAADTDPSVHIDTPQLERKLPKVLNAEEVEALLNVFDTSTPFGIRDK 135

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMK- 243
              E L  +G+R S+     +      +  I+    G    +          + +     
Sbjct: 136 AMLELLYATGIRVSELVNLNIDDAHLTMGFIRCIGKGNKERIVPIGRLATEAIEEYLQHS 195

Query: 244 --LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
             +L       +  F+N+  +++    F    K  A++A + K  + H +R   AT   +
Sbjct: 196 RSVLTKQKEQDKALFVNHHGRRLTRQGFWKILKKLASEAKIEKELTPHTLRHSFATHLLE 255

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            GA    +    G   +   + YT    + RL
Sbjct: 256 NGADLRAVQEMLGHADISTTQIYTH-VTKARL 286


>gi|170760942|ref|YP_001787191.1| tyrosine recombinase XerD [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169407931|gb|ACA56342.1| tyrosine recombinase XerD [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 291

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 42/282 (14%), Positives = 106/282 (37%), Gaps = 21/282 (7%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVESR 126
           K +I  Y K     +L+ N+  ++    ++      +          +T       ++  
Sbjct: 2   KNIIENYIKDLQKKNLSKNTLEAYRRDVEKFSEFVRNREEKMLSVDTVTIMAFVQYLQRE 61

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
               SS ++ + S+R  +K+ +++  ++ +P L  E PK +    +  + E++ +  +  
Sbjct: 62  GRATSSIVRNIVSIRNFYKYLIKKNMISEDPTLGYEIPKIERTIPKILSVEEVDKLLNSP 121

Query: 187 S---EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG--- 240
               +G + +   E +  +G++ ++     +  +      IK + +     + +P G   
Sbjct: 122 DSSKKGLRDKAMLELMYATGVKITELLNLNIYDINLKFNYIKCRGSKKRERI-IPIGSYA 180

Query: 241 ---FMKLLAMTPIGK----ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRK 291
                  L + P       +  F+N    +M    F    K  A +A ++K   ++ +R 
Sbjct: 181 IKCLKNYLEVRPAINVYNLDYLFLNLKGTQMTRQGFWKIIKFYAKEASIDKEIDSYTLRH 240

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
             A      GA    +    G K +   + Y+  + + ++  
Sbjct: 241 SFAVHLLQNGADIKSVQELLGHKDLAATQIYSSISKKSKIAE 282


>gi|154498071|ref|ZP_02036449.1| hypothetical protein BACCAP_02052 [Bacteroides capillosus ATCC
           29799]
 gi|150273061|gb|EDN00218.1| hypothetical protein BACCAP_02052 [Bacteroides capillosus ATCC
           29799]
          Length = 298

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 41/266 (15%), Positives = 95/266 (35%), Gaps = 24/266 (9%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTK--------HIRSGVESRKHTPSSAIQFLTS 139
              S  +  SY   I + +G  +   +T +             +  +  + ++  + L S
Sbjct: 21  KKASLNTLSSYLRDIHQYAGWLEGESLTAEQANQADVERYVKHLSGKGKSVATVTRSLAS 80

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLA 195
           M+  + + +    V INP   +   K + +  +  T +++  F          G + +  
Sbjct: 81  MKSFYNFLIGAGVVTINPVRGITPAKVERKLPQILTSKEVDLFLEQPDPSDAKGCRDKAM 140

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM-------- 247
            E L  +G+R S+     ++H+  +   ++         + L    ++ L          
Sbjct: 141 LELLYATGIRVSELIGLNLEHVNLSAGFVRCVGRSKERIIPLYPAAVRALTAYMTQVRPQ 200

Query: 248 --TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGAT 303
                 ++  F+N + ++M+   F    K    KAG+ K  + H +R   A    + GA 
Sbjct: 201 MIEHPDEKALFVNMNGERMSRQGFWKIIKHYQEKAGIRKDITPHTLRHSFAAHLLENGAD 260

Query: 304 AHELMATYGWKTVDQAETYTKGADRI 329
              +    G   +   + Y +  ++ 
Sbjct: 261 LRSIQEMLGHADISSTQIYAQLVNQK 286


>gi|325983273|ref|YP_004295675.1| tyrosine recombinase XerD [Nitrosomonas sp. AL212]
 gi|325532792|gb|ADZ27513.1| tyrosine recombinase XerD [Nitrosomonas sp. AL212]
          Length = 303

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 54/277 (19%), Positives = 105/277 (37%), Gaps = 26/277 (9%)

Query: 86  SLAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFL 137
            L+ N+  S+ +           R   +    + T   +   + SR   K   S+  + L
Sbjct: 23  GLSRNTLDSYRNDLQLFSEWLKRRNPSNSMLTEATNSDLLEFLASRVAAKMKASTTSREL 82

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPR 193
           +S++  +++ +RQ  +AI+P L++E PK +       ++++++   S        G + R
Sbjct: 83  SSLKRFYRFLLRQGKIAIDPSLNIETPKLQRHLPESLSEKEVELLLSAPDLAQPLGLRDR 142

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-ELPDGFMKLLAMTPIGK 252
              E L  SGLR S+        +  ++  ++    G    +  + +  ++ L       
Sbjct: 143 AMLEALYASGLRVSELINLKYSQVSMDMGVLRVMGKGRKERLAPVGEESLQWLNRYTKEA 202

Query: 253 ----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
                     +T F+      M    F    K  A   G+ K  S H +R   AT   + 
Sbjct: 203 RPLLLNGIVTDTIFVTTRGAAMTRQAFWYLIKRYAQLVGIAKQLSPHTLRHAFATHLLNH 262

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
           GA    +    G   +   + YT  A R RL   +++
Sbjct: 263 GADLRVVQLLLGHADISTTQIYTHIA-RERLKQLHAK 298


>gi|91776681|ref|YP_546437.1| tyrosine recombinase XerD [Methylobacillus flagellatus KT]
 gi|91710668|gb|ABE50596.1| Tyrosine recombinase XerD [Methylobacillus flagellatus KT]
          Length = 277

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 53/268 (19%), Positives = 97/268 (36%), Gaps = 25/268 (9%)

Query: 87  LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS-----GVESRKHTPSSAIQFLTSMR 141
           +A N+  S+                R +                 +  P S  + + S+R
Sbjct: 1   MAKNTLTSYRQDLAAFAAWLQQTRRRAMLEAGPEDIQGFIAFRFPQSQPRSISRLVASLR 60

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLAFE 197
             +++A+R+ Y++ +P + +E PK      +  +++++++  +        G + R   E
Sbjct: 61  RFYRFALRESYISADPSIHIESPKLPRSLPKSLSEDEVERLINAPDTNTNLGLRDRAMLE 120

Query: 198 FLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAM-------- 247
            L  +GLR S+     V  L   + +  I T K      V L +  ++ LA         
Sbjct: 121 TLYATGLRVSELVGMHVTELSLTDGVVRI-TGKGSKTRLVPLGEQAVEWLARYLQEGRPS 179

Query: 248 --TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGAT 303
                  +  F+    + M    F    K  A  AG+  S   H +R   AT   + GA 
Sbjct: 180 ILQQRLSDHLFVTQRGEGMTRQAFWYLIKRYAAIAGIQASLSPHVLRHAFATHLLNHGAD 239

Query: 304 AHELMATYGWKTVDQAETYTKGADRIRL 331
              +    G   +   + YT  A R RL
Sbjct: 240 LRVVQMLLGHADISTTQIYTHVA-RERL 266


>gi|212638838|ref|YP_002315358.1| site-specific tyrosine recombinase XerD [Anoxybacillus flavithermus
           WK1]
 gi|212560318|gb|ACJ33373.1| Site-specific recombinase XerD [Anoxybacillus flavithermus WK1]
          Length = 300

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 40/266 (15%), Positives = 98/266 (36%), Gaps = 26/266 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDF-------DYRKITTKHIRSGVESRKHTPSSAIQFL 137
            +LA N+ +S+E    + ++            D  +         ++ +  +P +  + L
Sbjct: 18  RNLAHNTIVSYERDLKKYVQYLQKVEQLCHWNDVTRFHIMQFLKFLKEKGSSPKTIARHL 77

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPR 193
            S+R   ++ +R++ V  +P + +E P+   +     +  +++       + +    + +
Sbjct: 78  ASVRSFHQFLLREKAVDQDPTVHIETPQLPRKLPNVLSMAEVEALLEAPKQNTPFSIRDK 137

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-------------ELPDG 240
              E L  +G+R S+  +  +  +   +  I+    G    +              +  G
Sbjct: 138 AMLELLYATGIRVSELIQLNISDVHLTMGFIRCYGKGRKERIVPIGKMATEALKRYIEQG 197

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISA 298
             +LL       +  F+N+  +++         K  A +A + K  + H +R   AT   
Sbjct: 198 RPELLQRKKGTTDALFLNHHGERLTRQGCWKILKRLAQEANIQKQLTPHTLRHSFATHLL 257

Query: 299 DAGATAHELMATYGWKTVDQAETYTK 324
           + GA    +    G   +   + YT 
Sbjct: 258 ENGADLRAVQEMLGHADISTTQIYTH 283


>gi|322831506|ref|YP_004211533.1| tyrosine recombinase XerD [Rahnella sp. Y9602]
 gi|321166707|gb|ADW72406.1| tyrosine recombinase XerD [Rahnella sp. Y9602]
          Length = 319

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 47/271 (17%), Positives = 99/271 (36%), Gaps = 24/271 (8%)

Query: 85  GSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTS 139
            +LA N+  S+      ++      + D   ++ + ++  +  R    +  +S+ + L++
Sbjct: 40  RNLAENTLSSYRQDLKSLLGWLHHNNTDLLHVSAEDLQLFLSERIEGGYKATSSARLLSA 99

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLA 195
           MR LF++  R+     +P   +  PK      +  ++  +    +          + +  
Sbjct: 100 MRRLFQYMNRESVRQDDPTALLSSPKLPQRLPKDLSEAQVDALLASPSVDVPLELRDKAM 159

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKET 254
            E L  +GLR S+     +  L      ++   K      V + +  +  +         
Sbjct: 160 LELLYATGLRVSELVGLTLSDLSLRQGVVRVIGKGNKERLVPMGEEAVYWIENYFEHGRP 219

Query: 255 FFIN----------NDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATISADAG 301
           + +N          N  Q+M    F    K  A  AG++    S H +R   AT   + G
Sbjct: 220 WLLNGQSLDVVFPSNRAQQMTRQTFWHRIKHYAILAGIDAERLSPHVLRHAFATHLLNHG 279

Query: 302 ATAHELMATYGWKTVDQAETYTKGA-DRIRL 331
           A    +    G   +   + YT  A +R++L
Sbjct: 280 ADLRVVQMLLGHSDLSTTQIYTHVATERLKL 310


>gi|237717200|ref|ZP_04547681.1| integrase [Bacteroides sp. D1]
 gi|262405968|ref|ZP_06082518.1| tyrosine recombinase XerD [Bacteroides sp. 2_1_22]
 gi|294647940|ref|ZP_06725492.1| tyrosine recombinase XerD [Bacteroides ovatus SD CC 2a]
 gi|294806338|ref|ZP_06765185.1| tyrosine recombinase XerD [Bacteroides xylanisolvens SD CC 1b]
 gi|298479972|ref|ZP_06998171.1| tyrosine recombinase XerD [Bacteroides sp. D22]
 gi|229443183|gb|EEO48974.1| integrase [Bacteroides sp. D1]
 gi|262356843|gb|EEZ05933.1| tyrosine recombinase XerD [Bacteroides sp. 2_1_22]
 gi|292636848|gb|EFF55314.1| tyrosine recombinase XerD [Bacteroides ovatus SD CC 2a]
 gi|294446594|gb|EFG15214.1| tyrosine recombinase XerD [Bacteroides xylanisolvens SD CC 1b]
 gi|295085584|emb|CBK67107.1| tyrosine recombinase XerD subunit [Bacteroides xylanisolvens XB1A]
 gi|298273781|gb|EFI15343.1| tyrosine recombinase XerD [Bacteroides sp. D22]
          Length = 319

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 52/275 (18%), Positives = 102/275 (37%), Gaps = 24/275 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVESRK 127
           +I +Y++      SL++N+  ++ +  D++     +      D      +   +G+    
Sbjct: 16  IIRKYQQYLKLEKSLSLNTLDAYLTDLDKLMSFLTLEGIYVLDVCLSDLQRFAAGLHDIG 75

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
             P S  + L+ ++  F++ + + Y+  +P   +E PK   +     T E++ +  S   
Sbjct: 76  IHPRSQARILSGIKSFFRFLILENYLEADPSELLEGPKIGFKLPEVLTVEEIDRIISAVD 135

Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-VELPDGFM 242
               EG + R   E L   GLR S+     +  L  +   IK +  G+    V +    +
Sbjct: 136 RSKAEGQRNRAILETLYSCGLRVSELITLKLSDLYFDEGFIKVEGKGSKQRLVPISPRAI 195

Query: 243 KLLAMTPIG-----------KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289
             + +                  F      + ++        K  A KAG+ K  S H  
Sbjct: 196 NEIKLYITDRNQIEVKKGHEDFVFVSQRRGKGLSRIMIFHMIKELAQKAGITKNISPHTF 255

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           R   AT   + GA    +    G +++   E YT 
Sbjct: 256 RHSFATHLLEGGANLRAIQCMLGHESIATTEIYTH 290


>gi|145640252|ref|ZP_01795836.1| tyrosine recombinase [Haemophilus influenzae R3021]
 gi|145274838|gb|EDK14700.1| tyrosine recombinase [Haemophilus influenzae 22.4-21]
          Length = 297

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 48/284 (16%), Positives = 98/284 (34%), Gaps = 27/284 (9%)

Query: 73  WLISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFDYR-----KITTKHIRSGVES 125
            LI  +     W    L+ N+  S+      +       D        +  +        
Sbjct: 5   ALIDLFLNEY-WIEKGLSENTVQSYRLDLTALCDWLDKNDLSLETLDSVDLQGFLGERLE 63

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS- 184
           + +  +S  + L++MR LF++  R++Y   +P   +  PK  +   +  T++ +    + 
Sbjct: 64  KGYKATSTARMLSAMRKLFQYLYREKYRVDDPSAVLSSPKLPSRLPKYLTEQQVSDLLNT 123

Query: 185 ---FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240
                    + +   E L  +GLR ++     ++++      ++   K      V + + 
Sbjct: 124 PDVEVPLELRDKAMLELLYATGLRVTELVSLTIENMSVQQGVVRVIGKGNKERIVPMGEE 183

Query: 241 FMKL-----LAMTPI-----GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAH 287
                    L   P+       +  F +   Q+M    F    K  A  A ++    S H
Sbjct: 184 AAYWVRQFMLYGRPVLLNGQSSDVVFPSQRTQQMTRQTFWHRVKHYAILADIDADALSPH 243

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            +R   AT   + GA    +    G   +   + YT  A + RL
Sbjct: 244 VLRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVA-KERL 286


>gi|319778432|ref|YP_004129345.1| Tyrosine recombinase XerD [Taylorella equigenitalis MCE9]
 gi|317108456|gb|ADU91202.1| Tyrosine recombinase XerD [Taylorella equigenitalis MCE9]
          Length = 297

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 48/281 (17%), Positives = 92/281 (32%), Gaps = 25/281 (8%)

Query: 74  LISEYRKSAHWGS--LAVNSRISFESYFDQIIRKSGD-FDYRKITTKHIRSGVE--SRKH 128
            I  +  S  W    L+ N+  S+    + +     D     KI +  +       S   
Sbjct: 8   WIDRFIDSL-WLEEGLSKNTLNSYRLDLNSLNNFLKDSISILKIDSDQLNLWFMEISSSS 66

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
             ++  + L ++R  + W ++Q  +  +PCL +   K      +  ++  +++  +    
Sbjct: 67  KATTINRKLATVRKFYAWCIKQNLILKDPCLGISTRKTPQRLPKSISESQVEELLNAPDL 126

Query: 189 ----GSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDG-- 240
               G + +   E L  +G+R S+        +     +  +   K      V + +   
Sbjct: 127 KTASGLRDKAMLEILYATGMRVSELIAIKTNEISLDAGVVRVTMGKGSKDRLVPMGEESE 186

Query: 241 --FMKLLAM------TPIGKETFFINNDKQKMNATQFSIWFKAKAT--KAGVNKSAHGVR 290
               K L+               F+N     M    F    K  A      +  S H +R
Sbjct: 187 FYLKKYLSEGRPLLEKDKKNSFVFLNRFGDCMTRQAFWQIIKKYAKYTSIKIPLSPHVLR 246

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
              AT   + GA    +    G   +   + YT  A R RL
Sbjct: 247 HAFATHLLNHGADLRVVQMLLGHVDISTTQIYTHVA-RERL 286


>gi|315163991|gb|EFU08008.1| tyrosine recombinase XerD [Enterococcus faecalis TX1302]
          Length = 296

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 47/274 (17%), Positives = 107/274 (39%), Gaps = 27/274 (9%)

Query: 85  GSLAVNSRISFESYFDQ---IIRKSG----DFDYRKITTKHIRSGVESRKHTPSSAIQFL 137
             L+ N+R S+E    +    +++ G    D   R + T+ ++S  E ++ + +S I+ +
Sbjct: 16  RGLSNNTRRSYERDLKKYVAFLQEQGLHSWDEVDRYMITEFLQSLHEEQQAS-ASVIRMI 74

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPR 193
           +S+R   ++  ++     NP   ++ PK+  +     + +++ +           G + R
Sbjct: 75  SSLRGFHQFLRQERLSEHNPMQHIDSPKKVQKLPSTLSVDEVTRLIETPDTSKPLGMRNR 134

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM----- 247
              E +  +GLR S+     +  L  +I  ++T  K      + L D  ++ +       
Sbjct: 135 AILEVMYATGLRVSELIEIKLGDLHLSIGLLQTIGKGDKERIIPLGDYAIQWIQRYMNEA 194

Query: 248 ------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
                     +   F+N+  + ++        K    +A + K  + H +R   AT   +
Sbjct: 195 RPQLIKNHPNETHLFVNHHGEPLSRQGIWKNLKQIVREAQIEKNITPHTLRHSFATHLLE 254

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
            GA    +    G   +   + YT    + R+  
Sbjct: 255 NGADLRIVQELLGHADISTTQIYTH-ITKQRMAD 287


>gi|120600077|ref|YP_964651.1| tyrosine recombinase XerD [Shewanella sp. W3-18-1]
 gi|146291994|ref|YP_001182418.1| tyrosine recombinase XerD [Shewanella putrefaciens CN-32]
 gi|120560170|gb|ABM26097.1| tyrosine recombinase XerD [Shewanella sp. W3-18-1]
 gi|145563684|gb|ABP74619.1| tyrosine recombinase XerD [Shewanella putrefaciens CN-32]
          Length = 300

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 51/288 (17%), Positives = 103/288 (35%), Gaps = 26/288 (9%)

Query: 74  LISEYRKSAHW--GSLAVNSRISFE---SYFDQIIRKSGDFDYRKITT--KHIRSGVESR 126
           LI  +     W    L+ N+  ++     +FD+  ++ G           +   +    +
Sbjct: 10  LIDAFLDDL-WSSKGLSDNTLSAYRTDLRHFDRHQQRHGTTLLEATAADVRSYLALRLEQ 68

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185
               +S+ + L+S+R  + + +  + +A++P   +E PK         ++  + +  S  
Sbjct: 69  HFARTSSARLLSSLRRFYTYLLLTKQIAVDPMALIESPKLTRHLPHSLSESQVDRLLSEP 128

Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGF 241
                   + +   E L  +GLR S+     ++ +      ++   K G    V L +  
Sbjct: 129 NVDDPVECRDKAMLELLYATGLRVSELVGLTMEQMSLRQGLVRIVGKGGKERLVPLGELA 188

Query: 242 MKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGV 289
           +  +                 +  F +N  Q M    F    K  A +AG+    S H +
Sbjct: 189 VTEVEAYLKFARQELLGHKQSDVVFPSNRGQMMTRQTFWHRIKLYALRAGIETALSPHTL 248

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
           R   AT   + GA    +    G   +   + YT  A R RL   + +
Sbjct: 249 RHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVA-RARLQELHQQ 295


>gi|315268949|gb|ADT95802.1| tyrosine recombinase XerD [Shewanella baltica OS678]
          Length = 300

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 50/277 (18%), Positives = 100/277 (36%), Gaps = 27/277 (9%)

Query: 85  GSLAVNSRISFE---SYFDQIIRKSGD--FDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
             L+ N+  ++     +FD+   + G       +   +   +    +    +S+ + L+S
Sbjct: 22  KGLSDNTLSAYRTDLRHFDRYQAQQGVTLLSVSQADVRAYLAFRVEQDFARTSSARLLSS 81

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195
           +R  + + V+ + ++ +P   VE PK         ++  + +  S      +   + +  
Sbjct: 82  LRRFYTYLVQTKQISADPMALVESPKLTRHLPDSLSESQVDRLLSEPNVEDAVECRDKAM 141

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPD------------GFM 242
            E L  +GLR S+     ++ +      ++   K G    V L +               
Sbjct: 142 LELLYATGLRVSELVGLTMEQMSLRQGLVRIVGKGGKERLVPLGELAITEVESYMKFARQ 201

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADA 300
           +LL       +  F +   Q M    F    K  A +AG+    S H +R   AT   + 
Sbjct: 202 ELLGNK--QSDVVFPSKRGQMMTRQTFWHRIKLYALRAGIETALSPHTLRHAFATHLLNH 259

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
           GA    +    G   +   + YT  A R RL   + +
Sbjct: 260 GADLRVVQLLLGHSDLSTTQIYTHVA-RARLQELHQQ 295


>gi|212695398|ref|ZP_03303526.1| hypothetical protein BACDOR_04947 [Bacteroides dorei DSM 17855]
 gi|212662033|gb|EEB22607.1| hypothetical protein BACDOR_04947 [Bacteroides dorei DSM 17855]
          Length = 308

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 52/276 (18%), Positives = 106/276 (38%), Gaps = 23/276 (8%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQII-----RKSGDFDYRKITTKHIRSGVES 125
             ++ +Y++      SL+ N+  ++ +  D+++           D R    +   +G+  
Sbjct: 8   DKILVKYKQYLKLEKSLSDNTVDAYLTDLDKLLAYLTLENINILDVRLENLEDFSAGLHD 67

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
               P S  + L+ +R  +++ + ++Y+  +P   +E P+   +     T E++      
Sbjct: 68  IGIHPRSQARILSGIRSFYRFLIMEDYLESDPTELLESPQTGFKLPEVMTVEEIDLLIGS 127

Query: 186 WSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-VELPDG 240
              G+    + R   E L   GLR S+ C   +  L      IK +  G+    V +   
Sbjct: 128 IDRGTKEGQRNRAILETLYSCGLRVSELCNLKLSELYFEEGFIKVEGKGSKQRLVPISPR 187

Query: 241 F----------MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288
                        L+ + P  ++  FI+N  + ++        K  A + G+ K  S H 
Sbjct: 188 AIKEIRLYFTDRNLMKIKPGFEDFVFISNFGKNISRIMVFHIIKELAERIGLKKKISPHT 247

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            R   AT   + GA    +    G +++   E YT 
Sbjct: 248 FRHSFATHLLEGGANLRAIQCMLGHESIGTTEIYTH 283


>gi|329956554|ref|ZP_08297151.1| tyrosine recombinase XerD [Bacteroides clarus YIT 12056]
 gi|328524451|gb|EGF51521.1| tyrosine recombinase XerD [Bacteroides clarus YIT 12056]
          Length = 316

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 53/274 (19%), Positives = 102/274 (37%), Gaps = 23/274 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQII-----RKSGDFDYRKITTKHIRSGVESRK 127
           +I +Y++      +L+ N+  ++ +   +++           D      +   +G+    
Sbjct: 16  IIRKYQQYIRLEKALSSNTFDAYMTDLQKLLHFLDGENIDIPDVTPDDLQRFAAGLHDIG 75

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
             P S  + L+ ++  F + V  +Y+  +P   +E PK   +     T E++ +  S   
Sbjct: 76  IHPRSQARILSGIKSFFHFLVIADYLEADPSELLEGPKIGFKIPEVLTIEEIDRIISTVD 135

Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-VELPDGFM 242
               EG + R   E L   GLR S+ C   +  L      IK +  G+    V +    +
Sbjct: 136 MEKKEGQRNRAILETLYSCGLRVSELCNLKISDLYFEEGFIKVEGKGSKQRLVPISPRAI 195

Query: 243 KLLAMTPIGK----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290
           K +      +          +  F+     +++        K  A KAG+ K  S H  R
Sbjct: 196 KEIKYWFADRNLGKIKKGYEDYVFLARWGNRISRIMVFHMIKELAEKAGITKNISPHTFR 255

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              AT   + GA    +    G +++   E YT 
Sbjct: 256 HSFATHLLEGGANLRAIQCMLGHESIATTEIYTH 289


>gi|198245719|ref|YP_002216060.1| integrase protein [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|197940235|gb|ACH77568.1| integrase protein [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
          Length = 329

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 63/325 (19%), Positives = 117/325 (36%), Gaps = 36/325 (11%)

Query: 24  YFRKGHGRRIRLPYPHES--TFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKS 81
           Y+ K  G    +     +      AY   + G           RK   T   L  ++  S
Sbjct: 23  YYWKPGGSTENIAPADATKAEVWVAYEKKVEG-----------RKNRITFIQLWRKFLAS 71

Query: 82  AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS-SAIQFLTSM 140
           A +  LA  ++  + ++   I+   GD + + I  +HIR  +++R       A    +SM
Sbjct: 72  ADYADLAPRTQKDYLAHEKYILAVFGDAEAKAIKPEHIRRYMDARGQKSRVQANHEHSSM 131

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP-RLAFEFL 199
             +F+W+ ++ YV  NPC+ V++   K +  R  T E+   +++ ++  +   R A E  
Sbjct: 132 SRVFRWSYQRGYVPGNPCVGVDKFP-KPQRDRYITDEE---YRAIYNNATPAVRAAMEIA 187

Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL--LAMTPIGKETFFI 257
                R SD  +     +      I+  KTG        D       +      +     
Sbjct: 188 YLCAARVSDVLKMNWNQILEKGIFIQQGKTGVKQIKSWTDRLRDAVEICREWGEEGPVIR 247

Query: 258 NNDKQKMNATQFSIWFKAKATKAG------VNKSAHGVRKFSATISADAGATAHELMATY 311
               ++ +   F+  ++     AG      ++ + H + K       +   TA +     
Sbjct: 248 TMYGERYSYKGFNEAWRKARKAAGDDLGRPLDCTFHDL-KAKGISDYE--GTAKDKQKYS 304

Query: 312 GWKTVDQAETYTKGA------DRIR 330
           G KT  Q   Y +        DR R
Sbjct: 305 GHKTESQVLVYDRKVKMSPTLDRKR 329


>gi|170698617|ref|ZP_02889685.1| tyrosine recombinase XerD [Burkholderia ambifaria IOP40-10]
 gi|170136470|gb|EDT04730.1| tyrosine recombinase XerD [Burkholderia ambifaria IOP40-10]
          Length = 320

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 49/268 (18%), Positives = 90/268 (33%), Gaps = 22/268 (8%)

Query: 85  GSLAVNSRISFES---YFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSSAIQFLTSM 140
             LA N+  ++      F Q +  + D          +   + +R     +S+ + L+  
Sbjct: 43  HGLARNTLDAYRRDLVLFSQWLAATHDAPLDSADEAMLIGYIAARSDGKATSSNRRLSVF 102

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAF 196
           R  + WAVR+   + +P L +   K+        ++  ++        G+    + R   
Sbjct: 103 RRYYGWAVREHRASADPTLRITSAKQAARFPSTLSEAQVEALLGAPDIGTPLGLRDRTML 162

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLLAM 247
           E +  SGLR S+        +  N   ++    G+   +          +          
Sbjct: 163 ELMYASGLRVSELVTLKTVEVGLNEGVVRVMGKGSKERLVPFGEVAHGWIERYLRDARPA 222

Query: 248 T--PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGAT 303
                  +  F+      M   QF    K  A +A V  + S H +R   AT   + GA 
Sbjct: 223 LLGARAADALFVTARGDGMTRQQFWNIIKRHAQQAAVRAHLSPHTLRHAFATHLLNHGAD 282

Query: 304 AHELMATYGWKTVDQAETYTKGADRIRL 331
              +    G   +   + YT  A R RL
Sbjct: 283 LRVVQLLLGHSDISTTQIYTHVA-RERL 309


>gi|145628659|ref|ZP_01784459.1| tyrosine recombinase [Haemophilus influenzae 22.1-21]
 gi|144979129|gb|EDJ88815.1| tyrosine recombinase [Haemophilus influenzae 22.1-21]
 gi|309972530|gb|ADO95731.1| Site-specific, tyrosine recombinase XerD [Haemophilus influenzae
           R2846]
          Length = 297

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 48/284 (16%), Positives = 98/284 (34%), Gaps = 27/284 (9%)

Query: 73  WLISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFDYR-----KITTKHIRSGVES 125
            LI  +     W    L+ N+  S+      +       D        +  +        
Sbjct: 5   ALIDLFLNEY-WIEKGLSENTVQSYRLDLTALCDWLDKNDLSLETLDAVDLQGFLGERLE 63

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS- 184
           + +  +S  + L++MR LF++  R++Y   +P   +  PK  +   +  T++ +    + 
Sbjct: 64  KGYKATSTARMLSAMRKLFQYLYREKYRVDDPSAVLSSPKLPSRLPKYLTEQQVSDLLNT 123

Query: 185 ---FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240
                    + +   E L  +GLR ++     ++++      ++   K      V + + 
Sbjct: 124 PDVEVPLELRDKAMLELLYATGLRVTELVSLTIENMSVQQGVVRVIGKGNKERIVPMGEE 183

Query: 241 FMKL-----LAMTPI-----GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAH 287
                    L   P+       +  F +   Q+M    F    K  A  A ++    S H
Sbjct: 184 AAYWVRQFMLYGRPVLLNGQSSDVVFPSQRTQQMTRQTFWHRVKHYAILADIDADALSPH 243

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            +R   AT   + GA    +    G   +   + YT  A + RL
Sbjct: 244 VLRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVA-KERL 286


>gi|329848435|ref|ZP_08263463.1| phage integrase [Asticcacaulis biprosthecum C19]
 gi|328843498|gb|EGF93067.1| phage integrase [Asticcacaulis biprosthecum C19]
          Length = 397

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 67/373 (17%), Positives = 124/373 (33%), Gaps = 35/373 (9%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
             V + +   G    YFRKG  R   L  P  +  +   + A+     +       + K 
Sbjct: 14  KHVQRVKRAKGNTDLYFRKGDYREGPLSSPDGTQALKDEVDAIL-KRLEATSRAVAKPKT 72

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128
            TL   +++Y +SA + +LA +++  ++ Y D++    GD     IT   I    ++   
Sbjct: 73  GTLAGALNDYNRSADFITLARSTQNGYQDYIDELTDDCGDVLLADITRSWIMELRDAWAV 132

Query: 129 TP-SSAIQFLTSMRVLFKWAVRQE---YVAINP---CLSVERPKRKTEGIRPWTKEDMQQ 181
               +A   L  ++      +  +    +  +P     +V RP    EG   W   +++ 
Sbjct: 133 RGYRAANMRLQLLKNALAPIIADDTDNRIKGDPFRSVENVRRPHDTPEGHPIWEDFEVEA 192

Query: 182 FKSFWSEGSQPRLAFEFLL--YSGLRCSDSCRAGV---------QHLQNNIFSIKTQKTG 230
             S       P LA    L  Y G R        +           L     +  T+K  
Sbjct: 193 AISAAITRKHPGLARAIALGRYGGFRKGTIITVPMRARVVGYNEDGLPERRINWITEKRK 252

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF--------KAKATKAGV 282
            +      +    +L  TP    T   N D     +      F        +A   +A +
Sbjct: 253 VLADRREDERLTAVLDATPNRAYTLAYNADGMAWTSRALGHAFDRLMNSLARAGKVRADM 312

Query: 283 N--------KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIK 334
           +         + HG++       A + A+   +MA     T   A  Y + A R  +   
Sbjct: 313 DQDGELFCPLTIHGLKHSRGVELAQSNASDAGIMAQLDHATTRAAAIYRRQAQRRVMSDH 372

Query: 335 NSRRISSVVDSDD 347
              ++ +V +   
Sbjct: 373 AQDQVDNVRELRK 385


>gi|320540116|ref|ZP_08039771.1| site-specific tyrosine recombinase [Serratia symbiotica str.
           Tucson]
 gi|320029782|gb|EFW11806.1| site-specific tyrosine recombinase [Serratia symbiotica str.
           Tucson]
          Length = 299

 Score =  144 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 43/265 (16%), Positives = 92/265 (34%), Gaps = 23/265 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGVESRKHTPSSAIQFLTS 139
            +LA N+ +S+      ++      +      + +  +   +      +  +S+ + L++
Sbjct: 20  RNLAENTLVSYRLDLQALVAWLNHQNITLLQAQALDLQAFLAERVDGGYKATSSARLLSA 79

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195
           MR LF++  R++  A +P   +  PK      +  ++  +               + +  
Sbjct: 80  MRRLFQYLYREKLRADDPTTRLASPKLPQRLPKDLSEAQIDALLKAPCVDQPIELRDKAM 139

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKET 254
            E L  +GLR S+     +  +      ++   K      V L +  +  +         
Sbjct: 140 LEVLYATGLRVSELVGLTISDVSLRQGVVRVIGKGNKERLVPLGEEAVYWIENYLEHGRP 199

Query: 255 FFINNDK----------QKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG 301
           + +N+            Q+M    F    K  A  AG++    S H +R   AT   + G
Sbjct: 200 WLVNSQALDVLFPSQRCQQMTRQTFWHRIKHYAILAGIDSERLSPHVLRHAFATHLLNHG 259

Query: 302 ATAHELMATYGWKTVDQAETYTKGA 326
           A    +    G   +   + YT  A
Sbjct: 260 ADLRVVQMLLGHSDLSTTQIYTHVA 284


>gi|329571728|gb|EGG53409.1| tyrosine recombinase XerD [Enterococcus faecalis TX1467]
          Length = 305

 Score =  144 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 48/289 (16%), Positives = 109/289 (37%), Gaps = 27/289 (9%)

Query: 85  GSLAVNSRISFESYFDQ---IIRKSG----DFDYRKITTKHIRSGVESRKHTPSSAIQFL 137
             L+ N+R S+E    +    +++ G    D   R + T+ ++S  E ++ + +S I+ +
Sbjct: 16  RGLSNNTRRSYERDLKKYVAFLQEQGLHSWDEVDRYMITEFLQSLHEEQQAS-ASVIRMI 74

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPR 193
           +S+R   ++  ++     NP   ++ PK+  +     + +++ +           G + R
Sbjct: 75  SSLRGFHQFLRQERLSEHNPMQHIDSPKKVQKLPSTLSVDEVTRLIETPDTSKPLGMRNR 134

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM----- 247
              E +  +GLR S+     +  L  +I  ++T  K      + L D  ++ +       
Sbjct: 135 AILEVMYATGLRVSELIEIKLGDLHLSIGLLQTIGKGDKERIIPLGDYAIQWIERYMNEA 194

Query: 248 ------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
                     +   F+N+  + ++        K    +A + K  + H +R   AT   +
Sbjct: 195 RPQLIKNHPNETHLFVNHHGEPLSRQGIWKNLKQIVREAQIEKNITPHTLRHSFATHLLE 254

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
            GA    +    G   +   + YT    + R+             +  P
Sbjct: 255 NGADLRIVQELLGHADISTTQIYTH-ITKQRMADVYKEHFPRASFARMP 302


>gi|312795208|ref|YP_004028130.1| integrase/recombinase (XerD/RipX family) [Burkholderia rhizoxinica
           HKI 454]
 gi|312166983|emb|CBW73986.1| Integrase/recombinase (XerD/RipX family) [Burkholderia rhizoxinica
           HKI 454]
          Length = 308

 Score =  144 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 48/273 (17%), Positives = 84/273 (30%), Gaps = 21/273 (7%)

Query: 85  GSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSGVESRKH-TPSSAIQFLTSM 140
             L+ N+  ++             + +          +   +  R     SSA + L+  
Sbjct: 31  HGLSRNTLDAYRRDLSLYCDWLAATHERTLDATRESDLNGYLAVRSDGKASSANRRLSVF 90

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAF 196
           R  F WA+R+  VA +P L +   ++         +  ++            G + R   
Sbjct: 91  RRYFAWALREHRVAADPTLRIRSARQPPRFPSSLNEAQVEALLGAPDLDTPLGLRDRAML 150

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFMKLLAM-------- 247
           E +  SGLR S+        +  N   ++    G     V   D     L          
Sbjct: 151 ELMYASGLRVSELVTLKTVEVGLNEGVVRVMGKGAKERLVPFGDEARGWLERYLRDARAV 210

Query: 248 --TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGAT 303
                G +  F+      M   QF    K  A +A ++   S H +R   AT   + GA 
Sbjct: 211 LLGARGADALFVTARGGAMTRQQFWNIIKRYALRADIHVPLSPHTLRHAFATHLLNHGAD 270

Query: 304 AHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
              +    G   +   + YT  A      +   
Sbjct: 271 LRVVQMLLGHSDISTTQIYTHVARERLKALHAI 303


>gi|172061520|ref|YP_001809172.1| site-specific tyrosine recombinase XerD [Burkholderia ambifaria
           MC40-6]
 gi|171994037|gb|ACB64956.1| tyrosine recombinase XerD [Burkholderia ambifaria MC40-6]
          Length = 322

 Score =  144 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 49/268 (18%), Positives = 88/268 (32%), Gaps = 22/268 (8%)

Query: 85  GSLAVNSRISFES---YFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSSAIQFLTSM 140
             LA N+  ++      F Q +    D          +   + +R     +S+ + L+  
Sbjct: 45  HGLARNTLDAYRRDLVLFSQWLAAMHDAPLDSADEAMLIGYIAARSDGKATSSNRRLSVF 104

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAF 196
           R  + WAVR+     +P L +   K+        ++  ++        G+    + R   
Sbjct: 105 RRYYGWAVREHRANADPTLRITSAKQAARFPSTLSEAQVEALLGAPDVGTPLGLRDRTML 164

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLLAM 247
           E +  SGLR S+        +  N   ++    G+   +          +          
Sbjct: 165 ELMYASGLRVSELVTLKTVEVGLNEGVVRVMGKGSKERLVPFGEVAHGWIERYLRDARPA 224

Query: 248 T--PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGAT 303
                  +  F+      M   QF    K  A +A V  + S H +R   AT   + GA 
Sbjct: 225 LLGARAADALFVTARGDGMTRQQFWNIIKRHAQQADVRAHLSPHTLRHAFATHLLNHGAD 284

Query: 304 AHELMATYGWKTVDQAETYTKGADRIRL 331
              +    G   +   + YT  A R RL
Sbjct: 285 LRVVQLLLGHSDISTTQIYTHVA-RERL 311


>gi|238787321|ref|ZP_04631120.1| Tyrosine recombinase xerD [Yersinia frederiksenii ATCC 33641]
 gi|238724583|gb|EEQ16224.1| Tyrosine recombinase xerD [Yersinia frederiksenii ATCC 33641]
          Length = 299

 Score =  144 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 95/278 (34%), Gaps = 26/278 (9%)

Query: 74  LISEYRKSAHW--GSLAVNSRISFESYFDQII---RKSGDFDYRK--ITTKHIRSGVESR 126
           LI ++   A W   +LA N+  S+      +       G    R      +   +     
Sbjct: 8   LIEQFL-DALWLERNLAENTLASYRLDLHALSGWLEHHGSDLLRAGSQDLQSFLAERIEG 66

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185
            +  +S+ + L++MR LF++  R++    +P   +  PK      +  ++  +    +  
Sbjct: 67  GYKATSSARLLSAMRRLFQYLYREKLREDDPTALLSSPKLPQRLPKDLSEAQVDALLNSP 126

Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241
                   + +   E L  +GLR S+     +  +      ++   K      V L +  
Sbjct: 127 NVDIPLELRDKAMLEVLYATGLRVSELVGLTISDVSLRQGVVRVIGKGNKERLVPLGEEA 186

Query: 242 MKLLAMTPIGKETFFIN----------NDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288
           +  +         + IN          N  Q+M    F    K  A  AG++    S H 
Sbjct: 187 VYWIENYMEHGRPWLINGQSLDVLFPSNRSQQMTRQTFWHRIKHYAILAGIDSERLSPHV 246

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           +R   AT   + GA    +    G   +   + YT  A
Sbjct: 247 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA 284


>gi|169831443|ref|YP_001717425.1| tyrosine recombinase XerD [Candidatus Desulforudis audaxviator
           MP104C]
 gi|169638287|gb|ACA59793.1| tyrosine recombinase XerD [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 295

 Score =  144 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 51/272 (18%), Positives = 96/272 (35%), Gaps = 23/272 (8%)

Query: 85  GSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFLT 138
             L+ N+  ++          +   G  D   +   HI + + ++K     P++  + L+
Sbjct: 16  RGLSENTLAAYRGDLQQFGAFLAAQGVRDLNDLQASHITAYLLAQKRLGRRPATVARRLS 75

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRL 194
           ++R   K+   +  V  NP      PK+     R    +++ +  +        G + R 
Sbjct: 76  AVRAFLKFLTAEGLVTANPAEYTGSPKQAQRLPRVLRVDEVDRLLTAPDTANPMGLRDRA 135

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVEL--------PDGFMKLL 245
             E L  SGLR S++    V  L      ++   K G    V +         +   +  
Sbjct: 136 LMEVLYASGLRVSEAVNLKVGDLDLRGGLVRCVGKGGRERVVPVGGEAVRLVDEYLARSR 195

Query: 246 AMTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301
            +   G+ T   F+N   Q +         K  A +AG+ K  + H +R   AT   + G
Sbjct: 196 PLLLKGRRTRFLFVNRRGQPLTRQTVWKLLKRYAREAGIQKEITPHTLRHSFATHLLENG 255

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           A    +    G   +   + YT    R    +
Sbjct: 256 ADLRAVQEMLGHADIVTTQIYTHLTSRGLRAV 287


>gi|126665073|ref|ZP_01736056.1| site-specific tyrosine recombinase XerD [Marinobacter sp. ELB17]
 gi|126630443|gb|EBA01058.1| site-specific tyrosine recombinase XerD [Marinobacter sp. ELB17]
          Length = 314

 Score =  144 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 48/276 (17%), Positives = 93/276 (33%), Gaps = 25/276 (9%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-------KHTPSSAIQFLT 138
            L+  +R ++ S    + +         +     RS + +            S+A + L+
Sbjct: 35  GLSEKTREAYRSDLGGLAQWLQGQPGTPLLIATQRSDLLTWLSGGLAGGVKASTAARRLS 94

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRL 194
            +R  +++ +R+  +  +P L +E PK         T+ ++    +          + + 
Sbjct: 95  GIRRFYRYLLREGLIPEDPTLRIESPKLTRPLPDTLTEAEVNALLTEPDPEVPIELRDKA 154

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAMTPIGKE 253
             E L   GLR ++     +  +      ++ T K      V L +  +  L        
Sbjct: 155 MLEILYGCGLRVTELTSLRLDQVNLRQGVVRITGKGDKDRLVPLGEEAIDWLQRYIKEAR 214

Query: 254 T----------FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301
                       F  N  + M    F    K  A + G+ K  S H +R   AT   + G
Sbjct: 215 PELLKGHACDDLFPGNRPKAMTRQTFWHRIKHYAARTGIQKHLSPHTLRHAFATHLLNHG 274

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
           A    +    G   +   + YT  A R RL   + +
Sbjct: 275 ADLRVVQMLLGHADLSTTQIYTHVA-RQRLQELHRQ 309


>gi|29376101|ref|NP_815255.1| integrase/recombinase XerD, putative [Enterococcus faecalis V583]
 gi|227518728|ref|ZP_03948777.1| site-specific DNA tyrosine recombinase, XerD [Enterococcus faecalis
           TX0104]
 gi|227553337|ref|ZP_03983386.1| site-specific DNA tyrosine recombinase, XerD [Enterococcus faecalis
           HH22]
 gi|255975876|ref|ZP_05426462.1| phage integrase [Enterococcus faecalis T2]
 gi|256619040|ref|ZP_05475886.1| integrase [Enterococcus faecalis ATCC 4200]
 gi|256762466|ref|ZP_05503046.1| phage integrase [Enterococcus faecalis T3]
 gi|256958957|ref|ZP_05563128.1| integrase [Enterococcus faecalis DS5]
 gi|256961950|ref|ZP_05566121.1| phage integrase [Enterococcus faecalis Merz96]
 gi|256965148|ref|ZP_05569319.1| phage integrase [Enterococcus faecalis HIP11704]
 gi|257078988|ref|ZP_05573349.1| phage integrase [Enterococcus faecalis JH1]
 gi|257082573|ref|ZP_05576934.1| phage integrase [Enterococcus faecalis E1Sol]
 gi|257085206|ref|ZP_05579567.1| phage integrase [Enterococcus faecalis Fly1]
 gi|257086767|ref|ZP_05581128.1| phage integrase [Enterococcus faecalis D6]
 gi|257416070|ref|ZP_05593064.1| integrase [Enterococcus faecalis AR01/DG]
 gi|257419273|ref|ZP_05596267.1| phage integrase [Enterococcus faecalis T11]
 gi|293383018|ref|ZP_06628936.1| tyrosine recombinase XerD [Enterococcus faecalis R712]
 gi|293389493|ref|ZP_06633950.1| tyrosine recombinase XerD [Enterococcus faecalis S613]
 gi|294781340|ref|ZP_06746683.1| tyrosine recombinase XerD [Enterococcus faecalis PC1.1]
 gi|300860304|ref|ZP_07106391.1| tyrosine recombinase XerD [Enterococcus faecalis TUSoD Ef11]
 gi|307271041|ref|ZP_07552324.1| tyrosine recombinase XerD [Enterococcus faecalis TX4248]
 gi|307273248|ref|ZP_07554494.1| tyrosine recombinase XerD [Enterococcus faecalis TX0855]
 gi|307274985|ref|ZP_07556148.1| tyrosine recombinase XerD [Enterococcus faecalis TX2134]
 gi|307278097|ref|ZP_07559181.1| tyrosine recombinase XerD [Enterococcus faecalis TX0860]
 gi|312907511|ref|ZP_07766502.1| tyrosine recombinase XerD [Enterococcus faecalis DAPTO 512]
 gi|312910129|ref|ZP_07768976.1| tyrosine recombinase XerD [Enterococcus faecalis DAPTO 516]
 gi|29343563|gb|AAO81325.1| integrase/recombinase XerD, putative [Enterococcus faecalis V583]
 gi|227073809|gb|EEI11772.1| site-specific DNA tyrosine recombinase, XerD [Enterococcus faecalis
           TX0104]
 gi|227177524|gb|EEI58496.1| site-specific DNA tyrosine recombinase, XerD [Enterococcus faecalis
           HH22]
 gi|255968748|gb|EET99370.1| phage integrase [Enterococcus faecalis T2]
 gi|256598567|gb|EEU17743.1| integrase [Enterococcus faecalis ATCC 4200]
 gi|256683717|gb|EEU23412.1| phage integrase [Enterococcus faecalis T3]
 gi|256949453|gb|EEU66085.1| integrase [Enterococcus faecalis DS5]
 gi|256952446|gb|EEU69078.1| phage integrase [Enterococcus faecalis Merz96]
 gi|256955644|gb|EEU72276.1| phage integrase [Enterococcus faecalis HIP11704]
 gi|256987018|gb|EEU74320.1| phage integrase [Enterococcus faecalis JH1]
 gi|256990603|gb|EEU77905.1| phage integrase [Enterococcus faecalis E1Sol]
 gi|256993236|gb|EEU80538.1| phage integrase [Enterococcus faecalis Fly1]
 gi|256994797|gb|EEU82099.1| phage integrase [Enterococcus faecalis D6]
 gi|257157898|gb|EEU87858.1| integrase [Enterococcus faecalis ARO1/DG]
 gi|257161101|gb|EEU91061.1| phage integrase [Enterococcus faecalis T11]
 gi|291079683|gb|EFE17047.1| tyrosine recombinase XerD [Enterococcus faecalis R712]
 gi|291081110|gb|EFE18073.1| tyrosine recombinase XerD [Enterococcus faecalis S613]
 gi|294451570|gb|EFG20029.1| tyrosine recombinase XerD [Enterococcus faecalis PC1.1]
 gi|300849343|gb|EFK77093.1| tyrosine recombinase XerD [Enterococcus faecalis TUSoD Ef11]
 gi|306505494|gb|EFM74680.1| tyrosine recombinase XerD [Enterococcus faecalis TX0860]
 gi|306508433|gb|EFM77540.1| tyrosine recombinase XerD [Enterococcus faecalis TX2134]
 gi|306510233|gb|EFM79257.1| tyrosine recombinase XerD [Enterococcus faecalis TX0855]
 gi|306512539|gb|EFM81188.1| tyrosine recombinase XerD [Enterococcus faecalis TX4248]
 gi|310626539|gb|EFQ09822.1| tyrosine recombinase XerD [Enterococcus faecalis DAPTO 512]
 gi|311289402|gb|EFQ67958.1| tyrosine recombinase XerD [Enterococcus faecalis DAPTO 516]
 gi|315027289|gb|EFT39221.1| tyrosine recombinase XerD [Enterococcus faecalis TX2137]
 gi|315033946|gb|EFT45878.1| tyrosine recombinase XerD [Enterococcus faecalis TX0017]
 gi|315036955|gb|EFT48887.1| tyrosine recombinase XerD [Enterococcus faecalis TX0027]
 gi|315144440|gb|EFT88456.1| tyrosine recombinase XerD [Enterococcus faecalis TX2141]
 gi|315147241|gb|EFT91257.1| tyrosine recombinase XerD [Enterococcus faecalis TX4244]
 gi|315150560|gb|EFT94576.1| tyrosine recombinase XerD [Enterococcus faecalis TX0012]
 gi|315160468|gb|EFU04485.1| tyrosine recombinase XerD [Enterococcus faecalis TX0645]
 gi|315169058|gb|EFU13075.1| tyrosine recombinase XerD [Enterococcus faecalis TX1341]
 gi|315172335|gb|EFU16352.1| tyrosine recombinase XerD [Enterococcus faecalis TX1346]
 gi|315575890|gb|EFU88081.1| tyrosine recombinase XerD [Enterococcus faecalis TX0309B]
 gi|315580542|gb|EFU92733.1| tyrosine recombinase XerD [Enterococcus faecalis TX0309A]
 gi|323480700|gb|ADX80139.1| tyrosine recombinase XerD [Enterococcus faecalis 62]
          Length = 296

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 47/274 (17%), Positives = 107/274 (39%), Gaps = 27/274 (9%)

Query: 85  GSLAVNSRISFESYFDQ---IIRKSG----DFDYRKITTKHIRSGVESRKHTPSSAIQFL 137
             L+ N+R S+E    +    +++ G    D   R + T+ ++S  E ++ + +S I+ +
Sbjct: 16  RGLSNNTRRSYERDLKKYVAFLQEQGLHSWDEVDRYMITEFLQSLHEEQQAS-ASVIRMI 74

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPR 193
           +S+R   ++  ++     NP   ++ PK+  +     + +++ +           G + R
Sbjct: 75  SSLRGFHQFLRQERLSEHNPMQHIDSPKKVQKLPSTLSVDEVTRLIETPDTSKPLGMRNR 134

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM----- 247
              E +  +GLR S+     +  L  +I  ++T  K      + L D  ++ +       
Sbjct: 135 AILEVMYATGLRVSELIEIKLGDLHLSIGLLQTIGKGDKERIIPLGDYAIQWIERYMNEA 194

Query: 248 ------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
                     +   F+N+  + ++        K    +A + K  + H +R   AT   +
Sbjct: 195 RPQLIKNHPNETHLFVNHHGEPLSRQGIWKNLKQIVREAQIEKNITPHTLRHSFATHLLE 254

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
            GA    +    G   +   + YT    + R+  
Sbjct: 255 NGADLRIVQELLGHADISTTQIYTH-ITKQRMAD 287


>gi|256829239|ref|YP_003157967.1| tyrosine recombinase XerD [Desulfomicrobium baculatum DSM 4028]
 gi|256578415|gb|ACU89551.1| tyrosine recombinase XerD [Desulfomicrobium baculatum DSM 4028]
          Length = 292

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 48/280 (17%), Positives = 94/280 (33%), Gaps = 21/280 (7%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYF----DQIIRKSGDFDYRKITTKHIRSGVESRKH- 128
           I  Y +       LA  +  ++ S      D +    G        T  +      RK  
Sbjct: 5   IDAYLQHLTVIRGLAEKTVEAYGSDLLFFRDFLSELGGSLHQIDEHTLFLYMVHLRRKGL 64

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF--- 185
             +S  + ++S+R  F++ V++ ++A +P   ++ PK   +     +++++         
Sbjct: 65  KNTSMARNISSLRGFFEFLVQERHLASSPAALLDSPKLVRKLPEVLSRDEVTALLDRPAL 124

Query: 186 -WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG--- 240
               G + R   E L   GLR S+               ++   K      V L D    
Sbjct: 125 NTPLGFRDRTMLELLYACGLRVSELVSLTAPDFDPQAGLLRVLGKGSKERYVPLHDSAVS 184

Query: 241 -----FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFS 293
                  +   +     +T F+N     ++        +  A +AG+ +  S H +R   
Sbjct: 185 FMLSFLRQWRPLFGPKTDTVFLNRSGLGLSRQGVWKLLRRYALEAGITRPVSPHTLRHSF 244

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           AT   + GA    +    G   +   E YT       + +
Sbjct: 245 ATHLLEGGADLRTVQILLGHSDIMATEIYTHVQSARMVAL 284


>gi|262373947|ref|ZP_06067224.1| tyrosine recombinase XerD [Acinetobacter junii SH205]
 gi|262310958|gb|EEY92045.1| tyrosine recombinase XerD [Acinetobacter junii SH205]
          Length = 306

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 52/300 (17%), Positives = 107/300 (35%), Gaps = 21/300 (7%)

Query: 57  KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF---DYRK 113
           K+  I +  K P  L +L   +R      +++ ++R ++ S   Q           ++  
Sbjct: 4   KKPRIPAAVKIPEHLSFL-HGFRDYLVAQTVSPHTRNAYLSDLIQCSDLHDTVVLTEWSS 62

Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
                +   +     +P S  + L+++R  FK+   Q+    NP  + + PK      + 
Sbjct: 63  DDIADVLIVLTKHGKSPRSIARCLSALRQFFKFLREQKLRDDNPVATHQSPKIGRALPKD 122

Query: 174 WTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQK 228
            ++ D++   +        G + R   E L   GLR ++     ++ +      ++ T K
Sbjct: 123 LSEHDVEALINAPDISTALGLRDRAMLEVLYACGLRVTELLNLRLELINLKQGFLRITGK 182

Query: 229 TGTIITVELPDGFMKLL---------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATK 279
                 V L     + +          +     +  F+      M+   F    K  A +
Sbjct: 183 GNKERLVPLGQYACEWVEKYLSESRPQLYKSNTDYLFLTQHGGIMSRQNFWYAIKRYALQ 242

Query: 280 AGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
           A +    S H +R   AT   + GA    +    G   +   + YT  A + R+   +S+
Sbjct: 243 ANISAELSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-QHRMQELHSK 301


>gi|238796542|ref|ZP_04640049.1| Tyrosine recombinase xerD [Yersinia mollaretii ATCC 43969]
 gi|238719520|gb|EEQ11329.1| Tyrosine recombinase xerD [Yersinia mollaretii ATCC 43969]
          Length = 299

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 97/278 (34%), Gaps = 26/278 (9%)

Query: 74  LISEYRKSAHW--GSLAVNSRISFESYFDQI---IRKSGDFDYRK--ITTKHIRSGVESR 126
           LI ++   A W   +LA N+  S+      +   +   G    R      +   +     
Sbjct: 8   LIEQFL-DALWLERNLAENTLASYRLDLHALTGWLDHHGSDLLRAGSQELQSFLAERIEG 66

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185
            +  +S+ + L++MR LF++  R++    +P  ++  PK      +  ++  +    +  
Sbjct: 67  GYKATSSARLLSAMRRLFQYLYREKLRDDDPTAALSSPKLPQRLPKDLSEAQVDALLNAP 126

Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241
                   + +   E L  +GLR S+     +  +      ++   K      V L +  
Sbjct: 127 NVDIPLELRDKAMLEVLYATGLRVSELVGLTISDVSLRQGVVRVIGKGNKERLVPLGEEA 186

Query: 242 MKLLAMTPIGKETFFIN----------NDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288
           +  +         + IN          N  Q+M    F    K  A  AG++    S H 
Sbjct: 187 VYWIENYMEHGRPWLINGQALDVLFPSNRSQQMTRQTFWHRIKHYAILAGIDSERLSPHV 246

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           +R   AT   + GA    +    G   +   + YT  A
Sbjct: 247 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA 284


>gi|260771236|ref|ZP_05880163.1| tyrosine recombinase XerD [Vibrio furnissii CIP 102972]
 gi|260613833|gb|EEX39025.1| tyrosine recombinase XerD [Vibrio furnissii CIP 102972]
 gi|315179158|gb|ADT86072.1| site-specific tyrosine recombinase XerD [Vibrio furnissii NCTC
           11218]
          Length = 302

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 47/280 (16%), Positives = 107/280 (38%), Gaps = 26/280 (9%)

Query: 72  KWLISEYRKSAHW--GSLAVNSRISFE----SYFDQIIRKSGDFDYRKIT-TKHIRSGVE 124
           + L+ ++   A W    L+ N+ +S+        D + R +   D+  ++  +  ++ + 
Sbjct: 9   QGLVEQFL-DAMWMERGLSENTLMSYRNDLMKLLDWMQRHNYRLDFISLSGLQEYQTWLV 67

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
            + +  +S  + L+++R LF++  R++  A +P   +  PK      +  ++  +    S
Sbjct: 68  DQDYKQTSRARMLSAIRRLFQYLHREKMRADDPSALLISPKLPKRLPKDLSEAQVDALLS 127

Query: 185 F----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPD 239
                     + +   E L  +GLR ++     ++++      ++   K G    V + +
Sbjct: 128 APNPDDPIELRDKAMLELLYATGLRVTELVSLTMENISLRQGVVRVIGKGGKERLVPMGE 187

Query: 240 GFMKLLAMTPIGK----------ETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSA 286
             ++ +                 +  F +   Q+M    F    K  A  AG++    S 
Sbjct: 188 NAIEWIETFLAQGRSHLLGEQTSDVVFPSKRAQQMTRQTFWHRIKHYAVIAGIDVDKLSP 247

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           H +R   AT   + GA    +    G   +   + YT  A
Sbjct: 248 HVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVA 287


>gi|196034794|ref|ZP_03102201.1| integrase/recombinase XerD [Bacillus cereus W]
 gi|195992333|gb|EDX56294.1| integrase/recombinase XerD [Bacillus cereus W]
          Length = 296

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 45/271 (16%), Positives = 104/271 (38%), Gaps = 25/271 (9%)

Query: 85  GSLAVNSRISFES----YFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI---QFL 137
             LA N+ +S+E     Y   + +      + ++T  HI + ++  K    S+    + +
Sbjct: 16  KGLAKNTVVSYERDLKSYVKYLQKVEQAKSFHEVTRLHIVNFLQHLKENGKSSKTLARHI 75

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPR 193
            S+R   ++ +R+  V  +P + +E P+ + +  +  + ++++            G + +
Sbjct: 76  ASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLSVDEVEALLQTPKMTSVFGVRDK 135

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAMTPIGK 252
              E L  +GLR S+     ++ +   +  ++   K      + L     + +       
Sbjct: 136 AMLELLYATGLRVSELIALNLEDVHLTMGFVRCVGKGNKERIIPLGSLATEAIQKYIEKG 195

Query: 253 ----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
                     +  F+N+   +++   F    K  A +A + K  + H +R   AT   + 
Sbjct: 196 RRELMGKKVVDALFLNHHGNRLSRQGFWKILKRLAKEANIEKELTPHTLRHSFATHLLEN 255

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRL 331
           GA    +    G   +   + YT    + RL
Sbjct: 256 GADLRAVQEMLGHADISTTQIYTH-VSKTRL 285


>gi|255011423|ref|ZP_05283549.1| putative tyrosine recombinase [Bacteroides fragilis 3_1_12]
 gi|313149239|ref|ZP_07811432.1| integrase [Bacteroides fragilis 3_1_12]
 gi|313138006|gb|EFR55366.1| integrase [Bacteroides fragilis 3_1_12]
          Length = 319

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 50/274 (18%), Positives = 100/274 (36%), Gaps = 23/274 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVESRK 127
           +I +Y++      SL+ N+  ++ +  D+++    D     +       +   +G+    
Sbjct: 16  IIKKYQQYLKLEKSLSKNTLDAYLTDLDKLLNFLSDEGVDILEISLKDLQRFAAGLHDIG 75

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
               S  + ++ ++  F + +  +Y+  +P   +E PK   +     T E++    S   
Sbjct: 76  IHARSQARIISGIKSFFHFLIMADYIEADPSELLEGPKIGFKLPEVLTVEEIDHIISTVD 135

Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-VELPDGF- 241
               EG + R   E L   GLR S+     +  L  N   IK +  G+    V +     
Sbjct: 136 LSKNEGQRNRAILETLYSCGLRVSELTNLKLSDLYFNEGFIKVEGKGSKQRLVPISPRAI 195

Query: 242 ---------MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290
                       + +    ++  F++     ++        K  A  AG+ K  S H  R
Sbjct: 196 QEIKYYFMDRNRINIKKDYEDYLFLSRRGTHLSRIMIFHLIKELADMAGITKNISPHTFR 255

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              AT   + GA    +    G +++   E YT 
Sbjct: 256 HSFATHLLEGGANLRAIQCMLGHESISTTEIYTH 289


>gi|293394605|ref|ZP_06638899.1| tyrosine recombinase XerD [Serratia odorifera DSM 4582]
 gi|291422914|gb|EFE96149.1| tyrosine recombinase XerD [Serratia odorifera DSM 4582]
          Length = 299

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 50/279 (17%), Positives = 101/279 (36%), Gaps = 26/279 (9%)

Query: 73  WLISEYRKSAHW--GSLAVNSRISFE----SYFDQIIRKSGDF-DYRKITTKHIRSGVES 125
            LI ++   A W   +LA N+  S+     +  + + + + D      +  +   +    
Sbjct: 7   ALIEQFL-DALWLERNLAENTLASYRLDLQALVNWLAQHNSDLLQAEALDLQAFLAERVE 65

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
             +  SS+ + L++MR LF++  R++  A +P   +  PK      +  ++  +      
Sbjct: 66  GGYKASSSARLLSAMRRLFQYLYREKMRADDPTALLASPKLPQRLPKDLSEAQIDALLQA 125

Query: 186 ----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240
                    + +   E L  +GLR S+     +  +      ++   K      V L + 
Sbjct: 126 PCVDQPLELRDKAMLEVLYATGLRVSELVGLSISDVSLRQGVVRVIGKGNKERLVPLGEE 185

Query: 241 -------FMKLLAMTPIGKETF---FINNDKQKMNATQFSIWFKAKATKAGVN---KSAH 287
                  +++      +  +T    F +   Q+M    F    K  A  AG++    S H
Sbjct: 186 AVYWIENYLEHGRPWLVNGQTIDVLFPSQRCQQMTRQTFWHRIKHYAILAGIDSERLSPH 245

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            +R   AT   + GA    +    G   +   + YT  A
Sbjct: 246 VLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA 284


>gi|304410563|ref|ZP_07392181.1| tyrosine recombinase XerD [Shewanella baltica OS183]
 gi|307304656|ref|ZP_07584406.1| tyrosine recombinase XerD [Shewanella baltica BA175]
 gi|304351047|gb|EFM15447.1| tyrosine recombinase XerD [Shewanella baltica OS183]
 gi|306912058|gb|EFN42482.1| tyrosine recombinase XerD [Shewanella baltica BA175]
          Length = 300

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 51/275 (18%), Positives = 102/275 (37%), Gaps = 23/275 (8%)

Query: 85  GSLAVNSRISFE---SYFDQIIRKSGD--FDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
             L+ N+  ++     +FD+   + G       +   +   +    +    +S+ + L+S
Sbjct: 22  KGLSDNTLSAYRTDLRHFDRYQAQQGVTLLAVSQADVRAYLAFRVEQDFARTSSARLLSS 81

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195
           +R  + + V+ + ++ +P   VE PK         ++  + +  S      +   + +  
Sbjct: 82  LRRFYTYLVQTKQISADPMALVESPKLTRHLPDSLSESQVDRLLSEPNVEDAVECRDKAM 141

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPD-------GFMKLLAM 247
            E L  +GLR S+     ++ +      ++   K G    V L +        +MK    
Sbjct: 142 LELLYATGLRVSELVGLTMEQMSLRQGLVRIVGKGGKERLVPLGELAITEVESYMKFARQ 201

Query: 248 TPIGK---ETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGA 302
             +G    +  F +   Q M    F    K  A +AG+    S H +R   AT   + GA
Sbjct: 202 ELLGNKQSDVVFPSKRGQMMTRQTFWHRIKLYALRAGIETALSPHTLRHAFATHLLNHGA 261

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
               +    G   +   + YT  A R RL   + +
Sbjct: 262 DLRVVQLLLGHSDLSTTQIYTHVA-RARLQELHQQ 295


>gi|229545847|ref|ZP_04434572.1| site-specific DNA tyrosine recombinase, XerD [Enterococcus faecalis
           TX1322]
 gi|256853102|ref|ZP_05558472.1| phage integrase [Enterococcus faecalis T8]
 gi|307292019|ref|ZP_07571888.1| tyrosine recombinase XerD [Enterococcus faecalis TX0411]
 gi|229309046|gb|EEN75033.1| site-specific DNA tyrosine recombinase, XerD [Enterococcus faecalis
           TX1322]
 gi|256711561|gb|EEU26599.1| phage integrase [Enterococcus faecalis T8]
 gi|306497017|gb|EFM66565.1| tyrosine recombinase XerD [Enterococcus faecalis TX0411]
 gi|315029408|gb|EFT41340.1| tyrosine recombinase XerD [Enterococcus faecalis TX4000]
          Length = 296

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 47/274 (17%), Positives = 107/274 (39%), Gaps = 27/274 (9%)

Query: 85  GSLAVNSRISFESYFDQ---IIRKSG----DFDYRKITTKHIRSGVESRKHTPSSAIQFL 137
             L+ N+R S+E    +    +++ G    D   R + T+ ++S  E ++ + +S I+ +
Sbjct: 16  RGLSNNTRRSYERDLKKYVAFLQEQGLHSWDEVDRYMITEFLQSLHEEQQAS-ASVIRMI 74

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPR 193
           +S+R   ++  ++     NP   ++ PK+  +     + +++ +           G + R
Sbjct: 75  SSLRGFHQFLRQERLSEHNPMQHIDSPKKIQKLPSTLSVDEVTRLIETPDTSKPLGMRNR 134

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM----- 247
              E +  +GLR S+     +  L  +I  ++T  K      + L D  ++ +       
Sbjct: 135 AILEVMYATGLRVSELIEIKLGDLHLSIGLLQTIGKGDKERIIPLGDYAIQWIERYMNEA 194

Query: 248 ------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
                     +   F+N+  + ++        K    +A + K  + H +R   AT   +
Sbjct: 195 RPQLIKNHPNETHLFVNHHGEPLSRQGIWKNLKQIVREAQIEKNITPHTLRHSFATHLLE 254

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
            GA    +    G   +   + YT    + R+  
Sbjct: 255 NGADLRIVQELLGHADISTTQIYTH-ITKQRMAD 287


>gi|258515282|ref|YP_003191504.1| tyrosine recombinase XerD [Desulfotomaculum acetoxidans DSM 771]
 gi|257778987|gb|ACV62881.1| tyrosine recombinase XerD [Desulfotomaculum acetoxidans DSM 771]
          Length = 296

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 40/264 (15%), Positives = 94/264 (35%), Gaps = 24/264 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH------IRSGVESRKHTPSSAIQFLT 138
             LA N+  ++       +    D   +  +             ++ +  +P++  + L 
Sbjct: 16  RGLAENTLSAYRMDLQNFLSFCQDKQIKSWSDAGKNTILMYMMFLKQQAMSPATISRRLA 75

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ----QFKSFWSEGSQPRL 194
           +++  F++   ++ V  +P  S+E PK   +     +  +++    Q K     G + + 
Sbjct: 76  ALKSFFRFLTSEQVVEFSPTESMESPKLSQKLPNVLSTSEVELLLMQPKISQPAGIRDKA 135

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLL 245
             E L  +G+R S+     ++ +      I+    G+   +          + +   K  
Sbjct: 136 MLELLYATGIRVSELVDLNLEDVSIAEQFIRCYGKGSKERIVPLGSLSASFVEEYLQKGR 195

Query: 246 AMTPIGKET---FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
                  +T    F+N+  Q++    F    K    +  ++K  + H +R   AT   + 
Sbjct: 196 VKLIKKAQTTNALFLNHHGQRLTRQGFWKIIKKYGRQGKIDKPITPHTLRHSFATHLLEN 255

Query: 301 GATAHELMATYGWKTVDQAETYTK 324
           GA    +    G   +   + YT 
Sbjct: 256 GADLRSVQEMLGHADISTTQIYTH 279


>gi|163754938|ref|ZP_02162059.1| site-specific recombinase [Kordia algicida OT-1]
 gi|161325005|gb|EDP96333.1| site-specific recombinase [Kordia algicida OT-1]
          Length = 298

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 48/278 (17%), Positives = 96/278 (34%), Gaps = 27/278 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRK----ITTKHIRSGVESRKH--TPSSAIQFLT 138
             L+ N+ +++    +++IR   +         I    ++  +          S  + ++
Sbjct: 18  RGLSENTIVNYSHDIEKLIRFVENNAINHSPLSIDEATVQQFIYEIAKVLNARSQTRIIS 77

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRL 194
            ++  F + V ++Y   NP   +E PK   +       +D+++  +       EG + + 
Sbjct: 78  GLKSFFNYLVFEDYRKDNPTELIEAPKIGRKLPDTLALKDIEKLIAAIDLSKNEGHRNKA 137

Query: 195 AFEFLLYSGLRCSDSCRAGVQH--LQNNIFSIKTQKTGTIITVELPDGFMKLLAM----- 247
             E L   GLR S+     +           + T K      V +     K + +     
Sbjct: 138 IIETLYGCGLRVSELVNLKISDLFFDEGFIRV-TGKGDKQRFVPISSITKKYINLYIQGQ 196

Query: 248 ------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
                  P   +T F+N   +++         K    K+G+ K  S H  R   AT   +
Sbjct: 197 RQHVPYIPEFGDTVFLNRRGKQLTRVMIFTIVKRLTEKSGLKKNISPHTFRHSFATHLLE 256

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
            GA    +    G +++   E Y    DR  L     +
Sbjct: 257 NGADLRAIQLMLGHESITTTEIYMH-VDRSHLAKVMEK 293


>gi|307692332|ref|ZP_07634569.1| tyrosine recombinase XerD subunit [Ruminococcaceae bacterium D16]
          Length = 293

 Score =  143 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 43/277 (15%), Positives = 98/277 (35%), Gaps = 23/277 (8%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVE---SRKH 128
           L  EY  +      + N+  S+     Q        D +  ++  + +   V+    +  
Sbjct: 7   LFEEYLTTE--KKASANTVSSYLRDMHQFETAMAEQDLELTELAVQDVELYVDGLTRKGK 64

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS- 187
           + ++  + + S++  +   +    +  NP   V   K + +  +  T ++++ F      
Sbjct: 65  SAATVTRSIASIKSFYNCMIALGIMDRNPAKDVVAAKVERKLPQILTGKEVELFLEQPDC 124

Query: 188 ---EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
              +G + R   E L  +G+R S+     V  L      +  +  G    + L    ++ 
Sbjct: 125 SDLKGFRDRAMLELLYATGIRVSELIALDVDDLNLPAGVLHCESKGRERIIPLYHTAIRA 184

Query: 245 LA----------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292
           L+          +    +   F+N   ++M+   F    K    KAG+ K  + H +R  
Sbjct: 185 LSDYITQVRPQLVESPEETALFVNMSGERMSRQGFWKLIKHYQEKAGIQKDITPHTLRHS 244

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            A    + GA    +    G   +   + Y++   + 
Sbjct: 245 FAAHLLENGADLRSIQEMLGHADISSTQIYSRLVSQK 281


>gi|237807746|ref|YP_002892186.1| tyrosine recombinase XerD [Tolumonas auensis DSM 9187]
 gi|237500007|gb|ACQ92600.1| tyrosine recombinase XerD [Tolumonas auensis DSM 9187]
          Length = 297

 Score =  143 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 50/290 (17%), Positives = 107/290 (36%), Gaps = 30/290 (10%)

Query: 74  LISEYRKSAHWGS--LAVNSRISFESYFDQIIRKSGDFD-----YRKITTKHIRSGVESR 126
           LI ++     W    L+ N+  S+ +   ++                +      +    +
Sbjct: 7   LIEQFL-DMLWLDRGLSDNTISSYRTDLYKLNDWLDSKASSYLTLDTLLLHAYLAWRIDQ 65

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185
               +S  + L+++R  +++ +R++  A +P ++++ PK      +  ++E ++   +  
Sbjct: 66  GFKATSTARLLSALRRFYQFLIREQLRADDPTVALDSPKLPLRLPKDISEEQVEALLAEP 125

Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---------- 232
                   + +   E L  +GLR S+     +  L +N+  ++    G            
Sbjct: 126 DVQDPIELRDKAMLELLYATGLRVSELVGLQMHQLASNMAYVRVTGKGNKDRLVPTGEEA 185

Query: 233 ---ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAH 287
              I   + +G M LL       +  F +N  Q+M    F    K  A +A +  + S H
Sbjct: 186 QYWIQRFMREGRMTLLHEQAS--DVLFPSNRSQQMTRQTFWHRIKLYAVRANITSDLSPH 243

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
            +R   AT   + GA    +    G   +   + YT  A + RL   +  
Sbjct: 244 TLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-QARLQELHQE 292


>gi|198277388|ref|ZP_03209919.1| hypothetical protein BACPLE_03600 [Bacteroides plebeius DSM 17135]
 gi|198269886|gb|EDY94156.1| hypothetical protein BACPLE_03600 [Bacteroides plebeius DSM 17135]
          Length = 303

 Score =  143 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 59/286 (20%), Positives = 115/286 (40%), Gaps = 24/286 (8%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIR---SGVES 125
           K +I +YR+      SL+ N+  ++ +  D++    +     + ++T +++    +G+  
Sbjct: 7   KSIIIKYRQYLKLEKSLSANTVEAYLTDLDKLFAFLELESIHFTEVTLENLETFSAGLRD 66

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
               P S  + L+ +R  F++ + ++Y+  +P   +E P+         T E++ +    
Sbjct: 67  IGIHPRSQARILSGIRSFFRFLLLEDYIQQDPSELLESPQIGKHLPDVLTVEEIDRLIGS 126

Query: 186 WS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-VELPDG 240
                 EG + R   E L   GLR S+ C   +  L      IK +  G+    V +   
Sbjct: 127 IDRSTREGQRNRAILETLYSCGLRVSELCNLKLSDLYLKEKFIKVEGKGSKQRLVPISPR 186

Query: 241 FMKLLA----------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288
            +  L           + P  ++  FI+   + ++        K  A + G+ K  S H 
Sbjct: 187 AIHELELYFPDRNEGLIKPGYEDFVFISRFGKNISRIMVFHIIKELAEQIGLKKTISPHT 246

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIK 334
            R   AT   + GA    +    G +++   E YT   DR RL  +
Sbjct: 247 FRHSFATHLLEGGANLRAIQCMLGHESIGTTEIYTH-LDRSRLRQE 291


>gi|113969139|ref|YP_732932.1| tyrosine recombinase XerD [Shewanella sp. MR-4]
 gi|113883823|gb|ABI37875.1| tyrosine recombinase XerD [Shewanella sp. MR-4]
          Length = 300

 Score =  143 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 48/288 (16%), Positives = 106/288 (36%), Gaps = 26/288 (9%)

Query: 74  LISEYRKSAHW--GSLAVNSRISFE---SYFDQIIRKSGDFDYRKITT--KHIRSGVESR 126
           LI  +     W    L+ N+  ++     +FD+  +  G      +    +   +    +
Sbjct: 10  LIDAFLDDL-WSSKGLSDNTLSAYRTDLRHFDRYQQSQGLRLIEVVQADVRAYLAYRVEQ 68

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185
           +   +S+ + L+S+R  + + ++ + +A +P   +E PK   +     ++  + +  +  
Sbjct: 69  QFARTSSARLLSSLRRFYTYLLQTKQIAGDPMALIESPKLSRQLPDSLSESQVDRLLAEP 128

Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGF 241
                   + +   E L  +GLR S+     ++ +      ++   K G    V + +  
Sbjct: 129 NVDDPVECRDKAMLELLYATGLRVSELVGLTLEQMSLRQGLVRIVGKGGKERLVPMGELA 188

Query: 242 ----------MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGV 289
                      +   +  +  +  F +   Q M    F    K  A++AG+    S H +
Sbjct: 189 ITEVERYLSSARHELLGNVQSDVVFPSKRSQMMTRQTFWHRIKLYASRAGIETELSPHTL 248

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
           R   AT   + GA    +    G   +   + YT  A R RL   + +
Sbjct: 249 RHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVA-RARLQELHQQ 295


>gi|226949108|ref|YP_002804199.1| tyrosine recombinase XerD [Clostridium botulinum A2 str. Kyoto]
 gi|226843555|gb|ACO86221.1| tyrosine recombinase XerD [Clostridium botulinum A2 str. Kyoto]
          Length = 291

 Score =  143 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 43/282 (15%), Positives = 106/282 (37%), Gaps = 21/282 (7%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVESR 126
           K +I  Y K     +L+ N+  ++    ++      +          +T       ++  
Sbjct: 2   KNIIENYIKDLQKKNLSKNTLEAYRRDVEKFSEFVRNREEKILSVDTVTIMAFVQYLQRE 61

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
               SS ++ + S+R  +K+ +++  V+ +P L  E PK +    +  + E++ +  +  
Sbjct: 62  GRATSSIVRNIVSIRNFYKYLIKKNMVSEDPTLGYEIPKIERTIPKILSVEEVDKLLNSP 121

Query: 187 S---EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG--- 240
               +G + +   E +  +G++ ++     +  +      IK + +     + +P G   
Sbjct: 122 DSSKKGLRDKAMLELMYATGVKITELLNLNIYDINLKFNYIKCRGSKKRERI-IPIGSYA 180

Query: 241 ---FMKLLAMTPIGK----ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRK 291
                  L + P       +  F+N    +M    F    K  A +A ++K   ++ +R 
Sbjct: 181 IKCLKNYLEVRPAINVYNLDYLFLNLKGTQMTRQGFWKIIKFYAKEASIDKEIDSYTLRH 240

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
             A      GA    +    G K +   + Y+  + + ++  
Sbjct: 241 SFAVHLLQNGADIKSVQELLGHKDLAATQIYSSISKKSKIAE 282


>gi|149181661|ref|ZP_01860154.1| site-specific tyrosine recombinase XerD [Bacillus sp. SG-1]
 gi|148850639|gb|EDL64796.1| site-specific tyrosine recombinase XerD [Bacillus sp. SG-1]
          Length = 297

 Score =  143 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 38/257 (14%), Positives = 95/257 (36%), Gaps = 21/257 (8%)

Query: 89  VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI---QFLTSMRVLFK 145
            + +   ++Y   I        +  +   +I   +   K+   SA    + + S+R   +
Sbjct: 24  DSYQRDLKNYMKFIQNVDSAESWNDVQRVNITGFLGHLKNEGKSAKTVARHVASIRSFHQ 83

Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLAFEFLLY 201
           + +R++    +P + +E PK +    +  + ++++          + G + +   E L  
Sbjct: 84  FLLREKVTDQDPSIHIESPKMERSLPKVLSIDEVEALLEAPQESSALGIRDKAMLEVLYA 143

Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM-----------TP 249
           +G+R S+  R  +  +   +  ++   K      + +    + +L               
Sbjct: 144 TGIRVSELIRLKMDDVHLKMGFVRCIGKGNKERIIPIGKAAITVLEKYLLEGRPKLVSKK 203

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHEL 307
              ++ F+N+  + ++   F    K  A +A + K  + H +R   AT   + GA    +
Sbjct: 204 HKDDSLFLNHHGKGLSRQGFWKILKGLAAEAKITKELTPHTLRHSFATHLLENGADLRAV 263

Query: 308 MATYGWKTVDQAETYTK 324
               G   +   + YT 
Sbjct: 264 QEMLGHVDISTTQIYTH 280


>gi|22127152|ref|NP_670575.1| site-specific tyrosine recombinase XerD [Yersinia pestis KIM 10]
 gi|45443323|ref|NP_994862.1| site-specific tyrosine recombinase XerD [Yersinia pestis biovar
           Microtus str. 91001]
 gi|51597478|ref|YP_071669.1| site-specific tyrosine recombinase XerD [Yersinia
           pseudotuberculosis IP 32953]
 gi|108806374|ref|YP_650290.1| site-specific tyrosine recombinase XerD [Yersinia pestis Antiqua]
 gi|108813251|ref|YP_649018.1| site-specific tyrosine recombinase XerD [Yersinia pestis Nepal516]
 gi|145597930|ref|YP_001162006.1| site-specific tyrosine recombinase XerD [Yersinia pestis Pestoides
           F]
 gi|150260097|ref|ZP_01916825.1| integrase/recombinase [Yersinia pestis CA88-4125]
 gi|153948372|ref|YP_001399863.1| site-specific tyrosine recombinase XerD [Yersinia
           pseudotuberculosis IP 31758]
 gi|162418404|ref|YP_001608154.1| site-specific tyrosine recombinase XerD [Yersinia pestis Angola]
 gi|165924857|ref|ZP_02220689.1| tyrosine recombinase XerD [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165937373|ref|ZP_02225937.1| tyrosine recombinase XerD [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|166010314|ref|ZP_02231212.1| tyrosine recombinase XerD [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166212682|ref|ZP_02238717.1| tyrosine recombinase XerD [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167399752|ref|ZP_02305270.1| tyrosine recombinase XerD [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167418760|ref|ZP_02310513.1| tyrosine recombinase XerD [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167425367|ref|ZP_02317120.1| tyrosine recombinase XerD [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|170023169|ref|YP_001719674.1| site-specific tyrosine recombinase XerD [Yersinia
           pseudotuberculosis YPIII]
 gi|186896598|ref|YP_001873710.1| site-specific tyrosine recombinase XerD [Yersinia
           pseudotuberculosis PB1/+]
 gi|218928065|ref|YP_002345940.1| site-specific tyrosine recombinase XerD [Yersinia pestis CO92]
 gi|229837578|ref|ZP_04457740.1| site-specific tyrosine recombinase [Yersinia pestis Pestoides A]
 gi|229840801|ref|ZP_04460960.1| site-specific tyrosine recombinase [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229842640|ref|ZP_04462795.1| site-specific tyrosine recombinase [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229903707|ref|ZP_04518820.1| site-specific tyrosine recombinase [Yersinia pestis Nepal516]
 gi|270487486|ref|ZP_06204560.1| tyrosine recombinase XerD [Yersinia pestis KIM D27]
 gi|294502941|ref|YP_003567003.1| tyrosine recombinase [Yersinia pestis Z176003]
 gi|34222946|sp|Q8ZHK1|XERD_YERPE RecName: Full=Tyrosine recombinase xerD
 gi|21960213|gb|AAM86826.1|AE013928_11 site-specific recombinase [Yersinia pestis KIM 10]
 gi|45438192|gb|AAS63739.1| integrase/recombinase [Yersinia pestis biovar Microtus str. 91001]
 gi|51590760|emb|CAH22405.1| Probable site-specific integrase/recombinase [Yersinia
           pseudotuberculosis IP 32953]
 gi|108776899|gb|ABG19418.1| tyrosine recombinase XerD subunit [Yersinia pestis Nepal516]
 gi|108778287|gb|ABG12345.1| tyrosine recombinase XerD subunit [Yersinia pestis Antiqua]
 gi|115346676|emb|CAL19559.1| integrase/recombinase [Yersinia pestis CO92]
 gi|145209626|gb|ABP39033.1| tyrosine recombinase XerD subunit [Yersinia pestis Pestoides F]
 gi|149289505|gb|EDM39582.1| integrase/recombinase [Yersinia pestis CA88-4125]
 gi|152959867|gb|ABS47328.1| tyrosine recombinase XerD [Yersinia pseudotuberculosis IP 31758]
 gi|162351219|gb|ABX85167.1| tyrosine recombinase XerD [Yersinia pestis Angola]
 gi|165914847|gb|EDR33460.1| tyrosine recombinase XerD [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|165923057|gb|EDR40208.1| tyrosine recombinase XerD [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165990800|gb|EDR43101.1| tyrosine recombinase XerD [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166205974|gb|EDR50454.1| tyrosine recombinase XerD [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166962754|gb|EDR58775.1| tyrosine recombinase XerD [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167050460|gb|EDR61868.1| tyrosine recombinase XerD [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167055767|gb|EDR65551.1| tyrosine recombinase XerD [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|169749703|gb|ACA67221.1| tyrosine recombinase XerD [Yersinia pseudotuberculosis YPIII]
 gi|186699624|gb|ACC90253.1| tyrosine recombinase XerD [Yersinia pseudotuberculosis PB1/+]
 gi|229679477|gb|EEO75580.1| site-specific tyrosine recombinase [Yersinia pestis Nepal516]
 gi|229690950|gb|EEO83004.1| site-specific tyrosine recombinase [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229697167|gb|EEO87214.1| site-specific tyrosine recombinase [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229704266|gb|EEO91277.1| site-specific tyrosine recombinase [Yersinia pestis Pestoides A]
 gi|262360976|gb|ACY57697.1| tyrosine recombinase [Yersinia pestis D106004]
 gi|262364916|gb|ACY61473.1| tyrosine recombinase [Yersinia pestis D182038]
 gi|270335990|gb|EFA46767.1| tyrosine recombinase XerD [Yersinia pestis KIM D27]
 gi|294353400|gb|ADE63741.1| tyrosine recombinase [Yersinia pestis Z176003]
 gi|320014032|gb|ADV97603.1| site-specific tyrosine recombinase [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 299

 Score =  143 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 53/283 (18%), Positives = 108/283 (38%), Gaps = 27/283 (9%)

Query: 74  LISEYRKSAHW--GSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVESR--- 126
           LI ++   A W   +LA N+  S+      ++      + D  + + + ++S +  R   
Sbjct: 8   LIEQFL-DALWLERNLAENTLASYRLDLHALVGWLTHHNSDLLRASPQDLQSFLAERIEG 66

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185
            +  +S+ + L++MR LF++  R++    +P   +  PK      +  ++  +    +  
Sbjct: 67  GYKATSSARLLSAMRRLFQYLYREKLREDDPTALLSSPKLPQRLPKDLSEAQVDALLNSP 126

Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG- 240
                   + +   E L  +GLR S+     +  +      ++   K      V L +  
Sbjct: 127 NVDIPLELRDKAMLEVLYATGLRVSELVGLTISDVSLRQGVVRVIGKGNKERLVPLGEEA 186

Query: 241 ------FMKLLAMTPIGK---ETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288
                 +M+      +     +  F +N  Q+M    F    K  A  AG++    S H 
Sbjct: 187 VYWIENYMEHGRPWLVNGASLDVLFPSNRSQQMTRQTFWHRIKHYAILAGIDSERLSPHV 246

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIR 330
           +R   AT   + GA    +    G   +   + YT  A +R+R
Sbjct: 247 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLR 289


>gi|295108294|emb|CBL22247.1| tyrosine recombinase XerD subunit [Ruminococcus obeum A2-162]
          Length = 294

 Score =  143 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 39/262 (14%), Positives = 92/262 (35%), Gaps = 22/262 (8%)

Query: 83  HWGSLAVNSRISFESYFDQIIRKSGDFDYRKI------TTKHIRSGVESRKHTPSSAIQF 136
              + + N+ +S+E    ++IR   + D            +   + ++S     S+  + 
Sbjct: 14  ETKNTSKNTEVSYERDLKKLIRYLQEQDLTSFSEVTCTDLQGYLNKIKSENLAASTISRN 73

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FWSEGSQP 192
           + S+R L+ + +++  VA +P   +  PK + +     + E++ +          +G + 
Sbjct: 74  IASIRALYHYLLKKGIVAEDPTEVLHTPKIEKKLPEILSVEEVDRLLKQPDIRTPKGIRD 133

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD-------GFMKLL 245
               E L  +G+R S+        +   +  +    +     + + +        +M+  
Sbjct: 134 NAMMELLYATGMRVSELIHLSTTDINLQMGYVVCHDSDKERIIPIGNVSRNAILQYMEHS 193

Query: 246 AMTPIGK---ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
                        F N   + M+   F    K  A  AG+++  + H +R   A      
Sbjct: 194 RGFFTKDTNESALFTNCSGKSMSRQGFWKVLKGYAADAGIHRDITPHTLRHSFAAHMLQN 253

Query: 301 GATAHELMATYGWKTVDQAETY 322
           GA    +    G   +   + Y
Sbjct: 254 GADVKSVQEMLGHADISSTQIY 275


>gi|271499210|ref|YP_003332235.1| tyrosine recombinase XerD [Dickeya dadantii Ech586]
 gi|270342765|gb|ACZ75530.1| tyrosine recombinase XerD [Dickeya dadantii Ech586]
          Length = 299

 Score =  143 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 50/280 (17%), Positives = 102/280 (36%), Gaps = 26/280 (9%)

Query: 72  KWLISEYRKSAHW--GSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVESR- 126
           + LI ++   A W   +LA N+  S+ +    +       D    +     ++  +  R 
Sbjct: 6   QALIEQFL-DALWLERNLAENTLSSYRNDLSSLAEWLAHHDRHLLEAQPSDLQDFLAERL 64

Query: 127 --KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
              +  +S+ + L++MR LF++  R++    +P   +  PK      +  T+  ++   +
Sbjct: 65  EGGYKATSSARLLSAMRRLFQYLYREKRRTDDPSAPLSSPKLPQRLPKDLTEAQVEALLA 124

Query: 185 F----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT------ 234
                     + +   E L  +GLR S+     +  +      ++    G          
Sbjct: 125 APVTDQPIELRDKAMLELLYATGLRVSELVGLTMSDVSLRQGVVRVVGKGNKERLVPLGE 184

Query: 235 --VELPDGFMKLLAMTPIGKETF---FINNDKQKMNATQFSIWFKAKATKAGVN---KSA 286
             V   + +++      +  +T    F +N  Q+M    F    K  AT A ++    S 
Sbjct: 185 EAVYWLEQYLEYSRPWLLNGQTLDVLFPSNRAQQMTRQTFWHRIKHYATLASIDSNKLSP 244

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           H +R   AT   + GA    +    G   +   + YT  A
Sbjct: 245 HVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA 284


>gi|317493832|ref|ZP_07952249.1| tyrosine recombinase XerD [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316918159|gb|EFV39501.1| tyrosine recombinase XerD [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 299

 Score =  143 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 50/280 (17%), Positives = 102/280 (36%), Gaps = 26/280 (9%)

Query: 72  KWLISEYRKSAHW--GSLAVNSRISFESYF----DQIIRKSGDFDYRKITT-KHIRSGVE 124
           + LI ++   A W   +LA N+  S+        + +     D    +++  +   +   
Sbjct: 6   QALIEQFL-DALWLERNLAENTLASYRLDLRSLAEWLAHHHSDLLLAQVSDLQDFLAERV 64

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
              +  +S+ + L++MR LF++  R++  + +P   +  PK      +  T+  +     
Sbjct: 65  DGGYKATSSARLLSAMRRLFQYFYREKMRSDDPTTLLSSPKLPQRLPKDLTEAQVDTLLQ 124

Query: 185 FW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPD 239
                     + +   E L  +GLR S+     +  +      ++   K      V L +
Sbjct: 125 TPCIENPIELRDKAMLEVLYATGLRVSELVGLTLADVSLRQGVVRVIGKGNKERLVPLGE 184

Query: 240 G-------FMKLLAMTPIGKETF---FINNDKQKMNATQFSIWFKAKATKAGVN---KSA 286
                   +++      +  +T    F +N  Q+M    F    K  A  AG++    S 
Sbjct: 185 EAVYWIEYYLEYGRPWLLNGQTIDVLFPSNRTQQMTRQTFWHRIKHYAVLAGIDSSRLSP 244

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           H +R   AT   + GA    +    G   +   + YT  A
Sbjct: 245 HVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA 284


>gi|153939513|ref|YP_001391125.1| tyrosine recombinase XerD [Clostridium botulinum F str. Langeland]
 gi|170757059|ref|YP_001781413.1| tyrosine recombinase XerD [Clostridium botulinum B1 str. Okra]
 gi|152935409|gb|ABS40907.1| tyrosine recombinase XerD [Clostridium botulinum F str. Langeland]
 gi|169122271|gb|ACA46107.1| tyrosine recombinase XerD [Clostridium botulinum B1 str. Okra]
 gi|295319169|gb|ADF99546.1| tyrosine recombinase XerD [Clostridium botulinum F str. 230613]
          Length = 291

 Score =  143 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 43/282 (15%), Positives = 106/282 (37%), Gaps = 21/282 (7%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVESR 126
           K +I  Y K     +L+ N+  ++    ++      +          +T       ++  
Sbjct: 2   KNIIENYIKDLQKKNLSKNTLEAYRRDVEKFSEFVRNREEKILSVDTVTIMAFVQYLQRE 61

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
               SS ++ + S+R  +K+ +++  V+ +P L  E PK +    +  + E++ +  +  
Sbjct: 62  GRATSSIVRNIVSIRNFYKYLIKKNMVSEDPTLGYEIPKIERTIPKILSVEEVDKLLNSP 121

Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG--- 240
               +G + +   E +  +G++ ++     +  +      IK + +     + +P G   
Sbjct: 122 NSSKKGLRDKAMLELMYATGVKITELLNLNIYDINLKFNYIKCRGSKKRERI-IPIGSYA 180

Query: 241 ---FMKLLAMTPIGK----ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRK 291
                  L + P       +  F+N    +M    F    K  A +A ++K   ++ +R 
Sbjct: 181 IKCLKNYLEVRPAINVYNLDYLFLNLKGTQMTRQGFWKIIKFYAKEASIDKEIDSYTLRH 240

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
             A      GA    +    G K +   + Y+  + + ++  
Sbjct: 241 SFAVHLLQNGADIKSVQELLGHKDLAATQIYSSISKKSKIAE 282


>gi|150009884|ref|YP_001304627.1| tyrosine type site-specific recombinase [Parabacteroides distasonis
           ATCC 8503]
 gi|256838407|ref|ZP_05543917.1| tyrosine recombinase XerD [Parabacteroides sp. D13]
 gi|262382840|ref|ZP_06075977.1| tyrosine recombinase XerD [Bacteroides sp. 2_1_33B]
 gi|298374238|ref|ZP_06984196.1| tyrosine recombinase XerD [Bacteroides sp. 3_1_19]
 gi|301312384|ref|ZP_07218300.1| tyrosine recombinase XerD [Bacteroides sp. 20_3]
 gi|149938308|gb|ABR45005.1| tyrosine type site-specific recombinase [Parabacteroides distasonis
           ATCC 8503]
 gi|256739326|gb|EEU52650.1| tyrosine recombinase XerD [Parabacteroides sp. D13]
 gi|262295718|gb|EEY83649.1| tyrosine recombinase XerD [Bacteroides sp. 2_1_33B]
 gi|298268606|gb|EFI10261.1| tyrosine recombinase XerD [Bacteroides sp. 3_1_19]
 gi|300829567|gb|EFK60221.1| tyrosine recombinase XerD [Bacteroides sp. 20_3]
          Length = 301

 Score =  143 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 48/276 (17%), Positives = 104/276 (37%), Gaps = 23/276 (8%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRKH 128
           K +I+ Y        SL+ NS  ++ +  D+++R + D   D ++I+   ++  +   + 
Sbjct: 5   KDIINRYNTYLRLEKSLSANSIDAYLTDLDKLLRFAEDEKKDVKEISYDDLQQFIAQLRD 64

Query: 129 ---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
               P S  + ++ ++  +++ +   Y+  +P   +E PK   +     T  ++      
Sbjct: 65  IGIHPRSQARIISGIKSFYRFLLLDNYITNDPTELLESPKIGLKLPEVLTVNEINSILDT 124

Query: 186 ----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-VELPDG 240
                 EG + R   E L   GLR S+        +      I+ +  G+    V + + 
Sbjct: 125 IDLTLPEGQRNRAMLEVLYSCGLRVSELTGLRYSDIYPKEGFIRVEGKGSKQRLVPISEV 184

Query: 241 FMKLLAMTPIGKET----------FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288
            ++ +      + +           F++     ++        K +   AG++K  S H 
Sbjct: 185 ALREIKNYLYDRNSVVVKKGFEDILFLSRRGTALSRIMVFHIIKQQTEAAGIHKNVSPHT 244

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            R   AT   + GA    +    G + +   E YT 
Sbjct: 245 FRHSFATHLLEGGANLRAIQEMLGHEKITTTEIYTH 280


>gi|251790996|ref|YP_003005717.1| tyrosine recombinase XerD [Dickeya zeae Ech1591]
 gi|247539617|gb|ACT08238.1| tyrosine recombinase XerD [Dickeya zeae Ech1591]
          Length = 299

 Score =  143 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 49/278 (17%), Positives = 100/278 (35%), Gaps = 26/278 (9%)

Query: 74  LISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVESR 126
           LI ++   A W   +LA N+  S+ +    +              + +  +   +     
Sbjct: 8   LIEQFL-DALWLERNLAENTLSSYRNDLCSLAEWLAHHNSDLLQAQPLDLQGFLAERLEG 66

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185
            +  +S+ + L++MR LF++  R++  A +P   +  PK      +  T+  ++   +  
Sbjct: 67  GYKATSSARLLSAMRRLFQYLYREKRRADDPSAPLSSPKLPQRLPKDLTEAQVEALLAAP 126

Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-------- 234
                   + +   E L  +GLR S+     +  +      ++    G            
Sbjct: 127 VTDQPIELRDKAMLELLYATGLRVSELVGLTISDVSLRQGVVRVVGKGNKERLVPLGEEA 186

Query: 235 VELPDGFMKLLAMTPIGKETF---FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288
           V   + +++      +  +T    F +N  Q+M    F    K  AT A ++    S H 
Sbjct: 187 VYWLEQYLEFSRPWLLNGQTLDVLFPSNRAQQMTRQTFWHRIKHYATLASIDSNKLSPHV 246

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           +R   AT   + GA    +    G   +   + YT  A
Sbjct: 247 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA 284


>gi|145636556|ref|ZP_01792224.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae
           PittHH]
 gi|145270381|gb|EDK10316.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae
           PittHH]
          Length = 297

 Score =  143 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 46/284 (16%), Positives = 96/284 (33%), Gaps = 27/284 (9%)

Query: 73  WLISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFDYR-----KITTKHIRSGVES 125
            LI  +     W    L+ N+  S+      +       D        +  +        
Sbjct: 5   ALIDLFLNEY-WIEKGLSENTVQSYRLDLTALCDWLDKNDLSLETLDAVDLQGFLGERLE 63

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS- 184
           + +  +S  + L++MR LF++  R++Y   +P   +  PK  +   +  T++ +    + 
Sbjct: 64  KGYKATSTARMLSAMRKLFQYLYREKYRVDDPSAVLSSPKLPSRLPKYLTEQQVSDLLNT 123

Query: 185 ---FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240
                    + +   E L  +GLR ++     ++++      ++   K      V + + 
Sbjct: 124 PDVEVPLELRDKAMLELLYATGLRVTELVSLTIENMSVQQGVVRVIGKGNKERIVPMGEE 183

Query: 241 FMKLLAMTPIGKETFFIN----------NDKQKMNATQFSIWFKAKATKAGVNK---SAH 287
               +    +      +N             Q+M    F    K  A  A ++    S H
Sbjct: 184 AAYWVRQFILYGRPVLLNGQSSDVVFPSQRAQQMTRQTFWHRVKHYAILADIDADTLSPH 243

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            +R   AT   + GA    +    G   +   + YT  A + RL
Sbjct: 244 VLRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVA-KERL 286


>gi|229174766|ref|ZP_04302290.1| Tyrosine recombinase xerD [Bacillus cereus MM3]
 gi|228608756|gb|EEK66054.1| Tyrosine recombinase xerD [Bacillus cereus MM3]
          Length = 296

 Score =  143 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 44/271 (16%), Positives = 104/271 (38%), Gaps = 25/271 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVESRKHTPSSAI---QFL 137
             LA N+ +S+E      ++   +      + ++T  HI + ++  K    S+    + +
Sbjct: 16  KGLAKNTVVSYERDLKSYVKYLQNVEQAKSFHEVTRLHIVNFLQHLKENGKSSKTLARHI 75

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPR 193
            S+R   ++ +R+  V  +P + +E P+ + +  +  + ++++            G + +
Sbjct: 76  ASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLSIDEVEALLQTPKMTSAFGVRDK 135

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGK 252
              E L  +GLR S+     ++ +   +  ++   K      + L     + +       
Sbjct: 136 AMLELLYATGLRVSELIALNLEDVHLTMGFVRCIGKGNKERIIPLGSLATEAIQKYIEKG 195

Query: 253 ----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
                     +  F+N+   +++   F    K  A +A + K  + H +R   AT   + 
Sbjct: 196 RRELMGKKVVDALFLNHHGNRLSRQGFWKILKRLAKEANIEKELTPHTLRHSFATHLLEN 255

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRL 331
           GA    +    G   +   + YT    + RL
Sbjct: 256 GADLRAVQEMLGHADISTTQIYTH-VSKARL 285


>gi|16272264|ref|NP_438476.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae Rd
           KW20]
 gi|260581222|ref|ZP_05849041.1| tyrosine recombinase XerD [Haemophilus influenzae RdAW]
 gi|1175025|sp|P44630|XERD_HAEIN RecName: Full=Tyrosine recombinase xerD
 gi|1573278|gb|AAC21974.1| integrase/recombinase (xerD) [Haemophilus influenzae Rd KW20]
 gi|260092147|gb|EEW76091.1| tyrosine recombinase XerD [Haemophilus influenzae RdAW]
          Length = 297

 Score =  143 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 48/284 (16%), Positives = 98/284 (34%), Gaps = 27/284 (9%)

Query: 73  WLISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFDYR-----KITTKHIRSGVES 125
            LI  +     W    L+ N+  S+      +       D        +  +        
Sbjct: 5   ALIDLFLNEY-WIEKGLSENTVQSYRLDLTALCDWLDKNDLSLETLDAVDLQGFLGERLE 63

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS- 184
           + +  +S  + L++MR LF++  R++Y   +P   +  PK  +   +  T++ +    + 
Sbjct: 64  KGYKATSTARMLSAMRKLFQYLYREKYRVDDPSAVLSSPKLPSRLPKYLTEQQVSDLLNT 123

Query: 185 ---FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240
                    + +   E L  +GLR ++     ++++      ++   K      V + + 
Sbjct: 124 PNVEVPLELRDKAMLELLYATGLRVTELVSLTIENMSVQQGVVRVIGKGNKERIVPMGEE 183

Query: 241 FMKL-----LAMTPI-----GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAH 287
                    L   P+       +  F +   Q+M    F    K  A  A ++    S H
Sbjct: 184 AAYWVRQFMLYGRPVLLNGQSSDVVFPSQRAQQMTRQTFWHRVKHYAILADIDADALSPH 243

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            +R   AT   + GA    +    G   +   + YT  A + RL
Sbjct: 244 VLRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVA-KERL 286


>gi|172057038|ref|YP_001813498.1| tyrosine recombinase XerD [Exiguobacterium sibiricum 255-15]
 gi|171989559|gb|ACB60481.1| tyrosine recombinase XerD [Exiguobacterium sibiricum 255-15]
          Length = 294

 Score =  143 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 47/269 (17%), Positives = 110/269 (40%), Gaps = 23/269 (8%)

Query: 85  GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLT 138
             ++ N+  ++ +  +Q +    + G     ++T  HI   +ES    + + ++  +  +
Sbjct: 16  RQMSANTAAAYRNDLNQYLTTLEQQGISSAEEVTRHHIVLHIESLLQAQKSRATVRRSTS 75

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FWSEGSQPRL 194
           S+R   ++ V ++ V  +P   ++ PK   +    W++ D+ +             +   
Sbjct: 76  SIRSFHQFLVERQIVRHDPSRHLDLPKPDKKLPVVWSQTDIVRLLDSVVGNDPLVRRDAA 135

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-ELPDG-------FMKLLA 246
             E L  +G+R S+  +  +  LQ  +  +     G    +  +          +++L  
Sbjct: 136 MLELLYGTGMRVSELLQLTLSDLQLELGYLSCLGKGNKTRIIPISQTAIDSVSVYLELAR 195

Query: 247 MTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302
            +  G++T   F+N+   +++   F    K +A +AG+ K  + H +R   AT   + GA
Sbjct: 196 NSLGGRQTDYVFLNSRGDRLSRQGFWKMIKRRAKEAGIEKDITPHVLRHSFATHLLENGA 255

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRL 331
               +    G   +   + YT   ++ RL
Sbjct: 256 DLRVVQEMLGHADLSTTQMYTH-VNKARL 283


>gi|78067360|ref|YP_370129.1| site-specific tyrosine recombinase XerD [Burkholderia sp. 383]
 gi|77968105|gb|ABB09485.1| Tyrosine recombinase XerD [Burkholderia sp. 383]
          Length = 316

 Score =  143 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 50/268 (18%), Positives = 92/268 (34%), Gaps = 22/268 (8%)

Query: 85  GSLAVNSRISFES---YFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSSAIQFLTSM 140
             LA N+  ++      F Q + ++ D     +    +   + +R     +S+ + L+  
Sbjct: 39  HGLARNTLDAYRRDLVLFSQWLAETHDAPLDSVDEAMVTGYIAARSDGKATSSNRRLSVF 98

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAF 196
           R  + WAVR+  V+ +P L +   K+        ++  ++        G+    + R   
Sbjct: 99  RRYYGWAVREHRVSADPTLRITSAKQAARFPSTLSEAQVEALLGAPDIGTPLGLRDRTML 158

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLLAM 247
           E +  SGLR S+        +  N   ++    G+   +          +          
Sbjct: 159 ELMYASGLRVSELVMLKTVEVGLNEGVVRVMGKGSKERLVPFGEVAHGWIERYLRDARPA 218

Query: 248 T--PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGAT 303
                  +  F+      M   QF    K  A  A V  + S H +R   AT   + GA 
Sbjct: 219 LLGARAADALFVTARGDGMTRQQFWNIIKRHAQHAEVRAHLSPHTLRHAFATHLLNHGAD 278

Query: 304 AHELMATYGWKTVDQAETYTKGADRIRL 331
              +    G   +   + YT  A R RL
Sbjct: 279 LRVVQLLLGHSDISTTQIYTHVA-RERL 305


>gi|293391879|ref|ZP_06636213.1| tyrosine recombinase XerD [Aggregatibacter actinomycetemcomitans
           D7S-1]
 gi|290952413|gb|EFE02532.1| tyrosine recombinase XerD [Aggregatibacter actinomycetemcomitans
           D7S-1]
          Length = 297

 Score =  143 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 40/268 (14%), Positives = 87/268 (32%), Gaps = 23/268 (8%)

Query: 85  GSLAVNSRISFESYFDQII-----RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
             L+ N+  S+      +      R         +  +        + +  +S  + L++
Sbjct: 18  KGLSPNTVASYRLDLTALCDWLEARHLSLLSLDAVDLQTFLGERVEQDYKATSTARLLSA 77

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLA 195
           +R LF++  +++Y   +P   +  PK      +  T++ +    +          + +  
Sbjct: 78  IRKLFQYLYQEKYRTDDPSAVLSSPKLPNRLPKYLTEQQVTDLLNVQSLEQPIELRDKAM 137

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLA-----MTP 249
            E L  +GLR ++        +  N   ++   K      V + +     +        P
Sbjct: 138 LELLYATGLRVTELVSLNTNSINLNQGVVRVIGKGKKERIVPMGEEATHWVKQFMLFARP 197

Query: 250 I-----GKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG 301
           +       +  F +    +M    F    K  A  A ++    S H +R   AT   + G
Sbjct: 198 MLLGGQSSDVLFPSRRGTQMTRQTFWHRIKHYAVLAEIDSEMLSPHVLRHAFATHLVNHG 257

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRI 329
           A    +    G   +   + YT  A   
Sbjct: 258 ADLRVVQMLLGHSDLSTTQIYTHVAKER 285


>gi|217974605|ref|YP_002359356.1| tyrosine recombinase XerD [Shewanella baltica OS223]
 gi|217499740|gb|ACK47933.1| tyrosine recombinase XerD [Shewanella baltica OS223]
          Length = 300

 Score =  143 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 49/277 (17%), Positives = 96/277 (34%), Gaps = 27/277 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKI-----TTKHIRSGVESRKHTPSSAIQFLTS 139
             L+ N+  ++ +      R  G      +       +   +    +    +S+ + L+S
Sbjct: 22  KGLSDNTLSAYRTDLRHFDRYQGQQGVTLLAVSQADVRAYLAFRVEQDFARTSSARLLSS 81

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195
           +R  + + V+ + +  +P   VE PK         ++  + +  S      +   + +  
Sbjct: 82  LRRFYTYLVQTKQILADPMALVESPKLTRHLPDSLSESQVDRLLSEPNVEDAVECRDKAM 141

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPD------------GFM 242
            E L  +GLR S+     ++ +      ++   K G    V L +               
Sbjct: 142 LELLYATGLRVSELVGLTMEQMSLRQGLVRIVGKGGKERLVPLGELAITEVENYMKFARQ 201

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADA 300
           +LL       +  F +   Q M    F    K  A +AG+    S H +R   AT   + 
Sbjct: 202 ELLGNK--QSDVVFPSKRGQMMTRQTFWHRIKLYALRAGIETALSPHTLRHAFATHLLNH 259

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
           GA    +    G   +   + YT  A R RL   + +
Sbjct: 260 GADLRVVQLLLGHSDLSTTQIYTHVA-RARLQELHQQ 295


>gi|253700949|ref|YP_003022138.1| tyrosine recombinase XerD [Geobacter sp. M21]
 gi|251775799|gb|ACT18380.1| tyrosine recombinase XerD [Geobacter sp. M21]
          Length = 292

 Score =  143 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 49/267 (18%), Positives = 97/267 (36%), Gaps = 21/267 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFLTSMR 141
              A N+  ++    ++ +   G+ +   I    +   +   K     P S  + L+++R
Sbjct: 16  KGAAANTVAAYSRDLNRYLLFLGEREPDGIRPIDVTGFLAKLKGEGIAPRSRARALSALR 75

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-WSEGS---QPRLAFE 197
           +L ++ +R+ Y  +NP   VE PK   +     +  +++   S     G+   + +   E
Sbjct: 76  MLHRFLLREGYCELNPTAIVEAPKGVRKLPAVLSGREVEALLSSPHDTGAQELRDKAMLE 135

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM--------- 247
            L  +GLR S+     +  +  +   + T  K      V + +   +             
Sbjct: 136 LLYATGLRVSELVGLKLGEVNLSAGYLMTIGKGDKERLVPIGESACRATGAYLQKARGEL 195

Query: 248 -TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATA 304
                    F++     M+   F    K +A +AGV  S   H +R   AT   + GA  
Sbjct: 196 LKGKASPLLFLSRLGGGMSRQAFWNIIKKRALQAGVRASISPHTLRHSFATHLLENGADL 255

Query: 305 HELMATYGWKTVDQAETYTKGADRIRL 331
             +    G   +   + YT    R R+
Sbjct: 256 RSVQIMLGHADLSSTQIYTH-VTRERM 281


>gi|225174860|ref|ZP_03728857.1| tyrosine recombinase XerD [Dethiobacter alkaliphilus AHT 1]
 gi|225169500|gb|EEG78297.1| tyrosine recombinase XerD [Dethiobacter alkaliphilus AHT 1]
          Length = 295

 Score =  143 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 51/281 (18%), Positives = 107/281 (38%), Gaps = 30/281 (10%)

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVES 125
            TL+  I     S     LA N+  S+          ++++G     + +  +I   + S
Sbjct: 3   RTLRDFIH--YLSVE-KGLAKNTLESYNRDLRTYYTYLKQNGITSLEETSRSNIVGYLLS 59

Query: 126 RKHTPSSAIQF---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
            ++   +       + S+R  + +  ++ ++  NP   +E PK + +  R  T ++M   
Sbjct: 60  LQNMGKATSTLSRNMASIRSFYNYLFQERHLVENPAAELESPKLEKKLPRVLTPQEMDLL 119

Query: 183 KSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV--- 235
                +    G + +   E +  +G+R S+     +  +  +   I+    G+   +   
Sbjct: 120 LEQPDQTQVTGIRDKAMLEVIYATGIRVSELMSLDIGDVNLDAGFIRCLGKGSKERIIPL 179

Query: 236 ----------ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284
                      L +G  KL+     G+ + F+N    ++    F    K  AT+AG+ K 
Sbjct: 180 GSVAIRNVGRYLNEGRPKLVRQA--GEASLFVNQHGNRLTRQGFWKILKKYATRAGITKE 237

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            + H +R   AT   + GA    +    G   +   + YT+
Sbjct: 238 ITPHTMRHSFATHLLENGADLRSVQEMLGHADISTTQIYTQ 278


>gi|258593730|emb|CBE70071.1| Tyrosine recombinase xerD [NC10 bacterium 'Dutch sediment']
          Length = 295

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 47/277 (16%), Positives = 102/277 (36%), Gaps = 24/277 (8%)

Query: 72  KWLISEYRKSAH-WGSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVESRK 127
             LI +Y +       LA NS  ++     +I    ++ G   +R+++   +   + + +
Sbjct: 2   DNLIEDYLRYLAVEKGLAENSLAAYGRDLRRIVGYFKQGGVGSFREVSRGQVARLLLTLR 61

Query: 128 HT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
                P +  +  +S+R L+++ + Q++V  +P   +E            ++E++++  +
Sbjct: 62  EAGLAPRTVSRHTSSLRGLYRYLLTQDHVKEDPTAHLESSSPWVRLPGVLSQEEVERLLA 121

Query: 185 FW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPD 239
                   G + +   E L  +GLR S+     +  +   +  +    K G    V L  
Sbjct: 122 APLTSNPLGLRDKAMLELLYAAGLRVSEMVTLRLSEVDLEVGYVHCQGKGGKDRVVPLGR 181

Query: 240 GFMKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287
                +                  T F+N     +    F    +A A  AG+++  + H
Sbjct: 182 DAQTAVRRYLETSRPYLQRGWSSSTLFLNRFGYPLTRQGFWKLLRAYAIAAGIDRRVTPH 241

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            +R   AT   + GA    +    G   +   + YT 
Sbjct: 242 TLRHSFATHLLERGADLRAVQMMLGHADISTTQIYTH 278


>gi|71274794|ref|ZP_00651082.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella
           fastidiosa Dixon]
 gi|71897599|ref|ZP_00679844.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella
           fastidiosa Ann-1]
 gi|71902531|ref|ZP_00684453.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella
           fastidiosa Ann-1]
 gi|71164526|gb|EAO14240.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella
           fastidiosa Dixon]
 gi|71727745|gb|EAO30016.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella
           fastidiosa Ann-1]
 gi|71732502|gb|EAO34555.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella
           fastidiosa Ann-1]
          Length = 324

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 54/274 (19%), Positives = 97/274 (35%), Gaps = 30/274 (10%)

Query: 85  GSLAVNSRISFESYFDQIIR----KSGDFD-YRKITTKHIRSGVESRKHTPSSAIQFLTS 139
             L+ ++  S+    + + R    ++G              +    + ++P S  + L+ 
Sbjct: 38  HGLSRHTLNSYRRDLEGLARWNNGRAGPLATLTPPALLDYLTWRTQQHYSPLSNARLLSV 97

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195
           +R  F +AV   +   NP   +  P       +  T+  ++   +       EG + R  
Sbjct: 98  LRTFFSYAVECGWRNDNPSTLLAHPVLPHPLPKALTESQIEALLAAPSIETPEGLRNRAM 157

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLA-------- 246
            E +  +GLR S+     V  L      ++ T K G    V L +     L         
Sbjct: 158 LELMYAAGLRVSELVTLPVAMLNRRQGVLRITGKGGKERLVPLGEESQHWLQRYLEQARP 217

Query: 247 ---------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSA 294
                        G    FIN + ++++  QF  W K  A  AG+     S H +R   A
Sbjct: 218 SLAADKPIPADSDGDVPLFINTNLKRLSRQQFWRWIKHYAALAGIAPNKVSPHVLRHSFA 277

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           T   + GA    L    G +++   + YT  A +
Sbjct: 278 THLLNHGADLRALQMLLGHRSISTTQIYTLIARQ 311


>gi|30264167|ref|NP_846544.1| site-specific tyrosine recombinase XerD [Bacillus anthracis str.
           Ames]
 gi|47778274|ref|YP_020956.2| site-specific tyrosine recombinase XerD [Bacillus anthracis str.
           'Ames Ancestor']
 gi|49186997|ref|YP_030249.1| site-specific tyrosine recombinase XerD [Bacillus anthracis str.
           Sterne]
 gi|49480325|ref|YP_038149.1| site-specific tyrosine recombinase XerD [Bacillus thuringiensis
           serovar konkukian str. 97-27]
 gi|65321483|ref|ZP_00394442.1| COG4974: Site-specific recombinase XerD [Bacillus anthracis str.
           A2012]
 gi|118479292|ref|YP_896443.1| site-specific tyrosine recombinase XerD [Bacillus thuringiensis
           str. Al Hakam]
 gi|165871247|ref|ZP_02215897.1| integrase/recombinase XerD [Bacillus anthracis str. A0488]
 gi|167633747|ref|ZP_02392071.1| integrase/recombinase XerD [Bacillus anthracis str. A0442]
 gi|167639424|ref|ZP_02397695.1| integrase/recombinase XerD [Bacillus anthracis str. A0193]
 gi|170687265|ref|ZP_02878483.1| integrase/recombinase XerD [Bacillus anthracis str. A0465]
 gi|170705812|ref|ZP_02896275.1| integrase/recombinase XerD [Bacillus anthracis str. A0389]
 gi|177652642|ref|ZP_02935058.1| integrase/recombinase XerD [Bacillus anthracis str. A0174]
 gi|190565945|ref|ZP_03018864.1| integrase/recombinase XerD [Bacillus anthracis Tsiankovskii-I]
 gi|196038584|ref|ZP_03105892.1| integrase/recombinase XerD [Bacillus cereus NVH0597-99]
 gi|196047216|ref|ZP_03114432.1| integrase/recombinase XerD [Bacillus cereus 03BB108]
 gi|218905229|ref|YP_002453063.1| integrase/recombinase XerD [Bacillus cereus AH820]
 gi|225866075|ref|YP_002751453.1| integrase/recombinase XerD [Bacillus cereus 03BB102]
 gi|227816868|ref|YP_002816877.1| integrase/recombinase XerD [Bacillus anthracis str. CDC 684]
 gi|228929139|ref|ZP_04092166.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228947809|ref|ZP_04110096.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|229093151|ref|ZP_04224269.1| Tyrosine recombinase xerD [Bacillus cereus Rock3-42]
 gi|229123612|ref|ZP_04252807.1| Tyrosine recombinase xerD [Bacillus cereus 95/8201]
 gi|229186335|ref|ZP_04313500.1| Tyrosine recombinase xerD [Bacillus cereus BGSC 6E1]
 gi|229604915|ref|YP_002868390.1| integrase/recombinase XerD [Bacillus anthracis str. A0248]
 gi|254683858|ref|ZP_05147718.1| site-specific tyrosine recombinase XerD [Bacillus anthracis str.
           CNEVA-9066]
 gi|254721693|ref|ZP_05183482.1| site-specific tyrosine recombinase XerD [Bacillus anthracis str.
           A1055]
 gi|254736205|ref|ZP_05193911.1| site-specific tyrosine recombinase XerD [Bacillus anthracis str.
           Western North America USA6153]
 gi|254744094|ref|ZP_05201777.1| site-specific tyrosine recombinase XerD [Bacillus anthracis str.
           Kruger B]
 gi|254754126|ref|ZP_05206161.1| site-specific tyrosine recombinase XerD [Bacillus anthracis str.
           Vollum]
 gi|254758184|ref|ZP_05210211.1| site-specific tyrosine recombinase XerD [Bacillus anthracis str.
           Australia 94]
 gi|301055587|ref|YP_003793798.1| tyrosine recombinase [Bacillus anthracis CI]
 gi|30258812|gb|AAP28030.1| integrase/recombinase XerD [Bacillus anthracis str. Ames]
 gi|47551979|gb|AAT33431.2| integrase/recombinase XerD [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49180924|gb|AAT56300.1| integrase/recombinase XerD [Bacillus anthracis str. Sterne]
 gi|49331881|gb|AAT62527.1| integrase/recombinase (tyrosine recombinase) [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|118418517|gb|ABK86936.1| tyrosine recombinase XerD subunit [Bacillus thuringiensis str. Al
           Hakam]
 gi|164713166|gb|EDR18693.1| integrase/recombinase XerD [Bacillus anthracis str. A0488]
 gi|167512483|gb|EDR87858.1| integrase/recombinase XerD [Bacillus anthracis str. A0193]
 gi|167531153|gb|EDR93840.1| integrase/recombinase XerD [Bacillus anthracis str. A0442]
 gi|170129352|gb|EDS98216.1| integrase/recombinase XerD [Bacillus anthracis str. A0389]
 gi|170668882|gb|EDT19627.1| integrase/recombinase XerD [Bacillus anthracis str. A0465]
 gi|172081977|gb|EDT67045.1| integrase/recombinase XerD [Bacillus anthracis str. A0174]
 gi|190562864|gb|EDV16830.1| integrase/recombinase XerD [Bacillus anthracis Tsiankovskii-I]
 gi|196021965|gb|EDX60656.1| integrase/recombinase XerD [Bacillus cereus 03BB108]
 gi|196030307|gb|EDX68906.1| integrase/recombinase XerD [Bacillus cereus NVH0597-99]
 gi|218535959|gb|ACK88357.1| integrase/recombinase XerD [Bacillus cereus AH820]
 gi|225786005|gb|ACO26222.1| integrase/recombinase XerD [Bacillus cereus 03BB102]
 gi|227002405|gb|ACP12148.1| integrase/recombinase XerD [Bacillus anthracis str. CDC 684]
 gi|228597129|gb|EEK54784.1| Tyrosine recombinase xerD [Bacillus cereus BGSC 6E1]
 gi|228659747|gb|EEL15392.1| Tyrosine recombinase xerD [Bacillus cereus 95/8201]
 gi|228690125|gb|EEL43919.1| Tyrosine recombinase xerD [Bacillus cereus Rock3-42]
 gi|228811796|gb|EEM58130.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|228830429|gb|EEM76039.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|229269323|gb|ACQ50960.1| integrase/recombinase XerD [Bacillus anthracis str. A0248]
 gi|300377756|gb|ADK06660.1| tyrosine recombinase [Bacillus cereus biovar anthracis str. CI]
          Length = 296

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 45/271 (16%), Positives = 104/271 (38%), Gaps = 25/271 (9%)

Query: 85  GSLAVNSRISFES----YFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI---QFL 137
             LA N+ +S+E     Y   + +      + ++T  HI + ++  K    S+    + +
Sbjct: 16  KGLAKNTVVSYERDLKSYVKYLQKVEQAKSFHEVTRLHIVNFLQHLKENGKSSKTLARHI 75

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPR 193
            S+R   ++ +R+  V  +P + +E P+ + +  +  + ++++            G + +
Sbjct: 76  ASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLSVDEVEALLQTPKMTSAFGVRDK 135

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAMTPIGK 252
              E L  +GLR S+     ++ +   +  ++   K      + L     + +       
Sbjct: 136 AMLELLYATGLRVSELIALNLEDVHLTMGFVRCVGKGNKERIIPLGSLATEAIQKYIEKG 195

Query: 253 ----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
                     +  F+N+   +++   F    K  A +A + K  + H +R   AT   + 
Sbjct: 196 RRELMGKKVVDALFLNHHGNRLSRQGFWKILKRLAKEANIEKELTPHTLRHSFATHLLEN 255

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRL 331
           GA    +    G   +   + YT    + RL
Sbjct: 256 GADLRAVQEMLGHADISTTQIYTH-VSKTRL 285


>gi|229019302|ref|ZP_04176128.1| Tyrosine recombinase xerD [Bacillus cereus AH1273]
 gi|229025548|ref|ZP_04181956.1| Tyrosine recombinase xerD [Bacillus cereus AH1272]
 gi|228735730|gb|EEL86317.1| Tyrosine recombinase xerD [Bacillus cereus AH1272]
 gi|228741987|gb|EEL92161.1| Tyrosine recombinase xerD [Bacillus cereus AH1273]
          Length = 296

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 45/271 (16%), Positives = 108/271 (39%), Gaps = 25/271 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESRKHTPSSAI---QFL 137
             LA N+ +S+E      ++   + +    + ++T  HI + ++  K    S+    + +
Sbjct: 16  KGLAKNTVVSYERDLKSYVKYLQNVEQTKTFHEVTRIHIVNFLQYLKENGKSSKTLARHI 75

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KSFWSEGSQPR 193
            S+R   ++ +R+  V  +P + +E P+ + +  +  + ++++      K+  + G + +
Sbjct: 76  ASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLSIDEVEALLQTPKAVSAFGIRDK 135

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGK 252
              E L  +GLR S+     ++ +   +  ++   K      + L     + +       
Sbjct: 136 AMLELLYATGLRVSELIALNLEDVHLTMGFVRCIGKGNKERIIPLGSLATEAIQKYIEKG 195

Query: 253 ----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
                     +  F+N+   +++   F    K  A +A + K  + H +R   AT   + 
Sbjct: 196 RRELMGKKAVDALFLNHHGNRLSRQGFWKILKRLAKEANIEKELTPHTLRHSFATHLLEN 255

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRL 331
           GA    +    G   +   + YT    + RL
Sbjct: 256 GADLRAVQEMLGHADISTTQIYTH-VSKARL 285


>gi|304311873|ref|YP_003811471.1| Phage integrase/ Tyrosine recombinase XerD [gamma proteobacterium
           HdN1]
 gi|301797606|emb|CBL45827.1| Phage integrase/ Tyrosine recombinase XerD [gamma proteobacterium
           HdN1]
          Length = 316

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 49/269 (18%), Positives = 89/269 (33%), Gaps = 23/269 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGVESRKHTPSSAIQFLTS 139
             L+  +  ++    +Q  R   +           T +              S  + L+ 
Sbjct: 38  KGLSSRTLEAYRQDLEQWCRWCSEQAVLLEQVDADTVQRYLQARAQHGTHSRSLARMLSC 97

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195
           +R  F + VR   +  +P   VE PK      R  ++ D+    +          + R  
Sbjct: 98  LRGFFAYQVRAGALTQDPTALVEAPKSGRPLPRSISEADVSALLAAPNLEDPLELRDRAM 157

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDGF----------MKL 244
            E L  +GLR S+     +  +      ++    G+    V L +             + 
Sbjct: 158 LEVLYATGLRVSELIGLRLAQINRRQGVVRVMGKGSKERLVPLGEEALFWLERYFLQARA 217

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGA 302
           L ++    +  F      +M    F    K  A +AG+  + S H +R   AT   + GA
Sbjct: 218 LLLSSSDDDIVFPGRRGTEMTRQAFWYRIKYHAQQAGLRVHLSPHTLRHAFATHLINHGA 277

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRL 331
               +    G   +   + YT  A R+RL
Sbjct: 278 DLRVVQMLLGHSDLSTTQIYTHVA-RLRL 305


>gi|85059151|ref|YP_454853.1| phage integrase [Sodalis glossinidius str. 'morsitans']
 gi|84779671|dbj|BAE74448.1| phage integrase [Sodalis glossinidius str. 'morsitans']
          Length = 338

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 60/336 (17%), Positives = 109/336 (32%), Gaps = 39/336 (11%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHE--STFIPAYMSALTGSTPKREYINSP 64
           LPP V +     GK  Y F    G  I L             Y  A      ++      
Sbjct: 13  LPPRVYR-----GKTQYEFHPASGGSISLCPLDSLIPVVWAKYEQANNYRNERK------ 61

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
                 L+ LI+++  SA + +LA  ++  ++    +++   G      +  +HIR  ++
Sbjct: 62  -----NLEHLINQFFLSADFMALAAETQKDYKRNSTRLLPVFGKMHPDNVKPQHIRKYMD 116

Query: 125 SRKHT-PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
            R     + A      +  +++W   +     NPC  V + K +    R  T  + +   
Sbjct: 117 KRGTKSKTQANHEKRFLSRVYRWGYERGITKGNPCSGVRQFKEEAR-DRYITDAEYEALY 175

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
           S        R+A E       R SD        L ++   I   KTG        +   K
Sbjct: 176 SVAPA--TVRIAMEIAYLCCARQSDVLSLTKSQLLDDGIFICQGKTGKKQIKAWTERLKK 233

Query: 244 LL-------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-------NKSAHGV 289
           ++       A   +         +  +     F+  +     KA V       + + H +
Sbjct: 234 VIDLADSLPASQGVNSIYVLHQPNGNRYTRDGFNSSWAKARAKASVLHPELTFDFTFHDL 293

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
            K       +   +  E  A  G K++ Q   Y + 
Sbjct: 294 -KAKGISDLE--GSLSEKQAISGHKSIGQTARYNRK 326


>gi|145632561|ref|ZP_01788295.1| tyrosine recombinase [Haemophilus influenzae 3655]
 gi|148825411|ref|YP_001290164.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae
           PittEE]
 gi|229845011|ref|ZP_04465148.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae
           6P18H1]
 gi|260582592|ref|ZP_05850382.1| tyrosine recombinase XerD [Haemophilus influenzae NT127]
 gi|144986756|gb|EDJ93308.1| tyrosine recombinase [Haemophilus influenzae 3655]
 gi|148715571|gb|ABQ97781.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae
           PittEE]
 gi|229812145|gb|EEP47837.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae
           6P18H1]
 gi|260094403|gb|EEW78301.1| tyrosine recombinase XerD [Haemophilus influenzae NT127]
 gi|301169019|emb|CBW28616.1| site-specific tyrosine recombinase [Haemophilus influenzae 10810]
          Length = 297

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 46/282 (16%), Positives = 95/282 (33%), Gaps = 26/282 (9%)

Query: 73  WLISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFDYR-----KITTKHIRSGVES 125
            LI  +     W    L+ N+  S+      +       D        +  +        
Sbjct: 5   ALIDLFLNEY-WIEKGLSENTVQSYRLDLTALCDWLDKNDLSLETLDAVDLQGFLGERLE 63

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS- 184
           + +  +S  + L++MR LF++  R++Y   +P   +  PK  +   +  T++ +    + 
Sbjct: 64  KGYKATSTARMLSAMRKLFQYLYREKYRVDDPSAVLSSPKLPSRLPKYLTEQQVSDLLNT 123

Query: 185 ---FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240
                    + +   E L  +GLR ++     ++++      ++   K      V + + 
Sbjct: 124 PDVEVPLELRDKAMLELLYATGLRVTELVSLTIENMSVQQGVVRVIGKGNKERIVPMGEE 183

Query: 241 FMKL-----LAMTPI-----GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAH 287
                    L   P+       +  F +   Q+M    F    K  A  A ++    S H
Sbjct: 184 AAYWVRQFMLYGRPVLLNGQSSDVVFPSQRAQQMTRQTFWHRVKHYAILADIDADALSPH 243

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            +R   AT   + GA    +    G   +   + YT  A   
Sbjct: 244 VLRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKER 285


>gi|253578510|ref|ZP_04855782.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850828|gb|EES78786.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 294

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 43/260 (16%), Positives = 91/260 (35%), Gaps = 22/260 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGD------FDYRKITTKHIRSGVESRKHTPSSAIQFLT 138
              + N+ IS++    ++     +       D +++  +   S +E  K   SS  + + 
Sbjct: 16  KKTSANTEISYQRDLKKMAEFLKERGIRNYKDVKELELEGYISYMEREKFASSSISRSVA 75

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194
           SMR  F++  ++  +A +P  +++ PK +       T E++ +          +G +   
Sbjct: 76  SMRAFFQYLWKEGVIAEDPADNLKPPKVEKRAPEILTIEEVDKLLQQPKLDTPKGIRDSA 135

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254
             E L  +G+R S+     +  +      +   + G    + +     K +        T
Sbjct: 136 MLELLYATGMRVSEMLHLQIFDVNLQFGYVVCNENGKERIIPIGIPCKKAMERYLQTART 195

Query: 255 FFI----------NNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGA 302
            F+          N   + M+   F    K  A  AG+ +    H +R   A      GA
Sbjct: 196 VFVKDEKETALFTNCSGKAMSRQGFWKVLKGYADDAGIKRDIAPHTLRHSFAVHMLQNGA 255

Query: 303 TAHELMATYGWKTVDQAETY 322
               +    G   +   + Y
Sbjct: 256 DIRSVQEMLGHSDISTTQVY 275


>gi|205373757|ref|ZP_03226559.1| site-specific tyrosine recombinase XerD [Bacillus coahuilensis
           m4-4]
          Length = 297

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 38/265 (14%), Positives = 96/265 (36%), Gaps = 25/265 (9%)

Query: 85  GSLAVNSRISFESYFDQII------RKSGDFD-YRKITTKHIRSGVESRKHTPSSAIQFL 137
             L+ N+ +S+E              +  D +   +       + ++ +  +  +  + +
Sbjct: 16  RGLSSNTLVSYERDLKSYCNHLKNTEQIEDLNHVVRGNIIEFLAFLKDQGKSSKTIARHI 75

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPR 193
            S+R   ++ +R++    +P + ++ PK +    +  + ++++            G + +
Sbjct: 76  ASIRSFHQFLLREKITDHDPTVHIDTPKAERSLPKVLSLDEVETLLDSPNLQKPSGIRDK 135

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVEL-----------PDGF 241
              E L  +G+R S+     ++ +   +  ++   K      + L            +  
Sbjct: 136 AMLEILYATGIRVSELIELNLEDVHLTMGFVRCIGKGNKERIIPLGNHAITILKEYLEKA 195

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
              L  +    +  F+N+   ++    F    K  ATKA + K  + H +R   AT   +
Sbjct: 196 RPKLRSSKYRTDALFLNHHGNRLTRQGFWKILKGLATKANIQKELTPHTLRHSFATHLLE 255

Query: 300 AGATAHELMATYGWKTVDQAETYTK 324
            GA    +    G   +   + YT 
Sbjct: 256 NGADLRAVQEMLGHADISTTQIYTH 280


>gi|254492686|ref|ZP_05105857.1| tyrosine recombinase XerD [Methylophaga thiooxidans DMS010]
 gi|224462207|gb|EEF78485.1| tyrosine recombinase XerD [Methylophaga thiooxydans DMS010]
          Length = 303

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 45/267 (16%), Positives = 87/267 (32%), Gaps = 22/267 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGVESRKHTPSSAIQFLTS 139
             L+ N+  ++              D       +   +  +S          S  + L++
Sbjct: 25  AGLSQNTVEAYRRDLLAFAAWLAKLDVDLAAATQHDIQRYQSQRMREGRKVRSEARLLST 84

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLA 195
           +R  +++ +R++    +P   +E P+         T++D++   +        G + R  
Sbjct: 85  LRRFYRYLLREDIRDSDPTAQLESPRLGKPLPDSLTEQDVEDLLAQPDITDLLGLRDRTM 144

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVEL----PDGFMKLLAMTPI 250
            E L  SGLR S+      + +      ++   K      V L     D   +    +  
Sbjct: 145 LELLYASGLRVSELVGLKQEQINMRQGLVRCIGKGNKERLVPLGEVALDWLQQYFYESRP 204

Query: 251 G------KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302
           G       +  F     + M    F    K  A +A + K  S H +R   AT   + GA
Sbjct: 205 GLLNGKVTDDVFPTRRGKAMTRQAFWYIIKRYAKQAQIQKTLSPHTLRHAFATHLLNHGA 264

Query: 303 TAHELMATYGWKTVDQAETYTKGADRI 329
               +    G   +   + YT  A   
Sbjct: 265 DLRVVQLLLGHSDLSTTQIYTHVAKER 291


>gi|149372788|ref|ZP_01891809.1| site-specific recombinase [unidentified eubacterium SCB49]
 gi|149354485|gb|EDM43050.1| site-specific recombinase [unidentified eubacterium SCB49]
          Length = 299

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 50/265 (18%), Positives = 93/265 (35%), Gaps = 26/265 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVESRKHT--PSSAIQFLT 138
             L+ N+  ++     ++ +   +         I+ K I+  +     T  PSS  + ++
Sbjct: 18  RGLSDNTIANYALDILKLTKWLEENEMAISPIDISEKTIQEFIYEIAKTVAPSSQSRVIS 77

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRL 194
            ++  F + V +EY   NP   +E PK   +     +++++    S       +G + R 
Sbjct: 78  GLKGFFNYLVFEEYRTTNPLELMESPKIGRKLPDTLSEKEIDLLISEIDLSSPQGERNRA 137

Query: 195 AFEFLLYSGLRCSDSCRAGVQH--LQNNIFSIKTQKTGTIITVELPD-----------GF 241
             E L   GLR S+     +     +     + T K      V + D             
Sbjct: 138 ILETLYGCGLRVSEIINLKISDLFFEEGFIKV-TGKGDKERFVPIGDNTIKFINIYRNEI 196

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
                + P   +T F+N   + +         K    K G+ K  S H  R   AT   +
Sbjct: 197 RVHEPIKPEASDTLFLNRRGKGLTRAMIFTIIKRLLEKTGIQKNVSPHTFRHSFATHLLE 256

Query: 300 AGATAHELMATYGWKTVDQAETYTK 324
            GA    +    G +++   E YT 
Sbjct: 257 RGADLRAIQQMLGHESITTTEIYTH 281


>gi|68248917|ref|YP_248029.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae
           86-028NP]
 gi|68057116|gb|AAX87369.1| Site-specific recombinase XerD [Haemophilus influenzae 86-028NP]
          Length = 297

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 46/282 (16%), Positives = 95/282 (33%), Gaps = 26/282 (9%)

Query: 73  WLISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFDYR-----KITTKHIRSGVES 125
            LI  +     W    L+ N+  S+      +       D        +  +        
Sbjct: 5   ALIDLFLNEY-WIEKGLSENTVQSYRLDLTALCDWLDKNDLSLETLDAVDLQGFLGERLE 63

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS- 184
           + +  +S  + L++MR LF++  R++Y   +P   +  PK  +   +  T++ +    + 
Sbjct: 64  KGYKATSTARMLSAMRKLFQYLYREKYRVDDPSAVLSSPKLPSRLPKYLTEQQVSDLLNT 123

Query: 185 ---FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240
                    + +   E L  +GLR ++     ++++      ++   K      V + + 
Sbjct: 124 PDVKVPLELRDKAMLELLYATGLRVTELVSLTIENMSVQQGVVRVIGKGNKERIVPMGEE 183

Query: 241 FMKL-----LAMTPI-----GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAH 287
                    L   P+       +  F +   Q+M    F    K  A  A ++    S H
Sbjct: 184 AAYWVRQFMLYGRPVLLNGQSSDVVFPSQRAQQMTRQTFWHRVKHYAILADIDADALSPH 243

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            +R   AT   + GA    +    G   +   + YT  A   
Sbjct: 244 VLRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKER 285


>gi|15614092|ref|NP_242395.1| integrase/recombinase [Bacillus halodurans C-125]
 gi|34223074|sp|Q9KCP0|XERD_BACHD RecName: Full=Tyrosine recombinase xerD
 gi|10174146|dbj|BAB05248.1| integrase/recombinase [Bacillus halodurans C-125]
          Length = 299

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 38/264 (14%), Positives = 94/264 (35%), Gaps = 24/264 (9%)

Query: 85  GSLAVNSRISFES-------YFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFL 137
             L+ N+  S+         Y +++       +  + T  H    +  +    +S  + +
Sbjct: 19  RGLSNNTIQSYGRDLKQYIQYVERVEEIRSARNITRETILHYLYHLREQGRAETSIARAV 78

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FWSEGSQPR 193
            ++R   ++ +R++    +P + VE PK      +  T E+++   +          + +
Sbjct: 79  AAIRSFHQFLLREKLSDSDPTVHVEIPKATKRLPKALTIEEVEALLNSPQGRDPFSLRNK 138

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLA------ 246
              E L  +G+R S+     +  +  ++  ++   K      + +     + +       
Sbjct: 139 AMLELLYATGMRVSELIGLTLSDIHLSMGFVRCLGKGNKERIIPIGQVATEAVESYLANG 198

Query: 247 ----MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
               M     +  F+N+  + ++   F    K  A    ++K  + H +R   AT   + 
Sbjct: 199 RGKLMKKQSHDHVFVNHHGRPLSRQGFWKMLKQLAKNVNIDKPLTPHTLRHSFATHLLEN 258

Query: 301 GATAHELMATYGWKTVDQAETYTK 324
           GA    +    G   +   + YT 
Sbjct: 259 GADLRAVQEMLGHADISTTQIYTH 282


>gi|148379825|ref|YP_001254366.1| tyrosine recombinase XerD [Clostridium botulinum A str. ATCC 3502]
 gi|153931147|ref|YP_001384123.1| tyrosine recombinase XerD [Clostridium botulinum A str. ATCC 19397]
 gi|153934877|ref|YP_001387663.1| tyrosine recombinase XerD [Clostridium botulinum A str. Hall]
 gi|148289309|emb|CAL83405.1| tyrosine recombinase [Clostridium botulinum A str. ATCC 3502]
 gi|152927191|gb|ABS32691.1| tyrosine recombinase XerD [Clostridium botulinum A str. ATCC 19397]
 gi|152930791|gb|ABS36290.1| tyrosine recombinase XerD [Clostridium botulinum A str. Hall]
          Length = 291

 Score =  143 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 43/282 (15%), Positives = 106/282 (37%), Gaps = 21/282 (7%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVESR 126
           K +I  Y K     +L+ N+  ++    ++      +          +T       ++  
Sbjct: 2   KNIIENYIKDLQKKNLSKNTLEAYRRDVEKFSEFVRNREERILSVDTVTIMAFVQYLQRE 61

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
               SS ++ + S+R  +K+ +++  V+ +P L  E PK +    +  + E++ +  +  
Sbjct: 62  GRATSSIVRNIVSVRNFYKYLIKKNMVSEDPTLGYEIPKIERTIPKILSVEEVDKLLNSP 121

Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG--- 240
               +G + +   E +  +G++ ++     +  +      IK + +     + +P G   
Sbjct: 122 NSSKKGLRDKAMLELMYATGVKITELLNLNIYDINLKFNYIKCRGSKKRERI-IPIGSYA 180

Query: 241 ---FMKLLAMTPIGK----ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRK 291
                  L + P       +  F+N    +M    F    K  A +A ++K   ++ +R 
Sbjct: 181 IKCLKNYLEVRPAINVYNLDYLFLNLKGTQMTRQGFWKIIKFYAKEASIDKEIDSYTLRH 240

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
             A      GA    +    G K +   + Y+  + + ++  
Sbjct: 241 SFAVHLLQNGADIKSVQELLGHKDLAATQIYSSISKKSKIAE 282


>gi|53715763|ref|YP_101755.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|60683694|ref|YP_213838.1| putative tyrosine recombinase [Bacteroides fragilis NCTC 9343]
 gi|265767295|ref|ZP_06094961.1| tyrosine recombinase XerD [Bacteroides sp. 2_1_16]
 gi|52218628|dbj|BAD51221.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|60495128|emb|CAH09949.1| putative tyrosine recombinase [Bacteroides fragilis NCTC 9343]
 gi|263252600|gb|EEZ24112.1| tyrosine recombinase XerD [Bacteroides sp. 2_1_16]
          Length = 317

 Score =  143 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 47/274 (17%), Positives = 100/274 (36%), Gaps = 23/274 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQII-----RKSGDFDYRKITTKHIRSGVESRK 127
           +I +Y++      SL+ N+  ++ +  ++++           +      +   +G+    
Sbjct: 16  IIKKYQQYLKLEKSLSKNTLEAYLTDLEKLLSFLSAEGVEILEVSLTDLQRFAAGLHDIG 75

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
               S  + ++ ++  F + +  +Y+  +P   +E PK   +     T E++ +  S   
Sbjct: 76  IHARSQARIISGIKSFFHFLIIADYIEADPSELLEGPKIGFKLPEVLTVEEIDRIISTID 135

Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-VELPDGF- 241
               EG + R   E L   GLR S+     +  L  +   IK +  G+    V +     
Sbjct: 136 LSKNEGQRNRAILETLYSCGLRVSELTGLKLSDLYFDEGFIKVEGKGSKQRLVPISPKAI 195

Query: 242 ---------MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290
                       + +    ++  F++     ++        K  A  AG+ K  S H  R
Sbjct: 196 QEIKLYFLDRNRINIKKDHEDYLFLSRRGTHLSRIMIFHLIKELADMAGITKNISPHTFR 255

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              AT   + GA    +    G +++   E YT 
Sbjct: 256 HSFATHLLEGGANLRAIQCMLGHESISTTEIYTH 289


>gi|328957336|ref|YP_004374722.1| site-specific tyrosine recombinase XerD [Carnobacterium sp. 17-4]
 gi|328673660|gb|AEB29706.1| site-specific tyrosine recombinase XerD [Carnobacterium sp. 17-4]
          Length = 299

 Score =  143 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 48/264 (18%), Positives = 104/264 (39%), Gaps = 24/264 (9%)

Query: 85  GSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGVESRKHTPSSA---IQFLT 138
             L+ N+  S++    Q    I +     + +I    + S ++  K    SA   I+ ++
Sbjct: 19  RGLSKNTIESYKRDIRQYLVFIEQIKVTKWDQIDRYTVLSFLQDLKEKEKSAGTIIRMIS 78

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KSFWSEGSQPRL 194
            +R   ++  +++    +P L ++ PK+  +  +  + +++ +      +  + G + R 
Sbjct: 79  CLRQFHQFLKQEQISQSDPMLHIDTPKKAQKLPKVLSIKEVDRLIETPNTGETLGLRDRA 138

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLA------M 247
             E +  +GLR S+     +  L  ++  I+T  K      + L D  +  +        
Sbjct: 139 MLEVMYATGLRVSELTELKLDDLHLSLGLIQTIGKGDKERIIPLGDLAITWIEKYLRYSR 198

Query: 248 TPIGKE-----TFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
           T + K+       F+N+  +K+         K    KAG+ K  + H +R   AT   + 
Sbjct: 199 TKLEKDGQRSPHLFLNHHGRKLTRQGVWKNLKIIVKKAGIEKEVTPHTLRHSFATHLLEN 258

Query: 301 GATAHELMATYGWKTVDQAETYTK 324
           GA    +    G   +   + YT 
Sbjct: 259 GADLRVVQELLGHSDISTTQIYTH 282


>gi|219871550|ref|YP_002475925.1| site-specific tyrosine recombinase XerD [Haemophilus parasuis
           SH0165]
 gi|219691754|gb|ACL32977.1| site-specific tyrosine recombinase XerD [Haemophilus parasuis
           SH0165]
          Length = 297

 Score =  143 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 40/279 (14%), Positives = 96/279 (34%), Gaps = 23/279 (8%)

Query: 71  LKWLISEYRKSA-HWGSLAVNSRISFESYFD----QIIRKSGDFDYRKITTKHIRSGVES 125
           L  +I ++  +      L+ N+  S+    +     +   +       +  +        
Sbjct: 4   LDPIIEQFLDTLWQEQGLSENTVASYRLDLESFTQWLSEPNAFLKVDYVDLQTFLGERLE 63

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQ 181
           + +  +S+ + L+ +R  F++   ++Y   +P  ++  P++     +  ++E +      
Sbjct: 64  QGYKATSSSRMLSCLRKFFRFLYLEKYRDDDPTATLTSPRKPAHLPKSLSEEQVLDLLNI 123

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240
             +      + +   E L  +GLR ++     + +L      ++   K      V L + 
Sbjct: 124 PNTQDPLELRDKAMLELLYATGLRVTELVSLTLDNLSLRQGLVRIIGKGDKERLVPLGEE 183

Query: 241 FMKLLAMTP----------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAH 287
               +              +  +  F +    +M    F    K  A  AG++    S H
Sbjct: 184 ASYWIQQFFEYGRSSLLNGMQSDVVFPSRLGNQMTRQTFWHRIKHYALLAGIDSNKLSPH 243

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            +R   AT   + GA    +    G   +   + YT+ A
Sbjct: 244 VLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTQVA 282


>gi|238752994|ref|ZP_04614453.1| Tyrosine recombinase xerD [Yersinia rohdei ATCC 43380]
 gi|238708782|gb|EEQ01041.1| Tyrosine recombinase xerD [Yersinia rohdei ATCC 43380]
          Length = 299

 Score =  143 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 97/278 (34%), Gaps = 26/278 (9%)

Query: 74  LISEYRKSAHW--GSLAVNSRISFESYFDQI---IRKSGDFDYRK--ITTKHIRSGVESR 126
           LI ++   A W   +LA N+  S+      +   +  +G    R      +   +     
Sbjct: 8   LIEQFL-DALWLERNLAENTLASYRLDLHALTGWLEHNGSDLLRAGSQDLQSFLAERIEG 66

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185
            +  +S+ + L++MR LF++  R++    +P   +  PK      +  ++  +    +  
Sbjct: 67  GYKATSSARLLSAMRRLFQYLYREKLREDDPTALLSSPKLPQRLPKDLSEAQVDALLNSP 126

Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241
                   + +   E L  +GLR S+     +  +      ++   K      V L +  
Sbjct: 127 NVDIPLELRDKAMLEVLYATGLRVSELVGLTISDVSLRQGVVRVIGKGNKERLVPLGEEA 186

Query: 242 MKLLAMTPIGKETFFIN----------NDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288
           +  +         + IN          N  Q+M    F    K  A  AG++    S H 
Sbjct: 187 VYWIENYMEHGRPWLINGHSLDVLFPSNRSQQMTRQTFWHRIKHYAILAGIDSERLSPHV 246

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           +R   AT   + GA    +    G   +   + YT  A
Sbjct: 247 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA 284


>gi|150003451|ref|YP_001298195.1| integrase [Bacteroides vulgatus ATCC 8482]
 gi|254881251|ref|ZP_05253961.1| integrase [Bacteroides sp. 4_3_47FAA]
 gi|294777667|ref|ZP_06743118.1| tyrosine recombinase XerD [Bacteroides vulgatus PC510]
 gi|319640253|ref|ZP_07994978.1| integrase [Bacteroides sp. 3_1_40A]
 gi|149931875|gb|ABR38573.1| integrase [Bacteroides vulgatus ATCC 8482]
 gi|254834044|gb|EET14353.1| integrase [Bacteroides sp. 4_3_47FAA]
 gi|294448735|gb|EFG17284.1| tyrosine recombinase XerD [Bacteroides vulgatus PC510]
 gi|317388028|gb|EFV68882.1| integrase [Bacteroides sp. 3_1_40A]
          Length = 313

 Score =  143 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 53/276 (19%), Positives = 106/276 (38%), Gaps = 23/276 (8%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQII-----RKSGDFDYRKITTKHIRSGVES 125
             ++ +Y++      SL+ N+  ++ +  D+++           D R    +   +G+  
Sbjct: 8   DKILVKYKQYLKLEKSLSDNTVDAYLTDLDKLLAYLTLENINILDVRLENLEDFSAGLHD 67

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF--- 182
               P S  + L+ +R  +++ + ++Y+  +P   +E P+   +     T E++      
Sbjct: 68  IGIHPRSQARILSGIRSFYRFLIMEDYLKADPTELLESPQTGFKLPEVMTVEEIDLLIGS 127

Query: 183 -KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-VELPDG 240
                 EG + R   E L   GLR S+ C   +  L      IK +  G+    V +   
Sbjct: 128 IDRSTKEGQRNRAILETLYSCGLRVSELCNLKLSELYFEEGFIKVEGKGSKQRLVPISPR 187

Query: 241 F----------MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288
                        L+ + P  ++  FI+N  + ++        K  A + G+ K  S H 
Sbjct: 188 AIKEIRLYFTDRNLMKIKPGFEDFVFISNFGKNISRIMVFHIIKELAARIGLKKKISPHT 247

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            R   AT   + GA    +    G +++   E YT 
Sbjct: 248 FRHSFATHLLEGGANLRAIQCMLGHESIGTTEIYTH 283


>gi|238792839|ref|ZP_04636470.1| Tyrosine recombinase xerD [Yersinia intermedia ATCC 29909]
 gi|238727947|gb|EEQ19470.1| Tyrosine recombinase xerD [Yersinia intermedia ATCC 29909]
          Length = 299

 Score =  143 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 97/278 (34%), Gaps = 26/278 (9%)

Query: 74  LISEYRKSAHW--GSLAVNSRISFESYFDQI---IRKSGDFDYRK--ITTKHIRSGVESR 126
           LI ++   A W   +LA N+  S+      +   +   G    R      +   +     
Sbjct: 8   LIEQFL-DALWLERNLAENTLASYRLDLHALTGWLEHHGSDLLRAGSQDLQSFLAERIEG 66

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185
            +  +S+ + L++MR LF++  R++    +P   +  PK      +  ++  + +  +  
Sbjct: 67  GYKATSSARLLSAMRRLFQYLYREKLREDDPTALLSSPKLPQRLPKDLSEAQVDRLLNSP 126

Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241
                   + +   E L  +GLR S+     +  +      ++   K      V L +  
Sbjct: 127 NVDIPLELRDKAMLEVLYATGLRVSELVGLTISDVSLRQGVVRVIGKGNKERLVPLGEEA 186

Query: 242 MKLLAMTPIGKETFFIN----------NDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288
           +  +         + IN          N  Q+M    F    K  A  AG++    S H 
Sbjct: 187 VYWIENYMEHGRPWLINGQSLDVLFPSNRSQQMTRQTFWHRIKHYAILAGIDSERLSPHV 246

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           +R   AT   + GA    +    G   +   + YT  A
Sbjct: 247 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA 284


>gi|145631442|ref|ZP_01787212.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae
           R3021]
 gi|144982979|gb|EDJ90488.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae
           R3021]
          Length = 297

 Score =  143 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 46/282 (16%), Positives = 95/282 (33%), Gaps = 26/282 (9%)

Query: 73  WLISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFDYR-----KITTKHIRSGVES 125
            LI  +     W    L+ N+  S+      +       D        +  +        
Sbjct: 5   ALIDLFLNEY-WIEKGLSENTVQSYRLDLTALCDWLDKNDLSLETLDAVDLQGFLGERLE 63

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           + +  +S  + L++MR LF++  R++Y   +P   +  PK  +   +  T++ +    + 
Sbjct: 64  KGYKATSTARMLSAMRKLFQYLYREKYRVDDPSAVLSSPKLPSRLPKYLTEQQVSDLLNT 123

Query: 186 W----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240
                    + +   E L  +GLR ++     ++++      ++   K      V + + 
Sbjct: 124 PDVDVPLELRDKAMLELLYATGLRVTELVSLTIENMSVQQGVVRVIGKGNKERIVPMGEE 183

Query: 241 FMKL-----LAMTPI-----GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAH 287
                    L   P+       +  F +   Q+M    F    K  A  A ++    S H
Sbjct: 184 AAYWVRQFMLYGRPVLLNGQSSDVVFPSQRAQQMTRQTFWHRVKHYAILADIDADALSPH 243

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            +R   AT   + GA    +    G   +   + YT  A   
Sbjct: 244 VLRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKER 285


>gi|238754564|ref|ZP_04615918.1| Tyrosine recombinase xerD [Yersinia ruckeri ATCC 29473]
 gi|238707195|gb|EEP99558.1| Tyrosine recombinase xerD [Yersinia ruckeri ATCC 29473]
          Length = 299

 Score =  143 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 48/278 (17%), Positives = 95/278 (34%), Gaps = 26/278 (9%)

Query: 74  LISEYRKSAHW--GSLAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVESR 126
           LI ++   A W   +LA N+  S+      +                +  +   +     
Sbjct: 8   LIEQFL-DALWLERNLAENTLASYRLDLQALAGWLQRHNKSLLLADPLDLQSFLAERIEG 66

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185
            +  +S+ + L++MR  F++  R++    +P   +  PK      +  ++  +    +  
Sbjct: 67  GYKATSSARLLSAMRRFFQYLYREKLREDDPTALLSSPKLPQRLPKDLSEAQVDALLNSP 126

Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG- 240
                   + +   E L  +GLR S+     +  +      ++   K      V L +  
Sbjct: 127 NVDIPLELRDKAMLEVLYATGLRVSELVGLTISDVSLRQGVVRVIGKGNKERLVPLGEEA 186

Query: 241 ------FMKLLAMTPIGK---ETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288
                 +M+      I     +  F +N  Q+M    F    K  A  AG++    S H 
Sbjct: 187 VYWIENYMEYGRPWLINGQALDVLFPSNRSQQMTRQTFWHRIKHYAILAGIDSERLSPHV 246

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           +R   AT   + GA    +    G   +   + YT  A
Sbjct: 247 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA 284


>gi|323697881|ref|ZP_08109793.1| tyrosine recombinase XerD [Desulfovibrio sp. ND132]
 gi|323457813|gb|EGB13678.1| tyrosine recombinase XerD [Desulfovibrio desulfuricans ND132]
          Length = 307

 Score =  142 bits (359), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 50/280 (17%), Positives = 99/280 (35%), Gaps = 24/280 (8%)

Query: 74  LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKH---IRSGVESRK 127
            +  Y +       L+ NS   + +    ++    +  F  + +T +      + + +R 
Sbjct: 17  WVDRYLEHLLIEKGLSENSLTGYANDLGSLLAFLEERSFPLKDLTDQTLFLYLTHLRARG 76

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-- 185
               S  + L+S+R  F +AV +++   +P   +E PK   +     ++E++ +  +   
Sbjct: 77  LKSRSLARHLSSLRGFFAFAVGEKWYKEDPGQLLENPKLPRKLPEFLSREEISRVLALPD 136

Query: 186 --WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFM 242
                G + ++  E L  +GLR S+     V      +  +K   K      + +     
Sbjct: 137 TSTPLGMRDKVMLELLYAAGLRVSELIGMKVLDYDPQVGMLKVFGKGSKDRLIPIHYTAQ 196

Query: 243 KLLAM---------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRK 291
             L            P     F  N   + +         K  A  AG+ +S   H  R 
Sbjct: 197 DYLNRYLEFTRPGFKPREDFMFL-NRSGKGLTRQGVWKLIKKYAEAAGIKRSISPHTFRH 255

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330
             AT   + GA    +    G   +   E YT   A+R++
Sbjct: 256 SFATHLLEGGADLRTVQILLGHADISATEIYTHVEANRLK 295


>gi|307129430|ref|YP_003881446.1| site-specific tyrosine recombinase [Dickeya dadantii 3937]
 gi|306526959|gb|ADM96889.1| site-specific tyrosine recombinase [Dickeya dadantii 3937]
          Length = 299

 Score =  142 bits (359), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 51/283 (18%), Positives = 103/283 (36%), Gaps = 27/283 (9%)

Query: 74  LISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFDYRKITTK-----HIRSGVESR 126
           LI ++   A W   +LA N+  S+ +    +       D   +  +        +     
Sbjct: 8   LIEQFL-DALWLERNLAENTLSSYRNDLRSLADWLAHHDSSLLQAQPSDLQDFLAERLEG 66

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185
            +  +S+ + L++MR LF++  R++    +P   +  PK      +  T+  ++   +  
Sbjct: 67  GYKATSSARLLSAMRRLFQYLYREKQRPDDPSAPLSSPKLPQRLPKDLTEAQVEALLAAP 126

Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-------- 234
                   + +   E L  +GLR S+     +  +      ++    G            
Sbjct: 127 VTDQPIELRDKAMLELLYATGLRVSELVGLTISDVSLRQGVVRVIGKGNKERLVPLGEEA 186

Query: 235 VELPDGFMKLLAMTPIGKETF---FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288
           V   + +++      +  +T    F +N  Q+M    F    K  AT A ++    S H 
Sbjct: 187 VYWLEQYLEYSRPWLLNGQTLDVLFPSNRAQQMTRQTFWHRIKHYATLASIDSNKLSPHV 246

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIR 330
           +R   AT   + GA    +    G   +   + YT  A +R+R
Sbjct: 247 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLR 289


>gi|229031733|ref|ZP_04187726.1| Tyrosine recombinase xerD [Bacillus cereus AH1271]
 gi|228729617|gb|EEL80604.1| Tyrosine recombinase xerD [Bacillus cereus AH1271]
          Length = 296

 Score =  142 bits (359), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 44/271 (16%), Positives = 104/271 (38%), Gaps = 25/271 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVESRKHTPSSAI---QFL 137
             LA N+ +S+E      ++   +      + ++T  HI + ++  K    S+    + +
Sbjct: 16  KGLAKNTVVSYERDLKSYVKYLQNVEQAKSFHEVTRLHIVNFLQHLKENGKSSKTLARHI 75

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPR 193
            S+R   ++ +R+  V  +P + +E P+ + +  +  + ++++            G + +
Sbjct: 76  ASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLSIDEVEALLQTPKMTSAFGVRDK 135

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGK 252
              E L  +GLR S+     ++ +   +  ++   K      + L     + +       
Sbjct: 136 AMLELLYATGLRVSELIALNLEDIHLTMGFVRCIGKGNKERIIPLGSLATEAIQKYIEKG 195

Query: 253 ----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
                     +  F+N+   +++   F    K  A +A + K  + H +R   AT   + 
Sbjct: 196 RRELMGKRVVDALFLNHHGNRLSRQGFWKILKRLAKEANIEKELTPHTLRHSFATHLLEN 255

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRL 331
           GA    +    G   +   + YT    + RL
Sbjct: 256 GADLRAVQEMLGHADISTTQIYTH-VSKARL 285


>gi|170729959|ref|YP_001775392.1| site-specific tyrosine recombinase XerD [Xylella fastidiosa M12]
 gi|167964752|gb|ACA11762.1| integrase/recombinase [Xylella fastidiosa M12]
          Length = 324

 Score =  142 bits (359), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 54/274 (19%), Positives = 97/274 (35%), Gaps = 30/274 (10%)

Query: 85  GSLAVNSRISFESYFDQIIR----KSGDFD-YRKITTKHIRSGVESRKHTPSSAIQFLTS 139
             L+ ++  S+    + + R    ++G              +    + ++P S  + L+ 
Sbjct: 38  HGLSRHTLNSYRRDLEGLARWNNGRAGPLATLTPPALLDYLTWRTQQHYSPLSNARLLSV 97

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195
           +R  F +AV   +   NP   +  P       +  T+  ++   +       EG + R  
Sbjct: 98  LRTFFSYAVECGWRNDNPSTLLAHPVLPHPLPKALTESQIEALLAAPSIETPEGLRNRAM 157

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLA-------- 246
            E +  +GLR S+     V  L      ++ T K G    V L +     L         
Sbjct: 158 LELMYAAGLRVSELITLPVAMLNRRQGVLRITGKGGKERLVPLGEESQHWLQRYLEQARP 217

Query: 247 ---------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSA 294
                        G    FIN + ++++  QF  W K  A  AG+     S H +R   A
Sbjct: 218 SLAADKPIPADSDGDVPLFINTNLKRLSRQQFWRWIKHYAALAGIAPNKVSPHVLRHSFA 277

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           T   + GA    L    G +++   + YT  A +
Sbjct: 278 THLLNHGADLRALQMLLGHRSISTTQIYTLIARQ 311


>gi|161611265|ref|YP_294803.2| site-specific tyrosine recombinase XerD [Ralstonia eutropha JMP134]
          Length = 305

 Score =  142 bits (359), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 48/269 (17%), Positives = 92/269 (34%), Gaps = 24/269 (8%)

Query: 86  SLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTSM 140
            L+ N+  ++      + R   +S +     I    + +   +R  +   SS+ + L   
Sbjct: 27  GLSRNTMDAYRRDLSMLARWLHQSSNGGLLGIGDTELNAYFLARHPETRASSSNRRLAVF 86

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAF 196
           R  ++WA+R++ +  +PC+ +   K+     +  ++  ++            G + R   
Sbjct: 87  RRFYQWALREQMIEADPCILLRPAKQPPRVPKTLSEAQVEALLEAPDTTTPLGLRDRTML 146

Query: 197 EFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKLLAM------- 247
           E +  SGLR S+  +     +     +  +   K      V         L         
Sbjct: 147 ELMYASGLRVSELTQMKTVEIGLNEGVARVVGGKGDKERLVPFGMQASDWLRRYLGSARP 206

Query: 248 ---TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGA 302
                   +  F+    + M    F    K  A  AG+    S H +R   AT   + GA
Sbjct: 207 ALLAGRACDALFVTQRGEGMTRQAFWHLIKRHARDAGITAPLSPHTLRHAFATHLLNHGA 266

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRL 331
               +    G   +   + YT  A R RL
Sbjct: 267 DLRVVQLLLGHADISTTQIYTHVA-RERL 294


>gi|91789051|ref|YP_550003.1| tyrosine recombinase XerD subunit [Polaromonas sp. JS666]
 gi|91698276|gb|ABE45105.1| tyrosine recombinase XerD subunit [Polaromonas sp. JS666]
          Length = 300

 Score =  142 bits (359), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 52/272 (19%), Positives = 96/272 (35%), Gaps = 29/272 (10%)

Query: 86  SLAVNSRISFESYFDQIIR------KSGDFDYRKITTKHIRSGVESRKHT-PSSAIQFLT 138
            L+ N+  ++               + G      + T   R        T  +SA + LT
Sbjct: 21  GLSKNTLAAYRRDLSLFAAWLAAPAQQGRRLDDTVETDLNRYFSTRHATTKATSANRRLT 80

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194
             +  F+WA+R+  + ++P L ++  K+     +  ++  ++   +        G + R 
Sbjct: 81  VFKRYFRWALRERLITVDPTLKLQSAKQALRVPKVMSEAQVEALLAAPSESTPLGQRDRA 140

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-------------ITVELPDGF 241
             E +  SGLR S+       H+  N   ++    G+              + + L +  
Sbjct: 141 MLELMYASGLRVSELVGLKTFHVGLNEGVLRVMGKGSKERLVPFGQVAREWVVLYLAEAR 200

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISAD 299
             +L          F+ N    M+   F +  K  A  AG++   S H +R   AT   +
Sbjct: 201 PAILGGQQTDD--LFVTNRGSGMSRVMFWMLVKKYAQLAGIHSPLSPHTLRHAFATHLLN 258

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            GA    +    G   +     YT  A R RL
Sbjct: 259 HGADLRAVQMLLGHADISTTTIYTHVA-RERL 289


>gi|167856576|ref|ZP_02479280.1| tyrosine recombinase XerD [Haemophilus parasuis 29755]
 gi|167852293|gb|EDS23603.1| tyrosine recombinase XerD [Haemophilus parasuis 29755]
          Length = 297

 Score =  142 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 40/279 (14%), Positives = 96/279 (34%), Gaps = 23/279 (8%)

Query: 71  LKWLISEYRKSA-HWGSLAVNSRISFESYFD----QIIRKSGDFDYRKITTKHIRSGVES 125
           L  +I ++  +      L+ N+  S+    +     +   +       +  +        
Sbjct: 4   LDPIIEQFLDTLWQEQGLSENTVASYRLDLESFTQWLSEPNAFLKVDYVDLQTFLGERLE 63

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQ 181
           + +  +S+ + L+ +R  F++   ++Y   +P  ++  P++     +  ++E +      
Sbjct: 64  QGYKATSSSRMLSCLRKFFRFLYLEKYRDDDPTATLTSPRKPAHLPKSLSEEQVLDLLNI 123

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240
             +      + +   E L  +GLR ++     + +L      ++   K      V L + 
Sbjct: 124 PDTQDPLELRDKAMLELLYATGLRVTELVSLTLDNLSLRQGLVRIIGKGDKERLVPLGEE 183

Query: 241 FMKLLAMTP----------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAH 287
               +              +  +  F +    +M    F    K  A  AG++    S H
Sbjct: 184 ASYWIQQFFEYGRSSLLNGMQSDVVFPSRLGNQMTRQTFWHRIKHYALLAGIDSNKLSPH 243

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            +R   AT   + GA    +    G   +   + YT+ A
Sbjct: 244 VLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTQVA 282


>gi|297584490|ref|YP_003700270.1| tyrosine recombinase XerD [Bacillus selenitireducens MLS10]
 gi|297142947|gb|ADH99704.1| tyrosine recombinase XerD [Bacillus selenitireducens MLS10]
          Length = 296

 Score =  142 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 51/276 (18%), Positives = 104/276 (37%), Gaps = 27/276 (9%)

Query: 75  ISEY--RKSAHWGSLAVNSRISF----ESYFDQIIRKSGDFDYRKITTKH---IRSGVES 125
           I  Y    S     L+  +  ++      Y   +    G F ++ +  KH       +  
Sbjct: 5   IDTYTHYLSVE-KGLSTKTIEAYAGDLSGYLTFLQDTYGIFSWKDVNKKHVLHYLQWMNQ 63

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
                SS  + L++++ L  + + ++ +  NP + +ERP++     +     +++   S 
Sbjct: 64  SGKASSSISRTLSAIKSLHVFLMLEKEMDENPAVHIERPRKPAILPKTLAISEVEALFSA 123

Query: 186 W----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDG 240
                    +     E L  +G+R S+ C   ++ L   +  +K T K  T   + L + 
Sbjct: 124 AEGNRPIDIRTVAMLEVLYSTGMRVSELCALELKDLNLEMGFVKCTGKGNTERIIPLGEF 183

Query: 241 FMKLLA-----MTPI-----GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288
             + +        P+          F+N+   +++   F    ++ ATKAG+ K  S H 
Sbjct: 184 ATEAIRIYLDHARPVMMKDKEHHDLFVNHHGHRISRQGFWKLIRSLATKAGIQKEISPHT 243

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +R   AT   + GA    +    G   +   + YT 
Sbjct: 244 LRHSFATHLLENGADLRSVQEMLGHSDISTTQIYTH 279


>gi|88813548|ref|ZP_01128781.1| tyrosine recombinase [Nitrococcus mobilis Nb-231]
 gi|88789177|gb|EAR20311.1| tyrosine recombinase [Nitrococcus mobilis Nb-231]
          Length = 313

 Score =  142 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 54/284 (19%), Positives = 99/284 (34%), Gaps = 20/284 (7%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
           L  L  E   SAH  S   +  +++  + +     +G     +       +        P
Sbjct: 28  LDTLWMERGLSAHTLSAYRSDLVAYARWLE--RHGTGLLRAGRDGPTAYLAERVRSGVRP 85

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---- 186
            +  + L+++R  ++  +R   +A +P   ++ PK         +++++++  +      
Sbjct: 86  RTTARLLSTLRCFYRLQLRDGRLAEDPTAQLDSPKLDRPLPATLSEQEVEELLAAPDCQN 145

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLL 245
             G + R   E    +GLR S+     +  L      +    K      V L D     L
Sbjct: 146 PIGLRDRTMLEVAYATGLRVSELVSLRLGQLNLRQGMARIIGKADKERLVPLGDEAQAWL 205

Query: 246 A----------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFS 293
                      +T       FI    + M    F    K  A  AG++K  S H +R   
Sbjct: 206 EDYLQDARSVLLTHPSASVLFITRRGEAMTRQAFWYRIKYYAQVAGISKPLSPHTLRHSF 265

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
           AT   + GA    +    G   +   + YT  A R RL   ++R
Sbjct: 266 ATHLLNHGADLRVVQLLLGHSDLTTTQIYTHVA-RQRLQELHAR 308


>gi|28211202|ref|NP_782146.1| integrase/recombinase [Clostridium tetani E88]
 gi|28203642|gb|AAO36083.1| integrase/recombinase [Clostridium tetani E88]
          Length = 303

 Score =  142 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 46/285 (16%), Positives = 107/285 (37%), Gaps = 20/285 (7%)

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISF----ESYFDQIIRKSGD-FDYRKITTKHIRSGV 123
            T   LI++Y        L+ N+  ++      + D +  +  D  D  ++T       +
Sbjct: 10  RTRDELINKYVSRLMDKGLSKNTLDAYIRDVNRFLDFLKEREEDILDVEEVTIMAYVQSL 69

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
           +  +   SS ++ + S+R  +K+  ++ Y+  +P ++ E PK K    +  T E++    
Sbjct: 70  QKSRKANSSIVRNVVSIRNFYKFLYKKGYIDEDPVINYELPKVKRNIPKVLTVEEVDILL 129

Query: 184 SF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE--- 236
           +       +G + +   E +  +G++ ++     V  +   +  IK + +     +    
Sbjct: 130 NAPNISEEKGIRDKAMLEVMYATGVKVTELLNMTVFDVNLKLSYIKCRGSKNKERIIPIG 189

Query: 237 ------LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HG 288
                 L D       +     +  F+N    +M    F    K  A  +G+ KS   + 
Sbjct: 190 AYAVNCLDDYLSVRPNINIYNLDYLFLNLKGTQMTRQGFWKIVKKYAKISGIKKSINSYT 249

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           +R   A      GA    +    G   +   + Y+  +++ ++  
Sbjct: 250 LRHSFAVHLLQNGADMKSVQELLGHSDLAATQIYSTISNKSKIAE 294


>gi|325285115|ref|YP_004260905.1| Tyrosine recombinase xerC [Cellulophaga lytica DSM 7489]
 gi|324320569|gb|ADY28034.1| Tyrosine recombinase xerC [Cellulophaga lytica DSM 7489]
          Length = 298

 Score =  142 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 47/259 (18%), Positives = 90/259 (34%), Gaps = 23/259 (8%)

Query: 96  ESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYV 153
           E     + +K+       I+ +  +  +     +  P S  + ++ ++  F + + ++Y 
Sbjct: 33  EKLITFLNKKNITESPISISKETTQQFIYEISASINPRSQARIISGLKSFFNYLIFEDYR 92

Query: 154 AINPCLSVERPKRKTEGIRPWTKEDM----QQFKSFWSEGSQPRLAFEFLLYSGLRCSDS 209
           A NP   +E PK   +     + E++            EG + R   E L   GLR S+ 
Sbjct: 93  ADNPMDLIEAPKIGRKLPDTLSVEEINDLIDAIDLSKPEGERNRAMLETLYGCGLRVSEL 152

Query: 210 CRAGVQH--LQNNIFSIKTQKTGTIITVELP-----------DGFMKLLAMTPIGKETFF 256
               +     + +   + T K      V +            D     L +    ++  F
Sbjct: 153 TNLRLSDLFFKEDFIRV-TGKGDKQRFVPISNINKKYINIYKDEIRNHLNIKKGFEDILF 211

Query: 257 INNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWK 314
           +N   +++         K  A   G+ K  S H +R   AT   + GA    +    G +
Sbjct: 212 LNRRGRQLTRAMIFTIIKQLAETIGLKKTISPHTLRHSFATHLLENGADLRAIQQMLGHE 271

Query: 315 TVDQAETYTKGADRIRLGI 333
           ++   E Y    DR  L  
Sbjct: 272 SITTTEVYVH-IDRKHLSQ 289


>gi|317049380|ref|YP_004117028.1| tyrosine recombinase XerD [Pantoea sp. At-9b]
 gi|316950997|gb|ADU70472.1| tyrosine recombinase XerD [Pantoea sp. At-9b]
          Length = 297

 Score =  142 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 49/288 (17%), Positives = 103/288 (35%), Gaps = 27/288 (9%)

Query: 70  TLKWLISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSG 122
           T   LI ++  +  W   +LA N+  S+      +                +  +   + 
Sbjct: 2   TDSDLIEQFLDTL-WIERNLAQNTLASYRQDLQTLTGWLHHHERTLLTLEALDLQQFLAE 60

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
                +  +S+ + L+++R LF++  R++  + +P   +  PK      +  ++  +++ 
Sbjct: 61  RVEGGYKATSSARTLSAIRRLFQYLYREKLRSDDPSALLSAPKLPQRLPKDLSESQVERL 120

Query: 183 K----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVEL 237
                +      + +   E L  +GLR S+     +  +      ++   K      V +
Sbjct: 121 LQAPSTEIPLELRDKAMLELLYATGLRVSELVGLTLSDVSLRQGVVRVIGKGNKERLVPM 180

Query: 238 PDGFMKLLAMTPIGKETFFIN----------NDKQKMNATQFSIWFKAKATKAGVN---K 284
            +  +  +         + +N          N  QKM    F    K  A  AG++    
Sbjct: 181 GEEAIYWIEHYMTHGRPWLLNGQTLDVLFPSNRAQKMTRQTFWHRIKHYALLAGIDSEKL 240

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRL 331
           S H +R   AT   + GA    +    G   +   + YT  A +R+RL
Sbjct: 241 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRL 288


>gi|319896642|ref|YP_004134835.1| site-specific recombinase xerd [Haemophilus influenzae F3031]
 gi|317432144|emb|CBY80495.1| Site-specific recombinase XerD [Haemophilus influenzae F3031]
          Length = 297

 Score =  142 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 47/284 (16%), Positives = 97/284 (34%), Gaps = 27/284 (9%)

Query: 73  WLISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVES 125
            LI  +     W    L+ N+  S+      +                +  +        
Sbjct: 5   ALIDLFLNEY-WIEKGLSENTVQSYRLDLTALCDWLDKNGLSLETLDAVDLQGFLGERLE 63

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS- 184
           + +  +S  + L++MR LF++  R++Y   +P   +  PK  +   +  T++ +    + 
Sbjct: 64  KGYKATSTARMLSAMRKLFQYLYREKYRVDDPSAVLSSPKLPSRLPKYLTEQQVSDLLNT 123

Query: 185 ---FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240
                    + +   E L  +GLR ++     ++++      ++   K      V + + 
Sbjct: 124 PDVEVPLELRDKAMLELLYATGLRVTELVSLTIENMSVQQGVVRVIGKGNKERIVPMGEE 183

Query: 241 FMKL-----LAMTPI-----GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAH 287
                    L   P+       +  F +   Q+M    F    K  A  A ++    S H
Sbjct: 184 AAYWVRQFMLYGRPVLLNGQSSDVVFPSQRTQQMTRQTFWHRVKHYAILADIDADALSPH 243

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            +R   AT   + GA    +    G   +   + YT  A + RL
Sbjct: 244 VLRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVA-KERL 286


>gi|311030547|ref|ZP_07708637.1| hypothetical protein Bm3-1_08391 [Bacillus sp. m3-13]
          Length = 280

 Score =  142 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 48/271 (17%), Positives = 102/271 (37%), Gaps = 12/271 (4%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--H 128
           L  +  +Y+        +  +  ++   ++ ++R  GD +   +TT  ++  +       
Sbjct: 3   LSQVWEKYQLDKKIEGYSPLTLKTYCFQYNMLLRYFGDIELNILTTDQLKEYLIKGSTHL 62

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
            PSS    +  +R LFKWA  + ++  NP   ++ PK      +  T+ +++  +    +
Sbjct: 63  KPSSLGHRVRCIRSLFKWANDEGFIKKNPAAKLKEPKLGKRIPKFLTELEIEHLRESC-Q 121

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVE----LPDGFMK 243
            S     FEF   +G R  +  +     +   +   I   K      V           +
Sbjct: 122 NSMENALFEFFYSTGCRIGEVVKLNRDDINFASNSVIVHGKGDKEREVYFNTRCSLWLKR 181

Query: 244 LLAMTPIGKETFFINND--KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
            L       ++ FI     K++M+        K  ++ AG+ K    H +R   AT   +
Sbjct: 182 YLDERDDQDQSLFITERRPKRRMSIDLIRYIIKRISSGAGIKKNIHPHQLRHSYATHMIN 241

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIR 330
            GA    + +  G +  +    Y + + ++R
Sbjct: 242 NGAPLEVIQSLLGHEKSETTRIYAQLSGKLR 272


>gi|325577298|ref|ZP_08147782.1| tyrosine recombinase XerD [Haemophilus parainfluenzae ATCC 33392]
 gi|325160880|gb|EGC73001.1| tyrosine recombinase XerD [Haemophilus parainfluenzae ATCC 33392]
          Length = 297

 Score =  142 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 45/270 (16%), Positives = 94/270 (34%), Gaps = 24/270 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYR-----KITTKHIRSGVESRKHTPSSAIQFLTS 139
             L+ N+  S+      +       +        +  +        + +  +S  + L++
Sbjct: 18  KGLSENTVQSYRLDLTALCDWLDKQNLSLETLDPLDLQQFLGSRLEQGYKATSTARMLSA 77

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FWSEGSQPRLA 195
           MR LF++  R++Y   +P   +  PK  +   +  T++ +    +          + +  
Sbjct: 78  MRKLFQYLYREKYRTDDPSAVLNSPKLPSRLPKYLTEQQVTDLLNTPDVEIPLELRDKAM 137

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKL-----LAMTP 249
            E L  +GLR ++     ++++      ++   K      V + +          L   P
Sbjct: 138 LELLYATGLRVTELVTLTIENMNLQQGVVRVIGKGNKERIVPMGEEAAFWVRQFVLYGRP 197

Query: 250 I-----GKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG 301
           I       +  F +   Q+M    F    K  A  A ++    S H +R   AT   + G
Sbjct: 198 ILLNGQSSDVVFPSQRAQQMTRQTFWHRIKHYAVLAEIDTDALSPHVLRHAFATHLVNHG 257

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRL 331
           A    +    G   +   + YT  A + RL
Sbjct: 258 ADLRVVQMLLGHSDLSTTQIYTHVA-KERL 286


>gi|42783204|ref|NP_980451.1| site-specific tyrosine recombinase XerD [Bacillus cereus ATCC
           10987]
 gi|206976263|ref|ZP_03237171.1| integrase/recombinase XerD [Bacillus cereus H3081.97]
 gi|217961583|ref|YP_002340153.1| site-specific tyrosine recombinase XerD [Bacillus cereus AH187]
 gi|229140825|ref|ZP_04269370.1| Tyrosine recombinase xerD [Bacillus cereus BDRD-ST26]
 gi|229198213|ref|ZP_04324921.1| Tyrosine recombinase xerD [Bacillus cereus m1293]
 gi|42739132|gb|AAS43059.1| integrase/recombinase XerD [Bacillus cereus ATCC 10987]
 gi|206745459|gb|EDZ56858.1| integrase/recombinase XerD [Bacillus cereus H3081.97]
 gi|217064224|gb|ACJ78474.1| integrase/recombinase XerD [Bacillus cereus AH187]
 gi|228585232|gb|EEK43342.1| Tyrosine recombinase xerD [Bacillus cereus m1293]
 gi|228642615|gb|EEK98901.1| Tyrosine recombinase xerD [Bacillus cereus BDRD-ST26]
 gi|324327997|gb|ADY23257.1| site-specific tyrosine recombinase XerD [Bacillus thuringiensis
           serovar finitimus YBT-020]
          Length = 296

 Score =  142 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 44/271 (16%), Positives = 104/271 (38%), Gaps = 25/271 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVESRKHTPSSAI---QFL 137
             LA N+ +S+E      ++   +      + ++T  HI + ++  K    S+    + +
Sbjct: 16  KGLAKNTVVSYERDLKSYVKYLQNVEQAKSFHEVTRLHIVNFLQHLKENGKSSKTLARHI 75

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPR 193
            S+R   ++ +R+  V  +P + +E P+ + +  +  + ++++            G + +
Sbjct: 76  ASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLSVDEVEALLQTPKMTSAFGVRDK 135

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGK 252
              E L  +GLR S+     ++ +   +  ++   K      + L     + +       
Sbjct: 136 AMLELLYATGLRVSELIALNLEDVHLTMGFVRCIGKGNKERIIPLGSLATEAIQKYIEKG 195

Query: 253 ----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
                     +  F+N+   +++   F    K  A +A + K  + H +R   AT   + 
Sbjct: 196 RRELMGKKVVDALFLNHHGNRLSRQGFWKILKRLAKEANIEKELTPHTLRHSFATHLLEN 255

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRL 331
           GA    +    G   +   + YT    + RL
Sbjct: 256 GADLRAVQEMLGHADISTTQIYTH-VSKTRL 285


>gi|291548057|emb|CBL21165.1| tyrosine recombinase XerD subunit [Ruminococcus sp. SR1/5]
          Length = 294

 Score =  142 bits (358), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 42/260 (16%), Positives = 95/260 (36%), Gaps = 22/260 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDF------DYRKITTKHIRSGVESRKHTPSSAIQFLT 138
              + N+ +S++    ++     D       D  ++  +   S +E  +   S+  + + 
Sbjct: 16  KRTSHNTEVSYQRDLKKMAVYFADRGIYDIRDVGELELEGYLSYMERGQFASSTISRNVA 75

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194
           S+R LF++  ++  +  +P L ++ PK +       T +++ +          +G +   
Sbjct: 76  SIRALFQYLYQENRIERDPSLELKPPKVEKRMPEILTVDEVDRLLKQPDLNTPKGIRDSA 135

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM---TPIG 251
             E L  +G+R S+  R  ++ L   +  +          + + +     +        G
Sbjct: 136 MLELLYATGMRVSELLRLNLEDLNLRLGYVVCHDEDKERVIPIGNVCKTAMEKYLKEARG 195

Query: 252 K-------ETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGA 302
           K       E+ F N   + M+   F    K  A +AG+  + + H +R   A      GA
Sbjct: 196 KFVKENETESLFTNCSGKSMSRQGFWKVLKGYAEEAGIQHDITPHTLRHSFAAHMLQNGA 255

Query: 303 TAHELMATYGWKTVDQAETY 322
               +    G   +   + Y
Sbjct: 256 DVKSVQEMLGHSDISTTQVY 275


>gi|29348252|ref|NP_811755.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
 gi|253569382|ref|ZP_04846792.1| integrase [Bacteroides sp. 1_1_6]
 gi|298386055|ref|ZP_06995612.1| tyrosine recombinase XerD [Bacteroides sp. 1_1_14]
 gi|29340155|gb|AAO77949.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
 gi|251841401|gb|EES69482.1| integrase [Bacteroides sp. 1_1_6]
 gi|298261283|gb|EFI04150.1| tyrosine recombinase XerD [Bacteroides sp. 1_1_14]
          Length = 319

 Score =  142 bits (358), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 50/275 (18%), Positives = 99/275 (36%), Gaps = 24/275 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVESRK 127
           +I +Y++      SL+ N+  ++ +  D++     +      +      +   +G+    
Sbjct: 16  IIRKYQQYLKLEKSLSPNTLDAYLTDLDKLMSFLTLEGIDVLEVCLSDLQRFAAGLHDIG 75

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
             P S  + L+ ++  F++ +  +Y+  +P   +E PK   +     T E++    S   
Sbjct: 76  IHPRSQARILSGIKSFFRFLIMADYLEADPSELLEGPKIGLKLPEVLTVEEIDNIISSVD 135

Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-VELPDGFM 242
               EG + R   E L   GLR S+     +  L  +   IK +  G+    V +    +
Sbjct: 136 RSKAEGQRNRAILETLYSCGLRVSELVSLKLSDLYFDEGFIKVEGKGSKQRLVPISPRAI 195

Query: 243 -----------KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289
                      ++          F      + ++        K  A  AG+ K  S H  
Sbjct: 196 NEIKLYFLDRNRIEVKKDYEDFVFVSQRRGKSLSRIMIFHMIKELAQNAGITKNISPHTF 255

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           R   AT   + GA    +    G +++   E YT 
Sbjct: 256 RHSFATHLLEGGANLRAIQCMLGHESIATTEIYTH 290


>gi|229163028|ref|ZP_04290984.1| Tyrosine recombinase xerD [Bacillus cereus R309803]
 gi|228620434|gb|EEK77304.1| Tyrosine recombinase xerD [Bacillus cereus R309803]
          Length = 296

 Score =  142 bits (358), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 44/271 (16%), Positives = 105/271 (38%), Gaps = 25/271 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESRKHTPSSAI---QFL 137
             LA N+ +S+E      ++   + +    + ++T  HI + ++  K    S+    + +
Sbjct: 16  KGLAKNTVVSYERDLKSYVKYLQNVEQTKTFHEVTRLHIVNFLQHLKENGKSSKTLARHI 75

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPR 193
            S+R   ++ +R+  V  +P + +E P+ + +  +  + ++++            G + +
Sbjct: 76  ASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLSVDEVEALLQTPKMTSAFGVRDK 135

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGK 252
              E L  +GLR S+     ++ +   +  ++   K      + L     + +       
Sbjct: 136 AMLELLYATGLRVSELIALNLEDVHLTMGFVRCIGKGNKERIIPLGSLATEAIQKYIEKG 195

Query: 253 ----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
                     +  F+N+   +++   F    K  A +A + K  + H +R   AT   + 
Sbjct: 196 RRELMGKKVVDALFLNHHGNRLSRQGFWKILKRLAKEANIEKELTPHTLRHSFATHLLEN 255

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRL 331
           GA    +    G   +   + YT    + RL
Sbjct: 256 GADLRAVQEMLGHADISTTQIYTH-VSKTRL 285


>gi|237734604|ref|ZP_04565085.1| tyrosine recombinase xerC [Mollicutes bacterium D7]
 gi|229382424|gb|EEO32515.1| tyrosine recombinase xerC [Coprobacillus sp. D7]
          Length = 304

 Score =  142 bits (358), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 46/286 (16%), Positives = 94/286 (32%), Gaps = 33/286 (11%)

Query: 68  PTTLKWLISEYRKSAHWGS-LAVNSRISFESYFDQI--------IRKSGDFDYRKITTKH 118
            TTL     +Y     +    A  +  S++   D          I    D  Y  +  + 
Sbjct: 4   KTTLDNYFRQYLDYLQYQRHYADKTIESYKRQIDHFKQFLIEESIDDYNDVSYAML--RG 61

Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
             + +  +  + ++    L+++R  F + +++E +  NP L +E  K           E+
Sbjct: 62  YLTKLYEKNLSKTTINHKLSALRSFFNYLLKEELINDNPFLLIESQKVAKRNPDFLFPEE 121

Query: 179 M----QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTII 233
           +       ++    G + +   E +  SGLRCS+     + ++  N +      K     
Sbjct: 122 ILGLLDSIETKDDLGIRNKAMMELMYASGLRCSEVVNLQLSNIDFNQMVLFIHGKGNKDR 181

Query: 234 TVELPD-----------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIW----FKAKAT 278
            V   D              + L +   G    F+N     +             +   +
Sbjct: 182 YVPFHDYAGEWLIKYIQEARENLMIKNEGHNFVFVNKFGNPLTNRGVENIVDRIMRLYDS 241

Query: 279 KAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              ++   H +R   AT   +AGA    +    G + +   + YT 
Sbjct: 242 TKKIH--PHTIRHSFATHLLNAGADIRTVQELLGHENLSTTQIYTH 285


>gi|145634691|ref|ZP_01790400.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae
           PittAA]
 gi|145268236|gb|EDK08231.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae
           PittAA]
          Length = 297

 Score =  142 bits (358), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 46/282 (16%), Positives = 95/282 (33%), Gaps = 26/282 (9%)

Query: 73  WLISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFDYR-----KITTKHIRSGVES 125
            LI  +     W    L+ N+  S+      +       D        +  +        
Sbjct: 5   ALIDLFLNEY-WIEKGLSENTVQSYRLDLTALCDWLDKNDLSLETLDAVDLQGFLGERLE 63

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS- 184
           + +  +S  + L++MR LF++  R++Y   +P   +  PK  +   +  T++ +    + 
Sbjct: 64  KGYKATSTARMLSAMRKLFQYLYREKYRVDDPSAVLSSPKLPSRLPKYLTEQQVSDLLNT 123

Query: 185 ---FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240
                    + +   E L  +GLR ++     ++++      ++   K      V + + 
Sbjct: 124 PDVEVPLELRDKAMLELLYATGLRVTELVSLTIENMSVQQGVVRVIGKGNKERIVPMGEE 183

Query: 241 FMKL-----LAMTPI-----GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAH 287
                    L   P+       +  F +   Q+M    F    K  A  A ++    S H
Sbjct: 184 AAYWVRQFMLYGRPVLLNRQSSDVVFPSQRAQQMTRQTFWHRVKHYAILADIDADTLSPH 243

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            +R   AT   + GA    +    G   +   + YT  A   
Sbjct: 244 VLRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKER 285


>gi|150026059|ref|YP_001296885.1| tyrosine recombinase XerD [Flavobacterium psychrophilum JIP02/86]
 gi|149772600|emb|CAL44083.1| Tyrosine recombinase XerD [Flavobacterium psychrophilum JIP02/86]
          Length = 299

 Score =  142 bits (358), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 53/274 (19%), Positives = 99/274 (36%), Gaps = 27/274 (9%)

Query: 85  GSLAVNSRISFESYFD----QIIRKSGDFDYRKITTKHIRSGVE--SRKHTPSSAIQFLT 138
             L+ NS  ++    +     +   +       I  + I+  +   S+   P S  + ++
Sbjct: 18  RGLSKNSVANYVLDIEKLNHYLSDNNIHVSPVNINEQTIQQFIYEISKSVNPRSQARTIS 77

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194
            ++  F + + ++Y   NP   +E P+   +       ED+ +  +      +EG + R 
Sbjct: 78  GLKSFFSYLIFEDYRPDNPLALIETPRLGRKLPDTLNIEDIDKLIAAINLTTNEGERNRA 137

Query: 195 AFEFLLYSGLRCSDSCRAGVQH--LQNNIFSIKTQKTGTIITVELPDGFMK--------- 243
             E L   GLR S+     +           I T K      V + +   K         
Sbjct: 138 MLETLYACGLRVSELVSLKISDLFFAEGFIKI-TGKGNKQRFVPISEYTQKYIEIYKNTD 196

Query: 244 --LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
             LL++    ++T F+N   +++         K  A + G+NK  S H  R   AT   +
Sbjct: 197 RNLLSIQKGHEDTLFLNRRGRQLTRAMIFTIIKNLAVEIGLNKVISPHTFRHSFATHLLE 256

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
            GA    +    G +++   E Y    DR  L  
Sbjct: 257 NGADLRSIQLMLGHESITTTEIYMH-VDRKHLSQ 289


>gi|114048718|ref|YP_739268.1| tyrosine recombinase XerD [Shewanella sp. MR-7]
 gi|113890160|gb|ABI44211.1| tyrosine recombinase XerD [Shewanella sp. MR-7]
          Length = 300

 Score =  142 bits (358), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 50/288 (17%), Positives = 104/288 (36%), Gaps = 26/288 (9%)

Query: 74  LISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVESR 126
           LI  +     W    L+ N+  ++ +      R       R I       +   +    +
Sbjct: 10  LIDAFLDDL-WSSKGLSDNTLSAYRTDLRHFDRYQQSQGLRLIEVGQADVRAYLAYRVQQ 68

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185
           +   +S+ + L+S+R  + + ++ + +A +P   +E PK   +     ++  + +  +  
Sbjct: 69  QFARTSSARLLSSLRRFYTYLLQTKQIAGDPMALIESPKLSRQLPDSLSESQVDRLLAEP 128

Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPD-- 239
                   + +   E L  +GLR S+     ++ +      ++   K G    V + +  
Sbjct: 129 NVDDPVECRDKAMLELLYATGLRVSELVGLTMEQMSLRQGLVRIVGKGGKERLVPMGELA 188

Query: 240 --------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGV 289
                    F +   +  I  +  F +   Q M    F    K  A++AG+    S H +
Sbjct: 189 ITEVERYLSFARHELLGNIQSDVVFPSKRSQMMTRQTFWHRIKLYASRAGIETELSPHTL 248

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
           R   AT   + GA    +    G   +   + YT  A R RL   + +
Sbjct: 249 RHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVA-RARLQELHQQ 295


>gi|327438335|dbj|BAK14700.1| integrase [Solibacillus silvestris StLB046]
          Length = 280

 Score =  142 bits (358), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 45/271 (16%), Positives = 102/271 (37%), Gaps = 12/271 (4%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-- 128
           L     +Y++       +  +  ++   ++ ++R  GD D    +T+ ++  +    +  
Sbjct: 3   LSEAWKKYQQDKKIEGYSTLTLKTYCFQYNLLLRFFGDIDMNGFSTEKLKEYLIQSGNHL 62

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
            PSS    +  ++ LF+W+  + Y+  NP   ++ PK      +  ++ +++  +     
Sbjct: 63  KPSSLGHRIRCVKSLFRWSHEEGYILKNPAAKLKEPKLGKRIPKFLSELEIEHLREACQT 122

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVE----LPDGFMK 243
            +     FEF+  +G R  +  +     +       I   K      V           +
Sbjct: 123 -TMENALFEFMYSTGCRIGEVVKLDRHDIDFRTNSVIVQGKGDKEREVYFNTRCSIWLKR 181

Query: 244 LLAMTPIGKETFFINND--KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
            L          FI +   K++M+        K  + +AG+ K    H +R   AT   +
Sbjct: 182 YLDEREDDDPCLFITDRKPKRRMSIDNLRYIIKRVSNRAGIKKCIHPHQLRHSYATHMIN 241

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIR 330
            GA    + +  G +  +  + Y + + +IR
Sbjct: 242 NGAPIDVIQSLLGHEKSETTKIYAQLSGKIR 272


>gi|52141402|ref|YP_085426.1| site-specific tyrosine recombinase XerD [Bacillus cereus E33L]
 gi|228987282|ref|ZP_04147403.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229157674|ref|ZP_04285749.1| Tyrosine recombinase xerD [Bacillus cereus ATCC 4342]
 gi|51974871|gb|AAU16421.1| integrase/recombinase (tyrosine recombinase) [Bacillus cereus E33L]
 gi|228625631|gb|EEK82383.1| Tyrosine recombinase xerD [Bacillus cereus ATCC 4342]
 gi|228772511|gb|EEM20956.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 296

 Score =  142 bits (358), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 45/271 (16%), Positives = 104/271 (38%), Gaps = 25/271 (9%)

Query: 85  GSLAVNSRISFES----YFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI---QFL 137
             LA N+ +S+E     Y   + +      + ++T  HI + ++  K    S+    + +
Sbjct: 16  KGLAKNTVVSYERDLKSYVKYLQKVEQAKSFHEVTRLHIVNFLQHLKENGKSSKTLARHI 75

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPR 193
            S+R   ++ +R+  V  +P + +E P+ + +  +  + ++++            G + +
Sbjct: 76  ASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLSVDEVEALLQTPKMTSAFGVRDK 135

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGK 252
              E L  +GLR S+     ++ +   +  ++   K      + L     + +       
Sbjct: 136 AMLELLYATGLRVSELIALNLEDVHLTMGFVRCIGKGNKERIIPLGSLATEAIQKYIEKG 195

Query: 253 ----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
                     +  F+N+   +++   F    K  A +A + K  + H +R   AT   + 
Sbjct: 196 RRELMGKKVVDALFLNHHGNRLSRQGFWKILKRLAKEANIEKELTPHTLRHSFATHLLEN 255

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRL 331
           GA    +    G   +   + YT    + RL
Sbjct: 256 GADLRAVQEMLGHADISTTQIYTH-VSKTRL 285


>gi|189465186|ref|ZP_03013971.1| hypothetical protein BACINT_01531 [Bacteroides intestinalis DSM
           17393]
 gi|189437460|gb|EDV06445.1| hypothetical protein BACINT_01531 [Bacteroides intestinalis DSM
           17393]
          Length = 316

 Score =  142 bits (358), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 52/274 (18%), Positives = 99/274 (36%), Gaps = 23/274 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQII-----RKSGDFDYRKITTKHIRSGVESRK 127
           +I +Y++      +L+ N+  ++ +  ++++                  +   +G+    
Sbjct: 16  IIRKYQQYLKLEKALSANTLDAYLTDLNKLLCFLKTENIDMLAVTLDDLQRFAAGLHDIG 75

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
             P S  + L+ ++  F + V  +Y   +P   +E PK   +     T E++    S   
Sbjct: 76  IHPRSQARILSGIKSFFHFLVMADYREDDPSELLEGPKIGFKLPEVLTVEEIDTIISTVD 135

Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-VELPDGF- 241
               EG + R   E L   GLR S+ C   +  L  +   IK +  G+    V +     
Sbjct: 136 MSKKEGQRNRAILETLYSCGLRVSELCNLKLSELYFDEGFIKVEGKGSKQRLVPISPRAI 195

Query: 242 ---------MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290
                      L  +    ++  F+      ++        K  A KAG+ K  S H  R
Sbjct: 196 KEIKYWLLDRNLGKIKKGFEDYVFLARWGNSISRIMVFHLIKELAEKAGITKNISPHTFR 255

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              AT   + GA    +    G +++   E YT 
Sbjct: 256 HSFATHLLEGGANLRAIQCMLGHESIATTEIYTH 289


>gi|85059199|ref|YP_454901.1| putative phage integrase [Sodalis glossinidius str. 'morsitans']
 gi|84779719|dbj|BAE74496.1| putative phage integrase [Sodalis glossinidius str. 'morsitans']
          Length = 340

 Score =  142 bits (358), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 64/337 (18%), Positives = 113/337 (33%), Gaps = 39/337 (11%)

Query: 6   RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHE---STFIPAYMSALTGSTPKREYIN 62
           +L   V +     GK   YF+    + I L  P +   S     Y   L           
Sbjct: 12  KLSKNVYR-----GKYKTYFKPSQNQTIAL-GPKDMSISETWRQYEVEL----------- 54

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122
           S   K  T   L   +  SA++  L   ++  +  +  ++I   G+     I  +H+R+ 
Sbjct: 55  SELTKVITFSRLWHSFLGSAYFSELKPRTQKDYLQHQKKLIAVFGEVKADNIKPEHVRTF 114

Query: 123 VESRK-HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
           ++ R   + + A   + SM  ++KW   + YV  NPC  V + K      R  T E+   
Sbjct: 115 MDKRGLQSKTQANHEMASMSHVYKWGYERGYVKGNPCAGVMKFKAVKR-DRYITDEEYTA 173

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241
             +   +    + A E       R SD      Q +      I+  KTG           
Sbjct: 174 IYNAADD--VVKAAMEIAYLCAARLSDVLGMKWQQITEQGIFIQQVKTGIKQIKAWTPRL 231

Query: 242 MKLLAM-----TPIGKET-FFINNDKQKMNATQFSIWFKAKATKAG------VNKSAHGV 289
            + + +      P   +T   +   K       FS  +    +KA       ++ + H +
Sbjct: 232 REAIEIAKSSSAPAQADTPVIMGQHKGHYTKRGFSNRWTEARSKASAQLGYELDCTFHDL 291

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            K      +D   +  +     G K+  Q   Y +  
Sbjct: 292 -KAKG--ISDYKGSTKDKQLFSGHKSESQVLVYDRKV 325


>gi|157374032|ref|YP_001472632.1| tyrosine recombinase XerD [Shewanella sediminis HAW-EB3]
 gi|157316406|gb|ABV35504.1| tyrosine recombinase XerD [Shewanella sediminis HAW-EB3]
          Length = 304

 Score =  142 bits (358), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 49/275 (17%), Positives = 103/275 (37%), Gaps = 23/275 (8%)

Query: 85  GSLAVNSRISFE---SYFDQIIRKSGD--FDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
             L+ N+  ++    ++FD+ I++SG    +  +   +        +    +S+ + ++S
Sbjct: 26  RGLSDNTLSAYRTDLNHFDRHIQRSGQQLTEVSQEGIRGYLDIRFEQGFARTSSARLVSS 85

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195
           +R  + + V  + + INP   ++ PK   +     ++ D+ +  S      S   + +  
Sbjct: 86  LRRFYGFLVICKKIEINPTAQIKSPKIARKLPGSLSEFDVDRLLSEPDVEDSIECRDKAM 145

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF----------MKL 244
            E L  +GLR ++     ++ L      ++   K G    V + +             + 
Sbjct: 146 LELLYATGLRVTELVSLTMEQLSLRQGLVRVIGKGGKERLVPMGELAVDNIEYYLQGARA 205

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGA 302
             +     +  F +     M    F    K  A ++GV    S H +R   AT   + GA
Sbjct: 206 ELLKQKQSDVLFPSKRGVMMTRQTFWHRIKLYALRSGVSTELSPHTLRHAFATHLLNHGA 265

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
               +    G   +   + YT  A + RL   +S 
Sbjct: 266 DLRVVQLLLGHSDLSTTQIYTHVA-KARLSQLHSE 299


>gi|238783654|ref|ZP_04627674.1| Tyrosine recombinase xerD [Yersinia bercovieri ATCC 43970]
 gi|238715367|gb|EEQ07359.1| Tyrosine recombinase xerD [Yersinia bercovieri ATCC 43970]
          Length = 299

 Score =  142 bits (358), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 96/278 (34%), Gaps = 26/278 (9%)

Query: 74  LISEYRKSAHW--GSLAVNSRISFESYFDQI---IRKSGDFDYRK--ITTKHIRSGVESR 126
           LI ++   A W   +LA N+  S+      +   +   G    R      +   +     
Sbjct: 8   LIEQFL-DALWLERNLAENTLASYRLDLHALTGWLDHHGSDLLRAGSQELQSFLAERIEG 66

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185
            +  +S+ + L++MR LF++  R++    +P   +  PK      +  ++  +    +  
Sbjct: 67  GYKATSSARLLSAMRRLFQYLYREKLRDDDPTAILSSPKLPQRLPKDLSEAQVDTLLNSP 126

Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241
                   + +   E L  +GLR S+     +  +      ++   K      V L +  
Sbjct: 127 NVDIPLELRDKAMLEVLYATGLRVSELVGLTISDVSLRQGVVRVIGKGNKERLVPLGEEA 186

Query: 242 MKLLAMTPIGKETFFIN----------NDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288
           +  +         + IN          N  Q+M    F    K  A  AG++    S H 
Sbjct: 187 VYWIENYMDHGRPWLINGQSLDVLFPSNRSQQMTRQTFWHRIKHYAILAGIDSERLSPHV 246

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           +R   AT   + GA    +    G   +   + YT  A
Sbjct: 247 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA 284


>gi|187779532|ref|ZP_02996005.1| hypothetical protein CLOSPO_03128 [Clostridium sporogenes ATCC
           15579]
 gi|187773157|gb|EDU36959.1| hypothetical protein CLOSPO_03128 [Clostridium sporogenes ATCC
           15579]
          Length = 291

 Score =  142 bits (358), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 44/282 (15%), Positives = 106/282 (37%), Gaps = 21/282 (7%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS-GD----FDYRKITTKHIRSGVESR 126
           K +I  Y K     +L+ N+  ++    ++      G          +T       ++  
Sbjct: 2   KNIIEIYIKDLQKKNLSKNTLEAYRRDVEKFSEFVKGREEKILSVDTVTIMAFVQYLQRE 61

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
               SS ++ + S+R  +K+ +++  V+ +P L  E PK +    +  + E++ +  +  
Sbjct: 62  GRATSSIVRNIVSIRNFYKYLIKKNMVSEDPTLGYEIPKIERTIPKILSVEEVDKLLNSP 121

Query: 187 S---EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG--- 240
               +G + +   E +  +G++ ++     +  +      IK + +     + +P G   
Sbjct: 122 DSSKKGLRDKAMLELMYATGVKITELLNLNIYDINLKFNYIKCRGSKKRERI-IPIGSYA 180

Query: 241 ---FMKLLAMTPIGK----ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRK 291
                  L + P       +  F+N    +M    F    K  A +A ++K   ++ +R 
Sbjct: 181 VKCLKNYLEVRPAINVYNLDYLFLNLKGTQMTRQGFWKIIKFYAKEASIDKEIDSYTLRH 240

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
             A      GA    +    G K +   + Y+  + + ++  
Sbjct: 241 SFAVHLLQNGADIKSVQELLGHKDLAATQIYSSISKKSKIAE 282


>gi|153001893|ref|YP_001367574.1| phage integrase family protein [Shewanella baltica OS185]
 gi|151366511|gb|ABS09511.1| phage integrase family protein [Shewanella baltica OS185]
          Length = 338

 Score =  142 bits (358), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 63/336 (18%), Positives = 109/336 (32%), Gaps = 33/336 (9%)

Query: 7   LPPFVTKERTRHGKIIYYF-RKGHGRRIRLPYPHES-TFIPAYMSALTGSTPKREYINSP 64
           LPP V   R R GK I Y  ++ +  ++             AY  A+   + +       
Sbjct: 11  LPPSVYIHR-RAGKPICYVIKRPNSTKVLCKITASKAEVWTAYEKAVAEFSLE------- 62

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
                T+  L  EY  SA++  LA  ++   +   +   +  G     +I   HIR  ++
Sbjct: 63  ----YTVNRLAMEYLDSANFKELAPRTQRDRDRELNVFSKVFGSMLPDRIEPHHIRRYMD 118

Query: 125 SRK-HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
            R   + + A   L +  V+F W   +     NP   V++ K K    R  T  +     
Sbjct: 119 LRGQSSKTQANHELAAASVMFAWGYERGRCKSNPAKGVKKFKVKAR-DRYITDAEFNALL 177

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
           S      + ++A E       R  D  +     +  +   I+  KTG            K
Sbjct: 178 SCAEI--RLKIACEISYLCAARQGDVLQLTWSQVNEDGLFIQQGKTGKKQIKAWSPRLRK 235

Query: 244 LLAMTPIGKE-----TFFINNDKQKMNATQFSIWFKAKATKAGVNK-------SAHGVRK 291
            +A                 +   K+        +K    K  ++        + H + K
Sbjct: 236 AIAEARTLHSGIASIYVINKHPSGKLTQDGLRSAWKRAMAKMEMDYPQIERTFTFHDI-K 294

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
                  +   T  E     G KT+ Q  TY +  +
Sbjct: 295 AKGVSDFE--GTLSEKQQYSGHKTLAQVNTYDRKVE 328


>gi|107023497|ref|YP_621824.1| site-specific tyrosine recombinase XerD [Burkholderia cenocepacia
           AU 1054]
 gi|116690579|ref|YP_836202.1| site-specific tyrosine recombinase XerD [Burkholderia cenocepacia
           HI2424]
 gi|170733919|ref|YP_001765866.1| site-specific tyrosine recombinase XerD [Burkholderia cenocepacia
           MC0-3]
 gi|105893686|gb|ABF76851.1| Tyrosine recombinase XerD [Burkholderia cenocepacia AU 1054]
 gi|116648668|gb|ABK09309.1| tyrosine recombinase XerD [Burkholderia cenocepacia HI2424]
 gi|169817161|gb|ACA91744.1| tyrosine recombinase XerD [Burkholderia cenocepacia MC0-3]
          Length = 318

 Score =  142 bits (358), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 49/268 (18%), Positives = 90/268 (33%), Gaps = 22/268 (8%)

Query: 85  GSLAVNSRISFES---YFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSSAIQFLTSM 140
             LA N+  ++      F Q +  + D          +   + +R     +S+ + L+  
Sbjct: 41  HGLARNTLDAYRRDLALFSQWLAATHDAPLDSADEAMVTGYIAARSDGKATSSNRRLSVF 100

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAF 196
           R  + WAVR+   + +P L +   K+        ++  ++        G+    + R   
Sbjct: 101 RRYYGWAVREHRASADPTLRITSAKQGARFPSTLSEAQVEALLGAPDIGTPLGLRDRTML 160

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLLAM 247
           E +  SGLR S+        +  N   ++    G+   +          +          
Sbjct: 161 ELMYASGLRVSELVTLKTVEVGLNEGVVRVMGKGSKERLVPFGEVAHGWIERYLRDARPA 220

Query: 248 T--PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGAT 303
                  +  F+      M   QF    K  A +A V  + S H +R   AT   + GA 
Sbjct: 221 LLGARAADALFVTARGDGMTRQQFWNIIKRHAQQADVRAHLSPHTLRHAFATHLLNHGAD 280

Query: 304 AHELMATYGWKTVDQAETYTKGADRIRL 331
              +    G   +   + YT  A R RL
Sbjct: 281 LRVVQLLLGHSDISTTQIYTHVA-RERL 307


>gi|209694155|ref|YP_002262083.1| site-specific tyrosine recombinase XerD [Aliivibrio salmonicida
           LFI1238]
 gi|208008106|emb|CAQ78247.1| tyrosine recombinase XerD [Aliivibrio salmonicida LFI1238]
          Length = 300

 Score =  142 bits (358), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 44/279 (15%), Positives = 102/279 (36%), Gaps = 26/279 (9%)

Query: 73  WLISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFDYR-----KITTKHIRSGVES 125
            LI  +  +  W    L+ N+  S+ +   +++    +  Y+      +     ++ +  
Sbjct: 8   ALIERFLDTM-WMERGLSENTLSSYRNDLMKLLNWLDENHYKCASISAMGLNEYQAYLVD 66

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQ 181
           +++  +S  + L+++R  F++  R++    +P   +  PK      +  ++E +    + 
Sbjct: 67  KQYKQTSRARMLSALRRFFQYLHREKIRGDDPTALLMSPKLPQRLPKDLSEEQVNDLLEA 126

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDG 240
                    + R   E L  +GLR ++     +++L      ++ T K      V + + 
Sbjct: 127 PNVDDPLELRDRAMLELLYATGLRVTELVSLTMENLSLRQGVVRVTGKGDKERLVPMGEN 186

Query: 241 FMKLLAMTPIGK----------ETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAH 287
            +  +                 +  F +   ++M    F    K  A  AG++    S H
Sbjct: 187 AVYWIQTFLDQGRSTLLGEKSSDVVFPSRRARQMTRQTFWHRIKHYAVIAGIDTDKLSPH 246

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            +R   AT   + GA    +    G   +   + YT  A
Sbjct: 247 VLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVA 285


>gi|294340185|emb|CAZ88557.1| Tyrosine recombinase xerD [Thiomonas sp. 3As]
          Length = 317

 Score =  142 bits (358), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 56/308 (18%), Positives = 109/308 (35%), Gaps = 33/308 (10%)

Query: 59  EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD---QIIRKSGDFDYRKIT 115
           E+  +P    TT+               L+ N+  ++        + +  S      + T
Sbjct: 9   EWPPAPEACATTIDRFCDALWLED---GLSPNTLAAYRRDLTLMARWLAFSQRQPLIEAT 65

Query: 116 TKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
            + +++ + +R  +   +S+ + L  +R  ++WA+R+     +P L ++  ++     + 
Sbjct: 66  LRDVQAYIAARFMQSKATSSNRRLVVLRRFYRWALREHLRTDDPTLQLDTARQPPRRPKT 125

Query: 174 WTKEDMQQFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQK 228
            ++  ++   +        G + R   E L  SGLR S+     V  +  +   ++   K
Sbjct: 126 LSEAQVEALLAAPEVDTPLGLRDRAMLELLYASGLRVSELVALPVVRVSLDQGVVQIAGK 185

Query: 229 TGTIITVELP----DGFMKLLAMT------PIGKETFFINND-------KQKMNATQFSI 271
            G    V       D     L                F+             M    F +
Sbjct: 186 GGKERLVPFGSAAQDWLQNYLRTARHELLQGRDSPFLFVTARSGQSARETTGMTRQMFWM 245

Query: 272 WFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             KA A KAG++   S H +R   AT   + GA    +    G   +   + YT  A R 
Sbjct: 246 RIKAYARKAGIDVPLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHIA-RE 304

Query: 330 RLGIKNSR 337
           RL   ++R
Sbjct: 305 RLKTLHAR 312


>gi|229075797|ref|ZP_04208774.1| Tyrosine recombinase xerD [Bacillus cereus Rock4-18]
 gi|229098560|ref|ZP_04229501.1| Tyrosine recombinase xerD [Bacillus cereus Rock3-29]
 gi|229104696|ref|ZP_04235358.1| Tyrosine recombinase xerD [Bacillus cereus Rock3-28]
 gi|229117586|ref|ZP_04246958.1| Tyrosine recombinase xerD [Bacillus cereus Rock1-3]
 gi|228665906|gb|EEL21376.1| Tyrosine recombinase xerD [Bacillus cereus Rock1-3]
 gi|228678760|gb|EEL32975.1| Tyrosine recombinase xerD [Bacillus cereus Rock3-28]
 gi|228684882|gb|EEL38819.1| Tyrosine recombinase xerD [Bacillus cereus Rock3-29]
 gi|228707349|gb|EEL59545.1| Tyrosine recombinase xerD [Bacillus cereus Rock4-18]
          Length = 296

 Score =  142 bits (358), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 44/271 (16%), Positives = 105/271 (38%), Gaps = 25/271 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESRKHTPSSAI---QFL 137
             LA N+ +S+E      ++   + +    + ++T  HI + ++  K    S+    + +
Sbjct: 16  KGLAKNTVVSYERDLKSYVKYLQNVEQMKTFHEVTRLHIVNFLQYLKENGKSSKTLARHI 75

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPR 193
            S+R   ++ +R+  V  +P + +E P+ + +  +  + ++++            G + +
Sbjct: 76  ASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLSIDEVEALLQTPKMTSAFGIRDK 135

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGK 252
              E L  +GLR S+     ++ +   +  ++   K      + L     + +       
Sbjct: 136 AMLELLYATGLRVSELIALNLEDVHLTMGFVRCIGKGNKERIIPLGSLATEAIQKYIEKG 195

Query: 253 ----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
                     +  F+N+   +++   F    K  A +A + K  + H +R   AT   + 
Sbjct: 196 RRELMGKKVVDALFLNHHGNRLSRQGFWKILKRLAKEANIEKELTPHTLRHSFATHLLEN 255

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRL 331
           GA    +    G   +   + YT    + RL
Sbjct: 256 GADLRAVQEMLGHADISTTQIYTH-VSKARL 285


>gi|261250247|ref|ZP_05942823.1| site-specific recombinase XerD [Vibrio orientalis CIP 102891]
 gi|260939363|gb|EEX95349.1| site-specific recombinase XerD [Vibrio orientalis CIP 102891]
          Length = 302

 Score =  142 bits (357), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 41/265 (15%), Positives = 95/265 (35%), Gaps = 23/265 (8%)

Query: 85  GSLAVNSRISFE----SYFDQIIRKSGDFDYRKIT-TKHIRSGVESRKHTPSSAIQFLTS 139
             L+ N+  S+          +   +   D+  ++  +  ++ +    +  +S  + L++
Sbjct: 23  RGLSENTLASYRTDLVKLLRWMSTNNYKLDFISLSGLQEYQAWLVDEGYKQTSRARMLSA 82

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLA 195
           +R LF++  R++    +P   +  PK      +  ++E +               + +  
Sbjct: 83  IRRLFQYLHREKVRGDDPSALLVSPKLPKRLPKDLSEEQVDALLDAPDPNDAMELRDKAM 142

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAM------- 247
            E L  +GLR ++     ++++      ++ T K G    V + +  +  +         
Sbjct: 143 LELLYATGLRVTELVSLTMENVSLRQGVVRVTGKGGKERLVPMGENAVDWIETFLQQGRS 202

Query: 248 ---TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG 301
                   +  F +   ++M    F    K  A  AG++    S H +R   AT   + G
Sbjct: 203 ELLGETTSDVVFPSKRARQMTRQTFWHRIKHYAVVAGIDTEQLSPHVLRHAFATHLLNYG 262

Query: 302 ATAHELMATYGWKTVDQAETYTKGA 326
           A    +    G   +   + YT  A
Sbjct: 263 ADLRVVQMLLGHSDLSTTQIYTHVA 287


>gi|253566424|ref|ZP_04843877.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5]
 gi|251944596|gb|EES85071.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5]
 gi|301165207|emb|CBW24778.1| putative tyrosine recombinase [Bacteroides fragilis 638R]
          Length = 317

 Score =  142 bits (357), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 47/274 (17%), Positives = 100/274 (36%), Gaps = 23/274 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQII-----RKSGDFDYRKITTKHIRSGVESRK 127
           +I +Y++      SL+ N+  ++ +  ++++           +      +   +G+    
Sbjct: 16  IIKKYQQYLKLEKSLSKNTLEAYLTDLEKLLSFLSAEGVEILEVSLTDLQRFAAGLHDIG 75

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
               S  + ++ ++  F + +  +Y+  +P   +E PK   +     T E++ +  S   
Sbjct: 76  IHARSQARIISGIKSFFHFLIIADYIEADPSELLEGPKIGFKLPEVLTVEEIDRIISTID 135

Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-VELPDGF- 241
               EG + R   E L   GLR S+     +  L  +   IK +  G+    V +     
Sbjct: 136 LSKNEGQRNRAILETLYSCGLRVSELTGLKLSDLYFDEGFIKVEGKGSKQRLVPISPKAI 195

Query: 242 ---------MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVR 290
                       + +    ++  F++     ++        K  A  AG+  N S H  R
Sbjct: 196 QEIKLYFLDRNRINIKKDHEDYLFLSRRGTHLSRIMIFHLIKELADMAGITQNISPHTFR 255

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              AT   + GA    +    G +++   E YT 
Sbjct: 256 HSFATHLLEGGANLRAIQCMLGHESISTTEIYTH 289


>gi|242279423|ref|YP_002991552.1| tyrosine recombinase XerD [Desulfovibrio salexigens DSM 2638]
 gi|242122317|gb|ACS80013.1| tyrosine recombinase XerD [Desulfovibrio salexigens DSM 2638]
          Length = 304

 Score =  142 bits (357), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 47/274 (17%), Positives = 88/274 (32%), Gaps = 23/274 (8%)

Query: 73  WLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
             I  Y +       L+ NS   + S  +       D    KI     ++ +    +  S
Sbjct: 13  QWIDRYLEYLLIERGLSENSLSGYLSDLESFQSFLEDRS-AKIEDATSQTLLLYLTYLRS 71

Query: 132 SA------IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
            A       + L+S+R  F +   + ++  +P   +E PK   +     + E++ +  + 
Sbjct: 72  KALKSTSLARHLSSLRGFFAFCTSRGFIKEDPATLLENPKLPRKIPEFLSPEEIGRMLAL 131

Query: 186 ----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240
                  G + R   E L  +G+R S+     ++        +    K      V +   
Sbjct: 132 PKLTEKLGFRDRTMLELLYAAGMRVSELINLNIEDFDPQTGVLIIFGKGSKERLVPIHYV 191

Query: 241 FM--------KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVR 290
                               +  F+N   + +         K  A +AG+ +S   H  R
Sbjct: 192 AQNFLNQYIKDWRPAFNPKVKNIFLNRSGKGLTRQGVWKLIKKFALEAGIKRSISPHTFR 251

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              AT   D GA    +    G   ++  E YT 
Sbjct: 252 HSFATHLLDGGADLRTVQLLLGHSDINATEIYTH 285


>gi|229086660|ref|ZP_04218828.1| Tyrosine recombinase xerD [Bacillus cereus Rock3-44]
 gi|228696607|gb|EEL49424.1| Tyrosine recombinase xerD [Bacillus cereus Rock3-44]
          Length = 296

 Score =  142 bits (357), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 48/271 (17%), Positives = 111/271 (40%), Gaps = 25/271 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESRKHTPSSAI---QFL 137
             LA N+ +S+E      ++   + +    + ++T  HI + ++  K    S+    + +
Sbjct: 16  KGLAKNTVVSYERDLKSYVKYLQNVEQIKTFHEVTRIHIVNFLQYLKENGKSSKTLARHI 75

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KSFWSEGSQPR 193
            S+R   ++ +R+  V  +P + +E P+ + +  +  +  +++      K+  + G + +
Sbjct: 76  ASIRSFHQFLLRERVVEHDPSVHIETPQGERKLPKVLSVGEVEALLQTPKATSAFGIRDK 135

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLL------- 245
              E L  +GLR S+     ++ +   +  ++   K      + L     + +       
Sbjct: 136 AMLELLYATGLRVSELIALNLEDVHLTMGFVRCIGKGNKERIIPLGSLATEAIQRYIEKG 195

Query: 246 AMTPIGKET---FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
               +GK+T    F+N+   +++   F    K  A +A + K  + H +R   AT   + 
Sbjct: 196 RRELVGKKTVDALFLNHHGNRLSRQGFWKILKRLAKEANIEKELTPHTLRHSFATHLLEN 255

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRL 331
           GA    +    G   +   + YT    + RL
Sbjct: 256 GADLRAVQEMLGHADISTTQIYTH-VSKTRL 285


>gi|228922841|ref|ZP_04086139.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228836896|gb|EEM82239.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 296

 Score =  142 bits (357), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 45/271 (16%), Positives = 105/271 (38%), Gaps = 25/271 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESRKHTPSSAI---QFL 137
             LA N+ +S+E      I+   + +    + ++T  HI + ++  K    S+    + +
Sbjct: 16  KGLAKNTVVSYERDLKSYIKYLQNVEQTKTFHEVTRLHIVNFLQYLKENGKSSKTLARHI 75

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPR 193
            S+R   ++ +R+  V  +P + +E P+ + +  +  + ++++            G + +
Sbjct: 76  ASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLSVDEVEALLQTPKMTSAFGIRDK 135

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGK 252
              E L  +GLR S+     ++ +   +  ++   K      + L     + +       
Sbjct: 136 AMLELLYATGLRVSELIALNLEDVHLTMGFVRCIGKGNKERIIPLGSLATEAIQKYIEKG 195

Query: 253 ----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
                     +  F+N+   +++   F    K  A +A + K  + H +R   AT   + 
Sbjct: 196 RRELMGKKVVDALFLNHHGNRLSRQGFWKILKRLAKEANIEKELTPHTLRHSFATHLLEN 255

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRL 331
           GA    +    G   +   + YT    + RL
Sbjct: 256 GADLRAVQEMLGHADISTTQIYTH-VSKTRL 285


>gi|300775316|ref|ZP_07085178.1| tyrosine recombinase XerD [Chryseobacterium gleum ATCC 35910]
 gi|300506056|gb|EFK37192.1| tyrosine recombinase XerD [Chryseobacterium gleum ATCC 35910]
          Length = 304

 Score =  142 bits (357), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 54/281 (19%), Positives = 97/281 (34%), Gaps = 26/281 (9%)

Query: 70  TLKWLISEYRKSAHW-GSLAVNSRISFESYFDQI-------IRKSGDFDYRKITTKHIRS 121
           T    I ++     +  + + N+  ++     ++       +   G         +    
Sbjct: 2   TWDEKIKDFEIFLRFERNFSENTLDAYVRDIKKLKDYAEEDLENVGPDSIAYENLQEYIF 61

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
            +  +K +  S  ++++S++  FK+ +  EY   NP   +E PK         +  D+ +
Sbjct: 62  NLSKQKFSERSQARWISSIKAFFKFLLEDEYREDNPAALLEGPKLGLYLPDTLSLPDINK 121

Query: 182 FKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII-TVE 236
             +        G + +   E L   GLR S+     + ++      IK    G     V 
Sbjct: 122 IIAAIEVNTDLGKRNQCIIEVLYGCGLRVSELIDLKISNINFKEQYIKVHGKGNKTRFVP 181

Query: 237 LPDGFMKLLAMTPIG-----------KETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284
           L D    LL                 ++T F+N+    M+     +  K    KAGVNK 
Sbjct: 182 LADYTADLLDSYIKEVRSKGKINKKYEDTLFLNSRGTSMSRVIVFLIIKELTDKAGVNKK 241

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            S H  R   AT     GA    +    G  ++   E YT 
Sbjct: 242 ISPHTFRHSFATHLLQNGADLRYIQEMLGHSSITTTEIYTH 282


>gi|212702793|ref|ZP_03310921.1| hypothetical protein DESPIG_00823 [Desulfovibrio piger ATCC 29098]
 gi|212673655|gb|EEB34138.1| hypothetical protein DESPIG_00823 [Desulfovibrio piger ATCC 29098]
          Length = 312

 Score =  142 bits (357), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 50/266 (18%), Positives = 92/266 (34%), Gaps = 22/266 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH------IRSGVESRKHTPSSAIQFLT 138
             L++ + +S+    +       + D    T+          + + +RK+   +  + L+
Sbjct: 33  RGLSMRTVVSYRQDLENFFLFLDELDAGDKTSLDEHDLFLYLAWLRARKNAGRTLARRLS 92

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRL 194
           ++R  F++ V +  +  NP   +E P+         +K +M +           G + R 
Sbjct: 93  ALRGFFEYTVEEGLLESNPASLLESPRLPQYLPEVLSKAEMDRLLQLPDMREKCGRRDRC 152

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-ITVELPDGFMKLLAMT----- 248
             E L  +GLR S+ C   V  +      +     G     V L    + LL        
Sbjct: 153 LLEMLYAAGLRVSEVCNLLVADVDMQRGLVLVSGKGAKDRLVPLHSLVLDLLQQWLSFWR 212

Query: 249 ---PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGAT 303
                     F+N   + ++        K  A  AG+ +S   H  R   AT   + GA 
Sbjct: 213 DDFSPQSRYLFLNRSGKGLSRQYVWKMVKKYALLAGIRRSISPHTFRHSFATHLLEGGAD 272

Query: 304 AHELMATYGWKTVDQAETYTK-GADR 328
              +    G   +   E YT   A+R
Sbjct: 273 LRAVQLLLGHADISATEIYTHVQAER 298


>gi|15802459|ref|NP_288485.1| putative integrase for prophage CP-933U [Escherichia coli O157:H7
           EDL933]
 gi|15832027|ref|NP_310800.1| integrase [Escherichia coli O157:H7 str. Sakai]
 gi|168765371|ref|ZP_02790378.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC4501]
 gi|168789398|ref|ZP_02814405.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC869]
 gi|168802960|ref|ZP_02827967.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC508]
 gi|217329608|ref|ZP_03445687.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. TW14588]
 gi|261226506|ref|ZP_05940787.1| putative integrase for prophage CP-933U [Escherichia coli O157:H7
           str. FRIK2000]
 gi|261254686|ref|ZP_05947219.1| putative integrase for prophage CP-933U [Escherichia coli O157:H7
           str. FRIK966]
 gi|12516149|gb|AAG57039.1|AE005423_1 putative integrase for prophage CP-933U [Escherichia coli O157:H7
           str. EDL933]
 gi|13362241|dbj|BAB36196.1| putative integrase [Escherichia coli O157:H7 str. Sakai]
 gi|189364882|gb|EDU83298.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC4501]
 gi|189371014|gb|EDU89430.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC869]
 gi|189375237|gb|EDU93653.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC508]
 gi|217317376|gb|EEC25805.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. TW14588]
 gi|320189647|gb|EFW64304.1| Putative integrase [Escherichia coli O157:H7 str. EC1212]
 gi|326340080|gb|EGD63885.1| Putative integrase [Escherichia coli O157:H7 str. 1044]
 gi|326346464|gb|EGD70200.1| Putative integrase [Escherichia coli O157:H7 str. 1125]
          Length = 340

 Score =  142 bits (357), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 60/330 (18%), Positives = 107/330 (32%), Gaps = 30/330 (9%)

Query: 6   RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
           +LPP V   +       Y   K   R        ES  + A    L     K E   + R
Sbjct: 12  KLPPKVYPNK-------YSVWKPTSR--------ESVTLTAIEDGLAALWKKYEETVNHR 56

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
            +  T   L  ++  SA++  L+  ++  +  +  +++   G      +  +HIR  ++ 
Sbjct: 57  DRAMTFGRLWEKFLASAYYSELSPRTQKDYLQHQKKLLAVFGKVLADSVKPEHIRRYMDK 116

Query: 126 RKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
           R   + + A    +SM  ++ W   + YV  NPC  V + K K       T ++ Q   S
Sbjct: 117 RGEQSKTQANHEKSSMSRVYSWGYERGYVKANPCAGVSKFKAKNRERYV-TDKEYQAVLS 175

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
                    +A E       R SD      + + N+   I+  KTG              
Sbjct: 176 VAPL--PVFIAMEIAYLCAARVSDVLSLKWEQIGNDGIFIQQGKTGKKQIKAWSPRLQAA 233

Query: 245 LAMTP--IGKETFFINNDKQKMNATQFSIWFKAKATKAG------VNKSAHGVRKFSATI 296
           +              N    +     F+  +      AG       + + H + K     
Sbjct: 234 IEKAKQLPTSAYVISNQYGNRYMYKGFNEMWVEARNHAGKISGILTDFTFHDL-KAKGIS 292

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326
             +   ++ +     G KT  Q   Y +  
Sbjct: 293 DYE--GSSRDKQLFSGHKTEGQVLIYDRKV 320


>gi|189459721|ref|ZP_03008506.1| hypothetical protein BACCOP_00349 [Bacteroides coprocola DSM 17136]
 gi|189433568|gb|EDV02553.1| hypothetical protein BACCOP_00349 [Bacteroides coprocola DSM 17136]
          Length = 312

 Score =  142 bits (357), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 55/284 (19%), Positives = 111/284 (39%), Gaps = 24/284 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIR---SGVESRK 127
           +I +Y++      SL+ N+  ++ +  D++       + DY ++T + +    +G+    
Sbjct: 10  IIIKYKQYLKLEKSLSENTVQAYLTDLDKLFAYLTLENIDYTQVTLQDLETFSAGLHDIG 69

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
             P S  + L+ +R  + + V  +Y+  +P   +E P+         + E++        
Sbjct: 70  IHPRSQARILSGIRSFYHFLVLDDYIQQDPTELLESPQIGKHLPDVLSVEEIDALIGSID 129

Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-VELPDGFM 242
               EG +     E L   GLR S+ C   +  L  +   IK +  G+    V +    +
Sbjct: 130 RSTREGQRNCAILETLYSCGLRVSELCNLKISDLYFDEGFIKVEGKGSKQRLVPISPRAI 189

Query: 243 KLLA----------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290
             +           + P  ++  FI+   + ++        K  A+  G+ K  S H  R
Sbjct: 190 NEIRNYFIERNQGLIKPEYEDFVFISRFGKNISRIMVFHIIKELASLIGLKKKISPHTFR 249

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIK 334
              AT   + GA    +    G +++   E YT   D+ RL  +
Sbjct: 250 HSFATHLLEGGANLRAIQCMLGHESIGTTEIYTH-IDKNRLRQE 292


>gi|109900015|ref|YP_663270.1| tyrosine recombinase XerD [Pseudoalteromonas atlantica T6c]
 gi|109702296|gb|ABG42216.1| tyrosine recombinase XerD [Pseudoalteromonas atlantica T6c]
          Length = 301

 Score =  142 bits (357), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 51/287 (17%), Positives = 101/287 (35%), Gaps = 32/287 (11%)

Query: 85  GSLAVNSRISFESYF----DQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFL 137
             L+ N+  ++ S      D +  +S   +   I T+ I   +  R     +  S+ + L
Sbjct: 22  KGLSENTLDAYRSDLTKFSDFLRAQSSVVNLLDIQTEDINQYMAERFDNGLSERSSARCL 81

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPR 193
           +S+R    + +       +P   ++ PK      +  +++ +    +          + +
Sbjct: 82  SSLRRFSGYMLAHGLREDDPVSRMQNPKLSKPLPKTLSEQQVDDLLNAPQTDDPIQLRDK 141

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLL------- 245
              E L  +GLR ++     V  L  +   ++ T K      V L +  +  L       
Sbjct: 142 AMLEVLYATGLRVTELVTLRVGQLSISQGVVRVTGKGNKERLVPLGEEALDWLTTYMKEA 201

Query: 246 --AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAG 301
             A+     +  F +N    M    F    K  AT+A +  + S H +R   AT   + G
Sbjct: 202 RGALLRNESDVLFPSNRGTIMTRQTFWHRIKFHATQANITSDLSPHTLRHAFATHLLNHG 261

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
           A    +    G   +   + YT  A         + R+  +V +  P
Sbjct: 262 ADLRVVQMLLGHSDLSTTQIYTHVA---------TARLQELVAAHHP 299


>gi|254693685|ref|ZP_05155513.1| Phage integrase [Brucella abortus bv. 3 str. Tulya]
 gi|261213956|ref|ZP_05928237.1| conserved hypothetical protein [Brucella abortus bv. 3 str. Tulya]
 gi|260915563|gb|EEX82424.1| conserved hypothetical protein [Brucella abortus bv. 3 str. Tulya]
          Length = 260

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 46/251 (18%), Positives = 82/251 (32%), Gaps = 13/251 (5%)

Query: 104 RKSGDFDYRKIT-----TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVR-QEYVAINP 157
           +K GD    +          IR         P +A   +  +  +  +AV     ++ NP
Sbjct: 9   KKFGDLSIAQFDLPQKIRPVIRKWRGEFADKPRTADYGMQVLSRVLSYAVDPLGKISQNP 68

Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217
           C  +++  +       WT +D+ + K+  S   +   A +   ++GLR  D  R    H+
Sbjct: 69  CEGIKQLYKNDRAAIIWTDQDIARLKTKCSP--EVAWAVDLAAHTGLRAGDLLRLSWSHI 126

Query: 218 QNNIFSIKTQKTG--TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKA 275
            +N   + T K+       + L      LL   P        N  K       F   F  
Sbjct: 127 TDNAIILPTGKSRHTKEAVIPLYAELRALLQTIPRRSPIVLTNTRKAPWTVNGFGSSFSD 186

Query: 276 KATKAGV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
              +A +   +   H  R  +AT    AG +   +    GW+         +   R    
Sbjct: 187 CREEAKLGDRDLHFHDFRGTAATKFYIAGLSERVIAEIMGWEEETVRNIIRRYVSRTAAI 246

Query: 333 IKNSRRISSVV 343
               ++I    
Sbjct: 247 EATIKQIDEAR 257


>gi|153805793|ref|ZP_01958461.1| hypothetical protein BACCAC_00029 [Bacteroides caccae ATCC 43185]
 gi|149130470|gb|EDM21676.1| hypothetical protein BACCAC_00029 [Bacteroides caccae ATCC 43185]
          Length = 316

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 50/275 (18%), Positives = 100/275 (36%), Gaps = 24/275 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVESRK 127
           +I +Y++      SL+ N+  ++ +  D++     +      +      +   +G+    
Sbjct: 16  IIRKYQQYLKLEKSLSPNTLEAYLTDLDKLMSFLTLEGINVLEVCLSDLQRFTAGLHDIG 75

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
             P S  + L+ ++  F++ +  +Y+  +P   +E PK   +     T E++ +  S   
Sbjct: 76  IHPRSQARILSGIKSFFRFLLMADYLEADPSELLEGPKIGFKLPEVLTVEEIDRIISAVD 135

Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-VELPDGFM 242
               EG + R   E L   GLR S+     +  L  +   IK +  G+    V +    +
Sbjct: 136 RSKAEGQRNRAILETLYSCGLRVSELVNLKLSDLYFDEGFIKVEGKGSKQRLVPISPRAI 195

Query: 243 KLLAMTPIG-----------KETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGV 289
             + +                  F      + ++        K  A  AG+  N S H  
Sbjct: 196 NEIKLYFTDRNRIEVKKEYEDFVFVSQRRGKGLSRIMIFHMIKELAQTAGIIKNISPHTF 255

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           R   AT   + GA    +    G +++   E YT 
Sbjct: 256 RHSFATHLLEGGANLRAIQCMLGHESIATTEIYTH 290


>gi|222151393|ref|YP_002560549.1| site-specific tyrosine recombinase XerD [Macrococcus caseolyticus
           JCSC5402]
 gi|222120518|dbj|BAH17853.1| site-specific tyrosine recombinase XerD [Macrococcus caseolyticus
           JCSC5402]
          Length = 295

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 45/263 (17%), Positives = 95/263 (36%), Gaps = 23/263 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH------IRSGVESRKHTPSSAIQFLT 138
             L+ N+  ++    +   +   +     I              ++    +  +  +   
Sbjct: 16  KGLSENTIAAYRRDLNHYKKFLEESHIGSIDNIDRFTISLFLGKLKDDGKSSKTLARVTA 75

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRL 194
           S+R   ++A+R++Y   +P + +E PK + +     T E++  F S        G + + 
Sbjct: 76  SVRGFHQFALREKYAVKDPTIILEPPKFERKLPGILTVEEVDIFLSSPDTSKVTGRRDQA 135

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAMTPIGK- 252
             E L  +G+R S+     V  +   +  +K T K      V +    +KL+        
Sbjct: 136 MLELLYATGMRVSELINLDVADVNTIMGFVKVTGKGNKERIVPIGTHMIKLMDAYIANTR 195

Query: 253 ---------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301
                    ++ F+N   ++M    F    K    ++G+ K  + H +R   AT   + G
Sbjct: 196 HKMLKKEMTDSLFLNFHGKRMTRQGFWKIMKQVQAESGIQKKLTPHTLRHSFATHLLENG 255

Query: 302 ATAHELMATYGWKTVDQAETYTK 324
           A    +    G   +   + YT 
Sbjct: 256 ADLRAVQEMLGHADISSTQLYTH 278


>gi|47568147|ref|ZP_00238851.1| integrase/recombinase XerD [Bacillus cereus G9241]
 gi|222097540|ref|YP_002531597.1| site-specific tyrosine recombinase xerd [Bacillus cereus Q1]
 gi|47555137|gb|EAL13484.1| integrase/recombinase XerD [Bacillus cereus G9241]
 gi|221241598|gb|ACM14308.1| integrase/recombinase (tyrosine recombinase) [Bacillus cereus Q1]
          Length = 285

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 44/271 (16%), Positives = 104/271 (38%), Gaps = 25/271 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVESRKHTPSSAI---QFL 137
             LA N+ +S+E      ++   +      + ++T  HI + ++  K    S+    + +
Sbjct: 5   KGLAKNTVVSYERDLKSYVKYLQNVEQAKSFHEVTRLHIVNFLQHLKENGKSSKTLARHI 64

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPR 193
            S+R   ++ +R+  V  +P + +E P+ + +  +  + ++++            G + +
Sbjct: 65  ASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLSVDEVEALLQTPKMTSAFGVRDK 124

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGK 252
              E L  +GLR S+     ++ +   +  ++   K      + L     + +       
Sbjct: 125 AMLELLYATGLRVSELIALNLEDVHLTMGFVRCIGKGNKERIIPLGSLATEAIQKYIEKG 184

Query: 253 ----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
                     +  F+N+   +++   F    K  A +A + K  + H +R   AT   + 
Sbjct: 185 RRELMGKKVVDALFLNHHGNRLSRQGFWKILKRLAKEANIEKELTPHTLRHSFATHLLEN 244

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRL 331
           GA    +    G   +   + YT    + RL
Sbjct: 245 GADLRAVQEMLGHADISTTQIYTH-VSKTRL 274


>gi|52080868|ref|YP_079659.1| site-specific tyrosine recombinase XerD [Bacillus licheniformis
           ATCC 14580]
 gi|52786240|ref|YP_092069.1| site-specific tyrosine recombinase XerD [Bacillus licheniformis
           ATCC 14580]
 gi|319645175|ref|ZP_07999408.1| RipX protein [Bacillus sp. BT1B_CT2]
 gi|52004079|gb|AAU24021.1| site-specific integrase/recombinase [Bacillus licheniformis ATCC
           14580]
 gi|52348742|gb|AAU41376.1| RipX [Bacillus licheniformis ATCC 14580]
 gi|317392984|gb|EFV73778.1| RipX protein [Bacillus sp. BT1B_CT2]
          Length = 296

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 45/264 (17%), Positives = 104/264 (39%), Gaps = 24/264 (9%)

Query: 85  GSLAVNSRISFESYFD----QIIRKSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFL 137
             L+ N+ +S+E   +     +  +     + ++T  HI   ++  K    +  +  + L
Sbjct: 16  RGLSHNTVVSYERDLNSYAAYLEEQEQLSSFDQVTRLHIIQFLKHLKDAGKSGKTVARHL 75

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPR 193
            S+R   ++ +R++  A +P + +E  K +    +  + ++++            G + +
Sbjct: 76  ASIRSFHQFLLREKVTAQDPSVHIESQKTERTLPKVLSLQEVETLLDTPKLTGPFGYRDK 135

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLL------- 245
              E L  +G+R S+     +  +  ++  I+   K      V L +     +       
Sbjct: 136 AMLELLYATGIRVSEMIALKLSDVHLSMGFIRCFGKGRKERIVPLGEAASHAVGEYLSKA 195

Query: 246 ---AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
               +    ++  F+N+  ++M+   F    K  A +AG+NK  + H +R   AT   + 
Sbjct: 196 RGKLLKKNTEDALFLNHHGRQMSRQGFWKNLKKIALEAGINKELTPHTLRHSFATHLLEN 255

Query: 301 GATAHELMATYGWKTVDQAETYTK 324
           GA    +    G   +   + YT 
Sbjct: 256 GADLRAVQEMLGHADISTTQIYTH 279


>gi|149920280|ref|ZP_01908751.1| integrase/recombinase XerD [Plesiocystis pacifica SIR-1]
 gi|149818867|gb|EDM78307.1| integrase/recombinase XerD [Plesiocystis pacifica SIR-1]
          Length = 302

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 49/280 (17%), Positives = 106/280 (37%), Gaps = 27/280 (9%)

Query: 71  LKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126
           L+ L+ +Y +      +L+ N+  ++ +   +++      G     +++   +   + S 
Sbjct: 7   LEDLVEDYLQHLKVERNLSPNTLEAYGNDLRRLLDALSGAGVERASQVSPAALLGFLRSL 66

Query: 127 KH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
                +  S  +   ++R LF+W   ++ V ++P   +  PK   +     ++E++ +  
Sbjct: 67  AEAGLSARSQARRWVAVRGLFRWLRSEQLVEVDPTQGIALPKAVNKLPELLSREEVVRLI 126

Query: 184 SF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELP 238
           +        G +     EF+  +G R S++C   +  L  +    + T K      V L 
Sbjct: 127 AAPGVDTPLGLRDTALLEFMYATGCRVSEACDLELSSLHLDQGLVVLTGKGSKQRMVPLG 186

Query: 239 D------------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284
           D            G  +L+A  P      F+N    +++        +  A  AG+ +  
Sbjct: 187 DCALVALLAWLEEGRPELVARAPREA-HVFVNKRGSRLSRQGCFFRLRQHAVSAGITRDI 245

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           S H +R   AT   + GA    +    G   +   + YT 
Sbjct: 246 SPHKLRHSFATHLIEGGADLRAVQTLLGHADISTTQVYTH 285


>gi|149910171|ref|ZP_01898817.1| tyrosine recombinase [Moritella sp. PE36]
 gi|149806757|gb|EDM66721.1| tyrosine recombinase [Moritella sp. PE36]
          Length = 296

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 45/287 (15%), Positives = 98/287 (34%), Gaps = 24/287 (8%)

Query: 74  LISEYRKSA-HWGSLAVNSRISFESYFDQ-----IIRKSGDFDYRKITTKHIRSGVESRK 127
           +I ++     H   L+ N+  S+ +  +Q     +  K       ++  +   +      
Sbjct: 6   IIEQFLDIMWHERGLSDNTLSSYRNDLNQYHHWLVQHKQQLLTVDRLEIQAFMASRFDLG 65

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-- 185
           +  SS  + L+++R  +++  R++    +P   +  PK         ++ ++    +   
Sbjct: 66  YKASSTARQLSAIRRFYQYLYREQMRDDDPTALLISPKLPQRLPDDLSEAEVNALLAAPE 125

Query: 186 --WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFM 242
                  + +   E L  +GLR S+     ++ +      ++ T K G    V + +  +
Sbjct: 126 LDDPIQLRDKAMMEVLYATGLRVSELVGLSMESVSLRQGLVRVTGKGGKERLVPMGEEAV 185

Query: 243 KLLAMTPIGK----------ETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVR 290
                               +  F +     M    F    K  +  AG+  + S H +R
Sbjct: 186 YWTERFIAEGRATLLKGLTSDVVFPSRRGNFMTRQTFWHRLKHYSQVAGITTHLSPHTLR 245

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
              AT   + GA    +    G   +   + YT  A   RL   +S 
Sbjct: 246 HAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVAT-ARLEQLHSE 291


>gi|319775822|ref|YP_004138310.1| Site-specific recombinase XerD [Haemophilus influenzae F3047]
 gi|329123666|ref|ZP_08252226.1| tyrosine recombinase XerD [Haemophilus aegyptius ATCC 11116]
 gi|317450413|emb|CBY86629.1| Site-specific recombinase XerD [Haemophilus influenzae F3047]
 gi|327469865|gb|EGF15330.1| tyrosine recombinase XerD [Haemophilus aegyptius ATCC 11116]
          Length = 297

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 47/284 (16%), Positives = 97/284 (34%), Gaps = 27/284 (9%)

Query: 73  WLISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVES 125
            LI  +     W    L+ N+  S+      +                +  +        
Sbjct: 5   ALIDLFLNEY-WIEKGLSENTVQSYRLDLTALCDWLDKNGLSLETLDAVDLQGFLGERLE 63

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS- 184
           + +  +S  + L++MR LF++  R++Y   +P   +  PK  +   +  T++ +    + 
Sbjct: 64  KGYKATSTARMLSAMRKLFQYLYREKYRVDDPSAVLSSPKLPSRLPKYLTEQQVSDLLNT 123

Query: 185 ---FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240
                    + +   E L  +GLR ++     ++++      ++   K      V + + 
Sbjct: 124 PDVEVPLELRDKAMLELLYATGLRVTELVSLTIENMSVQQGVVRVIGKGNKERIVPMGEE 183

Query: 241 FMKL-----LAMTPI-----GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAH 287
                    L   P+       +  F +   Q+M    F    K  A  A ++    S H
Sbjct: 184 AAYWVRQFMLYGRPVLLNGQSSDVVFPSQRAQQMTRQTFWHRVKHYAILADIDAEALSPH 243

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            +R   AT   + GA    +    G   +   + YT  A + RL
Sbjct: 244 VLRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVA-KERL 286


>gi|332169022|gb|AEE18277.1| tyrosine recombinase XerD [Krokinobacter diaphorus 4H-3-7-5]
          Length = 300

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 48/272 (17%), Positives = 93/272 (34%), Gaps = 25/272 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVE--SRKHTPSSAIQFLT 138
             L+ N+  ++     ++ R     D       IT   I+  +   +++    S  + ++
Sbjct: 18  RGLSENTIDNYARDLKKLTRHLEQLDSAPDPITITKDDIQDFIYTIAKEVQARSQARIIS 77

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRL 194
            ++  F + + ++Y   NP   +E P+   +      +E++    +       +G + R 
Sbjct: 78  GLKGFFNYLIFEDYRKDNPLDLIESPRLGRKLPDTLAEEEIDALITAIDLSNPQGERNRA 137

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPD-----------GFM 242
             E L   GLR ++     +  L      I    K      V + +              
Sbjct: 138 MLETLYSCGLRVTELISLKLSDLYFEEGFINVIGKGDKQRFVPISEHTQKYINIYRNEIR 197

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADA 300
               + P   +  F+N   +++         K  A KAG+ KS   H  R   AT     
Sbjct: 198 THTDVKPEYVDILFLNRRGRQLTRAMIFTIIKDLAVKAGIKKSISPHTFRHSFATHLLQN 257

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           GA    +    G +++   E Y    DR  L 
Sbjct: 258 GADLRSIQQMLGHESITTTEIYMH-VDRSDLA 288


>gi|160876615|ref|YP_001555931.1| integrase family protein [Shewanella baltica OS195]
 gi|160862137|gb|ABX50671.1| integrase family protein [Shewanella baltica OS195]
 gi|315268811|gb|ADT95664.1| integrase family protein [Shewanella baltica OS678]
          Length = 338

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 62/336 (18%), Positives = 107/336 (31%), Gaps = 33/336 (9%)

Query: 7   LPPFVTKERTRHGKIIYYF-RKGHGRRIRLPYPHES-TFIPAYMSALTGSTPKREYINSP 64
           LPP V   R R GK I Y  ++ +  ++             AY  A+             
Sbjct: 11  LPPSVYIHR-RAGKPICYVIKRPNSTKVLCKITASKAEVWTAYEKAVA-----------E 58

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
                T+  L  EY  SA++  LA  ++   +   +   +  G     +I   HIR  ++
Sbjct: 59  LSLEYTVNRLAMEYLDSANFKELAPRTQRDRDRELNVFSKVFGSMLPDRIEPHHIRRYMD 118

Query: 125 SRK-HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
            R   + + A   L +  V+F W   +     NP   +++ K K    R  T  +     
Sbjct: 119 LRGQSSKTQANHELAAASVMFAWGYERGRCKSNPAKGIKKFKVKAR-DRYITDSEFDALL 177

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
           S      + ++A E       R  D  +     +  +   I+  KTG            K
Sbjct: 178 SCAEI--RLKIACEISYLCAARQGDVLQLTWSQVNEDGLFIQQGKTGKKQIKAWSPRLRK 235

Query: 244 LLAMTPIGKE-----TFFINNDKQKMNATQFSIWFKAKATKAGVNK-------SAHGVRK 291
            +A                 +   K+        +K    K  ++        + H + K
Sbjct: 236 AIAEARTLHSGIASIYVINKHPSGKLTQDGLRSAWKRAMAKMEMDYPQIERTFTFHDI-K 294

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
                  +   T  E     G KT+ Q  TY +  +
Sbjct: 295 AKGVSDFE--GTLSEKQQYSGHKTLAQVNTYDRKVE 328


>gi|227328397|ref|ZP_03832421.1| site-specific tyrosine recombinase XerD [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 299

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 44/280 (15%), Positives = 98/280 (35%), Gaps = 26/280 (9%)

Query: 72  KWLISEYRKSAHW--GSLAVNSRISFESYFDQIIR-----KSGDFDYRKITTKHIRSGVE 124
           + LI ++   A W   +LA N+  S+      +       ++G    + +  +   +   
Sbjct: 6   QALIEQFL-DALWLERNLAENTLASYRLDLRTLAEWVAHHENGLLQAQSLDLQAFLADRV 64

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
              +  +S+ + L++MR  F++  R++  + +P   +  PK      +  ++  +    +
Sbjct: 65  EGGYKATSSARLLSAMRRFFQYLYREKLRSDDPSAVLSSPKLPQRLPKDLSEAQVDALLN 124

Query: 185 F----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPD 239
                     + +   E L  +GLR S+     +  +      ++   K      V L +
Sbjct: 125 APSIEQPLELRDKAMLEVLYATGLRVSELVSLTMSDVSLRQGVVRVLGKGNKERLVPLGE 184

Query: 240 GFMKLLAMTPIGKETFFIN----------NDKQKMNATQFSIWFKAKATKAGVN---KSA 286
             +  +         + +N          +  ++M    F    K  A  A ++    S 
Sbjct: 185 EAVYWIEYYLEHGRPWLLNGQTLDVLFPSSRARQMTRQTFWHRIKHYAVLASIDSEKLSP 244

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           H +R   AT   + GA    +    G   +   + YT  A
Sbjct: 245 HVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA 284


>gi|228916729|ref|ZP_04080294.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228935411|ref|ZP_04098229.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228824163|gb|EEM69977.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228842916|gb|EEM87999.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 296

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 45/271 (16%), Positives = 103/271 (38%), Gaps = 25/271 (9%)

Query: 85  GSLAVNSRISFES----YFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI---QFL 137
             LA N+ +S+E     Y   + +      + ++T  HI + ++  K    S+    + +
Sbjct: 16  KGLAKNTVVSYERDLKSYVKYLQKVEQAKSFHEVTRLHIVNFLQHLKENGKSSKTLARHI 75

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPR 193
            S+R   ++ +R+  V  +P + +E P+ + +  +  +  +++            G + +
Sbjct: 76  ASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLSVNEVEALLQTPKMTSAFGVRDK 135

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAMTPIGK 252
              E L  +GLR S+     ++ +   +  ++   K      + L     + +       
Sbjct: 136 AMLELLYATGLRVSELIALNLEDVHLTMGFVRCVGKGNKERIIPLGSLATEAIQKYIEKG 195

Query: 253 ----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
                     +  F+N+   +++   F    K  A +A + K  + H +R   AT   + 
Sbjct: 196 RRELMGKKVVDALFLNHHGNRLSRQGFWKILKRLAKEANIEKELTPHTLRHSFATHLLEN 255

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRL 331
           GA    +    G   +   + YT    + RL
Sbjct: 256 GADLRAVQEMLGHADISTTQIYTH-VSKTRL 285


>gi|229550039|ref|ZP_04438764.1| site-specific DNA tyrosine recombinase, XerD [Enterococcus faecalis
           ATCC 29200]
 gi|255972820|ref|ZP_05423406.1| phage integrase [Enterococcus faecalis T1]
 gi|257089862|ref|ZP_05584223.1| phage integrase [Enterococcus faecalis CH188]
 gi|257422642|ref|ZP_05599632.1| phage integrase [Enterococcus faecalis X98]
 gi|312951470|ref|ZP_07770366.1| tyrosine recombinase XerD [Enterococcus faecalis TX0102]
 gi|229304845|gb|EEN70841.1| site-specific DNA tyrosine recombinase, XerD [Enterococcus faecalis
           ATCC 29200]
 gi|255963838|gb|EET96314.1| phage integrase [Enterococcus faecalis T1]
 gi|256998674|gb|EEU85194.1| phage integrase [Enterococcus faecalis CH188]
 gi|257164466|gb|EEU94426.1| phage integrase [Enterococcus faecalis X98]
 gi|310630436|gb|EFQ13719.1| tyrosine recombinase XerD [Enterococcus faecalis TX0102]
 gi|315152507|gb|EFT96523.1| tyrosine recombinase XerD [Enterococcus faecalis TX0031]
 gi|315155785|gb|EFT99801.1| tyrosine recombinase XerD [Enterococcus faecalis TX0043]
 gi|315158048|gb|EFU02065.1| tyrosine recombinase XerD [Enterococcus faecalis TX0312]
 gi|315577730|gb|EFU89921.1| tyrosine recombinase XerD [Enterococcus faecalis TX0630]
 gi|327535109|gb|AEA93943.1| tyrosine recombinase XerD [Enterococcus faecalis OG1RF]
          Length = 296

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 47/274 (17%), Positives = 107/274 (39%), Gaps = 27/274 (9%)

Query: 85  GSLAVNSRISFESYFDQ---IIRKSG----DFDYRKITTKHIRSGVESRKHTPSSAIQFL 137
             L+ N+R S+E    +    +++ G    D   R + T+ ++S  E ++ + +S I+ +
Sbjct: 16  RGLSNNTRRSYERDLKKYVAFLQEQGLHSWDEVDRYMITEFLQSLHEEQQAS-ASVIRMI 74

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPR 193
           +S+R   ++  ++     NP   ++ PK+  +     + +++ +           G + R
Sbjct: 75  SSLRGFHQFLRQERLSEHNPMQHIDSPKKVQKLPSTLSVDEVTRLIETPDTSKPLGMRNR 134

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMT---- 248
              E +  +GLR S+     +  L  +I  ++T  K      + L D  ++ +       
Sbjct: 135 AILEVMYATGLRVSELIEIKLGDLHLSIGLLQTIGKGDKERIIPLGDYAIQWIERYMNEA 194

Query: 249 -------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
                     +   F+N+  + ++        K    +A + K  + H +R   AT   +
Sbjct: 195 RPQLIKNHPNETHLFVNHHGEPLSRQGIWKNLKQIVREARIEKNITPHTLRHSFATHLLE 254

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
            GA    +    G   +   + YT    + R+  
Sbjct: 255 NGADLRIVQELLGHADISTTQIYTH-ITKQRMAD 287


>gi|254508834|ref|ZP_05120944.1| tyrosine recombinase XerD [Vibrio parahaemolyticus 16]
 gi|219548220|gb|EED25235.1| tyrosine recombinase XerD [Vibrio parahaemolyticus 16]
          Length = 298

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 45/280 (16%), Positives = 104/280 (37%), Gaps = 26/280 (9%)

Query: 72  KWLISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVE 124
           + L+ ++   A W    L+ N+  S+ +   ++++     +YR         +  ++ + 
Sbjct: 5   QGLVEQFL-DAMWMERGLSENTLASYRNDLSKLLQWMSKHNYRLDFISLSGLQEYQTWLA 63

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
              +  +S  + L+++R LF++  R++  A +P   +  PK      +  ++  +     
Sbjct: 64  DEGYKQTSRARMLSAIRRLFQYLHREKIRADDPSALLVSPKLPKRLPKDLSEAQVDALLD 123

Query: 185 FWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPD 239
                     + +   E L  +GLR ++     ++++      ++ T K G    V + +
Sbjct: 124 APDPNDPMELRDKAMLELLYATGLRVTELVSLTMENISLRQGVVRVTGKGGKERLVPMGE 183

Query: 240 GFMKLLAMTPIGK----------ETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSA 286
             +  +                 +  F +   ++M    F    K  A  AG++    S 
Sbjct: 184 NAVDWIETFLEQGRSELLGENTSDVVFPSKRARQMTRQTFWHRIKHYAVIAGIDSEKLSP 243

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           H +R   AT   + GA    +    G   +   + YT  A
Sbjct: 244 HVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVA 283


>gi|148981819|ref|ZP_01816536.1| site-specific tyrosine recombinase XerD [Vibrionales bacterium
           SWAT-3]
 gi|145960727|gb|EDK26067.1| site-specific tyrosine recombinase XerD [Vibrionales bacterium
           SWAT-3]
          Length = 304

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 46/278 (16%), Positives = 102/278 (36%), Gaps = 26/278 (9%)

Query: 74  LISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVESR 126
           L+ ++   A W    L+ N+ +S+ +   +++      +YR         +  +S +   
Sbjct: 13  LVEQFL-DAMWMERGLSENTLVSYRTDLSKLLTWMEQNNYRLDFISLSGLQDYQSWLVDA 71

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185
               +S  + L+++R LF++  R++  A +P   +  PK      +  ++E +       
Sbjct: 72  DFKQTSRARMLSAIRRLFQYLHREKVRADDPSALLISPKLPQRLPKDLSEEQVDALLDAP 131

Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241
                   + +   E L  +GLR ++     ++++      ++   K G    V + +  
Sbjct: 132 DPNDPIELRDKAMLELLYATGLRVTELVSLTMENISLRQGVVRVIGKGGKERLVPMGENA 191

Query: 242 MKLLAMTPIGK----------ETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288
           +  +                 +  F +   ++M    F    K  A  AG++    S H 
Sbjct: 192 VDWIESFIEQGRPQLLGENSSDVVFPSKRAKQMTRQTFWYRIKHYAVIAGIDTELLSPHV 251

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           +R   AT   + GA    +    G   +   + YT  A
Sbjct: 252 LRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVA 289


>gi|167756895|ref|ZP_02429022.1| hypothetical protein CLORAM_02444 [Clostridium ramosum DSM 1402]
 gi|167703070|gb|EDS17649.1| hypothetical protein CLORAM_02444 [Clostridium ramosum DSM 1402]
          Length = 302

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 46/286 (16%), Positives = 94/286 (32%), Gaps = 33/286 (11%)

Query: 68  PTTLKWLISEYRKSAHWGS-LAVNSRISFESYFDQI--------IRKSGDFDYRKITTKH 118
            TTL     +Y     +    A  +  S++   D          I    D  Y  +  + 
Sbjct: 2   KTTLDKYFRQYLDYLQYQRHYADKTIESYKRQIDHFKQFLIEESIDDYNDVSYAML--RG 59

Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
             + +  +  + ++    L+++R  F + +++E +  NP L +E  K           E+
Sbjct: 60  YLTKLYEKNLSKTTINHKLSALRSFFNYLLKEELINDNPFLLIESQKVAKRNPDFLFPEE 119

Query: 179 M----QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTII 233
           +       ++    G + +   E +  SGLRCS+     + ++  N +      K     
Sbjct: 120 ILGLLDSIETKDDLGIRNKAMMELMYASGLRCSEVVNLQLSNIDFNQMVLFIHGKGNKDR 179

Query: 234 TVELPD-----------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIW----FKAKAT 278
            V   D              + L +   G    F+N     +             +   +
Sbjct: 180 YVPFHDYAGEWLIKYIQEARENLMIKNEGHNFVFVNKFGNPLTNRGVENIVDRIMRLYDS 239

Query: 279 KAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              ++   H +R   AT   +AGA    +    G + +   + YT 
Sbjct: 240 TKKIH--PHTIRHSFATHLLNAGADIRTVQELLGHENLSTTQIYTH 283


>gi|212636945|ref|YP_002313470.1| Phage integrase:Phage integrase,SAM-like protein [Shewanella
           piezotolerans WP3]
 gi|212558429|gb|ACJ30883.1| Phage integrase:Phage integrase,SAM-like protein [Shewanella
           piezotolerans WP3]
          Length = 300

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 46/275 (16%), Positives = 98/275 (35%), Gaps = 23/275 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYR-----KITTKHIRSGVESRKHTPSSAIQFLTS 139
             L+ N+  ++ +      R       +     +   +   +    +    +S+ + ++S
Sbjct: 22  KGLSDNTLSAYRTDLRHFDRHQQLKGLKLVESSQFDVRDYLATRFDKGFAKTSSARMMSS 81

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK----SFWSEGSQPRLA 195
           +R  F + V  + ++ +P   +E PK   +     +++D+ +      +      + +  
Sbjct: 82  LRRFFGYLVVNKQISTDPMALLESPKLARKLPDSLSEDDIDRLLSEPQADDPIECRDKAM 141

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPD----------GFMKL 244
            E L  +GLR S+     ++ L      ++   K G    V L +           F ++
Sbjct: 142 LELLYATGLRVSELVGLTMEQLSLRQGLVRIVGKGGKERLVPLGELAVGEVENYLKFARV 201

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGA 302
             +     +  F +   Q+M    F    K  A +A +    S H +R   AT   + GA
Sbjct: 202 ELLKGKQSDVLFPSKRAQQMTRQTFWHRIKLYALRANISTELSPHTLRHAFATHLLNHGA 261

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
               +    G   +   + YT  A   RL   +S 
Sbjct: 262 DLRVVQLLLGHSDLSTTQIYTHVAT-ARLASLHSE 295


>gi|311745586|ref|ZP_07719371.1| tyrosine recombinase XerD [Algoriphagus sp. PR1]
 gi|126578148|gb|EAZ82368.1| tyrosine recombinase XerD [Algoriphagus sp. PR1]
          Length = 301

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 51/281 (18%), Positives = 108/281 (38%), Gaps = 26/281 (9%)

Query: 70  TLKWLISEYRKSAHW-GSLAVNSRISFESYFDQI----IRKSGDFDYRKITTKHIRSGVE 124
           T +  I ++R       SL+ NS  ++    +++     +   D +   +  +H+R  V 
Sbjct: 4   TWENHIKQFRHYLKLERSLSENSIEAYTRDVEKLAAYSSKNFPDKNPLNLELEHLRKFVN 63

Query: 125 SRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
                  +  +  + ++ ++  +++ + ++ +  +P   +E PK   +     + +++ Q
Sbjct: 64  ELAQLEISDYTQARIISGIKAFYRFLMYEDKITEDPAQLLEAPKLGRKLPDTLSYQEIVQ 123

Query: 182 FKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE 236
                     EG + R   E L  SGLR S+        +  +I  ++   K      V 
Sbjct: 124 LLEAIPLGEPEGHRNRAMLEMLYSSGLRVSELIELKKGQIFEDIGFLRVIGKGNKERLVP 183

Query: 237 LPDGFMKLL-----------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284
           +    +K L           ++    +E  F+N   +K++     +  K  A  AG+ K 
Sbjct: 184 IGKDALKYLNIYKDEVRVHQSIAKGHEEFVFLNRRGKKLSRVMIFLIIKKTAELAGIEKN 243

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            S H  R   AT   + GA    +    G +++   E YT 
Sbjct: 244 ISPHTFRHSFATHLIEGGADLRAVQEMLGHESITTTEIYTH 284


>gi|119478678|ref|ZP_01618568.1| tyrosine recombinase [marine gamma proteobacterium HTCC2143]
 gi|119448404|gb|EAW29656.1| tyrosine recombinase [marine gamma proteobacterium HTCC2143]
          Length = 300

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 51/280 (18%), Positives = 101/280 (36%), Gaps = 25/280 (8%)

Query: 74  LISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVESR 126
           LI  +     W    ++ N+  S+     Q  +   D        RK   +   +    R
Sbjct: 10  LIDAFL-DGIWMERGVSENTLSSYRQDLMQFNQWLLDQQTTMLAVRKNDIEAYLAFRLMR 68

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185
           K +  S  + L+ +R  +++ +R+  ++++P L ++ PK      +  +++D++   +  
Sbjct: 69  KISARSTARLLSCLRGFYQYQLRESRISLDPTLDIDSPKMGRPLPKSLSEQDVEALLNAP 128

Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-----EL 237
                   + +   E L  SGLR ++     V  L  N   ++    G+   +     E 
Sbjct: 129 DTDEPLELRDKAMLELLYASGLRVTELITLQVGQLSVNQGVVRVMGKGSKERLVPTGEEA 188

Query: 238 PDGFMKLLA------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGV 289
            D   + +       +     +T F +     M    F    K  A +AG+    S H +
Sbjct: 189 LDWLQRYMKDGRPALLGARMSDTMFPSRRGAVMTRQTFWYRIKIYAQRAGIRQSLSPHTL 248

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           R   AT   + GA    +    G   +   + YT  A   
Sbjct: 249 RHAFATHLINHGADLRVVQLLLGHSDLSTTQIYTHVAKER 288


>gi|218708546|ref|YP_002416167.1| site-specific tyrosine recombinase XerD [Vibrio splendidus LGP32]
 gi|218321565|emb|CAV17517.1| Tyrosine recombinase xerD [Vibrio splendidus LGP32]
          Length = 320

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 101/278 (36%), Gaps = 26/278 (9%)

Query: 74  LISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVESR 126
           L+ ++   A W    L+ N+ +S+ +   +++      +YR         +  +  +   
Sbjct: 29  LVEQFL-DAMWMERGLSENTLVSYRTDLSKLLTWMEKNNYRLDFISLSGLQDYQGWLADA 87

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185
               +S  + L+++R LF++  R++  A +P   +  PK      +  ++E +       
Sbjct: 88  DFKQTSRARMLSAIRRLFQYLHREKVRADDPSALLISPKLPKRLPKDLSEEQVDSLLEAP 147

Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241
                   + +   E L  +GLR ++     ++++      ++   K G    V + +  
Sbjct: 148 DPNDPIELRDKAMLELLYATGLRVTELVSLTMENISLRQGVVRVIGKGGKERLVPMGENA 207

Query: 242 MKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288
           +  +                 +  F +   ++M    F    K  +  AG++    S H 
Sbjct: 208 VDWIETFIEQGRPQLLGDNSSDVVFPSKRAKQMTRQTFWYRIKHYSVIAGIDTELLSPHV 267

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           +R   AT   + GA    +    G   +   + YT  A
Sbjct: 268 LRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVA 305


>gi|197105650|ref|YP_002131027.1| phage integrase [Phenylobacterium zucineum HLK1]
 gi|196479070|gb|ACG78598.1| phage integrase [Phenylobacterium zucineum HLK1]
          Length = 420

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 65/359 (18%), Positives = 104/359 (28%), Gaps = 43/359 (11%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR--- 65
            +V + +   G I  Y RK     +RLP             AL     +      P    
Sbjct: 2   KYVNRVQRPDGTIQLYLRKRGLPAVRLPDDLPP-------RALEQHVARLIRDLVPGGTG 54

Query: 66  KKPTTLKWLISEY-RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI-RSGV 123
               TL   +  Y  +S  + +LA +++  +     +     G       T   + R   
Sbjct: 55  ALRGTLAAAVRVYELESPEFRALAKSTQYEYRLILKEFDEDLGSVAISAFTPAFVDRLKT 114

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINP---CLSVERPKRKTEGIRPWTKEDMQ 180
              K    +A   L  ++ + K  +    +  +P      V RP+   E    W+ E  +
Sbjct: 115 SWAKRGYRAANLRLQVLKNVLKPCLVSGLLEKDPFPLVGQVRRPRALREPHLIWSDEMFE 174

Query: 181 QFKSFWSEGSQPRLAFEFLL--YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
                  +  +P LA    +  Y G R  D         QN  F   + K    + V   
Sbjct: 175 VVAQAALDAGKPGLARALAIARYVGARRGDLVAIPRTARQNGRFRFMSGKRRVRVDVAED 234

Query: 239 DGFMKLLAMTP-------------------IGKETFFINNDKQKMNATQFS-------IW 272
               + L  TP                       T   N   +       +         
Sbjct: 235 PQLTRWLERTPDAPEQRPRRGRKVPPGAEPAATTTIVYNVAGRPYTEDGLALELRKLLAR 294

Query: 273 FKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
             A+          HG+R       A AG +  E  A  G  +      Y + ADR+RL
Sbjct: 295 LHAQGRIDSDRYDLHGLRHTCGVELALAGCSDAEGAAMMGHGSPSSFVQYRRQADRVRL 353


>gi|188026224|ref|ZP_02961334.2| hypothetical protein PROSTU_03358 [Providencia stuartii ATCC 25827]
 gi|188022113|gb|EDU60153.1| hypothetical protein PROSTU_03358 [Providencia stuartii ATCC 25827]
          Length = 307

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 50/284 (17%), Positives = 100/284 (35%), Gaps = 27/284 (9%)

Query: 74  LISEYRKSAHW--GSLAVNSRISFE---SYFDQIIR--KSGDFDYRKITTKHIRSGVESR 126
           LI ++  +  W    LA N+  S+       D+ +   +      + I  +   +     
Sbjct: 16  LIEQFLDTI-WLEQDLAENTLASYRLDLQLLDKWLEANQLDLESVQSIDLQSFLAERIEG 74

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ----QF 182
            +  +S+ + L++MR LF++  R++    +P   +  PK      +  +++ ++      
Sbjct: 75  GYKAASSARLLSAMRRLFQYFYREKIRLDDPSAVIAAPKIPQRLPKDLSEQQVEDLLNAP 134

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDG- 240
            +      + +   E L   GLR S+        +      I+    G     + L +  
Sbjct: 135 ATEDPLELRDKAMLEVLYACGLRVSELVGLTFSDISLRQGVIRVVGKGNKERLIPLGEEA 194

Query: 241 -------FMKLLAMTPIGK--ETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288
                    +       GK  +  F +    KM    F    K  A  A ++    S H 
Sbjct: 195 IYWVEKYLEEGRPDLLNGKASDVLFPSKRGTKMTRQTFWHRIKHYAVIANIDSEALSPHV 254

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRL 331
           +R   AT   + GA    +    G   +   + YT  A +R+R+
Sbjct: 255 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRM 298


>gi|257784507|ref|YP_003179724.1| integrase family protein [Atopobium parvulum DSM 20469]
 gi|257473014|gb|ACV51133.1| integrase family protein [Atopobium parvulum DSM 20469]
          Length = 305

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 55/279 (19%), Positives = 106/279 (37%), Gaps = 27/279 (9%)

Query: 85  GSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVESRKHTPSSA---IQFLTS 139
            +L+ N+  S+++      +     + D  ++  K++R  +   K    SA    + L++
Sbjct: 22  RNLSENTLRSYQTDLLSFAQWCSRENVDLTQVDHKNLRLYLAYLKQAQYSAKTLNRHLSA 81

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLA 195
           +R  +KW  R++ +A +P L++  P+         T  D+ +           G + R  
Sbjct: 82  LRGFYKWMQREKLIATDPALALSNPRAPRNLPHTMTDSDVNRLLESCDVSTAAGLRDRAF 141

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVEL----PDGFMKLLA---- 246
            EFL  +G R S+     ++ +     +++   K      V L     +   K L     
Sbjct: 142 LEFLYATGARISEVATLRLEQVDLQNGTVRLFGKGSKERIVPLYESAIEWLKKYLRSSRP 201

Query: 247 ------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISA 298
                  T       FI+     M+A      F +  T AG++   S H +R   AT   
Sbjct: 202 TLLLKDKTGRVHSALFISVRGNNMSADSLRKVFSSYLTAAGLDSSLSPHAMRHTYATELL 261

Query: 299 DAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNS 336
             GA    +    G +++   + YT    DR++   K +
Sbjct: 262 GGGADLRIVQELLGHESLSTTQVYTHLSVDRLKEAAKAA 300


>gi|221310269|ref|ZP_03592116.1| site-specific tyrosine recombinase XerD [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221314592|ref|ZP_03596397.1| site-specific tyrosine recombinase XerD [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221319515|ref|ZP_03600809.1| site-specific tyrosine recombinase XerD [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221323791|ref|ZP_03605085.1| site-specific tyrosine recombinase XerD [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|255767509|ref|NP_390232.2| site-specific tyrosine recombinase XerD [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|321311827|ref|YP_004204114.1| site-specific tyrosine recombinase XerD [Bacillus subtilis BSn5]
 gi|251757430|sp|P46352|XERD_BACSU RecName: Full=Tyrosine recombinase xerD
 gi|225185137|emb|CAB14283.2| site-specific tyrosine recombinase for chromosome partitioning
           [Bacillus subtilis subsp. subtilis str. 168]
 gi|320018101|gb|ADV93087.1| site-specific tyrosine recombinase XerD [Bacillus subtilis BSn5]
          Length = 296

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 45/264 (17%), Positives = 98/264 (37%), Gaps = 24/264 (9%)

Query: 85  GSLAVNSRISFESYFD----QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI---QFL 137
             L+ N+ +S+E         +       D+  +T  HI   ++  K +  S     + L
Sbjct: 16  RGLSQNTIVSYERDLKSYSLYLTETLHVTDWNHVTRIHIIQYLKHLKDSGKSGKTSARHL 75

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPR 193
            S+R   ++ +R++    +P + +E  K +    +     ++++           G + +
Sbjct: 76  ASIRSFHQFLLREKVTDKDPSVHIETQKTERALPKVLALNEVERLLDTPKLTSPFGYRDK 135

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLL---AMTP 249
              E L  +G+R S+        +  ++  I+   K      V + +     +       
Sbjct: 136 AMLELLYATGIRVSEMIELKTADVHLSMGFIRCFGKGRKERIVPIGEAAASAIEEYMTKA 195

Query: 250 IGK-------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
            GK       +  F+N+  ++++   F    K  A +AG+ K  + H +R   AT   + 
Sbjct: 196 RGKLLKNNVSDALFLNHHGKQISRQGFWKNLKKIALEAGIKKELTPHTLRHSFATHLLEN 255

Query: 301 GATAHELMATYGWKTVDQAETYTK 324
           GA    +    G   +   + YT 
Sbjct: 256 GADLRAVQEMLGHADISTTQIYTH 279


>gi|148264429|ref|YP_001231135.1| tyrosine recombinase XerD [Geobacter uraniireducens Rf4]
 gi|146397929|gb|ABQ26562.1| tyrosine recombinase XerD subunit [Geobacter uraniireducens Rf4]
          Length = 295

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 48/270 (17%), Positives = 100/270 (37%), Gaps = 24/270 (8%)

Query: 85  GSLAVNSRISFES----YFDQI--IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLT 138
             L  N+  ++      Y D +   +++   +   +      + ++     P S  + L+
Sbjct: 16  KGLTKNTLEAYSRDLSVYLDFLAERKRTNPENVTALDVVEHVTRLKDSGLAPRSRARALS 75

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-EGS---QPRL 194
           ++R+  ++ + + Y   NP   +E PK         +  +++   +    +G+   + R 
Sbjct: 76  AIRMFHRFLLVENYSVSNPTAIIETPKTVNRLPEVLSGREVESLLATAKGDGTFEVRDRA 135

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFM----------K 243
             E L  +GLR S+     ++ +  +   + T   G     V + +             +
Sbjct: 136 MLEVLYATGLRVSELVSLKLRDVNIDAGYLLTMGKGEKERLVPMGESARTAIGEYLAGIR 195

Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301
           +L       E  F++    KM+   F    K ++  AG+ K  S H +R   AT   + G
Sbjct: 196 ILLDRKGDNEYLFLSRLGGKMSRQAFWNIIKKRSGAAGIRKNISPHTLRHSFATHLLENG 255

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRL 331
           A    +    G   +   + YT    R RL
Sbjct: 256 ADLRSVQIMLGHADLSSTQIYTH-VTRERL 284


>gi|168180442|ref|ZP_02615106.1| tyrosine recombinase XerD [Clostridium botulinum NCTC 2916]
 gi|168184537|ref|ZP_02619201.1| tyrosine recombinase XerD [Clostridium botulinum Bf]
 gi|237795269|ref|YP_002862821.1| tyrosine recombinase XerD [Clostridium botulinum Ba4 str. 657]
 gi|182668654|gb|EDT80632.1| tyrosine recombinase XerD [Clostridium botulinum NCTC 2916]
 gi|182672365|gb|EDT84326.1| tyrosine recombinase XerD [Clostridium botulinum Bf]
 gi|229260695|gb|ACQ51728.1| tyrosine recombinase XerD [Clostridium botulinum Ba4 str. 657]
          Length = 291

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 43/282 (15%), Positives = 106/282 (37%), Gaps = 21/282 (7%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVESR 126
           K +I  Y K     +L+ N+  ++    ++      +          +T       ++  
Sbjct: 2   KNIIENYIKDLQKKNLSKNTLEAYRRDVEKFSEFVRNREEKILSVDTVTIMAFVQYLQRE 61

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
               SS ++ + S+R  +K+ +++  V+ +P L  E PK +    +  + E++ +  +  
Sbjct: 62  GRATSSIVRNIVSIRNFYKYLIKKNMVSEDPTLGYEIPKIERTIPKILSVEEVDKLLNSP 121

Query: 187 S---EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG--- 240
               +G + +   E +  +G++ ++     +  +      IK + +     + +P G   
Sbjct: 122 DSSKKGLRDKAMLELMYATGVKITELLNLNIYDINLKFNYIKCRGSKKRERI-IPIGSYA 180

Query: 241 ---FMKLLAMTPIGK----ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRK 291
                  L + P       +  F+N    +M    F    K  A +A ++K   ++ +R 
Sbjct: 181 IKCLKNYLEVRPAINVYNLDYLFLNLKGTQMTRQGFWKIIKFYAKEAFIDKEIDSYTLRH 240

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
             A      GA    +    G K +   + Y+  + + ++  
Sbjct: 241 SFAVHLLQNGADIKSVQELLGHKDLAATQIYSSISKKSKIAE 282


>gi|229168834|ref|ZP_04296553.1| Tyrosine recombinase xerD [Bacillus cereus AH621]
 gi|228614682|gb|EEK71788.1| Tyrosine recombinase xerD [Bacillus cereus AH621]
          Length = 296

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 45/271 (16%), Positives = 108/271 (39%), Gaps = 25/271 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESRKHTPSSAI---QFL 137
             LA N+ +S+E      ++   + +    + ++T  HI + ++  K    S+    + +
Sbjct: 16  KGLAKNTVVSYERDLKSYVKYLQNVEQTKTFHEVTRLHIVNFLQHLKENGKSSKTLARHI 75

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KSFWSEGSQPR 193
            S+R   ++ +R+  V  +P + +E P+ + +  +  + ++++      K+  + G + +
Sbjct: 76  ASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLSIDEVEALLQTPKTASAFGIRDK 135

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGK 252
              E L  +GLR S+     ++ +   +  ++   K      + L     + +       
Sbjct: 136 AMLELLYATGLRVSELIALNLEDVHLTMGFVRCIGKGNKERIIPLGSLATEAIQKYIEKG 195

Query: 253 ----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
                     +  F+N+   +++   F    K  A +A + K  + H +R   AT   + 
Sbjct: 196 RRELMGKKAVDALFLNHHGNRLSRQGFWKILKRLAKEANIAKELTPHTLRHSFATHLLEN 255

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRL 331
           GA    +    G   +   + YT    + RL
Sbjct: 256 GADLRAVQEMLGHADISTTQIYTH-VSKARL 285


>gi|254247398|ref|ZP_04940719.1| Phage integrase [Burkholderia cenocepacia PC184]
 gi|124872174|gb|EAY63890.1| Phage integrase [Burkholderia cenocepacia PC184]
          Length = 316

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 49/268 (18%), Positives = 90/268 (33%), Gaps = 22/268 (8%)

Query: 85  GSLAVNSRISFES---YFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSSAIQFLTSM 140
             LA N+  ++      F Q +  + D          +   + +R     +S+ + L+  
Sbjct: 39  RGLARNTLDAYRRDLALFSQWLAATHDAPLDSADEAMVTGYIAARSDGKATSSNRRLSVF 98

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAF 196
           R  + WAVR+   + +P L +   K+        ++  ++        G+    + R   
Sbjct: 99  RRYYGWAVREHRASADPTLRITSAKQGARFPSTLSEAQVEALLGAPDIGTPLGLRDRTML 158

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLLAM 247
           E +  SGLR S+        +  N   ++    G+   +          +          
Sbjct: 159 ELMYASGLRVSELVTLKTVEVGLNEGVVRVMGKGSKERLVPFGEVAHGWIERYLRDARPA 218

Query: 248 T--PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGAT 303
                  +  F+      M   QF    K  A +A V  + S H +R   AT   + GA 
Sbjct: 219 LLGARAADALFVTARGDGMTRQQFWNIIKRHAQQADVRAHLSPHTLRHAFATHLLNHGAD 278

Query: 304 AHELMATYGWKTVDQAETYTKGADRIRL 331
              +    G   +   + YT  A R RL
Sbjct: 279 LRVVQLLLGHSDISTTQIYTHVA-RERL 305


>gi|145588480|ref|YP_001155077.1| tyrosine recombinase XerD [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|145046886|gb|ABP33513.1| tyrosine recombinase XerD subunit [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
          Length = 305

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 50/269 (18%), Positives = 87/269 (32%), Gaps = 24/269 (8%)

Query: 86  SLAVNSRISFESYF----DQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMR 141
            LA NS  ++          + ++SG   Y              R    ++A + LT  +
Sbjct: 27  GLAKNSLSAYRRDLLLLAQWLYQQSGVDLYAVTEKDLTAYIAHRRADKATTANRRLTVFK 86

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFE 197
             ++ A+R   V  +PC+ +   K+     +  +++ +    +        G + R   E
Sbjct: 87  RFYRHALRINLVKSDPCIGLRAAKQALRFPKTLSEDQVTALLNAPDIETPLGLRDRTMLE 146

Query: 198 FLLYSGLRCSDSCRAGV--QHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF 255
            +  SGLR S+          L   +  +   K G    V       + L        T 
Sbjct: 147 LMYASGLRVSEIVSLKTVALGLNEGVVRVVNGKGGKERLVPFGGEAGQWLRRYLAEARTP 206

Query: 256 FI-----------NNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGA 302
            +            +    +    F    K  AT A +    S H +R   AT   + GA
Sbjct: 207 LLEGKTTDAVFVGRHTGTGLTRQAFWALIKRYATVANIPVALSPHTLRHAFATHLLNHGA 266

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRL 331
               +    G   +   + YT  A R RL
Sbjct: 267 DLRVVQLLLGHADISTTQIYTHVA-RERL 294


>gi|229846398|ref|ZP_04466506.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae
           7P49H1]
 gi|229810491|gb|EEP46209.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae
           7P49H1]
          Length = 297

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 46/282 (16%), Positives = 95/282 (33%), Gaps = 26/282 (9%)

Query: 73  WLISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFDYR-----KITTKHIRSGVES 125
            LI  +     W    L+ N+  S+      +       D        +  +        
Sbjct: 5   ALIDLFLNEY-WIEKGLSENTVQSYRLDLTALCDWLDKNDLSLETLDAVDLQGFLGERLE 63

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           + +  +S  + L++MR LF++  R++Y   +P   +  PK  +   +  T++ +    + 
Sbjct: 64  KGYKVTSTARMLSAMRKLFQYLYREKYRVDDPSAVLSSPKLPSRLPKYLTEQQVSDLLNT 123

Query: 186 W----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240
                    + +   E L  +GLR ++     ++++      ++   K      V + + 
Sbjct: 124 PDVDVPLELRDKAMLELLYATGLRVTELVSLTIENMSVQQGVVRVIGKGNKERIVPMGEE 183

Query: 241 FMKL-----LAMTPI-----GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAH 287
                    L   P+       +  F +   Q+M    F    K  A  A ++    S H
Sbjct: 184 AAYWVRQFMLYGRPVLLNRQSSDVVFPSQRAQQMTRQTFWHRVKHYAILADIDADALSPH 243

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            +R   AT   + GA    +    G   +   + YT  A   
Sbjct: 244 VLRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKER 285


>gi|312903284|ref|ZP_07762464.1| tyrosine recombinase XerD [Enterococcus faecalis TX0635]
 gi|310633160|gb|EFQ16443.1| tyrosine recombinase XerD [Enterococcus faecalis TX0635]
          Length = 296

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 47/274 (17%), Positives = 107/274 (39%), Gaps = 27/274 (9%)

Query: 85  GSLAVNSRISFESYFDQ---IIRKSG----DFDYRKITTKHIRSGVESRKHTPSSAIQFL 137
             L+ N+R S+E    +    +++ G    D   R + T+ ++S  E ++ + +S I+ +
Sbjct: 16  RGLSNNTRRSYERDLKKYVAFLQEQGLHSWDEVDRYMITEFLQSLHEEQQAS-ASVIRMI 74

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPR 193
           +S+R   ++  ++     NP   ++ PK+  +     + +++ +           G + R
Sbjct: 75  SSLRGFHQFLRQERLSEHNPMQHIDSPKKVQKLPSTLSVDEVTRLIETPDTSKPLGMRNR 134

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM----- 247
              E +  +GLR S+     +  L  +I  ++T  K      + L D  ++ +       
Sbjct: 135 AILEVMYATGLRVSELIEIKLGDLHLSIGLLQTIGKGDKERIIPLGDYAIQWIERYMNEA 194

Query: 248 ------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
                     +   F+N+  + ++        K    +A + K  + H +R   AT   +
Sbjct: 195 RPQLIKNHPNETHLFVNHHGEPLSRQGIWKNLKRIVREARIEKNITPHTLRHSFATHLLE 254

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
            GA    +    G   +   + YT    + R+  
Sbjct: 255 NGADLRIVQELLGHADISTTQIYTH-ITKQRMAD 287


>gi|187477407|ref|YP_785431.1| site-specific tyrosine recombinase XerD [Bordetella avium 197N]
 gi|115421993|emb|CAJ48515.1| tyrosine recombinase [Bordetella avium 197N]
          Length = 314

 Score =  141 bits (355), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 49/312 (15%), Positives = 100/312 (32%), Gaps = 29/312 (9%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR---KSG 107
           +         +  P      +   I           LA N+  ++        R   ++G
Sbjct: 1   MAAFPHSLSAMPDPLLAQADIDAFIDALWLED---GLAANTLAAYRRDLSAFARWLQQTG 57

Query: 108 DFDYRKITTK---HIRSGVE--SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162
                ++       I +      +   P++A + L ++R  + WA+R++    +PCL + 
Sbjct: 58  QAASGQLCEASGGDIEAWFAVLHQDSRPATANRRLATLRRFYAWALREKRTGTDPCLKLA 117

Query: 163 RPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218
             ++     +  ++  ++        G+    + R   E L  +GLR S+        + 
Sbjct: 118 AARQPLRVPKTLSEAQVEALLGAPDLGTPRGLRDRAMLETLYATGLRVSELVELQTLDVS 177

Query: 219 --NNIFSIKTQKTGTIITVELPDGFMKLLAM----------TPIGKETFFINNDKQKMNA 266
             + +  +   K G    V +       L                 +  F+    Q M+ 
Sbjct: 178 LSDGVVRVVQGKGGKDRLVPMGAEAAHWLQRYLNQARPVLVGARQSDALFVTGRAQAMSR 237

Query: 267 TQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             F    K  A +A V+   S H +R   AT   + GA    +    G   +   + YT 
Sbjct: 238 QAFWQLVKKYAQRADVHAPLSPHVLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTH 297

Query: 325 GADRIRLGIKNS 336
            A      +  +
Sbjct: 298 VARERLKALHAA 309


>gi|317476478|ref|ZP_07935727.1| tyrosine recombinase XerD [Bacteroides eggerthii 1_2_48FAA]
 gi|316907504|gb|EFV29209.1| tyrosine recombinase XerD [Bacteroides eggerthii 1_2_48FAA]
          Length = 316

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 52/274 (18%), Positives = 99/274 (36%), Gaps = 23/274 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQII-----RKSGDFDYRKITTKHIRSGVESRK 127
           +I +Y++      SLA N+  ++ +   +++           +      +   +G+    
Sbjct: 16  IIRKYQQYLKLEKSLAPNTFDAYMTDLQKLLHFLEGENIEVGNVTPDDLQRFAAGLHDIG 75

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
             P S  + L+ ++  F +    +Y+  +P   +E PK   +     T E++ +  S   
Sbjct: 76  IHPRSQARILSGIKSFFHFLTVADYLETDPSELLEGPKIGFKIPEVLTVEEIDRIISAVD 135

Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-VELPDGFM 242
               EG + R   E L   GLR S+ C   +  L      IK +  G+    V +    +
Sbjct: 136 MDKKEGQRNRAILETLYSCGLRVSELCNLKLSDLYFEEGFIKVEGKGSKQRLVPISPRAI 195

Query: 243 KLLAMTPIGK----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290
           K +      +          +  F+      ++        K  A K G+ K  S H  R
Sbjct: 196 KEIKYWLTDRNLGKIKKGYEDYVFLARWGNNISRIMVFHMIKELAEKTGITKNISPHTFR 255

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              AT   + GA    +    G +++   E YT 
Sbjct: 256 HSFATHLLEGGANLRAIQCMLGHESIATTEIYTH 289


>gi|291484781|dbj|BAI85856.1| site-specific tyrosine recombinase XerD [Bacillus subtilis subsp.
           natto BEST195]
          Length = 296

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 44/264 (16%), Positives = 98/264 (37%), Gaps = 24/264 (9%)

Query: 85  GSLAVNSRISFESYFD----QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI---QFL 137
             L+ N+ +S+E         +       D+  +T  HI   ++  K +  S     + L
Sbjct: 16  RGLSQNTIVSYERDLKSYSLYLTETLHVTDWNHVTRIHIIQYLKHLKDSGKSGKTSARHL 75

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPR 193
            S+R   ++ +R++    +P + +E  K +    +     ++++           G + +
Sbjct: 76  ASIRSFHQFLLREKVTDKDPSVHIETQKTERALPKVLALNEVERLLDTPKLTSPFGYRDK 135

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLL---AMTP 249
              E L  +G+R S+        +  ++  ++   K      V + +     +       
Sbjct: 136 AMLELLYATGIRVSEMIELKTTDVHLSMGFVRCFGKGRKERIVPIGEAAASAIEEYMTKA 195

Query: 250 IGK-------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
            GK       +  F+N+  ++++   F    K  A +AG+ K  + H +R   AT   + 
Sbjct: 196 RGKLLKNNVSDALFLNHHGKQISRQGFWKNLKKIALEAGIKKELTPHTLRHSFATHLLEN 255

Query: 301 GATAHELMATYGWKTVDQAETYTK 324
           GA    +    G   +   + YT 
Sbjct: 256 GADLRAVQEMLGHADISTTQIYTH 279


>gi|224537518|ref|ZP_03678057.1| hypothetical protein BACCELL_02397 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224520831|gb|EEF89936.1| hypothetical protein BACCELL_02397 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 316

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 50/274 (18%), Positives = 99/274 (36%), Gaps = 23/274 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQII-----RKSGDFDYRKITTKHIRSGVESRK 127
           +I +Y++      +L+ N+  ++ +  D+++                  +   +G+    
Sbjct: 16  IIRKYQQYLKLEKALSANTLDAYLTDLDKLLRFLKAENIDMLSVTLDDLQRFAAGLHDIG 75

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
             P S  + ++ ++  F + +  +Y   +P   +E PK   +     T E++    +   
Sbjct: 76  IHPRSQARIMSGIKSFFHFLIMADYREDDPSELLEGPKIGFKLPEVLTVEEIDTIIATVD 135

Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-VELPDGF- 241
               EG + R   E L   GLR S+ C   +  L  +   IK +  G+    V +     
Sbjct: 136 MSKKEGQRNRAILETLYSCGLRVSELCNLKLSELYFDEGFIKVEGKGSKQRLVPISPRAI 195

Query: 242 ---------MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290
                      L  +    ++  F+      ++        K  A KAG+ K  S H  R
Sbjct: 196 KEIKYWLLDRNLGKIKKGFEDYVFLARWGNSISRIMVFHLIKELAEKAGITKNISPHTFR 255

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              AT   + GA    +    G +++   E YT 
Sbjct: 256 HSFATHLLEGGANLRAIQCMLGHESIATTEIYTH 289


>gi|121604082|ref|YP_981411.1| tyrosine recombinase XerD [Polaromonas naphthalenivorans CJ2]
 gi|120593051|gb|ABM36490.1| tyrosine recombinase XerD subunit [Polaromonas naphthalenivorans
           CJ2]
          Length = 300

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 49/292 (16%), Positives = 94/292 (32%), Gaps = 28/292 (9%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQI-------IRKSGDFDYRKITTKHIRSG 122
           ++   I           L+ N+  ++               ++    D            
Sbjct: 8   SIDAFIDALWLED---GLSRNTLAAYRRDLSLYAGWLHAKEQQHRKLDDTDEDDLKAYFS 64

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
                   +SA + LT  +  F+WA+R+  +A +P L ++  K+     +  ++  +   
Sbjct: 65  FRHAATKATSANRCLTVFKRYFRWALRENLIAADPTLKLQSAKQALRVPKVMSEAQVDAL 124

Query: 183 KSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVEL 237
            +        G + R   E +  SGLR S+       H+  N  +++    G+    V  
Sbjct: 125 LAAPDDDTPLGLRDRAMLELMYASGLRVSELVGLKTFHVGLNEGALRVMGKGSAERLVPF 184

Query: 238 PDGFMKLLAMTPIGKET----------FFINNDKQKMNATQFSIWFKAKATKAGVN--KS 285
                + +                    F+      M+   F +  K  A  AG++   S
Sbjct: 185 GQVAREWIVRYIAESRPAILGGQQTDDLFVTGHGHGMSRVMFWMLVKKYALLAGIHSPLS 244

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
            H +R   AT   + GA    +    G   +     YT  A R RL   ++ 
Sbjct: 245 PHTLRHAFATHLLNHGADLRAVQMLLGHADISTTTIYTHVA-RERLKSIHAE 295


>gi|313674963|ref|YP_004052959.1| tyrosine recombinase xerd [Marivirga tractuosa DSM 4126]
 gi|312941661|gb|ADR20851.1| tyrosine recombinase XerD [Marivirga tractuosa DSM 4126]
          Length = 299

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 49/281 (17%), Positives = 95/281 (33%), Gaps = 28/281 (9%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISF-------ESYFDQIIRKSGDFDYRKITTKHIRSG 122
               ++EY+       SLA N+  ++       + + D   R             +    
Sbjct: 3   WDVFLTEYKNYLQLERSLAENTVAAYVHDVIKLKQFLDISNRNVDPLQVSSTDLHNFLEY 62

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           V     T  +  + ++ ++  +K+ V ++ +  NP   +E PK   +     + ++++Q 
Sbjct: 63  VNELGMTVHTQARVVSGIKGFYKYLVFEDIIEDNPAELLEAPKLGRKLPDVLSFDEIEQI 122

Query: 183 KSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQH--LQNNIFSIKTQKTGTIITVE 236
            S        G +     E L  SGLR ++     + +         I   K      V 
Sbjct: 123 ISSIDRSTANGQRDLTMLEVLYSSGLRVTELTSLKISNTYFDLGFLRII-GKGSKERLVP 181

Query: 237 LPDGFMKLLAM-----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284
           +     K L +            P  ++  F+N     ++        K +   AG+ K 
Sbjct: 182 MGKSAAKQLKIYLTEVRVHQKPKPEARDIVFLNRFGGAISRISVFTMIKKQCVMAGIRKN 241

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            S H  R   AT   + GA    +    G +++   E YT 
Sbjct: 242 VSPHTFRHSFATHLIEGGADLRAVQEMLGHESITTTEIYTH 282


>gi|229192302|ref|ZP_04319267.1| Tyrosine recombinase xerD [Bacillus cereus ATCC 10876]
 gi|228591252|gb|EEK49106.1| Tyrosine recombinase xerD [Bacillus cereus ATCC 10876]
          Length = 296

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 44/271 (16%), Positives = 105/271 (38%), Gaps = 25/271 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESRKHTPSSAI---QFL 137
             LA N+ +S+E      ++   + +    + ++T  HI + ++  K    S+    + +
Sbjct: 16  KGLAKNTVVSYERDLKSYVKYLQNVEQTKTFHEVTRLHIVNFLQYLKENGKSSKTLARHI 75

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPR 193
            S+R   ++ +R+  V  +P + +E P+ + +  +  + ++++            G + +
Sbjct: 76  ASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLSVDEVEALLQTPKMTSAFGIRDK 135

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGK 252
              E L  +GLR S+     ++ +   +  ++   K      + L     + +       
Sbjct: 136 AMLELLYATGLRVSELIALNLEDVHLTMGFVRCIGKGNKERIIPLGSLATEAIQKYIEKG 195

Query: 253 ----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
                     +  F+N+   +++   F    K  A +A + K  + H +R   AT   + 
Sbjct: 196 RRELIGKKVVDALFLNHHGNRLSRQGFWKILKRLAKEANIEKELTPHTLRHSFATHLLEN 255

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRL 331
           GA    +    G   +   + YT    + RL
Sbjct: 256 GADLRAVQEMLGHADISTTQIYTH-VSKTRL 285


>gi|83644610|ref|YP_433045.1| tyrosine recombinase XerD [Hahella chejuensis KCTC 2396]
 gi|83632653|gb|ABC28620.1| tyrosine recombinase XerD [Hahella chejuensis KCTC 2396]
          Length = 284

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 49/275 (17%), Positives = 104/275 (37%), Gaps = 23/275 (8%)

Query: 85  GSLAVNSRISFESYFDQIIR-KSGD----FDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
             L+ N+R+S+     ++     G      D  +       +    +    +S+ + L++
Sbjct: 6   QGLSENTRMSYRCDLLRLAEWLMGRGRTLVDASREDLFSFLAVRMQKGAKGASSARMLST 65

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195
           +R  +++ +R+  V  +P L +E PK         ++ +++Q  +         ++ ++ 
Sbjct: 66  LRKFYRYLLREGVVQEDPTLRIEHPKVGRLLPGAISEMEVEQLLAEPDASQPIEARDKVM 125

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM------- 247
            E L  SGLR S+     +  +      ++   K G      L +  ++ L         
Sbjct: 126 LEVLYASGLRVSELVSLRLYQVNLRQGVLRVVGKGGKERLTPLGEQAVEQLEAYIKGVRP 185

Query: 248 ---TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302
                      F +    +M    F    K  A+++G++K  + H +R   AT   + GA
Sbjct: 186 QLLAGREDGVLFPSMRGSEMTRQTFWHRIKLYASRSGISKNITPHTLRHAFATHLLNHGA 245

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
               +    G   +   + YT  A + RL   +SR
Sbjct: 246 DLRVVQLLLGHSDLSTTQIYTHVA-KARLQQLHSR 279


>gi|30022176|ref|NP_833807.1| site-specific tyrosine recombinase XerD [Bacillus cereus ATCC
           14579]
 gi|206971233|ref|ZP_03232184.1| integrase/recombinase XerD [Bacillus cereus AH1134]
 gi|218235095|ref|YP_002368894.1| site-specific tyrosine recombinase XerD [Bacillus cereus B4264]
 gi|218899252|ref|YP_002447663.1| integrase/recombinase XerD [Bacillus cereus G9842]
 gi|228902600|ref|ZP_04066751.1| Tyrosine recombinase xerD [Bacillus thuringiensis IBL 4222]
 gi|228909920|ref|ZP_04073741.1| Tyrosine recombinase xerD [Bacillus thuringiensis IBL 200]
 gi|228941242|ref|ZP_04103795.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228954374|ref|ZP_04116400.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
 gi|228960355|ref|ZP_04122008.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|228974174|ref|ZP_04134744.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228980765|ref|ZP_04141070.1| Tyrosine recombinase xerD [Bacillus thuringiensis Bt407]
 gi|229047783|ref|ZP_04193363.1| Tyrosine recombinase xerD [Bacillus cereus AH676]
 gi|229071595|ref|ZP_04204813.1| Tyrosine recombinase xerD [Bacillus cereus F65185]
 gi|229081347|ref|ZP_04213850.1| Tyrosine recombinase xerD [Bacillus cereus Rock4-2]
 gi|229111564|ref|ZP_04241115.1| Tyrosine recombinase xerD [Bacillus cereus Rock1-15]
 gi|229129370|ref|ZP_04258341.1| Tyrosine recombinase xerD [Bacillus cereus BDRD-Cer4]
 gi|229146665|ref|ZP_04275032.1| Tyrosine recombinase xerD [Bacillus cereus BDRD-ST24]
 gi|229152292|ref|ZP_04280485.1| Tyrosine recombinase xerD [Bacillus cereus m1550]
 gi|229180370|ref|ZP_04307713.1| Tyrosine recombinase xerD [Bacillus cereus 172560W]
 gi|296504585|ref|YP_003666285.1| site-specific tyrosine recombinase XerD [Bacillus thuringiensis
           BMB171]
 gi|29897733|gb|AAP11008.1| DNA integration/recombination/invertion protein [Bacillus cereus
           ATCC 14579]
 gi|206734005|gb|EDZ51176.1| integrase/recombinase XerD [Bacillus cereus AH1134]
 gi|218163052|gb|ACK63044.1| integrase/recombinase XerD [Bacillus cereus B4264]
 gi|218543889|gb|ACK96283.1| integrase/recombinase XerD [Bacillus cereus G9842]
 gi|228603117|gb|EEK60595.1| Tyrosine recombinase xerD [Bacillus cereus 172560W]
 gi|228631254|gb|EEK87890.1| Tyrosine recombinase xerD [Bacillus cereus m1550]
 gi|228636835|gb|EEK93298.1| Tyrosine recombinase xerD [Bacillus cereus BDRD-ST24]
 gi|228653975|gb|EEL09842.1| Tyrosine recombinase xerD [Bacillus cereus BDRD-Cer4]
 gi|228671946|gb|EEL27239.1| Tyrosine recombinase xerD [Bacillus cereus Rock1-15]
 gi|228701969|gb|EEL54452.1| Tyrosine recombinase xerD [Bacillus cereus Rock4-2]
 gi|228711531|gb|EEL63488.1| Tyrosine recombinase xerD [Bacillus cereus F65185]
 gi|228723575|gb|EEL74940.1| Tyrosine recombinase xerD [Bacillus cereus AH676]
 gi|228778934|gb|EEM27196.1| Tyrosine recombinase xerD [Bacillus thuringiensis Bt407]
 gi|228785514|gb|EEM33523.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228799379|gb|EEM46343.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|228805306|gb|EEM51899.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
 gi|228818401|gb|EEM64473.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228849755|gb|EEM94588.1| Tyrosine recombinase xerD [Bacillus thuringiensis IBL 200]
 gi|228857041|gb|EEN01550.1| Tyrosine recombinase xerD [Bacillus thuringiensis IBL 4222]
 gi|296325637|gb|ADH08565.1| site-specific tyrosine recombinase XerD [Bacillus thuringiensis
           BMB171]
 gi|326941864|gb|AEA17760.1| site-specific tyrosine recombinase XerD [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 296

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 44/271 (16%), Positives = 105/271 (38%), Gaps = 25/271 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESRKHTPSSAI---QFL 137
             LA N+ +S+E      ++   + +    + ++T  HI + ++  K    S+    + +
Sbjct: 16  KGLAKNTVVSYERDLKSYVKYLQNVEQTKTFHEVTRLHIVNFLQYLKENGKSSKTLARHI 75

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPR 193
            S+R   ++ +R+  V  +P + +E P+ + +  +  + ++++            G + +
Sbjct: 76  ASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLSVDEVEALLQTPKMTSAFGIRDK 135

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGK 252
              E L  +GLR S+     ++ +   +  ++   K      + L     + +       
Sbjct: 136 AMLELLYATGLRVSELIALNLEDVHLTMGFVRCIGKGNKERIIPLGSLATEAIQKYIEKG 195

Query: 253 ----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
                     +  F+N+   +++   F    K  A +A + K  + H +R   AT   + 
Sbjct: 196 RRELMGKKVVDALFLNHHGNRLSRQGFWKILKRLAKEANIEKELTPHTLRHSFATHLLEN 255

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRL 331
           GA    +    G   +   + YT    + RL
Sbjct: 256 GADLRAVQEMLGHADISTTQIYTH-VSKTRL 285


>gi|23099302|ref|NP_692768.1| integrase:recombinase [Oceanobacillus iheyensis HTE831]
 gi|34222800|sp|Q7ZAM3|XERD_OCEIH RecName: Full=Tyrosine recombinase xerD
 gi|22777531|dbj|BAC13803.1| integrase : recombinase [Oceanobacillus iheyensis HTE831]
          Length = 297

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 47/271 (17%), Positives = 99/271 (36%), Gaps = 25/271 (9%)

Query: 85  GSLAVNSRISFES----YFDQIIRKSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFL 137
             L+ N+  S++     Y   +        + KI+   I   +   K    + ++  + +
Sbjct: 17  RGLSDNTLSSYKRDLTNYLQYMKDHDKTATWDKISRTDIMGFLYMLKDQGKSTATISRHI 76

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WSEGSQPRL 194
           +S+R   ++ +R++  + +P L +E PK+  +     +++++ +            + + 
Sbjct: 77  SSIRSFHQFLIREQITSNDPSLHIETPKKDRKLPDILSQDEVDRLLEIKMNTKLSVRNKA 136

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGK- 252
             E L  +GLR S+     V  L   +  ++   K      V L D     L        
Sbjct: 137 MLELLYATGLRVSELISLNVSDLHLMMGFVQCFGKGSKERIVPLGDTAKHYLEKYISEAR 196

Query: 253 ----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADA 300
                     +  F+N   +++    F    K    +AG+ K+   H +R   AT   + 
Sbjct: 197 DSLIKKNNREDALFVNQHGRRLTRQGFWKILKGLTLEAGILKTITPHTLRHSFATHLLEN 256

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRL 331
           GA    +    G   +   + YT    + RL
Sbjct: 257 GADLRLVQEMLGHADISTTQVYTH-VTKARL 286


>gi|117921769|ref|YP_870961.1| tyrosine recombinase XerD [Shewanella sp. ANA-3]
 gi|117614101|gb|ABK49555.1| tyrosine recombinase XerD [Shewanella sp. ANA-3]
          Length = 300

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 50/288 (17%), Positives = 104/288 (36%), Gaps = 26/288 (9%)

Query: 74  LISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVESR 126
           LI  +     W    L+ N+  ++ +      R       R I       +   +    +
Sbjct: 10  LIDAFLDDL-WSSKGLSDNTLSAYRTDLRHFDRYQQGQGLRLIEVGQADVRAYLAYRVEQ 68

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185
           +   +S+ + L+S+R  + + ++ + +A +P   +E PK   +     ++  + +  +  
Sbjct: 69  QFARTSSARLLSSLRRFYTYLLQTKQIAGDPMALIESPKLSRQLPDSLSESQVDRLLAEP 128

Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPD-- 239
                   + +   E L  +GLR S+     ++ +      ++   K G    V + +  
Sbjct: 129 NVDDPVECRDKAMLELLYATGLRVSELVGLTMEQMSLRQGLVRIVGKGGKERLVPMGELA 188

Query: 240 --------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGV 289
                    F +   +  I  +  F +   Q M    F    K  A++AG+    S H +
Sbjct: 189 ITEVERYLSFARYELLGNIQSDVVFPSKRAQMMTRQTFWHRIKLYASRAGIETELSPHTL 248

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
           R   AT   + GA    +    G   +   + YT  A R RL   + +
Sbjct: 249 RHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVA-RARLQELHQQ 295


>gi|78484996|ref|YP_390921.1| tyrosine recombinase XerD [Thiomicrospira crunogena XCL-2]
 gi|78363282|gb|ABB41247.1| tyrosine recombinase XerD subunit [Thiomicrospira crunogena XCL-2]
          Length = 297

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 43/267 (16%), Positives = 100/267 (37%), Gaps = 22/267 (8%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRV 142
            L+ N+  +++    +     G  D  + + + +   +      +  PSS  + L++++ 
Sbjct: 21  GLSDNTLQAYQRDLKKTQLALGKTDLSQASREQLEDYLFQLHVDQVNPSSIARCLSALKR 80

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFEF 198
            + + +    +  +P   ++ P+   +     ++  ++   +        G + +   E 
Sbjct: 81  FYLFLILHNRIQQDPAAQLKAPQLIKKIPSVISEAQVEALLNAPDLTTPLGVRDKAILEL 140

Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT--------IITVELPDGFMKLLAMTPI 250
           +  SGLR S+      + L  +   ++    G          + +E  + ++K      +
Sbjct: 141 MYASGLRVSELVNLPYEQLNLSAGLVQVTGKGNKERIVPIGQMAIEAIEAYLKSARPALV 200

Query: 251 GKE----TFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATA 304
           GK+    T F++   + M         K  A +A +    S HG+R   AT   + GA  
Sbjct: 201 GKQKWVSTLFVSRIGRTMTRQTLWHRIKNLALQADIRSQLSPHGLRHAFATHLINHGADL 260

Query: 305 HELMATYGWKTVDQAETYTKGADRIRL 331
             +    G   +   + YT  A + RL
Sbjct: 261 RTVQLLLGHSDLSTTQIYTHVA-KERL 286


>gi|313206906|ref|YP_004046083.1| tyrosine recombinase xerd [Riemerella anatipestifer DSM 15868]
 gi|312446222|gb|ADQ82577.1| tyrosine recombinase XerD [Riemerella anatipestifer DSM 15868]
 gi|325335657|gb|ADZ11931.1| XerD [Riemerella anatipestifer RA-GD]
          Length = 303

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 52/276 (18%), Positives = 96/276 (34%), Gaps = 26/276 (9%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQI-------IRKSGDFDYRKITTKHIRSGVESR 126
           I ++  +  +  +L+ N+  ++     ++       +  +   D      +     +   
Sbjct: 7   IQDFANALKFEKNLSNNTIDAYTRDIKKLQYFAENKLNDTSALDISYEQIQEYLYQISKN 66

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ----QF 182
                S  ++++S++  FK+    E  A NP   +E PK         + E+++      
Sbjct: 67  YTNERSQSRWISSIKAFFKFLHEDELRADNPARLLETPKLGLYLPDTLSFEEIESLIEAI 126

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELP--- 238
               S G +     E L   GLR S+     + +L     F I   K G    V L    
Sbjct: 127 DKTTSLGKRNHTIIETLYGCGLRVSELVELKISNLNFEEEFIIVDGKGGKTRLVPLAQYT 186

Query: 239 -----DGFMKL---LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288
                D  +++   + + P   +  F+N    K+      I  K  A +A + K  S H 
Sbjct: 187 AELIKDYLLEVRSEIKINPKHSDILFLNRRGSKLTRVMVFIIIKDLALQANIKKNISPHT 246

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            R   AT     GA    +    G  ++   E YT 
Sbjct: 247 FRHSFATHLLKNGADLRYIQEMLGHSSITTTEIYTH 282


>gi|300718203|ref|YP_003743006.1| Tyrosine recombinase [Erwinia billingiae Eb661]
 gi|299064039|emb|CAX61159.1| Tyrosine recombinase [Erwinia billingiae Eb661]
          Length = 297

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 49/285 (17%), Positives = 102/285 (35%), Gaps = 27/285 (9%)

Query: 72  KWLISEYRKSAHW--GSLAVNSRISFESYFDQII-----RKSGDFDYRKITTKHIRSGVE 124
             LI ++   A W   +LA N+  S+      +       +S       +  +   +   
Sbjct: 4   SDLIEQFL-DALWIERNLAENTVASYRLDLLSLAGWLQHNESNLLRVDAVDLQGFLAERV 62

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
              +  +S+ + L++MR LF++  R++    +P   +  PK      +  ++  + +   
Sbjct: 63  EGGYKATSSARLLSAMRRLFQYLYREKLREDDPSALLASPKLPQRLPKDLSEAQIDRLLQ 122

Query: 185 F----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPD 239
                     + +   E L  +GLR ++     + ++      ++   K      V L +
Sbjct: 123 APSVEQPIELRDKAMLELLYATGLRVTELVSLTLNNVSLRQGVVRVIGKGDKERLVPLGE 182

Query: 240 GFMKLLAMTPIGKETFFIN----------NDKQKMNATQFSIWFKAKATKAGVN---KSA 286
             +  +         + +N          +  Q+M    F    K  AT AG++    S 
Sbjct: 183 EAVHWIEQYLEYGRPWLLNGQTLDVLFPSSRAQQMTRQTFWHRIKHYATLAGIDSAKLSP 242

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIR 330
           H +R   AT   + GA    +    G   +   + YT  A +R+R
Sbjct: 243 HVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLR 287


>gi|113461426|ref|YP_719495.1| site-specific tyrosine recombinase XerD [Haemophilus somnus 129PT]
 gi|170718469|ref|YP_001783684.1| site-specific tyrosine recombinase XerD [Haemophilus somnus 2336]
 gi|112823469|gb|ABI25558.1| tyrosine recombinase XerD subunit [Haemophilus somnus 129PT]
 gi|168826598|gb|ACA31969.1| tyrosine recombinase XerD [Haemophilus somnus 2336]
          Length = 297

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 48/290 (16%), Positives = 103/290 (35%), Gaps = 27/290 (9%)

Query: 73  WLISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESR-- 126
            LI  +     W    L+ N+  S+      + +           +    +++ +  R  
Sbjct: 5   ALIDLFLNEL-WLEKGLSENTVQSYRLDLTALSQWLEPQGLSLETLDVVDLQTFLGERLT 63

Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK-- 183
             +  +S  + L+++R LF++  R++Y + +P   +  PK  +   +  T++ +      
Sbjct: 64  QGYKATSTARMLSALRKLFQYLYREKYRSDDPSAVLSSPKLPSRLPKYLTEQQVTDLLNT 123

Query: 184 --SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240
             +      + +   E L  +GLR ++     +  +  N   ++   K      V + + 
Sbjct: 124 PNTEIPLELRDKAMLEMLYATGLRVTELVSLSLDSININQGVVRVIGKGKKERIVPMGEE 183

Query: 241 FMKLLAMTPIGKETFFI----------NNDKQKMNATQFSIWFKAKATKAGVN---KSAH 287
               L    +   +F +          +    +M    F    K  A  A ++    S H
Sbjct: 184 ANYWLRQFILYGRSFLLAGQSSDVVFPSRRGTQMTRQTFWHRVKYYAILAEIDTSALSPH 243

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
            +R   AT   + GA    +    G   +   + YT  A + RL I + R
Sbjct: 244 VLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVA-KERLKILHER 292


>gi|296104556|ref|YP_003614702.1| site-specific tyrosine recombinase XerD [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
 gi|295059015|gb|ADF63753.1| site-specific tyrosine recombinase XerD [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
          Length = 298

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 50/284 (17%), Positives = 100/284 (35%), Gaps = 27/284 (9%)

Query: 73  WLISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGVES 125
            LI ++   A W   +LA N+  ++      ++             +    + +      
Sbjct: 6   ALIEQFL-DALWLEKNLAQNTLSAYRRDLTMLVEWLAHRGLSLESAQSDDLQALLGERME 64

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
             +  +S+ + L++MR LF+   R++  A +P   +  PK      +  ++  +++    
Sbjct: 65  GGYKATSSARLLSAMRRLFQHLYREKIRADDPSALLASPKLPQRLPKDLSEAQVERLLQS 124

Query: 186 ----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240
                    + +   E L  +GLR S+     +  +      ++   K      V L + 
Sbjct: 125 PAVDLPLELRDKAMLELLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEE 184

Query: 241 FMKLLAMTPIGKETFFIN----------NDKQKMNATQFSIWFKAKATKAGVN---KSAH 287
            +  L         + +N             Q+M    F    K  AT AG++    S H
Sbjct: 185 AVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYATLAGIDSEKLSPH 244

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIR 330
            +R   AT   + GA    +    G   +   + YT  A +R+R
Sbjct: 245 VLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLR 288


>gi|15838026|ref|NP_298714.1| site-specific tyrosine recombinase XerD [Xylella fastidiosa 9a5c]
 gi|34223080|sp|Q9PDF4|XERD_XYLFA RecName: Full=Tyrosine recombinase xerD
 gi|9106440|gb|AAF84234.1|AE003973_2 integrase/recombinase [Xylella fastidiosa 9a5c]
          Length = 324

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 53/274 (19%), Positives = 95/274 (34%), Gaps = 30/274 (10%)

Query: 85  GSLAVNSRISFESYFDQIIR----KSGDFD-YRKITTKHIRSGVESRKHTPSSAIQFLTS 139
             L+ ++  S+    + + R    ++G              +    + ++P S  + L+ 
Sbjct: 38  HGLSQHTLNSYRRDLEGLARWNNGRAGPLATLTPPALLDYLTWRTQQHYSPLSNARLLSV 97

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195
           +R  F +AV   +   NP   +  P       +  T+  ++   +       EG + R  
Sbjct: 98  LRTFFSYAVECGWRNDNPSTLLAHPVLPHPLPKALTESQIEALLAAPSIETPEGLRNRAM 157

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLA-------- 246
            E +  +GLR S+     V  L      ++   K G    V L +     L         
Sbjct: 158 LELMYAAGLRVSELVTLPVAMLNRRQGVLRIIGKGGKERLVPLGEESQHWLQRYLEQARP 217

Query: 247 ---------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSA 294
                        G    FIN   ++++  QF  W K  A  AG+     S H +R   A
Sbjct: 218 SLAADKPIPADSDGDVPLFINTTLKRLSRQQFWRWIKHYAALAGIAPNKVSPHVLRHSFA 277

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           T   + GA    L    G +++   + YT  A +
Sbjct: 278 THLLNHGADLRALQMLLGHRSISTTQIYTFIARQ 311


>gi|238921200|ref|YP_002934715.1| tyrosine recombinase XerD, putative [Edwardsiella ictaluri 93-146]
 gi|238870769|gb|ACR70480.1| tyrosine recombinase XerD, putative [Edwardsiella ictaluri 93-146]
          Length = 299

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 51/285 (17%), Positives = 103/285 (36%), Gaps = 27/285 (9%)

Query: 72  KWLISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVE 124
           + LI ++   A W   +LA N+  S+      +       D   +T  H       +   
Sbjct: 6   QALIEQFL-DALWLEKNLAENTLASYRQDLRTLAEWLACHDLTLLTAAHGDLQDFFAQRM 64

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
              +  SS+ + L+++R  +++  R+     +P   +  PK      +  ++  +     
Sbjct: 65  DGGYKASSSARLLSALRRCYQYLYRETLRGDDPSALLASPKLPQRLPKDLSEAQVDALLQ 124

Query: 185 FWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPD 239
             S  +    + +   E L  +GLR S+      + +      ++   K      V L +
Sbjct: 125 APSIDTPLELRDKAMLELLYATGLRVSELVGLAQEDISLRQGVVRVIGKGNKERLVPLGE 184

Query: 240 G-------FMKLLAMTPIGKET---FFINNDKQKMNATQFSIWFKAKATKAGVNK---SA 286
                   +++      +  +T    F +N  ++M    F    K  A  AG++    S 
Sbjct: 185 EAIYWIEYYLEYGRPWLVNGQTVAALFPSNRARQMTRQTFWHRIKHYAVLAGIDGDRLSP 244

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIR 330
           H +R   AT   + GA    +    G   +   + YT  A +R+R
Sbjct: 245 HVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLR 289


>gi|113866617|ref|YP_725106.1| site-specific tyrosine recombinase XerD [Ralstonia eutropha H16]
 gi|113525393|emb|CAJ91738.1| Site-specific recombinase XerD [Ralstonia eutropha H16]
          Length = 312

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 52/269 (19%), Positives = 88/269 (32%), Gaps = 24/269 (8%)

Query: 86  SLAVNSRISFESYFDQII-----RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSM 140
            L+ N+  ++      +         G+                  +   SSA + L   
Sbjct: 34  GLSRNTIDAYRRDLTLLARWLQHEHRGELPGADDGALSAYFNARHTQSRASSANRRLAVF 93

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAF 196
           R  ++WA+R+  V  +PCL +   K+     +  T+  +             G + R   
Sbjct: 94  RRFYQWALREHLVEADPCLLLRPAKQPPRYPKTLTESQVDALLEAPDTDTPLGLRDRTML 153

Query: 197 EFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELP----DGFMKLLA---- 246
           E +  SGLR S+  +     +     +  +   K      V       D   + LA    
Sbjct: 154 ELMYASGLRVSELTQMKTIEIGLNEGVARVVGGKGDKERLVPFGQQAGDWLRRYLASARP 213

Query: 247 --MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302
             +     +  F+    + M    F    K  A  AGV+   S H +R   AT   + GA
Sbjct: 214 ALLAGRACDALFVTQRGEGMTRQAFWHLIKRHARDAGVHAPLSPHTLRHAFATHLLNHGA 273

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRL 331
               +    G   +   + YT  A R RL
Sbjct: 274 DLRVVQLLLGHADISTTQIYTHVA-RERL 301


>gi|238790806|ref|ZP_04634564.1| Phage integrase [Yersinia frederiksenii ATCC 33641]
 gi|238721121|gb|EEQ12803.1| Phage integrase [Yersinia frederiksenii ATCC 33641]
          Length = 336

 Score =  140 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 60/336 (17%), Positives = 116/336 (34%), Gaps = 39/336 (11%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHES--TFIPAYMSALTGSTPKREYINSP 64
           +PP     RT  G+  + F+   G  IRL     S      AY + +             
Sbjct: 13  MPP-----RTCRGRSAFEFKPKLGGTIRLCGFDASPAQVWAAYEALIN-----------D 56

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
           ++      WL+S +  SA +  LAV ++  +  Y  +++   G+     I  +HIR  ++
Sbjct: 57  KQNENVFNWLVSRFFLSADFIELAVETQKDYRKYAVKVLSVFGEVHPDAIKPEHIRKYMD 116

Query: 125 SRK-HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
            R   + + A +       +F+WA  +  V +NPC  V++ K  +   R  T ++     
Sbjct: 117 KRGVKSRTQANREKAFTSRVFRWAYERGMVKMNPCKGVKQFKETSR-TRYITNKEYDALY 175

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
                    ++A E       R +D        L ++   I+  KTG             
Sbjct: 176 QVSPP--VVQVAMELAYLCCARQADILGMKKNQLIDDGILIQQSKTGISQIKAWGPRLTA 233

Query: 244 LLAMTP-----IGKETFFI--NNDKQKMNATQFSIWFKAKATKAGVNK-------SAHGV 289
           ++ +        G  + F+       +     F+  +     +A           + H +
Sbjct: 234 VIKLASQLPLNRGMSSIFVIHQQSGARYTRDGFNSRWLKAKAEAKEKYPELEFNFTFHDL 293

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           +    +  +    + +E  A  G K   Q   Y + 
Sbjct: 294 KAKGISDLS---GSLYEKQAISGHKNAAQTARYDRK 326


>gi|134298963|ref|YP_001112459.1| tyrosine recombinase XerD [Desulfotomaculum reducens MI-1]
 gi|134051663|gb|ABO49634.1| tyrosine recombinase XerD subunit [Desulfotomaculum reducens MI-1]
          Length = 296

 Score =  140 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 46/265 (17%), Positives = 100/265 (37%), Gaps = 26/265 (9%)

Query: 85  GSLAVNSRISFE----SYFDQIIRKSGDFDYRKITTKHIRS---GVESRKHTPSSAIQFL 137
             LA N+  S+      Y D + ++ G     +    HI S    ++     P++  + L
Sbjct: 16  RGLAQNTLASYRIDLSQYLDHLKKQ-GVSSLTQADRNHILSHLYKLQKDGKAPATISRHL 74

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ----QFKSFWSEGSQPR 193
            +++  +++ V    V+ +  +S+E PK K       + E+++    Q +     G + +
Sbjct: 75  AALKHFYRFLVSDGAVSEDYTVSLESPKLKQRLPHVLSTEEVENLLCQPQLSDPAGLRDK 134

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLA------ 246
              E +  +G+R S+     +  ++ ++  IK   K      + L    ++ +       
Sbjct: 135 AMLELIYATGIRVSEMVSLNLPDVELDMGYIKCFGKGAKERIIPLGSVAIRYIREYLERS 194

Query: 247 -----MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
                      +  F+N   +++    F    K  A +  +NK  + H +R   AT   +
Sbjct: 195 RVKLTKGKTEHQALFVNVQGKRLTRQGFWKIIKKYAKEGRINKPITPHTLRHSFATHLLE 254

Query: 300 AGATAHELMATYGWKTVDQAETYTK 324
            GA    +    G   +   + YT 
Sbjct: 255 NGADLRAVQEMLGHADISTTQIYTH 279


>gi|297616683|ref|YP_003701842.1| tyrosine recombinase XerD [Syntrophothermus lipocalidus DSM 12680]
 gi|297144520|gb|ADI01277.1| tyrosine recombinase XerD [Syntrophothermus lipocalidus DSM 12680]
          Length = 296

 Score =  140 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 40/264 (15%), Positives = 96/264 (36%), Gaps = 24/264 (9%)

Query: 85  GSLAVNSRISFESYFDQII----RKSGDFDYRKITTKHIRSGVESRKHTPSSAI---QFL 137
             L+ N+  ++       +    ++ G  D  ++    +   +        +     + L
Sbjct: 16  RGLSENTLQAYRRDIGSFLVYCEKERGISDISQVKRHDVVDFLGWLLKGGRAYSSLARTL 75

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPR 193
           ++++  F++  ++ Y+  NP  ++E P+      R  +  ++++     +     G + R
Sbjct: 76  SALKSFFRFMQKERYILTNPTDNIESPQVVRRLPRVLSVSEVEKLLEQPNPVTVRGIRDR 135

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-----------TIITVELPDGFM 242
              E +  +GLR S+     ++ +      ++    G           ++  VE      
Sbjct: 136 AMLELMYATGLRVSELLALQLEDINLVAGFVRCLGKGRKERIVPVNKTSVFWVERYISRS 195

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
           +   +    + T F+N   +K++   F       A +AG+ K    H +R   AT   + 
Sbjct: 196 RNHLVKSSLERTLFVNAKGKKLSRQGFWKILNGYARQAGIEKEIHPHTLRHSFATHLLEN 255

Query: 301 GATAHELMATYGWKTVDQAETYTK 324
           GA    +    G   +   + YT 
Sbjct: 256 GADLRAVQEMLGHADISTTQIYTH 279


>gi|269140272|ref|YP_003296973.1| site-specific tyrosine recombinase [Edwardsiella tarda EIB202]
 gi|267985933|gb|ACY85762.1| site-specific tyrosine recombinase [Edwardsiella tarda EIB202]
 gi|304560099|gb|ADM42763.1| Site-specific recombinase XerD [Edwardsiella tarda FL6-60]
          Length = 299

 Score =  140 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 48/280 (17%), Positives = 101/280 (36%), Gaps = 26/280 (9%)

Query: 72  KWLISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVE 124
           + LI ++   A W   +LA N+  S+      +       D   +T  H       +   
Sbjct: 6   QALIEQFL-DALWLEKNLAENTLASYRQDLRTLAEWLAYHDLTLLTAAHGDLQDFFAQRM 64

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
              +  SS+ + L+++R  +++  R++  + +P   +  PK      +  ++  +     
Sbjct: 65  DGGYKASSSARLLSALRRCYQYLYREKLRSDDPSALLASPKLPQRLPKDLSEAQVDALLQ 124

Query: 185 FWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPD 239
             +  +    + +   E L  +GLR S+      + +      ++   K      V L +
Sbjct: 125 APAIDTPLELRDKAMLELLYATGLRVSELVGLAQEDISLRQGVVRVIGKGNKERLVPLGE 184

Query: 240 G-------FMKLLAMTPIGKET---FFINNDKQKMNATQFSIWFKAKATKAGVNK---SA 286
                   +++      +  +T    F +N  ++M    F    K  A  AG++    S 
Sbjct: 185 EAIYWIEYYLEYGRPWLVNGQTVAALFPSNRARQMTRQTFWHRIKHYAVLAGIDAERLSP 244

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           H +R   AT   + GA    +    G   +   + YT  A
Sbjct: 245 HVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA 284


>gi|149192204|ref|ZP_01870421.1| site-specific tyrosine recombinase XerD [Vibrio shilonii AK1]
 gi|148833962|gb|EDL50982.1| site-specific tyrosine recombinase XerD [Vibrio shilonii AK1]
          Length = 304

 Score =  140 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 43/280 (15%), Positives = 105/280 (37%), Gaps = 26/280 (9%)

Query: 72  KWLISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVE 124
           + L+ ++  S  W    L+ N+  S+ +   ++++   + +YR         +  ++ + 
Sbjct: 11  QGLVEQFLDSM-WMERGLSENTLSSYRNDLFKLLKWMNEHNYRLDFISLSGLQEYQTWLM 69

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
            + +  SS  + L+++R LF++  R++  + +P   +  PK      +  T++ +     
Sbjct: 70  DQNYQQSSRARMLSAIRRLFQYLHREKLRSDDPTALLVSPKLPKRLPKDLTEDQVTALLE 129

Query: 185 F----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPD 239
                     + +   E L  +GLR ++     ++++      ++   K      V + +
Sbjct: 130 APDPNDPIELRDKAMLELLYATGLRVTELVSLTMENISLRQGVVRVIGKGNKERLVPMGE 189

Query: 240 GFMKLLAMTPIGK----------ETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSA 286
             +  ++                +  F +   ++M    F    K  A  A ++    S 
Sbjct: 190 NAIDWISEFIEKGRPALLGDKTSDVVFPSKRARQMTRQTFWHRIKFYAVLADIDTELLSP 249

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           H +R   AT   + GA    +    G   +   + YT  A
Sbjct: 250 HVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVA 289


>gi|282889659|ref|ZP_06298199.1| hypothetical protein pah_c003o054 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281500486|gb|EFB42765.1| hypothetical protein pah_c003o054 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 304

 Score =  140 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 54/287 (18%), Positives = 107/287 (37%), Gaps = 31/287 (10%)

Query: 66  KKPTTLKWLISEYRKSAHW-------GSLAVNSRISFESYFDQIIR---KSGDFDYRKIT 115
            + +TLK L   +R+   +         L+ N+  ++            +     Y+ + 
Sbjct: 3   PEESTLKALF--FREIKDFLVFIRSEKGLSSNTIEAYMRDVQNFANYAWQQEVRRYQAVE 60

Query: 116 TKHIRSGVESRKHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
            +H+ + + S K      S+  + L S++V F +  R+  +  NP + +E PK       
Sbjct: 61  PEHLIAFLGSLKSADYATSTISRTLVSLKVFFGFLKREGTIEQNPSMLLESPKLWQLLPD 120

Query: 173 PWTKEDMQ----QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
               E++     Q  +  ++G + R  FE L  SGLR S+ C   +  + +    +   K
Sbjct: 121 ILDIEEVDLLMNQPDNKTAKGVRDRAIFELLYGSGLRVSEVCTLTIYSIDDQYIRVY-GK 179

Query: 229 TGTIITVELPDGFMKLLAM---------TPIGKETFFINNDKQKMNATQFSIWFKAKATK 279
                 V +    +  +               +++ F+    + M+        K  A +
Sbjct: 180 GSKERIVPIGSQALMAVDQYLSLYRWQWDSEKEQSLFVTLRGKSMDRISIWRSIKEYAQQ 239

Query: 280 AGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           AG+ K  S H +R   AT   + GA    +    G   +   + YT+
Sbjct: 240 AGITKTISPHTLRHSFATHLLNNGADLRVIQDLLGHANISSTDRYTR 286


>gi|229134899|ref|ZP_04263706.1| Tyrosine recombinase xerD [Bacillus cereus BDRD-ST196]
 gi|228648574|gb|EEL04602.1| Tyrosine recombinase xerD [Bacillus cereus BDRD-ST196]
          Length = 296

 Score =  140 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 45/271 (16%), Positives = 108/271 (39%), Gaps = 25/271 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESRKHTPSSAI---QFL 137
             LA N+ +S+E      ++   + +    + ++T  HI + ++  K    S+    + +
Sbjct: 16  KGLAKNTVVSYERDLKSYVKYLQNVEQTKTFHEVTRLHIVNFLQHLKENGKSSKTLARHI 75

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KSFWSEGSQPR 193
            S+R   ++ +R+  V  +P + +E P+ + +  +  + ++++      K+  + G + +
Sbjct: 76  ASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLSIDEVEALLQTTKTASAFGIRDK 135

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGK 252
              E L  +GLR S+     ++ +   +  ++   K      + L     + +       
Sbjct: 136 AMLELLYATGLRVSELIALNLEDVHLTMGFVRCIGKGNKERIIPLGSLATEAIQKYIEKG 195

Query: 253 ----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
                     +  F+N+   +++   F    K  A +A + K  + H +R   AT   + 
Sbjct: 196 RRELMGKKAVDALFLNHHGNRLSRQGFWKILKRLAKEANIAKELTPHTLRHSFATHLLEN 255

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRL 331
           GA    +    G   +   + YT    + RL
Sbjct: 256 GADLRAVQEMLGHADISTTQIYTH-VSKTRL 285


>gi|152971840|ref|YP_001336949.1| site-specific tyrosine recombinase XerD [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|238896434|ref|YP_002921172.1| site-specific tyrosine recombinase XerD [Klebsiella pneumoniae
           NTUH-K2044]
 gi|262042535|ref|ZP_06015692.1| tyrosine recombinase XerD [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|330010972|ref|ZP_08306937.1| tyrosine recombinase XerD [Klebsiella sp. MS 92-3]
 gi|150956689|gb|ABR78719.1| tyrosine recombinase [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|238548754|dbj|BAH65105.1| tyrosine recombinase [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
 gi|259040095|gb|EEW41209.1| tyrosine recombinase XerD [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|328534349|gb|EGF60959.1| tyrosine recombinase XerD [Klebsiella sp. MS 92-3]
          Length = 298

 Score =  140 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 46/284 (16%), Positives = 102/284 (35%), Gaps = 27/284 (9%)

Query: 73  WLISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRKH 128
            LI ++   A W   +LA N+  ++      ++            + +  +++ +  R+ 
Sbjct: 6   ALIEQFL-DALWLERNLAENTLSAYRRDLTMLVEWLHHRGLSLASVGSDDLQALLAERQS 64

Query: 129 ---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
                +S  + L+++R  F+   R++    +P   +  PK      +  ++  +++    
Sbjct: 65  GGYKATSTARLLSAVRRFFQHLYREKIRPDDPSALLASPKLPQRLPKDLSEAQVERLLQA 124

Query: 186 ----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDG 240
                    + +   E L  +GLR S+     +  +      ++    G     V L + 
Sbjct: 125 PLVEQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVLRVVGKGNKERLVPLGEE 184

Query: 241 FMKLLA----------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAH 287
            +  +           +  +  +  F +   Q+M    F    K  A  AG++    S H
Sbjct: 185 AVLWVENYLEYGRPWLLNGVASDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPH 244

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIR 330
            +R   AT   + GA    +    G   +   + YT  A +R+R
Sbjct: 245 VLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLR 288


>gi|94309464|ref|YP_582674.1| site-specific tyrosine recombinase XerD [Cupriavidus metallidurans
           CH34]
 gi|93353316|gb|ABF07405.1| tyrosine-based site-specific recombinase [Cupriavidus metallidurans
           CH34]
          Length = 302

 Score =  140 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 52/269 (19%), Positives = 92/269 (34%), Gaps = 24/269 (8%)

Query: 86  SLAVNSRISFES---YFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTSM 140
            LA N+  ++        + + +SG      +    +     +R  +   SSA + LT  
Sbjct: 24  GLARNTIDAYRRDLAMLARWLHESGTTALLGVDDTALSGYFAARHLETRASSANRRLTVF 83

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAF 196
           R  ++WA+R+  +  +PCL +   K+     +  ++  +             G + R   
Sbjct: 84  RRFYQWALREHMIEADPCLLLRPAKQPPRFPKTLSEAQVVALLEAPDIETPLGLRDRTML 143

Query: 197 EFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVE--------LPDGFMKLLA 246
           E +  SGLR S+        +     +  +   K      V         L         
Sbjct: 144 ELMYASGLRVSELTNMKTIEVGLNEGVARVVGGKGNKERLVPFGAQAGDWLHRYLSDARP 203

Query: 247 MTPIGK--ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302
               G+  +  F+    + M    F    K  A  AG++   S H +R   AT   + GA
Sbjct: 204 TLLAGRACDELFVTQRGEGMTRQTFWHLIKKHARDAGIHAPLSPHTLRHAFATHLLNHGA 263

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRL 331
               +    G   +   + YT  A R RL
Sbjct: 264 DLRVVQLLLGHADISTTQIYTHVA-RERL 291


>gi|56421448|ref|YP_148766.1| integrase/recombinase [Geobacillus kaustophilus HTA426]
 gi|56381290|dbj|BAD77198.1| integrase/recombinase [Geobacillus kaustophilus HTA426]
          Length = 337

 Score =  140 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 41/276 (14%), Positives = 97/276 (35%), Gaps = 22/276 (7%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYR--------KITTKHIRS 121
           T + L+  + +     +L  ++   + S  +  ++   + +          +   +++  
Sbjct: 40  TFEELLEIFIEDCELRNLREHTIKYYRSELNAFVKLLKEQEIELRVSEWTGETIKRNVIM 99

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
            ++ +     S    L ++R  F +   +  +  NP   ++  + +   +  +  + ++ 
Sbjct: 100 YMKEKGLKTVSINSRLRALRAFFNFLEGRNLIKSNPMKDIKLLRDRKRIVETFDNQQIKA 159

Query: 182 FKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITV 235
                      G +       LL +G+R ++        +  +  +  I+  K G    V
Sbjct: 160 LFKACDLRTFVGLRDYTIMMLLLETGVRVNELVSIKTTDIIWEQKVIRIRNTKGGFERFV 219

Query: 236 ELPD----GFMKLLA-MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAH 287
            + D       K +A    +  +  FI  D   ++  Q     K    KAG+     S H
Sbjct: 220 PIQDKMINQLKKYIAVRGSVDTDYLFITRDDTPLSKKQVQDRIKEYGKKAGIKNVRCSPH 279

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
             R   A +    GA A +L A  G  +++  + Y 
Sbjct: 280 TFRHTFAKLCVLNGANAFQLQAILGHTSLEMTKVYV 315


>gi|225077168|ref|ZP_03720367.1| hypothetical protein NEIFLAOT_02223 [Neisseria flavescens
           NRL30031/H210]
 gi|224951516|gb|EEG32725.1| hypothetical protein NEIFLAOT_02223 [Neisseria flavescens
           NRL30031/H210]
          Length = 292

 Score =  140 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 45/277 (16%), Positives = 100/277 (36%), Gaps = 19/277 (6%)

Query: 70  TLKWLISEYRKSAHWGS-LAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESR 126
           ++  LI +  +S      L+ N+  S+     ++  +   G  D+       +   V + 
Sbjct: 2   SMDDLIDKLLESLWLQDRLSHNTLQSYRRDLVKVAARLAEGGQDWLSADEFALSDAVYAE 61

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185
               +S  + L++ + ++ W       A NP   ++ PK + +     T+  +    +  
Sbjct: 62  GEKSTSQARALSACKRMYVWLEETGQRADNPTRFLKAPKSERKLPTLITEAQIDALLAAP 121

Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-VELPDGF 241
                 G + +   E +  +GLR +++ +  +  +  +  SI+T   G  +  V L    
Sbjct: 122 DVETPHGLRDKALLEVMYATGLRVTEAVKLTLSDIDLHRGSIRTIGKGDKLRLVPLGQEA 181

Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVR 290
              +                    F++  +  ++     +  K  A  AG+   S HG+R
Sbjct: 182 AYWVERYCNESRPLLLKNKICDEVFVSQKRSGISRQLAWMIVKEYAEAAGIASLSPHGLR 241

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
              AT   + G     +    G   ++  + YT  A+
Sbjct: 242 HAFATHLVNHGVDLRSVQMMLGHSDINTTQIYTHVAN 278


>gi|163941832|ref|YP_001646716.1| site-specific tyrosine recombinase XerD [Bacillus
           weihenstephanensis KBAB4]
 gi|229013300|ref|ZP_04170441.1| Tyrosine recombinase xerD [Bacillus mycoides DSM 2048]
 gi|229061763|ref|ZP_04199096.1| Tyrosine recombinase xerD [Bacillus cereus AH603]
 gi|163864029|gb|ABY45088.1| tyrosine recombinase XerD [Bacillus weihenstephanensis KBAB4]
 gi|228717509|gb|EEL69173.1| Tyrosine recombinase xerD [Bacillus cereus AH603]
 gi|228748067|gb|EEL97931.1| Tyrosine recombinase xerD [Bacillus mycoides DSM 2048]
          Length = 296

 Score =  140 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 45/271 (16%), Positives = 108/271 (39%), Gaps = 25/271 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESRKHTPSSAI---QFL 137
             LA N+ +S+E      ++   + +    + ++T  HI + ++  K    S+    + +
Sbjct: 16  KGLAKNTVVSYERDLKSYVKYLQNVEQTKTFHEVTRLHIVNFLQHLKENGKSSKTLARHI 75

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KSFWSEGSQPR 193
            S+R   ++ +R+  V  +P + +E P+ + +  +  + ++++      K+  + G + +
Sbjct: 76  ASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLSIDEVEALLQTPKTASAFGIRDK 135

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGK 252
              E L  +GLR S+     ++ +   +  ++   K      + L     + +       
Sbjct: 136 AMLELLYATGLRVSELIALNLEDVHLTMGFVRCIGKGNKERIIPLGSLATEAIQKYIEKG 195

Query: 253 ----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
                     +  F+N+   +++   F    K  A +A + K  + H +R   AT   + 
Sbjct: 196 RRELMGKKAVDALFLNHHGNRLSRQGFWKILKRLAKEANIAKELTPHTLRHSFATHLLEN 255

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRL 331
           GA    +    G   +   + YT    + RL
Sbjct: 256 GADLRAVQEMLGHADISTTQIYTH-VSKTRL 285


>gi|167994916|ref|ZP_02576006.1| site-specific recombinase, phage integrase family [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|194444962|ref|YP_002040289.1| site-specific recombinase, phage integrase family [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
 gi|194403625|gb|ACF63847.1| site-specific recombinase, phage integrase family [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
 gi|205327312|gb|EDZ14076.1| site-specific recombinase, phage integrase family [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
          Length = 339

 Score =  140 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 67/336 (19%), Positives = 118/336 (35%), Gaps = 33/336 (9%)

Query: 5   LRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64
           ++LPP V+K RTR     YY++      + L  P   T     MSAL     +     S 
Sbjct: 11  VKLPPRVSKTRTR-----YYYKPTSRETVTL-GPITLT-----MSALWKRYEEERRNYSD 59

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
                T + L   + KSA++  LA+ ++  +  +  +++   G      I  + +R  ++
Sbjct: 60  V---MTFEKLWKMFLKSAYYTELAIRTQRDYLQHQKKLLAVFGKVKADVIKPEDVRQFMD 116

Query: 125 SRK-HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
            R   + + A Q ++SM  +++W   + YV  NPC  V +   K    +  T ED     
Sbjct: 117 RRGLQSKNQANQEMSSMSRVYRWGYERGYVKGNPCAGVSKFSLKARE-QYITDEDYLAIY 175

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
                    R A E       R +D        + +    I+  KTG            +
Sbjct: 176 KHADH--VVRAAMEISYLCAARQADVLALRWMQISDKGIFIQQGKTGKKQIKVWTPRLQQ 233

Query: 244 LLAMTPIG------KETFFINNDKQKMNATQFSIWFKAKATKA------GVNKSAHGVRK 291
            L                  NND+ +     F+  +      A       ++ + H + K
Sbjct: 234 ALKTAQTECPKLSPDALVLYNNDRGQFIRKTFNNRWLKAVRAAQSELGRQLDYTFHDI-K 292

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
             A    +   ++ +     G KT  Q   Y +   
Sbjct: 293 AKAISDFE--GSSRDKQIFSGHKTESQVLIYDRKVQ 326


>gi|72117696|gb|AAZ59959.1| tyrosine recombinase XerD subunit [Ralstonia eutropha JMP134]
          Length = 327

 Score =  140 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 48/269 (17%), Positives = 92/269 (34%), Gaps = 24/269 (8%)

Query: 86  SLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTSM 140
            L+ N+  ++      + R   +S +     I    + +   +R  +   SS+ + L   
Sbjct: 49  GLSRNTMDAYRRDLSMLARWLHQSSNGGLLGIGDTELNAYFLARHPETRASSSNRRLAVF 108

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAF 196
           R  ++WA+R++ +  +PC+ +   K+     +  ++  ++            G + R   
Sbjct: 109 RRFYQWALREQMIEADPCILLRPAKQPPRVPKTLSEAQVEALLEAPDTTTPLGLRDRTML 168

Query: 197 EFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKLLAM------- 247
           E +  SGLR S+  +     +     +  +   K      V         L         
Sbjct: 169 ELMYASGLRVSELTQMKTVEIGLNEGVARVVGGKGDKERLVPFGMQASDWLRRYLGSARP 228

Query: 248 ---TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGA 302
                   +  F+    + M    F    K  A  AG+    S H +R   AT   + GA
Sbjct: 229 ALLAGRACDALFVTQRGEGMTRQAFWHLIKRHARDAGITAPLSPHTLRHAFATHLLNHGA 288

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRL 331
               +    G   +   + YT  A R RL
Sbjct: 289 DLRVVQLLLGHADISTTQIYTHVA-RERL 316


>gi|260223080|emb|CBA33286.1| Tyrosine recombinase xerD [Curvibacter putative symbiont of Hydra
           magnipapillata]
          Length = 297

 Score =  140 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 52/272 (19%), Positives = 96/272 (35%), Gaps = 28/272 (10%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--TPSSAIQFLTSMRVL 143
            L+ N+  ++                       ++    +R      ++A + LT ++  
Sbjct: 19  GLSKNTLQAYRRDLTLFAGHLAPKPLYGAQEHDLQGYFAARHAETKATTANRRLTVLKRF 78

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLAFEFL 199
           F+WA+R+ ++A +P L ++  K+     +  T+  ++   +        G + +   E L
Sbjct: 79  FRWALREGHIAQDPTLKLQAAKQALRVPKTLTEAQVEALLNAPDTNEALGIRDKAMLELL 138

Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-------------ITVELPDGFMKLLA 246
             SGLR S+     +  L  N   ++    G+              ++  L     +LLA
Sbjct: 139 YASGLRVSELVTLRMVQLGLNEGVLRVTGKGSKERLVPFGEVAGLWLSRYLAGPRAELLA 198

Query: 247 MTPIGKETFFINNDKQK----MNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADA 300
                    F+     K    M+   F    K  A +AG+    S H +R   AT   + 
Sbjct: 199 AKQSAD--VFVTVRGSKSGTAMSRIMFWGLVKRYALQAGIRVPLSPHTLRHAFATHLLNH 256

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           GA    +    G   +     YT  A R RL 
Sbjct: 257 GADLRSVQMLLGHADISTTTIYTHIA-RDRLA 287


>gi|256424447|ref|YP_003125100.1| tyrosine recombinase XerD [Chitinophaga pinensis DSM 2588]
 gi|256039355|gb|ACU62899.1| tyrosine recombinase XerD [Chitinophaga pinensis DSM 2588]
          Length = 316

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 48/279 (17%), Positives = 101/279 (36%), Gaps = 28/279 (10%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI-------RSGVESRKHTPSSAIQFL 137
            SL+ NS  ++    +++++     + +    +            + +   T +S  + +
Sbjct: 35  RSLSANSIEAYLRDVEKLVQYLQSVNIQPPPDQVSLSDLQSCVRWIATLGMTATSQARII 94

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KSFWSEGSQPR 193
           + ++  +++   ++ V  +P + +E PK K +     + E+++Q     K+   EG + R
Sbjct: 95  SGIKAFYRYLALEDVVRQDPTILLEAPKTKRQLPDVLSFEEIEQIIGQIKAGTPEGQRNR 154

Query: 194 LAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVEL-----------PDG 240
              E +   GLR S+     +   H       +   K      V +            D 
Sbjct: 155 AILETMYSCGLRVSEVTNLQISQLHFDAGFIRV-VGKGDKERLVPIGSDAVKYINIYKDE 213

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISA 298
               + +    ++  F+N     +      +  K     AG++K  S H  R   AT   
Sbjct: 214 VRVHVPVKKGQEDILFLNRRGSALTRVMIFLVIKELTAAAGIDKQVSPHTFRHSFATHLV 273

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
           + GA    +    G +++   E YT   DR  L     R
Sbjct: 274 EGGADLRAVQEMLGHESITTTEIYTH-LDREYLRDTLQR 311


>gi|163791502|ref|ZP_02185908.1| integrase/recombinase XerD, putative [Carnobacterium sp. AT7]
 gi|159873225|gb|EDP67323.1| integrase/recombinase XerD, putative [Carnobacterium sp. AT7]
          Length = 296

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 47/269 (17%), Positives = 104/269 (38%), Gaps = 24/269 (8%)

Query: 85  GSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGVESRKHTPSSA---IQFLT 138
             L+ N+  S++    Q    I ++   ++ +I    + S ++  K    SA   I+ ++
Sbjct: 16  RGLSKNTIESYKRDISQYLTFIEENKLTEWVQIDRYVVLSFLQKLKENQKSAGTIIRMIS 75

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KSFWSEGSQPRL 194
            +R   ++  +++    +P L ++ PK+  +  +  + +++ +      +  + G + R 
Sbjct: 76  CLRQFHQFLKQEQLSLTDPMLHIDTPKKAQKLPKVLSIKEVDRLIETPNTGETLGLRDRA 135

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPI--- 250
             E L  +GLR S+     +  L  ++  I+T  K      + L D  ++ +        
Sbjct: 136 MLEVLYATGLRVSELTELKLNDLHLSLGLIQTIGKGDKERILPLGDMAIEWIEKYRRYSR 195

Query: 251 --------GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
                        F+N+  +K+         K    KAG+ K  + H +R   AT   + 
Sbjct: 196 SKLEKEGHRSPYLFLNHHGRKLTRQGVWKNLKILVKKAGIEKEVTPHTLRHSFATHLLEN 255

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRI 329
           GA    +    G   +   + YT    + 
Sbjct: 256 GADLRVVQELLGHSDISTTQIYTHITKQR 284


>gi|154483615|ref|ZP_02026063.1| hypothetical protein EUBVEN_01319 [Eubacterium ventriosum ATCC
           27560]
 gi|149735525|gb|EDM51411.1| hypothetical protein EUBVEN_01319 [Eubacterium ventriosum ATCC
           27560]
          Length = 295

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 41/270 (15%), Positives = 85/270 (31%), Gaps = 24/270 (8%)

Query: 85  GSLAVNSRISFESYFDQIIR--KSGDFD-YRKITTKHIRSGVESRKHTPSSAIQF---LT 138
              + N+ IS++    +       G  +  + IT   +   ++       +       + 
Sbjct: 16  KDTSSNTEISYKRDLTKFFEYLNIGSIEEIKNITKHDLEGYIKHLSDIGRATTTISRNVA 75

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRL 194
           S++  F +   +E +  NP + ++ PK   +     T   +       S+ S    + + 
Sbjct: 76  SIKAFFAYLYDEEIMKSNPSVGLKAPKIIKKVPEILTVSQVDALLEQPSKNSPKELRDKA 135

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254
             E L  +G+R ++     +  +      +          V       K L         
Sbjct: 136 MLELLYATGMRVTELITLKMDDVNLAQEYVVCHDRKKERIVPFGSDAKKALVRYITDGRE 195

Query: 255 FFI-----------NNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAG 301
           + +           N     M+   F    K    KAG+    + H +R   A+   + G
Sbjct: 196 YLLGDNEDSVIMFPNCQGGAMSRQGFWKLIKMYGKKAGIETELTPHTLRHSFASHLVENG 255

Query: 302 ATAHELMATYGWKTVDQAETY-TKGADRIR 330
           A    +    G   +   + Y T G  R+R
Sbjct: 256 ADLKSVQEMLGHSDISTTQIYMTSGNKRVR 285


>gi|84393959|ref|ZP_00992699.1| tyrosine recombinase [Vibrio splendidus 12B01]
 gi|84375403|gb|EAP92310.1| tyrosine recombinase [Vibrio splendidus 12B01]
          Length = 304

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 100/278 (35%), Gaps = 26/278 (9%)

Query: 74  LISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVESR 126
           L+ ++   A W    L+ N+ +S+ +   +++      +YR         +  +  +   
Sbjct: 13  LVEQFL-DAMWMERGLSENTLVSYRTDLSKLLTWMEKNNYRLDFISLSGLQDYQGWLADA 71

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185
               +S  + L+++R LF++  R++    +P   +  PK      +  ++E +       
Sbjct: 72  DFKQTSRARMLSAIRRLFQYLHREKVRGDDPSALLISPKLPQRLPKDLSEEQVNALLEAP 131

Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241
                   + +   E L  +GLR ++     ++++      ++   K G    V + +  
Sbjct: 132 DPNDPIELRDKAMLELLYATGLRVTELVSLTMENISLRQGVVRVIGKGGKERLVPMGENA 191

Query: 242 MKLLAMTPIGK----------ETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288
           +  +                 +  F +   ++M    F    K  +  AG++    S H 
Sbjct: 192 VDWIETFIEQGRPQLLGENSSDVVFPSKRAKQMTRQTFWYRIKHYSVVAGIDTELLSPHV 251

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           +R   AT   + GA    +    G   +   + YT  A
Sbjct: 252 LRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVA 289


>gi|296135962|ref|YP_003643204.1| tyrosine recombinase XerD [Thiomonas intermedia K12]
 gi|295796084|gb|ADG30874.1| tyrosine recombinase XerD [Thiomonas intermedia K12]
          Length = 317

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 55/308 (17%), Positives = 108/308 (35%), Gaps = 33/308 (10%)

Query: 59  EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG---DFDYRKIT 115
           E+  +P     T+               L+ N+  ++      + R           + T
Sbjct: 9   EWPPAPEACAATIDRFCDALWLED---GLSPNTLAAYRRDLTLMARWLAFSRRPPLIEAT 65

Query: 116 TKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
            + +++ + +R  +   +S+ + L  +R  ++WA+R+   + +P L ++  ++     + 
Sbjct: 66  LRDVQAYIAARFVQSKATSSNRRLVVLRRFYRWALREHLRSDDPTLQLDTARQPPRRPKT 125

Query: 174 WTKEDMQQFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQK 228
            ++  ++   +        G + R   E L  SGLR S+     V  +  +   ++   K
Sbjct: 126 LSEAQVEALLAAPEVDTPLGLRDRAMLELLYASGLRVSELVALPVVRVSLDQGVVQIAGK 185

Query: 229 TGTIITVELP----DGFMKLLAMT------PIGKETFFINND-------KQKMNATQFSI 271
            G    V       D     L                F+             M    F +
Sbjct: 186 GGKERLVPFGSAAQDWLQNYLRTARHELLQGRDSPFLFVTARSGQSARETTGMTRQMFWM 245

Query: 272 WFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             KA A KAG++   S H +R   AT   + GA    +    G   +   + YT  A R 
Sbjct: 246 RIKAYARKAGIDVPLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHIA-RE 304

Query: 330 RLGIKNSR 337
           RL   ++R
Sbjct: 305 RLKTLHAR 312


>gi|28897283|ref|NP_796888.1| site-specific tyrosine recombinase XerD [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|260363587|ref|ZP_05776407.1| tyrosine recombinase XerD [Vibrio parahaemolyticus K5030]
 gi|260876248|ref|ZP_05888603.1| tyrosine recombinase XerD [Vibrio parahaemolyticus AN-5034]
 gi|260896426|ref|ZP_05904922.1| tyrosine recombinase XerD [Vibrio parahaemolyticus Peru-466]
 gi|260902723|ref|ZP_05911118.1| tyrosine recombinase XerD [Vibrio parahaemolyticus AQ4037]
 gi|28805492|dbj|BAC58772.1| integrase/recombinase XerD [Vibrio parahaemolyticus RIMD 2210633]
 gi|308088405|gb|EFO38100.1| tyrosine recombinase XerD [Vibrio parahaemolyticus Peru-466]
 gi|308092863|gb|EFO42558.1| tyrosine recombinase XerD [Vibrio parahaemolyticus AN-5034]
 gi|308107651|gb|EFO45191.1| tyrosine recombinase XerD [Vibrio parahaemolyticus AQ4037]
 gi|308113317|gb|EFO50857.1| tyrosine recombinase XerD [Vibrio parahaemolyticus K5030]
          Length = 305

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 46/279 (16%), Positives = 102/279 (36%), Gaps = 26/279 (9%)

Query: 73  WLISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVES 125
            L+ ++   A W    L+ N+  S+ +   +++       YR         +  ++ +  
Sbjct: 13  ALVEQFL-DAMWMERGLSENTLASYRNDLMKLLTWMDHHRYRLDFISLSGLQEYQTYLVD 71

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
             +  +S  + L+++R LF++  R++  A +P   +  PK      +  ++E +      
Sbjct: 72  LDYKQTSRARMLSAIRRLFQYLHREKVRADDPSALLVSPKLPQRLPKDISEEQVDALLDA 131

Query: 186 ----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDG 240
                    + +   E L  +GLR ++     ++++      ++ T K G    V + + 
Sbjct: 132 PDPNDPVELRDKAMLELLYATGLRVTELVSLTMENISLRQGVVRVTGKGGKERLVPMGEN 191

Query: 241 FMKLLAMTP----------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAH 287
            +  +                 +  F +   ++M    F    K  A  AG++    S H
Sbjct: 192 AVDWIETFIQQGRPALLGETSSDVVFPSKRARQMTRQTFWHRIKYYAVIAGIDTDQLSPH 251

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            +R   AT   + GA    +    G   +   + YT  A
Sbjct: 252 VLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVA 290


>gi|255534331|ref|YP_003094702.1| Integrase [Flavobacteriaceae bacterium 3519-10]
 gi|255340527|gb|ACU06640.1| Integrase [Flavobacteriaceae bacterium 3519-10]
          Length = 302

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 49/265 (18%), Positives = 93/265 (35%), Gaps = 25/265 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKS-------GDFDYRKITTKHIRSGVESRKHTPSSAIQFL 137
            + + N+  ++     ++   +       G  +      +     +  +K +  S  +++
Sbjct: 19  RNFSDNTLDAYLRDIRKLSDYAEFHLDGTGPLEISYENIQEYLFQLSKQKFSERSQARWI 78

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPR 193
           +S++  FK+    E    NP   +E PK         + ED+++           G + +
Sbjct: 79  SSIKAFFKYLAEDEAREDNPTTLLESPKLGLYLPDTLSFEDVERIIKAINISTDLGRRNQ 138

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELP--------DGFMKL 244
              E L   GLR S+     + ++      +K   K      V L         +   ++
Sbjct: 139 CMIEVLYGCGLRVSELIDLKISNINFKELYLKVDGKGDKSRFVPLATYTAKLIKEYIQEI 198

Query: 245 LAMTPIGK---ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
            +   I K   +  F+N+    M+     I  K    KAG+NK  S H  R   AT    
Sbjct: 199 RSKYKINKKCEDVLFLNSRGSAMSRVIVFIIIKELTEKAGINKKISPHTFRHSFATHLLQ 258

Query: 300 AGATAHELMATYGWKTVDQAETYTK 324
            GA    +    G  ++   E YT 
Sbjct: 259 NGADLRYIQEMLGHSSITTTEIYTH 283


>gi|260062440|ref|YP_003195520.1| putative tyrosine recombinase [Robiginitalea biformata HTCC2501]
 gi|88784003|gb|EAR15174.1| putative tyrosine recombinase [Robiginitalea biformata HTCC2501]
          Length = 300

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 48/289 (16%), Positives = 92/289 (31%), Gaps = 28/289 (9%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFD----QIIRKSGDFDYRKITTKHIRSGVES 125
            +  I++Y         L+ NS  S+          +         + I  K I + +  
Sbjct: 3   WEEAITDYLHYLRLERGLSENSVRSYRRDVRKLAGYLAENEPGITPKSIDRKDIEAFIHH 62

Query: 126 RK--HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
                   S  + ++ ++  F + + + Y   NP   +E PK   +     + E++ +  
Sbjct: 63  VGTDLKARSQARLISGLKGFFGYLIFEGYRKDNPMDLIEAPKLGRKLPDTLSVEEIDRLV 122

Query: 184 SF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH--LQNNIFSIKTQKTGTIITVEL 237
           +       EG +     E L   GLR S+     +           + T K      V +
Sbjct: 123 AEIDRSAPEGERNLAILETLYGCGLRVSELLGLRLSDLFFDEGFIKV-TGKGSKDRFVPI 181

Query: 238 PDGFMKLLAMTPIG-----------KETFFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284
                + +                 ++  F+N   + ++        +  A +AG+ K  
Sbjct: 182 GPYNRECILRYIREVRPHQQPQAGFEDVVFLNRRGRGLSRAMIFTIIRDLAARAGLRKNV 241

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           S H  R   AT     GA    +    G +++   E Y    DR  L  
Sbjct: 242 SPHTFRHSFATHLLQNGADIRAIQQMLGHESITTTEVYMH-VDRTHLAE 289


>gi|261342297|ref|ZP_05970155.1| tyrosine recombinase XerD [Enterobacter cancerogenus ATCC 35316]
 gi|288315638|gb|EFC54576.1| tyrosine recombinase XerD [Enterobacter cancerogenus ATCC 35316]
          Length = 298

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 51/284 (17%), Positives = 101/284 (35%), Gaps = 27/284 (9%)

Query: 73  WLISEYRKSAHW--GSLAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVES 125
            L+ ++   A W   +LA N+  ++      +      RK      +    + +      
Sbjct: 6   ALVEQFL-DALWLEKNLAENTLSAYRRDLTMLVEWLSRRKLSLETVQHDDLQALLGERVD 64

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
             +  +S+ + L++MR LF+   R++  A +P   +  PK      +  ++  +++    
Sbjct: 65  GGYKATSSARLLSAMRRLFQHLFREKIRADDPSALLASPKLPQRLPKDLSEAQVERLLQS 124

Query: 186 ----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240
                    + +   E L  +GLR S+     +  +      ++   K      V L + 
Sbjct: 125 PAVDLPLELRDKAMLELLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEE 184

Query: 241 FMKLLAMTPIGKETFFIN----------NDKQKMNATQFSIWFKAKATKAGVN---KSAH 287
            +  L         + +N             Q+M    F    K  AT AG++    S H
Sbjct: 185 AVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYATLAGIDSEKLSPH 244

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIR 330
            +R   AT   + GA    +    G   +   + YT  A +R+R
Sbjct: 245 VLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLR 288


>gi|86147402|ref|ZP_01065715.1| tyrosine recombinase [Vibrio sp. MED222]
 gi|85834830|gb|EAQ52975.1| tyrosine recombinase [Vibrio sp. MED222]
          Length = 304

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 101/278 (36%), Gaps = 26/278 (9%)

Query: 74  LISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVESR 126
           L+ ++   A W    L+ N+ +S+ +   +++      +YR         +  +  +   
Sbjct: 13  LVEQFL-DAMWMERGLSENTLVSYRTDLSKLLTWMEKNNYRLDFISLSGLQDYQGWLADA 71

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185
               +S  + L+++R LF++  R++  A +P   +  PK      +  ++E +       
Sbjct: 72  DFKQTSRARMLSAIRRLFQYLHREKVRADDPSALLISPKLPKRLPKDLSEEQVDSLLEAP 131

Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241
                   + +   E L  +GLR ++     ++++      ++   K G    V + +  
Sbjct: 132 DPNDPIELRDKAMLELLYATGLRVTELVSLTMENISLRQGVVRVIGKGGKERLVPMGENA 191

Query: 242 MKLLAMTPIGK----------ETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288
           +  +                 +  F +   ++M    F    K  +  AG++    S H 
Sbjct: 192 VDWIETFIEQGRPQLLGDNSSDVVFPSKRAKQMTRQTFWYRIKHYSVIAGIDTDLLSPHV 251

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           +R   AT   + GA    +    G   +   + YT  A
Sbjct: 252 LRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVA 289


>gi|153839359|ref|ZP_01992026.1| tyrosine recombinase XerD [Vibrio parahaemolyticus AQ3810]
 gi|149747107|gb|EDM58095.1| tyrosine recombinase XerD [Vibrio parahaemolyticus AQ3810]
 gi|328472047|gb|EGF42924.1| site-specific tyrosine recombinase XerD [Vibrio parahaemolyticus
           10329]
          Length = 305

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 46/279 (16%), Positives = 102/279 (36%), Gaps = 26/279 (9%)

Query: 73  WLISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVES 125
            L+ ++   A W    L+ N+  S+ +   +++       YR         +  ++ +  
Sbjct: 13  ALVEQFL-DAMWMERGLSENTLASYRNDLMKLLTWMEHHRYRLDFISLSGLQEYQTYLVD 71

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
             +  +S  + L+++R LF++  R++  A +P   +  PK      +  ++E +      
Sbjct: 72  LDYKQTSRARMLSAIRRLFQYLHREKVRADDPSALLVSPKLPQRLPKDISEEQVDALLDA 131

Query: 186 ----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDG 240
                    + +   E L  +GLR ++     ++++      ++ T K G    V + + 
Sbjct: 132 PDPNDPVELRDKAMLELLYATGLRVTELVSLTMENISLRQGVVRVTGKGGKERLVPMGEN 191

Query: 241 FMKLLAMTP----------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAH 287
            +  +                 +  F +   ++M    F    K  A  AG++    S H
Sbjct: 192 AIDWIETFIQQGRPALLGETSSDVVFPSKRARQMTRQTFWHRIKYYAVIAGIDTDQLSPH 251

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            +R   AT   + GA    +    G   +   + YT  A
Sbjct: 252 VLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVA 290


>gi|91792109|ref|YP_561760.1| tyrosine recombinase XerD [Shewanella denitrificans OS217]
 gi|91714111|gb|ABE54037.1| Tyrosine recombinase XerD [Shewanella denitrificans OS217]
          Length = 303

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 46/275 (16%), Positives = 96/275 (34%), Gaps = 23/275 (8%)

Query: 85  GSLAVNSRISFESYFDQIIR-----KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
             L+ N+  S+ +      R     +    D  + T +   +  + +    SS+ + ++S
Sbjct: 25  KGLSNNTLASYGTDLRHFQRYLAAQQLNLLDASQETVRQYLAWRQEQGFAKSSSARLMSS 84

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK----SFWSEGSQPRLA 195
           +R  + + +  + +AI+PC  +  PK         ++ ++        +      + +  
Sbjct: 85  LRRFYAYWLSLKRIAIDPCAKLASPKLSRGLPAALSEAEVDALLSEPAADDPIEIRDKAM 144

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPD----------GFMKL 244
            E L  +GLR ++     +  +      ++ T K G    V L +             + 
Sbjct: 145 LELLYATGLRVTELVSLTMDQISLRQGLVRITGKGGKERLVPLGELAVAEVDTYLSLARS 204

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGA 302
             +     E  F +     M    F    K  A +A +    S H +R   AT   + GA
Sbjct: 205 ELLKGKQSEVLFPSKRGTMMTRQTFWHRIKHYALRASIATELSPHTLRHAFATHLLNHGA 264

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
               +    G   +   + YT  A + RL   + +
Sbjct: 265 DLRVVQLLLGHSDLSTTQIYTHVA-KARLQDLHRQ 298


>gi|194288692|ref|YP_002004599.1| site-specific tyrosine recombinase xerd [Cupriavidus taiwanensis
           LMG 19424]
 gi|193222527|emb|CAQ68530.1| site-specific tyrosine recombinase [Cupriavidus taiwanensis LMG
           19424]
          Length = 312

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 51/269 (18%), Positives = 91/269 (33%), Gaps = 24/269 (8%)

Query: 86  SLAVNSRISFESYFDQII-----RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSM 140
            L+ N+  ++      +       + G+                  +   SSA + L   
Sbjct: 34  GLSRNTIDAYRRDLTLLARWLQHEQRGELLDADDGALSAYFSARHTQTRASSANRRLAVF 93

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAF 196
           R  ++WA+R+  V ++PCL +   K+     +  ++  ++            G + R   
Sbjct: 94  RRFYQWALREHLVQVDPCLLLRPAKQPPRHPKTLSEAQVEALLEAPDTETPLGLRDRTML 153

Query: 197 EFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELP----DGFMKLLA---- 246
           E +  SGLR S+  +     +     +  +   K      V       D   + LA    
Sbjct: 154 ELMYASGLRVSELTQMKTVEIGLNEGVARVVGGKGDKERLVPFGQQAGDWLRRYLASARP 213

Query: 247 --MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302
             +     +  F+    + M    F    K  A  AGV+   S H +R   AT   + GA
Sbjct: 214 VLLAGRACDALFVTQRGEGMTRQAFWHLIKRHARDAGVHAPLSPHTLRHAFATHLLNHGA 273

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRL 331
               +    G   +   + YT  A R RL
Sbjct: 274 DLRVVQLLLGHADISTTQIYTHVA-RERL 301


>gi|186475291|ref|YP_001856761.1| site-specific tyrosine recombinase XerD [Burkholderia phymatum
           STM815]
 gi|184191750|gb|ACC69715.1| tyrosine recombinase XerD [Burkholderia phymatum STM815]
          Length = 315

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 47/284 (16%), Positives = 85/284 (29%), Gaps = 25/284 (8%)

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE---- 124
            ++               LA N+  ++            +     +              
Sbjct: 25  ASIDAFCDALWLE---HGLARNTLDAYRRDLRLFSEWLAERRDASLDAASEADLTAYSAA 81

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
                 +SA + L+  R  + WAVR+   + +P L +   K+        T+  ++    
Sbjct: 82  RSADKSTSANRRLSVFRRYYAWAVREHRASADPTLRIRSAKQPPRFPSTLTEAQVEALLG 141

Query: 185 F----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPD 239
                   G + R   E +  SGLR S+        +  N   ++    G+    +   +
Sbjct: 142 APDVTTPLGLRDRTMLELMYASGLRVSELVTLKTVEVGLNEGVVRVMGKGSKERLIPFGE 201

Query: 240 GFMKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287
                +                 +  F+    + M   QF    K  A  A V+   S H
Sbjct: 202 EAHAWIERYLRESRPALLGQRSADALFVTARAEGMTRQQFWNIIKRHALTAHVHAPLSPH 261

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            +R   AT   + GA    +    G   +   + YT  A R RL
Sbjct: 262 TLRHAFATHLLNHGADLRVVQLLLGHTDISTTQIYTHVA-RERL 304


>gi|121593407|ref|YP_985303.1| tyrosine recombinase XerD [Acidovorax sp. JS42]
 gi|222110117|ref|YP_002552381.1| tyrosine recombinase xerd [Acidovorax ebreus TPSY]
 gi|120605487|gb|ABM41227.1| tyrosine recombinase XerD [Acidovorax sp. JS42]
 gi|221729561|gb|ACM32381.1| tyrosine recombinase XerD [Acidovorax ebreus TPSY]
          Length = 303

 Score =  140 bits (352), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 48/274 (17%), Positives = 93/274 (33%), Gaps = 23/274 (8%)

Query: 86  SLAVNSRISFESYF----DQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTS 139
            L+ N+  ++          + +++           H++    +R  +   +SA + LT 
Sbjct: 25  GLSRNTLAAYRRDLTLYAQWLAQQNPPLALDATAEHHLQGYFAARHAQTRATSANRRLTV 84

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195
           +R  F WA+R+  +A +P + ++  ++     +  T+  ++            G + R  
Sbjct: 85  LRRYFHWALRERRIAADPTVRLQAARQPLRVPKTLTQAQVEALLHAPDDATPLGLRDRTM 144

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGK-- 252
            E +  SGLR S+       HL      ++   K G    V   +   + L         
Sbjct: 145 LELMYASGLRVSELVTLKTFHLGLAEGVLRVMGKGGKERLVPFGEEAHRWLQRYLAEGRG 204

Query: 253 --------ETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGA 302
                   +  F+      M+   F +  K  A  AG+    S H +R   AT   + GA
Sbjct: 205 AILGGQQTDDLFVTQRGAAMSRVMFWVIVKKCAQAAGITAPLSPHTLRHAFATHLLNHGA 264

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
               +    G   +     YT  A      +   
Sbjct: 265 DLRVVQLLLGHADISTTTIYTHVARERLKALHAQ 298


>gi|311068948|ref|YP_003973871.1| site-specific tyrosine recombinase XerD [Bacillus atrophaeus 1942]
 gi|310869465|gb|ADP32940.1| site-specific tyrosine recombinase XerD [Bacillus atrophaeus 1942]
          Length = 296

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 43/264 (16%), Positives = 99/264 (37%), Gaps = 24/264 (9%)

Query: 85  GSLAVNSRISFESYFDQ----IIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI---QFL 137
             L+ N+ +S+E         +        + ++T  HI   ++  K +  S     + L
Sbjct: 16  RGLSQNTMMSYERDLKSYSLFLTETLQVTSWNEVTRIHIIQYLKHLKDSGKSGKTSARHL 75

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPR 193
            S+R   ++ +R++    +P + +E  K +    +  + ++++            G + +
Sbjct: 76  ASIRSFHQFLLREKVTDKDPSVHIETQKTERTLPKVLSLKEVELLLDTPKLTSPFGYRDK 135

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLA---MTP 249
              E L  +G+R S+        +  ++  ++   K      V + +     +       
Sbjct: 136 AMLELLYATGIRVSEMIDLKTSDVHLSMGFVRCFGKGRKERIVPIGETAAHAIEEYLAKA 195

Query: 250 IGK-------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
            GK       +  F+N+  ++++   F    K  A +AG+ K  + H +R   AT   + 
Sbjct: 196 RGKLLKKNVSDALFLNHHGKQISRQGFWKNLKKIALEAGIKKELTPHTLRHSFATHLLEN 255

Query: 301 GATAHELMATYGWKTVDQAETYTK 324
           GA    +    G   +   + YT 
Sbjct: 256 GADLRAVQEMLGHADISTTQIYTH 279


>gi|241758661|ref|ZP_04756775.1| tyrosine recombinase XerD [Neisseria flavescens SK114]
 gi|241321172|gb|EER57368.1| tyrosine recombinase XerD [Neisseria flavescens SK114]
          Length = 293

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 44/277 (15%), Positives = 100/277 (36%), Gaps = 19/277 (6%)

Query: 70  TLKWLISEYRKSAHWGS-LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR--SGVESR 126
           ++  LI +  +S      L+ N+  S+     ++  +  +     ++         V + 
Sbjct: 3   SMDDLIDKLLESLWLQDRLSHNTLQSYRRDLVKVAARLAECGQDWLSADEFALSDSVYAE 62

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185
               +S  + L++ + ++ W       A NP   ++ PK + +     T+  +    +  
Sbjct: 63  GEKSTSQARALSACKRMYGWLEETGQRADNPTRFLKAPKSERKLPTLITEAQIDALLAAP 122

Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-VELPDGF 241
               S G + +   E +  +GLR +++ +  +  +  +  SI+T   G  +  V L    
Sbjct: 123 DVETSHGLRDKALLEVMYATGLRVTEAVKLTLSDIDLHRGSIRTIGKGDKLRLVPLGQEA 182

Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVR 290
              +                    F++  +  ++     +  K  A  AG+   S HG+R
Sbjct: 183 AYWVERYCNESRPLLLKNKICDEVFVSQKRSGISRQLAWMIVKEYAEAAGIASLSPHGLR 242

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
              AT   + G     +    G   ++  + YT  A+
Sbjct: 243 HAFATHLVNHGVDLRSVQMMLGHSDINTTQIYTHVAN 279


>gi|331082291|ref|ZP_08331417.1| hypothetical protein HMPREF0992_00341 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330400777|gb|EGG80378.1| hypothetical protein HMPREF0992_00341 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 294

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 43/257 (16%), Positives = 101/257 (39%), Gaps = 22/257 (8%)

Query: 88  AVNSRISFESYF---DQIIRKSGDFDYRKITTK---HIRSGVESRKHTPSSAIQFLTSMR 141
           + N+ +S+E      +Q +++ G  ++ +++          +E +    SS  + + S+R
Sbjct: 19  SRNTEVSYERDLKKLEQFLKQEGILEWHQVSAVLLNSYIMYLERKNFAASSISRSVASIR 78

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ----QFKSFWSEGSQPRLAFE 197
             F++  ++E    NP   ++ PK + +     T +++     Q K   ++G + R   E
Sbjct: 79  AFFQYLCQRECWRENPAEGLKAPKIEKKAPGILTVDEVDLLLSQPKENTAKGVRDRAMLE 138

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP-------DGFMKLLAMTPI 250
            L  +G+R S+     ++ +   +  +   ++     +          + +M       +
Sbjct: 139 LLYATGIRVSELIHLTLRDVNLKLGYLTCSQSERERVIPFGATAKTAVEAYMAWARAELL 198

Query: 251 GKET---FFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAH 305
           G+ +    F+N   + M+   F    K  A  AG+  + + H +R   A      GA   
Sbjct: 199 GENSSEWLFVNCSGKSMSRQGFWKILKGYAVSAGIQQDITPHTLRHSFAAHLVQNGADLK 258

Query: 306 ELMATYGWKTVDQAETY 322
            +    G   +   + Y
Sbjct: 259 SVQEMMGHSDISTTQIY 275


>gi|146329514|ref|YP_001210015.1| tyrosine recombinase XerD [Dichelobacter nodosus VCS1703A]
 gi|146232984|gb|ABQ13962.1| tyrosine recombinase XerD [Dichelobacter nodosus VCS1703A]
          Length = 297

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 40/265 (15%), Positives = 90/265 (33%), Gaps = 21/265 (7%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI---RSGVESRKHTPSSAIQFLTSMRV 142
            L+  +  ++     Q+ +   D   +  T + +    +    R ++ +S  +  +S+  
Sbjct: 21  GLSDATLSAYRGDLQQVQKILADVPLKSATIEQMMQVLAQFHDRGYSHTSMARMRSSLNR 80

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLAFEF 198
            F + + Q+    NP   + R K +    +  ++ D++   S        G + R   E 
Sbjct: 81  FFSYQIEQKERTENPMHFLGRTKIRRHLPQTMSESDVEALLSAPDVQTILGLRDRAMLEL 140

Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVEL----PDGFMKLLAMTPIG-- 251
           L   GLR S+     +  +  ++  ++   K      V       +   + +        
Sbjct: 141 LYACGLRVSELVGLTLHQIALDVGYVQILGKGDKERLVPFGEIAHEWLQRYIQEARPQLL 200

Query: 252 ----KETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATA 304
                +  F++     ++   F    K      G++    S H +R   A+     GA  
Sbjct: 201 GQKMSDYVFVSQRGAALSRQAFWYRLKVYVCAVGLDSNKISPHTLRHAFASHLLAHGADL 260

Query: 305 HELMATYGWKTVDQAETYTKGADRI 329
             +    G   +   + YT  AD+ 
Sbjct: 261 RSIQMLLGHSDLSTTQIYTHIADQR 285


>gi|261820181|ref|YP_003258287.1| site-specific tyrosine recombinase XerD [Pectobacterium wasabiae
           WPP163]
 gi|261604194|gb|ACX86680.1| tyrosine recombinase XerD [Pectobacterium wasabiae WPP163]
          Length = 299

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 45/280 (16%), Positives = 96/280 (34%), Gaps = 26/280 (9%)

Query: 72  KWLISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFD-----YRKITTKHIRSGVE 124
           + LI ++   A W   +LA N+  S+      +       D      + +  +   +   
Sbjct: 6   QALIEQFL-DALWLERNLAENTLASYRLDLRTLAEWLAHRDNDFLQVQALDLQAFLADRV 64

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
              +  +S+ + L++MR  F++  R++  + +P   +  PK      +  ++  +     
Sbjct: 65  DGGYKATSSARLLSAMRRFFQYLYREKLRSDDPSAVLSSPKLPLRLPKDLSEAQVGALLD 124

Query: 185 F----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPD 239
                     + +   E L  +GLR S+     +  +      ++   K      V L +
Sbjct: 125 APSIEQPLELRDKAMLEVLYATGLRVSELVGLTMSDVSLRQGVVRVLGKGNKERLVPLGE 184

Query: 240 GFMKLLAMTPIGKETFFIN----------NDKQKMNATQFSIWFKAKATKAGVN---KSA 286
             +  +         + +N          N  ++M    F    K  A +A ++    S 
Sbjct: 185 EAVYWIEYYLEHGRPWLLNGQTLDVLFPSNRARQMTRQTFWHRIKHYAVQASIDSEKLSP 244

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           H +R   AT   + GA    +    G   +   + YT  A
Sbjct: 245 HVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA 284


>gi|114331486|ref|YP_747708.1| phage integrase family protein [Nitrosomonas eutropha C91]
 gi|114308500|gb|ABI59743.1| phage integrase family protein [Nitrosomonas eutropha C91]
          Length = 341

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 63/344 (18%), Positives = 116/344 (33%), Gaps = 34/344 (9%)

Query: 7   LPPFVTKE-------RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKRE 59
            PP++ K        R R  KI YY+  G   R  +    +      Y  A+        
Sbjct: 3   RPPYIHKNLPARMRARQRGKKIYYYYDTGGKPRKEISLGTD------YAIAVKKWAELEI 56

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTK 117
                  +  T +++   Y +       A  ++    S  + + R   D      +I   
Sbjct: 57  DAKPKHNQIITFRYVAERYMREIMATK-APRTQKDNLSEIEWLYRFFDDPPAPLEEIEPI 115

Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA-INPCLSVERPKRKTEGIRPWTK 176
           HIR  ++ R+   + A +       ++  A    Y +  NPC  ++  + K         
Sbjct: 116 HIRQYLDQRQAK-TRANREKALFSHIWNKAREWGYTSLPNPCAGIKGNREKGRKDVYIED 174

Query: 177 EDMQQFKSFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
              + + + +   S P R A +    +G R +D        L +   ++K QKTG  + +
Sbjct: 175 ---EIYMAVYKVASHPLRDAMDMAYLTGQRPADILALRESDLTDGRINVKQQKTGKKLRI 231

Query: 236 ELPDGFMKLLAMTPIGK-------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK---S 285
           +L      L+      K           ++   QK++ T     F      AG+ K    
Sbjct: 232 KLEGELAALIDRIKSRKVKHTIRSLYLIVDETGQKLSYTTLRSHFDKARELAGIKKEEFQ 291

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              +R  + T  A++     +     G   +   ETY +  DR 
Sbjct: 292 FRDLRAKAGTDKAESSGDIRQAQKQLGHANITMTETYIR--DRK 333


>gi|256847147|ref|ZP_05552593.1| tyrosine recombinase XerD [Lactobacillus coleohominis 101-4-CHN]
 gi|256715811|gb|EEU30786.1| tyrosine recombinase XerD [Lactobacillus coleohominis 101-4-CHN]
          Length = 296

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 39/273 (14%), Positives = 98/273 (35%), Gaps = 24/273 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH------TPSSAIQFLT 138
             L+ N+  S+++   +        +          + +    H      + ++  + ++
Sbjct: 16  RGLSNNTIQSYQNDLKKAAEYFTSQNLSSWGDIDRYAVLNLLAHLTNLGQSRTTIGRQVS 75

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRL 194
           S+R  +++ +RQ  V  +P   V  PK +       T++++++  +        G + R 
Sbjct: 76  SLRQFYQYLLRQHRVMNDPMALVTIPKGQRHLPTVLTQDEVRRMLAVPDTGKKMGIRDRA 135

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFMKLLA------- 246
             E +  +G+R S+     +  L  ++  ++ +  G     + + +     L        
Sbjct: 136 ILEVMYATGMRVSELTNLRLNDLHLDVHLVQPRGKGDKERIIPIGEVAESWLNRYLHSVR 195

Query: 247 ----MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
                     +  F+N   +++         K  A  A ++K  + H +R   AT   + 
Sbjct: 196 APQLANKPASDFVFLNARAKQLTRQAIWQLIKKTAQAAKIDKDVTPHTMRHSFATHLLEN 255

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           GA    +    G   +   + YT  + +  L +
Sbjct: 256 GADLRVVQELLGHSDITTTQIYTHVSQKRLLTV 288


>gi|315023982|gb|EFT36984.1| tyrosine recombinase XerD [Riemerella anatipestifer RA-YM]
          Length = 303

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 52/276 (18%), Positives = 95/276 (34%), Gaps = 26/276 (9%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQI-------IRKSGDFDYRKITTKHIRSGVESR 126
           I ++  +  +  +L+ N+  ++     ++       +  +   D      +     +   
Sbjct: 7   IQDFANALKFEKNLSNNTIDAYTRDIKKLQYFAENKLNDTSALDISYEQIQEYLYQISKN 66

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ----QF 182
                S  ++++S++  FK+    E  A NP   +E PK           E+++      
Sbjct: 67  YTNERSQSRWISSIKAFFKFLHEDELRADNPARLLETPKLGLYLPDTLNFEEIESLIEAI 126

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELP--- 238
               S G +     E L   GLR S+     + +L     F I   K G    V L    
Sbjct: 127 DKTTSLGKRNHTIIETLYGCGLRVSELVELKISNLNFEEEFIIVDGKGGKTRLVPLAQYT 186

Query: 239 -----DGFMKL---LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288
                D  +++   + + P   +  F+N    K+      I  K  A +A + K  S H 
Sbjct: 187 AELIKDYLLEVRSEIKINPKHSDILFLNRRGSKLTRVMVFIIIKDLALQANIKKNISPHT 246

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            R   AT     GA    +    G  ++   E YT 
Sbjct: 247 FRHSFATHLLKNGADLRYIQEMLGHSSITTTEIYTH 282


>gi|296332285|ref|ZP_06874747.1| site-specific tyrosine recombinase XerD [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305674986|ref|YP_003866658.1| site-specific tyrosine recombinase for chromosome partitioning
           [Bacillus subtilis subsp. spizizenii str. W23]
 gi|296150599|gb|EFG91486.1| site-specific tyrosine recombinase XerD [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305413230|gb|ADM38349.1| site-specific tyrosine recombinase for chromosome partitioning
           [Bacillus subtilis subsp. spizizenii str. W23]
          Length = 296

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 41/264 (15%), Positives = 96/264 (36%), Gaps = 24/264 (9%)

Query: 85  GSLAVNSRISFESYFD----QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI---QFL 137
             L+ N+ +S+E         +       D+  +T  HI   ++  K +  S     + L
Sbjct: 16  RGLSQNTVVSYERDLKSYSLYLTETLHVTDWNHVTRIHIIQYLKHLKDSGKSGKTSARHL 75

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPR 193
            S+R   ++ +R++    +P + +E  K +    +     ++++           G + +
Sbjct: 76  ASIRSFHQFLLREKVTDKDPSVHIETQKTERALPKVLALNEVERLLDTPKLTSPFGYRDK 135

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGK 252
              E L  +G+R S+        +  ++  ++   K      V + +     +       
Sbjct: 136 AMLELLYATGIRVSEMIELKTADVHLSMGFVRCFGKGRKERIVPIGEAAASAIEEYITKA 195

Query: 253 ----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
                     +  F+N+  ++++   F    K  A +AG+ K  + H +R   A+   + 
Sbjct: 196 RGKLLKNNVSDALFLNHHGKQISRQGFWKNLKKIALEAGIKKELTPHTLRHSFASHLLEN 255

Query: 301 GATAHELMATYGWKTVDQAETYTK 324
           GA    +    G   +   + YT 
Sbjct: 256 GADLRAVQEMLGHADISTTQIYTH 279


>gi|284008429|emb|CBA74880.1| tyrosine recombinase [Arsenophonus nasoniae]
          Length = 303

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 48/283 (16%), Positives = 95/283 (33%), Gaps = 27/283 (9%)

Query: 74  LISEYRKSAHW--GSLAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVESR 126
           LI ++  +  W    LA N+  S+ +    +      +         +  +   +     
Sbjct: 12  LIEQFLDTI-WLEHDLAANTLSSYRTDLQTLVGWLSRQGYDLLTVGVMDLQSFLAERVEG 70

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185
            +  +S+ + L++MR LF++  R++    +P   +  PK      +   ++ ++      
Sbjct: 71  GYKATSSARLLSAMRRLFQYFYREKLRTDDPTAQLSAPKLPKRLPKDLNEKQVEDLLHAP 130

Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGF 241
                   + +   E L   GLR S+     +  +      I+    G     V L +  
Sbjct: 131 TTQDPIELRDKTMLEVLYACGLRVSELVGLTLTDISLRQGVIRVVGKGNKERLVPLGEEA 190

Query: 242 MKLLAMTPIGKETFFIN----------NDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288
           +  L           +N              +M    F    K  A  AG++    S H 
Sbjct: 191 IYWLETYLTESRPILLNGLTNDVLFPSKRGTQMTRQTFWHRIKYYAAIAGIDSAKLSPHV 250

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIR 330
           +R   AT   + GA    +    G   +   + YT  A +R+R
Sbjct: 251 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLR 293


>gi|329296874|ref|ZP_08254210.1| tyrosine recombinase XerD [Plautia stali symbiont]
          Length = 297

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 51/285 (17%), Positives = 106/285 (37%), Gaps = 27/285 (9%)

Query: 72  KWLISEYRKSAHW--GSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVESR- 126
             LI ++   A W   +LA N+  S+      +       +     +    ++  +  R 
Sbjct: 4   SDLIEQFL-DALWTERNLAQNTLASYRQDLQTLTAWLHHHERTLLSLEAADLQQFLAERI 62

Query: 127 --KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
              +  +S+ + L++MR LF++  R++  + +P   +  PK      +  ++  +++   
Sbjct: 63  EGGYKATSSARTLSAMRRLFQYLYREKLRSDDPSALLSAPKLPQRLPKDLSENQVERLLQ 122

Query: 185 F----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT------ 234
                     + +   E L  +GLR S+     +  +      ++    G          
Sbjct: 123 APATDIPLELRDKAMLELLYATGLRVSELVGLTLSDVSLRQGVVRVIGKGNKERLVPLGE 182

Query: 235 --VELPDGFMKLLAMTPIGKETF---FINNDKQKMNATQFSIWFKAKATKAGVN---KSA 286
             +   + +M+      +  +T    F +N  Q+M    F    K  AT AG++    S 
Sbjct: 183 EAIYWLEHYMEHGRPWLLNGQTIDVLFPSNRAQQMTRQTFWHRIKHYATLAGIDSEKLSP 242

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIR 330
           H +R   AT   + GA    +    G   +   + YT  A +R+R
Sbjct: 243 HVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLR 287


>gi|288926604|ref|ZP_06420520.1| integrase/recombinase XerD [Prevotella buccae D17]
 gi|288336626|gb|EFC74996.1| integrase/recombinase XerD [Prevotella buccae D17]
          Length = 304

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 45/278 (16%), Positives = 98/278 (35%), Gaps = 24/278 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTK-----HIRSGVESRKHTPSSAIQFLTS 139
            + + N+  ++      ++    +     +  +        + +  +  +  S  + L+ 
Sbjct: 23  RNYSENTVEAYRHDLGYLMAFLKERGLAAVDAELSDMEEFAATLHEKNVSARSQSRILSG 82

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLA 195
           +R  +++     Y+  +P   +  P+         + E++   +        EG + +  
Sbjct: 83  VRSFYRFLRLDGYMETDPTELLGSPQTGEHLPEYLSTEEVDLLEGSIDLSKWEGQRNKAI 142

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMK----------L 244
            E L   GLR S+        L      ++   K      V +    ++          L
Sbjct: 143 IEVLFSCGLRVSELVNLKFSDLFPEEKFVRVIGKGNKERLVPISSSALRQLELWYMDRNL 202

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302
           + + P  ++  F+N     +  T   I  K +A  AG+ K  S H +R   AT     GA
Sbjct: 203 MTIKPGEEDYVFLNRRGHHLTRTMILIMIKRQAVAAGIKKTISPHTLRHSFATALLKGGA 262

Query: 303 TAHELMATYGWKTVDQAETYTK--GADRIRLGIKNSRR 338
               + A  G +++   E YT    +D  R  +++  R
Sbjct: 263 DLRAIQAMLGHESIGTTEVYTHLETSDLRREILEHHPR 300


>gi|315607090|ref|ZP_07882094.1| integrase/recombinase XerD [Prevotella buccae ATCC 33574]
 gi|315251144|gb|EFU31129.1| integrase/recombinase XerD [Prevotella buccae ATCC 33574]
          Length = 313

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 45/278 (16%), Positives = 98/278 (35%), Gaps = 24/278 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTK-----HIRSGVESRKHTPSSAIQFLTS 139
            + + N+  ++      ++    +     +  +        + +  +  +  S  + L+ 
Sbjct: 32  RNYSENTVEAYRHDLGYLMAFLKERGLAAVDAELSDMEEFAATLHEKNVSARSQSRILSG 91

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLA 195
           +R  +++     Y+  +P   +  P+         + E++   +        EG + +  
Sbjct: 92  VRSFYRFLRLDGYMETDPTELLGSPQTGEHLPEYLSTEEVDLLEGSIDLSKWEGQRNKAI 151

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMK----------L 244
            E L   GLR S+        L      ++   K      V +    ++          L
Sbjct: 152 IEVLFSCGLRVSELVNLKFSDLFPEEKFVRVIGKGNKERLVPISSSALRQLELWYMDRNL 211

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302
           + + P  ++  F+N     +  T   I  K +A  AG+ K  S H +R   AT     GA
Sbjct: 212 MTIKPGEEDYVFLNRRGHHLTRTMILIMIKRQAVAAGIKKTISPHTLRHSFATALLKGGA 271

Query: 303 TAHELMATYGWKTVDQAETYTK--GADRIRLGIKNSRR 338
               + A  G +++   E YT    +D  R  +++  R
Sbjct: 272 DLRAIQAMLGHESIGTTEVYTHLETSDLRREILEHHPR 309


>gi|170725258|ref|YP_001759284.1| tyrosine recombinase XerD [Shewanella woodyi ATCC 51908]
 gi|169810605|gb|ACA85189.1| tyrosine recombinase XerD [Shewanella woodyi ATCC 51908]
          Length = 308

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 46/275 (16%), Positives = 100/275 (36%), Gaps = 23/275 (8%)

Query: 85  GSLAVNSRISFES---YFDQIIRKSG--DFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
             L+ N+  ++ +   +F+  + KSG    D  + T +        +    +S+ + ++S
Sbjct: 30  RGLSSNTLSAYRTDLCHFEHYLIKSGIALCDATQGTIRDYLDVRFEKGFARTSSARLISS 89

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195
           +R  + + V Q  + ++P   ++ P+   +     ++ D+    S          + +  
Sbjct: 90  LRRFYGFLVIQNRIEVDPTAQIKSPQLARKLPDSLSEADVDSLLSEPNLDDPIECRDKAM 149

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSI---------KTQKTGTIITVELPDGFMKLLA 246
            E L  +GLR ++     ++ +      +         +    G +   E+    +    
Sbjct: 150 LELLYATGLRVTELVSLTMEQISLRQGVVRVVGKGGKERLVPLGEMAISEVESYLVAARG 209

Query: 247 MTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGA 302
                K +   F +     M    F    K  A +AG+  + S H +R   AT   + GA
Sbjct: 210 ELLKQKMSDVLFPSKRGSMMTRQTFWHRIKHYALRAGISTDLSPHTLRHAFATHLLNHGA 269

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
               +    G   +   + YT  A + RL   +S 
Sbjct: 270 DLRVVQLLLGHSDLSTTQIYTHVA-KARLSQLHSE 303


>gi|290475797|ref|YP_003468688.1| putative integrase [Xenorhabdus bovienii SS-2004]
 gi|289175121|emb|CBJ81924.1| putative integrase [Xenorhabdus bovienii SS-2004]
          Length = 326

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 67/336 (19%), Positives = 114/336 (33%), Gaps = 39/336 (11%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPY--PHESTFIPAYMSALTGSTPKREYINSP 64
           +PP V +     G+  Y F+   GR IRL      +S     Y   +             
Sbjct: 1   MPPRVFR-----GRSAYEFKHPDGRTIRLCALIVDKSVVWNHYEQLVNEE---------- 45

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
            K   T   L+ ++  SA +  LA +++  +  Y  +++   G  +   I   HIR  ++
Sbjct: 46  -KATFTYGSLVDDFLHSADFIELAKDTQSDYRKYSKKVVPVFGKMNPNNIRPDHIRKYMD 104

Query: 125 SRK-HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
            R   + + A +  + M  +F+W   +  V  NPC  V++ +  +   R  T  + Q   
Sbjct: 105 KRGLQSRTQANREKSFMSRVFRWGYERGLVKKNPCQGVKQYRENSRE-RYITDAEYQALY 163

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
                 +  ++A E       R  D        L      IK  KTG        +   K
Sbjct: 164 EVSP--TVIQVAMEIAYLCCARQKDILALSKSQLMEAGIYIKQHKTGKSQIKGWSERLRK 221

Query: 244 LLAMT-------PIGKETFFINNDKQKMNATQF-SIWFKAKATKAG------VNKSAHGV 289
            + +         +         + +  +   F S W KAK   A        N + H +
Sbjct: 222 AIKLANSLPLKEGLHSLYVIHQANGKIYSRDGFNSRWLKAKEIAAQKYPELRFNFTFHDL 281

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
            K       +   T  E  A  G K + Q   Y + 
Sbjct: 282 -KAKGISDLE--GTLQEKQAISGHKDIGQTARYDRK 314


>gi|156740074|ref|YP_001430203.1| integrase family protein [Roseiflexus castenholzii DSM 13941]
 gi|254799355|sp|A7NFG3|XERC_ROSCS RecName: Full=Tyrosine recombinase xerC
 gi|156231402|gb|ABU56185.1| integrase family protein [Roseiflexus castenholzii DSM 13941]
          Length = 314

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 40/276 (14%), Positives = 96/276 (34%), Gaps = 26/276 (9%)

Query: 75  ISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDF------DYRKITTKHIRSGVESRK 127
           +  + +  A   +L+ N+  ++ +  +Q              D            +  R+
Sbjct: 5   VEAFLRHLADERNLSANTIAAYRTDLEQFCEFLHGRRLFAWHDVTHDDVLAFLIDLRERR 64

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----- 182
           +  S+  + + +++  F +   +  V  +P   ++ PK   +  R  T   + +      
Sbjct: 65  YASSTVARRVAAVKSFFTFLTGRGIVQRDPTERIDSPKVDRDLPRALTPRQVDELLELPL 124

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241
           +S   E  + +   E L  +G+R S+     V  +      ++   K G +  + +    
Sbjct: 125 RSPTPERIRDKAMLELLYATGVRVSELVALNVNDVDLERNEVRCIGKNGRVRVLPINGSA 184

Query: 242 MKLL------------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHG 288
              L              +    E  F+N+  +++    F +  K  A + G+ + + H 
Sbjct: 185 ATALEEYFDISRNQLARGSGSSTEALFLNHRGKRLTRQGFWLILKQYAEELGLSDLTPHV 244

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +R   A    +AG     +    G  ++   + YT 
Sbjct: 245 LRHSFAVHMLNAGFDLRAVQELLGHTSISTTQIYTH 280


>gi|153810458|ref|ZP_01963126.1| hypothetical protein RUMOBE_00839 [Ruminococcus obeum ATCC 29174]
 gi|149833637|gb|EDM88718.1| hypothetical protein RUMOBE_00839 [Ruminococcus obeum ATCC 29174]
          Length = 296

 Score =  139 bits (351), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 40/283 (14%), Positives = 100/283 (35%), Gaps = 25/283 (8%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGD------FDYRKITTKHIRSGVESRKHTP 130
            Y + A     + N+ IS+E    ++ R   +       +  K   +     ++      
Sbjct: 12  AYMREA--KKASQNTEISYERDLKKLARYLRNQKIMDFSEVTKTDLQGYLKELQKENLAL 69

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----W 186
           S+  + + S+R L+ + +R   +  +P  +++ PK + +     + E++ +         
Sbjct: 70  STISRNIASIRALYHYMIRTGKMQEDPSETLKPPKLEKKMPEILSVEEVDRLLKQPNLNT 129

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD------- 239
            +G +     E +  +G+R S+     +  +   +  +    +     + + +       
Sbjct: 130 PKGIRDNAMMELMYATGMRVSELIHLQITDINLQMGYVICHDSEKERIIPIGNVSRNAIL 189

Query: 240 GFMKLLAMTPIGK---ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSA 294
            +M+      +      + F N   + M+   F    K  A  AG+++  + H +R   A
Sbjct: 190 QYMEHSRGFFVKNKKESSLFTNCSGKSMSRQGFWKVLKGYAVDAGIHRDITPHTLRHSFA 249

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
                 GA    +    G   +   + Y  G +  R+     +
Sbjct: 250 VHMLQNGADVKSVQEMLGHSDISSTQIYL-GMNVARMRDVYMK 291


>gi|329905896|ref|ZP_08274277.1| site-specific tyrosine recombinase [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327547427|gb|EGF32250.1| site-specific tyrosine recombinase [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 304

 Score =  139 bits (351), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 46/273 (16%), Positives = 98/273 (35%), Gaps = 23/273 (8%)

Query: 86  SLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTSM 140
            LA NS  ++          + ++       +T   I +   +R      ++A + L  +
Sbjct: 27  GLAKNSLEAYRRDLTAFALWLAQASQTGLLAVTGADINAYFAARHDASKATTANRRLAVL 86

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAF 196
           +  ++ A+R + ++ +PCL +   K+     +  ++ +++   +        G + R   
Sbjct: 87  KRFYQLALRNKQISDDPCLKLHSAKQPPRFPKTLSEANVEALLAAPDVSTPLGLRDRTML 146

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-VELPDGFMKLLAMTPIG---- 251
           E +  SGLR ++        L  N   ++    G     V   +     +    +     
Sbjct: 147 ELMYASGLRVTELVLLKSIELSLNDGVVRVTGKGNKTRLVPFGEEARSWIERYLLEARAQ 206

Query: 252 ------KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGAT 303
                  +  F+      M    F +  K  A +A ++   S H +R   AT   + GA 
Sbjct: 207 ILDGQMDDALFVTARGGPMTRQMFWVVVKKCAVRADIHAPLSPHTLRHAFATHLLNHGAD 266

Query: 304 AHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
              +    G   +   + YT  A R RL + ++
Sbjct: 267 LRVVQLLLGHADISTTQIYTHVA-RERLKVLHA 298


>gi|261364728|ref|ZP_05977611.1| tyrosine recombinase XerD [Neisseria mucosa ATCC 25996]
 gi|288567026|gb|EFC88586.1| tyrosine recombinase XerD [Neisseria mucosa ATCC 25996]
          Length = 291

 Score =  139 bits (351), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 45/273 (16%), Positives = 101/273 (36%), Gaps = 19/273 (6%)

Query: 74  LISEYRKSAHWGS-LAVNSRISFESYFDQIIRKSGDFDYRKI--TTKHIRSGVESRKHTP 130
           LI +  +S      L+ N+   +    ++I  +  +  Y  +      +   V +     
Sbjct: 5   LIDKLLESLWLQDRLSHNTLQGYRRDLEKIAARLEEGGYTWLNAEVADLADAVYAADEKH 64

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----W 186
           SS  + L++ + L+ W    E    NP   ++ PK+  +     T+  +++  +      
Sbjct: 65  SSQARALSACKRLYAWLEETERRTDNPTRFLKAPKQTQKLPTLITEAQIEKLLAAPDTET 124

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-ELPDGFMKLL 245
             G + +   E +  +GLR +++ +  +  L  N   I+T   G  + +  + +  +  +
Sbjct: 125 PHGLRDKALLEVMYATGLRVTEAVKLQLGDLDLNRGCIRTIGKGDKLRIVPMGEEAVYWV 184

Query: 246 AMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSA 294
                               F++  +  ++     +  K  A  AG+   S HG+R   A
Sbjct: 185 ERYCAESRPLLLKNKICDEVFVSQKRSGISRQLAWMIVKNYAETAGITSLSPHGLRHAFA 244

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           T   + G     +    G   ++  + YT  A+
Sbjct: 245 THLVNHGVDLRAVQLMLGHANINTTQIYTHVAN 277


>gi|261345596|ref|ZP_05973240.1| tyrosine recombinase XerD [Providencia rustigianii DSM 4541]
 gi|282566076|gb|EFB71611.1| tyrosine recombinase XerD [Providencia rustigianii DSM 4541]
          Length = 300

 Score =  139 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 48/283 (16%), Positives = 100/283 (35%), Gaps = 27/283 (9%)

Query: 74  LISEYRKSAHW--GSLAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVESR 126
           LI ++  +  W    LA N+  S+ +    +      ++    + + I  +   +     
Sbjct: 9   LIEQFLDTI-WLEQDLAENTLASYRNDLQSLDRWLDAQQLHLENVQSIDLQSFLAERIDS 67

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ----QF 182
            +  +S+ + L++MR LF++  R++    +P   +  PK      +  +++ ++      
Sbjct: 68  GYKAASSARLLSAMRRLFQYLYREKIRLDDPSAVIAAPKIPQRLPKDLSEKQVEDLLNAP 127

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241
            +  S   + +   E L   GLR S+        +      I+   K      + L +  
Sbjct: 128 ATEDSLELRDKAMLEVLYACGLRVSELIGLTFSDISLRQGVIRVVGKGDKERLIPLGEEA 187

Query: 242 MKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHG 288
           +  +                 +  F +    KM    F    K  A  A ++    S H 
Sbjct: 188 IYWVEKYLEYGRPDLLNGKASDVLFPSKRGTKMTRQTFWHRIKYYAVLANIDGESLSPHV 247

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIR 330
           +R   AT   + GA    +    G   +   + YT  A +R+R
Sbjct: 248 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLR 290


>gi|227833151|ref|YP_002834858.1| integrase/recombinase [Corynebacterium aurimucosum ATCC 700975]
 gi|262182358|ref|ZP_06041779.1| site-specific tyrosine recombinase XerD [Corynebacterium
           aurimucosum ATCC 700975]
 gi|227454167|gb|ACP32920.1| integrase/recombinase [Corynebacterium aurimucosum ATCC 700975]
          Length = 292

 Score =  139 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 54/268 (20%), Positives = 95/268 (35%), Gaps = 28/268 (10%)

Query: 90  NSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWA 147
           N R     Y D +   SG  D R++T  H+ + +   + +   SSA + L   R L K+A
Sbjct: 16  NYRRDINRYVDWLAE-SGITDLRRVTRAHVENYLVFLRESLAQSSASRALIVARGLHKFA 74

Query: 148 VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF-------KSFWSEGSQPRLAFEFLL 200
           + +  +  +    V  PKR        + +D++         +S      + R   E L 
Sbjct: 75  LAEGMIEEDVAAEVSPPKRAQALPETLSVQDVEALLNAIPTDESATPIDIRDRALLEMLY 134

Query: 201 YSGLRCSDSCRAGVQHLQNNI------FSIKTQKTGTIITVEL--------PDGFMKLLA 246
            +G R S+     V  +            + + K      V L         +  ++   
Sbjct: 135 GTGARISEVISLSVDDVTGEGPASVRDILVLSGKGDKQRLVPLGSHAVTAVENYLVRARP 194

Query: 247 MTPIGKET-FFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGAT 303
           +   G     F+N   + ++        K  A +A +    S H +R   AT   + GA 
Sbjct: 195 VLATGASHSLFLNTRGKALSRQSAWAAIKTAAQRAHLSTKISPHTLRHSFATHLLEGGAD 254

Query: 304 AHELMATYGWKTVDQAETYTK-GADRIR 330
              +    G  +V   + YT   AD +R
Sbjct: 255 VRTVQELLGHSSVTTTQIYTHVTADSLR 282


>gi|312883960|ref|ZP_07743677.1| site-specific tyrosine recombinase XerD [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309368418|gb|EFP95953.1| site-specific tyrosine recombinase XerD [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 302

 Score =  139 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 41/265 (15%), Positives = 97/265 (36%), Gaps = 23/265 (8%)

Query: 85  GSLAVNSRISFE----SYFDQIIRKSGDFDYRKIT-TKHIRSGVESRKHTPSSAIQFLTS 139
             L+ N+  S+          +   +   ++  I+  +  +S +    +  +S  + L++
Sbjct: 23  RGLSENTLSSYRNDLFKLLKWMFENNYRLNFISISGLQDFQSWLVDEGYKQTSRARMLSA 82

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK----SFWSEGSQPRLA 195
           +R LF++  R+   + +P   +  PK      +  +++ +        +      + +  
Sbjct: 83  LRRLFQYMHRERLRSDDPSALLVSPKLPKRLPKDLSEQQVDALLSAPDANNPIELRDKAM 142

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAMTPIGK-- 252
            E L  +GLR ++     ++++      ++ T K G    V + +  ++ +         
Sbjct: 143 LELLYATGLRVTELVSLTMENMSLRQGVVRVTGKGGKERLVPMGEDAIEWIETFLHQGRS 202

Query: 253 --------ETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG 301
                   +  F +   ++M    F    K  A  AG++    S H +R   AT   + G
Sbjct: 203 ELLGEKTSDVVFPSKRAKQMTRQTFWHRIKYYAMLAGIDSELLSPHVLRHAFATHLLNHG 262

Query: 302 ATAHELMATYGWKTVDQAETYTKGA 326
           A    +    G   +   + YT  A
Sbjct: 263 ADLRVVQMLLGHSDLSTTQIYTHVA 287


>gi|254710057|ref|ZP_05171868.1| Phage integrase [Brucella pinnipedialis B2/94]
 gi|256031552|ref|ZP_05445166.1| Phage integrase [Brucella pinnipedialis M292/94/1]
          Length = 247

 Score =  139 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 45/244 (18%), Positives = 80/244 (32%), Gaps = 8/244 (3%)

Query: 106 SGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVR-QEYVAINPCLSVERP 164
              FD  +     IR         P +A   +  +  +  +AV     ++ NPC  +++ 
Sbjct: 3   IAQFDLPQKIRPVIRKWRGEFADKPRTADYGMQVLSRVLSYAVDPLGKISQNPCEGIKQL 62

Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
            +       WT +D+ + K+  S   +   A +   ++GLR  D  R    H+ +N   +
Sbjct: 63  YKNDRAAIIWTDQDIARLKTKCSP--EVAWAVDLAAHTGLRAGDLLRLSWSHITDNAIIL 120

Query: 225 KTQKTG--TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
            T K+       + L      LL   P        N  K       F   F     +A +
Sbjct: 121 PTGKSRHTKEAVIPLYAELRALLQTIPRRSPIVLTNTRKAPWTVNGFGSSFSDCREEAKL 180

Query: 283 ---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
              +   H  R  +AT    AG +   +    GW+         +   R        ++I
Sbjct: 181 GDRDLHFHDFRGTAATKFYIAGLSERVIAEIMGWEEETVRNIIRRYVSRTAAIEATIKQI 240

Query: 340 SSVV 343
               
Sbjct: 241 DEAR 244


>gi|294634844|ref|ZP_06713366.1| tyrosine recombinase XerD [Edwardsiella tarda ATCC 23685]
 gi|291091717|gb|EFE24278.1| tyrosine recombinase XerD [Edwardsiella tarda ATCC 23685]
          Length = 299

 Score =  139 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 50/285 (17%), Positives = 103/285 (36%), Gaps = 27/285 (9%)

Query: 72  KWLISEYRKSAHW--GSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVESR- 126
           + LI ++   A W   +LA N+  S+      +       D      +   +++    R 
Sbjct: 6   QALIEQFL-DALWLEKNLAENTLASYRQDLRTLAEWLAYHDLSLLTASPGDLQNFFAQRV 64

Query: 127 --KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
              +  SS+ + L+++R  +++  R+     +P   +  PK      +  ++  +     
Sbjct: 65  DGGYKASSSARLLSALRRCYQYLYRETLRTDDPSAQLAAPKLPQRLPKDLSEAQVDALLQ 124

Query: 185 FW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPD 239
                     + +   E L  +GLR S+    G + +      ++   K      V L +
Sbjct: 125 APAIDNPLELRDKAMLELLYATGLRVSELVGLGQEDVSLRQGVVRVIGKGNKERLVPLGE 184

Query: 240 G-------FMKLLAMTPIGKET---FFINNDKQKMNATQFSIWFKAKATKAGVN---KSA 286
                   +++      +  +T    F +N  ++M    F    K  A  AG++    S 
Sbjct: 185 EAIYWIEYYLEYGRPWLVNGQTVAALFPSNRARQMTRQTFWHRIKHYAVLAGIDTQRLSP 244

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIR 330
           H +R   AT   + GA    +    G   +   + YT  A +R+R
Sbjct: 245 HVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLR 289


>gi|1303994|dbj|BAA12649.1| YqkM [Bacillus subtilis]
          Length = 296

 Score =  139 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 45/264 (17%), Positives = 98/264 (37%), Gaps = 24/264 (9%)

Query: 85  GSLAVNSRISFESYFD----QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI---QFL 137
             L+ N+ +S+E         +       D+  +T  HI   ++  K +  S     + L
Sbjct: 16  RGLSQNTIVSYERDLKSYSLYLTETLHVTDWNHVTRIHIIQYLKHLKDSGKSGKTSARHL 75

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPR 193
            S+R   ++ +R++    +P + +E  K +    +     ++++           G + +
Sbjct: 76  ASIRSFHQFLLREKVTDKDPSVHIETQKTERALPKVLALNEVERLLDTPKLTSPFGYRDK 135

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLL---AMTP 249
              E L  +G+R S+        +  ++  I+   K      V + +     +       
Sbjct: 136 AMLELLYATGIRVSEMIELKTADVHLSMGFIRCFGKGRKERIVPIGEAAASAIEEYMTKA 195

Query: 250 IGK-------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
            GK       +  F+N+  ++++   F    K  A +AG+ K  + H +R   AT   + 
Sbjct: 196 RGKLLKNNVSDALFLNHHGKQISRQGFWKNLKKIALEAGIKKELTPHTLRHSFATHLLED 255

Query: 301 GATAHELMATYGWKTVDQAETYTK 324
           GA    +    G   +   + YT 
Sbjct: 256 GADLRAVQEMLGHADISTTQIYTH 279


>gi|310821627|ref|YP_003953985.1| Tyrosine recombinase XerD [Stigmatella aurantiaca DW4/3-1]
 gi|309394699|gb|ADO72158.1| Tyrosine recombinase XerD [Stigmatella aurantiaca DW4/3-1]
          Length = 310

 Score =  139 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 48/271 (17%), Positives = 103/271 (38%), Gaps = 26/271 (9%)

Query: 85  GSLAVNSRISFES----YFDQIIRKSGDFDYRKITTKHIRS---GVESRKHTPSSAIQFL 137
             L+  +  ++ +    YF+ +  + G  D  ++  + + +    + +R  +  S  + L
Sbjct: 16  RGLSGKTVDAYAADLTVYFEDLRAR-GVLDVARVKQEDVTAHLMQLGARGLSKRSQARHL 74

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FWSEGSQPR 193
            ++R   ++ + +++   +P   ++ P+   +     T E+++Q  +        G + +
Sbjct: 75  AAVRGFHRFLIAEKHAEKDPTEDLDTPRSARKLPSFLTLEEVEQLLAAPDERHPTGMRDK 134

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDGFMKLLAM----- 247
              E L  +GLR S+ C  G+  +Q     +  +  G+    V +    ++ +       
Sbjct: 135 AMLELLYATGLRVSELCSLGINDVQLGAGYLVAKGKGSKERVVPVGSVAVEKVQAYLGGP 194

Query: 248 -----TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
                      + FI           F    K  A KAG+ K  S H +R   AT   + 
Sbjct: 195 RQHLLGKRQSRSLFITPRGGAFTRQGFWKLLKRYALKAGIRKPISPHKLRHSFATHLVER 254

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRL 331
           GA    + A  G   +   + YT   +  RL
Sbjct: 255 GADLRAVQAMLGHADLATTQIYTH-VNSARL 284


>gi|171463113|ref|YP_001797226.1| tyrosine recombinase XerD [Polynucleobacter necessarius subsp.
           necessarius STIR1]
 gi|171192651|gb|ACB43612.1| tyrosine recombinase XerD [Polynucleobacter necessarius subsp.
           necessarius STIR1]
          Length = 307

 Score =  139 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 51/269 (18%), Positives = 87/269 (32%), Gaps = 24/269 (8%)

Query: 86  SLAVNSRISFESYF----DQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMR 141
            LA NS  ++          + + SG   Y              R    ++A + LT  +
Sbjct: 28  GLAQNSLAAYRRDLLLLAQWLYKDSGGDLYGVTEKDLTAYIAYRRADKATTANRRLTVFK 87

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLAFE 197
             ++ A+R   V  +PC+ +   K+     +  +++ +    +        G + R   E
Sbjct: 88  RFYRHALRMNLVKSDPCMGLRAAKQALRFPKTLSEDQVTALLNAPDIETSLGLRDRTMLE 147

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKT--QKTGTIITVELPDGFMKLLAMTPIGKETF 255
            +  SGLR S+        L  N   ++    K G    V       + L        T 
Sbjct: 148 LMYASGLRVSEIVSLKTAALGLNEGVVRVVNGKGGKERLVPFGGEAGQWLRRYLAEARTP 207

Query: 256 FI-----------NNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGA 302
            +            +    +    F    K  AT A +    S H +R   AT   + GA
Sbjct: 208 LLEGKTSDAVFVGRHTGTGLTRQAFWALIKRYATVANISVALSPHTLRHAFATHLLNHGA 267

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRL 331
               +    G   +   + YT  A R RL
Sbjct: 268 DLRVVQLLLGHADISTTQIYTHVA-RERL 295


>gi|313887306|ref|ZP_07820997.1| phage integrase, N-terminal SAM domain protein [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|312923225|gb|EFR34043.1| phage integrase, N-terminal SAM domain protein [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|332176305|gb|AEE11995.1| Tyrosine recombinase xerC [Porphyromonas asaccharolytica DSM 20707]
          Length = 314

 Score =  139 bits (351), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 52/283 (18%), Positives = 99/283 (34%), Gaps = 24/283 (8%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKH---IRSGVES 125
           + LI  Y+        L+ NS  S+    D++     D     R++  +H     + +  
Sbjct: 7   QQLILRYKTYLRLEQHLSDNSIDSYLYDVDKLYTYIEDMGLSLREVELQHLNNFAAHLLD 66

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
              +  S  + L+ ++  F++   +E +  +P   ++ P    +     T  ++      
Sbjct: 67  LGISMRSLARVLSGVKSFFRFLTLEEEIERDPTDMLQTPPIHKKLPEVLTLAEIDSLLGA 126

Query: 186 WSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240
             E     S+     E L   GLR S+ C      +  +   +    K      V +   
Sbjct: 127 IDEDRIEASRDTAIIEVLYSCGLRVSELCGLTYSDVFLDEGYLHVWGKGRKERLVPMSPK 186

Query: 241 FMKLLA----------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288
            +  +             P   +  FI+   Q ++        +  A +AG+ K  S H 
Sbjct: 187 AVADVQRYLNDPYRYNAKPEYDQYLFISRRGQPISRITVFCLIRTLAEQAGIQKEISPHT 246

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           +R   AT   + GA  H +    G +++   E YT   DR  L
Sbjct: 247 LRHSFATHLLEGGADLHAIQLMMGHESIATTEVYTH-VDRSAL 288


>gi|260588143|ref|ZP_05854056.1| integrase/recombinase XerD [Blautia hansenii DSM 20583]
 gi|260541670|gb|EEX22239.1| integrase/recombinase XerD [Blautia hansenii DSM 20583]
          Length = 294

 Score =  139 bits (350), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 43/257 (16%), Positives = 102/257 (39%), Gaps = 22/257 (8%)

Query: 88  AVNSRISFESYF---DQIIRKSGDFDYRKITTK---HIRSGVESRKHTPSSAIQFLTSMR 141
           + N+ +S+E      +Q +++ G  ++ +++          +E +    SS  + + S+R
Sbjct: 19  SRNTEVSYERDLKKLEQFLKQEGILEWHQVSAVLLNSYIMYLERKNFAASSISRSVASIR 78

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ----QFKSFWSEGSQPRLAFE 197
             F++  ++E    NP   ++ PK + +     T +++     Q K   ++G + R   E
Sbjct: 79  AFFQYLCQRECWRENPAEGLKAPKIEKKAPGILTVDEVDLLLSQPKENTAKGVRDRAMLE 138

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP-------DGFMKLLAMTPI 250
            L  +G+R S+     ++ +   +  +   ++     +          + +M    +  +
Sbjct: 139 LLYATGIRVSELIHLTLRDVNLKLGYLTCSQSERERVIPFGATAKTAVEAYMAWARVELL 198

Query: 251 GKET---FFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAH 305
           G+ +    F+N   + M+   F    K  A  AG+  + + H +R   A      GA   
Sbjct: 199 GENSSEWLFVNCSGKSMSRQGFWKILKGYAVSAGIQQDITPHTLRHSFAAHLVQNGADLK 258

Query: 306 ELMATYGWKTVDQAETY 322
            +    G   +   + Y
Sbjct: 259 SVQEMMGHSDISTTQIY 275


>gi|126640334|ref|YP_001083318.1| site-specific tyrosine recombinase [Acinetobacter baumannii ATCC
           17978]
          Length = 250

 Score =  139 bits (350), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 43/236 (18%), Positives = 79/236 (33%), Gaps = 16/236 (6%)

Query: 110 DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
           D+       +   +     +P S  + L+++R  +K+   Q+  + NP  +   PK    
Sbjct: 3   DWTSDDISDVLIELTKVGKSPRSIARCLSALRQFYKFLREQKLRSDNPVATHHSPKIGRA 62

Query: 170 GIRPWTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225
             +  ++ED++            G + R  FE L   GLR S+     ++ +      ++
Sbjct: 63  LPKDLSEEDVEALIQAPDITTALGLRDRAMFEVLYACGLRVSELLNLRLELINLKQGYLR 122

Query: 226 -TQKTGTIITVELPDGFMKLLAMT---------PIGKETFFINNDKQKMNATQFSIWFKA 275
            T K      V L       +                +  F+      M+   F    K 
Sbjct: 123 ITGKGNKERLVPLGQYACDWVERYLNEARPQLYKSSTDYLFLTQHGGIMSRQNFWYAIKH 182

Query: 276 KATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            A +A +    S H +R   AT   + GA    +    G   +   + YT  A   
Sbjct: 183 YALQANIQAELSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVR 238


>gi|206561110|ref|YP_002231875.1| site-specific tyrosine recombinase XerD [Burkholderia cenocepacia
           J2315]
 gi|198037152|emb|CAR53073.1| putative integrase/recombinase [Burkholderia cenocepacia J2315]
          Length = 316

 Score =  139 bits (350), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 48/268 (17%), Positives = 89/268 (33%), Gaps = 22/268 (8%)

Query: 85  GSLAVNSRISFES---YFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSSAIQFLTSM 140
             LA N+  ++      F Q +  +            +   + +R     +S+ + L+  
Sbjct: 39  HGLARNTLDAYRRDLVLFSQWLAATHAAPLDGADEAMVTGYIAARSDGKATSSNRRLSVF 98

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAF 196
           R  + WAVR+   + +P L +   K+        ++  ++        G+    + R   
Sbjct: 99  RRYYGWAVREHRASADPTLRITSAKQAARFPSTLSEAQVEALLGAPDIGTPLGLRDRTML 158

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLLAM 247
           E +  SGLR S+        +  N   ++    G+   +          +          
Sbjct: 159 ELMYASGLRVSELVTLKTVEVGLNEGVVRVMGKGSKERLVPFGEVAHGWIERYLRDARPA 218

Query: 248 T--PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGAT 303
                  +  F+      M   QF    K  A +A V  + S H +R   AT   + GA 
Sbjct: 219 LLGARAADALFVTARGDGMTRQQFWNIIKRHAQQADVRAHLSPHTLRHAFATHLLNHGAD 278

Query: 304 AHELMATYGWKTVDQAETYTKGADRIRL 331
              +    G   +   + YT  A R RL
Sbjct: 279 LRVVQLLLGHSDISTTQIYTHVA-RERL 305


>gi|218131523|ref|ZP_03460327.1| hypothetical protein BACEGG_03142 [Bacteroides eggerthii DSM 20697]
 gi|217986455|gb|EEC52792.1| hypothetical protein BACEGG_03142 [Bacteroides eggerthii DSM 20697]
          Length = 316

 Score =  139 bits (350), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 52/274 (18%), Positives = 99/274 (36%), Gaps = 23/274 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQII-----RKSGDFDYRKITTKHIRSGVESRK 127
           +I +Y++      SLA N+  ++ +   +++           +      +   +G+    
Sbjct: 16  IIRKYQQYLKLEKSLASNTFDAYMTDLQKLLHFLEGENIEVGNVTPDDLQRFAAGLHDIG 75

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
             P S  + L+ ++  F +    +Y+  +P   +E PK   +     T E++ +  S   
Sbjct: 76  IHPRSQARILSGIKSFFHFLTVADYLETDPSELLEGPKIGFKIPEVLTVEEIDRIISAVD 135

Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-VELPDGFM 242
               EG + R   E L   GLR S+ C   +  L      IK +  G+    V +    +
Sbjct: 136 MDKKEGQRNRAILETLYSCGLRVSELCNLKLSDLYFEEGFIKVEGKGSKQRLVPISPRAI 195

Query: 243 KLLAMTPIGK----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290
           K +      +          +  F+      ++        K  A K G+ K  S H  R
Sbjct: 196 KEIKYWLTDRNLGKIKKGYEDYVFLARWGNNISRIMVFHMIKELAEKTGITKNISPHTFR 255

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              AT   + GA    +    G +++   E YT 
Sbjct: 256 HSFATHLLEGGANLRAIQCMLGHESIATTEIYTH 289


>gi|262043692|ref|ZP_06016801.1| phage integrase family site-specific recombinase [Klebsiella
           pneumoniae subsp. rhinoscleromatis ATCC 13884]
 gi|259039030|gb|EEW40192.1| phage integrase family site-specific recombinase [Klebsiella
           pneumoniae subsp. rhinoscleromatis ATCC 13884]
          Length = 302

 Score =  139 bits (350), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 49/298 (16%), Positives = 97/298 (32%), Gaps = 30/298 (10%)

Query: 41  STFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD 100
           S     Y + +   T              T   L   + KSA++  L   ++  +  +  
Sbjct: 4   SQLWARYEALIDEQTNV-----------MTFSKLWGLFLKSAYYLELKPRTQKDYLQHQK 52

Query: 101 QIIRKSGDFDYRKITTKHIRSGVESRK-HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL 159
           +++   G     KI T+ IR  ++ R   + + A   ++SM  +F+W   +  V  NPC 
Sbjct: 53  KLLAVFGKITADKIKTEDIRMFMDRRGLQSKTQANHEMSSMSRVFRWGFERGMVKGNPCQ 112

Query: 160 SVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN 219
            V + K    G R  T  + +       +    R A E       R +D      + +  
Sbjct: 113 GVSKFKAVARG-RYITDAEYEAIYKEADD--VVRTAMEIAYLCAARLADVLGMQWRQVTP 169

Query: 220 NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET------FFINNDKQKMNATQFSIWF 273
               I+  K       +  D   +   +      +        + +     +   FS  +
Sbjct: 170 EGIFIQQGKNNVSQIKQWTDRLKQAFELAKTFSNSGNPGAFVLMGSHGSGFSKRGFSHRW 229

Query: 274 KAKATKAG------VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           +    KA       ++ + H + K       +   ++ +     G KT  Q   Y + 
Sbjct: 230 EEARHKASVKLGYVLDCTFHDL-KAKGISDYE--GSSRDKQLFSGHKTESQVLIYDRK 284


>gi|298208960|ref|YP_003717139.1| putative tyrosine recombinase [Croceibacter atlanticus HTCC2559]
 gi|83848887|gb|EAP86756.1| putative tyrosine recombinase [Croceibacter atlanticus HTCC2559]
          Length = 298

 Score =  139 bits (350), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 46/265 (17%), Positives = 95/265 (35%), Gaps = 30/265 (11%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYR--------KITTKHIRSGVESRKHTPSSAIQF 136
             L++NS  S+    +++++     D +         IT   +    +       S  + 
Sbjct: 18  RGLSLNSIKSYSYDVEKLMKFLEKNDLKTSPLKIDANITKAFVYDVAKHMNE--RSQARL 75

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQP 192
           ++ ++  F + V ++Y   NP   +E P+   +     + E++    +       EG + 
Sbjct: 76  ISGLKSFFNYLVFEDYRETNPVDLIESPRIGRKLPDTLSLEEIDNLIAHIDLSKPEGERN 135

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQH--LQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250
           R   + L   GLR S+     +     +     + T K      V + +   KL+++   
Sbjct: 136 RAMIDTLYSCGLRVSELITLNLSDLFFEEGFIKV-TGKGNKQRFVPIAEHTQKLISIYKT 194

Query: 251 G-----------KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS 297
                       ++T F+N   + +         K  + K G+ K  S H  R   AT  
Sbjct: 195 EIRNHQDIKKGHEDTLFLNRRGRGLTRAMIFTIVKNLSEKCGLQKTISPHTFRHSFATHL 254

Query: 298 ADAGATAHELMATYGWKTVDQAETY 322
            + GA    +    G +++   E Y
Sbjct: 255 LENGADLRAIQQMLGHESITTTEIY 279


>gi|297537324|ref|YP_003673093.1| integrase family protein [Methylotenera sp. 301]
 gi|297256671|gb|ADI28516.1| integrase family protein [Methylotenera sp. 301]
          Length = 333

 Score =  139 bits (350), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 68/340 (20%), Positives = 120/340 (35%), Gaps = 26/340 (7%)

Query: 2   TPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYI 61
           T +L LPP +     +HG   YYF     + IRL    +     A  + L G  P     
Sbjct: 6   TNNLDLPPHMQ---IKHG--AYYFVGRDKKWIRLSE--DKALALAKWAELEGEIPFPPNE 58

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121
             P K   +L  LI  Y         A ++    +   + + +       R +   HI  
Sbjct: 59  EKPIK--GSLGELIMRYMIEIA-PHKAKSTYQGNKLEAENLKKVFSKVQARAVLPTHIAK 115

Query: 122 GVESRKHT-PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
            +++R  T    A + +  +  ++ + +R   V  NPC+ V + K K    R     + +
Sbjct: 116 YLDTRGITSQVRANREIALLSHIYTYGMRWGVVNSNPCIGVAKHKEKGR-DRYIMDNEFE 174

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
             K+  SE     +  +    + LR  D     ++ + +    IK  KTG     E   G
Sbjct: 175 GVKNIASE--LIAIVMDMAYITALRKGDILSLKLEQVTDEGIWIKQNKTGAKQLYEWSIG 232

Query: 241 FMKLLAMT-----PIGKETFFINNDKQKMNATQFSIWF----KAKATKAGVNKSAHGVRK 291
              ++        PI     F     +  + + F   +       A + G   + H +R 
Sbjct: 233 LHDVVDRAKALKRPIRGLYLFCTRQGKPYSDSGFKAMWNRVQVKWAEQGGSRFTFHDIRA 292

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            + T + + G  A    +  G  +    E Y K  +  R+
Sbjct: 293 KALTDAKNLGMDA---QSLAGHSSAAMTEHYIKQREFKRV 329


>gi|317153262|ref|YP_004121310.1| tyrosine recombinase XerD [Desulfovibrio aespoeensis Aspo-2]
 gi|316943513|gb|ADU62564.1| tyrosine recombinase XerD [Desulfovibrio aespoeensis Aspo-2]
          Length = 307

 Score =  139 bits (350), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 54/267 (20%), Positives = 96/267 (35%), Gaps = 21/267 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYR--KITTKH---IRSGVESRKHTPSSAIQFLTS 139
             L+ NS   + +    ++    +  +R   +T +      + + +R     S  + L+S
Sbjct: 29  KGLSENSLSGYSADLASLLAFLEEKSFRLEDLTERTLFLYLTYLRARGLQSRSLARHLSS 88

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195
           +R  F +A+ Q +   +P   +E PK   +     T+E+M +  +        G + +  
Sbjct: 89  LRGFFAFALDQRWYKEDPGHLLENPKLPKKLPEFLTREEMSRVLALPETATKLGMRDQAM 148

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMK-----LLAMTP 249
            E L  +GLR S+     V         ++   K      V +           LL   P
Sbjct: 149 LELLYAAGLRVSELIEMKVLDYDAQTGLLRVFGKGAKERLVPIHYVAQDVLSRYLLNTRP 208

Query: 250 IGKETF---FINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATA 304
             +      F+N   + +         K  A KAG+ +S   H  R   AT   + GA  
Sbjct: 209 AFRPAVDFMFLNRSGKGLTRQGVWKLIKTYADKAGIKRSISPHTFRHSFATHLLEGGADL 268

Query: 305 HELMATYGWKTVDQAETYTK-GADRIR 330
             +    G   +   E YT   A R+R
Sbjct: 269 RTVQMLLGHSDISATEIYTHIQAGRLR 295


>gi|242240703|ref|YP_002988884.1| tyrosine recombinase XerD [Dickeya dadantii Ech703]
 gi|242132760|gb|ACS87062.1| tyrosine recombinase XerD [Dickeya dadantii Ech703]
          Length = 299

 Score =  139 bits (350), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 44/265 (16%), Positives = 92/265 (34%), Gaps = 23/265 (8%)

Query: 85  GSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTS 139
            +LA N+  S+      +                  ++S +  R    +  +S+ + L++
Sbjct: 20  RNLAENTLQSYRRDLRTLAAWLAHHHASLSDARPDDLQSFLAERVDGGYKATSSARLLSA 79

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195
           MR LF++  R++    +P   +  PK      +  T+  ++   +          + +  
Sbjct: 80  MRRLFQYLYREKVRPDDPSAVLSSPKLPQRLPKDLTEAQVESLLAAPATDQPLELRDKAM 139

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG-------FMKLLAM 247
            E L  +GLR S+     +  +      ++   K      V L +        +++    
Sbjct: 140 LEVLYATGLRVSELVGLTMSDVSLRQGVVRVIGKGNKERLVPLGEEAVYWVEQYLEYGRP 199

Query: 248 TPIGKETF---FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG 301
             +  +T    F +   ++M    F    K  A  A ++    S H +R   AT   + G
Sbjct: 200 WLLDGQTLDVMFPSTRGRQMTRQTFWHRIKHYAVLASIDSARLSPHVLRHAFATHLLNHG 259

Query: 302 ATAHELMATYGWKTVDQAETYTKGA 326
           A    +    G   +   + YT  A
Sbjct: 260 ADLRVVQMLLGHSDLSTTQIYTHVA 284


>gi|291618684|ref|YP_003521426.1| XerD [Pantoea ananatis LMG 20103]
 gi|291153714|gb|ADD78298.1| XerD [Pantoea ananatis LMG 20103]
          Length = 297

 Score =  139 bits (350), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 51/271 (18%), Positives = 100/271 (36%), Gaps = 24/271 (8%)

Query: 85  GSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTS 139
            +LA N+  S+      +             ++   ++  +  R    +  SS+ + L++
Sbjct: 18  RNLAQNTLSSYRQDLQTLTGWLAHHGLTLTTLSAPDLQQFLAERLEGGYKASSSARLLSA 77

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLA 195
           MR LF++  R++    +P   +  PK      +  ++  + +             + +  
Sbjct: 78  MRRLFQYLYREKMRTDDPSAMLAAPKLPQRLPKDLSEAQVDRLLQAPDVNVPLELRDKAM 137

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVEL-------PDGFMKLLAM 247
            E L  +GLR S+     +  +      ++   K      V L        + +M+    
Sbjct: 138 LELLYATGLRVSELVGLTLNDVSLRQGVVRVIGKGNKERLVPLGEEAVHWLEYYMEHGRP 197

Query: 248 TPIGKET---FFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG 301
             +  +T   FF +N  Q+M    F    K  A  AG++    S H +R   AT   + G
Sbjct: 198 WLLNGQTLDVFFPSNRAQQMTRQTFWHRIKHYAMLAGIDSEKLSPHVLRHAFATHLLNHG 257

Query: 302 ATAHELMATYGWKTVDQAETYTKGA-DRIRL 331
           A    +    G   +   + YT  A +R+RL
Sbjct: 258 ADLRVVQMLLGHSDLSTTQIYTHVATERLRL 288


>gi|254251586|ref|ZP_04944904.1| Site-specific recombinase XerD [Burkholderia dolosa AUO158]
 gi|124894195|gb|EAY68075.1| Site-specific recombinase XerD [Burkholderia dolosa AUO158]
          Length = 316

 Score =  139 bits (350), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 49/268 (18%), Positives = 88/268 (32%), Gaps = 22/268 (8%)

Query: 85  GSLAVNSRISFES---YFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSSAIQFLTSM 140
             LA N+  ++      F Q +  + D          +   + +R     +S+ + L+  
Sbjct: 39  HGLARNTLDAYRRDLMLFSQWLAATHDAPLDAADEAMVTGYIAARSDGKATSSNRRLSVF 98

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAF 196
           R  + WAVR+   + +P L +   K+        ++  ++            G + R   
Sbjct: 99  RRYYGWAVREHRASADPTLRITSAKQAARFPSTLSEAQVEALLGAPDIDTPLGLRDRTML 158

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLLAM 247
           E +  SGLR S+        +  N   ++    G+   +          +          
Sbjct: 159 ELMYASGLRVSELVTLKTVEVGLNEGVVRVMGKGSKERLVPFGEVAHGWIERYLRDARPA 218

Query: 248 T--PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGAT 303
                  +  F+      M   QF    K  A  A V  + S H +R   AT   + GA 
Sbjct: 219 LLGARAADALFVTARGDGMTRQQFWNIIKRHARHADVRAHLSPHTLRHAFATHLLNHGAD 278

Query: 304 AHELMATYGWKTVDQAETYTKGADRIRL 331
              +    G   +   + YT  A R RL
Sbjct: 279 LRVVQLLLGHSDISTTQIYTHVA-RERL 305


>gi|218701603|ref|YP_002409232.1| site-specific tyrosine recombinase XerD [Escherichia coli IAI39]
 gi|254037938|ref|ZP_04871996.1| site-specific tyrosine recombinase [Escherichia sp. 1_1_43]
 gi|218371589|emb|CAR19428.1| site-specific tyrosine recombinase [Escherichia coli IAI39]
 gi|226839562|gb|EEH71583.1| site-specific tyrosine recombinase [Escherichia sp. 1_1_43]
          Length = 298

 Score =  139 bits (350), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 44/270 (16%), Positives = 98/270 (36%), Gaps = 24/270 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESR---KHTPSSAIQFLTS 139
            +LA N+  ++      ++            + +  +++ +  R    +  +S+ + L++
Sbjct: 19  KNLAENTLNAYRRDLSMMVEWLHHRGLTLATVQSDDLQALLAERLEGGYKATSSARLLSA 78

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195
           +R LF++  R+++   +P   +  PK      +  ++  +++             + +  
Sbjct: 79  VRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLIDQPLELRDKAM 138

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKET 254
            E L  +GLR S+     +  +      ++   K      V L +  +  L         
Sbjct: 139 LEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRP 198

Query: 255 FFIN----------NDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG 301
           + +N             Q+M    F    K  A  AG++    S H +R   AT   + G
Sbjct: 199 WLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHG 258

Query: 302 ATAHELMATYGWKTVDQAETYTKGA-DRIR 330
           A    +    G   +   + YT  A +R+R
Sbjct: 259 ADLRVVQMLLGHSDLSTTQIYTHVATERLR 288


>gi|238855202|ref|ZP_04645521.1| tyrosine recombinase XerD [Lactobacillus jensenii 269-3]
 gi|260664565|ref|ZP_05865417.1| tyrosine recombinase XerD [Lactobacillus jensenii SJ-7A-US]
 gi|282932504|ref|ZP_06337929.1| tyrosine recombinase XerD [Lactobacillus jensenii 208-1]
 gi|313471969|ref|ZP_07812461.1| tyrosine recombinase XerD [Lactobacillus jensenii 1153]
 gi|238832094|gb|EEQ24412.1| tyrosine recombinase XerD [Lactobacillus jensenii 269-3]
 gi|260561630|gb|EEX27602.1| tyrosine recombinase XerD [Lactobacillus jensenii SJ-7A-US]
 gi|281303453|gb|EFA95630.1| tyrosine recombinase XerD [Lactobacillus jensenii 208-1]
 gi|313449040|gb|EFR61308.1| tyrosine recombinase XerD [Lactobacillus jensenii 1153]
          Length = 300

 Score =  139 bits (350), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 42/263 (15%), Positives = 99/263 (37%), Gaps = 24/263 (9%)

Query: 85  GSLAVNSRISFESYFDQIIR-----KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
             L+ N+  S++   +Q +      K  D+    +      +         S+  + +T+
Sbjct: 20  RGLSKNTVNSYQLDLNQFVEYLDKEKISDWPEDPLVIDSYLAKQRDEGKKTSTISRGITT 79

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195
           +R  +++ +RQ  + ++P + ++ PK++       +++++ +  +      + G + R  
Sbjct: 80  LRRFYRYLLRQHILVVDPLIQIDTPKQEKRLPLALSQKEVSELLAQPNLNTATGLRDRAI 139

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFM------------ 242
            E L  +G+R S+        L  ++  I+   K      V + D  +            
Sbjct: 140 LELLYATGMRVSELINLKETDLHTDLKIIRVLGKGSKERLVPVTDFALNWVDKYLKEVRD 199

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
             L    +  +  F+NN   ++         K  +  A ++K  + H +R   AT   + 
Sbjct: 200 PALLKKGVACDFLFLNNRAGQLTRQAVWQSIKKYSKLARIDKDITPHTLRHTFATHLLEN 259

Query: 301 GATAHELMATYGWKTVDQAETYT 323
           GA    +    G   +   + YT
Sbjct: 260 GADLRVVQEILGHSDISTTQIYT 282


>gi|290476402|ref|YP_003469307.1| site-specific tyrosine recombinase [Xenorhabdus bovienii SS-2004]
 gi|289175740|emb|CBJ82543.1| site-specific tyrosine recombinase [Xenorhabdus bovienii SS-2004]
          Length = 318

 Score =  139 bits (349), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 52/307 (16%), Positives = 108/307 (35%), Gaps = 30/307 (9%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHW--GSLAVNSRISFE---SYFDQIIRK 105
           L+ +   ++  + P     +   LI ++  +  W    LA N+  S+       +  +  
Sbjct: 7   LSENYASQDKSSEPAPPANS---LIEQFLDTI-WLEKDLAENTLSSYRLDLQALNNWLVY 62

Query: 106 SGD--FDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163
           SG        I  +   +      +  SS+ + L++MR LF++  R++    +P   +  
Sbjct: 63  SGHDLLSVESIELQLFLAERVDSGYKASSSARLLSAMRRLFQYLYREKMRLDDPTALLSA 122

Query: 164 PKRKTEGIRPWTKEDM----QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN 219
           PK      +  +++ +        +      + +   E L   GLR S+     +  +  
Sbjct: 123 PKLPKRLPKDLSEKQVGDLLNTPLTDQPIELRDKAMLEVLYACGLRVSELVGLTLSDMSL 182

Query: 220 NIFSIKTQKTG-TIITVELPDGFMKLLAMT----------PIGKETFFINNDKQKMNATQ 268
               ++    G     V L +  +  L                 + FF +    +M    
Sbjct: 183 RQGVVRVVGKGNKERLVPLGEEALYWLEKYLEYGRPWLLNGSASDVFFPSKRGTQMTRQT 242

Query: 269 FSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           F    K  A  +G++    S H +R   AT   + GA    +    G   +   + YT  
Sbjct: 243 FWHRIKHYAVLSGIDTERLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTYV 302

Query: 326 A-DRIRL 331
           A +R+++
Sbjct: 303 ATERLKM 309


>gi|134296744|ref|YP_001120479.1| site-specific tyrosine recombinase XerD [Burkholderia vietnamiensis
           G4]
 gi|134139901|gb|ABO55644.1| tyrosine recombinase XerD [Burkholderia vietnamiensis G4]
          Length = 320

 Score =  139 bits (349), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 45/268 (16%), Positives = 89/268 (33%), Gaps = 22/268 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH---IRSGVESRKH-TPSSAIQFLTSM 140
             L+ N+  ++        +      +  + +     +   + +R     +S+ + L+  
Sbjct: 43  HGLSRNTLDAYRRDLMLFSQWLAATHHAALDSADEAMVTGYIAARSDGKATSSNRRLSVF 102

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAF 196
           R  + WAVR+   + +P L +   K+        ++  ++        G+    + R   
Sbjct: 103 RRYYGWAVREHRASADPTLRIASAKQGARFPSTLSEAQVEALLGAPDIGTPLGLRDRTML 162

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLLAM 247
           E +  SGLR S+        +  N   ++    G+   +          +          
Sbjct: 163 ELMYASGLRVSELVTLKTVEVGLNEGVVRVMGKGSKERLVPFGEVAHGWIERYLRDARPA 222

Query: 248 T--PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGAT 303
                  +  F+      M   QF    K  A +A V  + S H +R   AT   + GA 
Sbjct: 223 LLGARAADALFVTARGDGMTRQQFWNIIKRHAQRADVRAHLSPHTLRHAFATHLLNHGAD 282

Query: 304 AHELMATYGWKTVDQAETYTKGADRIRL 331
              +    G   +   + YT  A R RL
Sbjct: 283 LRVVQLLLGHSDISTTQIYTHVA-RERL 309


>gi|78043995|ref|YP_360612.1| tyrosine recombinase XerC [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77996110|gb|ABB15009.1| tyrosine recombinase XerC [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 297

 Score =  139 bits (349), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 42/258 (16%), Positives = 86/258 (33%), Gaps = 18/258 (6%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG---VESRKHTPSSAIQFLTSMR 141
            + + N+  ++E              +  +    ++     +  +  +  +A + + ++R
Sbjct: 16  RNYSPNTIAAYERDILDFQEFLQGKSFLSVNEVDLKQFLVDILRKNRSRRTAARKMVALR 75

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFWSEGSQPRLAFE 197
             +++  R  ++  NP LS+E PK         T ++    ++  ++    G + R   E
Sbjct: 76  SFYRFLKRCGFIKENPALSLEIPKIPKTLPEVLTVDEVFKVIEGQENSTPTGLRNRALLE 135

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-EL----PDGFMKLLAMT---- 248
               +GLR  +     +  L      ++    G    +  L     D     L       
Sbjct: 136 LFYGAGLRIGEIAGLTLNDLDLTQGYVRVTGKGRRQRIVPLGKYALDSLKLYLEAGRPAF 195

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHE 306
               E  F+N     +              KAG+N+  + H  R   AT   + GA    
Sbjct: 196 KPKSEKLFLNQQGAGLTVRGIRYLISQIVKKAGLNRKITPHTFRHSYATHLLEGGADIRA 255

Query: 307 LMATYGWKTVDQAETYTK 324
           +    G K +   E YT 
Sbjct: 256 VQELLGHKRLSTTEIYTH 273


>gi|253687046|ref|YP_003016236.1| tyrosine recombinase XerD [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251753624|gb|ACT11700.1| tyrosine recombinase XerD [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 299

 Score =  139 bits (349), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 45/280 (16%), Positives = 96/280 (34%), Gaps = 26/280 (9%)

Query: 72  KWLISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFD-----YRKITTKHIRSGVE 124
           + LI ++   A W   +LA N+  S+      +       D      + +  +   +   
Sbjct: 6   QALIEQFL-DALWLERNLAENTLASYRLDLRTLAEWLAHHDNDLLQAQALDLQAFLADRV 64

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
              +  +S+ + L++MR  F++  R++  + +P   +  PK      +  ++  +    +
Sbjct: 65  DGGYKATSSARLLSAMRRFFQYLYREKLRSDDPSAVLSSPKLPQRLPKDLSEAQVDALLN 124

Query: 185 F----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPD 239
                     + +   E L  +GLR S+     +  +      ++   K      V L +
Sbjct: 125 APSIEQPLELRDKAMLEVLYATGLRVSELVGLTMSDVSLRQGVVRVLGKGNKERLVPLGE 184

Query: 240 GFMKLLAMTPIGKETFFIN----------NDKQKMNATQFSIWFKAKATKAGVN---KSA 286
             +  +         + +N          N  ++M    F    K  A  A ++    S 
Sbjct: 185 EAVYWIEYYLEHGRPWLLNGQTLDVLFPSNRARQMTRQTFWHRIKYYAVLASIDSEKLSP 244

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           H +R   AT   + GA    +    G   +   + YT  A
Sbjct: 245 HVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA 284


>gi|157829635|pdb|1A0P|A Chain A, Site-Specific Recombinase, Xerd
          Length = 290

 Score =  139 bits (349), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 43/270 (15%), Positives = 95/270 (35%), Gaps = 24/270 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGVESRKHTPSSAIQFLTS 139
            +LA N+  ++      ++             +    + + +      +  +S+ + L++
Sbjct: 17  KNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGYKATSSARLLSA 76

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195
           +R LF++  R+++   +P   +  PK      +  ++  +++             + +  
Sbjct: 77  VRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLIDQPLELRDKAM 136

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKET 254
            E L  +GLR S+     +  +      ++   K      V L +  +  L         
Sbjct: 137 LEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRP 196

Query: 255 FFIN----------NDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG 301
           + +N             Q+M    F    K  A  AG++    S H +R   AT   + G
Sbjct: 197 WLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHG 256

Query: 302 ATAHELMATYGWKTVDQAETYTKGA-DRIR 330
           A    +    G   +   + YT  A +R+R
Sbjct: 257 ADLRVVQMLLGHSDLSTTQIYTHVATERLR 286


>gi|284799628|ref|ZP_05984435.2| tyrosine recombinase XerD [Neisseria subflava NJ9703]
 gi|284797559|gb|EFC52906.1| tyrosine recombinase XerD [Neisseria subflava NJ9703]
          Length = 292

 Score =  139 bits (349), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 45/277 (16%), Positives = 100/277 (36%), Gaps = 19/277 (6%)

Query: 70  TLKWLISEYRKSAHWGS-LAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESR 126
           ++  LI +  +S      L+ N+  S+     ++  +   G  D+       +   V + 
Sbjct: 2   SMDDLIDKLLESLWLQDRLSYNTLQSYRRDLVKVAARLTEGGQDWLSADEFALSDAVYAE 61

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
               +S  + L++ + ++ W       A NP   ++ PK + +     T+  +    +  
Sbjct: 62  GEKNTSQARALSACKRMYGWLEETGQRADNPTRFLKAPKSERKLPTLITEAQIDALLAEP 121

Query: 187 S----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-VELPDGF 241
                 G + +   E +  +GLR +++ +  +  +  +  SI+T   G  +  V L    
Sbjct: 122 DVETLHGLRDKALLEVMYATGLRVTEAVKLTLSDIDLHRGSIRTIGKGDKLRLVPLGQEA 181

Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVR 290
              +                    F++  +  ++     +  K  A  AG+   S HG+R
Sbjct: 182 AYWVERYCNESRPLLLKNKICDEVFVSQKRSGISRQLAWMIVKEYAEAAGIASLSPHGLR 241

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
              AT   + G     +    G   ++  + YT  A+
Sbjct: 242 HAFATHLVNHGVDLRSVQMMLGHSDINTTQIYTHVAN 278


>gi|240949807|ref|ZP_04754136.1| site-specific tyrosine recombinase XerD [Actinobacillus minor
           NM305]
 gi|240295724|gb|EER46419.1| site-specific tyrosine recombinase XerD [Actinobacillus minor
           NM305]
          Length = 297

 Score =  139 bits (349), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 47/286 (16%), Positives = 95/286 (33%), Gaps = 26/286 (9%)

Query: 70  TLKWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGV 123
           +L  ++ ++  +      L+ N+  S+            D     +T  H          
Sbjct: 3   SLDPIVEQFLDTLWQEHGLSDNTVSSYRLDLSLFTEWL-DEPRAFLTVDHHTLQEFLGYR 61

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
             + +  SS+++ L+ +R  F++   + Y   +P   +  P++ +   +   +E +    
Sbjct: 62  FDQGYKASSSLRMLSCLRKFFRFLYLENYRKDDPTAMLISPRKPSRLPKTLNEEQVMDLL 121

Query: 184 S----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELP 238
                      + +   E L  +GLR ++      ++L      ++   K      V L 
Sbjct: 122 ECPNPLDPIELRDKAMLELLYATGLRVTELISLTTENLSLRQGVVRIIGKGDKERLVPLG 181

Query: 239 DGFMKLLAMTPIGKETFFINN----------DKQKMNATQFSIWFKAKATKAGVN---KS 285
           +     +           +NN            Q M    F    K  A  AG++    S
Sbjct: 182 EEASYWIQEFFQYGRGILLNNEPSNVVFPSKRGQMMTRQTFWHRIKHYAVLAGIDSEKLS 241

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            H +R   AT   + GA    +    G   +   + YT  A + RL
Sbjct: 242 PHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVA-KARL 286


>gi|227503694|ref|ZP_03933743.1| site-specific tyrosine recombinase XerD [Corynebacterium accolens
           ATCC 49725]
 gi|227075730|gb|EEI13693.1| site-specific tyrosine recombinase XerD [Corynebacterium accolens
           ATCC 49725]
          Length = 296

 Score =  139 bits (349), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 48/261 (18%), Positives = 91/261 (34%), Gaps = 22/261 (8%)

Query: 90  NSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS--SAIQFLTSMRVLFKWA 147
           N R     Y D +   +   D R++T   + + ++  + T +  SA + L   R L K+A
Sbjct: 28  NYRRDIRRYVDWL-AVNEVQDLRQVTRPMVEAYLKDLRETMAVSSANRALIVARGLHKFA 86

Query: 148 VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSG 203
           V +  +  +    V  P          + +++ Q        +    + R   E L  +G
Sbjct: 87  VAEGEIDSDVAAEVSPPSTGQHLPETLSVDEVTQLIEATPTETPVDLRDRALLEVLYGTG 146

Query: 204 LRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKLLAM---------TPIGK 252
            R S+     V  +   +++  +   K      V L     + +                
Sbjct: 147 ARISEVISLNVDDVATGDDVLVLH-GKGDKERLVPLGSHARQAIDAYLVRARPVLGKGKT 205

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMAT 310
              F+N     ++        K  A ++ ++KS   H +R   AT   + GA    +   
Sbjct: 206 AALFLNTRGGALSRQSAWSIIKTAAQRSQLDKSISPHTLRHSFATHLLEGGADVRTVQEL 265

Query: 311 YGWKTVDQAETYTK-GADRIR 330
            G  +V   + YT   AD +R
Sbjct: 266 LGHSSVTTTQIYTHVTADSLR 286


>gi|327402648|ref|YP_004343486.1| tyrosine recombinase XerD subunit [Fluviicola taffensis DSM 16823]
 gi|327318156|gb|AEA42648.1| tyrosine recombinase XerD subunit [Fluviicola taffensis DSM 16823]
          Length = 301

 Score =  139 bits (349), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 51/285 (17%), Positives = 95/285 (33%), Gaps = 28/285 (9%)

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIR---SG 122
             T+K  +  Y K     SLA NS  +++    ++             I T H++   + 
Sbjct: 5   ERTIKQFVH-YLKIER--SLAENSIFAYQQDIAKLRDFCESYTLSPEHIQTGHLKQFVAE 61

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           +     +  S  + ++  +  F + V +E    +P  ++E PK   +     T E++   
Sbjct: 62  LYDMGLSARSQARIISGWKQFFDFLVLEEIRKDDPSEALELPKIGRKLPEVLTIEEIDAL 121

Query: 183 KSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQH--LQNNIFSIKTQKTGTIITVE 236
                    EG + +   E L   G+R S+      +    +     +   K      V 
Sbjct: 122 IDAIDLSSNEGQRNKAILETLYSCGIRVSELVSLRFEDCFFEEGFIRVI-GKGNKERLVP 180

Query: 237 LPDGF-----------MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284
           +                  L +    ++  F+N    ++         K  A  AG+ K 
Sbjct: 181 VSPSVIEEVGEYVEHDRSNLLIKKGHEQFVFLNRRGAQLTRVMIFTIIKRLADLAGIKKN 240

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
            S H  R   AT   + GA    +    G +++   E YT    R
Sbjct: 241 ISPHTFRHSFATHLIEGGANLRAIQDMLGHESITTTEIYTHLDQR 285


>gi|146312952|ref|YP_001178026.1| site-specific tyrosine recombinase XerD [Enterobacter sp. 638]
 gi|145319828|gb|ABP61975.1| tyrosine recombinase XerD subunit [Enterobacter sp. 638]
          Length = 298

 Score =  139 bits (349), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 47/279 (16%), Positives = 94/279 (33%), Gaps = 26/279 (9%)

Query: 73  WLISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVES 125
            LI ++   A W   +LA N+  ++      +              +      + +    
Sbjct: 6   ALIEQFL-DALWLEKNLAENTLSAYRRDLTMLAEWLAHRGLSLEQAQRDDLQTLLAERMD 64

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
             +  +S+ + L++MR LF+   R++  A +P   +  PK      +  ++  + +    
Sbjct: 65  GGYKATSSARLLSAMRRLFQHLYREKLRADDPSALLASPKLPQRLPKDLSEAQVDRLLQS 124

Query: 186 W----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240
                    + +   E L  +GLR S+     +  +      ++   K      V L + 
Sbjct: 125 PTVDVPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEE 184

Query: 241 FMKLLAMTPIGKETFFIN----------NDKQKMNATQFSIWFKAKATKAGVN---KSAH 287
            +  +         + +N             Q+M    F    K  AT AG++    S H
Sbjct: 185 AVYWVETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYATLAGIDSEKLSPH 244

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            +R   AT   + GA    +    G   +   + YT  A
Sbjct: 245 VLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA 283


>gi|291286773|ref|YP_003503589.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809]
 gi|290883933|gb|ADD67633.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809]
          Length = 312

 Score =  139 bits (349), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 35/264 (13%), Positives = 83/264 (31%), Gaps = 24/264 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRKHTPSSAIQFLT 138
              + ++  ++      +     D     I        +   + +  +    S+  + + 
Sbjct: 27  KGASDHTIKNYSRDLADLCMYLEDSAIDDIQDADFFTLRGFVAMLFDKGLAKSTIERKIA 86

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKSFWSEGSQPRL 194
            ++  F +  ++ +   NP   ++ PK++ +  + +  + +             G +  L
Sbjct: 87  CLKSFFAFMQKKNHTDDNPARMLKFPKKEQKAFKVFNIDSIIALLDAPDKDKPAGMRDAL 146

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVEL-----------PDGFM 242
             E +  +G+R S+     +  +      I    K      V +            D  M
Sbjct: 147 IQELMYGTGVRVSELVGLNLSDIDFGGMRILVRGKGKKERIVPIADMHIEMINDYLDVKM 206

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
            +        E  FIN    ++         +     AG+    S H  R   AT   + 
Sbjct: 207 DICNGYLPDNEAIFINKFGSRLTDRSVRRIVEKYLKIAGLPMDFSPHSFRHSYATHLLEG 266

Query: 301 GATAHELMATYGWKTVDQAETYTK 324
           GA    + +  G +++   + YT 
Sbjct: 267 GADLRTIQSLLGHESLTTTQKYTH 290


>gi|255036556|ref|YP_003087177.1| tyrosine recombinase XerD [Dyadobacter fermentans DSM 18053]
 gi|254949312|gb|ACT94012.1| tyrosine recombinase XerD [Dyadobacter fermentans DSM 18053]
          Length = 298

 Score =  139 bits (349), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 49/266 (18%), Positives = 97/266 (36%), Gaps = 27/266 (10%)

Query: 85  GSLAVNSRISFESYFDQIIRKSG----DFDYRKITTKH---IRSGVESRKHTPSSAIQFL 137
            SL+ NS  ++    +++         D    ++  +H       +        S  + L
Sbjct: 17  RSLSGNSVEAYVRDVEKLEEYLELSKADLAPARVQEEHLSAFLKYIAELGLAAHSQARML 76

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ----QFKSFWSEGSQPR 193
           + ++  FK+ + +  +  +P   +E P+   +     + E+++           EG++ R
Sbjct: 77  SGIKAFFKYLLLENEITEDPTELLESPRLPRKLPDVLSYEEIETMLSAIDHSTPEGTRNR 136

Query: 194 LAFEFLLYSGLRCSDS--CRAGVQHLQNNIFSIKTQKTGTIITVEL-----------PDG 240
              E L  SGLR S+    +    H       I   K   +  V +            D 
Sbjct: 137 AIMEVLYSSGLRVSELTDLQLTNCHFDIGFLRI-LGKGDKMRLVPIGREAIKYTQIYLDH 195

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISA 298
               +A     ++  F+N    +++     +  K  A KAG++K  S H  R   AT   
Sbjct: 196 IRNDIAPQKGSEDIVFLNRRGGQLSRVMIFLMIKDTAEKAGIHKNVSPHTFRHSFATHLI 255

Query: 299 DAGATAHELMATYGWKTVDQAETYTK 324
           + GA+   +    G +++   E YT 
Sbjct: 256 EGGASLRAVQEMLGHESITTTEIYTH 281


>gi|212710035|ref|ZP_03318163.1| hypothetical protein PROVALCAL_01088 [Providencia alcalifaciens DSM
           30120]
 gi|212687242|gb|EEB46770.1| hypothetical protein PROVALCAL_01088 [Providencia alcalifaciens DSM
           30120]
          Length = 300

 Score =  139 bits (349), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 47/285 (16%), Positives = 98/285 (34%), Gaps = 26/285 (9%)

Query: 74  LISEYRKSAHW--GSLAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVESR 126
           LI ++  +  W    LA N+  S+ +    +      ++      + I  +   +     
Sbjct: 9   LIEQFLDTI-WLEQDLAENTLASYRNDLQSLDRWLDKQQLHLETVQSIDLQSFLAERIDG 67

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ----QF 182
            +  +S+ + L+S+R LF++  R++  + +P   +  PK      +  +++ ++      
Sbjct: 68  GYKAASSARLLSSIRRLFQYFYREKIRSDDPSAVIAAPKIPQRLPKDLSEKQVEDLLNAP 127

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG- 240
            +  S   + +   E L   GLR S+        +      ++   K      + L +  
Sbjct: 128 ATEDSLELRDKAMLEVLYACGLRVSELTGLTFSDISLRQGVVRVVGKGDKERLIPLGEEA 187

Query: 241 ---FMKLLAMTPIG------KETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHG 288
                K +A            +  F +    KM    F    K  A  A ++    S H 
Sbjct: 188 IYWLEKYIAEGRPDLLNGKTSDVLFPSKRGTKMTRQTFWHRIKYYAVLANIDGEALSPHV 247

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           +R   AT   + GA    +    G   +   + YT  A      +
Sbjct: 248 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRAL 292


>gi|152979420|ref|YP_001345049.1| site-specific tyrosine recombinase XerD [Actinobacillus
           succinogenes 130Z]
 gi|150841143|gb|ABR75114.1| tyrosine recombinase XerD [Actinobacillus succinogenes 130Z]
          Length = 297

 Score =  139 bits (349), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 45/270 (16%), Positives = 96/270 (35%), Gaps = 24/270 (8%)

Query: 85  GSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTS 139
             L+ N+  S+      +     +       +    ++S +  R    +  +S  + L++
Sbjct: 18  KGLSENTIQSYRLDLAALCDWLNAHSLSLISLDAVDLQSFLGQRVEAGYKATSTARLLSA 77

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLA 195
           MR LF++  R+ Y   +P  ++  PK  T   +  T++ +    S          + +  
Sbjct: 78  MRKLFQYLYRENYRPDDPSATLSSPKLPTRLPKYLTEQQVNDLLSVPSTDVPLELRDKAM 137

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFM----------KL 244
            E L  +GLR ++     + ++  +   ++   K      V + +             + 
Sbjct: 138 LELLYATGLRVTELVSLSMDNISLSQGVVRVIGKGNKERIVPMGEEAAYWVGEFIRYGRA 197

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATISADAG 301
           + +     +  F +    +M    F    K  A  A ++    S H +R   AT   + G
Sbjct: 198 MLLNGQSSDVVFPSRRALQMTRQTFWHRIKYYAVLADIDGDSLSPHVLRHAFATHLVNHG 257

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRL 331
           A    +    G   +   + YT  A + RL
Sbjct: 258 ADLRVVQMLLGHSDLSTTQIYTHVA-KERL 286


>gi|295133714|ref|YP_003584390.1| tyrosine recombinase [Zunongwangia profunda SM-A87]
 gi|294981729|gb|ADF52194.1| tyrosine recombinase [Zunongwangia profunda SM-A87]
          Length = 299

 Score =  139 bits (349), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 54/277 (19%), Positives = 102/277 (36%), Gaps = 25/277 (9%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIR----KSGDFDYRKITTKHIRSGVE- 124
            ++++ +Y         L+VNS  S+E    ++I     KS       I  + ++  +  
Sbjct: 3   WEYILKDYLTYLKLERGLSVNSISSYELDLIKLINFLKVKSISASPLTIDQETLQLFLYE 62

Query: 125 -SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
            +++    S  + ++ ++  F + + ++Y   NP   +E PK   +     + E++ +  
Sbjct: 63  IAKELNSRSRARIISGLKSFFNYLIFEDYRKDNPTDLIEAPKIGRKLPETISVEEIDELI 122

Query: 184 SFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELP 238
           +       EG + R   E L   GLR S+     +  L      IK T K      V + 
Sbjct: 123 AAIDLTKTEGERNRAIIETLYGCGLRVSELTNLRISDLYFEEGFIKVTGKGDKQRFVPIS 182

Query: 239 D-----------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--S 285
           D                  + P   +T F+N    ++         +  A KA + K  S
Sbjct: 183 DYNIKYITIYKDQVRAHQEIKPEASDTLFLNRRGAQLTRAMIFTIIRQLAEKANIRKKIS 242

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
            H  R   AT   + GA    +    G +++   E Y
Sbjct: 243 PHTFRHSFATHLLENGADLRAIQQMLGHESITTTEIY 279


>gi|288555956|ref|YP_003427891.1| integrase/recombinase [Bacillus pseudofirmus OF4]
 gi|288547116|gb|ADC50999.1| integrase/recombinase [Bacillus pseudofirmus OF4]
          Length = 295

 Score =  139 bits (349), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 42/263 (15%), Positives = 95/263 (36%), Gaps = 23/263 (8%)

Query: 85  GSLAVNSRISFESYF---DQIIRKSGDFDYRKITTKHIRSG----VESRKHTPSSAIQFL 137
             LA N+  S+        + ++   D    K  T+H+       ++ +    ++  + +
Sbjct: 16  RGLAENTIQSYRRDLLNYAKFLQNVIDIQTFKDVTRHMIVDYLFFLKEQGRAEATIARTI 75

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS---QPRL 194
            S+R   ++ +R++    +P + ++ PK      +  + E+++   +   +     + R 
Sbjct: 76  ASIRAFHQFLLREKLSEQDPSVHLDIPKASKRLPKVLSLEEVEALLTISGQDHLSIRNRA 135

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM------ 247
             E L  +G+R S+     +     ++  ++   K      + L     K L +      
Sbjct: 136 MMETLYATGMRVSELINLKLTDTHLSMGFVRCIGKGNKERIIPLGQQATKALQLYLEQAR 195

Query: 248 ----TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301
                    E  F+N+  + +    F    K  A  A + K  + H +R   AT   + G
Sbjct: 196 STMLKKNRHEYVFVNHYGRPLTRQGFWKIVKKLAEAAKIEKELTPHTLRHSFATHLLENG 255

Query: 302 ATAHELMATYGWKTVDQAETYTK 324
           A    +    G   +   + YT 
Sbjct: 256 ADLRAVQEMLGHVDISTTQIYTH 278


>gi|254229667|ref|ZP_04923077.1| tyrosine recombinase XerD [Vibrio sp. Ex25]
 gi|262395210|ref|YP_003287064.1| site-specific recombinase XerD [Vibrio sp. Ex25]
 gi|151937788|gb|EDN56636.1| tyrosine recombinase XerD [Vibrio sp. Ex25]
 gi|262338804|gb|ACY52599.1| site-specific recombinase XerD [Vibrio sp. Ex25]
          Length = 305

 Score =  139 bits (349), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 47/278 (16%), Positives = 102/278 (36%), Gaps = 26/278 (9%)

Query: 74  LISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVESR 126
           L+ ++   A W    L+ N+  S+ +   +++       YR         +  +S +   
Sbjct: 14  LVEQFL-DAMWMERGLSENTLASYRNDLMKLLTWMEKHRYRLDFISLSGLQEYQSYLVDL 72

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185
            +  +S  + L+++R LF++  R++  A +P   +  PK      +  ++E +       
Sbjct: 73  DYKQTSRARMLSAIRRLFQYLHREKVRADDPSALLVSPKLPQRLPKDISEEQVDALLEAP 132

Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGF 241
                   + +   E L  +GLR ++     ++++      ++ T K G    V + +  
Sbjct: 133 DPNDPVELRDKAMLELLYATGLRVTELVSLTMENISLRQGVVRVTGKGGKERLVPMGENA 192

Query: 242 MKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288
           +  +                 +  F +   ++M    F    K  A  AG++    S H 
Sbjct: 193 VDWIETFIQQGRPALLGDTSSDIVFPSKRARQMTRQTFWHRIKYYALIAGIDTEQLSPHV 252

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           +R   AT   + GA    +    G   +   + YT  A
Sbjct: 253 LRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVA 290


>gi|152976499|ref|YP_001376016.1| site-specific tyrosine recombinase XerD [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152025251|gb|ABS23021.1| tyrosine recombinase XerD [Bacillus cytotoxicus NVH 391-98]
          Length = 296

 Score =  139 bits (349), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 39/271 (14%), Positives = 97/271 (35%), Gaps = 25/271 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFD-------YRKITTKHIRSGVESRKHTPSSAIQFL 137
             LA N+ +S+E      ++     +         ++   +    +     +  +  + +
Sbjct: 16  KGLAKNTVVSYERDLKSYVKYLQKVEQMKTFHEVTRMQIVNFLQHLRENGKSSKTLARHI 75

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPR 193
            S+R   ++ +R+  V  +P + +E P+ + +  +  +  +++            G + +
Sbjct: 76  ASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLSVSEVEALLQTPKTTSAYGIRDK 135

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAMTPIGK 252
              E L  +GLR S+     ++ +   +  ++   K      + L     + +       
Sbjct: 136 AMLELLYATGLRVSELIALNLEDVHLTMGFVRCVGKGNKERIIPLGSLATEAIQRYIEKG 195

Query: 253 ----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
                     +  F+N+   +++   F    K  A +A + K  + H +R   AT   + 
Sbjct: 196 RKELMGKKAVDALFLNHHGNRLSRQGFWKILKRLAKEANIEKELTPHTLRHSFATHLLEN 255

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRL 331
           GA    +    G   +   + YT    + RL
Sbjct: 256 GADLRAVQEMLGHADISTTQIYTH-VSKTRL 285


>gi|283835346|ref|ZP_06355087.1| tyrosine recombinase XerD [Citrobacter youngae ATCC 29220]
 gi|291068511|gb|EFE06620.1| tyrosine recombinase XerD [Citrobacter youngae ATCC 29220]
          Length = 298

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 42/265 (15%), Positives = 89/265 (33%), Gaps = 23/265 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGVESRKHTPSSAIQFLTS 139
            +LA N+  ++      ++             +    + + +      +  +S+ + L++
Sbjct: 19  RNLAENTLSAYRRDLSMLVEWLHHRGVSLATAQSDDLQALLAERMDGGYKATSSARLLSA 78

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195
            R  F+   R++Y   +P  S+  PK      +  ++  +++             + +  
Sbjct: 79  TRRFFQHLYREKYREDDPSASLASPKLPQRLPKDLSEAQVERLLQAPLIEQPLELRDKAM 138

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKET 254
            E L  +GLR S+     +  +      ++   K      V L +  +  L         
Sbjct: 139 LEVLYATGLRVSELVGLTMSDVSLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRP 198

Query: 255 FFIN----------NDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG 301
           + +N             Q+M    F    K  A  AG++    S H +R   AT   + G
Sbjct: 199 WLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHG 258

Query: 302 ATAHELMATYGWKTVDQAETYTKGA 326
           A    +    G   +   + YT  A
Sbjct: 259 ADLRVVQMLLGHSDLSTTQIYTHVA 283


>gi|154494032|ref|ZP_02033352.1| hypothetical protein PARMER_03377 [Parabacteroides merdae ATCC
           43184]
 gi|154086292|gb|EDN85337.1| hypothetical protein PARMER_03377 [Parabacteroides merdae ATCC
           43184]
          Length = 301

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 47/275 (17%), Positives = 96/275 (34%), Gaps = 27/275 (9%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQII-------RKSGDFDYRKITTKHIRSGVESR 126
           I  Y+       +L+ NS  ++ +  D++        +K  D  Y  +      + +   
Sbjct: 8   IERYKTYLRLEKALSANSIDAYLTDLDKLTNFVESEGKKYADVTYDDLQQ--FVARLHDI 65

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185
              P S  + ++ ++  +++    +Y+  +P   +E PK   +     T  ++       
Sbjct: 66  GIHPRSQARIISGIKSFYRFLFLDDYITTDPTELLESPKIGLKLPEVLTVNEINSILDTI 125

Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-VELPDGF 241
                EG + R   E L   GLR S+        +  +   IK +  G+    V + +  
Sbjct: 126 DLTLPEGQRNRAMLEVLYSCGLRVSELVSLRFTDVYFDEGFIKVEGKGSKQRLVPISETA 185

Query: 242 ----------MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289
                        +A+    ++  F++     ++        K +   AG+ K  S H  
Sbjct: 186 IKEIKNYLYDRNHVAVKKGFEDILFLSRRGTALSRIMVFHIIKQQTEMAGIKKNVSPHTF 245

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           R   AT   + GA    +    G + +   E YT 
Sbjct: 246 RHSFATHLLEGGANLLAIQEMLGHEKITTTEIYTH 280


>gi|206576348|ref|YP_002236649.1| tyrosine recombinase XerD [Klebsiella pneumoniae 342]
 gi|290511308|ref|ZP_06550677.1| tyrosine recombinase XerD [Klebsiella sp. 1_1_55]
 gi|206565406|gb|ACI07182.1| tyrosine recombinase XerD [Klebsiella pneumoniae 342]
 gi|289776301|gb|EFD84300.1| tyrosine recombinase XerD [Klebsiella sp. 1_1_55]
          Length = 298

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 42/270 (15%), Positives = 96/270 (35%), Gaps = 24/270 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESR---KHTPSSAIQFLTS 139
            +LA N+  ++      ++            + +  +++ +  R    +  +S  + L++
Sbjct: 19  RNLAENTLSAYRRDLTMLVEWLHHRGLSLASVGSDDLQALLAERQTGGYKATSTARLLSA 78

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195
           +R  F+   R++    +P   +  PK      +  ++  +++             + +  
Sbjct: 79  VRRFFQHLYREKIRPDDPSALLASPKLPQRLPKDLSEAQVERLLQAPLVEQPLELRDKAM 138

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLA-------- 246
            E L  +GLR S+     +  +      ++   K      V L +  +  +         
Sbjct: 139 LEVLYATGLRVSELVGLTMSDISLRQGVLRVIGKGNKERLVPLGEEAVMWVENYLEYGRP 198

Query: 247 --MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG 301
             +  +  +  F +   Q+M    F    K  A  AG++    S H +R   AT   + G
Sbjct: 199 WLLNGVASDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSAKLSPHVLRHAFATHLLNHG 258

Query: 302 ATAHELMATYGWKTVDQAETYTKGA-DRIR 330
           A    +    G   +   + YT  A +R+R
Sbjct: 259 ADLRVVQMLLGHSDLSTTQIYTHVATERLR 288


>gi|167753897|ref|ZP_02426024.1| hypothetical protein ALIPUT_02182 [Alistipes putredinis DSM 17216]
 gi|167658522|gb|EDS02652.1| hypothetical protein ALIPUT_02182 [Alistipes putredinis DSM 17216]
          Length = 298

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 45/260 (17%), Positives = 92/260 (35%), Gaps = 20/260 (7%)

Query: 85  GSLAVNSRISFESYFD---QIIRKSGDFDYRKITT---KHIRSGVESRKHTPSSAIQFLT 138
             L+ N+  S+          I +  D   RK+     +   + +  +    +S  + L+
Sbjct: 23  KRLSENTVESYMRDLRQFAHFILRFYDVPPRKVEAPMIERYLALLYDQGREKTSQARALS 82

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRL 194
            +R  + + +  + +   P   ++ PK         T E++ +  +       +G +   
Sbjct: 83  GIRSFYNYLMLTDVIDSTPTQFIDTPKFGRHLPDILTVEEIDRIVAAVDTSTVKGRRDSA 142

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLL-------A 246
             E L   GLR S+     +  L      I+ T K      V +     + +       A
Sbjct: 143 MLEVLYSCGLRVSELTSLRLGDLFFGEGYIRVTGKGDKQRLVPVSGAAREKIQRYLDDRA 202

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATA 304
                 +  F+NN   ++         +    +AG++K  S H  R   AT   + GA+ 
Sbjct: 203 TKTSASDVVFLNNRGTQLTRVMVFTILREAVHRAGIDKHISPHTFRHSFATHLLEGGASI 262

Query: 305 HELMATYGWKTVDQAETYTK 324
            ++    G +++   E YT 
Sbjct: 263 RQVQEMLGHESILTTEIYTH 282


>gi|120436224|ref|YP_861910.1| tyrosine recombinase [Gramella forsetii KT0803]
 gi|117578374|emb|CAL66843.1| tyrosine recombinase [Gramella forsetii KT0803]
          Length = 298

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 51/280 (18%), Positives = 94/280 (33%), Gaps = 28/280 (10%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE------SRKHTP 130
           +Y        L+ NS  ++     ++I      + +    K     ++      S+    
Sbjct: 11  QYYLKLE-RGLSENSIANYSLDVIKLINYLDVNEIQISPDKISEKWIQEFIYSVSKDLNA 69

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS--- 187
            S  + ++ +R  F + + ++Y   NP   +E PK   +     +  ++ +  +      
Sbjct: 70  RSQSRLISGLRSFFSYLLFEDYRKDNPLDLMESPKIGRKLPDTISIAEVDKIIAAIDLSK 129

Query: 188 -EGSQPRLAFEFLLYSGLRCSDSCRAGVQH--LQNNIFSIKTQKTGTIITVELP------ 238
            EG + R   E L   GLR S+     +     +     + T K      V +       
Sbjct: 130 NEGERNRAIIETLYGCGLRVSELTDLKISDLFFKEGFIKV-TGKGDKQRFVPISEYTVKF 188

Query: 239 -----DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRK 291
                D       + P   +T F+N    K+         K     AG++K  S H  R 
Sbjct: 189 INLYKDQVRNHQDIKPEATDTLFLNRRGNKLTRAMIFTIVKKLTEVAGISKKVSPHTFRH 248

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
             AT   + GA    +    G +++   E Y    DR  L
Sbjct: 249 SFATHLLENGADLRAIQQMLGHESITTTEVYVH-VDRSHL 287


>gi|163803381|ref|ZP_02197257.1| tyrosine recombinase [Vibrio sp. AND4]
 gi|159172843|gb|EDP57685.1| tyrosine recombinase [Vibrio sp. AND4]
          Length = 305

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 104/278 (37%), Gaps = 26/278 (9%)

Query: 74  LISEYRKSAHW--GSLAVNSRISFESYFDQII----RKSGDFDYRKIT-TKHIRSGVESR 126
           L+ ++   A W    L+ N+  S+ +   +++    +      +  ++  +  +S +   
Sbjct: 14  LVEQFL-DAMWMERGLSENTLASYRNDLMKLLVWMEQHCYHLSFISLSGLQEYQSYLVDL 72

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185
            +  +S  + L+++R LF++  R++  + +P   +  PK      +  ++E +       
Sbjct: 73  DYKQTSRARMLSAIRRLFQYIHREKVRSDDPSALLVSPKLPQRLPKDISEEQVDALLDAP 132

Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGF 241
                   + +   E L  +GLR ++     ++++      ++ T K G    V + +  
Sbjct: 133 DPNDPIELRDKAMLELLYATGLRVTELVSLTMENVSLRQGVVRVTGKGGKERLVPMGENA 192

Query: 242 MKLLAMTPIGK----------ETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288
           +  +                 +  F +   ++M    F    K  A  AG++    S H 
Sbjct: 193 VDWIETFIKQGRPALLGEKTSDVVFPSKRARQMTRQTFWHRIKHYAVIAGIDTGHLSPHV 252

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           +R   AT   + GA    +    G   +   + YT  A
Sbjct: 253 LRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVA 290


>gi|323173892|gb|EFZ59521.1| tyrosine recombinase XerD [Escherichia coli LT-68]
          Length = 298

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 43/270 (15%), Positives = 95/270 (35%), Gaps = 24/270 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGVESRKHTPSSAIQFLTS 139
            +LA N+  ++      ++             +    + + +      +  +S+ + L++
Sbjct: 19  KNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGYKATSSARLLSA 78

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195
           +R LF++  R+++   +P   +  PK      +  ++  +++             + +  
Sbjct: 79  VRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLIDQPLELRDKAM 138

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKET 254
            E L  +GLR S+     +  +      ++   K      V L +  +  L         
Sbjct: 139 LEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRP 198

Query: 255 FFIN----------NDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG 301
           + +N             Q+M    F    K  A  AG++    S H +R   AT   + G
Sbjct: 199 WLLNCVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHG 258

Query: 302 ATAHELMATYGWKTVDQAETYTKGA-DRIR 330
           A    +    G   +   + YT  A +R+R
Sbjct: 259 ADLRVVQMLLGHSDLSTTQIYTHVATERLR 288


>gi|300870084|ref|YP_003784955.1| tyrosine recombinase XerD [Brachyspira pilosicoli 95/1000]
 gi|300687783|gb|ADK30454.1| tyrosine recombinase, XerD [Brachyspira pilosicoli 95/1000]
          Length = 288

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 56/262 (21%), Positives = 97/262 (37%), Gaps = 22/262 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKH---TPSSAIQFLTS 139
             L+ N+  S+       +   G       K T K I   +  RK       +  +   S
Sbjct: 3   KGLSQNTLESYRRDIVIYLDFLGRNKKTILKATRKDIEKFLSERKEQGSKSRTVARNKVS 62

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLA 195
           +  L+K+ V + Y++ NP  ++E  + K       T E++    S       +G + +  
Sbjct: 63  IVNLYKFLVMENYISKNPTDNLEVIRLKRVLPESLTTEEVDDLLSVHNEKTDKGLRDKAI 122

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAMTP----- 249
           FE +  SGLR S+ C   ++ +  +   +K   K      V + D  + +L         
Sbjct: 123 FELMYSSGLRVSEICSLKIEDIFFDEKYLKICGKGKRERIVPINDKALDILKRYIQTSRV 182

Query: 250 ---IGKET--FFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGA 302
               GK+T   F+N    K++        K    K+G+ K+   H +R   AT     GA
Sbjct: 183 VMVKGKKTSELFLNFRGDKISRVGIWKIVKEAMKKSGIEKNVYPHTLRHSFATHLIQHGA 242

Query: 303 TAHELMATYGWKTVDQAETYTK 324
               +    G   +   E YT 
Sbjct: 243 DLRSVQRMLGHSDITTTEIYTH 264


>gi|283788448|ref|YP_003368313.1| tyrosine recombinase [Citrobacter rodentium ICC168]
 gi|282951902|emb|CBG91620.1| tyrosine recombinase [Citrobacter rodentium ICC168]
          Length = 298

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 41/265 (15%), Positives = 89/265 (33%), Gaps = 23/265 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGVESRKHTPSSAIQFLTS 139
            +LA N+  ++      ++             +    + + +      +  +S  + L++
Sbjct: 19  KNLAENTLSAYRRDLTMLVEWLAHRKASLETAQSEDLQALLAERMDGGYKATSTARLLSA 78

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195
           +R LF+   R++    +P  ++  PK      +  ++  +++             + +  
Sbjct: 79  VRRLFQHLYREKIRPDDPSAALASPKLPQRLPKDLSEAQVERLLQAPVVDQPLELRDKAM 138

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKET 254
            E L  +GLR S+     +  +      ++   K      V L +  +  L         
Sbjct: 139 LEILYATGLRVSELVGLTMSDVSLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRP 198

Query: 255 FFIN----------NDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG 301
           + +N             Q+M    F    K  A  AG++    S H +R   AT   + G
Sbjct: 199 WLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHG 258

Query: 302 ATAHELMATYGWKTVDQAETYTKGA 326
           A    +    G   +   + YT  A
Sbjct: 259 ADLRVVQMLLGHSDLSTTQIYTHVA 283


>gi|238786426|ref|ZP_04630347.1| Phage integrase [Yersinia bercovieri ATCC 43970]
 gi|238712669|gb|EEQ04760.1| Phage integrase [Yersinia bercovieri ATCC 43970]
          Length = 270

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 57/271 (21%), Positives = 97/271 (35%), Gaps = 25/271 (9%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
           +PP     R R GK  Y FR   GR IRL     S        A        E +   +K
Sbjct: 13  MPP-----RVRKGKSAYEFRAIDGRTIRLCSFECSQ--ADVWIAF-------EKLMISQK 58

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
           + +T   LI+E+  S  +  LA +++  +  Y  +II   G      I  +HIR  ++ R
Sbjct: 59  EDSTFAGLINEFLLSGDFCELAFDTQKDYRKYSSKIIAVFGKMSPDNIKPEHIRKYMDKR 118

Query: 127 KHTPS-SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
                  A +  + M  +F+W      V +NPC  V++ K K    R  T ++       
Sbjct: 119 GAKSRVQANREKSFMSRVFRWGYEHGKVKLNPCQGVKQFKEKAR-TRYITDDEYIALYDV 177

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
                  ++A E       R +D     +  +  +   I+  KTG            +++
Sbjct: 178 APA--VVKVAMELAYLCCTRQADILDMKIGQILESGILIQQSKTGVAQIKAWTPRLHEVI 235

Query: 246 AMTPI-----GKETFFI--NNDKQKMNATQF 269
            +        G  + ++       +     F
Sbjct: 236 RLASTLPLNSGVMSIYLLHQQSGSRFTRDSF 266


>gi|319651425|ref|ZP_08005554.1| tyrosine recombinase [Bacillus sp. 2_A_57_CT2]
 gi|317396956|gb|EFV77665.1| tyrosine recombinase [Bacillus sp. 2_A_57_CT2]
          Length = 297

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 41/265 (15%), Positives = 97/265 (36%), Gaps = 25/265 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKS-------GDFDYRKITTKHIRSGVESRKHTPSSAIQFL 137
             LA N+ +S+E      ++              ++         ++ +  +  +  + +
Sbjct: 16  KGLAKNTIVSYERDLKSYLKYLKSEEKISSLESVQRTQIVQFLGFLKKQGKSSKTLARHI 75

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPR 193
            S+R   ++ +R++ V  +P + +E P+ +    +    ++++    F       G + +
Sbjct: 76  ASIRAFHQFLLREKAVGHDPSVHIETPQMERSLPKVLNMQEVETLLDFPEIKDHFGLRDK 135

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLL------- 245
              E L  +G+R S+     +  +   +  ++   K      V +     + L       
Sbjct: 136 AMLELLYATGIRVSELIGLNIGDVHLTMGFVRCIGKGNKERIVPIGKTASEALEKYLNEG 195

Query: 246 ----AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
               A      E  F+N+  ++++   F    K  A +AG+ K  + H +R   AT   +
Sbjct: 196 RGKFAPKKHKDEALFLNHHGKRLSRQGFWKILKRLAQEAGIEKELTPHTLRHSFATHLLE 255

Query: 300 AGATAHELMATYGWKTVDQAETYTK 324
            GA    +    G   +   + YT 
Sbjct: 256 NGADLRAVQEMLGHADISTTQIYTH 280


>gi|325971096|ref|YP_004247287.1| tyrosine recombinase xerC [Spirochaeta sp. Buddy]
 gi|324026334|gb|ADY13093.1| Tyrosine recombinase xerC [Spirochaeta sp. Buddy]
          Length = 300

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 50/276 (18%), Positives = 98/276 (35%), Gaps = 20/276 (7%)

Query: 74  LISEYRKSAHWGS-LAVNSRISFESYFDQIIRKSGDFDY--RKITTKHIRSGVESRKHTP 130
           LI +Y         L+  ++  +       +    D++     +   +I   V++R  + 
Sbjct: 10  LIEDYTDYLAMQRRLSEATQSVYAHELALFLAAGSDYETITASLIEAYIVIQVQTRHLSE 69

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS--- 187
            S  + L+++R  F +    +    NP L ++R ++K    +  +   +           
Sbjct: 70  RSVAKLLSALRSFFSFLQMSKIREDNPVLLIQRGRQKQSLPQVASVAQVDALLESIDTSD 129

Query: 188 -EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP-------D 239
             G + R  FE +   GLR S++C   V   Q     +   K   I  + +        D
Sbjct: 130 LLGFRDRTLFELIYSCGLRISEACTLQVSDYQKTSIRV-VGKRHKIRIIPVGEIARMWVD 188

Query: 240 GFMKLLAMTPIG----KETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSAT 295
            ++K +    IG     +  F+     ++        F A    AG++   H +R   AT
Sbjct: 189 AYLKDIRPKLIGMRLSTKALFVGRRGHQLTRQAMYKRFIAYCDVAGLDAKVHTLRHSFAT 248

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
              + GA    +    G   +   + YT   D  +L
Sbjct: 249 HLLEGGADLRSVQELLGHSDIKTTQIYTH-VDTKQL 283


>gi|187250579|ref|YP_001875061.1| integrase family protein [Elusimicrobium minutum Pei191]
 gi|186970739|gb|ACC97724.1| Integrase family protein [Elusimicrobium minutum Pei191]
          Length = 295

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 44/279 (15%), Positives = 107/279 (38%), Gaps = 20/279 (7%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD------YRKITTKHIRSGVES 125
             LI+++  S    + + ++  ++ +    +     + +      +     +        
Sbjct: 5   ASLINKFILSLQSKNFSRHTLRAYTADLKDVENYMAEHNLTAAEFFTHTKLRGYLGVTSE 64

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
             +  ++ ++ ++ MR   K+ ++ E +  NP   +  PKR+    +  T+E+  +    
Sbjct: 65  GDYKKNTVLRKISVMRSFAKYLLKHEVIKNNPFKLLPLPKREKLLPKFLTQEETDRLIDT 124

Query: 186 W----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPD- 239
                   ++ +  FE +  SGLR S+     ++ +  N+  ++    G+    V + D 
Sbjct: 125 AANQGKLPARDKALFELIYSSGLRRSEVTGLSIKDIDLNLGVVRVMGKGSKERLVPITDL 184

Query: 240 ---GFMKLLAMTPI--GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292
                 + L+   +    +  F+N    ++     +   K    KA + +  +AH +R  
Sbjct: 185 AIEALKEYLSTRGVYNSGDPLFLNRLGGRLTGDGLAYLVKNITIKANLARKVTAHSLRHS 244

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330
            AT   + G     L    G K++   + YT    DR++
Sbjct: 245 FATHMLNNGCDLRSLQEMLGHKSLSATQVYTHVSLDRLK 283


>gi|225013068|ref|ZP_03703483.1| integrase family protein [Flavobacteria bacterium MS024-2A]
 gi|225002796|gb|EEG40777.1| integrase family protein [Flavobacteria bacterium MS024-2A]
          Length = 289

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 44/250 (17%), Positives = 87/250 (34%), Gaps = 23/250 (9%)

Query: 94  SFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYV 153
            +    ++I     D     +      +   ++  +P +  + L+ +R  F + + + Y 
Sbjct: 25  QYFLINEKIEESPTDCSLDSVQKFIYET---AKILSPHTQARRLSGLRSFFDYLIFESYR 81

Query: 154 AINPCLSVERPKRKTEGIRPWTKEDMQ----QFKSFWSEGSQPRLAFEFLLYSGLRCSDS 209
             NP   +E PK   +     + E+++    Q      +G + R   E L  SG+R S+ 
Sbjct: 82  TSNPTDLIEAPKLGRKLPDVLSTEEIELMINQINLSHPQGQRNRAILEILYGSGIRVSEL 141

Query: 210 CRAGVQH--LQNNIFSIKTQKTGTIITVEL----PDGFMKLLAMTPI-------GKETFF 256
               + +   + ++  +   K      V +     +   + +  T          K+  F
Sbjct: 142 TNLSLSNLFFEEDMIRVH-GKGNKQRLVPMGGISKEFLEEYITETRKNQKISVKDKDIVF 200

Query: 257 INNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWK 314
           +N     +         K  A KA V K    H  R   AT   + GA    +    G +
Sbjct: 201 LNRRGNGLTRQMIFTLIKDLAIKANVKKQVGPHTFRHSFATHLLENGADLRTIQILMGHE 260

Query: 315 TVDQAETYTK 324
           ++   E YT 
Sbjct: 261 SITTTEIYTH 270


>gi|126663469|ref|ZP_01734466.1| site-specific recombinase [Flavobacteria bacterium BAL38]
 gi|126624417|gb|EAZ95108.1| site-specific recombinase [Flavobacteria bacterium BAL38]
          Length = 299

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 52/290 (17%), Positives = 99/290 (34%), Gaps = 28/290 (9%)

Query: 70  TLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYR----KITTKHIRSGVE 124
           T +  I EY+        L+ N+  ++    ++++      D +     I+ + I+  + 
Sbjct: 3   TWQSYIKEYQNYLRLERGLSKNTIENYTFDIEKLVVFLNTHDIQVSPIHISEETIQQFIY 62

Query: 125 SRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
                    S  + ++ ++  F + V ++Y    P   +E PK   +       E++   
Sbjct: 63  EIASKVNARSQSRLISGLKSFFNYLVFEDYRKDTPLELIEVPKTGRKLPDTLATEEIDAL 122

Query: 183 KSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH--LQNNIFSIKTQKTGTIITVE 236
            +       EG + R   E L   GLR S+     +     +     I T K      V 
Sbjct: 123 IAAIDLSTPEGERNRAMLETLYSCGLRVSELVGLKISDLFFEEGFIKI-TGKGNKQRFVP 181

Query: 237 L-----------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284
           +            +       +    ++T F+N   +++         K  A K  +NK 
Sbjct: 182 VGGSTIKYITSYMNLIRVHYTVQKGHEDTLFLNRRGKQLTRAMVFTIIKDLAVKINLNKT 241

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
            S H  R   AT   + GA    +    G +++   E Y    DR  L  
Sbjct: 242 ISPHTFRHSFATHLLENGADLRSIQLMLGHESITTTEVYMH-LDRKFLSE 290


>gi|293606638|ref|ZP_06688993.1| phage integrase family site-specific recombinase [Achromobacter
           piechaudii ATCC 43553]
 gi|292814922|gb|EFF74048.1| phage integrase family site-specific recombinase [Achromobacter
           piechaudii ATCC 43553]
          Length = 329

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 57/327 (17%), Positives = 108/327 (33%), Gaps = 37/327 (11%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHE-STFIPAYMSALTGSTPKREYINSPR 65
           LPP V ++   HG   YY + G   R+    P   + +   + +   G     E + +  
Sbjct: 11  LPPCVYEK---HG-AYYYVKAGKWTRLAADLPAALTEYARRFDNPRGGMPELVEKVLTHI 66

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
                                L+ N+   ++    +I     +F   +I  KH+ +    
Sbjct: 67  S------------------PKLSKNTIHQYKIAAARIKDSFAEFAPDQIRPKHVAALKMD 108

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
              TP+ A + L+ ++ +F  AV  + V  NPC+ + R   + +  R  T ++     + 
Sbjct: 109 MADTPNMANRVLSFLKTVFAHAVEWQLVDSNPCVGIRR-HAEGKRQRYITDDEYAAIYA- 166

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
                + ++  + L  +G R  D        +     +   QKTG  + V         +
Sbjct: 167 -KANPRMQVIMDLLYLTGQRVGDVIAIKRADMNEEGIAFDQQKTGAKLLVRWTPELRDAI 225

Query: 246 AMTPIGKETF----FINNDKQKMNATQFSI---WFKAKATKAGV-NKSAHGVRKFSATIS 297
           +                       A  +      +K     AGV +   H +R  S T +
Sbjct: 226 SRANALNGNVLGPTLFRTRSHGKTAPSYGATRDQWKDAVDAAGVPDAHIHDLRAKSLTDA 285

Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324
              G  A  L    G  +    + Y +
Sbjct: 286 KRQGKDAQMLA---GHTSPTMTDRYIR 309


>gi|254258575|ref|ZP_04949629.1| tyrosine recombinase XerD [Burkholderia pseudomallei 1710a]
 gi|254217264|gb|EET06648.1| tyrosine recombinase XerD [Burkholderia pseudomallei 1710a]
          Length = 333

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 53/307 (17%), Positives = 97/307 (31%), Gaps = 28/307 (9%)

Query: 52  TGSTPKREYINSPRKKPTTLKWLISE----YRKSAHW--GSLAVNSRISFESYFDQIIRK 105
            G  P +           +  WL S         A W    L+ N+  ++        + 
Sbjct: 17  AGRAPAQPADRPVDALAASPAWLDSRASIDLFCDAMWLEHGLSRNTLDAYRRDLQLFAQW 76

Query: 106 SGDFDYRKIT---TKHIRSGVESRKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV 161
                   +       +   + +R     +S+ + L+  R  + WAVR+   A++P L +
Sbjct: 77  LAARHVASVDHASEPTLTEYIAARSDGKATSSNRRLSVFRRYYGWAVREHRAAVDPTLRI 136

Query: 162 ERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217
              K+        ++  ++   +        G + R   E +  SGLR S+        +
Sbjct: 137 ASAKQAPRFPSTLSEAQVEALLAAPDVDTPLGLRDRTMLELMYASGLRVSELVTLKTVEV 196

Query: 218 QNNIFSIKTQKTGTIITV---------ELPDGFMKLLAMT--PIGKETFFINNDKQKMNA 266
             N   ++    G+   +          +                 +  F+      M  
Sbjct: 197 GLNEGVVRVTGKGSKERLVPFGEVAHGWIERYLRDARPALLGARAADALFVTARGDGMTR 256

Query: 267 TQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            QF    K  A +A V  + S H +R   AT   + GA    +    G   +   + YT 
Sbjct: 257 QQFWNIIKRHAQQADVRVHLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTH 316

Query: 325 GADRIRL 331
            A R RL
Sbjct: 317 VA-RERL 322


>gi|118579574|ref|YP_900824.1| tyrosine recombinase XerD [Pelobacter propionicus DSM 2379]
 gi|118502284|gb|ABK98766.1| tyrosine recombinase XerD subunit [Pelobacter propionicus DSM 2379]
          Length = 295

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 50/270 (18%), Positives = 101/270 (37%), Gaps = 24/270 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKH---TPSSAIQFLT 138
             LA N+R ++     + +      G  +  ++T   I S +   +     P+S  + L+
Sbjct: 16  RGLATNTRQAYSRDLGRYLDFLAERGKNEPAEVTAADIASFLVRLRDEGLAPASRARCLS 75

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRL 194
           ++R+  K+ + ++Y   NP   +E P+   +        ++ +  S  +    E  + R 
Sbjct: 76  AIRMFHKFLMIEKYCDDNPSAILEAPRTLHKLPAFLEPAEVDRLFSACAGTSGEDLRDRA 135

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGFM---------KL 244
             E L  +GLR S+     ++ +  ++  +    K      V + +              
Sbjct: 136 MLELLYATGLRVSELVTITLRQVNLDVGYLMVVGKGDKERLVPIGESARGRVRRYIEEAR 195

Query: 245 LAMTPIGK-ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301
             + P G+    F++     M+   F    + +A  A + K  S H +R   AT   + G
Sbjct: 196 YRLDPQGRTPHLFLSRLGDAMSRQAFWNLIRKRAKLAAIAKDISPHTLRHSFATHLLENG 255

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRL 331
           A    +    G   +   + YT    R RL
Sbjct: 256 ADLRSVQIMLGHADLSSTQIYTH-VTRERL 284


>gi|304396715|ref|ZP_07378595.1| tyrosine recombinase XerD [Pantoea sp. aB]
 gi|304355511|gb|EFM19878.1| tyrosine recombinase XerD [Pantoea sp. aB]
          Length = 297

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 48/270 (17%), Positives = 97/270 (35%), Gaps = 24/270 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
            +LA N+  S+      +                +  +   +      +  +S+ + L++
Sbjct: 18  RNLAQNTLSSYRQDLQTLTGWLAHHQLTLLSVTPLDLQQFLAERLEGGYKATSSARLLSA 77

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195
           MR LF++  R++    +P   +  PK      +  ++  +++             + +  
Sbjct: 78  MRRLFQYLYREKLRPDDPSALLSAPKLPQRLPKDLSEAQVERLLQAPNIDIPLELRDKAM 137

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVEL-------PDGFMKLLAM 247
            E L  +GLR S+     +  +      ++   K      V L        + +M+    
Sbjct: 138 LELLYATGLRVSELIGLTLSDISLRQGVVRVIGKGDKERLVPLGEEAVYWLEQYMEHGRP 197

Query: 248 TPIGKETF---FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG 301
             +  +T    F +N  Q+M    F    K  AT AG++    S H +R   AT   + G
Sbjct: 198 WLLNGQTLDVMFPSNRAQQMTRQTFWHRIKHYATLAGIDSEKLSPHVMRHAFATHLLNHG 257

Query: 302 ATAHELMATYGWKTVDQAETYTKGA-DRIR 330
           A    +    G   +   + YT  A +R+R
Sbjct: 258 ADLRVVQMLLGHSDLSTTQIYTHVATERLR 287


>gi|332086819|gb|EGI91955.1| tyrosine recombinase XerD [Shigella boydii 5216-82]
          Length = 298

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 43/270 (15%), Positives = 95/270 (35%), Gaps = 24/270 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGVESRKHTPSSAIQFLTS 139
            +LA N+  ++      ++             +    + + +      +  +S+ + L++
Sbjct: 19  KNLAENTLNAYRRDLSMMVEWLHHRGVTLATAQSDDLQALLAERLEGGYKATSSARLLSA 78

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195
           +R LF++  R+++   +P   +  PK      +  ++  +++             + +  
Sbjct: 79  VRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLIDQPLELRDKAM 138

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKET 254
            E L  +GLR S+     +  +      ++   K      V L +  +  L         
Sbjct: 139 LEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRP 198

Query: 255 FFIN----------NDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG 301
           + +N             Q+M    F    K  A  AG++    S H +R   AT   + G
Sbjct: 199 WLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHG 258

Query: 302 ATAHELMATYGWKTVDQAETYTKGA-DRIR 330
           A    +    G   +   + YT  A +R+R
Sbjct: 259 ADLRVVQMLLGHSDLSTTQIYTHVATERLR 288


>gi|324115089|gb|EGC09054.1| tyrosine recombinase XerD [Escherichia fergusonii B253]
          Length = 298

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 43/270 (15%), Positives = 94/270 (34%), Gaps = 24/270 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGVESRKHTPSSAIQFLTS 139
            +LA N+  ++      ++             +    + + +      +  +S+ + L++
Sbjct: 19  KNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGYKATSSARLLSA 78

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195
           +R LF++  R+ +   +P   +  PK      +  ++  +++             + +  
Sbjct: 79  VRRLFQYLYRENFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLIDQPLELRDKAM 138

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKET 254
            E L  +GLR S+     +  +      ++   K      V L +  +  L         
Sbjct: 139 LEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRP 198

Query: 255 FFIN----------NDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG 301
           + +N             Q+M    F    K  A  AG++    S H +R   AT   + G
Sbjct: 199 WLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHG 258

Query: 302 ATAHELMATYGWKTVDQAETYTKGA-DRIR 330
           A    +    G   +   + YT  A +R+R
Sbjct: 259 ADLRVVQMLLGHSDLSTTQIYTHVATERLR 288


>gi|284048544|ref|YP_003398883.1| tyrosine recombinase XerD [Acidaminococcus fermentans DSM 20731]
 gi|283952765|gb|ADB47568.1| tyrosine recombinase XerD [Acidaminococcus fermentans DSM 20731]
          Length = 301

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 48/265 (18%), Positives = 93/265 (35%), Gaps = 22/265 (8%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK---HTPSSAIQFLTSMRV 142
            LA N+R S+     ++           +  + I + +   K   + P+SA + L +++ 
Sbjct: 26  GLAYNTRESYGRDL-RLFAGWIKKPLEDVKREDILAYMRMLKVHQYAPTSASRKLAALKA 84

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFEF 198
            F++   + ++  +P   VE   R     +  + E+++Q  S       EG + R   E 
Sbjct: 85  FFRFMTAEGFLEEDPSEVVEAGTRGVVLPKVMSLEEVKQLFSAPDLTQPEGFRDRTMLEV 144

Query: 199 LLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVEL-----------PDGFMKLLA 246
           +  +G+R S+        +     + I   K      + L                 L  
Sbjct: 145 MYATGMRVSELLSLKRASVNLETRYVIAYGKGAKERLIPLGQYAIQYLKKYLAQVRPLFV 204

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATA 304
                 ++ F+      M   +F    +A   KAG+ K  + H +R   AT   D GA  
Sbjct: 205 KNGKDDDSLFLTIRGTGMTRQRFWQIIRAYGVKAGLQKPLTPHILRHSFATHMLDNGADL 264

Query: 305 HELMATYGWKTVDQAETYTKGADRI 329
             +    G   +   + YT   +  
Sbjct: 265 RTVQELLGHADISTTQIYTHLTNNR 289


>gi|157162354|ref|YP_001459672.1| site-specific tyrosine recombinase XerD [Escherichia coli HS]
 gi|157068034|gb|ABV07289.1| tyrosine recombinase XerD [Escherichia coli HS]
          Length = 298

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 43/270 (15%), Positives = 95/270 (35%), Gaps = 24/270 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGVESRKHTPSSAIQFLTS 139
            +LA N+  ++      ++             +    + + +      +  +S+ + L++
Sbjct: 19  KNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGYKATSSARLLSA 78

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195
           +R LF++  R+++   +P   +  PK      +  ++  +++             + +  
Sbjct: 79  VRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLIDQPLELRDKAM 138

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKET 254
            E L  +GLR S+     +  +      ++   K      V L +  +  L         
Sbjct: 139 LEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRP 198

Query: 255 FFIN----------NDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG 301
           + +N             Q+M    F    K  A  AG++    S H +R   AT   + G
Sbjct: 199 WLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHG 258

Query: 302 ATAHELMATYGWKTVDQAETYTKGA-DRIR 330
           A    +    G   +   + YT  A +R+R
Sbjct: 259 ADLRVVQMLLGHSDLSTTQIYTHVATERLR 288


>gi|323495869|ref|ZP_08100937.1| site-specific tyrosine recombinase XerD [Vibrio sinaloensis DSM
           21326]
 gi|323319085|gb|EGA72028.1| site-specific tyrosine recombinase XerD [Vibrio sinaloensis DSM
           21326]
          Length = 302

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 42/265 (15%), Positives = 98/265 (36%), Gaps = 23/265 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVESRKHTPSSAIQFLTS 139
             L+ N+  S+ +   ++++     +YR         +  ++ +    +  +S  + L++
Sbjct: 23  RGLSENTLASYRNDLMKLLQWMSSHNYRLDFISLSGLQEYQTWLVDEGYKQTSRARMLSA 82

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLA 195
           +R LF++  R++  A +P   +  PK      +  +++ +               + +  
Sbjct: 83  IRRLFQYLHREKRRADDPSALLVSPKLPKRLPKDLSEQQVDALLDAPDPNDPMELRDKAM 142

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAMTPIGK-- 252
            E L  +GLR ++     ++++      ++ T K G    V + +  +  +         
Sbjct: 143 LELLYATGLRVTELVSLTMENISLRQGVVRVTGKGGKERLVPMGENAVDWIETFLQQGRS 202

Query: 253 --------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATISADAG 301
                   +  F +   ++M    F    K  A  AG++    S H +R   AT   + G
Sbjct: 203 ELLGENTSDVVFPSKRARQMTRQTFWHRIKHYAVIAGIDADKLSPHVLRHAFATHLLNYG 262

Query: 302 ATAHELMATYGWKTVDQAETYTKGA 326
           A    +    G   +   + YT  A
Sbjct: 263 ADLRVVQMLLGHSDLSTTQIYTHVA 287


>gi|269959610|ref|ZP_06173991.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269835668|gb|EEZ89746.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 305

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 47/278 (16%), Positives = 102/278 (36%), Gaps = 26/278 (9%)

Query: 74  LISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVESR 126
           L+ ++   A W    L+ N+  S+ +   +++       YR         +  +S +   
Sbjct: 14  LVEQFL-DAMWMERGLSENTLASYRNDLMKLLAWMEQHSYRLDFISLSGLQEYQSYLVDL 72

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185
            +  +S  + L+++R LF++  R++  A +P   +  PK      +  ++E +       
Sbjct: 73  DYKQTSRARMLSAIRRLFQYIHREKVRADDPSALLVSPKLPQRLPKDISEEQVDALLDAP 132

Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGF 241
                   + +   E L  +GLR ++     ++++      ++ T K G    V + +  
Sbjct: 133 DPNDPVELRDKAMLELLYATGLRVTELVSLTMENVSLRQGVVRVTGKGGKERLVPMGENA 192

Query: 242 MKLLAMTP----------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288
           +  +                 +  F +   ++M    F    K  A  AG++    S H 
Sbjct: 193 VDWIETFIQQGRSALLGETTSDVVFPSKRARQMTRQTFWHRIKYYAVIAGIDTDQLSPHV 252

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           +R   AT   + GA    +    G   +   + YT  A
Sbjct: 253 LRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVA 290


>gi|197118261|ref|YP_002138688.1| integrase/recombinase XerD [Geobacter bemidjiensis Bem]
 gi|197087621|gb|ACH38892.1| integrase/recombinase XerD [Geobacter bemidjiensis Bem]
          Length = 292

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 48/267 (17%), Positives = 99/267 (37%), Gaps = 21/267 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFLTSMR 141
              A N+  ++    ++ +   G+ +   I    +   +   K     P S  + L+++R
Sbjct: 16  KGAAANTVSAYSRDLNRYLLFLGEREPDGIRPSDVTGFLAKLKGEGIAPRSRARALSALR 75

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLAFE 197
           +L ++ +R+ Y  +NP   +E PK   +     +  +++   S      ++  + +   E
Sbjct: 76  MLHRFLLREGYSELNPTAIIEAPKGVRKLPAVLSGREVEALLSSPLDTGAQELRDKAMLE 135

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG--------FMKLLAMT 248
            L  +GLR S+     +  +  +   + T  K      V + +           +     
Sbjct: 136 LLYATGLRVSELVGLKLSEVNLSAGYLMTIGKGDKERLVPMGESACHATGVYLQQARGEL 195

Query: 249 PIGKET--FFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATA 304
              K +   F++     M+   F    K +A +AGV  S   H +R   AT   + GA  
Sbjct: 196 LKEKASTLLFLSRLGGGMSRQAFWNIIKKRALQAGVRTSISPHTLRHSFATHLLENGADL 255

Query: 305 HELMATYGWKTVDQAETYTKGADRIRL 331
             +    G   +   + YT    R R+
Sbjct: 256 RSVQIMLGHADLSSTQIYTH-VTRERM 281


>gi|146297890|ref|YP_001192481.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
 gi|146152308|gb|ABQ03162.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
          Length = 298

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 50/279 (17%), Positives = 99/279 (35%), Gaps = 25/279 (8%)

Query: 71  LKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSG----DFDYRKITTKHIRSGVES 125
               I +Y+        L+ N+  ++    +++         +    KIT + I+  + +
Sbjct: 3   WNNYIKDYQSYLRIERGLSKNTIENYSFDIERLCLFLETNQIEVSPLKITDETIQQFIYA 62

Query: 126 --RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
             ++  P S  + ++ ++  F + V ++Y   +P   +E PK   +       +++    
Sbjct: 63  ISKEVNPRSQARIISGLKSFFSYLVFEDYRNDSPLELIESPKTGRKLPDTLAVKEIDALI 122

Query: 184 SFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELP 238
                   EG + R   E L   GLR S+     +  L  +  F   T K      V + 
Sbjct: 123 DAIDLSSNEGERNRAILESLYGCGLRVSELVSLKISDLYFDEGFIKITGKGNKERFVPIG 182

Query: 239 -----------DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS-- 285
                      +     L +    ++T F+N    ++         K  A K  +NKS  
Sbjct: 183 KLTQKYIQIYQNEVRVHLNIKKGCEDTLFLNRRGNQLTRAMIFTIIKDLAVKINLNKSIS 242

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            H +R   AT   + GA    +    G +++   E Y  
Sbjct: 243 PHTLRHSFATHLLENGADLRSIQLMLGHESITTTEIYVH 281


>gi|17547263|ref|NP_520665.1| site-specific tyrosine recombinase XerD [Ralstonia solanacearum
           GMI1000]
 gi|34222936|sp|Q8XWD0|XERD_RALSO RecName: Full=Tyrosine recombinase xerD
 gi|17429565|emb|CAD16251.1| probable integrase/recombinase protein [Ralstonia solanacearum
           GMI1000]
          Length = 308

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 51/306 (16%), Positives = 93/306 (30%), Gaps = 38/306 (12%)

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI----------I 103
           +    E +  P      ++              LA N+  ++                 +
Sbjct: 2   TQAAPETLPLPPSSTEAIQRFCDALWLED---GLARNTLDAYRRDLTLYAQWLAGRGKAL 58

Query: 104 RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163
            ++ D D            +       S+A +  T  +  F+WA+R+  V+ +P   +  
Sbjct: 59  DQTEDVDLSDYFAARHEDSL------ASTANRRRTVFKRFFQWALREHLVSADPTRLLST 112

Query: 164 PKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN 219
            K+     +  ++  ++   +        G + R   E +  SGLR S+        +  
Sbjct: 113 AKQPPRVPKTLSEAQVEALIAAPDVDAPLGLRDRAMIELMYASGLRVSEIVALKTVEVGL 172

Query: 220 NIFSIKT--QKTGTIITVELPDGFMKLLAMTPIGKET----------FFINNDKQKMNAT 267
           N   ++    K G    V         L        T           F+      M   
Sbjct: 173 NEGVVRVIGGKGGKDRLVPFGAEAGDWLRRYLRDGRTALLGERTADALFVTARGDGMTRQ 232

Query: 268 QFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
            F    K  A +A ++   S H +R   AT   + GA    +    G   +   + YT  
Sbjct: 233 AFWYLIKRYAQRADIHAPLSPHTLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHV 292

Query: 326 ADRIRL 331
           A R RL
Sbjct: 293 A-RERL 297


>gi|66046081|ref|YP_235922.1| Phage integrase:Phage integrase, N-terminal SAM-like [Pseudomonas
           syringae pv. syringae B728a]
 gi|63256788|gb|AAY37884.1| Phage integrase:Phage integrase, N-terminal SAM-like [Pseudomonas
           syringae pv. syringae B728a]
          Length = 344

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 59/332 (17%), Positives = 119/332 (35%), Gaps = 28/332 (8%)

Query: 11  VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSAL--TGSTPKREYINSPRKKP 68
           + K + R G + YY+  G   R  +P   +      Y  A+       K    ++  ++ 
Sbjct: 14  LRKRKQRSGVVYYYYDIGGSPRKEIPLGSD------YGMAIVEYAKLEKSRTSSALVQQV 67

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESR 126
            T  ++  +Y       + +  ++        Q+++   D       I  +H+   +  R
Sbjct: 68  LTFAYVAEKYMIEVV-PTKSPATQKDNARELKQLLKFFDDPPAPLEAIEPQHVVQYLRQR 126

Query: 127 KHT-PSSAIQFLTSMRVLFKWAVRQEYVA-INPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
             T P  A +    +  ++ +A+   Y A  NPC  V+  K            + + F  
Sbjct: 127 GKTAPVRANREKALLSAIWNFAMSAGYTALANPCAGVKGHKEVGRDHYI----EDEMFAL 182

Query: 185 FWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
            +S   QP R A +    +G R +D+ +   + +++    ++  KT     +E+      
Sbjct: 183 VYSHAEQPLRDALDLFYLTGQRIADTLKMDERDIRDGRLWVQQGKTNAKRRIEITGELKV 242

Query: 244 LLAMTPIGKE-------TFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFS 293
           ++      KE          + ++ Q M ++     F A    AGV K       +R  +
Sbjct: 243 VIDRIMTRKEGHRIRTSRLIVMDNGQPMTSSMLRERFDAAREAAGVEKGEFQMRDLRAKA 302

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKG 325
            T  A++     +     G  TV   E Y + 
Sbjct: 303 GTDKAESSGDILQARDQLGHTTVVMTENYIRK 334


>gi|15601958|ref|NP_245030.1| site-specific tyrosine recombinase XerD [Pasteurella multocida
           subsp. multocida str. Pm70]
 gi|31563286|sp|Q9CPF0|XERD_PASMU RecName: Full=Tyrosine recombinase xerD
 gi|12720303|gb|AAK02177.1| XerD [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 297

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 46/285 (16%), Positives = 99/285 (34%), Gaps = 27/285 (9%)

Query: 72  KWLISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVE 124
             LI  +     W    L+ N+  S+      +I+          +   I  +       
Sbjct: 4   SALIELFLNEI-WIEKQLSQNTIASYRLDLTALIQWLEKQQLTLINLDAIDLQTFLGERL 62

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
           ++ +  +S  + L++MR LF++  R++Y   +P   +  PK  +   +  T++ +    +
Sbjct: 63  NQGYKATSTARLLSAMRKLFQYLYREKYRTDDPSAVLSSPKLPSRLPKYLTEQQVTDLLN 122

Query: 185 F----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPD 239
                     + +   E L  +GLR ++     ++++  N   ++    G     V + +
Sbjct: 123 SPDVDIPLELRDKAMMELLYATGLRVTELVSLTIENININQGIVRVVGKGNKERIVPIGE 182

Query: 240 GFMKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSA 286
                +                 +  F +    +M    F    K  A  + ++    S 
Sbjct: 183 EATYWIRQFMLYGRPFLLHGQSSDVVFPSKRALQMTRQTFWHRIKHYALLSDIDINSLSP 242

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           H +R   AT   + GA    +    G   +   + YT  A + RL
Sbjct: 243 HVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVA-KERL 286


>gi|300088077|ref|YP_003758599.1| tyrosine recombinase XerD [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
 gi|299527810|gb|ADJ26278.1| tyrosine recombinase XerD [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
          Length = 303

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 44/282 (15%), Positives = 102/282 (36%), Gaps = 30/282 (10%)

Query: 85  GSLAVNSRISFESYFDQI-------IRKSGDFDY-RKITTKHIRSGVESRKHT---PSSA 133
              + N+R ++ +   Q+       +R+ GD D       + + S +   K      ++ 
Sbjct: 16  KGFSGNTRDAYHNDLYQLADFSTRCLRQRGDQDLWDNFNRQDMLSYLLDLKERNYAVTTV 75

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-----SE 188
           ++ L + +  F + + +  +  NP  ++E PK         + + ++            E
Sbjct: 76  VRKLAAAKSFFSFLLEENKIRQNPTDNIESPKVGKPLPDAISVQQVKALLEQPTLAGGPE 135

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLA- 246
             + R   E L  SG+R S+     +  +  +   ++   K      + +     ++++ 
Sbjct: 136 AKRDRAMLELLYASGMRVSELIGLDLADVDCDEEQVRCFGKGNKERIIPIHPQAARIVSE 195

Query: 247 ---------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSAT 295
                    +    ++  F+N   +++         K  A  AG+N   + H +R   AT
Sbjct: 196 YIEEVRPRLVRSNDEKALFLNRRGERLTRQGLWQILKEYAVAAGLNGQVTPHTLRHSFAT 255

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNS 336
              + GA    +    G   +   + YT   +D IR    ++
Sbjct: 256 HMLNGGADLRSVQELLGHANISTTQIYTHLTSDHIRRAYDSA 297


>gi|227112633|ref|ZP_03826289.1| site-specific tyrosine recombinase XerD [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 299

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 45/280 (16%), Positives = 96/280 (34%), Gaps = 26/280 (9%)

Query: 72  KWLISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFD-----YRKITTKHIRSGVE 124
           + LI ++   A W   +LA N+  S+      +       D      + +  +   +   
Sbjct: 6   QALIEQFL-DALWLERNLAENTLASYRLDLRTLAEWLAHHDNDLLQAQSLDLQAFLADRV 64

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
              +  +S+ + L++MR  F++  R++  + +P   +  PK      +  ++  +    +
Sbjct: 65  EGGYKATSSARLLSAMRRFFQYLYREKCRSDDPSAVLSSPKLPQRLPKDLSEAQVDTLLN 124

Query: 185 F----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPD 239
                     + +   E L  +GLR S+     +  +      ++   K      V L +
Sbjct: 125 APSIEQPLELRDKAMLEVLYATGLRVSELVSLTMSDVSLRQGVVRVLGKGNKERLVPLGE 184

Query: 240 GFMKLLAMTPIGKETFFIN----------NDKQKMNATQFSIWFKAKATKAGVN---KSA 286
             +  +         + +N          N  ++M    F    K  A  A ++    S 
Sbjct: 185 EAVYWIEYYLEHGRPWLLNGQTLDVLFPSNRARQMTRQTFWHRIKHYAVLASIDSEKLSP 244

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           H +R   AT   + GA    +    G   +   + YT  A
Sbjct: 245 HVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA 284


>gi|218258194|ref|ZP_03474596.1| hypothetical protein PRABACTJOHN_00250 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225689|gb|EEC98339.1| hypothetical protein PRABACTJOHN_00250 [Parabacteroides johnsonii
           DSM 18315]
          Length = 301

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 48/275 (17%), Positives = 97/275 (35%), Gaps = 27/275 (9%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQII-------RKSGDFDYRKITTKHIRSGVESR 126
           +  Y+       +L+ NS  ++ +  D++        +K  D  Y  +      + +   
Sbjct: 8   VERYKTYLRLEKALSANSIDAYLTDLDKLTNFVESEGKKYADVTYDDLQQ--FVARLHDI 65

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185
              P S  + ++ ++  +++     Y+  +P   +E PK   +     T  ++       
Sbjct: 66  GIHPRSQARIISGIKSFYRFLFLDNYITTDPTELLESPKIGLKLPEVLTVNEINSILDTI 125

Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-VELPDGF 241
                EG + R   E L   GLR S+        +  +   IK +  G+    V + +  
Sbjct: 126 DLTLPEGQRNRAMLEVLYSCGLRVSELVSLRFTDVYFDEGFIKVEGKGSKQRLVPISETA 185

Query: 242 MKLLA-------MTPIGK---ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289
           +K +          P+ K   +  F++     ++        K +   AG+ K  S H  
Sbjct: 186 IKEIKNYLYDRNHVPVKKGFEDILFLSRRGTALSRIMVFHIIKQQTEMAGIKKNVSPHTF 245

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           R   AT   + GA    +    G + +   E YT 
Sbjct: 246 RHSFATHLLEGGANLLAIQEMLGHEKITTTEIYTH 280


>gi|312972864|ref|ZP_07787037.1| tyrosine recombinase XerD [Escherichia coli 1827-70]
 gi|310332806|gb|EFQ00020.1| tyrosine recombinase XerD [Escherichia coli 1827-70]
          Length = 283

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 43/270 (15%), Positives = 95/270 (35%), Gaps = 24/270 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGVESRKHTPSSAIQFLTS 139
            +LA N+  ++      ++             +    + + +      +  +S+ + L++
Sbjct: 4   KNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGYKATSSARLLSA 63

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195
           +R LF++  R+++   +P   +  PK      +  ++  +++             + +  
Sbjct: 64  VRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLIDQPLELRDKAM 123

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKET 254
            E L  +GLR S+     +  +      ++   K      V L +  +  L         
Sbjct: 124 LEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRP 183

Query: 255 FFIN----------NDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG 301
           + +N             Q+M    F    K  A  AG++    S H +R   AT   + G
Sbjct: 184 WLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHG 243

Query: 302 ATAHELMATYGWKTVDQAETYTKGA-DRIR 330
           A    +    G   +   + YT  A +R+R
Sbjct: 244 ADLRVVQMLLGHSDLSTTQIYTHVATERLR 273


>gi|169350427|ref|ZP_02867365.1| hypothetical protein CLOSPI_01195 [Clostridium spiroforme DSM 1552]
 gi|169292747|gb|EDS74880.1| hypothetical protein CLOSPI_01195 [Clostridium spiroforme DSM 1552]
          Length = 298

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 53/281 (18%), Positives = 94/281 (33%), Gaps = 29/281 (10%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQI--------IRKSGDFDYRKITTKHIRS 121
           L  LI+EY     +  + + N+  S+               I    D DY  +  +   +
Sbjct: 3   LDKLINEYLDCLKYERNYSNNTIASYRREIMHFKVYLVQEGISDYNDVDY--LMLRGYLT 60

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM-- 179
            +  +    SS    L+++R  F + +++E++  NP   +E  K          +E+M  
Sbjct: 61  KLYDKNLAKSSINHRLSALRSFFDYLLKEEFIKDNPFKLIESQKVGQRNPDFLFQEEMID 120

Query: 180 --QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVE 236
                ++    G + +   E +  SGLRCS+     +  +  N +  +   K G    V 
Sbjct: 121 LLDSIETKDDLGIRNKAMLELMYASGLRCSEVANLQISDIDFNQMVVLVHGKGGKDRYVP 180

Query: 237 LP-----------DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK--AGVN 283
                        D     L +   G    F+N     +              K  A   
Sbjct: 181 FHEYARDWLVKYIDEARNNLMIKNAGHNFIFVNKLGNPLTNRGIENIVDRVTFKYDATKK 240

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              H +R   AT   +AGA    +    G K +   + YT 
Sbjct: 241 IHPHTIRHSFATHLLNAGADIRTVQELLGHKNLATTQVYTH 281


>gi|156932654|ref|YP_001436570.1| site-specific tyrosine recombinase XerD [Cronobacter sakazakii ATCC
           BAA-894]
 gi|156530908|gb|ABU75734.1| hypothetical protein ESA_00437 [Cronobacter sakazakii ATCC BAA-894]
          Length = 319

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 45/270 (16%), Positives = 96/270 (35%), Gaps = 24/270 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESR---KHTPSSAIQFLTS 139
            +LA NS  ++      ++            + +  +++ +  R    +  +S  + L++
Sbjct: 40  RNLAENSLSAYRRDLSMVVEWLHHRGLSLATVQSGDLQTLLAERVEGGYKATSTARMLSA 99

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195
           +R LF+   R++    +P   +  PK      +  ++  +++             + +  
Sbjct: 100 VRRLFQHLYREKIRDDDPSALLASPKLPQRLPKDLSEAQVERLLQAPTVEEPIELRDKAM 159

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKET 254
            E L  +GLR S+     +  +      ++   K      V L +  +  L         
Sbjct: 160 LEVLYATGLRVSELVGLTMSDVSLRQGVVRVIGKGNKERLVPLGEEAVYWLEQYLTHGRP 219

Query: 255 FFIN----------NDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG 301
           + +N          N  ++M    F    K  A  AG++    S H +R   AT   + G
Sbjct: 220 WLLNGQSLDILFPSNRARQMTRQTFWHRIKHYAQLAGIDSEKLSPHVLRHAFATHLLNHG 279

Query: 302 ATAHELMATYGWKTVDQAETYTKGA-DRIR 330
           A    +    G   +   + YT  A +R+R
Sbjct: 280 ADLRVVQMLLGHSDLSTTQIYTHVATERLR 309


>gi|317132368|ref|YP_004091682.1| integrase family protein [Ethanoligenens harbinense YUAN-3]
 gi|315470347|gb|ADU26951.1| integrase family protein [Ethanoligenens harbinense YUAN-3]
          Length = 294

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 47/280 (16%), Positives = 107/280 (38%), Gaps = 27/280 (9%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHTPSS 132
           S Y +     S++ ++  S++    Q ++     G+ D   +T   +   ++  +    S
Sbjct: 9   SAYLRDQ--KSVSASTLQSYQRDLKQFVQYLQQRGNEDPADVTAAELEMYLDVLRGKGRS 66

Query: 133 ---AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-- 187
                +F  S+R  F++ + +  ++ NP L +   + K       T  ++    +     
Sbjct: 67  EATISRFTASVRGFFQYLLLEGIISENPALLLHVERGKRCLPDILTSGEVDLLFAQPVCN 126

Query: 188 --EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL-------- 237
             +G + +   E L  +G+R S+     V  +   + ++  +      ++ +        
Sbjct: 127 DFKGYRDKAMLELLYATGIRVSELIALDVGDINLGLCTLFCRGPEKNRSIPIYNEAVQSI 186

Query: 238 ---PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292
               D     L M   G++  F+N   ++++   F    K+ A +AG+ K  + H +R  
Sbjct: 187 SLYLDNARSTLRMLH-GEKALFVNAGGRRLSRQGFWKIVKSYAGQAGIQKRITPHTLRHS 245

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRL 331
            A    + GA    +    G   +   + Y +   +R RL
Sbjct: 246 FAAHLLENGADLKSIQEMLGHSDISSTQIYEQIVQNRCRL 285


>gi|288933626|ref|YP_003437685.1| tyrosine recombinase XerD [Klebsiella variicola At-22]
 gi|288888355|gb|ADC56673.1| tyrosine recombinase XerD [Klebsiella variicola At-22]
          Length = 298

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 41/270 (15%), Positives = 96/270 (35%), Gaps = 24/270 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESR---KHTPSSAIQFLTS 139
            +LA N+  ++      ++            + +  +++ +  R    +  +S  + +++
Sbjct: 19  RNLAENTLSAYRRDLTMLVEWLHHRGLSLASVGSDDLQALLAERQTGGYKATSTARLISA 78

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195
           +R  F+   R++    +P   +  PK      +  ++  +++             + +  
Sbjct: 79  VRRFFQHLYREKIRPDDPSALLASPKLPQRLPKDLSEAQVERLLQAPLVEQPLELRDKAM 138

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLA-------- 246
            E L  +GLR S+     +  +      ++   K      V L +  +  +         
Sbjct: 139 LEVLYATGLRVSELVGLTMSDISLRQGVLRVIGKGNKERLVPLGEEAVMWVENYLEYGRP 198

Query: 247 --MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG 301
             +  +  +  F +   Q+M    F    K  A  AG++    S H +R   AT   + G
Sbjct: 199 WLLNGVASDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSAKLSPHVLRHAFATHLLNHG 258

Query: 302 ATAHELMATYGWKTVDQAETYTKGA-DRIR 330
           A    +    G   +   + YT  A +R+R
Sbjct: 259 ADLRVVQMLLGHSDLSTTQIYTHVATERLR 288


>gi|24114148|ref|NP_708658.1| site-specific tyrosine recombinase XerD [Shigella flexneri 2a str.
           301]
 gi|30064206|ref|NP_838377.1| site-specific tyrosine recombinase XerD [Shigella flexneri 2a str.
           2457T]
 gi|91212272|ref|YP_542258.1| site-specific tyrosine recombinase XerD [Escherichia coli UTI89]
 gi|218559887|ref|YP_002392800.1| site-specific tyrosine recombinase XerD [Escherichia coli S88]
 gi|237706462|ref|ZP_04536943.1| tyrosine recombinase xerD [Escherichia sp. 3_2_53FAA]
 gi|34222799|sp|Q7ZAM0|XERD_SHIFL RecName: Full=Tyrosine recombinase xerD
 gi|24053288|gb|AAN44365.1| site-specific recombinase [Shigella flexneri 2a str. 301]
 gi|30042463|gb|AAP18187.1| site-specific recombinase [Shigella flexneri 2a str. 2457T]
 gi|91073846|gb|ABE08727.1| site-specific recombinase [Escherichia coli UTI89]
 gi|218366656|emb|CAR04410.1| site-specific tyrosine recombinase [Escherichia coli S88]
 gi|226899502|gb|EEH85761.1| tyrosine recombinase xerD [Escherichia sp. 3_2_53FAA]
 gi|294492679|gb|ADE91435.1| tyrosine recombinase XerD [Escherichia coli IHE3034]
 gi|307625533|gb|ADN69837.1| site-specific tyrosine recombinase XerD [Escherichia coli UM146]
 gi|313647934|gb|EFS12380.1| tyrosine recombinase XerD [Shigella flexneri 2a str. 2457T]
 gi|315289443|gb|EFU48838.1| tyrosine recombinase XerD [Escherichia coli MS 110-3]
 gi|323951667|gb|EGB47542.1| tyrosine recombinase XerD [Escherichia coli H252]
 gi|323957385|gb|EGB53107.1| tyrosine recombinase XerD [Escherichia coli H263]
          Length = 298

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 43/270 (15%), Positives = 95/270 (35%), Gaps = 24/270 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGVESRKHTPSSAIQFLTS 139
            +LA N+  ++      ++             +    + + +      +  +S+ + L++
Sbjct: 19  KNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGYKATSSARLLSA 78

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195
           +R LF++  R+++   +P   +  PK      +  ++  +++             + +  
Sbjct: 79  VRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLIDQPLELRDKAM 138

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKET 254
            E L  +GLR S+     +  +      ++   K      V L +  +  L         
Sbjct: 139 LEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRP 198

Query: 255 FFIN----------NDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG 301
           + +N             Q+M    F    K  A  AG++    S H +R   AT   + G
Sbjct: 199 WLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHG 258

Query: 302 ATAHELMATYGWKTVDQAETYTKGA-DRIR 330
           A    +    G   +   + YT  A +R+R
Sbjct: 259 ADLRVVQMLLGHSDLSTTQIYTHVATERLR 288


>gi|116625461|ref|YP_827617.1| tyrosine recombinase XerD subunit [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116228623|gb|ABJ87332.1| tyrosine recombinase XerD subunit [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 302

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 49/266 (18%), Positives = 93/266 (34%), Gaps = 20/266 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRV 142
             L+ NS  ++ +   + ++ +GD          +     +     +  S  + LT++R 
Sbjct: 27  KGLSPNSISAYSADLARFVQFTGDVQEPPGVPEIRQYIDHLYQTGLSNRSVGRHLTTLRN 86

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLAFEF 198
            + + +R+  VA +P   +  P++     +    E++++           G + R   E 
Sbjct: 87  FYGFLLREGKVATDPTEHLRTPRQWQTIPKYLNLEEIERIIQAPDLAKPLGLRDRAMMEV 146

Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFMKLLAM---------- 247
           L  SGLR S+ C+ G+  L      ++T   G     V +    +  +            
Sbjct: 147 LYASGLRVSELCKLGIGDLDLEYQVLRTTGKGNKQRLVPVGKAAVLAVRAYLESGRPGLL 206

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAH 305
                   F+      M    F     A   KAG+    + H +R   AT   + GA   
Sbjct: 207 KGRASRYLFVTARGGCMTRQGFWKLLAAYGRKAGIFHGLTPHVLRHSFATHLLEGGADLR 266

Query: 306 ELMATYGWKTVDQAETYTKGADRIRL 331
            +    G   +   + YT    R RL
Sbjct: 267 SVQVMLGHADISTTQIYTH-VMRSRL 291


>gi|16130796|ref|NP_417370.1| site-specific tyrosine recombinase [Escherichia coli str. K-12
           substr. MG1655]
 gi|26249309|ref|NP_755349.1| site-specific tyrosine recombinase XerD [Escherichia coli CFT073]
 gi|74313452|ref|YP_311871.1| site-specific tyrosine recombinase XerD [Shigella sonnei Ss046]
 gi|82545483|ref|YP_409430.1| site-specific tyrosine recombinase XerD [Shigella boydii Sb227]
 gi|82778340|ref|YP_404689.1| site-specific tyrosine recombinase XerD [Shigella dysenteriae
           Sd197]
 gi|89109673|ref|AP_003453.1| site-specific tyrosine recombinase [Escherichia coli str. K-12
           substr. W3110]
 gi|110643042|ref|YP_670772.1| site-specific tyrosine recombinase XerD [Escherichia coli 536]
 gi|110806797|ref|YP_690317.1| site-specific tyrosine recombinase XerD [Shigella flexneri 5 str.
           8401]
 gi|157158312|ref|YP_001464231.1| site-specific tyrosine recombinase XerD [Escherichia coli E24377A]
 gi|168747627|ref|ZP_02772649.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4113]
 gi|168753832|ref|ZP_02778839.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4401]
 gi|168766887|ref|ZP_02791894.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4486]
 gi|168775771|ref|ZP_02800778.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4196]
 gi|168778907|ref|ZP_02803914.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4076]
 gi|168785740|ref|ZP_02810747.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC869]
 gi|168800027|ref|ZP_02825034.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC508]
 gi|170082455|ref|YP_001731775.1| site-specific tyrosine recombinase [Escherichia coli str. K-12
           substr. DH10B]
 gi|170681991|ref|YP_001745047.1| site-specific tyrosine recombinase XerD [Escherichia coli SMS-3-5]
 gi|187732006|ref|YP_001881663.1| site-specific tyrosine recombinase XerD [Shigella boydii CDC
           3083-94]
 gi|188496120|ref|ZP_03003390.1| tyrosine recombinase XerD [Escherichia coli 53638]
 gi|191166010|ref|ZP_03027846.1| tyrosine recombinase XerD [Escherichia coli B7A]
 gi|191173237|ref|ZP_03034768.1| tyrosine recombinase XerD [Escherichia coli F11]
 gi|193063471|ref|ZP_03044560.1| tyrosine recombinase XerD [Escherichia coli E22]
 gi|193070556|ref|ZP_03051495.1| tyrosine recombinase XerD [Escherichia coli E110019]
 gi|194426297|ref|ZP_03058852.1| tyrosine recombinase XerD [Escherichia coli B171]
 gi|194431675|ref|ZP_03063966.1| tyrosine recombinase XerD [Shigella dysenteriae 1012]
 gi|194436800|ref|ZP_03068900.1| tyrosine recombinase XerD [Escherichia coli 101-1]
 gi|195936512|ref|ZP_03081894.1| site-specific tyrosine recombinase XerD [Escherichia coli O157:H7
           str. EC4024]
 gi|208806438|ref|ZP_03248775.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4206]
 gi|208814608|ref|ZP_03255937.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4045]
 gi|208820065|ref|ZP_03260385.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4042]
 gi|209398903|ref|YP_002272368.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4115]
 gi|209920348|ref|YP_002294432.1| site-specific tyrosine recombinase XerD [Escherichia coli SE11]
 gi|215488194|ref|YP_002330625.1| site-specific tyrosine recombinase XerD [Escherichia coli O127:H6
           str. E2348/69]
 gi|218555442|ref|YP_002388355.1| site-specific tyrosine recombinase XerD [Escherichia coli IAI1]
 gi|218691019|ref|YP_002399231.1| site-specific tyrosine recombinase XerD [Escherichia coli ED1a]
 gi|218696489|ref|YP_002404156.1| site-specific tyrosine recombinase XerD [Escherichia coli 55989]
 gi|227888443|ref|ZP_04006248.1| site-specific tyrosine recombinase [Escherichia coli 83972]
 gi|238902019|ref|YP_002927815.1| site-specific tyrosine recombinase [Escherichia coli BW2952]
 gi|253772265|ref|YP_003035096.1| site-specific tyrosine recombinase XerD [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254162806|ref|YP_003045914.1| site-specific tyrosine recombinase XerD [Escherichia coli B str.
           REL606]
 gi|254794844|ref|YP_003079681.1| site-specific tyrosine recombinase XerD [Escherichia coli O157:H7
           str. TW14359]
 gi|256019308|ref|ZP_05433173.1| site-specific tyrosine recombinase XerD [Shigella sp. D9]
 gi|256024596|ref|ZP_05438461.1| site-specific tyrosine recombinase XerD [Escherichia sp. 4_1_40B]
 gi|260845562|ref|YP_003223340.1| site-specific tyrosine recombinase XerD [Escherichia coli O103:H2
           str. 12009]
 gi|260857017|ref|YP_003230908.1| site-specific tyrosine recombinase XerD [Escherichia coli O26:H11
           str. 11368]
 gi|260869571|ref|YP_003235973.1| site-specific tyrosine recombinase XerD [Escherichia coli O111:H-
           str. 11128]
 gi|261226207|ref|ZP_05940488.1| site-specific tyrosine recombinase [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261256538|ref|ZP_05949071.1| site-specific tyrosine recombinase XerD [Escherichia coli O157:H7
           str. FRIK966]
 gi|291284213|ref|YP_003501031.1| Tyrosine recombinase xerD [Escherichia coli O55:H7 str. CB9615]
 gi|293412253|ref|ZP_06654976.1| tyrosine recombinase XerD [Escherichia coli B354]
 gi|293416147|ref|ZP_06658787.1| tyrosine recombinase XerD [Escherichia coli B185]
 gi|293449216|ref|ZP_06663637.1| tyrosine recombinase XerD [Escherichia coli B088]
 gi|297521422|ref|ZP_06939808.1| site-specific tyrosine recombinase XerD [Escherichia coli OP50]
 gi|300815654|ref|ZP_07095878.1| tyrosine recombinase XerD [Escherichia coli MS 107-1]
 gi|300820698|ref|ZP_07100849.1| tyrosine recombinase XerD [Escherichia coli MS 119-7]
 gi|300906556|ref|ZP_07124247.1| tyrosine recombinase XerD [Escherichia coli MS 84-1]
 gi|300921226|ref|ZP_07137599.1| tyrosine recombinase XerD [Escherichia coli MS 115-1]
 gi|300925125|ref|ZP_07141039.1| tyrosine recombinase XerD [Escherichia coli MS 182-1]
 gi|300928170|ref|ZP_07143712.1| tyrosine recombinase XerD [Escherichia coli MS 187-1]
 gi|300936040|ref|ZP_07150988.1| tyrosine recombinase XerD [Escherichia coli MS 21-1]
 gi|300947617|ref|ZP_07161788.1| tyrosine recombinase XerD [Escherichia coli MS 116-1]
 gi|300954266|ref|ZP_07166729.1| tyrosine recombinase XerD [Escherichia coli MS 175-1]
 gi|300980312|ref|ZP_07174966.1| tyrosine recombinase XerD [Escherichia coli MS 45-1]
 gi|300995674|ref|ZP_07181202.1| tyrosine recombinase XerD [Escherichia coli MS 200-1]
 gi|301027808|ref|ZP_07191113.1| tyrosine recombinase XerD [Escherichia coli MS 196-1]
 gi|301049322|ref|ZP_07196292.1| tyrosine recombinase XerD [Escherichia coli MS 185-1]
 gi|301303052|ref|ZP_07209179.1| tyrosine recombinase XerD [Escherichia coli MS 124-1]
 gi|301327295|ref|ZP_07220551.1| tyrosine recombinase XerD [Escherichia coli MS 78-1]
 gi|301643756|ref|ZP_07243794.1| tyrosine recombinase XerD [Escherichia coli MS 146-1]
 gi|307139581|ref|ZP_07498937.1| site-specific tyrosine recombinase XerD [Escherichia coli H736]
 gi|307310487|ref|ZP_07590135.1| tyrosine recombinase XerD [Escherichia coli W]
 gi|309785299|ref|ZP_07679930.1| tyrosine recombinase XerD [Shigella dysenteriae 1617]
 gi|312964846|ref|ZP_07779086.1| tyrosine recombinase XerD [Escherichia coli 2362-75]
 gi|331643584|ref|ZP_08344715.1| tyrosine recombinase XerD [Escherichia coli H736]
 gi|331648640|ref|ZP_08349728.1| tyrosine recombinase XerD [Escherichia coli M605]
 gi|331659024|ref|ZP_08359966.1| tyrosine recombinase XerD [Escherichia coli TA206]
 gi|331664467|ref|ZP_08365373.1| tyrosine recombinase XerD [Escherichia coli TA143]
 gi|331669629|ref|ZP_08370475.1| tyrosine recombinase XerD [Escherichia coli TA271]
 gi|331674379|ref|ZP_08375139.1| tyrosine recombinase XerD [Escherichia coli TA280]
 gi|331678881|ref|ZP_08379555.1| tyrosine recombinase XerD [Escherichia coli H591]
 gi|331684520|ref|ZP_08385112.1| tyrosine recombinase XerD [Escherichia coli H299]
 gi|67475548|sp|P0A8P8|XERD_ECOLI RecName: Full=Tyrosine recombinase xerD
 gi|67475549|sp|P0A8P9|XERD_ECOL6 RecName: Full=Tyrosine recombinase xerD
 gi|26109717|gb|AAN81922.1|AE016766_10 Integrase/recombinase xerD [Escherichia coli CFT073]
 gi|147548|gb|AAA62787.1| xprB [Escherichia coli]
 gi|887844|gb|AAA83075.1| site-specific integrase/recombinase, with xerC [Escherichia coli]
 gi|1789261|gb|AAC75932.1| site-specific tyrosine recombinase [Escherichia coli str. K-12
           substr. MG1655]
 gi|73856929|gb|AAZ89636.1| site-specific recombinase [Shigella sonnei Ss046]
 gi|81242488|gb|ABB63198.1| site-specific recombinase [Shigella dysenteriae Sd197]
 gi|81246894|gb|ABB67602.1| site-specific recombinase [Shigella boydii Sb227]
 gi|85675706|dbj|BAE76959.1| site-specific tyrosine recombinase [Escherichia coli str. K12
           substr. W3110]
 gi|110344634|gb|ABG70871.1| integrase/recombinase XerD [Escherichia coli 536]
 gi|110616345|gb|ABF05012.1| site-specific recombinase [Shigella flexneri 5 str. 8401]
 gi|157080342|gb|ABV20050.1| tyrosine recombinase XerD [Escherichia coli E24377A]
 gi|169890290|gb|ACB03997.1| site-specific tyrosine recombinase [Escherichia coli str. K-12
           substr. DH10B]
 gi|170519709|gb|ACB17887.1| tyrosine recombinase XerD [Escherichia coli SMS-3-5]
 gi|187428998|gb|ACD08272.1| tyrosine recombinase XerD [Shigella boydii CDC 3083-94]
 gi|187768812|gb|EDU32656.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4196]
 gi|188017752|gb|EDU55874.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4113]
 gi|188491319|gb|EDU66422.1| tyrosine recombinase XerD [Escherichia coli 53638]
 gi|189003626|gb|EDU72612.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4076]
 gi|189358670|gb|EDU77089.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4401]
 gi|189363773|gb|EDU82192.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4486]
 gi|189373936|gb|EDU92352.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC869]
 gi|189377626|gb|EDU96042.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC508]
 gi|190903958|gb|EDV63671.1| tyrosine recombinase XerD [Escherichia coli B7A]
 gi|190906488|gb|EDV66096.1| tyrosine recombinase XerD [Escherichia coli F11]
 gi|192930748|gb|EDV83353.1| tyrosine recombinase XerD [Escherichia coli E22]
 gi|192956139|gb|EDV86603.1| tyrosine recombinase XerD [Escherichia coli E110019]
 gi|194415605|gb|EDX31872.1| tyrosine recombinase XerD [Escherichia coli B171]
 gi|194420031|gb|EDX36109.1| tyrosine recombinase XerD [Shigella dysenteriae 1012]
 gi|194424282|gb|EDX40269.1| tyrosine recombinase XerD [Escherichia coli 101-1]
 gi|208726239|gb|EDZ75840.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4206]
 gi|208735885|gb|EDZ84572.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4045]
 gi|208740188|gb|EDZ87870.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4042]
 gi|209160303|gb|ACI37736.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4115]
 gi|209760578|gb|ACI78601.1| site-specific recombinase [Escherichia coli]
 gi|209760582|gb|ACI78603.1| site-specific recombinase [Escherichia coli]
 gi|209760584|gb|ACI78604.1| site-specific recombinase [Escherichia coli]
 gi|209760586|gb|ACI78605.1| site-specific recombinase [Escherichia coli]
 gi|209913607|dbj|BAG78681.1| site-specific recombinase [Escherichia coli SE11]
 gi|215266266|emb|CAS10695.1| site-specific tyrosine recombinase [Escherichia coli O127:H6 str.
           E2348/69]
 gi|218353221|emb|CAU99139.1| site-specific tyrosine recombinase [Escherichia coli 55989]
 gi|218362210|emb|CAQ99828.1| site-specific tyrosine recombinase [Escherichia coli IAI1]
 gi|218428583|emb|CAR09510.2| site-specific tyrosine recombinase [Escherichia coli ED1a]
 gi|222034589|emb|CAP77331.1| Tyrosine recombinase xerD [Escherichia coli LF82]
 gi|227834712|gb|EEJ45178.1| site-specific tyrosine recombinase [Escherichia coli 83972]
 gi|238863557|gb|ACR65555.1| site-specific tyrosine recombinase [Escherichia coli BW2952]
 gi|242378425|emb|CAQ33206.1| site-specific recombinase, subunit of Xer site-specific
           recombination system [Escherichia coli BL21(DE3)]
 gi|253323309|gb|ACT27911.1| tyrosine recombinase XerD [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|253974707|gb|ACT40378.1| site-specific tyrosine recombinase XerD [Escherichia coli B str.
           REL606]
 gi|253978873|gb|ACT44543.1| site-specific tyrosine recombinase XerD [Escherichia coli
           BL21(DE3)]
 gi|254594244|gb|ACT73605.1| site-specific tyrosine recombinase [Escherichia coli O157:H7 str.
           TW14359]
 gi|257755666|dbj|BAI27168.1| site-specific tyrosine recombinase XerD [Escherichia coli O26:H11
           str. 11368]
 gi|257760709|dbj|BAI32206.1| site-specific tyrosine recombinase XerD [Escherichia coli O103:H2
           str. 12009]
 gi|257765927|dbj|BAI37422.1| site-specific tyrosine recombinase XerD [Escherichia coli O111:H-
           str. 11128]
 gi|260448060|gb|ACX38482.1| tyrosine recombinase XerD [Escherichia coli DH1]
 gi|281179899|dbj|BAI56229.1| site-specific recombinase [Escherichia coli SE15]
 gi|284922842|emb|CBG35931.1| tyrosine recombinase [Escherichia coli 042]
 gi|290764086|gb|ADD58047.1| Tyrosine recombinase xerD [Escherichia coli O55:H7 str. CB9615]
 gi|291322306|gb|EFE61735.1| tyrosine recombinase XerD [Escherichia coli B088]
 gi|291432336|gb|EFF05318.1| tyrosine recombinase XerD [Escherichia coli B185]
 gi|291469024|gb|EFF11515.1| tyrosine recombinase XerD [Escherichia coli B354]
 gi|299879070|gb|EFI87281.1| tyrosine recombinase XerD [Escherichia coli MS 196-1]
 gi|300298921|gb|EFJ55306.1| tyrosine recombinase XerD [Escherichia coli MS 185-1]
 gi|300304782|gb|EFJ59302.1| tyrosine recombinase XerD [Escherichia coli MS 200-1]
 gi|300318727|gb|EFJ68511.1| tyrosine recombinase XerD [Escherichia coli MS 175-1]
 gi|300401595|gb|EFJ85133.1| tyrosine recombinase XerD [Escherichia coli MS 84-1]
 gi|300409320|gb|EFJ92858.1| tyrosine recombinase XerD [Escherichia coli MS 45-1]
 gi|300411832|gb|EFJ95142.1| tyrosine recombinase XerD [Escherichia coli MS 115-1]
 gi|300418727|gb|EFK02038.1| tyrosine recombinase XerD [Escherichia coli MS 182-1]
 gi|300452792|gb|EFK16412.1| tyrosine recombinase XerD [Escherichia coli MS 116-1]
 gi|300458832|gb|EFK22325.1| tyrosine recombinase XerD [Escherichia coli MS 21-1]
 gi|300463810|gb|EFK27303.1| tyrosine recombinase XerD [Escherichia coli MS 187-1]
 gi|300526962|gb|EFK48031.1| tyrosine recombinase XerD [Escherichia coli MS 119-7]
 gi|300531583|gb|EFK52645.1| tyrosine recombinase XerD [Escherichia coli MS 107-1]
 gi|300841716|gb|EFK69476.1| tyrosine recombinase XerD [Escherichia coli MS 124-1]
 gi|300846158|gb|EFK73918.1| tyrosine recombinase XerD [Escherichia coli MS 78-1]
 gi|301077855|gb|EFK92661.1| tyrosine recombinase XerD [Escherichia coli MS 146-1]
 gi|306909382|gb|EFN39877.1| tyrosine recombinase XerD [Escherichia coli W]
 gi|307554870|gb|ADN47645.1| site-specific tyrosine recombinase XerD [Escherichia coli ABU
           83972]
 gi|308926419|gb|EFP71895.1| tyrosine recombinase XerD [Shigella dysenteriae 1617]
 gi|309703254|emb|CBJ02589.1| tyrosine recombinase [Escherichia coli ETEC H10407]
 gi|312290402|gb|EFR18282.1| tyrosine recombinase XerD [Escherichia coli 2362-75]
 gi|312947427|gb|ADR28254.1| site-specific tyrosine recombinase XerD [Escherichia coli O83:H1
           str. NRG 857C]
 gi|315062198|gb|ADT76525.1| site-specific tyrosine recombinase [Escherichia coli W]
 gi|315137493|dbj|BAJ44652.1| tyrosine recombinase xerD [Escherichia coli DH1]
 gi|315256777|gb|EFU36745.1| tyrosine recombinase XerD [Escherichia coli MS 85-1]
 gi|315293873|gb|EFU53225.1| tyrosine recombinase XerD [Escherichia coli MS 153-1]
 gi|315295682|gb|EFU55002.1| tyrosine recombinase XerD [Escherichia coli MS 16-3]
 gi|315614950|gb|EFU95588.1| tyrosine recombinase XerD [Escherichia coli 3431]
 gi|320175918|gb|EFW50996.1| Tyrosine recombinase XerD [Shigella dysenteriae CDC 74-1112]
 gi|320182203|gb|EFW57106.1| Tyrosine recombinase XerD [Shigella boydii ATCC 9905]
 gi|320184562|gb|EFW59363.1| Tyrosine recombinase XerD [Shigella flexneri CDC 796-83]
 gi|320189238|gb|EFW63897.1| Tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC1212]
 gi|320195013|gb|EFW69642.1| Tyrosine recombinase XerD [Escherichia coli WV_060327]
 gi|320202554|gb|EFW77124.1| Tyrosine recombinase XerD [Escherichia coli EC4100B]
 gi|320640537|gb|EFX10076.1| site-specific tyrosine recombinase XerD [Escherichia coli O157:H7
           str. G5101]
 gi|320645784|gb|EFX14769.1| site-specific tyrosine recombinase XerD [Escherichia coli O157:H-
           str. 493-89]
 gi|320651084|gb|EFX19524.1| site-specific tyrosine recombinase XerD [Escherichia coli O157:H-
           str. H 2687]
 gi|320656580|gb|EFX24476.1| site-specific tyrosine recombinase XerD [Escherichia coli O55:H7
           str. 3256-97 TW 07815]
 gi|320662100|gb|EFX29501.1| site-specific tyrosine recombinase XerD [Escherichia coli O55:H7
           str. USDA 5905]
 gi|320667175|gb|EFX34138.1| site-specific tyrosine recombinase XerD [Escherichia coli O157:H7
           str. LSU-61]
 gi|323162515|gb|EFZ48365.1| tyrosine recombinase XerD [Escherichia coli E128010]
 gi|323167900|gb|EFZ53590.1| tyrosine recombinase XerD [Shigella sonnei 53G]
 gi|323180338|gb|EFZ65890.1| tyrosine recombinase XerD [Escherichia coli 1180]
 gi|323183448|gb|EFZ68845.1| tyrosine recombinase XerD [Escherichia coli 1357]
 gi|323188707|gb|EFZ73992.1| tyrosine recombinase XerD [Escherichia coli RN587/1]
 gi|323377218|gb|ADX49486.1| tyrosine recombinase XerD [Escherichia coli KO11]
 gi|323935874|gb|EGB32173.1| tyrosine recombinase XerD [Escherichia coli E1520]
 gi|323941585|gb|EGB37765.1| tyrosine recombinase XerD [Escherichia coli E482]
 gi|323946620|gb|EGB42643.1| tyrosine recombinase XerD [Escherichia coli H120]
 gi|323960809|gb|EGB56430.1| tyrosine recombinase XerD [Escherichia coli H489]
 gi|323966695|gb|EGB62127.1| tyrosine recombinase XerD [Escherichia coli M863]
 gi|323971668|gb|EGB66897.1| tyrosine recombinase XerD [Escherichia coli TA007]
 gi|323978814|gb|EGB73895.1| tyrosine recombinase XerD [Escherichia coli TW10509]
 gi|324005546|gb|EGB74765.1| tyrosine recombinase XerD [Escherichia coli MS 57-2]
 gi|324011756|gb|EGB80975.1| tyrosine recombinase XerD [Escherichia coli MS 60-1]
 gi|324119935|gb|EGC13814.1| tyrosine recombinase XerD [Escherichia coli E1167]
 gi|325498455|gb|EGC96314.1| site-specific tyrosine recombinase [Escherichia fergusonii ECD227]
 gi|326343096|gb|EGD66864.1| Tyrosine recombinase XerD [Escherichia coli O157:H7 str. 1125]
 gi|327251657|gb|EGE63343.1| tyrosine recombinase XerD [Escherichia coli STEC_7v]
 gi|330908926|gb|EGH37440.1| tyrosine recombinase XerD [Escherichia coli AA86]
 gi|331037055|gb|EGI09279.1| tyrosine recombinase XerD [Escherichia coli H736]
 gi|331042387|gb|EGI14529.1| tyrosine recombinase XerD [Escherichia coli M605]
 gi|331053606|gb|EGI25635.1| tyrosine recombinase XerD [Escherichia coli TA206]
 gi|331058398|gb|EGI30379.1| tyrosine recombinase XerD [Escherichia coli TA143]
 gi|331063297|gb|EGI35210.1| tyrosine recombinase XerD [Escherichia coli TA271]
 gi|331068473|gb|EGI39868.1| tyrosine recombinase XerD [Escherichia coli TA280]
 gi|331073711|gb|EGI45032.1| tyrosine recombinase XerD [Escherichia coli H591]
 gi|331078135|gb|EGI49341.1| tyrosine recombinase XerD [Escherichia coli H299]
 gi|332087665|gb|EGI92792.1| tyrosine recombinase XerD [Shigella dysenteriae 155-74]
 gi|332090893|gb|EGI95984.1| tyrosine recombinase XerD [Shigella boydii 3594-74]
 gi|332102774|gb|EGJ06120.1| tyrosine recombinase xerD [Shigella sp. D9]
          Length = 298

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 43/270 (15%), Positives = 95/270 (35%), Gaps = 24/270 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGVESRKHTPSSAIQFLTS 139
            +LA N+  ++      ++             +    + + +      +  +S+ + L++
Sbjct: 19  KNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGYKATSSARLLSA 78

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195
           +R LF++  R+++   +P   +  PK      +  ++  +++             + +  
Sbjct: 79  VRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLIDQPLELRDKAM 138

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKET 254
            E L  +GLR S+     +  +      ++   K      V L +  +  L         
Sbjct: 139 LEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRP 198

Query: 255 FFIN----------NDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG 301
           + +N             Q+M    F    K  A  AG++    S H +R   AT   + G
Sbjct: 199 WLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHG 258

Query: 302 ATAHELMATYGWKTVDQAETYTKGA-DRIR 330
           A    +    G   +   + YT  A +R+R
Sbjct: 259 ADLRVVQMLLGHSDLSTTQIYTHVATERLR 288


>gi|162210085|ref|YP_332479.2| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei
           1710b]
          Length = 305

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 46/268 (17%), Positives = 88/268 (32%), Gaps = 22/268 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVESRKH-TPSSAIQFLTSM 140
             L+ N+  ++        +         +       +   + +R     +S+ + L+  
Sbjct: 28  HGLSRNTLDAYRRDLQLFAQWLAARHVASVDHASEPTLTEYIAARSDGKATSSNRRLSVF 87

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAF 196
           R  + WAVR+   A++P L +   K+        ++  ++   +        G + R   
Sbjct: 88  RRYYGWAVREHRAAVDPTLRIASAKQAPRFPSTLSEAQVEALLAAPDVDTPLGLRDRTML 147

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLLAM 247
           E +  SGLR S+        +  N   ++    G+   +          +          
Sbjct: 148 ELMYASGLRVSELVTLKTVEVGLNEGVVRVTGKGSKERLVPFGEVAHGWIERYLRDARPA 207

Query: 248 T--PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGAT 303
                  +  F+      M   QF    K  A +A V  + S H +R   AT   + GA 
Sbjct: 208 LLGARAADALFVTARGDGMTRQQFWNIIKRHAQQADVRVHLSPHTLRHAFATHLLNHGAD 267

Query: 304 AHELMATYGWKTVDQAETYTKGADRIRL 331
              +    G   +   + YT  A R RL
Sbjct: 268 LRVVQLLLGHSDISTTQIYTHVA-RERL 294


>gi|296536869|ref|ZP_06898916.1| integrase family protein [Roseomonas cervicalis ATCC 49957]
 gi|296262840|gb|EFH09418.1| integrase family protein [Roseomonas cervicalis ATCC 49957]
          Length = 388

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 55/341 (16%), Positives = 113/341 (33%), Gaps = 34/341 (9%)

Query: 3   PSLRLPPFV--TKERTRHGKII-YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKRE 59
           P+  +P  +   ++R   G    YYF +  G  +              ++       + E
Sbjct: 7   PAEDVPAGLKPIRKRLADGSFRTYYFDRRTGTAL---------GTDRAVAIERLRDMREE 57

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119
            +  P  +P + + L+S +R S  +      +R  +     +++R         IT   +
Sbjct: 58  ALAPPAVEPGSFEALVSAFRASPEYLDKRATTRQQYAYEMTELLRDLHGSLLSDITPAVV 117

Query: 120 RSGVESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
            +  +          A   +  +R+LF +A R+   A  P   V     +      WT +
Sbjct: 118 YAIRDRTAAAGHRHKANSLIRMLRILFGFAKRRGLAATKPTDDVPLIAVEPR-TAVWTPQ 176

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN------IFSIKTQKTGT 231
            ++ F +      Q  +A   LLY+  R SD      ++L  N         ++ +KT  
Sbjct: 177 QIEAFLTGARPSLQAGMA--LLLYTVQRLSDVMALTRENLHENPADGRLWIGLRQRKTSA 234

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK-------AKATKAGVNK 284
           ++          +L   P  +     +          F+  +         +  + G+  
Sbjct: 235 LVWTPCHQRLAAILRALPPEQHHLVPSPTGLPWPKRNFARSWDAHLQRRNKQLAEQGLPL 294

Query: 285 SA----HGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
                   +R+      A AGAT +++ A  G       + 
Sbjct: 295 IPALQRRDLRRTGMVQMALAGATPNQIAAVSGHSIDQTMKI 335


>gi|221068555|ref|ZP_03544660.1| tyrosine recombinase XerD [Comamonas testosteroni KF-1]
 gi|220713578|gb|EED68946.1| tyrosine recombinase XerD [Comamonas testosteroni KF-1]
          Length = 318

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 59/316 (18%), Positives = 109/316 (34%), Gaps = 28/316 (8%)

Query: 45  PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR 104
            A   A     P+      P+ +   L   I           L+ N+  ++        R
Sbjct: 3   EALKKARKSQIPEDWPQPLPQSQDA-LDEFIDALLLED---GLSHNTLSAYRRDLTAAAR 58

Query: 105 KSGDFDYRKITTKHIRSGVESR------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158
                   K+    + + ++            +S+ + LT +R  F WA+R++ +A +P 
Sbjct: 59  WLAQLQPPKVLDAALEADLQGYFTARVEGTKATSSNRRLTVLRRYFHWALREKRIAADPT 118

Query: 159 LSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSC--RA 212
           + +   K+     +  T+E ++            G + R   E +  SGLR S+    R 
Sbjct: 119 VRMLAAKQPPRTPKTLTQEQVEALLDAPDVETALGLRDRAMLELMYASGLRVSELVGVRM 178

Query: 213 GVQHLQNNIFSIKTQKTGTIITVE-------LPDGFMKLLAMTPIGKET--FFINNDKQK 263
               L++ +  +  +     +          L     +  A    G++T   F+      
Sbjct: 179 HELDLRSGVLRVTGKGRKERLVPFGQEAQHWLERYLQQARAAILGGQQTEEVFVTQRGAG 238

Query: 264 MNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
           M+   F +  K  A  AG+N   S H +R   AT   + GA    +    G   +     
Sbjct: 239 MSRVMFWVIVKKCAQIAGINSPLSPHTLRHAFATHLLNHGADLRVVQMLLGHADISTTTI 298

Query: 322 YTKGADRIRLGIKNSR 337
           YT  A R RL   ++ 
Sbjct: 299 YTHVA-RERLKALHAE 313


>gi|306812204|ref|ZP_07446402.1| site-specific tyrosine recombinase XerD [Escherichia coli NC101]
 gi|305854242|gb|EFM54680.1| site-specific tyrosine recombinase XerD [Escherichia coli NC101]
          Length = 298

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 43/270 (15%), Positives = 95/270 (35%), Gaps = 24/270 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGVESRKHTPSSAIQFLTS 139
            +LA N+  ++      ++             +    + + +      +  +S+ + L++
Sbjct: 19  KNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGYKATSSARLLSA 78

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195
           +R LF++  R+++   +P   +  PK      +  ++  +++             + +  
Sbjct: 79  VRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLIDQPLELRDKAM 138

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKET 254
            E L  +GLR S+     +  +      ++   K      V L +  +  L         
Sbjct: 139 LEVLYATGLRVSELVGLTMSDISLPQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRP 198

Query: 255 FFIN----------NDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG 301
           + +N             Q+M    F    K  A  AG++    S H +R   AT   + G
Sbjct: 199 WLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHG 258

Query: 302 ATAHELMATYGWKTVDQAETYTKGA-DRIR 330
           A    +    G   +   + YT  A +R+R
Sbjct: 259 ADLRVVQMLLGHSDLSTTQIYTHVATERLR 288


>gi|331654392|ref|ZP_08355392.1| tyrosine recombinase XerD [Escherichia coli M718]
 gi|331047774|gb|EGI19851.1| tyrosine recombinase XerD [Escherichia coli M718]
          Length = 298

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 44/270 (16%), Positives = 95/270 (35%), Gaps = 24/270 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTK-----HIRSGVESRKHTPSSAIQFLTS 139
            +LA N+  ++      ++           T +      + +      +  +S+ + L++
Sbjct: 19  KNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQCDDLQALLAERLEGGYKATSSARLLSA 78

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195
           +R LF++  R+++   +P   +  PK      +  ++  +++             + +  
Sbjct: 79  VRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLIDQPLELRDKAM 138

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKET 254
            E L  +GLR S+     +  +      ++   K      V L +  +  L         
Sbjct: 139 LEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRP 198

Query: 255 FFIN----------NDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG 301
           + +N             Q+M    F    K  A  AG++    S H +R   AT   + G
Sbjct: 199 WLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHG 258

Query: 302 ATAHELMATYGWKTVDQAETYTKGA-DRIR 330
           A    +    G   +   + YT  A +R+R
Sbjct: 259 ADLRVVQMLLGHSDLSTTQIYTHVATERLR 288


>gi|193212286|ref|YP_001998239.1| tyrosine recombinase XerD [Chlorobaculum parvum NCIB 8327]
 gi|193085763|gb|ACF11039.1| tyrosine recombinase XerD [Chlorobaculum parvum NCIB 8327]
          Length = 304

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 51/265 (19%), Positives = 95/265 (35%), Gaps = 25/265 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKHT---PSSAIQFLTS 139
            + + N+R S+ +   + +           + T  HIR  +E         SS  + +++
Sbjct: 23  RNFSGNTRESYLNDLGRYLAHLQGQQVKPEEATPDHIRQFIEELHDIGLEASSVARNISA 82

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKSFWSEGS---QP 192
           +R   K+ + +     NP  ++ +PK         T E+M    +        GS   + 
Sbjct: 83  IRSYHKFLLAERIAQANPAENIHQPKLARTLPSVLTVEEMMALLEAPLRRHPPGSFMLRD 142

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM---- 247
           +   E L  +G+R S+    G  +L  +   I+   K      V +     K L      
Sbjct: 143 KAMLELLYATGIRVSELIGLGKLNLYLDEGFIRVFGKGSKERLVPVGRNATKWLKRYLEE 202

Query: 248 ------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
                 +   K+  F+N+   K++        +  A  AG+ K  S H  R   AT   +
Sbjct: 203 LRPGMVSATSKDVLFLNSRGGKLSRMSAWNIVRQHAIIAGIEKPISPHTFRHSFATHLLE 262

Query: 300 AGATAHELMATYGWKTVDQAETYTK 324
            GA    +    G  ++   + YT 
Sbjct: 263 GGADLRAVQEMLGHSSIIATQIYTH 287


>gi|156973275|ref|YP_001444182.1| site-specific tyrosine recombinase XerD [Vibrio harveyi ATCC
           BAA-1116]
 gi|156524869|gb|ABU69955.1| hypothetical protein VIBHAR_00956 [Vibrio harveyi ATCC BAA-1116]
          Length = 305

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 47/278 (16%), Positives = 102/278 (36%), Gaps = 26/278 (9%)

Query: 74  LISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVESR 126
           L+ ++   A W    L+ N+  S+ +   +++       YR         +  +S +   
Sbjct: 14  LVEQFL-DAMWMERGLSENTLASYRNDLMKLLAWMEQHSYRLDFISLSGLQEYQSYLVDL 72

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185
            +  +S  + L+++R LF++  R++  A +P   +  PK      +  ++E +       
Sbjct: 73  DYKQTSRARMLSAIRRLFQYIHREKVRADDPSALLVSPKLPQRLPKDISEEQVDALLDAP 132

Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGF 241
                   + +   E L  +GLR ++     ++++      ++ T K G    V + +  
Sbjct: 133 DPNDPVELRDKAMLELLYATGLRVTELVSLTMENVSLRQGLVRVTGKGGKERLVPMGENA 192

Query: 242 MKLLAMTP----------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288
           +  +                 +  F +   ++M    F    K  A  AG++    S H 
Sbjct: 193 VDWIETFIQQGRSALLGETTSDVVFPSKRARQMTRQTFWHRIKYYAVIAGIDTDQLSPHV 252

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           +R   AT   + GA    +    G   +   + YT  A
Sbjct: 253 LRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVA 290


>gi|293372055|ref|ZP_06618451.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|19068096|gb|AAL29907.1| putative integrase [Bacteroides fragilis]
 gi|292632989|gb|EFF51573.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
          Length = 407

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 59/359 (16%), Positives = 116/359 (32%), Gaps = 33/359 (9%)

Query: 8   PPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYI----NS 63
           P F  K   R   +  Y       R           +            + +        
Sbjct: 58  PKFAVKHNRRKENLSLYL--IDKPRTPAERQQNKETLELATKIRAEREQEFKESMLGYRL 115

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG----DFDYRKITTKHI 119
            + +          Y  S     + +  +I+   + D +  +            IT + +
Sbjct: 116 KKDRTVNFLDYFQAYINSYTKKDIRMV-QIALSRFKDFLKEQYPMNEFSIKPELITKEMM 174

Query: 120 RSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR--PWT 175
              V   +       A       + + ++A+  + +  +PC SV   K  ++ +R    +
Sbjct: 175 EQFVAYLQSRSVGEGAKSIYQRFKKVIRYAIDHDVMLKDPCKSVT-CKVDSQMLRKDVLS 233

Query: 176 KEDMQQFKSFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTG- 230
            E++Q+  +   +   P  R AF F LY GLR  D      +++   N +   +  KT  
Sbjct: 234 PEEIQKLAACHYDNENPNVRRAFIFCLYCGLRFCDVKDLTYKNVDYANRLLKFEQSKTKG 293

Query: 231 ----TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284
               + + + L DG + ++   P+ K     N               K    +AG++K  
Sbjct: 294 HSASSGVVIPLNDGLLSIIGEAPVDKNCLIFNLP----TYESCCKSVKRWVKRAGIDKHI 349

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343
           S H  R   A    + GA    + +  G   +   E YT+  D  +L  +    +  + 
Sbjct: 350 SWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVD--KLKEEAINSLPELK 406


>gi|331269460|ref|YP_004395952.1| tyrosine recombinase XerD [Clostridium botulinum BKT015925]
 gi|329126010|gb|AEB75955.1| tyrosine recombinase XerD [Clostridium botulinum BKT015925]
          Length = 292

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 47/269 (17%), Positives = 97/269 (36%), Gaps = 20/269 (7%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYF----DQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
           +S+Y +      L+ N+  +++       + + ++  D     + +         ++   
Sbjct: 5   LSKYIEDMLKKELSKNTIEAYKRDLIKFGEFLNKRHEDILDSDMVSIMAYVQTLKKERKA 64

Query: 131 -SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-- 187
            SS I+ L ++R  +K+ ++      NP ++ E PK K       T +++ +F S     
Sbjct: 65  DSSIIRSLVAIRNFYKFLIKTGQNIDNPLINYEVPKNKRTLPETLTVDEVDKFLSAPDCN 124

Query: 188 --EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK-TGTIITVE-------- 236
             +G + +   E +  +G++ S+  R  +  +   +  IK +        +         
Sbjct: 125 EYKGIRDKAMLELMYATGMKVSELLRITIFDVNLKLSYIKCKGAKDKERIIPIGSYAVNC 184

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSA 294
           L +       M     E  F N    KM    F    K  A  A +NK    + +R   A
Sbjct: 185 LNEYLKVRDRMNADNLELLFCNLRGGKMTRQGFWKIVKKYAKDANINKKIDSYTLRHSFA 244

Query: 295 TISADAGATAHELMATYGWKTVDQAETYT 323
                 GA    +    G  T+   + Y+
Sbjct: 245 VHLLQNGADMKSVQELLGHNTIATTQIYS 273


>gi|300310183|ref|YP_003774275.1| site specific integrase/recombinase [Herbaspirillum seropedicae
           SmR1]
 gi|300072968|gb|ADJ62367.1| site specific integrase/recombinase protein [Herbaspirillum
           seropedicae SmR1]
          Length = 307

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 52/268 (19%), Positives = 97/268 (36%), Gaps = 23/268 (8%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRKI---TTKHIRSGVESRKH--TPSSAIQFLTSM 140
            L+ N+  ++     +          + +     + + +   +R     PSS+ + L  +
Sbjct: 30  GLSKNTLEAYRRDMTRYAHWLYQERAKALYETQAEDLNAYFAARHDQTKPSSSNRRLAVL 89

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAF 196
           +  F+ A+RQ +VA +PCL +   ++     +  ++  ++   +        G + R   
Sbjct: 90  KRFFQLALRQHHVAADPCLKLRSARQPQRFPKTLSEGQVEALLAAPDVSTPLGLRDRAMI 149

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-----ELPDGFMKLLAMTPIG 251
           E +  SGLR S+        +  N   ++    G+   +     E     M+ LA     
Sbjct: 150 ELMYASGLRVSELVLLKSIEVGMNEGVLRVTGKGSKTRLVPFGEEAGSWLMRYLAEARAQ 209

Query: 252 ------KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGAT 303
                  +  F+      M    F    K  A +AGV    S H +R   AT   + GA 
Sbjct: 210 ILQGQVDDALFVTARGGPMTRQMFWTLIKKYALQAGVTARLSPHTLRHAFATHLLNHGAD 269

Query: 304 AHELMATYGWKTVDQAETYTKGADRIRL 331
              +    G   +   + YT  A R RL
Sbjct: 270 LRVVQLLLGHADISTTQIYTHVA-RERL 296


>gi|37197590|dbj|BAC93429.1| site-specific recombinase XerD [Vibrio vulnificus YJ016]
          Length = 307

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 45/265 (16%), Positives = 98/265 (36%), Gaps = 23/265 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVESRKHTPSSAIQFLTS 139
             LA N+  S+ +   ++++      YR         +  +S +  + +  +S  + L++
Sbjct: 28  RGLAENTLASYRNDLMKLLQWMEANHYRLDFISLSGLQQYQSYLVDQDYKQTSRARMLSA 87

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195
           +R LF++  R++  A +P   +  PK      +  ++E +               + +  
Sbjct: 88  IRRLFQYLHREKVRADDPSALLVSPKLPQRLPKDISEEQVDALLDAPDPNDPVELRDKAM 147

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAMTP----- 249
            E L  +GLR ++     ++++      ++ T K G    V + +  +  +         
Sbjct: 148 LELLYATGLRVTELVSLTMENISLRQGVVRVTGKGGKERLVPMGENAIDWIETFIKQGRP 207

Query: 250 -----IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG 301
                   +  F +   ++M    F    K  A  AG++    S H +R   AT   + G
Sbjct: 208 ALLGETSSDVVFPSKRARQMTRQTFWHRIKFYAVIAGIDTDHLSPHVLRHAFATHLLNYG 267

Query: 302 ATAHELMATYGWKTVDQAETYTKGA 326
           A    +    G   +   + YT  A
Sbjct: 268 ADLRVVQMLLGHSDLSTTQIYTHVA 292


>gi|320355009|ref|YP_004196348.1| tyrosine recombinase XerD [Desulfobulbus propionicus DSM 2032]
 gi|320123511|gb|ADW19057.1| tyrosine recombinase XerD [Desulfobulbus propionicus DSM 2032]
          Length = 306

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 52/270 (19%), Positives = 94/270 (34%), Gaps = 24/270 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFD---YRKITTKHIRSGV---ESRKHTPSSAIQFLT 138
             LA N+  ++++  +   R   D D     +I  +H++        R+    S  + L 
Sbjct: 27  RRLARNTVAAYQADLEFFFRFFSDADAILIERIDKEHVQQFFQYCHQRRIGARSNARRLA 86

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRL 194
           ++R  F++   +  +A NP   ++ PK      +  T  ++       S  +    +   
Sbjct: 87  ALRAFFRFLQDRGVLAGNPLAEIDAPKIGRSLPKVLTIAEVDALLRPPSPPTPLAIRNHA 146

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLA------- 246
               L  SGLR S+     V     +   ++   K      V        +L        
Sbjct: 147 MLHLLYASGLRVSELVNLPVNGCNLHTGHLRILGKGNKERIVPFSAVAGTILRDYIERVR 206

Query: 247 ---MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301
              +   G    F +N  + M   +F    +  A  AG+ K  S H +R   AT     G
Sbjct: 207 PLLLKGKGSPLLFCSNRGEAMTRHRFWQIVREIALIAGIRKAISPHVLRHSFATHLVAGG 266

Query: 302 ATAHELMATYGWKTVDQAETYTK-GADRIR 330
           A    +    G   +   + YT   ADR++
Sbjct: 267 ADLRSVQMMLGHSDIATTQIYTHVDADRLK 296


>gi|90413180|ref|ZP_01221176.1| tyrosine recombinase [Photobacterium profundum 3TCK]
 gi|90325871|gb|EAS42323.1| tyrosine recombinase [Photobacterium profundum 3TCK]
          Length = 298

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 42/265 (15%), Positives = 98/265 (36%), Gaps = 23/265 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVESRKHTPSSAIQFLTS 139
             L+ N+ +S+ +   ++ + S D +YR +T      +  +  +       +S  + +++
Sbjct: 19  RGLSENTLMSYRNDLTKLRKWSEDKNYRLVTLSSDDLQRYQQWLFDADFKQTSRARMVSA 78

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKSFWSEGSQPRLA 195
           +R LF++  R++    +P   +  P+      +  T+E +        +      + +  
Sbjct: 79  IRRLFQYLYREKMRDDDPSSMMVSPRLPKRLPKDLTEEQVGALLDAPDTNNPIELRDKAM 138

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFMKLLAMTPIGK-- 252
            E L  +GLR ++     ++++      ++    G     V + +  +  +         
Sbjct: 139 LELLYATGLRVTELVSLTMENVSLRQGVVRVMGKGDKERLVPMGESAIDWIEEFIDSGRP 198

Query: 253 --------ETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG 301
                   +  F +   ++M    F    K  A  AG++    S H +R   AT   + G
Sbjct: 199 QLLGEKSSDVLFPSKRARQMTRQTFWHRIKHYAVIAGIDTDTLSPHVMRHAFATHLLNYG 258

Query: 302 ATAHELMATYGWKTVDQAETYTKGA 326
           A    +    G   +   + YT  A
Sbjct: 259 ADLRVVQMLLGHSDLSTTQIYTHVA 283


>gi|225388004|ref|ZP_03757728.1| hypothetical protein CLOSTASPAR_01737 [Clostridium asparagiforme
           DSM 15981]
 gi|225045926|gb|EEG56172.1| hypothetical protein CLOSTASPAR_01737 [Clostridium asparagiforme
           DSM 15981]
          Length = 283

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 41/261 (15%), Positives = 84/261 (32%), Gaps = 22/261 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTK------HIRSGVESRKHTPSSAIQFLT 138
              + N+ IS++    Q+          +               +E      ++  + L 
Sbjct: 16  KKASKNTVISYQRDLVQLAAYLEAKGITEAEKVTKTSLNSYILYLEKEGKATTTISRELA 75

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK----SFWSEGSQPRL 194
           S++  F + +R+  +  +P   ++ PK + +     T  ++            +  + + 
Sbjct: 76  SIKAFFHYELREGRIRRDPAEFIKAPKVEKKAPVILTVNEVNALLCQPGDRTPKELRDKA 135

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254
             E L  +G+R S+     +  +   +  I  +       V       + L        T
Sbjct: 136 MLELLYATGIRVSELISLKLTDVNMQVGYITCRDRSKERMVPFGKNARQALVQYMGEART 195

Query: 255 ----------FFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGA 302
                      F N + Q M+   F    K    KAG+  + + H +R   A     +GA
Sbjct: 196 ELLKGKNSDWLFTNCNGQAMSRQGFWKLIKQYGEKAGIKSDITPHTLRHSFAAHLIRSGA 255

Query: 303 TAHELMATYGWKTVDQAETYT 323
             H + A  G       + YT
Sbjct: 256 DIHAVQAMLGHSDTATTQIYT 276


>gi|297374655|emb|CBL42942.1| phage integrase family protein [Candidatus Magnetobacterium
           bavaricum]
          Length = 324

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 52/323 (16%), Positives = 109/323 (33%), Gaps = 18/323 (5%)

Query: 22  IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKS 81
           ++Y          L    +      ++ AL     K + +   R    +L+  +  Y   
Sbjct: 10  VWYVEVKRNVVRSLQTRDDREARQRFV-ALQREAVKGKLVVLDRTPTMSLQEFVKAYL-- 66

Query: 82  AHW--GSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVESRKHTPSSAIQ 135
             W   + A  +    E    ++    G      D +K       +   S K+ P++   
Sbjct: 67  -EWCQSNRAGRTCERAELALRKLTEVVGKNKLIADIKKKNMDDYVAYCTSIKNKPTTINI 125

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195
            +  ++  F WAV +EY+  NP    ++ K +    R  ++  +Q   +   +    RL 
Sbjct: 126 EIRHIKAAFSWAVEREYLKTNPFAGYKQLKYQNTIPRFLSENQIQDVYTAIGDNKTYRLI 185

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF 255
           F   +++G R ++        ++ +    +  KT     +    G   +L+    G    
Sbjct: 186 FALYIHTGARRNEIQNIKWSDIKPDGIIFEKTKTYRSRKIPTSKGLKAILSEYDRGIGQI 245

Query: 256 FINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWK 314
           F       +  +  S   K    KAG+     H +R   A++   AG     +    G  
Sbjct: 246 F------NITPSHISHVMKDYFKKAGIGHFKLHDLRHTFASLLVQAGIDLRTIQVLLGHT 299

Query: 315 TVDQAETYTK-GADRIRLGIKNS 336
           +      Y     ++++  I + 
Sbjct: 300 SYSTTLIYAHLSQNQLQDAIDHI 322


>gi|313673072|ref|YP_004051183.1| integrase family protein [Calditerrivibrio nitroreducens DSM 19672]
 gi|312939828|gb|ADR19020.1| integrase family protein [Calditerrivibrio nitroreducens DSM 19672]
          Length = 300

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 39/263 (14%), Positives = 100/263 (38%), Gaps = 23/263 (8%)

Query: 85  GSLAVNSRISFESYFDQIIR--KSGDFDYRKIT---TKHIRSGVESRKHTPSSAIQFLTS 139
            + + ++  S+ +   ++I   K    D ++I     +   + +  R  + SS  + +++
Sbjct: 18  KNASDHTIRSYMNDLVELINFVKDESIDIKEIDFFALRGYITTLYDRSLSKSSIERKIST 77

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKSFWSEGSQPRLA 195
           ++  FK+  ++ Y+  N    ++ PK++ +  + +  +D+    +       +G +  L 
Sbjct: 78  IKSFFKFLTQKGYLEENHARMLKFPKKEKKLFKVFNIDDLFTLLELPDKNTPQGIRDALL 137

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPD-----------GFMK 243
            E +  +G+R S+     +  +      ++ +  G     + L +               
Sbjct: 138 MELMYGTGVRVSELVGIKIDDIDFQGLRVRVRGKGKKERMIPLAEFHIDFIKKYLATRDD 197

Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301
           +     I  +  FIN +   ++        +     AG+    S H  R   AT   ++G
Sbjct: 198 IPKSRTIKTDKLFINKNGTSLSDRSVRRIVEKYLKMAGLPLDFSPHSFRHSFATHMLESG 257

Query: 302 ATAHELMATYGWKTVDQAETYTK 324
           A    + +  G  ++   + YT 
Sbjct: 258 ADLRTIQSLLGHSSLSTTQKYTH 280


>gi|157148431|ref|YP_001455750.1| site-specific tyrosine recombinase XerD [Citrobacter koseri ATCC
           BAA-895]
 gi|157085636|gb|ABV15314.1| hypothetical protein CKO_04256 [Citrobacter koseri ATCC BAA-895]
          Length = 298

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 42/270 (15%), Positives = 92/270 (34%), Gaps = 24/270 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
            +LA N+  ++      ++             +    + + +      +  +S+ + L++
Sbjct: 19  RNLAENTLSAYRRDLSMVVEWLHHRGKTLATVQSDDLQTLLAERMDGGYKATSSARLLSA 78

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195
            R  F+   R+++   +P   +  PK      +  ++  +++             + +  
Sbjct: 79  TRRFFQHLYREKFREDDPSAQLASPKLPQRLPKDLSEAQVERLLQSPVVDQPLELRDKAM 138

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKET 254
            E L  +GLR S+     +  +      ++   K      V L +  +  L         
Sbjct: 139 LEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRP 198

Query: 255 FFIN----------NDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG 301
           + +N             Q+M    F    K  A  AG++    S H +R   AT   + G
Sbjct: 199 WLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHG 258

Query: 302 ATAHELMATYGWKTVDQAETYTKGA-DRIR 330
           A    +    G   +   + YT  A +R+R
Sbjct: 259 ADLRVVQMLLGHSDLSTTQIYTHVATERLR 288


>gi|218550141|ref|YP_002383932.1| site-specific tyrosine recombinase XerD [Escherichia fergusonii
           ATCC 35469]
 gi|218357682|emb|CAQ90323.1| site-specific tyrosine recombinase [Escherichia fergusonii ATCC
           35469]
          Length = 298

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 41/265 (15%), Positives = 91/265 (34%), Gaps = 23/265 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGVESRKHTPSSAIQFLTS 139
            +LA N+  ++      ++             +    + + +      +  +S+ + L++
Sbjct: 19  KNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGYKATSSARLLSA 78

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195
           +R LF++  R+++   +P   +  PK      +  ++  +++             + +  
Sbjct: 79  VRRLFQYLYRKKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLIDQPLELRDKAM 138

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKET 254
            E L  +GLR S+     +  +      ++   K      V L +  +  L         
Sbjct: 139 LEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRP 198

Query: 255 FFIN----------NDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG 301
           + +N             Q+M    F    K  A  AG++    S H +R   AT   + G
Sbjct: 199 WLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHG 258

Query: 302 ATAHELMATYGWKTVDQAETYTKGA 326
           A    +    G   +   + YT  A
Sbjct: 259 ADLRVVQMLLGHSDLSTTQIYTHVA 283


>gi|326204549|ref|ZP_08194406.1| integrase family protein [Clostridium papyrosolvens DSM 2782]
 gi|325985342|gb|EGD46181.1| integrase family protein [Clostridium papyrosolvens DSM 2782]
          Length = 297

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 48/261 (18%), Positives = 99/261 (37%), Gaps = 21/261 (8%)

Query: 97  SYFDQIIRKSGDFD-YRKITTKHIRSGVE----SRKHTPSSAIQFLTSMRVLFKWAVRQE 151
           S F   +   G       ITT  +R         +K+   +  + + S+R  F + + QE
Sbjct: 33  SIFSSFVESQGIKPTVDAITTPLLRKYTTFLKIDKKYEVETIRRKINSLRSFFSFLISQE 92

Query: 152 YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP-----RLAFEFLLYSGLRC 206
           Y+  NP   +  PK+          ++++   S   + S+      +   E L+++GLR 
Sbjct: 93  YIDKNPMAPITAPKKPDRLPIYLKPDEIKLLISMPMKHSRDNKLRDKCIIETLVFTGLRR 152

Query: 207 SDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLL-----AMTPIGKETFFINN 259
           S+      Q++   +N  ++   K      V + +  +  L        P+     FI+ 
Sbjct: 153 SELLSLNWQNIDFGSNTITVLNGKGKKQRVVPITEPLISDLWAYLQTRLPLHDNAVFISG 212

Query: 260 DKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAGATAHELMATYGWKTV 316
           +  +++ T  +  F+     AG+     + H +R    T+    GA    + +  G   +
Sbjct: 213 NGTRLSTTPLNQLFRRYLKLAGLTGKGYTIHKLRHSYGTLLLQNGADLISIQSLMGHNDL 272

Query: 317 DQAETYTKGADRIRLGIKNSR 337
           +  + YT   D   L  +  +
Sbjct: 273 NTTKIYTH-VDMKHLKQEVKK 292


>gi|28198560|ref|NP_778874.1| site-specific tyrosine recombinase XerD [Xylella fastidiosa
           Temecula1]
 gi|182681239|ref|YP_001829399.1| site-specific tyrosine recombinase XerD [Xylella fastidiosa M23]
 gi|73920482|sp|Q87DN0|XERD_XYLFT RecName: Full=Tyrosine recombinase xerD
 gi|28056644|gb|AAO28523.1| integrase/recombinase [Xylella fastidiosa Temecula1]
 gi|182631349|gb|ACB92125.1| tyrosine recombinase XerD [Xylella fastidiosa M23]
 gi|307579687|gb|ADN63656.1| site-specific tyrosine recombinase XerD [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 324

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 52/274 (18%), Positives = 95/274 (34%), Gaps = 30/274 (10%)

Query: 85  GSLAVNSRISFESYFDQIIR----KSGDFD-YRKITTKHIRSGVESRKHTPSSAIQFLTS 139
             L+ ++  S+    + + R    ++G              +    + ++P S  +  + 
Sbjct: 38  HGLSRHTLNSYRRDLEGLARWNNGRAGPLATLTPPALLDYLTWRTQQHYSPLSNARLRSV 97

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195
           +R  F +AV   +   NP   +  P       +  T+  ++   +       EG + R  
Sbjct: 98  LRTFFSYAVECGWRNDNPSTLLAHPVLPHPLPKALTESQIEALLAAPSIETPEGLRNRAM 157

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLA-------- 246
            E +  +GLR S+     V  L      ++ T K G    V L +     L         
Sbjct: 158 LELMYAAGLRVSELVTLPVAMLNQRQGVLRITGKGGKERLVPLGEESQHWLQRYLEQARP 217

Query: 247 ---------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSA 294
                        G    FIN + ++++  QF  W K  A   G+     S H +R   A
Sbjct: 218 SLAADKPIPADSDGDVPLFINTNLKRLSRQQFWRWIKHYAALVGIAPNKVSPHVLRHSFA 277

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           T   + GA    L    G +++   + YT  A +
Sbjct: 278 THLLNHGADLRALQMLLGHRSISTTQIYTLIARQ 311


>gi|46580064|ref|YP_010872.1| phage integrase family site specific recombinase [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|46449480|gb|AAS96131.1| site-specific recombinase, phage integrase family [Desulfovibrio
           vulgaris str. Hildenborough]
          Length = 294

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 48/267 (17%), Positives = 91/267 (34%), Gaps = 21/267 (7%)

Query: 85  GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVESRKHTP--SSAIQFLTS 139
             LA N+  ++ +   ++   + + G               V+ R+      +  + L +
Sbjct: 12  RGLAENTLAAYSADLIELQVFLEERGCLLAEVDEQTLFMHVVDLRRRGMAGRTLARHLAT 71

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLA 195
           +R  F +AV +  +  +P L +E PK         T+++M    +        G + R  
Sbjct: 72  LRGFFAFAVGEGELEADPALFLENPKLARNLPDVLTRDEMATILARPDLSDRLGFRDRTM 131

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLLA 246
            E +  +GLR S+ C             ++    G    +          +         
Sbjct: 132 LELMYAAGLRVSELCALRPLDFDAQAGVVRVFGKGAKERIVPVHHVSCALVTAYLRDWRP 191

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATA 304
                +   F+N   + ++        K    +AG++K  S H  R   AT   + GA  
Sbjct: 192 AFSPVEPAMFLNRSGKGLSRQAVWKVVKRHVAEAGIHKDISPHTFRHSFATHLLEGGADL 251

Query: 305 HELMATYGWKTVDQAETYTK-GADRIR 330
             +    G   +   E YT   ADR+R
Sbjct: 252 RSVQLLLGHADISATEIYTHVQADRLR 278


>gi|124383411|ref|YP_001028462.1| site-specific tyrosine recombinase XerD [Burkholderia mallei NCTC
           10229]
 gi|254177062|ref|ZP_04883719.1| tyrosine recombinase XerD [Burkholderia mallei ATCC 10399]
 gi|254187507|ref|ZP_04894019.1| tyrosine recombinase XerD [Burkholderia pseudomallei Pasteur 52237]
 gi|124291431|gb|ABN00700.1| tyrosine recombinase XerD [Burkholderia mallei NCTC 10229]
 gi|157935187|gb|EDO90857.1| tyrosine recombinase XerD [Burkholderia pseudomallei Pasteur 52237]
 gi|160698103|gb|EDP88073.1| tyrosine recombinase XerD [Burkholderia mallei ATCC 10399]
          Length = 329

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 53/307 (17%), Positives = 96/307 (31%), Gaps = 28/307 (9%)

Query: 52  TGSTPKREYINSPRKKPTTLKWLISE----YRKSAHW--GSLAVNSRISFESYFDQIIRK 105
            G  P             +  WL S         A W    L+ N+  ++        + 
Sbjct: 13  AGRAPAPPADRPVDALAASPAWLDSRASIDLFCDAMWLEHGLSRNTLDAYRRDLQLFAQW 72

Query: 106 SGDFDYRKIT---TKHIRSGVESRKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV 161
                   +       +   + +R     +S+ + L+  R  + WAVR+   A++P L +
Sbjct: 73  LAARHAASVDHASEPTLTEYIAARSDGKATSSNRRLSVFRRYYGWAVREHRAAVDPTLRI 132

Query: 162 ERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217
              K+        ++  ++   +        G + R   E +  SGLR S+        +
Sbjct: 133 ASAKQAPRFPSTLSEAQVEALLAAPDVDTPLGLRDRTMLELMYASGLRVSELVTLKTVEV 192

Query: 218 QNNIFSIKTQKTGTIITV---------ELPDGFMKLLAMT--PIGKETFFINNDKQKMNA 266
             N   ++    G+   +          +                 +  F+      M  
Sbjct: 193 GLNEGVVRVTGKGSKERLVPFGEVAHGWIERYLRDARPALLGARAADALFVTARGDGMTR 252

Query: 267 TQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            QF    K  A +A V  + S H +R   AT   + GA    +    G   +   + YT 
Sbjct: 253 QQFWNIIKRHAQQADVRVHLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTH 312

Query: 325 GADRIRL 331
            A R RL
Sbjct: 313 VA-RERL 318


>gi|254451180|ref|ZP_05064617.1| tyrosine recombinase XerD [Octadecabacter antarcticus 238]
 gi|198265586|gb|EDY89856.1| tyrosine recombinase XerD [Octadecabacter antarcticus 238]
          Length = 313

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 47/284 (16%), Positives = 95/284 (33%), Gaps = 28/284 (9%)

Query: 74  LISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV---ESRKHT 129
            I  + ++ A     A N+++++            D  +  +   H+   +   +++   
Sbjct: 11  WIQAFLEAQAAELDAATNTQLAYARDLMDFSDWLADTHFAAVAQDHVEKYLIWCDAQGLA 70

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            ++  + L++++ LF++A  + +   NP + +  P R     +  +  ++    +   + 
Sbjct: 71  KATRARRLSAIKQLFRFAFEEGWRVDNPAIQISGPGRDKRLPKTLSHSEVDALLNAARDA 130

Query: 190 SQPRLA----FEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKL 244
            +  L      E L  +G+R ++     V   + +    +   K      V L       
Sbjct: 131 KKDPLRTTCLMELLYATGMRVTELVSLPVSAARGDPRMLLVRGKGDKERMVPLSPPARAA 190

Query: 245 LAM----------------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--- 285
            A+                TP  K  F        +    F    K  AT  GV +S   
Sbjct: 191 TAVWLKTRDKAEDATFKDGTPRSKFLFPSRGKLGHLTRQSFFNLIKDLATAGGVTRSKVT 250

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            H +R   AT   + GA    +    G   V   E YT   D  
Sbjct: 251 PHTLRHAFATHLLEGGADLRSIQTLLGHVDVATTEIYTHVLDER 294


>gi|27363993|ref|NP_759521.1| site-specific tyrosine recombinase XerD [Vibrio vulnificus CMCP6]
 gi|161486657|ref|NP_933458.2| site-specific tyrosine recombinase XerD [Vibrio vulnificus YJ016]
 gi|320157372|ref|YP_004189751.1| tyrosine recombinase XerD [Vibrio vulnificus MO6-24/O]
 gi|34222790|sp|Q7ZAJ0|XERD_VIBVU RecName: Full=Tyrosine recombinase xerD
 gi|71153415|sp|Q7MNQ0|XERD_VIBVY RecName: Full=Tyrosine recombinase xerD
 gi|27360110|gb|AAO09048.1| tyrosine recombinase XerD [Vibrio vulnificus CMCP6]
 gi|319932684|gb|ADV87548.1| tyrosine recombinase XerD [Vibrio vulnificus MO6-24/O]
          Length = 305

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 45/265 (16%), Positives = 98/265 (36%), Gaps = 23/265 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVESRKHTPSSAIQFLTS 139
             LA N+  S+ +   ++++      YR         +  +S +  + +  +S  + L++
Sbjct: 26  RGLAENTLASYRNDLMKLLQWMEANHYRLDFISLSGLQQYQSYLVDQDYKQTSRARMLSA 85

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195
           +R LF++  R++  A +P   +  PK      +  ++E +               + +  
Sbjct: 86  IRRLFQYLHREKVRADDPSALLVSPKLPQRLPKDISEEQVDALLDAPDPNDPVELRDKAM 145

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAMTP----- 249
            E L  +GLR ++     ++++      ++ T K G    V + +  +  +         
Sbjct: 146 LELLYATGLRVTELVSLTMENISLRQGVVRVTGKGGKERLVPMGENAIDWIETFIKQGRP 205

Query: 250 -----IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG 301
                   +  F +   ++M    F    K  A  AG++    S H +R   AT   + G
Sbjct: 206 ALLGETSSDVVFPSKRARQMTRQTFWHRIKFYAVIAGIDTDHLSPHVLRHAFATHLLNYG 265

Query: 302 ATAHELMATYGWKTVDQAETYTKGA 326
           A    +    G   +   + YT  A
Sbjct: 266 ADLRVVQMLLGHSDLSTTQIYTHVA 290


>gi|325280456|ref|YP_004252998.1| Tyrosine recombinase xerC [Odoribacter splanchnicus DSM 20712]
 gi|324312265|gb|ADY32818.1| Tyrosine recombinase xerC [Odoribacter splanchnicus DSM 20712]
          Length = 307

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 52/284 (18%), Positives = 102/284 (35%), Gaps = 26/284 (9%)

Query: 70  TLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVE 124
           T +  I  Y+       SL+ NS  ++ +   ++ +   D         I+  H++  + 
Sbjct: 2   TWEDAIESYKTYLILEKSLSSNSVEAYLNDIKKLAKYCADKHHVTTPDAISYDHLKDYLM 61

Query: 125 ---SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
                  T  +  + ++S+R  +K+ V    +  NP   +E PK   +     T E++  
Sbjct: 62  FINEVGVTNRTQARCISSIRSFYKFLVFDGQLENNPTKLLEAPKIGRKLPNILTTEEIDA 121

Query: 182 FKS----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVE 236
             +    +  E  + +   E L   GLR S+     + ++      +K +  G     + 
Sbjct: 122 MLNSVEMYKPEAQRNKAIIEMLYSCGLRVSELISIKLSNINFRQGIVKIEGKGNKERMIP 181

Query: 237 LPDG-----------FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284
           L              +   L +    ++  F+N     ++        K  AT+AG+ K 
Sbjct: 182 LSKNAKQEIKQYMKVYRDYLEIEKGYEDVLFLNKRGTALSRVMVFNIIKHLATRAGIKKN 241

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
            S H  R   A+     GA    +    G +++   E YT   D
Sbjct: 242 VSPHTFRHSFASHLVSGGADLRAVQDMLGHESILTTEIYTHLDD 285


>gi|298528177|ref|ZP_07015581.1| tyrosine recombinase XerD [Desulfonatronospira thiodismutans
           ASO3-1]
 gi|298511829|gb|EFI35731.1| tyrosine recombinase XerD [Desulfonatronospira thiodismutans
           ASO3-1]
          Length = 310

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 49/269 (18%), Positives = 87/269 (32%), Gaps = 21/269 (7%)

Query: 85  GSLAVNSRISF----ESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP-SSAIQFLTS 139
             LA  +  ++     ++ + +  K  D          +      RK     S  + + S
Sbjct: 22  KGLAHQTVAAYTEDLSTFLEFLQEKGKDVLDINDQVLLVYLMFLRRKGLQSRSLARHMAS 81

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195
           +R  + +   Q  +  NP   +E PK      R  +  +++   S        G++ +  
Sbjct: 82  LRGFYAYLHEQGLLKDNPAEMLENPKLPQLLPRVLSIPEVESILSQPSTGDKLGARDKTM 141

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-ITVELPDG--------FMKLLA 246
            E L  +GLR S+     V         I+    G     V L                +
Sbjct: 142 LEMLYAAGLRVSELINLKVLDFDPQAGIIRVWGKGARERLVPLHFSCMQWLDFYLQHWRS 201

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATA 304
                 +  FIN   + ++        K     AG+ K  S H +R   AT   + GA  
Sbjct: 202 SFSPRVDKVFINRSGKALSRQGVWKIIKKYTVMAGIKKDVSPHTLRHSFATHLLEGGADL 261

Query: 305 HELMATYGWKTVDQAETYTK-GADRIRLG 332
             +    G   +   E YT   +DR++  
Sbjct: 262 RTVQVLLGHSDITATEIYTHVQSDRLKSA 290


>gi|300690586|ref|YP_003751581.1| site-specific tyrosine recombinase [Ralstonia solanacearum PSI07]
 gi|299077646|emb|CBJ50282.1| site-specific tyrosine recombinase [Ralstonia solanacearum PSI07]
          Length = 308

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 50/297 (16%), Positives = 92/297 (30%), Gaps = 20/297 (6%)

Query: 54  STPKREYINSPRKKPTTLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYR 112
           +    E +   R    T++      + +     +     R     Y   +  +    D  
Sbjct: 2   TKAAPEVLAPARLSAETIQRFCDALWLEDGLARNTLDAYRRDLTLYAQWLAERGKAIDQT 61

Query: 113 KITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
           +             +   SSA +  T  +  F+WA+R+  ++ +P   +   K+     +
Sbjct: 62  EDGDLADYFAARHAESRASSANRRRTVFKRFFQWALREHVISADPSRLLSTAKQPPRIPK 121

Query: 173 PWTKEDMQQFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-- 226
             ++  ++   +        G + R   E +  SGLR S+        +  N   ++   
Sbjct: 122 TLSEAQVEALIAAPDIDTPLGLRDRAMIELMYASGLRVSEIVALKTVEVGLNEGVVRVVS 181

Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKET----------FFINNDKQKMNATQFSIWFKAK 276
            K G    V         L        T           F+      M    F    K  
Sbjct: 182 GKGGKDRLVPFGAEAGDWLRRYLRDGRTALLGERTADALFVTARGDGMTRQAFWHLIKRY 241

Query: 277 ATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           A +A ++   S H +R   AT   + GA    +    G   +   + YT  A R RL
Sbjct: 242 ALRADLHAPLSPHTLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVA-RERL 297


>gi|229015245|ref|ZP_04172280.1| hypothetical protein bmyco0001_55910 [Bacillus mycoides DSM 2048]
 gi|228746047|gb|EEL96015.1| hypothetical protein bmyco0001_55910 [Bacillus mycoides DSM 2048]
          Length = 280

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 44/271 (16%), Positives = 100/271 (36%), Gaps = 12/271 (4%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-- 128
           L      Y+        +  +  ++   ++ ++R  GD +  + TT+ ++  +       
Sbjct: 3   LSEAWERYQLDKKIEGYSPLTLKTYCFQYNLLLRYFGDINMSEFTTEKLKGYLIEAGEHL 62

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
            PSS    +  ++ LF+W   + ++  NP   ++ PK   +  +  ++ +++  +     
Sbjct: 63  KPSSLGHRVRCIKSLFRWTHDEGFILKNPAAKLKEPKLGKKIPKFLSELEIEHLREAC-H 121

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-----ITVELPDGFMK 243
            S     FEFL  +G R  +  +     +  +  S+     G                 +
Sbjct: 122 NSMENALFEFLYSTGCRIGEVVKLNRVDINFSTNSVIVHGKGDKEREVYFNTRCTIWLKR 181

Query: 244 LLAMTPIGKETFFINND--KQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISAD 299
            L      +   FI     K++M+        K  + +A + KS   H +R   AT   +
Sbjct: 182 YLDERDDEEPCLFITERRPKRRMSIDNLRFIIKRISNRARIKKSIHPHQLRHSYATHMIN 241

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIR 330
            GA    + +  G +  +    Y + + ++R
Sbjct: 242 NGAPLEVIQSLLGHEKSETTRIYAQLSGKLR 272


>gi|124267211|ref|YP_001021215.1| tyrosine recombinase XerD subunit [Methylibium petroleiphilum PM1]
 gi|124259986|gb|ABM94980.1| tyrosine recombinase XerD subunit [Methylibium petroleiphilum PM1]
          Length = 309

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 56/306 (18%), Positives = 101/306 (33%), Gaps = 26/306 (8%)

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR---KSGDFD 110
           + P  E    P      +   +           L+ N+  ++        R    +    
Sbjct: 3   AEPHDELPPLPADSAVAIDAFLEALWVED---GLSDNTLAAYRRDLTLYARWLVHASGKP 59

Query: 111 YRKITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168
                   +R+    R      +SA + LT  R  F+WA+R+  ++ +P L +   K+  
Sbjct: 60  LDGSGEADLRAYALERHAGTRATSANRRLTVFRRYFRWALREHRLSADPTLKLLAAKQPL 119

Query: 169 EGIRPWTKEDMQQFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
              +  ++  ++            G + R   E L  SGLR S+       ++  +  ++
Sbjct: 120 RVPKTLSEAQVEALLEAPDVDTPLGLRDRAMLEILYASGLRVSELVTLKSVNVGYSEAAL 179

Query: 225 K-TQKTGTIITVELPDG--------FMKLLAMTPIGK--ETFFINNDKQKMNATQFSIWF 273
           + T K      V   +           +  A    G+  +  F+      M    F    
Sbjct: 180 RVTGKGSKERLVPFGEEAHGWLMRYLAEARAAILGGQASDALFVTARGGPMTRQAFWQLI 239

Query: 274 KAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           K  A  AG+    S H +R   AT   + GA    +    G   +     YT  A R RL
Sbjct: 240 KRHAGAAGIQVPLSPHTLRHAFATHLLNHGADLRAVQMLLGHADISTTTIYTHVA-RERL 298

Query: 332 GIKNSR 337
              +S+
Sbjct: 299 KQLHSQ 304


>gi|212550679|ref|YP_002308996.1| site-specific recombinase XerD [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|212548917|dbj|BAG83585.1| site-specific recombinase XerD [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 299

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 48/277 (17%), Positives = 95/277 (34%), Gaps = 25/277 (9%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVE---S 125
             LI  YR       +L+ NS  ++ S  +++++       D   +    ++        
Sbjct: 4   SSLIKSYRMYLLLEKALSHNSVNAYMSDLEKLLKYLDSIGKDLLNVELSDLQKMFTTLCE 63

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
               P S  + ++ ++  + +   ++ +  NP   +E PK   +     T  ++    + 
Sbjct: 64  MGIHPRSQARIISGIKSFYYFLELEDQITNNPTEYLESPKVGRKLPEFLTVNEINSIIAT 123

Query: 186 W----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPD 239
                  G + R   E L   GLR S+  +              I   K      V + +
Sbjct: 124 IDLSKPNGQRNRAIIETLYSCGLRISELVKLSFSDFFPDEGFLKIN-GKGNKQRIVPISN 182

Query: 240 GFMKLLAMTPIGKET----------FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287
             +K + +  I ++            F+N    +++        K    +AG+ K  S H
Sbjct: 183 SAIKEIQLYLIDRQRSSIEKEFENIIFLNRRGTRLSRVMVFYLVKGCTVQAGIKKNVSPH 242

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             R   AT   + GA    + A  G + +   E YT 
Sbjct: 243 TFRHSFATHLLEGGANLRAIQAMLGHENITTTEIYTH 279


>gi|306836032|ref|ZP_07469022.1| tyrosine recombinase XerD [Corynebacterium accolens ATCC 49726]
 gi|304568059|gb|EFM43634.1| tyrosine recombinase XerD [Corynebacterium accolens ATCC 49726]
          Length = 296

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 48/261 (18%), Positives = 90/261 (34%), Gaps = 22/261 (8%)

Query: 90  NSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS--SAIQFLTSMRVLFKWA 147
           N R     Y D +    G  D R++T   + + ++  +   +  SA + L   R L K+A
Sbjct: 28  NYRRDIRRYVDWLADN-GVQDLRQVTRPMVEAYLKDLREKMAVSSANRALIVARGLHKFA 86

Query: 148 VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSG 203
           V +  V  +    V  P          + +++ +        +    + R   E L  +G
Sbjct: 87  VAEGEVDSDVAAEVSPPSTGQHLPETLSVDEVSRLIESTPTETPVDLRDRALLEVLYGTG 146

Query: 204 LRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAM---------TPIGK 252
            R S+     V  +   +++  +   K      V L     + +                
Sbjct: 147 ARISEVISLNVDDVATADDVLMLH-GKGDKERLVPLGSHARQAIDAYLVRARPVLGKGKT 205

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMAT 310
              F+N     ++        K  A ++ ++KS   H +R   AT   + GA    +   
Sbjct: 206 AALFLNTRGGALSRQSAWSIIKTAAQRSQLDKSISPHTLRHSFATHLLEGGADVRTVQEL 265

Query: 311 YGWKTVDQAETYTK-GADRIR 330
            G  +V   + YT   AD +R
Sbjct: 266 LGHSSVTTTQIYTHVTADSLR 286


>gi|91226786|ref|ZP_01261439.1| tyrosine recombinase [Vibrio alginolyticus 12G01]
 gi|269964519|ref|ZP_06178759.1| tyrosine recombinase [Vibrio alginolyticus 40B]
 gi|91188917|gb|EAS75201.1| tyrosine recombinase [Vibrio alginolyticus 12G01]
 gi|269830756|gb|EEZ84975.1| tyrosine recombinase [Vibrio alginolyticus 40B]
          Length = 305

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 47/278 (16%), Positives = 102/278 (36%), Gaps = 26/278 (9%)

Query: 74  LISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVESR 126
           L+ ++   A W    L+ N+  S+ +   +++       YR         +  +S +   
Sbjct: 14  LVEQFL-DAMWMERGLSENTLASYRNDLMKLLVWMEKHRYRLDFISLSGLQEYQSHLVDL 72

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185
            +  +S  + L+++R LF++  R++  A +P   +  PK      +  ++E +       
Sbjct: 73  DYKQTSRARMLSAIRRLFQYLHREKVRADDPSALLVSPKLPQRLPKDISEEQVDALLEAP 132

Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGF 241
                   + +   E L  +GLR ++     ++++      ++ T K G    V + +  
Sbjct: 133 DPNDPIELRDKAMLELLYATGLRVTELVSLTMENVSLRQGVVRVTGKGGKERLVPMGENA 192

Query: 242 MKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288
           +  +                 +  F +   ++M    F    K  A  AG++    S H 
Sbjct: 193 VDWIETFIQQGRPALLGDTSSDIVFPSKRARQMTRQTFWHRIKYYALIAGIDTDQLSPHV 252

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           +R   AT   + GA    +    G   +   + YT  A
Sbjct: 253 LRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVA 290


>gi|305667659|ref|YP_003863946.1| putative tyrosine recombinase [Maribacter sp. HTCC2170]
 gi|88709709|gb|EAR01942.1| putative tyrosine recombinase [Maribacter sp. HTCC2170]
          Length = 298

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 49/278 (17%), Positives = 96/278 (34%), Gaps = 27/278 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESRKHT--PSSAIQFLT 138
             L+ NS  ++    ++++      D      KI  + +++ +     T  P S  + ++
Sbjct: 18  RGLSDNSIKNYVWDVEKLVGFLDVNDMVISPIKIDKETVQAFIYEIAKTINPRSQARIIS 77

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRL 194
            ++  F +   ++Y   NP   +E PK   +     +++++ Q          EG + R 
Sbjct: 78  GLKSFFNYLNFEDYRQDNPMDLLESPKIGRKLPDTLSEDEINQLIDAIDLSKPEGERNRA 137

Query: 195 AFEFLLYSGLRCSDSCRAGVQH--LQNNIFSIKTQKTGTIITVELPD-----------GF 241
             E L   GLR S+     +     + +   + T K      V + D             
Sbjct: 138 MLETLYGCGLRVSELIGLKISDLFFEEDFIKV-TGKGNKQRFVPISDFNKKYINIYRKEI 196

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISAD 299
                +     +  F+N   +++         K  A K  + KS   H  R   AT    
Sbjct: 197 RVHQKIQKGFDDILFLNRRGKQLTRAMIFTIIKQLAVKIDLGKSISPHTFRHSFATHLLQ 256

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
            GA    +    G +++   E Y    DR  L    ++
Sbjct: 257 NGADLRAIQQMLGHESITTTEVYMH-VDRTHLADVMNK 293


>gi|74318396|ref|YP_316136.1| tyrosine recombinase XerD [Thiobacillus denitrificans ATCC 25259]
 gi|74057891|gb|AAZ98331.1| tyrosine recombinase XerD [Thiobacillus denitrificans ATCC 25259]
          Length = 296

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 51/285 (17%), Positives = 101/285 (35%), Gaps = 27/285 (9%)

Query: 72  KWLISEYRKSAHWGS-LAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVE 124
             LI  +         LA  +  ++                R +        +       
Sbjct: 3   DALIDRFCDHLWLEDGLAELTLAAYRRDLRSFAGWLDKTRARSLDAVAPGDVEAYLGWRF 62

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
           +    P SA ++ ++++  +++ +R+  +A +P L+++RPK         ++ D+++   
Sbjct: 63  AHHVGPRSAARYTSALKRFYRYLLRENLIAADPTLNLDRPKLPRALPASLSETDVERLLE 122

Query: 185 FW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELP 238
                  +G + R   E L  +GLR S+     +   +L + +  + T K      V L 
Sbjct: 123 RADSDTPQGLRDRAMLETLYATGLRVSELVGLKLNALNLDDGVLRV-TGKGNKDRLVPLG 181

Query: 239 DGFMKLLAMTPIGK----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286
           +  ++ L                 +  F+      M    F    K +A  AGV +  S 
Sbjct: 182 EEAVRRLRHYLAEARSQLLRRQVSDAVFVTPRGAAMTRQAFWYLIKRRAAAAGVTRQLSP 241

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           H +R   AT   + GA    +    G   +   + YT  A R R+
Sbjct: 242 HTLRHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTHVA-RERM 285


>gi|308174137|ref|YP_003920842.1| site-specific tyrosine recombinase [Bacillus amyloliquefaciens DSM
           7]
 gi|307607001|emb|CBI43372.1| site-specific tyrosine recombinase for chromosome partitioning
           [Bacillus amyloliquefaciens DSM 7]
 gi|328554079|gb|AEB24571.1| site-specific tyrosine recombinase XerD [Bacillus amyloliquefaciens
           TA208]
 gi|328912472|gb|AEB64068.1| site-specific tyrosine recombinase for chromosome partitioning
           [Bacillus amyloliquefaciens LL3]
          Length = 296

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 46/271 (16%), Positives = 101/271 (37%), Gaps = 25/271 (9%)

Query: 85  GSLAVNSRISFESYFDQ----IIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI---QFL 137
             L+ N+ +S+E         +        +  +T  HI   ++  K +  S     + L
Sbjct: 16  RGLSQNTMMSYERDLKSYSLFLTETLQITSWNDVTRLHIIQYLKHLKDSGKSGKTSARHL 75

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPR 193
            S+R   ++ +R++    +P + +E  K +    +    +++++           G + +
Sbjct: 76  ASIRSFHQFLLREKAADKDPSVHIETQKTERALPKVLALQEVERLLDTPKLDSPFGLRDK 135

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM---TP 249
              E L  +G+R S+     +  +   +  ++   K      V + +     +       
Sbjct: 136 AMLELLYATGIRVSEMIELKLSDVHLTMGFVRCFGKGRKERIVPIGEAASHAIEAYIEKA 195

Query: 250 IGK-------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
            GK       E  F+N+  ++++   F    K  A +AG+ K  + H +R   AT   + 
Sbjct: 196 RGKLLKKNVTEALFLNHHGRQISRQGFWKNLKKIALEAGIKKELTPHTLRHSFATHLLEN 255

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRL 331
           GA    +    G   +   + YT    + RL
Sbjct: 256 GADLRAVQEMLGHADISTTQIYTH-VSKTRL 285


>gi|237729834|ref|ZP_04560315.1| site-specific tyrosine recombinase XerD [Citrobacter sp. 30_2]
 gi|226908440|gb|EEH94358.1| site-specific tyrosine recombinase XerD [Citrobacter sp. 30_2]
          Length = 298

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 42/265 (15%), Positives = 89/265 (33%), Gaps = 23/265 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDF-----DYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
            +LA N+  ++      ++             +    + + +      +  +S+ + L++
Sbjct: 19  RNLAENTLSAYRRDLTMLVEWLHHRGASLATAQSDDLQALLAERMDGGYKATSSARLLSA 78

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195
            R  F+   R++Y   +P  S+  PK      +  ++  +++             + +  
Sbjct: 79  TRRFFQHLYREKYREDDPSASLASPKLPQRLPKDLSEAQVERLLQAPLIEQPLELRDKAM 138

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKET 254
            E L  +GLR S+     +  +      ++   K      V L +  +  L         
Sbjct: 139 LEVLYATGLRVSELVGLTMSDVSLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRP 198

Query: 255 FFIN----------NDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG 301
           + +N             Q+M    F    K  A  AG++    S H +R   AT   + G
Sbjct: 199 WLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHG 258

Query: 302 ATAHELMATYGWKTVDQAETYTKGA 326
           A    +    G   +   + YT  A
Sbjct: 259 ADLRVVQMLLGHSDLSTTQIYTHVA 283


>gi|218706400|ref|YP_002413919.1| site-specific tyrosine recombinase XerD [Escherichia coli UMN026]
 gi|293406393|ref|ZP_06650319.1| xerD [Escherichia coli FVEC1412]
 gi|298382129|ref|ZP_06991726.1| tyrosine recombinase xerD [Escherichia coli FVEC1302]
 gi|300896210|ref|ZP_07114759.1| tyrosine recombinase XerD [Escherichia coli MS 198-1]
 gi|301027413|ref|ZP_07190750.1| tyrosine recombinase XerD [Escherichia coli MS 69-1]
 gi|218433497|emb|CAR14400.1| site-specific tyrosine recombinase [Escherichia coli UMN026]
 gi|291426399|gb|EFE99431.1| xerD [Escherichia coli FVEC1412]
 gi|298277269|gb|EFI18785.1| tyrosine recombinase xerD [Escherichia coli FVEC1302]
 gi|300359944|gb|EFJ75814.1| tyrosine recombinase XerD [Escherichia coli MS 198-1]
 gi|300394921|gb|EFJ78459.1| tyrosine recombinase XerD [Escherichia coli MS 69-1]
          Length = 298

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 43/270 (15%), Positives = 95/270 (35%), Gaps = 24/270 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
            +LA N+  ++      ++             +    + + +      +  +S+ + L++
Sbjct: 19  KNLAENTLNAYRRDLSMMVEWLHHRGSTLATAQSDDLQALLAERLEGGYKATSSARLLSA 78

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195
           +R LF++  R+++   +P   +  PK      +  ++  +++             + +  
Sbjct: 79  VRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLIDQPLELRDKAM 138

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKET 254
            E L  +GLR S+     +  +      ++   K      V L +  +  L         
Sbjct: 139 LEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRP 198

Query: 255 FFIN----------NDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG 301
           + +N             Q+M    F    K  A  AG++    S H +R   AT   + G
Sbjct: 199 WLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHG 258

Query: 302 ATAHELMATYGWKTVDQAETYTKGA-DRIR 330
           A    +    G   +   + YT  A +R+R
Sbjct: 259 ADLRVVQMLLGHSDLSTTQIYTHVATERLR 288


>gi|78357014|ref|YP_388463.1| tyrosine recombinase XerD subunit [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|78219419|gb|ABB38768.1| tyrosine recombinase XerD subunit [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 309

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 43/260 (16%), Positives = 83/260 (31%), Gaps = 20/260 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDF-----DYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
             L+ N+  S+ +     +           D    +       +  R  +  S  + L +
Sbjct: 29  RGLSENTLSSYGTDLQSFLDFLHHKKSRLEDVTDQSLLLYIMHLRRRGLSSKSLARQLAA 88

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FWSEGSQPRLA 195
           +R LF++   Q  ++ NPC  +E PK         +++++ +  +        G + R  
Sbjct: 89  LRGLFRYGTEQNLLSENPCRFLENPKIPKSLPEYLSQQEIAEVLAQPDLKEKLGFRDRTM 148

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG--------FMKLLA 246
            E L  +GLR S+               ++   K     TV +                 
Sbjct: 149 LELLYAAGLRVSELITLKPLDFDPLTGLVRVFGKGAKERTVPVHATAARFLGAYLRDWRP 208

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATA 304
                +   F+N   + +         +     AG+++  S H  R   AT   + GA  
Sbjct: 209 AFKPVENILFLNRSGKGLTRQAVWKIVRRHVADAGIHRQISPHTFRHSFATHLLEGGADL 268

Query: 305 HELMATYGWKTVDQAETYTK 324
             +    G   +   E YT 
Sbjct: 269 RTVQLLLGHADIAATEIYTH 288


>gi|223041687|ref|ZP_03611883.1| site-specific recombinase XerD [Actinobacillus minor 202]
 gi|223017496|gb|EEF15911.1| site-specific recombinase XerD [Actinobacillus minor 202]
          Length = 301

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 46/289 (15%), Positives = 95/289 (32%), Gaps = 24/289 (8%)

Query: 66  KKPTTLKWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH----IR 120
           K   +L  ++ ++  +      L+ N+  S+       +    +         H      
Sbjct: 3   KSAPSLDPIVEQFLDTLWQEHGLSDNTVSSYRLDLILFMEWLDESRAFLTIDHHALQEFL 62

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                + +  SS+++ L+ +R  F++   + Y   +P   +  P++ +   +   +E + 
Sbjct: 63  GYRFDQGYKASSSLRMLSCLRKFFRFLYLENYRKDDPTAMLVAPRKPSRLPKTLNEEQVM 122

Query: 181 QFKS----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITV 235
                         + +   E L  +GLR ++      ++L      ++   K      V
Sbjct: 123 DLLDCPNPLDPIELRDKAMLELLYATGLRVTELISLTTENLSLRQGVVRIIGKGDKERLV 182

Query: 236 ELPDGFMKLLAMTPIGKETFFINN----------DKQKMNATQFSIWFKAKATKAGVN-- 283
            L +     +           +NN            Q M    F    K  A  AG++  
Sbjct: 183 PLGEEASYWIQEFFQYGRGILLNNEPSSIVFPSKRGQMMTRQTFWHRIKHYAVLAGIDSE 242

Query: 284 -KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
             S H +R   AT   + GA    +    G   +   + YT  A + RL
Sbjct: 243 KLSPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVA-KARL 290


>gi|238920128|ref|YP_002933643.1| site-specific recombinase, phage integrase family [Edwardsiella
           ictaluri 93-146]
 gi|238869697|gb|ACR69408.1| site-specific recombinase, phage integrase family [Edwardsiella
           ictaluri 93-146]
          Length = 336

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 65/334 (19%), Positives = 112/334 (33%), Gaps = 35/334 (10%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
           +PP V       G+  Y F   +G  IRL     +       +A      +R        
Sbjct: 13  MPPRVYM-----GRSAYEFHPINGGNIRLCDKTATQ--AQVWAAWEALINERPD------ 59

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
             TTL  L+  + KSA +  LAV ++  +  Y  +I+   G      I  +H+R  ++ R
Sbjct: 60  -TTTLAGLVERFLKSADFFGLAVETQKDYHKYSQKILSVFGKMPPDAIRPEHVRRYMDKR 118

Query: 127 KHTPSS-AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
                + A +  + M  +++WA  + YV  NP   V + K      R  T ++       
Sbjct: 119 GLRSHTQANREKSFMSRVYRWAYERGYVKGNPTKGVRQFKEPGR-DRYITHQEYLALYGV 177

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
            S+    R+A E       R  D               IK  KT             + +
Sbjct: 178 TSD--VVRVAMELAYLCCARQKDVLNMMKSQFLPEGILIKQSKTAVGQIKAWSPRLREAI 235

Query: 246 AMTPI-----GKETFFI--NNDKQKMNATQFSIWFKAKATKAG-------VNKSAHGVRK 291
            +        G+ T ++       K +   F+  ++     A         N + H ++ 
Sbjct: 236 KLASTLPLDSGRSTLYVIHQRSGDKYSRHGFNSRWRQAKKAAKKRYPELDFNFTFHDLKA 295

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKG 325
              +         +E  A  G K V+Q   Y + 
Sbjct: 296 KGISDLK---GNIYEKQAISGHKNVEQTARYNRK 326


>gi|283798528|ref|ZP_06347681.1| integrase/recombinase XerD [Clostridium sp. M62/1]
 gi|291073790|gb|EFE11154.1| integrase/recombinase XerD [Clostridium sp. M62/1]
 gi|295090134|emb|CBK76241.1| tyrosine recombinase XerD subunit [Clostridium cf. saccharolyticum
           K10]
          Length = 287

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 44/263 (16%), Positives = 89/263 (33%), Gaps = 22/263 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDF------DYRKITTKHIRSGVESRKHTPSSAIQFLT 138
             ++ N+ +S+     Q      D          K +       +E      ++  + L 
Sbjct: 16  KKMSQNTILSYRRDLLQFASYMADRGVAEAGKVTKTSLDSYILFLEREGKAAATISRMLA 75

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FWSEGSQPRL 194
           S++  F +   + Y+  NP   +  PK + +     + E++ +  +       +  + + 
Sbjct: 76  SIKAFFHYESTEGYIKRNPAEMIRAPKIEKKAPSILSVEEVTRLLNQPGGRTPKEIRDKA 135

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE--------LPDGFMKLLA 246
             E L  +G+R S+     + H+   I  I    +G   T+         L D       
Sbjct: 136 MLELLYATGIRVSELMNLNLHHINMTIGFITCSDSGRERTIPFGRVAKKALDDYLKNSRP 195

Query: 247 MTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGA 302
                KE+   F+N    +M+   F    K    KAG+  + + H +R   A     +GA
Sbjct: 196 ELTKKKESDWLFVNCSGGQMSRQGFWKIIKYYGEKAGIQTDITPHTLRHSFAAHLISSGA 255

Query: 303 TAHELMATYGWKTVDQAETYTKG 325
               +    G   +   + Y   
Sbjct: 256 DMKAVQQILGHSDMATTQMYAAY 278


>gi|167041136|gb|ABZ05896.1| putative Phage integrase family protein [uncultured marine
           microorganism HF4000_001A02]
          Length = 298

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 49/265 (18%), Positives = 91/265 (34%), Gaps = 25/265 (9%)

Query: 85  GSLAVNSRISFESYFD----QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF---L 137
            +LA NS  S+E         +  +      R +T  HIRS V    +   +A      +
Sbjct: 16  RNLARNSLESYERDLQQYHQYLKTELKLKTIRNVTLGHIRSFVRKLSNRGLAANSIKRAV 75

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPR 193
           +S+R    +   + ++  NP   ++ PK   +     T +++ +      E +    +  
Sbjct: 76  SSIRTYHNFLSAEGHMKDNPAQLLDTPKIPRKLPNVLTIQEIDKILGIIPENAPMAQRDL 135

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLL------- 245
             FE +   GLR ++ C      +  ++       K      V +     + L       
Sbjct: 136 AIFEMMYSCGLRVTELCDFKTSDILWDSEMIRVQGKGSKQRFVPIGPIARENLKNYLNHE 195

Query: 246 AMTPIGKET----FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
             T   K       F++ + +K+      +  K     A V K  S H +R   AT   +
Sbjct: 196 RNTLADKNPNVAEVFLSRNGRKLTRMMIWVLLKKWTESAEVKKEVSPHTLRHSFATHLLE 255

Query: 300 AGATAHELMATYGWKTVDQAETYTK 324
            GA    +    G   +   + YT 
Sbjct: 256 GGADLRSVQEMLGHTDITTTQVYTH 280


>gi|52424801|ref|YP_087938.1| site-specific tyrosine recombinase XerD [Mannheimia
           succiniciproducens MBEL55E]
 gi|52306853|gb|AAU37353.1| XerC protein [Mannheimia succiniciproducens MBEL55E]
          Length = 298

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 46/285 (16%), Positives = 99/285 (34%), Gaps = 27/285 (9%)

Query: 72  KWLISEYRKSAHW--GSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVESR- 126
             LI  +     W    L+ N+  S+      + +  +        + +  +++ +  R 
Sbjct: 5   SALIELFLNEL-WLGKGLSDNTVQSYRLDLTALSQWLQGQGKSLETLDSSDLQAFLGERV 63

Query: 127 --KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----Q 180
              +  +S  + L++MR LF++  ++ Y   +P   +  PK      +  T++ +     
Sbjct: 64  DQGYKATSTARMLSAMRKLFQYLYQESYRTDDPSAILSSPKLPGRLPKYLTEQQVGDLLN 123

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPD 239
              +      + +   E L  +GLR ++       ++      ++   K      V + +
Sbjct: 124 APSTDIPLELRDKAMLELLYATGLRVTELVTLSTDNINLEQGVVRVIGKGNKERIVPMGE 183

Query: 240 GF-----MKLLAMTPI-----GKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSA 286
                    +L   P+       +  F +    +M    F    K  A  A ++    S 
Sbjct: 184 EASYWVGQFILYGRPMLLNGQSSDVIFPSKRALQMTRQTFWHRIKHYAILADIDTDSLSP 243

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           H +R   AT   + GA    +    G   +   + YT  A + RL
Sbjct: 244 HVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVA-KERL 287


>gi|221211426|ref|ZP_03584405.1| tyrosine recombinase XerD [Burkholderia multivorans CGD1]
 gi|221168787|gb|EEE01255.1| tyrosine recombinase XerD [Burkholderia multivorans CGD1]
          Length = 316

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 49/268 (18%), Positives = 90/268 (33%), Gaps = 22/268 (8%)

Query: 85  GSLAVNSRISFES---YFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSSAIQFLTSM 140
             LA N+  ++      F Q +  + D          +   + +R     +S+ + L+  
Sbjct: 39  HGLARNTLDAYRRDLTLFSQWLAATHDAALDAADETMLTGYIAARSDGKATSSNRRLSVF 98

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAF 196
           R  + WAVR+   + +P L +   K+        ++  ++            G + R   
Sbjct: 99  RRYYGWAVREHRASADPTLRIASAKQAARFPSTLSEAQVEALLGAPDIATPLGLRDRTML 158

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLLAM 247
           E +  SGLR S+        +  N   ++    G+   +          +     +    
Sbjct: 159 ELMYASGLRVSELVTLKTVEVGLNEGVVRVMGKGSKERLVPFGEVAHGWIERYLREARPA 218

Query: 248 T--PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGAT 303
                  +  F+      M   QF    K  A +A V  + S H +R   AT   + GA 
Sbjct: 219 LLGARAADALFVTARGDGMTRQQFWNIIKRHAQQADVRAHLSPHTLRHAFATHLLNHGAD 278

Query: 304 AHELMATYGWKTVDQAETYTKGADRIRL 331
              +    G   +   + YT  A R RL
Sbjct: 279 LRVVQLLLGHADISTTQIYTHVA-RERL 305


>gi|261856623|ref|YP_003263906.1| tyrosine recombinase XerD [Halothiobacillus neapolitanus c2]
 gi|261837092|gb|ACX96859.1| tyrosine recombinase XerD [Halothiobacillus neapolitanus c2]
          Length = 311

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 44/273 (16%), Positives = 86/273 (31%), Gaps = 22/273 (8%)

Query: 86  SLAVNSRISFES-----YFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSM 140
            L+ N++ ++ S       D         +        +     S   +  S  +  +S+
Sbjct: 34  GLSKNTQSAYRSDLRLAALDWQRAGLRLNEVSAEDLPRLLGERMSSGQSARSIARLRSSL 93

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAF 196
           +  F W  +Q     +P  ++  P+         ++ ++++  +        G + R   
Sbjct: 94  KRFFGWLRQQNLRTDDPTTALAAPRLPRALPYALSENEVERLLAAPDVSEPIGLRDRAML 153

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAMTPIGKET- 254
           E L  SGLR ++        +      ++ T K      V + D  +  L+       + 
Sbjct: 154 ELLYASGLRVTELIGLQFGQINLVQGVLRITGKGNKDRLVPIGDEAIVWLSRYLREARSG 213

Query: 255 ---------FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGAT 303
                     F+      M    F    K  A  AG+ +  S H +R   AT   + GA 
Sbjct: 214 LLGRRESANVFVTERGDGMTRQAFWYRIKHHALAAGLARLPSPHTLRHAFATHLLNHGAD 273

Query: 304 AHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
              L    G   +   + YT  A      +   
Sbjct: 274 LRVLQMLLGHADLSTTQIYTHVATTRLKALHAQ 306


>gi|206896382|ref|YP_002246413.1| tyrosine recombinase XerD [Coprothermobacter proteolyticus DSM
           5265]
 gi|206738999|gb|ACI18077.1| tyrosine recombinase XerD [Coprothermobacter proteolyticus DSM
           5265]
          Length = 288

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 57/278 (20%), Positives = 99/278 (35%), Gaps = 26/278 (9%)

Query: 59  EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH 118
           EY+    K P T+K  IS+  +   W   +                +       +I  + 
Sbjct: 7   EYLVKKGKSPHTIKNYISDLMQFQKWFEESTG-------------EQFSPGKITEIDVRS 53

Query: 119 IRSG-VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
            RS  +  R+  PSS  + L ++R    W V+Q+ ++ NP   VE P   T   R  +++
Sbjct: 54  YRSYLINIRQLKPSSIKRKLEAIRKFLDWTVKQDIISKNPAKEVEAPASVTLPPRSLSEK 113

Query: 178 DMQQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGT 231
           +  + +  + +    R    FE L  +G+R S+ C   +  +    +     ++  K   
Sbjct: 114 EFLRLRRSFYKEGNERDIAIFEVLANTGIRVSELCSLKLSDVQISERKGKLIVRYGKGQK 173

Query: 232 IITVELPDGFMKLL-----AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA 286
              V L     K L     +      E  F+      +  +      K  A  AGV  S 
Sbjct: 174 YREVPLNSDARKALNEYLKSRADENNERLFLGERG-PLTPSGVFRIIKRYARDAGVEVSP 232

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           H +R   A     +GA    +    G   ++    Y K
Sbjct: 233 HQLRHTFARRLLQSGADIVTVQQILGHANLNTTAVYLK 270


>gi|241766196|ref|ZP_04764098.1| tyrosine recombinase XerD [Acidovorax delafieldii 2AN]
 gi|241363726|gb|EER59095.1| tyrosine recombinase XerD [Acidovorax delafieldii 2AN]
          Length = 299

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 49/275 (17%), Positives = 99/275 (36%), Gaps = 24/275 (8%)

Query: 86  SLAVNSRISFESYFD----QIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTS 139
            LA N+  ++          + ++            H+++    R  +   +SA + LT 
Sbjct: 21  GLARNTLAAYRRDLTLYATWLAQQQPALALDSTAEHHLQAYFAERHAQTRATSANRRLTV 80

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLA 195
           +R  F WA+R+  ++ +P + ++  ++     +  ++  ++   +    GS    + R  
Sbjct: 81  LRRYFHWALRERRISADPTVRLQAARQPLRVPKTLSQAQVEALLNAPDVGSALGLRDRTM 140

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLLA 246
            E +  SGLR ++        L      ++    G+   +          +     +   
Sbjct: 141 LELMYASGLRVTELVTLKTYQLGLAEGVLRVMGKGSKERLVPFGEEARNWIERYLHEARG 200

Query: 247 MTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGA 302
               G++T   F+ +    M    F +  K  A  AG+    S H +R   AT   + GA
Sbjct: 201 AILGGQQTDDLFVTHRGAGMTRVMFWVIVKKWAAVAGITVPLSPHTLRHAFATHLLNHGA 260

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
               +    G   +     YT  A R RL   + R
Sbjct: 261 DLRVVQLLLGHVDISTTTIYTHVA-RERLKALHER 294


>gi|288553931|ref|YP_003425866.1| site-specific integrase [Bacillus pseudofirmus OF4]
 gi|288545091|gb|ADC48974.1| site-specific integrase [Bacillus pseudofirmus OF4]
          Length = 348

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 58/314 (18%), Positives = 104/314 (33%), Gaps = 40/314 (12%)

Query: 51  LTGSTPKREYINSP-RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF----DQIIRK 105
             G + K E      RK    L  L  +Y  S      A  +  S+   +    + +   
Sbjct: 4   RAGKSVKNERSGIEWRKSIYDLDALFEKYYDSKVAEGRAEGTLKSYRRVYGVFSEYLTNN 63

Query: 106 SGDFDYRKITTKHIRS----------GVESRKHTP----------SSAIQFLTSMRVLFK 145
               D R I T  +R             +  KH P           S    + +++  F 
Sbjct: 64  DVQLDIRAIETDTVRGFVAWLLRERIRWDGHKHKPEYVQTKGLSPRSVNDHIKTLKTFFS 123

Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KSFWSEGSQPRLAFEFLLY 201
           + V ++    NP   V++ ++  + I   T ++++              +  +   FLL 
Sbjct: 124 FLVDEDLADFNPVSKVKKVRQIEKEIDVLTVDELKALMSVPYHRKYADFRDYVIMTFLLD 183

Query: 202 SGLRCSDSCRAGVQHLQ--NNIFSIKTQ--KTGTIITVELPDGFMKLLAMTPI-----GK 252
           +  R ++ C    + +   +N   I+ +  KT     V       +LL            
Sbjct: 184 TMCRINEVCTLRKRDIDFKDNTVHIRAEITKTRKGRHVPFQKRTARLLKELIKEVDVFDS 243

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMAT 310
           E  F++N  +++    F    K  A KAG+ +    H  R   AT+  +AG     L   
Sbjct: 244 EYIFLSNYGEQLEPNHFRSRLKGFAKKAGIERNVHPHLFRHTGATMFLEAGGDIRHLQLI 303

Query: 311 YGWKTVDQAETYTK 324
            G   +     YT 
Sbjct: 304 LGHADLRMTTRYTH 317


>gi|33600646|ref|NP_888206.1| integrase [Bordetella bronchiseptica RB50]
 gi|33568246|emb|CAE32158.1| integrase [Bordetella bronchiseptica RB50]
          Length = 319

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 55/326 (16%), Positives = 107/326 (32%), Gaps = 35/326 (10%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
           +PP V ++   HG   YY + G   R+    P                T   EY      
Sbjct: 1   MPPCVYEK---HG-AYYYVKGGKWTRLAADLP----------------TALAEYARRFDN 40

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
               +  L+ +         L+ N+   ++    +I     +F   ++  KH+ +     
Sbjct: 41  PRGGMADLVEKVLTQVS-PKLSPNTIQQYKIAAARIKDAFAEFAPDQVRPKHVAALKVDM 99

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             TP+ A + L+ ++ +F +AV  + V  NPC+ ++R        R  T  +      + 
Sbjct: 100 ADTPNMANRVLSFLKTVFVYAVEWQLVDSNPCIGIKRHNEGKRK-RYITDAEYAAI--YH 156

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL-L 245
               + ++  + L  +G R  D        L  +    + +KTG  + V          +
Sbjct: 157 HANPRMQVIMDLLYLTGQRVGDVLAIKRSDLTEDGIVFEQEKTGAKLLVRWVPELRDAVV 216

Query: 246 AMTPIGKETF---FINNDKQKMNATQFSI---WFKAKATKAGV-NKSAHGVRKFSATISA 298
               +                  A  +      ++     AGV + + H +R  S T + 
Sbjct: 217 RANALNGNVLAPTLFRTRSHGKGAPSYGTTRDRWREAVEAAGVQDANIHDIRAKSLTDAK 276

Query: 299 DAGATAHELMATYGWKTVDQAETYTK 324
             G  A       G  +    + Y +
Sbjct: 277 RQGKDA---QLLAGHASPAMTDRYIR 299


>gi|206900840|ref|YP_002251182.1| tyrosine recombinase XerD [Dictyoglomus thermophilum H-6-12]
 gi|206739943|gb|ACI19001.1| tyrosine recombinase XerD [Dictyoglomus thermophilum H-6-12]
          Length = 296

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 43/264 (16%), Positives = 92/264 (34%), Gaps = 19/264 (7%)

Query: 85  GSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSM 140
            +++  +  S+    +  I   +    + + +  +  +  + +  +K+   S  + ++S+
Sbjct: 16  KNMSSATIDSYRRDLEDFINFLQKEGINIKNLKREEWQRYLVALYKKYKIKSIARKISSI 75

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLAF 196
           R   K+ +R+ Y+  N    +  PK           ++++ F          G +     
Sbjct: 76  RSFIKFLLREGYINKNYSNFMLIPKIPMYLPEVLDPKEIESFLKIPDPLSPLGIRNMAIL 135

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM-------- 247
           E    +G+R S+     +Q++      ++   K      V L D  ++ L          
Sbjct: 136 ETFYATGIRVSELVNLNIQNVDLEEKYVRCFGKGEKERIVPLGDYAVESLKRYLSVRHLF 195

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAH 305
            P  KE  F+N   +++         KA +   G+ K  S H  R   AT     GA   
Sbjct: 196 NPKDKEALFLNKKGERITRQGVWFIIKAYSKILGLPKKVSPHTFRHSFATHLLSNGADIR 255

Query: 306 ELMATYGWKTVDQAETYTKGADRI 329
            +    G   +   + YT      
Sbjct: 256 IVQELLGHSDIATTQIYTHIVSSK 279


>gi|253990617|ref|YP_003041973.1| phage integrase [Photorhabdus asymbiotica subsp. asymbiotica ATCC
           43949]
 gi|253782067|emb|CAQ85231.1| Putative phage integrase [Photorhabdus asymbiotica]
          Length = 345

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 65/335 (19%), Positives = 119/335 (35%), Gaps = 37/335 (11%)

Query: 6   RLPPFVTKERTRHGKIIYYFRKGHGRRIRL-PYPHESTFIPAYMSALTGSTPKREYINSP 64
           +LP  V+K      K  YY +    + I L P       +    +   G    ++ I   
Sbjct: 12  KLPTRVSKT-----KYSYYLKTKDNKTIMLGPLTMS---MTELWAKYDGEIANKKIIM-- 61

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
                T   L   +  S  +  L+  S+         I++  G  +   I  ++IR  ++
Sbjct: 62  -----TFSKLWGMHLNSPAFTELSARSQKDKLQGAKNILKVFGHINVDNIKPEYIRQYMD 116

Query: 125 SRK-HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
            R   + + A   L+ M V F W   + Y  INPC  V++   K    +  T E+   ++
Sbjct: 117 IRGTQSKTQANHELSYMSVAFGWGYERGYCKINPCSGVKKFSLKNR-DKYITDEE---YQ 172

Query: 184 SFWSEGSQ-PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
             +  GS   ++A E       R  D  +     +      IK  KTG     +  D   
Sbjct: 173 ITYDVGSPIVKIAMEISYLCASRIGDILKLKHSQISEQGIYIKQGKTGAKQIKQWTDRLH 232

Query: 243 KLLA-----MTPIGKETF-FINNDKQKMNATQFSIWFKAKATKA------GVNKSAHGVR 290
           + +        P   +++  +N D  +   + F   ++    KA       ++ + H + 
Sbjct: 233 ETINYAVELFPPTSTQSYVILNADGNQFTKSGFDNHWREAKEKAAELLGRKIDFTFHDI- 291

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           K  A    +  +   +L    G KT  Q + Y + 
Sbjct: 292 KAKAISDFEGSSKDKQL--FSGHKTESQVKVYDRK 324


>gi|229543943|ref|ZP_04433002.1| tyrosine recombinase XerD [Bacillus coagulans 36D1]
 gi|229325082|gb|EEN90758.1| tyrosine recombinase XerD [Bacillus coagulans 36D1]
          Length = 297

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 43/272 (15%), Positives = 98/272 (36%), Gaps = 26/272 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFD-------YRKITTKHIRSGVESRKHTPSSAIQFL 137
             LA N+  S++      +R     +         +    H  + ++ +  +  +  + +
Sbjct: 16  KGLAENTIASYKRDLHSYLRYLQKVELVTSWNEVTRFHILHFLNFLKQQGKSSKTIARHV 75

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPR 193
            S+R   ++ +R+++   +P + +E PK +    +  + ++++   +          +  
Sbjct: 76  ASIRSFHQFLLREKFAGQDPTVHIETPKPERTLPKVLSVQEVEALLAAPKGDTPLHMRDG 135

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM----- 247
              E L  +G+R S+     +  L  ++  IK   K      + +       L       
Sbjct: 136 AMLELLYATGMRVSEMTGLNLDDLHLSMGFIKCIGKGDKERIIPIGRTASAALERYLKEG 195

Query: 248 ------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
                      +  F+N+   +++   F    KA A KA + K  + H +R   AT   +
Sbjct: 196 RPKLVSKTNRTDALFLNHHGARLSRQGFWKILKALAKKANIEKDITPHTLRHSFATHLIE 255

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            GA    +    G   +   + YT    + RL
Sbjct: 256 NGADLRAVQEMLGHADISTTQIYTH-VSKTRL 286


>gi|319954373|ref|YP_004165640.1| tyrosine recombinase xerc [Cellulophaga algicola DSM 14237]
 gi|319423033|gb|ADV50142.1| Tyrosine recombinase xerC [Cellulophaga algicola DSM 14237]
          Length = 298

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 48/274 (17%), Positives = 95/274 (34%), Gaps = 27/274 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVE--SRKHTPSSAIQFLT 138
             L+ NS  S+     +++             +I    ++  +   S+   P S  + ++
Sbjct: 18  RGLSENSISSYSLDIQKLLLFLETNKIVTSPIQIDKHIVQQFIYEISKDVNPRSQARIIS 77

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194
            ++  F + V ++Y   NP   +E PK   +     +++++    +       EG + R 
Sbjct: 78  GLKSFFNYLVFEDYRIDNPLELIESPKTGRKLPDTLSEDEINDLIAAINLSTPEGERNRA 137

Query: 195 AFEFLLYSGLRCSDSCRAGVQH--LQNNIFSIKTQKTGTIITVELPD-----------GF 241
             E L   G+R S+     +     + +   + T K      V + D             
Sbjct: 138 ILETLYGCGVRVSELINLKISDLFFEEDFIKV-TGKGDKQRFVPISDINKKYINLYKNEI 196

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
              L +    ++  F+N   +++         K  A K  + K  S H  R   AT   +
Sbjct: 197 RVHLNIQKGFEDILFLNRRGRQLTRAMIFTIIKQLAIKIDLKKTISPHTFRHSFATHLLE 256

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
            GA    +    G +++   E Y    DR  L  
Sbjct: 257 NGADLRAIQQMLGHESITTTEVYMH-VDRSHLAQ 289


>gi|221633040|ref|YP_002522265.1| tyrosine recombinase xerD [Thermomicrobium roseum DSM 5159]
 gi|221155467|gb|ACM04594.1| tyrosine recombinase xerD [Thermomicrobium roseum DSM 5159]
          Length = 331

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 48/290 (16%), Positives = 112/290 (38%), Gaps = 25/290 (8%)

Query: 65  RKKPTTLKWLISEYR-KSAHWGSLAVNSRISFESYFD----QIIRKSGDFDYRKITTKHI 119
           R +   ++  I E+         L+ N+  ++ +  +     +  + G  D+ ++ ++H+
Sbjct: 12  RVEAGPMQQAIEEFLTGVVRERGLSPNTIAAYRNDLEQFANYVAERFGLRDWSELVSEHL 71

Query: 120 RSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
            + +   +      ++A + L +++    + VR   +  NP   +  P+      R    
Sbjct: 72  EAFLGYLRDRQYAETTAARKLAAIKSFCHYLVRAGLIGANPADGLPVPRVGRFAPRAIGP 131

Query: 177 EDMQQFKS-----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK-TG 230
           ++++Q  +        EG + R     L  +GLR S+     V+ +  +   +  ++  G
Sbjct: 132 KEVEQLIAAASSDRTPEGLRDRAMLITLATTGLRVSELTALDVRDVDLDRGELIVRRPNG 191

Query: 231 TIITVELPDGFMKLLA----------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280
               V L    ++ L            T  G++  F+N+   ++    F +  K  A  A
Sbjct: 192 RERVVPLAREAIEALRDYLERGRPGFTTLKGEQALFLNHRGSRLTRQGFWLILKNYAAAA 251

Query: 281 GVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           G+ + + H +R   A  +   G    +L    G  +    + Y +  +RI
Sbjct: 252 GLPEVTPHTLRHSFAVRALVDGWDLRDLQRVLGHVSPATTQVYRQLLERI 301


>gi|167580058|ref|ZP_02372932.1| site-specific tyrosine recombinase XerD [Burkholderia thailandensis
           TXDOH]
          Length = 323

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 44/272 (16%), Positives = 87/272 (31%), Gaps = 21/272 (7%)

Query: 85  GSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGVESRKH-TPSSAIQFLTSM 140
             L+ N+  ++        Q +         +     +   + +R     +S+ + L+  
Sbjct: 46  HGLSRNTLDAYRRDLQLFAQWLAARHAVSLDRTEKPMLEGYIAARSDGKATSSNRRLSVF 105

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAF 196
           R  + WAVR+   A++P L +   K+        ++  ++   +        G + R   
Sbjct: 106 RRYYGWAVREHRAAVDPTLRIASAKQAPRFPSTLSEAQVEALLAAPDVDTPLGLRDRTML 165

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLLAM 247
           E +  SGLR S+        +  N   ++    G+   +          +          
Sbjct: 166 ELMYASGLRVSELVTLKTVEVGLNEGVVRVTGKGSKERLVPFGEVAHGWIERYLRDARPA 225

Query: 248 T--PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGAT 303
                  +  F+      M   QF    K  A +A V  + S H +R   AT   + GA 
Sbjct: 226 LLGARAADALFVTARGDGMTRQQFWNIIKRHAQQADVRAHLSPHTLRHAFATHLLNHGAD 285

Query: 304 AHELMATYGWKTVDQAETYTKGADRIRLGIKN 335
              +    G   +   + YT  A      +  
Sbjct: 286 LRVVQLLLGHSDISTTQIYTHVARERLKALHA 317


>gi|284008874|emb|CBA75687.1| phage integrase [Arsenophonus nasoniae]
          Length = 326

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 51/271 (18%), Positives = 98/271 (36%), Gaps = 21/271 (7%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK-H 128
           + K L S Y  S H+  L++ S+         I++  G+     I  +HIR  ++ R   
Sbjct: 50  SFKELWSMYLNSPHFSELSIRSQKDKHQGGKNILKVFGNIHVNNIKPEHIRKYMDIRGTQ 109

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           + + A   L+ M V F W   + Y   NPCL +++   K    +  T E+   +   +  
Sbjct: 110 SKTQANHELSYMSVTFSWGYERGYCKNNPCLGIKKFSLKNR-DKYITDEE---YNVTYDS 165

Query: 189 GSQ-PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK---- 243
            SQ  ++A E       R  D        +      I+  KTG     +      +    
Sbjct: 166 ASQIVKIAMEISYLCASRIGDILELKHNQILEEGIYIRQGKTGVKQIKQWTPRLKETIDY 225

Query: 244 LLAMTPIGK--ETFFINNDKQKMNATQFSIWFKAKATKA------GVNKSAHGVRKFSAT 295
            + + P          N++  K   + F   ++   +KA       ++ + H ++    +
Sbjct: 226 AINLFPPQNIESYVIRNSNGTKFTKSGFDNHWREAKSKATKTLGRNLDFTFHDIKAKGIS 285

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGA 326
                  ++ +     G KT  Q + Y +  
Sbjct: 286 DFD---GSSKDKQLFSGHKTESQVQIYDRKV 313


>gi|268591702|ref|ZP_06125923.1| tyrosine recombinase XerD [Providencia rettgeri DSM 1131]
 gi|291312661|gb|EFE53114.1| tyrosine recombinase XerD [Providencia rettgeri DSM 1131]
          Length = 300

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 48/284 (16%), Positives = 99/284 (34%), Gaps = 27/284 (9%)

Query: 74  LISEYRKSAHW--GSLAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVESR 126
           LI ++  +  W    LA N+  S+ +    +       +      + I  +   +     
Sbjct: 9   LIEQFLDTI-WLEQDLAENTLASYRNDLQLLDKWLDAHQLHLESVQSIDLQSFFAERIDC 67

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ----QF 182
            +  +S+ + L++MR LF++  R++    +P   +  PK      +  +++ ++      
Sbjct: 68  GYKATSSARLLSAMRRLFQYLYREKIRLDDPSAVIAAPKIPQRLPKDLSEKQVEDLLNAP 127

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG- 240
            +  +   + +   E L   GLR S+        +      I+   K      + L +  
Sbjct: 128 ATEDALELRDKAMLEVLYACGLRVSELIGLTFSDISLRQGVIRVVGKGDKERLIPLGEEA 187

Query: 241 ---FMKLLAMTPIG------KETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288
                K +             +  F +    KM    F    K  A  A ++    S H 
Sbjct: 188 IYWLEKYIDEGRPDLLNGKTSDILFPSKRGTKMTRQTFWHRIKYYAVLAHIDSELLSPHV 247

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRL 331
           +R   AT   + GA    +    G   +   + YT  A +R+R+
Sbjct: 248 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRV 291


>gi|85059971|ref|YP_455673.1| site-specific tyrosine recombinase XerD [Sodalis glossinidius str.
           'morsitans']
 gi|84780491|dbj|BAE75268.1| phage integrase [Sodalis glossinidius str. 'morsitans']
          Length = 299

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 46/284 (16%), Positives = 100/284 (35%), Gaps = 27/284 (9%)

Query: 74  LISEYRKSAHW--GSLAVNSRISFESYFDQII-----RKSGDFDYRKITTKHIRSGVESR 126
           +I ++  S  W   +LA N+  S+      +      ++    +      +   +     
Sbjct: 8   IIEQFLDSL-WLERNLAENTLASYRLDLQALSAWLQSQQRDSLNASSADLQAFLADRLDH 66

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQF 182
            +  +S+ + L++ R  F++  R++    +P   +  PK      +  ++  +       
Sbjct: 67  GYKATSSARLLSATRRFFQYLYREKRRGNDPSAGISAPKLPQRLPKDLSEAQVGDLLAAP 126

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG- 240
                   + +   E L  +GLR S+     +  +      ++   K      V L +  
Sbjct: 127 AIADPVELRDKAMLEVLYATGLRVSELVGLTLSDVSLRQGVVRVIGKGDKERLVPLGEEA 186

Query: 241 ------FMKLLAMTPIGKETF---FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288
                 +++         ++    F +N  +KM    F    K  A  AG++    S H 
Sbjct: 187 VYWIEYYLEHGRPALTHGQSLDILFPSNRSRKMTRQTFWHRIKHYAILAGIDSERLSPHV 246

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRL 331
           +R   AT   + GA    +    G   +   + YT  A +R++L
Sbjct: 247 LRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVATERLKL 290


>gi|291287439|ref|YP_003504255.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809]
 gi|290884599|gb|ADD68299.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809]
          Length = 295

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 40/265 (15%), Positives = 97/265 (36%), Gaps = 21/265 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA---IQFLTSMR 141
             LA NS  ++    +  I         +   + + + +   + + +S     + ++ + 
Sbjct: 18  MGLAENSVKAYHQDIENYIA-FTLKPLVECGAQELVAYMTHLRKSGASIETVQRRISGIS 76

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLAFE 197
             + + + ++ ++ NP   V +P +  +       +++++  +        G + R+ FE
Sbjct: 77  RFYDFLIMEKIISSNPVGFVSKPSKWEKLPVFLNFDEVEKLINSPDMSSGLGYRDRIIFE 136

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAM--------- 247
            +  +G+R S+     V  +  +   +K T K      V +     + +           
Sbjct: 137 TMYSTGMRISELVGLKVLDMDMHREIMKVTGKGSKQRFVPMYGSLAEKMKTYLDIRHDSL 196

Query: 248 -TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATA 304
                +   F++ + +K++     +  K    +AG+ K  S H +R   AT     GA  
Sbjct: 197 VKERDEGWLFLSRNGKKLDREYVWMIIKKYCERAGIKKNVSPHTLRHSFATHLLTNGADL 256

Query: 305 HELMATYGWKTVDQAETYTKGADRI 329
             +    G   +   E YT+  D  
Sbjct: 257 RTIQVLLGHVDLSTTERYTQVTDNK 281


>gi|167585653|ref|ZP_02378041.1| site-specific tyrosine recombinase XerD [Burkholderia ubonensis Bu]
          Length = 315

 Score =  137 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 46/268 (17%), Positives = 86/268 (32%), Gaps = 22/268 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH---IRSGVESRKH-TPSSAIQFLTSM 140
             LA N+  ++        +         +       +   + +R     +S+ + L+  
Sbjct: 38  HGLARNTLDAYRRDLALFAQWLAATHDASLDVADEMMVTGYIAARSDGKATSSNRRLSVF 97

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAF 196
           R  + WAVR+   + +P L +   K+        ++  ++            G + R   
Sbjct: 98  RRYYGWAVREHRASADPTLRITSAKQAARFPSTLSEAQVEALLGAPDVDTPLGLRDRTML 157

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLLAM 247
           E +  SGLR S+        +  N   ++    G+   +          +          
Sbjct: 158 ELMYASGLRVSELVTLKTVEVGLNEGVVRVMGKGSKERLVPFGEVAHGWIERYLRHARPA 217

Query: 248 T--PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGAT 303
                  +  F+      M   QF    K  A +A V  + S H +R   AT   + GA 
Sbjct: 218 LLGARAADALFVTARGDGMTRQQFWNIIKRHARQADVRAHLSPHTLRHAFATHLLNHGAD 277

Query: 304 AHELMATYGWKTVDQAETYTKGADRIRL 331
              +    G   +   + YT  A R RL
Sbjct: 278 LRVVQMLLGHSDISTTQIYTHVA-RERL 304


>gi|327253769|gb|EGE65398.1| phage integrase family protein [Escherichia coli STEC_7v]
          Length = 295

 Score =  137 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 50/267 (18%), Positives = 91/267 (34%), Gaps = 17/267 (6%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK-H 128
           T+  L   +  S  +  LA  ++  +  +   ++   G      +  + +R  ++ R   
Sbjct: 20  TVAKLWHMFMDSPAFTELAPRTQKDYRQHQRALLAVFGKMLADNVKIEQVRIFMDKRGLE 79

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           + + A   L S+  ++ W   + YV  NPC  V +   K   +   T E      +    
Sbjct: 80  SKTQANHELASLSRVYGWGYERGYVKNNPCKGVRKFTLKARTVYI-TDEQYAAIYA--EA 136

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248
             Q R+A E       R  D      Q + +    I+  KTGT    E        + + 
Sbjct: 137 IPQLRIAMEISYLCAARLGDVLELKWQDIMDKGIYIEQNKTGTKQIKEWSPRLRTAIQLA 196

Query: 249 ----PIGKETFFINNDKQKMNATQFSIWF----KAKATKAGVN--KSAHGVRKFSATISA 298
                   E         K+ A   + W+    +A   KAGV    + H + K       
Sbjct: 197 RNVSSGTCEYVINTTKGGKVIAKTLNNWWNQAKRAAEQKAGVPFGCNFHDI-KAKGISDY 255

Query: 299 DAGATAHELMATYGWKTVDQAETYTKG 325
           +   ++ +     G KT +Q   Y + 
Sbjct: 256 E--GSSRDKQIFSGHKTENQVLIYDRK 280


>gi|118444203|ref|YP_878098.1| tyrosine recombinase XerD [Clostridium novyi NT]
 gi|118134659|gb|ABK61703.1| tyrosine recombinase XerD [Clostridium novyi NT]
          Length = 292

 Score =  137 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 49/278 (17%), Positives = 103/278 (37%), Gaps = 20/278 (7%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQII-----RKSGDFDYRKITTKHIRSGVESRKH 128
            + +Y +      L+ N+  ++     +       R+    D   ++       ++  K 
Sbjct: 4   YLKQYIEDMRKKELSKNTIEAYNRDIIKFCKFLKEREEDILDADMVSIMAYVQTLKKEKK 63

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS- 187
             SS I+ + S+R  +K+ +R      NP ++ E PK K       T +++++F +    
Sbjct: 64  ADSSIIRSIVSIRNFYKYLIRMGKDVDNPLINYEVPKNKRTIPEILTVDEVEKFLNAPDC 123

Query: 188 ---EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK-TGTIITVE------- 236
              +G + +   E +  +G++ S+  R  +  +   +  +K +        +        
Sbjct: 124 SEYKGIRDKAMLELMYATGMKVSELLRVTIFDINLKLCYVKCKGVKDKERIIPIGSYAVN 183

Query: 237 -LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFS 293
            L +       M+    ET F N    KM    F    K  A  AG+NK    + +R   
Sbjct: 184 CLNEYLNVRDKMSAANSETLFCNLRGGKMTRQGFWKIVKKYAKDAGINKKIDSYTLRHSF 243

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           A      GA    +    G  T+   + Y+  + + ++
Sbjct: 244 AVHLLQNGADIKSVQELLGHNTIATTQIYSSISKQNKI 281


>gi|297620964|ref|YP_003709101.1| Tyrosine recombinase XerD [Waddlia chondrophila WSU 86-1044]
 gi|297376265|gb|ADI38095.1| Tyrosine recombinase XerD [Waddlia chondrophila WSU 86-1044]
          Length = 292

 Score =  137 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 55/268 (20%), Positives = 94/268 (35%), Gaps = 24/268 (8%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE------SRKHTPS 131
           Y  S     L  N+  +++      I        +          V+      SR+   S
Sbjct: 11  YLGSE--KGLTQNTIEAYQRDVFSFISHLESKGIQGFNEVGQEEIVDFLSYLKSRQLAVS 68

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FWS 187
           +  + L +++V F++  R+  V  N  L ++ PK         T E+M+   +      S
Sbjct: 69  TISRHLIAIKVFFRFLKREGVVENNVSLYLQSPKGWQIIPDVLTMEEMEILLNQPDPETS 128

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL-- 245
           EG + R   E L   GLR S+ C+  ++ L+     +   K      V L     + +  
Sbjct: 129 EGVRDRAILELLYACGLRVSELCQMKIEDLEEETVRV-FGKGRKERIVPLGSHASQAINR 187

Query: 246 -------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATI 296
                    +       F+N   + MN        K    +AG+ KS   H +R   AT 
Sbjct: 188 YLAKRADCKSIDEAGYLFVNKRGKPMNRVLIWKMIKEYGAQAGITKSLSPHTMRHSFATH 247

Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324
             D GA    +    G  ++   + YT 
Sbjct: 248 LLDNGAELRVIQEMLGHASISSTDRYTH 275


>gi|324017291|gb|EGB86510.1| tyrosine recombinase XerD [Escherichia coli MS 117-3]
          Length = 298

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 43/270 (15%), Positives = 95/270 (35%), Gaps = 24/270 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGVESRKHTPSSAIQFLTS 139
            +LA N+  ++      ++             +    + + +      +  +S+ + L++
Sbjct: 19  KNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGYKATSSARLLSA 78

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195
           +R LF++  R+++   +P   +  PK      +  ++  +++             + +  
Sbjct: 79  VRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLIDQPLELRDKAM 138

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKET 254
            E L  +GLR S+     +  +      ++   K      V L +  +  L         
Sbjct: 139 LEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRP 198

Query: 255 FFIN----------NDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG 301
           + +N             Q+M    F    K  A  AG++    S H +R   AT   + G
Sbjct: 199 WLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHG 258

Query: 302 ATAHELMATYGWKTVDQAETYTKGA-DRIR 330
           A    +    G   +   + YT  A +R+R
Sbjct: 259 ADLRVVQILLGHSDLSTTQIYTHVATERLR 288


>gi|254181547|ref|ZP_04888144.1| tyrosine recombinase XerD [Burkholderia pseudomallei 1655]
 gi|254298194|ref|ZP_04965646.1| tyrosine recombinase XerD [Burkholderia pseudomallei 406e]
 gi|157808367|gb|EDO85537.1| tyrosine recombinase XerD [Burkholderia pseudomallei 406e]
 gi|184212085|gb|EDU09128.1| tyrosine recombinase XerD [Burkholderia pseudomallei 1655]
          Length = 329

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 53/307 (17%), Positives = 96/307 (31%), Gaps = 28/307 (9%)

Query: 52  TGSTPKREYINSPRKKPTTLKWLISE----YRKSAHW--GSLAVNSRISFESYFDQIIRK 105
            G  P             +  WL S         A W    L+ N+  ++        + 
Sbjct: 13  AGRAPAPPADRPVDALAASPAWLDSRASIDLFCDAMWLEHGLSRNTLDAYRRDLQLFAQW 72

Query: 106 SGDF---DYRKITTKHIRSGVESRKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV 161
                       +   +   + +R     +S+ + L+  R  + WAVR+   A++P L +
Sbjct: 73  LAARYAASVDHASEPTLTEYIAARSDGKATSSNRRLSVFRRYYGWAVREHRAAVDPTLRI 132

Query: 162 ERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217
              K+        ++  ++   +        G + R   E +  SGLR S+        +
Sbjct: 133 ASAKQAPRFPSTLSEAQVEALLAAPDVDTPLGLRDRTMLELMYASGLRVSELVTLKTVEV 192

Query: 218 QNNIFSIKTQKTGTIITV---------ELPDGFMKLLAMT--PIGKETFFINNDKQKMNA 266
             N   ++    G+   +          +                 +  F+      M  
Sbjct: 193 GLNEGVVRVTGKGSKERLVPFGEVAHGWIERYLRDARPALLGARAADALFVTARGDGMTR 252

Query: 267 TQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            QF    K  A +A V  + S H +R   AT   + GA    +    G   +   + YT 
Sbjct: 253 QQFWNIIKRHAQQADVRVHLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTH 312

Query: 325 GADRIRL 331
            A R RL
Sbjct: 313 VA-RERL 318


>gi|254467274|ref|ZP_05080685.1| phage integrase [Rhodobacterales bacterium Y4I]
 gi|206688182|gb|EDZ48664.1| phage integrase [Rhodobacterales bacterium Y4I]
          Length = 392

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 62/341 (18%), Positives = 113/341 (33%), Gaps = 24/341 (7%)

Query: 25  FRKGHGRRIRLPYPHESTFIPAYMSA-------LTGSTPKREYINSPRKKPTTLKWLISE 77
           +RKG   R      H    +             +       E I+  RK P T+  L   
Sbjct: 45  YRKGGRTRRVSVGRHGKITVDEARKLAKEIMGQVAKGENPAEEISQHRKAP-TVAALCER 103

Query: 78  YRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF 136
           + ++        +++  +    D  I+   G F    +  + I       +  P  A + 
Sbjct: 104 FFEAHAKERCKPSTQKEYRRAIDLFIVPALGSFKVVDVERRDIAELHHKFRDKPYQANRT 163

Query: 137 LTSMRVLFKWAVRQEYVAI--NPCLSVERPKRKTEGIRPWTKEDMQQF-------KSFWS 187
           L  +  +F  A          NPC  V + +      R  ++ ++Q+        +   S
Sbjct: 164 LGVLSKMFNLAEIWGLRPDGSNPCRHVPKYREVKRE-RFLSQPELQRLGQVLSEVEREGS 222

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
           E      AF  L+ +G R  +       ++  N   +   KTG    + LP     +LA 
Sbjct: 223 ETPHMVAAFRLLILTGCRLGEIQTLKWDYITANGMELPDSKTGAR-RIPLPQPARDVLAR 281

Query: 248 TPIGKETFFINNDKQK-MNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAH 305
            P      ++   K     AT     ++    +AG+     H +R   A+ +  AG    
Sbjct: 282 LPRSPGNPYVIEGKLPGQYATDLQHPWRRIRDRAGLAGVRIHDLRHTYASNAVSAGMPIQ 341

Query: 306 ELMATYGWKTVDQAETYTKGAD--RIRLGIKNSRRISSVVD 344
            +    G   +     Y   AD    +   +N+ R+ S+V 
Sbjct: 342 MVGRLLGHTQIQTTMRYAHLADDPVRQAAEENAARLGSLVG 382


>gi|169830712|ref|YP_001716694.1| phage integrase family protein [Candidatus Desulforudis audaxviator
           MP104C]
 gi|169637556|gb|ACA59062.1| phage integrase family protein [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 300

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 46/291 (15%), Positives = 99/291 (34%), Gaps = 24/291 (8%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRK--------ITTKHIRS 121
           L+ +I E+ +        +  +  ++ S    +                   +  ++   
Sbjct: 4   LQEVIREFLRYLRAEKDASPETLAAYRSDLRPLEDFLFRERIAPELANLTTPVLRRYFIW 63

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
             E RK   +S  + +   R  F++   QEY+  +P   +  PK          +E+++ 
Sbjct: 64  LQEERKLKAASLRRKIHCFRSFFRYLAEQEYIPGDPMRKIRPPKEPDRVPIYLKEEELKW 123

Query: 182 FKSFW-----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-ITV 235
             +           + +L    L Y GLR S+  R     +     +++ +  G     +
Sbjct: 124 LLTAPGHLGGPYHLRDKLILHLLAYCGLRRSELLRLDWDDVDLGAGTLRVRGKGKRERLI 183

Query: 236 ELPDGFMKLL-----AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAH 287
            L     ++L        P+     F+  +  +MN    +  FK     AG++    + H
Sbjct: 184 PLIPELQQILWEYLQTRLPLENRALFLGREGGRMNKDALTRLFKRYVRMAGLDPAVITPH 243

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSR 337
            +R   AT+  + G     +    G   +     Y    + R+R  ++  R
Sbjct: 244 KLRHSFATLLLEKGTDVFTIQELMGHADLASTRIYAHCSSKRLREAVERIR 294


>gi|126455125|ref|YP_001065195.1| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei
           1106a]
 gi|167737435|ref|ZP_02410209.1| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei
           14]
 gi|167823028|ref|ZP_02454499.1| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei
           9]
 gi|167909818|ref|ZP_02496909.1| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei
           112]
 gi|226192850|ref|ZP_03788463.1| tyrosine recombinase XerD [Burkholderia pseudomallei Pakistan 9]
 gi|242316366|ref|ZP_04815382.1| tyrosine recombinase XerD [Burkholderia pseudomallei 1106b]
 gi|126228767|gb|ABN92307.1| tyrosine recombinase XerD [Burkholderia pseudomallei 1106a]
 gi|225935100|gb|EEH31074.1| tyrosine recombinase XerD [Burkholderia pseudomallei Pakistan 9]
 gi|242139605|gb|EES26007.1| tyrosine recombinase XerD [Burkholderia pseudomallei 1106b]
          Length = 333

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 53/307 (17%), Positives = 97/307 (31%), Gaps = 28/307 (9%)

Query: 52  TGSTPKREYINSPRKKPTTLKWLISE----YRKSAHW--GSLAVNSRISFESYFDQIIRK 105
            G  P +           +  WL S         A W    L+ N+  ++        + 
Sbjct: 17  AGRAPAQPADRPVDALAASPAWLDSRASIDLFCDAMWLEHGLSRNTLDAYRRDLQLFAQW 76

Query: 106 SGDFDYRKIT---TKHIRSGVESRKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV 161
                   +       +   + +R     +S+ + L+  R  + WAVR+   A++P L +
Sbjct: 77  LAARHAASVDHASEPTLTEYIAARSDGKATSSNRRLSVFRRYYGWAVREHRAAVDPTLRI 136

Query: 162 ERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217
              K+        ++  ++   +        G + R   E +  SGLR S+        +
Sbjct: 137 ASAKQAPRFPSTLSEAQVEALLAAPDVDTPLGLRDRTMLELMYASGLRVSELVTLKTVEV 196

Query: 218 QNNIFSIKTQKTGTIITV---------ELPDGFMKLLAMT--PIGKETFFINNDKQKMNA 266
             N   ++    G+   +          +                 +  F+      M  
Sbjct: 197 GLNEGVVRVTGKGSKERLVPFGEVAHGWIERYLRDARPALLGARAADALFVTARGDGMTR 256

Query: 267 TQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            QF    K  A +A V  + S H +R   AT   + GA    +    G   +   + YT 
Sbjct: 257 QQFWNIIKRHAQQADVRVHLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTH 316

Query: 325 GADRIRL 331
            A R RL
Sbjct: 317 VA-RERL 322


>gi|116333414|ref|YP_794941.1| integrase [Lactobacillus brevis ATCC 367]
 gi|116098761|gb|ABJ63910.1| tyrosine recombinase XerD subunit [Lactobacillus brevis ATCC 367]
          Length = 298

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 45/270 (16%), Positives = 86/270 (31%), Gaps = 24/270 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH------IRSGVESRKHTPSSAIQFLT 138
             LA NS  S+      +                        S + +   + +S I  ++
Sbjct: 19  QGLAANSVTSYTQELRNLGTYLAQQHLTSFKDADRLTIMAYLSNLTATGKSRNSVIHAVS 78

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRL 194
           ++R  +++ V+   +  NP  +V  PK         T  ++ +  +        G + R 
Sbjct: 79  ALRKFYRYLVQTHQMTTNPMANVAAPKHAEHLPAVLTVAEVDRLLAAPDTTTKYGLRDRA 138

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM------ 247
             E +  +GLR S+     +  L   +  I+T  K      + + D     +        
Sbjct: 139 ILEVMYATGLRVSELVHLKLADLHLEMGLIQTLGKGDKERIIPIGDVATDWINRYLQTSR 198

Query: 248 ----TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301
                       F+N     ++        K     A +NK  + H +R   AT   + G
Sbjct: 199 PVLLKQRTSPYLFLNAHGGGLSRQAIWQKIKQYVAVAQINKDVTPHTLRHSFATHILENG 258

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRL 331
           A    +    G   +   + YT    + RL
Sbjct: 259 ADLRVVQELLGHADITTTQIYTH-ISKKRL 287


>gi|33592631|ref|NP_880275.1| site-specific tyrosine recombinase XerD [Bordetella pertussis
           Tohama I]
 gi|33572277|emb|CAE41829.1| integrase/recombinase [Bordetella pertussis Tohama I]
          Length = 310

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 49/306 (16%), Positives = 98/306 (32%), Gaps = 35/306 (11%)

Query: 62  NSPRKKPTTLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD---------- 110
           ++P      L   I   + +      LA N+  ++        +   +            
Sbjct: 4   SAPLASQADLDAFIDAVWLEDG----LAANTLAAYRRDLSAFAQWLENLACHPGLATGAS 59

Query: 111 YRKITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168
            R+     I +   +R  +   ++A + L ++R  + WA+R+     +PCL++   K+  
Sbjct: 60  LREAGKGDIEAWFAARHAESRATTANRRLAALRRFYAWALRERLTPSDPCLTLVTAKQPP 119

Query: 169 EGIRPWTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
              +  ++  +             G + R   E L  +GLR S+        +  N   +
Sbjct: 120 RLPKTLSEAQVDALLQAPDLDTARGLRDRAMLETLYATGLRVSELVSVKALDVSLNEGVV 179

Query: 225 KT--QKTGTIITVELPDGFMKLLAM----------TPIGKETFFINNDKQKMNATQFSIW 272
           +    K G    V L       +                 +  F+    + M+   F   
Sbjct: 180 RVVMGKGGKDRLVPLGAEAAHWIERYAGSARPELLGARVADALFVTARAEPMSRQAFWQL 239

Query: 273 FKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
            K  A  A ++   S H +R   AT   + GA    +    G   +   + YT  A    
Sbjct: 240 VKKYALAADIHAPLSPHVLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVARERL 299

Query: 331 LGIKNS 336
             +  +
Sbjct: 300 KALHAA 305


>gi|126438545|ref|YP_001057962.1| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei
           668]
 gi|126451016|ref|YP_001079697.1| site-specific tyrosine recombinase XerD [Burkholderia mallei NCTC
           10247]
 gi|134279602|ref|ZP_01766314.1| tyrosine recombinase XerD [Burkholderia pseudomallei 305]
 gi|166998458|ref|ZP_02264318.1| tyrosine recombinase XerD [Burkholderia mallei PRL-20]
 gi|167814554|ref|ZP_02446234.1| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei
           91]
 gi|167844587|ref|ZP_02470095.1| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei
           B7210]
 gi|167901578|ref|ZP_02488783.1| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei
           NCTC 13177]
 gi|217419758|ref|ZP_03451264.1| tyrosine recombinase XerD [Burkholderia pseudomallei 576]
 gi|254196593|ref|ZP_04903017.1| tyrosine recombinase XerD [Burkholderia pseudomallei S13]
 gi|254360098|ref|ZP_04976368.1| tyrosine recombinase XerD [Burkholderia mallei 2002721280]
 gi|52208916|emb|CAH34855.1| putative integrase/recombinase [Burkholderia pseudomallei K96243]
 gi|126218038|gb|ABN81544.1| tyrosine recombinase XerD [Burkholderia pseudomallei 668]
 gi|126243886|gb|ABO06979.1| tyrosine recombinase XerD [Burkholderia mallei NCTC 10247]
 gi|134248802|gb|EBA48884.1| tyrosine recombinase XerD [Burkholderia pseudomallei 305]
 gi|148029338|gb|EDK87243.1| tyrosine recombinase XerD [Burkholderia mallei 2002721280]
 gi|169653336|gb|EDS86029.1| tyrosine recombinase XerD [Burkholderia pseudomallei S13]
 gi|217397062|gb|EEC37078.1| tyrosine recombinase XerD [Burkholderia pseudomallei 576]
 gi|243065512|gb|EES47698.1| tyrosine recombinase XerD [Burkholderia mallei PRL-20]
          Length = 333

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 53/307 (17%), Positives = 96/307 (31%), Gaps = 28/307 (9%)

Query: 52  TGSTPKREYINSPRKKPTTLKWLISE----YRKSAHW--GSLAVNSRISFESYFDQIIRK 105
            G  P             +  WL S         A W    L+ N+  ++        + 
Sbjct: 17  AGRAPAPPADRPVDALAASPAWLDSRASIDLFCDAMWLEHGLSRNTLDAYRRDLQLFAQW 76

Query: 106 SGDFDYRKIT---TKHIRSGVESRKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV 161
                   +       +   + +R     +S+ + L+  R  + WAVR+   A++P L +
Sbjct: 77  LAARHAASVDHASEPTLTEYIAARSDGKATSSNRRLSVFRRYYGWAVREHRAAVDPTLRI 136

Query: 162 ERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217
              K+        ++  ++   +        G + R   E +  SGLR S+        +
Sbjct: 137 ASAKQAPRFPSTLSEAQVEALLAAPDVDTPLGLRDRTMLELMYASGLRVSELVTLKTVEV 196

Query: 218 QNNIFSIKTQKTGTIITV---------ELPDGFMKLLAMT--PIGKETFFINNDKQKMNA 266
             N   ++    G+   +          +                 +  F+      M  
Sbjct: 197 GLNEGVVRVTGKGSKERLVPFGEVAHGWIERYLRDARPALLGARAADALFVTARGDGMTR 256

Query: 267 TQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            QF    K  A +A V  + S H +R   AT   + GA    +    G   +   + YT 
Sbjct: 257 QQFWNIIKRHAQQADVRVHLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTH 316

Query: 325 GADRIRL 331
            A R RL
Sbjct: 317 VA-RERL 322


>gi|325954400|ref|YP_004238060.1| Tyrosine recombinase xerC [Weeksella virosa DSM 16922]
 gi|323437018|gb|ADX67482.1| Tyrosine recombinase xerC [Weeksella virosa DSM 16922]
          Length = 294

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 47/260 (18%), Positives = 90/260 (34%), Gaps = 21/260 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HTPSSAIQFLTSMRV 142
             +A N+  S+     ++ ++      ++ T   +   V +    ++  S  + L+ ++ 
Sbjct: 18  KHMANNTIESYMRDIKKL-QQFSPLLPQEHTYDSLVEFVHAMAKEYSQRSQARILSGLKS 76

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLAFEF 198
            F +   +E    NP   +E PK  T+     T++++ +          EG + R   E 
Sbjct: 77  YFNYLQYEEIRQDNPTELLESPKIGTKLPDVLTEKEIDRLVDVIDLSKPEGERNRAIIEM 136

Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPD-----------GFMKLLA 246
           L   GLR ++     +  L      I+   K      V +                K   
Sbjct: 137 LYGCGLRVTELVNLRISDLFFEEGYIRVLGKGNKERLVPISPYTIKYIDLYRNEIRKHQP 196

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATA 304
           + P  ++  F+N   + +         K  +  AG+ K  S H  R   AT     GA  
Sbjct: 197 IQPGYEDILFLNRRGRNITRVMIFTIIKELSIIAGIQKNISPHTFRHSFATHLLKNGADL 256

Query: 305 HELMATYGWKTVDQAETYTK 324
             +    G + +   E YT 
Sbjct: 257 RAIQQMLGHENIVTTEVYTH 276


>gi|331672503|ref|ZP_08373293.1| putative integrase for prophage [Escherichia coli TA280]
 gi|331070409|gb|EGI41774.1| putative integrase for prophage [Escherichia coli TA280]
          Length = 300

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 50/267 (18%), Positives = 91/267 (34%), Gaps = 17/267 (6%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK-H 128
           T+  L   +  S  +  LA  ++  +  +   ++   G      +  + +R  ++ R   
Sbjct: 25  TVAKLWHMFMDSPAFTELAPRTQKDYRQHQRALLAVFGKVLADNVKIEQVRIFMDKRGLE 84

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           + + A   L S+  ++ W   + YV  NPC  V +   K   +   T E      +    
Sbjct: 85  SKTQANHELASLSRVYGWGYERGYVKNNPCKGVRKFTLKARTVYI-TDEQYAAIYA--EA 141

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248
             Q R+A E       R  D      Q + +    I+  KTGT    E        + + 
Sbjct: 142 IPQLRIAMEISYLCAARLGDVLELKWQDIMDKGIYIEQNKTGTKQIKEWSPRLRTAIQLA 201

Query: 249 ----PIGKETFFINNDKQKMNATQFSIWF----KAKATKAGVN--KSAHGVRKFSATISA 298
                   E         K+ A   + W+    +A   KAGV    + H + K       
Sbjct: 202 RNVSSGTCEYVINTTKGGKVIAKTLNNWWNQAKRAAEQKAGVPFGCNFHDI-KAKGISDY 260

Query: 299 DAGATAHELMATYGWKTVDQAETYTKG 325
           +   ++ +     G KT +Q   Y + 
Sbjct: 261 E--GSSRDKQIFSGHKTENQVLIYDRK 285


>gi|332180706|gb|AEE16394.1| Tyrosine recombinase xerC [Treponema brennaborense DSM 12168]
          Length = 308

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 54/282 (19%), Positives = 97/282 (34%), Gaps = 24/282 (8%)

Query: 67  KPTTLKWLISEYRK-SAHWGSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIR--- 120
            P TL+    E+    +   +LA+N+   + +   ++ R  G        +T   +R   
Sbjct: 4   APATLQEACEEFLLYESSVRNLALNTIAGYRNDLARLCRLLGGASLPLTSVTVTDLRFCI 63

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
             +  +K   SS  +F+ ++R LF +  R EY+  NP   +   K+     R  T+ ++ 
Sbjct: 64  GELSRKKSAASSVNRFIAAVRSLFAYCRRFEYIKSNPATELHTVKQPRHLPRFMTESEVD 123

Query: 181 QF-----KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIIT 234
                  +      ++    FE L  SG R S+     +     +   ++ T K G    
Sbjct: 124 ALCSQPERKTLLWQTRDTAIFEMLYSSGCRVSELASLRLSDFSADFRSAVVTGKGGKDRR 183

Query: 235 VELPDG--------FMKLLAMTPIGK--ETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284
           V   +           +  A  P  +     FIN     +            +   G +K
Sbjct: 184 VFFSEQAGKALAGYLRERAARIPKNRTVSAVFINMQGTPLTTRGIRYIVSRYSGLEGTDK 243

Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             S H  R   AT     GA    +    G  ++   + YT 
Sbjct: 244 PVSPHAFRHTFATSMLSHGADVRVVQELLGHSSISTTQRYTH 285


>gi|238561655|ref|ZP_00441610.2| tyrosine recombinase XerD [Burkholderia mallei GB8 horse 4]
 gi|254208847|ref|ZP_04915195.1| tyrosine recombinase XerD [Burkholderia mallei JHU]
 gi|147750723|gb|EDK57792.1| tyrosine recombinase XerD [Burkholderia mallei JHU]
 gi|238524066|gb|EEP87501.1| tyrosine recombinase XerD [Burkholderia mallei GB8 horse 4]
          Length = 329

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 53/307 (17%), Positives = 96/307 (31%), Gaps = 28/307 (9%)

Query: 52  TGSTPKREYINSPRKKPTTLKWLISE----YRKSAHW--GSLAVNSRISFESYFDQIIRK 105
            G  P             +  WL S         A W    L+ N+  ++        + 
Sbjct: 13  AGRAPAPPADRLVDALAASPAWLDSRASIDLFCDAMWLEHGLSRNTLDAYRRDLQLFAQW 72

Query: 106 SGDFDYRKIT---TKHIRSGVESRKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV 161
                   +       +   + +R     +S+ + L+  R  + WAVR+   A++P L +
Sbjct: 73  LAARHAASVDHASEPTLTEYIAARSDGKATSSNRRLSVFRRYYGWAVREHRAAVDPTLRI 132

Query: 162 ERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217
              K+        ++  ++   +        G + R   E +  SGLR S+        +
Sbjct: 133 ASAKQAPRFPSTLSEAQVEALLAAPDVDTPLGLRDRTMLELMYASGLRVSELVTLKTVEV 192

Query: 218 QNNIFSIKTQKTGTIITV---------ELPDGFMKLLAMT--PIGKETFFINNDKQKMNA 266
             N   ++    G+   +          +                 +  F+      M  
Sbjct: 193 GLNEGVVRVTGKGSKERLVPFGEVAHGWIERYLRDARPALLGARAADALFVTARGDGMTR 252

Query: 267 TQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            QF    K  A +A V  + S H +R   AT   + GA    +    G   +   + YT 
Sbjct: 253 QQFWNIIKRHAQQADVRVHLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTH 312

Query: 325 GADRIRL 331
            A R RL
Sbjct: 313 VA-RERL 318


>gi|99078558|ref|YP_611816.1| phage integrase [Ruegeria sp. TM1040]
 gi|99035696|gb|ABF62554.1| phage integrase [Ruegeria sp. TM1040]
          Length = 411

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 62/341 (18%), Positives = 113/341 (33%), Gaps = 24/341 (7%)

Query: 25  FRKGHGRRIRLPYPHESTFIPAYMSA-------LTGSTPKREYINSPRKKPTTLKWLISE 77
           +RKG   R      H    +             +       E I+  RK P T+  L   
Sbjct: 64  YRKGGRTRRVSVGRHGKITVDEARKLAKEIMGQVAKGENPAEEISQHRKAP-TVAALCER 122

Query: 78  YRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF 136
           + ++        +++  +    D  I+   G F    +  + I       +  P  A + 
Sbjct: 123 FFEAHAKERCKPSTQKEYRRAIDLFIVPALGSFKVVDVERRDIAELHHKFRDKPHQANRT 182

Query: 137 LTSMRVLFKWAVRQEYVAI--NPCLSVERPKRKTEGIRPWTKEDMQQF-------KSFWS 187
           L  +  +F  A          NPC  V + +      R  ++ ++Q+        +   S
Sbjct: 183 LGVLSKMFNLAEIWGLRPDGSNPCRHVPKYREVKRE-RFLSQSELQRLGQVLTEVEREGS 241

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
           E      AF  L+ +G R  +       ++  N   +   KTG    + LP     +LA 
Sbjct: 242 ETPHMVAAFRLLILTGCRLGEIQTLKWGYITANGMELPDSKTGAR-RIPLPQPARDVLAR 300

Query: 248 TPIGKETFFINNDKQK-MNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAH 305
            P      ++   K     AT     ++    +AG+     H +R   A+ +  AG    
Sbjct: 301 LPRTPGHPYVIEGKLPGQYATDLQHPWRRIRDRAGLCGVRIHDLRHTYASNAVSAGMPIQ 360

Query: 306 ELMATYGWKTVDQAETYTKGAD--RIRLGIKNSRRISSVVD 344
            +    G   +     Y   AD    +   +N+ R+ S+V 
Sbjct: 361 MVGRLLGHTQIQTTMRYAHLADDPVRQAAEENAARLGSMVG 401


>gi|221199203|ref|ZP_03572247.1| tyrosine recombinase XerD [Burkholderia multivorans CGD2M]
 gi|221206600|ref|ZP_03579612.1| tyrosine recombinase XerD [Burkholderia multivorans CGD2]
 gi|221173255|gb|EEE05690.1| tyrosine recombinase XerD [Burkholderia multivorans CGD2]
 gi|221180488|gb|EEE12891.1| tyrosine recombinase XerD [Burkholderia multivorans CGD2M]
          Length = 316

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 49/268 (18%), Positives = 91/268 (33%), Gaps = 22/268 (8%)

Query: 85  GSLAVNSRISFES---YFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSSAIQFLTSM 140
             LA N+  ++      F Q +  + D          +   + +R+    +S+ + L+  
Sbjct: 39  HGLARNTLDAYRRDLTLFSQWLAATHDAALDAADETMLTGYIAARRDGKATSSNRRLSVF 98

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAF 196
           R  + WAVR+   + +P L +   K+        ++  ++            G + R   
Sbjct: 99  RRYYGWAVREHRASADPTLRIASAKQAARFPSTLSEAQVEALLGAPDIATPLGLRDRTML 158

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLLAM 247
           E +  SGLR S+        +  N   ++    G+   +          +     +    
Sbjct: 159 ELMYASGLRVSELVTLKTVEVGLNEGVVRVMGKGSKERLVPFGEVAHGWIERYLREARPA 218

Query: 248 T--PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGAT 303
                  +  F+      M   QF    K  A +A V  + S H +R   AT   + GA 
Sbjct: 219 LLGARAADALFVTARGDGMTRQQFWNIIKRHAQQADVRAHLSPHTLRHAFATHLLNHGAD 278

Query: 304 AHELMATYGWKTVDQAETYTKGADRIRL 331
              +    G   +   + YT  A R RL
Sbjct: 279 LRVVQLLLGHADISTTQIYTHVA-RERL 305


>gi|254203866|ref|ZP_04910226.1| tyrosine recombinase XerD [Burkholderia mallei FMH]
 gi|147745378|gb|EDK52458.1| tyrosine recombinase XerD [Burkholderia mallei FMH]
          Length = 333

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 51/321 (15%), Positives = 97/321 (30%), Gaps = 39/321 (12%)

Query: 49  SALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGS-----------------LAVNS 91
            A+          ++ R        L+     S  W                   L+ N+
Sbjct: 3   RAVHACAADTAGGDAGRAPAPPADRLVDALAASPAWLDSRASIDLFCDAMWLEHGLSRNT 62

Query: 92  RISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVESRKH-TPSSAIQFLTSMRVLFKWA 147
             ++        +         +       +   + +R     +S+ + L+  R  + WA
Sbjct: 63  LDAYRRDLQLFAQWLAARHAASVDHASEPTLTEYIAARSDGKATSSNRRLSVFRRYYGWA 122

Query: 148 VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFEFLLYSG 203
           VR+   A++P L +   K+        ++  ++   +        G + R   E +  SG
Sbjct: 123 VREHRAAVDPTLRIASAKQAPRFPSTLSEAQVEALLAAPDVDTPLGLRDRTMLELMYASG 182

Query: 204 LRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLLAMT--PIGK 252
           LR S+        +  N   ++    G+   +          +                 
Sbjct: 183 LRVSELVTLKTVEVGLNEGVVRVTGKGSKERLVPFGEVAHGWIERYLRDARPALLGARAA 242

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMAT 310
           +  F+      M   QF    K  A +A V  + S H +R   AT   + GA    +   
Sbjct: 243 DALFVTARGDGMTRQQFWNIIKRHAQQADVRVHLSPHTLRHAFATHLLNHGADLRVVQLL 302

Query: 311 YGWKTVDQAETYTKGADRIRL 331
            G   +   + YT  A R RL
Sbjct: 303 LGHSDISTTQIYTHVA-RERL 322


>gi|299065844|emb|CBJ37023.1| site-specific tyrosine recombinase [Ralstonia solanacearum CMR15]
          Length = 311

 Score =  136 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 52/309 (16%), Positives = 97/309 (31%), Gaps = 41/309 (13%)

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI----------I 103
           +    E + +P      ++              LA N+  ++                 +
Sbjct: 2   TQAAPETLPTPPSSTEAIQRFCDALWLED---GLARNTLDAYRRDLTLYAQWLAGRGKAL 58

Query: 104 RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163
            ++ D D            +       S+A +  T  +  F+WA+R+  V  +P   +  
Sbjct: 59  DQTEDADLSDYFAARHEDSL------ASTANRRRTVFKRFFQWALREHVVNADPTRLLPT 112

Query: 164 PKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN 219
            K+     +  ++  ++   +        G + R   E +  SGLR S+        +  
Sbjct: 113 AKQPPRVPQTLSEAQVEALIAAPDVDAPLGLRDRAMIELMYASGLRVSEIVALKTVEVGL 172

Query: 220 NIFSIKT--QKTGTIITVELP----DGFMKLLAMTPIGK---------ETFFINNDKQKM 264
           N   ++    K G    V       D   + L     G+         +  F+      M
Sbjct: 173 NEGVVRVIGGKGGKDRLVPFGAEAGDWLRRYLQDGHKGRTALLGQRTADALFVTARGDGM 232

Query: 265 NATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
               F    K  A +A ++   S H +R   AT   + GA    +    G   +   + Y
Sbjct: 233 TRQAFWYLIKRYAQRADIHAPLSPHTLRHAFATHLLNHGADLRVVQMLLGHADISTTQIY 292

Query: 323 TKGADRIRL 331
           T  A R RL
Sbjct: 293 THVA-RERL 300


>gi|297621664|ref|YP_003709801.1| Site-specific tyrosine recombinase XerC [Waddlia chondrophila WSU
           86-1044]
 gi|297376965|gb|ADI38795.1| Site-specific tyrosine recombinase XerC [Waddlia chondrophila WSU
           86-1044]
          Length = 301

 Score =  136 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 47/266 (17%), Positives = 93/266 (34%), Gaps = 26/266 (9%)

Query: 85  GSLAVNSRISF-------ESYFDQIIRKSGDFDYRKITTKHIR---SGVESRKHTPSSAI 134
            + + ++  ++       + + +Q  +   DF   +I  + IR   + + S+  +  + +
Sbjct: 19  KNASEHTIRNYAIDLNIFKQHLEQEWQSDEDFALNRIERRQIRGFLAMMNSKGASKRTIL 78

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GS 190
           + L+S+R  FKWA   + +  NP   +E PK +     P +   ++   S        GS
Sbjct: 79  RRLSSLRTFFKWAFANQLITSNPIEEIESPKLEKTIPTPLSYTQVEHLFSLPEIETLLGS 138

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELP----DGFMKLL 245
           + R   E    SGLR S+        +           K      + +         K L
Sbjct: 139 RDRCMMELFYSSGLRVSELVGLNKNDVDITTRLMKVRGKGKKERVIPVTHNAVYWIQKYL 198

Query: 246 AMTPIG-----KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISA 298
                          F+N    +++       FK    K+G+    + H +R   AT   
Sbjct: 199 RHPERKFSCEENHAIFLNKLGTRLSVRSVDRNFKRYLIKSGLGGNVTPHTIRHTIATHWL 258

Query: 299 DAGATAHELMATYGWKTVDQAETYTK 324
           + G     +    G +++     YT 
Sbjct: 259 ENGMDLKTIQTLLGHESLSSTTIYTH 284


>gi|326331272|ref|ZP_08197564.1| tyrosine recombinase XerD [Nocardioidaceae bacterium Broad-1]
 gi|325950905|gb|EGD42953.1| tyrosine recombinase XerD [Nocardioidaceae bacterium Broad-1]
          Length = 298

 Score =  136 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 51/268 (19%), Positives = 91/268 (33%), Gaps = 29/268 (10%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITT----------KHIRSGVESR-KHTPSSA 133
             LA N+  S+     +        D   +T            H+R G E     + +SA
Sbjct: 12  RGLAANTLSSYRRDLRRYAEFLAQQDVDDLTAVSEATVSGFLAHLREGSEEHPALSATSA 71

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-----SE 188
            + + ++R   K+AV    V  NP   V+ P+ +    +     D++             
Sbjct: 72  ARTVVAVRGFHKFAVADGLVEANPAGHVKPPRAEKRLPKALPLSDVEAILEAAGAPGTPL 131

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPDGFMKLLAM 247
             + R   E L  +G R S++    V  L      ++   K G    V +    ++ +  
Sbjct: 132 ALRDRALLEVLYGTGARISEAVGLDVDDLDRVDHVALLRGKGGKERIVPVGSYAIEAVEA 191

Query: 248 ----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSAT 295
                     +       F+N    +++           A +AG++K  S H +R   AT
Sbjct: 192 YLTRARPDLASARSGGALFLNARGGRLSRQSAWTVLTRAAERAGIDKDVSPHTLRHSFAT 251

Query: 296 ISADAGATAHELMATYGWKTVDQAETYT 323
              D GA    +    G  +V   + YT
Sbjct: 252 HLLDGGADVRVVQELLGHASVTTTQIYT 279


>gi|323154775|gb|EFZ40973.1| tyrosine recombinase XerD [Escherichia coli EPECa14]
          Length = 298

 Score =  136 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 43/270 (15%), Positives = 95/270 (35%), Gaps = 24/270 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGVESRKHTPSSAIQFLTS 139
            +LA N+  ++      ++             +    + + +      +  +S+ + L++
Sbjct: 19  KNLAENTLNAYRRDLSMMVEWLYHRGLTLATAQSDDLQALLAERLEGGYKATSSARLLSA 78

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195
           +R LF++  R+++   +P   +  PK      +  ++  +++             + +  
Sbjct: 79  VRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLIDQPLELRDKAM 138

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKET 254
            E L  +GLR S+     +  +      ++   K      V L +  +  L         
Sbjct: 139 LEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRP 198

Query: 255 FFIN----------NDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG 301
           + +N             Q+M    F    K  A  AG++    S H +R   AT   + G
Sbjct: 199 WLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHG 258

Query: 302 ATAHELMATYGWKTVDQAETYTKGA-DRIR 330
           A    +    G   +   + YT  A +R+R
Sbjct: 259 ADLRVVQMLLGHSDLSTTQIYTHVATERLR 288


>gi|304315042|ref|YP_003850189.1| site-specific recombinase/integrase [Methanothermobacter
           marburgensis str. Marburg]
 gi|302588501|gb|ADL58876.1| predicted site-specific recombinase/integrase [Methanothermobacter
           marburgensis str. Marburg]
          Length = 311

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 48/272 (17%), Positives = 97/272 (35%), Gaps = 25/272 (9%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESY----FDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           LI +Y       + + N+  ++ S     ++ ++ +   +D R++     R     ++  
Sbjct: 26  LIEDYLVELEIRNYSPNTIKTYRSIVKNFYEFLMEEDDLYDDRRVLRSFKRYIQYLKRDK 85

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-- 187
             +         V+ K+    E+  I+    V+ PKR     +   ++++ +  +     
Sbjct: 86  NVTQNYIYLVTVVIKKF---FEFSEIDCLQEVKAPKRTKSLPKSLNEDEVMRLINAVELS 142

Query: 188 ---------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
                      ++ RL    L  SGLR S+     V  +     +I+ +  G    + L 
Sbjct: 143 DDGSPIKRFIKTRDRLILSLLYSSGLRVSELVSLKVNDIDMGDRTIRIRGKGDKDRIVLF 202

Query: 239 DG-----FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRK 291
           D       ++ L+      E  F+N     +      +  K  A KAG+NK  + H +R 
Sbjct: 203 DESTRDLLVEYLSRRIHESEYLFLNRFGDPLTPRYVQMMIKNYARKAGINKKVTPHILRH 262

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYT 323
             AT     G     +    G   +   + YT
Sbjct: 263 SFATHLLKNGVDIRAIQQLLGHSNLSTTQIYT 294


>gi|167718388|ref|ZP_02401624.1| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei
           DM98]
          Length = 299

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 46/268 (17%), Positives = 88/268 (32%), Gaps = 22/268 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVESRKH-TPSSAIQFLTSM 140
             L+ N+  ++        +         +       +   + +R     +S+ + L+  
Sbjct: 22  HGLSRNTLDAYRRDLQLFAQWLAARHAASVDHASEPTLTEYIAARSDGKATSSNRRLSVF 81

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAF 196
           R  + WAVR+   A++P L +   K+        ++  ++   +        G + R   
Sbjct: 82  RRYYGWAVREHRAAVDPTLRIASAKQAPRFPSTLSEAQVEALLAAPDVDTPLGLRDRTML 141

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLLAM 247
           E +  SGLR S+        +  N   ++    G+   +          +          
Sbjct: 142 ELMYASGLRVSELVTLKTVEVGLNEGVVRVTGKGSKERLVPFGEVAHGWIERYLRDARPA 201

Query: 248 T--PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGAT 303
                  +  F+      M   QF    K  A +A V  + S H +R   AT   + GA 
Sbjct: 202 LLGARAADALFVTARGDGMTRQQFWNIIKRHAQQADVRVHLSPHTLRHAFATHLLNHGAD 261

Query: 304 AHELMATYGWKTVDQAETYTKGADRIRL 331
              +    G   +   + YT  A R RL
Sbjct: 262 LRVVQLLLGHSDISTTQIYTHVA-RERL 288


>gi|167618124|ref|ZP_02386755.1| site-specific tyrosine recombinase XerD [Burkholderia thailandensis
           Bt4]
          Length = 312

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 51/309 (16%), Positives = 97/309 (31%), Gaps = 26/309 (8%)

Query: 50  ALTGSTPKREYINSP--RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD---QIIR 104
           A +   P  E   SP  R   T++               L+ N+  ++        Q + 
Sbjct: 1   APSADRPADELAASPAWRDSRTSIDLFCDAMWLE---HGLSRNTLDAYRRDLQLFAQWLA 57

Query: 105 KSGDFDYRKITTKHIRSGVESRKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163
                   +     +   + +R     +S+ + L+  R  + WAVR+   A++P L +  
Sbjct: 58  ARHAVSLDRTERPMLEGYIAARSDGKATSSNRRLSVFRRYYGWAVREHRAAVDPTLRIAS 117

Query: 164 PKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN 219
            K+        ++  ++   +        G + R   E +  SGLR S+        +  
Sbjct: 118 AKQAPRFPSTLSEAQVEALLAAPDVDTPLGLRDRTMLELMYASGLRVSELVTLKTVEVGL 177

Query: 220 NIFSIKTQKTGTIITV---------ELPDGFMKLLAMT--PIGKETFFINNDKQKMNATQ 268
           N   ++    G+   +          +                 +  F+      M   Q
Sbjct: 178 NEGVVRVTGKGSKERLVPFGEVAHGWIERYLRDARPALLGARAADALFVTARGDGMTRQQ 237

Query: 269 FSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           F    K  A +A V  + S H +R   AT   + GA    +    G   +   + YT  A
Sbjct: 238 FWNIIKRHAQQADVRAHLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVA 297

Query: 327 DRIRLGIKN 335
                 +  
Sbjct: 298 RERLKALHA 306


>gi|284037325|ref|YP_003387255.1| tyrosine recombinase XerD [Spirosoma linguale DSM 74]
 gi|283816618|gb|ADB38456.1| tyrosine recombinase XerD [Spirosoma linguale DSM 74]
          Length = 305

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 49/280 (17%), Positives = 105/280 (37%), Gaps = 26/280 (9%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISF----ESYFDQIIRKSGDFDYRKITTK---HIRSG 122
            +  I+ ++       SLA NS  ++    E  ++ I+         ++T K   +    
Sbjct: 2   WQSYINAFKNYLKLERSLAENSVEAYLHDAEKLYEYILLTDPARTPMQVTEKELMNFLKY 61

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           +     +  S  + L+ ++  FK+ + +  +  +P   +E PK   +     +  +++  
Sbjct: 62  LGELGLSAHSQARMLSGIKSFFKYLLLEGLIERDPTQLLESPKLGRKLPDTLSFPEIEDM 121

Query: 183 KSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-VEL 237
            +        G++ R   E L  SGLR S+     + +       ++    G  +  V +
Sbjct: 122 LAAIDLSTPGGTRDRAMLEVLYSSGLRVSELLNLRLTNCFFTEGFVRVLGKGDKVRLVPI 181

Query: 238 PDGFMKL-----------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284
            +  M             L +    ++T F+N   ++++        K  A++ G+ K  
Sbjct: 182 GEDAMHYTRIYVEHVRQKLDVQKGDEDTIFLNLRGKQLSRISVFTTIKKLASEVGIKKTI 241

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           S H  R   AT   + GA    +    G +++   E YT 
Sbjct: 242 SPHTFRHSFATHLIEGGADLRAVQQMLGHESITTTEIYTH 281


>gi|162452703|ref|YP_001615070.1| site-specific recombinase [Sorangium cellulosum 'So ce 56']
 gi|161163285|emb|CAN94590.1| site-specific recombinase [Sorangium cellulosum 'So ce 56']
          Length = 323

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 51/280 (18%), Positives = 98/280 (35%), Gaps = 23/280 (8%)

Query: 71  LKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH------IRSGV 123
           L   +  Y        +LA  +  ++     +++  +       +              +
Sbjct: 30  LATWVDAYLDHLRVERALAPLTLEAYGHDLAKLVAHAEASGITTVEGLDQSLIGTYLVAL 89

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
                + SSA + L+++R   ++ +R+  +  +PC  VERP+      +  + +++    
Sbjct: 90  GQAGISASSAARHLSAVRGFVRFLLRERRIERDPCALVERPRVGRRLPKVLSFDEIALLI 149

Query: 184 SFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGTIITVELP 238
               +G+    + R     +  +GLR S+  R  +  +       +   K G    V L 
Sbjct: 150 EAPEQGTFKGLRDRAMLHVMYAAGLRVSEVVRLKLADIDRRKGIVMALGKGGKRRLVPLG 209

Query: 239 -------DGFMKLLAMTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287
                  D +++L A  P    T   F++     +            A   G+ K  S H
Sbjct: 210 EPALAAIDAYLELRATHPRSAATQVLFLSPRGGPLTRQAVWKLLGGYARAVGIAKPSSPH 269

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
            +R   AT   + GA    + A  G   V   E YT  AD
Sbjct: 270 KLRHSFATHLLEGGADLRSVQALLGHANVVTTEIYTHLAD 309


>gi|300114666|ref|YP_003761241.1| tyrosine recombinase XerD [Nitrosococcus watsonii C-113]
 gi|299540603|gb|ADJ28920.1| tyrosine recombinase XerD [Nitrosococcus watsonii C-113]
          Length = 305

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 46/274 (16%), Positives = 94/274 (34%), Gaps = 23/274 (8%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESRKHTPSSAIQFLTSM 140
            LA N+  ++    +   R         I  +        +          S  + ++S+
Sbjct: 28  GLAENTLAAYRRDLEGFSRWLDSQGRALIRAQREDVLAYLAHRLEGGGKSRSVARSVSSL 87

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAF 196
           R  +++ +R++    +P   VE P+         ++ +++   +      S G + R   
Sbjct: 88  RRFYRYLMREKIRDSDPSDRVELPRLGRLLPESLSEGEVEALLAAPKTNDSLGLRDRTML 147

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT--------IITVELPDGFMKLLAMT 248
           E L  +GLR S+     +  L +    ++    G          + +   D +       
Sbjct: 148 ETLYATGLRVSELVNLTLSQLNSRQGVVRLSGKGNKERLVPLGEVALSWLDRYCHEARPG 207

Query: 249 PIGKET---FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGAT 303
            +  +     F+      M+   F    K  A ++G+ K  S H +R   AT   + GA 
Sbjct: 208 LVRGQLNEILFLTRRGGAMSRQAFWYLIKRYARQSGIQKTLSPHTLRHAFATHLLNHGAD 267

Query: 304 AHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
              +    G   +   + YT  A R RL   + +
Sbjct: 268 LRVVQILLGHADLSTTQIYTHVA-RARLQQLHQQ 300


>gi|209919452|ref|YP_002293536.1| putative phage integrase [Escherichia coli SE11]
 gi|209912711|dbj|BAG77785.1| putative phage integrase [Escherichia coli SE11]
          Length = 342

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 63/333 (18%), Positives = 114/333 (34%), Gaps = 36/333 (10%)

Query: 6   RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHE---STFIPAYMSALTGSTPKREYIN 62
           +LPP V K      K  YYF+      I L   ++   +     Y   L  +        
Sbjct: 12  KLPPRVYKN-----KYSYYFKPTPRECITLGKINDLSIAQVWVKYEEILNDAIDV----- 61

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122
                  T   L +++  S ++  L   ++  +  +  +++   G      I   H+R  
Sbjct: 62  ------MTFSKLWNKFLNSTYYLELGQRTQKDYLQHQKKLLAAFGKMKADNIKPAHVRLY 115

Query: 123 VESRKHT-PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
           ++ R     + A     SM  +F+W   + YV  NPC  V +   K      +T E+   
Sbjct: 116 MDKRGLKSKTQANHEKASMSRVFRWGYERGYVKGNPCQGVSKFSLKPRDYY-FTDEE--- 171

Query: 182 FKSFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
           + + + E S   + A E       R  D  +     + +    I+  KTG     +  + 
Sbjct: 172 YIAIYQEASPVLQCAMEIAYLCATRIGDIRKLTWDQVMSKGLFIQQGKTGKKQIKQYSER 231

Query: 241 FM-KLLAMTPIGKETF-FINNDKQKMNATQFSIWFKAKATKAG------VNKSAHGVRKF 292
               L     +G + F   N    + + T F+  ++     A       +  + H + K 
Sbjct: 232 LTFALEQAKSLGGQHFVVCNKYGGQYSYTGFNDIWRKARAAASEKLGYPITGTFHDL-KA 290

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKG 325
                 D   ++ E     G KT  Q  TY + 
Sbjct: 291 KGISDYD--GSSKEKQLFSGHKTEAQVLTYDRK 321


>gi|167835679|ref|ZP_02462562.1| site-specific tyrosine recombinase XerD [Burkholderia thailandensis
           MSMB43]
          Length = 320

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 48/268 (17%), Positives = 89/268 (33%), Gaps = 22/268 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH---IRSGVESRKH-TPSSAIQFLTSM 140
             L+ N+  ++        +         +       +   + +R     +S+ + L+  
Sbjct: 43  HGLSRNTLDAYRRDLQLFAQWLAARHAASLDRAERPMLEGYIAARSDGKATSSNRRLSVF 102

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAF 196
           R  + WAVR+   A++P L +   K+        ++  ++   +        G + R   
Sbjct: 103 RRYYGWAVREHRTAVDPTLRIASAKQAPRFPSTLSEAQVEALLAAPDVDTPLGLRDRTML 162

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAM-------- 247
           E +  SGLR S+        +  N   ++ T K      V   +     +          
Sbjct: 163 ELMYASGLRVSELVTLKTVEVGLNEGVVRVTGKGSKERLVPFGEVAHGWIERYLRGARPA 222

Query: 248 --TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGAT 303
                  +  F+      M   QF    K  A +A V  + S H +R   AT   + GA 
Sbjct: 223 LLGARAADALFVTARGDGMTRQQFWNIIKRHAQQADVRVHLSPHTLRHAFATHLLNHGAD 282

Query: 304 AHELMATYGWKTVDQAETYTKGADRIRL 331
              +    G   +   + YT  A R RL
Sbjct: 283 LRVVQLLLGHSDISTTQIYTHVA-RERL 309


>gi|91202903|emb|CAJ72542.1| similar to site-specific tyrosine recombinase [Candidatus Kuenenia
           stuttgartiensis]
          Length = 298

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 38/272 (13%), Positives = 94/272 (34%), Gaps = 18/272 (6%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYF-DQIIRKSGD-----FDYRKITTKHIRSGV 123
           ++  I  Y        + +  +  ++ +     +    G+         ++  +   + +
Sbjct: 10  IQRFIDRYLAYIENDRNYSPQTLRAYRNDLGQYLSFLKGEGCTDLAGVTRLQLRKYLAFL 69

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
           + +  + ++  + L S+R L+K+  +   +  NP   ++ PK   +     +  D +   
Sbjct: 70  KKKNPSKTTVARKLASIRSLYKFLCQHGILEYNPVEQIKTPKTDKKLPGFMSVNDTEILL 129

Query: 184 SFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---- 235
           +        G + +   E L  +G+R S+     +  +  +   +K +  G+   +    
Sbjct: 130 NQPDTCNLSGLRDKAIMETLYSTGMRVSELVGINIADIDFHSGIVKVRGKGSKERILPVG 189

Query: 236 -ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292
               +     L       E  F+N    ++     +   +    KA ++   S H  R  
Sbjct: 190 NHALNAIQLYLEKRKADNEALFLNKFHGRLTERSVARMIEKYMKKAAMHLRVSPHTFRHS 249

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324
            AT   D GA    +    G  ++   + YT 
Sbjct: 250 FATHLLDNGADLRAVQEFLGHSSLSTTQIYTH 281


>gi|53725157|ref|YP_102186.1| site-specific tyrosine recombinase XerD [Burkholderia mallei ATCC
           23344]
 gi|121601112|ref|YP_992015.1| site-specific tyrosine recombinase XerD [Burkholderia mallei SAVP1]
 gi|161723208|ref|YP_107488.2| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei
           K96243]
 gi|52428580|gb|AAU49173.1| tyrosine recombinase XerD [Burkholderia mallei ATCC 23344]
 gi|121229922|gb|ABM52440.1| tyrosine recombinase XerD [Burkholderia mallei SAVP1]
          Length = 305

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 46/268 (17%), Positives = 88/268 (32%), Gaps = 22/268 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVESRKH-TPSSAIQFLTSM 140
             L+ N+  ++        +         +       +   + +R     +S+ + L+  
Sbjct: 28  HGLSRNTLDAYRRDLQLFAQWLAARHAASVDHASEPTLTEYIAARSDGKATSSNRRLSVF 87

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAF 196
           R  + WAVR+   A++P L +   K+        ++  ++   +        G + R   
Sbjct: 88  RRYYGWAVREHRAAVDPTLRIASAKQAPRFPSTLSEAQVEALLAAPDVDTPLGLRDRTML 147

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLLAM 247
           E +  SGLR S+        +  N   ++    G+   +          +          
Sbjct: 148 ELMYASGLRVSELVTLKTVEVGLNEGVVRVTGKGSKERLVPFGEVAHGWIERYLRDARPA 207

Query: 248 T--PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGAT 303
                  +  F+      M   QF    K  A +A V  + S H +R   AT   + GA 
Sbjct: 208 LLGARAADALFVTARGDGMTRQQFWNIIKRHAQQADVRVHLSPHTLRHAFATHLLNHGAD 267

Query: 304 AHELMATYGWKTVDQAETYTKGADRIRL 331
              +    G   +   + YT  A R RL
Sbjct: 268 LRVVQLLLGHSDISTTQIYTHVA-RERL 294


>gi|307942321|ref|ZP_07657672.1| putative integrase family protein [Roseibium sp. TrichSKD4]
 gi|307774607|gb|EFO33817.1| putative integrase family protein [Roseibium sp. TrichSKD4]
          Length = 356

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 61/347 (17%), Positives = 114/347 (32%), Gaps = 26/347 (7%)

Query: 17  RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP-TTLKWLI 75
           R GK   Y+R      ++  +      +  ++++        E  + P+ K   TL  L 
Sbjct: 14  RRGKWYVYYRANRHALVQ-GFDGTREELDKHLASPAILKLYSEIADRPKNKGFGTLGGLF 72

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSG-DFDYRKITTKHIRSGVESRKHT--PSS 132
             Y+    W  LA  ++  ++   D +  ++        I    I    +       P  
Sbjct: 73  EFYKTKERWKKLAPRTKADYQKVIDWLEERNRLKTPVIVIRPADIAMTRDKAAQDKFPKF 132

Query: 133 AIQFLTSMRVLFKWAVRQEY--VAINPCLSVERPKRKTEG-IRPWTKEDMQQFKSFWSEG 189
           + + L  +   F   V   Y  +  N  L + R  + ++   R WT E+  +  S   + 
Sbjct: 133 SNETLALLSAAFSTGVEYGYAGLKTNSVLGIRRLHKNSKAANRRWTIEEWNRVWSVTPD- 191

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVELPDGFMKL 244
              ++      ++G R  D       HL+             +K      VE+P     L
Sbjct: 192 -HLKMVLGLARWTGARGQDIAVLRWDHLERQGETYTFLEYIAKKNQAECVVEIPASLNAL 250

Query: 245 LAMTPIGKETFFINNDKQKMNAT--QFSIW--------FKAKATKAGVNKSAHGVRKFSA 294
           L        T   N+  +   +      +W        FK      G + + HG+R   A
Sbjct: 251 LQSETRLTLTICKNSKGRPYPSENAMRKVWQEFKASAEFKEACPS-GQDLTLHGLRVTYA 309

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
           +   +   T  E+    G K+    + Y +GAD  +   K    +  
Sbjct: 310 SELREKDFTDEEIARAIGDKSTAMGKHYGRGADARKFARKVREAMDR 356


>gi|120602477|ref|YP_966877.1| tyrosine recombinase XerD [Desulfovibrio vulgaris DP4]
 gi|120562706|gb|ABM28450.1| tyrosine recombinase XerD subunit [Desulfovibrio vulgaris DP4]
 gi|311233936|gb|ADP86790.1| tyrosine recombinase XerD [Desulfovibrio vulgaris RCH1]
          Length = 321

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 48/267 (17%), Positives = 91/267 (34%), Gaps = 21/267 (7%)

Query: 85  GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVESRKHTP--SSAIQFLTS 139
             LA N+  ++ +   ++   + + G               V+ R+      +  + L +
Sbjct: 39  RGLAENTLAAYSADLIELQVFLEERGCLLAEVDEQTLFMHVVDLRRRGMAGRTLARHLAT 98

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLA 195
           +R  F +AV +  +  +P L +E PK         T+++M    +        G + R  
Sbjct: 99  LRGFFAFAVGEGELEADPALFLENPKLARNLPDVLTRDEMATILARPDLSDRLGFRDRTM 158

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLLA 246
            E +  +GLR S+ C             ++    G    +          +         
Sbjct: 159 LELMYAAGLRVSELCALRPLDFDAQAGVVRVFGKGAKERIVPVHHVSCALVTAYLRDWRP 218

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATA 304
                +   F+N   + ++        K    +AG++K  S H  R   AT   + GA  
Sbjct: 219 AFSPVEPAMFLNRSGKGLSRQAVWKVVKRHVAEAGIHKDISPHTFRHSFATHLLEGGADL 278

Query: 305 HELMATYGWKTVDQAETYTK-GADRIR 330
             +    G   +   E YT   ADR+R
Sbjct: 279 RSVQLLLGHADISATEIYTHVQADRLR 305


>gi|78045063|ref|YP_359695.1| phage integrase family site specific recombinase [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77997178|gb|ABB16077.1| site-specific recombinase, phage integrase family [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 320

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 44/284 (15%), Positives = 97/284 (34%), Gaps = 15/284 (5%)

Query: 56  PKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT 115
           PK   +  P     T + L+ E+         +  +   +  + ++   +         +
Sbjct: 2   PKSNVLRLPLSLKITWQDLLDEFILVKEAEGRSARTIHDYRFHIERFFNRFPHALESYTS 61

Query: 116 TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
            +       + K +PS+  + L  ++  F W  ++ Y+  NP   ++R K     IR  +
Sbjct: 62  LRQSVLKYFTEKASPSTRNKRLAHLKAFFSWCAKEGYIPANPAEGIKRAKEDITNIRHVS 121

Query: 176 KEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN--IFSIKTQ-- 227
            E++++      +    G +        + +G+R  +  +     L        I+ +  
Sbjct: 122 LEEVKKLLQQPDKKTYTGLRDYCLMLVQIDTGVRPGELLQVRGSDLSLESREIRIRPEVA 181

Query: 228 KTGTIITVELPD----GFMKLLAMTP---IGKETFFINNDKQKMNATQFSIWFKAKATKA 280
           KT    T+ +         + L + P         F + +   +N   ++   +    KA
Sbjct: 182 KTRIGRTLIITPFTAQQIARFLRIRPEHWGDDVPLFASENGITLNENDWAKRVRQYCKKA 241

Query: 281 GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           GV  + +G+R   A     AG     L    G   +     Y +
Sbjct: 242 GVKVTPYGLRHTFAIEFLKAGGDPFSLQRILGHTDLTMTRRYVR 285


>gi|260599234|ref|YP_003211805.1| site-specific tyrosine recombinase XerD [Cronobacter turicensis
           z3032]
 gi|260218411|emb|CBA33498.1| Tyrosine recombinase xerD [Cronobacter turicensis z3032]
          Length = 298

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 44/270 (16%), Positives = 95/270 (35%), Gaps = 24/270 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESR---KHTPSSAIQFLTS 139
            +LA NS  ++      ++            + +  +++ +  R    +  +S  + L++
Sbjct: 19  RNLAENSLSAYRRDLSMVVEWLHHRGLSLATVQSGDLQTLLAERVEGGYKATSTARMLSA 78

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195
           +R LF+   R++    +P   +  PK      +  ++  + +             + +  
Sbjct: 79  VRRLFQHLYREKIRDDDPSALLASPKLPQRLPKDLSEAQVDRLLQAPTVEEPIELRDKAM 138

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKET 254
            E L  +GLR S+     +  +      ++   K      V L +  +  +         
Sbjct: 139 LEVLYATGLRVSELVGLTMSDVSLRQGVVRVIGKGNKERLVPLGEEAVYWVEQYLTHGRP 198

Query: 255 FFIN----------NDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG 301
           + +N          N  ++M    F    K  A  AG++    S H +R   AT   + G
Sbjct: 199 WLLNGQSLDILFPSNRARQMTRQTFWHRIKHYAQLAGIDSEKLSPHVLRHAFATHLLNHG 258

Query: 302 ATAHELMATYGWKTVDQAETYTKGA-DRIR 330
           A    +    G   +   + YT  A +R+R
Sbjct: 259 ADLRVVQMLLGHSDLSTTQIYTHVATERLR 288


>gi|269213994|ref|ZP_05983350.2| tyrosine recombinase XerD [Neisseria cinerea ATCC 14685]
 gi|269144753|gb|EEZ71171.1| tyrosine recombinase XerD [Neisseria cinerea ATCC 14685]
          Length = 308

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 52/278 (18%), Positives = 101/278 (36%), Gaps = 23/278 (8%)

Query: 73  WLISEYRKSAHWGS--LAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKH 128
            LI    ++  W    L+ N+  S+    ++I R+        R      + + V     
Sbjct: 21  DLIDRLLETL-WLDRRLSRNTLESYRRDLEKIARRLSLCGQTLRDADESDLAAAVYVAGE 79

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF--- 185
             SS  + L++ + L+ W  R+     NP   ++ PK         T++ + +  S    
Sbjct: 80  ERSSQARALSACKRLYIWMEREGMRTDNPTRLLKPPKIDKNIPTLITEQQISRLLSAPDT 139

Query: 186 -WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
               G + +   E +  +GLR S++ R    +L  +   I T   G    + +P G   +
Sbjct: 140 DTPHGLRDKALLELMYATGLRVSEAVRLSFGNLDLDRGCITTLGKGNKQRI-VPMGRESV 198

Query: 245 ------------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRK 291
                       L +     +  F++  K  ++     +  K  A++AG+   S H +R 
Sbjct: 199 YWVERYYKEARPLLLKGRSCDALFVSQKKTGISRQLAWMIVKEYASQAGIEHISPHSLRH 258

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             AT     G     +    G   ++  + YT  A+  
Sbjct: 259 AFATHLVQHGLDLRVVQDMLGHADLNTTQIYTHVANVR 296


>gi|15803430|ref|NP_289463.1| site-specific tyrosine recombinase XerD [Escherichia coli O157:H7
           EDL933]
 gi|15833020|ref|NP_311793.1| site-specific tyrosine recombinase XerD [Escherichia coli O157:H7
           str. Sakai]
 gi|168760022|ref|ZP_02785029.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4501]
 gi|217327493|ref|ZP_03443576.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. TW14588]
 gi|34222933|sp|Q8X574|XERD_ECO57 RecName: Full=Tyrosine recombinase xerD
 gi|12517420|gb|AAG58022.1|AE005519_8 site-specific recombinase [Escherichia coli O157:H7 str. EDL933]
 gi|13363238|dbj|BAB37189.1| site-specific recombinase [Escherichia coli O157:H7 str. Sakai]
 gi|189369440|gb|EDU87856.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4501]
 gi|209760580|gb|ACI78602.1| site-specific recombinase [Escherichia coli]
 gi|217319860|gb|EEC28285.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. TW14588]
 gi|326339022|gb|EGD62837.1| Tyrosine recombinase XerD [Escherichia coli O157:H7 str. 1044]
          Length = 298

 Score =  136 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 40/265 (15%), Positives = 90/265 (33%), Gaps = 23/265 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGVESRKHTPSSAIQFLTS 139
            +LA N+  ++      ++             +    + + +      +  +S+ + L++
Sbjct: 19  KNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGYKATSSARLLSA 78

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195
           +R LF++  R+++   +P   +  PK      +  ++  +++             + +  
Sbjct: 79  VRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLIDQPLELRDKAM 138

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKET 254
            E L  +GLR S+     +  +      ++   K      V L +  +  L         
Sbjct: 139 LEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRP 198

Query: 255 FFIN----------NDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG 301
           + +N             Q+M         K  A  AG++    S H +R   AT   + G
Sbjct: 199 WLLNGVSIDVLFPSQRAQQMTRQTLWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHG 258

Query: 302 ATAHELMATYGWKTVDQAETYTKGA 326
           A    +    G   +   + YT  A
Sbjct: 259 ADLRVVQMLLGHSDLSTTQIYTHVA 283


>gi|225620975|ref|YP_002722233.1| site-specific recombinase XerD [Brachyspira hyodysenteriae WA1]
 gi|225215795|gb|ACN84529.1| site-specific recombinase XerD [Brachyspira hyodysenteriae WA1]
          Length = 297

 Score =  136 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 55/265 (20%), Positives = 96/265 (36%), Gaps = 28/265 (10%)

Query: 85  GSLAVNSRISFES----YFDQIIRKSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFL 137
             L+ N+  S++     Y D + R        K T K I   +  RK       +  +  
Sbjct: 10  KGLSSNTLESYKRDIVIYLDFLSRN--KKSILKATRKDIEKFLSERKEQGSKSRTVARNK 67

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPR 193
            S+  L+K+ V + Y++ NP  ++E  + K       T  ++    +       +G + +
Sbjct: 68  VSIVNLYKFLVMENYISKNPTDNLEVIRLKRVLPESLTDTEVDDLLAVHNEKTDKGLRDK 127

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKLLAMTP-- 249
             FE +  SGLR S+ C   +  +  +     I   K      V + D  + +L      
Sbjct: 128 AIFELMYSSGLRVSEICSLKIDDIFFEGKYLKI-CGKGKRERIVPINDRALDILQRYIQT 186

Query: 250 ------IGKET--FFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISAD 299
                  GK+T   F+N    K++        K    K+ + K+   H +R   AT    
Sbjct: 187 SRVIMVKGKKTSELFLNFRGDKISRVGIWKIVKEAMKKSKIEKNIYPHTLRHSFATHLIQ 246

Query: 300 AGATAHELMATYGWKTVDQAETYTK 324
            GA    +    G   +   E YT 
Sbjct: 247 HGADLRAVQRMLGHSDITTTEIYTH 271


>gi|229170493|ref|ZP_04298144.1| Site-specific recombinase, phage integrase [Bacillus cereus AH621]
 gi|228612963|gb|EEK70137.1| Site-specific recombinase, phage integrase [Bacillus cereus AH621]
          Length = 352

 Score =  136 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 60/320 (18%), Positives = 117/320 (36%), Gaps = 43/320 (13%)

Query: 53  GSTPKREYINSPRK----KPTTLKWLISEYRKSAHWGSLAVNSRISFE---SYFDQIIRK 105
           G+  KR+     ++       T+  L  ++  +      A  +   ++    YF   +  
Sbjct: 7   GTVSKRKGKRVKKELRTFTTHTIDDLFEKFYHAKVAEGRAERTLHQYKENFRYFTYFLDY 66

Query: 106 SG-DFDYRKITTKHIRSGVESRKH--------------------TPSSAIQFLTSMRVLF 144
            G   +   ITT  IR+ V   K+                    +PS+    L ++RV+F
Sbjct: 67  KGLSRNIDTITTDVIRNYVVFMKNEKIQFEDHNYKPSDCKKVGLSPSTINTRLKTLRVMF 126

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLL 200
           ++ + +E +  NP   V+      E I   T +++++     ++ S    +  +    LL
Sbjct: 127 RFLIDEELMESNPMKQVKDVNEPQEEIAVLTVDELRRLLDVPNKRSYSDFRNYVIMNLLL 186

Query: 201 YSGLRCSDSCRAGVQHLQ--NNIFSIK--TQKTGTIITVELPDGFMKLLAMTPIGKE--- 253
            + LR S++    V  +     + +++    K+     V + +    LL       E   
Sbjct: 187 DTFLRISEALSLTVNDIDLSTKVITVRATVAKSRKARIVPIKNTTANLLKDLIKENEEFE 246

Query: 254 --TFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMA 309
               FI N +++M+   F    K  A + G+ K    H  R   AT+  +AG     L  
Sbjct: 247 TDHVFITNYEEQMDRNHFRKRLKGYAKETGITKNVHPHLFRHTGATMFLEAGGDIRHLQM 306

Query: 310 TYGWKTVDQAETYTKGADRI 329
             G   +     YT  + + 
Sbjct: 307 LLGHADLRMVMRYTHLSKQA 326


>gi|308234475|ref|ZP_07665212.1| integrase family protein [Atopobium vaginae DSM 15829]
 gi|328944068|ref|ZP_08241533.1| tyrosine recombinase XerD [Atopobium vaginae DSM 15829]
 gi|327492037|gb|EGF23811.1| tyrosine recombinase XerD [Atopobium vaginae DSM 15829]
          Length = 337

 Score =  136 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 42/294 (14%), Positives = 101/294 (34%), Gaps = 34/294 (11%)

Query: 65  RKKPTTLKWLISEYRKS-----AHWGSLAVNSRISFE----SYFDQIIRKSGDF-DYRKI 114
           +    +    + +  +S         +L+ N+  ++E    +Y   +I+ S D  D    
Sbjct: 27  KPDDDSYSAYVQQLMESFIQHLMTTQNLSPNTTRAYETDLKAYVRWLIKNSYDLLDISHK 86

Query: 115 TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
             +   + + + ++   +  + L+++R  +KW VR+     +   ++  PK         
Sbjct: 87  QLRSYLAQLYAARYASRTINRHLSAIRAWYKWLVRKGLTKKDSAAALASPKIPKTLPHVL 146

Query: 175 TKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKT 229
           ++  +++  +   E    G + R   E L  +G R S++    V  +  +   ++   K 
Sbjct: 147 SESSIEKLLATCQEDTVCGLRDRALLELLYATGCRISEAAHLCVSDISFDSKQVRLFGKG 206

Query: 230 GTIITVELPDGFMKLLA-----------------MTPIGKETFFINNDKQKMNATQFSIW 272
                V +     ++L                        +  FI+   + M+       
Sbjct: 207 SKERIVPIYPECARILHMYLTTARPVLLSKQKNQAQAQTNQHVFISTRGKAMSDQALRYV 266

Query: 273 FKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           F+     + +    + H +R   AT     GA    +    G  ++   + YT 
Sbjct: 267 FEHYMRLSHLQEIATPHTMRHSFATELLSHGADLRSVQELLGHASLATTQIYTH 320


>gi|254884996|ref|ZP_05257706.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|254837789|gb|EET18098.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
          Length = 407

 Score =  136 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 87/224 (38%), Gaps = 20/224 (8%)

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR--PWTKEDMQQFKSFWSEGS 190
           A       + + ++A+  + +  +PC SV   K  ++ +R    + E++Q+  +   +  
Sbjct: 190 AKSIYQRFKKVIRYAIDHDVMLKDPCKSVT-CKVDSQMLRKDVLSPEEIQKLAACHYDNE 248

Query: 191 QP--RLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTG-----TIITVELPDGF 241
            P  R AF F LY GLR  D      +++   N +   +  KT      + + + L DG 
Sbjct: 249 NPNVRRAFIFCLYCGLRFCDVKDLTYKNVDYANRLLKFEQSKTKGHSASSGVVIPLNDGL 308

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
           + ++  TP  K     +               K    +AG++K  S H  R   A    +
Sbjct: 309 LSIIGETPADKNCLIFDLP----TYESCCKSVKRWVKRAGIDKHISWHCARHSFAVNILN 364

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343
            GA    + +  G   +   E YT+  D  +L  +    +  + 
Sbjct: 365 NGANIKTVASLLGHSGLKHTEKYTRAVD--KLKEEAINSLPELK 406


>gi|303236694|ref|ZP_07323275.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
 gi|302483198|gb|EFL46212.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
          Length = 407

 Score =  136 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 58/312 (18%), Positives = 107/312 (34%), Gaps = 45/312 (14%)

Query: 34  RLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG-SLAVNSR 92
           RL       F+  Y + +   T K   +   +      K  + EY     +     + ++
Sbjct: 114 RLKKDRSINFLDYYQAYIDSYTKK--DLRMIKIALNRFKDFLKEYYPLYEFSIKPDLITK 171

Query: 93  ISFESYFDQI-IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQE 151
              E + + +  R  G+                        A       + + ++A+  E
Sbjct: 172 EMMERFVEYLQSRSVGE-----------------------GAKSIYQRFKKVVRYAIDHE 208

Query: 152 YVAINPCLSVERPKRKTEGIR--PWTKEDMQQFKSFWSEGSQP--RLAFEFLLYSGLRCS 207
            +  +PC  V   K   + +R    + +++Q       E   P  R AF   LY GLR  
Sbjct: 209 VMLKDPCKGV-VCKVDEQILRKDVLSMDEIQSLIQCHYENENPNVRRAFILCLYCGLRFC 267

Query: 208 DSCRAGVQHLQ--NNIFSIKTQKTG-----TIITVELPDGFMKLLAMTPIGKETFFINND 260
           D      +++   N++   +  KT      + + + L DG + L+   P   +T   N  
Sbjct: 268 DVKDLTYKNIDYTNHLLKFEQNKTKGHSANSGVVIPLNDGLLSLIGEAPEDLDTSIFNLP 327

Query: 261 KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
                        K    +AG+NK  S H  R   A    + GA    + +  G   +  
Sbjct: 328 ----TYESCCKSVKRWVKRAGINKHISWHCARHSFAVNILNNGANIKTVASLLGHSGLKH 383

Query: 319 AETYTKGADRIR 330
            E YT+  D+++
Sbjct: 384 TEKYTRAVDKLK 395


>gi|66046068|ref|YP_235909.1| Phage integrase:Phage integrase, N-terminal SAM-like [Pseudomonas
           syringae pv. syringae B728a]
 gi|63256775|gb|AAY37871.1| Phage integrase:Phage integrase, N-terminal SAM-like [Pseudomonas
           syringae pv. syringae B728a]
          Length = 344

 Score =  135 bits (341), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 57/331 (17%), Positives = 117/331 (35%), Gaps = 26/331 (7%)

Query: 11  VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSAL--TGSTPKREYINSPRKKP 68
           + K + R G + YY+  G   R  +P   +      Y  A+       K    ++  ++ 
Sbjct: 14  LRKRKQRSGVVYYYYDIGGSPRKEIPLGSD------YGMAIVEYAKLEKSRTSSALVQQV 67

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESR 126
            T  ++  +Y       + +  ++        Q+++   D       I  +H+   +  R
Sbjct: 68  LTFAYVAQKYMIEV-VPTKSPATQKDNARELKQLLKFFDDPPAPLEAIEPQHVVQYLRQR 126

Query: 127 KHT-PSSAIQFLTSMRVLFKWAVRQEYVA-INPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
             T P  A +    +  ++ +A    Y A  NPC  V+  K          +++M     
Sbjct: 127 GKTAPVRANREKALLSAIWNFARSAGYTALANPCAGVKGHKEVGRDHYI--EDEMFALVY 184

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
             +E    R A +    +G R +D+ +   + +++    ++  KT     +E+      +
Sbjct: 185 GHAE-QPLRDALDLFYLTGQRIADTLKMDERDIRDGRLWVQQGKTNAKRRIEITGELKVV 243

Query: 245 LAMTPIGKE-------TFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSA 294
           +      KE          + ++ Q M ++     F A    AGV K       +R  + 
Sbjct: 244 IDRIMTRKEGHRIRTSRLIVMDNGQPMTSSMLRGRFDAAREAAGVEKGEFQMRDLRAKAG 303

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKG 325
           T  A++     +     G  TV   E Y + 
Sbjct: 304 TDKAESSGDILQARDQLGHTTVVMTENYIRK 334


>gi|16761825|ref|NP_457442.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|16766345|ref|NP_461960.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|29143312|ref|NP_806654.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|62181554|ref|YP_217971.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|161615991|ref|YP_001589956.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|167550072|ref|ZP_02343829.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|167994107|ref|ZP_02575199.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|168231149|ref|ZP_02656207.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|168236103|ref|ZP_02661161.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|168261794|ref|ZP_02683767.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|168463788|ref|ZP_02697705.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|194446221|ref|YP_002042295.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194470177|ref|ZP_03076161.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194471635|ref|ZP_03077619.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194738371|ref|YP_002115993.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197249597|ref|YP_002147956.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197265258|ref|ZP_03165332.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|198244272|ref|YP_002217021.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|200387943|ref|ZP_03214555.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|205353968|ref|YP_002227769.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|207858307|ref|YP_002244958.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|213051988|ref|ZP_03344866.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213425823|ref|ZP_03358573.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213646964|ref|ZP_03377017.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|213857737|ref|ZP_03384708.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|224584833|ref|YP_002638631.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|238909843|ref|ZP_04653680.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|60416276|sp|P0A2P6|XERD_SALTY RecName: Full=Tyrosine recombinase xerD
 gi|60416277|sp|P0A2P7|XERD_SALTI RecName: Full=Tyrosine recombinase xerD
 gi|25299270|pir||AB0872 site-specific integrase/recombinase [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16421595|gb|AAL21919.1| site-specific recombinase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|16504127|emb|CAD02874.1| site-specific integrase/recombinase [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29138946|gb|AAO70514.1| site-specific integrase/recombinase [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|62129187|gb|AAX66890.1| recombinase, site-specific [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|161365355|gb|ABX69123.1| hypothetical protein SPAB_03791 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194404884|gb|ACF65106.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194456541|gb|EDX45380.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194457999|gb|EDX46838.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194713873|gb|ACF93094.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|195633587|gb|EDX52001.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|197213300|gb|ACH50697.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197243513|gb|EDY26133.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|197290855|gb|EDY30209.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|197938788|gb|ACH76121.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|199605041|gb|EDZ03586.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|205273749|emb|CAR38744.1| site-specific integrase/recombinase [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205324693|gb|EDZ12532.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|205327977|gb|EDZ14741.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|205334414|gb|EDZ21178.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|205349044|gb|EDZ35675.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|206710110|emb|CAR34465.1| site-specific integrase/recombinase [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|224469360|gb|ACN47190.1| tyrosine recombinase [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|261248176|emb|CBG26012.1| Tyrosine recombinase xerD [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267995198|gb|ACY90083.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301159600|emb|CBW19119.1| Tyrosine recombinase xerD [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312914065|dbj|BAJ38039.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|321225719|gb|EFX50773.1| Tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
 gi|322613442|gb|EFY10383.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322621034|gb|EFY17892.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322624098|gb|EFY20932.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322628163|gb|EFY24952.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322633282|gb|EFY30024.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322636140|gb|EFY32848.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322639478|gb|EFY36166.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322647589|gb|EFY44078.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322648773|gb|EFY45220.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322653828|gb|EFY50154.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322657934|gb|EFY54202.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322664037|gb|EFY60236.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322668952|gb|EFY65103.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322673054|gb|EFY69161.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322677955|gb|EFY74018.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322681131|gb|EFY77164.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322687939|gb|EFY83906.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|322716035|gb|EFZ07606.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
 gi|323131400|gb|ADX18830.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|323194865|gb|EFZ80052.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323196616|gb|EFZ81764.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323202684|gb|EFZ87724.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323207829|gb|EFZ92775.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323212619|gb|EFZ97436.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323214898|gb|EFZ99646.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323222629|gb|EGA06994.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323225092|gb|EGA09344.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323230614|gb|EGA14732.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323235035|gb|EGA19121.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323239074|gb|EGA23124.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323244568|gb|EGA28574.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323247183|gb|EGA31149.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323253334|gb|EGA37163.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323256359|gb|EGA40095.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323262465|gb|EGA46021.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323267439|gb|EGA50923.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323269157|gb|EGA52612.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
 gi|326624789|gb|EGE31134.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
 gi|326629082|gb|EGE35425.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 298

 Score =  135 bits (341), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 43/265 (16%), Positives = 90/265 (33%), Gaps = 23/265 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESR---KHTPSSAIQFLTS 139
            +LA N+  ++      ++                 +++ +  R    +  +S+ + L++
Sbjct: 19  RNLAENTLSAYRRDLSMVVAWLHHRGKTLATAQADDLQTLLAERVEGGYKATSSARLLSA 78

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195
           MR  F+   R++Y   +P   +  PK      +  ++  +++             + +  
Sbjct: 79  MRRFFQHLYREKYREDDPSAQLASPKLPQRLPKDLSEAQVERLLQAPLIDQPLELRDKAM 138

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKET 254
            E L  +GLR S+     +  +      ++   K      V L +  +  L         
Sbjct: 139 LEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRP 198

Query: 255 FFIN----------NDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG 301
           + +N             Q+M    F    K  A  AG++    S H +R   AT   + G
Sbjct: 199 WLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHG 258

Query: 302 ATAHELMATYGWKTVDQAETYTKGA 326
           A    +    G   +   + YT  A
Sbjct: 259 ADLRVVQMLLGHSDLSTTQIYTHVA 283


>gi|167893119|ref|ZP_02480521.1| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei
           7894]
 gi|167917844|ref|ZP_02504935.1| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei
           BCC215]
 gi|237811111|ref|YP_002895562.1| tyrosine recombinase XerD [Burkholderia pseudomallei MSHR346]
 gi|254296371|ref|ZP_04963828.1| tyrosine recombinase XerD [Burkholderia pseudomallei 406e]
 gi|157805883|gb|EDO83053.1| tyrosine recombinase XerD [Burkholderia pseudomallei 406e]
 gi|237504621|gb|ACQ96939.1| tyrosine recombinase XerD [Burkholderia pseudomallei MSHR346]
          Length = 333

 Score =  135 bits (341), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 53/307 (17%), Positives = 96/307 (31%), Gaps = 28/307 (9%)

Query: 52  TGSTPKREYINSPRKKPTTLKWLISE----YRKSAHW--GSLAVNSRISFESYFDQIIRK 105
            G  P             +  WL S         A W    L+ N+  ++        + 
Sbjct: 17  AGRAPAPPADRPVDALAASPAWLDSRASIDLFCDAMWLEHGLSRNTLDAYRRDLQLFAQW 76

Query: 106 SGDF---DYRKITTKHIRSGVESRKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV 161
                       +   +   + +R     +S+ + L+  R  + WAVR+   A++P L +
Sbjct: 77  LAARYAASVDHASEPTLTEYIAARSDGKATSSNRRLSVFRRYYGWAVREHRAAVDPTLRI 136

Query: 162 ERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217
              K+        ++  ++   +        G + R   E +  SGLR S+        +
Sbjct: 137 ASAKQAPRFPSTLSEAQVEALLAAPDVDTPLGLRDRTMLELMYASGLRVSELVTLKTVEV 196

Query: 218 QNNIFSIKTQKTGTIITV---------ELPDGFMKLLAMT--PIGKETFFINNDKQKMNA 266
             N   ++    G+   +          +                 +  F+      M  
Sbjct: 197 GLNEGVVRVTGKGSKERLVPFGEVAHGWIERYLRDARPALLGARAADALFVTARGDGMTR 256

Query: 267 TQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            QF    K  A +A V  + S H +R   AT   + GA    +    G   +   + YT 
Sbjct: 257 QQFWNIIKRHAQQADVRVHLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTH 316

Query: 325 GADRIRL 331
            A R RL
Sbjct: 317 VA-RERL 322


>gi|313159128|gb|EFR58503.1| tyrosine recombinase XerD [Alistipes sp. HGB5]
          Length = 298

 Score =  135 bits (341), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 51/261 (19%), Positives = 98/261 (37%), Gaps = 22/261 (8%)

Query: 85  GSLAVNSRISFESYFDQ----IIRKSGDFDYRKIT---TKHIRSGVESRKHTPSSAIQFL 137
             L+ N+  S+     Q    I+R+  D   RK+     +   + +  R    +S  + L
Sbjct: 23  KRLSQNTVESYMRDLRQFAHFILRQY-DVAPRKVEGTMIERYMAWLYDRGREKTSQARCL 81

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FWSEGSQPR 193
             +R  F + +  + +  +P   V+ PK         T +++    +      ++G +  
Sbjct: 82  CGIRSFFNFLLVNDQIETSPAEFVDTPKFGRPLPDILTTDEIDSIIATVDMRSTKGLRDS 141

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPD-------GFMKLL 245
              E L   GLR S+     +  L      I+   K      V + +        +++  
Sbjct: 142 AMLEVLYSCGLRVSELTSLRLSDLFFGEGYIRVIGKGNKQRLVPISNTARDKIQRYLEER 201

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGAT 303
                G+ET F+NN   ++         K    +AG++K  S H  R   AT   + GA+
Sbjct: 202 RSARSGEETVFLNNRGGQLTRVMVFTILKRAVERAGIDKHISPHTFRHSFATHLLEGGAS 261

Query: 304 AHELMATYGWKTVDQAETYTK 324
             ++    G +++   E YT 
Sbjct: 262 IRQVQEMLGHESILTTEIYTH 282


>gi|325299560|ref|YP_004259477.1| integrase family protein [Bacteroides salanitronis DSM 18170]
 gi|324319113|gb|ADY37004.1| integrase family protein [Bacteroides salanitronis DSM 18170]
          Length = 407

 Score =  135 bits (341), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 86/224 (38%), Gaps = 20/224 (8%)

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR--PWTKEDMQQFKSFWSEGS 190
           A       + + ++A+  + +  +PC  V   K  ++ +R    + E++Q+  +   +  
Sbjct: 190 AKSIFQRFKKVVRYAIDHDVMLKDPCKGVT-CKVDSQILRKDVLSPEEIQKLIACHYDNE 248

Query: 191 QP--RLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTG-----TIITVELPDGF 241
            P  R AF F LY GLR  D      +++   N +   +  KT      + + + L DG 
Sbjct: 249 NPTVRRAFIFCLYCGLRFCDVKDLTYKNVDYANRLLKFEQSKTKGHSASSGVVIPLNDGL 308

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
           + ++   P  K     +      +        K    +AG++K  S H  R   A    +
Sbjct: 309 LSIIGEAPADKNCLIFDLP----SYESCCKSVKRWVKRAGIDKHISWHCARHSFAVNILN 364

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343
            GA    + +  G   +   E YT+  D  +L  +    +  + 
Sbjct: 365 NGANIKTVASLLGHSGLKHTEKYTRAVD--KLKEEAINSLPELK 406


>gi|170018860|ref|YP_001723814.1| site-specific tyrosine recombinase XerD [Escherichia coli ATCC
           8739]
 gi|169753788|gb|ACA76487.1| tyrosine recombinase XerD [Escherichia coli ATCC 8739]
          Length = 298

 Score =  135 bits (341), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 43/270 (15%), Positives = 95/270 (35%), Gaps = 24/270 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGVESRKHTPSSAIQFLTS 139
            +LA N+  ++      ++             +    + + +      +  +S+ + L++
Sbjct: 19  KNLAENTLNAYCRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGYKATSSARLLSA 78

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195
           +R LF++  R+++   +P   +  PK      +  ++  +++             + +  
Sbjct: 79  VRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLIDQPLELRDKAM 138

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKET 254
            E L  +GLR S+     +  +      ++   K      V L +  +  L         
Sbjct: 139 LEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRP 198

Query: 255 FFIN----------NDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG 301
           + +N             Q+M    F    K  A  AG++    S H +R   AT   + G
Sbjct: 199 WLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHG 258

Query: 302 ATAHELMATYGWKTVDQAETYTKGA-DRIR 330
           A    +    G   +   + YT  A +R+R
Sbjct: 259 ADLRVVQMLLGHSDLSTTQIYTHVATERLR 288


>gi|327312659|ref|YP_004328096.1| site-specific recombinase, phage integrase family [Prevotella
           denticola F0289]
 gi|326944074|gb|AEA19959.1| site-specific recombinase, phage integrase family [Prevotella
           denticola F0289]
          Length = 407

 Score =  135 bits (341), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 60/361 (16%), Positives = 124/361 (34%), Gaps = 52/361 (14%)

Query: 16  TRHGKIIYYF--RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
             +G  + Y   +     ++ + +      +  Y+ A   +  +R+      +    ++ 
Sbjct: 41  DDNGNPVLYETGKMIGKPKVHIKHNRRKENLQLYLIAKPRTPAERQQNKETLELAAKIRA 100

Query: 74  LISE--------YR----KSAHWGSLAVN-----SRISFE-------SYFDQIIRKSGDF 109
              +        YR    +S ++           ++            + D +  +   +
Sbjct: 101 EREQQFKESMLGYRLKKDRSINFLDYYQAYIDSYTKKDLRMIKIALNRFKDFLKEQYPVY 160

Query: 110 DY-------RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162
           ++        K   KH    ++SR      A       + + ++A+  E +  +PC  V 
Sbjct: 161 EFSIKPELITKDMMKHFVEYLQSRSVG-EGAKSIYQRFKKVVRYAIDHEVMQKDPCKGV- 218

Query: 163 RPKRKTEGIR--PWTKEDMQQFKSFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQ 218
             K   + +R    + +++Q       E   P  R AF   LY GLR  D      +++ 
Sbjct: 219 VCKVDDQVLRKDVLSMDEIQSLIQCHYENENPNVRRAFILCLYCGLRFCDVKDLTYKNVD 278

Query: 219 --NNIFSIKTQKTG-----TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI 271
             N +   +  KT      + + + L DG + L+   P    +   N      +    S 
Sbjct: 279 YTNRLLKFEQNKTKGHSAHSGVIIPLNDGLLSLIGEAPEDLSSSIFNLP----SYESCSK 334

Query: 272 WFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             K    +AG+NK  S H  R   A    + GA    + +  G   +   E YT+  D++
Sbjct: 335 SVKRWVKRAGINKHISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVDKL 394

Query: 330 R 330
           +
Sbjct: 395 K 395


>gi|308187997|ref|YP_003932128.1| Tyrosine recombinase xerD [Pantoea vagans C9-1]
 gi|308058507|gb|ADO10679.1| Tyrosine recombinase xerD [Pantoea vagans C9-1]
          Length = 297

 Score =  135 bits (341), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 48/270 (17%), Positives = 99/270 (36%), Gaps = 24/270 (8%)

Query: 85  GSLAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
            +LA N+  S+      +       +        +  +   +      +  +S+ + L++
Sbjct: 18  RNLAQNTLSSYRQDLQTLTGWLTHHQLTLLSVTPLDLQQFLAERLEGGYKATSSARLLSA 77

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK----SFWSEGSQPRLA 195
           MR LF++  R++    +P   +  PK      +  ++  +++      +      + +  
Sbjct: 78  MRRLFQYLYREKLRPDDPSALLSAPKLPQRLPKDLSEAQVERLLQAPDTNIPLELRDKAM 137

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVEL-------PDGFMKLLAM 247
            E L  +GLR S+     +  +      ++   K      V L        + +M+    
Sbjct: 138 LEVLYATGLRVSELTGLTLSDISLRQGVVRVIGKGDKERLVPLGEEAVYWLEQYMEHGRP 197

Query: 248 TPIGKETF---FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG 301
             +  +T    F +N  Q+M    F    K  AT AG++    S H +R   AT   + G
Sbjct: 198 WLLNGQTLDVMFPSNRAQQMTRQTFWHRIKHYATLAGIDSEKLSPHVMRHAFATHLLNHG 257

Query: 302 ATAHELMATYGWKTVDQAETYTKGA-DRIR 330
           A    +    G   +   + YT  A +R+R
Sbjct: 258 ADLRVVQMLLGHSDLSTTQIYTHVATERLR 287


>gi|326799953|ref|YP_004317772.1| Tyrosine recombinase xerC [Sphingobacterium sp. 21]
 gi|326550717|gb|ADZ79102.1| Tyrosine recombinase xerC [Sphingobacterium sp. 21]
          Length = 298

 Score =  135 bits (341), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 53/279 (18%), Positives = 104/279 (37%), Gaps = 25/279 (8%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVE-- 124
            +  I ++++      SLA NS  ++    +++ + +      D   I T+ IR  +E  
Sbjct: 3   WESAIKDFKQYLRLERSLAKNSIEAYLHDVEKLRQHALYSHKKDPNAILTQDIRDFLEWI 62

Query: 125 -SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
            S   +  S  + L+ ++  + +   +  +  NP   +E P+   +     +  ++    
Sbjct: 63  YSLGMSAHSQARVLSGIKTFYHYLTLEGAMEHNPAALIEAPRLGRKLPDTLSIVEIDALI 122

Query: 184 SF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELP 238
                   EG + +   E L   GLR S+     + +L   I  I+ T K      + + 
Sbjct: 123 GAIDLSTPEGLRNKAMLEVLYSCGLRVSELVNLKISNLFLEIEFIRVTGKGNKERLIPIG 182

Query: 239 DGFMKLLAM-----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--S 285
              +K L +            P  ++  F+N     ++     +  K  A K G+ K  S
Sbjct: 183 HSAIKHLQIYLQHTRKEGPQKPGMEDYVFLNRRGSPLSRVMVFLIIKELAIKVGLKKTIS 242

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            H  R   AT   + GA    +    G +++   E YT 
Sbjct: 243 PHTFRHSFATHLIEGGADLRAVQDMLGHESISTTEIYTH 281


>gi|313199950|ref|YP_004038608.1| tyrosine recombinase xerc [Methylovorus sp. MP688]
 gi|312439266|gb|ADQ83372.1| tyrosine recombinase XerC [Methylovorus sp. MP688]
          Length = 298

 Score =  135 bits (341), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 44/270 (16%), Positives = 95/270 (35%), Gaps = 18/270 (6%)

Query: 73  WLISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR---SGVESRKH 128
             + +Y    +H   L+  +R +++     ++  +G+   + +T  HIR   + +  R  
Sbjct: 3   DYLVQYLDHLSHERRLSPLTRENYQRDLKVLLELNGEVPLQNMTGTHIRRHVATLHGRNL 62

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
              S  + L++ R  F++ +++   + NPC  +  PK         + +   Q  S   E
Sbjct: 63  GGRSIARMLSAWRGFFEFLIQRHGFSANPCQGIRAPKSPKSLPHALSPDQAVQLVSIDDE 122

Query: 189 GS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-ELPDGFMKL 244
            +   +     E    SGLR ++     +  L     +I     G    +  +    M  
Sbjct: 123 DTLAQRDHAMLELFYSSGLRLAELVNLNLDALNLGEGTITVTGKGNKTRIVPVGQHAMNA 182

Query: 245 LAM-------TPIGK-ETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSA 294
           L          PI      F++   ++++        +  A + G+N     H +R   A
Sbjct: 183 LQAWLAIRSGLPIQDTSALFLSRLGKRLSRRAVQYRLQQWAIRQGINIRVHPHMLRHSFA 242

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324
           +    +      +    G   +   + YT 
Sbjct: 243 SHVLQSSGDLRAVQEMLGHANISTTQVYTH 272


>gi|319655065|ref|ZP_08009133.1| hypothetical protein HMPREF1013_05756 [Bacillus sp. 2_A_57_CT2]
 gi|317393243|gb|EFV74013.1| hypothetical protein HMPREF1013_05756 [Bacillus sp. 2_A_57_CT2]
          Length = 279

 Score =  135 bits (341), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 48/259 (18%), Positives = 99/259 (38%), Gaps = 11/259 (4%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--TPSS 132
            + Y+        +  +   ++     +I+  GD     ITT+ I+  +         SS
Sbjct: 7   WNLYKADKQIQGYSSQTLKVYKVQMSLLIKYFGDIKITDITTESIKLYLGEVAAELKASS 66

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
               +  ++ LFKWA  ++YV++NP  +++ PK ++   +  T+E+++  +      +  
Sbjct: 67  LCHRIRFIKSLFKWAQEEKYVSVNPVSTIKEPKPESRIPKFLTEEEIELLREACKT-TFE 125

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE----LPDGFMKLLAM 247
           +  FEF+  +G R  +  +     +     S+    K      V           + L  
Sbjct: 126 KALFEFMYSTGCRIGEVVKLDRHSINMAEQSVIVFGKGKKEREVYFNTRCSIWLKRYLEE 185

Query: 248 TPIGKETFFINNDK-QKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATA 304
               ++  F+      +M+  Q     K  + +AG+NK    H +R   AT   + GA  
Sbjct: 186 RYDDQQALFVTIRAPHRMSIAQMRYVIKQISKRAGINKCIHPHQLRHSYATTLINNGAPL 245

Query: 305 HELMATYGWKTVDQAETYT 323
             +    G +  +    Y 
Sbjct: 246 EVIQNLMGHEKSETTRVYA 264


>gi|257080952|ref|ZP_05575313.1| prophage lambdaba03 [Enterococcus faecalis E1Sol]
 gi|256988982|gb|EEU76284.1| prophage lambdaba03 [Enterococcus faecalis E1Sol]
          Length = 301

 Score =  135 bits (341), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 47/278 (16%), Positives = 106/278 (38%), Gaps = 24/278 (8%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVESRKH 128
            + +I E+         +  +  +++S         KS + +  +I  KHI+S +   + 
Sbjct: 3   WEDIILEFCMDVTVKGFSKITIKNYKSKLRNTANFFKSINVEPSQIEKKHIKSWIIDMQE 62

Query: 129 T---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
                S+    ++ ++ LF + + ++Y+  NP + +ER K + + I P    +++Q  + 
Sbjct: 63  KEMQASTINVSVSRLKKLFDYMLIEKYIEYNPFVDIERLKEQRKVIYPLNDYEIKQMLTV 122

Query: 186 WSEGSQPRLA------FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239
             +     +A         ++  GLR S+ C    + + NN   I+  K      V +  
Sbjct: 123 AKKHPYKHIAQRNVVILMLMIECGLRISEVCEIRDEDIMNNQIIIRKSKNNKDRAVAVSP 182

Query: 240 GFMKLLAMTPI---------GKETFFINNDKQKMNATQFSIWFKAKATKAGV-NK---SA 286
              K +                 TF ++N  +K+N        +    +  + +    S 
Sbjct: 183 ILKKEIIKYHRIKKRKYGLLEGNTFIVSNLGKKLNEKSIWQIMQEIKKQIDIRDCVRFSG 242

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           H +R   A++    G   + L    G  +++  + Y +
Sbjct: 243 HTLRHTYASMQLRNGLDIYTLSLNMGHSSIEMTQRYVQ 280


>gi|134299829|ref|YP_001113325.1| tyrosine recombinase XerC [Desulfotomaculum reducens MI-1]
 gi|134052529|gb|ABO50500.1| tyrosine recombinase XerC subunit [Desulfotomaculum reducens MI-1]
          Length = 298

 Score =  135 bits (341), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 42/247 (17%), Positives = 82/247 (33%), Gaps = 15/247 (6%)

Query: 98  YFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINP 157
             ++ I K           +   + +  +  + ++  + L S R  FK+   +     NP
Sbjct: 40  VLNKPIEKMDHASINSSLVREFLAYLRQKNLSRATVARKLASWRAFFKFLYNERLAYTNP 99

Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKS---FWSEGSQPRLAFEFLLYSGLRCSDSCRAGV 214
            L V  PKR+    +   +E+ +Q          G + R   E L  +G+R S+     +
Sbjct: 100 MLRVANPKREKRLPKFLYQEETKQLVEAPDHSPLGIRDRALLELLYATGIRVSELVALDL 159

Query: 215 QHLQNNIFSIKTQKTGT-IITVELPDGFMKLLA---------MTPIGKETFFINNDKQKM 264
            ++      I+    G+    V      +  +          M     E  F+N    ++
Sbjct: 160 SNIDLARGYIRVMGKGSKERVVPFHQSAVAAMKEYCRNARPKMVIKDCEAVFVNYKGTRL 219

Query: 265 NATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           +             + G+    S H +R   AT   D GA    +    G  ++   + Y
Sbjct: 220 SDRGIRKIVDKYCQRLGMKLNVSPHTIRHSFATHLLDNGADLRSVQELLGHVSLSTTQIY 279

Query: 323 TKGADRI 329
           T    + 
Sbjct: 280 THVTKKK 286


>gi|269926944|ref|YP_003323567.1| integrase family protein [Thermobaculum terrenum ATCC BAA-798]
 gi|269790604|gb|ACZ42745.1| integrase family protein [Thermobaculum terrenum ATCC BAA-798]
          Length = 310

 Score =  135 bits (341), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 48/286 (16%), Positives = 111/286 (38%), Gaps = 31/286 (10%)

Query: 88  AVNSRISFESYF----DQIIRKSGDFDYRKITTKHIRSGV------ESRKHTPSSAIQFL 137
           + N+  ++++      D +  K     +  +T+  I+  +      + R + PS+  + +
Sbjct: 22  SNNTTAAYKNDILQFHDWLQGKDHINSWAAVTSSDIQDYLLYLKGNQDRAYAPSTQARKM 81

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-----SEGSQP 192
            +++  F++ V +  V  NP   +  P+ +    +  + +++    +        EG + 
Sbjct: 82  AAIKSFFQFLVAKSVVDQNPASDLISPRVQKYWPKAISVQEVNMLLAAASDSETPEGIRD 141

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA------ 246
           R   E L  +GLR S+     V  +  +   +K    G    V L    + +L       
Sbjct: 142 RAMLEVLYRTGLRVSELVSLNVDDINLDESHLKCIGRGKTRKVPLSQPAVDVLKLYLERS 201

Query: 247 ----MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG 301
               +    ++  F+N+  Q++    F +  KA A++AG+   + H +R   A    D G
Sbjct: 202 RPLLVRGQDEQALFVNHRGQRLTRQGFWLILKAYASEAGIKGITPHTLRHSFAAHMIDGG 261

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
               ++    G  ++   + Y     R      +S +I  +   ++
Sbjct: 262 IDLRQVQEWLGHASITTTQVY-----RQIKSNSHSEKIIDIKSREE 302


>gi|34541361|ref|NP_905840.1| integrase/recombinase XerD [Porphyromonas gingivalis W83]
 gi|34397678|gb|AAQ66739.1| integrase/recombinase XerD [Porphyromonas gingivalis W83]
          Length = 308

 Score =  135 bits (341), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 50/267 (18%), Positives = 97/267 (36%), Gaps = 23/267 (8%)

Query: 87  LAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMR 141
           L  NS  ++     ++            +      +H  + +     +  S  + ++ ++
Sbjct: 20  LTPNSVDAYLKDLSKLDSYLTAENISFREVSYENLQHFVAELYDLGISARSIARIISGVK 79

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFE 197
             F++ V +EY+  +P   +E P+         T E++ +        +    + R   E
Sbjct: 80  SFFRFLVLEEYIEADPTELLEGPRIGVHLPTVLTIEEVDRLIGSIDPAAQGAQRNRAILE 139

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPD----GFMKLL----AMT 248
            L   GLR S+       +L  N   ++    G     V + +       + L      T
Sbjct: 140 ILYSCGLRVSELTSLKFSNLFLNESFLRIDGKGRKQRLVPMSETAITELKRYLSDPERPT 199

Query: 249 PI--GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATA 304
           P+   +E  F++N  + ++     +  K  A +AG+ KS   H  R   AT   + GA  
Sbjct: 200 PVLGQEEYVFLSNRGKAISRIMVFVMIKKLAEEAGITKSISPHTFRHSFATHLLEGGANL 259

Query: 305 HELMATYGWKTVDQAETYTKGADRIRL 331
             +    G + +   E YT   DR  L
Sbjct: 260 QAIQLMLGHENIATTEIYTH-IDRETL 285


>gi|170765975|ref|ZP_02900786.1| tyrosine recombinase XerD [Escherichia albertii TW07627]
 gi|170125121|gb|EDS94052.1| tyrosine recombinase XerD [Escherichia albertii TW07627]
          Length = 298

 Score =  135 bits (341), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 40/265 (15%), Positives = 91/265 (34%), Gaps = 23/265 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGVESRKHTPSSAIQFLTS 139
            +LA N+  ++      ++             +    + + +      +  +S+ + L++
Sbjct: 19  KNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGYKATSSARLLSA 78

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195
           +R LF++  R+++   +P   +  P+      +  ++  +++             + +  
Sbjct: 79  VRRLFQYLYREKFREDDPSAYLASPRLPQRLPKDLSEAQVERLLQAPLIDQPLELRDKAM 138

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKET 254
            E L  +GLR S+     +  +      ++   K      V L +  +  L         
Sbjct: 139 LEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRP 198

Query: 255 FFIN----------NDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG 301
           + +N             Q+M    F    K  A  AG++    S H +R   AT   + G
Sbjct: 199 WLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHG 258

Query: 302 ATAHELMATYGWKTVDQAETYTKGA 326
           A    +    G   +   + YT  A
Sbjct: 259 ADLRVVQMLLGHSDLSTTQIYTHVA 283


>gi|222055852|ref|YP_002538214.1| tyrosine recombinase XerD [Geobacter sp. FRC-32]
 gi|221565141|gb|ACM21113.1| tyrosine recombinase XerD [Geobacter sp. FRC-32]
          Length = 295

 Score =  135 bits (341), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 49/270 (18%), Positives = 95/270 (35%), Gaps = 24/270 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIR---SGVESRKHTPSSAIQFLT 138
             L  N+  ++       +      G  D   IT   +    +G++ R  +P S  + L+
Sbjct: 16  KGLTKNTLEAYSRDLSVYLDFLAGQGRLDLDHITAMDVIEHLAGLKERGLSPRSRARALS 75

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRL 194
           ++++  ++ + + +   NP + +E P+         +  +++              +   
Sbjct: 76  AVKMFHRFLMVENHCPNNPAVIIEAPRSLNRLPDVLSGREVELLLDSARSADLNDVRDLA 135

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFM----------K 243
             E L  +GLR S+     ++ +  +   + T   G     V L +             +
Sbjct: 136 MLEVLYATGLRVSELVALKLRDVNLDAGYLLTMGKGEKERLVPLGETARLATAEYLRSAR 195

Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAG 301
           + A      E  FI+     M    F    K +A  AG+ KS   H +R   AT   + G
Sbjct: 196 VKADRKGDCEILFISRLGDGMTRQAFWNIIKKRAAAAGIRKSISPHSLRHSFATHLLENG 255

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRL 331
           A    +    G   +   + YT    R RL
Sbjct: 256 ADLRSVQIMLGHADLSSTQIYTH-VTRERL 284


>gi|309793966|ref|ZP_07688391.1| tyrosine recombinase XerD [Escherichia coli MS 145-7]
 gi|308122373|gb|EFO59635.1| tyrosine recombinase XerD [Escherichia coli MS 145-7]
          Length = 298

 Score =  135 bits (341), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 43/270 (15%), Positives = 95/270 (35%), Gaps = 24/270 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGVESRKHTPSSAIQFLTS 139
            +LA N+  ++      ++             +    + + +      +  +S+ + L++
Sbjct: 19  KNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGYKATSSARLLSA 78

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195
           +R LF++  R+++   +P   +  PK      +  ++  +++             + +  
Sbjct: 79  VRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLIDQPLELRDKAM 138

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKET 254
            E L  +GLR S+     +  +      ++   K      V L +  +  L         
Sbjct: 139 LEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVSLGEEAVYWLETYLEHGRP 198

Query: 255 FFIN----------NDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG 301
           + +N             Q+M    F    K  A  AG++    S H +R   AT   + G
Sbjct: 199 WLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHG 258

Query: 302 ATAHELMATYGWKTVDQAETYTKGA-DRIR 330
           A    +    G   +   + YT  A +R+R
Sbjct: 259 ADLRVVQMLLGHSDLSTTQIYTHVATERLR 288


>gi|240141172|ref|YP_002965652.1| putative phage integrase [Methylobacterium extorquens AM1]
 gi|240011149|gb|ACS42375.1| putative phage integrase [Methylobacterium extorquens AM1]
          Length = 389

 Score =  135 bits (341), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 62/392 (15%), Positives = 114/392 (29%), Gaps = 71/392 (18%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLP------YPHESTFIPAYMSALTGSTPKREY 60
           LP  V + +  +GK  YY+  G G +           P    F             +   
Sbjct: 3   LPSEVRRVKKPNGKCYYYWHPGRGTKREGKAIALGSDPSSPEFWE---------RIRGLR 53

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII--RKSGDFDYRKITTKH 118
           I        ++ W++  YR+S  + S A +++ S+  + ++       G      +  +H
Sbjct: 54  IAGTTAPAGSIAWVVGLYRESEAFRSCAESTQASYAVHLNRFANPEGWGHLPAEALEPRH 113

Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI---NPCLSVERPKRKTEGIRPWT 175
           + +  +S K TP  A Q L     L  WA    ++     NP   V        G  PW 
Sbjct: 114 VLALRDSMKETPVMANQMLAVGGTLCSWAAPFGHLGRRPFNPFEVVPGLDIPDRGHVPWP 173

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS---IKTQKTGTI 232
               +   +         +    +  +  R SD  R G  H          +KT+K    
Sbjct: 174 VWAQEYVLAKGPADLVRLVRLGVM--TCQRESDLVRMGPVHRDGAAIWCRPVKTRKKRRA 231

Query: 233 ITVELP-------------DGFMKLLAMTPIGKET----FFINNDKQKMNATQFSIWFKA 275
             + L                  +          T    +      Q     +    +  
Sbjct: 232 FRIPLTTTDALLLEQWTGEPILFENTRWKAPIARTHPDLYLFTPRAQAYTPDRIRARWTR 291

Query: 276 K-ATKAGVNK---------------------------SAHGVRKFSATISADAGATAHEL 307
              T+AG                              + HG+R     +   AG    ++
Sbjct: 292 WLETEAGTELCGKWRKWLATQVERYDWDIEPEEARGPTIHGLRGTGVLVRLSAGHDPQQV 351

Query: 308 MATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
               G  ++   + Y +  D++ +     RR+
Sbjct: 352 SNDIG-MSLPMVQRYIRFRDQVEVAEAGRRRL 382


>gi|188994249|ref|YP_001928501.1| putative integrase/recombinase XerD [Porphyromonas gingivalis ATCC
           33277]
 gi|188593929|dbj|BAG32904.1| putative integrase/recombinase XerD [Porphyromonas gingivalis ATCC
           33277]
          Length = 308

 Score =  135 bits (341), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 50/267 (18%), Positives = 97/267 (36%), Gaps = 23/267 (8%)

Query: 87  LAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMR 141
           L  NS  ++     ++            +      +H  + +     +  S  + ++ ++
Sbjct: 20  LTPNSVDAYLKDLSKLDSYLTAENISFREVSYENLQHFVAELYDLGISARSIARIISGVK 79

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFE 197
             F++ V +EY+  +P   +E P+         T E++ +        +    + R   E
Sbjct: 80  SFFRFLVLEEYIEADPTELLEGPRIGVHLPTVLTIEEVDRLIGAIDPAAQGAQRNRAILE 139

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPD----GFMKLL----AMT 248
            L   GLR S+       +L  N   ++    G     V + +       + L      T
Sbjct: 140 ILYSCGLRVSELTSLKFSNLFLNESFLRIDGKGRKQRLVPMSETAITELKRYLSDPERPT 199

Query: 249 PI--GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATA 304
           P+   +E  F++N  + ++     +  K  A +AG+ KS   H  R   AT   + GA  
Sbjct: 200 PVLGQEEYVFLSNRGKAISRIMVFVMIKKLAEEAGITKSISPHTFRHSFATHLLEGGANL 259

Query: 305 HELMATYGWKTVDQAETYTKGADRIRL 331
             +    G + +   E YT   DR  L
Sbjct: 260 QAIQLMLGHENIATTEIYTH-IDRETL 285


>gi|83720485|ref|YP_441282.1| site-specific tyrosine recombinase XerD [Burkholderia thailandensis
           E264]
 gi|257140051|ref|ZP_05588313.1| site-specific tyrosine recombinase XerD [Burkholderia thailandensis
           E264]
 gi|83654310|gb|ABC38373.1| tyrosine recombinase XerD [Burkholderia thailandensis E264]
          Length = 333

 Score =  135 bits (341), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 55/329 (16%), Positives = 105/329 (31%), Gaps = 26/329 (7%)

Query: 30  GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP--RKKPTTLKWLISEYRKSAHWGSL 87
            R  R+P P  ++      +A +   P  E   SP  R   T++               L
Sbjct: 2   ARAARIPAPGPASGGAGRGAAPSADRPADELAASPAWRDSRTSIDLFCDAMWLE---HGL 58

Query: 88  AVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGVESRKH-TPSSAIQFLTSMRVL 143
           + N+  ++        Q +         +     +   + +R     +S+ + L+  R  
Sbjct: 59  SRNTLDAYRRDLQLFAQWLAARHAVSLDRTERPMLEGYIAARSDGKATSSNRRLSVFRRY 118

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFEFL 199
           + WAVR+   A++P L +   K+        ++  ++   +        G + R   E +
Sbjct: 119 YGWAVREHRAAVDPTLRIASAKQAPRFPSTLSEAQVEALLAAPDVDTPLGLRDRTMLELM 178

Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLLAMT-- 248
             SGLR S+        +  N   ++    G+   +          +             
Sbjct: 179 YASGLRVSELVTLKTVEVGLNEGVVRVTGKGSKERLVPFGEVAHGWIERYLRDARPALLG 238

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHE 306
               +  F+      M   QF    K  A +A V  + S H +R   AT   + GA    
Sbjct: 239 ARAADALFVTARGDGMTRQQFWNIIKRHAQQADVRAHLSPHTLRHAFATHLLNHGADLRV 298

Query: 307 LMATYGWKTVDQAETYTKGADRIRLGIKN 335
           +    G   +   + YT  A      +  
Sbjct: 299 VQLLLGHSDISTTQIYTHVARERLKALHA 327


>gi|149276499|ref|ZP_01882643.1| site-specific recombinase [Pedobacter sp. BAL39]
 gi|149233019|gb|EDM38394.1| site-specific recombinase [Pedobacter sp. BAL39]
          Length = 292

 Score =  135 bits (341), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 48/265 (18%), Positives = 94/265 (35%), Gaps = 25/265 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDF----DYRKITTKH---IRSGVESRKHTPSSAIQFL 137
            +L+VNS  ++ S   ++           D +++ T       S V      P +  + +
Sbjct: 11  RALSVNSISAYISDVKKLFEYFDSTGKSYDIQEVNTSDLKLFISWVNELGMLPVTQARVI 70

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPR 193
           + ++  F +   ++ ++ +P  S+E P+   +       E++            EG + R
Sbjct: 71  SGIKSYFSFLSLEQLISSDPASSLETPRLNKKLPDTLNIEEINAMIQAIDHSKAEGLRSR 130

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLA------ 246
              E L   GLR S+  +  + ++  N   IK   K      + +    +K +       
Sbjct: 131 AMLEVLYGCGLRVSELIQMKISNIFINSEFIKVVGKGDKERIIPIGSAALKYIMMYINEV 190

Query: 247 -----MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
                +    ++  F+N     +         K  A  AG+ K  S H  R   AT   +
Sbjct: 191 RIEVPIKKGQEDFVFLNRRGTALTRMLIFNMIKGLAKDAGIQKNISPHTFRHSFATHLIE 250

Query: 300 AGATAHELMATYGWKTVDQAETYTK 324
            GA    +    G  ++   E YT 
Sbjct: 251 GGADLRAVQEMLGHSSITTTEIYTH 275


>gi|329960376|ref|ZP_08298801.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
 gi|328532814|gb|EGF59596.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
          Length = 407

 Score =  135 bits (340), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 60/352 (17%), Positives = 116/352 (32%), Gaps = 31/352 (8%)

Query: 8   PPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYI----NS 63
           P F  K   R   +  Y       R           +   M        + +        
Sbjct: 58  PKFAVKHNRRKENLSLYL--IDKPRTPAERQQNKETLELAMRIRAEREQEFKESMLGYRL 115

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG----DFDYRKITTKHI 119
            + +          Y  S     + +  +I+   + D +  +            IT + +
Sbjct: 116 KKDRAVNFLDYFQAYINSYTKKDIRMV-QIALSRFKDFLKEQYPMNEFSIKPELITKEMM 174

Query: 120 RSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR--PWT 175
              V   +       A       + + ++A+  + +  +PC SV   K  ++ +R    +
Sbjct: 175 EKFVAYLQSRSVGEGAKSIYQRFKKVIRYAIDHDVMLKDPCKSVT-CKVDSQMLRKDVLS 233

Query: 176 KEDMQQFKSFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTG- 230
            E++Q+  +   +   P  R AF F LY GLR  D      +++   N +   +  KT  
Sbjct: 234 PEEIQKLIACHYDNENPTIRRAFIFCLYCGLRFCDVKDLTYKNVDYANRLLKFEQSKTKG 293

Query: 231 ----TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284
               + + + L DG + ++   P  K     +               K    +AG++K  
Sbjct: 294 HSASSGVVIPLNDGLLSIIGEAPADKNCLIFDLP----TYESCCKSVKRWVKRAGIDKHI 349

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
           S H  R   A    + GA    + +  G   +   E YT+  D+++    NS
Sbjct: 350 SWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVDKLKEEAINS 401


>gi|114778675|ref|ZP_01453487.1| tyrosine recombinase XerD [Mariprofundus ferrooxydans PV-1]
 gi|114551037|gb|EAU53599.1| tyrosine recombinase XerD [Mariprofundus ferrooxydans PV-1]
          Length = 299

 Score =  135 bits (340), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 41/265 (15%), Positives = 83/265 (31%), Gaps = 19/265 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTK-----HIRSGVESRKHTPSSAIQFLTS 139
              +  +  S+ S          D     +           + +      P++  +  ++
Sbjct: 23  RGWSPQTTSSYRSDLLHADSYFVDHHTSLMQADGKAILDYLAKLGRDGMKPTTIQRRRSA 82

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195
           +   F W   Q     +P   + + ++     +  ++ D+++  +        G + R  
Sbjct: 83  LSTWFTWLQDQNLREDHPARHLPKLRKSRPLPKMMSEHDVERLLAAPETEDPVGLRDRCM 142

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMK------LLAMT 248
            E L  +G+R S+        ++ +   ++   K      +   +   +      LL   
Sbjct: 143 LELLYATGVRVSELVSLTRGQVEMDAGLLRVIGKGDKERLIPFGEEAGQWLQQWLLLRPA 202

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHE 306
                  F       M    F +  K  AT AG+    S H +R   AT   + GA    
Sbjct: 203 KPASPYLFAGRGGHAMTRQNFWLRIKRYATMAGIMPLPSPHTLRHAFATHLLNHGADLRA 262

Query: 307 LMATYGWKTVDQAETYTKGADRIRL 331
           +    G   V   E YT    R R+
Sbjct: 263 VQMLLGHAHVTTTEIYTH-VSRARM 286


>gi|323190786|gb|EFZ76055.1| phage integrase family protein [Escherichia coli RN587/1]
          Length = 339

 Score =  135 bits (340), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 60/335 (17%), Positives = 104/335 (31%), Gaps = 39/335 (11%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGR-----RIRLPYPHESTFIPAYMSALTGSTPKREYI 61
           LPP V            Y  K  G        R+     +     Y           E  
Sbjct: 13  LPPRVRS------NGYSYVWKPEGSTRTIGLGRVRETSVAKVWQNY-----------ELE 55

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121
            +      T+  L   +  S  +  LA  ++  +  +   ++   G      +  + +R 
Sbjct: 56  KAKLHNIMTVAKLWHMFMDSPAFTELAPRTQKDYRQHQRALLAVFGKVLADNVKIEQVRI 115

Query: 122 GVESRK-HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
            ++ R   + + A   L S+  ++ W   + YV  NPC  V +   K   +   T E   
Sbjct: 116 FMDKRGLESKTQANHELASLSRVYGWGYERGYVKNNPCKGVRKFTLKARTVYI-TDEQYA 174

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
              +      Q R+A E       R  D      Q + +    I+  KTG     E    
Sbjct: 175 AIYA--EAIPQLRIAMEISYLCAARLGDVLELKWQDIMDKGIYIEQNKTGAKQIKEWSPR 232

Query: 241 FMKLLA----MTPIGKETFFINNDKQKMNATQFSIWF----KAKATKAGVN--KSAHGVR 290
               +     +T    E         K+ A   + W+    +A   KAGV    + H + 
Sbjct: 233 LRTAIQLARNVTSGTCEYVINTTKGGKVIAKTLNNWWNQAKRAAEQKAGVPFGCNFHDI- 291

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           K       +   ++ +     G KT +Q   Y + 
Sbjct: 292 KAKGISDYE--GSSRDKQIFSGHKTENQVLIYDRK 324


>gi|303242648|ref|ZP_07329122.1| integrase family protein [Acetivibrio cellulolyticus CD2]
 gi|302589787|gb|EFL59561.1| integrase family protein [Acetivibrio cellulolyticus CD2]
          Length = 298

 Score =  135 bits (340), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 44/255 (17%), Positives = 95/255 (37%), Gaps = 19/255 (7%)

Query: 89  VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA----IQFLTSMRVLF 144
            N    F+ + + +           +TT  IR  +   K   + A     + +  +   +
Sbjct: 26  DNYTSDFKQFLNFLRVNGIQPKLNTVTTPIIRRYLAHLKTDKNYAVETIRRRVHCLSSYY 85

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS-----QPRLAFEFL 199
           K+ + QEY+  NP  ++  PK      +  + E++Q   +   + S     +    FE  
Sbjct: 86  KFLMEQEYIMKNPMFAIHAPKSPETIPKYLSIEEIQLLLTMPQKYSPDSVLRNLCIFECF 145

Query: 200 LYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLL-----AMTPIGK 252
           L +G+R  +        +     I +++  K      + + +  +  L        P+  
Sbjct: 146 LMTGMRRQELLDLNWDDIDFGEKIITVRNGKGKKQRVIPMTEPLISDLWKYLQTRLPLTN 205

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATISADAGATAHELMA 309
              FI+    +++AT     F+    K+G++K   + H +R   A+  A  GA+   +  
Sbjct: 206 HALFISAKGNRLSATPLEQTFRLYMRKSGLDKKGYTIHTLRHTYASHLALNGASILSIQK 265

Query: 310 TYGWKTVDQAETYTK 324
             G   ++  + Y  
Sbjct: 266 LLGHSDLNSTQIYAH 280


>gi|262382819|ref|ZP_06075956.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|262295697|gb|EEY83628.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
          Length = 407

 Score =  135 bits (340), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 86/224 (38%), Gaps = 20/224 (8%)

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR--PWTKEDMQQFKSFWSEGS 190
           A       + + ++A+  + +  NPC SV   K  ++ +R    + E++Q+  +   +  
Sbjct: 190 AKSIYQRFKKVIRYAIEHDVMLKNPCKSVT-CKVDSQMLRKDVLSPEEIQKLVACHYDNE 248

Query: 191 QP--RLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTG-----TIITVELPDGF 241
            P  R AF F LY GLR  D      +++   N +   +  KT      + + + L DG 
Sbjct: 249 NPNVRRAFVFCLYCGLRFCDVKDLTYKNVDYANRLLKFEQSKTKGHSASSGVVIPLNDGL 308

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
           + ++   P  K     +               K    +AG++K  S H  R   A    +
Sbjct: 309 LSIIGEAPADKNCLIFDLP----TYESCCKSVKRWVKRAGIDKHISWHCARHSFAVNILN 364

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343
            GA    + +  G   +   E YT+  D  +L  +    +  + 
Sbjct: 365 NGANIKTVASLLGHSGLKHTEKYTRAVD--KLKEEAINSLPELK 406


>gi|255065181|ref|ZP_05317036.1| tyrosine recombinase XerD [Neisseria sicca ATCC 29256]
 gi|255050602|gb|EET46066.1| tyrosine recombinase XerD [Neisseria sicca ATCC 29256]
          Length = 291

 Score =  135 bits (340), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 45/273 (16%), Positives = 100/273 (36%), Gaps = 19/273 (6%)

Query: 74  LISEYRKSAHWGS-LAVNSRISFESYFDQI--IRKSGDFDYRKITTKHIRSGVESRKHTP 130
           LI +  +S      L+ N+   +    ++I    ++G   +       +   V +     
Sbjct: 5   LIDKLLESLWLQDRLSHNTLQGYRRDLEKIAARLEAGGHTWLDAEAADLADAVYAADEKH 64

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----W 186
           SS  + L++ + L+ W    E    NP   ++ PK+  +     T+  ++   +      
Sbjct: 65  SSQARALSACKRLYAWLEETERRTDNPTRFLKAPKQTQKLPTLITEAQIENLLAAPDTDT 124

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-ELPDGFMKLL 245
             G + +   E +  +GLR +++ +  +  L  N   I+T   G  + +  + +  +  +
Sbjct: 125 PHGLRDKALLEVMYATGLRVTEAVKLQLGDLDLNRGCIRTIGKGDKLRIVPMGEEAVYWV 184

Query: 246 AMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSA 294
                               F++  +  ++     +  K  A  AG+   S HG+R   A
Sbjct: 185 ERYCAESRPLLLKNKICDEVFVSQKRSGISRQLAWMIVKNYAEAAGITSLSPHGLRHAFA 244

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           T   + G     +    G   ++  + YT  A+
Sbjct: 245 THLVNHGVDLRAVQLMLGHANINTTQIYTHVAN 277


>gi|1916335|gb|AAC45774.1| site-specific recombinase [Salmonella enterica subsp. enterica
           serovar Typhimurium]
          Length = 298

 Score =  135 bits (340), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 42/265 (15%), Positives = 90/265 (33%), Gaps = 23/265 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESR---KHTPSSAIQFLTS 139
            +LA N+  ++      ++                 +++ +  R    +  +++ + L++
Sbjct: 19  RNLAENTLSAYRRDLSMVVAWLHHRGKTLATAQADDLQTLLAERVEGGYKATTSARLLSA 78

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195
           MR  F+   R++Y   +P   +  PK      +  ++  +++             + +  
Sbjct: 79  MRRFFQHLYREKYREDDPSAQLASPKLPQRLPKDLSEAQVERLLQAPLIDQPLELRDKAM 138

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKET 254
            E L  +GLR S+     +  +      ++   K      V L +  +  L         
Sbjct: 139 LEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRP 198

Query: 255 FFIN----------NDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG 301
           + +N             Q+M    F    K  A  AG++    S H +R   AT   + G
Sbjct: 199 WLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHG 258

Query: 302 ATAHELMATYGWKTVDQAETYTKGA 326
           A    +    G   +   + YT  A
Sbjct: 259 ADLRVVQMLLGHSDLSTTQIYTHVA 283


>gi|161523917|ref|YP_001578929.1| site-specific tyrosine recombinase XerD [Burkholderia multivorans
           ATCC 17616]
 gi|189351322|ref|YP_001946950.1| site-specific tyrosine recombinase XerD [Burkholderia multivorans
           ATCC 17616]
 gi|160341346|gb|ABX14432.1| tyrosine recombinase XerD [Burkholderia multivorans ATCC 17616]
 gi|189335344|dbj|BAG44414.1| tyrosine recombinase [Burkholderia multivorans ATCC 17616]
          Length = 316

 Score =  135 bits (340), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 49/268 (18%), Positives = 89/268 (33%), Gaps = 22/268 (8%)

Query: 85  GSLAVNSRISFES---YFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSSAIQFLTSM 140
             LA N+  ++      F Q +  + D          +   + +R     +S+ + L+  
Sbjct: 39  HGLARNTLDAYRRDLTLFSQWLAATHDAALDAADETMLTGYIAARSDGKATSSNRRLSVF 98

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAF 196
           R  + WAVR+   + +P L +   K+        ++  ++            G + R   
Sbjct: 99  RRYYGWAVREHRASADPTLRIASAKQAARFPSTLSEAQVEALLGAPDIATPLGLRDRTML 158

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLLAM 247
           E +  SGLR S+        +  N   ++    G+   +          +     +    
Sbjct: 159 ELMYASGLRVSELVTLKTVEVGLNEGVVRVMGKGSKERLVPFGEVAHGWIERYLREARPA 218

Query: 248 T--PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGAT 303
                  +  F+      M   QF    K  A  A V  + S H +R   AT   + GA 
Sbjct: 219 LLGARAADALFVTARGDGMTRQQFWNIIKRHAQHADVRAHLSPHTLRHAFATHLLNHGAD 278

Query: 304 AHELMATYGWKTVDQAETYTKGADRIRL 331
              +    G   +   + YT  A R RL
Sbjct: 279 LRVVQLLLGHADISTTQIYTHVA-RERL 305


>gi|167569023|ref|ZP_02361897.1| site-specific tyrosine recombinase XerD [Burkholderia oklahomensis
           C6786]
          Length = 325

 Score =  135 bits (340), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 53/270 (19%), Positives = 93/270 (34%), Gaps = 26/270 (9%)

Query: 85  GSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGVESRKH-TPSSAIQFLTSM 140
             L+ N+  ++        Q +      +        +   + +R     +S+ + L+  
Sbjct: 48  HGLSRNTLDAYRRDLQLFAQWLAAQHAENVDHANEAMLTGYIAARSDGKATSSNRRLSVF 107

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAF 196
           R  + WAVR+   A++P L +   K+        ++  ++   +        G + R   
Sbjct: 108 RRYYGWAVREHRAAVDPTLRIASAKQAPRFPSTLSEAQVEALLAAPDVDTPLGLRDRTML 167

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-------------ITVELPDGFMK 243
           E +  SGLR S+        +  N   ++    G+              I   L DG   
Sbjct: 168 ELMYASGLRVSELVTLKSVEVGLNEGVVRVTGKGSKERLVPFGEVAHGWIERYLRDGRPA 227

Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAG 301
           LL       +  F+      M   QF    K  A +A V  + S H +R   AT   + G
Sbjct: 228 LLGA--RAADALFVTARGDGMTRQQFWNIIKRHAQQADVRAHLSPHTLRHAFATHLLNHG 285

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRL 331
           A    +    G   +   + YT  A R RL
Sbjct: 286 ADLRVVQLLLGHSDISTTQIYTHVA-RERL 314


>gi|188578603|ref|YP_001915532.1| site-specific tyrosine recombinase XerD [Xanthomonas oryzae pv.
           oryzae PXO99A]
 gi|58425056|gb|AAW74093.1| integrase-recombinase XerD [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|188523055|gb|ACD61000.1| tyrosine recombinase XerD [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 336

 Score =  135 bits (340), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 51/317 (16%), Positives = 107/317 (33%), Gaps = 38/317 (11%)

Query: 47  YMSALTGSTPKREYINSPRKKP------TTLKWLISEYRKSAHWGSLAVNSRISFESYFD 100
           Y  A++ S+P      + +  P        ++  +  +        +A  +  S+    +
Sbjct: 10  YAVAMSASSPAERRQLAQQLPPLQAADAGVIERFLDRFWAE---QGVARQTLESYRRDLE 66

Query: 101 QIIR-----KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI 155
            + R       G     ++             ++P S  + L+++R  + W +R    + 
Sbjct: 67  GLARWRAGAGGGLLGIDRVALFDYLRWRAQANYSPRSTARLLSTLRAFYGWCLRDGVRSD 126

Query: 156 NPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCR 211
           +P   ++ P+      +  T+  ++   +        G + R   E +  +GLR S+   
Sbjct: 127 DPTALIDPPQLPRSLPKALTESQIEALLAAPEVDTPAGLRDRAMLELMYAAGLRVSELVN 186

Query: 212 AGVQHLQNNIFSIKTQKTGTI-ITVELPDGFMKLLA----------------MTPIGKET 254
                +      ++    G+    V L +     L                     G+  
Sbjct: 187 LPAVGVNLRQGVLRVTGKGSKDRLVPLGEESQHWLERYLREARPLLAANKPVAAVDGQVP 246

Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATY 311
            FI+  +Q ++   F    K  A  AG++    S HG+R   AT   + GA    L    
Sbjct: 247 LFIDAARQALSRQHFWALVKRYAAVAGIDPAMVSPHGLRHSFATHLLNHGADLRALQMLL 306

Query: 312 GWKTVDQAETYTKGADR 328
           G  ++   + YT  A +
Sbjct: 307 GHSSLSTTQIYTLVARQ 323


>gi|154686593|ref|YP_001421754.1| site-specific tyrosine recombinase XerD [Bacillus amyloliquefaciens
           FZB42]
 gi|154352444|gb|ABS74523.1| XerD [Bacillus amyloliquefaciens FZB42]
          Length = 296

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 44/264 (16%), Positives = 97/264 (36%), Gaps = 24/264 (9%)

Query: 85  GSLAVNSRISFESYFDQ----IIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI---QFL 137
             L+ N+ +S+E         +        +  +T  HI   ++  K +  S     + L
Sbjct: 16  RGLSQNTMMSYERDLKSYSLFLTETLQITSWNDVTRLHIIQYLKHIKDSGKSGKTSARHL 75

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPR 193
            S+R   ++ +R++    +P + +E  K +    +     ++++           G + +
Sbjct: 76  ASIRSFHQFLLREKAADKDPSVHIETQKTERTLPKVLALHEVERLLDTPKLDSPFGLRDK 135

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM---TP 249
              E L  +G+R S+     +  +   +  ++   K      V + +     +       
Sbjct: 136 AMLELLYATGIRVSEMIELKLSDVHLTMGFVRCFGKGRKERIVPIGEAASHAIEAYIEKA 195

Query: 250 IGK-------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
            GK       E  F+N+  ++++   F    K  A +AG+ K  + H +R   AT   + 
Sbjct: 196 RGKLLKKNVTEALFLNHHGRQISRQGFWKNLKKIALEAGIKKELTPHTLRHSFATHLLEN 255

Query: 301 GATAHELMATYGWKTVDQAETYTK 324
           GA    +    G   +   + YT 
Sbjct: 256 GADLRAVQEMLGHADISTTQIYTH 279


>gi|256391647|ref|YP_003113211.1| tyrosine recombinase XerD [Catenulispora acidiphila DSM 44928]
 gi|256357873|gb|ACU71370.1| tyrosine recombinase XerD [Catenulispora acidiphila DSM 44928]
          Length = 306

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 46/271 (16%), Positives = 98/271 (36%), Gaps = 25/271 (9%)

Query: 85  GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGVESRKHTPSS-AIQFLTSM 140
             L+ N+  ++     +           ++  I    + + + S +   +S A + ++++
Sbjct: 23  RGLSANTLAAYRRDLSRYRVFLDTRDRANFSDIDRADVSAFLASLQDGAASSAARTMSAV 82

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLAF 196
           R L ++AV + +V ++    V  P+      +    +D+++  +          + R   
Sbjct: 83  RGLHRFAVAEGWVGVDVSDDVAPPQVPMRLPKALPLDDIERLLAATEIDEPMALRDRALL 142

Query: 197 EFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVEL--------PDGFMKLLAM 247
           EFL  +G R S++    V  +   +   +   K G    V +         D  ++L   
Sbjct: 143 EFLYSTGARVSEAVALDVDDIDREDRTVVLDGKGGKQRLVPVGSYACRAVDDYLVRLRPE 202

Query: 248 TPIGKET-----FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
                 +      F+N    ++          A A + G+    S H +R   AT   D 
Sbjct: 203 LTRKARSGNGGALFLNARGGRLTRQGAWTVLGAVAERVGLAGRVSPHTLRHSFATHLLDG 262

Query: 301 GATAHELMATYGWKTVDQAETYTK-GADRIR 330
           GA    +    G  +    + YT+   DR+R
Sbjct: 263 GADIRTVQELLGHSSATTTQIYTRVTVDRLR 293


>gi|33595884|ref|NP_883527.1| site-specific tyrosine recombinase XerD [Bordetella parapertussis
           12822]
 gi|33565963|emb|CAE36514.1| integrase/recombinase [Bordetella parapertussis]
          Length = 310

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 49/306 (16%), Positives = 97/306 (31%), Gaps = 35/306 (11%)

Query: 62  NSPRKKPTTLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD---------- 110
           ++P      L   I   + +      LA N+  ++        +   +            
Sbjct: 4   SAPLASQADLDAFIDAVWLEDG----LAANTLAAYRRDLSAFAQWLENPACHPGLATGHS 59

Query: 111 YRKITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168
            R+     I +   +R  +   ++A + L ++R  + WA+R+     +PCL++   K+  
Sbjct: 60  LREAGKGDIEAWFAARHAESRATTANRRLAALRRFYAWALRERLTPSDPCLTLVTAKQPP 119

Query: 169 EGIRPWTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
              +  ++  +             G + R   E L  +GLR S+        +  N   +
Sbjct: 120 RLPKTLSEAQVDALLQAPDLDTARGLRDRAMLETLYATGLRVSELVSVKALDVSLNEGVV 179

Query: 225 KT--QKTGTIITVELPDGFMKLLAM----------TPIGKETFFINNDKQKMNATQFSIW 272
           +    K G    V L       +                 +  F+    + M+   F   
Sbjct: 180 RVVMGKGGKDRLVPLGAEAAHWIERYAGSARPELLGARVADALFVTARAEPMSRQAFWQL 239

Query: 273 FKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
            K  A  A +    S H +R   AT   + GA    +    G   +   + YT  A    
Sbjct: 240 VKKYALAADIRAPLSPHVLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVACERL 299

Query: 331 LGIKNS 336
             +  +
Sbjct: 300 KALHAA 305


>gi|253681771|ref|ZP_04862568.1| tyrosine recombinase XerD [Clostridium botulinum D str. 1873]
 gi|253561483|gb|EES90935.1| tyrosine recombinase XerD [Clostridium botulinum D str. 1873]
          Length = 292

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 45/269 (16%), Positives = 95/269 (35%), Gaps = 20/269 (7%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK-----HIRSGVESRKHT 129
           +S+Y +      L+ N+  +++    +  +         + +           ++  +  
Sbjct: 5   LSKYIEDMLKKELSKNTIEAYKRDLLKFAKFLNKRHENILESDMVSIMAYVQILKKERKA 64

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-- 187
            SS I+ L ++R  +K+ ++      NP ++ E PK K       T +++ +F S     
Sbjct: 65  DSSIIRSLVAIRNFYKFLIKTGENVDNPLINYEVPKNKRTLPEILTVDEVDKFLSAPDCS 124

Query: 188 --EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK-TGTIITVE-------- 236
             +G + +   E +  +G++ S+  +  +  +   +  IK +        +         
Sbjct: 125 EYKGIRDKAMLELMYATGMKVSELLKITIFDVNLKLSYIKCKGAKDKERIIPIGSYAVNC 184

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSA 294
           L +       M     E  F N    KM    F    K  A  A +NK    + +R   A
Sbjct: 185 LNEYLKVRDKMNADNSELLFCNLRGGKMTRQGFWKIVKKYAKDANINKKIDSYTLRHSFA 244

Query: 295 TISADAGATAHELMATYGWKTVDQAETYT 323
                 GA    +    G  T+   + Y+
Sbjct: 245 VHLLQNGADMKSVQELLGHNTIATTQIYS 273


>gi|168242831|ref|ZP_02667763.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|194449828|ref|YP_002047028.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194408132|gb|ACF68351.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|205338181|gb|EDZ24945.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
          Length = 298

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 43/265 (16%), Positives = 90/265 (33%), Gaps = 23/265 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESR---KHTPSSAIQFLTS 139
            +LA N+  ++      ++                 +++ +  R    +  +S+ + L++
Sbjct: 19  RNLAENTLSAYRRDLSMVVAWLHHRGKTLATAQADDLQTLLAERVEGGYKATSSARLLSA 78

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195
           MR  F+   R++Y   +P   +  PK      +  ++  +++             + +  
Sbjct: 79  MRRFFQHLYREKYREDDPSAQLASPKLPQRLPKDLSEAQVERLLQAPLIDQPLELRDKAM 138

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKET 254
            E L  +GLR S+     +  +      ++   K      V L +  +  L         
Sbjct: 139 LEVLYATGLRVSELVGLTMSDISLRQGMVRVIGKGNKERLVPLGEEAVYWLETYLEHGRP 198

Query: 255 FFIN----------NDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG 301
           + +N             Q+M    F    K  A  AG++    S H +R   AT   + G
Sbjct: 199 WLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHG 258

Query: 302 ATAHELMATYGWKTVDQAETYTKGA 326
           A    +    G   +   + YT  A
Sbjct: 259 ADLRVVQMLLGHSDLSTTQIYTHVA 283


>gi|157158542|ref|YP_001463323.1| phage integrase family site specific recombinase [Escherichia coli
           E24377A]
 gi|157080572|gb|ABV20280.1| site-specific recombinase, phage integrase family [Escherichia coli
           E24377A]
          Length = 342

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 62/333 (18%), Positives = 114/333 (34%), Gaps = 36/333 (10%)

Query: 6   RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHE---STFIPAYMSALTGSTPKREYIN 62
           +LPP V K      K  YYF+      I L   ++   +     Y   L  +        
Sbjct: 12  KLPPRVYKN-----KYSYYFKPTPRECITLGKINDLSIAQVWVKYEEILNDAIDV----- 61

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122
                  T   L +++  S ++  L   ++  +  +  +++   G      +   H+R  
Sbjct: 62  ------MTFSKLWNKFLNSTYYLELGQRTQKDYLQHQKKLLAAFGKMKADNVKPAHVRLY 115

Query: 123 VESRKHT-PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
           ++ R     + A     SM  +F+W   + YV  NPC  V +   K      +T E+   
Sbjct: 116 MDKRGLKSKTQANHEKASMSRVFRWGYERGYVKGNPCQGVSKFSLKPRDYY-FTDEE--- 171

Query: 182 FKSFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
           + + + E S   + A E       R  D  +     + +    I+  KTG     +  + 
Sbjct: 172 YIAIYQEASPVLQCAMEIAYLCATRIGDIRKLTWDQVMSKGLFIQQGKTGKKQIKQYSER 231

Query: 241 FM-KLLAMTPIGKETF-FINNDKQKMNATQFSIWFKAKATKAG------VNKSAHGVRKF 292
               L     +G + F   N    + + T F+  ++     A       +  + H + K 
Sbjct: 232 LTFALEQAKSLGGQHFVVCNKYGGQYSYTGFNDIWRKARAAASEKLGYPITGTFHDL-KA 290

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKG 325
                 D   ++ E     G KT  Q  TY + 
Sbjct: 291 KGISDYD--GSSKEKQLFSGHKTEAQVLTYDRK 321


>gi|296126655|ref|YP_003633907.1| tyrosine recombinase XerD [Brachyspira murdochii DSM 12563]
 gi|296018471|gb|ADG71708.1| tyrosine recombinase XerD [Brachyspira murdochii DSM 12563]
          Length = 310

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 56/265 (21%), Positives = 98/265 (36%), Gaps = 28/265 (10%)

Query: 85  GSLAVNSRISFES----YFDQIIRKSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFL 137
             L+ N+  S++     Y D + R        K T K I   +  RK       +  +  
Sbjct: 23  KGLSSNTLESYKRDIVIYLDFLTRN--KKTILKATRKDIEKFLSERKEQGSKSRTVARNK 80

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPR 193
            S+  L+K+ V + Y++ NP  ++E  + K       T  ++    S       +G + +
Sbjct: 81  VSIVNLYKFLVMENYISKNPTDNLEVIRLKRVLPESLTTTEVDDLLSVHNEKTDKGLRDK 140

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKLLAMTP-- 249
             FE +  SGLR S+ C   +  +  +     I+ +     I V + D  + +L      
Sbjct: 141 AIFELMYSSGLRVSEICSLRIDDIFFEGKYLKIRGKGNKERI-VPINDRALDILQRYIQT 199

Query: 250 ------IGKET--FFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISAD 299
                  GK+T   F+N    K++        K    K+ + K+   H +R   AT    
Sbjct: 200 SRVIMVKGKKTSELFLNFRGDKISRVGIWKIVKETMKKSNITKNVYPHTLRHSFATHLIQ 259

Query: 300 AGATAHELMATYGWKTVDQAETYTK 324
            GA    +    G   +   E YT 
Sbjct: 260 HGADLRAVQRMLGHSDITTTEIYTH 284


>gi|291514262|emb|CBK63472.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
          Length = 407

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 58/359 (16%), Positives = 115/359 (32%), Gaps = 33/359 (9%)

Query: 8   PPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYI----NS 63
           P F  K   R   +  Y       R           +            + +        
Sbjct: 58  PKFAVKHNRRKENLSLYL--IDKPRTPAERQQNKETLELATKIRAEREQEFKESMLGYRL 115

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG----DFDYRKITTKHI 119
            + +          Y  S     + +  +I+   + D +  +            IT + +
Sbjct: 116 KKDRTVNFLDYFQAYINSYTKKDIRMV-QIALSRFKDFLKEQYPMNEFSIKPELITKEMM 174

Query: 120 RSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR--PWT 175
              V   +       A       + + ++A+  + +  +PC SV   K  ++ +R    +
Sbjct: 175 EQFVAYLQSRSVGEGAKSIYQRFKKVIRYAIDHDVMLKDPCKSVT-CKVDSQMLRKDVLS 233

Query: 176 KEDMQQFKSFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTG- 230
            E++Q+  +   +   P  R AF F LY GLR  D      +++   N +   +  KT  
Sbjct: 234 PEEIQKLAACHYDNENPNVRRAFIFCLYCGLRFCDVKDLTYKNVDYGNRLLKFEQSKTKG 293

Query: 231 ----TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284
               + + + L DG + ++   P  K     +               K    +AG++K  
Sbjct: 294 HSASSGVVIPLNDGLLSIIGEAPADKNCLIFDLP----TYESCCKSVKRWVKRAGIDKHI 349

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343
           S H  R   A    + GA    + +  G   +   E YT+  D  +L  +    +  + 
Sbjct: 350 SWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVD--KLKEEAINSLPELK 406


>gi|302188726|ref|ZP_07265399.1| Phage integrase:Phage integrase, N-terminal SAM-like protein
           [Pseudomonas syringae pv. syringae 642]
          Length = 344

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 59/332 (17%), Positives = 117/332 (35%), Gaps = 28/332 (8%)

Query: 11  VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSAL--TGSTPKREYINSPRKKP 68
           + K + R G + YY+  G   R  +P   +      Y  A+       K    ++  ++ 
Sbjct: 14  LRKRKQRSGVVYYYYDLGGSPRKEIPLGSD------YGMAIVEYAKLEKSRTSSALVQQV 67

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESR 126
            T  ++  +Y       + +  ++        Q+++   D       I  +H+   +  R
Sbjct: 68  LTFAYVAEKYMAEV-VPTKSPATQKDNARELKQLLKFFDDPPAPLEAIEPQHVVQYLRQR 126

Query: 127 KHT-PSSAIQFLTSMRVLFKWAVRQEYVA-INPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
             T P  A +    +  ++ +A    Y A  NPC  V+  K            + + F  
Sbjct: 127 GKTAPVRANREKALLSAIWNFARSAGYTALANPCAGVKGHKEVGRDHYI----EDEMFAL 182

Query: 185 FWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
            +S   QP R A +    +G R +D+ +   + ++     ++  KT     +E+      
Sbjct: 183 VYSHAEQPLRDALDLFYLTGQRIADTLKMDERDIREGRLWVQQGKTNAKRRIEITGELKV 242

Query: 244 LLAMTPIGKE-------TFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFS 293
           ++      KE          + ++ Q M ++     F A    AGV K       +R  +
Sbjct: 243 VIDRIMTRKEGHRIRTSRLIVMDNGQPMTSSMLRGRFDAAREAAGVEKGEFQMRDLRAKA 302

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKG 325
            T  A++     +     G  TV   E Y + 
Sbjct: 303 GTDKAESSGDILQARDQLGHTTVVMTENYIRK 334


>gi|300824138|ref|ZP_07104257.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 119-7]
 gi|331667354|ref|ZP_08368219.1| putative integrase for prophage [Escherichia coli TA271]
 gi|300523314|gb|EFK44383.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 119-7]
 gi|331065710|gb|EGI37603.1| putative integrase for prophage [Escherichia coli TA271]
          Length = 300

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 50/267 (18%), Positives = 90/267 (33%), Gaps = 17/267 (6%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK-H 128
           T+  L   +  S  +  LA  ++  +  +   ++   G      +  + +R  ++ R   
Sbjct: 25  TVAKLWHMFMDSPAFTELAPRTQKDYRQHQRALLAVFGKVLADNVKIEQVRIFMDKRGLE 84

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           + + A   L S+  ++ W   + YV  NPC  V +   K   +   T E      +    
Sbjct: 85  SKTQANHELASLSRVYGWGYERGYVKNNPCKGVRKFTLKARTVYI-TDEQYAAIYA--EA 141

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248
             Q R+A E       R  D      Q +      I+  KTGT    E        + + 
Sbjct: 142 IPQLRIAMEISYLCAARLGDVLELKWQDIMEKGIYIEQNKTGTKQIKEWSPRLRTAIQLA 201

Query: 249 ----PIGKETFFINNDKQKMNATQFSIWF----KAKATKAGVN--KSAHGVRKFSATISA 298
                   E         K+ A   + W+    +A   KAGV    + H + K       
Sbjct: 202 RNVSSGTCEYVINTTKGGKVIAKTLNNWWNQAKRAAEQKAGVPFGCNFHDI-KAKGISDY 260

Query: 299 DAGATAHELMATYGWKTVDQAETYTKG 325
           +   ++ +     G KT +Q   Y + 
Sbjct: 261 E--GSSRDKQIFSGHKTENQVLIYDRK 285


>gi|50119715|ref|YP_048882.1| site-specific tyrosine recombinase XerD [Pectobacterium
           atrosepticum SCRI1043]
 gi|49610241|emb|CAG73684.1| integrase/recombinase [Pectobacterium atrosepticum SCRI1043]
          Length = 299

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 45/278 (16%), Positives = 94/278 (33%), Gaps = 26/278 (9%)

Query: 74  LISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFD-----YRKITTKHIRSGVESR 126
           LI ++   A W   +LA N+  S+      +       D      + +  +   +     
Sbjct: 8   LIEQFL-DALWLERNLAENTLASYRLDLRSLAEWLAHHDNDLLHAQALDLQAFLADRIDG 66

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185
            +  +S+ + L++MR  F++  R++  + +P   +  PK      +  ++  +       
Sbjct: 67  GYKATSSARLLSAMRRFFQYLYREKQRSDDPSAVLSSPKLPQRLPKDLSEAQVSALLDAP 126

Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241
                   + +   E L  +GLR S+     +  +      ++   K      V L +  
Sbjct: 127 SIEQPLELRDKAMLEVLYATGLRVSELVGLTMSDVSLRQGVVRVLGKGNKERLVPLGEEA 186

Query: 242 MKLLAMTPIGKETFFIN----------NDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288
           +  +         + +N          N  ++M    F    K  A  A ++    S H 
Sbjct: 187 VYWIEYYLEHGRPWLLNGQTLDVLFPSNRARQMTRQTFWHRIKHYAVLASIDSAKLSPHV 246

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           +R   AT   + GA    +    G   +   + YT  A
Sbjct: 247 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA 284


>gi|315230922|ref|YP_004071358.1| phage integrase [Thermococcus barophilus MP]
 gi|315183950|gb|ADT84135.1| phage integrase [Thermococcus barophilus MP]
          Length = 276

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 48/282 (17%), Positives = 106/282 (37%), Gaps = 20/282 (7%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
           I E+         + N+   +  Y  + + +  D + R        + ++   ++  S  
Sbjct: 3   IEEFEMYLELEGKSQNTVRMYSYYVKKFLEEGNDLNARS--ALRFLAVLKRSGYSNKSLN 60

Query: 135 QFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-GSQP 192
             + +++  F++  + +E         ++ PK      +  TKE++++  S       + 
Sbjct: 61  LVVQALKAYFRFEGLEEE------AKKIKSPKVPRSLPKSLTKEEVKKLLSVIPPTRKRD 114

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMK----LLA 246
           RL    L  SGLR S+ C   +  +    ++  ++  K G    V +P   +K     L 
Sbjct: 115 RLIVLLLYGSGLRVSELCNLKINDVDFKRSLIIVRGGKGGKDRIVPVPGALLKEIEDYLK 174

Query: 247 MTPIGKETFFI---NNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGAT 303
           M     E   +    + K +++             KAG+  + H +R   AT   + G  
Sbjct: 175 MRNDDSEYLLVEERRSRKDRLSPKTVWYILNKYGKKAGIKVTPHMLRHSFATHMLENGID 234

Query: 304 AHELMATYGWKTVDQAETYTK-GADRIRLGIKNSRRISSVVD 344
              +    G   +   + YTK   + +R   + ++ I S+++
Sbjct: 235 IRVIQEILGHSNLSTTQIYTKVTVEHLRRAQEKAKLIESLIE 276


>gi|189465362|ref|ZP_03014147.1| hypothetical protein BACINT_01711 [Bacteroides intestinalis DSM
           17393]
 gi|189437636|gb|EDV06621.1| hypothetical protein BACINT_01711 [Bacteroides intestinalis DSM
           17393]
          Length = 407

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 60/350 (17%), Positives = 115/350 (32%), Gaps = 27/350 (7%)

Query: 8   PPFVTKERTRHGKIIYY-FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKR-EYINSPR 65
           P F  K   R   +  Y   K      R              +       +        +
Sbjct: 58  PKFAVKHNRRKENLSLYLIDKPRTPAERQRNKETLELATKIRAEREQEFKESMLGYRLKK 117

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG----DFDYRKITTKHIRS 121
            +          Y  S     + +  +I+   + D +  +            IT + +  
Sbjct: 118 DRTVNFLDYFQAYINSYTKKDIRMV-QIALSRFKDFLKEQYPMNEFSIKPELITKEMMEQ 176

Query: 122 GVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR--PWTKE 177
            V   +       A       + + ++A+  + +  +PC SV   K  ++ +R    + E
Sbjct: 177 FVAYLQSRSVGEGAKSIYQRFKKVIRYAIDHDVMLKDPCKSVT-CKVDSQMLRKDVLSPE 235

Query: 178 DMQQFKSFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTG--- 230
           ++Q+  +   +   P  R AF F LY GLR  D      +++   N +   +  KT    
Sbjct: 236 EIQKLAACHYDNENPNVRRAFIFCLYCGLRFCDVKDLTYKNVDYANRLLKFEQSKTKGHS 295

Query: 231 --TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286
             + + + L DG + ++   P  K     +               K    +AG++K  S 
Sbjct: 296 ASSGVVIPLNDGLLSIIGEAPADKNCLIFDLP----TYESCCKSVKRWVKRAGIDKHISW 351

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
           H  R   A    + GA    + +  G   +   E YT+  D+++    NS
Sbjct: 352 HCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVDKLKEEAINS 401


>gi|284008137|emb|CBA74367.1| phage integrase [Arsenophonus nasoniae]
          Length = 338

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 62/338 (18%), Positives = 110/338 (32%), Gaps = 43/338 (12%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKR----EYIN 62
           +PP V +     G+  Y F+  +GR IRL              AL           E   
Sbjct: 13  MPPRVFR-----GRSAYEFKHPNGRTIRLC-------------ALNADKSVVWSHYEQYV 54

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122
           +  K     + LI+++  SA +  L+ +++  ++ Y  ++I   G  +   I  +HIR  
Sbjct: 55  NDEKHIFNYESLINQFLCSADFIELSKDTQNDYQKYSKKVIPVFGKMNPDNIKPEHIRKY 114

Query: 123 VESRKHT-PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
           ++ R     + A +  + M  +F+W   +  V  NPC  V++ K         T  +   
Sbjct: 115 MDKRGLKSRTQANREKSFMSRVFRWGYERGLVKNNPCKGVKQYKEIARDRYV-TDTEYHA 173

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241
             S      Q  +A E       R  D        L      IK  KTG        +  
Sbjct: 174 LYSISPLIVQ--IAMELAYLCCARQGDILALRKDQLMEAGIYIKQGKTGKSQIKGWSERL 231

Query: 242 MKLLAMTP-------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-------SAH 287
            K + +         +         + +      F+  +     +A           + H
Sbjct: 232 TKTIKLAKQLPLKEGVNSLYVLHQANGKLYTRDGFNSRWLKAKEEAAKKYPELDFNFTFH 291

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
            ++    +       T  E  A  G K + Q   Y + 
Sbjct: 292 DLKAKGISDLD---GTLQEKQAISGHKNIGQTARYDRK 326


>gi|33600415|ref|NP_887975.1| site-specific tyrosine recombinase XerD [Bordetella bronchiseptica
           RB50]
 gi|33568014|emb|CAE31927.1| integrase/recombinase [Bordetella bronchiseptica RB50]
          Length = 310

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 49/306 (16%), Positives = 97/306 (31%), Gaps = 35/306 (11%)

Query: 62  NSPRKKPTTLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGD----------FD 110
           ++P      L   I   + +      LA N+  ++        +   +            
Sbjct: 4   SAPLASQADLDAFIDAVWLEDG----LAANTLAAYRRDLSAFAQWLENPACHPGLATGAS 59

Query: 111 YRKITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168
            R+     I +   +R  +   ++A + L ++R  + WA+R+     +PCL++   K+  
Sbjct: 60  LREAGKGDIEAWFAARHAESRATTANRRLAALRRFYAWALRERLTPSDPCLTLVTAKQPP 119

Query: 169 EGIRPWTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
              +  ++  +             G + R   E L  +GLR S+        +  N   +
Sbjct: 120 RLPKTLSEAQVDALLQAPDLDTARGLRDRAMLETLYATGLRVSELVSVKALDVSLNEGVV 179

Query: 225 KT--QKTGTIITVELPDGFMKLLAM----------TPIGKETFFINNDKQKMNATQFSIW 272
           +    K G    V L       +                 +  F+    + M+   F   
Sbjct: 180 RVVMGKGGKDRLVPLGAEAAHWIERYAGSARPELLGARVADALFVTARAEPMSRQAFWQL 239

Query: 273 FKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
            K  A  A +    S H +R   AT   + GA    +    G   +   + YT  A    
Sbjct: 240 VKKYALAADIRAPLSPHVLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVARERL 299

Query: 331 LGIKNS 336
             +  +
Sbjct: 300 KALHAA 305


>gi|319944411|ref|ZP_08018685.1| tyrosine recombinase XerD [Lautropia mirabilis ATCC 51599]
 gi|319742372|gb|EFV94785.1| tyrosine recombinase XerD [Lautropia mirabilis ATCC 51599]
          Length = 342

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 51/322 (15%), Positives = 101/322 (31%), Gaps = 35/322 (10%)

Query: 44  IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAH---------WGS--LAVNSR 92
           +    +   G+ PK+    +       +  +    R++           W    L+ N+ 
Sbjct: 11  MEGATAGRQGARPKKADAPAASGGEAQIDAVAQRIRQADADIQSFSDALWLEDGLSKNTL 70

Query: 93  ISFESYFDQIIR-KSGDFDYRKITTKHIRSGVESRKH-----TPSSAIQFLTSMRVLFKW 146
            ++     Q+ R  +       +        +           PSSA + LT ++  ++ 
Sbjct: 71  QAYRRDLVQLARWLAPSTRGVALAEASEADLLAYLADAHGHGKPSSANRRLTVIKRFYRH 130

Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLAFEFLLYS 202
            +R+     +P L +   ++        ++  ++   +        G + R   E L  +
Sbjct: 131 LLREGRRQDDPTLRIRAMRQPARFPATLSEAQVEALLAAPDVETALGLRDRAMLEVLYAT 190

Query: 203 GLRCSDSCRAGVQHLQN-NIFSIKTQKTGTIITVELPDGFMKLLAM----------TPIG 251
           GLR S+     +  +   +       K      V L +     L                
Sbjct: 191 GLRVSELVGLKLSEVSMVDSLVRIVGKGSKERLVPLGEEARAWLVRYLQEARPRLLGARQ 250

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMA 309
            E  F+      M    F +  +  A +AG+    S H +R   AT   + GA    +  
Sbjct: 251 AEAVFVTQRATGMTRQMFWVLIRRHALRAGIEAQLSPHTLRHAFATHLLNHGADLRVVQV 310

Query: 310 TYGWKTVDQAETYTKGADRIRL 331
             G   +   + YT  A R RL
Sbjct: 311 LLGHADISTTQIYTHVA-RARL 331


>gi|153949027|ref|YP_001401219.1| phage integrase family site specific recombinase [Yersinia
           pseudotuberculosis IP 31758]
 gi|152960522|gb|ABS47983.1| site-specific recombinase, phage integrase family [Yersinia
           pseudotuberculosis IP 31758]
          Length = 338

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 63/336 (18%), Positives = 106/336 (31%), Gaps = 39/336 (11%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHES--TFIPAYMSALTGSTPKREYINSP 64
           LPP V +     GK  Y F    G  I L             Y           E +N  
Sbjct: 13  LPPRVYR-----GKSKYEFHPARGGSISLCPLDAPISQVWSDY-----------EKVNDR 56

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
             +  TL  L  ++  S  +  LA+ ++  +  Y  +++   G+     I  +HIR  ++
Sbjct: 57  LPEKVTLNKLTEQFLHSMDFCELAIETQKDYRKYSLKLLPVFGEMSPDNIRPEHIRKYMD 116

Query: 125 SRKHT-PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
            R  T  + A +  T +  +++W   +  V  NPC  V++   K    R  T E+     
Sbjct: 117 KRGITSRTQANREKTFLSRVYRWGYERGMVKGNPCRGVKQFTEKAR-DRYITDEEYDAVY 175

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
               +    R+A E       R +D        L+     IK  KT         +    
Sbjct: 176 QVAPD--VVRVAMEIAYLCLARQADVLALRRDQLREPGIYIKQGKTAARQIKAWSERLRD 233

Query: 244 LLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATKAG-------VNKSAHGV 289
            + +         I            +     F+  ++     A         N + H +
Sbjct: 234 AITLAESLPLKSGISSVYIIHQRTGLRYTRDGFNSKWRKAREVAKKTYPELDFNFTFHDL 293

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
            K       +   T  E  A  G K + Q   Y + 
Sbjct: 294 -KAKGVSDLE--GTLSEKQAISGHKNMGQTARYDRK 326


>gi|18978240|ref|NP_579597.1| integrase-recombinase protein [Pyrococcus furiosus DSM 3638]
 gi|73920477|sp|Q8TZV9|XERC_PYRFU RecName: Full=Probable tyrosine recombinase xerC-like
 gi|18894057|gb|AAL81992.1| integrase-recombinase protein [Pyrococcus furiosus DSM 3638]
          Length = 286

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 37/284 (13%), Positives = 105/284 (36%), Gaps = 18/284 (6%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           ++ E+         + N+   +  +  + + +   +           + + ++ ++  S 
Sbjct: 10  VLEEFATYLELEGKSKNTIRMYTYFLSKFLEEG--YSPTARDALRFLAKLRAKGYSIRSI 67

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS-QP 192
              + +++  FK+   +          +  PK      +  T+E++++      +   + 
Sbjct: 68  NLVVQALKAYFKF---EGLNEE--AERLRNPKIPKTLPKSLTEEEVKKLIEVIPKDKIRD 122

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGF----MKLLA 246
           RL    L  +GLR S+ C   ++ +  +    +++  K G   T+ +P          L 
Sbjct: 123 RLIVLLLYGTGLRVSELCNLKIEDINFEKGFLTVRGGKGGKDRTIPIPQPLLTEIKNYLR 182

Query: 247 MTPIGKETFFINNDKQ---KMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGAT 303
                    F+ + ++   K++        K    KAG+  + H +R   AT   + G  
Sbjct: 183 RRTDDSPYLFVESRRKNKEKLSPKTVWRILKEYGRKAGIKVTPHQLRHSFATHMLERGID 242

Query: 304 AHELMATYGWKTVDQAETYTK-GADRIRLGIKNSRRISSVVDSD 346
              +    G  ++   + YT+  A  ++  ++ +  + +++  +
Sbjct: 243 IRIIQELLGHASLSTTQIYTRVTAKHLKEAVERANLLENLIGGE 286


>gi|319761793|ref|YP_004125730.1| tyrosine recombinase xerd [Alicycliphilus denitrificans BC]
 gi|317116354|gb|ADU98842.1| tyrosine recombinase XerD [Alicycliphilus denitrificans BC]
          Length = 299

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 51/269 (18%), Positives = 91/269 (33%), Gaps = 24/269 (8%)

Query: 86  SLAVNSRISFESYFD----QIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTS 139
            L+ N+  ++          +  +            H+     +R  +   +SA + LT 
Sbjct: 21  GLSRNTLAAYRRDLSLYAGWLAAQQPPLALDATAEHHLSGYFAARHAQTRATSANRRLTV 80

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLA 195
           +R  F WA+R+  +A +P + +   ++     +  T+  ++            G + R  
Sbjct: 81  LRRYFHWALRERRIAQDPTVRLLAARQPLRVPKTLTQAQVEALLHAPDTATALGLRDRTM 140

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAM------- 247
            E +  SGLR S+        L      ++ T K G    V   +   + L         
Sbjct: 141 LELMYASGLRVSELVTLKTFQLGLTEGVLRITGKGGKERLVPFGEEARRWLERYLAEGRG 200

Query: 248 ---TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGA 302
                   +  F+      M+   F +  K  A  AG+    S H +R   AT   + GA
Sbjct: 201 AILAGRQTDDLFVTQRGSAMSRVMFWVIVKKCAQLAGITAPLSPHTLRHAFATHLLNHGA 260

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRL 331
               +    G   +     YT  A R RL
Sbjct: 261 DLRVVQLLLGHADISTTTIYTHVA-RERL 288


>gi|229916183|ref|YP_002884829.1| tyrosine recombinase XerD [Exiguobacterium sp. AT1b]
 gi|229467612|gb|ACQ69384.1| tyrosine recombinase XerD [Exiguobacterium sp. AT1b]
          Length = 295

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 46/269 (17%), Positives = 102/269 (37%), Gaps = 23/269 (8%)

Query: 85  GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVESRKHTPSSA---IQFLT 138
             ++ N+R ++ S   Q    + + G  ++ ++T  HI   +E       ++    + ++
Sbjct: 17  KRMSANTRQAYASDLTQYASTLTQLGVEEWNEVTRSHIVKHIEELSQAGRASSSLRRAVS 76

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK----SFWSEGSQPRL 194
           S+R+             +P L +E PK + +    W++ ++++      +      + R 
Sbjct: 77  SIRMFHHHLKMTGVTTTDPSLYLESPKAEKQLPDTWSQTEVERLLDSVPTSDPLSLRDRA 136

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-ELPDGFMKLLAM------ 247
             E L  +G+R S+     +  LQ  +  ++ +  G    +  +       +        
Sbjct: 137 MLELLYGTGMRVSELLGLDLDDLQFELGYLQCEGKGERARIIPVSSVAQSFVERYIQQAR 196

Query: 248 ---TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302
                   E  F+N    +++   F    K +A  AG+ K  + H +R   AT   + GA
Sbjct: 197 NGLGGRETEALFLNGRGGRLSRQGFWKMIKRRAKLAGIEKEITPHVLRHSFATHLLENGA 256

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRL 331
               +    G   +   + YT   ++ RL
Sbjct: 257 DLRAIQQMLGHADLATTQVYTH-VNKSRL 284


>gi|261227474|ref|ZP_05941755.1| putative integrase from prophage [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|320188707|gb|EFW63367.1| Putative integrase [Escherichia coli O157:H7 str. EC1212]
 gi|323157131|gb|EFZ43254.1| phage integrase family protein [Escherichia coli EPECa14]
 gi|323159604|gb|EFZ45584.1| phage integrase family protein [Escherichia coli E128010]
 gi|326341722|gb|EGD65510.1| Putative integrase [Escherichia coli O157:H7 str. 1044]
          Length = 300

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 49/267 (18%), Positives = 89/267 (33%), Gaps = 17/267 (6%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK-H 128
           T+  L   +  S  +  LA  ++  +  +   ++   G      + T+ +R  ++ R   
Sbjct: 25  TVAKLWHMFMDSPAFTELAPRTQKDYRQHQKALLMVFGKVLADNVKTEQVRIFMDKRGLE 84

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           + + A   L S+  ++ W   + YV  NPC  V +   K   +   T E      +    
Sbjct: 85  SKTQANHELASLSRVYGWGYERGYVKNNPCKGVRKFSLKARTVYI-TDEQYAAIYA--EA 141

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248
             Q R+A E       R  D      Q + +    I+  KTGT    E        + + 
Sbjct: 142 IPQLRIAMEISYLCAARLGDVLELKWQDIMDKGIYIEQNKTGTKQIKEWSPRLRTAIQLA 201

Query: 249 ----PIGKETFFINNDKQKMNATQFSIWFKAKATKA----GVN--KSAHGVRKFSATISA 298
                   E         K+ A   + W+      A    GV    + H + K       
Sbjct: 202 RNVSSCTCEYVINTTKGGKVIAKTLNNWWNQAKRAAEQKVGVPFGCNFHDI-KAKGISDY 260

Query: 299 DAGATAHELMATYGWKTVDQAETYTKG 325
           +   ++ +     G KT +Q   Y + 
Sbjct: 261 E--GSSRDKQIFSGHKTENQVLIYDRK 285


>gi|302387936|ref|YP_003823758.1| integrase family protein [Clostridium saccharolyticum WM1]
 gi|302198564|gb|ADL06135.1| integrase family protein [Clostridium saccharolyticum WM1]
          Length = 295

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 45/271 (16%), Positives = 91/271 (33%), Gaps = 25/271 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTK------HIRSGVESRKHTPSSAIQFLT 138
              + N+ +S++    Q+         R++              +E      ++  + L 
Sbjct: 16  KKTSKNTEVSYQRDLMQLASFLEQQGIREVDKVTKTSLTSYILHLEKEGKATTTISRCLA 75

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FWSEGSQPRL 194
           SM+  F +  ++  +  +P   ++ PK + +     T +++    S       +  + R 
Sbjct: 76  SMKAFFHFECKEGRIQKDPAELLKAPKVEKKAPTILTVDEVNSLLSQPGGETPKELRDRA 135

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254
             E L  +G+R S+        +  +I  I  +       V         L+        
Sbjct: 136 MLELLYATGIRVSELIHLKKTDVNLSIGYITCRDEHKERMVPFGKVAKLALSAYMERGRV 195

Query: 255 FFI----------NNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302
           +F+          N + + M+   F    K    KAG+    + H +R   A      GA
Sbjct: 196 YFLRDQESPWLFTNCNGKSMSRQGFWKIIKFYGDKAGIKADITPHTLRHSFAAHLLRNGA 255

Query: 303 TAHELMATYGWKTVDQAET---YTKGADRIR 330
             H + A  G   +   +    YT+G D  R
Sbjct: 256 DIHAVQAMLGHSDMATTQMYMNYTQGEDLRR 286


>gi|330447418|ref|ZP_08311067.1| tyrosine recombinase XerD [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328491609|dbj|GAA05564.1| tyrosine recombinase XerD [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 298

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 37/265 (13%), Positives = 92/265 (34%), Gaps = 23/265 (8%)

Query: 85  GSLAVNSRISFESYFDQII-----RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
             L+ N+  S+ +   +++           +      +  +  +  + +  +S  + +++
Sbjct: 19  RGLSENTLASYRNDLMKLLNWLKQESRNVINVSVDDLQRYQQWLFDKDYKQTSRARMVSA 78

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195
           +R LF++  R++    +P   +  PK      +  ++  +               + +  
Sbjct: 79  IRRLFQYLHREKMRDDDPSAMLVTPKLPKRLPKDLSEAQVDALLDAPDVNDPIELRDKAM 138

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAMTP----- 249
            E L  +GLR ++     ++++      ++ T K      V + +  +  +         
Sbjct: 139 LELLYATGLRVTELVTLTMENISLRQGVVRITGKGDKERLVPMGENAIDWIEQFIETGRP 198

Query: 250 -----IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATISADAG 301
                   +  F +   ++M    F    K  A  AG++    S H +R   AT   + G
Sbjct: 199 QLLGEKSSDVLFPSRRARQMTRQTFWHRIKHYAVLAGIDAETLSPHVMRHAFATHLLNYG 258

Query: 302 ATAHELMATYGWKTVDQAETYTKGA 326
           A    +    G   +   + YT  A
Sbjct: 259 ADLRVVQMLLGHSDLSTTQIYTHVA 283


>gi|327398928|ref|YP_004339797.1| Tyrosine recombinase xerC [Hippea maritima DSM 10411]
 gi|327181557|gb|AEA33738.1| Tyrosine recombinase xerC [Hippea maritima DSM 10411]
          Length = 279

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 43/271 (15%), Positives = 89/271 (32%), Gaps = 18/271 (6%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
           +  LI  +  S      + N+  S+ +    +     D         +    +  + + P
Sbjct: 3   IDRLIDRFLFSLKVRGFSDNTISSYANDLSLVSNFFKDKMLDDNGVGNFVLWLSQKNYKP 62

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           SS  + L+S R   K+  ++    I+   S++  K   +  R    E +++       G 
Sbjct: 63  SSFNRKLSSFRSFLKFLTKEGLCNID-VSSIKNKKYSRKVPRYIPFETIKKVMEDKKTG- 120

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVEL----PDGFMKL 244
              L  E +  SGLR S+     V  +        ++  K      V +           
Sbjct: 121 ---LFVELIYSSGLRVSELVNLRVSDIIFDAGFIRVR-GKGSKERLVPVGNGTLKRLKSY 176

Query: 245 LAMT------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISA 298
           +             +  F+++  +  +        K    K G++   H +R   AT   
Sbjct: 177 IENARKNIKNSSNNDYLFLSSWGRPFSRQGLWKLIKRSFKKEGIDVHPHMLRHMFATHMI 236

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRI 329
           + GA    +    G +++   + YT   D+ 
Sbjct: 237 ENGANIRAVQEMLGHRSITTTQIYTDITDKA 267


>gi|117928448|ref|YP_872999.1| tyrosine recombinase XerD [Acidothermus cellulolyticus 11B]
 gi|117648911|gb|ABK53013.1| tyrosine recombinase XerD [Acidothermus cellulolyticus 11B]
          Length = 311

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 54/288 (18%), Positives = 103/288 (35%), Gaps = 33/288 (11%)

Query: 69  TTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGVE 124
            T+  L+  Y         LA N+   +     +    + + G  D R +T +HI + + 
Sbjct: 4   RTVGDLVEAYLAHVAVEKGLAKNTVAGYRRDLRRYQEFLEQRGTTDPRAVTEEHITAFLA 63

Query: 125 SR----KHTP----SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
           +        P    SS+ + + ++R L ++A      A +P   V  P       +  T 
Sbjct: 64  ALRTGDADHPPLAVSSSARAVVAVRGLHRFAAMDGITADDPSRDVRPPTPGRRLPKAITV 123

Query: 177 EDMQQFKS----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
            ++++  +          + R   E L  +G R S++    +  L  +   ++ +  G+ 
Sbjct: 124 AEVERLLAAVDGHAPRELRDRALLEVLYGTGARISEAVGLAIDDLDLDAGLVRLRGKGSK 183

Query: 233 ITV-------------ELPDGFMKLLAMTPIG--KETFFINNDKQKMNATQFSIWFKAKA 277
             V              L  G   LLA    G  +   F+N    +++        +  A
Sbjct: 184 QRVVPLGGYARSALREYLTAGRPALLAAARSGSARGAVFLNARGGRLSRQSAWTVLRRAA 243

Query: 278 TKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
            +AG+    S H +R   AT   + GA    +    G  +V   + YT
Sbjct: 244 LRAGLATVISPHTLRHSFATHLLEGGADIRVVQELLGHASVTTTQIYT 291


>gi|325925497|ref|ZP_08186888.1| tyrosine recombinase XerD subunit [Xanthomonas perforans 91-118]
 gi|325544089|gb|EGD15481.1| tyrosine recombinase XerD subunit [Xanthomonas perforans 91-118]
          Length = 323

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 48/273 (17%), Positives = 96/273 (35%), Gaps = 29/273 (10%)

Query: 85  GSLAVNSRISFESYFDQIIR-----KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
             +A  +  S+    + + R       G     +              ++P S  + L++
Sbjct: 38  QGVARQTLESYRRDLEGLARWRDGAHGGLLGIDRAALFDYLRWRTQANYSPRSTARLLST 97

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195
           +R  +   +R    + +P   ++ P+      +  T+  ++   +        G + R  
Sbjct: 98  LRAFYGLCLRDGVRSDDPTTLIDPPQLPRSLPKALTESQIEALLAAPDVDTPAGLRDRAM 157

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-------------ELPDGFM 242
            E +  +GLR S+        +      ++    G+   +              L +   
Sbjct: 158 LELMYAAGLRVSELVNLPAVGVNLRQGVLRVTGKGSKDRLVPLGEESQHWLERYLREARP 217

Query: 243 KLLAMTPI----GKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSAT 295
            L A TP+    G+   FI+  +Q ++  QF    K  A  AG++    S HG+R   AT
Sbjct: 218 LLAANTPVAAVDGQVPLFIDAARQPLSRQQFWALVKRYAAVAGIDPDTVSPHGLRHSFAT 277

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADR 328
              + GA    L    G  ++   + YT  A +
Sbjct: 278 HLLNHGADLRALQMLLGHSSLSTTQIYTLVARQ 310


>gi|302389650|ref|YP_003825471.1| tyrosine recombinase XerC [Thermosediminibacter oceani DSM 16646]
 gi|302200278|gb|ADL07848.1| tyrosine recombinase XerC [Thermosediminibacter oceani DSM 16646]
          Length = 298

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 41/300 (13%), Positives = 94/300 (31%), Gaps = 35/300 (11%)

Query: 75  ISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDF---------DYRKITTKHIRSGVE 124
           I  +    +   + + N+  ++ +   Q I               D   +  +   + ++
Sbjct: 6   IDSFLTYISAAKNQSPNTLKAYANDLGQFIEYLEQNKISKTKTLNDITHLDIRGFLAYLK 65

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
               +  +  + L+++R  F++   +  V+ +P   V+  K   +        +++   S
Sbjct: 66  ESGASKKTIARKLSAIRSFFRYLSTEGLVSEDPTKMVQGMKLPKKLPLFLYPAEIEALLS 125

Query: 185 FWS---EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL---- 237
                  G + R   E L  +G+R S+     ++ +      I     G+   V      
Sbjct: 126 APGQDVLGIRDRAIMELLYATGMRVSELVSLKLKDVNLGANFIIVFGKGSKERVVFFGSK 185

Query: 238 -PDGFMKLLAMTPI------GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288
             +   + L  +          +  F+N +  ++                 +N   S H 
Sbjct: 186 AAESLEEYLRKSRPYLVKNLTCDYLFLNKNGTRLTDRSVRRIIDKYVKLLSLNAKISPHT 245

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
           +R   AT   + GA    +    G  ++   + YT              R+  V D   P
Sbjct: 246 LRHTFATHMLNNGADLKTVQELLGHVSLSTTQIYTHV---------TKERLKEVYDKAFP 296


>gi|237718794|ref|ZP_04549275.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|229451926|gb|EEO57717.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
          Length = 407

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 59/352 (16%), Positives = 115/352 (32%), Gaps = 31/352 (8%)

Query: 8   PPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYI----NS 63
           P F  K   R   +  Y       R           +            + +        
Sbjct: 58  PKFAVKHNRRKENLSLYL--IDKPRTPAERQQNKETLELATKIRAEREQEFKESMLGYRL 115

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG----DFDYRKITTKHI 119
            + +          Y  S     + +  +I+   + D +  +            IT + +
Sbjct: 116 KKDRTVNFLDYFQAYINSYTKKDIRMV-QIALSRFKDFLKEQYPMNEFSIKPELITKEMM 174

Query: 120 RSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR--PWT 175
              V   +       A       + + ++A+  + +  +PC SV   K  ++ +R    +
Sbjct: 175 EQFVAYLQSRSVGEGAKSIYQRFKKVIRYAIDHDVMLKDPCKSVT-CKVDSQMLRKDVLS 233

Query: 176 KEDMQQFKSFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTG- 230
            E++Q+  +   +   P  R AF F LY GLR  D      +++   N +   +  KT  
Sbjct: 234 PEEIQKLAACHYDNENPNVRRAFIFCLYCGLRFCDVKDLTYKNVDYANRLLKFEQSKTKG 293

Query: 231 ----TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284
               + + + L DG + ++   P  K     +               K    +AG++K  
Sbjct: 294 HSASSGVVIPLNDGLLSIIGEAPADKNCLIFDLP----TYESCCKSVKRWVKRAGIDKHI 349

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
           S H  R   A    + GA    + +  G   +   E YT+  D+++    NS
Sbjct: 350 SWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVDKLKEEAINS 401


>gi|21673437|ref|NP_661502.1| integrase/recombinase XerD [Chlorobium tepidum TLS]
 gi|34222899|sp|Q8KET0|XERD_CHLTE RecName: Full=Tyrosine recombinase xerD
 gi|21646539|gb|AAM71844.1| integrase/recombinase XerD [Chlorobium tepidum TLS]
          Length = 304

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 40/265 (15%), Positives = 90/265 (33%), Gaps = 25/265 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVESRKHTPSSAIQFLTS 139
            + + N+R S+ +   + +    +   +         +     +       SS  + +++
Sbjct: 23  RNFSGNTRASYLNDLGRYLAWLHECGVKPEEAAPGDIRKFIQELHEIGLEASSIARNISA 82

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKSFWSEGS---QP 192
           +R   K+ + +    +NP  ++ +PK         T E+M              +   + 
Sbjct: 83  IRSFHKFLLTERLATMNPAENIHQPKLARYLPSVLTIEEMATLLDAPLKRHPTSTFMLRD 142

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM---- 247
           +   EFL  +G+R S+       +L  +   ++   K      V +    +  +      
Sbjct: 143 KAMLEFLYATGVRVSELLGLSRLNLHMDDGFVRVFGKGSKERLVPVGQTAISWMKRYLDE 202

Query: 248 ------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
                 +    +T F+N+    ++        +  A  AG+ K  S H  R   AT   +
Sbjct: 203 LRPGMMSATSHDTIFLNSRGGPLSRMAAWNIVREHAVIAGIEKPISPHTFRHSFATHLLE 262

Query: 300 AGATAHELMATYGWKTVDQAETYTK 324
            GA    +    G  ++   + YT 
Sbjct: 263 GGADLRVVQEMLGHSSIIATQIYTH 287


>gi|260913748|ref|ZP_05920224.1| tyrosine recombinase XerD [Pasteurella dagmatis ATCC 43325]
 gi|260632287|gb|EEX50462.1| tyrosine recombinase XerD [Pasteurella dagmatis ATCC 43325]
          Length = 301

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 45/286 (15%), Positives = 99/286 (34%), Gaps = 30/286 (10%)

Query: 73  WLISEYRKSAHW--GSLAVNSRISFE----SYFDQIIRKSGDFDYR-----KITTKHIRS 121
            LI  +     W    L+ N+  S+     +    + ++S +          I  +    
Sbjct: 5   ALIELFLNDV-WIERKLSQNTVQSYRLDLTALLQWLEKQSEEQPLTLITLDAIDLQTFLG 63

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
              ++ +  +S  + L+++R LF++  R++Y   +P   +  PK  +   +  T++ +  
Sbjct: 64  ERLTQGYKATSTARLLSAIRKLFQYLYREKYRTDDPSAVLSSPKLPSRLPKYLTEQQVTD 123

Query: 182 FKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE 236
             +          + +   E L  +GLR ++     V+++  N   ++   K      V 
Sbjct: 124 LLNAPDVDVPLELRDKAMMELLYATGLRVTELVSLTVENININQGIVRVIGKGNKERIVP 183

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQ----------KMNATQFSIWFKAKATKAGVNK-- 284
           + +     +    +   T  +N              +M    F    K  A  + ++   
Sbjct: 184 IGEEATYWIRQFVLYGRTTLLNGQSSDVLFPSKRAVQMTRQTFWHRIKHYALISEIDLNS 243

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            S H +R   AT   + GA    +    G   +   + YT  A   
Sbjct: 244 LSPHVLRHAFATHLINHGADLRVVQMLLGHSDLSTTQIYTHVAKER 289


>gi|301311630|ref|ZP_07217556.1| putative truncated integrase [Bacteroides sp. 20_3]
 gi|300830371|gb|EFK61015.1| putative truncated integrase [Bacteroides sp. 20_3]
          Length = 312

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 86/224 (38%), Gaps = 20/224 (8%)

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR--PWTKEDMQQFKSFWSEGS 190
           A       + + ++A+  + +  +PC SV   K  ++ +R    + E++Q+  +   +  
Sbjct: 95  AKSIYQRFKKVIRYAIDHDVMLKDPCKSVT-CKVDSQMLRKDVLSPEEIQKLIACHYDNE 153

Query: 191 QP--RLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTG-----TIITVELPDGF 241
            P  R AF F LY GLR  D      +++   N +   +  KT      + + + L DG 
Sbjct: 154 NPTIRRAFIFCLYCGLRFCDVKDLTYKNVDYANRLLKFEQSKTKGHSASSGVVIPLNDGL 213

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
           + ++   P  K     +               K    +AG++K  S H  R   A    +
Sbjct: 214 LSIIGEAPADKNCLIFDLP----TYESCCKSVKRWVKRAGIDKHISWHCARHSFAVNILN 269

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343
            GA    + +  G   +   E YT+  D  +L  +    +  + 
Sbjct: 270 NGANIKTVASLLGHSGLKHTEKYTRAVD--KLKEEAINSLPELK 311


>gi|218441747|ref|YP_002380076.1| integrase [Cyanothece sp. PCC 7424]
 gi|218174475|gb|ACK73208.1| integrase family protein [Cyanothece sp. PCC 7424]
          Length = 294

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 46/248 (18%), Positives = 97/248 (39%), Gaps = 11/248 (4%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLT----SMRVL 143
           +  S+ ++ S+  Q +   G    +++  + ++  V S +++       L     +++ L
Sbjct: 35  SKTSQNTYASHIKQFLEYVG-KPLKELKLEDMQLWVSSLENSQRYKTATLKLKINTVKSL 93

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGI-RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202
             +  +  Y+  N   +V+ P  K E   R  ++ ++       ++  + R+  + +   
Sbjct: 94  LTFGQKVGYLQFNIGSAVKPPNPKNELSSRMLSETEVTTLIEKANQNQRDRIILKLMYVC 153

Query: 203 GLRCSDSCRAGVQHL---QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN 259
           G+R S+      + L    N   +I   K G    V +P+     +   P   +  FI+ 
Sbjct: 154 GMRVSEVVGLNWRDLVPNNNGGLAIVLGKGGKTRVVLIPEKLWLDIQQLPKTDDAVFISR 213

Query: 260 DKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVD 317
            K +++        K  A +AG+N   S H +R   AT S + G   H L  + G   + 
Sbjct: 214 KKNRISRKTVHYMIKQYAKQAGINGNVSPHWLRHSHATHSIERGCNLHLLQQSLGHSNLS 273

Query: 318 QAETYTKG 325
               Y   
Sbjct: 274 ITSRYLHA 281


>gi|221194870|ref|ZP_03567927.1| tyrosine recombinase XerD [Atopobium rimae ATCC 49626]
 gi|221185774|gb|EEE18164.1| tyrosine recombinase XerD [Atopobium rimae ATCC 49626]
          Length = 313

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 42/278 (15%), Positives = 101/278 (36%), Gaps = 32/278 (11%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVESRKHTPS 131
            Y ++    +L+ N+  ++              +         + +   S ++  +++  
Sbjct: 19  AYLRTVR--NLSDNTTRAYSVDLASYISWCKREELDPLQATHRSLRAYLSYLDQARYSAR 76

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS---- 187
           +  + L+++R  +KW  +++Y+ ++P L +  P+      +  + ED+Q+          
Sbjct: 77  TLNRHLSALRGFYKWLNKEKYLEVDPSLILTSPRTSRRLPQTMSDEDVQKLLLSCDTDTA 136

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVEL----PDGFM 242
            G + R   E +  +G R S+      + +  +   ++   K      V L     D   
Sbjct: 137 VGLRDRAILECMYATGARISEISHLDREDVDMSQGVVRLFGKGSKERDVPLYKTARDWLE 196

Query: 243 KLLAMT--------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSA 286
             +                 P  ++  F++    +M+A      F+    KAG++   + 
Sbjct: 197 AYMYGARSQLIGKGRKSLRNPREEKALFVSIRGHRMSADVLRKMFETYVKKAGLDPMLTP 256

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           H +R   AT     GA    +    G +++   + YT 
Sbjct: 257 HAMRHTFATELLSGGADLRVVQELLGHQSLSTTQIYTH 294


>gi|134093692|ref|YP_001098767.1| site-specific tyrosine recombinase [Herminiimonas arsenicoxydans]
 gi|133737595|emb|CAL60638.1| tyrosine recombinase XerD [Herminiimonas arsenicoxydans]
          Length = 309

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 47/268 (17%), Positives = 87/268 (32%), Gaps = 23/268 (8%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS-----GVESRKHTPSSAIQFLTSM 140
            LA NS  ++                + +   H                 +S+ + L  +
Sbjct: 32  GLAKNSLEAYRRDLRLFAVWLQAERGKTLLAAHADDVNAYFFARHEVTKATSSNRRLAVL 91

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAF 196
           +  ++ A+RQ  ++ +PCL +   K+     +  ++  ++   +        G + R   
Sbjct: 92  KRFYQLALRQNRISDDPCLKMRSAKQPLRIPKTLSEAQVEALLAAPDVTTPLGLRDRTML 151

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAMTPIG---- 251
           E +  SGLR ++        +  N   ++ T K G    V   +     +          
Sbjct: 152 ELMYASGLRVTELVLLKSIEVGMNEGVLRITGKGGKTRLVPFGEEARVWIERYLKEARPL 211

Query: 252 ------KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGAT 303
                  +  F+      M    F    K  A  A +N   S H +R   AT   + GA 
Sbjct: 212 ILDGQIDDALFVTARGAAMTRQMFWTLIKKHAAAAEINAPLSPHTLRHAFATHLLNHGAD 271

Query: 304 AHELMATYGWKTVDQAETYTKGADRIRL 331
              +    G   +   + YT  A R RL
Sbjct: 272 LRVVQMLLGHSDISTTQIYTHVA-RERL 298


>gi|162447539|ref|YP_001620671.1| site-specific tyrosine recombinase [Acholeplasma laidlawii PG-8A]
 gi|161985646|gb|ABX81295.1| site-specific tyrosine recombinase [Acholeplasma laidlawii PG-8A]
          Length = 301

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 53/271 (19%), Positives = 102/271 (37%), Gaps = 24/271 (8%)

Query: 81  SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI---QFL 137
           S +     +     +ES+ D+  +     D   I +KHI   ++S K    SA    + L
Sbjct: 19  SKNTIDAYMRDLKDYESFLDKYHKL---KDVDNIQSKHIEGYLKSIKKKGLSAKTISRKL 75

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKSFWSEGSQPR 193
           TS++   K+ + ++ V  +    + RPK +       + +++    +      + G +  
Sbjct: 76  TSIKSFHKFLLMEKEVDEDVTHKIARPKIEKTLPTVLSVDEVISILEVIDKSTTLGLRNM 135

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLA------ 246
              E +  SGLR S+     ++ +       I T K      V + D  +  +       
Sbjct: 136 ALLELIYGSGLRVSELLNIKLKDIHMQQSYVIVTGKGSKERMVPISDMAIIAIRNYLVKA 195

Query: 247 ---MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADA 300
              +     +  FINN  + ++   F    K  A++A ++    S H +R   AT   + 
Sbjct: 196 RDDLIKEKTDYLFINNQGKTLSRVGFFKVLKKLASEANLDPEKVSPHTLRHSFATHLLEN 255

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRL 331
           G     L    G + +   + YT    + RL
Sbjct: 256 GMDLRSLQNLLGHEDISTTQIYTH-ISQSRL 285


>gi|299530798|ref|ZP_07044213.1| tyrosine recombinase XerD [Comamonas testosteroni S44]
 gi|298721314|gb|EFI62256.1| tyrosine recombinase XerD [Comamonas testosteroni S44]
          Length = 318

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 53/275 (19%), Positives = 99/275 (36%), Gaps = 24/275 (8%)

Query: 86  SLAVNSRISFESYF----DQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTS 139
            L+ N+  ++          + R              ++    +R      +S+ + LT 
Sbjct: 40  GLSRNTLSAYRRDLTATARWLARLQPPKALDAALEGDLQGYFTARVEGTKATSSNRRLTV 99

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLA 195
           +R  F WA+R++ +A +P + +   K+     +  T+E ++            G + R  
Sbjct: 100 LRRYFHWALREKRIAADPTVRMLAAKQPPRMPKTLTQEQVEALLDAPDVDSPLGLRDRAM 159

Query: 196 FEFLLYSGLRCSDSC--RAGVQHLQNNIFSIKTQKTGTIITVE-------LPDGFMKLLA 246
            E +  SGLR S+    R     L++ +  +  +     +          L     +  A
Sbjct: 160 LELMYASGLRVSELVGVRMHELDLRSGVLRVTGKGRKERLVPFGQEAQHWLERYLQQARA 219

Query: 247 MTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGA 302
               G++T   F+      M+   F +  K  A  AG+N   S H +R   AT   + GA
Sbjct: 220 AILGGQQTEEVFVTQRGAGMSRVMFWVIVKKCAQIAGINSPLSPHTLRHAFATHLLNHGA 279

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
               +    G   +     YT  A R RL   ++ 
Sbjct: 280 DLRVVQMLLGHADISTTTIYTHVA-RERLKALHAE 313


>gi|254172394|ref|ZP_04879069.1| integrase/recombinase [Thermococcus sp. AM4]
 gi|214033323|gb|EEB74150.1| integrase/recombinase [Thermococcus sp. AM4]
          Length = 283

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 42/288 (14%), Positives = 100/288 (34%), Gaps = 20/288 (6%)

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128
                +I E+         + N+   +  Y  + + + G  D+R        + +    +
Sbjct: 3   GEHSTVIEEFATYLDLEGKSPNTIRMYTYYVRRYLEQGGGLDFRS--ALRFLARLRREGY 60

Query: 129 TPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           +  S    + ++R  F++  + +E         ++ PK      +  T E++++  S   
Sbjct: 61  SNRSLNLVVQALRAYFRFEGLDEE------AEKLKPPKVPKSLPKALTPEEVRKILSVIP 114

Query: 188 E-GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKL 244
               + RL    L  +GLR S+ C      +     I +++  K      V +     + 
Sbjct: 115 LTRRRDRLIVLLLYGAGLRVSELCNLKRGDVDLDRGIITVRGGKGAKDRVVPISPALAEE 174

Query: 245 LAM----TPIGKETFFINNDKQ---KMNATQFSIWFKAKATKAGVNKSAHGVRKFSATIS 297
           +           E   +   +    +++             KAGV  + H +R   AT  
Sbjct: 175 IRAYLRERKDNSEYLLVEVRRGTKDRLSPKTVWYLLNRYGKKAGVKVTPHMLRHSFATHM 234

Query: 298 ADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSRRISSVVD 344
            + G     +    G   +   + YTK   + ++   + ++ + S+++
Sbjct: 235 LERGVDIRAIQELLGHSNLSTTQIYTKVTVEHLKKAQEKAKLLESLME 282


>gi|330826574|ref|YP_004389877.1| Tyrosine recombinase xerC [Alicycliphilus denitrificans K601]
 gi|329311946|gb|AEB86361.1| Tyrosine recombinase xerC [Alicycliphilus denitrificans K601]
          Length = 299

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 51/269 (18%), Positives = 91/269 (33%), Gaps = 24/269 (8%)

Query: 86  SLAVNSRISFESYFD----QIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTS 139
            L+ N+  ++          +  +            H+     +R  +   +SA + LT 
Sbjct: 21  GLSRNTLAAYRRDLSLYAGWLAAQQPPLALDATAEHHLSGYFAARHAQTRATSANRRLTV 80

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLA 195
           +R  F WA+R+  +A +P + +   ++     +  T+  ++            G + R  
Sbjct: 81  LRRYFHWALRERRIAQDPTVRLLAARQPLRVPKTLTQAQVEALLHAPDTATALGLRDRTM 140

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAM------- 247
            E +  SGLR S+        L      ++ T K G    V   +   + L         
Sbjct: 141 LELMYASGLRVSELVTLKTFQLGLAEGVLRITGKGGKERLVPFGEEARRWLERYLAEGRG 200

Query: 248 ---TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGA 302
                   +  F+      M+   F +  K  A  AG+    S H +R   AT   + GA
Sbjct: 201 AILAGRQTDDLFVTQRGSAMSRVMFWVIVKKCAQLAGITAPLSPHTLRHAFATHLLNHGA 260

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRL 331
               +    G   +     YT  A R RL
Sbjct: 261 DLRVVQLLLGHADISTTTIYTHVA-RERL 288


>gi|77165718|ref|YP_344243.1| tyrosine recombinase XerD [Nitrosococcus oceani ATCC 19707]
 gi|254433312|ref|ZP_05046820.1| tyrosine recombinase XerD [Nitrosococcus oceani AFC27]
 gi|76884032|gb|ABA58713.1| Tyrosine recombinase XerD [Nitrosococcus oceani ATCC 19707]
 gi|207089645|gb|EDZ66916.1| tyrosine recombinase XerD [Nitrosococcus oceani AFC27]
          Length = 305

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 48/274 (17%), Positives = 92/274 (33%), Gaps = 23/274 (8%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESRKHTPSSAIQFLTSM 140
            LA N+  ++    ++  R         I  +        +          S  + ++S+
Sbjct: 28  GLAENTLAAYRRDLERFSRWLHSQGRTLIGAQREDLLAYLAHRLEGGDKSRSVARSVSSL 87

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAF 196
           R  +++ + ++    +P   VE P+         ++E+++   +      S G + R   
Sbjct: 88  RRFYRYLMGEKIRDNDPSDRVESPRLGRLLPESLSEEEVEALLAAPKTEDSLGLRDRTML 147

Query: 197 EFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET- 254
           E L  +GLR S+     +  L         + K      V L +  +  L          
Sbjct: 148 ETLYATGLRVSELVNLTLPQLNPRQGVVYLSGKGNKERLVPLGEVALSWLDRYCREARLG 207

Query: 255 ---------FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGAT 303
                     F+      M+   F    K  A ++G+ K  S H +R   AT   + GA 
Sbjct: 208 LVRSQVNEILFLTRRGGAMSRQAFWYLIKRYARQSGIQKALSPHTLRHAFATHLLNHGAD 267

Query: 304 AHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
              +    G   +   + YT  A R RL   + +
Sbjct: 268 LRVVQILLGHADLSTTQIYTHVA-RARLQQLHQQ 300


>gi|294664569|ref|ZP_06729911.1| tyrosine recombinase [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
 gi|292605653|gb|EFF48962.1| tyrosine recombinase [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
          Length = 323

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 45/273 (16%), Positives = 92/273 (33%), Gaps = 29/273 (10%)

Query: 85  GSLAVNSRISFESYFDQIIR-----KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
             +A  +  S+    + + R       G     +              ++P S  + L++
Sbjct: 38  QGVARQTLESYRRDLEGLARWRDGAGGGLLGIDRAALFDYLRWRTRANYSPRSTARLLST 97

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195
           +R  +   +R    + +P   ++ P+      +  T+  ++   +        G + R  
Sbjct: 98  LRAFYGLCLRDGVRSDDPTALIDPPQLPRSLPKALTESQIEALLAAPDLDTPAGLRDRAM 157

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-ITVEL---------------PD 239
            E +  +GLR S+        +      ++    G+    V L                 
Sbjct: 158 LELMYAAGLRVSELVNLPAVGVNLRQGVLRVTGKGSKDRLVPLGEESQHWLERYLREARP 217

Query: 240 GFMKLLAMTPIGKET-FFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSAT 295
                  +T +  +   FI+  +Q ++  QF    K  A  AG++    S HG+R   AT
Sbjct: 218 LLAANKPVTAVDGQVPLFIDVSRQPLSRQQFWALVKRYAAAAGIDPVTVSPHGLRHSFAT 277

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADR 328
              + GA    L    G  ++   + YT  A +
Sbjct: 278 HLLNHGADLRALQMLLGHSSLSTTQIYTLVARQ 310


>gi|161506408|ref|YP_001573520.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160867755|gb|ABX24378.1| hypothetical protein SARI_04606 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 298

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 44/265 (16%), Positives = 90/265 (33%), Gaps = 23/265 (8%)

Query: 85  GSLAVNSRISFESYFD---QIIRKSGD--FDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
            +LA N+  ++          +R  G      +    + + +      +  +S+ + L++
Sbjct: 19  RNLAENTLSAYRRDLSMVVAWLRHRGKTLATAQADDLQTLLAERVEGGYKATSSARLLSA 78

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195
           MR  F+   R++Y   +P   +  PK      +  ++  +++             + +  
Sbjct: 79  MRRFFQHLYREKYREDDPSAQLASPKLPQRLPKDLSEAQVERLLQAPLIEQPLELRDKAM 138

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKET 254
            E L  +GLR S+     +  +      ++   K      V L +  +  L         
Sbjct: 139 LEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRP 198

Query: 255 FFIN----------NDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG 301
           + +N             Q+M    F    K  A  AG++    S H +R   AT   + G
Sbjct: 199 WLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHG 258

Query: 302 ATAHELMATYGWKTVDQAETYTKGA 326
           A    +    G   +   + YT  A
Sbjct: 259 ADLRVVQMLLGHSDLSTTQIYTHVA 283


>gi|255011581|ref|ZP_05283707.1| putative integrase [Bacteroides fragilis 3_1_12]
 gi|313149409|ref|ZP_07811602.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313138176|gb|EFR55536.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 407

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 61/352 (17%), Positives = 117/352 (33%), Gaps = 31/352 (8%)

Query: 8   PPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYI----NS 63
           P F  K   R   +  Y       R           +   M        + +        
Sbjct: 58  PKFAVKHNRRKENLSLYL--IDKPRTPAERQQNKETLELAMRIRAEREQEFKESMLGYRL 115

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG----DFDYRKITTKHI 119
            + +          Y  S     + +  +I+F  + D +  +            IT + +
Sbjct: 116 KKDRAVNFLDYFQAYINSYTKKDIRMV-QIAFSRFKDFLKEQYPMNEFSIKPELITKEMM 174

Query: 120 RSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR--PWT 175
              V   +       A       + + ++A+  + +  +PC SV   K  ++ +R    +
Sbjct: 175 EQFVAYLQSRSVGEGAKSIYQRFKKVIRYAIDHDVMLKDPCKSVT-CKVDSQMLRKDVLS 233

Query: 176 KEDMQQFKSFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTG- 230
            E++Q+  +   +   P  R AF F LY GLR  D      +++   N +   +  KT  
Sbjct: 234 PEEIQKLMACHYDNENPTIRRAFIFCLYCGLRFCDVKDLTYKNVDYANRLLKFEQSKTKG 293

Query: 231 ----TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284
               + + + L DG + ++   P  K     +               K    +AG++K  
Sbjct: 294 HSASSGVVIPLNDGLLSIIGEAPADKNCLIFDLP----TYESCCKSVKRWVKRAGIDKHI 349

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
           S H  R   A    + GA    + +  G   +   E YT+  D+++    NS
Sbjct: 350 SWHCARHSFAVNILNNGANIKTVASLLGHNGLKHTEKYTRAVDKLKEEAINS 401


>gi|218885463|ref|YP_002434784.1| tyrosine recombinase XerD [Desulfovibrio vulgaris str. 'Miyazaki
           F']
 gi|218756417|gb|ACL07316.1| tyrosine recombinase XerD [Desulfovibrio vulgaris str. 'Miyazaki
           F']
          Length = 290

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 53/228 (23%), Positives = 82/228 (35%), Gaps = 16/228 (7%)

Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
               +  R  T  +  + L+++R LF   V Q  +A +P   +E PK         T+++
Sbjct: 51  YIVDLRRRGLTSRTLSRHLSALRGLFAHGVAQGQLAADPLRYLENPKLPRTLPDVLTRDE 110

Query: 179 MQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTII 233
           M    +        G + R   E L  SGLR S+ C             ++   K     
Sbjct: 111 MAAVLARPDLSDRLGFRDRTMLELLYASGLRVSELCGLRPLDFDPMTGLVRVFGKGSKER 170

Query: 234 TVELPDGFMKLLAMTPIG--------KETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284
            V + D   KLL+             ++  F+N   + +         K    +AG+ K 
Sbjct: 171 IVPVHDTAAKLLSAYIRDWRPAFRPVEDALFLNRSGKGLTRQAVWKVVKRHVAEAGIRKD 230

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330
            S H  R   AT   D GA    +    G   +   E YT   ADR+R
Sbjct: 231 ISPHTFRHSFATHLLDGGADLRTVQMLLGHADIAATEIYTHVQADRLR 278


>gi|260856279|ref|YP_003230170.1| integrase [Escherichia coli O26:H11 str. 11368]
 gi|260868958|ref|YP_003235360.1| putative integrase [Escherichia coli O111:H- str. 11128]
 gi|257754928|dbj|BAI26430.1| integrase [Escherichia coli O26:H11 str. 11368]
 gi|257765314|dbj|BAI36809.1| putative integrase [Escherichia coli O111:H- str. 11128]
 gi|323156505|gb|EFZ42659.1| integrase [Escherichia coli EPECa14]
 gi|323176845|gb|EFZ62435.1| integrase [Escherichia coli 1180]
          Length = 356

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 61/341 (17%), Positives = 113/341 (33%), Gaps = 23/341 (6%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHE---STFIPAYMSALTGSTPKREYINS 63
           LPP +     R+     Y     G+   L        +  I A +  L+G+  +      
Sbjct: 12  LPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELLSGNRRESLIDRI 68

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
                 TL   +  Y        +   + + + S    I RK  D     I+TK + + +
Sbjct: 69  KGADAITLHAWLDRYETILSERGIRPKTLLDYASKIRAIRRKLPDKPLADISTKEVAAML 128

Query: 124 ESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
            +   +   +SA    +++  +F+ A+ + +VA NP  +    K +    R    E +  
Sbjct: 129 NTYVAEGKAASAKLIRSTLVDVFREAIAEGHVATNPVTATRTAKSEVRRSRLTANEYVAI 188

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241
           + +        RLA +  + +G R  D CR     + +N   I+  KTG  + + L    
Sbjct: 189 YHAAEPLPIWLRLAMDLAVVTGQRVGDLCRMKWSDINDNHLHIEQGKTGAKLAIPLTLTI 248

Query: 242 MKL---------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NKSAH 287
             L               G ET   +   + ++    S +F      +G+       + H
Sbjct: 249 DALNISLADTLQKCREASGSETIIASTHHEPLSPKTVSKYFTKARNASGLSFDGDPPTFH 308

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
            +R   +                 G K+   A  Y     R
Sbjct: 309 ELR-SLSARLYRNQIGDKFAQRLLGHKSDSMAARYRDSRGR 348


>gi|253576347|ref|ZP_04853677.1| tyrosine recombinase XerD [Paenibacillus sp. oral taxon 786 str.
           D14]
 gi|251844240|gb|EES72258.1| tyrosine recombinase XerD [Paenibacillus sp. oral taxon 786 str.
           D14]
          Length = 323

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 43/264 (16%), Positives = 92/264 (34%), Gaps = 26/264 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDF---DYRKITTKHIRSGVESRKH---TPSSAIQFLT 138
             L+  +R S+     Q I         DYR++T   I       K     P++  +   
Sbjct: 16  RGLSEATRESYARDLKQYISYLQSKQISDYRQVTRAGILLYFAYLKDLGKAPATIQRVSV 75

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194
           ++R  F++ +++  +  +P + +E PK + +  +  T E+ ++           G + + 
Sbjct: 76  TLRAFFRYLLQERRIEQDPFIMLEMPKVEKKPPQTLTVEETERLLEAPKPDTPLGLRDKA 135

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK-------------TGTIITVELPDGF 241
             E L  +G+R S+        +   +  ++                T   + + L +G 
Sbjct: 136 MLELLYATGIRVSELISLNKDDVNLELHFLRCTGERGKERILPFGGVTAEWLDLYLREGR 195

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISAD 299
             L+          F N    +++   F    K    +AG+  + + H +R   A    +
Sbjct: 196 SHLILDE-RENPALFPNRRGGRISRQGFWKLMKKYGQEAGITSDITPHTLRHSFAVHLLE 254

Query: 300 AGATAHELMATYGWKTVDQAETYT 323
            GA    +    G       + Y 
Sbjct: 255 RGADVRSVQELLGHSDASTIQMYV 278


>gi|167561800|ref|ZP_02354716.1| site-specific tyrosine recombinase XerD [Burkholderia oklahomensis
           EO147]
          Length = 325

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 53/270 (19%), Positives = 93/270 (34%), Gaps = 26/270 (9%)

Query: 85  GSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGVESRKH-TPSSAIQFLTSM 140
             L+ N+  ++        Q +      +        +   + +R     +S+ + L+  
Sbjct: 48  HGLSRNTLDAYRRDLQLFAQWLAAQHAENVDHANEAMLTGYIAARSDGKATSSNRRLSVF 107

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAF 196
           R  + WAVR+   A++P L +   K+        ++  ++   +        G + R   
Sbjct: 108 RRYYGWAVREHRAAVDPTLRIASAKQAPRFPSTLSEAQVEALLAAPDVDTPLGLRDRTML 167

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-------------ITVELPDGFMK 243
           E +  SGLR S+        +  N   ++    G+              I   L DG   
Sbjct: 168 ELMYASGLRVSELVTVKSVEVGLNEGVVRVTGKGSKERLVPFGEVAHGWIERYLRDGRPA 227

Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAG 301
           LL       +  F+      M   QF    K  A +A V  + S H +R   AT   + G
Sbjct: 228 LLGA--RAADALFVTARGDGMTRQQFWNIIKRHAQQADVRAHLSPHTLRHAFATHLLNHG 285

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRL 331
           A    +    G   +   + YT  A R RL
Sbjct: 286 ADLRVVQLLLGHSDISTTQIYTHVA-RERL 314


>gi|254453341|ref|ZP_05066778.1| putative integrase for prophage CP-933U [Octadecabacter antarcticus
           238]
 gi|198267747|gb|EDY92017.1| putative integrase for prophage CP-933U [Octadecabacter antarcticus
           238]
          Length = 358

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 62/345 (17%), Positives = 115/345 (33%), Gaps = 33/345 (9%)

Query: 3   PSLRLPPFVTKER--TRHGKIIYYFRKGHGRRI---RLPYPHESTFIPAYMSALTGSTPK 57
           P   LP  V + R     G   +++    G +    + P P E  F  A+          
Sbjct: 2   PRSNLPKGVHRVRRKVVSGVRYHFYAWRGGPKFWEGKEPNPKEPEFFHAFSQC------- 54

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK 117
                SP +  TT   L+ ++  SA     A  S+     + +   ++           +
Sbjct: 55  -GMPLSPAEYLTTH--LVDDFFSSASLPK-AERSKADIRKWLEFFRQEFEADPVAMFEER 110

Query: 118 HIRSGVESRK----HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
             R  V S +    H+P       T    L  WAV +  +  + C  +++  +       
Sbjct: 111 ASRGEVNSWRKKWLHSPKQHDMAGTHATRLLNWAVEEGKLKEHHCHKLKKLYQSNRTEII 170

Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN----NIFSIKTQKT 229
           WT  D+ QF     +  Q          +GLR +D  +  +   ++         +T K 
Sbjct: 171 WTNGDIAQFNKHAPKWVQ--RILAAGCETGLRAADLVQVKMDQFEDTPHGKRLRFRTSKR 228

Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN------ 283
           G I  +       +L++ TP  +E   ++   + + A   S        +A +       
Sbjct: 229 GQIAYIPATSALEQLISETPEEQEILLVSELGRPLTARWASNQITKWRREAQIPPWIDGR 288

Query: 284 -KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
            K+    R  +AT   +A  +  ++    GW     A+     A 
Sbjct: 289 EKTLSDTRGTAATRLLNADLSLRQIAVLMGWSVRYAAQVIEHYAQ 333


>gi|254440057|ref|ZP_05053551.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
 gi|198255503|gb|EDY79817.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
          Length = 315

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 47/284 (16%), Positives = 93/284 (32%), Gaps = 28/284 (9%)

Query: 74  LISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV---ESRKHT 129
            I  + ++ A     A N+++++         +     +  +T  H+   +   ++    
Sbjct: 11  WIQAFLEAQAAELDAATNTQLAYARDLIDFSERLKGIHFAAVTQDHVEKYLIWCDAHGLA 70

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW--- 186
            S+  + L++++ LF++A  + +   NP + V  P R     +  + +++    +     
Sbjct: 71  KSTRARRLSAIKQLFRFAFEEGWRVDNPAIQVSGPGRDKRLPKTLSHDEVDALLNAARDA 130

Query: 187 -SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKL 244
             E  +     E L  +G+R ++     V   + +    +   K      V L       
Sbjct: 131 KKEPLRTTCLMELLYATGMRVTELVSLPVSAARGDPRMLLVRGKGDKERMVPLSPPARAA 190

Query: 245 LAM----------------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKS 285
            A+                TP  K  F        +    F    K  A   GV     +
Sbjct: 191 TAIWLKTRDRTEDEAFKDGTPRSKFLFPSRGKLGHLTRQSFFNLIKDLALAGGVPPFKAT 250

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            H +R   AT   + GA    +    G   V   E YT   D  
Sbjct: 251 PHTMRHAFATHLLEGGADLRSIQTLLGHADVATTEIYTHVLDER 294


>gi|298368470|ref|ZP_06979788.1| tyrosine recombinase XerD [Neisseria sp. oral taxon 014 str. F0314]
 gi|298282473|gb|EFI23960.1| tyrosine recombinase XerD [Neisseria sp. oral taxon 014 str. F0314]
          Length = 292

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 46/263 (17%), Positives = 97/263 (36%), Gaps = 18/263 (6%)

Query: 85  GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRV 142
             L+ N+  S+    +++  +   G  D+     + + + +   +   SS  + L++ + 
Sbjct: 18  HRLSQNTLQSYRRDLEKVAARLRQGGKDWFGAAAEDLAAAIYVPEEKASSQARALSACKR 77

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFEF 198
           L+ W    E  A NP   +  P ++       T+  +++  +        G + +   E 
Sbjct: 78  LYAWLEETEKRADNPTRFLTSPHKEQPLPGLITEAQIEKLLAAPDVDTPHGLRDKTLLEV 137

Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKETF-- 255
           +  +GLR +++ +  +  L  N   I T  K      V L +  +  +            
Sbjct: 138 MYATGLRVTEAVKLKMSDLDLNKGWINTIGKGDKQRYVPLGEEAVYWIERYCAESRPLLL 197

Query: 256 --------FINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHE 306
                   F++  K  ++     +  K  A  AG+   S HG+R   AT   + GA    
Sbjct: 198 KNKICDELFVSQKKSGISRQLAWMIVKEYADAAGIRSLSPHGLRHAFATHLVNHGADLRV 257

Query: 307 LMATYGWKTVDQAETYTKGADRI 329
           +    G   +   + YT  A++ 
Sbjct: 258 VQMLLGHADISTTQIYTHVANQR 280


>gi|115380783|ref|ZP_01467658.1| integrase [Stigmatella aurantiaca DW4/3-1]
 gi|115362213|gb|EAU61573.1| integrase [Stigmatella aurantiaca DW4/3-1]
          Length = 253

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 85/227 (37%), Gaps = 18/227 (7%)

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
            + +R  +  S  + L ++R   ++ + +++   +P   ++ P+   +     T E+++Q
Sbjct: 2   QLGARGLSKRSQARHLAAVRGFHRFLIAEKHAEKDPTEDLDTPRSARKLPSFLTLEEVEQ 61

Query: 182 FKS----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVE 236
             +        G + +   E L  +GLR S+ C  G+  +Q     +  +  G+    V 
Sbjct: 62  LLAAPDERHPTGMRDKAMLELLYATGLRVSELCSLGINDVQLGAGYLVAKGKGSKERVVP 121

Query: 237 LPDGFMKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284
           +    ++ +                  + FI           F    K  A KAG+ K  
Sbjct: 122 VGSVAVEKVQAYLGGPRQHLLGKRQSRSLFITPRGGAFTRQGFWKLLKRYALKAGIRKPI 181

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           S H +R   AT   + GA    + A  G   +   + YT   +  RL
Sbjct: 182 SPHKLRHSFATHLVERGADLRAVQAMLGHADLATTQIYTH-VNSARL 227


>gi|198284552|ref|YP_002220873.1| tyrosine recombinase XerD [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218667700|ref|YP_002427220.1| tyrosine recombinase XerD [Acidithiobacillus ferrooxidans ATCC
           23270]
 gi|198249073|gb|ACH84666.1| tyrosine recombinase XerD [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218519913|gb|ACK80499.1| tyrosine recombinase XerD [Acidithiobacillus ferrooxidans ATCC
           23270]
          Length = 302

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 44/275 (16%), Positives = 99/275 (36%), Gaps = 23/275 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVESRKHTPSSAIQFLTS 139
            +L  N+  ++     Q+     ++D    T        I            S ++ L+S
Sbjct: 24  KNLGENTLTAYRQDLLQVAAALAEWDLTLTTADDGALARILGQRLQSGAALRSVVRLLSS 83

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195
           +R  + +A R+ +V+ +P  +++ P+         ++ +++   +        G +    
Sbjct: 84  VRRFYGYAEREGWVSRDPSRNLQSPRIGRVLPHVLSETEIEALLAAPDCTHPLGLRDAAM 143

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPD-------GFMKLLAM 247
            E +   GLR S+      + +  +    +   K      V + +        ++++   
Sbjct: 144 LELMYACGLRVSELVNLETRQVDLSADMVVVFGKGRKERLVPMGEVAAGRVTQYLQMGRP 203

Query: 248 TPIGKE---TFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302
             +G+      F+      M   +F    +  A  AG+ +  S H +R   AT   + GA
Sbjct: 204 QILGQRISAALFVTGRGAAMTRQRFWQNIERYARSAGITQTVSPHSLRHAFATHLLNHGA 263

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
               +    G   +   E YT  A + RL   +++
Sbjct: 264 DLRSVQLMLGHAALSTTEIYTHVA-QARLKALHAK 297


>gi|206603937|gb|EDZ40417.1| Integrase [Leptospirillum sp. Group II '5-way CG']
          Length = 388

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 55/316 (17%), Positives = 99/316 (31%), Gaps = 15/316 (4%)

Query: 19  GKIIYYFR-KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISE 77
           G  I++      G+RIR     ++     Y    T S          RK       L  +
Sbjct: 17  GSGIWWVDFWHEGKRIRKKVGPKAQARAVYERLKTESRLGTLVPKPVRKHEPLFGELAEQ 76

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAI 134
           Y +   +  L    +          +   GD     +    +   +E      + P++  
Sbjct: 77  YIR---YADLHHKRKGDDTPRLKWWLDAFGDKLALTLKPYMVEEVMEKMNKEGYKPATIA 133

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
           + L  ++ ++  AV+ E +  NP   V  PK     +R  T +  ++      E   P  
Sbjct: 134 RCLVVLKAVYNRAVKNEIIERNPIARVFAPKFDNSLVRYLTTDQEERLFEALPERLHP-- 191

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTP--- 249
                L++G R  +  +   + +        ++  K+G    V +     ++L   P   
Sbjct: 192 IVTVALHTGCRQGELLKLVWEDVDFNAGTIFLRDTKSGDSRRVLMNSKVQEVLLALPGRD 251

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELM 308
                 F +     M        F     KAG+     H +R   A+  A  GA    L 
Sbjct: 252 TPGAPVFTDTLGGPMEGRNLRRDFDRAIKKAGLAPFRFHDLRHTFASRLAMMGANDRTLQ 311

Query: 309 ATYGWKTVDQAETYTK 324
              G K+      Y  
Sbjct: 312 TLLGHKSQRMILRYAH 327


>gi|188496064|ref|ZP_03003334.1| integrase [Escherichia coli 53638]
 gi|188491263|gb|EDU66366.1| integrase [Escherichia coli 53638]
          Length = 357

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 62/341 (18%), Positives = 113/341 (33%), Gaps = 23/341 (6%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHE---STFIPAYMSALTGSTPKREYINS 63
           LPP +     R+     Y     G+   L        S  I A +  L+ +  +      
Sbjct: 12  LPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAVSEAIQANIELLSENRRESLIDRI 68

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
                 TL   +  Y        +   + + + S    I RK  D     I+TK + + +
Sbjct: 69  KGADAITLHAWLDRYETILSERGIRPKTLLDYASKIRAIRRKLPDKPLNDISTKEVAAML 128

Query: 124 ESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
            +   +   +SA    +++  +F+ A+ + +VA NP  +    K +    R    E ++ 
Sbjct: 129 NTYVAEGKAASAKLIRSTLVDVFREAIAEGHVATNPVTATRTAKSEVRRSRLTANEYIEI 188

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241
           + +        RLA +  + +G R  D CR     + +N   I+  KTG  I + L    
Sbjct: 189 YHAAEPLPIWLRLAMDLAVITGQRVGDLCRMKWSDINDNHLHIEQGKTGAKIAIPLTLTI 248

Query: 242 MKL---------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NKSAH 287
             L               G ET   +   + ++    S +F      +G+       + H
Sbjct: 249 DALNISLVDTLQKCREASGSETVIASTHHEPLSPKTVSKYFTKARNASGLSFDGDPPTFH 308

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
            +R   +                 G K+   A  Y     R
Sbjct: 309 ELR-SLSARLYRNQIGDKFAQRLLGHKSDSMAARYRDSRGR 348


>gi|254454844|ref|ZP_05068281.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198269250|gb|EDY93520.1| phage integrase [Octadecabacter antarcticus 238]
          Length = 395

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 62/341 (18%), Positives = 119/341 (34%), Gaps = 24/341 (7%)

Query: 25  FRKGH-GRRIRLPYPHESTFIPAYMSA------LTGSTPKREYINSPRKKPTTLKWLISE 77
           +RKG   RRI L      T   A + A      +       E I   RK P T+  L   
Sbjct: 45  YRKGGRTRRISLGRHGTLTVEQARLLAKEVLGDVAKGENPAEDIAQHRKAP-TVAALCER 103

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRSGVESRKHTPSSAIQF 136
           + ++        +++  +    D  I    G F    +  K +       +  P  A + 
Sbjct: 104 FFQAHVMERCKPSTQGEYRRAIDMFINPALGSFKLVDLERKDVAELHHKFRDKPYQANRT 163

Query: 137 LTSMRVLFKWAVRQEYVAI--NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG----- 189
           L  +  +F  A          NPC  V +  R+ +  R  ++ ++Q+  +  ++      
Sbjct: 164 LGVLSKMFNLAEIWGLRPDGSNPCRHVPK-YREHKRERYLSQVELQRLGNVLADAELNGT 222

Query: 190 --SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
                  AF  L+ +G R  +        + +    +   KTG    + LP     +L+ 
Sbjct: 223 ETPHIIAAFRLLILTGCRLGEIQTLQWGFITDQGMELPDTKTGAR-RIPLPSAARAVLST 281

Query: 248 TP-IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAH 305
              +    + I       +AT F   ++    +AG+     H +R   A+ +  +G    
Sbjct: 282 LARVDGNPYVIVGKVAGKHATDFQHPWRRIRERAGLTGVRIHDLRHTYASNAVSSGMPIQ 341

Query: 306 ELMATYGWKTVDQAETYTKGAD--RIRLGIKNSRRISSVVD 344
            +    G   +     Y   AD    +   +N+ R++++V 
Sbjct: 342 MVGRLLGHTQIQTTMRYAHLADDPVKKAAEENAERLNALVG 382


>gi|114320644|ref|YP_742327.1| tyrosine recombinase XerD [Alkalilimnicola ehrlichii MLHE-1]
 gi|114227038|gb|ABI56837.1| tyrosine recombinase XerD [Alkalilimnicola ehrlichii MLHE-1]
          Length = 304

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 51/275 (18%), Positives = 97/275 (35%), Gaps = 23/275 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESRKHTPSSAIQFLTS 139
             L   +  ++ S      R  G      ++ +         G   +   P S  + LTS
Sbjct: 26  QGLGERTLSAYRSDLLGFQRWLGGQGGSLLSARRDQVLAYLGGRLGQGAKPRSVARLLTS 85

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195
           +R  +++ +R+  VA +P   VE P+         ++ ++++  +        G + R  
Sbjct: 86  LRRFYRYQLREGRVAEDPTRDVESPRLGRPLPGGLSESEVERLLAAPDPETPLGQRDRCM 145

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGK-- 252
            E L  SGLR S+     +  L  +   ++   K G    V L +  ++ +         
Sbjct: 146 LEVLYASGLRVSELVGLSLSELSLSQGLVRVVGKGGRERLVPLGETALEQVQQWLREGRP 205

Query: 253 --------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302
                   +  F+    + +    F    K  A   G+ +  S H +R   AT   + GA
Sbjct: 206 ALLGRRVSDAVFVTGRGEGLTRQAFWYRVKKHARSVGITRPISPHTLRHAFATHLLNHGA 265

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
               +    G   +   + YT  A R RL   ++ 
Sbjct: 266 DLRVVQLLLGHSDLSTTQIYTHVA-RQRLQTLHAE 299


>gi|114771054|ref|ZP_01448494.1| tyrosine recombinase XerD [alpha proteobacterium HTCC2255]
 gi|114548336|gb|EAU51222.1| tyrosine recombinase XerD [alpha proteobacterium HTCC2255]
          Length = 308

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 45/287 (15%), Positives = 100/287 (34%), Gaps = 33/287 (11%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESRK 127
           LI  + ++ H   + + N+ ++++   +   R                       +++  
Sbjct: 7   LIDNFLETIHAERNASKNTLLAYKRDLEAFTRFLSKKRIDLYKANRKDIENYIISLDNHG 66

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK-SFW 186
            + S+  + L++++ ++++   +  +  NP   ++ PK K +     ++ ++ +   +  
Sbjct: 67  MSESTRARHLSTIKQIYRYGYDESLIKDNPSNEIKGPKSKRKLPNYLSENEINKLLDTST 126

Query: 187 SEGSQPR------LAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPD 239
             G  PR           L  +G+R S+     V  ++ N    +   K G    V L  
Sbjct: 127 QIGRSPRDKKRNTCLMHVLYATGMRVSELVSLPVISVRGNPEMLLIKGKGGKERLVPLST 186

Query: 240 GFMKLLAMTPIG---------------KETFFINNDK-QKMNATQFSIWFKAKATKAGV- 282
                +A   +                 +  F ++ K   +   +F ++ K    KAG+ 
Sbjct: 187 PAKMAIAAYLVDWNSQQEINKKKGLQESKFLFPSHSKLGHITRVRFYVFIKELCIKAGIS 246

Query: 283 --NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
               S H +R   A+     GA    +    G   V   E YT   D
Sbjct: 247 PNKVSPHTLRHAFASHLLANGADLRVIQMLLGHADVATTEIYTHVLD 293


>gi|145219991|ref|YP_001130700.1| tyrosine recombinase XerD [Prosthecochloris vibrioformis DSM 265]
 gi|145206155|gb|ABP37198.1| tyrosine recombinase XerD [Chlorobium phaeovibrioides DSM 265]
          Length = 306

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 45/265 (16%), Positives = 92/265 (34%), Gaps = 25/265 (9%)

Query: 85  GSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVESRKHT---PSSAIQFLTS 139
            + + N+R S+ +   + ++  + G      I    I   ++    T    SS  + +++
Sbjct: 25  RNFSPNTRDSYRNDLQRYLQAMQEGCGSLEAINPDSINRFLDELHKTGLEASSIARNVSA 84

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-------WSEGSQP 192
           +R L ++ +    +  NP  ++ +PK         T ++  +                + 
Sbjct: 85  IRSLHRFLINDRVLESNPAENLHQPKLPKYLPSVLTLDETMRILQAPAQKVPPEKLYLRD 144

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLA----- 246
           +   E L  +G+R S+      Q+L      I+   K      V +    +  L      
Sbjct: 145 QAILELLYATGMRVSELVNLKQQNLYLPEQFIRVFGKGSKERLVPVGSSAVNSLTLYRQK 204

Query: 247 -----MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
                     ++  F+N   +KM+        K  A  AG+ K  S H  R   AT   +
Sbjct: 205 LRIQLAGAQSEDCLFLNARGKKMSRMAVFTIVKEYAMLAGIPKTVSPHTFRHTFATHLLE 264

Query: 300 AGATAHELMATYGWKTVDQAETYTK 324
            GA    +    G  ++   + Y+ 
Sbjct: 265 GGADLRAVQEMLGHSSIVATQIYSH 289


>gi|170769153|ref|ZP_02903606.1| integrase protein [Escherichia albertii TW07627]
 gi|170121805|gb|EDS90736.1| integrase protein [Escherichia albertii TW07627]
          Length = 339

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 60/335 (17%), Positives = 104/335 (31%), Gaps = 39/335 (11%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGR-----RIRLPYPHESTFIPAYMSALTGSTPKREYI 61
           LPP V            Y  K  G        R+     +     Y           E  
Sbjct: 13  LPPRVRS------NGYSYVWKPEGSTRTIGLGRVRETSVAKVWQNY-----------ELE 55

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121
            +      T+  L   +  S  +  LA  ++  +  +   ++   G      +  + +R 
Sbjct: 56  KAKLHNIMTVAKLWHMFMDSPAFTELAPRTQKDYRQHQRALLAVFGKVLADNVKIEQVRI 115

Query: 122 GVESRK-HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
            ++ R   + + A   L S+  ++ W   + YV  NPC  V +   K   +   T E   
Sbjct: 116 FMDKRGLESKTQANHELASLSRVYGWGYERGYVKNNPCKGVRKFTLKARTVYI-TDEQYA 174

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
              +      Q R+A E       R  D      Q + +    I+  KTGT    E    
Sbjct: 175 AIYA--EAIPQLRIAMEISYLCAARLGDVLELKWQDIMDKGIYIEQNKTGTKQIKEWSPR 232

Query: 241 FMKLLAMT----PIGKETFFINNDKQKMNATQFSIWF----KAKATKAGVN--KSAHGVR 290
               + +         E         K+ A   + W+    +A   KAGV    + H + 
Sbjct: 233 LRTAIQLARNVSSGTCEYVISTTKGGKVIAKTLNNWWNQAKRAAEQKAGVPFGCNFHDI- 291

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           K       +   ++ +     G KT +Q   Y + 
Sbjct: 292 KAKGISDYE--GSSRDKQIFSGHKTENQVLIYDRK 324


>gi|218442353|ref|YP_002380677.1| integrase family protein [Cyanothece sp. PCC 7424]
 gi|218175457|gb|ACK74184.1| integrase family protein [Cyanothece sp. PCC 7424]
          Length = 273

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 49/242 (20%), Positives = 96/242 (39%), Gaps = 8/242 (3%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFK 145
           +  + IS++ +  Q +   G    R +T   +   V     T  P +    + +++ LF 
Sbjct: 22  SKTTIISYQCHIKQFLEFVG-KPLRDVTLDDLSLWVNRLNLTYQPVTVANKILTVKSLFS 80

Query: 146 WAVRQEYVAINPCLSVERPKRK-TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGL 204
           +A R  Y+ +N    ++ PK K T   R   K ++++  +      +  +    +   GL
Sbjct: 81  FACRVGYLTVNVGSFIKSPKLKDTLAERILEKAEVKRLINATP-NERDSVLLSLMYGCGL 139

Query: 205 RCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM 264
           R S+ C      L+N   ++  +   T + + +P      L   P   E  F++    ++
Sbjct: 140 RVSEVCGLNWSDLRNGKATVFGKGAKTRVVI-IPPNLWDRLMQLPRDGEAVFMSRRGNRL 198

Query: 265 NATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
             T      K    K+GV    S+H +R   A+ + +AG     L  + G   ++  E Y
Sbjct: 199 ERTYIHKMIKECCHKSGVSEKASSHWLRHSHASHAVEAGCNLRLLQQSLGHSKLETTEKY 258

Query: 323 TK 324
             
Sbjct: 259 LH 260


>gi|264677254|ref|YP_003277160.1| tyrosine recombinase XerD [Comamonas testosteroni CNB-2]
 gi|262207766|gb|ACY31864.1| tyrosine recombinase XerD [Comamonas testosteroni CNB-2]
          Length = 318

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 58/312 (18%), Positives = 106/312 (33%), Gaps = 28/312 (8%)

Query: 49  SALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF----DQIIR 104
            A     P       P+ +   L   I           L+ N+  ++          + R
Sbjct: 7   KARESQIPDDWPPPLPQSQ-HALDQFIDALLLED---GLSRNTLSAYRRDLTATARWLAR 62

Query: 105 KSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162
                         ++    +R      +S+ + LT +R  F WA+R++ +A +P + + 
Sbjct: 63  LQPPKALDAALEGDLQGYFTARVEGTKATSSNRRLTVLRRYFHWALREKRIAADPTVRML 122

Query: 163 RPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCR--AGVQH 216
             K+     +  T+E ++            G + R   E +  SGLR S+          
Sbjct: 123 AAKQPPRMPKTLTQEQVEALLDAPDVDSPLGLRDRAMLELMYASGLRVSELVGVCMHELD 182

Query: 217 LQNNIFSIKTQKTGTIITVE-------LPDGFMKLLAMTPIGKET--FFINNDKQKMNAT 267
           L++ +  +  +     +          L     +  A+   G++T   F+      M+  
Sbjct: 183 LRSGVLRVTGKGRKERLVPFGQEAQHWLERYLQQARAVILGGQQTEEVFVTQRGAGMSRV 242

Query: 268 QFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
            F +  K  A  AGVN   S H +R   AT   + GA    +    G   +     YT  
Sbjct: 243 MFWVIVKKCAQIAGVNSPLSPHTLRHAFATHLLNHGADLRVVQMLLGHADISTTTIYTHV 302

Query: 326 ADRIRLGIKNSR 337
           A R RL   ++ 
Sbjct: 303 A-RERLKALHAE 313


>gi|193215186|ref|YP_001996385.1| tyrosine recombinase XerD [Chloroherpeton thalassium ATCC 35110]
 gi|193088663|gb|ACF13938.1| tyrosine recombinase XerD [Chloroherpeton thalassium ATCC 35110]
          Length = 305

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 49/271 (18%), Positives = 102/271 (37%), Gaps = 27/271 (9%)

Query: 85  GSLAVNSRISFE----SYFDQIIRKSGDFD-YRKITTKHIRSGVESRKHTPSSAIQFLTS 139
            +L+ N++ S+      Y   +     + D  R    +   + +       SS  + +++
Sbjct: 23  RNLSENTKASYAHDLTRYLLYVQDSHENLDEVRAEDVRKFITELHDLGLEASSISRNISA 82

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS--FWSEGSQPRLA-- 195
           +R L K+   ++ +  N    V  PK          ++++ +        E  +P+LA  
Sbjct: 83  IRSLHKFLSAEKKIRKNVAEEVILPKLGKYLPTVLNQQEVDKLLEMPLHPENPKPKLAIR 142

Query: 196 ----FEFLLYSGLRCSDSCRAGVQH-LQNNIFSIKTQKTGTIITVELP-------DGFMK 243
                EFL  +G+R S+      Q+   ++ F+    K      V +        + + K
Sbjct: 143 DKAILEFLYATGVRVSELVELKQQNLFFDSGFARIFGKGAKERLVPVGSSAIHAVETYQK 202

Query: 244 LLAMTPIGKET---FFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISA 298
            + +  + + +    F+N   +K+         +  A +AG+ KS   H +R   AT   
Sbjct: 203 TIRIKLVNRASADFLFLNARGKKLTRMSIYNIVQEYAQQAGIEKSISPHTLRHSFATHLL 262

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRI 329
           + GA    +    G  ++   + YT   DR 
Sbjct: 263 EGGADLRSVQEMLGHSSIKATQIYTH-VDRA 292


>gi|325919208|ref|ZP_08181257.1| tyrosine recombinase XerD subunit [Xanthomonas gardneri ATCC 19865]
 gi|325550308|gb|EGD21113.1| tyrosine recombinase XerD subunit [Xanthomonas gardneri ATCC 19865]
          Length = 323

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 45/272 (16%), Positives = 95/272 (34%), Gaps = 29/272 (10%)

Query: 86  SLAVNSRISFESYFDQIIR-----KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSM 140
            +A  +  S+    + + R       G     +             +++P S  + L+++
Sbjct: 39  GVARQTLDSYRRDLEGLARWRDGAGGGLLGVDRAAVFDYLRWRSEARYSPRSTARLLSTL 98

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLAF 196
           R  +   +R+   + +P   ++ P       +  T+  ++   +        G + R   
Sbjct: 99  RAFYGLCLREGLRSDDPTALIDPPHLPRSLPKALTESQIEALLAAPDIDSPLGLRDRAML 158

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-------------ELPDGFMK 243
           E +  +GLR S+        +      ++    G+   +              L +    
Sbjct: 159 ELMYAAGLRVSELVNLPAVGVNLRQGVLRVTGKGSKDRLVPLGEESQHWLERYLHEARPL 218

Query: 244 LLAMTPI----GKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATI 296
           L +  P+    G+   F++  +Q  +  QF    K  A  AG++    S HG+R   AT 
Sbjct: 219 LASHKPVASVDGQVPLFVDAARQPPSRQQFWALVKRYAAVAGIDPDTVSPHGLRHSFATH 278

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADR 328
             + GA    L    G  ++   + YT  A +
Sbjct: 279 LLNHGADLRALQMLLGHSSLSTTQIYTLVARQ 310


>gi|237746874|ref|ZP_04577354.1| tyrosine recombinase XerD [Oxalobacter formigenes HOxBLS]
 gi|229378225|gb|EEO28316.1| tyrosine recombinase XerD [Oxalobacter formigenes HOxBLS]
          Length = 303

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 43/267 (16%), Positives = 93/267 (34%), Gaps = 23/267 (8%)

Query: 86  SLAVNSRISFESYFD----QIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTS 139
            L+ N+  ++          + +        ++T   + S   +R  +   +SA + LT 
Sbjct: 15  GLSQNTLDAYRRDMQLFAQWLEKNGPGTRLLEVTPDILNSYFLARHSESKATSANRRLTV 74

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ----QFKSFWSEGSQPRLA 195
           ++  ++   R   +A+NPC  +   K+        ++  ++      +     G + R  
Sbjct: 75  LKRFYRLQFRLGRLAVNPCQKMHAAKQPARFPGTLSETQVESLLIAPRVENPLGLRDRTM 134

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---------IITVELPDGFMKLLA 246
            E +  SGLR S+     +  +  N   ++    G+            + +     +   
Sbjct: 135 IELMYASGLRVSELVTLKLVEVGMNEGVLRILGKGSKTRLVPFGEEARIWIERYMRESRP 194

Query: 247 MTPIGK--ETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGA 302
               GK  +  F+      M    F    +  A ++G++   S H +R   AT   + GA
Sbjct: 195 FILAGKVSDYLFVTARGTSMTRQMFWTLIRKYALQSGIHEPLSPHTLRHAFATHLLNHGA 254

Query: 303 TAHELMATYGWKTVDQAETYTKGADRI 329
               +    G   +   + YT  A + 
Sbjct: 255 DLRVVQLLLGHADISTTQIYTHVAQQR 281


>gi|255532069|ref|YP_003092441.1| tyrosine recombinase XerD [Pedobacter heparinus DSM 2366]
 gi|255345053|gb|ACU04379.1| tyrosine recombinase XerD [Pedobacter heparinus DSM 2366]
          Length = 299

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 48/265 (18%), Positives = 94/265 (35%), Gaps = 25/265 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFD-------YRKITTKHIRSGVESRKHTPSSAIQFL 137
            SL+ NS  ++    +++ +     D             KH  S +      PS+  + +
Sbjct: 18  RSLSGNSIEAYLGDLNKLSQYFESVDQTPQVKEITGDDLKHFVSWINELGMLPSTQARVV 77

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ----QFKSFWSEGSQPR 193
           + ++  F + + +E +  +P   +E P++        + +++        +   EG + +
Sbjct: 78  SGLKAFFSFLMLEEIITTDPSALLESPRQVKHLPDTLSIQEINGMIGAIDASKPEGMRNK 137

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG--------FMKL 244
              E L   GLR S+     +  +      I+   K      V +             + 
Sbjct: 138 AILETLYGCGLRVSELSNLKISDVFEENEFIRIFGKGNKERLVPIGQTALKYINIYLRES 197

Query: 245 LAMTPIGK---ETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISAD 299
               PI K   +  F+N    +++        KA A K+G+ KS   H  R   AT   +
Sbjct: 198 RVHVPIKKGHEDYIFLNRSGTRLSRISVFSIIKALALKSGIKKSISPHTFRHSFATHLIE 257

Query: 300 AGATAHELMATYGWKTVDQAETYTK 324
            GA    +    G  ++   E YT 
Sbjct: 258 GGADLRAVQEMLGHSSITTTEIYTH 282


>gi|311278186|ref|YP_003940417.1| tyrosine recombinase XerD [Enterobacter cloacae SCF1]
 gi|308747381|gb|ADO47133.1| tyrosine recombinase XerD [Enterobacter cloacae SCF1]
          Length = 298

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 45/270 (16%), Positives = 92/270 (34%), Gaps = 24/270 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTK-----HIRSGVESRKHTPSSAIQFLTS 139
            +LA N+  ++      +            T +     ++ +      +  +S+ + L++
Sbjct: 19  KNLAENTLSAYRRDLTMVAAWLQHRGLSLETAQPGDLQNLLAERVDGGYKATSSARLLSA 78

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195
           MR LF+   R++    +P   +  PK      +  ++  + +             + +  
Sbjct: 79  MRRLFQHLYREKIRPDDPSAQLASPKLPQRLPKDLSEAQVDRLLQAPLVDQPLELRDKAM 138

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKET 254
            E L  +GLR S+     +  +      ++   K      V L +  +  L         
Sbjct: 139 LEVLYATGLRVSELVGLSMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLENYLEHGRP 198

Query: 255 FFIN----------NDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG 301
           + +N             Q+M    F    K  A  AG++    S H +R   AT   + G
Sbjct: 199 WLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYARLAGIDSEKLSPHVLRHAFATHLLNHG 258

Query: 302 ATAHELMATYGWKTVDQAETYTKGA-DRIR 330
           A    +    G   +   + YT  A +R+R
Sbjct: 259 ADLRVVQMLLGHSDLSTTQIYTHVATERLR 288


>gi|284044544|ref|YP_003394884.1| tyrosine recombinase XerD [Conexibacter woesei DSM 14684]
 gi|283948765|gb|ADB51509.1| tyrosine recombinase XerD [Conexibacter woesei DSM 14684]
          Length = 320

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 45/295 (15%), Positives = 96/295 (32%), Gaps = 33/295 (11%)

Query: 67  KPTTLKWLISEYRKSAHW-GSLAVNSRISFESYF------------DQIIRKSGDFDYRK 113
           +  + + L+ ++         L+ N+  ++ S              D +  + GD     
Sbjct: 11  RTGSFEDLVLDFIAYLELERGLSRNTLEAYRSDLLQYGAYLDRAGKDALRVEHGD--LAA 68

Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
                   G        ++  + +  +R  ++   R+E +  +P   ++ P R  +  + 
Sbjct: 69  FVGALAAGGDGRAPAAATTVQRKVACLRSFYRHLRREEILDRDPTAELKGPPRGKKLPKV 128

Query: 174 WTKEDMQ----QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQK 228
            +++++Q    Q +       + R   E +   GLR S++    +  L  ++       K
Sbjct: 129 LSRDEVQHLLSQPRGTGPAALRDRALLELMYACGLRASEAVDMQLDELDVDDGILRANGK 188

Query: 229 TGTIITVEL----PDGFMKLLAMTP------IGKETFFINNDKQKMNATQFSIWFKAKAT 278
                 V +     D     L            ++  F+N     +         +  A 
Sbjct: 189 GNKERLVPIGSKALDALRHYLTRGRPQMVGLREEKRVFVNQRGHGLTRQGLYKIVQRHAR 248

Query: 279 KAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330
            AG+    S H +R   AT     G     L    G   +   + YT   A+R+R
Sbjct: 249 TAGLGDKMSPHTLRHTFATHLLAGGCDLRSLQEMLGHADIATTQIYTHLSAERLR 303


>gi|56414990|ref|YP_152065.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197363919|ref|YP_002143556.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|56129247|gb|AAV78753.1| site-specific integrase/recombinase [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197095396|emb|CAR60955.1| site-specific integrase/recombinase [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
          Length = 298

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 43/265 (16%), Positives = 89/265 (33%), Gaps = 23/265 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESR---KHTPSSAIQFLTS 139
             LA N+  ++      ++                 +++ +  R    +  +S+ + L++
Sbjct: 19  RDLAENTLSAYRRDLSMVVAWLHHRGKTLATAQADDLQTLLAERVEGGYKATSSARLLSA 78

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195
           MR  F+   R++Y   +P   +  PK      +  ++  +++             + +  
Sbjct: 79  MRRFFQHLYREKYREDDPSAQLASPKLPQRLPKDLSEVQVERLLQAPLIDQPLELRDKAM 138

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKET 254
            E L  +GLR S+     +  +      ++   K      V L +  +  L         
Sbjct: 139 LEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRP 198

Query: 255 FFIN----------NDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG 301
           + +N             Q+M    F    K  A  AG++    S H +R   AT   + G
Sbjct: 199 WLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHG 258

Query: 302 ATAHELMATYGWKTVDQAETYTKGA 326
           A    +    G   +   + YT  A
Sbjct: 259 ADLRVVQMLLGHSDLSTTQIYTHVA 283


>gi|224824183|ref|ZP_03697291.1| tyrosine recombinase XerC [Lutiella nitroferrum 2002]
 gi|224603602|gb|EEG09777.1| tyrosine recombinase XerC [Lutiella nitroferrum 2002]
          Length = 323

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 48/292 (16%), Positives = 100/292 (34%), Gaps = 19/292 (6%)

Query: 51  LTGSTPKREYINSPRKKPTTLKW--LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD 108
           ++ S       +  +  P++  W   I+ Y +S      + ++R ++      +    G 
Sbjct: 1   MSTSPQDVPDPSPEQSVPSSTSWEQRIAGYDQSLQLAGKSPHTRSAYRRDLQALAALQGA 60

Query: 109 FDYRKITTKHIR---SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165
            D   +T + IR   + + ++ H   S  + L++ R  F W + QE +  NPC  +  PK
Sbjct: 61  QDPATLTAQQIRLAVARLHAKGHIGRSLARMLSAWRGFFDWLIEQEKLPANPCHGIRPPK 120

Query: 166 RKTEGIRPWTKEDMQQFKSF-----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220
                 +    +                  + +  FE L   GLR S+     +  L   
Sbjct: 121 SPKTLPKALPVDATSALLDAPIDPEDDLALRDQAMFELLYSCGLRLSELTGLDLADLDLG 180

Query: 221 IFSIKTQKTGTIITV-----ELPDGFMKLLAMTP--IGKETFFINNDKQKMNATQFSIWF 273
              +     G    +     +      + LA+ P   G+   F     ++++  Q     
Sbjct: 181 EGLLTAHGKGNKTRILPIGRQARQALERWLAIRPSQPGEGAVFTGKSGRRLSGRQVEKRL 240

Query: 274 KAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           +  A + G ++    H +R   A+    +      +    G   +   + YT
Sbjct: 241 EQWAQRHGSDRHVHPHMLRHSFASHLLQSSGDLRAVQELLGHANLSTTQIYT 292


>gi|33151294|ref|NP_872647.1| site-specific tyrosine recombinase XerD [Haemophilus ducreyi
           35000HP]
 gi|71153413|sp|Q7VPN8|XERD_HAEDU RecName: Full=Tyrosine recombinase xerD
 gi|33147514|gb|AAP95036.1| integrase/recombinase XerD [Haemophilus ducreyi 35000HP]
          Length = 297

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/280 (14%), Positives = 102/280 (36%), Gaps = 25/280 (8%)

Query: 71  LKWLISEYRKSAHW--GSLAVNSRISFESYFD----QIIRKSGDFDYRKITTKHIRSGVE 124
           L  +I ++  +  W   SL+ N+ +S+    +     ++             +       
Sbjct: 4   LDPIIEQFLDTL-WLEQSLSHNTLLSYRLDLELFSAWLVEPRAFLTLTHTDLQLFLGDRL 62

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----Q 180
            + +  SS+ + ++ +R  F++   ++Y   +P   +  P+++ +  +  ++E +     
Sbjct: 63  DKGYKSSSSARIISCLRKFFRFLCLEKYRLDDPTSMLISPRKRVQLPKSLSEEQVMDLLD 122

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPD 239
                     + +   E L  +GLR ++     + +L      ++   K      V + +
Sbjct: 123 APNPLDPIELRDKAMLELLYATGLRVTELISLTIDNLNLRQGVVRVIGKGDKERLVPIGE 182

Query: 240 G----------FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SA 286
                      + +++ ++    +  F +   ++M    F    K  A  AG++    S 
Sbjct: 183 EASYWIQEFFDYGRMILLSDQQSDVLFPSRRAKQMTRQTFWHRIKYYAILAGIDAEKLSP 242

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           H +R   AT   + GA    +    G   +   + YT  A
Sbjct: 243 HVLRHAFATHLINHGADLRVVQMLLGHSDLSTTQIYTHVA 282


>gi|166713420|ref|ZP_02244627.1| site-specific tyrosine recombinase XerD [Xanthomonas oryzae pv.
           oryzicola BLS256]
          Length = 323

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 46/273 (16%), Positives = 92/273 (33%), Gaps = 29/273 (10%)

Query: 85  GSLAVNSRISFESYFDQIIR-----KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
             +A  +  S+    + + R       G     +              ++P S  + L++
Sbjct: 38  QGVARQTLESYRRDLEGLARWRDGAGGGLLGIDRAALFDYLRWRAQATYSPRSTARLLST 97

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195
           +R  + W +R    + +P   ++ P+      +  T+  ++   +        G + R  
Sbjct: 98  LRAFYGWCLRDGVRSDDPTALIDPPQLPRSLPKALTESQIEALLAAPEVDTPAGLRDRAM 157

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-ITVELPDGFMKLLA-------- 246
            E +  +GLR S+        +      ++    G+    V L +     L         
Sbjct: 158 LELMYAAGLRVSELVNLPAVGVNLRQGVLRVTGKGSKDRLVPLGEESQHWLERYLRQARP 217

Query: 247 --------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSAT 295
                       G+   FI+  +Q ++   F    K  A  AG++    S HG+R   AT
Sbjct: 218 LLAANKPVAAVDGQVPLFIDAARQALSRQHFWALVKRYAAVAGIDPATVSPHGLRHSFAT 277

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADR 328
              + GA    L    G  ++   + YT  A +
Sbjct: 278 HLLNHGADLRALQMLLGHSSLSTTQIYTLVARQ 310


>gi|163857876|ref|YP_001632174.1| site-specific tyrosine recombinase XerD [Bordetella petrii DSM
           12804]
 gi|163261604|emb|CAP43906.1| integrase/recombinase [Bordetella petrii]
          Length = 310

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 50/281 (17%), Positives = 90/281 (32%), Gaps = 30/281 (10%)

Query: 86  SLAVNSRISFESYFDQIIR------KSGDFDYRKITTK----HIRSGVESR--KHTPSSA 133
            LA N+  ++        R      + G      +        I +   +R      ++A
Sbjct: 25  GLAANTLAAYRRDLSAFARWLETPAEHGGAATASLLRDAGTGDIEAWFAARHADSRATTA 84

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----G 189
            + L ++R  + WA+R+     +PCL++   K+     +  ++  +             G
Sbjct: 85  NRRLAALRRFYAWALREHRTGHDPCLTLSAAKQPPRMPKTLSEAQVDALLRAPDLNTARG 144

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT--QKTGTIITVELPDGFMKLLA- 246
            + R   E L  +GLR S+     V  +  N   ++    K G    V L       +  
Sbjct: 145 LRDRAMLETLYATGLRVSELVNIKVLEVSLNEGVVRVVMGKGGKDRLVPLGAEAAHWIDR 204

Query: 247 ---------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSAT 295
                          +  F+    Q M    F    K  A  +GV    S H +R   AT
Sbjct: 205 YLKEARPDLAGARVSDALFLTARAQPMTRQAFWQLIKKYAVVSGVRAPLSPHVLRHAFAT 264

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
              + GA    +    G   +   + YT  A      +  +
Sbjct: 265 HLLNHGADLRVVQMLLGHADISTTQIYTHVARERLKALHAA 305


>gi|323141913|ref|ZP_08076774.1| tyrosine recombinase XerD [Phascolarctobacterium sp. YIT 12067]
 gi|322413660|gb|EFY04518.1| tyrosine recombinase XerD [Phascolarctobacterium sp. YIT 12067]
          Length = 297

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 45/284 (15%), Positives = 105/284 (36%), Gaps = 28/284 (9%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHT 129
            L  EY        LA N+++++      +++      D +  +++ + + + +   K  
Sbjct: 6   ALFQEYLTVE--LGLAKNTQLAYMRDLRLLMKSLQLKADEELLQVSRQQLIAYLVRLKQE 63

Query: 130 PSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             +A    + L S++  +++   + Y+  NP   +E   R     +  + +++++     
Sbjct: 64  GRAASTVARKLASIKAFYRFLTAERYIRRNPAEVLEAASRGLHLPKVLSVQEVERLLDEP 123

Query: 187 SEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV------- 235
           + G+    + +   E L  +G+R S+     V+++   +  +     G+   +       
Sbjct: 124 NLGTLDGYRDKTMLELLYATGMRVSELVNVPVKNVDMKMQYVIVMGKGSKERMLPLGRTA 183

Query: 236 ------ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287
                  L     +LL   P      F+      M   +F     A    AG++K  + H
Sbjct: 184 LHYLEHYLSVVRPQLLHGKPDTAAELFVTGWGGPMTRERFYEIIVAYGKSAGISKRVTPH 243

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330
            +R   AT   + G     +    G   +   + YT    +R+R
Sbjct: 244 MLRHSFATHLLNNGTDLRIVQELLGHADISTTQIYTHLDVERLR 287


>gi|84622421|ref|YP_449793.1| site-specific tyrosine recombinase XerD [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|161899015|ref|YP_199478.2| site-specific tyrosine recombinase XerD [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|84366361|dbj|BAE67519.1| integrase-recombinase XerD [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 323

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 46/273 (16%), Positives = 93/273 (34%), Gaps = 29/273 (10%)

Query: 85  GSLAVNSRISFESYFDQIIR-----KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
             +A  +  S+    + + R       G     ++             ++P S  + L++
Sbjct: 38  QGVARQTLESYRRDLEGLARWRAGAGGGLLGIDRVALFDYLRWRAQANYSPRSTARLLST 97

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195
           +R  + W +R    + +P   ++ P+      +  T+  ++   +        G + R  
Sbjct: 98  LRAFYGWCLRDGVRSDDPTALIDPPQLPRSLPKALTESQIEALLAAPEVDTPAGLRDRAM 157

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-ITVELPDGFMKLLA-------- 246
            E +  +GLR S+        +      ++    G+    V L +     L         
Sbjct: 158 LELMYAAGLRVSELVNLPAVGVNLRQGVLRVTGKGSKDRLVPLGEESQHWLERYLREARP 217

Query: 247 --------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSAT 295
                       G+   FI+  +Q ++   F    K  A  AG++    S HG+R   AT
Sbjct: 218 LLAANKPVAAVDGQVPLFIDAARQALSRQHFWALVKRYAAVAGIDPAMVSPHGLRHSFAT 277

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADR 328
              + GA    L    G  ++   + YT  A +
Sbjct: 278 HLLNHGADLRALQMLLGHSSLSTTQIYTLVARQ 310


>gi|258544388|ref|ZP_05704622.1| tyrosine recombinase XerD [Cardiobacterium hominis ATCC 15826]
 gi|258520347|gb|EEV89206.1| tyrosine recombinase XerD [Cardiobacterium hominis ATCC 15826]
          Length = 289

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 44/268 (16%), Positives = 89/268 (33%), Gaps = 22/268 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI---QFLTSMR 141
             LA  S  S+     ++  +         +   +++ +         A    +   S+R
Sbjct: 14  AGLAEASVASYRRDL-RLAERLCAKPLSDFSAADVQAVLAQLLDLQRKASSLARMRVSLR 72

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFE 197
             F W V +   A +P + +E  + +    R  ++ ++++  +        G +     E
Sbjct: 73  RFFAWMVEERLRADDPTVLLEAVRHEKPLPRSLSEAEVERLLAAPDLATPAGLRDAAMLE 132

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-VELPDGFMKL----------LA 246
            L   GLR S+     +  +      ++ +  G  +  V + +   ++          L 
Sbjct: 133 LLYACGLRVSELVGLPLSAVFLQEAVLRVRGKGDKVRLVPMGEQAAEMVERYCREARPLL 192

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATA 304
           +     +  FI      MN   F       A   G+    S H +R   AT   + GA  
Sbjct: 193 LEGRVSDVLFIAARGGAMNRRTFWKLIHDYAIAVGIRTAVSPHTLRHAFATHLVNHGADL 252

Query: 305 HELMATYGWKTVDQAETYTKGADRIRLG 332
             +    G   +   + YT  A+  RL 
Sbjct: 253 RVVQMLLGHSNLSTTQIYTHVAE-ARLA 279


>gi|108758883|ref|YP_632026.1| tyrosine recombinase XerD [Myxococcus xanthus DK 1622]
 gi|108462763|gb|ABF87948.1| tyrosine recombinase XerD [Myxococcus xanthus DK 1622]
          Length = 310

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 45/270 (16%), Positives = 88/270 (32%), Gaps = 24/270 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS------GVESRKHTPSSAIQFLT 138
             L+  +  ++ +  +             +T             +  R     S  + L 
Sbjct: 16  RGLSGKTVDAYAADINVYFEDLRSRGVSDVTQARQEDVSAHLSALGKRGLGKRSQARHLA 75

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRL 194
           ++R   ++ V +     +P   ++ P+   +     T E+++Q  +   E    G + + 
Sbjct: 76  ALRGFHRFLVAERMADKDPTEDLDTPRSARKLPSFLTLEEVEQLLAAPDERTSTGVRDKA 135

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFMKLLAM------ 247
             E L  +GLR S+ C  G+  +Q     +  +  G     V L    ++ +        
Sbjct: 136 MLEVLYATGLRVSELCGLGINDVQLTAGYLVAKGKGAKERLVPLGSVAIEKVQAYLAESR 195

Query: 248 ----TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAG 301
                    +  F+           F    K  A KAG+    S H +R   AT   + G
Sbjct: 196 PAVLGRRKSQALFVTPRGSGFTRQGFWKLLKRYALKAGILKPLSPHKLRHSFATHLVERG 255

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRL 331
           A    +    G   +   + YT   +  RL
Sbjct: 256 ADLRAVQQMLGHADLATTQIYTH-VNAARL 284


>gi|168703879|ref|ZP_02736156.1| integrase/recombinase [Gemmata obscuriglobus UQM 2246]
          Length = 301

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 54/272 (19%), Positives = 101/272 (37%), Gaps = 27/272 (9%)

Query: 85  GSLAVNSRISFESYFD------QIIRKSGDFDYRKITTKHIRS---GVESRKHTPSSAIQ 135
            + +  +  S+           +   K G       TT+ +RS    +  + +  S+  +
Sbjct: 18  KNSSDKTVKSYREDLTQALGFVRDRTKKGHVAVGDWTTRTVRSFVSWLHEQGYAKSTIAR 77

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQ 191
            L ++R   K+  R   + +NP L++  PK+  +     T  D+Q+  +        G +
Sbjct: 78  RLAAVRSFSKYLCRAGVLDVNPALALRGPKQDKKLPHFLTLADVQKLLTAPPATDWAGRR 137

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMK------ 243
            R   E L  SG+R S+     +    L + + +++ +     + +  PD          
Sbjct: 138 DRAVLETLYASGIRVSELVGLDLLAVDLNDGVITVRGKGKKERLALLGPDAVKAITLWYE 197

Query: 244 ----LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATIS 297
               LLA T    E  F+NN   ++               AG++   S H +R   AT  
Sbjct: 198 DRSALLARTGQETEAVFLNNKGGRLTTRSVGRLLSHHLKVAGLDPRTSPHTLRHSFATHM 257

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            DAGA    +    G K++   + YT    + 
Sbjct: 258 LDAGADIRGVQELLGHKSLATTQVYTHVTTQR 289


>gi|227541999|ref|ZP_03972048.1| site-specific tyrosine recombinase XerD [Corynebacterium
           glucuronolyticum ATCC 51866]
 gi|227182214|gb|EEI63186.1| site-specific tyrosine recombinase XerD [Corynebacterium
           glucuronolyticum ATCC 51866]
          Length = 360

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 45/270 (16%), Positives = 88/270 (32%), Gaps = 24/270 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT---PSSAIQFLTSMR 141
              A N+  S+       +   G+     I    I + ++S        +S  + L+++R
Sbjct: 81  RGKARNTIASYRRDLASYLDFVGERSLDSIAATDIEAFLQSLGRHGLAVTSVRRMLSTIR 140

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLAFE 197
               +A  +  VA +    +  P          + +++       +       + +   E
Sbjct: 141 GFHAFARDEGIVADDVAHDITPPAMPQHLPDTLSVDEINTLIESQAGDSAVALRNKALLE 200

Query: 198 FLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE 253
            L  +G R S+     V  +    + +   + T K      V +     + +    +   
Sbjct: 201 LLYGTGARISEVLSLAVDDITALEETDGILVLTGKGDKQRIVPVGSHARQAVDAYLVRGR 260

Query: 254 ----------TFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301
                      F      + M+        K  AT+AG+ K  S H +R   AT   + G
Sbjct: 261 PQLNKGKSAALFLNVRGGKAMSRQSAWQVVKQAATEAGITKDISPHTLRHSFATHLLEGG 320

Query: 302 ATAHELMATYGWKTVDQAETYTK-GADRIR 330
           A    +    G  +V   + YT   AD +R
Sbjct: 321 ADVRSVQELLGHASVTTTQIYTHITADSLR 350


>gi|19552635|ref|NP_600637.1| site-specific tyrosine recombinase XerD [Corynebacterium glutamicum
           ATCC 13032]
 gi|62390303|ref|YP_225705.1| site-specific tyrosine recombinase XerD [Corynebacterium glutamicum
           ATCC 13032]
 gi|34222909|sp|Q8NQL5|XERD_CORGL RecName: Full=Tyrosine recombinase xerD
 gi|21324187|dbj|BAB98812.1| Integrase [Corynebacterium glutamicum ATCC 13032]
 gi|41325640|emb|CAF21429.1| INTEGRASE/RECOMBINASE XERD [Corynebacterium glutamicum ATCC 13032]
          Length = 304

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 53/277 (19%), Positives = 97/277 (35%), Gaps = 31/277 (11%)

Query: 85  GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGVESRKH--------TPSSA 133
             L+ N+  ++    ++       +G  D R ITT H+ S V+  +         + SSA
Sbjct: 18  RGLSANTLSNYRRDVERYCDWLEAAGLDDIRDITTAHVESYVKDLRRGIDGQQALSASSA 77

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----- 188
            + L   R L K+A+ +  VA +    V  P          +  ++              
Sbjct: 78  GRALIVARGLHKFALMEGEVAADVAADVSPPAMGRHLPDTLSINEVALLIDAIPHSDIAT 137

Query: 189 --GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------EL 237
               + R   E L  +G R S++    V  +      ++    G+   +          +
Sbjct: 138 PVDLRDRALVELLYGTGARISEAIGLAVDDVSEMPEVLRITGKGSKQRIVPFGSMAQQAV 197

Query: 238 PDGFMKLLAMTPIGKET-FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSA 294
            +  ++       GK    F+N     ++        K    +AG++K  S H +R   A
Sbjct: 198 REYLVRARPALSKGKSHALFLNQRGGPLSRQSAWAVLKKTVERAGLDKDISPHTLRHSFA 257

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330
           T   + GA    +    G  +V   + YT   AD +R
Sbjct: 258 THLLEGGADVRVVQELLGHSSVTTTQIYTHITADSLR 294


>gi|89072532|ref|ZP_01159104.1| tyrosine recombinase [Photobacterium sp. SKA34]
 gi|89051636|gb|EAR57089.1| tyrosine recombinase [Photobacterium sp. SKA34]
          Length = 298

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 37/265 (13%), Positives = 92/265 (34%), Gaps = 23/265 (8%)

Query: 85  GSLAVNSRISFESYFDQII-----RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
             L+ N+  S+ +   +++                  +  +  +  + +  +S  + +++
Sbjct: 19  RGLSENTLSSYRNDLTKLLRWLKQESRNVISVSVDDLQRYQQWLFDKDYKQTSRARMVSA 78

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195
           +R LF++  R++    +P + +  PK      +  ++  +               + +  
Sbjct: 79  IRRLFQYLHREKMRDDDPSVMLVTPKLPKRLPKDLSEAQVDALLEAPDVNDPIELRDKAM 138

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAMTP----- 249
            E L  +GLR ++     ++++      ++ T K      V + +  +  +         
Sbjct: 139 LELLYATGLRVTELVTLTMENISLRQGVVRITGKGDKERLVPMGENAVDWIEQFIETGRP 198

Query: 250 -----IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATISADAG 301
                   +  F +   ++M    F    K  A  AG++    S H +R   AT   + G
Sbjct: 199 QLLGEKSSDVLFPSRRARQMTRQTFWHRIKHYAVLAGIDADTLSPHVMRHAFATHLLNYG 258

Query: 302 ATAHELMATYGWKTVDQAETYTKGA 326
           A    +    G   +   + YT  A
Sbjct: 259 ADLRVVQMLLGHSDLSTTQIYTHVA 283


>gi|319654625|ref|ZP_08008706.1| hypothetical protein HMPREF1013_05328 [Bacillus sp. 2_A_57_CT2]
 gi|317393691|gb|EFV74448.1| hypothetical protein HMPREF1013_05328 [Bacillus sp. 2_A_57_CT2]
          Length = 328

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 49/266 (18%), Positives = 99/266 (37%), Gaps = 12/266 (4%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSSA 133
           I  +  +     L+  +  S+    +   +K        ITT  IR  + S +H   SS 
Sbjct: 55  IQLFLSAKKLEGLSKVTLDSYLLELNTFSKKV-KKRVEDITTAEIRVFLGSFEHLKLSSV 113

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
            + L+ ++  F W   +E++  +P   ++ PK++    +  + E+++  +       + R
Sbjct: 114 SRKLSVLKSFFGWLTAEEFLQRDPTTKIKPPKKEKRLPKALSIEELELLRESCKTN-RQR 172

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG----FMKLLAMT 248
              E L  +G R S+        + N   S +   K      V           K L   
Sbjct: 173 AFLEILYATGCRLSEVHALNKSGINNRTASCRVIGKGNKEREVYFSPKAMYHLRKYLMNR 232

Query: 249 PIGKETFFINNDK--QKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATA 304
               E   +   K  ++++           A +AG++K  S H +R   AT++ + GA  
Sbjct: 233 TDDCEALMVTERKPYRRLSQRGIQREISIIAKQAGLDKKISPHTMRHTFATLTLNNGADI 292

Query: 305 HELMATYGWKTVDQAETYTKGADRIR 330
             + A  G +     + Y +  +  +
Sbjct: 293 AAVQALLGHEDPATTQIYAQLTEEKK 318


>gi|163788788|ref|ZP_02183233.1| 3-dehydroquinate dehydratase [Flavobacteriales bacterium ALC-1]
 gi|159876025|gb|EDP70084.1| 3-dehydroquinate dehydratase [Flavobacteriales bacterium ALC-1]
          Length = 302

 Score =  134 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 54/293 (18%), Positives = 97/293 (33%), Gaps = 32/293 (10%)

Query: 71  LKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGV---- 123
            +  I++YR        L+ NS  ++     ++I    +       ITT +         
Sbjct: 3   WQQAITDYRHYLQIERGLSKNSIENYCYDIKKLIVYLEENALIVSPITTDNAIVKQFIYT 62

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
            S+     S  + ++ +R  F + + + Y   NP   +E P+   +     + +D+    
Sbjct: 63  ISKSLNARSQARLISGLRNFFDYLIFENYRETNPLDLIESPRIGRKLPDTLSIDDIDNLV 122

Query: 184 SFWSE---------GSQPRLAFEFLLYSGLRCSDSCRAGVQH--LQNNIFSIKTQKTGTI 232
           +             G + R   E L   GLR S+     +           + T K    
Sbjct: 123 NNIDLSYQYNGVNLGERNRAIIETLYSCGLRVSELIELKISDLFFDEGFIKV-TGKGDKQ 181

Query: 233 ITVELP----------DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
             V +            G    + + P  K+  F+N   +K+         K    K+G+
Sbjct: 182 RFVPIGLTTQNYIAIWIGIRNHIEVQPNSKDNLFLNYKGKKLTRAMIFTIIKKLVEKSGI 241

Query: 283 NK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
            K  S H  R   AT   + GA    +    G +++   E Y    DR  L  
Sbjct: 242 TKNVSPHTFRHSFATHLLENGADLRAIQMMLGHESITTTEIYMH-VDRSHLSD 293


>gi|227504282|ref|ZP_03934331.1| site-specific tyrosine recombinase XerD [Corynebacterium striatum
           ATCC 6940]
 gi|227199121|gb|EEI79169.1| site-specific tyrosine recombinase XerD [Corynebacterium striatum
           ATCC 6940]
          Length = 298

 Score =  134 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 48/263 (18%), Positives = 89/263 (33%), Gaps = 23/263 (8%)

Query: 90  NSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSM--RVLFKWA 147
           N R     Y   +    G  D   +    +   ++  +   ++A      +  R L K+ 
Sbjct: 27  NYRRDVRRYLGWLADN-GIDDLADVDRGMVEEYLKFLRGGLAAASASRALIVARGLHKFG 85

Query: 148 VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS-------QPRLAFEFLL 200
           V +  + ++    V  PK           +++++      +G        + R   E L 
Sbjct: 86  VAEGVLDVDVAGEVAPPKNAAHLPETLRVDEVEKLIDSVPDGETATPIDIRDRALLEMLY 145

Query: 201 YSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGTIITVELPDGFMK-----LLAMTPI---- 250
            +G R S+     V  + + +   + T K      V +     K     L+   P+    
Sbjct: 146 GTGARISEVIALSVDDMSDNDGILVLTGKGNKQRMVPVGSQAQKAVEEYLVRARPVLSKG 205

Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELM 308
                F+N     ++        K    +AG+NKS   H +R   AT   + GA    + 
Sbjct: 206 KSHALFLNTRGGALSRQSAWAALKLAVQRAGLNKSISPHTLRHSFATHLLEGGADVRTVQ 265

Query: 309 ATYGWKTVDQAETYTK-GADRIR 330
              G  +V   + YT   AD +R
Sbjct: 266 ELLGHSSVTTTQIYTHVTADSLR 288


>gi|255282461|ref|ZP_05347016.1| tyrosine recombinase XerD [Bryantella formatexigens DSM 14469]
 gi|255267045|gb|EET60250.1| tyrosine recombinase XerD [Bryantella formatexigens DSM 14469]
          Length = 304

 Score =  134 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 42/286 (14%), Positives = 96/286 (33%), Gaps = 31/286 (10%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTK------HIRSGVESRKHTPSSAIQFLT 138
            + + ++ +S++    ++          K+              +E    + SS  + + 
Sbjct: 26  KNASNSTVMSYQRDLKKLFHYLSGKGVEKVQDVTATSLNSYILQMEKEGFSTSSVSRTIA 85

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFWSEGSQPRL 194
           S+R  F + V+ + V  +P  +++ P  + +     T E+    + Q +   ++G + + 
Sbjct: 86  SIRAFFHFLVKTKAVTEDPSDNLKAPHVEKKTPEILTLEETVQLLNQPELDSAKGIRDKA 145

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM------- 247
             E L  +G+R S+     +  +   +  +  + +     +       K L         
Sbjct: 146 MLELLYATGMRVSELISMKLTDVNMAMGYVLCRDSDKERVIPFGTEAEKALKRYLEESRS 205

Query: 248 ---TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302
                   E  F+N   + M+   F    K  + +AG+ K  + H +R          GA
Sbjct: 206 VLLKGKESEFLFVNCSGKSMSRQGFWKIIKFYSAQAGITKDITPHTLRHSFGAHLVQNGA 265

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
               +    G   +   + Y            N RR+  +     P
Sbjct: 266 DLRAVQEMMGHSDISTTQIY---------MDMNVRRVREIYAKAHP 302


>gi|148655021|ref|YP_001275226.1| phage integrase family protein [Roseiflexus sp. RS-1]
 gi|254799356|sp|A5URM3|XERC_ROSS1 RecName: Full=Tyrosine recombinase xerC
 gi|148567131|gb|ABQ89276.1| phage integrase family protein [Roseiflexus sp. RS-1]
          Length = 313

 Score =  134 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 42/276 (15%), Positives = 97/276 (35%), Gaps = 26/276 (9%)

Query: 75  ISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDF------DYRKITTKHIRSGVESRK 127
           +  + +  A   +LA N+  ++ +  DQ              D            +  R+
Sbjct: 5   VEAFLRHLADERNLAANTIAAYRTDLDQFCDFVSARNRREWRDVSHDDILSFMLYLRERR 64

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----- 182
           +  S+  + + +++  F +      V  +P   ++ PK   +  R  T   + +      
Sbjct: 65  YASSTVARRVAAVKSFFAFLTGSGAVPHDPTERIDSPKVDRDLPRALTPHQVDELLELPL 124

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGF 241
           +S   E  + +   E L  +G+R S+     +  +     +++ T K G +  + +    
Sbjct: 125 RSPTPERIRDKAMLELLYATGMRVSELVALNMTDIDLVHSTVRCTGKNGRVRVLPINGSA 184

Query: 242 MKLL------------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHG 288
              L              +    +  F+N+  +++    F +  K  A + G+   + H 
Sbjct: 185 ATALEEYCDNSRSQLARGSDAPIDALFLNHRGKRLTRQGFWLILKQYAEEMGLGELTPHM 244

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +R   A    +AGA    +    G  ++   + YT 
Sbjct: 245 LRHSFAVHMLNAGADLRAVQELLGHTSISTTQIYTH 280


>gi|116748125|ref|YP_844812.1| tyrosine recombinase XerD [Syntrophobacter fumaroxidans MPOB]
 gi|116697189|gb|ABK16377.1| tyrosine recombinase XerD subunit [Syntrophobacter fumaroxidans
           MPOB]
          Length = 294

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 51/275 (18%), Positives = 100/275 (36%), Gaps = 23/275 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGD---FDYRKITTKHIRSGVES--RKHTPSSAIQFLTS 139
             L+ N+   +     +++   G      +  ++ + I S +ES   + +  S  + L +
Sbjct: 16  KGLSPNTVAGYGGDLQEMLGYFGKHGVSSWEAVSREDIVSYLESVSGRLSHRSKARRLAA 75

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLA 195
           +R  FK+  R   ++ +P   V  PK      +  T  ++    +  + G+    + R  
Sbjct: 76  LRAFFKYLERTGKMSGSPAALVRFPKFNPGLPKTLTGREVDALLAAPAAGTPLGQRDRAM 135

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFMKLLAMTPIGKET 254
            E L  +GLR S+     +  +      +  +  G     V + +   + L +       
Sbjct: 136 LELLYATGLRVSELADLQLDQVHLEAGYLVARGKGDKERPVPMGEPAGEALQIYLRDGRR 195

Query: 255 ----------FFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGA 302
                      F+N    K+         K  A K+G+  N + H +R   AT   + GA
Sbjct: 196 RLLKDGRSREVFLNRRAVKLTRQGIWKIIKQYALKSGIRQNLTPHVLRHSFATHLLENGA 255

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
               L A  G   +   + YT  A + RL   + +
Sbjct: 256 DLRSLQAMLGHADISTTQIYTHVA-KKRLKEVHLK 289


>gi|304383186|ref|ZP_07365659.1| probable integrase [Prevotella marshii DSM 16973]
 gi|304335657|gb|EFM01914.1| probable integrase [Prevotella marshii DSM 16973]
          Length = 407

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 55/311 (17%), Positives = 105/311 (33%), Gaps = 43/311 (13%)

Query: 34  RLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG-SLAVNSR 92
           RL       F+  Y + +   T K   +   +      K  + EY     +     + ++
Sbjct: 114 RLKKDRNINFLDYYQAYIDSYTKK--DLRMIKIALNRFKDFLKEYYPLYEFSIKPDLITK 171

Query: 93  ISFESYFDQI-IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQE 151
              E + + +  R  G+                        A       + + ++A+  E
Sbjct: 172 EMMERFVEYLQSRSVGE-----------------------GAKSIYQRFKKVVRYAIDHE 208

Query: 152 YVAINPCLSV-ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP--RLAFEFLLYSGLRCSD 208
            +  +PC  V  +   +       + +++Q       +   P  R AF   LY GLR  D
Sbjct: 209 VMLKDPCKGVVCKVGEQILRKDVLSMDEIQSLIQCHYDNENPNVRRAFILCLYCGLRFCD 268

Query: 209 SCRAGVQHLQ--NNIFSIKTQKTG-----TIITVELPDGFMKLLAMTPIGKETFFINNDK 261
                 +++   N++   +  KT      + + + L DG + L+   P   +T   N   
Sbjct: 269 VKDLTYKNIDYTNHLLKFEQNKTKGHSANSGVVIPLNDGLLSLIGEAPEDLDTSIFNLP- 327

Query: 262 QKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
                       K    +AG+NK  S H  R   A    + GA    + +  G   +   
Sbjct: 328 ---TYESCCKSVKRWVKRAGINKHISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHT 384

Query: 320 ETYTKGADRIR 330
           E YT+  D+++
Sbjct: 385 EKYTRAVDKLK 395


>gi|317504561|ref|ZP_07962535.1| integrase [Prevotella salivae DSM 15606]
 gi|315664332|gb|EFV04025.1| integrase [Prevotella salivae DSM 15606]
          Length = 407

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 59/367 (16%), Positives = 128/367 (34%), Gaps = 52/367 (14%)

Query: 16  TRHGKIIYYF--RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
            ++G ++ Y   +     ++ + +      +  Y+ A   +  +R+      +    +  
Sbjct: 41  DKNGNLVLYETGKMAGKPKVHIKHNRRKENLQLYLIAKPRTPVERQQNKETLELAAKIHA 100

Query: 74  LISE--------YR----KSAHWGSLAVN-----SRISFE-------SYFDQIIRKSGDF 109
              +        YR    ++ ++           ++            + D +  +   +
Sbjct: 101 EREQQFKESMLGYRLKKDRNVNFLDYYQAYIDSYTKKDLRMVKIALNRFKDFLKEQYPLY 160

Query: 110 DY-------RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162
           ++        K   +H    ++SR      A       + + ++A+  E +  +PC  V 
Sbjct: 161 EFSIKPDLITKDMMEHFVEYLQSRSVG-EGAKSIYQRFKKVVRYAIDHEVMQKDPCKGV- 218

Query: 163 RPKRKTEGIR--PWTKEDMQQFKSFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQ 218
             K   + +R    + +++Q       E   P  R AF   LY GLR  D      +++ 
Sbjct: 219 VCKVDDQVLRKDVLSMDEIQALIQCHYENENPNVRRAFILCLYCGLRFCDVKDLTYKNVD 278

Query: 219 --NNIFSIKTQKTG-----TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI 271
             N++   +  KT      + + + L +G + L+   P    +   N      +    S 
Sbjct: 279 YTNHLLKFEQNKTKGHSAHSGVIIPLNEGLLSLIGEAPEDLSSSIFNLP----SYESCSK 334

Query: 272 WFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             K    +AG+NK  S H  R   A    + GA    + +  G   +   E YT+  D++
Sbjct: 335 SVKRWVKRAGINKHISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVDKL 394

Query: 330 RLGIKNS 336
           +    NS
Sbjct: 395 KEDAINS 401


>gi|90580583|ref|ZP_01236388.1| tyrosine recombinase [Vibrio angustum S14]
 gi|90438241|gb|EAS63427.1| tyrosine recombinase [Photobacterium angustum S14]
          Length = 298

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 37/265 (13%), Positives = 91/265 (34%), Gaps = 23/265 (8%)

Query: 85  GSLAVNSRISFESYFDQII-----RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
             L+ N+  S+ +   +++                  +  +  +  + +  +S  + +++
Sbjct: 19  RGLSENTLSSYRNDLTKLLRWLKQESRNVISVSVDDLQRYQQWLFDKDYKQTSRARMVSA 78

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195
           +R LF++  R++    +P   +  PK      +  ++  +               + +  
Sbjct: 79  IRRLFQYLHREKMRDDDPSAMLVTPKLPKRLPKDLSEAQVDALLEAPDVNDPIELRDKAM 138

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAMTP----- 249
            E L  +GLR ++     ++++      ++ T K      V + +  +  +         
Sbjct: 139 LELLYATGLRVTELVTLTMENISLRQGVVRITGKGDKERLVPMGENAVDWIEQFIETGRP 198

Query: 250 -----IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATISADAG 301
                   +  F +   ++M    F    K  A  AG++    S H +R   AT   + G
Sbjct: 199 QLLGEKSSDVLFPSRRARQMTRQTFWHRIKHYAVLAGIDADTLSPHVMRHAFATHLLNYG 258

Query: 302 ATAHELMATYGWKTVDQAETYTKGA 326
           A    +    G   +   + YT  A
Sbjct: 259 ADLRVVQMLLGHSDLSTTQIYTHVA 283


>gi|15800830|ref|NP_286846.1| putative integrase for cryptic prophage CP-933M [Escherichia coli
           O157:H7 EDL933]
 gi|15830309|ref|NP_309082.1| integrase [Escherichia coli O157:H7 str. Sakai]
 gi|189404497|ref|ZP_03007478.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC4501]
 gi|189404969|ref|ZP_02812411.2| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC869]
 gi|193066773|ref|ZP_03047793.1| site-specific recombinase, phage integrase family [Escherichia coli
           E22]
 gi|194430215|ref|ZP_03062714.1| site-specific recombinase, phage integrase family [Escherichia coli
           B171]
 gi|217326229|ref|ZP_03442313.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. TW14588]
 gi|218694447|ref|YP_002402114.1| putative integrase from prophage [Escherichia coli 55989]
 gi|260844435|ref|YP_003222213.1| integrase [Escherichia coli O103:H2 str. 12009]
 gi|260844509|ref|YP_003222287.1| integrase [Escherichia coli O103:H2 str. 12009]
 gi|260854263|ref|YP_003228154.1| integrase [Escherichia coli O26:H11 str. 11368]
 gi|261256103|ref|ZP_05948636.1| integrase [Escherichia coli O157:H7 str. FRIK966]
 gi|12514159|gb|AAG55457.1|AE005287_4 putative integrase for cryptic prophage CP-933M [Escherichia coli
           O157:H7 str. EDL933]
 gi|13360515|dbj|BAB34478.1| putative integrase [Escherichia coli O157:H7 str. Sakai]
 gi|189365242|gb|EDU83658.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC4501]
 gi|189372689|gb|EDU91105.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC869]
 gi|192925584|gb|EDV80258.1| site-specific recombinase, phage integrase family [Escherichia coli
           E22]
 gi|194411751|gb|EDX28074.1| site-specific recombinase, phage integrase family [Escherichia coli
           B171]
 gi|217322450|gb|EEC30874.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. TW14588]
 gi|218351179|emb|CAU96883.1| putative integrase from prophage [Escherichia coli 55989]
 gi|257752912|dbj|BAI24414.1| integrase [Escherichia coli O26:H11 str. 11368]
 gi|257759582|dbj|BAI31079.1| integrase [Escherichia coli O103:H2 str. 12009]
 gi|257759656|dbj|BAI31153.1| integrase [Escherichia coli O103:H2 str. 12009]
          Length = 339

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 59/335 (17%), Positives = 102/335 (30%), Gaps = 39/335 (11%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGR-----RIRLPYPHESTFIPAYMSALTGSTPKREYI 61
           LPP V            Y  K  G        R+     +     Y           E  
Sbjct: 13  LPPRVRS------NGYSYVWKPEGSTRSIGLGRVRKTSVAKVWQNY-----------ELE 55

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121
            +      T+  L   +  S  +  LA  ++  +  +   ++   G      + T+ +R 
Sbjct: 56  KAKLHNIMTVAKLWHMFMDSPAFTELAPRTQKDYRQHQKALLMVFGKVLADNVKTEQVRI 115

Query: 122 GVESRK-HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
            ++ R   + + A   L S+  ++ W   + YV  NPC  V +   K   +   T E   
Sbjct: 116 FMDKRGLESKTQANHELASLSRVYGWGYERGYVKNNPCKGVRKFSLKARTVYI-TDEQYA 174

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
              +      Q R+A E       R  D      Q + +    I+  KTGT    E    
Sbjct: 175 AIYA--EAIPQLRIAMEISYLCAARLGDVLELKWQDIMDKGIYIEQNKTGTKQIKEWSPR 232

Query: 241 FMKLLAMT----PIGKETFFINNDKQKMNATQFSIWFKAKATKA----GVN--KSAHGVR 290
               + +         E         K+ A   + W+      A    GV    + H + 
Sbjct: 233 LRTAIQLARNVSSCTCEYVINTTKGGKVIAKTLNNWWNQAKRAAEQKVGVPFGCNFHDI- 291

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           K       +   ++ +     G KT +Q   Y + 
Sbjct: 292 KAKGISDYE--GSSRDKQIFSGHKTENQVLIYDRK 324


>gi|302342643|ref|YP_003807172.1| tyrosine recombinase XerD [Desulfarculus baarsii DSM 2075]
 gi|301639256|gb|ADK84578.1| tyrosine recombinase XerD [Desulfarculus baarsii DSM 2075]
          Length = 311

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 54/295 (18%), Positives = 104/295 (35%), Gaps = 27/295 (9%)

Query: 55  TPKREYINSPRKKPTTLKWLISEYRKS-AHWGSLAVNSRISFESYFDQII---RKSGDFD 110
           +  R     P   P  L  ++  Y    A    LA N+  ++      I      +G   
Sbjct: 2   SQARPSSQPPAALP--LHGMVDVYLDHLAGERGLARNTLAAYADDLADICGFLHDNGVQG 59

Query: 111 YRKITTKHIRSGVESRKHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167
           + ++   H+ + +        +A    + L++ R L  + +R+E ++ +P  ++  PK+ 
Sbjct: 60  WEQVDELHMVAYLAHAAKEGLAANSRARRLSAARGLVGYLLRREKLSADPLATLRGPKKT 119

Query: 168 TEGIRPWTKEDM----QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223
                  ++E+M    +   +    G + R   E +  +GLR S+    GV  +Q  I  
Sbjct: 120 AGLPHFLSQEEMLRLLETPAADSDLGRRDRAMLEAMYGAGLRVSEVIDLGVGQIQFQIGC 179

Query: 224 IKTQKTG-TIITVELPDGF-----------MKLLAMTPIGKETFFINNDKQKMNATQFSI 271
           +  +  G     V L                + L       +T F+N    K++      
Sbjct: 180 LLVRGKGAKERLVPLHQVAIQRLEDYLRGPRQNLLRGQKASDTVFLNARGGKLSRMGVWK 239

Query: 272 WFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
                   AG++   S H +R   AT   + GA    +    G   +   + YT 
Sbjct: 240 ILAKHVAAAGIDHHVSPHTLRHTFATHLLEGGADLRSVQLMLGHADIGTTQIYTH 294


>gi|228473046|ref|ZP_04057803.1| tyrosine recombinase XerD [Capnocytophaga gingivalis ATCC 33624]
 gi|228275628|gb|EEK14405.1| tyrosine recombinase XerD [Capnocytophaga gingivalis ATCC 33624]
          Length = 301

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 48/264 (18%), Positives = 94/264 (35%), Gaps = 24/264 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSG----DFDYRKITTKHIRSGV--ESRKHTPSSAIQFLT 138
             ++ NS  S+    +++         +     I+ + +R  V  +S++    S  + ++
Sbjct: 21  RGMSPNSVQSYLFDLEKLSDYINLHQIEERPENISAETLREFVYQQSKELQARSQSRLIS 80

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FWSEGSQPRL 194
           S++  FK+ + + Y    P   ++ PK   +     + E++    +      SEG + R 
Sbjct: 81  SLKSFFKYLLLENYREDFPMEYIDTPKYGMKLPDTLSVEEIDALIAGIDLSTSEGHRNRA 140

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLL-------- 245
             E L   GLR S+     +  L      I+   K      V + +   K +        
Sbjct: 141 IIETLYGCGLRVSELVNLHLSDLFFEEGFIRVLGKGDKQRLVPISEYTQKQINNYIQHQR 200

Query: 246 ---AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
                     +  F+N   +++         K  A   G+ K  S H  R   AT   + 
Sbjct: 201 KEVPQVKEFTDIVFLNRRGKQLTRAMIFTIIKQTAAAIGLTKTISPHTFRHSFATHLLEN 260

Query: 301 GATAHELMATYGWKTVDQAETYTK 324
           GA    +    G +++   E YT 
Sbjct: 261 GANLRAIQLMLGHESITTTEIYTH 284


>gi|299538027|ref|ZP_07051313.1| hypothetical protein BFZC1_18515 [Lysinibacillus fusiformis ZC1]
 gi|298726609|gb|EFI67198.1| hypothetical protein BFZC1_18515 [Lysinibacillus fusiformis ZC1]
          Length = 278

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 39/251 (15%), Positives = 90/251 (35%), Gaps = 11/251 (4%)

Query: 90  NSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLTSMRVLFKW 146
            + + ++    ++I       +++ITT+ IR  +   E +   P++  + L  +R+ +K+
Sbjct: 21  KTSVLYQRTVSEMI-TYCSIPFQEITTRDIRKWLCHLEEKGRAPATISKKLFGLRLFYKY 79

Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRC 206
            + ++ +A NP  ++  P+             +   +       + R   E L  +G+R 
Sbjct: 80  CLEEQLIAHNPVKAIRLPEINDRMPHYLLPNQLLLLQRMTETNKRERAIVEVLYTTGVRL 139

Query: 207 SDSCRAGVQHLQ--NNIFSIKTQKTGTIITV----ELPDGFMKLLAMTPIGKETFFINND 260
           S+     ++ +     +  I+  K      V       +     L          F+N  
Sbjct: 140 SELVAIQLKDIDWSERLIHIRKGKGKKARIVLFTRMCAEYLQAYLQERDSSCPYLFLNMR 199

Query: 261 K-QKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
             + +        F   + + G+  S H +R   A   A  G +   +    G +   Q 
Sbjct: 200 GTKPLGVRGIQHKFSDYSEELGIPFSPHTLRHTFAAHLAMKGMSLDCIQTLLGHEDPHQT 259

Query: 320 ETYTKGADRIR 330
           + Y +  +  R
Sbjct: 260 QIYARLYNHAR 270


>gi|300703191|ref|YP_003744793.1| site-specific tyrosine recombinase [Ralstonia solanacearum
           CFBP2957]
 gi|299070854|emb|CBJ42155.1| site-specific tyrosine recombinase [Ralstonia solanacearum
           CFBP2957]
          Length = 308

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 48/268 (17%), Positives = 85/268 (31%), Gaps = 23/268 (8%)

Query: 86  SLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESR--KHTPSSAIQFLTSMR 141
            LA N+  ++        +          +     +     +R      S+A +  T  +
Sbjct: 31  GLARNTLDAYRRDLTLYAQWLAGRGKAIDQTEDDDLADYFAARHEASRASTANRRRTVFK 90

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFE 197
             F+WA+R+  V  +P   +   K+     +  ++  ++   +        G + R   E
Sbjct: 91  RFFQWALREHVVGADPSRLLSTAKQPPRIPKTLSEAQVEALIAAPDVDTPLGLRDRAMIE 150

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKT--QKTGTIITVELPDGFMKLLAMTPIGKET- 254
            +  SGLR S+        +  N   ++    K G    V         L        T 
Sbjct: 151 LMYASGLRVSEIVALKSVEVGLNEGVVRVIGGKGGKDRLVPFGAEAGDWLRRYLRDGRTA 210

Query: 255 ---------FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGAT 303
                     F+      M    F    K  A +A ++   S H +R   AT   + GA 
Sbjct: 211 LLGKRTADALFVTARGDGMTRQAFWHLIKRYALRADIHAPLSPHTLRHAFATHLLNHGAD 270

Query: 304 AHELMATYGWKTVDQAETYTKGADRIRL 331
              +    G   +   + YT  A R RL
Sbjct: 271 LRVVQMLLGHADISTTQIYTHVA-RERL 297


>gi|330818124|ref|YP_004361829.1| Tyrosine recombinase XerD [Burkholderia gladioli BSR3]
 gi|327370517|gb|AEA61873.1| Tyrosine recombinase XerD [Burkholderia gladioli BSR3]
          Length = 392

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 46/268 (17%), Positives = 96/268 (35%), Gaps = 22/268 (8%)

Query: 85  GSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGVESRKH-TPSSAIQFLTSM 140
             L+ N+  ++        Q + ++ +     ++   + + + +R     +S+ + L+  
Sbjct: 115 HGLSKNTLDAYRRDLTLFAQWLAQTHEASLDVVSEPILTAYIAARSDGKATSSNRRLSVF 174

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KSFWSEGSQPRLAF 196
           R  + WA+R+   A +P L V   K+        ++  ++      +   + G + R   
Sbjct: 175 RRYYGWALREHRAAADPTLRVLSAKQAPRFPSTLSEGQVEALLGAPEVETALGLRDRTML 234

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLLAM 247
           E +  SGLR S+        +  N   ++    G+   +          +     +    
Sbjct: 235 ELMYASGLRVSELVTLKTVEVGLNDGVVRVMGKGSKERLVPFGEVAHGWIERYLREARPA 294

Query: 248 T--PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGAT 303
                  +  F+    + M   QF    K  A +A +  + S H +R   AT   + GA 
Sbjct: 295 LLGARASDALFVTARGEGMTRQQFWNIIKRHALRAEIRAHLSPHTLRHAFATHLLNHGAD 354

Query: 304 AHELMATYGWKTVDQAETYTKGADRIRL 331
              +    G   +   + YT  A R RL
Sbjct: 355 LRVVQMLLGHSDISTTQIYTHVA-RERL 381


>gi|194440057|ref|ZP_03072113.1| site-specific recombinase, phage integrase family [Escherichia coli
           101-1]
 gi|194421021|gb|EDX37052.1| site-specific recombinase, phage integrase family [Escherichia coli
           101-1]
          Length = 339

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 60/335 (17%), Positives = 103/335 (30%), Gaps = 39/335 (11%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGR-----RIRLPYPHESTFIPAYMSALTGSTPKREYI 61
           LPP V            Y  K  G        RL     +     Y           E  
Sbjct: 13  LPPRVRS------NGYSYVWKPEGSTRTIGLGRLRETSVAKVWQNY-----------ELE 55

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121
            +      T+  L   +  S  +  LA  ++  +  +   ++   G      +  + +R 
Sbjct: 56  KAKLHNIMTVAKLWHMFMDSPAFTELAPRTQKDYRQHQRALLAVFGKVLADNVKIEQVRI 115

Query: 122 GVESRK-HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
            ++ R   + + A   L S+  ++ W   + YV  NPC  V +   K   +   T E   
Sbjct: 116 FMDKRGLESKTQANHELASLSRVYGWGYERGYVKNNPCKGVRKFTLKARTVYI-TDEQYA 174

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
              +      Q R+A E       R  D      Q + +    I+  KTGT    E    
Sbjct: 175 AIYA--EAIPQLRIAMEISYLCAARLGDVLELKWQDIMDKGIYIEQNKTGTKQIKEWSPR 232

Query: 241 FMKLLAMT----PIGKETFFINNDKQKMNATQFSIWF----KAKATKAGVN--KSAHGVR 290
               + +         E         K+ A   + W+    +A   KA V    + H + 
Sbjct: 233 LRTAIQLARNVSSGTCEYVINTTKGGKVIAKTLNNWWNQAKRAAEQKADVPFGCNFHDI- 291

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           K       +   ++ +     G KT +Q   Y + 
Sbjct: 292 KAKGISDYE--GSSRDKQIFSGHKTENQVLIYDRK 324


>gi|319792815|ref|YP_004154455.1| tyrosine recombinase xerd [Variovorax paradoxus EPS]
 gi|315595278|gb|ADU36344.1| tyrosine recombinase XerD [Variovorax paradoxus EPS]
          Length = 303

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 48/270 (17%), Positives = 95/270 (35%), Gaps = 25/270 (9%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDFD-------YRKITTKHIRSGVESRKHTPSSAIQFLT 138
            L+ N+  ++        +  G           ++   +       S K   +SA + LT
Sbjct: 24  GLSKNTLAAYRRDLALFSQWLGKQRSGIALDTAQESDVQAYMGVRLSTKGKATSANRRLT 83

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194
             +  ++WA+R+  +  +P + +   ++    I+  +++ +    +        G + R 
Sbjct: 84  VFKRYYRWALRERRITADPTIRLAPARQMPRAIKTLSEKQVDDLLAAPDVETPLGLRDRA 143

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLL 245
             E +  SGLR S+     V  +  N   ++    G    +          +     +  
Sbjct: 144 MLEVMYASGLRVSELVALKVIDMSLNDGVLRVLGKGNKERLVPFGGEARRWIERYLEESR 203

Query: 246 AMTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAG 301
            +   G++T   F+      M    F I  K +A  AG++   S H +R   AT   + G
Sbjct: 204 PVILDGQQTPDLFVTARGAGMTRVMFWIIVKKQAAAAGIHVPLSPHTLRHAFATHLLNHG 263

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRL 331
                +    G   +     YT  A R RL
Sbjct: 264 VDLRAVQLLLGHADISTTTIYTHVA-RERL 292


>gi|307591252|ref|YP_003900461.1| integrase family protein [Cyanothece sp. PCC 7822]
 gi|306986817|gb|ADN18692.1| integrase family protein [Cyanothece sp. PCC 7822]
          Length = 275

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 48/243 (19%), Positives = 99/243 (40%), Gaps = 10/243 (4%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT---PSSAIQFLTSMRVLF 144
           +  +  ++  +  Q I    +    +IT   +   V     T   P+ A + L  ++ LF
Sbjct: 24  SKTTVKTYVCHVKQFIDFM-NQPLAEITLDDLVLWVNRLNLTYTPPTVANKIL-CIKSLF 81

Query: 145 KWAVRQEYVAINPCLSVERPK-RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203
            + V+  Y++ N    ++ PK R     +   + D+++     + G + R+    +  +G
Sbjct: 82  SFCVKVGYLSFNIGALIKPPKTRDKRAEKILDQGDVKRLIEQATPG-RDRVLLCLIYTTG 140

Query: 204 LRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK 263
           LR S++       L+ N  ++   K   +  + +PD  ++ L   P   E  F  +  + 
Sbjct: 141 LRVSEAVNLTWSDLKGNKLAV-YGKGSKLRFIIVPDWLLEQLQTLPKISEFIFATSTGKP 199

Query: 264 MNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
           ++        K  A KAG++   SAH +R   A+ + + G     L  + G   ++  E 
Sbjct: 200 IDRIFTHRMIKKCAEKAGIDPKTSAHWLRHSHASHAINNGCNVRLLQESLGHSKLETTEK 259

Query: 322 YTK 324
           Y  
Sbjct: 260 YLH 262


>gi|119357566|ref|YP_912210.1| tyrosine recombinase XerD [Chlorobium phaeobacteroides DSM 266]
 gi|119354915|gb|ABL65786.1| tyrosine recombinase XerD [Chlorobium phaeobacteroides DSM 266]
          Length = 304

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 45/265 (16%), Positives = 100/265 (37%), Gaps = 25/265 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRKHT---PSSAIQFLTS 139
            + + N+R+S+ +   + +    +       +T   IR  +     T   P++  + +++
Sbjct: 23  RNFSQNTRVSYRNDLHRYLLTVQETMKPITSVTASDIRQFISELHETGLEPATIARNISA 82

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFWSEG---SQP 192
           +R LF++ V +  +  NP  ++ +PK+        T E+    ++        G    + 
Sbjct: 83  IRSLFRFLVIEHLLEANPAENIHQPKQAKNLPSVLTIEETLRLLEAPILQHPPGKYLLRD 142

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAMTPI- 250
           +   EFL  +G+R S+      Q L      ++   K      V +    +  +      
Sbjct: 143 KAILEFLYATGVRVSELTELQQQSLFLEAGFVRILGKGSKERLVPIGLSAINSINRYRTE 202

Query: 251 ---------GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
                     ++  F+N   +K++        +  A+ +G+ K  S H +R   AT   +
Sbjct: 203 LRIGLINRNSQDYVFLNARGKKLSRMAIYSMVQEYASLSGIEKKISPHTLRHTFATHLLE 262

Query: 300 AGATAHELMATYGWKTVDQAETYTK 324
            GA    +    G  ++   + YT 
Sbjct: 263 GGADLRAVQEMLGHSSILATQLYTH 287


>gi|193070069|ref|ZP_03051016.1| site-specific recombinase, phage integrase family [Escherichia coli
           E110019]
 gi|192956666|gb|EDV87122.1| site-specific recombinase, phage integrase family [Escherichia coli
           E110019]
          Length = 339

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 59/335 (17%), Positives = 102/335 (30%), Gaps = 39/335 (11%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGR-----RIRLPYPHESTFIPAYMSALTGSTPKREYI 61
           LPP V            Y  K  G        R+     +     Y           E  
Sbjct: 13  LPPRVRS------NGYSYVWKPEGSTRTIGLGRVRKTSVAKVWQNY-----------ELE 55

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121
            +      T+  L   +  S  +  LA  ++  +  +   ++   G      + T+ +R 
Sbjct: 56  KAKLHNIMTVAKLWHMFMDSPAFTELAPRTQKDYRQHQKALLMVFGKVLADNVKTEQVRI 115

Query: 122 GVESRK-HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
            ++ R   + + A   L S+  ++ W   + YV  NPC  V +   K   +   T E   
Sbjct: 116 FMDKRGLESKTQANHELASLSRVYGWGYERGYVKNNPCKGVRKFSLKARTVYI-TDEQYA 174

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
              +      Q R+A E       R  D      Q + +    I+  KTGT    E    
Sbjct: 175 AIYA--EAIPQLRIAMEISYLCAARLGDVLELKWQDIMDKGIYIEQNKTGTKQIKEWSPR 232

Query: 241 FMKLLAMT----PIGKETFFINNDKQKMNATQFSIWFKAKATKA----GVN--KSAHGVR 290
               + +         E         K+ A   + W+      A    GV    + H + 
Sbjct: 233 LRTAIQLARNVSSCTCEYVINTTKGGKVIAKTLNNWWNQAKRAAEQKVGVPFGCNFHDI- 291

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           K       +   ++ +     G KT +Q   Y + 
Sbjct: 292 KAKGISDYE--GSSRDKQIFSGHKTENQVLIYDRK 324


>gi|319937629|ref|ZP_08012033.1| tyrosine recombinase xerC [Coprobacillus sp. 29_1]
 gi|319807271|gb|EFW03883.1| tyrosine recombinase xerC [Coprobacillus sp. 29_1]
          Length = 301

 Score =  133 bits (335), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 43/284 (15%), Positives = 90/284 (31%), Gaps = 26/284 (9%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD------FDYRKITTKHIRSGV 123
               + EY     +  + +  +   ++   +  I            D R    +   + +
Sbjct: 4   FDKYVQEYLDVLKYQKNYSSLTIDGYKREIEHFIVYLNKENICDFKDVRYPFLRGYLAQL 63

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM---- 179
            S   +P +    ++S+R L+++   Q Y+  NP L ++  K+          ++M    
Sbjct: 64  HSENLSPKTINHKMSSLRGLYRYLQTQGYIDDNPFLLIDSLKQPLRNPDFLYIDEMMDLL 123

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELP 238
               +    G + +   E +  SGLRCS+     +  +       +   K      V   
Sbjct: 124 DSIDTQTLLGRRNKALLELMYASGLRCSEVVELTLSQIDFERQLLLIHGKGNKDRYVPFH 183

Query: 239 D------------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK--AGVNK 284
           D               +L+A+  +  +  F+N +  KM              +  A    
Sbjct: 184 DYAADWLKTYIEEDRPELMAVKHLEHQFVFVNKNGAKMTNRGIEDIVNRVTQRYDATKKV 243

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
             H  R   AT   + G     +    G   +   + YT   ++
Sbjct: 244 HPHTFRHSFATHLLEQGVDIRVVQELLGHSNLSTTQIYTHVTNQ 287


>gi|212692864|ref|ZP_03300992.1| hypothetical protein BACDOR_02364 [Bacteroides dorei DSM 17855]
 gi|212664653|gb|EEB25225.1| hypothetical protein BACDOR_02364 [Bacteroides dorei DSM 17855]
          Length = 407

 Score =  133 bits (335), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 60/352 (17%), Positives = 116/352 (32%), Gaps = 31/352 (8%)

Query: 8   PPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYI----NS 63
           P F  K   R   +  Y       R           +            + +        
Sbjct: 58  PKFAVKHNRRKENLSLYL--IDKPRTPAERQQNKETLELATKIRAEREQEFKESMLGYRL 115

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG----DFDYRKITTKHI 119
            + +          Y  S     + +  +I+   + D +  +            IT + +
Sbjct: 116 KKDRTVNFLDYFQAYINSYTKKDIRMV-QIALSRFKDFLKEQYPMNEFSIKPELITKEMM 174

Query: 120 RSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR--PWT 175
              V   +       A       + + ++A+  + +  +PC SV   K  ++ +R    +
Sbjct: 175 EQFVAYLQSRSVGEGAKSIYQRFKKVIRYAIDHDVMLKDPCKSVT-CKVDSQMLRKDVLS 233

Query: 176 KEDMQQFKSFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTG- 230
            E++Q+  +   +   P  R AF F LYSGLR  D      +++   N +   +  KT  
Sbjct: 234 PEEIQKLAACHYDNENPNVRRAFIFCLYSGLRFCDVKDLTYKNVDYANRLLKFEQSKTKG 293

Query: 231 ----TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284
               + + + L DG + ++   P  K     +               K    +AG++K  
Sbjct: 294 HSASSGVVIPLNDGLLSIIGEAPADKNCLIFDLP----TYESCCKSVKRWVKRAGIDKHI 349

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
           S H  R   A    + GA    + +  G   +   E YT+  D+++    NS
Sbjct: 350 SWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVDKLKEEAINS 401


>gi|78049232|ref|YP_365407.1| site-specific tyrosine recombinase XerD [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78037662|emb|CAJ25407.1| integrase-recombinase XerD [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 323

 Score =  133 bits (335), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 44/273 (16%), Positives = 92/273 (33%), Gaps = 29/273 (10%)

Query: 85  GSLAVNSRISFESYFDQIIR-----KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
             +A  +  S+    + + R       G     +              ++P S  + L++
Sbjct: 38  QGVARQTLESYRRDLEGLARWRDGAHGGLLGIDRAALFDYLRWRTQANYSPRSTARLLST 97

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195
           +R  +   +R    + +P   ++ P+      +  T+  ++   +        G + R  
Sbjct: 98  LRAFYGLCLRDGVRSDDPTTLIDPPQLPRSLPKALTESQIEALLAAPDVDTPAGLRNRAM 157

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-ITVELPDG--------FMKLLA 246
            E +  +GLR S+        +      ++    G+    V L +           +   
Sbjct: 158 LELMYAAGLRVSELVNLPAVGVNLRQGVLRVTGKGSKDRLVPLGEESQHWLERYLREARP 217

Query: 247 MTPIGKET--------FFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSAT 295
           +    K           FI+  ++ ++  QF    K  A  AG++    S HG+R   AT
Sbjct: 218 LLAANKPVAAVDGQVPLFIDAARRPLSRQQFWALVKRYAAVAGIDPDTVSPHGLRHSFAT 277

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADR 328
              + GA    L    G  ++   + YT  A +
Sbjct: 278 HLLNHGADLRALQMLLGHSSLSTTQIYTLVARQ 310


>gi|83749114|ref|ZP_00946119.1| Integrase/recombinase (XerD/RipX family) [Ralstonia solanacearum
           UW551]
 gi|207721732|ref|YP_002252171.1| integrase/recombinase protein [Ralstonia solanacearum MolK2]
 gi|207742496|ref|YP_002258888.1| integrase/recombinase protein [Ralstonia solanacearum IPO1609]
 gi|83724235|gb|EAP71408.1| Integrase/recombinase (XerD/RipX family) [Ralstonia solanacearum
           UW551]
 gi|206586895|emb|CAQ17480.1| integrase/recombinase protein [Ralstonia solanacearum MolK2]
 gi|206593887|emb|CAQ60814.1| integrase/recombinase protein [Ralstonia solanacearum IPO1609]
          Length = 308

 Score =  133 bits (335), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 48/268 (17%), Positives = 87/268 (32%), Gaps = 23/268 (8%)

Query: 86  SLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESR--KHTPSSAIQFLTSMR 141
            LA N+  ++        +          +     +     +R  +   S+A +  T  +
Sbjct: 31  GLARNTLDAYRRDLTLYAQWLAGRGKAIDQTEDDDLADYFAARHEESRASTANRRRTVFK 90

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFE 197
             F+WA+R+  V  +P   +   K+     +  ++  ++   +        G + R   E
Sbjct: 91  RFFQWALREHVVGADPSRLLSTAKQPPRIPKTLSEAQVEALIAAPDVDTPLGLRDRAMIE 150

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKT--QKTGTIITVELPDGFMKLLAMTPIGKET- 254
            +  SGLR S+        +  N   ++    K G    V         L        T 
Sbjct: 151 LMYASGLRVSEIVALKTVEVGLNEGVVRVIGGKGGKDRLVPFGAEAGDWLRRYLRDGRTA 210

Query: 255 ---------FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGAT 303
                     F+    + M    F    K  A +A ++   S H +R   AT   + GA 
Sbjct: 211 LLGKRTADALFVTARGEGMTRQAFWHLIKRYALRADIHAPLSPHTLRHAFATHLLNHGAD 270

Query: 304 AHELMATYGWKTVDQAETYTKGADRIRL 331
              +    G   +   + YT  A R RL
Sbjct: 271 LRVVQMLLGHADISTTQIYTHVA-RERL 297


>gi|332042840|gb|EGI79039.1| integrase family protein [Lacinutrix algicola 5H-3-7-4]
          Length = 298

 Score =  133 bits (335), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 47/262 (17%), Positives = 94/262 (35%), Gaps = 24/262 (9%)

Query: 85  GSLAVNSRISF----ESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP--SSAIQFLT 138
             L+ NS  ++    +     +   +       I  + I+  + +   T    S  + ++
Sbjct: 18  RGLSNNSIDNYSFDVKKLIKHLEENNIVSSPVNIQKQTIQEFIYAISKTINSRSQSRLIS 77

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194
            ++  F + V ++Y   NP  +++ PK   +     +++++    S       +G + R 
Sbjct: 78  GLKGFFNYLVFEDYRFDNPLDTIDAPKIGRKLPDTLSEQEINNLISAVDLSTPQGERNRC 137

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPD-----------GFM 242
             E L   GLR S+     +  L  +   IK T K      V +                
Sbjct: 138 ILELLYGCGLRVSELTHLKISDLFFDEGYIKVTGKGDKQRFVPIVPATQKFINIYRNEVR 197

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
             + +    K+T F+N   +++         K+ A K  + K  S H  R   AT   + 
Sbjct: 198 NHMVIPSEYKDTLFLNRRGKQLTRAMIFTIVKSLAIKINLGKTISPHTFRHSFATHLLEN 257

Query: 301 GATAHELMATYGWKTVDQAETY 322
           GA    +    G +++   E Y
Sbjct: 258 GADLRAIQLMLGHESITTTEIY 279


>gi|189347316|ref|YP_001943845.1| tyrosine recombinase XerD [Chlorobium limicola DSM 245]
 gi|189341463|gb|ACD90866.1| tyrosine recombinase XerD [Chlorobium limicola DSM 245]
          Length = 306

 Score =  133 bits (335), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 46/265 (17%), Positives = 102/265 (38%), Gaps = 25/265 (9%)

Query: 85  GSLAVNSRISFESYFDQ--IIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF---LTS 139
            + +VN+R S+ +   +  +  +  +     + T  IR  +     T   A      +++
Sbjct: 25  RNFSVNTRESYRNDLKRYLLFMQDENKAIGAVETADIRKFISELHATGLEASTLGRNISA 84

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKSFWSEG---SQP 192
           +R L K+ + +  +  NP  ++++PK         +  ++    +        G    + 
Sbjct: 85  IRSLHKFLLIERTLETNPAETIQQPKLAKNLPDVLSLSEVMSLLEAPLQQNPPGKFLLRD 144

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLL------ 245
           +   EFL  +G+R S+      QHL  +   ++   K      V + +  ++ +      
Sbjct: 145 KAILEFLYAAGVRVSELTALQQQHLYFDAGFVRILGKGSKERLVPVGNAAIEAITQYQNQ 204

Query: 246 ----AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
                +T   ++  F+N   +K++     +  +  A  AG+ K  S H +R   AT   +
Sbjct: 205 LRIGMVTKESEDCLFLNARGKKLSRMAVYLMVREYAALAGIRKNISPHTLRHTFATHLLE 264

Query: 300 AGATAHELMATYGWKTVDQAETYTK 324
            GA    +    G  ++   + YT 
Sbjct: 265 GGADLRAVQEMLGHSSILATQIYTH 289


>gi|54307771|ref|YP_128791.1| site-specific tyrosine recombinase XerD [Photobacterium profundum
           SS9]
 gi|46912194|emb|CAG18989.1| putative integrase/recombinase XerD [Photobacterium profundum SS9]
          Length = 292

 Score =  133 bits (335), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 41/265 (15%), Positives = 96/265 (36%), Gaps = 23/265 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVESRKHTPSSAIQFLTS 139
             L+ N+ +S+ +   ++ R S +  YR +T      +  +  +       +S  + +++
Sbjct: 13  RGLSENTLMSYRNDLTKLRRWSDEKSYRLVTLSSDDLQRYQQWLFDADFKQTSRARMVSA 72

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKSFWSEGSQPRLA 195
           +R L+++  R++    +P   +  P+      +  T+E +        +      + +  
Sbjct: 73  IRRLYQYLYREKVRDDDPSSMMISPRLPKRLPKDLTEEQVGALLDAPDTNNPIELRDKAM 132

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKET 254
            E L  +GLR ++     +++       ++   K G    V + +  +  +         
Sbjct: 133 LELLYATGLRVTELVSLTMENTNLRQGVVRVLGKGGKERLVPMGENAIDWIEEFIDSGRP 192

Query: 255 FFI----------NNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG 301
             +          +   ++M    F    K  A  AG++    S H +R   AT   + G
Sbjct: 193 LLLGEKSSDVLFPSKRARQMTRQTFWHRIKYYAVIAGIDTDTLSPHVMRHAFATHLLNHG 252

Query: 302 ATAHELMATYGWKTVDQAETYTKGA 326
           A    +    G   +   + YT  A
Sbjct: 253 ADLRVVQMLLGHSDLSTTQIYTHVA 277


>gi|303245447|ref|ZP_07331731.1| tyrosine recombinase XerD [Desulfovibrio fructosovorans JJ]
 gi|302493296|gb|EFL53158.1| tyrosine recombinase XerD [Desulfovibrio fructosovorans JJ]
          Length = 307

 Score =  133 bits (335), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 46/269 (17%), Positives = 93/269 (34%), Gaps = 20/269 (7%)

Query: 85  GSLAVNSRISFESYFDQII----RKSGDFDYRKITTKHIRSG-VESRKHTPSSAIQFLTS 139
             LA +S  ++ +     +      +G  +     T  +    + SR     S  + L++
Sbjct: 27  KGLAEHSIKAYSTDITDFLIFLNDHAGSLETVTDDTLFLYLMHLRSRGLASRSLARHLSA 86

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK----SFWSEGSQPRLA 195
           +R  F +A  + ++  +P   +E PK         +++D+ +      +    G + R  
Sbjct: 87  LRGFFAYAAGEGWLPESPAALIENPKLPRLLPDVLSRDDVARLLDAPDTATPLGYRDRTM 146

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLA-------- 246
            E L  +GLR S+     +         ++   K      + +     + L+        
Sbjct: 147 LELLYAAGLRVSELIGLALTDFDAQAGLLRVFGKGSKERLIPIHALAQEFLSTYIQTIRG 206

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATA 304
                ++  F+N   + ++        K  A  AG+  + S H +R   AT   D GA  
Sbjct: 207 AFHPKEQFVFLNRSGRGLSRQAVWKGIKRHALVAGISLHISPHSLRHSFATHLLDGGADL 266

Query: 305 HELMATYGWKTVDQAETYTKGADRIRLGI 333
             +    G   +   E YT       L +
Sbjct: 267 RTVQTLLGHADISATEIYTHVQAERLLAV 295


>gi|225025686|ref|ZP_03714878.1| hypothetical protein EIKCOROL_02588 [Eikenella corrodens ATCC
           23834]
 gi|224941579|gb|EEG22788.1| hypothetical protein EIKCOROL_02588 [Eikenella corrodens ATCC
           23834]
          Length = 344

 Score =  133 bits (335), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 64/334 (19%), Positives = 123/334 (36%), Gaps = 32/334 (9%)

Query: 11  VTKERTRH-GK--IIYYFR-KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
           + + RTR  GK  + YY+  +  GRR  +P   +      Y++A+     K E    P+ 
Sbjct: 16  LARRRTRKNGKTTVYYYYDGREDGRRKEIPLGTD------YIAAVQ-EWSKLEAAKLPKS 68

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG---DFDYRKITTKHIRSGV 123
              T       Y ++      + N+  S  +   ++ +  G        +I   H+R  +
Sbjct: 69  ARVTFPVAAERYLQNII-SHRSRNTISSANNAVRKLSKFFGGENPAPLDEIEPAHVRRYL 127

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI-NPCLSVERPKRKTEGIRPWTKEDMQQF 182
           + RK TP  A   +  +  +F +A  Q + +  NPC +V++  +K   +      +   +
Sbjct: 128 DWRKDTPGGANNEIGYLSAIFNYAREQGWTSKENPCRNVKKHSKKRREVYI----EDYLY 183

Query: 183 KSFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241
           ++ +   SQ  R   +    +G R  D       H+   I  I  QKTG  +  E+    
Sbjct: 184 QAVYQAASQQMRDLMDIAYITGQRPVDIVGIHSSHIHEGILHISQQKTGAKLRFEISGKL 243

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWF-------KAKATKAGVNKSA---HGVRK 291
            +++          F+N+  + ++    S  F         +  +     SA     +R 
Sbjct: 244 KEIIDRIHQDNGYLFLNSHGKPLSRAALSRQFLELRKTVMQQRPELAEELSAFQFRDLRA 303

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKG 325
            +AT    A A         G  +    + Y + 
Sbjct: 304 KAATDIYLA-ADTRSASDQLGHASEQMTKIYIRR 336


>gi|291536378|emb|CBL09490.1| tyrosine recombinase XerD subunit [Roseburia intestinalis M50/1]
 gi|291538752|emb|CBL11863.1| tyrosine recombinase XerD subunit [Roseburia intestinalis XB6B4]
          Length = 294

 Score =  133 bits (335), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 43/269 (15%), Positives = 88/269 (32%), Gaps = 23/269 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRK------SGDFDYRKITTKHIRSGVESRKHTPSSAIQFLT 138
              + N+ +S+E    ++          G     +         +E     P++  + + 
Sbjct: 16  KQTSKNTEVSYERDLRKMNEYLEAQNVYGVSAVTETNLNAYVMFLEREGRKPATVSRSIA 75

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKSFWSEGSQPRL 194
           SM+  F +  ++  +  +P   ++ PK +    R  T E++    +Q      +  + + 
Sbjct: 76  SMKAFFHFLEKERRIESDPAWRLKAPKIEKTMPRILTTEEVTLLLEQPSGNTPKELRDKA 135

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM------- 247
             E L  +G+R S+     V  L   +  +          +   +   + L         
Sbjct: 136 MLELLYATGIRVSELISLKVSDLNLQMEYVICTDIHKERIIPFGNVAREALTRYMQDGRD 195

Query: 248 ---TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGA 302
              +       F N     M+   F    K    KAG+    + H +R   A      GA
Sbjct: 196 HLISQADCPWLFTNCTGGAMSRQGFWKLIKFYGKKAGIESEITPHTLRHSFAAHLISNGA 255

Query: 303 TAHELMATYGWKTVDQAETYTK-GADRIR 330
               +    G   +   + Y++ G  RIR
Sbjct: 256 DLKSVQEMLGHSDISTTQIYSQMGQGRIR 284


>gi|82777635|ref|YP_403984.1| integrase [Shigella dysenteriae Sd197]
 gi|81241783|gb|ABB62493.1| integrase [Shigella dysenteriae Sd197]
          Length = 351

 Score =  133 bits (335), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 62/337 (18%), Positives = 114/337 (33%), Gaps = 30/337 (8%)

Query: 10  FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
           +  ++  R GK    F  G  RRI +     +  I A +  L+ S  +            
Sbjct: 18  YCYRD-PRTGKE---FGLGRDRRIAI-----TEAIQANIELLSDSGRESLIDRIKGADSI 68

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--K 127
           TL   +  Y        +   + + + S    I RK  D     I+TK + + + +   +
Sbjct: 69  TLHAWLDRYETILSERGIRPKTLLDYASKIRAIRRKLPDKPLTDISTKEVAAMLNTYVAE 128

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              +SA    +++  +F+ A+ + +VA NP  +    K +    R    E ++ + +   
Sbjct: 129 GKAASAKLIRSTLVDVFREAIAEGHVATNPVTATRTAKSEVRRSRLTANEYVEIYHAAEP 188

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP--------- 238
                RLA +  + +G R  D CR     + +N   I+  KTG  + + L          
Sbjct: 189 LPIWLRLAMDLAVITGQRVGDLCRMKWSDINDNHLHIEQGKTGAKLAIPLTLTIDALNIS 248

Query: 239 --DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NKSAHGVRK 291
             D   K         ET   +     ++    S +F      +G+       + H +R 
Sbjct: 249 LVDTLQK--CREASSSETIIASKHHDPLSPKTVSKYFTKARNASGLSFDGDPPTFHELR- 305

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
             +                 G K+   A  Y     R
Sbjct: 306 SLSARLYRNQIGDKFAQRLLGHKSDSMAARYRDSRGR 342


>gi|168823065|ref|ZP_02835065.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|204927994|ref|ZP_03219194.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|204322316|gb|EDZ07513.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|205340622|gb|EDZ27386.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|320087473|emb|CBY97238.1| Tyrosine recombinase xerD [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
          Length = 298

 Score =  133 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 42/265 (15%), Positives = 89/265 (33%), Gaps = 23/265 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESR---KHTPSSAIQFLTS 139
            +LA N+  ++      ++                 +++ +  R    +  +S+ + L++
Sbjct: 19  RNLAENTLSAYRRDLSMVVAWLHHRGKTLATAQADDLQTLLAERVEGGYKATSSARLLSA 78

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195
           MR  F+   R++    +P   +  PK      +  ++  +++             + +  
Sbjct: 79  MRRFFQHLYREKCREDDPSAQLASPKLPQRLPKDLSEAQVERLLQAPLIDQPLELRDKAM 138

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKET 254
            E L  +GLR S+     +  +      ++   K      V L +  +  L         
Sbjct: 139 LEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRP 198

Query: 255 FFIN----------NDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG 301
           + +N             Q+M    F    K  A  AG++    S H +R   AT   + G
Sbjct: 199 WLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHG 258

Query: 302 ATAHELMATYGWKTVDQAETYTKGA 326
           A    +    G   +   + YT  A
Sbjct: 259 ADLRVVQMLLGHSDLSTTQIYTHVA 283


>gi|260893180|ref|YP_003239277.1| tyrosine recombinase XerD [Ammonifex degensii KC4]
 gi|260865321|gb|ACX52427.1| tyrosine recombinase XerD [Ammonifex degensii KC4]
          Length = 302

 Score =  133 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 41/265 (15%), Positives = 88/265 (33%), Gaps = 26/265 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG-------VESRKHTPSSAIQFL 137
             LA N+  ++ +             +  +    +R         + +  +  S+  + L
Sbjct: 17  RGLADNTIAAYRTDLKHFCAFVARRQF-SLDPSSLRDACLCYLYELNAAGYLASTVARRL 75

Query: 138 TSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KSFWSEGSQP 192
            +++    + A +  Y+  +P   +  PK      +    E++++     ++   +G + 
Sbjct: 76  AALKSFCAYLATQAGYLPWDPAEELSSPKIPERLPKVLRPEEVERLLTAPRTNTPQGLRD 135

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLA----- 246
           R   E    +G+R S+     V HL      ++   K G    V +       L      
Sbjct: 136 RALLELAYATGMRVSELVGLDVDHLNLEAGYVRVLGKGGKERIVPVGRVAQHYLREYLEK 195

Query: 247 -----MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
                +        F+N    ++         K  A +AG+    S H +R   AT   +
Sbjct: 196 AWPRLVKDRRTSALFVNRRGGRLTRQAVFKLLKDYARQAGLTSAPSPHTLRHSFATHLLE 255

Query: 300 AGATAHELMATYGWKTVDQAETYTK 324
            GA    +    G  ++   + YT 
Sbjct: 256 NGADLRVVQELLGHVSISTTQIYTH 280


>gi|158521685|ref|YP_001529555.1| tyrosine recombinase XerD [Desulfococcus oleovorans Hxd3]
 gi|158510511|gb|ABW67478.1| tyrosine recombinase XerD [Desulfococcus oleovorans Hxd3]
          Length = 297

 Score =  133 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 46/275 (16%), Positives = 96/275 (34%), Gaps = 24/275 (8%)

Query: 74  LISEYRKSA-HWGSLAVNSRISFES----YFDQIIRKSGDF--DYRKITTKHIRSGVESR 126
           L+ +Y         LA NS  ++ S    Y D +  ++ D   +            +  R
Sbjct: 7   LVDQYMSYLLIEKGLAENSLEAYGSDLAAYLDYLKAQNIDRVSETDMPVLLKYLIFLRDR 66

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
                S  + L ++R  +++  +++ +A +P  +++ PK+        + +++++  +  
Sbjct: 67  GLNKRSRSRHLVTLRGFYRYLAQEKVLAFSPAETIDLPKKGLRLPDVLSVDEVKKLLAAP 126

Query: 187 S----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241
                 G +     E +  +GLR S+     VQ +   +  ++   K      V +    
Sbjct: 127 DTTTARGMRDAAMIELMYAAGLRVSELVAMKVQDVNTEVCFVRVFGKGAKERVVPMGAYA 186

Query: 242 MKLLAMTPIGKETFFINN----------DKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289
            + L     G     + N            + M    F    K     AG+ KS   H +
Sbjct: 187 KEKLEAYLSGARPALLKNYASLFLFVAWRGRPMTRQGFWKALKKYGLAAGIRKSIKPHTL 246

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           R   A+   + GA    +    G   +   + YT 
Sbjct: 247 RHSFASHLLEGGADLRSVQIMLGHSDISTTQIYTH 281


>gi|325103648|ref|YP_004273302.1| tyrosine recombinase XerD [Pedobacter saltans DSM 12145]
 gi|324972496|gb|ADY51480.1| tyrosine recombinase XerD [Pedobacter saltans DSM 12145]
          Length = 299

 Score =  133 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 49/265 (18%), Positives = 102/265 (38%), Gaps = 25/265 (9%)

Query: 85  GSLAVNSRISFESYFDQIIR----KSGDFDYRKITTKHIR---SGVESRKHTPSSAIQFL 137
            SL+ NS  ++ +  D++++    +S      K+ T+ +R     +       S+  + +
Sbjct: 18  RSLSPNSVNAYVNDVDKLVQFLSVQSNPKSLLKVNTQDLRNFIKWINEFGLIASTQSRII 77

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPR 193
           + ++  +K+ + ++ +  +P   +E PK + +     T  ++      +     E  + +
Sbjct: 78  SGIKSFYKYLLLEDLIEHDPADIIESPKIRRKLPEVLTVHEINTMLDGFDLSKPENIRNK 137

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFMKLLAM----- 247
              E L  SGLR S+     +  L   +  +K    G     V +    +K L +     
Sbjct: 138 AMLEILYSSGLRVSELTNLKLSDLYRELEFVKVVGKGNKERLVPVGSSALKHLEIYLENI 197

Query: 248 ------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
                     ++  F+N    K++     +  K  AT  G+ K  S H  R   AT   +
Sbjct: 198 RNKLNIQKGNEDIIFLNKRGSKLSRVMVFMIIKDLATAVGIKKNISPHTFRHSFATHLIE 257

Query: 300 AGATAHELMATYGWKTVDQAETYTK 324
            GA    +    G +++   E YT 
Sbjct: 258 GGADLRAIQEMLGHESITTTEIYTH 282


>gi|294787717|ref|ZP_06752961.1| tyrosine recombinase XerD [Simonsiella muelleri ATCC 29453]
 gi|294484010|gb|EFG31693.1| tyrosine recombinase XerD [Simonsiella muelleri ATCC 29453]
          Length = 290

 Score =  133 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 41/262 (15%), Positives = 91/262 (34%), Gaps = 18/262 (6%)

Query: 86  SLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL 143
            LA N+  ++     ++ ++      D+       + S +      P S  + L++ + L
Sbjct: 17  RLAHNTLEAYRRDLSKLAQRLDTQHADFWTADAVALASAIYVSDEQPRSQARSLSACKRL 76

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFEFL 199
           + W V       +P   ++  K      +  T++ ++   +        G + +   E +
Sbjct: 77  YAWLVETGQREDDPTRDLKATKLPHTLPKIITEQQIENLLNMPDCDTPHGLRDKALLELM 136

Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLL----------AMT 248
             +GLR +++ +  +  +  N   + T  K      V L +  +  +           + 
Sbjct: 137 YATGLRVTEAVKLRMNEINLNHGLVNTIGKGDKQRIVPLGEEAVHWIGQYVQFSRPQLLK 196

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHEL 307
               +  F++  K  M      +  K  A   G+   S H +R   AT   + GA    +
Sbjct: 197 GRRCDELFVSQKKSGMTRQLAWLIVKQYADLVGIKSLSPHSLRHAFATHLVNHGADLRTV 256

Query: 308 MATYGWKTVDQAETYTKGADRI 329
               G   +   + YT  A+  
Sbjct: 257 QMLLGHADIATTQIYTHVANER 278


>gi|281424449|ref|ZP_06255362.1| putative integrase [Prevotella oris F0302]
 gi|281401435|gb|EFB32266.1| putative integrase [Prevotella oris F0302]
          Length = 407

 Score =  133 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 57/361 (15%), Positives = 125/361 (34%), Gaps = 52/361 (14%)

Query: 16  TRHGKIIYYF--RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
            ++G  + Y   +     ++ + +      +  Y+ A   +  +R+      +  T ++ 
Sbjct: 41  DKNGNPVLYETGKMAGKPKVHIKHNRRKENLQLYLIAKPRTPVERQQNKETLELATKIRA 100

Query: 74  LISE--------YR----KSAHWGSLAVN-----SRISFE-------SYFDQIIRKSGDF 109
              +        YR    ++ ++           ++            + D +  +   +
Sbjct: 101 EREQQFKESMLGYRLKKDRNVNFLDYYQAYIDSYTKKDLRMIKIALNRFKDFLKEQYPLY 160

Query: 110 DYRKITTKHIRSGVESR-------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162
           ++  I    I   +  R       +     A       + + ++A+  E +  +PC  V 
Sbjct: 161 EF-SIKPDLIIKDMMERFVEYLQSRSVGEGAKSIYQRFKKVVRYAIDHEVMLKDPCKGV- 218

Query: 163 RPKRKTEGIR--PWTKEDMQQFKSFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQ 218
             K   + +R    + +++Q       +   P  R AF   LY GLR  D      +++ 
Sbjct: 219 VCKVDEQILRKDVLSMDEIQSLIQCHYDNENPNVRRAFILCLYCGLRFCDVKDLTYKNID 278

Query: 219 --NNIFSIKTQKTG-----TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI 271
             N++   +  KT      + + + L DG + L+   P    +   N      +    S 
Sbjct: 279 YTNHLLKFEQNKTKGHSANSGVIIPLNDGLLSLIGEAPEDLNSSIFNLP----SYESCSK 334

Query: 272 WFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             K    +AG+NK  S H  R   A    + GA    + +  G   +   E YT+  D++
Sbjct: 335 SVKRWVKRAGINKHISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVDKL 394

Query: 330 R 330
           +
Sbjct: 395 K 395


>gi|242399198|ref|YP_002994622.1| Probable tyrosine recombinase xerC-like protein [Thermococcus
           sibiricus MM 739]
 gi|242265591|gb|ACS90273.1| Probable tyrosine recombinase xerC-like protein [Thermococcus
           sibiricus MM 739]
          Length = 278

 Score =  133 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 44/282 (15%), Positives = 107/282 (37%), Gaps = 20/282 (7%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
           I E++        +  +   +  Y ++ ++   + +YR        + ++   ++  S  
Sbjct: 5   IEEFKTYLELEGKSPQTVRMYTYYVERFLKDVENPNYRS--ALRFLAKLKKEGYSNKSLN 62

Query: 135 QFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK-SFWSEGSQP 192
             + +++  F++  + ++         ++ PK      +  T+ED+++   +      + 
Sbjct: 63  LVVQALKSYFRFEGLDED------AEKLKSPKVPRSLPKSLTREDVKRLLNAVPPTRKRD 116

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVEL----PDGFMKLLA 246
           RL    L  +GLR S+ C   ++ +     + +++  K      V L         K L 
Sbjct: 117 RLIILLLYGTGLRVSEVCNLKIKDIDFNRGVLTVEGGKGAKDRIVPLSGSLLKEIEKYLE 176

Query: 247 MTPIGKETFFI---NNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGAT 303
               G E  F+      K K++        K    KA V+ + H +R   AT   + G  
Sbjct: 177 TRKDGSEYLFVEIRREKKDKISPKTVWYLLKKYGNKANVSVTPHMLRHSFATHMLERGVD 236

Query: 304 AHELMATYGWKTVDQAETYTK-GADRIRLGIKNSRRISSVVD 344
              +    G  ++   + YTK   + ++   + ++ I  +++
Sbjct: 237 IRVIQEILGHSSLSTTQIYTKVTVEHLKKAQEKAKLIDELIE 278


>gi|311279140|ref|YP_003941371.1| integrase family protein [Enterobacter cloacae SCF1]
 gi|308748335|gb|ADO48087.1| integrase family protein [Enterobacter cloacae SCF1]
          Length = 338

 Score =  133 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 62/335 (18%), Positives = 110/335 (32%), Gaps = 35/335 (10%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
            PP V +     GK  + +    G  I L               ++    K E     ++
Sbjct: 13  FPPRVYR-----GKSKFEYHPAGGGSISLCPLDSP---------VSLVWAKYEEAKMKKE 58

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
           +   L+ L  E+ +SA +  L+ ++R  +  Y ++++   G      +  +HIR  ++ R
Sbjct: 59  QSANLQSLALEFFESADFNKLSQDTRKDYTKYSNKLMPVFGKMAPDLVKPQHIRQYMDKR 118

Query: 127 K-HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
              + + A +    +  L+ WA  +  V  NPC  V + K         T E+     S 
Sbjct: 119 GVASQTQANREKAFLSRLYSWAYERGKVKANPCKGVRQFKEVERDRYT-TDEEYDALYSV 177

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
                  ++A E       R  D        L      I+  KTG        D     +
Sbjct: 178 SPV--VVQVAMEIAYLCLARQKDVLTLKKSELLEPGIFIEQHKTGKKQIKAWSDRLRAAI 235

Query: 246 AMTP-------IGKETFFINNDKQKMNATQFSIWFKAKATKA-------GVNKSAHGVRK 291
           A+         +         D QK     F+  ++A   +A         + + H + K
Sbjct: 236 ALAKELQLKAGMSSIYVLHKADGQKYTRDGFNSRWEAAREEARKKFPHLSFDFTFHDL-K 294

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
                  +   T  E     G KT+ Q   Y +  
Sbjct: 295 AKGVSDLE--GTLQEKQQISGHKTITQTARYDRKV 327


>gi|81428597|ref|YP_395597.1| site-specific DNA-tyrosine recombinase, XerC [Lactobacillus sakei
           subsp. sakei 23K]
 gi|78610239|emb|CAI55288.1| Site-specific DNA-tyrosine recombinase, XerC [Lactobacillus sakei
           subsp. sakei 23K]
          Length = 303

 Score =  133 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 108/278 (38%), Gaps = 29/278 (10%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK---ITTKHIRSGVESRK 127
           L++LI +   S          +   +++ D +    G   +++   +  +   + ++ +K
Sbjct: 12  LQYLIVDRHYSPETQK---AYQADIKAFVDFLAANGGLTSFKQVGTLEVQTYLNEMDQKK 68

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-- 185
           ++  +  + ++S+R  +++ +R E++  +P  +V+  K++ +  R + +++M    +   
Sbjct: 69  YSGETIARRISSLRSFYRYLIRNEFLQTDPFETVQLKKQRHKLPRFFYEKEMDALFAAIV 128

Query: 186 --WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVE------ 236
                  + R   E L  +G+R S+  +  +  +       +   K      V       
Sbjct: 129 GQEPLTQRNRAILELLYATGMRVSECAQLTIGQIDFGLRVILVHGKGNKDRYVPFGNHAT 188

Query: 237 ------LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF----KAKATKAGVNKSA 286
                 L DG ++L+A      +  F+N+    + +           K     +G++   
Sbjct: 189 KALQDYLNDGRVQLMAKRQQEHDVVFVNHLGNPITSRGIEYALDQVDKKTCLTSGIH--P 246

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           H +R   AT   D GA    +    G  ++   + YT 
Sbjct: 247 HMIRHTFATHLLDHGADLRTVQELLGHSSLSTTQIYTH 284


>gi|308176942|ref|YP_003916348.1| tyrosine recombinase subunit XerD [Arthrobacter arilaitensis Re117]
 gi|307744405|emb|CBT75377.1| tyrosine recombinase subunit XerD [Arthrobacter arilaitensis Re117]
          Length = 307

 Score =  133 bits (334), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 50/292 (17%), Positives = 93/292 (31%), Gaps = 32/292 (10%)

Query: 75  ISEYRKS-AHWGSLAVNSRISFESYFDQIIR-----------KSGDFDYRKITTKHIRSG 122
           +  Y +  A    LA N+  S+     + +            K  +           R  
Sbjct: 9   LKRYLQHLAIERGLAENTLASYRRDLLRYVDTMQAAGVEQPQKITELAISGYLQDLSRGN 68

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
            + +  +  S  +   ++R L K+   +     NP   ++ P       +  + + +   
Sbjct: 69  EKHKALSARSVARHSVAIRQLHKYWELEGICVPNPAREIQPPAIGQSLPKAISIDQVTSI 128

Query: 183 KS----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT--QKTGTIITVE 236
                     G + R   EFL  +G R S+     V  L     ++     K      V 
Sbjct: 129 LESVSIETPAGLRDRAILEFLYSTGARISEVVDLDVDDLHFAQDAVVRLFGKGSKERVVP 188

Query: 237 L--------PDGFMKL---LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--N 283
           +         D  ++    LA    G    F+N    +++     +     A +AG+   
Sbjct: 189 VGGYAQRAVSDYLVRARPSLAAKGKGTPALFLNQRGGRLSRQSVWLLLSKAAERAGITTE 248

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIK 334
            S H +R   AT   + GA    +    G  +V   + YTK   D +R   +
Sbjct: 249 VSPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTKVTVDSLREAYQ 300


>gi|269103442|ref|ZP_06156139.1| site-specific recombinase XerD [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268163340|gb|EEZ41836.1| site-specific recombinase XerD [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 298

 Score =  133 bits (334), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 37/265 (13%), Positives = 90/265 (33%), Gaps = 23/265 (8%)

Query: 85  GSLAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
             L+ N+  S+ +   ++       K           +  +  +  + +  +S  + +++
Sbjct: 19  RGLSENTLASYRNDLTKLMMWMKEHKLVLESISADDLQRYQQWLFDQDYKQTSRARMVSA 78

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195
           +R +F++  R++    +P   +  PK      +  ++  +               + +  
Sbjct: 79  IRRVFQYLHREKIRVDDPSAMLISPKLPKRLPKDISEAQVDALLDAPNVDDPIELRDKAM 138

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGK-- 252
            E L  +GLR ++     ++++      ++   K      V + +  +  +         
Sbjct: 139 LELLYATGLRVTELVSLTMENISLRQGVVRVVGKGDKERLVPMGENAVDWIEQFLAQGRP 198

Query: 253 --------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATISADAG 301
                   +  F +   Q+M    F    K  A  AG++    S H +R   AT   + G
Sbjct: 199 MLLGEKSSDVVFPSKRAQQMTRQTFWHRIKHYAVLAGIDADTLSPHVMRHAFATHLLNYG 258

Query: 302 ATAHELMATYGWKTVDQAETYTKGA 326
           A    +    G   +   + YT  A
Sbjct: 259 ADLRVVQMLLGHSDLSTTQIYTHVA 283


>gi|218688807|ref|YP_002397019.1| putative integrase from prophage [Escherichia coli ED1a]
 gi|218426371|emb|CAR07196.1| putative integrase from prophage [Escherichia coli ED1a]
          Length = 339

 Score =  133 bits (334), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 59/335 (17%), Positives = 102/335 (30%), Gaps = 39/335 (11%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGR-----RIRLPYPHESTFIPAYMSALTGSTPKREYI 61
           LPP V            Y  K  G        R+     +     Y           E  
Sbjct: 13  LPPRVRS------NGYSYVWKPEGSTRTIGLGRVRKTSVAKVWQNY-----------ELE 55

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121
            +      T+  L   +  S  +  LA  ++  +  +   ++   G      + T+ +R 
Sbjct: 56  KAKLHNIMTVAKLWHMFMDSPAFTELAPRTQKDYRQHQKALLMVFGKVLADNVKTEQVRI 115

Query: 122 GVESRK-HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
            ++ R   + + A   L S+  ++ W   + YV  NPC  V +   K   +   T E   
Sbjct: 116 FMDKRGLESKTQANHELASLSRVYGWGYERGYVKNNPCKGVRKFSLKARTVYI-TDEQYA 174

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
              +      Q R+A E       R  D      Q + +    I+  KTGT    E    
Sbjct: 175 AIYA--EAIPQLRIAMEISYLCAARLGDVLELKWQDIMDKGIYIEQNKTGTKQIKEWSPR 232

Query: 241 FMKLLAMT----PIGKETFFINNDKQKMNATQFSIWFKAKATKA----GVN--KSAHGVR 290
               + +         E         K+ A   + W+      A    GV    + H + 
Sbjct: 233 LRTAIQLARNVSSCTCEYVINTTKGGKVIAKTLNNWWNQAKRSAEQKVGVPFGCNFHDI- 291

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           K       +   ++ +     G KT +Q   Y + 
Sbjct: 292 KAKGISDYE--GSSRDKQIFSGHKTENQVLIYDRK 324


>gi|237785449|ref|YP_002906154.1| integrase/recombinase [Corynebacterium kroppenstedtii DSM 44385]
 gi|237758361|gb|ACR17611.1| integrase/recombinase [Corynebacterium kroppenstedtii DSM 44385]
          Length = 326

 Score =  133 bits (334), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 42/308 (13%), Positives = 98/308 (31%), Gaps = 35/308 (11%)

Query: 51  LTGSTPKREYINSPRKKPTTLKW---LISEYRKSAH-WGSLAVNSRISFESYFDQIIR-- 104
           ++ S P     + PR+   +      +++ Y        + + N+  +++   ++ +   
Sbjct: 1   MSSSGPLTPSADEPREGQHSGADASHMVAAYIDHLAVEKNASPNTLSNYQRDLNKYVAWL 60

Query: 105 KSGDFDYRKITTKHIRSGVESRKHT----------PSSAIQFLTSMRVLFKWAVRQEYVA 154
              D +   +    I   +   +             SSA +   ++R L +++  +  +A
Sbjct: 61  DQHDLNIDSVDEPDIEQFIADLRRGDSTLGWSPLAASSAARATVAVRSLHRFSHEEGQLA 120

Query: 155 INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-------EGSQPRLAFEFLLYSGLRCS 207
            +    V   +         T E + +                + R   E L  +G+R S
Sbjct: 121 RDVAAGVTVLRSGQSLPHALTVEQVNRLIEACPVNESSNPIALRDRAVIELLYGTGMRIS 180

Query: 208 DSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFMKLLAMT---------PIGKETFFI 257
           ++    +  +  N   ++    G     V +    +  +                +  F+
Sbjct: 181 EALNLDIDSIDRNHAYVRVVGKGRKERLVPIGAPALHAIDAWLVRGRPSMVKRSDKALFL 240

Query: 258 NNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKT 315
           N    ++       +  A A + G+  S   H +R   AT     GA    +    G  +
Sbjct: 241 NARGNRLGRQSVWKFLHAAAERCGLGDSVGPHTLRHSYATHLLQGGADIRAVQELLGHAS 300

Query: 316 VDQAETYT 323
           V   + YT
Sbjct: 301 VTTTQIYT 308


>gi|57234468|ref|YP_181457.1| tyrosine recombinase XerC [Dehalococcoides ethenogenes 195]
 gi|57224916|gb|AAW39973.1| tyrosine recombinase XerC [Dehalococcoides ethenogenes 195]
          Length = 307

 Score =  133 bits (334), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 40/264 (15%), Positives = 91/264 (34%), Gaps = 25/264 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE------SRKHTPSSAIQFLT 138
            +++  +  ++ +     +    +               +       +     S  + L+
Sbjct: 16  KNVSAYTLRNYRTDLIGFVNYLIEKKVSSFDKVDRYILRDYMSSLIEKGIVKGSIARKLS 75

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194
           ++R  +++ +R+  +  NP L+   P+         T  ++ +          +G + + 
Sbjct: 76  AVRSFYRYLMREGLIQKNPTLNASSPRLDKRLPEFLTTAEVNKLLRIPDSSTPQGLRDKA 135

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL---------- 244
             E L  SGLR S+  +  +++L  +   I+    G+   + +  G   +          
Sbjct: 136 FMELLYASGLRVSELVKLDIENLDLHSHQIRVWGKGSKERI-VLMGLPAIQSIQTYLNLG 194

Query: 245 --LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADA 300
             L          F+N +  +++A  F       A +AG+ K    H +R   AT   D 
Sbjct: 195 RPLLKGKRNTPALFLNPNGGRLSARSFQERLDKLAHQAGIEKHVHPHMLRHTFATHLLDG 254

Query: 301 GATAHELMATYGWKTVDQAETYTK 324
           GA    +    G   +   + YT 
Sbjct: 255 GADLRVVQELLGHSNLSTTQIYTH 278


>gi|294625207|ref|ZP_06703848.1| tyrosine recombinase [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 11122]
 gi|292600481|gb|EFF44577.1| tyrosine recombinase [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 11122]
          Length = 323

 Score =  133 bits (334), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 45/273 (16%), Positives = 92/273 (33%), Gaps = 29/273 (10%)

Query: 85  GSLAVNSRISFESYFDQIIR-----KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
             +A  +  S+    + + R       G     +              ++P S  + L++
Sbjct: 38  QGVARQTLESYRRDLEGLARWRDGAGGGLLGIDRAVLFDYLRWRTRANYSPRSTARLLST 97

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLA 195
           +R  +   +R    + +P   ++ P+      +  T+  ++   +        G + R  
Sbjct: 98  LRAFYGLCLRDGVRSDDPTALIDPPQLPRSLPKALTESQIEALLAAPDLDTLAGLRDRAM 157

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-ITVEL---------------PD 239
            E +  +GLR S+        +      ++    G+    V L                 
Sbjct: 158 LELMYAAGLRVSELVNLPAVGVNLRQGVLRVTGKGSKDRLVPLGEESQHWLERYLREARP 217

Query: 240 GFMKLLAMTPIGKET-FFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSAT 295
                  +T +  +   FI+  +Q ++  QF    K  A  AG++    S HG+R   AT
Sbjct: 218 LLAANKPVTAVDGQVPLFIDVSRQPLSRQQFWALVKRYAAAAGIDPATVSPHGLRHSFAT 277

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADR 328
              + GA    L    G  ++   + YT  A +
Sbjct: 278 HLLNHGADLRALQMLLGHSSLSTTQIYTLVARQ 310


>gi|212224162|ref|YP_002307398.1| integrase/recombinase [Thermococcus onnurineus NA1]
 gi|254799323|sp|B6YWN8|XERCL_THEON RecName: Full=Probable tyrosine recombinase xerC-like
 gi|212009119|gb|ACJ16501.1| integrase/recombinase [Thermococcus onnurineus NA1]
          Length = 282

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 47/286 (16%), Positives = 101/286 (35%), Gaps = 20/286 (6%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
           +  +I EY         + N+   +  Y  + +   G+   R        + +    ++ 
Sbjct: 4   INEVIEEYETYLDLEGKSPNTIRMYSYYVRRYLEGGGELKARS--ALRFLAKLRREGYSN 61

Query: 131 SSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            S    + ++R  F++    +E         +  PK      +  T+E++++  S     
Sbjct: 62  KSLNLVVQALRSYFRFEGYDEE------AEKLRPPKVPKSLPKSLTREEVRKILSVIPPT 115

Query: 190 S-QPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMK--- 243
             + RL F  L  +GLR S+ C      +    ++  ++  K      V +P   ++   
Sbjct: 116 KKRDRLIFLLLYGAGLRVSELCNLKKSDVDFERSLIIVRGGKGAKDRVVPIPAFLLEGIK 175

Query: 244 -LLAMTPIGKETFFI---NNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISAD 299
             L       E   +      K K++        K    +AG+  + H +R   AT   +
Sbjct: 176 AYLETRDDDSEYLIVEDRRERKDKLSPKTVWYLLKKYGDRAGIRVTPHMLRHSFATHMLE 235

Query: 300 AGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSRRISSVVD 344
            G     +    G   +   + YTK   + +R   + +R I  +++
Sbjct: 236 NGVDIRAIQELLGHSNLSTTQIYTKVTVEHLRKAQEKARLIEGLIE 281


>gi|167756958|ref|ZP_02429085.1| hypothetical protein CLORAM_02507 [Clostridium ramosum DSM 1402]
 gi|167703133|gb|EDS17712.1| hypothetical protein CLORAM_02507 [Clostridium ramosum DSM 1402]
          Length = 312

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 53/282 (18%), Positives = 100/282 (35%), Gaps = 23/282 (8%)

Query: 71  LKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDF----DYRKITTKHIRSGVES 125
           +K  +SEY++       L+ N+  S+           G+         I  +HI   ++ 
Sbjct: 13  IKDALSEYKQYLIVEKGLSKNTIYSYLRDLIAFSNFIGEEYEINQIENINKEHIHLYLKE 72

Query: 126 RKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM---- 179
              T   +S  + L S+R+L+ + V++  V  N   S   PKR  +     ++E+M    
Sbjct: 73  LSKTNCTNSISRKLVSLRMLYIFLVKENIVKENLMSSFTLPKRDKKLPIVLSQEEMIEIL 132

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELP 238
                  +  S+ R   E L  +G+R S+     ++ L   +  IK   K      + + 
Sbjct: 133 DGIIVCDAISSRNRCMVELLYATGMRISELLNLTLKDLNIKMGFIKVIGKGNKERMIPIG 192

Query: 239 DGFMKLLAMTPIG---------KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287
               ++L                   F N   Q+++  +F    +       + K  S H
Sbjct: 193 SYVGEILEQYINDYRAEFNIKNDSLLFFNKHGQRLSREEFYSILQTIVNSTSITKKVSPH 252

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             R   AT   + GA    +    G   +     YT  +++ 
Sbjct: 253 TFRHTFATHLLENGADLRSIQELLGHSDISTTTIYTHISNQK 294


>gi|189425748|ref|YP_001952925.1| tyrosine recombinase XerD [Geobacter lovleyi SZ]
 gi|189422007|gb|ACD96405.1| tyrosine recombinase XerD [Geobacter lovleyi SZ]
          Length = 295

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 55/284 (19%), Positives = 98/284 (34%), Gaps = 19/284 (6%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
           L WL  E   SA+  S        +  Y +++ R + D   +             R   P
Sbjct: 9   LAWLTVEKGLSANTRSAYAADLGRYLDYLERLQRDTPD-SIQPSDIAEFLGKERERGLAP 67

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---- 186
            S  + L+++R+L ++ + + Y   NP   +E P+   +     +  ++ +         
Sbjct: 68  RSRARLLSAIRMLHRFLLIERYAVTNPSAIIEAPRPLKKLPTFLSMAEVDRLLGATHGSR 127

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVEL-------- 237
           SE  + R   E L  +GLR S+      + +   I  + T  K      + +        
Sbjct: 128 SEDIRDRAMLELLYATGLRVSELVNLKQREVNLEIGYLMTIGKGNKERLIPIGAAACHRV 187

Query: 238 PDGFMKLLAMTPIGK--ETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFS 293
            D   ++ +           F++   + M    F    K +A  AGV  S   H +R   
Sbjct: 188 ADYLEQVRSKQDPEGLQPQLFLSRLGEAMTRQAFWNIIKKRALLAGVRTSISPHTLRHSF 247

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
           AT     GA    +    G   +   + YT    R RL   +  
Sbjct: 248 ATHLLANGADLRSVQIMLGHADLSTTQIYTH-VTRERLKQLHRE 290


>gi|307269737|ref|ZP_07551067.1| phage integrase, SAM-like domain protein [Enterococcus faecalis
           TX4248]
 gi|306513847|gb|EFM82449.1| phage integrase, SAM-like domain protein [Enterococcus faecalis
           TX4248]
          Length = 301

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 43/281 (15%), Positives = 103/281 (36%), Gaps = 24/281 (8%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSGVESRKH 128
            + +I E+         +  +  +++S            +    ++  KHI+S +   + 
Sbjct: 3   WEDIILEFCMDITVRGFSKITIKNYKSKLRNTANFFKSINVEPLQLEKKHIKSWIIDMQE 62

Query: 129 T---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
                S+    ++ ++ LF + + ++Y+  NP + +ER K + + I P    +++Q  + 
Sbjct: 63  KEMQASTINVSVSRLKKLFDYMLIEKYIDYNPFVDIERLKEQRKVIYPLNDYEIKQMLTV 122

Query: 186 WSEGSQPRLA------FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239
             +     +A         ++  GLR S+ C    + + NN   I+  K      V +  
Sbjct: 123 AKKHPYKHIAQRNVVILMLMIECGLRISEVCEIRDEDIMNNQIIIRKSKNNKDRAVAVSP 182

Query: 240 GFMKLLAMTPI---------GKETFFINNDKQKMNATQFSIWFKAKATKAGV-NK---SA 286
              K +                  F ++N  +K+N        +    +  + +    S 
Sbjct: 183 ILKKEIIKYQRIKKRKYGLLEGNLFIVSNLGKKLNEKSIWQIMQEIKKQIDIRDCVRFSG 242

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           H +R   A++    G   + L    G  +++  + Y +  +
Sbjct: 243 HTLRHTYASMQLRNGLDIYTLSLNMGHSSIEMTQRYVQTLN 283


>gi|240103689|ref|YP_002959998.1| xerC/D integrase/recombinase protein (xerC/xerD) [Thermococcus
           gammatolerans EJ3]
 gi|239911243|gb|ACS34134.1| xerC/D integrase/recombinase protein (xerC/xerD) [Thermococcus
           gammatolerans EJ3]
          Length = 283

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 43/282 (15%), Positives = 101/282 (35%), Gaps = 20/282 (7%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
           I E+         + N+   +  Y  + +   G  D+R        + +    ++  S  
Sbjct: 9   IEEFATYLDLEGKSPNTIRMYTYYVRRYLEHGGGLDFRS--ALRFLARLRREGYSNRSLN 66

Query: 135 QFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-GSQP 192
             + ++R  F++  + +E         ++ P+      +  T+ED+++  S       + 
Sbjct: 67  LVVQALRAYFRFEGLDEE------AEKLKPPRVPKSLPKALTQEDVRKLLSVIPLTRRRD 120

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAM--- 247
           RL    L  +GLR S+ C    + +     I +++  K      V +P    + +     
Sbjct: 121 RLIVLLLYGAGLRVSELCNLKKEDIDLDRGIITVRGGKGAKDRVVPIPPALTEEIKAYLS 180

Query: 248 -TPIGKETFFINNDKQ---KMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGAT 303
                 E   +   +    +++             KAGV  + H +R   AT   + G  
Sbjct: 181 ERDDDSEYLLVEVRRGTKDRLSPKTVWYLLNRYGKKAGVKVTPHMLRHSFATHMLERGVD 240

Query: 304 AHELMATYGWKTVDQAETYTK-GADRIRLGIKNSRRISSVVD 344
              +    G   +   + YTK   + ++   + ++ + S+++
Sbjct: 241 IRAIQELLGHSNLSTTQIYTKVTVEHLKKAQEKAKLLESLME 282


>gi|227549328|ref|ZP_03979377.1| site-specific tyrosine recombinase XerD [Corynebacterium
           lipophiloflavum DSM 44291]
 gi|227078647|gb|EEI16610.1| site-specific tyrosine recombinase XerD [Corynebacterium
           lipophiloflavum DSM 44291]
          Length = 301

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 49/275 (17%), Positives = 97/275 (35%), Gaps = 30/275 (10%)

Query: 85  GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGVESRKH--------TPSSA 133
             +A N+  ++    ++ I     +G      ++T H+ + V   +         + SSA
Sbjct: 18  RGVAANTLSNYRRDVERYIAWLEAAGISRLDDVSTNHVEAYVADLRRGVGRAKPLSASSA 77

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS--- 190
            + L   R L K+AV +     +   +V  P    +     + +++ +        +   
Sbjct: 78  GRALVVARGLHKFAVAEGLTQADVASAVAPPSAGEKLPDTLSIDEVARLLDACPTRTPCD 137

Query: 191 -QPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
            + +   E L  +G R S+     V  +    ++ ++ T K      V L     + +  
Sbjct: 138 LRDKALLEVLYATGARVSEVLGLVVDDVASDADVLTV-TGKGSKQRLVPLGSHAREAVDA 196

Query: 248 TPIGKE---------TFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATI 296
             +              F+N     ++        K  A +AG+ K  S H +R   AT 
Sbjct: 197 YLVRGRPVLAKGSTYALFLNRRGTALSRQSAWGIIKDAAERAGLAKDISPHTLRHSFATH 256

Query: 297 SADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330
             + GA    +    G  +V   + YT   AD +R
Sbjct: 257 LLEGGADVRTVQELLGHASVTTTQIYTHITADNLR 291


>gi|217967855|ref|YP_002353361.1| tyrosine recombinase XerD [Dictyoglomus turgidum DSM 6724]
 gi|217336954|gb|ACK42747.1| tyrosine recombinase XerD [Dictyoglomus turgidum DSM 6724]
          Length = 296

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 42/264 (15%), Positives = 90/264 (34%), Gaps = 19/264 (7%)

Query: 85  GSLAVNSRISFESYFDQ--IIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTSM 140
            +++ N+  S+    +   I  +    + + +  +  +  + S   ++   S  + ++S+
Sbjct: 16  KNMSPNTIDSYRRDLEDFIIFLQKEKVNIKNLKREEWQRYLVSLYNRYKIKSIARKISSI 75

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLAF 196
           R   K+ +R+ Y+  N    +  PK           ++++ F          G +     
Sbjct: 76  RSFLKFLLREGYINRNYSSFMIIPKIPMYLPEILDNKEIENFLKIPDPLSPLGIRNIAIL 135

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM-------- 247
           E    +G+R S+     VQ +      ++   K      + L D  ++ L          
Sbjct: 136 ETFYATGMRVSELVNLDVQSINLEEKYVRCFGKGDKERIIPLGDYAVESLKKYLLVRDSF 195

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAH 305
            P  ++  F+N   +++         K  +   G+ K  S H  R   AT     GA   
Sbjct: 196 NPKDEKALFLNKKGERITRQGVWFIIKTYSKILGLPKKVSPHTFRHSFATHLLSNGADIR 255

Query: 306 ELMATYGWKTVDQAETYTKGADRI 329
            +    G   V   + YT      
Sbjct: 256 IVQELLGHSDVATTQIYTHIVSSK 279


>gi|225573518|ref|ZP_03782273.1| hypothetical protein RUMHYD_01711 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039115|gb|EEG49361.1| hypothetical protein RUMHYD_01711 [Blautia hydrogenotrophica DSM
           10507]
          Length = 294

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 43/260 (16%), Positives = 88/260 (33%), Gaps = 22/260 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSG------DFDYRKITTKHIRSGVESRKHTPSSAIQFLT 138
              + N+ IS+E   +++                +       S +   K   S+  + + 
Sbjct: 16  KQTSNNTEISYERDLNKMAAYLERQGVYNPLKVTETDLNGYLSYLRRNKFAASTISRSVA 75

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRL 194
           S+R  +++  R   +  +P  +++ PK + +     T E++       S     G + + 
Sbjct: 76  SIRAFYQFLFRAHQIVQDPSENLKPPKVEKKTPEILTVEEVDLLLRQPSLDTAKGLRDKA 135

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL--------A 246
             E L  +G+R S+     V  +  N+  +   +      +   +   + L         
Sbjct: 136 MLELLYATGMRVSELMHLKVSDVNLNLGYVDCSEGARERVIPFGNVCKRALVQYLEQGRE 195

Query: 247 MTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGA 302
                 ET   F N   + M+   F    K  A+ AG+  + + H +R   A      GA
Sbjct: 196 AFQRKGETDILFPNCSGKMMSRQGFWKVLKGYASAAGITTDITPHTLRHSFAAHMLQNGA 255

Query: 303 TAHELMATYGWKTVDQAETY 322
               L    G   +   + Y
Sbjct: 256 DIKSLQEMLGHSDISTTQMY 275


>gi|145295553|ref|YP_001138374.1| site-specific tyrosine recombinase XerD [Corynebacterium glutamicum
           R]
 gi|140845473|dbj|BAF54472.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 304

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 53/277 (19%), Positives = 97/277 (35%), Gaps = 31/277 (11%)

Query: 85  GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGVESRKH--------TPSSA 133
             L+ N+  ++    ++       +G  D R ITT H+ S V+  +         + SSA
Sbjct: 18  RGLSANTLSNYRRDVERYCDWLEAAGLDDIRDITTAHVESYVKDLRRGIDGQQALSASSA 77

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----- 188
            + L   R L K+A+ +  VA +    V  P          +  ++              
Sbjct: 78  GRALIVARGLHKFALMEGEVAADVAADVSPPAMGRHLPDTLSINEVALLIDAIPHSDIAT 137

Query: 189 --GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------EL 237
               + R   E L  +G R S++    V  +      ++    G+   +          +
Sbjct: 138 PVDLRDRALVELLYGTGARISEAIGLAVDDVSEMPEVLRITGKGSKKRIVPFGSMAQQAV 197

Query: 238 PDGFMKLLAMTPIGKET-FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSA 294
            +  ++       GK    F+N     ++        K    +AG++K  S H +R   A
Sbjct: 198 REYLIRARPALSKGKSHALFLNQRGGPLSRQSAWAVLKKTVERAGLDKDISPHTLRHSFA 257

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330
           T   + GA    +    G  +V   + YT   AD +R
Sbjct: 258 THLLEGGADVRVVQELLGHSSVTTTQIYTHITADSLR 294


>gi|15678913|ref|NP_276030.1| integrase-recombinase protein [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|73920472|sp|O26979|XERCL_METTH RecName: Full=Probable tyrosine recombinase xerC-like
 gi|2621988|gb|AAB85391.1| integrase-recombinase protein [Methanothermobacter
           thermautotrophicus str. Delta H]
          Length = 311

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 51/288 (17%), Positives = 100/288 (34%), Gaps = 33/288 (11%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESY----FDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           LI +Y       + + N+  +++S     ++ ++ +   +D R++     R     ++  
Sbjct: 26  LIEDYLIELEIRNYSPNTIKTYKSIVKNFYEFLMNEDDLYDDRRVLRSFKRYIQYLKRDK 85

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
             +         V+ K+    E+  I+    V+ PKR     +   +++++   +     
Sbjct: 86  KVTQNYIYLVTVVVKKF---FEFSGIDCLEEVKAPKRTKSLPKSLNEDEVKSLINAVEVA 142

Query: 190 -----------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
                      ++ RL    L  SGLR S+     +  +  +  +I+ +  G    + L 
Sbjct: 143 DDGSVIRRFIKTRDRLILSLLYSSGLRVSELVSLRINDIDPDERTIRIRGKGDKDRIVLF 202

Query: 239 DG-----FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRK 291
           D       M  L       E  F+N     +      +  K  A KAG+ K  + H +R 
Sbjct: 203 DENTRDLLMDYLKRRIHESEYLFLNRFGDPLTPRYVQMMIKNYARKAGIKKKVTPHILRH 262

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGA--------DRIRL 331
             AT     G     +    G   +   + YT           DR RL
Sbjct: 263 SFATHLLKNGVDIRAIQQLLGHSNLSTTQIYTSVDMQTLKNVYDRARL 310


>gi|169826674|ref|YP_001696832.1| integrase-recombinase protein [Lysinibacillus sphaericus C3-41]
 gi|168991162|gb|ACA38702.1| integrase-recombinase protein [Lysinibacillus sphaericus C3-41]
          Length = 277

 Score =  132 bits (333), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 38/254 (14%), Positives = 92/254 (36%), Gaps = 10/254 (3%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE---SRKHTPSSAIQFLTSMRV 142
             +  +  S++    Q   +S + +Y ++  K IR+ +     +     S    LT+++ 
Sbjct: 16  QFSSETIRSYKISLSQFFSES-EKNYDEVRAKDIRNWLATLSEKGLKIRSIQLKLTALKS 74

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202
            +++ + +  +  NP   V+ PK +        K  +   +    +  + R   E L  +
Sbjct: 75  FYQYCIEENKINHNPTKKVKTPKSEDLLPYYLNKRQLALLQELTKDNLRERAIVEVLYAT 134

Query: 203 GLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITV----ELPDGFMKLLAMTPIGKETFF 256
           G+R ++     ++ +        I+  K      V    E        L +     +  F
Sbjct: 135 GVRINELLNIKLEDIKWDTRQIWIRKGKGNKDRFVLFSHECALRLKNYLHVRYENSDFLF 194

Query: 257 INNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTV 316
            +   + ++     ++F+  + + G   + H +R   A   A+ G     +    G   +
Sbjct: 195 SSPRGKHISCDLVQLFFRKYSKELGFKVTPHTLRHTFAAHLAEKGMEFIYIQDLLGHANI 254

Query: 317 DQAETYTKGADRIR 330
           +    YT+  +  R
Sbjct: 255 NSTRIYTRLMNHAR 268


>gi|224824765|ref|ZP_03697872.1| tyrosine recombinase XerD [Lutiella nitroferrum 2002]
 gi|224603258|gb|EEG09434.1| tyrosine recombinase XerD [Lutiella nitroferrum 2002]
          Length = 296

 Score =  132 bits (333), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 43/267 (16%), Positives = 91/267 (34%), Gaps = 22/267 (8%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-----KHTPSSAIQFLTSM 140
            L+ N+  ++     ++  +  +     +    +     +      +   ++  + +++M
Sbjct: 20  GLSRNTLSAYRRDLLKLGARLDEEGGVHLVEAGVADLQRALLLGVEQEKATTRARLVSAM 79

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKSFWSEGSQPRLAF 196
           R  +++         +P  ++ERPK      +  +++ +    +        G + R   
Sbjct: 80  RRFYQYLHASGQRPDDPSAALERPKHGQPLPKSLSEKHVVALLEAPDVATPLGLRDRAML 139

Query: 197 EFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAM-------- 247
           E L  +GLR S+     +Q +   +   +   K G    V + +     L          
Sbjct: 140 EVLYATGLRVSELVGLTLQQVDLTSGVVMTLGKGGKERLVPMGEVAQDWLGRYLATGRPA 199

Query: 248 --TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATA 304
             T +  E  F+   K  M            A + G+   S H +R   AT   + GA  
Sbjct: 200 LLTGVPCEQVFVTRLKAGMTRQMAWHLISGYARRQGLPPVSPHTLRHAFATHLVNHGADL 259

Query: 305 HELMATYGWKTVDQAETYTKGADRIRL 331
             +    G   +   + YT  A R RL
Sbjct: 260 RVVQLLLGHSDISTTQIYTHVA-RERL 285


>gi|309785081|ref|ZP_07679714.1| integrase [Shigella dysenteriae 1617]
 gi|308927451|gb|EFP72925.1| integrase [Shigella dysenteriae 1617]
          Length = 339

 Score =  132 bits (333), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 62/337 (18%), Positives = 114/337 (33%), Gaps = 30/337 (8%)

Query: 10  FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
           +  ++  R GK    F  G  RRI +     +  I A +  L+ S  +            
Sbjct: 6   YCYRD-PRTGKE---FGLGRDRRIAI-----TEAIQANIELLSDSGRESLIDRIKGADSI 56

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--K 127
           TL   +  Y        +   + + + S    I RK  D     I+TK + + + +   +
Sbjct: 57  TLHAWLDRYETILSERGIRPKTLLDYASKIRAIRRKLPDKPLTDISTKEVAAMLNTYVAE 116

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              +SA    +++  +F+ A+ + +VA NP  +    K +    R    E ++ + +   
Sbjct: 117 GKAASAKLIRSTLVDVFREAIAEGHVATNPVTATRTAKSEVRRSRLTANEYVEIYHAAEP 176

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP--------- 238
                RLA +  + +G R  D CR     + +N   I+  KTG  + + L          
Sbjct: 177 LPIWLRLAMDLAVITGQRVGDLCRMKWSDINDNHLHIEQGKTGAKLAIPLTLTIDALNIS 236

Query: 239 --DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NKSAHGVRK 291
             D   K         ET   +     ++    S +F      +G+       + H +R 
Sbjct: 237 LVDTLQK--CREASSSETIIASKHHDPLSPKTVSKYFTKARNASGLSFDGDPPTFHELR- 293

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
             +                 G K+   A  Y     R
Sbjct: 294 SLSARLYRNQIGDKFAQRLLGHKSDSMAARYRDSRGR 330


>gi|324114504|gb|EGC08473.1| bacteriophage lambda integrase domain-containing protein
           [Escherichia fergusonii B253]
          Length = 357

 Score =  132 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 61/341 (17%), Positives = 113/341 (33%), Gaps = 23/341 (6%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHE---STFIPAYMSALTGSTPKREYINS 63
           LPP +     R+     Y     G+   L        S  I A +  L+ +  +      
Sbjct: 12  LPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAVSEAIQANIELLSENRRESLIDRI 68

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
                 TL   +  Y        +   + + + S    I RK  D     I+TK + + +
Sbjct: 69  KGADVITLHAWLDRYETILSERGIRPKTLLDYASKIRAIRRKLPDKPLADISTKEVAAML 128

Query: 124 ESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
            +   +   +SA    +++  +F+ A+ + +VA NP  +    K +    R    E ++ 
Sbjct: 129 NTYVAEGKAASAKLIRSTLVDVFREAIAEGHVATNPVTATRTAKSEVRRSRLTANEYVEI 188

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241
           + +        RLA +  + +G R  D CR     + +N   I+  KTG  + + L    
Sbjct: 189 YHAAEPLPIWLRLAMDLAVVTGQRVGDLCRMKWSDINDNHLHIEQGKTGAKLAIPLTLRI 248

Query: 242 MKL---------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NKSAH 287
             L               G ET   +   + ++    S +F      +G+       + H
Sbjct: 249 DALNISLADTLQKCRKASGSETIIASTHHEPLSPKTVSKYFTKARNASGLSFDGDPPTFH 308

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
            +R   +                 G K+   A  Y     R
Sbjct: 309 ELR-SLSARLYRNQIGDKFAQRLLGHKSDSMAARYRDSRGR 348


>gi|157265417|ref|YP_001467975.1| phage XerD-like integrase [Thermus phage P74-26]
 gi|156905312|gb|ABU96955.1| phage XerD-like integrase [Thermus phage P74-26]
          Length = 327

 Score =  132 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 49/290 (16%), Positives = 97/290 (33%), Gaps = 14/290 (4%)

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
           +  T++  + E+ K          +   +ES    ++++        +T   +   ++  
Sbjct: 39  EAMTIEQALKEFLKEKRLEGKREKTLRWYESTVRYLLKEHLHKPLDALTRNLVVEVLDKP 98

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
               + A     ++R    W +  EY+  NP    +RPK +       T ++++      
Sbjct: 99  VAPATLANYD-RALRGFVNWLIGVEYLEHNPFKGRKRPKEEFYLKDVLTLDEIKALFKAA 157

Query: 187 SEGSQPR----LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG-- 240
               + R          L SGLR ++ CR  V  +  +  +++         V +     
Sbjct: 158 MRDPRYRYRNASILALALGSGLRAAEICRLQVADILWDEMAVRVHGKTGHGVVPVTRETL 217

Query: 241 --FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATI 296
                 L         +   +  + + +   S W K +A  AG+NK    H +R   AT 
Sbjct: 218 RYLRLYLDRERKATSPYLFVHRNRPLTSEVLSHWIKRQAKVAGINKKVGMHLLRHTFATN 277

Query: 297 SADAGATAHELMATYGWKTVDQAETYTK--GAD-RIRLGIKNSRRISSVV 343
              +G     L      K+      Y     AD R RL   +   ++   
Sbjct: 278 YLKSGGDPFTLQRILRHKSPAMTSRYLHFLTADLRERLEPIDLVSLARKR 327


>gi|159901208|ref|YP_001547455.1| integrase family protein [Herpetosiphon aurantiacus ATCC 23779]
 gi|254799344|sp|A9B1E0|XERC_HERA2 RecName: Full=Tyrosine recombinase xerC
 gi|159894247|gb|ABX07327.1| integrase family protein [Herpetosiphon aurantiacus ATCC 23779]
          Length = 306

 Score =  132 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 104/278 (37%), Gaps = 24/278 (8%)

Query: 85  GSLAVNSRISFESYFDQ-----IIRKSGD-FDYRKITTKHIRSGVESRKHTPSSAIQFLT 138
             L  N+  ++ +  DQ     + R +G   +  +         ++ +++  S+  +   
Sbjct: 16  RGLTGNTIAAYRTDLDQFVNFIVERNTGSWSNVSRDDLLAFLLFLKEKRYATSTIARRTA 75

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-----SEGSQPR 193
           +++  F++   Q  +  NP  +++ PK      +  T   + +           EG + +
Sbjct: 76  AIKSFFEYLQGQHSITTNPTENLDSPKVDRFLPKAITVAQVDELLELPLTTSGPEGLRDK 135

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVEL-------PDGFMKLL 245
              E L  +G+R S+     V  +   I  I+   K      + +        + ++ + 
Sbjct: 136 AMLEVLYATGMRVSELVALDVGDVDLAIHQIRCLGKANKERNLPIVGSASTALEEYLDIA 195

Query: 246 AMTPI---GKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAG 301
                   G    F+N+  +++    F +  K  A + G+ + + H +R   AT   + G
Sbjct: 196 RGQISRNGGDPALFLNHRGKRLTRQGFWLILKGYAERLGLSDLTPHTLRHSFATHMLNRG 255

Query: 302 ATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSRR 338
               E+    G  ++   + YT  + DR     + ++R
Sbjct: 256 KDLREVQELLGHASISTTQIYTHVSNDRAVKYDQAAQR 293


>gi|237732945|ref|ZP_04563426.1| site-specific tyrosine recombinase xerD [Mollicutes bacterium D7]
 gi|229384014|gb|EEO34105.1| site-specific tyrosine recombinase xerD [Coprobacillus sp. D7]
          Length = 302

 Score =  132 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 53/282 (18%), Positives = 100/282 (35%), Gaps = 23/282 (8%)

Query: 71  LKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDF----DYRKITTKHIRSGVES 125
           +K  +SEY++       L+ N+  S+           G+         I  +HI   ++ 
Sbjct: 3   IKDALSEYKQYLIVEKGLSKNTIYSYLRDLIAFSNFIGEEYEINQIENINKEHIHLYLKE 62

Query: 126 RKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM---- 179
              T   +S  + L S+R+L+ + V++  V  N   S   PKR  +     ++E+M    
Sbjct: 63  LSKTNCTNSISRKLVSLRMLYIFLVKENIVKENLMSSFTLPKRDKKLPIILSQEEMIEIL 122

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELP 238
                  +  S+ R   E L  +G+R S+     ++ L   +  IK   K      + + 
Sbjct: 123 DGIIVCDAISSRNRCMVELLYATGMRISELLNLTLKDLNIKMGFIKVIGKGNKERMIPIG 182

Query: 239 DGFMKLLAMTPIG---------KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287
               ++L                   F N   Q+++  +F    +       + K  S H
Sbjct: 183 SYVGEILEQYINDYRAEFNIKNDSLLFFNKHGQRLSREEFYSILQTIVNSTSITKKVSPH 242

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             R   AT   + GA    +    G   +     YT  +++ 
Sbjct: 243 TFRHTFATHLLENGADLRSIQELLGHSDISTTTIYTHISNQK 284


>gi|194432422|ref|ZP_03064709.1| integrase [Shigella dysenteriae 1012]
 gi|194419309|gb|EDX35391.1| integrase [Shigella dysenteriae 1012]
 gi|332095959|gb|EGJ00966.1| integrase [Shigella dysenteriae 155-74]
          Length = 357

 Score =  132 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 60/341 (17%), Positives = 111/341 (32%), Gaps = 23/341 (6%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHE---STFIPAYMSALTGSTPKREYINS 63
           LPP +     R+     Y     G+   L        +  I A +  L+ S  +      
Sbjct: 12  LPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELLSDSGRESLIDRI 68

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
                 TL   +  Y        +   + + + S    I RK  D     I+TK + + +
Sbjct: 69  KGADSITLHAWLDRYETILSERGIRPKTLLDYASKIRAIRRKLPDKPLTDISTKEVAAML 128

Query: 124 ESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
            +   +   +SA    +++  +F+ A+ + +VA NP  +    K +    R    E ++ 
Sbjct: 129 NTYVAEGKAASAKLIRSTLVDVFREAIAEGHVATNPVTATRTAKSEVRRSRLTANEYVEI 188

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241
           + +        RLA +  + +G R  D CR     + +N   I+  KTG  + + L    
Sbjct: 189 YHAAEPLPIWLRLAMDLAVITGQRVGDLCRMKWSDINDNHLHIEQGKTGAKLAIPLTLTI 248

Query: 242 MKL---------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NKSAH 287
             L                 ET   +     ++    S +F      +G+       + H
Sbjct: 249 DALNISLVDTLQKCREASSSETIIASKHHDPLSPKTVSKYFTKARNASGLSFDGDPPTFH 308

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
            +R   +                 G K+   A  Y     R
Sbjct: 309 ELR-SLSARLYRNQIGDKFAQRLLGHKSDSMAARYRDSRGR 348


>gi|78043985|ref|YP_361456.1| phage integrase family site specific recombinase [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77996100|gb|ABB14999.1| site-specific recombinase, phage integrase family [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 312

 Score =  132 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 45/282 (15%), Positives = 96/282 (34%), Gaps = 16/282 (5%)

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK 117
            + I   +     L  L  E+  +     LA  +   +  + ++ +  +G  +      +
Sbjct: 2   PKPIPFKKSLEVNLSQLKEEFLIARQADGLAPRTLEDYRWHIEKFMELTG-ANPTYEAVR 60

Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
                  S   +P      L  ++  F W VR+ Y+  NP   + + K     +R  + E
Sbjct: 61  KAILQHLSEPSSPRYRNIKLQYLKAFFNWCVREGYLPANPTDGIRKAKEDISNVRHVSIE 120

Query: 178 DMQQFKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIK--TQKT 229
            +++  +        G +        + +G R S+  +     L        ++    KT
Sbjct: 121 AVKKLLAQPDKKTYAGLRDYCLMLVQIDTGARPSELLQIKPDDLNLDAREIYVRADVAKT 180

Query: 230 GTIITVELPD----GFMKLLAMTPI---GKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
               T+ +        M+ L + P     +   F + + +++ A ++S   K    +AGV
Sbjct: 181 RIGRTLVISPFTVQALMRFLKIRPSWWSNEVPLFASENGRQLTAQRWSRIVKRYCEEAGV 240

Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             + +G+R   A      G     L    G   +     Y +
Sbjct: 241 KVTPYGLRHTFAIEFLKGGGDPFSLQRILGHTDLTMTRRYVR 282


>gi|46446417|ref|YP_007782.1| XerD protein [Candidatus Protochlamydia amoebophila UWE25]
 gi|46400058|emb|CAF23507.1| probable XerD protein [Candidatus Protochlamydia amoebophila UWE25]
          Length = 291

 Score =  132 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 50/274 (18%), Positives = 97/274 (35%), Gaps = 24/274 (8%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP------S 131
           Y  S     LA N+  ++                   +  H+++ ++            +
Sbjct: 11  YLASE--KGLAQNTLEAYRRDLFSFATFLKQRSVNNWSQIHLQAIIDYLALKQQQHYASA 68

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE--- 188
           S  + L +++VLF++  R+  +  N  L +E PK         + E++ +  +  +    
Sbjct: 69  SICRALIAIKVLFRFLKREGMITTNILLLMETPKLWQLIPDVLSLEEIDRILAIPNIQTW 128

Query: 189 -GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
            G++ +   E L   GLR S+ C+  +  + +    +   K G    V +    +  +  
Sbjct: 129 RGARDKAILETLYACGLRVSELCQLKIYDVDDTFVRV-LGKGGKERIVPIGQQAIAAIDG 187

Query: 248 TPI--------GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATIS 297
                        E  FI    + +         K  A +A + KS   H  R   AT  
Sbjct: 188 YLSFREGGENSRNEFLFITKKSKPLTRALVWKLVKFYARQASIFKSISPHTFRHTFATHL 247

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            D GA    +    G  +++  + YT    +IRL
Sbjct: 248 LDHGADLRVIQDMLGHASINSTDRYTH-VSQIRL 280


>gi|34222917|sp|Q8PGR5|XERD_XANAC RecName: Full=Tyrosine recombinase xerD
 gi|21109924|gb|AAM38394.1| integrase-recombinase XerD [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 305

 Score =  132 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 45/273 (16%), Positives = 91/273 (33%), Gaps = 29/273 (10%)

Query: 85  GSLAVNSRISFESYFDQIIR-----KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
             +A  +  S+    + + R       G     +              ++P S  + L++
Sbjct: 20  QGVARQTLESYRRDLEGLARWRDGAGGGLLGIDRAALFDYLRWRTRANYSPRSTARLLST 79

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195
           +R  +   +R    + +P   ++ P       +  T+  ++   +        G + R  
Sbjct: 80  LRAFYGLCLRDGARSDDPTALIDPPHLPRSLPKALTESQIEALLAAPDLDTPAGLRDRAM 139

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-ITVELPDG--------FMKLLA 246
            E +  +GLR S+        +      ++    G+    V L +           +   
Sbjct: 140 LELMYAAGLRVSELVNLPAVGVNLRQGVLRVTGKGSKDRLVPLGEESQHWLERYLREARP 199

Query: 247 MTPIGKET--------FFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSAT 295
           +    K           FI+  +Q ++  QF    K  A  AG++    S HG+R   AT
Sbjct: 200 LLAANKPVAAVDGQVPLFIDVSRQPLSRQQFWALVKRYAAVAGIDPATVSPHGLRHSFAT 259

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADR 328
              + GA    L    G  ++   + YT  A +
Sbjct: 260 HLLNHGADLRALQMLLGHSSLSTTQIYTLVARQ 292


>gi|296117987|ref|ZP_06836570.1| tyrosine recombinase XerD [Corynebacterium ammoniagenes DSM 20306]
 gi|295969218|gb|EFG82460.1| tyrosine recombinase XerD [Corynebacterium ammoniagenes DSM 20306]
          Length = 322

 Score =  132 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 50/309 (16%), Positives = 99/309 (32%), Gaps = 29/309 (9%)

Query: 50  ALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF 109
           A    +       +P        WL     +     +   N R   + Y   +   +   
Sbjct: 5   AKASKSKIDHAEPAPELVSVAQGWLDHLAVEKGASKNTVSNYRRDLKRYVSWL-TTANIS 63

Query: 110 DYRKITTKHIRSGVESRKHTP--------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSV 161
              ++++ H+ S V   +           +S  + L   R L K+A+ +  + ++    V
Sbjct: 64  TLSEVSSHHVESYVADLRRGWDGQKPLSSASTSRALIVARGLHKFALSEGLIDVDVAAEV 123

Query: 162 ERPKRKTEGIRPWTKEDMQQFKSFWSEGS-------QPRLAFEFLLYSGLRCSDSCRAGV 214
             P          + +++ +       G        + +   E L  +G R S+     V
Sbjct: 124 APPSPGKHLPDSLSIDEVTRLIDSVPAGEVATAVDIRDKALLEMLYGTGARVSELLDLAV 183

Query: 215 QHLQNN-IFSIKTQKTGTIITVEL--------PDGFMKLLAMTPIGKET-FFINNDKQKM 264
             + ++      T K      V L         +  ++       GK    F+N   + +
Sbjct: 184 DDVADSPEILTVTGKGSKQRLVPLGSHARTAIEEYLVRARPQLSRGKSHALFLNTLGKPL 243

Query: 265 NATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           +        +    +AG++K  S H +R   AT     GA    +    G  +V   + Y
Sbjct: 244 SRQSAWAVIQQAVQRAGLDKKVSPHTLRHSFATHLLQGGADVRTVQELLGHSSVTTTQIY 303

Query: 323 TK-GADRIR 330
           T   AD +R
Sbjct: 304 THVTADSLR 312


>gi|223985629|ref|ZP_03635679.1| hypothetical protein HOLDEFILI_02985 [Holdemania filiformis DSM
           12042]
 gi|223962396|gb|EEF66858.1| hypothetical protein HOLDEFILI_02985 [Holdemania filiformis DSM
           12042]
          Length = 323

 Score =  132 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 44/277 (15%), Positives = 82/277 (29%), Gaps = 28/277 (10%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE-----------SRKHTPSSAIQF 136
           +  +  S+    ++      +      +        +             K + SS  + 
Sbjct: 33  SPATADSYGRDLERFAAYLAEKKITDFSQVDKAVMFDYVTLLRSGKITRCKISDSSFSRM 92

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKSFWSEGSQP 192
           L+++R  + + +R + V +NP   +  PK         T + M      F        + 
Sbjct: 93  LSTLRSFYHYLIRYKGVKVNPTRGLRAPKLNRTIPEFLTFDQMMTLFDSFDLNDPAALRN 152

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251
           R   E +   GLR S+ C   +  L  N      T K      V        LL      
Sbjct: 153 RAILETMYACGLRVSEVCSLTLAELDLNERILTVTGKGDKQRIVPFYKRLRTLLTRYLRD 212

Query: 252 KETF---------FINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADA 300
                        F++     +      +        AG+N     H +R   AT   D 
Sbjct: 213 SRALYLKEEHGFVFVSQRGAPITPRAVQLILAQAGQDAGLNQPLHPHILRHSFATHLLDN 272

Query: 301 GATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNS 336
           G     +    G  ++   + YT    DR++  +  +
Sbjct: 273 GVDLRTVQELLGHSSLSTTQIYTHVTVDRLKQSVDAA 309


>gi|168186262|ref|ZP_02620897.1| tyrosine recombinase XerD [Clostridium botulinum C str. Eklund]
 gi|169295813|gb|EDS77946.1| tyrosine recombinase XerD [Clostridium botulinum C str. Eklund]
          Length = 292

 Score =  132 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 47/278 (16%), Positives = 102/278 (36%), Gaps = 20/278 (7%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVESRKH 128
            + +Y +      L+ N+  ++     +       R     +   ++       ++  K 
Sbjct: 4   YLRQYIEDMRKKELSKNTIEAYNRDIIKFGKFLKERDENILNADMVSIMAYVQTLKKEKK 63

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS- 187
             SS I+ + S+R  +K+ +R      NP ++ E PK K       T +++++F +    
Sbjct: 64  ADSSIIRSIVSIRNFYKYLIRIGKDVDNPLINYEVPKNKRNIPEVLTIDEVEKFLNAPEC 123

Query: 188 ---EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK-TGTIITVE------- 236
              +G + +   E +  +G++ S+  R  +  +   +  +K +        +        
Sbjct: 124 NEYKGIRDKAMLELMYATGMKVSELLRVTIFDINLKLCYVKCRGAKDKERIIPIGSYAVN 183

Query: 237 -LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFS 293
            L +       M+    E  F N    KM    F    K  A +AG+NK    + +R   
Sbjct: 184 CLNEYLNVRDKMSAANSEILFCNLRGGKMTRQGFWKIVKKYAKEAGINKKIDSYTLRHSF 243

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           A      GA    +    G  T+   + Y+  + + ++
Sbjct: 244 AVHLLQNGADIKSVQELLGHNTIATTQIYSSISKQNKI 281


>gi|320161519|ref|YP_004174743.1| putative site-specific recombinase [Anaerolinea thermophila UNI-1]
 gi|319995372|dbj|BAJ64143.1| putative site-specific recombinase [Anaerolinea thermophila UNI-1]
          Length = 300

 Score =  132 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 52/280 (18%), Positives = 100/280 (35%), Gaps = 24/280 (8%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
           L + I E+ +      L+  + + +E+   +  R+ GDFD   I  K I   + S   + 
Sbjct: 4   LSYCIDEFLEFKRAQRLSRWTLLDYETVLRRFNREIGDFDIDHIERKTIAHYLASLDLSK 63

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----------- 179
                  T++  L+ WAV   Y  ++    ++ PK +   I P+T++ +           
Sbjct: 64  KRVKNIYTALSSLWTWAVEMGYCTVHIIRQIKPPKPEKRPILPFTRDQIMNMLASTDASK 123

Query: 180 -------QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
                  +  ++    G + R     LL +G+R S+ C   V+ ++ +   I   K    
Sbjct: 124 EYTRPGKRACRNRLKTGVRDRAIILLLLDTGIRASELCGIKVKDIKPHGIYIH-GKGSKD 182

Query: 233 ITVELPD----GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAH 287
             V + +         +      ++  F       ++     +  +    +AGV +   H
Sbjct: 183 RLVPISETTRSALCDYIGEQKDIEKYVFKTEQGNVLSRDALRLIIRRIGDRAGVNDAHPH 242

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
             R   A      G     L A  G +T+D    Y   A 
Sbjct: 243 RFRHTFAINFLRNGGDVFTLQAILGHETLDMVRRYLAIAQ 282


>gi|110639086|ref|YP_679295.1| site-specific recombinase [Cytophaga hutchinsonii ATCC 33406]
 gi|110281767|gb|ABG59953.1| site-specific recombinase [Cytophaga hutchinsonii ATCC 33406]
          Length = 299

 Score =  132 bits (333), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 50/281 (17%), Positives = 95/281 (33%), Gaps = 28/281 (9%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFES-------YFDQIIRKSGDFDYRKITTKHIRSG 122
            K LI ++R       SL+ NS  ++E        + +      G    +    +     
Sbjct: 3   WKILIRQFRDYLKLERSLSGNSVEAYEHDVIKFMQFLELTEPSVGPLQVKGKHIQLFLEY 62

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           +     +  S  + L+ ++  F++ + +E    +P   ++ PK   +     +  +++Q 
Sbjct: 63  ITELGMSAYSQARILSGIKSFFRFLLMEEIRDEDPSSLIDSPKLGRKLPDTLSFPEIEQI 122

Query: 183 KSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH--LQNNIFSIKTQKTGTIITVE 236
                    EG + R   E L   GLR S+     + +    +    +   K      V 
Sbjct: 123 LLAIDLSTPEGMRNRAMLETLYSCGLRVSELTDLKISNLFFDDGFVKV-LGKGNKERLVP 181

Query: 237 LPDGFMK-----------LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284
           +     K            L +    +   F+N    K++        K  A K G+ K 
Sbjct: 182 IGRDARKYIGMYRNEVRCHLDIVKGAENYVFLNRRGNKLSRVMVFTIIKNLAVKIGLKKT 241

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            S H  R   AT   + GA    +    G +++   E YT 
Sbjct: 242 VSPHTFRHSFATHLIEGGADLRAVQEMLGHESITTTEIYTH 282


>gi|121608682|ref|YP_996489.1| tyrosine recombinase XerD [Verminephrobacter eiseniae EF01-2]
 gi|121553322|gb|ABM57471.1| tyrosine recombinase XerD [Verminephrobacter eiseniae EF01-2]
          Length = 303

 Score =  132 bits (333), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 53/284 (18%), Positives = 95/284 (33%), Gaps = 21/284 (7%)

Query: 68  PTTLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
           P  +   +   + +     +     R     Y   +  +            H+++   +R
Sbjct: 4   PDAIDAFLDALWLEDGLARNTLAAYRSDLTRYAQWLHAQQPAVALDDTAEHHLQAYFAAR 63

Query: 127 --KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
             +   +SA + LT +R  F WA+R+  ++ +P   +   +      +  T+  ++    
Sbjct: 64  HAQTRATSANRRLTVLRRYFHWALRERRISADPTARLAAARVPLRVPKTMTETQVEALLQ 123

Query: 185 FWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVE--- 236
               G+    + R   E +  SGLR ++       HL  +      T K G    +    
Sbjct: 124 APDPGTPLGLRDRAMLELMYASGLRVTELVGLKTFHLALDENLLRVTGKGGKERLLPFGV 183

Query: 237 -----LPDGFMKLLAMTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGV--NKSAH 287
                L     +   +   G+ T   F+      M    F I  K  A  AG+    S H
Sbjct: 184 EAGQWLERYLQQARGVILGGQRTDDLFVTRRGCGMTRVMFWIIVKQWARVAGITVPLSPH 243

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            +R   AT   + GA    +    G   +     YT  A R RL
Sbjct: 244 TLRHAFATHLLNHGADLRVVQLLLGHADISTTTIYTHVA-RQRL 286


>gi|227496090|ref|ZP_03926396.1| tyrosine recombinase [Actinomyces urogenitalis DSM 15434]
 gi|226834324|gb|EEH66707.1| tyrosine recombinase [Actinomyces urogenitalis DSM 15434]
          Length = 316

 Score =  132 bits (332), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 49/272 (18%), Positives = 94/272 (34%), Gaps = 32/272 (11%)

Query: 85  GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVES--------RKHTPSSA 133
             L+ N+  ++E    +  R     G  D   +T   + + +E+        R    SSA
Sbjct: 26  RGLSPNTLAAYERDLTRYCRFLLARGVQDLAAVTEADVAAFLEAIRTGDDGGRALAASSA 85

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-----SE 188
            + +T++R   K+ + +    ++P  +V  P+      +  + E++Q             
Sbjct: 86  SRTVTAVRGWHKFLLDEGNTDVDPSAAVHPPQVGRRLPKALSVEEVQALLEAASTDDSPR 145

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVEL---------- 237
             + R   E L  +G R S++    +  L      I+   K      V +          
Sbjct: 146 SLRDRALLELLYATGARISEAVGLVIDDLDRESGCIRLFGKGRKERIVPVGQYAWDALDA 205

Query: 238 -PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK----SAHGVRKF 292
                  +LA    G    F+N   + ++        +  + +AG+      S H +R  
Sbjct: 206 YLVQARPVLAAKGRGVPEVFLNTLGRPLSRQSAWGVLRQASARAGLGADKHVSPHTLRHS 265

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324
            AT     GA    +    G  +V   + YTK
Sbjct: 266 FATHLLAGGADVRVVQEMLGHASVTTTQIYTK 297


>gi|319405344|emb|CBI78962.1| phage-related integrase/recombinase (fragment) [Bartonella sp. AR
           15-3]
          Length = 140

 Score =  132 bits (332), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 39/127 (30%), Positives = 70/127 (55%), Gaps = 2/127 (1%)

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT--GTIIT 234
           ED+ Q+   W+  +  R+  + LLY+GLR  D+ R   + +++NI  +KT+K+   T + 
Sbjct: 4   EDIDQYYHCWAHATHERVWIDVLLYTGLRRDDAVRIAWKCVKDNIIHLKTEKSQFKTDVF 63

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSA 294
           + +     + L + PIG ETF  +   +++    F   F+     A + KSAHG+RK +A
Sbjct: 64  LSILPKLAETLKIGPIGNETFIRSKGNKQLTKESFGKLFRGACNIASIKKSAHGLRKLAA 123

Query: 295 TISADAG 301
           T + ++G
Sbjct: 124 TSAENSG 130


>gi|225025733|ref|ZP_03714925.1| hypothetical protein EIKCOROL_02637 [Eikenella corrodens ATCC
           23834]
 gi|224941514|gb|EEG22723.1| hypothetical protein EIKCOROL_02637 [Eikenella corrodens ATCC
           23834]
          Length = 301

 Score =  132 bits (332), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 46/265 (17%), Positives = 99/265 (37%), Gaps = 22/265 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRV 142
             LA N+   +    +++ R+      D+++     + + V +    P+S ++ L++++ 
Sbjct: 27  RRLAANTLAGYRRDLEKVARRLHAQGLDWQQADADALANAVYAPDEKPASQVRALSAVKQ 86

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLAFEF 198
           L+ +   Q   + NP   +  P++         +  +    +        G + +   E 
Sbjct: 87  LYGFLQLQNRRSDNPAQHLRPPRQGRALPPLIGEAQIDALLAAPDTETIFGLRDKAVLET 146

Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-------------ELPDGFMKLL 245
           L  +GLR S++ +  +Q L      +     G    +              L     +LL
Sbjct: 147 LYATGLRVSEAAQMQLQDLDLQRGVVTVIGKGNKQRIVPLGAEAVYWLERYLKTARGELL 206

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATA 304
             TP   +  F+   +  ++        K  A +AG+   S HG+R   AT   + GA  
Sbjct: 207 KHTP--CDFVFVGQKRSGISRQLVWQMVKRYAAEAGISELSPHGLRHAFATHLVNHGADL 264

Query: 305 HELMATYGWKTVDQAETYTKGADRI 329
             +    G  +++  + YT  A+  
Sbjct: 265 RSVQMMLGHASLNTTQIYTHVANER 289


>gi|134298831|ref|YP_001112327.1| phage integrase family protein [Desulfotomaculum reducens MI-1]
 gi|134051531|gb|ABO49502.1| phage integrase family protein [Desulfotomaculum reducens MI-1]
          Length = 324

 Score =  132 bits (332), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 42/269 (15%), Positives = 97/269 (36%), Gaps = 16/269 (5%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFL 137
           +  S     L+  +   +        +   +   ++ITT  IR+ + +R    S+    L
Sbjct: 55  FLLSKKMEGLSEKTIDKYRKTILDFAKYV-NKPLKRITTADIRTWLSNRDIKISTVRYRL 113

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE 197
             +R  + + + +E VA++P   ++ PK +    +    ++++  +   +   + +   E
Sbjct: 114 AVLRSFYNYLLAEEIVAVDPTRRIKSPKLEKRIPKALNNDELEVLREGCNT-LREKALLE 172

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFS---IKTQKTGTIITVELPDG----FMKLLAMTPI 250
               +G R  +    G   +  N      +   K      V +         K L     
Sbjct: 173 IFYATGCRIGEV--FGANKIDINWQERSLVVLGKGNKERIVFIGARAAHSLKKYLNSRQD 230

Query: 251 GKETFFINNDKQ--KMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHE 306
            ++  F+    +  +++     + FK  A +  ++K+   H  R   AT   + GA   +
Sbjct: 231 NEDALFVTEKGKIQRLSVRSIQLIFKKIANRVVIHKNIYPHIFRHTLATALLNHGARLED 290

Query: 307 LMATYGWKTVDQAETYTKGA-DRIRLGIK 334
           +    G       + Y K + +R +L   
Sbjct: 291 VQDLLGHTNPSTTQIYCKVSPERKKLAYN 319


>gi|251773301|gb|EES53851.1| phage integrase family protein [Leptospirillum ferrodiazotrophum]
          Length = 347

 Score =  132 bits (332), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 57/338 (16%), Positives = 119/338 (35%), Gaps = 14/338 (4%)

Query: 17  RHGKIIY-YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75
           + G + +  F     +  R     E          + G   + ++ +    +  TL  L 
Sbjct: 5   KRGALWWMRFSVQGKQIRRSTGTSERKLADKVYKKVLGEIAEGDWFDRLPGEEKTLSELF 64

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK---HIRSGVESRKHTPSS 132
            +Y +     + +  S I  ++   +++++ GD    +I T+     +         P+S
Sbjct: 65  DKYLEEHSKPNKSSKSYIRDKAISLRMLKEFGDVTLIEIGTEQIFDYKKKRREENLAPAS 124

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
             + +  +R  F+ AV   ++ +NP   + R K K    R  T E+ ++      E  + 
Sbjct: 125 LNKEIAFLRHAFEMAVLWGWLEVNPVSRIPREKVKNRMERWLTGEEEERLLKACPEWLRD 184

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELP----DGFMKLLA 246
            + F   L +G R ++                    QK     TV +     D   ++  
Sbjct: 185 MVIF--ALNTGFRQNEMLSLTWNQVDWDRKAILFWDQKNNGRDTVPVNEKAIDVLKRIGK 242

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAH 305
           +  +     F+ ++     A      F     KA + N   H +R   AT    AG   +
Sbjct: 243 VKSLSSGHVFLTSNGTPFIARNVVRSFSLALEKAKITNFRWHDLRHTFATRLVHAGVDLY 302

Query: 306 ELMATYGWKTVDQAETYT-KGADRIRLGIKNSRRISSV 342
            +     W+++     Y     + +R G++   R++S 
Sbjct: 303 TVQRLGRWRSLSMVMRYAHHNLESLRTGMEAVNRLAST 340


>gi|73748515|ref|YP_307754.1| tyrosine recombinase XerC [Dehalococcoides sp. CBDB1]
 gi|147669296|ref|YP_001214114.1| tyrosine recombinase XerC subunit [Dehalococcoides sp. BAV1]
 gi|289432563|ref|YP_003462436.1| tyrosine recombinase XerC [Dehalococcoides sp. GT]
 gi|73660231|emb|CAI82838.1| tyrosine recombinase XerC [Dehalococcoides sp. CBDB1]
 gi|146270244|gb|ABQ17236.1| tyrosine recombinase XerC subunit [Dehalococcoides sp. BAV1]
 gi|288946283|gb|ADC73980.1| tyrosine recombinase XerC [Dehalococcoides sp. GT]
          Length = 307

 Score =  132 bits (332), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 40/285 (14%), Positives = 98/285 (34%), Gaps = 24/285 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE------SRKHTPSSAIQFLT 138
            +++  +  ++ +     +    +               +      ++     S  + L+
Sbjct: 16  KNVSPYTLRNYRTDLIGFVNYLIEKKVSSFDRVDRYILRDYMSSLIAKGIVKGSIARKLS 75

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194
           ++R  +++ +R+  +  NP L+   P+         T  ++ +          +G + + 
Sbjct: 76  AVRSFYRYLMREGLIQKNPTLNASSPRLDKRLPEFLTVTEVNKLLRVPDSSTPQGLRDKA 135

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT--IITVELPDGFMKL-------- 244
             E L  SGLR S+  +  ++++  +   I+    G+   + +        +        
Sbjct: 136 FMELLYASGLRVSELVKLDIENMDLHSHQIRVWGKGSKERVVLAGLPAIQSIQNYLNLGR 195

Query: 245 -LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAG 301
            L          F+N    +++A  F       A +AG+ K    H +R   AT   D G
Sbjct: 196 PLLKGKRNTPALFLNPTGGRLSARSFQERLDKLAKQAGIEKHVHPHMLRHTFATHLLDGG 255

Query: 302 ATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSRRISSVVDS 345
           A    +    G   +   + YT     + R    +S  ++   ++
Sbjct: 256 ADLRVVQELLGHSNLSTTQIYTHVTKSQARKVYMSSHPLARPQNN 300


>gi|157265299|ref|YP_001467858.1| XerD-like integrase [Thermus phage P23-45]
 gi|156905194|gb|ABU96838.1| XerD-like integrase [Thermus phage P23-45]
          Length = 327

 Score =  132 bits (332), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 49/290 (16%), Positives = 98/290 (33%), Gaps = 14/290 (4%)

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
           +  T++  + E+ K          +   +ES    ++++  +     +T   +   ++  
Sbjct: 39  EAMTIEQALKEFLKEKRLEGKREKTLRWYESTVRYLLKEHLNKPLDALTRNLVVEVLDKP 98

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
               + A     ++R    W +  EY+  NP    +RPK +       T ++++      
Sbjct: 99  VAPATLANYD-RALRGFVNWLIGVEYLEHNPFKGRKRPKEEFYLKDVLTLDEIKALFKAA 157

Query: 187 SEGSQPR----LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG-- 240
               + R          L SGLR ++ CR  V  +  +  +++         V +     
Sbjct: 158 MRDPRYRYRNASILALALGSGLRAAEICRLQVADILWDEMAVRVHGKTGHGVVPVTRETL 217

Query: 241 --FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATI 296
                 L         +   +  + + +   S W K +A  AG+NK    H +R   AT 
Sbjct: 218 RYLRLYLDRERKATSPYLFVHRNRPLTSEVLSHWIKRQAKVAGINKKVGMHLLRHTFATN 277

Query: 297 SADAGATAHELMATYGWKTVDQAETYTK--GAD-RIRLGIKNSRRISSVV 343
              +G     L      K+      Y     AD R RL   +   ++   
Sbjct: 278 YLKSGGDPFTLQRILRHKSPAMTSRYLHFLTADLRERLEPIDLVSLARKR 327


>gi|222053854|ref|YP_002536216.1| tyrosine recombinase XerC [Geobacter sp. FRC-32]
 gi|221563143|gb|ACM19115.1| tyrosine recombinase XerC [Geobacter sp. FRC-32]
          Length = 294

 Score =  132 bits (332), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 52/274 (18%), Positives = 105/274 (38%), Gaps = 22/274 (8%)

Query: 72  KWLISEYRKS-AHWGSLAVNSRISFES-------YFDQIIRKSGDFDYRKITTKHIRSGV 123
           K LI ++ +  A   +++ ++   + S       + D+   ++       +  +   +G+
Sbjct: 2   KKLIDQFCRYLAIERNVSPHTVAGYRSDLTFFLSFLDREKVQADVGSISHLLIRRYIAGL 61

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM---- 179
               H  SS  + L ++R LFK+ +RQ  V+ NP   V  PK++ +     T +++    
Sbjct: 62  YKD-HQKSSIGRQLAAIRALFKYLLRQGLVSKNPAELVSTPKKEKKIPYHLTIDEVTTLV 120

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVEL- 237
           +  +       + R   E L   G+R S+     V  ++ N   I+   K      V + 
Sbjct: 121 EAPQQEDLLSLRDRAILELLYSCGIRVSELTALNVGEVEMNERLIRVCGKGNKERIVPIG 180

Query: 238 ---PDGFMKLLAM--TPIGKETFFINNDKQKMNATQFSIWFKAKATK-AGVNK-SAHGVR 290
               +     L+   TP  +    +N    ++ +   +        K A + K S H +R
Sbjct: 181 RKALEALADYLSARNTPPEEAPLILNARGTRLTSRSVARIVDRYIVKIATMKKISPHTLR 240

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              AT   + GA    +    G  ++   + YT 
Sbjct: 241 HTFATHMLEGGADLRAIQELLGHASLSTTQKYTH 274


>gi|257056527|ref|YP_003134359.1| tyrosine recombinase XerD subunit [Saccharomonospora viridis DSM
           43017]
 gi|256586399|gb|ACU97532.1| tyrosine recombinase XerD subunit [Saccharomonospora viridis DSM
           43017]
          Length = 311

 Score =  132 bits (332), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 49/261 (18%), Positives = 89/261 (34%), Gaps = 27/261 (10%)

Query: 89  VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT--------PSSAIQFLTSM 140
                    Y   +   +G  D R++   H+     S +H         PSSA + L+++
Sbjct: 32  DGYARDLRRYLAHLAD-AGVTDLRQVARDHVVGFAASLRHGEGDRPPLAPSSAARALSAV 90

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAF 196
           R L ++A  + +   +P   V  P       +     D+ +  +      +   + R   
Sbjct: 91  RGLHRFAHAEGWTEEDPARDVRPPPLTRRLPKALPVADVLRLLNTPTGDDARSLRDRALL 150

Query: 197 EFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGTIITVELPDGFMKLL---------- 245
           E L  +G R S++    V  +       +   K G    V +    ++ L          
Sbjct: 151 ELLYSTGARISEATGLDVDDVDRAERTVVLDGKGGRQRLVPVGRPALEALDAYLIRARPA 210

Query: 246 -AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGA 302
            A    G    F+N    +++        K  A +AG+    S H +R   AT   + GA
Sbjct: 211 LAAKGRGTGAVFLNARGGRLSRQGAWQVLKVAAERAGISTPVSPHTLRHSFATHLLEGGA 270

Query: 303 TAHELMATYGWKTVDQAETYT 323
               +    G  +V   + YT
Sbjct: 271 DVRVVQELLGHASVTTTQVYT 291


>gi|183221728|ref|YP_001839724.1| tyrosine recombinase xerD [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
 gi|189911803|ref|YP_001963358.1| site-specific recombinase XerD [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167776479|gb|ABZ94780.1| Site-specific recombinase XerD [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167780150|gb|ABZ98448.1| Tyrosine recombinase xerD [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
          Length = 302

 Score =  132 bits (331), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 44/266 (16%), Positives = 98/266 (36%), Gaps = 22/266 (8%)

Query: 85  GSLAVNSRISFESYFDQ--IIRKSGDFDYRKITTKHIRSGVES---RKHTPSSAIQFLTS 139
             L+ NS  S+    ++  I  +    ++ ++    I   +E    RK +  +  + + +
Sbjct: 24  KGLSDNSIYSYGYDLNKFAIFLEKEHINFLEVKANDIMRFLEEERERKISAKTLAREVVA 83

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLA 195
           +R  +K+   ++ +  NP   +E P+         T+ ++++      E      + +  
Sbjct: 84  IRQFYKYLRDEKRLDSNPTEKIETPEVARTIPDYLTQAEIEELFRNIKEDNLYELRDKCI 143

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-KTGTIITVELPDGFMKLLAMTPIGKET 254
           FE L  SGLR S++C   +  +     +I  + K G    V   +  +++L    +   T
Sbjct: 144 FELLYSSGLRISEACNLKMTDIDMENMTITVEGKGGRQRLVPFGEKSLEILKRYLVESRT 203

Query: 255 ----------FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302
                      F++     +N             +  + K  + H +R   AT   +  A
Sbjct: 204 EILKKRTCDFVFVSKKGSYINRKSVWRLLNHYIKRTKIKKKVTPHTLRHSFATHLLENHA 263

Query: 303 TAHELMATYGWKTVDQAETYTKGADR 328
               +    G   +   + YT  A++
Sbjct: 264 DLKSVQELLGHIDISTTQIYTHMANK 289


>gi|147668730|ref|YP_001213548.1| phage integrase family protein [Dehalococcoides sp. BAV1]
 gi|146269678|gb|ABQ16670.1| phage integrase family protein [Dehalococcoides sp. BAV1]
          Length = 319

 Score =  132 bits (331), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 43/298 (14%), Positives = 113/298 (37%), Gaps = 16/298 (5%)

Query: 44  IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI- 102
           + +Y    +GS  + +           L   ++ +  +     L+ ++   +    +   
Sbjct: 1   MLSYHLTTSGSHEQPQAKTYHLTNFKNLSGRLNAFVLTCKVARLSPHTIRYYTYALNSFL 60

Query: 103 --IRKSGDFDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPC 158
              +  G     +I   H+R  +   +    P+S + +  +++  F W + +  ++ +P 
Sbjct: 61  GYCQTLGINTVEEIEANHVRLYLVKLQERNNPTSVLDYYKAVKRFFNWLIEEGVLSKSPL 120

Query: 159 LSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQ 215
            +++ P+ + + IRP+T++ ++   +       G + +     +L +GLR S+     ++
Sbjct: 121 ATIKPPRTEQKIIRPFTRQQIEDLLATCGDSPIGLRNKAMILTMLDTGLRVSEMSAIQLK 180

Query: 216 HLQNNIFSIKTQKTGTIITV-----ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS 270
            +  +  +I     G    V     +  +  ++ L          +++     ++     
Sbjct: 181 DVDFDKETIIVMGKGAKQRVVRIGHKAQETILRYLLTRQDECPALWMSTTGSGLSTEGIK 240

Query: 271 IWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           +  +    +AG+     S H  R   AT +   GA   E+ +  G  T+   + YT  
Sbjct: 241 VVVRELGKRAGLTGVRCSPHTFRHTFATQALINGAGEFEVQSLLGHSTLVMTKRYTAS 298


>gi|307546449|ref|YP_003898928.1| site-specific tyrosine recombinase XerD [Halomonas elongata DSM
           2581]
 gi|307218473|emb|CBV43743.1| site-specific tyrosine recombinase XerD [Halomonas elongata DSM
           2581]
          Length = 300

 Score =  132 bits (331), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 42/288 (14%), Positives = 95/288 (32%), Gaps = 25/288 (8%)

Query: 72  KWLISEYRKSAHWGSL--AVNSRISFESYFDQIIRKSGDFDYRKITT--KHIRSGVESRK 127
             LI  +     W     + N+  ++    +    +        +    + +   ++ R+
Sbjct: 8   SALIDAFL-DGLWLERGASDNTLAAYRHDLNTWQARLAGLGATLLAPPPRALPDWLDERR 66

Query: 128 H---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
                  S  + L+S+R  + WA+ +  +  +P   ++ P+          + ++++   
Sbjct: 67  EAGYKLRSNARLLSSLRRFYHWALGEGRIEYDPLAEIKLPRVTPSLPNTLEEGEVERLLE 126

Query: 185 FWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPD 239
                   G + R   E L  +GLR ++        L      ++ +  G     V L +
Sbjct: 127 APDVDTELGLRDRAMLEVLYGAGLRVTELVGLTTDALNLRQGVVRVRGKGDKERLVPLGE 186

Query: 240 GFMKLLAMTPIGKETFFINNDKQK----------MNATQFSIWFKAKATKAGVNKS--AH 287
             +  L++         + +  +           +    F    KA A  AG+++S   H
Sbjct: 187 EAVDWLSLYLRSARGALMRDVTRPALFPGRGDACLTRQAFWYRIKAHARSAGIDRSLSPH 246

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335
            +R   AT   + GA    +    G   +   + YT  A      +  
Sbjct: 247 TLRHAFATHLLNHGANLRVVQLLLGHSDLSTTQIYTHVAQVRLEALHA 294


>gi|312891380|ref|ZP_07750897.1| tyrosine recombinase XerD [Mucilaginibacter paludis DSM 18603]
 gi|311296074|gb|EFQ73226.1| tyrosine recombinase XerD [Mucilaginibacter paludis DSM 18603]
          Length = 299

 Score =  132 bits (331), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 52/266 (19%), Positives = 99/266 (37%), Gaps = 27/266 (10%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKI--------TTKHIRSGVESRKHTPSSAIQF 136
            SL+ NS  ++    D++I +  D    K+          +     V      PSS  + 
Sbjct: 18  KSLSANSVGAYLGDLDKLI-QFADSKLIKLYPDTIGMNDLREFIMWVNELGMIPSSQARI 76

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQP 192
           ++ ++  +K+ +    ++ +P   +E PK   +     +  D+ +          EG + 
Sbjct: 77  ISGIKAFYKYLLMDNQLSYDPSELLEAPKLMRKLPDTLSIVDIDKLIDAIDLSKPEGMRN 136

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE--------LPDGFMK 243
           +   E L   GLR ++     + +L  +I  IK   K      V         L     +
Sbjct: 137 KTMIEVLYGCGLRVTELVNLRISNLYLDIEFIKVLGKGNKERLVPIGAQAIKFLKIWLQE 196

Query: 244 LLAMTPIG---KETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISA 298
           +   TP+    ++  F+N    +++     +  K  A K G+ KS   H  R   AT   
Sbjct: 197 VRVHTPVKMGEEDIVFLNRRGNRLSRVYVFMMIKELAEKIGLKKSISPHTFRHSFATHLI 256

Query: 299 DAGATAHELMATYGWKTVDQAETYTK 324
           + GA    +    G +++   E YT 
Sbjct: 257 EGGADLRAVQEMLGHESITTTEIYTH 282


>gi|253997885|ref|YP_003049948.1| tyrosine recombinase XerC [Methylovorus sp. SIP3-4]
 gi|253984564|gb|ACT49421.1| tyrosine recombinase XerC [Methylovorus sp. SIP3-4]
          Length = 292

 Score =  132 bits (331), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 44/270 (16%), Positives = 95/270 (35%), Gaps = 18/270 (6%)

Query: 73  WLISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR---SGVESRKH 128
             + +Y    +H   L+  +R +++     ++  +G+   + +T  HIR   + +  R  
Sbjct: 3   DYLVQYLDHLSHERRLSPLTRENYQRDLRVLLELNGEVPLQNMTGTHIRRHVATLHGRNL 62

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
              S  + L++ R  F++ +++   + NPC  +  PK         + +   Q  S   E
Sbjct: 63  GGRSIARMLSAWRGFFEFLIQRHGFSANPCQGIRAPKSPKSLPHALSPDQAVQLVSIDDE 122

Query: 189 GS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-ELPDGFMKL 244
            +   +     E    SGLR ++     +  L     +I     G    +  +    M  
Sbjct: 123 DTLAQRDHAMLELFYSSGLRLAELVNLDLDALNLGEGTITVTGKGNKTRIVPVGQHAMNA 182

Query: 245 LAM-------TPIGK-ETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSA 294
           L          PI      F++   ++++        +  A + G+N     H +R   A
Sbjct: 183 LQAWLAIRSGLPIQDTSALFLSRLGKRLSRRAVQYRLQQWAIRQGINIRVHPHMLRHSFA 242

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324
           +    +      +    G   +   + YT 
Sbjct: 243 SHVLQSSGDLRAVQEMLGHANISTTQVYTH 272


>gi|270308039|ref|YP_003330097.1| site-specific recombinase [Dehalococcoides sp. VS]
 gi|270153931|gb|ACZ61769.1| site-specific recombinase [Dehalococcoides sp. VS]
          Length = 307

 Score =  132 bits (331), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 40/264 (15%), Positives = 92/264 (34%), Gaps = 25/264 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE------SRKHTPSSAIQFLT 138
            +++  +  ++ +     +    +               +      ++     S  + L+
Sbjct: 16  KNVSAYTLRNYRTDLIGFVNYLIEKKVSSFDRVDRYILRDYMSSLIAKGIVKGSIARKLS 75

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194
           ++R  +++ +R+  +  NP L+   P+         T  ++ +          +G + + 
Sbjct: 76  AVRSFYRYLMREGLIQKNPTLNASSPRLDKRLPEFLTTAEVSKLLRMPDSSTPQGLRDKA 135

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL---------- 244
             E L  SGLR S+  +  +++L  +   I+    G+   + +  G   +          
Sbjct: 136 FMELLYASGLRVSELVKLDIENLDLHSHQIRVWGKGSKERI-VLMGLPAIQSIQTYLNLG 194

Query: 245 --LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADA 300
             L          F+N +  +++A  F       A +AG+ K    H +R   AT   D 
Sbjct: 195 RPLLKGKRNTPALFLNPNGGRLSARSFQERLDKLAHQAGIEKHVHPHMLRHTFATHLLDG 254

Query: 301 GATAHELMATYGWKTVDQAETYTK 324
           GA    +    G   +   + YT 
Sbjct: 255 GADLRVVQELLGHSNLSTTQIYTH 278


>gi|289663723|ref|ZP_06485304.1| site-specific tyrosine recombinase XerD [Xanthomonas campestris pv.
           vasculorum NCPPB702]
 gi|289668605|ref|ZP_06489680.1| site-specific tyrosine recombinase XerD [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 323

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 46/273 (16%), Positives = 91/273 (33%), Gaps = 29/273 (10%)

Query: 85  GSLAVNSRISFESYFDQIIR-----KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
             +A  +  S+    + + R       G     +              ++P S  + L++
Sbjct: 38  QGVARQTLESYRRDLEGLARWRAGAGGGLLGIDRAALFDYLRLRAKANYSPRSTARLLST 97

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195
           +R  +   +R    + +P   ++ P+      +  T+  ++   +        G + R  
Sbjct: 98  LRAFYGLCLRDGMRSDDPTALIDPPQLPRSLPKALTESQIEALLAAPEVDTPAGLRDRAM 157

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-ITVELPDGFMKLLAMTPIGKET 254
            E +  +GLR S+        +      ++    G+    V L +     L     G   
Sbjct: 158 LELMYAAGLRVSELVNLPAVGVNLRQGVLRVTGKGSKDRLVPLGEESQHWLERYLRGARP 217

Query: 255 F----------------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSAT 295
                            FI+  +Q ++  QF    K  A  AG++    S HG+R   AT
Sbjct: 218 LLAANKPVAAVDGQVPLFIDAARQPLSRQQFWALVKRYAAVAGIDPATVSPHGLRHSFAT 277

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADR 328
              + GA    L    G  ++   + YT  A +
Sbjct: 278 HLLNHGADLRALQMLLGHSSLSTTQIYTLVARQ 310


>gi|312795648|ref|YP_004028570.1| hypothetical protein RBRH_01051 [Burkholderia rhizoxinica HKI 454]
 gi|312167423|emb|CBW74426.1| unnamed protein product [Burkholderia rhizoxinica HKI 454]
          Length = 396

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 51/377 (13%), Positives = 107/377 (28%), Gaps = 54/377 (14%)

Query: 5   LRLPPFVTKERTRHGKIIYYF--RKGHGRRIRLPYPHES--TFIPAYMSALTGSTPKREY 60
            ++P  +           ++   ++   +  R           +  Y  A          
Sbjct: 33  RKIPSHLPARVYEKHGTWWFVDIKRKWHKLCRTTEGIACLYEKLAKYTRA---------- 82

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF-DYRKITTKHI 119
            +S R    T+  LI ++ +       A  +R ++      I ++ G       +    +
Sbjct: 83  SDSSRSAANTMPALIDDWVQ-KKLPDYAPKTRSNYAKMLSLIRQEFGPQWLIEDVRPADV 141

Query: 120 RSGVES-RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
              ++      P+S+ ++   + ++F  A+R+     NP   +   K K    R  T  +
Sbjct: 142 ARFLDKHFHDKPNSSNKYKALLSLIFMHAIRKGLRDRNPAREIGAAKEKKR-DRYITDAE 200

Query: 179 MQQFKS--------FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT- 229
           ++  ++          S         +    +  R  D      Q + +        KT 
Sbjct: 201 LEAIRAAIVESGKNLHSSSRSILCLIDLAYQTAQRIGDLLALNWQDVTDEGIYFHPSKTV 260

Query: 230 ---GTIITVELPDGFMKLLAMTPIGKET----FFINNDKQKMNATQFSIWFKAKATKA-- 280
              G  + +E+       L +   GK T        +   +         +K    +A  
Sbjct: 261 NSSGVRLLIEMTPELKDTLDLARGGKVTAIGPVICTHKGSRFTYIGAYSGWKRGCQRARK 320

Query: 281 -----------------GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
                             +    H +R  + T        A    A  G  T      YT
Sbjct: 321 AYEDGCNEKGIAPDPKYLIGLHFHDLRAKALTDL-KRLKGAATAQALAGHTTEGMTAHYT 379

Query: 324 KGADRIRLGIKNSRRIS 340
           K  +  R+     +R S
Sbjct: 380 KAREVERVSPVPIKRAS 396


>gi|218289606|ref|ZP_03493826.1| tyrosine recombinase XerD [Alicyclobacillus acidocaldarius LAA1]
 gi|218240256|gb|EED07439.1| tyrosine recombinase XerD [Alicyclobacillus acidocaldarius LAA1]
          Length = 294

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 46/262 (17%), Positives = 97/262 (37%), Gaps = 22/262 (8%)

Query: 85  GSLAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
             L+ N+  S+              +    D  +       S ++ R    ++  + +++
Sbjct: 16  RGLSENTATSYARDLADFSQYLACEQRTMRDADRTVVLRYLSDLKRRGMKSTTIARRMSA 75

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KSFWSEGSQPRLA 195
           +R  F++ +R+  +  +P  ++E         R  ++ED+++     +   + G + R  
Sbjct: 76  LRSFFRYLLREGILQADPTANIEVAAPDEHLPRVVSEEDVERLIGAVRRPDAMGLRDRAM 135

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLL--------- 245
            E L  +G+R S+     ++ ++     I+   K      V L +     L         
Sbjct: 136 LETLYATGVRVSELLALSLEDVELAAGFIRVFGKGKKERVVPLGEIAQDALGLYLRYGRP 195

Query: 246 -AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302
             +   G+   F+N   ++M    F    K  A +AGV+   + H +R   AT   + GA
Sbjct: 196 LLVRDRGESAVFLNRLGRRMTRQGFWNILKGYARQAGVSAEVTPHTLRHSFATHLLEGGA 255

Query: 303 TAHELMATYGWKTVDQAETYTK 324
               +    G   +   E YT 
Sbjct: 256 DLRVVQELLGHADISTTERYTH 277


>gi|311030138|ref|ZP_07708228.1| site-specific tyrosine recombinase XerC [Bacillus sp. m3-13]
          Length = 302

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 48/257 (18%), Positives = 96/257 (37%), Gaps = 23/257 (8%)

Query: 91  SRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAV 148
            +   E +FD +  ++     +      +   + +  +K+   S  +  +S+R  +K+ +
Sbjct: 29  YQKDIEDFFDFMKEEAISSINEVTHTEARMYLTRLHQKKYARKSVARKTSSLRSFYKFLL 88

Query: 149 RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFEFLLYSGL 204
           R+E V  NP  SV  PK++    +    E++ +  +        G + +   E L  +G+
Sbjct: 89  REEKVEQNPFTSVSLPKQEKRLPQFLYSEELDKLFAVSDLETPLGQRNQAILELLYATGI 148

Query: 205 RCSDSCRAGVQHLQNNIFSIKTQKTGTI-------------ITVELPDGFMKLL--AMTP 249
           R S+ C   +  +   + +I     G               I + L DG   LL    TP
Sbjct: 149 RISECCHIQIHDIDFQVGTILVTGKGNKQRYIPFGSFAQDAIKIYLEDGRKSLLEKQKTP 208

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKA--GVNKSAHGVRKFSATISADAGATAHEL 307
              +  F+N     +      +       +A   ++ S H +R   AT   + GA    +
Sbjct: 209 NSTKHLFLNFRGGALTPRGVRLILNDMVQQACSTLHISPHMLRHTFATHMLNEGADLRVV 268

Query: 308 MATYGWKTVDQAETYTK 324
               G  ++   + YT 
Sbjct: 269 QELLGHASLSSTQIYTH 285


>gi|238028460|ref|YP_002912691.1| site-specific tyrosine recombinase XerD [Burkholderia glumae BGR1]
 gi|237877654|gb|ACR29987.1| Tyrosine recombinase XerD [Burkholderia glumae BGR1]
          Length = 341

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 49/316 (15%), Positives = 104/316 (32%), Gaps = 26/316 (8%)

Query: 38  PHESTFIPAYMSALTGSTPKREYINSPRKKPTT-LKWLISEYRKSAHWGSLAVNSRISFE 96
           P  +       +A + +  +    +  R+   T ++              L+ N+  ++ 
Sbjct: 19  PRGAAGRKPRTAAGSANGAEPLGASPEREASRTSIELFCDALWLE---HGLSQNTLDAYR 75

Query: 97  SYFDQIIRKSGDFDYRKITTKH---IRSGVESRKH-TPSSAIQFLTSMRVLFKWAVRQEY 152
                  +         I       +   + +R     +S+ + L+  R  + WA+R+  
Sbjct: 76  RDLTLFAQWLATVHGASIDAVDEAMLTGYIAARSDGKATSSNRRLSVFRRYYGWALREHR 135

Query: 153 VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSD 208
            A++P L +   K+        ++  ++   +    G+    + R   E +  SGLR S+
Sbjct: 136 AALDPTLRLLSAKQPARFPATLSEAQVEALLAAPEVGTALGLRDRTMLELMYASGLRVSE 195

Query: 209 SCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLLAMT--PIGKETFFI 257
                   +  N   ++    G+   +          +     +           +  F+
Sbjct: 196 LVMLKTVEVGLNDGVVRVMGKGSKERLVPFGEVAHGWIERYLREARPALLGARTSDALFV 255

Query: 258 NNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKT 315
               + M   QF    K  A +A +  + S H +R   AT   + GA    +    G   
Sbjct: 256 TARGEGMTRQQFWNIIKRHAMRAEIRAHLSPHTLRHAFATHLLNHGADLRVVQMLLGHSD 315

Query: 316 VDQAETYTKGADRIRL 331
           +   + YT  A R RL
Sbjct: 316 ISTTQIYTHVA-RERL 330


>gi|328952112|ref|YP_004369446.1| Tyrosine recombinase xerC [Desulfobacca acetoxidans DSM 11109]
 gi|328452436|gb|AEB08265.1| Tyrosine recombinase xerC [Desulfobacca acetoxidans DSM 11109]
          Length = 295

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 45/277 (16%), Positives = 93/277 (33%), Gaps = 24/277 (8%)

Query: 72  KWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIR---SGVE 124
              + ++ +       LA  +  ++      +       G   + + T + ++   + +E
Sbjct: 2   DAAVEQFFQHLIVERGLAPLTVEAYAHDLAGLRSFLTGLGRSRWDETTLEDLQFFLNHLE 61

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
            +   P S  + L+++R L+++ +RQ   + NP   ++ PK           E++ +  +
Sbjct: 62  EQGVGPRSRARKLSAVRQLYRFLLRQGTTSHNPLEWLDSPKLPKGLPTVLGLEEVDRLLA 121

Query: 185 F----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPD 239
                   G +     E L  +G+R S+        L       +   K G    + +  
Sbjct: 122 APDPTTPLGQRDDAMLELLYATGMRVSELVGLTASQLDLRRGVVLVRGKGGKERLIPMVM 181

Query: 240 GFMKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287
             ++ L +                  F+N     +    F    K  A + G+ K  S H
Sbjct: 182 RAVEKLQLYLQYVRPVLLKRQKTPELFLNRSGTGLTRQGFWKILKGYARQTGLPKDLSPH 241

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            +R   AT     GA    L    G   +   + YT 
Sbjct: 242 TLRHSFATHLLWQGADLRALQLLLGHADISTTQIYTH 278


>gi|281357729|ref|ZP_06244215.1| tyrosine recombinase XerD [Victivallis vadensis ATCC BAA-548]
 gi|281315676|gb|EFA99703.1| tyrosine recombinase XerD [Victivallis vadensis ATCC BAA-548]
          Length = 299

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 46/291 (15%), Positives = 100/291 (34%), Gaps = 29/291 (9%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSGVESRKHT 129
            L  +Y  +     L+ N+  ++ S  ++      + G  ++ ++  + I   +++ +  
Sbjct: 7   NLFIDYLVTER--GLSSNTTAAYRSDLEEFRDWLTERGFKEWSQVDREAILDYLDAERDL 64

Query: 130 PSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
                   + L ++++L ++   +  +  +    ++ PK         ++ ++  F   +
Sbjct: 65  GRETATLARRLVAVKMLSRFLTEEGILKKDVTAVMDSPKLWRILPDFLSEAEVDAFLKAF 124

Query: 187 SE------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVEL-- 237
                     + R   E L  SGLR S+  R  +  +  +N       K      V +  
Sbjct: 125 PASVKEPFEMRNRAILEVLYSSGLRVSELARLPLTAVDFDNELLRVVGKGSKTRIVPIGK 184

Query: 238 ---------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286
                          LLA         F++   + +N        K  A +AG++K    
Sbjct: 185 VALRTLRRYLADVRPLLAEKNPRSPYVFLSKSGRPLNREWIWNVVKVAAARAGIHKNIHP 244

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
           H +R   A+     GA    +    G   +   E YT   D  RL   + +
Sbjct: 245 HTLRHSFASHLLAHGADLRVIQEMLGHADISTTEIYTH-IDSNRLAAIHHK 294


>gi|229496921|ref|ZP_04390628.1| tyrosine recombinase XerD [Porphyromonas endodontalis ATCC 35406]
 gi|229316168|gb|EEN82094.1| tyrosine recombinase XerD [Porphyromonas endodontalis ATCC 35406]
          Length = 313

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 45/274 (16%), Positives = 96/274 (35%), Gaps = 23/274 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESR---K 127
           L   +++      +L+ NS  ++     ++I  + D      ++  +H+ + V S     
Sbjct: 20  LAEAFKRHLQLEQALSPNSISAYLMDLGKLIAYAEDCALPLDQVEYEHLETFVASLYDCG 79

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
               S  + +  ++  +++    +Y+  +P   +E PK +      ++ E++        
Sbjct: 80  IAARSIARIIAGVKSFYRFLYVDQYIQKDPTELLESPKLELHLPTVFSVEEIDHILEAID 139

Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFM 242
               +  + R   E L   GLR S+ C   +  +      +     G     V +    +
Sbjct: 140 YSKNDALRNRAIIEVLYSCGLRVSELCHLKLGDVHPEEAFVHVYGKGCKERLVPISPVAL 199

Query: 243 KLLA----------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290
             LA               ++  F++   + +         +A +  AG+ K  S H  R
Sbjct: 200 DALAQYLASPHRPVPKAGQEDYIFLSRLGKAIARNSVFDLIRALSEAAGITKTVSPHTFR 259

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              AT   D GA    +    G + +   E YT 
Sbjct: 260 HSFATHLLDGGANLQAIRLMLGHEDISTTEIYTH 293


>gi|163738156|ref|ZP_02145572.1| phage integrase [Phaeobacter gallaeciensis BS107]
 gi|161388772|gb|EDQ13125.1| phage integrase [Phaeobacter gallaeciensis BS107]
          Length = 392

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 59/345 (17%), Positives = 109/345 (31%), Gaps = 23/345 (6%)

Query: 25  FRKGHGRR---IRLPYPHESTFIPAYMSALTGSTPKREYIN---SPRKKPTTLKWLISEY 78
           +RKG   R   +                 + G   K E      S  +K  T+  L   +
Sbjct: 45  YRKGGRTRRVSVGRHGKITVEEARKLAKEIMGQVAKGENPAEELSQHRKTPTVAALCERF 104

Query: 79  RKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFL 137
            ++        +++  +    D  I+   G F    +  + I       +  P  A + L
Sbjct: 105 FEAHAKERCKPSTQKEYRRAIDLFIVPAIGSFKVVDVERRDIAELHHRFRDKPYQANRTL 164

Query: 138 TSMRVLFKWAVRQEYVAI--NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR-- 193
             +  +F  A          NPC  V +  R+ +  R   + ++Q+     SE  +    
Sbjct: 165 GVLSKMFNLAEIWGLRPDGSNPCRHVPK-YREIKRERYLNQNELQRLGHVLSEVEREGTE 223

Query: 194 -----LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248
                 AF  L+ +G R  +       ++ +    +   KTG    + LP     +L   
Sbjct: 224 TPFVVAAFRLLILTGCRLGEIQTLKWDYITDTGMELPDTKTGAR-RIPLPQPARDVLTHL 282

Query: 249 PI--GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHE 306
           P   G           +        W + +A         H +R   A+ +  +G     
Sbjct: 283 PRTPGNPYVIEGKLAGQYATDLQHPWRRIRARAGLAGVRIHDLRHTYASNAVSSGMPIQM 342

Query: 307 LMATYGWKTVDQAETYTKGAD--RIRLGIKNSRRISSVV-DSDDP 348
           +    G   +     Y   AD    +   +N+ R+ S+V D   P
Sbjct: 343 VGRLLGHSQIQTTMRYAHLADDPVRQAAEENAARLGSIVGDLRRP 387


>gi|326316149|ref|YP_004233821.1| tyrosine recombinase XerD [Acidovorax avenae subsp. avenae ATCC
           19860]
 gi|323372985|gb|ADX45254.1| tyrosine recombinase XerD [Acidovorax avenae subsp. avenae ATCC
           19860]
          Length = 303

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 45/278 (16%), Positives = 91/278 (32%), Gaps = 29/278 (10%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDFD------YRKITTKHIRSGVESRKH--TPSSAIQFL 137
            L+ N+  ++        +  G                H+++   +R      +SA + L
Sbjct: 23  GLSRNTLAAYRRDLALYAQWLGQHAPDTAGALDATAEHHLKAYFSARHAETRATSANRRL 82

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK----SFWSEGSQPR 193
           T +R  F+WA+R+  +  +P + ++  ++     +  +   ++       +    G + R
Sbjct: 83  TVLRRYFQWALRERRIGADPTVRLQAARQPLRVPKTLSAAQVEALLQAPDTSTPLGLRDR 142

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-------------ELPDG 240
              E +  SGLR ++       H   +   ++    G+   +              L + 
Sbjct: 143 AMLELMYASGLRVTELVTLKTYHASLSEGVLRVMGKGSKERLVPFGEVAAQWMQRYLNEA 202

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISA 298
              +LA         F+      M    F +  K  A  AG+    S H +R   AT   
Sbjct: 203 RADILAGQQTDD--LFVTRRGAGMTRAMFWVVVKKHAQAAGITVPLSPHTLRHAFATHLL 260

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
           + GA    +    G   +     YT  A      +   
Sbjct: 261 NHGADLRVVQLLLGHADISTTTIYTHVARERLKALHAQ 298


>gi|160938560|ref|ZP_02085913.1| hypothetical protein CLOBOL_03456 [Clostridium bolteae ATCC
           BAA-613]
 gi|158438489|gb|EDP16247.1| hypothetical protein CLOBOL_03456 [Clostridium bolteae ATCC
           BAA-613]
          Length = 331

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 41/254 (16%), Positives = 90/254 (35%), Gaps = 12/254 (4%)

Query: 82  AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----SRKHTPSSAIQFL 137
             + + + ++   ++ +   ++   G    ++IT + +   +      R+ + S+     
Sbjct: 63  MRFENYSASTVNQYQRFLTDLLVYVG-KPVQEITGEDVVECLNYYEQVRQISTSTKDHKR 121

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE 197
                 F +   + Y+  NP  +V+  K   E     T  ++++ +       +     E
Sbjct: 122 RIASSFFAFLHDRGYIRKNPMATVDPIKYVAEIREALTSREVEKLRIACGGNVRDNAVLE 181

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKE--T 254
             L +G R S+     V+ +   +  +K   K      V   D  M+ L     G+    
Sbjct: 182 LFLATGCRVSEVVGMHVEDIDMQVGCVKVLGKGQKERIVFFGDRAMEYLERYLDGRRAGA 241

Query: 255 FFINND--KQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMAT 310
             +++    Q +         +  A +AG+ K    H +R   AT + + G     L   
Sbjct: 242 VILSSRAPHQGLKKNALENIIRRIANQAGLGKRVFPHLLRHTFATRALNKGMPLPTLCDL 301

Query: 311 YGWKTVDQAETYTK 324
            G  +V+    Y K
Sbjct: 302 MGHASVETTRIYAK 315


>gi|13488397|ref|NP_109404.1| hypothetical protein mlr9537 [Mesorhizobium loti MAFF303099]
 gi|14028151|dbj|BAB54743.1| mlr9537 [Mesorhizobium loti MAFF303099]
          Length = 183

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 41/137 (29%), Positives = 65/137 (47%), Gaps = 1/137 (0%)

Query: 212 AGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI 271
            G Q+ +    S + +KTG  + + + D    +L + P  +  F  +   +    T F  
Sbjct: 4   LGRQNFREGRISYRRRKTGGEVDLPILDELFDVLRLLPADRMLFLTHTGDRPYKPTTFGN 63

Query: 272 WFKAKATKAGVNKSA-HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
           WF  +   AG+   A HG+RK  AT  A+AGAT  E+MA  G +T D+A T  K  +R  
Sbjct: 64  WFHDQCIAAGLPHCASHGLRKAGATRLANAGATELEIMAYLGHRTPDEARTDVKKLNRKL 123

Query: 331 LGIKNSRRISSVVDSDD 347
           LG     +++S   +  
Sbjct: 124 LGDTGMEKVASKKRTRF 140


>gi|147918869|ref|YP_687405.1| integrase [uncultured methanogenic archaeon RC-I]
 gi|110622801|emb|CAJ38079.1| integrase [uncultured methanogenic archaeon RC-I]
          Length = 278

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 41/260 (15%), Positives = 92/260 (35%), Gaps = 21/260 (8%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD--YRKITTKHIRSGVESRKH-TPS 131
           I E R S+     +  +   +    ++  + +G       +       + +   KH + +
Sbjct: 14  IDEKRLSS-----SPGTIRQYGMILNRFYKYTGKQPEMVVRPEIVRYLNYLMFEKHLSKT 68

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           +    L+ ++  + + +   YV+ NP   +   K   +     T  +M       +  ++
Sbjct: 69  TVANVLSVLKSFYSFMLDNGYVSSNPTRGINNIKLDKKAPVYLTVSEMNDLLDT-AIDTR 127

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLL---AM 247
            R+    L  +G+R S+      + +  +  +IK   K      V +P+  +K +   A 
Sbjct: 128 DRIIVRLLYATGVRVSELVNIRKKDIDFDRCTIKVFGKGAKERIVLVPETVVKEMYDYAA 187

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAH 305
           +    +  F       +         K  A +A +NK  + H +R   AT     G    
Sbjct: 188 SLSNDDRLF------NLTPRTVQRDIKQLARRAKINKNVTPHKLRHSFATHMLQNGGNVV 241

Query: 306 ELMATYGWKTVDQAETYTKG 325
            +    G  +++  + YT  
Sbjct: 242 AIQKLLGHSSLNTTQIYTHY 261


>gi|323483868|ref|ZP_08089245.1| integrase/recombinase XerD [Clostridium symbiosum WAL-14163]
 gi|323692871|ref|ZP_08107096.1| integrase/recombinase XerD [Clostridium symbiosum WAL-14673]
 gi|323402822|gb|EGA95143.1| integrase/recombinase XerD [Clostridium symbiosum WAL-14163]
 gi|323503046|gb|EGB18883.1| integrase/recombinase XerD [Clostridium symbiosum WAL-14673]
          Length = 282

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 47/267 (17%), Positives = 91/267 (34%), Gaps = 22/267 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDF------DYRKITTKHIRSGVESRKHTPSSAIQFLT 138
             ++ N+ +S+     Q+    G+          K +       +E      ++  + L 
Sbjct: 16  KKMSRNTVLSYHRDLLQMASYMGERGITEAGKVTKTSLTSYILFMEKEGKATTTISRMLA 75

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRL 194
           SM+  F +   +  +  NP   V  PK + +     + E++       S  S    + + 
Sbjct: 76  SMKAFFHYEFSEGKIRRNPAELVHAPKIEKKAPVILSVEEVTSLLKQPSGRSSKEIRDKA 135

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE--------LPDGFMKLLA 246
             E L  +G+R S+     +  +  NI  I  +  G   T+         + D      +
Sbjct: 136 MLELLYATGIRVSELTSLKLTDINMNIGFITCRDGGKDRTIPFSRVAKGAMEDYIENARS 195

Query: 247 MTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGA 302
                KE+   F+N +  +M+   F    K    KAG+  + + H +R   A      GA
Sbjct: 196 ELTRKKESDWLFVNCNGGQMSRQGFWKIIKFYGDKAGIESDITPHTLRHSFAAHLIGGGA 255

Query: 303 TAHELMATYGWKTVDQAETYTKGADRI 329
               +    G   V   + Y     + 
Sbjct: 256 DMKAVQVILGHSDVATTQMYAAYVGKR 282


>gi|222032710|emb|CAP75449.1| integrase [Escherichia coli LF82]
 gi|312945501|gb|ADR26328.1| putative integrase [Escherichia coli O83:H1 str. NRG 857C]
          Length = 357

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 61/341 (17%), Positives = 112/341 (32%), Gaps = 23/341 (6%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHE---STFIPAYMSALTGSTPKREYINS 63
           LPP +     R+     Y     G+   L        S  I A +  L+ +  +      
Sbjct: 12  LPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAVSEAIQANIELLSENRRESLIDRI 68

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
                 TL   +  Y        +   + + + S    I RK  D     I+TK + + +
Sbjct: 69  KGADAITLHAWLDRYETILSERGIRPKTLLDYASKIRVIRRKLPDKPLTDISTKEVAAML 128

Query: 124 ESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
            +   +   +SA    +++  +F+ A+ + +V  NP  +    K +    R    E +  
Sbjct: 129 NTYVAEGKAASAKLIRSTLVDVFREAIAEGHVETNPVTATRTAKSEVRRSRLTANEYVAI 188

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE----- 236
           + +        RLA +  + +G R  D CR     + +N   I+  KTGT + +      
Sbjct: 189 YHAAEPLPIWLRLAMDLAVVTGQRVGDLCRMKWSDINDNHLHIEQGKTGTKLAIPLMLTI 248

Query: 237 --LPDGFMKLL--AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NKSAH 287
             L       L       G ET   +   + ++    S +F      +G+       + H
Sbjct: 249 DALNISLADTLQKCREASGSETIIASTHHEPLSPKTVSKYFTKARNVSGLSFDGDPPTFH 308

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
            +R   +                 G K+   A  Y     R
Sbjct: 309 ELR-SLSARLYRNQIGDKFAQRLLGHKSDSMAARYRDSRGR 348


>gi|332111079|gb|EGJ11111.1| tyrosine recombinase XerD subunit [Rubrivivax benzoatilyticus JA2]
          Length = 310

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 48/274 (17%), Positives = 92/274 (33%), Gaps = 23/274 (8%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE-----SRKHTPSSAIQFLTSM 140
            LA  +  ++                +++        +            ++A + LT  
Sbjct: 33  GLAPLTLAAYRRDLTLYAGWLARRHAKRLDDSREADLLAYIAERHTATRATTANRRLTVF 92

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAF 196
           +  F+WA+R+  VA +P L ++  ++     +  ++  ++   +      + G + R   
Sbjct: 93  KRYFRWALREHLVAADPTLRLQSARQPLRVPKSLSERQVEALLAAPETDTALGLRDRAML 152

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-----ELPDGFMKLLAMTPIG 251
           E +  SGLR S+       HL      ++    G+   +     E      + L      
Sbjct: 153 ELMYGSGLRVSELVGLKSVHLGLAEGVLRVVGKGSKERIVPFGEEAHGWLQRYLGEARAA 212

Query: 252 ------KETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGAT 303
                  +  F+      M    F +  K  A  AG+    S H +R   AT   + GA 
Sbjct: 213 ILGGQASDALFVTARGGAMTRQAFWLLVKKYARAAGILVPLSPHTLRHAFATHLLNHGAD 272

Query: 304 AHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
              +    G   +     YT  A R RL   ++R
Sbjct: 273 LRAVQMLLGHADIGTTTIYTHVA-RERLRQLHAR 305


>gi|9634144|ref|NP_037686.1| integrase [Enterobacteria phage HK022]
 gi|138560|sp|P16407|VINT_BPHK0 RecName: Full=Integrase
 gi|6863136|gb|AAF30377.1|AF069308_25 integrase [Enterobacteria phage HK022]
 gi|15760|emb|CAA36221.1| unnamed protein product [Enterobacteria phage HK022]
 gi|16209083|gb|AAL09856.1| integrase [CRIM helper plasmid pAH69]
 gi|16209095|gb|AAL09864.1| integrase [CRIM helper plasmid pAH83]
          Length = 357

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 59/341 (17%), Positives = 109/341 (31%), Gaps = 23/341 (6%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMS---ALTGSTPKREYINS 63
           LPP +     R+     Y     G+   L          A  +    L+G+  +      
Sbjct: 12  LPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELLSGNRRESLIDRI 68

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
                 TL   +  Y        +   + + + S    I RK  D     I+TK + + +
Sbjct: 69  KGADAITLHAWLDRYETILSERGIRPKTLLDYASKIRAIRRKLPDKPLADISTKEVAAML 128

Query: 124 ESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
            +   +   +SA    +++  +F+ A+ + +VA NP  +    K +    R    E +  
Sbjct: 129 NTYVAEGKSASAKLIRSTLVDVFREAIAEGHVATNPVTATRTAKSEVRRSRLTANEYVAI 188

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP--- 238
           + +        RLA +  + +G R  D CR     + +N   I+  KTG  + + L    
Sbjct: 189 YHAAEPLPIWLRLAMDLAVVTGQRVGDLCRMKWSDINDNHLHIEQSKTGAKLAIPLTLTI 248

Query: 239 ----DGFMKLL--AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NKSAH 287
                     L         ET   +     ++    S +F      +G+       + H
Sbjct: 249 DALNISLADTLQQCREASSSETIIASKHHDPLSPKTVSKYFTKARNASGLSFDGNPPTFH 308

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
            +R   +                 G K+   A  Y     R
Sbjct: 309 ELR-SLSARLYRNQIGDKFAQRLLGHKSDSMAARYRDSRGR 348


>gi|294054307|ref|YP_003547965.1| tyrosine recombinase XerD [Coraliomargarita akajimensis DSM 45221]
 gi|293613640|gb|ADE53795.1| tyrosine recombinase XerD [Coraliomargarita akajimensis DSM 45221]
          Length = 312

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 51/274 (18%), Positives = 104/274 (37%), Gaps = 23/274 (8%)

Query: 85  GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVESRK--HTPSSAIQFLTS 139
             LA N+  S+     Q    + ++G   ++ +  + + +        +  SS  + L++
Sbjct: 28  RGLATNTVQSYAQDLCQFASFLHRAGIGSWQAVEAEQVSAWTAELAVGYARSSQARKLSA 87

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195
           +R+  +  VR++  A +    V  PK++       ++E++    +        G + R  
Sbjct: 88  VRMFARHLVREQIRADDFTELVSAPKQRRSLPEVLSREEVDLLLNAPSMSTPHGLRDRAI 147

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM-TPIGKE 253
            E    SGLR S+ C   +Q +  +   ++   K      V +    +  L     +G+ 
Sbjct: 148 LELFYSSGLRVSELCGLPLQSVNLDEGFLRVYGKGSKERVVPIGAAAVAALKDYLAVGRS 207

Query: 254 TF---------FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302
            F         F++   Q ++     +  K  ATK G+ K    H +R   AT   + GA
Sbjct: 208 QFVQAKTGSEVFLSQRGQAISRKMVWVMIKQHATKVGIKKPIKPHLLRHSFATHLLEGGA 267

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
               +    G   +   + YT      RL  +++
Sbjct: 268 DLRAIQEMLGHADISTTQIYT-AVQANRLADEHA 300


>gi|325860247|ref|ZP_08173372.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
 gi|325482334|gb|EGC85342.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
          Length = 407

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 59/360 (16%), Positives = 123/360 (34%), Gaps = 50/360 (13%)

Query: 16  TRHGKIIYYFRKG--HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
             +GK + Y         ++ + +      +  Y+ A   +  +R+      K    ++ 
Sbjct: 41  DENGKPVLYETGKMMGKPKVHIKHNRRKENLQLYLIAKPRTPAERQQNKETLKLAAKIRA 100

Query: 74  LISE--------YR----KSAHWGSLAVN-----SRISFE-------SYFDQIIRKSGDF 109
              +        YR    ++ ++           ++            + D +  +   +
Sbjct: 101 EREQQFKESMLGYRLKKDRNVNFLDYYQAYIDSYTKKDLRMIKIALNRFKDFLKEQYPVY 160

Query: 110 DY----RKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163
           ++      IT   +   VE  +       A       + + ++A+  E +  +PC  V  
Sbjct: 161 EFGIKPDLITKDMMEQFVEYLQSRSVGEGAKSIYQRFKKVVRYAIDHEVMLKDPCKGV-V 219

Query: 164 PKRKTEGIR--PWTKEDMQQFKSFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQ- 218
            K   + +R    + +++Q       +   P  R AF   LY GLR  D      +++  
Sbjct: 220 CKVDEQILRKDVLSMDEIQSLIQCHYDNENPNVRRAFILCLYCGLRFCDVKDLTYKNVDY 279

Query: 219 -NNIFSIKTQKTG-----TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW 272
            N +   +  KT      + + + L DG + L+   P    +   N      +    S  
Sbjct: 280 TNRLLKFEQNKTKGHSAHSGVIIPLNDGLLSLIGEAPEDLNSSIFNLP----SYESCSKS 335

Query: 273 FKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
            K    +AG+NK  S H  R   A    + GA    + +  G   +   E YT+  D+++
Sbjct: 336 VKRWIKRAGINKHISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVDKLK 395


>gi|89901430|ref|YP_523901.1| tyrosine recombinase XerD [Rhodoferax ferrireducens T118]
 gi|89346167|gb|ABD70370.1| tyrosine recombinase XerD subunit [Rhodoferax ferrireducens T118]
          Length = 306

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 47/294 (15%), Positives = 103/294 (35%), Gaps = 29/294 (9%)

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFD----QIIRKSGDFDYRKITTKHIRSGVE 124
            ++   I           L+ N+  ++          +  +            +     +
Sbjct: 12  ASIDAFIDALWLE---EGLSKNTLAAYRRDLTLYGAWLQPQHKALPATLEHDLNGYFAAQ 68

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
                 S+A + LT  +  F+WA+R+  ++ +P L ++  K+     +  ++  ++   +
Sbjct: 69  HSATKASTANRRLTVFKRYFRWALREHLISADPTLKLQAAKQALRVPKTLSEFQVEALLA 128

Query: 185 F----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTII----- 233
                   G + R   E +  SGLR S+     V ++   +N+  +  +     +     
Sbjct: 129 APDEQTPLGVRDRTMLELMYASGLRVSELVTLKVFNVSLSDNVLRVFGKGNKERLVPFGE 188

Query: 234 --TVELPDGFMKLLAMTPIGKET--FFINNDK----QKMNATQFSIWFKAKATKAGV--N 283
             ++ +     +       GK+T   F+ +        M+   F +  K  A  AG+   
Sbjct: 189 VASLWIKRYLAQARPELLAGKQTEDLFVTHRGATPGTAMSRVMFWMIVKKYALSAGITAP 248

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
            S H +R   AT   + G     +    G   +     YT  A R RL + +++
Sbjct: 249 LSPHTLRHAFATHLLNHGVDLRAVQMLLGHVDISTTTIYTHVA-RERLKVLHAQ 301


>gi|161485706|ref|NP_643858.2| site-specific tyrosine recombinase XerD [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 323

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 46/273 (16%), Positives = 91/273 (33%), Gaps = 29/273 (10%)

Query: 85  GSLAVNSRISFESYFDQIIR-----KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
             +A  +  S+    + + R       G     +              ++P S  + L++
Sbjct: 38  QGVARQTLESYRRDLEGLARWRDGAGGGLLGIDRAALFDYLRWRTRANYSPRSTARLLST 97

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195
           +R  +   +R    + +P   ++ P       +  T+  ++   +        G + R  
Sbjct: 98  LRAFYGLCLRDGARSDDPTALIDPPHLPRSLPKALTESQIEALLAAPDLDTPAGLRDRAM 157

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-ITVELPDGFMKLLA-------- 246
            E +  +GLR S+        +      ++    G+    V L +     L         
Sbjct: 158 LELMYAAGLRVSELVNLPAVGVNLRQGVLRVTGKGSKDRLVPLGEESQHWLERYLREARP 217

Query: 247 --------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSAT 295
                       G+   FI+  +Q ++  QF    K  A  AG++    S HG+R   AT
Sbjct: 218 LLAANKPVAAVDGQVPLFIDVSRQPLSRQQFWALVKRYAAVAGIDPATVSPHGLRHSFAT 277

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADR 328
              + GA    L    G  ++   + YT  A +
Sbjct: 278 HLLNHGADLRALQMLLGHSSLSTTQIYTLVARQ 310


>gi|302872232|ref|YP_003840868.1| tyrosine recombinase XerD [Caldicellulosiruptor obsidiansis OB47]
 gi|302575091|gb|ADL42882.1| tyrosine recombinase XerD [Caldicellulosiruptor obsidiansis OB47]
          Length = 291

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 41/280 (14%), Positives = 100/280 (35%), Gaps = 25/280 (8%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK-----HIRSGVES 125
           ++      +K   +   + N+  S+     + I    +   +   T           ++ 
Sbjct: 4   IEAFCDHLQKQNRF---SQNTISSYLRDAKKYIEFLDNMKIKLENTSQATLIAYIISMQK 60

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
              + S+  + + S++V + +   Q+ + I   + +E PK +    +  T++++++  S 
Sbjct: 61  SGKSNSTIARAIVSLKVFYDFLKTQKIIDIG-KIEIEPPKLEKNPPQILTRDEVEKLLSC 119

Query: 186 WSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241
             E    G + +   E L  +G+R S+     +  +      I  +       + +    
Sbjct: 120 PKEEDIKGIRDKAMLEVLYATGIRVSELINLNLDDINLEHGYIICKNKKRDRVIPIGSYA 179

Query: 242 MKLLA----------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289
           +  +                +E  F+N + ++M    F    K  A  AG++K  + H +
Sbjct: 180 ISAVEKYLRHSRPYLAKSKNEEALFLNFNGERMTRQGFWKIVKFYAQSAGIDKEITPHVL 239

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           R   A    + GA    +    G   +   + Y + A+  
Sbjct: 240 RHSFAIHLIENGADVRAVQQMLGHADISTTQRYLQVANVK 279


>gi|149927220|ref|ZP_01915477.1| Tyrosine recombinase XerD [Limnobacter sp. MED105]
 gi|149824159|gb|EDM83380.1| Tyrosine recombinase XerD [Limnobacter sp. MED105]
          Length = 299

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 55/278 (19%), Positives = 103/278 (37%), Gaps = 24/278 (8%)

Query: 72  KWLISEYRKSAHWGS--LAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRS-GVES 125
             LI E+  +  W    LA  +  ++     Q+   + +    +  + + +HIR+   + 
Sbjct: 5   ADLIDEFCTTL-WLEEGLAKATLQAYRGDLQQLGNWLDEHFAENLLQASNEHIRNHVHDL 63

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
            +  PSS  + L+S +  + W         NPC  ++  KR     +  +++ +    S 
Sbjct: 64  LELKPSSLNRKLSSYKRFYLWLNTTRQREDNPCSQLQSAKRGLRIPKTLSEKQVLDLLSA 123

Query: 186 WS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240
                  G + +   EF+  SGLR S+     ++ +  N+ ++K   K      V + + 
Sbjct: 124 PDLSNAAGQRDKAMLEFMYASGLRVSELVNMPLRAVDLNVGAVKVLGKGKKERLVPMGEP 183

Query: 241 --------FMKLLAMTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHG 288
                     +       GK +   F+ +    M    F    K  A  AG+N   S H 
Sbjct: 184 ARLAIQLYLQQARGELLKGKTSDFLFVTHFGTPMTRQGFWKNTKRLALIAGINTTVSPHV 243

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           +R   AT   + GA    +    G   +   + YT  A
Sbjct: 244 LRHAFATHLINHGADLRVVQLLLGHADIGTTQIYTHVA 281


>gi|110598394|ref|ZP_01386667.1| Tyrosine recombinase XerD [Chlorobium ferrooxidans DSM 13031]
 gi|110340003|gb|EAT58505.1| Tyrosine recombinase XerD [Chlorobium ferrooxidans DSM 13031]
          Length = 304

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 44/265 (16%), Positives = 94/265 (35%), Gaps = 25/265 (9%)

Query: 85  GSLAVNSRISFESYFDQ--IIRKSGDFDYRKITTKHIRSGVESRKHT---PSSAIQFLTS 139
            + + N+R+S+ +  ++  +  +        IT   IR  +     T    SS  + +++
Sbjct: 23  RNFSENTRVSYRNDLERYLLFMQQNAISLESITPNQIREFITELYLTGLEASSLARNISA 82

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-------SEGSQP 192
           +R L K+ + +   +INP  ++ +PK+        T ++  +                + 
Sbjct: 83  IRSLHKFLLSERTTSINPAENLHQPKQARYLPTVLTIDETLRLLEAPLLQNPQSKYFLRD 142

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPI- 250
           +   E L  +G+R S+      Q+L      ++   K      V +     + +      
Sbjct: 143 KTIVELLYATGVRVSELISIQQQNLYLEAGFVRIFGKGSKERLVPVGSAATEWITRYQRE 202

Query: 251 ---------GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
                      +  F+N   + ++        +  A  AG+ K  S H  R   AT   +
Sbjct: 203 LRQGLSGRNSGDYLFLNARGKPLSRMAIFSMVRQYAIIAGIEKQISPHTFRHTFATHLLE 262

Query: 300 AGATAHELMATYGWKTVDQAETYTK 324
            GA    +    G  ++   + YT 
Sbjct: 263 GGADLRAVQEMLGHSSISTTQIYTH 287


>gi|300773591|ref|ZP_07083460.1| tyrosine recombinase XerD [Sphingobacterium spiritivorum ATCC
           33861]
 gi|300759762|gb|EFK56589.1| tyrosine recombinase XerD [Sphingobacterium spiritivorum ATCC
           33861]
          Length = 297

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 46/266 (17%), Positives = 97/266 (36%), Gaps = 29/266 (10%)

Query: 85  GSLAVNSRISFESYFDQIIR-----KSGDFDYRKITTKHIRS---GVESRKHTPSSAIQF 136
             LA     S E+Y + I +      +      +++  H++     + +   +P +  + 
Sbjct: 18  RGLAP---HSIEAYLNDISKLEVFCTNQQLTVNQLSVDHLQEFLVWLNTFNISPYTQSRL 74

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQP 192
           ++ ++  F +   +  +  NP   ++ P+   +       E++ Q           G + 
Sbjct: 75  ISGLKAFFGYLQLEGLITKNPAELIQSPRLSRKIPVVLNIEEIDQLIGALDLSTTDGMRN 134

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFMKLLAM---- 247
           +   E L   GLR S+     + +L  +I  IK +  G     + +    +K L +    
Sbjct: 135 KAILEILYGCGLRVSELVNLRISNLFLHIDFIKVEGKGNKERLIPIGQHAIKYLNIYLNE 194

Query: 248 ----TPIGK---ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISA 298
                P+     +  F+N     ++     +  K  A K G+ K  S H  R   A+   
Sbjct: 195 IRVQQPVKAGFEDYVFLNKRGTSLSRVMIFLIIKDLAAKTGLQKEISPHTFRHSFASHLV 254

Query: 299 DAGATAHELMATYGWKTVDQAETYTK 324
           + GA    +    G +++   E YT 
Sbjct: 255 EGGADLRAVQDMLGHESITTTEIYTH 280


>gi|308271884|emb|CBX28492.1| hypothetical protein N47_G38160 [uncultured Desulfobacterium sp.]
          Length = 311

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 46/252 (18%), Positives = 101/252 (40%), Gaps = 13/252 (5%)

Query: 90  NSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVR 149
                 E+    +++  G  +   I  + +   + S+K +P+ A + L  ++ LF+ AV 
Sbjct: 61  RYYKENENLIKGLVKIWGGKNV--INREDVEVYINSKK-SPTQANKELKMIKRLFQHAVE 117

Query: 150 QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDS 209
           ++++  NP  +++      +      +ED+ +F        + R  F  ++Y+  R  + 
Sbjct: 118 RDWLETNPAKNIKLLPVSKKRKYIPPQEDIIKFMV---SAGKDRFYFLTIVYTLARMREI 174

Query: 210 CRAGVQHLQNNIFSIKTQKTG----TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN 265
                + + ++   +KT+K      T   + + +    +L   P   E  F  N+ +   
Sbjct: 175 NYLKWEDVYSDYLILKTRKARNSDLTERRIPINEILKYILEQLPKKGEYVFCQNNGKPY- 233

Query: 266 ATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
                        +AG+ + S H +R + A+  A+AGA    + A  G       +TY +
Sbjct: 234 -DCRKRLMAGICKRAGIKRFSFHSLRHYGASKLAEAGAPLTAIQAILGHSRATTTDTYLQ 292

Query: 325 GADRIRLGIKNS 336
                +  + NS
Sbjct: 293 SLGMKKTEVMNS 304


>gi|257094620|ref|YP_003168261.1| tyrosine recombinase XerD [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
 gi|257047144|gb|ACV36332.1| tyrosine recombinase XerD [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
          Length = 304

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 52/275 (18%), Positives = 98/275 (35%), Gaps = 24/275 (8%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRK---ITTKHIRSGVESRKHT--PSSAIQFLTSM 140
            LA  S  S+ S   Q+     +        I    +   V +   T   SS  ++L+++
Sbjct: 26  GLAKASLSSYRSDLGQLAGWLAEQRLGSLCGIDEATLLRFVATLAQTLRASSQARYLSTL 85

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK----SFWSEGSQPRLAF 196
           R  ++  V     + +P L +  P + +   +  ++  +++      S    G + R   
Sbjct: 86  RRFYRHQVAHGRRSSDPTLRIAMPVKPSRLPKVLSELQVERLLGAPPSETPLGQRDRAML 145

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM-------- 247
           E L  +GLR S+     +  +  ++  ++   K      V L +     L          
Sbjct: 146 ETLYATGLRVSELVGLKLHEVSLDMGVVRVFGKGAKERLVPLGEEARDWLRRHLADGRLA 205

Query: 248 --TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGA 302
                  +  F+      M    F    K  A +AG++    S H +R   AT   + GA
Sbjct: 206 LLAGRQSDDVFVTARGAAMTRQAFWQLIKRYALQAGMDPARLSPHVLRHAFATHLLNHGA 265

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
               +    G   +   + YT  A R RL I +++
Sbjct: 266 DLRVVQLLLGHSDISTTQIYTHVA-RERLKILHAQ 299


>gi|71906177|ref|YP_283764.1| tyrosine recombinase XerD subunit [Dechloromonas aromatica RCB]
 gi|71845798|gb|AAZ45294.1| tyrosine recombinase XerD subunit [Dechloromonas aromatica RCB]
          Length = 302

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 45/269 (16%), Positives = 92/269 (34%), Gaps = 24/269 (8%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS-----GVESRKHTPSSAIQFLTSM 140
            LA  +  S+ S   ++     +     +   H  +        +++   +S  ++L+++
Sbjct: 24  GLAKATLDSYRSDLSRLALWLANNASEPLLDLHETTLTAFIAHLAKQTRATSQARYLSTL 83

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAF 196
           R  ++W + +  +  +P L +  P R +   +  +++ ++            G + R   
Sbjct: 84  RRFYRWQLGRGRIVADPTLKLANPSRPSRLPKVMSEKQVEALLDAPDLDTPLGLRDRAML 143

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKET- 254
           E +  +GLR S+     +  +      ++   K      V L    ++ +          
Sbjct: 144 ETIYATGLRVSELVNLRLHEVSLADGVLRALGKGSKERLVPLGQLAIEWIKRYLNEARPD 203

Query: 255 ---------FFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAGA 302
                     FI      M    F    K  A  AG+     S H +R   AT   + GA
Sbjct: 204 ILNGQHSDDLFITARGGGMTRQAFWQLIKRYALIAGIAPDKLSPHVLRHAFATHLLNHGA 263

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRL 331
               +    G   +   + YT  A R RL
Sbjct: 264 DLRVVQLLLGHADISTTQIYTHVA-RERL 291


>gi|213965974|ref|ZP_03394164.1| tyrosine recombinase XerD [Corynebacterium amycolatum SK46]
 gi|213951388|gb|EEB62780.1| tyrosine recombinase XerD [Corynebacterium amycolatum SK46]
          Length = 312

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 45/272 (16%), Positives = 98/272 (36%), Gaps = 33/272 (12%)

Query: 85  GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGVESRKHT----------PS 131
             L+ N+  S++   ++     R+ G  +  ++T + +   +                P+
Sbjct: 19  KGLSANTLASYKRDLEKYRTYLREIGRTELAQVTEQDVSEFLAYLARGDKSEGRPALAPT 78

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF-KSFWSEGS 190
           S  + L+++R   K+AV +  + ++    V  PK+ +   +  + +++ +  +S   +G+
Sbjct: 79  SVTRSLSAVRSFHKFAVGEGALDVDVAKRVAPPKQPSRYPKALSIDEVTRLIESIPDDGT 138

Query: 191 ------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPDGFMK 243
                 + R   EFL  +G R S+     +  +       +   K G    V +    M 
Sbjct: 139 AVVTDLRNRALVEFLYSTGARVSEVTGLDIDDVDRETNLVLLRGKGGKERIVPVGSPAMA 198

Query: 244 LLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRK 291
            L                    FIN+  ++++             +AG+    S H +R 
Sbjct: 199 ALDAWLTRGRPSWVRANSGPALFINSLGRRLSRQSAGNTLAELGERAGLKVKISPHTLRH 258

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYT 323
              T   + GA    +    G  +V   + YT
Sbjct: 259 SFGTHLIEGGADVRVVQELLGHASVTTTQIYT 290


>gi|168467636|ref|ZP_02701473.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|195629975|gb|EDX48635.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
          Length = 300

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 43/259 (16%), Positives = 89/259 (34%), Gaps = 19/259 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRKHTPSSAIQFLT 138
             L+  +  +++   D II  +G+   +          +        +   P+S    L+
Sbjct: 21  RQLSPITLQNYQRQLDAIIALAGETGLKSWQQCDAAIVRSFAVRSRRKGLGPASLALRLS 80

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WSEGSQPRLA 195
           ++R  F W V Q  +  NP   V  PK      +    +D+ +            + R  
Sbjct: 81  ALRSFFDWLVSQGELKANPAKGVSAPKAPRHLPKNIDVDDVNRLLDIDLNDPLAVRDRAM 140

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT--------VELPDGFMKLLAM 247
            E +  +GLR S+     ++HL  +   +     G+           V   + ++ L  +
Sbjct: 141 LEVMYGAGLRLSELVGLDIKHLDLDTGEVWVMGKGSKERRLPIGRNAVTWIEHWLDLRGL 200

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAH 305
               +E  F++   ++++       F     K G+N     H +R   AT   ++     
Sbjct: 201 FASDEEALFLSKLGKRISVRNVQKRFAEWGIKQGLNSHVHPHKLRHSFATHMLESSGDLR 260

Query: 306 ELMATYGWKTVDQAETYTK 324
            +    G   +   + YT 
Sbjct: 261 GVQELLGHANLSTTQIYTH 279


>gi|294787053|ref|ZP_06752307.1| tyrosine recombinase XerD [Parascardovia denticolens F0305]
 gi|315226701|ref|ZP_07868489.1| tyrosine recombinase XerD [Parascardovia denticolens DSM 10105]
 gi|294485886|gb|EFG33520.1| tyrosine recombinase XerD [Parascardovia denticolens F0305]
 gi|315120833|gb|EFT83965.1| tyrosine recombinase XerD [Parascardovia denticolens DSM 10105]
          Length = 310

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 47/270 (17%), Positives = 95/270 (35%), Gaps = 30/270 (11%)

Query: 85  GSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLT 138
             L+  +R ++ES   +    + + G     +I  + + + V S      +  S  + L 
Sbjct: 23  KGLSEATRRAYESDLKKYMAWLARHGIDRPDQIRQEDVETFVASLSQEGESSRSIARRLA 82

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF-------KSFWSEGSQ 191
           S+    ++   +     +    V+ PK  +      T E++++        +       +
Sbjct: 83  SIHEYHRFLTSRGMAQADVSQGVKPPKAASVLPDVLTIEEVRRLLEKTSNERDTDPVVLR 142

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVEL------------- 237
            R   EFL  +G R S++  A +  +  ++ F+  T K      V L             
Sbjct: 143 DRALLEFLYATGARVSEAVGANLTDVDLDDHFARLTGKGNKQRLVPLGSYACQAMERYLD 202

Query: 238 -PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSA 294
            P   ++  A         F+N   ++++        +  A +AG+ K    H +R   A
Sbjct: 203 GPRAQLQAKAAKGAEVNAIFLNKKGKRLSRQSVWEIVQKAADRAGITKEVHPHTLRHSCA 262

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324
           T     GA    +    G  +V   + YT 
Sbjct: 263 THLIQGGADVRMVQELLGHASVTTTQIYTH 292


>gi|298373800|ref|ZP_06983789.1| tyrosine recombinase XerD [Bacteroidetes oral taxon 274 str. F0058]
 gi|298274852|gb|EFI16404.1| tyrosine recombinase XerD [Bacteroidetes oral taxon 274 str. F0058]
          Length = 307

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 45/269 (16%), Positives = 97/269 (36%), Gaps = 29/269 (10%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKH---TPSSAIQFLTS 139
            S++ N+ +++      +         DYR+ T  ++++ +        +  S  + ++ 
Sbjct: 20  KSMSENTVVAYIRDLHTLSEYLDGIGIDYRQATLTNLKNLIVELTDLGISGRSRARMISG 79

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF-----------KSFWSE 188
           ++  +++ +    +  +P   +E+P+         + E++ +             +  + 
Sbjct: 80  IKSFYRFCIIDRLLEADPTEQLEQPQLPLYLPDVLSVEEIDRIIVTIDLSEVDKYTKLNI 139

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGF------ 241
           G +     E L  SG+R S+   A +  +  +  F     K      V L D        
Sbjct: 140 GHRNLAIVEVLYGSGVRVSELVYAKISDINFDEKFIKILGKGNKERLVPLSDPAIRAINN 199

Query: 242 ----MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSAT 295
                ++L   P  ++  F+N    +M      +  K    KAG+ K  S H  R   AT
Sbjct: 200 WFLARRVLTPKPKHEDYIFLNRRGARMTRQMVFLAIKNMVEKAGITKTVSPHTFRHSFAT 259

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTK 324
              + GA    +    G  ++   E YT 
Sbjct: 260 HLLENGANLRAIQQLLGHASITTTEIYTH 288


>gi|258511717|ref|YP_003185151.1| tyrosine recombinase XerD [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257478443|gb|ACV58762.1| tyrosine recombinase XerD [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 294

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 46/262 (17%), Positives = 97/262 (37%), Gaps = 22/262 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
             L+ N+  S+        +          D  +       S ++ R    ++  + +++
Sbjct: 16  RGLSENTATSYARDLADFSQYLAREQRTMRDADRTAVLRYLSDLKRRGMKSTTIARRMSA 75

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KSFWSEGSQPRLA 195
           +R  F++ +R+  +  +P  ++E         R  ++ED+++     +   + G + R  
Sbjct: 76  LRSFFRYLLREGVLQADPTANIEVAAPDEHLPRVVSEEDVERLIGAVRRPDAMGLRDRAM 135

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLL--------- 245
            E L  +G+R S+     ++ ++     I+   K      V L +     L         
Sbjct: 136 LETLYATGVRVSELLALSLEDVELAAGFIRVFGKGKKERVVPLGEIAQDALGLYLRYGRP 195

Query: 246 -AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302
             +   G+   F+N   ++M    F    K  A +AGV+   + H +R   AT   + GA
Sbjct: 196 LLVRDRGESAVFLNRLGRRMTRQGFWNILKGYARQAGVSAEVTPHTLRHSFATHLLEGGA 255

Query: 303 TAHELMATYGWKTVDQAETYTK 324
               +    G   +   E YT 
Sbjct: 256 DLRVVQELLGHADISTTERYTH 277


>gi|161617068|ref|YP_001591033.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|168238402|ref|ZP_02663460.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|168244638|ref|ZP_02669570.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|168263161|ref|ZP_02685134.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|194447983|ref|YP_002047961.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194736121|ref|YP_002116878.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|161366432|gb|ABX70200.1| hypothetical protein SPAB_04901 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194406287|gb|ACF66506.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194711623|gb|ACF90844.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197288766|gb|EDY28141.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|205336497|gb|EDZ23261.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|205348233|gb|EDZ34864.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
          Length = 300

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 44/259 (16%), Positives = 90/259 (34%), Gaps = 19/259 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRKHTPSSAIQFLT 138
             L+  +  +++   D II  +G+   +          +        +   P+S    L+
Sbjct: 21  RQLSPITLQNYQRQLDAIIALAGETGLKSWQQCDAAIVRSFAVRSRRKGLGPASLALRLS 80

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WSEGSQPRLA 195
           ++R  F W V Q  +  NP   V  PK      +    +D+ +            + R  
Sbjct: 81  ALRSFFDWLVSQGELKANPAKGVSAPKAPRHLPKNIDVDDVNRLLDIDLNDPLAVRDRAM 140

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT--------VELPDGFMKLLAM 247
            E +  +GLR S+     ++HL  +   +     G+           V   + ++ L  +
Sbjct: 141 LEVMYGAGLRLSELVGLDIKHLDLDTGEVWVMGKGSKERRLPIGRNAVTWIEHWLDLRGL 200

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAH 305
               +E  F++   ++++A      F     K G+N     H +R   AT   ++     
Sbjct: 201 FASDEEALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVHPHKLRHSFATHMLESSGDLR 260

Query: 306 ELMATYGWKTVDQAETYTK 324
            +    G   +   + YT 
Sbjct: 261 GVQELLGHANLSTTQIYTH 279


>gi|194445824|ref|YP_002043179.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|200387005|ref|ZP_03213617.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|194404487|gb|ACF64709.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|199604103|gb|EDZ02648.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
          Length = 300

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 44/259 (16%), Positives = 90/259 (34%), Gaps = 19/259 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRKHTPSSAIQFLT 138
             L+  +  +++   D II  +G+   +          +        +   P+S    L+
Sbjct: 21  RQLSPITLQNYQRQLDAIIALAGETGLKSWQQCDAAIVRSFAVRSRRKGLGPASLALRLS 80

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WSEGSQPRLA 195
           ++R  F W V Q  +  NP   V  PK      +    +D+ +            + R  
Sbjct: 81  ALRSFFDWLVSQGELKANPAKGVSAPKAPRHLPKNIDVDDVNRLLDIDLNDPLAVRDRAM 140

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT--------VELPDGFMKLLAM 247
            E +  +GLR S+     ++HL  +   +     G+           V   + ++ L  +
Sbjct: 141 LEVMYGAGLRLSELVGLDIKHLDLDTGEVWVMGKGSKERRLPIGRNAVTWIEHWLDLRGL 200

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAH 305
               +E  F++   ++++A      F     K G+N     H +R   AT   ++     
Sbjct: 201 FASDEEALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVHPHKLRHSFATHMLESSGDLR 260

Query: 306 ELMATYGWKTVDQAETYTK 324
            +    G   +   + YT 
Sbjct: 261 GVQELLGHANLSTTQIYTH 279


>gi|16762185|ref|NP_457802.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|29143674|ref|NP_807016.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|213162145|ref|ZP_03347855.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213425411|ref|ZP_03358161.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213649576|ref|ZP_03379629.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|213854889|ref|ZP_03383129.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|289829107|ref|ZP_06546781.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
 gi|34222945|sp|Q8Z3A8|XERC_SALTI RecName: Full=Tyrosine recombinase xerC
 gi|25299264|pir||AI0918 integrase/recombinase [imported] - Salmonella enterica subsp.
           enterica serovar Typhi (strain CT18)
 gi|16504489|emb|CAD09371.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|29139309|gb|AAO70876.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
          Length = 300

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 44/259 (16%), Positives = 90/259 (34%), Gaps = 19/259 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRKHTPSSAIQFLT 138
             L+  +  +++   D II  +G+   +          +        +   P+S    L+
Sbjct: 21  RQLSPITLQNYQRQLDAIIALAGETGLKSWQQCDAAIVRSFAVRSRRKGLGPASLALRLS 80

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WSEGSQPRLA 195
           ++R  F W V Q  +  NP   V  PK      +    +D+ +            + R  
Sbjct: 81  ALRSFFDWLVSQGELKANPAKGVSAPKAPRHLPKNIDVDDVNRLLDIDLNDPLAVRDRAM 140

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT--------VELPDGFMKLLAM 247
            E +  +GLR S+     ++HL  +   +     G+           V   + ++ L  +
Sbjct: 141 LEVMYGAGLRLSELVGLDIKHLDLDTGEVWVMGKGSKERRLPIGRNAVTWIEHWLDLRGL 200

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAH 305
               +E  F++   ++++A      F     K G+N     H +R   AT   ++     
Sbjct: 201 FASDEEALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVHPHKLRHSFATHMLESSGDLR 260

Query: 306 ELMATYGWKTVDQAETYTK 324
            +    G   +   + YT 
Sbjct: 261 GVQELLGHANLSTTQIYTH 279


>gi|171915713|ref|ZP_02931183.1| hypothetical protein VspiD_31120 [Verrucomicrobium spinosum DSM
           4136]
          Length = 297

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 54/289 (18%), Positives = 102/289 (35%), Gaps = 27/289 (9%)

Query: 75  ISEYRKS-AHWGSLAVNSRISFESYFD----QIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           I  +    A    L+VN ++      +     + R+    D   +TT+HI   +  RK  
Sbjct: 5   IDAFLLHLATERGLSVNYQLLVRRVLETFASWLHREHDSDDIADVTTQHISGFLGHRKGD 64

Query: 130 ---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS-- 184
              PSS    L ++++ F+W   +     +P   V  P+ +        + ++++     
Sbjct: 65  GLIPSSLRVELVALKIFFRWLAARGRRLGDPAEPVLPPRVEQSLPDTLNEPEVRRLLESV 124

Query: 185 --FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-VELPDGF 241
                   + R   E    SGLR S+   A V++L      ++    G     V +    
Sbjct: 125 TGQEPLDLRDRAILEIFYASGLRISEVTGARVENLSLEEGWVRVTGKGNKTRLVPVGGAA 184

Query: 242 MKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHG 288
              ++            P  K   F+N +  ++   +     K +A  AG++      H 
Sbjct: 185 RDAISRYLDSARPQLVKPKTKSFIFLNRNGGQLTTARVWQIVKERAAAAGMDADRIYPHL 244

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
           +R   AT     GA    +    G   +   + YT   D+ RL   + +
Sbjct: 245 LRHSFATHLLGNGADLRVIQEMLGHADIATTQIYTH-VDQKRLKDTHRK 292


>gi|227489005|ref|ZP_03919321.1| site-specific tyrosine recombinase XerD [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227091081|gb|EEI26393.1| site-specific tyrosine recombinase XerD [Corynebacterium
           glucuronolyticum ATCC 51867]
          Length = 360

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 45/270 (16%), Positives = 88/270 (32%), Gaps = 24/270 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT---PSSAIQFLTSMR 141
              A N+  S+       +   G+     I    I + ++S        +S  + L+++R
Sbjct: 81  RGKARNTIASYRRDLASYLDFVGERSLDSIAATDIEAFLQSLGRHGLAVTSVRRMLSTIR 140

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLAFE 197
               +A  +  VA +    +  P          + +++       +       + +   E
Sbjct: 141 GFHAFARDEGIVADDVAHDITPPAMPQHLPDTLSVDEINTLIESQAGDSAVALRNKALLE 200

Query: 198 FLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE 253
            L  +G R S+     V  +    + +   + T K      V +     + +    +   
Sbjct: 201 LLYGTGARISEVLSLAVDDITALEETDGILVLTGKGDKQRIVPVGSHARQAVDAYLVRGR 260

Query: 254 ----------TFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301
                      F      + M+        K  AT+AG+ K  S H +R   AT   + G
Sbjct: 261 PQLNKGKSAALFLNVRGGKAMSRQSAWQVVKQAATEAGITKDISPHTLRHSFATHLLEGG 320

Query: 302 ATAHELMATYGWKTVDQAETYTK-GADRIR 330
           A    +    G  +V   + YT   AD +R
Sbjct: 321 ADVRSVQELLGHASVTTTQIYTHITADSLR 350


>gi|154489817|ref|ZP_02030078.1| hypothetical protein PARMER_00045 [Parabacteroides merdae ATCC
           43184]
 gi|154089259|gb|EDN88303.1| hypothetical protein PARMER_00045 [Parabacteroides merdae ATCC
           43184]
          Length = 407

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 59/353 (16%), Positives = 114/353 (32%), Gaps = 31/353 (8%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYI----N 62
            P F  K   R   +  Y       R           +   M        + +       
Sbjct: 57  RPKFAIKHHRRKENLSLYL--IDKPRTPAERQQNKETLELAMRIRAEREQEFKESMLGYR 114

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG----DFDYRKITTKH 118
             + +          Y  S     + +  +I+   + D +  K            IT + 
Sbjct: 115 LKKDRAVNFLDYFQAYINSYTKKDIRMV-QIALSRFKDFLKEKYPMNECSIKPELITKEM 173

Query: 119 IRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR--PW 174
           +   V   +       A       + + ++A+  + +  +PC  V   K  ++ +R    
Sbjct: 174 MEQFVAYLQSRSVGEGAKSIYQRFKKVIRYAIEHDVMLKDPCKDVT-CKVDSQMLRKDVL 232

Query: 175 TKEDMQQFKSFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTG 230
           + E++Q+  +   +   P  R  F F LY GLR  D      +++   N +   +  KT 
Sbjct: 233 SLEEIQKLMACHYDNENPIVRRTFIFCLYCGLRFCDVKDLTYRNVDYANRLLKFEQSKTK 292

Query: 231 -----TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284
                + + + L DG + ++   P  K     +               K    +AG++K 
Sbjct: 293 GHSASSGVVIPLNDGLLSIIGEAPADKNCLIFDLP----TYESCCKSVKRWVKRAGIDKH 348

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
            S H  R   A    + GA    + +  G   +   E YT+  D+++    NS
Sbjct: 349 ISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVDKLKEEAINS 401


>gi|119026081|ref|YP_909926.1| site-specific tyrosine recombinase XerC [Bifidobacterium
           adolescentis ATCC 15703]
 gi|118765665|dbj|BAF39844.1| probable integrase [Bifidobacterium adolescentis ATCC 15703]
          Length = 329

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 55/283 (19%), Positives = 100/283 (35%), Gaps = 36/283 (12%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGVE--SRKHTP 130
             Y K      L+ N+R ++ S  ++    +RK G  D  ++T + +R  +   S+ H  
Sbjct: 32  DAYLK--ANRGLSANTRRAYRSDVEECLVALRKQGCVDLNEVTIEDLRLWMAESSKNHAR 89

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-- 188
           SS  +   ++R  F WA   +  + NP  S++ PK          +   QQ      E  
Sbjct: 90  SSMARKTVAVRGFFAWAYDHDMASANPAASLQTPKIPDTLPAVLNETQAQQLMDRVDEDG 149

Query: 189 ---------------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233
                            +     E L  +G+R ++     V  +     ++K    G   
Sbjct: 150 MEARSQEPNMKKQAIALRDAAMLELLYATGMRVAELVGLDVADVTFGNRTVKVTGKGDKQ 209

Query: 234 TV-----ELPDGFMKLLA------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
            V              L          +  + FF+ +   +++          +A +AGV
Sbjct: 210 RVMPFGAPADKALRDWLEHGRPVLCGDMSDDAFFLGSQGGRIDQRMVRKVVHDRAREAGV 269

Query: 283 -NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            + S H +R  +AT   D GA   E+    G  ++   + YT 
Sbjct: 270 PDISPHALRHSAATHMLDGGADLREVQEMLGHSSLKTTQRYTH 312


>gi|326790035|ref|YP_004307856.1| integrase family protein [Clostridium lentocellum DSM 5427]
 gi|326540799|gb|ADZ82658.1| integrase family protein [Clostridium lentocellum DSM 5427]
          Length = 374

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 47/291 (16%), Positives = 97/291 (33%), Gaps = 36/291 (12%)

Query: 89  VNSRISFESYFDQIIRK--SGDFDYRKITTKHIRSGVESRKHTPSSAIQFLT-SMRVLFK 145
            ++   + S ++  I+    G      I    I++   S+    +  ++ +  ++R +F+
Sbjct: 84  ASTFERYMSIYNTHIKNSVIGKTSITDINQIDIQNFFNSKNDMATGVLKIMRYTIRRVFE 143

Query: 146 WAVRQEYVAINPCLSVERP--KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203
           +A + + +  NPC+ ++ P  K KT  I   T ++ ++F    S     +  F   L++G
Sbjct: 144 YAKKHDVIRENPCIGIKIPPSKAKTRDIIIMTLDEQEKFIEAASTRD-NKALFLTALFTG 202

Query: 204 LRCSDSCRAGVQHLQNNIFSIKT--------------------------QKTGTIITVEL 237
           LR  +      +++     +I                             K G  I V +
Sbjct: 203 LRMGELIALKWENVDLKNGTINVCESYKRVRAYTDNGDSEYIIDKKAPKTKNGNRI-VPI 261

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATI 296
           P   + +L       E  F N   Q M         K    +A +   + H +R   AT 
Sbjct: 262 PTKLLPILKEIRTDNELVFCNAKGQPMTEITIRREQKRICEQAQIRYINFHALRHTYATR 321

Query: 297 SADAGATAHELMATYGWKTVDQA-ETYTKGA-DRIRLGIKNSRRISSVVDS 345
             + G     +    G   +      Y     D  +  +    +  +    
Sbjct: 322 LIENGIDVKTVSMLVGHADIQTTLNIYVHSTDDTKKNAVNTLDKFFNCKSY 372


>gi|161505543|ref|YP_001572655.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160866890|gb|ABX23513.1| hypothetical protein SARI_03708 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 300

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 44/259 (16%), Positives = 92/259 (35%), Gaps = 19/259 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYR------KITTKHIRSGVESRKHTPSSAIQFLT 138
             L+  + ++++   D II  +G+   +       +  +        +   P+S    L+
Sbjct: 21  RQLSPITLLNYQRQLDAIIALAGEAGLKSWQQCDAVMVRGFAVRSRRKGLGPASLALRLS 80

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WSEGSQPRLA 195
           ++R  F W V Q  +  NP   V  PK      +    +D+ +            + R  
Sbjct: 81  ALRSFFDWLVSQGELKANPAKGVSAPKAPRHLPKNIDVDDVNRLLDIDLNDPLAVRDRAM 140

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT--------VELPDGFMKLLAM 247
            E +  +GLR S+     ++HL  +   +     G+           V   + ++ L  +
Sbjct: 141 LEVMYGAGLRLSELVGLDIKHLDLDTGEVWVMGKGSKERRLPIGRNAVTWIEHWLDLRGL 200

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAH 305
               +E  F++   ++++A      F     K G+N     H +R   AT   ++     
Sbjct: 201 FASDEEALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVHPHKLRHSFATHMLESSGDLR 260

Query: 306 ELMATYGWKTVDQAETYTK 324
            +    G   +   + YT 
Sbjct: 261 GVQELLGHANLSTTQIYTH 279


>gi|24215183|ref|NP_712664.1| integrase/recombinase XerD [Leptospira interrogans serovar Lai str.
           56601]
 gi|45657354|ref|YP_001440.1| putative integrase/recombinase protein [Leptospira interrogans
           serovar Copenhageni str. Fiocruz L1-130]
 gi|34222802|sp|Q7ZAM7|XERD_LEPIN RecName: Full=Tyrosine recombinase xerD
 gi|73920480|sp|Q72SA5|XERD_LEPIC RecName: Full=Tyrosine recombinase xerD
 gi|24196257|gb|AAN49682.1| integrase/recombinase XerD [Leptospira interrogans serovar Lai str.
           56601]
 gi|45600593|gb|AAS70077.1| putative integrase/recombinase protein [Leptospira interrogans
           serovar Copenhageni str. Fiocruz L1-130]
          Length = 298

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 43/266 (16%), Positives = 95/266 (35%), Gaps = 22/266 (8%)

Query: 85  GSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVES---RKHTPSSAIQFLTS 139
             L+ NS  S+    ++     +    D+ K+    I   +     RK +  +  + + +
Sbjct: 20  KGLSDNSIYSYGYDLNKFKNFLEKEHIDFLKVQADDIMRFLNEEKDRKISSKTIAREVVA 79

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLA 195
           +R  +K+   ++ +  NP   +E P+         T++++++  +   E      + +  
Sbjct: 80  IRQFYKFLKDEKKLDTNPTEKIETPEVMRSIPDYLTQDEIEELFASIKEDNLYELRDKCI 139

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-KTGTIITVEL----PDGFMKLLA---- 246
           FE L  SGLR S++C   +  +     ++  + K G    V       D   + L     
Sbjct: 140 FELLYSSGLRISEACNLRLNDMDLEGMTLTVEGKGGRQRLVPFGEKSLDILNRYLKQSRP 199

Query: 247 --MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGA 302
             +     E  F++     +N             +  +    + H +R   AT   +  A
Sbjct: 200 FILKSRNCEYLFVSKKGSYINRKSVWRLLNHYIKRTSILKKVTPHTLRHSFATHLLENHA 259

Query: 303 TAHELMATYGWKTVDQAETYTKGADR 328
               +    G   +   + YT  A++
Sbjct: 260 DLKSVQELLGHIDIATTQIYTHMANK 285


>gi|121998438|ref|YP_001003225.1| tyrosine recombinase XerD [Halorhodospira halophila SL1]
 gi|121589843|gb|ABM62423.1| tyrosine recombinase XerD [Halorhodospira halophila SL1]
          Length = 254

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 43/235 (18%), Positives = 79/235 (33%), Gaps = 18/235 (7%)

Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
             +   +    P +  + L+S+R  ++  V     + +P   VE P+         T+  
Sbjct: 15  YLAERVAAGARPRTTARLLSSLRRFYRRLVSTGERSDDPTAEVEAPRLGQPLPGALTERQ 74

Query: 179 MQQFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-I 233
           ++   +        G + R   E L  +GLR S+     V  +      ++    G    
Sbjct: 75  VEALLAAPDTGDPLGLRDRCLLEVLYATGLRVSELVALRVDGVSLRQGVVRVIGKGDRER 134

Query: 234 TVELPDGFMKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
            V L +  +  +                 E  F+    + +    F    K  A  AG++
Sbjct: 135 LVPLGEEAVDWVRRYLEEVRPLLLDGRAAEALFVTRRGEGLTRQAFWYRVKRYAAAAGID 194

Query: 284 --KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
              S H +R   AT   + GA    +    G   +   + YT  A R RL   ++
Sbjct: 195 PAISPHTLRHSFATHLINHGADLRVVQMLLGHADLSTTQIYTHVA-RQRLQQLHA 248


>gi|325136023|gb|EGC58633.1| tyrosine recombinase XerD [Neisseria meningitidis M0579]
 gi|325202450|gb|ADY97904.1| tyrosine recombinase XerD [Neisseria meningitidis M01-240149]
 gi|325207798|gb|ADZ03250.1| tyrosine recombinase XerD [Neisseria meningitidis NZ-05/33]
          Length = 291

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 46/280 (16%), Positives = 98/280 (35%), Gaps = 21/280 (7%)

Query: 74  LISEYRKSAHWGS--LAVNSRISFESYFDQIIRKSGDFD--YRKITTKHIRSGVESRKHT 129
           LI    ++  W    L+ N+   +    ++I R+        +      + + V      
Sbjct: 5   LIDRLLETL-WLDRRLSQNTLNGYRRDLEKIARRLSQSGRMLKDADEADLAAAVYVDGEQ 63

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---- 185
            SS  + L++ + L+ W  R+     NP   ++ PK         T++ + +  +     
Sbjct: 64  RSSQARALSACKRLYIWMEREGIRTDNPTRLLKPPKIDKNIPTLITEQQISRLLATPDTD 123

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG---- 240
              G + +   E +  +GLR S++      ++  +   I    K      V +       
Sbjct: 124 TPHGLRDKALLELMYATGLRVSEAVGLNFGNVDLDRGCITALGKGDKQRMVPMGQESAYW 183

Query: 241 ------FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFS 293
                   + L +     +  F++  K  ++     +  K  A++AG+   S H +R   
Sbjct: 184 VERYYTEARPLLLKGRNCDALFVSQKKTGISRQLAWMIVKEYASQAGIGHISPHSLRHAF 243

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           AT     G     +    G   ++  + YT  A+    G+
Sbjct: 244 ATHLVQHGLDLRVVQDMLGHADLNTTQIYTHVANVWLQGV 283


>gi|291286626|ref|YP_003503442.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809]
 gi|290883786|gb|ADD67486.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809]
          Length = 342

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 55/338 (16%), Positives = 116/338 (34%), Gaps = 13/338 (3%)

Query: 17  RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76
           +H    YY       +  L   +++     + +       K+    +  +K  T+    +
Sbjct: 5   KHSNGTYYVIIDRNHKRSLGTKNKAEAERIFKALKKSDFQKK---IADLEKTETISEFFA 61

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSA 133
           +  +   +      +  S     +      G+     +T K +      R    +  +S 
Sbjct: 62  DCLEDYKYKK-EKATYTSMSYSLNAFEGFIGEKLLNGVTKKDLSDFTTHRLKAGYAKTSI 120

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
              + +++  F  AV  E +A NP    ++ K      +  T +D+ +F +   +    R
Sbjct: 121 NIDIRNIKAAFSKAVEWEKLAQNPLNGFKQLKIDKNLPKFLTFDDLDKFANILGDN-PLR 179

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251
            AF F + +G R S++       +     +  I+  K      + + D   +LL      
Sbjct: 180 HAFFFYVLTGCRRSEALVLTWDDIDFTRMVVHIRKTKNHEARDIPICDSLYELLNGITPK 239

Query: 252 KETFFINN-DKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMA 309
           +   F        ++    +   K   T+AG  +   H +R   A++ A +G T   +  
Sbjct: 240 QGYLFPGKIKGTHLDKDTMTHNIKDCLTEAGFPDMRLHDLRHTFASLLALSGETLQTIRD 299

Query: 310 TYGWKTVDQAETYTK-GADRIRLGIKNSRRISSVVDSD 346
             G   +   E Y    AD ++  +   +   S  D D
Sbjct: 300 LLGHSDIRTTEIYAHLTADHLKAAVNKLKVNVSTTDKD 337


>gi|150020077|ref|YP_001305431.1| phage integrase family protein [Thermosipho melanesiensis BI429]
 gi|149792598|gb|ABR30046.1| phage integrase family protein [Thermosipho melanesiensis BI429]
          Length = 282

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 51/281 (18%), Positives = 106/281 (37%), Gaps = 23/281 (8%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK------HT 129
           S+Y         + N+  ++     + +    +   ++I  K I + +++        ++
Sbjct: 8   SDYLAHVRRH--SENTLKAYLKDVRKFLEYI-NKPIKEIERKDIETFLKALSKGEITENS 64

Query: 130 PS--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           P   +  ++++S+   F +      ++ NP   ++ P+ + +     T+E++++    + 
Sbjct: 65  PRETTISRYISSLNSFFNYLELSGTISNNPMERIKHPRLRRKIPDFLTEEEIKKLIDVFD 124

Query: 188 EGS--QPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMK 243
           E +  + +LA   L Y+GLR S+ C      +        I+  K      V LPD  + 
Sbjct: 125 EETEMKKKLAISLLYYAGLRISELCNLRTTDISFIPPFLRIEMGKGRKDRLVPLPDKVLP 184

Query: 244 LLAM---TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISA 298
           LL         K   F N  K    +T F  W K    +A + K    H +R   AT   
Sbjct: 185 LLQKYLELKNPKIYVFENEAKHVHPSTVF-RWLKDGVKRAKIKKQVHPHTLRHSYATHLI 243

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
             G     +    G   +     Y   AD+ +      +++
Sbjct: 244 RKGVNIKVVQELLGHTNLSTTSIYLHVADQEK--FDAVKKL 282


>gi|325127862|gb|EGC50768.1| tyrosine recombinase XerD [Neisseria meningitidis N1568]
          Length = 291

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 46/280 (16%), Positives = 99/280 (35%), Gaps = 21/280 (7%)

Query: 74  LISEYRKSAHWGS--LAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRKHT 129
           LI    ++  W    L+ N+   +    ++I R+        +      + + V      
Sbjct: 5   LIDRLLETL-WLDRRLSQNTLNGYRRDLEKIARRLSQSGRTLKDADEADLAAAVYVDGEQ 63

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---- 185
            SS  + L++ + L+ W  R+     NP   ++ PK         T++ + +  +     
Sbjct: 64  RSSQARALSACKRLYIWMEREGIRTDNPTCLLKPPKIDKNIPTLITEQQISRLLAAPDTD 123

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG---- 240
              G + +   E +  +GLR S++      ++  +   I    K      V +       
Sbjct: 124 TPHGLRDKALLELMYATGLRVSEAVGLNFGNVDLDRGCITALGKGDKQRMVPMGQESAYW 183

Query: 241 ----FMKLLAMTPIGK--ETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFS 293
               + +       G+  +  F++  K  ++     +  K  A++AG+   S H +R   
Sbjct: 184 VGRYYTEARPALLKGRSCDALFVSQKKTGISRQLAWMIVKEYASQAGIGHISPHSLRHAF 243

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           AT     G     +    G   ++  + YT  A+    G+
Sbjct: 244 ATHLVQHGLDLRVVQDMLGHADLNTTQIYTHVANVWLQGV 283


>gi|215486111|ref|YP_002328542.1| predicted integrase [Escherichia coli O127:H6 str. E2348/69]
 gi|312968948|ref|ZP_07783155.1| integrase [Escherichia coli 2362-75]
 gi|215264183|emb|CAS08527.1| predicted integrase [Escherichia coli O127:H6 str. E2348/69]
 gi|312286350|gb|EFR14263.1| integrase [Escherichia coli 2362-75]
          Length = 357

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 61/341 (17%), Positives = 109/341 (31%), Gaps = 23/341 (6%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMS---ALTGSTPKREYINS 63
           LPP +     R+     Y     G+   L          A  +    L+ S  K      
Sbjct: 12  LPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELLSDSGRKSLIDRI 68

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
                 TL   +  Y        +   + + + S    I RK  D     I+TK + + +
Sbjct: 69  KGGDAITLHVWLDRYETILTERGIRPKTLLDYASKIRAIRRKLPDKPLTDISTKEVAAML 128

Query: 124 ESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
            +   +   +SA    +++  +F+ A+ + +VA NP  +    K +    R    E ++ 
Sbjct: 129 NTYVAEGKAASAKLIRSTLVDVFREAIAEGHVATNPVTATRTAKSEVRRSRLTANEYVEI 188

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241
           + +        RLA +  + +G R  D CR     + +N   IK  KTG  + + L    
Sbjct: 189 YHAAEPLPIWLRLAMDLAVVTGQRVGDLCRMKWSDINDNHLHIKQSKTGAKLAIPLTLTI 248

Query: 242 MKL---------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NKSAH 287
             L                 ET   +     ++    S +F      +G+       + H
Sbjct: 249 DALNISLADTLQKCREASSSETIIASKHHDPLSPKTVSKYFTKARNASGLSFDGNPPTFH 308

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
            +R   +                 G K+   A  Y     R
Sbjct: 309 ELR-SLSARLYRNQIGDKFAQRLLGHKSDSMAARYRDSRGR 348


>gi|119716715|ref|YP_923680.1| tyrosine recombinase XerD [Nocardioides sp. JS614]
 gi|119537376|gb|ABL81993.1| tyrosine recombinase XerD subunit [Nocardioides sp. JS614]
          Length = 318

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 44/275 (16%), Positives = 89/275 (32%), Gaps = 36/275 (13%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----------KHIRSGVESRKHTPSSA 133
             LA N+  S+     +      +     +             +      +    + +SA
Sbjct: 24  RGLATNTLTSYRRDLRRYQEYLAECGVEHLADVTEGTVAAFLVRLREGDRDHPALSATSA 83

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-FKSFWSEGS-- 190
            + + ++R   ++AV     A +P  +V+ P       +     D++   ++  + G+  
Sbjct: 84  ARTVVAVRGFHRFAVADGLAATDPASAVKPPTPAKRLPKALPLADVEAILEAAGAPGTTL 143

Query: 191 --QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-----TQKTGTIITVELPDGFMK 243
             + R   E L  +G R S++    V  L      ++       K G    V +     +
Sbjct: 144 ALRDRALLEVLYGTGARISEAVGLDVDDLDWGESGVEGTVLLRGKGGKERLVPVGSYARE 203

Query: 244 LLAM-------------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288
            +                 +     F+N    +++           A +AGV +  S H 
Sbjct: 204 AVDAYLVRGRPELVAASARVTGGALFLNARGGRLSRQSAWAVLVRAAERAGVTRDVSPHT 263

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           +R   AT   D GA    +    G  +V   + YT
Sbjct: 264 LRHSFATHLLDGGADVRVVQELLGHASVTTTQVYT 298


>gi|308050773|ref|YP_003914339.1| tyrosine recombinase XerD [Ferrimonas balearica DSM 9799]
 gi|307632963|gb|ADN77265.1| tyrosine recombinase XerD [Ferrimonas balearica DSM 9799]
          Length = 295

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 47/275 (17%), Positives = 93/275 (33%), Gaps = 23/275 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRK---HTPSSAIQFLTS 139
             L+ N+  ++ S   +        D    +  +  IR  +  RK      +S  + L++
Sbjct: 18  RGLSDNTLAAYRSDLCRFAEFLSERDTPLARADSLDIRDYLAHRKSIGAAKTSTARSLSA 77

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195
           +R  F   VR+     +P   + +PK   +     ++ +++              + +  
Sbjct: 78  LRRFFADLVRRGEREADPMALIAQPKMDRKLPDSLSEAEVEALLDAPECDDPIQLRDKAM 137

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK-- 252
            E L  +GLR S+     ++ +           K G    V + +     L +       
Sbjct: 138 LELLYATGLRVSELTGLQMEQVSLRQGVVRVVGKGGKERLVPMGEQAQHQLEVYLREARG 197

Query: 253 --------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302
                   +  F +    +M    F    K  A ++G+ K  S H +R   AT   + GA
Sbjct: 198 MLLGVNRSDVLFPSKRGVQMTRQTFWHRVKFYAQQSGITKPLSPHTLRHAFATHLLNHGA 257

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
               +    G   +   + YT  A + RL   +  
Sbjct: 258 DLRVVQLLLGHSDLSTTQIYTHVA-QARLTELHRE 291


>gi|257892241|ref|ZP_05671894.1| phage integrase [Enterococcus faecium 1,231,408]
 gi|257828620|gb|EEV55227.1| phage integrase [Enterococcus faecium 1,231,408]
          Length = 223

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 34/206 (16%), Positives = 76/206 (36%), Gaps = 17/206 (8%)

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQ 191
            ++S+R   ++  ++     +P   ++ PK+  +     T  ++++           G +
Sbjct: 1   MISSLRRFHQFLRQERITDHDPMQHIDTPKKAQKLPSTLTLTEVEKLIEAPDTTKTLGIR 60

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM--- 247
            R   E +  +G+R S+     +  L  ++  ++T  K      + L D  ++ L     
Sbjct: 61  DRAILEVMYATGMRVSELIGLKLGDLHLSLGLVQTVGKGDKERIIPLGDYAIQWLERYLD 120

Query: 248 -------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISA 298
                      +   F+NN  + ++        K    +AG+ K  + H +R   AT   
Sbjct: 121 EARPLLVKDASEMHVFVNNHGKGLSRQGIWKNLKQLVREAGIYKEVTPHTLRHSFATHLL 180

Query: 299 DAGATAHELMATYGWKTVDQAETYTK 324
           + GA    +    G   +   + YT 
Sbjct: 181 ENGADLRTVQELLGHADISTTQIYTH 206


>gi|85859869|ref|YP_462071.1| integrase [Syntrophus aciditrophicus SB]
 gi|85722960|gb|ABC77903.1| integrase [Syntrophus aciditrophicus SB]
          Length = 334

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 48/256 (18%), Positives = 102/256 (39%), Gaps = 16/256 (6%)

Query: 93  ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS-SAIQFLTSMRVLFKWAVRQE 151
              +S F+++I   G+   +KI  K +   +    +     A + L  ++ LF   V ++
Sbjct: 71  KENKSLFEKLILAWGNK--KKIERKDVDDYLSRVANNSHYVANKELRFIKALFNHGVERD 128

Query: 152 YVAINPCLSVER-PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210
            +  NP   ++  P  K +   P  +ED+++   F     + +L    +L +  R ++  
Sbjct: 129 MINSNPAEKIKFFPIEKNKKYIP-PEEDIRKVFEFC--NDEQKLYLTAVLCTMARINEIN 185

Query: 211 RAGVQHLQNNIFSIKTQKTG----TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA 266
           +   + +  +   +KT+K+     T   + L +   ++    P   E  F + D +    
Sbjct: 186 KLKWEDIHKDYLILKTRKSKNSDLTERIIPLNETLKEVFDTVPRIAEYVFCHEDGKPYFY 245

Query: 267 TQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
                + K     AGV     H +R + A+  A++G    ++ A  G +     + Y + 
Sbjct: 246 RS--KFLKTACRMAGVRYFGYHALRHYGASRLANSGVPITDIQALLGHQRPTTTDIYLQS 303

Query: 326 ADRIRLGIKNSRRISS 341
             R  L I   + + S
Sbjct: 304 I-RKSL-IGAMKNLES 317


>gi|46446092|ref|YP_007457.1| site-specific tyrosine recombinase XerC [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|46399733|emb|CAF23182.1| putative XerC Protein [Candidatus Protochlamydia amoebophila UWE25]
          Length = 329

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 48/262 (18%), Positives = 91/262 (34%), Gaps = 25/262 (9%)

Query: 94  SFESYFDQIIRKSGDFDYRKITTKHIR---SGVESRKHTPSSAIQFLTSMRVLFKWAVRQ 150
           + ESY  +     G      I  K IR   + + + +    +  + L+S+R  F++   Q
Sbjct: 57  ARESYQQRQSCHDGILKLEDIDRKTIRGFLAWLSANQQNKRTIARRLSSLRSFFRYLQTQ 116

Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKSFWSEGSQPRLAFEFLLYSGLRC 206
             + INP   +E PK   +     + E +    +Q  +    G + R   E    SGLR 
Sbjct: 117 NLIQINPTEELESPKLNKKLPVSLSYEQVSLLFEQPDTTSYLGFRDRTIMELFYSSGLRV 176

Query: 207 SDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLL---------------AMTPI 250
           S+      Q    +  +IK   K      + +     K +                    
Sbjct: 177 SELVSLDRQDFDYSNLTIKLKGKGKKQRLIPITKNAAKWIQSYLLHIERYQNLETHSAES 236

Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELM 308
                F+N    ++        F    TK+G+    + H +R   AT   + G     + 
Sbjct: 237 DSNAIFLNKWGTRLTTRSVDRKFDLYLTKSGLAGKVTPHTIRHTIATHWLENGMDLKTIQ 296

Query: 309 ATYGWKTVDQAETYTKGADRIR 330
              G +++     YT+ + +++
Sbjct: 297 LLLGHRSLSTTTIYTQVSTKLK 318


>gi|42526714|ref|NP_971812.1| integrase/recombinase XerD [Treponema denticola ATCC 35405]
 gi|41817029|gb|AAS11723.1| integrase/recombinase XerD [Treponema denticola ATCC 35405]
          Length = 274

 Score =  130 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 41/254 (16%), Positives = 88/254 (34%), Gaps = 26/254 (10%)

Query: 96  ESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI 155
           E   D +I  + + D          SG+ ++     +  + + ++   F++ + +     
Sbjct: 6   EHMSDSLIENATEADCIDFILHRSESGIMAK-----TIAKDIAALNSFFRFLIIEGVRKD 60

Query: 156 NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCR 211
           NP  S+ERPKR+    R  + +++    +     S    + R  FE +  +GLR S+   
Sbjct: 61  NPSESIERPKREKTLPRVLSPDEVDSLFAAIPLDSPNNIRDRALFELIYSAGLRVSEIVN 120

Query: 212 AGVQHL--QNNIFSIKTQKTGTIITVE-----------LPDGFMKLLAMTPIGK----ET 254
             ++ +    ++  +  +     I              + +   +LL            +
Sbjct: 121 LKMEDIFYDEDLIKVTGKGNKERIVPFGSAAKYWLKQYILEARTELLKPKHPENTLISGS 180

Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWK 314
            F+NN    +            +  +G+    H +R   AT     GA    +    G  
Sbjct: 181 VFLNNRGAVLTRKGIWKRINELSNFSGIETKVHTLRHSYATHLLAGGADLRSVQCLLGHS 240

Query: 315 TVDQAETYTKGADR 328
            +   + YT   D+
Sbjct: 241 DISTTQVYTHIEDK 254


>gi|312130418|ref|YP_003997758.1| tyrosine recombinase xerd [Leadbetterella byssophila DSM 17132]
 gi|311906964|gb|ADQ17405.1| tyrosine recombinase XerD [Leadbetterella byssophila DSM 17132]
          Length = 296

 Score =  130 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 48/270 (17%), Positives = 92/270 (34%), Gaps = 25/270 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHIRSGVE---SRKHTPSSAIQFLTSM 140
             LA NS  S+      +     G      +   H+ + +E       + S+  + L+ +
Sbjct: 18  RGLAPNSVESYLRDLGALASFLDGKVAPNTVEEDHLYAFIETISEMGLSSSTQARMLSGI 77

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FWSEGSQPRLAF 196
           +  F++   ++    +P   +  PK   +       ++++           EG++ R   
Sbjct: 78  KAFFEFLRLEKIRDTDPTALLVGPKLIRKLPEVLQVKEVEALLEGIDLSTPEGTRNRAML 137

Query: 197 EFLLYSGLRCSDSCRAGVQH--LQNNIFSIKTQKTGTIITVELPDGF-----------MK 243
           E L  SGLR S+     +     +     ++  K      V +                 
Sbjct: 138 EVLYSSGLRVSEVVNLQISRCFFEEGYLQVR-GKGSKTRLVPIGKQAIHYTEIYKTLVRP 196

Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301
            L +    ++  F+N     ++        K  A  AG+ K  S H +R   AT   + G
Sbjct: 197 SLDIKKGYEDHLFLNRRGAALSRVMVFYVVKNAAEAAGIQKTISPHTLRHSFATHLVEGG 256

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRL 331
           A    +    G +++   E YT   DR  L
Sbjct: 257 ADLRAVQEMLGHESILTTEIYTH-LDRAFL 285


>gi|91202076|emb|CAJ75136.1| similar to site-specific tyrosine recombinase [Candidatus Kuenenia
           stuttgartiensis]
          Length = 351

 Score =  130 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 56/266 (21%), Positives = 101/266 (37%), Gaps = 14/266 (5%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH- 128
           T K L+  + K  H   +++N + S+ +    ++   GD     IT K +     SRK+ 
Sbjct: 57  TFKDLMERFMKE-HAPKVSLNMQKSYTTSAKHLLSFFGDLSLLAITPKKVNDYKVSRKNL 115

Query: 129 --TPSSAIQFLTSMRVLFKWAV-RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
              P++  + L  +   F  AV   E++  NP   + + K   E  R  + ++ ++    
Sbjct: 116 GKKPATINKELAMLSKAFCLAVKEWEWIRDNPASKISKEKEANERDRWLSDDEEKRLLEN 175

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVEL----PD 239
             E     + F+  L++GLR  +        +     +  I+  K G   T+ L     D
Sbjct: 176 SPEWLSDIIVFD--LHTGLRQDELLSLTWDRVDLFRKVIIIQESKNGKPRTIPLNQISLD 233

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISA 298
             M+   +  +  +  F ++   KMN       F     KA + N   H VR   AT  A
Sbjct: 234 ILMEKTKVRSLKGDFVFPSSVMTKMNRRNLVRAFDIAKEKASIQNFHFHDVRHCFATRLA 293

Query: 299 DAGATAHELMATYGWKTVDQAETYTK 324
             G   + +    G   +   + Y  
Sbjct: 294 QRGVDIYRISKLLGHLNITMTQRYAH 319


>gi|224369851|ref|YP_002604015.1| site-specific recombinase XerD (DNA replication, recombination and
           repair) [Desulfobacterium autotrophicum HRM2]
 gi|223692568|gb|ACN15851.1| site-specific recombinase XerD (DNA replication, recombination and
           repair) [Desulfobacterium autotrophicum HRM2]
          Length = 297

 Score =  130 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 44/279 (15%), Positives = 96/279 (34%), Gaps = 28/279 (10%)

Query: 74  LISEYRKS-AHWGSLAVNSRISFESYFDQIIR-KSGDFDYRKITT--------------- 116
           +++++ ++ +     + ++  ++       +           IT                
Sbjct: 2   VVTQFLQTLSSEKGYSPHTIRAYGGDLTAFLGFCFPGKPVAAITDEQLLKEIRDSETNPV 61

Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
           +     +  +K T  +  + L++++  F + V    + +NP   V  PK      +  T 
Sbjct: 62  RGFLMDLAKKKVTRRTISRRLSALKSFFNYLVVVGKIEVNPAQGVSAPKLPRSIPQFLTV 121

Query: 177 EDM----QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
           +++       K+      + R  FE    +G+R S+     V  +      ++ +  G  
Sbjct: 122 DELFTLLDSIKTRTVVDKRNRAVFELFYSTGMRVSELSNLNVGDIDRESHLVRVRGKGNR 181

Query: 233 -ITVELPDGFMKLLA--MTPIGKE--TFFINNDKQKMNATQFSIWFKAKATKAGV--NKS 285
              V + D  +K +    T I  E    F+N D  + + +             G+    S
Sbjct: 182 ERLVPVGDRALKAVDDYRTCIDGEFGALFLNRDAHRFSDSSIRRVLSVLVKACGLGVPVS 241

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            H +R   AT   DAGA    +    G  ++   + YT 
Sbjct: 242 PHTLRHSFATHMLDAGADLRGIQEILGHASLSSTQIYTH 280


>gi|312876773|ref|ZP_07736752.1| tyrosine recombinase XerD [Caldicellulosiruptor lactoaceticus 6A]
 gi|311796504|gb|EFR12854.1| tyrosine recombinase XerD [Caldicellulosiruptor lactoaceticus 6A]
          Length = 291

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 100/278 (35%), Gaps = 23/278 (8%)

Query: 74  LISEYRKSAHWGSL-AVNSRISFESYFDQIIRKSGDFDYRKITTK-----HIRSGVESRK 127
           +I  +       +  + N+  S+     + I    +   +   T           ++   
Sbjct: 3   IIEAFGNHLQRQNRFSQNTISSYLRDAKKYIEFLDNIKIKLENTSQATLIAYIISMQKSG 62

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            + S+ ++ + S++V + +   Q  V I   + +E PK +    +  T++++++  S   
Sbjct: 63  KSNSTIVRAIVSLKVFYDFLKTQNIVDIG-KIEIEPPKLEKSPPQILTRDEVEKLLSCPK 121

Query: 188 E----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
           E    G + +   E L  +G+R S+     +  +      I  +       + +    + 
Sbjct: 122 EDDIKGIRDKAMLELLYATGIRVSELINLNLDDINLEHGYIICKNKKRDRVIPIGSYAIS 181

Query: 244 LLAMTPI----------GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRK 291
            +                +E  F+N + ++M    F    K  A  AG++K  + H +R 
Sbjct: 182 AVERYLRHSRPYLAKNKDEEALFLNFNGERMTRQGFWKIVKFYAQSAGIDKEITPHVLRH 241

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             AT   + GA    +    G   +   + Y + A+  
Sbjct: 242 SFATHLIENGADVRAVQQMLGHADISTTQRYLQVANVK 279


>gi|259046718|ref|ZP_05737119.1| integrase/recombinase XerC [Granulicatella adiacens ATCC 49175]
 gi|259036614|gb|EEW37869.1| integrase/recombinase XerC [Granulicatella adiacens ATCC 49175]
          Length = 318

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 41/265 (15%), Positives = 89/265 (33%), Gaps = 25/265 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRK------ITTKHIRSGVESRKHTPSSAIQFLT 138
              +  +  ++E           +           +  +     +    +  SS  +FL+
Sbjct: 17  RRYSPETIHAYERDIQHFCDYLTEVPITSWNDVSVVDVRIYLGVLHRENYNRSSISRFLS 76

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRL 194
           S+R  + + V ++ V  NP  SV   K K      + ++++++F +          + + 
Sbjct: 77  SLRSFYHFLVERKAVESNPFASVSYKKGKMLLPEFFYEDEIEKFINSIDGNQSLDQRNKA 136

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPD------------GF 241
             E L  +G+R S+     ++ L  +N   +   K      V + D            G 
Sbjct: 137 LVEVLYATGMRVSELTNLTLEQLDLDNSIILVIGKGSKERYVPIGDFARTALETYLEEGR 196

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISAD 299
             L+A         F+N+    +         +    ++G+      H +R   AT   +
Sbjct: 197 KDLMAKERKEHFFVFVNHLGDPLTTNGVRYILEKLIQESGLTLKIHPHMLRHTFATHLLN 256

Query: 300 AGATAHELMATYGWKTVDQAETYTK 324
            GA    +    G  ++   + YT 
Sbjct: 257 NGADMRTVQELLGHVSLSSTQIYTH 281


>gi|116328373|ref|YP_798093.1| site-specific recombinase XerD [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116331099|ref|YP_800817.1| site-specific recombinase XerD [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|116121117|gb|ABJ79160.1| Site-specific recombinase XerD [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116124788|gb|ABJ76059.1| Site-specific recombinase XerD [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 298

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 42/266 (15%), Positives = 95/266 (35%), Gaps = 22/266 (8%)

Query: 85  GSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVES---RKHTPSSAIQFLTS 139
             L+ NS  S+    ++     +    D+ K+    I   +     RK +  +  + + +
Sbjct: 20  KGLSDNSIYSYGYDLNKFKNFLEKEHIDFLKVQANDIMRFLNEERDRKISSKTIAREVVA 79

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLA 195
           +R  +K+   ++ +  NP   +E P+         T++++++  +   E      + +  
Sbjct: 80  IRQFYKFLKDEKKLDTNPTEKIETPEVMRNIPDYLTQDEIEELFASIREDNLYELRDKCI 139

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAM------- 247
           FE L  SGLR S++C   +  +    +      K G    V   +  + ++         
Sbjct: 140 FELLYSSGLRISEACNLRLSDMDLEGMILTVEGKGGRQRLVPFGEKSLDIMNRYLKQSRP 199

Query: 248 ---TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302
                   E  F++     +N             +  ++K  + H +R   AT   +  A
Sbjct: 200 FILKARNCEYLFVSKKGSYINRKSVWRLLNHYIKRTSISKKVTPHTLRHSFATHLLENHA 259

Query: 303 TAHELMATYGWKTVDQAETYTKGADR 328
               +    G   +   + YT  A++
Sbjct: 260 DLKSVQELLGHIDISTTQIYTHMANK 285


>gi|297516448|ref|ZP_06934834.1| Phage integrase family protein [Escherichia coli OP50]
          Length = 356

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 63/343 (18%), Positives = 116/343 (33%), Gaps = 25/343 (7%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHE---STFIPAYMSALTGSTPKREYINS 63
           LPP +     R+     Y     G+   L        +  I A +   +G   K      
Sbjct: 12  LPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLTARI 68

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
                 TL   +  Y K      +   + I++ S    I R   D     ITTK I + +
Sbjct: 69  NSDNSVTLHSWLDRYEKILASREIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAML 128

Query: 124 ESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
                K   +SA    +++   F+ A+ + ++  NP  +    K +    R    E ++ 
Sbjct: 129 NGYIDKGKAASAKLIRSTLSDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEYLKI 188

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE----- 236
           +++  S     RLA E  + +G R  D C      + +    ++  KTG  I +      
Sbjct: 189 YQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTTLHV 248

Query: 237 ----LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NKSAH 287
               +            +G ET   +  ++ +++   S +F      +G+       + H
Sbjct: 249 DALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPPTFH 308

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
            +R   +    +   +        G K+   A  Y    DR R
Sbjct: 309 ELR-SLSARLYEKQISDKFAQHLLGHKSDTMASQY--RDDRGR 348


>gi|323701841|ref|ZP_08113511.1| tyrosine recombinase XerC [Desulfotomaculum nigrificans DSM 574]
 gi|323533145|gb|EGB23014.1| tyrosine recombinase XerC [Desulfotomaculum nigrificans DSM 574]
          Length = 300

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 42/271 (15%), Positives = 93/271 (34%), Gaps = 26/271 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKS--------GDFDYRKITTKHIRSGVESRKHT---PSSA 133
            + + ++  +++    + I                 +I ++  R+ +   +      S+ 
Sbjct: 16  KNFSDHTIEAYQKDLFEGIDFFSTVLNVCDEKLHPSQIDSRLFRNFLSHMQERNLQRSTI 75

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS---FWSEGS 190
            + L + R  F++  R+  V  NP L +  PK++    +   +++ ++          G 
Sbjct: 76  ARRLAAWRTFFRFLYREGLVQTNPLLRMANPKQEKRLPKFLYQDEAKELVESPGNTPLGV 135

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM-- 247
           + R   E L  +G+R S+     + HL  +   ++   K      V + D  +  L    
Sbjct: 136 RDRSLLELLYATGIRVSELVALDLYHLDLSRGYLRVWGKGSKERLVPIHDRAVAALKRYL 195

Query: 248 -------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISA 298
                          F+N    +++             + G+ K  S H +R   AT   
Sbjct: 196 TEARPKLAQPDCPAVFVNYKGSRLSDRGVRKLIDKYCQQVGLTKNISPHVIRHSFATHLL 255

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRI 329
           D GA    +    G  ++   + YT    + 
Sbjct: 256 DNGADLRSVQELLGHVSLSTTQIYTHVTKQK 286


>gi|157144439|ref|YP_001451758.1| site-specific tyrosine recombinase XerC [Citrobacter koseri ATCC
           BAA-895]
 gi|157081644|gb|ABV11322.1| hypothetical protein CKO_00153 [Citrobacter koseri ATCC BAA-895]
          Length = 300

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 41/259 (15%), Positives = 86/259 (33%), Gaps = 19/259 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRKHTPSSAIQFLT 138
             L+  + ++++   D II  +G+   +          +        +   P+S    L+
Sbjct: 21  RQLSPITLLNYQRQLDAIIALAGETGLQSWQQCDAAMVRAFAVRSRRKGLGPASLALRLS 80

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLA 195
           ++R  F W V Q  +  NP   V  PK      +    +D+ +            + R  
Sbjct: 81  ALRSFFDWLVSQGELNANPAKGVSAPKAPRHLPKNIDVDDINRLLDIDLNDPLAVRDRAM 140

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLAMT------ 248
            E +  +GLR S+     ++HL  +        K      + +    +  +         
Sbjct: 141 LEVMYGAGLRLSELVGLDIKHLDLDTGEVWVMGKGSKERRLPIGRNAVAWIEHWLDLRGL 200

Query: 249 -PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAH 305
                +  F++   ++++A      F     K G+N     H +R   AT   ++     
Sbjct: 201 FGSDDDALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVHPHKLRHSFATHMLESSGDLR 260

Query: 306 ELMATYGWKTVDQAETYTK 324
            +    G   +   + YT 
Sbjct: 261 GVQELLGHANLSTTQIYTH 279


>gi|254293092|ref|YP_003059115.1| integrase family protein [Hirschia baltica ATCC 49814]
 gi|254041623|gb|ACT58418.1| integrase family protein [Hirschia baltica ATCC 49814]
          Length = 381

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 65/346 (18%), Positives = 123/346 (35%), Gaps = 24/346 (6%)

Query: 15  RTRH-GKIIYYF--R-KGHGRRIRLPYPHESTFIPAYMSALT-----GSTPKREYINSPR 65
           R R  G+  Y+   R KG  RRI +      T   A   A +      S        +  
Sbjct: 31  RIRKSGRKSYFVMSRYKGRMRRITIGQHGPLTAEDARKQAKSILHDLSSGIDPTEDKTKI 90

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE 124
           ++  T+K L   +        L  ++   ++   +  I+ K G    + ++ + I +   
Sbjct: 91  RQSGTVKKLCERFMIEYVPQHLKPSTASEYKRSIEIFILPKLGRLIVKDVSRQDIIALHH 150

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPWTKEDMQQF 182
             + TP  A + L  + +LF  A          NPC  +++ + +    R  + E++Q+ 
Sbjct: 151 DMRGTPYQANRTLGVLSILFSQAEVWGLRDEFTNPCRGIKKFREEKRE-RFLSLEELQRL 209

Query: 183 -KSFWSE---GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVE 236
            ++   E           + L+ +G R  +  +    H+  +     +   KTG   T+ 
Sbjct: 210 GRALHEETALAPSAVACIKLLILTGCRLGEIQKLKWVHVDLDRQLLLLPDSKTGKK-TIY 268

Query: 237 LPDGFMKLLAMTPIG-KETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSA 294
           L    + LL  TP      F I   KQ    T     ++     A + +   H +R   A
Sbjct: 269 LGTSAVDLLKSTPRQLDNPFVIAGYKQGQYLTDLQKPWRRIRKAANLEDVRIHDLRHTYA 328

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
           + +   G +   +    G         Y   AD     ++ + +IS
Sbjct: 329 STAVANGESLPMIGKLLGHSQPQTTARYAHLADIQ--AVEVADKIS 372


>gi|239627800|ref|ZP_04670831.1| phage integrase [Clostridiales bacterium 1_7_47_FAA]
 gi|239517946|gb|EEQ57812.1| phage integrase [Clostridiales bacterium 1_7_47FAA]
          Length = 331

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 47/260 (18%), Positives = 92/260 (35%), Gaps = 13/260 (5%)

Query: 83  HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----SRKHTPSSAIQFLT 138
            + + +V++   ++ +   ++   G    ++I  + +   +     +RK + S+      
Sbjct: 64  RFENYSVSTVNQYQRFLTDLLIYVG-KPVQEIAGEDVVECLNYYEQARKISSSTKDHKRR 122

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEF 198
                F +   + Y++ NP  +V+  K   E     T  ++++ +       +     E 
Sbjct: 123 IASSFFTFLHERGYISKNPMSTVDPIKYVAEIREALTSREVEKLRIACGTNIRDNAVLEL 182

Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM--TPIGKETF 255
            L SG R S+     V+ +       K   K      V   D  M+ L            
Sbjct: 183 FLASGCRVSEVVSMRVEDMDLQAGCGKVLGKGKKERMVFFNDRAMEYLERYLGDRRSGAV 242

Query: 256 FINND--KQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATY 311
            ++     Q +         +  A KAG+ K    H +R   AT + + G     L    
Sbjct: 243 ILSKRAPYQGLKKNALENIIRKIAKKAGLGKRVFPHLLRHTFATRALNKGMPLPTLCDLM 302

Query: 312 GWKTVDQAETYTK-GADRIR 330
           G  +V+    Y K GA +IR
Sbjct: 303 GHSSVETTRIYAKNGAGKIR 322


>gi|218961949|ref|YP_001741724.1| site-specific recombinase, phage integrase family [Candidatus
           Cloacamonas acidaminovorans]
 gi|167730606|emb|CAO81518.1| site-specific recombinase, phage integrase family [Candidatus
           Cloacamonas acidaminovorans]
          Length = 298

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 48/276 (17%), Positives = 96/276 (34%), Gaps = 25/276 (9%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIR------KSGDFDYRKITTKHIRSGVESRK 127
            I+++         +  +  +++   +Q         ++G+ D + IT  +IR       
Sbjct: 4   YIADFCNYLALEGKSPRTITAYKLDLEQFHSFIQRYFENGEVDIKGITVLNIRDFFRFLN 63

Query: 128 HTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
             P    S  +   ++   F++  R  ++  NP   ++RPK +    + +T+E+++   S
Sbjct: 64  EKPDCNRSLARKSAALNSFFRYCKRSGFIQNNPMEKIKRPKYEVPLPKCFTEEEVRTLLS 123

Query: 185 FW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-ELPD 239
                   G + +   E L  SGLR S+     +Q +      ++    G    +  L  
Sbjct: 124 IPDTDSPFGIRNKAILETLYSSGLRISELAGIRLQDIDLKRGLVRVTGKGNKQRIVPLGS 183

Query: 240 GFMKLLAMTPIGKETF---------FINNDKQKMNATQFSIWFKAK--ATKAGVNKSAHG 288
             ++ +      +  F         F+    +  +  Q  I  K            S H 
Sbjct: 184 YAIEAINNYLKVRPQFMRENSPDLLFLTKSGKAFDTKQLDIILKRYFELVAKAKGYSPHS 243

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +R   AT     GA    +    G   +   ETYT 
Sbjct: 244 LRHSFATHLLSRGADLRAIQELLGHSLLSTTETYTH 279


>gi|38233776|ref|NP_939543.1| site-specific tyrosine recombinase XerD [Corynebacterium
           diphtheriae NCTC 13129]
 gi|38200037|emb|CAE49713.1| integrase/recombinase [Corynebacterium diphtheriae]
          Length = 311

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 51/299 (17%), Positives = 101/299 (33%), Gaps = 37/299 (12%)

Query: 69  TTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGVE 124
            ++  +  ++         ++ N+  ++    ++    ++  G  D   I+ + I   V+
Sbjct: 2   GSISNIARQWLTHLAVEKGVSDNTLSNYRRDLERYTRWLQVQGITDIENISAQDIERYVQ 61

Query: 125 SRKHTPSSAIQFLT----------SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
             +   S   +               R L ++A+ +  V  +    V  P          
Sbjct: 62  ELRKGDSDTGKKPLAASSAARALIVARGLHRFALLENLVENDVSADVSPPAMGRHLPDTL 121

Query: 175 TKEDMQQF-------KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFS 223
           + E++ +         +   E  +     EFL  +G R S++    V  +    +N    
Sbjct: 122 SVEEVNRLIEAIPIDDAASPENLRDCALLEFLYATGARISEAVGLVVDDVAAIVENEGIV 181

Query: 224 IKTQKTGTIITVELPDGFMKLL---------AMTPIGKETFFINNDKQKMNATQFSIWFK 274
             T K      V + D  +  L         AM+       F+N    +++        K
Sbjct: 182 RITGKGNKQRIVPVGDQCLSALERYVVRSRPAMSKGKSHALFLNKRGGQLSRQSAWQILK 241

Query: 275 AKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330
             A +AG+ K  S H +R   AT   + GA    +    G  +V   + YT   AD +R
Sbjct: 242 NSAQRAGIEKDISPHTLRHSFATHLLEGGADVRVVQELLGHSSVTTTQIYTHVTADNLR 300


>gi|197262705|ref|ZP_03162779.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|197240960|gb|EDY23580.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
          Length = 300

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 43/259 (16%), Positives = 90/259 (34%), Gaps = 19/259 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRKHTPSSAIQFLT 138
             L+  + ++++   D II  +G+   +          +        +   P+S    L+
Sbjct: 21  RQLSPITLLNYQRQLDAIIALAGETGLKSWQQCDAAIVRSFAVRSRRKGLGPASLALRLS 80

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WSEGSQPRLA 195
           ++R  F W V Q  +  NP   V  PK      +    +D+ +            + R  
Sbjct: 81  ALRSFFDWLVSQGELKANPAKGVSAPKAPRHLPKNIDVDDVNRLLDIDLNDPLAVRDRAM 140

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT--------VELPDGFMKLLAM 247
            E +  +GLR S+     ++HL  +   +     G+           V   + ++ L  +
Sbjct: 141 LEVMYGAGLRLSELVGLDIKHLDLDTGEVWVMGKGSKERRLPIGRNAVTWIEHWLDLRGL 200

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAH 305
               +E  F++   ++++       F     K G+N     H +R   AT   ++     
Sbjct: 201 FASDEEALFLSKLGKRISVRNVQKRFAEWGIKQGLNSHVHPHKLRHSFATHMLESSGDLR 260

Query: 306 ELMATYGWKTVDQAETYTK 324
            +    G   +   + YT 
Sbjct: 261 GVQELLGHANLSTTQIYTH 279


>gi|289578559|ref|YP_003477186.1| integrase [Thermoanaerobacter italicus Ab9]
 gi|289528272|gb|ADD02624.1| integrase family protein [Thermoanaerobacter italicus Ab9]
          Length = 398

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 71/353 (20%), Positives = 126/353 (35%), Gaps = 50/353 (14%)

Query: 26  RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG 85
           RK + + I++    ES  +      L     + E          T K  I ++ K     
Sbjct: 27  RKRYTKTIKVYGKSESAKLKEAEKELAKFVAEIEGNLFVEPSKLTFKAFIEKWLKEYAEN 86

Query: 86  SLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH------------TPSS 132
           +LA  +   ++   + +II   G     KI   H+   +   K             +P +
Sbjct: 87  NLAPKTLHRYKEMLEKRIIPALGHLKLDKIKPIHVLEFLNMLKEDGARLDGKEGGLSPQT 146

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF-KSFWSEGSQ 191
                  +  +F+ AV+ + +  NP  ++E PK   +    + +E++++  K+  +E  +
Sbjct: 147 IKHHYRLIHAIFEDAVKWQLIPSNPASNIEPPKVPKKEAGYYNEEEVRKLIKALENEKLK 206

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ--------------KTG-TIIT 234
            ++A    L +GLR  +      +H+   NNI  I+                KT  +   
Sbjct: 207 YKVAVMVTLAAGLRIGELMGLKWEHIDFENNIIKIEQANQYLPGEGTFTKNPKTETSKRL 266

Query: 235 VELPDGFMKLLAMTP--------------IGKETFFINNDKQKMNATQFSIWFKAKATKA 280
           + +P   M LL                  I     F   + Q M    F+ WF     K 
Sbjct: 267 IAMPKEIMDLLREYKKEQNIERLKKGSMWIDTGYVFTQWNGQPMYPYTFTKWFPKFLEKH 326

Query: 281 GVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYT---KGADR 328
           G+ + + H +R  SAT+  +AG     + A  G          Y    K ADR
Sbjct: 327 GLRRITFHQLRHTSATLLINAGENVRTVSARLGHSNTSTTMNIYAHALKSADR 379


>gi|218442340|ref|YP_002380665.1| hypothetical protein PCC7424_5613 [Cyanothece sp. PCC 7424]
 gi|218175444|gb|ACK74172.1| hypothetical protein PCC7424_5613 [Cyanothece sp. PCC 7424]
          Length = 273

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 48/242 (19%), Positives = 94/242 (38%), Gaps = 8/242 (3%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFK 145
           +  + IS++ +  Q +   G    R +T   +   V     T  P +    + +++ LF 
Sbjct: 22  SKTTVISYQCHVKQFLEFVG-KPLRDVTLDDLSLWVNRLNLTYQPVTVANKILTVKSLFS 80

Query: 146 WAVRQEYVAINPCLSVERPKRK-TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGL 204
           +A R  Y+ +N    ++ PK K T   R     ++++  +      +  +    +   GL
Sbjct: 81  FACRVGYLTVNVGSFIKSPKLKDTLAERILDPSEVKRLINAAP-NERDSVLLSLMYGCGL 139

Query: 205 RCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM 264
           R S+ C      L+N   ++  +   T I + +P      L   P   E  F++    ++
Sbjct: 140 RVSEVCGLNWSDLKNGKATVFGKGAKTRIVI-IPPNLWDRLMKLPRDGEAVFMSRRGNRL 198

Query: 265 NATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
             T      K     +GV    S+H +R   A+ + +AG     L  + G   ++  E Y
Sbjct: 199 ERTYIHKMIKECCHLSGVSEKASSHWLRHSHASHAVEAGCNLRLLQQSLGHSKLETTEKY 258

Query: 323 TK 324
             
Sbjct: 259 LH 260


>gi|87307014|ref|ZP_01089160.1| integrase/recombinase [Blastopirellula marina DSM 3645]
 gi|87290387|gb|EAQ82275.1| integrase/recombinase [Blastopirellula marina DSM 3645]
          Length = 300

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 45/266 (16%), Positives = 93/266 (34%), Gaps = 26/266 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDF--------DYRKITTKHIRSGVESRKHTPSSAIQF 136
            + +  +  S+    + ++    +         +   +  +   + V    +  ++  + 
Sbjct: 16  RNASDLTIKSYGEDLEALVDYLEELYAAPASTGEVSTLDLRGYVAAVSDAGYAETTVSRR 75

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQP 192
           L SMR  F++A R+E +  +P   +  P+RK +     T +++ +  S        G + 
Sbjct: 76  LASMRSFFRFAQREELIDRSPAKPLRNPRRKRKLPHFLTGDEISKLLSAPPANTSAGLRD 135

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMK 243
           R  FE    +GLR S+        +      I+ +  G    +          L D   +
Sbjct: 136 RAIFETTYSAGLRVSELVGLNDSDIDAEQGLIRIRGKGKRERLGPLGSYAIKALHDWLSQ 195

Query: 244 ---LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISA 298
                      ++  F N    ++         +     AG++   S H +R   AT   
Sbjct: 196 RTLSARAAAAKEKPVFTNKFGNRLTTRSVGRMLEKYIAIAGLDTRTSPHTLRHSFATHLL 255

Query: 299 DAGATAHELMATYGWKTVDQAETYTK 324
           DAGA    +    G K++   + YT 
Sbjct: 256 DAGADIRSVQELLGHKSLVTTQIYTH 281


>gi|16767219|ref|NP_462834.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|167553868|ref|ZP_02347612.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|167993887|ref|ZP_02574980.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|168233881|ref|ZP_02658939.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|168822681|ref|ZP_02834681.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|194470289|ref|ZP_03076273.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|197251815|ref|YP_002148873.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|224585764|ref|YP_002639563.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|238912952|ref|ZP_04656789.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|2497413|sp|P55888|XERC_SALTY RecName: Full=Tyrosine recombinase xerC
 gi|1916339|gb|AAC45778.1| site-specific recombinase [Salmonella enterica subsp. enterica
           serovar Typhimurium]
 gi|6960253|gb|AAF33443.1| S. typhimurium site-specific recombinase (XERC) (SP:P55888);
           contains similarity to Pfam family PF00589 ('Phage'
           integrase family), score=227.1, E=2.5e-64, N=1
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|16422513|gb|AAL22793.1| putative site-specific integrase/recombinase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|194456653|gb|EDX45492.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|197215518|gb|ACH52915.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|205321790|gb|EDZ09629.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|205328137|gb|EDZ14901.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|205332099|gb|EDZ18863.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|205340961|gb|EDZ27725.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|224470292|gb|ACN48122.1| tyrosine recombinase [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|261249072|emb|CBG26933.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|267996228|gb|ACY91113.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301160464|emb|CBW19994.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|312915067|dbj|BAJ39041.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|320088359|emb|CBY98119.1| Tyrosine recombinase xerC [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
 gi|321225467|gb|EFX50524.1| Tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
 gi|323132296|gb|ADX19726.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
          Length = 300

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 44/259 (16%), Positives = 91/259 (35%), Gaps = 19/259 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRKHTPSSAIQFLT 138
             L+  + ++++   D II  +G+   +          +        +   P+S    L+
Sbjct: 21  RQLSPITLLNYQRQLDAIIALAGETGLKSWQQCDAAIVRSFAVRSRRKGLGPASLALRLS 80

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WSEGSQPRLA 195
           ++R  F W V Q  +  NP   V  PK      +    +D+ +            + R  
Sbjct: 81  ALRSFFDWLVSQGELKANPAKGVSAPKAPRHLPKNIDVDDVNRLLDIDLNDPLAVRDRAM 140

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT--------VELPDGFMKLLAM 247
            E +  +GLR S+     ++HL  +   +     G+           V   + ++ L  +
Sbjct: 141 LEVMYGAGLRLSELVGLDIKHLDLDTGEVWVMGKGSKERRLPIGRNAVTWIEHWLDLRGL 200

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAH 305
               +E  F++   ++++A      F     K G+N     H +R   AT   ++     
Sbjct: 201 FASDEEALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVHPHKLRHSFATHMLESSGDLR 260

Query: 306 ELMATYGWKTVDQAETYTK 324
            +    G   +   + YT 
Sbjct: 261 GVQELLGHANLSTTQIYTH 279


>gi|56415803|ref|YP_152878.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197364733|ref|YP_002144370.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|56130060|gb|AAV79566.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197096210|emb|CAR61807.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
          Length = 300

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 44/259 (16%), Positives = 91/259 (35%), Gaps = 19/259 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRKHTPSSAIQFLT 138
             L+  + ++++   D II  +G+   +          +        +   P+S    L+
Sbjct: 21  RQLSPITLLNYQRQLDAIIALAGETGLKSWQQCDAAIVRSFAVRSRRKGLGPASLALRLS 80

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WSEGSQPRLA 195
           ++R  F W V Q  +  NP   V  PK      +    +D+ +            + R  
Sbjct: 81  ALRSFFDWLVSQGELKANPAKGVSAPKAPRHLPKNIDVDDVNRLLDIDLNDPLAVRDRAM 140

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT--------VELPDGFMKLLAM 247
            E +  +GLR S+     ++HL  +   +     G+           V   + ++ L  +
Sbjct: 141 LEVMYGAGLRLSELVGLDIKHLDLDTGEVWVMGKGSKERRLPIGRNAVTWIEHWLDLRGL 200

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAH 305
               +E  F++   ++++A      F     K G+N     H +R   AT   ++     
Sbjct: 201 FASDEEALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVHPHKLRHSFATHMLESSGDLR 260

Query: 306 ELMATYGWKTVDQAETYTK 324
            +    G   +   + YT 
Sbjct: 261 GVQELLGHANLSTTQIYTH 279


>gi|312622379|ref|YP_004023992.1| integrase family protein [Caldicellulosiruptor kronotskyensis 2002]
 gi|312202846|gb|ADQ46173.1| integrase family protein [Caldicellulosiruptor kronotskyensis 2002]
          Length = 328

 Score =  130 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 47/286 (16%), Positives = 97/286 (33%), Gaps = 43/286 (15%)

Query: 85  GSLAVNSRISFESYFDQI-----------------IRKSGDFDYRKITTKHIRSGVESR- 126
            + + N+   +                        I    + D      + +++   S  
Sbjct: 21  KNKSPNTIKEYYYDLRNFLRYLKAKDLNMLSQIEKIEDLENIDVSNFEIEKLKALTLSNL 80

Query: 127 -----------KHTPSSAIQFLTSMRVLFKWAV-RQEYVAINPCLSVERPKRKTEGIRPW 174
                       + P +  + + S+R  FK+   + + +  NP   +E PK      R  
Sbjct: 81  YEYFSFLATHFNNGPYARARKVASIRSFFKYLYSKAKLIPDNPAKDLESPKLGKRNPRYL 140

Query: 175 TKEDMQQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
           T ++ ++  S     ++ R        L  GLR S+     +  +++++  I  +     
Sbjct: 141 TLDESKKLLSAIDGENKERDFAIITIFLNCGLRLSELVNINLSDIKDDMLRIVGKGNKER 200

Query: 233 ITV---ELPDGFMKLLAMTPI----GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284
           I        D     L + P      K+  F++  K++++        +     AG+N+ 
Sbjct: 201 IIYLNKACKDAIENYLKVRPTEGVKDKDALFLSERKKRISRRTVQYIVEKYVKMAGINQK 260

Query: 285 --SAHGVRKFSATISADAGA-TAHELMATYGWKTVDQAETYTKGAD 327
             SAH +R  +AT+    G      L    G +++   E YT   D
Sbjct: 261 KISAHKLRHTAATLMYRHGKVDIRSLQTILGHQSISTTEIYTHVND 306


>gi|167628445|ref|YP_001678944.1| tyrosine recombinase xerd, putative [Heliobacterium modesticaldum
           Ice1]
 gi|167591185|gb|ABZ82933.1| tyrosine recombinase xerd, putative [Heliobacterium modesticaldum
           Ice1]
          Length = 328

 Score =  130 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 44/287 (15%), Positives = 96/287 (33%), Gaps = 34/287 (11%)

Query: 85  GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVE---SRKHTPSSAIQFLT 138
             L+ N+  ++      +   + + G  D   +T   ++  +     R  + ++  + L 
Sbjct: 38  RGLSGNTIDAYRRDLADLAAFLAERGIGDPADVTRSDLQDYLYHTYRRGLSAATRARRLA 97

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS---EGSQPRLA 195
           +++  F +   +     +P   ++ P+ +         E++            G + R  
Sbjct: 98  AIKGYFGFLFDEAIRRDDPTELIDGPRLQRLLPDVLNVEEVAALLQAPPRTIVGLRDRAM 157

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFMKLLA-------- 246
            E +   GLR S+     +  ++ ++  ++    G     V L       +         
Sbjct: 158 LETMYACGLRVSELIALTLDQVRLDLGLVRVVGKGMKERIVPLGGLAAAAIEEYLSRTRG 217

Query: 247 --MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302
                  ++  F+N   + +    F    KA A +AG+ K  + H +R   AT     GA
Sbjct: 218 TLAGHGAEKHLFLNQRGKPLTRQGFWKILKAYAAEAGIAKEVTPHTLRHSFATHLLSNGA 277

Query: 303 TAHELMATYGWKTVDQAETYT------------KGADRIRLGIKNSR 337
               +    G   V   + YT            +   R RL ++  R
Sbjct: 278 DLRAVQEMLGHADVSTTQIYTHLTMGRLREVYDRSHPRARLAVRAQR 324


>gi|313837516|gb|EFS75230.1| tyrosine recombinase XerD [Propionibacterium acnes HL037PA2]
 gi|314927276|gb|EFS91107.1| tyrosine recombinase XerD [Propionibacterium acnes HL044PA1]
 gi|314972722|gb|EFT16819.1| tyrosine recombinase XerD [Propionibacterium acnes HL037PA3]
 gi|328907874|gb|EGG27637.1| site-specific tyrosine recombinase XerD [Propionibacterium sp. P08]
          Length = 306

 Score =  130 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 41/268 (15%), Positives = 86/268 (32%), Gaps = 29/268 (10%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKI------TTKHIRSGVESRKHTPSSAIQFLT 138
             L+ N+  ++     +  +       R +        +  R  ++     P+S  + + 
Sbjct: 20  RGLSDNTVQAYRRDLLRYQKYLDSRGIRSLAEVTRVDVEEFRRYLDQLGLAPASVTRCVV 79

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRL 194
           ++R L  +AV       +    +    R     +  T E ++   +       EG +   
Sbjct: 80  AVRNLHHFAVESGQAKTDVTAGISPGTRSRRLPKALTMEQVEALLAAPDTSTVEGLRDTA 139

Query: 195 AFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKT-QKTGTIITVELPDGFMKLLAMTP 249
             E L  +G R S+ C   V  +     +    ++   K      V L     + +    
Sbjct: 140 LLELLYGTGARVSEVCALDVDDIRPVLDDPDLGLRLIGKGDKERIVPLGSYAAQAVDAWL 199

Query: 250 I-----------GKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSAT 295
           +           G+    +N   ++++        +     AG++    S H +R   AT
Sbjct: 200 VRGRPAWAQLGNGEHALLLNTRGRRLSRQSAWTVIRRAGEAAGLDVEHLSPHSLRHSYAT 259

Query: 296 ISADAGATAHELMATYGWKTVDQAETYT 323
              D GA    +    G  +V   + YT
Sbjct: 260 HLLDGGADIRVVQELLGHSSVTTTQIYT 287


>gi|225375588|ref|ZP_03752809.1| hypothetical protein ROSEINA2194_01213 [Roseburia inulinivorans DSM
           16841]
 gi|225212567|gb|EEG94921.1| hypothetical protein ROSEINA2194_01213 [Roseburia inulinivorans DSM
           16841]
          Length = 286

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 38/262 (14%), Positives = 85/262 (32%), Gaps = 22/262 (8%)

Query: 85  GSLAVNSRISFESYFDQII---RKSGDFDYRKITTK---HIRSGVESRKHTPSSAIQFLT 138
              + N+ +S+E    ++I      G      +T +        +E     P++  + + 
Sbjct: 18  KQTSENTEVSYERDLKKMILYLTAHGVDRIDAVTPEVLNSYVIELEQSGLKPATVSRSVA 77

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRL 194
           SM+  F +   ++  + +P   ++ PK + +     T E   +  +   +    G + + 
Sbjct: 78  SMKAFFHYEELEQRTSADPAFELKAPKVEKKAPTILTTEQTNRLLAQPKDNSAKGLRDKA 137

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254
             E L  +G+R S+     +  +  +   I    +     + +       L         
Sbjct: 138 MLELLYATGIRVSELISLKLTDVNFDTGYITCVDSHKGRMIPMTPVAKDALVRYIRDGRP 197

Query: 255 ----------FFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGA 302
                      F N     M+   F    K+   +AG+    + H +R   A     +GA
Sbjct: 198 QLVKDENSIWLFTNCSGDAMSRQGFWKLIKSYGKRAGIESEITPHMLRHSFAAHLVCSGA 257

Query: 303 TAHELMATYGWKTVDQAETYTK 324
               +    G   +   + Y  
Sbjct: 258 DLKSVQEILGHSDISTTQMYAH 279


>gi|330910760|gb|EGH39270.1| phage integrase [Escherichia coli AA86]
          Length = 357

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 61/341 (17%), Positives = 109/341 (31%), Gaps = 23/341 (6%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMS---ALTGSTPKREYINS 63
           LPP +     R+     Y     G+   L          A  +    L+ S  K      
Sbjct: 12  LPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELLSDSGRKSLIDRI 68

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
                 TL   +  Y        +   + + + S    I RK  D     I+TK + + +
Sbjct: 69  KGGDAITLHVWLDRYETILTERGIRPKTLLDYASKIRAIRRKLPDKPLTDISTKEVAAMI 128

Query: 124 ESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
            +   +   +SA    +++  +F+ A+ + +VA NP  +    K +    R    E ++ 
Sbjct: 129 NTYVAEGKAASAKLIRSTLVDVFREAIAEGHVATNPVTATRTAKSEVRRSRLTANEYVEI 188

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241
           + +        RLA +  + +G R  D CR     + +N   IK  KTG  + + L    
Sbjct: 189 YHAAKPLPIWLRLAMDLAVVTGQRVGDLCRMKWSDINDNHLHIKQSKTGAKLAIPLTLTI 248

Query: 242 MKL---------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NKSAH 287
             L                 ET   +     ++    S +F      +G+       + H
Sbjct: 249 DALNISLADTLQKCREASSSETIIASKHHDPLSPKTVSKYFTKARNASGLSFDGNPPTFH 308

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
            +R   +                 G K+   A  Y     R
Sbjct: 309 ELR-SLSARLYRNQIGDKFAQRLLGHKSDSMAARYRDSRGR 348


>gi|284920553|emb|CBG33615.1| integrase [Escherichia coli 042]
          Length = 356

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 61/343 (17%), Positives = 113/343 (32%), Gaps = 25/343 (7%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMS---ALTGSTPKREYINS 63
           LPP +     R+     Y     G+   L          A  +     +G   K      
Sbjct: 12  LPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLTARI 68

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
                 TL   +  Y K      +   + I++ S    I R   D     ITTK I + +
Sbjct: 69  NSDNSVTLHSWLDRYEKILANRGIKQKTLINYMSKIKAIRRGLPDAPLENITTKEIAAML 128

Query: 124 ESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
                    +SA    +++   F+ A+ + ++  NP  +    K +    R    E ++ 
Sbjct: 129 NGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEYLKI 188

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE----- 236
           +++  S     RLA E  + +G R  D C      + +    ++  KTG  I +      
Sbjct: 189 YQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTTLHV 248

Query: 237 ----LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NKSAH 287
               +            +G ET   +  ++ +++   S +F      +G+       + H
Sbjct: 249 DALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPPTFH 308

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
            +R   +    +   +        G K+   A  Y    DR R
Sbjct: 309 ELR-SLSARLYEKQISDKFAQHLLGHKSDTMASQY--RDDRGR 348


>gi|25028109|ref|NP_738163.1| site-specific tyrosine recombinase XerD [Corynebacterium efficiens
           YS-314]
 gi|259507166|ref|ZP_05750066.1| tyrosine recombinase XerD [Corynebacterium efficiens YS-314]
 gi|34222804|sp|Q7ZAN4|XERD_COREF RecName: Full=Tyrosine recombinase xerD
 gi|23493393|dbj|BAC18363.1| putative integrase/recombinase [Corynebacterium efficiens YS-314]
 gi|259165247|gb|EEW49801.1| tyrosine recombinase XerD [Corynebacterium efficiens YS-314]
          Length = 304

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 49/270 (18%), Positives = 88/270 (32%), Gaps = 30/270 (11%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTK----------HIRSGVESRKH-TPSSA 133
             L+ N+  S+    ++            I+             +R GV+ R   + SSA
Sbjct: 18  RGLSSNTLSSYRRDIERYCDWLEAARIGDISEIATATVEAYVMDLRRGVDGRAPLSASSA 77

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-------W 186
            + L  +R L K+A+ +  V ++    V  P          +  +++             
Sbjct: 78  GRALIVVRGLHKFALAEGLVGVDVAADVSPPSTGRHLPDTLSVPEVETLIDAIPTSDIAT 137

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-QNNIFSIKTQKTGTIITVE--------L 237
               + R   E L  +G R S++    V  +         T K      V         +
Sbjct: 138 PVDIRDRALLEVLYGTGARISEAVGLMVDDVTHTPEVLRITGKGSKQRMVPYGSMARAAV 197

Query: 238 PDGFMKLLAMTPIGK-ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSA 294
            D  ++       G+    F+N     ++        K  A +AG+ K  S H +R   A
Sbjct: 198 DDYLVRARPALSKGRTPVLFLNQRGGPLSRQSAWAALKKAAGRAGIAKDISPHTLRHSFA 257

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324
           T   + GA    +    G  +V   + YT 
Sbjct: 258 THLLEGGADVRVVQELLGHSSVTTTQIYTH 287


>gi|191166609|ref|ZP_03028438.1| integrase [Escherichia coli B7A]
 gi|190903414|gb|EDV63134.1| integrase [Escherichia coli B7A]
          Length = 357

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 61/341 (17%), Positives = 112/341 (32%), Gaps = 23/341 (6%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHE---STFIPAYMSALTGSTPKREYINS 63
           LPP +     R+     Y     G+   L        +  I A +  L+ S  K      
Sbjct: 12  LPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELLSDSGRKSLIDRI 68

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
                 TL   +  Y +      +   + + + S    I RK  D     I+TK + + +
Sbjct: 69  KGGDAITLHVWLDRYERILTERGIRPKTLLDYASKIRAIRRKLPDKPLTDISTKEVAAML 128

Query: 124 ESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
            +   +   +SA    +++  +F+ A+ + +VA NP  +    K +    R    E ++ 
Sbjct: 129 NTYVAEGKAASAKLIRSTLVDVFREAIAEGHVATNPVTATRTAKSEVRRSRLTANEYVEI 188

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241
           + +        RLA +  + +G R  D CR     + +N   I+  KTG  + + L    
Sbjct: 189 YHAAEPLPIWLRLAMDLAVVTGQRVGDLCRMKWSDINDNHLHIEQSKTGAKLAIPLTLTI 248

Query: 242 MKL---------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NKSAH 287
             L                 ET   +     ++    S +F      +G+       + H
Sbjct: 249 DALNISLADTLQKCREASSSETIIASKHHDPLSPKTVSKYFTKARNASGLSFDGNPPTFH 308

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
            +R   +                 G K+   A  Y     R
Sbjct: 309 ELR-SLSARLYRNQIGDKFAQRLLGHKSDSMAARYRDSRGR 348


>gi|62182418|ref|YP_218835.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|62130051|gb|AAX67754.1| putative integrase/recombinase, site-specific [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|322716911|gb|EFZ08482.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 300

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 44/259 (16%), Positives = 91/259 (35%), Gaps = 19/259 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRKHTPSSAIQFLT 138
             L+  + ++++   D II  +G+   +          +        +   P+S    L+
Sbjct: 21  RQLSPITLLNYQRQLDAIIALAGEAGLKSWQQCDAAIVRSFAVRSRRKGLGPASLALRLS 80

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WSEGSQPRLA 195
           ++R  F W V Q  +  NP   V  PK      +    +D+ +            + R  
Sbjct: 81  ALRSFFDWLVSQGELKANPAKGVSAPKAPRHLPKNIDVDDVNRLLDIDLNDPLAVRDRAM 140

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT--------VELPDGFMKLLAM 247
            E +  +GLR S+     ++HL  +   +     G+           V   + ++ L  +
Sbjct: 141 LEVMYGAGLRLSELVGLDIKHLDLDTGEVWVMGKGSKERRLPIGRNAVTWIEHWLDLRGL 200

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAH 305
               +E  F++   ++++A      F     K G+N     H +R   AT   ++     
Sbjct: 201 FASDEEALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVHPHKLRHSFATHMLESSGDLR 260

Query: 306 ELMATYGWKTVDQAETYTK 324
            +    G   +   + YT 
Sbjct: 261 GVQELLGHANLSTTQIYTH 279


>gi|312875927|ref|ZP_07735917.1| integrase family protein [Caldicellulosiruptor lactoaceticus 6A]
 gi|311797408|gb|EFR13747.1| integrase family protein [Caldicellulosiruptor lactoaceticus 6A]
          Length = 325

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 52/284 (18%), Positives = 105/284 (36%), Gaps = 22/284 (7%)

Query: 66  KKPTTLKWL---ISEYRKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRS 121
           K P T+K     +  + +      L + S+I      + I +        + +T  ++  
Sbjct: 23  KSPNTIKEYYYDLRTFLRYLKAKDLNILSQIEKIEDLENIDVSNFEIEKLKTLTLSNLYE 82

Query: 122 GVE----SRKHTPSSAIQFLTSMRVLFKWAV-RQEYVAINPCLSVERPKRKTEGIRPWTK 176
                     + P +  + + S+R  FK+   + + +  NP   +E PK      R  T 
Sbjct: 83  YFSFLATRFNNGPYARARKVASIRSFFKYLYSKAKLIPDNPAKDLESPKLGKRNPRYLTL 142

Query: 177 EDMQQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234
           ++ ++  S     ++ R        L  GLR S+     +  +++++  I  +     I 
Sbjct: 143 DESKKLLSSIDGENKERDFAIITLFLNCGLRLSELVNINLSDIKDDMLRIVGKGNKERII 202

Query: 235 V---ELPDGFMKLLAMTPI----GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--- 284
                  D     L + P      K+  F++  K++++        +     AG+N+   
Sbjct: 203 YLNKACKDAIENYLKVRPTEGVKDKDALFLSERKKRISRRTVQYIVEKYVKMAGINQKKI 262

Query: 285 SAHGVRKFSATISADAGA-TAHELMATYGWKTVDQAETYTKGAD 327
           SAH +R  +AT+    G      L    G +++   E YT   D
Sbjct: 263 SAHKLRHTAATLMYRHGKVDIRSLQTILGHQSISTTEIYTHVND 306


>gi|198244691|ref|YP_002217878.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|205354490|ref|YP_002228291.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|207859151|ref|YP_002245802.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|197939207|gb|ACH76540.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|205274271|emb|CAR39290.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|206710954|emb|CAR35322.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|326625666|gb|EGE32011.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
 gi|326629624|gb|EGE35967.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 300

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 44/259 (16%), Positives = 90/259 (34%), Gaps = 19/259 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRKHTPSSAIQFLT 138
             L+  +  +++   D II  +G+   +          +        +   P+S    L+
Sbjct: 21  RQLSPITVQNYQRQLDAIIALAGETGLKSWQQCDAAIVRSFAVRSRRKGLGPASLALRLS 80

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WSEGSQPRLA 195
           ++R  F W V Q  +  NP   V  PK      +    +D+ +            + R  
Sbjct: 81  ALRSFFDWLVSQGELKANPAKGVSAPKAPRHLPKNIDVDDVNRLLDIDLNDPLAVRDRAM 140

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT--------VELPDGFMKLLAM 247
            E +  +GLR S+     ++HL  +   +     G+           V   + ++ L  +
Sbjct: 141 LEVMYGAGLRLSELVGLDIKHLDLDTGEVWVMGKGSKERRLPIGRNAVTWIEHWLDLRGL 200

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAH 305
               +E  F++   ++++A      F     K G+N     H +R   AT   ++     
Sbjct: 201 FASDEEALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVHPHKLRHSFATHMLESSGDLR 260

Query: 306 ELMATYGWKTVDQAETYTK 324
            +    G   +   + YT 
Sbjct: 261 GVQELLGHANLSTTQIYTH 279


>gi|120610000|ref|YP_969678.1| tyrosine recombinase XerD [Acidovorax citrulli AAC00-1]
 gi|120588464|gb|ABM31904.1| tyrosine recombinase XerD [Acidovorax citrulli AAC00-1]
          Length = 309

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 46/276 (16%), Positives = 94/276 (34%), Gaps = 25/276 (9%)

Query: 86  SLAVNSRISFESYF----DQIIRKSGDFD--YRKITTKHIRSGVESR--KHTPSSAIQFL 137
            L+ N+  ++          +     D           H+++   +R  +   +SA + L
Sbjct: 29  GLSRNTLAAYRRDLALYAQWLGEHVPDTAGMLDATMEHHLQAYFAARHAQTRATSANRRL 88

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK----SFWSEGSQPR 193
           T +R  F+WA+R+  +AI+P + ++  ++     +  +   ++       +  + G + R
Sbjct: 89  TVLRRYFQWALRERRIAIDPTVRLQAARQPLRVPKTLSAAQVEALLQSPDTSTALGLRDR 148

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDGFMKLLAM----- 247
              E +  SGLR ++       H       ++    G+    V   +   + L       
Sbjct: 149 AMLELMYASGLRVTELVTLKTYHAGLAEGVLRVMGKGSKERLVPFGEVAAQWLQRYLDHA 208

Query: 248 -----TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADA 300
                     +  F+      M    F +  K  A  AG++   S H +R   AT   + 
Sbjct: 209 RADILAGQRTDDLFVTRRGAGMTRAMFWVVVKKHAQSAGIHVPLSPHTLRHAFATHLLNH 268

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
           GA    +    G   +     YT  A      +   
Sbjct: 269 GADLRVVQLLLGHADISTTTIYTHVARERLKALHAQ 304


>gi|325473776|gb|EGC76964.1| integrase/recombinase XerD [Treponema denticola F0402]
          Length = 267

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 40/250 (16%), Positives = 87/250 (34%), Gaps = 26/250 (10%)

Query: 100 DQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL 159
           D +I  + + D          SG+ ++     +  + + ++   F++ + +     NP  
Sbjct: 3   DSLIENATEADCIDFILHRSESGIMAK-----TIAKDIAALNSFFRFLIIEGVRKDNPSE 57

Query: 160 SVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQ 215
           S+ERPKR+    R  + +++    +     S    + R  FE +  +GLR S+     ++
Sbjct: 58  SIERPKREKTLPRVLSPDEVDSLFAAIPLDSPNNIRDRALFELIYSAGLRVSEIVNLKME 117

Query: 216 HL--QNNIFSIKTQKTGTIITVE-----------LPDGFMKLLAMTPIGK----ETFFIN 258
            +    ++  +  +     I              + +   +LL            + F+N
Sbjct: 118 DIFYDEDLIKVTGKGNKERIVPFGSAAKYWLKQYILEARTELLKPKHPENTLISGSVFLN 177

Query: 259 NDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           N    +            +  +G+    H +R   AT     GA    +    G   +  
Sbjct: 178 NRGAVLTRKGIWKRINELSNFSGIETKVHTLRHSYATHLLAGGADLRSVQCLLGHSDIST 237

Query: 319 AETYTKGADR 328
            + YT   D+
Sbjct: 238 TQVYTHIEDK 247


>gi|312793099|ref|YP_004026022.1| tyrosine recombinase xerd [Caldicellulosiruptor kristjanssonii
           177R1B]
 gi|312180239|gb|ADQ40409.1| tyrosine recombinase XerD [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 291

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 99/278 (35%), Gaps = 23/278 (8%)

Query: 74  LISEYRKSAHWGSL-AVNSRISFESYFDQIIRKSGDFDYRKITTK-----HIRSGVESRK 127
           +I  +       +  + N+  S+     + I    +   +   T           ++   
Sbjct: 3   IIEAFGNHLQRQNRFSQNTISSYLRDAKKYIEFLDNIKIKLENTSQATLIAYIISMQKSG 62

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            + S+  + + S++V + +   Q  V I   + +E PK +    +  T++++++  S   
Sbjct: 63  KSNSTIARAIVSLKVFYDFLKTQNIVDIG-KIEIEPPKLEKSPPQILTRDEVEKLLSCPK 121

Query: 188 E----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
           E    G + +   E L  +G+R S+     +  +      I  +       + +    + 
Sbjct: 122 EDDIKGIRDKAMLELLYATGIRVSELINLNLDDINLEHGYIICKNKKRDRVIPIGSYAIS 181

Query: 244 LLAMTPI----------GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRK 291
            +                +E  F+N + ++M    F    K  A  AG++K  + H +R 
Sbjct: 182 AVERYLRHSRPYLAKNKDEEALFLNFNGERMTRQGFWKIVKFYAQSAGIDKEITPHVLRH 241

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             AT   + GA    +    G   +   + Y + A+  
Sbjct: 242 SFATHLIENGADVRAVQQMLGHADISTTQRYLQVANVK 279


>gi|55981508|ref|YP_144805.1| putative phage integrase/recombinase [Thermus thermophilus HB8]
 gi|55772921|dbj|BAD71362.1| putative phage integrase/recombinase [Thermus thermophilus HB8]
          Length = 293

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 45/273 (16%), Positives = 101/273 (36%), Gaps = 14/273 (5%)

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--- 125
            T+      +        L+ N+   +      +++  GD    ++T   +R+ +     
Sbjct: 3   GTITDWAEAWLLDCRARGLSPNTIGYYRDAVKAMVKVVGDKPMAELTADDLRAFLVKSFE 62

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
              +P        + R   +WAV++  + ++P   +  PK     +    + ++++  + 
Sbjct: 63  DGLSPGGVAARWRAARAFVRWAVKEGALGVDPTGKIRPPKVPEADLPVVREWEVKKLLAA 122

Query: 186 WSEGSQPRL--AFEFLLY-SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL-PDGF 241
              G  P    A   +L+ +GLR S+     V  ++     ++ +K G +  V +    +
Sbjct: 123 AEMGKNPLRDKALVMVLWDTGLRASEVLGLRVSDVKAEAVRVR-RKGGAVQWVPVSLPTY 181

Query: 242 MKLLA-----MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSAT 295
             +LA       P   +  F+      +      +  +  A  AG+  K  H  R+ +A 
Sbjct: 182 RAILAYARAERPPSDHDALFLTRSGLPLAYDGLKMVLRRLAEYAGLPPKPPHAFRRGAAV 241

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADR 328
                G  ++ L A  G K+      Y + A++
Sbjct: 242 AMVKNGMPSYALQAMLGHKSPVMTAHYVRLAEK 274


>gi|154488853|ref|ZP_02029702.1| hypothetical protein BIFADO_02161 [Bifidobacterium adolescentis
           L2-32]
 gi|154082990|gb|EDN82035.1| hypothetical protein BIFADO_02161 [Bifidobacterium adolescentis
           L2-32]
          Length = 308

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 55/283 (19%), Positives = 99/283 (34%), Gaps = 36/283 (12%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGVES--RKHTP 130
             Y K+     L+ N+R ++ S  ++    +RK G  D  ++T + +R  +    + H  
Sbjct: 11  DAYLKANR--GLSANTRRAYRSDVEECLVALRKQGCVDLNEVTIEDLRLWMAKSSKNHAR 68

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-- 188
           SS  +   ++R  F WA   +  + NP  S++ PK          +   QQ      E  
Sbjct: 69  SSMARKTVAVRGFFAWAYDHDMASANPAASLQTPKIPDTLPAVLNETQAQQLMDRVDEDG 128

Query: 189 ---------------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233
                            +     E L  +G+R ++     V  +     ++K    G   
Sbjct: 129 MEARSQEPNMKKQAIALRDAAMLELLYATGMRVAELVGLDVADVTFGNRTVKVTGKGDKQ 188

Query: 234 TV-----ELPDGFMKLLA------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
            V              L          +  + FF+ +   ++           +A KAGV
Sbjct: 189 RVMPFGAPADKALRDWLEHGRPVLCGDMSDDAFFLGSQGGRIGQRMVRKVVHDRARKAGV 248

Query: 283 -NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            + S H +R  +AT   D GA   E+    G  ++   + YT 
Sbjct: 249 PDISPHALRHSAATHMLDGGADLREVQEMLGHSSLKTTQRYTH 291


>gi|119899508|ref|YP_934721.1| integrase/recombinase [Azoarcus sp. BH72]
 gi|119671921|emb|CAL95835.1| integrase/recombinase [Azoarcus sp. BH72]
          Length = 305

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 52/274 (18%), Positives = 95/274 (34%), Gaps = 23/274 (8%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS----GVESRKHTPSSAIQFLTSMR 141
            LA N+   + S   Q          + I     +        SR+  P+S  + +++ R
Sbjct: 28  GLAANTIAGYRSDLAQFGAWLASRGTQLIEADESQLTAYLAEFSRRAKPASQRRLMSAWR 87

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLAFE 197
             ++  + Q  +A +P + ++ P       R  ++  ++   +        G + R   E
Sbjct: 88  RFYRGLLGQRRIAQDPTVQLDAPVTGERFPRTLSEAQVESLLAAPDVDTIHGLRDRSMLE 147

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLLAMT 248
            L  SGLR S+     +  +      I+    G+   +          L     +     
Sbjct: 148 LLYASGLRVSELVELKLFAISTGEGVIRVFGKGSKERLVPTGDIALEWLGRYLREARPAL 207

Query: 249 PIGK--ETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATISADAGAT 303
             G+  +  F++     M    F    K  A KAG+     S H +R   AT   + GA 
Sbjct: 208 LRGRTCDEVFVSQRGAGMTRQMFWRIIKQYAPKAGIPAQRISPHTLRHAFATHLINHGAD 267

Query: 304 AHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
              +    G   +   + YT  A R RL   ++R
Sbjct: 268 LRVVQLLLGHADISTTQIYTHVA-RERLKQLHAR 300


>gi|260575109|ref|ZP_05843110.1| integrase family protein [Rhodobacter sp. SW2]
 gi|259022731|gb|EEW26026.1| integrase family protein [Rhodobacter sp. SW2]
          Length = 313

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 51/270 (18%), Positives = 96/270 (35%), Gaps = 32/270 (11%)

Query: 90  NSRISFESYF----DQIIRKSGDFDYRKITTKHIRSGV-ESRKHTPSSAIQFLTSMRVLF 144
           N+++ +        D + R+ GDF      T         ++    ++  + L+S+R L+
Sbjct: 25  NTQLGYGRDLADFADWLARQGGDFATASRATVEAYLVFCGAQGLAAATRARRLSSIRQLY 84

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-------SEGSQPRLAFE 197
           ++AV + + A NP L ++ P +     +  +  ++++            +E ++     E
Sbjct: 85  RFAVEEGWRADNPALRLKGPAQAQHLPQVLSLAEVERLLQAARDKGRTGAEQARNAALLE 144

Query: 198 FLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKLLA---------- 246
            L  +G+R S+     V  ++ +    +   K G    V L       LA          
Sbjct: 145 LLYATGMRVSELVGLPVAAVRGDPRMILVRGKGGKERMVPLSPPARAALADWLAQRDTAE 204

Query: 247 ------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATIS 297
                   P  K  F   +    +    F    K  A +AGV+    + H +R   AT  
Sbjct: 205 AVAVKAGKPASKHLFPNRSAAGHLGREVFYALIKDIAVRAGVDPSKVTPHTLRHAFATHL 264

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGAD 327
              GA    +    G   +   E YT   D
Sbjct: 265 LAGGADLRVIQTLLGHADIATTEIYTHVLD 294


>gi|261400435|ref|ZP_05986560.1| tyrosine recombinase XerD [Neisseria lactamica ATCC 23970]
 gi|313668771|ref|YP_004049055.1| integrase/recombinase [Neisseria lactamica ST-640]
 gi|269209883|gb|EEZ76338.1| tyrosine recombinase XerD [Neisseria lactamica ATCC 23970]
 gi|313006233|emb|CBN87695.1| putative integrase/recombinase [Neisseria lactamica 020-06]
          Length = 291

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 42/263 (15%), Positives = 92/263 (34%), Gaps = 18/263 (6%)

Query: 85  GSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRV 142
             L+ N+  S+    ++I R+               + + V +     SS  + L++ + 
Sbjct: 17  RRLSRNTLDSYRRDLEKIARRLSLCGKTLADAEETDLAAAVYADGEQRSSQARALSACKR 76

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK----SFWSEGSQPRLAFEF 198
           L+ W   +   A NP   ++ PK         T++ + +      +    G + +   E 
Sbjct: 77  LYAWMEWEGMRADNPTRLLKPPKTDRNIPPLITEQQVSRLLDAPDTETPHGLRDKALLEL 136

Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG----------FMKLLAM 247
           +  +GLR S++      ++  +   I    K      V +               + + +
Sbjct: 137 MYATGLRVSEAVGLNFGNVDLDRGCITALGKGDKQRMVPMGQESAYWVGRYYTEARPVLL 196

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHE 306
                +  F++  K  ++     +  K  A++AG+   S H +R   AT     G     
Sbjct: 197 KGRSCDALFVSQKKTGISRQLAWMIVKEYASQAGIGHISPHSLRHAFATHLVQHGLDLRV 256

Query: 307 LMATYGWKTVDQAETYTKGADRI 329
           +    G   ++  + YT  A+  
Sbjct: 257 VQDMLGHADLNTTQIYTHIANVR 279


>gi|312793576|ref|YP_004026499.1| integrase family protein [Caldicellulosiruptor kristjanssonii
           177R1B]
 gi|312180716|gb|ADQ40886.1| integrase family protein [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 327

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 52/284 (18%), Positives = 105/284 (36%), Gaps = 22/284 (7%)

Query: 66  KKPTTLKWL---ISEYRKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRS 121
           K P T+K     +  + +      L + S+I      + I +        + +T  ++  
Sbjct: 23  KSPNTIKEYYYDLRTFLRYLKAKDLNILSQIEKIEDLENIDVSNFEIEKLKTLTLSNLYE 82

Query: 122 GVE----SRKHTPSSAIQFLTSMRVLFKWAV-RQEYVAINPCLSVERPKRKTEGIRPWTK 176
                     + P +  + + S+R  FK+   + + +  NP   +E PK      R  T 
Sbjct: 83  YFSFLATRFNNGPYARARKVASIRSFFKYLYSKAKLIPDNPAKDLESPKLGKRNPRYLTL 142

Query: 177 EDMQQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234
           ++ ++  S     ++ R        L  GLR S+     +  +++++  I  +     I 
Sbjct: 143 DESKKLLSSIDGENKERDFAIITLFLNCGLRLSELVNINLSDIKDDMLRIVGKGNKERII 202

Query: 235 V---ELPDGFMKLLAMTPI----GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--- 284
                  D     L + P      K+  F++  K++++        +     AG+N+   
Sbjct: 203 YLNKACKDAIENYLKVRPTEGVKDKDALFLSERKKRISRRTVQYIVEKYVKMAGINQKKI 262

Query: 285 SAHGVRKFSATISADAGA-TAHELMATYGWKTVDQAETYTKGAD 327
           SAH +R  +AT+    G      L    G +++   E YT   D
Sbjct: 263 SAHKLRHTAATLMYRHGKVDIRSLQTILGHQSISTTEIYTHVND 306


>gi|146296950|ref|YP_001180721.1| site-specific tyrosine recombinase XerC [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145410526|gb|ABP67530.1| phage integrase family protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 328

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 52/285 (18%), Positives = 106/285 (37%), Gaps = 24/285 (8%)

Query: 66  KKPTTLKWL---ISEYRKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRS 121
           K P T+K     +  + +      L + S+I      + I +        + +T  ++  
Sbjct: 23  KSPNTIKEYYYDLRTFLRYLKAKDLNILSQIEKIEDLENIDVSNFEIERLKTLTLSNLYE 82

Query: 122 GVE----SRKHTPSSAIQFLTSMRVLFKWAV-RQEYVAINPCLSVERPKRKTEGIRPWTK 176
                     + P +  + + S+R  FK+   + + +  NP   +E PK      R  T 
Sbjct: 83  YFSFLATRFNNGPYARARKVASIRSFFKYLYSKAKLIPDNPAKDLESPKLGKRNPRYLTL 142

Query: 177 EDMQQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234
           ++ ++  S     ++ R        L  GLR S+     +  +++++  I   K      
Sbjct: 143 DESKKLLSAIDGENKERDFAIITLFLNCGLRLSELVNINLSDIKDDMLRI-VGKGNKERI 201

Query: 235 VELPDGFMKL----LAMTPI----GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284
           + L     +     L + P      K+  F++  K++++        +     AG+N+  
Sbjct: 202 IYLNKACKEAIENYLKVRPTEGVKDKDALFLSERKKRISRRTVQYIVEKYVKMAGINQKK 261

Query: 285 -SAHGVRKFSATISADAGA-TAHELMATYGWKTVDQAETYTKGAD 327
            SAH +R  +AT+    G      L    G +++   E YT   D
Sbjct: 262 ISAHKLRHTAATLMYRHGKVDIRSLQTILGHQSISTTEIYTHVND 306


>gi|312127184|ref|YP_003992058.1| tyrosine recombinase xerd [Caldicellulosiruptor hydrothermalis 108]
 gi|311777203|gb|ADQ06689.1| tyrosine recombinase XerD [Caldicellulosiruptor hydrothermalis 108]
          Length = 291

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 99/278 (35%), Gaps = 23/278 (8%)

Query: 74  LISEYRKSAHWGSL-AVNSRISFESYFDQIIRKSGDFDYRKITTK-----HIRSGVESRK 127
           +I  +       +  + N+  S+     + I    +   +   T           ++   
Sbjct: 3   IIEAFGNHLQRQNRFSQNTISSYLRDAKKYIEFLDNIKIKLENTSQATLIAYIISMQKSG 62

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            + S+  + + S++V + +   Q  V I   + +E PK +    +  T++++++  S   
Sbjct: 63  KSNSTIARAIVSLKVFYDFLKIQNIVDIG-KIEIEPPKLEKSPPQILTRDEVEKLLSCPK 121

Query: 188 E----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
           E    G + +   E L  +G+R S+     +  +      I  +       + +    + 
Sbjct: 122 EDDIKGIRDKAMLELLYATGIRVSELINLNLDDINLEHGYIICKNKKRDRVIPIGSYAIS 181

Query: 244 LLA----------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRK 291
            +                +E  F+N + ++M    F    K  A  AG++K  + H +R 
Sbjct: 182 AVEKYLRHSRPYLAKNKDEEALFLNFNGERMTRQGFWKIVKFYAQSAGIDKEITPHVLRH 241

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             AT   + GA    +    G   +   + Y + A+  
Sbjct: 242 SFATHLIENGADVRAVQQMLGHADISTTQRYLQVANVK 279


>gi|218961859|ref|YP_001741634.1| Tyrosine recombinase xerD [Candidatus Cloacamonas acidaminovorans]
 gi|167730516|emb|CAO81428.1| Tyrosine recombinase xerD [Candidatus Cloacamonas acidaminovorans]
          Length = 313

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 56/305 (18%), Positives = 104/305 (34%), Gaps = 37/305 (12%)

Query: 61  INSPRKKPTTLKWLISE--------YRKSAHWG-----SLAVNSRISFESYFDQII---- 103
           +++  KKP T+   I E        Y  S  +       +A NS  S+       +    
Sbjct: 1   MSTSLKKPRTITAGIEEELSPALKSYLSSFVYHLKVERGMAKNSIESYRRDIGDFLLFCP 60

Query: 104 RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163
           ++ G+++   IT       ++      +S  +   ++   F +    +         V R
Sbjct: 61  KEIGNYETDDITK--YLLSLQEIGLLNTSVARKRVALGQFFGFLKDNDIETKVDMDLVPR 118

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ- 218
            K   +     T E+M Q  +     +    + +L  E L  +G+R S+     +  L  
Sbjct: 119 IKLGVQLPDVLTVEEMFQLLNSLPVKTPLEIRNKLMMELLYATGMRISELLSISLHDLNL 178

Query: 219 NNIFSIKTQKTGTIITVELPDGFMKL----------LAMTPIGKETFFINNDKQKMNATQ 268
                +   K      V   D   +L          + +     E  F+NN  ++M+   
Sbjct: 179 TERVILVHGKGSKQRYVPYVDTLDELFAKYLKQSRPILLKLKQSELLFLNNRGERMSRMG 238

Query: 269 FSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           F    +    +A + K  + H  R   AT   + G     + A  G  ++D  + YT   
Sbjct: 239 FWKILRKAVLEANIKKEVTPHTFRHSFATHLLEGGVNLRIVQALLGHSSIDTTQIYTH-I 297

Query: 327 DRIRL 331
           D  RL
Sbjct: 298 DMKRL 302


>gi|319937347|ref|ZP_08011754.1| site-specific tyrosine recombinase xerD [Coprobacillus sp. 29_1]
 gi|319807713|gb|EFW04306.1| site-specific tyrosine recombinase xerD [Coprobacillus sp. 29_1]
          Length = 301

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 49/270 (18%), Positives = 97/270 (35%), Gaps = 21/270 (7%)

Query: 89  VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--TPSSAIQFLTSMRVLFKW 146
            N       + + I +K    +   +   H+   ++   +    SS  + +TS++  + +
Sbjct: 26  ENYERDILHFINFIHKKYEVDNVNNVIKDHMYHYLKDLHNHLKASSVDRHMTSLKQFYIF 85

Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG----SQPRLAFEFLLYS 202
            V++  +  N   S E  K+        T  ++ Q     + G    ++ R   E L  S
Sbjct: 86  LVKENIIKDNIMSSFEMSKKAKYLPEVLTVGEVNQLLDSIAVGDPVSARNRCMVEVLYAS 145

Query: 203 GLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLA----------MTPIG 251
           GLR S+ C   +Q++  +   +K   K      V + +    LL              + 
Sbjct: 146 GLRVSEMCFLTLQNVNIHKGFVKCIGKRNKERIVPMNENCCLLLKEYIEEYRPQLCEEVS 205

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMA 309
            +  FIN   Q +    F    +    K+G+ K  + H +R   AT   +  A    +  
Sbjct: 206 SQYLFINKRGQPIQRDDFYHILENIVKKSGLKKHVTPHTLRHTFATHLLENDADLRSIQE 265

Query: 310 TYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
             G   +     YT  ++     I+  R++
Sbjct: 266 MLGHSDISTTTIYTHVSNNK--AIEEYRKL 293


>gi|260771883|ref|ZP_05880801.1| site-specific recombinase XerD [Vibrio metschnikovii CIP 69.14]
 gi|260613175|gb|EEX38376.1| site-specific recombinase XerD [Vibrio metschnikovii CIP 69.14]
          Length = 302

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 48/278 (17%), Positives = 104/278 (37%), Gaps = 26/278 (9%)

Query: 74  LISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFDYRKITTK-----HIRSGVESR 126
           L+ ++   A W    LA N+ +S+ +   +++      DYR            +S +  +
Sbjct: 11  LVEQFL-DAMWMERGLAENTLMSYRNDLTKLLLWMEQHDYRLDFISLAGLLEYQSWLTDQ 69

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185
            +  +S  + L+++R LF++  R++  + +P   +  PK      +  ++E ++   +  
Sbjct: 70  DYKQTSRARMLSALRRLFQYLHREKVRSDDPSALLVSPKLPQRLPKDLSEEQVEALLNAP 129

Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGF 241
                   + +   E L  +GLR ++     ++++           K G    V + +  
Sbjct: 130 DPNDPLELRDKAMLELLYATGLRVTELISLTMENISLRQGVVRVVGKGGKERLVPMGENA 189

Query: 242 MKLLAMTPIGK----------ETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288
           ++ +                 +  F +   Q+M    F    K  A  AG++    S H 
Sbjct: 190 IEWIETFIAQGRLHLLGDNTSDVVFPSKRAQQMTRQTFWHRIKYYAVIAGIDVEKLSPHV 249

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           +R   AT   + GA    +    G   +   + YT  A
Sbjct: 250 LRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVA 287


>gi|261881024|ref|ZP_06007451.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
 gi|270332233|gb|EFA43019.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
          Length = 407

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 87/227 (38%), Gaps = 19/227 (8%)

Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR--PW 174
           +H    ++SR      A       + + ++A+  E +  +PC  V   K   + +R    
Sbjct: 175 EHFVEYLQSRSVG-EGAKSIYQRFKKVVRYAIDHEVMLKDPCKGV-VCKVDEQILRKDVL 232

Query: 175 TKEDMQQFKSFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTG 230
           + +++Q       +   P  R AF   LY GLR  D      +++   N +   +  KT 
Sbjct: 233 SMDEIQSLIQCHYDNENPNVRRAFILCLYCGLRFCDVKDLTYKNIDYTNRLLKFEQNKTK 292

Query: 231 -----TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284
                + + + L DG + L+   P   ++   N      +        K    +AG+NK 
Sbjct: 293 GHSANSGVVIPLNDGLLSLIGEAPDDLDSSIFNLP----SYESCCKSVKRWVKRAGINKH 348

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
            S H  R   A    + GA    + +  G   +   E YT+  D+++
Sbjct: 349 ISWHCARHSFAVNILNNGANIKTVSSLLGHSGLKHTEKYTRAVDKLK 395


>gi|312135197|ref|YP_004002535.1| integrase family protein [Caldicellulosiruptor owensensis OL]
 gi|311775248|gb|ADQ04735.1| integrase family protein [Caldicellulosiruptor owensensis OL]
          Length = 328

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 44/218 (20%), Positives = 85/218 (38%), Gaps = 16/218 (7%)

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAV-RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
              + P +  + + S+R  FK+   + + +  NP   +E PK      R  T E+ ++  
Sbjct: 90  RFNNGPYARARKVASIRSFFKYLYSKAKLIPDNPAKDLESPKLGKRNPRYLTLEESKKLL 149

Query: 184 SFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241
           S     ++ R        L  GLR S+     +  +++++  I   K      + L    
Sbjct: 150 SAIDGENKERDFAMITLFLNCGLRLSELVNINLSDIKDDMLRI-VGKGNKERIIYLNKAC 208

Query: 242 MKL----LAMTPI----GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVR 290
            +     L + P      K+  F++  K++++        +     AG+N+   SAH +R
Sbjct: 209 KEAIENYLKVRPTEGVKDKDALFLSERKKRISRRTVQYIVEKYVKMAGINQKKISAHKLR 268

Query: 291 KFSATISADAGA-TAHELMATYGWKTVDQAETYTKGAD 327
             +AT+    G      L    G +++   E YT   D
Sbjct: 269 HTAATLMYRHGKVDIRSLQTILGHQSISTTEIYTHVND 306


>gi|312127552|ref|YP_003992426.1| integrase family protein [Caldicellulosiruptor hydrothermalis 108]
 gi|311777571|gb|ADQ07057.1| integrase family protein [Caldicellulosiruptor hydrothermalis 108]
          Length = 328

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 52/285 (18%), Positives = 106/285 (37%), Gaps = 24/285 (8%)

Query: 66  KKPTTLKWL---ISEYRKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRS 121
           K P T+K     +  + +      L + S+I      + I +        + +T  ++  
Sbjct: 23  KSPNTIKEYYYDLRTFLRYLKAKDLNMLSQIEKIEDLENIDVSNFEIEKLKALTLSNLYE 82

Query: 122 GVE----SRKHTPSSAIQFLTSMRVLFKWAV-RQEYVAINPCLSVERPKRKTEGIRPWTK 176
                     + P +  + + S+R  FK+   + + +  NP   +E PK      R  T 
Sbjct: 83  YFSFLATRFNNGPYARARKVASIRSFFKYLYSKAKLIPDNPAKDLESPKLGKRNPRYLTL 142

Query: 177 EDMQQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234
           ++ ++  S     ++ R        L  GLR S+     +  +++++  I   K      
Sbjct: 143 DESKKLLSAIDGENKERDFAIITLFLNCGLRLSELVNINLSDIKDDMLRI-VGKGNKERI 201

Query: 235 VELPDGFMKL----LAMTPI----GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284
           + L     +     L + P      K+  F++  K++++        +     AG+N+  
Sbjct: 202 IYLNKACKEAIENYLKVRPTEGVKDKDALFLSERKKRISRRTVQYIVEKYVKMAGINQKK 261

Query: 285 -SAHGVRKFSATISADAGA-TAHELMATYGWKTVDQAETYTKGAD 327
            SAH +R  +AT+    G      L    G +++   E YT   D
Sbjct: 262 ISAHKLRHTAATLMYRHGKVDIRSLQTILGHQSISTTEIYTHVND 306


>gi|172040772|ref|YP_001800486.1| integrase/recombinase [Corynebacterium urealyticum DSM 7109]
 gi|171852076|emb|CAQ05052.1| integrase/recombinase [Corynebacterium urealyticum DSM 7109]
          Length = 303

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 48/262 (18%), Positives = 84/262 (32%), Gaps = 22/262 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT----PSSAIQFLTSM 140
            +L+ N+  S+    D+ +   G     ++ T  I S + S         S+  + L ++
Sbjct: 24  RNLSRNTLDSYRRDTDRYLAWLGARSVTELNTGDIESFMASLAKGEGLAASTRARILAAV 83

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS-------QPR 193
           R   ++   +     +    V RP +     +  +  ++                  + R
Sbjct: 84  RNFHRFLTGEGVTEGDVADDVARPGQAASIPKALSIAEVTAILESCPNDDAASLIQIRDR 143

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLL------- 245
              E L  +G R S+     V  +       I   K      V + D  +  L       
Sbjct: 144 ALLEMLYSTGARVSELLGLDVDDVDPTEKLIIVRGKGSKERVVPVGDPALDALQHYLVRV 203

Query: 246 --AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGA 302
             A    G    F+N +  +M          + + KAGV   S H  R   AT   + GA
Sbjct: 204 RPAFNKKGSAALFLNRNGGRMGRQSAFNMVSSVSEKAGVAGVSPHSFRHSFATHLLEGGA 263

Query: 303 TAHELMATYGWKTVDQAETYTK 324
               +    G   V   + YTK
Sbjct: 264 DIRVVQELLGHSNVVTTQIYTK 285


>gi|284033002|ref|YP_003382933.1| tyrosine recombinase XerD [Kribbella flavida DSM 17836]
 gi|283812295|gb|ADB34134.1| tyrosine recombinase XerD [Kribbella flavida DSM 17836]
          Length = 313

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 48/287 (16%), Positives = 100/287 (34%), Gaps = 34/287 (11%)

Query: 71  LKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126
           +   +S Y         LA N+  S+     +        G     ++T   +   +   
Sbjct: 4   IGRAVSAYLDHLTVERGLAANTLASYRRDLRRYDEYLAGAGISALGRVTEAVVGDFLMRL 63

Query: 127 KH--------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
           +         T SSA + + ++R   K+ +R+    I+P  +V+ P       +  + ++
Sbjct: 64  REGDEHHPPLTASSAGRTVVAVRGFHKFCLREGLTVIDPAAAVKPPVPPQRLPKALSVDE 123

Query: 179 MQQFKSFWS--------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
           + +  +  +          ++     EFL  +G R S++    V  +      +  +  G
Sbjct: 124 VTRILAAAAGADAEPAVLATRDAALLEFLYGTGARISEAVGLDVDDVDLESGQVLLRGKG 183

Query: 231 T-IITVELPDGFMKLLAM-----------TPIGKETFFINNDKQKMNATQFSIWFKAKAT 278
           +    V +     + L+               G    F+N    +++        +  A 
Sbjct: 184 SKERVVPVGSYAREALSAYQVRGRPDLVARGRGTHALFLNARGGRLSRQSAWTVLRRAAQ 243

Query: 279 KAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           +AG++K  S H +R   AT   D GA    +    G  +V   + YT
Sbjct: 244 RAGISKEISPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQVYT 290


>gi|285019429|ref|YP_003377140.1| tyrosine recombinase [Xanthomonas albilineans GPE PC73]
 gi|283474647|emb|CBA17146.1| probable tyrosine recombinase protein [Xanthomonas albilineans]
          Length = 324

 Score =  129 bits (325), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 53/283 (18%), Positives = 96/283 (33%), Gaps = 32/283 (11%)

Query: 72  KWLISEYRKSAHW--GSLAVNSRISFESYFD---QIIRKSGDFDYRKITTK--HIRSGVE 124
              I ++   A W    LA  S  S+    +   +     GD           +  +   
Sbjct: 25  AAAIQQFL-DAAWTEQGLARQSLDSYRRDLEGFARWRDGVGDGLVGADRQALFNYLAWRT 83

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
              +T  S  ++L+S+R  F   +R+     +P   +E P+      +   +  +    +
Sbjct: 84  ELGYTQRSNARWLSSLRAFFALRLRRGQRGDDPTALLEPPRLPRSLPKALAESQIDALLA 143

Query: 185 F----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPD 239
                   G + R   E +  +GLR S+  +     +      ++ T K      V L +
Sbjct: 144 APDTTAPLGLRDRAMLELMYAAGLRVSELVQLPANAVNLRQGVLRVTGKGSKERLVPLGE 203

Query: 240 GFMKLLAM----------------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
                L                     G    FI+  ++ ++  QF +  K  AT AG++
Sbjct: 204 ESQHWLQCYLDTARSVLVAGQAVPARDGAVPLFIDAARRPLSRQQFWVLIKRYATLAGID 263

Query: 284 ---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
               S HG+R   AT   + GA    L    G  ++   + YT
Sbjct: 264 PMRISPHGLRHSFATHLLNRGADLRALQMLLGHSSLSTTQIYT 306


>gi|78186473|ref|YP_374516.1| tyrosine recombinase XerD [Chlorobium luteolum DSM 273]
 gi|78166375|gb|ABB23473.1| Tyrosine recombinase XerD [Chlorobium luteolum DSM 273]
          Length = 306

 Score =  129 bits (325), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 50/265 (18%), Positives = 94/265 (35%), Gaps = 25/265 (9%)

Query: 85  GSLAVNSRISFESYFDQ--IIRKSGDFDYRKITTK---HIRSGVESRKHTPSSAIQFLTS 139
            + A N+R S+ +   +  +  +  D     IT +   H    +      PSS  + +++
Sbjct: 25  RNFAGNTRESYRNDLGRYLLAMQEDDVPLEAITAERINHFVLALHQAGLEPSSIARNVSA 84

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEG---SQP 192
           +R L ++   +  +A NP  ++ +PK+        T ++ ++           G    + 
Sbjct: 85  IRSLHRFLFNEHRLASNPAETLHQPKQARYLPAVLTLQETERVLEAPMLQSPPGRFLLRD 144

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAM---- 247
           R   E L  SG+R ++      Q+L  +  F     K      V + D     +      
Sbjct: 145 RAILELLYASGIRVTELVDMTQQNLYLDERFIRIFGKGSKERLVPIGDAAAAWIRRYREE 204

Query: 248 ------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
                      +  F+N   +K+         K  A  AG+ K  S H  R   AT   +
Sbjct: 205 LRMKLSNRNSLDHLFLNARGRKLTRMAVYNMVKEYARLAGIEKNISPHTFRHTFATHLLE 264

Query: 300 AGATAHELMATYGWKTVDQAETYTK 324
            GA    +    G  ++   + YT 
Sbjct: 265 GGADLRAVQEMLGHSSIVATQIYTH 289


>gi|320535370|ref|ZP_08035484.1| putative site-specific tyrosine recombinase XerD [Treponema
           phagedenis F0421]
 gi|320147772|gb|EFW39274.1| putative site-specific tyrosine recombinase XerD [Treponema
           phagedenis F0421]
          Length = 255

 Score =  129 bits (325), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 34/228 (14%), Positives = 74/228 (32%), Gaps = 21/228 (9%)

Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
           H             +  + + ++   +++ + +     NP  ++E P+R+    R  + E
Sbjct: 2   HFIISRSEAGIMGKTTAKDIAALNSFYRFLILENVRQDNPAENIEAPRREKNLPRVLSPE 61

Query: 178 DMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTI 232
           ++             G + R  FE +  +GLR S+     ++ +  +      T K    
Sbjct: 62  EVDLLLDSIPLNSPNGIRDRALFELIYSAGLRVSEVVGLSLEDIFFDEQLLKVTGKGSKE 121

Query: 233 ITVELPDGFMKLLAMTPIG----------------KETFFINNDKQKMNATQFSIWFKAK 276
             V       + L     G                +   F+N + ++++        +  
Sbjct: 122 RIVPFGKQAKQQLQNYIDGARKAFIKPQYTENTETRGAVFLNKNGKRLSRKGIWKRLQEI 181

Query: 277 ATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              +G+N   H +R   AT     GA    +    G   +   + YT 
Sbjct: 182 EVISGINTKVHTLRHSYATHLLAGGADLRSVQCLLGHADISTTQIYTH 229


>gi|227495065|ref|ZP_03925381.1| possible integrase/recombinase [Actinomyces coleocanis DSM 15436]
 gi|226831517|gb|EEH63900.1| possible integrase/recombinase [Actinomyces coleocanis DSM 15436]
          Length = 302

 Score =  129 bits (325), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 46/276 (16%), Positives = 99/276 (35%), Gaps = 27/276 (9%)

Query: 83  HWGSLAVNSRISFESYFDQIIRK-SGDFDYRKIT-----TKHIRSGVESRKHTPSSAIQF 136
           H+   + +++ ++E+     +    G+  +  I       +   S    + H  +S  ++
Sbjct: 18  HFRGFSTHTQRAYENDVKAALEYCFGNDPFTPIDFNSQALRSFLSNRIRKGHARASVARY 77

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ----- 191
             S+R+   WA++Q ++  +P L ++  K      +  + E + Q  +   E +Q     
Sbjct: 78  AASLRLFSSWALKQGHLNSDPSLKLKTAKVDNHLPQVLSLEQINQLFNHLVETAQTGNVN 137

Query: 192 -PRLAF--EFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM 247
             R     E L   G+R ++     +  +  +  +++   K      V      ++ L  
Sbjct: 138 AIRDWATSELLYSCGIRVAELVGLNLTSVDGSNRTLRVIGKGNKERLVPFGTPALESLRA 197

Query: 248 TPIGKETFFINND-KQKMNATQFSIWF---------KAKATKAGVN-KSAHGVRKFSATI 296
                    +N    Q +                  +    +AGV   S HG+R  +AT 
Sbjct: 198 WVTQGRPQLVNERSGQALFLGSRGGRIDQRIVRECLEKACVQAGVPVLSPHGLRHCAATH 257

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
             + GA    +    G  ++   + YT   D +RL 
Sbjct: 258 MLEGGADLRTVQDMLGHASLATTQRYTH-VDAVRLS 292


>gi|71901322|ref|ZP_00683418.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella
           fastidiosa Ann-1]
 gi|71728906|gb|EAO31041.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella
           fastidiosa Ann-1]
          Length = 339

 Score =  129 bits (325), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 63/333 (18%), Positives = 112/333 (33%), Gaps = 28/333 (8%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
           +P F  + + + G + YY+  G   R   P          Y  A+     + E+      
Sbjct: 11  IPRFRVRPQ-KSGVVYYYYDHGGKPRKETPLG------RDYGLAI-KRWAELEHAQITPA 62

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVE 124
              T + +   YR      + A +++     Y + +++   D    +  I    IR  ++
Sbjct: 63  IAVTFRHVAERYRAEVI-PTKARSTQQMHHIYLNYLLQFFDDPPAPFEAIRPVDIRKYLD 121

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVA-INPCLSVERPKRKTEGIRPWTKEDMQQFK 183
            R     SA + ++    L  WA  +      NPC  + R K     +      D   ++
Sbjct: 122 WRPFKV-SANREISVFSHLCNWARSKGITDLANPCAGIRRNKESGRDVYI----DDATYR 176

Query: 184 SFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
           + +    Q  R A +    +G R SD      +H+ N    I   KTG  + + +     
Sbjct: 177 AVYQAADQTLRDAMDLAYLTGQRVSDVLSMDERHIVNGALEICQAKTGAKLAIAITGELA 236

Query: 243 KLLAMTPIGKE-------TFFINNDKQKMNATQFSIWFKAKATKAGVNKSA---HGVRKF 292
            L+      K           ++     +        FK     AG+ K A     +R  
Sbjct: 237 VLIKRIFDHKRGLKLRSTRLIVDEKGFGLGCMALRYRFKKARAAAGIAKQAFQFRDLRAK 296

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKG 325
           +AT  AD      +  A  G  +V   E Y + 
Sbjct: 297 AATDKADLAGDIRQAQAQLGHTSVVMTEHYVRK 329


>gi|320201208|gb|EFW75790.1| Phage integrase [Escherichia coli EC4100B]
          Length = 356

 Score =  129 bits (325), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 62/343 (18%), Positives = 115/343 (33%), Gaps = 25/343 (7%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHE---STFIPAYMSALTGSTPKREYINS 63
           LPP +     R+     Y     G+   L        +  I A +   +G   K      
Sbjct: 12  LPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLTARI 68

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
                 TL   +  Y K      +   + I++ S    I R   D     ITTK I + +
Sbjct: 69  NSDNSVTLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAML 128

Query: 124 ESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
                    +SA    +++   F+ A+ + ++  NP  +    K +    R    E ++ 
Sbjct: 129 NGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEYLKI 188

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE----- 236
           +++  S     RLA E  + +G R  D C      + +    ++  KTG  I +      
Sbjct: 189 YQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTVLHV 248

Query: 237 ----LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NKSAH 287
               +            +G ET   +  ++ +++   S +F      +G+       + H
Sbjct: 249 DALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPPTFH 308

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
            +R   +    +   +        G K+   A  Y    DR R
Sbjct: 309 ELR-SLSARLYEKQISDKFAQHLLGHKSDTMASQY--RDDRGR 348


>gi|150390286|ref|YP_001320335.1| tyrosine recombinase XerD [Alkaliphilus metalliredigens QYMF]
 gi|149950148|gb|ABR48676.1| tyrosine recombinase XerD [Alkaliphilus metalliredigens QYMF]
          Length = 294

 Score =  129 bits (325), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 41/262 (15%), Positives = 91/262 (34%), Gaps = 22/262 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS------GVESRKHTPSSAIQFLT 138
             L+ N+  S++    Q        D   I      +       ++      S+  + L 
Sbjct: 16  KHLSTNTLESYKRDVKQFTSYLAGSDIHDIEETTKTTIITYLFYLQKEGRAASTISRSLA 75

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI----RPWTKEDMQQFKSFWSEGSQPRL 194
           S+R  + + +  + V I+P  ++E PK   +          +  +QQ  +   +G + + 
Sbjct: 76  SLRSFYHYLLLHKKVDIDPTFNLESPKMVKKPPNILTLEEVELLLQQPLNTTPKGIRDKA 135

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL----PDGFMKLLA---- 246
             E L  +G+R ++     ++ +  N+  I+         + +         K +     
Sbjct: 136 MLELLYATGIRVTELISLNLEDVNVNLGYIRCCNNTKERVIPIGTLSLIALQKYINYYRD 195

Query: 247 --MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGA 302
                  +++ F+N    ++    F    K    +A + KS   H +R   AT   + GA
Sbjct: 196 AFTKDNEEKSLFLNYHGGRLTRQGFWKIIKVYTKQAAIEKSITPHTLRHSFATHLIENGA 255

Query: 303 TAHELMATYGWKTVDQAETYTK 324
               +    G   +   + Y +
Sbjct: 256 DLKSVQEMLGHSDISTTQVYAQ 277


>gi|326335596|ref|ZP_08201783.1| integrase/recombinase XerD [Capnocytophaga sp. oral taxon 338 str.
           F0234]
 gi|325692362|gb|EGD34314.1| integrase/recombinase XerD [Capnocytophaga sp. oral taxon 338 str.
           F0234]
          Length = 297

 Score =  129 bits (325), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 42/266 (15%), Positives = 93/266 (34%), Gaps = 28/266 (10%)

Query: 85  GSLAVNSRISFESYFDQIIR-----KSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFL 137
             ++ NS  S+    +++       +  +     I+ + +R  +    ++    S  + +
Sbjct: 17  RGMSENSVHSYLFDMEKLREFVAIHQIEETPV-NISAETLRMFIYEVGKELHARSQSRLI 75

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPR 193
           ++++  FK+ + + Y    P  +++ PK   +     + E++    +       EG + R
Sbjct: 76  SALKSFFKFLLLENYREDFPMETIDTPKFGMKLPDTLSLEEIDAIIAGIDLSTEEGHRNR 135

Query: 194 LAFEFLLYSGLRCSDSCRAGVQH--LQNNIFSIKTQKTGTIITVELPDGFMK-------- 243
              E L   GLR S+     +           +   K      V + +   K        
Sbjct: 136 AIIETLYGCGLRVSELVNLHLSDLFFSEGFIRV-LGKGNKQRLVPISEYTQKEINNYILH 194

Query: 244 ---LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISA 298
               + +     +  F+N   +++         K  A+  G+ K  S H  R   AT   
Sbjct: 195 QRKNIPIVKEFSDIVFLNRRGKQLTRAMIFTIIKQAASAIGLTKTISPHTFRHSFATHLL 254

Query: 299 DAGATAHELMATYGWKTVDQAETYTK 324
           + GA    +    G +++   E YT 
Sbjct: 255 ENGANLRAIQLMLGHESIITTEIYTH 280


>gi|218704094|ref|YP_002411613.1| Integrase from phage [Escherichia coli UMN026]
 gi|218431191|emb|CAR12067.1| Integrase from phage [Escherichia coli UMN026]
 gi|323976899|gb|EGB71987.1| bacteriophage lambda integrase domain-containing protein
           [Escherichia coli TW10509]
          Length = 356

 Score =  129 bits (324), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 62/343 (18%), Positives = 115/343 (33%), Gaps = 25/343 (7%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHE---STFIPAYMSALTGSTPKREYINS 63
           LPP +     R+     Y     G+   L        +  I A +   +G   K      
Sbjct: 12  LPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLTARI 68

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
                 TL   +  Y K      +   + I++ S    I R   D     ITTK I + +
Sbjct: 69  NSDNSVTLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDVPLEDITTKEIAAML 128

Query: 124 ESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
                    +SA    +++   F+ A+ + ++  NP  +    K +    R    E ++ 
Sbjct: 129 NGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEYLKI 188

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE----- 236
           +++  S     RLA E  + +G R  D C      + +    ++  KTG  I +      
Sbjct: 189 YQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTALHV 248

Query: 237 ----LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NKSAH 287
               +            +G ET   +  ++ +++   S +F      +G+       + H
Sbjct: 249 DALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPPTFH 308

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
            +R   +    +   +        G K+   A  Y    DR R
Sbjct: 309 ELR-SLSARLYEKQISDKFAQHLLGHKSDTMASQY--RDDRGR 348


>gi|323187771|gb|EFZ73069.1| integrase [Escherichia coli RN587/1]
          Length = 317

 Score =  129 bits (324), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 51/294 (17%), Positives = 98/294 (33%), Gaps = 17/294 (5%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD 110
            TGS  +            TL   +  Y        +   + + + S    I RK  D  
Sbjct: 16  YTGSRRESLIDRIKGADAITLHAWLDRYETILRERGIRPKTLLDYASKIRAIRRKLPDKP 75

Query: 111 YRKITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168
              I+TK + + + +   +   +SA    +++  +F+ A+ + +VA NP  +    K + 
Sbjct: 76  LADISTKEVAAMLNTYVAEGKAASAKLIRSTLVDVFREAIAEGHVATNPVTATRTAKPEV 135

Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
              R    E +    +        RLA +  + +G R  D C+     + +N   I+  K
Sbjct: 136 RRSRLTANEYVAIHHAAEPLPIWLRLAMDLAVVTGQRVGDLCKMKWSDINDNHLHIEQGK 195

Query: 229 TGTIITVELP-------DGFMKLL--AMTPIGKETFFINNDKQKMNATQFSIWFKAKATK 279
           TG  + + L             +L       G +T   +   + ++    S +F      
Sbjct: 196 TGAKLAIPLTLTIDALNISLADILQKCREASGSDTIIASTHHEPLSPKTVSKYFTKARNA 255

Query: 280 AGV-----NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           +G+       + H +R   +                 G K+   A  Y     R
Sbjct: 256 SGLSFDGDPPTFHELR-SLSARLYRNQIGDKFAQRLLGHKSDSMAARYRDSRGR 308


>gi|15676649|ref|NP_273793.1| integrase/recombinase XerD [Neisseria meningitidis MC58]
 gi|34223072|sp|Q9K068|XERD_NEIMB RecName: Full=Tyrosine recombinase xerD
 gi|7225980|gb|AAF41164.1| integrase/recombinase XerD [Neisseria meningitidis MC58]
 gi|325133733|gb|EGC56389.1| tyrosine recombinase XerD [Neisseria meningitidis M13399]
 gi|325140092|gb|EGC62621.1| tyrosine recombinase XerD [Neisseria meningitidis CU385]
          Length = 291

 Score =  129 bits (324), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 46/280 (16%), Positives = 98/280 (35%), Gaps = 21/280 (7%)

Query: 74  LISEYRKSAHWGS--LAVNSRISFESYFDQIIRKSGDFD--YRKITTKHIRSGVESRKHT 129
           LI    ++  W    L+ N+   +    ++I R+        +      + + V      
Sbjct: 5   LIDRLLETL-WLDRRLSQNTLNGYRRDLEKIARRLSQSGRMLKDADEADLAAAVYVDGEQ 63

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---- 185
            SS  + L++ + L+ W  R+     NP   ++ PK         T++ + +  +     
Sbjct: 64  RSSQARALSACKRLYIWMEREGIRTDNPTRLLKPPKIDKNIPTLITEQQISRLLAAPDTD 123

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG---- 240
              G + +   E +  +GLR S++      ++  +   I    K      V +       
Sbjct: 124 TPHGLRDKALLELMYATGLRVSEAVGLNFGNVDLDRGCITALGKGDKQRMVPMGQESAYW 183

Query: 241 ------FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFS 293
                   + L +     +  F++  K  ++     +  K  A++AG+   S H +R   
Sbjct: 184 VERYYTEARPLLLKGRNCDALFVSQKKTGISRQLAWMIVKEYASQAGIGHISPHSLRHAF 243

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           AT     G     +    G   ++  + YT  A+    G+
Sbjct: 244 ATHLVRHGLDLRVVQDMLGHADLNTTQIYTHVANVWLQGV 283


>gi|283769465|ref|ZP_06342361.1| phage integrase, N-terminal SAM domain protein [Bulleidia extructa
           W1219]
 gi|283103733|gb|EFC05119.1| phage integrase, N-terminal SAM domain protein [Bulleidia extructa
           W1219]
          Length = 297

 Score =  129 bits (324), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 52/265 (19%), Positives = 97/265 (36%), Gaps = 20/265 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE--SRKHTPSSAIQFLTSMRV 142
              +  +  S+E+   Q +    +          ++   +  S++ T  S+   +     
Sbjct: 18  QGKSPRTVRSYENDLKQYLAYLKEKHILDSQKVTLQVVQDFLSQQSTIKSSNSVVHMATS 77

Query: 143 LFKWAVRQEY--VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLAF 196
           +  +    E+     NP   ++  K +T      + E+++Q  + +     +    R   
Sbjct: 78  IRNFHEDIEFSTGEENPVSLIQVRKNETYLPSFLSVEEVKQLLNSFTRDDPKQELNRTIL 137

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLA-----MTPI 250
           E +   GLR S+ C   V  +Q     ++   K      V +P+  +K L      + PI
Sbjct: 138 ELIYACGLRISELCSLTVAQVQLETGILRILGKGNKERIVPIPNQVVKDLDYYLNLIRPI 197

Query: 251 ----GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATA 304
                  TFFIN+   ++ A    +  K KA + G  K  + H +R   AT    AGA  
Sbjct: 198 WNQHKTNTFFINHLGNRITARSIQLLLKQKAMECGFQKDITPHSLRHTYATHLLQAGADL 257

Query: 305 HELMATYGWKTVDQAETYTKGADRI 329
             +    G   +   E YT   +R 
Sbjct: 258 RIIQELLGHSNIKTTEIYTHVQNRQ 282


>gi|218553295|ref|YP_002386208.1| Integrase from phage [Escherichia coli IAI1]
 gi|218360063|emb|CAQ97610.1| Integrase from phage [Escherichia coli IAI1]
          Length = 356

 Score =  129 bits (324), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 62/343 (18%), Positives = 115/343 (33%), Gaps = 25/343 (7%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHE---STFIPAYMSALTGSTPKREYINS 63
           LPP +     R+     Y     G+   L        +  I A +   +G   K      
Sbjct: 12  LPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLTARI 68

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
                 TL   +  Y K      +   + I++ S    I R   D     ITTK I + +
Sbjct: 69  NSDNSVTLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAML 128

Query: 124 ESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
                    +SA    +++   F+ A+ + ++  NP  +    K +    R    E ++ 
Sbjct: 129 NGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEYLKI 188

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE----- 236
           +++  S     RLA E  + +G R  D C      + +    ++  KTG  I +      
Sbjct: 189 YQAAESLPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTALHV 248

Query: 237 ----LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NKSAH 287
               +            +G ET   +  ++ +++   S +F      +G+       + H
Sbjct: 249 DALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPPTFH 308

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
            +R   +    +   +        G K+   A  Y    DR R
Sbjct: 309 ELR-SLSARLYEKQISDKFAQHLLGHKSDTMASQY--RDDRGR 348


>gi|238022334|ref|ZP_04602760.1| hypothetical protein GCWU000324_02241 [Kingella oralis ATCC 51147]
 gi|237866948|gb|EEP67990.1| hypothetical protein GCWU000324_02241 [Kingella oralis ATCC 51147]
          Length = 300

 Score =  129 bits (324), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 41/262 (15%), Positives = 89/262 (33%), Gaps = 18/262 (6%)

Query: 86  SLAVNSRISFESYFDQI--IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL 143
            L+ N+  ++     +I     +     +      + + +   +  P S  + L++ + L
Sbjct: 25  RLSQNTLDAYRRDLTKIATRLANEHSSLKTTDAVQLAAAIYVAQEQPRSQARALSACKRL 84

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKSFWSEGSQPRLAFEFL 199
           + W       + NPC  +   K+        T++ +        +    G + +   E +
Sbjct: 85  YAWLEETGQRSDNPCRDLRTAKQARTLPPIITEQHITDLLNAPDTETPHGLRDKALLELI 144

Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLL-----AMTPI--- 250
             +GLR S++    +  +      + T  K      V + +  +  L        P    
Sbjct: 145 YATGLRVSEAVGLQLNEINLQSGMVNTIGKGDKQRIVPMGEEAVYWLEHYLQHARPALLK 204

Query: 251 --GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHEL 307
               E  F++  K  ++     +     A +AG+   S H +R   AT   + GA    +
Sbjct: 205 NARCEAVFVSQKKTGISRQLAWMAVSRYAEQAGMPHISPHDLRHAFATHLVNHGADLRVV 264

Query: 308 MATYGWKTVDQAETYTKGADRI 329
               G   +   + YT  A+  
Sbjct: 265 QTLLGHADIATTQIYTHVANER 286


>gi|313906097|ref|ZP_07839448.1| integrase family protein [Eubacterium cellulosolvens 6]
 gi|313469086|gb|EFR64437.1| integrase family protein [Eubacterium cellulosolvens 6]
          Length = 281

 Score =  129 bits (324), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 38/260 (14%), Positives = 91/260 (35%), Gaps = 22/260 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTK------HIRSGVESRKHTPSSAIQFLT 138
              + N+ IS++           +       +            +E  K + ++  + + 
Sbjct: 17  KKTSYNTEISYKRDLKNAAAYLEEQRVSSFESATETNLYSYMLYLEREKKSAATVSRSIA 76

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRL 194
           S+R  +++ +R+  +  +P   ++ P+ + +     T ++  +  +       +G + R 
Sbjct: 77  SLRSFYQYLLREHKIDKDPSEHLKAPRVEKKVPEILTIDEADRLLAQPDRKKNKGLRDRA 136

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP--------DGFMKLLA 246
             + L  +G+R S+     ++ +  ++  I  ++      + +         +       
Sbjct: 137 MLQLLYCTGIRVSELVHMKMEDVNLDLGYITCRENSRERIIPMTQGTRIILDEYLESARD 196

Query: 247 MTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302
               GKE+   F N    +M+   F    K  A  AG+ K  + H +R   A      G 
Sbjct: 197 SLLKGKESEYLFCNCSGGEMSRQGFWKVLKVYAQDAGIKKDITPHTMRHSFAAHQLQKGT 256

Query: 303 TAHELMATYGWKTVDQAETY 322
             H +    G   V   + Y
Sbjct: 257 DIHSVQRMLGHAGVTTMQMY 276


>gi|254478334|ref|ZP_05091713.1| site-specific recombinase, phage integrase family
           [Carboxydibrachium pacificum DSM 12653]
 gi|214035692|gb|EEB76387.1| site-specific recombinase, phage integrase family
           [Carboxydibrachium pacificum DSM 12653]
          Length = 373

 Score =  129 bits (324), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 59/331 (17%), Positives = 117/331 (35%), Gaps = 40/331 (12%)

Query: 49  SALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSG 107
            AL     K E          TL+  I+E+ K       A  + +S +S  D  II   G
Sbjct: 42  KALAEIIAKIEKNEFIEPSKITLQQFINEWLKIYGEPKWAPKTLVSNKSLIDNYIIPNLG 101

Query: 108 DFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP 164
             + +K+    I+    S K      ++       +  + K+AV+ +Y+A NPC  VE P
Sbjct: 102 HIELQKLKPVEIQKFYNSLKEKQLSNTTINYVHRLLNQVLKFAVKWQYIAKNPCELVEAP 161

Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
           K+  +    W  E +++ K  + + +   +     LY+GLR  + C    + +     +I
Sbjct: 162 KKDKKEFVTWNFEHVKKAKKIFKD-TPIYIHVMIALYTGLRLGEICGLRWEDIDFKNQTI 220

Query: 225 KTQKTGTIIT----------------VELPDGFMKLLAMTPIGK---------------E 253
             ++T   I                 + +PD  +++L      +               E
Sbjct: 221 TVRRTAQRIDGRFIFKEPKTETSKGIISIPDFLVQILKQEKNKQLQNKLIFGEKYVTEYE 280

Query: 254 TFF-INNDKQKMNATQFSIWFKAK-ATKAGVNK-SAHGVRKFSATISADAGATAHELMAT 310
            F  +  D +       +  F+     ++ +     H +R   AT+   +G     +   
Sbjct: 281 GFISVWEDGRFKEPDYVTKKFRKILKKQSDIPVIRFHDLRHTHATLMLRSGVDLKIISKR 340

Query: 311 YGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
                +     +    D + +  +  R++ S
Sbjct: 341 LRHGRISTTADFYSHVD-LEMDREALRKLES 370


>gi|320654274|gb|EFX22329.1| Phage integrase family protein [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
          Length = 356

 Score =  129 bits (324), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 62/343 (18%), Positives = 115/343 (33%), Gaps = 25/343 (7%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHE---STFIPAYMSALTGSTPKREYINS 63
           LPP +     R+     Y     G+   L        +  I A +   +G   K      
Sbjct: 12  LPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLTTRI 68

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
                 TL   +  Y K      +   + I++ S    I R   D     ITTK I + +
Sbjct: 69  NSDNSVTLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAML 128

Query: 124 ESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
                    +SA    +++   F+ A+ + ++  NP  +    K +    R    E ++ 
Sbjct: 129 NGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEYLKI 188

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE----- 236
           +++  S     RLA E  + +G R  D C      + +    ++  KTG  I +      
Sbjct: 189 YQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTTLHV 248

Query: 237 ----LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NKSAH 287
               +            +G ET   +  ++ +++   S +F      +G+       + H
Sbjct: 249 DALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPPTFH 308

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
            +R   +    +   +        G K+   A  Y    DR R
Sbjct: 309 ELR-SLSARLYEKQISDKFAQHLLGHKSDTMASQY--RDDRGR 348


>gi|300907025|ref|ZP_07124694.1| phage integrase, SAM-like domain protein [Escherichia coli MS 84-1]
 gi|301304025|ref|ZP_07210142.1| phage integrase, SAM-like domain protein [Escherichia coli MS
           124-1]
 gi|331682197|ref|ZP_08382819.1| integrase [Escherichia coli H299]
 gi|300401246|gb|EFJ84784.1| phage integrase, SAM-like domain protein [Escherichia coli MS 84-1]
 gi|300840632|gb|EFK68392.1| phage integrase, SAM-like domain protein [Escherichia coli MS
           124-1]
 gi|315257687|gb|EFU37655.1| phage integrase, SAM-like domain protein [Escherichia coli MS 85-1]
 gi|331080621|gb|EGI51797.1| integrase [Escherichia coli H299]
          Length = 356

 Score =  129 bits (324), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 62/343 (18%), Positives = 115/343 (33%), Gaps = 25/343 (7%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHE---STFIPAYMSALTGSTPKREYINS 63
           LPP +     R+     Y     G+   L        +  I A +   +G   K      
Sbjct: 12  LPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLTARI 68

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
                 TL   +  Y K      +   + I++ S    I R   D     ITTK I + +
Sbjct: 69  NSDNSVTLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAML 128

Query: 124 ESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
                    +SA    +++   F+ A+ + ++  NP  +    K +    R    E ++ 
Sbjct: 129 NGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEYLKI 188

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE----- 236
           +++  S     RLA E  + +G R  D C      + +    ++  KTG  I +      
Sbjct: 189 YQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTTLHV 248

Query: 237 ----LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NKSAH 287
               +            +G ET   +  ++ +++   S +F      +G+       + H
Sbjct: 249 DALGISMKETLDKCKKILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPPTFH 308

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
            +R   +    +   +        G K+   A  Y    DR R
Sbjct: 309 ELR-SLSARLYEKQISDKFAQHLLGHKSDTMASQY--RDDRGR 348


>gi|260866896|ref|YP_003233298.1| putative integrase [Escherichia coli O111:H- str. 11128]
 gi|257763252|dbj|BAI34747.1| putative integrase [Escherichia coli O111:H- str. 11128]
 gi|323179992|gb|EFZ65548.1| integrase [Escherichia coli 1180]
          Length = 358

 Score =  129 bits (324), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 61/343 (17%), Positives = 113/343 (32%), Gaps = 25/343 (7%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMS---ALTGSTPKREYINS 63
           LPP +     R+     Y     G+   L          A  +     +G   K      
Sbjct: 14  LPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLTARI 70

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
                 TL   +  Y K      +   + I++ S    I R   D     ITTK I + +
Sbjct: 71  NSDNSVTLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAML 130

Query: 124 ESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
                    +SA    +++   F+ A+ + ++  NP  +    K +    R    E ++ 
Sbjct: 131 SGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEYLKI 190

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE----- 236
           +++  S     RLA E  + +G R  D C      + +    ++  KTG  I +      
Sbjct: 191 YQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTTLHV 250

Query: 237 ----LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NKSAH 287
               +            +G ET   +  ++ +++   S +F      +G+       + H
Sbjct: 251 DALGISMKETLDKCKEILGGETIIASTHREPLSSGTVSRYFMRARKASGLSFEGDPPTFH 310

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
            +R   +    +   +        G K+   A  Y    DR R
Sbjct: 311 ELR-SLSARLYEKQISDKFAQHLLGHKSDTMASQY--RDDRGR 350


>gi|308388941|gb|ADO31261.1| putative integrase/recombinase [Neisseria meningitidis alpha710]
          Length = 291

 Score =  129 bits (324), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 46/280 (16%), Positives = 98/280 (35%), Gaps = 21/280 (7%)

Query: 74  LISEYRKSAHWGS--LAVNSRISFESYFDQIIRKSGDFD--YRKITTKHIRSGVESRKHT 129
           LI    ++  W    L+ N+   +    ++I R+        +      + + V      
Sbjct: 5   LIDRLLETL-WLDRRLSQNTLNGYRRDLEKIARRLSQSGRMLKDADEADLAAAVYVDGEQ 63

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---- 185
            SS  + L++ + L+ W  R+     NP   ++ PK         T++ + +  +     
Sbjct: 64  RSSQARALSACKRLYIWMEREGIRTDNPTRLLKPPKIDKNIPTLITEQQISRLLATPDTD 123

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG---- 240
              G + +   E +  +GLR S++      ++  +   I    K      V +       
Sbjct: 124 TPHGLRDKALLELMYATGLRVSEAVGLNFGNVDLDRGCITALGKGDKQRMVPMGQESAYW 183

Query: 241 ----FMKLLAMTPIGK--ETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFS 293
               + +       G+  +  F++  K  ++     +  K  A +AG+   S H +R   
Sbjct: 184 VGRYYTEARPALLKGRSCDALFVSQKKTGISRQLAWMIVKEYAGRAGIGHISPHSLRHAF 243

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           AT     G     +    G   ++  + YT  A+    G+
Sbjct: 244 ATHLVQHGLDLRVVQDMLGHADLNTTQIYTHVANVWLQGV 283


>gi|168750266|ref|ZP_02775288.1| phage integrase family [Escherichia coli O157:H7 str. EC4113]
 gi|168757063|ref|ZP_02782070.1| phage integrase family [Escherichia coli O157:H7 str. EC4401]
 gi|168767219|ref|ZP_02792226.1| phage integrase family [Escherichia coli O157:H7 str. EC4486]
 gi|168776481|ref|ZP_02801488.1| phage integrase family [Escherichia coli O157:H7 str. EC4196]
 gi|168779262|ref|ZP_02804269.1| phage integrase family [Escherichia coli O157:H7 str. EC4076]
 gi|168800794|ref|ZP_02825801.1| phage integrase family protein [Escherichia coli O157:H7 str.
           EC508]
 gi|193065593|ref|ZP_03046660.1| phage integrase family [Escherichia coli E22]
 gi|194429706|ref|ZP_03062223.1| phage integrase family protein [Escherichia coli B171]
 gi|195936762|ref|ZP_03082144.1| lambda integrase [Escherichia coli O157:H7 str. EC4024]
 gi|208807102|ref|ZP_03249439.1| phage integrase family protein [Escherichia coli O157:H7 str.
           EC4206]
 gi|208815031|ref|ZP_03256210.1| phage integrase family protein [Escherichia coli O157:H7 str.
           EC4045]
 gi|208822504|ref|ZP_03262823.1| phage integrase family protein [Escherichia coli O157:H7 str.
           EC4042]
 gi|209397327|ref|YP_002269402.1| phage integrase family protein [Escherichia coli O157:H7 str.
           EC4115]
 gi|254160836|ref|YP_003043944.1| integrase [Escherichia coli B str. REL606]
 gi|291281709|ref|YP_003498527.1| Phage integrase family [Escherichia coli O55:H7 str. CB9615]
 gi|307137380|ref|ZP_07496736.1| Phage integrase family protein [Escherichia coli H736]
 gi|331641269|ref|ZP_08342404.1| integrase [Escherichia coli H736]
 gi|331645918|ref|ZP_08347021.1| integrase [Escherichia coli M605]
 gi|187768129|gb|EDU31973.1| phage integrase family [Escherichia coli O157:H7 str. EC4196]
 gi|188015490|gb|EDU53612.1| phage integrase family [Escherichia coli O157:H7 str. EC4113]
 gi|189002936|gb|EDU71922.1| phage integrase family [Escherichia coli O157:H7 str. EC4076]
 gi|189355874|gb|EDU74293.1| phage integrase family [Escherichia coli O157:H7 str. EC4401]
 gi|189363411|gb|EDU81830.1| phage integrase family [Escherichia coli O157:H7 str. EC4486]
 gi|189376950|gb|EDU95366.1| phage integrase family protein [Escherichia coli O157:H7 str.
           EC508]
 gi|192926778|gb|EDV81405.1| phage integrase family [Escherichia coli E22]
 gi|194412265|gb|EDX28570.1| phage integrase family protein [Escherichia coli B171]
 gi|208726903|gb|EDZ76504.1| phage integrase family protein [Escherichia coli O157:H7 str.
           EC4206]
 gi|208731679|gb|EDZ80367.1| phage integrase family protein [Escherichia coli O157:H7 str.
           EC4045]
 gi|208737989|gb|EDZ85672.1| phage integrase family protein [Escherichia coli O157:H7 str.
           EC4042]
 gi|209158727|gb|ACI36160.1| phage integrase family protein [Escherichia coli O157:H7 str.
           EC4115]
 gi|253972737|gb|ACT38408.1| integrase [Escherichia coli B str. REL606]
 gi|290761582|gb|ADD55543.1| Phage integrase family [Escherichia coli O55:H7 str. CB9615]
 gi|309700991|emb|CBJ00289.1| integrase [Escherichia coli ETEC H10407]
 gi|315614643|gb|EFU95285.1| integrase [Escherichia coli 3431]
 gi|320643338|gb|EFX12524.1| Phage integrase family protein [Escherichia coli O157:H- str.
           493-89]
 gi|320648681|gb|EFX17319.1| Phage integrase family protein [Escherichia coli O157:H- str. H
           2687]
 gi|320664810|gb|EFX31948.1| Phage integrase family protein [Escherichia coli O157:H7 str.
           LSU-61]
 gi|323158819|gb|EFZ44832.1| integrase [Escherichia coli E128010]
 gi|323191112|gb|EFZ76377.1| integrase [Escherichia coli RN587/1]
 gi|326345702|gb|EGD69441.1| Phage integrase [Escherichia coli O157:H7 str. 1125]
 gi|327254456|gb|EGE66078.1| integrase [Escherichia coli STEC_7v]
 gi|331038067|gb|EGI10287.1| integrase [Escherichia coli H736]
 gi|331044670|gb|EGI16797.1| integrase [Escherichia coli M605]
          Length = 356

 Score =  129 bits (324), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 62/343 (18%), Positives = 115/343 (33%), Gaps = 25/343 (7%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHE---STFIPAYMSALTGSTPKREYINS 63
           LPP +     R+     Y     G+   L        +  I A +   +G   K      
Sbjct: 12  LPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLTARI 68

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
                 TL   +  Y K      +   + I++ S    I R   D     ITTK I + +
Sbjct: 69  NSDNSVTLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAML 128

Query: 124 ESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
                    +SA    +++   F+ A+ + ++  NP  +    K +    R    E ++ 
Sbjct: 129 NGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEYLKI 188

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE----- 236
           +++  S     RLA E  + +G R  D C      + +    ++  KTG  I +      
Sbjct: 189 YQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTTLHV 248

Query: 237 ----LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NKSAH 287
               +            +G ET   +  ++ +++   S +F      +G+       + H
Sbjct: 249 DALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPPTFH 308

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
            +R   +    +   +        G K+   A  Y    DR R
Sbjct: 309 ELR-SLSARLYEKQISDKFAQHLLGHKSDTMASQY--RDDRGR 348


>gi|291561258|emb|CBL40057.1| tyrosine recombinase XerD subunit [butyrate-producing bacterium
           SS3/4]
          Length = 284

 Score =  129 bits (324), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 41/261 (15%), Positives = 85/261 (32%), Gaps = 22/261 (8%)

Query: 88  AVNSRISFESYFDQIIRKSGD------FDYRKITTKHIRSGVESRKHTPSSAIQFLTSMR 141
           + N+ +S++    ++     +          K         +E      S+  + L S R
Sbjct: 8   SKNTTLSYQRDLLKMADYLEENGITDCGKVTKTALNSYILFLEKEGKAASTVSRALASTR 67

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLAFE 197
             F W  ++  +  +P  S+  PK + +     T +++ +          +  + +   E
Sbjct: 68  SFFGWLFKEGRIRRDPADSMHAPKIEKKVPVILTVDEVTKLLEQPSGANPKEIRDKAMLE 127

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL----PDGFMKLLAMTP---- 249
            L  +G+R ++     +  +  +I  I  +       +       D   K L        
Sbjct: 128 LLYATGIRVTELVNLKLSDVNMSIGFITCRDEHKERMIPFGHAAKDALAKYLESASETFL 187

Query: 250 --IGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAH 305
                E  F N   + M+   F    K    +AG+  + + H +R   A      GA   
Sbjct: 188 KGTRSELLFTNYSGRAMSRQGFWKIIKYYGERAGIEEDITPHTLRHSFAAHLLSNGADMR 247

Query: 306 ELMATYGWKTVDQAETYTKGA 326
            +    G   +   + YT  A
Sbjct: 248 AVQTMMGHSDLASTQMYTAYA 268


>gi|261392878|emb|CAX50459.1| tyrosine recombinase XerD [Neisseria meningitidis 8013]
 gi|325144209|gb|EGC66516.1| tyrosine recombinase XerD [Neisseria meningitidis M01-240013]
 gi|325203840|gb|ADY99293.1| tyrosine recombinase XerD [Neisseria meningitidis M01-240355]
 gi|325206404|gb|ADZ01857.1| tyrosine recombinase XerD [Neisseria meningitidis M04-240196]
          Length = 291

 Score =  129 bits (324), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 46/280 (16%), Positives = 98/280 (35%), Gaps = 21/280 (7%)

Query: 74  LISEYRKSAHWGS--LAVNSRISFESYFDQIIRKSGDFD--YRKITTKHIRSGVESRKHT 129
           LI    ++  W    L+ N+   +    ++I R+        +      + + V      
Sbjct: 5   LIDRLLETL-WLDRRLSQNTLNGYRRDLEKIARRLSQSGRMLKDADEADLAAAVYVDGEQ 63

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---- 185
            SS  + L++ + L+ W  R+     NP   ++ PK         T++ + +  +     
Sbjct: 64  RSSQARALSACKRLYIWMEREGIRTDNPTRLLKPPKIDKNIPTLITEQQISRLLATPDTD 123

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG---- 240
              G + +   E +  +GLR S++      ++  +   I    K      V +       
Sbjct: 124 TPHGLRDKALLELMYATGLRVSEAVGLNFGNVDLDRGCITALGKGDKQRMVPMGQESAYW 183

Query: 241 ------FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFS 293
                   + L +     +  F++  K  ++     +  K  A++AG+   S H +R   
Sbjct: 184 VERYYTEARPLLLKGRNCDALFVSQKKTGISRQLAWMIVKEYASQAGIGHISPHSLRHAF 243

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           AT     G     +    G   ++  + YT  A+    G+
Sbjct: 244 ATHLVRHGLDLRVVQDMLGHADLNTTQIYTHVANVWLQGV 283


>gi|300919957|ref|ZP_07136417.1| phage integrase, SAM-like domain protein [Escherichia coli MS
           115-1]
 gi|300413014|gb|EFJ96324.1| phage integrase, SAM-like domain protein [Escherichia coli MS
           115-1]
          Length = 356

 Score =  129 bits (324), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 62/343 (18%), Positives = 115/343 (33%), Gaps = 25/343 (7%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHE---STFIPAYMSALTGSTPKREYINS 63
           LPP +     R+     Y     G+   L        +  I A +   +G   K      
Sbjct: 12  LPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLTARI 68

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
                 TL   +  Y K      +   + I++ S    I R   D     ITTK I + +
Sbjct: 69  NSDNSVTLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDAPLENITTKEIAAML 128

Query: 124 ESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
                    +SA    +++   F+ A+ + ++  NP  +    K +    R    E ++ 
Sbjct: 129 NGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEYLKI 188

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE----- 236
           +++  S     RLA E  + +G R  D C      + +    ++  KTG  I +      
Sbjct: 189 YQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTTLHV 248

Query: 237 ----LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NKSAH 287
               +            +G ET   +  ++ +++   S +F      +G+       + H
Sbjct: 249 DALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPPTFH 308

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
            +R   +    +   +        G K+   A  Y    DR R
Sbjct: 309 ELR-SLSARLYEKQISDKFAQHLLGHKSDTMASQY--RDDRGR 348


>gi|302335678|ref|YP_003800885.1| integrase family protein [Olsenella uli DSM 7084]
 gi|301319518|gb|ADK68005.1| integrase family protein [Olsenella uli DSM 7084]
          Length = 308

 Score =  129 bits (324), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 52/289 (17%), Positives = 101/289 (34%), Gaps = 26/289 (8%)

Query: 71  LKWLISEYRKSAH-WGSLAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVE 124
           L  L+  +        +L+ N+  ++ +           +     D      +     + 
Sbjct: 12  LDALLRRFLSDLSVTRNLSENTIRAYGTDLAAYARWTRRQGVDPLDVTHSQLRAYLGELV 71

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
             +++  +  + L+++R L++W VR+ Y   +   ++  PK      +  T  D+ Q   
Sbjct: 72  RARYSSRTLNRRLSAIRTLYRWLVREGYTNKDAAAAIASPKVARTLPKTMTDPDVCQLLG 131

Query: 185 FWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPD 239
              E    G + R   E L  SG R S+  R  V  +      +    K G    V L D
Sbjct: 132 ACDEDGVIGLRDRALIELLYASGARISEISRLDVGDIDRERRQVTLLGKGGKERIVPLYD 191

Query: 240 ------------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--S 285
                           L+       E  F++   ++M+A      F+ +   AG++   +
Sbjct: 192 MCIDELDAYLLTARPALVVRGEGASEALFVSTRGRRMSAAALREAFERRVRLAGLDADIT 251

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGI 333
            H +R   AT     GA    +    G  ++   + YT    DR++   
Sbjct: 252 PHAMRHTYATELLSGGADLRSVQELLGHSSLSTTQIYTHLSVDRLKAAA 300


>gi|56963097|ref|YP_174824.1| phage-related integrase/recombinase [Bacillus clausii KSM-K16]
 gi|56909336|dbj|BAD63863.1| phage-related integrase/recombinase [Bacillus clausii KSM-K16]
          Length = 321

 Score =  129 bits (324), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 42/277 (15%), Positives = 95/277 (34%), Gaps = 22/277 (7%)

Query: 70  TLKWLISEYRKSAHWGSLAVNS-------RISFESYFDQIIRKSGDFDYRKITTKHIRSG 122
           T +  +  + +     + A  +          F+    ++              +     
Sbjct: 25  TFEKAVELFIRDVKLKNRADATVTFYKNELKGFKRTLKEMNLPIEPAKVTPFMIEEFAFH 84

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           +        +    L ++R LF +  ++  +  NP   ++  K     I P++K+ +Q+ 
Sbjct: 85  MMEEGSKAGAVNARLRAVRALFNFLFKKRLIPENPVADLKLLKNIKGDIIPFSKDQLQRL 144

Query: 183 KSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVE 236
            +        G +  +    +L +G+R  + C+  +  +   +N   I+  K G +  V 
Sbjct: 145 FNQADRRTFTGLRNYVMMMVMLDTGVRVKELCQIDMVDVLWDDNSIVIRHPKNGYVRRVP 204

Query: 237 LPDGFMKLL------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAH 287
           + +  +K L          IG    F+  D ++++  Q   +       A +     S H
Sbjct: 205 ISEETIKALEQYVNHRGQNIGNNALFVTLDDKRISKRQVQNFLSQYGKGASITDVRCSPH 264

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             R   A ++   GA   EL    G  +++    Y  
Sbjct: 265 TFRHTFAKMALQGGANMFELQQILGHSSLEMVRVYVH 301


>gi|218767874|ref|YP_002342386.1| putative integrase/recombinase [Neisseria meningitidis Z2491]
 gi|34223068|sp|Q9JV76|XERD_NEIMA RecName: Full=Tyrosine recombinase xerD
 gi|121051882|emb|CAM08188.1| putative integrase/recombinase [Neisseria meningitidis Z2491]
 gi|319410121|emb|CBY90457.1| tyrosine recombinase XerD [Neisseria meningitidis WUE 2594]
          Length = 291

 Score =  129 bits (324), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 46/280 (16%), Positives = 98/280 (35%), Gaps = 21/280 (7%)

Query: 74  LISEYRKSAHWGS--LAVNSRISFESYFDQIIRKSGDFD--YRKITTKHIRSGVESRKHT 129
           LI    ++  W    L  N+   +    ++I R+        +      + + V      
Sbjct: 5   LIDRLLETL-WLDRRLNQNTLNGYRRDLEKIARRLSQSGRMLKDADEADLAAAVYVDGEQ 63

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---- 185
            SS  + L++ + L+ W  R+     NP   ++ PK         T++ + +  +     
Sbjct: 64  RSSQARALSACKRLYIWMEREGIRTDNPTRLLKPPKIDKNIPTLITEQQISRLLAAPDTD 123

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG---- 240
              G + +   E +  +GLR S++      ++  +   I    K      V +       
Sbjct: 124 TPHGLRDKALLELMYATGLRVSEAVGLNFGNVDLDRGCITALGKGDKQRMVPMGQESAYW 183

Query: 241 ----FMKLLAMTPIGK--ETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFS 293
               + +       G+  +  F++  K  ++     +  K  A++AG+   S H +R   
Sbjct: 184 VGRYYTEARPALLKGRSCDALFVSQKKTGISRQLAWMIVKEYASQAGIGHISPHSLRHAF 243

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           AT     G     +    G   ++  + YT  A+    G+
Sbjct: 244 ATHLVQHGLDLRVVQDMLGHADLNTTQIYTHVANVWLQGV 283


>gi|307566131|ref|ZP_07628589.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
 gi|307345319|gb|EFN90698.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
          Length = 407

 Score =  129 bits (324), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 51/274 (18%), Positives = 100/274 (36%), Gaps = 25/274 (9%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR------KHT 129
             Y  S     L +  +I+   + D +  +   +++        +  +E        +  
Sbjct: 128 QAYIDSYTKKDLRMI-KIALNRFKDFLKEQYPLYEFSIKPDLITKDMMERFVEYLQSRSV 186

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR--PWTKEDMQQFKSFWS 187
              A       + + ++A+  E +  +PC  V   K   + +R    + +++Q       
Sbjct: 187 GEGAKSIYQRFKKVVRYAIDHEVMLKDPCKDV-VCKVDDQILRKDVLSMDEIQSLIQCHY 245

Query: 188 EGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTG-----TIITVELP 238
           +   P  R AF   LY GLR  D      +++   N +   +  KT      + + + L 
Sbjct: 246 DNENPNVRRAFILCLYCGLRFCDVKDLTYKNIDYTNRLLKFEQNKTKGHSAHSGVVIPLN 305

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATI 296
           DG + L+   P   ++   N      +    S   K    +AG+NK  S H  R   A  
Sbjct: 306 DGLLSLIGDAPEDLDSSIFNLP----SYESCSKSVKRWVKRAGINKHISWHCARHSFAVN 361

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
             + GA    + +  G   +   E YT+  D+++
Sbjct: 362 ILNNGANIKTVASLLGHSGLKHTEKYTRAVDKLK 395


>gi|304387940|ref|ZP_07370113.1| tyrosine recombinase XerD [Neisseria meningitidis ATCC 13091]
 gi|304338037|gb|EFM04174.1| tyrosine recombinase XerD [Neisseria meningitidis ATCC 13091]
          Length = 291

 Score =  129 bits (324), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 46/280 (16%), Positives = 95/280 (33%), Gaps = 21/280 (7%)

Query: 74  LISEYRKSAHWGS--LAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRKHT 129
           LI    ++  W    L+ N+   +    ++I R+        +      + + V      
Sbjct: 5   LIDRLLETL-WLDRRLSQNTLNGYRRDLEKIARRLSQSGRTLKDADEADLAAAVYVDGEQ 63

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---- 185
            SS  + L++ + L+ W  R+     NP   ++ PK         T++ + +  +     
Sbjct: 64  RSSQARALSACKRLYIWMEREGIRTDNPTRLLKPPKIDKNIPTLITEQQISRLLATPDTD 123

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG---- 240
              G + +   E +  +GLR S++       +      I    K      V +       
Sbjct: 124 TPHGLRDKALLELMYATGLRVSEAVGLNFGSVDLGRGCITALGKGDKQRMVPMGQESAYW 183

Query: 241 ------FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFS 293
                   + L +     +  F++  K  ++     +  K  A +AG+   S H +R   
Sbjct: 184 VERYYTEARPLLLKGRSCDALFVSQKKTGISRQLAWMIVKEYAGRAGIGHISPHSLRHAF 243

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           AT     G     +    G   ++  + YT  A+    G+
Sbjct: 244 ATHLVQHGLDLRVVQDMLGHADLNTTQIYTHVANVWLQGV 283


>gi|160900549|ref|YP_001566131.1| tyrosine recombinase XerD [Delftia acidovorans SPH-1]
 gi|160366133|gb|ABX37746.1| tyrosine recombinase XerD [Delftia acidovorans SPH-1]
          Length = 327

 Score =  129 bits (324), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 43/274 (15%), Positives = 88/274 (32%), Gaps = 23/274 (8%)

Query: 86  SLAVNSRISFESYF----DQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTS 139
            L+ N+  ++          +  +             ++     R  +   SS+ + LT 
Sbjct: 49  GLSRNTLAAYRRDLTAWGRWLAHQQPPLALDAAGELELQGYFAVRVEQTKASSSNRRLTV 108

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195
           +R  + WA+R++ +A +P   +   ++        T+  ++            G + R  
Sbjct: 109 LRRYYHWALREQRIAADPTARMLAARQPPRVPHTLTQAQVEALLRAPDVDTPLGLRDRAM 168

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV--------ELPDGFMKLLAM 247
            E +  SGLR S+     +  +      ++    G    +           + ++     
Sbjct: 169 LELMYASGLRVSELVDLPLHGIDLRSGVLRVTGKGQKERLVPFGQEAHWWLERYLATARG 228

Query: 248 TPIGK---ETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGA 302
             +G    +  F+      M+   F +  K  A  AGV    S H +R   AT   + GA
Sbjct: 229 AILGGQRSDAVFVTQRGAAMSRVMFWVIVKRCAQVAGVTAPLSPHTLRHAFATHLLNHGA 288

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
               +    G   +     YT  A      +   
Sbjct: 289 DLRVVQMLLGHADISTTTIYTHVARERLKALHAL 322


>gi|167036461|ref|YP_001664039.1| phage integrase family protein [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|320114886|ref|YP_004185045.1| integrase family protein [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
 gi|166855295|gb|ABY93703.1| phage integrase family protein [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|319927977|gb|ADV78662.1| integrase family protein [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
          Length = 373

 Score =  129 bits (324), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 59/331 (17%), Positives = 117/331 (35%), Gaps = 40/331 (12%)

Query: 49  SALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSG 107
            AL     K E          TL+  I+E+ K       A  + +S +S  D  II   G
Sbjct: 42  KALAEIIAKIEKNEFIEPSKITLQQFINEWLKIYGEPKWAPKTLVSNKSLIDNYIIPNLG 101

Query: 108 DFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP 164
             + +K+    I+    S K      ++       +  + K+AV+ +Y+A NPC  VE P
Sbjct: 102 HIELQKLKPVEIQKFYNSLKEKQLSNTTINYVHRLLNQVLKFAVKWQYIAKNPCELVEAP 161

Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
           K+  +    W  E +++ K  + + +   +     LY+GLR  + C    + +     +I
Sbjct: 162 KKDKKEFVTWNFEHVKKAKKIFKD-TPIYIHVMIALYTGLRLGEICGLRWEDIDFKNQTI 220

Query: 225 KTQKTGTIIT----------------VELPDGFMKLLAMTPIGK---------------E 253
             ++T   I                 + +PD  +++L      +               E
Sbjct: 221 TVRRTAQRIDGRFIFKEPKTETSKGIISIPDFLVQILKQEKNKQLQNKLIFGEKYITEYE 280

Query: 254 TFF-INNDKQKMNATQFSIWFKAK-ATKAGVNK-SAHGVRKFSATISADAGATAHELMAT 310
            F  +  D +       +  F+     ++ +     H +R   AT+   +G     +   
Sbjct: 281 GFISVWEDGRFKEPDYVTKKFRKILKKQSDIPVIRFHDLRHTHATLMLRSGVDLKIISKR 340

Query: 311 YGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
                +     +    D + +  +  R++ S
Sbjct: 341 LRHGRISTTADFYSHVD-LEMDREALRKLES 370


>gi|85059134|ref|YP_454836.1| putative phage integrase [Sodalis glossinidius str. 'morsitans']
 gi|84779654|dbj|BAE74431.1| putative phage integrase [Sodalis glossinidius str. 'morsitans']
          Length = 281

 Score =  129 bits (324), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 40/237 (16%), Positives = 81/237 (34%), Gaps = 10/237 (4%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD 110
           +     K E + +  +KP T   L  ++  S ++  L   ++  +  +  ++    G+  
Sbjct: 43  IAAVWKKYEEVVNQARKPITFSQLWEKFISSTYFIELKPRTQQDYMQHQKKLFSVFGEMK 102

Query: 111 YRKITTKHIRSGVESRK-HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
              I  +H+R  ++ R     + A   + SM  +++W   + YV  NPC  V + K    
Sbjct: 103 ADGIKPEHVREFMDKRGLQRKTQANHEMASMSRVYRWGYERGYVKANPCAGVMKFKAVKR 162

Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229
                 +E +  +++        ++A E       R SD      Q +      I+  KT
Sbjct: 163 DRHITDEEYLAIYRAADDI---VKIAMEIAYLCAARLSDVLGMKWQQITEQGIFIQQGKT 219

Query: 230 GTIITVELPDGFMKLLAMTPI------GKETFFINNDKQKMNATQFSIWFKAKATKA 280
           G              +    +            +   K   +   FS  +    +KA
Sbjct: 220 GIKQIKAWTPRIQAAIDRAKVFSTPANATSAVIMGQHKGHYSKRGFSNRWMEARSKA 276


>gi|294102502|ref|YP_003554360.1| integrase family protein [Aminobacterium colombiense DSM 12261]
 gi|293617482|gb|ADE57636.1| integrase family protein [Aminobacterium colombiense DSM 12261]
          Length = 297

 Score =  129 bits (324), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 38/268 (14%), Positives = 99/268 (36%), Gaps = 16/268 (5%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----- 124
           L + +  Y +   +  S+++ +  ++    +Q +    + +   ++    R   E     
Sbjct: 7   LSFALDYYLEQMRFAKSMSMYTIENYAVDLNQFVNYLLEQNVTLLSEVDTRIIREYLRVL 66

Query: 125 -SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
            S  +  SS  + L++++  F + V ++ V  +P  +V+ P+      R  + E + +  
Sbjct: 67  ASFGYARSSVARKLSAIKNWFAFLVDKKLVGKDPAKNVKGPRLPGRLPRALSVEQVSRLI 126

Query: 184 ----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELP 238
               +  ++  + +   E L   GLR  +      + +      ++ +  G     + + 
Sbjct: 127 EVGCAKSADPLRDKAVLELLYGCGLRIGELVVLRWEDIDFAERWVRVRGKGNKERMIPVG 186

Query: 239 DGFMKLLAMTPIGKET---FFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSA 294
              +K L       +     F   +   +            A +AG++  + H +R   A
Sbjct: 187 KMAIKALYNWRDSCQMGIFLFTGEEGSHLTVRTVGRIVDRAAKRAGLSGVTPHMLRHSFA 246

Query: 295 TISADAGATAHELMATYGWKTVDQAETY 322
           T   + GA+   +    G +++   + Y
Sbjct: 247 THMLEGGASIRVVQELLGHESLITTQRY 274


>gi|213616311|ref|ZP_03372137.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 267

 Score =  129 bits (324), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 39/233 (16%), Positives = 80/233 (34%), Gaps = 18/233 (7%)

Query: 112 RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
           +    + + +      +  +S+ + L++MR  F+   R++Y   +P   +  PK      
Sbjct: 20  QADDLQTLLAERVEGGYKATSSARLLSAMRRFFQHLYREKYREDDPSAQLASPKLPQRLP 79

Query: 172 RPWTKEDMQQFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT- 226
           +  ++  +++             + +   E L  +GLR S+     +  +      ++  
Sbjct: 80  KDLSEAQVERLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVI 139

Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFIN----------NDKQKMNATQFSIWFKAK 276
            K      V L +  +  L         + +N             Q+M    F    K  
Sbjct: 140 GKGNKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHY 199

Query: 277 ATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           A  AG++    S H +R   AT   + GA    +    G   +   + YT  A
Sbjct: 200 AVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA 252


>gi|94969887|ref|YP_591935.1| tyrosine recombinase XerC subunit [Candidatus Koribacter versatilis
           Ellin345]
 gi|94551937|gb|ABF41861.1| tyrosine recombinase XerC subunit [Candidatus Koribacter versatilis
           Ellin345]
          Length = 300

 Score =  129 bits (324), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 55/284 (19%), Positives = 103/284 (36%), Gaps = 27/284 (9%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHTP 130
           ++++ +S    + +V++  ++ +  ++     G   +  I    IR  +    +     P
Sbjct: 10  VAQFLRSLKEKNSSVHTIKAYTTDLEEFSAFLGPAKWDDIDHVRIRGFLSHLYDKGLSKP 69

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM-----QQFKSF 185
           S A + L ++R L+KW  R+ +V  NP   V  PK   +  R  T E++      +    
Sbjct: 70  SVA-RALAALRSLYKWLAREGFVEQNPAALVATPKLPKKLPRVPTMEELNTVMDAEMPEA 128

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDG--- 240
            S   +  L FE L   G+R S+     +  ++  N    I+  K      V   D    
Sbjct: 129 ASFPERDALIFELLYGCGIRNSELTGINLDDIRWSNEAILIR-GKGKKERFVPFGDAAAV 187

Query: 241 --------FMKLLAMTPIGKETFFINNDK-QKMNATQFSIWFKAKATKAGVNKS--AHGV 289
                      +LA          IN    Q++ +       K  A   G+      H +
Sbjct: 188 AAKVYLKKRQDILAERHKSTNALLINLRDVQRLTSRSVGRIVKKIAVARGLPADVHPHTL 247

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           R    T   + GA    +    G + +   + YT+ + R  L +
Sbjct: 248 RHAFGTHLLEEGADLRAIQELLGHERLATTQRYTQLSTRHVLEV 291


>gi|281602227|gb|ADA75211.1| Tyrosine recombinase xerD [Shigella flexneri 2002017]
          Length = 273

 Score =  129 bits (324), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 38/256 (14%), Positives = 86/256 (33%), Gaps = 23/256 (8%)

Query: 94  SFESYFDQIIRKSGDFDY-----RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAV 148
           ++      ++             +    + + +      +  +S+ + L+++R LF++  
Sbjct: 3   AYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGYKATSSARLLSAVRRLFQYLY 62

Query: 149 RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFEFLLYSGL 204
           R+++   +P   +  PK      +  ++  +++             + +   E L  +GL
Sbjct: 63  REKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLIDQPLELRDKAMLEVLYATGL 122

Query: 205 RCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKETFFIN----- 258
           R S+     +  +      ++   K      V L +  +  L         + +N     
Sbjct: 123 RVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRPWLLNGVSID 182

Query: 259 -----NDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMAT 310
                   Q+M    F    K  A  AG++    S H +R   AT   + GA    +   
Sbjct: 183 VLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQML 242

Query: 311 YGWKTVDQAETYTKGA 326
            G   +   + YT  A
Sbjct: 243 LGHSDLSTTQIYTHVA 258


>gi|261343068|ref|ZP_05970926.1| tyrosine recombinase XerC [Enterobacter cancerogenus ATCC 35316]
 gi|288314633|gb|EFC53571.1| tyrosine recombinase XerC [Enterobacter cancerogenus ATCC 35316]
          Length = 300

 Score =  129 bits (324), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 44/259 (16%), Positives = 93/259 (35%), Gaps = 19/259 (7%)

Query: 85  GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLT 138
             L+  + ++++   D I     + G   +++     +R  V     +K +P+S    L+
Sbjct: 21  RQLSPVTLLNYQRQLDAIMQIADEIGLKSWQQCDAATVRGFVVRSRKKKLSPASLALRLS 80

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WSEGSQPRLA 195
           ++R  F W V Q  +  NP   +  PK      +    +D+ +            + R  
Sbjct: 81  ALRSFFDWLVSQGVLKANPAKGIATPKAPRHLPKNIDVDDVNRLLDIDLNDPLAVRDRAM 140

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT--------VELPDGFMKLLAM 247
            E +  +GLR S+     ++HL      +     G+           V   + ++ L  +
Sbjct: 141 LEVMYGAGLRLSELVNLDLKHLDLESGEVWVMGKGSKERRLPIGRNAVSWIEHWLDLRGL 200

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAH 305
               +   F++   ++++A      F     K G+N     H +R   AT   ++     
Sbjct: 201 FGAEENALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVHPHKLRHSFATHMLESSGDLR 260

Query: 306 ELMATYGWKTVDQAETYTK 324
            +    G   +   + YT 
Sbjct: 261 GVQELLGHANLSTTQIYTH 279


>gi|239816431|ref|YP_002945341.1| tyrosine recombinase XerD [Variovorax paradoxus S110]
 gi|239803008|gb|ACS20075.1| tyrosine recombinase XerD [Variovorax paradoxus S110]
          Length = 303

 Score =  129 bits (324), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 48/270 (17%), Positives = 96/270 (35%), Gaps = 25/270 (9%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDFD-------YRKITTKHIRSGVESRKHTPSSAIQFLT 138
            L+ N+  ++        +  G           ++   +       S +   +SA + LT
Sbjct: 24  GLSKNTLAAYRRDLALFAQWLGSQRSGRALDTAQESDLQAYMGARLSTRGKATSANRRLT 83

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194
             +  ++WA+R+  +A +P + +   ++    I+  +++ +    +        G + R 
Sbjct: 84  VFKRYYRWALRERRIAADPSIRLAPARQMPRAIKTLSEKQVDDLLAAPDVETPLGLRDRA 143

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLL 245
             E +  SGLR S+     V  +  N   ++    G+   +          +     +  
Sbjct: 144 MLELMYASGLRVSELVALKVIDMSLNDGVLRVLGKGSKERLVPFGGEARRWIERYLDESR 203

Query: 246 AMTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAG 301
                G++T   F+      M    F I  K +A  AG++   S H +R   AT   + G
Sbjct: 204 PTILDGQQTPDLFVTARGAGMTRVMFWIIVKKQAAAAGIHVPLSPHTLRHAFATHLLNRG 263

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRL 331
                +    G   +     YT  A R RL
Sbjct: 264 VDLRAVQLLLGHADISTTTIYTHVA-RERL 292


>gi|302871811|ref|YP_003840447.1| integrase family protein [Caldicellulosiruptor obsidiansis OB47]
 gi|302574670|gb|ADL42461.1| integrase family protein [Caldicellulosiruptor obsidiansis OB47]
          Length = 328

 Score =  129 bits (323), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 55/285 (19%), Positives = 107/285 (37%), Gaps = 24/285 (8%)

Query: 66  KKPTTLKWL---ISEYRKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRS 121
           K P T+K     +  + +      L V ++I      + I +        + IT  ++  
Sbjct: 23  KSPNTIKEYYYDLRTFLRYLKAKDLNVLNQIEKIEDLENIDVSSFEIEKLKTITLSNLYE 82

Query: 122 GVE----SRKHTPSSAIQFLTSMRVLFKWAV-RQEYVAINPCLSVERPKRKTEGIRPWTK 176
                     ++P S  + + S+R  FK+   + + +  NP   +E PK      R  T 
Sbjct: 83  YFSFLATRFNNSPYSRARKVASIRSFFKYLYSKAKLIPDNPAKDLESPKLGKRNPRYLTL 142

Query: 177 EDMQQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234
           E+ ++  S     ++ R        L  GLR S+     +  +++++  I   K      
Sbjct: 143 EESKKLLSAIDGENKERDFAIITLFLNCGLRLSELVNINLSDIKDDMLRI-VGKGNKERI 201

Query: 235 VELPDGFMKL----LAMTPI----GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284
           + L     +     L + P      K+  F++  K++++        +     AG+N+  
Sbjct: 202 IYLNKACKEAIENYLKVRPTEGVKDKDALFLSERKKRISRRTVQYIVEKYVKMAGINQKK 261

Query: 285 -SAHGVRKFSATISADAGA-TAHELMATYGWKTVDQAETYTKGAD 327
            SAH +R  +AT+    G      L    G +++   E YT   D
Sbjct: 262 ISAHKLRHTAATLMYRHGKVDIRSLQTILGHQSISTTEIYTHVND 306


>gi|266621718|ref|ZP_06114653.1| integrase/recombinase XerD [Clostridium hathewayi DSM 13479]
 gi|288866619|gb|EFC98917.1| integrase/recombinase XerD [Clostridium hathewayi DSM 13479]
          Length = 295

 Score =  129 bits (323), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 45/260 (17%), Positives = 93/260 (35%), Gaps = 22/260 (8%)

Query: 85  GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSG---VESRKHTPSSAIQFLT 138
              + N+ +S+     Q+   + + G  D  K+T   + S    +E      ++  + L 
Sbjct: 16  KKTSKNTEVSYHRDLLQMASYLEEQGITDVEKVTKTSLNSYVLHLEKEGRATTTISRTLA 75

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRL 194
           SM+  F +   +  +  +P   ++ PK + +     T E++            +  + + 
Sbjct: 76  SMKAFFHYEYGEGRIRRDPAELIKAPKIEKKAPTILTVEEVNSLLEQPTGDSPKELRDKA 135

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL--------A 246
             E L  +G+R S+     V+ +   +  I  +       +       + +        A
Sbjct: 136 MLELLYATGIRVSELIHLKVEDMNLAVGFITCRDEHKERMIPFGKVARQAMVNYMESGRA 195

Query: 247 MTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGA 302
               G+E+   F N   + M+   F    K    KAG+  + + H +R   A      GA
Sbjct: 196 SLLKGQESEWLFTNCSGRPMSRQGFWKIIKYYGEKAGIQADITPHTLRHSFAAHLLGNGA 255

Query: 303 TAHELMATYGWKTVDQAETY 322
             H + A  G   +   + Y
Sbjct: 256 DIHAVQAMMGHSDMATTQMY 275


>gi|9634162|ref|NP_037720.1| integrase [Enterobacteria phage HK97]
 gi|218694191|ref|YP_002401858.1| Integrase from phage [Escherichia coli 55989]
 gi|309797063|ref|ZP_07691462.1| phage integrase, SAM-like domain protein [Escherichia coli MS
           145-7]
 gi|331676448|ref|ZP_08377145.1| integrase [Escherichia coli H591]
 gi|6901591|gb|AAF31094.1|AF069529_7 integrase [Enterobacteria phage HK97]
 gi|218350923|emb|CAU96623.1| Integrase from phage [Escherichia coli 55989]
 gi|308119346|gb|EFO56608.1| phage integrase, SAM-like domain protein [Escherichia coli MS
           145-7]
 gi|331075941|gb|EGI47238.1| integrase [Escherichia coli H591]
          Length = 356

 Score =  129 bits (323), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 62/343 (18%), Positives = 115/343 (33%), Gaps = 25/343 (7%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHE---STFIPAYMSALTGSTPKREYINS 63
           LPP +     R+     Y     G+   L        +  I A +   +G   K      
Sbjct: 12  LPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLTARI 68

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
                 TL   +  Y K      +   + I++ S    I R   D     ITTK I + +
Sbjct: 69  NSDNSVTLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAML 128

Query: 124 ESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
                    +SA    +++   F+ A+ + ++  NP  +    K +    R    E ++ 
Sbjct: 129 NGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEYLKI 188

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE----- 236
           +++  S     RLA E  + +G R  D C      + +    ++  KTG  I +      
Sbjct: 189 YQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTALHV 248

Query: 237 ----LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NKSAH 287
               +            +G ET   +  ++ +++   S +F      +G+       + H
Sbjct: 249 DALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPPTFH 308

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
            +R   +    +   +        G K+   A  Y    DR R
Sbjct: 309 ELR-SLSARLYEKQISDKFAQHLLGHKSDTMASQY--RDDRGR 348


>gi|4490352|emb|CAB38715.1| integrase-like protein [Enterobacteria phage H19J]
          Length = 357

 Score =  129 bits (323), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 60/341 (17%), Positives = 110/341 (32%), Gaps = 23/341 (6%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMS---ALTGSTPKREYINS 63
           LPP +     R+     Y     G+   L          A  +    L+ S  K      
Sbjct: 12  LPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELLSDSGRKSLIDRI 68

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
                 TL   +  Y +      +   + + + S    I RK  D     I+TK + + +
Sbjct: 69  KGGDAITLHVWLDRYERILTERGIRPKTLLDYASKIRAIRRKLPDKPLTDISTKEVAAML 128

Query: 124 ESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
            +   +   +SA    +++  +F+ A+ + +VA NP  +    K +    R    E ++ 
Sbjct: 129 NTNVAEGKAASAKLIRSTLVDVFREAIAEGHVATNPVTATRTAKSEVRRSRLTANEYVEI 188

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241
           + +        RLA +  + +G R  D CR     + +N   I+  KTG  + + L    
Sbjct: 189 YHAAEPLPIWLRLAMDLAVVTGQRVGDLCRMKWSDINDNHLHIEQSKTGAKLAIPLTLTI 248

Query: 242 MKL---------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NKSAH 287
             L                 ET   +     ++    S +F      +G+       + H
Sbjct: 249 DALNISLADTLQKCREASSSETIIASKHHDPLSPKTVSKYFTKARNASGLSFDGNPPTFH 308

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
            +R   +                 G K+   A  Y     R
Sbjct: 309 ELR-SLSARLYRNQIGDKFAQRLLGHKSDLMAARYRDSRGR 348


>gi|256832498|ref|YP_003161225.1| tyrosine recombinase XerD [Jonesia denitrificans DSM 20603]
 gi|256686029|gb|ACV08922.1| tyrosine recombinase XerD [Jonesia denitrificans DSM 20603]
          Length = 310

 Score =  129 bits (323), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 49/278 (17%), Positives = 93/278 (33%), Gaps = 32/278 (11%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYR---------KITTKHIRSGVESRKHTPSSAIQ 135
             ++ N+  ++     + +      +                 +R G   +  + SS  +
Sbjct: 21  RGVSPNTLAAYRRDLARYLDYLSHRELSLHSVTQSTIDDFLVALREGSLGQSLSQSSVSR 80

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQ 191
            L S+R L ++A  +  VA +P +SV  PK         +  D+++  +        G +
Sbjct: 81  HLASLRGLHRYAEAEGVVAGDPAVSVRPPKLPQRLPDVLSTHDVERLLTTPPLDSAVGLR 140

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKT-QKTGTIITVEL----------- 237
            R   EFL  +G R S+        +   +     +   K      V +           
Sbjct: 141 DRALLEFLYATGARISEVVGLDRDDVIADDGFVVARVLGKGHKERLVPVGSCAYDALNAY 200

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK----SAHGVRKFS 293
                  LA   +G    F+N   ++++        ++ A  A +      S H +R   
Sbjct: 201 LVRARPELAGAGVGTPALFLNTRGRRLSRQSAFGVVRSAARLAAIPGAESVSPHTLRHCF 260

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330
           AT     GA    +    G  +V   + YT   AD +R
Sbjct: 261 ATHMLSGGADIRVVQELLGHASVTTTQIYTHVSADALR 298


>gi|320195935|gb|EFW70559.1| Phage integrase [Escherichia coli WV_060327]
          Length = 303

 Score =  129 bits (323), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 52/296 (17%), Positives = 100/296 (33%), Gaps = 21/296 (7%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD 110
           L+G+  +            TL   +  Y        +   + + + S    I RK  D  
Sbjct: 2   LSGNRRESLIDRIKGADAITLHAWLDRYETILSERGIRPKTLLDYASKIRAIRRKLPDKP 61

Query: 111 YRKITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168
              I+TK + + + +   +   +SA    +++  +F+ A+ + +VA NP  +    K + 
Sbjct: 62  LADISTKEVAAMLNTYVAEGKAASAKLIRSTLVDVFREAIAEGHVATNPVTATRTAKSEV 121

Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
              R    E +    +        RLA +  + +G R  D C+     + +N   I+  K
Sbjct: 122 RRSRLTANEYVAIHHAAEPLPIWLRLAMDLAVVTGQRVGDLCKMKWSDINDNHLHIEQGK 181

Query: 229 TGTIITVELP-----------DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKA 277
           TG  + + L            D   K   +   G ET   +   + ++    S +F    
Sbjct: 182 TGAKLAIPLTLTIDALNISLADTLQKCREV--SGSETIIASTHHEPLSPKTVSKYFTKAR 239

Query: 278 TKAGV-----NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
             +G+       + H +R   +                 G K+   A  Y     R
Sbjct: 240 NASGLSFDGDPPTFHELR-SLSARLYRNQIGDKFAQRLLGHKSDSMAARYRDSRGR 294


>gi|171057831|ref|YP_001790180.1| tyrosine recombinase XerD [Leptothrix cholodnii SP-6]
 gi|170775276|gb|ACB33415.1| tyrosine recombinase XerD [Leptothrix cholodnii SP-6]
          Length = 286

 Score =  129 bits (323), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 46/274 (16%), Positives = 93/274 (33%), Gaps = 23/274 (8%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRKITTK---HIRSGVESR--KHTPSSAIQFLTSM 140
            L+ N+  ++      +           +      H+   + +R  +   S+A + LT  
Sbjct: 9   GLSKNTLAAYRRDLQGLAAALPAQQSAGLLQASEAHLLGVITARHAQTRASTANRRLTVF 68

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAF 196
           +  ++WA+R+   + +P L +   ++        ++  ++   +        G + R  F
Sbjct: 69  KRFYRWALREALCSADPTLRLSAARQPKRLPGTLSEAQVEALLAAPALDTPLGLRDRAMF 128

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLLAM 247
           E +  +GLR S+        L      +K    G    +          +     +    
Sbjct: 129 ELMYGAGLRVSELVSIRTLQLALVDQVLKVLGKGAKERLVPFGGEARHWIERYLTEARPA 188

Query: 248 TPIGK--ETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGAT 303
              G+  +  F+      M         K  A +AG+    S H +R   AT   + GA 
Sbjct: 189 LLAGRKCDALFVTVRCAGMTRQMAWNLVKKYARQAGITVPLSPHTLRHAFATHLLNHGAD 248

Query: 304 AHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
              +    G   +   + YT  A R RL   ++R
Sbjct: 249 LRAVQLLLGHADISTTQIYTHVA-RERLKQLHAR 281


>gi|282164156|ref|YP_003356541.1| putative site-specific recombinase [Methanocella paludicola SANAE]
 gi|282156470|dbj|BAI61558.1| putative site-specific recombinase [Methanocella paludicola SANAE]
          Length = 272

 Score =  129 bits (323), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 43/249 (17%), Positives = 91/249 (36%), Gaps = 20/249 (8%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----SRKHTPSSAIQFLTSMRVL 143
           + N+   +        ++       ++    I   +      +  + +     ++ ++  
Sbjct: 16  SPNTIKQYGLILHNF-QEFCSKPLDQVNRHEIIRYLNHLMFEQNRSKAYVSNIMSIIKSF 74

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203
           + + V  EY+  NP   +   K   +     T+++M+       +  +  L  + L  +G
Sbjct: 75  YSFLVENEYITANPAKGISSVKIDKKAPIYLTQDEMRALIETALDP-RDNLIVKMLYATG 133

Query: 204 LRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLL----AMTPIGKETFFIN 258
           +R S+      Q +  +  +IK   K      V +PD     L    A  P G++ F +N
Sbjct: 134 VRVSELVNIKKQDIDLDRNTIKVFGKGAKERIVLVPDVLKAQLETYCAGFPEGQKLFDLN 193

Query: 259 NDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTV 316
               + +        KA A +AG+NK  + H +R   AT     G     +    G  ++
Sbjct: 194 IRTVERD-------IKALAVRAGINKKVTPHKLRHSFATHMLQNGGNVVAIQKLLGHTSL 246

Query: 317 DQAETYTKG 325
           +  + YT  
Sbjct: 247 NTTQIYTHY 255


>gi|159044160|ref|YP_001532954.1| tyrosine recombinase [Dinoroseobacter shibae DFL 12]
 gi|157911920|gb|ABV93353.1| tyrosine recombinase [Dinoroseobacter shibae DFL 12]
          Length = 308

 Score =  129 bits (323), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 55/291 (18%), Positives = 108/291 (37%), Gaps = 34/291 (11%)

Query: 70  TLKWLISEYRKS-AHWGSLAVNSRISFESYFD----QIIRKSGDFD-YRKITTKHIRSGV 123
           +L W I  +  + A   + A N+R+++          I R+  DFD  ++   +      
Sbjct: 2   SLHW-IDAFLDAQAAELNAAENTRLAYARDLMDFQGHIRRRGLDFDQVQRADIETYLIAC 60

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
                + ++  + L+++R L+++A  + +   NP L ++ P R     +  ++ D+ +  
Sbjct: 61  SDAGLSQATRARRLSAIRQLYRFAYEEGWRTDNPSLQIKGPGRAKRLPKTLSEADVDRLL 120

Query: 184 SFW-------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITV 235
           +         S+  +     E L  +GLR ++ C   V  ++ +    +   K G    V
Sbjct: 121 AAARNTGRSPSDRQRNACMLELLYATGLRVTELCGLPVAAVRGDPHLILVRGKGGKERMV 180

Query: 236 ELPD----GFMKLLAMTPIGKET----------FFINNDKQ--KMNATQFSIWFKAKATK 279
            L           L +    ++T          +   +  +   +   +F    K  A  
Sbjct: 181 PLSTPARTELQAWLKVRDAAEQTAISKGAAPSKYLFPSRGKLGHLTRHRFYALIKDIAVA 240

Query: 280 AGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           AGV+    + H +R   AT     GA    + A  G   V   E YT   D
Sbjct: 241 AGVDPSGVTPHTLRHAFATHLLARGADLMSIQALLGHADVATTEIYTHVLD 291


>gi|237727927|ref|ZP_04558408.1| site-specific tyrosine recombinase XerC [Citrobacter sp. 30_2]
 gi|226910376|gb|EEH96294.1| site-specific tyrosine recombinase XerC [Citrobacter sp. 30_2]
          Length = 300

 Score =  129 bits (323), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 42/259 (16%), Positives = 87/259 (33%), Gaps = 19/259 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRKHTPSSAIQFLT 138
             L+  + ++++   D II  +G+   +          +        +   P+S    L+
Sbjct: 21  RQLSPITLLNYQRQLDAIIALAGETGLQSWQQCDAAMVRSFAVRSRRKGLGPASLALRLS 80

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLA 195
           ++R  F W V Q  +  NP  SV  PK      +    +D+ +            + R  
Sbjct: 81  ALRSFFDWLVNQGELKANPAKSVSAPKAPRHLPKNIDVDDVNRLLDIDLNDPLAVRDRAM 140

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLAMT------ 248
            E +  +GLR S+     ++HL  +        K      + +    +  +         
Sbjct: 141 LEVMYGAGLRLSELVGLDIKHLDLDTGEVWVMGKGSKERRLPIGRNAVAWIEHWLDLRGL 200

Query: 249 -PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAH 305
                +  F++   ++++A      F     K G+N     H +R   AT   ++     
Sbjct: 201 FGSDDDALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVHPHKLRHSFATHMLESSGDLR 260

Query: 306 ELMATYGWKTVDQAETYTK 324
            +    G   +   + YT 
Sbjct: 261 GVQELLGHANLSTTQIYTH 279


>gi|57640712|ref|YP_183190.1| integrase/recombinase [Thermococcus kodakarensis KOD1]
 gi|73920475|sp|Q5JHA3|XERCL_PYRKO RecName: Full=Probable tyrosine recombinase xerC-like
 gi|57159036|dbj|BAD84966.1| integrase/recombinase [Thermococcus kodakarensis KOD1]
          Length = 282

 Score =  129 bits (323), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 44/282 (15%), Positives = 99/282 (35%), Gaps = 18/282 (6%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           +I E+         + ++   +  Y  + +   GD +          + +    ++  S 
Sbjct: 7   VIEEFETYLDLEGKSPHTIRMYTYYVRRYLEWGGDLNAHS--ALRFLAHLRKNGYSNRSL 64

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-GSQP 192
              + ++R  F++   +     +    ++ PK      +  T+E++++  S       + 
Sbjct: 65  NLVVQALRAYFRF---EGL--DDEAERLKPPKVPRSLPKALTREEVKRLLSVIPPTRKRD 119

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELP----DGFMKLLA 246
           RL    L  +GLR S+ C      +     +  ++  K      V +P    D     L 
Sbjct: 120 RLIVLLLYGAGLRVSELCNLKKDDVDLDRGLIVVRGGKGAKDRVVPIPKYLADEIRAYLE 179

Query: 247 MTPIGKETFFINNDKQ---KMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGAT 303
                 E   + + ++   K++        K    KAGV  + H +R   AT   + G  
Sbjct: 180 SRSDESEYLLVEDRRRRKDKLSTRNVWYLLKRYGQKAGVEVTPHKLRHSFATHLLEEGVD 239

Query: 304 AHELMATYGWKTVDQAETYTK-GADRIRLGIKNSRRISSVVD 344
              +    G   +   + YTK   + +R   + ++ I  ++ 
Sbjct: 240 IRAIQELLGHSNLSTTQIYTKVTVEHLRKAQEKAKLIEKLMG 281


>gi|303241363|ref|ZP_07327867.1| integrase family protein [Acetivibrio cellulolyticus CD2]
 gi|302591096|gb|EFL60840.1| integrase family protein [Acetivibrio cellulolyticus CD2]
          Length = 377

 Score =  129 bits (323), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 62/308 (20%), Positives = 113/308 (36%), Gaps = 37/308 (12%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH 128
           T+   I+ + K+     L   +  S+ES     II   GD   +K+ TK I+     R  
Sbjct: 69  TVSEWINYWLKTYKKNKLKPKTYDSYESLSRITIIPHIGDLPMQKLKTKDIQEMYNKRYE 128

Query: 129 TPSSAIQFLTS---MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
              S+         ++     A+ + Y++ NP   VE P+   + I+ ++ ED + F+  
Sbjct: 129 EGYSSNSIHKVNIVLKSALNKAITEGYISKNPANFVELPEIIKKDIKAFSAEDQKAFEQA 188

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---------------------NNIFSI 224
             + S   +A+   L +GLR S+       ++                      +    I
Sbjct: 189 AKDYSH-YIAYIVNLDTGLRMSELLALTWDNIDFDKAELTVNKNLVSVRDREKEDGFKLI 247

Query: 225 KTQKTG----TIITVELPDGFMKLLAMTPIGKET----FFINNDKQKMNATQFSIWFKAK 276
             + T     +I T+ L    + LL    I ++      F +     +    +S  F+  
Sbjct: 248 VQENTSKTKYSIRTIPLTKRCISLLRKLKIKQQANSNIVFCSKLGTHLTPRNYSRTFQRI 307

Query: 277 ATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGA-DRIRLGI 333
             KA V   + H +R   AT   +AG     +    G  +V    +TYT    +  +  I
Sbjct: 308 VKKAKVEMCNVHTMRHTFATRLFEAGVPPKTISELLGHASVSFTLDTYTHVMPNTKKQAI 367

Query: 334 KNSRRISS 341
               + S+
Sbjct: 368 DMLEQCSN 375


>gi|317405888|gb|EFV86170.1| integrase/recombinase [Achromobacter xylosoxidans C54]
          Length = 327

 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 50/325 (15%), Positives = 97/325 (29%), Gaps = 51/325 (15%)

Query: 59  EYINSPRKKPTTLKWLISE-YRKSAHWGSLAVNSRISFESYF--------------DQII 103
               +P      +   I   + +      L+ N+  ++                   ++ 
Sbjct: 2   PDSRAPLASQADIDAFIDAVWLEDG----LSANTLAAYRRDLTGFARWLEDPEAYAREMA 57

Query: 104 RKSGDFDYRKITTKHIRSGVESRKH--------------TPSSAIQFLTSMRVLFKWAVR 149
            + GD              +                     ++A + L ++R  + WA+R
Sbjct: 58  DRYGDAASAHALPAGPAKALAEAGKADIEAWFAFRHEETRATTANRRLAALRRFYAWALR 117

Query: 150 QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFEFLLYSGLR 205
           +   A +PCL++   K+     +  +++ +             G + R   E L  +GLR
Sbjct: 118 EHRAAHDPCLTLVAAKQPPRLPKTLSEQQVDALLRAPDLNEPRGLRDRAMLEMLYATGLR 177

Query: 206 CSDSCRAGVQHLQNNIFSIKT--QKTGTIITVELPDGFMKLLA----------MTPIGKE 253
            S+        +  N   ++    K G    V L       +                 +
Sbjct: 178 VSELVGVRALDVSLNEGVVRVVLGKGGKDRLVPLGAEAAHWIDQYMKTARPELAAGRVSD 237

Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATY 311
             FI    + M+   F    K  A  AGV+   S H +R   AT   + GA    +    
Sbjct: 238 ALFITGRAEAMSRQAFWQLVKKYAVLAGVHAPLSPHVLRHAFATHLLNHGADLRVVQMLL 297

Query: 312 GWKTVDQAETYTKGADRIRLGIKNS 336
           G   +   + YT  A      +  +
Sbjct: 298 GHADISTTQIYTHVARERLKALHAA 322


>gi|237746680|ref|ZP_04577160.1| site specific integrase/recombinase [Oxalobacter formigenes HOxBLS]
 gi|229378031|gb|EEO28122.1| site specific integrase/recombinase [Oxalobacter formigenes HOxBLS]
          Length = 326

 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 52/290 (17%), Positives = 100/290 (34%), Gaps = 42/290 (14%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMR 141
             L+ N+  S+     Q+   +G+    ++++  IR  V        +P S  + L++ R
Sbjct: 22  RKLSGNTLDSYRRDLAQLTEMAGETGLNRLSSTDIRRFVSRLHASGLSPRSIGRKLSAWR 81

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP--------- 192
             F+W V +  ++ NP   +  PK+     +  + +D  +  S     +           
Sbjct: 82  GFFQWLVDEALLSTNPAEDIHAPKKSKPLPKALSVDDAVRLVSSGPADTNASSAGQAAAL 141

Query: 193 --RLAFEFLLYSGLRCSDSCRAGVQ------HLQNNIFSIK------TQKTGTIITVELP 238
             R  FE L  SGLR S+     +Q      ++      +       T K      V   
Sbjct: 142 CDRAMFELLYSSGLRVSELTGLDIQAVRQAGYVSAGWIDLNEKEVTVTGKGNKTRIVPAG 201

Query: 239 DGFMKLLA-------------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--N 283
           D  +  +                P      F+N+  ++++  Q  +  KA A + G+  N
Sbjct: 202 DAAITAVRNWLAARDNLVHPEALPRDAFALFVNSRGKRISPRQVQLRLKAHAKRLGLPVN 261

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
              H +R   A+    +      +    G  ++   + YT   D   L  
Sbjct: 262 VHPHVLRHSFASHILQSSGDLRAVQEMLGHSSIASTQIYT-ALDFQHLAA 310


>gi|323343426|ref|ZP_08083653.1| integrase [Prevotella oralis ATCC 33269]
 gi|323095245|gb|EFZ37819.1| integrase [Prevotella oralis ATCC 33269]
          Length = 407

 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 55/360 (15%), Positives = 120/360 (33%), Gaps = 50/360 (13%)

Query: 16  TRHGKIIYYFRKG--HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
             +G  + Y         ++ + +      +  Y+ A   +  +R+      +    ++ 
Sbjct: 41  DENGNPVLYETGKMMGKPKVHIKHNRRKENLQLYLIAKPRTPAERQQNKETLELAAKIRA 100

Query: 74  LISE--------YR----KSAHWGSLAVN-----SRISFE-------SYFDQIIRKSGDF 109
              +        YR    ++ ++           ++            + D +  +   +
Sbjct: 101 EREQEFKESMLGYRLKKDRNINFLDYYQAYIDSYTKKDLRMIKIALNRFKDFLKEQYPLY 160

Query: 110 DYRKITTKHIRSGVESR------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163
           ++        +  +E        +     A       + + ++A+  E +  +PC  V  
Sbjct: 161 EFSIKPDLITKDMMEQFVEYLQSRSVGEGAKSIYQRFKKVVRYAIDHEVMLKDPCKGV-V 219

Query: 164 PKRKTEGIR--PWTKEDMQQFKSFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQ- 218
            K   + +R    + +++Q       E   P  R AF F LY GLR  D      +++  
Sbjct: 220 CKVDEQILRKDVLSMDEIQTLIQCHYENENPNVRRAFIFCLYCGLRFCDVKDLTYKNIDY 279

Query: 219 -NNIFSIKTQKTG-----TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW 272
            N +   +  KT      + + + L DG + L+   P    +   N      +       
Sbjct: 280 TNRLLKFEQNKTKGHSAHSGVVIPLNDGLLSLIGDAPDDLNSSIFNLP----SYESCCKS 335

Query: 273 FKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
            K    +AG+NK  S H  R   A    + GA    + +  G   +   E YT+  D+++
Sbjct: 336 VKRWVKRAGINKHISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVDKLK 395


>gi|197287151|ref|YP_002153023.1| site-specific tyrosine recombinase XerC [Proteus mirabilis HI4320]
 gi|227357156|ref|ZP_03841525.1| tyrosine recombinase [Proteus mirabilis ATCC 29906]
 gi|34222763|sp|O31207|XERC_PROMI RecName: Full=Tyrosine recombinase xerC
 gi|2645802|gb|AAB87500.1| site-specific recombinase [Proteus mirabilis]
 gi|194684638|emb|CAR46553.1| tyrosine recombinase [Proteus mirabilis HI4320]
 gi|227162688|gb|EEI47655.1| tyrosine recombinase [Proteus mirabilis ATCC 29906]
          Length = 307

 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 43/279 (15%), Positives = 92/279 (32%), Gaps = 21/279 (7%)

Query: 67  KPTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRK---ITTKHIRSG 122
            P TL   I  +         L+  +  +++     I +        +   + ++H+R  
Sbjct: 7   VPETLSLAIDSFLSYIEVERRLSPVTVENYQRQLMTIAQMMVAIKINQWSLLESQHVRML 66

Query: 123 V---ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
           +         P+S     +++R    W V Q  +A+NP   V  PK      +    +++
Sbjct: 67  LAKSHRSGLQPASLALRFSALRSFLDWQVSQGMLAVNPAKGVRTPKSGRHLPKNMDVDEV 126

Query: 180 QQFKS---FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITV 235
            Q  +         + R   E +  +GLR S+     +  +      ++   K      V
Sbjct: 127 SQLMNIDLKDPLSVRDRTMLEVMYGAGLRLSELTNLNINDIDLQEGEVRVLGKGSKERKV 186

Query: 236 ELPDGFMKLLAM--------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKS 285
            L    ++ L          +P     F      ++++       F+    K G+  + +
Sbjct: 187 PLGRKAVEWLQHWFAMRELYSPEDTAVFISTKSGKRLSVRSVQKRFELWGVKQGLSSHVN 246

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            H +R   AT   ++      +    G   +   + YT 
Sbjct: 247 PHKLRHSFATHLLESSGDLRAVQELLGHANLSTTQVYTH 285


>gi|215485788|ref|YP_002328219.1| predicted integrase [Escherichia coli O127:H6 str. E2348/69]
 gi|260854001|ref|YP_003227892.1| putative integrase [Escherichia coli O26:H11 str. 11368]
 gi|215263860|emb|CAS08198.1| predicted integrase [Escherichia coli O127:H6 str. E2348/69]
 gi|257752650|dbj|BAI24152.1| putative integrase [Escherichia coli O26:H11 str. 11368]
 gi|323155048|gb|EFZ41237.1| integrase [Escherichia coli EPECa14]
          Length = 356

 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 61/343 (17%), Positives = 113/343 (32%), Gaps = 25/343 (7%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMS---ALTGSTPKREYINS 63
           LPP +     R+     Y     G+   L          A  +     +G   K      
Sbjct: 12  LPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLTARI 68

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
                 TL   +  Y K      +   + I++ S    I R   D     ITTK I + +
Sbjct: 69  NSDNSVTLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAML 128

Query: 124 ESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
                    +SA    +++   F+ A+ + ++  NP  +    K +    R    E ++ 
Sbjct: 129 SGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEYLKI 188

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE----- 236
           +++  S     RLA E  + +G R  D C      + +    ++  KTG  I +      
Sbjct: 189 YQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTTLHV 248

Query: 237 ----LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NKSAH 287
               +            +G ET   +  ++ +++   S +F      +G+       + H
Sbjct: 249 DALGISMKETLDKCKEILGGETIIASTHREPLSSGTVSRYFMRARKASGLSFEGDPPTFH 308

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
            +R   +    +   +        G K+   A  Y    DR R
Sbjct: 309 ELR-SLSARLYEKQISDKFAQHLLGHKSDTMASQY--RDDRGR 348


>gi|125973246|ref|YP_001037156.1| site-specific tyrosine recombinase XerC [Clostridium thermocellum
           ATCC 27405]
 gi|256003724|ref|ZP_05428712.1| integrase family protein [Clostridium thermocellum DSM 2360]
 gi|281417446|ref|ZP_06248466.1| integrase family protein [Clostridium thermocellum JW20]
 gi|125713471|gb|ABN51963.1| phage integrase [Clostridium thermocellum ATCC 27405]
 gi|255992285|gb|EEU02379.1| integrase family protein [Clostridium thermocellum DSM 2360]
 gi|281408848|gb|EFB39106.1| integrase family protein [Clostridium thermocellum JW20]
 gi|316940523|gb|ADU74557.1| integrase family protein [Clostridium thermocellum DSM 1313]
          Length = 330

 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 60/272 (22%), Positives = 105/272 (38%), Gaps = 21/272 (7%)

Query: 96  ESYFDQIIRKSGDFDY-RKITTKHIRSGV----ESRKHTPSSAIQFLTSMRVLFKWAV-R 149
           +  FD I  K  D D  +KIT   I S +      R +T SS  + + S+R  F +   +
Sbjct: 55  KKDFDSIDIKDMDIDVIKKITLSDIYSFMSFLSRERDNTASSRARKVASIRSFFNYLTNK 114

Query: 150 QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR--LAFEFLLYSGLRCS 207
            + +  NP   +E PK      R    E+ ++         + R        L  GLR S
Sbjct: 115 AKLLEQNPAAELESPKIMKRLPRYLNIEESKRLLGSIDGEHKERDFAIITLFLNCGLRLS 174

Query: 208 DSCRAGVQHLQNNIFSIKTQKTGTIITVELP----DGFMKLLAMTPI----GKETFFINN 259
           +     + +++N++ ++   K     T+ L           L + P+     K   F+++
Sbjct: 175 ELVNINLSNIKNDVLTV-VGKGNKERTIYLNAACKKALDAYLKVRPVDGVKDKNALFLSS 233

Query: 260 DKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG-ATAHELMATYGWKT 315
            KQ+++        K     AG++    S H +R  +AT+    G      L    G ++
Sbjct: 234 RKQRISNKTVQHIVKKYIKAAGLDPERYSTHKLRHTAATLMYKHGNVDIRALQEILGHES 293

Query: 316 VDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
           +   E YT    +       S  +S+ VD  D
Sbjct: 294 IATTEIYTHVDSQQLKNAVESNPLSTYVDEHD 325


>gi|193066330|ref|ZP_03047380.1| integrase [Escherichia coli E22]
 gi|192926037|gb|EDV80681.1| integrase [Escherichia coli E22]
          Length = 357

 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 61/341 (17%), Positives = 112/341 (32%), Gaps = 23/341 (6%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHE---STFIPAYMSALTGSTPKREYINS 63
           LPP +     R+     Y     G+   L        +  I A +  L+ S  K      
Sbjct: 12  LPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELLSDSGRKSLIDRI 68

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
                 TL   +  Y +      +   + + + S    I RK  D     I+TK + + +
Sbjct: 69  KGGDAITLHVWLDRYERILTERGIRPKTLLDYASKIRAIRRKLPDKPLTDISTKEVAAML 128

Query: 124 ESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
            +   +   +SA    +++  +F+ A+ + +VA NP  +    K +    R    E ++ 
Sbjct: 129 NTYVAEGKAASAKLIRSTLVDVFREAIAEGHVATNPVTATRTAKSEVRRSRLTANEYVEI 188

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241
           + +        RLA +  + +G R  D CR     + +N   I+  KTG  + + L    
Sbjct: 189 YHAAEPLPIWLRLAMDLAVVTGQRVGDLCRMKWSDINDNHLHIEQSKTGAKLAIPLTLTI 248

Query: 242 MKL---------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NKSAH 287
             L                 ET   +     ++    S +F      +G+       + H
Sbjct: 249 DALNISLADTLQKCREASSSETIIASKHHDPLSPKTVSKYFTKARNASGLSFDGNPPTFH 308

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
            +R   +                 G K+   A  Y     R
Sbjct: 309 ELR-SLSARLYRNQIGDKFAQRLLGHKSDLMAARYRDSRGR 348


>gi|258405471|ref|YP_003198213.1| tyrosine recombinase XerD [Desulfohalobium retbaense DSM 5692]
 gi|257797698|gb|ACV68635.1| tyrosine recombinase XerD [Desulfohalobium retbaense DSM 5692]
          Length = 306

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 81/226 (35%), Gaps = 16/226 (7%)

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           ++SR  T  +  + L+S+R  F++         +P   V+ PK   +       ++MQ  
Sbjct: 69  LKSRGLTNRTIARHLSSLRGFFQFLQTSNRRVDDPTAHVDGPKLTRQLPEFLDVQEMQGL 128

Query: 183 KSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVEL 237
            +    G+    + R   E L  +GLR S+  R     + +    ++   K      V L
Sbjct: 129 LAQPDTGTKLGFRDRTILELLYAAGLRVSEVIRLQALDIDSQTGVVRVWGKGAKERLVPL 188

Query: 238 PDGFMKLLAM--------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AH 287
               +  +               +  F+N   + ++        K  A  AG+ +S   H
Sbjct: 189 HPAALDYVRTYVQAWRPQFAPQHKVLFLNRSGRCLSRQAVWKNVKRYAVAAGIRRSISPH 248

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLG 332
            +R   AT   + GA    +    G   +   E YT   A R+R  
Sbjct: 249 TIRHSFATHLLEGGADLRTVQLLLGHADISATEIYTHVQAGRLRAA 294


>gi|189184504|ref|YP_001938289.1| putative integrase [Orientia tsutsugamushi str. Ikeda]
 gi|189184591|ref|YP_001938376.1| putative integrase [Orientia tsutsugamushi str. Ikeda]
 gi|189181275|dbj|BAG41055.1| putative integrase [Orientia tsutsugamushi str. Ikeda]
 gi|189181362|dbj|BAG41142.1| putative integrase [Orientia tsutsugamushi str. Ikeda]
          Length = 399

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 48/202 (23%), Positives = 87/202 (43%), Gaps = 10/202 (4%)

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           ++A QFL ++  +F  A++ E +  NP L +++ K +    R  + ++M +F       +
Sbjct: 175 ATANQFLITLSSIFNKAIKWELIDRNPTLKIDKHKMQARERR-LSYDEMSKFLHVLCGEA 233

Query: 191 QP--RLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLA 246
            P  R      LY+G R ++       ++     I+ I   K G    + L D  +++L 
Sbjct: 234 TPLIRDFALLALYTGARKTNVLEMEWDNIDFVRKIWHIPKTKNGKAQNIPLTDEIIEILQ 293

Query: 247 MTP-IGKETFFINNDKQKMN--ATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGA 302
                 K  + ++ DK K       +  W+K    KAG+ N   H +R+  A+  AD GA
Sbjct: 294 ARKLTSKSKWVLSTDKSKSGHLEYPYRGWYK-ICKKAGIKNLRIHDLRRTFASCMADEGA 352

Query: 303 TAHELMATYGWKTVDQAETYTK 324
             + + A      +     YTK
Sbjct: 353 GQYIISAALNHSDIKSTSIYTK 374


>gi|222529381|ref|YP_002573263.1| site-specific tyrosine recombinase XerC [Caldicellulosiruptor
           bescii DSM 6725]
 gi|222456228|gb|ACM60490.1| integrase family protein [Caldicellulosiruptor bescii DSM 6725]
          Length = 328

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 52/284 (18%), Positives = 104/284 (36%), Gaps = 22/284 (7%)

Query: 66  KKPTTLKWL---ISEYRKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRS 121
           K P T+K     +  + +      L + S+I      + I +        + +T  ++  
Sbjct: 23  KSPNTIKEYYYDLRTFLRYLKAKDLNMLSQIEKIEDLENIDVSNFEIEKLKTLTLSNLYE 82

Query: 122 GVE----SRKHTPSSAIQFLTSMRVLFKWAV-RQEYVAINPCLSVERPKRKTEGIRPWTK 176
                     + P +  + + S+R  FK+   + + +  NP   +E PK      R  T 
Sbjct: 83  YFSFLATRFNNGPYARARKVASIRSFFKYLYSKAKLIPDNPAKDLESPKLGKRNPRYLTL 142

Query: 177 EDMQQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234
            + ++  S     ++ R        L  GLR S+     +  +++++  I  +     I 
Sbjct: 143 NESKKLLSAIDGENKERDFAIITLFLNCGLRLSELVNINLSDIKDDMLRIVGKGNKERII 202

Query: 235 V---ELPDGFMKLLAMTPI----GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--- 284
                  D     L + P      K+  F++  K++++        +     AG+N+   
Sbjct: 203 YLNKACKDAIENYLKVRPTEGVKDKDALFLSERKKRISRRTVQYIVEKYVKMAGINQKKI 262

Query: 285 SAHGVRKFSATISADAGA-TAHELMATYGWKTVDQAETYTKGAD 327
           SAH +R  +AT+    G      L    G +++   E YT   D
Sbjct: 263 SAHKLRHTAATLMYRHGKVDIRSLQTILGHQSISTTEIYTHVND 306


>gi|239628231|ref|ZP_04671262.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239518377|gb|EEQ58243.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 294

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 43/272 (15%), Positives = 89/272 (32%), Gaps = 24/272 (8%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK------HIRSGVESRKHT 129
             Y +       + N+ IS++   +Q+     +    ++              +E     
Sbjct: 9   VSYLRDVR--QTSKNTEISYQRDLNQLAAFLAEKGITEVEKVTRTSLNSYILYLEKEGKA 66

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW--- 186
            ++  + L S++  F +  R+  +  +P   ++ PK + +     +  ++          
Sbjct: 67  TTTISRELASIKAFFSYLFREGMIRRDPSELLKAPKIEKKAPVILSVNEVNSLLDQPGTS 126

Query: 187 -SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE--------L 237
             +  + +   E L  +G+R S+     +  L   I  I  +       V         +
Sbjct: 127 SPKEIRDKAMMELLYATGIRVSELIGLELSDLNMQIGYITCRDGLKERMVPFGKTASQAM 186

Query: 238 PDGFMKLLAMTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293
                +       GKE+   F N   + M+   F    K    KAG+  + + H +R   
Sbjct: 187 SIYLERGRRELLKGKESPWLFTNCSGKAMSRQGFWKIIKYYGEKAGIQADITPHTLRHSF 246

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKG 325
           A      GA  H + A  G      A+ Y   
Sbjct: 247 AAHLIRGGADVHAVQAMLGHSDSTTAQMYAAY 278


>gi|170730333|ref|YP_001775766.1| phage-related integrase [Xylella fastidiosa M12]
 gi|167965126|gb|ACA12136.1| phage-related integrase [Xylella fastidiosa M12]
          Length = 339

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 62/333 (18%), Positives = 113/333 (33%), Gaps = 28/333 (8%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
           +P F  + + + G + YY+  G   R   P          Y  A+     + E+      
Sbjct: 11  IPRFRVRPQ-KSGVVYYYYDHGGKPRKETPLG------RDYGLAI-KRWAELEHAQITPA 62

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVE 124
              T + +   YR      + A +++     Y + +++   D    +  I    IR  ++
Sbjct: 63  IAVTFRHVAERYRAEVI-PTKARSTQQMHHIYLNYLLQFFDDPPAPFEAIRPVDIRKYLD 121

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVA-INPCLSVERPKRKTEGIRPWTKEDMQQFK 183
            R     SA + ++    ++ WA  +      NPC  + R K     +      D   ++
Sbjct: 122 WRPFKV-SANREISVFSHIWNWARSKGITDLANPCAGIRRNKESGRDVYI----DDATYR 176

Query: 184 SFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
           + +    Q  R A +    +G R SD      +H+ N    I   KTG  + + +     
Sbjct: 177 AVYQAADQTLRDAMDLAYLTGQRVSDVLSMDERHIVNGALEICQAKTGAKLAIAITGELA 236

Query: 243 KLLAMTPIGKE-------TFFINNDKQKMNATQFSIWFKAKATKAGVNKSA---HGVRKF 292
            L+      K           ++     +        FK     AG+ K A     +R  
Sbjct: 237 VLIKRIFDHKRGLKLRSTRLIVDEKGFGLGCMALRYRFKKARAAAGIAKQAFQFRDLRAK 296

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKG 325
           +AT  AD      +  A  G  +V   E Y + 
Sbjct: 297 AATDKADLAGDIRQAQAQLGHTSVVMTEHYVRK 329


>gi|324009915|gb|EGB79134.1| phage integrase, SAM-like domain protein [Escherichia coli MS 57-2]
          Length = 357

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 61/341 (17%), Positives = 110/341 (32%), Gaps = 23/341 (6%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMS---ALTGSTPKREYINS 63
           LPP +     R+     Y     G+   L          A  +    L+ S  K      
Sbjct: 12  LPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELLSDSGRKSLIDRI 68

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
                 TL   +  Y +      +   + + + S    I RK  D     I+TK + + +
Sbjct: 69  KGGDAITLHVWLDRYERILTERGIRPKTLLDYASKIRAIRRKLPDKPLTDISTKEVAAML 128

Query: 124 ESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
            +   +   +SA    +++  +F+ A+ + +VA NP  +    K +    R    E +  
Sbjct: 129 NTYVAEGKAASAKLIRSTLVDVFREAIAEGHVATNPVTATRTAKSEVRRSRLTANEYVAI 188

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241
           + +        RLA +  + +G R  D CR     + +N   I+  KTG  + + L    
Sbjct: 189 YHAAEPLPIWLRLAMDLAVVTGQRVGDLCRMKWSDINDNHLHIEQSKTGAKLAIPLTLTI 248

Query: 242 MKL---------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NKSAH 287
             L               G ET   +     ++    S +F      +G+       + H
Sbjct: 249 DALNISLADTLQKCREASGSETIIASKHHDPLSPKTVSKYFTKARNASGLSFDGDPPTFH 308

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
            +R   +                 G K+   A  Y     R
Sbjct: 309 ELR-SLSARLYRNQIGDKFAQRLLGHKSYSMAARYRDSRGR 348


>gi|138559|sp|P27078|VINT_BP434 RecName: Full=Integrase
 gi|215353|gb|AAA67900.1| integrase [Phage 434]
          Length = 356

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 62/343 (18%), Positives = 115/343 (33%), Gaps = 25/343 (7%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHE---STFIPAYMSALTGSTPKREYINS 63
           LPP +     R+     Y     G+   L        +  I A +   +G   K      
Sbjct: 12  LPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLTARI 68

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
                 TL   +  Y K      +   + I++ S    I R   D     ITTK I + +
Sbjct: 69  NSDNSVTLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAML 128

Query: 124 ESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
                    +SA    +++   F+ A+ + ++  NP  +    K +    R    E ++ 
Sbjct: 129 SGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEYLKI 188

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE----- 236
           +++  S     RLA E  + +G R  D C      + +    ++  KTG  I +      
Sbjct: 189 YQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTTLHV 248

Query: 237 ----LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NKSAH 287
               +            +G ET   +  ++ +++   S +F      +G+       + H
Sbjct: 249 DALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPPTFH 308

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
            +R   +    +   +        G K+   A  Y    DR R
Sbjct: 309 ELR-SLSARLYEKQISDKFAQHLLGHKSDTMASQY--RDDRGR 348


>gi|269123216|ref|YP_003305793.1| integrase family protein [Streptobacillus moniliformis DSM 12112]
 gi|268314542|gb|ACZ00916.1| integrase family protein [Streptobacillus moniliformis DSM 12112]
          Length = 299

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 48/255 (18%), Positives = 93/255 (36%), Gaps = 20/255 (7%)

Query: 90  NSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----SRKHTPSSAIQFLTSMRVLFK 145
           + +   E + + +    G  D+ K+     RS +       +    S  + L+++R  FK
Sbjct: 25  SYKKDLEQFIEYLKNNEGIEDFNKVEIFTFRSFIAYLNVELQVNKRSINRKLSAIRTFFK 84

Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLAFEFLLY 201
           + +  +Y+  N  + +  PK +       TKED+ + +S        G + R   E L  
Sbjct: 85  YLLENDYIIENKAVYISTPKFEKPLPNFLTKEDIDKLRSVIKLEKITGLRDRAIIELLYS 144

Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-ELPDGFMKLLAMTPIGK-------- 252
           SGLR  +        +      ++    G    +    +   K ++     K        
Sbjct: 145 SGLRSMELLDLTEYTIDLKNMEVRVIGKGNKERISFFSNNAQKYISEYIERKKEEYKNYN 204

Query: 253 -ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMA 309
            +  F+N D  K+++          + KAG+NK  + H  R   AT   + G     +  
Sbjct: 205 KDAIFVNKDGNKLDSRSLRRLITKYSIKAGINKEVTPHIFRHSFATELLNQGVDIRFVQE 264

Query: 310 TYGWKTVDQAETYTK 324
             G  ++   + YT 
Sbjct: 265 LLGHSSIATTQFYTH 279


>gi|328952276|ref|YP_004369610.1| integrase family protein [Desulfobacca acetoxidans DSM 11109]
 gi|328452600|gb|AEB08429.1| integrase family protein [Desulfobacca acetoxidans DSM 11109]
          Length = 362

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 59/331 (17%), Positives = 111/331 (33%), Gaps = 27/331 (8%)

Query: 19  GKIIY---YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75
           G+I +   Y  +   RR R+  P+++     Y    +     R     P  K TT K L 
Sbjct: 33  GRIWWIEYYDHERRLRRERI-GPNKAAAEQRYREVRSLLAEGRFVRKCPDAK-TTFKTLA 90

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--------- 126
             Y       +    SR   E    +++   GD   + IT   +    + R         
Sbjct: 91  DWYLNLPEVKAKRSYSRD--ERSLKKLLPVFGDKLLKDITPAMVEKYRQDRLSELSYRGN 148

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
              P++  + +  ++++F  A+  E     P   ++  K      R  ++ +     +  
Sbjct: 149 PTKPATVNREMALLKIIFNKAIANEKAEKTPVKGLKMLKENNARDRVLSEAEYLNLINQC 208

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ--KTGTIITVELPDGFM 242
               +P    +   ++G+R  +        +       +++ +  KT     + L    M
Sbjct: 209 PGYLRP--IVKVAYHTGMRQGEILSLTWGQIDLKEGFITLRPEDTKTNEARLIPLNSELM 266

Query: 243 KLLAMTPIGKETF-FINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADA 300
            L    P G         +   +        F++   KA + + + H +R    T    A
Sbjct: 267 DLFKGIPRGLPQLRVFLKNGNPIT--SIRESFQSACRKANITDFTFHDLRHTFTTNMRRA 324

Query: 301 GATAHELMATYGWKTVDQAETY-TKGADRIR 330
           G     +MA  G KT      Y T G D +R
Sbjct: 325 GIHDSVIMAITGHKTTAMFLRYNTVGRDELR 355


>gi|189184607|ref|YP_001938392.1| putative integrase [Orientia tsutsugamushi str. Ikeda]
 gi|189181378|dbj|BAG41158.1| putative integrase [Orientia tsutsugamushi str. Ikeda]
          Length = 399

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 48/202 (23%), Positives = 87/202 (43%), Gaps = 10/202 (4%)

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           ++A QFL ++  +F  A++ E +  NP L +++ K +    R  + ++M +F       +
Sbjct: 175 ATANQFLITLSSIFNKAIKWELIDRNPTLKIDKHKMQARERR-LSYDEMSKFLHVLCGEA 233

Query: 191 QP--RLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLA 246
            P  R      LY+G R ++       ++     I+ I   K G    + L D  +++L 
Sbjct: 234 TPLIRDFALLALYTGARKTNVLEMEWDNIDFARKIWHIPKTKNGKAQNIPLTDEIIEILQ 293

Query: 247 MTP-IGKETFFINNDKQKMN--ATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGA 302
                 K  + ++ DK K       +  W+K    KAG+ N   H +R+  A+  AD GA
Sbjct: 294 ARKLTSKSKWVLSTDKSKSGHLEYPYRGWYK-ICKKAGIKNLRIHDLRRTFASCMADEGA 352

Query: 303 TAHELMATYGWKTVDQAETYTK 324
             + + A      +     YTK
Sbjct: 353 GQYIISAALNHSDIKSTSIYTK 374


>gi|227536514|ref|ZP_03966563.1| integrase/recombinase XerD [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227243591|gb|EEI93606.1| integrase/recombinase XerD [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 297

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 46/269 (17%), Positives = 98/269 (36%), Gaps = 27/269 (10%)

Query: 83  HWGSLAVN-SRISFESYFDQIIR-----KSGDFDYRKITTKHIRS---GVESRKHTPSSA 133
            +  L    +  S E+Y + I +            ++++  +I+     + +   +P S 
Sbjct: 12  RYLQLERGLTSNSIEAYLNDIAKLEVYCTDQQLTLKQLSVHNIQEFLVWINTFDISPYSQ 71

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----G 189
            + ++ ++  F +   +  +  NP   ++ P+   +       E++ Q           G
Sbjct: 72  SRLISGLKAFFGYLQLEGLITKNPVELIQSPRLSRKIPVVLNIEEIDQLIGALDLSTADG 131

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFMKLLAM- 247
            + +   E L   GLR S+     + +L  +I  IK +  G     + +    +K L + 
Sbjct: 132 MRNKAILEILYGCGLRVSELVNLRISNLFLHIDFIKVEGKGNKERLIPIGQHAIKYLNIY 191

Query: 248 -------TPIGK---ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSAT 295
                   P+     +  F+N     ++     +  K  A K G+ K  S H  R   A+
Sbjct: 192 LNEIRVHQPVKAGFEDYVFLNKRGTSLSRVMIFLIIKDLAAKTGLQKEISPHTFRHSFAS 251

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTK 324
              + GA    +    G +++   E YT 
Sbjct: 252 HLVEGGADLRAVQDMLGHESITTTEIYTH 280


>gi|323967241|gb|EGB62665.1| bacteriophage lambda integrase domain-containing protein
           [Escherichia coli M863]
          Length = 357

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 60/341 (17%), Positives = 111/341 (32%), Gaps = 23/341 (6%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHE---STFIPAYMSALTGSTPKREYINS 63
           LPP +     R+     Y     G+   L        S  I A +  L+ +  +      
Sbjct: 12  LPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAVSEAIQANIELLSENRRESLIDRI 68

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
                 TL   +  Y        +   + + + S    I RK  D     I+TK + + +
Sbjct: 69  KGADVITLHVWLDRYETILSERGIRPKTLLDYASKIRAIRRKLPDKPLADISTKEVATML 128

Query: 124 ESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
            +   +   +SA    +++  +F+ A+ + +VA NP  +    K +    R    E ++ 
Sbjct: 129 NTYVAEGKAASAKLIRSTLVDVFREAIAEGHVATNPVTATRTAKSEVRRSRLTANEYVEI 188

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241
           + +        RLA +  + +G R  D CR     + +N   I+  KTG  + + L    
Sbjct: 189 YHAAEPLPIWLRLAMDLAVVTGQRVGDLCRMKWSDINDNHLHIEQSKTGAKLAIPLTLTI 248

Query: 242 MKL---------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NKSAH 287
             L                 ET   +     ++    S +F      +G+       + H
Sbjct: 249 DALNISLADTLQKCREASSSETIIASKHHDPLSPKTVSKYFTKARNASGLSFDGDPPTFH 308

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
            +R   +                 G K+   A  Y     R
Sbjct: 309 ELR-SLSARLYRNQIGDKFAQRLLGHKSDSMAARYRDSRGR 348


>gi|315607201|ref|ZP_07882205.1| integrase [Prevotella buccae ATCC 33574]
 gi|315251255|gb|EFU31240.1| integrase [Prevotella buccae ATCC 33574]
          Length = 407

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 55/373 (14%), Positives = 125/373 (33%), Gaps = 52/373 (13%)

Query: 16  TRHGKIIYYFRKG--HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
             +G  + Y         ++ + +      +  Y+ A   +  +R+      +    ++ 
Sbjct: 41  DDNGNPVLYETGKMVGKPKVHIKHNRRKENLQLYLIAKPRTPAERQQNKETLELAAKIRA 100

Query: 74  LISE--------YR----KSAHWGSLAVN-----SRISFE-------SYFDQIIRKSGDF 109
              +        YR    ++ ++           ++            + D +  +   +
Sbjct: 101 EREQQFKESMLGYRLKKDRNINFLDYYQAYIDSYTKKDLRMIKIALNRFKDFLKEQYPLY 160

Query: 110 DYR---KITTKHIRSGVESRKHTPS---SAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163
           ++     + TK +         + S    A       + + ++A+  E +  +PC  V  
Sbjct: 161 EFSIKPDLITKDMMEYFVEYLQSRSVGEGAKSIYQRFKKVVRYAIDHEVMLKDPCKGV-V 219

Query: 164 PKRKTEGIR--PWTKEDMQQFKSFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQ- 218
            K   + +R    + +++Q       +   P  R AF   LY GLR  D      +++  
Sbjct: 220 CKVDEQILRKDVLSMDEIQSLIQCHYDNENPNVRRAFILCLYCGLRFCDVKDLTYKNIDY 279

Query: 219 -NNIFSIKTQKTG-----TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW 272
            N++   +  KT      + + + L +G + L+   P   ++   N      +       
Sbjct: 280 TNHLLKFEQNKTKGHSANSGVVIPLNNGLLSLIGEAPDDLDSSIFNLP----SYESCCKS 335

Query: 273 FKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
            K    +AG+NK  S H  R   A    + GA    + +  G   +   E YT+  D  +
Sbjct: 336 VKRWVKRAGINKHISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVD--K 393

Query: 331 LGIKNSRRISSVV 343
           L  +    +  + 
Sbjct: 394 LKEEAINSLPELK 406


>gi|222094274|ref|YP_002528333.1| site-specific integrase/recombinase [Bacillus cereus Q1]
 gi|229042377|ref|ZP_04190125.1| Integrase/recombinase [Bacillus cereus AH676]
 gi|221238331|gb|ACM11041.1| site-specific integrase/recombinase [Bacillus cereus Q1]
 gi|228726924|gb|EEL78133.1| Integrase/recombinase [Bacillus cereus AH676]
          Length = 330

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 45/280 (16%), Positives = 103/280 (36%), Gaps = 26/280 (9%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISF----ESYFDQIIRKSGDFDYRK---ITTKHIRS- 121
           T    I+ + K     +L   +   +    +++ + +  +  D    K   +T +H++  
Sbjct: 26  TFNEAITLFVKDCELRNLRPFTIKYYLNELQAFLNLLTEQEIDVSILKPYNMTEEHVKEN 85

Query: 122 ----GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
                   R     S    L ++R  + +  +Q+++  NP  +++  K +   I  ++KE
Sbjct: 86  VILYMKNYRGIKVVSINTRLRALRAFYNFLYKQKHIPRNPMENIKLLKDRKRIIPTFSKE 145

Query: 178 DMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGT 231
            + +     +     G +       +L +G+R ++     V+ ++  +++  I+  K+  
Sbjct: 146 QLNKLFHQPNLRTFTGVRDYTIMMLMLETGIRINELVGLSVKDIRWEDSLLVIRNAKSYR 205

Query: 232 IITVEL----PDGFMKLLAMTP-IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--- 283
              V +         K +A+   +     F+  D  ++               A +    
Sbjct: 206 ERQVPIQKDMKSQLKKYIAIRGYVESNALFVTVDGTRLTRRGIQQRISIYGNMAQIKDVR 265

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
            S H  R   A +S   GA   EL A  G   ++  +TY 
Sbjct: 266 CSPHTFRHTFAKLSVQQGANIFELQAILGHTNMEIVKTYV 305


>gi|90407171|ref|ZP_01215359.1| tyrosine recombinase [Psychromonas sp. CNPT3]
 gi|90311747|gb|EAS39844.1| tyrosine recombinase [Psychromonas sp. CNPT3]
          Length = 298

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 45/284 (15%), Positives = 98/284 (34%), Gaps = 29/284 (10%)

Query: 75  ISEYRKSAHW--GSLAVNSRISFE-------SYFDQIIRKSGDFDYRKITTKHIRSGVES 125
           I ++  S  W    L+ N+  S+        ++ +   +   +  Y+ +           
Sbjct: 6   IDQFLDSL-WLERGLSQNTLASYRFDLCLVQNFLEANNKVLAEASYQDLCDYFSFRLYSD 64

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
             +  SS  + ++++R  +++  R++    +P   ++ PK      +  ++ ++    S 
Sbjct: 65  IAYKNSSTARLMSALRRYYQFLCREKLRDDDPSAKLQSPKTLKPLPKSLSESEVDGLLSA 124

Query: 186 WSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-VELPDG 240
                    + +   E L  +GLR S+     +Q L      ++    G     V L + 
Sbjct: 125 PDLSDSVQFRDKAMLELLYATGLRVSELVGLQMQELNLQQGVVRVTGKGEKTRLVPLGEE 184

Query: 241 FMKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAH 287
               +                 +  F +    +M    F    K  A +  ++K   S H
Sbjct: 185 ANYWVDRYIEEVRPELLKGRSCDILFPSRRGSQMVRQTFWHRIKYYALRCNIDKTLISPH 244

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIR 330
            +R   AT   + GA    +    G   +   + YT  A DR++
Sbjct: 245 VLRHAFATHLLNYGADLRVVQMLLGHSDLSSTQIYTHIAQDRLK 288


>gi|296122593|ref|YP_003630371.1| tyrosine recombinase XerC [Planctomyces limnophilus DSM 3776]
 gi|296014933|gb|ADG68172.1| tyrosine recombinase XerC [Planctomyces limnophilus DSM 3776]
          Length = 302

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 43/271 (15%), Positives = 90/271 (33%), Gaps = 26/271 (9%)

Query: 85  GSLAVNSRISFESYF----DQIIRKSGDF----DYRKITTKHIRSGVESRKHTPSSAIQF 136
            + +  +  S+   F    D +  + G             +   + +    +  ++  + 
Sbjct: 16  RNASELTLKSYAEDFGSLHDYLTERVGHITEPGQLGISELRGYVAYLNECGYAKTTIARR 75

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQP 192
           L S+R  F++  R++ V  NP  ++  P+   +  +  T E + +           G + 
Sbjct: 76  LASLRSFFRFCQREQLVEGNPAKALRTPRVGRKLPKFLTTEQIVKLLEAPPANEVDGLRD 135

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-ELPDGFMKLL------ 245
           R   E    +GLR ++     +     +   +     G    +  L     K L      
Sbjct: 136 RAILETFYSAGLRVAELVGLNLDDWDQDAQILHVFGKGKKERIAPLGKHATKALEKWVAV 195

Query: 246 -----AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISA 298
                A  P  K   F+N    ++         +      G+++  S H +R   AT   
Sbjct: 196 RKPEEAAPPQLKNALFLNRFGTRLTTRSVGRMLEKYIQLTGLDQLISPHTLRHTFATHLL 255

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRI 329
           D GA    +    G K++   + YT  + + 
Sbjct: 256 DGGADLRSVQEMLGHKSLTTTQIYTHVSTQR 286


>gi|161869695|ref|YP_001598862.1| integrase/recombinase [Neisseria meningitidis 053442]
 gi|161595248|gb|ABX72908.1| integrase/recombinase [Neisseria meningitidis 053442]
          Length = 291

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 46/280 (16%), Positives = 96/280 (34%), Gaps = 21/280 (7%)

Query: 74  LISEYRKSAHWGS--LAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRKHT 129
           LI    ++  W    L  N+   +    ++I R+        +      + + V      
Sbjct: 5   LIDRLLETL-WLDRRLNQNTLNGYRRDLEKIARRLSQSGRTLKDADEADLAAAVYVDGEQ 63

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---- 185
            SS  + L++ + L+ W  R+     NP   ++ PK         T++ + +  +     
Sbjct: 64  RSSQARALSACKRLYIWMEREGIRTDNPTRLLKPPKIDKNIPTLITEQQISRLLATPDTD 123

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG---- 240
              G + +   E +  +GLR S++      ++  +   I    K      V +       
Sbjct: 124 TPHGLRDKALLELMYATGLRVSEAVGLNFGNVDLDRGCITALGKGDKQRMVPMGQESAYW 183

Query: 241 ------FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFS 293
                   + L +     +  F++  K  ++     +  K  A +AG+   S H +R   
Sbjct: 184 VERYYTEARPLLLKGRNCDALFVSQKKTGISRQLAWMIVKEYAGRAGIGHISPHSLRHAF 243

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           AT     G     +    G   ++  + YT  A+    G+
Sbjct: 244 ATHLVQHGLDLRVVQDMLGHADLNTTQIYTHVANVWLQGV 283


>gi|153805890|ref|ZP_01958558.1| hypothetical protein BACCAC_00130 [Bacteroides caccae ATCC 43185]
 gi|149130567|gb|EDM21773.1| hypothetical protein BACCAC_00130 [Bacteroides caccae ATCC 43185]
          Length = 267

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 84/224 (37%), Gaps = 20/224 (8%)

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR--PWTKEDMQQFKSFWSEGS 190
           A       + + ++A+  + +  +P  SV   K  ++ +R    + E++Q+  +   +  
Sbjct: 50  AKSIYQRFKKVIRYAIDHDVMLKDPSKSVT-CKVDSQMLRKDVLSPEEIQKLAACHYDNE 108

Query: 191 QP--RLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTG-----TIITVELPDGF 241
            P  R AF F LY GL   D      +++   N +   +  KT      + + + L D  
Sbjct: 109 NPNVRRAFIFCLYCGLCFCDVKDLTYKNVDYANRLLKFEQSKTKGYSASSGVVIPLNDSL 168

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
           + ++   P+ K     +               K    +AG++K  S H  R   A    +
Sbjct: 169 LSIIGEAPVDKNCLIFDLP----TYESCCKSVKRWVKRAGIDKHISWHCARHSFAVNILN 224

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343
            GA    + +  G   +   E YT+  D  +L  +    +  + 
Sbjct: 225 NGANIKTVASLLGHSGLKHTEKYTRAVD--KLKEEAINSLPELK 266


>gi|254467807|ref|ZP_05081213.1| tyrosine recombinase XerC [beta proteobacterium KB13]
 gi|207086617|gb|EDZ63900.1| tyrosine recombinase XerC [beta proteobacterium KB13]
          Length = 295

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 43/270 (15%), Positives = 100/270 (37%), Gaps = 20/270 (7%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR---SGVESRKHT 129
           L+ ++     +   L+  +  ++++  +++I    D    +  ++ IR   S + +   +
Sbjct: 5   LLDQFLNYIKFEKRLSELTIKNYQNDINRLI-LINDKKLTEFNSEDIRLSLSKLHASGLS 63

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-- 187
             S  + L+S R  F +  + + +  +P   ++ PK + +  +  + + +    +     
Sbjct: 64  GKSLSRILSSWRSCFLFFNKSQLMKYDPTSGIKAPKSQKKLPQTLSIDQVFNLINIPQTN 123

Query: 188 -EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-ELPDGFMKLL 245
              ++ R   EF   SGLR S+     +  +  N  ++K    G    +  L    ++ L
Sbjct: 124 FIDTRDRAILEFFYSSGLRLSELVNIHLSDIDTNEQTLKVLGKGNKFRIVPLGRKAIEAL 183

Query: 246 AMTP---------IGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294
            +           +  E  F+N   +K+ A       K  A K  +  N   H +R   A
Sbjct: 184 DLWILQRNKLNKLVDDEFLFLNQQGKKLTARAIQYRLKFWAQKNNIPENIHPHLLRHSFA 243

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324
           +    +      +    G   +   + YT 
Sbjct: 244 SHVLQSSQDLRAVQELLGHSNISTTQIYTH 273


>gi|293607049|ref|ZP_06689392.1| integrase/recombinase [Achromobacter piechaudii ATCC 43553]
 gi|292814539|gb|EFF73677.1| integrase/recombinase [Achromobacter piechaudii ATCC 43553]
          Length = 332

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 51/328 (15%), Positives = 98/328 (29%), Gaps = 51/328 (15%)

Query: 56  PKREYINSPRKKPTTLKWLISE-YRKSAHWGSLAVNSRISFESYF--------------D 100
           P       P      +   I   + +      L+ N+  ++                   
Sbjct: 4   PPMSTTRPPLTSQADIDAFIDAVWLEDG----LSANTLAAYRRDLTGFARWLEDPQAYAR 59

Query: 101 QIIRKSGD------------FDYRKITTKHIRSGVESRKH--TPSSAIQFLTSMRVLFKW 146
           ++  + GD                      I +    R      ++A + L ++R  F W
Sbjct: 60  EMADRHGDAAGEHALPVGPAKPLCDAQKADIEAWFAFRHEETRATTANRRLAALRRFFAW 119

Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK----SFWSEGSQPRLAFEFLLYS 202
           A+R+     +PCL++   K+     +  +++ +        +    G + R   E L  +
Sbjct: 120 ALREHRSQRDPCLTLVAAKQPPRLPKTLSEQQVDALLRAPDATQPRGLRDRAMLETLYAT 179

Query: 203 GLRCSDSCRAGVQHLQNNIFSIKT--QKTGTIITVELPDGFMKLLA----------MTPI 250
           GLR S+        +  N   ++    K G    V L       +               
Sbjct: 180 GLRVSELVGVRALDVSLNEGVVRVVLGKGGKDRLVPLGAEAAHWIDLYSKTARPELAAGR 239

Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELM 308
             +  FI    + M+   F    K  A  A ++   S H +R   AT   + GA    + 
Sbjct: 240 QSDALFITGRAEAMSRQAFWQLVKKYALLADIHAPLSPHVLRHAFATHLLNHGADLRVVQ 299

Query: 309 ATYGWKTVDQAETYTKGADRIRLGIKNS 336
              G   +   + YT  A      +  +
Sbjct: 300 MLLGHADISTTQIYTHVARERLKALHAA 327


>gi|328952607|ref|YP_004369941.1| integrase family protein [Desulfobacca acetoxidans DSM 11109]
 gi|328452931|gb|AEB08760.1| integrase family protein [Desulfobacca acetoxidans DSM 11109]
          Length = 281

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 37/269 (13%), Positives = 88/269 (32%), Gaps = 27/269 (10%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP- 130
              +  YR+   + +         +     +    G     +IT   +     +RK TP 
Sbjct: 3   DHYLEIYRQQKSFHNFK-------KQIVQTLTEAFGSTRLSQITYLDLEKHRNTRKATPT 55

Query: 131 --------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP--KRKTEGIRPWTKEDMQ 180
                   +   + +  ++ +   AV    +   P    ++   K     +R  ++ +++
Sbjct: 56  WRGETRSDARVNREMAVLKHMLNKAVEWGMLEGTPFKKGQKLMFKENNHSLRFLSEAEIE 115

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
              +      +P    E  L +G+R  +      + + + +  +   K+G    + +   
Sbjct: 116 ALLAVCPPHLRP--IVETALLTGMRKEELLSLKWEQINHGLIHLIRTKSGNPRHIPISGR 173

Query: 241 FMK----LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSAT 295
            ++    L     +     F + + ++ N+ + S  F     KAG+ N   H +R   A+
Sbjct: 174 LVEIFQQLRHQNQLKSPYVFCDGEGRRFNSVKRS--FATACRKAGIENFRFHDLRHTFAS 231

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTK 324
                GA    +    G   +     Y  
Sbjct: 232 HLIMRGAGLKTVQELLGHSDIKMNMRYAH 260


>gi|315092744|gb|EFT64720.1| tyrosine recombinase XerD [Propionibacterium acnes HL060PA1]
          Length = 306

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 44/284 (15%), Positives = 95/284 (33%), Gaps = 30/284 (10%)

Query: 70  TLKWLISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDF------DYRKITTKHIRSG 122
           ++   + +Y +       L+ N+  ++     +     G        +  ++  +  R  
Sbjct: 4   SVGGQVEDYLRHLVVERGLSDNTVQAYRRDLLRYQEYLGSRGIGSLAEVTRVDVEEFRRH 63

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           ++     P+S  + + ++R L ++AV    V  +    +    R     +  T + ++  
Sbjct: 64  LDHIGLAPASVTRCVVAVRNLHRFAVGSGQVQADVTAGMSPGTRSRRLPKALTMDQVESL 123

Query: 183 KSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-----NIFSIKTQKTGTII 233
            +       EG +     E L  +G R S+ C   V  ++      ++      K     
Sbjct: 124 LAAPDTSTVEGLRDVALLELLYGTGARVSEVCALDVDDIRRVLDDPDLGLRLIGKGDKER 183

Query: 234 TVELPDGFMKLLAMTPI-----------GKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
            V L     K +    I           G+    +N   ++++        +     AG+
Sbjct: 184 IVPLGSYAAKAVDAWLIRGRPAWAEIGNGEHALLLNTRGRRLSRQSAWAVIRRAGEAAGL 243

Query: 283 N---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           +    S H +R   AT   D GA    +    G  +V   + YT
Sbjct: 244 DVEHLSPHSLRHSYATHLLDGGADVRVVQELLGHSSVTTTQIYT 287


>gi|163741192|ref|ZP_02148584.1| tyrosine recombinase XerD [Phaeobacter gallaeciensis 2.10]
 gi|161385545|gb|EDQ09922.1| tyrosine recombinase XerD [Phaeobacter gallaeciensis 2.10]
          Length = 337

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 49/308 (15%), Positives = 104/308 (33%), Gaps = 34/308 (11%)

Query: 59  EYINSPRKKPTT-LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKIT 115
                P   P   L+W+ +     A     A N+ +++      +    G    D+   +
Sbjct: 3   PPSAQPANAPQDDLQWIATFLDAQAADLGAARNTLLAYGRDLKDVASWLGHKNLDFGSAS 62

Query: 116 TKHIRSGV---ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
              I + +   ++     ++  + L++++ ++++A  + + + NP + ++ P R+    +
Sbjct: 63  RDDIEAYLIACDAEGLARATRARRLSAIKQIYRFAFDEGWRSDNPAIQIKGPGRQKALPK 122

Query: 173 PWTKEDMQQFKSFW-------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSI 224
                ++ +            S+  +     E L  +G+R S+     V   + +    +
Sbjct: 123 TLEVIEVDRLLDAARQSGRNLSDRLRNTCMMELLYATGMRVSELVGLPVAAARGDPRMLL 182

Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKET--------------FFINNDKQ--KMNATQ 268
              K G    V L       LA     ++               F   +  +   +   +
Sbjct: 183 VLGKGGKERMVPLSPPARDALAAWLTTRDAAEEAAVAKGAAPSRFLFPSRGKSGHLTRHR 242

Query: 269 FSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           F +  K  A   G+     S H +R   AT     GA    + A  G   +   E YT  
Sbjct: 243 FYLLIKEFAVAGGLPPEAVSPHTLRHAFATHLLTNGADLRAIQALLGHADIATTEIYTHV 302

Query: 326 ADRIRLGI 333
            D  RL  
Sbjct: 303 LD-ARLSE 309


>gi|225021521|ref|ZP_03710713.1| hypothetical protein CORMATOL_01542 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224945903|gb|EEG27112.1| hypothetical protein CORMATOL_01542 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 305

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 55/296 (18%), Positives = 101/296 (34%), Gaps = 34/296 (11%)

Query: 71  LKWLISEYRKSAH-WGSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGV-ES 125
           L  +++ +          + N+  ++     +    +   G  D  ++TT  + + V E 
Sbjct: 2   LDDVVAAWLTHLKVEKGYSSNTLSNYRRDLYRYVTWLHAVGVTDLNQVTTSQVEAYVTEL 61

Query: 126 RKHTP---------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
           R+  P         SSA + L   R L K+A+ +  V  +    V  P          T 
Sbjct: 62  RRGDPDRNIKPLAVSSAARALIVARGLHKFALLEGLVTTDVAADVSPPATGRHLPDVLTI 121

Query: 177 EDMQQF-------KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQK 228
            ++ Q         +      + R   E L  +G R S+     V +  +N   ++ T K
Sbjct: 122 AEITQLIDAIPTDDTASPIDLRDRALIELLYGTGARISEITALTVDNFHDNDGMLRITGK 181

Query: 229 TGTIITVELPDGFMK-----LLAMTPI----GKETFFINNDKQKMNATQFSIWFKAKATK 279
                 V +    M      L+   P+          +N   + ++        K  A +
Sbjct: 182 GNKQRLVPVGSQAMAAVDQYLVRARPVFATGASHALLLNTRGRTLSRQSAWAVLKTAAAR 241

Query: 280 AGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLG 332
           A + K  S H +R   AT   + GA    +    G  +V   + YT   A+ +R  
Sbjct: 242 AHITKDISPHTLRHSFATHLLEGGAGERVVQELLGHSSVTTTQIYTHVSAENLRQA 297


>gi|325917722|ref|ZP_08179910.1| tyrosine recombinase XerD subunit [Xanthomonas vesicatoria ATCC
           35937]
 gi|325536051|gb|EGD07859.1| tyrosine recombinase XerD subunit [Xanthomonas vesicatoria ATCC
           35937]
          Length = 337

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 45/273 (16%), Positives = 90/273 (32%), Gaps = 29/273 (10%)

Query: 85  GSLAVNSRISFESYFDQIIR-----KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
             +A  +  S+    + + R       G     +             +++P S  + L++
Sbjct: 52  QGVARQTLDSYRRDLEGLARWRDGAGGGLLGIDRSVLFDYLRWRTEARYSPRSNARLLST 111

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195
           +R  +   +R    + +P   ++ P+      +  T+  +    +        G + R  
Sbjct: 112 LRAFYGLCLRDGVRSDDPTALLDPPRLPRSLPKALTETQIDALLAAPDIQTPLGLRDRAM 171

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVEL---------------PD 239
            E +  +GLR S+        +      ++ T K      V L                 
Sbjct: 172 LELMYAAGLRVSELVNLPAVGVNLRQGVLRVTGKGSKERLVPLGEESQHWLERYLHEARP 231

Query: 240 GFMKLLAMTPIGKET-FFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSAT 295
                 A+  +  +   FI+  +Q  +   F    K  A  AG++    S HG+R   AT
Sbjct: 232 LLADHKAVAAVDGQVPLFIDAARQPPSRQHFWALVKRYAAVAGIDPATVSPHGLRHSFAT 291

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADR 328
              + GA    L    G  ++   + YT  A +
Sbjct: 292 HLLNHGADLRALQMLLGHSSLSTTQIYTLVARQ 324


>gi|170020889|ref|YP_001725843.1| lambda integrase [Escherichia coli ATCC 8739]
 gi|169755817|gb|ACA78516.1| lambda integrase [Escherichia coli ATCC 8739]
          Length = 356

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 62/343 (18%), Positives = 115/343 (33%), Gaps = 25/343 (7%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHE---STFIPAYMSALTGSTPKREYINS 63
           LPP +     R+     Y     G+   L        +  I A +   +G   K      
Sbjct: 12  LPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLTARI 68

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
                 TL   +  Y K      +   + I++ S    I R   D     ITTK I + +
Sbjct: 69  NSDNSVTLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAML 128

Query: 124 ESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
                    +SA    +++   F+ A+ + ++  NP  +    K +    R    E ++ 
Sbjct: 129 NGYIDEGKAASAKLIRSTLSDAFREAMAEGHITTNPVAATRAAKSEVRRSRLTADEYLKI 188

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE----- 236
           +++  S     RLA E  + +G R  D C      + +    ++  KTG  I +      
Sbjct: 189 YQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTTLHV 248

Query: 237 ----LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NKSAH 287
               +            +G ET   +  ++ +++   S +F      +G+       + H
Sbjct: 249 DALGISMKETLDKCKKILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPPTFH 308

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
            +R   +    +   +        G K+   A  Y    DR R
Sbjct: 309 ELR-SLSARLYEKQISDKFAQHLLGHKSDTMASQY--RDDRGR 348


>gi|117625125|ref|YP_854113.1| site-specific tyrosine recombinase XerD [Escherichia coli APEC O1]
 gi|115514249|gb|ABJ02324.1| site-specific tyrosine recombinase XerD [Escherichia coli APEC O1]
          Length = 264

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 40/238 (16%), Positives = 86/238 (36%), Gaps = 19/238 (7%)

Query: 112 RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
           +    + + +      +  +S+ + L+++R LF++  R+++   +P   +  PK      
Sbjct: 17  QSDDLQALLAERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLP 76

Query: 172 RPWTKEDMQQFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT- 226
           +  ++  +++             + +   E L  +GLR S+     +  +      ++  
Sbjct: 77  KDLSEAQVERLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVI 136

Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFIN----------NDKQKMNATQFSIWFKAK 276
            K      V L +  +  L         + +N             Q+M    F    K  
Sbjct: 137 GKGNKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHY 196

Query: 277 ATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIR 330
           A  AG++    S H +R   AT   + GA    +    G   +   + YT  A +R+R
Sbjct: 197 AVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLR 254


>gi|322806106|emb|CBZ03673.1| tyrosine recombinase XerD [Clostridium botulinum H04402 065]
          Length = 263

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 40/252 (15%), Positives = 97/252 (38%), Gaps = 18/252 (7%)

Query: 99  FDQIIRKSGD--FDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAIN 156
           F + +R  G+       +T       ++      SS ++ + S+R  +K+ +++  V+ +
Sbjct: 4   FSEFVRNRGERILSVDTVTIMAFVQYLQREGRATSSIVRNIVSVRNFYKYLIKKNMVSED 63

Query: 157 PCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLAFEFLLYSGLRCSDSCRAG 213
           P L  E PK +    +  + E++ +  +      +G + +   E +  +G++ ++     
Sbjct: 64  PTLGYEIPKIERTIPKILSVEEVDKLLNSPNSSKKGLRDKAMLELMYATGVKITELLNLN 123

Query: 214 VQHLQNNIFSIKTQKTGTIITVELPDG------FMKLLAMTPIGK----ETFFINNDKQK 263
           +  +      IK + +     + +P G          L + P       +  F+N    +
Sbjct: 124 IYDINLKFNYIKCRGSKKRERI-IPIGSYAIKCLKNYLEVRPAINVYNLDYLFLNLKGTQ 182

Query: 264 MNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
           M    F    K  A +A ++K   ++ +R   A      GA    +    G K +   + 
Sbjct: 183 MTRQGFWKIIKFYAKEASIDKEIDSYTLRHSFAVHLLQNGADIKSVQELLGHKDLAATQI 242

Query: 322 YTKGADRIRLGI 333
           Y+  + + ++  
Sbjct: 243 YSSISKKSKIAE 254


>gi|320637940|gb|EFX07713.1| Phage integrase family protein [Escherichia coli O157:H7 str.
           G5101]
          Length = 356

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 62/343 (18%), Positives = 115/343 (33%), Gaps = 25/343 (7%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHE---STFIPAYMSALTGSTPKREYINS 63
           LPP +     R+     Y     G+   L        +  I A +   +G   K      
Sbjct: 12  LPPNLY---IRNNGYYCYRGPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLTARI 68

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
                 TL   +  Y K      +   + I++ S    I R   D     ITTK I + +
Sbjct: 69  NSDNSVTLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAML 128

Query: 124 ESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
                    +SA    +++   F+ A+ + ++  NP  +    K +    R    E ++ 
Sbjct: 129 NGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEYLKI 188

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE----- 236
           +++  S     RLA E  + +G R  D C      + +    ++  KTG  I +      
Sbjct: 189 YQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTTLHV 248

Query: 237 ----LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NKSAH 287
               +            +G ET   +  ++ +++   S +F      +G+       + H
Sbjct: 249 DALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPPTFH 308

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
            +R   +    +   +        G K+   A  Y    DR R
Sbjct: 309 ELR-SLSARLYEKQISDKFAQHLLGHKSDTMASQY--RDDRGR 348


>gi|220912288|ref|YP_002487597.1| tyrosine recombinase XerD [Arthrobacter chlorophenolicus A6]
 gi|219859166|gb|ACL39508.1| tyrosine recombinase XerD [Arthrobacter chlorophenolicus A6]
          Length = 362

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 56/304 (18%), Positives = 99/304 (32%), Gaps = 37/304 (12%)

Query: 57  KREYINSPRKKPTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS---GDFDYR 112
           K          PT +   +++Y +       LA N+  ++     +  R     G     
Sbjct: 39  KAPEPVQAAAAPTKIDRGVTDYLQHMGVERGLAANTLAAYRRDLARYSRYLAGTGCQQPG 98

Query: 113 KITTKHIRSGVESRKHT--------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP 164
            IT  H+   V +              SA + + ++R L K+   + + A +P   V  P
Sbjct: 99  DITRHHVTGFVRALSDGSDGGTALGVRSAARTVVAVRGLHKFWALEGHTASDPASEVHPP 158

Query: 165 KRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-- 218
                  +  T +++ +         + G + R   EFL  +G R S++    V  +   
Sbjct: 159 MAGKRLPKAITVDEVTRILEAAGTDTATGLRDRALLEFLYSTGARISEAVGLDVDDISLA 218

Query: 219 ------NNIFSIKTQKTGTIITVEL-------PDGF----MKLLAMTPIGKETFFINNDK 261
                          K      V L        + +      LLA    G    F+N   
Sbjct: 219 GDDTEQGPAIVRLFGKGSKERLVPLGSYGARALEAYLVRGRPLLAAKGKGTPALFLNARG 278

Query: 262 QKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
            +++        K  A KA + +  S H +R   AT   + GA    +    G  +V   
Sbjct: 279 GRISRQSAWTILKVAAEKANITRDVSPHTLRHSFATHLLEGGADVRVVQELLGHASVTTT 338

Query: 320 ETYT 323
           + YT
Sbjct: 339 QVYT 342


>gi|270308385|ref|YP_003330443.1| integrase/recombinase [Dehalococcoides sp. VS]
 gi|270154277|gb|ACZ62115.1| integrase/recombinase [Dehalococcoides sp. VS]
          Length = 302

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 43/290 (14%), Positives = 98/290 (33%), Gaps = 28/290 (9%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD-YRKITTKHIRSGVESRKHT 129
           L +L+ E   S +      N      ++ D+   K G    +   T + + + +   K  
Sbjct: 9   LNYLMVEKGFSENTTEAYENDLRQMMTFADKEAAKFGKIPGWENFTRQTMLAYMLDLKER 68

Query: 130 ---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
               ++ ++ + + +  F + V +  +  NP  ++  PK         +   ++   +  
Sbjct: 69  NYAITTVVRKMAAAKSFFNFMVAEGKLKENPTENISTPKVGKPLPDAISISQVRALLNQP 128

Query: 187 -----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240
                SE  + +   E L  SG+R ++     V  +      ++   K      + +   
Sbjct: 129 VKSGSSEAKRDKAMLELLYASGMRVTELVNLNVLDIDLKEGFVRCFGKGRKERMIPIYPQ 188

Query: 241 FMKLLA----------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHG 288
             + +           +    ++  F+N    ++         K  A +AG++   + H 
Sbjct: 189 AAQSIQEYLTEIRPNLVRAETEKALFLNRRGDRLTRQGLWQILKGYAREAGLDDVVTPHT 248

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338
           +R   AT     GA    +    G   +   + YT       L  ++ RR
Sbjct: 249 LRHSFATHMLSGGADLRSVQELLGHANISTTQIYTH------LTSEHIRR 292


>gi|212639574|ref|YP_002316094.1| site-specific tyrosine recombinase XerC [Anoxybacillus flavithermus
           WK1]
 gi|254799325|sp|B7GGC7|XERC_ANOFW RecName: Full=Tyrosine recombinase xerC
 gi|212561054|gb|ACJ34109.1| Site-specific recombinase XerD [Anoxybacillus flavithermus WK1]
          Length = 300

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 43/277 (15%), Positives = 96/277 (34%), Gaps = 27/277 (9%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS------GVESR 126
            L  EY +     + +  +   ++    +          +++              +  R
Sbjct: 9   NLFIEYLQIE--KNYSEYTIACYKHDIGEFFEFMEREQIKQLQQVSYSDVRLFLTELHQR 66

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185
           K +  S  + ++S+R  +K+ +R++ V+ NP      PK++ +       ++++Q     
Sbjct: 67  KQSSRSIARKMSSLRSFYKFLLREKIVSENPFALASLPKKEQKIPHFLYPDELEQLFVVN 126

Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVE----- 236
               + G + +   E L  +G+R S+ C   + H+  ++ +I  + K      V      
Sbjct: 127 DLNTAIGQRNQAMIELLYATGIRVSECCNIRLSHIDFSVCTILISGKGNKQRYVPFGTYA 186

Query: 237 -------LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAH 287
                  + DG  +L +      +  F+N     +              +A +    S H
Sbjct: 187 KEALERYIQDGRQQLASKAKTPTDVLFLNARGGALTPRGVRHILNDIVERAALSLKVSPH 246

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             R   AT   + GA    +    G   +   + YT 
Sbjct: 247 TFRHTFATHLLNEGADLRSVQELLGHAHLSSTQVYTH 283


>gi|160883082|ref|ZP_02064085.1| hypothetical protein BACOVA_01050 [Bacteroides ovatus ATCC 8483]
 gi|156111554|gb|EDO13299.1| hypothetical protein BACOVA_01050 [Bacteroides ovatus ATCC 8483]
          Length = 293

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 51/276 (18%), Positives = 105/276 (38%), Gaps = 24/276 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIR----KSGDFDYRKITTKHIRSGV---ES 125
           LI  +     +  + +  + +++     Q+      + G F+  ++  + IR  +     
Sbjct: 2   LIESFLDYLQYERNYSEKTVLAYGEDIKQLQEFAQEEYGKFNPLEVEAELIREWIVSLMD 61

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           + +T +S  + L+S+R  +K+ +RQ    I+P   ++ PK K        + +M +    
Sbjct: 62  KGYTSTSVNRKLSSLRTFYKYLLRQGETTIDPLRKIKGPKNKKPLPVFLKENEMNRLLDE 121

Query: 186 WS-----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPD 239
                  +G + RL  E    +G+R S+      + +  +   +K T K      +   D
Sbjct: 122 TDFGEGFKGCRDRLIIEVFYATGMRLSELIGLDNKDVDFSASLLKVTGKRNKQRLIPFGD 181

Query: 240 GFMKLL--------AMTPIGKETFFINNDKQKMNATQFSIWFKA-KATKAGVNK-SAHGV 289
              +L+           P   E FFI  + +++         K   +  A + K S H +
Sbjct: 182 ELQELMLEYINVRNETIPERSEAFFIRENGERLYKNLVYNLVKRNLSKVATLKKKSPHVL 241

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           R   AT   +  A    +    G +++   E YT  
Sbjct: 242 RHTFATTMLNNEAELGVVKELLGHESITTTEIYTHA 277


>gi|194336037|ref|YP_002017831.1| tyrosine recombinase XerD [Pelodictyon phaeoclathratiforme BU-1]
 gi|194308514|gb|ACF43214.1| tyrosine recombinase XerD [Pelodictyon phaeoclathratiforme BU-1]
          Length = 304

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 46/265 (17%), Positives = 96/265 (36%), Gaps = 25/265 (9%)

Query: 85  GSLAVNSRISFESYFDQ--IIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTS 139
            + + N+R S+ +   +  I  +        IT +HI   +          SS  + +++
Sbjct: 23  RNFSANTRESYSNDLKRYLIFMQHRSRRLEMITKEHIEEFMGELYDIGLEASSIARNISA 82

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFWSEG---SQP 192
           +R   K+ V +  +  NP  ++ +PK+        T ++    +   +S    G    + 
Sbjct: 83  IRSFHKFLVIERTLNTNPAENIHQPKKAQYLPSVLTVDETMRLLAAPQSVNPPGKYVLRD 142

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELP----------DGF 241
           +   E L  +G+R S+      Q L  +   ++   K      V +              
Sbjct: 143 KAMLELLYATGVRVSELINIRQQSLYLDAGFVRIFGKGSKERLVPVGTSAIGWVTRYQAE 202

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
           +++  +     +  F+N    K++        +  A  AG+ K  S H  R   AT   +
Sbjct: 203 LRIALVQRNSDDYLFLNARGIKLSRMALFTMVQKYAVMAGIEKNISPHTFRHTFATHLLE 262

Query: 300 AGATAHELMATYGWKTVDQAETYTK 324
            GA    +    G +++   + YT 
Sbjct: 263 GGADLRAVQEMLGHRSIVTTQIYTH 287


>gi|149177593|ref|ZP_01856195.1| integrase/recombinase [Planctomyces maris DSM 8797]
 gi|148843573|gb|EDL57934.1| integrase/recombinase [Planctomyces maris DSM 8797]
          Length = 313

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 43/287 (14%), Positives = 98/287 (34%), Gaps = 26/287 (9%)

Query: 71  LKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITT--------KHIRS 121
           L   I  + +      + +  +  S+    + ++    +++   +          +   +
Sbjct: 12  LHDAIDHFLRYLQIERNSSDLTLKSYAEDLESLVEYLTEYEGALLPPDQIGISELRRYVA 71

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM-- 179
            +   ++  ++  + L  +R  F++  R+ Y   NP   +  P+   +     T + +  
Sbjct: 72  YLHECQYEKTTIARRLACLRSFFRYCCREGYSKTNPAKPLRTPRTGRKLPHFLTTDQIGT 131

Query: 180 --QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-E 236
             +   +    G + R   E L  +GLR S+     V     +   I+    G    +  
Sbjct: 132 LLEAPPANQKMGLRDRAILETLYSAGLRVSELVALNVSDWDQDANIIRVLGKGRKERIAP 191

Query: 237 LPDGFMKLL----------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284
           +     K L                 +  F+N  K ++ +       +    + G++K  
Sbjct: 192 IGSFAAKALTHWLEEREAKPGAHPDSDALFLNRLKTRLTSRSVGRMLEKYLLQTGLDKKT 251

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           S H +R   AT   D GA    +    G K++   + YT  + +  L
Sbjct: 252 SPHTLRHTFATHLLDGGADLRSVQELLGHKSLTTTQIYTHVSTKRLL 298


>gi|305681436|ref|ZP_07404243.1| tyrosine recombinase XerD [Corynebacterium matruchotii ATCC 14266]
 gi|305659641|gb|EFM49141.1| tyrosine recombinase XerD [Corynebacterium matruchotii ATCC 14266]
          Length = 305

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 55/296 (18%), Positives = 101/296 (34%), Gaps = 34/296 (11%)

Query: 71  LKWLISEYRKSAH-WGSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGV-ES 125
           L  +++ +          + N+  ++     +    +   G  D  ++TT  + + V E 
Sbjct: 2   LDDVVAAWLTHLKVEKGYSSNTLSNYRRDLYRYVTWLHAVGVTDLNQVTTSQVEAYVTEL 61

Query: 126 RKHTP---------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
           R+  P         SSA + L   R L K+A+ +  V  +    V  P          T 
Sbjct: 62  RRGDPDRNIKPLAVSSAARALIVARGLHKFALLEGLVTTDVAADVSPPATGRHLPDVLTI 121

Query: 177 EDMQQF-------KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQK 228
            ++ Q         +      + R   E L  +G R S+     V +  +N   ++ T K
Sbjct: 122 AEVTQLIDAIPTDDTASPIDLRDRALIELLYGTGARISEITALTVDNFHDNDGMLRITGK 181

Query: 229 TGTIITVELPDGFMK-----LLAMTPI----GKETFFINNDKQKMNATQFSIWFKAKATK 279
                 V +    M      L+   P+          +N   + ++        K  A +
Sbjct: 182 GNKQRLVPVGSQAMAAVDQYLVRARPVFATGASHALLLNTRGRTLSRQSAWAVLKTAAAR 241

Query: 280 AGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLG 332
           A + K  S H +R   AT   + GA    +    G  +V   + YT   A+ +R  
Sbjct: 242 AHITKDISPHTLRHSFATHLLEGGAGERVVQELLGHSSVTTTQIYTHVSAENLRQA 297


>gi|158320625|ref|YP_001513132.1| tyrosine recombinase XerD [Alkaliphilus oremlandii OhILAs]
 gi|158140824|gb|ABW19136.1| tyrosine recombinase XerD [Alkaliphilus oremlandii OhILAs]
          Length = 294

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 40/262 (15%), Positives = 98/262 (37%), Gaps = 24/262 (9%)

Query: 85  GSLAVNSRISFES-------YFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFL 137
             L+ N+   ++        Y D ++ +   F   K T       ++    + ++  + L
Sbjct: 16  KKLSKNTLECYKRDIVQYLIYIDHVVNQ-DLFLTNKTTVITYLLHLQKSGKSTATISRNL 74

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ----QFKSFWSEGSQPR 193
            S+R  +K+ +  + +  +P +++E PK + +     T E++     Q      +G++ +
Sbjct: 75  ASIRCFYKFLLLNKRMDYDPTINLEAPKIERKTPMTLTLEEVDLLLSQPLEITDKGARDK 134

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE----LPDGFMKLLA--- 246
              E L  +G+R ++     ++ +  N+  I+         +       +   K +    
Sbjct: 135 AMLELLYATGIRVTELISLNLEDVNLNLGFIRCHNGSKERFIPTGSIALESLTKYIENHR 194

Query: 247 ---MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAG 301
              +    + + F+N   + ++   F    KA   ++ + KS   + +R   AT     G
Sbjct: 195 ASFLKDPSERSLFLNYYGKPLSRQGFWKIIKAYTEQSNIEKSITPNTLRHSFATHLIQNG 254

Query: 302 ATAHELMATYGWKTVDQAETYT 323
           A    +    G   +   + Y 
Sbjct: 255 ADLKSVQEMLGHADISTTQIYA 276


>gi|304407019|ref|ZP_07388673.1| integrase family protein [Paenibacillus curdlanolyticus YK9]
 gi|304344006|gb|EFM09846.1| integrase family protein [Paenibacillus curdlanolyticus YK9]
          Length = 316

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 43/263 (16%), Positives = 93/263 (35%), Gaps = 23/263 (8%)

Query: 85  GSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHI-RSGVESRKHTPSSAI--QFLT 138
            SL+ ++ +S+E      IR    +G     ++   H+ R  +  R+    +A   ++  
Sbjct: 36  RSLSESTLMSYERDLRHFIRFAADAGISAPEQVQKHHMARYWLTLRQEGRKNASLSRYRV 95

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FWSEGSQPRL 194
           S+R  F++ + ++ V  +P   ++ PK  +   R  T   ++   +        G +   
Sbjct: 96  SLRAFFRYLMDKQRVTADPTADMDAPKPDSPPPRILTAVQVELLLASPDPAEPSGLRDSA 155

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK-- 252
             E +  +G+R S+     ++H+  ++  I+         V +       L         
Sbjct: 156 ILETMYATGIRVSELIALDLEHVHVSLGFIRCSANAKERIVPIGRAASASLEAYLQSGRE 215

Query: 253 ---------ETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAG 301
                    +  FIN   ++M         K  A  A +  + + H +R   A    + G
Sbjct: 216 RLLRDNSEEQAVFINRRGERMTRQGLWKIVKKHAALASIEGDLTPHSLRHSFAAHLLENG 275

Query: 302 ATAHELMATYGWKTVDQAETYTK 324
           A    +    G   +   + Y  
Sbjct: 276 ADVRAVQEMMGHAGLAATQKYVH 298


>gi|148380317|ref|YP_001254858.1| phage integrase [Clostridium botulinum A str. ATCC 3502]
 gi|148289801|emb|CAL83909.1| phage integrase [Clostridium botulinum A str. ATCC 3502]
          Length = 331

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 47/258 (18%), Positives = 90/258 (34%), Gaps = 13/258 (5%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQ 135
           Y  S     L++ +  +++     I           I T  +R  +  R      SS   
Sbjct: 62  YLASKKLDGLSIKTLRNYQYNL-AIFANHLRKPLVAINTMDLRMFLAVRCKSMKQSSVNG 120

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195
            ++ ++  F W   +EY+  NP   +++ K         T+E+++  +       + +  
Sbjct: 121 QISILKSFFGWLADEEYIPKNPAKKLKQTKEPKRLRHAMTEEEIELLRQACKT-DREKAL 179

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELP----DGFMKLLAMTPI 250
            EFL+ +G R S++       +     S+    K      V           K L     
Sbjct: 180 VEFLISTGCRLSEAVGVNKDDINWYEMSLNVIGKGDKERKVYFSTKAKILLKKYLLARSD 239

Query: 251 GKETFFINNDK--QKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHE 306
                F+ + K   ++         K  A++AG+NKS   H  R   AT   +AG     
Sbjct: 240 ENIALFVTSKKPYGRLGGRSVQREIKKIASRAGINKSIYPHLFRHSFATNKLNAGMPMPV 299

Query: 307 LMATYGWKTVDQAETYTK 324
           +    G ++    + Y +
Sbjct: 300 IQHLMGHESPATTQIYAE 317


>gi|15839120|ref|NP_299808.1| phage-related integrase [Xylella fastidiosa 9a5c]
 gi|9107738|gb|AAF85328.1|AE004060_3 phage-related integrase [Xylella fastidiosa 9a5c]
          Length = 339

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 57/332 (17%), Positives = 109/332 (32%), Gaps = 26/332 (7%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
           +P F  + + + G + YY+  G   R   P          Y  A+     + E+      
Sbjct: 11  IPRFRVRPQ-KSGVVYYYYDHGGTPRKETPLG------RDYGVAI-KRWAELEHAQITPA 62

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVE 124
              T + +   YR      + A N++         +++   D    +  I   ++R  ++
Sbjct: 63  IAVTFRHVAERYRAEVI-PTKAYNTQRVEHRCLAALLKFFDDPPAPFEAIKPVNVRQYLD 121

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVA-INPCLSVERPKRKTEGIRPWTKEDMQQFK 183
            R     SA + +     L+ WA  +      NPC  + R K +   +     +D     
Sbjct: 122 WRTSKV-SANREVALFSHLWNWARSKGITDLPNPCAGIRRNKERGRDVYI---DDTTYRA 177

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
            + +     R A +    +G R  D      + + + +  I+  KTG  + + +      
Sbjct: 178 VYHAADQTLRDAMDLAYLTGQRVGDVASMDERQIIDGVLLIRQAKTGAKVAISITGELAV 237

Query: 244 LLAMTPIGKE-------TFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFS 293
           L+      K           ++     +        FK     AG+ K       +R  +
Sbjct: 238 LIKRIFDHKRGLKLRSTRLIVDEKGFGLGCMALRYRFKKARAAAGIAKQVFQFRDLRAKA 297

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKG 325
           AT  AD      +  A  G  +V   E Y + 
Sbjct: 298 ATDKADLAGDIRQAQAQLGHTSVVMTEHYVRK 329


>gi|282853638|ref|ZP_06262975.1| tyrosine recombinase XerD [Propionibacterium acnes J139]
 gi|282583091|gb|EFB88471.1| tyrosine recombinase XerD [Propionibacterium acnes J139]
 gi|314967052|gb|EFT11151.1| tyrosine recombinase XerD [Propionibacterium acnes HL082PA2]
 gi|314983153|gb|EFT27245.1| tyrosine recombinase XerD [Propionibacterium acnes HL110PA3]
 gi|315092375|gb|EFT64351.1| tyrosine recombinase XerD [Propionibacterium acnes HL110PA4]
 gi|315103783|gb|EFT75759.1| tyrosine recombinase XerD [Propionibacterium acnes HL050PA2]
 gi|327327186|gb|EGE68962.1| tyrosine recombinase XerD [Propionibacterium acnes HL103PA1]
          Length = 306

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 44/284 (15%), Positives = 95/284 (33%), Gaps = 30/284 (10%)

Query: 70  TLKWLISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDF------DYRKITTKHIRSG 122
           ++   + +Y +       L+ N+  ++     +     G        +  ++  +  R  
Sbjct: 4   SVGGQVEDYLRHLVVERGLSDNTVQAYRRDLLRYQEYLGSRGIGSLAEVTRVDVEEFRRH 63

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           ++     P+S  + + ++R L ++AV    V  +    +    R     +  T + ++  
Sbjct: 64  LDHIGLAPASVTRCVVAVRNLHRFAVGSGQVQADVTAGMSPGTRSRRLPKALTMDQVESL 123

Query: 183 KSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-----NIFSIKTQKTGTII 233
            +       EG +     E L  +G R S+ C   V  ++      ++      K     
Sbjct: 124 LAAPDTSTVEGLRDAALLELLYGTGARVSEVCALDVDDIRRVLDDPDLGLRLIGKGDKER 183

Query: 234 TVELPDGFMKLLAMTPI-----------GKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
            V L     K +    I           G+    +N   ++++        +     AG+
Sbjct: 184 IVPLGSYAAKAVDAWLIRGRPAWAEIGNGEHALLLNTRGRRLSRQSAWAVIRRAGEAAGL 243

Query: 283 N---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           +    S H +R   AT   D GA    +    G  +V   + YT
Sbjct: 244 DVEHLSPHSLRHSYATHLLDGGADVRVVQELLGHSSVTTTQIYT 287


>gi|148266023|ref|YP_001232729.1| tyrosine recombinase XerC [Geobacter uraniireducens Rf4]
 gi|146399523|gb|ABQ28156.1| tyrosine recombinase XerD subunit [Geobacter uraniireducens Rf4]
          Length = 294

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 50/275 (18%), Positives = 97/275 (35%), Gaps = 23/275 (8%)

Query: 72  KWLISEY--RKSAHWGSLAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVE 124
           K  I ++    S    +++ ++  ++ S  +Q        +    D   +T   IR  + 
Sbjct: 2   KQAIEQFCRYLSTE-RNVSPHTLGAYRSDLEQFLAFIDREQRPGADVNSVTHLLIRRYMA 60

Query: 125 S--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM--- 179
              + H  SS  + L ++R  F++ +R+   A NP   V  PK + +       +++   
Sbjct: 61  QLHKDHQKSSIGRKLAAIRAFFRYLLREGLAAKNPAELVSTPKMEKKVPFHLNIDEVTAL 120

Query: 180 -QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVEL 237
            +  +S  S   + R   E L   G+R S+     V  +  +   +    K      V +
Sbjct: 121 VEAPQSADSLSLRNRAILETLYSCGIRVSELTGLNVGDVDMDERLARVLGKGNKERIVPV 180

Query: 238 PDGFMKLLAM------TPIGKETFFINNDKQKMNATQFSIWFKAKATK-AGVNK-SAHGV 289
                  LA        P       +N    ++ +   +        K A + K S H +
Sbjct: 181 GTYARNALAAYLASRNNPSMDAPLILNARGGRLTSRSVARIIDKYIIKIAAMKKVSPHTL 240

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           R   AT   + GA    +    G  ++   + YT 
Sbjct: 241 RHTFATHMLEGGADLRAIQELLGHSSLSTTQKYTH 275


>gi|76579073|gb|ABA48548.1| tyrosine recombinase XerD [Burkholderia pseudomallei 1710b]
          Length = 508

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 53/307 (17%), Positives = 97/307 (31%), Gaps = 28/307 (9%)

Query: 52  TGSTPKREYINSPRKKPTTLKWLISE----YRKSAHW--GSLAVNSRISFESYFDQIIRK 105
            G  P +           +  WL S         A W    L+ N+  ++        + 
Sbjct: 192 AGRAPAQPADRPVDALAASPAWLDSRASIDLFCDAMWLEHGLSRNTLDAYRRDLQLFAQW 251

Query: 106 SGDFDYRKIT---TKHIRSGVESRKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV 161
                   +       +   + +R     +S+ + L+  R  + WAVR+   A++P L +
Sbjct: 252 LAARHVASVDHASEPTLTEYIAARSDGKATSSNRRLSVFRRYYGWAVREHRAAVDPTLRI 311

Query: 162 ERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217
              K+        ++  ++   +        G + R   E +  SGLR S+        +
Sbjct: 312 ASAKQAPRFPSTLSEAQVEALLAAPDVDTPLGLRDRTMLELMYASGLRVSELVTLKTVEV 371

Query: 218 QNNIFSIKTQKTGTIITV---------ELPDGFMKLLAMT--PIGKETFFINNDKQKMNA 266
             N   ++    G+   +          +                 +  F+      M  
Sbjct: 372 GLNEGVVRVTGKGSKERLVPFGEVAHGWIERYLRDARPALLGARAADALFVTARGDGMTR 431

Query: 267 TQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            QF    K  A +A V  + S H +R   AT   + GA    +    G   +   + YT 
Sbjct: 432 QQFWNIIKRHAQQADVRVHLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTH 491

Query: 325 GADRIRL 331
            A R RL
Sbjct: 492 VA-RERL 497


>gi|320659984|gb|EFX27526.1| Phage integrase family protein [Escherichia coli O55:H7 str. USDA
           5905]
          Length = 356

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 62/343 (18%), Positives = 114/343 (33%), Gaps = 25/343 (7%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHE---STFIPAYMSALTGSTPKREYINS 63
           LPP +     R+     Y     G+   L        +  I A +   +G   K      
Sbjct: 12  LPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLTARI 68

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
                 TL   +  Y K      +   + I++ S    I R   D     ITTK I + +
Sbjct: 69  NSDNSVTLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAML 128

Query: 124 ESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
                     SA    +++   F+ A+ + ++  NP  +    K +    R    E ++ 
Sbjct: 129 NGYIDEGKAVSAKLIRSTLSDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEYLKI 188

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE----- 236
           +++  S     RLA E  + +G R  D C      + +    ++  KTG  I +      
Sbjct: 189 YQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTTLHV 248

Query: 237 ----LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NKSAH 287
               +            +G ET   +  ++ +++   S +F      +G+       + H
Sbjct: 249 DALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPPTFH 308

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
            +R   +    +   +        G K+   A  Y    DR R
Sbjct: 309 ELR-SLSARLYEKQISDKFAQHLLGHKSDTMASQY--RDDRGR 348


>gi|260655111|ref|ZP_05860599.1| integrase/recombinase XerD [Jonquetella anthropi E3_33 E1]
 gi|260630222|gb|EEX48416.1| integrase/recombinase XerD [Jonquetella anthropi E3_33 E1]
          Length = 319

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 51/288 (17%), Positives = 102/288 (35%), Gaps = 24/288 (8%)

Query: 71  LKWLISEYRKSAHWGSL----AVNSRISFESYFDQIIR---KSGDFDYRKITTKHIR--- 120
           L+  I  Y     W SL    +  + +++ S  +Q      + G+ D   +T + +R   
Sbjct: 26  LETWIGRY---IDWISLAQNCSPATALNYRSDLEQFAAFAGQKGEADLSALTPERVRLFI 82

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
            G+     + +S  + L+++R    +   Q  +  +P L +  PK      +  T++ + 
Sbjct: 83  RGLSGWGLSATSVSRKLSALRGFCGYLTDQSAIPSDPTLPIRGPKWPDHLPQALTQDAVN 142

Query: 181 QFKSFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVE 236
           +  S        ++ R   E    +GLR ++        L      I     G+    V 
Sbjct: 143 RLISAAGTIEPAARNRCLLELAYSAGLRVAELVSLKWSDLDETERWITVMGKGSKERMVP 202

Query: 237 LPDGFMKLLA-----MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVR 290
                   LA       P  K   F     + +         +A +  AG    S H +R
Sbjct: 203 YGQWAASALAEWKAQCPPSEKGWVFPGKGGKSLTERTVHRLVEAASQLAGTPGASPHTLR 262

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSR 337
              AT   + GA+   +    G +++   + Y + + +R+R    +  
Sbjct: 263 HCFATHMLEGGASVKAVQELLGHESLLTTQRYLRISPERLRRSYDDVN 310


>gi|323341690|ref|ZP_08081923.1| tyrosine recombinase XerC [Erysipelothrix rhusiopathiae ATCC 19414]
 gi|322464115|gb|EFY09308.1| tyrosine recombinase XerC [Erysipelothrix rhusiopathiae ATCC 19414]
          Length = 296

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 36/276 (13%), Positives = 94/276 (34%), Gaps = 20/276 (7%)

Query: 74  LISEYRKSAHWGSLA-VNSRISFESYFDQIIRKSGDFDYRKITT---KHIRSGVESRKHT 129
           L+ ++ +     + +  ++ +++E    Q +         ++         + +     +
Sbjct: 6   LVMDFMRHIAITNTSSEHTNVAYERDIRQFLDFIEGQAVHEVDRLMAYDYLNMLYDSNLS 65

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE- 188
            SS  + ++++R  +K+      +  NP   ++  ++          ++++       E 
Sbjct: 66  SSSVARKISTLRSFYKFLQINYGLTDNPFQQIKIKRQGRHLPHFLMYDEIETLLLSCDES 125

Query: 189 --GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT--------VELP 238
             G + ++  E +   GLR S+     +  L     S++    G            V   
Sbjct: 126 VLGVRNQVMIELMYACGLRVSEVVDLQIHDLDLTERSLRVIGKGNKERQLFFYESLVPKL 185

Query: 239 DGFMKLLAMTPI---GKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293
             ++ L           E  F+N   + +         + +   AG+      H +R   
Sbjct: 186 WSYLNLYRPQFPNVSDTEAVFLNQRGKPLTPRGIQHILEHQGKTAGLRMKLHPHMLRHSF 245

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           AT   D GA+   +    G +++   + YT  + + 
Sbjct: 246 ATHLLDNGASLRVVQTLLGHESLSTTQIYTHVSMQK 281


>gi|238026028|ref|YP_002910259.1| phage-related integrase [Burkholderia glumae BGR1]
 gi|237875222|gb|ACR27555.1| Phage-related integrase [Burkholderia glumae BGR1]
          Length = 339

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 63/345 (18%), Positives = 117/345 (33%), Gaps = 41/345 (11%)

Query: 2   TPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYI 61
           T +L LPP +  ++T  GK  YY+  G   R       +  F+ A            E  
Sbjct: 6   TKNLHLPPRMRIKQTSSGKTYYYYDIGGKPRRWKALGGD--FVEALRL-----YADLEQG 58

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI--IRKSGDFDYRKITTKHI 119
           +       T + +   Y       S AV +R +     +++     S      +I   HI
Sbjct: 59  DRTASTLVTFRHVAERYLVDV-LPSKAVETRRTNLLQLEKLYSFFDSPPAPLDEIKPIHI 117

Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI-NPCLSVERPKRKTEG-------- 170
           R  ++ RK +P SA + +     +F  A         NPC  V + +             
Sbjct: 118 RKYLDWRKASPVSANREIALFSHIFNKAREWGATDRPNPCAGVRKHREAGRDVYVGDQLY 177

Query: 171 IRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
            R W K D+             R A +    +G R +D  +   + +++ + +++  KTG
Sbjct: 178 RRVWEKADI-----------PLREAMDLAYLTGQRPADVLKMDERDIRDGVVTVRQNKTG 226

Query: 231 TIITVELPDGFMKLLAMTPIGK-------ETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
             + +E+      LL      K           ++   + +  +     F      AG+ 
Sbjct: 227 ARLRIEIVGELATLLDRIAARKIDHNPRSTRLIVDEQGRPLGQSALRFRFDRTREAAGIA 286

Query: 284 K---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           K       +R  + T   ++ +      +  G  +V   E Y + 
Sbjct: 287 KAEFQFRDLRAKAGTD-KESASDLRGAQSLLGHGSVAMTEHYVRK 330


>gi|254669734|emb|CBA03915.1| site-specific recombinase [Neisseria meningitidis alpha153]
          Length = 291

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 45/280 (16%), Positives = 97/280 (34%), Gaps = 21/280 (7%)

Query: 74  LISEYRKSAHWGS--LAVNSRISFESYFDQIIRKSGDFD--YRKITTKHIRSGVESRKHT 129
           LI    ++  W    L+ N+   +    ++I R+        +      + + V      
Sbjct: 5   LIDRLLETL-WLDRRLSQNTLNGYRRDLEKIARRLSQSGRMLKDADEADLAAAVYVDGEQ 63

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---- 185
            SS  + L++ + L+ W  R+     NP   ++ PK         T++ + +  +     
Sbjct: 64  RSSQARALSACKRLYIWMEREGIRTDNPTRLLKPPKIDKNIPTLITEQQISRLLATPDTD 123

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG---- 240
              G + +   E +  +GLR S++       +  +   I    K      + +       
Sbjct: 124 TPHGLRDKALLELMYATGLRVSEAVGLNFGSVDLDRGCITALGKGDKQRMIPMGQESAYW 183

Query: 241 ------FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFS 293
                   + L +     +  F++  K  ++     +  K  A++AG+   S H +R   
Sbjct: 184 VERYYTEARPLLLKGRNCDALFVSQKKTGISRQLAWMIVKEYASQAGIGHISPHSLRHAF 243

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           AT     G     +    G   ++  + YT  A+    G+
Sbjct: 244 ATHLVRHGLDLRVVQDMLGHADLNTTQIYTHVANVWLQGV 283


>gi|315646363|ref|ZP_07899481.1| integrase family protein [Paenibacillus vortex V453]
 gi|315278006|gb|EFU41326.1| integrase family protein [Paenibacillus vortex V453]
          Length = 294

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 45/275 (16%), Positives = 98/275 (35%), Gaps = 24/275 (8%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH------IRSGVE 124
           K  + EY         L+ ++  S+ +  +  I  + D +       +          + 
Sbjct: 2   KQYLDEYVTYLEEVKRLSRSTIESYRADLNGFIEYAADREVTHPQDVNRTVLGLYLGRLR 61

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
            +    SS ++   S+R  F++ VRQ  +  +P   ++RPK + +  +  T E + +  S
Sbjct: 62  QQGKAASSQLRCTASLRSFFQYLVRQSVIGQDPTQLLDRPKPERKPPQAVTIEQVDKLLS 121

Query: 185 F----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-KTGTIITVELPD 239
                  +G++ R   E L  SG++ S+     +  L   +  ++     G    + +  
Sbjct: 122 APDSDTPQGARDRAMLELLYASGIKVSELVSLSIHDLNMEMRFLRCAVPGGKERILPISQ 181

Query: 240 GFMKLLA----------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287
              + +A          +    +E  F+N+   ++    F    K     A +++  + H
Sbjct: 182 IAAQSVAYYMRDMRSQLIRDAEEEALFLNSLGTRLTRQGFWKIIKKYGKLAEIDEEITPH 241

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
            +R   A      GA    +    G   +     Y
Sbjct: 242 TLRHSFAIHLLQNGADLRSVQEMLGHSALSTTGMY 276


>gi|192362212|ref|YP_001983742.1| tyrosine recombinase XerC [Cellvibrio japonicus Ueda107]
 gi|190688377|gb|ACE86055.1| tyrosine recombinase XerC [Cellvibrio japonicus Ueda107]
          Length = 313

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 40/267 (14%), Positives = 99/267 (37%), Gaps = 22/267 (8%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIR---SGVESRKHTPS 131
           Y +S      + +++ ++    ++     R +G     ++  + +R   + +  +     
Sbjct: 18  YMRSE--KQFSPHTQSNYARDLEKFQRYCRDAGIQQLTEVDARAVRMAVASLHRQGLAGK 75

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS---E 188
           S  ++L+S+R  F++A+R  +++INP   +  PK   +  +    +   QF +       
Sbjct: 76  SLQRWLSSLRGFFQYAIRHHWMSINPADGIAAPKTPKKLPKTLDVDQTAQFVAVEGDDFI 135

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVE--------LPD 239
             + R   E +  SGLR ++     +  +   +     T K     T+         L D
Sbjct: 136 HKRDRALLELIYSSGLRLAEVTSLNLGDIDWGDAMVTVTGKGSKTRTLPVGSVAIAALKD 195

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATIS 297
              +     P  +   FI    ++++     +  +  + + G++     H +R   A+  
Sbjct: 196 WLSQREQYAPASEPALFITQRGKRISHRAVQLRLQQLSVQQGMDNPVHPHMLRHSFASHM 255

Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324
            ++      +    G   +   + YT 
Sbjct: 256 LESSGDLRLVQELLGHANISTTQIYTH 282


>gi|219848360|ref|YP_002462793.1| integrase family protein [Chloroflexus aggregans DSM 9485]
 gi|219542619|gb|ACL24357.1| integrase family protein [Chloroflexus aggregans DSM 9485]
          Length = 299

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 38/269 (14%), Positives = 96/269 (35%), Gaps = 26/269 (9%)

Query: 82  AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE------SRKHTPSSAIQ 135
           A    ++ N+  ++ +  +Q+     +    +    +  + +        +K+  S+  +
Sbjct: 13  ADERKMSANTTAAYRTDLEQLCSFLQERGIEQWNDVNTEAMLAFVITLKEKKYANSTVAR 72

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW------SEG 189
            L +++  F +   +  V  +P   ++ P+      +  ++  + +            EG
Sbjct: 73  RLAAIKSFFSFLRERNVVHHDPTEQLDAPRVDRFPPKAISQHQVDELLELPLQNNSGPEG 132

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG-------- 240
            + +   E L  +G+R S+     +  +     +++   + G    + L +         
Sbjct: 133 LRDKAMLEVLYATGMRVSELVALNIDDISFTSKTVRCLGRQGRERILPLSEAALTALEEY 192

Query: 241 ----FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSAT 295
                 KL        E  F+N+  +++    F +  K  A +AG+ + + H +R   A 
Sbjct: 193 LDIARPKLANHAHGNDEALFLNHRGKRLTRQGFWLILKEYADRAGLHDLTPHMLRHSFAA 252

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTK 324
                G    EL    G  ++   + YT 
Sbjct: 253 HQLRNGVDLRELQERLGHASIATTQIYTH 281


>gi|297626543|ref|YP_003688306.1| Site-specific recombinase [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
 gi|296922308|emb|CBL56880.1| Site-specific recombinase [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
          Length = 331

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 47/316 (14%), Positives = 96/316 (30%), Gaps = 38/316 (12%)

Query: 52  TGSTPKREYINSPRKKPTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSG--- 107
               P              L   + +Y         L+ N+  ++     + +R      
Sbjct: 5   AARPPSHGNKPVSGPTAGRLGNWLEDYLDHLGVERGLSPNTVAAYRRDLTRYLRHLSSRG 64

Query: 108 --------DFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL 159
                     D      +  R     +   PSS  + + ++R+   +A R+  V  N   
Sbjct: 65  IDDPSRITTADVTSFEEELSRGDASHKALAPSSVGRAVVAVRMFHGFAAREGLVDHNVAA 124

Query: 160 SVERPKRKTEGIRPWTKEDMQQF----KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ 215
           ++  P+      +    +++ +     +     G +    FE L  +G R S++    V 
Sbjct: 125 ALHPPRAGKRLPKALGVDEVARLIDSIERQTPIGLRDAALFEVLYGTGARISEALSLDVD 184

Query: 216 HLQ------NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK------------ETFFI 257
            L       +    +   K      V L       +    +                 F+
Sbjct: 185 DLTRVLADPDGPLRV-VGKGNKERVVPLGSYARSAVQAWLVRGRPALAERAREFTPALFL 243

Query: 258 NNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKT 315
           N    +++        + +A +AG+      H +R   AT   D GA    +    G  +
Sbjct: 244 NTRGARLSRQSAWEALRTRARQAGITADIGPHSLRHSFATHLLDGGADIRVVQELLGHAS 303

Query: 316 VDQAETYTK-GADRIR 330
           V   + YT+  A ++R
Sbjct: 304 VSTTQIYTEVTAQQLR 319


>gi|262406148|ref|ZP_06082698.1| tyrosine recombinase XerC [Bacteroides sp. 2_1_22]
 gi|294644043|ref|ZP_06721820.1| tyrosine recombinase XerC [Bacteroides ovatus SD CC 2a]
 gi|294810195|ref|ZP_06768862.1| tyrosine recombinase XerC [Bacteroides xylanisolvens SD CC 1b]
 gi|298483048|ref|ZP_07001229.1| tyrosine recombinase XerC [Bacteroides sp. D22]
 gi|262357023|gb|EEZ06113.1| tyrosine recombinase XerC [Bacteroides sp. 2_1_22]
 gi|292640567|gb|EFF58808.1| tyrosine recombinase XerC [Bacteroides ovatus SD CC 2a]
 gi|294442607|gb|EFG11407.1| tyrosine recombinase XerC [Bacteroides xylanisolvens SD CC 1b]
 gi|298270792|gb|EFI12372.1| tyrosine recombinase XerC [Bacteroides sp. D22]
          Length = 293

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 51/276 (18%), Positives = 105/276 (38%), Gaps = 24/276 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIR----KSGDFDYRKITTKHIRSGV---ES 125
           LI  +     +  + +  + +++     Q+      + G F+  ++  + IR  +     
Sbjct: 2   LIESFLDYLQYERNYSEKTVLAYGEDIKQLQEFAQEEYGKFNPLEVEAELIREWIVSLMD 61

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           + +T +S  + L+S+R  +K+ +RQ    I+P   ++ PK K        + +M +    
Sbjct: 62  KGYTSTSVNRKLSSLRTFYKYLLRQGETTIDPLRKIKGPKNKKPLPVFLKENEMNRLLDE 121

Query: 186 WS-----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPD 239
                  +G + RL  E    +G+R S+      + +  +   +K T K      +   D
Sbjct: 122 TDFGEGFKGCRDRLIIEMFYATGMRLSELIGLDNKDVDFSASLLKVTGKRNKQRLIPFGD 181

Query: 240 GFMKLL--------AMTPIGKETFFINNDKQKMNATQFSIWFKA-KATKAGVNK-SAHGV 289
              +L+           P   E FFI  + +++         K   +  A + K S H +
Sbjct: 182 ELQELMLEYINVRNETIPERSEAFFIRENGERLYKNLVYNLVKRNLSKVATLKKKSPHVL 241

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           R   AT   +  A    +    G +++   E YT  
Sbjct: 242 RHTFATTMLNNEAELGAVKELLGHESITTTEIYTHA 277


>gi|91205255|ref|YP_537610.1| integrase [Rickettsia bellii RML369-C]
 gi|239947373|ref|ZP_04699126.1| integrase [Rickettsia endosymbiont of Ixodes scapularis]
 gi|91068799|gb|ABE04521.1| Integrase [Rickettsia bellii RML369-C]
 gi|239921649|gb|EER21673.1| integrase [Rickettsia endosymbiont of Ixodes scapularis]
          Length = 388

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 47/283 (16%), Positives = 102/283 (36%), Gaps = 13/283 (4%)

Query: 52  TGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY 111
            G  P  E     ++   T K     Y     +  +       + +  D+  +   +   
Sbjct: 90  QGYNPIEEKARLSKEP--TFKEFYDRYL--DEYSKINNKRWKDYAASVDRYAKHLYNRKI 145

Query: 112 RKITTKHIRSGVESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170
             I    I+       K     A +FL  +  +F  A+  E + +NP + +++ K ++  
Sbjct: 146 STIQKADIQELFNKLTKTGKYGANRFLEVLSPVFSKAIEWELLTVNPVIGIKKHKEQSR- 204

Query: 171 IRPWTKEDMQQFKSFWSE--GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKT 226
            R  T+E++ +F +  SE      +  F   LY+ +R  +      + +   +    +  
Sbjct: 205 DRYLTREEIPRFFTAISEEQNQVMKDFFLIALYTSVRKDNVLTMRWEQISFADKQLYLPD 264

Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN--ATQFSIWFKAKATKAGV-N 283
            K G    + L D  +++L       ++ ++   +   +    +    +K    KAG+ N
Sbjct: 265 TKNGDPHRLPLLDQAVEILKARKEQSDSIWVFPSETSSSGHLQEPKKAWKRICKKAGIEN 324

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
              H +R+   +  A  GA  + +      +       YT+ A
Sbjct: 325 LRIHDLRRTIPSWMAMTGANQYVIGQLLNHRDPRSTAVYTRLA 367


>gi|126736338|ref|ZP_01752080.1| tyrosine recombinase XerD [Roseobacter sp. CCS2]
 gi|126714159|gb|EBA11028.1| tyrosine recombinase XerD [Roseobacter sp. CCS2]
          Length = 313

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 45/269 (16%), Positives = 90/269 (33%), Gaps = 29/269 (10%)

Query: 90  NSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGV---ESRKHTPSSAIQFLTSMRVLF 144
           N+++++           G     +   +  H+ S +   E+     S+  + L++++ L+
Sbjct: 28  NTQLAYARDLQDFAGWLGPKGLHFSDASRDHVESYLIDCEAEGLAKSTRARRLSAIKQLY 87

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KSFWSEGSQPRLAFEFLL 200
           ++A  + +   NP + ++ P R+    +  + E++ +     ++   E  +     E L 
Sbjct: 88  RFAFEEGWRDDNPAIQIKGPGREQRLPKTLSIEEVDRLLDAARNTPKEALRNACLMELLY 147

Query: 201 YSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKLLAM------------ 247
            +G+R ++     V   + +    +   K      V L       LA             
Sbjct: 148 ATGMRVTELVSLPVSAARGDPRMLLVRGKGDKERLVPLSPPARAALATYLTARDKAEDAG 207

Query: 248 ----TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADA 300
                P  K  F        +   +F    K  A   GV     + H +R   AT     
Sbjct: 208 RKDGKPASKFLFPSRGKSGHLTRHRFFGLIKEFAVAGGVSPAKVTPHTLRHAFATHLLAG 267

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRI 329
           GA    +    G   V   E YT   D  
Sbjct: 268 GADLRSIQTMLGHADVATTEIYTHVLDER 296


>gi|295085443|emb|CBK66966.1| tyrosine recombinase XerC subunit [Bacteroides xylanisolvens XB1A]
          Length = 293

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 51/276 (18%), Positives = 105/276 (38%), Gaps = 24/276 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIR----KSGDFDYRKITTKHIRSGV---ES 125
           LI  +     +  + +  + +++     Q+      + G F+  ++  + IR  +     
Sbjct: 2   LIESFLDYLQYERNYSEKTVLAYGEDIKQLQEFAQEEYGKFNPLEVEAELIREWIVSLMD 61

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           + +T +S  + L+S+R  +K+ +RQ    I+P   ++ PK K        + +M +    
Sbjct: 62  KGYTSTSVNRKLSSLRTFYKYLLRQGETTIDPLRKIKGPKNKKPLPVFLKENEMNRLLDE 121

Query: 186 WS-----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPD 239
                  +G + RL  E    +G+R S+      + +  +   +K T K      +   D
Sbjct: 122 TDFGEGFKGCRDRLIIEMFYATGMRLSELIGLDNKDVDFSASLLKVTGKRNKQRLIPFGD 181

Query: 240 GFMKLL--------AMTPIGKETFFINNDKQKMNATQFSIWFKA-KATKAGVNK-SAHGV 289
              +L+           P   E FFI  + +++         K   +  A + K S H +
Sbjct: 182 ELQELMLEYISVRNETIPERSEAFFIRENGERLYKNLVYNLVKRNLSKVATLKKKSPHVL 241

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           R   AT   +  A    +    G +++   E YT  
Sbjct: 242 RHTFATTMLNNEAELGAVKELLGHESITTTEIYTHA 277


>gi|229015121|ref|ZP_04172177.1| Integrase/recombinase [Bacillus mycoides DSM 2048]
 gi|228746174|gb|EEL96121.1| Integrase/recombinase [Bacillus mycoides DSM 2048]
          Length = 330

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 45/280 (16%), Positives = 102/280 (36%), Gaps = 26/280 (9%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISF----ESYFDQIIRKSGDFDYRK---ITTKHIRS- 121
           T    I+ + K     +L   +   +    +++ + +  +  D    K   +T +H++  
Sbjct: 26  TFDEAITLFVKDCELRNLRPFTIKYYLNELQAFLNLLTEQEIDVSILKPYNMTEEHVKEN 85

Query: 122 ----GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
                   R     S    L ++R  + +  +Q+++  NP  +++  K +   I  ++KE
Sbjct: 86  VILYMKNYRGIKVVSINTRLRALRAFYNFLYKQKHIPRNPMENIKLLKDRKRIIPTFSKE 145

Query: 178 DMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGT 231
            + +     +     G +       +L +G+R ++     V+ ++  +++  I+  K+  
Sbjct: 146 QLNKLFRQPNLRTFTGVRDYTIMMLMLETGIRINELVGLSVKDIRWEDSLLVIRNAKSYR 205

Query: 232 IITVEL----PDGFMKLLAMTP-IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--- 283
              V +         K +A+   +     F+  D  ++               A +    
Sbjct: 206 ERQVPIQKDMKSQLKKYIAIRGYVESSALFVTVDGTRLTRRGIQQRISIYGNMAQIKDVR 265

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
            S H  R   A +S   GA   EL A  G   ++   TY 
Sbjct: 266 CSPHTFRHTFAKLSVQQGANIFELQAILGHTNMEIVRTYV 305


>gi|121634549|ref|YP_974794.1| putative integrase/recombinase [Neisseria meningitidis FAM18]
 gi|120866255|emb|CAM09996.1| putative integrase/recombinase [Neisseria meningitidis FAM18]
 gi|254671814|emb|CBA03927.1| site-specific recombinase [Neisseria meningitidis alpha275]
 gi|316983737|gb|EFV62718.1| tyrosine recombinase XerD [Neisseria meningitidis H44/76]
 gi|325197973|gb|ADY93429.1| tyrosine recombinase XerD [Neisseria meningitidis G2136]
 gi|325200561|gb|ADY96016.1| tyrosine recombinase XerD [Neisseria meningitidis H44/76]
          Length = 291

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 46/280 (16%), Positives = 97/280 (34%), Gaps = 21/280 (7%)

Query: 74  LISEYRKSAHWGS--LAVNSRISFESYFDQIIRKSGDFD--YRKITTKHIRSGVESRKHT 129
           LI    ++  W    L  N+   +    ++I R+        +      + + V      
Sbjct: 5   LIDRLLETL-WLDRRLNQNTLNGYRRDLEKIARRLSQSGRMLKDADEADLAAAVYVDGEQ 63

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---- 185
            SS  + L++ + L+ W  R+     NP   ++ PK         T++ + +  +     
Sbjct: 64  RSSQARALSACKRLYIWMEREGIRTDNPTRLLKPPKIDKNIPTLITEQQISRLLAAPDTD 123

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG---- 240
              G + +   E +  +GLR S++      ++  +   I    K      V +       
Sbjct: 124 TPHGLRDKALLELMYATGLRVSEAVGLNFGNVDLDRGCITALGKGDKQRMVPMGQESAYW 183

Query: 241 ----FMKLLAMTPIGK--ETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFS 293
               + +       G+  +  F++  K  ++     +  K  A +AG+   S H +R   
Sbjct: 184 VGRYYTEARPALLKGRSCDALFVSQKKTGISRQLAWMIVKEYAGRAGIGHISPHSLRHAF 243

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           AT     G     +    G   ++  + YT  A+    G+
Sbjct: 244 ATHLVQHGLDLRVVQDMLGHADLNTTQIYTHVANVWLQGV 283


>gi|222529770|ref|YP_002573652.1| tyrosine recombinase XerD [Caldicellulosiruptor bescii DSM 6725]
 gi|312622005|ref|YP_004023618.1| tyrosine recombinase xerd [Caldicellulosiruptor kronotskyensis
           2002]
 gi|222456617|gb|ACM60879.1| tyrosine recombinase XerD [Caldicellulosiruptor bescii DSM 6725]
 gi|312202472|gb|ADQ45799.1| tyrosine recombinase XerD [Caldicellulosiruptor kronotskyensis
           2002]
          Length = 291

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 42/265 (15%), Positives = 96/265 (36%), Gaps = 22/265 (8%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYR-----KITTKHIRSGVESRKHTPSSAIQFLTSM 140
             + N+  S+     + I    D   +     + T       ++    + S+  + + S+
Sbjct: 16  RFSQNTISSYLRDAKKYIEFLDDIKIKLENTSQTTLIAYIISMQKGGKSNSTIARAIVSL 75

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLAF 196
           +V +++   Q+ V I   + +E PK +    +  T++++++  S   E    G + +   
Sbjct: 76  KVFYEFLKIQDIVDIG-KIEIEPPKLEKSPPQILTRDEVERLLSCPKEDDIKGIRDKAML 134

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA---------- 246
           E L  +G+R S+     +  +      I  +       + +    +  +           
Sbjct: 135 ELLYATGIRVSELINLNLDDINLEHGYIICKNKKRDRVIPIGSYAISAVEKYLRHSRPYL 194

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATA 304
                +E  F+N   ++M    F    K  A  A ++K  + H +R   AT   + GA  
Sbjct: 195 AKSKDEEALFLNFSGERMTRQGFWKIVKFYAQNAKIDKEITPHVLRHSFATHLIENGADV 254

Query: 305 HELMATYGWKTVDQAETYTKGADRI 329
             +    G   +   + Y + A+  
Sbjct: 255 RAVQQMLGHADISTTQRYLQVANVK 279


>gi|260593377|ref|ZP_05858835.1| putative integrase [Prevotella veroralis F0319]
 gi|260534653|gb|EEX17270.1| putative integrase [Prevotella veroralis F0319]
          Length = 408

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 60/296 (20%), Positives = 105/296 (35%), Gaps = 47/296 (15%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESY---FDQIIRKSGDFD----------YRKITTK 117
            +  I +Y            ++           +      D              +IT  
Sbjct: 123 FQDYIDKY------------TKKDIRMLNIALRRFKDFLNDTPEYKKFTKRITPEQITKD 170

Query: 118 HIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR--P 173
            I +  E  +       A       + + K+A+  + +  NPC  +   K   + ++   
Sbjct: 171 MIEAFTEYLQGRSVGEGAKSIYARFKKVIKYAIEHDVITKNPCNGI-VIKVDDQILKKDV 229

Query: 174 WTKEDMQQFKSFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKT 229
            + +++QQ  +   E   P  R AF F LYSGLR  D       ++   N +   +  KT
Sbjct: 230 LSLDEIQQLIATHDERQNPEIRRAFIFCLYSGLRYCDVKDLTFANVDYSNKLLKFEQSKT 289

Query: 230 G-----TIITVELPDGFMKLL-AMTPIG-KETFFINNDKQKMNATQFSIWFKAKATKAGV 282
                 + + + L DG ++L+   TP   K+++  N    +M       W K     AG+
Sbjct: 290 KGHSSSSGVIIPLNDGLLRLIGEPTPAQTKDSYIFNLPSYEMCLKSLQRWVK----SAGI 345

Query: 283 NK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
           NK  S H  R   A    + GA    + +  G   +   E YT+  D ++    NS
Sbjct: 346 NKHISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAIDSLKQEAINS 401


>gi|314923700|gb|EFS87531.1| tyrosine recombinase XerD [Propionibacterium acnes HL001PA1]
          Length = 306

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 44/284 (15%), Positives = 95/284 (33%), Gaps = 30/284 (10%)

Query: 70  TLKWLISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDF------DYRKITTKHIRSG 122
           ++   + +Y +       L+ N+  ++     +     G        +  ++  +  R  
Sbjct: 4   SVGGHVEDYLRHLVVERGLSDNTVQAYRRDLLRYQEYLGSRGIGSLAEVTRVDVEEFRRH 63

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           ++     P+S  + + ++R L ++AV    V  +    +    R     +  T + ++  
Sbjct: 64  LDHIGLAPASVTRCVVAVRNLHRFAVGSGQVQADVTAGMSPGTRSRRLPKALTMDQVESL 123

Query: 183 KSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-----NIFSIKTQKTGTII 233
            +       EG +     E L  +G R S+ C   V  ++      ++      K     
Sbjct: 124 LAAPDTSTVEGLRDAALLELLYGTGARVSEVCALDVDDIRRVLDDPDLGLRLIGKGDKER 183

Query: 234 TVELPDGFMKLLAMTPI-----------GKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
            V L     K +    I           G+    +N   ++++        +     AG+
Sbjct: 184 IVPLGSYAAKAVDAWLIRGRPAWAEIGNGEHALLLNTRGRRLSRQSAWAVIRRAGEAAGL 243

Query: 283 N---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           +    S H +R   AT   D GA    +    G  +V   + YT
Sbjct: 244 DVEHLSPHSLRHSYATHLLDGGADVRVVQELLGHSSVTTTQIYT 287


>gi|312114222|ref|YP_004011818.1| integrase family protein [Rhodomicrobium vannielii ATCC 17100]
 gi|311219351|gb|ADP70719.1| integrase family protein [Rhodomicrobium vannielii ATCC 17100]
          Length = 393

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 56/354 (15%), Positives = 117/354 (33%), Gaps = 30/354 (8%)

Query: 10  FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
           FV K R  +G+  +    G         P            L G       I + ++   
Sbjct: 40  FVLKTRV-NGRQRW-VTIGKF-----GSPWTVETARREALRLLGEAASGNDIGAEKQAKR 92

Query: 70  T----LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE 124
                   +  ++    H+  L   +R S+ +     +    G      I    + +   
Sbjct: 93  AKGLLFGHVADQFIA-IHFPKLKPRTRESYGTIIRLHLKPAFGATPIADIRKTSVATFHA 151

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEY--VAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
               TP +A   L+ +  +  WA  Q       NPC ++ R  R+T+  R  + +++ + 
Sbjct: 152 RHAETPRNANHALSVLSKIMNWAEEQGLRPAESNPCRNI-RKYRETKRERYLSPDELARL 210

Query: 183 KSFWSEGSQPR-------LAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTII 233
            +  +     +        A   LL +G R S+       ++     I ++   KTG  +
Sbjct: 211 GAALAAAEDDKTVDPYIIAAIRLLLLTGARLSEILTLRWTYVDTYRRILNLPDSKTGAKV 270

Query: 234 TVELPDGFMKLLAMTPI-GKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRK 291
            + L    + LL   P      F +    +  +       ++    +AG++    H +R 
Sbjct: 271 -IPLNQAALDLLGTLPRLNSNPFVLVGRVEGQHLVNLQKPWRRIRKEAGLDDVRIHDLRH 329

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345
             A++S   G +   +    G         Y   AD  ++  +      +++ +
Sbjct: 330 SFASVSVGLGGSLPVIGRVLGHSQPATTARYAHVAD--KVAAELVEAAGALIGT 381


>gi|239906838|ref|YP_002953579.1| tyrosine recombinase XerD [Desulfovibrio magneticus RS-1]
 gi|239796704|dbj|BAH75693.1| tyrosine recombinase XerD [Desulfovibrio magneticus RS-1]
          Length = 285

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 79/226 (34%), Gaps = 15/226 (6%)

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           + SR     S  + L+++R  F +A  + +++ +P   +E PK         ++E++ + 
Sbjct: 46  LRSRGLASRSLARHLSALRGFFAFAADESWLSASPAALIENPKLPRLLPDVLSREEVTRL 105

Query: 183 K----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-EL 237
                +    G + R   E L  +GLR S+     +         ++    G+   V  +
Sbjct: 106 LDAPDTATPLGYRDRTMLELLYAAGLRVSELVGLTLADFDAQAGLLRVFGKGSKERVTPI 165

Query: 238 PDGFMKLLA--------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAH 287
               M+ L+              +  F+N   + +         K  A  A V    S H
Sbjct: 166 HSLAMEFLSTYLSSIRGAFGPKDQHVFLNRSGKGLTRQAVWKGIKRYALAAQVSTRISPH 225

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
            +R   AT   D GA    +    G   +   E YT       L +
Sbjct: 226 SLRHSFATHLLDGGADLRTVQMLLGHADISATEIYTHVQAGRLLAV 271


>gi|196041298|ref|ZP_03108592.1| integrase/recombinase [Bacillus cereus NVH0597-99]
 gi|196027783|gb|EDX66396.1| integrase/recombinase [Bacillus cereus NVH0597-99]
          Length = 330

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 44/280 (15%), Positives = 103/280 (36%), Gaps = 26/280 (9%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISF----ESYFDQIIRKSGD---FDYRKITTKHIRS- 121
           T    I+ + K     +L   +   +    +++ + +  +  D        +T +H++  
Sbjct: 26  TFDEAITLFVKDCELRNLRPFTIKYYLNELQAFLNLLTEQEIDVSLLRPYNMTEEHVKEN 85

Query: 122 ----GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
                   R     S    L ++R  + +  +Q+++  NP  +++  K +   I  ++KE
Sbjct: 86  VILYMKNYRGIKVVSINTRLRALRAFYNFLYKQKHIPRNPMENIKLLKDRKRIIPTFSKE 145

Query: 178 DMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGT 231
            + +     +     G +       +L +G+R ++     V+ ++  +++  I+  K+  
Sbjct: 146 QLNKLFHQPNLRTFTGVRDYTIMMLMLETGIRVNELVGLSVKDIRWEDSLLVIRNAKSYR 205

Query: 232 IITVEL----PDGFMKLLAMTP-IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--- 283
              V +     +   K +A+   +     F+  D  ++               A +    
Sbjct: 206 ERQVPIQRDMKNQLKKYIAIRGYVESTALFVTVDGTRLTRRGIQQRISIYGNMAQIKDVR 265

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
            S H  R   A +S   GA   EL A  G   ++  +TY 
Sbjct: 266 CSPHTFRHTFAKLSVQQGANIFELQAILGHTNMEIVKTYV 305


>gi|146297327|ref|YP_001181098.1| tyrosine recombinase XerD [Caldicellulosiruptor saccharolyticus DSM
           8903]
 gi|145410903|gb|ABP67907.1| tyrosine recombinase XerD subunit [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 291

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 42/276 (15%), Positives = 100/276 (36%), Gaps = 23/276 (8%)

Query: 74  LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDF-----DYRKITTKHIRSGVESRK 127
           ++  + +        + N+ +S+     + I    +      D  + T       ++   
Sbjct: 3   IVEAFYEHLCQKQRFSQNTVMSYLRDIKKYIEFLNNTGIKIEDTSQATIITYIINMQKSG 62

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            + S+  + + S++V +++      V I   + ++ PK +    +  TK+++++  S   
Sbjct: 63  RSNSTIARAIVSLKVFYEFLKDHNIVDIG-KIEIDPPKLERTPPQILTKDEVEKLLSCPR 121

Query: 188 E----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
           E    G + +   E L  +G+R S+     +  +      I  +       + +    ++
Sbjct: 122 EDDIKGIRDKAMLELLYATGIRVSELISLNLSDINLEHGYIICRNKKRDRIIPIGSYAIE 181

Query: 244 LLA----------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRK 291
            +                +E  F+N +  +M    F    K     AG+NK  + H +R 
Sbjct: 182 AVEKYLNYSRPYLARKKEEEALFLNFNGARMTRQGFWKIVKFYTNVAGINKEITPHILRH 241

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
             AT   + GA    +    G   +   + Y + A+
Sbjct: 242 SFATHLIENGADVRAVQQMLGHADISTTQRYLQVAN 277


>gi|255325630|ref|ZP_05366727.1| tyrosine recombinase XerD [Corynebacterium tuberculostearicum
           SK141]
 gi|255297240|gb|EET76560.1| tyrosine recombinase XerD [Corynebacterium tuberculostearicum
           SK141]
          Length = 296

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 48/268 (17%), Positives = 93/268 (34%), Gaps = 22/268 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGD---FDYRKITTKHIRSGVESRKHTPS--SAIQFLTS 139
             ++ N+  ++     + +   GD    D R +T   + + ++  +   +  SA + L  
Sbjct: 19  RGVSANTLSNYRRDVRRYLAWLGDNGVEDLRSVTRPMVEAYLKDLRSHMAVSSANRALIV 78

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLA 195
            R L K+AV +  V ++  + V  P          + +++          +    + R  
Sbjct: 79  ARGLHKFAVSEGVVDVDVAVEVTPPSTGQHLPETLSVDEVTALIEATPTETPVDVRDRAL 138

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAM------- 247
            E L  +G R S+     V  + +    I+   K      V +     + L         
Sbjct: 139 LEMLYGTGARISEIVSLNVDDVSSAQEVIRLRGKGDKERIVPVGSHARQALDAYLVRARP 198

Query: 248 --TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGAT 303
             +       F+N     ++        K  A +A + KS   H +R   AT   + GA 
Sbjct: 199 ALSKGKTPALFLNTRGGALSRQSAWTVLKTAAQRAQLGKSISPHTLRHSFATHLLEGGAD 258

Query: 304 AHELMATYGWKTVDQAETYTK-GADRIR 330
              +    G  +V   + YT   AD +R
Sbjct: 259 VRTVQELLGHSSVTTTQIYTHVTADSLR 286


>gi|254804633|ref|YP_003082854.1| putative site-specific recombinase/integrase [Neisseria
           meningitidis alpha14]
 gi|254668175|emb|CBA04865.1| putative site-specific recombinase/integrase [Neisseria
           meningitidis alpha14]
          Length = 291

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 46/280 (16%), Positives = 97/280 (34%), Gaps = 21/280 (7%)

Query: 74  LISEYRKSAHWGS--LAVNSRISFESYFDQIIRKSGDFD--YRKITTKHIRSGVESRKHT 129
           LI    ++  W    L+ N+   +    ++I R+        +      + + V      
Sbjct: 5   LIDRLLETL-WLDRRLSQNTLNGYRRDLEKIARRLSQSGRMLKDADEADLAAAVYVDGEQ 63

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---- 185
            SS  + L++ + L+ W  R+     NP   ++ PK         T++ + +  +     
Sbjct: 64  RSSQARALSACKRLYIWMEREGIRTDNPTRLLKPPKIDKNIPTLITEQQISRLLATPDTD 123

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG---- 240
              G + +   E +  +GLR S++       +  +   I    K      V +       
Sbjct: 124 TPHGLRDKALLELMYATGLRVSEAVGLNFGSVDLDRGCITALGKGDKQRMVPMGQESAYW 183

Query: 241 ----FMKLLAMTPIGK--ETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFS 293
               + +       G+  +  F++  K  ++     +  K  A +AG+   S H +R   
Sbjct: 184 VGRYYTEARPALLKGRSCDALFVSQKKTGISRQLAWMIVKEYAGRAGIGHISPHSLRHAF 243

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           AT     G     +    G   ++  + YT  A+    G+
Sbjct: 244 ATHLVQHGLDLRVVQDMLGHADLNTTQIYTHVANVWLQGV 283


>gi|256819226|ref|YP_003140505.1| tyrosine recombinase XerD [Capnocytophaga ochracea DSM 7271]
 gi|315224660|ref|ZP_07866483.1| tyrosine recombinase XerD [Capnocytophaga ochracea F0287]
 gi|256580809|gb|ACU91944.1| tyrosine recombinase XerD [Capnocytophaga ochracea DSM 7271]
 gi|314945288|gb|EFS97314.1| tyrosine recombinase XerD [Capnocytophaga ochracea F0287]
          Length = 303

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 41/265 (15%), Positives = 92/265 (34%), Gaps = 26/265 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDF----DYRKITTKHIRSGVE--SRKHTPSSAIQFLT 138
             L+ N+ +S+    +++I     +        I    +R  V   S++    S  + ++
Sbjct: 17  RGLSQNTVVSYGLDIEKLIGYLEKYNITEPPDTIQVDTLRQFVYEVSKELNARSQARLIS 76

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194
           +++  FK+ + ++     P   ++ PK   +     + +++    +       EG + + 
Sbjct: 77  ALKSFFKFMISEKGREDFPMSLIDSPKIGVKLPDTLSLKEIDAMLASIDLSTDEGHRNKA 136

Query: 195 AFEFLLYSGLRCSDSCRAGVQH--LQNNIFSIKTQKTGTIITVELP-----------DGF 241
             E L   GLR S+     +     + +   +   K      V +            +  
Sbjct: 137 IIETLYGCGLRVSELVSLRLSDLFFEEDFIRVM-GKGSKQRLVPIESYTQKQINNYINNQ 195

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
            K L +    ++  F+N   +++         +  A   G+ K  S H  R   AT   +
Sbjct: 196 RKQLKIAKGHEDYVFLNRRGKQLTRAMIFTIVRQVAENIGLQKTISPHTFRHSFATHLLE 255

Query: 300 AGATAHELMATYGWKTVDQAETYTK 324
            GA    +    G + +   E Y  
Sbjct: 256 NGANLRAIQMMLGHENITTTEIYVH 280


>gi|283834576|ref|ZP_06354317.1| tyrosine recombinase XerC [Citrobacter youngae ATCC 29220]
 gi|291069704|gb|EFE07813.1| tyrosine recombinase XerC [Citrobacter youngae ATCC 29220]
          Length = 300

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 42/259 (16%), Positives = 87/259 (33%), Gaps = 19/259 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRKHTPSSAIQFLT 138
             L+  + ++++   D II  +G+   +          +        +   P+S    L+
Sbjct: 21  RQLSPITLLNYQRQLDAIIALAGETGLQSWQQCDAAMVRSFAVRSRRKGLGPASLALRLS 80

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLA 195
           ++R  F W V Q  +  NP  SV  PK      +    +D+ +            + R  
Sbjct: 81  ALRSFFDWLVNQGELKANPAKSVSAPKAPRHLPKNIDVDDVNRLLDIDLNDPLAVRDRAM 140

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLAMT------ 248
            E +  +GLR S+     ++HL  +        K      + +    +  +         
Sbjct: 141 LEVMYGAGLRLSELVGLDIKHLDLDTGEVWVMGKGSKERRLPIGRNAVAWIEHWLDLRGL 200

Query: 249 -PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAH 305
                +  F++   ++++A      F     K G+N     H +R   AT   ++     
Sbjct: 201 FGGDDDALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVHPHKLRHSFATHMLESSGDLR 260

Query: 306 ELMATYGWKTVDQAETYTK 324
            +    G   +   + YT 
Sbjct: 261 GVQELLGHANLSTTQIYTH 279


>gi|302035718|ref|YP_003796040.1| putative phage integrase [Candidatus Nitrospira defluvii]
 gi|300603782|emb|CBK40114.1| putative Phage integrase [Candidatus Nitrospira defluvii]
          Length = 346

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 56/268 (20%), Positives = 99/268 (36%), Gaps = 12/268 (4%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
            K  T   ++  Y K     + A  SR   E     +    G     +IT K + +    
Sbjct: 44  AKDHTFNDMMDRYLKERS-ITKAPASRQRDEQCLAHLRDAFGPLTLAEITPKLLAAYKAK 102

Query: 126 RKHT--PSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           R+ T  P++  + L  +R  F  A+R+ E+   NP   V     + E  R  + E+  + 
Sbjct: 103 RRETTKPATVNKELGLVRHGFNVAIREWEWCRDNPMQRVCMETVRNERDRWISSEEEGRL 162

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDG 240
            +  +   Q  + F   L +G+R  +      Q +     +  +   K G   TV L   
Sbjct: 163 LANSAPWLQDMIVF--ALNTGMRRGEILNLQWQAVDLIRQVLVVMRSKNGEKRTVPLNGR 220

Query: 241 FMKLLAMTPI---GKETFFINNDKQKMNATQFSIWFKAKATKAG-VNKSAHGVRKFSATI 296
            ++LL             F +     ++A   +  F+  A KA  ++   H +R   AT 
Sbjct: 221 LVELLRRKATMQAKGSFVFSSAASTLVDARNLTRSFRLAAKKAQLIDVRFHDLRHTFATR 280

Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324
            A AG   +++    G K+    + Y  
Sbjct: 281 LAQAGVDLYKVQRLLGHKSAAMTQRYAH 308


>gi|239947404|ref|ZP_04699157.1| integrase [Rickettsia endosymbiont of Ixodes scapularis]
 gi|239921680|gb|EER21704.1| integrase [Rickettsia endosymbiont of Ixodes scapularis]
          Length = 386

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 50/305 (16%), Positives = 105/305 (34%), Gaps = 18/305 (5%)

Query: 52  TGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY 111
            G  P  E     ++   T K     Y     +  +       + +  D+  +   +   
Sbjct: 90  QGYNPIEEKARLSKEP--TFKEFYDRYL--DEYSKINNKRWKDYAASVDRYAKHLYNRKI 145

Query: 112 RKITTKHIRSGVESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170
             I    I+       K     A +FL  +R +F  A+  E + +NP + + + + ++  
Sbjct: 146 STIQKADIQELFNKLTKTGKYGANRFLEILRPVFNKAIEWELIKVNPAIGITKHQEQSR- 204

Query: 171 IRPWTKEDMQQFKSFWSE--GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKT 226
            R  T+E++ QF +  +E      +  F   LY+ +R  +      + +   +    +  
Sbjct: 205 DRYLTREEIPQFFAAIAEEKNEVMKDFFLIALYTSVRKDNLLTMKWEQVSFTDKQLYLPE 264

Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGV-N 283
            K G   ++ L D  +++L        +   F +      +  +    +     KAG+ N
Sbjct: 265 TKNGKPHSLPLLDQALEILKARKENSTSSWVFPSETSGSGHLQEPKKAWSRICEKAGIKN 324

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343
              H +R+   +  A  GA  + +              YT+ A+           +   +
Sbjct: 325 LRIHDLRRTVPSWMAMTGANQYVIGQLLNHMDPRSTAVYTRLAN-----DTAREYMQRAI 379

Query: 344 DSDDP 348
           DS  P
Sbjct: 380 DSMIP 384


>gi|157157271|ref|YP_001461927.1| phage integrase family protein [Escherichia coli E24377A]
 gi|157079301|gb|ABV19009.1| phage integrase family [Escherichia coli E24377A]
          Length = 356

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 61/343 (17%), Positives = 112/343 (32%), Gaps = 25/343 (7%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYM---SALTGSTPKREYINS 63
           LPP +     R+     Y     G+   L          A        +G   K      
Sbjct: 12  LPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQTNIELFSGHKHKPLTARI 68

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
                 TL   +  Y K      +   + I++ S    I R   D     ITTK I + +
Sbjct: 69  NSDNSVTLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAML 128

Query: 124 ESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
                    +SA    +++   F+ A+ + ++  NP  +    K +    R    E ++ 
Sbjct: 129 NGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEYLKI 188

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE----- 236
           +++  S     RLA E  + +G R  D C      + +    ++  KTG  I +      
Sbjct: 189 YQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTALHV 248

Query: 237 ----LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NKSAH 287
               +            +G ET   +  ++ +++   S +F      +G+       + H
Sbjct: 249 DALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPPTFH 308

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
            +R   +    +   +        G K+   A  Y    DR R
Sbjct: 309 ELR-SLSARLYEKQISDKFAQHLLGHKSDTMASQY--RDDRGR 348


>gi|228922585|ref|ZP_04085885.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228837014|gb|EEM82355.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 299

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 43/272 (15%), Positives = 97/272 (35%), Gaps = 26/272 (9%)

Query: 85  GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLT 138
            + +  +  S+++  +  +    + G   +  +T   +R  +      K    S  + ++
Sbjct: 18  RNYSKYTIASYQNDLEHFVQFMEREGISSFLDVTYADVRLYLTTLHDEKLARKSVARKVS 77

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194
           S+R L+++ +R+ Y   NP      PK++    +    E++++           G + + 
Sbjct: 78  SLRSLYRFLIREGYRKDNPFALASLPKKELSIPKFLYAEELEELFEVSDTETPLGQRNQA 137

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE------------LPDGF 241
             E +  +G+R S+     +  +   + +I    K      +             + +G 
Sbjct: 138 LLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQRYIPFGSYAQDSLITYIENGR 197

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
            +L+  T       F+N     + +            KA +    S H +R   AT   D
Sbjct: 198 KQLVNKTDEDSHMVFLNAKGTPLTSRGVRYVLNEIIKKASLTMRISPHMLRHTFATHMLD 257

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            GA    +    G + +   + YT    + RL
Sbjct: 258 EGADLRTVQELLGHENLSTTQIYTH-VSKERL 288


>gi|293372135|ref|ZP_06618526.1| tyrosine recombinase XerC [Bacteroides ovatus SD CMC 3f]
 gi|292632927|gb|EFF51514.1| tyrosine recombinase XerC [Bacteroides ovatus SD CMC 3f]
          Length = 293

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 51/276 (18%), Positives = 102/276 (36%), Gaps = 24/276 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIR----KSGDFDYRKITTKHIRSGV---ES 125
           LI  +     +  + +  + +++     Q+      + G FD  ++  + IR  +     
Sbjct: 2   LIESFLDYLQYERNYSEKTVLAYGEDIKQLQEFAQEEYGKFDPLEVEAELIREWIVSLMD 61

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           + +T +S  + L+S+R  +K+ +RQ    I+P   ++ PK K        + +M +    
Sbjct: 62  KGYTSTSVNRKLSSLRTFYKYLIRQGETTIDPLRKIKGPKNKKPLPVFLKENEMNRLLDD 121

Query: 186 WS-----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPD 239
                  +G + RL  E    +G+R S+      + +  +   +K T K      +   D
Sbjct: 122 TDFGQGFKGCRDRLVIEVFYATGMRLSELIGLDDKDVDFSASLLKVTGKRNKQRLIPFGD 181

Query: 240 GFMKLL--------AMTPIGKETFFINNDKQKMNATQFSIWFKA--KATKAGVNKSAHGV 289
              +L+           P   E FFI  + +++         K           KS H +
Sbjct: 182 ELQELMLEYINVRNETIPERSEAFFIRENGERLYKNLVYNLVKRNLSKVVTLKKKSPHVL 241

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           R   AT   +  A    +    G +++   E YT  
Sbjct: 242 RHTFATTMLNNEAELGAVKELLGHESITTTEIYTHA 277


>gi|167754410|ref|ZP_02426537.1| hypothetical protein ALIPUT_02704 [Alistipes putredinis DSM 17216]
 gi|167659035|gb|EDS03165.1| hypothetical protein ALIPUT_02704 [Alistipes putredinis DSM 17216]
          Length = 379

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 75/224 (33%), Gaps = 13/224 (5%)

Query: 121 SGVESRKHTPSSAIQFLT---SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
              +  K  P S    ++    +R     A     + INP   VE  K +       T E
Sbjct: 154 DERDRIKDHPLSRNSRVSYFNKLRACLNQAYEDRIIPINPMRGVEGFKAEEGTRMYLTIE 213

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTII 233
           ++Q+      E    + AF F   +GLR SD  R     +           K +KT    
Sbjct: 214 EVQRLAQTECEYPAIKRAFLFSCLTGLRRSDVIRLTWGDVHQQGEFTRIIFKQKKTSGQE 273

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRK 291
            +++P    +L+       E  F N               K    +AG++K  + H  R 
Sbjct: 274 YLDIPPQAAELMGERGKDAEHIFPNIHSPSCTNET----IKRWVLRAGIHKDITFHCGRH 329

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335
             A +  D G   + +    G + +   + Y K  D+ +     
Sbjct: 330 TFAVMMLDLGTDIYTVSKLLGHRELSTTQIYAKVLDKNKQAAVA 373


>gi|57234018|ref|YP_181928.1| tyrosine recombinase XerD [Dehalococcoides ethenogenes 195]
 gi|57224466|gb|AAW39523.1| tyrosine recombinase XerD [Dehalococcoides ethenogenes 195]
          Length = 302

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 40/283 (14%), Positives = 96/283 (33%), Gaps = 35/283 (12%)

Query: 85  GSLAVNSRISFESYFDQI-------IRKSGDFD-YRKITTKHIRSGVESRKHT---PSSA 133
              + N+  ++E+   Q+         KSG    +   T + + + +   K      ++ 
Sbjct: 16  KGFSENTTEAYENDLRQMMTFADKEAAKSGKIPGWENFTRQTMLAYMLDLKERNYAITTV 75

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-----SE 188
           ++ + + +  F + V +  +  NP  ++  PK         +   ++   +       SE
Sbjct: 76  VRKMAAAKSFFNFMVAEGKLKENPTENISTPKVGKPLPDAISISQVRALLNQPVKSGSSE 135

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLA- 246
             + +   E L  SG+R ++     V  +      ++   K      + +     + +  
Sbjct: 136 AKRDKAMLELLYASGMRVTELVNLNVLDVDLKEGFVRCFGKGRKERMIPIYPQAAQSIQE 195

Query: 247 ---------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSAT 295
                    +    ++  F+N    ++         K  A +AG++   + H +R   AT
Sbjct: 196 YLTEIRPNLVRAETEKALFLNRRGDRLTRQGLWQILKGYAREAGLDDVVTPHTLRHSFAT 255

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338
                GA    +    G   +   + YT       L  ++ +R
Sbjct: 256 HMLSGGADLRSVQELLGHANISTTQIYTH------LTSEHIKR 292


>gi|254437230|ref|ZP_05050724.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
 gi|198252676|gb|EDY76990.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
          Length = 397

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 50/296 (16%), Positives = 104/296 (35%), Gaps = 22/296 (7%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRSGVE 124
           ++ +T+  L   + +         ++   ++   +  I+   G F    +  K I +   
Sbjct: 94  RRASTVGALCDRFLEVHVLERCKPSTAAEYKRGLNIFIKPALGAFKVVDVKRKDIAAIHH 153

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI--NPCLSVERPK-RKTEGIRPWTKEDMQQ 181
             K TP  A + L  +  +F  A          NPC  V + +  K E     ++ ++Q+
Sbjct: 154 KMKETPYQANRVLGVLSKMFNLAEVWGLRPDGSNPCRHVPKYRELKREAF--LSQSELQR 211

Query: 182 FKSFW-------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234
             +         SE      AF  L+ +G R  +      ++L      +   KTG    
Sbjct: 212 LGATLAACELDGSESPYIVAAFRLLILTGCRLGEIQTLKWEYLTAKRMELPDTKTGAR-R 270

Query: 235 VELPDGFMKLLAMTP--IGKETFFINN-DKQKMNATQFSIWFKAKATKAGVNKS-AHGVR 290
           + LP     +LA  P  +G         + + +        ++    +AG+  +  H +R
Sbjct: 271 IPLPKAARDVLAALPRVVGNPYVVCGAVEGRHIT--DLQHPWRRVRERAGLPHTRIHDLR 328

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGAD--RIRLGIKNSRRISSVVD 344
              A+ +  +G     +    G   +     Y   AD   ++   +N+  + S + 
Sbjct: 329 HTYASNAVSSGMPIQMVGKLLGHTQIQTTMRYAHLADDPVLKAAEENASSLQSALG 384


>gi|189219127|ref|YP_001939768.1| Site-specific recombinase XerD [Methylacidiphilum infernorum V4]
 gi|189185985|gb|ACD83170.1| Site-specific recombinase XerD [Methylacidiphilum infernorum V4]
          Length = 315

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 48/272 (17%), Positives = 96/272 (35%), Gaps = 23/272 (8%)

Query: 88  AVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVE---SRKHTPSSAIQFLTSMRV 142
           A+N+++ +    ++ +    S       + + HI   ++    R  + SS    + ++R 
Sbjct: 28  AINTQLLYRQILEKFLDWVLSHKLSIGSVRSSHIELFLDEERKRGLSDSSIKITIIALRH 87

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFEF 198
           LF++   Q  +  NP    E P  ++   +  T +++++           G + +   E 
Sbjct: 88  LFEYLKEQNKIKTNPLDHKELPSIQSRLPQFLTTKEIEKLLQAPFPDTPLGWRDKAILEL 147

Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKET--- 254
           L  SGLR S+     ++      F IK   K      V +     + L        T   
Sbjct: 148 LYSSGLRVSELISLKLESYYPEHFQIKVLGKGNKERAVPIGKCAKEALDKYIAEGRTKLL 207

Query: 255 -------FFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAH 305
                   F+N   Q +  ++        A   G++K    H +R   A+   + GA   
Sbjct: 208 AKKTRGEVFLNQRGQPLTRSRIRQLIIHYARLGGIDKKVYPHLLRHTFASHLVENGADLR 267

Query: 306 ELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
            +    G   +   + YT   +   L   + R
Sbjct: 268 VIQELLGHANIATTQIYTH-VNLKHLKEIHRR 298


>gi|59800775|ref|YP_207487.1| hypothetical protein NGO0329 [Neisseria gonorrhoeae FA 1090]
 gi|194098059|ref|YP_002001107.1| XerD [Neisseria gonorrhoeae NCCP11945]
 gi|239998519|ref|ZP_04718443.1| XerD [Neisseria gonorrhoeae 35/02]
 gi|240013644|ref|ZP_04720557.1| XerD [Neisseria gonorrhoeae DGI18]
 gi|240016083|ref|ZP_04722623.1| XerD [Neisseria gonorrhoeae FA6140]
 gi|240117462|ref|ZP_04731524.1| XerD [Neisseria gonorrhoeae PID1]
 gi|240120714|ref|ZP_04733676.1| XerD [Neisseria gonorrhoeae PID24-1]
 gi|240123018|ref|ZP_04735974.1| XerD [Neisseria gonorrhoeae PID332]
 gi|240125270|ref|ZP_04738156.1| XerD [Neisseria gonorrhoeae SK-92-679]
 gi|240127724|ref|ZP_04740385.1| XerD [Neisseria gonorrhoeae SK-93-1035]
 gi|268594379|ref|ZP_06128546.1| tyrosine recombinase xerD [Neisseria gonorrhoeae 35/02]
 gi|268603162|ref|ZP_06137329.1| tyrosine recombinase xerD [Neisseria gonorrhoeae PID1]
 gi|268681643|ref|ZP_06148505.1| tyrosine recombinase xerD [Neisseria gonorrhoeae PID332]
 gi|268683870|ref|ZP_06150732.1| tyrosine recombinase xerD [Neisseria gonorrhoeae SK-92-679]
 gi|268686113|ref|ZP_06152975.1| tyrosine recombinase xerD [Neisseria gonorrhoeae SK-93-1035]
 gi|293399522|ref|ZP_06643675.1| tyrosine recombinase XerD [Neisseria gonorrhoeae F62]
 gi|59717670|gb|AAW89075.1| putative integrase/recombinase [Neisseria gonorrhoeae FA 1090]
 gi|193933349|gb|ACF29173.1| XerD [Neisseria gonorrhoeae NCCP11945]
 gi|268547768|gb|EEZ43186.1| tyrosine recombinase xerD [Neisseria gonorrhoeae 35/02]
 gi|268587293|gb|EEZ51969.1| tyrosine recombinase xerD [Neisseria gonorrhoeae PID1]
 gi|268621927|gb|EEZ54327.1| tyrosine recombinase xerD [Neisseria gonorrhoeae PID332]
 gi|268624154|gb|EEZ56554.1| tyrosine recombinase xerD [Neisseria gonorrhoeae SK-92-679]
 gi|268626397|gb|EEZ58797.1| tyrosine recombinase xerD [Neisseria gonorrhoeae SK-93-1035]
 gi|291610091|gb|EFF39213.1| tyrosine recombinase XerD [Neisseria gonorrhoeae F62]
 gi|317163795|gb|ADV07336.1| hypothetical protein NGTW08_0364 [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 291

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 45/263 (17%), Positives = 93/263 (35%), Gaps = 18/263 (6%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRV 142
             L+ N+  S+    ++I R+        +      + + V       SS  + L++ + 
Sbjct: 17  RRLSRNTLDSYRRDLEKIARRLSLCGRTLKDADEADLAAAVYVDGEQRSSQARALSACKR 76

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFEF 198
           L+ W  R+   A NP   ++ PK         T++ + +  +        G + +   E 
Sbjct: 77  LYVWMEREGMRADNPTRLLKPPKIDRNIPTLITEQQISRLLAAPDTDTPHGLRDKALLEL 136

Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG----------FMKLLAM 247
           +  +GLR S++      ++  +   I T  K      V +               + L +
Sbjct: 137 MYATGLRVSEAVGLNFGNVDLDRGCITTLGKGDKQRMVPMGQESAYWVERYYTEARPLLL 196

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHE 306
                +  F++  K  ++     +  K  A +AG+   S H +R   AT     G     
Sbjct: 197 KGRSCDALFVSQKKTGISRQLAWMIVKEYAGRAGIGHISPHSLRHAFATHLVRHGLDLRV 256

Query: 307 LMATYGWKTVDQAETYTKGADRI 329
           +    G   ++  + YT  A+  
Sbjct: 257 VQDMLGHADLNTTQIYTHVANVR 279


>gi|311739368|ref|ZP_07713203.1| tyrosine recombinase XerD [Corynebacterium pseudogenitalium ATCC
           33035]
 gi|311305184|gb|EFQ81252.1| tyrosine recombinase XerD [Corynebacterium pseudogenitalium ATCC
           33035]
          Length = 296

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 50/260 (19%), Positives = 91/260 (35%), Gaps = 20/260 (7%)

Query: 90  NSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS--SAIQFLTSMRVLFKWA 147
           N R     Y   +    G  D R +T   + + ++  +   +  SA + L   R L K+A
Sbjct: 28  NYRRDVRRYLSWLGDN-GVEDLRSVTRPMVEAYLKDLRSHMAVSSANRALIVARGLHKFA 86

Query: 148 VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSG 203
           V +  V ++  + V  P    +     + +++          +    + R   E L  +G
Sbjct: 87  VSEGVVDVDVAVEVTPPSTGQQLPETLSVDEVTALIEATPTETPVDVRDRALLEMLYGTG 146

Query: 204 LRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLLAMTPIGK-E 253
            R S+     V  + +    I+ +  G    +          L    ++       GK  
Sbjct: 147 ARISEIVSLNVDDVSSAQEVIRLRGKGDKERIVPVGSHARQALDAYLVRARPALSKGKTP 206

Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATY 311
             F+N     ++        K  A +A + KS   H +R   AT   + GA    +    
Sbjct: 207 ALFLNTRGGALSRQSAWTVLKTAAQRAQLGKSISPHTLRHSFATHLLEGGADVRTVQELL 266

Query: 312 GWKTVDQAETYTK-GADRIR 330
           G  +V   + YT   AD +R
Sbjct: 267 GHSSVTTTQIYTHVTADSLR 286


>gi|157827404|ref|YP_001496468.1| integrase [Rickettsia bellii OSU 85-389]
 gi|157802708|gb|ABV79431.1| Integrase [Rickettsia bellii OSU 85-389]
          Length = 381

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 47/283 (16%), Positives = 102/283 (36%), Gaps = 13/283 (4%)

Query: 52  TGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY 111
            G  P  E     ++   T K     Y     +  +       + +  D+  +   +   
Sbjct: 83  QGYNPIEEKARLSKEP--TFKEFYDRYL--DEYSKINNKRWKDYAASVDRYAKHLYNRKI 138

Query: 112 RKITTKHIRSGVESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170
             I    I+       K     A +FL  +  +F  A+  E + +NP + +++ K ++  
Sbjct: 139 STIQKADIQELFNKLTKTGKYGANRFLEVLSPVFSKAIEWELLTVNPVIGIKKHKEQSR- 197

Query: 171 IRPWTKEDMQQFKSFWSE--GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKT 226
            R  T+E++ +F +  SE      +  F   LY+ +R  +      + +   +    +  
Sbjct: 198 DRYLTREEIPRFFTAISEEQNQVMKDFFLIALYTSVRKDNVLTMRWEQISFADKQLYLPD 257

Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN--ATQFSIWFKAKATKAGV-N 283
            K G    + L D  +++L       ++ ++   +   +    +    +K    KAG+ N
Sbjct: 258 TKNGDPHRLPLLDQAVEILKARKEQSDSIWVFPSETSSSGHLQEPKKAWKRICKKAGIEN 317

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
              H +R+   +  A  GA  + +      +       YT+ A
Sbjct: 318 LRIHDLRRTIPSWMAMTGANQYVIGQLLNHRDPRSTAVYTRLA 360


>gi|282892593|ref|ZP_06300866.1| hypothetical protein pah_c272o032 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281497717|gb|EFB40086.1| hypothetical protein pah_c272o032 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 369

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 51/277 (18%), Positives = 96/277 (34%), Gaps = 19/277 (6%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT-------TKHIRSG 122
           TL  LI  Y               + + + D    K G +   KI+        + +  G
Sbjct: 68  TLIDLIDRYETII--LPTKPKDARNMKRHLDWWRNKIGKYGLTKISSDLIAQCRQELAEG 125

Query: 123 VESRKHTPSSA--IQFLTSMRVLFKWAV-RQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
           V S+K   S A   ++L ++  +F + +    ++  NPC  V +        R   + + 
Sbjct: 126 VTSKKTKRSHATVNRYLATLSTVFTYGINECGWITDNPCRRVSKFTESKGRDRIVAENEF 185

Query: 180 QQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITV 235
            +            L       + +G+R  +         +L      +K  K G   TV
Sbjct: 186 TRLFEECKNSRNEHLLPVVVLAVTTGMRRGEILGLTWDCINLDRQTIILKETKNGKQRTV 245

Query: 236 ELPDGFMKLLAM--TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKF 292
            +    ++LL          T ++   K++         +     +AG+ N   H +R  
Sbjct: 246 SIVGEALELLRSHYQKRNPNTPYVFPAKKRFGKICIRKAWDEALKRAGIQNLRIHDLRHT 305

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             T +++ GA+  EL A  G +T+     YT    + 
Sbjct: 306 FCTYASETGASILELAAAMGHQTLQMVNRYTHMNQKK 342


>gi|161521411|ref|YP_001584838.1| integrase family protein [Burkholderia multivorans ATCC 17616]
 gi|160345461|gb|ABX18546.1| integrase family protein [Burkholderia multivorans ATCC 17616]
          Length = 368

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 60/373 (16%), Positives = 113/373 (30%), Gaps = 56/373 (15%)

Query: 1   MTPSLRLPPFVTKERTRHGKIIYYFRKGHGR----RIRLPYPHESTFIPAYMSALTGSTP 56
           M    R P F+           ++  K        R+R         +  Y  A      
Sbjct: 1   MIGRRRSPSFLPARVYEKHGSWWFVDKNRKWHKLCRVRDGIVRLYESLAEYTRA------ 54

Query: 57  KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF-DYRKIT 115
                +S      T+  LI ++ +     + A  +R ++      I ++ G       + 
Sbjct: 55  ----SDSAAALDNTMPALIDDWMR-KKLPAYAPKTRANYVKMIGLIRKEFGPQWLIEDVR 109

Query: 116 TKHIRSGVES-RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
              +   ++      PSS+ +    + ++F  AVR+     NP   V   K + +  R  
Sbjct: 110 PADVARFLDKHFHDKPSSSNKHKALLSLIFMHAVRRGLCDGNPAREVGAAK-ERKRDRYI 168

Query: 175 TKEDMQQFKSFWSEG-----SQPRLAF---EFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226
           T +++   ++    G     S  R      +    +  R  D      Q++ +   S   
Sbjct: 169 TDDELDAVRAAIVAGADYKTSSARSILCLVDLAYQTAQRIGDLLALNWQNVSDEGISFHP 228

Query: 227 QKT----GTIITVELPDGFMKLLAMTPIGKET----FFINNDKQKMNATQFSIWFKAKAT 278
            KT    G  + +E+     + L     GK T        +   +         +K    
Sbjct: 229 SKTVNSSGVRLLIEMTPDLRETLDRARGGKVTAIGPVICTHTGGRFTYIGAYSAWKRACE 288

Query: 279 KA-----------GV--------NKSAHGVRKFSATIS-ADAGATAHELMATYGWKTVDQ 318
           +A           G+            H +R  + T      GA A +  +  G  T   
Sbjct: 289 RARSTYEKECAKKGIEPNPLYLTGMHFHDLRAKALTDLKRQRGAAAAQ--SLAGHTTESM 346

Query: 319 AETYTKGADRIRL 331
              YTK  +  R+
Sbjct: 347 TAHYTKAREVERV 359


>gi|204930199|ref|ZP_03221176.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|204320603|gb|EDZ05805.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|322613026|gb|EFY09977.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322617386|gb|EFY14286.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322625622|gb|EFY22444.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322627045|gb|EFY23838.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322631239|gb|EFY28002.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322638272|gb|EFY34971.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322642792|gb|EFY39379.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322646966|gb|EFY43468.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322650353|gb|EFY46766.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322656356|gb|EFY52650.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322657581|gb|EFY53851.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322665992|gb|EFY62173.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322666731|gb|EFY62908.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322671026|gb|EFY67156.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322679267|gb|EFY75319.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322681671|gb|EFY77698.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322686002|gb|EFY81990.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323192628|gb|EFZ77856.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323196494|gb|EFZ81644.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323203754|gb|EFZ88775.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323205371|gb|EFZ90345.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323210740|gb|EFZ95616.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323215908|gb|EGA00641.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323221401|gb|EGA05819.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323227581|gb|EGA11737.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323231766|gb|EGA15877.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323236181|gb|EGA20258.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323239582|gb|EGA23630.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323244322|gb|EGA28330.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323249581|gb|EGA33493.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323250327|gb|EGA34213.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323256534|gb|EGA40265.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323259768|gb|EGA43401.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323265176|gb|EGA48674.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323268395|gb|EGA51867.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 300

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 43/259 (16%), Positives = 89/259 (34%), Gaps = 19/259 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRKHTPSSAIQFLT 138
             L+  +  +++   D II  +G+   +          +        +    +S    L+
Sbjct: 21  RQLSPITLQNYQRQLDAIIALAGETGLKSWQQCDAAIVRSFAVRSRRKGLGSASLALRLS 80

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLA 195
           ++R  F W V Q  +  NP   V  PK      +    +D+ +            + R  
Sbjct: 81  ALRSFFDWLVSQGELKANPAKGVSAPKAPRHLPKNIDVDDVNRLLDIDLNDPLAVRDRAM 140

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT--------VELPDGFMKLLAM 247
            E +  +GLR S+     ++HL  +   +     G+           V   + ++ L  +
Sbjct: 141 LEVMYGAGLRLSELVGLDIKHLDLDTGEVWVMGKGSKERRLPIGRNAVTWIEHWLDLRGL 200

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAH 305
               +E  F++   ++++A      F     K G+N     H +R   AT   ++     
Sbjct: 201 FASDEEALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVHPHKLRHSFATHMLESSGDLR 260

Query: 306 ELMATYGWKTVDQAETYTK 324
            +    G   +   + YT 
Sbjct: 261 GVQELLGHANLSTTQIYTH 279


>gi|325962900|ref|YP_004240806.1| tyrosine recombinase XerD [Arthrobacter phenanthrenivorans Sphe3]
 gi|323468987|gb|ADX72672.1| tyrosine recombinase XerD [Arthrobacter phenanthrenivorans Sphe3]
          Length = 334

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 56/284 (19%), Positives = 97/284 (34%), Gaps = 35/284 (12%)

Query: 75  ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHT- 129
           I++Y +       LA N+  ++     +  R     G    + IT  H+   V +     
Sbjct: 31  ITDYLQHMGVERGLAANTLSAYRRDLARYSRYLAAQGCSSPQDITRHHVTGYVRALSDGS 90

Query: 130 -------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
                    SA + + ++R L K+   + Y   +P   V  P       +  + +++ + 
Sbjct: 91  DGGSALGVRSAARTVVAVRGLHKFWALEGYTPADPASEVHPPMPGKRLPKAISVDEVTRI 150

Query: 183 KSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT------QKTGTI 232
                   + G + R   EFL  +G R S++    V  +  +             K    
Sbjct: 151 LEAAGTDTATGLRDRALLEFLYSTGARISEAVGLDVDDISLDTGESGPAIVRLFGKGSKE 210

Query: 233 ITVEL-------PDGF----MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281
             V L        D +      LLA    G    F+N    +++        KA A KA 
Sbjct: 211 RLVPLGSYGARALDAYLVRGRPLLAAKGKGTPALFLNARGGRISRQSAWTILKAAAGKAQ 270

Query: 282 VNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           + K  S H +R   AT   + GA    +    G  +V   + YT
Sbjct: 271 ITKDVSPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQVYT 314


>gi|85059013|ref|YP_454715.1| putative phage integrase [Sodalis glossinidius str. 'morsitans']
 gi|84779533|dbj|BAE74310.1| putative phage integrase [Sodalis glossinidius str. 'morsitans']
          Length = 311

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 41/233 (17%), Positives = 85/233 (36%), Gaps = 16/233 (6%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK-H 128
           T   L + +  SA++  L   ++  +  +  +++   G      I  +H+R+ ++ R   
Sbjct: 64  TFAQLWTYFLDSAYFSELKPRTQKDYLQHQKKLLAVFGKVSVNSIKPEHVRTFMDKRGLQ 123

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           + + A   + SM  +++W   + YV  NPC  V + K      R  T ++         +
Sbjct: 124 SKTQANYEMESMSRVYRWGYERGYVKSNPCAGVMKFKAVKR-DRYITDDEYLAIYQAADK 182

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---TIITVELPDGFMKLL 245
               + A E       R SD      Q +      I+ ++TG     +        ++L 
Sbjct: 183 --VVKAAMEIAYLCAARLSDVLDMKWQQVTEKGIFIQQRETGIKQIKVWTPRLREAIELA 240

Query: 246 AMTPIGKET---FFINNDKQKMNATQFSIWFKAKATKAG------VNKSAHGV 289
                 K+T     +   K   +   FS  +    +KA       ++ + H +
Sbjct: 241 RSVFTSKQTDTPVIMGQHKGHYSKRGFSNRWMEARSKASGQLGYELDFTLHDL 293


>gi|224370397|ref|YP_002604561.1| tyrosine recombinase XerD [Desulfobacterium autotrophicum HRM2]
 gi|223693114|gb|ACN16397.1| tyrosine recombinase XerD [Desulfobacterium autotrophicum HRM2]
          Length = 295

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 47/291 (16%), Positives = 87/291 (29%), Gaps = 27/291 (9%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV------E 124
             LI  Y         LA NS  S+                  +        +      E
Sbjct: 2   DRLIDRYMAHLTLERGLAQNSLTSYAMDLATFADFLETNQISALDQVDTVVILAWLVHLE 61

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
           ++  +P S  + L ++R  +++   +     NP   ++ PK  T   R  +++ +     
Sbjct: 62  AKGLSPRSRARHLIAVRGFYRFLALENLTRSNPLRLIDIPKAGTRLPRFLSQDQVTALLE 121

Query: 185 FWSEGSQPRL----AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV----- 235
                +   L      E L  +GLR S+      + +      ++    G+   +     
Sbjct: 122 MPDRTTHRGLRNAAMLEILYGAGLRVSELVGLKTEQVDLVACFVRLFGKGSRERIVPFGS 181

Query: 236 -------ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286
                  E  +     + +        F+      M    F    K  A  AG+    S 
Sbjct: 182 HARQRTMEWLEWGRPWM-LKKNASRYLFVARAGNPMTRQGFWKLLKKYALGAGISIKVSP 240

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
           H +R   AT   + GA    +    G   +   + YT    R  L   + +
Sbjct: 241 HTLRHSFATHLLEGGADLRSVQTMLGHADIASTQIYTH-VSRQYLVDMHKK 290


>gi|163736786|ref|ZP_02144204.1| hypothetical protein RGBS107_01548 [Phaeobacter gallaeciensis
           BS107]
 gi|161389390|gb|EDQ13741.1| hypothetical protein RGBS107_01548 [Phaeobacter gallaeciensis
           BS107]
          Length = 157

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 32/129 (24%), Positives = 56/129 (43%), Gaps = 4/129 (3%)

Query: 212 AGVQHLQNNIFSIKTQKTGTIITVELP--DGFMKLLAMTPIGKETFFINNDKQKMNATQF 269
            G  +++ ++   +  KTG    + L      +  +   P     F  +++ +      F
Sbjct: 1   MGRHNIKGDVIYYRRGKTGQDTELPLAYMPNLVAEIVQLPPDASVFLTHSNGKTYTVESF 60

Query: 270 SIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
             WF+ +   AG+  N  AHG+RK  AT  A+AGA   ++MA    K+  +A  Y + A 
Sbjct: 61  GNWFRDQCVAAGLPDNCRAHGLRKHGATELAEAGANEFQIMAFLAHKSTHEALRYVRAAQ 120

Query: 328 RIRLGIKNS 336
           R +L     
Sbjct: 121 RKKLASDAL 129


>gi|240080225|ref|ZP_04724768.1| XerD [Neisseria gonorrhoeae FA19]
 gi|240112438|ref|ZP_04726928.1| XerD [Neisseria gonorrhoeae MS11]
 gi|240115178|ref|ZP_04729240.1| XerD [Neisseria gonorrhoeae PID18]
 gi|254493240|ref|ZP_05106411.1| tyrosine recombinase xerD [Neisseria gonorrhoeae 1291]
 gi|260441004|ref|ZP_05794820.1| XerD [Neisseria gonorrhoeae DGI2]
 gi|268596375|ref|ZP_06130542.1| tyrosine recombinase xerD [Neisseria gonorrhoeae FA19]
 gi|268598504|ref|ZP_06132671.1| tyrosine recombinase xerD [Neisseria gonorrhoeae MS11]
 gi|268600856|ref|ZP_06135023.1| tyrosine recombinase xerD [Neisseria gonorrhoeae PID18]
 gi|291044335|ref|ZP_06570044.1| tyrosine recombinase xerD [Neisseria gonorrhoeae DGI2]
 gi|226512280|gb|EEH61625.1| tyrosine recombinase xerD [Neisseria gonorrhoeae 1291]
 gi|268550163|gb|EEZ45182.1| tyrosine recombinase xerD [Neisseria gonorrhoeae FA19]
 gi|268582635|gb|EEZ47311.1| tyrosine recombinase xerD [Neisseria gonorrhoeae MS11]
 gi|268584987|gb|EEZ49663.1| tyrosine recombinase xerD [Neisseria gonorrhoeae PID18]
 gi|291011229|gb|EFE03225.1| tyrosine recombinase xerD [Neisseria gonorrhoeae DGI2]
          Length = 291

 Score =  127 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 44/263 (16%), Positives = 92/263 (34%), Gaps = 18/263 (6%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRV 142
             L+ N+  S+    ++I R+        +      + + V        S  + L++ + 
Sbjct: 17  RRLSRNTLDSYRRDLEKIARRLSLCGRTLKDADEADLAAAVYVDGEQRGSQARALSACKR 76

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFEF 198
           L+ W  R+   A NP   ++ PK         T++ + +  +        G + +   E 
Sbjct: 77  LYVWMEREGMRADNPTRLLKPPKIDRNIPTLITEQQISRLLAAPDTDTPHGLRDKALLEL 136

Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG----------FMKLLAM 247
           +  +GLR S++      ++  +   I T  K      V +               + L +
Sbjct: 137 MYATGLRVSEAVGLNFGNVDLDRGCITTLGKGDKQRMVPMGQESAYWVERYYTEARPLLL 196

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHE 306
                +  F++  K  ++     +  K  A +AG+   S H +R   AT     G     
Sbjct: 197 KGRSCDALFVSQKKTGISRQLAWMIVKEYAGRAGIGHISPHSLRHAFATHLVRHGLDLRV 256

Query: 307 LMATYGWKTVDQAETYTKGADRI 329
           +    G   ++  + YT  A+  
Sbjct: 257 VQDMLGHADLNTTQIYTHVANVR 279


>gi|297571450|ref|YP_003697224.1| tyrosine recombinase XerD [Arcanobacterium haemolyticum DSM 20595]
 gi|296931797|gb|ADH92605.1| tyrosine recombinase XerD [Arcanobacterium haemolyticum DSM 20595]
          Length = 310

 Score =  127 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 49/286 (17%), Positives = 97/286 (33%), Gaps = 30/286 (10%)

Query: 69  TTLKWLISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYR---KITTKHIRSGVE 124
                 + +Y        SL+ N+  ++                     I+ +   S VE
Sbjct: 5   GEFDRALRDYVAHLGIERSLSDNTLGAYRRDLTHYKEHLELRSVASLAAISPEDAASFVE 64

Query: 125 SRKHTPS-------SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
             +   +       S  + +T++R   ++ + +     +    +  PK      +  T  
Sbjct: 65  YLRDGSAGSVMATSSVARMVTAVRRFHEFLLAEGITTTDASADLHPPKIGMRLPKAITIP 124

Query: 178 DMQQFKSFWSEG-----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
           +M+Q  +  + G     ++ R   E L  +G R S+     V  +     +I+    G  
Sbjct: 125 EMEQLLAVVARGDDAISTRDRALLEILYGTGARISEVVGLTVDDMSCENATIRLFGKGRK 184

Query: 233 ITV-------------ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK 279
             +              L  G  +L+A +     +FF+N   + ++        +A A +
Sbjct: 185 ERILPLGTYAIEAIRAYLNHGRTELVARSAAPTSSFFLNKRGKTLSRQSAWGVIQAVAEE 244

Query: 280 AGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           AG+ + S H  R   AT     GA    +    G  +V   + YTK
Sbjct: 245 AGLTDISPHTFRHSFATHLLQGGADVRVVQEMLGHSSVTTTQIYTK 290


>gi|146313613|ref|YP_001178687.1| site-specific tyrosine recombinase XerC [Enterobacter sp. 638]
 gi|145320489|gb|ABP62636.1| tyrosine recombinase XerC subunit [Enterobacter sp. 638]
          Length = 300

 Score =  127 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 41/259 (15%), Positives = 88/259 (33%), Gaps = 19/259 (7%)

Query: 85  GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLT 138
             L+  + ++++   D I     + G   +       +R+ V     +   P+S    L+
Sbjct: 21  RQLSPITLLNYQRQLDAIMQLAEEIGLKSWPLCDAATVRALVVRSRRKGLGPASLALRLS 80

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLA 195
           ++R  F W V Q  +  NP   +  PK      +    +D+ +  +         + R  
Sbjct: 81  ALRSFFDWLVSQGELNANPAKGISTPKAPRHLPKNIDVDDVNRLLNIDLNDPLAVRDRAM 140

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLAMT------ 248
            E +  +GLR S+     ++HL  +        K      + +    +  +         
Sbjct: 141 LEVMYGAGLRLSELVNLDLKHLDLDTGEVWVMGKGSKERRLPIGRNAVAWIEHWLDLRGL 200

Query: 249 -PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAH 305
               +   F++   ++++A      F     K G+N     H +R   AT   ++     
Sbjct: 201 FGAEENALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVHPHKLRHSFATHMLESSGDLR 260

Query: 306 ELMATYGWKTVDQAETYTK 324
            +    G   +   + YT 
Sbjct: 261 GVQELLGHANLSTTQIYTH 279


>gi|300024678|ref|YP_003757289.1| tyrosine recombinase XerD [Hyphomicrobium denitrificans ATCC 51888]
 gi|299526499|gb|ADJ24968.1| tyrosine recombinase XerD [Hyphomicrobium denitrificans ATCC 51888]
          Length = 309

 Score =  127 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 46/280 (16%), Positives = 98/280 (35%), Gaps = 30/280 (10%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKI-----TTKHIRSGVESRKHTPSSAIQFLTS 139
              + N+  ++    +  +    D     +       +   + + +    P+S  + L++
Sbjct: 22  RGASPNTIEAYRGDLEGFLDYLSDGSVAPLSVGTQNIQGYIAAMANAGQAPTSRSRRLSA 81

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS---FWSEGSQPRLAF 196
           ++  +++   +  +  +P   ++ PK++    +  +  ++ +         EG + R  F
Sbjct: 82  IKQYYRFLFAEGLIGADPTSGLQGPKKQRSLPKVLSIAEVDRLLDASQKRCEGVEGRAMF 141

Query: 197 ---------EFLLYSGLRCSDSCRAGVQHLQNN--IFSIKTQKTGTIITVELPDGFMKLL 245
                    E L  +G+R S+        L+ +  +FSIK  K G    V L       L
Sbjct: 142 RALRFHCLLELLYATGMRVSELVGLPRTVLRGDKRVFSIK-GKGGRERLVPLNAEARAAL 200

Query: 246 AM----TPIGKETFFINNDK---QKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSAT 295
                 +     + ++   K     M   +F+   K  A +AG+     S H +R   A+
Sbjct: 201 DRFLEVSGRFDNSPWLFPSKSASGHMTRQRFAQDLKDVAAEAGIGGDRISPHVLRHAFAS 260

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335
              D GA    +    G   +   E YT         + N
Sbjct: 261 HLLDRGADLRTVQQLLGHADISTTEIYTHVLQERLKALVN 300


>gi|228992559|ref|ZP_04152486.1| Tyrosine recombinase xerC [Bacillus pseudomycoides DSM 12442]
 gi|228767193|gb|EEM15829.1| Tyrosine recombinase xerC [Bacillus pseudomycoides DSM 12442]
          Length = 302

 Score =  127 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 43/272 (15%), Positives = 97/272 (35%), Gaps = 26/272 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGD------FDYRKITTKHIRSGVESRKHTPSSAIQFLT 138
            + +  +  S+++  +  ++           D   +  +   + +   K    S  + ++
Sbjct: 21  RNYSKYTIASYQNDLEHFVQFMEREGISSFLDVTYVDVRLYLTTLHDEKLARKSVARKVS 80

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194
           S+R L+++ +R+ Y   NP      PK++    +    E++++           G + + 
Sbjct: 81  SLRSLYRFLMREGYREDNPFALASLPKKELSIPKFLYVEELEKLFEVSDVKTPLGQRDQA 140

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVE------------LPDGF 241
             E +  +G+R S+     +  +  ++ +I  T K      V             + +G 
Sbjct: 141 LLELMYATGIRVSECVSLQLTDIDFSVGTILVTGKGKKQRYVPFGSYAQDALITYIENGR 200

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
            +L   T    +  F+N   + +              KA +    S H +R   AT   D
Sbjct: 201 KQLAKKTEEHSQMVFLNAKGKPLTDRGVRYILNELIKKASLTMRISPHMLRHTFATHMLD 260

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            GA    +    G + +   + YT    + RL
Sbjct: 261 EGADLRTVQELLGHENLSTTQIYTH-VSKERL 291


>gi|213963184|ref|ZP_03391442.1| tyrosine recombinase XerD [Capnocytophaga sputigena Capno]
 gi|213954268|gb|EEB65592.1| tyrosine recombinase XerD [Capnocytophaga sputigena Capno]
          Length = 303

 Score =  127 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 41/265 (15%), Positives = 92/265 (34%), Gaps = 26/265 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRK----ITTKHIRSGVE--SRKHTPSSAIQFLT 138
             L+ N+ +S+    +++I     ++  +    I    +R  V   ++     S  + ++
Sbjct: 17  RGLSQNTAVSYGLDIEKLICYLEKYNITETPNNIEEDTLRQFVYEVAKDLNARSQARLIS 76

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194
           +++  FK+ + ++     P   +E PK   +     + +++    +       EG + + 
Sbjct: 77  ALKSFFKFMMYEKGREDFPMSLIESPKIGVKLPDTLSLQEIDAMLASIDLSTDEGHRNKA 136

Query: 195 AFEFLLYSGLRCSDSCRAGVQH--LQNNIFSIKTQKTGTIITVELP-----------DGF 241
             E L   GLR S+     +       +   +   K      V +            D  
Sbjct: 137 MIEMLYACGLRVSELISLRLSDLFFDEDFIRVM-GKGSKQRLVPIEAYTQKQVKQYIDNQ 195

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
            + L +    ++  F+N   +++         +  A   G+ K  S H  R   AT   +
Sbjct: 196 RRQLKIAKGHEDFVFLNRRGKQLTRAMIFTIVRQVAENIGLQKTISPHTFRHSFATHLLE 255

Query: 300 AGATAHELMATYGWKTVDQAETYTK 324
            GA    +    G + +   E Y  
Sbjct: 256 NGANLRAIQMMLGHENITTTEIYVH 280


>gi|116670082|ref|YP_831015.1| tyrosine recombinase XerD [Arthrobacter sp. FB24]
 gi|116610191|gb|ABK02915.1| tyrosine recombinase XerD [Arthrobacter sp. FB24]
          Length = 346

 Score =  127 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 56/307 (18%), Positives = 101/307 (32%), Gaps = 38/307 (12%)

Query: 52  TGSTPKREYINSPRKKPTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS---G 107
               P+ E    PR     +   +++Y +       LA N+  ++     +        G
Sbjct: 23  RAGQPQGEGSARPRNA---IDRAVNDYLQHMGVERGLAANTLSAYRRDLARYANYLAACG 79

Query: 108 DFDYRKITTKHIRSGVESRKHT--------PSSAIQFLTSMRVLFKWAVRQEYVAINPCL 159
                 +T +H+   V++              SA + + ++R L K+   +     +P  
Sbjct: 80  PSRPGDVTRRHVTGFVQALSDGSDGGTALGVRSAARTVVAVRGLHKFWALEGITTADPAS 139

Query: 160 SVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQ 215
            V  P       +  + +++ +         + G + R   EFL  +G R S++    V 
Sbjct: 140 DVHPPMPGKRLPKAISVDEVTRILEAAGTDTATGLRDRALLEFLYSTGARISEAVGLDVD 199

Query: 216 HLQ------NNIFSIKTQKTGTIITVEL-------PDGF----MKLLAMTPIGKETFFIN 258
            +                K      V L        D +      LLA    G    F+N
Sbjct: 200 DISLQADQAGPAIVRLFGKGSKERLVPLGSYGARALDAYLVRGRPLLAAKGKGTPALFLN 259

Query: 259 NDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTV 316
               +++        KA A KA + K  S H +R   AT   + GA    +    G  +V
Sbjct: 260 ARGGRISRQSAWTILKAAADKANITKDVSPHTLRHSFATHLLEGGADVRVVQELLGHASV 319

Query: 317 DQAETYT 323
              + YT
Sbjct: 320 TTTQVYT 326


>gi|290513161|ref|ZP_06552523.1| tyrosine recombinase XerC [Klebsiella sp. 1_1_55]
 gi|289774372|gb|EFD82378.1| tyrosine recombinase XerC [Klebsiella sp. 1_1_55]
          Length = 300

 Score =  127 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 42/259 (16%), Positives = 89/259 (34%), Gaps = 19/259 (7%)

Query: 85  GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIR--SGVESRKH-TPSSAIQFLT 138
             L+  +  +++   D +I    ++G   +++     +R  +    R    P+S    L+
Sbjct: 21  RQLSPITLTNYQRQLDALIVLADEAGLKSWQQCDAAQVRSFAVRSRRAGLGPASLALRLS 80

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLA 195
           ++R  F W V Q  +A NP   +  PK      +    +D+ +            + R  
Sbjct: 81  ALRSFFDWMVSQGELAANPAKGIAAPKIPRHLPKNIDVDDVNRLLDIDLNDPLAVRDRAM 140

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLAMT------ 248
            E +  +GLR S+     ++HL           K      + +    +  +         
Sbjct: 141 LEVMYGAGLRLSELVNLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVAWIEHWLDLRGL 200

Query: 249 -PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAH 305
                +  F++   ++++A      F     K G+N     H +R   AT   ++     
Sbjct: 201 FGTDDDALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVHPHKLRHSFATHMLESSGDLR 260

Query: 306 ELMATYGWKTVDQAETYTK 324
            +    G   +   + YT 
Sbjct: 261 GVQELLGHANLSTTQIYTH 279


>gi|228998607|ref|ZP_04158194.1| Tyrosine recombinase xerC [Bacillus mycoides Rock3-17]
 gi|229006107|ref|ZP_04163795.1| Tyrosine recombinase xerC [Bacillus mycoides Rock1-4]
 gi|228755183|gb|EEM04540.1| Tyrosine recombinase xerC [Bacillus mycoides Rock1-4]
 gi|228761075|gb|EEM10034.1| Tyrosine recombinase xerC [Bacillus mycoides Rock3-17]
          Length = 302

 Score =  127 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 43/272 (15%), Positives = 96/272 (35%), Gaps = 26/272 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGD------FDYRKITTKHIRSGVESRKHTPSSAIQFLT 138
            + +  +  S+++  +  ++           D   +  +   + +   K    S  + ++
Sbjct: 21  RNYSKYTIASYQNDLEHFVQFMEREGISSFLDVTYVDVRLYLTTLHDEKLARKSVARKVS 80

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194
           S+R L+++ +R+ Y   NP      PK+     +    E++++           G + + 
Sbjct: 81  SLRSLYRFLMREGYREDNPFALASLPKKDLSIPKFLYVEELEKLFEVSDVKTPLGQRDQA 140

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVE------------LPDGF 241
             E +  +G+R S+     +  +  ++ +I  T K      V             + +G 
Sbjct: 141 LLELMYATGIRVSECVSLQLTDIDFSVGTILVTGKGKKQRYVPFGSYAQDALITYIENGR 200

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
            +L   T    +  F+N   + +              KA +    S H +R   AT   D
Sbjct: 201 KQLAKKTEEHSQMVFLNAKGKPLTDRGVRYILNELIKKASLTMRISPHMLRHTFATHMLD 260

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            GA    +    G + +   + YT    + RL
Sbjct: 261 EGADLRTVQELLGHENLSTTQIYTH-VSKERL 291


>gi|71276068|ref|ZP_00652349.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella
           fastidiosa Dixon]
 gi|71902095|ref|ZP_00684131.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella
           fastidiosa Ann-1]
 gi|71163151|gb|EAO12872.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella
           fastidiosa Dixon]
 gi|71728140|gb|EAO30335.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella
           fastidiosa Ann-1]
          Length = 339

 Score =  127 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 63/333 (18%), Positives = 116/333 (34%), Gaps = 28/333 (8%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
           +P F  + + + G + YY+  G   R   P          Y  A+     + E+      
Sbjct: 11  IPRFRVRPQ-KSGVVYYYYDHGGKPRKETPLG------RDYGLAIQ-RWAELEHAQITPA 62

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVE 124
              T + +   YR      + A N++     Y + +++   D    +  I   +IR  ++
Sbjct: 63  IAVTFRHVAERYRAEVI-PTKAYNTQRMHHIYLNYLLKFFDDPPAPFESIKPVNIRQYLD 121

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVA-INPCLSVERPKRKTEGIRPWTKEDMQQFK 183
            R     SA + +     L+ WA  +      NPC  + R K +   +      D   ++
Sbjct: 122 WRTSKV-SANREVALFSHLWNWARSKGITDLPNPCGGIRRNKERGRDVYI----DDTTYR 176

Query: 184 SFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
           + +    Q  R A +    +G R SD      +H+ N    I   KTG  + + +     
Sbjct: 177 AVYQAADQTLRDAMDLAYLTGQRVSDVVNMDERHIVNGALEICQAKTGVKLAIAITGELA 236

Query: 243 KLLAMTPIGKE-------TFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKF 292
            L+      K           ++     +N  + +  F+     AG+ K       +R  
Sbjct: 237 VLIKRILARKRGMKLRSTRLIVDEKGLGLNWKKLAYRFRKVRAAAGIAKEVFQFRDLRAK 296

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKG 325
           +AT  AD      +  A  G  +V   E Y + 
Sbjct: 297 AATDKADLAGDMRQAQAQLGHASVTMTEHYVRK 329


>gi|299538025|ref|ZP_07051311.1| integrase-recombinase protein [Lysinibacillus fusiformis ZC1]
 gi|298726607|gb|EFI67196.1| integrase-recombinase protein [Lysinibacillus fusiformis ZC1]
          Length = 276

 Score =  127 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 38/254 (14%), Positives = 84/254 (33%), Gaps = 8/254 (3%)

Query: 85  GSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRV 142
             L+  +   +     Q       G  + +    +   + +E +   P S    L +++ 
Sbjct: 15  ARLSPETIRGYRIALTQFFTFCVKGFGEVKATDIRAWLASLEEKGLKPRSIHAKLAALKS 74

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202
            + + + +  V  NP L+V  PK         ++ ++   +       + R   E L  +
Sbjct: 75  FYNYCMEENQVKKNPTLTVRAPKIDDSLPYYLSRREVALLQELTRHDPRNRAIVETLYTT 134

Query: 203 GLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITV----ELPDGFMKLLAMTPIGKETFF 256
           G+R S+  +  ++ +        I+  K      V    +  +     LA         F
Sbjct: 135 GVRISELLQIKLEDVKWDTRQIWIRKGKGNKERFVLFSYDCLERLNTYLAHRKRESAYLF 194

Query: 257 INNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTV 316
            N   + ++       F+A + + G     H +R   A   A+       +    G   +
Sbjct: 195 SNYWGKPLSHVFVEQQFQAFSEELGFRVRPHTLRHTFAAHLAEKNMPQSYIQELLGHVNI 254

Query: 317 DQAETYTKGADRIR 330
           +    YT+  +  R
Sbjct: 255 NSTRIYTRLMEHAR 268


>gi|163736279|ref|ZP_02143698.1| phage integrase [Phaeobacter gallaeciensis BS107]
 gi|161390149|gb|EDQ14499.1| phage integrase [Phaeobacter gallaeciensis BS107]
          Length = 337

 Score =  127 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 49/308 (15%), Positives = 103/308 (33%), Gaps = 33/308 (10%)

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD--YRKIT 115
                S       L+W+ +     A     A N+ +++      +    G  +  +   T
Sbjct: 3   PPAAQSANAPKDDLQWIATFLDAQAADLGAARNTLLAYGRDLKDVASWLGHKNRAFGSAT 62

Query: 116 TKHIRSGV---ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
              I S +   ++     ++  + L++++ ++++A  + + + NP + ++ P R+    +
Sbjct: 63  RDDIESYLIACDAEGLARATRARRLSAIKQIYRFAFDEGWRSDNPAIQIKGPGRQKALPK 122

Query: 173 PWTKEDMQQFKSFW-------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSI 224
                ++ +            S+  +     E L  +G+R S+     V   + +    +
Sbjct: 123 TLEVIEVDRLLDAARQSGRNLSDRLRNTCMMELLYATGMRVSELVGLPVAAARGDPRMLL 182

Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKET--------------FFINNDKQ--KMNATQ 268
              K G    V L       LA     ++               F   +  +   +   +
Sbjct: 183 VLGKGGKERMVPLSPPARDALAAWLTTRDAAEEAAVAKGAAPSRFLFPSRGKSGHLTRHR 242

Query: 269 FSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           F +  K  A   G+     S H +R   AT     GA    + A  G   +   E YT  
Sbjct: 243 FYLLIKEFAVAGGLPPEAVSPHTLRHAFATHLLTNGADLRAIQALLGHADIATTEIYTHV 302

Query: 326 ADRIRLGI 333
            D  RL  
Sbjct: 303 LD-ARLSE 309


>gi|325674273|ref|ZP_08153962.1| integrase/recombinase XerD [Rhodococcus equi ATCC 33707]
 gi|325554953|gb|EGD24626.1| integrase/recombinase XerD [Rhodococcus equi ATCC 33707]
          Length = 309

 Score =  127 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 55/287 (19%), Positives = 96/287 (33%), Gaps = 34/287 (11%)

Query: 71  LKWLISEYRKSAH-WGSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGVESR 126
           L  LI  Y          A N+  S+    D+    +   G  D R +T   +   V + 
Sbjct: 4   LGGLIDSYLDHLAVERGAARNTLTSYRRDLDRYARFLEARGTDDVRSVTETDVSEFVVAL 63

Query: 127 KHT----------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
           +            PSSA + L ++R L ++A  +   + +   +V+ P       +    
Sbjct: 64  RKGDPAEGVVALAPSSAARALIAVRGLHRFAAAEGVTSGDVARAVKPPTPGRRLPKSLPL 123

Query: 177 EDMQQFK--------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQ 227
           +D+            +      + R   E L  +G R S++    V  L       +   
Sbjct: 124 DDVLAILEASGGDGSADNPRTLRDRALLELLYSTGARISEAVGLDVDDLDTQSRSVLLRG 183

Query: 228 KTGTIITVELPDGFMKLL---------AMTPIGKETFFINNDKQKMNATQFSIWFKAKAT 278
           K G    V +    +  +         A++  G    F+N    +++           A 
Sbjct: 184 KGGKERVVPVGRPAITAIDNYLVRGRPALSVRGGPALFLNVRGGRLSRQSAWQVLHTAAE 243

Query: 279 KAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           KAG+    S H +R   AT   D GA    +    G  +V   + YT
Sbjct: 244 KAGIAVAVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYT 290


>gi|325131793|gb|EGC54493.1| tyrosine recombinase XerD [Neisseria meningitidis M6190]
 gi|325137843|gb|EGC60418.1| tyrosine recombinase XerD [Neisseria meningitidis ES14902]
          Length = 291

 Score =  127 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 43/267 (16%), Positives = 91/267 (34%), Gaps = 18/267 (6%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFD--YRKITTKHIRSGVESRKHTPSSAIQFLTSMRV 142
             L+ N+   +    ++I R+        +      + + V       SS  + L++ + 
Sbjct: 17  RRLSQNTLNGYRRDLEKIARRLSQSGRMLKDADEADLAAAVYVDGEQRSSQARALSACKR 76

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFEF 198
           L+ W  R+     NP   ++ PK         T++ + +  +        G + +   E 
Sbjct: 77  LYIWMEREGIRTDNPTRLLKPPKIDKNIPTLITEQQISRLLAAPDTDTPHGLRDKALLEL 136

Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG----------FMKLLAM 247
           +  +GLR S++       +  +   I    K      V +               + L +
Sbjct: 137 MYATGLRVSEAVGLNFSSVDLDRGCITALGKGDKQRMVPMGQESAYWVERYYTEARPLLL 196

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHE 306
                +  F++  K  ++     +  K  A +AG+   S H +R   AT     G     
Sbjct: 197 KGRNCDALFVSQKKTGISRQLAWMIVKEYAGRAGIGYISPHSLRHAFATHLVRHGLDLRV 256

Query: 307 LMATYGWKTVDQAETYTKGADRIRLGI 333
           +    G   ++  + YT  A+    G+
Sbjct: 257 VQDMLGHADLNTTQIYTHVANVWLQGV 283


>gi|301029172|ref|ZP_07192295.1| phage integrase, SAM-like domain protein [Escherichia coli MS
           196-1]
 gi|299877900|gb|EFI86111.1| phage integrase, SAM-like domain protein [Escherichia coli MS
           196-1]
          Length = 326

 Score =  127 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 59/319 (18%), Positives = 110/319 (34%), Gaps = 24/319 (7%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87
           G  RRI +     +  I A +   +G   K            TL   +  Y K      +
Sbjct: 8   GRDRRIAI-----TEAIQANIELFSGHKHKPLTARINSDNSVTLHSWLDRYEKILASRGI 62

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--TPSSAIQFLTSMRVLFK 145
              + I++ S    I R   D     ITTK I + +         +SA    +++   F+
Sbjct: 63  KQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAMLNGYIDEGKAASAKLIRSTLSDAFR 122

Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLR 205
            A+ + ++  NP  +    K +    R    E ++ +++  S     RLA E  + +G R
Sbjct: 123 EAIAEGHITTNPVAATRAAKSEVRRSRLTADEYLKIYQAAESSPCWLRLAMELAVVTGQR 182

Query: 206 CSDSCRAGVQHLQNNIFSIKTQKTGTIITVE---------LPDGFMKLLAMTPIGKETFF 256
             D C      + +    ++  KTG  I +          +            +G ET  
Sbjct: 183 VGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTALHVDALGISMKETLDKCKEILGGETII 242

Query: 257 INNDKQKMNATQFSIWFKAKATKAGV-----NKSAHGVRKFSATISADAGATAHELMATY 311
            +  ++ +++   S +F      +G+       + H +R   +    +   +        
Sbjct: 243 ASTRREPLSSGTVSRYFMRARKASGLSFEGDPPTFHELR-SLSARLYEKQISDKFAQHLL 301

Query: 312 GWKTVDQAETYTKGADRIR 330
           G K+   A  Y    DR R
Sbjct: 302 GHKSDTMASQY--RDDRGR 318


>gi|217076522|ref|YP_002334238.1| site-specific recombinase XerD [Thermosipho africanus TCF52B]
 gi|259710439|sp|B7IFN3|XERC_THEAB RecName: Full=Tyrosine recombinase xerC
 gi|217036375|gb|ACJ74897.1| site-specific recombinase XerD [Thermosipho africanus TCF52B]
          Length = 283

 Score =  127 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 43/282 (15%), Positives = 102/282 (36%), Gaps = 21/282 (7%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR------K 127
           + S+Y         + N+  +++    + +   G      I  K +   +++        
Sbjct: 7   MFSDYLAHVRRH--SENTLKAYKKDVRKFLTYVG-KQINNIERKDVEEFLKALSKGDITG 63

Query: 128 HTPS--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
            +P   +  ++++S+   F +      +  NP   ++ P+ + +     T++++      
Sbjct: 64  ESPRETTISRYISSLNSFFNYLELSGMIYENPMERIKHPRIRRKIPDFLTEDEVSSLIGA 123

Query: 186 WSEG--SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGF 241
           ++E    + + A   L Y+GLR S+ C      +        ++  K      V LPD  
Sbjct: 124 FNEENELRQKTAISLLYYAGLRISELCNLRTTDISFIPPFLRVEMGKGRKDRLVPLPDKV 183

Query: 242 MKLLAM-TPIGKETFFINNDKQK-MNATQFSIWFKAKATKAGVNKS--AHGVRKFSATIS 297
           + +L     +     F+  + +K ++ +    W K    +A + K    H +R   AT  
Sbjct: 184 IPILKKYIDLENPKIFVFENGKKHVHPSTVFRWLKEGVKRANIKKDVHPHTLRHSYATHL 243

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
              G     +    G   +     Y   AD+ +      +++
Sbjct: 244 IRKGVNIKVVQELLGHTNLSTTSIYLHVADQEK--FDAVKKL 283


>gi|124006330|ref|ZP_01691164.1| tyrosine recombinase XerD [Microscilla marina ATCC 23134]
 gi|123987987|gb|EAY27658.1| tyrosine recombinase XerD [Microscilla marina ATCC 23134]
          Length = 299

 Score =  127 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 46/265 (17%), Positives = 96/265 (36%), Gaps = 25/265 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSG-------DFDYRKITTKHIRSGVESRKHTPSSAIQFL 137
            SL+ NS  ++     +               + +    K   S +       SS  + L
Sbjct: 18  RSLSENSLEAYLHDIQKFSDYLEMAGLSILPAEVKADHIKKFLSYLAKLGIAASSQARIL 77

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPR 193
           + ++  +K+ + +E +  +P ++V  P+   +     + ++++   +       EG++ R
Sbjct: 78  SGIKAFYKYLMLEETIERDPSVNVHTPRIDRKIPDVLSLQEIEDLLAVIDLSTPEGARNR 137

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLL------- 245
              E L  SGLR ++     + +L  +I  ++   K      V +     + L       
Sbjct: 138 AMIEVLYSSGLRVTELIELKISNLYLDIGFLRIIGKANKERFVPIGREAARYLISYIENI 197

Query: 246 ----AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
                + P  ++  F+N    K++     +  K  A  A + K  S H  R   AT    
Sbjct: 198 RSNVPVKPNNEDFVFLNRRGTKISRVMVFMIIKEVALLADIKKNISPHTFRHSFATHLIL 257

Query: 300 AGATAHELMATYGWKTVDQAETYTK 324
            GA    +    G + +   E Y +
Sbjct: 258 GGANIKAVQEMLGHENITTTEIYKR 282


>gi|15838243|ref|NP_298931.1| phage-related integrase [Xylella fastidiosa 9a5c]
 gi|9106699|gb|AAF84451.1|AE003991_3 phage-related integrase [Xylella fastidiosa 9a5c]
          Length = 339

 Score =  127 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 63/337 (18%), Positives = 115/337 (34%), Gaps = 26/337 (7%)

Query: 2   TPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYI 61
           T +  +P F  + + + G + YY+  G   R   P          Y  A+     + E+ 
Sbjct: 6   TKAGAIPRFRVRPQ-KSGVVHYYYDHGGKPRKETPLG------RDYGLAI-KRWAELEHA 57

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHI 119
                   T + +   YR      + A N++     Y + +++   D    +  I   +I
Sbjct: 58  QITPAIAVTFRHVAERYRAEVI-PTKAHNTQRMHHIYLNYLLQFFDDPPAPFESIKPVNI 116

Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA-INPCLSVERPKRKTEGIRPWTKED 178
           R  ++ R     SA + +     L+ WA  +      NPC  + R K     +     +D
Sbjct: 117 RQYLDWRTSKV-SANREVALFSHLWNWARSKGITDLPNPCAGIRRNKESGRDVYI---DD 172

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
                 + +     R A +    +G R SD      +H+ N    I   KTG  + + + 
Sbjct: 173 ATYHAVYQAADQTLRDAMDLAYLTGQRVSDVVSMDERHIVNGALEICQAKTGVKLAIAIT 232

Query: 239 DGFMKLLAMTPIGKE-------TFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHG 288
                L+      K           ++     +N  + +  F+     AG+ K       
Sbjct: 233 GELAILIKRILARKRGMKLRSTRLIVDEKGLGLNWKKLAYRFRKVRAAAGIAKEVFQFRD 292

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           +R  +AT  AD      +  A  G  +V   E Y + 
Sbjct: 293 LRAKAATDKADLAGDMRQAQAQLGHASVVMTEHYVRK 329


>gi|310778330|ref|YP_003966663.1| integrase family protein [Ilyobacter polytropus DSM 2926]
 gi|309747653|gb|ADO82315.1| integrase family protein [Ilyobacter polytropus DSM 2926]
          Length = 297

 Score =  127 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 48/285 (16%), Positives = 98/285 (34%), Gaps = 24/285 (8%)

Query: 71  LKWLISEYRKSAHWGS-LAVNSRISFESYFDQIIRKSGDF-------DYRKITTKHIRSG 122
           L+ LI ++     +G   ++N+  SF+    Q+              D +++  +     
Sbjct: 6   LEKLIKDFIYFEEFGDGKSLNTIKSFKKDLGQLRDYLSKKENINNPKDIKEMALRGFLVE 65

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           ++       S  + ++S+R  FK+   Q Y+  NP + +  P  K +     TKE++ + 
Sbjct: 66  LQKENIGKRSLNRKISSLRTFFKYLKNQGYIEKNPTILLTGPAFKADLPEILTKEEIDRI 125

Query: 183 KSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
           +         G + RL  E L  SG+R S+    G          ++         V   
Sbjct: 126 REVIDIEKTNGIRDRLIVELLYSSGIRTSELLSLGESLFDLEKRQLRVTGGKQPRIVFFS 185

Query: 239 DGFMKL----------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286
           +   +                   +  F+N    +++        +  A KA + K  S 
Sbjct: 186 ERTREYFKRYVESKKKKYRAKYTADILFVNGSGTRLSDRSLRRIIERYAKKAEIQKEISP 245

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           H  R          G     L    G  +V+  + Y +  ++ ++
Sbjct: 246 HTFRHTFGVYMLTHGMGLMHLQELMGHVSVESTKIYEEFVNKPKI 290


>gi|260583822|ref|ZP_05851570.1| integrase/recombinase XerC [Granulicatella elegans ATCC 700633]
 gi|260158448|gb|EEW93516.1| integrase/recombinase XerC [Granulicatella elegans ATCC 700633]
          Length = 294

 Score =  127 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 41/260 (15%), Positives = 94/260 (36%), Gaps = 25/260 (9%)

Query: 90  NSRISFESYFDQIIRKSGDFDYRKI------TTKHIRSGVESRKHTPSSAIQFLTSMRVL 143
            +  +++   +Q +    +    K+        +     +  +++  SS  +FL+S+R  
Sbjct: 2   KTVEAYQRDIEQFLMFLKEIPLTKLSEVTAVDVRIYLGKLHQQQYNRSSISRFLSSLRSF 61

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FWSEGSQPRLAFEFL 199
           +++ +  ++V  NP  S+   K +      + +++M++F +          + R   E L
Sbjct: 62  YQYLLEHDFVEENPFASISYKKGQKRLPEFFYEDEMEKFIASIDGNQPLDQRNRALIEVL 121

Query: 200 LYSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGTIITVELPDGFMKLLAMT---------- 248
             +G+R S+     +Q L   N   +   K      V + D   + L +           
Sbjct: 122 YATGMRVSELTELTLQQLDLKNGVILVIGKGSKERYVPIGDFATEALQLYLEESRSSLMS 181

Query: 249 --PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATA 304
                  + F+N+    +  T           ++G+      H +R   AT   + GA  
Sbjct: 182 QYKKEHASVFVNHLGDPITTTGVRYILNQLLQESGLQLKIHPHMLRHTFATHLLNNGADM 241

Query: 305 HELMATYGWKTVDQAETYTK 324
             +    G  ++   + YT 
Sbjct: 242 KTVQELLGHVSLSSTQIYTH 261


>gi|114776721|ref|ZP_01451764.1| tyrosine recombinase [Mariprofundus ferrooxydans PV-1]
 gi|114552807|gb|EAU55238.1| tyrosine recombinase [Mariprofundus ferrooxydans PV-1]
          Length = 298

 Score =  127 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 42/275 (15%), Positives = 91/275 (33%), Gaps = 17/275 (6%)

Query: 67  KPTTLKWLISEYRKSAHWGSL-AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV-- 123
                +  +S Y +      L + ++  ++           G+   ++IT   ++  +  
Sbjct: 2   AAADFRTAVSAYLQELAEVRLASPHTIAAYRRDLGAFGEHCGNIGLQQITRLQVQDWLVV 61

Query: 124 -ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
             ++    ++  + L+++  L   AV+      N    V  PK+     R    E     
Sbjct: 62  GHAKGLAAATLARRLSALTGLLDSAVQAGICPANVAAGVRPPKKSARLPRTLPPEQTAAL 121

Query: 183 K--SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELP- 238
              +  S   +       +  +GLR S++    +  +  +   ++   K      V LP 
Sbjct: 122 MQPTHASADRRDLALLAVMYGAGLRVSEAVGLDLHDIDLHSCELRVLGKGSKQRIVPLPT 181

Query: 239 -------DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK--AGVNKSAHGV 289
                      + L      +   F+N   Q++ A       K +A +  A ++ + H +
Sbjct: 182 TAADLLGQWLDERLLGLVRDERAVFLNRFGQRLTARSVQRMLKTRALESGADISVTPHRL 241

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           R   AT     G     +    G  ++   E YT 
Sbjct: 242 RHSFATHLLAGGVDLRAIQELLGHASLATTERYTH 276


>gi|159042951|ref|YP_001531745.1| phage integrase family protein [Dinoroseobacter shibae DFL 12]
 gi|157910711|gb|ABV92144.1| phage integrase family protein [Dinoroseobacter shibae DFL 12]
          Length = 397

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 56/337 (16%), Positives = 108/337 (32%), Gaps = 22/337 (6%)

Query: 25  FRKGHGRR---IRLPYPHESTFIPAYMSALTGSTP---KREYINSPRKKPTTLKWLISEY 78
           +RKG   R   I                 L G            S  ++ +T+  L   +
Sbjct: 45  YRKGGRTRRASIGRHGTVTVQQARQRAKELLGDVASGGNPVEEISQHRRASTVAALCERF 104

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFL 137
            ++        +++  +    D  I    G F    +  + I       +  P  A + L
Sbjct: 105 FEAHVMERCKPSTQREYRRSIDFFINPAIGTFKVVDVERRDIAELHHKLRDKPYQANRTL 164

Query: 138 TSMRVLFKWAVRQEYVAI--NPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-------SE 188
             +  +F  A          NPC  V +  R+ +  R  ++ ++++            SE
Sbjct: 165 GVLSKMFNLAEVWGLRPDGSNPCRHVPK-YRERKRERYLSQAELRRLGEVLADCERSGSE 223

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248
                 AF+ L+ +G R  +       +L  N   +   KTG    + LP     +L   
Sbjct: 224 SPYVVAAFKLLILTGCRLGEIQTLRWDYLTPNGMELPDSKTGAR-RIPLPSAARAVLDAL 282

Query: 249 PIG-KETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHE 306
           P      + I    +  + T     ++     AG+ +   H +R   A+ +  +G     
Sbjct: 283 PHDPGNPYVIAGRIEGQHITDLQHPWRRIRDLAGLNDVRIHDLRHTYASNAVSSGMPIQM 342

Query: 307 LMATYGWKTVDQAETYTKGAD--RIRLGIKNSRRISS 341
           +    G   +     Y   AD    +   +N+  +S 
Sbjct: 343 VGRLLGHTQLQTTMRYAHLADDPVRKAAEENAAALSE 379


>gi|325266806|ref|ZP_08133478.1| tyrosine recombinase XerD [Kingella denitrificans ATCC 33394]
 gi|324981738|gb|EGC17378.1| tyrosine recombinase XerD [Kingella denitrificans ATCC 33394]
          Length = 289

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 41/260 (15%), Positives = 94/260 (36%), Gaps = 18/260 (6%)

Query: 86  SLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL 143
            LA N+  ++     ++  +      D++    + +   V +    PS+  + L++++  
Sbjct: 16  RLAHNTLEAYRHDLHKVAERLAAAQTDWQHADNRQLADAVYAADEQPSTQSRTLSAVKKW 75

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLAFEFL 199
           +++    ++   NP   ++  K      +P ++  +    +        G + +   E +
Sbjct: 76  YQYLNDTQHRHDNPSRDLKAAKIPRSLPQPVSEAQIDALLAAPDTDTLHGLRDKALLELM 135

Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-EL----PDGFMKLLAMTPI---- 250
             +GLR S++ +  +  L      + T   G    +  L     D   + L         
Sbjct: 136 YATGLRVSEAVKLSLNELDLTRGMVNTIGKGNKQRIVPLGEVAADWLERYLHTARPELLK 195

Query: 251 --GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHEL 307
                  F++  K  ++           A + G+   S HG+R   AT   + GA    +
Sbjct: 196 GQACAYVFVSQKKVGISRQLAWQVVAKYAQQVGLPALSPHGLRHAFATHLVNHGADLRVV 255

Query: 308 MATYGWKTVDQAETYTKGAD 327
               G +++   E YT  A+
Sbjct: 256 QLLLGHESLTTTEIYTHVAN 275


>gi|301022623|ref|ZP_07186494.1| phage integrase, SAM-like domain protein [Escherichia coli MS
           196-1]
 gi|299881195|gb|EFI89406.1| phage integrase, SAM-like domain protein [Escherichia coli MS
           196-1]
          Length = 327

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 58/317 (18%), Positives = 106/317 (33%), Gaps = 22/317 (6%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87
           G  RRI +     +  I A +  L+ S  K            TL   +  Y        +
Sbjct: 8   GRDRRIAI-----TEAIQANIELLSDSGRKSLIDRIKGGDAITLHVWLDRYETILSERGI 62

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFK 145
              + + + S    I RK  D     I+TK + + + +   +   +SA    +++  +F+
Sbjct: 63  RPKTLLDYASKIRAIRRKLPDKPLTDISTKEVAAMLNTYVAEGKAASAKLIRSTLVDVFR 122

Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLR 205
            A+ + +VA NP  +    K +    R    E ++ + +        RLA +  + +G R
Sbjct: 123 EAIAEGHVATNPVTATRTAKSEVRRSRLTANEYVEIYHAAEPLPIWLRLAMDLAVVTGQR 182

Query: 206 CSDSCRAGVQHLQNNIFSIKTQKTGTIITVE-------LPDGFMKLL--AMTPIGKETFF 256
             D CR     + +N   I+  KTG  + +        L       L         ET  
Sbjct: 183 VGDLCRMKWSDINDNHLHIEQSKTGAKLAIPLMLTIDALNISLADTLQKCREASSSETII 242

Query: 257 INNDKQKMNATQFSIWFKAKATKAGV-----NKSAHGVRKFSATISADAGATAHELMATY 311
            +     ++    S +F      +G+       + H +R   +                 
Sbjct: 243 ASKHHDPLSPKTVSKYFTKARNASGLSFDGTPPTFHELR-SLSARLYRNQIGDKFAQRLL 301

Query: 312 GWKTVDQAETYTKGADR 328
           G K+   A  Y     R
Sbjct: 302 GHKSDSMAARYRDSRGR 318


>gi|312965202|ref|ZP_07779439.1| integrase [Escherichia coli 2362-75]
 gi|312290293|gb|EFR18176.1| integrase [Escherichia coli 2362-75]
          Length = 356

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 61/343 (17%), Positives = 111/343 (32%), Gaps = 25/343 (7%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMS---ALTGSTPKREYINS 63
           LPP +     R+     Y     G+   L          A  +     +G   K      
Sbjct: 12  LPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLTARI 68

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
                 TL   +  Y K      +   + I++ S    I R   D     ITTK I + +
Sbjct: 69  NSDNSVTLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAML 128

Query: 124 ESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
                    +SA    +++   F+ A+ + ++  NP  +    K +    R    E ++ 
Sbjct: 129 SGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEYLKI 188

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE----- 236
           +++  S     RLA E  + +G R  D C      + +    ++  KTG  I +      
Sbjct: 189 YQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTTLHV 248

Query: 237 ----LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK-----AGVNKSAH 287
               +            +G ET   +  ++ +++   S +F            G   + H
Sbjct: 249 DALGISMKETLDKCKEILGGETIIASTHREPLSSGTVSRYFMRARKASDLSFEGDPPTFH 308

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
            +R   +    +   +        G K+   A  Y    DR R
Sbjct: 309 ELR-SLSARLYEKQISDKFAQHLLGHKSDTMASQY--RDDRGR 348


>gi|227498489|ref|ZP_03928635.1| tyrosine recombinase xerC [Acidaminococcus sp. D21]
 gi|226903947|gb|EEH89865.1| tyrosine recombinase xerC [Acidaminococcus sp. D21]
          Length = 302

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 45/269 (16%), Positives = 94/269 (34%), Gaps = 27/269 (10%)

Query: 88  AVNSRISFESYFDQI------IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMR 141
           + N+ ++++              K+   +   +  +   + +   +    +  + ++S+R
Sbjct: 23  SPNTILNYKDDLIAFSVFLSGRGKATWLEVSLLDIRSYLAQLHREEKARRTIARRISSLR 82

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLAFE 197
             +++ +R+     NP   V+ PK + +      + +M             G + R   E
Sbjct: 83  SFYRYLMREGLTDKNPFTKVKTPKLEKKLPVFLEEFEMNHLLELPDLSTELGQRDRALLE 142

Query: 198 FLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG----- 251
           FL  +G R S+     +  L  +N +++   K      V L    ++ +     G     
Sbjct: 143 FLYSTGCRVSELVGLTLTRLDLSNRYALLLGKGHKERIVPLGHPCIRAMNAYLTGARRVL 202

Query: 252 --------KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301
                    +  F+N+    + A             A + K  S H +R   AT   D G
Sbjct: 203 MEKYEVPSHDFIFVNHRGTPLTARSVRRILDRYVEMASIQKHVSPHTIRHTFATHLLDHG 262

Query: 302 ATAHELMATYGWKTVDQAETYTK-GADRI 329
           A    +    G  ++   + YT   ADRI
Sbjct: 263 ADLRSVQELLGHASLSTTQIYTHVTADRI 291


>gi|261405985|ref|YP_003242226.1| integrase family protein [Paenibacillus sp. Y412MC10]
 gi|261282448|gb|ACX64419.1| integrase family protein [Paenibacillus sp. Y412MC10]
          Length = 294

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 40/270 (14%), Positives = 96/270 (35%), Gaps = 25/270 (9%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH------IRSGVESRKHT 129
            +Y +      L+ ++  S+ +     +  + + +       +          +  +   
Sbjct: 9   VQYLE--DEKGLSRSTIASYRADLQGFLAFAAEREVTHPREVNRTLLGLYVGRLRQQGKA 66

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            SS ++   S+R  F++ VRQ  +  +P   ++ PK + +  +  T E + +  S    G
Sbjct: 67  ASSLLRCTASLRSFFQYLVRQAVIVQDPTQLLDNPKPERKPPKSLTVEQVDKLLSAPDSG 126

Query: 190 S----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-KTGTIITVELPDGFMKL 244
           +    + +   E L  SG++ S+     +  +   +  ++     G    + +     + 
Sbjct: 127 TPQGARDKAMLELLYASGIKVSELVNLSIHDIHLEMRFLRCAVSGGKERILPITPIAAES 186

Query: 245 LA----------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292
           +A          M   G++  F+N+   ++    F    K     AG+++  + H +R  
Sbjct: 187 VAFYVRDMRDKLMRDAGEDALFLNSLGTRLTRQGFWKIIKKYGKLAGIDEDITPHTLRHS 246

Query: 293 SATISADAGATAHELMATYGWKTVDQAETY 322
            A      GA    +    G   +     Y
Sbjct: 247 FAMHLLGNGADLRSVQEMLGHSALSTTGMY 276


>gi|237718760|ref|ZP_04549241.1| integrase [Bacteroides sp. 2_2_4]
 gi|260175400|ref|ZP_05761812.1| integrase, site-specific recombinase [Bacteroides sp. D2]
 gi|299144639|ref|ZP_07037707.1| tyrosine recombinase XerC [Bacteroides sp. 3_1_23]
 gi|315923630|ref|ZP_07919870.1| integrase [Bacteroides sp. D2]
 gi|229451892|gb|EEO57683.1| integrase [Bacteroides sp. 2_2_4]
 gi|298515130|gb|EFI39011.1| tyrosine recombinase XerC [Bacteroides sp. 3_1_23]
 gi|313697505|gb|EFS34340.1| integrase [Bacteroides sp. D2]
          Length = 293

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 51/276 (18%), Positives = 105/276 (38%), Gaps = 24/276 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIR----KSGDFDYRKITTKHIRSGV---ES 125
           LI  +     +  + +  + +++     Q+      + G F+  ++  + IR  +     
Sbjct: 2   LIESFLDYLQYERNYSEKTVLAYGEDIKQLQEFAQEEYGKFNPLEVEAELIREWIVSLMD 61

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           + +T +S  + L+S+R  +K+ +RQ    I+P   ++ PK K        + +M +    
Sbjct: 62  KGYTSTSVNRKLSSLRTFYKYLIRQGKTTIDPLRKIKGPKNKKPLPVFLKENEMNRLLDD 121

Query: 186 WS-----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPD 239
                  +G + RL  E    +G+R S+      + +  +   +K T K      +   D
Sbjct: 122 TDFGEGFKGCRDRLVIEVFYATGMRLSELIGLDDKDVDFSASLLKVTGKRNKQRLIPFGD 181

Query: 240 GFMKLL--------AMTPIGKETFFINNDKQKMNATQFSIWFKA-KATKAGVNK-SAHGV 289
              +L+           P   E FFI  + +++         K   +  A + K S H +
Sbjct: 182 ELRELMLEYINVRNETIPERSEAFFIRENGERLYKNLVYNLVKRNLSKVATLKKRSPHVL 241

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           R   AT   +  A    +    G +++   E YT  
Sbjct: 242 RHTFATTMLNNEAELGAVKELLGHESITTTEIYTHA 277


>gi|295095176|emb|CBK84266.1| tyrosine recombinase XerC subunit [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 300

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 43/259 (16%), Positives = 93/259 (35%), Gaps = 19/259 (7%)

Query: 85  GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLT 138
             L+  + ++++   D I     + G   +++     +R  V     +  +P+S    L+
Sbjct: 21  RQLSPITLLNYQRQLDAIMQIADEIGLKSWQQCDAATVRGFVVRSRKKNLSPASLALRLS 80

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLA 195
           ++R  F W V Q  +  NP   +  PK      +    +D+ +            + R  
Sbjct: 81  ALRSFFDWLVSQGGLKANPAKGIATPKAPRHLPKNIDVDDVNRLLDIDLNDPLAVRDRAM 140

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT--------VELPDGFMKLLAM 247
            E +  +GLR S+     ++HL      +     G+           V   + ++ L  +
Sbjct: 141 LEVMYGAGLRLSELVNLDLKHLDLESGEVWVMGKGSKERRLPIGRNAVSWIEHWLDLRGL 200

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAH 305
               ++  F++   ++++A      F     K G+N     H +R   AT   ++     
Sbjct: 201 FGADEDALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVHPHKLRHSFATHMLESSGDLR 260

Query: 306 ELMATYGWKTVDQAETYTK 324
            +    G   +   + YT 
Sbjct: 261 GVQELLGHANLSTTQIYTH 279


>gi|229061434|ref|ZP_04198779.1| Tyrosine recombinase xerC [Bacillus cereus AH603]
 gi|228717857|gb|EEL69505.1| Tyrosine recombinase xerC [Bacillus cereus AH603]
          Length = 301

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 43/272 (15%), Positives = 97/272 (35%), Gaps = 26/272 (9%)

Query: 85  GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLT 138
            + +  +  S+++  +  +    + G   +  +T   +R  +     +K    S  + ++
Sbjct: 20  RNYSKYTIASYQNDLEHFVQFMEREGISSFLDVTYADVRLYLTTLHDQKLARKSVARKVS 79

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194
           S+R L+++ +R+ Y   NP      PK++    +    E++++           G + + 
Sbjct: 80  SLRSLYRFLMREGYQKDNPFALASLPKKELSIPKFLYAEELEELFEVSDTGAPLGQRNQA 139

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE------------LPDGF 241
             E +  +G+R S+     +  +   + +I    K      +             + +G 
Sbjct: 140 LLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQRYIPFGSYAQDALITYIENGR 199

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
            +L   T       F+N   + +              KA +    S H +R   AT   D
Sbjct: 200 KQLAQKTEEQSHMVFLNAKGKPLTDQGVRYVLNELIKKASLTMRISPHMLRHTFATHMLD 259

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            GA    +    G + +   + YT    + RL
Sbjct: 260 EGADLRTVQELLGHENLSTTQIYTH-VSKERL 290


>gi|300926171|ref|ZP_07141983.1| phage integrase, SAM-like domain protein [Escherichia coli MS
           182-1]
 gi|300417806|gb|EFK01117.1| phage integrase, SAM-like domain protein [Escherichia coli MS
           182-1]
          Length = 356

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 62/343 (18%), Positives = 115/343 (33%), Gaps = 25/343 (7%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHE---STFIPAYMSALTGSTPKREYINS 63
           LPP +     R+     Y     G+   L        +  I A +   +G   K      
Sbjct: 12  LPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLTARI 68

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
                 TL   +  Y K      +   + I++ S    I R   D     ITTK I + +
Sbjct: 69  NSDNSVTLHSWLDRYEKILASRGIKQKTLINYISKIKAIRRGLPDASLEDITTKEIAAML 128

Query: 124 ESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
                    +SA    +++   F+ A+ + ++  NP  +    K +    R    E ++ 
Sbjct: 129 NGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEYLKI 188

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE----- 236
           +++  S     RLA E  + +G R  D C      + +    ++  KTG  I +      
Sbjct: 189 YQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTTLHV 248

Query: 237 ----LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NKSAH 287
               +            +G ET   +  ++ +++   S +F      +G+       + H
Sbjct: 249 DALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPPTFH 308

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
            +R   +    +   +        G K+   A  Y    DR R
Sbjct: 309 ELR-SLSARLYEKQISDKFAQHLLGHKSDTMASQY--RDDRGR 348


>gi|228954107|ref|ZP_04116136.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
 gi|229071329|ref|ZP_04204552.1| Tyrosine recombinase xerC [Bacillus cereus F65185]
 gi|229081086|ref|ZP_04213596.1| Tyrosine recombinase xerC [Bacillus cereus Rock4-2]
 gi|229192000|ref|ZP_04318970.1| Tyrosine recombinase xerC [Bacillus cereus ATCC 10876]
 gi|228591551|gb|EEK49400.1| Tyrosine recombinase xerC [Bacillus cereus ATCC 10876]
 gi|228702130|gb|EEL54606.1| Tyrosine recombinase xerC [Bacillus cereus Rock4-2]
 gi|228711783|gb|EEL63735.1| Tyrosine recombinase xerC [Bacillus cereus F65185]
 gi|228805673|gb|EEM52263.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
          Length = 299

 Score =  126 bits (317), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 43/272 (15%), Positives = 98/272 (36%), Gaps = 26/272 (9%)

Query: 85  GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLT 138
            + +  +  S+++  +  +    + G   +  +T   +R  +      K    S  + ++
Sbjct: 18  RNYSKYTIASYQNDLEHFVQFMEREGISSFLDVTYADVRLYLTTLHDEKLARKSVARKVS 77

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194
           S+R L+++ +R+ Y   NP      PK++    +    E++++           G + + 
Sbjct: 78  SLRSLYRFLMREGYRKDNPFALASLPKKELSIPKFLYAEELEELFEVSDTETPLGQRNQA 137

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE------------LPDGF 241
             E +  +G+R S+     +  +   + +I    K      +             + +G 
Sbjct: 138 LLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQRYIPFGSYAQDSLITYIENGR 197

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
            +L+  T       F+N   + + +            KA +    S H +R   AT   D
Sbjct: 198 KQLVNKTDEDSHMVFLNAKGKPLTSRGVRYVLNELIKKASLTMRISPHMLRHTFATHMLD 257

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            GA    +    G + +   + YT    + RL
Sbjct: 258 EGADLRTVQELLGHENLSTTQIYTH-VSKERL 288


>gi|223986264|ref|ZP_03636278.1| hypothetical protein HOLDEFILI_03588 [Holdemania filiformis DSM
           12042]
 gi|223961759|gb|EEF66257.1| hypothetical protein HOLDEFILI_03588 [Holdemania filiformis DSM
           12042]
          Length = 304

 Score =  126 bits (317), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 47/299 (15%), Positives = 105/299 (35%), Gaps = 25/299 (8%)

Query: 70  TLKWLISEY--RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI-----RSG 122
           TL+    +Y    S  +   +  +   + +   +  +     +  +I             
Sbjct: 2   TLEEAFRQYLIYISIQFPK-SEKTIAGYRNDLSRYFQFLAQKEIDRIDQIDSAMLEEYVR 60

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           V +R H  +S    +T++R   ++   + +  ++P   +E+ +R        T++++++ 
Sbjct: 61  VLARDHAAASVNHAITAIRGFHQFLAFR-FDELDPAEYLEQLQRTQSLPVYCTRDEIEKI 119

Query: 183 KS---FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELP 238
            +      +  +     E L   GLR S+     +  +   +  ++   K      V +P
Sbjct: 120 MAQFGHSPKDIRWHAIAELLYGCGLRVSECAALTMNQVDLELGMLRIWGKGNKERLVPMP 179

Query: 239 -------DGFMKLLAMTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287
                    ++  +      K T   FI    +K          K+   +AG+ K  + H
Sbjct: 180 KQTIKIVREYVDTVRPLYQKKPTSWLFITRLGKKTTTASIESMIKSVCIQAGIQKPITPH 239

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346
            +R   AT   + GA    +    G   +   + YT   DR RL       +  ++D +
Sbjct: 240 KLRHTYATHMLEGGADLRSVQELLGHSDITTTQIYTH-IDRSRLRTAYDEGLGKLMDQE 297


>gi|312139850|ref|YP_004007186.1| tyrosine recombinase xerd [Rhodococcus equi 103S]
 gi|311889189|emb|CBH48503.1| tyrosine recombinase XerD [Rhodococcus equi 103S]
          Length = 309

 Score =  126 bits (317), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 55/287 (19%), Positives = 96/287 (33%), Gaps = 34/287 (11%)

Query: 71  LKWLISEYRKSAH-WGSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGVESR 126
           L  LI  Y          A N+  S+    D+    +   G  D R +T   +   V + 
Sbjct: 4   LGGLIDSYLDHLAVERGAARNTLTSYRRDLDRYARFLEARGTDDIRSVTETDVSEFVVAL 63

Query: 127 KHT----------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
           +            PSSA + L ++R L ++A  +   + +   +V+ P       +    
Sbjct: 64  RKGDPAEGVVALAPSSAARALIAVRGLHRFAAAEGVTSGDVARAVKPPTPGRRLPKSLPL 123

Query: 177 EDMQQFK--------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQ 227
           +D+            +      + R   E L  +G R S++    V  L       +   
Sbjct: 124 DDVLAILEASGGDGSADNPRTLRDRALLELLYSTGARISEAVGLDVDDLDTQSRSVLLRG 183

Query: 228 KTGTIITVELPDGFMKLL---------AMTPIGKETFFINNDKQKMNATQFSIWFKAKAT 278
           K G    V +    +  +         A++  G    F+N    +++           A 
Sbjct: 184 KGGKERVVPVGRPAITAIDNYLVRGRPALSVRGGPALFLNVRGGRLSRQSAWQVLHTAAE 243

Query: 279 KAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           KAG+    S H +R   AT   D GA    +    G  +V   + YT
Sbjct: 244 KAGIAVAVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYT 290


>gi|288553072|ref|YP_003425007.1| integrase/recombinase [Bacillus pseudofirmus OF4]
 gi|288544232|gb|ADC48115.1| integrase/recombinase [Bacillus pseudofirmus OF4]
          Length = 321

 Score =  126 bits (317), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 45/272 (16%), Positives = 95/272 (34%), Gaps = 26/272 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGD------FDYRKITTKHIRSGVESRKHTPSSAIQFLT 138
            + ++++  S+ S  +       +       D   +  +   + +  + +  +S  + ++
Sbjct: 40  KNYSLHTVKSYLSDIEDFCHFMKEHNCAAFSDVTYLFVRSYLTFLYDKAYARNSVARKIS 99

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ----QFKSFWSEGSQPRL 194
           SMR LF + +R+E +  N       PK+ ++      +E+M      F+       + R 
Sbjct: 100 SMRSLFHFLMREEELTRNVFAETHLPKQASKLPSFLYEEEMDELFKAFEGNTPLDKRDRA 159

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVEL------------PDGF 241
             E L  +G+R  +  +  V  +   I +     K      V +             D  
Sbjct: 160 ILELLYATGMRVGECSQLDVADIDLRIGTAFVKGKGNKERYVPIGSFACDALHEYIEDAR 219

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
           + LL       +  F+N     +           +  +A + K    H +R   AT   +
Sbjct: 220 VNLLKKGNSETKRLFLNYRGGPLTDRSIRRMLAKRVEEASMQKHIRPHDLRHSFATHLLN 279

Query: 300 AGATAHELMATYGWKTVDQAETYTK-GADRIR 330
            GA    +    G + +   + YT    DR+R
Sbjct: 280 NGADLRVVQELLGHEHLSTTQVYTHVTKDRLR 311


>gi|206577103|ref|YP_002241126.1| tyrosine recombinase XerC [Klebsiella pneumoniae 342]
 gi|206566161|gb|ACI07937.1| tyrosine recombinase XerC [Klebsiella pneumoniae 342]
          Length = 300

 Score =  126 bits (317), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 42/259 (16%), Positives = 89/259 (34%), Gaps = 19/259 (7%)

Query: 85  GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIR--SGVESRKH-TPSSAIQFLT 138
             L+  +  +++   D +I    ++G   +++     +R  +    R    P+S    L+
Sbjct: 21  RQLSPITLTNYQRQLDALIALADEAGLKSWQQCDAAQVRSFAVRSRRAGLGPASLALRLS 80

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLA 195
           ++R  F W V Q  +A NP   +  PK      +    +D+ +            + R  
Sbjct: 81  ALRSFFDWMVSQGELAANPAKGIAAPKIPRHLPKNIDVDDVNRLLDIDLNDPLAVRDRAM 140

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLAMT------ 248
            E +  +GLR S+     ++HL           K      + +    +  +         
Sbjct: 141 LEVMYGAGLRLSELVNLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVAWIEHWLDLRGL 200

Query: 249 -PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAH 305
                +  F++   ++++A      F     K G+N     H +R   AT   ++     
Sbjct: 201 FGTDDDALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVHPHKLRHSFATHMLESSGDLR 260

Query: 306 ELMATYGWKTVDQAETYTK 324
            +    G   +   + YT 
Sbjct: 261 GVQELLGHANLSTTQIYTH 279


>gi|293404020|ref|ZP_06648014.1| integrase [Escherichia coli FVEC1412]
 gi|298379800|ref|ZP_06989405.1| integrase [Escherichia coli FVEC1302]
 gi|291428606|gb|EFF01631.1| integrase [Escherichia coli FVEC1412]
 gi|298279498|gb|EFI21006.1| integrase [Escherichia coli FVEC1302]
          Length = 293

 Score =  126 bits (317), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 51/277 (18%), Positives = 98/277 (35%), Gaps = 19/277 (6%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH- 128
           TL   +  Y K      +   + I++ S    I R   D     ITTK I + +      
Sbjct: 12  TLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDVPLEDITTKEIAAMLNGYIDE 71

Query: 129 -TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              +SA    +++   F+ A+ + ++  NP  +    K +    R    E ++ +++  S
Sbjct: 72  GKAASAKLIRSTLSDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEYLKIYQAAES 131

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE---------LP 238
                RLA E  + +G R  D C      + +    ++  KTG  I +          + 
Sbjct: 132 SPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTALHVDALGIS 191

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NKSAHGVRKFS 293
                      +G ET   +  ++ +++   S +F      +G+       + H +R   
Sbjct: 192 MKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPPTFHELR-SL 250

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
           +    +   +        G K+   A  Y    DR R
Sbjct: 251 SARLYEKQISDKFAQHLLGHKSDTMASQY--RDDRGR 285


>gi|190572731|ref|YP_001970576.1| site-specific tyrosine recombinase XerD [Stenotrophomonas
           maltophilia K279a]
 gi|190010653|emb|CAQ44262.1| putative integrase/recombinase [Stenotrophomonas maltophilia K279a]
          Length = 325

 Score =  126 bits (317), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 45/268 (16%), Positives = 81/268 (30%), Gaps = 30/268 (11%)

Query: 86  SLAVNSRISFESYFDQIIR-----KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSM 140
            LA  +  S+    + + R       G     +       +       +P S  + L+++
Sbjct: 40  GLARATLDSYRRDLEGLARWMDGRDGGLAGIERPGLFDYLAWRTRHGWSPRSNARLLSAL 99

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLAF 196
           R  F   VR+     +P   ++ PK      +   +  +    +        G + R   
Sbjct: 100 RAFFADGVRRGERGEDPSALLDPPKLPRLLPKALAERQIDALLAVPDIDSPLGLRDRAML 159

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAMTPIGKETF 255
           E +  +GLR S+        +      ++ T K      V L +     L          
Sbjct: 160 ELMYAAGLRVSELVLLPATAVNLRQGVLRVTGKGSKERLVPLGEESQHWLERYLQASRPL 219

Query: 256 FINNDK-----------------QKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSAT 295
            +   K                   +    F    K  A  AG++    S HG+R   AT
Sbjct: 220 LVGKGKVQALADGQTPLFVEPTLHALTRQAFWHLVKRHAQVAGIDPARISPHGLRHSFAT 279

Query: 296 ISADAGATAHELMATYGWKTVDQAETYT 323
              + GA    L    G  ++   + YT
Sbjct: 280 HLLNRGADLRALQMLLGHSSLSTTQIYT 307


>gi|110835195|ref|YP_694054.1| integrase/recombinase XerC [Alcanivorax borkumensis SK2]
 gi|122959294|sp|Q0VM16|XERC_ALCBS RecName: Full=Tyrosine recombinase xerC
 gi|110648306|emb|CAL17782.1| integrase/recombinase XerC [Alcanivorax borkumensis SK2]
          Length = 307

 Score =  126 bits (316), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 32/260 (12%), Positives = 87/260 (33%), Gaps = 20/260 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR---SGVESRKHTPSSAIQFLTSMR 141
             L+ ++   ++    +     G   +  +T   +R   + +  +  +  +  + L+++R
Sbjct: 23  RRLSPHTVNGYQRDLIEARTLLGSQPWDTLTVHDMRSLAASLHRQGKSGKTIQRMLSTLR 82

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-----WSEGSQPRLAF 196
             F++ +R+     NP + +  PK      +    + +                + +   
Sbjct: 83  TFFRYLMREGLARDNPAIDIRAPKSGKRLPKALDVDQVSHLLDAGTSNSEPLALRDQAIM 142

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-----IITVELPDGFMKLLAMTP-- 249
           E L   GLR ++     +  +  +   +     G       +         + L + P  
Sbjct: 143 ELLYACGLRLAELLSLNLDSIDLHESQLLVTGKGNKTRQLPVGKPALTAVRRWLQVRPML 202

Query: 250 ---IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATA 304
                +   FI+ + ++++ +      K  A + G++     H +R   AT   ++    
Sbjct: 203 IKSSDQNALFISKNGRRLSPSSVQQRLKRHALERGLDAHLHPHKLRHSFATHLLESSGDL 262

Query: 305 HELMATYGWKTVDQAETYTK 324
             +    G   +   + YT 
Sbjct: 263 RAVQELLGHADLATTQVYTH 282


>gi|322834929|ref|YP_004214956.1| tyrosine recombinase XerC [Rahnella sp. Y9602]
 gi|321170130|gb|ADW75829.1| tyrosine recombinase XerC [Rahnella sp. Y9602]
          Length = 303

 Score =  126 bits (316), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 42/260 (16%), Positives = 88/260 (33%), Gaps = 21/260 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDF---DYRKITTKHIRSGVESRKH---TPSSAIQFLT 138
             L+  +  ++    + +I  SG+     ++++    +R  +   K     PSS    ++
Sbjct: 23  RQLSPLTTTNYSRQLEALIAISGEIGISHWQQLDAPKVRMLLARSKRAGLGPSSLALRMS 82

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLA 195
           S+R    W VRQ  ++ NP   +  P+      +    +++ +            + R  
Sbjct: 83  SLRSFLDWLVRQGVLSANPAKGISTPRSPKHLPKNLDVDEVNKLLDIDLNDPLSVRDRAM 142

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---------ITVELPDGFMKLLA 246
            E +   GLR S+      +H+      ++    G+            + L     +   
Sbjct: 143 LEVMYGGGLRLSELVGIDCKHIDMASGEVRVLGKGSKERKVPIGRTAVIWLEHWLERRAD 202

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATA 304
             P     F  ++   +++A      F     K GVN     H +R   AT   ++    
Sbjct: 203 FNPQDDAMFL-SSKGSRISARNVQKRFAEWGVKQGVNSHIHPHKLRHSFATHVLESSGDL 261

Query: 305 HELMATYGWKTVDQAETYTK 324
             +    G   +   + YT 
Sbjct: 262 RAVQELLGHANLSTTQIYTH 281


>gi|50842870|ref|YP_056097.1| site-specific tyrosine recombinase XerD [Propionibacterium acnes
           KPA171202]
 gi|289425573|ref|ZP_06427350.1| tyrosine recombinase XerD [Propionibacterium acnes SK187]
 gi|289428211|ref|ZP_06429907.1| tyrosine recombinase XerD [Propionibacterium acnes J165]
 gi|295130925|ref|YP_003581588.1| tyrosine recombinase XerD [Propionibacterium acnes SK137]
 gi|50840472|gb|AAT83139.1| site-specific recombinase [Propionibacterium acnes KPA171202]
 gi|289154551|gb|EFD03239.1| tyrosine recombinase XerD [Propionibacterium acnes SK187]
 gi|289158592|gb|EFD06799.1| tyrosine recombinase XerD [Propionibacterium acnes J165]
 gi|291376433|gb|ADE00288.1| tyrosine recombinase XerD [Propionibacterium acnes SK137]
 gi|313764051|gb|EFS35415.1| tyrosine recombinase XerD [Propionibacterium acnes HL013PA1]
 gi|313792446|gb|EFS40539.1| tyrosine recombinase XerD [Propionibacterium acnes HL110PA1]
 gi|313801509|gb|EFS42758.1| tyrosine recombinase XerD [Propionibacterium acnes HL110PA2]
 gi|313807151|gb|EFS45646.1| tyrosine recombinase XerD [Propionibacterium acnes HL087PA2]
 gi|313809643|gb|EFS47379.1| tyrosine recombinase XerD [Propionibacterium acnes HL083PA1]
 gi|313813282|gb|EFS50996.1| tyrosine recombinase XerD [Propionibacterium acnes HL025PA1]
 gi|313816401|gb|EFS54115.1| tyrosine recombinase XerD [Propionibacterium acnes HL059PA1]
 gi|313819347|gb|EFS57061.1| tyrosine recombinase XerD [Propionibacterium acnes HL046PA2]
 gi|313819996|gb|EFS57710.1| tyrosine recombinase XerD [Propionibacterium acnes HL036PA1]
 gi|313823212|gb|EFS60926.1| tyrosine recombinase XerD [Propionibacterium acnes HL036PA2]
 gi|313825000|gb|EFS62714.1| tyrosine recombinase XerD [Propionibacterium acnes HL063PA1]
 gi|313827302|gb|EFS65016.1| tyrosine recombinase XerD [Propionibacterium acnes HL063PA2]
 gi|313829963|gb|EFS67677.1| tyrosine recombinase XerD [Propionibacterium acnes HL007PA1]
 gi|313833033|gb|EFS70747.1| tyrosine recombinase XerD [Propionibacterium acnes HL056PA1]
 gi|313838270|gb|EFS75984.1| tyrosine recombinase XerD [Propionibacterium acnes HL086PA1]
 gi|314914912|gb|EFS78743.1| tyrosine recombinase XerD [Propionibacterium acnes HL005PA4]
 gi|314917863|gb|EFS81694.1| tyrosine recombinase XerD [Propionibacterium acnes HL050PA1]
 gi|314919752|gb|EFS83583.1| tyrosine recombinase XerD [Propionibacterium acnes HL050PA3]
 gi|314924835|gb|EFS88666.1| tyrosine recombinase XerD [Propionibacterium acnes HL036PA3]
 gi|314930006|gb|EFS93837.1| tyrosine recombinase XerD [Propionibacterium acnes HL067PA1]
 gi|314956418|gb|EFT00730.1| tyrosine recombinase XerD [Propionibacterium acnes HL027PA1]
 gi|314957287|gb|EFT01390.1| tyrosine recombinase XerD [Propionibacterium acnes HL002PA1]
 gi|314960608|gb|EFT04710.1| tyrosine recombinase XerD [Propionibacterium acnes HL002PA2]
 gi|314963140|gb|EFT07240.1| tyrosine recombinase XerD [Propionibacterium acnes HL082PA1]
 gi|314967736|gb|EFT11835.1| tyrosine recombinase XerD [Propionibacterium acnes HL037PA1]
 gi|314972871|gb|EFT16968.1| tyrosine recombinase XerD [Propionibacterium acnes HL053PA1]
 gi|314975706|gb|EFT19801.1| tyrosine recombinase XerD [Propionibacterium acnes HL045PA1]
 gi|314978092|gb|EFT22186.1| tyrosine recombinase XerD [Propionibacterium acnes HL072PA2]
 gi|314984110|gb|EFT28202.1| tyrosine recombinase XerD [Propionibacterium acnes HL005PA1]
 gi|314986253|gb|EFT30345.1| tyrosine recombinase XerD [Propionibacterium acnes HL005PA2]
 gi|314989533|gb|EFT33624.1| tyrosine recombinase XerD [Propionibacterium acnes HL005PA3]
 gi|315078203|gb|EFT50246.1| tyrosine recombinase XerD [Propionibacterium acnes HL053PA2]
 gi|315080906|gb|EFT52882.1| tyrosine recombinase XerD [Propionibacterium acnes HL078PA1]
 gi|315086002|gb|EFT57978.1| tyrosine recombinase XerD [Propionibacterium acnes HL002PA3]
 gi|315088279|gb|EFT60255.1| tyrosine recombinase XerD [Propionibacterium acnes HL072PA1]
 gi|315095700|gb|EFT67676.1| tyrosine recombinase XerD [Propionibacterium acnes HL038PA1]
 gi|315098208|gb|EFT70184.1| tyrosine recombinase XerD [Propionibacterium acnes HL059PA2]
 gi|315101638|gb|EFT73614.1| tyrosine recombinase XerD [Propionibacterium acnes HL046PA1]
 gi|315105953|gb|EFT77929.1| tyrosine recombinase XerD [Propionibacterium acnes HL030PA1]
 gi|315109457|gb|EFT81433.1| tyrosine recombinase XerD [Propionibacterium acnes HL030PA2]
 gi|327327897|gb|EGE69671.1| tyrosine recombinase XerD [Propionibacterium acnes HL096PA3]
 gi|327330004|gb|EGE71758.1| tyrosine recombinase XerD [Propionibacterium acnes HL097PA1]
 gi|327330036|gb|EGE71789.1| tyrosine recombinase XerD [Propionibacterium acnes HL096PA2]
 gi|327442733|gb|EGE89387.1| tyrosine recombinase XerD [Propionibacterium acnes HL043PA1]
 gi|327443869|gb|EGE90523.1| tyrosine recombinase XerD [Propionibacterium acnes HL043PA2]
 gi|327443937|gb|EGE90591.1| tyrosine recombinase XerD [Propionibacterium acnes HL013PA2]
 gi|327452342|gb|EGE98996.1| tyrosine recombinase XerD [Propionibacterium acnes HL087PA3]
 gi|327452783|gb|EGE99437.1| tyrosine recombinase XerD [Propionibacterium acnes HL083PA2]
 gi|327453535|gb|EGF00190.1| tyrosine recombinase XerD [Propionibacterium acnes HL092PA1]
 gi|328752650|gb|EGF66266.1| tyrosine recombinase XerD [Propionibacterium acnes HL025PA2]
 gi|328753798|gb|EGF67414.1| tyrosine recombinase XerD [Propionibacterium acnes HL087PA1]
 gi|328755026|gb|EGF68642.1| tyrosine recombinase XerD [Propionibacterium acnes HL020PA1]
 gi|328761444|gb|EGF74970.1| tyrosine recombinase XerD [Propionibacterium acnes HL099PA1]
          Length = 306

 Score =  126 bits (316), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 41/268 (15%), Positives = 89/268 (33%), Gaps = 29/268 (10%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDF------DYRKITTKHIRSGVESRKHTPSSAIQFLT 138
             L+ N+  ++     +     G        +  ++  +  R  ++     P+S  + + 
Sbjct: 20  RGLSDNTVQAYRRDLLRYQEYLGSRGIGSLAEVTRVDVEEFRRHLDHIGLAPASVTRCVV 79

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRL 194
           ++R L ++AV    +  +    +    R     +  + + ++   +       EG +   
Sbjct: 80  AVRNLHRFAVGSGQLQADVTAGMSPGTRSRRLPKALSMDQVESLLAAPDTSTVEGLRDAA 139

Query: 195 AFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKT-QKTGTIITVELPDGFMKLLAMTP 249
             E L  +G R S+ C   V  +     +    ++   K      V L     K +    
Sbjct: 140 LLELLYGTGARVSEVCALDVDDIRPVLDDPDLGLRLIGKGDKERIVPLGSYAAKAVDAWL 199

Query: 250 I-----------GKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSAT 295
           I           G+    +N   ++++        +     AG++    S H +R   AT
Sbjct: 200 IRGRPAWAEIGNGEHALLLNTRGRRLSRQSAWAVIRRAGEAAGLDVEHLSPHSLRHSYAT 259

Query: 296 ISADAGATAHELMATYGWKTVDQAETYT 323
              D GA    +    G  +V   + YT
Sbjct: 260 HLLDGGADVRVVQELLGHSSVTTTQIYT 287


>gi|229180107|ref|ZP_04307451.1| Tyrosine recombinase xerC [Bacillus cereus 172560W]
 gi|228603316|gb|EEK60793.1| Tyrosine recombinase xerC [Bacillus cereus 172560W]
          Length = 299

 Score =  126 bits (316), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 43/272 (15%), Positives = 99/272 (36%), Gaps = 26/272 (9%)

Query: 85  GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIR---SGVESRKHTPSSAIQFLT 138
            + +  +  S+++  +  +   ++ G   +  +T   +R   + +   K    S  + ++
Sbjct: 18  RNYSKYTIASYQNDLEHFVQFMKREGISSFLDVTYADVRLYLTMLHDEKLARKSVARKVS 77

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194
           S+R L+++ +R+ Y   NP      PK++    +    E++++           G + + 
Sbjct: 78  SLRSLYRFLMREGYRKDNPFALASLPKKELSIPKFLYAEELEELFEVSDTETPLGQRNQA 137

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE------------LPDGF 241
             E +  +G+R S+     +  +   + +I    K      +             + +G 
Sbjct: 138 LLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQRYIPFGSYAQDSLITYIENGR 197

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
            +L+  T       F+N     + +            KA +    S H +R   AT   D
Sbjct: 198 KQLVNKTDEDSHMVFLNAKGTPLTSRGVRYVLNELIKKASLTMRISPHMLRHTFATHMLD 257

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            GA    +    G + +   + YT    + RL
Sbjct: 258 EGADLRTVQELLGHENLSTTQIYTH-VSKERL 288


>gi|288959362|ref|YP_003449703.1| phage integrase [Azospirillum sp. B510]
 gi|288911670|dbj|BAI73159.1| phage integrase [Azospirillum sp. B510]
          Length = 418

 Score =  126 bits (316), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 67/350 (19%), Positives = 110/350 (31%), Gaps = 28/350 (8%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRI--------RLPYPHESTFIPAYMSALTGSTPKR 58
           L  FV K      K      +  GR          R   P            L  S  + 
Sbjct: 29  LKGFVLKVTPSGAKTYLVVYRMGGRDTPKQKVTIGRHGSPWTPDKARTEAEKLLASVKRG 88

Query: 59  EYINSPRKKPT----TLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRK 113
               + +K  T    T+  L  +Y           ++   F    ++ I    G     K
Sbjct: 89  TDPAAEKKARTKRGATVADLADDYLTQHVDVKNKPSTATGFRRLVEKEIKPPLGKLQVDK 148

Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTEGI 171
           +T   I       + TP  A Q L  +  +F  A          NPC  +ER +      
Sbjct: 149 VTRADIAKLHHDMRDTPRQANQTLAVLSKMFSLAEVWGLRPDGTNPCKKIERYRENKRE- 207

Query: 172 RPWTKEDMQQFKSFWSE-------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
           R  +  ++++     +E             A   LL +G R  +        + +    I
Sbjct: 208 RFLSVPEVERLGKALAELGETMEVHETILSAIRLLLLTGCRVGEVLALRWVDVVDGAVLI 267

Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKETFFI--NNDKQKMNATQFSIWFKAKATKAGV 282
           +  K G  +   +       L+  P   E       + +  +  T  S  ++   +KAG+
Sbjct: 268 RDAKAGGRVH-PIGALAQAFLSELPRESEWVLPAPRSPRNPLPNTTISHGWEVVRSKAGL 326

Query: 283 -NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT-KGADRIR 330
            +   H +R    T +  AGA A  +    G KT+     Y  + AD IR
Sbjct: 327 EDVRLHDLRHTVGTYAGQAGANAFLVRDKLGHKTLAMTGRYVNRDADPIR 376


>gi|91216360|ref|ZP_01253327.1| putative tyrosine recombinase [Psychroflexus torquis ATCC 700755]
 gi|91185498|gb|EAS71874.1| putative tyrosine recombinase [Psychroflexus torquis ATCC 700755]
          Length = 298

 Score =  126 bits (316), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 45/262 (17%), Positives = 88/262 (33%), Gaps = 24/262 (9%)

Query: 85  GSLAVNSRISFE----SYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLT 138
             LA N+  ++        + I   +       +  + ++S + S  +     S  + ++
Sbjct: 18  RGLADNTVQNYRLDILKLANYISEYNATLTPELVDEETLQSFIYSISKVINERSQARLIS 77

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194
            ++  F + + ++Y   NP   +E P+         + +++ Q          +G + + 
Sbjct: 78  GLKSFFDYLIFEDYRKTNPLELIESPRLGRRLPDTLSTDEIDQLVEAIDLSHLQGHRNKA 137

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELP-----------DGFM 242
             E L   GLR S+     +  L      IK   K      V +            + F 
Sbjct: 138 IIETLYGCGLRVSELVELKISDLFFEKGFIKVIGKGNKERLVPINTYTQKFISIYKEEFR 197

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
             L      K+  F+N    ++         K  A K  + K  S H  R   AT   + 
Sbjct: 198 IHLNQQSEFKDILFLNRRGAQLTRAMIFTIVKQLAKKINLQKNISPHTFRHSFATHLLEN 257

Query: 301 GATAHELMATYGWKTVDQAETY 322
           GA    +    G +++   E Y
Sbjct: 258 GANLRVIQQMLGHESITTTEIY 279


>gi|21230129|ref|NP_636046.1| site-specific tyrosine recombinase XerD [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66769880|ref|YP_244642.1| site-specific tyrosine recombinase XerD [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|188993095|ref|YP_001905105.1| site-specific tyrosine recombinase XerD [Xanthomonas campestris pv.
           campestris str. B100]
 gi|34222916|sp|Q8PCQ9|XERD_XANCP RecName: Full=Tyrosine recombinase xerD
 gi|21111659|gb|AAM39970.1| integrase/recombinase [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66575212|gb|AAY50622.1| integrase/recombinase [Xanthomonas campestris pv. campestris str.
           8004]
 gi|167734855|emb|CAP53066.1| tyrosine recombinase [Xanthomonas campestris pv. campestris]
          Length = 323

 Score =  126 bits (316), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 47/273 (17%), Positives = 93/273 (34%), Gaps = 29/273 (10%)

Query: 85  GSLAVNSRISFESYFDQIIR-----KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
             +A  +  S+    + + R       G     +             ++ P S  + L++
Sbjct: 38  QGVARQTLDSYRRDLEGLARWRDGAGGGLQGADRSALFDYLRWRTEARYAPRSNARLLST 97

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLA 195
           +R  +   +R    + +P   ++ P+      +  T+  +    +    G+    + R  
Sbjct: 98  LRGFYALCLRDGVRSDDPTALLDPPRLPRSLPKALTESQIDALLAAPEIGTPLGLRDRAM 157

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLA-----MTP 249
            E +  +GLR S+        +      ++ T K      V L +     L        P
Sbjct: 158 LELMYAAGLRVSELVTLPAVAINLRQGVLRVTGKGSKERLVPLGEESQHWLERYLETARP 217

Query: 250 I-----------GKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSAT 295
                       G+   FI+  ++ ++  QF    K  A  AG++    S HG+R   AT
Sbjct: 218 TLSERKAVPAVDGQVPLFIDAARRPLSRQQFWGLVKRYAAVAGIDPDTVSPHGLRHSFAT 277

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADR 328
              + GA    L    G  ++   + YT  A +
Sbjct: 278 HLLNHGADLRALQMLLGHSSLSTTQIYTLVARQ 310


>gi|75763959|ref|ZP_00743586.1| Integrase/recombinase (XerD/RipX family) [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|74488552|gb|EAO52141.1| Integrase/recombinase (XerD/RipX family) [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
          Length = 302

 Score =  126 bits (316), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 43/272 (15%), Positives = 97/272 (35%), Gaps = 26/272 (9%)

Query: 85  GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLT 138
            + +  +  S+++  +  +    + G   +  +T   +R  +      K    S  + ++
Sbjct: 21  RNYSKYTIASYQNDLEHFVQFMEREGISSFLDVTYADVRLYLTTLHDEKLARKSVARKVS 80

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194
           S+R L+++ +R+ Y   NP      PK++    +    E++++           G + + 
Sbjct: 81  SLRSLYRFLMREGYRKDNPFALASLPKKELSIPKFLYAEELEELFEVSDTETPLGQRNQA 140

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE------------LPDGF 241
             E +  +G+R S+     +  +   + +I    K      +             + +G 
Sbjct: 141 LLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQRYIPFGSYAQDSLITYIENGR 200

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
            +L+  T       F+N     + +            KA +    S H +R   AT   D
Sbjct: 201 KQLVNKTDEDSRMVFLNAKGTPLTSRGVRYVLNELIKKASLTMRISPHMLRHTFATHMLD 260

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            GA    +    G + +   + YT    + RL
Sbjct: 261 EGADLRTVQELLGHENLSTTQIYTH-VSKERL 291


>gi|313205824|ref|YP_004045001.1| integrase family protein [Riemerella anatipestifer DSM 15868]
 gi|312445140|gb|ADQ81495.1| integrase family protein [Riemerella anatipestifer DSM 15868]
 gi|315022781|gb|EFT35805.1| Probable integrase [Riemerella anatipestifer RA-YM]
 gi|325336737|gb|ADZ13011.1| Integrase, catalytic core, phage [Riemerella anatipestifer RA-GD]
          Length = 358

 Score =  126 bits (316), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 40/261 (15%), Positives = 97/261 (37%), Gaps = 18/261 (6%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHTPS 131
             +++       + N+  ++   F Q++    DF   +++ + +RS      E+ K + +
Sbjct: 87  ELFQEHLKLKGYSRNTLRTYAVEFAQLLYVLKDFPVDELSEERLRSYFLYCFENLKLSEA 146

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
                + +++  F+ A+ ++ +  +    + RPK+K +  +   K+ + +     +   +
Sbjct: 147 EINSRINAIKFYFEQALHRKKMFFD----IPRPKKKKQLPKSLNKKQILKIFEVTT-NLK 201

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIITVE--LPDGFMKLL 245
            R   +     GLR S+     ++ + +    ++      K   ++ +   +        
Sbjct: 202 HRCMLQLCYGMGLRVSEIVNLKLEDICSETMRVRIENAKGKKDRMVPLPESILPELRAYY 261

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGAT 303
                 K   F        +       FK    KAG+NK+   HG+R   AT   + G  
Sbjct: 262 REYKPKK-YLFEGQYGGMYSVRSVQSVFKTAMRKAGINKTVGIHGLRHSYATHLLEMGTD 320

Query: 304 AHELMATYGWKTVDQAETYTK 324
              +    G   +   + YT+
Sbjct: 321 IRYIQEFLGHNNIKTTQIYTQ 341


>gi|313771918|gb|EFS37884.1| tyrosine recombinase XerD [Propionibacterium acnes HL074PA1]
          Length = 306

 Score =  126 bits (316), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 41/268 (15%), Positives = 89/268 (33%), Gaps = 29/268 (10%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDF------DYRKITTKHIRSGVESRKHTPSSAIQFLT 138
             L+ N+  ++     +     G        +  ++  +  R  ++     P+S  + + 
Sbjct: 20  RGLSDNTVQAYRRDLLRYQEYLGSRGIGSLAEVTRVDVEEFRRHLDHIGLAPASVTRCVV 79

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRL 194
           ++R L ++AV    +  +    +    R     +  + + ++   +       EG +   
Sbjct: 80  AVRNLHRFAVGSGQLQADVTAGMSPGTRSRRLPKALSMDQVESLLAAPDTSTVEGLRDAA 139

Query: 195 AFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKT-QKTGTIITVELPDGFMKLLAMTP 249
             E L  +G R S+ C   V  +     +    ++   K      V L     K +    
Sbjct: 140 LLELLYGTGARVSEVCALDVDDIRPVLDDPDLGLRLIGKGDKERIVPLGSYAAKAVDAWL 199

Query: 250 I-----------GKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSAT 295
           I           G+    +N   ++++        +     AG++    S H +R   AT
Sbjct: 200 IRGRPAWAEIGNGEHALLLNTRGRRLSRQSAWAVIRRAGEAAGLDVEHLSPHSLRHSYAT 259

Query: 296 ISADAGATAHELMATYGWKTVDQAETYT 323
              D GA    +    G  +V   + YT
Sbjct: 260 HLLDGGADIRVVQELLGHSSVTTTQIYT 287


>gi|71274688|ref|ZP_00650976.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella
           fastidiosa Dixon]
 gi|71276271|ref|ZP_00652549.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella
           fastidiosa Dixon]
 gi|71900963|ref|ZP_00683076.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella
           fastidiosa Ann-1]
 gi|71902016|ref|ZP_00684061.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella
           fastidiosa Ann-1]
 gi|170730075|ref|YP_001775508.1| phage-related integrase [Xylella fastidiosa M12]
 gi|71162879|gb|EAO12603.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella
           fastidiosa Dixon]
 gi|71164420|gb|EAO14134.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella
           fastidiosa Dixon]
 gi|71728216|gb|EAO30402.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella
           fastidiosa Ann-1]
 gi|71729268|gb|EAO31386.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella
           fastidiosa Ann-1]
 gi|167964868|gb|ACA11878.1| phage-related integrase [Xylella fastidiosa M12]
          Length = 339

 Score =  126 bits (316), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 63/333 (18%), Positives = 116/333 (34%), Gaps = 28/333 (8%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
           +P F  + + + G + YY+  G   R   P          Y  A+     + E+      
Sbjct: 11  IPRFRVRPQ-KSGVVYYYYDHGGKPRKETPLG------RDYGLAIQ-RWAELEHAQITPA 62

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVE 124
              T + +   YR      + A N++     Y + +++   D    +  I   +IR  ++
Sbjct: 63  IAVTFRHVAERYRAEVI-PTKAYNTQRMHHIYLNYLLKFFDDPPAPFESIKPVNIRQYLD 121

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVA-INPCLSVERPKRKTEGIRPWTKEDMQQFK 183
            R     SA + +     L+ WA  +      NPC  + R K +   +      D   ++
Sbjct: 122 WRTSKV-SANREVALFSHLWNWARSKGITDLPNPCGGIRRNKERGRDVYI----DDTTYR 176

Query: 184 SFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
           + +    Q  R A +    +G R SD      +H+ N    I   KTG  + + +     
Sbjct: 177 AVYQAADQTLRDAMDLAYLTGQRVSDVVNMDERHIVNGALEICQAKTGVKLAIAITGELA 236

Query: 243 KLLAMTPIGKE-------TFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKF 292
            L+      K           ++     +N  + +  F+     AG+ K       +R  
Sbjct: 237 VLIKRILARKRGMKLRSTRLIVDEKGLGLNWKKLAYRFRKVRAAAGIAKEVFQFRDLRAK 296

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKG 325
           +AT  AD      +  A  G  +V   E Y + 
Sbjct: 297 AATDKADLAGDMRQAQAQLGHASVTMTEHYVRK 329


>gi|289432900|ref|YP_003462773.1| tyrosine recombinase XerD [Dehalococcoides sp. GT]
 gi|288946620|gb|ADC74317.1| tyrosine recombinase XerD [Dehalococcoides sp. GT]
          Length = 302

 Score =  126 bits (316), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 41/283 (14%), Positives = 97/283 (34%), Gaps = 35/283 (12%)

Query: 85  GSLAVNSRISFESYFDQI-------IRKSGDFD-YRKITTKHIRSGVESRKHT---PSSA 133
              + N+  ++E+   Q+         KSG    +   T + + + +   K      ++ 
Sbjct: 16  KGFSENTSEAYENDLRQMTTFADKEAAKSGKIPGWDNFTRQTMLAYMLDLKERNYAITTV 75

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-----SE 188
           ++ + + +  F + V +  +  NP  ++  PK         +   ++   +       SE
Sbjct: 76  VRKMAAAKSFFNFMVAEGKLKENPTENISTPKVGKPLPDAISISQVRALLNQPVKSGSSE 135

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLA- 246
             + +   E L  SG+R ++     +  +      ++   K      + +     + +  
Sbjct: 136 AKRDKAMLELLYASGMRVTELVNLNMLDVDLKEGFVRCFGKGRKERMIPIYPQAAQSVQE 195

Query: 247 ---------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSAT 295
                    +    ++  F+N    ++         KA A +AG++   + H +R   AT
Sbjct: 196 YLNEIRPNLVRAEAEKALFLNRRGDRLTRQGLWQILKAYAREAGLDDVVTPHTLRHSFAT 255

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338
                GA    +    G   +   + YT       L  ++ RR
Sbjct: 256 HMLSGGADLRSVQELLGHANISTTQIYTH------LTSEHIRR 292


>gi|322421383|ref|YP_004200606.1| tyrosine recombinase XerC [Geobacter sp. M18]
 gi|320127770|gb|ADW15330.1| tyrosine recombinase XerC [Geobacter sp. M18]
          Length = 292

 Score =  126 bits (316), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 45/258 (17%), Positives = 96/258 (37%), Gaps = 18/258 (6%)

Query: 85  GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTS 139
            +++ ++  ++ S  +Q    + + G+    ++    IR  +    + H  SS  + L++
Sbjct: 16  RNVSPHTLAAYRSDLEQFASSLSRHGEPLPEQVDHLAIRRYLAQLHKGHAKSSIGRKLSA 75

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKSFWSEGSQPRLA 195
           +R LF++ +R+  +  NP   V  PK++         + +    +          + R  
Sbjct: 76  IRALFRFLLREGRLEKNPAELVSTPKKEKRLPFHLNIDQVSALVEAPAGAAGLPLRDRAV 135

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM------T 248
            E L   G+R S+     V  L  +    +   K G    V +     K L+        
Sbjct: 136 LETLYSCGIRVSELTGMNVGDLDLHQALARVMGKGGKERIVPVGSFARKALSAYLEERGD 195

Query: 249 PIGKETFFINNDKQKMNATQFSIWF-KAKATKAGVNK-SAHGVRKFSATISADAGATAHE 306
           P   +   +N+   ++     +    +     A + K S H +R   AT   + GA    
Sbjct: 196 PPPCDPLILNSRGGRLTRRSVARIVDRHMLMIAAMRKVSPHTLRHTFATHLLEGGADLRC 255

Query: 307 LMATYGWKTVDQAETYTK 324
           +    G  ++   + YT+
Sbjct: 256 IQELLGHASLSTTQKYTQ 273


>gi|188586142|ref|YP_001917687.1| integrase family protein [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179350829|gb|ACB85099.1| integrase family protein [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 279

 Score =  126 bits (316), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 41/258 (15%), Positives = 97/258 (37%), Gaps = 11/258 (4%)

Query: 88  AVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFK 145
           + ++  ++E Y  + +   K+   +          +  E + +   +    + ++   F 
Sbjct: 19  SASTLETYERYIRKFLMSWKNDLSEVTDDDIDDFLNEYEEKGYNSRTIHVIIAALHDFFS 78

Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLR 205
               ++Y+++ P + VE P  + +  +P ++  + + K+   +  + R   E L ++G+R
Sbjct: 79  HLKYKKYISVIPTVDVEIPNHEKKLPKPLSEIKIIKLKNEAKDHLRDRAIIEVLHWTGVR 138

Query: 206 CSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELP----DGFMKLLAMTPIGKETFFINN 259
            S+     ++ +        I+  K      V +        ++ L          FI  
Sbjct: 139 VSELINIRIEDIWWDTREIWIRKGKGLKERNVIINYICKQYLIEYLDTRSDDIPYLFITK 198

Query: 260 DKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVD 317
            K+       +      A KAG+  N + H  R    T   + GA    +    G + + 
Sbjct: 199 RKRPFTRQGVNKLLNKYAIKAGIKENVTPHMFRHTFITDLINKGAEEGVVADLAGHEDIK 258

Query: 318 QAETYTKGA-DRIRLGIK 334
           + + YT+ A  R +L  +
Sbjct: 259 RLKDYTEVARKRKKLEYE 276


>gi|330992094|ref|ZP_08316043.1| Shufflon-specific DNA recombinase [Gluconacetobacter sp. SXCC-1]
 gi|329761115|gb|EGG77610.1| Shufflon-specific DNA recombinase [Gluconacetobacter sp. SXCC-1]
          Length = 393

 Score =  126 bits (316), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 59/320 (18%), Positives = 115/320 (35%), Gaps = 18/320 (5%)

Query: 21  IIYYFRKGHGRRIRL--PYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT---LKWLI 75
           +++Y   G  RR  +    P  +         +          N+ R +  T   +    
Sbjct: 46  VVHYRANGRFRRYTIGHHGPWTADKARDEAIKILARVKDGNDPNTERGEERTSPTISQFC 105

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
             + +      L   ++  ++   D  II+K G      +T   + +   + +H P  A 
Sbjct: 106 KTFIERHVKTHLKSTTQAEYQRAIDLFIIKKIGSRMVATLTHSDVVAFHHAYRHIPYQAN 165

Query: 135 QFLTSMRVLFKWAVRQEYVAIN--PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
           + L  +  +F  A+       N  PC  V+R K +    R  T E+ Q+      +G   
Sbjct: 166 RTLGVLSKMFSLAILWGVRTDNVNPCRGVKRYKEQKRE-RYLTTEEHQRLGKALDDGRSA 224

Query: 193 RL----AFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKLL- 245
                 AF+ LL +G R  +  R   +++     I  +   K G   TV+L +  + LL 
Sbjct: 225 MPEAVNAFQLLLLTGCRLREIQRLKWEYVFLDEGIIRLPDSKNGAR-TVQLGESAIGLLG 283

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATA 304
            +T +    + I   K   + T     ++    +AG+ +   H +R   A+ + + G   
Sbjct: 284 DITRVEGNPYVITGRKDGGHLTDLEKPWRRIRKEAGLHDVRIHDLRHSFASDALELGEDL 343

Query: 305 HELMATYGWKTVDQAETYTK 324
             +    G + +     Y  
Sbjct: 344 VMIGKLLGHRDLKSTARYAH 363


>gi|237717383|ref|ZP_04547864.1| integrase [Bacteroides sp. D1]
 gi|229443366|gb|EEO49157.1| integrase [Bacteroides sp. D1]
          Length = 292

 Score =  126 bits (316), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 50/276 (18%), Positives = 105/276 (38%), Gaps = 24/276 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIR----KSGDFDYRKITTKHIRSGV---ES 125
           +I  +     +  + +  + +++     Q+      + G F+  ++  + IR  +     
Sbjct: 1   MIESFLDYLQYERNYSEKTVLAYGEDIKQLQEFAQEEYGKFNPLEVEAELIREWIVSLMD 60

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           + +T +S  + L+S+R  +K+ +RQ    I+P   ++ PK K        + +M +    
Sbjct: 61  KGYTSTSVNRKLSSLRTFYKYLLRQGETTIDPLRKIKGPKNKKPLPVFLKENEMNRLLDE 120

Query: 186 WS-----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPD 239
                  +G + RL  E    +G+R S+      + +  +   +K T K      +   D
Sbjct: 121 TDFGEGFKGCRDRLIIEMFYATGMRLSELIGLDNKDVDFSASLLKVTGKRNKQRLIPFGD 180

Query: 240 GFMKLL--------AMTPIGKETFFINNDKQKMNATQFSIWFKA-KATKAGVNK-SAHGV 289
              +L+           P   E FFI  + +++         K   +  A + K S H +
Sbjct: 181 ELQELMLEYINVRNETIPERSEAFFIRENGERLYKNLVYNLVKRNLSKVATLKKKSPHVL 240

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           R   AT   +  A    +    G +++   E YT  
Sbjct: 241 RHTFATTMLNNEAELGAVKELLGHESITTTEIYTHA 276


>gi|163941569|ref|YP_001646453.1| site-specific tyrosine recombinase XerC [Bacillus
           weihenstephanensis KBAB4]
 gi|229013014|ref|ZP_04170179.1| Tyrosine recombinase xerC [Bacillus mycoides DSM 2048]
 gi|229134638|ref|ZP_04263448.1| Tyrosine recombinase xerC [Bacillus cereus BDRD-ST196]
 gi|229168570|ref|ZP_04296293.1| Tyrosine recombinase xerC [Bacillus cereus AH621]
 gi|163863766|gb|ABY44825.1| tyrosine recombinase XerC [Bacillus weihenstephanensis KBAB4]
 gi|228614976|gb|EEK72078.1| Tyrosine recombinase xerC [Bacillus cereus AH621]
 gi|228648899|gb|EEL04924.1| Tyrosine recombinase xerC [Bacillus cereus BDRD-ST196]
 gi|228748268|gb|EEL98128.1| Tyrosine recombinase xerC [Bacillus mycoides DSM 2048]
          Length = 301

 Score =  126 bits (316), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 43/272 (15%), Positives = 97/272 (35%), Gaps = 26/272 (9%)

Query: 85  GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLT 138
            + +  +  S+++  +  +    + G   +  +T   +R  +     +K    S  + ++
Sbjct: 20  RNYSKYTIASYQNDLEHFVQFMEREGISSFLDVTYADVRLYLTTLHDQKLARKSVARKVS 79

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194
           S+R L+++ +R+ Y   NP      PK++    +    E++++           G + + 
Sbjct: 80  SLRSLYRFLMREGYQKDNPFALASLPKKELSIPKFLYAEELEELFEVSDTGAPLGQRNQA 139

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE------------LPDGF 241
             E +  +G+R S+     +  +   + +I    K      +             + +G 
Sbjct: 140 LLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQRYIPFGSYAQDALITYIENGR 199

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
            +L   T       F+N   + +              KA +    S H +R   AT   D
Sbjct: 200 KQLAQKTEEQSHMVFLNAKGKPLTDQGVRYVLNELIKKASLTMRISPHMLRHTFATHMLD 259

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            GA    +    G + +   + YT    + RL
Sbjct: 260 EGADLRTVQELLGHENLSTTQIYTH-VSKERL 290


>gi|83955532|ref|ZP_00964163.1| tyrosine recombinase XerD [Sulfitobacter sp. NAS-14.1]
 gi|83840176|gb|EAP79351.1| tyrosine recombinase XerD [Sulfitobacter sp. NAS-14.1]
          Length = 324

 Score =  126 bits (316), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 47/286 (16%), Positives = 102/286 (35%), Gaps = 32/286 (11%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGV---ES 125
           L W+ +     A     A N+++++                D+  +  K I + +   ++
Sbjct: 6   LHWISTFLEAQAAELGAATNTQLAYGRDLKDFDSFLARRALDFVTVGRKDIEAYLVWCDA 65

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +    S+  + L++++ L+++A  + +   NP + +  P +     +  +++++ Q    
Sbjct: 66  QGLAKSTRARRLSAIKQLYRFAFEEGWRTDNPAIQIAGPGQDKRLPKVLSEDEVDQLLDA 125

Query: 186 W-------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVEL 237
                   S+  +     E L  +G+R S+     V   + +    +   K G    V L
Sbjct: 126 ARHSGRNTSDQLRNTCLMELLYATGMRVSELVSLRVNAARGDPRLLLIMGKGGKERLVPL 185

Query: 238 PDGFMKLLAMTPIGKET--------------FFINNDKQK--MNATQFSIWFKAKATKAG 281
            D   + LA   + ++               +   +      +   +F +  K  A  AG
Sbjct: 186 SDPSREALAAWLVQRDNTDEAAQAKGKPASIYLFPSRGSAGYLTRHRFYLLIKEFALTAG 245

Query: 282 VN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           V+    + H +R   AT     GA    +    G   V   E YT 
Sbjct: 246 VDPSKVTPHTLRHAFATHLLANGADLRAIQTMLGHADVATTEIYTH 291


>gi|283852933|ref|ZP_06370193.1| tyrosine recombinase XerD [Desulfovibrio sp. FW1012B]
 gi|283571691|gb|EFC19691.1| tyrosine recombinase XerD [Desulfovibrio sp. FW1012B]
          Length = 309

 Score =  126 bits (316), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 81/226 (35%), Gaps = 15/226 (6%)

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           + +R     S  + L+++R  F +A  ++++  +P   +E PK         ++ED+ + 
Sbjct: 70  LRTRGLQSRSLARHLSALRGFFAFAAAEKWLPESPAALIENPKLPRLLPDVLSREDVARL 129

Query: 183 K----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-EL 237
                +    G + R   E L  +GLR S+     +         ++    G    +  +
Sbjct: 130 LDAPDTATPLGYRDRTMLELLYAAGLRVSELVGLTLGDYDAQAGLLRVFGKGAKERLTPI 189

Query: 238 PDGFMKLLA--------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAH 287
                + L+             ++  F+N   Q ++        KA A  AGV    S H
Sbjct: 190 HALAREFLSTYILTMRGAFHPREQFIFLNRSGQGLSRQAVWKKIKAHALAAGVSTRISPH 249

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
            +R   AT   + GA    +    G   +   E YT       L +
Sbjct: 250 SLRHSFATHLLEGGADLRTVQMLLGHADISATEIYTHVQAGRLLAV 295


>gi|254480874|ref|ZP_05094120.1| site-specific recombinase, phage integrase family [marine gamma
           proteobacterium HTCC2148]
 gi|214038669|gb|EEB79330.1| site-specific recombinase, phage integrase family [marine gamma
           proteobacterium HTCC2148]
          Length = 392

 Score =  126 bits (316), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 58/349 (16%), Positives = 117/349 (33%), Gaps = 20/349 (5%)

Query: 10  FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
           +  + ++  GK   Y   G    I L    +      ++ A        +     +K+  
Sbjct: 47  YRLRYKSEGGKT-AYVTIGRSCDISLAGARK---RARHLKAQIELGADPQAEAKAKKQVL 102

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH- 128
           T     +++    H      + +   E +  +I    G+    KIT   ++    S    
Sbjct: 103 TWNAFFTDHYL-PHVKQHKRSWKNDLEMHNLRISAFIGNKRLNKITRSEVQRFHASLVEE 161

Query: 129 --TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             +P++A   L  +R     AV  E +  NP   V+   +  +  R  + E+MQ+     
Sbjct: 162 DLSPATADHHLKLIRQALNLAVDWELLEANPVAKVKLFNQDNQVERYLSDEEMQRLLKVL 221

Query: 187 SEGSQPRLA--FEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDG 240
              S   +     FLL +G R S++  A    +       +      K+    +V L D 
Sbjct: 222 KTDSNRVVCNVILFLLSTGARVSEALSAEWSDIDRKNRVWVIQATNSKSKKKRSVPLNDV 281

Query: 241 FMKLLAMTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISA 298
            + +L       +    F+             +WF+ ++     +   H +R   A++  
Sbjct: 282 AIGVLDALDTEGKHDRLFVGKRGPLTTIN--KVWFRIRSEAGLEDYRIHDLRHSYASLLV 339

Query: 299 DAGATAHELMATYGWKTVDQAETYTK--GADRIRLGIKNSRRISSVVDS 345
           +AG +  E+    G         Y         R     S +I+  +++
Sbjct: 340 NAGHSLFEVQQALGHSDPKVTMRYAHLSKESLQRAANSASDKITEAMEA 388


>gi|312135537|ref|YP_004002875.1| tyrosine recombinase xerd [Caldicellulosiruptor owensensis OL]
 gi|311775588|gb|ADQ05075.1| tyrosine recombinase XerD [Caldicellulosiruptor owensensis OL]
          Length = 291

 Score =  126 bits (316), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 39/280 (13%), Positives = 100/280 (35%), Gaps = 25/280 (8%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK-----HIRSGVES 125
           ++      ++   +   + N+  S+     + I    +   +   T           ++ 
Sbjct: 4   VEAFCDHLQRQNRF---SQNTISSYLRDAKKYIEFLDNMKIKLENTSQATLIAYIISMQK 60

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
              + S+  + + S++V + +   Q+ + I   + +E PK +    +  T++++++  S 
Sbjct: 61  SGKSNSTIARAIVSLKVFYDFLKTQKIIDIG-KIEIEPPKLEKNPPQILTRDEVEKLLSC 119

Query: 186 WSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241
             E    G + +   E L  +G++ S+     +  +      I  +       + +    
Sbjct: 120 PKEDDIKGIRDKAMLELLYATGIKVSELINLNLDDINLEHGYIICKNKKRDRVIPIGSYA 179

Query: 242 MKLLA----------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289
           +  +                +E  F+N + ++M    F    K  A  A ++K  + H +
Sbjct: 180 ISAVEKYLRYSRPYLAKSKDEEALFLNFNGERMTRQGFWKIVKFYAQSAEIDKEITPHVL 239

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           R   AT   + GA    +    G   +   + Y + A+  
Sbjct: 240 RHSFATHLIENGADVRAVQQMLGHADISTTQRYLQVANVK 279


>gi|89054975|ref|YP_510426.1| phage integrase [Jannaschia sp. CCS1]
 gi|88864524|gb|ABD55401.1| phage integrase [Jannaschia sp. CCS1]
          Length = 304

 Score =  126 bits (316), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 40/258 (15%), Positives = 87/258 (33%), Gaps = 21/258 (8%)

Query: 93  ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEY 152
              +     + +  G     +   +   +G+E++    ++  + L+S++ L+++A  + +
Sbjct: 34  RDLKDAMMSVRKSGGFAGADRAALEAYIAGLEAQGLAAATRARRLSSLKQLYRFAHEEGW 93

Query: 153 VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-------WSEGSQPRLAFEFLLYSGLR 205
              NP L +  P R  +     + E++              ++  +     + L  +GLR
Sbjct: 94  REDNPTLQITGPARTRKLPGTLSLEEVDALLEASATYGRNDADRLRNHCLMQILYATGLR 153

Query: 206 CSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKLLAMT----------PIGKET 254
            ++     +  L+ +    +   K G    V L       +A            P     
Sbjct: 154 VTELVSLPITALRGDPNMLLVLGKGGKERMVPLSPPARTAMAAWLDHLDATQEEPRSLFA 213

Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATY 311
           F  +     +   +F    K  +  AG++    + H +R   AT     GA    +    
Sbjct: 214 FPSHGKSGHLTRVRFFTLIKELSASAGIDPARVTPHTLRHAFATHLLQNGADLRAIQTLL 273

Query: 312 GWKTVDQAETYTKGADRI 329
           G   +   E YT   D  
Sbjct: 274 GHADIATTEIYTHILDER 291


>gi|73748904|ref|YP_308143.1| tyrosine recombinase XerD [Dehalococcoides sp. CBDB1]
 gi|147669665|ref|YP_001214483.1| tyrosine recombinase XerD subunit [Dehalococcoides sp. BAV1]
 gi|73660620|emb|CAI83227.1| tyrosine recombinase XerD [Dehalococcoides sp. CBDB1]
 gi|146270613|gb|ABQ17605.1| tyrosine recombinase XerD subunit [Dehalococcoides sp. BAV1]
          Length = 302

 Score =  126 bits (316), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 41/283 (14%), Positives = 97/283 (34%), Gaps = 35/283 (12%)

Query: 85  GSLAVNSRISFESYFDQI-------IRKSGDFD-YRKITTKHIRSGVESRKHT---PSSA 133
              + N+  ++E+   Q+         KSG    +   T + + + +   K      ++ 
Sbjct: 16  KGFSENTSEAYENDLRQMTTFADKEAAKSGKIPGWDNFTRQTMLAYMLDLKERNYAITTV 75

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-----SE 188
           ++ + + +  F + V +  +  NP  ++  PK         +   ++   +       SE
Sbjct: 76  VRKMAAAKSFFNFMVAEGKLKENPTENISTPKVGKPLPDAISISQVRALLNQPIKSGSSE 135

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLA- 246
             + +   E L  SG+R ++     +  +      ++   K      + +     + +  
Sbjct: 136 AKRDKAMLELLYASGMRVTELVNLNMLDVDLKEGFVRCFGKGRKERMIPIYPQAAQSVQE 195

Query: 247 ---------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSAT 295
                    +    ++  F+N    ++         KA A +AG++   + H +R   AT
Sbjct: 196 YLNEIRPNLVRAEAEKALFLNRRGDRLTRQGLWQILKAYAREAGLDDVVTPHTLRHSFAT 255

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338
                GA    +    G   +   + YT       L  ++ RR
Sbjct: 256 HMLSGGADLRSVQELLGHANISTTQIYTH------LTSEHIRR 292


>gi|237748814|ref|ZP_04579294.1| site specific integrase/recombinase [Oxalobacter formigenes OXCC13]
 gi|229380176|gb|EEO30267.1| site specific integrase/recombinase [Oxalobacter formigenes OXCC13]
          Length = 317

 Score =  126 bits (316), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 47/289 (16%), Positives = 105/289 (36%), Gaps = 41/289 (14%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG---VESRKHTPSSAIQFLTSMR 141
             L+  + I++    +++I  +       +++  IR     + ++   P S  + L++ R
Sbjct: 13  RQLSDQTVINYRRDLEELIELANQTKLATLSSSDIRRFTSKLHAKGLNPRSISRKLSAWR 72

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ---------- 191
             ++W + +   + NP   +  PK+     +  + +D  +  +  SE             
Sbjct: 73  GFYRWLIEENLTSANPVEDIHAPKKNKPLPKALSVDDAVRVVASTSEKEAVEQDRATLLC 132

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQN------NIFSIK------TQKTGTIITVELPD 239
               FE L  SGLR S+     +  +++      +  +++      T K      V + D
Sbjct: 133 NHAMFELLYSSGLRVSELTSLDIHAIKDTGYRSASWINLEEKEVTVTGKGNKTRIVPIGD 192

Query: 240 GFMKLLAMTPIGKET-------------FFINNDKQKMNATQFSIWFKAKATKAGVNKS- 285
             +  +    + +ET              FIN+  ++++     +  K+ A   G+  S 
Sbjct: 193 AAVHAIRNWLLTRETLIDPSLQQEHTNALFINSRGRRISPRTVQLRLKSHANALGLPVSV 252

Query: 286 -AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
             H +R   A+    +      +    G  ++   + YT   D  RL  
Sbjct: 253 HPHVLRHSFASHILQSSGDLRAVQEMLGHSSIASTQIYT-ALDFQRLAQ 300


>gi|239948007|ref|ZP_04699760.1| integrase [Rickettsia endosymbiont of Ixodes scapularis]
 gi|239922283|gb|EER22307.1| integrase [Rickettsia endosymbiont of Ixodes scapularis]
          Length = 397

 Score =  126 bits (316), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 54/276 (19%), Positives = 102/276 (36%), Gaps = 15/276 (5%)

Query: 59  EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESY--FDQIIRKSGDFDYRKITT 116
           E  + P  +  T K L  +Y  +        N +   +     D+  +         I  
Sbjct: 99  ELTDLPISEELTFKELFDKYINNYA----KHNIKRWQDRIATMDRQAKHFYSLKISDIQR 154

Query: 117 KHIRSGVESRKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
             I+       +    +A +FL ++  +F  A+  E +  NP   +++ K ++   R  T
Sbjct: 155 ADIQQTFNDLTNVGKYTANRFLETLSSIFNKAIEWELLEKNPVTGIKKHKEQSR-DRYIT 213

Query: 176 KEDMQQFKSFWSEGSQPRLA--FEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGT 231
           KE+  +F     E +   +       LY+G R S+      +++   +  + I   K G 
Sbjct: 214 KEEAPRFFQTLEEETNQLMKDFILISLYTGARKSNVLSMRWENISFIDKTWYISDTKNGE 273

Query: 232 IITVELPDGFMKLL--AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHG 288
             TV L D  +K+L      +  E  F +      +  +    +K    KAG+ N   H 
Sbjct: 274 PHTVVLIDEAIKILQDRKAQVINEWVFPSETSSSGHLQEPKKAWKRICQKAGLKNLRLHD 333

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +R+  A+  A  GA+ + +      K       Y +
Sbjct: 334 LRRTCASWMAINGASQYVIGKALNHKHPRSTAIYAR 369


>gi|28199031|ref|NP_779345.1| phage-related integrase [Xylella fastidiosa Temecula1]
 gi|182681754|ref|YP_001829914.1| integrase family protein [Xylella fastidiosa M23]
 gi|28057129|gb|AAO28994.1| phage-related integrase [Xylella fastidiosa Temecula1]
 gi|182631864|gb|ACB92640.1| integrase family protein [Xylella fastidiosa M23]
 gi|307580183|gb|ADN64152.1| integrase family protein [Xylella fastidiosa subsp. fastidiosa
           GB514]
          Length = 339

 Score =  126 bits (316), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 63/333 (18%), Positives = 116/333 (34%), Gaps = 28/333 (8%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
           +P F  + + + G + YY+  G   R   P          Y  A+     + E+      
Sbjct: 11  IPRFRVRPQ-KSGVVYYYYDHGGKPRKETPLG------RDYGLAI-KRWAELEHAQITPA 62

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVE 124
              T + +   YR      + A N++     Y + +++   D    +  I   +IR  ++
Sbjct: 63  IAVTFRHVAERYRAEVI-PTKAYNTQRMHHVYLNYLLQFFDDPPAPFESIKPVNIRQYLD 121

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVA-INPCLSVERPKRKTEGIRPWTKEDMQQFK 183
            R     SA + +     L+ WA  +      NPC  + R K +   +      D   ++
Sbjct: 122 WRPFKV-SANREVALFSHLWNWARSKGITDLPNPCGGIRRNKERGRDVYI----DDTTYR 176

Query: 184 SFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
           + +    Q  R A +    +G R SD      +H+ N    I   KTG  + + +     
Sbjct: 177 AVYQAADQTLRDAMDLAYLTGQRVSDVVSMDERHIVNGALEICQAKTGVKLAIAITGELA 236

Query: 243 KLLAMTPIGKE-------TFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKF 292
            L+      K           ++     +N  + +  F+     AG+ K       +R  
Sbjct: 237 VLIKRIFDRKRGMKLRSTRLIVDEKGLGLNWKKLAYRFRKVRAAAGIAKEVFQFRDLRAK 296

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKG 325
           +AT  AD      +  A  G  +V   E Y + 
Sbjct: 297 AATDKADLAGDIRQAQAQLGHTSVVMTEHYVRK 329


>gi|238892411|ref|YP_002917145.1| site-specific tyrosine recombinase XerC [Klebsiella pneumoniae
           NTUH-K2044]
 gi|262040877|ref|ZP_06014103.1| tyrosine recombinase XerC [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|329997490|ref|ZP_08302792.1| tyrosine recombinase XerC [Klebsiella sp. MS 92-3]
 gi|238544727|dbj|BAH61078.1| tyrosine recombinase [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
 gi|259041766|gb|EEW42811.1| tyrosine recombinase XerC [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|328539058|gb|EGF65097.1| tyrosine recombinase XerC [Klebsiella sp. MS 92-3]
          Length = 300

 Score =  126 bits (316), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 41/259 (15%), Positives = 89/259 (34%), Gaps = 19/259 (7%)

Query: 85  GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIR--SGVESRKH-TPSSAIQFLT 138
             L+  + ++++   D +I    ++G   + +     +R  +    R    P+S    L+
Sbjct: 21  RQLSPITLLNYQRQLDALIALADEAGLKSWSQCDAAQVRSFAVRSRRAGLGPASLALRLS 80

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLA 195
           ++R  F W V Q  ++ NP   +  PK      +    +D+ +            + R  
Sbjct: 81  ALRSFFDWLVGQGELSANPAKGIAAPKIPRHLPKNIDVDDVNRLLDIDLNDPLAVRDRAM 140

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLAMT------ 248
            E +  +GLR S+     ++HL           K      + +    +  +         
Sbjct: 141 LEVMYGAGLRLSELVNLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVAWIEHWLDLRGL 200

Query: 249 -PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAH 305
                +  F++   ++++A      F     K G+N     H +R   AT   ++     
Sbjct: 201 FGTDDDALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVHPHKLRHSFATHMLESSGDLR 260

Query: 306 ELMATYGWKTVDQAETYTK 324
            +    G   +   + YT 
Sbjct: 261 GVQELLGHANLSTTQIYTH 279


>gi|87198641|ref|YP_495898.1| phage integrase [Novosphingobium aromaticivorans DSM 12444]
 gi|87134322|gb|ABD25064.1| phage integrase [Novosphingobium aromaticivorans DSM 12444]
          Length = 383

 Score =  125 bits (315), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 61/359 (16%), Positives = 112/359 (31%), Gaps = 43/359 (11%)

Query: 21  IIYY-FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYR 79
           I +Y +    G RIR+                           +  +   T+K L + ++
Sbjct: 18  IRWYIYAWRGGPRIRVAEQATQP-----RLTKADIAAIAAAQQASDEPADTVKGLSTRWQ 72

Query: 80  KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI----TTKHIRSGVESRKH--TPSSA 133
           +S  W + A ++R  +     +I  K G    R      TT  I    +         +A
Sbjct: 73  RSREWKAFAESTRSLWGDCCTKIEEKWGKVPLRVFGDPRTTSKIVKWRDEMADANGLRTA 132

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERP-KRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
            + +  + ++ K+ + Q  +A NP   V R  K        W  ED   F +   +    
Sbjct: 133 DEHVKVLSMMAKYGLLQGLMACNPAQPVPRLWKGGNREEIIWLPEDCAAFDAVAPQWLVD 192

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT----IITVELPDGFMKLL--- 245
             A +   ++G+R +D C      + +       +K          + +  G  +LL   
Sbjct: 193 --ARKLAEFTGMRRADLCALRRDEVFDTHIGRTAKKKSAGKRQRTVMPIIPGLRELLEEL 250

Query: 246 --AMTPIGKETFFINNDKQKMNATQFSIWFKAKA----------------TKAGVNKSAH 287
                  G ET  +      +     S  F                     +A   K  H
Sbjct: 251 RARTRKPGIETVLVGAHGNPVQPATLSAQFNKYRSLANDGQGIVHRAAYDDEADKAKHLH 310

Query: 288 GVRKFSATISAD---AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343
            +R   AT        G T  ++ +  GW +   A    +  D   + +   +RI+   
Sbjct: 311 DLRGTFATKLMTLPGGGLTDDQIASVMGWSSDQVATIRKRYVDEAAIVVAIGKRIAEAA 369


>gi|288937766|ref|YP_003441825.1| tyrosine recombinase XerC [Klebsiella variicola At-22]
 gi|288892475|gb|ADC60793.1| tyrosine recombinase XerC [Klebsiella variicola At-22]
          Length = 300

 Score =  125 bits (315), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 44/259 (16%), Positives = 93/259 (35%), Gaps = 19/259 (7%)

Query: 85  GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIR--SGVESRKH-TPSSAIQFLT 138
             L+  +  +++   D +I    ++G   +++     +R  +    R    P+S    L+
Sbjct: 21  RQLSPITLTNYQRQLDALIALADEAGLKSWQQCDAAQVRSFAVRSRRAGLGPASLALRLS 80

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLA 195
           ++R  F W V Q  +A NP   +  PK      +    +D+ +            + R  
Sbjct: 81  ALRSFFDWMVSQGELAANPAKGIAAPKIPRHLPKNIDVDDVNRLLDIDLNDPLAVRDRAM 140

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT--------VELPDGFMKLLAM 247
            E +  +GLR S+     ++HL      +     G+           V   + ++ L  +
Sbjct: 141 LEVMYGAGLRLSELVNLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVTWIEHWLDLRGL 200

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAH 305
                +  F++   ++++A      F     K G+N     H +R   AT   ++     
Sbjct: 201 FGTDDDALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVHPHKLRHSFATHMLESSGDLR 260

Query: 306 ELMATYGWKTVDQAETYTK 324
            +    G   +   + YT 
Sbjct: 261 GVQELLGHANLSTTQIYTH 279


>gi|229047517|ref|ZP_04193107.1| Tyrosine recombinase xerC [Bacillus cereus AH676]
 gi|228723764|gb|EEL75119.1| Tyrosine recombinase xerC [Bacillus cereus AH676]
          Length = 299

 Score =  125 bits (315), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 43/272 (15%), Positives = 97/272 (35%), Gaps = 26/272 (9%)

Query: 85  GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLT 138
            + +  +  S+++  +  +    + G   +  +T   +R  +      K    S  + ++
Sbjct: 18  RNYSKYTIASYQNDLEHFVQFMEREGISSFLDVTYADVRLYLTTLHDEKLARKSVARKVS 77

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194
           S+R L+++ +R+ Y   NP      PK++    +    E++++           G + + 
Sbjct: 78  SLRSLYRFLMREGYRKDNPFALASLPKKELSIPKFLYAEELEELFEVSDMETPLGQRNQA 137

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE------------LPDGF 241
             E +  +G+R S+     +  +   + +I    K      +             + +G 
Sbjct: 138 LLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQRYIPFGSYAQDSLITYIENGR 197

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
            +L+  T       F+N     + +            KA +    S H +R   AT   D
Sbjct: 198 KQLVNKTDEDSHMVFLNAKGTPLTSRGVRYVLNELIKKASLTMRISPHMLRHTFATHMLD 257

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            GA    +    G + +   + YT    + RL
Sbjct: 258 EGADLRTVQELLGHENLSTTQIYTH-VSKERL 288


>gi|239618321|ref|YP_002941643.1| integrase family protein [Kosmotoga olearia TBF 19.5.1]
 gi|239507152|gb|ACR80639.1| integrase family protein [Kosmotoga olearia TBF 19.5.1]
          Length = 305

 Score =  125 bits (315), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 45/288 (15%), Positives = 101/288 (35%), Gaps = 28/288 (9%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESR- 126
            +  +  + +   +  +L+ N+  S+        +   +   DYR++  + I   ++   
Sbjct: 3   FEDAVERFAEYLEFVRNLSKNTVESYTRDLKHFGQYLEEYSLDYRQVKRRDIEKFMKELS 62

Query: 127 -------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
                  + +PSS  + L++++  + +      V   P   V+ PK +       + E++
Sbjct: 63  QGNFSDSRLSPSSVARHLSTLKTFYMFLYVSGTVNKIPTDLVKAPKTRRRIPEYISYEEV 122

Query: 180 QQFKSFWSE---GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---NNIFSIKTQKTGTII 233
           Q+    + E   G + R     + Y GLR S+ C   ++ +    + +  +K+ K     
Sbjct: 123 QKILEAFPETHLGKRNRAIVALMYYCGLRVSEVCSLTLRDISLESDPLVRVKSGKGDKDR 182

Query: 234 TVELPDGFMKLL-------AMTPIGKETF--FINNDKQKMNATQFSIWFKAKATKAGVNK 284
            V L    ++++          P        F+    + +     +   +    K   +K
Sbjct: 183 IVPLTPDAVRIISDYLKHRDRFPDANRHIKLFVGIRGEPITRKSVNKMLQNHVKKIFPDK 242

Query: 285 S--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
               H  R   AT     GA+   +    G   +     Y    DR +
Sbjct: 243 HLHPHIFRHSCATHLLQRGASIKIVQEILGHANISTTSIYLHITDREK 290


>gi|311742411|ref|ZP_07716220.1| tyrosine recombinase XerD [Aeromicrobium marinum DSM 15272]
 gi|311314039|gb|EFQ83947.1| tyrosine recombinase XerD [Aeromicrobium marinum DSM 15272]
          Length = 310

 Score =  125 bits (315), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 48/284 (16%), Positives = 98/284 (34%), Gaps = 30/284 (10%)

Query: 70  TLKWLISEYRKSAH-WGSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGVES 125
           T+   +++Y         LA N+ +S+     + +    + G     +IT   +   V  
Sbjct: 7   TVGQAVADYLSHLGVERGLADNTLLSYRRDLRRYLGYLAEIGREQPDEITEADLLGFVAL 66

Query: 126 RK--------HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
            +           +S  + + ++R L ++ +R++ VA +   +V+ P+      +    E
Sbjct: 67  LRTGDDLTGPLGAASVARHVVTVRGLHRFWLREQLVATDVAGAVKPPRPAQRLPKALALE 126

Query: 178 DMQQFKSFWSEG-----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGT 231
            ++               + R   E L  +G R S++    V  L  +    +   K G 
Sbjct: 127 QVEAILDAAGAPGTRLAQRDRALLELLYGTGARISEAVGIDVDDLDLDESTLLLRGKGGK 186

Query: 232 IITVELPDGFMKLL----------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281
              V +       +            +       F+N+   +++           A +AG
Sbjct: 187 HRIVPVGSFAATAIGDYLVGARVALSSTAASPALFLNSRGGRLSRQSAWTVLTRAARRAG 246

Query: 282 V--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           V  + S H +R   AT   D GA    +    G  +V   + YT
Sbjct: 247 VETDVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYT 290


>gi|72161605|ref|YP_289262.1| site-specific tyrosine recombinase XerD [Thermobifida fusca YX]
 gi|71915337|gb|AAZ55239.1| tyrosine recombinase XerD [Thermobifida fusca YX]
          Length = 321

 Score =  125 bits (315), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 55/285 (19%), Positives = 98/285 (34%), Gaps = 39/285 (13%)

Query: 85  GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGV--------ESRKHTPSSA 133
             LA N+  S+    ++ +      G  D R +    + S +          R    +SA
Sbjct: 23  RGLAANTLQSYRRDLNRYLDFLTARGITDLRDVRADDVASFLRTLREGDAHHRPLGANSA 82

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG---- 189
            + + ++R L ++A+R+   A +P   V  P  +    +  T   ++   +    G    
Sbjct: 83  GRAVIAVRGLHRFALREGLTAHDPAHEVRPPALQRRLPKAITVAQVEALLAAADIGGGPR 142

Query: 190 -SQPRLAFEFLLYSGLRCSDSCRAGVQHL---------QNNIFSIK-TQKTGTIITVELP 238
             + R   E L  +G R S+     V  +            + +++   K G    V + 
Sbjct: 143 ALRDRALIELLYGTGARISEVVGLDVDDVTRLRPDPHADTEVAAVRFRGKGGKERIVPVG 202

Query: 239 DGFMKL-----------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSA 286
                            LA    G    F+N    ++          A A +AG+ + S 
Sbjct: 203 RYARTAVDAYLVRARPGLAAAGRGSSALFLNARGGRLTRQGAWAVLHAAAERAGLRDVSP 262

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYT-KGADRIR 330
           H +R   AT   D GA    +    G  +V   + YT    DR+R
Sbjct: 263 HTLRHSFATHLIDGGADVRVVQELLGHASVTTTQVYTLVTVDRLR 307


>gi|269120433|ref|YP_003308610.1| integrase family protein [Sebaldella termitidis ATCC 33386]
 gi|268614311|gb|ACZ08679.1| integrase family protein [Sebaldella termitidis ATCC 33386]
          Length = 307

 Score =  125 bits (315), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 55/278 (19%), Positives = 96/278 (34%), Gaps = 27/278 (9%)

Query: 74  LISEYRKSAHWGSL----AVNSRISFES----YFDQIIRKSGDFDYRKITT---KHIRSG 122
           LI    K  H+  +    + N+   +      + D I      FDY K+     +   + 
Sbjct: 10  LIEPLEKFLHFQEVILGKSYNTIRGYRKDITQFIDYISGNEEIFDYNKVEVFTVRSFIAY 69

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
             + +    S  + ++++R  F +   Q  V  N  + V  PK + E     TK+D+ + 
Sbjct: 70  SNNNEVGKRSINRKISALRTFFAYLKEQNIVEANKLIYVNMPKFEKELPTVLTKDDINKL 129

Query: 183 KSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-EL 237
           ++        G + RL  EFL  SGLR S+        +      ++    G    V   
Sbjct: 130 RNVIDISKVTGIRDRLIIEFLYSSGLRSSELVSLSELMINLEEREVRVLGKGNKERVTFF 189

Query: 238 PDGFMKLLAMTPIGKET---------FFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286
            +   K        K            F+N+  +++            A KAG+NK  + 
Sbjct: 190 SENARKWYEKYISAKRNEYKNYTPNIVFVNSRGERITTRSLRRLIADYAEKAGINKEVTP 249

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           H  R   AT   +       L    G  ++   + YT 
Sbjct: 250 HVFRHSFATTLLNNKVDIRYLQELLGHSSISTTQVYTH 287


>gi|114331554|ref|YP_747776.1| tyrosine recombinase XerC [Nitrosomonas eutropha C91]
 gi|114308568|gb|ABI59811.1| tyrosine recombinase XerC subunit [Nitrosomonas eutropha C91]
          Length = 321

 Score =  125 bits (315), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 42/285 (14%), Positives = 101/285 (35%), Gaps = 31/285 (10%)

Query: 71  LKWLISEYRKS-AHWGSLAVNSRISFESYFDQIIR-----------KSGDFDYRKI---T 115
           L  L+ EY    +   SL+V ++  +      ++R           K  D    ++    
Sbjct: 13  LPSLLGEYLTYLSSTRSLSVQTQHHYRRDLIALVRCTIAQHENGNNKISDISLTRLHSHD 72

Query: 116 TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
            +H  + + S   +  S  + L++ R  +++ +R  +   NPCL V  PK   +     +
Sbjct: 73  IRHFIARLHSSGLSGRSLARMLSAWRGFYRYLIRHHHHNGNPCLDVRVPKSPHKLPHALS 132

Query: 176 KEDMQQFKSFWS-----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
            ++  Q  +F         ++    FE    SGLR ++  +     +     +++    G
Sbjct: 133 PDEAAQLLTFNPSSNDMLATRDLAIFELFYSSGLRLTELTQLQPTDIDFTGGTVRVTGKG 192

Query: 231 TIITV-ELPDGFMKLLAM--------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281
               +  + +  ++ L             G+   F++   ++++    +     +A    
Sbjct: 193 NKTRIVPVGELALRALQAWLPLRSAWLIPGETALFLSQRGRRIHPRTIAYRLHQRAQLQN 252

Query: 282 VNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           ++     H +R   A+    +      +    G  ++   + YT 
Sbjct: 253 LDSRVHPHTLRHSFASHLLQSSGDLRAVQEMLGHSSIRSTQVYTH 297


>gi|170729640|ref|YP_001775073.1| phage-related integrase [Xylella fastidiosa M12]
 gi|167964433|gb|ACA11443.1| phage-related integrase [Xylella fastidiosa M12]
          Length = 339

 Score =  125 bits (315), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 62/333 (18%), Positives = 116/333 (34%), Gaps = 28/333 (8%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
           +P F  + + + G + YY+  G   R   P          Y  A+     + E+      
Sbjct: 11  IPRFRVRPQ-KSGVVYYYYDHGGKPRKETPLG------RDYGLAI-KRWAELEHAQITPA 62

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVE 124
              T + +   YR      + A +++     Y + +++   D    +  I   +IR  ++
Sbjct: 63  IAVTFRHVAERYRAEVI-PTKARSTQQMHHIYLNYLLKFFDDPPAPFESIKPVNIRQYLD 121

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVA-INPCLSVERPKRKTEGIRPWTKEDMQQFK 183
            R     SA + +     L+ WA  +      NPC  + R K +   +      D   ++
Sbjct: 122 WRTSKV-SANREVALFSHLWNWARSKGITDLPNPCGGIRRNKERGRDVYI----DDTTYR 176

Query: 184 SFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
           + +    Q  R A +    +G R SD      +H+ N    I   KTG  + + +     
Sbjct: 177 AVYQAADQTLRDAMDLAYLTGQRVSDVVNMDERHIVNGALEICQAKTGVKLAIAITGELA 236

Query: 243 KLLAMTPIGKE-------TFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKF 292
            L+      K           ++     +N  + +  F+     AG+ K       +R  
Sbjct: 237 VLIKRILARKRGMKLRSTRLIVDEKGLGLNWKKLAYRFRKVRAAAGIAKEVFQFRDLRAK 296

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKG 325
           +AT  AD      +  A  G  +V   E Y + 
Sbjct: 297 AATDKADLAGDMRQAQAQLGHASVTMTEHYVRK 329


>gi|189485661|ref|YP_001956602.1| tyrosine recombinase XerD [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
 gi|170287620|dbj|BAG14141.1| tyrosine recombinase XerD [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
          Length = 294

 Score =  125 bits (315), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 42/272 (15%), Positives = 96/272 (35%), Gaps = 20/272 (7%)

Query: 85  GSLAVNSRISFESYFDQII-----RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
             L+ N+ +++++   + I     ++    ++           +++    P S  + + S
Sbjct: 19  KGLSENTVLAYKADVLKFINFAKKKRISLENFEHNDITDFLWEMKTEGLKPRSIFRVIES 78

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195
           +R  +K+   ++    NP L +  P          T +++    +          + +  
Sbjct: 79  LRQFYKFLNSEDLAKNNPTLYLATPNLPENLPDILTFDEVDLLLNSINDDDEMHIRNKAM 138

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDG-------FMKLLAM 247
            E L  +GLR S+        +   + F     K      V   +        ++K    
Sbjct: 139 LELLYAAGLRVSELINLKFSDINLEDCFLRIIGKGSKERLVPFGNKAKFFISIYLKKRRP 198

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAH 305
                +  FI+   +K++  +F    K  A   G+NK  + H +R   A+     GA   
Sbjct: 199 CLNVNDHIFISRLGKKLSRIEFWRQLKNIAKNVGINKNITPHTLRHSFASHLLKGGADIR 258

Query: 306 ELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
            +    G  ++   + YT   D  R+  ++ +
Sbjct: 259 FVQEMLGHASITTTQIYTH-LDEDRIVQQHKK 289


>gi|322515579|ref|ZP_08068560.1| tyrosine recombinase XerC [Actinobacillus ureae ATCC 25976]
 gi|322118382|gb|EFX90648.1| tyrosine recombinase XerC [Actinobacillus ureae ATCC 25976]
          Length = 331

 Score =  125 bits (315), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 42/268 (15%), Positives = 96/268 (35%), Gaps = 20/268 (7%)

Query: 85  GSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLT 138
              + ++  +++     +     ++G   ++++    +R  +     +  +  S    L 
Sbjct: 49  KQASPHTLSNYQRQLLAVSEMFSQAGIGAWQEVNVAAVRWMLTQSHKQGLSAKSIGLRLV 108

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF---KSFWSEGSQPRLA 195
           ++R  F + V+QE + +NP L ++ PK      +    E + Q    ++      +    
Sbjct: 109 ALRQWFNYLVQQEQMTVNPALGIKSPKVGKHLPKNIDAEQIGQLLNTETSEPLELRDLAM 168

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-ELPDGFMKLLAMTPIGKET 254
            E +  SGLR S+     +  +  N   +K    G    +  +    ++ L     G+  
Sbjct: 169 MELMYSSGLRLSELQGLDLGDMDLNAREVKVLGKGNKERILPIGTKALQALQAWLGGRHD 228

Query: 255 F-------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAH 305
           F       F+N    +++     +  +    K G+  +   H +R   AT   +A     
Sbjct: 229 FNPQDNALFLNKRGGRLSHRSIQLAMQKWGKKQGLETHLHPHKLRHSFATHMLEASGDLR 288

Query: 306 ELMATYGWKTVDQAETYTKGADRIRLGI 333
            +    G  ++   + YT   D   L  
Sbjct: 289 AVQELLGHSSLSTTQIYT-SLDFQHLAQ 315


>gi|83942296|ref|ZP_00954757.1| tyrosine recombinase XerD [Sulfitobacter sp. EE-36]
 gi|83846389|gb|EAP84265.1| tyrosine recombinase XerD [Sulfitobacter sp. EE-36]
          Length = 324

 Score =  125 bits (315), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 47/286 (16%), Positives = 103/286 (36%), Gaps = 32/286 (11%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGV---ES 125
           L W+ +     A     A N+++++                D+  +  K I + +   ++
Sbjct: 6   LHWISTFLEAQAAELGAATNTQLAYGRDLKDFDSFLARRTLDFVTVGRKDIEAYLVWCDA 65

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +    S+  + L++++ L+++A  + + + NP + +  P +     +  +++++ Q    
Sbjct: 66  QGLAKSTRARRLSAIKQLYRFAFEEGWRSDNPAIQIAGPGQDKRLPKVLSEDEVDQLLDA 125

Query: 186 W-------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVEL 237
                   S+  +     E L  +G+R S+     V   + +    +   K G    V L
Sbjct: 126 ARHSGRNTSDQLRNTCLMELLYATGMRVSELVSLRVSAARGDPRLLLIMGKGGKERLVPL 185

Query: 238 PDGFMKLLAMTPIGKET--------------FFINNDKQK--MNATQFSIWFKAKATKAG 281
            D   + LA   + ++               +   +      +   +F +  K  A  AG
Sbjct: 186 SDPSREALAAWLVQRDRTDEAAQAKGKPASIYLFPSRGSAGYLTRHRFYLLIKEFALTAG 245

Query: 282 VN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           V+    + H +R   AT     GA    +    G   V   E YT 
Sbjct: 246 VDPSKVTPHTLRHAFATHLLANGADLRAIQTMLGHADVATTEIYTH 291


>gi|218235700|ref|YP_002368632.1| site-specific tyrosine recombinase XerC [Bacillus cereus B4264]
 gi|229111302|ref|ZP_04240855.1| Tyrosine recombinase xerC [Bacillus cereus Rock1-15]
 gi|229129107|ref|ZP_04258080.1| Tyrosine recombinase xerC [Bacillus cereus BDRD-Cer4]
 gi|229146402|ref|ZP_04274773.1| Tyrosine recombinase xerC [Bacillus cereus BDRD-ST24]
 gi|229152030|ref|ZP_04280225.1| Tyrosine recombinase xerC [Bacillus cereus m1550]
 gi|296504326|ref|YP_003666026.1| site-specific tyrosine recombinase [Bacillus thuringiensis BMB171]
 gi|218163657|gb|ACK63649.1| tyrosine recombinase XerC [Bacillus cereus B4264]
 gi|228631379|gb|EEK88013.1| Tyrosine recombinase xerC [Bacillus cereus m1550]
 gi|228637035|gb|EEK93494.1| Tyrosine recombinase xerC [Bacillus cereus BDRD-ST24]
 gi|228654344|gb|EEL10209.1| Tyrosine recombinase xerC [Bacillus cereus BDRD-Cer4]
 gi|228672078|gb|EEL27369.1| Tyrosine recombinase xerC [Bacillus cereus Rock1-15]
 gi|296325378|gb|ADH08306.1| site-specific tyrosine recombinase [Bacillus thuringiensis BMB171]
          Length = 299

 Score =  125 bits (315), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 43/272 (15%), Positives = 97/272 (35%), Gaps = 26/272 (9%)

Query: 85  GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLT 138
            + +  +  S+++  +  +    + G   +  +T   +R  +      K    S  + ++
Sbjct: 18  RNYSKYTIASYQNDLEHFVQFMEREGISSFLDVTYADVRLYLTTLHDEKLARKSVARKVS 77

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194
           S+R L+++ +R+ Y   NP      PK++    +    E++++           G + + 
Sbjct: 78  SLRSLYRFLMREGYRKDNPFALASLPKKELSIPKFLYAEELEELFEVSDTETPLGQRNQA 137

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE------------LPDGF 241
             E +  +G+R S+     +  +   + +I    K      +             + +G 
Sbjct: 138 LLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQRYIPFGSYAQDSLITYIENGR 197

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
            +L+  T       F+N     + +            KA +    S H +R   AT   D
Sbjct: 198 KQLVNKTDEDSHMVFLNAKGTPLTSRGVRYVLNELIKKASLTMRISPHMLRHTFATHMLD 257

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            GA    +    G + +   + YT    + RL
Sbjct: 258 EGADLRTVQELLGHENLSTTQIYTH-VSKERL 288


>gi|327537504|gb|EGF24226.1| site-specific DNA tyrosine recombinase, XerD [Rhodopirellula
           baltica WH47]
          Length = 317

 Score =  125 bits (315), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 47/300 (15%), Positives = 100/300 (33%), Gaps = 23/300 (7%)

Query: 48  MSALTGSTPKREYINSPRKKPTTLKWLISEYRKS-AHWGSLAVNSRISFESYFDQIIRKS 106
           M+       + +   +    P+  + +  E+         LA N+  ++     + +   
Sbjct: 1   MAKRLTKLQQLKSGQTESVAPSAGQAVCDEFLVYLKRECHLADNTVAAYGRDMKRFVTWM 60

Query: 107 GDFDYRKITT---KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163
                  +T        + +      P+S  + + ++R  FK+   +     NP   +  
Sbjct: 61  DGRRPADLTITELSDFVASLHGEGLAPASISRAIVAIRTFFKYLQLEGITVDNPAELLAT 120

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQN 219
            K         +  +++ F S   +      + R   E L  +G R S+ C   V+ L  
Sbjct: 121 QKAWQRMPGVLSPNEVEAFLSAVKKSDSFWQRDRALLEVLYATGCRASEVCTLRVRDLTL 180

Query: 220 NIFSIKTQKTGTI-------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA 266
           +  +++    G               I + L +    L    P   +  F++   + ++ 
Sbjct: 181 DEKTLRCHGKGDKQRMVPIGGRAIRSIQLYLEESRHILADRNPGQIDELFLSRGGKALDR 240

Query: 267 TQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            Q     K  A +AG+    S H +R   AT     GA   ++    G  ++   + YT 
Sbjct: 241 IQLWRLVKRYAKRAGISDEISPHSLRHSFATHLLAGGADLRQVQEMLGHASIQTTQIYTH 300


>gi|322420470|ref|YP_004199693.1| integrase family protein [Geobacter sp. M18]
 gi|320126857|gb|ADW14417.1| integrase family protein [Geobacter sp. M18]
          Length = 304

 Score =  125 bits (315), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 44/270 (16%), Positives = 87/270 (32%), Gaps = 28/270 (10%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRK---------ITTKHIRSGVESRKHTPSSAI-- 134
             +  +  ++      + R +G+              +        V   K  P SA   
Sbjct: 25  GRSPATIAAYRRDLALVARVAGELAPGVVCREVTVGFLDQVFSAEAVTESKRGPRSAASL 84

Query: 135 -QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS--- 190
            +   ++R  F WA     V  NP  S+   +   +     T  + ++        +   
Sbjct: 85  HRMKAAVRAFFAWASEAGVVDDNPARSIRMHRLPRKLPVFLTTAEKKRLLKELKGRTDFS 144

Query: 191 --QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE---------LPD 239
             + R   E LL +G+R  +     +  +  +   ++ +  G +  V+         L  
Sbjct: 145 TLRDRAMIEVLLGTGIRLGELAALNLDDIDLDAKHLRVRAKGNVPQVKFIKTDLRTLLRR 204

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS 297
              +    +    E  F++N   ++   Q +        KAG+ K  + HG+R   AT  
Sbjct: 205 YLAERRRHSRPEMEALFLSNRDGRLCQRQIANRLAHWLRKAGIEKELTPHGLRHTFATHL 264

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGAD 327
             A      +    G + V   + YT   D
Sbjct: 265 YCATNDLLVVQRALGHRDVSTTQIYTHLVD 294


>gi|68535950|ref|YP_250655.1| integrase/recombinase [Corynebacterium jeikeium K411]
 gi|68263549|emb|CAI37037.1| integrase/recombinase [Corynebacterium jeikeium K411]
          Length = 299

 Score =  125 bits (315), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 49/276 (17%), Positives = 95/276 (34%), Gaps = 23/276 (8%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS----GVESR 126
           + L++ Y +       ++V++  +++   D+ +   G    +++T   I        +  
Sbjct: 7   RKLVTAYIRHLKTERDVSVHTLSNYQRDLDRYLVWLGSKALQEVTATDIEDHLVYLRKDL 66

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
               SSA + L ++R L  +A     +  +  + V  P +     +  +   ++   +  
Sbjct: 67  NLAASSAARGLAAIRGLHSFAHADGRLPFDVAVDVPTPSQGGSIPKALSLAQVEALLNAV 126

Query: 187 SEGS-------QPRLAFEFLLYSGLRCSDSCRAGVQHL-QNNIFSIKTQKTGTIITVEL- 237
             G        + R   E L  +G R ++     V  L +     +   K G    V L 
Sbjct: 127 PAGDGASQINIRDRALLEMLYSTGARITELLDLDVDDLDREQRVLLVRGKGGKERIVPLG 186

Query: 238 PDGFMK----LLAMTPI----GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHG 288
                     L+   P     G    F+NN   ++            A  AG+   S H 
Sbjct: 187 RPALQAVERYLVRARPSLNKKGSPALFLNNRGARLGRQSGFKIVSQAAEAAGLEHVSPHS 246

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +R   AT   + GA    +    G  +V   + YTK
Sbjct: 247 LRHSFATHLLEGGADIRVVQELLGHASVATTQIYTK 282


>gi|296105305|ref|YP_003615451.1| site-specific tyrosine recombinase XerC [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
 gi|295059764|gb|ADF64502.1| site-specific tyrosine recombinase XerC [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
          Length = 300

 Score =  125 bits (315), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 43/259 (16%), Positives = 93/259 (35%), Gaps = 19/259 (7%)

Query: 85  GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLT 138
             L+  + ++++   D I     + G   +++     +R  V     +  +P+S    L+
Sbjct: 21  RQLSPITLLNYQRQLDAIMQIADEIGLKSWQQCDAATVRGFVVRSRKKNLSPASLALRLS 80

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLA 195
           ++R  F W V Q  +  NP   +  PK      +    +D+ +            + R  
Sbjct: 81  ALRSFFDWLVSQGGLKANPAKGIATPKAPRHLPKNIDVDDVNRLLDIDLNDPLAVRDRAM 140

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT--------VELPDGFMKLLAM 247
            E +  +GLR S+     ++HL      +     G+           V   + ++ L  +
Sbjct: 141 LEVMYGAGLRLSELVNLDLKHLDLESGEVWVMGKGSKERRLPIGRNAVSWIEHWLDLRGL 200

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAH 305
               ++  F++   ++++A      F     K G+N     H +R   AT   ++     
Sbjct: 201 FGAEEDALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVHPHKLRHSFATHMLESSGDLR 260

Query: 306 ELMATYGWKTVDQAETYTK 324
            +    G   +   + YT 
Sbjct: 261 GVQELLGHANLSTTQIYTH 279


>gi|99081269|ref|YP_613423.1| phage integrase [Ruegeria sp. TM1040]
 gi|99037549|gb|ABF64161.1| phage integrase [Ruegeria sp. TM1040]
          Length = 317

 Score =  125 bits (315), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 99/278 (35%), Gaps = 33/278 (11%)

Query: 88  AVNSRISFESYFDQII--RKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLTSMRV 142
           A N+ +++      +    ++    + ++    I + +   ++   + ++  + L++++ 
Sbjct: 25  ARNTLLAYGRDLRNVTTWMRTKGQSFAQMQQADIEAYLISCDAEGLSRATRARRLSAIKQ 84

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ---PRLA---- 195
           ++++A  + +   NP L ++ P R     +   + ++ +  +   E  +    RL     
Sbjct: 85  IYRFAFEEGWRQDNPALQIKGPGRDKSLPKTLDEAEVDRLLAAAREVGRTEADRLRNTCL 144

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254
            E L  +G+R S+     V   + +    +   K G    V L       L    + +++
Sbjct: 145 MELLYATGMRVSELVSLPVSATRGDPNMLLILGKGGKERMVPLSPPARAALGAWIVLRDS 204

Query: 255 FFINNDKQ----------------KMNATQFSIWFKAKATKAGV---NKSAHGVRKFSAT 295
                + Q                 +   +F +  K  A   GV     + H +R   AT
Sbjct: 205 LEDKREGQGHKASRFLFPSRSKEGHLTRHRFYLLIKELAVAGGVSPEKVTPHTLRHAFAT 264

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
                GA    + A  G   +   E YT   D  RL  
Sbjct: 265 HLLQNGADLRAIQALLGHADIATTEIYTHVLD-ARLAE 301


>gi|320104524|ref|YP_004180115.1| integrase family protein [Isosphaera pallida ATCC 43644]
 gi|319751806|gb|ADV63566.1| integrase family protein [Isosphaera pallida ATCC 43644]
          Length = 442

 Score =  125 bits (315), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 48/305 (15%), Positives = 103/305 (33%), Gaps = 31/305 (10%)

Query: 57  KREYINSPRKKPTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGD------- 108
           +            TL  LI E+  S      ++ ++  +++       R   +       
Sbjct: 128 RTPPGARDSSPKPTLHPLIVEFVTSLERNREVSEHTLRAYQEDLGLFSRYLAESQPGCAS 187

Query: 109 -----FDYRKITTKHIRS---GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
                 D R    + +R     +  + + P +  + L S+R  ++   +  ++  +P  +
Sbjct: 188 SDREPIDPRLADARRLRGYSSWLSRQGYAPGTIARRLASLRTFYRHLRKHGHLEGDPTAA 247

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216
           +  PK      RP   + +++           G + R   E L   GLR  +     ++ 
Sbjct: 248 MRNPKPARRLPRPLRLDQIERLLEAVPTDQSLGVRDRAILELLYGGGLRVGELVALDLED 307

Query: 217 LQNNIFSIKTQKTGTIITV-ELPDGFMKLLAMTPI-------GKETFFINNDKQKMNATQ 268
           L      ++ +  G    +  +     + +            G+   F+N   +++ A  
Sbjct: 308 LDLERNVVRVRGKGRRERLTPIGKQAAEWVRRWLTHRRPDHGGEHALFLNRYGRRLTARS 367

Query: 269 FSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
               F+  A   G++   + H +R   AT   D GA    +    G + +   + YT   
Sbjct: 368 VDRLFETHARGLGLDADATPHSLRHSFATHLLDRGADLRSVQELLGHRRLTTTQIYT-QV 426

Query: 327 DRIRL 331
            R RL
Sbjct: 427 TRERL 431


>gi|308271353|emb|CBX27961.1| Tyrosine recombinase xerC [uncultured Desulfobacterium sp.]
          Length = 310

 Score =  125 bits (315), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 56/295 (18%), Positives = 103/295 (34%), Gaps = 39/295 (13%)

Query: 71  LKWLISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDF----------------DYRK 113
           +  +IS + ++ A     +VN+  ++ +   +    + +                 +   
Sbjct: 6   IDSMISSFIETLASEKGYSVNTCRAYANDLYEFSSYAAEKSGQDSDEESEISTFMVEDAN 65

Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
                   G   +K+   S I+ L+++R  FK  VR+  ++ NP   +  PK+       
Sbjct: 66  YLLIRAYLGFLHKKNKKKSIIRKLSALRSFFKHLVRRNIISDNPLELISTPKQDKNIPAY 125

Query: 174 WTKEDMQQFKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QK 228
            T ++M +           G + R  FE +  SG+R S+     V  +      IK   K
Sbjct: 126 LTVDEMFRLLDSIKTDTVSGLRNRAIFETMYSSGIRVSELAGLNVSSVDFGAGLIKVFGK 185

Query: 229 TGTIITVELPDGFMKLLA----------MTPIGKETFFINNDKQKMNATQFS----IWFK 274
            G    V +    M  +           +        F+N +K ++     +     +  
Sbjct: 186 GGKERIVPIGSKAMDTIKSYRQKIQGDNILSDKNSPLFLNKNKGRLTTRSIARVLEKFVS 245

Query: 275 AKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADR 328
                  V  S H +R   AT   DAGA    +    G K++   + YT  G DR
Sbjct: 246 EFCIS--VPVSPHALRHSFATHMLDAGADLRVVQELLGHKSLSTTQRYTHVGIDR 298


>gi|170730468|ref|YP_001775901.1| phage-related integrase [Xylella fastidiosa M12]
 gi|167965261|gb|ACA12271.1| phage-related integrase [Xylella fastidiosa M12]
          Length = 339

 Score =  125 bits (315), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 61/323 (18%), Positives = 111/323 (34%), Gaps = 27/323 (8%)

Query: 17  RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76
           + G + YY+  G   R   P          Y  A+     + E+         T + +  
Sbjct: 20  KSGVVYYYYDHGGKPRKETPLG------RDYGLAIQ-RWAELEHAQITPAIAVTFRHVAE 72

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRKHTPSSAI 134
            YR      + A N++     Y + +++   D    +  I   +IR  ++ R     SA 
Sbjct: 73  RYRAEVI-PTKAYNTQRMHHIYLNYLLKFFDDPPAPFESIKPVNIRQYLDWRTSKV-SAN 130

Query: 135 QFLTSMRVLFKWAVRQEYVA-INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP- 192
           + +     L+ WA  +      NPC  + R K +   +      D   +++ +    Q  
Sbjct: 131 REVALFSHLWNWARSKGITDLPNPCGGIRRNKERGRDVYI----DDTTYRAVYQAADQTL 186

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252
           R A +    +G R SD      +H+ N    I   KTG  + + +      L+      K
Sbjct: 187 RDAMDLAYLTGQRVSDVVNMDERHIVNGALEICQAKTGVKLAIAITGELAVLIKRILARK 246

Query: 253 E-------TFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATISADAGA 302
                      ++     +N  + +  F+     AG+ K       +R  +AT  AD   
Sbjct: 247 RGMKLRSTRLIVDEKGLGLNWKKLAYRFRKVRAAAGIAKEIFQFRDLRAKAATDKADFAG 306

Query: 303 TAHELMATYGWKTVDQAETYTKG 325
              +  A  G  +V   E Y + 
Sbjct: 307 DMRQAQAQLGHASVTMTEHYVRK 329


>gi|224537800|ref|ZP_03678339.1| hypothetical protein BACCELL_02683 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224520620|gb|EEF89725.1| hypothetical protein BACCELL_02683 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 294

 Score =  125 bits (314), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 43/276 (15%), Positives = 98/276 (35%), Gaps = 24/276 (8%)

Query: 73  WLISEYRKSAHW-GSLAVNSRISFESYFDQI----IRKSGDFDYRKITTKHIRSGV---E 124
           WL + +     +  + +  +  S+     Q       + GD     +  + +R  +    
Sbjct: 2   WLTNSFLDYLQYERNYSEETIKSYREDLCQFEKFAREEIGDSALSGVKAELVREWIVSLM 61

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
            + +T +S  + L+S+R  +K+ +R+  V +NP   +  PK K        + +M +   
Sbjct: 62  DKGYTSTSINRKLSSLRSFYKFLLRKGEVCVNPLQKITGPKNKKPLPTFLRESEMDKLLD 121

Query: 185 FWS-----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELP 238
                   +G +  +  E    +G+R S+      +++  +   IK T K      +   
Sbjct: 122 EVDFGEGFKGCRDHMIIEMFYATGMRLSELIGLDDKNVDFSSLLIKVTGKRNKQRLIPFG 181

Query: 239 DGFMKLL--------AMTPIGKETFFINNDKQKMNATQFSIWFKA--KATKAGVNKSAHG 288
           +     +         +     + FF+    ++++ +      K           +S H 
Sbjct: 182 EELKNAMIEYVNVRNEIVQARTDAFFVRESGERLSRSIVENLVKRNLSKVVTLKKRSPHV 241

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +R   AT   +  A    +    G +++   E YT 
Sbjct: 242 LRHTFATTMLNHDAELGAIKELLGHESLATTEVYTH 277


>gi|260578657|ref|ZP_05846565.1| integrase/recombinase XerD [Corynebacterium jeikeium ATCC 43734]
 gi|258603154|gb|EEW16423.1| integrase/recombinase XerD [Corynebacterium jeikeium ATCC 43734]
          Length = 299

 Score =  125 bits (314), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 50/276 (18%), Positives = 95/276 (34%), Gaps = 23/276 (8%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS----GVESR 126
           + L++ Y +       ++V++  +++   D+ +   G    +++T   I        +  
Sbjct: 7   RKLVTAYIRHLKTERDVSVHTLSNYQRDLDRYLVWLGSKALQEVTATDIEDHLVYLRKDL 66

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
               SSA + L ++R L  +A     +A +    V  P +     +  +   ++   +  
Sbjct: 67  NLAASSAARGLAAIRGLHSFAHTDGRLAFDVAADVPTPSQGGSIPKALSLAQVEALLNAV 126

Query: 187 SEGS-------QPRLAFEFLLYSGLRCSDSCRAGVQHL-QNNIFSIKTQKTGTIITVEL- 237
             G        + R   E L  +G R ++     V  L +     +   K G    V L 
Sbjct: 127 PAGDGASQINIRDRALLEMLYSTGARITELLDLDVDDLDREQRVLLVRGKGGKERIVPLG 186

Query: 238 PDGFMK----LLAMTPI----GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHG 288
                     L+   P     G    F+NN   ++            A  AG+   S H 
Sbjct: 187 RPALQAVERYLVRARPSLNKKGSPALFLNNRGARLGRQSGFKIVSQAAEAAGLEHVSPHS 246

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +R   AT   + GA    +    G  +V   + YTK
Sbjct: 247 LRHSFATHLLEGGADIRVVQELLGHASVATTQIYTK 282


>gi|91201862|emb|CAJ74922.1| similar to site-specific recombinase [Candidatus Kuenenia
           stuttgartiensis]
          Length = 295

 Score =  125 bits (314), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 48/273 (17%), Positives = 103/273 (37%), Gaps = 24/273 (8%)

Query: 88  AVNSRISFESYFDQIIR-KSGD--FDYRKITTKHIRSGVESRKHT---PSSAIQFLTSMR 141
           A+N+   ++S     I+   G    D+  I    I S + S KH     +S  + + S+R
Sbjct: 19  AMNTIHGYQSDLQLFIKFLLGKNIHDFSTIRPNIITSFIISEKHRGQSVNSINRAIVSIR 78

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLAFE 197
           + +K+ + +  +  NP +S++ PK   +         ++   S        G + +   E
Sbjct: 79  MFYKFLILEGKLQKNPLVSLDSPKLWKKLPYVVPIHKIEDLLSAADVKTKLGIRNKAILE 138

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---------ITVELPDGFMKLLAMT 248
            L  +G R S+     +  +      IK +  G+           ++ + +    +    
Sbjct: 139 LLYATGARVSEVATISLNGINLEYGYIKCKGKGSKERIVPLGKKASIAIQEYLTTVRPQI 198

Query: 249 PIGKET--FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATA 304
              + +   F++   + +      +  K  A KAG+ +  S H +R   AT   + GA  
Sbjct: 199 KDSQNSHYLFLSRTGRPLRRENIWLIVKNCALKAGITEAISPHKLRHSFATHLLENGADL 258

Query: 305 HELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
             +    G  ++   + YT   ++  L   + +
Sbjct: 259 RAVQEMLGHVSISTTQIYTH-VNKQHLKAIHQK 290


>gi|193068085|ref|ZP_03049050.1| tyrosine recombinase XerC [Escherichia coli E110019]
 gi|192958705|gb|EDV89143.1| tyrosine recombinase XerC [Escherichia coli E110019]
          Length = 298

 Score =  125 bits (314), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 40/270 (14%), Positives = 88/270 (32%), Gaps = 20/270 (7%)

Query: 75  ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRK 127
           +  Y +       L+  + ++++   + II  + +   +          ++       + 
Sbjct: 8   VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKG 67

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186
              +S    L+++R  F W V Q  +  NP   V  PK      +    +DM +      
Sbjct: 68  LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDIDI 127

Query: 187 --SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFMK 243
                 + R   E +  +GLR S+     ++HL      +     G     + +    + 
Sbjct: 128 NDPLAVRDRAMLEVMYGTGLRLSELVGLDIKHLDLESGEVWVMGKGCKERRLPIGRNAVA 187

Query: 244 LLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSA 294
            +              +  F++   ++++A      F     K G+N     H +R   A
Sbjct: 188 WIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFA 247

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324
           T   ++      +    G   +   + YT 
Sbjct: 248 THMLESSGDLRGVQELLGHANLSTTQIYTH 277


>gi|9626273|ref|NP_040609.1| integration protein [Enterobacteria phage lambda]
 gi|138569|sp|P03700|VINT_LAMBD RecName: Full=Integrase
 gi|215133|gb|AAA96562.1| integration protein [Enterobacteria phage lambda]
 gi|16209072|gb|AAL09849.1| integrase [CRIM helper plasmid pAH57]
 gi|16209183|gb|AAL09916.1| integrase [CRIM helper plasmid pINT-ts]
 gi|29415431|gb|AAO12751.1| integrase [CRIM plasmid pKD15]
 gi|29415712|gb|AAO12755.1| integrase [CRIM plasmid pKD16]
 gi|62825139|gb|AAY16131.1| lambda INT [Cloning vector lambda gt10]
 gi|63014370|gb|AAY25566.1| Int [Mus musculus]
          Length = 356

 Score =  125 bits (314), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 61/343 (17%), Positives = 114/343 (33%), Gaps = 25/343 (7%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHE---STFIPAYMSALTGSTPKREYINS 63
           LPP +     R+     Y     G+   L        +  I A +   +G   K      
Sbjct: 12  LPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLTARI 68

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
                 TL   +  Y K      +   + I++ S    I R   D     ITTK I + +
Sbjct: 69  NSDNSVTLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAML 128

Query: 124 ESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
                    +SA    +++   F+ A+ + ++  N   +    K +    R    E ++ 
Sbjct: 129 NGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNHVAATRAAKSEVRRSRLTADEYLKI 188

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE----- 236
           +++  S     RLA E  + +G R  D C      + +    ++  KTG  I +      
Sbjct: 189 YQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTALHI 248

Query: 237 ----LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NKSAH 287
               +            +G ET   +  ++ +++   S +F      +G+       + H
Sbjct: 249 DALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPPTFH 308

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
            +R   +    +   +        G K+   A  Y    DR R
Sbjct: 309 ELR-SLSARLYEKQISDKFAQHLLGHKSDTMASQY--RDDRGR 348


>gi|152972799|ref|YP_001337945.1| site-specific tyrosine recombinase XerC [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|150957648|gb|ABR79678.1| tyrosine recombinase [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
          Length = 300

 Score =  125 bits (314), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 40/259 (15%), Positives = 89/259 (34%), Gaps = 19/259 (7%)

Query: 85  GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIR--SGVESRKH-TPSSAIQFLT 138
             L+  + ++++   D +I    ++G   + +     +R  +    R    P+S    L+
Sbjct: 21  RQLSPITLLNYQRQLDALIALADEAGLKSWSQCDAAQVRSFAVRSRRAGLGPASLALRLS 80

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLA 195
           ++R  F W V Q  ++ NP   +  PK      +    +D+ +            + R  
Sbjct: 81  ALRSFFDWLVGQGELSANPAKGIAAPKIPRHLPKNIDVDDVNRLLDIDLNDPLAVRDRAM 140

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLAMT------ 248
            E +  +GLR S+     ++HL           K      + +    +  +         
Sbjct: 141 LEVMYGAGLRLSELVNLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVAWIEHWLDLRGL 200

Query: 249 -PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAH 305
                +  F++   ++++A      F     + G+N     H +R   AT   ++     
Sbjct: 201 FGTDDDALFLSKLGKRISARNVQKRFAEWGIRQGLNSHVHPHKLRHSFATHMLESSGDLR 260

Query: 306 ELMATYGWKTVDQAETYTK 324
            +    G   +   + YT 
Sbjct: 261 GVQELLGHANLSTTQIYTH 279


>gi|225619262|ref|YP_002720488.1| tyrosine recombinase XerD [Brachyspira hyodysenteriae WA1]
 gi|225214081|gb|ACN82815.1| tyrosine recombinase XerD [Brachyspira hyodysenteriae WA1]
          Length = 309

 Score =  125 bits (314), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 39/279 (13%), Positives = 100/279 (35%), Gaps = 23/279 (8%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYR-----KITTKHIRSGVESRKH 128
           L+ E+       + A ++  S+     +  +   + +         T +   + ++ +  
Sbjct: 17  LLEEFSDYLQTLNFAAHTINSYNKDLKEYFQFLHNKNIPLDEANHYTVRDYLTFLKEKSL 76

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           T S+  + L+S++  +K+ +R  Y   N  + ++ PKR+    +  + +D+    +    
Sbjct: 77  TNSTMSRHLSSIKKFYKYLIRNGYSDKNRIVDMKSPKREEHIAKFLSIDDIDNILAIDDG 136

Query: 189 GS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII-TVELPD---- 239
           G     + ++   F+   GLR S+     +  ++    +++    G+ +  + +      
Sbjct: 137 GDFTLIRDKMMALFMYAIGLRVSELASLKLSMIKKGSETLRICGKGSKVRDIPILPIIYE 196

Query: 240 -------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVR 290
                      +        +  FIN   + ++        K     A +  + S H +R
Sbjct: 197 NWDVYMEKRRIIQREYSENNDYIFINRFGKPISDRSIRTSMKRLIRNANISIDFSPHTLR 256

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              AT   +  A    +    G +T+   + YT   +  
Sbjct: 257 HTFATHLLNNDAEIRGVQELLGHETIATTQRYTHVTNSR 295


>gi|118479053|ref|YP_896204.1| site-specific tyrosine recombinase XerC [Bacillus thuringiensis
           str. Al Hakam]
 gi|228986974|ref|ZP_04147100.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|118418278|gb|ABK86697.1| tyrosine recombinase XerC subunit [Bacillus thuringiensis str. Al
           Hakam]
 gi|228772752|gb|EEM21192.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 302

 Score =  125 bits (314), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 44/272 (16%), Positives = 96/272 (35%), Gaps = 26/272 (9%)

Query: 85  GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLT 138
            + +  +  S+++  +  +    + G   +  IT   +R  +      K    S  + ++
Sbjct: 21  RNYSKYTIASYQNDLEHFVQFMEREGISSFLDITYADVRLYLTTLHDEKLARKSVARKVS 80

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194
           S+R L+++ +R+ Y   NP      PK++    +    E++++           G + + 
Sbjct: 81  SLRSLYRFLMREGYRKDNPFALASLPKKELSIPKFLYAEELEELFEVSDTETPLGQRNQA 140

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE------------LPDGF 241
             E +  +G+R S+     +  +   + +I    K      +             + +G 
Sbjct: 141 LLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQRYIPFGSYAQDALITYIENGR 200

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
            +L   T       F+N     + +            KA +    S H +R   AT   D
Sbjct: 201 KQLAEKTEEQSHMVFLNAKGTPLTSRGVRYVLNELIKKASLTMRISPHMLRHTFATHMLD 260

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            GA    +    G + +   + YT    + RL
Sbjct: 261 EGADLRTVQELLGHENLSTTQIYTH-VSKERL 291


>gi|94266574|ref|ZP_01290258.1| Tyrosine recombinase XerD [delta proteobacterium MLMS-1]
 gi|93452792|gb|EAT03324.1| Tyrosine recombinase XerD [delta proteobacterium MLMS-1]
          Length = 325

 Score =  125 bits (314), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 45/273 (16%), Positives = 89/273 (32%), Gaps = 27/273 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDY-------RKITTKHIRSGVE---SRKHTPSSAI 134
             LA N+  ++ +                      +IT +H+R+ +E    R+    S  
Sbjct: 43  RRLAANTLTAYHTDLLSFFDFLARRRPTPAISGPAEITPEHLRAYLEACRRRQIAARSNA 102

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FWSEGS 190
           + L+++R  F++  R+  +  +P   ++ PK      +    +++ Q  +          
Sbjct: 103 RRLSALRAFFRFLRRENLIPADPSALLDLPKPGRPLPKVLNLDEVNQLLAGPAAATPLAL 162

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250
           +       L  +G+R S+     V  +          K      +       + LA    
Sbjct: 163 RDHAMLHLLYATGMRVSELVNLPVAAVNQAGHLRVLGKGSKERLIPFGAAAGRSLARYIT 222

Query: 251 GKET----------FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISA 298
                          F+ N    M   +F    + +A    ++K    H +R   AT   
Sbjct: 223 QGRPRLLKKRRSDFLFVTNRGTAMTRLRFWQIIRDRARVCRIDKEVGPHVLRHSFATHLL 282

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           + GA    + A  G   +   + YT   D  RL
Sbjct: 283 EHGADLRAVQAMLGHADIATTQIYTH-VDAQRL 314


>gi|255692650|ref|ZP_05416325.1| tyrosine recombinase XerC [Bacteroides finegoldii DSM 17565]
 gi|260621626|gb|EEX44497.1| tyrosine recombinase XerC [Bacteroides finegoldii DSM 17565]
          Length = 293

 Score =  125 bits (314), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 48/276 (17%), Positives = 105/276 (38%), Gaps = 24/276 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIR----KSGDFDYRKITTKHIRSGV---ES 125
           LI  +     +  + +  + +++     Q+      + G+FD  ++  + IR  +     
Sbjct: 2   LIESFLDYLRYERNYSDKTVLAYGEDIRQLQEFAQEEYGEFDPLEVEAELIREWIVSLMD 61

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           + +T +S  + L+++R  +K+ +++  V ++P   +  PK K        + +M +    
Sbjct: 62  KGYTSTSVNRKLSTLRTFYKFLLKKGEVTVDPLRKIVGPKNKKTLPVFLKENEMNKLLDE 121

Query: 186 WS-----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPD 239
                  +G + RL  E    +G+R S+      + +  +   +K T K      +   D
Sbjct: 122 TDFGEGFKGCRDRLIIEMFYATGMRLSELIDLDDKDVDFSGSCLKVTGKRNKQRLIPFGD 181

Query: 240 GFMKLL--------AMTPIGKETFFINNDKQKMNATQFSIWFKA-KATKAGVNK-SAHGV 289
                +         M P   E FF+  + +++         K   +  A + K S H +
Sbjct: 182 ELRDWMLGYIDVRNEMIPERSEAFFVRENGERLYKNLVYNLVKRNLSKVATLKKKSPHVL 241

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           R   AT   +  A    +    G +++   E YT  
Sbjct: 242 RHTFATTMLNNNAELGAVKELLGHESITTTEIYTHA 277


>gi|225852955|ref|YP_002733188.1| phage integrase [Brucella melitensis ATCC 23457]
 gi|256263566|ref|ZP_05466098.1| phage integrase [Brucella melitensis bv. 2 str. 63/9]
 gi|225641320|gb|ACO01234.1| phage integrase [Brucella melitensis ATCC 23457]
 gi|263093614|gb|EEZ17619.1| phage integrase [Brucella melitensis bv. 2 str. 63/9]
          Length = 164

 Score =  125 bits (314), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 60/155 (38%), Gaps = 14/155 (9%)

Query: 205 RCSDSCRAGVQH-------LQN-----NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252
           R  D               L       + F ++  KTG  + + +     ++L  TP   
Sbjct: 9   RRGDIAALRWDQRCSKTVFLDGEAKSVDGFELRQGKTGKRLFLPITPILSEVLEATPRQG 68

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMAT 310
           ET  +    +  +    +         A + K  + HG+RK    I A+ GA+  ++M T
Sbjct: 69  ETVLVTAYGEPFSPKSLTGRMADWTASAKLPKGFTLHGLRKTLGKILAEGGASTRQIMDT 128

Query: 311 YGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345
           +G   +  AE YT+ A++ RL      R+  +  +
Sbjct: 129 FGHDDIAHAELYTREAEQARLATDGMSRVVRLKRN 163


>gi|283781943|ref|YP_003372698.1| integrase family protein [Pirellula staleyi DSM 6068]
 gi|283440396|gb|ADB18838.1| integrase family protein [Pirellula staleyi DSM 6068]
          Length = 314

 Score =  125 bits (314), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 48/305 (15%), Positives = 99/305 (32%), Gaps = 31/305 (10%)

Query: 55  TPKREYINSPRKKPTT-----LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF 109
            P +  +  P                 EY ++     LA NS  +++    +  R  GD 
Sbjct: 2   RPLKPKLVVPAAVAGAGQGDRWARSFIEYLRTE--CHLAKNSVAAYQRDMTRFCRWLGDR 59

Query: 110 DYRKITTKHIRSGVESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
              K+T + +   +   +     P S  + + ++++  ++   +  +  NP   +   K 
Sbjct: 60  FIPKLTVRDLTDYLAFMREENLDPKSIARHVVTLKLFLRYLQLEGIIKDNPAELLGTTKT 119

Query: 167 KTEGIRPWTKEDMQQFKS----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNI 221
                   +     +       +     + R   E L  +G R S+     V+ L+  + 
Sbjct: 120 AATIPDVLSPTVAARLLDAPQPYDPLFRRDRALLELLYATGCRASEVSVMEVRDLRIEDR 179

Query: 222 FSIKTQKTGTIITVELPDGFMKLLAMTPIGKET-------------FFINNDKQKMNATQ 268
           F +   K      V L D  +  +      +                 +++  Q++   +
Sbjct: 180 FCLARGKGSKERLVPLGDPALAAVEAYLEHERPKLAAKSKQGVPPWLLLSSRGQRLTRQK 239

Query: 269 FSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
                K  A + G   S   H +R   AT     GA   ++    G  ++   + YT   
Sbjct: 240 IWELVKQYALRCGAPASMSPHTLRHSFATHLLSGGADLRQVQELLGHASIGTTQIYTH-V 298

Query: 327 DRIRL 331
           D+ RL
Sbjct: 299 DQSRL 303


>gi|210623381|ref|ZP_03293778.1| hypothetical protein CLOHIR_01728 [Clostridium hiranonis DSM 13275]
 gi|210153642|gb|EEA84648.1| hypothetical protein CLOHIR_01728 [Clostridium hiranonis DSM 13275]
          Length = 376

 Score =  125 bits (314), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 46/352 (13%), Positives = 122/352 (34%), Gaps = 39/352 (11%)

Query: 17  RHGKIIYYF---RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP-RKKPTTLK 72
           + G   +Y+   +   G+R ++    +++     +  L  +  +             +  
Sbjct: 14  KRGNTYHYYFDGKTIDGKRNKIEKSAKTSNKSEALKQLEKAIEEYYMSEIDFTLSDISFA 73

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRSGVESRKHTPS 131
               ++        L  ++  +++   ++  I+    +  + I  KHI++ ++       
Sbjct: 74  EAREKFLSEYVANDLKDSTYTNYKQKLNKPQIKVLEIYLLKDIRAKHIQNIIDYMALNGF 133

Query: 132 SAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR--PWTKEDMQQFKSFW 186
           S       L ++  LF + +R E +  NPC  V  P + T+  R    T +++++  + +
Sbjct: 134 SKNMVKNTLRTISSLFNFCIRAELIKDNPCDKVVLPSKLTQPERKVALTNKEVKRILNRF 193

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----------------IFSIKTQKT 229
              +   L+    LY+G+R  + C    +++  +                       +  
Sbjct: 194 K-NTHWYLSLMLPLYTGMRRGECCGLRWKNVDLDKGIIYVRENLTQDKGKKWIISTPKTK 252

Query: 230 GTIITVELPDGFMKLLA----------MTPIGKETFFINNDKQKMNATQFSIWFKAKATK 279
            +I T+ +P   ++ L           +         + ++   +         +     
Sbjct: 253 SSIRTINIPLPLLEALKWQLERNKSNNVATNSDTHVLVRDNGSIITNDTLKYLSRVINYD 312

Query: 280 AGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIR 330
            G+  + H +R   AT+  + GA   ++    G  ++    + Y    D +R
Sbjct: 313 LGIKFNYHNLRHTYATLLIEKGANIKDVSVLLGHASIKTTMDIYVNNTDNMR 364


>gi|30021919|ref|NP_833550.1| site-specific tyrosine recombinase XerC [Bacillus cereus ATCC
           14579]
 gi|29897475|gb|AAP10751.1| Integrase/recombinase (XerC/CodV family) [Bacillus cereus ATCC
           14579]
          Length = 294

 Score =  125 bits (314), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 43/272 (15%), Positives = 97/272 (35%), Gaps = 26/272 (9%)

Query: 85  GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLT 138
            + +  +  S+++  +  +    + G   +  +T   +R  +      K    S  + ++
Sbjct: 13  RNYSKYTIASYQNDLEHFVQFMEREGISSFLDVTYADVRLYLTTLHDEKLARKSVARKVS 72

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194
           S+R L+++ +R+ Y   NP      PK++    +    E++++           G + + 
Sbjct: 73  SLRSLYRFLMREGYRKDNPFALASLPKKELSIPKFLYAEELEELFEVSDTETPLGQRNQA 132

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE------------LPDGF 241
             E +  +G+R S+     +  +   + +I    K      +             + +G 
Sbjct: 133 LLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQRYIPFGSYAQDSLITYIENGR 192

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
            +L+  T       F+N     + +            KA +    S H +R   AT   D
Sbjct: 193 KQLVNKTDEDSHMVFLNAKGTPLTSRGVRYVLNELIKKASLTMRISPHMLRHTFATHMLD 252

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            GA    +    G + +   + YT    + RL
Sbjct: 253 EGADLRTVQELLGHENLSTTQIYTH-VSKERL 283


>gi|309789594|ref|ZP_07684175.1| phage integrase family protein [Oscillochloris trichoides DG6]
 gi|308228330|gb|EFO81977.1| phage integrase family protein [Oscillochloris trichoides DG6]
          Length = 294

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 44/274 (16%), Positives = 109/274 (39%), Gaps = 24/274 (8%)

Query: 75  ISEYRKSAHWGSL-AVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGV---ESRK 127
           I ++  S     + + ++  ++ +  +Q+          D++ +T   I + +     R 
Sbjct: 5   IEQFLVSMATDQMRSEHTCSAYRTDLEQLRLFLAAREVADWQAVTHDDILAFMISLRERG 64

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----- 182
           +  S+  +   +M+  F + + Q+ +  +P   ++ PK   +  +  T+ DM +      
Sbjct: 65  YAMSTMARRTAAMKSFFGFLLEQQIIKKDPTSHIDSPKVNRDRPKAITQFDMDELLELPL 124

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVEL---- 237
           +S   E  + +   E L  +G+R S+     +  +  +  +++   K+G    + +    
Sbjct: 125 RSSGPESLRDKAMLELLAATGMRVSELVTLELADISLSAGTVRCRSKSGRERVLPIGLTA 184

Query: 238 PDGFMKLLAMTP----IGKET--FFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVR 290
                + L +         ET   F+N+  +++    F +  K  A + G+ + + H +R
Sbjct: 185 TTALEEYLDIARNQLVRSGETPILFLNHRGKQLTRQGFWLILKGYADQIGLHDLTPHTLR 244

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              A      GA   E+    G  ++   + YT+
Sbjct: 245 HSFAAHLVYEGADLREVQERLGHASLSTTQIYTQ 278


>gi|218898984|ref|YP_002447395.1| tyrosine recombinase XerC [Bacillus cereus G9842]
 gi|228909656|ref|ZP_04073479.1| Tyrosine recombinase xerC [Bacillus thuringiensis IBL 200]
 gi|228940919|ref|ZP_04103478.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228973848|ref|ZP_04134424.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228980438|ref|ZP_04140748.1| Tyrosine recombinase xerC [Bacillus thuringiensis Bt407]
 gi|218544580|gb|ACK96974.1| tyrosine recombinase XerC [Bacillus cereus G9842]
 gi|228779258|gb|EEM27515.1| Tyrosine recombinase xerC [Bacillus thuringiensis Bt407]
 gi|228785873|gb|EEM33876.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228818755|gb|EEM64821.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228849945|gb|EEM94776.1| Tyrosine recombinase xerC [Bacillus thuringiensis IBL 200]
 gi|326941600|gb|AEA17496.1| site-specific tyrosine recombinase XerC [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 299

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 43/272 (15%), Positives = 97/272 (35%), Gaps = 26/272 (9%)

Query: 85  GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLT 138
            + +  +  S+++  +  +    + G   +  +T   +R  +      K    S  + ++
Sbjct: 18  RNYSKYTIASYQNDLEHFVQFMEREGISSFLDVTYADVRLYLTTLHDEKLARKSVARKVS 77

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194
           S+R L+++ +R+ Y   NP      PK++    +    E++++           G + + 
Sbjct: 78  SLRSLYRFLMREGYRKDNPFALASLPKKELSIPKFLYAEELEELFEVSDTGTPLGQRNQA 137

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE------------LPDGF 241
             E +  +G+R S+     +  +   + +I    K      +             + +G 
Sbjct: 138 LLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQRYIPFGSYAQDSLITYIENGR 197

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
            +L+  T       F+N     + +            KA +    S H +R   AT   D
Sbjct: 198 KQLVNKTDEDSRMVFLNAKGTPLTSRGVRYVLNELIKKASLTMRISPHMLRHTFATHMLD 257

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            GA    +    G + +   + YT    + RL
Sbjct: 258 EGADLRTVQELLGHENLSTTQIYTH-VSKERL 288


>gi|228902334|ref|ZP_04066491.1| Tyrosine recombinase xerC [Bacillus thuringiensis IBL 4222]
 gi|228966776|ref|ZP_04127820.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228792875|gb|EEM40433.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228857303|gb|EEN01806.1| Tyrosine recombinase xerC [Bacillus thuringiensis IBL 4222]
          Length = 299

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 43/272 (15%), Positives = 97/272 (35%), Gaps = 26/272 (9%)

Query: 85  GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLT 138
            + +  +  S+++  +  +    + G   +  +T   +R  +      K    S  + ++
Sbjct: 18  RNYSKYTIASYQNDLEHFVQFMEREGISSFLDVTYADVRLYLTTLHDEKLARKSVARKVS 77

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194
           S+R L+++ +R+ Y   NP      PK++    +    E++++           G + + 
Sbjct: 78  SLRSLYRFLMREGYRKDNPFALASLPKKELSIPKFLYAEELEELFEVSDTETPLGQRNQA 137

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE------------LPDGF 241
             E +  +G+R S+     +  +   + +I    K      +             + +G 
Sbjct: 138 LLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQRYIPFGSYAQDSLITYIENGR 197

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
            +L+  T       F+N     + +            KA +    S H +R   AT   D
Sbjct: 198 KQLVNKTDEDSRMVFLNAKGTPLTSRGVRYVLNELIKKASLTMRISPHMLRHTFATHMLD 257

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            GA    +    G + +   + YT    + RL
Sbjct: 258 EGADLRTVQELLGHENLSTTQIYTH-VSKERL 288


>gi|84686929|ref|ZP_01014813.1| tyrosine recombinase XerD [Maritimibacter alkaliphilus HTCC2654]
 gi|84665126|gb|EAQ11606.1| tyrosine recombinase XerD [Rhodobacterales bacterium HTCC2654]
          Length = 315

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 47/267 (17%), Positives = 88/267 (32%), Gaps = 29/267 (10%)

Query: 90  NSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVR 149
                F  Y D++    G  D   +         E++    S+  + L++++ ++++A  
Sbjct: 33  RDLKDFSGYLDRMGEDFGGADRATVEA--YLIDCEAQGLAVSTRARRLSAIKQIYRFAFE 90

Query: 150 QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ---PRL----AFEFLLYS 202
           + +   NP L +  P +     +  +++D+++  +   +  +    RL      E L  +
Sbjct: 91  EGWRTDNPTLRITGPGKARRLPKTLSEDDVERLLNAARQHGRTDADRLRNACMMEVLYAT 150

Query: 203 GLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKLLAM-------------- 247
           G+R S+     V   + +    +   K G    V L       LA               
Sbjct: 151 GMRVSELVTLPVSAARGDPRMLLVMGKGGKERMVPLSPPARAALAAWLDVRDAAEDAARS 210

Query: 248 --TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAGA 302
                 +  F        +   +F    K  A  AGV     + H +R   AT     GA
Sbjct: 211 KGAKPSRFLFPSTGKDGHLTRHRFHGLIKDIAVAAGVSPETVTPHRLRHAFATHLLAHGA 270

Query: 303 TAHELMATYGWKTVDQAETYTKGADRI 329
               +    G   V   E YT   D  
Sbjct: 271 DLRAIQTLLGHADVSTTEIYTHVLDER 297


>gi|65321158|ref|ZP_00394117.1| COG4974: Site-specific recombinase XerD [Bacillus anthracis str.
           A2012]
          Length = 302

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 44/272 (16%), Positives = 96/272 (35%), Gaps = 26/272 (9%)

Query: 85  GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLT 138
            + +  +  S+++  +  +    + G   +  IT   +R  +      K    S  + ++
Sbjct: 21  RNYSKYTIASYQNDLEHFVQFMEREGISSFLDITYADVRLYLTTLHDEKLARKSVARKVS 80

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194
           S+R L+++ +R+ Y   NP      PK++    +    E++++           G + + 
Sbjct: 81  SLRSLYRFLMREGYRKDNPFALASLPKKELSIPKFLYAEELEELFEVSDTETPLGQRNQA 140

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE------------LPDGF 241
             E +  +G+R S+     +  +   + +I    K      +             + +G 
Sbjct: 141 LLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQRYIPFGSYAQDALITYIENGR 200

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
            +L   T       F+N     + +            KA +    S H +R   AT   D
Sbjct: 201 KQLAEKTEEQSHMVFLNAKGTPLTSRGVRYVLNELIKKASLTMRISPHILRHTFATHMLD 260

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            GA    +    G + +   + YT    + RL
Sbjct: 261 EGADLRTVQELLGHENLSTTQIYTH-VSKERL 291


>gi|228960047|ref|ZP_04121711.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|228799563|gb|EEM46516.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar pakistani
           str. T13001]
          Length = 299

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 43/272 (15%), Positives = 98/272 (36%), Gaps = 26/272 (9%)

Query: 85  GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLT 138
            + +  +  S+++  +  +    + G   +  +T   +R  + +    K    S  + ++
Sbjct: 18  RNYSKYTIASYQNDLEHFVQFMEREGISSFLDVTYADVRLYLTTLYDEKLARKSVARKVS 77

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194
           S+R L+++ +R+ Y   NP      PK++    +    E++++           G + + 
Sbjct: 78  SLRSLYRFLMREGYRKDNPFALASLPKKELSIPKFLYAEELEELFEVSDTETPLGQRNQA 137

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE------------LPDGF 241
             E +  +G+R S+     +  +   + +I    K      +             + +G 
Sbjct: 138 LLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQRYIPFGSYAQDSLITYIENGR 197

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
            +L+  T       F+N     + +            KA +    S H +R   AT   D
Sbjct: 198 KQLVNKTDEDSHMVFLNAKGTPLTSRGVRYVLNELIKKASLTMRISPHMLRHTFATHMLD 257

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            GA    +    G + +   + YT    + RL
Sbjct: 258 EGADLRTVQELLGHENLSTTQIYTH-VSKERL 288


>gi|189465402|ref|ZP_03014187.1| hypothetical protein BACINT_01751 [Bacteroides intestinalis DSM
           17393]
 gi|189437676|gb|EDV06661.1| hypothetical protein BACINT_01751 [Bacteroides intestinalis DSM
           17393]
          Length = 294

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 48/276 (17%), Positives = 99/276 (35%), Gaps = 24/276 (8%)

Query: 73  WLISEYRKSAHW-GSLAVNSRISFESYFDQI----IRKSGDFDYRKITTKHIRSGV---E 124
           WL   +     +  + +  +  S+     Q       + GD    ++  + +R  +    
Sbjct: 2   WLTDSFLDYLQYERNYSEETIKSYREDLRQFEEFAREEIGDSAPSEVKAELVREWIVSLM 61

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
            R +T +S  + L+S+R  +K+ +R+  VA+NP   +  PK K        + DM +   
Sbjct: 62  DRGYTSTSINRKLSSLRSFYKFLLRKGEVAVNPLQKITGPKNKKPLPAFLRESDMDRLLD 121

Query: 185 FWS-----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELP 238
                   +G +  +  E    +G+R S+      + +  +   IK T K      +   
Sbjct: 122 EVDFGEGFKGCRDHMIIEMFYATGVRLSELIGLDNKDVDFSSSLIKVTGKRNKQRLIPFG 181

Query: 239 DGFMKLLA--------MTPIGKETFFINNDKQKMNATQFSIWFKA--KATKAGVNKSAHG 288
           +     +           PI    FF+  + ++++ +      K           +S H 
Sbjct: 182 EELKIAMMEYVDVRNEAVPIRTNAFFVRENGERLSRSIVENLVKRNLSKVVTLKKRSPHV 241

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +R   AT   +  A    +    G +++   E YT 
Sbjct: 242 LRHTFATTMLNHDAELGAIKELLGHESLATTEVYTH 277


>gi|288559967|ref|YP_003423453.1| tyrosine recombinase XerC [Methanobrevibacter ruminantium M1]
 gi|288542677|gb|ADC46561.1| tyrosine recombinase XerC [Methanobrevibacter ruminantium M1]
          Length = 326

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 47/275 (17%), Positives = 97/275 (35%), Gaps = 25/275 (9%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISF----ESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
            + ++  Y       + + N+  ++     S  D +  + G +D RK      +   + +
Sbjct: 39  FEEMLENYIIEMEIRNYSENTVKTYSSIIRSMIDYMSSEEGVYDGRKFLACFKKYIRDLK 98

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
           K    S      +  V  K+    +   +     V+ PKR     +  T+++++      
Sbjct: 99  KDQDVSQNYIYLNTVVCKKFLEFNDIYFL---EDVQNPKRTKSLPKSLTEKEVKSLIDAV 155

Query: 187 -----------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
                          + ++  EFL  +GLR S+  +   + +  +  +I+ +  G    +
Sbjct: 156 QITDEDSELKKKAKMRDKVILEFLYSTGLRISELVKLQKKDIDFDERTIRVRGKGEKDRI 215

Query: 236 ELPDG-----FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288
            L D          +       E  FIN + +K+      +  K  A KAG+ K  + H 
Sbjct: 216 VLFDENTRDLIDNYIETQNQKSEYLFINKNGRKLTPRYVQMMIKEYAEKAGIKKKVTPHV 275

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           +R   AT     G     +    G  ++   + YT
Sbjct: 276 LRHSFATHLLKNGVDIRVIQQLLGHSSLSTTQIYT 310


>gi|254476039|ref|ZP_05089425.1| tyrosine recombinase XerD [Ruegeria sp. R11]
 gi|214030282|gb|EEB71117.1| tyrosine recombinase XerD [Ruegeria sp. R11]
          Length = 332

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 40/272 (14%), Positives = 92/272 (33%), Gaps = 32/272 (11%)

Query: 88  AVNSRISFESYFDQII-----RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRV 142
           A N+ +++      +      R+ G     +   +      ++   + ++  + L++++ 
Sbjct: 25  AHNTLLAYGRDLKDVAAWLAARQIGFETASRDQIESYLIACDAEGLSRATRARRLSAIKQ 84

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-------SEGSQPRLA 195
           ++++A  + +   NP + ++ P R+    +     ++ +             +  +    
Sbjct: 85  IYRFAFDEGWRDDNPAIQIKGPGRQKSLPKTLEVIEVDKLLDAARQSGRNLPDRIRNTCL 144

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE- 253
            E L  +G+R S+     V   + +    +   K G    V L       LA     ++ 
Sbjct: 145 MELLYATGMRVSELVGLPVTAARGDPRMLLVLGKGGKERMVPLSPPARDALAAWLAHRDK 204

Query: 254 -------------TFFINNDKQ--KMNATQFSIWFKAKATKAGV---NKSAHGVRKFSAT 295
                         +   +  +   +   +F +  K  A  AG+     S H +R   AT
Sbjct: 205 AEEAAVAKGAPPSRYLFPSRGKSGHLTRHRFYLLIKEFAVTAGISPEAVSPHTLRHAFAT 264

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGAD 327
                GA    + A  G   +   E YT   D
Sbjct: 265 HLLANGADLRAIQALLGHADIATTEIYTHVLD 296


>gi|15615028|ref|NP_243331.1| integrase/recombinase [Bacillus halodurans C-125]
 gi|34223073|sp|Q9KA25|XERC_BACHD RecName: Full=Tyrosine recombinase xerC
 gi|10175085|dbj|BAB06184.1| integrase/recombinase [Bacillus halodurans C-125]
          Length = 303

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 49/271 (18%), Positives = 98/271 (36%), Gaps = 28/271 (10%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRKHTPSSAIQFLTSMR 141
           + ++ +++E                          +H  + +  +++  S+  + L+++R
Sbjct: 23  SPHTIVNYELDLRHFRDFMEQQSIPSFAAVSYAFVRHYLTVLYEQEYARSTVSRKLSTLR 82

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLAFE 197
             +++ VR+++V  NP L    PK   +      +E+M+Q             + R  FE
Sbjct: 83  SFYQFLVREKWVMENPFLLAHTPKGVKKLPSFLYEEEMEQLLDALNGDSPLQLRNRALFE 142

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVEL------------PDGFMKL 244
            +  SGLR S+ C   +Q +  +I ++    K      V +             +G  KL
Sbjct: 143 TIYASGLRVSECCGLKLQDVDLSIGTVFVFGKGRKERYVPIGSFACDAIQEYIENGREKL 202

Query: 245 LAMTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADA 300
           L  +         F+N     +              +A +    S H +R   AT   + 
Sbjct: 203 LKKSKSVDLPGDLFLNYRGGPLTERGVRKILHQALDQAALSTRVSPHSLRHSFATHLLNN 262

Query: 301 GATAHELMATYGWKTVDQAETYTK-GADRIR 330
           GA    +    G + +   + YT    DR+R
Sbjct: 263 GADLRVVQDLLGHENLSTTQVYTHVTKDRLR 293


>gi|262091726|gb|ACY25315.1| tyrosine recombinase XerD [uncultured actinobacterium]
          Length = 311

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 34/271 (12%), Positives = 86/271 (31%), Gaps = 28/271 (10%)

Query: 85  GSLAVNSRISFESYFDQ-----IIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
              +  +  ++     +     +++       +    +   + + +      S  +   +
Sbjct: 18  QGRSPRTIEAYRRDLHRYEAFLVLKSCDVLSVQSPVIEQFIASLRAEGKAAKSVARMYAA 77

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FWSEGSQPRLA 195
           +R++ ++ + +     NP   V+  K  +   +  +++++ +  +      S   + R  
Sbjct: 78  VRMMHRYLIEERLRPDNPTSGVDGVKVPSGIPKALSEDEVARILASVTGVDSFALRDRAL 137

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLA-------- 246
            EFL  +G R S++C   +  L      ++   K      V         L         
Sbjct: 138 LEFLYATGARISEACGLSLSDLDMESQLVRLFGKGSKERIVPFGSHAKAALEEWLGAGGR 197

Query: 247 --------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKA--GVNKSAHGVRKFSATI 296
                         +  F+ +   +++        +  A  A  G   S H +R   AT 
Sbjct: 198 TMLVSEQWAKRDHADAVFLGSRGTRLSRQAAWRIVQKFAQIAEVGDEVSPHVLRHSCATH 257

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGAD 327
               GA    +    G  +V   + YT+  +
Sbjct: 258 MLIHGADLRIVQELLGHASVSTTQVYTRVDN 288


>gi|255524155|ref|ZP_05391115.1| integrase family protein [Clostridium carboxidivorans P7]
 gi|296186613|ref|ZP_06855015.1| putative tyrosine recombinase XerD [Clostridium carboxidivorans P7]
 gi|255512140|gb|EET88420.1| integrase family protein [Clostridium carboxidivorans P7]
 gi|296048650|gb|EFG88082.1| putative tyrosine recombinase XerD [Clostridium carboxidivorans P7]
          Length = 292

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 45/279 (16%), Positives = 104/279 (37%), Gaps = 24/279 (8%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVESRKHTPS 131
           +Y ++    +++ N+  ++     +       R     +   ++       ++      S
Sbjct: 7   KYIENLEKKNVSKNTMDAYVRDISKFYNFIKERNENVVEIEVVSIMAYVQQLQKEGRATS 66

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS- 190
           S I+ + S+R  +K+   + ++  NP ++ E PK K    +  T E++    S    G+ 
Sbjct: 67  SIIRNIVSLRNFYKYLTIKGFINENPMINYEIPKVKHNIPKILTVEEVDTLLSTPDLGTN 126

Query: 191 ---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI--------ITVELPD 239
              + +   E L  +G++ ++     +  +   +  IK + +           I ++   
Sbjct: 127 KGIRDKAMLEVLYATGMKVTEILNITIYDINLKLAYIKCKGSKNQERIIPIGSIAIQCLQ 186

Query: 240 GFMKLL-AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAH----GVRKFSA 294
            ++K+   +     +  FIN    +M    F    K  A  AGV+K  H     +R   A
Sbjct: 187 EYLKIRSQINIYNLDLLFINLRGIQMTRQGFWKIVKYYAKAAGVDK--HINAFTLRHSFA 244

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
                 GA    +    G K +   + Y+  + + ++  
Sbjct: 245 VHLLQNGADIKSVQELLGHKDLSATQIYSSISRKNKIAE 283


>gi|62290365|ref|YP_222158.1| phage integrase family site specific recombinase [Brucella abortus
           bv. 1 str. 9-941]
 gi|82700287|ref|YP_414861.1| phage integrase [Brucella melitensis biovar Abortus 2308]
 gi|237815868|ref|ZP_04594865.1| phage integrase family site specific recombinase [Brucella abortus
           str. 2308 A]
 gi|254689663|ref|ZP_05152917.1| Phage integrase [Brucella abortus bv. 6 str. 870]
 gi|254697806|ref|ZP_05159634.1| Phage integrase [Brucella abortus bv. 2 str. 86/8/59]
 gi|254730695|ref|ZP_05189273.1| Phage integrase [Brucella abortus bv. 4 str. 292]
 gi|256257914|ref|ZP_05463450.1| Phage integrase [Brucella abortus bv. 9 str. C68]
 gi|260546903|ref|ZP_05822642.1| phage integrase [Brucella abortus NCTC 8038]
 gi|260755194|ref|ZP_05867542.1| integrase/recombinase [Brucella abortus bv. 6 str. 870]
 gi|260758413|ref|ZP_05870761.1| integrase/recombinase [Brucella abortus bv. 4 str. 292]
 gi|260762239|ref|ZP_05874582.1| integrase/recombinase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260884210|ref|ZP_05895824.1| integrase/recombinase [Brucella abortus bv. 9 str. C68]
 gi|297248750|ref|ZP_06932468.1| phage integrase [Brucella abortus bv. 5 str. B3196]
 gi|62196497|gb|AAX74797.1| site-specific recombinase, phage integrase family [Brucella abortus
           bv. 1 str. 9-941]
 gi|82616388|emb|CAJ11449.1| Phage integrase [Brucella melitensis biovar Abortus 2308]
 gi|237789166|gb|EEP63377.1| phage integrase family site specific recombinase [Brucella abortus
           str. 2308 A]
 gi|260095953|gb|EEW79830.1| phage integrase [Brucella abortus NCTC 8038]
 gi|260668731|gb|EEX55671.1| integrase/recombinase [Brucella abortus bv. 4 str. 292]
 gi|260672671|gb|EEX59492.1| integrase/recombinase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260675302|gb|EEX62123.1| integrase/recombinase [Brucella abortus bv. 6 str. 870]
 gi|260873738|gb|EEX80807.1| integrase/recombinase [Brucella abortus bv. 9 str. C68]
 gi|297175919|gb|EFH35266.1| phage integrase [Brucella abortus bv. 5 str. B3196]
          Length = 164

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 59/155 (38%), Gaps = 14/155 (9%)

Query: 205 RCSDSCRAGVQH-------LQN-----NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252
           R  D               L       + F ++  KTG  + + +     ++L  TP   
Sbjct: 9   RRGDIAALRWDQRCSKTVFLDGEAKSVDGFELRQGKTGKRLFLPITPILSEVLEATPRQG 68

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMAT 310
           ET  +    +  +    +         A + K  + HG+RK    I A+ GA+  ++M T
Sbjct: 69  ETVLVTAYGEPFSPKSLTGRMVDWTASAKLPKGFTLHGLRKTLGKILAEGGASTRQIMDT 128

Query: 311 YGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345
            G   +  AE YT+ A++ RL      R+  +  +
Sbjct: 129 LGHDDIAHAELYTREAEQARLATDGMSRVVRLKRN 163


>gi|217969617|ref|YP_002354851.1| tyrosine recombinase XerD [Thauera sp. MZ1T]
 gi|217506944|gb|ACK53955.1| tyrosine recombinase XerD [Thauera sp. MZ1T]
          Length = 309

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 49/275 (17%), Positives = 92/275 (33%), Gaps = 23/275 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----SRKHTPSSAIQFLTSM 140
             LA N+   + S   +          R                SR   P+S  + + + 
Sbjct: 31  HGLARNTLAGYRSDLARFAAWLETRAQRLPAAAGADLAAYLAEFSRAAKPASQRRLIAAW 90

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAF 196
           R  ++  +    +A +P L+++ P+      +  ++  ++   +       +G + R   
Sbjct: 91  RRYYRLLLANREIAEDPTLAIDTPRAAERFPKTLSEPQVEALLAAPALDTPQGLRDRCML 150

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDGFMKLLAM-------- 247
           E L  +GLR S+     +  +  N   ++    G+    V L +     L          
Sbjct: 151 EVLYAAGLRVSELVGLKIFAVGVNEGVVRVMGKGSKERLVPLGEIAADWLQRYLAEARPV 210

Query: 248 --TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGA 302
                  +  F+      M+   F    K  A  AG+     S H +R   AT   + GA
Sbjct: 211 LLAGRSCDEIFVTRLGAAMSRQMFWRLIKHYALAAGIAPERISPHTLRHAFATHLLNHGA 270

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
               +    G   +   + YT  A R RL   ++R
Sbjct: 271 DLRVVQLLLGHADISTTQIYTHVA-RERLKQLHAR 304


>gi|218283546|ref|ZP_03489536.1| hypothetical protein EUBIFOR_02126 [Eubacterium biforme DSM 3989]
 gi|218215814|gb|EEC89352.1| hypothetical protein EUBIFOR_02126 [Eubacterium biforme DSM 3989]
          Length = 291

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 45/270 (16%), Positives = 93/270 (34%), Gaps = 19/270 (7%)

Query: 74  LISEYRKSAHWGS-LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK----H 128
           LI  + K  +  +  +  +  S+++  +Q              +    + +         
Sbjct: 4   LIERFLKYIYRKNTQSEKTIESYKNDLNQFKEYLTSQSIDSFESCDRLTFMNFLATLDHL 63

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-- 186
             SS  + ++  R  + +      +  NP + ++ PK+  +       E++Q+F + +  
Sbjct: 64  KASSIARKMSVYRSFYTYLAEYMGIIENPLIGIQTPKKSKQIPDFLFVEEIQEFLNSYND 123

Query: 187 --SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243
              +  + R+ F  +   GLR S+      + +  NN       K      V    GF K
Sbjct: 124 EKDDEYRDRILFTIMYACGLRVSECVNLEWKQIDLNNRIVHIRGKGDKDRIVPFYQGFEK 183

Query: 244 LLAMTPIG-------KETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSA 294
            L              +  F+N   + +++          ATK G++     H +R   A
Sbjct: 184 ELLEYKSKFWTKYAIDDHVFVNLKGKSLSSRGVQYLMDKHATKIGMHMKLHPHMLRHSFA 243

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324
           T   D GA    +    G  ++   + YT 
Sbjct: 244 THLLDNGADIRVVQELLGHSSLSTTQIYTH 273


>gi|229162767|ref|ZP_04290724.1| Tyrosine recombinase xerC [Bacillus cereus R309803]
 gi|228620649|gb|EEK77518.1| Tyrosine recombinase xerC [Bacillus cereus R309803]
          Length = 302

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 43/272 (15%), Positives = 96/272 (35%), Gaps = 26/272 (9%)

Query: 85  GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLT 138
            + +  +  S+++  +  +    + G   +  +T   +R  +      K    S  + ++
Sbjct: 21  RNYSKYTIASYQNDLEHFVQFMEREGISSFLDVTYADVRLYLTTLHDEKLARKSVARKVS 80

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194
           S+R L+++ +R+ Y   NP      PK++    +    E++++           G + + 
Sbjct: 81  SLRSLYRFLMREGYRTDNPFALASLPKKELSIPKFLYAEELEELFEVSDTETPLGQRNQA 140

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE------------LPDGF 241
             E +  +G+R S+     +  +   + +I    K      +             + +G 
Sbjct: 141 LLELMYGTGIRVSECVNLQLTDIDFAVGTILVMGKGKKQRYIPFGSYAQDALITYIENGR 200

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
            +L   T       F+N     + +            KA +    S H +R   AT   D
Sbjct: 201 KQLANKTEEHSHMVFLNAKGTPLTSRGVRYVLNELIKKASLTMRISPHMLRHTFATHMLD 260

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            GA    +    G + +   + YT    + RL
Sbjct: 261 EGADLRTVQELLGHENLSTTQIYTH-VSKERL 291


>gi|169830964|ref|YP_001716946.1| phage integrase family protein [Candidatus Desulforudis audaxviator
           MP104C]
 gi|169637808|gb|ACA59314.1| phage integrase family protein [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 283

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 47/264 (17%), Positives = 89/264 (33%), Gaps = 17/264 (6%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQII--------RKSGDFDYRKITTKHIRSGVESRKHT 129
           +        L+V +  ++ +                        +     R  + ++   
Sbjct: 4   FLDHLKARGLSVQTVGTYAAAVRAFAKWWEGTGGEAFDPASVSSLDVADYRRHLLNKNRK 63

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF-KSFWSE 188
           P++    L ++   F WAV      I+P   V R   +    R  T+ ++    ++    
Sbjct: 64  PATVNLHLDALSSFFSWAVSTGLALIDPTEGVRRVPGQKSSPRWLTRRELGALVRAVQKH 123

Query: 189 G-SQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDGFMK 243
           G S+ R     LL++GLR S++    VQ      ++   +++  K      V L     K
Sbjct: 124 GASRDRALVALLLHAGLRVSEAVSLKVQDAVIRERSGHVAVRRGKGEKYREVPLNATARK 183

Query: 244 LLAM---TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADA 300
           ++        G E  F   +   M         K  A  AGV  + H +R     +  DA
Sbjct: 184 MIQEWLDGHPGGEYLFPGRNGGPMTPRAVQKRLKELARLAGVEVTPHKLRHTFCKMLVDA 243

Query: 301 GATAHELMATYGWKTVDQAETYTK 324
           G +   +    G   ++    YT+
Sbjct: 244 GESLDRVAVLAGHANLNTTARYTR 267


>gi|119385146|ref|YP_916202.1| phage integrase family protein [Paracoccus denitrificans PD1222]
 gi|119374913|gb|ABL70506.1| phage integrase family protein [Paracoccus denitrificans PD1222]
          Length = 230

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 39/230 (16%), Positives = 78/230 (33%), Gaps = 16/230 (6%)

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER---PKRKTEGIRPWTKEDM 179
           ++   H    A     ++ ++ K  +R+ ++  NP   +ER   PK + +   PW    +
Sbjct: 1   MDKNTHRVRFANYIPVAISMIAKEVIRKRWLTDNPAKGIERLNVPKNRRQPHIPWPDIAV 60

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---NNIFSIKTQKTGTIITVE 236
           Q++++    G   RL FE  + S  R  D                  ++  K    + + 
Sbjct: 61  QKWRA--EAGPLERLIFEIGVGSVQRPGDWVCFTWGDYDPAGTGTLRLRQSKGDKPLILP 118

Query: 237 LPDGFMKLLAM-------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHG 288
             +     L         +P+         D  +M+  + +     +  + G+     H 
Sbjct: 119 CTEALKAALDAAKAALPFSPLPSRHIITKQDGSRMDYRRMAEIMLKERRRLGLEAYDLHA 178

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338
           +R       A AG    E+M+  G  T      Y   A +I    +   +
Sbjct: 179 LRYRGVMELAWAGCDDDEIMSYSGHSTKAMVRKYAGEARQIMRARQARAK 228


>gi|28198301|ref|NP_778615.1| phage-related integrase [Xylella fastidiosa Temecula1]
 gi|182680938|ref|YP_001829098.1| integrase family protein [Xylella fastidiosa M23]
 gi|28056371|gb|AAO28264.1| phage-related integrase [Xylella fastidiosa Temecula1]
 gi|182631048|gb|ACB91824.1| integrase family protein [Xylella fastidiosa M23]
 gi|307579406|gb|ADN63375.1| integrase family protein [Xylella fastidiosa subsp. fastidiosa
           GB514]
          Length = 339

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 63/333 (18%), Positives = 116/333 (34%), Gaps = 28/333 (8%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
           +P F  + + + G + YY+  G   R   P          Y  A+     + E+      
Sbjct: 11  IPRFRVRPQ-KSGVVYYYYDHGGKPRKETPLG------RDYGLAI-KRWAELEHAQITPA 62

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVE 124
              T + +   YR      + A N++     Y + +++   D    +  I   +IR  ++
Sbjct: 63  IAVTFRHVAERYRAEVI-PTKAYNTQRMHHVYLNYLLQFFDDPPAPFESIKPVNIRQYLD 121

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVA-INPCLSVERPKRKTEGIRPWTKEDMQQFK 183
            R     SA + +     L+ WA  +      NPC  + R K +   +      D   ++
Sbjct: 122 WRPFKV-SANREVALFSHLWNWARSKGITDLPNPCGGIRRNKERGRDVYI----DDTTYR 176

Query: 184 SFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
           + +    Q  R A +    +G R SD      +H+ N    I   KTG  + + +     
Sbjct: 177 AVYQAADQTLRDAMDLAYLTGQRVSDVVSMDERHIVNGALEICQAKTGVKLAIAITGELA 236

Query: 243 KLLAMTPIGKE-------TFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKF 292
            L+      K           ++     +N  + +  F+     AG+ K       +R  
Sbjct: 237 VLIKRIFDRKRGMKLRSTRLIVDEKGLGLNWKKLAYRFRKVRAAAGIAKEVFQFRDLRAK 296

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKG 325
           +AT  AD      +  A  G  +V   E Y + 
Sbjct: 297 AATDKADLAGDMRQAQAQLGHASVTMTEHYVRK 329


>gi|123440588|ref|YP_001004582.1| site-specific tyrosine recombinase XerC [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|122087549|emb|CAL10330.1| putative integrase/recombinase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 303

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 43/259 (16%), Positives = 89/259 (34%), Gaps = 19/259 (7%)

Query: 85  GSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLT 138
             L+  +  S+      ++    + G   ++ +    +RS V   K      SS    L+
Sbjct: 23  RQLSPLTITSYRRQLQALMEMGEQMGLAHWQTLDAAQVRSLVSRSKRAGLHSSSLALRLS 82

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLA 195
           ++R    W V Q  +  NP   V  P+      +    +++ +            + R  
Sbjct: 83  ALRSFLNWLVSQGVLQANPAKGVSTPRSGRHLPKNIDVDEVAKLLDIDLNDPLAVRDRAM 142

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI--------ITVELPDGFMKLLAM 247
            E +  +GLR S+      +H+      +     G+           V+  D +++L  +
Sbjct: 143 LEVMYGAGLRLSELVGMNCKHVDLASGEVWVMGKGSKERKVPIGKTAVKWLDHWLELREL 202

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAH 305
                +  F+ N  ++++A      F     K GV  +   H +R   AT   ++     
Sbjct: 203 FEPQDDAIFLANTGKRISARNVQKRFAEWGVKQGVSSHIHPHKLRHSFATHMLESSGDLR 262

Query: 306 ELMATYGWKTVDQAETYTK 324
            +    G   +   + YT 
Sbjct: 263 AVQELLGHANLTTTQIYTH 281


>gi|145300550|ref|YP_001143391.1| tyrosine recombinase XerC [Aeromonas salmonicida subsp. salmonicida
           A449]
 gi|142853322|gb|ABO91643.1| tyrosine recombinase XerC [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 322

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 48/294 (16%), Positives = 102/294 (34%), Gaps = 22/294 (7%)

Query: 53  GSTPKREYINSPRKKPTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS---GD 108
              P +    +    P +L   ++ + +       L+ ++R ++ES+   +  +    G 
Sbjct: 2   AREPAKASAPAAEPLPASLADELAAFIEYLRVERQLSPHTRSNYESHLQAMAAELVRLGV 61

Query: 109 FDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165
            D+ ++    +RS V         P S    ++++R    W VRQ  +  NP   +  PK
Sbjct: 62  SDWARLEASQVRSLVTRMHKAGLAPRSLSTKISALRSFCDWQVRQGRLTANPARGIVTPK 121

Query: 166 RKTEGIRPWTKEDMQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221
           +     +    ++M Q  +          + R   E +  SGLR ++     +  ++ + 
Sbjct: 122 QGRPLPKNLDVDEMYQLLNITDEQDPLAVRDRAIMELMYSSGLRLAELVGLNLGDIKLDD 181

Query: 222 FSIKTQKTGTIITV---------ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW 272
             +K    G+   V          L         +     +  F++  KQ+++A      
Sbjct: 182 RQLKVTGKGSRERVLPMGRMAVEWLHKWLKVRPLLAGDEADALFVSKRKQRLSARSVQER 241

Query: 273 FKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
                 K  +N     H +R   AT   ++      +    G   +   + YT 
Sbjct: 242 LDGWGNKQALNAHVHPHKLRHSFATHMLESSGDLRAVQELLGHADLSTTQIYTH 295


>gi|77918417|ref|YP_356232.1| site-specific recombinase/integrase [Pelobacter carbinolicus DSM
           2380]
 gi|77544500|gb|ABA88062.1| site-specific recombinase/integrase [Pelobacter carbinolicus DSM
           2380]
          Length = 396

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 62/339 (18%), Positives = 118/339 (34%), Gaps = 26/339 (7%)

Query: 9   PFVTKERTRHGKIIY--YFRKGHGRRIRLPYPH---ESTFIPAYMSALTGSTPKREYINS 63
           P +       G   +   +R    ++     P+   E        + +  +    E + S
Sbjct: 38  PGLHICVNMRGNKRWLFRYRLYGRKKAVAIGPYPAIEPPLAKQMANEMQRNLALGEPVVS 97

Query: 64  PR---KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
           PR   K+         EY + A       + +  +    +QII K G+     +T K I+
Sbjct: 98  PRAQQKQQKAFGEFAREYLEHA--KQTKKSWKDDYNKLTNQIIPKWGEVPLTCLTPKEIQ 155

Query: 121 SGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPWTK 176
             +   K     ++A +    + VL+  AV+   +    NP   V + +      R  + 
Sbjct: 156 GYLNQVKARTSGTNANRHYAVLNVLYNLAVKWGEIDPGKNPMPGVSKFRDNPGRTRYLSM 215

Query: 177 EDMQQFKSFWSE--GSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTI 232
           E+ ++F +   E  G     A   LL++G R  +  ++  + +  +     +   K G  
Sbjct: 216 EECKRFLAALEEVPGQLAACALRLLLFTGCRAGEVLKSKWEDVSMEGRTMLLPETKNGKS 275

Query: 233 ITVELPD----GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--- 285
             V L         KL A         F  + + K   T     F+     AG+  +   
Sbjct: 276 RVVHLNPLSLAEIEKLKAFRQPNNPYLFPGSSEDKPLGTVRKT-FEHALKLAGLEGTDVV 334

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            H +R   A++ A+ G +   +  + G  +V   E Y  
Sbjct: 335 IHTLRHTHASLLANLGESLETIKVSLGHSSVKMTERYAH 373


>gi|32474160|ref|NP_867154.1| integrase/recombinase [Rhodopirellula baltica SH 1]
 gi|32444697|emb|CAD74699.1| integrase/recombinase [Rhodopirellula baltica SH 1]
          Length = 325

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 46/292 (15%), Positives = 98/292 (33%), Gaps = 23/292 (7%)

Query: 56  PKREYINSPRKKPTTLKWLISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI 114
            + +   +    P+  + +  E+         LA N+  ++     + +          +
Sbjct: 17  QQLKSGQTESVAPSAGQAVCDEFLVYLKRECHLADNTVAAYGRDMKRFVTWMDGRRPADL 76

Query: 115 TT---KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
           T        + +      P+S  + + ++R  FK+   +     NP   +   K      
Sbjct: 77  TITELSDFVASLHGEGLAPASISRAIVAIRTFFKYLQLEGITVDNPAELLATQKAWQRMP 136

Query: 172 RPWTKEDMQQFKSFWSEG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227
              +  +++ F S   +      + R   E L  +G R S+ C   V+ L  +  +++  
Sbjct: 137 GVLSPNEVEAFLSAVKKSDSFWQRDRALLEVLYATGCRASEVCTLRVRDLTLDEKTLRCH 196

Query: 228 KTGTI-------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274
             G               I + L +    L    P   +  F++   + ++  Q     K
Sbjct: 197 GKGDKQRMVPIGGRAIRAIQLYLEESRHILADRNPGQIDELFLSRGGKALDRIQLWRLVK 256

Query: 275 AKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             A +AG+    S H +R   AT     GA   ++    G  ++   + YT 
Sbjct: 257 RYAKRAGISDEISPHSLRHSFATHLLAGGADLRQVQEMLGHASIQTTQIYTH 308


>gi|325954362|ref|YP_004238022.1| Tyrosine recombinase xerC [Weeksella virosa DSM 16922]
 gi|323436980|gb|ADX67444.1| Tyrosine recombinase xerC [Weeksella virosa DSM 16922]
          Length = 301

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 53/277 (19%), Positives = 101/277 (36%), Gaps = 27/277 (9%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVESRKH 128
           I  +     +    ++++  ++    D       I +S D    K    HIRS + S   
Sbjct: 4   IQRFLDYLQYEKRYSLHTIKNYRRDLDDFLSFYQIEESSD-SIEKAEKNHIRSFIISLSD 62

Query: 129 T---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
                 S  + L+S+R  + + ++   +  +P L ++  K K E I P+T+++MQ+    
Sbjct: 63  KNISERSINRKLSSLRTFYIYLIKTGQLTTSPMLQIKSLKTKKEVIIPYTEKEMQRLFEL 122

Query: 186 WSE------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELP 238
            +       G + RL       +G+R  +  +  +  L+     IK   K      + + 
Sbjct: 123 ENIFPDDFDGIRDRLMMNLFYQTGIRRGELIQLTLPQLRIEQKEIKVLGKRNKERVLPIG 182

Query: 239 DGFM-KLLAMTPIGKE-------TFFINNDKQKMNATQFSIWFKAKA--TKAGVNKSAHG 288
           +  + +      + KE       T FI N+ Q +                     KS H 
Sbjct: 183 ENLVSEFTRYLKVRKEVVGSENLTLFIKNNGQALYEKFVYERVNYYLSFITEKHKKSPHV 242

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           +R   AT   + GA  + L    G  ++   + YT  
Sbjct: 243 LRHTFATQLLENGADLNALKEILGHSSLSSTQIYTHS 279


>gi|225627919|ref|ZP_03785955.1| phage integrase family site specific recombinase [Brucella ceti
           str. Cudo]
 gi|254694153|ref|ZP_05155981.1| phage integrase [Brucella abortus bv. 3 str. Tulya]
 gi|254702191|ref|ZP_05164019.1| phage integrase [Brucella suis bv. 5 str. 513]
 gi|254710513|ref|ZP_05172324.1| phage integrase [Brucella pinnipedialis B2/94]
 gi|254714506|ref|ZP_05176317.1| phage integrase [Brucella ceti M644/93/1]
 gi|254717404|ref|ZP_05179215.1| phage integrase [Brucella ceti M13/05/1]
 gi|256032006|ref|ZP_05445620.1| phage integrase [Brucella pinnipedialis M292/94/1]
 gi|256045098|ref|ZP_05447999.1| phage integrase [Brucella melitensis bv. 1 str. Rev.1]
 gi|256061527|ref|ZP_05451671.1| phage integrase [Brucella neotomae 5K33]
 gi|256114028|ref|ZP_05454805.1| phage integrase [Brucella melitensis bv. 3 str. Ether]
 gi|256160204|ref|ZP_05457898.1| phage integrase [Brucella ceti M490/95/1]
 gi|256255410|ref|ZP_05460946.1| phage integrase [Brucella ceti B1/94]
 gi|256369890|ref|YP_003107401.1| site-specific recombinase, phage integrase family [Brucella microti
           CCM 4915]
 gi|260169143|ref|ZP_05755954.1| site-specific recombinase, phage integrase family protein [Brucella
           sp. F5/99]
 gi|260565302|ref|ZP_05835786.1| phage integrase [Brucella melitensis bv. 1 str. 16M]
 gi|261214456|ref|ZP_05928737.1| integrase/recombinase [Brucella abortus bv. 3 str. Tulya]
 gi|261219235|ref|ZP_05933516.1| integrase/recombinase [Brucella ceti M13/05/1]
 gi|261222614|ref|ZP_05936895.1| integrase/recombinase [Brucella ceti B1/94]
 gi|261318084|ref|ZP_05957281.1| integrase/recombinase [Brucella pinnipedialis B2/94]
 gi|261322296|ref|ZP_05961493.1| integrase/recombinase [Brucella ceti M644/93/1]
 gi|261325538|ref|ZP_05964735.1| integrase/recombinase [Brucella neotomae 5K33]
 gi|261752763|ref|ZP_05996472.1| integrase/recombinase [Brucella suis bv. 5 str. 513]
 gi|261758653|ref|ZP_06002362.1| phage integrase [Brucella sp. F5/99]
 gi|265989118|ref|ZP_06101675.1| integrase/recombinase [Brucella pinnipedialis M292/94/1]
 gi|265991531|ref|ZP_06104088.1| integrase/recombinase [Brucella melitensis bv. 1 str. Rev.1]
 gi|265995369|ref|ZP_06107926.1| integrase/recombinase [Brucella melitensis bv. 3 str. Ether]
 gi|265998579|ref|ZP_06111136.1| integrase/recombinase [Brucella ceti M490/95/1]
 gi|294852794|ref|ZP_06793467.1| phage integrase [Brucella sp. NVSL 07-0026]
 gi|225617082|gb|EEH14128.1| phage integrase family site specific recombinase [Brucella ceti
           str. Cudo]
 gi|256000053|gb|ACU48452.1| site-specific recombinase, phage integrase family [Brucella microti
           CCM 4915]
 gi|260151370|gb|EEW86464.1| phage integrase [Brucella melitensis bv. 1 str. 16M]
 gi|260916063|gb|EEX82924.1| integrase/recombinase [Brucella abortus bv. 3 str. Tulya]
 gi|260921198|gb|EEX87851.1| integrase/recombinase [Brucella ceti B1/94]
 gi|260924324|gb|EEX90892.1| integrase/recombinase [Brucella ceti M13/05/1]
 gi|261294986|gb|EEX98482.1| integrase/recombinase [Brucella ceti M644/93/1]
 gi|261297307|gb|EEY00804.1| integrase/recombinase [Brucella pinnipedialis B2/94]
 gi|261301518|gb|EEY05015.1| integrase/recombinase [Brucella neotomae 5K33]
 gi|261738637|gb|EEY26633.1| phage integrase [Brucella sp. F5/99]
 gi|261742516|gb|EEY30442.1| integrase/recombinase [Brucella suis bv. 5 str. 513]
 gi|262553203|gb|EEZ09037.1| integrase/recombinase [Brucella ceti M490/95/1]
 gi|262766482|gb|EEZ12271.1| integrase/recombinase [Brucella melitensis bv. 3 str. Ether]
 gi|263002315|gb|EEZ14890.1| integrase/recombinase [Brucella melitensis bv. 1 str. Rev.1]
 gi|264661315|gb|EEZ31576.1| integrase/recombinase [Brucella pinnipedialis M292/94/1]
 gi|294821383|gb|EFG38382.1| phage integrase [Brucella sp. NVSL 07-0026]
          Length = 164

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 59/155 (38%), Gaps = 14/155 (9%)

Query: 205 RCSDSCRAGVQH-------LQN-----NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252
           R  D               L       + F ++  KTG  + + +     ++L  TP   
Sbjct: 9   RRGDIAALRWDQRCSKTVFLDGEAKSVDGFELRQGKTGKRLFLPITPILSEVLEATPRQG 68

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMAT 310
           ET  +    +  +    +         A + K  + HG+RK    I A+ GA+  ++M T
Sbjct: 69  ETVLVTAYGEPFSPKSLTGRMADWTASAKLPKGFTLHGLRKTLGKILAEGGASTRQIMDT 128

Query: 311 YGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345
            G   +  AE YT+ A++ RL      R+  +  +
Sbjct: 129 LGHDDIAHAELYTREAEQARLATDGMSRVVRLKRN 163


>gi|218131354|ref|ZP_03460158.1| hypothetical protein BACEGG_02969 [Bacteroides eggerthii DSM 20697]
 gi|217986286|gb|EEC52623.1| hypothetical protein BACEGG_02969 [Bacteroides eggerthii DSM 20697]
          Length = 294

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 47/263 (17%), Positives = 96/263 (36%), Gaps = 23/263 (8%)

Query: 85  GSLAVNSRISFESYFDQI----IRKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFL 137
            + +  +   +++   ++        GD     +    IR  +     R   P++  + L
Sbjct: 15  RNYSKGTVRYYQADILELQKFGEELLGDLTPSDVDAGLIREWITSLMDRGCAPNTVNRKL 74

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-----EGSQP 192
           +S+R  +K+ +R+  VA +P   +  PK+K        + D+ +           EG + 
Sbjct: 75  SSVRSYYKYLLRKGMVAADPLQKITGPKKKKPLPVFLREGDVNRLLDDVDFGEGFEGCRD 134

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLA----- 246
           RL  E    +G+R S+      + +  +   IK T K      +   +     +      
Sbjct: 135 RLIIEMFYATGMRLSELIGLDDKDIDFSASLIKVTGKRNKQRLLPFDEELRCSMQEYVNV 194

Query: 247 ---MTPIGKETFFINNDKQKMNATQFSIWFKA--KATKAGVNKSAHGVRKFSATISADAG 301
                P+  + FFI    +++N +  +   K           +S H +R   AT   + G
Sbjct: 195 RNQALPVRSDAFFIRKTGERLNRSIVAYIVKRNLSKVVTVKKRSPHVLRHTFATAMLNNG 254

Query: 302 ATAHELMATYGWKTVDQAETYTK 324
           A    +    G +++   E YT 
Sbjct: 255 ADLGSIKELLGHESLATTEVYTH 277


>gi|51594547|ref|YP_068738.1| site-specific tyrosine recombinase XerC [Yersinia
           pseudotuberculosis IP 32953]
 gi|186893547|ref|YP_001870659.1| site-specific tyrosine recombinase XerC [Yersinia
           pseudotuberculosis PB1/+]
 gi|51587829|emb|CAH19432.1| putative integrase/recombinase [Yersinia pseudotuberculosis IP
           32953]
 gi|186696573|gb|ACC87202.1| tyrosine recombinase XerC [Yersinia pseudotuberculosis PB1/+]
          Length = 303

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 44/259 (16%), Positives = 87/259 (33%), Gaps = 19/259 (7%)

Query: 85  GSLAVNSRISFES---YFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF---LT 138
             L+  +  S+        +I  + G   ++ +    +RS V   K T   A      L+
Sbjct: 23  RQLSPLTVTSYRRQLSALMEIGEQMGLAHWQTLDAAQVRSLVSRSKRTGLHASSLALRLS 82

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLA 195
           ++R    W V Q  +  NP   V  P+      +    +++ +  S         + R  
Sbjct: 83  ALRSFLNWLVSQGVLPANPAKGVSTPRSGRHLPKNIDVDEINKLLSIDLNDPLAVRDRAM 142

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI--------ITVELPDGFMKLLAM 247
            E +  +GLR S+      +H+      +     G+           V     ++ L  +
Sbjct: 143 LEVMYGAGLRLSELVGMNCKHVDLASGDVWVMGKGSKERKVPLGKTAVTWLQHWLALREL 202

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAH 305
                +  F+ N  ++++A      F     K GV  +   H +R   AT   ++     
Sbjct: 203 FEPQDDAIFLANTGKRISARNVQKRFAEWGVKQGVSSHIHPHKLRHSFATHMLESSGDLR 262

Query: 306 ELMATYGWKTVDQAETYTK 324
            +    G   +   + YT 
Sbjct: 263 AVQELLGHANLTTTQIYTH 281


>gi|257063755|ref|YP_003143427.1| site-specific recombinase XerD [Slackia heliotrinireducens DSM
           20476]
 gi|256791408|gb|ACV22078.1| site-specific recombinase XerD [Slackia heliotrinireducens DSM
           20476]
          Length = 313

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 44/284 (15%), Positives = 101/284 (35%), Gaps = 25/284 (8%)

Query: 75  ISEY-RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVESRKH 128
           + +Y  + A   + + ++  ++        R +       +       +     +   ++
Sbjct: 23  VDDYCLEMAQVKNASAHTVRNYRIDLLDFGRWAVRCHVDPMRITYRQVRRYLGELTQAQY 82

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-- 186
           +  +  + L++++ LF+W      +  +P   ++ PK      R     DM +  + +  
Sbjct: 83  SRKTINRRLSAIKGLFRWMNLTGVIDSDPVSVIQGPKSAKGLPRMIPASDMGRILTVYKD 142

Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFM 242
                  + +   EFL   G R S++    +  +  +   +K   K      + L D  +
Sbjct: 143 SDDPADMRNQAILEFLYACGARISEASGLMLADVDFDAKQVKVFGKGSKERIIPLHDMAV 202

Query: 243 KLL-----AMTPI-----GKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVR 290
           K +        P+       E FF++    +M        FK     AGV+   + H +R
Sbjct: 203 KTMKSYAWRARPVLLKGKPNEFFFVSTRGNRMGPDAMRKMFKNTLIMAGVDTSYTPHDMR 262

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGI 333
              AT   + GA    +    G +++   + YT    D ++  +
Sbjct: 263 HTFATDLVEGGADLKSVQEMLGHESLSTTQIYTHLSVDHLKQAV 306


>gi|283787512|ref|YP_003367377.1| tyrosine recombinase [Citrobacter rodentium ICC168]
 gi|282950966|emb|CBG90643.1| tyrosine recombinase [Citrobacter rodentium ICC168]
          Length = 298

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 39/259 (15%), Positives = 82/259 (31%), Gaps = 19/259 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRKHTPSSAIQFLT 138
             L+  +  +++   D II  + +              +        +   P+S    L+
Sbjct: 19  RQLSPITLKNYQRQLDAIIALAAEAGLESWQQCDAAMVRSFAVRSRRKGLGPASLALRLS 78

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLA 195
           ++R  F W V +  +  NP   V  PK      +    +D+ +            + R  
Sbjct: 79  ALRSFFDWIVSEGKLNANPAKGVSAPKAPRHLPKNIDVDDVNRLLDIDLNDPLAVRDRAM 138

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLAMT------ 248
            E +  +GLR S+     + HL  +        K      + +    +  +         
Sbjct: 139 LEVMYGAGLRLSELVGLDINHLDLDTGEVWVMGKGSKERRLPIGRNAVAWIEHWLDLRGL 198

Query: 249 -PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAH 305
               +   F++   ++++A      F     K G+N     H +R   AT   ++     
Sbjct: 199 FGCEENALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVHPHKLRHSFATHMLESSGDLR 258

Query: 306 ELMATYGWKTVDQAETYTK 324
            +    G   +   + YT 
Sbjct: 259 GVQELLGHANLSTTQIYTH 277


>gi|269795295|ref|YP_003314750.1| tyrosine recombinase XerD [Sanguibacter keddieii DSM 10542]
 gi|269097480|gb|ACZ21916.1| tyrosine recombinase XerD [Sanguibacter keddieii DSM 10542]
          Length = 317

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 46/272 (16%), Positives = 86/272 (31%), Gaps = 33/272 (12%)

Query: 85  GSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGV--------ESRKHTPSSAI 134
              + N+  ++    D+ +      D     +TT  +   V                SA 
Sbjct: 26  RGRSTNTVAAYRRDLDRYVAYLESLDLALEDVTTTVVEDYVTVVRTGSDGRSALAAGSAA 85

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS---- 190
           + L ++R    + V +     NP   V  P +     +  +  D+++  +    G     
Sbjct: 86  RSLAAVRGWHTFCVAEGLAPANPTAGVRPPSQGKRLPKAISTYDVERLLAAAGAGDTVAS 145

Query: 191 -QPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKT-QKTGTIITVEL--------- 237
            + R   E L  +G R S++    V  L     + S++   K      V +         
Sbjct: 146 VRNRALLELLYSTGARISEAVTLDVDDLDLTPGLESVRLFGKGSKERVVPVGSFAVEAIQ 205

Query: 238 --PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK----SAHGVRK 291
                   +L     G    F+N    +++        +  A  AG++     S H +R 
Sbjct: 206 AYLVRARPVLMAAGRGTPAVFLNTRGARLSRQSAWQVLRTSAETAGLDGAEHISPHTLRH 265

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYT 323
             AT     GA    +    G  +V   + YT
Sbjct: 266 SFATHLLSGGADVRVVQELLGHASVTTTQLYT 297


>gi|259415887|ref|ZP_05739807.1| phage integrase [Silicibacter sp. TrichCH4B]
 gi|259347326|gb|EEW59103.1| phage integrase [Silicibacter sp. TrichCH4B]
          Length = 317

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 45/301 (14%), Positives = 102/301 (33%), Gaps = 33/301 (10%)

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSG 122
           R     L+W+ +     A     A N+ +++      +          + ++    I + 
Sbjct: 2   RAPDDDLQWISTFLDAQAAELGAAHNTLLAYGRDLRNVTAWMAHKGTSFAQMRQSDIEAY 61

Query: 123 V---ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
           +   ++   + ++  + L++++ ++++A  + +   NP L ++ P R+    +   + ++
Sbjct: 62  LISCDAEGLSRATRARRLSAIKQIYRFAFEEGWRQDNPALQIKGPGREKSLPKTLDENEV 121

Query: 180 QQFKSFW-------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGT 231
            +            ++  +     E L  +G+R S+     V   + +    +   K G 
Sbjct: 122 DRLLGAARTVGRTEADRLRNTCLMELLYATGMRVSELVSLPVSAARGDPNMLLILGKGGK 181

Query: 232 IITVELPDGFMKLLAMT----------------PIGKETFFINNDKQKMNATQFSIWFKA 275
              V L       L+                     +  F   + +  +   +F +  K 
Sbjct: 182 ERMVPLSPPARMALSTWIEVRDAVEDKREGQGHKASRFLFPSRSKEGHLTRHRFYLLIKE 241

Query: 276 KATKAGV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
            A   GV     + H +R   AT     GA    + A  G   +   E YT   D  RL 
Sbjct: 242 LAVAGGVSPEKVTPHTLRHAFATHLLQNGADLRAIQALLGHADIATTEIYTHVLD-ARLA 300

Query: 333 I 333
            
Sbjct: 301 E 301


>gi|254362734|ref|ZP_04978818.1| site-specific recombinase XerC [Mannheimia haemolytica PHL213]
 gi|261491877|ref|ZP_05988456.1| site-specific recombinase XerC [Mannheimia haemolytica serotype A2
           str. BOVINE]
 gi|261494653|ref|ZP_05991133.1| site-specific recombinase XerC [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|153094359|gb|EDN75214.1| site-specific recombinase XerC [Mannheimia haemolytica PHL213]
 gi|261309618|gb|EEY10841.1| site-specific recombinase XerC [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261312532|gb|EEY13656.1| site-specific recombinase XerC [Mannheimia haemolytica serotype A2
           str. BOVINE]
          Length = 303

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 39/259 (15%), Positives = 92/259 (35%), Gaps = 19/259 (7%)

Query: 85  GSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLT 138
             ++ ++  +++     +     ++G  ++ ++ +  +R  +     +  +  S    L 
Sbjct: 22  KQVSPHTLSNYQRQLMAVSELFSQAGIENWEEVESSSVRWMLSQSHKQGLSAKSIGLRLV 81

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-SEGSQPR--LA 195
           ++R  F + ++   ++ NP L V+ PK      +    E + Q  +    E S  R    
Sbjct: 82  ALRQWFVYLIKIGRMSANPTLGVKSPKVGKHLPKNIDAEQVGQLLAIESDEPSDIRDIAM 141

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAMT------ 248
            E +  SGLR S+     +  +  +   ++   K      V +    +K L         
Sbjct: 142 MELMYSSGLRLSELQGLDLGDMDLSAREVRVQGKGSKERIVPIGSQALKALNRWLEMRLQ 201

Query: 249 -PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAH 305
                   F+N    +++     +  K    + G+  +   H +R   AT   +A     
Sbjct: 202 FKPQDNAVFLNKRGGRLSHRSIQLAMKKWGERQGLESHLHPHKLRHSFATHMLEASGDLR 261

Query: 306 ELMATYGWKTVDQAETYTK 324
            +    G  ++   + YT 
Sbjct: 262 AVQELLGHSSLSTTQIYTH 280


>gi|168702641|ref|ZP_02734918.1| integrase/recombinase [Gemmata obscuriglobus UQM 2246]
          Length = 321

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 47/279 (16%), Positives = 91/279 (32%), Gaps = 27/279 (9%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKH---IRSGVESRKHTP 130
           +Y +S     LA N+ +++     +    + +    DY   T KH     + +   +   
Sbjct: 15  DYIQSER--GLAENTLLAYGRDLARYAHWVEQVQLPDYTHPTLKHLAAYVAFLHEEQLAA 72

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
            S  + L ++++ +++   +E  +      +  P       +      ++   +    G 
Sbjct: 73  PSIARHLVALKMFYRFLQLEERASATTVNLLSSPNLWERVPQVLPPPAVETLITAPQPGD 132

Query: 191 Q----PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLL 245
           +     R   E L  +G R S+     +  +  +    K   K      V L    +  L
Sbjct: 133 RFHLRDRAMLEVLYATGCRASEVVNLKLNDVYLDSGFCKCVGKGSKQRVVPLNRHAVTAL 192

Query: 246 AM-----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292
                           G E  F +   + +         K    +AG+ K  S H +R  
Sbjct: 193 RAYLGGGVDEGGRPAAGPEVVFTSKTGRPLTRIHLWALVKKYCKRAGLPKTVSPHTLRHS 252

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            AT     GA    +    G  ++   + YT   DR RL
Sbjct: 253 FATHLLSGGADLRTVQELLGHASIATTQIYTH-VDRDRL 290


>gi|291301889|ref|YP_003513167.1| tyrosine recombinase XerD [Stackebrandtia nassauensis DSM 44728]
 gi|290571109|gb|ADD44074.1| tyrosine recombinase XerD [Stackebrandtia nassauensis DSM 44728]
          Length = 301

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 43/258 (16%), Positives = 86/258 (33%), Gaps = 23/258 (8%)

Query: 89  VNSRISFESYFDQIIRKSGDF-------DYRKITTKHIRSGVESRKHTPSSAIQFLTSMR 141
              R     Y D +     D        D      +  +   E    +  S  +  +++R
Sbjct: 25  AAYRRDLGRYLDWLSETGLDALSQVTAADIGGYLARLSQGDDEHPGLSARSIARATSALR 84

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-----SEGSQPRLAF 196
            L ++A+ +     +P  ++  PK      +    +++ +            G +     
Sbjct: 85  GLHRFALDEGVTDTDPTQALSTPKPALRLPKAIGVDEVARLLEAAAILDNPTGLRDTALV 144

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLLAM 247
           EFL  +G R S++  A +  L  +  +++ +  G  + V          L +   +    
Sbjct: 145 EFLYGTGARVSETIGADIDDLDFDAAAVRLRGKGGKVRVVPLGGYAVRALENYLTRARPS 204

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAG--VNKSAHGVRKFSATISADAGATAH 305
              G    F+N+  + +         +  A +AG  V+   H +R   AT   D GA   
Sbjct: 205 WTPGHPKLFVNSRGKPLTRQGVFFILRGLADRAGMAVDLGPHTLRHSFATHLLDGGADIR 264

Query: 306 ELMATYGWKTVDQAETYT 323
            +    G   V   + YT
Sbjct: 265 VVQELLGHAAVSTTQIYT 282


>gi|126729514|ref|ZP_01745327.1| tyrosine recombinase XerD [Sagittula stellata E-37]
 gi|126709633|gb|EBA08686.1| tyrosine recombinase XerD [Sagittula stellata E-37]
          Length = 311

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 42/268 (15%), Positives = 93/268 (34%), Gaps = 33/268 (12%)

Query: 90  NSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGV---ESRKHTPSSAIQFLTSMRVLF 144
           N+  +++     +     D   D+     K + S +   ++   + ++  + L++++ ++
Sbjct: 25  NTLAAYQRDLTHVADWLTDHALDFATAQKKDVESYLIDCDTLGLSRATRARRLSAIKQIY 84

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-----EGSQPRLA--FE 197
           ++A  +     NP + +  P R+    +  + E + +     +     E  + R A   +
Sbjct: 85  RFAFEEGLREDNPAVQIAGPGREKRLPKTLSVEQVDRLLDAAANHGRTEADRARNACLMQ 144

Query: 198 FLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET-- 254
            L  +G+R ++     V   + +    +   K G    V L     + L      ++   
Sbjct: 145 VLYATGMRVTELVSLPVSAARGDPRMLLIRGKGGKERMVPLSPPAREALTAWLSARDAAA 204

Query: 255 -------------FFINNDKQ--KMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATI 296
                        F   +  +   +    F +  K  A +AGV     + H +R   AT 
Sbjct: 205 SEAQAATGAVPSPFLFPSHGKAGHLTRHAFYMLIKEFALEAGVPPSEVTPHTLRHAFATH 264

Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324
               GA    +    G   V   E YT 
Sbjct: 265 LLANGADLRAIQTLLGHADVATTEIYTH 292


>gi|189184134|ref|YP_001937919.1| putative integrase [Orientia tsutsugamushi str. Ikeda]
 gi|189184809|ref|YP_001938594.1| putative integrase [Orientia tsutsugamushi str. Ikeda]
 gi|189180905|dbj|BAG40685.1| putative integrase [Orientia tsutsugamushi str. Ikeda]
 gi|189181580|dbj|BAG41360.1| putative integrase [Orientia tsutsugamushi str. Ikeda]
          Length = 379

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 52/282 (18%), Positives = 103/282 (36%), Gaps = 13/282 (4%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD 110
           L G   K       +   +TLK +   Y        L  +S+I ++   ++ ++      
Sbjct: 78  LKGQIAKGIDPLKTKNA-STLKEVYDLYINH---RKLKDSSKILYKGIMNKYLKNLHYIH 133

Query: 111 YRKITTKHIRSGVE-SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
              I  + I      ++K    SA + L  ++ +   AV  E +  NP   ++  K +  
Sbjct: 134 VSNIRKEDIYKIFNNAKKGGKYSANKTLKLIKAILNIAVELELIEKNPANGIKIHKMQAR 193

Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLAFE--FLLYSGLRCSDSCRAGVQHLQ--NNIFSIK 225
             R  T E+M +F +   E   P L +     LY+  R ++      ++++    ++ I 
Sbjct: 194 -DRYITLEEMPRFLAAVEEDKNPYLKYFVYISLYTAARRNNVLSMRWENIRLEEGVWYIP 252

Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGV- 282
             K G   TV L +  ++ L       E+   F    +   + T  ++ +K    +AG+ 
Sbjct: 253 ETKNGESQTVPLINLLIEKLKQYSYSSESEWVFPGQRRNSGHLTSINVAWKRVCKRAGLK 312

Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           N   H +R+   +  A  G     +            + Y  
Sbjct: 313 NLRIHDLRRTVGSWMAKFGMPIAVISKLLNHNDHQSTKFYIH 354


>gi|158522508|ref|YP_001530378.1| integrase family protein [Desulfococcus oleovorans Hxd3]
 gi|158511334|gb|ABW68301.1| integrase family protein [Desulfococcus oleovorans Hxd3]
          Length = 308

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 46/279 (16%), Positives = 103/279 (36%), Gaps = 28/279 (10%)

Query: 74  LISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRK----------ITTKHIRSG 122
           L   + +S A     + N+  ++ +   + +      D  +          I  +   + 
Sbjct: 13  LADAFVESLASEKGYSPNTCRAYSADLKEFLAFLSPPDDTEHPVCLDDISVIAIRGYLAF 72

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           +  +K   S+  + L+ +R  F++  ++  +  NP  +V  PK   +     + +DM + 
Sbjct: 73  LHKKKMDKSTVSRKLSVLRSFFRYLEKRGIMTGNPARAVLSPKIGRKIPAFLSVDDMFRL 132

Query: 183 KSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVEL 237
               +  +    + R  FE +  +G+R S++      H++ +    +   K      V +
Sbjct: 133 LDASTGDTLLDLRNRAIFETIYSTGIRVSEAAGLDAAHVETDERVFRVYGKGAKERVVPV 192

Query: 238 PDGFMKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KS 285
               +  +A             + +   F+N ++ ++         K  A + G+    S
Sbjct: 193 GKKALASIAAYRTRLFEETGIGVEEGPLFLNKNRGRLTTRSMDRILKQTALRCGLTVSLS 252

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            H +R   AT   DAGA    +    G K++   + YT 
Sbjct: 253 PHALRHSFATHMLDAGADLRTVQEILGHKSLSTTQKYTH 291


>gi|284991421|ref|YP_003409975.1| tyrosine recombinase XerD [Geodermatophilus obscurus DSM 43160]
 gi|284064666|gb|ADB75604.1| tyrosine recombinase XerD [Geodermatophilus obscurus DSM 43160]
          Length = 315

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 47/280 (16%), Positives = 90/280 (32%), Gaps = 34/280 (12%)

Query: 85  GSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGVESRKH--------TPSSA 133
             LA N+  S+     +    +  +G     ++    +   + + +         + +SA
Sbjct: 24  RGLAANTISSYRRDLRRYTEFLDAAGVRGLGEVAESDVAGFLAALRQGDDDHPPLSATSA 83

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-----SE 188
            + + ++R L ++A+    V  +    V  P       +    E +              
Sbjct: 84  ARAVVAVRGLHRFALLDGLVPDDVAHEVRPPSPARRLPKAIPVESVVALIEAAGALEGPR 143

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVEL--------PD 239
           G + R   E L  +G R S++    V  L      ++   K G    V +         D
Sbjct: 144 GLRDRALLELLYGTGARISEAVGLAVDDLDRGQSVVRLAGKGGKQRIVPVGSYALRAVED 203

Query: 240 GFMKLLAMTPIGKET------FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRK 291
             ++                  F+N     ++        +  A +AG+    S H +R 
Sbjct: 204 YLVRARPALAAAGRGGVRGGALFLNARGGSLSRQSAWAILRTAAERAGLTAEVSPHTLRH 263

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYT-KGADRIR 330
             AT   D GA    +    G  +V   + YT    DR+R
Sbjct: 264 SFATHLLDGGADVRVVQELLGHASVTTTQVYTLVTVDRLR 303


>gi|297570024|ref|YP_003691368.1| tyrosine recombinase XerD [Desulfurivibrio alkaliphilus AHT2]
 gi|296925939|gb|ADH86749.1| tyrosine recombinase XerD [Desulfurivibrio alkaliphilus AHT2]
          Length = 356

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 38/249 (15%), Positives = 90/249 (36%), Gaps = 21/249 (8%)

Query: 109 FDYRKITTKHIRSGVES---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165
            +  +I  +H+R+ + +    K  P S  + ++++R  F++   ++ +  +P   ++ PK
Sbjct: 104 TEINQIGPEHLRAYLAACRQEKAAPRSTSRRISALRAFFRFLQGEQLLGHDPAALLDLPK 163

Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220
                 +  +  +++Q  +  +  +     +       L  +G+R S+  +  V  +   
Sbjct: 164 IGRALPKVLSSAEVEQLLAPPAPPASILALRNHAMLHLLYATGMRVSELVKLPVAAVNQA 223

Query: 221 IFSIKTQKTGTIITVELPDGFMKLLAM----------TPIGKETFFINNDKQKMNATQFS 270
                  K      V   +   + +A+               +  F+      M   +F 
Sbjct: 224 GHLRILGKGSKERLVPFGEAARQAMAVYITQARPRLLKKRRSDFLFVTGRGTAMTRLRFW 283

Query: 271 IWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
              +  A + G+ +  S H +R   AT   + GA    +    G   +   + YT   D 
Sbjct: 284 QIVRKSARERGIAREISPHVLRHSFATHLLEHGADLRAVQVMLGHADIATTQIYTH-VDT 342

Query: 329 IRLGIKNSR 337
            RL   + +
Sbjct: 343 NRLKAIHRK 351


>gi|163848038|ref|YP_001636082.1| integrase family protein [Chloroflexus aurantiacus J-10-fl]
 gi|222525926|ref|YP_002570397.1| integrase family protein [Chloroflexus sp. Y-400-fl]
 gi|163669327|gb|ABY35693.1| integrase family protein [Chloroflexus aurantiacus J-10-fl]
 gi|222449805|gb|ACM54071.1| integrase family protein [Chloroflexus sp. Y-400-fl]
          Length = 286

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 43/271 (15%), Positives = 101/271 (37%), Gaps = 25/271 (9%)

Query: 82  AHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHTPSSAI---Q 135
           A    ++ N+ I++ +  DQ+       G   +  + ++ + + V + K    +     +
Sbjct: 13  ADERKMSANTTIAYRTDLDQLCAFLHERGIEHWSDVDSETMMAFVINLKEKRYANSTMAR 72

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-----WSEGS 190
            L +++  F +   +  +  +P   ++ P+      R  ++  + +           EG 
Sbjct: 73  RLAAIKSFFSFLKERNVIHHDPTDQLDAPRVDRFPPRAISQHQVDELLEVPLQNGTPEGI 132

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLL---- 245
           + +   E L  +G+R S+     V  +  +  +++ +   G   T+ L D  +  L    
Sbjct: 133 RDKAMLEVLYATGMRVSELVALNVDDVAFDHRTVRCRGRQGRERTIPLSDPALTALEEYL 192

Query: 246 --------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATI 296
                      P   E  F+N+  +++    F +  K  A + G+ + + H +R   A  
Sbjct: 193 DIARPQLARQAPDDPEALFLNHRGKRLTRQGFWLILKTYAEQVGMHDLTPHMLRHSFAAH 252

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGAD 327
               G    EL    G  ++   + Y   A+
Sbjct: 253 QLRNGVDLRELQERLGHASIATTQMYAHLAE 283


>gi|284006600|emb|CBA71861.1| phage integrase [Arsenophonus nasoniae]
          Length = 297

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 49/271 (18%), Positives = 98/271 (36%), Gaps = 21/271 (7%)

Query: 75  ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDY---RKITTKHIRSGVESRKHTP 130
           I ++ +       L+  + I+++     ++  + D D     ++ T H+R  V   +   
Sbjct: 5   IDDFLRYLRVERQLSPVTLINYQRQLAVLVDMAIDMDINDWAQLETSHVRMMVAKCRRQG 64

Query: 131 SSAIQF---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186
             A      L+S+R    W V Q  +  NP  ++  PK K    +    +++ Q  +   
Sbjct: 65  LQAASLALRLSSLRSFLDWLVGQGLITANPAKTIRAPKNKRHLPKNIDVDEVNQLLNIDL 124

Query: 187 --SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT--------IITVE 236
                 + R   E +  +GLR S+      QHL      ++    G+         I VE
Sbjct: 125 ADPLSVRDRTMLEVMYGAGLRLSELINLNCQHLDLQSGEVRVMGKGSKERKVPLGRIAVE 184

Query: 237 LPDGFMKLLAMTPIGKETFFIN-NDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293
               ++++        E  FI+    ++++A      F     + GV  +   H +R   
Sbjct: 185 WLIRWLEMRQQYAKQDEAVFISIQRGKRISARNVQKRFALWGIRQGVRSHIHPHKLRHSF 244

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324
           AT   ++      +    G   +   + YT 
Sbjct: 245 ATHILESSGDLRAVQELLGHANLSTTQVYTH 275


>gi|182416388|ref|YP_001821454.1| tyrosine recombinase XerD [Opitutus terrae PB90-1]
 gi|177843602|gb|ACB77854.1| tyrosine recombinase XerD [Opitutus terrae PB90-1]
          Length = 317

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 59/300 (19%), Positives = 106/300 (35%), Gaps = 24/300 (8%)

Query: 56  PKREYINSPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDY 111
             R       + P      I  +         LA N+  S+    DQ        G  D+
Sbjct: 3   APRARAQDTSQAPPAFADDIEAFLGYIALERGLAANTVASYRRDLDQAATHLAAQGARDW 62

Query: 112 RKITTKHIRSGVESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168
           R +T +     + S      T +S  + L+++R L  + VR+ + A +    +  PK   
Sbjct: 63  RAVTGEQAAGWIHSLSSASYTVASLARKLSALRSLAHFLVRERFRADDFTALLSGPKASR 122

Query: 169 EGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
                 T+E++ +  +  + G     + R   E    SGLR S+     +Q +      +
Sbjct: 123 RIPGTLTEEEIARLLAAPTGGDARALRDRALLELFYSSGLRVSELAGLLLQQVDLEHGFL 182

Query: 225 KT-QKTGTIITVELPDGFMKLLAM-TPIGKETF---------FINNDKQKMNATQFSIWF 273
           +   K      V +    ++ LA     G+  F         F+N +   ++     +  
Sbjct: 183 RVFGKGAKERVVPIGGKAIEALATYLTAGRPHFVRSRTGSQLFLNKNGGPLSRVMLWMLV 242

Query: 274 KAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           K  A +AG+ K    HG+R   AT     GA    +    G  ++   + YT    +  L
Sbjct: 243 KKYAKRAGLTKNVKPHGLRHSFATHLLSGGADLRAIQEMLGHASISTTQIYTSVESQRLL 302


>gi|114570821|ref|YP_757501.1| phage integrase family protein [Maricaulis maris MCS10]
 gi|114341283|gb|ABI66563.1| phage integrase family protein [Maricaulis maris MCS10]
          Length = 321

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 46/304 (15%), Positives = 104/304 (34%), Gaps = 31/304 (10%)

Query: 74  LISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRK---ITTKHIRSGVESRKHT 129
           LI  +    A     + N+  ++      +  +    +         +H+ + + +    
Sbjct: 15  LIELFLDMMAAERGASPNTLDAYRRDLVDVAARLSSRNLEAATTPDLEHVLASMAADGLA 74

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW--- 186
            S+A + L++++  +++ +       NP   +  PK+     +  T++D+ +        
Sbjct: 75  ASTAARRLSAIKRFYRFLLSDGVREDNPATPLRAPKQGRPLPKILTEDDVDRLFDAASGL 134

Query: 187 --SEGSQPRLAFEFLLYSGLRCSDSCRAGVQH-LQNNIFSIKTQKTGTIITVELPDGFMK 243
               G + R   E L   GLR ++     +   ++       T K G    V L +  ++
Sbjct: 135 SGPAGLRTRALMELLYAGGLRVTELVSLPLGAFVRAERCIQITGKGGRERLVPLTEAALE 194

Query: 244 LLAMTPIGKETFFI-----------------NNDKQKMNATQFSIWFKAKATKAGVN--- 283
            +A   + +E                           +   +F+         AG++   
Sbjct: 195 AVAAYKVVREAHLPVDRTKSGKAARYLFPSRTAKTGHLTRERFAQILSELTLAAGLDPAK 254

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD-RIRLGIKNSRRISSV 342
            S H +R   AT     GA    +    G   V   + YT   D R++  ++++  ++  
Sbjct: 255 VSPHVLRHAFATHLLARGADLRSVQILLGHADVSTTQIYTHVLDERLKSLVQSAHPLARR 314

Query: 343 VDSD 346
            D D
Sbjct: 315 TDDD 318


>gi|271502380|ref|YP_003335406.1| tyrosine recombinase XerC [Dickeya dadantii Ech586]
 gi|270345935|gb|ACZ78700.1| tyrosine recombinase XerC [Dickeya dadantii Ech586]
          Length = 302

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 44/259 (16%), Positives = 87/259 (33%), Gaps = 19/259 (7%)

Query: 85  GSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFLT 138
             L+  ++ S+      II     SG  D+  +    +R+ V   K      +S  Q L+
Sbjct: 22  RQLSPLTQRSYAHQLQVIIEMLSASGVTDWSSLDAAGVRAVVARSKRDGLNAASLAQRLS 81

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLA 195
           ++R    W V +  +  NP   V  PK      +    ++M +            + R  
Sbjct: 82  ALRSFLDWLVGRGELKANPARGVPAPKAGRHLPKNMDVDEMDRLLDIDLNDPLAVRDRAM 141

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI--------ITVELPDGFMKLLAM 247
            E +  +GLR ++       H+      I     G+           V     ++ +  +
Sbjct: 142 LEVMYGAGLRLAELVGLDCGHVNLESGEIWVMGKGSKERKLPVGATAVTWLTHWLAIRDI 201

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAH 305
                +  F+++  ++++       F     K GVN     H +R   AT   ++     
Sbjct: 202 YAPEDDAVFVSSLGRRISMRNVQKRFAEWGVKQGVNSHVHPHKLRHSFATHMLESSGDLR 261

Query: 306 ELMATYGWKTVDQAETYTK 324
            +    G   +   + YT 
Sbjct: 262 AVQELLGHANLSTTQIYTH 280


>gi|254708144|ref|ZP_05169972.1| phage integrase [Brucella pinnipedialis M163/99/10]
 gi|261315648|ref|ZP_05954845.1| integrase/recombinase [Brucella pinnipedialis M163/99/10]
 gi|261304674|gb|EEY08171.1| integrase/recombinase [Brucella pinnipedialis M163/99/10]
          Length = 164

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 59/155 (38%), Gaps = 14/155 (9%)

Query: 205 RCSDSCRAGVQH-------LQN-----NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252
           R  D               L       + F ++  KTG  + + +     ++L  TP   
Sbjct: 9   RRGDIAALRWDQRCSKTVLLDGEAKSVDGFELRQGKTGKRLFLPITPILSEVLEATPRQG 68

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMAT 310
           ET  +    +  +    +         A + K  + HG+RK    I A+ GA+  ++M T
Sbjct: 69  ETVLVTAYGEPFSPKSLTGRMADWTASAKLPKGFTLHGLRKTLGKILAEGGASTRQIMDT 128

Query: 311 YGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345
            G   +  AE YT+ A++ RL      R+  +  +
Sbjct: 129 LGHDDIAHAELYTREAEQARLATDGMSRVVRLKRN 163


>gi|47570332|ref|ZP_00240977.1| site-specific recombinase, phage integrase family [Bacillus cereus
           G9241]
 gi|47552997|gb|EAL11403.1| site-specific recombinase, phage integrase family [Bacillus cereus
           G9241]
          Length = 302

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 44/272 (16%), Positives = 96/272 (35%), Gaps = 26/272 (9%)

Query: 85  GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLT 138
            + +  +  S+++  +  +    + G   +  IT   +R  +      K    S  + ++
Sbjct: 21  RNYSKYTIASYQNDLEHFVQFMEREGISSFLDITYADVRLYLTTLHDEKLARKSVARKVS 80

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194
           S+R L+++ +R+ Y   NP      PK++    +    E++++           G + + 
Sbjct: 81  SLRSLYRFLMREGYRKDNPFALASLPKKELSIPKFLYAEELEELFEVSDTETPLGQRNQA 140

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE------------LPDGF 241
             E +  +G+R S+     +  +   + +I    K      +             + +G 
Sbjct: 141 LLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQRYIPFGSYAQDALITYIENGR 200

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
            +L   T       F+N     + +            KA +    S H +R   AT   D
Sbjct: 201 KQLAEKTEEHSHMVFLNAKGTPLTSRGVRYVLNELIKKASLTMRISPHMLRHTFATHMLD 260

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            GA    +    G + +   + YT    + RL
Sbjct: 261 EGADLRTVQELLGHENLSTTQIYTH-VSKERL 291


>gi|325661290|ref|ZP_08149916.1| hypothetical protein HMPREF0490_00649 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472239|gb|EGC75451.1| hypothetical protein HMPREF0490_00649 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 302

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 46/295 (15%), Positives = 103/295 (34%), Gaps = 30/295 (10%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFE----SYFDQIIRKSGDFDYRKIT---TKHIRSGV 123
           L+ ++ E+        L+  +   +      +F  I ++    D  KI         + +
Sbjct: 3   LEDVLEEFIFDCKLRRLSEKTIKGYRNNNLRFFTFIKKEYDIDDLGKIQGNVINAYIAYL 62

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
            S    PS     + S R  +K+   ++YV+ NP   V   K+    I+ +  ++++   
Sbjct: 63  TSIGRKPSYINGIIKSFRAFYKYCENEKYVSRNPMNKVNFQKQGKTLIKTFNDKEVRDMV 122

Query: 184 SFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239
            ++        + +L    LL +G+R S+ C   +  ++ +   I+ +     + V +  
Sbjct: 123 RYYGSVRYLDIRDKLIMVMLLDTGIRNSELCGLLISDIRYDHILIRGKGNKERV-VPISP 181

Query: 240 GFMKLLAMTPIGK------------ETFFINNDKQKMNATQFSIWFKAKATKA-----GV 282
              K+L      +            E  F++   +K+           +  +A      +
Sbjct: 182 ILNKILIKYKRVRNLYIKDKFAYQIEYLFLSQKGKKLTPETV-ERVVLECAEACKVRKTI 240

Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
             S H  R + A      G   + L    G   ++  + Y +  D  R+     +
Sbjct: 241 RCSPHTCRHYFAQAQLKNGCDLYTLSRLLGHSNINITKIYLQSMDDERVLDMGVK 295


>gi|293604631|ref|ZP_06687033.1| phage integrase family site-specific recombinase [Achromobacter
           piechaudii ATCC 43553]
 gi|292816962|gb|EFF76041.1| phage integrase family site-specific recombinase [Achromobacter
           piechaudii ATCC 43553]
          Length = 322

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 65/344 (18%), Positives = 119/344 (34%), Gaps = 35/344 (10%)

Query: 2   TPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYI 61
           T    LP  V ++   HG   +Y + G  R+I        + +  Y   +   T     +
Sbjct: 5   TKDRHLPACVYEK---HG-AFWYVKGGKWRKI---GSDLHSALTEYARIVAAPTDGMPAL 57

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121
                   T                +A ++R  +E     +     DF   ++    +  
Sbjct: 58  IDEALPVLT--------------KHVAASTRKQYEYCASMLKEDFADFYPGQVKHGDVVE 103

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
            ++      + A + LT ++++F+WA+ +  V  NPC+SV+R   +T   R  T+++  +
Sbjct: 104 MLDQYADRQALANRMLTVLKLVFQWALDRGRVEANPCVSVKRF-VQTSRDRLVTRDEYTR 162

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241
                    Q     +    +G R  D  +  + HL ++    + QKTG  + VE     
Sbjct: 163 VYEACPPWLQ--CVMDLCYLTGQRIGDVLKIELVHLHDDGIYFEQQKTGKRLVVEWTPEL 220

Query: 242 MKL------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSA 294
             +      L    + K          +   +     FK  A  A V + + H +R  S 
Sbjct: 221 RAVSELAKSLHGEAVQKRFLIGARGGNQRLYSYVWRAFKNAAKAAKVTDVNLHDLRAMSG 280

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338
           T +   G       A  G         Y +   R +L    SR+
Sbjct: 281 TAAEAQGIDP---TALLGHSDTRTTRIYLRD-KRPKLVKGPSRK 320


>gi|149184272|ref|ZP_01862590.1| integrase [Erythrobacter sp. SD-21]
 gi|148831592|gb|EDL50025.1| integrase [Erythrobacter sp. SD-21]
          Length = 292

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 48/274 (17%), Positives = 94/274 (34%), Gaps = 19/274 (6%)

Query: 75  ISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           I ++    A     A N+ +++    +Q     G+        +  + G       P++ 
Sbjct: 4   IDDFLAMLAAERGAARNTLLAYGRDLNQAEELLGEKLAGATPAQLAKLGQGWSSLAPATL 63

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW------- 186
            + ++++R  F + V +     +P  ++ RP  +    +  +   ++             
Sbjct: 64  ARKISALRQFFGFLVDEGEREDDPTYALPRPATRRPLPKILSHAQVEALFGRAEDEAASD 123

Query: 187 -SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-QNNIFSIKTQKTGTIITVELP----DG 240
             +  +     E L  SGLR S+     +  + ++  F   T K G    V +       
Sbjct: 124 RPQAVRLLAMLELLYGSGLRASELVSLPLSAVPRDEPFLTVTGKGGQARLVPVSTRAKQA 183

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATIS 297
             + LA+ P G    F +     +   +     K  A +A +     S H +R   AT  
Sbjct: 184 LSRWLALRPTGSNYLFPSRSG-HLTRIRLYQMLKELAVRADLPPEKLSPHVLRHAFATHL 242

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            + GA    L    G   +   + YT   D  RL
Sbjct: 243 LEGGADLRALQTLLGHADIATTQIYTH-VDAARL 275


>gi|294669707|ref|ZP_06734774.1| hypothetical protein NEIELOOT_01608 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291308620|gb|EFE49863.1| hypothetical protein NEIELOOT_01608 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 290

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 42/262 (16%), Positives = 94/262 (35%), Gaps = 18/262 (6%)

Query: 86  SLAVNSRISFESYFDQI-IRKSGD-FDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL 143
            L+ N+  ++    ++I +R +G   D+       + + V        S  + L++ +  
Sbjct: 17  RLSANTLAAYRRDLNKIAVRLAGQGEDWLSADGSGLAAVVYHPDEKTRSQARALSACKRF 76

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLAFEFL 199
           + W +  E ++ +P   +  PK++       ++  ++   +        G + +   E +
Sbjct: 77  YGWLLETEQLSNDPTEYLTAPKQERILPAIVSESQIEMLLAAPDTDSPHGLRDKALLELM 136

Query: 200 LYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFIN 258
             SGLR S++ +  +  +       +   K G    V + +     +           + 
Sbjct: 137 YASGLRVSEAVKLTLGEIDLQRGLVVTVGKGGKQRLVPMGEEASYWIERYLAQARPVLLK 196

Query: 259 ND-------KQKMNATQFSIWFK---AKATKAGV-NKSAHGVRKFSATISADAGATAHEL 307
           N         QK N     + +      A  AG+ + S H +R   AT   + GA    +
Sbjct: 197 NARCDELFVGQKRNGISRQLAWMIVDKYAEAAGIRHLSPHSLRHAFATHLVNHGADLRVV 256

Query: 308 MATYGWKTVDQAETYTKGADRI 329
            +  G   +   + YT  A+  
Sbjct: 257 QSLLGHADISTTQIYTHVANER 278


>gi|317124968|ref|YP_004099080.1| tyrosine recombinase XerD subunit [Intrasporangium calvum DSM
           43043]
 gi|315589056|gb|ADU48353.1| tyrosine recombinase XerD subunit [Intrasporangium calvum DSM
           43043]
          Length = 311

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 46/268 (17%), Positives = 88/268 (32%), Gaps = 29/268 (10%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE------SRKHTPSSAIQFLT 138
              + N+  S+E    +           +      R   +       R    SSA + L 
Sbjct: 25  KGASDNTLKSYERDLRKYREHLHHRGIERAAAVSERDVTDFLASLRERGLAASSAARTLV 84

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS-----QPR 193
           ++R   ++   +  VA +P  +V  P   +   +    E +++  +  S G      + R
Sbjct: 85  AVRGFHRFLALEGEVAGDPAGNVAPPTPPSRLPKAIPIEAVERLLAASSVGDTPESLRDR 144

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNI-----FSIKTQKTGTIITVELPDGFMKLLAMT 248
              E L   G R S++    V  L   +           K      V +    ++ +   
Sbjct: 145 ALLEVLYGVGARISEAIDLDVDDLDTGVAGEVGLVRLLGKGSKERIVPVGRFAVEAVDAY 204

Query: 249 PI-----------GKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSAT 295
            +           G    F+N   ++++        +  A +AG+  + S H +R   AT
Sbjct: 205 LVRGRPALAQRGQGGPALFLNQRGRRLSRQSAWSVVQRAAERAGLTEHVSPHTLRHSFAT 264

Query: 296 ISADAGATAHELMATYGWKTVDQAETYT 323
              D GA    +    G  +V   + YT
Sbjct: 265 HLLDGGADVRVVQELLGHASVTTTQIYT 292


>gi|42782923|ref|NP_980170.1| site-specific tyrosine recombinase XerC [Bacillus cereus ATCC
           10987]
 gi|42738850|gb|AAS42778.1| site-specific recombinase, phage integrase family [Bacillus cereus
           ATCC 10987]
          Length = 299

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 44/272 (16%), Positives = 96/272 (35%), Gaps = 26/272 (9%)

Query: 85  GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLT 138
            + +  +  S+++  +  +    + G   +  IT   +R  +      K    S  + ++
Sbjct: 18  RNYSKYTIASYQNDLEHFVQFMEREGISSFLDITYADVRLYLTTLHDEKLARKSVARKVS 77

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194
           S+R L+++ +R+ Y   NP      PK++    +    E++++           G + + 
Sbjct: 78  SLRSLYRFLMREGYRKDNPFALASLPKKELSIPKFLYAEELEELFKVSDTGTPLGQRNQA 137

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE------------LPDGF 241
             E +  +G+R S+     +  +   + +I    K      +             + +G 
Sbjct: 138 LLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQRYIPFGSYAQDALITYIENGR 197

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
            +L   T       F+N     + +            KA +    S H +R   AT   D
Sbjct: 198 KQLAKKTEEQSHMVFLNAKGTPLTSRGVRYVLNELIKKASLTMRISPHMLRHTFATHMLD 257

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            GA    +    G + +   + YT    + RL
Sbjct: 258 EGADLRTVQELLGHENLSTTQIYTH-VSKERL 288


>gi|229086384|ref|ZP_04218560.1| Tyrosine recombinase xerC [Bacillus cereus Rock3-44]
 gi|228696900|gb|EEL49709.1| Tyrosine recombinase xerC [Bacillus cereus Rock3-44]
          Length = 302

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 42/272 (15%), Positives = 95/272 (34%), Gaps = 26/272 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGD------FDYRKITTKHIRSGVESRKHTPSSAIQFLT 138
            + +  +  S+++  +  ++           D   +  +   + +   K    S  + ++
Sbjct: 21  RNYSKYTIASYQNDLEHFVQFMEREGISSFLDVTYVDVRLYLTTLHDEKLARKSVARKVS 80

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194
           S+R L+++ +R+ Y   NP      PK++    +    E++++           G + + 
Sbjct: 81  SLRSLYRFLMREGYREDNPFALASLPKKEWSIPKFLYVEELEKLFEVSDVKTPLGQRNQA 140

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVE------------LPDGF 241
             E +  +G+R S+        +  ++ +I  T K      +             + +G 
Sbjct: 141 LLELMYATGIRVSECVSLQFTDIDFSVGTILVTGKGKKQRYIPFGSYAQDALTTYIENGR 200

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISAD 299
            +L   T    +  F+N     +              KA +    S H +R   AT   D
Sbjct: 201 KQLAKKTEEHSQMVFLNAKGAPLTDRGVRYILNDLIKKASLTMKISPHMLRHTFATHMLD 260

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            GA    +    G + +   + YT    + RL
Sbjct: 261 EGADLRTVQELLGHENLSTTQIYTH-VSKERL 291


>gi|311281510|ref|YP_003943741.1| tyrosine recombinase XerC [Enterobacter cloacae SCF1]
 gi|308750705|gb|ADO50457.1| tyrosine recombinase XerC [Enterobacter cloacae SCF1]
          Length = 300

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 42/274 (15%), Positives = 92/274 (33%), Gaps = 20/274 (7%)

Query: 71  LKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV------ 123
           L   +  + +       L+  + +++    D I+  +G+                     
Sbjct: 6   LSAAVERFLRYLGVERQLSPITLLNYRRQLDAIMTLAGESGVASWQQCDAAVIRSWAVRS 65

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
             +   P+S    L+++R  F W V Q  ++ NP  +V  PK      +    +D+ +  
Sbjct: 66  RRKGLGPASLALRLSALRSFFDWLVSQGELSANPAKAVSAPKAPRHLPKNIDVDDVNRLL 125

Query: 184 SFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT--------I 232
                     + R   E +  +GLR S+     ++HL      +     G+         
Sbjct: 126 DIDLNDPLAVRDRAMLEVMYGAGLRLSELVNLDLRHLSLESGEVWVMGKGSKERRLPIGR 185

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVR 290
             V+  + ++ L  +     +  F++   ++++       F     K G+N     H +R
Sbjct: 186 SAVQWVEHWLDLRGLFGAEDDALFLSKLGKRISTRNVQKRFAEWGIKQGLNSHVNPHKLR 245

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              AT   ++      +    G   +   + YT 
Sbjct: 246 HSFATHMLESSGDLRGVQELLGHANLSTTQIYTH 279


>gi|260892612|ref|YP_003238709.1| integrase family protein [Ammonifex degensii KC4]
 gi|260864753|gb|ACX51859.1| integrase family protein [Ammonifex degensii KC4]
          Length = 285

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 47/268 (17%), Positives = 101/268 (37%), Gaps = 15/268 (5%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT---KHIRSGVESRK 127
           L+ ++  +R+S     L+  +   +  +  +     G  D  ++T       R  ++ + 
Sbjct: 3   LEEVLKAFRQSCLSRGLSPGTAEVYLGHVRRFFGWLGCADITEVTPFDVASYRRHLQEKG 62

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF-KSFW 186
             P++    L ++   F WA     V+ +P   V +        R   K ++ +F ++  
Sbjct: 63  RKPATVNNALNALSSFFSWAKEAGLVSSDPTEGVRQVPEDRPAPRWLGKRELGRFLRAVQ 122

Query: 187 SEGS-QPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELP--- 238
             GS + R     LL++GLR S++    ++ +    ++    ++  K G    V L    
Sbjct: 123 KHGSPRDRALVALLLHAGLRVSEAVSLRLEDVVIRERSGFVRVR-GKGGKYREVPLNVTV 181

Query: 239 -DGFMKLLAMTPIGKETF-FINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATI 296
                + LA  P  +  + F     + +        F   +  +GV  + H +R      
Sbjct: 182 RRVLKEYLAELPPQEGGWLFPGKGGEYLTRFAVEKLFARLSRLSGVEVTPHRLRHTFCKW 241

Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324
             DAG +  ++    G   ++    YT+
Sbjct: 242 LIDAGESLDKVALLAGHSNLNTTARYTR 269


>gi|332139609|ref|YP_004425347.1| tyrosine recombinase [Alteromonas macleodii str. 'Deep ecotype']
 gi|327549631|gb|AEA96349.1| tyrosine recombinase [Alteromonas macleodii str. 'Deep ecotype']
          Length = 306

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 45/262 (17%), Positives = 100/262 (38%), Gaps = 23/262 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK---HTPSSAIQFLTSMR 141
             L++++  +++    ++ +  G +++  +T   I+  +   K   H+P S    L+++R
Sbjct: 26  RGLSLHTIKNYKRQLTEVAKLLGLYEWSGLTPSDIKRVMADAKMSGHSPRSIALRLSALR 85

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS------EGSQPR-- 193
              ++ +  + +  NP   ++ PK+     +  + ++MQQ  +         EG Q R  
Sbjct: 86  TFCQYLIEHQQLFSNPVEGIQAPKQGKPLPKQLSVDEMQQLLNASPQSSDEDEGMQLRDV 145

Query: 194 LAFEFLLYSGLRCSDSCRAGVQH-LQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252
             FE L   GLR S+     +   L++    +   K      + L     K L      +
Sbjct: 146 AMFELLYGCGLRLSELTGLNLADCLKDGTVKVM-GKGSKQRILPLGRHAQKALNAWLKVR 204

Query: 253 ETF--------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGA 302
             +        F++  K +++  Q +      A +  +    S H +R   AT   ++  
Sbjct: 205 PAYASPYESAVFVSKRKTRISNRQVANRLDKMAKEHSLSQKVSPHKLRHSFATHVLESSG 264

Query: 303 TAHELMATYGWKTVDQAETYTK 324
               +    G   +   + YT 
Sbjct: 265 DLRAVQELLGHANLSTTQVYTH 286


>gi|29840081|ref|NP_829187.1| site-specific tyrosine recombinase XerC [Chlamydophila caviae GPIC]
 gi|75539745|sp|Q823T9|XERC_CHLCV RecName: Full=Tyrosine recombinase xerC
 gi|29834429|gb|AAP05065.1| site-specific recombinase, phage integrase family [Chlamydophila
           caviae GPIC]
          Length = 312

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 45/284 (15%), Positives = 100/284 (35%), Gaps = 31/284 (10%)

Query: 66  KKPTTLKWLISEYRKSAHW----GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR- 120
             P TL+    +      +    G L+ +S I       +  +++ +  +   T   +R 
Sbjct: 18  ASPHTLRNYCIDLNSFKSFLEKQGELSPSSPI---CLLTKERKET-ELPFSLFTKDSVRL 73

Query: 121 ---SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
                ++  K    +  + L++++   ++ ++   +  +P  ++  P+   E   P T E
Sbjct: 74  YVLELMQENKAK-RTIKRRLSAIKSFSQYCIKNRIIFEDPTETIHGPRLPKELPSPITYE 132

Query: 178 DMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRA-GVQ-HLQNNIFSIKTQKTGT 231
            ++   +        G + R   E    SGLR S+            +N+  I+  K   
Sbjct: 133 QVEILMATPDLSKYTGFRDRCLLELFYSSGLRISEIVAINHWDIDFNSNLIRIR-GKGKK 191

Query: 232 IITVELPD----GFMKLLAMTPIGK-----ETFFINNDKQKMNATQFSIWFKAKATKAGV 282
              V +         + L            + FF+N   +++        F+    ++G+
Sbjct: 192 ERLVPMTPHAAQWLQQYLHHPERAHVEQDPQAFFLNRFGKRLTTRSIDRKFQKYLRQSGL 251

Query: 283 NKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           + S   H +R   AT   + G     + A  G  +++    YT 
Sbjct: 252 SGSITPHTIRHTIATHWLENGMDLKTIQALLGHSSLETTTIYTH 295


>gi|225175744|ref|ZP_03729737.1| integrase family protein [Dethiobacter alkaliphilus AHT 1]
 gi|225168668|gb|EEG77469.1| integrase family protein [Dethiobacter alkaliphilus AHT 1]
          Length = 300

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 47/277 (16%), Positives = 93/277 (33%), Gaps = 27/277 (9%)

Query: 85  GSLAVNSRISFESYFD-----QIIRKSGD-FDYRKITTKHIRSGV----ESRKHTPSSAI 134
             L+  +   +    +      +           ++ TKH+R  +    + R +   +  
Sbjct: 20  RGLSDGTVEGYRRDLNIFTQLMVREFFPQGMILDQLETKHVRRFLVYLKKERSNDAGTRN 79

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFWSEGS 190
           + L S+R  F +   Q YV  NP   ++  K         TK++    +   +       
Sbjct: 80  RKLASLRSYFSFLEIQGYVESNPVQQLKNVKTAKLLPVFLTKDESDRLINAARMHNKPPY 139

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPD----GFMKL 244
           +       LL +G R  +     +   +L++    I   K      + L D       + 
Sbjct: 140 RDYAMMRVLLQTGCRLDEMVSLNLDSLNLEDRYMRII-GKGNKERMIPLTDKTCAALAEY 198

Query: 245 LA-MTPIGK--ETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATISA 298
           LA   P  K  +  F+N   ++++     + F     +AG+NK   + H +R    T+  
Sbjct: 199 LAGRLPEDKNEQAVFLNQRGRRISHRGVQLIFNQTCKEAGLNKERLTVHKLRHTCFTMLL 258

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335
           +AG     +    G + +   E Y     R       
Sbjct: 259 NAGVDLPTIKDIAGHENISSTEIYVHVTQREIRSAMA 295


>gi|329119991|ref|ZP_08248663.1| tyrosine recombinase XerD [Neisseria bacilliformis ATCC BAA-1200]
 gi|327463904|gb|EGF10218.1| tyrosine recombinase XerD [Neisseria bacilliformis ATCC BAA-1200]
          Length = 290

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 41/259 (15%), Positives = 94/259 (36%), Gaps = 18/259 (6%)

Query: 86  SLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL 143
            L+ N+  ++    ++   +  +    +    +  + + V   + +P S  + L++ + L
Sbjct: 17  RLSANTLAAYRRDLEKTAARLSEQGKGWLDAQSGDLAAAVYRAEASPRSQARALSACKRL 76

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFEFL 199
           + W +     A +P   +  PK++        +  +    +        G + +   E +
Sbjct: 77  YGWLLDTGQTAADPTEHLRSPKQEKTLPPVIGEAQIDALLAAPDADTPHGLRDKALLELM 136

Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKET---- 254
             +GLR S++ R      +     + T  K G    V + +  +  L             
Sbjct: 137 YATGLRVSEAVRLRQDEAKLQAGFVSTIGKGGKQRIVPMGEEAVYWLERYLAQARPQLLK 196

Query: 255 ------FFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHEL 307
                  F++  +  ++     +  +  A  AG+ + S HG+R   AT   + GA    +
Sbjct: 197 NARCDEIFVSQKRVGISRQLAWMIVEKHAAAAGIRHLSPHGLRHAFATHLVNHGADLRVV 256

Query: 308 MATYGWKTVDQAETYTKGA 326
               G  ++   E YT+ A
Sbjct: 257 QELLGHASISTTEIYTRVA 275


>gi|261416671|ref|YP_003250354.1| integrase family protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261373127|gb|ACX75872.1| integrase family protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302327068|gb|ADL26269.1| site-specific recombinase, phage integrase family [Fibrobacter
           succinogenes subsp. succinogenes S85]
          Length = 298

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 52/280 (18%), Positives = 99/280 (35%), Gaps = 27/280 (9%)

Query: 78  YRKSAHWGSLAVNS----RISFESYFDQIIRKSGDFDYRKITTKHIRSGVE-SRKHTPSS 132
           Y ++      +  +    R S E Y   I   +    + ++  K     ++  +K  P+S
Sbjct: 13  YLQTQR--RYSERTVITYRKSLEKYLATINENAPLEAFSEMNVKAFVWDLKIKQKLAPTS 70

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM--QQFKSFWSEGS 190
             + L +++   K+ VR + +  NP  +V  PKR    +    ++D+  ++F       +
Sbjct: 71  ICEHLAALKSFGKYLVRSKILQKNPAEAVPMPKRPKRLVSFLGQKDLAEEKFPELPENPT 130

Query: 191 ----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLL 245
               + RL  E +  SGLR S+        LQ     ++   K      V + D  +  L
Sbjct: 131 LPQVRARLLLELIYGSGLRISECQSLCWNQLQIKERLVRVIGKGNKERIVPITDTLISWL 190

Query: 246 AM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293
                       TP      F++ + +  +               G     S H +R   
Sbjct: 191 EKFRAVEIEAGHTPTITSYVFLSENGKPYDIRTLRNDIHNLLRDIGWEGKASPHVLRHSF 250

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLG 332
           AT   + GA    +    G   +   + YT   A+R++  
Sbjct: 251 ATHLLENGAEIMSVKEMLGHSNISTTQIYTHVNAERLKQA 290


>gi|269121304|ref|YP_003309481.1| integrase family protein [Sebaldella termitidis ATCC 33386]
 gi|268615182|gb|ACZ09550.1| integrase family protein [Sebaldella termitidis ATCC 33386]
          Length = 304

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 42/283 (14%), Positives = 96/283 (33%), Gaps = 30/283 (10%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFK 145
           + N+  S++   +    +    +++ I  + +   V+    T   ++ ++ + S+R  +K
Sbjct: 21  SENTLSSYKRDLNLFFSEVP-KNFQSIEDEEVIEYVDKLSKTVKRNTVLRKIASIRAFYK 79

Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WSEGSQPRLAFEFLLYS 202
           +    +Y+  NP  S++  KR+ +        +++          EG + ++  + L+ +
Sbjct: 80  FCYINKYITDNPTESLKNLKREFKLPEVLKLSEIKDIIDAIPNTPEGVRDKIIIKILVAT 139

Query: 203 GLRCSDSCRAGVQHLQNNIFSIKT--QKTGTIITVELPDGFMKLLAMTPIGKETFFINND 260
           G R S+     ++ ++N  +       K      + +     + +           +   
Sbjct: 140 GARISEVLTLDIKDVENQDYEFIRVLGKGSKYRLIPIYSQLEEEIKAYIENDRKILVLER 199

Query: 261 KQ--------------------KMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISA 298
           K+                          F    K  A  A + K+   H  R   AT+  
Sbjct: 200 KEKESENKNKKKGHELEYKLFLGTRRENFWKRLKKYAKNAKIEKNVYPHIFRHSVATMLI 259

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
           + GA    +    G   +   E YT    R    I N  +I  
Sbjct: 260 NNGADIRIVQEILGHVNISTTEIYTHVGKRELKEIYNKVKIGD 302


>gi|49478402|ref|YP_037892.1| site-specific tyrosine recombinase XerC [Bacillus thuringiensis
           serovar konkukian str. 97-27]
 gi|196042353|ref|ZP_03109624.1| tyrosine recombinase XerC [Bacillus cereus NVH0597-99]
 gi|218904959|ref|YP_002452793.1| tyrosine recombinase XerC [Bacillus cereus AH820]
 gi|225865812|ref|YP_002751190.1| tyrosine recombinase XerC [Bacillus cereus 03BB102]
 gi|228916468|ref|ZP_04080034.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228928879|ref|ZP_04091911.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228935145|ref|ZP_04097972.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228947550|ref|ZP_04109840.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|229123345|ref|ZP_04252549.1| Tyrosine recombinase xerC [Bacillus cereus 95/8201]
 gi|229157407|ref|ZP_04285485.1| Tyrosine recombinase xerC [Bacillus cereus ATCC 4342]
 gi|254721983|ref|ZP_05183772.1| site-specific tyrosine recombinase XerC [Bacillus anthracis str.
           A1055]
 gi|301055321|ref|YP_003793532.1| tyrosine recombinase [Bacillus anthracis CI]
 gi|49329958|gb|AAT60604.1| site-specific integrase/recombinase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|196026809|gb|EDX65445.1| tyrosine recombinase XerC [Bacillus cereus NVH0597-99]
 gi|218540108|gb|ACK92506.1| tyrosine recombinase XerC [Bacillus cereus AH820]
 gi|225791021|gb|ACO31238.1| tyrosine recombinase XerC [Bacillus cereus 03BB102]
 gi|228626134|gb|EEK82883.1| Tyrosine recombinase xerC [Bacillus cereus ATCC 4342]
 gi|228660121|gb|EEL15757.1| Tyrosine recombinase xerC [Bacillus cereus 95/8201]
 gi|228812070|gb|EEM58401.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|228824510|gb|EEM70315.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228830686|gb|EEM76291.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228843047|gb|EEM88129.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|300377490|gb|ADK06394.1| tyrosine recombinase [Bacillus cereus biovar anthracis str. CI]
          Length = 299

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 44/272 (16%), Positives = 96/272 (35%), Gaps = 26/272 (9%)

Query: 85  GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLT 138
            + +  +  S+++  +  +    + G   +  IT   +R  +      K    S  + ++
Sbjct: 18  RNYSKYTIASYQNDLEHFVQFMEREGISSFLDITYADVRLYLTTLHDEKLARKSVARKVS 77

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194
           S+R L+++ +R+ Y   NP      PK++    +    E++++           G + + 
Sbjct: 78  SLRSLYRFLMREGYRKDNPFALASLPKKELSIPKFLYAEELEELFEVSDTETPLGQRNQA 137

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE------------LPDGF 241
             E +  +G+R S+     +  +   + +I    K      +             + +G 
Sbjct: 138 LLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQRYIPFGSYAQDALITYIENGR 197

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
            +L   T       F+N     + +            KA +    S H +R   AT   D
Sbjct: 198 KQLAEKTEEQSHMVFLNAKGTPLTSRGVRYVLNELIKKASLTMRISPHMLRHTFATHMLD 257

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            GA    +    G + +   + YT    + RL
Sbjct: 258 EGADLRTVQELLGHENLSTTQIYTH-VSKERL 288


>gi|225023328|ref|ZP_03712520.1| hypothetical protein EIKCOROL_00181 [Eikenella corrodens ATCC
           23834]
 gi|224943973|gb|EEG25182.1| hypothetical protein EIKCOROL_00181 [Eikenella corrodens ATCC
           23834]
          Length = 355

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 62/342 (18%), Positives = 123/342 (35%), Gaps = 25/342 (7%)

Query: 1   MTPSLR-LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKRE 59
           M  ++R LP  + +++T  GK+ +Y+      R  LP    S F  A            +
Sbjct: 1   MKQAIRNLPMRMRQKKTSSGKVYFYYDTCAKPRKWLPL--GSDFFEALRKYADYEQEYSQ 58

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS-GD--FDYRKITT 116
            + +  ++  T + +   Y ++    +L+  ++  +      +     GD      +I +
Sbjct: 59  ELTARIEREATFRVVAERYVRTV-LPTLSPRTQSDYLYQLKFLYEYFDGDNPAPINQILS 117

Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYV-AINPCLSVERPKRKTEGIRPWT 175
             I   +E R+     A + +    V+F WA +  Y    NPC  V +  ++T      T
Sbjct: 118 VDIYEYLEWRQAAKIRANREIALFSVIFNWARKWGYTNNENPCRGVNK-YQETGRHVYIT 176

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
            E   +         Q  L      + G R +D  +     +++    I+  K  T + +
Sbjct: 177 DEQYWRLYECAERHLQ--LLMLVAYFIGQRVADCLKIRTTDIKDGELWIEQNKVQTKVRI 234

Query: 236 ELPDGFMKLLAMTPI-----GKETFFIN-----NDKQKMNATQFSIWFKAKATKAGVNKS 285
           +L     ++L +          +  F++     +  Q M              KAG+ K+
Sbjct: 235 KLTGELAEVLDLILRERGEQKHDYLFVSLGRQRHRGQPMTYAMLRGAMDRAREKAGIEKA 294

Query: 286 A---HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           A     +R  +AT + DA           G  T +  + Y +
Sbjct: 295 AFQFRDLRAKAATDTDDA-VGIEAARVLLGHTTQNMTKRYIR 335


>gi|85702955|ref|ZP_01034059.1| tyrosine recombinase XerD [Roseovarius sp. 217]
 gi|85671883|gb|EAQ26740.1| tyrosine recombinase XerD [Roseovarius sp. 217]
          Length = 323

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 41/269 (15%), Positives = 90/269 (33%), Gaps = 32/269 (11%)

Query: 88  AVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLTSMRV 142
           A N+ +++           K  +     +    I S +   +++   P++  + L+++R 
Sbjct: 22  AKNTLMAYARDLRDFTDWVKYQNLSLDNLMQPDIESYLVQCDAQGLAPATRARRLSAIRQ 81

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG-------SQPRLA 195
           L+++A  +   A NP + ++ P +     +  T++++ +      +         +    
Sbjct: 82  LYRFAFEERLRADNPAIRIKGPGKAQRLPKTLTEDEVGRLLEVAPQHGRTATERCRNACL 141

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKLL--------- 245
              L  +G+R S+     +   + +    +   K G    V L       L         
Sbjct: 142 MALLYATGMRVSELVSLPLAAARGDPQMLLVRGKGGKERMVPLSPPARTALVDWLALRDA 201

Query: 246 ----AMTPIGKETFFINNDKQK---MNATQFSIWFKAKATKAGVN---KSAHGVRKFSAT 295
                 +     + F+         +   +F    K  A KA V+    + H +R   AT
Sbjct: 202 EETARRSKGLAPSPFLFASGGTAGYLTRHRFYNLIKEFAVKAHVDPEKVTPHTLRHAFAT 261

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTK 324
                GA    +    G   +   E YT 
Sbjct: 262 HLLANGADLRVIQTLLGHADIATTEIYTH 290


>gi|71898993|ref|ZP_00681159.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella
           fastidiosa Ann-1]
 gi|71731239|gb|EAO33304.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella
           fastidiosa Ann-1]
          Length = 339

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 63/333 (18%), Positives = 116/333 (34%), Gaps = 28/333 (8%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
           +P F  + + + G + YY+  G   R   P          Y  A+     + E+      
Sbjct: 11  IPRFRVRPQ-KSGVVYYYYDHGGKPRKETPLG------RDYGLAI-KRWAELEHAQITPA 62

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVE 124
              T + +   YR      + A N++     Y + +++   D    +  I   +IR  ++
Sbjct: 63  IAVTFRHVAERYRAEVI-PTKAYNTQRMHHVYLNYLLQFFDDPPAPFESIKPVNIRQYLD 121

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVA-INPCLSVERPKRKTEGIRPWTKEDMQQFK 183
            R     SA + +     L+ WA  +      NPC  + R K +   +      D   ++
Sbjct: 122 WRPFKV-SANREVALFSHLWNWARSKGITDLPNPCGGIRRNKERGRDVYI----DDTTYR 176

Query: 184 SFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
           + +    Q  R A +    +G R SD      +H+ N    I   KTG  + + +     
Sbjct: 177 AVYQAADQTLRDAMDLAYLTGQRVSDVVSMDERHIVNGALEICQAKTGVKLAIAITGELS 236

Query: 243 KLLAMTPIGKE-------TFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKF 292
            L+      K           ++     +N  + +  F+     AG+ K       +R  
Sbjct: 237 VLIKRIFDRKRGMKLRSTRLIVDEKGLGLNWKKLAYRFRKVRAAAGIAKEVFQFRDLRAK 296

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKG 325
           +AT  AD      +  A  G  +V   E Y + 
Sbjct: 297 AATDKADLAGDMRQAQAQLGHASVTMTEHYVRK 329


>gi|327395064|dbj|BAK12486.1| tyrosine recombinase XerD [Pantoea ananatis AJ13355]
          Length = 220

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 43/211 (20%), Positives = 78/211 (36%), Gaps = 19/211 (9%)

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLA 195
           MR LF++  R++    +P   +  PK      +  ++  + +             + +  
Sbjct: 1   MRRLFQYLYREKMRTDDPSAMLAAPKLPQRLPKDLSEAQVDRLLQAPDVNVPLELRDKAM 60

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVEL-------PDGFMKLLAM 247
            E L  +GLR S+     +  +      ++   K      V L        + +M+    
Sbjct: 61  LELLYATGLRVSELVGLTLNDVSLRQGVVRVIGKGNKERLVPLGEEAVHWLEYYMEHGRP 120

Query: 248 TPIGKET---FFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG 301
             +  +T   FF +N  Q+M    F    K  A  AG++    S H +R   AT   + G
Sbjct: 121 WLLNGQTLDVFFPSNRAQQMTRQTFWHRIKHYAMLAGIDSEKLSPHVLRHAFATHLLNHG 180

Query: 302 ATAHELMATYGWKTVDQAETYTKGA-DRIRL 331
           A    +    G   +   + YT  A +R+RL
Sbjct: 181 ADLRVVQMLLGHSDLSTTQIYTHVATERLRL 211


>gi|311108190|ref|YP_003981043.1| tyrosine recombinase XerD [Achromobacter xylosoxidans A8]
 gi|310762879|gb|ADP18328.1| tyrosine recombinase XerD [Achromobacter xylosoxidans A8]
          Length = 327

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 49/297 (16%), Positives = 91/297 (30%), Gaps = 46/297 (15%)

Query: 86  SLAVNSRISFESYF--------------DQIIRKSGD------------FDYRKITTKHI 119
            L+ N+  ++                   ++  + GD               R      I
Sbjct: 26  GLSANTLAAYRRDLTGFARWLEDPEAYAREMADRHGDAAQAHALPAGPAKPLRDAGKADI 85

Query: 120 RSGVESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
            +    R      ++A + L ++R  + WA+R+     +PCL++   K+     +  +++
Sbjct: 86  EAWFAFRHEETRATTANRRLAALRRFYAWALREHRAERDPCLTLIAAKQPPRMPKTLSEQ 145

Query: 178 DMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT--QKTGT 231
            +         G     + R   E L  +GLR S+        +  N   ++    K G 
Sbjct: 146 QVDALLRAPDLGQARGLRDRAMLETLYATGLRVSELVGVRALDVSLNEGVVRVVLGKGGK 205

Query: 232 IITVELPDGFMKLLA----------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281
              V L       +                 +  FI    + M+   F    K  A  A 
Sbjct: 206 DRLVPLGAEAAHWIDLYLKSGRPELAAGRVSDALFITGRAEAMSRQAFWQLVKKYALLAD 265

Query: 282 V--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
           V    S H +R   AT   + GA    +    G   +   + YT  A      +  +
Sbjct: 266 VRAPLSPHVLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVARERLKALHAA 322


>gi|56476505|ref|YP_158094.1| integrase/recombinase [Aromatoleum aromaticum EbN1]
 gi|58616507|ref|YP_195636.1| integrase [Azoarcus sp. EbN1]
 gi|56312548|emb|CAI07193.1| integrase/recombinase [Aromatoleum aromaticum EbN1]
 gi|56315969|emb|CAI10612.1| probable integrase [Aromatoleum aromaticum EbN1]
          Length = 309

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 44/265 (16%), Positives = 98/265 (36%), Gaps = 18/265 (6%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129
           L     +     +LA N++ ++        R   D    ++  + +R+      ++RK T
Sbjct: 21  LRQRMLEDMGVRNLAPNTQSAYLKQVSAYARYF-DCSPDELGPEQVRAYQVYLTQTRKLT 79

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
           PS+      ++R L+K  +++ +        +  PKR  +     ++E++ QF +     
Sbjct: 80  PSTVSVATGALRFLYKVTLKRAWA----VEEIPMPKRSFKLPVVLSREEVSQFLASVD-H 134

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLAM 247
              R        +GLR S++    V  + +    ++    K      V L    ++ L +
Sbjct: 135 LMHRTILMTAYAAGLRVSEATHLKVSDIDSQRMVLRVDQGKGRKDRYVMLSPRLLEALRV 194

Query: 248 -TPIGKETFFI---NNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301
                + T ++   +   Q +      +  +      G+ K  + H +R   AT   ++G
Sbjct: 195 YWKSARPTLWLFPGDVPGQPITRNAVGLACQKARRACGIRKPITPHSLRHAFATHLLESG 254

Query: 302 ATAHELMATYGWKTVDQAETYTKGA 326
                +    G +++     Y K A
Sbjct: 255 TDVRTIQLLLGHRSLATTSRYLKVA 279


>gi|167630281|ref|YP_001680780.1| tyrosine recombinase xerc, putative [Heliobacterium modesticaldum
           Ice1]
 gi|167593021|gb|ABZ84769.1| tyrosine recombinase xerc, putative [Heliobacterium modesticaldum
           Ice1]
          Length = 340

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 49/308 (15%), Positives = 107/308 (34%), Gaps = 34/308 (11%)

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYR 112
           + P  +   +P  +       I  Y +  A  G+ A+++R ++ S   Q+I      D  
Sbjct: 26  NPPVAQNTQAPTAE---WDCWIDRYLRYLAAEGNHAIHTRSAYASDLAQLIELLEQTDSG 82

Query: 113 KITTKHIRSGVESRKHTP--------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP 164
                 + +       T         SS  + L + R  F++ VR+  +  +P   ++ P
Sbjct: 83  VPRLPEVSADRLRLCITRLYAVGMERSSLARKLAAWRGFFRYLVREGQLTSHPMKRLKSP 142

Query: 165 KRKTEGIRPWTKEDM------QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218
           K      +  ++ ++       + +       +     E    SGLR ++ C   +  + 
Sbjct: 143 KLGRPLPKTLSESEVSCLLSAAERRGDEPLALRNLAMVELFYASGLRVAELCGLDLGSVD 202

Query: 219 NNIFSIKT-QKTGTIITVELPDGFMKLL------------AMTPIGKETFFINNDKQKMN 265
             +  ++   K G    V + +  ++ +                      F+N+  ++++
Sbjct: 203 AGLGYVRVLGKGGKERIVPVGEQALEAISRYLKQGRPALARRQREVSPALFLNHRGRRLS 262

Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
                      A  A + +  S H +R   AT   D GA    +    G   +   + YT
Sbjct: 263 VRGAQDILSRIADGAALERGISPHTLRHTFATHLLDGGADLRSVQEMLGHAKLSTTQIYT 322

Query: 324 K-GADRIR 330
              A+R++
Sbjct: 323 HVSAERLK 330


>gi|253577466|ref|ZP_04854781.1| integrase/recombinase [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251843166|gb|EES71199.1| integrase/recombinase [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 339

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 38/259 (14%), Positives = 87/259 (33%), Gaps = 16/259 (6%)

Query: 81  SAHWGSLAVNSRISFESYFDQ--IIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLT 138
           S        NS   ++   ++  I     D     +  K +   VE + +  ++    + 
Sbjct: 55  SDDTIKFERNSLKCYQRILEEQDIEPDIYDISIDLLRNKFVMFMVEKKGYKLNTINNRIK 114

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRL 194
           +++  F +   + ++  NP   ++  K     I  +T+E +        + +    +  +
Sbjct: 115 AIKRFFTFLHEEGWIPDNPAAHLKTRKGHQPTIPSFTEEQVVALFKQPDQNTFTGFRDFV 174

Query: 195 AFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLL-----AM 247
               +L +GLR  +  +       ++++       K+     +   D   KLL     A 
Sbjct: 175 MLSLILDTGLRVGEMIKLKTSQVDIKDSQLLGVIGKSKKPRDIPFCDDVRKLLIRYIKAR 234

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATA 304
             +  + FF+    +++    F          AG+     S H +R   A +        
Sbjct: 235 GDVPSQYFFVTLHGRQLGVRTFQDTLHQYGKDAGITNVRVSPHTLRHTFAKMYILQDGDP 294

Query: 305 HELMATYGWKTVDQAETYT 323
           + L    G  + D  + Y 
Sbjct: 295 YSLQDILGHTSQDMVKKYV 313


>gi|222097276|ref|YP_002531333.1| site-specific tyrosine recombinase xerc [Bacillus cereus Q1]
 gi|229197941|ref|ZP_04324656.1| Tyrosine recombinase xerC [Bacillus cereus m1293]
 gi|221241334|gb|ACM14044.1| site-specific integrase/recombinase [Bacillus cereus Q1]
 gi|228585520|gb|EEK43623.1| Tyrosine recombinase xerC [Bacillus cereus m1293]
 gi|324327728|gb|ADY22988.1| site-specific tyrosine recombinase XerC [Bacillus thuringiensis
           serovar finitimus YBT-020]
          Length = 299

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 44/272 (16%), Positives = 96/272 (35%), Gaps = 26/272 (9%)

Query: 85  GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLT 138
            + +  +  S+++  +  +    + G   +  IT   +R  +      K    S  + ++
Sbjct: 18  RNYSKYTIASYQNDLEHFVQFMEREGISSFLDITYADVRLYLTTLHDEKLARKSVARKVS 77

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194
           S+R L+++ +R+ Y   NP      PK++    +    E++++           G + + 
Sbjct: 78  SLRSLYRFLMREGYRKDNPFALASLPKKELSIPKFLYAEELEELFEVSDTETPLGQRNQA 137

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE------------LPDGF 241
             E +  +G+R S+     +  +   + +I    K      +             + +G 
Sbjct: 138 LLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQRYIPFGSYAQDALITYIENGR 197

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
            +L   T       F+N     + +            KA +    S H +R   AT   D
Sbjct: 198 KQLAKKTEEQSHMVFLNAKGTPLTSRGVRYVLNELIKKASLTMRISPHMLRHTFATHMLD 257

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            GA    +    G + +   + YT    + RL
Sbjct: 258 EGADLRTVQELLGHENLSTTQIYTH-VSKERL 288


>gi|300858389|ref|YP_003783372.1| tyrosine recombinase [Corynebacterium pseudotuberculosis FRC41]
 gi|300685843|gb|ADK28765.1| tyrosine recombinase [Corynebacterium pseudotuberculosis FRC41]
 gi|302206103|gb|ADL10445.1| site-specific tyrosine recombinase XerD [Corynebacterium
           pseudotuberculosis C231]
 gi|302330656|gb|ADL20850.1| site-specific tyrosine recombinase XerD [Corynebacterium
           pseudotuberculosis 1002]
 gi|308276340|gb|ADO26239.1| site-specific tyrosine recombinase XerD [Corynebacterium
           pseudotuberculosis I19]
          Length = 310

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 55/275 (20%), Positives = 96/275 (34%), Gaps = 34/275 (12%)

Query: 90  NSRISFESYFDQIIRKSGDFDYRKITTKHIRSG-VESRKHTP---------SSAIQFLTS 139
           N R   + Y D I  + G  D   +T++ + S  ++ R+  P         SSA + L  
Sbjct: 28  NYRRDVQRYLDWIESR-GIDDLGILTSRDVESYVLDLRRGDPDTGKQPLAASSAGRALVV 86

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-------WSEGSQP 192
            R L K+A+ +  ++++    V  P          +  ++++  S          E  + 
Sbjct: 87  ARGLHKFAMMEGLISVDVAGEVSPPSTGRHLPDTLSVTEVEELISAIPTDNIATPEDLRD 146

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDGFMKLLAM- 247
               E L  +G R S+     V  +    +         K      V +     K L   
Sbjct: 147 AALIELLYGTGARISEIMNLTVDEVTVLEETEGMLRIVGKGDKHRIVPVGSMAQKALRRY 206

Query: 248 --------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS 297
                   T       F+N     ++        K+ A +AGV K  S H +R   A+  
Sbjct: 207 LVRARPQLTKGKSHALFLNKRGGALSRQSAWQILKSSARRAGVQKDISPHTLRHSYASHL 266

Query: 298 ADAGATAHELMATYGWKTVDQAETYTK-GADRIRL 331
            + GA    +    G  +V   + YT   AD +R+
Sbjct: 267 LEGGADVRVVQELLGHSSVTTTQIYTHITADNLRI 301


>gi|326204493|ref|ZP_08194350.1| integrase family protein [Clostridium papyrosolvens DSM 2782]
 gi|325985286|gb|EGD46125.1| integrase family protein [Clostridium papyrosolvens DSM 2782]
          Length = 301

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 42/285 (14%), Positives = 92/285 (32%), Gaps = 33/285 (11%)

Query: 88  AVNSRISFESYFDQIIRKSGDF------DYRKITTKHIRSGVE----SRKHTPSSAIQFL 137
           + ++  ++ S    +             +   + T H+    +     +     +A +  
Sbjct: 23  SESTIKAYRSDLTLLNEFLDLRYKSLLNNLSAMKTSHVLQYRDFLFHKKGFKRKTADRKY 82

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRK-TEGIRPWTKEDMQQFKSFWSEG-----SQ 191
              R   ++     ++  NP L V+  K K T+       E++ Q     +       ++
Sbjct: 83  FCFRKFCEYLELAGFIEKNPALEVKHKKYKDTKAPNFLEWEEIYQIIDVVALFETENTAR 142

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAM-- 247
                  L Y G R S+      + +    N  +I  +KT T   + +       +    
Sbjct: 143 DAAMLSVLAYLGCRRSEVIDLDWKDIDFQKNEIAIYRRKTKTYDYLPMHPNLENAMRRYY 202

Query: 248 ---TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK----SAHGVRKFSATISADA 300
                  K   F++    +++ T F   F      +G+ K    + H  R    +     
Sbjct: 203 AENRFTPKGPLFLSERGNRLSVTAFKQMFDKAVLYSGIKKEFDITPHTFRHSFISNMIRE 262

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345
           GA+  E+    G   +   + Y        +G ++ R I S + +
Sbjct: 263 GASIAEIQEYTGHSDLGSLQVYFH------MGTQHKRNILSKIPA 301


>gi|227824418|ref|ZP_03989250.1| recombinase [Acidaminococcus sp. D21]
 gi|226904917|gb|EEH90835.1| recombinase [Acidaminococcus sp. D21]
          Length = 298

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 45/270 (16%), Positives = 92/270 (34%), Gaps = 22/270 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT---PSSAIQFLTSMR 141
             LA N+R S+     ++         ++I+   I + +   K      +S+ + L +++
Sbjct: 22  MGLARNTRESYGRDL-RLFAVWVKKPIKEISRDDILTYMSVLKAQNYAVTSSARKLAALK 80

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFE 197
             F++   +  + ++PC  VE   R     +  + +++ +          EG + R   E
Sbjct: 81  AFFRFMTAEGTIEVDPCEVVESETRGMVLPKVLSVDEVNRLFEAPDLDTPEGYRDRTMLE 140

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELP----DGFMKLLAMTP--- 249
            +  +G+R S+     V  +      +    K      + L     +   + L+      
Sbjct: 141 VMYATGMRVSELLALKVGSVNLASHYVIAYGKGAKERLIPLGHYAIEYLKEYLSRVRPHF 200

Query: 250 ----IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGAT 303
                  +  F+      M   +F    K    K  + KS   H +R   AT   D GA 
Sbjct: 201 VKENRPCDDLFLTIRGTGMTRQRFWQLIKNYGLKVHIAKSLTPHILRHSFATHMLDNGAD 260

Query: 304 AHELMATYGWKTVDQAETYTKGADRIRLGI 333
              +    G   +   + YT   +     I
Sbjct: 261 LRTVQELLGHSDISTTQIYTHLTNHRLKAI 290


>gi|317476381|ref|ZP_07935630.1| tyrosine recombinase XerC [Bacteroides eggerthii 1_2_48FAA]
 gi|316907407|gb|EFV29112.1| tyrosine recombinase XerC [Bacteroides eggerthii 1_2_48FAA]
          Length = 294

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 47/263 (17%), Positives = 96/263 (36%), Gaps = 23/263 (8%)

Query: 85  GSLAVNSRISFESYFDQI----IRKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFL 137
            + +  +   +++   ++        GD     +    IR  +     R   P++  + L
Sbjct: 15  RNYSKGTVRYYQADILELQKFGEELLGDLTPSDVDAGLIREWITSLMDRGCAPNTVNRKL 74

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-----EGSQP 192
           +S+R  +K+ +R+  VA +P   +  PK+K        + D+ +           EG + 
Sbjct: 75  SSVRSYYKYLLRKGMVAADPLQKITGPKKKKPLPVFLREGDVNRLLDDVDFGEGFEGCRD 134

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLA----- 246
           RL  E    +G+R S+      + +  +   IK T K      +   +     +      
Sbjct: 135 RLIIEMFYVTGMRLSELIGLDDKDIDFSASLIKVTGKRNKQRLLPFDEELRCSMQEYVNV 194

Query: 247 ---MTPIGKETFFINNDKQKMNATQFSIWFKA--KATKAGVNKSAHGVRKFSATISADAG 301
                P+  + FFI    +++N +  +   K           +S H +R   AT   + G
Sbjct: 195 RNQALPVRSDAFFIRKTGERLNRSIVAYIVKRNLSKVVTVKKRSPHVLRHTFATAMLNNG 254

Query: 302 ATAHELMATYGWKTVDQAETYTK 324
           A    +    G +++   E YT 
Sbjct: 255 ADLGSIKELLGHESLATTEVYTH 277


>gi|254522819|ref|ZP_05134874.1| tyrosine recombinase XerD [Stenotrophomonas sp. SKA14]
 gi|219720410|gb|EED38935.1| tyrosine recombinase XerD [Stenotrophomonas sp. SKA14]
          Length = 325

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 47/268 (17%), Positives = 84/268 (31%), Gaps = 30/268 (11%)

Query: 86  SLAVNSRISFESYFDQIIR-----KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSM 140
            LA  +  S+    + + R       G     +       +       +P S  + L+++
Sbjct: 40  GLARATLDSYRRDLEGLARWMDGRDGGLAGIERPGLFDYLAWRTRHGWSPRSNARLLSAL 99

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLAF 196
           R  F   VR+   + +P   ++ PK      +   +  +    +        G + R   
Sbjct: 100 RAYFADGVRRGERSEDPSALLDPPKLPRLLPKALAESQIDALLAAPDVERPLGLRDRAML 159

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLL---------- 245
           E +  +GLR S+        +      I+ T K      V L +     L          
Sbjct: 160 ELMYAAGLRVSELVLLPATSVNLRQGVIRVTGKGSKERLVPLGEESQHWLERYLQQSRPQ 219

Query: 246 -------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSAT 295
                       G+   F+      +    F    K  A  AG++    S HG+R   AT
Sbjct: 220 LVGKGRVQALADGQTPLFVEPTLHALTRQAFWHLVKRHAQVAGIDPARISPHGLRHSFAT 279

Query: 296 ISADAGATAHELMATYGWKTVDQAETYT 323
              + GA    L    G  ++   + YT
Sbjct: 280 HLLNRGADLRALQMLLGHSSLSTTQIYT 307


>gi|294790009|ref|ZP_06755213.1| putative phage integrase [Simonsiella muelleri ATCC 29453]
 gi|294482052|gb|EFG29775.1| putative phage integrase [Simonsiella muelleri ATCC 29453]
          Length = 347

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 56/338 (16%), Positives = 108/338 (31%), Gaps = 31/338 (9%)

Query: 13  KERTRH-GKIIYYF---RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
           ++R R  GKI+ Y+      +G+R+ +           Y  A+           SP +  
Sbjct: 14  RKRQRKNGKIVIYYFGEVSQNGKRVEISLGT------EYFVAVKKWAEINIEKISPSQS- 66

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG---DFDYRKITTKHIRSGVES 125
            T      +Y          VN+    ++    +        D    +IT +H+   +  
Sbjct: 67  ITFSQAADKYFSEVIEPKGKVNTINGVKNSIKSLKTFFSTPKDAPLHEITPQHLNRFLAW 126

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVA---INPCLSVERPKRKTEGIRPWTKEDMQQF 182
           R   PSSA   +     +F+ A +  Y+     NP   V++ K +         +     
Sbjct: 127 RSSAPSSANVEIAFFSAIFEHAQKSGYIDFEKKNPVKGVKKNKIEKRDNYI-NDKLFDVV 185

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
                   Q R   +  L +G R  D C      + + I +IK  KT   +  E+     
Sbjct: 186 YEHAD--QQMRDLMDIALLTGQRPIDICSLHTSQISDGILNIKQVKTSARLRFEISGSLK 243

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWF---KAKATK-------AGVNKSAHGVRKF 292
           +++          F+N   + +N    + WF   + +  +          N     +R  
Sbjct: 244 EIIDRIAPENGFLFLNKHGKPLNRQLITNWFLNLRKQIMQERPELEEELRNFQFRDLRAK 303

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
           +AT +              G  + +    Y +     +
Sbjct: 304 AATDAYLQ-NDKETARELLGHTSTNMTNRYIRQVKVQK 340


>gi|294637959|ref|ZP_06716226.1| tyrosine recombinase XerC [Edwardsiella tarda ATCC 23685]
 gi|291088891|gb|EFE21452.1| tyrosine recombinase XerC [Edwardsiella tarda ATCC 23685]
          Length = 303

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 45/279 (16%), Positives = 95/279 (34%), Gaps = 20/279 (7%)

Query: 66  KKPTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRS 121
               TL   +S + +       L+  +  ++      II   ++SG  D+  + +  +R+
Sbjct: 3   SSAETLNAPVSAFLQMLRVERQLSPRTVDTYRRQLAAIIALLQESGVTDWLALDSARVRA 62

Query: 122 GVESRKHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
            V   +     P+S    L+++R    W V    +A NP   V  P++     +    +D
Sbjct: 63  LVARSRRQGLEPASLALRLSALRSFLDWQVSCGALAANPAKGVAAPRQGRHLPKNLDVDD 122

Query: 179 MQQFKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIIT 234
           + +  +     +   + R   E +   GLR S+      +HL           K      
Sbjct: 123 VNRLLAIDESDTLAVRDRAMLELMYGGGLRLSELVGLDCRHLDLATGEVWVLGKGSKERR 182

Query: 235 VELPDGFMKLLA-------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKS 285
           + +    ++ +              +  FI++   +++       F     K GV  +  
Sbjct: 183 LPIGREAVRWVEKWLALRIALQPQDDALFISSRGGRISPRNVQKRFAEWGVKQGVTSHIH 242

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            H +R   AT   ++      +    G   +   + YT 
Sbjct: 243 PHKLRHSFATHLLESSGDLRAVQELLGHANLSTTQIYTH 281


>gi|294085482|ref|YP_003552242.1| tyrosine recombinase XerD [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292665057|gb|ADE40158.1| tyrosine recombinase XerD [Candidatus Puniceispirillum marinum
           IMCC1322]
          Length = 311

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 55/285 (19%), Positives = 96/285 (33%), Gaps = 34/285 (11%)

Query: 88  AVNSRISFESYFDQI--IRKSGDFDYRKITTKHIRSGVES---RKHTPSSAIQFLTSMRV 142
           A N+  ++    + +  I +  D      T   +R  + +   R+ +  S  + L+++R 
Sbjct: 29  AANTLAAYRRDLNDVATIMQGIDKTLHNATVDDLRQAIHAWHLRRLSARSVARRLSALRQ 88

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW------SEGSQPRLAF 196
              W V       NP   ++ P       +  T+ ++             +   + R   
Sbjct: 89  FMGWLVEDNIRIDNPMRWIDSPSVPAPAPKSLTEAEVIALLKAANALEPEAAAVRARAIL 148

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKLL---------A 246
           E    +GLR S+  +  V   + N    + T K G    V L D     +          
Sbjct: 149 EIFYATGLRVSEVVKLQVAQFRRNPESLLVTGKGGRERVVPLGDAAKTAVQYWIEIRDRH 208

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGAT 303
              +  +  F   D   M   QF+   K+ A  AG+N    S H +R   AT   + GA 
Sbjct: 209 AAALMSDYLFPMGDG-PMTRHQFASLLKSLALAAGINPDRVSPHVLRHSFATHMLNRGAD 267

Query: 304 AHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
              L    G   +   + YT              R++ +V S  P
Sbjct: 268 LRSLQTLLGHADITTTQIYTATR---------PDRLAGLVASAHP 303


>gi|323703102|ref|ZP_08114757.1| integrase family protein [Desulfotomaculum nigrificans DSM 574]
 gi|323531996|gb|EGB21880.1| integrase family protein [Desulfotomaculum nigrificans DSM 574]
          Length = 317

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 49/295 (16%), Positives = 98/295 (33%), Gaps = 40/295 (13%)

Query: 84  WGSLAVNS-RISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT---PSSAIQFLTS 139
           +   A+++ +  + S  + I    G    + I T  ++            P++  +    
Sbjct: 15  YKIYAISTWKNYYRSIKNHIFPALGHILLKDIKTDDVQRLYNKMAKAGLAPATIRRNHQI 74

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199
           +      AV+ + ++ NP  +V+ PK     +R  T E+M +F S   E      AF  L
Sbjct: 75  IHSCLNQAVKNKLLSWNPADAVKLPKLNDTPVRTMTPEEMAKFISVL-ENDLWGAAFLTL 133

Query: 200 LYSGLRCSDSCRAGVQHLQ-----------------NNIFSIKTQKTGTIITVELPDGFM 242
           L +G+   +      Q +                    +  ++ +   +  T+ +P+   
Sbjct: 134 LGTGISLGELLALRWQDIDLKSKVLTINQALARTKSRGLIFVEPKTDKSKRTIPMPEPVA 193

Query: 243 KL------------LAMTP--IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA-- 286
           +             LA  P    ++  F       ++   F+  F     KA V K    
Sbjct: 194 EALQKHRVQMAQIKLAAGPKYTDQDLVFCTTYGTPIHPRNFTRKFYTLREKAKVPKDINL 253

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGA-DRIRLGIKNSRRI 339
           H +R   AT   + G     +    G   +     TY+  + D  R       ++
Sbjct: 254 HALRHTFATRLLEEGENLKVVQDLLGHADISTTANTYSHVSPDVKRKAAAKMDKL 308


>gi|304321470|ref|YP_003855113.1| putative integrase/recombinase DNA recombination protein
           [Parvularcula bermudensis HTCC2503]
 gi|303300372|gb|ADM09971.1| putative integrase/recombinase DNA recombination protein
           [Parvularcula bermudensis HTCC2503]
          Length = 323

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 36/265 (13%), Positives = 84/265 (31%), Gaps = 25/265 (9%)

Query: 85  GSLAVNSRISFESYFDQII-----RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
              +  +  ++    +++      R +                +  +  + ++A   L++
Sbjct: 23  RGASPRTLRNYGRDLERVSVFLFQRGTSLLRATAADLSAYIDHLHGQGRSAATAALCLSA 82

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW--------SEGSQ 191
           +R  + +A  +     NP   V+RPK +    +  + ++                    +
Sbjct: 83  LRQFYLFAYTEGMREDNPAELVDRPKARRPLPKILSIDEAASLLDLARDEAACMKPGPLR 142

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLL----- 245
                E L  +GLR S+ C      ++     +    K      V L DG +  +     
Sbjct: 143 LHALLEVLYATGLRVSELCSLPRGAVRAGEPWMTVLGKGQKERLVPLTDGAVMAVSHYVA 202

Query: 246 -AMTPIGKETFFINNDKQ--KMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISAD 299
                     F   +  +   +   + +   K  + +AG++    S H +R   A+   +
Sbjct: 203 VQTDAERASAFLFPSRGKTGHITTARVAQLLKELSARAGIDPTRVSPHVLRHAFASHLLE 262

Query: 300 AGATAHELMATYGWKTVDQAETYTK 324
            GA    +    G   +   + YT 
Sbjct: 263 GGADLRIVQQLLGHADISTTQIYTH 287


>gi|30263835|ref|NP_846212.1| site-specific tyrosine recombinase XerC [Bacillus anthracis str.
           Ames]
 gi|47529259|ref|YP_020608.1| site-specific tyrosine recombinase XerC [Bacillus anthracis str.
           'Ames Ancestor']
 gi|49186681|ref|YP_029933.1| site-specific tyrosine recombinase XerC [Bacillus anthracis str.
           Sterne]
 gi|165873312|ref|ZP_02217917.1| tyrosine recombinase XerC [Bacillus anthracis str. A0488]
 gi|167642028|ref|ZP_02400258.1| tyrosine recombinase XerC [Bacillus anthracis str. A0193]
 gi|170689658|ref|ZP_02880838.1| tyrosine recombinase XerC [Bacillus anthracis str. A0465]
 gi|170709363|ref|ZP_02899777.1| tyrosine recombinase XerC [Bacillus anthracis str. A0389]
 gi|177655993|ref|ZP_02937120.1| tyrosine recombinase XerC [Bacillus anthracis str. A0174]
 gi|229603261|ref|YP_002868069.1| tyrosine recombinase XerC [Bacillus anthracis str. A0248]
 gi|254683462|ref|ZP_05147322.1| site-specific tyrosine recombinase XerC [Bacillus anthracis str.
           CNEVA-9066]
 gi|254735869|ref|ZP_05193575.1| site-specific tyrosine recombinase XerC [Bacillus anthracis str.
           Western North America USA6153]
 gi|254739605|ref|ZP_05197299.1| site-specific tyrosine recombinase XerC [Bacillus anthracis str.
           Kruger B]
 gi|254751200|ref|ZP_05203239.1| site-specific tyrosine recombinase XerC [Bacillus anthracis str.
           Vollum]
 gi|254759317|ref|ZP_05211342.1| site-specific tyrosine recombinase XerC [Bacillus anthracis str.
           Australia 94]
 gi|30258479|gb|AAP27698.1| tyrosine recombinase XerC [Bacillus anthracis str. Ames]
 gi|47504407|gb|AAT33083.1| tyrosine recombinase XerC [Bacillus anthracis str. 'Ames Ancestor']
 gi|49180608|gb|AAT55984.1| site-specific recombinase, phage integrase family [Bacillus
           anthracis str. Sterne]
 gi|164710950|gb|EDR16522.1| tyrosine recombinase XerC [Bacillus anthracis str. A0488]
 gi|167510008|gb|EDR85424.1| tyrosine recombinase XerC [Bacillus anthracis str. A0193]
 gi|170125737|gb|EDS94650.1| tyrosine recombinase XerC [Bacillus anthracis str. A0389]
 gi|170666382|gb|EDT17165.1| tyrosine recombinase XerC [Bacillus anthracis str. A0465]
 gi|172079892|gb|EDT65000.1| tyrosine recombinase XerC [Bacillus anthracis str. A0174]
 gi|229267669|gb|ACQ49306.1| tyrosine recombinase XerC [Bacillus anthracis str. A0248]
          Length = 299

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 44/272 (16%), Positives = 96/272 (35%), Gaps = 26/272 (9%)

Query: 85  GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLT 138
            + +  +  S+++  +  +    + G   +  IT   +R  +      K    S  + ++
Sbjct: 18  RNYSKYTIASYQNDLEHFVQFMEREGISSFLDITYADVRLYLTTLHDEKLARKSVARKVS 77

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194
           S+R L+++ +R+ Y   NP      PK++    +    E++++           G + + 
Sbjct: 78  SLRSLYRFLMREGYRKDNPFALASLPKKELSIPKFLYAEELEELFEVSDTETPLGQRNQA 137

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE------------LPDGF 241
             E +  +G+R S+     +  +   + +I    K      +             + +G 
Sbjct: 138 LLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQRYIPFGSYAQDALITYIENGR 197

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
            +L   T       F+N     + +            KA +    S H +R   AT   D
Sbjct: 198 KQLAEKTEEQSHMVFLNAKGTPLTSRGVRYVLNELIKKASLTMRISPHILRHTFATHMLD 257

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            GA    +    G + +   + YT    + RL
Sbjct: 258 EGADLRTVQELLGHENLSTTQIYTH-VSKERL 288


>gi|325107018|ref|YP_004268086.1| tyrosine recombinase XerD subunit [Planctomyces brasiliensis DSM
           5305]
 gi|324967286|gb|ADY58064.1| tyrosine recombinase XerD subunit [Planctomyces brasiliensis DSM
           5305]
          Length = 309

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 39/274 (14%), Positives = 91/274 (33%), Gaps = 28/274 (10%)

Query: 77  EYRKSAHWGSLAVNSRISFE----SYFDQIIRKSG----DFDYRKITTKHIRSGVESRKH 128
            Y +     + +  +R ++     S+ D    + G      D      +   + +    +
Sbjct: 10  RYLRHER--NASELTRKAYAEDFASFLDYCEDRHGYFPEPRDVDTTFLRGYLAYLHDCGY 67

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK----S 184
             ++  + L  +R LF++ +R++    NP  ++  P+   +     T  ++ Q      +
Sbjct: 68  QRTTIARRLACLRSLFRYCLREQLCDSNPAKALRTPRTGRKLPHYLTTSEVSQLLEAPPA 127

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE-------- 236
               G + R   E L  +GLR ++     ++    +   +  +  G    +         
Sbjct: 128 NHPLGIRDRAILETLYTAGLRVAELVALDIEDWDRDANVLLVRGKGRKERIAPVGSYAER 187

Query: 237 ----LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVR 290
                 +            ++  F+N    ++         +     +G+    S H +R
Sbjct: 188 ALSRWLEIREVGPRANSDDQQAIFLNKFGTRLTTRSVGRLLEKHLQTSGLSNKTSPHTLR 247

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              AT   D GA    +    G K++   + YT 
Sbjct: 248 HSFATHLLDGGADLRSVQELLGHKSLTTTQIYTH 281


>gi|206978533|ref|ZP_03239383.1| tyrosine recombinase XerC [Bacillus cereus H3081.97]
 gi|217961251|ref|YP_002339819.1| site-specific tyrosine recombinase XerC [Bacillus cereus AH187]
 gi|229140473|ref|ZP_04269028.1| Tyrosine recombinase xerC [Bacillus cereus BDRD-ST26]
 gi|206743256|gb|EDZ54713.1| tyrosine recombinase XerC [Bacillus cereus H3081.97]
 gi|217067516|gb|ACJ81766.1| tyrosine recombinase XerC [Bacillus cereus AH187]
 gi|228643034|gb|EEK99310.1| Tyrosine recombinase xerC [Bacillus cereus BDRD-ST26]
          Length = 299

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 44/272 (16%), Positives = 96/272 (35%), Gaps = 26/272 (9%)

Query: 85  GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLT 138
            + +  +  S+++  +  +    + G   +  IT   +R  +      K    S  + ++
Sbjct: 18  RNYSKYTIASYQNDLEHFVQFMEREGISSFLDITYADVRLYLTTLHDEKLARKSVARKVS 77

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194
           S+R L+++ +R+ Y   NP      PK++    +    E++++           G + + 
Sbjct: 78  SLRSLYRFLMREGYRKDNPFALASLPKKELSIPKFLYAEELEELFEVSDTKTPLGQRNQA 137

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE------------LPDGF 241
             E +  +G+R S+     +  +   + +I    K      +             + +G 
Sbjct: 138 LLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQRYIPFGSYAQDALITYIENGR 197

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
            +L   T       F+N     + +            KA +    S H +R   AT   D
Sbjct: 198 KQLAKKTEEQSHMVFLNAKGTPLTSRGVRYVLNELIKKASLTMRISPHMLRHTFATHMLD 257

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            GA    +    G + +   + YT    + RL
Sbjct: 258 EGADLRTVQELLGHENLSTTQIYTH-VSKERL 288


>gi|108799908|ref|YP_640105.1| site-specific tyrosine recombinase XerD [Mycobacterium sp. MCS]
 gi|119869018|ref|YP_938970.1| site-specific tyrosine recombinase XerD [Mycobacterium sp. KMS]
 gi|108770327|gb|ABG09049.1| tyrosine recombinase XerD subunit [Mycobacterium sp. MCS]
 gi|119695107|gb|ABL92180.1| tyrosine recombinase XerD subunit [Mycobacterium sp. KMS]
          Length = 318

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 44/274 (16%), Positives = 92/274 (33%), Gaps = 35/274 (12%)

Query: 85  GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGV----------ESRKHTPS 131
             +A N+  S+     +        G  D  K+T   +   +           ++  +  
Sbjct: 26  RGVAANTLSSYRRDLRRYSEHLTGRGVEDLAKVTESDVSDFLVALRRGDPDTGAQALSAV 85

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF--------K 183
           SA + L ++R L ++A  +    ++   +V+ P       +  + +++           +
Sbjct: 86  SAARALIAVRGLHRFATAEGLTDVDVARAVKPPTPGRRLPKSLSIDEVLALLDGAGGDSE 145

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFM 242
           +      + R   E L  +G R S++    +  +  +    +   K G    V +    +
Sbjct: 146 ADGPLTLRNRALLELLYSTGARISEAVGLDIDDVDTHARSVLLRGKGGKQRLVPIGRPAV 205

Query: 243 KLL-----------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGV 289
             L           A    G    F+N    +++        +  A +AG+    S H +
Sbjct: 206 SALDAYLVRGRPDLARRGRGTPAIFLNARGGRLSRQSAWQVLQDAAERAGITSAVSPHTL 265

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           R   AT   D GA    +    G  +V   + YT
Sbjct: 266 RHSFATHLLDGGADVRVVQELLGHASVTTTQIYT 299


>gi|119946910|ref|YP_944590.1| tyrosine recombinase XerD [Psychromonas ingrahamii 37]
 gi|119865514|gb|ABM04991.1| tyrosine recombinase XerD subunit [Psychromonas ingrahamii 37]
          Length = 298

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 44/285 (15%), Positives = 100/285 (35%), Gaps = 31/285 (10%)

Query: 75  ISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE-------- 124
           I ++  S  W    L+ N+  S+     +++          + +      ++        
Sbjct: 6   IDQFLDSL-WLERGLSQNTLESYRHDL-RLVEIFLATRLVSLCSASSLDLIDYFSCRLSG 63

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
            +++  +S  + ++++R  +++  R++    +P   +E PK      +  ++ ++    S
Sbjct: 64  EKEYKNASTARLMSALRRYYQYLCREKIREDDPSAKLESPKIIKPLPKSLSESEVDGLLS 123

Query: 185 FWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPD 239
                     + +   E L  +GLR S+     ++ +      ++ T K      V L +
Sbjct: 124 SPDLTDSVQFRDKAMLELLYATGLRVSELVGLSMEEINLKQGVVRVTGKGDKTRLVPLGE 183

Query: 240 GFMKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SA 286
             +  +                 +  F +     M    F    K  A   G++K   S 
Sbjct: 184 EAIYWVERYIEEARPDLLKGQSSDVLFPSRRATVMVRQTFWHRIKFYAQLCGIDKEALSP 243

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIR 330
           H +R   AT   + GA    +    G   +   + YT  A DR++
Sbjct: 244 HVLRHAFATHLLNYGADLRVVQMLLGHSNLSTTQIYTHIAQDRLK 288


>gi|329962250|ref|ZP_08300256.1| putative tyrosine recombinase XerC [Bacteroides fluxus YIT 12057]
 gi|328530358|gb|EGF57235.1| putative tyrosine recombinase XerC [Bacteroides fluxus YIT 12057]
          Length = 294

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 45/263 (17%), Positives = 95/263 (36%), Gaps = 23/263 (8%)

Query: 85  GSLAVNSRISFESYFDQI----IRKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFL 137
            + +  +   + S   ++        GD     I  + +R  + S        S+  + L
Sbjct: 15  RNYSEGTVKYYRSDILELQDFGKEMLGDLTPSDIDAELVREWIASLMDRGCASSTINRKL 74

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-----EGSQP 192
           +S+R  +K+ +R+  VA++P   +  PK+K        + +M +           EG + 
Sbjct: 75  SSIRAYYKFLLRRGEVAVDPLRKITGPKKKKPLPVFLREGEMDKLLDDTDFGEGFEGCRN 134

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLA----- 246
            L  E    +G+R S+      + +  +   IK T K      +   +     +      
Sbjct: 135 HLIIEMFYATGMRLSELIGLDDKDVDYSASLIKVTGKRNKQRLIPFDEELKFSMQEYVNV 194

Query: 247 ---MTPIGKETFFINNDKQKMNATQFSIWFKA--KATKAGVNKSAHGVRKFSATISADAG 301
                P+  + FF+  + +++  +  +   K           +S H +R   AT   + G
Sbjct: 195 RNETIPVRSDAFFVRENGKRLYRSIVAYLVKRNLSKVVTVKKRSPHVLRHTFATAMLNNG 254

Query: 302 ATAHELMATYGWKTVDQAETYTK 324
           A    +    G +++   E YT 
Sbjct: 255 ADLGSIKELLGHESLATTEVYTH 277


>gi|298386165|ref|ZP_06995722.1| tyrosine recombinase XerC [Bacteroides sp. 1_1_14]
 gi|298261393|gb|EFI04260.1| tyrosine recombinase XerC [Bacteroides sp. 1_1_14]
          Length = 293

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 52/276 (18%), Positives = 103/276 (37%), Gaps = 24/276 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIR----KSGDFDYRKITTKHIRSGV---ES 125
           LI  +     +  + +  + +++     Q+      + G FD  ++  + IR  +     
Sbjct: 2   LIKSFLDYLRYERNYSEKTVLAYGEDIKQLQEFAQEEYGKFDPLEVEGELIREWIVSLMD 61

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           R +T +S  + L+S+R  +K+ +RQ  V ++P   +  PK K        + +M +    
Sbjct: 62  RGYTSTSVNRKLSSLRSFYKYLLRQGEVTVDPLRKITGPKNKKPLPVFLKENEMDKLLDD 121

Query: 186 WS-----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPD 239
                  +G + RL  E    +G+R S+      + +  +   +K T K      +   D
Sbjct: 122 TDFGEGFKGCRDRLIIEMFYATGMRLSELIGLDDKDVDFSASLLKVTGKRNKQRLIPFGD 181

Query: 240 GFMKLL--------AMTPIGKETFFINNDKQKMNATQFSIWFKA-KATKAGVNK-SAHGV 289
              +L+           P   + FFI  D  ++         K   +  A + K S H +
Sbjct: 182 ELKELMLEYINVRNEAIPERSKAFFIKEDGGRLYKNLVYNLVKRNLSKVATLKKRSPHVL 241

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           R   AT   +  A    +    G +++   E Y   
Sbjct: 242 RHTFATTMLNNDAELGAVKELLGHESIATTEIYAHA 277


>gi|219669732|ref|YP_002460167.1| integrase family protein [Desulfitobacterium hafniense DCB-2]
 gi|219539992|gb|ACL21731.1| integrase family protein [Desulfitobacterium hafniense DCB-2]
          Length = 298

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 45/272 (16%), Positives = 94/272 (34%), Gaps = 22/272 (8%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQII----RKSGDFD-------YRKITTKHIRSGV 123
           +S +       + + ++ +++     Q      R+ G+               +     +
Sbjct: 7   LSLFDGHLKTQNRSQHTLMAYHKDLIQFFVFAARELGEEPEKVTVDQVDIYIVRSFLGEM 66

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
             R     S  + L+++R  FK+  R+  +  NP   +  PK   +     + E++ +  
Sbjct: 67  TDRGLERKSMARKLSALRAFFKFLCREGILQKNPIQRIATPKLGRKLPHFLSLEELDRLI 126

Query: 184 SFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVEL- 237
                    G++ ++  E L  SGLR S+      Q +      ++ +  G     V L 
Sbjct: 127 RTPDCATLLGARDQVILELLYGSGLRVSELADLNRQDIDAGSSLLRVRGKGNKERIVPLT 186

Query: 238 ---PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKF 292
               +   + L M    +E   +N    +++           A +AG+  +   H +R  
Sbjct: 187 NYALEAARQYLEMREDKQEALLLNYQGTRLSVRSIRRILDGLALEAGLSQHLHPHMLRHS 246

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324
            AT   D GA    +    G   +   + YT 
Sbjct: 247 FATHLLDGGADLRSVQELLGHAKLSSTQIYTH 278


>gi|52141657|ref|YP_085172.1| site-specific tyrosine recombinase XerC [Bacillus cereus E33L]
 gi|51975126|gb|AAU16676.1| site-specific integrase/recombinase XerD protein [Bacillus cereus
           E33L]
          Length = 299

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 44/272 (16%), Positives = 96/272 (35%), Gaps = 26/272 (9%)

Query: 85  GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLT 138
            + +  +  S+++  +  +    + G   +  IT   +R  +      K    S  + ++
Sbjct: 18  RNYSKYTIASYQNDLEHFVQFMEREGISSFLDITYADVRLYLTTLHDEKLARKSVARKVS 77

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194
           S+R L+++ +R+ Y   NP      PK++    +    E++++           G + + 
Sbjct: 78  SLRSLYRFLMREGYRKDNPFALASLPKKELSIPKFLYAEELEELFEVSDTATPLGQRNQA 137

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE------------LPDGF 241
             E +  +G+R S+     +  +   + +I    K      +             + +G 
Sbjct: 138 LLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQRYIPFGSYAQDALITYIENGR 197

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
            +L   T       F+N     + +            KA +    S H +R   AT   D
Sbjct: 198 KQLAEKTEEQSHMVFLNAKGTPLTSRGVRYVLNELIKKASLTMRISPHMLRHTFATHMLD 257

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            GA    +    G + +   + YT    + RL
Sbjct: 258 EGADLRTVQELLGHENLSTTQIYTH-VSKERL 288


>gi|313676501|ref|YP_004054497.1| integrase family protein [Marivirga tractuosa DSM 4126]
 gi|312943199|gb|ADR22389.1| integrase family protein [Marivirga tractuosa DSM 4126]
          Length = 293

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 48/275 (17%), Positives = 101/275 (36%), Gaps = 27/275 (9%)

Query: 76  SEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSG---VESRK 127
             + K   +    + ++ +S+++  DQ  +   D     D  K   +HIRS    +    
Sbjct: 3   DTFFKYLQFEKRYSSHTLVSYQNDLDQFSKYLEDQFQTCDLLKAEHRHIRSWVVNLMQDG 62

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
             P S  + + ++R  +K+A+ +E +  NP   ++  K   E  +   +++M    S   
Sbjct: 63  VKPRSINRKIIALRSFYKFAISREAIHQNPTQKIKALKSAKELPQFVQEKEMDNLLSHIV 122

Query: 188 -----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGF 241
                EG++  L  E L  +G+R ++              +I+   K      V      
Sbjct: 123 FPEDFEGNRDALIMELLYGTGMRLAELIGLKEDDFNRQAGTIRILGKGNKERVVPFHLEI 182

Query: 242 MKLLAM---------TPIGKETFFINNDKQ---KMNATQFSIWFKAKATKAGVNKSAHGV 289
            + L           +  G+    ++N+      M   + +  +  + T     +S H +
Sbjct: 183 GRRLDKYIFHKKELFSHNGQSPLIVSNNGSKAYPMLINRITKKYLDQVTTIS-KRSPHVL 241

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           R   AT   + GA  + +    G  ++   + YT 
Sbjct: 242 RHTFATHLLNKGADLNAVKDMLGHSSLAATQVYTH 276


>gi|254427826|ref|ZP_05041533.1| tyrosine recombinase XerC [Alcanivorax sp. DG881]
 gi|196193995|gb|EDX88954.1| tyrosine recombinase XerC [Alcanivorax sp. DG881]
          Length = 307

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 35/260 (13%), Positives = 91/260 (35%), Gaps = 20/260 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR---SGVESRKHTPSSAIQFLTSMR 141
             L+ ++  S++    +  +  G   +  +T   IR   + +  +  +  +  + L+++R
Sbjct: 23  RRLSPHTVSSYQRDLVEARKVLGTQPWDTLTVHDIRSLAATLHRKGKSGKTIQRMLSTLR 82

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-----WSEGSQPRLAF 196
             F++ +R+     NP + +  PK      +    + +                + +   
Sbjct: 83  TFFRYLMREGLARDNPAMDIRAPKSGKRLPKALDADQVSHLLDAGTHSSEPLALRDQAMM 142

Query: 197 EFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKT-------GTIITVELPDGFMKLLAM 247
           E L   GLR ++     +    L++    +  +         G      +         +
Sbjct: 143 ELLYACGLRLAELLSLNLDSIDLRDGQLLVTGKGNKTRQLPVGKPALTAVRRWLKVRPLL 202

Query: 248 TPIGKET-FFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATA 304
              G++T  FI+ + ++++ +      K  A + G++     H +R   AT   ++    
Sbjct: 203 IKSGEQTALFISKNGRRLSPSSVQQRLKRHALERGLDDHLHPHKLRHSFATHLLESSGDL 262

Query: 305 HELMATYGWKTVDQAETYTK 324
             +    G   +   + YT 
Sbjct: 263 RAVQELLGHADLATTQVYTH 282


>gi|71280796|ref|YP_269073.1| phage integrase family site specific recombinase [Colwellia
           psychrerythraea 34H]
 gi|71146536|gb|AAZ27009.1| site-specific recombinase, phage integrase family [Colwellia
           psychrerythraea 34H]
          Length = 334

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 62/332 (18%), Positives = 114/332 (34%), Gaps = 33/332 (9%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
           +PP V K      K+ Y F+   G +IRL              A +      E   +   
Sbjct: 12  MPPRVYKT-----KVAYVFQPKSGGKIRLCGLD---------VAKSLVWMLYEKECASLD 57

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
              ++  L  ++  SA +   A  ++  +  Y   ++   G  D  K+  KH+R  ++ +
Sbjct: 58  NFNSVASLFEKFFLSASFIDKAPRTQKDYLGYKKDLLIAFGKMDINKVEPKHVRMFMDKK 117

Query: 127 --KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
             K   S A +  ++++ +F WA  +  + +NPC+ V++   K       T  + Q   +
Sbjct: 118 AVKSGISQANRHKSALQSIFSWAYERGKIKVNPCVGVKKFTEKARDRYV-TDVEYQALLN 176

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
                     A E       R  D  R   + L  +   IK  KTG     E      K 
Sbjct: 177 HACP--VIYAAAEISYLCMARRGDVERLRKEQLIADGIYIKQGKTGKKQIKEWSPRLKKA 234

Query: 245 LAMT----PIGKETFFINN-DKQKMNATQFSIWF----KAKATKAG--VNKSAHGVRKFS 293
           ++      P     + I+  +        F   +    +      G  ++ + H + K  
Sbjct: 235 ISHANKVNPSISSMYVIHQFNGSGYGTNGFRDRWVSTMERARKSTGYLMDFTFHDL-KAK 293

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKG 325
                + G    +  A  G  T+ Q   Y + 
Sbjct: 294 GISDFE-GNLEEKRNAA-GHTTIKQTADYDRK 323


>gi|62184944|ref|YP_219729.1| site-specific tyrosine recombinase XerC [Chlamydophila abortus
           S26/3]
 gi|81312884|sp|Q5L6G3|XERC_CHLAB RecName: Full=Tyrosine recombinase xerC
 gi|62148011|emb|CAH63762.1| putative integrase/recombinase [Chlamydophila abortus S26/3]
          Length = 312

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 38/243 (15%), Positives = 88/243 (36%), Gaps = 23/243 (9%)

Query: 103 IRKSGDFDYRKITTKHIR----SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158
            R+  +  +  +T   +R      ++  K    +  + L++++   ++ V+Q  +  +P 
Sbjct: 55  ERQEAELPFSLLTKDTVRLYILKLMQENKAK-RTIKRRLSAIKSFSQYCVKQRILPDDPT 113

Query: 159 LSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRA-G 213
            +++ P+   E   P T E ++   +        G + R   E    SGLR S+      
Sbjct: 114 ETIQGPRLPKELPSPITYEQVEILMATPDLSKYTGLRDRCLLELFYSSGLRISEIVAINH 173

Query: 214 VQ-HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI---------GKETFFINNDKQK 263
                 +++  I+  K      V +     + L                +  F+N   ++
Sbjct: 174 WDIDFTSHLIRIR-GKGKKERLVPITPHAAQWLQHYLTHPARTSIEKDAQAIFLNRFGKR 232

Query: 264 MNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
           +        F+    ++G+  + + H +R   AT   + G     + A  G  +++    
Sbjct: 233 LTTRSIDRKFQKYLRQSGLSGHITPHTIRHTIATHWLENGMDLKTIQALLGHSSLETTTI 292

Query: 322 YTK 324
           YT 
Sbjct: 293 YTH 295


>gi|83951798|ref|ZP_00960530.1| tyrosine recombinase XerD [Roseovarius nubinhibens ISM]
 gi|83836804|gb|EAP76101.1| tyrosine recombinase XerD [Roseovarius nubinhibens ISM]
          Length = 314

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 46/269 (17%), Positives = 88/269 (32%), Gaps = 32/269 (11%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDY--RKITTKHIRSGV---ESRKHTPSSAIQFLTSMRV 142
           A N+ +++        +   +       +    + + +   +++    S+  + L++++ 
Sbjct: 21  AKNTLMAYARDLSDFSQWVENKSLSLATLQQSDVEAYLVHCDAQGLAQSTRARRLSAVKQ 80

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ---QFKSFWSEGSQPRLA---- 195
           L+++A  +     NP L ++ P R     +  ++ ++    Q       G   RL     
Sbjct: 81  LYRFAFDERLRGDNPALRIKGPGRSGRLPKTLSEAEVDGLLQAARSHGRGPADRLRNTCL 140

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKLLA-------- 246
            E L  +GLR ++     V   + N    +   K G    V L       L         
Sbjct: 141 MELLYATGLRVTELVSLPVAATRGNPELLMVRGKGGKERMVPLSPPAQVALRDWLAHRDA 200

Query: 247 --------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSAT 295
                     P     F   +    +   +F +  K  A  AGV     + H +R   AT
Sbjct: 201 MEETARQKGLPASPFLFPSRSKDGHLTRHRFYLLIKDLAVAAGVSPSKVTPHTLRHAFAT 260

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTK 324
                GA    +    G   V   E YT 
Sbjct: 261 HLLANGADLRAIQTLLGHADVATTEIYTH 289


>gi|160915175|ref|ZP_02077388.1| hypothetical protein EUBDOL_01183 [Eubacterium dolichum DSM 3991]
 gi|158432974|gb|EDP11263.1| hypothetical protein EUBDOL_01183 [Eubacterium dolichum DSM 3991]
          Length = 302

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 46/269 (17%), Positives = 90/269 (33%), Gaps = 27/269 (10%)

Query: 88  AVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHTP------SSAIQFLTS 139
               +   + +   I  ++ D   D  +I   +  + +  +          ++  + L+S
Sbjct: 23  KAAYQRDIQEFIMYIREQAIDSFEDVDRIVVMNYIAFLRDKGGKGYSGMKNTTIARKLSS 82

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLA 195
           +R  + +      +A NP +  + PK           ++++ F   +      G + R  
Sbjct: 83  LRSFYHYLNEYIGIANNPFVYFKTPKIAKRIPEFLFYDEIEIFLESFDLNSMQGLRDRTM 142

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLL-------- 245
           FE +   GLR S++     + +   +NI  I   K      V   D   +LL        
Sbjct: 143 FELMYACGLRVSEAVSLRTRDVDFADNILHIH-GKGDKERLVPFYDLAKELLVSYIKDVR 201

Query: 246 AMTPIGKET-FFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGA 302
            +     ET  F+N   +K+              K  ++     H  R   AT   D GA
Sbjct: 202 DVWATSDETALFVNQRGKKLTTRGVQYLMNKAVEKCDLHVHVHPHMFRHSFATHLLDNGA 261

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRL 331
               +    G  ++   + Y     + RL
Sbjct: 262 DLRYVQELLGHSSLSTTQIYVH-VSKERL 289


>gi|126435536|ref|YP_001071227.1| site-specific tyrosine recombinase XerD [Mycobacterium sp. JLS]
 gi|126235336|gb|ABN98736.1| tyrosine recombinase XerD subunit [Mycobacterium sp. JLS]
          Length = 318

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 44/274 (16%), Positives = 92/274 (33%), Gaps = 35/274 (12%)

Query: 85  GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGV----------ESRKHTPS 131
             +A N+  S+     +        G  D  K+T   +   +           ++  +  
Sbjct: 26  RGVAANTLSSYRRDLRRYSEHLTGRGVEDLAKVTESDVSDFLVALRRGDPDTGAQALSAV 85

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF--------K 183
           SA + L ++R L ++A  +    ++   +V+ P       +  + +++           +
Sbjct: 86  SAARALIAVRGLHRFATAEGLTDVDVARAVKPPTPGRRLPKSLSIDEVLALLDGAGGDSE 145

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFM 242
           +      + R   E L  +G R S++    +  +  +    +   K G    V +    +
Sbjct: 146 ADGPLTLRNRALLELLYSTGARISEAVGLDIDDVDTHARSVLLRGKGGKQRLVPIGRPAV 205

Query: 243 KLL-----------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGV 289
             L           A    G    F+N    +++        +  A +AG+    S H +
Sbjct: 206 SALDAYLVRGRPDLARRGRGTPAIFLNARGGRLSRQSAWQVLQDAADRAGITSAVSPHTL 265

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           R   AT   D GA    +    G  +V   + YT
Sbjct: 266 RHSFATHLLDGGADVRVVQELLGHASVTTTQIYT 299


>gi|298253366|ref|ZP_06977158.1| site-specific recombinase XerD [Gardnerella vaginalis 5-1]
 gi|297532761|gb|EFH71647.1| site-specific recombinase XerD [Gardnerella vaginalis 5-1]
          Length = 322

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 56/285 (19%), Positives = 102/285 (35%), Gaps = 34/285 (11%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGV--ESRK 127
           LI +Y         L   ++ ++ S          + G  +  ++TT  +RS +  ESR 
Sbjct: 21  LIDDYIDYVRANKGLGERTQKAYASDILQCLAWCNRHGFNNISELTTDDLRSWMADESRS 80

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----- 182
           H  SS  + + ++R  F W    EY++ NP   +  PK K        +   +       
Sbjct: 81  HARSSLARKVVAVRGFFAWCQHVEYISGNPAEILMTPKIKNMLPSVLDEYQAESLMNNVD 140

Query: 183 ----------KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGT 231
                     K+  + G +     E L  +G+R  +     +Q +  +  +IK T K   
Sbjct: 141 SKANVSTSCPKNQKAVGLRNAAILELLYATGIRVGELTSLNIQDINFSSHTIKVTGKGNK 200

Query: 232 IITVELPDGFMKLLAMTPIGK-----------ETFFINNDKQKMNATQFSIWFKAKATKA 280
              V       K L+                 E  F+    ++++          +A  A
Sbjct: 201 QRVVPFGVPAYKALSAWISKDGREILLRNSVEEAVFLGTRGKRIDQRLVRQIVHDEAKSA 260

Query: 281 GV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            V + S H +R  +AT   + GA   E+    G  +++  + YT 
Sbjct: 261 HVPDISPHALRHSAATHMLNGGADLREVQELLGHSSLNTTQRYTH 305


>gi|262383756|ref|ZP_06076892.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_33B]
 gi|298375888|ref|ZP_06985844.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_19]
 gi|262294654|gb|EEY82586.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_33B]
 gi|298266925|gb|EFI08582.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_19]
          Length = 302

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 53/276 (19%), Positives = 103/276 (37%), Gaps = 25/276 (9%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS-----GDFDYRKITTKHIRSGV---E 124
           LI ++     +  + +  +  ++    DQ  R       G FD  +I +  +RS +    
Sbjct: 2   LIDDFLNYLRYERNYSNYTIGAYSKDLDQFQRYVREHREGVFDPGEIDSDFVRSWIVSLM 61

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
             K +P S  + L+S++  FK+ +++  V+ NP   V  PK K          +++    
Sbjct: 62  DEKLSPVSVNRKLSSLKSFFKFLMKRGIVSANPLRLVSGPKTKKPLPYFIKDSELEALLD 121

Query: 185 FWS-----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELP 238
                   EG + RL  E L  +G+R S+        +      +K T K      +   
Sbjct: 122 GDGFDEDFEGVRNRLVIEMLYDTGMRRSELIGIRNVDVDYEAMQVKVTGKRNKQRLIPFA 181

Query: 239 DGFMKLLAMTP--------IGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHG 288
           +G   L+               E FF+  +  +++        K + ++  +   +S H 
Sbjct: 182 EGLKNLMLAYTEVRDREVEAAGEWFFVRKNGNQLSTGIVYNIVKKQLSEIPMLAKRSPHV 241

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +R   AT   + GA  + +    G  ++     YT 
Sbjct: 242 LRHSFATSMLNNGAELNAVKDLLGHSSLASTSVYTH 277


>gi|206889353|ref|YP_002249196.1| tyrosine recombinase XerC [Thermodesulfovibrio yellowstonii DSM
           11347]
 gi|254799359|sp|B5YFZ8|XERC_THEYD RecName: Full=Tyrosine recombinase xerC
 gi|206741291|gb|ACI20348.1| tyrosine recombinase XerC [Thermodesulfovibrio yellowstonii DSM
           11347]
          Length = 301

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 47/259 (18%), Positives = 94/259 (36%), Gaps = 22/259 (8%)

Query: 88  AVNSRISFESYFDQII--RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFK 145
           + ++  ++++  ++     K        I  +   S    +  + ++  + L+++R  F 
Sbjct: 22  SSHTLRAYKNDLEEFFNFAKVEPEKVEPIVIRGFISEQILKGKSKTTVARKLSTLRSFFS 81

Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG----SQPRLAFEFLLY 201
           +   + ++ INP   V   K K    +  T +D  +     SE      + +   E    
Sbjct: 82  YLYSEGFIKINPARVVSSVKIKRALPKFLTVDDAFKLVEAPSEDKFTVQRDKAILELFYS 141

Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-----ELPDGFMKLLAMTPI------ 250
           SG+R S+ C   ++ L      IK +  G    +     +  +   K LA+  I      
Sbjct: 142 SGIRVSELCGLNLEDLDLKEGLIKVRGKGKKERIVPVGQKAKEALKKYLAIRQILRIKKK 201

Query: 251 ---GKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAH 305
               +   FINN  Q+++  Q     +  A   GV      H +R   A+     GA   
Sbjct: 202 LSLDETPLFINNRGQRISDRQVRRIVEKYAKFIGVLEKIGPHTLRHTFASHLLMEGADLR 261

Query: 306 ELMATYGWKTVDQAETYTK 324
            +    G  ++   + YT 
Sbjct: 262 VIQELLGHASLSTTQIYTH 280


>gi|329929830|ref|ZP_08283506.1| phage integrase, N-terminal SAM domain protein [Paenibacillus sp.
           HGF5]
 gi|328935808|gb|EGG32269.1| phage integrase, N-terminal SAM domain protein [Paenibacillus sp.
           HGF5]
          Length = 294

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 41/270 (15%), Positives = 96/270 (35%), Gaps = 25/270 (9%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH------IRSGVESRKHT 129
            +Y +      L+ ++  S+ +     +  + + +       +          +  +   
Sbjct: 9   VQYLE--DEKGLSRSTIASYRADLQGFLAFAAEREVTHPREVNRTLLGLYVGRLRQQGKA 66

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            SS ++   S+R  F++ VRQ  +  +P   ++ PK + +  +  T E + +  S    G
Sbjct: 67  ASSLLRCTASLRSFFQYLVRQAVIVQDPTQLLDNPKPERKPPKSLTVEQVDKLLSAPDSG 126

Query: 190 S----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-KTGTIITVELPDGFMKL 244
           +    + +   E L  SG++ S+     V  +Q  +  ++     G    + +     + 
Sbjct: 127 TPQGARDKAMLELLYASGIKVSELVNLSVHDIQLEMRFLRCAVSGGKERILPITPIAAES 186

Query: 245 LA----------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292
           +A          M   G++  F+N+   ++    F    K     A +++  + H +R  
Sbjct: 187 VALYVRDMRDKLMRDAGEDALFLNSLGTRLTRQGFWKIIKKYGKLADIDEDITPHTLRHS 246

Query: 293 SATISADAGATAHELMATYGWKTVDQAETY 322
            A      GA    +    G   +     Y
Sbjct: 247 FAMHLLGNGADLRSVQEMLGHSALSTTGMY 276


>gi|289523581|ref|ZP_06440435.1| integrase/recombinase XerD [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
 gi|289503273|gb|EFD24437.1| integrase/recombinase XerD [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
          Length = 297

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 50/262 (19%), Positives = 94/262 (35%), Gaps = 15/262 (5%)

Query: 77  EYRK--SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---TPS 131
           EY K  S    +  +N  +    + D +I + G  +  KI   HIR+ +        + S
Sbjct: 14  EYLKYVSGRTDNTVINYAVDLSQFVDYVISQ-GVEEVEKIEQAHIRAFLRELAAYGYSKS 72

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS- 190
           S ++ L+S+R    + ++   +  +P   V  PK      R    ED++        G  
Sbjct: 73  SVLRKLSSLRSWTNFLLQSGKLTSDPTKGVRGPKEPKRLPRALAYEDVKMMLENGPNGEF 132

Query: 191 --QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFMKLLAM 247
             + R   E L   GLR ++      + +      ++ +  G     V +     K L  
Sbjct: 133 EIRDRAILELLYGCGLRVAELVALDWEDVDIEERWLRVKGKGEKERLVPMGRHAQKALRE 192

Query: 248 TPIG----KETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGA 302
             +         F  +  +++            A + G+   S H +R   AT   + GA
Sbjct: 193 WQVFLGKLSGPLFPGDGCERIAVRTVHRVVSRAAKRVGLAGVSPHMLRHSFATHMLEGGA 252

Query: 303 TAHELMATYGWKTVDQAETYTK 324
           +   L    G +++   + Y K
Sbjct: 253 SLRVLQELLGHQSLVTTQRYLK 274


>gi|183982521|ref|YP_001850812.1| integrase/recombinase, XerD [Mycobacterium marinum M]
 gi|183175847|gb|ACC40957.1| integrase/recombinase, XerD [Mycobacterium marinum M]
          Length = 313

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 46/274 (16%), Positives = 87/274 (31%), Gaps = 35/274 (12%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH----IRSGVESRKHTPSS-------- 132
             +A N+  S+     +  +   D     +            V  R+  P S        
Sbjct: 21  RGVAANTLSSYRRDLRRYSKHLEDRGITDLAKVGEDDVSEFLVALRRGDPESGVLGLSAV 80

Query: 133 -AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----- 186
            A + L ++R L ++A  +   A++   +V  P       +  T +++            
Sbjct: 81  SAARALIAVRGLHRFAAAEGLAALDVARAVRPPTPGRRLPKSLTIDEVLALLEGAGGDNP 140

Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFM 242
                  + R   E L  +G R S++    V  +       +   K G    V +    +
Sbjct: 141 ADGPLTLRNRALLELLYSTGSRISEAVGLDVDDIDTQARTVLLQGKGGKQRLVPVGRPAV 200

Query: 243 KLL-----------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGV 289
           + L           A    G    F+N    +++        +  A +AG+    S H +
Sbjct: 201 QALDAYLVRGRPELARRGRGTPAIFLNARGGRLSRQSAWQVLQDAAERAGITSGVSPHML 260

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           R   AT   + GA    +    G  +V   + YT
Sbjct: 261 RHSFATHLLEGGADVRVVQELLGHASVTTTQIYT 294


>gi|239993652|ref|ZP_04714176.1| tyrosine recombinase [Alteromonas macleodii ATCC 27126]
          Length = 306

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 45/262 (17%), Positives = 101/262 (38%), Gaps = 23/262 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK---HTPSSAIQFLTSMR 141
             L++++  +++    ++ +  G +++  +T   I+  +   K   H+P S    L+++R
Sbjct: 26  RGLSLHTIKNYQRQLTEVAKLLGLYEWSGLTPSDIKRVMADAKMSGHSPRSIALRLSALR 85

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS------EGSQPR-- 193
              ++ +  + +  NP   ++ PK+     +  + ++MQQ  +         EG Q R  
Sbjct: 86  TFCQYLIDHQQLFSNPVEGIQAPKQGKPLPKQLSVDEMQQLLNASPRSSDDDEGMQLRDV 145

Query: 194 LAFEFLLYSGLRCSDSCRAGVQH-LQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252
             FE L   GLR S+     +   L++    +   K      + L     K L      +
Sbjct: 146 AMFELLYGCGLRLSELTGLNLADCLKDGTVKVM-GKGSKQRILPLGRHAQKALNAWLKVR 204

Query: 253 ETF--------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGA 302
             +        F++  K +++  Q +      A++  +    S H +R   AT   ++  
Sbjct: 205 PAYASPYESAVFVSKRKTRISNRQVANRLDKMASEQSLSQKVSPHKLRHSFATHVLESSG 264

Query: 303 TAHELMATYGWKTVDQAETYTK 324
               +    G   +   + YT 
Sbjct: 265 DLRAVQELLGHANLSTTQVYTH 286


>gi|322806579|emb|CBZ04148.1| integrase/recombinase (XerC/CodV family) [Clostridium botulinum
           H04402 065]
          Length = 330

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 47/258 (18%), Positives = 86/258 (33%), Gaps = 13/258 (5%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQ 135
           Y  +     L+  +  ++E     I           I T  +R  +  R      +S   
Sbjct: 61  YLATKKLDGLSRKTLKNYECNL-LIFADHLRKPLSTINTMDLRMFLTVRCKSMKATSVNG 119

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195
            ++ ++  F W   +EY+  NP   +++ K      +P T+E+++  +       +    
Sbjct: 120 QISILKSFFGWLHEEEYIPKNPAKKLKQTKEPKRVRKPLTEEEIELLRQSCKT-DREEAL 178

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELP----DGFMKLLAMTPI 250
            EFL+ +G R S+        +  +  S     K      V           K L     
Sbjct: 179 IEFLISTGCRLSEIVEVNKDDINWHEMSLFVVGKGDKERKVYFSTKAKILLKKYLLTRAD 238

Query: 251 GKETFFINNDKQKMNATQFSIW--FKAKATKAGVNKS--AHGVRKFSATISADAGATAHE 306
             E  F+ +          SI    K  A  AG+ KS   H  R   AT   ++G     
Sbjct: 239 NNEALFVTSRSPHNRLGGRSIQREIKKIANMAGIEKSIHPHLFRHSFATYKINSGMPMPI 298

Query: 307 LMATYGWKTVDQAETYTK 324
           +    G ++    + Y +
Sbjct: 299 IQHLMGHESPATTQIYAQ 316


>gi|323491144|ref|ZP_08096332.1| phage integrase family protein [Vibrio brasiliensis LMG 20546]
 gi|323314609|gb|EGA67685.1| phage integrase family protein [Vibrio brasiliensis LMG 20546]
          Length = 345

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 57/319 (17%), Positives = 117/319 (36%), Gaps = 17/319 (5%)

Query: 16  TRHGKIIYYFRK---GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
            R GK    +R      G+RI   +P + +    + + L         + +       + 
Sbjct: 6   VRKGKKKTTYRVQFMRDGQRISKSFPTKKS-AEKFAALLVVDDDFSHSMTNQTLNSFLVS 64

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE--SRKHTP 130
             I EY +      +++  R+S+           G     K+T + +++ +    ++  P
Sbjct: 65  DAIDEYLQQYKGKDVSLAQRLSY------WSAAFGSIAVGKVTRQKVKAELRGLLKRCAP 118

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           S+  ++  ++  L+++ + +  +  NP   +          R  + E++++  S     S
Sbjct: 119 STVNRYKAALGTLYRYLLHEYDIDHNPTKGIPLLTENNARTRYLSDEEIERLLSACRHSS 178

Query: 191 QPRLAFEFLLY--SGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
             +L    LL   +G R S+      +  +L+     + T K G    + L    +  L 
Sbjct: 179 WNQLFLLVLLAITTGARRSELLTCRWESINLKTRTIHLSTTKNGEQRLLTLTHEAVTELM 238

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAH 305
                    F   +   M    F   +K   TKA ++    H +R   A+I A  GA+  
Sbjct: 239 KYRRSSGYLFPCPELPAMYFKNFDYHWKEALTKAHIHSFRFHDLRHTCASILAMNGASLL 298

Query: 306 ELMATYGWKTVDQAETYTK 324
           E+    G KT+   + Y  
Sbjct: 299 EIKQVLGHKTIAMTQRYAH 317


>gi|296133056|ref|YP_003640303.1| tyrosine recombinase XerC [Thermincola sp. JR]
 gi|296031634|gb|ADG82402.1| tyrosine recombinase XerC [Thermincola potens JR]
          Length = 302

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 48/270 (17%), Positives = 95/270 (35%), Gaps = 30/270 (11%)

Query: 85  GSLAVNSRISFESYF----DQIIRKSGDFD-------YRKITTKHIRSGVESRKHTPSSA 133
            + +  +  S+++      D I  +               +  +   + ++ R  + S+ 
Sbjct: 16  KNASEKTLQSYQTDLFQMVDFISAEINITPENLQPDRVDHLVIRKFLAELQRRGLSRSTI 75

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKSFWSEG 189
            + L +MR  F++  R+E +  NP + V  PK +    +   ++D+    +  +     G
Sbjct: 76  ARKLAAMRTFFRFLCREEVITRNPLIEVATPKVEKRLPQFLYQDDIRNLIEAPERNTPRG 135

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-------------E 236
            + R   E L  SG+R S+     +  +  N   ++    G    V              
Sbjct: 136 LRDRAILETLYASGIRVSELVNLDMTDIDLNTGYVRVMGKGAKERVVPLGQFAINALKAY 195

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSA 294
           L  G  +L   +    E  F+N   Q+++             K  + +  S H +R   A
Sbjct: 196 LTHGRTRLACRSKEPSEAVFLNKAGQRISVRSIRDIVNKYVRKISIRQRVSPHIIRHSFA 255

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324
           T   DAGA    +    G   +   + YT 
Sbjct: 256 THLLDAGADLRTVQELLGHVKMSTTQIYTH 285


>gi|328948451|ref|YP_004365788.1| Tyrosine recombinase xerC [Treponema succinifaciens DSM 2489]
 gi|328448775|gb|AEB14491.1| Tyrosine recombinase xerC [Treponema succinifaciens DSM 2489]
          Length = 297

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 44/257 (17%), Positives = 88/257 (34%), Gaps = 21/257 (8%)

Query: 99  FDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS---SAIQFLTSMRVLFKWAVRQEYVAI 155
            D + +   +    K+T + +      RK +     +  + L+++R+   + VR++    
Sbjct: 36  LDYLEKN--ETPLEKVTVQSLLYYTAFRKTSGRKEITLAKDLSALRIFGSFLVRKKIWIE 93

Query: 156 NPCLSVERPKRKTEGIRPWTKEDMQQFKS----FWSEGSQPRLAFEFLLYSGLRCSDSCR 211
           N    + +PK      +    E +    +        G + R  +E +   GLR S++C 
Sbjct: 94  NFAHEIGKPKVSRALPKVLEVEQVDSLLASIDVKKPLGIRDRALYEVIYSCGLRISEACS 153

Query: 212 AGVQHLQ-NNIFSIKTQKTGTIITVELPD----GFMKLL---AMTPIGKETF---FINND 260
             + ++  +    +   K      V   +       K +       +G       F+N+ 
Sbjct: 154 LLIANVHFDENLILVRGKGSKERLVPFGEDAAFWLKKWIFEIRPGFVGSRIIPEVFVNSK 213

Query: 261 KQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
              ++       FKA   K G+    H +R   AT     GA    +    G   +   +
Sbjct: 214 GNPISRKGIWKNFKAMGKKTGIEAKVHTLRHSFATHLLSGGADLRSVQELLGHSDLSTTQ 273

Query: 321 TYTKGADRIRLGIKNSR 337
            YT   D  RL   +  
Sbjct: 274 IYTHIDD-SRLEESHRD 289


>gi|273810420|ref|YP_003344891.1| integrase [Xylella phage Xfas53]
 gi|257097795|gb|ACV41101.1| integrase [Xylella phage Xfas53]
          Length = 339

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 61/332 (18%), Positives = 111/332 (33%), Gaps = 26/332 (7%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
           +P F  + + + G + YY+  G   R   P          Y  A+     + E+      
Sbjct: 11  IPRFRVRPQ-KSGVVYYYYDHGGKPRKETPLG------RDYGLAI-KRWAELEHAQITPA 62

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVE 124
              T + +   YR      + A N++         +++   D    +  I   +IR  ++
Sbjct: 63  IAVTFRHVAERYRAEVI-PTKAYNTQRVEHRCLAPLLKFFDDPPAPFEAIKPVNIRQYLD 121

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVA-INPCLSVERPKRKTEGIRPWTKEDMQQFK 183
            R      A + ++    L+ WA  +      NPC  + R K     +     ED     
Sbjct: 122 WRTSKV-IANREVSVFSHLWNWARSKGITDLPNPCGGIRRNKATGRNVYI---EDTTYHA 177

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
            + +     R A +    +G R SD      +H+ N    I   KTG  + + +      
Sbjct: 178 VYQAADQTLRDAMDLAYLTGQRVSDVVSMDERHIVNGALEICQAKTGAKLAITVTGELAV 237

Query: 244 LLAMTPIGKE-------TFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFS 293
           L+      K           ++ +  +++ T     F      AG+ K       +R  +
Sbjct: 238 LIKRIFDRKRGMKLRSTRLIVDAEGLELSRTGLRYRFDKARAAAGIAKEVFQFRDLRAKA 297

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKG 325
           AT  AD      +  A  G  +V   E Y + 
Sbjct: 298 ATDKADLAGDIRQAQAQLGHASVTMTEHYVRK 329


>gi|329942671|ref|ZP_08291450.1| phage integrase, N-terminal SAM-like domain protein [Chlamydophila
           psittaci Cal10]
 gi|313847852|emb|CBY16846.1| putative integrase/recombinase [Chlamydophila psittaci RD1]
 gi|325506606|gb|ADZ18244.1| site-specific tyrosine recombinase [Chlamydophila psittaci 6BC]
 gi|328814931|gb|EGF84920.1| phage integrase, N-terminal SAM-like domain protein [Chlamydophila
           psittaci Cal10]
 gi|328914512|gb|AEB55345.1| site-specific recombinase, phage integrase family [Chlamydophila
           psittaci 6BC]
          Length = 312

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 42/243 (17%), Positives = 92/243 (37%), Gaps = 23/243 (9%)

Query: 103 IRKSGDFDYRKITTKHIR----SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158
            R+  +  +  +T   +R      ++  K    +  + L++++   ++ V+   +  +P 
Sbjct: 55  ERQEAELPFSLLTKDAVRLYILKLMQENKAK-RTIKRRLSAIKSFSQYCVKHRILPEDPT 113

Query: 159 LSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRA-G 213
            +++ P+   E   P T E ++   +        G + R   E    SGLR S+      
Sbjct: 114 ETIQGPRLPKELPSPITYEQVEILMATPDLSKYTGFRDRCLLELFYSSGLRISEIVAINH 173

Query: 214 VQ-HLQNNIFSIKTQKTGTIITVELPDGFMKLL-------AMTPIGKET--FFINNDKQK 263
                 +++  I+  K      V +     + L       A T I K++   F+N   ++
Sbjct: 174 WDIDFTSHLIRIR-GKGKKERLVPMTPHAAQWLQQYLTHPARTGIEKDSQAIFLNRFGKR 232

Query: 264 MNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
           +        F+    ++G+  N + H +R   AT   + G     + A  G  +++    
Sbjct: 233 LTTRSIDRKFQKYLRQSGLSGNITPHTIRHTIATHWLENGMDLKTIQALLGHSSLETTTI 292

Query: 322 YTK 324
           YT 
Sbjct: 293 YTH 295


>gi|255014711|ref|ZP_05286837.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_7]
          Length = 302

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 52/276 (18%), Positives = 103/276 (37%), Gaps = 25/276 (9%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS-----GDFDYRKITTKHIRSGV---E 124
           LI ++     +  + +  +  ++    DQ  R       G F+  +I +  +RS +    
Sbjct: 2   LIDDFLNYLRYERNYSNYTIGAYSKDLDQFQRYVREHREGVFNPGEIDSDFVRSWIVSLM 61

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
             K +P S  + L+S++  FK+ +++  V+ NP   V  PK K          +++    
Sbjct: 62  DEKLSPVSVNRKLSSLKSFFKFLMKRGIVSANPLRLVSGPKTKKPLPYFIKDSELEALLD 121

Query: 185 FWS-----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELP 238
                   EG + RL  E L  +G+R S+        +      +K T K      +   
Sbjct: 122 GDGFDEDFEGVRNRLVIEMLYDTGMRRSELIGIRNVDVDYEAMQVKVTGKRNKQRLIPFA 181

Query: 239 DGFMKLLAMTP--------IGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHG 288
           +G   L+               E FF+  +  +++        K + ++  +   +S H 
Sbjct: 182 EGLKNLMLAYTEVRDREVEAAGEWFFVRKNGNQLSTGIVYNIVKKQLSEIPMLAKRSPHV 241

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +R   AT   + GA  + +    G  ++     YT 
Sbjct: 242 LRHSFATSMLNNGAELNTVKDLLGHSSLASTSVYTH 277


>gi|56420265|ref|YP_147583.1| integrase/recombinase [Geobacillus kaustophilus HTA426]
 gi|56380107|dbj|BAD76015.1| integrase/recombinase [Geobacillus kaustophilus HTA426]
          Length = 301

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 43/295 (14%), Positives = 109/295 (36%), Gaps = 30/295 (10%)

Query: 71  LKWLISEYRKSAH-WGSLAVNSRISFE---SYFDQIIRKSG-DFDYRKITTKHIRSGVES 125
            +  I E+        + ++N+   +      F+  + + G       IT  H+R  ++ 
Sbjct: 3   FRQAIDEFVLYLQIEKNYSLNTVDGYAYDLRCFENFLIQHGYSVQLHDITKTHVRRFIQH 62

Query: 126 R----KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
           +       P +  + ++ ++   K+ V++  +  +  + ++ PK  ++     +  ++++
Sbjct: 63  QITKENVKPRTIYRRISCLKSFSKYCVKENLIDSDFMIGIDTPKTDSKLPTYMSLSELRK 122

Query: 182 FKSFWSE-----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITV 235
              F  +       +  L F+ L  +G+R S+      + +  +  +I+   K      +
Sbjct: 123 LFHFLEQDNSRMAMRNHLLFKLLATTGMRRSEIVELTWEQIDLSNNTIRIYGKGKKERLL 182

Query: 236 ELPDGFMKLLAM--------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---K 284
            L    + L+               +  F+N + +K+N       FK    KAG+     
Sbjct: 183 PLHPMVVPLIKSYMESLEEYQLHPSQPVFLNKNGKKLNPRGLHKIFKEILQKAGLPPQRF 242

Query: 285 SAHGVRKFSATISADAGA---TAHELMATYGWKTVDQAETYTK-GADRIRLGIKN 335
           S H +R   AT+             +    G +++   + YT    ++ +  I+ 
Sbjct: 243 SLHHLRHTFATLLIQENKENVDLRTVQELLGHESLVTTQVYTHVDFEQKKKAIET 297


>gi|302035678|ref|YP_003796000.1| phage integrase [Candidatus Nitrospira defluvii]
 gi|300603742|emb|CBK40074.1| Phage integrase [Candidatus Nitrospira defluvii]
          Length = 373

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 64/322 (19%), Positives = 114/322 (35%), Gaps = 19/322 (5%)

Query: 16  TRHGKIIYYFRKGHGRRIRLPYPHES--TFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
            + G I +      G+RIR      S      A M+ +     + +Y     ++  T   
Sbjct: 4   VKRGNIWWMNIVFQGKRIR-RSTGSSNRALADAIMAKVKVQLIEGQYFERAEEQSRTFAE 62

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT---P 130
           L+  + +      + + SR + +++  +     GD    +IT K I      R  T   P
Sbjct: 63  LMDRFERE---HLVKLASRQTGQAFLKRFRAFFGDRTLAEITPKLIVEYKSRRSATGVKP 119

Query: 131 SSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
           +S  + LT +R  F  A R+ E+   NP   V   K  T+  R   +++  +        
Sbjct: 120 ASINRELTCLRKAFSLAKREWEWCRDNPVSRVSLEKGATKRDRWLMEDEEARLLDACPSW 179

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAM 247
            +  + F   L+SG+R  +        +       ++   K     TV L    M LL  
Sbjct: 180 LRELVVF--ALHSGMRLGEILSLTWNGVDLFRRTATVFESKNEERRTVPLNQTVMALLTE 237

Query: 248 TP----IGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGA 302
                 I     F +    +++        +    KAG+ N   H +R   AT    AG 
Sbjct: 238 KAKVRHIKTALVFPSLAGTRLDPNHLRRALRPAMAKAGIVNCHFHDLRHTFATRLVQAGV 297

Query: 303 TAHELMATYGWKTVDQAETYTK 324
             +++    G K+    + Y  
Sbjct: 298 DLYKVQRLLGHKSPLMTQRYAH 319


>gi|330444332|ref|YP_004377318.1| site-specific recombinase, phage integrase family [Chlamydophila
           pecorum E58]
 gi|328807442|gb|AEB41615.1| site-specific recombinase, phage integrase family [Chlamydophila
           pecorum E58]
          Length = 312

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 40/288 (13%), Positives = 97/288 (33%), Gaps = 40/288 (13%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSG---------------------DFDYRKIT 115
            +  S    S+++++  ++   F +                           D     +T
Sbjct: 7   SFLDSLKAKSVSLHTLRNYSIDFSKFKEFIETHKQLPTTPKITLHMKFQETSDLPLSLLT 66

Query: 116 TKHIRSGVE---SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
              IR  +     +  +  +  + L++++   ++ ++ + +  +P  +++ PK   E   
Sbjct: 67  KDLIRLYISYLIEQGKSKRTIKRRLSTLKSFSRYCLKMQLLFEDPTENIQGPKLPKELPS 126

Query: 173 PWTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-Q 227
           P + E ++   +        G + R   E    SGLR S+      Q +      I+   
Sbjct: 127 PISYEQVEILMTMPDVSKYTGLRDRCLLELFYSSGLRLSEITAINRQDIDFEAALIRIFG 186

Query: 228 KTGTIITVELPDGFMKLLAM---------TPIGKETFFINNDKQKMNATQFSIWFKAKAT 278
           K      + +    ++ L                + FF+N    +++       F+    
Sbjct: 187 KGKKERVLPVTPCAIRWLHHYLYHSERMSIQKDTQAFFLNRFGTRISPRSIDRKFQHYLQ 246

Query: 279 KAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            +G+    + H +R   AT   + G     + A  G  +++    YT+
Sbjct: 247 LSGLTGNITPHTIRHTIATHWLENGMDLKTIQALLGHSSLETTTIYTQ 294


>gi|307132969|ref|YP_003884985.1| site-specific tyrosine recombinase [Dickeya dadantii 3937]
 gi|306530498|gb|ADN00429.1| site-specific tyrosine recombinase [Dickeya dadantii 3937]
          Length = 302

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 44/259 (16%), Positives = 89/259 (34%), Gaps = 19/259 (7%)

Query: 85  GSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFLT 138
             L+  ++ S+      II     SG  D++ +    +R+ V   K      +S  Q L+
Sbjct: 22  RQLSPLTQSSYAHQLQVIIDMLSASGIADWQALDAAGVRAVVARGKRDGLNAASLAQRLS 81

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLA 195
           ++R    W V +  +  NP   V  PK      +    ++M +            + R  
Sbjct: 82  ALRSFLDWLVGRGELKANPARGVPAPKAGRHLPKNMDVDEMSRLLDIDLSDPLAVRDRAM 141

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI--------ITVELPDGFMKLLAM 247
            E +  +GLR ++       H+  +   +     G+           V     ++ +  +
Sbjct: 142 LEVMYGAGLRLAELVGLDCGHVDLDSGEVWVMGKGSKERKLPIGATAVTWLRNWLAIRDI 201

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAH 305
                +  FI++  ++++       F     K GVN     H +R   AT   ++     
Sbjct: 202 YAPEDDAIFISSLGKRISMRNVQKRFAEWGVKQGVNSHVHPHKLRHSFATHMLESSGDLR 261

Query: 306 ELMATYGWKTVDQAETYTK 324
            +    G   +   + YT 
Sbjct: 262 AVQELLGHANLSTTQIYTH 280


>gi|265767465|ref|ZP_06095131.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|263252770|gb|EEZ24282.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
          Length = 271

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 84/225 (37%), Gaps = 20/225 (8%)

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR--PWTKEDMQQFKSFWSEGS 190
           A       + + ++A+  + +  +PC  V   K     +R    + E++Q   +   E  
Sbjct: 52  AKSIYQRFKKVIRYAIEHDVILKDPCKEV-ICKVDDPMLRKDVLSLEEIQSLINCHYENE 110

Query: 191 QP--RLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTG-----TIITVELPDGF 241
            P  R AF F LY GLR  D      +++   N +   +  KT      + + + L DG 
Sbjct: 111 NPMVRRAFIFCLYFGLRFCDVKDLTYKNVDYSNKLLKFEQNKTKGHSSASGVVIPLNDGL 170

Query: 242 MKLLAMTPI-GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISA 298
           + ++   P  G +   I +          S   +    +AG++K  S H  R   A    
Sbjct: 171 LSIIGEAPANGNKDVLIFDL---PTYESCSKSLRRWVKRAGIDKHISWHCARHSFAVNIL 227

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343
           + GA    +    G   +   + YT+  D  +L  +    +  + 
Sbjct: 228 NNGANIKTIAGLLGHSGLKHTKKYTRAVD--KLKEEAINSLPELK 270


>gi|163843727|ref|YP_001628131.1| integrase/recombinase [Brucella suis ATCC 23445]
 gi|163674450|gb|ABY38561.1| Integrase/Recombinase [Brucella suis ATCC 23445]
          Length = 164

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 58/155 (37%), Gaps = 14/155 (9%)

Query: 205 RCSDSCRAGVQH-------LQNN-----IFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252
           R  D               L         F ++  KTG  + + +     ++L  TP   
Sbjct: 9   RRGDIAALRWDQRCSKTVFLDGEAKSVEGFELRQGKTGKRLLLPITPILSEVLEATPRQG 68

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMAT 310
           ET  +    +  +    +         A + K  + HG+RK    I A+ GA+  ++M T
Sbjct: 69  ETVLVTAYGEPFSPKSLTGRMADWTASAKLPKGFTLHGLRKTLGKILAEGGASTRQIMDT 128

Query: 311 YGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345
            G   +  AE YT+ A++ RL      R+  +  +
Sbjct: 129 LGHDDIAHAELYTREAEQARLATDGMSRVVRLKRN 163


>gi|110807498|ref|YP_691018.1| site-specific tyrosine recombinase XerC [Shigella flexneri 5 str.
           8401]
 gi|123342340|sp|Q0SZ02|XERC_SHIF8 RecName: Full=Tyrosine recombinase xerC
 gi|110617046|gb|ABF05713.1| tyrosine recombinase [Shigella flexneri 5 str. 8401]
          Length = 298

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 45/270 (16%), Positives = 95/270 (35%), Gaps = 20/270 (7%)

Query: 75  ISEYRKSAH-WGSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGVESRKHTP 130
           +  Y +       L+  + ++++   + II    ++G   +++     +R+     +H  
Sbjct: 8   VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDAAMVRNFAVRSRHKG 67

Query: 131 SSAIQF---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186
             A      L+++R  F W V Q  +  NP   V  PK      +    +DM +      
Sbjct: 68  LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDIDI 127

Query: 187 --SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT--------VE 236
                 + R   E +  +GLR S+     ++HL      +     G+           V 
Sbjct: 128 NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVA 187

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSA 294
             + ++ L  +     +  F++   ++++A      F     K G+N     H +R   A
Sbjct: 188 WIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFA 247

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324
           T   ++      +    G   +   + YT 
Sbjct: 248 THMLESSGDLRGVQELLGHANLSTTQIYTH 277


>gi|332039045|gb|EGI75469.1| tyrosine recombinase XerD subunit [Hylemonella gracilis ATCC 19624]
          Length = 322

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 49/292 (16%), Positives = 92/292 (31%), Gaps = 32/292 (10%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KH 128
           +  L  E   S +  +        +  +  +                 + +   +R  + 
Sbjct: 21  IDALWLEEGLSRNTLAAYRRDLALYARWLAEPREGKASQTLDASGEPDLNAYFAARHAQT 80

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF--- 185
             ++A + LT  +  F+WAVR+  +  +P L +   K+     +  ++  ++   +    
Sbjct: 81  RATTANRRLTVFKRYFRWAVRERRIQADPTLRLLSAKQPLRVPKTLSEAQVEALLAAPDA 140

Query: 186 -WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMK 243
               G + R   E +  SGLR S+     + ++  N   ++ T K      V   +    
Sbjct: 141 ATPLGLRDRAMLELMYASGLRVSELVGLKIFNVGLNEHVLRVTGKGSKERLVPFGEVAAD 200

Query: 244 LLAM------------------TPIGKETFFINNDKQK----MNATQFSIWFKAKATKAG 281
            +                         +  F+     +    M    F    K  A  AG
Sbjct: 201 WMRRYLHEARPELLGQVGASPRAAKQTDDLFVTLRGSRAGEAMTRVMFWSLVKKYAVIAG 260

Query: 282 V--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           V    S H +R   AT   + GA    +    G   +     YT  A R RL
Sbjct: 261 VTSPLSPHTLRHAFATHLLNHGADLRAVQMLLGHADISTTTIYTHVA-RERL 311


>gi|229117317|ref|ZP_04246695.1| Tyrosine recombinase xerC [Bacillus cereus Rock1-3]
 gi|228666217|gb|EEL21681.1| Tyrosine recombinase xerC [Bacillus cereus Rock1-3]
          Length = 302

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 43/272 (15%), Positives = 96/272 (35%), Gaps = 26/272 (9%)

Query: 85  GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLT 138
            + +  +  S+++  +  +    + G   +  +T   +R  +      K    S  + ++
Sbjct: 21  RNYSKYTIASYQNDLEHFVQFMEREGISSFLDVTYADVRLYLTTLHDEKLARKSVARKVS 80

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194
           S+R L+++ +R+ Y   NP      PK++    +    E++++           G + + 
Sbjct: 81  SLRSLYRFLMREGYRKDNPFALASLPKKELSIPKFLYAEELEELFEVSDMETPLGQRNQA 140

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE------------LPDGF 241
             E +  +G+R S+     +  +   + +I    K      +             + +G 
Sbjct: 141 LLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQRYIPFGSYAQDALITYMENGR 200

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
            +L   T       F+N     + +            KA +    S H +R   AT   D
Sbjct: 201 KQLANKTEEQSHMVFLNAKGTPLTSRGVRYVLNELIKKASLTMRISPHMLRHTFATHMLD 260

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            GA    +    G + +   + YT    + RL
Sbjct: 261 EGADLRTVQELLGHENLSTTQIYTH-VSKERL 291


>gi|309781409|ref|ZP_07676145.1| tyrosine recombinase XerD [Ralstonia sp. 5_7_47FAA]
 gi|308919822|gb|EFP65483.1| tyrosine recombinase XerD [Ralstonia sp. 5_7_47FAA]
          Length = 311

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 49/303 (16%), Positives = 95/303 (31%), Gaps = 26/303 (8%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD 110
              +    E  + P +    ++              LA N+  ++            + +
Sbjct: 2   RKAARKDAEAPSLPPQSADAIQRFCDALWLED---GLARNTLDAYRRDLTLYAHWLAERN 58

Query: 111 --YRKITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
               +     +     +R  +   SSA +  T  +  F+WA+R+  V+ +P   +   K+
Sbjct: 59  KSIAETEDDDLADYFAARHAESRASSANRRRTVFKRFFQWALREHVVSTDPSRLLPTAKQ 118

Query: 167 KTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222
                +  ++  ++            G + R   E +  SGLR S+        +  N  
Sbjct: 119 PPRFPKTLSETQVEALIDAPDVDTPLGLRDRAMIELMYASGLRVSEIVALKTVEVGLNEG 178

Query: 223 SIKTQKTGTIITVELP------DGFMKLLAMTPIG------KETFFINNDKQKMNATQFS 270
            ++           +P      D   + L             +  F+    + M    F 
Sbjct: 179 VVRVVGGKGGKDRLVPFGAEAGDWLRRYLRDGRTALLGERTADALFVTARGEGMTRQAFW 238

Query: 271 IWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
              K  A  A ++   S H +R   AT   + GA    +    G   +   + YT  A R
Sbjct: 239 YLIKRYALLADIHAPLSPHTLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVA-R 297

Query: 329 IRL 331
            RL
Sbjct: 298 ERL 300


>gi|323177195|gb|EFZ62785.1| phage integrase family protein [Escherichia coli 1180]
          Length = 456

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 43/258 (16%), Positives = 81/258 (31%), Gaps = 16/258 (6%)

Query: 79  RKSAHWGSLAVNSRI-SFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSSAIQF 136
           + S +       ++      +  +++   G      I  +HIR  ++ R   + + A   
Sbjct: 185 QNSPNTQQNEPETKQPEPLQHQKKLLAVFGKVPADSIKPEHIRRYMDKRGEQSKTQANHE 244

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196
            +SM  ++ W   + YV  NPC  V + K K       T ++ Q   S         +A 
Sbjct: 245 KSSMSRVYSWGYERGYVKGNPCAGVSKFKAKNRERYV-TDKEYQAVLSVAPL--PVFIAM 301

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP--IGKET 254
           E       R SD      + + N+   I+  KTG              +           
Sbjct: 302 EIAYLCAARVSDVLSLKWEQIGNDGIFIQQGKTGKKQIKAWSPRLQAAIEKAKQLPTSAY 361

Query: 255 FFINNDKQKMNATQFSIWFKAKATKAG------VNKSAHGVRKFSATISADAGATAHELM 308
              N    +     F+  +     +AG       + + H + K       +   ++ +  
Sbjct: 362 VISNQYGNRYMYKGFNEMWVEARNRAGKISGILTDFTFHDL-KAKGISDYE--GSSRDKQ 418

Query: 309 ATYGWKTVDQAETYTKGA 326
              G KT  Q   Y +  
Sbjct: 419 LFSGHKTEGQVLIYDRKV 436


>gi|229098300|ref|ZP_04229247.1| Tyrosine recombinase xerC [Bacillus cereus Rock3-29]
 gi|228685198|gb|EEL39129.1| Tyrosine recombinase xerC [Bacillus cereus Rock3-29]
          Length = 302

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 43/272 (15%), Positives = 96/272 (35%), Gaps = 26/272 (9%)

Query: 85  GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLT 138
            + +  +  S+++  +  +    + G   +  +T   +R  +      K    S  + ++
Sbjct: 21  RNYSKYTIASYQNDLEHFVQFMEREGISSFLDVTYADVRLYLTTLHDEKLARKSVARKVS 80

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194
           S+R L+++ +R+ Y   NP      PK++    +    E++++           G + + 
Sbjct: 81  SLRSLYRFLMREGYRKDNPFALASLPKKELSIPKFLYAEELEELFEVSDTETPLGQRNQA 140

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE------------LPDGF 241
             E +  +G+R S+     +  +   + +I    K      +             + +G 
Sbjct: 141 LLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQRYIPFGSYAQDALITYMENGR 200

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
            +L   T       F+N     + +            KA +    S H +R   AT   D
Sbjct: 201 KQLANKTEEQSHMVFLNAKGTPLTSRGVRYVLNELIKKASLTMRISPHMLRHTFATHMLD 260

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            GA    +    G + +   + YT    + RL
Sbjct: 261 EGADLRTVQELLGHENLSTTQIYTH-VSKERL 291


>gi|23502343|ref|NP_698470.1| phage integrase family site specific recombinase [Brucella suis
           1330]
 gi|23348323|gb|AAN30385.1| site-specific recombinase, phage integrase family [Brucella suis
           1330]
          Length = 164

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 59/155 (38%), Gaps = 14/155 (9%)

Query: 205 RCSDSCRAGVQH-------LQN-----NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252
           R  D               L       + F ++  KTG  + + +     ++L  TP   
Sbjct: 9   RRGDIAALRWDQRCSKTVFLDGEAKSVDGFELRQGKTGKRLLLPITPILSEVLEATPRQG 68

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMAT 310
           ET  +    +  +    +         A + K  + HG+RK    I A+ GA+  ++M T
Sbjct: 69  ETVLVTAYGEPFSPKSLTGRMADWTPSAKLPKGFTLHGLRKTLGKILAEGGASTRQIMDT 128

Query: 311 YGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345
            G   +  AE YT+ A++ RL      R+  +  +
Sbjct: 129 LGHDDIAHAELYTREAEQARLATDGMSRVVRLKRN 163


>gi|16519918|ref|NP_444038.1| DNA integration/recombination/inversion protein [Sinorhizobium
           fredii NGR234]
 gi|2497415|sp|P55632|Y4QK_RHISN RecName: Full=Putative integrase/recombinase y4qK
 gi|2182597|gb|AAB92466.1| DNA integration/recombination/inversion protein [Sinorhizobium
           fredii NGR234]
          Length = 308

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 41/269 (15%), Positives = 90/269 (33%), Gaps = 25/269 (9%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129
           L     +     + ++N+++S+        R  G      +  + IR+        +K  
Sbjct: 20  LRQRMSEDMQVRNFSLNTQLSYLRQVSLFARHFGKAP-DLLGREDIRTYQVYLANEKKLA 78

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
           P+S    + ++R  F   + +++V   P   +  PK+  +     + +++Q F       
Sbjct: 79  PNSIHIAIAALRFFFSVTLERDWV---PAEVLPLPKKPQKLPIILSPDEVQHFLG-CVLD 134

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLA- 246
            +          +GLR S++ +     + +    ++    K      V L    +++L  
Sbjct: 135 LKHHAILTTCYAAGLRISEAVQLKPTDIDSQRMVVRVEQGKGQKDRYVMLSPKLLEILRD 194

Query: 247 --MTPIGKETFFINND-KQKMNATQFSIWFKAKATKA------GVNKSAHGVRKFSATIS 297
               P  KE  F  +     +              KA          + H +R   A   
Sbjct: 195 YWRMPRPKEWLFPGDRAGHPITRDAVG----QACAKAHDLSRLSKPVTPHSLRHAFAVHL 250

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGA 326
            +AGA    +    G +++     Y + A
Sbjct: 251 LEAGADVRTIQLLLGHRSLATTAHYLRIA 279


>gi|260894011|ref|YP_003240105.1| integrase family protein [Ammonifex degensii KC4]
 gi|260866150|gb|ACX53255.1| integrase family protein [Ammonifex degensii KC4]
          Length = 288

 Score =  123 bits (309), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 44/258 (17%), Positives = 89/258 (34%), Gaps = 18/258 (6%)

Query: 85  GSLAVNSRISFESYFDQII--------RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF 136
             L+ +S  ++     + +                  +     R  +  R   P++    
Sbjct: 15  RGLSPSSVRAYLGVVRRFVAWWEGTSGEAFDPRAVTPLDVADYRRYLRGRGLKPATVNFN 74

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF-KSFWSEGS-QPRL 194
           L +++  F+W   +  +  NP   V++        R  T+ ++    ++    G+ + R 
Sbjct: 75  LEAVKSFFRWLKEERALPDNPAEGVKKVPEVKPSPRWLTRREVGLLARAVQRYGTVKDRA 134

Query: 195 AFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELP----DGFMKLLA 246
            F  LL++GLR S++    ++ +    ++    ++  K G    V L         + LA
Sbjct: 135 LFALLLHAGLRVSEAVSLRLEDVVVRERSGFVRVRYGKGGKYREVPLNVTVRRVLKEYLA 194

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHE 306
             P     +     K  M         K     AGV  + H +R        DAG +  +
Sbjct: 195 ELPPQGGGWLFPGKKGPMTPRAVQKRLKFFGRIAGVEVTPHKLRHTFCKWLIDAGESLDK 254

Query: 307 LMATYGWKTVDQAETYTK 324
           +    G   +D    YT+
Sbjct: 255 VALLAGHARLDTTAVYTR 272


>gi|152981264|ref|YP_001354893.1| site specific integrase/recombinase protein [Janthinobacterium sp.
           Marseille]
 gi|151281341|gb|ABR89751.1| site specific integrase/recombinase protein [Janthinobacterium sp.
           Marseille]
          Length = 319

 Score =  123 bits (309), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 51/303 (16%), Positives = 96/303 (31%), Gaps = 47/303 (15%)

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD-------YRKITTKHIRS 121
             L  LIS+         LA  + +S+     +++  +   D             +   +
Sbjct: 12  GYLDNLISQ-------RQLAPLTTVSYRRDLLELLAFATASDSKATLTGVTHFQIRKFAA 64

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
            + ++     S  + L++ R  F W   Q  +  NP   ++ PKR     +    +D  +
Sbjct: 65  QLHAQGLNARSIARKLSAWRGFFTWLSEQNAITSNPVDGIKAPKRSKPLPKALAADDAVR 124

Query: 182 FKSFWSEGSQP--------RLAFEFLLYSGLRCSDSCRA-------------GVQHLQNN 220
             +  + G              FE L  SGLR S+                 G      +
Sbjct: 125 LVAEHAPGKSADSAMQLCNHAMFELLYSSGLRVSELVGLDVRYAQEARYTSAGWIDFDAH 184

Query: 221 IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET--------FFINNDKQKMNATQFSIW 272
              + T K   + TV +    M  L      ++T         F++    +++A    + 
Sbjct: 185 EVMV-TGKGNKMRTVPIGQAAMDALKAWLAVRDTLVKLDPHPLFLSERGTRVSARVVQLR 243

Query: 273 FKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
            KA     G+      H +R   A+    +      +    G  ++   + YT   D  R
Sbjct: 244 LKAHGQAIGLPTDVHPHVLRHSFASHVLQSSGDLRAVQEMLGHASIAATQIYT-SLDFQR 302

Query: 331 LGI 333
           L  
Sbjct: 303 LAQ 305


>gi|187929889|ref|YP_001900376.1| site-specific tyrosine recombinase XerD [Ralstonia pickettii 12J]
 gi|187726779|gb|ACD27944.1| tyrosine recombinase XerD [Ralstonia pickettii 12J]
          Length = 314

 Score =  123 bits (309), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 50/306 (16%), Positives = 97/306 (31%), Gaps = 29/306 (9%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD 110
              +    E  + P +    ++              LA N+  ++            + +
Sbjct: 2   RKAARKDAEAPSLPPQSADAIQRFCDALWLED---GLARNTLDAYRRDLTLYAHWLAERN 58

Query: 111 --YRKITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
               +     +     +R  +   SSA +  T  +  F+WA+R+  V  +P   +   K+
Sbjct: 59  KSIAETEDGDLADYFAARHAESRASSANRRRTVFKRFFQWALREHVVNTDPSRLLPTAKQ 118

Query: 167 KTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222
                +  ++  ++   +        G + R   E +  SGLR S+        +  N  
Sbjct: 119 PPRFPKTLSETQVEALINAPDVDTPLGLRDRAMIELMYASGLRVSEIVALKTVEVGLNEG 178

Query: 223 SIKTQKTGTIITVELP------DGFMKLLAMTPIGK---------ETFFINNDKQKMNAT 267
            ++           +P      D   + L     G+         +  F+    + M   
Sbjct: 179 VVRVVGGKGGKDRLVPFGAEAGDWLRRYLQDRQTGRTALLGERTADALFVTARGEGMTRQ 238

Query: 268 QFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
            F    K  A  A ++   S H +R   AT   + GA    +    G   +   + YT  
Sbjct: 239 AFWYLIKRYALLADIHAPLSPHTLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHV 298

Query: 326 ADRIRL 331
           A R RL
Sbjct: 299 A-RERL 303


>gi|226949603|ref|YP_002804694.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum A2 str. Kyoto]
 gi|226843121|gb|ACO85787.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum A2 str. Kyoto]
          Length = 331

 Score =  123 bits (309), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 47/258 (18%), Positives = 91/258 (35%), Gaps = 13/258 (5%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-KH-TPSSAIQ 135
           Y  S     L++ +  ++      I           I T  +R  + +R K    SS   
Sbjct: 62  YLASKKLDGLSIETLKNYRYNLI-IFADYLRKPLAAIETMDLRMFLGARCKDMKQSSVNG 120

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195
            ++ ++  F W   +EY+  NP   +++ K+     +P T+E+ +  +    E  + +  
Sbjct: 121 QISILKSFFGWLADEEYIPKNPAKKLKQTKQPKRVRKPLTEEEAELLRQAC-ETDRQKAL 179

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELP----DGFMKLLAMTPI 250
            EFL+ +G R  +  +     +  +  S     K      V           K L     
Sbjct: 180 TEFLISTGCRLDEVFKVNKDDINWHEMSLFIVGKGDKERKVYFNTKAKILLKKYLFSRED 239

Query: 251 GKETFFINNDK--QKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHE 306
                F+ + +   ++        FK  A  AG+ KS   H  R   AT   ++G     
Sbjct: 240 DNPALFVTSKRPYHRLGKRSIQREFKKIANIAGIEKSIHPHLFRHSFATYKINSGMPMPI 299

Query: 307 LMATYGWKTVDQAETYTK 324
           +    G ++    + Y +
Sbjct: 300 IQHLMGHESPATTQIYAQ 317


>gi|217967906|ref|YP_002353412.1| integrase family protein [Dictyoglomus turgidum DSM 6724]
 gi|217337005|gb|ACK42798.1| integrase family protein [Dictyoglomus turgidum DSM 6724]
          Length = 300

 Score =  123 bits (309), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 46/275 (16%), Positives = 102/275 (37%), Gaps = 19/275 (6%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           I  Y     +  + + N+  S+        +   + D      ++IRS ++         
Sbjct: 9   IENYINYLRFERNYSPNTLRSYLRDLLDFYKYCKEKDLDFTNKRNIRSYIQFIAQKGYKN 68

Query: 134 IQFLT---SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS--- 187
             F+    S+R  F++ +  E +  +  + +  PK + +  +  + +++++  +  S   
Sbjct: 69  STFVRKVISLRSFFEYLLTFEKIKEDLTVFIPTPKIEKKLPQFLSIDEVRKLLNSPSLDN 128

Query: 188 -EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLL 245
             G + R   E L  +G+R S+      + +  N   I+   K      V + +  +K+L
Sbjct: 129 LIGIRDRAIIETLYATGIRVSELVGINEEDINWNYGEIRVFGKRAKERVVIVGEETLKIL 188

Query: 246 ---------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATI 296
                     +    ++ FF+N    +++     +  K    +     S H +R   AT 
Sbjct: 189 QLYKDYVRPKLLKKPEKAFFLNAKGGRISDRGVRMIIKKYTKEFNKKISPHTLRHTFATH 248

Query: 297 SADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330
             + GA    +    G   +   + YT    D+IR
Sbjct: 249 LLEGGADLRYVQELLGHVRISTTQIYTHLTTDQIR 283


>gi|308188856|ref|YP_003932987.1| Tyrosine recombinase xerC [Pantoea vagans C9-1]
 gi|308059366|gb|ADO11538.1| Tyrosine recombinase xerC [Pantoea vagans C9-1]
          Length = 301

 Score =  123 bits (309), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 39/259 (15%), Positives = 85/259 (32%), Gaps = 19/259 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDY---RKITTKHIRSGVESRKHTPSSAIQF---LT 138
             L+  ++ S+      ++  + +       ++    +RS     +    SA      L+
Sbjct: 20  RQLSPLTQSSYARQLAALVAIADEMKLGSWAQLEPAQVRSMAARSRRAGLSASSLALRLS 79

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLA 195
           ++R    W V Q  ++ NP   V  P++     +    +++ Q            + R  
Sbjct: 80  ALRSFLDWQVSQGLLSANPAKGVMTPRKARHLPKNIDVDEVNQLLEIDLNDPLAVRDRAM 139

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLAMTPIGKET 254
            E +   GLR S+      +H+  +        K      V +    +  +      +ET
Sbjct: 140 LEVMYGGGLRLSELVNMDCRHVDLDSGEVWVVGKGSKERRVPIGRTAVTWIQHWLPLRET 199

Query: 255 F-------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAH 305
           F       F++    +++       F     + GV  +   H +R   AT   ++     
Sbjct: 200 FGGQDDALFLSTRGNRISPRNVQKRFAEWGVRQGVASHIHPHKLRHSFATHLLESSGDLR 259

Query: 306 ELMATYGWKTVDQAETYTK 324
            +    G   +   + YT 
Sbjct: 260 AVQELLGHANLSTTQIYTH 278


>gi|196250937|ref|ZP_03149621.1| integrase family protein [Geobacillus sp. G11MC16]
 gi|196209578|gb|EDY04353.1| integrase family protein [Geobacillus sp. G11MC16]
          Length = 301

 Score =  123 bits (309), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 43/295 (14%), Positives = 109/295 (36%), Gaps = 30/295 (10%)

Query: 71  LKWLISEYRKSAH-WGSLAVNSRISFE---SYFDQIIRKSG-DFDYRKITTKHIRSGVES 125
            +  I E+        + ++N+   +      F+  + + G       IT  H+R  ++ 
Sbjct: 3   FRQAIDEFVLYLQIEKNYSLNTVDGYAYDLRCFENFLIQHGYSVQLNDITKTHVRRFIQH 62

Query: 126 R----KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
           +       P +  + ++ ++   K+ V++  +  +  + ++ PK  ++     +  ++++
Sbjct: 63  QITKENVKPRTIYRRISCLKSFSKYCVKENLIDSDFMIGIDTPKTDSKLPTYMSLSELRK 122

Query: 182 FKSFWSE-----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITV 235
              F  +       +  L F+ L  +G+R S+      + +  +  +I+   K      +
Sbjct: 123 LFHFLEQDNSRMAMRNHLLFKLLATTGMRRSEIVELTWEQIDLSNNTIRIYGKGKKERLL 182

Query: 236 ELPDGFMKLLAM--------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---K 284
            L    + L+               +  F+N + +K+N       FK    KAG+     
Sbjct: 183 PLHPMVVPLIKSYMGSLEEYQLHPSQPVFLNKNGKKLNPRGLHKIFKEILQKAGLPPQRF 242

Query: 285 SAHGVRKFSATISADAGA---TAHELMATYGWKTVDQAETYTK-GADRIRLGIKN 335
           S H +R   AT+             +    G +++   + YT    ++ +  I+ 
Sbjct: 243 SLHHLRHTFATLLIQENKENVDLRTVQELLGHESLVTTQVYTHVDFEQKKKAIET 297


>gi|284048585|ref|YP_003398924.1| tyrosine recombinase XerC [Acidaminococcus fermentans DSM 20731]
 gi|283952806|gb|ADB47609.1| tyrosine recombinase XerC [Acidaminococcus fermentans DSM 20731]
          Length = 311

 Score =  123 bits (309), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 45/259 (17%), Positives = 92/259 (35%), Gaps = 23/259 (8%)

Query: 89  VNSRISFESYFDQIIRKSGDFDYRKITTKHIR---SGVESRKHTPSSAIQFLTSMRVLFK 145
            N       + + + +++ DF + ++T   IR   + +  R  +  +  + ++S+R  ++
Sbjct: 36  ENYLADIRHFKEFMAQRTEDFRWPQVTVLDIRSYLAQMHDRDLSRRTIARRISSLRSFYR 95

Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLAFEFLLY 201
           +  R+  V  NP   V  PK + +      + ++             G + R   EFL  
Sbjct: 96  YLRREGRVKTNPFTRVRTPKLEKKLPVFLEEFEINLLLRMPDCTTVLGRRDRAILEFLYS 155

Query: 202 SGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAM------------- 247
           +G R S+     +  +   N ++I   K      V L    +  +               
Sbjct: 156 TGCRVSELVGLTLTRVDLGNRYAILLGKGRKERLVPLGHPCVAAMEDYLRHSRGTLMEKY 215

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAH 305
                +T F+N+  + ++A               + K  S H +R   AT   D GA   
Sbjct: 216 QAPRHQTVFVNSRGRPLSARSVRRILDKYVEMTALQKHVSPHTIRHTFATHLLDHGADLR 275

Query: 306 ELMATYGWKTVDQAETYTK 324
            +    G  ++   + YT 
Sbjct: 276 AVQELLGHVSLSTTQIYTH 294


>gi|259503196|ref|ZP_05746098.1| tyrosine recombinase XerD [Lactobacillus antri DSM 16041]
 gi|259168853|gb|EEW53348.1| tyrosine recombinase XerD [Lactobacillus antri DSM 16041]
          Length = 295

 Score =  123 bits (309), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 46/271 (16%), Positives = 103/271 (38%), Gaps = 25/271 (9%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGVESRK---HTP 130
            Y KS H    + N+ +S+    D      R+ G  D+  +    + + V  +K    +P
Sbjct: 10  AYLKSNH--GRSANTLLSYRRDLDQAVAFFRQRGVSDWTAVDQYQLLALVAEQKKRGRSP 67

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE-GIRPWTKEDMQQFKSF---- 185
           ++  + L+++R  +++ VR + +  NP   ++  ++  +      T  +++Q  +     
Sbjct: 68  ATINRQLSALRQFYRYLVRHQQLRFNPTELIDNQEQTDDTPPVILTAAEIKQLLAAPNPD 127

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-KTGTIITVELPD----G 240
              G + R     L  +G+R S+     +  L  +I  ++    +     V + D     
Sbjct: 128 HPLGKRDRAMLAVLATTGMRVSELVALLLTDLHLDIKMLRLGSGSRRERLVPVSDQAVQE 187

Query: 241 FMKLLAM-----TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFS 293
               LA        +G++  F+N    ++         +    +AG+ K  +   +R   
Sbjct: 188 LEHYLAAVRPQLAAMGEQAVFVNAHGHQLTRQGIWKKLRELVRRAGIEKTVTPRTLRYSF 247

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324
           A     +GA    +    G+  +   + Y K
Sbjct: 248 AVQLLQSGADGRLIQEMLGYSELRAIKPYLK 278


>gi|77463707|ref|YP_353211.1| putative integrase for prophage CP-933U [Rhodobacter sphaeroides
           2.4.1]
 gi|77388125|gb|ABA79310.1| putative integrase for prophage CP-933U [Rhodobacter sphaeroides
           2.4.1]
          Length = 277

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 45/254 (17%), Positives = 85/254 (33%), Gaps = 20/254 (7%)

Query: 89  VNSRISFESYFDQIIRKSGDFDYRKITTKHIR----SGVESRKHTPSSAIQFLTSMRVLF 144
             +R  +  +  ++  +  D           R       +   H+P       T   VL 
Sbjct: 5   ERTRTDYRRWGLRLAEEFKDDPAEIFEDPGSRGEVNEWRKQWAHSPRQYDYAGTVAAVLL 64

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGL 204
            WAV Q  +  + C  + +          WT +  +  ++   E    R        +GL
Sbjct: 65  NWAVDQGKIRQHHCQRLRKVYEVDRAEIVWTPDHREAIEAKAPE--WIRRILTAACETGL 122

Query: 205 RCSDSCRAGVQHLQ----NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINND 260
           R +D  +    H++         ++T K   +  + + +   KLL  TP  +    ++  
Sbjct: 123 RVADLTKLAWSHVEATPHGRRIRVRTSKRKRVAYIPVTEAMGKLLDATPRDRMLILLSER 182

Query: 261 KQKMNATQFSIWFKAKATKAGV-------NKSAHGVRKFSATISADAGATAHELMATYGW 313
            + +   + S   +    KAG+       +      R  +AT    AG +  E+ A  GW
Sbjct: 183 GKPLTPHRASEGLRQWRDKAGLTPESLGYDLRLQDARGTAATRLLSAGLSLAEIAAHMGW 242

Query: 314 KTVDQA---ETYTK 324
                A   E Y +
Sbjct: 243 SIRHAAAVIEHYAR 256


>gi|229019026|ref|ZP_04175867.1| Tyrosine recombinase xerC [Bacillus cereus AH1273]
 gi|229025272|ref|ZP_04181692.1| Tyrosine recombinase xerC [Bacillus cereus AH1272]
 gi|228736025|gb|EEL86600.1| Tyrosine recombinase xerC [Bacillus cereus AH1272]
 gi|228742266|gb|EEL92425.1| Tyrosine recombinase xerC [Bacillus cereus AH1273]
          Length = 302

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 43/272 (15%), Positives = 96/272 (35%), Gaps = 26/272 (9%)

Query: 85  GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLT 138
            + +  +  S+++  +  +    + G   +  +T   +R  +      K    S  + ++
Sbjct: 21  RNYSKYTIASYQNDLEHFVQFMEREGISSFLDVTYADVRLYLTTLHDEKLARKSVARKVS 80

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194
           S+R L+++ +R+ Y   NP      PK++    +    E++++           G + + 
Sbjct: 81  SLRSLYRFLMREGYQKDNPFALASLPKKELSIPKFLYAEELEELFEVSDTETPLGQRNQA 140

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE------------LPDGF 241
             E +  +G+R S+     +  +   + +I    K      +             + +G 
Sbjct: 141 LLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQRYIPFGSYAQDALITYIENGR 200

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
            +L+  T       F+N     +              KA +    S H +R   AT   D
Sbjct: 201 KQLIQKTEEHSHMVFLNAKGTPLTDRGVRYVLNELIKKASLTMRISPHMLRHTFATHMLD 260

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            GA    +    G + +   + YT    + RL
Sbjct: 261 EGADLRTVQELLGHENLSTTQIYTH-VSKERL 291


>gi|168786649|ref|ZP_02811656.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC869]
 gi|189373217|gb|EDU91633.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC869]
          Length = 298

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 41/270 (15%), Positives = 91/270 (33%), Gaps = 20/270 (7%)

Query: 75  ISEYRKSAH-WGSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGVESRKHTP 130
           +  Y +       L+  + ++++   + II    ++G  ++++     +R+     +   
Sbjct: 8   VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQNWQQCDAAMVRNFAVRSRRKG 67

Query: 131 SSAIQF---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186
             A      L+++R  F W V Q  +  NP   V  PK      +    +D+ +      
Sbjct: 68  LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKTPRHLPKNIDVDDINRLLDIDI 127

Query: 187 --SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMK 243
                 + R   E +  +GLR S+     ++HL           K      + +    + 
Sbjct: 128 NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVIGKGSKERRLPIGRNALS 187

Query: 244 LLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSA 294
            +              +  F++   ++++A      F     K G+N     H +R   A
Sbjct: 188 WIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFA 247

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324
           T   ++      +    G   +   + YT 
Sbjct: 248 THMLESSGDLRGVQELLGHANLSTTQIYTH 277


>gi|323165681|gb|EFZ51467.1| integrase [Shigella sonnei 53G]
          Length = 356

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 61/343 (17%), Positives = 114/343 (33%), Gaps = 25/343 (7%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHE---STFIPAYMSALTGSTPKREYINS 63
           LPP +     R+     Y     G+   L        +  I A +   +G   K      
Sbjct: 12  LPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLTARI 68

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
                 TL   +  Y K      +   + I++ S    I R   D     ITTK I + +
Sbjct: 69  NSDNSVTLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAML 128

Query: 124 ESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
                    +SA    +++   F+ A+ + ++   P  +    K +    R    E ++ 
Sbjct: 129 NGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTKPVAATRAAKSEVRRSRLTADEYLKI 188

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE----- 236
           +++  S     RLA E  + +G R  D C      + +    ++  KTG  I +      
Sbjct: 189 YQTAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTTLHV 248

Query: 237 ----LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NKSAH 287
               +            +G ET   +  ++ +++   S +F      +G+       + H
Sbjct: 249 DALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPPTFH 308

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
            +R   +    +   +        G K+   A  Y    DR R
Sbjct: 309 ELR-SLSARLYEKQISDKFAQHLLGHKSDTMASQY--RDDRGR 348


>gi|251787836|ref|YP_003002557.1| site-specific tyrosine recombinase XerC [Dickeya zeae Ech1591]
 gi|247536457|gb|ACT05078.1| tyrosine recombinase XerC [Dickeya zeae Ech1591]
          Length = 302

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 44/259 (16%), Positives = 89/259 (34%), Gaps = 19/259 (7%)

Query: 85  GSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFLT 138
             L+  ++ S+      II     SG  +++ +    +R+ V   K      +S  Q L+
Sbjct: 22  RQLSPLTQRSYAHQLQVIIEMLSSSGIAEWQALDAAGVRAVVARSKRDGLNAASLAQRLS 81

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLA 195
           ++R L  W V +  +  NP   V  PK      +    ++M +            + R  
Sbjct: 82  ALRSLLDWLVGRGELKANPARGVPAPKAGRHLPKNMDVDEMNRLLEIDLNDPLAVRDRAM 141

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI--------ITVELPDGFMKLLAM 247
            E +  +GLR ++       H+      +     G+           V     ++ +  +
Sbjct: 142 LEVMYGAGLRLAELVGLDCGHINLESGEVWVMGKGSKERRLPVGATAVTWLTHWLAIREI 201

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAH 305
                +  FI++  ++++       F     K GVN     H +R   AT   ++     
Sbjct: 202 YAPEDDAVFISSLGKRISMRNVQKRFAEWGVKQGVNSHVNPHKLRHSFATHMLESSGDLR 261

Query: 306 ELMATYGWKTVDQAETYTK 324
            +    G   +   + YT 
Sbjct: 262 AVQELLGHANLSTTQIYTH 280


>gi|225023845|ref|ZP_03713037.1| hypothetical protein EIKCOROL_00711 [Eikenella corrodens ATCC
           23834]
 gi|224943319|gb|EEG24528.1| hypothetical protein EIKCOROL_00711 [Eikenella corrodens ATCC
           23834]
          Length = 307

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 44/268 (16%), Positives = 87/268 (32%), Gaps = 13/268 (4%)

Query: 70  TLKWL--ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127
           ++ W   I  +  S    + + ++  ++      +          +         +  + 
Sbjct: 2   SIGWTAQIEAWLHSLQQQNHSPHTLAAYRRDLTWLADFQPQSKLARPLFTAALRQLGQQN 61

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
             P S  + L++ R   +W V+  Y+  +P   ++ PK      +    E + Q      
Sbjct: 62  QHPRSIARRLSAWRQFCRWLVQTGYLKADPTHGLKAPKAPERLPKAVPAEPLNQLLDQAP 121

Query: 188 EG---SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFMK 243
           E    S+    FE L  SGLR +++C   +  L      I     G     + L    ++
Sbjct: 122 ENPLDSRDLAIFELLYGSGLRLAEACALDLDDLNLQSGWIAVTGKGRKQRHLPLTAQSIR 181

Query: 244 LL------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG-VNKSAHGVRKFSATI 296
            L            +   F     +++ A Q     +  AT  G  + S H +R   A+ 
Sbjct: 182 ALAGYLKTRTAAPDETALFTGRTGRRLGARQIQKRLQQFATHHGSRHLSPHMLRHSYASH 241

Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324
                     +    G   +   + YTK
Sbjct: 242 LLQNARDIRAVQELLGHSQLATTQHYTK 269


>gi|110680280|ref|YP_683287.1| tyrosine recombinase XerD [Roseobacter denitrificans OCh 114]
 gi|109456396|gb|ABG32601.1| tyrosine recombinase XerD [Roseobacter denitrificans OCh 114]
          Length = 323

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 44/286 (15%), Positives = 98/286 (34%), Gaps = 33/286 (11%)

Query: 72  KWLISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGV---ES 125
              IS + ++ A     A N+ +++                D+   T   + + +   ++
Sbjct: 5   GTWISAFLEAQAAELGAARNTLLAYGRDLKDFEGYLHHRTLDFATATQGDVEAYLIACDA 64

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +  + ++  + L++++ L+++A  + + + NP L +  P R  +  +  ++ ++ +    
Sbjct: 65  QGLSKATRARRLSAVKQLYRFAFEEGWRSDNPALQITGPGRDRKLPKTLSEAEVDRLLEA 124

Query: 186 W-------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVEL 237
                   ++ ++     E L  +G+R S+     V   + +    +   K G    V L
Sbjct: 125 ARTSGRNAADRARNTCLMELLYATGMRVSELVSLPVSAARGDPRMLLIRGKGGKERMVPL 184

Query: 238 PDGFMKLLAMT----------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281
                   +                  P  +  F        +   +F +  K  A  AG
Sbjct: 185 SPPARDATSEWLQLRDEKEAQKKTEGHPPSRFLFASRGVSGHLTRHRFYLLIKELAVNAG 244

Query: 282 V---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           V     + H +R   AT     GA    +    G   V   E YT 
Sbjct: 245 VSPSKVTPHTLRHAFATHLLANGADLRSIQTLLGHADVATTEIYTH 290


>gi|239947482|ref|ZP_04699235.1| tyrosine recombinase XerD [Rickettsia endosymbiont of Ixodes
           scapularis]
 gi|239921758|gb|EER21782.1| tyrosine recombinase XerD [Rickettsia endosymbiont of Ixodes
           scapularis]
          Length = 306

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 50/287 (17%), Positives = 106/287 (36%), Gaps = 39/287 (13%)

Query: 75  ISEYRKSA-HWGSLAVNSRISFESYF----DQIIR-KSGDFDYRKITTKHIRSGVESRKH 128
           IS++ +      +L+ NS +S++       + + + K  + +      +     + +   
Sbjct: 4   ISQFLEMLLAERALSKNSILSYKRDLFDFQNYLAKQKLSELNITTENVRDWIEYLATNDL 63

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-- 186
              S  + +++++  +++ + + ++A NP L+V+ PK + +     + + ++        
Sbjct: 64  QARSINRKISTIKSYYEFLISENHIAFNPVLNVDLPKYQNKLPEILSIDQIKSLLEHCSQ 123

Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN---------IFSIKTQKTGTIIT 234
               EG +       L  SGLR S+     +  +  N         IFS+  +     + 
Sbjct: 124 DNSPEGIRLNAMIHLLYASGLRVSELVSLKLADILTNKTSKGEVRKIFSVLGKGNKERVI 183

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQK--------------MNATQFSIWFKAKATKA 280
           V      + +     I     F+N  K K              M    F+I  K+ A  A
Sbjct: 184 VINEQAVISIAKYLAIRD--VFVNKAKPKNLIYLFPSSALAGYMTRQNFAILLKSAALYA 241

Query: 281 GVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           G+N    S H +R   A+   + GA    +    G   +   + YT 
Sbjct: 242 GLNPEHISPHILRHSFASHLLEGGADLRVIQELLGHADISTTQIYTH 288


>gi|126726516|ref|ZP_01742357.1| tyrosine recombinase XerD [Rhodobacterales bacterium HTCC2150]
 gi|126704379|gb|EBA03471.1| tyrosine recombinase XerD [Rhodobacterales bacterium HTCC2150]
          Length = 312

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 40/276 (14%), Positives = 97/276 (35%), Gaps = 32/276 (11%)

Query: 86  SLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGV---ESRKHTPSSAIQFLTSM 140
             + N+ +++                D++  + + I   +   +++    S+  + L+++
Sbjct: 24  DASENTLLAYARDLKDFQDWIARQKLDFQTTSREDIEKYLINCDAQGLAKSTRARRLSAV 83

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS-------FWSEGSQPR 193
           + LF++A        NP L ++ P R     +  +++++ +  +         S+ ++  
Sbjct: 84  KQLFRFAYEDGRRDDNPALQIKGPGRDKRLPKTLSEDEVDRLLASASSLGRKDSDRARNT 143

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252
              + L  +G+R ++     V   + +    +   K G    V L     +  A     +
Sbjct: 144 CMMQLLYATGMRVTELVSLPVSAARGDPRMILVMGKGGKERLVPLSPPAREATATWLNIR 203

Query: 253 ET--------------FFINNDKQ--KMNATQFSIWFKAKATKAGVN---KSAHGVRKFS 293
           +               F   +  +   +   +F +  K  + +AGV+    + H +R   
Sbjct: 204 DATQKLAEKKGAAPSRFLFPSSGKLGHITRHRFYLLIKEISVQAGVDPSKVTPHTMRHAF 263

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           AT     GA    +    G   +   E YT   D  
Sbjct: 264 ATHLLARGADLRSIQTLLGHADISTTEIYTHVLDER 299


>gi|237668049|ref|ZP_04528033.1| tyrosine recombinase XerC [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|237656397|gb|EEP53953.1| tyrosine recombinase XerC [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 332

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 43/261 (16%), Positives = 89/261 (34%), Gaps = 13/261 (4%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR--SGVESRKHTPSS 132
           I  Y +     + +  +  ++                  I+   IR    +      PS+
Sbjct: 58  ILLYLQVKKLENYSKATLNNYMYTLRNFS-NFIVKPVSNISKNDIRYFMAINYENLKPST 116

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
               L  ++  F+W  ++E +  NP   ++  +         T E++++ +    +  + 
Sbjct: 117 VNNKLACIKAFFEWLEQEEIIPKNPARYLQGTRLPKHLRHSLTIEELEKIRLSCKD-VRE 175

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG----FMKLLAM 247
           R   EFL  +G R S+  +A +  L  +   ++   K     TV   D         +  
Sbjct: 176 RALIEFLFATGCRISEVVKANISDLDLSNNLLRVIGKGDKERTVFFNDKTKLHIKNYIDT 235

Query: 248 TPIGKETFFINN--DKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGAT 303
                E  FI +    +++      +       +A + KS   H +R   AT+   +GA 
Sbjct: 236 RKDENEALFIASKFPYKRIGKRGLELIISRIGERADIGKSVYPHLLRHTMATLGLQSGAD 295

Query: 304 AHELMATYGWKTVDQAETYTK 324
              +    G  T    + Y +
Sbjct: 296 ITTIQHLLGHTTPSTTQIYAE 316


>gi|154491730|ref|ZP_02031356.1| hypothetical protein PARMER_01346 [Parabacteroides merdae ATCC
           43184]
 gi|154087971|gb|EDN87016.1| hypothetical protein PARMER_01346 [Parabacteroides merdae ATCC
           43184]
          Length = 302

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 54/278 (19%), Positives = 103/278 (37%), Gaps = 29/278 (10%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIR-----KSGDFDYRKITTKHIRSGV---E 124
           LI  +     +  + +  +  ++     Q        K G F   ++ T  +R+ +    
Sbjct: 4   LIDSFLDYLRYERNYSEYTINAYFKDLQQFEDFVKEKKEGIFVPEEVDTDIVRNWIISLL 63

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
             K +P S  + L+S++  FK+ ++Q +V++NP   V  PK K        ++DM++   
Sbjct: 64  DNKISPVSVNRKLSSLKSFFKFLMKQGFVSVNPLRFVTGPKTKKPLPTFVKEKDMEELLD 123

Query: 185 FWS-----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELP 238
                   EG + RL  E L  +G+R S+        +  +   I+ T K      +   
Sbjct: 124 GDGFDEDFEGVRDRLVLEMLYDTGVRRSELVGLQDTDIDYDAMLIRVTGKRNKQRLIPFA 183

Query: 239 DGFMKLLAM--------TPIGKETFFINNDKQKMN----ATQFSIWFKAKATKAGVNKSA 286
           +    L+             G   FF+  + ++++     T          T A    S 
Sbjct: 184 ERLKNLMLAYTEVRNREVDAGCGWFFVRKNGEQLSTGILYTIVKKRLSDIPTLA--KCSP 241

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           H +R   AT   + GA  + +    G  ++     YT 
Sbjct: 242 HVLRHSFATSMLNNGAELNAVKELLGHSSLASTSIYTH 279


>gi|89068929|ref|ZP_01156311.1| tyrosine recombinase XerD [Oceanicola granulosus HTCC2516]
 gi|89045510|gb|EAR51574.1| tyrosine recombinase XerD [Oceanicola granulosus HTCC2516]
          Length = 315

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 48/292 (16%), Positives = 100/292 (34%), Gaps = 34/292 (11%)

Query: 74  LISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFD--YRKITTKHIRSGV---ESRK 127
            I  + ++ A     A N+++++                 +      H+ + +   E+  
Sbjct: 11  WIQAFLEAQAAELDAATNTQLAYARDLKDFAAWLERRPAHFADAAQSHVEAYLIDCEAIG 70

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              ++  + L++++ L+++A  + + A NP + +  P R+    +  + E++ +  +  +
Sbjct: 71  LARATRARRLSAIKQLYRFAFEEGWRADNPAIRIAGPGREKRLPKTLSVEEVDRLLA--A 128

Query: 188 EGSQPRLAF------EFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDG 240
             + PR A       E L  +G+R S+     V   + +    +   K G    V L  G
Sbjct: 129 ARTTPRDAVRNTCLVELLYATGMRVSELVSLPVAATRGDPRMLLVRGKGGKERMVPLSQG 188

Query: 241 FMKLLA--------------MTPIGKETFFINNDKQ--KMNATQFSIWFKAKATKAGV-- 282
               +A                      F   +  +   +   +F    K  A   GV  
Sbjct: 189 ARAAVAEWLVARDAAEAAAQARGKAASRFLFPSHGKDGHLTRHRFFTLIKEIAVLGGVSP 248

Query: 283 -NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
              + H +R   AT   + GA    +    G   V   E YT   D     +
Sbjct: 249 EKVTPHTLRHAFATHLLEGGADLRSIQTLLGHADVGTTEIYTHVLDARLRAL 300


>gi|323974393|gb|EGB69521.1| tyrosine recombinase XerC [Escherichia coli TW10509]
          Length = 298

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 41/270 (15%), Positives = 91/270 (33%), Gaps = 20/270 (7%)

Query: 75  ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRK 127
           +  Y +       L+  + ++++   + II  + +   +          ++       + 
Sbjct: 8   VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKG 67

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186
              +S    L+++R  F W V Q  +  NP   V  PK      +    +D+ +      
Sbjct: 68  LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDINRLLDIDI 127

Query: 187 --SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT--------VE 236
                 + R   E +  +GLR S+     ++HL      +     G+           V 
Sbjct: 128 NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVA 187

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSA 294
             + ++ L  +     +  F++   ++++A      F     K G+N     H +R   A
Sbjct: 188 WIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFA 247

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324
           T   ++      +    G   +   + YT 
Sbjct: 248 THMLESSGDLRGVQELLGHANLSTTQIYTH 277


>gi|307718592|ref|YP_003874124.1| tyrosine recombinase XerC [Spirochaeta thermophila DSM 6192]
 gi|306532317|gb|ADN01851.1| tyrosine recombinase XerC [Spirochaeta thermophila DSM 6192]
          Length = 312

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 46/290 (15%), Positives = 94/290 (32%), Gaps = 30/290 (10%)

Query: 74  LISEYRKS-AHWGSLAVNSRISFESYF---DQIIRKSGDFDYRKITT--KHIRSGVESRK 127
           LI  +    +H   L+  +  S+ +        + K G           +H  +     +
Sbjct: 16  LIDRFLAHLSHMRGLSEATVRSYRNDLVKVGAFLEKLGTDLVSATREDIRHCVAEYTLAR 75

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
             PSS  + L+S+R  +++  ++   + +P   +   K          ++++ +      
Sbjct: 76  QAPSSINRMLSSLRSWYRFLRKEGVRSDSPMEGISSVKAGKRLPSFLFEDEVDRLLDIEG 135

Query: 188 ---EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMK 243
                 + R   E L  +G R  +        +Q +    +   K G    + L  G  K
Sbjct: 136 SDFASLRDRALLEVLYSTGCRVQELVSLTTSGVQVSRGWCVVKGKGGKERLLFLGLGARK 195

Query: 244 LLAM------------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289
            LA                 +   F+N     +     +   + +A + G+ K  S H  
Sbjct: 196 ALAAYLPLRQALLERMGRREEGALFVNQKGSPLTPRGVAYIIERRAREKGLEKRISPHVF 255

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
           R   AT     GA    +    G  ++   + YT       L +   +R+
Sbjct: 256 RHSFATHVLSRGADLRVVQEMLGHASLSTTQVYTH------LSLPALKRM 299


>gi|312884205|ref|ZP_07743916.1| site-specific tyrosine recombinase XerC [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309368133|gb|EFP95674.1| site-specific tyrosine recombinase XerC [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 310

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 36/273 (13%), Positives = 93/273 (34%), Gaps = 24/273 (8%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQI--------IRKSGDFDYRKITTKHIRSGVES 125
           L++ Y        L+++++ +++   + +        I      D   +     +   + 
Sbjct: 16  LVNFYEYLRAEKGLSLHTQRNYKQQLETMAFQLVQLGIEDWSSVDAAWVRQLASKGMRDG 75

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
            K   SS    L+S+R  F + + +  +A NP   V  P++K    +    +++ Q    
Sbjct: 76  MKA--SSLATRLSSLRAFFDFLILRGEIAANPAKGVSAPRKKRPLPKNLDVDEVNQLLEV 133

Query: 186 W---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---------II 233
                   + R   E +  +GLR ++     ++ ++ +   ++    G            
Sbjct: 134 DEDDPLAVRDRAIMELMYGAGLRLAELVNVDLKDIRTSRGELRVVGKGEKERKVPFAGQA 193

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRK 291
            + +         ++   +   F++    +++             K  V  + S H +R 
Sbjct: 194 VIWVEKWLRVRGQLSDPNESALFVSKLGGRISHRSVQKRMAEWGQKQAVSSHISPHKLRH 253

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK 324
             AT   ++      +    G + +   + YT 
Sbjct: 254 SFATHMLESSQNLRAVQELLGHENISTTQIYTH 286


>gi|239948273|ref|ZP_04700026.1| integrase [Rickettsia endosymbiont of Ixodes scapularis]
 gi|239922549|gb|EER22573.1| integrase [Rickettsia endosymbiont of Ixodes scapularis]
          Length = 395

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 59/298 (19%), Positives = 107/298 (35%), Gaps = 21/298 (7%)

Query: 59  EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESY--FDQIIRKSGDFDYRKITT 116
           E  + P  +  T K L  +Y  +        N +   +     ++  +         I  
Sbjct: 99  ELNDLPISEELTFKELFDKYINNYA----KHNIKRWRDCIATMNRQAKHFYPMKISAIQK 154

Query: 117 KHIRSGVESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
             I+    +  K    SA +FL  +  +F  A+  E +  NP   +++ K ++   R  T
Sbjct: 155 ADIQQTFHNLTKFGKYSANKFLEMLSAIFNKAIEWELLGKNPVTGLKKHKEQSR-DRYIT 213

Query: 176 KEDMQQFKSFWSEGSQPRLA--FEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGT 231
           KE+  QF     E     +       LY+G R S+      +++   N  + I   K G 
Sbjct: 214 KEEAPQFFQALKEEQNQLMKDFILISLYTGARKSNVLSMRWENVSFGNKTWYIADTKNGD 273

Query: 232 IITVELPDGFMKLLAMTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHG 288
             TV L +  +K+L       E+   F +      +  +    +K   T+AG+ +   H 
Sbjct: 274 PQTVVLIEEAIKILEARKKESESEWVFPSEASSSGHLQEPKKAWKRICTRAGLKDLRLHD 333

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346
           +R+   +  A  GA+ + +      K+      Y       RL +   R       SD
Sbjct: 334 LRRTCGSWMAINGASQYVIGKALNHKSPTSTAIY------ARLSLDPVREFMEKSTSD 385


>gi|297543544|ref|YP_003675846.1| integrase family protein [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|296841319|gb|ADH59835.1| integrase family protein [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 373

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 57/331 (17%), Positives = 116/331 (35%), Gaps = 40/331 (12%)

Query: 49  SALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSG 107
            AL     K E          TL+  I+E+ K       A  + IS +S  +  II   G
Sbjct: 42  KALAEIIAKIEKNEFIEPSKITLQQFINEWLKIYGEPKWAPKTLISNKSLINNYIIPNLG 101

Query: 108 DFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP 164
             + +K+    I+      K      ++       +  + K+AV+ +Y+A NPC  VE P
Sbjct: 102 HIELQKLKPVEIQKFYNFLKEKQLSNTTVNYVHKLLNQVLKFAVKWQYIAKNPCELVEAP 161

Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
           K+  +    W  E +++ K  + + +   +     L++GLR  + C    + +     +I
Sbjct: 162 KKDKKEFVTWNFEHVKKAKKIFKD-TPIYIHVMIALHTGLRLGEICGLRWEDIDFKNQTI 220

Query: 225 KTQKTGTIIT----------------VELPDGFMKLLAMTPIGK---------------E 253
             ++T   I                 + +PD  +++L      +               E
Sbjct: 221 TVRRTAQRIDGRFIFKEPKTETSKGIIAIPDFLVQILKQEKNKQLQNKLIFGEKYITEYE 280

Query: 254 TFF-INNDKQKMNATQFSIWFKAKA-TKAGVNK-SAHGVRKFSATISADAGATAHELMAT 310
            F  +  D +       +  FK     ++ +     H +R   AT+   +G     +   
Sbjct: 281 GFISVWEDGRFKEPDYVTKKFKKILQKQSEIPVIRFHDLRHTHATLMLRSGVDLKTISKR 340

Query: 311 YGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
                +     +    D + +  +  R++ +
Sbjct: 341 LRHGRISTTADFYSHVD-LEMEREALRKLEA 370


>gi|210633132|ref|ZP_03297699.1| hypothetical protein COLSTE_01612 [Collinsella stercoris DSM 13279]
 gi|210159286|gb|EEA90257.1| hypothetical protein COLSTE_01612 [Collinsella stercoris DSM 13279]
          Length = 305

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 45/288 (15%), Positives = 100/288 (34%), Gaps = 28/288 (9%)

Query: 74  LISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT--KHIRSGVESRKHTP 130
           LI +Y    + +   +  +  ++  + +   R +       +    + +R+ +   +   
Sbjct: 11  LIDDYIAHLSRFEGASSETVRAYTQHLEAYARWAARAGRDGLAPSTRDVRAYLSELRAAG 70

Query: 131 SSAIQF---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            +A      L+S+R  F+W   +     +P  ++  PK           + + +      
Sbjct: 71  YAARTVAAHLSSIRSFFRWLSDEGLAGADPVTAIASPKLDRPLPHVLAPDQLARLMDAPD 130

Query: 188 E----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFM 242
                G +     E  + +G R S+     +  +  +  S++   K      V L D   
Sbjct: 131 LASAGGKRDAAMLELFIATGARISELAALDLADVDVSRASVRLFGKGSKERLVPLYDRAC 190

Query: 243 KLLA--------------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286
            + A                   + +FFI++  + M+A+     F A   +AG+    + 
Sbjct: 191 SVCARYLEEGRGELLGRGAASSREASFFISDRGRPMSASSLRHRFDALKRRAGIPADITP 250

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGI 333
           H +R   AT     GA    +    G  ++   + YT    DR++  +
Sbjct: 251 HAMRHTFATELLIGGADLRSVQELLGHASLSTTQIYTHLTPDRLKSAV 298


>gi|90408775|ref|ZP_01216920.1| integrase/recombinase (XerC/CodV family) [Psychromonas sp. CNPT3]
 gi|90310119|gb|EAS38259.1| integrase/recombinase (XerC/CodV family) [Psychromonas sp. CNPT3]
          Length = 298

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 38/271 (14%), Positives = 97/271 (35%), Gaps = 21/271 (7%)

Query: 75  ISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGD---FDYRKITTKHIR---SGVESRK 127
           I  Y    A    L+  +  ++     + I          ++ + + H+R     +  + 
Sbjct: 7   IDRYLNHIASQRGLSPITIKNYSRNLAEFISLLEPQNIKSWQDLNSDHVRLIIKELHQKG 66

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186
               S    ++++R   ++ V+ E +  NP   V  PK      +  + +++ Q  +   
Sbjct: 67  IKSRSIATKISALRSFLEFLVQDEVLTFNPAKGVVTPKLNKPLPKNISVDEVFQLLNIHE 126

Query: 187 --SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELP----D 239
                 + +   E +  SGLR S+     ++ L+     +    K      + +     +
Sbjct: 127 DDPLSLRDQCMMELMYSSGLRLSELVGIDLKDLKLREAEVMVLGKGSKQRLLPITKKAVE 186

Query: 240 GFMKLLAMTP----IGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293
                L + P     G++  F++  K++++A    +  +    +  +  + + H +R   
Sbjct: 187 SLRAWLKVRPELCESGEQALFVSKQKKRISARNVQMRMEKWGLQQQLPSHLNPHKLRHSF 246

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324
           AT   ++      + +  G   +   + YT 
Sbjct: 247 ATHMLESSGNLRAVQSLLGHANLSTTQVYTH 277


>gi|194364318|ref|YP_002026928.1| site-specific tyrosine recombinase XerD [Stenotrophomonas
           maltophilia R551-3]
 gi|194347122|gb|ACF50245.1| tyrosine recombinase XerD [Stenotrophomonas maltophilia R551-3]
          Length = 325

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 46/268 (17%), Positives = 84/268 (31%), Gaps = 30/268 (11%)

Query: 86  SLAVNSRISFESYFDQIIR-----KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSM 140
            LA  +  S+    + + R     + G     +       +       +P S  + L+++
Sbjct: 40  GLARATLDSYRRDLEGLARWTDGREGGLAGIERPGLFDYLAWRTRHGWSPRSNARLLSAL 99

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLAF 196
           R  F   VR+   + +P   ++ PK      +   +  +    +        G + R   
Sbjct: 100 RAFFADGVRRGDRSEDPSALLDPPKLPRLLPKALAESQIDALLAAPDIDSPLGLRDRAML 159

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLL---------- 245
           E +  +GLR S+        +      ++ T K      V L +     L          
Sbjct: 160 ELMYAAGLRVSELVLLPATAVNLRQGVLRVTGKGSKERLVPLGEESQHWLERYLQQSRPQ 219

Query: 246 -------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSAT 295
                       G+   FI      +    F    K  A  AG++    S H +R   AT
Sbjct: 220 LVGKGKVQALADGQTPLFIEPTLHALTRQAFWHLVKRHAQVAGIDPARISPHALRHSFAT 279

Query: 296 ISADAGATAHELMATYGWKTVDQAETYT 323
              + GA    L    G  ++   + YT
Sbjct: 280 HLLNRGADLRALQMLLGHSSLSTTQIYT 307


>gi|257458301|ref|ZP_05623450.1| tyrosine recombinase XerD [Treponema vincentii ATCC 35580]
 gi|257444328|gb|EEV19422.1| tyrosine recombinase XerD [Treponema vincentii ATCC 35580]
          Length = 297

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 44/276 (15%), Positives = 93/276 (33%), Gaps = 27/276 (9%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH----IRSGVESRKHTPSSA 133
           Y  SA   + A  +  ++ +      ++ G     +  +                T  + 
Sbjct: 12  YLISAE--ARAQLTAKTYINTMRLFQQQLGSERLIEDASADDCIGFLLARAEEGITGRTL 69

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----G 189
            +   ++R  +++   +   A NP   +E P+R+    R    +++ +  +        G
Sbjct: 70  AKDQAALRSFYRFLQLENVRADNPAEQLESPRREKNLPRALELDEVDKLLAAIPLDTPNG 129

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-------------TIITVE 236
            + R  FE +  +GLR S++    ++ +  N   +K +  G               +TV 
Sbjct: 130 IRDRALFELIYSAGLRVSEAVTLSLEDIFFNEQLLKVRGKGGKERIVPFGAQAEERLTVY 189

Query: 237 LPDGFMKLLAMTPIGK----ETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKF 292
           L      LL              F+N+  +++         +     +GV    H +R  
Sbjct: 190 LKTARPLLLKPAHSENTETTGAVFLNHHGERLTRKGIWKRLQEIEQLSGVTTKIHTLRHS 249

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
            AT     GA    +    G  ++   + YT   D+
Sbjct: 250 YATHLLAGGADLRSVQCLLGHASIATTQIYTHIEDK 285


>gi|34499125|ref|NP_903340.1| integrase/recombinase [Chromobacterium violaceum ATCC 12472]
 gi|34104976|gb|AAQ61332.1| integrase/recombinase [Chromobacterium violaceum ATCC 12472]
          Length = 295

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 47/272 (17%), Positives = 91/272 (33%), Gaps = 21/272 (7%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRKITT--KHIRSGVES--RKHTPSSAIQFLTSMR 141
            L+ N+  ++     ++  +  +      T     +   + +      P++  +  +++R
Sbjct: 20  GLSQNTLAAYRRDLSKLAARLAERGVSLETATLADLEQALLAGVASEKPATRARLTSALR 79

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFE 197
             ++   R      +P   +  PK+     +  ++ D++            G + R   E
Sbjct: 80  RYYQHLSRNGVRQDDPSARLASPKQGLRLPKSMSEMDVEALLDAPDVETPLGLRDRAMLE 139

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDGFMKLLAM--------- 247
            L  SGLR S+     +  L      +KT   G+    V L +     L           
Sbjct: 140 VLYASGLRVSELVGMTLNQLNLLDGVVKTMGKGSKERLVPLGEIAQDWLLRYLKEARPLL 199

Query: 248 -TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAH 305
                 +  F+   K  M            A + G+ K S H +R   AT   + GA   
Sbjct: 200 LAGQPCDAVFVTQRKAGMTRQMAWHLITQYAGRQGLAKVSPHVLRHAFATHLVNHGADLR 259

Query: 306 ELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
            +    G   +   + YT  A R RL   ++R
Sbjct: 260 VVQLLLGHADISTTQIYTHVA-RERLKQLHAR 290


>gi|119026091|ref|YP_909936.1| tyrosine recombinase xerD [Bifidobacterium adolescentis ATCC 15703]
 gi|154488864|ref|ZP_02029713.1| hypothetical protein BIFADO_02172 [Bifidobacterium adolescentis
           L2-32]
 gi|118765675|dbj|BAF39854.1| tyrosine recombinase xerD [Bifidobacterium adolescentis ATCC 15703]
 gi|154083001|gb|EDN82046.1| hypothetical protein BIFADO_02172 [Bifidobacterium adolescentis
           L2-32]
          Length = 317

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 45/296 (15%), Positives = 100/296 (33%), Gaps = 42/296 (14%)

Query: 71  LKWLISEYRKSAH-WGSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTK---HIRSGV 123
           ++ LI ++         LA  +  +++S   +    +   G  D   +TT+      + +
Sbjct: 4   IERLIDQFLAYIDVERGLAKATVRAYDSDLRKYNGWLATQGIQDLNAVTTQDVERYIAFL 63

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
           +    +  S  + L S+    ++A+ +  V+ +    V+ PK  T      T +++    
Sbjct: 64  DDSGESARSKARRLASIHAFHRFALNEHVVSNDVAAQVKAPKGATTLPDVLTVDEVASLL 123

Query: 184 SFWSEGS------------------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225
                                    + +   EF+  +G R S++C A +  +       +
Sbjct: 124 DAIPVSQNRPQSEGMADMPDDPAMLRDKALLEFMYATGARVSEACGANLDDVDLESNVAR 183

Query: 226 TQKTGTIIT-VELPDGFMKLLAM--------------TPIGKETFFINNDKQKMNATQFS 270
               G+    V +     + +A                P  +   F+N   ++++     
Sbjct: 184 LMGKGSKQRLVPVGSYACEAIARYLKNGRPQLESKAKGPTERRALFLNKRGKRLSRQSVW 243

Query: 271 IWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              +A   +A ++K    H +R   AT     GA    +    G  +V   + YT 
Sbjct: 244 EIIRAAGERAHIDKPLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTH 299


>gi|312130041|ref|YP_003997381.1| integrase family protein [Leadbetterella byssophila DSM 17132]
 gi|311906587|gb|ADQ17028.1| integrase family protein [Leadbetterella byssophila DSM 17132]
          Length = 282

 Score =  123 bits (308), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 46/259 (17%), Positives = 95/259 (36%), Gaps = 15/259 (5%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMR 141
             L+ ++  S++   +Q+       D  +I+T+ +R+ V S         S  + L S R
Sbjct: 13  RRLSPHTIKSYKLDLEQLHTFLNGIDPSQISTEDLRAWVVSLSEDGLENRSINRKLASAR 72

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW----TKEDMQQFK-SFWSEGSQPRLAF 196
             F +  R++ ++ NP   ++  K             T++  +Q + +   EG + +L  
Sbjct: 73  AFFTFLQRKKIISQNPADLIKSLKTPKPLPVFLEERNTQDLFEQLEFTEDFEGLRDKLLL 132

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT----PIGK 252
           E L  +G+R S+     V+ L+N+   +   K      + L      L+       P   
Sbjct: 133 ELLYGTGIRLSELISIQVKDLENDRVKV-LGKRSKYRIIPLHRTLQDLIKRYLELHPKND 191

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMAT 310
               + +  + +         K    +       S H +R   AT   + GA  + +   
Sbjct: 192 THLLLTDKGEALYPVFVQRKVKHYLQQISTLTKTSPHVLRHTFATHLLNRGADLNAIKEL 251

Query: 311 YGWKTVDQAETYTKGADRI 329
            G   +   + YT  + + 
Sbjct: 252 LGHANLSATQIYTHNSIQK 270


>gi|150008883|ref|YP_001303626.1| tyrosine type site-specific recombinase [Parabacteroides distasonis
           ATCC 8503]
 gi|301311928|ref|ZP_07217850.1| integrase/recombinase XerC [Bacteroides sp. 20_3]
 gi|149937307|gb|ABR44004.1| tyrosine type site-specific recombinase [Parabacteroides distasonis
           ATCC 8503]
 gi|300830030|gb|EFK60678.1| integrase/recombinase XerC [Bacteroides sp. 20_3]
          Length = 302

 Score =  123 bits (308), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 52/276 (18%), Positives = 103/276 (37%), Gaps = 25/276 (9%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS-----GDFDYRKITTKHIRSGV---E 124
           LI ++     +  + +  +  ++    DQ  R       G F+  +I +  +RS +    
Sbjct: 2   LIDDFLNYLRYERNYSNYTIGAYSKDLDQFQRYVREHREGVFNPGEIDSDFVRSWIVSLM 61

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
             K +P S  + L+S++  FK+ +++  V+ NP   V  PK K          +++    
Sbjct: 62  DEKLSPVSVNRKLSSLKSFFKFLMKRGIVSANPLRLVSGPKTKKPLPYFIKDSELEALLD 121

Query: 185 FWS-----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELP 238
                   EG + RL  E L  +G+R S+        +      +K T K      +   
Sbjct: 122 GDGFDEDFEGVRNRLVIEMLYDTGMRRSELIGIRNVDVDYEAMQVKVTGKRNKQRLIPFA 181

Query: 239 DGFMKLLAMTP--------IGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHG 288
           +G   L+               E FF+  +  +++        K + ++  +   +S H 
Sbjct: 182 EGLKNLMLAYTEVRDREVEAAGEWFFVRKNGNQLSTGIVYNIVKKQLSEIPMLAKRSPHV 241

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +R   AT   + GA  + +    G  ++     YT 
Sbjct: 242 LRHSFATSMLNNGAELNAVKDLLGHSSLASTSVYTH 277


>gi|15804400|ref|NP_290440.1| site-specific tyrosine recombinase XerC [Escherichia coli O157:H7
           EDL933]
 gi|15833995|ref|NP_312768.1| site-specific tyrosine recombinase XerC [Escherichia coli O157:H7
           str. Sakai]
 gi|168750377|ref|ZP_02775399.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4113]
 gi|168753708|ref|ZP_02778715.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4401]
 gi|168763936|ref|ZP_02788943.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4501]
 gi|168768092|ref|ZP_02793099.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4486]
 gi|168775638|ref|ZP_02800645.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4196]
 gi|168780710|ref|ZP_02805717.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4076]
 gi|168801125|ref|ZP_02826132.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC508]
 gi|195938100|ref|ZP_03083482.1| site-specific tyrosine recombinase XerC [Escherichia coli O157:H7
           str. EC4024]
 gi|208806813|ref|ZP_03249150.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4206]
 gi|208813099|ref|ZP_03254428.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4045]
 gi|208821301|ref|ZP_03261621.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4042]
 gi|209397621|ref|YP_002273328.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4115]
 gi|217326194|ref|ZP_03442278.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. TW14588]
 gi|254795807|ref|YP_003080644.1| site-specific tyrosine recombinase XerC [Escherichia coli O157:H7
           str. TW14359]
 gi|261225585|ref|ZP_05939866.1| site-specific tyrosine recombinase [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261255631|ref|ZP_05948164.1| site-specific tyrosine recombinase [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291285225|ref|YP_003502043.1| Tyrosine recombinase xerC [Escherichia coli O55:H7 str. CB9615]
 gi|34222932|sp|Q8X4T6|XERC_ECO57 RecName: Full=Tyrosine recombinase xerC
 gi|254799334|sp|B5YY58|XERC_ECO5E RecName: Full=Tyrosine recombinase xerC
 gi|12518679|gb|AAG59004.1|AE005612_7 site-specific recombinase, acts on cer sequence of ColE1, effects
           chromosome segregation at cell division [Escherichia
           coli O157:H7 str. EDL933]
 gi|13364217|dbj|BAB38164.1| site-specific recombinase XerC [Escherichia coli O157:H7 str.
           Sakai]
 gi|187768906|gb|EDU32750.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4196]
 gi|188015455|gb|EDU53577.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4113]
 gi|189001561|gb|EDU70547.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4076]
 gi|189358976|gb|EDU77395.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4401]
 gi|189362670|gb|EDU81089.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4486]
 gi|189365973|gb|EDU84389.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4501]
 gi|189376684|gb|EDU95100.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC508]
 gi|208726614|gb|EDZ76215.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4206]
 gi|208734376|gb|EDZ83063.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4045]
 gi|208741424|gb|EDZ89106.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4042]
 gi|209159021|gb|ACI36454.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4115]
 gi|209753248|gb|ACI74931.1| putative phosphatase [Escherichia coli]
 gi|209753250|gb|ACI74932.1| putative phosphatase [Escherichia coli]
 gi|209753252|gb|ACI74933.1| putative phosphatase [Escherichia coli]
 gi|209753254|gb|ACI74934.1| putative phosphatase [Escherichia coli]
 gi|209753256|gb|ACI74935.1| putative phosphatase [Escherichia coli]
 gi|217322415|gb|EEC30839.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. TW14588]
 gi|254595207|gb|ACT74568.1| site-specific tyrosine recombinase [Escherichia coli O157:H7 str.
           TW14359]
 gi|290765098|gb|ADD59059.1| Tyrosine recombinase xerC [Escherichia coli O55:H7 str. CB9615]
 gi|320191096|gb|EFW65746.1| Tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC1212]
 gi|320639294|gb|EFX08916.1| site-specific tyrosine recombinase XerC [Escherichia coli O157:H7
           str. G5101]
 gi|320644679|gb|EFX13729.1| site-specific tyrosine recombinase XerC [Escherichia coli O157:H-
           str. 493-89]
 gi|320650004|gb|EFX18507.1| site-specific tyrosine recombinase XerC [Escherichia coli O157:H-
           str. H 2687]
 gi|320655350|gb|EFX23292.1| site-specific tyrosine recombinase XerC [Escherichia coli O55:H7
           str. 3256-97 TW 07815]
 gi|320660976|gb|EFX28419.1| site-specific tyrosine recombinase XerC [Escherichia coli O55:H7
           str. USDA 5905]
 gi|320666100|gb|EFX33114.1| site-specific tyrosine recombinase XerC [Escherichia coli O157:H7
           str. LSU-61]
 gi|326344267|gb|EGD68027.1| Tyrosine recombinase XerC [Escherichia coli O157:H7 str. 1125]
 gi|326347905|gb|EGD71619.1| Tyrosine recombinase XerC [Escherichia coli O157:H7 str. 1044]
          Length = 298

 Score =  123 bits (308), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 41/270 (15%), Positives = 91/270 (33%), Gaps = 20/270 (7%)

Query: 75  ISEYRKSAH-WGSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGVESRKHTP 130
           +  Y +       L+  + ++++   + II    ++G  ++++     +R+     +   
Sbjct: 8   VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQNWQQCDAAMVRNFAVRSRRKG 67

Query: 131 SSAIQF---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186
             A      L+++R  F W V Q  +  NP   V  PK      +    +D+ +      
Sbjct: 68  LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKTPRHLPKNIDVDDINRLLDIDI 127

Query: 187 --SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMK 243
                 + R   E +  +GLR S+     ++HL           K      + +    + 
Sbjct: 128 NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNALS 187

Query: 244 LLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSA 294
            +              +  F++   ++++A      F     K G+N     H +R   A
Sbjct: 188 WIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFA 247

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324
           T   ++      +    G   +   + YT 
Sbjct: 248 THMLESSGDLRGVQELLGHANLSTTQIYTH 277


>gi|304398153|ref|ZP_07380028.1| tyrosine recombinase XerC [Pantoea sp. aB]
 gi|304354439|gb|EFM18811.1| tyrosine recombinase XerC [Pantoea sp. aB]
          Length = 301

 Score =  123 bits (308), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 38/259 (14%), Positives = 85/259 (32%), Gaps = 19/259 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDY---RKITTKHIRSGVESRKHTPSSAIQF---LT 138
             L+  ++ S+      ++  + +       ++    +RS     +    SA      L+
Sbjct: 20  RQLSPLTQSSYARQLAALVAIADEMKLSSWAQLEPAQVRSMAARSRRAGLSASSLALRLS 79

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLA 195
           ++R    W V Q  ++ NP   V  P++     +    +++ Q            + R  
Sbjct: 80  ALRSFLDWQVSQGLLSANPAKGVMTPRKARHLPKNIDVDEVNQLLEIDLDDPLAVRDRAM 139

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLAMTPIGKET 254
            E +   GLR S+      +H+  +        K      V +    +  +      +ET
Sbjct: 140 LEVMYGGGLRLSELVNMDCRHVDLDSGEVWVVGKGSKERRVPIGRTAVTWIQHWLPLRET 199

Query: 255 F-------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAH 305
           F       F++    +++       F     + G+  +   H +R   AT   ++     
Sbjct: 200 FGAQDDALFLSTRGNRISPRNVQKRFAEWGIRQGLASHIHPHKLRHSFATHLLESSGDLR 259

Query: 306 ELMATYGWKTVDQAETYTK 324
            +    G   +   + YT 
Sbjct: 260 AVQELLGHANLSTTQIYTH 278


>gi|23335402|ref|ZP_00120638.1| COG4974: Site-specific recombinase XerD [Bifidobacterium longum
           DJO10A]
 gi|227547607|ref|ZP_03977656.1| integrase/recombinase XerD family protein [Bifidobacterium longum
           subsp. infantis ATCC 55813]
 gi|239621212|ref|ZP_04664243.1| tyrosine recombinase xerD [Bifidobacterium longum subsp. infantis
           CCUG 52486]
 gi|312132535|ref|YP_003999874.1| integrase/recombinase [Bifidobacterium longum subsp. longum BBMN68]
 gi|317482508|ref|ZP_07941524.1| tyrosine recombinase XerD [Bifidobacterium sp. 12_1_47BFAA]
 gi|322689456|ref|YP_004209190.1| recombinase [Bifidobacterium longum subsp. infantis 157F]
 gi|227211862|gb|EEI79758.1| integrase/recombinase XerD family protein [Bifidobacterium longum
           subsp. infantis ATCC 55813]
 gi|239515673|gb|EEQ55540.1| tyrosine recombinase xerD [Bifidobacterium longum subsp. infantis
           CCUG 52486]
 gi|291516706|emb|CBK70322.1| tyrosine recombinase XerD subunit [Bifidobacterium longum subsp.
           longum F8]
 gi|311773469|gb|ADQ02957.1| probable integrase/recomBinase [Bifidobacterium longum subsp.
           longum BBMN68]
 gi|316916060|gb|EFV37466.1| tyrosine recombinase XerD [Bifidobacterium sp. 12_1_47BFAA]
 gi|320460792|dbj|BAJ71412.1| recombinase [Bifidobacterium longum subsp. infantis 157F]
          Length = 311

 Score =  123 bits (308), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 43/271 (15%), Positives = 91/271 (33%), Gaps = 31/271 (11%)

Query: 85  GSLAVNSRISFE----SYFDQIIRKSGDFD--YRKITTKHIRSGVESRKHTPSSAIQFLT 138
             LA  +  ++E     Y D +  +         K   +   + ++    +  S  + L 
Sbjct: 23  RGLATATVTAYESDIAKYIDWLETRGIHEPDAITKQDVEDYIAALDQAGESARSKARRLA 82

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG-------SQ 191
           S+    ++A+ Q  V  +   +V+ PK  +      T +++ +     + G        +
Sbjct: 83  SIHEFHRFALGQHAVTADVSAAVKAPKGASTLPDVLTVDEVTRLLDAAAVGGSTDPVVLR 142

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPD----------- 239
            +   EF+  +G R S++  A +  +  +   +    K      V L             
Sbjct: 143 DKALLEFMYATGCRVSEATGANLDDIDLDEHIARLMGKGSKQRLVPLGSYACRAITAYLN 202

Query: 240 ----GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFS 293
                  +  +     +   F+N   ++++        KA   +AG+ K    H +R   
Sbjct: 203 AGRGELEQRSSAKIPERRALFLNKRGKRISRQSVWEIVKATGERAGITKPLHPHTLRHSF 262

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324
           AT     GA    +    G  +V   + YT 
Sbjct: 263 ATHLIQGGADVRTVQELLGHASVTTTQIYTH 293


>gi|256379436|ref|YP_003103096.1| tyrosine recombinase XerD [Actinosynnema mirum DSM 43827]
 gi|255923739|gb|ACU39250.1| tyrosine recombinase XerD [Actinosynnema mirum DSM 43827]
          Length = 299

 Score =  123 bits (308), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 46/251 (18%), Positives = 81/251 (32%), Gaps = 16/251 (6%)

Query: 89  VNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWA 147
            +       Y   +     G     +       +G+       SSA + L ++R L ++A
Sbjct: 29  DSYARDLRRYLAHLESAGLGLDAVTEAVVGDFLAGLRESGLAASSAARTLVAVRGLHRFA 88

Query: 148 VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLAFEFLLYSGL 204
            R+   A +P   V+ P       +     D+ +            + R   E L  +G 
Sbjct: 89  HREGLTAADPAKDVQPPAAPRRLPKALPVADVLRLLDTAGDTPAALRDRALLELLYSTGA 148

Query: 205 RCSDSCRAGVQHLQN-NIFSIKTQKTGTIITVELPDGFMKLLAM---------TPIGKET 254
           R S+     V  +      ++   K G    V +    +  +              G   
Sbjct: 149 RISEVVGLDVDDVDAAERTALLDGKGGKQRVVPVGRPALAAVEAYLVRARPVLAKRGGPA 208

Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYG 312
            F+N    +++        K  A +AGV    S H +R   AT   +AGA    +    G
Sbjct: 209 LFLNARGGRLSRQSAWQVLKTAAERAGVAAEVSPHTLRHSFATHLLEAGADVRVVQELLG 268

Query: 313 WKTVDQAETYT 323
             +V   + YT
Sbjct: 269 HASVTTTQVYT 279


>gi|302338071|ref|YP_003803277.1| integrase family protein [Spirochaeta smaragdinae DSM 11293]
 gi|301635256|gb|ADK80683.1| integrase family protein [Spirochaeta smaragdinae DSM 11293]
          Length = 313

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 51/292 (17%), Positives = 103/292 (35%), Gaps = 23/292 (7%)

Query: 64  PRKKPTTLKWLISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYR-KITTKHIRS 121
           P  + + ++ L+  Y +      +L+  +  ++    D+  R   D     +++   +R 
Sbjct: 2   PETEKSEIRSLVDTYLRYLVAVRTLSPRTVDAYGVDLDRFCRFVEDEGCGLELSPSLVRR 61

Query: 122 GVESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
            V   K   +P+S  + L+S+R  +++AV+Q     NP  SV    R+       ++ + 
Sbjct: 62  FVAELKDALSPASCARALSSIRGFYRYAVKQGAAVSNPFASVRGKGRERRLPEVLSEVEA 121

Query: 180 QQFKSFWS---EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
            +  SF      G + +L  E L  +G R S++    +  +     ++K    G    + 
Sbjct: 122 SELLSFSENGFIGVRDKLLMELLYSTGARVSEAVGIDMLDIDTKKRTVKLLGKGDRQRIA 181

Query: 237 -------------LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
                        LP    ++ +      +  F+N   +++         +    +    
Sbjct: 182 YLGPQAMSALAAYLPYRRERVASDKKDAVQALFLNAHGERLTRRGAGFILRKHQERLASG 241

Query: 284 KS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           K    H  R   AT   D GA    +    G   +     YT      RL  
Sbjct: 242 KRLHPHLFRHSFATHLLDRGADIRTVQELLGHADLSTTGIYTH-VSLKRLQD 292


>gi|323964056|gb|EGB59546.1| tyrosine recombinase XerC [Escherichia coli M863]
 gi|327250661|gb|EGE62367.1| tyrosine recombinase XerC [Escherichia coli STEC_7v]
          Length = 298

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 43/270 (15%), Positives = 94/270 (34%), Gaps = 20/270 (7%)

Query: 75  ISEYRKSAH-WGSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGVESRKHTP 130
           +  Y +       L+  + ++++   + II    ++G   +++     +R+     +   
Sbjct: 8   VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDAAMVRNFAVRSRRKG 67

Query: 131 SSAIQF---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186
             A      L+++R  F W V Q  +  NP   V  PK      +    +D+ +      
Sbjct: 68  LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDINRLLDIDI 127

Query: 187 --SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT--------VE 236
                 + R   E +  +GLR S+     ++HL      +     G+           V 
Sbjct: 128 NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVA 187

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSA 294
             + ++ L  +     +  F++   ++++A      F     K G+N     H +R   A
Sbjct: 188 WIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFA 247

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324
           T   ++      +    G   +   + YT 
Sbjct: 248 THMLESSGDLRGVQELLGHANLSTTQIYTH 277


>gi|269958271|ref|YP_003328058.1| tyrosine recombinase [Anaplasma centrale str. Israel]
 gi|269848100|gb|ACZ48744.1| tyrosine recombinase [Anaplasma centrale str. Israel]
          Length = 312

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 46/293 (15%), Positives = 105/293 (35%), Gaps = 36/293 (12%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVESRKHTPS 131
           EY  S     ++ N+  S+ S  + +    G  + R +       +     + SR ++P+
Sbjct: 12  EYLVSGR--CVSPNTSSSYRSDLEDLAEFLGRRNLRMVDASAADLRAYVRSLNSRGYSPA 69

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS---- 187
           +  + + ++R L+ +      +  +P  +++  K      +  T +++ +          
Sbjct: 70  TISRRVAAIRGLYGFLYGDRIIDGDPAANLDSCKLGRPLPKVLTVDEVDKLLRAAGSDLS 129

Query: 188 -EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--------NNIFSIKTQKTGTIITVELP 238
            EG +       L  SG+R S+    G   ++        +    +   K G    + L 
Sbjct: 130 VEGRRTAAIVNILYSSGVRISELINLGFYDIESMLKEQRSDVGHLVIKGKAGRERLILLN 189

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKM------------NATQFSIWFKAKATKAGVN--- 283
           +  +  +      ++ F +    +              +  +     KA A  AGV+   
Sbjct: 190 EVAIASIVAYLAVRDHFIVGQKSESRWLFPGAKFDQCISRQRVGQLLKALAIVAGVDPKR 249

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKN 335
            S H +R   AT   + G+    +    G  ++   + YT  A DR++  ++ 
Sbjct: 250 ISPHKLRHSFATHLLNNGSNVVFIQKMLGHASLSTTQIYTYVANDRLKEALQT 302


>gi|172034831|ref|YP_001798608.1| integrase/recombinase [Cyanothece sp. ATCC 51142]
 gi|171701595|gb|ACB54574.1| probable integrase/recombinase [Cyanothece sp. ATCC 51142]
          Length = 290

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 47/252 (18%), Positives = 100/252 (39%), Gaps = 13/252 (5%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES---RKHTPSSAIQFLTSMR 141
             L + ++ ++    +Q +    +     +  + +   V+    + ++ +S    ++ ++
Sbjct: 29  SGLRLGTQKTYARTVNQFLGFV-EKPLVNVLLEDLTRWVDLLFIKDYSQNSIALKISIIK 87

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGI-RPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200
            LF +A +  Y+ +N   +V+ P        R   + +++       EG + R     + 
Sbjct: 88  SLFSYAWKIGYLPLNIAKAVKAPSSVNALHERILEQPEVKALIEAAKEG-RDRTILTLIY 146

Query: 201 YSGLRCSDSCRAGVQHLQ---NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET--F 255
            +GLR +++     + L+       +  T K G + TV + D   K L   P  ++T   
Sbjct: 147 ATGLRATEALSINWRDLRPRKQGGQATITGKGGKVRTVLISDNLWKELKKLPRSQKTEAV 206

Query: 256 FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGW 313
           F      +++  Q     K  A KAG+N+  S H +R   A  S + G     LM + G 
Sbjct: 207 FTTRFGNRLDRHQLHRIVKKTAEKAGINEHTSTHWLRHAHACHSLENGCDIDVLMRSLGH 266

Query: 314 KTVDQAETYTKG 325
            ++     Y   
Sbjct: 267 SSLTITSKYLHA 278


>gi|196047758|ref|ZP_03114951.1| tyrosine recombinase XerC [Bacillus cereus 03BB108]
 gi|196021406|gb|EDX60120.1| tyrosine recombinase XerC [Bacillus cereus 03BB108]
          Length = 299

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 44/272 (16%), Positives = 96/272 (35%), Gaps = 26/272 (9%)

Query: 85  GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLT 138
            + +  +  S+++  +  +    + G   +  IT   +R  +      K    S  + ++
Sbjct: 18  RNYSKYTIASYQNDLEHFVQFMEREGISSFLDITYADVRLYLTTLHDEKLARKSVARKVS 77

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194
           S+R L+++ +R+ Y   NP      PK++    +    E++++           G + + 
Sbjct: 78  SLRSLYRFLMREGYRKDNPFALASLPKKELSIPKFLYAEELEELFEVSDTETPLGQRNQA 137

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE------------LPDGF 241
             E +  +G+R S+     +  +   + +I    K      +             + +G 
Sbjct: 138 LLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQRYIPFGSYAQDALITYIENGR 197

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
            +L   T       F+N     + +            KA +    S H +R   AT   D
Sbjct: 198 KQLAEKTEEQSHMVFLNAKGTPLTSRGVRYVLNELIKKASLTMRISPHMLRHTFATHMLD 257

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            GA    +    G + +   + YT    + RL
Sbjct: 258 EGADLRTVQELLGHENLSATQIYTH-VSKERL 288


>gi|229174497|ref|ZP_04302029.1| Tyrosine recombinase xerC [Bacillus cereus MM3]
 gi|228609057|gb|EEK66347.1| Tyrosine recombinase xerC [Bacillus cereus MM3]
          Length = 299

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 43/272 (15%), Positives = 96/272 (35%), Gaps = 26/272 (9%)

Query: 85  GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLT 138
            + +  +  S+++  +  +    + G   +  +T   +R  +      K    S  + ++
Sbjct: 18  RNYSKYTIASYQNDLEHFVQFMEREGISSFLDVTYADVRLYLTTLHDEKLARKSVARKVS 77

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRL 194
           S+R L+++ +R+ Y   NP      PK++    +    E++++           G + + 
Sbjct: 78  SLRSLYRFLMREGYRKDNPFALASLPKKELSIPKFLYAEELEELFEVADTETPLGQRNQA 137

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE------------LPDGF 241
             E +  +G+R S+     +  +   + +I    K      +             + +G 
Sbjct: 138 LLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQRYIPFGSYAQDALITYIENGR 197

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
            +L   T       F+N     + +            KA +    S H +R   AT   D
Sbjct: 198 KQLAHKTEEHSHMVFLNAKGTPLTSRGVRYVLNELIKKASLTMRISPHMLRHTFATHMLD 257

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            GA    +    G + +   + YT    + RL
Sbjct: 258 EGADLRTVQELLGHENLSTTQIYTH-VSKERL 288


>gi|160884990|ref|ZP_02065993.1| hypothetical protein BACOVA_02986 [Bacteroides ovatus ATCC 8483]
 gi|156109340|gb|EDO11085.1| hypothetical protein BACOVA_02986 [Bacteroides ovatus ATCC 8483]
          Length = 405

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 52/226 (23%), Positives = 91/226 (40%), Gaps = 22/226 (9%)

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR--PWTKEDMQQFKS 184
           +     A+ + +  + +  +AV  + +A NPC  V   K   + +R    + E+MQ   S
Sbjct: 180 RSKGEGALDYYSKFKKVINYAVDNDVIAKNPCKGV-VCKCDKQVLRKDVLSLEEMQALIS 238

Query: 185 FWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTG-----TIITV 235
              +   P  R AF F LY+G+R  D       ++   N I S +  KT      + + +
Sbjct: 239 THYDNENPEIRRAFIFCLYTGIRFCDVQDLKYSNVDYSNKILSFEQNKTKGHSANSGVVI 298

Query: 236 ELPDGFMKLLAMTPIGK---ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290
            L D  ++L+      +   ET F     +  +AT      +    +AG+ K  + H  R
Sbjct: 299 PLNDDLLQLIGEPHTEQYEQETIF-----RLPSATMCLKALRRWTKRAGITKHITWHCAR 353

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
              A    + GA    + +  G   +   E YT+  D ++    NS
Sbjct: 354 HSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVDSLKEAAINS 399


>gi|170769828|ref|ZP_02904281.1| tyrosine recombinase XerC [Escherichia albertii TW07627]
 gi|170121266|gb|EDS90197.1| tyrosine recombinase XerC [Escherichia albertii TW07627]
          Length = 298

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 41/270 (15%), Positives = 90/270 (33%), Gaps = 20/270 (7%)

Query: 75  ISEYRKSAH-WGSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGVESRKHTP 130
           +  Y +       L+  + ++++   + II    ++G   +++     +R+     +   
Sbjct: 8   VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDAAMVRNFAVRSRRKG 67

Query: 131 SSAIQF---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186
             A      L+++R  F W V Q  +  NP   V  PK      +    +D+ +      
Sbjct: 68  LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDINRLLDIDI 127

Query: 187 --SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMK 243
                 + R   E +  +GLR S+     ++HL           K      + +    + 
Sbjct: 128 NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVA 187

Query: 244 LLAMTP-------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSA 294
            +              +  F++   ++++A      F     K G+N     H +R   A
Sbjct: 188 WIEHWFDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFA 247

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324
           T   ++      +    G   +   + YT 
Sbjct: 248 THMLESSGDLRGVQELLGHANLSTTQIYTH 277


>gi|302389546|ref|YP_003825367.1| integrase family protein [Thermosediminibacter oceani DSM 16646]
 gi|302200174|gb|ADL07744.1| integrase family protein [Thermosediminibacter oceani DSM 16646]
          Length = 310

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 46/284 (16%), Positives = 95/284 (33%), Gaps = 33/284 (11%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGV---- 123
            K+ I ++     + +L+  +   +E    +       +   D   IT + I++ +    
Sbjct: 6   FKFAIQDFLDDRKFKNLSPETLKGYEITLKEFHNYCTDNNLIDTSDITPRVIKNYLIHCQ 65

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI--NPCLSVERPKRKTEGIRPWTKEDMQQ 181
             R + P +    + ++++ F +    E      NP   +   K   + I  +T   ++Q
Sbjct: 66  NERSNNPVTLNHKIRNLKIFFNYLEEIEIYDEKNNPAKPIPYLKEDVK-IEVFTDYQIRQ 124

Query: 182 FKSFWSE---------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTG 230
             +++             +       LL +G+R  +      +H+   N + +I   K  
Sbjct: 125 MLTYYRRLKTRDKAFWAYRDYTIIVTLLGTGIRLGELVNLQWRHIDFVNQVMTI-FGKKR 183

Query: 231 TIITVELPDGFMKLLAMTPIG--------KETFFINNDKQKMNATQFSIWFKAKATKAG- 281
              ++ L +  +K LA   +          +  F+N+  + M A      FK        
Sbjct: 184 IQRSIPLTEKLVKELAEFKVFCERYFGKLNDYVFVNSKNEPMTADAVKCMFKRLKEIMNF 243

Query: 282 --VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
             V  SAH  R   A      G     L    G   ++    Y 
Sbjct: 244 RDVRLSAHTFRHTFAHRFLMNGGDVFSLQKILGHSKIEMTMRYV 287


>gi|332159818|ref|YP_004296395.1| site-specific tyrosine recombinase XerC [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|318607639|emb|CBY29137.1| tyrosine recombinase XerC [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|325664048|gb|ADZ40692.1| site-specific tyrosine recombinase XerC [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|330862565|emb|CBX72719.1| tyrosine recombinase xerC [Yersinia enterocolitica W22703]
          Length = 303

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 42/259 (16%), Positives = 89/259 (34%), Gaps = 19/259 (7%)

Query: 85  GSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLT 138
             L+  +  S+      ++    + G   ++ +    +RS V   K      SS    L+
Sbjct: 23  RQLSPLTITSYRRQLQALMEMGEQMGLAHWQTLDAAQVRSLVSRSKRAGLHSSSLALRLS 82

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLA 195
           ++R    W V Q  +  NP   V  P+      +    +++ +            + R  
Sbjct: 83  ALRSFLNWLVSQGVLQANPAKGVSTPRSGRHLPKNIDVDEVDKLLDIDLNDPLAVRDRAM 142

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI--------ITVELPDGFMKLLAM 247
            E +  +GLR S+      +H+      +     G+           V+  + +++L  +
Sbjct: 143 LEVMYGAGLRLSEMVGMNCKHVDLASGDVWVMGKGSKERKVPIGKTAVKWLEHWLELREL 202

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAH 305
                +  F+ N  ++++A      F     K GV  +   H +R   AT   ++     
Sbjct: 203 FEPQDDAIFLANTGKRISARNVQKRFAEWGVKQGVSSHIHPHKLRHSFATHMLESSGDLR 262

Query: 306 ELMATYGWKTVDQAETYTK 324
            +    G   +   + YT 
Sbjct: 263 AVQELLGHANLTTTQIYTH 281


>gi|256841123|ref|ZP_05546630.1| tyrosine recombinase XerC [Parabacteroides sp. D13]
 gi|256736966|gb|EEU50293.1| tyrosine recombinase XerC [Parabacteroides sp. D13]
          Length = 302

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 53/276 (19%), Positives = 103/276 (37%), Gaps = 25/276 (9%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS-----GDFDYRKITTKHIRSGV---E 124
           LI ++     +  + +  +  ++    DQ  R       G FD  +I +  +RS +    
Sbjct: 2   LIDDFLNYLRYERNYSNYTIGAYSKDLDQFQRYVREHREGVFDPGEIDSDFVRSWIVCLM 61

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
             K +P S  + L+S++  FK+ +++  V+ NP   V  PK K          +++    
Sbjct: 62  DEKFSPVSVNRKLSSLKSFFKFLMKRGIVSANPLRLVSGPKTKKPLPCFIKDSELEALLD 121

Query: 185 FWS-----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELP 238
                   EG + RL  E L  +G+R S+        +      +K T K      +   
Sbjct: 122 GDGFDEDFEGVRNRLVIEMLYDTGMRRSELIGIRNVDVDYEAMQVKVTGKRNKQRLIPFA 181

Query: 239 DGFMKLLAMTP--------IGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHG 288
           +G   L+               E FF+  +  +++        K + ++  +   +S H 
Sbjct: 182 EGLKNLMLAYTEVRDREVEAAGEWFFVRKNGNQLSTGIVYNIVKKQLSEIPMLAKRSPHV 241

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +R   AT   + GA  + +    G  ++     YT 
Sbjct: 242 LRHSFATSMLNNGAELNAVKDLLGHSSLASTSVYTH 277


>gi|126651787|ref|ZP_01723989.1| site-specific tyrosine recombinase XerC [Bacillus sp. B14905]
 gi|126591465|gb|EAZ85572.1| site-specific tyrosine recombinase XerC [Bacillus sp. B14905]
          Length = 355

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 53/285 (18%), Positives = 96/285 (33%), Gaps = 41/285 (14%)

Query: 85  GSLAVNSRISFESYFDQIIR---------KSGDFDYRKITTKHIRSGVE----------- 124
              +  +R  +E       R            +     I T  I    +           
Sbjct: 56  KGKSQRTRKEYEYDLTLFFRFHTAVQEDLDIENLAVIDIATITIEEIRDITLEDLYYFME 115

Query: 125 ----SRKHTPSSAIQFLTSMRVLFKWAV-RQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
                R ++ +S  + + +++  FK+   ++  +  NP   +E PK   +       ++ 
Sbjct: 116 YCEVQRGNSAASRARKVATLKSFFKYLKGKRRLIEENPAEELETPKIGRKRPIYMNFQEA 175

Query: 180 QQFKSFWSEG---SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
            QF           +      F L  G+R ++ C+  +  +Q    ++   K     TV 
Sbjct: 176 TQFIDGIPANQASPRNYCMMMFFLNLGIRVTELCQLNITSIQGRHLTV-VGKGNKERTVY 234

Query: 237 LPDGFMKLLA------MTP---IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--- 284
           L D  M+ LA       TP    G E  F++    +      +   K    ++G+ K   
Sbjct: 235 LNDSCMQALADYENSGKTPYKGNGDEPLFVSQKGTRFTRQTVAKIVKRINQQSGLQKERL 294

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           + H +R  SAT+   AGA    L    G  +V   + YT   D  
Sbjct: 295 TPHKLRHTSATMMYKAGADIRSLQHILGHSSVATTQIYTHIEDEQ 339


>gi|86133261|ref|ZP_01051843.1| phage integrase family protein [Polaribacter sp. MED152]
 gi|85820124|gb|EAQ41271.1| phage integrase family protein [Polaribacter sp. MED152]
          Length = 385

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 48/275 (17%), Positives = 107/275 (38%), Gaps = 16/275 (5%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES----RK 127
           K L++ +         + ++  ++  +    I          +  + +   +E     R 
Sbjct: 91  KKLLNGFYLYMKGKRYSESTLKTYTFFIADFINFHSKKACSDLDNRDVELFIEKVFIERN 150

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           ++ SS  QF++++++   +    +       + + RPK+  +     ++E++ +  S  +
Sbjct: 151 YSVSSQRQFISALKIFTNYYPSTKIND----IELTRPKKSKKLPSVLSQEEVLRIISVTT 206

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
              + R     L   GLR S+     ++  H++     +K+ K      V L + FM LL
Sbjct: 207 -NLKHRAIIALLYSCGLRISELINLKLKDFHIERKQLIVKSGKGRKDRYVSLAESFMPLL 265

Query: 246 AM---TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
                +   KE F    + +K +A+    + K    KAG+ +  + H +R   AT   + 
Sbjct: 266 KNYYYSYEPKEFFVEGMNGEKYSASSVRAFLKKSCKKAGIQRAVTPHTLRHSYATHLLEN 325

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335
           G     + +  G    +    YT    +  + I+N
Sbjct: 326 GVDIRYIQSLLGHSRPETTMIYTHVKRKDLMQIQN 360


>gi|194434030|ref|ZP_03066300.1| tyrosine recombinase XerC [Shigella dysenteriae 1012]
 gi|194417688|gb|EDX33787.1| tyrosine recombinase XerC [Shigella dysenteriae 1012]
 gi|320178102|gb|EFW53082.1| Tyrosine recombinase XerC [Shigella boydii ATCC 9905]
 gi|332084672|gb|EGI89860.1| tyrosine recombinase XerC [Shigella boydii 5216-82]
 gi|332084963|gb|EGI90145.1| tyrosine recombinase XerC [Shigella dysenteriae 155-74]
          Length = 298

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 45/272 (16%), Positives = 92/272 (33%), Gaps = 24/272 (8%)

Query: 75  ISEYRKSAH-WGSLAVNSRISFESYFDQII--------RKSGDFDYRKITTKHIRSGVES 125
           +  Y +       L+  + ++++   + II        +     D   +    +RS    
Sbjct: 8   VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLKNWQQCDVTMVRNFAVRSRR-- 65

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +    +S    L+++R  F W V Q  +  NP   V  PK      +    +DM +    
Sbjct: 66  KGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDI 125

Query: 186 W---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-------- 234
                   + R   E +  +GLR S+     ++HL      +     G+           
Sbjct: 126 DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNA 185

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKF 292
           V   + ++ L  +     +  F++   ++++A      F     K G+N     H +R  
Sbjct: 186 VAWIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHS 245

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324
            AT   ++      +    G   +   + YT 
Sbjct: 246 FATHMLESSGDLRGVQELLGHANLSTTQIYTH 277


>gi|325278828|ref|YP_004251370.1| integrase family protein [Odoribacter splanchnicus DSM 20712]
 gi|324310637|gb|ADY31190.1| integrase family protein [Odoribacter splanchnicus DSM 20712]
          Length = 409

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 56/249 (22%), Positives = 104/249 (41%), Gaps = 24/249 (9%)

Query: 92  RISFESYFDQIIRKSG--DFDYRKITTKHIRSG----VESRKHTPSSAIQFLTSMRVLFK 145
           +  +    + I ++    D   +K+  + I +     +  RK  P++  + L  +  + K
Sbjct: 138 KDVYNHTINFIKKQYNMSDIPLKKLDYQFIAAFQQYLLTDRKQIPNTVNKTLQKVIEVAK 197

Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA-----FEFLL 200
           +AV+  Y+  NP  + ER K  T+ I   T E+++Q +++    +Q RL      + F +
Sbjct: 198 YAVKCGYLEKNPFNAYERLKVGTKSITFLTDEEIEQLENYH--FTQHRLEQVKDLYLFSV 255

Query: 201 YSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF 255
           Y+GL   ++      HL          ++  QKTG  + + L     K+L+    G E  
Sbjct: 256 YTGLAYREAANLCKAHLIKGLDNEIWINMTRQKTGNSMEIPLLPPAQKILSKYITGNEP- 314

Query: 256 FINNDKQKM-NATQFSIWFKAKATKAGVNK--SAHGVRKFSA-TISADAGATAHELMATY 311
            IN     M +  + + + K  A   G+NK  + H  RK  A TI  +       +    
Sbjct: 315 -INKPLLPMISNQRMNSYLKEIAEILGINKRLTTHTARKTFASTILLNNDVPIEIVSKLL 373

Query: 312 GWKTVDQAE 320
           G  ++   E
Sbjct: 374 GHSSIRVTE 382


>gi|309796245|ref|ZP_07690655.1| tyrosine recombinase XerC [Escherichia coli MS 145-7]
 gi|308120127|gb|EFO57389.1| tyrosine recombinase XerC [Escherichia coli MS 145-7]
          Length = 298

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 42/270 (15%), Positives = 90/270 (33%), Gaps = 20/270 (7%)

Query: 75  ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRK 127
           +  Y +       L+  + ++++   + II  + +   +          ++       + 
Sbjct: 8   VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKG 67

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186
              +S    L+++R  F W V Q  +  NP   V  PK      +    +DM +      
Sbjct: 68  LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDIDI 127

Query: 187 --SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT--------VE 236
                 + R   E +  +GLR S+     + HL      +     G+           V 
Sbjct: 128 NDPLAVRDRAMLEVMYGAGLRLSELVGLDINHLDLESGEVWVMGKGSKERRLPIGRNAVA 187

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSA 294
             + ++ L  +     +  F++   ++++A      F     K G+N     H +R   A
Sbjct: 188 WIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFA 247

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324
           T   ++      +    G   +   + YT 
Sbjct: 248 THMLESSGDLRGVQELLGHANLSTTQIYTH 277


>gi|254511455|ref|ZP_05123522.1| tyrosine recombinase XerD [Rhodobacteraceae bacterium KLH11]
 gi|221535166|gb|EEE38154.1| tyrosine recombinase XerD [Rhodobacteraceae bacterium KLH11]
          Length = 318

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 49/297 (16%), Positives = 100/297 (33%), Gaps = 33/297 (11%)

Query: 66  KKPTTLKWLISEYRKS-AHWGSLAVNSRISFESYFDQ-----IIRKSGDFDYRKITTKHI 119
             P T    IS + ++ A     A N+ +++           + RKSG  +  +   +  
Sbjct: 2   AAPATQDLWISTFLEAQAAELGAANNTLLAYGRDLKDFADWLMRRKSGFAEADRDQIEGY 61

Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
               +++  + ++  + L++++ L+++A  + +   NP + ++ P R     +     ++
Sbjct: 62  LIDCDAQGLSRATRARRLSAIKQLYRFAFEEGWREANPAIQIKGPGRAKRLPKTLDVPEV 121

Query: 180 QQFKSFW-----SEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGT 231
            +          S   + R     E L  +G+R ++     V   + +    +   K G 
Sbjct: 122 DRLLEAARRTGRSAADRIRNTCLMELLYATGMRVTELVSLPVSSARGDPRMLLVLGKGGK 181

Query: 232 IITVELPDGFMKLLA--------------MTPIGKETFFINNDKQK--MNATQFSIWFKA 275
              V L       LA                      F   +  +   +   +F +  K 
Sbjct: 182 ERMVPLSPPARDALAEWLKQRDDAEERTVAKGGQASRFLFPSRGKSGYLTRHRFFLLVKE 241

Query: 276 KATKAGV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            A + GV     + H +R   AT     GA    +    G   V   E YT   D  
Sbjct: 242 LAVEGGVSPAKVTPHTLRHAFATHLLANGADLRSIQTLLGHADVATTEIYTHVLDER 298


>gi|323342009|ref|ZP_08082242.1| integrase/recombinase XerD [Erysipelothrix rhusiopathiae ATCC
           19414]
 gi|322464434|gb|EFY09627.1| integrase/recombinase XerD [Erysipelothrix rhusiopathiae ATCC
           19414]
          Length = 304

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 40/264 (15%), Positives = 87/264 (32%), Gaps = 21/264 (7%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKH---IRSGVESRKH--TPSSAIQFLTSMRV 142
           A  +  S+ +  +Q I          + +     IR  ++  K+    S+    +  +R 
Sbjct: 19  AALTVASYRNDLNQYIEYLEHESVSSLESVDAEVIRKYIDDIKNDYAASTIQHKIVVIRQ 78

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ---FKSFWSEGSQPRLAFEFL 199
             ++ +    +  +P   V    + T      + + +++   F     +          L
Sbjct: 79  FHQYLLNSGQLQHDPTAFVSLKNKGTRLPTIVSDDTIRKLFSFDRVTGKDFMDYAILLLL 138

Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELP----DGFMKLLAMTPIG--- 251
              GLR S+        +  +   ++   K      + L     DG  + + +       
Sbjct: 139 YRCGLRVSECVHLEFSQVYLDQKWLRILGKGNKERMIPLSIDAIDGLSEYINIIRPQWMI 198

Query: 252 --KETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHEL 307
              E  FIN   + ++        K++  + G+    SAH +R   AT   D G     +
Sbjct: 199 QPTEQIFINAKGKGISRQYIDSMIKSRCKEMGILTPISAHTLRHSFATAILDTGVDLRII 258

Query: 308 MATYGWKTVDQAETYTKGADRIRL 331
               G + +   + YT   ++  L
Sbjct: 259 QELLGHQDISTTQIYTH-VNKKTL 281


>gi|157827055|ref|YP_001496119.1| site-specific tyrosine recombinase XerD [Rickettsia bellii OSU
           85-389]
 gi|157802359|gb|ABV79082.1| site-specific tyrosine recombinase XerD [Rickettsia bellii OSU
           85-389]
          Length = 305

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 49/286 (17%), Positives = 106/286 (37%), Gaps = 38/286 (13%)

Query: 75  ISEYRKSA-HWGSLAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVESRKH 128
           IS++ +      +L+ NS +S++            +K  + +      ++    +     
Sbjct: 4   ISQFLEMLLAERALSKNSILSYKRDLLDFHNYLAKQKLSELNITTDNIRNWVEYLAENGL 63

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-- 186
              S  + +++++  +++ + + +  +NP L+++ PK + +     + +D++    +   
Sbjct: 64  QARSINRKISTIKSYYEFLISENHTNLNPLLNIDLPKYQNKLPEILSIDDIKSLLEYCSQ 123

Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK--------TGTIITV 235
               EG++       L  SGLR S+     +  + +N  S + +K            I V
Sbjct: 124 DISPEGARLNAMIHLLYASGLRVSELVSLKLSDILSNKVSREVKKIFSVLGKGNKERIIV 183

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQK--------------MNATQFSIWFKAKATKAG 281
                   L+    +     F+N  K K              M    F+I  K+ A  AG
Sbjct: 184 INEPAINSLVKYLVVRDN--FVNKTKPKNLIYLFPSSAAAGYMTRQNFAILLKSAALYAG 241

Query: 282 VN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +N    S H +R   A+   + GA    +    G   +   + YT 
Sbjct: 242 LNPEHISPHVLRHSFASHLLEGGADLRVIQELLGHADISTTQIYTH 287


>gi|229104393|ref|ZP_04235062.1| Tyrosine recombinase xerC [Bacillus cereus Rock3-28]
 gi|228679091|gb|EEL33299.1| Tyrosine recombinase xerC [Bacillus cereus Rock3-28]
          Length = 299

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 41/272 (15%), Positives = 89/272 (32%), Gaps = 26/272 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV------ESRKHTPSSAIQFLT 138
            + +  +  S+++  +  +R                            K    S  + ++
Sbjct: 18  RNYSKYTIASYQNDLEHFVRFMEREGISSFLDVTYADVRLYLTTLHDEKLARKSVARKVS 77

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194
           S+R L+++ +R+ Y   NP      PK++    +    E++++           G + + 
Sbjct: 78  SLRSLYRFLMREGYRKDNPFALASLPKKELSIPKFLYAEELEELFEVSDTETPLGQRNQA 137

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE------------LPDGF 241
             E +  +G+R S+     +  +   + +I    K      +             + +G 
Sbjct: 138 LLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQRYIPFGSYAQDALITYMENGR 197

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
            +L   T       F+N     + +            KA +    S H +R   AT   D
Sbjct: 198 KQLANKTEEQSHMVFLNAKGTPLTSRGVRYVLNELIKKASLTMRISPHMLRHTFATHMLD 257

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            GA    +    G + +   + YT    + RL
Sbjct: 258 EGADLRTVQELLGHENLSTTQIYTH-VSKERL 288


>gi|322691424|ref|YP_004220994.1| recombinase [Bifidobacterium longum subsp. longum JCM 1217]
 gi|320456280|dbj|BAJ66902.1| recombinase [Bifidobacterium longum subsp. longum JCM 1217]
          Length = 311

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 43/271 (15%), Positives = 91/271 (33%), Gaps = 31/271 (11%)

Query: 85  GSLAVNSRISFE----SYFDQIIRKSGDFD--YRKITTKHIRSGVESRKHTPSSAIQFLT 138
             LA  +  ++E     Y D +  +         K   +   + ++    +  S  + L 
Sbjct: 23  RGLATATVTAYESDIAKYIDWLETRGIHEPDAITKQDVEDYIAALDQAGESARSKARRLA 82

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG-------SQ 191
           S+    ++A+ Q  V  +   +V+ PK  +      T +++ +     + G        +
Sbjct: 83  SIHEFHRFALGQHAVTADVSAAVKAPKGASTLPDVLTVDEVTRLLDAAAAGGSTDPVVLR 142

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPD----------- 239
            +   EF+  +G R S++  A +  +  +   +    K      V L             
Sbjct: 143 DKALLEFMYATGCRVSEATGANLDDIDLDEHIARLMGKGSKQRLVPLGSYACRAITAYLN 202

Query: 240 ----GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFS 293
                  +  +     +   F+N   ++++        KA   +AG+ K    H +R   
Sbjct: 203 AGRGELEQRSSAKIPERRALFLNKRGKRISRQSVWEIVKATGERAGITKPLHPHTLRHSF 262

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324
           AT     GA    +    G  +V   + YT 
Sbjct: 263 ATHLIQGGADVRTVQELLGHASVTTTQIYTH 293


>gi|239947433|ref|ZP_04699186.1| integrase [Rickettsia endosymbiont of Ixodes scapularis]
 gi|239921709|gb|EER21733.1| integrase [Rickettsia endosymbiont of Ixodes scapularis]
          Length = 387

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 47/284 (16%), Positives = 100/284 (35%), Gaps = 13/284 (4%)

Query: 52  TGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY 111
            G  P  E     ++   T K     Y     +  +       +    D+  +       
Sbjct: 90  QGYNPIEEKARLSKEP--TFKEFYDRYL--DEYSKINNKRWKDYADSVDRYAKHLYPRKI 145

Query: 112 RKITTKHIRSGVESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170
             I    I+    +  K     A +FL  +  +F  A+  E + INP + +++ K ++  
Sbjct: 146 STIQKTDIQELFNNLTKTGKYGANRFLEVLSPVFSKAIEWELLTINPVIGIKKHKEQSR- 204

Query: 171 IRPWTKEDMQQFKSFWSEGSQPRLA--FEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKT 226
            R  T+E++ +F +  ++     +   F   LY+ +R  +      + +   +    +  
Sbjct: 205 DRYLTREEIPRFFTAIADEQNQVMQDFFLIALYTSVRKDNLLTMKWEQVSFTDKQLYLPE 264

Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGV-N 283
            K G    + L D  +++L        +   F +      +  +    +K    KAG+ N
Sbjct: 265 TKNGDPHRLPLLDQAVEILKARKEQSTSMWVFPSETSSSGHLQEPKKAWKRICKKAGIEN 324

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
              H +R+   +  A  GA  + +      +       YT+ A+
Sbjct: 325 LRIHDLRRTIPSWMAMTGANQYVIGQLLNHRDPRSTAVYTRLAN 368


>gi|154496301|ref|ZP_02034997.1| hypothetical protein BACCAP_00589 [Bacteroides capillosus ATCC
           29799]
 gi|150274384|gb|EDN01461.1| hypothetical protein BACCAP_00589 [Bacteroides capillosus ATCC
           29799]
          Length = 301

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 55/281 (19%), Positives = 95/281 (33%), Gaps = 26/281 (9%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           TL      +  +   G +  +S    E    +I           I    ++S   S   +
Sbjct: 2   TLGQWFPLWLDTYKRGVIRDSSLHQLELLARRIPADLMKRPLSAILPMDLQSFFNSFAAS 61

Query: 130 PSS--AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            S     +  T +  LF  AV  E  A NP   V+ PK + +    +T ++++    +  
Sbjct: 62  ASKSYVDKMGTLVNSLFAQAVENELCAKNPMRHVKIPKVQEQCRESFTFDELKLILRYAL 121

Query: 188 EGSQPRLAFEF--LLYSGLRCSDSCRAGVQHLQNNIFSI---------------KTQKT- 229
             +  R++     LL +GLR S+        L  +  ++                  KT 
Sbjct: 122 GYTPLRVSVAVITLLLTGLRRSELLGLKWSDLTADTLTVNRSVYLESGKPKVEEHRAKTI 181

Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS----IWFK--AKATKAGVN 283
            ++ T+ L       L   P   E  F + +    +   FS     +F+   +A      
Sbjct: 182 SSLRTIPLLPELSYKLHTLPKRSEFIFCSRNGTLWHPRNFSRDYTTFFRHLREAEPDARR 241

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            S H  R   AT+S  +GA    + A  G   +     YT 
Sbjct: 242 LSPHCCRHTFATLSLASGADIRTVQALLGHANIKTTSRYTH 282


>gi|45442956|ref|NP_994495.1| site-specific tyrosine recombinase XerC [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108806177|ref|YP_650093.1| site-specific tyrosine recombinase XerC [Yersinia pestis Antiqua]
 gi|108810287|ref|YP_646054.1| site-specific tyrosine recombinase XerC [Yersinia pestis Nepal516]
 gi|145600710|ref|YP_001164786.1| site-specific tyrosine recombinase XerC [Yersinia pestis Pestoides
           F]
 gi|153948314|ref|YP_001399204.1| site-specific tyrosine recombinase XerC [Yersinia
           pseudotuberculosis IP 31758]
 gi|153997101|ref|ZP_02022234.1| putative integrase/recombinase [Yersinia pestis CA88-4125]
 gi|161484900|ref|NP_667725.2| site-specific tyrosine recombinase XerC [Yersinia pestis KIM 10]
 gi|162418493|ref|YP_001605136.1| site-specific tyrosine recombinase XerC [Yersinia pestis Angola]
 gi|165926246|ref|ZP_02222078.1| tyrosine recombinase XerC [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165939104|ref|ZP_02227655.1| tyrosine recombinase XerC [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|166011640|ref|ZP_02232538.1| tyrosine recombinase XerC [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166213553|ref|ZP_02239588.1| tyrosine recombinase XerC [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167401874|ref|ZP_02307362.1| tyrosine recombinase XerC [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167420989|ref|ZP_02312742.1| tyrosine recombinase XerC [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167426292|ref|ZP_02318045.1| tyrosine recombinase XerC [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|167468815|ref|ZP_02333519.1| site-specific tyrosine recombinase XerC [Yersinia pestis FV-1]
 gi|170026220|ref|YP_001722725.1| site-specific tyrosine recombinase XerC [Yersinia
           pseudotuberculosis YPIII]
 gi|218930846|ref|YP_002348721.1| site-specific tyrosine recombinase XerC [Yersinia pestis CO92]
 gi|229837173|ref|ZP_04457338.1| site-specific tyrosine recombinase [Yersinia pestis Pestoides A]
 gi|229839533|ref|ZP_04459692.1| site-specific tyrosine recombinase [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229900096|ref|ZP_04515233.1| site-specific tyrosine recombinase [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229900458|ref|ZP_04515587.1| site-specific tyrosine recombinase [Yersinia pestis Nepal516]
 gi|270488812|ref|ZP_06205886.1| tyrosine recombinase XerC [Yersinia pestis KIM D27]
 gi|294505507|ref|YP_003569569.1| tyrosine recombinase [Yersinia pestis Z176003]
 gi|34222851|sp|Q8D1K0|XERC_YERPE RecName: Full=Tyrosine recombinase xerC
 gi|45437823|gb|AAS63372.1| putative integrase/recombinase [Yersinia pestis biovar Microtus
           str. 91001]
 gi|108773935|gb|ABG16454.1| tyrosine recombinase XerC subunit [Yersinia pestis Nepal516]
 gi|108778090|gb|ABG12148.1| tyrosine recombinase XerC subunit [Yersinia pestis Antiqua]
 gi|115349457|emb|CAL22430.1| putative integrase/recombinase [Yersinia pestis CO92]
 gi|145212406|gb|ABP41813.1| tyrosine recombinase XerC subunit [Yersinia pestis Pestoides F]
 gi|149289407|gb|EDM39485.1| putative integrase/recombinase [Yersinia pestis CA88-4125]
 gi|152959809|gb|ABS47270.1| tyrosine recombinase XerC [Yersinia pseudotuberculosis IP 31758]
 gi|162351308|gb|ABX85256.1| tyrosine recombinase XerC [Yersinia pestis Angola]
 gi|165912877|gb|EDR31503.1| tyrosine recombinase XerC [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|165921770|gb|EDR38967.1| tyrosine recombinase XerC [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165989409|gb|EDR41710.1| tyrosine recombinase XerC [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166205226|gb|EDR49706.1| tyrosine recombinase XerC [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166961118|gb|EDR57139.1| tyrosine recombinase XerC [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167048767|gb|EDR60175.1| tyrosine recombinase XerC [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167054811|gb|EDR64615.1| tyrosine recombinase XerC [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|169752754|gb|ACA70272.1| tyrosine recombinase XerC [Yersinia pseudotuberculosis YPIII]
 gi|229682477|gb|EEO78564.1| site-specific tyrosine recombinase [Yersinia pestis Nepal516]
 gi|229686876|gb|EEO78955.1| site-specific tyrosine recombinase [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229695899|gb|EEO85946.1| site-specific tyrosine recombinase [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229706116|gb|EEO92125.1| site-specific tyrosine recombinase [Yersinia pestis Pestoides A]
 gi|262363573|gb|ACY60294.1| tyrosine recombinase [Yersinia pestis D106004]
 gi|262367501|gb|ACY64058.1| tyrosine recombinase [Yersinia pestis D182038]
 gi|270337316|gb|EFA48093.1| tyrosine recombinase XerC [Yersinia pestis KIM D27]
 gi|294355966|gb|ADE66307.1| tyrosine recombinase [Yersinia pestis Z176003]
 gi|320013559|gb|ADV97130.1| site-specific tyrosine recombinase [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 303

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 44/259 (16%), Positives = 87/259 (33%), Gaps = 19/259 (7%)

Query: 85  GSLAVNSRISFES---YFDQIIRKSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFLT 138
             L+  +  S+        +I  + G   ++ +    +RS V   K      SS    L+
Sbjct: 23  RQLSPLTVTSYRRQLSALMEIGEQMGLAHWQTLDAAQVRSLVSRSKRAGLHASSLALRLS 82

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLA 195
           ++R    W V Q  +  NP   V  P+      +    +++ +  S         + R  
Sbjct: 83  ALRSFLNWLVSQGVLPANPAKGVSTPRSGRHLPKNIDVDEVNKLLSIDLNDPLAVRDRAM 142

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI--------ITVELPDGFMKLLAM 247
            E +  +GLR S+      +H+      +     G+           V     ++ L  +
Sbjct: 143 LEVMYGAGLRLSELVGMNCKHVDLASGDVWVMGKGSKERKVPLGKTAVTWLQHWLALREL 202

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAH 305
                +  F+ N  ++++A      F     K GV  +   H +R   AT   ++     
Sbjct: 203 FEPQDDAIFLANTGKRISARNVQKRFAEWGVKQGVSSHIHPHKLRHSFATHMLESSGDLR 262

Query: 306 ELMATYGWKTVDQAETYTK 324
            +    G   +   + YT 
Sbjct: 263 AVQELLGHANLTTTQIYTH 281


>gi|314933431|ref|ZP_07840796.1| tyrosine recombinase XerC [Staphylococcus caprae C87]
 gi|313653581|gb|EFS17338.1| tyrosine recombinase XerC [Staphylococcus caprae C87]
          Length = 296

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 39/265 (14%), Positives = 95/265 (35%), Gaps = 20/265 (7%)

Query: 85  GSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIR---SGVESRKHTPSSAIQFLTS 139
            + +  +  S+     Q      S   D      K  R   + + S     ++  + +++
Sbjct: 16  RNFSEYTLKSYHDDLIQFNDFLVSEHLDLATFEYKDARNYLAFLYSHNLKRTTVSRKIST 75

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KSFWSEGSQPRLA 195
           +R  +++ + Q+ + +NP + +  PK++    + + +E+M+      +    +G + R+ 
Sbjct: 76  LRTFYEYWMTQDELIVNPFVQLVHPKKEQYLPQFFYEEEMEALFQTVEQDNKKGMRDRVI 135

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE--------LPDGFMKLLA 246
            E L  +G+R S+     ++ +  N+  +K   K      +         +     +   
Sbjct: 136 IELLYATGIRVSELINIKIKDIDMNLPGVKVLGKGNKERFIPFGEFCKQSIERYLDEFQP 195

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATK-AGV-NKSAHGVRKFSATISADAGATA 304
                 E   +N     +              + AGV +   H +R   AT   + GA  
Sbjct: 196 RKSSDHEYLIVNMSGAPITERGVRYVLNDVVKRTAGVTDIHPHKLRHTFATHLLNQGADL 255

Query: 305 HELMATYGWKTVDQAETYTKGADRI 329
             + +  G   +     YT  +++ 
Sbjct: 256 RTVQSLLGHVNLSTTGRYTHVSNQQ 280


>gi|229031461|ref|ZP_04187461.1| Tyrosine recombinase xerC [Bacillus cereus AH1271]
 gi|228729750|gb|EEL80730.1| Tyrosine recombinase xerC [Bacillus cereus AH1271]
          Length = 299

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 43/272 (15%), Positives = 96/272 (35%), Gaps = 26/272 (9%)

Query: 85  GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLT 138
            + +  +  S+++  +  +    + G   +  +T   +R  +      K    S  + ++
Sbjct: 18  RNYSKYTIASYQNDLEHFVQFMEREGISSFLDVTYADVRLYLTTLHDEKLARKSVARKVS 77

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194
           S+R L+++ +R+ Y   NP      PK++    +    E++++           G + + 
Sbjct: 78  SLRSLYRFLMREGYRKDNPFALASLPKKELSIPKFLYAEELEELFEVSDTETPLGQRNQA 137

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE------------LPDGF 241
             E +  +G+R S+     +  +   + +I    K      +             + +G 
Sbjct: 138 LLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQRYIPFGSYAQDALITYIENGR 197

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
            +L   T       F+N     + +            KA +    S H +R   AT   D
Sbjct: 198 KQLAHKTEEHSHMVFLNAKGTPLTSRGVRYVLNELIKKASLTMRISPHMLRHTFATHMLD 257

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            GA    +    G + +   + YT    + RL
Sbjct: 258 EGADLRTVQELLGHENLSTTQIYTH-VSKERL 288


>gi|91205817|ref|YP_538172.1| site-specific tyrosine recombinase XerD [Rickettsia bellii
           RML369-C]
 gi|123084556|sp|Q1RHT1|XERD_RICBR RecName: Full=Tyrosine recombinase xerD
 gi|91069361|gb|ABE05083.1| Tyrosine recombinase XerD [Rickettsia bellii RML369-C]
          Length = 305

 Score =  122 bits (307), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 49/286 (17%), Positives = 106/286 (37%), Gaps = 38/286 (13%)

Query: 75  ISEYRKSA-HWGSLAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVESRKH 128
           IS++ +      +L+ NS +S++            +K  + +      ++    +     
Sbjct: 4   ISQFLEMLLAERALSKNSILSYKRDLLDFHNYLAKQKLSELNITTDNIRNWVEYLAENSL 63

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-- 186
              S  + +++++  +++ + + +  +NP L+++ PK + +     + +D++    +   
Sbjct: 64  QARSINRKISTIKSYYEFLISENHTNLNPLLNIDLPKYQNKLPEILSIDDIKSLLEYCSQ 123

Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK--------TGTIITV 235
               EG++       L  SGLR S+     +  + +N  S + +K            I V
Sbjct: 124 DISPEGARLNAMIHLLYASGLRVSELVSLKLSDILSNKVSREVKKIFSVLGKGNKERIIV 183

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQK--------------MNATQFSIWFKAKATKAG 281
                   L+    +     F+N  K K              M    F+I  K+ A  AG
Sbjct: 184 INEPAINSLVKYLVVRDN--FVNKTKPKNLIYLFPSSAAAGYMTRQNFAILLKSAALYAG 241

Query: 282 VN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +N    S H +R   A+   + GA    +    G   +   + YT 
Sbjct: 242 LNPEHISPHVLRHSFASHLLEGGADLRVIQELLGHADISTTQIYTH 287


>gi|28198670|ref|NP_778984.1| phage-related integrase [Xylella fastidiosa Temecula1]
 gi|182681361|ref|YP_001829521.1| integrase family protein [Xylella fastidiosa M23]
 gi|28056761|gb|AAO28633.1| phage-related integrase [Xylella fastidiosa Temecula1]
 gi|182631471|gb|ACB92247.1| integrase family protein [Xylella fastidiosa M23]
 gi|307579807|gb|ADN63776.1| integrase family protein [Xylella fastidiosa subsp. fastidiosa
           GB514]
          Length = 339

 Score =  122 bits (307), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 61/333 (18%), Positives = 113/333 (33%), Gaps = 28/333 (8%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
           +P F  + + + G + YY+  G   R   P          Y  A+     + E+      
Sbjct: 11  IPRFRVRPQ-KSGVVYYYYDHGGKPRKETPLG------RDYGLAI-KRWAELEHAQITPA 62

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVE 124
              T + +   YR      + A N++         +++   D    +  I   +IR  ++
Sbjct: 63  IAVTFRHVAERYRAEVT-PTKAYNTQRVEHRCLAPLLKFFDDPPAPFEAIKPVNIRQYLD 121

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVA-INPCLSVERPKRKTEGIRPWTKEDMQQFK 183
            R      A + ++    L+ WA  +      NPC  + R K     +      D   ++
Sbjct: 122 WRTSKV-IANREVSVFSHLWNWARSKGITDLPNPCGGIRRNKATGRDVYV----DDTTYR 176

Query: 184 SFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
           + +    Q  R A +    +G R SD      +H+ N    I   KTG  + + +     
Sbjct: 177 AVYQAADQTLRDAMDLAYLTGQRVSDVVSMDERHIVNGALEICQAKTGVKLAIAITGELA 236

Query: 243 KLLAMTPIGKE-------TFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKF 292
            L+      K           ++     +N  + +  F+     AG+ K       +R  
Sbjct: 237 VLIKRIFDRKRGMKLRSTRLIVDEKGLGLNWKKLAYRFRKVRAAAGIAKEVFQFRDLRAK 296

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKG 325
           +AT  AD      +  A  G  +V   E Y + 
Sbjct: 297 AATDKADLAGDIRQAQAQLGHASVTMTEHYVRK 329


>gi|330827985|ref|YP_004390937.1| Tyrosine recombinase XerC [Aeromonas veronii B565]
 gi|328803121|gb|AEB48320.1| Tyrosine recombinase XerC [Aeromonas veronii B565]
          Length = 325

 Score =  122 bits (307), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 51/297 (17%), Positives = 106/297 (35%), Gaps = 25/297 (8%)

Query: 53  GSTPKREYINSPRKKPTTLKWLISEYRKSAHW----GSLAVNSRISFESYFDQIIRKS-- 106
             TP +    +P   P     L  E      +      L+ ++R +++++ + +  +   
Sbjct: 2   ARTPAKAPAKAPVIAPPLPAALADELAAFIEYLRVERQLSPHTRNNYQAHLEAMTAELVA 61

Query: 107 -GDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162
            G  D+ ++    +R+ V         P S    ++++R    W VRQ  +  NP   + 
Sbjct: 62  LGLTDWGRLEASQVRTLVTRMHKAGLAPRSLSTKVSALRSFCDWQVRQGRLTANPARGIV 121

Query: 163 RPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218
            PK+     +    ++M Q  +          + R   E +  SGLR ++     +  L+
Sbjct: 122 TPKQGRPLPKNLDVDEMHQLLNITDEQDPLAVRDRAIMELMYSSGLRLAELVGINLVDLK 181

Query: 219 -NNIFSIKTQKTGTIITVELP----DGFMKLLAMTP----IGKETFFINNDKQKMNATQF 269
            ++     T K      + +     +   K L + P       E  F+++ KQ+++A   
Sbjct: 182 LDDRQLKVTGKGSRERVLPIGRMAVEWLQKWLKVRPLLAGDESEALFVSSRKQRLSARSV 241

Query: 270 SIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
                    K  +N     H +R   AT   ++      +    G   +   + YT 
Sbjct: 242 QARLDGWGNKQALNAHVHPHKLRHSFATHMLESSGDLRAVQELLGHADLSTTQIYTH 298


>gi|189439098|ref|YP_001954179.1| Integrase [Bifidobacterium longum DJO10A]
 gi|189427533|gb|ACD97681.1| Integrase [Bifidobacterium longum DJO10A]
          Length = 308

 Score =  122 bits (307), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 43/271 (15%), Positives = 91/271 (33%), Gaps = 31/271 (11%)

Query: 85  GSLAVNSRISFE----SYFDQIIRKSGDFD--YRKITTKHIRSGVESRKHTPSSAIQFLT 138
             LA  +  ++E     Y D +  +         K   +   + ++    +  S  + L 
Sbjct: 20  RGLATATVTAYESDIAKYIDWLETRGIHEPDAITKQDVEDYIAALDQAGESARSKARRLA 79

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG-------SQ 191
           S+    ++A+ Q  V  +   +V+ PK  +      T +++ +     + G        +
Sbjct: 80  SIHEFHRFALGQHAVTADVSAAVKAPKGASTLPDVLTVDEVTRLLDAAAVGGSTDPVVLR 139

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPD----------- 239
            +   EF+  +G R S++  A +  +  +   +    K      V L             
Sbjct: 140 DKALLEFMYATGCRVSEATGANLDDIDLDEHIARLMGKGSKQRLVPLGSYACRAITAYLN 199

Query: 240 ----GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFS 293
                  +  +     +   F+N   ++++        KA   +AG+ K    H +R   
Sbjct: 200 AGRGELEQRSSAKIPERRALFLNKRGKRISRQSVWEIVKATGERAGITKPLHPHTLRHSF 259

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324
           AT     GA    +    G  +V   + YT 
Sbjct: 260 ATHLIQGGADVRTVQELLGHASVTTTQIYTH 290


>gi|222035509|emb|CAP78254.1| Tyrosine recombinase xerC [Escherichia coli LF82]
 gi|312948364|gb|ADR29191.1| site-specific tyrosine recombinase XerC [Escherichia coli O83:H1
           str. NRG 857C]
 gi|324007468|gb|EGB76687.1| tyrosine recombinase XerC [Escherichia coli MS 57-2]
          Length = 298

 Score =  122 bits (307), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 42/270 (15%), Positives = 91/270 (33%), Gaps = 20/270 (7%)

Query: 75  ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRK 127
           +  Y +       L+  + ++++   + II  + +   +          ++       + 
Sbjct: 8   VERYLRYLSVERQLSPITLLNYQRQLEAIIHFASENGLQSWQQCDVTMVRNFAVRSRRKG 67

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186
              +S    L+++R  F W V Q  +  NP   V  PK      +    +DM +      
Sbjct: 68  LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDIDI 127

Query: 187 --SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT--------VE 236
                 + R   E +  +GLR S+     ++HL      +     G+           V 
Sbjct: 128 NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVA 187

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSA 294
             + ++ L  +     +  F++   ++++A      F     K G+N     H +R   A
Sbjct: 188 WIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFA 247

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324
           T   ++      +    G   +   + YT 
Sbjct: 248 THMLESSGDLRGVQELLGHANLSTTQIYTH 277


>gi|23465930|ref|NP_696533.1| integrase/recombinase [Bifidobacterium longum NCC2705]
 gi|34222807|sp|Q7ZAP1|XERD_BIFLO RecName: Full=Tyrosine recombinase xerD
 gi|23326639|gb|AAN25169.1| probable integrase/recombinase [Bifidobacterium longum NCC2705]
          Length = 308

 Score =  122 bits (307), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 43/271 (15%), Positives = 91/271 (33%), Gaps = 31/271 (11%)

Query: 85  GSLAVNSRISFE----SYFDQIIRKSGDFD--YRKITTKHIRSGVESRKHTPSSAIQFLT 138
             LA  +  ++E     Y D +  +         K   +   + ++    +  S  + L 
Sbjct: 20  RGLATATVTAYESDIAKYIDWLETRGIHEPDAITKQDVEDYIAALDQAGESARSKARRLA 79

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG-------SQ 191
           S+    ++A+ Q  V  +   +V+ PK  +      T +++ +     + G        +
Sbjct: 80  SIHEFHRFALGQHAVTADVSAAVKAPKGASTLPDVLTVDEVTRLLDAAAVGGSTDPVVLR 139

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPD----------- 239
            +   EF+  +G R S++  A +  +  +   +    K      V L             
Sbjct: 140 DKALLEFMYATGCRVSEATGANLDDIDLDEHIARLMGKGSKQRLVPLGSYACRAITAYLN 199

Query: 240 ----GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFS 293
                  +  +     +   F+N   ++++        KA   +AG+ K    H +R   
Sbjct: 200 AGRGELEQRSSAKIPERRALFLNKRGKRISRQSVWEIVKATGERAGITKPLHPHTLRHSF 259

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324
           AT     GA    +    G  +V   + YT 
Sbjct: 260 ATHLIQGGADVRTVQELLGHASVTTTQIYTH 290


>gi|77918237|ref|YP_356052.1| site-specific recombinase [Pelobacter carbinolicus DSM 2380]
 gi|77544320|gb|ABA87882.1| site-specific recombinase [Pelobacter carbinolicus DSM 2380]
          Length = 332

 Score =  122 bits (307), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 47/281 (16%), Positives = 104/281 (37%), Gaps = 29/281 (10%)

Query: 72  KWLISEYRKSAH-WGSLAVNSRISFESYFDQIIR----KSGDF----------DYRKITT 116
             LI+ + +      +L+ ++  ++     +  R    ++G+               +  
Sbjct: 32  DRLIARFCRHLEVERNLSPHTLRAYRQDLTEFSRFLKQEAGEEGSSNTASAIEQVDALVL 91

Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
           +   + +  R    ++  + L+++R  F++ VRQ  +A++P  +V  PKR+    +  T 
Sbjct: 92  RRYLARLHKRNRK-TTIGRKLSAVRSFFRYLVRQGELAVSPAETVATPKREQYLPKVLTV 150

Query: 177 EDMQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-T 231
           +++               + R   E    SGLR  +     V H+      ++ +  G  
Sbjct: 151 DEVFALIKAADGDEPLTVRDRAILELFYSSGLRVGELEGLDVGHVDLRDGLVRVRGKGDK 210

Query: 232 IITVELPDGFMKLL------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--N 283
              V +     + L         P  ++  F+N    ++++       K     AG+  +
Sbjct: 211 ERIVPMGRPARQALGRYLAERGVPDREQPLFLNYRGGRLSSRSIERNLKKWLLCAGILKD 270

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            S H +R   AT   D GA    +    G  ++   + YT+
Sbjct: 271 ASPHALRHTFATHLLDGGADLRAIQELLGHASLSTTQKYTQ 311


>gi|331665461|ref|ZP_08366360.1| tyrosine recombinase XerC [Escherichia coli TA143]
 gi|331057359|gb|EGI29348.1| tyrosine recombinase XerC [Escherichia coli TA143]
          Length = 298

 Score =  122 bits (307), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 42/270 (15%), Positives = 91/270 (33%), Gaps = 20/270 (7%)

Query: 75  ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRK 127
           +  Y +       L+  + ++++   + II  + +   +          ++       + 
Sbjct: 8   VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKG 67

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186
              +S    L+++R  F W V Q  +  NP   V  PK      +    +DM +      
Sbjct: 68  LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSVPKAPRHLPKNIDVDDMNRLLDIDI 127

Query: 187 --SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT--------VE 236
                 + R   E +  +GLR S+     ++HL      +     G+           V 
Sbjct: 128 NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVA 187

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSA 294
             + ++ L  +     +  F++   ++++A      F     K G+N     H +R   A
Sbjct: 188 WIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFA 247

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324
           T   ++      +    G   +   + YT 
Sbjct: 248 THMLESSGDLRGVQELLGHANLSTTQIYTH 277


>gi|288959398|ref|YP_003449739.1| phage integrase family protein [Azospirillum sp. B510]
 gi|288911706|dbj|BAI73195.1| phage integrase family protein [Azospirillum sp. B510]
          Length = 345

 Score =  122 bits (307), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 54/281 (19%), Positives = 96/281 (34%), Gaps = 23/281 (8%)

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122
               +P ++  +I  Y+ SA + + A  +R  +      I   SGD   + ++ + ++  
Sbjct: 31  PDEVRPGSVAHIIRLYKASARFTTKAEKTRYEYGQLLKVIEAWSGDAPVKALSRETVQDY 90

Query: 123 VESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
            +S   T   + A   L  +R+L K+A    +V  N               R W+ E++ 
Sbjct: 91  YQSLWDTGKKAKANAVLRVLRILLKFAWDNGHVTHNAAEKPGMVSIAPRL-RIWSDEEID 149

Query: 181 QFKSFWSEGSQPRLAFEFLL--YSGLRCSDSCRAGVQHLQ----NNIFSIKTQKTGTIIT 234
           +F +       P +A   +   Y G R  D        +Q         +K  K G  + 
Sbjct: 150 RFVAAADAAGWPCIADAVVYGVYLGQRQGDLLALRQLAVQPDGTGYSIHLKQAKRGARVA 209

Query: 235 VELPDGFMKLLAMTPIGK--------ETFFINNDKQKMNATQFSIWFKA-KATKAGVNKS 285
           + L              +           + ++ K   +A  F   F   +AT A    S
Sbjct: 210 IPLHPRAAARQRAALARRTEGGVKAVTALWNDSTKAPWSADTFRHQFSEIRATVAKELPS 269

Query: 286 AHGV-----RKFSATISADAGATAHELMATYGWKTVDQAET 321
              V     R  + T  A+AG T  E+ A  G       + 
Sbjct: 270 IADVWFMDTRDTAVTKLAEAGCTVPEICAITGHDEPSAYQI 310


>gi|296840755|ref|ZP_06863381.2| tyrosine recombinase XerC [Neisseria polysaccharea ATCC 43768]
 gi|296840030|gb|EFH23968.1| tyrosine recombinase XerC [Neisseria polysaccharea ATCC 43768]
          Length = 334

 Score =  122 bits (307), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 37/281 (13%), Positives = 91/281 (32%), Gaps = 24/281 (8%)

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD-------YRKITTKHIR 120
           P         Y ++      + ++  ++    +++                + ++ +   
Sbjct: 32  PDGFAAHFDAYLENIVREGKSEHTVAAYRRDLEELFALLAQMPSEAEGGVPQDLSRRDFT 91

Query: 121 SGVES---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
           + +     R     +  + L+S R    W V++  +  +P   ++ PK+     +  ++E
Sbjct: 92  AALRRLSQRGLNARTLARKLSSWRQYCAWLVKRGLLHTDPTADIKPPKQPERVPKALSQE 151

Query: 178 DMQQFKSF-----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-T 231
            + +              +    FE +  SGLR S+     V  +  +   +     G  
Sbjct: 152 WLNRMLDLPVDGGDPLAVRDHALFELMYGSGLRVSEIHGLNVDDVYLDEAWVHVTGKGRK 211

Query: 232 IITVELP----DGFMKL--LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK--AGVN 283
              V L     +       L  T    +  F   +  +++  Q     ++ A +   G +
Sbjct: 212 QRQVPLTGKSVEALKNYLPLRQTASDGKALFTGRNGTRLSQRQIQKRLESWAVQNGDGRH 271

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            S H +R   A+    +      +    G  ++   + YTK
Sbjct: 272 ISPHMMRHSYASHLLQSSRDIRAVQELLGHSSLSTTQIYTK 312


>gi|284923919|emb|CBG37018.1| tyrosine recombinase [Escherichia coli 042]
 gi|320176053|gb|EFW51122.1| Tyrosine recombinase XerC [Shigella dysenteriae CDC 74-1112]
          Length = 298

 Score =  122 bits (307), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 45/272 (16%), Positives = 93/272 (34%), Gaps = 24/272 (8%)

Query: 75  ISEYRKSAH-WGSLAVNSRISFESYFDQII--------RKSGDFDYRKITTKHIRSGVES 125
           +  Y +       L+  + ++++   + II        +     D   + +  +RS    
Sbjct: 8   VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRSFAVRSRR-- 65

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +    +S    L+++R  F W V Q  +  NP   V  PK      +    +DM +    
Sbjct: 66  KGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDI 125

Query: 186 W---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-------- 234
                   + R   E +  +GLR S+     ++HL      +     G+           
Sbjct: 126 DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNA 185

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKF 292
           V   + ++ L  +     +  F++   ++++A      F     K G+N     H +R  
Sbjct: 186 VAWIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHS 245

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324
            AT   ++      +    G   +   + YT 
Sbjct: 246 FATHMLESSGDLRGVQELLGHANLSTTQIYTH 277


>gi|157159369|ref|YP_001465295.1| site-specific tyrosine recombinase XerC [Escherichia coli E24377A]
 gi|218556374|ref|YP_002389288.1| site-specific tyrosine recombinase XerC [Escherichia coli IAI1]
 gi|300923315|ref|ZP_07139363.1| tyrosine recombinase XerC [Escherichia coli MS 182-1]
 gi|301328427|ref|ZP_07221508.1| tyrosine recombinase XerC [Escherichia coli MS 78-1]
 gi|166918883|sp|A7ZU16|XERC_ECO24 RecName: Full=Tyrosine recombinase xerC
 gi|254799337|sp|B7M613|XERC_ECO8A RecName: Full=Tyrosine recombinase xerC
 gi|157081399|gb|ABV21107.1| tyrosine recombinase XerC [Escherichia coli E24377A]
 gi|218363143|emb|CAR00784.1| site-specific tyrosine recombinase [Escherichia coli IAI1]
 gi|300420401|gb|EFK03712.1| tyrosine recombinase XerC [Escherichia coli MS 182-1]
 gi|300845137|gb|EFK72897.1| tyrosine recombinase XerC [Escherichia coli MS 78-1]
          Length = 298

 Score =  122 bits (307), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 42/270 (15%), Positives = 91/270 (33%), Gaps = 20/270 (7%)

Query: 75  ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRK 127
           +  Y +       L+  + ++++   + II  + +   +          ++       + 
Sbjct: 8   VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTVVRNFAVRSRRKG 67

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186
              +S    L+++R  F W V Q  +  NP   V  PK      +    +DM +      
Sbjct: 68  LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDIDI 127

Query: 187 --SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT--------VE 236
                 + R   E +  +GLR S+     ++HL      +     G+           V 
Sbjct: 128 NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVA 187

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSA 294
             + ++ L  +     +  F++   ++++A      F     K G+N     H +R   A
Sbjct: 188 WIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFA 247

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324
           T   ++      +    G   +   + YT 
Sbjct: 248 THMLESSGDLRGVQELLGHANLSTTQIYTH 277


>gi|323697647|ref|ZP_08109559.1| integrase family protein [Desulfovibrio sp. ND132]
 gi|323457579|gb|EGB13444.1| integrase family protein [Desulfovibrio desulfuricans ND132]
          Length = 316

 Score =  122 bits (307), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 48/265 (18%), Positives = 100/265 (37%), Gaps = 26/265 (9%)

Query: 85  GSLAVNSRISFESYFDQIIR-----KSGDFDYRKITTKHIR---SGVESRKHTPSSAIQF 136
              +  +  S+ +  +Q        K+      ++   H+R   + +  R+ T +S  + 
Sbjct: 26  KGYSPATIRSYGTDLEQFEEFLRGRKASLERPARLNRDHVRGFLAELHRRQMTKTSMGRK 85

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFWSEGSQP 192
           L+S+R  FK+ +R + +  +P   +  PK++    +    +     M+       EG + 
Sbjct: 86  LSSLRAYFKYLLRHKVITKDPVAGIRNPKQEKHHPQVLNVDQAVSLMEARVEPDPEGLRD 145

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252
               E L  SGLR S++    +  + +++  + T K      V L D  +  +      +
Sbjct: 146 VALAEVLYGSGLRISEAIGLDLNDVDSDVIRV-TGKGSKERIVPLSDAAVARIRRYLGQR 204

Query: 253 ETF----------FINNDKQKMNATQFSIWFKAKA-TKAGVNKS--AHGVRKFSATISAD 299
             F          F+++   K    + +    A+    AG+      H +R   AT   +
Sbjct: 205 HAFLKGNYAEQALFLSSRAGKRLDRRQANRIVARLGKLAGLPLDVHPHTLRHSFATHMLE 264

Query: 300 AGATAHELMATYGWKTVDQAETYTK 324
           AGA    +    G + +   + YT 
Sbjct: 265 AGADLRSVQELLGHENLTTTQRYTH 289


>gi|157964586|ref|YP_001499410.1| integrase [Rickettsia massiliae MTU5]
 gi|157844362|gb|ABV84863.1| Integrase [Rickettsia massiliae MTU5]
          Length = 386

 Score =  122 bits (307), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 51/293 (17%), Positives = 103/293 (35%), Gaps = 14/293 (4%)

Query: 45  PAYMSALTGSTPKREYINSPR---KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ 101
            A  S L G   K       +    K  T K L  +Y     +  +       + +  D+
Sbjct: 77  RAKASELKGEIAKGYNPVEEKVRLAKELTFKELYDKYLN--EYSKINNKRWRDYAASIDR 134

Query: 102 IIRKSGDFDYRKITTKHIRSGVESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
             +         I    I+    +  K     A +FL  +  +F  A+  E + INP + 
Sbjct: 135 YAKHLYPRKISTIQKADIQELFNNLTKTGKYGANRFLEVLSPVFSKAIEWELLTINPVIG 194

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWS--EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218
           +++ K ++   R  T+E++ +F +  +  E    +  F   LY+ +R  +      + + 
Sbjct: 195 IKKHKEQSR-DRYLTREEIPRFFTAIAGEENQVMKDFFLIALYTSVRKDNILTMRWEQVS 253

Query: 219 --NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET--FFINNDKQKMNATQFSIWFK 274
             +    +   K G    + L D  +++L        +   F +      +  +    +K
Sbjct: 254 FADKQLYLPDTKNGDPHRLPLLDQAVEILKARKEQSTSEWVFPSETSSSGHLQEPKKAWK 313

Query: 275 AKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
               KAG+ N   H +R+   +  A  GA  + +      +       Y + A
Sbjct: 314 RICKKAGIENLRIHDLRRTIPSWMAMTGANQYVIGQLLNHRDPRSTAVYARLA 366


>gi|194333561|ref|YP_002015421.1| tyrosine recombinase XerD [Prosthecochloris aestuarii DSM 271]
 gi|194311379|gb|ACF45774.1| tyrosine recombinase XerD [Prosthecochloris aestuarii DSM 271]
          Length = 304

 Score =  122 bits (307), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 46/267 (17%), Positives = 94/267 (35%), Gaps = 29/267 (10%)

Query: 85  GSLAVNSRISFESYFDQ--IIRKSGDFDYRKITTKHIRSGVESRKHT---PSSAIQFLTS 139
            + +VN+R S+ +   +  +  +        I    IR  + +   T     S  + +++
Sbjct: 23  RNFSVNTRQSYTNDLSRYLLYMQQQQKAVESIKLDDIREFIHTLSATGMEARSIARNISA 82

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFWSE---GSQP 192
           +R L K+ V ++ V +N   ++ +PK      +  T ++    +    +  S      + 
Sbjct: 83  IRSLHKFLVAEKIVQVNETNNLRQPKPLKALPKVLTHDEAFKLLDAPLAKDSSSRYALRD 142

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQH--LQNNIFSIKTQKTGTIITVEL-----------PD 239
           +   EFL  +G+R S+       +  L      I   K      V +            D
Sbjct: 143 KAILEFLYATGVRVSELVDVCQNNCFLDEGFIRI-FGKGSKERLVPIGSSAVSWIKRYLD 201

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS 297
                +A      +  F+N    ++            +  AG++K  S H +R   AT  
Sbjct: 202 ELRMRIAN-DRSADFLFLNARGGRLTRMTVYNIVTHYSLIAGISKTISPHTLRHTFATHL 260

Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324
            + GA    +    G  ++   + YT 
Sbjct: 261 LEGGADLRAVQEMLGHSSILATQIYTH 287


>gi|292493801|ref|YP_003529240.1| tyrosine recombinase XerC [Nitrosococcus halophilus Nc4]
 gi|291582396|gb|ADE16853.1| tyrosine recombinase XerC [Nitrosococcus halophilus Nc4]
          Length = 300

 Score =  122 bits (307), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 36/274 (13%), Positives = 92/274 (33%), Gaps = 21/274 (7%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRS---GVE 124
           +  I  +     +   L+  + +S+     ++     + G   + ++  + +R+      
Sbjct: 6   QAWIQRFLTHLQYERGLSGQTIVSYRRDLAKVATFCDRHGIQGWGELDAQKVRALVAAHH 65

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
            +  +  S  + L+++R    +  R+  V  +P   V  PK K +       + + Q   
Sbjct: 66  QKGLSGRSIQRLLSALRSFSTYLQREGVVENHPAQGVSAPKGKRQLPHALDVDQVAQLLK 125

Query: 185 FWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-VELPDG 240
                    + +   E    SGLR ++     ++ L      ++    G     V L   
Sbjct: 126 GEPSDQLLLRDQAMLELFYSSGLRLAELVGLNLRELDLEAALVRVVGKGAKTREVPLGRQ 185

Query: 241 FMKLLAM--------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVR 290
               L          TP  ++  F++   ++++        +    + G++ +   H +R
Sbjct: 186 AKAALLAWLPVREAWTPRNQDAVFVSRQGRRLSPRGVQKRLRIWGLRQGLDVAIHPHRLR 245

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              A+   ++      +    G   +   + YT 
Sbjct: 246 HAFASHLLESSGDLRAVQELLGHADISTTQIYTH 279


>gi|319637821|ref|ZP_07992587.1| tyrosine recombinase xerD [Neisseria mucosa C102]
 gi|317400976|gb|EFV81631.1| tyrosine recombinase xerD [Neisseria mucosa C102]
          Length = 215

 Score =  122 bits (307), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 71/201 (35%), Gaps = 16/201 (7%)

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFEF 198
           ++ W       A NP   ++ PK + +     T+  +    +        G + +   E 
Sbjct: 1   MYGWLEETGQRADNPTRFLKAPKSERKLPTLITEAQIDALLAAPDVETPHGLRDKALLEV 60

Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-VELPDGFMKLLAMTPIGKETF-- 255
           +  +GLR +++ +  +  +  +  SI+T   G  +  V L       +            
Sbjct: 61  MYATGLRVTEAVKLTLSDIDLHRGSIRTIGKGDKLRLVPLGQEAAYWVERYCNESRPLLL 120

Query: 256 --------FINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHE 306
                   F++  +  ++     +  K  A  AG+   S HG+R   AT   + G     
Sbjct: 121 KNKICDEVFVSQKRSGISRQLAWMIVKEYAEAAGIASLSPHGLRHAFATHLVNHGVDLRS 180

Query: 307 LMATYGWKTVDQAETYTKGAD 327
           +    G   ++  + YT  A+
Sbjct: 181 VQMMLGHSDINTTQIYTHVAN 201


>gi|117619677|ref|YP_855009.1| tyrosine recombinase XerC [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
 gi|117561084|gb|ABK38032.1| tyrosine recombinase XerC [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
          Length = 325

 Score =  122 bits (307), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 44/261 (16%), Positives = 93/261 (35%), Gaps = 21/261 (8%)

Query: 85  GSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLT 138
             L+ ++R +++++ + +     K G  D+ ++    +RS V         P S    ++
Sbjct: 38  RQLSPHTRSNYQAHLEAMTAELVKLGVDDWARLEASQVRSLVTRMHKAGLAPRSLATKVS 97

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRL 194
           ++R    W VRQ  +  NP   +  PK+     +    ++M Q  +          + R 
Sbjct: 98  ALRSFCDWQVRQGRLVANPARGIVTPKQGRPLPKNLDVDEMYQLLNITDEQDPLAVRDRA 157

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLL 245
             E +  SGLR ++     +  ++ +   ++    G+   V          L        
Sbjct: 158 IMELMYSSGLRLAELVGLNLADVKLDERQLRVTGKGSRERVLPVGRMAVEWLHKWLKLRP 217

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGAT 303
            +     E  F++  KQ+++A            K  +N     H +R   AT   ++   
Sbjct: 218 LLAGDELEALFVSKRKQRLSARSVQERLDGWGNKQALNAHVHPHKLRHSFATHMLESSGD 277

Query: 304 AHELMATYGWKTVDQAETYTK 324
              +    G   +   + YT 
Sbjct: 278 LRAVQELLGHADLSTTQIYTH 298


>gi|91213336|ref|YP_543322.1| site-specific tyrosine recombinase XerC [Escherichia coli UTI89]
 gi|117626070|ref|YP_859393.1| site-specific tyrosine recombinase XerC [Escherichia coli APEC O1]
 gi|218560875|ref|YP_002393788.1| site-specific tyrosine recombinase XerC [Escherichia coli S88]
 gi|237702820|ref|ZP_04533301.1| tyrosine recombinase xerC [Escherichia sp. 3_2_53FAA]
 gi|331649636|ref|ZP_08350718.1| tyrosine recombinase XerC [Escherichia coli M605]
 gi|123084331|sp|Q1R4C3|XERC_ECOUT RecName: Full=Tyrosine recombinase xerC
 gi|166918885|sp|A1AHX9|XERC_ECOK1 RecName: Full=Tyrosine recombinase xerC
 gi|254799332|sp|B7MH75|XERC_ECO45 RecName: Full=Tyrosine recombinase xerC
 gi|91074910|gb|ABE09791.1| integrase/recombinase XerC [Escherichia coli UTI89]
 gi|115515194|gb|ABJ03269.1| site-specific tyrosine recombinase XerC [Escherichia coli APEC O1]
 gi|218367644|emb|CAR05429.1| site-specific tyrosine recombinase [Escherichia coli S88]
 gi|226902991|gb|EEH89250.1| tyrosine recombinase xerC [Escherichia sp. 3_2_53FAA]
 gi|281180860|dbj|BAI57190.1| recombinase [Escherichia coli SE15]
 gi|294489806|gb|ADE88562.1| tyrosine recombinase XerC [Escherichia coli IHE3034]
 gi|307628874|gb|ADN73178.1| site-specific tyrosine recombinase XerC [Escherichia coli UM146]
 gi|315284713|gb|EFU44158.1| tyrosine recombinase XerC [Escherichia coli MS 110-3]
 gi|323189763|gb|EFZ75042.1| tyrosine recombinase XerC [Escherichia coli RN587/1]
 gi|323949305|gb|EGB45195.1| tyrosine recombinase XerC [Escherichia coli H252]
 gi|323954018|gb|EGB49816.1| tyrosine recombinase XerC [Escherichia coli H263]
 gi|330908111|gb|EGH36630.1| tyrosine recombinase XerC [Escherichia coli AA86]
 gi|331041506|gb|EGI13654.1| tyrosine recombinase XerC [Escherichia coli M605]
          Length = 298

 Score =  122 bits (307), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 42/270 (15%), Positives = 91/270 (33%), Gaps = 20/270 (7%)

Query: 75  ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRK 127
           +  Y +       L+  + ++++   + II  + +   +          ++       + 
Sbjct: 8   VERYLRYLSVERQLSPITLLNYQRQLEAIIHFASENGLQSWQQCDVTMVRNFAVRSRRKG 67

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186
              +S    L+++R  F W V Q  +  NP   V  PK      +    +DM +      
Sbjct: 68  LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDIDI 127

Query: 187 --SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT--------VE 236
                 + R   E +  +GLR S+     ++HL      +     G+           V 
Sbjct: 128 NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVA 187

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSA 294
             + ++ L  +     +  F++   ++++A      F     K G+N     H +R   A
Sbjct: 188 WIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFA 247

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324
           T   ++      +    G   +   + YT 
Sbjct: 248 THMLESSGDLRGVQELLGHANLSTTQIYTH 277


>gi|188581692|ref|YP_001925137.1| tyrosine recombinase XerD [Methylobacterium populi BJ001]
 gi|179345190|gb|ACB80602.1| tyrosine recombinase XerD [Methylobacterium populi BJ001]
          Length = 332

 Score =  122 bits (307), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 46/273 (16%), Positives = 89/273 (32%), Gaps = 28/273 (10%)

Query: 85  GSLAVNSRISFESYFDQIIRK-----SGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
              A N+  ++    D  +           + +    +   + +E R    SSA + L+ 
Sbjct: 27  RGAAANTLAAYRRDLDDYLGYLAQQGIDPEEAQADQVRAYIASLEPRGLKASSAARRLSC 86

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW--------SEGSQ 191
           +R   ++   + Y   +P   V  P+R     +  +  ++ +  +           + ++
Sbjct: 87  IRGFHRFLYAEGYCETDPTAPVAAPRRAKGLPKILSVAEVDRLLATARDRVEAAGDDRTE 146

Query: 192 PRLA------FEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKL 244
            R A       E L  +GLR S+              + +   K G    V L +   + 
Sbjct: 147 ARSAARMLCLLELLYATGLRVSELVALPRSAASARERYLVVKGKGGRERLVPLTELAREA 206

Query: 245 LAM-----TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATI 296
           +       T  G   F  +++   +    F+   K  A  AG+     S H +R   A+ 
Sbjct: 207 MRAHVAHLTADGAWLFPADSESGHLTRQAFARDLKVAAAAAGLRTDRVSPHVLRHAFASH 266

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRI 329
               GA    +    G   V   + YT   D  
Sbjct: 267 LLQNGADLRIVQELLGHADVSTTQIYTHVLDER 299


>gi|302343256|ref|YP_003807785.1| integrase family protein [Desulfarculus baarsii DSM 2075]
 gi|301639869|gb|ADK85191.1| integrase family protein [Desulfarculus baarsii DSM 2075]
          Length = 304

 Score =  122 bits (307), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 43/270 (15%), Positives = 88/270 (32%), Gaps = 28/270 (10%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE---------SRKHTPSSAI-- 134
             +  +  ++      + R +G+     +        ++           +  P SA   
Sbjct: 25  GRSPATIAAYRRDLALVARVAGELAPGIVCRAVTAGFLDQVFSDGAVTESERGPRSAASV 84

Query: 135 -QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS--- 190
            +   ++R  F WAV    V  NP  S+   +   +     T  + ++        +   
Sbjct: 85  HRMKAAVRAFFAWAVEVGVVDDNPARSIRMHRLPRKLPVFLTTAEKKRLLKELKGRTDFS 144

Query: 191 --QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE---------LPD 239
             + R   E LL +G+R  +     +  +  +   ++ +  G +  V+         L  
Sbjct: 145 ALRDRAMIEVLLGTGIRLGELAALDMDDIDLDAKHLRVRAKGNVPQVKFIKTDLRTLLRR 204

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS 297
              +         E  F++N   ++   Q +        KAG+ K  + HG+R   AT  
Sbjct: 205 YLAERRRHGRPEMEALFLSNRDGRLCQRQIANRLAHWLRKAGIEKELTPHGLRHTFATHL 264

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGAD 327
             A      +    G + V   + YT   D
Sbjct: 265 YSATNDLLVVQRALGHRDVSTTQVYTHLVD 294


>gi|206901908|ref|YP_002251233.1| recombinase [Dictyoglomus thermophilum H-6-12]
 gi|206741011|gb|ACI20069.1| recombinase [Dictyoglomus thermophilum H-6-12]
          Length = 301

 Score =  122 bits (307), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 42/268 (15%), Positives = 96/268 (35%), Gaps = 18/268 (6%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           I  Y     +  + + N+  S+        +   + D      +++RS ++         
Sbjct: 9   IENYINYLRFERNYSPNTLRSYSRDLMDFYKYCKEKDLDFTNKRNVRSYIQFIAQKNYKN 68

Query: 134 IQFLT---SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS--- 187
             F+    S+R  F++ +  E +  +  + +  PK + +  +  + +++ +  +  S   
Sbjct: 69  STFVRKVISLRSFFEYLLTFEKINEDLTVFIPTPKAEKKLPQFLSVDEVMKLLNSPSLDD 128

Query: 188 -EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLL 245
             G + R   E L  +G+R S+      + +  N   I+   K      V + +  +K+L
Sbjct: 129 LIGIRDRAIIETLYATGIRVSELVGMNEEDINWNYGEIRVFGKRAKERIVIVGEETLKIL 188

Query: 246 ---------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATI 296
                     +    ++ FF+N    +++     +  K          S H +R   AT 
Sbjct: 189 QLYKDHVRPKLLKKPEKAFFLNAKGGRISDRAIRMIIKKYTKDFNKKVSPHTLRHTFATH 248

Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324
             + GA    +    G   +   + YT 
Sbjct: 249 LLEGGADLRYVQELLGHVRISTTQIYTH 276


>gi|297618132|ref|YP_003703291.1| integrase family protein [Syntrophothermus lipocalidus DSM 12680]
 gi|297145969|gb|ADI02726.1| integrase family protein [Syntrophothermus lipocalidus DSM 12680]
          Length = 349

 Score =  122 bits (307), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 45/279 (16%), Positives = 88/279 (31%), Gaps = 22/279 (7%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH 128
           T++    ++ ++   G    +S+  +    +  I    G+   + +   H+++ +     
Sbjct: 53  TVQEWAEKWWRTVKEGKTGNSSQEGYLLAMNKYIFPALGNMKLKDVRPIHVQNLINQMGE 112

Query: 129 TPSSA---IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
              S     Q L ++  +FK+AVR   ++ NP    E  +      +  T   + +    
Sbjct: 113 QGKSKSLQRQVLVALNGMFKYAVRNGLISGNPAQYTEYYEVPANERQALTPAQVAELLQA 172

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK----------------T 229
              G++  LA    LY GLR  +        L  N  +I  +K                 
Sbjct: 173 CK-GTRAELATHLALYCGLRRGEMVALKWSDLDENTRTIHVKKAVEFVNNQPKEKSPKSK 231

Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGV 289
                + +P     +L   P        ++   +M  T      +    K     + H +
Sbjct: 232 AEERIIPIPPHLWDMLQSQPKKSMFVIPSDQGTQMTKTAVRRLLEPVQKKVSFYFTWHML 291

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGAD 327
           R   AT     G          G   +   +  YT   D
Sbjct: 292 RHTYATALDKLGIPPKTCQYLLGHADISTTKNIYTHIQD 330


>gi|256827139|ref|YP_003151098.1| site-specific recombinase XerD [Cryptobacterium curtum DSM 15641]
 gi|256583282|gb|ACU94416.1| site-specific recombinase XerD [Cryptobacterium curtum DSM 15641]
          Length = 315

 Score =  122 bits (307), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 43/284 (15%), Positives = 89/284 (31%), Gaps = 33/284 (11%)

Query: 74  LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESRK 127
           L++ Y +     G  + ++  ++ +     +R +   +   +   H         +++ +
Sbjct: 15  LVARYLEELTSTGRASAHTIRNYGNDLADWLRFAERSNINALEPSHRDIRLYLVDLDAAR 74

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-- 185
           +  ++  + L+S+R  F+W         NP  +V   K            DM +      
Sbjct: 75  YAKATINRRLSSLRGFFRWGQIAGLFEHNPAEAVSSLKEGKHLPHRIPPSDMVRILRVNG 134

Query: 186 -----------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234
                           + +   EFL   G R S++    V  +  +  + +    G+   
Sbjct: 135 PRDEQGKTRLQTPIQMRDQAVLEFLYACGARISEAAALTVDAVDLDRGTARLFGKGSKER 194

Query: 235 VELPDGF------------MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
           V                     L         FF++     MN       FK    +AGV
Sbjct: 195 VVYLHALAIESMGAYLHFARNDLLRGRTDPGYFFLSTRGLPMNTDAIRKMFKTTLIQAGV 254

Query: 283 N--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
               + H +R   A+   + GA    +    G  ++   + YT 
Sbjct: 255 RAAYTPHDMRHTFASDLLEGGADLRSVQELLGHSSLSTTQIYTH 298


>gi|228939736|ref|ZP_04102317.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|228972599|ref|ZP_04133203.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228979206|ref|ZP_04139549.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis Bt407]
 gi|228780563|gb|EEM28787.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis Bt407]
 gi|228787140|gb|EEM35115.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228819968|gb|EEM66012.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|326940330|gb|AEA16226.1| DNA integration/recombination/inversion protein [Bacillus
           thuringiensis serovar chinensis CT-43]
          Length = 369

 Score =  122 bits (307), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 47/312 (15%), Positives = 108/312 (34%), Gaps = 38/312 (12%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE 124
               TLK  ++ + +     S+  ++   +++  +  +I   G     K+   HI+   +
Sbjct: 60  PSKVTLKDYLNHWLEIKS-MSIEKSTFAVYKAVINQHVIPSIGMVALHKLNVIHIQKCYK 118

Query: 125 SRKHTPSSAIQFLTSMRVL---FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
           +      +    L   R+L      AV+Q  ++ NP    E PK++   I+ WT+E++++
Sbjct: 119 TAIDKGIANNSILLMHRILKSALNLAVKQNIISRNPAEFAEIPKKEKTPIQTWTEEEVKK 178

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--------------NNIFSIKTQ 227
           F +  S+ S+  + +   + +G+R  +      Q +               +N      +
Sbjct: 179 FLA-HSQESRYHIGYLLAITTGMRLGEVLGLRWQDIDFEKHTVTINQTSGHDNKIKKTAK 237

Query: 228 KTGTIITVELPDGFMKLLAMTPI--------------GKETFFINNDKQKMNATQFSIWF 273
              +  T+ +P+  +  L    I               ++    N   + +    F   F
Sbjct: 238 TNSSKRTIPVPNETIAALKKHKILINKEKLRFGSAYLDQDLINCNEFGRIIKRAHFRKSF 297

Query: 274 KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRL 331
                K G+ +   H +R   AT+    G     +    G   +      Y+       +
Sbjct: 298 IRMTHKVGIKEIKFHDLRHTHATLLLKQGVNPKIISERLGHTDISMTLSVYSHVL--PNM 355

Query: 332 GIKNSRRISSVV 343
             +  +     +
Sbjct: 356 QEEAVKNFGKSI 367


>gi|192291401|ref|YP_001992006.1| integrase family protein [Rhodopseudomonas palustris TIE-1]
 gi|192285150|gb|ACF01531.1| integrase family protein [Rhodopseudomonas palustris TIE-1]
          Length = 351

 Score =  122 bits (307), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 61/336 (18%), Positives = 105/336 (31%), Gaps = 28/336 (8%)

Query: 20  KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYR 79
           ++  Y R             ES  + +Y  A              R+   TL  LI  + 
Sbjct: 27  RVYLYHRATGEPL------DESRLVESYAEA---------EKKKRRRGGKTLTDLIRFFD 71

Query: 80  KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---------KHTP 130
            S  + SL+   R  +   F +I +K G         +       +          K + 
Sbjct: 72  TSETFASLSAEHRKQYVWKFARIEKKWGTVPEDTFNNQDDADAFAADALAWHQEIGKTSR 131

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
            SA   ++++     +A  +  +  +P  S ER  +     + W  E  Q+F S      
Sbjct: 132 RSADNLMSALCRALSFAKEKRRIKFHPIPSFERLYKSERADKVWPPELQQKFISTARPAM 191

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250
           Q   A   +  + +R  D               I++ KTG  + +         L     
Sbjct: 192 Q--TAMILVRNTAMRAIDIRGFAWTRYDGQRVQIRSHKTGKWLWIPATRELRAHLDCLKR 249

Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMA 309
                 +    +      F+  F+  A   G  + + H  R  +AT+ A+AGATA E+  
Sbjct: 250 TGALVLLTPSGKAYTRRYFNEHFREDADAIGAGDLNFHDNRGTAATLLAEAGATAPEIAE 309

Query: 310 TYGWKTVDQAETYTKG-ADRIRLGIKNSRRISSVVD 344
              W             A R  L      ++    D
Sbjct: 310 ALTWTVDKAQRIIDAYLARRGVLAANAIAKLEDYRD 345


>gi|89894917|ref|YP_518404.1| hypothetical protein DSY2171 [Desulfitobacterium hafniense Y51]
 gi|89334365|dbj|BAE83960.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 290

 Score =  122 bits (307), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 46/269 (17%), Positives = 94/269 (34%), Gaps = 12/269 (4%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP-SSA 133
           I  +        L+  +   +     +I  +       +ITT  +R  +   K    SS 
Sbjct: 17  IQLFLAGKKLEGLSDLTLKGYGIEL-RIFAEHVHKAADEITTADLRLYLGEFKGLRLSSI 75

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
              L+ ++  F W   ++ +  +P   ++ PK++    +  + E+++  +       + R
Sbjct: 76  SGKLSVLKSFFSWLAAEDILLKDPSRKIKPPKKEKRIPKALSIEELEMLREAC-ITPRER 134

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG----FMKLLAMT 248
              E +  +G R S+  +     +     S     K     TV           K L   
Sbjct: 135 ALIEVMYATGCRLSEVQKMNRDDVDYQTMSASVIGKGNKERTVYFSYKAMYHLKKYLMRR 194

Query: 249 PIGKETFFINNDK--QKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATA 304
               E  FI   +  ++++A       K  A ++ V K    H +R   AT+  + GA  
Sbjct: 195 ADEAEALFITERRPYRRLSARGIQREVKLIADRSEVRKNVHPHVLRHTFATLMLNNGADI 254

Query: 305 HELMATYGWKTVDQAETYTKGADRIRLGI 333
             + A  G +     + Y +  D  +  +
Sbjct: 255 ASVQALLGHEDPGTTQIYAQSTDERKQQV 283


>gi|16131663|ref|NP_418256.1| site-specific tyrosine recombinase [Escherichia coli str. K-12
           substr. MG1655]
 gi|26250551|ref|NP_756591.1| site-specific tyrosine recombinase XerC [Escherichia coli CFT073]
 gi|74314323|ref|YP_312742.1| site-specific tyrosine recombinase XerC [Shigella sonnei Ss046]
 gi|82546162|ref|YP_410109.1| site-specific tyrosine recombinase XerC [Shigella boydii Sb227]
 gi|89110208|ref|AP_003988.1| site-specific tyrosine recombinase [Escherichia coli str. K-12
           substr. W3110]
 gi|157163288|ref|YP_001460606.1| site-specific tyrosine recombinase XerC [Escherichia coli HS]
 gi|170022166|ref|YP_001727120.1| site-specific tyrosine recombinase XerC [Escherichia coli ATCC
           8739]
 gi|170083293|ref|YP_001732613.1| site-specific tyrosine recombinase [Escherichia coli str. K-12
           substr. DH10B]
 gi|170683603|ref|YP_001746128.1| site-specific tyrosine recombinase XerC [Escherichia coli SMS-3-5]
 gi|187731086|ref|YP_001882505.1| site-specific tyrosine recombinase XerC [Shigella boydii CDC
           3083-94]
 gi|188496206|ref|ZP_03003476.1| tyrosine recombinase XerC [Escherichia coli 53638]
 gi|191166069|ref|ZP_03027904.1| tyrosine recombinase XerC [Escherichia coli B7A]
 gi|193065702|ref|ZP_03046767.1| tyrosine recombinase XerC [Escherichia coli E22]
 gi|194429226|ref|ZP_03061754.1| tyrosine recombinase XerC [Escherichia coli B171]
 gi|209921289|ref|YP_002295373.1| site-specific tyrosine recombinase XerC [Escherichia coli SE11]
 gi|218550965|ref|YP_002384756.1| site-specific tyrosine recombinase XerC [Escherichia fergusonii
           ATCC 35469]
 gi|218692087|ref|YP_002400299.1| site-specific tyrosine recombinase XerC [Escherichia coli ED1a]
 gi|218697529|ref|YP_002405196.1| site-specific tyrosine recombinase XerC [Escherichia coli 55989]
 gi|218701275|ref|YP_002408904.1| site-specific tyrosine recombinase XerC [Escherichia coli IAI39]
 gi|218707445|ref|YP_002414964.1| site-specific tyrosine recombinase XerC [Escherichia coli UMN026]
 gi|227888604|ref|ZP_04006409.1| site-specific tyrosine recombinase [Escherichia coli 83972]
 gi|238902887|ref|YP_002928683.1| site-specific tyrosine recombinase [Escherichia coli BW2952]
 gi|254039023|ref|ZP_04873074.1| tyrosine recombinase xerC [Escherichia sp. 1_1_43]
 gi|256021445|ref|ZP_05435310.1| site-specific tyrosine recombinase XerC [Shigella sp. D9]
 gi|256026158|ref|ZP_05440023.1| site-specific tyrosine recombinase XerC [Escherichia sp. 4_1_40B]
 gi|260846413|ref|YP_003224191.1| site-specific tyrosine recombinase XerC [Escherichia coli O103:H2
           str. 12009]
 gi|260857783|ref|YP_003231674.1| site-specific tyrosine recombinase XerC [Escherichia coli O26:H11
           str. 11368]
 gi|260870536|ref|YP_003236938.1| site-specific tyrosine recombinase XerC [Escherichia coli O111:H-
           str. 11128]
 gi|293407438|ref|ZP_06651358.1| xerC [Escherichia coli FVEC1412]
 gi|293413253|ref|ZP_06655915.1| tyrosine recombinase XerC [Escherichia coli B354]
 gi|293468129|ref|ZP_06664541.1| tyrosine recombinase XerC [Escherichia coli B088]
 gi|298383178|ref|ZP_06992772.1| tyrosine recombinase xerC [Escherichia coli FVEC1302]
 gi|300818718|ref|ZP_07098925.1| tyrosine recombinase XerC [Escherichia coli MS 107-1]
 gi|300823347|ref|ZP_07103478.1| tyrosine recombinase XerC [Escherichia coli MS 119-7]
 gi|300900639|ref|ZP_07118797.1| tyrosine recombinase XerC [Escherichia coli MS 198-1]
 gi|300939969|ref|ZP_07154597.1| tyrosine recombinase XerC [Escherichia coli MS 21-1]
 gi|300950424|ref|ZP_07164346.1| tyrosine recombinase XerC [Escherichia coli MS 116-1]
 gi|300955183|ref|ZP_07167580.1| tyrosine recombinase XerC [Escherichia coli MS 175-1]
 gi|300985705|ref|ZP_07177560.1| tyrosine recombinase XerC [Escherichia coli MS 45-1]
 gi|301025744|ref|ZP_07189259.1| tyrosine recombinase XerC [Escherichia coli MS 69-1]
 gi|301029028|ref|ZP_07192182.1| tyrosine recombinase XerC [Escherichia coli MS 196-1]
 gi|301047307|ref|ZP_07194393.1| tyrosine recombinase XerC [Escherichia coli MS 185-1]
 gi|301646121|ref|ZP_07246021.1| tyrosine recombinase XerC [Escherichia coli MS 146-1]
 gi|307140510|ref|ZP_07499866.1| site-specific tyrosine recombinase XerC [Escherichia coli H736]
 gi|307313615|ref|ZP_07593235.1| tyrosine recombinase XerC [Escherichia coli W]
 gi|331644544|ref|ZP_08345664.1| tyrosine recombinase XerC [Escherichia coli H736]
 gi|331660156|ref|ZP_08361092.1| tyrosine recombinase XerC [Escherichia coli TA206]
 gi|331670657|ref|ZP_08371494.1| tyrosine recombinase XerC [Escherichia coli TA271]
 gi|331679921|ref|ZP_08380584.1| tyrosine recombinase XerC [Escherichia coli H591]
 gi|331685531|ref|ZP_08386115.1| tyrosine recombinase XerC [Escherichia coli H299]
 gi|67475542|sp|P0A8P6|XERC_ECOLI RecName: Full=Tyrosine recombinase xerC
 gi|67475545|sp|P0A8P7|XERC_ECOL6 RecName: Full=Tyrosine recombinase xerC
 gi|123728303|sp|Q31UH7|XERC_SHIBS RecName: Full=Tyrosine recombinase xerC
 gi|123732258|sp|Q3YVF5|XERC_SHISS RecName: Full=Tyrosine recombinase xerC
 gi|166918884|sp|A8A6R9|XERC_ECOHS RecName: Full=Tyrosine recombinase xerC
 gi|189030076|sp|B1IW93|XERC_ECOLC RecName: Full=Tyrosine recombinase xerC
 gi|254799333|sp|B7L968|XERC_ECO55 RecName: Full=Tyrosine recombinase xerC
 gi|254799335|sp|B7NTD1|XERC_ECO7I RecName: Full=Tyrosine recombinase xerC
 gi|254799336|sp|B7N2A1|XERC_ECO81 RecName: Full=Tyrosine recombinase xerC
 gi|254799338|sp|B1XAH7|XERC_ECODH RecName: Full=Tyrosine recombinase xerC
 gi|254799339|sp|B7NFB3|XERC_ECOLU RecName: Full=Tyrosine recombinase xerC
 gi|254799340|sp|B6I4F2|XERC_ECOSE RecName: Full=Tyrosine recombinase xerC
 gi|254799341|sp|B1LLY2|XERC_ECOSM RecName: Full=Tyrosine recombinase xerC
 gi|254799342|sp|B7LU45|XERC_ESCF3 RecName: Full=Tyrosine recombinase xerC
 gi|254799357|sp|B2TUW7|XERC_SHIB3 RecName: Full=Tyrosine recombinase xerC
 gi|259710430|sp|C4ZZ74|XERC_ECOBW RecName: Full=Tyrosine recombinase xerC
 gi|26110981|gb|AAN83165.1|AE016769_280 Integrase/recombinase xerC [Escherichia coli CFT073]
 gi|148270|gb|AAA24763.1| lambda-integrase [Escherichia coli]
 gi|1790244|gb|AAC76814.1| site-specific tyrosine recombinase [Escherichia coli str. K-12
           substr. MG1655]
 gi|73857800|gb|AAZ90507.1| site-specific recombinase, acts on cer sequence of ColE1, effects
           chromosome segregation at cell division [Shigella sonnei
           Ss046]
 gi|81247573|gb|ABB68281.1| site-specific recombinase [Shigella boydii Sb227]
 gi|85676239|dbj|BAE77489.1| site-specific tyrosine recombinase [Escherichia coli str. K12
           substr. W3110]
 gi|157068968|gb|ABV08223.1| tyrosine recombinase XerC [Escherichia coli HS]
 gi|169757094|gb|ACA79793.1| tyrosine recombinase XerC [Escherichia coli ATCC 8739]
 gi|169891128|gb|ACB04835.1| site-specific tyrosine recombinase [Escherichia coli str. K-12
           substr. DH10B]
 gi|170521321|gb|ACB19499.1| tyrosine recombinase XerC [Escherichia coli SMS-3-5]
 gi|187428078|gb|ACD07352.1| tyrosine recombinase XerC [Shigella boydii CDC 3083-94]
 gi|188491405|gb|EDU66508.1| tyrosine recombinase XerC [Escherichia coli 53638]
 gi|190903845|gb|EDV63559.1| tyrosine recombinase XerC [Escherichia coli B7A]
 gi|192926669|gb|EDV81298.1| tyrosine recombinase XerC [Escherichia coli E22]
 gi|194412738|gb|EDX29032.1| tyrosine recombinase XerC [Escherichia coli B171]
 gi|209914548|dbj|BAG79622.1| recombinase [Escherichia coli SE11]
 gi|218354261|emb|CAV00939.1| site-specific tyrosine recombinase [Escherichia coli 55989]
 gi|218358506|emb|CAQ91153.1| site-specific tyrosine recombinase [Escherichia fergusonii ATCC
           35469]
 gi|218371261|emb|CAR19095.1| site-specific tyrosine recombinase [Escherichia coli IAI39]
 gi|218429651|emb|CAR10472.1| site-specific tyrosine recombinase [Escherichia coli ED1a]
 gi|218434542|emb|CAR15469.1| site-specific tyrosine recombinase [Escherichia coli UMN026]
 gi|226838714|gb|EEH70742.1| tyrosine recombinase xerC [Escherichia sp. 1_1_43]
 gi|227834443|gb|EEJ44909.1| site-specific tyrosine recombinase [Escherichia coli 83972]
 gi|238863558|gb|ACR65556.1| site-specific tyrosine recombinase [Escherichia coli BW2952]
 gi|257756432|dbj|BAI27934.1| site-specific tyrosine recombinase XerC [Escherichia coli O26:H11
           str. 11368]
 gi|257761560|dbj|BAI33057.1| site-specific tyrosine recombinase XerC [Escherichia coli O103:H2
           str. 12009]
 gi|257766892|dbj|BAI38387.1| site-specific tyrosine recombinase XerC [Escherichia coli O111:H-
           str. 11128]
 gi|260451346|gb|ACX41768.1| tyrosine recombinase XerC [Escherichia coli DH1]
 gi|291321507|gb|EFE60945.1| tyrosine recombinase XerC [Escherichia coli B088]
 gi|291425549|gb|EFE98587.1| xerC [Escherichia coli FVEC1412]
 gi|291468201|gb|EFF10698.1| tyrosine recombinase XerC [Escherichia coli B354]
 gi|298276414|gb|EFI17933.1| tyrosine recombinase xerC [Escherichia coli FVEC1302]
 gi|299878022|gb|EFI86233.1| tyrosine recombinase XerC [Escherichia coli MS 196-1]
 gi|300300826|gb|EFJ57211.1| tyrosine recombinase XerC [Escherichia coli MS 185-1]
 gi|300317900|gb|EFJ67684.1| tyrosine recombinase XerC [Escherichia coli MS 175-1]
 gi|300355855|gb|EFJ71725.1| tyrosine recombinase XerC [Escherichia coli MS 198-1]
 gi|300395867|gb|EFJ79405.1| tyrosine recombinase XerC [Escherichia coli MS 69-1]
 gi|300407979|gb|EFJ91517.1| tyrosine recombinase XerC [Escherichia coli MS 45-1]
 gi|300450231|gb|EFK13851.1| tyrosine recombinase XerC [Escherichia coli MS 116-1]
 gi|300455173|gb|EFK18666.1| tyrosine recombinase XerC [Escherichia coli MS 21-1]
 gi|300524133|gb|EFK45202.1| tyrosine recombinase XerC [Escherichia coli MS 119-7]
 gi|300528684|gb|EFK49746.1| tyrosine recombinase XerC [Escherichia coli MS 107-1]
 gi|301075647|gb|EFK90453.1| tyrosine recombinase XerC [Escherichia coli MS 146-1]
 gi|306906596|gb|EFN37108.1| tyrosine recombinase XerC [Escherichia coli W]
 gi|307555937|gb|ADN48712.1| integrase/recombinase XerC [Escherichia coli ABU 83972]
 gi|309704246|emb|CBJ03594.1| tyrosine recombinase [Escherichia coli ETEC H10407]
 gi|315063103|gb|ADT77430.1| site-specific tyrosine recombinase [Escherichia coli W]
 gi|315138388|dbj|BAJ45547.1| xerC [Escherichia coli DH1]
 gi|315293146|gb|EFU52498.1| tyrosine recombinase XerC [Escherichia coli MS 153-1]
 gi|315296792|gb|EFU56084.1| tyrosine recombinase XerC [Escherichia coli MS 16-3]
 gi|320185472|gb|EFW60241.1| Tyrosine recombinase XerC [Shigella flexneri CDC 796-83]
 gi|320198482|gb|EFW73083.1| Tyrosine recombinase XerC [Escherichia coli EC4100B]
 gi|323155217|gb|EFZ41401.1| tyrosine recombinase XerC [Escherichia coli EPECa14]
 gi|323161125|gb|EFZ47043.1| tyrosine recombinase XerC [Escherichia coli E128010]
 gi|323173426|gb|EFZ59055.1| tyrosine recombinase XerC [Escherichia coli LT-68]
 gi|323177824|gb|EFZ63408.1| tyrosine recombinase XerC [Escherichia coli 1180]
 gi|323182583|gb|EFZ67987.1| tyrosine recombinase XerC [Escherichia coli 1357]
 gi|323380833|gb|ADX53101.1| tyrosine recombinase XerC [Escherichia coli KO11]
 gi|323934199|gb|EGB30630.1| tyrosine recombinase XerC [Escherichia coli E1520]
 gi|323938947|gb|EGB35166.1| tyrosine recombinase XerC [Escherichia coli E482]
 gi|323943787|gb|EGB39882.1| tyrosine recombinase XerC [Escherichia coli H120]
 gi|324016212|gb|EGB85431.1| tyrosine recombinase XerC [Escherichia coli MS 117-3]
 gi|324111036|gb|EGC05023.1| tyrosine recombinase XerC [Escherichia fergusonii B253]
 gi|324115726|gb|EGC09661.1| tyrosine recombinase XerC [Escherichia coli E1167]
 gi|331036216|gb|EGI08451.1| tyrosine recombinase XerC [Escherichia coli H736]
 gi|331052724|gb|EGI24759.1| tyrosine recombinase XerC [Escherichia coli TA206]
 gi|331062130|gb|EGI34052.1| tyrosine recombinase XerC [Escherichia coli TA271]
 gi|331072468|gb|EGI43800.1| tyrosine recombinase XerC [Escherichia coli H591]
 gi|331077232|gb|EGI48446.1| tyrosine recombinase XerC [Escherichia coli H299]
 gi|332089061|gb|EGI94172.1| tyrosine recombinase XerC [Shigella boydii 3594-74]
 gi|332105033|gb|EGJ08379.1| tyrosine recombinase xerC [Shigella sp. D9]
          Length = 298

 Score =  122 bits (307), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 42/270 (15%), Positives = 91/270 (33%), Gaps = 20/270 (7%)

Query: 75  ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRK 127
           +  Y +       L+  + ++++   + II  + +   +          ++       + 
Sbjct: 8   VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKG 67

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186
              +S    L+++R  F W V Q  +  NP   V  PK      +    +DM +      
Sbjct: 68  LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDIDI 127

Query: 187 --SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT--------VE 236
                 + R   E +  +GLR S+     ++HL      +     G+           V 
Sbjct: 128 NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVA 187

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSA 294
             + ++ L  +     +  F++   ++++A      F     K G+N     H +R   A
Sbjct: 188 WIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFA 247

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324
           T   ++      +    G   +   + YT 
Sbjct: 248 THMLESSGDLRGVQELLGHANLSTTQIYTH 277


>gi|308172775|ref|YP_003919480.1| Tyrosine recombinase xerD [Bacillus amyloliquefaciens DSM 7]
 gi|307605639|emb|CBI42010.1| Tyrosine recombinase xerD [Bacillus amyloliquefaciens DSM 7]
          Length = 321

 Score =  122 bits (307), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 43/300 (14%), Positives = 97/300 (32%), Gaps = 22/300 (7%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF---DQIIRKSG 107
            +         + P  + T  +   + + +     +L+ ++   + +       ++ + G
Sbjct: 6   RSNIIAAVPETDKPEIELTDFETAYNAFIRECKIKNLSEHTLKYYRNELLSFRSMLEQQG 65

Query: 108 -DFDYRKITTKHIRS-----GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV 161
                 KIT   ++       ++      +S    L ++R  F +  +   +  NP   +
Sbjct: 66  VSTRPEKITLPILKENVIVYMMDKLGRKETSINTRLRAIRAFFNFLEKNRMIGDNPAKEL 125

Query: 162 ERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHL 217
              K+K E I  +++E ++       +G+    +       L+ +G+R  +     V+ +
Sbjct: 126 SLVKQKKEVIETFSREQLRDILRQPDQGTFTGFRDYTIMLLLIETGVRVRELTDISVKDI 185

Query: 218 Q-NNIFSIKTQKTGTIITVELPDGFMKLLA-----MTPIGKETFFINNDKQKMNATQFSI 271
           +  +   +   K      V +       L         +  +  F+  D   +   Q   
Sbjct: 186 RWEDSQILINGKGYKERLVPIQSTVKTRLRKYVQIRGDVPNDALFVTIDNTPLTTRQVQN 245

Query: 272 WFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
                   A +     S H  R   A +S   GA    L A  G  ++D    Y     R
Sbjct: 246 RLSKYGRMANIKNVRCSPHTFRHTFAKMSVQNGADVFALQAVLGHSSLDMVRNYVNLFSR 305


>gi|238855698|ref|ZP_04645995.1| tyrosine recombinase XerC [Lactobacillus jensenii 269-3]
 gi|260664453|ref|ZP_05865305.1| tyrosine recombinase XerC [Lactobacillus jensenii SJ-7A-US]
 gi|282932212|ref|ZP_06337659.1| tyrosine recombinase XerC [Lactobacillus jensenii 208-1]
 gi|313472147|ref|ZP_07812639.1| tyrosine recombinase XerC [Lactobacillus jensenii 1153]
 gi|238831683|gb|EEQ24023.1| tyrosine recombinase XerC [Lactobacillus jensenii 269-3]
 gi|239529518|gb|EEQ68519.1| tyrosine recombinase XerC [Lactobacillus jensenii 1153]
 gi|260561518|gb|EEX27490.1| tyrosine recombinase XerC [Lactobacillus jensenii SJ-7A-US]
 gi|281303662|gb|EFA95817.1| tyrosine recombinase XerC [Lactobacillus jensenii 208-1]
          Length = 302

 Score =  122 bits (307), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 41/280 (14%), Positives = 102/280 (36%), Gaps = 25/280 (8%)

Query: 70  TLKWLISEYRKSAHW-GSLAVNSRISFESYF----DQIIRKSGDFDYRKITTKHIRSGVE 124
           T K L+ +++    +    +  +  ++ +      D      G   ++++T++ I   + 
Sbjct: 2   TKKSLLEQFKDYLAYERGYSNLTLTAYLNDLKQAEDFWKNNGGFNGFKQVTSRDIEIYIA 61

Query: 125 SRKHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
           S   T    +S  + L+S++  +K+  R+  V ++P  +V   ++  +    + + ++++
Sbjct: 62  SLASTGLSQASQARKLSSLKSFYKFLTRRNLVEVDPTQTVSIHRKSKKLPEFFYEPEIKK 121

Query: 182 FKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVE 236
                S       + +  FE    +G+R S+     ++ +  +    +   K      V 
Sbjct: 122 VLDSLSASDKLTVRNKAMFELFYATGMRVSEVSNLTLEQIDFDVQMILVHGKGNKDRYVP 181

Query: 237 LPDGFMKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NK 284
             D     L                    F++N   ++ +       +    K G+  N 
Sbjct: 182 FGDYAKACLLRYLNEARRLFNPDDDNHYVFLDNRGHQLTSRGIEYIMRKVFQKGGLSANV 241

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             H +R   AT   + GA    +    G +++   + YT 
Sbjct: 242 HPHELRHTFATQMLNNGADLRSVQELLGHESLSTTQIYTH 281


>gi|323167559|gb|EFZ53265.1| tyrosine recombinase XerC [Shigella sonnei 53G]
          Length = 298

 Score =  122 bits (307), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 45/272 (16%), Positives = 92/272 (33%), Gaps = 24/272 (8%)

Query: 75  ISEYRKSAH-WGSLAVNSRISFESYFDQII--------RKSGDFDYRKITTKHIRSGVES 125
           +  Y +       L+  + ++++   + II        +     D   +    +RS    
Sbjct: 8   VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENVLQSWQQCDVTMVRNFAVRSRR-- 65

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +    +S    L+++R  F W V Q  +  NP   V  PK      +    +DM +    
Sbjct: 66  KGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDI 125

Query: 186 W---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-------- 234
                   + R   E +  +GLR S+     ++HL      +     G+           
Sbjct: 126 DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNA 185

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKF 292
           V   + ++ L  +     +  F++   ++++A      F     K G+N     H +R  
Sbjct: 186 VAWIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHS 245

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324
            AT   ++      +    G   +   + YT 
Sbjct: 246 FATHMLESSGDLRGVQELLGHANLSTTQIYTH 277


>gi|258590894|emb|CBE67189.1| Tyrosine recombinase xerC [NC10 bacterium 'Dutch sediment']
          Length = 349

 Score =  122 bits (307), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 44/246 (17%), Positives = 84/246 (34%), Gaps = 21/246 (8%)

Query: 100 DQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL 159
           D + R+    +   +  +   + +  R    SS  + L ++R  F++  R+  VA NP  
Sbjct: 87  DALHRQIKPGEIDVLAIRAFVADLHRRGIARSSIARKLATLRSFFRYLCREGVVAANPAK 146

Query: 160 SVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQ 215
            V  PK         T +++ +  +   E    G++     E    SG+R S+     V+
Sbjct: 147 LVSTPKLPKRLPAYLTVDEVDRLLASPGEQDLPGARDLAILELFYASGIRLSELTGLDVR 206

Query: 216 HLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM--------------TPIGKETFFINND 260
            +      ++   K G    V +    +  L                        F+N  
Sbjct: 207 DVDIREGLVRVKGKGGKERIVPVGSKAIVALRRYLDRRSDLIHESKRVAPESVALFLNRQ 266

Query: 261 KQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
             +++    +        ++GV    + HG+R   AT    AGA    +    G   +  
Sbjct: 267 GGRLSQRSIARIVLKHLNQSGVGPKITPHGLRHSYATHLLQAGADLRAIQELLGHSRLST 326

Query: 319 AETYTK 324
            + YT 
Sbjct: 327 TQRYTH 332


>gi|215489139|ref|YP_002331570.1| site-specific tyrosine recombinase XerC [Escherichia coli O127:H6
           str. E2348/69]
 gi|312969461|ref|ZP_07783663.1| tyrosine recombinase XerC [Escherichia coli 2362-75]
 gi|254799331|sp|B7UNC8|XERC_ECO27 RecName: Full=Tyrosine recombinase xerC
 gi|215267211|emb|CAS11659.1| site-specific tyrosine recombinase XerC [Escherichia coli O127:H6
           str. E2348/69]
 gi|312286008|gb|EFR13926.1| tyrosine recombinase XerC [Escherichia coli 2362-75]
 gi|320197620|gb|EFW72232.1| Tyrosine recombinase XerC [Escherichia coli WV_060327]
 gi|325499220|gb|EGC97079.1| site-specific tyrosine recombinase XerC [Escherichia fergusonii
           ECD227]
          Length = 298

 Score =  122 bits (307), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 42/270 (15%), Positives = 91/270 (33%), Gaps = 20/270 (7%)

Query: 75  ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRK 127
           +  Y +       L+  + ++++   + II  + +   +          ++       + 
Sbjct: 8   VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKG 67

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186
              +S    L+++R  F W V Q  +  NP   V  PK      +    +DM +      
Sbjct: 68  LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDIDI 127

Query: 187 --SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT--------VE 236
                 + R   E +  +GLR S+     ++HL      +     G+           V 
Sbjct: 128 NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVA 187

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSA 294
             + ++ L  +     +  F++   ++++A      F     K G+N     H +R   A
Sbjct: 188 WIEHWLDLRNLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFA 247

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324
           T   ++      +    G   +   + YT 
Sbjct: 248 THMLESSGDLRGVQELLGHANLSTTQIYTH 277


>gi|120404256|ref|YP_954085.1| site-specific tyrosine recombinase XerD [Mycobacterium vanbaalenii
           PYR-1]
 gi|119957074|gb|ABM14079.1| tyrosine recombinase XerD subunit [Mycobacterium vanbaalenii PYR-1]
          Length = 317

 Score =  122 bits (307), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 42/274 (15%), Positives = 86/274 (31%), Gaps = 35/274 (12%)

Query: 85  GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKH----------TPS 131
             +A N+  S+     +        G  D   +    +   + S +           +  
Sbjct: 25  RGVAANTLSSYRRDLRRYAEHLASRGVTDLAGVAEADVSEFLVSLRRGDPDNGVVPLSAV 84

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----- 186
           SA + + ++R L ++A  +    ++    V+ P       +  + +++            
Sbjct: 85  SAARAVIAVRGLHRFAAAEGITTVDVAREVKPPTPGRRLPKSLSIDEVLALLEAAGGDGE 144

Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFM 242
                  + R   E L  +G R S++    V  +       +   K G    + +    +
Sbjct: 145 ADGPLTLRNRALLELLYSTGARISEAVGLDVDDVDTEARSVLLRGKGGKQRLIPIGRPAV 204

Query: 243 KLL-----------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289
             L           A    G    F+N    +++        +  A +AG+    S H +
Sbjct: 205 SALDNYLVRGRPDLARRGRGTPAIFLNARGGRLSRQSAWQVLQDAAERAGITATVSPHVL 264

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           R   AT   D GA    +    G  +V   + YT
Sbjct: 265 RHSFATHLLDGGADVRVVQELLGHASVTTTQIYT 298


>gi|300787863|ref|YP_003768154.1| integrase/recombinase XerD [Amycolatopsis mediterranei U32]
 gi|299797377|gb|ADJ47752.1| integrase/recombinase XerD [Amycolatopsis mediterranei U32]
          Length = 310

 Score =  122 bits (307), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 53/288 (18%), Positives = 90/288 (31%), Gaps = 30/288 (10%)

Query: 66  KKPTTLKWLISEYRKS-AHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHI-- 119
             P     +I+ Y          A N+  S+     +        G      +T+ H+  
Sbjct: 3   SSPHRTADVIAAYLDHLVVERGTARNTLDSYARDLRRYAAHLDGLGVAKIADVTSAHVTA 62

Query: 120 ------RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
                     E R    SSA + L ++R L K+A  +     NP   V  P       + 
Sbjct: 63  FGAALREGDDEHRPLAASSAARALVAVRGLHKFAHAEGLTEHNPAREVRPPTPAKRLPKA 122

Query: 174 WTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQK 228
              +D+ +             + R   E L  +G R S++    V  +       +   K
Sbjct: 123 LPVDDVLRLLETPPPDGERALRDRALLELLYSTGARISEAVGLDVDDVDGAERTVLLDGK 182

Query: 229 TGTIITVELPDGFMKLLAMTPI-----------GKETFFINNDKQKMNATQFSIWFKAKA 277
            G    V +    +  L    +           G    F+N    +++        K  A
Sbjct: 183 GGKQRLVPIGRPALAALHAYTVRARPALAVHGRGTAALFLNARGSRLSRQSAWQVLKDTA 242

Query: 278 TKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
            +AG+    S H +R   AT   + GA    +    G  +V   + YT
Sbjct: 243 GRAGITAVVSPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQVYT 290


>gi|239827068|ref|YP_002949692.1| integrase [Geobacillus sp. WCH70]
 gi|239807361|gb|ACS24426.1| integrase family protein [Geobacillus sp. WCH70]
          Length = 301

 Score =  122 bits (307), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 43/295 (14%), Positives = 109/295 (36%), Gaps = 30/295 (10%)

Query: 71  LKWLISEYRKSAH-WGSLAVNSRISFE---SYFDQIIRKSG-DFDYRKITTKHIRSGVES 125
            +  I E+        + ++N+   +      F+  + + G       IT  H+R  ++ 
Sbjct: 3   FRQAIDEFVLYLQIEKNYSLNTVDGYAYDLRCFENFLVQHGYSVQLNNITKTHVRRFIQH 62

Query: 126 R----KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
           +       P +  + ++ ++   K+ V++  +  +  + ++ PK  ++     +  ++++
Sbjct: 63  QITKENVKPRTIYRRISCLKSFSKYCVKENLIDNDFMIGIDTPKTDSKLPTYMSLSELRK 122

Query: 182 FKSFWSE-----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITV 235
              F  +       +  L F+ L  +G+R S+      + +  +  +I+   K      +
Sbjct: 123 LFHFLEQDNSRMAMRNHLLFKLLATTGMRRSEIVELTWEQIDLSNNTIRIYGKGKKERLL 182

Query: 236 ELPDGFMKLLAM--------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---K 284
            L    + L+               +  F+N + +K+N       FK    KAG+     
Sbjct: 183 PLHPMVVPLMKSYMESLEEYQLHPSQPVFLNKNGKKLNPRGLHKIFKDILQKAGLPPQRF 242

Query: 285 SAHGVRKFSATISADAGA---TAHELMATYGWKTVDQAETYTK-GADRIRLGIKN 335
           S H +R   AT+             +    G +++   + YT    ++ +  I+ 
Sbjct: 243 SLHHLRHTFATLLIQENKENVDLRTVQELLGHESLVTTQVYTHVDFEQKKKAIET 297


>gi|303241172|ref|ZP_07327680.1| integrase family protein [Acetivibrio cellulolyticus CD2]
 gi|302591299|gb|EFL61039.1| integrase family protein [Acetivibrio cellulolyticus CD2]
          Length = 330

 Score =  122 bits (306), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 41/217 (18%), Positives = 87/217 (40%), Gaps = 17/217 (7%)

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWA-VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
            +R +T  +  + + S++  F +   + + + +NP   +E PK      R    E+ +Q 
Sbjct: 88  NNRDNTSYARARKVASLKSFFNYLFNKAKLLNVNPASELESPKILKRLPRYLNVEESKQL 147

Query: 183 KSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL-- 237
            S  + G+   +        L  G+R S+     + +++N+  ++   K     ++ L  
Sbjct: 148 LSSVNTGTYSERDYAMLTLFLNCGMRLSELVGININNIKNDTLTVI-GKGDKERSIPLNS 206

Query: 238 --PDGFMKLLAMTPI----GKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288
              +     + + P+     K   FI+  KQ+++        K    +AG++    S H 
Sbjct: 207 ACLEAIEAYMKVRPVNGVKDKNALFISGRKQRISKESVQKIVKKYIKQAGLDPQRYSTHK 266

Query: 289 VRKFSATISADAGA-TAHELMATYGWKTVDQAETYTK 324
           +R  +AT+    G      L    G +++   E YT 
Sbjct: 267 LRHTAATLMYKYGKVDIRALQELLGHESIATTEIYTH 303


>gi|188532374|ref|YP_001906171.1| site-specific tyrosine recombinase XerC [Erwinia tasmaniensis
           Et1/99]
 gi|188027416|emb|CAO95263.1| Tyrosine recombinase XerC [Erwinia tasmaniensis Et1/99]
          Length = 302

 Score =  122 bits (306), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 37/259 (14%), Positives = 83/259 (32%), Gaps = 19/259 (7%)

Query: 85  GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFLT 138
             L+  ++I++      +I    +    D+ ++    +RS           P+S    L+
Sbjct: 22  RQLSPLTQINYRRQLSALIVLLDELKVVDWARLDAALVRSLAARSTRSGLKPASLALRLS 81

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLA 195
           ++R    W + Q  +  NP   V  P+      +    +++ +            + R  
Sbjct: 82  ALRSFLDWLMSQGMIKANPAKGVATPRAGRHLPKNIDVDEVNRLLEIDLNDPLAVRDRAM 141

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLAMT------ 248
            E +  +GLR S+     + HL           K      + +    +  +         
Sbjct: 142 LEVMYGAGLRLSELVGIDLGHLDLASGEVWVVGKGSKERRLPMGRTAVHWIENWLEMREL 201

Query: 249 -PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAH 305
                   F++N  ++++       F     K G+  +   H +R   AT   ++     
Sbjct: 202 FDPEDNALFLSNKGKRISTRNVQKRFAEWGVKQGISSHIHPHKLRHSFATHMLESSGDLR 261

Query: 306 ELMATYGWKTVDQAETYTK 324
            +    G   +   + YT 
Sbjct: 262 AVQELLGHANLTTTQIYTH 280


>gi|34222761|sp|O31087|XERC_SERMA RecName: Full=Tyrosine recombinase xerC
 gi|2625019|gb|AAC46276.1| site specific recombinase [Serratia marcescens]
          Length = 303

 Score =  122 bits (306), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 42/275 (15%), Positives = 97/275 (35%), Gaps = 20/275 (7%)

Query: 70  TLKWLISEYRKSAH-WGSLAVNSRISFES---YFDQIIRKSGDFDYRKITTKHIR--SGV 123
           +L+  +  + +       L+  +++S+        ++ ++ G  D+  +    +R  +  
Sbjct: 7   SLQQPVDAFLRYLKVERQLSPLTQLSYSRQLTALMRLAQEIGVTDWTTLDAARVRMLAAR 66

Query: 124 ESRKHTPSSAIQF-LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
             R    S+++   L+S+R    W V Q  +  NP   +  P+      +    ++M Q 
Sbjct: 67  SKRAGLQSASLALRLSSLRSFLDWLVSQGVLHANPAKGIRTPRSGRHLPKNIDVDEMNQL 126

Query: 183 KSFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-------- 231
                      + R   E +  +GLR S+      +H+      +     G+        
Sbjct: 127 LEIDLNDPLAVRDRAMLEVMYGAGLRLSELVGLDCRHVDMAAGEVWVMGKGSKERKLPIG 186

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGV 289
              V   + ++ +  +     +  F++N  ++++       F     K GVN     H +
Sbjct: 187 RTAVTWLEHWLAMRDLFGPQDDAMFLSNQGRRISTRNVQKRFAEWGVKQGVNSHIHPHKL 246

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           R   AT   ++      +    G   +   + YT 
Sbjct: 247 RHSFATHMLESSGDLRAVQELLGHANLTTTQIYTH 281


>gi|167945040|ref|ZP_02532114.1| tyrosine recombinase XerD [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 227

 Score =  122 bits (306), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 33/207 (15%), Positives = 78/207 (37%), Gaps = 17/207 (8%)

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KSFWSEGS 190
           + + ++R  +K+ ++++ ++ +P  +++ PK         + ++M+       +    G 
Sbjct: 5   RHIITIRGFYKFLIKEKLISFDPVKNIDIPKTGLSLPEVISSKEMELLIDSVDTKNPRGL 64

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMK-----L 244
           +     E L  +GLR S+     ++++      I+   K      V +    ++     +
Sbjct: 65  RNAAMLETLYGAGLRVSELVSMKMENINLEASFIRIFGKGSKERIVPIGSFAIEKVRNWI 124

Query: 245 LAMTPI-----GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS 297
           +   PI          F+    + M    F    K  +  +G++K  + H  R   AT  
Sbjct: 125 MHGRPIILKNIPSHYLFVARAGKPMTRQGFWKLLKKYSRASGISKKITPHTFRHSFATHL 184

Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324
            + GA    +    G   +   + YT 
Sbjct: 185 LEGGADLRSVQTMLGHSDISTTQIYTH 211


>gi|282901889|ref|ZP_06309792.1| Phage integrase [Cylindrospermopsis raciborskii CS-505]
 gi|281193227|gb|EFA68221.1| Phage integrase [Cylindrospermopsis raciborskii CS-505]
          Length = 287

 Score =  122 bits (306), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 45/263 (17%), Positives = 93/263 (35%), Gaps = 20/263 (7%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE---SRKH 128
           +WL   Y KS H       S+ ++       I    D      T  H R+  E       
Sbjct: 26  QWL---YGKSNH-------SKRNYTRVIRSYISYLSDIHIANSTAAHFRNYQEYLYQSGK 75

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI-RPWTKEDMQQFKSFWS 187
           T ++   +   ++  F +   +  +  N    V+ PK  +    R  T+ ++    +   
Sbjct: 76  TINTINTYTNIIKSFFTFLRDESVLPTNITHRVKSPKPVSALRERILTRAEIDAMITL-E 134

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI---KTQKTGTIITVELPDGFMKL 244
             ++ RL  + L + GLR S+        +++N  +     T K     T+ +P      
Sbjct: 135 TNTRNRLILQLLFFCGLRVSELTILLWADIKDNGSTAYVHITGKGNKQRTLIIPPLLWAS 194

Query: 245 LAMTPIGKETFFINND--KQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGA 302
           L       E+    +    + +         +  + + G++ S H +R   A+++   GA
Sbjct: 195 LKSHKTTNESPVFKSRKGGKNLTQKAVWDIVRTASQRIGISASPHWLRHTHASLALHNGA 254

Query: 303 TAHELMATYGWKTVDQAETYTKG 325
             +++  + G  +V     Y   
Sbjct: 255 DINQVSTSLGHSSVATTTKYLHA 277


>gi|317494831|ref|ZP_07953242.1| tyrosine recombinase XerC [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316917156|gb|EFV38504.1| tyrosine recombinase XerC [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 303

 Score =  122 bits (306), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 42/259 (16%), Positives = 93/259 (35%), Gaps = 19/259 (7%)

Query: 85  GSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIR---SGVESRKHTPSSAIQFLT 138
             L+ ++  S+      II     SG  D+R++ +  +R   +  +      +S    L+
Sbjct: 23  RQLSPHTIESYHHQLMAIIEIVSASGLRDWRQLDSNQVRMITARSKRMGLEAASIALRLS 82

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLA 195
           S+R    W V Q  +++NP   +  PK+     +    +D+ +            + R  
Sbjct: 83  SLRSFLDWQVSQGVMSVNPAKGISAPKQARHLPKNLDVDDVNRLLEIDSSDPLAVRDRTM 142

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT--------IITVELPDGFMKLLAM 247
            E +  +GLR S+      +H+      +     G+           +   + ++ L  +
Sbjct: 143 LEVMYGAGLRLSELVGLDCRHMNMASGEVWVLGKGSKERKLPIGRTAIHWLEQWLPLREI 202

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAH 305
                +  F++   ++++       F     K GV  + + H +R   AT   ++     
Sbjct: 203 YDPVDDAVFVSKLGKRISVRSVQKRFAEWGVKQGVTSHINPHKLRHSFATHMLESSGDLR 262

Query: 306 ELMATYGWKTVDQAETYTK 324
            +    G   +   + YT 
Sbjct: 263 AVQELLGHANLTTTQIYTH 281


>gi|304413311|ref|ZP_07394784.1| site-specific tyrosine recombinase [Candidatus Regiella insecticola
           LSR1]
 gi|304284154|gb|EFL92547.1| site-specific tyrosine recombinase [Candidatus Regiella insecticola
           LSR1]
          Length = 252

 Score =  122 bits (306), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 37/231 (16%), Positives = 81/231 (35%), Gaps = 18/231 (7%)

Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
           +  +   +      +  +S+ + L++++  F++  R++    +P   +  PK      + 
Sbjct: 7   LDLQRFFAERIDSHYKATSSARLLSAIKRFFQYLYREKLRINDPTALLSSPKLPQRLPKD 66

Query: 174 WTKEDMQQFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QK 228
            +++ ++   +          + +   E L  +GLR S+     +  +      ++   K
Sbjct: 67  LSEKQVEALLNAPNVDIPLQLRDKTMLEVLYATGLRVSELVGLIISDISLRQGVLRVIGK 126

Query: 229 TGTIITVELPDGFMKLLAMTPIGK----------ETFFINNDKQKMNATQFSIWFKAKAT 278
                 V L +  +  +                 + FF +N  QKM    F    K  A 
Sbjct: 127 GNKERLVPLGEEALYWIEQYIEHGRPWLVNGQALDAFFPSNRCQKMTRQTFWYRIKHYAI 186

Query: 279 KAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            A ++    S H +R   AT   + GA    +    G   +   + YT  A
Sbjct: 187 LANIDSERLSPHVLRHAFATHLLNHGADLRVVQMLLGHSNLSTTQIYTHVA 237


>gi|24115108|ref|NP_709618.1| site-specific tyrosine recombinase XerC [Shigella flexneri 2a str.
           301]
 gi|30064893|ref|NP_839064.1| site-specific tyrosine recombinase XerC [Shigella flexneri 2a str.
           2457T]
 gi|82779010|ref|YP_405359.1| site-specific tyrosine recombinase XerC [Shigella dysenteriae
           Sd197]
 gi|194438678|ref|ZP_03070766.1| tyrosine recombinase XerC [Escherichia coli 101-1]
 gi|253775565|ref|YP_003038396.1| site-specific tyrosine recombinase XerC [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254163753|ref|YP_003046861.1| site-specific tyrosine recombinase XerC [Escherichia coli B str.
           REL606]
 gi|293417277|ref|ZP_06659902.1| tyrosine recombinase XerC [Escherichia coli B185]
 gi|297521542|ref|ZP_06939928.1| site-specific tyrosine recombinase XerC [Escherichia coli OP50]
 gi|300904066|ref|ZP_07121946.1| tyrosine recombinase XerC [Escherichia coli MS 84-1]
 gi|300921478|ref|ZP_07137826.1| tyrosine recombinase XerC [Escherichia coli MS 115-1]
 gi|300930023|ref|ZP_07145455.1| tyrosine recombinase XerC [Escherichia coli MS 187-1]
 gi|301303707|ref|ZP_07209828.1| tyrosine recombinase XerC [Escherichia coli MS 124-1]
 gi|309784527|ref|ZP_07679165.1| tyrosine recombinase XerC [Shigella dysenteriae 1617]
 gi|312971902|ref|ZP_07786076.1| tyrosine recombinase XerC [Escherichia coli 1827-70]
 gi|331655496|ref|ZP_08356489.1| tyrosine recombinase XerC [Escherichia coli M718]
 gi|34222798|sp|Q7ZAL9|XERC_SHIFL RecName: Full=Tyrosine recombinase xerC
 gi|123769525|sp|Q329Y7|XERC_SHIDS RecName: Full=Tyrosine recombinase xerC
 gi|24054376|gb|AAN45325.1| site-specific recombinase [Shigella flexneri 2a str. 301]
 gi|30043153|gb|AAP18875.1| site-specific recombinase [Shigella flexneri 2a str. 2457T]
 gi|81243158|gb|ABB63868.1| site-specific recombinase [Shigella dysenteriae Sd197]
 gi|194422482|gb|EDX38481.1| tyrosine recombinase XerC [Escherichia coli 101-1]
 gi|242379341|emb|CAQ34153.1| site-specific recombinase, acts on cer sequence of ColE1, effects
           chromosome segregation at cell division, subunit of Xer
           site-specific recombination system [Escherichia coli
           BL21(DE3)]
 gi|253326609|gb|ACT31211.1| tyrosine recombinase XerC [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|253975654|gb|ACT41325.1| site-specific tyrosine recombinase XerC [Escherichia coli B str.
           REL606]
 gi|253979810|gb|ACT45480.1| site-specific tyrosine recombinase XerC [Escherichia coli
           BL21(DE3)]
 gi|281603204|gb|ADA76188.1| Tyrosine recombinase xerC [Shigella flexneri 2002017]
 gi|291431045|gb|EFF04040.1| tyrosine recombinase XerC [Escherichia coli B185]
 gi|300403946|gb|EFJ87484.1| tyrosine recombinase XerC [Escherichia coli MS 84-1]
 gi|300411595|gb|EFJ94905.1| tyrosine recombinase XerC [Escherichia coli MS 115-1]
 gi|300462056|gb|EFK25549.1| tyrosine recombinase XerC [Escherichia coli MS 187-1]
 gi|300841007|gb|EFK68767.1| tyrosine recombinase XerC [Escherichia coli MS 124-1]
 gi|308927633|gb|EFP73102.1| tyrosine recombinase XerC [Shigella dysenteriae 1617]
 gi|310334279|gb|EFQ00484.1| tyrosine recombinase XerC [Escherichia coli 1827-70]
 gi|313647147|gb|EFS11602.1| tyrosine recombinase XerC [Shigella flexneri 2a str. 2457T]
 gi|315254176|gb|EFU34144.1| tyrosine recombinase XerC [Escherichia coli MS 85-1]
 gi|323959066|gb|EGB54735.1| tyrosine recombinase XerC [Escherichia coli H489]
 gi|323969348|gb|EGB64647.1| tyrosine recombinase XerC [Escherichia coli TA007]
 gi|331046817|gb|EGI18901.1| tyrosine recombinase XerC [Escherichia coli M718]
          Length = 298

 Score =  122 bits (306), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 44/270 (16%), Positives = 94/270 (34%), Gaps = 20/270 (7%)

Query: 75  ISEYRKSAH-WGSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGVESRKHTP 130
           +  Y +       L+  + ++++   + II    ++G   +++     +R+     +   
Sbjct: 8   VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDAAMVRNFAVRSRRKG 67

Query: 131 SSAIQF---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186
             A      L+++R  F W V Q  +  NP   V  PK      +    +DM +      
Sbjct: 68  LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDIDI 127

Query: 187 --SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT--------VE 236
                 + R   E +  +GLR S+     ++HL      +     G+           V 
Sbjct: 128 NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVA 187

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSA 294
             + ++ L  +     +  F++   ++++A      F     K G+N     H +R   A
Sbjct: 188 WIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFA 247

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324
           T   ++      +    G   +   + YT 
Sbjct: 248 THMLESSGDLRGVQELLGHANLSTTQIYTH 277


>gi|138895282|ref|YP_001125735.1| integrase/recombinase [Geobacillus thermodenitrificans NG80-2]
 gi|134266795|gb|ABO66990.1| Integrase/recombinase [Geobacillus thermodenitrificans NG80-2]
          Length = 301

 Score =  122 bits (306), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 43/295 (14%), Positives = 109/295 (36%), Gaps = 30/295 (10%)

Query: 71  LKWLISEYRKSAH-WGSLAVNSRISFE---SYFDQIIRKSG-DFDYRKITTKHIRSGVES 125
            +  I E+        + ++N+   +      F+  + + G       IT  H+R  ++ 
Sbjct: 3   FRQAIDEFVLYLQIEKNYSLNTVDGYAYDLRCFENFLVQHGYSVQLNSITKTHVRRFIQH 62

Query: 126 R----KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
           +       P +  + ++ ++   K+ V++  +  +  + ++ PK  ++     +  ++++
Sbjct: 63  QITKENVKPRTIYRRISCLKSFSKYCVKENLIDNDFMIGIDTPKTDSKLPTYMSLSELRK 122

Query: 182 FKSFWSE-----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITV 235
              F  +       +  L F+ L  +G+R S+      + +  +  +I+   K      +
Sbjct: 123 LFHFLEQDNSRMAMRNHLLFKLLATTGMRRSEIVELTWEQIDLSNNTIRIYGKGKKERLL 182

Query: 236 ELPDGFMKLLAM--------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---K 284
            L    + L+               +  F+N + +K+N       FK    KAG+     
Sbjct: 183 PLHPMVVPLMKSYMESLEEYQLHPSQPVFLNKNGKKLNPRGLHKIFKDILQKAGLPPQRF 242

Query: 285 SAHGVRKFSATISADAGA---TAHELMATYGWKTVDQAETYTK-GADRIRLGIKN 335
           S H +R   AT+             +    G +++   + YT    ++ +  I+ 
Sbjct: 243 SLHHLRHTFATLLIQENKENVDLRTVQELLGHESLVTTQVYTHVDFEQKKKAIET 297


>gi|21957074|gb|AAM83976.1|AE013639_5 site-specific recombinase [Yersinia pestis KIM 10]
          Length = 308

 Score =  122 bits (306), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 44/259 (16%), Positives = 87/259 (33%), Gaps = 19/259 (7%)

Query: 85  GSLAVNSRISFES---YFDQIIRKSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFLT 138
             L+  +  S+        +I  + G   ++ +    +RS V   K      SS    L+
Sbjct: 28  RQLSPLTVTSYRRQLSALMEIGEQMGLAHWQTLDAAQVRSLVSRSKRAGLHASSLALRLS 87

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLA 195
           ++R    W V Q  +  NP   V  P+      +    +++ +  S         + R  
Sbjct: 88  ALRSFLNWLVSQGVLPANPAKGVSTPRSGRHLPKNIDVDEVNKLLSIDLNDPLAVRDRAM 147

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI--------ITVELPDGFMKLLAM 247
            E +  +GLR S+      +H+      +     G+           V     ++ L  +
Sbjct: 148 LEVMYGAGLRLSELVGMNCKHVDLASGDVWVMGKGSKERKVPLGKTAVTWLQHWLALREL 207

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAH 305
                +  F+ N  ++++A      F     K GV  +   H +R   AT   ++     
Sbjct: 208 FEPQDDAIFLANTGKRISARNVQKRFAEWGVKQGVSSHIHPHKLRHSFATHMLESSGDLR 267

Query: 306 ELMATYGWKTVDQAETYTK 324
            +    G   +   + YT 
Sbjct: 268 AVQELLGHANLTTTQIYTH 286


>gi|307307476|ref|ZP_07587210.1| integrase family protein [Shewanella baltica BA175]
 gi|306910151|gb|EFN40585.1| integrase family protein [Shewanella baltica BA175]
          Length = 451

 Score =  122 bits (306), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 54/307 (17%), Positives = 117/307 (38%), Gaps = 13/307 (4%)

Query: 32  RIRLPYPHESTFIPAYMSALTGSTP--KREYINSPRKKPTTLKWLISEYRKSAHWGSLAV 89
           R R+  P  +  + A     TG     + E+        +     + +  K   +     
Sbjct: 54  RTRILAPVSALTVKAAREKATGQLQAWREEHTQPSMSASSRFDVFVEQTWKPMIFEHWKP 113

Query: 90  NSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKHTP-SSAIQFLTSMRVLFKWA 147
           +++ S     ++ ++   G +    I  + +++  +    T   +A + L +++ +FK A
Sbjct: 114 STKRSVLPALNRRLLAHFGRYPLHMINHRMVQAWFDEISKTRKGAANRNLDTLQSVFKLA 173

Query: 148 VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-----GSQPRLA--FEFLL 200
           +RQ +   NPC+ + + KR+    R  +  +MQ+      E     GS  + A     LL
Sbjct: 174 LRQGHCLTNPCIGIRQNKRRV-LNRFLSVAEMQRLSVALDECETVGGSIAQCADILRLLL 232

Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINND 260
            +G R S+      ++++ N   +   KTG  + + +    + +L+       T      
Sbjct: 233 LTGCRLSEITFLKGEYVRGNELHLPDSKTGAKV-LYIGQAAVDILSRYHCKANTELFPMK 291

Query: 261 KQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
           +    +   S+W + +      +   H +R   A+ +   G +   + +  G K V    
Sbjct: 292 QGASTSLVQSLWLRLRKQIGIEDVRLHDLRHTFASYAVMDGCSIPMVASLLGHKKVTMTL 351

Query: 321 TYTKGAD 327
            YT   D
Sbjct: 352 RYTHVGD 358


>gi|229020853|ref|ZP_04177558.1| Integrase/recombinase [Bacillus cereus AH1273]
 gi|229022059|ref|ZP_04178613.1| Integrase/recombinase [Bacillus cereus AH1272]
 gi|228739211|gb|EEL89653.1| Integrase/recombinase [Bacillus cereus AH1272]
 gi|228740440|gb|EEL90733.1| Integrase/recombinase [Bacillus cereus AH1273]
          Length = 315

 Score =  122 bits (306), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 35/261 (13%), Positives = 92/261 (35%), Gaps = 14/261 (5%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
           ++ +       +L   +   +       I+        +   K++   ++ R    ++  
Sbjct: 36  LNLFYTDCQLRNLRPYTIKYYRESLQTKIKPL--VLMTEDDIKNMIMEMQRRGLKVTTIN 93

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGS 190
             L + +  + +  + +++  NP   ++  K++ E +   +K+ ++   S        G 
Sbjct: 94  TKLRAFKSFYNFLHKHKHIKKNPIADIKLLKQRKEVVPTLSKDQIKLLLSLCDRKTFVGV 153

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP- 249
           +       +L + +R ++     V  +++N   I+  KT     V +     + + +   
Sbjct: 154 RDYTIMMLMLDTAIRVNELANIEVADVKHNEIVIRETKTFFERIVPMSKKLKEQMEIYIK 213

Query: 250 ----IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGA 302
                  +  F+N D  ++         +     +G+     SAH  R  SA +    G 
Sbjct: 214 IRGYAESDKLFLNQDGNELKKRSIQTRIEYYGKLSGIKDVRVSAHTFRHTSAKLFIQNGG 273

Query: 303 TAHELMATYGWKTVDQAETYT 323
            A  L    G  +++  + Y 
Sbjct: 274 NAFHLQQLLGHTSLEITKKYV 294


>gi|71042126|pdb|1Z1B|A Chain A, Crystal Structure Of A Lambda Integrase Dimer Bound To A
           Coc' Core Site
 gi|71042127|pdb|1Z1B|B Chain B, Crystal Structure Of A Lambda Integrase Dimer Bound To A
           Coc' Core Site
          Length = 356

 Score =  122 bits (306), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 60/343 (17%), Positives = 111/343 (32%), Gaps = 25/343 (7%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMS---ALTGSTPKREYINS 63
           LPP +     R+     Y     G+   L          A  +     +G   K      
Sbjct: 12  LPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLTARI 68

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
                 TL   +  Y K      +   + I++ S    I R   D     ITTK I + +
Sbjct: 69  NSDNSVTLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAML 128

Query: 124 ESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
                    +SA    +++   F+ A+ + ++  N   +    K K    R    E ++ 
Sbjct: 129 NGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNHVAATRAAKSKVRRSRLTADEYLKI 188

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE----- 236
           +++  S     RLA E  + +G R  D C      + +    ++  KTG  I +      
Sbjct: 189 YQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTALHI 248

Query: 237 ----LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NKSAH 287
               +            +G ET   +  ++ +++   S +F      +G+       + H
Sbjct: 249 DALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPPTFH 308

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
            +R   +    +   +        G K+   A       DR R
Sbjct: 309 ELR-SLSARLYEKQISDKFAQHLLGHKSDTMASQ--XRDDRGR 348


>gi|294085315|ref|YP_003552075.1| phage integrase family protein [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292664890|gb|ADE39991.1| phage integrase family protein [Candidatus Puniceispirillum marinum
           IMCC1322]
          Length = 396

 Score =  122 bits (306), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 56/330 (16%), Positives = 104/330 (31%), Gaps = 36/330 (10%)

Query: 26  RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG 85
           RKG   R+ +      T   A   AL           +      TL  L++      H  
Sbjct: 54  RKGRPLRMTIGAVQHMTCDAARQRALDH---LATDCGASSDPAITLGALVAGRWHDEHLM 110

Query: 86  SLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHT-PSSAIQFLTSMRVL 143
               +++ ++ +   +Q+I   G      IT + I    +    T P +A + L  +  +
Sbjct: 111 RCKPSTQRTYRNMLQNQLIPNFGTMQLDAITREAIADWFDRFSQTAPGNANRGLILLNQI 170

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---------RL 194
             +AVR   +A N    + + K K +  R  + E++ +      E             R 
Sbjct: 171 LNFAVRHGLLARNVAAGLTKNKGK-KLTRFLSGEELARLYHVMDEHVADCPRTERKQGRD 229

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG--- 251
               L+ +G R  +  R     +  +   +K  KTG    V L      +L         
Sbjct: 230 IVRLLILTGCRKGEILRLRWDEIDGDRLRLKDSKTG-PREVHLSLSARAILDRHKRATRS 288

Query: 252 ----------KETFFINN--DKQKMNA-TQFSIWFKAKATKAGVN-KSAHGVRKFSATIS 297
                         F +     Q + +   F    +    +AG++    H +R   A+ +
Sbjct: 289 HAGGHGSQYRDGYVFPSKICPDQPITSIESFWYAVR---QRAGLDDVRLHDLRHTFASHA 345

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGAD 327
             +G     +    G   +     Y    D
Sbjct: 346 VMSGVPLPVVARLLGHSKISMTMRYAHVGD 375


>gi|262198804|ref|YP_003270013.1| tyrosine recombinase XerD [Haliangium ochraceum DSM 14365]
 gi|262082151|gb|ACY18120.1| tyrosine recombinase XerD [Haliangium ochraceum DSM 14365]
          Length = 299

 Score =  122 bits (306), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 42/283 (14%), Positives = 89/283 (31%), Gaps = 23/283 (8%)

Query: 71  LKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGD---FDYRKITTKHIRSGVESR 126
           +      Y +      +L+V++   +     ++ R   +        +    +   + + 
Sbjct: 7   IDRACDLYFQHLKVERNLSVHTIEGYSRDLARLRRFLAERACIAVASVRPADLADYLLAL 66

Query: 127 KH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
                  S  +   ++R  F++ V + Y+  +P   +  P+          ++ + +  +
Sbjct: 67  ADELGARSRARASAAIRGWFRFLVSERYLERDPAEHLATPRALRPLPVVIGEQAVTELLA 126

Query: 185 F----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPD 239
                   G +     E L  +GLR S+     +  +  +   ++   K      V L +
Sbjct: 127 APPTTTPRGLRDGAMIETLYATGLRVSELVGLLMADVHLDPGYLRVLGKGRKQRLVPLGE 186

Query: 240 GFMKLLAMTPIGK----------ETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHG 288
                +     G              F+    + M    F    K  A   G+   S H 
Sbjct: 187 MACARIEAYVSGARGSFLKNPKQPALFLTGHGKPMTRQGFWKLLKRYARGVGIAEISPHK 246

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           +R   AT   + GA    + A  G   +   + YT    R RL
Sbjct: 247 LRHSFATHLLEHGADLRAVQAMLGHADISTTQIYTH-VSRARL 288


>gi|315186395|gb|EFU20155.1| integrase family protein [Spirochaeta thermophila DSM 6578]
          Length = 312

 Score =  122 bits (306), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 47/290 (16%), Positives = 94/290 (32%), Gaps = 30/290 (10%)

Query: 74  LISEYRKS-AHWGSLAVNSRISFESYF---DQIIRKSGDFDYRKITT--KHIRSGVESRK 127
           LI  +    +H   L+  +  S+ +        + K G           +H  +     +
Sbjct: 16  LIDRFLAHLSHMRGLSEATVRSYRNDLVKVGAFLEKLGTDLVSATREDIRHCVAEYTLAR 75

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
             PSS  + L+S+R  +++  R+     +P   +   K          ++++ +      
Sbjct: 76  QAPSSINRMLSSLRSWYRFLRREGVRIDSPMEGISSVKAGKRLPSFLFEDEVDRLLDIEG 135

Query: 188 ---EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMK 243
                 + R   E L  +G R  +     +  +Q +    +   K G    + L  G  K
Sbjct: 136 SDFASLRDRALLEVLYSTGCRVQELVSLTISGVQVSRGWCVVKGKGGKERLLFLGLGARK 195

Query: 244 LLAM------------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289
            LA                 +   F+N     +     +   + +A + G+ K  S H  
Sbjct: 196 ALAAYLPLRQALLERMGRREEGALFVNQKGSPLTTRGVAYIIERRAREKGLEKRISPHVF 255

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
           R   AT     GA    +    G  ++   + YT       L +   +R+
Sbjct: 256 RHSFATHVLSRGADLRVVQEMLGHASLSTTQVYTH------LSLPALKRM 299


>gi|255262389|ref|ZP_05341731.1| tyrosine recombinase XerD [Thalassiobium sp. R2A62]
 gi|255104724|gb|EET47398.1| tyrosine recombinase XerD [Thalassiobium sp. R2A62]
          Length = 310

 Score =  122 bits (306), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 47/289 (16%), Positives = 98/289 (33%), Gaps = 33/289 (11%)

Query: 74  LISEYRKS-AHWGSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGV---ESRK 127
            IS + ++ A     A N+++++      +    KS    +   T   I + +   +++ 
Sbjct: 8   WISSFLEAQAAELDAARNTQLAYARDLTDVADWLKSKGLHFSSATQGDIENYLIFCDAQG 67

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK---- 183
              S+  + L++++ L+++A  + + A NP + ++ P +     +  + E++ +      
Sbjct: 68  LAKSTRARRLSAVKQLYRFAFEESWRADNPAIQIKGPGKDKRLPKTLSVEEVDRLLEASR 127

Query: 184 ---SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPD 239
                  +  +     E L  +G+R ++     V   + +    +   K      V L  
Sbjct: 128 TSAKSVDDRLRNTCLMELLYATGMRVTELVSLPVSATRGDPRMLLIRGKGDKERMVPLSP 187

Query: 240 GFMKLLA---------------MTPIGKETFFINNDK-QKMNATQFSIWFKAKATKAGV- 282
                LA                        F +  K   +   +F +  K  A   GV 
Sbjct: 188 PARTALADWIKRWDALQDAAVKAGKPRARHLFPSRGKDGHLTRHRFYLMIKEFAVAGGVV 247

Query: 283 --NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
               + H +R   AT     GA    +    G   V   E YT   D  
Sbjct: 248 PSKVTPHTLRHAFATHLLANGADLRSIQTLLGHADVATTEIYTHVLDER 296


>gi|114566378|ref|YP_753532.1| hypothetical protein Swol_0842 [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|114337313|gb|ABI68161.1| conserved hypothetical protein [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
          Length = 290

 Score =  122 bits (306), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 42/239 (17%), Positives = 81/239 (33%), Gaps = 18/239 (7%)

Query: 104 RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163
            + G       + +   + ++ +  + ++  + L ++R   K+  R+  +A NP  +V  
Sbjct: 35  EEVGVELISHNSVRKYLAQMQEKGLSRATMARKLAALRSFIKFLCRENILADNPIAAVST 94

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN 219
           PK++ +  R     ++    +        G + R   E L  SGLR S+        +  
Sbjct: 95  PKQERKLPRFLYTREIDLLMNAPDLSMAAGKRDRAILETLYASGLRVSELTNLDKPDIDF 154

Query: 220 NIFSIKT-QKTGTIITVELPDGFMKLL-----------AMTPIGKETFFINNDKQKMNAT 267
               IK   K G    V L     + L                     F+N + Q+++  
Sbjct: 155 GEDYIKVLGKGGKERIVPLGSKAREALLLYLQQGRVYLEAKGQASPALFLNKNGQRLSTR 214

Query: 268 QFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
                         +N+  S H +R   AT   + GA    +    G   +   + YT 
Sbjct: 215 SIRNIINKYVETIAINQKVSPHTLRHSFATHLLNNGADLRSVQELLGHVKLSTTQIYTH 273


>gi|229110029|ref|ZP_04239606.1| DNA integration/recombination/invertion protein [Bacillus cereus
           Rock1-15]
 gi|228673382|gb|EEL28649.1| DNA integration/recombination/invertion protein [Bacillus cereus
           Rock1-15]
          Length = 369

 Score =  122 bits (306), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 47/312 (15%), Positives = 109/312 (34%), Gaps = 38/312 (12%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE 124
               TLK  ++ + +     S+  ++   ++++ +  +I   G     K+   HI+   +
Sbjct: 60  PSKVTLKDYLNHWLEIKS-MSIEKSTFAGYKAFINQHVIPSIGMVALHKLNVMHIQKCYK 118

Query: 125 SRKHTPSSAIQFLTSMRVL---FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
           +      +    L   R+L      AV+Q  ++ NP    E PK++   I+ WT+E++++
Sbjct: 119 AAIDKGIANNSILLMHRILKSALNLAVKQNIISRNPTDFAEIPKKEKTPIQTWTEEEVKK 178

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--------------NNIFSIKTQ 227
           F +  S+ S+  + +   + +G+R  +      Q +               +N      +
Sbjct: 179 FLA-HSQESRYHIGYLLAITTGMRLGEVLGLRWQDIDFEKHTVTINQTSGHDNKIKTTAK 237

Query: 228 KTGTIITVELPDGFMKLLAMTPI--------------GKETFFINNDKQKMNATQFSIWF 273
              +  T+ +P+  +  L    I               ++    N   + +    F   F
Sbjct: 238 TNSSKRTIPVPNETIAALKKHKILINKEKLRFGSAYLDQDLINCNEFGRIIKRAHFRKSF 297

Query: 274 KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRL 331
                K G+ +   H +R   AT+    G     +    G   +      Y+       +
Sbjct: 298 IRMTHKVGIKEIKFHDLRHTHATLLLKQGVNPKIISERLGHTDISMTLSIYSHVL--PNM 355

Query: 332 GIKNSRRISSVV 343
             +  +     +
Sbjct: 356 QEEAVKNFGKSI 367


>gi|331675279|ref|ZP_08376030.1| tyrosine recombinase XerC [Escherichia coli TA280]
 gi|331067565|gb|EGI38969.1| tyrosine recombinase XerC [Escherichia coli TA280]
          Length = 298

 Score =  122 bits (306), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 43/270 (15%), Positives = 92/270 (34%), Gaps = 20/270 (7%)

Query: 75  ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRK 127
           +  Y +       L+  + ++++   + II  + +   +          ++       + 
Sbjct: 8   VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKG 67

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186
              +S    L+++R  F W V Q  +  NP   V  PK      +    +DM +      
Sbjct: 68  LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDIDI 127

Query: 187 --SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT--------VE 236
                 + R   E +  +GLR S+     ++HL      +     G+           V 
Sbjct: 128 NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVA 187

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSA 294
             + ++ L  +     +  F++   ++++A      F A   K G+N     H +R   A
Sbjct: 188 WIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAAWGIKQGLNNHVHPHKLRHSFA 247

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324
           T   ++      +    G   +   + YT 
Sbjct: 248 THMLESSGDLRGVQELLGHANLSTTQIYTH 277


>gi|297242743|ref|ZP_06926681.1| site-specific recombinase XerD [Gardnerella vaginalis AMD]
 gi|296888954|gb|EFH27688.1| site-specific recombinase XerD [Gardnerella vaginalis AMD]
          Length = 322

 Score =  122 bits (306), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 52/285 (18%), Positives = 104/285 (36%), Gaps = 34/285 (11%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGV--ESRK 127
           LI +Y         L   ++ ++ S          + G  +  ++TT  +RS +  ESR 
Sbjct: 21  LIDDYIDYVRANKGLGERTQKAYASDILQCLAWCNRHGFNNISELTTDDLRSWMADESRS 80

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----- 182
           H  SS  + + ++R  F W    EY++ NP   +  PK K        +   +       
Sbjct: 81  HARSSLARKVVAVRGFFAWCQHVEYISSNPAEILMTPKIKNMLPSVLDEYQAESLMNNVD 140

Query: 183 ----------KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTG 230
                     K+  + G +     E L  +G+R  +     +Q +   ++   +  +   
Sbjct: 141 SKANVSSSCTKNQKAVGLRNAAILELLYATGIRVGELTSLNIQDINFSSHTIKVTGKGNK 200

Query: 231 TIITVELPDGFMKLLA-MTPIGKETF---------FINNDKQKMNATQFSIWFKAKATKA 280
             +       +  L A ++  G+E           F+    ++++          +A  A
Sbjct: 201 QRVVPFGVPAYKALSAWISKDGREILLRNSVEEAAFLGTRGKRIDQRLVRRIVHDEAKSA 260

Query: 281 GV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            V + S H +R  +AT   + GA   E+    G  +++  + YT 
Sbjct: 261 HVPDISPHALRHSAATHMLNGGADLREVQELLGHSSLNTTQRYTH 305


>gi|312797553|ref|YP_004030475.1| integrase/recombinase (XerC/CodV family) [Burkholderia rhizoxinica
           HKI 454]
 gi|312169328|emb|CBW76331.1| Integrase/recombinase (XerC/CodV family) [Burkholderia rhizoxinica
           HKI 454]
          Length = 312

 Score =  122 bits (306), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 52/279 (18%), Positives = 96/279 (34%), Gaps = 30/279 (10%)

Query: 75  ISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTP 130
           I+ Y  S AH   L+ ++   +    D + + +G  +  ++T   +R  V        +P
Sbjct: 8   IARYLDSLAHERRLSAHTLRGYAHELDMLRQLAGTRELTQLTPVDVRGAVSRAHSGGLSP 67

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFW 186
            S    L+  R  ++W    + + +NP   V  PKR     +  + +D    M+      
Sbjct: 68  RSIAHRLSVWRSFYRWLALHQPLTMNPVAGVRAPKRAKTLPKALSVDDAVTLMEASCIET 127

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN------NIFSIKT------QKTGTIIT 234
            +  + R   E     GLR ++     +  +            + T       K G   T
Sbjct: 128 PDALRDRAMLELFYSCGLRLAELIGLDIAFVNTAQYRSVGWIDLGTADVTVLGKGGKRRT 187

Query: 235 VEL----PDGFMKLLAM----TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NK 284
           V +     D   + LA+            F++    +M+A       +  A  AGV  + 
Sbjct: 188 VPIGSKALDALHRWLAVRDQLLKHDPHPLFLSARGMRMSAGVVRERVRRAALAAGVPSHV 247

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
             H +R   AT    +      +    G  +V   + YT
Sbjct: 248 HPHVLRHSFATHLLQSSGDLRAVQELLGHASVAATQVYT 286


>gi|254463512|ref|ZP_05076928.1| tyrosine recombinase XerD [Rhodobacterales bacterium HTCC2083]
 gi|206680101|gb|EDZ44588.1| tyrosine recombinase XerD [Rhodobacteraceae bacterium HTCC2083]
          Length = 314

 Score =  122 bits (306), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 39/269 (14%), Positives = 87/269 (32%), Gaps = 32/269 (11%)

Query: 88  AVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGV---ESRKHTPSSAIQFLTSMRV 142
           A N+++++                 +      H+ + +   +++    S+  + L++++ 
Sbjct: 25  ATNTQLAYARDLKDFAEYLSGRKLSFENAARDHVEAYLIFCDAQGLAKSTRARRLSAIKQ 84

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE---GSQPRLA---- 195
           L+++   + + + NP + +  P +     +     ++    +           RL     
Sbjct: 85  LYRFGFEEGWRSDNPAIQIAGPGKDKRLPKTLNMGEVDGLLAAARVVGRSPTDRLRNTCL 144

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVEL--------------PDG 240
            E L  +G+R S+     +   + N    +   K      V L               D 
Sbjct: 145 MELLYATGMRVSELVSLPISAARGNPSMLLIRGKGDKERMVPLSPPARDALTEWLETLDD 204

Query: 241 FMKLLAMTPIGKETFFINNDKQ--KMNATQFSIWFKAKATKAGV---NKSAHGVRKFSAT 295
             +   +       F   +  +   +   +F I  K  +  AGV     + H +R   AT
Sbjct: 205 LQEAGRLKGKAVSRFLFPSRGKEGHLTRHRFYILIKELSVHAGVPPAKVTPHTLRHAFAT 264

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTK 324
              + GA    +    G   V   E YT 
Sbjct: 265 HLLENGADLRSIQTLLGHADVATTEIYTH 293


>gi|227495411|ref|ZP_03925727.1| possible integrase/recombinase [Actinomyces coleocanis DSM 15436]
 gi|226830958|gb|EEH63341.1| possible integrase/recombinase [Actinomyces coleocanis DSM 15436]
          Length = 317

 Score =  122 bits (306), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 46/274 (16%), Positives = 89/274 (32%), Gaps = 34/274 (12%)

Query: 85  GSLAVNSRISFESYFDQ--IIRKSGDFDYRKITT----KHIRSGVESRKHTPS----SAI 134
              + ++   +    ++  + R   D    ++ T     H+          P     S  
Sbjct: 25  KGASAHTVAGYRRDLERFLVERGIADTPLAQVDTVAIDAHLTQLSLGFAGKPGLSAASIA 84

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-----SEG 189
           +   S+R LF++AV ++ ++ +P   V++ K      +  + E++              G
Sbjct: 85  RARASIRALFRYAVSEDILSADPAAEVQQKKLGKHLPKAISLEEIAAMLEVAGQRPGPVG 144

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKT-QKTGTIITVELPDGFMKLL- 245
            +     E L  +G R ++        L        +K   K      V L    ++ L 
Sbjct: 145 LRDVALIELLYGTGARITEVMNLSPDDLYLAGEFPHVKLFGKGRKERLVPLGSFAVQALE 204

Query: 246 -------------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVR 290
                        A T +     F+N     ++           A  AG     S H +R
Sbjct: 205 DYLLLGRPLLLGKAKTRVAGHPLFLNKRGLSLSRQSAWEIISQTAVAAGCVSEVSPHSLR 264

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              AT   + GA+  ++    G  +V   + YTK
Sbjct: 265 HSFATHLLEGGASIRDVQELLGHASVTTTQIYTK 298


>gi|325289988|ref|YP_004266169.1| tyrosine recombinase XerD subunit [Syntrophobotulus glycolicus DSM
           8271]
 gi|324965389|gb|ADY56168.1| tyrosine recombinase XerD subunit [Syntrophobotulus glycolicus DSM
           8271]
          Length = 315

 Score =  122 bits (306), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 41/280 (14%), Positives = 87/280 (31%), Gaps = 34/280 (12%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
             L+ N+  S+     +++    +     F  + +        V  +  +  S  ++  +
Sbjct: 17  RGLSGNTCQSYRRDLKKLLIYLEENQNNLFQCQPVDLFSFLYSVNEQGISARSIARYTAA 76

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS--------- 190
           ++  F +   +     +P   +  PK +       ++  +    +   +           
Sbjct: 77  LKGFFSYLSDEGKRTDDPTELIVVPKLEQPLPHVLSESAVNSLINHRDDKESQAGMLLEI 136

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDG--------- 240
           +     E L  SGLR S+     +  +   +  ++ +  G     V L +          
Sbjct: 137 RDTAILEVLYGSGLRVSELITLSLNQISLEVGYVRCRGKGNKERIVPLSEPCLLALQKYL 196

Query: 241 -------FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK--AGVNKSAHGVRK 291
                    K    T     + F+N    ++         K +A K  AG     H +R 
Sbjct: 197 LEARNHLLRKNRKPTTAESNSLFLNARGGRLTRQGIWTILKNRAVKNKAGAKIYPHLMRH 256

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330
             AT   D GA    +    G   +   + YT    +R+R
Sbjct: 257 CFATHLLDHGADLRSVQEMLGHADISTTQIYTHLTKNRLR 296


>gi|229190701|ref|ZP_04317697.1| DNA integration/recombination/invertion protein [Bacillus cereus
           ATCC 10876]
 gi|228592834|gb|EEK50657.1| DNA integration/recombination/invertion protein [Bacillus cereus
           ATCC 10876]
          Length = 369

 Score =  122 bits (306), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 47/312 (15%), Positives = 109/312 (34%), Gaps = 38/312 (12%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE 124
               TLK  ++ + +     S+  ++   + ++ +  +I   G     K+   HI+   +
Sbjct: 60  PSKVTLKDYLNHWLEIKS-ISIEKSTFAGYRAFINQHVIPSIGMVALHKLNVIHIQKCYK 118

Query: 125 SRKHTPSSAIQFLTSMRVL---FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
           +      +    L   R+L      AV+Q  ++ NP    E PK++   I+ WT+E++++
Sbjct: 119 TAIDKGIANNSILLMHRILKSALNLAVKQNIISRNPADFAEIPKKEKPPIQTWTEEEVKK 178

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--------------NNIFSIKTQ 227
           F +  S+ S+  + +   + +G+R  +      Q +               +N      +
Sbjct: 179 FLA-HSQESRYHIGYLLAITTGMRLGEVLGLRWQDIDFEKHTVTINQTSGHDNKIKKTAK 237

Query: 228 KTGTIITVELPDGFMKLLAMTPI--------------GKETFFINNDKQKMNATQFSIWF 273
              +  T+ +P+  ++ L    I               ++    N   + +    F   F
Sbjct: 238 TNSSKRTIPVPNETIEALKKHKILINKEKLRFGSAYLDQDLINCNEFGRIIKRAHFRKSF 297

Query: 274 KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRL 331
                K G+ +   H +R   AT+    G     +    G   +      Y+       +
Sbjct: 298 IRMTHKVGIKEIKFHDLRHTHATLLLKQGVNPKIISERLGHTDISMTLSVYSHVL--PNM 355

Query: 332 GIKNSRRISSVV 343
             +  +     +
Sbjct: 356 QEEAVKNFGKSI 367


>gi|118581964|ref|YP_903214.1| phage integrase family protein [Pelobacter propionicus DSM 2379]
 gi|118504674|gb|ABL01157.1| phage integrase family protein [Pelobacter propionicus DSM 2379]
          Length = 402

 Score =  122 bits (306), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 52/314 (16%), Positives = 102/314 (32%), Gaps = 23/314 (7%)

Query: 46  AYMSALTGSTPKREYINSPRKKPTTLKWLISE-YRKSAHWGSLA-VNSRISFESYFDQII 103
           A   AL              +   T +   ++ Y   A        + +   E   + I 
Sbjct: 87  AEHKALLARDKDPAAERGKVRADLTFEEFSTQHYLPHAKAHKQTWDDDKNQIERRLNPI- 145

Query: 104 RKSGDFDYRKITTKHIRSGVESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV 161
              G    + IT + +       K   T  +A   L +++ +   AV+   +  NP    
Sbjct: 146 --LGKLRLQAITPRDVAMVHSKEKERTTACTANHLLATLKRMLNLAVKWGLLEKNPAGGQ 203

Query: 162 ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHL-- 217
           E+ K      R  +KE++ +F     +        A   LLY+G R  +      +++  
Sbjct: 204 EKFKEGPLRERYLSKEELPKFLKALEDQDDLLSVAALRMLLYTGCRREEIMSLRWENVRL 263

Query: 218 QNNIFSIKTQKTGTIITVELPDGFMKLLAMT---------PIGKETFFINNDKQKMNA-T 267
                 +   K G   TV L     +++              G E  F +    K     
Sbjct: 264 DEERIFLPKTKNGRSRTVHLNARAKEVIQDLQARKDQEDRTRGSEYVFPSRQGTKKGYIY 323

Query: 268 QFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-G 325
                F+     AG++    H +R   A+++  +GA  + +    G + +   + Y    
Sbjct: 324 DLRKPFEKACLNAGIDNFRIHDLRHTFASMAVSSGADLYAVQRLLGHQDIAMTQRYAHLN 383

Query: 326 ADRIRLGIKNSRRI 339
           AD ++   +    +
Sbjct: 384 ADDLKKATEGVSEM 397


>gi|315618491|gb|EFU99077.1| tyrosine recombinase XerC [Escherichia coli 3431]
          Length = 282

 Score =  122 bits (306), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 41/259 (15%), Positives = 88/259 (33%), Gaps = 19/259 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRKHTPSSAIQFLT 138
             L+  + ++++   + II  + +   +          ++       +    +S    L+
Sbjct: 3   RQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKGLGAASLALRLS 62

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLA 195
           ++R  F W V Q  +  NP   V  PK      +    +DM +            + R  
Sbjct: 63  ALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDIDINDPLAVRDRAM 122

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT--------VELPDGFMKLLAM 247
            E +  +GLR S+     ++HL      +     G+           V   + ++ L  +
Sbjct: 123 LEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVAWIEHWLDLRDL 182

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAH 305
                +  F++   ++++A      F     K G+N     H +R   AT   ++     
Sbjct: 183 FGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFATHMLESSGDLR 242

Query: 306 ELMATYGWKTVDQAETYTK 324
            +    G   +   + YT 
Sbjct: 243 GVQELLGHANLSTTQIYTH 261


>gi|167764388|ref|ZP_02436513.1| hypothetical protein BACSTE_02776 [Bacteroides stercoris ATCC
           43183]
 gi|167697793|gb|EDS14372.1| hypothetical protein BACSTE_02776 [Bacteroides stercoris ATCC
           43183]
          Length = 294

 Score =  122 bits (306), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 42/263 (15%), Positives = 96/263 (36%), Gaps = 23/263 (8%)

Query: 85  GSLAVNSRISFESYFDQI----IRKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFL 137
            + +  +   + +   ++     +  GD     +    IR  +     + + P++  + L
Sbjct: 15  RNYSEGTVRYYRTDILELQKFGEKLLGDLAPSDVGVDLIREWIVSLMDKGYAPNTVNRKL 74

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-----EGSQP 192
           +S+R  +K+ +++  VA +P   V  PK+K        + ++ +           EG + 
Sbjct: 75  SSVRTYYKYLLKKGLVAADPLRRVTGPKKKKPLPVFLREGEVDRLLDDVDFGERFEGYRD 134

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLA----- 246
           RL  E    +G+R S+      + +  +   IK T K      +       + +      
Sbjct: 135 RLIIEMFYTTGMRLSELIGLDDKDVDFSASLIKVTGKRNKQRLIPFDKELGRSMQEYVNV 194

Query: 247 ---MTPIGKETFFINNDKQKMNATQFSIWFKA--KATKAGVNKSAHGVRKFSATISADAG 301
                P+  + FF+  + +++     +   +           +S H +R   AT   + G
Sbjct: 195 RNQALPVRSDAFFVRKNGERLGRGIVAYIVRRNLSKVVTVKKRSPHVLRHTFATAMLNNG 254

Query: 302 ATAHELMATYGWKTVDQAETYTK 324
           A    +    G +++   E YT 
Sbjct: 255 ADLSSIKELLGHESLATTEVYTH 277


>gi|330836616|ref|YP_004411257.1| Tyrosine recombinase xerC [Spirochaeta coccoides DSM 17374]
 gi|329748519|gb|AEC01875.1| Tyrosine recombinase xerC [Spirochaeta coccoides DSM 17374]
          Length = 309

 Score =  122 bits (306), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 46/277 (16%), Positives = 89/277 (32%), Gaps = 23/277 (8%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQII-----RKSGDFDYRKITTKHIRSGVE 124
           +  L+ EYR+       L+  +   +     + +     R  G  + +  T         
Sbjct: 6   ISQLLEEYREHLLLERRLSPATVNVYVPVVREYVSFLETRGIGAEEAQADTISGYFIHKG 65

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
                  +  + ++++R   ++ +  +    NP   ++ PK      R    + +     
Sbjct: 66  QAGLGTRTLARNMSALRSFHRFLLLNDIRNDNPFELLDSPKLPRTLPRTMDYDSVDDILH 125

Query: 185 FWSE-----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELP 238
                      + R  FE +   GLR S+     ++     +     T K      V + 
Sbjct: 126 EMELDDAIYARRDRAIFEVIYSCGLRVSELASLRIEDYSPESRLLRITGKRNKQRIVPVG 185

Query: 239 DGFMKLL---------AMTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGVNKSAH 287
           D   +L+         A  P G+ +   F+N   Q ++       FK    + GV    H
Sbjct: 186 DVAAELIDEYIISVRPAFIPKGRSSRFLFLNRYGQSLSRVMIWKLFKKYCMRIGVEAKVH 245

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            +R   AT    AGA    +    G   +   + YT 
Sbjct: 246 TLRHSYATHLLKAGADLRSVQELLGHSDIRTTQIYTH 282


>gi|242237692|ref|YP_002985873.1| site-specific tyrosine recombinase XerC [Dickeya dadantii Ech703]
 gi|242129749|gb|ACS84051.1| tyrosine recombinase XerC [Dickeya dadantii Ech703]
          Length = 302

 Score =  122 bits (306), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 41/260 (15%), Positives = 91/260 (35%), Gaps = 21/260 (8%)

Query: 85  GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFLT 138
             L+  +  S++     I   + +SG  D+R++    +RS     K    + +S  Q L+
Sbjct: 22  RRLSPLTLRSYQHQLQVIASTLEESGISDWRRLDAAGVRSLAARGKRDGLSAASLAQRLS 81

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLA 195
           ++R    W V +  ++ NP   V  PK      +    ++  +  +         + R  
Sbjct: 82  ALRSFLDWLVSRGELSANPARGVSAPKAGRHLPKNMDVDETDRLLAIDLNDPLAVRDRAM 141

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMT----- 248
            E +  +GLR ++      +HL   +    +   K      + +    +  L        
Sbjct: 142 LEVMYGAGLRLAELVGLDCRHLDLADGEIWV-LGKGSKERRLPIGATAVAWLRRWLDVRE 200

Query: 249 --PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATA 304
                 +  F+++  ++++       F     K G+  +   H +R   AT   ++    
Sbjct: 201 IYAPDDDAVFVSSRGKRISMRNVQKRFAEWGVKQGISSHVHPHKLRHSFATHMLESSGDL 260

Query: 305 HELMATYGWKTVDQAETYTK 324
             +    G   +   + YT 
Sbjct: 261 RAVQELLGHANLSTTQIYTH 280


>gi|227114723|ref|ZP_03828379.1| site-specific tyrosine recombinase XerC [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 311

 Score =  122 bits (306), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 48/285 (16%), Positives = 99/285 (34%), Gaps = 22/285 (7%)

Query: 62  NSPRKKPTT--LKWLISEYRKSAH-WGSLAVNSRISFESYFDQ---IIRKSGDFDYRKIT 115
            +P + P++  L+  +  + +       L+  ++ S+         I+  +G  D+R + 
Sbjct: 5   PAPSETPSSSPLQADVDAFLRYLKVERQLSPLTQTSYLRQLSAVITILSAAGVADWRNLD 64

Query: 116 TKHIRSGVESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
              +RS V   K      SS    L+++R    W V +  +  NP   V  P+      +
Sbjct: 65  ASGVRSVVSRSKRDGLHSSSLALRLSALRSFLDWMVSRGVLVANPAKGVSAPRAGRPLPK 124

Query: 173 PWTKEDMQQFKSFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229
               ++  +            + R   E +  +GLR ++      QH+      +     
Sbjct: 125 NMDVDETNRLLEIDLDDPLAVRDRTMLEVMYGAGLRLAELVGMDYQHIDLASGEVWVMGK 184

Query: 230 GTI--------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281
           G+           V   + +M L  +     +  FI+N  ++++       F     K G
Sbjct: 185 GSKERKLPIGKTAVTWLERWMALRELFGPQDDAVFISNQGRRISMRNVQKRFAEWGIKQG 244

Query: 282 VN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +N     H +R   AT   ++      +    G   +   + YT 
Sbjct: 245 INSHVHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTH 289


>gi|187935362|ref|YP_001884797.1| phage integrase family protein [Clostridium botulinum B str. Eklund
           17B]
 gi|187723515|gb|ACD24736.1| phage integrase family protein [Clostridium botulinum B str. Eklund
           17B]
          Length = 385

 Score =  122 bits (306), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 54/379 (14%), Positives = 126/379 (33%), Gaps = 52/379 (13%)

Query: 13  KERTRHGKIIYYF--RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
             R R  K  YYF   K  G+R ++     +T   A  +     +          +   +
Sbjct: 4   SVRKRGNKWYYYFDVAKSDGKRKKIERAGGNTKKEALEALRKALSEYDNVGTIITESNIS 63

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           +      +       +   ++++S++    + +    G +  +KIT+  ++  +  +   
Sbjct: 64  VSDYFDYWFNEYVLINCKYSTQVSYKRLIKNHLKPSLGIYQLKKITSSRLQELINLKYRN 123

Query: 130 PSSAIQF---LTSMRVLFKWAV-RQEYVAINPCLSVERPKRKTEGI------RPWTKEDM 179
             S          +   FK+AV    ++  NP   V+ PK  T+ I      +  T ED 
Sbjct: 124 GFSKNYLGNLYGVLSGAFKYAVYPSNFIKENPMTFVKMPKYNTKLINNPDDLKIITLEDY 183

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK----------- 228
                 +  GS   +  +    +GLR ++        +     +++ +K           
Sbjct: 184 NNILKRFPYGSNMYIPLQISFNTGLRAAEVMSLTWDCIDFENQTLRVEKILYRNEFKKWV 243

Query: 229 ------TGTIITVELPDGFMKLLAMTPIGK----------------ETFFINNDKQKMNA 266
                   +  T+++ +  + LL      +                +   +  + + +  
Sbjct: 244 FGSPKTHSSYRTIKIGNTLLSLLKKFHKDQKENKLRYGPFYVKHDYDFVCLKENGELLTT 303

Query: 267 TQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK- 324
                  K    + G++   H +R   AT+  +AGA   ++    G   +    + Y+  
Sbjct: 304 DSLKYLSKVVNYELGIDFKFHSLRHTHATMLLEAGANIKDIQQRLGHSKLATTMDVYSHV 363

Query: 325 ----GADRIRLGIKNSRRI 339
                 D +RL  +  +++
Sbjct: 364 TKKMSQDSVRLFEEAIKKL 382


>gi|226227035|ref|YP_002761141.1| tyrosine recombinase XerD [Gemmatimonas aurantiaca T-27]
 gi|226090226|dbj|BAH38671.1| tyrosine recombinase XerD [Gemmatimonas aurantiaca T-27]
          Length = 312

 Score =  122 bits (306), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 46/268 (17%), Positives = 90/268 (33%), Gaps = 26/268 (9%)

Query: 88  AVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFLTSMR 141
           +  +  ++     +    +R  G    + IT   +R  V   K      SS  + ++++R
Sbjct: 36  SPRTIEAYRRDVIRCAAQMRAMGITQAKDITPAALREFVYHLKDLGLAGSSIRRNISALR 95

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFE 197
             F+  V +  V  +P   ++ P+R        + +++ +  +          + R   E
Sbjct: 96  TWFRIMVAEGLVTTDPTERLDSPQRWRTLPEVLSVDEVTRLLAAPGLDERLAFRDRAMLE 155

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVEL-----------PDGFMKLL 245
               +GLR S+     V+ +      ++   K      V +                 +L
Sbjct: 156 LAYGAGLRVSEWIGMSVKDVMLEDSLVRVLGKGNKERLVPIGRSAIGAVAVYLRELRPVL 215

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGAT 303
                GK   F+N     ++        +     AG+ K  S H +R   AT   + GA 
Sbjct: 216 ERG-GGKGILFLNGRGAPLSRMGAWKLVRKYVGMAGIEKPVSPHTLRHSFATHLLEGGAD 274

Query: 304 AHELMATYGWKTVDQAETYTKGADRIRL 331
              +    G   +   + YT   DR  L
Sbjct: 275 LRAVQEMLGHADIATTQIYTH-VDREYL 301


>gi|54298066|ref|YP_124435.1| hypothetical protein lpp2123 [Legionella pneumophila str. Paris]
 gi|53751851|emb|CAH13275.1| hypothetical protein lpp2123 [Legionella pneumophila str. Paris]
          Length = 353

 Score =  122 bits (306), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 59/340 (17%), Positives = 116/340 (34%), Gaps = 36/340 (10%)

Query: 11  VTKERTRHGKIIYYFRKGHGRRIRLPY-PHESTFIPAYMSALTGSTPKREYINSPR---- 65
           + K  ++ GKI Y        +IRL   P +         A          I   R    
Sbjct: 4   IEKRTSKEGKISYRV------KIRLKGFPTQHATFERLTDARKWVQQTESAIREGRHFKT 57

Query: 66  --KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
              K  TL  +I  Y K          +  +   + +    + G +   +++   I    
Sbjct: 58  TEAKRRTLGEMIDRYIK--DVIQEKPKNLKNRVLHLNWWKEELGQYSLAELSPAMIAEKR 115

Query: 124 ESR---------KHTPSSAIQFLTSMRVLFKWAV-RQEYVAINPCLSVERPKRKTEGIRP 173
           +           K +PS+ ++++ S+   F  AV    ++  +P   V +PK     +R 
Sbjct: 116 DKLSAGITSRNLKRSPSTVVRYMASLSHAFTIAVKEWGWLEDSPMRRVTKPKEPRGRVRF 175

Query: 174 WTKEDMQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKT 229
            + ++  +  S   +     L  A    L +G R  +      +++    +I ++   K 
Sbjct: 176 LSDDERARLLSECKKSDSQYLYLAVVLALSTGGRKMEILGLSWKNVDFNRSIITLHETKN 235

Query: 230 GTIITVEL----PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NK 284
           G    + L     D   +   +  +  +  F   D +          F+    +AG+ + 
Sbjct: 236 GERRVLPLTGHALDLMKQHAKVRHVNSDLVFPGKDFK--TPIDLRTPFETALKRAGITDF 293

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             H +R   A+  A  GA+  E+    G KT+   + Y  
Sbjct: 294 RWHDLRHSCASYLAMNGASLAEIAEILGHKTLQMVKRYAH 333


>gi|157825624|ref|YP_001493344.1| site-specific tyrosine recombinase XerD [Rickettsia akari str.
           Hartford]
 gi|157799582|gb|ABV74836.1| site-specific tyrosine recombinase XerD [Rickettsia akari str.
           Hartford]
          Length = 306

 Score =  122 bits (306), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 52/287 (18%), Positives = 104/287 (36%), Gaps = 39/287 (13%)

Query: 75  ISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRK--ITTKHIRSGVESRKHT-- 129
           IS++ +      +L+ NS +S++                   ITT ++R  +E   +   
Sbjct: 4   ISQFLEMLLAERALSKNSILSYKRDLCDFQNYLAKQRLSALNITTANVRDWIEYLANNDL 63

Query: 130 -PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-- 186
              S  + +++++  +++ + + +   NP L+V+ PK + +     + + ++    +   
Sbjct: 64  QARSINRKISTVKNYYEFLISENHTTFNPVLNVDLPKYQNKLPEILSIDQIKSLLEYCSQ 123

Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN---------IFSIKTQKTGTIIT 234
               EG +       L  SGLR S+     +  +  N         IFS+  +     + 
Sbjct: 124 DNSPEGIRLNAMIHLLYASGLRVSELVSLKLSDILTNKTSKGEVRKIFSVLGKGNKERVI 183

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQK--------------MNATQFSIWFKAKATKA 280
           V      + +     I     F+N  K K              M    F+I  K+ A  A
Sbjct: 184 VINEQAVISIAKYLAIRD--IFVNKAKPKNLIYLFPSSALTGYMTRQNFAILLKSAALYA 241

Query: 281 GVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            +N    S H +R   A+   + GA    +    G   +   + YT 
Sbjct: 242 NLNPEHVSPHILRHSFASHLLEGGADLRVIQDLLGHSDISTTQIYTH 288


>gi|291484165|dbj|BAI85240.1| site-specific tyrosine recombinase XerC [Bacillus subtilis subsp.
           natto BEST195]
          Length = 304

 Score =  122 bits (305), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 38/248 (15%), Positives = 89/248 (35%), Gaps = 22/248 (8%)

Query: 99  FDQIIRKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI 155
           F+  +R  G   + +   +  R  +     +  +  +  + ++++R  +K+ +R++ +  
Sbjct: 36  FETFLRVQGINGFEEAAYQDTRIFLTEAYEKGLSRRTISKKISALRSFYKFLMREKLIEE 95

Query: 156 NPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCR 211
           NP   V  PK++    +   ++++++           G + +   E L  +G+R S+ C 
Sbjct: 96  NPFQLVHLPKQEKRIPKFLYQKELEELFEVSDISQPAGMRDQALLELLYATGMRVSECCS 155

Query: 212 AGVQHLQNNIFSIKTQKTGTI-------------ITVELPDGFMKLLAMTPIGKETFFIN 258
             +  +   + ++     G               + V +  G   LL       +  F+N
Sbjct: 156 ITINDVDLFMDTVLVHGKGKKQRYIPFGSYAREALKVYMNSGRQCLLMKAKEPHDLLFVN 215

Query: 259 NDKQKMNATQFSIWFKAKATKAG--VNKSAHGVRKFSATISADAGATAHELMATYGWKTV 316
                + A            KA   ++   H +R   AT   + GA    +    G   +
Sbjct: 216 QRGGPLTARGIRHILSGLVQKASSTLHIHPHMLRHTFATHLLNEGADLRSVQELLGHSNL 275

Query: 317 DQAETYTK 324
              + YT 
Sbjct: 276 SSTQIYTH 283


>gi|16078677|ref|NP_389496.1| site-specific tyrosine recombinase XerC [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221309489|ref|ZP_03591336.1| site-specific tyrosine recombinase XerC [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221313814|ref|ZP_03595619.1| site-specific tyrosine recombinase XerC [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221318738|ref|ZP_03600032.1| site-specific tyrosine recombinase XerC [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221323009|ref|ZP_03604303.1| site-specific tyrosine recombinase XerC [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|321315380|ref|YP_004207667.1| site-specific tyrosine recombinase XerC [Bacillus subtilis BSn5]
 gi|729174|sp|P39776|XERC_BACSU RecName: Full=Tyrosine recombinase xerC
 gi|535348|gb|AAB03369.1| CodV [Bacillus subtilis subsp. subtilis str. JH642]
 gi|2633986|emb|CAB13487.1| site-specific tyrosine recombinase for chromosome partitioning
           [Bacillus subtilis subsp. subtilis str. 168]
 gi|320021654|gb|ADV96640.1| site-specific tyrosine recombinase XerC [Bacillus subtilis BSn5]
          Length = 304

 Score =  122 bits (305), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 38/248 (15%), Positives = 89/248 (35%), Gaps = 22/248 (8%)

Query: 99  FDQIIRKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI 155
           F+  +R  G   + +   +  R  +     +  +  +  + ++++R  +K+ +R++ +  
Sbjct: 36  FETFLRVQGINGFEEAAYQDTRIFLTEAYEKGLSRRTISKKISALRSFYKFLMREKLIEE 95

Query: 156 NPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCR 211
           NP   V  PK++    +   ++++++           G + +   E L  +G+R S+ C 
Sbjct: 96  NPFQLVHLPKQEKRIPKFLYQKELEELFEVSDISQPAGMRDQALLELLYATGMRVSECCS 155

Query: 212 AGVQHLQNNIFSIKTQKTGTI-------------ITVELPDGFMKLLAMTPIGKETFFIN 258
             +  +   + ++     G               + V +  G   LL       +  F+N
Sbjct: 156 ITINDVDLFMDTVLVHGKGKKQRYIPFGSYAREALKVYMNSGRQCLLMKAKEPHDLLFVN 215

Query: 259 NDKQKMNATQFSIWFKAKATKAG--VNKSAHGVRKFSATISADAGATAHELMATYGWKTV 316
                + A            KA   ++   H +R   AT   + GA    +    G   +
Sbjct: 216 QRGGPLTARGIRHILSGLVQKASSTLHIHPHMLRHTFATHLLNEGADLRSVQELLGHSNL 275

Query: 317 DQAETYTK 324
              + YT 
Sbjct: 276 SSTQIYTH 283


>gi|258508408|ref|YP_003171159.1| tyrosine recombinase XerD [Lactobacillus rhamnosus GG]
 gi|257148335|emb|CAR87308.1| Tyrosine recombinase xerD [Lactobacillus rhamnosus GG]
          Length = 299

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 81/235 (34%), Gaps = 23/235 (9%)

Query: 111 YRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170
              +  +   + +  +    +S  + ++S+R  +++ VR + V  NP   VE  K+    
Sbjct: 49  VDDLDVQTYLTDLNKQALARTSIARKISSLRSFYRYLVRIDVVKRNPFELVELKKQHHHL 108

Query: 171 IRPWTKEDMQQFKS----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIK 225
            + + + ++Q+             + R   E L  +G+R S+     +  +  N    + 
Sbjct: 109 PQFFYEAEIQELFKTVEGKTPLDQRNRALLEVLYGTGIRVSECANLTLNQVDFNTGLLLI 168

Query: 226 TQKTGTIITVE------------LPDGFMKLLAMTPIGKETFFINNDKQKMNATQ----F 269
             K      V             L DG   L+    +     F+N   + + A       
Sbjct: 169 HGKGNKDRYVPFGRYAQRALQTYLKDGRQTLMNKRDVQHRFVFVNQYGRPITARGIEYIL 228

Query: 270 SIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
               K  +  A ++   H +R   AT   D GA    +    G  ++   + YT 
Sbjct: 229 DQLIKQTSLIANIH--PHMLRHSFATHMLDHGADLRTVQELLGHASLSTTQIYTH 281


>gi|238651031|ref|YP_002916888.1| site-specific tyrosine recombinase XerD [Rickettsia peacockii str.
           Rustic]
 gi|238625129|gb|ACR47835.1| site-specific tyrosine recombinase XerD [Rickettsia peacockii str.
           Rustic]
          Length = 306

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 48/276 (17%), Positives = 99/276 (35%), Gaps = 38/276 (13%)

Query: 85  GSLAVNSRISFESYF----DQIIR-KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
            +L+ NS +S++       + + + K  + +      +     + S      S  + +++
Sbjct: 15  RALSKNSILSYKRDLFDFQNYLAKHKLSELNITTENIRDWIEYLASDDLQARSINRKIST 74

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-----SEGSQPRL 194
           ++  +++ + + + A NP L+V+ PK + +     +   ++            EG +   
Sbjct: 75  IKSYYEFLISENHTAFNPVLNVDLPKYQNKLPEILSIAQIKSLLEHCSQDNSPEGIRLNA 134

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNN---------IFSIKTQKTGTIITVELPDGFMKLL 245
               L  SGLR S+     +  +  N         IFS+  +     + V      + + 
Sbjct: 135 MIHLLYASGLRVSELVSLKLADILTNKTSTGEVRKIFSVLGKGNKERVIVINEQAVISIA 194

Query: 246 AMTPIGKETFFINNDKQK--------------MNATQFSIWFKAKATKAGVNK---SAHG 288
               I     F+N  K +              M    F+I  K+ A  AG+N    S H 
Sbjct: 195 KYLAIRG--VFVNKAKPRNLIYLFPSSALAGYMTRQNFAILLKSAALYAGLNHEYISPHI 252

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +R   A+   + GA    +    G   +   + YT 
Sbjct: 253 LRHSFASHLLEGGADLRVIQELLGHADISTTQIYTH 288


>gi|221639249|ref|YP_002525511.1| Phage integrase family protein [Rhodobacter sphaeroides KD131]
 gi|221160030|gb|ACM01010.1| Phage integrase family protein [Rhodobacter sphaeroides KD131]
          Length = 311

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 55/287 (19%), Positives = 103/287 (35%), Gaps = 33/287 (11%)

Query: 74  LISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGV---ESRK 127
            IS + ++ A     A N+R+ +           G    D+   T   + + +   E++ 
Sbjct: 9   WISAFLEAQAAELDAARNTRLGYGRDLKDYAAWLGRRSEDFLTATRDTVEAYLTFCEAQG 68

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF-KSFW 186
            + ++  + L+S+R L+++A  + + A NP + +  P R     +    E++ +  ++  
Sbjct: 69  LSSATRARRLSSIRQLYRFAHEEGWRADNPAIRISGPGRSKRLPKTLEIEEVDRLLEAAR 128

Query: 187 SEGSQP------RLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPD 239
            +G +       R   E L  +G+R S+     V   + N    +   K G    V L  
Sbjct: 129 DKGRRAQDQIRNRCLLELLYATGMRVSEMVGLPVAAARGNPRMILVRGKGGKERMVPLSP 188

Query: 240 GFMKLLA----------------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
              + LA                  P  +  F  +     +    F +  K  A  AGV+
Sbjct: 189 PAREALADWLRARDAAEAQGQKAGRPASRFLFPGSGAAGHLTREYFYVLVKQIAVLAGVD 248

Query: 284 ---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
               + H +R   AT     GA    +    G   +   E YT   D
Sbjct: 249 PAKVTPHTLRHAFATHLLAGGADLRVIQTLLGHADLSTTEIYTHVLD 295


>gi|296454370|ref|YP_003661513.1| tyrosine recombinase XerD [Bifidobacterium longum subsp. longum
           JDM301]
 gi|296183801|gb|ADH00683.1| tyrosine recombinase XerD [Bifidobacterium longum subsp. longum
           JDM301]
          Length = 308

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 43/271 (15%), Positives = 91/271 (33%), Gaps = 31/271 (11%)

Query: 85  GSLAVNSRISFE----SYFDQIIRKSGDFD--YRKITTKHIRSGVESRKHTPSSAIQFLT 138
             LA  +  ++E     Y D +  +         K   +   + ++    +  S  + L 
Sbjct: 20  RGLATATVTAYESDIAKYIDWLETRGIHEPDAITKQDVEDYIAALDQAGESARSKARRLA 79

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG-------SQ 191
           S+    ++A+ Q  V  +   +V+ PK  +      T +++ +     + G        +
Sbjct: 80  SIHEFHRFALGQHAVTADVSAAVKAPKGASTLPDVLTVDEVTRLLDTAAVGGSTDPVVLR 139

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPD----------- 239
            +   EF+  +G R S++  A +  +  +   +    K      V L             
Sbjct: 140 DKALLEFMYATGCRVSEATGANLDDIDLDEHIARLMGKGSKQRLVPLGSYACRAITAYLN 199

Query: 240 ----GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFS 293
                  +  +     +   F+N   ++++        KA   +AG+ K    H +R   
Sbjct: 200 AGRGELERRSSAKIPERRALFLNKRGKRISRQSVWEIVKATGERAGITKPLHPHTLRHSF 259

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324
           AT     GA    +    G  +V   + YT 
Sbjct: 260 ATHLIQGGADVRTVQELLGHASVTTTQIYTH 290


>gi|28199084|ref|NP_779398.1| phage-related integrase [Xylella fastidiosa Temecula1]
 gi|182681811|ref|YP_001829971.1| integrase family protein [Xylella fastidiosa M23]
 gi|28057182|gb|AAO29047.1| phage-related integrase [Xylella fastidiosa Temecula1]
 gi|182631921|gb|ACB92697.1| integrase family protein [Xylella fastidiosa M23]
          Length = 339

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 63/333 (18%), Positives = 114/333 (34%), Gaps = 28/333 (8%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
           +P F  + + + G + YY+  G   R   P          Y  A+     + E+      
Sbjct: 11  IPRFRVRPQ-KSGVVYYYYDHGGKPRKETPLG------RDYGLAI-KRWAELEHAQITPA 62

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVE 124
              T + +   YR      + A N++     Y + +++   D    +  I   +IR  ++
Sbjct: 63  IAVTFRHVAERYRAEVI-PTKAYNTQRMHHVYLNYLLQFFDDPPAPFESIKPVNIRQYLD 121

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVA-INPCLSVERPKRKTEGIRPWTKEDMQQFK 183
            R     SA + +     L+ WA  +      NPC  + R K +   +      D   ++
Sbjct: 122 WRPFKV-SANREVALFSHLWNWARSKGITDLPNPCGGIRRNKERGRDVYI----DDTTYR 176

Query: 184 SFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
           + +    Q  R A +    +G R SD      +H+ N    I   KTG  + + +     
Sbjct: 177 AVYQAADQTLRDAMDLAYLTGQRVSDVVSMDERHIVNGALEICQAKTGVKLAIAITGELS 236

Query: 243 KLLAMTPIGKE-------TFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKF 292
            L+      K           ++    +++       F      AGV K       +R  
Sbjct: 237 VLIKRIFDRKRGMKLRSTRLIVDAKGLELSRIGLRYRFDKARAAAGVAKEVFQFRDLRAK 296

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKG 325
           +AT  AD      +  A  G  +V   E Y + 
Sbjct: 297 AATDKADLAGDMRQAQAQLGHASVTMTEHYVRK 329


>gi|237795760|ref|YP_002863312.1| phage integrase [Clostridium botulinum Ba4 str. 657]
 gi|229261691|gb|ACQ52724.1| phage integrase [Clostridium botulinum Ba4 str. 657]
          Length = 330

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 48/258 (18%), Positives = 94/258 (36%), Gaps = 13/258 (5%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQ 135
           Y  S     L++ +  +++     I           ITT  +R  +  R      +S   
Sbjct: 61  YLASKKLDGLSLKTLKNYQYNL-AIFADHLRKPLGTITTMDLRMFLAVRCKNMKATSVNG 119

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195
            ++ ++  F W   +EY+  NP   +++ K         T+E+++  +   S+  + +  
Sbjct: 120 QISILKSFFGWLHDEEYIPKNPAKKLKQTKEPKRLRHAMTEEEVELLRQ-ASKTDREKAL 178

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-----ITVELPDGFMKLLAMTPI 250
            EFL+ +G R S+        L  +  S+     G        + +      K L     
Sbjct: 179 VEFLISTGCRLSEVVGVNKDDLNWHEMSLNVIGKGNKERKVYFSTKAKILLKKYLLTRKD 238

Query: 251 GKETFFINNDK--QKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHE 306
             E  F+ + +   ++         K  A +AG+NKS   H  R   AT   ++G     
Sbjct: 239 DNEALFVTSKRPHGRLGGRSVQREIKKIANRAGLNKSVYPHLFRHSFATCKINSGMPLPV 298

Query: 307 LMATYGWKTVDQAETYTK 324
           L    G ++    + Y +
Sbjct: 299 LQHIMGHESPSTTQVYAQ 316


>gi|224368839|ref|YP_002603000.1| tyrosine recombinase XerD [Desulfobacterium autotrophicum HRM2]
 gi|223691555|gb|ACN14838.1| tyrosine recombinase XerD [Desulfobacterium autotrophicum HRM2]
          Length = 384

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 57/307 (18%), Positives = 111/307 (36%), Gaps = 21/307 (6%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDF 109
           L G   + E+     K   TL+ +  +Y     W  +   + ++ + +++  +     D 
Sbjct: 62  LQGDIVRGEFDIEKPKSAITLQEVWEKYLP---WVKVNKKTWLNDQYHYNHHLKPVFADN 118

Query: 110 DYRKITTKHIRSGVESRKH------TPSSA---IQFLTSMRVLFKWAVRQE-YVAINPCL 159
               I+   I   + + K        P +A      +  +  L+  A +   Y   NPC 
Sbjct: 119 PLDTISPFDIEKFMVTMKKGKSKRGKPYAAATIKHQVVLLTRLYSVAEQWGLYSGDNPCK 178

Query: 160 SVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA--FEFLLYSGLRCSDSCRAGVQHL 217
            V++PK   +     T +++        +      A    F L++GLR  +  +   +++
Sbjct: 179 KVKKPKLNNQVTEFLTDDELNSLLDVLEKWHNKMSAGFILFCLHTGLRRGELFKLTWENV 238

Query: 218 Q--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKA 275
                   +K  K     T+ L D  +++L   P   +T +I   K     T F   +  
Sbjct: 239 DLTRQSMVLKDPKGKLDQTLPLSDKAVEVLNSLPKDYKTQWIFYGKDGKQRTDFKGPWDR 298

Query: 276 KATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR-IRLG 332
               AG+ K    HG+R   A+    AG   + +      K     + Y   AD+ +R  
Sbjct: 299 IKVAAGLPKDFRLHGLRHHFASALVSAGVDLYTVQKLLCHKDAAMTQRYAHLADKTLRDA 358

Query: 333 IKNSRRI 339
           +  S  +
Sbjct: 359 VNLSDSL 365


>gi|224541324|ref|ZP_03681863.1| hypothetical protein CATMIT_00484 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525761|gb|EEF94866.1| hypothetical protein CATMIT_00484 [Catenibacterium mitsuokai DSM
           15897]
          Length = 310

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 44/267 (16%), Positives = 82/267 (30%), Gaps = 24/267 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKIT-----TKHIRSGVESRKHTPSSAIQFLTS 139
            + +V +  S+E      +   G              ++    +  +  + ++   +L+S
Sbjct: 15  KNYSVLTLQSYERELTDFLLFIGKESISLQEVDYYVIQNYLIYLNEKHLSHTTINHYLSS 74

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKSFWSEGSQPRLA 195
           +R  FK+  +Q  V  NP   V   K  +        ++M        +  S G + +  
Sbjct: 75  LRSFFKYLCQQNSVVSNPFSQVHSLKTGSRNPDFLYVDEMMGYLDSIDTHTSLGVRNKAL 134

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIG--- 251
            E +  SGLR S+     +  +  N   I+   K      V   D   K L         
Sbjct: 135 LELMYASGLRVSEVVSLRLSQIDFNRQMIRVLGKGSKEREVPFHDYAKKWLLQYINDDRI 194

Query: 252 ---------KETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADA 300
                     +  F+N   +K+                        H +R   AT   DA
Sbjct: 195 SIMNEYHEAHDYVFVNRRGKKLTNRGVENIIDRTMYLYDPLRKIHPHTIRHSFATHLLDA 254

Query: 301 GATAHELMATYGWKTVDQAETYTKGAD 327
           G     +    G  ++   + YT  + 
Sbjct: 255 GMDIRVVQELLGHSSLSTTQIYTHVSQ 281


>gi|191174259|ref|ZP_03035768.1| tyrosine recombinase XerC [Escherichia coli F11]
 gi|300979372|ref|ZP_07174530.1| tyrosine recombinase XerC [Escherichia coli MS 200-1]
 gi|190905442|gb|EDV65072.1| tyrosine recombinase XerC [Escherichia coli F11]
 gi|300308044|gb|EFJ62564.1| tyrosine recombinase XerC [Escherichia coli MS 200-1]
 gi|324014716|gb|EGB83935.1| tyrosine recombinase XerC [Escherichia coli MS 60-1]
          Length = 298

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 42/270 (15%), Positives = 91/270 (33%), Gaps = 20/270 (7%)

Query: 75  ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRK 127
           +  Y +       L+  + ++++   + II  + +   +          ++       + 
Sbjct: 8   VERYLRYLSVERQLSPITLLNYQRQLEAIIHFASENGLQSWQQCDVTMVRNFAVRSRRKG 67

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186
              +S    L+++R  F W V Q  +  NP   V  PK      +    +DM +      
Sbjct: 68  LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMSRLLDIDI 127

Query: 187 --SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT--------VE 236
                 + R   E +  +GLR S+     ++HL      +     G+           V 
Sbjct: 128 NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVA 187

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSA 294
             + ++ L  +     +  F++   ++++A      F     K G+N     H +R   A
Sbjct: 188 WIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFA 247

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324
           T   ++      +    G   +   + YT 
Sbjct: 248 THMLESSGDLRGVQELLGHANLSTTQIYTH 277


>gi|160940780|ref|ZP_02088122.1| hypothetical protein CLOBOL_05674 [Clostridium bolteae ATCC
           BAA-613]
 gi|158436300|gb|EDP14067.1| hypothetical protein CLOBOL_05674 [Clostridium bolteae ATCC
           BAA-613]
          Length = 382

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 42/258 (16%), Positives = 87/258 (33%), Gaps = 12/258 (4%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT----PSSA 133
           Y     + + A ++   +  +   ++   G     KI    I + +     T     S+ 
Sbjct: 111 YIAKMRFDNKAKSTIDQYSKFLGDMLCYLG-KPVDKIQDFDIMNFLNFYAETNGISDSTK 169

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
                     F +  ++ Y+  NP  +V+  K   +     T++++++ +    E  +  
Sbjct: 170 NHKRLIASSFFTFLHKRGYIIKNPMATVDTIKYTAQVREALTQKEVERMRVACGENLRDN 229

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGK 252
           +  E  L SG R S+     V+++     ++    K      V   D  +  L     G+
Sbjct: 230 VVLELFLASGCRVSEVAGMRVENIDMKQKTVIVLGKGKKERPVFFSDRLLVYLEKYLDGR 289

Query: 253 E----TFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHE 306
                   +    Q +         +  + KAG+ K    H +R   AT + + G     
Sbjct: 290 REGPVVISVRAPYQGIKKNAMENIVREISKKAGIEKRVFPHLLRHTFATHALNKGMPLES 349

Query: 307 LMATYGWKTVDQAETYTK 324
           L    G   ++    Y K
Sbjct: 350 LSDLMGHACIETTRIYAK 367


>gi|291457670|ref|ZP_06597060.1| tyrosine recombinase XerD [Bifidobacterium breve DSM 20213]
 gi|291380723|gb|EFE88241.1| tyrosine recombinase XerD [Bifidobacterium breve DSM 20213]
          Length = 309

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 41/286 (14%), Positives = 96/286 (33%), Gaps = 32/286 (11%)

Query: 71  LKWLISEYRKS-AHWGSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIR---SGV 123
              L  ++         LA  +  ++ES  ++    ++  G      I  + +    + +
Sbjct: 6   FGTLREQFLVHIGIERGLAKATVSAYESDLNKYVAWLQTHGITKPDDIAKQDVEDYIAAL 65

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
           ++   +  S  + L S+    ++A+ Q  V+ +   SV+ PK  +      + +++ +  
Sbjct: 66  DADGESARSKARRLASIHEFHRFALAQHAVSADVAASVKAPKGASVLPDVLSVDEVSRLL 125

Query: 184 SFWSEG-------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-V 235
              + G        + +   EF+  +G R S++    +  +      ++    G+    V
Sbjct: 126 DAAAVGGSTDPVVLRDKALLEFMYATGCRVSEAVGTNLDDIDLEEKVVRLMGKGSKQRLV 185

Query: 236 ELPD---------------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280
            L                    +        +   F+N   ++++        K    +A
Sbjct: 186 PLGSYARNSVVAYLNAGRGELERRSTAKVPERRALFLNKRGKRISRQSVWEIVKTAGGRA 245

Query: 281 GVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            + K    H +R   AT     GA    +    G  +V   + YT 
Sbjct: 246 DITKPLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTH 291


>gi|32474020|ref|NP_867014.1| integrase/recombinase [Rhodopirellula baltica SH 1]
 gi|32444557|emb|CAD74556.1| integrase/recombinase [Rhodopirellula baltica SH 1]
 gi|327543299|gb|EGF29732.1| integrase/recombinase [Rhodopirellula baltica WH47]
          Length = 300

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 93/278 (33%), Gaps = 28/278 (10%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITT--------KHIRSGVES 125
           I+ + +      + +  +  ++           G  +  +I          +  ++ ++ 
Sbjct: 5   ITRFLQYMATERNASDLTIKAYREDLFAFAEWIGQAEAGRIQLDSLTPQQLRQFQAALQQ 64

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
             +  ++  + L S+R  FK+A+R+   + NP   +  P+   +     T E++ +    
Sbjct: 65  AGYARTTIARKLASLRSFFKFAMREGMASSNPAKPLRNPRSSRKLPHVLTSEEVGRLLVA 124

Query: 186 WSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-ELPDG 240
                  G + R   E +  SGLR S+        L  +    + +  G    +  L   
Sbjct: 125 PPAISEAGLRDRAILETMYSSGLRVSELVGLRDGDLDFSQGITRVRGKGRKERISPLGSY 184

Query: 241 FMKLLAMTPIGKE------------TFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286
            +K +      +               F+N     +         +    KA ++   S 
Sbjct: 185 AIKAIQAYAGRRSRSPESEKLGRAAPVFVNRFGNILTTRSVGRMLEKYIAKAELDTRTSP 244

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           H +R   AT   D GA    +    G K++   + YT 
Sbjct: 245 HTLRHSFATHLLDRGADIRSVQELLGHKSLTTTQIYTH 282


>gi|206602847|gb|EDZ39328.1| Putative phage integrase family protein [Leptospirillum sp. Group
           II '5-way CG']
          Length = 314

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 47/290 (16%), Positives = 95/290 (32%), Gaps = 29/290 (10%)

Query: 71  LKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSG-------DFDYRKITTKHIRSG 122
           ++ L+  + +        + ++  ++      + R  G       DF    +T    R  
Sbjct: 5   VRDLLDAFEEDLRVASGRSPHTTQAYLLDLFALARFLGEHGLSLLDFSPEDVTRYFTRRE 64

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM--- 179
             + +       + L+++R   ++  R+   +I+P  ++  P+          +E++   
Sbjct: 65  DLAMRSR----SRVLSAIRSWSRFLKRRGLPSIDP-DTLPVPRLPRNLPGVLDEEEILRL 119

Query: 180 -QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
            +       EG + R        SGLR S+     +  L      I+    G    V   
Sbjct: 120 LEAPDPKTDEGIRDRAILATFYASGLRVSELAELTLDRLNLKEEQIRVTGKGQKERVAFL 179

Query: 239 DG---------FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287
           DG           ++   T    +T F+   +         +  K  A + G+++  S H
Sbjct: 180 DGVSCARLRLYLERVRPSTSTSDKTLFLTRRQTGFTRQGLWLLIKGYAKQCGIDRNVSPH 239

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
            +R   AT     G     +    G   +   E YT   D   L    +R
Sbjct: 240 TLRHSFATHLLSHGMDIRSIQILLGHSDIQTTEIYTH-VDIRMLAEDLAR 288


>gi|251772344|gb|EES52912.1| phage integrase family protein [Leptospirillum ferrodiazotrophum]
          Length = 336

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 49/283 (17%), Positives = 94/283 (33%), Gaps = 32/283 (11%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF----------DYRKITTKHIRSGV 123
           L   YR++      +  +  +       +                    +         +
Sbjct: 32  LCQAYRRNLVLSGRSPKTLKAAMDDLALLAALEARLLEGGAGFLWERLDRPRALRFVKRL 91

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
             R + PSS  + L+S+R  + +   Q ++A +P   +  P+         T+ + +   
Sbjct: 92  HDRGYAPSSIARILSSLRGFYGFLKTQGHIAEDPFAGISGPRANRPLPPLLTETEAETLV 151

Query: 184 SFW---------SEGS--QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-KTGT 231
           +            EG+  + R   E    +G+R S+ C    +     I S++ + K G 
Sbjct: 152 TAPVRNPVPKGGDEGTSLRDRAILELFYQTGVRLSELCGLLWEDAAPGIVSLRVRGKGGK 211

Query: 232 IITVELPDGFMKLLAMTP--------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
              V +    +K L                  F + D   ++  Q S   K  A +AG+ 
Sbjct: 212 ERRVPVVGEALKALCALREFLLKSGVSPTGPLFADGDGGALSPWQVSRIVKKYAREAGLQ 271

Query: 284 K--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           K  S H +R   AT   D  A   E+ +  G  ++   + Y  
Sbjct: 272 KTVSPHALRHSCATHLLDREADLREIQSLLGHASLGSTQRYLH 314


>gi|241663999|ref|YP_002982359.1| site-specific tyrosine recombinase XerD [Ralstonia pickettii 12D]
 gi|240866026|gb|ACS63687.1| tyrosine recombinase XerD [Ralstonia pickettii 12D]
          Length = 298

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 47/268 (17%), Positives = 87/268 (32%), Gaps = 23/268 (8%)

Query: 86  SLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESR--KHTPSSAIQFLTSMR 141
            LA N+  ++                   +     +     +R  +   SSA +  T  +
Sbjct: 21  GLARNTLDAYRRDLTLYAHWLAARGKSIAETEDGDLADYFAARHAESRASSANRRRTVFK 80

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFE 197
             F+WA+R+  V+ +P   +   K+     +  ++  ++   +        G + R   E
Sbjct: 81  RFFQWALREHVVSTDPSRLLPTAKQPPRFPKTLSETQVEALINAPDVDTPLGLRDRAMIE 140

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP------DGFMKLLAMTPIG 251
            +  SGLR S+        +  N   ++           +P      D   + L      
Sbjct: 141 LMYASGLRVSEIVALKTVEVGLNEGVVRVVGGKGGKDRLVPFGAEAGDWLRRYLRDGRTA 200

Query: 252 ------KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGAT 303
                  +  F+    + M    F    K  A  A ++   S H +R   AT   + GA 
Sbjct: 201 LLGERTADALFVTARGEGMTRQAFWYLIKRYALLADIHAPLSPHTLRHAFATHLLNHGAD 260

Query: 304 AHELMATYGWKTVDQAETYTKGADRIRL 331
              +    G   +   + YT  A R RL
Sbjct: 261 LRVVQMLLGHADISTTQIYTHVA-RERL 287


>gi|156935864|ref|YP_001439780.1| site-specific tyrosine recombinase XerC [Cronobacter sakazakii ATCC
           BAA-894]
 gi|156534118|gb|ABU78944.1| hypothetical protein ESA_03747 [Cronobacter sakazakii ATCC BAA-894]
          Length = 301

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 44/259 (16%), Positives = 86/259 (33%), Gaps = 19/259 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVESRKH-TPSSAIQFLT 138
             L+  + +++E     I+  +G+   +             +    R    PSS    L+
Sbjct: 21  RQLSPVTLLNYERQLTAIVGLAGEAGLKSWAQCDAAMVRSLAVRSRRAGLGPSSLALRLS 80

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLA 195
           ++R  F W V Q  +  NP   V  PK      +    +D+ +            + R  
Sbjct: 81  ALRSFFDWQVSQGELKANPAKGVSTPKTPRHLPKNIDVDDVNRLLDIDLNDPLAVRDRAM 140

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT--------IITVELPDGFMKLLAM 247
            E +  +GLR S+       HL      +     G+           V   + ++ L  +
Sbjct: 141 LEIMYGAGLRLSELVNIDCNHLDLTSGEVWVMGKGSKERRLPIGRSAVAWIEHWLNLREL 200

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAH 305
                +  F++   ++++A      F     K G+N     H +R   AT   ++     
Sbjct: 201 FGPDDDALFLSKQGKRISARNVQKRFAEWGIKQGLNSHVHPHKLRHSFATHMLESSGDLR 260

Query: 306 ELMATYGWKTVDQAETYTK 324
            +    G   +   + YT 
Sbjct: 261 AVQELLGHANLSTTQIYTH 279


>gi|199599532|ref|ZP_03212920.1| Integrase [Lactobacillus rhamnosus HN001]
 gi|199589573|gb|EDY97691.1| Integrase [Lactobacillus rhamnosus HN001]
 gi|259649723|dbj|BAI41885.1| integrase [Lactobacillus rhamnosus GG]
          Length = 298

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 81/235 (34%), Gaps = 23/235 (9%)

Query: 111 YRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170
              +  +   + +  +    +S  + ++S+R  +++ VR + V  NP   VE  K+    
Sbjct: 48  VDDLDVQTYLTDLNKQALARTSIARKISSLRSFYRYLVRIDVVKRNPFELVELKKQHHHL 107

Query: 171 IRPWTKEDMQQFKS----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIK 225
            + + + ++Q+             + R   E L  +G+R S+     +  +  N    + 
Sbjct: 108 PQFFYEAEIQELFKTVEGKTPLDQRNRALLEVLYGTGIRVSECANLTLNQVDFNTGLLLI 167

Query: 226 TQKTGTIITVE------------LPDGFMKLLAMTPIGKETFFINNDKQKMNATQ----F 269
             K      V             L DG   L+    +     F+N   + + A       
Sbjct: 168 HGKGNKDRYVPFGRYAQRALQTYLKDGRQTLMNKRDVQHRFVFVNQYGRPITARGIEYIL 227

Query: 270 SIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
               K  +  A ++   H +R   AT   D GA    +    G  ++   + YT 
Sbjct: 228 DQLIKQTSLIANIH--PHMLRHSFATHMLDHGADLRTVQELLGHASLSTTQIYTH 280


>gi|169826676|ref|YP_001696834.1| hypothetical protein Bsph_1094 [Lysinibacillus sphaericus C3-41]
 gi|168991164|gb|ACA38704.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41]
          Length = 280

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 43/266 (16%), Positives = 95/266 (35%), Gaps = 12/266 (4%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE---SRKHTPS 131
           I ++++   +  LA  +   ++    Q+   + +  + KIT K IR  +     + +  +
Sbjct: 9   IEKFKEEYMYR-LAPRTIRGYQLSVKQLQDYT-EKPFNKITKKDIRHWMMVLNEKGYKQN 66

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           S    L  ++  +++   +  + INP   +  PK      R  +K+ +        E   
Sbjct: 67  SIKNKLIGLKTFYQYCFDEGLMIINPAKDIPFPKVAETLPRYLSKKQLTCLLEHVCERLY 126

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITV----ELPDGFMKLL 245
            R   E L  +G+R S+  +   + +        I   K      V    +        L
Sbjct: 127 ERTIIEVLYATGVRISELVKIKKEDINWSERSIQILEGKGNRSRIVLFNLDCAQHLETYL 186

Query: 246 AMTPIGKETFFINNDKQKMNATQ-FSIWFKAKATKAGVNKSAHGVRKFSATISADAGATA 304
                     F++  + +M  ++  +  F+  + + G   + H +R   A   A+ G   
Sbjct: 187 NSRTDKLPYVFVDKKETRMIRSREINTLFQFYSKQLGFRVTPHMLRHTFAAHLAERGMPL 246

Query: 305 HELMATYGWKTVDQAETYTKGADRIR 330
             +    G +T    + Y +  +  R
Sbjct: 247 ECIQQLLGHETTHSTQLYARLYNHAR 272


>gi|306815150|ref|ZP_07449303.1| site-specific tyrosine recombinase XerC [Escherichia coli NC101]
 gi|305851519|gb|EFM51973.1| site-specific tyrosine recombinase XerC [Escherichia coli NC101]
          Length = 298

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 42/270 (15%), Positives = 91/270 (33%), Gaps = 20/270 (7%)

Query: 75  ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRK 127
           +  Y +       L+  + ++++   + II  + +   +          ++       + 
Sbjct: 8   VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKG 67

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186
              +S    L+++R  F W V Q  +  NP   V  PK      +    +DM +      
Sbjct: 68  LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMSRLLDIDI 127

Query: 187 --SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT--------VE 236
                 + R   E +  +GLR S+     ++HL      +     G+           V 
Sbjct: 128 NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVA 187

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSA 294
             + ++ L  +     +  F++   ++++A      F     K G+N     H +R   A
Sbjct: 188 WIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFA 247

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324
           T   ++      +    G   +   + YT 
Sbjct: 248 THMLESSGDLRGVQELLGHANLSTTQIYTH 277


>gi|73662825|ref|YP_301606.1| putative integrase recombinase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|82582337|sp|Q49X37|XERC_STAS1 RecName: Full=Tyrosine recombinase xerC
 gi|72495340|dbj|BAE18661.1| putative integrase recombinase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 296

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 39/265 (14%), Positives = 90/265 (33%), Gaps = 20/265 (7%)

Query: 85  GSLAVNSRISFESYFDQ--IIRKSGDFDYRKITTKHIRSGVE---SRKHTPSSAIQFLTS 139
              + ++  S+    +Q  +       D      K  R+ +    S+    +S  + +++
Sbjct: 16  KQFSEHTLKSYHDDLEQFNVFLAQEHLDLNAFEYKDARNYLSYLYSKNLKRTSVSRKIST 75

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KSFWSEGSQPRLA 195
           +R  +++ + Q+   +NP + +  PK++      + +E+M+      ++   +G + R+ 
Sbjct: 76  LRSFYEYWMTQDEAVVNPFIQLVHPKKEHYLPHFFYEEEMEALFDTVENDAKKGLRDRVI 135

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE--------LPDGFMKLLA 246
            E L  +G+R S+      Q +      +K   K G    +         +         
Sbjct: 136 LELLYSTGIRVSELVHIKEQDIDMTSPGVKVLGKGGKERFIPFGEFCKQSMERYLASFKP 195

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATK-AGV-NKSAHGVRKFSATISADAGATA 304
                 +   +N     +              + AGV     H +R   AT   + GA  
Sbjct: 196 KLNSNHDYLLVNMKGDPITERGVRYVLNDVVKRTAGVTEIHPHKLRHTFATHMLNQGADL 255

Query: 305 HELMATYGWKTVDQAETYTKGADRI 329
             + +  G   +     YT   +  
Sbjct: 256 RTVQSLLGHVNLSTTGRYTHVTNEQ 280


>gi|269792953|ref|YP_003317857.1| integrase family protein [Thermanaerovibrio acidaminovorans DSM
           6589]
 gi|269100588|gb|ACZ19575.1| integrase family protein [Thermanaerovibrio acidaminovorans DSM
           6589]
          Length = 292

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 48/277 (17%), Positives = 96/277 (34%), Gaps = 16/277 (5%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF---DYRKITTKHIRSGVESR---K 127
           +I  + +       + ++ I++     Q             + IT  H+R  + S     
Sbjct: 1   MIDSFLEYLKSLGRSEHTVINYGVDLGQFAEYLEQAEVHRVQDITRDHVRGFLRSLVGYG 60

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              +SA++ ++S+R    +      +  +P   V+ P+      R  +  D+ +      
Sbjct: 61  FAKASALRKMSSIRGFMGYLRDIGVIERDPSEGVKGPRSSPGLPRAISYPDVCRLLEEGP 120

Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-ITVE----LPD 239
            G    + RL  E L  SGLR S+ C      +      I+    G+    V     + D
Sbjct: 121 SGREAFRDRLVMELLYGSGLRVSELCDLDWDDVDVEERWIRVMGKGSKGRMVPFGSIVQD 180

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISA 298
              +   M       F      +++            A + G+   S H +R   AT   
Sbjct: 181 MLRRWGEMVGRAGPLFPGKRGAERLTQRTVHRIVSGCARRVGLFGVSPHTLRHSFATHLL 240

Query: 299 DAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIK 334
           + GA+   +    G +++   + Y    A+R+R   +
Sbjct: 241 EGGASLRVVQELMGHESLVTTQRYLDVTAERMRFSYQ 277


>gi|19553231|ref|NP_601233.1| site-specific tyrosine recombinase XerC [Corynebacterium glutamicum
           ATCC 13032]
 gi|62390867|ref|YP_226269.1| site-specific tyrosine recombinase XerC [Corynebacterium glutamicum
           ATCC 13032]
 gi|41326206|emb|CAF20368.1| SITE-SPECIFIC RECOMBINASE [Corynebacterium glutamicum ATCC 13032]
          Length = 315

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 47/300 (15%), Positives = 101/300 (33%), Gaps = 17/300 (5%)

Query: 50  ALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGD 108
           A +G         S    P+ L  LI ++ +        +  +   + S    +     D
Sbjct: 9   ARSGRNA-PPSGISGADAPSKLHTLIDDFCEHLDLVVGRSAATIRGYRSDLYAMADTIED 67

Query: 109 FD-YRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167
            D +   T +           + ++  +   S++    WA +  ++  +    +  PK  
Sbjct: 68  IDNFSLPTLRQWLGIAVDEGKSRATLARRTASVKAFSSWAQKNGHLKADEAARLISPKIT 127

Query: 168 TEGIRPWTKEDMQQFKSFWS-----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222
            +  +   ++    F    +     E  +     E L  +G+R ++ C   +  +  +  
Sbjct: 128 RDLPKILGEQQAGDFVENAASTNEEEFLRDSAILELLYATGMRVAELCGIDLSDIDYDRK 187

Query: 223 SIKT-QKTGTIITVELPDGFMKLLAMTPIGKE-------TFFINNDKQKMNATQFSIWFK 274
            ++   K      V   +   K L      ++         F+    Q++NA Q      
Sbjct: 188 MVRVLGKGNKERVVPFGESAHKALRNWLDVRDEMTEDPKALFVGVRGQRINARQVRRIVD 247

Query: 275 AKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
             A   GV+  S H +R  +AT   D GA   ++    G  ++   + YT  +++  L  
Sbjct: 248 RAAKVTGVDHLSPHSLRHTAATHLLDGGADLRQVQELLGHSSMQTTQIYTHVSNKRLLEA 307


>gi|298531237|ref|ZP_07018637.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298508847|gb|EFI32753.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
          Length = 384

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 54/254 (21%), Positives = 100/254 (39%), Gaps = 17/254 (6%)

Query: 90  NSRISFESYFDQIIR----KSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRV 142
             + S++S    +      K G     +IT   I +  + R      P+SA + +  +R 
Sbjct: 116 GYKRSWKSDLSFLRTHLVPKFGKLHLDQITRDDIMAMHQERLKNGAAPASANRLVILLRY 175

Query: 143 LFKWAVRQEY--VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL--AFEF 198
           +F  A++ E   V +NP   V   +   +  R  T+E++Q+      E   P L      
Sbjct: 176 MFNLAIQWETPGVTVNPTKGVPLAEENNQRERYLTEEEVQRLCKAVKESENPLLEPIISM 235

Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKT--QKTGTIITVELPDGFMKLLAMTPI--GKET 254
           L+ +G R S+   A  + L       +    K+G   TV L +  +++L   P   G E 
Sbjct: 236 LILTGARKSEVLNAKWEDLDLERKRWRIPYTKSGKPRTVPLSESALEVLRSVPKVEGSEY 295

Query: 255 FFIN-NDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGW 313
            F +    +  N+  ++ W  A+      +   H +R   A+   +AG   +E+    G 
Sbjct: 296 IFPSPVTGKPFNSI-YNSWNTARIKSGLEDVKIHTLRHSFASFLVNAGRNLYEVGKLLGH 354

Query: 314 KTVDQAETYTKGAD 327
             +     Y+  +D
Sbjct: 355 TQMRTTMRYSHLSD 368


>gi|161619421|ref|YP_001593308.1| phage integrase [Brucella canis ATCC 23365]
 gi|254704727|ref|ZP_05166555.1| phage integrase [Brucella suis bv. 3 str. 686]
 gi|260566026|ref|ZP_05836496.1| phage integrase [Brucella suis bv. 4 str. 40]
 gi|261755423|ref|ZP_05999132.1| integrase/recombinase [Brucella suis bv. 3 str. 686]
 gi|161336232|gb|ABX62537.1| phage integrase [Brucella canis ATCC 23365]
 gi|260155544|gb|EEW90624.1| phage integrase [Brucella suis bv. 4 str. 40]
 gi|261745176|gb|EEY33102.1| integrase/recombinase [Brucella suis bv. 3 str. 686]
          Length = 164

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 60/155 (38%), Gaps = 14/155 (9%)

Query: 205 RCSDSCRAGVQH-------LQN-----NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252
           R  D               L       + F ++  KTG  + + +     ++L  TP   
Sbjct: 9   RRGDIAALRWDQRCSKTVFLDGEAKSVDGFELRQGKTGKRLLLPITPILSEVLEATPRQG 68

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMAT 310
           ET  +    +  +    +         A + K  + HG+RK    I A+ GA+  ++M T
Sbjct: 69  ETVLVTAYGEPFSPKSLTGRMADWTPSAKLPKGFTLHGLRKTLGKILAEGGASTRQIMDT 128

Query: 311 YGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345
            G   + +AE YT+ A++ RL      R+  +  +
Sbjct: 129 LGHDDIARAELYTREAEQARLATDGMSRVVRLKRN 163


>gi|297617131|ref|YP_003702290.1| tyrosine recombinase XerC [Syntrophothermus lipocalidus DSM 12680]
 gi|297144968|gb|ADI01725.1| tyrosine recombinase XerC [Syntrophothermus lipocalidus DSM 12680]
          Length = 306

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 38/294 (12%), Positives = 92/294 (31%), Gaps = 39/294 (13%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFD--------YRKITTKHIRSGVESRKH---TPSSA 133
              +  +   + S  ++ +    D          +  +  + +R  +   +      S+ 
Sbjct: 20  KGASPLTLAGYRSDLERFVAHFADKRGIGPEEIGFEVLDPRTVREYLAHLQECGLKRSTM 79

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EG 189
            + + ++R   K+    + + +NP  +V  P+R+    R    ++++   +        G
Sbjct: 80  ARKVAALRSFGKYLCSSQIIEVNPVATVSTPRREKRLPRFLYSQEVEALLAAPDGGDVLG 139

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-------------E 236
            + +   E L  +G+R  +     +         I+    G+   +              
Sbjct: 140 LRDQAILELLYATGIRVGELVGLDLPDFDAEERFIRVMGKGSKERIVPVGARAVEAMNRY 199

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294
           L      L A     +   F+N    +++A            +  +    S H +R   A
Sbjct: 200 LNSSRRVLAARKQGTENAIFLNRHGTRLSARGVRNIVNRYVEEIALRLKISPHTLRHTFA 259

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
           T   + GA    +    G   +   + YT            + R+ ++ D   P
Sbjct: 260 THLLNGGADLRSVQELLGHARLSTTQVYTHV---------TAERLKNIYDDKFP 304


>gi|126175914|ref|YP_001052063.1| phage integrase family protein [Shewanella baltica OS155]
 gi|125999119|gb|ABN63194.1| phage integrase family protein [Shewanella baltica OS155]
          Length = 451

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 51/289 (17%), Positives = 110/289 (38%), Gaps = 16/289 (5%)

Query: 48  MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKS 106
           + A      +     SPR         + +  K   +     +++ S     ++ ++   
Sbjct: 77  LQAWREENTQPSMSASPR-----FDVFVEQTWKPMIFEHWKPSTKRSVLPALNRRLLAHF 131

Query: 107 GDFDYRKITTKHIRSGVESRKHTP-SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165
           G +    I  + +++  +    T   +A + L +++ +FK A+RQ +   NPC+ + + K
Sbjct: 132 GRYPLHMINHRMVQAWFDEISKTRKGAANRNLDTLQSVFKLALRQGHCLTNPCIGIRQNK 191

Query: 166 RKTEGIRPWTKEDMQQFKSFWSE-----GSQPRLA--FEFLLYSGLRCSDSCRAGVQHLQ 218
           R+    R  +  +MQ+      E     GS  + A     LL +G R S+      ++++
Sbjct: 192 RRV-LNRFLSVAEMQRLSVALDECEEVGGSIAQCADILRLLLLTGCRLSEITFLKGEYVR 250

Query: 219 NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKAT 278
            N   +   KTG  + + +    + +L+       T      +    +   S+W + +  
Sbjct: 251 GNELHLPDSKTGAKV-LYIGQAAVDILSRYHCKANTELFPMKQGASTSLVQSLWLRLRKQ 309

Query: 279 KAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
               +   H +R   A+ +   G +   + +  G K V     YT   D
Sbjct: 310 IGIEDVRLHDLRHTFASYAVMDGCSIPMVASLLGHKKVTMTLRYTHVGD 358


>gi|170757708|ref|YP_001782133.1| phage integrase [Clostridium botulinum B1 str. Okra]
 gi|169122920|gb|ACA46756.1| phage integrase [Clostridium botulinum B1 str. Okra]
          Length = 331

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 47/258 (18%), Positives = 92/258 (35%), Gaps = 13/258 (5%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQ 135
           Y  S     L++ +  +++     I           I T  +R  + +R     PSS   
Sbjct: 62  YLASKKLDGLSLETLKNYQYNL-AIFADYLRKPLATINTMDLRMFLGARCKNMKPSSMNG 120

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195
            ++ ++  F W   +EY+  NP   +++ K      +P T+E+ +  +    E  + +  
Sbjct: 121 QISILKSFFGWLEAEEYIPKNPAAKLKQTKEPKRVRKPLTEEEAELLRQAC-ETDRQKAL 179

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELP----DGFMKLLAMTPI 250
            EFL+ +G R  +  +    ++  +  S     K      V           K L     
Sbjct: 180 TEFLISTGCRLDEVFKVNKDNINWHEMSLFVVGKGDKERKVYFNTKAKILLKKYLFSRED 239

Query: 251 GKETFFINNDK--QKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHE 306
                F+ + +   ++        FK  A  AG+ KS   H  R   AT   ++G     
Sbjct: 240 DDPALFVTSKRPYHRLGKRSIQREFKKIANMAGIEKSIHPHLFRHSFATYKINSGMPMPI 299

Query: 307 LMATYGWKTVDQAETYTK 324
           +    G ++    + Y +
Sbjct: 300 IQHLMGHESPATTQIYAQ 317


>gi|218236017|ref|YP_002367298.1| DNA integration/recombination/invertion protein [Bacillus cereus
           B4264]
 gi|218163974|gb|ACK63966.1| site-specific recombinase, phage integrase family [Bacillus cereus
           B4264]
          Length = 369

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 46/312 (14%), Positives = 108/312 (34%), Gaps = 38/312 (12%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE 124
               TLK  ++ + +     S+  ++   + ++ +  +I   G     K+   HI+   +
Sbjct: 60  PSKVTLKDYLNHWLEIKS-MSIEKSTFAGYRAFINQHVIPSIGMVALHKLNVMHIQKCYK 118

Query: 125 SRKHTPSSAIQFLTSMRVL---FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
           +      +    L   R+L      AV+Q  ++ NP    E PK++   I+ WT+E++++
Sbjct: 119 NAIDKGIANNSILLMHRILKSALNLAVKQNIISRNPADFAEIPKKEKTPIQTWTEEEVKK 178

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--------------NNIFSIKTQ 227
           F +  S+ S+  + +   + +G+R  +      Q +               +N      +
Sbjct: 179 FLA-HSQESRYHIGYLLAITTGMRLGEVLGLRWQDIDFEKHTVTINQTSGHDNKIKKTAK 237

Query: 228 KTGTIITVELPDGFMKLLAMTPI--------------GKETFFINNDKQKMNATQFSIWF 273
              +  T+ +P+  +  L    +               ++    N   + +    F   F
Sbjct: 238 TNSSKRTIPVPNETIAALKKHKVLINKEKLRFGSAYLDQDLINCNEFGRIIKRAHFRKSF 297

Query: 274 KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRL 331
                K G+ +   H +R   AT+    G     +    G   +      Y+       +
Sbjct: 298 IRMTHKVGIKEIKFHDLRHTHATLLLKQGVNPKIISERLGHTDISMTLSVYSHVL--PNM 355

Query: 332 GIKNSRRISSVV 343
             +  +     +
Sbjct: 356 QEEAVKNFGKSI 367


>gi|34222908|sp|Q8NNZ9|XERC_CORGL RecName: Full=Tyrosine recombinase xerC
 gi|21324798|dbj|BAB99421.1| Integrase [Corynebacterium glutamicum ATCC 13032]
          Length = 308

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 47/300 (15%), Positives = 101/300 (33%), Gaps = 17/300 (5%)

Query: 50  ALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGD 108
           A +G         S    P+ L  LI ++ +        +  +   + S    +     D
Sbjct: 2   ARSGRNA-PPSGISGADAPSKLHTLIDDFCEHLDLVVGRSAATIRGYRSDLYAMADTIED 60

Query: 109 FD-YRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167
            D +   T +           + ++  +   S++    WA +  ++  +    +  PK  
Sbjct: 61  IDNFSLPTLRQWLGIAVDEGKSRATLARRTASVKAFSSWAQKNGHLKADEAARLISPKIT 120

Query: 168 TEGIRPWTKEDMQQFKSFWS-----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222
            +  +   ++    F    +     E  +     E L  +G+R ++ C   +  +  +  
Sbjct: 121 RDLPKILGEQQAGDFVENAASTNEEEFLRDSAILELLYATGMRVAELCGIDLSDIDYDRK 180

Query: 223 SIKT-QKTGTIITVELPDGFMKLLAMTPIGKE-------TFFINNDKQKMNATQFSIWFK 274
            ++   K      V   +   K L      ++         F+    Q++NA Q      
Sbjct: 181 MVRVLGKGNKERVVPFGESAHKALRNWLDVRDEMTEDPKALFVGVRGQRINARQVRRIVD 240

Query: 275 AKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
             A   GV+  S H +R  +AT   D GA   ++    G  ++   + YT  +++  L  
Sbjct: 241 RAAKVTGVDHLSPHSLRHTAATHLLDGGADLRQVQELLGHSSMQTTQIYTHVSNKRLLEA 300


>gi|118725028|ref|NP_720381.2| phage integrase family site specific recombinase [Shewanella
           oneidensis MR-1]
 gi|112949651|gb|AAN52981.2| site-specific recombinase, phage integrase family [Shewanella
           oneidensis MR-1]
          Length = 456

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 55/307 (17%), Positives = 116/307 (37%), Gaps = 13/307 (4%)

Query: 32  RIRLPYPHESTFIPAYMSALTGSTP--KREYINSPRKKPTTLKWLISEYRKSAHWGSLAV 89
           R R+  P  +  + A     TG     + E+              + +  K   +     
Sbjct: 54  RTRILAPVSALTVKAAREKATGQLQAWREEHTQPSMSASPRFDVFVEQTWKPMIFEHWKP 113

Query: 90  NSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKHTP-SSAIQFLTSMRVLFKWA 147
           +++ S     ++ ++   G +    I  K +++  +    T   +A + L +++ +FK A
Sbjct: 114 STKRSVLPALNRRLLAHFGRYPLHMINHKMVQAWFDEISKTRKGAANRNLDTLQSVFKLA 173

Query: 148 VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-----GSQPRLA--FEFLL 200
           +RQ +   NPC+ + + KR+    R  +  +MQ+      E     GS  + A     LL
Sbjct: 174 LRQGHCLTNPCIGIRQNKRRV-LNRFLSVAEMQRLSVALDECEAVGGSIAQCADVLRLLL 232

Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINND 260
            +G R S+      ++++ N   +   KTG  + + +    + +L+       T      
Sbjct: 233 LTGCRLSEITFLKGEYVRGNELHLPDSKTGAKV-LYIGQAAVDILSRYHCKANTELFPMK 291

Query: 261 KQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
           +    +   S+W + +      +   H +R   A+ +   G +   + +  G K V    
Sbjct: 292 QGASTSLVQSLWLRLRKQIGVEDVRLHDLRHTFASYAVMDGCSIPMVASLLGHKKVTMTL 351

Query: 321 TYTKGAD 327
            YT   D
Sbjct: 352 RYTHVGD 358


>gi|317051491|ref|YP_004112607.1| integrase family protein [Desulfurispirillum indicum S5]
 gi|316946575|gb|ADU66051.1| integrase family protein [Desulfurispirillum indicum S5]
          Length = 330

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 42/271 (15%), Positives = 98/271 (36%), Gaps = 24/271 (8%)

Query: 78  YRKSAHWG-SLAVNSRISF----ESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132
           Y++   +   L+  +   +      + + + ++    +        +    ++   + S+
Sbjct: 46  YQRYLKYECGLSQQTIDRYLFEMRRFLEFLQQEELTVETAGPRELRMYLTHKAMGKSKST 105

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK--RKTEGIRPWTKEDMQQFKSFWS--- 187
               L  +R +F W   + ++  NP   ++ PK   K E       ++ ++ +++ +   
Sbjct: 106 YANVLCYVRAIFNWLQYEGFLEENPARDLKSPKGAYKNEMPVFLKDDEQKRLRAYLNGLE 165

Query: 188 ---EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMK 243
                 +       +LY+G+R S+ C+   ++      + + T+K      + + D  M+
Sbjct: 166 RNFHNDRDTAVMLCVLYTGMRASEICQLTRRNFHRQGKAFQITRKGQKEQILPIADALME 225

Query: 244 LL------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN----KSAHGVRKFS 293
           +L       M  I  + FF   + + +               AG++    + AH +R   
Sbjct: 226 ILQFYWYEHMDSIDSDFFFCRTNGKPLTPYIIWQRTSLHIKAAGIDLPRKRGAHLLRHTF 285

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324
           AT     G    E+    G   V   E YT 
Sbjct: 286 ATNLVRKGVNLIEIQRLLGHSHVAVTEIYTH 316


>gi|220917980|ref|YP_002493284.1| tyrosine recombinase XerC [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219955834|gb|ACL66218.1| tyrosine recombinase XerC [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 343

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 49/285 (17%), Positives = 94/285 (32%), Gaps = 30/285 (10%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHTPSSA 133
             Y  S      + ++R +++    Q      D        +   +R  +  +     + 
Sbjct: 20  DAYLASE--KRASPHTRKAYQVDLAQYAAYLADQGQPLVPSSPALVRGFLARQAGAAGAV 77

Query: 134 I--QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF------KSF 185
              + L+++R L+++ VR+     NP  +V  PKR         +E++          + 
Sbjct: 78  SLGRKLSALRSLYRFLVREGLAPGNPARAVASPKRPKRLPEVLPEEEVAALVETPDAATE 137

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVEL------- 237
                + R   E L  SGLR S+     ++ L      ++   K      V         
Sbjct: 138 APLALRDRAFLELLYGSGLRVSELTGLDLEDLDLAGGLVRVLGKRNKERIVPFGAPAADA 197

Query: 238 ----PDGFMKLLAMTP---IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288
                DG   +LA  P      +  F+N    ++ +   +         +G+ +    H 
Sbjct: 198 LRRYLDGARPVLAAGPDHARAGDAVFLNFRGGRLTSRSVARRLDGWVLASGLPRHVHPHV 257

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           +R   AT     GA    +    G  ++   + YT   D  RL  
Sbjct: 258 LRHCFATHLLGNGADLRGIQELLGHASLSTTQRYTH-LDWKRLAA 301


>gi|84490143|ref|YP_448375.1| site-specific recombinase/integrase [Methanosphaera stadtmanae DSM
           3091]
 gi|84373462|gb|ABC57732.1| predicted site-specific recombinase/integrase [Methanosphaera
           stadtmanae DSM 3091]
          Length = 316

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 42/280 (15%), Positives = 93/280 (33%), Gaps = 33/280 (11%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS-GDFDYRK---ITTKHIRSGVESR 126
            +  + +Y         + N+  +++S  D   +    D   +    +     R     +
Sbjct: 11  FEDQVEDYILEMDIQGYSSNTLKTYKSILDNFYKFILSDRKIKDEKGMLRAFKRYLQYLK 70

Query: 127 KHTPSSAIQFL---TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM---- 179
           +    S          ++  F++A    Y        ++ PKR     +   ++++    
Sbjct: 71  REKEVSTNYIYLVTVVLKKFFEFAEIHIY------EEIKAPKRTKSLPKSLNEQEVYDLI 124

Query: 180 -QQFKSFWSEGSQP--------RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
             +   +  E + P        +L    L  +GLR S+  +  V  +  N  +I+ +  G
Sbjct: 125 HAKDNEYDPEKTNPQNITRLRNKLILTLLYSTGLRVSELTKLKVTTIDENERTIRVRGKG 184

Query: 231 TIITVEL-----PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284
               + +      D   + L    +  E  F+N     +++    +  K  A  AG+ + 
Sbjct: 185 DKDRIVIFDEDTLDLIHEYLDKRGVENEYLFVNQRNTSLSSRYIQLMIKEYAKDAGITRR 244

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
            + H +R   AT     G     +    G   +   + YT
Sbjct: 245 VTPHILRHSFATHLLKNGVDIRAIQQLLGHSNLSTTQIYT 284


>gi|257791164|ref|YP_003181770.1| integrase family protein [Eggerthella lenta DSM 2243]
 gi|317488103|ref|ZP_07946680.1| phage integrase [Eggerthella sp. 1_3_56FAA]
 gi|325832921|ref|ZP_08165594.1| phage integrase, N-terminal SAM domain protein [Eggerthella sp.
           HGA1]
 gi|257475061|gb|ACV55381.1| integrase family protein [Eggerthella lenta DSM 2243]
 gi|316912811|gb|EFV34343.1| phage integrase [Eggerthella sp. 1_3_56FAA]
 gi|325485786|gb|EGC88250.1| phage integrase, N-terminal SAM domain protein [Eggerthella sp.
           HGA1]
          Length = 323

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 42/283 (14%), Positives = 92/283 (32%), Gaps = 32/283 (11%)

Query: 74  LISEYRKSAH-WGSLAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVESRK 127
           LI  +  +     + +V++  ++              +           +     ++  +
Sbjct: 24  LIDAFCHAMRVERNASVHTLRAYRIDLMDFARWACRERIDILAATHRQLRRYLGELDRAQ 83

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186
           ++ ++  + L+++R  F+W         +P   ++ PK+           DM +  + + 
Sbjct: 84  YSRTTVNRRLSALRSFFRWLNVTGIADEDPASILQGPKQPKSLPHVIRASDMVKLLTVYG 143

Query: 187 ------------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTII 233
                       S  ++     EFL   G R S++      ++      +K   K     
Sbjct: 144 KRDAAGREREQSSVDARNLALLEFLYACGARVSEASGLLAANVDFGSGQVKVFGKGSKER 203

Query: 234 TVELPDGFMKLLAMTPI----------GKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
            V L D  +  +                 + FF++    +M        FK    +AG++
Sbjct: 204 IVPLHDMAVSSMRAYATWARPLILRDRTCDYFFVSTRGNRMGTDAIRKMFKDALRQAGLD 263

Query: 284 --KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              S H +R   AT   D GA    +    G  ++   + YT 
Sbjct: 264 ESLSPHDMRHTFATDLLDGGADLRSVQEMLGHASLSTTQIYTH 306


>gi|262202720|ref|YP_003273928.1| tyrosine recombinase XerD [Gordonia bronchialis DSM 43247]
 gi|262086067|gb|ACY22035.1| tyrosine recombinase XerD [Gordonia bronchialis DSM 43247]
          Length = 313

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 48/260 (18%), Positives = 88/260 (33%), Gaps = 26/260 (10%)

Query: 90  NSRISFESYFDQIIRK--SGDFDYRKITTKHI----RSGVESRKHTP---SSAIQFLTSM 140
           + R   E Y + +I +  SG  +  +   +      R G E+    P   SS  + L + 
Sbjct: 35  SYRRDLERYQNYLIARGISGLAEVTESDIREFLVALRRGDEATGSRPLADSSIARTLVAT 94

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-----WSEGSQPRLA 195
           R    +AV +  V+ +   +V  P+      +    +++                + R  
Sbjct: 95  RRFHGFAVDEGVVSTDVAHAVRPPRPARRLPKSLPVDEVLAILEASSTGDHPRALRDRAL 154

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAM------- 247
            E L   G R S++    V  L     +++   K G    V +       +         
Sbjct: 155 LELLYSCGARISEATSLDVDDLDTAARAVRLRGKGGKERIVPVGGPAADAIDAYLVRGRP 214

Query: 248 --TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGAT 303
                     F+N    +++         + A +AG++K  S H +R   AT   D GA 
Sbjct: 215 VLATRSAPALFLNARGGRLSRQSAWQVLVSAAERAGLDKAVSPHTLRHSFATHLLDGGAD 274

Query: 304 AHELMATYGWKTVDQAETYT 323
              +    G  +V   + YT
Sbjct: 275 VRVVQELLGHASVTTTQVYT 294


>gi|29348151|ref|NP_811654.1| integrase, site-specific recombinase [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|253569574|ref|ZP_04846984.1| integrase [Bacteroides sp. 1_1_6]
 gi|29340054|gb|AAO77848.1| integrase, site-specific recombinase [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|251841593|gb|EES69674.1| integrase [Bacteroides sp. 1_1_6]
          Length = 293

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 53/276 (19%), Positives = 104/276 (37%), Gaps = 24/276 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIR----KSGDFDYRKITTKHIRSGV---ES 125
           LI  +     +  + +  + +++     Q+      + G FD  ++  + IR  +     
Sbjct: 2   LIKSFLDYLRYERNYSEKTVLAYGEDIKQLQEFAQEEYGKFDPLEVEGELIREWIVSLMD 61

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           R +T +S  + L+S+R  +K+ +RQ  V ++P   +  PK K        + +M +    
Sbjct: 62  RGYTSTSVNRKLSSLRSFYKYLLRQGEVTVDPLRKITGPKNKKPLPAFLKESEMDKLLDD 121

Query: 186 WS-----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPD 239
                  +G + RL       +G+R S+      + +  +   +K T K      +   D
Sbjct: 122 TDFGEGFKGCRDRLIIGVFYATGIRLSELIGLDDKDVDFSASLLKVTGKRNKQRLIPFGD 181

Query: 240 GFMKLL--------AMTPIGKETFFINNDKQKMNATQFSIWFKA-KATKAGVNK-SAHGV 289
              +L+           P   E FF+  D +++         K   +  A + K S H +
Sbjct: 182 ELKELMLEYINVRNETIPERSEAFFVKEDGERLYKNLVYNLVKRNLSKVATLKKRSPHVL 241

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           R   AT   +  A    +    G ++V   E YT  
Sbjct: 242 RHTFATTMLNNDAELGAVKELLGHESVATTEIYTHA 277


>gi|300871744|ref|YP_003786617.1| tyrosine recombinase XerD [Brachyspira pilosicoli 95/1000]
 gi|300689445|gb|ADK32116.1| tyrosine recombinase, XerD [Brachyspira pilosicoli 95/1000]
          Length = 307

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 40/287 (13%), Positives = 103/287 (35%), Gaps = 23/287 (8%)

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY-----RKITTKH 118
            R +   L+ L+ E+       + A ++  S+     + I+   D +         T + 
Sbjct: 6   KRIEANELENLLEEFADYLQTLNYAAHTINSYTKDLKEYIKFLEDNNIDFNDATHYTIRD 65

Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
             + ++++K   ++  + L+S++  +K+ +R  Y      ++++ PKR+    +  +  D
Sbjct: 66  YFASLKNKKLKNATTSRHLSSIKKFYKYLIRNGYSDKTRIINMKSPKREEHIAKFLSLND 125

Query: 179 MQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234
           + +      E      + ++   F+   GLR S+     +  +     +++    G+ + 
Sbjct: 126 IDKILEIDDENDFTIIRDKMMAIFMYAIGLRASELISIKLNMMHKGSTTLRILGKGSKVR 185

Query: 235 -VELPD-----------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
            + L                 +           F+N   + ++        K     A +
Sbjct: 186 EIPLIPIIYDNWDLYMQKRAIIQREYGSNNNYLFVNRFGKPISDRSVRNSMKRLMRMANI 245

Query: 283 --NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
             + S H +R   AT   +  A    +    G +++   + YT   +
Sbjct: 246 SVDFSPHTLRHTFATHLLNNDAEIRGVQELLGHESISTTQRYTHVTN 292


>gi|77918422|ref|YP_356237.1| site-specific recombinase/integrase [Pelobacter carbinolicus DSM
           2380]
 gi|77544505|gb|ABA88067.1| site-specific recombinase/integrase [Pelobacter carbinolicus DSM
           2380]
          Length = 482

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 61/339 (17%), Positives = 119/339 (35%), Gaps = 26/339 (7%)

Query: 9   PFVTKERTRHGKIIY--YFRKGHGRRIRLPYPH---ESTFIPAYMSALTGSTPKREYINS 63
           P +       G   +   +R    +++    P+   E        + +  +    E + S
Sbjct: 124 PGLHICVNMRGNKRWLFRYRLYGRKKVVAIGPYPSIEPPLAKQMANEMQRNLALGERVVS 183

Query: 64  PR---KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
           PR   K+  T      +Y + A       + +  +    +QII K G+     +T K I+
Sbjct: 184 PRAQQKQQKTFGEFARKYLEHA--KQTKKSWKDDYNKLTNQIIPKWGEVPLTCLTPKEIQ 241

Query: 121 SGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPWTK 176
             +   K     ++A +    + VL+  AV+   +    NP   V + +      R  + 
Sbjct: 242 GYLNQVKARTSGTNANRHYAVLNVLYNLAVKWGEIDPWKNPMPGVSKFRDNPGRTRYLSM 301

Query: 177 EDMQQFKSFWSE--GSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTI 232
           E+ ++F +   E  G     A   LL++G R  +  ++  + +  +     +   K G  
Sbjct: 302 EECKRFLAALEEAPGQLAACALRLLLFTGCRAGEVLKSKWEDVSMEGRTMLLPETKNGKS 361

Query: 233 ITVEL----PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--- 285
             V L         KL           F  + + K   T     F+     AG+  +   
Sbjct: 362 RVVHLNSLSLAEIEKLKDFRNPSNPYLFPGSSEDKPLGTVRKT-FEHALKLAGLQGTDVV 420

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            H +R   A++ A+ G +   +  + G  +V   E Y  
Sbjct: 421 IHTLRHTHASLLANLGESLETIKVSLGHSSVKMTERYAH 459


>gi|254492199|ref|ZP_05105373.1| tyrosine recombinase XerC [Methylophaga thiooxidans DMS010]
 gi|224462524|gb|EEF78799.1| tyrosine recombinase XerC [Methylophaga thiooxydans DMS010]
          Length = 302

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 38/269 (14%), Positives = 82/269 (30%), Gaps = 22/269 (8%)

Query: 85  GSLAVNSRISFESYFDQII------RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLT 138
             L+ ++  ++     Q+I        S     +    +   + +  +     +  + L+
Sbjct: 20  RRLSHHTVNNYRRDLTQLIDFCQGQELSHWHSVKPADLRQFIAFLHRKGLASRTIQRMLS 79

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRL 194
           + R L+++ +RQ     NP  +V+ PK +         + M          +    + R 
Sbjct: 80  ATRSLYQYLIRQGLAETNPAQAVQAPKAEKRLPSTLDVDQMNALLDQTQADTFVACRDRA 139

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLL 245
             E    SGLR ++     ++ +      +     G    V          L D   K  
Sbjct: 140 IMELFYSSGLRLAELATLDLRDIDFGDQLVHVTGKGNKDRVCPVGAVAIKALQDWLEKRD 199

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGAT 303
                 +   FI    +++              K G++     H +R   A+   ++   
Sbjct: 200 QTGFFDQPAVFITQQGRRLGMRSIQKRLSFWGKKQGISDRVHPHRLRHAFASHMLESSGD 259

Query: 304 AHELMATYGWKTVDQAETYTKGADRIRLG 332
              +    G   +   + YT   D   L 
Sbjct: 260 LRAVQELLGHSDISTTQIYTH-VDFQHLA 287


>gi|283782472|ref|YP_003373227.1| tyrosine recombinase XerC [Pirellula staleyi DSM 6068]
 gi|283440925|gb|ADB19367.1| tyrosine recombinase XerC [Pirellula staleyi DSM 6068]
          Length = 323

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 42/268 (15%), Positives = 92/268 (34%), Gaps = 31/268 (11%)

Query: 88  AVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL 143
           + + R    S  D + +  G          +  +   S +    +  +S  + L S+R  
Sbjct: 23  SKSYREDLTSLADYLTQAYGREPKPSEITPLDLRGYVSALHEAGYAKTSIARRLASLRTF 82

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKSFWSEGSQPRLAFEFL 199
           +K+A R+     NP   +  P++  +       +++    +   +    G + R   E L
Sbjct: 83  YKFAQREGMADSNPAKPLRNPRKDRKLPHFLAGDELGKLLEAPPADDPAGLRDRAMLETL 142

Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-ELPDGFMKLLA------------ 246
             +GLR S+      + L  +   ++ +  G+   +  L    ++ +             
Sbjct: 143 YSAGLRVSELVGMNDEDLDLDEGVVRIRGKGSKERLAPLGSFALRAIKKWLAHRKLASIS 202

Query: 247 -------MTPIGKET-FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATI 296
                   +  G  T  F N   +++     +   +      G++   + H +R   AT 
Sbjct: 203 VSSTRKSASKAGHGTPVFTNKFGKRLTTRSVARMLEKYLKLTGLDLRTTPHTLRHTFATH 262

Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324
             D GA    +    G K++   + YT 
Sbjct: 263 LLDRGADIRSVQELLGHKSLVTTQIYTH 290


>gi|253699136|ref|YP_003020325.1| tyrosine recombinase XerC [Geobacter sp. M21]
 gi|251773986|gb|ACT16567.1| tyrosine recombinase XerC [Geobacter sp. M21]
          Length = 293

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 43/260 (16%), Positives = 88/260 (33%), Gaps = 21/260 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFD-------YRKITTKHIRSGVESRKHTPSSAIQFL 137
            +++ ++  ++ S  +Q +                 +  +   + +       SS  + L
Sbjct: 16  RNVSPHTLAAYRSDLEQFLSFLAKEREEPRAEEVDHLAIRRYLAQLHKGCAK-SSIGRKL 74

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPR 193
           +++R L+++ +R+  +  NP   V  PKR+         + +    +  + GS    + R
Sbjct: 75  SAIRALYRYLMREGKLEKNPAELVSTPKREKRLPFHLNIDQVSALVTAPAGGSELPLRDR 134

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPD----GFMKLL--A 246
              E L   G+R S+     V  +       +   K G    V +           L   
Sbjct: 135 AILETLYSCGIRVSELTGMNVGDMDLAAGLARVMGKGGKERLVPVGSCAGSALAAYLAER 194

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKAT-KAGVNK-SAHGVRKFSATISADAGATA 304
             P   E   +N    ++     +    A     A + K S H +R   AT   + GA  
Sbjct: 195 ADPGPAEPLILNARGGRLTRRSVARIVDAHMLMIATMRKVSPHTLRHTFATHLLEGGADL 254

Query: 305 HELMATYGWKTVDQAETYTK 324
             +    G  ++   + YT 
Sbjct: 255 RAIQELLGHASLSTTQKYTH 274


>gi|213691797|ref|YP_002322383.1| tyrosine recombinase XerD [Bifidobacterium longum subsp. infantis
           ATCC 15697]
 gi|213523258|gb|ACJ52005.1| tyrosine recombinase XerD [Bifidobacterium longum subsp. infantis
           ATCC 15697]
 gi|320457891|dbj|BAJ68512.1| recombinase [Bifidobacterium longum subsp. infantis ATCC 15697]
          Length = 308

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 42/271 (15%), Positives = 90/271 (33%), Gaps = 31/271 (11%)

Query: 85  GSLAVNSRISFE----SYFDQIIRKSGDFD--YRKITTKHIRSGVESRKHTPSSAIQFLT 138
             LA  +  ++E     Y D +  +         K   +   + ++    +  S  + L 
Sbjct: 20  RGLATATVTAYESDIAKYIDWLETRGIHEPDAITKQDVEDYIAALDQAGESARSKARRLA 79

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG-------SQ 191
           S+    ++A+ Q  V  +   +V+ PK  +      T +++ +     + G        +
Sbjct: 80  SIHEFHRFALGQHAVTADVSAAVKAPKGASTLPDVLTVDEVTRLLDTAAVGGSTDPVVLR 139

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPD----------- 239
            +   EF+  +G R S++    +  +  +   +    K      V L             
Sbjct: 140 DKALLEFMYATGCRVSEATGTNLDDIDLDEHIARLMGKGSKQRLVPLGSYACRAITAYLN 199

Query: 240 ----GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFS 293
                  +  +     +   F+N   ++++        KA   +AG+ K    H +R   
Sbjct: 200 AGRGELERRSSAKIPERRALFLNKRGKRISRQSVWEIVKATGERAGITKPLHPHTLRHSF 259

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324
           AT     GA    +    G  +V   + YT 
Sbjct: 260 ATHLIQGGADVRTVQELLGHASVTTTQIYTH 290


>gi|169826684|ref|YP_001696842.1| hypothetical protein Bsph_1102 [Lysinibacillus sphaericus C3-41]
 gi|168991172|gb|ACA38712.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41]
          Length = 238

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 37/211 (17%), Positives = 81/211 (38%), Gaps = 10/211 (4%)

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
            PSS    +  ++ LF+W+  + Y   NP   ++ PK      +  ++ +++  +     
Sbjct: 21  KPSSLGHRIRCVKSLFRWSHEEGYTLKNPAAKLKEPKLGKRIPKFLSEVEIEHLREACQT 80

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVE----LPDGFMK 243
            +  +  FEF+  +G R  +  +   + +   +   I   K      V           +
Sbjct: 81  -TMEKALFEFMYSTGCRIGEVVKLNREDIDFQSNSVIVQGKGDKEREVYFNTRCSIWLKR 139

Query: 244 LLAMTPIGKETFFINND--KQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISAD 299
            L      +   FI +   K++M+        K  + +A + KS   H +R   AT   +
Sbjct: 140 YLDEREDREPCLFITDRRPKRRMSIDNLRYIIKRISNRASIKKSIHPHQLRHSYATHMIN 199

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIR 330
            GA    + +  G +  +  + Y + + ++R
Sbjct: 200 NGAPIDVIQSLLGHEKSETTKIYAQLSGKLR 230


>gi|265753988|ref|ZP_06089343.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|263235702|gb|EEZ21226.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 390

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 80/221 (36%), Gaps = 15/221 (6%)

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV---ERPKRKTEGIRPWTKE 177
             +E R  + ++A ++L         AVRQ  +  NP   +   ER + K       T E
Sbjct: 162 KYIEPRPISQNTASRYLGMFSTTLNNAVRQGIIRNNPMKELDAKERIQPKDGKKEYLTIE 221

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL------QNNIFSIKTQKTGT 231
           +++   +  S   + + AF F  ++GLR SD  +    H+      +     ++ QKT  
Sbjct: 222 ELKALMATDSYRPEVKQAFIFACFTGLRLSDMYKLAPIHIFKTPDGKGEYIDMEMQKTEK 281

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289
            + + L +   + L         FF          T      +  A  AGV K  S H  
Sbjct: 282 PVIIPLSEEAKRWLPKPKGITTPFFDI----PTTQTVIGRALRKWAEAAGVEKHISFHCS 337

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
           R    T+    GA         G   +   E Y K  D+ +
Sbjct: 338 RHTFGTMMLTLGADLFTTSKLMGHTNIQTTEIYAKIVDKKK 378


>gi|71275473|ref|ZP_00651759.1| Phage integrase [Xylella fastidiosa Dixon]
 gi|71902062|ref|ZP_00684102.1| Phage integrase [Xylella fastidiosa Ann-1]
 gi|71163773|gb|EAO13489.1| Phage integrase [Xylella fastidiosa Dixon]
 gi|71728173|gb|EAO30364.1| Phage integrase [Xylella fastidiosa Ann-1]
          Length = 339

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 61/333 (18%), Positives = 112/333 (33%), Gaps = 28/333 (8%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
           +P F  + + + G + YY+  G   R   P          Y  A+     + E+      
Sbjct: 11  IPRFRVRPQ-KSGVVYYYYDHGGKPRKETPLG------RDYGLAI-KRWAELEHAQITPA 62

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVE 124
              T + +   YR      + A N++         +++   D    +  I   +IR  ++
Sbjct: 63  IAVTFRHVAEHYRAEVI-PTKAYNTQRVEHRCLAPLLKFFDDPPAPFEAIKPVNIRQYLD 121

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVA-INPCLSVERPKRKTEGIRPWTKEDMQQFK 183
            R      A + ++    L+ WA  +      NPC  + R K     +      D   ++
Sbjct: 122 WRTSKV-IANREVSVFSHLWNWARSKGITDLPNPCGGIRRNKATGRDVYV----DDTTYR 176

Query: 184 SFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
           + +    Q  R A +    +G R SD      +H+ N    I   KTG  + + +     
Sbjct: 177 AVYQAADQTLRDAMDLAYLTGQRVSDVVSMDERHIVNGALEICQAKTGAKLAITVTGELA 236

Query: 243 KLLAMTPIGKE-------TFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKF 292
            L+      K           ++    +++ T     F      AG+ K       +R  
Sbjct: 237 VLIKRIFDRKRGMKLRSTRLIVDAKGLELSRTGLRYRFDKARVAAGIAKEIFQFRDLRAK 296

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKG 325
           +AT  AD      +  A  G  +V   E Y + 
Sbjct: 297 AATDKADLAGDIRQAQAQLGHASVTMTEHYVRK 329


>gi|256840355|ref|ZP_05545863.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256737627|gb|EEU50953.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 393

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 56/294 (19%), Positives = 117/294 (39%), Gaps = 27/294 (9%)

Query: 62  NSPRKKPTTLKWLISEYRK-SAHWGSLAVNSRISFESYFDQIIRKSGDFDY--RKITTKH 118
           +  +K   TL   + ++ K +A     ++ ++ +  +  DQ +   G  ++  + +  + 
Sbjct: 86  DKVKKSRMTLTKWMDDFVKYNAELSESSMKTKRNTHARIDQYLLHIGKPEFLLKDVDKEF 145

Query: 119 IRSGVESRKH-TPSSAIQFLTSM--RVLFKW-------AVRQEYVAINPCLSVE---RPK 165
            +  +   K  T +   + L++   R+   +       AVR   +  NP L +E   +P+
Sbjct: 146 CKGFITFLKTCTYNDGKKQLSTTTCRMFVNYFGSSLAKAVRDGLIEQNPFLLLEAKEKPQ 205

Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL------QN 219
           ++       T E++++  +        + AF F  ++GLR SD        +      + 
Sbjct: 206 KRVAEREFLTIEEIKKVMNTPCRYELVKKAFLFSCFTGLRYSDMKALNWSEIHKAADGKT 265

Query: 220 NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK 279
                   KT   +T+ L +   K +     G +  F N     + +T   +  K     
Sbjct: 266 EYIDHIQVKTKDRVTIPLSEETKKWMPKREEGIDNIFHNLT---ITSTTVEVVLKEWMEA 322

Query: 280 AGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           AG+ K  + H  R  +AT+    GA+ + +    G K++   E Y K  D+ +L
Sbjct: 323 AGITKHITYHCSRHTAATMLLTLGASIYVVSKILGHKSIKMTEIYAKIVDKKKL 376


>gi|94986556|ref|YP_594489.1| site-specific recombinase XerC [Lawsonia intracellularis
           PHE/MN1-00]
 gi|94730805|emb|CAJ54167.1| Site-specific recombinase XerC [Lawsonia intracellularis
           PHE/MN1-00]
          Length = 313

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 45/272 (16%), Positives = 96/272 (35%), Gaps = 32/272 (11%)

Query: 85  GSLAVNSRISFESYFDQI---IRKSGDF--DYRKITTKHIRSGVES---RKHTPSSAIQF 136
              ++ ++ ++     Q    +R  G        I  KHI+    S   +K T +S  + 
Sbjct: 18  KGFSLATQDAYRRDISQFEVYLRTIGLTLEHPEHINKKHIQQFSASLYYKKLTRTSIARK 77

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS------------ 184
           L ++R LF++ ++  ++  NP + V  PK+  +       + +                 
Sbjct: 78  LAALRSLFRYLLKTHHIKDNPAVGVHNPKQHVKYPEILNVDQVFLLLKGANNILKTSHTG 137

Query: 185 -FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT--------- 234
              +   +     E L  SGLR S++    V  ++     ++    G             
Sbjct: 138 LELAIAHRNNALLELLYGSGLRISEALCLNVSDIRTEDGFVRVIGKGNKERLAPLSDTSI 197

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKF 292
           V L +       +  +G++  F+    ++++  Q     +    +AG+  +   H +R  
Sbjct: 198 VALEEWLAIRHMVATLGEQALFVGVRGKRLHRRQTIRILEELCLQAGLPLTTAPHTLRHS 257

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324
            AT   + GA    +    G   +   + YT 
Sbjct: 258 FATHLLEGGANLRAVQELLGHARLSTTQRYTH 289


>gi|30248355|ref|NP_840425.1| phage integrase domain/SAM domain-containing protein [Nitrosomonas
           europaea ATCC 19718]
 gi|30138241|emb|CAD84249.1| Phage integrase:Phage integrase N-terminal SAM-like domain
           [Nitrosomonas europaea ATCC 19718]
          Length = 321

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 40/283 (14%), Positives = 96/283 (33%), Gaps = 32/283 (11%)

Query: 74  LISEYRKS-AHWGSLAVNSRISFESYFDQI----------IRKSGD-------FDYRKIT 115
           L+SEY    A   SL++ ++ S+      +            ++G               
Sbjct: 15  LLSEYLAYLASTRSLSLLTQHSYRRDLVALVCCIAAQHQSEHENGHEVTDASLTRLHSHD 74

Query: 116 TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
            +H  + +     +  S  + L++ R  +++ +R  +   NPC  +  PK   +     +
Sbjct: 75  IRHFIAHLHHGGLSGRSLARMLSAWRGFYRYLMRHHHHTENPCQDIRVPKSPRKLPHALS 134

Query: 176 KEDMQQFKSFWSE---GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
            ++  Q  +F       ++    FE    SGLR ++  R     +  +   ++    G+ 
Sbjct: 135 PDEAAQLLAFDPADALATRDLAMFELFYSSGLRLAELTRLQPTDIDFSEGIVRVTGKGSK 194

Query: 233 ITV-----ELPDGFMKLLAM----TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
             +              L +       G+   F++   Q+++    ++    +A    ++
Sbjct: 195 TRIVPVGEPALRALQAWLPLRSAWLTSGETALFLSRHGQRIHPRTIAVRLHQRARLQNLD 254

Query: 284 KS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
                H +R   A+    +      +    G  ++   + YT 
Sbjct: 255 DRVHPHALRHSFASHLLQSSGDLRAVQEMLGHSSIRSTQVYTH 297


>gi|85708393|ref|ZP_01039459.1| integrase [Erythrobacter sp. NAP1]
 gi|85689927|gb|EAQ29930.1| integrase [Erythrobacter sp. NAP1]
          Length = 295

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 44/265 (16%), Positives = 90/265 (33%), Gaps = 20/265 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLF 144
              A N+  ++    D      GD D +       +   +     PS+  +  +++R  F
Sbjct: 16  RGAAANTLAAYRRDLDGAEEALGDLD-KASRAAVAKLSAQWASLAPSTVARKASALRQFF 74

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW--------SEGSQPRLAF 196
            +AV + +   +P  ++ +P+ +    +  + E ++                  +     
Sbjct: 75  GFAVDEGWREDDPSGALPKPRTRRPLPKILSHEAVETLLQRAELEANSGQPTALRQLALL 134

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLL------AMTP 249
           E L  SGLR ++     +  +  +   I    K G    V + +   + L        + 
Sbjct: 135 EMLYGSGLRATELVSLPLVSVPRDAPLITVKGKGGQARMVPVSERAKEALAEWVKVRPSD 194

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHE 306
                 F +   + ++  +     K  A +A ++    S H +R   AT   + GA    
Sbjct: 195 PPTGHLFPSRGGKHLSRVRLFQILKELAVRADLDPAGISPHVLRHAFATHLLEGGADLRV 254

Query: 307 LMATYGWKTVDQAETYTKGADRIRL 331
           L    G   +   + YT   D  RL
Sbjct: 255 LQTLLGHADIATTQIYTH-VDAARL 278


>gi|222474757|ref|YP_002563172.1| Tyrosine recombinase (xerD) [Anaplasma marginale str. Florida]
 gi|255003855|ref|ZP_05278656.1| Tyrosine recombinase (xerD) [Anaplasma marginale str. Virginia]
 gi|222418893|gb|ACM48916.1| Tyrosine recombinase (xerD) [Anaplasma marginale str. Florida]
          Length = 312

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 43/283 (15%), Positives = 103/283 (36%), Gaps = 34/283 (12%)

Query: 87  LAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVESRKHTPSSAIQFLTSMR 141
           ++ N+  S+ S  + +    G  + R +       +     + SR ++P++  + ++++R
Sbjct: 20  VSPNTSSSYRSDLENLAEFLGRRNLRMVDASAADLRAYVRSLNSRGYSPATVARRISAIR 79

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK-----SFWSEGSQPRLAF 196
            L+ +      +  +P  +++  K      +  T +++ +           EG +     
Sbjct: 80  GLYGFLYGDRIIDGDPAANLDSCKLGRPLPKVLTVDEVDKLLCAAGSDLSVEGRRTAAIV 139

Query: 197 EFLLYSGLRCSDSCRAGVQHLQ--------NNIFSIKTQKTGTIITVELPDGFMKLLAMT 248
             L  SG+R S+    G   ++        +    +   K G    + L +  +  +   
Sbjct: 140 NILYSSGVRISELINLGFYDIESMLKEQRSDVGHLVIKGKAGRERLILLNEVAIASIVAY 199

Query: 249 PIGKETFFINNDKQKM------------NATQFSIWFKAKATKAGVN---KSAHGVRKFS 293
              ++ F +    +              +  +     KA A  AGV+    S H +R   
Sbjct: 200 LAVRDHFIVGQKSESRWLFPGAKFDQCISRQRVGQLLKALAIVAGVDPKRISPHKLRHSF 259

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKN 335
           AT   + G+    +    G  ++   + YT  A DR++  ++ 
Sbjct: 260 ATHLLNNGSNVVFIQKMLGHASLSTTQIYTYVANDRLKEALQT 302


>gi|319654979|ref|ZP_08009052.1| hypothetical protein HMPREF1013_05674 [Bacillus sp. 2_A_57_CT2]
 gi|317393333|gb|EFV74098.1| hypothetical protein HMPREF1013_05674 [Bacillus sp. 2_A_57_CT2]
          Length = 258

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 46/232 (19%), Positives = 91/232 (39%), Gaps = 11/232 (4%)

Query: 102 IIRKSGDFDYRKITTKHIRSGVESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCL 159
           +I+  GD     ITT+ I+  +         SS    +  ++ LFKWA  ++YV+INP  
Sbjct: 13  LIKYFGDIKITDITTESIKLYLGEVAAELKASSLCHRIRFIKSLFKWAQEEKYVSINPVS 72

Query: 160 SVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN 219
           S++ PK ++   +  T+E+++  +      +  +  FEF+  +G R  +        +  
Sbjct: 73  SIKEPKPESRIPKFLTEEEIELLREACKT-TFEKALFEFMYSTGYRIGEVVNLDKHSINM 131

Query: 220 ---NIFSIKTQKTGTIITV--ELPDGFMKLLAMTPIGKETFFINNDK-QKMNATQFSIWF 273
              ++      K    + +         +        ++  F+      +M+  Q     
Sbjct: 132 AEQSVIVFGKGKKEREVYINTRCSIWLKRYREERADDQQALFVTIRAPHRMSIAQMRYVI 191

Query: 274 KAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           K  + +AG+NK    H +R   AT   + GA    +    G +  +    Y 
Sbjct: 192 KQISKRAGINKCIYPHQLRHSYATTLINNGAPLEVIQNLMGHEKSETTRVYA 243


>gi|329113917|ref|ZP_08242684.1| Shufflon-specific DNA recombinase [Acetobacter pomorum DM001]
 gi|326696664|gb|EGE48338.1| Shufflon-specific DNA recombinase [Acetobacter pomorum DM001]
          Length = 392

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 61/327 (18%), Positives = 106/327 (32%), Gaps = 26/327 (7%)

Query: 19  GKIIY--YFRKGHGRRIRLPYPHES--------TFIPAYMSALTGSTPKREYINSPRKKP 68
           G+ IY   FR G   R     PH            +        GS P  +      +  
Sbjct: 49  GRKIYLAQFRAGGRIRRVNIGPHGPLTPDQARTEAMKHLSDVRLGSDPGAQRDR--LRAA 106

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRK 127
            T+K     +           +++  +    D  II K G      IT   +    +  K
Sbjct: 107 ATMKEFGKRFLDEHVASHCKPSTQYEYRRCVDLFIIPKLGTLKVIDITRADVVELHQGLK 166

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAI--NPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
            TP  A + L  + ++F  A      +   NPC  V+R K      R  T +++ +    
Sbjct: 167 ETPYQANRVLGVLSIMFTLADTWGVRSDGSNPCWKVKRYKEVKRE-RYLTPDELARLGKV 225

Query: 186 WSEG---SQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTGTIITVELPDG 240
             E     +       LL +G R  +      +++     +  +   KTG  + V +   
Sbjct: 226 LREAEGEPEAAYCIRLLLLTGCRLGEIQTLKWEYVDARAGVLRLPDSKTGAKV-VPIGKA 284

Query: 241 FMKLLAMTPI--GKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATIS 297
            + +LA  P   G         + +        W + +A +AG++    H +R   A+ +
Sbjct: 285 ALDVLADIPRIEGNPYVITGKMEGQYLTDTQKPWRRLRA-RAGLDTLRIHDLRHSFASDA 343

Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324
              GA    +    G   V     Y  
Sbjct: 344 LQLGADLTMIGRLLGHTQVQTTARYAH 370


>gi|262038210|ref|ZP_06011604.1| tyrosine recombinase XerD [Leptotrichia goodfellowii F0264]
 gi|261747791|gb|EEY35236.1| tyrosine recombinase XerD [Leptotrichia goodfellowii F0264]
          Length = 315

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 47/276 (17%), Positives = 93/276 (33%), Gaps = 22/276 (7%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYR-KITTKHIRSGVESRKHTPSS 132
           I E+     +    + N+   +E                 K    +      SR+   +S
Sbjct: 34  IKEFSDYLSFEKGSSKNTVAGYERDLKIFFDYIQKSATDIKEEDIYEYIEEISRELKRNS 93

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS---FWSEG 189
            ++ + S+R  +K+    + V  +P   ++  KR+         ++++          EG
Sbjct: 94  VLRKIASIRTFYKFCYLNKMVKEDPTGMIKSLKREKRLPEVLNLKEVKTIIDNIGHTPEG 153

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT--QKTGTIITVELPDGFMK---- 243
            + RL  +FL+ +G R S+     ++ ++N  +       K      V + +        
Sbjct: 154 MRDRLIIKFLIATGARVSEILNLNIKDVENQGYEFIKVLGKGSKYRIVPIYESLENEIKD 213

Query: 244 ----LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATIS 297
                       + +F +  D +      F    K  A  AG+ K+   H  R   AT+ 
Sbjct: 214 YISNYRPKLKGSESSFKLFPDTR---RENFWKRLKKTAKDAGIEKNVYPHIFRHSVATVL 270

Query: 298 ADAGATAHELMATYGWKTVDQAETYTK--GADRIRL 331
              GA    +    G   +   E YT    +D  R+
Sbjct: 271 LSNGADIRIVQEILGHANISTTEIYTHVEKSDLKRI 306


>gi|317504008|ref|ZP_07962015.1| tyrosine recombinase XerD [Prevotella salivae DSM 15606]
 gi|315664868|gb|EFV04528.1| tyrosine recombinase XerD [Prevotella salivae DSM 15606]
          Length = 293

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 43/277 (15%), Positives = 95/277 (34%), Gaps = 28/277 (10%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESRKH 128
           +I+E+     +  + +  +  ++           G+ D    ++ + +  IR  +ES   
Sbjct: 2   MINEFLNYLKFERNRSDLTIKNYGEDLRAFEEFYGNLDSRLSWKSVDSDVIRDWMESMMD 61

Query: 129 TPSSA---IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
             ++A    + L+++R  +++A+ ++ V  NP   V  PK+     +   + +M +    
Sbjct: 62  KGNNATSINRRLSALRSFYRFALTRKLVDKNPVHGVTGPKKGRPLPQFLKENEMDRLLDA 121

Query: 186 WS-----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPD 239
            S     E  + R        +G+R S+        +  +N     T K      +   +
Sbjct: 122 ESWTESFEDVRDRTVIMTFYETGIRLSELIGLDDSMVDFSNRQLKVTGKRNKQRVIPFGE 181

Query: 240 GFMKLLA--------MTPIGKETFFINNDKQKMN----ATQFSIWFKAKATKAGVNKSAH 287
             +  L               E  F++   Q+M                 T     ++ H
Sbjct: 182 ELLVTLRDYMKCRDKEVNRQSEALFVSTKGQRMTSSQVREGVKRNLSKVCTLK--KRTPH 239

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            +R   AT   +  A    +    G +++   E YT 
Sbjct: 240 VLRHTFATAMLNNKAGIESVKKLLGHESLSTTEIYTH 276


>gi|154686030|ref|YP_001421191.1| site-specific tyrosine recombinase XerC [Bacillus amyloliquefaciens
           FZB42]
 gi|154351881|gb|ABS73960.1| CodV [Bacillus amyloliquefaciens FZB42]
          Length = 305

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 39/276 (14%), Positives = 95/276 (34%), Gaps = 27/276 (9%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV------ESRK 127
           L  EY +     + +  + +++ +  ++        +   +                 + 
Sbjct: 11  LFVEYLQIE--KNYSQYTIVNYVNSIEEFGMFLHAQNINGMKEAAYHDVRIFLTEAYEKG 68

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-- 185
            +  +  + ++++R  +K+ +R++ V  NP   V  PK++    +   ++++++  +   
Sbjct: 69  LSRKTISKKISALRSFYKFLMREKLVEENPFQLVHLPKQEKRIPKFLYEKELEELFAVSD 128

Query: 186 --WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----------- 232
                G + +   E L  +G+R S+ C   V  L   + ++     G             
Sbjct: 129 RSQPSGMRDQALLELLYATGMRVSECCTLTVGDLDLFMDTVLVHGKGKKQRYIPFGSYAR 188

Query: 233 --ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG--VNKSAHG 288
             + + +  G   LL       +  F+N     + A            KA   ++   H 
Sbjct: 189 DALELYINSGRQCLLEKAKEPHDVLFVNQRGGPLTARGIRYILSGLVKKASGTLHIHPHM 248

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +R   AT   + GA    +    G   +   + YT 
Sbjct: 249 LRHTFATHLLNEGADLRSVQELLGHSNLSSTQIYTH 284


>gi|89895297|ref|YP_518784.1| hypothetical protein DSY2551 [Desulfitobacterium hafniense Y51]
 gi|89334745|dbj|BAE84340.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 298

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 43/272 (15%), Positives = 93/272 (34%), Gaps = 22/272 (8%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIR----KSGDFD-------YRKITTKHIRSGV 123
           +S +       + + ++ +++     Q       + G+               +     +
Sbjct: 7   LSLFDGHLKTQNRSQHTLMAYHKDLIQFFEFAARELGEEPEKVTVDQVDIYIVRSFLGEM 66

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
             R     S  + L+++R  FK+  R+  +  NP   +  PK   +     + E++ +  
Sbjct: 67  TERGLERKSMARKLSALRAFFKFLCREGILQKNPIQRIATPKLGRKLPHFLSLEELDRLI 126

Query: 184 SFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVEL- 237
                    G++ ++  E L  SGLR S+      + +      ++ +  G     V L 
Sbjct: 127 RTPDCATLLGARDQVILELLYGSGLRVSELADLNCRDIDEGTSLLRVRGKGNKERIVPLT 186

Query: 238 ---PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKF 292
               +   + L M    +E   +N    +++           A +AG+  +   H +R  
Sbjct: 187 HYALEAARQYLEMREDKQEALLLNYQGTRLSVRSIRRILDGLALEAGLSQHLHPHMLRHS 246

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324
            AT   D GA    +    G   +   + YT 
Sbjct: 247 FATHLLDGGADLRSVQELLGHAKLSSTQIYTH 278


>gi|304384441|ref|ZP_07366845.1| tyrosine recombinase XerC [Prevotella marshii DSM 16973]
 gi|304334461|gb|EFM00750.1| tyrosine recombinase XerC [Prevotella marshii DSM 16973]
          Length = 301

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 44/277 (15%), Positives = 98/277 (35%), Gaps = 28/277 (10%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFE---SYFDQIIRKSG-DFDYRKITTKHIRSGVESRKH 128
           ++ ++     +    +  +  S++     F+  I+  G D  +  +    IR  +ES   
Sbjct: 8   MVDQFLSYLQYEKRYSPRTVQSYDEDLKEFEAYIKVQGNDLSWHSVDADVIRGWMESMMD 67

Query: 129 T---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
                ++  + L+++R  +++++ +  V+ +P  +V  PK++    +   + +M +    
Sbjct: 68  KGNVATTINRRLSALRSFYRFSLSRNLVSHDPAHAVVGPKKEKPLPQFVKETEMDELFDK 127

Query: 186 WSEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPD 239
              G      + R        SG+R S+     V  +      ++ T K      +   +
Sbjct: 128 NRWGDTFKDVRARTILLTFYSSGIRVSELTGLHVSDIDFASSELRVTGKRNKQRVIPFGE 187

Query: 240 GFMKLLAM--------TPIGKETFFINNDKQKMNATQFSIWFKAK----ATKAGVNKSAH 287
              + L               +  FI    + M  +Q     K       T     +S H
Sbjct: 188 ELAEQLVRYLAIREVTAGYDTDALFITEKGRPMTMSQVQYEVKKYLGRVCTLK--KRSPH 245

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            +R   AT   + GA    +    G +++   E YT 
Sbjct: 246 VLRHTFATAMLNHGAGLESVKKLLGHESLSTTEIYTH 282


>gi|187250446|ref|YP_001874928.1| integrase family protein [Elusimicrobium minutum Pei191]
 gi|186970606|gb|ACC97591.1| Integrase family protein [Elusimicrobium minutum Pei191]
          Length = 291

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 44/262 (16%), Positives = 92/262 (35%), Gaps = 23/262 (8%)

Query: 85  GSLAVNSRISFESY---FDQIIRKSGDFD--YRKITTKHIRSGVESRKHTPSSAIQFLTS 139
             L+ N+  ++ +    F     ++       R          ++ +  +P S  +   +
Sbjct: 14  RQLSKNTIYAYTNDVGDFFAFCEENNTAPQNVRPDFIDEYIYHLKQKGLSPKSVFRKTQA 73

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS---EGSQPRLAF 196
           ++  +K+ +    +  +PC  +  PK   +     TKE++ +  SF        +     
Sbjct: 74  VKSFYKYLIINGDIKEDPCRFLLSPKLTQKIPETLTKEEISRLLSFPPKTFAEIRTLTIL 133

Query: 197 EFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254
           E     GLR S+     ++  +L++    +   K      + + D  +K+L +    +E 
Sbjct: 134 ELFYACGLRVSELVSLRIESVNLKDKWV-LAYGKGAKQRFIPIHDRAVKVLEIYLSEREK 192

Query: 255 F----------FINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGA 302
           +          FIN + +K++              AG+ +S   H  R   AT     GA
Sbjct: 193 YLKGKESASEIFINKNGKKISRMSVWKDVNDLGRLAGIERSLHPHLFRHTFATHLLIGGA 252

Query: 303 TAHELMATYGWKTVDQAETYTK 324
               L    G   +   + YT 
Sbjct: 253 DLRSLQEMLGHADLQTTQIYTH 274


>gi|89898494|ref|YP_515604.1| site-specific tyrosine recombinase XerC [Chlamydophila felis
           Fe/C-56]
 gi|123763207|sp|Q253S9|XERC_CHLFF RecName: Full=Tyrosine recombinase xerC
 gi|89331866|dbj|BAE81459.1| integrase/recombinase [Chlamydophila felis Fe/C-56]
          Length = 312

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 37/238 (15%), Positives = 81/238 (34%), Gaps = 23/238 (9%)

Query: 108 DFDYRKITTKHIR----SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163
           +  +   T   +R      ++  K    +  + L++++    + ++   +  +P  ++  
Sbjct: 60  NLPFSLFTKDAVRLYILELMQENKAK-RTIKRRLSAIKSFSHYCLKHRILLEDPTETIHG 118

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRA-GVQ-HL 217
           P+   E   P T E ++   +        G + R   E    SGLR S+           
Sbjct: 119 PRLPKELPSPITYEQVEILMATPDLSKYTGLRDRCLLELFYSSGLRISEIVSLNHWDIDF 178

Query: 218 QNNIFSIKTQKTGTIITVELPDGFMKLL---------AMTPIGKETFFINNDKQKMNATQ 268
            +N+  I+  K      + +     + L         A      +  F+N    ++    
Sbjct: 179 NSNLIRIR-GKGKKERIIPITTLAAQWLKQYLNHPERAGVAKDSQAIFLNCFGTRLTTRS 237

Query: 269 FSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
               F+     +G+  N + H +R   AT   + G     + A  G  +++    YT 
Sbjct: 238 IDRKFQKYLRLSGLSGNITPHTIRHTIATHWLENGMDLKTIQALLGHSSLETTTIYTH 295


>gi|228908344|ref|ZP_04072189.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis IBL 200]
 gi|228851385|gb|EEM96194.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis IBL 200]
          Length = 369

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 47/312 (15%), Positives = 109/312 (34%), Gaps = 38/312 (12%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE 124
               TLK  ++ + +     S+  ++   ++++ +  +I   G     K+   HI+   +
Sbjct: 60  PSKVTLKDYLNHWLEIKS-MSIEKSTFAGYKAFINQHVIPSIGIVALHKLNVIHIQKCYK 118

Query: 125 SRKHTPSSAIQFLTSMRVL---FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
           +      +    L   R+L      AV+Q  ++ NP    E PK++   I+ WT+E++++
Sbjct: 119 TAIDKGIANNSILLMHRILKSALNLAVKQNIISRNPADFAEIPKKEKTPIQTWTEEEVKK 178

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--------------NNIFSIKTQ 227
           F +  S+ S+  + +   + +G+R  +      Q +               +N      +
Sbjct: 179 FLA-HSQESRYHIGYLLAITTGMRLGEVLGLRWQDIDFEKHTVTINQTSGHDNKIKKTAK 237

Query: 228 KTGTIITVELPDGFMKLLAMTPI--------------GKETFFINNDKQKMNATQFSIWF 273
              +  T+ +P+  +  L    I               ++    N   + +    F   F
Sbjct: 238 TNSSKRTIPVPNETIAALKKHKILINKEKLRFGSAYLDQDLINCNEFGRIIKRAHFRKSF 297

Query: 274 KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRL 331
                K G+ +   H +R   AT+    G     +    G   +      Y+       +
Sbjct: 298 IRMTHKVGIKEIKFHDLRHTHATLLLKQGVNPKIISERLGHTDISMTLSVYSHVL--PNM 355

Query: 332 GIKNSRRISSVV 343
             +  +     +
Sbjct: 356 QEEAVKNFGKSI 367


>gi|224372664|ref|YP_002607036.1| phage integrase [Nautilia profundicola AmH]
 gi|223589882|gb|ACM93618.1| phage integrase [Nautilia profundicola AmH]
          Length = 275

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 43/248 (17%), Positives = 87/248 (35%), Gaps = 17/248 (6%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLF 144
             ++ N+  +++    Q           +     I S + S  +   S  + L+S+   F
Sbjct: 16  KGVSKNTYEAYKRDLLQFEEYI-KKPIIEADNMDIISFLSSIGNK-RSLNRKLSSINSFF 73

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM-QQFKSFWSE---GSQPRLAFEFLL 200
            +A +           +++ K      +  TKE++    K+   E     + +    F+ 
Sbjct: 74  DFAYKHGMSDT--KHKIKQAKIPKTLPKFLTKEEILNAIKNIKPEKWFDLRDKSLILFIY 131

Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL----PDGFMKLLAMTPIGKETFF 256
            +GLR S++    +  ++N    +   K      V +     D   + L   P   E  F
Sbjct: 132 ATGLRISEALNTKISDIENGWVKVTMAKGEKQRIVPIAKVALDAIEEYLKKRPCQSEYLF 191

Query: 257 INNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTV 316
           +N D + ++        K       +N S H +R   AT     GA    +    G  ++
Sbjct: 192 VNKDCKPLSRISAFNITKKY-----LNVSPHVLRHSFATALVLGGADLRVVQELLGHSSL 246

Query: 317 DQAETYTK 324
           +  + YT 
Sbjct: 247 NTTQIYTH 254


>gi|94969096|ref|YP_591144.1| phage integrase [Candidatus Koribacter versatilis Ellin345]
 gi|94551146|gb|ABF41070.1| phage integrase [Candidatus Koribacter versatilis Ellin345]
          Length = 359

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 52/331 (15%), Positives = 112/331 (33%), Gaps = 14/331 (4%)

Query: 3   PSLRLPP--FVTKERTRHGKII--YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKR 58
           P  + P    V + + R G+    +  + G  R+ RL      T     ++A      + 
Sbjct: 2   PRRKTPDRDGVYQRKDRPGQFWASWTDQNGKRRQRRLRGVFTLTQAKELLAAAQLRVERI 61

Query: 59  EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH 118
           + +          + + + +                       +    G      I    
Sbjct: 62  KVLGFAEPTKERFEKIEARFLLHQRARLTKAGYERERGVVETHLHDYFGQMQLALIRRGD 121

Query: 119 IRSGVESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
           I + V  R    +P++  + L +++ LF+  V  E + +NP   V+ PK     +R    
Sbjct: 122 IANFVTKRAAEVSPATVAKELVTLKHLFRLCVEWELLVLNPATGVKAPKVAPGRVRWLQP 181

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIIT 234
           E+++       +  +P         +G+R S+        +   N   +++  K      
Sbjct: 182 EELRALLQACPDWLRP--IAGLAAATGMRRSEVLGVRWFDVDRRNGCLTLRQTKNNESRI 239

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFS 293
           V L    + ++     GK +        K+   Q S+ F     + G+ +   H +R   
Sbjct: 240 VFLNQSALHVIDSLRKGKSS---EKLFPKVTPEQVSMGFLRTCRELGIEDFRWHDLRHCF 296

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324
           A++   +GA   ++    G K +   + Y+ 
Sbjct: 297 ASLLRQSGADLQDVAELLGHKDLRMTKRYSH 327


>gi|86139973|ref|ZP_01058538.1| tyrosine recombinase XerD [Roseobacter sp. MED193]
 gi|85823391|gb|EAQ43601.1| tyrosine recombinase XerD [Roseobacter sp. MED193]
          Length = 328

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 94/278 (33%), Gaps = 33/278 (11%)

Query: 88  AVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLTSMRV 142
           A N+ +++              D  + +   + I + +    +   + ++  + L+++R 
Sbjct: 25  ARNTLLAYGRDLKDAASWLAHHDNRFSEAAREDIEAYLISCNAEGLSRATRARRLSALRQ 84

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-------SEGSQPRLA 195
           L+ +A  + + + NP + ++ P R     +     ++ +            ++  +    
Sbjct: 85  LYHFAFEEGWRSDNPAIQIKGPGRAKTLPKTLEVIEVDRLLDAARQTGRKPADRLRNTCL 144

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE- 253
            E L  +G+R S+     V   + +    +   K G    V L     + L    + ++ 
Sbjct: 145 MELLYATGMRVSELMSLPVAAARGDPNMLLVQGKGGKERMVPLSPPAREALRAWLMQRDE 204

Query: 254 -------------TFFINNDKQ--KMNATQFSIWFKAKATKAGVN---KSAHGVRKFSAT 295
                         F   +  +   +    F +  K  A   GV+    + H +R   AT
Sbjct: 205 ADEDSQAKGNPGSKFLFPSRGKEGHLTRHWFYLLIKDLAVTGGVDPKKVTPHTLRHAFAT 264

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
                GA    + A  G   +   E YT   D  RL  
Sbjct: 265 HLLANGADLRAIQALLGHADIATTEIYTHVLD-ARLSE 301


>gi|312174392|emb|CBX82639.1| Tyrosine recombinase xerD [Erwinia amylovora ATCC BAA-2158]
          Length = 346

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 54/309 (17%), Positives = 102/309 (33%), Gaps = 31/309 (10%)

Query: 59  EYINSPRKKPTTLKWLISEY---RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT 115
                P   P +L  L+  +   R+  +W    + ++      F     + G +    IT
Sbjct: 19  RQPAGPAHDPKSLYALLLRFVKWRRERNWSETTLKTQTHHGYRFICWAAERGLYHAADIT 78

Query: 116 TKHIRSGVESR---------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
              +                  T  +    L  ++V F W  +Q  +  NP   +E P+ 
Sbjct: 79  RPVLERYQRWLYQYRKTNGEALTSRTQRTTLQPLQVWFSWMAKQGLILANPAADLELPRL 138

Query: 167 KTEGIRP-WTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGV--QHLQN 219
           +    R   + E +++  +        G + R   E L  +G+R  +  R          
Sbjct: 139 EKHLPRTILSVEQVEEVLNLCDLSTLQGMRDRALLELLWSTGIRRGEVARLETYSADFSR 198

Query: 220 NIFSIKTQKTGTIITVELPDGFMKLLA-----------MTPIGKETFFINNDKQKMNATQ 268
            I +I   K      + + +  +  L            ++P  K  F   +    + A  
Sbjct: 199 KILTIVQGKGKQDRVIPVGERALCWLRHYLHQVRPEVLVSPDCKALFLAMDGVAGLTANG 258

Query: 269 FSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
            +         AG+ K S H  R   AT   + GA    + A  G ++V+  + YT+ + 
Sbjct: 259 ITHAVVPYLRAAGIEKGSCHLFRHAMATQMLENGADLRWIQAMLGHRSVESTQIYTQVSI 318

Query: 328 RIRLGIKNS 336
           R    +  S
Sbjct: 319 RALQAVHAS 327


>gi|15835241|ref|NP_297000.1| site-specific tyrosine recombinase XerC [Chlamydia muridarum Nigg]
 gi|270285413|ref|ZP_06194807.1| site-specific tyrosine recombinase XerC [Chlamydia muridarum Nigg]
 gi|270289427|ref|ZP_06195729.1| site-specific tyrosine recombinase XerC [Chlamydia muridarum Weiss]
 gi|301336810|ref|ZP_07225012.1| site-specific tyrosine recombinase XerC [Chlamydia muridarum
           MopnTet14]
 gi|34223083|sp|Q9PK47|XERC_CHLMU RecName: Full=Tyrosine recombinase xerC
 gi|8163270|gb|AAF73578.1| integrase/recombinase, phage integrase family [Chlamydia muridarum
           Nigg]
          Length = 315

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 81/222 (36%), Gaps = 16/222 (7%)

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           H+  +  + L++++   K+ V+ +++  NP   +  P+   E   P T E +    S   
Sbjct: 83  HSKRTVRRRLSAIKSFAKFCVKNQWIPENPAEMIRGPRLPKELPSPLTYEQVLALMSAPD 142

Query: 188 E----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFM 242
                G + R   E    SGLR S+        +      ++   K      V +    +
Sbjct: 143 LDKVTGFRDRCLLELFYSSGLRISEITALNRSDIDFQSNLLRICGKGKKERIVPMTKVAV 202

Query: 243 KLL---------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRK 291
           + L         A      +  F+N   ++++       F+    K G++ +   H +R 
Sbjct: 203 QWLQAYLDHPDRAAVEQDHQACFLNRFGKRLSTRSIDRKFQQYLLKTGLSGTITPHTIRH 262

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
             AT   + G     +    G  +++    YT  + +++  I
Sbjct: 263 TIATHWLERGMDLKTIQLLLGHTSLETTTIYTHVSMKLKKQI 304


>gi|163735189|ref|ZP_02142625.1| tyrosine recombinase XerD [Roseobacter litoralis Och 149]
 gi|161391647|gb|EDQ15980.1| tyrosine recombinase XerD [Roseobacter litoralis Och 149]
          Length = 323

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 42/284 (14%), Positives = 95/284 (33%), Gaps = 33/284 (11%)

Query: 74  LISEYRKS-AHWGSLAVNSRISFESYFDQI--IRKSGDFDYRKITTKHIRSGV---ESRK 127
            IS + ++ A     A N+ +++              + D+       + + +   ++  
Sbjct: 7   WISAFLEAQAAELGAARNTLLAYGRDLKDFDSFLTHRNLDFHAAAQADVEAYLIACDAEG 66

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            + ++  + L++++ L+++A  + + + NP L +  P R  +  +  ++ ++ +      
Sbjct: 67  LSKATRARRLSAVKQLYRFAFEEGWRSDNPALQITGPGRDRKLPKTLSEAEVDRLLEAAR 126

Query: 188 ---EGSQPRLA----FEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPD 239
                +  R       E L  +G+R ++     V   + +    +   K G    V L  
Sbjct: 127 SSGRNTADRARNTCLMELLYATGMRVTELVSLPVSAARGDPRMLLIRGKGGKERMVPLSP 186

Query: 240 GFMKLLAMT----------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV- 282
                 +                  P  +  +        +   +F +  K  A  AGV 
Sbjct: 187 PARDATSEWLRLRDEKEALKKADGHPPSRFLYASRGVSGHLTRNRFYLLIKELAVDAGVS 246

Query: 283 --NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
               + H +R   AT     GA    +    G   V   E YT 
Sbjct: 247 PSKVTPHTLRHAFATHLLANGADLRSIQTLLGHADVATTEIYTH 290


>gi|319649924|ref|ZP_08004074.1| phage integrase family domain-containing protein [Bacillus sp.
           2_A_57_CT2]
 gi|317398362|gb|EFV79050.1| phage integrase family domain-containing protein [Bacillus sp.
           2_A_57_CT2]
          Length = 304

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 41/282 (14%), Positives = 100/282 (35%), Gaps = 30/282 (10%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESY---FDQIIRKSGDFDYRKITTKHIRSGV---E 124
           LK+ I ++     + ++  N+  S++      +  + ++   + +++T  HI+  +   +
Sbjct: 2   LKFAIQDFLDDREFKNVTPNTLESYKLIIGQLNDFLTENEVVNVQEVTPNHIKKFILHYQ 61

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
            + +  ++    L  +R  F + +  E +  NP   +++ K   + I  +T   ++Q  +
Sbjct: 62  KKGNNATTTNSKLQRIRAFFNYMIECEIITQNPAKKIKKAKEDIK-IDVFTDYHIKQMLN 120

Query: 185 FWSE---------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIIT 234
           ++             +       L+ +G+R S+        +     ++    K     T
Sbjct: 121 YYRRIKQREKAFYAYRDHSIIVILIGTGIRLSEMTALKWSDVDFQNHTLSVFGKNRKRET 180

Query: 235 VELPDGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATK---AG 281
           + + +  +K L+   +  E F          F N   + +        FK  +       
Sbjct: 181 MPITEKVVKELSAYKVYCEQFFGKENLHENIFTNRSSEPLTPDAVKNIFKRLSKIMNFKD 240

Query: 282 VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           V  SAH  R         AG +   +       ++   E Y 
Sbjct: 241 VRLSAHTFRHTFCQRCIHAGMSTFAVQRLMRHSSIAVTEKYA 282


>gi|256847174|ref|ZP_05552620.1| tyrosine recombinase XerC [Lactobacillus coleohominis 101-4-CHN]
 gi|256715838|gb|EEU30813.1| tyrosine recombinase XerC [Lactobacillus coleohominis 101-4-CHN]
          Length = 312

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 38/280 (13%), Positives = 82/280 (29%), Gaps = 28/280 (10%)

Query: 85  GSLAVNSRISFESYFDQIIRKS-------GDFDYRKITTKHIRSGVESRKHTPSSAIQFL 137
             LA  +   +E+      +         G    ++   +   + +   +   ++  + L
Sbjct: 21  RQLAATTVQGYENDLRMFRKFLTAKKHWLGWLKIKRQDIQAYLTHLNDLRRQWTTINREL 80

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-----SEGSQP 192
            S+R  + + +    V  NP   V          R + + +M                + 
Sbjct: 81  ASLRTFYNFLLTNGLVVANPFDEVRMKHHSRSLPRYFYEPEMNALFKAADGDGRPLDFRN 140

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVE------------LPD 239
           R   E L  +G+R S+     ++ +  +    +   K      V             L +
Sbjct: 141 RAIIELLYATGMRVSECASLSLEQINWDVQMILVHGKGDKERYVPFGHYAKVALERYLHE 200

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK--AGVNKSAHGVRKFSATIS 297
               L+          FIN+  + + +            K    ++   H +R   AT  
Sbjct: 201 CREPLMDKYHEEHRRVFINHYGKPITSEGIEYVLNQVVKKSSLNIHIHPHMLRHSFATAM 260

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
            + GA    +    G  ++   + YT    R  L     +
Sbjct: 261 LNNGADIRSVQELLGHSSLSTTQIYTH-VTRENLQKTYMK 299


>gi|260433976|ref|ZP_05787947.1| tyrosine recombinase XerD [Silicibacter lacuscaerulensis ITI-1157]
 gi|260417804|gb|EEX11063.1| tyrosine recombinase XerD [Silicibacter lacuscaerulensis ITI-1157]
          Length = 316

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 44/295 (14%), Positives = 99/295 (33%), Gaps = 33/295 (11%)

Query: 68  PTTLKWLISEYRKS-AHWGSLAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRS 121
           P T +  IS + ++ A     A N+ +++               +G     +   +    
Sbjct: 4   PETPELWISAFLEAQAAELGAATNTLLAYGRDLKDFAGWLSRHGAGFAQADQARIEAYLI 63

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
             +++  + ++  + L++++ L+++A  + +   NP + ++ P R+    +     ++ +
Sbjct: 64  DCDAQGLSRATRARRLSAIKQLYRFAFEEGWRDTNPAIQIKGPGRQKRLPKTLDVAEVDR 123

Query: 182 FKSFW-------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTII 233
                       ++  +     E L  +G+R ++     V   + +    +   K G   
Sbjct: 124 LLQAARQTGRTQADRLRNTCLMELLYATGMRVTELVSLPVSAARGDPRMLLVLGKGGKER 183

Query: 234 TVELPDGFMKLLAMTPIGKET--------------FFINNDKQ--KMNATQFSIWFKAKA 277
            V L       LA     ++               F   +  +   +   +F +  K  A
Sbjct: 184 MVPLSPPARDALAAWLGARDAVEEASVAKGGQRSRFLFPSRGKSGHLTRHRFFLLVKELA 243

Query: 278 TKAGV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              GV     + H +R   AT     GA    +    G   V   E YT   D  
Sbjct: 244 VCGGVSPEKVTPHTLRHAFATHLLANGADLRSIQTLLGHADVATTEIYTHVLDER 298


>gi|317046395|ref|YP_004114043.1| tyrosine recombinase XerC [Pantoea sp. At-9b]
 gi|316948012|gb|ADU67487.1| tyrosine recombinase XerC [Pantoea sp. At-9b]
          Length = 302

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 40/259 (15%), Positives = 83/259 (32%), Gaps = 19/259 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYR-----KITTKHIRSGVESRKH-TPSSAIQFLT 138
             L+  ++ ++      II  + +         +       +    R     SS    L+
Sbjct: 22  RQLSPLTQQNYARQLQAIITMADEMKITAWTQLEPAQVRNIAARSRRAGLGASSLALRLS 81

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLA 195
           ++R    W V Q+ ++ NP   +  P+      +    +++ Q            + R  
Sbjct: 82  ALRSFLDWQVSQDMLSGNPAKGIATPRNARHLPKNMDVDEVNQLLEIDLNDPLAVRDRAM 141

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVEL-------PDGFMKLLAM 247
            E +   GLR S+     ++HL           K      V +          ++ L A 
Sbjct: 142 LETMYGGGLRLSELVNMDLRHLDLEAGEVWVLGKGSKERRVPIGGTAVTWLQHWLPLRAS 201

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAH 305
                +  F+++   +++A      F     K GV  +   H +R   AT   ++     
Sbjct: 202 FAPQDDAVFVSSRGSRISARNVQKRFAEWGIKQGVASHIHPHKLRHSFATHLLESSGDLR 261

Query: 306 ELMATYGWKTVDQAETYTK 324
            +    G   +   + YT 
Sbjct: 262 AVQELLGHANLSTTQIYTH 280


>gi|319788822|ref|YP_004090137.1| integrase family protein [Ruminococcus albus 7]
 gi|315450689|gb|ADU24251.1| integrase family protein [Ruminococcus albus 7]
          Length = 359

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 57/347 (16%), Positives = 119/347 (34%), Gaps = 42/347 (12%)

Query: 24  YFRKGHGRRIRLPYPHESTFIPAYMS---ALTGSTPKREYINSPRKKPT------TLKWL 74
           Y RK      R+    +      Y S   A      ++  +      P       T+  L
Sbjct: 7   YARKDGRYEGRVYLGKDENGKRRYKSYYGATAEEVRRKHELTQFSAVPNIPASKMTIATL 66

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR---KHTP 130
            +E+  S     +  ++  ++       II   G  +   + +K I   + ++     + 
Sbjct: 67  AAEWLLSVQ-NRVKESTLENYRLKLKKHIIPSFGAMNCCAVGSKEIYGFMNAKIGNGLSS 125

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-G 189
                 L  M+ +FK+A  +EY   N    +  PK++++ +R  TK++  + KS+ +E  
Sbjct: 126 RYVSDILVLMKSMFKYAA-REYGFKNVFDGITMPKKQSKEVRLLTKDEENKLKSYITEKP 184

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-------------------- 229
           +   +     +Y+GLR  + C      +  +  ++  +KT                    
Sbjct: 185 TLAGMGIALTMYTGLRVGELCALTWADIDLDYRTLTVKKTMQRIQNHEGGGKTKLIISEP 244

Query: 230 ---GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-S 285
               +   + +P+  +++L         F +    + M        F     K G+    
Sbjct: 245 KSEKSRRIIPIPECMIEMLRSFKADDGCFLLTGKDKPMEPRAMQYRFSRLLKKLGLPHIH 304

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKG-ADRIR 330
            H +R   A+ + + G     L    G  +V+     Y     +R R
Sbjct: 305 YHALRHGWASRAIELGFDVKTLSEILGHSSVELTMRLYVHSNFERKR 351


>gi|118617318|ref|YP_905650.1| site-specific tyrosine recombinase XerD [Mycobacterium ulcerans
           Agy99]
 gi|118569428|gb|ABL04179.1| integrase/recombinase, XerD [Mycobacterium ulcerans Agy99]
          Length = 313

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 45/274 (16%), Positives = 86/274 (31%), Gaps = 35/274 (12%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH----IRSGVESRKHTPSS-------- 132
             +A N+  S+     +  +   D     +            V  R+  P S        
Sbjct: 21  RGVAANTLSSYRRDLRRYSKHLEDRGITDLAKVGEDDVSEFLVALRRGDPESGVLGLSAV 80

Query: 133 -AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----- 186
            A + L ++R L ++A  +   A++   +V  P       +  T +++            
Sbjct: 81  SAARALIAVRGLHRFAAAEGLAALDVARAVRPPTPGRRLPKSLTIDEVLALLEGAGGDNP 140

Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFM 242
                  + R   E L  +G R S++    V  +       +   K G    V +    +
Sbjct: 141 ADGPLTLRNRALLELLYSTGSRISEAVGLDVDDIDTQARTVLLQGKGGKQRLVPVGRPAV 200

Query: 243 KLL-----------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGV 289
           + L           A    G    F+N    +++        +  A +A +    S H +
Sbjct: 201 QALDAYLVRGRPELARRGRGTPAIFLNARGGRLSRQSAWQVLQDAAERADITSGVSPHML 260

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           R   AT   + GA    +    G  +V   + YT
Sbjct: 261 RHSFATHLLEGGADVRVVQELLGHASVTTTQIYT 294


>gi|56416387|ref|YP_153461.1| integrase/recombinase [Anaplasma marginale str. St. Maries]
 gi|56387619|gb|AAV86206.1| integrase/recombinase [Anaplasma marginale str. St. Maries]
          Length = 312

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 43/283 (15%), Positives = 103/283 (36%), Gaps = 34/283 (12%)

Query: 87  LAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVESRKHTPSSAIQFLTSMR 141
           ++ N+  S+ S  + +    G  + R +       +     + SR ++P++  + ++++R
Sbjct: 20  VSPNTSSSYRSDLEDLAEFLGRRNLRMVDASAADLRAYVRSLNSRGYSPATVARRISAIR 79

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK-----SFWSEGSQPRLAF 196
            L+ +      +  +P  +++  K      +  T +++ +           EG +     
Sbjct: 80  GLYGFLYGDRIIDGDPAANLDSCKLGRPLPKVLTVDEVDKLLCAAGSDLSVEGRRTAAIV 139

Query: 197 EFLLYSGLRCSDSCRAGVQHLQ--------NNIFSIKTQKTGTIITVELPDGFMKLLAMT 248
             L  SG+R S+    G   ++        +    +   K G    + L +  +  +   
Sbjct: 140 NILYSSGVRISELINLGFYDIESMLKEQRSDVGHLVIKGKAGRERLILLNEVAIASIVAY 199

Query: 249 PIGKETFFINNDKQKM------------NATQFSIWFKAKATKAGVN---KSAHGVRKFS 293
              ++ F +    +              +  +     KA A  AGV+    S H +R   
Sbjct: 200 LAVRDHFIVGQKSESRWLFPGAKFDQCISRQRVGQLLKALAIVAGVDPKRISPHKLRHSF 259

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKN 335
           AT   + G+    +    G  ++   + YT  A DR++  ++ 
Sbjct: 260 ATHLLNNGSNVVFIQKMLGHASLSTTQIYTYVANDRLKEALQT 302


>gi|229079787|ref|ZP_04212320.1| DNA integration/recombination/invertion protein [Bacillus cereus
           Rock4-2]
 gi|228703627|gb|EEL56080.1| DNA integration/recombination/invertion protein [Bacillus cereus
           Rock4-2]
          Length = 369

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 47/312 (15%), Positives = 109/312 (34%), Gaps = 38/312 (12%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE 124
               TLK  ++ + +     S+  ++   ++++ +  +I   G     K+   HI+   +
Sbjct: 60  PSKVTLKDYLNHWLEIKS-MSIEKSTFAGYKAFINQHVIPSIGMVALHKLNVIHIQKCYK 118

Query: 125 SRKHTPSSAIQFLTSMRVL---FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
           +      +    L   R+L      AV+Q  ++ NP    E PK++   I+ WT+E++++
Sbjct: 119 TAIDKGIANNSILLMHRILKSALNLAVKQNIISRNPADFAEIPKKEKTPIQTWTEEEVKK 178

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--------------NNIFSIKTQ 227
           F +  S+ S+  + +   + +G+R  +      Q +               +N      +
Sbjct: 179 FLA-HSQESRYHIGYLLAITTGMRLGEVLGLRWQDIDFEKHTVTINQTSGHDNKIKQTAK 237

Query: 228 KTGTIITVELPDGFMKLLAMTPI--------------GKETFFINNDKQKMNATQFSIWF 273
              +  T+ +P+  +  L    I               ++    N   + +    F   F
Sbjct: 238 TNSSKRTIPVPNETIAALKKHKILINKEKLRFGSAYLDQDLINCNEFGRIIKRAHFRKSF 297

Query: 274 KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRL 331
                K G+ +   H +R   AT+    G     +    G   +      Y+       +
Sbjct: 298 IRMTHKVGIKEIKFHDLRHTHATLLLKQGVNPKIISERLGHTDISMTLSVYSHVL--PNM 355

Query: 332 GIKNSRRISSVV 343
             +  +     +
Sbjct: 356 QEEAVKNFGKSI 367


>gi|157803898|ref|YP_001492447.1| site-specific tyrosine recombinase XerD [Rickettsia canadensis str.
           McKiel]
 gi|157785161|gb|ABV73662.1| tyrosine recombinase [Rickettsia canadensis str. McKiel]
          Length = 308

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 52/286 (18%), Positives = 108/286 (37%), Gaps = 38/286 (13%)

Query: 75  ISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRK--ITTKHIRSGVESRKHT-- 129
           IS++ +      +L+ NS  S++                +  ITT++IR+ +E       
Sbjct: 4   ISQFLEMLLAERALSKNSIFSYKRDLFDFQNYLAKQKLSELNITTENIRNWIEYLADNDL 63

Query: 130 -PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-- 186
              S  + +++++  +++ + + + A NP L+V+ PK +++     + + ++    +   
Sbjct: 64  QARSINRKISTIKSYYEFLISENHTAFNPVLNVDLPKYQSKLPEILSIDQIKSLLEYCSQ 123

Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK--------TGTIITV 235
               EG +       L  SGLR S+     +  +  N  S + +K            + +
Sbjct: 124 DATPEGIRLNAMIHLLYASGLRVSELVSLKLADILTNKMSGEVKKVFSVLGKGNKERVII 183

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQK--------------MNATQFSIWFKAKATKAG 281
                 + ++    I     F+N  K K              M    F++  K+ A  AG
Sbjct: 184 INEQAVISIVKYLAIRD--VFLNKAKPKNLIYLFPSSAIAGYMTRQNFAMLLKSAALYAG 241

Query: 282 VN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +N    S H +R   A+   + GA    +    G   +   + YT 
Sbjct: 242 LNPKHISPHILRHSFASHLLEGGADLRVIQELLGHADISTTQIYTH 287


>gi|109900374|ref|YP_663629.1| phage integrase [Pseudoalteromonas atlantica T6c]
 gi|109702655|gb|ABG42575.1| tyrosine recombinase XerC subunit [Pseudoalteromonas atlantica T6c]
          Length = 298

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 43/272 (15%), Positives = 104/272 (38%), Gaps = 17/272 (6%)

Query: 70  TLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE---S 125
           +L+ L+ +Y     +  +LA  S  +++     I +      + ++T  H+R  +     
Sbjct: 6   SLQPLLGKYFDYLKYERNLAAKSIENYQRQLASICQALTITAWPELTVDHVRQVLNQARR 65

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ---F 182
           +  +P S    L+++R    + V  E ++ NP  +V+ PK+ +   +    ++M Q   F
Sbjct: 66  QGLSPRSIALRLSALRGYCAYLVELEVLSSNPAKAVQAPKQGSPLPKQLNVDEMHQLLDF 125

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE------ 236
                 G + +   E     GLR ++     ++ LQ++       K      +       
Sbjct: 126 DDDSLLGVRDKAMLELTYSCGLRLAELADLNLKSLQDDGQLRVIGKGSKERILPVGKTAL 185

Query: 237 --LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKF 292
             L +       +    +   F++  +++++  Q +   +  A +  +++    H +R  
Sbjct: 186 KCLGEWLKVRGVLADGDEPALFLSKHRRRISHRQIAKRMQLWAKQQHLDQDINPHKLRHS 245

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324
            AT   ++      +    G   +   + YT 
Sbjct: 246 FATHILESSGDLRGVQELLGHANLSTTQVYTH 277


>gi|261250028|ref|ZP_05942605.1| tyrosine recombinase XerC [Vibrio orientalis CIP 102891]
 gi|260939532|gb|EEX95517.1| tyrosine recombinase XerC [Vibrio orientalis CIP 102891]
          Length = 310

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 42/268 (15%), Positives = 99/268 (36%), Gaps = 22/268 (8%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGV---ESRKHTP 130
           EY +S     L+++++ +++   + +   + + G  +++++    +R            P
Sbjct: 21  EYLRSE--KGLSLHTQRNYKQQLETMAGHLAQLGLKEWQQVDAGWVRQLASKGMREGMKP 78

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WS 187
           SS    L+S+R  F + + +  ++ NP   V  P++K    +    +++ Q         
Sbjct: 79  SSLATRLSSLRSFFDFMMLRGEMSANPAKGVSAPRKKRPLPKNLDVDEIGQLLEVNEDDP 138

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELP----DGFM 242
              + R   E +  +GLR ++     V+ +  +   I+   K      V       +   
Sbjct: 139 LAIRDRAMMELMYGAGLRLAELVSINVKDVGLSSGEIRVVGKGDKERKVPFTGMAAEWVS 198

Query: 243 KLLAMTPI----GKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATI 296
           K L + P      +   F++    +++             K  V  + S H +R   AT 
Sbjct: 199 KWLRVRPSLANSDELGLFVSKLGVRISHRNVQKRMAEWGQKQAVASHISPHKLRHSFATH 258

Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324
             ++      +    G + +   + YT 
Sbjct: 259 MLESSNNLRAVQELLGHENISTTQIYTH 286


>gi|228961935|ref|ZP_04123475.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis serovar pakistani str. T13001]
 gi|228797758|gb|EEM44831.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis serovar pakistani str. T13001]
          Length = 369

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 47/312 (15%), Positives = 109/312 (34%), Gaps = 38/312 (12%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE 124
               TLK  ++ + +     S+  ++   ++++ +  +I   G     K+   HI+   +
Sbjct: 60  PSKVTLKDYLNHWLEIKS-MSIEKSTFAGYKAFINQHVIPSIGMVTLHKLNVIHIQKCYK 118

Query: 125 SRKHTPSSAIQFLTSMRVL---FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
           +      +    L   R+L      AV+Q  ++ NP    E PK++   I+ WT+E++++
Sbjct: 119 TAIDKGIANNSILLMHRILKSALNLAVKQNIISRNPADFAEIPKKEKTPIQTWTEEEVKK 178

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--------------NNIFSIKTQ 227
           F +  S+ S+  + +   + +G+R  +      Q +               +N      +
Sbjct: 179 FLA-HSQESRYHIGYLLAITTGMRLGEVLGLRWQDIDFEKHTVTINQTSGHDNKIKKTAK 237

Query: 228 KTGTIITVELPDGFMKLLAMTPI--------------GKETFFINNDKQKMNATQFSIWF 273
              +  T+ +P+  +  L    I               ++    N   + +    F   F
Sbjct: 238 TNSSKRTIPVPNETIAALKKHKILINKEKLKFGSAYLDQDLINCNEFGRIIKRAHFRKSF 297

Query: 274 KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRL 331
                K G+ +   H +R   AT+    G     +    G   +      Y+       +
Sbjct: 298 IRMTHKVGIKEIKFHDLRHTHATLLLKQGVNPKIISERLGHTDISMTLSVYSHVL--PNM 355

Query: 332 GIKNSRRISSVV 343
             +  +     +
Sbjct: 356 QEEAVKNFGKSI 367


>gi|323143371|ref|ZP_08078059.1| phage integrase, N-terminal SAM-like domain [Succinatimonas hippei
           YIT 12066]
 gi|322416889|gb|EFY07535.1| phage integrase, N-terminal SAM-like domain [Succinatimonas hippei
           YIT 12066]
          Length = 297

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 51/239 (21%), Positives = 87/239 (36%), Gaps = 22/239 (9%)

Query: 109 FDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
            +  K ++K I   + S K      S  +FL SMR    +   + Y   +P   ++ PK 
Sbjct: 45  VEPAKFSSKDIEGFLASAKDRLSARSTARFLCSMRAFSAFLKLENYRDDDPLSLIDNPKL 104

Query: 167 KTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNN 220
                +  ++  + +F +        G + R  FE +   GLR S+         +L + 
Sbjct: 105 PQSLPKIMSEATVDEFINAITTDTDVGLRDRAMFETVYSCGLRVSELVNLTFDSLNLVDG 164

Query: 221 IFSIKTQKTGTIITVELPD----GFMKLLAMTPIGKE------TFFINNDK-QKMNATQF 269
              I+  K      V L D       + LA   I K+        F++      ++   F
Sbjct: 165 YLIIR-GKGDKERLVPLGDNAVWWIKRYLAEGRISKDPKNQCPYVFLSGKGVGPLSREGF 223

Query: 270 SIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
               K  A+K G++K  S H  R   AT   +  A    +    G  ++   + YT  A
Sbjct: 224 WYRVKYYASKIGLSKAPSPHTFRHAFATHLLNHDADLRSVQLLLGHSSLTTTQIYTHVA 282


>gi|239631511|ref|ZP_04674542.1| tyrosine recombinase XerC subunit [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|239525976|gb|EEQ64977.1| tyrosine recombinase XerC subunit [Lactobacillus paracasei subsp.
           paracasei 8700:2]
          Length = 298

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 43/268 (16%), Positives = 93/268 (34%), Gaps = 30/268 (11%)

Query: 85  GSLAVNSRISFESYFDQ----IIRKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFL 137
              +  +  ++ S   +    +    G  D+R +    +++ +     +    +S  + +
Sbjct: 15  RQYSPETVTAYLSDLQEFQAFLKANGGFTDFRHVDDLDVQTYLTDLNKQDLARTSIARKI 74

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FWSEGSQPR 193
           +S+R  +++  R + V  NP   VE  K+     + + + ++Q+             + R
Sbjct: 75  SSLRSFYRYLTRIDVVKSNPFELVELKKQHHHLPQFFYEAEIQELFKTVAGKTPLDQRNR 134

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVE------------LPDG 240
              E L  +G+R S+  +  +  +  N    +   K      V             L DG
Sbjct: 135 ALLEVLYGTGIRVSECAKLTLNQVDFNTALLLIHGKGNKDRYVPFGQYAQQALRTYLKDG 194

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQ----FSIWFKAKATKAGVNKSAHGVRKFSATI 296
              L+A +       F+N   + + +           K     A ++   H +R   AT 
Sbjct: 195 RQVLMAKSQAQHRYVFVNQYGRPITSRGIEYILDQLIKQTTLTANIH--PHMLRHSFATH 252

Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324
             D GA    +    G  ++   + YT 
Sbjct: 253 MLDHGADLRTVQELLGHASLSTTQIYTH 280


>gi|71275345|ref|ZP_00651631.1| Phage integrase [Xylella fastidiosa Dixon]
 gi|71901026|ref|ZP_00683137.1| Phage integrase [Xylella fastidiosa Ann-1]
 gi|71163645|gb|EAO13361.1| Phage integrase [Xylella fastidiosa Dixon]
 gi|71729212|gb|EAO31332.1| Phage integrase [Xylella fastidiosa Ann-1]
          Length = 339

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 62/333 (18%), Positives = 113/333 (33%), Gaps = 28/333 (8%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
           +P F  + + + G + YY+  G   R   P          Y  A+     + E+      
Sbjct: 11  IPRFRVRPQ-KSGVVYYYYDHGGKPRKETPLG------RDYGLAI-KRWAELEHAQITPA 62

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVE 124
              T + +   YR      + A N++         +++   D    +  I   +IR  ++
Sbjct: 63  IAVTFRHVAERYRAEVI-PTKAYNTQRVEHRCLAPLLKFFDDPPAPFEAIKPVNIRQYLD 121

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVA-INPCLSVERPKRKTEGIRPWTKEDMQQFK 183
            R      A + ++    L+ WA  +      NPC  + R K     +      D   ++
Sbjct: 122 WRTSKV-IANREVSVFSHLWNWARSKGITDLPNPCGGIRRNKATGRDVYV----DDTTYR 176

Query: 184 SFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
           + +    Q  R A +    +G R SD      +H+ N    I   KTG  + + +     
Sbjct: 177 AVYQAADQTLRDAMDLAYLTGQRVSDVVSMDERHIVNGALEICQAKTGAKLAITVTGELA 236

Query: 243 KLLAMTPIGKE-------TFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKF 292
            L+      K           ++    +++ T     F    T AG+ K       +R  
Sbjct: 237 VLIKRIFDRKRGMKLRSTRLIVDAKGLELSRTGLRYRFDRARTAAGIAKEVFQFRDLRAK 296

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKG 325
           +AT  AD      +  A  G  +V   E Y + 
Sbjct: 297 AATDKADLAGDIRQAQAQLGHASVTMTEHYVRK 329


>gi|319778943|ref|YP_004129856.1| Tyrosine recombinase XerC [Taylorella equigenitalis MCE9]
 gi|317108967|gb|ADU91713.1| Tyrosine recombinase XerC [Taylorella equigenitalis MCE9]
          Length = 315

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 46/290 (15%), Positives = 100/290 (34%), Gaps = 40/290 (13%)

Query: 74  LISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV---ESRKHT 129
            + ++ +S     + + ++  +++     +I    + D  K+    +R  +    SR   
Sbjct: 4   YVEQWLQSLVTEKNSSPHTVAAYKRDLQHLIDIFPEKDLSKLNNMDVRQAIATLHSRDFN 63

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---- 185
           P S  + L+S R  +KW   +  + INP L ++ PK      +  T ++ +         
Sbjct: 64  PRSLTRILSSWRNFYKWYSLKYELDINPTLGIKAPKVARPLPKALTADEAKLLLDVGLQT 123

Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRA-------------GVQHLQNNIFSIKTQKT 229
               +  ++ +  FE L  SGLR S+                 G   + N+  ++   K 
Sbjct: 124 DDNSAVHARDQAMFELLYSSGLRLSELVNLDIEYHKSQDHVSKGWLDINNHELTVI-GKG 182

Query: 230 GTIITVELPDGFMKLL-------------AMTPIGKETFFINNDKQKMNATQFSIWFKAK 276
                V L +   + +               +   K   F+    ++++     +  K  
Sbjct: 183 NKPRIVPLGEKAEEAILHWLNRRIELEGPKTSASDKCALFLGAQGKRISTRVVQLQLKKL 242

Query: 277 ATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           A K  +  N   H +R   A+    +      +    G   +   + YT+
Sbjct: 243 ALKTNIPSNIHPHVLRHSFASHILQSSQDLRAVQDLLGHSKISTTQLYTR 292


>gi|149202773|ref|ZP_01879745.1| tyrosine recombinase XerD [Roseovarius sp. TM1035]
 gi|149144055|gb|EDM32089.1| tyrosine recombinase XerD [Roseovarius sp. TM1035]
          Length = 323

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 41/300 (13%), Positives = 90/300 (30%), Gaps = 41/300 (13%)

Query: 88  AVNSRISFESYFDQIIRKSGDF-----DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRV 142
           A N+ +++            +         +          +++    ++  + L+++R 
Sbjct: 22  AKNTLLAYARDLKDFSEWVENQGLALQTLTQPDIDRYLVFCDAQGLARATRARRLSAIRQ 81

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG-------SQPRLA 195
           L+++A  +   A NP + ++ P +     +  ++E++ +               S+    
Sbjct: 82  LYRFAFDERLRADNPAIRIKGPGKAQRLPKTLSEEEVSRLLDMAPAHGRTASERSRNACL 141

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKLL--------- 245
              L  +G+R S+     +   + +    +   K G    V L       L         
Sbjct: 142 VALLYATGMRVSELVSLPLGAARGDPRMILVRGKGGKERMVPLSPPARAALSDWLAIRDA 201

Query: 246 -----AMTPIGKETFFINNDK--QKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSAT 295
                    +    +   +      +   +F    K  + KA V+    + H +R   AT
Sbjct: 202 EESARRAKGVQSSPYLFASGGASGHLTRHRFYNLIKEISVKAHVDPDKVTPHTLRHAFAT 261

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIR---------LGIKNSRRISSVVDSD 346
                GA    +    G   V   E YT   +            L     R+      SD
Sbjct: 262 HLLANGADLRVIQTLLGHADVATTEIYTHVLEARLQALVQEHHPLAQAARRKTGGKTSSD 321


>gi|300934030|ref|ZP_07149286.1| integrase/recombinase [Corynebacterium resistens DSM 45100]
          Length = 276

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 52/263 (19%), Positives = 89/263 (33%), Gaps = 27/263 (10%)

Query: 95  FESYFDQIIRKSGDFDYRKITTKHIRSGV--------ESRKHTPSSAIQFLTSMRVLFKW 146
           ++   D+     G+ +   +T+  I   +          +    SSA + L S+R L  +
Sbjct: 4   YQRDIDRYQEWLGEREIADVTSNDIEQHLVWLQNDEPGHKGIARSSAARALASIRSLHDF 63

Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS-------QPRLAFEFL 199
             R++ +  N  ++V  PKR +   +  T E +          +       + R   E L
Sbjct: 64  GEREKLLPSNVAVTVPVPKRGSSIPKALTVEQVSSLLDATPNDAAASLVDIRDRAVLEML 123

Query: 200 LYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLL-----AMTPI--- 250
             +G R S+     V  +       +   K      V L     + L        P    
Sbjct: 124 YSTGARISELLALDVDDVDQGERMVLVRGKGAKERLVPLGSPASEALEQYVVRARPAMNK 183

Query: 251 -GKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELM 308
            G    F+N    +M            A +AG+   + H +R   AT     GA    + 
Sbjct: 184 KGSPALFLNMRGGRMGRQSGFKTVMQAAERAGLPPVNPHALRHSFATHLLQGGADVRVVQ 243

Query: 309 ATYGWKTVDQAETYTK-GADRIR 330
              G  +V   + YTK  AD +R
Sbjct: 244 ELLGHSSVATTQIYTKVTADHLR 266


>gi|261880904|ref|ZP_06007331.1| tyrosine recombinase XerD [Prevotella bergensis DSM 17361]
 gi|270332412|gb|EFA43198.1| tyrosine recombinase XerD [Prevotella bergensis DSM 17361]
          Length = 292

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 46/278 (16%), Positives = 97/278 (34%), Gaps = 30/278 (10%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQI----IRKSGDFDYRKITTKHIRSGVE---S 125
           +I ++     +    +  +  S+              +G   +  + +  IR  +E    
Sbjct: 1   MIEKFLNYLQFELCRSPLTVESYRRDLQAFEVFFRNLNGQLSWESVDSDVIRDWMEGMMD 60

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           R +  +S  + L+++R L+++A+  + VA +P   ++ PK++    +   + +M +    
Sbjct: 61  RGNNAASVNRRLSALRSLYRFALSHQLVARDPARCIDGPKKQKPLPQFLKENEMDRLLDD 120

Query: 186 WSEGS-----QPRLAFEFLLYSGLRCSDSCRA--GVQHLQNNIFSIKTQKTGTIITVELP 238
              GS     + +        +G+R S+            N+   + T K      +   
Sbjct: 121 MEWGSGYKDVRAKTIITTFYETGIRLSELVGLDDESADFHNHQLKV-TGKGNKQRIIPFG 179

Query: 239 DGFMKLL--------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV----NKSA 286
           D   K L                  F+  +  +M      +  + KA  A V      + 
Sbjct: 180 DELEKTLRWFVETRNREVERTGNALFVTEEGVRMT--SQQVRQEVKARLAQVCTLKKLTP 237

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           H +R   AT   + GA    +    G ++V   E YT 
Sbjct: 238 HVLRHTFATTMLNHGAGLESVKRLLGHESVSTTEIYTH 275


>gi|84516057|ref|ZP_01003417.1| tyrosine recombinase XerD [Loktanella vestfoldensis SKA53]
 gi|84509753|gb|EAQ06210.1| tyrosine recombinase XerD [Loktanella vestfoldensis SKA53]
          Length = 306

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 44/273 (16%), Positives = 91/273 (33%), Gaps = 29/273 (10%)

Query: 86  SLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGV---ESRKHTPSSAIQFLTSM 140
             A N+++++                 + ++T   I S +    +     S+  + L+++
Sbjct: 17  DAATNTQLAYARDLQGFAEWLASRGLHFMQVTQDQIESYLIDCAADGLAKSTRARRLSAI 76

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KSFWSEGSQPRLAF 196
           + LF++A  + + A NP L ++ P R     +     ++ +     ++   +G +     
Sbjct: 77  KQLFRFAYDEGWRADNPALQIKGPGRAQRLPKTLDLAEVDRLLDAARASPRDGLRNGCLM 136

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGF-------------- 241
           E L  +G+R S+     V   + +    +   K G    V L                  
Sbjct: 137 ELLYATGMRVSELVSLPVSAARGDPRMLLVRGKGGKERLVPLSPPARAAMAAWLAARDAA 196

Query: 242 MKLLAMTPIGKETFFINNDKQ--KMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATI 296
            ++          F   +  +   +    F    K  A  AG+     + H +R   AT 
Sbjct: 197 QEVAQKAGKPASKFLFPSHGKAGHLTRHAFFGLIKGFAVTAGLSPERVTPHVLRHAFATH 256

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRI 329
               GA    +    G   +   E YT   D+ 
Sbjct: 257 LLAGGADLRSIQTMLGHADIATTEIYTHVLDQR 289


>gi|157964440|ref|YP_001499264.1| site-specific tyrosine recombinase XerD [Rickettsia massiliae MTU5]
 gi|157844216|gb|ABV84717.1| Tyrosine recombinase XerD [Rickettsia massiliae MTU5]
          Length = 306

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 50/287 (17%), Positives = 104/287 (36%), Gaps = 39/287 (13%)

Query: 75  ISEYRKSA-HWGSLAVNSRISFESYF----DQII-RKSGDFDYRKITTKHIRSGVESRKH 128
           IS++ +      +L+ NS +S++       + +  +K  + +      +     + S   
Sbjct: 4   ISQFLEMLLAERALSKNSILSYKRDLFDFHNYLATQKLSELNITTENIRDWIEYLASNDL 63

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-- 186
              S  + +++++  +K+ + + + A NP L+V+ PK + +     + + ++        
Sbjct: 64  QARSINRKISTIKSYYKFLISENHTAFNPVLNVDLPKYQNKLPEILSIDQIKSLLEHCSQ 123

Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN---------IFSIKTQKTGTIIT 234
               EG +       L  SG R S+     +  +  N         IFS+  +     + 
Sbjct: 124 DNSPEGIRLNAMIHLLYASGFRVSELVSLKLADILTNKTSKGEVRKIFSVLGKGNKERVI 183

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQK--------------MNATQFSIWFKAKATKA 280
           V      + +     I     F+N  K +              M    F+I  K+ A  A
Sbjct: 184 VINEQAVISIAKYLAIRD--VFVNKAKPRNLIYLFPSSALAGYMTRQNFAILLKSAALYA 241

Query: 281 GVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           G+N    S H +R   A+   + GA    +    G   +   + YT 
Sbjct: 242 GLNPEHISPHILRHSFASHLLEGGADLRVIQELLGHADISTTQIYTH 288


>gi|157828362|ref|YP_001494604.1| site-specific tyrosine recombinase XerD [Rickettsia rickettsii str.
           'Sheila Smith']
 gi|165933070|ref|YP_001649859.1| site-specific tyrosine recombinase XerD [Rickettsia rickettsii str.
           Iowa]
 gi|157800843|gb|ABV76096.1| tyrosine recombinase [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165908157|gb|ABY72453.1| integrase/recombinase (XerD/RipX family) [Rickettsia rickettsii
           str. Iowa]
          Length = 306

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 48/276 (17%), Positives = 99/276 (35%), Gaps = 38/276 (13%)

Query: 85  GSLAVNSRISFESYF----DQIIR-KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
            +L+ NS +S++       + + + K  + +      +     + S      S  + +++
Sbjct: 15  RALSKNSILSYKRDLFDFQNYLAKHKLSELNITTENIRDWIEYLASNDLQARSINRKIST 74

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-----SEGSQPRL 194
           ++  +++ + + + A NP L+V+ PK + +     +   ++            EG +   
Sbjct: 75  IKSYYEFLISENHTAFNPVLNVDLPKYQNKLPEILSIAQIKSLLEHCSQDNSPEGIRLNA 134

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNN---------IFSIKTQKTGTIITVELPDGFMKLL 245
               L  SGLR S+     +  +  N         IFS+  +     + V      + + 
Sbjct: 135 MIHLLYASGLRVSELVSLKLADILTNKTSKGEVRKIFSVLGKGNKERVIVINEQAVISIA 194

Query: 246 AMTPIGKETFFINNDKQK--------------MNATQFSIWFKAKATKAGVN---KSAHG 288
               I     F+N  K +              M    F+I  K+ A  AG+N    S H 
Sbjct: 195 KYLAIRD--VFVNKAKPRNLIYLFPSSALAGYMTRQNFAILLKSAALYAGLNPEYISPHI 252

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +R   A+   + GA    +    G   +   + YT 
Sbjct: 253 LRHSFASHLLEGGADLRVIQELLGHADISTTQIYTH 288


>gi|331697596|ref|YP_004333835.1| Tyrosine recombinase xerC [Pseudonocardia dioxanivorans CB1190]
 gi|326952285|gb|AEA25982.1| Tyrosine recombinase xerC [Pseudonocardia dioxanivorans CB1190]
          Length = 307

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 47/264 (17%), Positives = 85/264 (32%), Gaps = 28/264 (10%)

Query: 88  AVNSRISF----ESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS---- 139
           + N+  ++      Y   +  + G  D   +    +   V + +  P+       +    
Sbjct: 26  SPNTLRAYGNDLRRYVAHLRER-GVDDLAAVQEADVSGFVAALRSGPAPLAASSAARALA 84

Query: 140 -MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRL 194
            +R L ++A R   V  +   +V  P       R  T ++++Q  +        G + R 
Sbjct: 85  AVRGLHRFAARDGLVDDDVSRAVTPPATARRLPRTLTVDEVEQLLAGCIGDGPTGLRDRA 144

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKL--------- 244
             E L  +G R S++    V  L       +   K G    V +    +           
Sbjct: 145 LLELLYSTGARISEAVGIDVDDLDAESRTVLLHGKGGKQRVVPVGRPALAAVDAWLVRGR 204

Query: 245 --LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
             LA    G     +N    +++        +  A  AGV    S H +R   AT     
Sbjct: 205 PALASRGRGSPALLLNARGARLSRQSAWHVLRGAAEVAGVRAEVSPHTLRHCFATHLLSG 264

Query: 301 GATAHELMATYGWKTVDQAETYTK 324
           GA    +    G  +V   + YT 
Sbjct: 265 GADVRVVQELLGHASVATTQIYTH 288


>gi|315122637|ref|YP_004063126.1| integrase family protein [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|313496039|gb|ADR52638.1| integrase family protein [Candidatus Liberibacter solanacearum
           CLso-ZC1]
          Length = 102

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 41/102 (40%), Positives = 60/102 (58%)

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199
           M V+FKWAV +  V  NP   V R   KT+G   WT E ++QF+ +   G +  LA E +
Sbjct: 1   MAVVFKWAVSRGLVKSNPTSGVSRQPWKTKGFHTWTIEQIEQFRKYHPIGKKASLALEMM 60

Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241
           L+ GLR SD  R G+QH+++ + SI+TQKTG  + + +    
Sbjct: 61  LFLGLRRSDVMRVGIQHIKDEVMSIETQKTGVYVHIPIAPLL 102


>gi|229544386|ref|ZP_04433444.1| tyrosine recombinase XerC [Bacillus coagulans 36D1]
 gi|229324871|gb|EEN90548.1| tyrosine recombinase XerC [Bacillus coagulans 36D1]
          Length = 300

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 38/264 (14%), Positives = 87/264 (32%), Gaps = 24/264 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRKHTPSSAIQFLT 138
            + +  +   +    +             +        +   + +    ++ ++  + ++
Sbjct: 20  KNYSAYTIKFYRLDLEDFFAFLTAQGIASLDEVGYPAGRLYLTMLHEHGYSRATVARKIS 79

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRL 194
           S+R  FK+ +R+  V  NP   + +PK+     + + +E+M+Q  +      +   + R 
Sbjct: 80  SIRSFFKFLMRERIVKENPFALLSQPKQHKRLPKFFYEEEMEQLFAACEGDDALSRRNRA 139

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL------------PDGFM 242
             E L  +G+R S+     +Q +     +I  +  G    + L                 
Sbjct: 140 LLEILYATGIRVSECVNIRLQDIDFEFETIHVKGKGKKERIVLFGHFAGEAVSDYMAHAR 199

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADA 300
           K L          F+N     +              KA +      H +R   AT   + 
Sbjct: 200 KTLMRGKEDHPYLFVNARGGALTDKGVRYILNEMIKKAALTGKIHPHMLRHTFATHLLNH 259

Query: 301 GATAHELMATYGWKTVDQAETYTK 324
           GA    +    G +++   + YT 
Sbjct: 260 GADLRTVQDLLGHESLSSTQVYTH 283


>gi|119964153|ref|YP_947420.1| tyrosine recombinase XerD [Arthrobacter aurescens TC1]
 gi|119951012|gb|ABM09923.1| tyrosine recombinase XerD [Arthrobacter aurescens TC1]
          Length = 319

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 52/288 (18%), Positives = 95/288 (32%), Gaps = 35/288 (12%)

Query: 71  LKWLISEYRKSAH-WGSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGVESR 126
           +   I++Y +       LA N+  ++     +    +   G      IT  H+ + V++ 
Sbjct: 12  VDRAITDYLQHVGVERGLAANTLSAYRRDLARYSNFLAAQGVEQPGSITRHHVTAFVQAL 71

Query: 127 KHT--------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
                        SA + + ++R L K+   +     +P   V  P       +  +  +
Sbjct: 72  SDGSDGAAALGVRSAARTVVAVRGLHKFWALEGTTTADPASDVHPPMPGKRLPKAISVGE 131

Query: 179 MQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL------QNNIFSIKTQK 228
           + +         + G + R   EFL  +G R S++    V  +       +        K
Sbjct: 132 VTRILEAAGSDTATGLRDRALLEFLYSTGARISEAVGLDVDDVSLEDTGGDPAIVRLFGK 191

Query: 229 TGTIITVELPDGFMK-----------LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKA 277
                 V L     +           LLA    G    F+N    +++        K  A
Sbjct: 192 GSKERLVPLGSFGARAVGAYVVRGRPLLASKGKGTPALFLNARGGRISRQSAWTILKTAA 251

Query: 278 TKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
            KA + K  S H +R   AT   + GA    +    G  +V   + YT
Sbjct: 252 EKANITKDVSPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQVYT 299


>gi|323140540|ref|ZP_08075467.1| tyrosine recombinase XerC [Phascolarctobacterium sp. YIT 12067]
 gi|322414992|gb|EFY05784.1| tyrosine recombinase XerC [Phascolarctobacterium sp. YIT 12067]
          Length = 302

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 33/232 (14%), Positives = 84/232 (36%), Gaps = 18/232 (7%)

Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
           +  +   + +  +++   +  + ++++R  FK+ VR+  +  +P   V  PK + +    
Sbjct: 57  LDVRGYLAELNEKQYARRTIARRISALRSFFKYLVREAVIEYSPLTKVRTPKLEKKLPAF 116

Query: 174 WTKEDMQQFKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQK 228
             + ++ +  +        G + +   E L  +G R S+     ++ +  +N F +   K
Sbjct: 117 LDEIEINELLAMPDKSKVLGVRDQAVLEMLYATGCRVSELVGLTLERVDLSNRFVLLLGK 176

Query: 229 TGTIITVELP-----------DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKA 277
                 + +                +L+       +  F+NN   ++         +   
Sbjct: 177 GNKERVMPVGHTCCAALSTYYRVRQQLMLQYQQKHDFIFVNNRGGRLTDRSVRRILEKYI 236

Query: 278 TKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
               ++K  S H +R   AT   + GA    +    G   +   + YT  ++
Sbjct: 237 NMLAIHKNVSPHTIRHSFATHLLEHGADLRSVQELLGHANLSTTQIYTHVSN 288


>gi|297748477|gb|ADI51023.1| hypothetical protein CTDEC_0347 [Chlamydia trachomatis D-EC]
 gi|297749357|gb|ADI52035.1| hypothetical protein CTDLC_0347 [Chlamydia trachomatis D-LC]
          Length = 317

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 80/223 (35%), Gaps = 18/223 (8%)

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           H+  +  + L++++   ++ V+ + +  NP   +  P+   E   P T E +    +   
Sbjct: 85  HSKRTVRRRLSAIKSFARFCVKNQLIPENPAEMIRGPRLPQELPSPLTYEQVLALMAAPE 144

Query: 188 E----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPD-- 239
                G + R   E    SGLR S+        +   +++  I+  K      V +    
Sbjct: 145 LDKVTGFRDRCLLELFYSSGLRISEITALNRADIDFQSHLLHIR-GKGKKERIVPMTKVA 203

Query: 240 --GFMKLLAMTPI-----GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVR 290
                  L            +  F+N   ++++       F+    K G++ S   H +R
Sbjct: 204 VQWLQDYLNHPDRASVEQDHQACFLNRFGKRLSTRSIDRKFQQYLLKTGLSGSITPHTIR 263

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
              AT   + G     +    G  +++    YT  + +++  I
Sbjct: 264 HTIATHWLERGMDLKTIQLLLGHTSLETTTIYTHVSMKLKKQI 306


>gi|226313077|ref|YP_002772971.1| tyrosine recombinase [Brevibacillus brevis NBRC 100599]
 gi|226096025|dbj|BAH44467.1| probable tyrosine recombinase [Brevibacillus brevis NBRC 100599]
          Length = 314

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 41/271 (15%), Positives = 88/271 (32%), Gaps = 25/271 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRKHTPSSAIQFLT 138
            + + ++   + +   + +                   +   + +  R  +  S  + L+
Sbjct: 22  KNASPHTVKQYVADISEFVSFMEQHQITVFAAVSYLHGRSFLAQLAGRGLSRRSIARKLS 81

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194
           S+R L+++ +R+  +  NP   V  PK + +       +++Q F          G + RL
Sbjct: 82  SLRSLYRFLLREGQLEQNPFQLVSTPKMEKKLPSFLYPQEVQAFFDLPDTTTPLGIRDRL 141

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMKLLA------- 246
            FE L  SG+R ++     V  +  ++  ++   K      V +      +L        
Sbjct: 142 IFELLYASGMRVTELTTLSVSDVNPSMGVALVYGKGAKERYVPVGSYACDVLRQYLEHGR 201

Query: 247 ----MTPIGKETFFINNDKQKMNATQFSIWFKAKAT--KAGVNKSAHGVRKFSATISADA 300
                  +      +N   + ++                  +  S H  R   AT   + 
Sbjct: 202 EKLLAGKVEHGNLLVNYRGEPLSDRSVRRIVDKYVDTYALQLRVSPHTFRHTFATHMLNG 261

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRL 331
           GA    +    G   V   + YT    + RL
Sbjct: 262 GADLRTVQELLGHVNVSTTQVYTH-VTKERL 291


>gi|145295931|ref|YP_001138752.1| site-specific tyrosine recombinase XerC [Corynebacterium glutamicum
           R]
 gi|140845851|dbj|BAF54850.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 315

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 47/299 (15%), Positives = 102/299 (34%), Gaps = 17/299 (5%)

Query: 49  SALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSG 107
           +A +G         S    P+ L  LI ++ +        +  +   + S    +     
Sbjct: 8   AARSGRNA-PPSGISGADAPSKLHTLIDDFCEHLDLVVGRSAATIRGYRSDLYAMADTIE 66

Query: 108 DFD-YRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
           D D +   T +           + ++  +   S++    WA +  ++  +    +  PK 
Sbjct: 67  DIDNFSLPTLRQWLGIAVDEGKSRATLARRTASVKAFSSWAQKNGHLKADEAARLISPKI 126

Query: 167 KTEGIRPWTKEDMQQFKSFWS-----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221
             +  +   ++    F    +     E  +     E L  +G+R ++ C   +  +  + 
Sbjct: 127 TRDLPKILGEQQAGDFVENAASTNEEEFLRDSAILELLYATGMRVAELCGIDLPDIDYDR 186

Query: 222 FSIKT-QKTGTIITVELPDGFMKLLAMTPIGKE-------TFFINNDKQKMNATQFSIWF 273
             ++   K      V   +   K L      ++         F+    Q++NA Q     
Sbjct: 187 KMVRVLGKGNKERVVPFGESAHKALRNWLDVRDEMAEDPKALFVGVRGQRINARQVRRIV 246

Query: 274 KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
              A   GV+  S H +R  +AT   D GA   ++    G  ++   + YT  +++  L
Sbjct: 247 DRVAKVTGVDHLSPHSLRHTAATHLLDGGADLRQVQELLGHSSMQTTQIYTHVSNKRLL 305


>gi|332158066|ref|YP_004423345.1| integrase/recombinase [Pyrococcus sp. NA2]
 gi|331033529|gb|AEC51341.1| integrase/recombinase [Pyrococcus sp. NA2]
          Length = 279

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 43/281 (15%), Positives = 103/281 (36%), Gaps = 20/281 (7%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
           I E+         + N+   +  Y  + + +   +           + ++ + ++  S  
Sbjct: 6   IEEFATYLELEGKSKNTIRMYTYYLSKFLEEG--YSPTARDALRFLARLKKKGYSIRSIN 63

Query: 135 QFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
             + +++  FK+  +  E         ++ PK      R  T+E++++         + R
Sbjct: 64  LIVHALKAYFKFEGLETE------AEKLKTPKIPKTLPRSLTEEEIKKVIEAAK-NLRDR 116

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGF----MKLLAM 247
           L    L  +GLR S+ C   ++ +  +     ++  K G    + L +       + L  
Sbjct: 117 LILLLLYGAGLRVSELCNLKIEDVNFEKGFLIVRGGKGGKDRIIPLSETLLQEIQRYLKT 176

Query: 248 TPIGKETFFI---NNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATA 304
                   F+      K K++        K    +AG+N + H +R   AT   + G   
Sbjct: 177 RKDNSPYLFVEIRRGKKDKLSPKTVWWIVKKYGEEAGINLTPHQLRHSFATHMLERGIDI 236

Query: 305 HELMATYGWKTVDQAETYTKGADR-IRLGIKNSRRISSVVD 344
             +    G  ++   + YTK   + ++  ++ +R I +++ 
Sbjct: 237 RIIQELLGHASLSTTQIYTKVTTKHLKEAVEKARLIETIIG 277


>gi|146277571|ref|YP_001167730.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17025]
 gi|145555812|gb|ABP70425.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17025]
          Length = 311

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 54/294 (18%), Positives = 104/294 (35%), Gaps = 33/294 (11%)

Query: 67  KPTTLKWLISEYRKS-AHWGSLAVNSRISFESYFD----QIIRKSGDFDYRKITTKHIRS 121
            P  ++  IS + ++ A     A N+R+++          + R+S +F            
Sbjct: 2   APAGMERWISAFLEAQAAELDAARNTRLAYGRDLKDFAGWLARRSEEFATADRAAVEAYL 61

Query: 122 GV-ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
              +++  +P++  + L+S+R L+++A  + + A NP + +  P R     +    E++ 
Sbjct: 62  VFCDAQGLSPATRARRLSSIRQLYRFAHEEGWRADNPAIRLRGPGRARRLPKTLEIEEVD 121

Query: 181 QFKS-------FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTI 232
           +            ++  + R   E L  +G+R S+     V   + N    +   K G  
Sbjct: 122 RLLDAARDKGRRAADQVRNRCLLELLYATGMRVSEMVGLPVAAARGNPQMILVRGKGGKE 181

Query: 233 ITVELPDGFMKLLAMTPIGKE--------------TFFINNDK--QKMNATQFSIWFKAK 276
             V L     + LA     ++               F          +    F +  K  
Sbjct: 182 RMVPLSPPAREALADWLRVRDEAEAAGQKAGRVPSRFLFPGSGAAGHLTREYFYVLIKQI 241

Query: 277 ATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           A  AGV+    + H +R   AT     GA    +    G   +   E YT   D
Sbjct: 242 AVLAGVDPSKVTPHTLRHAFATHLLAGGADLRVIQTLLGHADLSTTEIYTHVLD 295


>gi|242280626|ref|YP_002992755.1| integrase family protein [Desulfovibrio salexigens DSM 2638]
 gi|242123520|gb|ACS81216.1| integrase family protein [Desulfovibrio salexigens DSM 2638]
          Length = 307

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 43/288 (14%), Positives = 99/288 (34%), Gaps = 35/288 (12%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDF-----DYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
            +L+  +  +++    Q      D      D  K   +     + S ++ P S  + + +
Sbjct: 18  RNLSELTMKAYQKDLLQFKHFIPDSTDSIHDINKFILRDYIKFI-SNQYKPRSIKRKIAT 76

Query: 140 MRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQQFKSF------------- 185
           ++  F +  R + +  +P   +  +  R     +  +K  +     +             
Sbjct: 77  LKSFFNFMERDDIIETSPFRKIHLKIDRSKILPKTISKSSINNLLKYTYTERAKYQLSGR 136

Query: 186 -WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTII-------TV 235
            + E ++     E L  +G+R S+ C+       L N    I  +     +        +
Sbjct: 137 GYREATRDIAIIETLFMTGIRVSELCQITTSSMDLINEQIKITGKGKKERVIPICANNAL 196

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFS 293
            +   +  L     +    FF+N DK+ ++        +   +  G+ +  + H  R   
Sbjct: 197 LILREYETLYRDHLLPDSPFFLNRDKRPISDQSVRRIIRKYCSMCGIPEHVTPHMFRHTI 256

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK---GADRIRLGIKNSRR 338
           AT+  + G     +    G  ++   E YT     + R  L +K+ R+
Sbjct: 257 ATMLLENGVDIRNIQTLLGHSSLSVTEIYTHVSLSSQREILSMKHPRK 304


>gi|224282680|ref|ZP_03646002.1| Integrase [Bifidobacterium bifidum NCIMB 41171]
 gi|310287139|ref|YP_003938397.1| Integrase/recombinase (XerD/RipX family) [Bifidobacterium bifidum
           S17]
 gi|313139838|ref|ZP_07802031.1| tyrosine recombinase xerD [Bifidobacterium bifidum NCIMB 41171]
 gi|309251075|gb|ADO52823.1| Integrase/recombinase (XerD/RipX family) [Bifidobacterium bifidum
           S17]
 gi|313132348|gb|EFR49965.1| tyrosine recombinase xerD [Bifidobacterium bifidum NCIMB 41171]
          Length = 322

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 44/285 (15%), Positives = 91/285 (31%), Gaps = 45/285 (15%)

Query: 85  GSLAVNSRISF----ESYFDQIIRKSGDFDYRKITTKHIR---SGVESRKHTPSSAIQFL 137
             LA  +  ++      Y   +    G  D   I    I    + ++S   +  S  + L
Sbjct: 20  RGLARATVRAYESDLRRYLSWLAHTRGITDPDAIGKADIEEYVAQLDSDGDSARSKARRL 79

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG-------- 189
            S+    ++A+ Q  V+ +   +V+ PK         T +++ +      +         
Sbjct: 80  ASIHEFHRFALAQHAVSDDVSATVKAPKSAQMLPDVLTIDEVSRLLDAIPDPHGTDAARG 139

Query: 190 ------------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITV 235
                        + R   EF+  +G R S++    +  +  +   +   T K      V
Sbjct: 140 RAGIGALPDAVLLRDRALLEFMYATGCRVSEAVGMNLDDIDIDDAHVARLTGKGSKQRLV 199

Query: 236 ELPDGFMKLLAM--------------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281
            L +   + L                    +   F+N   ++++        K    +AG
Sbjct: 200 PLGEYACRALRRYLAEGRGTLEGRAKGTPDRRAVFLNKRGRRLSRQSVWEVIKLAGERAG 259

Query: 282 VNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +++    H +R   AT     GA    +    G  +V   + YT 
Sbjct: 260 IDRPLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTH 304


>gi|110644136|ref|YP_671866.1| site-specific tyrosine recombinase XerC [Escherichia coli 536]
 gi|123048654|sp|Q0TAR4|XERC_ECOL5 RecName: Full=Tyrosine recombinase xerC
 gi|110345728|gb|ABG71965.1| integrase/recombinase XerC [Escherichia coli 536]
          Length = 298

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 41/270 (15%), Positives = 90/270 (33%), Gaps = 20/270 (7%)

Query: 75  ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRK 127
           +  Y +       L+  + ++++   + II  + +   +          ++       + 
Sbjct: 8   VERYLRYLSVERQLSPITLLNYQRQLEAIIHFASENGLQSWQQCDVTMVRNFAVRSRRKG 67

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186
              +     L+++R  F W V Q  +  NP   V  PK      +    +DM +      
Sbjct: 68  LGAAGLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMSRLLDIDI 127

Query: 187 --SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT--------VE 236
                 + R   E +  +GLR S+     ++HL      +     G+           V 
Sbjct: 128 NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVA 187

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSA 294
             + ++ L  +     +  F++   ++++A      F     K G+N     H +R   A
Sbjct: 188 WIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFA 247

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324
           T   ++      +    G   +   + YT 
Sbjct: 248 THMLESSGDLRGVQELLGHANLSTTQIYTH 277


>gi|260905256|ref|ZP_05913578.1| tyrosine recombinase XerD [Brevibacterium linens BL2]
          Length = 315

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 48/287 (16%), Positives = 92/287 (32%), Gaps = 32/287 (11%)

Query: 68  PTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSG- 122
           P +L      Y  S  +   L+ NS  ++     +    +   G     ++   H+ +  
Sbjct: 13  PASLARAFETYLNSLRFERGLSRNSIDAYARDLARYGTWLNGQGMSHLGEVERTHVEAFA 72

Query: 123 --VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
             +      P +  + L ++R    +A+ +   A +P   V  P+      +  + +D++
Sbjct: 73  LHLLDENLAPRTRARALVAVRRFHGFALGEGLAATDPASEVSPPQEGLRLPKALSLDDIE 132

Query: 181 QFKS----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITV 235
              +          +     E L  +G R S++    +  L      ++   K G    V
Sbjct: 133 AMLATTGGEEPAQIRAAALLELLYATGARISEAVGVDLDDLDLETSLVRLYGKGGKERIV 192

Query: 236 EL----------------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK 279
                             P    K  +  P G    F+N    +++        K     
Sbjct: 193 PFGSHAATALGAWVSRTRPSMAAKARSSAPAGA--LFLNARGTRLSRQTAWQIVKDAGEL 250

Query: 280 AGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           AG+    S H  R   AT   + GA    +    G  +V   + YTK
Sbjct: 251 AGLEAEVSPHTFRHSFATHLLEGGADIRVVQELLGHASVTTTQIYTK 297


>gi|152983278|ref|YP_001353923.1| phage-related integrase [Janthinobacterium sp. Marseille]
 gi|151283355|gb|ABR91765.1| phage-related integrase [Janthinobacterium sp. Marseille]
          Length = 342

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 61/344 (17%), Positives = 113/344 (32%), Gaps = 35/344 (10%)

Query: 2   TPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYI 61
           T +  LPP + + R R GK  Y+F  G   R   P   +      Y+ AL          
Sbjct: 6   TVNRHLPPHM-RARIRSGKTYYFFDLGGRPRKESPLGTD------YIEALRKYVELAGDE 58

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121
                   T   L  +Y+      S A ++R    S    + +        +I   H++ 
Sbjct: 59  TP--VHEATFDDLSKKYKLE-EIPSKAESTRRVQNSDIKHLDKFFAKAPLGEIRPMHMQQ 115

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI-NPCLSVERPKRKTEGIRPWTKEDMQ 180
            ++  K TP++A +       ++  A    Y    NPC  +            +T +++ 
Sbjct: 116 FLQFHKATPTTANRCKRLFSSMWNKARAWGYTDEPNPCTGIAGFTLGKR--ETYTTDEV- 172

Query: 181 QFKSFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239
            FK+ W   S+P R A +    +G R  D+ ++    + ++  SI+  KT   + + +  
Sbjct: 173 -FKAVWECASEPLRDAMDLTYLTGQRPGDALKSTEHEISDSYLSIQQGKTKQKLRIAIVG 231

Query: 240 GFMKLLAMTPIGKE-------TFFINNDKQKMNATQFSIWFKAKATKAGVNKS------- 285
               L+      K           +N    ++        F A   KA            
Sbjct: 232 ELAALIDRIKERKRKYKVVHTALLVNTQGMQLTKAVLRKHFDAAREKACEKYPELEPEIK 291

Query: 286 ---AHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKG 325
               + +R  +A   A+            G ++       Y + 
Sbjct: 292 AFWFYDLRAKAADDKAEE-IDEQAASDLLGHESTKTTRRHYLRR 334


>gi|227535113|ref|ZP_03965162.1| site-specific recombinase XerD [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
 gi|227187254|gb|EEI67321.1| site-specific recombinase XerD [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
          Length = 298

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 43/268 (16%), Positives = 93/268 (34%), Gaps = 30/268 (11%)

Query: 85  GSLAVNSRISFESYFDQ----IIRKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFL 137
              +  +  ++ S   +    +    G  D+R +    +++ +     +    +S  + +
Sbjct: 15  RQYSPETVTAYLSDLREFQAFLKANGGFTDFRHVDDLDVQTYLTDLNKQDLARTSIARKI 74

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FWSEGSQPR 193
           +S+R  +++  R + V  NP   VE  K+     + + + ++Q+             + R
Sbjct: 75  SSLRSFYRYLTRIDVVKRNPFELVELKKQHHHLPQFFYEAEIQELFKTVAGKTPLDQRNR 134

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVE------------LPDG 240
              E L  +G+R S+  +  +  +  N    +   K      V             L DG
Sbjct: 135 ALLEVLYGTGIRVSECAKLTLNQVDFNTALLLIHGKGNKDRYVPFGQYAQQALRTYLKDG 194

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQ----FSIWFKAKATKAGVNKSAHGVRKFSATI 296
              L+A +       F+N   + + +           K     A ++   H +R   AT 
Sbjct: 195 RQVLMAKSQAQHRYVFVNQYGRPITSRGIEYILDQLIKQTTLTANIH--PHMLRHSFATH 252

Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324
             D GA    +    G  ++   + YT 
Sbjct: 253 MLDHGADLRTVQELLGHASLSTTQIYTH 280


>gi|34580584|ref|ZP_00142064.1| integrase/recombinase [Rickettsia sibirica 246]
 gi|229586627|ref|YP_002845128.1| site-specific tyrosine recombinase XerD [Rickettsia africae ESF-5]
 gi|28261969|gb|EAA25473.1| integrase/recombinase [Rickettsia sibirica 246]
 gi|228021677|gb|ACP53385.1| Tyrosine recombinase XerD [Rickettsia africae ESF-5]
          Length = 306

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 48/276 (17%), Positives = 99/276 (35%), Gaps = 38/276 (13%)

Query: 85  GSLAVNSRISFESYF----DQIIR-KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
            +L+ NS +S++       + + + K  + +      +     + S      S  + +++
Sbjct: 15  RALSKNSILSYKRDLFDFQNYLAKHKLSELNITTENIRDWIEYLASNDLQARSINRKIST 74

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-----SEGSQPRL 194
           ++  +++ + + + A NP L+V+ PK + +     +   ++            EG +   
Sbjct: 75  IKSYYEFLISENHTAFNPVLNVDLPKYQNKLPEILSIAQIKSLLEHCSQDNSPEGIRLNA 134

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNN---------IFSIKTQKTGTIITVELPDGFMKLL 245
               L  SGLR S+     +  +  N         IFS+  +     + V      + + 
Sbjct: 135 MIHLLYASGLRVSELVSLKLADILTNKTSKGEVRKIFSVLGKGNKERVIVINEQAVISIA 194

Query: 246 AMTPIGKETFFINNDKQK--------------MNATQFSIWFKAKATKAGVN---KSAHG 288
               I     F+N  K +              M    F+I  K+ A  AG+N    S H 
Sbjct: 195 KYLAIRG--VFVNKAKPRNLIYLFPSSALAGYMTRQNFAILLKSAALYAGLNPEYISPHI 252

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +R   A+   + GA    +    G   +   + YT 
Sbjct: 253 LRHSFASHLLEGGADLRVIQELLGHADISTTQIYTH 288


>gi|229817386|ref|ZP_04447668.1| hypothetical protein BIFANG_02648 [Bifidobacterium angulatum DSM
           20098]
 gi|229785175|gb|EEP21289.1| hypothetical protein BIFANG_02648 [Bifidobacterium angulatum DSM
           20098]
          Length = 324

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 43/277 (15%), Positives = 92/277 (33%), Gaps = 37/277 (13%)

Query: 85  GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLT 138
             L+  +  ++ S  D+     R++G  +   I+  H+   +   +S   +  S  + L 
Sbjct: 30  RGLSKATVTAYTSDLDRYCVWLREAGITEPASISRNHVEEYIAHLDSHGASARSKARNLA 89

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS-------- 190
           S+    ++A+ Q  VA +   +V+ PK  +      T +++ +        +        
Sbjct: 90  SIHEFHRFALAQHAVADDVSAAVKAPKGASTLPDVLTVDEVARLLDCAPVPAPGCVMDVP 149

Query: 191 -----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKL 244
                + +   EF+  +G R S++    +  +  N   +    K      V + +     
Sbjct: 150 HAVLMRDKALLEFMYATGCRVSEAVGTDLNDIDLNERVARLLGKGSKQRLVPVGEYACAA 209

Query: 245 LAM---------------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287
           +                     +   F+N   Q+M+             +A + K    H
Sbjct: 210 MTRYLDEGRSLLEGCAKSKAPERSAVFLNKRGQRMSRQSVWEVVNQAGKRAHIGKPLHPH 269

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            +R   AT     GA    +    G  +V   + YT 
Sbjct: 270 TLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTH 306


>gi|116494889|ref|YP_806623.1| integrase [Lactobacillus casei ATCC 334]
 gi|191638400|ref|YP_001987566.1| Tyrosine recombinase xerC [Lactobacillus casei BL23]
 gi|301066449|ref|YP_003788472.1| integrase [Lactobacillus casei str. Zhang]
 gi|122263693|sp|Q039E1|XERC_LACC3 RecName: Full=Tyrosine recombinase xerC
 gi|254799345|sp|B3WEA7|XERC_LACCB RecName: Full=Tyrosine recombinase xerC
 gi|116105039|gb|ABJ70181.1| tyrosine recombinase XerC subunit [Lactobacillus casei ATCC 334]
 gi|190712702|emb|CAQ66708.1| Tyrosine recombinase xerC [Lactobacillus casei BL23]
 gi|300438856|gb|ADK18622.1| Integrase [Lactobacillus casei str. Zhang]
 gi|327382429|gb|AEA53905.1| Site-specific recombinase [Lactobacillus casei LC2W]
 gi|327385628|gb|AEA57102.1| Site-specific recombinase [Lactobacillus casei BD-II]
          Length = 298

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 43/268 (16%), Positives = 93/268 (34%), Gaps = 30/268 (11%)

Query: 85  GSLAVNSRISFESYFDQ----IIRKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFL 137
              +  +  ++ S   +    +    G  D+R +    +++ +     +    +S  + +
Sbjct: 15  RQYSPETVTAYLSDLQEFQAFLKANGGFTDFRHVDDLDVQTYLTDLNKQDLARTSIARKI 74

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FWSEGSQPR 193
           +S+R  +++  R + V  NP   VE  K+     + + + ++Q+             + R
Sbjct: 75  SSLRSFYRYLTRIDVVKRNPFELVELKKQHHHLPQFFYEAEIQELFKTVAGKTPLDQRNR 134

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVE------------LPDG 240
              E L  +G+R S+  +  +  +  N    +   K      V             L DG
Sbjct: 135 ALLEVLYGTGIRVSECAKLTLNQVDFNTALLLIHGKGNKDRYVPFGQYAQQALRTYLKDG 194

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQ----FSIWFKAKATKAGVNKSAHGVRKFSATI 296
              L+A +       F+N   + + +           K     A ++   H +R   AT 
Sbjct: 195 RQVLMAKSQAQHRYVFVNQYGRPITSRGIEYILDQLIKQTTLTANIH--PHMLRHSFATH 252

Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324
             D GA    +    G  ++   + YT 
Sbjct: 253 MLDHGADLRTVQELLGHASLSTTQIYTH 280


>gi|254466241|ref|ZP_05079652.1| phage integrase [Rhodobacterales bacterium Y4I]
 gi|206687149|gb|EDZ47631.1| phage integrase [Rhodobacterales bacterium Y4I]
          Length = 313

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 44/294 (14%), Positives = 97/294 (32%), Gaps = 32/294 (10%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGV 123
                 +W+ +     A     + N+ +++      +         D+   +   I + +
Sbjct: 3   APAANFQWISTFLDAQAAETGASQNTLLAYGRDLKDLTAWLEHRSLDFSTASQDDIEAYL 62

Query: 124 ---ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
              +++    S+  + L++++ ++++A  + +   NP + +  P R+    +     ++ 
Sbjct: 63  ISCDAQGLARSTRARRLSAVKQIYRFAFEEGWRQDNPAIQIRGPGREKRLPKTLEVIEVD 122

Query: 181 QFKSFW-----SEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTI 232
           +          SE  + R     E L  +G+R ++     V   + +    +   K G  
Sbjct: 123 RLLEAARQTGRSEADRLRNTCLMELLYATGMRVTELVSLPVSAARGDPRMLLILGKGGKE 182

Query: 233 ITVELPDGFMKLLAMT----------------PIGKETFFINNDKQKMNATQFSIWFKAK 276
             V L     + LA                  P  +  F        +   +F +  K  
Sbjct: 183 RMVPLSPPAREALAQWLLVRDAAEDERELKGNPASRFLFPSRGKSGHLTRHRFYLLIKEL 242

Query: 277 ATKAGV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           A   G+     + H +R   AT     GA    + A  G   +   E YT   D
Sbjct: 243 AVTGGLSPDKVTPHTLRHAFATHLLANGADLRAIQALLGHADIATTEIYTHVLD 296


>gi|295396859|ref|ZP_06806987.1| tyrosine recombinase XerC [Aerococcus viridans ATCC 11563]
 gi|294974885|gb|EFG50584.1| tyrosine recombinase XerC [Aerococcus viridans ATCC 11563]
          Length = 311

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 44/284 (15%), Positives = 89/284 (31%), Gaps = 34/284 (11%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV------E 124
           +K L S+Y    H    +  +  ++ +  D       D    ++     R         +
Sbjct: 6   IKNLFSDYLT--HEKQYSPETIKAYMADLDNFQAFMKDAGIAQLDQVAYRDIRIYLGNLQ 63

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
               +  S  + L+S+R  +   + +E V+ NP   V+  K   +    + + ++Q    
Sbjct: 64  RGGLSRKSISRHLSSLRSAYNLLLDRELVSENPFNYVKTAKTGLKLPDFFYESEIQSLFD 123

Query: 185 F----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVEL-- 237
                     + R   EFL  +G R S+     +  +       +   K      V +  
Sbjct: 124 SVQGSDPIALRNRALLEFLYGTGARVSEVRDLAINQVDLTADMVLLRGKGNKDRYVPIGS 183

Query: 238 --PDGFMKLLAMTPIGKET-----------FFINNDKQKMNATQ----FSIWFKAKATKA 280
              D  +  L                     F+N   +++ +           K  AT  
Sbjct: 184 FCHDALVDYLENGRSQLMAKGHYEDNEHVFLFVNYKGEQLTSQGIAYILDQIVKNSATTL 243

Query: 281 GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            ++   H +R   AT   + GA    +    G  ++   + YT 
Sbjct: 244 SIH--PHKLRHSFATHLLNNGADIRTVQELLGHASLSTTQIYTH 285


>gi|169826675|ref|YP_001696833.1| hypothetical protein Bsph_1093 [Lysinibacillus sphaericus C3-41]
 gi|168991163|gb|ACA38703.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41]
          Length = 632

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 50/310 (16%), Positives = 102/310 (32%), Gaps = 24/310 (7%)

Query: 25  FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHW 84
            RK +  R  +PY ++      Y                        + +I+EY  S   
Sbjct: 320 VRKKYLERSPIPYKYDKLENNRYWEISNLFVNNDS------------RKIINEYLLSMKL 367

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV--ESRKHTPSSAIQFLTSMRV 142
            +L+  +   +  + ++  +     +   +T + IR       +    ++  + LT +  
Sbjct: 368 ENLSAGTIYQYRFFLNKFFKDK-RENCLSLTPEEIRKYFIPLQKGLKAATIKKQLTILSS 426

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG--SQPRLAFEFLL 200
            + + V + Y+ ++P      P++     +   KE++ + +    +    + R+  E LL
Sbjct: 427 FYNFCVDEGYIHMSPIKKRWFPRKSKSIPKFLEKEEIAKVRQLCEKRNQLRNRVMVELLL 486

Query: 201 YSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDG----FMKLLAMTPIGKETF 255
            SG R S+        +   N  +    K   I  V   +       +LL          
Sbjct: 487 TSGCRISEVNMLNKSDIDLENRTAQVLGKGKKIREVHFSETCAILLERLLESYIDEHPAL 546

Query: 256 FINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGW 313
           FI+    ++   Q     +     A +  S   H  R   AT     GA    +    G 
Sbjct: 547 FISERGTRLGIRQMQKIVEQVGIDAKIKSSLHPHRFRHTFATELLTKGADLSFIADELGH 606

Query: 314 KTVDQAETYT 323
           K +   + Y 
Sbjct: 607 KQLQTTKIYA 616



 Score = 40.0 bits (92), Expect = 0.50,   Method: Composition-based stats.
 Identities = 15/102 (14%), Positives = 41/102 (40%), Gaps = 6/102 (5%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS--S 132
           I+EY  +    + +  +   +        + + D  +  +     ++ ++S K   +  +
Sbjct: 246 INEYLLNLKHKNKSHRTIEEYRFILQAYFKDT-DTHFTLLKNYDFQNWIQSYKGVKNEKT 304

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
              +++  R  + + VR++Y+  +P   +     K E  R W
Sbjct: 305 LDNYMSIFRSFYIFCVRKKYLERSP---IPYKYDKLENNRYW 343


>gi|317481432|ref|ZP_07940499.1| phage integrase [Bacteroides sp. 4_1_36]
 gi|316902417|gb|EFV24304.1| phage integrase [Bacteroides sp. 4_1_36]
          Length = 387

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 52/298 (17%), Positives = 110/298 (36%), Gaps = 31/298 (10%)

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS-----GDFDYRKITTKHI 119
           +K   TL   +++Y  +A    L+  S  S  +   ++              +++     
Sbjct: 89  KKARMTLSAWVAKY--TAEENGLSPASMRSKRNAQARVEEYLLYIGKPTLALKEVDKDFC 146

Query: 120 RSGVESRKH-TPSSAIQFLTS---------MRVLFKWAVRQEYVAINPCLSVE---RPKR 166
           +  +   K  T +   + L+S         +      AV +  +  NP   +E   +P++
Sbjct: 147 KGFIAFLKTCTFNQGKKTLSSTTCRIFMNRLAAALNKAVSEGMLDRNPFKLLETKEKPQK 206

Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIF 222
            +      T E+++Q  +        + AF F  ++GLR SD        +         
Sbjct: 207 LSAMREFLTIEELRQLMATPCRYDIVKKAFLFSCFTGLRYSDMMTLKWSEIHTAADGKTL 266

Query: 223 SI--KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280
            I  +  KT   +T+ L +  +K +       +  F    + ++ +T   +       +A
Sbjct: 267 YIEHQQVKTKNTVTIPLSNEALKWMPRKSKDDDRVF---HQLRITSTTVEVVLGEWMQEA 323

Query: 281 GVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
           G+ K  + H  R  +AT+    GA  + +    G +++   E Y K  D+ ++   N 
Sbjct: 324 GIQKHITYHCSRHTAATLLLTLGADLYTVSKILGHRSIRMTEVYAKIVDKKKIETMNL 381


>gi|187736389|ref|YP_001878501.1| integrase family protein [Akkermansia muciniphila ATCC BAA-835]
 gi|187426441|gb|ACD05720.1| integrase family protein [Akkermansia muciniphila ATCC BAA-835]
          Length = 295

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 38/268 (14%), Positives = 83/268 (30%), Gaps = 23/268 (8%)

Query: 85  GSLAVNSRISFESYFDQIIR-----KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
             L+   ++S     ++  R      +G       T       ++ R    SS    +  
Sbjct: 16  KGLSTAYQLSVRQTLEEFARFLEMDNTGLAQTGIDTLSAFLRHLQDRGMARSSMRVEMVH 75

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-----SEGSQPRL 194
           +R+ F+W      +  +P + +E P++         ++ +              G + R 
Sbjct: 76  LRIFFRWLAGTGILEKDPSVFLEMPRQGLSLPHVLDQKTVSNLLESIDIQDIPLGCRDRA 135

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-VEL----PDGFMKLLAMTP 249
             E +   G+R S+     ++    +   ++    G     V +     D     L    
Sbjct: 136 LLEMIYACGMRVSEIINCKLESFDKDEAFVRVLGKGNKTRLVPVGRSALDALQMYLEKGR 195

Query: 250 IG------KETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAG 301
                   K   F+    + +   +     + +A  AG+ +    H +R   AT   + G
Sbjct: 196 PKLVRTGTKSHIFLTVRGRPLTRERIRQILRERARAAGLEQHVFPHILRHSFATHLLENG 255

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRI 329
           A    +    G   +   + YT    + 
Sbjct: 256 ADLRIIQEMLGHADISTTQIYTHLEQQR 283


>gi|197123191|ref|YP_002135142.1| tyrosine recombinase XerC [Anaeromyxobacter sp. K]
 gi|196173040|gb|ACG74013.1| tyrosine recombinase XerC [Anaeromyxobacter sp. K]
          Length = 343

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 49/285 (17%), Positives = 94/285 (32%), Gaps = 30/285 (10%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHTPSSA 133
             Y  S      + ++R +++    Q      D        +   +R  +  +     + 
Sbjct: 20  DAYLASE--KRASPHTRKAYQVDLAQYAAYLADQGQPLVPSSPALVRGFLARQAGAAGAV 77

Query: 134 I--QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF------KSF 185
              + L+++R L+++ VR+     NP  +V  PKR         +E++          + 
Sbjct: 78  SLGRKLSALRSLYRFLVREGLAPGNPARAVASPKRPKRLPEVLPEEEVAALVETPDAATE 137

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVEL------- 237
                + R   E L  SGLR S+     ++ L      ++   K      V         
Sbjct: 138 APLALRDRAFLELLYGSGLRVSELTGLDLEDLDLAGGLVRVLGKRNKERIVPFGAPAAEA 197

Query: 238 ----PDGFMKLLAMTP---IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288
                DG   +LA  P      +  F+N    ++ +   +         +G+ +    H 
Sbjct: 198 LRRYLDGARPVLATGPDHARAGDAVFLNFRGGRLTSRSVARRLDGWVLASGLPRHVHPHV 257

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           +R   AT     GA    +    G  ++   + YT   D  RL  
Sbjct: 258 LRHCFATHLLGNGADLRGIQELLGHASLSTTQRYTH-LDWKRLAA 301


>gi|163784459|ref|ZP_02179335.1| Phage integrase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880274|gb|EDP73902.1| Phage integrase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 283

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 47/270 (17%), Positives = 98/270 (36%), Gaps = 22/270 (8%)

Query: 67  KPTTLKWLISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
           K   L   I EY     W   + +  +    +   ++     GD   + I  KH+   + 
Sbjct: 13  KKIKLSEFIEEYL---EWCRENRSDETFKKAQYVLNKFKDYIGDIYVKSINKKHMDDYIS 69

Query: 125 SR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
                  + ++A   + +++     AV  EYV  +P    +  K + +  +    + +++
Sbjct: 70  KLLSEGLSRTTANIHIRTIKSALTKAVEWEYVKEHPLRGYKLLKIQQKPPKFLLPQQIKE 129

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT--IITVELPD 239
            +    E     + F   +Y+G+R  +  R   +H+  N   I  +K+ +     + +  
Sbjct: 130 VEKIIDEEIWQFV-FRLFIYTGMRLGEITRLKWEHINLNREIITVEKSKSFHSRVIPIHP 188

Query: 240 GFMK--LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG-VNKSAHGVRKFSATI 296
              K  +     IGK   F    K++    +   +F+     AG  +   H +R   A++
Sbjct: 189 TLKKDIIRYKKDIGKVVPF----KRRYIQERLKNYFRK----AGYPDLRVHDLRHTFASL 240

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326
              AG     +    G ++    E Y   A
Sbjct: 241 MVMAGVDLKTVQELLGHQSYRTTEIYAHLA 270


>gi|217975610|ref|YP_002360280.1| integrase family protein [Shewanella baltica OS223]
 gi|217500805|gb|ACK48857.1| integrase family protein [Shewanella baltica OS223]
          Length = 451

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 55/307 (17%), Positives = 116/307 (37%), Gaps = 13/307 (4%)

Query: 32  RIRLPYPHESTFIPAYMSALTGSTP--KREYINSPRKKPTTLKWLISEYRKSAHWGSLAV 89
           R R+  P  +  + A     TG     + E+              + +  K   +     
Sbjct: 54  RTRILAPVSALTVKAAREKATGQLQAWREEHTQPSMSASPRFDVFVEQTWKPMIFEHWKP 113

Query: 90  NSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKHTP-SSAIQFLTSMRVLFKWA 147
           +++ S     ++ ++   G +    I  K +++  +    T   +A + L +++ +FK A
Sbjct: 114 STKRSVLPALNRRLLAHFGRYPLHMINHKMVQAWFDEISKTRKGAANRNLDTLQSVFKLA 173

Query: 148 VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-----GSQPRLA--FEFLL 200
           +RQ +   NPC+ + + KR+    R  +  +MQ+      E     GS  + A     LL
Sbjct: 174 LRQGHCLTNPCIGIRQNKRRV-LNRFLSVAEMQRLSVALDECEKVGGSIAQCADILRLLL 232

Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINND 260
            +G R S+      ++++ N   +   KTG  + + +    + +L+       T      
Sbjct: 233 LTGCRLSEITFLKGEYVRGNELHLPDSKTGAKV-LYIGQAAVDILSRYHCKANTELFPMK 291

Query: 261 KQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
           +    +   S+W + +      +   H +R   A+ +   G +   + +  G K V    
Sbjct: 292 QGASTSLVQSLWLRLRKQIGIEDVRLHDLRHTFASYAVMDGCSIPMVASLLGHKKVTMTL 351

Query: 321 TYTKGAD 327
            YT   D
Sbjct: 352 RYTHVGD 358


>gi|304316827|ref|YP_003851972.1| integrase [Thermoanaerobacterium thermosaccharolyticum DSM 571]
 gi|302778329|gb|ADL68888.1| integrase family protein [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 327

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 61/304 (20%), Positives = 114/304 (37%), Gaps = 28/304 (9%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV-- 123
           + P T+K    EY     +  + V   +S +S FDQI     D D   I +  +      
Sbjct: 28  RSPNTVKAY--EYDLVLFFRFIKVRKNLSSDSDFDQI--DISDVDISLIESIDLNDLYAY 83

Query: 124 -----ESRKHTPSSAIQFLTSMRVLFKWAV-RQEYVAINPCLSVERPKRKTEGIRPWTKE 177
                  R +TP +  + + S+R  + +   +++ +  NP L +E PK         T +
Sbjct: 84  LSFVTHERSNTPPARARKVASLRSFYNYLYAKRKVITKNPALELESPKLGIRQPVYLTLD 143

Query: 178 DMQQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
           +  +         + R        L  GLR S+     +  ++++  ++   K     TV
Sbjct: 144 ESMKLLDSIDGPFKERDYAIITLFLNCGLRLSELANINISDIKDDKLTVI-GKGNKQRTV 202

Query: 236 ELPDGFM----KLLAMTP----IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--- 284
            L D  +    + L + P      K+  F++   Q+++        K     A ++    
Sbjct: 203 YLNDACISAINEYLKVRPHDGVKDKKALFLSKRLQRISIKTIQYIVKKHLKDANLDGKKY 262

Query: 285 SAHGVRKFSATISADAGA-TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343
           S H +R  +AT+    G      L    G   V   + YT   D  +L    S+   S +
Sbjct: 263 STHKLRHTAATLMYRYGKVDIRTLQRLLGHSNVSTTQIYTH-VDDSQLRDAVSKNPLSEL 321

Query: 344 DSDD 347
           +S++
Sbjct: 322 NSNN 325


>gi|15605070|ref|NP_219854.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis
           D/UW-3/CX]
 gi|76789073|ref|YP_328159.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis
           A/HAR-13]
 gi|166154559|ref|YP_001654677.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis
           434/Bu]
 gi|166155434|ref|YP_001653689.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|237802772|ref|YP_002887966.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis
           B/Jali20/OT]
 gi|237804694|ref|YP_002888848.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis
           B/TZ1A828/OT]
 gi|255348711|ref|ZP_05380718.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis 70]
 gi|255503251|ref|ZP_05381641.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis 70s]
 gi|255506929|ref|ZP_05382568.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis
           D(s)2923]
 gi|301335822|ref|ZP_07224066.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis
           L2tet1]
 gi|34222768|sp|O84351|XERC_CHLTR RecName: Full=Tyrosine recombinase xerC
 gi|123606950|sp|Q3KM11|XERC_CHLTA RecName: Full=Tyrosine recombinase xerC
 gi|254799329|sp|B0B7R6|XERC_CHLT2 RecName: Full=Tyrosine recombinase xerC
 gi|254799330|sp|B0BBY1|XERC_CHLTB RecName: Full=Tyrosine recombinase xerC
 gi|3328768|gb|AAC67942.1| Integrase/recombinase [Chlamydia trachomatis D/UW-3/CX]
 gi|76167603|gb|AAX50611.1| DNA integration/recombination/inversion protein [Chlamydia
           trachomatis A/HAR-13]
 gi|165930547|emb|CAP04042.1| DNA recombination protein [Chlamydia trachomatis 434/Bu]
 gi|165931422|emb|CAP06996.1| DNA recombination protein [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|231272994|emb|CAX09906.1| DNA recombination protein [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231274006|emb|CAX10799.1| DNA recombination protein [Chlamydia trachomatis B/Jali20/OT]
 gi|289525388|emb|CBJ14865.1| DNA recombination protein [Chlamydia trachomatis Sweden2]
 gi|296434940|gb|ADH17118.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis
           E/150]
 gi|296435866|gb|ADH18040.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis
           G/9768]
 gi|296436792|gb|ADH18962.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis
           G/11222]
 gi|296437726|gb|ADH19887.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis
           G/11074]
 gi|296438660|gb|ADH20813.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis
           E/11023]
 gi|297140225|gb|ADH96983.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis
           G/9301]
          Length = 315

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 80/223 (35%), Gaps = 18/223 (8%)

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           H+  +  + L++++   ++ V+ + +  NP   +  P+   E   P T E +    +   
Sbjct: 83  HSKRTVRRRLSAIKSFARFCVKNQLIPENPAEMIRGPRLPQELPSPLTYEQVLALMAAPE 142

Query: 188 E----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPD-- 239
                G + R   E    SGLR S+        +   +++  I+  K      V +    
Sbjct: 143 LDKVTGFRDRCLLELFYSSGLRISEITALNRADIDFQSHLLHIR-GKGKKERIVPMTKVA 201

Query: 240 --GFMKLLAMTPI-----GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVR 290
                  L            +  F+N   ++++       F+    K G++ S   H +R
Sbjct: 202 VQWLQDYLNHPDRASVEQDHQACFLNRFGKRLSTRSIDRKFQQYLLKTGLSGSITPHTIR 261

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
              AT   + G     +    G  +++    YT  + +++  I
Sbjct: 262 HTIATHWLERGMDLKTIQLLLGHTSLETTTIYTHVSMKLKKQI 304


>gi|284007611|emb|CBA73220.1| phage integrase [Arsenophonus nasoniae]
          Length = 336

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 66/335 (19%), Positives = 118/335 (35%), Gaps = 29/335 (8%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGS-----TPKREYI 61
           +PP + K   R+G   Y +R     R R  Y        A   A++ +     T K + +
Sbjct: 1   MPPNLYK---RNG--YYSYR---DPRTRKEYGLGRNKAYAINEAISANQLLLNTEKVKPL 52

Query: 62  NSPRKKPTT--LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119
                   +      +  Y +      L   +   ++     I +   +   + ITTK I
Sbjct: 53  TERIDGQGSVYFHEFLDRYEEILKTRGLREKTLKDYKQRIGVIRKGFVNAPIQNITTKEI 112

Query: 120 RSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
              ++    +   ++A    + +   F+ A+    + INP  S + PK K +  R  + E
Sbjct: 113 ADFLQLSINEERITTAKLMRSLLNDCFREAISLGLIQINPVTSTKTPKIKIQRAR-LSLE 171

Query: 178 DMQQFKSFWSEGSQPRL-AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
           D        + G      A +  L +G R SD  +   + + +    I  QKTG+ I + 
Sbjct: 172 DFNTILGLINNGHHWLTHAMKLALVTGQRVSDVSKIKYKDIHDGKLWIIQQKTGSKIAIP 231

Query: 237 LPDGFMKLLAMTPIGK----ETFFINNDKQKMNATQFSIWFKAKATKAGVNK-----SAH 287
           L      +     I        F INN+  K+   + S  F+     + +N      S H
Sbjct: 232 LDIELYGIKLSKTIADCVNNSEFVINNNGNKITVERISKEFRRFRDISQLNWVGEPPSFH 291

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
            +R  SA +  +   +        G K+      Y
Sbjct: 292 EIRSLSARLYTETMGSNFA-QKLLGHKSATMTAKY 325


>gi|15892414|ref|NP_360128.1| site-specific tyrosine recombinase XerD [Rickettsia conorii str.
           Malish 7]
 gi|34222952|sp|Q92IC9|XERD_RICCN RecName: Full=Tyrosine recombinase xerD
 gi|15619566|gb|AAL03029.1| integrase/recombinase [Rickettsia conorii str. Malish 7]
          Length = 306

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 45/275 (16%), Positives = 99/275 (36%), Gaps = 36/275 (13%)

Query: 85  GSLAVNSRISFESYF----DQIIR-KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
            +L+ NS +S++       + + + K  + +      +     + S      S  + +++
Sbjct: 15  RALSKNSILSYKRDLFDFQNYLAKHKLSELNITTENIRDWIEYLASNDLQARSINRKIST 74

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-----SEGSQPRL 194
           ++  +++ + + + A NP L+V+ PK + +     +   ++            EG +   
Sbjct: 75  IKSYYEFLISENHTAFNPVLNVDLPKYQNKLPEILSIAQIKSLLEHCSQDNSPEGIRLNA 134

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNI---FSIKT-----QKTGTIITVELPDGFMKLLA 246
               L  SGLR S+     +  +  N      ++       K      + + +  +  +A
Sbjct: 135 MIHLLYASGLRVSELVSLKLADILTNKTSKGEVRKIFSVLGKGNKERVIVINEQAVISIA 194

Query: 247 MTPIGKETFFINNDKQK--------------MNATQFSIWFKAKATKAGVN---KSAHGV 289
                +   F+N  K +              M    F+I  K+ A  AG+N    S H +
Sbjct: 195 KYLTIRG-VFVNKAKPRNLIYLFPSSALAGYMTRQNFAILLKSAALYAGLNPEYISPHIL 253

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           R   A+   + GA    +    G   +   + YT 
Sbjct: 254 RHSFASHLLEGGADLRVIQELLGHADISTTQIYTH 288


>gi|294500946|ref|YP_003564646.1| tyrosine recombinase XerC [Bacillus megaterium QM B1551]
 gi|294350883|gb|ADE71212.1| tyrosine recombinase XerC [Bacillus megaterium QM B1551]
          Length = 300

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 40/236 (16%), Positives = 89/236 (37%), Gaps = 20/236 (8%)

Query: 115 TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
             +   + +  ++++  S  + ++ +R  +++  R+E V  NP   V  PK++    R  
Sbjct: 55  DARLFLTRLYEKQYSKRSMSRKISCLRTFYRYLNREELVEDNPFALVTLPKKEERNPRFL 114

Query: 175 TKEDMQQFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
            +E++ +           G + +   E L  +G+R S+     +  +  ++ ++     G
Sbjct: 115 YEEEIVKLFQMNDLTTPLGQRNQSLLELLYATGIRVSECASIKLSDIDFSLQTLLVYGKG 174

Query: 231 TI-------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKA-- 275
                          + V + +G   LL   P    + F+N     +      +      
Sbjct: 175 KKQRYVPFGCYAKGALRVYIDNGRKLLLKKAPSDTHSLFLNYKGTPLTDRGIRLVIDQLV 234

Query: 276 KATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330
           K T   ++ S H +R   AT   + GA    +    G + +   + YT    DR++
Sbjct: 235 KKTAENIHISPHVLRHTFATHMLNEGADLRTVQEMLGHEHLSTTQIYTHVTKDRLK 290


>gi|300088762|ref|YP_003759284.1| integrase family protein [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
 gi|299528495|gb|ADJ26963.1| integrase family protein [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
          Length = 304

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 42/270 (15%), Positives = 85/270 (31%), Gaps = 28/270 (10%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE---------SRKHTPSSAI-- 134
             +  +  ++      + R +G+     +        ++              P SA   
Sbjct: 25  GRSPATISAYRRDLALVARVAGELTPGIVCRAVTAGLLDQVFSAGAVIESVRGPRSAASL 84

Query: 135 -QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS--- 190
            +   ++R  F WA     V  NP  S+   +   +     T  + ++        +   
Sbjct: 85  HRMKAAVRAFFAWASEAGVVDDNPARSIRMHRLPRKLPVFLTAAEKKRLLKELKGRTDFF 144

Query: 191 --QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE---------LPD 239
             + R   E LL +G+R  +     +  +  +   ++ +  G +  V          L  
Sbjct: 145 ALRDRAMIEVLLGTGIRLGELAALDMDDIDLDAKHLRVRAKGNVPQVNFIKTDLRTLLRR 204

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS 297
              +         E  F++N   ++   Q +        KAG+ K  + HG+R   AT  
Sbjct: 205 YLAERRRHGRPEMEALFLSNRDGRLCQRQIANRLAHWLRKAGIEKELTPHGLRHTFATHL 264

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGAD 327
             A      +    G + V   + YT   D
Sbjct: 265 YGATNDLLVVQRALGHRDVSTTQIYTHLVD 294


>gi|189183655|ref|YP_001937440.1| putative integrase [Orientia tsutsugamushi str. Ikeda]
 gi|189184721|ref|YP_001938506.1| putative integrase [Orientia tsutsugamushi str. Ikeda]
 gi|189180426|dbj|BAG40206.1| putative integrase [Orientia tsutsugamushi str. Ikeda]
 gi|189181492|dbj|BAG41272.1| putative integrase [Orientia tsutsugamushi str. Ikeda]
          Length = 372

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 53/282 (18%), Positives = 105/282 (37%), Gaps = 18/282 (6%)

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK 113
               R      +    T K L   Y +       A    I++E Y D++   +     +K
Sbjct: 66  ENENRIKERERKANDITFKELCYRYIE-----EYAKIYTINWEEYTDRVHTYAQSLYGKK 120

Query: 114 ITTKHIRSGVE-----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168
           I+   +    +     S++   ++A   L ++R +F  A++   +  NP L +E+ K + 
Sbjct: 121 ISQIRMSDIQQIFNDISKEGKYATANLLLATLRTMFNKAIKWGLIENNPTLGIEQHKLQA 180

Query: 169 EGIRPWTKEDMQQFKSFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSI 224
              R  + + M +        + P  R      LY+G R S+       ++     I+ I
Sbjct: 181 RERR-LSYDKMGRLLHVLCGETTPLIRDFALLALYTGARKSNVLEMEWDNIDFERKIWHI 239

Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGV 282
              K G    + L D  M++L       E+     +   +  +  + +  +     KAG+
Sbjct: 240 PKTKNGKAQNIPLTDEAMEILQARKFTSESKWVLPSATSESGHLERPNNSWHRVCKKAGI 299

Query: 283 -NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
            N   H +R+  A+   D GA+   +       + +   +YT
Sbjct: 300 KNLRIHDLRRTFASCMGDVGASQRTISIALNHISPESTISYT 341


>gi|126741189|ref|ZP_01756869.1| putative integrase for prophage CP-933U [Roseobacter sp. SK209-2-6]
 gi|126717712|gb|EBA14434.1| putative integrase for prophage CP-933U [Roseobacter sp. SK209-2-6]
          Length = 313

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 53/298 (17%), Positives = 101/298 (33%), Gaps = 31/298 (10%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK----HIRSGVESRK 127
             +I  Y+ SAH+  LA  ++  +E Y D +  + G         K     IR+  +   
Sbjct: 14  SAVIRRYKNSAHFKILAPRTKDDYEKYLDSLEEEFGPDPIMMFEEKEALSEIRTWKDQWS 73

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQE--YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           H+P       + +  L  WA  ++   V       + R  +       W  E++Q  K  
Sbjct: 74  HSPRQYDYATSIVTRLLNWAKAEDTSIVTHFHM-DIARIYKSKRAHLVWLPEEIQALKDV 132

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDGF 241
            +E  +           GL   D      +H+    +      K  KTG  + + +    
Sbjct: 133 ANE--RETRIVVAASEGGLTPQDIGLLKREHVQRTPKGRRLFFKRTKTGNPVAIPVTPAL 190

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG-----------VNKSAH--G 288
            +L+  TP G+E   ++ +  ++   + S   +    +             +    H   
Sbjct: 191 AELIDNTPKGQEYLVVSLEGHRLQPERASGIVRDLRNRVNALAKDDPAKYSIRDELHLYD 250

Query: 289 VRKFSATISADAGATAHELMATYGW---KTVDQAETYTKGADRIRLGIKNSRRISSVV 343
           +R  +AT    AG +  E+  T GW      +  E Y           +  R+++   
Sbjct: 251 MRGTAATELLRAGCSLEEIAITMGWGLRHASNIIEKYVALVPEK--SDEVLRKLAEAR 306


>gi|312879576|ref|ZP_07739376.1| integrase family protein [Aminomonas paucivorans DSM 12260]
 gi|310782867|gb|EFQ23265.1| integrase family protein [Aminomonas paucivorans DSM 12260]
          Length = 294

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 43/270 (15%), Positives = 86/270 (31%), Gaps = 17/270 (6%)

Query: 70  TLKWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRSG 122
           +L  L+  +     +  + + N+ +++     Q +         G     +   +     
Sbjct: 4   SLSSLVDGFLDQLRYRLNRSENTTVNYAVDLAQFVEFLQLEGVEGPEGINRDRVRGFLRS 63

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           +      P+SA + L+S+R    +  R+  V  +P   V  PK      R     D+ + 
Sbjct: 64  LMGYGFAPTSAARKLSSVRGFTAYLTREGLVEQDPAAGVRGPKLPANLPRALAYPDVVRL 123

Query: 183 KSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE-- 236
                 G      RL  E L  SGLR S++     + L+     ++   K      V   
Sbjct: 124 LEEGPGGRHAQRDRLMLELLYGSGLRVSEAAGLDWEDLEPEERWLRVLGKGQKGRAVPFG 183

Query: 237 --LPDGFMKLLAMTPIGKETFFINNDKQKM-NATQFSIWFKAKATKAGVNK-SAHGVRKF 292
             + +            +   F                     A + G+   + H +R  
Sbjct: 184 RGVKELLQDWRPDPVTRQGPVFPGERGAPRITPRTIHRLVTQSARRVGLAGVTPHTLRHS 243

Query: 293 SATISADAGATAHELMATYGWKTVDQAETY 322
            AT   + GA+   +    G +++   + Y
Sbjct: 244 FATHLLEGGASLRVVQELLGHESLLTTQRY 273


>gi|262037917|ref|ZP_06011342.1| tyrosine recombinase XerC [Leptotrichia goodfellowii F0264]
 gi|261748060|gb|EEY35474.1| tyrosine recombinase XerC [Leptotrichia goodfellowii F0264]
          Length = 315

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 54/294 (18%), Positives = 104/294 (35%), Gaps = 33/294 (11%)

Query: 47  YMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS 106
           Y   +TG +     I S +K        ++EY +   + ++   +  SF +Y +   +++
Sbjct: 20  YEEVITGKSYN--TIKSYKKDIMQFIDYLNEYEEIDEFENVETITFRSFIAYLNSTSKEN 77

Query: 107 GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
            D               E +  +  S  + ++++R  FK+   ++ V  N    +  PK 
Sbjct: 78  ND---------------ERKVVSKRSINRKISALRTFFKYLQEKKIVKTNKVNYITMPKF 122

Query: 167 KTEGIRPWTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222
           + E      +ED+ + +   +     G + RL  E L  SG+R S+        +     
Sbjct: 123 EKELPNVLGREDINKLRDAVNTSKITGIRDRLIIELLYSSGIRASELIDLNEYMINIEER 182

Query: 223 SIKTQKTGTIITV-ELPDGFMKLLAMTPIG---------KETFFINNDKQKMNATQFSIW 272
            ++    G    +    +   K L               K+  F N+  +K+        
Sbjct: 183 ELRVIGKGNKERITFFSENSKKWLEKYIEEKKEKYSNYTKDVVFANSKGEKLTTRSLRRL 242

Query: 273 FKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
               A KAG+ K  + H  R   AT   + G     L    G  ++   + YT 
Sbjct: 243 IADYAKKAGLQKEVTPHVFRHTFATELLNNGVDIRYLQELLGHSSISTTQVYTH 296


>gi|310658549|ref|YP_003936270.1| site-specific tyrosine recombinase xerc [Clostridium sticklandii
           DSM 519]
 gi|308825327|emb|CBH21365.1| putative site-specific tyrosine recombinase XerC [Clostridium
           sticklandii]
          Length = 308

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 33/256 (12%), Positives = 89/256 (34%), Gaps = 21/256 (8%)

Query: 90  NSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----SRKHTPSSAIQFLTSMRVLFK 145
           +    F    + +  ++       +    IR+ +      +++T  +  + + ++   FK
Sbjct: 35  SYTSDFRILEEYLKERNMKVSIETLNVATIRTFIHFLRLEKEYTNETIRRKIYALGSFFK 94

Query: 146 WAVRQEYV--AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-----SEGSQPRLAFEF 198
           + V  EY+    NP   +  PK++ +     ++++++            +  + +     
Sbjct: 95  FLVENEYIGMDKNPMSKIRAPKKEEKLPIYLSEKEIRTLLDTIMKTGGKDAIRDKAIISL 154

Query: 199 LLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLLAM-----TPIG 251
              +GLR  +      + +        +   K      + +P+   + L        PI 
Sbjct: 155 FAMTGLRRMELINLNWEDVDFGQKTIKVTMGKGKKQRILPMPETLYQDLLAYMNNSLPIT 214

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAGATAHELM 308
               FI ++ +++N    +  F+    +AG+     + H +R   A++    G     + 
Sbjct: 215 NTALFITSNNKRVNFRGMNNLFQKYIKRAGLSGKGYTLHKLRHSYASLLVQQGVDISIVK 274

Query: 309 ATYGWKTVDQAETYTK 324
              G    +  + Y  
Sbjct: 275 ELMGHSDFNSTKIYVH 290


>gi|312871428|ref|ZP_07731523.1| putative tyrosine recombinase XerC [Lactobacillus iners LEAF
           3008A-a]
 gi|311093081|gb|EFQ51430.1| putative tyrosine recombinase XerC [Lactobacillus iners LEAF
           3008A-a]
          Length = 307

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 35/279 (12%), Positives = 98/279 (35%), Gaps = 26/279 (9%)

Query: 72  KWLISEYRKS-AHWGSLAVNSRISFESYFDQ----IIRKSGDFDYRKITTKHIR---SGV 123
              +  Y     +  + ++N+  ++     +     +   G  D+ K++++ I      +
Sbjct: 5   DDFLKLYYNYLKNERNYSINTCKAYMDDLSEARTFFVENGGFIDWIKLSSRDIEIFIQYL 64

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
             +K   S+  + ++++R  +++  ++  + +NP   +       +       ++M +  
Sbjct: 65  AQKKDKRSTQSRKISTLRSFYRFLNKRNIIPVNPVELISLRGDHKKLPEFLYNDEMVKVL 124

Query: 184 S----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKT-------G 230
                    G +     E    +G+R S+     ++ +    N+  +  +         G
Sbjct: 125 KSISTTTPLGLRNMALLELFYATGMRVSEIANLKLEQIDFELNLILVHGKGNKDRYVAFG 184

Query: 231 TIITVELPDGFMKLLAMT---PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS-- 285
                 L +  ++               F+N++  ++ +       K     AG++ S  
Sbjct: 185 EEAKTALNNYLVEARKKLLLHKTDYGYVFLNSNGNRITSRGLEYIIKNIFLNAGISASVH 244

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            H +R   AT   + GA    +    G +++   + YT 
Sbjct: 245 PHMLRHTFATQMLNNGADLRTVQELLGHESISTTQIYTH 283


>gi|302038654|ref|YP_003798976.1| tyrosine recombinase XerD [Candidatus Nitrospira defluvii]
 gi|300606718|emb|CBK43051.1| Tyrosine recombinase XerD [Candidatus Nitrospira defluvii]
          Length = 299

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 49/275 (17%), Positives = 100/275 (36%), Gaps = 26/275 (9%)

Query: 75  ISEYRKSAH-WGSLAVNSRISFESY---FDQIIRKSGDFDYRKITTKHIRSGVESRK--- 127
           I  Y         L+ N+ ++++     F   +R     D R+++   +   ++      
Sbjct: 5   IERYWDHVRIARGLSRNTLLAYQRDVASFQHYLRDQQVSDVREMSPPLLAGFLDHLHQSG 64

Query: 128 -HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             +PS A + L ++R LF++  ++  +A NP +S+    R     +  + E++ +     
Sbjct: 65  LASPSRA-RALAAVRSLFRFLKQEGMIAANPTVSLRSASRARRLPKTLSPEEVTRLLELP 123

Query: 187 SEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGF 241
                   + R   E L  +G+R S+     V     ++  I  T K      V +    
Sbjct: 124 PRPLPEDHRDRAMVEVLYAAGVRVSELISLRVDQCNLDVGYIGITGKGEKQRVVPIGRPA 183

Query: 242 MKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289
           ++ +                    F++     +    F    +A+A +AG+ +  S H +
Sbjct: 184 IEAVQAYLLAARPALLKQRSSRFVFVSRRGTPLTRQAFWKLLRARAHRAGIARIPSPHML 243

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           R   AT     GA    + A  G   +   + YT 
Sbjct: 244 RHSFATHLLQRGADLRSVQAMLGHADIATTQIYTH 278


>gi|283782972|ref|YP_003373726.1| site-specific tyrosine recombinase XerC [Gardnerella vaginalis
           409-05]
 gi|283441162|gb|ADB13628.1| site-specific tyrosine recombinase XerC [Gardnerella vaginalis
           409-05]
          Length = 322

 Score =  120 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 55/285 (19%), Positives = 101/285 (35%), Gaps = 34/285 (11%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGV--ESRK 127
           LI +Y         L   ++ ++ S          + G  +  ++TT  +RS +  ESR 
Sbjct: 21  LIDDYIDYVRANKGLGERTQKAYASDILQCLAWCNRHGFNNISELTTDDLRSWMADESRS 80

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----- 182
           H  SS  + + ++R  F W    EY++ NP   +   K K        +   +       
Sbjct: 81  HARSSLARKVVAVRGFFAWCQHVEYISGNPAEILMTSKIKNMLPSVLDEYQAESLMNNVD 140

Query: 183 ----------KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGT 231
                     K+  + G +     E L  +G+R  +     +Q +  +  +IK T K   
Sbjct: 141 SKANVSTSCPKNQKAVGLRNAAILELLYATGIRVGELTSLNIQDINFSSHTIKVTGKGNK 200

Query: 232 IITVELPDGFMKLLAMTPIGK-----------ETFFINNDKQKMNATQFSIWFKAKATKA 280
              V       K L+                 E  F+    ++++          +A  A
Sbjct: 201 QRVVPFGVPAYKALSAWISKDGREILLRNSVEEAVFLGTRGKRIDQRLVRQIVHDEAKSA 260

Query: 281 GV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            V + S H +R  +AT   + GA   E+    G  +++  + YT 
Sbjct: 261 HVPDISPHALRHSAATHMLNGGADLREVQELLGHSSLNTTQRYTH 305


>gi|28198608|ref|NP_778922.1| site-specific tyrosine recombinase XerC [Xylella fastidiosa
           Temecula1]
 gi|182681291|ref|YP_001829451.1| site-specific tyrosine recombinase XerC [Xylella fastidiosa M23]
 gi|73920479|sp|Q87DI2|XERC_XYLFT RecName: Full=Tyrosine recombinase xerC
 gi|254799363|sp|B2IA18|XERC_XYLF2 RecName: Full=Tyrosine recombinase xerC
 gi|28056692|gb|AAO28571.1| site-specific recombinase [Xylella fastidiosa Temecula1]
 gi|182631401|gb|ACB92177.1| tyrosine recombinase XerC [Xylella fastidiosa M23]
 gi|307579742|gb|ADN63711.1| site-specific tyrosine recombinase XerC [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 294

 Score =  120 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 42/257 (16%), Positives = 86/257 (33%), Gaps = 17/257 (6%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKI------TTKHIRSGVESRKHTPSSAIQFLT 138
             ++ ++  ++      +I   G     ++        +   S    R  +  S  + L+
Sbjct: 16  RGMSSHTLDAYRRDIGALIAWGGQQAVGEVVALDRAQLQAFVSAEHRRGLSAKSLQRRLS 75

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WSEGSQPRLA 195
           + R  + W V++ ++A+NP   +  PK   +  R    ++   F         G + R  
Sbjct: 76  ACRGFYTWLVKRGHIAVNPAAGLRAPKALRKLPRILDADEAVSFVQIPTDTPLGLRDRAL 135

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-----ELPDGFMKLLAMTPI 250
            E    SGLR S+ C      L  +   +     G+   V            +  A +  
Sbjct: 136 LELFYSSGLRLSELCGLRWDGLDLDAGLVSVLGKGSRQRVVPVGSYALSALREWCASSGG 195

Query: 251 GK-ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHEL 307
           G  +  F       ++A    +  K  A + G+ K    H +R   A+   ++      +
Sbjct: 196 GAQQPVFPGRYGGPISARAVQVRIKQLAQRQGMAKHVHPHMLRHSFASHLLESSGDLRGV 255

Query: 308 MATYGWKTVDQAETYTK 324
               G   +   + YT 
Sbjct: 256 QELLGHADITTTQIYTH 272


>gi|261345243|ref|ZP_05972887.1| tyrosine recombinase XerC [Providencia rustigianii DSM 4541]
 gi|282566940|gb|EFB72475.1| tyrosine recombinase XerC [Providencia rustigianii DSM 4541]
          Length = 311

 Score =  120 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 41/260 (15%), Positives = 82/260 (31%), Gaps = 20/260 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQ------FLT 138
             L+  +  ++      + +   +    +     I  G      +  + +Q       L+
Sbjct: 30  RRLSPVTITNYRRQLSAVCQILDELKVSQWQQLDIAIGRNVAAKSRRTGLQAASMALRLS 89

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLA 195
           ++R    W V Q  +  NP  ++  PK K    +    +++ Q  +         + R  
Sbjct: 90  ALRSFCDWMVEQGELPANPVKTIHAPKGKKRLPKNMDVDEVSQLLNMDSGDPLVVRDRTM 149

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLAMT------ 248
            E +  +GLR S+     V+HL  N        K      + +    +  L         
Sbjct: 150 LEVMYGAGLRLSELVGLDVKHLDLNSGEVWVMGKGSKERRIPMGKTAVNWLKRWLEMREL 209

Query: 249 --PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATA 304
             P     F      ++++       F+    K GVN     H +R   AT   ++    
Sbjct: 210 YDPEDGAVFISTQSGKRISNRNVQKRFEQWGIKQGVNSHINPHKLRHSFATHILESSGNL 269

Query: 305 HELMATYGWKTVDQAETYTK 324
             +    G   +   + YT 
Sbjct: 270 RGVQELLGHANLSTTQIYTH 289


>gi|157364345|ref|YP_001471112.1| phage integrase family protein [Thermotoga lettingae TMO]
 gi|259710440|sp|A8F7B4|XERC_THELT RecName: Full=Tyrosine recombinase xerC
 gi|157314949|gb|ABV34048.1| phage integrase family protein [Thermotoga lettingae TMO]
          Length = 286

 Score =  120 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 41/274 (14%), Positives = 87/274 (31%), Gaps = 26/274 (9%)

Query: 76  SEYRKSAHWGSLAVNSRISF----ESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
           S+Y    H   L+ ++ +++    + +   +I    D + + ++  HI   ++      +
Sbjct: 9   SDYL--MHVRRLSDHTVVAYVGDVKQFLCFLIEN--DIELKDVSRLHIEEYIKKLSKQKT 64

Query: 132 SAI-----QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
                   + ++S+R  F +         NP   +  PK +          ++Q+   F 
Sbjct: 65  KLNSTSLARKISSLRSFFNYLQLTSIKDENPVEGIRNPKIRRRIPDFLLPSEIQKLLEFS 124

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQH--LQNNIFSIKTQKTGTIITVELPDGFMK- 243
            +  +  L    L + GLR S+ C   V+          I   K      V L     + 
Sbjct: 125 MKNQRDYLMLSLLYFCGLRVSELCNLRVEDLSFSPAFVKITMGKGKKDRIVPLTSKLAEK 184

Query: 244 ----LLAMTPIGKETFFINNDK-QKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATI 296
               + +     ++  F +  K       +     +      G+ K    H +R   AT 
Sbjct: 185 LENYITSCGKSPEDYLFGSQIKIHPSTVFRI---VRKYTMMCGIKKRIHPHTLRHTFATH 241

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
               G     +    G   +     Y    D+ +
Sbjct: 242 LLQKGVNIRVVQDLLGHSNLSTTSVYLHVVDQEK 275


>gi|229817402|ref|ZP_04447684.1| hypothetical protein BIFANG_02664 [Bifidobacterium angulatum DSM
           20098]
 gi|229785191|gb|EEP21305.1| hypothetical protein BIFANG_02664 [Bifidobacterium angulatum DSM
           20098]
          Length = 316

 Score =  120 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 45/295 (15%), Positives = 96/295 (32%), Gaps = 40/295 (13%)

Query: 70  TLKWLISEYRKS-AHWGSLAVNSRISFES-YFDQI--IRKSGDFDYRKITTKHIRSGVES 125
           T +  I E+         L+ N+  S+ +   D +  +   G     +IT   +R  +  
Sbjct: 5   TFEKHIREFETYLGANRGLSGNTLKSYRTDVLDCLTYLESQGIEALDEITIDDLRGWMGQ 64

Query: 126 RK--HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
           R   H  SS  + + ++R  F W      +  NP  +++ PK         +++  ++  
Sbjct: 65  RSPSHARSSMARGVVAVRCFFSWGYEHGIIRTNPASALKTPKIADTLPTVLSEDQAERLM 124

Query: 184 SF----------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGT 231
                         +  +     E L  +G+R ++     +  +   N    +  +    
Sbjct: 125 DREDETAAQSPDDPKALRDAAILELLYATGIRVAELVGLDIADVDFSNRTVKVTGKGNKQ 184

Query: 232 IITVELPDGFMKLLAMTPIGKET---------------------FFINNDKQKMNATQFS 270
            +          + A    G+ +                      F+    ++++     
Sbjct: 185 RVVPFGLPAAHAVEAWLKHGRPSVLESCSGMQRTDGDADDAMRALFLGMRGRRLDQRMAR 244

Query: 271 IWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
                 A +AGV +   H +R  +AT   D GA   E+    G  ++   + YT 
Sbjct: 245 RVVHDAARRAGVPDVGPHALRHSAATHLLDGGADLREVQEMLGHSSLKTTQRYTH 299


>gi|169828358|ref|YP_001698516.1| site-specific tyrosine recombinase XerC [Lysinibacillus sphaericus
           C3-41]
 gi|168992846|gb|ACA40386.1| Tyrosine recombinase xerC [Lysinibacillus sphaericus C3-41]
          Length = 320

 Score =  120 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 54/285 (18%), Positives = 95/285 (33%), Gaps = 41/285 (14%)

Query: 85  GSLAVNSRISFESYFDQIIR---------KSGDFDYRKITTKHIRSGVE----------- 124
              +  +R  +E       R            +     I T  I    E           
Sbjct: 21  KGKSQRTRKEYEYDLSLFFRFHTAVQEDLNIENLAAIDIATISIEEIREITLEDLYYFME 80

Query: 125 ----SRKHTPSSAIQFLTSMRVLFKWAV-RQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
                R ++ +S  + + +++  FK+   ++  +  NP   +E PK   +        + 
Sbjct: 81  YCEVQRGNSAASRARKVATLKSFFKYLKGKRRLIEENPAEELESPKIGRKRPIYMNFREA 140

Query: 180 QQFKSFWSEG---SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
            QF           +      F L  G+R ++ C+  +  +Q    ++   K     TV 
Sbjct: 141 TQFIDGIPVNQASPRNYCMMMFFLNLGIRVTELCQLNITSIQGRHLTV-VGKGNKERTVY 199

Query: 237 LPDGFMKLLA------MTP---IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--- 284
           L D  M+ LA       TP    G E  F++    +      +   K    ++G+ K   
Sbjct: 200 LNDSCMQALADYENSGKTPYKGNGDEPLFVSQKGTRFTRQTVAKIVKRINQQSGLQKERL 259

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           + H +R  SAT+   AGA    L    G  +V   + YT   D  
Sbjct: 260 TPHKLRHTSATMMYKAGADIRSLQHILGHSSVATTQIYTHIEDEQ 304


>gi|269215605|ref|ZP_06159459.1| tyrosine recombinase XerD [Slackia exigua ATCC 700122]
 gi|269131092|gb|EEZ62167.1| tyrosine recombinase XerD [Slackia exigua ATCC 700122]
          Length = 307

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 46/272 (16%), Positives = 91/272 (33%), Gaps = 23/272 (8%)

Query: 88  AVNSRISFESYF---DQIIRKSG--DFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRV 142
           +V++   + +      +   + G    D      +          +   +  + L+S+R 
Sbjct: 31  SVHTVRGYRNDLLDFGRWAARHGIVPLDVTYRQIRSYLGEQNQAGYARRTINRRLSSLRG 90

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-----SEGSQPRLAFE 197
            F+W      V+ +P   V  PK      R     DM +  +        E  + +   E
Sbjct: 91  FFRWLNVTGRVSGDPVGVVSGPKLSKGLPRFIPASDMARILNVHHSSSEPEDMRNQAILE 150

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDGFMKLLAMTPIGK---- 252
           FL  SG R S++       +  +   ++    G+    V L D  +  +           
Sbjct: 151 FLYASGARISEASGLLASDVDFSSRQVRVMGKGSKERIVPLHDLAVSSMRAYAEHARPQL 210

Query: 253 ------ETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATA 304
                   FF+++  + M+       FK     AGV+ +   H +R   AT   D GA  
Sbjct: 211 QGSGSCPRFFVSSRGRAMSTDALRKMFKRTLASAGVDGTYTPHDMRHTFATDLLDGGADL 270

Query: 305 HELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
             +    G  ++   + YT  +      + ++
Sbjct: 271 RSVQEMLGHASLSTTQIYTHVSSERLRSVHHA 302


>gi|261823389|ref|YP_003261495.1| site-specific tyrosine recombinase XerC [Pectobacterium wasabiae
           WPP163]
 gi|261607402|gb|ACX89888.1| tyrosine recombinase XerC [Pectobacterium wasabiae WPP163]
          Length = 311

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 49/268 (18%), Positives = 93/268 (34%), Gaps = 23/268 (8%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGVESRK----HT 129
            Y K      L+  +  S+         I+  +G  D+RK+    +RS V   K    H+
Sbjct: 25  RYLK--AERQLSPLTLTSYSRQLSAVITILSAAGVVDWRKLDASGVRSVVSRSKRDGLHS 82

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW--- 186
            S A++ L+++R    W V +  +  NP   V  P+      +    ++M +        
Sbjct: 83  ASLALR-LSALRSFLDWMVSRGVLTANPAKGVSTPRAGRPLPKNMDVDEMNRLLEIDLDD 141

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVEL-------P 238
               + R   E +  +GLR ++      QH+           K      + +        
Sbjct: 142 PLAVRDRTMLEVMYGAGLRLAELVGMDYQHIDLASGEVWVVGKGSKERKLPIGKTAVTWL 201

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATI 296
           + ++ L  +        FI+N  ++++       F     K GVN     H +R   AT 
Sbjct: 202 ERWLALRELFGPQDNAVFISNQGRRISMRNVQKRFAEWGVKQGVNSHVHPHKLRHSFATH 261

Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324
             ++      +    G   +   + YT 
Sbjct: 262 MLESSGDLRAVQELLGHANLTTTQIYTH 289


>gi|78356957|ref|YP_388406.1| integrase/recombinase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78219362|gb|ABB38711.1| integrase/recombinase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 304

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 43/270 (15%), Positives = 86/270 (31%), Gaps = 28/270 (10%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDFD---------YRKITTKHIRSGVESRKHTPSSAI-- 134
             +  +  ++      + R +G+              +        V   +  P SA   
Sbjct: 25  GRSPATIAAYRRDLALVARVAGELAPGIVCREVTVGLLDEVFSAGAVTESERGPRSAASL 84

Query: 135 -QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS--- 190
            +   ++R  F WA     V  NP  S+   +   +     T  + ++        +   
Sbjct: 85  HRMKAAVRAFFAWAAETGVVGDNPARSIRMHRLPRKLPVFLTTAEKKRLLKELKGRTDFS 144

Query: 191 --QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE---------LPD 239
             + R   E LL +G+R  +     +  +  +   ++ +  G +  V+         L  
Sbjct: 145 TLRDRAMIEVLLGTGIRLGELTALDMDDIDLDAKHLRVRAKGNVPQVKFIKTDLRTLLRR 204

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS 297
              +         E  F++N   ++   Q +        KAG+ K  + HG+R   AT  
Sbjct: 205 YLAERRRHGRPEMEALFLSNRDGRLCQRQIANRLAHWLRKAGIEKELTPHGLRHTFATHL 264

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGAD 327
             A      +    G + V   + YT   D
Sbjct: 265 YGATNDLLVVQRALGHRDVSTTQIYTHLVD 294


>gi|325127525|gb|EGC50451.1| tyrosine recombinase XerC [Neisseria meningitidis N1568]
 gi|325133512|gb|EGC56175.1| tyrosine recombinase XerC [Neisseria meningitidis M13399]
 gi|325206779|gb|ADZ02232.1| tyrosine recombinase XerC [Neisseria meningitidis M04-240196]
          Length = 305

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 36/278 (12%), Positives = 84/278 (30%), Gaps = 24/278 (8%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD-------YRKITTKHIRSGV 123
                  Y ++      + ++  ++    +++                + ++ +   + +
Sbjct: 6   FAAHFDAYLENIVREGKSEHTVAAYRRDLEELFALLAQMPSEAEGGVPQDLSRRDFTAAL 65

Query: 124 ES---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                R     +  + L+S R    W V +  +  +P   ++ PK+     +   +E + 
Sbjct: 66  RRLSQRGLNARTLARKLSSWRQYCVWLVERGLLHTDPAADIKPPKQPERVPKALPQEWLN 125

Query: 181 QFKSF-----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIIT 234
           +              +    FE +  SGLR S+        +  +   +     G     
Sbjct: 126 RMLDLPVDGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGKGRKQRQ 185

Query: 235 VELP----DGFMKL--LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK--AGVNKSA 286
           V L     +       L  T    +  F   +  +++  Q        A +   G + S 
Sbjct: 186 VPLTGKSVEALKNYLPLRQTASDGKALFTGRNGTRLSQRQIQKRLAQWAAQNGDGRHVSP 245

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           H +R   A     A      +    G  ++   + YTK
Sbjct: 246 HMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTK 283


>gi|313897322|ref|ZP_07830865.1| phage integrase, N-terminal SAM domain protein [Clostridium sp.
           HGF2]
 gi|312957692|gb|EFR39317.1| phage integrase, N-terminal SAM domain protein [Clostridium sp.
           HGF2]
          Length = 307

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 45/279 (16%), Positives = 94/279 (33%), Gaps = 28/279 (10%)

Query: 78  YRKSAHWGSLA--VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH------- 128
           Y ++    SLA   +     + Y   +  + G  +   I  + I+S +   +        
Sbjct: 13  YIQAVDQKSLATIHSYTQDLQEYLSWLQMQ-GKTEMEDILPRDIQSFLSDMEQGDIQEDG 71

Query: 129 ---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
                SS    L+S+ +  ++        ++P + +   K++ +    +   D++     
Sbjct: 72  LCYKRSSVNHMLSSIHMFHRFISMNHPSILDPSIHLRGGKKEQKLPLYFNPHDIELLLDS 131

Query: 186 W---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241
           +   ++G   +   E L   GLR S+ C   +  +      ++   K      V + +  
Sbjct: 132 FGQDAQGLYQKAILELLYGCGLRVSEVCELRINQVHLEQGYLRVIGKGDKERMVPMHERC 191

Query: 242 MKLLAM---------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVR 290
           M++L                   F+N+    +         K +    G++   SAH  R
Sbjct: 192 MRVLRTYLTQIRPTWEKRKSTRVFLNSRGNVLTRQYVHTLIKQRLQALGLDERLSAHSFR 251

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              AT   D GA    +    G   +   + YT   +R 
Sbjct: 252 HSFATHLLDGGADLRVVQELLGHSDIATTQIYTHVQNRR 290


>gi|238853068|ref|ZP_04643460.1| tyrosine recombinase XerC [Lactobacillus gasseri 202-4]
 gi|238834316|gb|EEQ26561.1| tyrosine recombinase XerC [Lactobacillus gasseri 202-4]
          Length = 307

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 43/279 (15%), Positives = 103/279 (36%), Gaps = 26/279 (9%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQ----IIRKSGDFDYRKITTKHIRSGVESR 126
             LI +++   ++  + + N+  S+ +  D+         G   + K+ ++ +   ++S 
Sbjct: 6   DKLIEQFQDYLNYERNYSKNTVSSYLNDLDEAKQFFKENGGFGSWDKVKSRDVEIFLQSL 65

Query: 127 KH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
                + ++  + ++S+R  +++ V++E +  +P  ++     + +  + + +++M+Q  
Sbjct: 66  AAQNRSRTTQARKMSSLRSFYRFLVKREVLENDPMQTISLRLGEKKLPQFFYEKEMRQVF 125

Query: 184 S----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVEL- 237
                      + R  FE    +G+R S+     +  +   +   +   K      V   
Sbjct: 126 DSLVGHDKLVVRNRAMFELFYATGMRLSEMASLKLDQIDFGLKIILVHGKGNKDRYVPFG 185

Query: 238 ----------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS-- 285
                      D     L          F+NN  QK+         +    KAGV     
Sbjct: 186 KDAFDALREYRDDVRPALLGQNEDLGYVFLNNRGQKLTGRGIEYIMQQVFIKAGVGGKVH 245

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            H +R   AT   + GA    +    G +++   + YT 
Sbjct: 246 PHMLRHSFATEMLNNGADLRSVQELLGHESLSTTQIYTH 284


>gi|182417143|ref|ZP_02948516.1| integrase/recombinase, phage integrase family [Clostridium
           butyricum 5521]
 gi|237667184|ref|ZP_04527168.1| phage integrase [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182378985|gb|EDT76491.1| integrase/recombinase, phage integrase family [Clostridium
           butyricum 5521]
 gi|237655532|gb|EEP53088.1| phage integrase [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 332

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 42/261 (16%), Positives = 93/261 (35%), Gaps = 13/261 (4%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSS 132
           I  Y +     + +  +  ++            +     IT   IR  +        PS+
Sbjct: 58  ILLYLQVKKLENYSKATLSNYMYTLRNFSTFI-NKPVSTITKNDIRYFMAINYTNLKPST 116

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
               L S++  F+W  ++E +  NP   +   +      +  T E++++ +    +  + 
Sbjct: 117 VNNKLASLKAFFEWMEQEEIIPKNPARHLSGTRLPKRLRKSLTIEELEKIRLVCKD-VRE 175

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG----FMKLLAM 247
           R+  EFL  +G R S+  +A +  L  +  S++   K      V   D         +  
Sbjct: 176 RVLIEFLFATGCRISEVVKANISDLDLSNNSLRVIGKGDKQRIVFFSDKTKLHLKNYIDT 235

Query: 248 TPIGKETFFINN--DKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGAT 303
               ++  FI++     +++     +       ++ + K    H +R   AT+   +GA 
Sbjct: 236 RKDNEDALFISSKFPYNRISKRGLELIVSKIGERSNIGKPVFPHLLRHTMATLGLQSGAD 295

Query: 304 AHELMATYGWKTVDQAETYTK 324
              +    G  T    + Y +
Sbjct: 296 ITTIQHLLGHTTPSTTQIYAE 316


>gi|183602465|ref|ZP_02963831.1| probable integrase/recombinase [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|219683221|ref|YP_002469604.1| tyrosine recombinase XerD [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|241191181|ref|YP_002968575.1| Integrase [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|241196587|ref|YP_002970142.1| Integrase [Bifidobacterium animalis subsp. lactis DSM 10140]
 gi|183218384|gb|EDT89029.1| probable integrase/recombinase [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|219620871|gb|ACL29028.1| tyrosine recombinase XerD [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|240249573|gb|ACS46513.1| Integrase [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|240251141|gb|ACS48080.1| Integrase [Bifidobacterium animalis subsp. lactis DSM 10140]
 gi|295794174|gb|ADG33709.1| Integrase [Bifidobacterium animalis subsp. lactis V9]
          Length = 307

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 47/273 (17%), Positives = 96/273 (35%), Gaps = 30/273 (10%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRK---ITTKHIRSGVESRKHTPSSAI---QFLT 138
             L+  +  ++E+  DQ +R  G+    K   IT+  +   V ++  + +SA+   + L 
Sbjct: 20  RGLSAATVQAYENDIDQYVRWLGEQGIAKAASITSNDVEDFVAAQSKSGTSAVSLARRLA 79

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK--SFWSEGS-----Q 191
           S+ +  ++   +  VA +   SV  PK         T +++Q+    +   + S     +
Sbjct: 80  SIHMFHRFMQSERVVADDVSQSVRPPKSAETLPEVLTVDEVQRLLDAARHDDASEAVSMR 139

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---------------IITVE 236
                E +  +G R S++       +  +   ++    G                   VE
Sbjct: 140 DSALLELMYATGCRVSEAVGLDFTDVDMDAQVVRLTGKGAKQRLVPFGTYAANALRAYVE 199

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSA 294
                ++  A     +   F+N   +++         K     A V+K    H +R   A
Sbjct: 200 HARPELENKAKGERERSAIFLNKRGKRLTRQSVWEIIKHAGALAHVSKPLHPHTLRHSFA 259

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           T     GA    +    G  +V   + YT  + 
Sbjct: 260 THMLQGGADVRTVQELLGHASVKTTQMYTHVSQ 292


>gi|83595882|gb|ABC25244.1| tyrosine recombinase xerC [uncultured marine bacterium Ant4D3]
          Length = 312

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 42/275 (15%), Positives = 87/275 (31%), Gaps = 21/275 (7%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126
           L  ++ +Y     +    + ++  ++     ++I      G   +       IR  + + 
Sbjct: 8   LNHVVQQYLDYLAYNKRYSPHTINAYARDMQRLIETLEDQGHGMWADAQADTIRDAMVTA 67

Query: 127 KHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
           + T   P S  + L+S R  F + ++Q  V +NP   +  PK   +       + + Q  
Sbjct: 68  RKTHLAPKSIQRILSSWRSFFTYLLQQNLVKLNPVDGIRAPKSPRKLPNSLDPDQISQVL 127

Query: 184 SFW-----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVE- 236
           +           + +   E     GLR ++     V  +   +   I T K      +  
Sbjct: 128 NATITSDDPMAMRDKAMLELTYSCGLRLAELASLNVFDIDLTDASLIVTGKGNKTRQLPI 187

Query: 237 -------LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGV 289
                  L     +   +        FIN+  Q+M      +     A   G +   H +
Sbjct: 188 GRQAITALKSWLQQRGQLKCHDANALFINHRGQRMGVRGIQMRMANMAATHGQHIHPHML 247

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           R   A+    +      +    G   +   + YT 
Sbjct: 248 RHSFASHLLQSSGDLRAVQELLGHSNISTTQVYTH 282


>gi|153805941|ref|ZP_01958609.1| hypothetical protein BACCAC_00181 [Bacteroides caccae ATCC 43185]
 gi|149130618|gb|EDM21824.1| hypothetical protein BACCAC_00181 [Bacteroides caccae ATCC 43185]
          Length = 293

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 50/276 (18%), Positives = 101/276 (36%), Gaps = 24/276 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIR----KSGDFDYRKITTKHIRSGV---ES 125
           LI  +     +  + +  + +++     Q+      + G F+  ++  + IR  +     
Sbjct: 2   LIKSFLDYLRYERNYSEKTVLAYSEDIKQLQEFAQEEYGRFNPLEVEAELIREWIVSLMD 61

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           R +T +S  + L+S+R  +K+ +RQ  V  +P   +  PK K        + +M +    
Sbjct: 62  RGYTSTSVNRKLSSLRSFYKYLLRQGEVTKDPLCKITGPKNKKPLPVFLKESEMNKLLDE 121

Query: 186 WSEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPD 239
              G      + RL  E    +G+R S+      + +  +   +K T K      +   D
Sbjct: 122 TDFGEGFKGYRDRLIIEVFYATGIRLSELIGLDDKDVDFSASLLKVTGKRNKQRLIPFGD 181

Query: 240 GFMKLL--------AMTPIGKETFFINNDKQKMNATQFSIWFKA--KATKAGVNKSAHGV 289
              +L+         M P   E FF+  + +++         K           +S H +
Sbjct: 182 ELRELMLGYINIRNEMIPERSEAFFVRENGERLYKNLVYNLVKRNLSKVVTLKKRSPHVL 241

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           R   AT   +  A    +    G +++   E YT  
Sbjct: 242 RHTFATTMLNNDAELGAVKELLGHESIATTEIYTHA 277


>gi|42519036|ref|NP_964966.1| integrase/recombinase CodV [Lactobacillus johnsonii NCC 533]
 gi|41583323|gb|AAS08932.1| probable integrase/recombinase CodV [Lactobacillus johnsonii NCC
           533]
          Length = 307

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 40/279 (14%), Positives = 105/279 (37%), Gaps = 26/279 (9%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQ----IIRKSGDFDYRKITTKHIRSGVESR 126
             LI +++   ++  + + N+  S+ +  ++         G   + ++ ++ +   +++ 
Sbjct: 6   DKLIKQFQDYLNYERNYSKNTVNSYLNDLNEAKEFFKENGGFSGWDQVKSRDVEIFLQNL 65

Query: 127 K---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
                + ++  + ++S+R  +++ V++E +  +P  ++     + +  + + +++M+Q  
Sbjct: 66  ATQNRSRTTQARKMSSLRSFYRFLVKREVLDNDPMQTISLRLGEKKLPQFFYEKEMRQVF 125

Query: 184 SFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELP 238
              +       + R  FE    +G+R S+     +  +  +    +   K      V   
Sbjct: 126 DSLAGHEKLVVRNRAMFELFYATGMRLSEMASLKLDQIDFDLKIILVHGKGNKDRYVPFG 185

Query: 239 DGFMKLLA-----MTPI------GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS-- 285
                 L        P        +   F+NN  QK+         +    KAGV     
Sbjct: 186 KDAANALKEYCDEGRPALLGKNEDRGYVFLNNRGQKLTGRGIEYIMQQVFIKAGVGGKVH 245

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            H +R   AT   + GA    +    G +++   + YT 
Sbjct: 246 PHMLRHSFATEMLNNGADLRSVQELLGHESLSTTQIYTH 284


>gi|289177291|gb|ADC84537.1| Integrase/recombinase (XerD/RipX family) [Bifidobacterium animalis
           subsp. lactis BB-12]
          Length = 309

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 47/273 (17%), Positives = 96/273 (35%), Gaps = 30/273 (10%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRK---ITTKHIRSGVESRKHTPSSAI---QFLT 138
             L+  +  ++E+  DQ +R  G+    K   IT+  +   V ++  + +SA+   + L 
Sbjct: 22  RGLSAATVQAYENDIDQYVRWLGEQGIAKAASITSNDVEDFVAAQSKSGTSAVSLARRLA 81

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK--SFWSEGS-----Q 191
           S+ +  ++   +  VA +   SV  PK         T +++Q+    +   + S     +
Sbjct: 82  SIHMFHRFMQSERVVADDVSQSVRPPKSAETLPEVLTVDEVQRLLDAARHDDASEAVSMR 141

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---------------IITVE 236
                E +  +G R S++       +  +   ++    G                   VE
Sbjct: 142 DSALLELMYATGCRVSEAVGLDFTDVDMDAQVVRLTGKGAKQRLVPFGTYAANALRAYVE 201

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSA 294
                ++  A     +   F+N   +++         K     A V+K    H +R   A
Sbjct: 202 HARPELENKAKGERERSAIFLNKRGKRLTRQSVWEIIKHAGALAHVSKPLHPHTLRHSFA 261

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           T     GA    +    G  +V   + YT  + 
Sbjct: 262 THMLQGGADVRTVQELLGHASVKTTQMYTHVSQ 294


>gi|258539622|ref|YP_003174121.1| tyrosine recombinase xerD [Lactobacillus rhamnosus Lc 705]
 gi|257151298|emb|CAR90270.1| Tyrosine recombinase xerD [Lactobacillus rhamnosus Lc 705]
          Length = 299

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 80/235 (34%), Gaps = 23/235 (9%)

Query: 111 YRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170
              +  +   + +  +    +S  + ++S+R  +++ VR + V  NP   VE  K+    
Sbjct: 49  VDDLDVQTYLTDLNKQALARTSIARKISSLRSFYRYLVRIDVVKRNPFELVELKKQHHHL 108

Query: 171 IRPWTKEDMQQFKS----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIK 225
            + + + ++Q+             + R   E L  +G+R S+     +  +  N    + 
Sbjct: 109 PQFFYEAEIQELFKTVEGETPLDQRNRALLEVLYGTGIRVSECANLTLNQVDFNTGLLLI 168

Query: 226 TQKTGTIITVE------------LPDGFMKLLAMTPIGKETFFINNDKQKMNATQ----F 269
             K      V             L DG   L+          F+N   + + A       
Sbjct: 169 HGKGNKDRYVPFGRYAQRALQTYLKDGRQTLMNKHDAQHRFVFVNQYGRPITARGIEYIL 228

Query: 270 SIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
               K  +  A ++   H +R   AT   D GA    +    G  ++   + YT 
Sbjct: 229 DQLIKQTSLTANIH--PHMLRHSFATHMLDHGADLRTVQELLGHASLSTTQIYTH 281


>gi|189182948|ref|YP_001936733.1| putative integrase [Orientia tsutsugamushi str. Ikeda]
 gi|189179719|dbj|BAG39499.1| putative integrase [Orientia tsutsugamushi str. Ikeda]
          Length = 271

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 40/200 (20%), Positives = 79/200 (39%), Gaps = 8/200 (4%)

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           ++A   L ++R +F  A++   +  NP L +E+ K +    R  + + M +        +
Sbjct: 42  ATANLLLATLRTMFNKAIKWGLIENNPTLGIEQHKLQARERR-LSYDKMGRLLHVLCGET 100

Query: 191 QP--RLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLA 246
            P  R      LY+G R S+       ++     I+ I   K G    + L D  M++L 
Sbjct: 101 TPLIRDFALLALYTGARKSNVLEMEWDNIDFERKIWHIPKTKNGKAQNIPLTDEAMEILQ 160

Query: 247 MTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGAT 303
                 E+     +   +  +  + +  +     KAG+ N   H +R+  A+   D GA+
Sbjct: 161 ARKFTSESKWVLPSATSESGHLERPNNSWHRVCKKAGIKNLRIHDLRRTFASCMGDVGAS 220

Query: 304 AHELMATYGWKTVDQAETYT 323
              +       + +   +YT
Sbjct: 221 QRTISIALNHISPESTISYT 240


>gi|78484754|ref|YP_390679.1| Phage integrase [Thiomicrospira crunogena XCL-2]
 gi|78363040|gb|ABB41005.1| tyrosine recombinase XerC subunit [Thiomicrospira crunogena XCL-2]
          Length = 317

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 42/299 (14%), Positives = 95/299 (31%), Gaps = 21/299 (7%)

Query: 44  IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII 103
           +  Y   +     + +  ++       L  L+  Y        L   +  S +++    +
Sbjct: 1   MSDYQRFIKQLKLENKSEHTISNYQRDLMGLLVFYLGDYLEQPLDEKALKSDQAW--AFL 58

Query: 104 RKSGD-FDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162
            +  D    +    +   +    +     S  + L+++R  + + + Q     NP   ++
Sbjct: 59  DQFDDWQAIKLPVLQAFIAFRMQQGIAARSIARQLSAIRAFYAFLIEQGRANHNPAKGLK 118

Query: 163 RPKRKTEGIRPW----TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRA------ 212
            PK+     +      T++ ++Q    W +  + +  FE L   GLR S+          
Sbjct: 119 APKQPKALPKSLDVDLTRQLLEQPLKTWQD-VRDQAIFEILYSGGLRVSELVELDLSPGL 177

Query: 213 -----GVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT 267
                G   +       +    G      L             G++  F+N   +++   
Sbjct: 178 DGLASGWVRVLGKGQKERDAPVGQPAQKALHRWLEIRSDYAQPGEQAVFVNRFGKRLGVR 237

Query: 268 QFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
                   +  +AG+    S H +R   AT   ++      +    G   +   + YTK
Sbjct: 238 SIQTQLDKRTLQAGLPTKMSPHRLRHACATHVLESSGDLRAVQEMLGHANLSTTQIYTK 296


>gi|225174941|ref|ZP_03728938.1| integrase family protein [Dethiobacter alkaliphilus AHT 1]
 gi|225169581|gb|EEG78378.1| integrase family protein [Dethiobacter alkaliphilus AHT 1]
          Length = 286

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 47/278 (16%), Positives = 97/278 (34%), Gaps = 20/278 (7%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVESRKHT 129
           I ++++  +    +  +   +             + +G      I +  I   + S K  
Sbjct: 7   IEQFQQYMNDIERSPVTIALYLRDLRYFGSYMEKKHNGPVYLEDIKSADIEGFLRSLKER 66

Query: 130 ---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
              P+S  ++L ++R  +K+A ++E V  +  L+V+  K  T+     +++++ +  +  
Sbjct: 67  NIAPNSRSRYLYTLRSFYKFAYKKELVERDISLAVDLVKLPTKERHYLSQQEVAEL-ADT 125

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTGTIITVELPDGFMKL 244
                 RL   FL  +GLR S+  +  +  +     I  + + K      V + +  + L
Sbjct: 126 ITNDLVRLIVIFLANTGLRISECIKLTMDDVDLDKGIIHVISGKGNKDRNVPINNKLLPL 185

Query: 245 LA------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATI 296
           L               FF       ++ T  +   +      G  K  S H +R   AT 
Sbjct: 186 LIDYKDNWRDAYNSNFFFATKKTGTISNTYVNNTLRQAVQSLGWKKNVSCHILRHSFATS 245

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIK 334
                    E+    G   +     Y   AD  +L   
Sbjct: 246 LVKQKVGLVEIQKLLGHSDLKITSVYMH-ADLEQLQDA 282


>gi|332184625|gb|AEE26879.1| site-specific recombinase [Francisella cf. novicida 3523]
          Length = 292

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 38/263 (14%), Positives = 93/263 (35%), Gaps = 16/263 (6%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI---RSGVESRKHTPSSAIQFLTSMR 141
            + +  +  +++    Q+ +   D +   +T   I      + ++ ++P +  + L+S+R
Sbjct: 18  KNYSQETINNYQKDLLQLNQALNDKNITSLTYSDILIWIKKLHAQGNSPKTLQRKLSSVR 77

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG---SQPRLAFEF 198
             F + +  E V  NP   ++ PK      +    +++             ++    F+ 
Sbjct: 78  SFFNFLINSEIVTQNPASGIKAPKSSKRLPKVVNTDELAYLLDVNPSNDIEARDIACFDL 137

Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL--------PDGFMKLLAMTPI 250
           L   G+R S+     ++ +  +  SI+    G    +           D ++K+      
Sbjct: 138 LYSCGIRLSELSSIELKDISISQKSIRVTGKGNKQRITYFGPKTLSNLDRWLKIRDTLKP 197

Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATK-AGVNKSAHGVRKFSATISADAGATAHELMA 309
                FI+ D + +         +  + K A  +   H +R   A+   D+      +  
Sbjct: 198 NCNYLFISRDGKHLTNRSIQKRLEIFSQKYASRHIHPHMLRHSFASHMLDSSKDLLAVKD 257

Query: 310 TYGWKTVDQAETYTKGADRIRLG 332
             G   +   + YT   +  +L 
Sbjct: 258 LLGHADISSTQIYTH-LNFQQLA 279


>gi|311064002|ref|YP_003970727.1| integrase/recombinase [Bifidobacterium bifidum PRL2010]
 gi|310866321|gb|ADP35690.1| Integrase/recombinase (XerD/RipX family) [Bifidobacterium bifidum
           PRL2010]
          Length = 322

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 44/285 (15%), Positives = 91/285 (31%), Gaps = 45/285 (15%)

Query: 85  GSLAVNSRISF----ESYFDQIIRKSGDFDYRKITTKHIR---SGVESRKHTPSSAIQFL 137
             LA  +  ++      Y   +    G  D   I    I    + ++S   +  S  + L
Sbjct: 20  RGLARATVRAYESDLRRYLSWLAHTRGITDPDAIGKADIEEYVAQLDSDGDSARSKARRL 79

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG-------- 189
            S+    ++A+ Q  V+ +   +V+ PK         T +++ +      +         
Sbjct: 80  ASIHEFHRFALAQHAVSDDVSATVKAPKSAQMLPDVLTIDEVSRLLDAIPDPHGTDAARG 139

Query: 190 ------------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITV 235
                        + R   EF+  +G R S++    +  +  +   +   T K      V
Sbjct: 140 RAGIGALPDAVLLRDRALLEFMYATGCRVSEAVGMNLDDIDIDDAHVARLTGKGSKQRLV 199

Query: 236 ELPDGFMKLLAM--------------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281
            L +   + L                    +   F+N   ++++        K    +AG
Sbjct: 200 PLGEYACRALRRYLAEGRGTLEGRAKGTPERRAVFLNKRGRRLSRQSVWEVIKLAGERAG 259

Query: 282 VNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +++    H +R   AT     GA    +    G  +V   + YT 
Sbjct: 260 IDRPLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTH 304


>gi|134101746|ref|YP_001107407.1| integrase/recombinase [Saccharopolyspora erythraea NRRL 2338]
 gi|291003082|ref|ZP_06561055.1| integrase/recombinase [Saccharopolyspora erythraea NRRL 2338]
 gi|133914369|emb|CAM04482.1| integrase/recombinase [Saccharopolyspora erythraea NRRL 2338]
          Length = 313

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 48/261 (18%), Positives = 87/261 (33%), Gaps = 27/261 (10%)

Query: 89  VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT--------PSSAIQFLTSM 140
            +       Y D ++  SG     ++ + H+ + +   +           SSA + L + 
Sbjct: 34  DSYARDLRRYADHLLE-SGVRALGEVRSTHLSAFLAELREGGPERPALAQSSAARALIAA 92

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLAF 196
           R L ++A     V ++    +  P       +     D+ +           G + R   
Sbjct: 93  RGLHRFAHADGIVEVDVAREISPPSPPKRLPKALPVSDVLRLLDNTGGEDVRGLRDRALL 152

Query: 197 EFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGTIITVEL-PDGFMKL---------- 244
           E L  SG R S++    V  +       +   K G    V +       L          
Sbjct: 153 ELLYSSGARISEAVGLDVDDVDEAERTILLDGKGGRQRLVPVGRPALAALGAYMVRARPV 212

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGA 302
           LA    G    F+N+   +++        K+ A +AG+    S H +R   AT   + GA
Sbjct: 213 LAGRGRGSSAVFLNSRGTRLSRQSAWNALKSAAERAGIGSGVSPHVLRHSFATHLLEGGA 272

Query: 303 TAHELMATYGWKTVDQAETYT 323
               +    G  +V   + YT
Sbjct: 273 DVRVVQELLGHASVTTTQVYT 293


>gi|154249762|ref|YP_001410587.1| integrase family protein [Fervidobacterium nodosum Rt17-B1]
 gi|154153698|gb|ABS60930.1| integrase family protein [Fervidobacterium nodosum Rt17-B1]
          Length = 290

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 43/288 (14%), Positives = 98/288 (34%), Gaps = 24/288 (8%)

Query: 71  LKWLISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH- 128
           ++ L+  Y     H    + N+  ++     +          + I    +   V++    
Sbjct: 6   IEALLRTYEDYLVHVRRSSENTVKAYIKDIRRFFEYI-QKPPKDIVRSDVEKFVKALSKG 64

Query: 129 -------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
                  T ++  ++++S++ +F +      V  NP   V  P+ + +     T ++++ 
Sbjct: 65  EITGGEVTETTISRYISSLKTIFDYLQLIGVVNENPTERVRHPRLRKKIPSFLTMKEVKA 124

Query: 182 FKSFWSEG--SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVEL 237
             + + E    + +     L + GLR S+ C   V+ +        +   K      V +
Sbjct: 125 MINTFDEEKELKYKTIISVLYFCGLRVSELCNLRVEDVSFYPPYIKVVMGKGNKDRLVPI 184

Query: 238 PDG----FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRK 291
            D       K +         +FI +  + ++        K  A +AG+NK    H +R 
Sbjct: 185 SDSIIPLLEKYVERYKPK--VYFIESRGKSIHPATVFRIVKRAAQRAGINKKIHPHTLRH 242

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
             AT           +    G   +     Y   AD+ +      +++
Sbjct: 243 SFATHLIMNNVNVKIVQELLGHANLSTTSIYLHVADKEK--FDAVKKL 288


>gi|126173817|ref|YP_001049966.1| phage integrase family protein [Shewanella baltica OS155]
 gi|125997022|gb|ABN61097.1| phage integrase family protein [Shewanella baltica OS155]
          Length = 451

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 52/289 (17%), Positives = 109/289 (37%), Gaps = 16/289 (5%)

Query: 48  MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKS 106
           + A      +     SPR         + +  K   +     +++ S     ++ ++   
Sbjct: 77  LQAWREEHAQPSMSASPR-----FDVFVEQTWKPMIFDHWKPSTKRSVLPALNRRLLAHF 131

Query: 107 GDFDYRKITTKHIRSGVESRKHTP-SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165
           G +    I  K +++  +    T   +A + L +++ +FK A+RQ +   NPC+ + + K
Sbjct: 132 GRYPLHMINHKMVQAWFDEISKTRKGAANRNLDTLQSVFKLALRQGHCLTNPCIGIRQNK 191

Query: 166 RKTEGIRPWTKEDMQQFKSFWSE-----GSQPRLA--FEFLLYSGLRCSDSCRAGVQHLQ 218
           R+    R  +  +MQ+      E     GS  + A     LL +G R S+      ++++
Sbjct: 192 RRV-LNRFLSVAEMQRLSVALDECEEVGGSIAQCADILRLLLLTGCRLSEITFLKGEYVR 250

Query: 219 NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKAT 278
            N   +   KTG  + + +    + +L+       T           +   S+W + +  
Sbjct: 251 GNELHLPDSKTGAKV-LYIGQAAVDILSRYHCKANTELFPMKLGASTSLVQSLWLRLRKQ 309

Query: 279 KAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
               +   H +R   A+ +   G +   + +  G K V     YT   D
Sbjct: 310 IGIEDVRLHDLRHTFASYAVMDGCSIPMVASLLGHKKVTMTLRYTHVGD 358


>gi|237809853|ref|YP_002894293.1| tyrosine recombinase XerC [Tolumonas auensis DSM 9187]
 gi|237502114|gb|ACQ94707.1| tyrosine recombinase XerC [Tolumonas auensis DSM 9187]
          Length = 309

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 39/278 (14%), Positives = 93/278 (33%), Gaps = 23/278 (8%)

Query: 70  TLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRK-------ITTKHIRS 121
           +L  ++  Y +       L+ ++  +++ +   +I    +   +        +  +   +
Sbjct: 4   SLSSVLHTYLEYLRVERQLSAHTLSNYQRHLQALIEWLQEKQIQDWGELNNPLVRQWAHT 63

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
             + +  +P +    ++++R    W V +  +A NP   V  PK      +    + + Q
Sbjct: 64  LRKHKDTSPRTISTKMSALRSFADWLVIRGILAANPARGVALPKLGRPLPKNLDVDQVHQ 123

Query: 182 FKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-- 235
             +   E      + R   E    +G+R S+     +  L      ++    G    +  
Sbjct: 124 LLNITDESDPLVVRDRAIMELFYSTGMRLSELVALDLNDLDMTSRQVRVIGKGNKERILP 183

Query: 236 -------ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSA 286
                   L        A    G+   F+++ K+++ A    I  +    K  +N     
Sbjct: 184 VGRLALEWLEKWLRTRTAFLLEGETALFLSSRKRRITARMVEIRIEQWGQKQTLNSHVHP 243

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           H +R   AT   ++      +    G   +   + YT 
Sbjct: 244 HKLRHSFATHMLESSGDLRAVQELLGHANLATTQIYTH 281


>gi|226314997|ref|YP_002774893.1| hypothetical protein BBR47_54120 [Brevibacillus brevis NBRC 100599]
 gi|226097947|dbj|BAH46389.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 290

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 43/280 (15%), Positives = 91/280 (32%), Gaps = 24/280 (8%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQI---------IRKSGDFDYRKITTKHIRSGVESRK 127
           +Y  S      +  +   ++                    D          +      R 
Sbjct: 15  QYLSS---IGRSEQTITGYKKDLSYFTRFLERKYNCEPYIDEVLVTDIEDFLLYLKTERA 71

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           + P+S  + L + R  F +A ++E+V+ N  LSVE+ K + +      + ++ +  S   
Sbjct: 72  YAPASRQRNLHTFRSFFAYAQKKEWVSRNIALSVEKIKVQQKERTYLEEAEVDELVSEID 131

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKLL 245
                RL    L  +G+R S+     V  +     +  +   K      + +    + +L
Sbjct: 132 HPL-IRLVVMVLYMTGMRISECLNLKVDEVKWDQQVIHVVAGKGNKDRFIPISPRLLPML 190

Query: 246 ------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS 297
                          FF      K++    +        + G +K  +AH +R   A+  
Sbjct: 191 KEYVLHHRPDSDSNRFFCTKKTGKLSPVYVNREITEAVKRLGWSKKVTAHILRHSFASQL 250

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKG-ADRIRLGIKNS 336
                   ++    G  +++    YT    D++R  I + 
Sbjct: 251 VKKDVNLVQIQKLLGHSSLNVTSVYTHTNLDQLRDAISHL 290


>gi|254446539|ref|ZP_05060015.1| tyrosine recombinase XerD [Verrucomicrobiae bacterium DG1235]
 gi|198260847|gb|EDY85155.1| tyrosine recombinase XerD [Verrucomicrobiae bacterium DG1235]
          Length = 309

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 49/274 (17%), Positives = 98/274 (35%), Gaps = 27/274 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESRKHTPSSAI---QFL 137
             L+ N+  +++S   Q +           ++K+T  H+   + +      S     + L
Sbjct: 20  KGLSDNTIENYQSDLSQFLAHVEKSSRVGSWKKLTASHVSDWIYALSEGDYSNASLCRKL 79

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPR 193
           +S+R L  + +R+  +  +    V  PK + +     + +++++  S        G + R
Sbjct: 80  SSLRSLDAYLMRERKIDKSFTEIVVGPKLRRKAPFTLSIQEVERLLSAPDLTTAQGLRDR 139

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM------ 247
              E    SGLR S+     +Q +   + ++K    G+   V  P G     A+      
Sbjct: 140 AMLELFYSSGLRVSELSGLMLQQIDLELGALKIYGKGSKERV-CPMGRKAATAIGDYLRN 198

Query: 248 ------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
                         F++     ++     +  +     AG++K    H +R   AT    
Sbjct: 199 GRPRFVKSKTGSAVFLSARGTAISRKTIWVLVRKYTKAAGIDKPVKPHMLRHSFATHLLT 258

Query: 300 AGATAHELMATYGWKTVDQAETYTK-GADRIRLG 332
            GA    +    G   +   + YT   ADR R  
Sbjct: 259 GGADLRIIQELLGHADIATTQIYTSVEADRTRSA 292


>gi|329667430|gb|AEB93378.1| putative integrase/recombinase [Lactobacillus johnsonii DPC 6026]
          Length = 307

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 42/279 (15%), Positives = 106/279 (37%), Gaps = 26/279 (9%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYF----DQIIRKSGDFDYRKITTKHIRSGVESR 126
             LI +++   ++  + + N+  S+ +      D      G   + ++ ++ +   +++ 
Sbjct: 6   DKLIKQFQDYLNYERNYSKNTVNSYLNDLIEAKDFFRENGGFSGWDQVKSRDVEIFLQNL 65

Query: 127 K---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
                + ++  + ++S+R  +++ V++E +  +P  ++     + +  + + +++M+Q  
Sbjct: 66  ATQNRSRTTQARKMSSLRSFYRFLVKREVLENDPMQTISLRLGEKKLPQFFYEKEMRQVF 125

Query: 184 SFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELP 238
              +       + R  FE    +G+R S+     +  +  +    +   K      V   
Sbjct: 126 DSLAGHEKLVVRNRAMFELFYATGMRLSEMASLKLDQIDFDLKIILVHGKGNKDRYVPFG 185

Query: 239 DGFMKLL-------AMTPIGKE----TFFINNDKQKMNATQFSIWFKAKATKAGVNKS-- 285
                 L        +  +GK       F+NN  QK+         +    KAGV     
Sbjct: 186 KDAASALKEYCDESRLALLGKNEDLGYVFLNNRGQKLTGRGIEYIMQQVFIKAGVGGKVH 245

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            H +R   AT   + GA    +    G +++   + YT 
Sbjct: 246 PHMLRHSFATEMLNNGADLRSVQELLGHESLSTTQIYTH 284


>gi|87309301|ref|ZP_01091437.1| integrase/recombinase [Blastopirellula marina DSM 3645]
 gi|87287940|gb|EAQ79838.1| integrase/recombinase [Blastopirellula marina DSM 3645]
          Length = 291

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 45/282 (15%), Positives = 97/282 (34%), Gaps = 25/282 (8%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT---KHIRSGVESRKH 128
               ++Y +S     LA N+  ++     +  R  G  + R +         + +   + 
Sbjct: 2   SAAFTDYLQSE--CHLAANTVAAYRRDLVRFERWLGAREIRTLRVGELSDYVAWLYKEEL 59

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-WS 187
            P+S  + + S+++ F++   +  +  N    +   K             +    +  WS
Sbjct: 60  APASIARAVVSLKIFFRYLQLEGILQDNLVELLGSQKIWRRIPSVIAPHKIDDLLTAPWS 119

Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE-------- 236
           E     + R   E L  +G R S+     +  +  +   +K +  G+   +         
Sbjct: 120 EDPYWRRDRALLEVLYATGCRASEVSGLRMDDVHLDEGYVKCEGKGSKQRIAPLAQKSAR 179

Query: 237 -----LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGV 289
                L +   +L           F++   ++++        K  A +AG++   S H +
Sbjct: 180 VVKTYLDEERPRLSKKNLRDAAFLFLSRSGKRLSRIAIWELVKKYAARAGIDPDVSPHSL 239

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           R   AT     GA    +    G  ++   + YT   D+ RL
Sbjct: 240 RHSFATHLLAGGADLRHVQEMMGHASIATTQIYTH-VDQSRL 280


>gi|289595770|ref|YP_003482466.1| integrase family protein [Aciduliprofundum boonei T469]
 gi|289533557|gb|ADD07904.1| integrase family protein [Aciduliprofundum boonei T469]
          Length = 270

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 36/182 (19%), Positives = 72/182 (39%), Gaps = 8/182 (4%)

Query: 159 LSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218
             +   K+K +     +++++++   + +   + RL   FL Y+G+R  +      + ++
Sbjct: 88  EEIPLAKKKEKLPVVLSRDEVKRMI-YGTHNIKHRLVLMFLYYAGMRLQEVRNIRWEDVE 146

Query: 219 --NNIFSIKTQKTGTIITVELPDGFMKLLAMTPI-GKETFFINNDKQKMNATQFSIWFKA 275
               I  IK  K      V L       L +     K   F++   +K +     +  K 
Sbjct: 147 FEREIIHIKVAKGDKERVVFLHPNLKNTLEIYGRKSKGYVFMSQRGKKYSPKSIQLIVKN 206

Query: 276 KATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR--IRL 331
            A +A +NK  + H +R   AT   + GA    +    G K +   + YT  A++   +L
Sbjct: 207 AARRAKINKNVTPHTLRHSFATHLLEGGADIRYIQQLLGHKHLKTTQIYTHVANKDIKKL 266

Query: 332 GI 333
             
Sbjct: 267 AQ 268


>gi|300721450|ref|YP_003710725.1| site-specific tyrosine recombinase [Xenorhabdus nematophila ATCC
           19061]
 gi|297627942|emb|CBJ88488.1| site-specific tyrosine recombinase [Xenorhabdus nematophila ATCC
           19061]
          Length = 304

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 42/260 (16%), Positives = 87/260 (33%), Gaps = 20/260 (7%)

Query: 85  GSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLT 138
             L+  +   +  +     +I  K G  +++ +   ++R  V   +      +S    L+
Sbjct: 23  RRLSPLTITHYRHHLTVLAEISLKIGISEWQALDPVNVRLFVSRSRRAGLESASIALRLS 82

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WSEGSQPRLA 195
           ++R    W V Q  +A NP   V  P++K    +    +++ Q  +         + R  
Sbjct: 83  ALRSFLDWMVMQGKLAANPAKMVSAPRKKRHLPKNMDVDEVNQLLNINLNDPLSVRDRTM 142

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLAMT------ 248
            E +  +GLR S+      + +  +        K      V       + L         
Sbjct: 143 LEVMYGAGLRLSELVGLNWRDVDLDSGDVWVRGKGSKERKVPFGRMAQEWLQRWLEMREL 202

Query: 249 --PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATA 304
             P     F  +   ++++A      F+    + GVN     H +R   AT   ++    
Sbjct: 203 FEPENDAVFISSKSGKRISARNVQKRFEQWGIRQGVNSHINPHKLRHSFATHILESSGDL 262

Query: 305 HELMATYGWKTVDQAETYTK 324
             +    G   +   + YT 
Sbjct: 263 RAVQELLGHANLSTTQIYTH 282


>gi|260596035|ref|YP_003208606.1| site-specific tyrosine recombinase XerC [Cronobacter turicensis
           z3032]
 gi|260215212|emb|CBA27069.1| Tyrosine recombinase xerC [Cronobacter turicensis z3032]
          Length = 306

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 45/259 (17%), Positives = 87/259 (33%), Gaps = 19/259 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVESRKH-TPSSAIQFLT 138
             L+  + +++E     I+  +G+   +             +    R    PSS    L+
Sbjct: 26  RQLSPVTLLNYERQLAAIVGLAGEAGLKSWAQCDAAMVRTLAVRSRRAGLGPSSLALRLS 85

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLA 195
           ++R  F W V Q  +  NP   V  PK      +    +D+ +            + R  
Sbjct: 86  ALRSFFDWQVSQGELKANPAKGVSTPKTPRHLPKNIDVDDVNRLLDIDLNDPLAVRDRAM 145

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT--------IITVELPDGFMKLLAM 247
            E +  +GLR S+      +HL      +     G+           V   D ++ L  +
Sbjct: 146 LEIMYGAGLRLSELVNIDCRHLDLASGEVWVMGKGSKERRLPIGRSAVAWIDHWLNLREL 205

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAH 305
                +  F++   ++++A      F     K G+N     H +R   AT   ++     
Sbjct: 206 FGPDDDALFLSKQGKRISARNVQKRFAEWGIKQGLNSHVHPHKLRHSFATHMLESSGDLR 265

Query: 306 ELMATYGWKTVDQAETYTK 324
            +    G   +   + YT 
Sbjct: 266 AVQELLGHANLSTTQIYTH 284


>gi|229552209|ref|ZP_04440934.1| site-specific recombinase XerD [Lactobacillus rhamnosus LMS2-1]
 gi|229314431|gb|EEN80404.1| site-specific recombinase XerD [Lactobacillus rhamnosus LMS2-1]
          Length = 298

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 80/235 (34%), Gaps = 23/235 (9%)

Query: 111 YRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170
              +  +   + +  +    +S  + ++S+R  +++ VR + V  NP   VE  K+    
Sbjct: 48  VDDLDVQTYLTDLNKQALARTSIARKISSLRSFYRYLVRIDVVKRNPFELVELKKQHHHL 107

Query: 171 IRPWTKEDMQQFKS----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIK 225
            + + + ++Q+             + R   E L  +G+R S+     +  +  N    + 
Sbjct: 108 PQFFYEAEIQELFKTVEGETPLDQRNRALLEVLYGTGIRVSECANLTLNQVDFNTGLLLI 167

Query: 226 TQKTGTIITVE------------LPDGFMKLLAMTPIGKETFFINNDKQKMNATQ----F 269
             K      V             L DG   L+          F+N   + + A       
Sbjct: 168 HGKGNKDRYVPFGRYAQRALQTYLKDGRQTLMNKHDAQHRFVFVNQYGRPITARGIEYIL 227

Query: 270 SIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
               K  +  A ++   H +R   AT   D GA    +    G  ++   + YT 
Sbjct: 228 DQLIKQTSLTANIH--PHMLRHSFATHMLDHGADLRTVQELLGHASLSTTQIYTH 280


>gi|163785285|ref|ZP_02179942.1| phage integrase family protein [Hydrogenivirga sp. 128-5-R1-1]
 gi|159879446|gb|EDP73293.1| phage integrase family protein [Hydrogenivirga sp. 128-5-R1-1]
          Length = 324

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 57/312 (18%), Positives = 106/312 (33%), Gaps = 21/312 (6%)

Query: 22  IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKS 81
           IYY     G++  L    +        + L     K + I     K   L   I EY   
Sbjct: 10  IYYVEFERGKKRSLK-TKDKALAQRLFNQLKREYLKGKIILLSEGKKIKLSEFIEEYL-- 66

Query: 82  AHW--GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH---IRSGVESRKHTPSSAIQF 136
             W   + +  +         ++   +GD   + +T KH     S + ++  + ++    
Sbjct: 67  -EWCRENRSDETFKKARYVLQKLKDHTGDIYIKALTKKHLDEYVSTLLAQGISRTTINIH 125

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196
           + +++     AV  EYV  +P    ++ K      R    ED+ + +    +       F
Sbjct: 126 IRTIKSALTKAVEWEYVQNHPLEGYKQLKVHQTPPRFLLPEDIAKVEKVIDDEFW-LFVF 184

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT--IITVELPDGFM-KLLAMTPIGKE 253
              +Y+G+R  +  +   +H+  N   IK +KT T     + +      +L A TP   +
Sbjct: 185 RLFVYTGMRLGEIHKLRWKHIDLNRNVIKVEKTKTFQSRVIPIHPKLRAELEARTPAMGK 244

Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYG 312
                               K    KAG  +   H +R   A++   AG     +    G
Sbjct: 245 VV-------PYAKPTIEHKLKNCFKKAGFKDLRIHDLRHTFASLMVMAGVDLKTVQELLG 297

Query: 313 WKTVDQAETYTK 324
            ++    E Y  
Sbjct: 298 HQSYRTTEIYAH 309


>gi|30020683|ref|NP_832314.1| DNA integration/recombination/invertion protein [Bacillus cereus
           ATCC 14579]
 gi|31415821|ref|NP_852561.1| DNA integration/recombination/invertion protein [Bacillus phage
           phBC6A52]
 gi|229127965|ref|ZP_04256949.1| DNA integration/recombination/invertion protein [Bacillus cereus
           BDRD-Cer4]
 gi|29896235|gb|AAP09515.1| DNA integration/recombination/invertion protein [Bacillus cereus
           ATCC 14579]
 gi|228655527|gb|EEL11381.1| DNA integration/recombination/invertion protein [Bacillus cereus
           BDRD-Cer4]
          Length = 369

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 47/312 (15%), Positives = 109/312 (34%), Gaps = 38/312 (12%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE 124
               TLK  ++ + +     S+  ++   ++++ +  +I   G     K+   HI+   +
Sbjct: 60  PSKVTLKDYLNHWLEIKS-MSIEKSTFAGYKAFINQHVIPSIGMVTLHKLNVIHIQKCYK 118

Query: 125 SRKHTPSSAIQFLTSMRVL---FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
           +      +    L   R+L      AV+Q  ++ NP    E PK++   I+ WT+E++++
Sbjct: 119 TAIDKGIANNSILLMHRILKSALNLAVKQNIISRNPADFAEIPKKEKTPIQTWTEEEVKK 178

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--------------NNIFSIKTQ 227
           F +  S+ S+  + +   + +G+R  +      Q +               +N      +
Sbjct: 179 FLA-HSQESRYHIGYLLAITTGMRLGEVLGLRWQDIDFEKHTVTINQTSGHDNKIKKTAK 237

Query: 228 KTGTIITVELPDGFMKLLAMTPI--------------GKETFFINNDKQKMNATQFSIWF 273
              +  T+ +P+  +  L    I               ++    N   + +    F   F
Sbjct: 238 TNSSKRTIPVPNETIAALKKHKILINKEKLRFGSAYLDQDLINCNEFGRIIKRAHFRKSF 297

Query: 274 KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRL 331
                K G+ +   H +R   AT+    G     +    G   +      Y+       +
Sbjct: 298 IRMTHKVGIKEIKFHDLRHTHATLLLKQGVNPKIISERLGHTDISMTLSVYSHVL--PNM 355

Query: 332 GIKNSRRISSVV 343
             +  +     +
Sbjct: 356 QEEAVKNFGKSI 367


>gi|325141563|gb|EGC64029.1| tyrosine recombinase XerC [Neisseria meningitidis 961-5945]
 gi|325197634|gb|ADY93090.1| tyrosine recombinase XerC [Neisseria meningitidis G2136]
          Length = 305

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 36/278 (12%), Positives = 85/278 (30%), Gaps = 24/278 (8%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD-------YRKITTKHIRSGV 123
                  Y ++      + ++  ++    +++                + ++ +   + +
Sbjct: 6   FAAHFDAYLENIVREGKSEHTVAAYRRDLEELFALLAQMPSEDAGGVPQDLSRRDFTAAL 65

Query: 124 ES---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                R     +  + L+S R    W V +  +  +P   ++ PK+     +  ++E + 
Sbjct: 66  RRLSQRGLNARTLARKLSSWRQYCVWLVERGLLHTDPTADIKPPKQPERVPKALSQEWLN 125

Query: 181 QFKSF-----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIIT 234
           +              +    FE +  SGLR S+        +  +   +     G     
Sbjct: 126 RMLDLPVDGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGKGRKQRQ 185

Query: 235 VELP----DGFMKL--LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK--AGVNKSA 286
           V L     +       L  T    +  F   +  +++  Q        A +   G + S 
Sbjct: 186 VPLTGKSVEALKNYLPLRQTASDGKALFTGRNGTRLSQRQIQKRLAQWAAQNGDGRHVSP 245

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           H +R   A     A      +    G  ++   + YTK
Sbjct: 246 HMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTK 283


>gi|308173576|ref|YP_003920281.1| site-specific tyrosine recombinase [Bacillus amyloliquefaciens DSM
           7]
 gi|307606440|emb|CBI42811.1| site-specific tyrosine recombinase for chromosome partitioning
           [Bacillus amyloliquefaciens DSM 7]
 gi|328553491|gb|AEB23983.1| site-specific tyrosine recombinase XerC [Bacillus amyloliquefaciens
           TA208]
 gi|328911717|gb|AEB63313.1| site-specific tyrosine recombinase for chromosome partitioning
           [Bacillus amyloliquefaciens LL3]
          Length = 305

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 39/276 (14%), Positives = 95/276 (34%), Gaps = 27/276 (9%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV------ESRK 127
           L  EY +     + +  + +++ +  ++        +   +                 + 
Sbjct: 11  LFVEYLQIE--KNYSQYTIVNYVNSIEEFGMFLHAQNINGLNEAAYHDVRIFLTEAYEKG 68

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-- 185
            +  +  + ++++R  +K+ +R++ V  NP   V  PK++    +   ++++++  +   
Sbjct: 69  LSRKTISKKISALRSFYKFLMREKLVEENPFQLVHLPKQEKRIPKFLYEKELEELFAVSD 128

Query: 186 --WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----------- 232
                G + +   E L  +G+R S+ C   V  L   + ++     G             
Sbjct: 129 RSQPSGMRDQALLELLYATGMRVSECCTLTVSDLDLFMDTVLVHGKGRKQRYIPFGSYAR 188

Query: 233 --ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG--VNKSAHG 288
             + + +  G   LL       +  F+N     + A            KA   ++   H 
Sbjct: 189 DALELYINSGRQCLLEKAKEPHDVLFVNQRGGPLTARGIRYILSGLVKKASGTLHIHPHM 248

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +R   AT   + GA    +    G   +   + YT 
Sbjct: 249 LRHTFATHLLNEGADLRSVQELLGHSNLSSTQIYTH 284


>gi|296330829|ref|ZP_06873304.1| site-specific tyrosine recombinase XerC [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305674347|ref|YP_003866019.1| site-specific tyrosine recombinase for chromosome partitioning
           [Bacillus subtilis subsp. spizizenii str. W23]
 gi|296151834|gb|EFG92708.1| site-specific tyrosine recombinase XerC [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305412591|gb|ADM37710.1| site-specific tyrosine recombinase for chromosome partitioning
           [Bacillus subtilis subsp. spizizenii str. W23]
          Length = 304

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 36/219 (16%), Positives = 79/219 (36%), Gaps = 19/219 (8%)

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
            +  +  +  + ++++R  +K+ +R++ V  NP   V  PK++    +   ++++++   
Sbjct: 65  EKGLSRRTISKKISALRSFYKFLMREKLVEENPFQLVHLPKQEKRIPKFLYQKELEELFE 124

Query: 185 F----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-------- 232
                   G + +   E L  +G+R S+ C   V  +   + ++     G          
Sbjct: 125 VSDISQPTGMRDQALLELLYATGMRVSECCSITVNDVDLFMDTVLVHGKGKKQRYIPFGS 184

Query: 233 -----ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG--VNKS 285
                + V +  G   LL       +  F+N     + A            KA   ++  
Sbjct: 185 YAREALKVYMNSGRQCLLMKAKEPHDLLFVNQRGGPLTARGIRHILSGLVQKASGTLHIH 244

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            H +R   AT   + GA    +    G   +   + YT 
Sbjct: 245 PHMLRHTFATHLLNEGADLRSVQELLGHSNLSSTQIYTH 283


>gi|124514259|gb|EAY55773.1| putative phage integrase family protein [Leptospirillum rubarum]
          Length = 314

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 48/288 (16%), Positives = 96/288 (33%), Gaps = 25/288 (8%)

Query: 71  LKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVE 124
           ++ L+  + +        + ++  ++        R  G+      D+      H  +  E
Sbjct: 5   VRDLLDAFEEDLRVASGRSPHTTQAYLLDLFAFARFLGEHGLSLLDFSPEDVTHYFAHRE 64

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----Q 180
                  S  + L+++R   ++  R+   AI+P  ++  P+          +E++    +
Sbjct: 65  DLA--MRSRSRVLSAIRSWSRFLKRRGLPAIDP-DTLPVPRLPRNLPGVLDEEEILRLLE 121

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
                  EG + R        SGLR S+     +  L  N   I+    G    V   DG
Sbjct: 122 APDPKTDEGIRDRAILATFYASGLRVSELAELTLDRLNLNEEQIRVTGKGQKERVAFLDG 181

Query: 241 F---------MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289
                      ++   T   ++T F+   +         +  K  A + G+++S   H +
Sbjct: 182 LSCARLKLYLERVRPSTNTAEKTLFLTRRQTGFTRQGLWLLIKGYARQCGIDRSVSPHTL 241

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
           R   AT     G     +    G   +   E YT   D   L    ++
Sbjct: 242 RHSFATHLLSHGMDIRSIQILLGHSDIQTTEIYTH-VDIRMLAEDLAK 288


>gi|293393894|ref|ZP_06638201.1| tyrosine recombinase XerC [Serratia odorifera DSM 4582]
 gi|291423721|gb|EFE96943.1| tyrosine recombinase XerC [Serratia odorifera DSM 4582]
          Length = 304

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 44/259 (16%), Positives = 92/259 (35%), Gaps = 19/259 (7%)

Query: 85  GSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIR--SGVESRKHTPSSAIQF-LT 138
             L+  ++IS+      +I    + G  ++R++    +R  +    R    SS++   L+
Sbjct: 24  RQLSPLTQISYSRQLQALIALAAELGVSEWRQLDAVTVRQLAARSKRAGLQSSSLALRLS 83

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLA 195
           ++R    W V Q  +  NP   +  P+      +    ++M Q            + R  
Sbjct: 84  ALRSFLDWLVSQGQIVANPAKGIRTPRSGRHLPKNIDVDEMGQLLEIDLNDPLAVRDRAM 143

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT--------IITVELPDGFMKLLAM 247
            E +  +GLR S+      +H+      +     G+           V     ++ L  +
Sbjct: 144 LEVMYGAGLRLSELVGLDCRHVDMAAGEVWVMGKGSKERKLPIGRTAVTWLGHWLALREL 203

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAH 305
              G +  F++N  ++++       F     K GV  +   H +R   AT   ++     
Sbjct: 204 FAPGDDAMFLSNQGKRISPRNVQKRFAEWGVKQGVSSHIHPHKLRHSFATHMLESSGDLR 263

Query: 306 ELMATYGWKTVDQAETYTK 324
            +    G   +   + YT 
Sbjct: 264 AVQELLGHANLTTTQIYTH 282


>gi|119776379|ref|YP_929119.1| integrase/recombinase XerC [Shewanella amazonensis SB2B]
 gi|171704602|sp|A1SAP3|XERC_SHEAM RecName: Full=Tyrosine recombinase xerC
 gi|119768879|gb|ABM01450.1| integrase/recombinase XerC [Shewanella amazonensis SB2B]
          Length = 296

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 32/271 (11%), Positives = 93/271 (34%), Gaps = 22/271 (8%)

Query: 72  KWL--ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI---RSGVESR 126
            WL   + Y  +     L+  +  ++    ++     G   +++++ + +    + +  +
Sbjct: 6   SWLERFTRYLATER--QLSPMTVRNYRFELERADTLLGQRSWQQLSRQDLSGLMARLHRQ 63

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             +P S     ++++   ++ +++  +  NP  ++  PK+     +    + +       
Sbjct: 64  GLSPRSLSLTASALKQFGQFLLKEGLIDTNPAATLSAPKQSKTLPKNLDPDSVNHLLDIP 123

Query: 187 SE---GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-------- 235
            E     + +   E     GLR ++     V+ L      ++    G+   +        
Sbjct: 124 PEDGLALRDKAIMELFYSCGLRLAELAALDVKDLDRESREVRVIGKGSKERILPVGSVAL 183

Query: 236 -ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKF 292
             + D   K+    P   +  F+++   +++        +  A   G+      H +R  
Sbjct: 184 AAIGDWL-KVRNQMPCQDDALFVSSRGSRLSHRSIQARMEKWAQIQGLSVGVHPHKLRHS 242

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYT 323
            AT   ++      +    G   +   + YT
Sbjct: 243 FATHMLESSGDLRAVQELLGHANLATTQIYT 273


>gi|77463394|ref|YP_352898.1| integrase/recombinase XerD [Rhodobacter sphaeroides 2.4.1]
 gi|77387812|gb|ABA78997.1| Probable integrase/recombinase XerD [Rhodobacter sphaeroides 2.4.1]
          Length = 311

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 54/287 (18%), Positives = 103/287 (35%), Gaps = 33/287 (11%)

Query: 74  LISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGV---ESRK 127
            IS + ++ A     A N+R+++           G    D+   T   + + +   E++ 
Sbjct: 9   WISAFLEAQAAELDAARNTRLAYGRDLKDYATWLGRRSEDFLTATRDTVEAYLTFCEAQG 68

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF-KSFW 186
            + ++  + L+S+R L+++   + + A NP + +  P R     +    E++ +  ++  
Sbjct: 69  LSSATRARRLSSIRQLYRFGHEEGWRADNPAIRISGPGRSKRLPKTLEIEEVDRLLEAAR 128

Query: 187 SEGSQP------RLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPD 239
            +G +       R   E L  +G+R S+     V   + N    +   K G    V L  
Sbjct: 129 DKGRRAEDQIRNRCLLELLYATGMRVSEMVGLPVAAARGNPRMILVRGKGGKERMVPLSP 188

Query: 240 GFMKLLA----------------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
              + LA                  P  +  F  +     +    F +  K  A  AGV+
Sbjct: 189 PAREALADWLRARDAAEAQGQKAGRPASRFLFPGSGAAGHLTREYFYVLVKQIAVLAGVD 248

Query: 284 ---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
               + H +R   AT     GA    +    G   +   E YT   D
Sbjct: 249 PAKVTPHTLRHAFATHLLAGGADLRVIQTLLGHADLSTTEIYTHVLD 295


>gi|294674799|ref|YP_003575415.1| tyrosine recombinase XerC [Prevotella ruminicola 23]
 gi|294473941|gb|ADE83330.1| tyrosine recombinase XerC [Prevotella ruminicola 23]
          Length = 292

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 44/275 (16%), Positives = 101/275 (36%), Gaps = 24/275 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIR----KSGDFDYRKITTKHIRSGVESRKH 128
           +I+++     +  + +  +  ++E            +  +     + T  IR  +ES   
Sbjct: 1   MINQFLDYLRYERNTSPLTVQTYEESLRDFESYVTFRDKELSISSVDTDLIRDWMESLMD 60

Query: 129 TPSSA---IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS- 184
             +SA    + L+++R  +++A++++ V  +P  +V  PK+     +   + +M +    
Sbjct: 61  KGNSASTINKKLSALRSFYRFALKRQLVKTDPAHAVIGPKKSKPLPQFLREGEMDRLIDG 120

Query: 185 -FWSE---GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPD 239
             W       + R        +GLR ++      + +  +   +K T K      V    
Sbjct: 121 IEWDSSFNNVRARTILLLFYEAGLRRAELVSLNDKDVDFDAAQLKVTGKRNKQRIVPFGA 180

Query: 240 GFMKLLAMTPIGKE--------TFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSAHGV 289
              + L      +           F+++  Q+++ +Q     K       +   +S H +
Sbjct: 181 ELAEALKQYQTARNEQFGETGGALFLSDKGQRISDSQVYQIVKKYLSMVTSLKKRSPHVL 240

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           R   AT   + GA    + +  G  +V   E YT 
Sbjct: 241 RHTFATAMLNNGAGLETIKSLLGHASVSTTEIYTH 275


>gi|291558084|emb|CBL35201.1| Site-specific recombinase XerD [Eubacterium siraeum V10Sc8a]
          Length = 476

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 50/316 (15%), Positives = 111/316 (35%), Gaps = 39/316 (12%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFE-SYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
               I  + ++    +L + +R  +E   ++ II + G     +++   ++      K  
Sbjct: 74  FGDWIDFWYQTYCRHTLRITTRTDYENRIYNHIIPEIGKIPLNRLSQSDLQQFYAKEKTD 133

Query: 130 PSS----------AIQFLTSM----RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
                        + + +  +    R   + AV++  +  NP +  + P +K   ++  T
Sbjct: 134 GRKLHAKTYGKGLSDRTIRGIHANCRTALQRAVQEGLIRTNPAVGCKLPPKKAREMQVLT 193

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH----------------LQN 219
           + ++ +F     E     L F   L +G+R  +                        ++ 
Sbjct: 194 QNEIIRFLHQAKEEGYYEL-FLLELGTGMRRGEILALKWSDLNFATGELRIGRQVYIIKA 252

Query: 220 NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI----NNDKQKMNATQFSIWFKA 275
            +     +   +I TV LP   +K LA+     ++ ++     ++ +  N +      + 
Sbjct: 253 EVIISAPKTKASIRTVILPPSLIKTLAVYKETVDSEWMFPSPTDNGRPRNPSSVRKRLQL 312

Query: 276 KATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADR-IRLG 332
              +AG  K   H +R   AT++ + G     L AT G  +     + Y+   D   R  
Sbjct: 313 ILERAGCKKVRFHDLRHTFATMALEHGMDVKTLSATIGHVSSATTLDIYSHITDTMQRQA 372

Query: 333 IKNSRRISSVVDSDDP 348
             +  R     D+  P
Sbjct: 373 AVHIDRKIGGTDAQMP 388


>gi|253988421|ref|YP_003039777.1| site-specific tyrosine recombinase XerC [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|253988443|ref|YP_003039799.1| site-specific tyrosine recombinase XerC [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|253990479|ref|YP_003041835.1| site-specific tyrosine recombinase XerC [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|211638830|emb|CAR67446.1| probable integrase/recombinase [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|211638952|emb|CAR67567.1| probable integrase/recombinase [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253779871|emb|CAQ83032.1| putative phage integrase/recombinase [Photorhabdus asymbiotica]
 gi|253779893|emb|CAQ83054.1| Phage integrase [Photorhabdus asymbiotica]
 gi|253781929|emb|CAQ85093.1| phage integrase [Photorhabdus asymbiotica]
          Length = 340

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 40/296 (13%), Positives = 92/296 (31%), Gaps = 32/296 (10%)

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR--------KSGDFDYRKI 114
            P     TL+  +  Y +       +  +  ++  +    +          +       +
Sbjct: 4   QPTFTLATLRQQLEAYLEIQTASGHSTRTPETYREWLTPFVDWCEMRAVYHAPQVSLPLL 63

Query: 115 TTKHIRSGVESRKHTPSSAIQ----FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170
            +         +              L  +R  F+W +++ ++  NP   +  PK +   
Sbjct: 64  ESWQRYLRRYRKADGQHYGNNSQLQRLRCLRGWFRWLLQRHHILYNPADMLILPKEEQRL 123

Query: 171 I-RPWTKEDMQQ----FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFS 223
             +  +  + +Q      +    G + R   E L  +G+R ++     +  +     +  
Sbjct: 124 PAQVLSDVETEQVLNSLDTQTPLGLRNRAVLEALWSTGIRRTELINLRLGDIDRHRGVVV 183

Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIG----------KETFFINNDKQKMNATQFSIWF 273
           ++  K G    V + +  +  L                    FI      ++    +   
Sbjct: 184 VRQGKNGHDRVVPIGERALAWLERYLADVRPQLAYRYDSGYVFITVRGNPLSRNTLTQMA 243

Query: 274 KA-KATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
                 +A ++K  S H  R   AT   + GA    + A  G K ++  + YT+ A
Sbjct: 244 GHTIREEAKLDKAGSCHVFRHSMATQMLENGADTRHIQAILGHKKLETTQIYTRVA 299


>gi|269956359|ref|YP_003326148.1| tyrosine recombinase XerD [Xylanimonas cellulosilytica DSM 15894]
 gi|269305040|gb|ACZ30590.1| tyrosine recombinase XerD [Xylanimonas cellulosilytica DSM 15894]
          Length = 331

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 44/307 (14%), Positives = 86/307 (28%), Gaps = 44/307 (14%)

Query: 61  INSPRKKPTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDF---------- 109
                     L+  + +Y         L+ N+  ++     + +R               
Sbjct: 6   APPGVVVSGPLEAALDDYLAHLRVERGLSHNTTAAYRRDLARYVRHLERLGRTSLGAVRE 65

Query: 110 -DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168
            D     T          + + SS  + L ++R   ++A  +     +P   V  P +  
Sbjct: 66  DDVTGFVTAVREGADGGARLSASSTARALAAVRGWHRFAHAEGLATQDPAAEVRAPTQLR 125

Query: 169 EGIRPWTKEDMQQFKSFW-----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL------ 217
                 + + + +              + R   E L  +G R S+     V  L      
Sbjct: 126 RLPHALSVDAVTRLLDAAGVGDGPVPLRDRALLELLYSTGGRISEVVGLDVDALGWLGAG 185

Query: 218 --------QNNIFSIKTQKTGTIITV------------ELPDGFMKLLAMTPIGKETFFI 257
                    +    ++    G    +                     LA    G    F+
Sbjct: 186 SAPGDGAGDDGPAVVRLHGKGDKQRIVPVGSYAIAALDAYLVRARPALAAAGSGTPALFL 245

Query: 258 NNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTV 316
           N   + ++        +A + +AG+ N S H +R   AT     GA    +    G  +V
Sbjct: 246 NTRGRPLSRQSAWAVLQAASARAGLENVSPHTLRHSFATHLLQGGADVRVVQELLGHASV 305

Query: 317 DQAETYT 323
              + YT
Sbjct: 306 TTTQIYT 312


>gi|325912006|ref|ZP_08174408.1| putative tyrosine recombinase XerC [Lactobacillus iners UPII 143-D]
 gi|325476191|gb|EGC79355.1| putative tyrosine recombinase XerC [Lactobacillus iners UPII 143-D]
          Length = 307

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 35/279 (12%), Positives = 97/279 (34%), Gaps = 26/279 (9%)

Query: 72  KWLISEYRKS-AHWGSLAVNSRISFESYFDQ----IIRKSGDFDYRKITTKHIR---SGV 123
              +  Y     +  + ++N+  ++     +     +   G  D+ K++++ I      +
Sbjct: 5   DDFLKLYYNYLKNERNYSINTCKAYMDDLSEARTFFVENGGFIDWLKLSSRDIEIFIQYL 64

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
             +K   S+  + ++++R  +++  ++  + +NP   +       +       ++M +  
Sbjct: 65  AQKKDKRSTQSRKISTLRSFYRFLNKRNIIPVNPVELISLRGDHKKLPEFLYSDEMVKVL 124

Query: 184 S----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKT-------G 230
                    G +     E    +G+R S+     +  +    N+  +  +         G
Sbjct: 125 KSISTTTPLGLRNMALLELFYATGMRVSEISNLKLDQIDFELNLILVHGKGNKDRYVAFG 184

Query: 231 TIITVELPDGFMKLLAMT---PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS-- 285
                 L +  ++               F+N++  ++ +       K     AG++ S  
Sbjct: 185 EEAKTALNNYLVEARKKLLLHKTDYGYVFLNSNGNRITSRGLEYIIKNIFLNAGISASVH 244

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            H +R   AT   + GA    +    G +++   + YT 
Sbjct: 245 PHMLRHTFATQMLNNGADLRTVQELLGHESISTTQIYTH 283


>gi|255011626|ref|ZP_05283752.1| putative site-specific recombinase [Bacteroides fragilis 3_1_12]
 gi|313149461|ref|ZP_07811654.1| integrase [Bacteroides fragilis 3_1_12]
 gi|313138228|gb|EFR55588.1| integrase [Bacteroides fragilis 3_1_12]
          Length = 293

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 44/275 (16%), Positives = 102/275 (37%), Gaps = 24/275 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYF----DQIIRKSGDFDYRKITTKHIRSGV---ES 125
           L   +     +  + +  + +++        + +  + G+F+  ++  + IR  +     
Sbjct: 2   LADSFLDYLRYERNYSEKTVLAYGEDISQLQEFVQEEIGEFNPLEVKPELIREWIVSLMD 61

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           R +T +S  + L+S+R  +K+ +RQ  V+++P   +  PK K        + +M +    
Sbjct: 62  RGYTSTSVNRKLSSLRSFYKYLLRQGEVSVDPLRKITGPKNKKPLPSFLKESEMNKLLDD 121

Query: 186 WS-----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPD 239
                  +G + RL  E    +G+R S+      + +  +   +K T K      +   D
Sbjct: 122 TDFGEGFKGCRDRLIIEVFYATGMRLSELIGLDDKDVDFSASLLKVTGKRNKQRLIPFGD 181

Query: 240 GFMKLL--------AMTPIGKETFFINNDKQKMNATQFSIWFKA--KATKAGVNKSAHGV 289
              + +         +  +  + FF+  + +++         K           +S H +
Sbjct: 182 ELKEAMFEYVDVRNKVISVKSDAFFVRENGERLYKNLVYNLVKRNLSKVVTLKKRSPHVL 241

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           R   AT   +  A    +    G  ++   E YT 
Sbjct: 242 RHTFATTMLNNDAELGAVKELLGHSSLATTEIYTH 276


>gi|227325794|ref|ZP_03829818.1| site-specific tyrosine recombinase XerC [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 311

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 48/285 (16%), Positives = 100/285 (35%), Gaps = 22/285 (7%)

Query: 62  NSPRKKPTT--LKWLISEYRKSAH-WGSLAVNSRISFESYFDQ---IIRKSGDFDYRKIT 115
            +P + P++  L+  +  + +       L+  ++ S+         I+  +G  D+R++ 
Sbjct: 5   PAPSEAPSSSPLQTDVDAFLRYLKVERQLSPLTQTSYLRQLSAVITILSAAGVADWRRLD 64

Query: 116 TKHIRSGVESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
              +RS V   K      SS    L+++R    W V +  +  NP   V  P+      +
Sbjct: 65  ASGVRSVVSRSKRDGLHSSSLALRLSALRSFLDWMVSRGVLVANPAKGVSTPRAGRPLPK 124

Query: 173 PWTKEDMQQFKSF---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229
               ++  +            + R   E +  +GLR ++      QH+      I     
Sbjct: 125 NMDVDETNRLLEINLDDPLAVRDRTMLEVMYGAGLRLAELVGMDYQHIDLASGEIWVMGK 184

Query: 230 GTI--------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281
           G+           V   + ++ L  +     +  FI+N  ++++       F     K G
Sbjct: 185 GSKERKLPIGKTAVTWLERWLALRELFGPQDDAVFISNQGRRISMRNVQKRFAEWGIKQG 244

Query: 282 VN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +N     H +R   AT   ++      +    G   +   + YT 
Sbjct: 245 INSHVHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTH 289


>gi|116751213|ref|YP_847900.1| phage integrase family protein [Syntrophobacter fumaroxidans MPOB]
 gi|116700277|gb|ABK19465.1| phage integrase family protein [Syntrophobacter fumaroxidans MPOB]
          Length = 304

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 44/270 (16%), Positives = 88/270 (32%), Gaps = 28/270 (10%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE---------SRKHTPSSAI-- 134
             A  +  ++      + R +G+     +        ++           +  P SA   
Sbjct: 25  GRATATIAAYRRDLALVARVAGELAPGIVCRAVTAGFLDQVFSAGAVTESERGPRSAASL 84

Query: 135 -QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS--- 190
            +   ++R  F WAV    V  NP  S+   +   +     T  + ++        +   
Sbjct: 85  HRMKAAVRAFFAWAVEVGVVDDNPARSIRMQRLPRKLPVFLTTAEKKRLLKELKGRTDFS 144

Query: 191 --QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE---------LPD 239
             + R   E LL +G+R  +     +  +  +   ++ +  G +  V+         L  
Sbjct: 145 ALRDRAMIEVLLGTGIRLGELAALDMDDIDLDAKHLRVRAKGNVPQVKFIKTDLRTLLRR 204

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS 297
              +         E  F++N   ++   Q +        KAG+ K  + HG+R   AT  
Sbjct: 205 YLAERRRHGRPEMEALFLSNRDGRLCQRQIANRLAHWLRKAGIEKELTPHGLRHTFATHL 264

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGAD 327
             A      +    G + V   + YT   D
Sbjct: 265 YGATNDLLVVQRALGHRDVSTTQIYTHLVD 294


>gi|28899755|ref|NP_799360.1| site-specific tyrosine recombinase XerC [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|153838746|ref|ZP_01991413.1| tyrosine recombinase XerC [Vibrio parahaemolyticus AQ3810]
 gi|260878123|ref|ZP_05890478.1| tyrosine recombinase XerC [Vibrio parahaemolyticus AN-5034]
 gi|260895820|ref|ZP_05904316.1| tyrosine recombinase XerC [Vibrio parahaemolyticus Peru-466]
 gi|260900847|ref|ZP_05909242.1| tyrosine recombinase XerC [Vibrio parahaemolyticus AQ4037]
 gi|81726659|sp|Q87KJ6|XERC_VIBPA RecName: Full=Tyrosine recombinase xerC
 gi|28808007|dbj|BAC61244.1| integrase/recombinase XerC [Vibrio parahaemolyticus RIMD 2210633]
 gi|149747832|gb|EDM58716.1| tyrosine recombinase XerC [Vibrio parahaemolyticus AQ3810]
 gi|308087191|gb|EFO36886.1| tyrosine recombinase XerC [Vibrio parahaemolyticus Peru-466]
 gi|308092778|gb|EFO42473.1| tyrosine recombinase XerC [Vibrio parahaemolyticus AN-5034]
 gi|308110579|gb|EFO48119.1| tyrosine recombinase XerC [Vibrio parahaemolyticus AQ4037]
          Length = 310

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 36/278 (12%), Positives = 93/278 (33%), Gaps = 21/278 (7%)

Query: 68  PTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV--- 123
           P +L+  +  + +       L+++++ +++   + + +   +   +  +           
Sbjct: 10  PNSLQKPLERFYEFLRSEKGLSLHTQRNYKQQLETMAQHLAEMGLKDWSQVDAGWVRQLA 69

Query: 124 ---ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                     SS    L+S+R  F + + +  ++ NP   V  P++K    +    +++ 
Sbjct: 70  GKGMREGMKASSLATRLSSLRSFFDFLILRGEMSANPAKGVSAPRKKRPLPKNLDVDEVN 129

Query: 181 QFKSF---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE 236
           Q            + R   E +  +GLR ++     V+ +Q     ++   K      V 
Sbjct: 130 QLLEVNEDDPLAIRDRAMMELMYGAGLRLAELVSVDVRDVQLRSGELRVIGKGDKERKVP 189

Query: 237 --------LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286
                   +         +   G+   F++    +++             K  V  + S 
Sbjct: 190 FSGMATEWVGKWLRVRGDLAAPGEPALFVSKLGTRISHRSVQKRMAEWGQKQSVASHISP 249

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           H +R   AT   ++      +    G + +   + YT 
Sbjct: 250 HKLRHSFATHMLESSNNLRAVQELLGHENISTTQIYTH 287


>gi|85858465|ref|YP_460667.1| integrase family protein [Syntrophus aciditrophicus SB]
 gi|85721556|gb|ABC76499.1| integrase family protein [Syntrophus aciditrophicus SB]
          Length = 421

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 50/309 (16%), Positives = 102/309 (33%), Gaps = 23/309 (7%)

Query: 49  SALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF--DQIIRKS 106
            A      K+  +    K+  T      +Y K  ++  +A       E +     I    
Sbjct: 97  KARKQEEAKQAEVEKKEKESITFG----KYFKDTYFPDMAHKKSKDVEQFIYDKWICPLI 152

Query: 107 GDFDYRKITTKHIRSGVESRKHT---PSSAIQFLTSMRVLFKWAVRQEYVAIN-PCLSVE 162
           G      +T  H++   ++ + +     +       +  ++  A + + V  + P   V+
Sbjct: 153 GKLRINDLTDFHLKKIKKNMEDSGKAVRTIHYAFAIVSQVWNRARKDKIVQRDCPTRDVK 212

Query: 163 RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE-FLLYSGLRCSDSCRAGVQ--HLQN 219
            P+   +  R  + ++     ++    S+         LY+G R  +      +  +L++
Sbjct: 213 LPRIDNQKKRFLSPQEANDLLAYLKNKSRQLYELAYLSLYTGARFGELAGLTWRRINLKD 272

Query: 220 NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK 279
                +  K+G   TV + +G   L    P GK    I  D++       S  F      
Sbjct: 273 GSIIFRNTKSGKDRTVFMTEGVKALFEAMPEGKADDLIFPDRKGKRLFSVSATFDRAIAD 332

Query: 280 AGVNK---------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRI 329
            G+NK         + H +R   A+   + G     +    G         Y+   AD I
Sbjct: 333 LGLNKGVVDPRDKITFHSLRHTHASWLVNNGTNLFLVKEILGHADFKMTTRYSHPAADSI 392

Query: 330 RLGIKNSRR 338
           R  +    +
Sbjct: 393 RQAMVGLEK 401


>gi|295706292|ref|YP_003599367.1| tyrosine recombinase XerC [Bacillus megaterium DSM 319]
 gi|294803951|gb|ADF41017.1| tyrosine recombinase XerC [Bacillus megaterium DSM 319]
          Length = 300

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 40/236 (16%), Positives = 89/236 (37%), Gaps = 20/236 (8%)

Query: 115 TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
             +   + +  ++++  S  + ++ +R  +++  R+E V  NP   V  PK++    R  
Sbjct: 55  DARLFLTRLYEKQYSKRSMSRKISCLRTFYRYLNREELVEDNPFALVTLPKKEERNPRFL 114

Query: 175 TKEDMQQFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
            +E++ +           G + +   E L  +G+R S+     +  +  ++ ++     G
Sbjct: 115 YEEEIVKLFQMNDLTTPLGQRNQSLLELLYATGIRVSECSSIKLSDIDFSLQTLLVYGKG 174

Query: 231 TI-------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKA-- 275
                          + V + +G   LL   P    + F+N     +      +      
Sbjct: 175 KKQRYVPFGCYAKGALRVYIDNGRKLLLKKAPSDTHSLFLNYKGTPLTDRGIRLVIDQLV 234

Query: 276 KATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330
           K T   ++ S H +R   AT   + GA    +    G + +   + YT    DR++
Sbjct: 235 KKTAENIHISPHVLRHTFATHMLNEGADLRTVQEMLGHEHLSTTQIYTHVTKDRLK 290


>gi|309804146|ref|ZP_07698224.1| putative tyrosine recombinase XerC [Lactobacillus iners LactinV
           11V1-d]
 gi|315653524|ref|ZP_07906445.1| tyrosine recombinase XerC [Lactobacillus iners ATCC 55195]
 gi|308163729|gb|EFO65998.1| putative tyrosine recombinase XerC [Lactobacillus iners LactinV
           11V1-d]
 gi|315489215|gb|EFU78856.1| tyrosine recombinase XerC [Lactobacillus iners ATCC 55195]
          Length = 307

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 36/279 (12%), Positives = 98/279 (35%), Gaps = 26/279 (9%)

Query: 72  KWLISEYRKS-AHWGSLAVNSRISFESYFDQ----IIRKSGDFDYRKITTKHIR---SGV 123
              +  Y     +  + ++N+  ++     +     +   G  D+ K++++ I      +
Sbjct: 5   DDFLKLYYNYLKNERNYSINTCKAYMDDLSEARTFFVENGGFIDWIKLSSRDIEIFIQYL 64

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
             +K   S+  + ++++R  +++  ++  + +NP   +       +       ++M +  
Sbjct: 65  AQKKDKRSTQSRKISTLRSFYRFLNKRNIIPVNPVELISLRGEHKKLPEFLYNDEMVKVL 124

Query: 184 S----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKT-------G 230
                    G +     E    +G+R S+     ++ +    N+  +  +         G
Sbjct: 125 KSISTTTPLGLRNMALLELFYATGMRVSEIANLKLEQIDFELNLILVHGKGNKDRYVAFG 184

Query: 231 TIITVELPDGFMKLLAMT---PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS-- 285
                 L +  ++               F+N++  ++ +       K     AGV+ S  
Sbjct: 185 EEAKTALNNYLVEARKKLLLHKTDYGYVFLNSNGNRITSRGLEYIIKNIFLNAGVSASVH 244

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            H +R   AT   + GA    +    G +++   + YT 
Sbjct: 245 PHMLRHTFATQMLNNGADLRTVQELLGHESISTTQIYTH 283


>gi|15827711|ref|NP_301974.1| site-specific tyrosine recombinase XerD [Mycobacterium leprae TN]
 gi|221230188|ref|YP_002503604.1| site-specific tyrosine recombinase XerD [Mycobacterium leprae
           Br4923]
 gi|34222781|sp|Q49890|XERD_MYCLE RecName: Full=Tyrosine recombinase xerD
 gi|2065218|emb|CAB08282.1| XerD [Mycobacterium leprae]
 gi|13093262|emb|CAC31746.1| integrase/recombinase [Mycobacterium leprae]
 gi|219933295|emb|CAR71460.1| integrase/recombinase [Mycobacterium leprae Br4923]
          Length = 316

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 48/296 (16%), Positives = 96/296 (32%), Gaps = 42/296 (14%)

Query: 70  TLKWLISEYRKSAHW----GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH----IRS 121
           T   L ++ +    +     S+A N+  S+     +  +   D     +           
Sbjct: 2   TTAALQTQLQGYLDYLIIERSIAANTLSSYRRDLIRYSKHLSDRGIEDLAKVGEHDVSEF 61

Query: 122 GVESRKHTPSS---------AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
            V  R+  P S         A + L ++R L ++AV +  V ++   +V  P       +
Sbjct: 62  LVALRRGDPDSGVAALSAVSAARALIAVRGLHRFAVAEGLVDLDVARAVRPPTPGRRLPK 121

Query: 173 PWTKEDMQQF--------KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFS 223
             T +++           ++      + R   E L  +G R S++    V  +       
Sbjct: 122 SLTVDEVLALLESVGGESRADGPLVLRNRALLELLYSTGSRISEAVGLDVDDVDTQARTV 181

Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKET--------------FFINNDKQKMNATQF 269
           +   K G    V +    ++ L    +   +               F+N    +++    
Sbjct: 182 LLQGKGGKQRLVPVGRPAVQALDAYLVRGRSDLARRGPGMLATPAIFLNARGGRLSRQSA 241

Query: 270 SIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
               +  A  AG+    S H +R   AT   + GA    +    G  +V   + YT
Sbjct: 242 WQVLQDAAEHAGITSGVSPHMLRHSFATHLLEGGADIRVVQELMGHASVTTTQIYT 297


>gi|308389967|gb|ADO32287.1| putative integrase/recombinase [Neisseria meningitidis alpha710]
 gi|325131510|gb|EGC54217.1| tyrosine recombinase XerC [Neisseria meningitidis M6190]
 gi|325139236|gb|EGC61782.1| tyrosine recombinase XerC [Neisseria meningitidis ES14902]
          Length = 305

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 36/278 (12%), Positives = 84/278 (30%), Gaps = 24/278 (8%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD-------YRKITTKHIRSGV 123
                  Y ++      + ++  ++    +++                + ++ +   + +
Sbjct: 6   FAAHFDAYLENIVREGKSEHTVAAYRRDLEELFALLAQMPSEDAGGVPQDLSRRDFTAAL 65

Query: 124 ES---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                R     +  + L+S R    W V +  +  +P   ++ PK+     +   +E + 
Sbjct: 66  RRLSQRGLNARTLARKLSSWRQYCVWLVERGLLHTDPTADIKPPKQPERVPKALPQEWLN 125

Query: 181 QFKSF-----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIIT 234
           +              +    FE +  SGLR S+        +  +   +     G     
Sbjct: 126 RMLDLPVDGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGKGRKQRQ 185

Query: 235 VELP----DGFMKL--LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK--AGVNKSA 286
           V L     +       L  T    +  F   +  +++  Q        A +   G + S 
Sbjct: 186 VPLTGKSVEALKNYLPLRQTASDGKALFTGRNGTRLSQRQIQKRLAQWAAQNGDGRHVSP 245

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           H +R   A     A      +    G  ++   + YTK
Sbjct: 246 HMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTK 283


>gi|212550782|ref|YP_002309099.1| site-specific recombinase XerC [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|212549020|dbj|BAG83688.1| site-specific recombinase XerC [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 299

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 47/262 (17%), Positives = 95/262 (36%), Gaps = 22/262 (8%)

Query: 85  GSLAVNSRISFESYF---DQIIRKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLT 138
            + +V +  ++       ++ +  S  FD R IT+  IR  +     R ++P S  + L+
Sbjct: 21  RNYSVRTLKTYCDDLVQFERFVFCSEGFDMRTITSSVIREWIVFLMDRNYSPRSVNRKLS 80

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS-----QPR 193
           ++R  F++  R   +  NP   +   +            +M       S+G      + R
Sbjct: 81  TLRSFFRYLYRNGQIESNPVKGIVGVRTGRPLPYFVRDREMNTLLLDLSKGEGFEDERDR 140

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAMTPIGK 252
              E    +G+RCS+      + +      I+ T K      +       ++L+     +
Sbjct: 141 TILEVFYSTGIRCSELVGLNDEDIDFESCLIRVTGKGNKQRLIPFSKTLEEILSYYKTIR 200

Query: 253 E--------TFFINNDKQKMNATQFSIWFKAKATKA--GVNKSAHGVRKFSATISADAGA 302
           +         FF+  D + +N        K + +       +S H +R   AT   + GA
Sbjct: 201 DETIWDVSKAFFVREDGRSLNYNIVYRIVKKRLSDIPNLPKRSPHVLRHTFATSMLNNGA 260

Query: 303 TAHELMATYGWKTVDQAETYTK 324
             + +    G  ++   E YT 
Sbjct: 261 NLNAVKELLGHSSLASTEIYTH 282


>gi|309805721|ref|ZP_07699761.1| putative tyrosine recombinase XerC [Lactobacillus iners LactinV
           09V1-c]
 gi|308164974|gb|EFO67217.1| putative tyrosine recombinase XerC [Lactobacillus iners LactinV
           09V1-c]
          Length = 300

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 35/265 (13%), Positives = 95/265 (35%), Gaps = 25/265 (9%)

Query: 85  GSLAVNSRISFESYFDQ----IIRKSGDFDYRKITTKHIR---SGVESRKHTPSSAIQFL 137
            + ++N+  ++     +     +   G  D+ K++++ I      +  +K   S+  + +
Sbjct: 12  RNYSINTCKAYMDDLSEARTFFVENGGFIDWIKLSSRDIEIFIQYLAQKKDKRSTQSRKI 71

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FWSEGSQPR 193
           +++R  +++  ++  + +NP   +       +       ++M +           G +  
Sbjct: 72  STLRSFYRFLNKRNIIPVNPVELISLRGEHKKLPEFLYNDEMVKVLKSISTTTPLGLRNM 131

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKT-------GTIITVELPDGFMKL 244
              E    +G+R S+     ++ +    N+  +  +         G      L +  ++ 
Sbjct: 132 ALLELFYATGMRVSEIANLKLEQIDFELNLILVHGKGNKDRYVAFGEEAKTALNNYLVEA 191

Query: 245 LAMT---PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISAD 299
                         F+N++  ++ +       K     AGV+ S   H +R   AT   +
Sbjct: 192 RKKLLLHKTDYGYVFLNSNGNRITSRGLEYIIKNIFLNAGVSASVHPHMLRHTFATQMLN 251

Query: 300 AGATAHELMATYGWKTVDQAETYTK 324
            GA    +    G +++   + YT 
Sbjct: 252 NGADLRTVQELLGHESISTTQIYTH 276


>gi|85060322|ref|YP_456024.1| site-specific tyrosine recombinase XerC [Sodalis glossinidius str.
           'morsitans']
 gi|84780842|dbj|BAE75619.1| phage integrase [Sodalis glossinidius str. 'morsitans']
          Length = 303

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 41/258 (15%), Positives = 86/258 (33%), Gaps = 19/258 (7%)

Query: 86  SLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTS 139
            L+  +R S++        +I + G  ++R++    +R+     K      +S    L++
Sbjct: 24  QLSAKTRESYQRQLYTVIVLIDEMGLTEWRQLEVSQVRALAARSKRQGLQSASLALRLSA 83

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK---SFWSEGSQPRLAF 196
           +R    W V  + +  NP   V  P+      +    +++       +      + R   
Sbjct: 84  LRSFLDWLVSTDALGANPARGVSAPRHGRHLPKNMDVDEVDHLLDIDTRDPLALRDRAML 143

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI--------ITVELPDGFMKLLAMT 248
           E +  +GLR ++        +      ++    G            V     ++ L    
Sbjct: 144 EVMYGAGLRLAELVGLNCADVDLGGGEVRVVGKGNKERKLPIGATAVTWLTRWLTLRDRY 203

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHE 306
               +  FI N  ++++A      F     K GVN     H +R   AT   ++      
Sbjct: 204 APKDDAVFIANSGRRISARNVQKRFAEWGVKQGVNSHIHPHKLRHSFATHMLESSGNLRA 263

Query: 307 LMATYGWKTVDQAETYTK 324
           +    G   +   + YT 
Sbjct: 264 VQELLGHANLSTTQIYTH 281


>gi|262392887|ref|YP_003284741.1| tyrosine recombinase XerC [Vibrio sp. Ex25]
 gi|262336481|gb|ACY50276.1| tyrosine recombinase XerC [Vibrio sp. Ex25]
          Length = 310

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 36/278 (12%), Positives = 93/278 (33%), Gaps = 21/278 (7%)

Query: 68  PTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV--- 123
           P +L+  +  + +       L+++++ +++   + + +   +   +  +           
Sbjct: 10  PNSLQKPLERFYEFLRSEKGLSLHTQRNYKQQLETMAQHLAEMGLKDWSQVDAGWVRQLA 69

Query: 124 ---ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                     SS    L+S+R  F + + +  ++ NP   V  P++K    +    +++ 
Sbjct: 70  GKGMREGMKASSLATRLSSLRSFFDFLILRGEMSANPAKGVSAPRKKRPLPKNLDVDEVS 129

Query: 181 QFKSF---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE 236
           Q            + R   E +  +GLR ++     V+ +Q     ++   K      V 
Sbjct: 130 QLLEVNEDDPLAVRDRAMMELMYGAGLRLAELVSVDVRDVQLRSGELRVIGKGDKERKVP 189

Query: 237 --------LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286
                   +         +   G+   F++    +++             K  V  + S 
Sbjct: 190 FSGMATEWVAKWLKVRGDLAAPGEPALFVSKLGTRISHRSVQKRMAEWGQKQSVASHISP 249

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           H +R   AT   ++      +    G + +   + YT 
Sbjct: 250 HKLRHSFATHMLESSNNLRAVQELLGHENISTTQIYTH 287


>gi|257458423|ref|ZP_05623565.1| tyrosine recombinase XerC [Treponema vincentii ATCC 35580]
 gi|257444227|gb|EEV19328.1| tyrosine recombinase XerC [Treponema vincentii ATCC 35580]
          Length = 304

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 40/282 (14%), Positives = 91/282 (32%), Gaps = 33/282 (11%)

Query: 76  SEYRK-SAHWGSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVESRKHT--- 129
            +Y   SA     +  +  ++ +            +  + +++   +R  V    +    
Sbjct: 6   EDYLAYSAGVRHFSEKTIEAYRNDLKLFSAWLAENELPFTEVSKVQVRIFVADLGNRHFA 65

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
           P+S  + L+ +R L+++A+++     NP   +   K+  +  R    ++ ++F  F  E 
Sbjct: 66  PASVNRILSCVRGLYRYALQKGLCTTNPAALIRNLKQPDKLPRFLFPDEAERFCEFPKEA 125

Query: 190 -----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMK 243
                ++    F  L  +G R ++     +  L+    ++I   K      V   D   +
Sbjct: 126 GILWYARDAALFSSLYSTGCRAAELQGLKITDLKGECRWAIVRGKGSKERKVFFADFAQE 185

Query: 244 LLAM-------------------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAG--V 282
            +                     TP+ +E  F+N     +                    
Sbjct: 186 AVQRYLTERAELIAYLKEQDGLKTPVAEEALFLNCRGGALTTQGIRYIIDRYTALLPNYK 245

Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             + H  R   A++    GA    +    G   +   + YT 
Sbjct: 246 KLTPHAFRHSFASMFITRGADIRVVQELLGHSNIATTQRYTH 287


>gi|218767552|ref|YP_002342064.1| putative integrase/recombinase [Neisseria meningitidis Z2491]
 gi|34223069|sp|Q9JW14|XERC_NEIMA RecName: Full=Tyrosine recombinase xerC
 gi|121051560|emb|CAM07858.1| putative integrase/recombinase [Neisseria meningitidis Z2491]
 gi|319409816|emb|CBY90124.1| tyrosine recombinase XerC [Neisseria meningitidis WUE 2594]
          Length = 305

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 36/278 (12%), Positives = 85/278 (30%), Gaps = 24/278 (8%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD-------YRKITTKHIRSGV 123
                  Y ++      + ++  ++    +++                + ++ +   + +
Sbjct: 6   FAAHFDAYLENIVREGKSEHTVAAYRRDLEELFALLAQMPSEDAGGVPQGLSQRDFTAAL 65

Query: 124 ES---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                R     +  + L+S R    W V++  +  +P   ++ PK+     +   +E + 
Sbjct: 66  RRLSQRGLNARTLARKLSSWRQYCAWLVKRGLLHTDPTADIKPPKQPERVPKALPQEWLN 125

Query: 181 QFKSF-----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIIT 234
           +              +    FE +  SGLR S+        +  +   +     G     
Sbjct: 126 RMLDLPVDGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGKGRKQRQ 185

Query: 235 VELP----DGFMKL--LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK--AGVNKSA 286
           V L     +       L  T    +  F   +  +++  Q        A +   G + S 
Sbjct: 186 VPLTGKSVEALKNYLPLRQTASDGKALFTGRNGTRLSQRQIQKRLAQWAAQNGDGRHVSP 245

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           H +R   A     A      +    G  ++   + YTK
Sbjct: 246 HMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTK 283


>gi|296125451|ref|YP_003632703.1| integrase family protein [Brachyspira murdochii DSM 12563]
 gi|296017267|gb|ADG70504.1| integrase family protein [Brachyspira murdochii DSM 12563]
          Length = 310

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 37/279 (13%), Positives = 99/279 (35%), Gaps = 23/279 (8%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGVESRKH 128
           L+ E+       + A ++  S+     +        +         + +   + ++S+  
Sbjct: 17  LLDEFSDYLQTLNFAAHTINSYNKDLKEYFNFLESKNILLDNADHYSVRDYLTFLKSKSL 76

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           T S+  + L+S++  +K+ +R         + ++ PKR+    +  + +D+ +  +   +
Sbjct: 77  TNSTMSRHLSSIKKFYKYLIRNGLSDKTRIVDMKSPKREEHIAKFLSLDDIDRILAIDDD 136

Query: 189 GS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII-TVELPD---- 239
           G     + ++   F+   GLR S+     +  ++    +++    G+ +  + +      
Sbjct: 137 GDFTLLRDKMMALFMYAIGLRVSELASLRLSMIKKGDETLRICGKGSKVRDIPVLPVVYE 196

Query: 240 -------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVR 290
                      +        +  FIN   + ++        K     A +  + S H +R
Sbjct: 197 NWDIYMEKRRMIQKEYSQNNDYLFINRFGKPISDRSIRTSMKRLIRNANISMDFSPHTLR 256

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              AT   +  A    +    G +T+   + YT   +  
Sbjct: 257 HTFATHLLNNDAEIRGVQELLGHETIATTQRYTHVTNSR 295


>gi|254168378|ref|ZP_04875223.1| site-specific recombinase, phage integrase family protein
           [Aciduliprofundum boonei T469]
 gi|197622659|gb|EDY35229.1| site-specific recombinase, phage integrase family protein
           [Aciduliprofundum boonei T469]
          Length = 255

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 36/182 (19%), Positives = 72/182 (39%), Gaps = 8/182 (4%)

Query: 159 LSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218
             +   K+K +     +++++++   + +   + RL   FL Y+G+R  +      + ++
Sbjct: 73  EEIPLAKKKEKLPVVLSRDEVKRMI-YGTHNIKHRLVLMFLYYAGMRLQEVRNIRWEDVE 131

Query: 219 --NNIFSIKTQKTGTIITVELPDGFMKLLAMTPI-GKETFFINNDKQKMNATQFSIWFKA 275
               I  IK  K      V L       L +     K   F++   +K +     +  K 
Sbjct: 132 FEREIIHIKVAKGDKERVVFLHPNLKNTLEIYGRKSKGYVFMSQRGKKYSPKSIQLIVKN 191

Query: 276 KATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR--IRL 331
            A +A +NK  + H +R   AT   + GA    +    G K +   + YT  A++   +L
Sbjct: 192 AARRAKINKNVTPHTLRHSFATHLLEGGADIRYIQQLLGHKHLKTTQIYTHVANKDIKKL 251

Query: 332 GI 333
             
Sbjct: 252 AQ 253


>gi|303232676|ref|ZP_07319361.1| phage integrase, N-terminal SAM domain protein [Atopobium vaginae
           PB189-T1-4]
 gi|302481162|gb|EFL44237.1| phage integrase, N-terminal SAM domain protein [Atopobium vaginae
           PB189-T1-4]
          Length = 346

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 52/300 (17%), Positives = 98/300 (32%), Gaps = 52/300 (17%)

Query: 85  GSLAVNSRISFESYFDQ-----IIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
            +L+ N+  ++    D      + R+           +   + + SR +   +  + L++
Sbjct: 36  RNLSHNTLRAYSIDLDAYIAWVLARQYDALSITHRQLREYLASLSSRGYATRTINRHLSA 95

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKSFWSEGSQPRLA 195
           +R  +KW V Q Y   +   ++  PK      R     D+      F     EG + R  
Sbjct: 96  IRSWYKWFVWQGYTTSDAPAALASPKNPKTLPRVLNHHDITTLFNAFDESTPEGVRDRCF 155

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-----ELPDGFMKLL----- 245
            E L  +G R S++ +  +  +  +   I+    G+ + +     E  D   + +     
Sbjct: 156 VEVLYATGCRISEAAQLTLGDIDMHEAQIRLFGKGSKMRIVPVYKECLDELSEYITKARP 215

Query: 246 ------------------AMTPIGK-------ETFFINNDKQKMNATQFSIWFKAKATKA 280
                             A  P             FI+     M+AT     F +   KA
Sbjct: 216 RLLAARTATSRRRAAGKSAAVPTRGTAATGASNRLFISTRGNPMSATALRYVFDSYIEKA 275

Query: 281 GVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338
            +    S H +R   AT     GA    +    G  ++   + YT       + I   +R
Sbjct: 276 NLPATLSPHSMRHTFATDLLSGGADLRSVQELLGHSSLSTTQIYTH------VSIDAMKR 329


>gi|197116868|ref|YP_002137295.1| site-specific recombinase, XerC [Geobacter bemidjiensis Bem]
 gi|197086228|gb|ACH37499.1| site-specific recombinase, XerC [Geobacter bemidjiensis Bem]
          Length = 293

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 40/260 (15%), Positives = 84/260 (32%), Gaps = 21/260 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFD-------YRKITTKHIRSGVESRKHTPSSAIQFL 137
            +++ ++  ++ S  +Q +                 +  +   + +       SS  + L
Sbjct: 16  RNVSPHTLAAYRSDLEQFLSFLAREREAPRAEEVDHLAIRRYLAQLHKGCAK-SSIGRKL 74

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPR 193
           +++R LF++ +R+  +  NP   V  PK++         + +    +  +       + R
Sbjct: 75  SAIRALFRYLMREGKLEKNPAELVSTPKKEKRLPFHLNIDQVSALVTAPAGSSGLPLRDR 134

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLL------A 246
              E L   G+R S+     V  +       +   K G    V +       L       
Sbjct: 135 AVLETLYSCGIRVSELTGMNVGDMDLAAGLARVMGKGGKERLVPVGSCARSALAAYLAER 194

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKA--TKAGVNKSAHGVRKFSATISADAGATA 304
             P   E   +N    ++     +    A      A    S H +R   AT   + GA  
Sbjct: 195 ADPGPAEPLILNARGGRLTRRSVARIVDAHMLLIAAMRKVSPHTLRHTFATHLLEGGADL 254

Query: 305 HELMATYGWKTVDQAETYTK 324
             +    G  ++   + YT 
Sbjct: 255 RAIQELLGHASLSTTQKYTH 274


>gi|296503148|ref|YP_003664848.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis BMB171]
 gi|296324200|gb|ADH07128.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis BMB171]
          Length = 369

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 47/312 (15%), Positives = 108/312 (34%), Gaps = 38/312 (12%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE 124
               TLK  ++ + +     S+  ++   ++++ +  +I   G     K+   HI+   +
Sbjct: 60  PSKVTLKDYLNHWLEIKS-MSIEKSTFAGYKAFINQHVIPSIGMVALHKLNVIHIQKCYK 118

Query: 125 SRKHTPSSAIQFLTSMRVL---FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
           +      +    L   R+L      AV+Q  ++ NP    E PK++   I+ WT+E++++
Sbjct: 119 TAIDKGIANNSILLMHRILKSALNLAVKQNIISRNPTDFAEIPKKEKTPIQTWTEEEVKK 178

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--------------NNIFSIKTQ 227
           F +  S+ S+  + +   + +G+R  +      Q +               +N      +
Sbjct: 179 FLA-HSQESRYHIGYLLAITTGMRLGEVLGLRWQDIDFEKHTVTINQTSGHDNKIKKTAK 237

Query: 228 KTGTIITVELPDGFMKLLAMTPI--------------GKETFFINNDKQKMNATQFSIWF 273
              +  T+ +P   +  L    I               ++    N   + +    F   F
Sbjct: 238 TNSSKRTIPVPIETIAALKRHKILINKEKLRFGSAYLDQDLINCNEFGRIIKRAHFRKSF 297

Query: 274 KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRL 331
                K G+ +   H +R   AT+    G     +    G   +      Y+       +
Sbjct: 298 IRMTHKVGIKEIKFHDLRHTHATLLLKQGVNPKIISERLGHTDISMTLSVYSHVL--PNM 355

Query: 332 GIKNSRRISSVV 343
             +  +     +
Sbjct: 356 QEEAVKNFGKSI 367


>gi|328472418|gb|EGF43284.1| site-specific tyrosine recombinase XerC [Vibrio parahaemolyticus
           10329]
          Length = 310

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 36/278 (12%), Positives = 94/278 (33%), Gaps = 21/278 (7%)

Query: 68  PTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV--- 123
           P++L+  +  + +       L+++++ +++   + + +   +   +  +           
Sbjct: 10  PSSLQKPLERFYEFLRSEKGLSLHTQRNYKQQLETMAQHLAEMGLKDWSQVDAGWVRQLA 69

Query: 124 ---ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                     SS    L+S+R  F + + +  ++ NP   V  P++K    +    +++ 
Sbjct: 70  GKGMREGMKASSLATRLSSLRSFFDFLILRGEMSANPAKGVSAPRKKRPLPKNLDVDEVN 129

Query: 181 QFKSF---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE 236
           Q            + R   E +  +GLR ++     V+ +Q     ++   K      V 
Sbjct: 130 QLLEVNEDDPLAIRDRAMMELMYGAGLRLAELVSVDVRDVQLRSGELRVIGKGDKERKVP 189

Query: 237 --------LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286
                   +         +   G+   F++    +++             K  V  + S 
Sbjct: 190 FSGMATEWVGKWLRVRGDLAAPGEPALFVSKLGTRISHRSVQKRMAEWGQKQSVASHISP 249

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           H +R   AT   ++      +    G + +   + YT 
Sbjct: 250 HKLRHSFATHMLESSNNLRAVQELLGHENISTTQIYTH 287


>gi|219854481|ref|YP_002471603.1| hypothetical protein CKR_1138 [Clostridium kluyveri NBRC 12016]
 gi|219568205|dbj|BAH06189.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 295

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 41/277 (14%), Positives = 101/277 (36%), Gaps = 22/277 (7%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQ----IIRKSGD-FDYRKITTKHIRSGVESRKHTPSS 132
           Y +      ++ N+  ++    ++    I ++ G+  +   ++       ++      SS
Sbjct: 11  YAEQLEKKHMSKNTLDAYIRDINRFYNFIKKREGNLKEVEVVSIMAYVQYLQKEGKAISS 70

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----E 188
            ++ + S+R  +K+ + +  +  NP L  E PK K    +  T +++ +          +
Sbjct: 71  IVRNIVSLRNFYKYLMVKGVINENPLLYYEIPKVKHNIPKVLTVDEVDKLLDSPDSTTYK 130

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ--KTGTIITVELP----DGFM 242
           G + +   E +  +G++  +     +  +      I+ +  K    + V +         
Sbjct: 131 GIRDKAMLEIMYAAGMKVMELLTLTIYDIDLKFSYIRCKSLKNKERL-VPIGSVAVQYLK 189

Query: 243 KLLAMTPIGK----ETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATI 296
             L + P       +T F+N     M+   F    K  A ++ ++K   A  +R   A  
Sbjct: 190 NYLDIRPQLNIYNLDTLFLNLRGAAMSRQGFWKIVKYYAKESKIDKDINAFTLRHSFAVH 249

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
               GA    +    G K +   + Y+    + ++  
Sbjct: 250 LLQNGADIKSVQELLGHKDLSATQIYSAVLKKNKIAE 286


>gi|153953866|ref|YP_001394631.1| hypothetical protein CKL_1241 [Clostridium kluyveri DSM 555]
 gi|146346747|gb|EDK33283.1| XerD [Clostridium kluyveri DSM 555]
          Length = 292

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 41/277 (14%), Positives = 101/277 (36%), Gaps = 22/277 (7%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQ----IIRKSGD-FDYRKITTKHIRSGVESRKHTPSS 132
           Y +      ++ N+  ++    ++    I ++ G+  +   ++       ++      SS
Sbjct: 8   YAEQLEKKHMSKNTLDAYIRDINRFYNFIKKREGNLKEVEVVSIMAYVQYLQKEGKAISS 67

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----E 188
            ++ + S+R  +K+ + +  +  NP L  E PK K    +  T +++ +          +
Sbjct: 68  IVRNIVSLRNFYKYLMVKGVINENPLLYYEIPKVKHNIPKVLTVDEVDKLLDSPDSTTYK 127

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ--KTGTIITVELP----DGFM 242
           G + +   E +  +G++  +     +  +      I+ +  K    + V +         
Sbjct: 128 GIRDKAMLEIMYAAGMKVMELLTLTIYDIDLKFSYIRCKSLKNKERL-VPIGSVAVQYLK 186

Query: 243 KLLAMTPIGK----ETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATI 296
             L + P       +T F+N     M+   F    K  A ++ ++K   A  +R   A  
Sbjct: 187 NYLDIRPQLNIYNLDTLFLNLRGAAMSRQGFWKIVKYYAKESKIDKDINAFTLRHSFAVH 246

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
               GA    +    G K +   + Y+    + ++  
Sbjct: 247 LLQNGADIKSVQELLGHKDLSATQIYSAVLKKNKIAE 283


>gi|317508798|ref|ZP_07966443.1| tyrosine recombinase XerD [Segniliparus rugosus ATCC BAA-974]
 gi|316252907|gb|EFV12332.1| tyrosine recombinase XerD [Segniliparus rugosus ATCC BAA-974]
          Length = 340

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 52/280 (18%), Positives = 92/280 (32%), Gaps = 47/280 (16%)

Query: 90  NSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV------ESRKHTPSSAIQFLTSMRVL 143
           + R   + Y D +  +S   D  ++T+  I   +      E      SSA + L+++R L
Sbjct: 44  SYRRDLDRYMDFLRERSA-TDLAQVTSAQIAEFLAWSRDPEGMGLAQSSAARGLSAVRGL 102

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF---------KSFWSEGSQPRL 194
            K+AV +   A +    V+ P+      +    + +            +S      +   
Sbjct: 103 HKFAVLEGMAAQDAAHGVKPPQPGRRLPKALPVDQVIAIIEASGMADSESDIPRALRDAA 162

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM------ 247
             E +  +G R S++    +  +     S +   K      V L    +  L        
Sbjct: 163 LLELMYCTGCRVSEAVGLNLLDVDFQARSARVLGKGDKERLVPLGGPAVAALDAYLVRGR 222

Query: 248 --------------------TPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGVNK- 284
                                P GK T   F+N   ++ +        +  A KAGV   
Sbjct: 223 PALLAARIPRGSASRSYSREAPPGKATNALFLNARGERFSRQSTWASLRHAAAKAGVKAE 282

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
            S H +R   AT   + GA    +    G  +V   + YT
Sbjct: 283 ISPHTLRHSCATHLLEGGADVRVVQELLGHASVVTTQIYT 322


>gi|307246735|ref|ZP_07528805.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           1 str. 4074]
 gi|307255720|ref|ZP_07537524.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           9 str. CVJ13261]
 gi|307260172|ref|ZP_07541882.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           11 str. 56153]
 gi|306852435|gb|EFM84670.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           1 str. 4074]
 gi|306861397|gb|EFM93387.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           9 str. CVJ13261]
 gi|306865818|gb|EFM97696.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           11 str. 56153]
          Length = 336

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 36/259 (13%), Positives = 89/259 (34%), Gaps = 19/259 (7%)

Query: 85  GSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLT 138
              + ++  +++     +     ++G   ++++ +  +R  +     +     S    L 
Sbjct: 53  KQASQHTLSNYQRQLLAVSDMLSQAGISTWQEVNSATVRWIIAQSNKQGLGAKSIALRLV 112

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS---FWSEGSQPRLA 195
           ++R  F + +RQE +++NP + ++ PK      +    E  +Q  +         +    
Sbjct: 113 ALRQWFSYLIRQEKMSVNPAVGIKAPKASKRLPKNIDAEQAEQLLTSDSHEPSDLRDLAM 172

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMT------ 248
            E +  SGLR S+     +  +      ++   K      V +    ++ L         
Sbjct: 173 MELMYSSGLRLSELQGLDLGDMDLAGREVRLLGKGNKERIVPIGSKALEALNRWLAVRNQ 232

Query: 249 -PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAH 305
                   F+N    +++     +  +    K G+  +   H +R   AT   +A     
Sbjct: 233 FKPQDNAVFLNKRGGRLSHRSIQLVMQKWGEKQGLESHLHPHKLRHSFATHMLEASGDLR 292

Query: 306 ELMATYGWKTVDQAETYTK 324
            +    G   +   + YT 
Sbjct: 293 AVQELLGHSNLATTQIYTH 311


>gi|260752898|ref|YP_003225791.1| integrase family protein [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
 gi|258552261|gb|ACV75207.1| integrase family protein [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
          Length = 307

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 45/281 (16%), Positives = 97/281 (34%), Gaps = 17/281 (6%)

Query: 74  LISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132
           LI  + +  A     + N+ +++ S      ++  +   +  T      GV    +  ++
Sbjct: 16  LILRFLEMMAAESGSSPNTLMAYGSDLRLASQQLENGLVKADTDDLASLGVVWSDYARNT 75

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF---------K 183
             +   +++  +++ + +     +P  S+          +  T  ++++          +
Sbjct: 76  VARKSAALKHFYRFLLEEGMRTDDPSSSLPHAGISRNLPKILTTAEVERLFVTLQQRYDR 135

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPDGFM 242
           +      +     E L  SGLR S+      Q       F I   K G    V + D   
Sbjct: 136 AATPSTLRLMALVELLYGSGLRASELVSLPKQAFIRKQPFLILKGKGGRERLVPISDRAT 195

Query: 243 KLLAMTPI---GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATI 296
             +A   +    K  +   + K  ++  +     K  A +A + +   S H +R   AT 
Sbjct: 196 DAVAAWLVHVPEKSLWLFPSGKGHISRIRLYQLIKELAVEADLPRERVSPHVLRHAFATH 255

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
             + GA    L    G   +   + YT    +  + + NSR
Sbjct: 256 LLEGGADLRVLQLLLGHADISTTQIYTHVDSQKLVELVNSR 296


>gi|237718824|ref|ZP_04549305.1| site-specific recombinase [Bacteroides sp. 2_2_4]
 gi|229451956|gb|EEO57747.1| site-specific recombinase [Bacteroides sp. 2_2_4]
          Length = 393

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 55/294 (18%), Positives = 118/294 (40%), Gaps = 27/294 (9%)

Query: 62  NSPRKKPTTLKWLISEYRK-SAHWGSLAVNSRISFESYFDQIIRKSGDFDY--RKITTKH 118
           +  +K   TL   + ++ K +A     ++ ++ +  +  DQ +   G  ++  + +  + 
Sbjct: 86  DKVKKSRMTLTKWMDDFVKYNAELSESSMKTKRNTHARIDQYLLYIGKPEFLLKDVDKEF 145

Query: 119 IRSGVESRKH-TPSSAIQFLTSM--RVLFKW-------AVRQEYVAINPCLSVE---RPK 165
            +  +   K  T +   + L++   R+   +       A+R   +  NP L +E   +P+
Sbjct: 146 CKGFITFLKTCTYNDGKKQLSTTTCRMFVNYFGSSLAKAIRDGLIEQNPFLLLEAKEKPQ 205

Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL------QN 219
           ++       T E++++  +        + AF F  ++GLR SD        +      + 
Sbjct: 206 KRVAEREFLTIEEIKKVMNTPCRYELVKKAFLFSCFTGLRYSDMKTLNWSEIHKAADGKT 265

Query: 220 NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK 279
                   KT   +T+ L +   K +     G +  F N     + +T   +  K     
Sbjct: 266 EYIDHIQVKTKDRVTIPLSEETKKWMPKREEGIDNIFHNLT---ITSTTVEVVLKEWMEV 322

Query: 280 AGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           AG++K  + H  R  +AT+    GA+ + +    G K++   E Y K  D+ +L
Sbjct: 323 AGISKHITYHCSRHTAATMFLTLGASIYVVSKILGHKSIKMTEIYAKIVDKKKL 376


>gi|90414248|ref|ZP_01222228.1| tyrosine recombinase [Photobacterium profundum 3TCK]
 gi|90324695|gb|EAS41236.1| tyrosine recombinase [Photobacterium profundum 3TCK]
          Length = 304

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 39/272 (14%), Positives = 91/272 (33%), Gaps = 22/272 (8%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV------ESR 126
            L  EY +S     L+++++ +++     I  +   F+    T                 
Sbjct: 13  QLFYEYIRSER--ELSLHTQQNYKRQLSTIAEQLVSFEVTDWTMVDAGWVRQIASKGMRD 70

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185
               SS    L+++R  F + V+++ +  NP   V  P++     +    ++M Q  S  
Sbjct: 71  GLKASSISMRLSALRSFFDFLVQKDILKANPAKGVAAPRKARPLPKNLDVDEMDQLLSVN 130

Query: 186 --WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-------- 235
                  + R   E +  +GLR ++     V+ +  +   I+    G    +        
Sbjct: 131 EDDPLSIRDRAMMELMYGAGLRLAELVSLNVRDISLSKGDIRVIGKGDKERIVPFAGLAR 190

Query: 236 -ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKF 292
             + +      ++    +   F++    +++             K  V  + + H +R  
Sbjct: 191 EWVANWLKVRGSLASGDESGLFVSKLGTRISTRNVQKRMAEWGQKQAVSSHINPHKLRHS 250

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324
            AT   ++      +    G   +   + YT 
Sbjct: 251 FATHMLESSGDLRAVQELLGHANLSTTQIYTH 282


>gi|94266129|ref|ZP_01289843.1| Phage integrase [delta proteobacterium MLMS-1]
 gi|93453304|gb|EAT03747.1| Phage integrase [delta proteobacterium MLMS-1]
          Length = 465

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 63/349 (18%), Positives = 130/349 (37%), Gaps = 28/349 (8%)

Query: 10  FVTKERTRHGKIIY-YFRKGHG--RRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
           F+ + R+  GK  +  +R GHG  R+ ++    + +F  A  +A T    +      P  
Sbjct: 119 FILEVRSTGGKTYHLRYRDGHGKLRQHKIGGADDISFDKA-QAAATRLRSRVVLGEDPLA 177

Query: 67  KPTTLKWL--ISEYRKSAHWGSLAVNSRISFESYF----DQIIRKSGDFDYRKITTKHIR 120
           +  T K +  + E+     +       + S++S F    + ++   G+    +I    + 
Sbjct: 178 ERQTKKQVPTLEEFAAE-KYMPYVKGYKRSWKSDFGYLKNHLLPLFGNQHLDQIKQAEVI 236

Query: 121 SGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEY--VAINPCLSVERPKRKTEGIRPWT 175
                 K      ++  + +  +R +F  A + +      NP   V   +      R  T
Sbjct: 237 ELHHGMKARGYALATCNRQVILLRYIFNLARKWKIPGADNNPTTGVALFEANNGRERYLT 296

Query: 176 KEDMQQFKSFW--SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGT 231
           +++  + K+    SE +Q +     LL  G R S+   +  +       S +    K+G 
Sbjct: 297 EDEAARLKAALESSENTQLKYIVSLLLLLGCRKSELLNSRWEDFDLARRSWRIPLSKSGK 356

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK---ATKAGV-NKSAH 287
              V L    +++LA  P        N          F   F++      KAG+ +   H
Sbjct: 357 ARYVPLSTAALEVLASIPRLSPYVVPN----PKTLQPFVSVFRSWDTARKKAGLPDVRMH 412

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
            +R   A+   ++G + +E+    G   +   + Y+  ++   L   +S
Sbjct: 413 DLRHSFASFLVNSGRSIYEVSQLLGHSQLKTTQRYSHLSNDTLLAAVDS 461


>gi|309809264|ref|ZP_07703133.1| putative tyrosine recombinase XerC [Lactobacillus iners SPIN
           2503V10-D]
 gi|308170377|gb|EFO72401.1| putative tyrosine recombinase XerC [Lactobacillus iners SPIN
           2503V10-D]
          Length = 307

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 36/279 (12%), Positives = 95/279 (34%), Gaps = 26/279 (9%)

Query: 72  KWLISEYRKS-AHWGSLAVNSRISFESYFDQ----IIRKSGDFDYRKITTKHIR---SGV 123
              +  Y     +  + ++N+  ++     +     +   G  D+ K++++ I      +
Sbjct: 5   DDFLKLYYNYLKNERNYSINTCKAYMDDLSEARTFFVENGGFIDWIKLSSRDIEIFIQYL 64

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
             +K   S+  + ++++R  +++  ++  + +NP   +       +       ++M +  
Sbjct: 65  AQKKDKRSTQSRKISTLRSFYRFLNKRNIIPVNPVELISLRGEHKKLPEFLYNDEMVKVL 124

Query: 184 S----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELP 238
                    G +     E    +G+R S+     ++ +   +   +   K      V   
Sbjct: 125 KSISTTTPLGLRNMALLELFYATGMRVSEIANLKLEQIDFELNLILVHGKGNKDRYVAFG 184

Query: 239 DGFMKLLAMT-----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS-- 285
           +     L                     F+N++  ++ +       K     AGV+ S  
Sbjct: 185 EEAKTALNNYLVEARKKILLHKTDYGYVFLNSNGNRITSRGLEYIIKNIFLNAGVSASVH 244

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            H +R   AT   + GA    +    G +++   + YT 
Sbjct: 245 PHMLRHTFATQMLNNGADLRTVQELLGHESISTTQIYTH 283


>gi|295111500|emb|CBL28250.1| Site-specific recombinase XerD [Synergistetes bacterium SGP1]
          Length = 308

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 41/280 (14%), Positives = 95/280 (33%), Gaps = 29/280 (10%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVES--- 125
             LI  +  S    S + ++ +++ S   Q        G  + R +    +R+ + +   
Sbjct: 3   DHLIDAFMASVQNRSQSEHTLVNYASDLRQFAEYLEGCGASEVRSVEAPILRAYLRALFG 62

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
             +  ++  + L+S+R  F +   +  +  +P  ++  P       R  ++E +++  + 
Sbjct: 63  WGYAKATVARKLSSLRSFFAFLKERGVLERDPARNLRGPGAPRRIPRALSEEVVERLFAA 122

Query: 186 W---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVE---LP 238
                E  +     E L   GLR S+      + +  +  + I   K      V      
Sbjct: 123 AGESEEALRDTAILEVLYGCGLRVSELTGLRWEDVDLDERWLIILGKGSKERRVPFGRCA 182

Query: 239 DGFMKLLAMTPIGKETFFINNDK---------------QKMNATQFSIWFKAKATKAGVN 283
              +  L          F+ ++                + +          A A +AG+ 
Sbjct: 183 QRALTALRGEQALGPFVFVGHEGAGSPGREGRRGRTGQKPVTVRTVHRVVTALAARAGLE 242

Query: 284 K-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
             + H +R   AT   + GA+   +    G +++   + Y
Sbjct: 243 GVTPHVLRHSCATHLLEHGASLKFVQEFLGHESLATTQIY 282


>gi|291612618|ref|YP_003522775.1| tyrosine recombinase XerC [Sideroxydans lithotrophicus ES-1]
 gi|291582730|gb|ADE10388.1| tyrosine recombinase XerC [Sideroxydans lithotrophicus ES-1]
          Length = 299

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 37/281 (13%), Positives = 92/281 (32%), Gaps = 20/281 (7%)

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
           + +  + P TL+  +  Y  +    + +  +  ++     ++   +G      + + HIR
Sbjct: 1   MPAAEQVPATLQGYL-AYLNNER--NYSPLTAENYARDIRRLFELAGATPLPDLKSHHIR 57

Query: 121 SGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
             +           S  + L++ R  + + +R      NPC+ +  PK         + +
Sbjct: 58  RYIAQLHGSGLGGRSLARVLSAWRGFYGYLMRDHGCKSNPCVGLRAPKAPKTLPHALSPD 117

Query: 178 DMQQFKSFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234
           +  +           ++ +  FE L  SGLR ++        +     S++    G    
Sbjct: 118 EAVKLVEMLVATPLDARDKAMFELLYSSGLRLAELVSLDPIDMDFADASVRVTGKGNKTR 177

Query: 235 V---------ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--N 283
           +          L         +   G+   F+  +  +++     +  + +    G+   
Sbjct: 178 IVPLGSHAIDALKAWLAVRDQIAKPGETALFVGKNGARISPRTVQLQLRQRGITQGIASG 237

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              H +R   AT    +      +    G  ++   + YT 
Sbjct: 238 VHPHLLRHSFATHVLQSSGDLRAVQEMLGHASISTTQVYTH 278


>gi|163792809|ref|ZP_02186786.1| integrase/recombinase XerD [alpha proteobacterium BAL199]
 gi|159182514|gb|EDP67023.1| integrase/recombinase XerD [alpha proteobacterium BAL199]
          Length = 314

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 53/309 (17%), Positives = 106/309 (34%), Gaps = 26/309 (8%)

Query: 63  SPRKKPTTLKWLISEYRKS-AHWGSLAVNSRISFESYFDQ----IIRKSGDFDYRKIT-T 116
           + +  P      I  + +  A     A N+  ++          +  + G  +   +   
Sbjct: 2   ARQAAPRGWTSAIETFLEMMAAERGAARNTLDAYGRDLMHAELWLNERGGSLETADVDGL 61

Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
           +   S  E+    P +A + L++ R  F++   +   A +P  +++ P+R     +  ++
Sbjct: 62  RAYLSAAEAGGVMPRTAARRLSAQRQFFRFLYAEGRRADDPTATLDAPRRGRPLPKILSE 121

Query: 177 EDMQQFKSFW-----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-QNNIFSIKTQKTG 230
            D+             EG +     E L  +GLR S+        + ++    I   K G
Sbjct: 122 ADVDALLDAACDRPGPEGLRLICLLEVLYATGLRVSELVGLPFAAVARDPHVLIVRGKGG 181

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINND----------KQKMNATQFSIWFKAKATKA 280
               V L    M  +A     +  F               +  +   +F       A  A
Sbjct: 182 KERMVPLTAAAMDAIAAYKAVRGVFLTTKASPHLFPSRSAQGHLTRRRFGQLLDETAILA 241

Query: 281 GVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIRLGIKNS 336
           G++    S H +R   AT   D GA    +    G   +   + YT   A+R+R  ++  
Sbjct: 242 GIDPAKVSPHVLRHAFATHLLDHGADLRSVQQMLGHADISTTQIYTHVLAERLRALVETH 301

Query: 337 RRISSVVDS 345
             ++  + S
Sbjct: 302 HPLARSLSS 310


>gi|467161|gb|AAA50925.1| u0247d [Mycobacterium leprae]
          Length = 316

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 48/296 (16%), Positives = 95/296 (32%), Gaps = 42/296 (14%)

Query: 70  TLKWLISEYRKSAHW----GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH----IRS 121
           T   L ++ +    +     S+A N+  S+     +  +   D     +           
Sbjct: 2   TTAALQTQLQGYLDYLIIERSIAANTLSSYRRDLIRYSKHLSDRGIEDLAKVGEHDVSEF 61

Query: 122 GVESRKHTPSS---------AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
            V  R+  P S         A + L ++R L ++AV +  V ++   +V  P       +
Sbjct: 62  LVALRRGDPDSGVAALSAVSAARALIAVRGLHRFAVAEGLVDLDVARAVRPPTPGRRLPK 121

Query: 173 PWTKEDMQQFK--------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFS 223
             T +++            +      + R   E L  +G R S++    V  +       
Sbjct: 122 SLTVDEVLALLESVGGESGADGPLVLRNRALLELLYSTGSRISEAVGLDVDDVDTQARTV 181

Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKET--------------FFINNDKQKMNATQF 269
           +   K G    V +    ++ L    +   +               F+N    +++    
Sbjct: 182 LLQGKGGKQRLVPVGRPAVQALDAYLVRGRSDLARRGPGMLATPAIFLNARGGRLSRQSA 241

Query: 270 SIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
               +  A  AG+    S H +R   AT   + GA    +    G  +V   + YT
Sbjct: 242 WQVLQDAAEHAGITSGVSPHMLRHSFATHLLEGGADIRVVQELMGHASVTTTQIYT 297


>gi|121634218|ref|YP_974463.1| putative integrase/recombinase [Neisseria meningitidis FAM18]
 gi|166918892|sp|A1KS31|XERC_NEIMF RecName: Full=Tyrosine recombinase xerC
 gi|120865924|emb|CAM09661.1| putative integrase/recombinase [Neisseria meningitidis FAM18]
          Length = 305

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 36/278 (12%), Positives = 84/278 (30%), Gaps = 24/278 (8%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD-------YRKITTKHIRSGV 123
                  Y ++      + ++  ++    +++                + ++ +   + +
Sbjct: 6   FAAHFDAYLENIVREGKSEHTVAAYRRDLEELFALLAQMPSEDVGGVPQDLSRRDFTAAL 65

Query: 124 ES---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                R     +  + L+S R    W V +  +  +P   ++ PK+     +   +E + 
Sbjct: 66  RRLSQRGLNARTLARKLSSWRQYCVWLVERGLLHTDPTADIKPPKQPERVPKALPQEWLN 125

Query: 181 QFKSF-----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIIT 234
           +              +    FE +  SGLR S+        +  +   +     G     
Sbjct: 126 RMLDLPVDGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGKGRKQRQ 185

Query: 235 VELP----DGFMKL--LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK--AGVNKSA 286
           V L     +       L  T    +  F   +  +++  Q        A +   G + S 
Sbjct: 186 VPLTGKSVEALKNYLPLRQTASDGKALFTGRNGTRLSQRQIQKRLAQWAAQNGDGRHVSP 245

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           H +R   A     A      +    G  ++   + YTK
Sbjct: 246 HMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTK 283


>gi|119719024|ref|YP_919519.1| phage integrase family protein [Thermofilum pendens Hrk 5]
 gi|119524144|gb|ABL77516.1| phage integrase family protein [Thermofilum pendens Hrk 5]
          Length = 295

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 58/276 (21%), Positives = 105/276 (38%), Gaps = 9/276 (3%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           LI  Y       + +  +  SF+S  ++ +R  GD    ++T   +   +   +      
Sbjct: 16  LIDLYISHLVARNRSEKTIKSFKSILEEFVRFLGDRHVSQVTVYDVDFFLAHLRRKGWKK 75

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
               T+   + ++         N     E PKR+    R    E++ +  +  +E  + +
Sbjct: 76  DSIYTAAVAVKRFLEFLGL-GGNIA-GFELPKREKRLPRYLEAEEVFRMVN-AAENLRDK 132

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDGFMKLLA--MTPI 250
           L    L  +GLR S+     V  +     +++ +  G+    V  PD    LL   M  +
Sbjct: 133 LIVLLLFTTGLRVSELVSLRVSDVDLEKRTLRVRGKGSKERLVYFPDYVADLLRSYMKGL 192

Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELM 308
             E  F +   + ++ T      K    KAG+ K  + H +R   AT+S  AG    E+ 
Sbjct: 193 NSEWLFPSETAEHIHYTTVERVLKRLKEKAGIEKKVTPHTLRHSFATLSLAAGLDIREIQ 252

Query: 309 ATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
              G   ++  + Y     R RL     R  SS++D
Sbjct: 253 ELLGHSNLNTTQVYAH-VSRERLKRDYERVWSSLLD 287


>gi|116629573|ref|YP_814745.1| integrase [Lactobacillus gasseri ATCC 33323]
 gi|282852048|ref|ZP_06261406.1| tyrosine recombinase XerC [Lactobacillus gasseri 224-1]
 gi|116095155|gb|ABJ60307.1| tyrosine recombinase XerC subunit [Lactobacillus gasseri ATCC
           33323]
 gi|282556808|gb|EFB62412.1| tyrosine recombinase XerC [Lactobacillus gasseri 224-1]
          Length = 307

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 43/279 (15%), Positives = 105/279 (37%), Gaps = 26/279 (9%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQ----IIRKSGDFDYRKITTKHIRSGVESR 126
             LI +++   ++  + + N+  S+ +  D+         G   + K+ ++ +   ++S 
Sbjct: 6   DKLIKQFQDYLNYERNYSKNTVSSYLNDLDEAKQFFKENGGFGGWDKVKSRDVEIFLQSL 65

Query: 127 KH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
                + ++  + ++S+R  +++ V++E +  +P  ++     + +  + + +++M+Q  
Sbjct: 66  AAQNRSRTTQARKMSSLRSFYRFLVKREVLENDPMQTISLRLGEKKLPQFFYEKEMRQVF 125

Query: 184 SFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVEL- 237
              +       + R  FE    +G+R S+     +  +  +    +   K      V   
Sbjct: 126 DSLAGHDKLVVRNRAMFELFYATGMRLSEMASLKLDQIDFDLKIILVHGKGNKDRYVPFG 185

Query: 238 ---PDGFMK-------LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS-- 285
               D   +        L          F+NN  QK+         +    KAGV     
Sbjct: 186 KDALDALREYRDDVRLALLGQNEDLGYVFLNNRGQKLTGRGIEYIMQQVFIKAGVGGKVH 245

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            H +R   AT   + GA    +    G +++   + YT 
Sbjct: 246 PHMLRHSFATEMLNNGADLRSVQELLGHESLSTTQIYTH 284


>gi|218778262|ref|YP_002429580.1| tyrosine recombinase XerC [Desulfatibacillum alkenivorans AK-01]
 gi|218759646|gb|ACL02112.1| tyrosine recombinase XerC [Desulfatibacillum alkenivorans AK-01]
          Length = 315

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 46/284 (16%), Positives = 94/284 (33%), Gaps = 35/284 (12%)

Query: 74  LISEYRKS-AHWGSLAVNSRISFESYFDQII--------------RKSGDFDYRKITTKH 118
            I  + +S A     +  + +++     +                  +       +  + 
Sbjct: 14  WIDSFLESLAAERRYSPATCLAYGKDLREFFSYVAESGLQGEISPENADVERVDNLAIRG 73

Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
               +  +    + A + L+S+R  +++  ++  VA+NP  SV  PKRK       T ++
Sbjct: 74  YLGFLHKKNEKSTMARK-LSSLRSFYRFLEKRGRVAVNPAQSVVTPKRKKTVAAHLTVDE 132

Query: 179 ----MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDS--CRAGVQHLQNNIFSIKTQKTGTI 232
               +         G++ R  FE L  +G+R S+      G  +       +   K    
Sbjct: 133 AFALLDSILDDSLAGARDRAMFECLYSTGIRVSELAGLNMGRVNFSGKTLRV-LGKGDKE 191

Query: 233 ITVELPDGFMKLLAMTP----------IGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
             V +    ++ +                 E  F+N +  ++         +      G+
Sbjct: 192 RIVPVGAKALEHIKAYRDRLAVEGPKNPDPEAVFLNKNGGRLTTRSIRRILEKIVRDMGL 251

Query: 283 NK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           N+  S HG+R   AT   D GA    +    G  ++     YT 
Sbjct: 252 NRPLSPHGLRHTFATHMLDNGADLRSVQELLGHASISTTGRYTH 295


>gi|163747117|ref|ZP_02154473.1| tyrosine recombinase XerD [Oceanibulbus indolifex HEL-45]
 gi|161379678|gb|EDQ04091.1| tyrosine recombinase XerD [Oceanibulbus indolifex HEL-45]
          Length = 327

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 47/305 (15%), Positives = 96/305 (31%), Gaps = 33/305 (10%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIR 120
               T  W+ S    +A     A N+++++             +        +   +   
Sbjct: 4   SHTQTFHWISSFLEAAAAEQGAATNTQLAYGRDLKDFDAFLARQNHDFLTASRGEVEDYL 63

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
              +++    S+  + L++++ L+++A  +     NP + +  P +     +  ++E++ 
Sbjct: 64  VYCDAQGLAKSTRARRLSAIKQLYRFAFEEGLREDNPAVQIAGPGQDRRLPKILSEEEVD 123

Query: 181 QFKSFWSEGSQPRLA-------FEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTI 232
           +         +            E L  +G+R S+     V   + +    + + K G  
Sbjct: 124 RLLDAARNSGRALADQLRNTCLMELLYATGMRVSELVSLPVSAARGDPRLLLISGKGGRE 183

Query: 233 ITVELPDGFMKLLAM----------------TPIGKETFFINNDKQKMNATQFSIWFKAK 276
             V L +     LA                  P  +  F        +   +F +  K  
Sbjct: 184 RLVPLSEPARDALAAWLVVRDKADEAAQAKGKPPARHLFPSRGVMGHLTRHRFYLLIKEF 243

Query: 277 ATKAGV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           A   GV     + H +R   AT     GA    +    G   V   E YT   +  RL  
Sbjct: 244 AVTGGVPPEKVTPHTLRHAFATHLLANGADLRAIQTMLGHADVATTEIYTHVLEE-RLSD 302

Query: 334 KNSRR 338
               R
Sbjct: 303 LVLER 307


>gi|54288326|gb|AAV31614.1| predicted site-specific recombinase [uncultured alpha
           proteobacterium EBAC2C11]
          Length = 315

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 51/302 (16%), Positives = 97/302 (32%), Gaps = 38/302 (12%)

Query: 74  LISEYRKS-AHWGSLAVNSRISFESYF-------DQIIRKSGDFDYRKITTKHIRSGVES 125
           LI  + ++ +   + +VN+  ++           +   +   + D   +  + +      
Sbjct: 17  LIDGFLQAISAMKAASVNTLSAYRRDLLDCQIGLETRAKTLTNCDMDDL--RGVIFWWHQ 74

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           R   P S  + L+++R    WAV       NP   ++ P       +  ++ ++ Q    
Sbjct: 75  RDLKPRSVARRLSALRQFMGWAVEDGVRQDNPTTWLDNPSLPMSAPKSLSEVEIIQLLKM 134

Query: 186 WS------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238
                      +     E L  +GLR S+     V   + N  +I    K G    V L 
Sbjct: 135 AKTLEPESASLRALAMLEILYATGLRVSELVSLLVVQFRRNPQTILVKGKGGRERLVPLG 194

Query: 239 DGFM---------KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SA 286
           +            +      +  +  F       M+  Q +   K  A  A +     S 
Sbjct: 195 ETARLAAVRWIECRDSNPAFVQSDYMFPVRGGGPMSRHQLARLLKKLAVAADIEVGRVSP 254

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346
           H +R   AT   + GA    L +  G   +   + YT              R++ +V S 
Sbjct: 255 HKLRHSFATHMLNRGADLRSLQSLLGHADISTTQIYTSSR---------PERLAGLVTSA 305

Query: 347 DP 348
            P
Sbjct: 306 HP 307


>gi|241761139|ref|ZP_04759228.1| integrase family protein [Zymomonas mobilis subsp. mobilis ATCC
           10988]
 gi|241374758|gb|EER64219.1| integrase family protein [Zymomonas mobilis subsp. mobilis ATCC
           10988]
          Length = 307

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 48/281 (17%), Positives = 98/281 (34%), Gaps = 17/281 (6%)

Query: 74  LISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132
           LI  + +  A     + N+ +++ S      ++  +   +  T      GV    +  ++
Sbjct: 16  LILRFLEMMAAESGSSPNTLMAYGSDLRLASQQLENGLVKADTDDLASLGVVWSDYARNT 75

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF-------KSF 185
             +   +++  +++ + +     +P  S+          +  T  ++++           
Sbjct: 76  VARKSAALKHFYRFLLEEGMRTDDPSSSLPHAGISRNLPKILTTAEVERLFVTLQQRYER 135

Query: 186 WSEGSQPRLA--FEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPDGFM 242
            +  S  RL    E L  SGLR S+      Q       F I   K G    V + D   
Sbjct: 136 AATPSTLRLMALVELLYGSGLRASELVSLPKQAFIRKQPFLILKGKGGRERLVPISDRAT 195

Query: 243 KLLAMTPI---GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATI 296
             +A   +    K  +   + K  ++  +     K  A +A + +   S H +R   AT 
Sbjct: 196 DAVAAWLVHVPEKSLWLFPSGKGHISRIRLYQLIKELAVEADLPRERVSPHVLRHAFATH 255

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
             + GA    L    G   +   + YT    +  + + NSR
Sbjct: 256 LLEGGADLRVLQLLLGHADISTTQIYTHVDSQKLVELVNSR 296


>gi|116491053|ref|YP_810597.1| tyrosine recombinase XerC subunit [Oenococcus oeni PSU-1]
 gi|118586889|ref|ZP_01544323.1| integrase/recombinase [Oenococcus oeni ATCC BAA-1163]
 gi|290890534|ref|ZP_06553609.1| hypothetical protein AWRIB429_0999 [Oenococcus oeni AWRIB429]
 gi|116091778|gb|ABJ56932.1| tyrosine recombinase XerC subunit [Oenococcus oeni PSU-1]
 gi|118432721|gb|EAV39453.1| integrase/recombinase [Oenococcus oeni ATCC BAA-1163]
 gi|290479930|gb|EFD88579.1| hypothetical protein AWRIB429_0999 [Oenococcus oeni AWRIB429]
          Length = 307

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 37/275 (13%), Positives = 85/275 (30%), Gaps = 28/275 (10%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYF----DQIIRKSGDFDYRKITTKHIRSGVE---SRKH 128
            EY +       +  +  ++        +   +  G  D+  I    +R  +     RK 
Sbjct: 12  EEYLQ--AERQYSTLTLKAYREDIGEFVNFFSQNGGFKDFSAIDRFDVRIYLNNLYERKL 69

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
             +S  + ++S+R  + + +       NP  ++E      +        ++ ++    ++
Sbjct: 70  AKTSIARKISSLRSFYHFLIENSLAKKNPFANIEFRSSNKKLPEFLYPAEVIEYLRAAAD 129

Query: 189 GS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVEL----- 237
                  +     E L  +G+R  +        +  N+     T K      +       
Sbjct: 130 PQNDQYLRNSALIELLYATGMRIFEITNLTFSQIDFNSQIVDITGKGKKQRIIPFGKPAL 189

Query: 238 ------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGV 289
                      K +          FIN   +++  T      K  + ++ +  N   H +
Sbjct: 190 ASLKQYLPWREKTMQKFSEKHSYIFINTRGRQLTETGAEYILKQVSKRSKLTANIHPHML 249

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           R   AT   + GA    +    G  ++   + YT 
Sbjct: 250 RHSFATHLLNNGADIRTVQELLGHASLSTTQIYTH 284


>gi|237745687|ref|ZP_04576167.1| phage integrase [Oxalobacter formigenes HOxBLS]
 gi|229377038|gb|EEO27129.1| phage integrase [Oxalobacter formigenes HOxBLS]
          Length = 348

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 54/323 (16%), Positives = 110/323 (34%), Gaps = 26/323 (8%)

Query: 16  TRHGKIIYYFRKGHGRRIRLPYPHESTF---IPAYMSALTGSTPKREYINSPRKKP---T 69
            R     ++ +       R+     +        Y   +  +    E +N   ++     
Sbjct: 5   KRKDSSYWWIKITSPGGKRIQQSTGTEDKMKAQEYHDKIKAALWDEEKLNKKPQRTWQEA 64

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK--HIRSGVESRK 127
           T++WL      S    +    ++         +    G+    +I+     +    + ++
Sbjct: 65  TVRWLNE---TSDKRTTREDITK------LRWLHPILGNLTLDQISLPVIDMIRERKLKE 115

Query: 128 HTPSSAIQFLTSMRVLFKWAV-RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            + ++  ++L  +R +   A    E++   P   ++  K      R  T E   +  +  
Sbjct: 116 ASKATVNRYLNLVRAILNRAKNEWEWIDGFP--KIKMYKESNNRNRSLTPEQADKLLAEL 173

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS--IKTQKTGTIITVELPDGFMKL 244
            E    R    F LY+GLR  +      +H+   +    +   K G  + V L D  M +
Sbjct: 174 PE--HQRDIVLFALYTGLRQRNVLDMEWEHVDLELRHAYVPRTKNGEALAVPLNDVAMSI 231

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGAT 303
           +         F  +   + +     ++ ++    +AG+ +   H +R   AT    AG  
Sbjct: 232 ITKQIGKHPQFVFSYRGKHIRYAN-TLAWRKALVRAGITDFRWHDLRHTWATWQRKAGTP 290

Query: 304 AHELMATYGWKTVDQAETYTKGA 326
            HEL    GWKT    E Y   A
Sbjct: 291 THELQHLGGWKTRAMVERYAHIA 313


>gi|183221814|ref|YP_001839810.1| tyrosine recombinase XerC [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
 gi|189911886|ref|YP_001963441.1| tyrosine site-specific recombinase XerC [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167776562|gb|ABZ94863.1| Tyrosine site-specific recombinase XerC [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167780236|gb|ABZ98534.1| Tyrosine recombinase XerC [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
          Length = 311

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 54/293 (18%), Positives = 100/293 (34%), Gaps = 22/293 (7%)

Query: 60  YINSPRKKPTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIR--KSGDFDYRKITT 116
            +  P   P  +  L   YR       + + ++  ++              + D   +  
Sbjct: 7   EVQIPEHFPQVMADLFRSYRTYLKIEKNYSEHTLFAYLRDLKFFFEFCLKEEIDILSVDV 66

Query: 117 KHIRSGVESRKHTP----SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
             +R+     K +      +  + L+S+R  +K+  R+E +  NP L V  PK K    +
Sbjct: 67  LDVRAYFADLKSSKKQDKRTQSRKLSSLRTFYKFLFREEKIGANPILQVSFPKTKKRLPK 126

Query: 173 PWTKEDMQQFKSFWS------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226
            +T  + +    +         G + +   E L  +GLR  +   A +  L   + S+K 
Sbjct: 127 NFTPIETEDILDYEDPEKKEVLGKRDKAIVEVLYSTGLRVFELVNAKLSDLNEELTSLKV 186

Query: 227 -QKTGTIITVELPDG----FMKLLAMTPIGK-ETFFINNDKQKMNATQFSIWFKAKATKA 280
             K      V +         + L     G  E  F+N    K+           + +  
Sbjct: 187 MGKRRKERFVFIGPEAKVALQEYLDERGNGGPEEIFLNQRGGKLTTRGIRYILSERRSVM 246

Query: 281 GVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           G+ K  + H  R   AT   +AGA    +    G  ++   + Y     R RL
Sbjct: 247 GMEKAITPHKFRHTFATDLLNAGADIRAVQELLGHSSLSSTQVYL-SVSRDRL 298


>gi|37678273|ref|NP_932882.1| site-specific tyrosine recombinase XerC [Vibrio vulnificus YJ016]
 gi|37197012|dbj|BAC92853.1| site-specific recombinase XerC [Vibrio vulnificus YJ016]
          Length = 322

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 34/280 (12%), Positives = 86/280 (30%), Gaps = 22/280 (7%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV------ESRK 127
           + ++ +       L+++++ +++   + +         +                     
Sbjct: 23  LDQFYEYLRAEKGLSLHTQRNYKQQLETMAEHLHSMGLKAWPQVDAGWVRQLAGKGMREG 82

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-- 185
              SS    L+S+R  F + + +  +  NP   V  P++K    +    +++ Q      
Sbjct: 83  MKASSIATRLSSLRSFFDFLILRGILTANPAKGVSAPRKKRPLPKNLDVDEVNQLLEVNE 142

Query: 186 -WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE------- 236
                 + R   E +  +GLR ++     V+ +      I+   K      V        
Sbjct: 143 DDPLAIRDRAIMELMYGAGLRLAELVDIDVRDVHLRSGEIRVIGKGNKERKVPFAGMAVE 202

Query: 237 -LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293
            +         +    +   F++    +++             K  V  + + H +R   
Sbjct: 203 WVGKWLKVRSGLADPSEPALFVSKLGTRISHRSVQKRMAEWGQKQAVASHITPHKLRHSF 262

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           AT   ++      +    G + +   + YT   D   L  
Sbjct: 263 ATHILESSNNLRAVQELLGHENISTTQIYTH-LDFQHLAD 301


>gi|23099003|ref|NP_692469.1| site-specific tyrosine recombinase XerC [Oceanobacillus iheyensis
           HTE831]
 gi|34222801|sp|Q7ZAM5|XERC_OCEIH RecName: Full=Tyrosine recombinase xerC
 gi|22777231|dbj|BAC13504.1| integrase:recombinase [Oceanobacillus iheyensis HTE831]
          Length = 305

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 44/265 (16%), Positives = 97/265 (36%), Gaps = 25/265 (9%)

Query: 85  GSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIR---SGVESRKHTPSSAIQFLT 138
            + +  +   + +  +     +R  G      +T K +R   + +  ++ +  S  + ++
Sbjct: 19  KNASPYTVKYYRNDLEIFADFLRSEGLSHIANVTYKDVRIFLTSLYEQELSRRSVSRKIS 78

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194
           ++R  +++  R+ YV  NP + +  PK          +E++ +           G + + 
Sbjct: 79  TLRSFYRFLEREGYVEGNPFVQLHLPKTSKPVPGFLYQEELDKLFEVNDITTPLGQRDQA 138

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVE------------LPDGF 241
             E L  +G+R S+     +Q +   I +I  +  G     V             L +G 
Sbjct: 139 LLEMLYGTGIRVSECQNLRLQDIDFAIGTIFVRGKGRKERYVPFGSFAEIALETYLQEGR 198

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISAD 299
            KLL  +    E  F+N+    +              +A +  +   H +R   AT   +
Sbjct: 199 TKLLEKSNSDTEFIFLNSRGGHLTNRGIRTILNKIVERASLTVHVHPHKLRHTFATHLLN 258

Query: 300 AGATAHELMATYGWKTVDQAETYTK 324
            GA    +    G +++   + YT 
Sbjct: 259 EGADLRSVQELLGHESLSSTQIYTH 283


>gi|126462249|ref|YP_001043363.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17029]
 gi|126103913|gb|ABN76591.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17029]
          Length = 311

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 54/287 (18%), Positives = 103/287 (35%), Gaps = 33/287 (11%)

Query: 74  LISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGV---ESRK 127
            IS + ++ A     A N+R+++           G    D+   T   + + +   E++ 
Sbjct: 9   WISAFLEAQAAELDAARNTRLAYGRDLKDYATWLGRRSEDFLTATRDTVEAYLTFCEAQG 68

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ-QFKSFW 186
            + ++  + L+S+R L+++A  + + A NP + +  P R     +    E++    ++  
Sbjct: 69  LSSATRARRLSSIRQLYRFAHEEGWRADNPAIRISGPGRSKRLPKTLEIEEVDWLLEAAR 128

Query: 187 SEGSQP------RLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPD 239
            +G +       R   E L  +G+R S+     V   + +    +   K G    V L  
Sbjct: 129 DKGRRAEDQIRNRCLLELLYATGMRVSEMVGLPVAAARGSPRMILVRGKGGKERMVPLSP 188

Query: 240 GFMKLLA----------------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
              + LA                  P  +  F  +     +    F +  K  A  AGV+
Sbjct: 189 PACEALADWLRARDAAEAQGQKAGRPASRFLFPGSGAAGHLTREYFYVLVKQIAVLAGVD 248

Query: 284 ---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
               + H +R   AT     GA    +    G   +   E YT   D
Sbjct: 249 PAKVTPHTLRHAFATHLLAGGADLRVIQTLLGHADLSTTEIYTHVLD 295


>gi|325290382|ref|YP_004266563.1| Tyrosine recombinase xerC [Syntrophobotulus glycolicus DSM 8271]
 gi|324965783|gb|ADY56562.1| Tyrosine recombinase xerC [Syntrophobotulus glycolicus DSM 8271]
          Length = 300

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 50/274 (18%), Positives = 95/274 (34%), Gaps = 24/274 (8%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIR-----------KSGDFDYRKITTKHIRSGV 123
           I  +       +L++++  +++S   Q              +       KI  +     +
Sbjct: 7   IDRFASYQKARNLSLHTISAYQSDLVQFTEFAAAELGVEFAEVELDLVDKIIVRTYIFQL 66

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
             +  +  +  + L ++R  F++  R+  V  +P L +  PK      R    E M++  
Sbjct: 67  ADKGLSRRTVARKLAAIRAFFRYLSREGIVKQSPMLKINTPKLGQTLPRFLYPEHMEKLL 126

Query: 184 SFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELP 238
           +   +    G + +L  E L  SGLR S+     ++ L      ++   K G    V L 
Sbjct: 127 AVLDDSSEMGQRDKLIIELLYGSGLRVSELVGINIEDLDLESAFVRIRGKGGKERIVPLT 186

Query: 239 D----GFMKLLAMTPIGK--ETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVR 290
           +       + L      +  E    N    +M+             KA +N+    H +R
Sbjct: 187 EPAVLELRRYLDRWGRSQHQEALIRNYQGTRMSTRSVRRILDKLEKKANLNQHIYPHMLR 246

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              AT   D GA    +    G K +   + YT 
Sbjct: 247 HTFATHLLDGGADLRSVQELLGHKKLSSTQIYTH 280


>gi|301063905|ref|ZP_07204380.1| tyrosine recombinase XerC [delta proteobacterium NaphS2]
 gi|300441980|gb|EFK06270.1| tyrosine recombinase XerC [delta proteobacterium NaphS2]
          Length = 329

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 47/274 (17%), Positives = 93/274 (33%), Gaps = 34/274 (12%)

Query: 85  GSLAVNSRISFESYFDQ------------IIRKSGDFDYRKITTKHIRSGVESR--KHTP 130
              + +++ ++    +Q            +     DF   +I +K IR  V S   K   
Sbjct: 38  KGYSKHTQRNYRVDLEQFASFVAREMALPLKETDLDFSIEEIESKTIRKFVGSLYGKLKR 97

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---- 186
           ++  + L+++R  F +  ++E +  NP   ++ PK +         +++ +         
Sbjct: 98  TTIARKLSAVRSFFLFLEKEELIKTNPAGELQSPKLEKYIPSHLPVDEVFRLMDLPNRER 157

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLL 245
           S G +     E L   G+R ++     V  +  +      T K      V +    +K +
Sbjct: 158 SLGLRDLAILEVLYSCGIRVAELAGMNVSSIDHDQRLVKVTGKGNKERLVPIGRQALKAV 217

Query: 246 -------------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVR 290
                        A      E   +N    ++         K  A   G+  + S H +R
Sbjct: 218 KAYLAATDEDRRRAALRGEGEPLIMNFRGGRLTTRSIGRIVKKYAGAGGLTEDISPHSMR 277

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              AT   D GA    +    G K++   + YT 
Sbjct: 278 HTFATHMLDGGADLRSVQELLGHKSLSTTQKYTH 311


>gi|259906886|ref|YP_002647242.1| site-specific tyrosine recombinase XerC [Erwinia pyrifoliae Ep1/96]
 gi|224962508|emb|CAX53963.1| Tyrosine recombinase XerC [Erwinia pyrifoliae Ep1/96]
 gi|283476679|emb|CAY72508.1| Tyrosine recombinase xerC [Erwinia pyrifoliae DSM 12163]
 gi|310766134|gb|ADP11084.1| site-specific tyrosine recombinase XerC [Erwinia sp. Ejp617]
          Length = 302

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 36/259 (13%), Positives = 76/259 (29%), Gaps = 19/259 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE------SRKHTPSSAIQFLT 138
             L+  ++I +      II    +    +                      P+S    L+
Sbjct: 22  RQLSPLTQIGYRRQLSAIIVLLDELKVVEWARLDAALVRALAARSTRSGLKPASLALRLS 81

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLA 195
           ++R    W V Q  +  NP   V  P+      +    +++ +            + R  
Sbjct: 82  ALRSFLDWLVSQGAIKANPAKGVATPRAARHLPKNIDVDEVNRLLDIDLNDPLAVRDRAM 141

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLAMT------ 248
            E +  +GLR S+     + HL           K      + +    +  +         
Sbjct: 142 LEVMYGAGLRLSELVGIDLGHLDLASGEVWVVGKGSKERRLPMGRTAVHWIENWLEMREL 201

Query: 249 -PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAH 305
                   F++N  ++++       F     K G+  +   H +R   AT   ++     
Sbjct: 202 FEPQDNALFLSNKGKRISTRNVQKRFAEWGVKQGMSSHIHPHKLRHSFATHLLESSGDLR 261

Query: 306 ELMATYGWKTVDQAETYTK 324
            +    G   +   + YT 
Sbjct: 262 AVQELLGHANLTTTQIYTH 280


>gi|319954827|ref|YP_004166094.1| integrase family protein [Cellulophaga algicola DSM 14237]
 gi|319423487|gb|ADV50596.1| integrase family protein [Cellulophaga algicola DSM 14237]
          Length = 375

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 47/286 (16%), Positives = 100/286 (34%), Gaps = 12/286 (4%)

Query: 59  EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH 118
           E   S + K    K+   EY         A N+  ++ S F+  I      D   +    
Sbjct: 92  ERYRSRKPKDG-FKYCPEEYLLKLELKRYADNTVRNYVSCFEGFINYYYTIDPIALNEID 150

Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
           +R  ++       S   ++       K+     +   N   ++ERP+++ +     +K++
Sbjct: 151 VRKYLQKLIQEGKS-NSYINMAVNSIKFFYEIVHGMPNRFYAIERPRKERQLPEVISKDE 209

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG------TI 232
           +    +  +   + R     L  +GLR ++     +  + +    +K +         ++
Sbjct: 210 IVLIMNNTNT-LKHRCIIGLLYSAGLRRAELLNLNITDIDSKRMVVKIKNAKGNKDRISL 268

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290
           ++  +     +        K   F      K + T       + A +AG+ K  + H +R
Sbjct: 269 LSPSILKDLQEYYKEYRPKKF-LFEGQSGGKYSPTSVLNLISSAALRAGILKRVTPHMLR 327

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
              AT   + G     +    G  +    E YT  A+R  + IK+ 
Sbjct: 328 HSFATHLLENGTDIRHIQLLLGHSSTKTTEIYTHVANRSFMEIKDL 373


>gi|15617948|ref|NP_224232.1| site-specific tyrosine recombinase XerC [Chlamydophila pneumoniae
           CWL029]
 gi|15835561|ref|NP_300085.1| site-specific tyrosine recombinase XerC [Chlamydophila pneumoniae
           J138]
 gi|16753021|ref|NP_445294.1| site-specific tyrosine recombinase XerC [Chlamydophila pneumoniae
           AR39]
 gi|33241363|ref|NP_876304.1| site-specific tyrosine recombinase XerC [Chlamydophila pneumoniae
           TW-183]
 gi|34223089|sp|Q9Z9F7|XERC_CHLPN RecName: Full=Tyrosine recombinase xerC
 gi|4376276|gb|AAD18177.1| Integrase/recombinase [Chlamydophila pneumoniae CWL029]
 gi|8163493|gb|AAF73701.1| integrase/recombinase, phage integrase family [Chlamydophila
           pneumoniae AR39]
 gi|8978399|dbj|BAA98236.1| integrase/recombinase [Chlamydophila pneumoniae J138]
 gi|33235871|gb|AAP97961.1| site-specific integrase/recombinase [Chlamydophila pneumoniae
           TW-183]
          Length = 312

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 48/283 (16%), Positives = 106/283 (37%), Gaps = 29/283 (10%)

Query: 66  KKPTTLKWLISEYRKSAHW----GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR- 120
             P TL+    +      +    G+LA +S +   +      RK  +  +   T +H+R 
Sbjct: 18  ASPHTLRNYCLDLNGLKIFLEERGNLAPSSPLQLATE----KRKVSELPFSLFTKEHVRM 73

Query: 121 --SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
             + +        +  + L+S++    + V Q+ +  NP  ++  P+   E   P T   
Sbjct: 74  YIAKLIENGKAKRTIKRCLSSIKSFAHYCVIQKILLENPAETIHGPRLPKELPSPMTYAQ 133

Query: 179 MQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTI 232
           ++   +        G + R   E    SGLR S+      Q      ++  I+  K    
Sbjct: 134 VEVLMATPDISKYHGLRDRCLMELFYSSGLRISEIVAVNKQDFDLSTHLIRIR-GKGKKE 192

Query: 233 ITVELPDGFMKLLAMT---PIGK------ETFFINNDKQKMNATQFSIWFKAKATKAGV- 282
             + +    ++ + +    P  K      +  F+N   ++++       F+    ++G+ 
Sbjct: 193 RIIPVTSNAIQWIQIYLNHPDRKRLEKDPQAIFLNRFGRRISTRSIDRSFQEYLRRSGLS 252

Query: 283 -NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            + + H +R   AT   ++G     + A  G  +++    YT+
Sbjct: 253 GHITPHTIRHTIATHWLESGMDLKTIQALLGHSSLETTTVYTQ 295


>gi|189499779|ref|YP_001959249.1| tyrosine recombinase XerD [Chlorobium phaeobacteroides BS1]
 gi|189495220|gb|ACE03768.1| tyrosine recombinase XerD [Chlorobium phaeobacteroides BS1]
          Length = 305

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 34/265 (12%), Positives = 94/265 (35%), Gaps = 25/265 (9%)

Query: 85  GSLAVNSRISFESYFDQ--IIRKSGDFDYRKI---TTKHIRSGVESRKHTPSSAIQFLTS 139
            + + ++  S+ +  ++  +  +  +   + +     +H    +        S  + +++
Sbjct: 24  RNFSSHTITSYANDLNRYLLFMQHSEKQIKAVVLTDIQHFIQELHEAGLESRSISRNISA 83

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEG---SQP 192
           +R   K+ +R+  +  N   S+ +PK         + +++ +           G    + 
Sbjct: 84  IRSFHKFLIRENILEENAAKSLHQPKPGLHLPTVLSVDEVFRLLDAPLLEKPPGKYFLRD 143

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQH-LQNNIFSIKTQKTGTIITVELPDGFMKLLA----- 246
           ++  E L  +G+R S+       +   +  F+    K      V +    ++ +      
Sbjct: 144 KVLLELLYATGVRVSELINIQQSNCYLDAGFARIFGKGSKERLVPVGHTAIEWIRRYQQE 203

Query: 247 -----MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
                      +  F+N   ++++        +  ++ AG+ K  S H +R   AT   +
Sbjct: 204 LRLNMANRESGDYLFLNARGKQLSRMSAWNIVRRLSSVAGLTKKISPHTLRHTFATHLLE 263

Query: 300 AGATAHELMATYGWKTVDQAETYTK 324
            GA    +    G  ++   + YT 
Sbjct: 264 GGADLRAVQEMLGHSSIIATQIYTH 288


>gi|320354502|ref|YP_004195841.1| tyrosine recombinase XerC [Desulfobulbus propionicus DSM 2032]
 gi|320123004|gb|ADW18550.1| tyrosine recombinase XerC [Desulfobulbus propionicus DSM 2032]
          Length = 303

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 44/280 (15%), Positives = 103/280 (36%), Gaps = 33/280 (11%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFES-YFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           ++WL+ E          + ++   ++    +      G      IT+  +++ V S   +
Sbjct: 9   VRWLLVE-------KGYSPHTADGYQRDLLEFQRFCGGVLSPESITSSLVQAFVGSLYAS 61

Query: 130 PSSAI--QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFK 183
            +SA   + L+++R  F++ +R++ +  +P   +  PK         T +++    +   
Sbjct: 62  NASASVARKLSALRTFFRFLLREKVIESDPVAGIVGPKLGHALPAFLTVDEVFSLLETPA 121

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVE------ 236
           +      + R   E L  +G+R ++      + +      ++ +  G     V       
Sbjct: 122 TSDRYWRRDRAVMEVLYATGMRVAELVGCNREDVDLAAEMVRVRGKGRKERLVPFGRAAH 181

Query: 237 ------LPDGFMKLLAMTPIGK----ETFFINNDKQKMNATQFSIWFKAKATKAGVNKS- 285
                 LP+     +A    G+       F+N    +++A       +  A +AG+  + 
Sbjct: 182 EALEQYLPEREALCIARVQRGRKPEQRALFLNGRGTRLSARSVERSIQTYALRAGIGVTV 241

Query: 286 -AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             H +R   AT   + GA    +    G  ++   + YT 
Sbjct: 242 TPHALRHSFATHLLEMGADLRTVQELLGHVSLSTTQKYTH 281


>gi|256851129|ref|ZP_05556518.1| tyrosine recombinase XerC [Lactobacillus jensenii 27-2-CHN]
 gi|260660553|ref|ZP_05861468.1| tyrosine recombinase XerC [Lactobacillus jensenii 115-3-CHN]
 gi|282932232|ref|ZP_06337676.1| tyrosine recombinase XerC [Lactobacillus jensenii 208-1]
 gi|297205994|ref|ZP_06923389.1| tyrosine recombinase XerC [Lactobacillus jensenii JV-V16]
 gi|256616191|gb|EEU21379.1| tyrosine recombinase XerC [Lactobacillus jensenii 27-2-CHN]
 gi|260548275|gb|EEX24250.1| tyrosine recombinase XerC [Lactobacillus jensenii 115-3-CHN]
 gi|281303627|gb|EFA95785.1| tyrosine recombinase XerC [Lactobacillus jensenii 208-1]
 gi|297149120|gb|EFH29418.1| tyrosine recombinase XerC [Lactobacillus jensenii JV-V16]
          Length = 302

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 43/280 (15%), Positives = 105/280 (37%), Gaps = 25/280 (8%)

Query: 70  TLKWLISEYRKSAHW-GSLAVNSRISFESYF----DQIIRKSGDFDYRKITTKHIRSGVE 124
           T K L+ +++    +    +  +  ++ +      D      G   + +++++ +   + 
Sbjct: 2   TKKSLLEQFKDYLAYERGYSNLTLTAYINDLKQAEDFWKNNGGFNGFEQVSSRDVEIFIT 61

Query: 125 SRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
           S      + +S  + L+S++ L+K+  R+  VA++P  +V   ++  +    + + ++++
Sbjct: 62  SLASAGLSQASQARKLSSLKSLYKFLTRRNLVAVDPTQTVSIHRKSKKLPEFFYEPEIKK 121

Query: 182 FKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVE 236
                S       + +  FE    +G+R S+     +Q +  +    +   K      V 
Sbjct: 122 VLDSLSASDKFTVRNKAMFELFYATGMRVSEVSNLTLQQVDFDVQMILVHGKGNKDRYVP 181

Query: 237 LPDGFMKLLAMT---------PIGKETF-FINNDKQKMNATQFSIWFKAKATKAGV--NK 284
             D     L            P     F F++N   ++ +       +    K G+  N 
Sbjct: 182 FGDYAKASLLRYLNEARSLFNPDENNHFVFLDNRGHQLTSRGIEYIMRKVFQKGGLSANV 241

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             H +R   AT   + GA    +    G +++   + YT 
Sbjct: 242 HPHELRHTFATQMLNNGADLRSVQELLGHESLSTTQIYTH 281


>gi|78355959|ref|YP_387408.1| integrase/recombinase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78218364|gb|ABB37713.1| integrase/recombinase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 304

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 42/270 (15%), Positives = 85/270 (31%), Gaps = 28/270 (10%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---------KHTPSSAI-- 134
             +  +  ++      + R + +     I        ++              P SA   
Sbjct: 25  GRSPATIAAYRRDLALVARVADELAPGIICRAITAGLLDRAFSAGAVTESGRGPRSAASL 84

Query: 135 -QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS--- 190
            +   ++R  F WA     V  NP  S+   +   +     T  + ++        +   
Sbjct: 85  HRMKAAVRAFFAWASEAGVVDDNPARSIRMHRLPRKLPVFLTTAEKKRLLKELKGRTDFS 144

Query: 191 --QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE---------LPD 239
             + R   E LL +G+R  +     +  +  +   ++ +  G +  V+         L  
Sbjct: 145 ALRDRAMIEVLLGTGIRLGELAALDMDDIDLDAKHLRVRAKGNVPQVKFIKTDLRTLLRR 204

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS 297
              +         E  F++N   ++   Q +        KAG+ K  + HG+R   AT  
Sbjct: 205 YLAERRRHGRPEMEALFLSNRDGRLCQRQIANRLAHWLRKAGIEKELTPHGLRHTFATHL 264

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGAD 327
             A      +    G + V   + YT   D
Sbjct: 265 YGATNDLLVVQRALGHRDVSTTQIYTHLVD 294


>gi|220931948|ref|YP_002508856.1| phage integrase family protein [Halothermothrix orenii H 168]
 gi|219993258|gb|ACL69861.1| phage integrase family protein [Halothermothrix orenii H 168]
          Length = 310

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 51/284 (17%), Positives = 96/284 (33%), Gaps = 34/284 (11%)

Query: 85  GSLAVNSRISFESYFD----QIIRKSG---DFDYRKITTKHIRSGVES----RKHTPSSA 133
              +  +   +E   +     +  + G   DF   KI   HI   +        + P++ 
Sbjct: 22  RGYSPLTVKEYERDLNLFYIYLTNEMGFKNDFSLDKINKYHIAEFLGDTILVHDNAPTTR 81

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP---WTKED--MQQFKSFWSE 188
            + L S+R  FK+ V+ EY+ +NP  ++E  K +                ++  K     
Sbjct: 82  NRKLYSIRSFFKFLVKYEYIKVNPAATIEASKTEVRAEPIYMKLNDAQKYIETIKKHGGV 141

Query: 189 GSQPRLAF-EFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLA 246
             +  LA  +  LY+GLR S+     +  +     SIK   K      V L    +  + 
Sbjct: 142 NLKRDLAIVKLFLYAGLRVSELVGLDLDDIDFKDQSIKFYGKGKKERYVPLHPDVIMSIK 201

Query: 247 MTPIGKE-----------TFFINNDKQKMNATQFSIWFKAKATKAGVN----KSAHGVRK 291
                +              F++   ++++     +  K  A  AGV      + H +R 
Sbjct: 202 NYFPERNEIQPKNEDAIKALFLSRHGKRISVRTIQMMVKKYAKLAGVKNADKITPHKLRH 261

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIK 334
             A++          L    G   +   + YT     + +  IK
Sbjct: 262 TFASLLYHKTKDLKILQDLLGHADISTTQIYTHTDVKQRKKAIK 305


>gi|313901171|ref|ZP_07834659.1| tyrosine recombinase XerC [Clostridium sp. HGF2]
 gi|312954129|gb|EFR35809.1| tyrosine recombinase XerC [Clostridium sp. HGF2]
          Length = 302

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 49/288 (17%), Positives = 108/288 (37%), Gaps = 30/288 (10%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGVESRKHTP--- 130
           +Y  S +  S +V++R +++    + I   ++ G  + +      + + + S +  P   
Sbjct: 10  QYMDSLN--SGSVHTRAAYQRDIREFISFLQEEGIEELQDADRIIVMNYIASLREKPGVS 67

Query: 131 -----SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
                S+  + L+S+R  +++      +  NP L  + PKR          ++M  F S 
Sbjct: 68  GEMKNSTIARKLSSLRSFYRYLNEYVGITQNPFLYFKTPKRAKRIPEFLFYDEMDTFLSS 127

Query: 186 W----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITV---- 235
           +     +G + R  FE +   GLR S++    +  +   + I +I  +     I      
Sbjct: 128 FDLDTPDGLRDRAMFELMYACGLRVSEAASLRLYDIDLHDRILTIHGKGNKQRIVPFYAL 187

Query: 236 --ELPDGFMKLLAMT--PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGV 289
             EL + +++ +         +  FIN   + +         +  A    +  +   H  
Sbjct: 188 AGELLEHYLQEVRPQWMKEEHDIVFINQRGKGLTTRGIQYRMQLAADTCSLSVHVHPHMF 247

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNS 336
           R   AT   D GA    +    G  ++   + Y     +R++    ++
Sbjct: 248 RHSFATHLLDNGADLRVVQELLGHASLSTTQVYVHVTQERLKKAYTHA 295


>gi|171316503|ref|ZP_02905720.1| integrase family protein [Burkholderia ambifaria MEX-5]
 gi|171098337|gb|EDT43142.1| integrase family protein [Burkholderia ambifaria MEX-5]
          Length = 342

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 59/349 (16%), Positives = 114/349 (32%), Gaps = 37/349 (10%)

Query: 1   MTPSLRLPPFVTKERTRH---GKIIYYFRKG--HGRRIRLPYPHESTFIPAYMSALTGST 55
           M    + P  + + R+R    G + YY+  G   GRRI  P   +        + L G+ 
Sbjct: 1   MAGKAQTPGAIPRFRSRKNADGSLRYYYDHGEVDGRRILEPLGTDRVVALQRWAELEGAR 60

Query: 56  PKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT 115
                  S      T   L   YR        +  ++  ++ +  ++    GD +   +T
Sbjct: 61  A-----PSSETTRHTFAMLGQAYRV-RELPQKSAATQRMYDLFLSRLAAVIGDRELDTLT 114

Query: 116 TKHIRSGVESRKHTPS--SAIQFLTSMRVLFKWAVRQEYVA-INPCLSVERPKRKTEGIR 172
              + +   +        +A +    + ++         +   NPC  V R K++T    
Sbjct: 115 PADVATIWRATAEKRGVVTANRTKAVLSLVLNCGRLWGMMTIANPCAGV-RGKKETGRQD 173

Query: 173 PWTKEDMQQFKSFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
               +++  + + ++   QP R A +       R SD  R    ++       +TQKTG 
Sbjct: 174 ILIDDEL--YAAVYTVADQPLRNAMDLADLCAQRPSDVLRVQRSNIVRGNLIFRTQKTGA 231

Query: 232 IITVELPDGFMKLLAMTPI-------GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284
            +TV++      L+                   + +   +   +    F     +AG++K
Sbjct: 232 FVTVQITGDLAALIERLLAWRGSKVDVSPYLLRDEEGYPLTKGKLRSRFDKARERAGIDK 291

Query: 285 SAHGVRKFSATISADAGATAHEL-------MATYGWKTVDQAETYTKGA 326
           +     KF        G T   +           G         Y +GA
Sbjct: 292 A-----KFQFRDLRARGVTHKTIDEGLEAGQRLAGHSGPGMTARYVRGA 335


>gi|307264510|ref|ZP_07546095.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           13 str. N273]
 gi|306870207|gb|EFN01966.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           13 str. N273]
          Length = 336

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 36/259 (13%), Positives = 89/259 (34%), Gaps = 19/259 (7%)

Query: 85  GSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLT 138
              + ++  +++     +     ++G   ++++ +  +R  +     +     S    L 
Sbjct: 53  KQASQHTLSNYQRQLLAVSDMLSQAGISTWQEVNSATVRWIIAQSNKQGLGAKSIALRLV 112

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS---FWSEGSQPRLA 195
           ++R  F + +RQE +++NP + ++ PK      +    E + Q  +         +    
Sbjct: 113 ALRQWFSYLIRQEKMSVNPAVGIKAPKASKRLPKNIDAEQIGQLLTSDSHEPSDLRDLAM 172

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMT------ 248
            E +  SGLR S+     +  +      ++   K      V +    ++ L         
Sbjct: 173 MELMYSSGLRLSELQGLDLGDMDLAGREVRLLGKGNKERIVPIGSKALEALNRWLAVRNQ 232

Query: 249 -PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAH 305
                   F+N    +++     +  +    K G+  +   H +R   AT   +A     
Sbjct: 233 FKPQDNAVFLNKRGGRLSHRSIQLVMQKWGEKQGLESHLHPHKLRHSFATHMLEASGDLR 292

Query: 306 ELMATYGWKTVDQAETYTK 324
            +    G   +   + YT 
Sbjct: 293 AVQELLGHSNLATTQIYTH 311


>gi|296394365|ref|YP_003659249.1| integrase family protein [Segniliparus rotundus DSM 44985]
 gi|296181512|gb|ADG98418.1| integrase family protein [Segniliparus rotundus DSM 44985]
          Length = 304

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 44/292 (15%), Positives = 100/292 (34%), Gaps = 38/292 (13%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH----------IRSGV 123
           +++Y +   +    + N+  ++          + D + +  T  H          +R  +
Sbjct: 5   LAQYERHLRFERGRSPNTVRAYLGDLRAYFGPAVDGNDQDDTAAHEVLGAVTIADLRGWL 64

Query: 124 ESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                   + ++  +  + M+  F+WA+R      +P   +  PK +        ++  +
Sbjct: 65  SEMTAEGASRATLARRASGMKTFFEWAMRNGLAEHDPTARLSTPKLRRTLPHVLRQDQAE 124

Query: 181 Q------FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTII 233
           Q       +       + +L  E L  +G+R  + C   +  +  +   +    K     
Sbjct: 125 QALGPAPHQREGPLALRDQLILELLYGTGMRVGELCGLDLDDIDQDRRLATVLGKGDKQR 184

Query: 234 TVE------------LPDGFMKLLAMTPIGKETFFINNDKQKM-NATQFSIWFKAKATKA 280
            V             L DG   L+   P       +    +++   T   +  +  A +A
Sbjct: 185 AVPFGAKAADALAAWLRDGRPALV--GPRSGAALLLGARGKRLDPRTARRVVQERVAEEA 242

Query: 281 GVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330
           G+     HG+R  +AT   + GA    +    G  ++   + YT    +R+R
Sbjct: 243 GLPSLGPHGLRHSAATHLLEGGADLRVVQEILGHSSLATTQIYTHVSVERLR 294


>gi|223044229|ref|ZP_03614266.1| tyrosine recombinase XerC [Staphylococcus capitis SK14]
 gi|222442379|gb|EEE48487.1| tyrosine recombinase XerC [Staphylococcus capitis SK14]
          Length = 296

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 39/265 (14%), Positives = 94/265 (35%), Gaps = 20/265 (7%)

Query: 85  GSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVE---SRKHTPSSAIQFLTS 139
            + +  +  S+     Q      S   D      K  R+ +    S     ++  + +++
Sbjct: 16  RNFSEYTLKSYHDDLIQFNDFLVSEHLDLATFEYKDARNYLSFLYSHNLKRTTVSRKIST 75

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLA 195
           +R  +++ + Q+   +NP + +  PK++    + + +E+M+           +G + R+ 
Sbjct: 76  LRTFYEYWMTQDESIVNPFVQLVHPKKEQYLPQFFYEEEMEALFQTVKQDSKKGIRDRVI 135

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE--------LPDGFMKLLA 246
            E L  +G+R S+     ++ +  N+  +K   K      +         +     +   
Sbjct: 136 IELLYATGIRVSELVNIKIKDIDMNLPGVKVLGKGNKERFIPFGEFCKQSIERYLDEFQP 195

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATK-AGV-NKSAHGVRKFSATISADAGATA 304
                 E   +N +   +              + AGV +   H +R   AT   + GA  
Sbjct: 196 RKTNDHEYLIVNMNGAPITERGVRYVLNDVVKRTAGVTDIHPHKLRHTFATHLLNQGADL 255

Query: 305 HELMATYGWKTVDQAETYTKGADRI 329
             + +  G   +     YT  +++ 
Sbjct: 256 RTVQSLLGHVNLSTTGRYTHVSNQQ 280


>gi|269836497|ref|YP_003318725.1| integrase family protein [Sphaerobacter thermophilus DSM 20745]
 gi|269785760|gb|ACZ37903.1| integrase family protein [Sphaerobacter thermophilus DSM 20745]
          Length = 306

 Score =  119 bits (299), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 39/288 (13%), Positives = 98/288 (34%), Gaps = 26/288 (9%)

Query: 85  GSLAVNSRISFESYFDQ----IIRKSGDFDYRKIT---TKHIRSGVESRKHTPSSAIQFL 137
              + N+  ++ +   Q    +  +     + ++T     +    +  R +  ++  + +
Sbjct: 16  RGFSPNTVSAYRNDLSQFCHFLCEQHVLQSWAELTGTILTNYVLYLRERGYANATVARKV 75

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF-----KSFWSEGSQP 192
            +++    + V    +  +P   +  PK      R  T E ++       +    E  + 
Sbjct: 76  AAVKSFCHYLVECGELRHDPAAELPSPKVDKFIPRAITPEQVEALLAQPARERTPEALRD 135

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-ITVELPDGFMKLLA----- 246
           +   E L  SG+R S+     V  L      ++          V L    +  L      
Sbjct: 136 KAMLETLYASGMRVSELTALNVDDLDLEAGRVRCGNKPERQRWVPLSSSAIAALDEYLQL 195

Query: 247 -----MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADA 300
                     ++  F+N+   ++    F +  K+ A  A + + + H +R   A  +   
Sbjct: 196 GRPFLRQSPAEQALFLNHRGSRLTRQGFWLILKSYAEAAELGDITPHTLRHTFAAHALTR 255

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKN--SRRISSVVDSD 346
           G    E+    G  ++   + Y + A ++     +     +++  D+D
Sbjct: 256 GRALREVQQVLGHVSISTTQVYQQVAAQVGRANGHALVSTVAACYDND 303


>gi|255311152|ref|ZP_05353722.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis
           6276]
 gi|255317453|ref|ZP_05358699.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis
           6276s]
          Length = 315

 Score =  119 bits (299), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 80/223 (35%), Gaps = 18/223 (8%)

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           H+  +  + L++++   ++ V+ + +  NP   +  P+   E   P T E +    +   
Sbjct: 83  HSKRTVRRRLSAIKSFARFCVKNQLIPENPVEMIRGPRLPQELPSPLTYEQVLALMAAPE 142

Query: 188 E----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPD-- 239
                G + R   E    SGLR S+        +   +++  I+  K      V +    
Sbjct: 143 LDKVTGFRDRCLLELFYSSGLRISEITALNRADIDFQSHLLHIR-GKGKKERIVPMTKVA 201

Query: 240 --GFMKLLAMTPI-----GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVR 290
                  L            +  F+N   ++++       F+    K G++ S   H +R
Sbjct: 202 VQWLQDYLNHPDRASVEQDHQACFLNRFGKRLSTRSIDRKFQQYLLKTGLSGSITPHTIR 261

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
              AT   + G     +    G  +++    YT  + +++  I
Sbjct: 262 HTIATHWLERGMDLKTIQLLLGHTSLETTTIYTHVSMKLKKQI 304


>gi|229494828|ref|ZP_04388582.1| tyrosine recombinase XerD [Rhodococcus erythropolis SK121]
 gi|229318266|gb|EEN84133.1| tyrosine recombinase XerD [Rhodococcus erythropolis SK121]
          Length = 307

 Score =  119 bits (299), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 44/269 (16%), Positives = 87/269 (32%), Gaps = 33/269 (12%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKIT----------TKHIRSGVESRKHTP---SSAI 134
           A N+ +S+    ++            +             H+R G +     P   SSA 
Sbjct: 20  ARNTLLSYRRDLNRYAEYLNGRGIDDVAGVTENDVTEFVTHLRLGDKDAGVVPLAASSAA 79

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-------- 186
           + L ++R   K++  +  V+++   +V+ P    +  +    +D+               
Sbjct: 80  RTLIAVRGFHKFSAAEGLVSVDVARTVKPPTPGRKLPKALPLDDVIALLDASGGGAAGDG 139

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKLL 245
               + R   E L  +G R +++    V  +       +   K G    V +    +  +
Sbjct: 140 PRDLRDRALLELLYSTGARITEAIDLDVDDIDTETRSVLLKGKGGKQRIVPVGRPAIAAV 199

Query: 246 AM---------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSA 294
                         G    F+N    +++        +  A  AG+    S H +R   A
Sbjct: 200 DAYLVRGRPSLATRGVPALFLNARGGRLSRQSAWQILQDAAASAGIKADVSPHTLRHSFA 259

Query: 295 TISADAGATAHELMATYGWKTVDQAETYT 323
           T   D GA    +    G  +V   + YT
Sbjct: 260 THLLDGGADVRVVQELLGHASVTTTQIYT 288


>gi|169830947|ref|YP_001716929.1| phage integrase family protein [Candidatus Desulforudis audaxviator
           MP104C]
 gi|169637791|gb|ACA59297.1| phage integrase family protein [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 286

 Score =  119 bits (299), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 44/255 (17%), Positives = 85/255 (33%), Gaps = 15/255 (5%)

Query: 85  GSLAVNSRISF----ESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLT 138
             LA  +   +      +   +    G+ D   +T+  +        +   P++    L 
Sbjct: 16  RGLAPATAGVYLGHVRRFLAWVEGTHGEADVAAVTSLDVADYRRHLLKDRKPATVNNALD 75

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF-KSFWSEGS-QPRLAF 196
           ++   F WA     V  +P   V R + +    R  T+ ++    ++    GS + +   
Sbjct: 76  ALSSFFAWAKDAGLVQADPTDGVRRAQEERGAPRWLTRREVGALVRAVQKHGSKRDQALV 135

Query: 197 EFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDGFMKLLA---MTP 249
             LL++GLR S++     Q      ++    ++  K      V L     K L       
Sbjct: 136 TLLLHTGLRVSEAVGLKTQDAVIRERSGHVIVRRGKGEKYREVPLNVTARKALQDWLAAH 195

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMA 309
            G    F    +  +        F      AGV  + H +R     +  DAG +   +  
Sbjct: 196 PGGPWLFPGRGEAPLTRWAAEKMFAKLGRLAGVEVTPHKLRHTFCKMLVDAGESLDRVAV 255

Query: 310 TYGWKTVDQAETYTK 324
             G   ++    YT+
Sbjct: 256 LAGHANLNTTARYTR 270


>gi|329956681|ref|ZP_08297254.1| putative tyrosine recombinase XerC [Bacteroides clarus YIT 12056]
 gi|328524053|gb|EGF51129.1| putative tyrosine recombinase XerC [Bacteroides clarus YIT 12056]
          Length = 294

 Score =  119 bits (299), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 41/242 (16%), Positives = 86/242 (35%), Gaps = 19/242 (7%)

Query: 103 IRKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL 159
               G+     +  + +R  +     R +  +S  + L+S+R  +K+ +R+  V  +P  
Sbjct: 37  EELLGNLTPSDVDVELVREWIASLMDRGYAFNSINRKLSSIRTYYKYLLRKGVVESDPLQ 96

Query: 160 SVERPKRKTEGIRPWTKEDMQQFKSFWS-----EGSQPRLAFEFLLYSGLRCSDSCRAGV 214
            + RP++K        + +M +           EG + R+  E    +G+R S+      
Sbjct: 97  KITRPRKKKPLPVFLRESEMNRLLDDIDFGEGFEGCRDRMIVEMFYATGMRLSELVGLDD 156

Query: 215 QHLQNNIFSIKT-QKTGTIITVELPDGFMKLL--------AMTPIGKETFFINNDKQKMN 265
           + +      IK   K      +   +     +           P+  + FFI  +  ++ 
Sbjct: 157 KDVDFLASLIKVVGKRNKQRLIPFDEELRCSMQEYVNERNKSFPVRSDAFFIRKNGGRIT 216

Query: 266 ATQFSIWFKA--KATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
            +  +   K           +S H +R   AT   + GA    +    G +++   E YT
Sbjct: 217 RSIVAYIVKRNLSKVVTVKKRSPHVLRHTFATAMLNNGADLGSIKELLGHESLATTEVYT 276

Query: 324 KG 325
             
Sbjct: 277 HA 278


>gi|84502972|ref|ZP_01001074.1| tyrosine recombinase XerD [Oceanicola batsensis HTCC2597]
 gi|84388717|gb|EAQ01588.1| tyrosine recombinase XerD [Oceanicola batsensis HTCC2597]
          Length = 315

 Score =  119 bits (299), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 42/268 (15%), Positives = 93/268 (34%), Gaps = 31/268 (11%)

Query: 88  AVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRV 142
           + N+ +++             +        +   +   +  +++  + ++  + L+++R 
Sbjct: 24  SRNTLLAYGRDLKDFAGWLERQHHAIDSATRADVEAYLTDCDAQGLSQATRARRLSAIRQ 83

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-------SEGSQPRLA 195
           LF++A  + + + NP + +  P R  +  R  T +++              S+  +    
Sbjct: 84  LFRFAFEEGWRSDNPAIEIRGPGRSRKLPRTLTTDEVGALLDAARTKGRNESDRLRNTCL 143

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254
            E L  +G+R ++     +   + +    +   K G    V L     + LA     +E 
Sbjct: 144 MELLYATGMRVTELVSLPLAAARGDPRMLLIRGKGGKERMVPLSPPAREALAAWLAAREA 203

Query: 255 ---------------FFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATI 296
                          F   + +  +   +F I  K  A  AGV     + H +R   AT 
Sbjct: 204 RDEALPRGARPSRALFPSRSAEGHLTRHRFYILIKEIALAAGVSPAKVTPHTLRHAFATH 263

Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324
             + GA    +    G   +   E YT 
Sbjct: 264 LLENGADLRAIQTLLGHADLATTEIYTH 291


>gi|259500641|ref|ZP_05743543.1| integrase/recombinase XerC [Lactobacillus iners DSM 13335]
 gi|302191330|ref|ZP_07267584.1| integrase/recombinase CodV [Lactobacillus iners AB-1]
 gi|259168025|gb|EEW52520.1| integrase/recombinase XerC [Lactobacillus iners DSM 13335]
          Length = 307

 Score =  119 bits (299), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 36/279 (12%), Positives = 97/279 (34%), Gaps = 26/279 (9%)

Query: 72  KWLISEYRKS-AHWGSLAVNSRISFESYFDQ----IIRKSGDFDYRKITTKHIR---SGV 123
              +  Y     +  + ++N+  ++     +     +   G  D+ K++++ I      +
Sbjct: 5   DDFLKLYYNYLKNERNYSINTCKAYMDDLSEARTFFVENGGFIDWLKLSSRDIEIFIQYL 64

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
             +K   S+  + ++++R  +++  ++  + +NP   +       +       ++M +  
Sbjct: 65  AQKKDKRSTQSRKISTLRSFYRFLNKRNIIPVNPVELISLRGEHKKLPEFLYSDEMVKVL 124

Query: 184 S----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKT-------G 230
                    G +     E    +G+R S+     +  +    N+  +  +         G
Sbjct: 125 KSISTTTPLGLRNMALLELFYATGMRVSEISNLKLDQIDFELNLILVHGKGNKDRYVAFG 184

Query: 231 TIITVELPDGFMKLLAMT---PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS-- 285
                 L +  ++               F+N++  ++ +       K     AGV+ S  
Sbjct: 185 EEAKTALNNYLVEARKKLLLHKTDYGYVFLNSNGNRITSRGLEYIIKNIFLNAGVSASVH 244

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            H +R   AT   + GA    +    G +++   + YT 
Sbjct: 245 PHMLRHTFATQMLNNGADLRTVQELLGHESISTTQIYTH 283


>gi|28198917|ref|NP_779231.1| phage-related integrase [Xylella fastidiosa Temecula1]
 gi|182681625|ref|YP_001829785.1| integrase family protein [Xylella fastidiosa M23]
 gi|28057015|gb|AAO28880.1| phage-related integrase [Xylella fastidiosa Temecula1]
 gi|182631735|gb|ACB92511.1| integrase family protein [Xylella fastidiosa M23]
 gi|307580060|gb|ADN64029.1| integrase family protein [Xylella fastidiosa subsp. fastidiosa
           GB514]
          Length = 339

 Score =  119 bits (299), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 60/332 (18%), Positives = 110/332 (33%), Gaps = 26/332 (7%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
           +P F  + + + G + YY+  G   R   P          Y  A+     + E+      
Sbjct: 11  IPRFRVRPQ-KSGVVYYYYDHGGKPRKETPLG------RDYGLAI-KRWAELEHAQITPA 62

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVE 124
              T + +   YR      + A N++         +++   D    +  I   +IR  ++
Sbjct: 63  IAVTFRHVAERYRAEVT-PTKAYNTQRVEHRCLAPLLKFFDDPPAPFEAIKPVNIRQYLD 121

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVA-INPCLSVERPKRKTEGIRPWTKEDMQQFK 183
            R      A + ++    L+ WA  +      NPC  + R K     +     +D     
Sbjct: 122 WRTSKV-IANREVSVFSHLWNWARSKGITDLPNPCGGIRRNKATGRDVYV---DDTTYRS 177

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
            + +     R A +    +G R SD      +H+ N    I   KTG  + + +      
Sbjct: 178 VYQAADQTLRDAMDLAYLTGQRVSDVVSMDERHIVNGALEICQAKTGAKLAITVTGELAV 237

Query: 244 LLAMTPIGKE-------TFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFS 293
           L+      K           ++ +  +++       F      AGV K       +R  +
Sbjct: 238 LIKRIFDRKRGMKLRSTRLIVDAEGLELSRIGLRYRFDKARAAAGVAKEVFQFRDLRAKA 297

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKG 325
           AT  AD      +  A  G  +V   E Y + 
Sbjct: 298 ATDKADLAGDIRQAQAQLGHASVTMTEHYVRK 329


>gi|152979627|ref|YP_001345256.1| site-specific tyrosine recombinase XerC [Actinobacillus
           succinogenes 130Z]
 gi|171704362|sp|A6VQS4|XERC_ACTSZ RecName: Full=Tyrosine recombinase xerC
 gi|150841350|gb|ABR75321.1| tyrosine recombinase XerC [Actinobacillus succinogenes 130Z]
          Length = 295

 Score =  119 bits (299), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 44/260 (16%), Positives = 94/260 (36%), Gaps = 21/260 (8%)

Query: 85  GSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSGV-ESRKHTPS--SAIQFLT 138
             L+  +  ++      +     ++G   ++++T   +R  + ESRK      S    L+
Sbjct: 16  RRLSPYTLTNYRRQLSAVTELLTQNGIRSWQQVTPSVVRFILAESRKAGLHEKSLALRLS 75

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF---KSFWSEGSQPRLA 195
           ++R    + V QE + +NP   +  PK+     +   +E + +    +S      + R  
Sbjct: 76  ALRQFLAYLVVQEELKVNPATGISAPKQGKYLPKNIDQEQIGKLLDNRSNEPIDIRDRAM 135

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLLA 246
            E +  SGLR S+     + H+      ++    G+   +          + D     L 
Sbjct: 136 LELMYSSGLRLSELHGLDLNHVNLQSREVRVLGKGSKERILPVGHQALDAVLDWLQVRLR 195

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATA 304
             P      F+++   ++         +    K G+  + + H +R   AT   +A A  
Sbjct: 196 FNP-KDNALFVSSQGGRLTPRAIQKRMEIWGVKQGLSTHLNPHKLRHSFATHMLEASADL 254

Query: 305 HELMATYGWKTVDQAETYTK 324
             +    G   +   + YT 
Sbjct: 255 RAVQELLGHSNLATTQIYTH 274


>gi|317132367|ref|YP_004091681.1| integrase family protein [Ethanoligenens harbinense YUAN-3]
 gi|315470346|gb|ADU26950.1| integrase family protein [Ethanoligenens harbinense YUAN-3]
          Length = 334

 Score =  119 bits (299), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 57/303 (18%), Positives = 116/303 (38%), Gaps = 22/303 (7%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY-RKITTKHIRSGVE 124
           K P T++   ++ R    +      S +  ++ FD+I     D  +   IT   I   + 
Sbjct: 25  KSPGTVREYENDLRTFFRFIKQMRGS-VPRDTPFDEIAIDDVDIPFLASITLADIYEYLN 83

Query: 125 ----SRKHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKED- 178
                RK+  +S  + ++S+R  +K+   +   +  NP   +E PK+K    +  T E+ 
Sbjct: 84  YITNERKNRAASRARKVSSLRSFYKYLCERAGILQENPTRDLEAPKQKKSLPKYLTLEES 143

Query: 179 MQQFKSFW-SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237
           M+  +       ++        L  G+R S+     +  ++N+  ++ T K     T+ L
Sbjct: 144 MEVLRDIDGKFAARDYCIMTLFLNCGMRLSELVGLNLSDIRNSTMTV-TGKGNKQRTIYL 202

Query: 238 PDGFMKLLAM--------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSA 286
            +  ++ L          +   ++  F++N  Q+++             +AG+     S 
Sbjct: 203 NEACLQALERYLAVRAKDSVKDRDALFLSNRLQRISPKTVQAIVYKYLERAGLSGRGLSV 262

Query: 287 HGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345
           H +R  +AT+    G      L    G + +   E YT  +DR      N   ++     
Sbjct: 263 HKLRHTAATLLYQHGHVDVRVLQEILGHENLSTTEIYTHLSDRQLQDAVNRSPLAHFSGQ 322

Query: 346 DDP 348
             P
Sbjct: 323 KAP 325


>gi|307251104|ref|ZP_07533028.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           4 str. M62]
 gi|306856934|gb|EFM89066.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           4 str. M62]
          Length = 336

 Score =  119 bits (299), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 36/259 (13%), Positives = 89/259 (34%), Gaps = 19/259 (7%)

Query: 85  GSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLT 138
              + ++  +++     +     ++G   ++++ +  +R  +     +     S    L 
Sbjct: 53  KQASQHTLSNYQRQLLAVSDMLSQAGISTWQEVNSATVRWIIAQSNKQGLGAKSIALRLV 112

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS---FWSEGSQPRLA 195
           ++R  F + +RQE +++NP + ++ PK      +    E  +Q  +         +    
Sbjct: 113 ALRQWFSYLIRQEKMSVNPAVGIKAPKASKRLPKNIDAEQAKQLLTSDSHEPSDLRDLAM 172

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMT------ 248
            E +  SGLR S+     +  +      ++   K      V +    ++ L         
Sbjct: 173 MELMYSSGLRLSELQGLDLGDMDLAGREVRLLGKGNKERIVPIGSKALEALNRWLAVRNQ 232

Query: 249 -PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAH 305
                   F+N    +++     +  +    K G+  +   H +R   AT   +A     
Sbjct: 233 FKPQDNAVFLNKRGGRLSHRSIQLVMQKWGEKQGLESHLHPHKLRHSFATHMLEASGDLR 292

Query: 306 ELMATYGWKTVDQAETYTK 324
            +    G   +   + YT 
Sbjct: 293 AIQELLGHSNLATTQIYTH 311


>gi|126209269|ref|YP_001054494.1| site-specific tyrosine recombinase XerC [Actinobacillus
           pleuropneumoniae L20]
 gi|307248877|ref|ZP_07530889.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           2 str. S1536]
 gi|307253490|ref|ZP_07535361.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           6 str. Femo]
 gi|126098061|gb|ABN74889.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           5b str. L20]
 gi|306854614|gb|EFM86805.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           2 str. S1536]
 gi|306859169|gb|EFM91211.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           6 str. Femo]
          Length = 336

 Score =  119 bits (299), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 36/259 (13%), Positives = 89/259 (34%), Gaps = 19/259 (7%)

Query: 85  GSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLT 138
              + ++  +++     +     ++G   ++++ +  +R  +     +     S    L 
Sbjct: 53  KQASQHTLSNYQRQLLAVSDMLSQAGISTWQEVNSATVRWIIAQSNKQGLGAKSIALRLV 112

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS---FWSEGSQPRLA 195
           ++R  F + +RQE +++NP + ++ PK      +    E + Q  +         +    
Sbjct: 113 ALRQWFSYLIRQEKMSVNPAVGIKAPKASKRLPKNIDAEQIGQLLTSDSHEPSDLRDLAM 172

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMT------ 248
            E +  SGLR S+     +  +      ++   K      V +    ++ L         
Sbjct: 173 MELMYSSGLRLSELQGLDLGDMDLAGREVRLLGKGNKERIVPIGSKALEALNRWLAVRNQ 232

Query: 249 -PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAH 305
                   F+N    +++     +  +    K G+  +   H +R   AT   +A     
Sbjct: 233 FKPQDNAVFLNKRGGRLSHRSIQLVMQKWGEKQGLESHLHPHKLRHSFATHMLEASGDLR 292

Query: 306 ELMATYGWKTVDQAETYTK 324
            +    G   +   + YT 
Sbjct: 293 AVQELLGHSNLATTQIYTH 311


>gi|161869347|ref|YP_001598514.1| integrase/recombinase [Neisseria meningitidis 053442]
 gi|189030079|sp|A9M1G2|XERC_NEIM0 RecName: Full=Tyrosine recombinase xerC
 gi|161594900|gb|ABX72560.1| integrase/recombinase [Neisseria meningitidis 053442]
          Length = 305

 Score =  119 bits (299), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 36/278 (12%), Positives = 84/278 (30%), Gaps = 24/278 (8%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD-------YRKITTKHIRSGV 123
                  Y ++      + ++  ++    +++                + ++ +   + +
Sbjct: 6   FAAHFDAYLENIVREGKSEHTVAAYRRDLEELFALLAQMPSEAEGGVPQGLSRRDFTAAL 65

Query: 124 ES---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                R     +  + L+S R    W V +  +  +P   ++ PK+     +   +E + 
Sbjct: 66  RRLSQRGLNARTLARKLSSWRQYCVWLVERGLLHTDPTADIKPPKQPERVPKALPQEWLN 125

Query: 181 QFKSF-----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIIT 234
           +              +    FE +  SGLR S+        +  +   +     G     
Sbjct: 126 RMLDLPVDGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGKGRKQRQ 185

Query: 235 VELP----DGFMKL--LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK--AGVNKSA 286
           V L     +       L  T    +  F   +  +++  Q        A +   G + S 
Sbjct: 186 VPLTGKSVEALKNYLPLRQTASDGKALFTGRNGTRLSQRQIQKRLAQWAAQNGDGRHVSP 245

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           H +R   A     A      +    G  ++   + YTK
Sbjct: 246 HMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTK 283


>gi|227544897|ref|ZP_03974946.1| tyrosine recombinase [Lactobacillus reuteri CF48-3A]
 gi|300910076|ref|ZP_07127536.1| integrase/recombinase XerD [Lactobacillus reuteri SD2112]
 gi|227185109|gb|EEI65180.1| tyrosine recombinase [Lactobacillus reuteri CF48-3A]
 gi|300892724|gb|EFK86084.1| integrase/recombinase XerD [Lactobacillus reuteri SD2112]
          Length = 297

 Score =  119 bits (299), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 40/263 (15%), Positives = 91/263 (34%), Gaps = 25/263 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP------SSAIQFLT 138
             L+ N+ +S++   +Q +    D              ++            S+  + ++
Sbjct: 16  RQLSDNTLMSYQRDLEQTVTYLEDRGIDDWQQVDHYLLIDLLNSLRQQGKANSTINRVIS 75

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKR--KTEGIRPWTKEDMQQFKSF----WSEGSQP 192
           S+R  +K+ +R   + INP   ++      +       T+++++Q  +        G + 
Sbjct: 76  SLRQFYKYMIRHHNLTINPMEMIDHQYTFNQPPAPVILTEKEIEQLLAVPDVSTPIGLRD 135

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAM---- 247
           R   E +  +G+R S+     +  L  ++  ++ T K      + L    +K L      
Sbjct: 136 RALLEIMDATGMRVSEVIALDLTALHLDVKLLQLTGKNERERMIPLSQPAVKWLTGYLNR 195

Query: 248 -----TPIGKET-FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
                     ET  F+N     +         K   ++A + K  +   +R   A    +
Sbjct: 196 GRPLLLRDDHETRVFLNAHGYPLTRQGIWKKMKEWVSEAKIKKEVTPQTMRYSFAVHLIE 255

Query: 300 AGATAHELMATYGWKTVDQAETY 322
            GA    +    G+  +   + Y
Sbjct: 256 NGADVQLIQEILGYNAMKALQPY 278


>gi|91227527|ref|ZP_01261864.1| tyrosine recombinase [Vibrio alginolyticus 12G01]
 gi|91188551|gb|EAS74843.1| tyrosine recombinase [Vibrio alginolyticus 12G01]
          Length = 310

 Score =  119 bits (299), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 36/278 (12%), Positives = 93/278 (33%), Gaps = 21/278 (7%)

Query: 68  PTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV--- 123
           P +L+  +  + +       L+++++ +++   + + +   +   +  +           
Sbjct: 10  PNSLQKPLERFYEFLRSEKGLSLHTQRNYKQQLETMAQHLAEMGLKDWSQVDAGWVRQLA 69

Query: 124 ---ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                     SS    L+S+R  F + + +  ++ NP   V  P++K    +    +++ 
Sbjct: 70  GKGMREGMKASSLATRLSSLRSFFDFLILRGEMSANPAKGVSAPRKKRPLPKNLDVDEVS 129

Query: 181 QFKSF---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE 236
           Q            + R   E +  +GLR ++     V+ +Q     ++   K      V 
Sbjct: 130 QLLEVNEDDPLAVRDRAMMELMYGAGLRLAELVGVDVRDVQLRSGELRVIGKGDKERKVP 189

Query: 237 --------LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286
                   +         +   G+   F++    +++             K  V  + S 
Sbjct: 190 FSGMATEWVGKWLRVRGDLAAPGEPALFVSKLGTRISHRSVQKRMAEWGQKQSVASHISP 249

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           H +R   AT   ++      +    G + +   + YT 
Sbjct: 250 HKLRHSFATHMLESSNNLRAVQELLGHENISTTQIYTH 287


>gi|238918092|ref|YP_002931606.1| site-specific tyrosine recombinase XerC [Edwardsiella ictaluri
           93-146]
 gi|238867660|gb|ACR67371.1| tyrosine recombinase XerC, putative [Edwardsiella ictaluri 93-146]
          Length = 300

 Score =  119 bits (299), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 41/277 (14%), Positives = 90/277 (32%), Gaps = 20/277 (7%)

Query: 68  PTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGV 123
           P +L   +  + +       L+  +  ++         ++ + G  D+  + T  +RS V
Sbjct: 2   PESLSTPVVAFLQMMRVERQLSPRTVETYRRQLAASVALLLEGGLCDWTALDTVRVRSLV 61

Query: 124 ESRKHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
              +     P+S    L+++R    W V +  +  NP   V  P++     +    +D+ 
Sbjct: 62  ARSRRQGLEPASLALRLSALRSFLDWQVSRGALTANPAKGVSAPRQGRHLPKNLDVDDVN 121

Query: 181 QFKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVE 236
           +        +   + R   E +   GLR S+      +H            K      + 
Sbjct: 122 RLLDIDEGDTLAVRDRAMLEVMYGGGLRLSELVGLDCRHADLTTGEVWVLGKGSKERRLP 181

Query: 237 LPDGFMKLLAM-------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAH 287
           +    ++ L              +  F++    +++       F     K GV  +   H
Sbjct: 182 VGREAVRWLQKWLSLRLSLQPQDDALFVSRLGGRISPRSVQKRFAEWGVKQGVTSHIHPH 241

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            +R   AT   ++      +    G   +   + YT 
Sbjct: 242 KLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTH 278


>gi|51892621|ref|YP_075312.1| recombinase [Symbiobacterium thermophilum IAM 14863]
 gi|51856310|dbj|BAD40468.1| recombinase [Symbiobacterium thermophilum IAM 14863]
          Length = 356

 Score =  119 bits (299), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 39/247 (15%), Positives = 85/247 (34%), Gaps = 26/247 (10%)

Query: 109 FDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168
                +T +   + ++ ++ +  +  + L+ +R  +K+ VR + V  NP   V  PK + 
Sbjct: 89  RAVNHLTIRSYLAFLQRQEFSRRTIARKLSCLRSFYKYLVRADLVPTNPVAGVHTPKLER 148

Query: 169 EGIRPWTKEDM----QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFS 223
                  +E++     Q  +    G + R   E L  +GLR  +        +  +  + 
Sbjct: 149 RLPVFLDEEEIGGLLSQPDTHTPLGLRDRALLELLYATGLRVGELVALNRGDIDYSEGWV 208

Query: 224 IKTQKTGTIITVELPDGFMKLL-------------------AMTPIGKETFFINNDKQKM 264
           I   K      V +    ++ L                      P  K+  F+N    ++
Sbjct: 209 IVWGKGRKERAVPVGSEALQALGHYLRDGWPVLRARAPAAEQSLPEAKQPLFLNKLGGRL 268

Query: 265 NATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           +            ++  +++  S H +R   AT   + GA    +    G  ++   + Y
Sbjct: 269 SDRSVRRLLDRYVSQLALSRQISPHKIRHTFATHMLNHGADLRAVQEMLGHASLSTTQIY 328

Query: 323 TKGADRI 329
           T    + 
Sbjct: 329 THVTTQR 335


>gi|296140077|ref|YP_003647320.1| tyrosine recombinase XerD [Tsukamurella paurometabola DSM 20162]
 gi|296028211|gb|ADG78981.1| tyrosine recombinase XerD [Tsukamurella paurometabola DSM 20162]
          Length = 324

 Score =  119 bits (298), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 43/273 (15%), Positives = 83/273 (30%), Gaps = 34/273 (12%)

Query: 85  GSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSGVESRKHT--------PSSA 133
              A N+  S+    D+      + G  D   +T+  +   + + +           SSA
Sbjct: 32  RGAAANTLSSYRRDLDRYREYLVELGIDDLASVTSTQVSGFLVALREGSDGRPPLAASSA 91

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW------- 186
            + L ++R L ++A  +   A +    V  P       +  + + +              
Sbjct: 92  ARSLIAVRGLHRFAAAEGLTASDVAREVRPPAPAKRLPKALSIDTVIALLEAAGGDGESD 151

Query: 187 -SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKL 244
                + R   E L   G R S+     V  +       +   K G    V +    +  
Sbjct: 152 TPSRLRDRALLELLYSCGARISEVTALDVDDIDVQSRSVVLMGKGGKQRVVPIGRPALAA 211

Query: 245 LAM---------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-----KSAHGVR 290
           +                   F+N    +++           A +AG++      S H +R
Sbjct: 212 IEAYLVRGRPSLVKKSNPALFLNVRGGRLSRQSAWQVLATAAERAGIDTDAVHVSPHTLR 271

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYT 323
              AT   + GA    +    G  +V   + YT
Sbjct: 272 HSFATHLLEGGADVRVVQELLGHASVTTTQVYT 304


>gi|219852288|ref|YP_002466720.1| integrase family protein [Methanosphaerula palustris E1-9c]
 gi|219546547|gb|ACL16997.1| integrase family protein [Methanosphaerula palustris E1-9c]
          Length = 292

 Score =  119 bits (298), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 41/279 (14%), Positives = 102/279 (36%), Gaps = 17/279 (6%)

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI----------IRKSGDFDYRKITTK 117
            ++    I  Y       + +  +  S+                   + G  D R++ T 
Sbjct: 3   KSSFVEWIDRYHSYMQMRNYSEKTIQSYIRVVRLFGAYLIDRGATFDQVGGADDRRLITG 62

Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
           ++ +  +   ++  +  + ++++   +++   Q  VA+NP   ++RPK K + +R     
Sbjct: 63  YLSALSQEHGYSAKTLHRIISTLSSFYRFLYAQGAVAVNPVTGIDRPKIKRQELRYLKHR 122

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII-TVE 236
            + +         + +L    +  +G+R S+ C   ++H+  +  +I+ +  G  I TV 
Sbjct: 123 QVLKLIESMPS-VRDQLVVRMIYATGVRVSELCGISIEHIDFDDLTIRIRGKGDKIRTVF 181

Query: 237 LPDGFMKLLAMTPIGK--ETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSA 294
           + +   +L+ +    +    FF+      ++       F+  A       + H +R   A
Sbjct: 182 IDEETCRLMEIYAGDRIFGPFFVGQQGHPLSPRTVQHLFEVYAP---PGVTPHTIRHSYA 238

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           +           +    G  ++   E Y       R G+
Sbjct: 239 SELYKRSKNLRVVQENLGHSSIKTTEIYLHTDLDERQGV 277


>gi|153004979|ref|YP_001379304.1| tyrosine recombinase XerD [Anaeromyxobacter sp. Fw109-5]
 gi|152028552|gb|ABS26320.1| tyrosine recombinase XerD [Anaeromyxobacter sp. Fw109-5]
          Length = 298

 Score =  119 bits (298), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 42/267 (15%), Positives = 90/267 (33%), Gaps = 24/267 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDF------DYRKITTKHIRSGVESRKHTPSSAIQFLT 138
             LA NS   +     + +               +I  +     +  R  +P S  + L+
Sbjct: 19  KGLAENSVEGYLRDLRRYVEHLDALGIGAWERVGRIEIQAHLGELVRRGLSPRSQARALS 78

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FWSEGSQPRL 194
           ++R L +    ++   ++    ++ P+   +     + +++ +  +      + G + R 
Sbjct: 79  AIRSLHRLLFAEKLTPVDAGDELDAPRPGRKLPELLSHDEIARLLASPDPRSAAGLRDRA 138

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKLLAM------ 247
             E L  +GLR S+    G+  +       +   K      V +     + +        
Sbjct: 139 MLELLYATGLRVSELVSLGLNDVNLETRVLVARGKGNKERIVPVGAPAAEAVKAYLAVGR 198

Query: 248 ----TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301
                    +  F++    ++    F+      A  AG+ +  S H +R   AT   + G
Sbjct: 199 ERLLRGRRSKDLFVSPRGGRLTRQGFAKLLGRHARAAGIRRRISPHKLRHSFATHLLEGG 258

Query: 302 ATAHELMATYGWKTVDQAETYTKGADR 328
           A    + A  G   V   + YT   DR
Sbjct: 259 ADLRAVQAMLGHADVSTTQIYTH-VDR 284


>gi|323495291|ref|ZP_08100372.1| site-specific tyrosine recombinase XerC [Vibrio brasiliensis LMG
           20546]
 gi|323310468|gb|EGA63651.1| site-specific tyrosine recombinase XerC [Vibrio brasiliensis LMG
           20546]
          Length = 308

 Score =  119 bits (298), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 39/279 (13%), Positives = 94/279 (33%), Gaps = 27/279 (9%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK--------ITTKHIRSGVESRKH 128
           EY +S     L+++++ +++   + +         ++        +     +   +  K 
Sbjct: 21  EYLRSE--KGLSLHTQRNYKQQLETMAHHLVHLGLKEWQQVDAGWVRQIASKGMRDGMKA 78

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF--- 185
             SS    L+S+R  F + + +  +A NP   V  P++K    +    +++ Q       
Sbjct: 79  --SSIATRLSSLRSFFDFLILRGEMAANPAKGVSAPRKKRPLPKNLDVDEVGQLLEVNED 136

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE-------- 236
                + R   E +  +GLR ++     V+ +  +   ++   K      V         
Sbjct: 137 DPLAVRDRAMMELMYGAGLRLAELVSVNVKDVSLSSGELRVIGKGDKERKVPFAGMATEW 196

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294
           +        ++    +   F++    +++             K  V  + S H +R   A
Sbjct: 197 VTKWLKVRSSLAKSDETALFVSKLGVRISHRNVQKRMAEWGQKQSVASHISPHKLRHSFA 256

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           T   ++      +    G + +   + YT   D   L  
Sbjct: 257 THMLESSNNLRAVQELLGHENISTTQIYTH-LDFQHLAD 294


>gi|325002510|ref|ZP_08123622.1| site-specific tyrosine recombinase XerD [Pseudonocardia sp. P1]
          Length = 307

 Score =  119 bits (298), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 50/282 (17%), Positives = 86/282 (30%), Gaps = 31/282 (10%)

Query: 74  LISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH--------IRSGVE 124
           ++ +Y          A N+  S+    D+ +    D     +                  
Sbjct: 7   VVEDYLGHLAVERGRAQNTLRSYRLDLDRYVAHLADAGIDDLGRVRETDVAGFVTALRTG 66

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
            R    SSA + L ++R L ++AV +  V  +    V  P   +      T + + Q  +
Sbjct: 67  ERPLAASSAARALAAVRGLHRFAVLEGTVPADVAAGVAPPSLPSRLPTALTVDQVDQLLA 126

Query: 185 FW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPD 239
                   G + R   E L  +G R S+   A +  L       +   K      V +  
Sbjct: 127 GCVADGPTGLRDRALLELLYSTGGRISEIVGADLDDLDPGARTILLHGKGDKQRIVPVGR 186

Query: 240 GFMKL-----------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN----- 283
             +             LA    G     +N    +M+        +A A  +G+      
Sbjct: 187 PALAAVDAYRVRARPDLAGRGTGSPALLLNARGGRMSRQSAWHALRAAAEASGLGPAVVA 246

Query: 284 -KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             S H +R   AT     GA    +    G  +V   + YT 
Sbjct: 247 AVSPHTLRHCFATHLLSGGADVRVVQELLGHASVATTQIYTH 288


>gi|167751366|ref|ZP_02423493.1| hypothetical protein EUBSIR_02352 [Eubacterium siraeum DSM 15702]
 gi|167655612|gb|EDR99741.1| hypothetical protein EUBSIR_02352 [Eubacterium siraeum DSM 15702]
          Length = 476

 Score =  119 bits (298), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 53/316 (16%), Positives = 108/316 (34%), Gaps = 39/316 (12%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFE-SYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
               I  + ++    +L + +R  +E   ++ II + G     +++   ++      K  
Sbjct: 74  FGDWIDFWYQTYCRHTLRITTRTDYENRIYNHIIPEIGKIPLNRMSQSDLQQFYAKEKTD 133

Query: 130 PSS----------AIQFLTSM----RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
                        + + +  +    R   + AV+   +  NP +  + P +K   ++  T
Sbjct: 134 GRKLHAKTYGKGLSDRTIRGIHANCRTALQRAVQDGLIRTNPAVCCKLPPKKAREMQVLT 193

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ------ 227
           + ++ +F     E     L F   L +G+R  +        L        I+ Q      
Sbjct: 194 QNEILRFLHQAKEEGYYEL-FLLELGTGMRRGEILALKWSDLNFATGELRIERQVYIIKA 252

Query: 228 -------KTGTII-TVELPDGFMKLLAMTPIGKETFFI----NNDKQKMNATQFSIWFKA 275
                  KT   I TV LP   +K L       ++ ++     ++ +  N +      + 
Sbjct: 253 EVIISAPKTKASIRTVILPPSLLKTLVAYKETVDSEWMFPSPTDNGRPRNPSSVRKRLQL 312

Query: 276 KATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGAD-RIRLG 332
              +AG  K   H +R   AT++ + G     L A  G  + +     Y+   D   R  
Sbjct: 313 ILERAGCKKVRFHDLRHTFATMALENGMDIKTLSAMIGHVSAETTLNIYSHITDTMQRQA 372

Query: 333 IKNSRRISSVVDSDDP 348
             +  R     D+  P
Sbjct: 373 AVHIDRKIGGTDARMP 388


>gi|153835738|ref|ZP_01988405.1| tyrosine recombinase XerC [Vibrio harveyi HY01]
 gi|148867607|gb|EDL66909.1| tyrosine recombinase XerC [Vibrio harveyi HY01]
          Length = 313

 Score =  119 bits (298), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 36/278 (12%), Positives = 92/278 (33%), Gaps = 21/278 (7%)

Query: 68  PTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV--- 123
           P +L+  +  + +       L+++++ +++   + +     +   +  +           
Sbjct: 10  PNSLQKPLERFYEFLRSEKGLSLHTQRNYKQQLETMAHHLAEMGLKDWSQVDAGWVRQLA 69

Query: 124 ---ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                     SS    L+S+R  F + + +  ++ NP   V  P++K    +    +++ 
Sbjct: 70  GKGMREGMKASSLATRLSSLRSFFDFLILRGEMSANPAKGVSAPRKKRPLPKNLDVDEVN 129

Query: 181 QFKSF---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE 236
           Q            + R   E +  +GLR ++     V+ +Q     ++   K      V 
Sbjct: 130 QLLEVNEDDPLAVRDRAMMELMYGAGLRLAELVSVDVRDVQLRSGELRVIGKGDKERKVP 189

Query: 237 --------LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286
                   +         +   G+   F++    +++             K  V  + S 
Sbjct: 190 FSGMATEWVGKWLRVRGDLAAPGEPALFVSKLGTRISHRSVQKRMAEWGQKQSVASHISP 249

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           H +R   AT   ++      +    G + +   + YT 
Sbjct: 250 HKLRHSFATHMLESSNNLRAVQELLGHENISTTQIYTH 287


>gi|312875471|ref|ZP_07735474.1| putative tyrosine recombinase XerC [Lactobacillus iners LEAF
           2053A-b]
 gi|325912823|ref|ZP_08175201.1| putative tyrosine recombinase XerC [Lactobacillus iners UPII 60-B]
 gi|311088982|gb|EFQ47423.1| putative tyrosine recombinase XerC [Lactobacillus iners LEAF
           2053A-b]
 gi|325477816|gb|EGC80950.1| putative tyrosine recombinase XerC [Lactobacillus iners UPII 60-B]
          Length = 307

 Score =  119 bits (298), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 36/279 (12%), Positives = 95/279 (34%), Gaps = 26/279 (9%)

Query: 72  KWLISEYRKS-AHWGSLAVNSRISFESYFDQ----IIRKSGDFDYRKITTKHIR---SGV 123
              +  Y     +  + ++N+  ++     +     +   G  D+ K++++ I      +
Sbjct: 5   DDFLKLYYNYLKNERNYSINTCKAYMDDLSEARTFFVENGGFIDWIKLSSRDIEIFIQYL 64

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
             +K   S+  + ++++R  +++  ++  + +NP   +       +       ++M +  
Sbjct: 65  AQKKDKRSTQSRKISTLRSFYRFLNKRNIIPVNPVELISLRGDHKKLPEFLYNDEMVKVL 124

Query: 184 S----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELP 238
                    G +     E    +G+R S+     ++ +   +   +   K      V   
Sbjct: 125 KSISTTTPLGLRNMALLELFYATGMRVSEIANLKLEQIDFELNLILVHGKGNKDRYVAFG 184

Query: 239 DGFMKLLAMT-----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS-- 285
           +     L                     F+N++  ++ +       K     AGV+ S  
Sbjct: 185 EEAKTALNNYLVEARKKILLHKTDYGYVFLNSNGNRITSRGLEYIIKNIFLNAGVSASVH 244

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            H +R   AT   + GA    +    G +++   + YT 
Sbjct: 245 PHMLRHTFATQMLNNGADLRTVQELLGHESISTTQIYTH 283


>gi|242373543|ref|ZP_04819117.1| tyrosine recombinase XerC [Staphylococcus epidermidis M23864:W1]
 gi|242348906|gb|EES40508.1| tyrosine recombinase XerC [Staphylococcus epidermidis M23864:W1]
          Length = 286

 Score =  119 bits (298), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 38/265 (14%), Positives = 97/265 (36%), Gaps = 20/265 (7%)

Query: 85  GSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVE---SRKHTPSSAIQFLTS 139
            + +  +  S+     Q      S   +      K  R+ +    S     ++  + +++
Sbjct: 6   RNFSEYTLKSYHDDLVQFNEFLNSEHLELTTFEYKDARNYLSYLYSNNLKRTTVSRKIST 65

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KSFWSEGSQPRLA 195
           +R  +++ + Q+   +NP + +  PK++    + + +E+M+      +   ++G + R+ 
Sbjct: 66  LRTFYEYWMTQDESVVNPFVQLVHPKKEQYLPQFFYEEEMEALFRTVEQDRTKGMRDRVI 125

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE--------LPDGFMKLLA 246
            E L  +G+R S+     ++ +  N+  +K   K      +         +     +   
Sbjct: 126 IELLYATGIRVSELVNIKIKDIDMNLPGVKVLGKGNKERFIPFGEFCKQSIERYLDEFQP 185

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATK-AGV-NKSAHGVRKFSATISADAGATA 304
              +  E   +N   + +              + AGV +   H +R   AT   + GA  
Sbjct: 186 RKAVDHEYLIVNMKGEPITERGVRYVLNDVVKRTAGVTDIHPHKLRHTFATHLLNQGADL 245

Query: 305 HELMATYGWKTVDQAETYTKGADRI 329
             + +  G   +     YT  +++ 
Sbjct: 246 RTVQSLLGHVNLSTTGRYTHVSNQQ 270


>gi|94266109|ref|ZP_01289825.1| Phage integrase [delta proteobacterium MLMS-1]
 gi|93453327|gb|EAT03764.1| Phage integrase [delta proteobacterium MLMS-1]
          Length = 379

 Score =  119 bits (298), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 62/349 (17%), Positives = 127/349 (36%), Gaps = 28/349 (8%)

Query: 10  FVTKERTRHGKIIY-YFRKGHG--RRIRLPYPHESTFIPAYMSA--LTGSTPKREYINSP 64
           F+ + R+  GK  +  +R GHG  R+ ++    + +F  A  +A  L       E   + 
Sbjct: 33  FILEVRSTGGKTYHLRYRDGHGKLRQHKIGGADDISFDKAQAAATRLRSRVVLGEDPLAE 92

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF----DQIIRKSGDFDYRKITTKHIR 120
           R+    +  L         +       + S++S F    + ++   G+    +I    + 
Sbjct: 93  RQVKKQVPTLEE--FAHGKYLPYVKGYKRSWKSDFGYLKNHLLPLFGNQHLDQIKQAEVI 150

Query: 121 SGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEY--VAINPCLSVERPKRKTEGIRPWT 175
                 K      ++  + +  +R +F  A + +      NP   V   +      R  T
Sbjct: 151 ELHHGMKARGYALATCNRQVILLRYIFNLARKWKIPGADNNPTTGVVLFETNNGRERYLT 210

Query: 176 KEDMQQFKSFW--SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGT 231
           +++  + K+    SE +Q +     LL  G R S+   +  +       S +    K+G 
Sbjct: 211 EDEAARLKAALESSENTQLKYIVSLLLLLGCRKSELLNSRWEDFDLARRSWRIPLSKSGK 270

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK---ATKAGV-NKSAH 287
              V L    +++LA  P        N          F   F++      KAG+ +   H
Sbjct: 271 ARYVPLSTAALEVLASIPRLSPYVVPN----PKTLQPFVSVFRSWDTARKKAGLPDVRMH 326

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
            +R   A+   ++G + +E+    G   +   + Y+  ++   L   +S
Sbjct: 327 DLRHSFASFLVNSGRSIYEVSQLLGHSQLKTTQRYSHLSNDTLLAAVDS 375


>gi|59800504|ref|YP_207216.1| putative site-specific recombinase [Neisseria gonorrhoeae FA 1090]
 gi|194097632|ref|YP_002000668.1| putative site-specific recombinase [Neisseria gonorrhoeae
           NCCP11945]
 gi|239998167|ref|ZP_04718091.1| putative site-specific recombinase [Neisseria gonorrhoeae 35/02]
 gi|240013349|ref|ZP_04720262.1| putative site-specific recombinase [Neisseria gonorrhoeae DGI18]
 gi|240015794|ref|ZP_04722334.1| putative site-specific recombinase [Neisseria gonorrhoeae FA6140]
 gi|240079931|ref|ZP_04724474.1| putative site-specific recombinase [Neisseria gonorrhoeae FA19]
 gi|240112137|ref|ZP_04726627.1| putative site-specific recombinase [Neisseria gonorrhoeae MS11]
 gi|240114883|ref|ZP_04728945.1| putative site-specific recombinase [Neisseria gonorrhoeae PID18]
 gi|240117087|ref|ZP_04731149.1| putative site-specific recombinase [Neisseria gonorrhoeae PID1]
 gi|240120422|ref|ZP_04733384.1| putative site-specific recombinase [Neisseria gonorrhoeae PID24-1]
 gi|240122724|ref|ZP_04735680.1| putative site-specific recombinase [Neisseria gonorrhoeae PID332]
 gi|240124914|ref|ZP_04737800.1| putative site-specific recombinase [Neisseria gonorrhoeae
           SK-92-679]
 gi|254492944|ref|ZP_05106115.1| tyrosine recombinase xerC [Neisseria gonorrhoeae 1291]
 gi|260441302|ref|ZP_05795118.1| putative site-specific recombinase [Neisseria gonorrhoeae DGI2]
 gi|268594018|ref|ZP_06128185.1| tyrosine recombinase xerC [Neisseria gonorrhoeae 35/02]
 gi|268596071|ref|ZP_06130238.1| tyrosine recombinase xerC [Neisseria gonorrhoeae FA19]
 gi|268598196|ref|ZP_06132363.1| tyrosine recombinase xerC [Neisseria gonorrhoeae MS11]
 gi|268600541|ref|ZP_06134708.1| tyrosine recombinase xerC [Neisseria gonorrhoeae PID18]
 gi|268602774|ref|ZP_06136941.1| tyrosine recombinase xerC [Neisseria gonorrhoeae PID1]
 gi|268681323|ref|ZP_06148185.1| tyrosine recombinase xerC [Neisseria gonorrhoeae PID332]
 gi|268683494|ref|ZP_06150356.1| tyrosine recombinase xerC [Neisseria gonorrhoeae SK-92-679]
 gi|291044658|ref|ZP_06570367.1| tyrosine recombinase xerC [Neisseria gonorrhoeae DGI2]
 gi|293397766|ref|ZP_06641972.1| tyrosine recombinase XerC [Neisseria gonorrhoeae F62]
 gi|75356483|sp|Q5FAI3|XERC_NEIG1 RecName: Full=Tyrosine recombinase xerC
 gi|254799349|sp|B4RNW5|XERC_NEIG2 RecName: Full=Tyrosine recombinase xerC
 gi|59717399|gb|AAW88804.1| putative site-specific recombinase [Neisseria gonorrhoeae FA 1090]
 gi|193932922|gb|ACF28746.1| putative site-specific recombinase [Neisseria gonorrhoeae
           NCCP11945]
 gi|226511984|gb|EEH61329.1| tyrosine recombinase xerC [Neisseria gonorrhoeae 1291]
 gi|268547407|gb|EEZ42825.1| tyrosine recombinase xerC [Neisseria gonorrhoeae 35/02]
 gi|268549859|gb|EEZ44878.1| tyrosine recombinase xerC [Neisseria gonorrhoeae FA19]
 gi|268582327|gb|EEZ47003.1| tyrosine recombinase xerC [Neisseria gonorrhoeae MS11]
 gi|268584672|gb|EEZ49348.1| tyrosine recombinase xerC [Neisseria gonorrhoeae PID18]
 gi|268586905|gb|EEZ51581.1| tyrosine recombinase xerC [Neisseria gonorrhoeae PID1]
 gi|268621607|gb|EEZ54007.1| tyrosine recombinase xerC [Neisseria gonorrhoeae PID332]
 gi|268623778|gb|EEZ56178.1| tyrosine recombinase xerC [Neisseria gonorrhoeae SK-92-679]
 gi|291011552|gb|EFE03548.1| tyrosine recombinase xerC [Neisseria gonorrhoeae DGI2]
 gi|291611712|gb|EFF40781.1| tyrosine recombinase XerC [Neisseria gonorrhoeae F62]
 gi|317163457|gb|ADV06998.1| putative site-specific recombinase [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 305

 Score =  119 bits (298), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 34/278 (12%), Positives = 86/278 (30%), Gaps = 24/278 (8%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD-------YRKITTKHIRSGV 123
                  Y ++      + ++  ++    +++                + ++ +   + +
Sbjct: 6   FAAYFDAYLENIVREGKSEHTVAAYRRDLEELFALLAQMPSEDAGGVPQDLSRRDFTAAL 65

Query: 124 ESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                      +  + L++ R    W V++  +  +P   ++ PK+     +   +E + 
Sbjct: 66  RRLSQRGLDGRTLARKLSAWRQYCAWLVKRGLMRADPTADIKPPKQPERVPKALPQEWLN 125

Query: 181 QFKSF-----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIIT 234
           +              +    FE +  SGLR S+        +  +   +     G     
Sbjct: 126 RMLDLPVDGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGKGRKQRQ 185

Query: 235 VELP----DGFMKL--LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK--AGVNKSA 286
           V L     +       L  T    +  F   +  +++  Q     ++ A +   G + S 
Sbjct: 186 VPLTGKSVEALKNYLPLRQTASDGKALFTGRNGTRLSQRQIQKRLESWAAQYGDGRHVSP 245

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           H +R   A     A      +    G  ++   + YTK
Sbjct: 246 HMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTK 283


>gi|163783966|ref|ZP_02178933.1| recombinase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880762|gb|EDP74299.1| recombinase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 291

 Score =  119 bits (298), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 51/285 (17%), Positives = 105/285 (36%), Gaps = 31/285 (10%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE---SRKHTPSSAIQFLTSMR 141
              + N+  ++     Q  + +GD D   IT   I        S++   S+  + L  + 
Sbjct: 15  ADKSPNTVKNYNVDLKQFAQIAGDKDVESITKADIAKFRMVLQSKRLKSSTIARKLACLN 74

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201
             F++ +  E ++ +P     RPK   +     T E++++           +L  + LL 
Sbjct: 75  SFFQYLIDLELISSSPITKSHRPKVSNKIPSSLTHEEIKRVIENAD-NIMDKLIIKILLT 133

Query: 202 SGLRCSDSCRAGVQHL------------------QNNIFSIKT-QKTGTIITVELPDG-F 241
           +GLR ++      +++                  + +I  IK   K      V L +   
Sbjct: 134 TGLRSAEILDIRRENIIIERNGQLFNIDYIENLQEGDIAYIKVLGKGNKERIVPLSENVL 193

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAG 301
            +L       K +         ++             KAGV    H +R  +AT++  +G
Sbjct: 194 EELFNYLKKYKVSPIF-----PISYHSLWRRIINIGKKAGVILHPHKLRHTAATLALQSG 248

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346
           A    +    G  +      Y K  ++ +L I+ ++++S+ + SD
Sbjct: 249 AELRVIQELLGHASPLTTARYAK-VNQKQL-IEATKKLSNSIFSD 291


>gi|149191484|ref|ZP_01869733.1| site-specific tyrosine recombinase XerC [Vibrio shilonii AK1]
 gi|148834672|gb|EDL51660.1| site-specific tyrosine recombinase XerC [Vibrio shilonii AK1]
          Length = 313

 Score =  119 bits (298), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 39/268 (14%), Positives = 89/268 (33%), Gaps = 22/268 (8%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV------ESRKHTP 130
           EY +S     L+++++ ++    + +     +      T                     
Sbjct: 19  EYLRSE--KGLSLHTQRNYRQQLETMGMHLHEMGIGAWTQVDAGWVRQLAGKGMREGMKA 76

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---S 187
           SS    L+S+R  F + + +  +  NP   V  P+++    +    +++ Q         
Sbjct: 77  SSIATRLSSLRSFFDFLILRGELTANPAKGVSAPRKQRPLPKNLDVDEVNQLLEVDEDDP 136

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVEL----PDGFM 242
              + R   E +  +GLR ++     V+HL  +   ++   K      V       +   
Sbjct: 137 LAVRDRAMMEMMYGAGLRLAEMVSIDVKHLNLSSGELRVIGKGNKERKVPFSGYATEWAK 196

Query: 243 KLLAM----TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATI 296
           K L +       G+   F++    +++             K  +  + S H +R   AT 
Sbjct: 197 KWLKVRGELAKPGEVALFVSKLGTRISHRSVQKRMAEWGQKQSLASHVSPHKLRHSFATH 256

Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324
             ++      +    G + +   + YT 
Sbjct: 257 MLESSNNLRAVQELLGHENISTTQIYTH 284


>gi|309379484|emb|CBX21850.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 334

 Score =  119 bits (298), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 37/281 (13%), Positives = 84/281 (29%), Gaps = 24/281 (8%)

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD-------YRKITTKHIR 120
           P         Y ++      + ++  ++    +++                + ++ +   
Sbjct: 32  PDGFAAHFDAYLENIVREGKSEHTVAAYRRDLEELFALLAQMPSEAEGGVPQDLSRRDFT 91

Query: 121 SGVES---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
           + +     R     +  + L+S R    W V++  +  +P   +  PK+     +   +E
Sbjct: 92  AALRRLSQRGLNARTLARKLSSWRQYCAWLVKRGLMRTDPTAGISPPKQPQRIPKALPQE 151

Query: 178 DMQQFKSF-----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-T 231
            + +              +    FE +  SGLR S+        +  +   +     G  
Sbjct: 152 WLNRMLDLPVDGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGKGRK 211

Query: 232 IITVELPDGFMKL------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK--AGVN 283
              V L     +       L  T    +  F   +  +++  Q        A     G +
Sbjct: 212 QRQVPLTGKSAEALKNYLPLRQTASDGKALFTGRNGTRLSQRQIQKRLAQWAAINGDGRH 271

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            S H +R   A     A      +    G  ++   + YTK
Sbjct: 272 VSPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTK 312


>gi|224543273|ref|ZP_03683812.1| hypothetical protein CATMIT_02473 [Catenibacterium mitsuokai DSM
           15897]
 gi|224523806|gb|EEF92911.1| hypothetical protein CATMIT_02473 [Catenibacterium mitsuokai DSM
           15897]
          Length = 297

 Score =  119 bits (298), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 40/269 (14%), Positives = 88/269 (32%), Gaps = 23/269 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFLTSMR 141
             L+ N+   +            D+D +K    HI +     K      +S  + + S+R
Sbjct: 17  RGLSENTVQGYIRDIKAFYEYI-DYDIKKFDLSHIDAYFCELKDDGYKVTSIRRKIVSLR 75

Query: 142 VLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKSFWSEGSQPRLAF 196
              ++  R +     +     + PK   +  +  + E++    +        G + +   
Sbjct: 76  QYNEFLSRTRGM--QDIMTQYDLPKTDKKLPKVLSLEEIIKVIKSIDDSNPAGKRNKAMM 133

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFMKLLAMTPIGKETF 255
             L+ +G+R S+     +  + +++ ++     G     + L +     +        +F
Sbjct: 134 LLLINTGMRISELVHLEINDINHSVSNVSVVGKGNKERLIPLDEETCSYVYSYMQNDRSF 193

Query: 256 FIN---------NDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATA 304
           F           ND ++M    F    +     AGV  + + H +R   AT   +     
Sbjct: 194 FNKKNNQWLFMMNDGRRMTRENFYNILQKLVIGAGVRDHFTPHMLRHTFATTLLENHCDL 253

Query: 305 HELMATYGWKTVDQAETYTKGADRIRLGI 333
             +    G + +     YT    R  L  
Sbjct: 254 RSIQVMLGHQDISTTTIYTHVTHRQILDD 282


>gi|325576773|ref|ZP_08147388.1| site-specific tyrosine recombinase XerC [Haemophilus parainfluenzae
           ATCC 33392]
 gi|325160979|gb|EGC73097.1| site-specific tyrosine recombinase XerC [Haemophilus parainfluenzae
           ATCC 33392]
          Length = 295

 Score =  119 bits (298), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 46/271 (16%), Positives = 100/271 (36%), Gaps = 20/271 (7%)

Query: 74  LISEYRKSAH-WGSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSGV-ESRKH 128
           L+++Y         L+ ++  +++   + I+    + G   ++++    +R  + ESRKH
Sbjct: 4   LLNQYWDYLRIERQLSPHTLTNYQHQLNAILAILAEKGIQHWQQVNPSVVRLILAESRKH 63

Query: 129 --TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS-- 184
                S    L+++R  F + V Q  + +NP   +  PK+     +    E +Q+  S  
Sbjct: 64  GLKEKSLALRLSALRQFFSYLVHQGQMKVNPATGISAPKQSKHLPKNIDAEQVQKLLSND 123

Query: 185 -FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPD--- 239
                  + R   E +  SGLR S+     +  +   +  ++   K      V       
Sbjct: 124 SKDPIDLRDRAMMELMYSSGLRLSELQGLNLNSINTRVREVRVIGKGNKERIVPFGRYAS 183

Query: 240 -GFMKLLAMTP---IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFS 293
               + L + P      +  F++    ++         +    + G+N   + H +R   
Sbjct: 184 HAIQQWLKVRPLFNPKDDAIFVSQQGNRLTHRSIQKRMENWGIRQGLNSHLNPHKLRHSF 243

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324
           AT   +A +    +    G   +   + YT 
Sbjct: 244 ATHMLEASSDLRAVQELLGHSNLSTTQIYTH 274


>gi|253577473|ref|ZP_04854788.1| integrase [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251843173|gb|EES71206.1| integrase [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 326

 Score =  119 bits (298), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 39/280 (13%), Positives = 82/280 (29%), Gaps = 22/280 (7%)

Query: 71  LKW--LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK------ITTKHIRSG 122
            KW  L+S + +     +L   +   + +   ++ +  G  + +       + +  I   
Sbjct: 17  FKWSELVSLFLQDCRSRNLTNETIRRYRNGLKKLQQHLGSQNLKLNDLTDLLLSHRIIPS 76

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           +        +    L  ++  FK+         N    +   K KT     +T   +Q+ 
Sbjct: 77  MLDEGLALRTINCNLCILKEFFKFLYEDGIAEANIAAELRPLKVKTSLTHTFTDGHLQRL 136

Query: 183 KSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVE 236
                     G +  +    LL +G+R  +     V ++        I   K      V 
Sbjct: 137 FVQPDRSTFTGYRNYVIMLVLLETGIRLKELANLRVTNVFLDEGTLRIIQGKGRKARMVP 196

Query: 237 LPD----GFMKLL-AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA---GVNKSAHG 288
           +         + +     +  +  ++  D          +        A   GV  S H 
Sbjct: 197 IQHVAAFELKQYMFERGTLETDRLWVTLDNHPFYEAGIRVMISRYCIAANIQGVQCSCHT 256

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
            R   A      G     L +  G + ++  E Y +   R
Sbjct: 257 FRHTFAKKYLMNGGDVFTLKSILGHERIETTEMYVELFSR 296


>gi|124006143|ref|ZP_01690979.1| integrase, site-specific recombinase [Microscilla marina ATCC
           23134]
 gi|123988320|gb|EAY27973.1| integrase, site-specific recombinase [Microscilla marina ATCC
           23134]
          Length = 296

 Score =  119 bits (298), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 47/286 (16%), Positives = 95/286 (33%), Gaps = 29/286 (10%)

Query: 74  LISEYRKSAHWGSLAVNSRISFES-------YFDQIIRKSGDFDYRKITTKHIRSGVESR 126
           +I  + K       + N+  S+         Y  +I R            +     +   
Sbjct: 1   MIKSFLKHILAKRYSQNTITSYNHDLQQFSTYLQEIHRLEEPEHADHNMIRSWVLQLTEE 60

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
           K   +S  + + +++  +K+   Q ++  NP   ++  K   +      +E M Q  +  
Sbjct: 61  KANVTSINRKIATLKSFYKYLQNQGFIKKNPAQRLKPMKVPKKAPIFVEEEKMLQLLNTV 120

Query: 187 S-----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-----TQKTGTIITVE 236
                 EG + +   E L  +G+R S+     +QH+      I+       K      + 
Sbjct: 121 QYPAGIEGLRDKFTIEILYGTGMRLSELINLQIQHVDFQKLRIRIPEKNNLKKEKERNIS 180

Query: 237 LPDGFMKLLAMTPIGKE---------TFFINNDKQKMNATQFSIWFKAKATK--AGVNKS 285
           +    + LL      K+            + ++ +           K           KS
Sbjct: 181 VAKPLLDLLQQYEKSKQQTYGKLVHNHVLVTDEGKPAYPMLIYRTVKKYLQLITDQEKKS 240

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIR 330
            H +R   AT   + GA  HE+    G  T+   + Y+  + D+I+
Sbjct: 241 PHVLRHSFATHLLNKGADLHEVKDMLGHTTLSTTQAYSHNSLDQIK 286


>gi|313633457|gb|EFS00282.1| tyrosine recombinase XerC [Listeria seeligeri FSL N1-067]
          Length = 300

 Score =  119 bits (298), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 40/281 (14%), Positives = 100/281 (35%), Gaps = 27/281 (9%)

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK------ITTKHIRSG 122
              + L  +Y  S    + + N+  ++E+      R   +    +      +  +   + 
Sbjct: 5   GKWEQLFLDYLHSER--NYSENTSTAYENDLIDFRRFLNEQAITEYSQVTFLDVRIYLTE 62

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ- 181
           ++ +  + ++  + ++S+R  + + +R+  +  NP   V   K +    + +  E+M+  
Sbjct: 63  LKQKSFSRTTVARKISSLRSFYTFLLRENVITENPFTYVSHAKNQLRLPKFFYSEEMEAL 122

Query: 182 ----FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVE 236
               ++   +   + R+  E L  +G+R S+     +  +     SI    K      V 
Sbjct: 123 FQVVYEDNETLTLRDRVLLEVLYGTGIRVSECAGILLTDIDKTYQSILIRGKGNKERYVP 182

Query: 237 L-----------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS 285
                        D  ++L+       ++  IN+  + +             +KA + + 
Sbjct: 183 FGAYAEDAITDYLDSRIELMKHFNKTHDSLLINHYGEPLTTRGIRYCLTKIISKASLTRK 242

Query: 286 --AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              H +R   AT   + GA    +    G  ++   + YT 
Sbjct: 243 IHPHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTH 283


>gi|157368433|ref|YP_001476422.1| site-specific tyrosine recombinase XerC [Serratia proteamaculans
           568]
 gi|157320197|gb|ABV39294.1| tyrosine recombinase XerC [Serratia proteamaculans 568]
          Length = 303

 Score =  119 bits (298), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 42/277 (15%), Positives = 97/277 (35%), Gaps = 20/277 (7%)

Query: 68  PTTLKWLISEYRKSAH-WGSLAVNSRISFES---YFDQIIRKSGDFDYRKITTKHIR--S 121
             +L+  +  + +       L+  +++S+         + ++ G  ++  +    +R  +
Sbjct: 5   AASLQQPVDAFLRYLKVERQLSPLTQLSYSRQLQALMALAQEIGVTEWPLLDAAKVRQLA 64

Query: 122 GVESRKHTPSSAIQF-LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
               R    SS++   L+++R    W V Q  +  NP   +  P+      +    ++M 
Sbjct: 65  ARSKRAGLQSSSLALRLSALRSFLDWQVSQGMLIANPAKGIRTPRSGRHLPKNIDVDEMN 124

Query: 181 QFKSFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT------ 231
           Q  +         + R   E +  +GLR S+      +H+      I     G+      
Sbjct: 125 QLLNIDLNDPLAVRDRAMLEVMYGAGLRLSELVGLDCRHVDLAAGEIWVLGKGSKERKLP 184

Query: 232 --IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAH 287
                V   + ++ +  +     +  F++N  ++++       F     K GVN     H
Sbjct: 185 VGRTAVTWLEHWLAMRDLFGPSDDAMFLSNQGKRISTRNVQKRFAEWGVKQGVNSHIHPH 244

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            +R   AT   ++      +    G   +   + YT 
Sbjct: 245 KLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTH 281


>gi|332171924|gb|AEE21178.1| tyrosine recombinase XerC [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 298

 Score =  119 bits (298), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 41/272 (15%), Positives = 101/272 (37%), Gaps = 17/272 (6%)

Query: 70  TLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE---S 125
           +L+ L+ +Y     +  +LA  S  +++  F  I +      +  ++ +H+R  +     
Sbjct: 6   SLQPLLDKYFDYLKYERNLAAKSIENYQRQFASICQTLSISSWSALSVEHVRQVLNHARR 65

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ---F 182
           +  +P S    L+++R    + V  E ++ NP  +V+ PK+     +    ++M Q   F
Sbjct: 66  QGLSPRSIALRLSALRGYCAYLVELEVLSSNPAKAVQAPKQGKPLPKQLNVDEMHQLLDF 125

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD--- 239
                   + +   E     GLR ++     +  LQ++       K      + +     
Sbjct: 126 DDDSLLAIRDKAMLELTYSCGLRLAELADLNLNSLQDDGQLRVMGKGSKERLLPVGKKAL 185

Query: 240 -----GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKF 292
                       +    +   F++  +++++  Q +   +  A +  +++    H +R  
Sbjct: 186 TCVGQWLKVRGELADGNEPALFLSKHRRRISHRQIAKRMQLWAKQQHLDQDINPHKLRHS 245

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324
            AT   ++      +    G   +   + YT 
Sbjct: 246 FATHILESSGDLRGVQELLGHANLSTTQVYTH 277


>gi|270294768|ref|ZP_06200969.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270274015|gb|EFA19876.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 294

 Score =  119 bits (298), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 41/263 (15%), Positives = 96/263 (36%), Gaps = 23/263 (8%)

Query: 85  GSLAVNSRISFESYFDQI----IRKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFL 137
            + +  +   + +   ++        GD     +  + +R  + S        ++  + L
Sbjct: 15  RNYSKGTVEYYRADILELQRFGEEMLGDLTPSDVDAELVREWIASLMDKGLASNTINRKL 74

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-----EGSQP 192
           +S+R  +K+ +R+  VA++P   V  PK+K        + +M +           EG + 
Sbjct: 75  SSVRTYYKFLLRRGKVAVDPLRKVTGPKKKKPLPVFLREGEMNRLLDDMDFGEGFEGCRD 134

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLA----- 246
            +  E    +G+R S+      + +  +   +K T K      +   +   + +      
Sbjct: 135 HMIIEMFYATGMRLSELIGLDDKDVDFSASLVKVTGKRNKQRLIPFDEELGRSMREYVNV 194

Query: 247 ---MTPIGKETFFINNDKQKMNATQFSIWFKA--KATKAGVNKSAHGVRKFSATISADAG 301
                P+  + FF+  + +++  +  +   K           +S H +R   AT   + G
Sbjct: 195 RNEAVPVRSDAFFVRKNGKRLYRSIVACLVKRNLSKVVTVKKRSPHVLRHTFATAMLNNG 254

Query: 302 ATAHELMATYGWKTVDQAETYTK 324
           A    +    G +++   E YT 
Sbjct: 255 ADLGSIKELLGHESLATTEVYTH 277


>gi|227889898|ref|ZP_04007703.1| site-specific recombinase XerD [Lactobacillus johnsonii ATCC 33200]
 gi|268319571|ref|YP_003293227.1| tyrosine recombinase XerC [Lactobacillus johnsonii FI9785]
 gi|227849342|gb|EEJ59428.1| site-specific recombinase XerD [Lactobacillus johnsonii ATCC 33200]
 gi|262397946|emb|CAX66960.1| tyrosine recombinase XerC [Lactobacillus johnsonii FI9785]
          Length = 307

 Score =  119 bits (298), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 41/279 (14%), Positives = 107/279 (38%), Gaps = 26/279 (9%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQ----IIRKSGDFDYRKITTKHIRSGVESR 126
             LI +++   ++  + + N+  S+ +  ++         G   + ++ ++ +   +++ 
Sbjct: 6   DKLIKQFQDYLNYERNYSKNTVNSYLNDLNEAKEFFKENGGFSGWDQVKSRDVEIFLQNL 65

Query: 127 K---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
                + ++  + ++S+R  +++ V++E +  +P  ++     + +  + + +++M+Q  
Sbjct: 66  ATQNRSRTTQARKMSSLRSFYRFLVKREVLDNDPMQTISLRLGEKKLPQFFYEKEMRQVF 125

Query: 184 SFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELP 238
              +       + R  FE    +G+R S+     +  +  +    +   K      V   
Sbjct: 126 DSLAGHEKLVVRNRAMFELFYATGMRLSEMASLKLDQIDFDLKIILVHGKGNKDRYVPFG 185

Query: 239 DGFMKLL-------AMTPIGKE----TFFINNDKQKMNATQFSIWFKAKATKAGVNKS-- 285
                 L        +  +GK       F+NN  QK+         +    KAGV     
Sbjct: 186 KDAANALKEYCDESRLDLLGKNEDLGYVFLNNRGQKLTGRGIEYIMQQVFIKAGVGGKVH 245

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            H +R   AT   + GA    +    G +++   + YT 
Sbjct: 246 PHMLRHSFATEMLNNGADLRSVQELLGHESLSTTQIYTH 284


>gi|149913845|ref|ZP_01902377.1| tyrosine recombinase XerD [Roseobacter sp. AzwK-3b]
 gi|149812129|gb|EDM71960.1| tyrosine recombinase XerD [Roseobacter sp. AzwK-3b]
          Length = 323

 Score =  119 bits (298), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 53/320 (16%), Positives = 112/320 (35%), Gaps = 48/320 (15%)

Query: 72  KWLISEYRKS-AHWGSLAVNSRISFESYF---DQIIRKSGDFDYRKITTKHIRSGV---E 124
           +  IS + ++ A     A N+  ++       D  +   GD    +     + + +   +
Sbjct: 5   RHWISAFLEAQAAELGAAQNTLQAYARDLSDFDAWLASQGDT-IEQADQSRVEAYLVHCD 63

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
           ++    ++  + L++++ L+++A  +     NP ++++ P R  +  +  +++++     
Sbjct: 64  AQGLARATRARRLSAIKQLYRFAFEERLRDDNPAITIKGPGRSRKLPKTLSEKEVDLLLG 123

Query: 185 FWSEGSQPRLA---------FEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIIT 234
             +  +  R A          E L  +G+R S+     V   + N    +   K G    
Sbjct: 124 --AARTHGRSATDRVRNTCLMELLYATGMRVSELVALPVAAARGNPQMLLIRGKGGKERM 181

Query: 235 VELPDGFMKLL---------------AMTPIGKETFFINNDK-QKMNATQFSIWFKAKAT 278
           V L      ++                    G    F ++ K   +   +F +  K  A 
Sbjct: 182 VPLSPDARDVMVEWLKLRDAADAAARKAGKPGSPFLFPSSGKIGHLTRHRFYMLIKELAV 241

Query: 279 KAGV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIR---- 330
             GV     + H +R   AT     GA    +    G   V   E YT    +R+R    
Sbjct: 242 AGGVSPDKVTPHTLRHAFATHLLANGADLRAIQTLLGHADVATTEIYTHVLEERLRELVQ 301

Query: 331 ----LGIKNSRRISSVVDSD 346
               L + + R+      SD
Sbjct: 302 EHHPLAVASRRKSGGSTSSD 321


>gi|330444894|ref|ZP_08308549.1| tyrosine recombinase XerC [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328489204|dbj|GAA03046.1| tyrosine recombinase XerC [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 297

 Score =  119 bits (298), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 35/268 (13%), Positives = 87/268 (32%), Gaps = 22/268 (8%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV------ESRKHTP 130
           EY +S     L+++++ +++    +I  +  +                            
Sbjct: 10  EYLRSER--ELSLHTQQNYKRQLTRIAEQLVELKVESWQQVDAGWVRQIASKGMRDGLKA 67

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WS 187
           SS    L+++R  F + V Q  +  NP   V  P++     +    ++M Q         
Sbjct: 68  SSLAMRLSALRSFFDFLVHQNVLKANPAKGVAAPRKSRPLPKNLDVDEMNQLLDVNEDDP 127

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELP 238
              + R   E +  +GLR S+     ++++  +   ++    G    +          + 
Sbjct: 128 LAIRDRAMMELMYGAGLRLSELVGIDLRNISLSKGDLRVIGKGDKERIVPFSGLAREWVA 187

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATI 296
                  ++    ++  F++    +++             K  V  + + H +R   AT 
Sbjct: 188 KWLKLRDSIAQADEQALFVSKLGHRISTRNVQKRMAEWGQKQAVSSHINPHKLRHSFATH 247

Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324
             ++      +    G   +   + YT 
Sbjct: 248 MLESSGDLRAVQELLGHANLSTTQIYTH 275


>gi|163851935|ref|YP_001639978.1| tyrosine recombinase XerD [Methylobacterium extorquens PA1]
 gi|163663540|gb|ABY30907.1| tyrosine recombinase XerD [Methylobacterium extorquens PA1]
          Length = 328

 Score =  119 bits (298), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 45/273 (16%), Positives = 85/273 (31%), Gaps = 28/273 (10%)

Query: 85  GSLAVNSRISFESYFDQIIRK-----SGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
              A N+  ++    D  +           + +    +   + +E R    SSA + L+ 
Sbjct: 27  RGAAANTLAAYRRDLDDYLGYLAQGGIDPEEAQAEQVRAYIASLEPRGLKASSAARRLSC 86

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP------- 192
           +R   ++   + Y   +P   V  P+R     +  +  ++ +  +   E  +        
Sbjct: 87  IRGFHRFLYAEGYAETDPTAPVAAPRRAKGLPKVLSVAEVDRLLATARERVEAAGDDRAE 146

Query: 193 -------RLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKL 244
                      E L  +GLR S+              + +   K G    V L D   + 
Sbjct: 147 ARAAARMLCLLELLYATGLRVSELVALPRSAAATRERYLVVKGKGGRERLVPLTDLAREA 206

Query: 245 LAM-----TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATI 296
           +       T  G   F   ++   +    F+   K  A  AG+     S H +R   A+ 
Sbjct: 207 MRTHVAHLTAEGSWLFPAESESGHLTRQAFARDLKTAAAAAGLRTDRVSPHVLRHAFASH 266

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRI 329
               GA    +    G   +   + YT   D  
Sbjct: 267 LLQNGADLRIVQELLGHADISTTQIYTHVLDER 299


>gi|126661477|ref|ZP_01732531.1| tyrosine recombinase xerC [Cyanothece sp. CCY0110]
 gi|126617235|gb|EAZ88050.1| tyrosine recombinase xerC [Cyanothece sp. CCY0110]
          Length = 285

 Score =  119 bits (298), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 52/264 (19%), Positives = 93/264 (35%), Gaps = 24/264 (9%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP- 130
            WL    + S H   L  N+   F+S                +  + I+  ++S K    
Sbjct: 15  SWLFD--KNSNHTRQLYNNTLKQFQS--------FSSEPLSNVKIEDIQLWIDSLKLRGY 64

Query: 131 --SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI-RPWTKEDMQQFKSFWS 187
              +    +  ++ LF +     Y+  N    V+ PK K     R     D+++      
Sbjct: 65  SLHTIRVKVLCLKSLFSYCFDVGYLPFNVAARVKPPKPKETLSQRLLNVADIEKLIRATK 124

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHL---QNNIFSIKTQKTGTIITVELPDGFMKL 244
              +  L    +   GLR S++ R   Q L   ++   ++   K G    V +P G    
Sbjct: 125 TH-RDFLMLSLIYACGLRISEASRLTWQDLQPRKDGGQALIDGKGGQSRVVLIPVGLWAK 183

Query: 245 LAM----TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISA 298
           L           +  F +  ++++  ++     K  A  AG+N   SAH +R   AT S 
Sbjct: 184 LMAFQSLRSPHTDAVFYSRRQKELARSRIHQIVKQAALDAGINPKTSAHWLRHAHATHSL 243

Query: 299 DAGATAHELMATYGWKTVDQAETY 322
           + G     L  + G   +   + Y
Sbjct: 244 ENGCDISLLQQSLGHSDITTTQRY 267


>gi|326203021|ref|ZP_08192887.1| integrase family protein [Clostridium papyrosolvens DSM 2782]
 gi|325986667|gb|EGD47497.1| integrase family protein [Clostridium papyrosolvens DSM 2782]
          Length = 329

 Score =  119 bits (298), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 88/226 (38%), Gaps = 20/226 (8%)

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWA-VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
             R +T  +  + + S++  F +   + + + INP + +E PK      R    ++ ++ 
Sbjct: 88  NKRDNTSHARARKVASLKSFFNYLSTKAKLLDINPTIELESPKILKRLPRYLNFDESKKL 147

Query: 183 -----KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237
                ++      +        L  G+R S+     + ++++N  ++   K G   ++ L
Sbjct: 148 LTSVTEANHEYSVRDYAIITIFLNCGIRLSELVGINLYNIKDNTLTV-FGKGGKERSIPL 206

Query: 238 ----PDGFMKLLAMTPI----GKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSA 286
                      + + P+     K   FI+   Q+++        K    +AG++    S 
Sbjct: 207 NKACLQAIEDYMKIRPVNGLKDKSALFISRRNQRISKESVQKIVKRYIKEAGLDPQRYST 266

Query: 287 HGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGADRIRL 331
           H +R  +AT+    G      L    G +++   E YT   D+ +L
Sbjct: 267 HKLRHTAATLMYKYGNVDIRALQEILGHESISTTEIYTH-LDQQQL 311


>gi|58617409|ref|YP_196608.1| integrase/recombinase [Ehrlichia ruminantium str. Gardel]
 gi|58417021|emb|CAI28134.1| Integrase/recombinase [Ehrlichia ruminantium str. Gardel]
          Length = 318

 Score =  119 bits (298), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 40/269 (14%), Positives = 88/269 (32%), Gaps = 30/269 (11%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDF--------DYRKITTKHIRSGVESR---KHTPSSA 133
              ++N+ +S+    D++I              D   +    +R    SR        + 
Sbjct: 27  KRYSLNTVVSYVRDLDKLIEFLHKSTGCSVTLNDLVHVKIGDLRKWFASRYQCGVEAVTN 86

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS------ 187
            + L+++R  F++  R  Y+       + RP  K    +      ++   +++       
Sbjct: 87  ARSLSALRNFFRYLSRMYYIDSQAVFYLSRPHLKKTLPKVLAGSHIEIILNYYKQLPQNW 146

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP----DGFMK 243
              +       L  SG R S+      Q ++ +   I  +     + V +         +
Sbjct: 147 VDMRNFAIMMLLYGSGFRISEVVNLKFQDVREDRLFITGKGNKERV-VPILSVVYKSLCQ 205

Query: 244 LLAMTP------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSAT 295
            +   P         +  F+    +K++ T F+   +    + G+    +AH  R   AT
Sbjct: 206 YIECCPYYLGARPNNQYIFVGVRGKKLSRTHFANIMQKLRAEMGLPDITTAHTFRHSFAT 265

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTK 324
                GA    +    G  ++   + YT 
Sbjct: 266 HLFIGGADIRSVQELLGHTSLSTTQIYTH 294


>gi|307692278|ref|ZP_07634515.1| Phage integrase [Ruminococcaceae bacterium D16]
          Length = 527

 Score =  119 bits (298), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 54/297 (18%), Positives = 103/297 (34%), Gaps = 38/297 (12%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKH- 128
            +  ++E+ ++     L   +++ +E +    +I   G+    ++T    +      K  
Sbjct: 72  FRDWLNEWYQNDAKPRLRPTTQLQYEGFLQHHLIPGLGEIPLNQLTQGEFQQFFRHMKEN 131

Query: 129 ---------TPSSAIQFLTSMRVLF----KWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
                     P  A + + S   +       AV ++ +  NP +  + P  K + ++  T
Sbjct: 132 GRKVQVERYGPGMADRSVRSCHAVCQMALDKAVEEKLIHANPAVGCKLPPLKGKEMKILT 191

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---------------NN 220
            E++Q+F           L F   L +G+R  +        L                  
Sbjct: 192 LEEIQRFLIRAKAEGMYEL-FLLELTTGMRRGELLALRWDDLDFVTGKLHIDKQVYPVGG 250

Query: 221 IFSIKTQKTGTI-ITVELPDGFMKLLAMTPIGKETFFI----NNDKQKMNATQFSIWFKA 275
              I   KT     T+ LP   ++LLA    G  +  +       +Q ++        + 
Sbjct: 251 KLVISEPKTKAANRTIILPPAMVELLAEYKKGVFSDLMFPSRTKPEQPIDPCYVRKRLQV 310

Query: 276 KATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIR 330
              +AG NK   H +R   AT+S + G     L    G  + +    TYT   D +R
Sbjct: 311 ILKRAGCNKVRFHDLRHTFATMSLENGMDIKTLSTIIGHVSAETTLNTYTHITDDMR 367


>gi|229150814|ref|ZP_04279026.1| DNA integration/recombination/invertion protein [Bacillus cereus
           m1550]
 gi|228632603|gb|EEK89220.1| DNA integration/recombination/invertion protein [Bacillus cereus
           m1550]
          Length = 369

 Score =  119 bits (298), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 48/312 (15%), Positives = 109/312 (34%), Gaps = 38/312 (12%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE 124
               TLK  ++ + +     S+  ++   + ++ +  +I   G     K+   HI+   +
Sbjct: 60  PSKVTLKGYLNHWLEIKS-MSIEKSTFAGYRAFINQHVIPSIGMVALHKLNVMHIQKCYK 118

Query: 125 SRKHTPSSAIQFLTSMRVL---FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
           +      S+   L   R+L      AV+Q  ++ NP    E PK++   I+ WT+E++++
Sbjct: 119 NAIDKGISSNSILLMHRILKSALNLAVKQNIMSRNPADFAEIPKKEKTPIQTWTEEEVKK 178

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--------------NNIFSIKTQ 227
           F +  S+ S+  + +   + +G+R  +      Q +               +N      +
Sbjct: 179 FLA-HSQESRYHIGYLLAITTGMRLGEVLGLRWQDIDFEKHTVTINQTSGHDNKIKKTAK 237

Query: 228 KTGTIITVELPDGFMKLLAMTPI--------------GKETFFINNDKQKMNATQFSIWF 273
              +  T+ +P+  +  L    I               ++    N   + +    F   F
Sbjct: 238 TNSSKRTIPVPNETIAALKKHKILINKEKLRFGSAYLDQDLINCNEFGRIIKRAHFRKSF 297

Query: 274 KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRL 331
                K G+ +   H +R   AT+    G     +    G   +      Y+       +
Sbjct: 298 IRMTHKVGIKEIKFHDLRHTHATLLLKQGVNPKIISERLGHTDISMTLSVYSHVL--PNM 355

Query: 332 GIKNSRRISSVV 343
             +  +     +
Sbjct: 356 QEEAVKNFGKSI 367


>gi|159037538|ref|YP_001536791.1| site-specific tyrosine recombinase XerD [Salinispora arenicola
           CNS-205]
 gi|157916373|gb|ABV97800.1| tyrosine recombinase XerD [Salinispora arenicola CNS-205]
          Length = 345

 Score =  119 bits (298), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 47/278 (16%), Positives = 87/278 (31%), Gaps = 39/278 (14%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKIT-------TKHIRSGVESRKHTP----SSA 133
             LA N+  S+     + +         ++          H+          P    SSA
Sbjct: 48  RGLAANTLASYRRDLGRYLDTLASVGVTELASVDPGQVEVHLARLRAGDDGHPPLAASSA 107

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW------- 186
            +  +++R L ++A+R+    ++P   +          R    +D+ +            
Sbjct: 108 ARAASAVRGLHRFALREGLAGVDPSRDLRPAAPPRRLPRALPVDDVLKLLEAAGSVAATG 167

Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFM 242
                  + R   EFL  +G R S++    V  L  +  ++    K G    V +    +
Sbjct: 168 DGAPLALRDRALLEFLYGTGARISEAVGVAVDDLDTDTGAVLLRGKGGRNRLVPIGGYAV 227

Query: 243 KLLA-----------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK------S 285
             L                G    F+N     ++        +  A +AG+        S
Sbjct: 228 AALRGYLVRARPGLAAAGRGTPAVFLNARGGPLSRQGAWAILRGAARRAGLPGVGAEAVS 287

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
            H +R   AT   D GA    +    G  +V   + YT
Sbjct: 288 PHTLRHSYATHLLDGGADVRVVQELLGHASVTTTQVYT 325


>gi|307262299|ref|ZP_07543948.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           12 str. 1096]
 gi|306868062|gb|EFM99889.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           12 str. 1096]
          Length = 336

 Score =  119 bits (298), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 36/259 (13%), Positives = 89/259 (34%), Gaps = 19/259 (7%)

Query: 85  GSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLT 138
              + ++  +++     +     ++G   ++++ +  +R  +     +     S    L 
Sbjct: 53  KQASQHTLSNYQRQLLAVSDMLSQAGISTWQEVNSATVRWIIAQSNKQGLGAKSIALRLV 112

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS---FWSEGSQPRLA 195
           ++R  F + +RQE +++NP + ++ PK      +    E + Q  +         +    
Sbjct: 113 ALRQWFSYLIRQEKMSVNPAVGIKAPKASKRLPKNIDAEQIGQLLTSDSHEPSDLRDLAM 172

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMT------ 248
            E +  SGLR S+     +  +      ++   K      V +    ++ L         
Sbjct: 173 MELMYSSGLRLSELQGLDLGDMDLAGREVRLLGKGNKERIVPIGSKALEALNRWLAVRNQ 232

Query: 249 -PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAH 305
                   F+N    +++     +  +    K G+  +   H +R   AT   +A     
Sbjct: 233 FKPQDNAVFLNKRGGRLSHRSIQLVMQKWGEKQGLESHLHPHKLRHSFATHMLEASGDLR 292

Query: 306 ELMATYGWKTVDQAETYTK 324
            +    G   +   + YT 
Sbjct: 293 AVQELLGHSNLATTQIYTH 311


>gi|83590631|ref|YP_430640.1| Phage integrase [Moorella thermoacetica ATCC 39073]
 gi|83573545|gb|ABC20097.1| Phage integrase [Moorella thermoacetica ATCC 39073]
          Length = 390

 Score =  119 bits (298), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 57/360 (15%), Positives = 116/360 (32%), Gaps = 44/360 (12%)

Query: 26  RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG 85
            +G  RR+ L    +   +     AL     +++          T++  ++ +       
Sbjct: 30  HEGKQRRLTLYGKSKKEVLEKLTQALY----QQQNGGFIEPSKITVEQWLNRWLTDYAKP 85

Query: 86  SLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMR 141
            L  ++  S+E+     +I   G    +K+    I+    S+     +P+        + 
Sbjct: 86  HLRQSTWESYETVLRLHVIPTLGSIPLKKLQPADIQRLYASKLESGLSPTRVRYIHVVLH 145

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201
                A     +  NP  + + P+   + ++P   E +++F     +      AF   L 
Sbjct: 146 EAMSQARESGLLLQNPTEAAKPPRHPKKKVQPLNPEQVKRFLETAKQ-DPLYPAFLLALG 204

Query: 202 SGLRCSDSCRAGVQHLQN--NIFSIKTQ-------------KT-GTIITVELPDGFMKLL 245
           +GLR  +      Q L     I  ++               KT  +   + LP   +  L
Sbjct: 205 TGLRRGEILGLRWQDLDLQKGILQVRQSLIRTREGLKFEEPKTEKSRRQIPLPPSVVAAL 264

Query: 246 AMTPI--------------GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVR 290
                                +  F   + +  +   F+ +F     KAG+     H +R
Sbjct: 265 KRHKAWVNQNKLILGPDYEDHDLVFPVENGRPRDPKGFAEYFNRLLDKAGLPHIRLHDLR 324

Query: 291 KFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVV-DSDDP 348
              AT+    G     +    G  TV    + Y+       L  K + RI  ++   ++P
Sbjct: 325 HTHATLLLLEGVHPKVVQERLGHSTVSITLDIYSHIL--PGLQEKAAERIDGLLQPKENP 382


>gi|328948447|ref|YP_004365784.1| Tyrosine recombinase xerC [Treponema succinifaciens DSM 2489]
 gi|328448771|gb|AEB14487.1| Tyrosine recombinase xerC [Treponema succinifaciens DSM 2489]
          Length = 307

 Score =  119 bits (298), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 46/274 (16%), Positives = 92/274 (33%), Gaps = 29/274 (10%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSG-DFDYRKITTKHIR---SGVESRKHTPSSA 133
           Y  S     L+ N+ +S+           G D     +T + +R     +  RK++ +S 
Sbjct: 15  YLGSVR--GLSENTLLSYRQDLAHFCEFFGNDKSAEGLTLEDLRLFVGYLSRRKYSVASI 72

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF-----KSFWSE 188
            + ++++R LF +  +  Y++ N    ++  ++     R  ++ ++        K     
Sbjct: 73  NRIISAVRGLFAYLKKFGYISKNVSYELKCLRQPKTLPRFMSQVEIDNVCRQPEKKELLW 132

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHL-QNNIFSIKTQKTGTIITVELPDG------- 240
            S+ +  FE +  SG R S+      Q    +   +I T K      V            
Sbjct: 133 ASRDKAIFEMMYSSGCRVSELASLKFQDFTSDFRSAIVTGKGKKDRRVYFEQDARNSLML 192

Query: 241 -FMKLLAMTPIGK-------ETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVR 290
              +  A  P  +          F++     ++A              G   + S H  R
Sbjct: 193 YLKERKARFPQAEKGCAGEVSRIFLSQKGTALSAHGIWYIVSRYTGIEGTGSHVSPHAFR 252

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              AT   ++GA    +    G   +   + YT 
Sbjct: 253 HTFATGMLNSGADIRIVQELLGHSNISTTQRYTH 286


>gi|330962350|gb|EGH62610.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 290

 Score =  119 bits (298), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 38/259 (14%), Positives = 93/259 (35%), Gaps = 19/259 (7%)

Query: 85  GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIR---SGVESRKHTPSSAIQFLT 138
             ++ ++  ++     ++    +K+G   +  +  +H+R   +    +  +  S  + L+
Sbjct: 7   RQVSPHTLEAYRRDLGKVLAFCQKAGLSSWTNLDIQHLRSFTARQHQQGQSSRSLARMLS 66

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRL 194
           ++R  +K+  R+     +P   +  PK +    +    +   Q      E      + + 
Sbjct: 67  AVRGFYKYLNREGICQHDPANGLSPPKGERRLPKTLDTDRAAQLLDGAVEEDFLAQRDQA 126

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV--------ELPDGFMKLLA 246
             E L  SGLR S+     +  L      ++    G+   V        +  + ++ L A
Sbjct: 127 ILELLYSSGLRLSELTGLNLDQLDLRAGLVQVLGKGSKTRVLPVGSKARKALESWLPLRA 186

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAK-ATKAGVNKSAHGVRKFSATISADAGATAH 305
           +T    +  F++   +++         KA    + G N   H +R   A+   ++     
Sbjct: 187 LTNPQDDAVFVSQHGKRLGPRAVQNRVKAAGERELGQNLHPHMLRHSFASHLLESSQDLR 246

Query: 306 ELMATYGWKTVDQAETYTK 324
            +    G   +   + YT 
Sbjct: 247 AVQELLGHADIKTTQIYTH 265


>gi|330997394|ref|ZP_08321245.1| putative tyrosine recombinase XerC [Paraprevotella xylaniphila YIT
           11841]
 gi|329570768|gb|EGG52484.1| putative tyrosine recombinase XerC [Paraprevotella xylaniphila YIT
           11841]
          Length = 293

 Score =  119 bits (298), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 38/264 (14%), Positives = 93/264 (35%), Gaps = 25/264 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESR---KHTPSSAIQFL 137
            + ++ +   +    +         D    +  +    +R  + S      T ++  + L
Sbjct: 14  RNYSLRTVEEYRDDLNAFESYYKKVDSTLSWETMDGDVVRDWMVSMMEAGRTATTVNRRL 73

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-----FKSFWSEGSQP 192
           +++R  +++ +R++++ ++P  +++ PK+K        + +M +     F      G + 
Sbjct: 74  SALRTFYRYLLRRDWIKVDPVRNIQGPKKKKPLPVFLKESEMNRLLDGDFFGNDFLGKRD 133

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250
           +L       +G+R S+      Q +     +  + T K      V   D    LL     
Sbjct: 134 KLIVNTFYVTGIRLSELTSLNNQDVDMWGGVIRV-TGKRNKQRIVPFGDELEALLTAYLD 192

Query: 251 GKETF--------FINNDKQKMNATQFSIWFKAK--ATKAGVNKSAHGVRKFSATISADA 300
            K +         F++   +++   +     +           +S H +R   AT   + 
Sbjct: 193 EKSSLGLEDGGAMFVDEKGERLTNVKVRNLVRHYLGMVTTQKKRSPHVLRHTFATSMLNH 252

Query: 301 GATAHELMATYGWKTVDQAETYTK 324
            A    L    G +++   E YT 
Sbjct: 253 HADLESLKELLGHESISTTEIYTH 276


>gi|302038834|ref|YP_003799156.1| putative phage integrase [Candidatus Nitrospira defluvii]
 gi|300606898|emb|CBK43231.1| putative Phage integrase [Candidatus Nitrospira defluvii]
          Length = 361

 Score =  119 bits (298), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 55/320 (17%), Positives = 114/320 (35%), Gaps = 15/320 (4%)

Query: 17  RHGKIIYYFRKGHGRRIR-LPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75
           +  K+ +     +GR++R      +     A ++ +     +  + +   ++  T + ++
Sbjct: 5   KRNKVWWMSFIHNGRQVRRSTDTTDRRLAEAILAKVRVKLIEGRHFDRLEEENRTFQEMM 64

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK---HTPSS 132
             Y         A  SR+  ++  + ++   G     +I+ K + S    R+     P++
Sbjct: 65  ERYVAERATLK-APKSRLRDQAALNHLLPVFGQKLLSEISPKQLASYKAQRRIEQAAPAT 123

Query: 133 AIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
             + L  +R  F  A+R+ E+   NP   V   + + E  R  T E+  +  +  S   +
Sbjct: 124 INKELQLVRHAFNLAMREWEWCRENPMHRVSLEQVRNEVDRWLTPEEEDRLMAASSPWLR 183

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELP----DGFMKLL 245
                 F L +G+R  +      Q +        +   K GT  T+ L     +      
Sbjct: 184 E--IIVFALNTGMRQGEILNLQWQDVDFSRGTLIVMQSKNGTRRTIPLNTKVYELLASKQ 241

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATA 304
           A T + +   F       +        F     +AG+ +   H +R   AT     G   
Sbjct: 242 AATGLSRGPVFKTPLGNLLQVRFLVREFCEARNRAGIPDFRFHDMRHTFATRLVQRGVDL 301

Query: 305 HELMATYGWKTVDQAETYTK 324
           +++    G KT    + Y  
Sbjct: 302 YKVQRLLGHKTNLMTQRYAH 321


>gi|94264969|ref|ZP_01288740.1| Tyrosine recombinase XerC [delta proteobacterium MLMS-1]
 gi|93454572|gb|EAT04850.1| Tyrosine recombinase XerC [delta proteobacterium MLMS-1]
          Length = 339

 Score =  119 bits (298), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 42/251 (16%), Positives = 87/251 (34%), Gaps = 29/251 (11%)

Query: 103 IRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
              + + D  ++    +R+ V S   ++  SS  + L+++R  F++  +   +  +P  +
Sbjct: 70  EDPAAELDVAQLDATRVRAFVYSLHGRNKSSSVARKLSALRSFFRFLRKNGIINDDPAAA 129

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEG----SQPRLAFEFLLYSGLRCSDSCRAGVQH 216
           +  PK +       + +++         G    ++ R   E L  +GLR S+     +  
Sbjct: 130 IAAPKGEGYLPVVLSVDEVFSLLEMPGAGDRFAARDRAILELLYATGLRVSELAGLDLAQ 189

Query: 217 LQ-NNIFSIKTQKTGTIITVEL-----------PDGFMKLLAMTP---------IGKETF 255
           L   +       K      V +                 LL  T           G +  
Sbjct: 190 LDLADGMVRVVGKGNKERLVPMGTAAVAAIEAYLPQRQVLLRQTAGQQKEGKKARGADPL 249

Query: 256 FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGW 313
            +N+   ++ +       K  A +AG+    S H +R   AT   + GA    +    G 
Sbjct: 250 LVNSRGGRLTSRSIERLVKMYAERAGIAARVSPHALRHSFATHLLEMGADLRVVQELLGH 309

Query: 314 KTVDQAETYTK 324
            ++   + YT 
Sbjct: 310 ASLSTTQRYTH 320


>gi|227488616|ref|ZP_03918932.1| site-specific tyrosine recombinase XerC [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227543219|ref|ZP_03973268.1| site-specific tyrosine recombinase XerC [Corynebacterium
           glucuronolyticum ATCC 51866]
 gi|227091510|gb|EEI26822.1| site-specific tyrosine recombinase XerC [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227181028|gb|EEI62000.1| site-specific tyrosine recombinase XerC [Corynebacterium
           glucuronolyticum ATCC 51866]
          Length = 295

 Score =  118 bits (297), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 38/273 (13%), Positives = 85/273 (31%), Gaps = 19/273 (6%)

Query: 71  LKWLISEYRKSAHWGS-LAVNSRISFESYFDQIIRKS-GDFDYRKITTKHIRSGVESRKH 128
              LI +Y     +    +  +   + S          G   +     +       S   
Sbjct: 6   FHELIEDYCDHLRFNEGKSEATIRGYRSDLLLACEYLNGVAGFTLTGLRAWLGEAVSAGK 65

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-- 186
           + ++  +   ++R    WA +Q Y+  +    +  P +        T +   +       
Sbjct: 66  SRATLARRTAAVRSFSAWAHKQGYLEEDAARRLRVPYKSHHLPTVLTSDQAGEMMGNAGS 125

Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-----ELP 238
               E  +     E L  +G+R ++ C   V  +     ++K    G    V        
Sbjct: 126 HSEPEFLRDSAILELLYATGMRVAELCSLDVADVDGAKNTVKVTGKGNKQRVVPFGAPAR 185

Query: 239 DGFMKLLAM------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRK 291
           +   + ++       T    +  F+     +++  Q     +  A   GV+  + H +R 
Sbjct: 186 NALDQWISAGRGHFATADSGDALFLGVRGGRIDPRQVRRIVETAAANTGVDGITPHSLRH 245

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK 324
            +AT   + GA    +    G  ++   + YT 
Sbjct: 246 TAATHLLEGGADLRAVQEFLGHSSLQTTQIYTH 278


>gi|268592909|ref|ZP_06127130.1| tyrosine recombinase XerC [Providencia rettgeri DSM 1131]
 gi|291311699|gb|EFE52152.1| tyrosine recombinase XerC [Providencia rettgeri DSM 1131]
          Length = 309

 Score =  118 bits (297), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 46/260 (17%), Positives = 83/260 (31%), Gaps = 20/260 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----SRKHTPSSAIQ--FLT 138
             L+  +  ++      I+      +  +               SRK    +A     L+
Sbjct: 28  RRLSPVTITNYRRQLSVIVEMLALLNIHEWQKVDATIVRNIAAKSRKSGLQAASMALRLS 87

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLA 195
           S+R  F W V+Q  +  NP  ++  PK K    +    +++ Q  +         + R  
Sbjct: 88  SLRSFFDWMVQQGELPANPAKAIHAPKSKKRLPKNMDVDEVSQLLNMDSGDPLVVRDRTM 147

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLAMT------ 248
            E +  +GLR S+     V+HL  N        K      V +    +  L         
Sbjct: 148 LEVMYGAGLRLSELVGLDVRHLDLNTGEVWVMGKGSKERRVPMGKTAVSWLQRWLEMREL 207

Query: 249 --PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATA 304
             P     F      ++++       F+    K GVN     H +R   AT   ++    
Sbjct: 208 YDPEDDAVFISTQSGKRISNRNVQKRFEQWGIKQGVNSHINPHKLRHSFATHILESSGNL 267

Query: 305 HELMATYGWKTVDQAETYTK 324
             +    G   +   + YT 
Sbjct: 268 RGVQELLGHANLSTTQIYTH 287


>gi|288956928|ref|YP_003447269.1| integrase/recombinase [Azospirillum sp. B510]
 gi|288909236|dbj|BAI70725.1| integrase/recombinase [Azospirillum sp. B510]
          Length = 355

 Score =  118 bits (297), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 47/280 (16%), Positives = 97/280 (34%), Gaps = 39/280 (13%)

Query: 85  GSLAVNSRISFESYF----DQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSM 140
              AVN+R+++E         + ++    +            V+ +   P +  + L++M
Sbjct: 52  RGAAVNTRLAYERDLADLGRWLAQRGVALEGAGTEDLRAYLAVQGKDGAPRTVARRLSAM 111

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-----SEGSQPRLA 195
           R  +++ + +   + +P   ++ PK+     +  ++ ++    S        EG +    
Sbjct: 112 RQFYRFLLSEGRRSDDPASPLDSPKQGRPLPKILSEAEVGAMLSTAEARGGPEGLRLVAL 171

Query: 196 FEFLLYSGLRCSDSCRAGVQHL-QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254
            E L  +GLR S+     +  + ++    +   K G    V L D  +  LA     +  
Sbjct: 172 LEVLYATGLRVSELVGLPMTAIMRDGRGLLVRGKGGKERMVPLSDPALAALAAYIPVRAH 231

Query: 255 FF-------------------------INNDKQKMNATQFSIWFKAKATKAGVN---KSA 286
           F                          I+ +   +   +F+   K  A  AG++    S 
Sbjct: 232 FIPPGTGAGGGGAGGEGGHSPFLFPSRISAEGY-LTRQRFAQLLKQLAIDAGIDPEKVSP 290

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           H +R   AT   D GA    +    G   +   + YT   
Sbjct: 291 HVLRHAFATHLLDHGADLRSVQKMLGHADIATTQIYTHVV 330


>gi|189184658|ref|YP_001938443.1| putative integrase [Orientia tsutsugamushi str. Ikeda]
 gi|189181429|dbj|BAG41209.1| putative integrase [Orientia tsutsugamushi str. Ikeda]
          Length = 225

 Score =  118 bits (297), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 77/195 (39%), Gaps = 8/195 (4%)

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP--R 193
            L ++R +F  A++   +  NP L +E+ K +    R  + ++M +F       + P  R
Sbjct: 1   MLATLRTMFNKAIKWGLIENNPTLGIEQHKLQARERR-LSYDEMGRFLHVLCGETTPLIR 59

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251
                 LY+G R S+       ++     I+ I   K G    + L D  M++L      
Sbjct: 60  DFALLALYTGARKSNVLEMEWDNIDFERKIWHIPKTKNGKAQNIPLTDEAMEILQARKFT 119

Query: 252 KET--FFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELM 308
            E+     +      +  + +  +     KAG+ N   H +R+  A+   D GA+   + 
Sbjct: 120 SESKWVLPSTTSASGHLERPNNSWHRVCKKAGIKNLRIHDLRRTFASCMGDVGASQRTIS 179

Query: 309 ATYGWKTVDQAETYT 323
                 + +   +YT
Sbjct: 180 IALNHISPESTISYT 194


>gi|169629452|ref|YP_001703101.1| site-specific tyrosine recombinase XerD [Mycobacterium abscessus
           ATCC 19977]
 gi|169241419|emb|CAM62447.1| Tyrosine recombinase XerD [Mycobacterium abscessus]
          Length = 315

 Score =  118 bits (297), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 44/285 (15%), Positives = 89/285 (31%), Gaps = 36/285 (12%)

Query: 75  ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE-----SRKH 128
           I  Y         +A N+  S+     +  +   D    ++         +      R  
Sbjct: 12  IQSYLDHLDVERGVAANTLSSYRRDLRRYQQHLADRKIDRLAEVCETDVSDFVVTLRRGD 71

Query: 129 --------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                   + SSA + L ++R L ++A  +     +   +V+ P       +  T E ++
Sbjct: 72  PANGVPELSASSAARALIAVRGLHRFAAIEGLAPTDVARAVKPPTPNRRLPKSLTVEQVE 131

Query: 181 QFKSFW-------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTI 232
              +             + R   E L  +G R S++    V  +       +   K G  
Sbjct: 132 ALLNAAGGGGSDGPLDLRNRALLELLYSTGARISEAVGLDVDDVDVQARSVLLWGKGGKQ 191

Query: 233 ITVELPDGFMKLLAMTPIGK------------ETFFINNDKQKMNATQFSIWFKAKATKA 280
             V +    ++ L    +                 F+N+   +++           A +A
Sbjct: 192 RLVPVGRPAVEALQAYLVRGRPDLARRGRGGVPALFLNSRGGRLSRQSAWQVLADAAERA 251

Query: 281 GVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
            ++   S H +R   AT   + GA    +    G  +V   + YT
Sbjct: 252 KISAAVSPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYT 296


>gi|148543984|ref|YP_001271354.1| tyrosine recombinase XerD subunit [Lactobacillus reuteri DSM 20016]
 gi|184153379|ref|YP_001841720.1| integrase/recombinase [Lactobacillus reuteri JCM 1112]
 gi|194467806|ref|ZP_03073792.1| integrase family protein [Lactobacillus reuteri 100-23]
 gi|227364897|ref|ZP_03848942.1| tyrosine recombinase [Lactobacillus reuteri MM2-3]
 gi|325682478|ref|ZP_08161995.1| integrase/recombinase XerD [Lactobacillus reuteri MM4-1A]
 gi|148531018|gb|ABQ83017.1| tyrosine recombinase XerD subunit [Lactobacillus reuteri DSM 20016]
 gi|183224723|dbj|BAG25240.1| integrase/recombinase [Lactobacillus reuteri JCM 1112]
 gi|194452659|gb|EDX41557.1| integrase family protein [Lactobacillus reuteri 100-23]
 gi|227070044|gb|EEI08422.1| tyrosine recombinase [Lactobacillus reuteri MM2-3]
 gi|324978317|gb|EGC15267.1| integrase/recombinase XerD [Lactobacillus reuteri MM4-1A]
          Length = 297

 Score =  118 bits (297), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 40/263 (15%), Positives = 92/263 (34%), Gaps = 25/263 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP------SSAIQFLT 138
             L+ N+ +S++   +Q +    D              ++            S+  + ++
Sbjct: 16  RQLSDNTLMSYQRDLEQTVTYLEDRGIVDWQQVDHYLLIDLLNSLRQQGKANSTINRVIS 75

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKR--KTEGIRPWTKEDMQQFKSF----WSEGSQP 192
           S+R  +K+ +R   + INP   ++      +       T+++++Q  +        G + 
Sbjct: 76  SLRQFYKYMIRHHNLTINPMEMIDHQYTFNQPPAPVILTEKEIEQLLAVPDVSTPIGLRD 135

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLL------ 245
           R   E +  +G+R S+     +  L  ++  ++ T K      + L    +K L      
Sbjct: 136 RALLEIMDATGMRVSEVIALDLTALHLDVKLLQLTGKNERERMIPLSQPAVKWLTDYLDR 195

Query: 246 ---AMTPIGKET-FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
               +     ET  F+N     +         K   ++A + K  +   +R   A    +
Sbjct: 196 GRPRLLRDEHETRVFLNAHGYPLTRQGIWKKMKEWVSEAKIKKEVTPQTMRYSFAVHLIE 255

Query: 300 AGATAHELMATYGWKTVDQAETY 322
            GA    +    G+  +   + Y
Sbjct: 256 NGADVQLIQEILGYNAMKALQPY 278


>gi|114319227|ref|YP_740910.1| tyrosine recombinase XerC [Alkalilimnicola ehrlichii MLHE-1]
 gi|114225621|gb|ABI55420.1| tyrosine recombinase XerC [Alkalilimnicola ehrlichii MLHE-1]
          Length = 304

 Score =  118 bits (297), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 48/279 (17%), Positives = 101/279 (36%), Gaps = 24/279 (8%)

Query: 69  TTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIR---S 121
            TL   I  +     +   L+ ++  +++    +      ++G  D   ++   IR   +
Sbjct: 2   ATLDDDIRHFLHHLRYERGLSPHTLQAYQRDLTRFHHWCAENGLADRDAVSAHDIRRFAA 61

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
               +   P S  + L+S+R LF++ VR+  +  NP   V  P+R        + ++  +
Sbjct: 62  ARHRQGLAPGSVQRTLSSLRSLFRYLVREGRLTGNPAEGVAAPRRPRRLPGVLSPDEAAR 121

Query: 182 FKSFWSE----GSQPRLAFEFLLYSGLRCSDSC--RAGVQHLQNNIFSIKTQKTGTIITV 235
                 E      + R  +E +  SGLR +++     G   L   +  +   K      V
Sbjct: 122 LLEGSPEDDPLALRDRALYELIYSSGLRLAEAVGLDLGRLDLTEGLVEV-VGKGAKTRRV 180

Query: 236 EL----PDGFMKLLAMTP----IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--S 285
            +     +     LA+ P      +   F++    +++A          AT +GV +   
Sbjct: 181 PVGGKAREALQAWLAVRPALAGADEPAVFVSQRGGRLSARSVQARLARLATLSGVGRPVH 240

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            H +R   A+   ++      +    G   +   + YT 
Sbjct: 241 PHMLRHSFASHLLESSGDLRAVQELLGHADIATTQVYTH 279


>gi|71897645|ref|ZP_00679890.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella
           fastidiosa Ann-1]
 gi|71732548|gb|EAO34601.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella
           fastidiosa Ann-1]
          Length = 277

 Score =  118 bits (297), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 42/255 (16%), Positives = 86/255 (33%), Gaps = 17/255 (6%)

Query: 87  LAVNSRISFESYFDQIIRKSGDFDYRKI------TTKHIRSGVESRKHTPSSAIQFLTSM 140
           ++ ++  ++      +I   G     ++        +   S    R  +  S  + L++ 
Sbjct: 1   MSSHTLDAYRRDIGALIAWGGQQAVGEVVALDRAQLQAFVSAEHRRGLSAKSLQRRLSAC 60

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WSEGSQPRLAFE 197
           R  + W V++ ++A+NP   +  PK   +  R    ++   F         G + R   E
Sbjct: 61  RGFYTWLVKRGHIAVNPAAGLRAPKALRKLPRILDADEAVSFVQIPTDTPLGLRDRALLE 120

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-----ELPDGFMKLLAMTPIGK 252
               SGLR S+ C      L  +   +     G+   V            +  A +  G 
Sbjct: 121 LFYSSGLRLSELCGLRWDGLDLDAGLVSVLGKGSRQRVVPVGSYALSALREWCASSGGGA 180

Query: 253 -ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMA 309
            +  F       ++A    +  K  A + G+ K    H +R   A+   ++      +  
Sbjct: 181 QQPVFPGRYGGPISARAVQVRIKQLAQRQGMAKHVHPHMLRHSFASHLLESSGDLRGVQE 240

Query: 310 TYGWKTVDQAETYTK 324
             G   +   + YT 
Sbjct: 241 LLGHADITTTQIYTH 255


>gi|302035680|ref|YP_003796002.1| tyrosine recombinase xerC [Candidatus Nitrospira defluvii]
 gi|300603744|emb|CBK40076.1| Tyrosine recombinase xerC [Candidatus Nitrospira defluvii]
          Length = 317

 Score =  118 bits (297), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 41/236 (17%), Positives = 76/236 (32%), Gaps = 19/236 (8%)

Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
           +   +  +      +S  + L  +R  F++ VR   + +NP   V  PK      +  TK
Sbjct: 58  REFLAARDRTGDKKTSLARKLACLRSFFRYLVRIGQLDVNPAEDVRAPKLPKHLSQVLTK 117

Query: 177 EDMQQFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-T 231
           +D      F       G + R   E L  +G R S+        +  +   ++ +  G  
Sbjct: 118 DDAGALMEFPGGTERVGLRDRAILETLYSTGARVSELVGMNCDDISRSEGLVRLRGKGRK 177

Query: 232 IITVELP-------DGFMKLLAMTP------IGKETFFINNDKQKMNATQFSIWFKAKAT 278
              + L        D +   +   P            F N+   ++     +      + 
Sbjct: 178 ERVIPLGIIALEAIDAYHAQIQAVPGPSSGRSDAAAVFRNSRGGRLTTRTIARIVAKYSR 237

Query: 279 KA-GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           +  G     H +R   AT   D GA    +    G  ++   + YT  A    L +
Sbjct: 238 QLTGGAVHPHTLRHSFATHLLDEGADLRAIQEMLGHASLSTTQKYTHLATDQLLAL 293


>gi|260893051|ref|YP_003239148.1| integrase family protein [Ammonifex degensii KC4]
 gi|260865192|gb|ACX52298.1| integrase family protein [Ammonifex degensii KC4]
          Length = 311

 Score =  118 bits (297), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 49/272 (18%), Positives = 94/272 (34%), Gaps = 18/272 (6%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF-DYRKITTKHIRSGVESRKH 128
           +L  L+ E+  +     LA  +  ++       +R  G    Y ++    IR    +R  
Sbjct: 10  SLPDLLEEFLLARKADGLAELTLSTYRKIVTAFVRFCGPLVGYEELRRAAIRYF--ARPS 67

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS- 187
           +P      L  ++  F W VR+ ++  NP   + + K     +R    E +++  +    
Sbjct: 68  SPGYHNIKLRHLKAFFNWCVREGHLPANPLEGIRKAKEDLSRVRHAPLEALKRLLAQPDR 127

Query: 188 ---EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ--KTGTIITVELPD- 239
               G +        L +G R  +  R     L        I+ +  KT    T+ +   
Sbjct: 128 KTYAGLRDYCLLLTQLDTGARPGELLRVTPSDLNLAARELHIRPEVAKTRVGRTLVVSPL 187

Query: 240 ---GFMKLLAMTPI---GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFS 293
                 +LL   P     +   F +   + MN T ++   +    +AGV  + +G+R   
Sbjct: 188 TAQALARLLRARPSWWGEEVPLFASETGKPMNPTYWAERVREYCQRAGVKVTPYGLRHTF 247

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKG 325
           A     A      L    G + +     Y + 
Sbjct: 248 ALEFLKASNDPFALQRVLGHRDLSMTRRYVRY 279


>gi|238027662|ref|YP_002911893.1| phage integrase family protein [Burkholderia glumae BGR1]
 gi|237876856|gb|ACR29189.1| Phage integrase family protein [Burkholderia glumae BGR1]
          Length = 368

 Score =  118 bits (297), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 62/373 (16%), Positives = 110/373 (29%), Gaps = 54/373 (14%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
           LP  V ++   HG   +YF     +  RL    +       ++ L     K       R 
Sbjct: 11  LPARVYEK---HGS--WYFVDMRRKWHRLCSTTDG------LTRLYEQLAKFNREADERG 59

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF-DYRKITTKHIRSGVES 125
              T+  LI ++         A+ +R  +      +  + G       +    I   ++ 
Sbjct: 60  IADTMPALIDDWLL-VKLPKYALKTREEYRRMATFVKSEFGPQWTVEDVRPADIARFLDK 118

Query: 126 -RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
                P+++ ++   + ++F  AVR+     NP   V   + K    R  T  +++  ++
Sbjct: 119 HFSTKPNTSNKYKALLSLIFAHAVRKGLRDRNPAREVAGAEEKAR-DRYITDMELEAVRA 177

Query: 185 FWSEGSQPR---------LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT----GT 231
               G   R            +    +  R  D      Q + N+       KT    G 
Sbjct: 178 AALVGLDGRPTASGTTIVCLIDLAYQTAQRIGDLLALNWQDVSNDGLFFHPSKTVNSSGV 237

Query: 232 IITVELPDGFMKLLAMTPIGK----ETFFINNDKQKMNATQFSIWFKAKATKA------- 280
            + ++L       L     GK           D  +   +     +K    +A       
Sbjct: 238 RLLIQLTPDLRATLDAAKAGKVKAIGPIICTQDGARYTYSGAQTAWKRAIKRARKSYEGE 297

Query: 281 ------------GVNKSAHGVR-KFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
                        V    H +R K         GA      A  G  T +    YTK  +
Sbjct: 298 CAAKGTEPDPRFLVGMHFHDLRAKALTDKQRLEGA--RAAQALAGHTTAEMTAHYTKARE 355

Query: 328 RIRLGIKNSRRIS 340
             R+     RR S
Sbjct: 356 VERVTPVPMRRTS 368


>gi|327395985|dbj|BAK13407.1| tyrosine recombinase XerC [Pantoea ananatis AJ13355]
          Length = 301

 Score =  118 bits (297), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 37/259 (14%), Positives = 82/259 (31%), Gaps = 19/259 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRK---ITTKHIRSGVESRKHTPSSAIQF---LT 138
             L+  +  S+      ++  + +        +    +RS     +    +A      L+
Sbjct: 20  RQLSPLTLSSYARQLAALVTIADEMKISAWSQLDPAMVRSMAARSRRAGLAASSLALRLS 79

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLA 195
           ++R    W V ++ +A NP   +  P+      +    +D+ Q            + R  
Sbjct: 80  ALRSFLDWQVSRDMLAANPAKGIATPRNGRHLPKNIDVDDVNQLLEIDLTDPLAIRDRTM 139

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLA-------M 247
            E +   GLR S+      +H+           K      V +    +  +         
Sbjct: 140 LEVMYGGGLRLSELVNMDCRHVDLEAGEVWVLGKGSKERRVPIGRTAVSWIQQWLPLRTA 199

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAH 305
              G +  F+++   +++A      F     K G+  +   H +R   AT   ++     
Sbjct: 200 FNPGDDALFLSSRGSRISARNVQKRFAEWGIKQGISSHIHPHKLRHSFATHLLESSGDLR 259

Query: 306 ELMATYGWKTVDQAETYTK 324
            +    G   +   + YT 
Sbjct: 260 AVQELLGHANLSTTQIYTH 278


>gi|315444421|ref|YP_004077300.1| tyrosine recombinase XerD subunit [Mycobacterium sp. Spyr1]
 gi|315262724|gb|ADT99465.1| tyrosine recombinase XerD subunit [Mycobacterium sp. Spyr1]
          Length = 320

 Score =  118 bits (297), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 45/274 (16%), Positives = 91/274 (33%), Gaps = 35/274 (12%)

Query: 85  GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKH----------TPS 131
             +A N+  S+     +        G  D   +T   +   + + +           +  
Sbjct: 28  RGVAANTLSSYRRDLRRYAEHLKARGVGDLAAVTETDVSEFLVALRLGDPDGGVVPLSAV 87

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF--------K 183
           SA + L ++R L ++A  +   AI+    V+ P       +  + +++           +
Sbjct: 88  SAARALIAVRGLHRFAAAEGIAAIDVARDVKPPTPSRRLPKSLSIDEVLALLEAAGGDSE 147

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFM 242
           +      + R   E L  +G R S++    +  +  +    +   K G    + +    +
Sbjct: 148 ADSPLTLRNRALLELLYSTGARISEAVGLDIDDVDTSARSVLLRGKGGKQRLIPIGRPAV 207

Query: 243 KLL-----------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289
             L           A    G    F+N    +++        +  A +AGV    S H +
Sbjct: 208 TALETYLVRGRPDLARRGRGTPAIFLNARGGRLSRQSAWQVLQDAAGRAGVTATVSPHVL 267

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           R   AT   D GA    +    G  +V   + YT
Sbjct: 268 RHSFATHLLDGGADVRVVQELLGHASVTTTQIYT 301


>gi|269215886|ref|ZP_06159740.1| tyrosine recombinase XerD [Slackia exigua ATCC 700122]
 gi|269130836|gb|EEZ61912.1| tyrosine recombinase XerD [Slackia exigua ATCC 700122]
          Length = 315

 Score =  118 bits (297), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 35/264 (13%), Positives = 76/264 (28%), Gaps = 24/264 (9%)

Query: 88  AVNSRISFESYFDQIIR------KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMR 141
           +  +  S+ +  +  +            D  +       + +  R +  +S  + +++++
Sbjct: 35  SDLTVRSYAADLEDYVAFLDSEGVHAARDVTRDALASYVADLSGRGYAAASIERHVSALK 94

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLAFE 197
               + VR   VA +P  ++  P          + + +             G +   A E
Sbjct: 95  GFHAFLVRDGLVASDPACALPLPGVPARLPDVLSIDQVNTLLDQEFREGPLGVRNACALE 154

Query: 198 FLLYSGLRCSDSCRAGVQH-LQNNIFSIKTQKTGTIITVEL-----------PDGFMKLL 245
            L   GLR S+           +        K      V +            +    LL
Sbjct: 155 LLYGCGLRASELSGLDAGDAFLDEGILRIVGKGSRERIVPIGGSAARCLASYLEDARPLL 214

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATA 304
                      +N    +++        +      G+ +   H +R   AT   + GA  
Sbjct: 215 RSPRRLTPAVMLNARGGRLSRQSIHSIVREAGHVIGIKDLHPHTLRHSFATHLLEGGADL 274

Query: 305 HELMATYGWKTVDQAETYTKGADR 328
             +    G   +   + YT   DR
Sbjct: 275 RAIQEMLGHSDISTTQIYTH-VDR 297


>gi|319900908|ref|YP_004160636.1| tyrosine recombinase XerC subunit [Bacteroides helcogenes P 36-108]
 gi|319415939|gb|ADV43050.1| tyrosine recombinase XerC subunit [Bacteroides helcogenes P 36-108]
          Length = 294

 Score =  118 bits (297), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 39/263 (14%), Positives = 94/263 (35%), Gaps = 23/263 (8%)

Query: 85  GSLAVNSRISFESYFDQI----IRKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFL 137
            + +  +   + +   ++        GD     +  + +R  +     +    ++  + L
Sbjct: 15  RNYSEGTVKYYRADILELQKFGEEMLGDLTPSDVDAELVREWITFLMDKGCASNTVNRKL 74

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-----EGSQP 192
           +S+R  +++ +++  VA++P   +  PK+K        + +M +           +G + 
Sbjct: 75  SSIRTYYRFLLQRGMVAMDPLQKIVGPKKKKPLPTFLRQGEMDRLLDDIDFGEGFKGCRD 134

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLA----- 246
           R+  E    +G+R S+      + +  +   IK T K      +         +      
Sbjct: 135 RMIIEMFYATGMRLSELIGLNDKDVDFSASLIKVTGKRNKQRLIPFDKELELSMRKYVNV 194

Query: 247 ---MTPIGKETFFINNDKQKMNATQFSIWFKA--KATKAGVNKSAHGVRKFSATISADAG 301
                PI  + FF+  + +++  +      K           +S H +R   AT   + G
Sbjct: 195 RNEAIPIRTDAFFVRKNGRRLYRSIVEYLVKRNLSKVVTVKKRSPHVLRHTFATAMLNNG 254

Query: 302 ATAHELMATYGWKTVDQAETYTK 324
           A    +    G +++   E YT 
Sbjct: 255 ADLGSIKELLGHESLATTEIYTH 277


>gi|218897574|ref|YP_002445985.1| DNA integration/recombination/invertion protein [Bacillus cereus
           G9842]
 gi|218543461|gb|ACK95855.1| DNA integration/recombination/invertion protein [Bacillus cereus
           G9842]
          Length = 369

 Score =  118 bits (297), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 48/312 (15%), Positives = 109/312 (34%), Gaps = 38/312 (12%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE 124
               TLK  ++ + +     S+  ++   + ++ +  +I   G     K+   HI+   +
Sbjct: 60  PSKVTLKDYLNHWLEIKS-MSIQKSTFAGYRAFINQHVIPSIGMVALHKLNVMHIQKCYK 118

Query: 125 SRKHTPSSAIQFLTSMRVL---FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
           +  +   +    L   R+L      AV+Q  ++ NP    E PK++   I+ WT+E++++
Sbjct: 119 TAINKGITNNSILLMHRILKSALNLAVKQNIISRNPADFAEIPKKEKTSIQTWTEEEVKK 178

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--------------NNIFSIKTQ 227
           F +  S+ S+  + +   + +G+R  +      Q +               +N      +
Sbjct: 179 FLA-HSQESRYHIGYLLAITTGMRLGEVLGLRWQDIDFEKHTVTINQTSGHDNKIKKTAK 237

Query: 228 KTGTIITVELPDGFMKLLAMTPI--------------GKETFFINNDKQKMNATQFSIWF 273
              +  T+ +P+  +  L    I               ++    N   + +    F   F
Sbjct: 238 TNSSKRTIPVPNETIVALKKHKILINKEKLRFGSAYLDQDLINCNEFGRIIKRAHFRKSF 297

Query: 274 KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRL 331
                K G+ +   H +R   ATI    G     +    G   +      Y+       +
Sbjct: 298 IRATHKVGIKEIKFHDLRHTHATILLKQGVNPKIISERLGHTDISMTLSVYSHVL--PNM 355

Query: 332 GIKNSRRISSVV 343
             +  +     +
Sbjct: 356 QEEAVKNFGKSI 367


>gi|226306747|ref|YP_002766707.1| tyrosine recombinase XerD [Rhodococcus erythropolis PR4]
 gi|226185864|dbj|BAH33968.1| tyrosine recombinase XerD [Rhodococcus erythropolis PR4]
          Length = 307

 Score =  118 bits (297), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 44/269 (16%), Positives = 86/269 (31%), Gaps = 33/269 (12%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKIT----------TKHIRSGVESRKHTP---SSAI 134
           A N+ +S+    ++            +             H+R G +     P   SSA 
Sbjct: 20  ARNTLLSYRRDLNRYAEYLDGRGIDDVAGVTENDVTEFVTHLRLGDKDAGVLPLAASSAA 79

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-------- 186
           + L ++R   K++  +  V ++   +V+ P    +  +    +D+               
Sbjct: 80  RTLIAVRGFHKFSAAEGLVGVDVARTVKPPTPGRKLPKALPLDDVIALLDASGGGAAGDG 139

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKLL 245
               + R   E L  +G R +++    V  +       +   K G    V +    +  +
Sbjct: 140 PRDLRDRALLELLYSTGARITEAIDLDVDDIDTETRSVLLKGKGGKQRIVPVGRPAIAAV 199

Query: 246 AM---------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSA 294
                         G    F+N    +++        +  A  AG+    S H +R   A
Sbjct: 200 DAYLVRGRPSLATRGVPALFLNARGGRLSRQSAWQILQDAAASAGIKADVSPHTLRHSFA 259

Query: 295 TISADAGATAHELMATYGWKTVDQAETYT 323
           T   D GA    +    G  +V   + YT
Sbjct: 260 THLLDGGADVRVVQELLGHASVTTTQIYT 288


>gi|58579355|ref|YP_197567.1| integrase/recombinase [Ehrlichia ruminantium str. Welgevonden]
 gi|58417981|emb|CAI27185.1| Integrase/recombinase [Ehrlichia ruminantium str. Welgevonden]
          Length = 318

 Score =  118 bits (297), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 40/269 (14%), Positives = 89/269 (33%), Gaps = 30/269 (11%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDF--------DYRKITTKHIRSGVESR---KHTPSSA 133
              ++N+ +S+    D++I+             D   +    +R    SR        + 
Sbjct: 27  KRYSLNTVVSYVRDLDKLIKFLHKSTGCSVTLNDLVHVKIGDLRKWFASRYQCGVEAVTN 86

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS------ 187
            + L+++R  F++  R  Y+       + RP  K    +      ++   +++       
Sbjct: 87  ARSLSALRNFFRYLSRMYYIDSQAVFYLSRPHLKKTLPKVLAGSHIEIILNYYKQLPQNW 146

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP----DGFMK 243
              +       L  SG R S+      Q ++ +   I  +     + V +         +
Sbjct: 147 VDMRNFAIMMLLYGSGFRISEVVNLKFQDVREDRLFITGKGNKERV-VPILSMVYKSLCQ 205

Query: 244 LLAMTP------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSAT 295
            +   P         +  F+    +K++ T F+   +    + G+    +AH  R   AT
Sbjct: 206 YIECCPYYLGARPSNQYIFVGVRGKKLSRTHFANIMQKLRAEMGLPDITTAHTFRHSFAT 265

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTK 324
                GA    +    G  ++   + YT 
Sbjct: 266 HLFIGGADIRSVQELLGHTSLSTTQIYTH 294


>gi|57239387|ref|YP_180523.1| integrase/recombinase [Ehrlichia ruminantium str. Welgevonden]
 gi|57161466|emb|CAH58391.1| putative integrase/recombinase XerD or XerC [Ehrlichia ruminantium
           str. Welgevonden]
          Length = 312

 Score =  118 bits (297), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 40/269 (14%), Positives = 89/269 (33%), Gaps = 30/269 (11%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDF--------DYRKITTKHIRSGVESR---KHTPSSA 133
              ++N+ +S+    D++I+             D   +    +R    SR        + 
Sbjct: 21  KRYSLNTVVSYVRDLDKLIKFLHKSTGCSVTLNDLVHVKIGDLRKWFASRYQCGVEAVTN 80

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS------ 187
            + L+++R  F++  R  Y+       + RP  K    +      ++   +++       
Sbjct: 81  ARSLSALRNFFRYLSRMYYIDSQAVFYLSRPHLKKTLPKVLAGSHIEIILNYYKQLPQNW 140

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP----DGFMK 243
              +       L  SG R S+      Q ++ +   I  +     + V +         +
Sbjct: 141 VDMRNFAIMMLLYGSGFRISEVVNLKFQDVREDRLFITGKGNKERV-VPILSMVYKSLCQ 199

Query: 244 LLAMTP------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSAT 295
            +   P         +  F+    +K++ T F+   +    + G+    +AH  R   AT
Sbjct: 200 YIECCPYYLGARPSNQYIFVGVRGKKLSRTHFANIMQKLRAEMGLPDITTAHTFRHSFAT 259

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTK 324
                GA    +    G  ++   + YT 
Sbjct: 260 HLFIGGADIRSVQELLGHTSLSTTQIYTH 288


>gi|219683210|ref|YP_002469593.1| site-specific tyrosine recombinase XerC [Bifidobacterium animalis
           subsp. lactis AD011]
 gi|219620860|gb|ACL29017.1| probable integrase [Bifidobacterium animalis subsp. lactis AD011]
          Length = 344

 Score =  118 bits (297), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 47/298 (15%), Positives = 94/298 (31%), Gaps = 44/298 (14%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           EY +S     L+ ++ +++        + +   G  +   +T   +R  +    HT    
Sbjct: 45  EYLRSNR--GLSEHTCMAYRGDILQCLEALDAFGRGNPDDVTLDDLRMWMGRMAHTVGKT 102

Query: 134 IQFLTSM--RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF--------- 182
                ++  R  F WA     +A NP  ++  PK          ++  ++          
Sbjct: 103 SLARKTIAVRSFFTWAYEHGMLAHNPAHALRTPKIDRNLPAVLNEDQAERLMDTVDAEAG 162

Query: 183 -----------KSFWSEGSQPRLAFEFLLYSGLRCSDSC--RAGVQHLQNNIFSIKTQKT 229
                       +  ++  +     E L  +G+R  +      G     N    +  +  
Sbjct: 163 EKNAGKSKDDALNAHAKALRDCAMLELLYATGMRVGELVGLDMGSFDWSNRTVRVLGKGN 222

Query: 230 GTIITVELPDGFMKLLAMTPIGKETF---------FINNDKQKMNATQFSIWFKAKATKA 280
            T +          +      G+  F         FI     +++          +A +A
Sbjct: 223 KTRVIPFGAPAQQAVEHWLHGGRPVFANGNSGNAVFIGVRGCRIDQRVVRQVVHEQAEQA 282

Query: 281 GV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-----DRIRLG 332
           GV + S H +R  +AT   D GA   E+    G  ++   + Y   +     DR R  
Sbjct: 283 GVPDISPHALRHSAATHMLDGGADLREVQEMLGHSSLQTTQRYAHVSIEQLKDRYRQA 340


>gi|134301812|ref|YP_001121780.1| phage integrase family protein [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|134049589|gb|ABO46660.1| phage integrase family protein [Francisella tularensis subsp.
           tularensis WY96-3418]
          Length = 292

 Score =  118 bits (297), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 37/264 (14%), Positives = 93/264 (35%), Gaps = 18/264 (6%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI---RSGVESRKHTPSSAIQFLTSMR 141
            + +  +  +++    Q+ +   D +   +T   I      + ++ ++P +  + L+S+R
Sbjct: 18  KNYSQETINNYQRDLLQLNQALSDKNIISLTHSDILIWIKKLHAQGNSPKTLQRKLSSVR 77

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG---SQPRLAFEF 198
             F + +  E ++ NP   ++ PK      +    +++             ++    F+ 
Sbjct: 78  SFFNFLINSEIISQNPANGIKAPKDSKRLPKVVNTDELAYLLDINPSNDIEARDIACFDL 137

Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLLAMTP 249
           L   G+R S+     ++ +  +  +I+    G    +          L     K+     
Sbjct: 138 LYSCGIRLSELSSVELKDISISQKNIRVTGKGNKQRIVYFGTKTLSNLNRWL-KIRDSLK 196

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATK-AGVNKSAHGVRKFSATISADAGATAHELM 308
              +  FI+ D + +         +  A K A  +   H +R   A+   D+      + 
Sbjct: 197 PSSDYLFISRDGKHLTNRSIQKRLEIFAQKYASRHIHPHMLRHSFASHVLDSSKDLLAVK 256

Query: 309 ATYGWKTVDQAETYTKGADRIRLG 332
              G   +   + YT   +  +L 
Sbjct: 257 DLLGHADISSTQIYTH-LNFQQLA 279


>gi|315655289|ref|ZP_07908190.1| tyrosine recombinase XerD [Mobiluncus curtisii ATCC 51333]
 gi|315490544|gb|EFU80168.1| tyrosine recombinase XerD [Mobiluncus curtisii ATCC 51333]
          Length = 327

 Score =  118 bits (297), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 53/289 (18%), Positives = 91/289 (31%), Gaps = 43/289 (14%)

Query: 66  KKPTTLKWLISEYRKSAHWG------SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119
             P T+     + R+   +       SL   +    ES+   +    GD+          
Sbjct: 30  ASPHTVAAYTRDLRRYITFLVANGVNSLDEVTLPVLESFARALEAGFGDYAAVA------ 83

Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
                     PSSA + + S+R   ++A     V  NP   +   K         T E++
Sbjct: 84  ----------PSSARRAIASVRSWHRYAYETGAVRANPTKGIAPAKVGAHLPTVLTVEEV 133

Query: 180 QQFKSFWSE-----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTI 232
           Q      S        + R   EFL  +G R S++    V  +     I  ++    G  
Sbjct: 134 QTLLEAASATGDDNALRDRALLEFLYATGARISEAVNLAVDDIDLDEEIPLVRLFGKGRK 193

Query: 233 ITVELPDGFMKL------------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280
             + +     K             LA     +   F+N   + ++        +A A +A
Sbjct: 194 ERLSMLGHLAKDALEAYLVRVRPRLAEKGRSQGRVFLNTLGRPLSRQSAWAIIQAVAQRA 253

Query: 281 GV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
            +      H +R   AT     GA    +    G  +V   + YTK  +
Sbjct: 254 QITVPVGPHTLRHCFATHLLQGGADVRAVQELLGHASVTTTQIYTKVTN 302


>gi|167040254|ref|YP_001663239.1| site-specific tyrosine recombinase XerC [Thermoanaerobacter sp.
           X514]
 gi|300914338|ref|ZP_07131654.1| integrase family protein [Thermoanaerobacter sp. X561]
 gi|307724426|ref|YP_003904177.1| integrase family protein [Thermoanaerobacter sp. X513]
 gi|166854494|gb|ABY92903.1| phage integrase family protein [Thermoanaerobacter sp. X514]
 gi|300889273|gb|EFK84419.1| integrase family protein [Thermoanaerobacter sp. X561]
 gi|307581487|gb|ADN54886.1| integrase family protein [Thermoanaerobacter sp. X513]
          Length = 330

 Score =  118 bits (297), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 49/280 (17%), Positives = 92/280 (32%), Gaps = 30/280 (10%)

Query: 92  RISFESY-----FDQIIRKSGDFDYRKITTKHIRSGV-------ESRKHTPSSAIQFLTS 139
           +           FD+I     D D   I +  +             R +TP +  + + S
Sbjct: 54  KQRRRKVSPDVEFDEI--DISDVDVDLIESVDLNDLYAYLNFVANERSNTPHARARKVAS 111

Query: 140 MRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR--LAF 196
           +R  + +  ++ + ++ NP   +E PK         T ++ ++  +      + R     
Sbjct: 112 LRSFYNYLYKKAKVLSKNPTQELESPKLSVRQPIYLTLDESKKLLNSIDGPFKERDYAII 171

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG--------FMKLLAMT 248
              L  GLR S+     +  ++++  ++   K     TV L D                 
Sbjct: 172 TLFLNCGLRVSELVNINLDDIKDDKLTVI-GKGNKQRTVYLNDACINAINTYLKVRPKEG 230

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKA---GVNKSAHGVRKFSATISADAG-ATA 304
              K+  F++   ++++        K     A   G   SAH +R  +AT+    G    
Sbjct: 231 VKDKKALFLSKRLKRISVKTVQYTVKKHLKNANLEGKKYSAHKLRHTAATLMYRYGNVDI 290

Query: 305 HELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
             L    G   V   + YT   D       N   +S   D
Sbjct: 291 RTLQKLLGHSNVSTTQIYTHVDDSQLKEAVNKNPLSQKED 330


>gi|15838084|ref|NP_298772.1| site-specific tyrosine recombinase XerC [Xylella fastidiosa 9a5c]
 gi|34223079|sp|Q9PD96|XERC_XYLFA RecName: Full=Tyrosine recombinase xerC
 gi|9106507|gb|AAF84292.1|AE003977_15 site-specific recombinase [Xylella fastidiosa 9a5c]
          Length = 294

 Score =  118 bits (297), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 40/257 (15%), Positives = 84/257 (32%), Gaps = 17/257 (6%)

Query: 85  GSLAVNSRISFESYFDQIIR------KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLT 138
             ++ ++  ++      +I               +   +   +    R  +  S  + L+
Sbjct: 16  RGMSAHTLDAYRRDIGALIAWGVQQAVGEVVALDRAQLQAFVAAEHRRGLSAKSLQRRLS 75

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WSEGSQPRLA 195
           + R  + W V++ ++AINP   +  PK   +  R    ++   F         G + R  
Sbjct: 76  ACRGFYAWLVKRGHIAINPAAGLRAPKALRKLPRILDADEAVSFVQIPTDTPLGLRDRAL 135

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-----ELPDGFMKLLAMTPI 250
            E    SGLR S+ C      +  +   +     G+   V            +  A +  
Sbjct: 136 LELFYSSGLRLSELCGLRWGGVDLDAGLVSVLGKGSRQRVVPVGSYALSALREWCASSGG 195

Query: 251 GK-ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHEL 307
           G  +  F       ++A    +  K  A + G+ K    H +R   A+   ++      +
Sbjct: 196 GAQQPVFPGRYGGPISARAVQVRIKQLAQRQGMAKHVHPHMLRHSFASHLLESSGDLRGV 255

Query: 308 MATYGWKTVDQAETYTK 324
               G   +   + YT 
Sbjct: 256 QELLGHADITTTQIYTH 272


>gi|300361600|ref|ZP_07057777.1| tyrosine recombinase XerC [Lactobacillus gasseri JV-V03]
 gi|300354219|gb|EFJ70090.1| tyrosine recombinase XerC [Lactobacillus gasseri JV-V03]
          Length = 307

 Score =  118 bits (297), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 42/279 (15%), Positives = 103/279 (36%), Gaps = 26/279 (9%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQ----IIRKSGDFDYRKITTKHIRSGVESR 126
             LI +++   ++  + + N+  S+ +  D+         G   + K+ ++ +   +++ 
Sbjct: 6   DKLIKQFQDYLNYERNYSKNTVSSYLNDLDEAKQFFKENGGFSGWDKVKSRDVEIFLQNL 65

Query: 127 K---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
                + ++  + ++S+R  +++ V++E +  +P  ++     + +  + + +++M+Q  
Sbjct: 66  ATQNRSRTTQARKMSSLRSFYRFLVKREVLENDPMQTISLRLGEKKLPQFFYEKEMRQVF 125

Query: 184 SFWSEGSQ----PRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVEL- 237
                  +     R  FE    +G+R S+     +  +  +    +   K      V   
Sbjct: 126 DSLVGHDRLVVRNRAMFELFYATGMRLSEMASLKLDQIDFDLKIILVHGKGNKDRYVPFG 185

Query: 238 ----------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS-- 285
                      D     L          F+NN  QK+         +    KAGV     
Sbjct: 186 KDALDALKEYRDDVRPALLGQNEDLGYVFLNNRGQKLTGRGIEYIMQQVFIKAGVGGKVH 245

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            H +R   AT   + GA    +    G +++   + YT 
Sbjct: 246 PHMLRHSFATEMLNNGADLRSVQELLGHESLSTTQIYTH 284


>gi|220929076|ref|YP_002505985.1| site-specific tyrosine recombinase XerC [Clostridium cellulolyticum
           H10]
 gi|219999404|gb|ACL76005.1| integrase family protein [Clostridium cellulolyticum H10]
          Length = 330

 Score =  118 bits (297), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 44/226 (19%), Positives = 89/226 (39%), Gaps = 20/226 (8%)

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWA-VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
             R +T  +  + + S++  F +   + + + INP + +E PK      R    ++ ++ 
Sbjct: 88  NKRDNTSHARARKVASLKSFFNYLSTKAKLLDINPTIELESPKILKRLPRYLNFDESKKL 147

Query: 183 -----KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237
                K+      +        L  G+R S+     + ++++N   I   K G   ++ L
Sbjct: 148 LTSVNKADHEYAIRDYAIITIFLNCGIRLSELVGINLHNIKDNTL-IVFGKGGKERSIPL 206

Query: 238 PDGFM----KLLAMTPI----GKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSA 286
               +      L + P+     K   FI+   Q+++        K   T+AG++    S 
Sbjct: 207 NRACLQAIDDYLKVRPVNGLKDKSALFISRRNQRISKESVQKIVKRYITEAGLDPQRYST 266

Query: 287 HGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGADRIRL 331
           H +R  +AT+    G      L    G +++   E YT   D+ +L
Sbjct: 267 HKLRHTAATLMYKYGNVDIRALQEILGHESISTTEIYTH-LDQQQL 311


>gi|313638152|gb|EFS03409.1| tyrosine recombinase XerC [Listeria seeligeri FSL S4-171]
          Length = 300

 Score =  118 bits (297), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 39/281 (13%), Positives = 100/281 (35%), Gaps = 27/281 (9%)

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK------ITTKHIRSG 122
              + L  +Y  S    + + N+  ++E+      R   +    +      +  +   + 
Sbjct: 5   GKWEQLFLDYLHSER--NYSENTSTAYENDLIDFRRFLNEQAITEYSQVTFLDVRIYLTE 62

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ- 181
           ++ +  + ++  + ++S+R  + + +R+  +  NP   V   K +    + +  E+M+  
Sbjct: 63  LKQKSFSRTTVARKISSLRSFYTFLLRENVITENPFTYVSHAKNQLRLPKFFYSEEMEAL 122

Query: 182 ----FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVE 236
               ++   +   + R+  E L  +G+R S+     +  +     +I    K      V 
Sbjct: 123 FQVVYEDNETLTLRDRVLLEVLYGTGIRVSECAGILLTDIDKTYQAILIRGKGNKERYVP 182

Query: 237 L-----------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS 285
                        D  ++L+       ++  IN+  + +             +KA + + 
Sbjct: 183 FGAYAEDAITDYLDSRIELMKHFNKTHDSLLINHYGEPLTTRGIRYCLTKIISKASLTRK 242

Query: 286 --AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              H +R   AT   + GA    +    G  ++   + YT 
Sbjct: 243 IHPHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTH 283


>gi|254472325|ref|ZP_05085725.1| tyrosine recombinase XerD [Pseudovibrio sp. JE062]
 gi|211958608|gb|EEA93808.1| tyrosine recombinase XerD [Pseudovibrio sp. JE062]
          Length = 295

 Score =  118 bits (297), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 39/270 (14%), Positives = 88/270 (32%), Gaps = 33/270 (12%)

Query: 88  AVNSRISFESYFDQI--IRKSGDFDYRKITTKHIRSGVESRKHTPSSAI---QFLTSMRV 142
           A N+  S+ +  +       +   D   +    +R+ +        +A    + L+++R 
Sbjct: 9   AFNTLESYRTDLEDFDSFLTTQGVDLLAVQVTDVRAYLSDLTDRGFAASSQARRLSALRQ 68

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-------------- 188
            +++   ++    +P  +V  P++        ++E++ +      E              
Sbjct: 69  FYQFCYAEDIRDDDPTRTVASPRKAATLPSVLSEEEVDRLIGKAEELANITHDSDAKQIR 128

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQH-LQNNIFSIKTQKTGTIITVELPDGFMKLL-- 245
            ++     E L  +GLR S+     V   ++++       K G    V L       +  
Sbjct: 129 AARIYTLLEVLYATGLRVSELVSLPVSAAIRDSRLITVKGKGGKERAVPLSPRAQSAMVE 188

Query: 246 ------AMTPIGKETFFINNDK--QKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSA 294
                 A+       +   +           F    KA A +A +++   S H +R   A
Sbjct: 189 YVRLRAAVGAYADSVWLFPSHGESGHFTRQAFGRDLKALALEADIDRNKVSPHVLRHAFA 248

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324
           +     GA    +    G   +   + YT 
Sbjct: 249 SHLLQNGADLRVVQQLLGHADISTTQIYTH 278


>gi|296394928|ref|YP_003659812.1| tyrosine recombinase XerD [Segniliparus rotundus DSM 44985]
 gi|296182075|gb|ADG98981.1| tyrosine recombinase XerD [Segniliparus rotundus DSM 44985]
          Length = 306

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 45/266 (16%), Positives = 89/266 (33%), Gaps = 32/266 (12%)

Query: 89  VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES------RKHTPSSAIQFLTSMRV 142
            + R     Y D + ++S   D  ++T+  +   +             SSA + L+++R 
Sbjct: 24  ASYRRDLGRYADFLRQRS-VADLAQVTSAQVAEFLAWSRDPAGMGLAQSSAARGLSAVRG 82

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF---------KSFWSEGSQPR 193
           L ++AV +  VA +    V+ P+      +    + +            +S      + +
Sbjct: 83  LHRFAVLEGMVAQDVAHGVKPPQPGRRLPKALPVDQVIAILEASGIADAESDVPRALRDQ 142

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGK 252
              E +  +G R S++    +  +     S +   K      V L    +  +    +  
Sbjct: 143 ALLELMYCTGCRVSEAVGLNLADVDVPSRSARVLGKGDKERLVPLGSAALAAVEAYLVRG 202

Query: 253 E-------------TFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS 297
                           F+N    + +        +  A KAGV    S H +R   AT  
Sbjct: 203 RPAFLAQRAGKATNALFLNARGARFSRQSAWASLRHAAAKAGVQAEISPHTLRHSCATHL 262

Query: 298 ADAGATAHELMATYGWKTVDQAETYT 323
            + GA    +    G  +V   + YT
Sbjct: 263 LEGGADVRVVQELLGHASVVTTQIYT 288


>gi|218264364|ref|ZP_03478221.1| hypothetical protein PRABACTJOHN_03917 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222062|gb|EEC94712.1| hypothetical protein PRABACTJOHN_03917 [Parabacteroides johnsonii
           DSM 18315]
          Length = 302

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 54/277 (19%), Positives = 102/277 (36%), Gaps = 29/277 (10%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIR-----KSGDFDYRKITTKHIRSGV---ES 125
           I  +     +  + +  +  ++     Q        K G F   ++    +R+ +     
Sbjct: 5   IDSFLDCLRYERNYSEYTIGAYSKDLQQFEDFVKEKKEGIFVPEEVDADIVRNWIISLLD 64

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
            K +P S  + L+S++  FK+ ++Q +V++NP   V  PK K        ++DM++    
Sbjct: 65  NKISPVSVNRKLSSLKSFFKFLMKQGFVSVNPLRFVTGPKTKKPLPTFVKEKDMEELLDG 124

Query: 186 WS-----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPD 239
                  EG + RL  E L  +G+R S+        +  +   IK T K      +   +
Sbjct: 125 DGFDEDFEGVRDRLILEMLYDTGVRRSELVGLQDIDIDYDAMLIKVTGKRNKQRLIPFAE 184

Query: 240 GFMKLLAM--------TPIGKETFFINNDKQKMNATQFSIWFKAK----ATKAGVNKSAH 287
               L+             G   FF+  + ++++        K K     T A    S H
Sbjct: 185 RLKNLMLAYTEVRNREVGAGSGWFFVRKNGEQLSTGILYTIVKKKLSDIPTLA--KCSPH 242

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            +R   AT   + GA  + +    G  ++     YT 
Sbjct: 243 VLRHSFATSMLNNGAELNAVKELLGHSSLASTSIYTH 279


>gi|52079925|ref|YP_078716.1| lambda integrase-like, N-terminal,DNA breaking-rejoining enzyme,
           catalytic core [Bacillus licheniformis ATCC 14580]
 gi|52785296|ref|YP_091125.1| hypothetical protein BLi01531 [Bacillus licheniformis ATCC 14580]
 gi|52003136|gb|AAU23078.1| Hypothetical Lambda integrase-like, N-terminal,DNA
           breaking-rejoining enzyme, catalytic core [Bacillus
           licheniformis ATCC 14580]
 gi|52347798|gb|AAU40432.1| putative protein [Bacillus licheniformis ATCC 14580]
          Length = 352

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 42/212 (19%), Positives = 81/212 (38%), Gaps = 16/212 (7%)

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           +P  A   L +MR +F + +++  ++ NP   + + K+    I+  + E+M+Q     ++
Sbjct: 106 SPKYANDHLKTMRAVFTFCIKENMISENPFQKINKVKQPEPVIQILSVEEMKQLLKTPNK 165

Query: 189 G----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI----KTQKTGTIITVELPDG 240
                 +  +    L+ S  R  +     ++++   +  I    +  KT     + L   
Sbjct: 166 RKFSEFRDYVVMMCLINSMCRIGEIVTLEIENINFELSYIILEAQKTKTRKGRMIPLDKN 225

Query: 241 ----FMKLLAMTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKF 292
                 KLL      K +   FI  +  ++    F       A +AG+NK    H  R  
Sbjct: 226 TMQLLKKLLLRNTRFKPSKYVFITEEGTRLTTDNFRKRLADYAHQAGINKRVHPHLFRHT 285

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324
           +A++   AG     L    G K +     YT 
Sbjct: 286 AASMFLQAGGDLRHLQTIIGHKDLRMVLRYTH 317


>gi|294084567|ref|YP_003551325.1| hypothetical protein SAR116_0998 [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292664140|gb|ADE39241.1| hypothetical protein SAR116_0998 [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 470

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 57/364 (15%), Positives = 112/364 (30%), Gaps = 43/364 (11%)

Query: 13  KERTRHGKIIYYFRKGHGRRI-RLPYPHESTFIPAYMSALTGST---PKREYINSPRKKP 68
              T  GK  YY +    ++I R+       F      A   +T    + +    P+K+ 
Sbjct: 31  ARITPGGKKTYYVQYMVYKKIKRVAIGAHGIFTTE--RARNQATIMLGEIKAGADPQKEK 88

Query: 69  TT------LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRS 121
           +T      ++ L   Y +         ++   +  Y D  +I   GD   + +    +  
Sbjct: 89  STKRKELFVRDLAERYMEEHVIPHCKPSTAKGYRRYLDKHLIPFFGDMKIKDVQRSDVAE 148

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPWTKEDM 179
              S + TP  A   L  +  +F  A          NP   +++   K    R  ++E++
Sbjct: 149 FHHSLRRTPYEANHGLEIISKMFNLAEMWGLRDDHTNPRRHIKKYPSKARE-RYLSEEEV 207

Query: 180 QQFKSFWSE-------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTG 230
           ++  +   E               + LL +G R  +       ++     +  +   KTG
Sbjct: 208 KRLSAVLDEIKQYPDENLAAVYCIQLLLLTGCRLGEIRSLKWDYVDRKMQVLKLPDSKTG 267

Query: 231 TI------ITVELPDGFMKLLAMTPIGKETFFINNDK--QKMNATQFSIWFKAKATKAGV 282
                     + L D      A  P+             +  +       ++     AG+
Sbjct: 268 AKYVYVGNTVMNLLDEVHAHPAR-PVDNPYVI---WGLIEGSHLDNVQKPWRRFRKMAGI 323

Query: 283 -NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
            +   H +R   A+ +   G +   +    G   V     Y        +    +   SS
Sbjct: 324 EDVRIHDLRHSFASFAVSKGMSLAVIGRLLGHTQVQTTARYAH-----LMAAPMTEAASS 378

Query: 342 VVDS 345
           V D 
Sbjct: 379 VTDV 382


>gi|54027830|ref|YP_122070.1| putative recombinase [Nocardia farcinica IFM 10152]
 gi|54019338|dbj|BAD60706.1| putative recombinase [Nocardia farcinica IFM 10152]
          Length = 311

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 47/276 (17%), Positives = 90/276 (32%), Gaps = 23/276 (8%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSSA 133
           I ++       +   N+  ++            D     +T   +R  +       P++ 
Sbjct: 20  IEQFLTDLANANRPANTLRAYRGDLTGFAEHV-DGGIDGVTVAAVRGFLSGIADLAPATR 78

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-FKSFWSEGSQ- 191
            +   ++    +WAVR + +A NP   V+         RP    D+ + F +  +   + 
Sbjct: 79  KRKRAAVAAFCRWAVRHDLLAANPMDKVDTITVPKTLPRPAPAADIAKVFAAICARRPRK 138

Query: 192 --------PRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDG- 240
                    R+ FE     G R S+ C   V+     +    ++    G  +   L D  
Sbjct: 139 DVALDVLRDRVLFETAYVCGARASEVCELYVEDFDLRLDDEHVRLHGKGGTVRTVLLDDR 198

Query: 241 -----FMKLLAMTPIGKETFF---INNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKF 292
                    L  T       F   IN     ++ +     +      AGV+   H +R  
Sbjct: 199 GYVAMLRLYLDRTGYTAGPMFRASINGRGGPLSYSAAHHRWSRYCAAAGVDIDIHQLRHS 258

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
            AT   +AG +   +    G  + +  + Y   AD+
Sbjct: 259 HATELINAGVSIEVVRKRLGHASTETTQIYALLADQ 294


>gi|54310573|ref|YP_131593.1| site-specific tyrosine recombinase XerC [Photobacterium profundum
           SS9]
 gi|46915016|emb|CAG21791.1| putative integrase/recombinase XerC [Photobacterium profundum SS9]
          Length = 313

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 42/268 (15%), Positives = 90/268 (33%), Gaps = 22/268 (8%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV------ESRKHTP 130
           EY +S     L+++++ +++     I  +   F+    T                     
Sbjct: 26  EYIRSER--ELSLHTQQNYKRQLSTIAEQLVSFEVTDWTMVDAGWVRQIASKGMRDGLKA 83

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WS 187
           SS    L+++R  F + V+++ +  NP   V  P++     +    ++M Q  S      
Sbjct: 84  SSISMRLSALRSFFDFLVQKDILKANPAKGVAAPRKARPLPKNLDVDEMDQLLSVNEDDP 143

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLA 246
              + R   E +  +GLR ++     V+ +  +   I+   K      V       + +A
Sbjct: 144 LSIRDRAMMELMYGAGLRLAELVSLNVRDISLSKGDIRVIGKGDKERIVPFAGLAREWVA 203

Query: 247 -------MTPIGKET-FFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATI 296
                      G E   F++    +++             K  V  + + H +R   AT 
Sbjct: 204 NWLKVRGALASGDEVGLFVSKLGTRISTRNVQKRMAEWGQKQAVSSHINPHKLRHSFATH 263

Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324
             ++      +    G   +   + YT 
Sbjct: 264 MLESSGDLRAVQELLGHANLSTTQIYTH 291


>gi|148284245|ref|YP_001248335.1| phage-related integrase [Orientia tsutsugamushi str. Boryong]
 gi|148284475|ref|YP_001248565.1| phage-related integrase [Orientia tsutsugamushi str. Boryong]
 gi|148284530|ref|YP_001248620.1| phage-related integrase [Orientia tsutsugamushi str. Boryong]
 gi|148284668|ref|YP_001248758.1| phage-related integrase [Orientia tsutsugamushi str. Boryong]
 gi|148284694|ref|YP_001248784.1| phage-related integrase [Orientia tsutsugamushi str. Boryong]
 gi|148284733|ref|YP_001248823.1| phage-related integrase [Orientia tsutsugamushi str. Boryong]
 gi|148284760|ref|YP_001248850.1| phage-related integrase [Orientia tsutsugamushi str. Boryong]
 gi|148284814|ref|YP_001248904.1| phage-related integrase [Orientia tsutsugamushi str. Boryong]
 gi|148285024|ref|YP_001249114.1| phage-related integrase [Orientia tsutsugamushi str. Boryong]
 gi|148285095|ref|YP_001249185.1| phage-related integrase [Orientia tsutsugamushi str. Boryong]
 gi|146739684|emb|CAM79481.1| phage-related integrase [Orientia tsutsugamushi str. Boryong]
 gi|146739914|emb|CAM79904.1| phage-related integrase [Orientia tsutsugamushi str. Boryong]
 gi|146739969|emb|CAM80008.1| phage-related integrase [Orientia tsutsugamushi str. Boryong]
 gi|146740107|emb|CAM80274.1| phage-related integrase [Orientia tsutsugamushi str. Boryong]
 gi|146740133|emb|CAM80327.1| phage-related integrase [Orientia tsutsugamushi str. Boryong]
 gi|146740172|emb|CAM80404.1| phage-related integrase [Orientia tsutsugamushi str. Boryong]
 gi|146740199|emb|CAM80478.1| phage-related integrase [Orientia tsutsugamushi str. Boryong]
 gi|146740253|emb|CAM80591.1| phage-related integrase [Orientia tsutsugamushi str. Boryong]
 gi|146740463|emb|CAM80988.1| phage-related integrase [Orientia tsutsugamushi str. Boryong]
 gi|146740534|emb|CAM81117.1| phage-related integrase [Orientia tsutsugamushi str. Boryong]
          Length = 414

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 51/287 (17%), Positives = 98/287 (34%), Gaps = 28/287 (9%)

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKSAH------WGSLAVN----SRISFESYFDQII 103
               R      +    T K L  +Y +         W   A      ++  +E    +I 
Sbjct: 108 ENENRIKERERKANDITFKELCYKYIEEYAKIYTINWKENADRVHTYAQALYEKKISKIR 167

Query: 104 RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163
               +  +  I+ +   +          +A   L ++R +F  A++   +  NP L +E+
Sbjct: 168 MSDIEPIFNDISKEGKYA----------TANALLATLRTIFNKAIKWGLIENNPTLGIEQ 217

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQ--N 219
            K +    R  + ++M +F       + P  R      LY+G R S+       ++    
Sbjct: 218 HKLQARERR-LSYDEMGRFLQVLCGEASPLIRDFALLALYTGARKSNVLEMEWDNIDFER 276

Query: 220 NIFSIKTQKTGTIITVELPDGFMKLLAMTP-IGKETFFINNDKQKMNATQFSI-WFKAKA 277
            I+ I   K G    + L D  M++L     I    + + +   +          +K   
Sbjct: 277 KIWHIPKTKNGKAQNIPLTDEAMEILQARKLISTSKWVLPSSTSESGHLSHPNTAWKIIC 336

Query: 278 TKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
            KA + N   H +R+  A+   DAG +   +         +    YT
Sbjct: 337 EKASIKNFRIHDLRRTFASCMGDAGESQRTISIALNHINPNSTIPYT 383


>gi|83310025|ref|YP_420289.1| integrase [Magnetospirillum magneticum AMB-1]
 gi|82944866|dbj|BAE49730.1| Integrase [Magnetospirillum magneticum AMB-1]
          Length = 285

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 36/252 (14%), Positives = 88/252 (34%), Gaps = 14/252 (5%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSGVESRKHTPSSAIQFLTSMRV 142
            +L+  ++ S+     +  R       R      +  +  + S+  + +S  QF+ ++R 
Sbjct: 18  RNLSPATQRSYLHAVSKFSRFFNRSPDRLDHDDVRTWQVHLVSQGISWASLNQFVAALRF 77

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202
            +   +R   +       +   ++        + +++ +F        + R A      +
Sbjct: 78  FYGVTLRCPEIP----ERIVYARQPRRLPIVLSADEVVRFLEAVPS-LKNRTALTTAYAT 132

Query: 203 GLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLAM---TPIGKETFFI 257
           GLR S+     +  + +    I+    K      V L    + +L         +   F 
Sbjct: 133 GLRVSEVVALKLADIDSGRMVIRVEQGKGRKDRYVMLSAQLLGILRTYWPLARPEHWLFP 192

Query: 258 NNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKT 315
             + + +  T  +   ++    AG++K  + H +R   AT   +AG     +    G   
Sbjct: 193 GREDKPIEPTVLNSACRSACVAAGIDKRVTVHTLRHSFATHLLEAGTDIRIIQVLLGHNN 252

Query: 316 VDQAETYTKGAD 327
           +     YT+ ++
Sbjct: 253 LSTTARYTQVSN 264


>gi|161729088|ref|NP_220744.2| site-specific tyrosine recombinase XerD [Rickettsia prowazekii str.
           Madrid E]
 gi|34223091|sp|Q9ZDG8|XERD_RICPR RecName: Full=Tyrosine recombinase xerD
 gi|292571969|gb|ADE29884.1| Tyrosine recombinase XerD [Rickettsia prowazekii Rp22]
          Length = 311

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 48/276 (17%), Positives = 98/276 (35%), Gaps = 38/276 (13%)

Query: 85  GSLAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
            +L+ NS +S++            +K  + +      +     + S      S  + +++
Sbjct: 15  RALSKNSILSYKRDLLDFQHYLAAQKISELNITTGNIRKWIEYLASNNLHARSINRKIST 74

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-----SEGSQPRL 194
           ++  + + + + +   NP L+++ PK + +     + + ++    +       EG +   
Sbjct: 75  IKSYYAFLISENHTKFNPVLNIDLPKYQNKLPIILSIDQIKLILEYCSKDNTPEGIRLNA 134

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNN---------IFSIKTQKTGTIITVELPDGFMKLL 245
               L  SGLR S+     +  +  N         IFS+  +     + V      + ++
Sbjct: 135 MINLLYASGLRVSELVSLKLADILTNNTSKGTVRKIFSVLGKGNKERVIVINDQAVLSII 194

Query: 246 AMTPIGKETFFINNDKQK--------------MNATQFSIWFKAKATKAGVN---KSAHG 288
               I    FFIN  K K              M    F+I  K+ A   G+N    S H 
Sbjct: 195 KYLEIRD--FFINKAKSKNLIYLFPSSAVAGYMTRQNFAILLKSVALYTGLNPEHVSPHI 252

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +R   A+   + GA    +    G   +   + YT 
Sbjct: 253 LRHSFASHLLEGGADLRVIQELLGHADISTTQIYTH 288


>gi|3860920|emb|CAA14820.1| INTEGRASE/RECOMBINASE XERD (xerD) [Rickettsia prowazekii]
          Length = 335

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 48/276 (17%), Positives = 98/276 (35%), Gaps = 38/276 (13%)

Query: 85  GSLAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
            +L+ NS +S++            +K  + +      +     + S      S  + +++
Sbjct: 39  RALSKNSILSYKRDLLDFQHYLAAQKISELNITTGNIRKWIEYLASNNLHARSINRKIST 98

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-----SEGSQPRL 194
           ++  + + + + +   NP L+++ PK + +     + + ++    +       EG +   
Sbjct: 99  IKSYYAFLISENHTKFNPVLNIDLPKYQNKLPIILSIDQIKLILEYCSKDNTPEGIRLNA 158

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNN---------IFSIKTQKTGTIITVELPDGFMKLL 245
               L  SGLR S+     +  +  N         IFS+  +     + V      + ++
Sbjct: 159 MINLLYASGLRVSELVSLKLADILTNNTSKGTVRKIFSVLGKGNKERVIVINDQAVLSII 218

Query: 246 AMTPIGKETFFINNDKQK--------------MNATQFSIWFKAKATKAGVN---KSAHG 288
               I    FFIN  K K              M    F+I  K+ A   G+N    S H 
Sbjct: 219 KYLEIRD--FFINKAKSKNLIYLFPSSAVAGYMTRQNFAILLKSVALYTGLNPEHVSPHI 276

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +R   A+   + GA    +    G   +   + YT 
Sbjct: 277 LRHSFASHLLEGGADLRVIQELLGHADISTTQIYTH 312


>gi|127511259|ref|YP_001092456.1| tyrosine recombinase XerC [Shewanella loihica PV-4]
 gi|126636554|gb|ABO22197.1| tyrosine recombinase XerC [Shewanella loihica PV-4]
          Length = 297

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 34/265 (12%), Positives = 95/265 (35%), Gaps = 19/265 (7%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVESRKHTPS 131
             Y  S     L+ ++  ++    +++     +     +      + + + +  +   P 
Sbjct: 10  VSYLVSER--QLSPHTVRNYRFELERVGELLPENFIWAEVSDEQLQAVLNKLHRKGLGPR 67

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR---PWTKEDMQQFKSFWSE 188
           S    L++++    + +++ Y+  +PCL++  PK++    +     +   +   +   + 
Sbjct: 68  SIALTLSALKQFCHYLLQEGYIKKDPCLNLSAPKQQKPLPKNMDLDSVTHLLSIEGDDAL 127

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELP-------DG 240
             + +   E    SGLR ++      + + +    +K    G+    V +        D 
Sbjct: 128 ALRDKAIMELFYSSGLRLAELAALDTRDIASGEHQVKVMGKGSKERIVPIGRMALSAIDD 187

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISA 298
           ++K+ ++ P   +  F+    +++                G+N     H +R   AT   
Sbjct: 188 WLKVRSLLPCEDDALFVTAKGKRLAHRSIQARLNKWGQLQGLNARVHPHKLRHSFATHML 247

Query: 299 DAGATAHELMATYGWKTVDQAETYT 323
           ++ A    +    G   +   + YT
Sbjct: 248 ESSADLRAVQELLGHANLSTTQVYT 272


>gi|319788011|ref|YP_004147486.1| tyrosine recombinase XerD [Pseudoxanthomonas suwonensis 11-1]
 gi|317466523|gb|ADV28255.1| tyrosine recombinase XerD [Pseudoxanthomonas suwonensis 11-1]
          Length = 326

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 42/269 (15%), Positives = 81/269 (30%), Gaps = 30/269 (11%)

Query: 85  GSLAVNSRISFESYFDQIIR-----KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
             LA  S  ++    + + R       G     +       +      + P S  +    
Sbjct: 40  RGLARASLDAYRRDLELLARWRDGTGGGLVGADREALFGYLAWRAGHGYGPRSNARLRAC 99

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195
           +R  +   V       +P   ++ P+      +  ++  ++           EG + R  
Sbjct: 100 LRAFYAHLVLAGVRQDDPAALIDPPRMPRPLPKAMSESQVEALLGVPDVSIPEGLRDRAM 159

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDGFMKLL--------- 245
            E +  +GLR S+        +      ++ +  G+    V L +     L         
Sbjct: 160 LELMYAAGLRVSELVNLPANAVNLRQGVVRVRGKGSKERLVPLGEESQDWLERYLRESRP 219

Query: 246 --------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSA 294
                        G+   FI   +       F    K  A  AG++    + HG+R   A
Sbjct: 220 ALTGGRPVPADASGEVPLFIGASRSAPTRQDFWRAIKRHAAAAGIDPRTVTPHGLRHSFA 279

Query: 295 TISADAGATAHELMATYGWKTVDQAETYT 323
           T   + GA    L    G  ++   + YT
Sbjct: 280 THLLNHGADLRALQLLLGHASLSTTQIYT 308


>gi|269302896|gb|ACZ32996.1| putative tyrosine recombinase XerC [Chlamydophila pneumoniae
           LPCoLN]
          Length = 312

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 46/283 (16%), Positives = 103/283 (36%), Gaps = 29/283 (10%)

Query: 66  KKPTTLKWLISEYRKSAHW----GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR- 120
             P TL+    +      +    G+LA +S +   +      RK  +  +   T +H+R 
Sbjct: 18  ASPHTLRNYCLDLNGLKIFLEERGNLAPSSPLQLATE----KRKVSELPFSLFTKEHVRM 73

Query: 121 --SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
             + +        +  + L+S++    + V Q+ +  NP  ++  P+   E   P T   
Sbjct: 74  YIAKLIENGKAKRTIKRCLSSIKSFAHYCVVQKILLENPAETIHGPRLPKELPSPMTYAQ 133

Query: 179 MQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTI 232
           ++   +        G + R   E    SGLR S+      Q      ++  I+  K    
Sbjct: 134 VEVLMATPDISKYHGLRDRCLMELFYSSGLRISEIVAVNKQDFDLSTHLIRIR-GKGKKE 192

Query: 233 ITVELPDGFMKLL---------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV- 282
             + +    ++ +                +  F+N   ++++       F+    ++G+ 
Sbjct: 193 RIIPVTSNAIQWIQTYLNHPDRKRLEKDPQAIFLNRFGRRISTRSIDRSFQEYLRRSGLS 252

Query: 283 -NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            + + H +R   AT   ++G     + A  G  +++    YT+
Sbjct: 253 GHITPHTIRHTIATHWLESGMDLKTIQALLGHSSLETTTVYTQ 295


>gi|317129457|ref|YP_004095739.1| integrase family protein [Bacillus cellulosilyticus DSM 2522]
 gi|315474405|gb|ADU31008.1| integrase family protein [Bacillus cellulosilyticus DSM 2522]
          Length = 391

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 56/387 (14%), Positives = 118/387 (30%), Gaps = 62/387 (16%)

Query: 18  HGKIIYYFRKG-----HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
            G   +           G+RI+      +         L     + E            K
Sbjct: 8   RGNNRWRLEVSLGVDQDGKRIKKRKTITAKNKTEAKKRLAEFVTEIEAGEYIDPSKMKFK 67

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE------S 125
             + E+        L   +  +++S  +  +I   G+    +    +I + ++      +
Sbjct: 68  DFVKEWETKYGMKHLGAKTLETYKSIINNYLIPTFGNKKLDEFKPINIINYLDCLGEDNA 127

Query: 126 RKHTP------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED- 178
           RK         SS       +R +F  A     +  NP  SV+ PK   E    +TK++ 
Sbjct: 128 RKDGKEGGLSSSSIKYHYRVLRNIFSRAKEWIIIKNNPVESVKPPKVTQEKTSVYTKDEV 187

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-------------- 224
           ++  +   +E    +L     L +GLR  +        +  +  +I              
Sbjct: 188 IELLELLKNEPIHQKLMVTAALMAGLRRGEILGLQWDDIDLDAGTISINHSLQYTKEKGY 247

Query: 225 ---KTQKTGTIITVELPDGFMKLLAMTPIGKE----------------TFFINNDKQKMN 265
                +   +I  V +P   ++        K                   F + + +   
Sbjct: 248 VLGPPKNNSSIRKVSIPMYLVEEFKKYKRTKSKERIQAAELWEGGKYFYVFSSWNGKPFY 307

Query: 266 ATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA----E 320
            T    W++    + G      H +R  +AT+  + G  A  + A  G   +        
Sbjct: 308 PTAVGTWWRRFLKRKGFKYIRFHDLRHTAATLLINEGEHAKTISARLGHADIKTTMNIYG 367

Query: 321 TYTKGADRIRLGIKNSRRISSVVDSDD 347
            Y + AD        + +++S+  + +
Sbjct: 368 HYLREADEK-----AANKLNSIFGNTN 389


>gi|229916013|ref|YP_002884659.1| integrase family protein [Exiguobacterium sp. AT1b]
 gi|229467442|gb|ACQ69214.1| integrase family protein [Exiguobacterium sp. AT1b]
          Length = 337

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 46/311 (14%), Positives = 94/311 (30%), Gaps = 44/311 (14%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISF-ESYFDQII------------RKSGDFDYRKITTK 117
           L   I ++         +  +   +     D                      + +I   
Sbjct: 27  LPAFIQQFFHHLAAKHYSKQTAQRYVYDVLDFFRWVELVSGTELEPETIDLPSFTEIDHA 86

Query: 118 HIRSGV----ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
              +         ++ PS   + L++++ LF + +      +NP  +VERPKR       
Sbjct: 87  GAEAYATYLALELENAPSVINRKLSTLQSLFNYLIETNQATVNPFQTVERPKRGKRNPVY 146

Query: 174 WTKEDMQQF-------------KSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQ 218
            T+ +   F             ++ W E ++ R  L  + L  +G+R S+        + 
Sbjct: 147 LTESEWLDFSTLVRSNVGMTNREASWYEMNRARDFLIIQLLGLTGMRVSELVGLNWSDIN 206

Query: 219 NNIFSIKT-QKTGTIITVELPDGFMKLL--AMTPIGKETFFINNDKQKMNATQFSIWFKA 275
               +I+   K      + +    + LL        +   F N   Q++         K 
Sbjct: 207 LETGTIRVIGKGDKERLIPIAGPLLPLLSEYRHTSSEGAVFQNEKGQRIAVRTVQHMLKG 266

Query: 276 KATKAGV--------NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
              +             + H +R   A+  A  G     +    G ++V   + Y    D
Sbjct: 267 HIDRLKPYLPFLSHKQVTPHKLRHTFASRLAMGGVDVLTIQQLLGHESVATTQVYAHIGD 326

Query: 328 -RIRLGIKNSR 337
            R +  I   +
Sbjct: 327 ERKKHAISGLQ 337


>gi|289434561|ref|YP_003464433.1| integrase/recombinase XerC [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289170805|emb|CBH27347.1| integrase/recombinase XerC [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
          Length = 300

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 39/281 (13%), Positives = 99/281 (35%), Gaps = 27/281 (9%)

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK------ITTKHIRSG 122
              + L  +Y  S    + + N+  ++E+      R   +    +      +  +   + 
Sbjct: 5   GKWEQLFLDYLHSER--NYSENTSTAYENDLIDFRRFLNEQAITEYNQVTFLDVRIYLTE 62

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ- 181
           ++ +  + ++  + ++S+R  + + +R+  +  NP   V   K +    + +  E+M+  
Sbjct: 63  LKQKSFSRTTVARKISSLRSFYTFLLRENVITENPFTYVSHAKNQLRLPKFFYSEEMEAL 122

Query: 182 ----FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVE 236
               ++   +   + R+  E L  +G+R S+     +  +     +I    K      V 
Sbjct: 123 FQVVYEDNETLTLRDRVLLEVLYGTGIRVSECAGILLTDIDKTYQAILIRGKGNKERYVP 182

Query: 237 L-----------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS 285
                        D  ++L+       ++  IN+    +             +KA + + 
Sbjct: 183 FGAYAEDAITDYLDSRIELMKHFNKTHDSLLINHYGDPLTTRGIRYCLTKIISKASLTRK 242

Query: 286 --AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              H +R   AT   + GA    +    G  ++   + YT 
Sbjct: 243 IHPHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTH 283


>gi|182680307|ref|YP_001834453.1| integrase family protein [Beijerinckia indica subsp. indica ATCC
           9039]
 gi|182636190|gb|ACB96964.1| integrase family protein [Beijerinckia indica subsp. indica ATCC
           9039]
          Length = 325

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 50/294 (17%), Positives = 99/294 (33%), Gaps = 35/294 (11%)

Query: 74  LISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVESRK 127
           LI  +          A N+  ++        +   D      D      +H    +E++ 
Sbjct: 9   LIEAFLDMIGAERGAARNTLEAYGRDLTDYAQALADRGRSLLDATSEDIRHYLGDLETQG 68

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-- 185
             PSS+ + L+++R   ++   + + + +P L +E P+R     +  T  ++++  +   
Sbjct: 69  LKPSSSARRLSAIRQFHRFLASESHRSDDPALILEGPRRSRGLPKTLTMAEVERLLTVSK 128

Query: 186 -------WSEGSQPRLA-----FEFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGTI 232
                     G + R A      E L  +GLR S+        ++  +       K G  
Sbjct: 129 EGLEDPARPLGERVRAARTACLLELLYATGLRVSELVSLPDSAMRGADPLITIRGKGGRE 188

Query: 233 ITVELPDGFMKLLA-----------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281
             V LP    + +                G   F  +++   ++   F+   K  A  AG
Sbjct: 189 RLVPLPPVARRAITFYRDLLHQKHLGLSKGGWLFPADSETGYLSRQAFARDLKVVAAAAG 248

Query: 282 VNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           ++    S H +R   A+     GA    +    G   +   + YT   D     
Sbjct: 249 IDTARISPHVLRHAFASHLLQNGADLRIVQELLGHADIATTQIYTHVLDERMKA 302


>gi|317153308|ref|YP_004121356.1| integrase family protein [Desulfovibrio aespoeensis Aspo-2]
 gi|316943559|gb|ADU62610.1| integrase family protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 304

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 44/285 (15%), Positives = 86/285 (30%), Gaps = 28/285 (9%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD---------YRKITTKHIRS 121
           L      +  S      +  +  ++      + R +                +       
Sbjct: 10  LAGATEAFCASLSAEGRSPATIAAYRRDLALLARVAEKLAAGIICREITPGLLDQVFSSE 69

Query: 122 GVESRKHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
            V   +  P SA    +   ++R  F WA+    V  NP  S+   +   +     T  +
Sbjct: 70  AVADSERGPRSAASLHRMKAALRAFFAWAIDVGIVDDNPARSIRMHRLPRKLPVFLTVGE 129

Query: 179 MQQFKSFWSEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTI 232
            ++        +     + R   E LL +G+R  +     +  +  +   ++   K    
Sbjct: 130 KKRLLKELKGRTDFPAFRDRAMIEVLLGTGIRLGELAALDMDDIDLDAKHLRVWAKGNVP 189

Query: 233 ITVELPDGFMKLLAMTPIGK--------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284
               +      LL      +        E  F++N   ++   Q +        KAG+ K
Sbjct: 190 QVKFIKTDLRTLLRRYLAERRRRGRPEMEALFLSNRDSRLCQRQIANRLAHWLRKAGIEK 249

Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
             + HG+R   AT    A      +    G + V   + YT   D
Sbjct: 250 ELTPHGMRHTFATHLYGATNDLLVVQRALGHRDVSTTQIYTHLVD 294


>gi|254561653|ref|YP_003068748.1| tyrosine recombinase xerD [Methylobacterium extorquens DM4]
 gi|254268931|emb|CAX24892.1| Tyrosine recombinase xerD [Methylobacterium extorquens DM4]
          Length = 328

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 44/273 (16%), Positives = 86/273 (31%), Gaps = 28/273 (10%)

Query: 85  GSLAVNSRISFESYFDQIIRK-----SGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
              A N+  ++    D  +           + +    +   + +E R    SSA + L+ 
Sbjct: 27  RGAAANTLAAYRRDLDDYLGYLAQGGIDPEEAQADQVRAYIASLEPRGLKASSAARRLSC 86

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF--------------KSF 185
           +R   ++   + Y   +P   V  P+R     +  +  ++ +               ++ 
Sbjct: 87  IRGFHRFLYAEGYSETDPTAPVAAPRRAKGLPKVLSVAEVDRLLATARERVEAAGDDRAE 146

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKL 244
               ++     E L  +GLR S+              + +   K G    V L D   + 
Sbjct: 147 ARSAARMLCLLELLYATGLRVSELVALPRSAAATRERYLVVKGKGGRERLVPLTDLAREA 206

Query: 245 LAM-----TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATI 296
           +       T  G   F   ++   +    F+   K  A  AG+     S H +R   A+ 
Sbjct: 207 MRTHVAYLTAEGAWLFPAESESGHLTRQAFARDLKTAAAAAGLRTDRVSPHVLRHAFASH 266

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRI 329
               GA    +    G   +   + YT   D  
Sbjct: 267 LLQNGADLRIVQELLGHADISTTQIYTHVLDER 299


>gi|182418976|ref|ZP_02950232.1| tyrosine recombinase XerC [Clostridium butyricum 5521]
 gi|237668918|ref|ZP_04528902.1| tyrosine recombinase XerC [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182377259|gb|EDT74827.1| tyrosine recombinase XerC [Clostridium butyricum 5521]
 gi|237657266|gb|EEP54822.1| tyrosine recombinase XerC [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 334

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 43/263 (16%), Positives = 96/263 (36%), Gaps = 15/263 (5%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSS 132
           I  Y +     + +  +  ++     +      +     IT   IR  +     +  PS+
Sbjct: 58  ILLYLQVRKLENYSQATLSNYMYTLRKF-ASFINKPVGTITKNDIRYYMAINFTELKPST 116

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
               +   +  F+W  ++E +  NP  S++  +      +  T E++++ +    +  + 
Sbjct: 117 VNNKIACFKAFFQWLEQEEMIPKNPARSLDETRLPKRLRKSLTAEELERVRIACVDN-RD 175

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLA----- 246
           R   EFL+ +G R S+     ++ L  N  ++K   K     TV   D     +      
Sbjct: 176 RALVEFLVATGCRVSEVVSCNIKDLDLNDNTLKVIGKGDKERTVCFTDKAKLYIRKYIEE 235

Query: 247 -MTPIGKETFFINN--DKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAG 301
                 ++  F++      +++     +       +A + K    H +R   AT+S  +G
Sbjct: 236 DRQKDNEDALFVSTKFPYNRISRRSIEVAISKIGIRANLGKPLFPHLLRHTMATLSLQSG 295

Query: 302 ATAHELMATYGWKTVDQAETYTK 324
           A    + +  G  T    + Y +
Sbjct: 296 ADITIIQSLLGHTTPSTTQIYAE 318


>gi|208703309|ref|YP_002267578.1| integrase/recombinase [Bacillus cereus H3081.97]
 gi|208658164|gb|ACI30531.1| integrase/recombinase [Bacillus cereus H3081.97]
          Length = 319

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 44/291 (15%), Positives = 93/291 (31%), Gaps = 32/291 (10%)

Query: 78  YRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---TPSS- 132
           Y+KS + +      +  ++ESY+    +  GD     +     R  +   K     P S 
Sbjct: 24  YKKSINYFIRWFEETHANYESYYTTFDKAVGDITLDHLIK--YREYLFETKSVTGKPYSL 81

Query: 133 --AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW-TKEDMQQFKSFWSE- 188
                 +  ++  F +   +  +  NP  + +  +   E    W T ++  +   +  + 
Sbjct: 82  ETIRLRVNCVKDFFSYLYEENVIESNPAKNFKNVRYVKESQVRWLTHDEKNRLLRYVEDP 141

Query: 189 ---------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239
                    G +       +L +GLR S+     ++ L N    I++ K      + +  
Sbjct: 142 KLIIKNEWRGYRNLAIINIMLLAGLRASEVSNLKLEDLDNGFILIRSSKGLKGRKLPINH 201

Query: 240 GFMKLL---------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGV 289
              K+L                +  F++    K      +  F     K G+   S H +
Sbjct: 202 DLGKVLNKWLNVRNEKEQFSDSQYVFLSQRGSKFTEMGLTKLFITLEKKTGIEGLSPHTL 261

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
           R        + G   H +    G  +V     Y   ++  +       ++S
Sbjct: 262 RHTFCHDLVEKGTPIHIIADYAGHSSVKTTMIYVTSSNMEKK--TAVEKLS 310


>gi|171742561|ref|ZP_02918368.1| hypothetical protein BIFDEN_01674 [Bifidobacterium dentium ATCC
           27678]
 gi|283456353|ref|YP_003360917.1| Integrase/recombinase [Bifidobacterium dentium Bd1]
 gi|306822472|ref|ZP_07455850.1| tyrosine recombinase XerD [Bifidobacterium dentium ATCC 27679]
 gi|309801397|ref|ZP_07695524.1| site-specific tyrosine recombinase XerC [Bifidobacterium dentium
           JCVIHMP022]
 gi|171278175|gb|EDT45836.1| hypothetical protein BIFDEN_01674 [Bifidobacterium dentium ATCC
           27678]
 gi|283102987|gb|ADB10093.1| Integrase/recombinase [Bifidobacterium dentium Bd1]
 gi|304554017|gb|EFM41926.1| tyrosine recombinase XerD [Bifidobacterium dentium ATCC 27679]
 gi|308221912|gb|EFO78197.1| site-specific tyrosine recombinase XerC [Bifidobacterium dentium
           JCVIHMP022]
          Length = 306

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 52/289 (17%), Positives = 99/289 (34%), Gaps = 39/289 (13%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGVE-- 124
           T+      Y K      L+ N+R ++    ++    +   G  D  ++T + +R  +   
Sbjct: 6   TIDAF-DAYLK--ANRGLSDNTRKAYRGDLEECMTQLEILGCEDLNEVTIEDLRMWMSQS 62

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
           S++H  SS  +   ++R  F W   +     NP   +  PK         ++   ++   
Sbjct: 63  SKRHARSSMARKTVAVRGFFAWTHERGVTNANPAAMLMTPKIPDTLPAVLSESQAEKLMD 122

Query: 185 FWSE---------------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQK 228
              E               G +     E L  +G+R ++     V  +  +N     T K
Sbjct: 123 CVDEQMPKSRTKSVRKQAVGLRNAAMLEVLYATGIRVAELVGLDVHDVAFDNRTMKVTGK 182

Query: 229 TGTIITVE------------LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK 276
                 V             L DG  +L+       +  F+     +++           
Sbjct: 183 GNKQRVVPFGVPAEQSIRRWLEDGRPRLVRA--RSADALFLGAQGNRIDQRVVRQVVHEC 240

Query: 277 ATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           A +AGV + S H +R  +AT   D GA   ++    G  ++   + YT 
Sbjct: 241 AQRAGVPDISPHALRHSAATHLLDGGADLRQVQELLGHSSLKTTQRYTH 289


>gi|153930897|ref|YP_001385278.1| phage integrase family integrase/recombinase [Clostridium botulinum
           A str. ATCC 19397]
 gi|152926941|gb|ABS32441.1| integrase/recombinase, phage integrase family [Clostridium
           botulinum A str. ATCC 19397]
          Length = 331

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 50/261 (19%), Positives = 91/261 (34%), Gaps = 13/261 (4%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-KH-TPSS 132
           IS Y  +     L++ +  +++     I           I    +R  +  R KH   SS
Sbjct: 59  ISIYLAAKKLDGLSLKTLKNYKYNL-AIFADYLRKPLATINAMDLRMFLAQRCKHMKASS 117

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
               ++ ++  F W   +EY+  NP L +++ K+         +E+++  +    E  + 
Sbjct: 118 VNGQISILKSFFGWLHMEEYIPKNPSLKLKQTKQPKRVRHALNEEEIEILRQAC-ETDRE 176

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELP----DGFMKLLAM 247
           +   EFL+ +G R S+        +  N  S     K      V           K L  
Sbjct: 177 KALIEFLISTGCRLSEVIGVNKTDIDWNEMSLFVIGKGDKERKVYFNTKAKILLKKYLLT 236

Query: 248 TPIGKETFFINNDKQKMNATQFSIW--FKAKATKAGVNKS--AHGVRKFSATISADAGAT 303
                   F+ + K        SI    K  A +A ++KS   H  R   AT   ++G  
Sbjct: 237 RSDENIALFVTSKKPHNRLGGRSIQREIKNIAIRAKIDKSIYPHLFRHSFATHKLNSGMP 296

Query: 304 AHELMATYGWKTVDQAETYTK 324
              +    G +     + Y +
Sbjct: 297 LPVIQHLMGHENPSTTQVYAE 317


>gi|312869134|ref|ZP_07729308.1| phage integrase, N-terminal SAM domain protein [Lactobacillus oris
           PB013-T2-3]
 gi|311095380|gb|EFQ53650.1| phage integrase, N-terminal SAM domain protein [Lactobacillus oris
           PB013-T2-3]
          Length = 295

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 45/275 (16%), Positives = 103/275 (37%), Gaps = 24/275 (8%)

Query: 74  LISEYRKS-AHWGSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGVESRK-- 127
           L+ +Y          + N+ +S+    D     ++  G   +  +    + + +  +K  
Sbjct: 4   LVDKYLAYLKGSQGRSANTLMSYRRDLDQAAAFLQAQGVGKWSAVDQYQLLALIAEQKKR 63

Query: 128 -HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE-GIRPWTKEDMQQFKS- 184
             +P++  + L+++R  +++ VR + +  NP   V+  +   +      T+ +++Q  + 
Sbjct: 64  GRSPATINRQLSALRQFYRYLVRHQQLRFNPMELVDNQQLTEKLPPEILTEPEIKQLLAA 123

Query: 185 ---FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-ITVELPD- 239
                + G + R     L  +G+R S+     V  L  +I  I+    G     V + D 
Sbjct: 124 PDQAHALGKRDRALLAVLATTGMRVSELVDLLVTDLHLDIKMIRLGSGGRRERLVPISDQ 183

Query: 240 ---GFMKLLAM-----TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289
                 + LA         G++  F+N    ++         +    +AG+ K  +   +
Sbjct: 184 AVQELKQYLAAVRPLLVAEGEQAVFVNAHGHQLTRQGVWKNLRTLVRQAGIEKAVTPRTL 243

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           R   A     +GA    +    G+  +   + Y K
Sbjct: 244 RYSFAVHLLRSGADGRLIQEMLGYSELRAIKPYLK 278


>gi|254670992|emb|CBA07733.1| site-specific recombinase [Neisseria meningitidis alpha153]
          Length = 305

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 36/278 (12%), Positives = 85/278 (30%), Gaps = 24/278 (8%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD-------YRKITTKHIRSGV 123
                  Y ++      + ++  ++    +++                + ++ +   + +
Sbjct: 6   FAAHFDAYLENIVREGKSEHTVAAYRRDLEELFALLAQMPSEAEGGVPQGLSQRDFTAAL 65

Query: 124 ES---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                R     +  + L+S R    W V++  +  +P   ++ PK+     +   +E + 
Sbjct: 66  RRLSQRGLNARTLARKLSSWRQYCAWLVKRGLMRADPTADIKPPKQPERVPKALPQEWLN 125

Query: 181 QFKSF-----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIIT 234
           +              +    FE +  SGLR S+        +  +   +     G     
Sbjct: 126 RMLDLPVDGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGKGRKQRQ 185

Query: 235 VELP----DGFMKL--LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK--AGVNKSA 286
           V L     +       L  T    +  F   +  +++  Q        A +   G + S 
Sbjct: 186 VPLTGKSVEALKNYLPLRQTASDGKALFTGRNGTRLSQRQIQKRLAQWAAQNGDGRHVSP 245

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           H +R   A     A      +    G  ++   + YTK
Sbjct: 246 HMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTK 283


>gi|260186653|ref|ZP_05764127.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           CPHL_A]
 gi|289447315|ref|ZP_06437059.1| integrase [Mycobacterium tuberculosis CPHL_A]
 gi|289420273|gb|EFD17474.1| integrase [Mycobacterium tuberculosis CPHL_A]
          Length = 311

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 44/274 (16%), Positives = 87/274 (31%), Gaps = 35/274 (12%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH----IRSGVESRKHTPSS-------- 132
             +A N+  S+     +  +   +     +            V  R+  P S        
Sbjct: 19  RGVAANTLSSYRRDLRRYSKHLEERGITDLAKVGEHDVSEFLVALRRGDPDSGTAALSAV 78

Query: 133 -AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----- 186
            A + L ++R L ++A  +  V ++   +V  P       +  T +++            
Sbjct: 79  SAARALIAVRGLHRFAAAEGLVELDVARAVRPPTPSRRLPKSLTIDEVLSLLEGAGGDKP 138

Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFM 242
                  + R   E L  +G R S++    +  +  +    +   K G    V +    +
Sbjct: 139 SDGPLTLRNRAVLELLYSTGARISEAVGLDLDDIDTHARSVLLRGKGGKQRLVPVGRPAV 198

Query: 243 KLL-----------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289
             L           A    G    F+N    +++        +  A +AG+    S H +
Sbjct: 199 HALDAYLVRGRPDLARRGRGTAAIFLNARGGRLSRQSAWQVLQDAAERAGITAGVSPHML 258

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           R   AT   + GA    +    G  +V   + YT
Sbjct: 259 RHSFATHLLEGGADVRVVQELLGHASVTTTQIYT 292


>gi|228915207|ref|ZP_04078802.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|228844438|gb|EEM89494.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
          Length = 369

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 49/312 (15%), Positives = 109/312 (34%), Gaps = 38/312 (12%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE 124
               TLK  ++ + +     S+  ++ + + +  +  +I   G     K+   HI+   +
Sbjct: 60  PSKVTLKEYLNHWLEIKS-MSIESSTFVVYRACINQHVIPSIGMITLHKLNVMHIQKCYK 118

Query: 125 SRKHTPSSAIQFLTSMRVL---FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
           +  +   +    L   R+L      AV+Q  +  NP    E PK++   I+ WT+E++++
Sbjct: 119 TAINKGIANNSILLMHRILKSALNLAVKQNIITRNPSAFAEIPKKERTSIQTWTEEEVKK 178

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--------------NNIFSIKTQ 227
           F    S+ S+  + +   + +G+R  +      Q +               +N      +
Sbjct: 179 FL-LHSQESRYHIGYLLAITTGMRMGEVLGLRWQDVDFEKHTVTINQTSGHDNKIKKTAK 237

Query: 228 KTGTIITVELPDGFMKLLAMTPI--------------GKETFFINNDKQKMNATQFSIWF 273
              +  T+ +P   ++ L    I               ++    N   + +    F   F
Sbjct: 238 TNSSKRTIPVPKETIESLKRHKILINKEKLRFGSAYQDQDLINCNEFGKIIKKAHFRKCF 297

Query: 274 KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRL 331
             +  KAG+ +   H +R   ATI    G     +    G   +      Y+       +
Sbjct: 298 IRETHKAGIKEIKFHDLRHTHATILLKQGVNPKIISERLGHTDISMTLSVYSHVL--PNM 355

Query: 332 GIKNSRRISSVV 343
             +  +     +
Sbjct: 356 QEEAVKNFGKSI 367


>gi|145224084|ref|YP_001134762.1| site-specific tyrosine recombinase XerD [Mycobacterium gilvum
           PYR-GCK]
 gi|145216570|gb|ABP45974.1| tyrosine recombinase XerD [Mycobacterium gilvum PYR-GCK]
          Length = 314

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 45/274 (16%), Positives = 91/274 (33%), Gaps = 35/274 (12%)

Query: 85  GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKH----------TPS 131
             +A N+  S+     +        G  D   +T   +   + + +           +  
Sbjct: 22  RGVAANTLSSYRRDLRRYAEHLKARGVGDLAAVTETDVSEFLVALRLGDPDGGVVPLSAV 81

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF--------K 183
           SA + L ++R L ++A  +   AI+    V+ P       +  + +++           +
Sbjct: 82  SAARALIAVRGLHRFAAAEGIAAIDVARDVKPPTPSRRLPKSLSIDEVLALLEAAGGDSE 141

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFM 242
           +      + R   E L  +G R S++    +  +  +    +   K G    + +    +
Sbjct: 142 ADSPLTLRNRALLELLYSTGARISEAVGLDIDDVDTSARSVLLRGKGGKQRLIPIGRPAV 201

Query: 243 KLL-----------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289
             L           A    G    F+N    +++        +  A +AGV    S H +
Sbjct: 202 TALETYLVRGRPDLARRGRGTPAIFLNARGGRLSRQSAWQVLQDAAGRAGVTATVSPHVL 261

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           R   AT   D GA    +    G  +V   + YT
Sbjct: 262 RHSFATHLLDGGADVRVVQELLGHASVTTTQIYT 295


>gi|148210|gb|AAA67607.1| unknown [Escherichia coli str. K-12 substr. MG1655]
          Length = 298

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 41/270 (15%), Positives = 89/270 (32%), Gaps = 20/270 (7%)

Query: 75  ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRK 127
           +  Y +       L+  + ++++   + II  + +   +          ++       + 
Sbjct: 8   VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKG 67

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186
              +S    L+++R  F W V Q  +  NP   V  PK      +    +DM +      
Sbjct: 68  LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDIDI 127

Query: 187 --SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT--------IITVE 236
                 + R   E +  +GLR S+     ++HL      +     G+           V 
Sbjct: 128 NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRKPVA 187

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSA 294
             + ++ L  +     +  F++   ++ +A      F     K G+N     H +    A
Sbjct: 188 WIEHWLDLRDLFGSEDDALFLSKLGKRXSARNVQKRFAEWGIKQGLNNHVHPHKLXHSFA 247

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324
           T   ++      +    G   +   + YT 
Sbjct: 248 THMLESSGDLRGVQELLGHANLSTTQIYTH 277


>gi|260774849|ref|ZP_05883751.1| tyrosine recombinase XerC [Vibrio coralliilyticus ATCC BAA-450]
 gi|260609274|gb|EEX35429.1| tyrosine recombinase XerC [Vibrio coralliilyticus ATCC BAA-450]
          Length = 309

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 41/277 (14%), Positives = 95/277 (34%), Gaps = 23/277 (8%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGV---ESRKHTP 130
           EY +S     L+++++ +++   + + +     G  D+ ++    +R             
Sbjct: 21  EYLRSE--KGLSLHTQRNYKQQLETMAQHLVTMGLKDWSQVDAAWVRQLASKGMRDGMKA 78

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WS 187
           SS    L+++R  F + + +  +  NP   V  P++K    +    +++ Q         
Sbjct: 79  SSLATRLSALRSFFDFLILRGELTANPAKGVSAPRKKRPLPKNLDVDEVGQLLEVNEDDP 138

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE--------LP 238
              + R   E +  +GLR ++     V+ +  +   I+   K      V         + 
Sbjct: 139 LAIRDRAMMELMYGAGLRLAEMVSVDVRDVSLSSGEIRVVGKGDKERKVPFAGMAEEWVA 198

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATI 296
                  A+    +   F++    +++             K  V  + S H +R   AT 
Sbjct: 199 KWLKVRGALANTDEPALFVSKLGVRISHRNVQKRMAEWGQKQSVASHISPHKLRHSFATH 258

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
             ++      +    G + +   + YT   D   L  
Sbjct: 259 MLESSNNLRAVQELLGHENISTTQIYTH-LDFQHLAD 294


>gi|254804308|ref|YP_003082529.1| site-specific recombinase [Neisseria meningitidis alpha14]
 gi|254667850|emb|CBA03883.1| site-specific recombinase [Neisseria meningitidis alpha14]
          Length = 305

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 36/278 (12%), Positives = 84/278 (30%), Gaps = 24/278 (8%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD-------YRKITTKHIRSGV 123
                  Y ++      + ++  ++    +++                + ++ +   + +
Sbjct: 6   FAAHFDAYLENIVREGKSEHTVAAYRRDLEELFALLAQMPSEDAGGVPQDLSRRDFTAAL 65

Query: 124 ES---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                R     +  + L+S R    W V +  +  +P   ++ PK+     +   +E + 
Sbjct: 66  RRLSQRGLNARTLARKLSSWRQYCVWLVERGLLHTDPTADIKPPKQPERVPKALPQEWLN 125

Query: 181 QFKSF-----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIIT 234
           +              +    FE +  SGLR S+        +  +   +     G     
Sbjct: 126 RMLDLPVDGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGKGRKQRQ 185

Query: 235 VEL----PDGFMKL--LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK--AGVNKSA 286
           V L     +       L  T    +  F   +  +++  Q        A +   G + S 
Sbjct: 186 VPLVGKSVEALKNYLPLRQTASDGKALFTGRNGTRLSQRQIQKRLAQWAAQNGDGRHVSP 245

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           H +R   A     A      +    G  ++   + YTK
Sbjct: 246 HMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTK 283


>gi|90581049|ref|ZP_01236849.1| tyrosine recombinase [Vibrio angustum S14]
 gi|90437745|gb|EAS62936.1| tyrosine recombinase [Vibrio angustum S14]
          Length = 301

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 36/278 (12%), Positives = 88/278 (31%), Gaps = 21/278 (7%)

Query: 68  PTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV--- 123
           P TL+  +  + +       L+++++ +++    ++  +  +                  
Sbjct: 3   PRTLEQPLERFYEYLRSERELSLHTQQNYKRQLTRVAEQLVELSVDNWQQVDAGWVRQIA 62

Query: 124 ---ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                     SS    L+++R  F + V Q  +  NP   V  P++     +    ++M 
Sbjct: 63  SKGMRDGLKASSLAMRLSALRSFFDFLVHQNVLKANPAKGVAAPRKARPLPKNLDVDEMN 122

Query: 181 QFKSF---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-- 235
           Q            + R   E +  +GLR ++     V+H+  +   ++    G    V  
Sbjct: 123 QLLDVNDDDPLAIRDRAMMELMYGAGLRLAELVGIDVRHISLSKGDLRVIGKGDKERVVP 182

Query: 236 -------ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286
                   +         +    +   F++    +++             K  V  + + 
Sbjct: 183 FSGLAREWIAKWLKLRDNIAQAEEPALFVSKLGTRISTRNVQKRMAEWGQKQAVSSHINP 242

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           H +R   AT   ++      +    G   +   + YT 
Sbjct: 243 HKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTH 280


>gi|86159117|ref|YP_465902.1| tyrosine recombinase XerC [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85775628|gb|ABC82465.1| Tyrosine recombinase XerC [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 342

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 53/302 (17%), Positives = 99/302 (32%), Gaps = 31/302 (10%)

Query: 59  EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITT 116
               +P + P  L+     Y  S      + ++R +++    Q      D        + 
Sbjct: 3   PDAAAPTELPEELRRF-DAYLASE--KRASPHTRKAYQVDLAQYAAYLADQGQPLVPSSP 59

Query: 117 KHIRSGVESRKHTPSSAI--QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
             +R  +  +     +    + L+++R L+++ VR+     NP  +V  PKR        
Sbjct: 60  ALVRGFLARQAGAAGAVSLGRKLSALRSLYRFLVREGLAPGNPARAVASPKRPKRLPEVL 119

Query: 175 TKEDMQQFKS------FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-Q 227
            +E++                 + R   E L  SGLR S+     ++ L      ++   
Sbjct: 120 PEEEVAALVETPDAAGEAPLALRDRAFLELLYGSGLRVSELTGLDLEDLDLAGGLVRVLG 179

Query: 228 KTGTIITVEL-----------PDGFMKLLAMTPI---GKETFFINNDKQKMNATQFSIWF 273
           K      V              DG   +LA  P      E  F+N    ++ +   +   
Sbjct: 180 KRNKERIVPFGAPAAEALRRYLDGARPVLAAGPDHAGAAEAVFLNFRGGRLTSRSVARRL 239

Query: 274 KAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
                 +G+ +    H +R   AT     GA    +    G  ++   + YT   D  RL
Sbjct: 240 DGWVLASGLPRHVHPHVLRHCFATHLLGNGADLRGIQELLGHASLSTTQRYTH-LDWKRL 298

Query: 332 GI 333
             
Sbjct: 299 AA 300


>gi|27364549|ref|NP_760077.1| site-specific tyrosine recombinase XerC [Vibrio vulnificus CMCP6]
 gi|320154951|ref|YP_004187330.1| tyrosine recombinase XerC [Vibrio vulnificus MO6-24/O]
 gi|34222789|sp|Q7ZAI9|XERC_VIBVU RecName: Full=Tyrosine recombinase xerC
 gi|71153412|sp|Q7MQB9|XERC_VIBVY RecName: Full=Tyrosine recombinase xerC
 gi|27360668|gb|AAO09604.1| tyrosine recombinase XerC [Vibrio vulnificus CMCP6]
 gi|319930263|gb|ADV85127.1| tyrosine recombinase XerC [Vibrio vulnificus MO6-24/O]
          Length = 316

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 34/280 (12%), Positives = 86/280 (30%), Gaps = 22/280 (7%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV------ESRK 127
           + ++ +       L+++++ +++   + +         +                     
Sbjct: 17  LDQFYEYLRAEKGLSLHTQRNYKQQLETMAEHLHSMGLKAWPQVDAGWVRQLAGKGMREG 76

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-- 185
              SS    L+S+R  F + + +  +  NP   V  P++K    +    +++ Q      
Sbjct: 77  MKASSIATRLSSLRSFFDFLILRGILTANPAKGVSAPRKKRPLPKNLDVDEVNQLLEVNE 136

Query: 186 -WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE------- 236
                 + R   E +  +GLR ++     V+ +      I+   K      V        
Sbjct: 137 DDPLAIRDRAIMELMYGAGLRLAELVDIDVRDVHLRSGEIRVIGKGNKERKVPFAGMAVE 196

Query: 237 -LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293
            +         +    +   F++    +++             K  V  + + H +R   
Sbjct: 197 WVGKWLKVRSGLADPSEPALFVSKLGTRISHRSVQKRMAEWGQKQAVASHITPHKLRHSF 256

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           AT   ++      +    G + +   + YT   D   L  
Sbjct: 257 ATHILESSNNLRAVQELLGHENISTTQIYTH-LDFQHLAD 295


>gi|262091779|gb|ACY25367.1| site-specific recombinase XerD [uncultured actinobacterium]
          Length = 308

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 47/268 (17%), Positives = 89/268 (33%), Gaps = 30/268 (11%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVESRKHTPSSAIQFLTSMR 141
             LA NS  ++     +     G     ++           +   K + +S  +  +++R
Sbjct: 23  RGLAANSIAAYRRDLVKFSIFLGSKSLSEVDSNAINDFEISLREAKLSVASINRVDSTLR 82

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ-----QFKSFWSEGSQPRLAF 196
             FK  ++QEY   +P L +   K      +  T   +       ++      ++ +   
Sbjct: 83  SFFKH-LQQEYGYADPTLEIAPQKSARRLPKALTISQIVSMIDVAYREGQPITARDQAML 141

Query: 197 EFLLYSGLRCSDSCRAGVQHL------QNNIFSIKTQKTG-TIITVELPDGFMKLLA--- 246
           E L  SG R S+     +  L         + ++K +  G     V L     K +    
Sbjct: 142 ELLYSSGARVSELIGINLNDLSSIDTSDGKVTTLKLRGKGAKERIVPLGSFATKAVENYL 201

Query: 247 -------MTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSAT 295
                   +   K T   F+N+   +++           A  AG+  + S H  R   AT
Sbjct: 202 VRVRPDLASKSSKVTSALFLNSRGSRISRQSAWQMVLDAADAAGITEHVSPHVFRHSYAT 261

Query: 296 ISADAGATAHELMATYGWKTVDQAETYT 323
              + GA    +    G  +V   + YT
Sbjct: 262 HLLNGGADIRVVQELLGHASVTTTQIYT 289


>gi|269214488|ref|ZP_05986672.2| tyrosine recombinase XerC [Neisseria lactamica ATCC 23970]
 gi|269209617|gb|EEZ76072.1| tyrosine recombinase XerC [Neisseria lactamica ATCC 23970]
          Length = 334

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 37/281 (13%), Positives = 84/281 (29%), Gaps = 24/281 (8%)

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD-------YRKITTKHIR 120
           P         Y ++      + ++  ++    +++                + ++ +   
Sbjct: 32  PDGFAAHFDAYLENIVREGKSEHTVAAYRRDLEELFALLAQMPSEAEGGVPQDLSRRDFT 91

Query: 121 SGVES---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
           + +     R     +  + L+S R    W V++  +  +P   +  PK+     +   +E
Sbjct: 92  AALRRLSQRGLNARTLARKLSSWRQYCAWLVKRGLMCADPTAGISPPKQPQRIPKALPQE 151

Query: 178 DMQQFKSF-----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-T 231
            + +              +    FE +  SGLR S+        +  +   +     G  
Sbjct: 152 WLNRMLDLPVDGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGKGRK 211

Query: 232 IITVELPDGFMKLL------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATK--AGVN 283
              V L     + L        T    +  F   +  +++  Q        A     G +
Sbjct: 212 QRQVPLTGKSAEALKNYLPLRQTASDGKALFTGRNGTRLSQRQIQKRLAQWAAINGDGRH 271

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            S H +R   A     A      +    G  ++   + YTK
Sbjct: 272 VSPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTK 312


>gi|225175747|ref|ZP_03729740.1| integrase family protein [Dethiobacter alkaliphilus AHT 1]
 gi|225168671|gb|EEG77472.1| integrase family protein [Dethiobacter alkaliphilus AHT 1]
          Length = 300

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 44/269 (16%), Positives = 89/269 (33%), Gaps = 25/269 (9%)

Query: 85  GSLAVNSRISFESYF----DQIIRKS--GDFDYRKITTKHIRSGV----ESRKHTPSSAI 134
             L+  +   +          ++R+         ++ TKH+R  +    + R +   +  
Sbjct: 20  RGLSDRTVDGYRMDIGVFARLMVREFFPQGMVLNQLETKHVRRFLVYLKKERDNNAGTRN 79

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFWSEGS 190
           + L S+R  FK+     YV  NP   +   K         T ++    +   K       
Sbjct: 80  RKLASLRSYFKFLEIHGYVEKNPVQQLRNVKTAKLLPVFLTIDESDRLINAAKKQAKPPY 139

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPD----GFMKLL 245
           +       LL +G R  +     + +L      ++   K      + L D       + L
Sbjct: 140 RDHAMMRVLLQTGCRVEELVSLNIGNLNLEEKYMRIIGKGNKERMIPLTDKTCAALAEYL 199

Query: 246 AMTPIGKE---TFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATISAD 299
                  E     F+N+   ++      + F     +AG+N+   + H +R    T+  +
Sbjct: 200 EARVPKDEKEKAVFLNHLGMRITYPGVQLVFNRLCEEAGLNRGRLTVHKLRHTCFTMLMN 259

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADR 328
           AG     +    G +++   E Y     R
Sbjct: 260 AGVDLPTIKDIAGHESISSTEIYVHVTQR 288


>gi|300723777|ref|YP_003713084.1| Tyrosine recombinase xerC 2 [Xenorhabdus nematophila ATCC 19061]
 gi|297630301|emb|CBJ90955.1| Tyrosine recombinase xerC 2 [Xenorhabdus nematophila ATCC 19061]
          Length = 342

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 39/293 (13%), Positives = 97/293 (33%), Gaps = 32/293 (10%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR--SGV 123
           + P TL+  +  Y  +      +  ++ ++       +      D R      +      
Sbjct: 2   ETPPTLRQQLEAYLDTVVDRGYSKRTQEAYRERLRPFVDWCELRDVRHAPQVSLALLESW 61

Query: 124 ESRKHTPSSAI----------QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI-R 172
           +    +   A             L+++R  F+W +++ ++  NP   +  PK +     +
Sbjct: 62  QRYLRSYRKADGQYYTSGGLINRLSALRGWFRWLLKRHHILYNPAELLTMPKEEKRLPAQ 121

Query: 173 PWTKEDMQQ----FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKT 226
             ++ + +            G + R   E    +G+R ++     +  +     +  ++ 
Sbjct: 122 VLSETETETVLMSIDIQTPLGLRNRALLEVFWSTGIRRNELINLKLSDIDSGRGVIMVRQ 181

Query: 227 QKTGTIITVELPDGFMKLLA----------MTPIGKETFFINNDKQKMNATQFSIWF-KA 275
            K      V + +  +  +                    FI    Q +  +  ++   + 
Sbjct: 182 GKGRKDRVVPIGERALAWVNRYLADVRPRLAWKYDSGYLFITLKGQPLARSTVTLMAGRT 241

Query: 276 KATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
              +A +NK  + H  R   AT   + GA    + A  G + ++  + YT+ A
Sbjct: 242 IRQQARLNKPGTCHVFRHSMATQMLENGADTRHIQAILGHEKLETTQIYTRVA 294


>gi|297170713|gb|ADI21736.1| site-specific recombinase XerD [uncultured actinobacterium
           HF0130_15N16]
          Length = 317

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 45/303 (14%), Positives = 104/303 (34%), Gaps = 32/303 (10%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQII-----RKSGDFDYRKITTKHIRSGVESRKHT 129
           + ++  S    +L  ++R S+    +        R        + T     + +      
Sbjct: 14  VEQFMHSLESRNLQESTRYSYGRDLESFRSWLDGRGEEIMMVEEGTINSYVAHLRKSGRA 73

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
           PS   +   S+R  +K+   + ++ ++P  ++   K      +    E +++  +    G
Sbjct: 74  PSGVARATVSIRSFYKYLTLEGHIKVDPGAAIAVLKVPQGFPKAIDIEKVERLLNT-PVG 132

Query: 190 -----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVEL------ 237
                 + R   E L  +GLR S+     V  +      ++   K      V L      
Sbjct: 133 EGPYVLRDRAILETLYGAGLRVSELTALVVDDVDLEDSFLRVFGKGRKERVVPLGGHAKD 192

Query: 238 ----------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKS 285
                      +  ++    T   +   F+N     ++        +    +AG+  + +
Sbjct: 193 ALAAWMSGAGREVLLERRKRTDQAQRNVFLNKFGNPLSRKGTWAIVRRHGLRAGLGDDLT 252

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT--KGADRIRLGIKNSRRISSVV 343
            H +R   AT   +AGA+   +    G  ++   + YT  + A+   + ++   R S+ +
Sbjct: 253 PHVLRHSCATHMLEAGASIRHVQELLGHSSIRSTQVYTGRREAELKAIYLEKHPRASAHL 312

Query: 344 DSD 346
             D
Sbjct: 313 MED 315


>gi|167037592|ref|YP_001665170.1| site-specific tyrosine recombinase XerC [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|256750822|ref|ZP_05491707.1| integrase family protein [Thermoanaerobacter ethanolicus CCSD1]
 gi|320116007|ref|YP_004186166.1| integrase family protein [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
 gi|166856426|gb|ABY94834.1| phage integrase family protein [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|256750405|gb|EEU63424.1| integrase family protein [Thermoanaerobacter ethanolicus CCSD1]
 gi|319929098|gb|ADV79783.1| integrase family protein [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
          Length = 330

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 49/268 (18%), Positives = 91/268 (33%), Gaps = 25/268 (9%)

Query: 99  FDQIIRKSGDFDYRKITTKHIRSGV-------ESRKHTPSSAIQFLTSMRVLFKWAVRQ- 150
           FD+I     D D   I +  +             R +TP +  + + S+R  + +  ++ 
Sbjct: 66  FDEI--DISDVDVDLIESVDLNDLYAYLNFVANERSNTPHARARKVASLRSFYNYLYKKA 123

Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR--LAFEFLLYSGLRCSD 208
           + ++ NP   +E PK         T ++ ++  +      + R        L  GLR S+
Sbjct: 124 KVLSKNPTQELESPKLSVRQPIYLTLDESKKLLNSIDGPFKERDYAIITLFLNCGLRVSE 183

Query: 209 SCRAGVQHLQNNIFSIKTQKTGTIITVELPDG--------FMKLLAMTPIGKETFFINND 260
                +  ++++  ++   K     TV L D                    K+  F++  
Sbjct: 184 LVNINLDDIKDDKLTVI-GKGNKQRTVYLNDACINAINTYLKVRPKEGVKDKKALFLSKR 242

Query: 261 KQKMNATQFSIWFKAKATKA---GVNKSAHGVRKFSATISADAG-ATAHELMATYGWKTV 316
            ++++        K     A   G   SAH +R  +AT+    G      L    G   V
Sbjct: 243 LKRISVKTVQYTVKKHLKNANLEGKKYSAHKLRHTAATLMYRYGNVDIRTLQKLLGHSNV 302

Query: 317 DQAETYTKGADRIRLGIKNSRRISSVVD 344
              + YT   D       N   +S   D
Sbjct: 303 STTQIYTHVDDSQLKEAVNKNPLSQKED 330


>gi|91774554|ref|YP_544310.1| tyrosine recombinase XerC subunit [Methylobacillus flagellatus KT]
 gi|91708541|gb|ABE48469.1| tyrosine recombinase XerC subunit [Methylobacillus flagellatus KT]
          Length = 291

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 39/270 (14%), Positives = 88/270 (32%), Gaps = 18/270 (6%)

Query: 73  WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES---RKH 128
            ++  Y +   +   L++ +   +    + +           +   HIR  + +   R  
Sbjct: 2   DVLQRYLEYLQFERGLSLLTVKHYRRDLELLFDLKSGMALDALQPSHIRRFIATLHGRGL 61

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           +  +  + L+  R  F + V++     NPC  +  PK      +    +   Q      E
Sbjct: 62  SGKTIARHLSGWRGFFDYLVKRHGATCNPCHDMRAPKSPKSLPKALAIDQAVQLVDMKGE 121

Query: 189 GS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------E 236
                + +   E    SGLR S+     +  L  +  ++K    G+   +          
Sbjct: 122 DVLSIRDKAILELFYSSGLRLSEVTGLNIGDLNLHEGTVKVLGKGSKSRIVPIGRHAIQA 181

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294
           + D            ++  F+N + ++++        K  A + G+  N   H +R   A
Sbjct: 182 MQDWLAVRQPAISSDEQAVFLNRNGRRISGRAIQYRIKQWAIRRGISSNVHPHMLRHSFA 241

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324
           +    +      +    G   +   + YT 
Sbjct: 242 SHVLQSSGDLRAVQEMLGHANISTTQVYTH 271


>gi|165977242|ref|YP_001652835.1| site-specific tyrosine recombinase XerC [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|307257905|ref|ZP_07539660.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           10 str. D13039]
 gi|165877343|gb|ABY70391.1| integrase/recombinase XerC [Actinobacillus pleuropneumoniae serovar
           3 str. JL03]
 gi|306863592|gb|EFM95520.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           10 str. D13039]
          Length = 336

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 36/259 (13%), Positives = 89/259 (34%), Gaps = 19/259 (7%)

Query: 85  GSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLT 138
              + ++  +++     +     ++G   ++++ +  +R  +     +     S    L 
Sbjct: 53  KQASQHTLSNYQRQLLAVSDMLSQAGISTWQEVNSATVRWIIAQSNKQGLGAKSIALRLV 112

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS---FWSEGSQPRLA 195
           ++R  F + +RQE +++NP + ++ PK      +    E  +Q  +         +    
Sbjct: 113 ALRQWFSYLIRQEKMSVNPAVGIKAPKASKRLPKNIDAEQAKQLLTSDSHEPSDLRDLAM 172

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMT------ 248
            E +  SGLR S+     +  +      ++   K      V +    ++ L         
Sbjct: 173 MELMYSSGLRLSELQGLDLGDMDLAGREVRLLGKGNKERIVPIGSKALEALNRWLAVRNQ 232

Query: 249 -PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAH 305
                   F+N    +++     +  +    K G+  +   H +R   AT   +A     
Sbjct: 233 FKPQDNAVFLNKRGGRLSHRSIQLVMQKWGEKQGLESHLHPHKLRHSFATHMLEASGDLR 292

Query: 306 ELMATYGWKTVDQAETYTK 324
            +    G   +   + YT 
Sbjct: 293 AVQELLGHSNLATTQIYTH 311


>gi|320321214|gb|EFW77351.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. glycinea str. B076]
          Length = 320

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 54/277 (19%), Positives = 107/277 (38%), Gaps = 32/277 (11%)

Query: 84  WGSLA-VNSRISFESYFDQIIRKSGDF---DYRKITTKHI---RSGVESRKHTPSSAIQF 136
           + +L    +R ++++         G     D+R++T  H+   R+ +E R    ++  + 
Sbjct: 33  FANLDNPRTRRAYQNDLTDFSSFIGLASADDFRQVTRSHVLAWRADLEQRGLAGATIRRK 92

Query: 137 LTSMRVLFKWAVRQE-YVAINPCLSVERPKRKT-EGIRPWTKED-----MQQFKSFWSEG 189
           L ++  LF   +        NP   V+RP+ ++ EG  P   +      ++       +G
Sbjct: 93  LAALASLFDHLLDNNAVAGGNPVHGVKRPRIESNEGKTPALGDHQAKALLEAPDESTLKG 152

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKT-QKTGTIITVELPDG------ 240
            + R     LLY GLR  ++ +  V  +  +  I  +K   K G +  + L         
Sbjct: 153 RRDRAMLAVLLYHGLRREEAAQLQVSDIQERRGIQHLKIHGKGGKVRYLPLHPVAAGRIH 212

Query: 241 --FMKLLAMTPIGKETFFINNDKQ----KMNATQFSIWFKAKATKAGV---NKSAHGVRK 291
               +        K   FI+   +     ++A       +A A KAG+       HG+R 
Sbjct: 213 LYLERSGHHLDDKKVPLFISLRGKSTGAGVSANGIYTVVEAYAKKAGIEVDGLGVHGLRA 272

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
            +AT + +  A   ++ A  G   +   + Y +  +R
Sbjct: 273 TAATNALEHEADIAKVQAWLGHANISTTKIYDRRENR 309


>gi|161610765|ref|YP_067311.2| site-specific tyrosine recombinase XerD [Rickettsia typhi str.
           Wilmington]
          Length = 306

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 49/287 (17%), Positives = 101/287 (35%), Gaps = 39/287 (13%)

Query: 75  ISEYRKSA-HWGSLAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVESRKH 128
           I ++ +      +L+ NS +S++            +K  + +      +     + S   
Sbjct: 4   IEQFLEMLLAERALSKNSILSYKRDLLDFHNYLTKQKISELNITTRNIRKWIEYLASNNL 63

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-- 186
              S  + +++++  + + + + + A NP L+V+ PK + +     + + ++    +   
Sbjct: 64  HARSINRKISTIKSYYTFLISENHTAFNPVLNVDLPKYQNKLPVILSIDQIKLILEYCSK 123

Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN---------IFSIKTQKTGTIIT 234
               EG +       L  SGLR S+     +  +  N         IFS+  +     + 
Sbjct: 124 DHTPEGIRLNAMIHLLYASGLRVSELVSLKLADILTNNTSKGIVRKIFSVLGKGNKERVI 183

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQK--------------MNATQFSIWFKAKATKA 280
           V      + +     I     F+N  K K              M    F+I  K+ A   
Sbjct: 184 VINDQAVLSITKYLKIRD--IFVNKAKSKNLIYLFPSSAVAGYMTRQNFAILLKSVALDI 241

Query: 281 GVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           G+N    S H +R   A+   + GA    +    G   +   + YT 
Sbjct: 242 GLNPKNVSPHILRHSFASHLLEGGADLRVIQELLGHADISTTQIYTH 288


>gi|256371915|ref|YP_003109739.1| integrase family protein [Acidimicrobium ferrooxidans DSM 10331]
 gi|256008499|gb|ACU54066.1| integrase family protein [Acidimicrobium ferrooxidans DSM 10331]
          Length = 299

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 47/258 (18%), Positives = 94/258 (36%), Gaps = 18/258 (6%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKIT--TKHIRSGVES--RKHTPSSAIQFLTSM 140
              +  + I++ S  + +         R +      +RS V++  R+ +P    +  +++
Sbjct: 20  ADRSELTAIAYRSDLEAVATWLEARGSRLLDASPALLRSWVDAAGRERSPRGVQRAASAL 79

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK----SFWSEGSQPRLAF 196
           R LF++A R    A +P   +  P       R   ++++++      +    G++ R   
Sbjct: 80  RGLFRYAQRVGARADDPMEGIHAPGTAVALPRALARDEVERLIESVGTADVAGARDRAIL 139

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL--------AMT 248
           E L  SG+R S+ C   +  +    +     K G    V +       L           
Sbjct: 140 EVLYGSGVRVSELCGFTLDTIAQGRWVPVVGKRGRERLVPISAPARDALEQWVVRWRPQL 199

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHE 306
                  F+N     +      +  K +A++ G+    S H +R   A    +AGA    
Sbjct: 200 APKHRMLFVNLRGAPITRQGVWLVLKQRASRVGLGDRVSPHVLRHSLAVHMVEAGADLRV 259

Query: 307 LMATYGWKTVDQAETYTK 324
           +    G  ++   E YTK
Sbjct: 260 VQEILGHASLATTELYTK 277


>gi|156972655|ref|YP_001443562.1| site-specific tyrosine recombinase XerC [Vibrio harveyi ATCC
           BAA-1116]
 gi|166918907|sp|A7N0V8|XERC_VIBHB RecName: Full=Tyrosine recombinase xerC
 gi|156524249|gb|ABU69335.1| hypothetical protein VIBHAR_00307 [Vibrio harveyi ATCC BAA-1116]
          Length = 313

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 36/278 (12%), Positives = 91/278 (32%), Gaps = 21/278 (7%)

Query: 68  PTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV--- 123
           P +L+  +  + +       L+++++ +++   + +     +   +  +           
Sbjct: 10  PNSLQKPLERFYEFLRSEKGLSLHTQRNYKQQLETMAHHLAEMGLKDWSQVDAGWVRQLA 69

Query: 124 ---ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                     SS    L+S+R  F + + +  +  NP   V  P++K    +    +++ 
Sbjct: 70  GKGMREGMKASSLATRLSSLRSFFDFLILRGEMLANPAKGVSAPRKKRPLPKNLDVDEVN 129

Query: 181 QFKSF---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE 236
           Q            + R   E +  +GLR ++     V+ +Q     ++   K      V 
Sbjct: 130 QLLEVNEDDPLAVRDRAMMELMYGAGLRLAELVSVDVRDVQLRSGELRVIGKGDKERKVP 189

Query: 237 --------LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286
                   +         +   G+   F++    +++             K  V  + S 
Sbjct: 190 FSGMATEWVGKWLRVRGDLAAPGEPALFVSKLGTRISHRSVQKRMAEWGQKQSVASHISP 249

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           H +R   AT   ++      +    G + +   + YT 
Sbjct: 250 HKLRHSFATHMLESSNNLRAVQELLGHENISTTQIYTH 287


>gi|302391937|ref|YP_003827757.1| integrase family protein [Acetohalobium arabaticum DSM 5501]
 gi|302204014|gb|ADL12692.1| integrase family protein [Acetohalobium arabaticum DSM 5501]
          Length = 310

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 47/267 (17%), Positives = 93/267 (34%), Gaps = 27/267 (10%)

Query: 94  SFESYFDQIIR-KSGDFDYRKITTKHIRSGVES----RKHTPSSAIQFLTSMRVLFKWAV 148
            F  Y ++       + +   I    +   +      + ++P +  + L S+R  F++  
Sbjct: 37  VFGRYLEKEFDCNLEELNVTNINRFEVSEFLSDIILVKDNSPEARNRKLYSLRSFFEYLK 96

Query: 149 RQEYVAINPCLSVERPKRK-TEGIRPWTKEDMQQFKSFWSEG-----SQPRLAFEFLLYS 202
           ++  +  NP  S+E  K +         +++M+++            S+     +  LYS
Sbjct: 97  KRNIIKNNPTDSIEASKSELKSEPIYLNEKNMEKYLEAIKNYNSKYCSRDLAINKLFLYS 156

Query: 203 GLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELP--------DGFMKLLAMTP---I 250
           GLR S+     +  +     SIK   K      V L         D       +TP    
Sbjct: 157 GLRISELVNLNLDDINYEDQSIKFFGKGNKERYVPLHQEALTAIKDYLPDRNKITPKNQD 216

Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGV----NKSAHGVRKFSATISADAGATAHE 306
            ++  F++N +++++        K  A KAGV      + H +R   A++          
Sbjct: 217 ARQALFLSNQRRRISVRTIQKMVKKYAKKAGVRNASKITPHKLRHTFASLLYQKTKDLRV 276

Query: 307 LMATYGWKTVDQAETYTKGADRIRLGI 333
           L    G   +   + YT      R   
Sbjct: 277 LQDLLGHSDISTTQIYTHTDKEQRKSA 303


>gi|67458963|ref|YP_246587.1| site-specific tyrosine recombinase XerD [Rickettsia felis
           URRWXCal2]
 gi|75536599|sp|Q4UM01|XERD_RICFE RecName: Full=Tyrosine recombinase xerD
 gi|67004496|gb|AAY61422.1| Tyrosine recombinase XerD [Rickettsia felis URRWXCal2]
          Length = 306

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 53/287 (18%), Positives = 106/287 (36%), Gaps = 39/287 (13%)

Query: 75  ISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRK--ITTKHIRSGVESRKHT-- 129
           IS++ +      +L+ NS +S++                +  ITT+++R  +E       
Sbjct: 4   ISQFLEMLLAERALSKNSILSYKRDLFDFQNYLAKQRLSELNITTENVRDWIEYLASNDL 63

Query: 130 -PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-- 186
              S  + +++++  +++ + + + A NP L+V+ PK + +     + + ++    +   
Sbjct: 64  QARSINRKISTIKSYYEFLISENHTAFNPVLNVDLPKYQNKLPEILSIDQIKSLLEYCSQ 123

Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN---------IFSIKTQKTGTIIT 234
               EG +       L  SGLR S+     +  +  N         IFS+  +     + 
Sbjct: 124 DNSPEGIRLNAMIHLLYASGLRVSELVSLKLTDILTNKTSKGEVRKIFSVLGKGNKERVI 183

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQK--------------MNATQFSIWFKAKATKA 280
           V      + +     I     F+N  K K              M    F+I  K+ A  A
Sbjct: 184 VINEQAVISIAKYLAIRD--VFVNKAKPKNLIYLFPSSALAGYMTRQNFAILLKSAALYA 241

Query: 281 GVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            +N    S H +R   A+   + GA    +    G   +   + YT 
Sbjct: 242 NLNPEHISPHILRHSFASHLLEGGADLRVIQGLLGHADISTTQIYTH 288


>gi|224476375|ref|YP_002633981.1| putative site-specific recombinase XerC [Staphylococcus carnosus
           subsp. carnosus TM300]
 gi|254799358|sp|B9DPG4|XERC_STACT RecName: Full=Tyrosine recombinase xerC
 gi|222420982|emb|CAL27796.1| putative site-specific recombinase XerC [Staphylococcus carnosus
           subsp. carnosus TM300]
          Length = 296

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 39/262 (14%), Positives = 96/262 (36%), Gaps = 20/262 (7%)

Query: 88  AVNSRISFESYFDQI--IRKSGDFDYRKITTKHIRSGVE---SRKHTPSSAIQFLTSMRV 142
           + ++  S+     Q     +      +    K  R+ +    S+    ++  + ++++R 
Sbjct: 19  SKHTLKSYHDDLVQFNAFLEHEHLKLKSFEYKDARNYLSFLYSKGLKRTTVSRKISTLRS 78

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLAFEF 198
            +++ + Q+   +NP + +  PK++      + +E+M             G + R+  E 
Sbjct: 79  FYEFWMTQDDTVVNPFVQLVHPKKEQYLPHFFYEEEMSALFETVEADGHKGLRDRVILEL 138

Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE----LPDGFMKLLAMTP---- 249
           L  +G+R S+     ++ L  N   +K   K      +       +   + L + P    
Sbjct: 139 LYGTGIRVSELVNIKLEDLDLNSPGVKVLGKGNKERFIPFGNMCRESIERYLELFPPIQN 198

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATK-AGV-NKSAHGVRKFSATISADAGATAHEL 307
           +  +   +N + + +              + AGV +   H +R   AT   + GA    +
Sbjct: 199 VKHDYLLVNINGRPITERGVRYVLNDIVKRTAGVTDIHPHKLRHTFATHMLNEGADLRTV 258

Query: 308 MATYGWKTVDQAETYTKGADRI 329
            +  G   +     YT  +++ 
Sbjct: 259 QSLLGHVNLSTTGRYTHVSNQQ 280


>gi|160900140|ref|YP_001565722.1| integrase family protein [Delftia acidovorans SPH-1]
 gi|160365724|gb|ABX37337.1| integrase family protein [Delftia acidovorans SPH-1]
          Length = 342

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 57/338 (16%), Positives = 110/338 (32%), Gaps = 34/338 (10%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
           LP  V +     G   ++ R    +RI          +PA   AL       +  +    
Sbjct: 8   LPKRVYE----KGGAYWHVRAEGKKRIWARLSTIRDGLPALYRALAAMEQADQTRD---- 59

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
              ++  LI+++         +V ++ +       I     +F  +++T   I   ++  
Sbjct: 60  ---SMAALIADWLAEVG-SRHSVKTQANDAYQTRTISESFQEFRAQEVTAPAIVEFLKHF 115

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
              P +   + + +R L ++A  + Y     NP  S++    K    R  T  ++++ K 
Sbjct: 116 SDKPRTYNAYRSMLRELMRFAEEKGYRPPGTNPVDSLKTMSVKAR-TRYITDSEVRRIKV 174

Query: 185 ---FWSEGSQPR------LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK----TGT 231
              +  +G + R         +    +G R  D        +     + +  K    TG 
Sbjct: 175 AVMYGDDGKRTRSGHTICALIDMAYLTGQRIGDLLTLRWSDVGKQGITFQPAKTEGSTGA 234

Query: 232 IITVELPDGFMKL---LAMTPIGKETF-FINNDKQKMNATQFSIWFKAKATKAGV-NKSA 286
            + +        +   L   P     F F     Q    +  S  +K    +AGV +   
Sbjct: 235 QVLIAWTQRLRNVVDRLRALPNQSPDFVFCTLQGQPYTYSGASTAWKRAVKRAGVKDCHF 294

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           H +R  + T   D G    E        T  Q   Y +
Sbjct: 295 HDLRGKALTDV-DRGRGIMEAQRMGAHSTQSQTADYVR 331


>gi|210634278|ref|ZP_03298051.1| hypothetical protein COLSTE_01973 [Collinsella stercoris DSM 13279]
 gi|210158880|gb|EEA89851.1| hypothetical protein COLSTE_01973 [Collinsella stercoris DSM 13279]
          Length = 302

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 45/286 (15%), Positives = 90/286 (31%), Gaps = 31/286 (10%)

Query: 75  ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHTP 130
             EY        +L+  +  ++    +         G      +T + +   V  R+ T 
Sbjct: 8   CREYLGHLSVERNLSPYTVAAYRRDLEAYRAFLAERGVTGPDSVTRRDVEDFVAHRRETG 67

Query: 131 SS---AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFK 183
           ++     + L++++ L ++ VR+      P  ++  PK         + +     + Q  
Sbjct: 68  AADASVNRALSAVKGLHRFLVREGISTTYPTSAIRTPKAAKHLPDVISIDQACALLDQPF 127

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELP---- 238
              + G++   A E L   GLR S+     V+ L  +  F +   K        +     
Sbjct: 128 PATAAGARDHAALEVLYGCGLRVSELTGLDVRDLHLDEEFLLVMGKGSKERLAPITGSAL 187

Query: 239 ------------DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-S 285
                       D  M       +     F+N    +++        +      G+    
Sbjct: 188 RALEAYLTLGARDELMGHARAAGVS-PAVFLNARGTRLSRQSVHAICERYGRMVGIEGLH 246

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            H +R   AT     GA    L    G   +   + YT   D+ +L
Sbjct: 247 PHTLRHSFATHMLAGGADLRVLQEILGHADIATTQIYTH-VDQTQL 291


>gi|254488719|ref|ZP_05101924.1| tyrosine recombinase XerD [Roseobacter sp. GAI101]
 gi|214045588|gb|EEB86226.1| tyrosine recombinase XerD [Roseobacter sp. GAI101]
          Length = 324

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 41/287 (14%), Positives = 95/287 (33%), Gaps = 32/287 (11%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGV---E 124
           T  W+ +     A     + N+++++                D+ + T   +   +   +
Sbjct: 5   TYHWISTFLEAQAAELGASTNTQLAYGRDLKDFDSFLAGRHLDFARATRDDVERYLVWCD 64

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
           ++    S+  + L++++ ++++A  + + + NP + +  P +     +  ++ ++ +   
Sbjct: 65  AQGLAKSTRARRLSAIKQIYRFAFEESWRSDNPAIQISGPGQDKRLPKILSEHEVDRLLE 124

Query: 185 FWS---EGSQPRLA----FEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVE 236
                      +L      E L  +G+R S+     V   + +    +   K      V 
Sbjct: 125 AARGSGRNLHEKLRNTCLMELLYATGMRVSELVSLPVSATRGDPRLLLIMGKGNKERLVP 184

Query: 237 LPDGFMKLLAMTPIGKE--------------TFFINNDKQK--MNATQFSIWFKAKATKA 280
           L       L    I ++               F   +      +   +F +  K  A   
Sbjct: 185 LSPPARVALTDWLIARDQIDAAAQAKKQPASRFLFPSRGVAGYLTRHRFYLMIKEFAVAG 244

Query: 281 GVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           GV+    + H +R   AT     GA    +    G   V   E YT 
Sbjct: 245 GVDPSKVTPHTLRHAFATHLLANGADLRAIQTMLGHADVATTEIYTH 291


>gi|237718114|ref|ZP_04548595.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4]
 gi|229452535|gb|EEO58326.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4]
          Length = 390

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 54/231 (23%), Positives = 87/231 (37%), Gaps = 16/231 (6%)

Query: 111 YRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV---ERPKRK 167
            R     HI+ G E R  + ++A ++L         AVRQ  +  NP   +   ER + K
Sbjct: 153 LRNFPNSHIKYG-EPRPISENTASRYLGMFSTALNNAVRQGIIRNNPMKELDARERIQPK 211

Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL------QNNI 221
                  T E+++   +  S   + + AF F  ++GLR SD  R    H+      +   
Sbjct: 212 DGKKEYLTIEELRTLMATDSYRPEVKEAFIFACFTGLRLSDMYRLAPMHIFKTADGKGEY 271

Query: 222 FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281
             ++ QKT   + + L +   + L   P G +  F +        T      +  A  AG
Sbjct: 272 IDMEMQKTEKPVIIPLSEEAKRWLP-KPRGNDIPFFDI---PTTQTVIGRALRKWAEAAG 327

Query: 282 VNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
           + K  S H  R    T+    GA         G   +   E Y K  D+ +
Sbjct: 328 IEKHISFHSSRHTFGTMMLTLGADLFTTSKLMGHSNIQTTEIYAKIVDKKK 378


>gi|212715582|ref|ZP_03323710.1| hypothetical protein BIFCAT_00481 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660949|gb|EEB21524.1| hypothetical protein BIFCAT_00481 [Bifidobacterium catenulatum DSM
           16992]
          Length = 317

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 38/296 (12%), Positives = 95/296 (32%), Gaps = 42/296 (14%)

Query: 71  LKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR------SGV 123
            + +I ++         L+  +  ++ +   +  +   +     IT+   +      + +
Sbjct: 4   FERMIRQFLAHIDVERGLSKATVSAYGADLKKYRQWLANRGINDITSVTTQDVENYVAFL 63

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
           +    +  S  + L S+    ++AV +  VA +    V+ PK  +        +++ +  
Sbjct: 64  DESGESARSKARRLASIHAFHRFAVDEHSVADDVSAQVKAPKGASTLPDVLAIDEVARLL 123

Query: 184 SFWSEGS------------------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSI 224
                                    + +   EF+  +G R S++C A +  +      + 
Sbjct: 124 EAIPVSQNRACDDASLEVSDDPVMLRDKALLEFMYATGARVSEACGANLDDVDTESRIAR 183

Query: 225 KTQKTGTIITVELPDGFMKLLAM--------------TPIGKETFFINNDKQKMNATQFS 270
              K      V +     + ++                P  +   F+N   ++++     
Sbjct: 184 LMGKGSKQRLVPVGSYACEAISRYVRSGRPILESKSKGPQERRALFLNKRGRRLSRQSVW 243

Query: 271 IWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              +    +A ++K    H +R   AT     GA    +    G  +V   + YT 
Sbjct: 244 EIIRVAGERAHIDKPLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTH 299


>gi|15639382|ref|NP_218831.1| integrase/recombinase (codV) [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189025624|ref|YP_001933396.1| integrase/recombinase [Treponema pallidum subsp. pallidum SS14]
 gi|3322669|gb|AAC65375.1| integrase/recombinase (codV) [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189018199|gb|ACD70817.1| integrase/recombinase [Treponema pallidum subsp. pallidum SS14]
 gi|291059781|gb|ADD72516.1| tyrosine recombinase XerD [Treponema pallidum subsp. pallidum str.
           Chicago]
          Length = 306

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 39/276 (14%), Positives = 85/276 (30%), Gaps = 27/276 (9%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHIRSGVESRKH---TPSS 132
            Y  SA   +L   +  ++ +      +      +            +E R     +  +
Sbjct: 13  AYLISAEAHAL--LTARTYVTTLMLFQKNLDPPCNIESANAHDCVRFIEKRSAAGVSGKT 70

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE---- 188
             + + ++   +++ + ++    NP   V+ P+R     R  + E +  F          
Sbjct: 71  IAKDMAALHAFYQFLILEQVRPDNPMQDVDAPRRAYSLPRVLSPEQVNTFLQSIPLCTPG 130

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDG----FMK 243
           G + R  FE +  +GLR S++    +  +         T K          +      M+
Sbjct: 131 GVRDRALFELIYAAGLRVSEAVSLSLSDIFFAERLLKVTGKGNKERMAPFGEQACYFLMQ 190

Query: 244 LLAMTPI------------GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRK 291
            +    +             K   F+N    +++        +    ++GV    H  R 
Sbjct: 191 YIREARVRFTSAKHPENSEKKGAVFLNRQGGRLSRKGIWKRLQDIEIRSGVETHVHTFRH 250

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
             AT     G   H +    G   +   + YT   +
Sbjct: 251 SYATHLLAGGVDLHSVQCLLGHADIATTQVYTHVEN 286


>gi|291615720|ref|YP_003518462.1| XerC [Pantoea ananatis LMG 20103]
 gi|291150750|gb|ADD75334.1| XerC [Pantoea ananatis LMG 20103]
          Length = 301

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 37/259 (14%), Positives = 82/259 (31%), Gaps = 19/259 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRK---ITTKHIRSGVESRKHTPSSAIQF---LT 138
             L+  +  S+      ++  + +        +    +RS     +    +A      L+
Sbjct: 20  RQLSPLTLSSYARQLAALVTIADEMKISAWSQLDPAMVRSMAARSRRAGLAASSLALRLS 79

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLA 195
           ++R    W V ++ +A NP   +  P+      +    +D+ Q            + R  
Sbjct: 80  ALRSFLDWQVSRDMLAANPAKGIATPRNGRHLPKNIDVDDVNQLLEIDLTDPLAIRDRTM 139

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLA-------M 247
            E +   GLR S+      +H+           K      V +    +  +         
Sbjct: 140 LEVMYGGGLRLSELVNMDCRHVDLEAGEVWVLGKGSKERRVPIGRTAVSWIQQWLPLRTA 199

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAH 305
              G +  F+++   +++A      F     K G+  +   H +R   AT   ++     
Sbjct: 200 FNPGDDALFLSSRGSRISARNVQKRFAEWGIKQGLSSHIHPHKLRHSFATHLLESSGDLR 259

Query: 306 ELMATYGWKTVDQAETYTK 324
            +    G   +   + YT 
Sbjct: 260 AVQELLGHANLSTTQIYTH 278


>gi|298529892|ref|ZP_07017294.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298509266|gb|EFI33170.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
          Length = 386

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 53/261 (20%), Positives = 100/261 (38%), Gaps = 21/261 (8%)

Query: 100 DQIIRKSGDFDYRKITTKHIRSGVES---RKHTPSSAIQFLTSMRVLFKWAVRQEY--VA 154
           + +I K G     +I   HI S  +      + P++A + +  +R +F  A++ +   V 
Sbjct: 130 NHLIPKFGGMHMDQIKRDHIISLHQQCLLADYKPATANRLVVLLRYIFNLALKWDTAGVR 189

Query: 155 INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRA 212
            NP   V   +   +  R   K ++ +      E   P L      LL +G R S+  +A
Sbjct: 190 TNPTKEVTLAEENNQRDRYLDKNELDRLCKALKESENPLLEPIILMLLLTGARKSEVLKA 249

Query: 213 GVQHLQNNIFSI----KTQKTGTIITVELPDGFMKLLAMTP--IGKETFFINNDKQKMNA 266
              +      +        KTG   T+ L D  +++L       G    F N        
Sbjct: 250 KWHNFDFERRTWQIPGTDTKTGKTRTIPLSDSALEVLDKIKYVDGCPYVFPN----PDTQ 305

Query: 267 TQFSIWFKAK---ATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
             F+  F++      KAG+ +   H +R   ++   ++G + +E+    G   +     Y
Sbjct: 306 KPFTAIFRSWDTARKKAGLGEVRIHDLRHSFSSFLINSGRSIYEVSELLGHTQIKTTMRY 365

Query: 323 TKGADRIRLGIKNSRRISSVV 343
              A++  L   NS  +++V 
Sbjct: 366 AHLANQTLLDAVNSVPLNNVA 386


>gi|240127425|ref|ZP_04740086.1| putative site-specific recombinase [Neisseria gonorrhoeae
           SK-93-1035]
 gi|268685800|ref|ZP_06152662.1| tyrosine recombinase xerC [Neisseria gonorrhoeae SK-93-1035]
 gi|268626084|gb|EEZ58484.1| tyrosine recombinase xerC [Neisseria gonorrhoeae SK-93-1035]
          Length = 305

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 34/278 (12%), Positives = 86/278 (30%), Gaps = 24/278 (8%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD-------YRKITTKHIRSGV 123
                  Y ++      + ++  ++    +++                + ++ +   + +
Sbjct: 6   FAAYFDAYLENIVREGKSEHTVAAYRRDLEELFALLAQMPSEDAGGVPQDLSRRDFTAAL 65

Query: 124 ESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                      +  + L++ R    W V++  +  +P   ++ PK+     +   +E + 
Sbjct: 66  RRLSQRGLDGRTLARKLSAWRQYCAWLVKRGLMRADPTADIKPPKQPERVPKALPQEWLN 125

Query: 181 QFKSF-----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIIT 234
           +              +    FE +  SGLR S+        +  +   +     G     
Sbjct: 126 RMLDLPVDGGDPLAVRDYALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGKGRKQRQ 185

Query: 235 VELP----DGFMKL--LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK--AGVNKSA 286
           V L     +       L  T    +  F   +  +++  Q     ++ A +   G + S 
Sbjct: 186 VPLTGKSVEALKNYLPLRQTASDGKALFTGRNGTRLSQRQIQKRLESWAAQYGDGRHVSP 245

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           H +R   A     A      +    G  ++   + YTK
Sbjct: 246 HMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTK 283


>gi|183602476|ref|ZP_02963842.1| site-specific tyrosine recombinase XerC [Bifidobacterium animalis
           subsp. lactis HN019]
 gi|241191170|ref|YP_002968564.1| site-specific tyrosine recombinase XerC [Bifidobacterium animalis
           subsp. lactis Bl-04]
 gi|241196576|ref|YP_002970131.1| site-specific tyrosine recombinase XerC [Bifidobacterium animalis
           subsp. lactis DSM 10140]
 gi|183218395|gb|EDT89040.1| site-specific tyrosine recombinase XerC [Bifidobacterium animalis
           subsp. lactis HN019]
 gi|240249562|gb|ACS46502.1| site-specific tyrosine recombinase XerC [Bifidobacterium animalis
           subsp. lactis Bl-04]
 gi|240251130|gb|ACS48069.1| site-specific tyrosine recombinase XerC [Bifidobacterium animalis
           subsp. lactis DSM 10140]
 gi|289177279|gb|ADC84525.1| Integrase/recombinase (XerD/RipX family) [Bifidobacterium animalis
           subsp. lactis BB-12]
 gi|295794163|gb|ADG33698.1| site-specific tyrosine recombinase XerC [Bifidobacterium animalis
           subsp. lactis V9]
          Length = 311

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 47/298 (15%), Positives = 94/298 (31%), Gaps = 44/298 (14%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           EY +S     L+ ++ +++        + +   G  +   +T   +R  +    HT    
Sbjct: 12  EYLRSNR--GLSEHTCMAYRGDILQCLEALDAFGRGNPDDVTLDDLRMWMGRMAHTVGKT 69

Query: 134 IQFLTSM--RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF--------- 182
                ++  R  F WA     +A NP  ++  PK          ++  ++          
Sbjct: 70  SLARKTIAVRSFFTWAYEHGMLAHNPAHALRTPKIDRNLPAVLNEDQAERLMDTVDAEAG 129

Query: 183 -----------KSFWSEGSQPRLAFEFLLYSGLRCSDSC--RAGVQHLQNNIFSIKTQKT 229
                       +  ++  +     E L  +G+R  +      G     N    +  +  
Sbjct: 130 EKNAGKSKDDALNAHAKALRDCAMLELLYATGMRVGELVGLDMGSFDWSNRTVRVLGKGN 189

Query: 230 GTIITVELPDGFMKLLAMTPIGKETF---------FINNDKQKMNATQFSIWFKAKATKA 280
            T +          +      G+  F         FI     +++          +A +A
Sbjct: 190 KTRVIPFGAPAQQAVEHWLHGGRPVFANGNSGNAVFIGVRGCRIDQRVVRQVVHEQAEQA 249

Query: 281 GV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-----DRIRLG 332
           GV + S H +R  +AT   D GA   E+    G  ++   + Y   +     DR R  
Sbjct: 250 GVPDISPHALRHSAATHMLDGGADLREVQEMLGHSSLQTTQRYAHVSIEQLKDRYRQA 307


>gi|292486680|ref|YP_003529550.1| tyrosine recombinase xerC [Erwinia amylovora CFBP1430]
 gi|292897917|ref|YP_003537286.1| tyrosine recombinase [Erwinia amylovora ATCC 49946]
 gi|291197765|emb|CBJ44860.1| tyrosine recombinase [Erwinia amylovora ATCC 49946]
 gi|291552097|emb|CBA19134.1| Tyrosine recombinase xerC [Erwinia amylovora CFBP1430]
          Length = 302

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 37/259 (14%), Positives = 84/259 (32%), Gaps = 19/259 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRKHTPSSAIQFLT 138
             L+  +++++      II    +    +         + + +        P+S    L+
Sbjct: 22  RQLSPLTQVNYRRQLSAIIVLLDELKVVEWARLDASLVRSLAARSTRSGLKPASLALRLS 81

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLA 195
           ++R    W V Q  +  NP   V  P+      +    +++ +            + R  
Sbjct: 82  ALRSFLDWLVSQGAIKANPAKGVATPRAARHLPKNIDVDEVNRLLEIDLNDPLAVRDRAM 141

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT--------IITVELPDGFMKLLAM 247
            E +  +GLR S+     + HL      +     G+           V   + ++ +  +
Sbjct: 142 LEAMYGAGLRLSELVGIDLGHLDLASGEVWVIGKGSKERRLPMGRTAVHWVENWLAMREL 201

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAH 305
                   F++N  ++++       F     K GV  +   H +R   AT   ++     
Sbjct: 202 FEPQDNALFLSNQGKRISTRNVQKRFAEWGVKQGVSSHIHPHKLRHSFATHMLESSGDLR 261

Query: 306 ELMATYGWKTVDQAETYTK 324
            +    G   +   + YT 
Sbjct: 262 AVQELLGHANLTTTQIYTH 280


>gi|160942095|ref|ZP_02089410.1| hypothetical protein CLOBOL_06983 [Clostridium bolteae ATCC
           BAA-613]
 gi|158434986|gb|EDP12753.1| hypothetical protein CLOBOL_06983 [Clostridium bolteae ATCC
           BAA-613]
          Length = 218

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 31/202 (15%), Positives = 64/202 (31%), Gaps = 16/202 (7%)

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLA 195
           M+  F +  ++  +  +P   ++ PK + +     +  ++          +    + +  
Sbjct: 1   MKAFFNFMFKEGRIRKDPAELLKAPKIEKKAPVILSVNEVNALLDQPGMTTSKEIRDKAM 60

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET- 254
            E L  +G+R S+     +  L   +  I  +       V       + L++      + 
Sbjct: 61  LELLYATGIRVSELIGLELSDLNMQVGYITCRDGQKERMVPFGKPAKQALSVYLEKGRSQ 120

Query: 255 ---------FFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGAT 303
                     F N   + M+   F    K    KAG+  + + H +R   A      GA 
Sbjct: 121 LLKGKESQWLFTNCSGKAMSRQGFWKIIKYYGEKAGIQADITPHTLRHSFAAHLIRGGAD 180

Query: 304 AHELMATYGWKTVDQAETYTKG 325
            H + A  G         Y   
Sbjct: 181 IHAVQAMLGHSDSTTTHMYAAY 202


>gi|229824242|ref|ZP_04450311.1| hypothetical protein GCWU000282_01546 [Catonella morbi ATCC 51271]
 gi|229786596|gb|EEP22710.1| hypothetical protein GCWU000282_01546 [Catonella morbi ATCC 51271]
          Length = 331

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 46/270 (17%), Positives = 102/270 (37%), Gaps = 24/270 (8%)

Query: 85  GSLAVNSRISFE---SYFDQIIRKSGDFDYRKITTKHIR---SGVESRKHTPSSAIQFLT 138
              +  +  +++   + F   I  SG  D ++I  + +R   + +  + +  +S  + L+
Sbjct: 45  RRYSQKTLAAYQQDLAAFQSFIETSGGGDLKQIAYQDVRLYLAYLNEQAYAKTSIRRKLS 104

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-----FKSFWSEGSQPR 193
           S+R  F + + Q ++  NP   V+   +K    + + ++++ Q     +K       + R
Sbjct: 105 SLRSFFTYCLSQGWIETNPMELVQYQVKKKTLPQFFYEQELTQLFDSLYKREDDAAWRDR 164

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLA------ 246
           +  E L  +G+R S+     ++ L   +  I+   K      V L D   + +       
Sbjct: 165 MLLEVLYATGMRVSELSELSLERLNLEVQLIRVLGKGNKERIVPLGDSATQAIRDYLSHL 224

Query: 247 ---MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAG 301
              +         + +    M+  Q     K+   +  +N     H +R   AT   + G
Sbjct: 225 RPKIDRNNSPYLLLTDKGAPMSPRQIRTRLKSLVEEQAMNLKIYPHKLRHSFATHLLNKG 284

Query: 302 ATAHELMATYGWKTVDQAETYTK-GADRIR 330
           A    +    G   +   + YT    D++R
Sbjct: 285 ADLRTVQELLGHANLSSTQIYTHVTKDQLR 314


>gi|254368999|ref|ZP_04985012.1| integrase/recombinase XerC [Francisella tularensis subsp.
           holarctica FSC022]
 gi|157121920|gb|EDO66090.1| integrase/recombinase XerC [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 292

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 38/264 (14%), Positives = 93/264 (35%), Gaps = 18/264 (6%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI---RSGVESRKHTPSSAIQFLTSMR 141
            + +  +  +++    Q+ +   D +   +T   I      + ++ ++P +  + L+S+R
Sbjct: 18  KNYSQETINNYQRDLLQLNQALSDKNIISLTHSDILIWIKRLHAQGNSPKTLQRKLSSVR 77

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG---SQPRLAFEF 198
             F + +  E V+ NP   ++ PK      +    +++             ++    F+ 
Sbjct: 78  SFFNFLINSEIVSQNPANGIKAPKDSKRLPKVVNTDELAYLLDINPSNDIEARDIACFDL 137

Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLLAMTP 249
           L   G+R S+     ++ +  +  +I+    G    +          L     K+     
Sbjct: 138 LYSCGIRLSELSSVELKDISISQKNIRVTGKGNKQRIVYFGTKTLSNLNRWL-KIRDSLK 196

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATK-AGVNKSAHGVRKFSATISADAGATAHELM 308
              +  FI+ D + +         +  A K A  +   H +R   A+   D+      + 
Sbjct: 197 PSSDYLFISRDGKHLTNRSIQKRLEIFAQKYASRHIHPHMLRHSFASHVLDSSKDLLAVK 256

Query: 309 ATYGWKTVDQAETYTKGADRIRLG 332
              G   +   + YT   +  +L 
Sbjct: 257 DLLGHADISSTQIYTH-LNFQQLA 279


>gi|78224235|ref|YP_385982.1| tyrosine recombinase XerD subunit [Geobacter metallireducens GS-15]
 gi|78195490|gb|ABB33257.1| tyrosine recombinase XerD subunit [Geobacter metallireducens GS-15]
          Length = 294

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 47/266 (17%), Positives = 88/266 (33%), Gaps = 23/266 (8%)

Query: 85  GSLAVNSRISFESYFDQIIR--------KSGDFDYRKITTKHIRSGVESRKHTPSSAIQF 136
            +++ ++  ++ S   Q            +       +  +   + +  R HT SS  + 
Sbjct: 16  RNVSPHTLAAYRSDLAQFREFVRQETGAAAEPEGVSHLLIRRWLALLH-RDHTKSSVGRK 74

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QP 192
           L ++R  FK  +R   +  NP   V  PK++ +     + ++         E      + 
Sbjct: 75  LAAVRAFFKHLIRTGRLVKNPAELVSTPKKEKKVPYHLSIDEATALVETPKEPDILSLRD 134

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLL------ 245
           R   E L   G+R S+     +  +  +  + +   K G    V +       L      
Sbjct: 135 RAILETLYSCGVRVSELTGLNIGGIDLDDGTARVLGKGGKERIVPVGSIARAALSHYLTA 194

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWF-KAKATKAGVNK-SAHGVRKFSATISADAGAT 303
              P      F N    ++          K     A + K S H +R   AT   + GA 
Sbjct: 195 RNHPPLDAPLFTNARGGRLTPRSVRRVVDKHILRIAAMRKISPHTLRHTFATHLLEGGAD 254

Query: 304 AHELMATYGWKTVDQAETYTK-GADR 328
              +    G  ++   + YT  G DR
Sbjct: 255 LRAIQELLGHASLSTTQKYTHVGIDR 280


>gi|325143762|gb|EGC66079.1| tyrosine recombinase XerC [Neisseria meningitidis M01-240013]
          Length = 305

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 36/278 (12%), Positives = 84/278 (30%), Gaps = 24/278 (8%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD-------YRKITTKHIRSGV 123
                  Y ++      + ++  ++    +++                + ++ +   + +
Sbjct: 6   FAAHFDAYLENIVREGKSEHTVAAYRRDLEELFALLAQMPSEAEGGVPQGLSQRDFTAAL 65

Query: 124 ES---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                R     +  + L+S R    W V +  +  +P   ++ PK+     +   +E + 
Sbjct: 66  RRLSQRGLNARTLARKLSSWRQYCVWLVERGLMRADPTADIKPPKQPERVPKALPQEWLN 125

Query: 181 QFKSF-----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIIT 234
           +              +    FE +  SGLR S+        +  +   +     G     
Sbjct: 126 RMLDLPVDGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGKGRKQRQ 185

Query: 235 VELP----DGFMKL--LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK--AGVNKSA 286
           V L     +       L  T    +  F   +  +++  Q        A +   G + S 
Sbjct: 186 VPLTGKSVEALKNYLPLRQTASDGKALFTGRNGTRLSQRQIQKRLAQWAAQNGDGRHVSP 245

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           H +R   A     A      +    G  ++   + YTK
Sbjct: 246 HMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTK 283


>gi|293400524|ref|ZP_06644669.1| integrase/recombinase XerC [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291305550|gb|EFE46794.1| integrase/recombinase XerC [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 305

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 44/279 (15%), Positives = 97/279 (34%), Gaps = 31/279 (11%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIR---------SGVESRKHTPSSA--IQF 136
           + +++ +++    + +      +   +                  + R+ T  +A   + 
Sbjct: 19  SAHTKDAYQRDITEFLDFLKSENIMSLDDVDRIIVMNYVSHLRERDGRQGTMKNATVARK 78

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QP 192
           L+S+R  +++      V  NP L  + PK+          +++  F + +        + 
Sbjct: 79  LSSLRSYYRYLNEYVGVQNNPFLYFKAPKQTRRIPEFLFYDEIALFLASFDLHEAVDVRD 138

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLA---- 246
           R  FE +  SGLR S++    +  +   +NI  I   K      V   D   + L     
Sbjct: 139 RALFELMYASGLRVSEAVNLRLSDIDFHDNILHII-GKGDKQRLVPFYDLAKERLVDYIE 197

Query: 247 ------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISA 298
                 +  +  E  F+N   + + +       +  A K  ++     H  R   AT   
Sbjct: 198 HVRPKWVNTLQHEYVFVNQKGKPLTSRGVQYRMELAAKKCHLHLHIHPHMFRHSFATHLL 257

Query: 299 DAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNS 336
           D GA    +    G  ++   + Y     DR++   +++
Sbjct: 258 DNGADLRVVQELLGHASLSTTQIYVHVTQDRLKSAYEHA 296


>gi|118498082|ref|YP_899132.1| site-specific recombinase [Francisella tularensis subsp. novicida
           U112]
 gi|194323307|ref|ZP_03057091.1| phage integrase family protein [Francisella tularensis subsp.
           novicida FTE]
 gi|254373434|ref|ZP_04988922.1| integrase/recombinase XerC [Francisella tularensis subsp. novicida
           GA99-3549]
 gi|254374894|ref|ZP_04990375.1| hypothetical protein FTDG_01073 [Francisella novicida GA99-3548]
 gi|118423988|gb|ABK90378.1| site-specific recombinase [Francisella novicida U112]
 gi|151571160|gb|EDN36814.1| integrase/recombinase XerC [Francisella novicida GA99-3549]
 gi|151572613|gb|EDN38267.1| hypothetical protein FTDG_01073 [Francisella novicida GA99-3548]
 gi|194322671|gb|EDX20151.1| phage integrase family protein [Francisella tularensis subsp.
           novicida FTE]
          Length = 292

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 38/264 (14%), Positives = 93/264 (35%), Gaps = 18/264 (6%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI---RSGVESRKHTPSSAIQFLTSMR 141
            + +  +  +++    Q+ +   D +   +T   I      + ++ ++P +  + L+S+R
Sbjct: 18  KNYSQETINNYQRDLLQLNQALSDKNIISLTHSDILIWIKKLHAQGNSPKTLQRKLSSVR 77

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG---SQPRLAFEF 198
             F + +  E V+ NP   ++ PK      +    +++             ++    F+ 
Sbjct: 78  SFFNFLINSEIVSQNPANGIKAPKDSKRLPKVVNTDELAYLLDVNPSNDIEARDIACFDL 137

Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLLAMTP 249
           L   G+R S+     ++ +  +  +I+    G    +          L     K+     
Sbjct: 138 LYSCGIRLSELSSVELKDISISQKNIRVTGKGNKQRIVYFGTKTLSNLNRWL-KIRDSLK 196

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATK-AGVNKSAHGVRKFSATISADAGATAHELM 308
              +  FI+ D + +         +  A K A  +   H +R   A+   D+      + 
Sbjct: 197 PSSDYLFISRDGKHLTNRSIQKRLEIFAQKYASRHIHPHMLRHSFASHVLDSSKDLLAVK 256

Query: 309 ATYGWKTVDQAETYTKGADRIRLG 332
              G   +   + YT   +  +L 
Sbjct: 257 DLLGHADISSTQIYTH-LNFQQLA 279


>gi|300113125|ref|YP_003759700.1| tyrosine recombinase XerC [Nitrosococcus watsonii C-113]
 gi|299539062|gb|ADJ27379.1| tyrosine recombinase XerC [Nitrosococcus watsonii C-113]
          Length = 300

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 37/272 (13%), Positives = 90/272 (33%), Gaps = 21/272 (7%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYF---DQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
            I ++     +   L+  + +S+            ++G  +++ +  + +R+ V +   T
Sbjct: 8   WIQKFLLHLQYERGLSPQTVVSYRRDLAKVMAFCGRNGIGNWQALDAQKVRALVAAYHQT 67

Query: 130 P---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
                S  + L+++R  + +  R+  V  NP   +  P+ K         +   Q  +  
Sbjct: 68  GLSGRSIQRLLSALRSFYVYLQRENIVDHNPAQGISAPRGKRALPPTLDVDQAAQLLNTK 127

Query: 187 SEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-VELPDGFM 242
             G    + +   E    SGLR ++     +  L  +   ++    G     V L     
Sbjct: 128 PCGDLLLRDQAILELFYSSGLRLAELVGLNLSALDLDTALVRVVGKGAKTREVPLGRRAK 187

Query: 243 KLLAMTPI--------GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKF 292
             L              +E  F+    ++++        +    + G + +   H +R  
Sbjct: 188 AALLAWLPIRAGWISQSQEAVFVTRRGRRLSPRAVQKRLRLWGLRQGFDVAIHPHRLRHA 247

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324
            A+   ++      +    G   +   + YT 
Sbjct: 248 FASHLLESSGDLRAVQELLGHADISTTQIYTH 279


>gi|289628758|ref|ZP_06461712.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. aesculi str. NCPPB3681]
 gi|330870488|gb|EGH05197.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. aesculi str. 0893_23]
          Length = 320

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 54/277 (19%), Positives = 106/277 (38%), Gaps = 32/277 (11%)

Query: 84  WGSLA-VNSRISFESYFDQIIRKSGDF---DYRKITTKHI---RSGVESRKHTPSSAIQF 136
           + +L    +R ++++         G     D+R++T  H+   R+ +E R    ++  + 
Sbjct: 33  FANLDNPRTRRAYQNDLTDFSAFIGLASADDFRQVTRSHVLAWRANLEQRGLAGATIRRK 92

Query: 137 LTSMRVLFKWAVRQE-YVAINPCLSVERPKRKT-EGIRPWTKED-----MQQFKSFWSEG 189
           L ++  LF   +        NP   V+RPK ++ EG  P   +      ++       +G
Sbjct: 93  LAALASLFDHLLESNAIAGGNPVHGVKRPKIESNEGKTPALGDHQAKALLEAPDESTLKG 152

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKT-QKTGTIITVELPDG------ 240
            + R     LLY GLR  ++ +  V  +  +  I  +K   K G +  + L         
Sbjct: 153 LRDRAMLAVLLYHGLRREEAAQLQVSDIQERRGIQHLKIHGKGGKVRYLPLHPVAAGRIH 212

Query: 241 --FMKLLAMTPIGKETFFINNDKQK----MNATQFSIWFKAKATKAGV---NKSAHGVRK 291
               +        K   FI+   +     ++A       +A   KAG+       HG+R 
Sbjct: 213 WYLERSGHHLGDKKVPLFISLRGKSTGASISANGIYTVVEAYTKKAGIEVAGLGVHGLRA 272

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
            +AT + +  A   ++ A  G   +   + Y +  +R
Sbjct: 273 TAATNALEHEADIAKVQAWLGHANISTTKIYDRRENR 309


>gi|300714802|ref|YP_003739605.1| Tyrosine recombinase XerC [Erwinia billingiae Eb661]
 gi|299060638|emb|CAX57745.1| Tyrosine recombinase XerC [Erwinia billingiae Eb661]
          Length = 302

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 36/259 (13%), Positives = 80/259 (30%), Gaps = 19/259 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRKHTPSSAIQFLT 138
             L+  ++I+++      +    +              + + +        P+S    L+
Sbjct: 22  RQLSPLTQINYQRQLAACLALLTEMKLTAWDKLDAAQVRSLAARSRRGGLKPASLALRLS 81

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLA 195
           ++R    W + Q  +  NP   V  P+      +    +++ Q            + R  
Sbjct: 82  ALRSFLDWQISQGVLKANPAKGVATPRAPRHLPKNIDVDEVSQLLDIDLNDPLAVRDRAM 141

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLAMT------ 248
            E +  +GLR S+       HL           K      + +    ++ +         
Sbjct: 142 LEIMYGAGLRLSELVGIDTGHLDLASGEVWVVGKGSKERRLPIGRTAVQWMEHWLEMREL 201

Query: 249 -PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAH 305
                +  F++   ++M+A      F     K GV  +   H +R   AT   ++     
Sbjct: 202 FAPEDQAVFLSKYGKRMSARNVQKRFAEWGAKQGVSSHIHPHKLRHSFATHMLESSGDLR 261

Query: 306 ELMATYGWKTVDQAETYTK 324
            +    G   +   + YT 
Sbjct: 262 AVQELLGHANLSTTQIYTH 280


>gi|225351391|ref|ZP_03742414.1| hypothetical protein BIFPSEUDO_02985 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157735|gb|EEG71018.1| hypothetical protein BIFPSEUDO_02985 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 317

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 39/292 (13%), Positives = 92/292 (31%), Gaps = 42/292 (14%)

Query: 75  ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS------GVESRK 127
           I ++         L+  +  ++ +   +  +   D     I     +        ++   
Sbjct: 8   IRQFLAHIDVERGLSKATVSAYGADLKKYRQWLADQGVGGIAAVTTQDVERYIVFLDESG 67

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            +  S  + L S+  L ++AV +  V  +    V+ PK  +      T +++ +      
Sbjct: 68  ESSRSKARRLASIHALHRFAVNEHIVVDDVSAQVKAPKGVSTLPDVLTVDEVARLLDSIP 127

Query: 188 EGS------------------QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQK 228
                                + +   EF+   G R S++C A +  +  +   +    K
Sbjct: 128 VSQNREHDGVVSEFPDDPVMLRDKALLEFMYAIGARVSEACGANLDDVDVDGRIARLMGK 187

Query: 229 TGTIITVELPDGFMKLL--------------AMTPIGKETFFINNDKQKMNATQFSIWFK 274
                 V +     + +              +  P+ +   F+N   ++++        +
Sbjct: 188 GSKQRLVPVGSYACEAIIRYLHAGRPKLESKSKGPVERRALFLNKRGKRLSRQSVWEIIR 247

Query: 275 AKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
               +A ++K    H +R   AT     GA    +    G  +V   + YT 
Sbjct: 248 GAGERAHIDKPLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTH 299


>gi|262190134|ref|ZP_06048420.1| tyrosine recombinase XerC [Vibrio cholerae CT 5369-93]
 gi|262033988|gb|EEY52442.1| tyrosine recombinase XerC [Vibrio cholerae CT 5369-93]
          Length = 311

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 38/278 (13%), Positives = 94/278 (33%), Gaps = 21/278 (7%)

Query: 68  PTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSGV 123
           P  L   +  +    H    L++ ++ +++   + + +   + G  ++ ++    +R  V
Sbjct: 10  PDALAQPLERFYAYLHTEKGLSLYTQRNYKQQLETMTQYLVQVGLSNWSQLDAAWVRQLV 69

Query: 124 ESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
              K      SS    L+S+R    + + +  +  NP   V  P+++    +    ++M 
Sbjct: 70  MQGKRQGMKASSIATRLSSLRSFLDFLILRGELEANPAKGVSAPRKQRTLPKNLDVDEMA 129

Query: 181 QFKSFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---IT 234
           Q            + R   E +  +GLR ++     V+ +  +   I+    G     + 
Sbjct: 130 QLLEVTDDDPLSIRDRAIMELMYGAGLRLAELVSIDVKDVNLSEGEIRVIGKGNKERKVW 189

Query: 235 V------ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286
                   +         +    +   F++    +++             K  V  + S 
Sbjct: 190 FAGQAQEWVGKWLKLRSQLADSAETALFVSKLGTRISHRSVQKRMAEWGQKQAVASHISP 249

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           H +R   AT   ++      +    G + +   + YT 
Sbjct: 250 HKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTH 287


>gi|170724856|ref|YP_001758882.1| tyrosine recombinase XerC [Shewanella woodyi ATCC 51908]
 gi|169810203|gb|ACA84787.1| tyrosine recombinase XerC [Shewanella woodyi ATCC 51908]
          Length = 299

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 39/271 (14%), Positives = 92/271 (33%), Gaps = 19/271 (7%)

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVESRKHTPSSAI 134
             SA    L+ ++  ++    +++ +   D        +   +   S +  R  +P S  
Sbjct: 12  YLSAE-RQLSKHTVRNYLFELNRVDQLLDDSTSWLSVSREQIQSAMSQLHRRGLSPRSLS 70

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR---PWTKEDMQQFKSFWSEGSQ 191
             L++++   ++ +R+  +  NP +++  PK+     +   P +   + +         +
Sbjct: 71  LTLSAVKQFCEFLLREGVIQTNPAINLSAPKQNKPLPKNMDPDSVSHLLEIDGDDPLSLR 130

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELP-------DGFMK 243
            +   E    SGLR ++     +  +Q +        K G    + +        D ++ 
Sbjct: 131 DKAIMELFYSSGLRLAELAALNISDIQFSERLVKVLGKGGKERILPIGKMAISAIDKWLA 190

Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAG 301
              + P   +  FI N   ++              +  +N     H +R   AT   ++ 
Sbjct: 191 CRRLIPCEHDALFITNKGTRLAHRSIQARLSKWGQEQALNMRVHPHKLRHSFATHMLESS 250

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           A    +    G   +   + YT   D   L 
Sbjct: 251 ADLRAVQELLGHANLSTTQIYT-SLDFQHLA 280


>gi|300854312|ref|YP_003779296.1| putative integrase/recombinase XerD [Clostridium ljungdahlii DSM
           13528]
 gi|300434427|gb|ADK14194.1| predicted integrase/recombinase XerD [Clostridium ljungdahlii DSM
           13528]
          Length = 292

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 39/282 (13%), Positives = 102/282 (36%), Gaps = 20/282 (7%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF-----DYRKITTKHIRSGVESR 126
             L+  Y ++     ++ N+  ++     +      D      +   ++       ++  
Sbjct: 2   DGLLLGYEETLEKKHMSKNTMDAYVRDITRFYNFIKDREENLENVEVVSIMAYVQYLQKE 61

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185
               SS ++ + S+R  +K+ + +  +  NP L  + PK + +  +  T E++ +     
Sbjct: 62  GRAISSIVRNIVSLRNFYKYLMLKGVLNENPVLYYQIPKVEHKVPKILTIEEVDKLLEAP 121

Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK-TGTIITVELPDGF 241
               ++G + +   E +  +G++  +     +  +   +  ++ +        V +    
Sbjct: 122 NLDTNKGIRDKAMLEVMYAAGMKVMELLSLTIYDIDLKLSYVRCRSLKEEERIVPIGSVA 181

Query: 242 MKLLAMTPIGK--------ETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRK 291
           +K L      +        +  F+N    +M+   F    K  A +A ++K+  A  +R 
Sbjct: 182 VKYLKNYLNIRHKLNIYNLDVLFLNLRGVQMSRQGFWKIVKYYAKEANIDKNINAFTLRH 241

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
             A      GA    +    G K +   + Y+    R ++  
Sbjct: 242 SFAVHLLQNGADIKSVQELLGHKELSATQIYSSVIKRNKIAQ 283


>gi|296164601|ref|ZP_06847168.1| integrase/recombinase XerD [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295900020|gb|EFG79459.1| integrase/recombinase XerD [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 313

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 44/274 (16%), Positives = 85/274 (31%), Gaps = 35/274 (12%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH----IRSGVESRKHTPSS-------- 132
             +A N+  S+     +  +   D     +            V  R+  P +        
Sbjct: 21  RGVAANTLSSYRRDLRRYTKHLSDRGIHDLAKVGEDDVSEFLVALRRGDPDAGTAALSAV 80

Query: 133 -AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----- 186
            A + L ++R L ++A  +    ++   +V  P       +  T + +            
Sbjct: 81  SAARALIAVRGLHRFAAAEGLAELDVARAVRPPTPGRRLPKSLTIDQVLALLEGAGGDSA 140

Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFM 242
                  + R   E L  +G R S++    V  +       +   K G    V +    +
Sbjct: 141 SDGPLTLRNRALLELLYSTGARISEAVGLDVDDVDSRARSVLLRGKGGKQRLVPVGRPAV 200

Query: 243 KLL-----------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGV 289
           + L           A    G    F+N    +++        +  A +AG+    S H +
Sbjct: 201 QALDAYLVRGRPDLARRGRGTPAIFLNVRGGRLSRQSAWQVLQDAAERAGISSGVSPHML 260

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           R   AT   + GA    +    G  +V   + YT
Sbjct: 261 RHSFATHLLEGGADVRVVQELLGHASVTTTQIYT 294


>gi|315500433|ref|YP_004089236.1| integrase family protein [Asticcacaulis excentricus CB 48]
 gi|315418445|gb|ADU15085.1| integrase family protein [Asticcacaulis excentricus CB 48]
          Length = 304

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 41/290 (14%), Positives = 96/290 (33%), Gaps = 35/290 (12%)

Query: 85  GSLAVNSRISFESYFDQII-----RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
            + +  +R ++      +         G     +       + +++R    S+  +   +
Sbjct: 17  RNASPRTREAYGHDLLDLRNHAGIDADGLLTLNEGDIAGFFAALDARGLASSTLQRKRAA 76

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-----GSQPRL 194
           +R  +++ VR+     +P   +   K+     +  +++++    +          ++ + 
Sbjct: 77  VRQFYRFCVREGLSDNDPSRKIAAAKKGRPLPKILSRQEVDALIAAADAKDAHQATRLQC 136

Query: 195 AFEFLLYSGLRCSDSCRAGVQHL-QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE 253
             E    SG+R S+     +  + ++  + I   K GT   V L       +      + 
Sbjct: 137 LIEIAYASGMRVSEIVALRLDAVQKDPAYLIVKGKGGTERLVPLNPSARAAIKDYLDIRP 196

Query: 254 TFFINNDK------------QKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISA 298
            F    DK              +   +        A +AG++    S H +R   AT   
Sbjct: 197 LFLNAKDKANPYLFCSRGAEGHLTRRRVGQLLDEAALEAGIDPARVSPHVLRHAFATHLL 256

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
           + GA    +    G   +   + YT  A         + R+  VV++  P
Sbjct: 257 EGGADLRVVQTLLGHADISTTQVYTHVA---------TERLKEVVETHHP 297


>gi|77163851|ref|YP_342376.1| site-specific tyrosine recombinase XerC [Nitrosococcus oceani ATCC
           19707]
 gi|254435837|ref|ZP_05049344.1| tyrosine recombinase XerC [Nitrosococcus oceani AFC27]
 gi|76882165|gb|ABA56846.1| tyrosine recombinase XerC subunit [Nitrosococcus oceani ATCC 19707]
 gi|207088948|gb|EDZ66220.1| tyrosine recombinase XerC [Nitrosococcus oceani AFC27]
          Length = 300

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 39/272 (14%), Positives = 92/272 (33%), Gaps = 21/272 (7%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRS---GVESR 126
            I ++     +   L+  + +S+     +      ++G  +++++  + +R+        
Sbjct: 8   WIQKFFTHLQYERGLSPQTVVSYRRDLAKAIAFCGRNGIGNWQELDAQRVRALVVAHHQA 67

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             +  S  + L+++R  + +  R+  V  NP   +  PK K         +   Q  +  
Sbjct: 68  GLSGRSIQRLLSALRSFYVYLQRENIVDHNPAQGISAPKGKRALPPSLDVDQTAQLLNTQ 127

Query: 187 S---EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-VELPDGFM 242
                  + +   E    SGLR ++     +  L  +   ++    G     V L     
Sbjct: 128 PCSDLLLRDQAILELFYSSGLRLAELVGLNLSALDLDTALVRVVGKGAKTREVPLGRRAK 187

Query: 243 -KLLAMTPIGK-------ETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKF 292
             LLA  P+         E  FI    ++++        +    + G + +   H +R  
Sbjct: 188 VALLAWLPVRAGWINQSQEAVFITRHGRRLSPRAVQKRLRLWGLRQGFDVAIHPHRLRHA 247

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324
            A+   ++      +    G   +   + YT 
Sbjct: 248 FASHLLESSGDLRAVQELLGHADISTTQIYTH 279


>gi|148284918|ref|YP_001249008.1| phage-related integrase [Orientia tsutsugamushi str. Boryong]
 gi|148284938|ref|YP_001249028.1| phage-related integrase [Orientia tsutsugamushi str. Boryong]
 gi|148285074|ref|YP_001249164.1| phage-related integrase [Orientia tsutsugamushi str. Boryong]
 gi|146740357|emb|CAM80790.1| phage-related integrase [Orientia tsutsugamushi str. Boryong]
 gi|146740377|emb|CAM80821.1| phage-related integrase [Orientia tsutsugamushi str. Boryong]
 gi|146740513|emb|CAM81084.1| phage-related integrase [Orientia tsutsugamushi str. Boryong]
          Length = 414

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 51/287 (17%), Positives = 98/287 (34%), Gaps = 28/287 (9%)

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKSAH------WGSLAVN----SRISFESYFDQII 103
               R      +    T K L  +Y +         W   A      ++  +E    +I 
Sbjct: 108 ENENRIKERERKANDITFKELCYKYIEEYAKIYTINWKENADRVHTYAQALYEKKISKIR 167

Query: 104 RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163
               +  +  I+ +   +          +A   L ++R +F  A++   +  NP L +E+
Sbjct: 168 MSDIEPIFNDISKEGKYA----------TANALLATLRTIFNKAIKWGLIENNPTLGIEQ 217

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQ--N 219
            K +    R  + ++M +F       + P  R      LY+G R S+       ++    
Sbjct: 218 HKLQARERR-LSYDEMGRFLQVLCGEASPLIRDFALLALYTGARKSNVLEMEWDNIDFER 276

Query: 220 NIFSIKTQKTGTIITVELPDGFMKLLAMTP-IGKETFFINNDKQKMNATQFSI-WFKAKA 277
            I+ I   K G    + L D  M++L     I    + + +   +          +K   
Sbjct: 277 KIWHIPKTKNGKAQNIPLTDEAMEILQARKLISTSKWVLPSSTSESGHLSHPNTAWKIIC 336

Query: 278 TKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
            KA + N   H +R+  A+   DAG +   +         +    YT
Sbjct: 337 EKASIKNFRIHDLRRTFASCMWDAGESQRTISIALNHINPNSTIPYT 383


>gi|57234341|ref|YP_181631.1| phage integrase family site specific recombinase [Dehalococcoides
           ethenogenes 195]
 gi|57234884|ref|YP_181043.1| phage integrase family site specific recombinase [Dehalococcoides
           ethenogenes 195]
 gi|57234923|ref|YP_181020.1| phage integrase family site specific recombinase [Dehalococcoides
           ethenogenes 195]
 gi|57224789|gb|AAW39846.1| site-specific recombinase, phage integrase family [Dehalococcoides
           ethenogenes 195]
 gi|57225332|gb|AAW40389.1| site-specific recombinase, phage integrase family [Dehalococcoides
           ethenogenes 195]
 gi|57225371|gb|AAW40428.1| site-specific recombinase, phage integrase family [Dehalococcoides
           ethenogenes 195]
          Length = 319

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 50/312 (16%), Positives = 111/312 (35%), Gaps = 30/312 (9%)

Query: 58  REYINSPRKKPTTLKWL------------ISEYRKSAHWGSLAVNSRISFESYFDQIIR- 104
           ++ + +P+    T++ L            +  +  +     L+  +   +     QII  
Sbjct: 2   KDTLIAPQAHDRTIRKLDTLIVSTGLRRHLEAFLLACRVEDLSRRTIFDYRQKIGQIIDY 61

Query: 105 --KSGDFDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
               G  D +++T  HIR  + +++ T  P S   +  S++V F W  R+  ++ +P   
Sbjct: 62  MVALGLTDPKEVTASHIRGFLLTKQETCQPVSVHGYYRSIKVFFNWLTREGVISFSPMAP 121

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216
           +  PK   + IRP+  ++++              + R     L+ +G+R  +     +  
Sbjct: 122 IRPPKVPKKIIRPYYPDELRSLLLACEGRGILSLRDRAIMLVLIDNGIRLGELANINISD 181

Query: 217 LQNNIFSIKTQKTGTIITV-----ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI 271
           +  +  +I     G    V            K L        + ++  D + +      +
Sbjct: 182 IDVDRETISVWGKGRKQRVVGISKRTQMAVYKYLHARVDNNPSLWVTTDSKTLTPKGIYL 241

Query: 272 WFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
                  +AG+     S H  R  +AT+S   G    ++ +  G  T+     Y     +
Sbjct: 242 AIHRLGERAGLKDVRNSPHTFRHTAATLSIKNGGDLFQVQSMLGHTTLAMTRRYAASL-Q 300

Query: 329 IRLGIKNSRRIS 340
                +  ++ S
Sbjct: 301 SEAAAEAHKKFS 312


>gi|237785754|ref|YP_002906459.1| integrase/recombinase [Corynebacterium kroppenstedtii DSM 44385]
 gi|237758666|gb|ACR17916.1| integrase/recombinase [Corynebacterium kroppenstedtii DSM 44385]
          Length = 327

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 53/310 (17%), Positives = 105/310 (33%), Gaps = 33/310 (10%)

Query: 52  TGSTPKREYINSPRKKPTTLKW--LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD 108
           TGS+  R  + S ++   + +W  +I +Y     +    + N+  ++ +    ++   G 
Sbjct: 10  TGSSKDRNDVASDKEPAVSAQWDGIIEDYLDFLTFTKGRSENTVKAYRNDLHSLVD--GL 67

Query: 109 FDYRKITTKHIRSGVE---SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165
               ++T  HIR          H  SS  +  +++R   +W   +  V  +P   +  P+
Sbjct: 68  TTVDQLTLHHIRRWQADALRAGHARSSLSRRASAVRNFGRWLEHRGIVQSDPASRLSSPR 127

Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGS--------QPRLAFEFLLYSGLRCSDSCRAGVQHL 217
                 R    +   +       G+        +     EF+  +G+R S+ CR  +  L
Sbjct: 128 PDKTLPRVLAADQTAEILHNLEVGAEEEDPIALRDLAMVEFMYGTGVRVSELCRLNIGDL 187

Query: 218 QNNIFSIK-TQKTGTIITVELPDGFMKLLAMT--------------PIGKETFFINNDKQ 262
                ++    K      V   +     L                     E  F+     
Sbjct: 188 DFARQTVTILGKGNKQRVVPFGESAAHALKRWIDIGRPAIAANGHHKDADEAVFLGKRGG 247

Query: 263 KMNATQFSIWFKAKA-TKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
           +++  Q          T +G + S H +R  +AT   + GA    +    G  ++   + 
Sbjct: 248 RIDPRQVRTVVHQATSTVSGGDVSPHALRHSAATDVLEGGADLRVVQEMLGHASLATTQI 307

Query: 322 YTKGADRIRL 331
           YT   D  RL
Sbjct: 308 YTH-VDSERL 316


>gi|301155134|emb|CBW14598.1| site-specific tyrosine recombinase [Haemophilus parainfluenzae
           T3T1]
          Length = 295

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 40/271 (14%), Positives = 93/271 (34%), Gaps = 20/271 (7%)

Query: 74  LISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESR 126
           L+++Y         ++ ++  +++   D I+    +   +          + I +    +
Sbjct: 4   LLNQYWDYLRIERQVSPHTLTNYQHQLDAILAILAEKGIQHWQQVNPSVVRLILAESRKQ 63

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS-- 184
                S    L+++R  F + V+Q  + +NP   +  PK+     +    E +Q+  S  
Sbjct: 64  GLKEKSLALRLSALRQFFSYLVQQGQMKVNPATGISAPKQGKHLPKNIDAEQVQKLLSND 123

Query: 185 -FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPD--- 239
                  + R   E +  SGLR S+     +  +   +  ++   K      V       
Sbjct: 124 SKDPIDLRDRAMMELMYSSGLRLSELQGLNLNSINTRVREVRVIGKGNKERIVPFGRYAS 183

Query: 240 -GFMKLLAMTP---IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFS 293
               + L + P      +  F++    ++         +    + G+N   + H +R   
Sbjct: 184 HAIQQWLKVRPLFNPKDDALFVSQQGNRLTHRSIQKRMETWGIRQGLNSHLNPHKLRHSF 243

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324
           AT   +A +    +    G   +   + YT 
Sbjct: 244 ATHMLEASSDLRAVQELLGHSNLSTTQIYTH 274


>gi|56551494|ref|YP_162333.1| integrase family protein [Zymomonas mobilis subsp. mobilis ZM4]
 gi|56543068|gb|AAV89222.1| integrase family protein [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 307

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 47/281 (16%), Positives = 97/281 (34%), Gaps = 17/281 (6%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132
           LI  + +        + N+ +++ S      ++  +   +  T      GV    +  ++
Sbjct: 16  LILRFLEMMAAESGSSPNTLMAYGSDLRLASQQLENGLVKADTDDLASLGVVWSDYARNT 75

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF-------KSF 185
             +   +++  +++ + +     +P  S+          +  T  ++++           
Sbjct: 76  VARKSAALKHFYRFLLEEGMRTDDPSSSLPHAGISRNLPKILTTVEVERLFVTLQQRYER 135

Query: 186 WSEGSQPRLA--FEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPDGFM 242
            +  S  RL    E L  SGLR S+      Q       F I   K G    V + D   
Sbjct: 136 AATPSTLRLIALVELLYGSGLRASELVSLPKQAFIRKQPFLILKGKGGRERLVPISDRAT 195

Query: 243 KLLAMTPI---GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATI 296
             +A   +    K  +   + K  ++  +     K  A +A + +   S H +R   AT 
Sbjct: 196 DAVAAWLVHVPEKSLWLFPSGKGHISRIRLYQLIKELAVEADLPRERVSPHVLRHAFATH 255

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
             + GA    L    G   +   + YT    +  + + NSR
Sbjct: 256 LLEGGADLRVLQLLLGHADISTTQIYTHVDSQKLVELVNSR 296


>gi|56708541|ref|YP_170437.1| integrase/recombinase XerC [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|89255722|ref|YP_513083.1| integrase/recombinase XerC [Francisella tularensis subsp.
           holarctica LVS]
 gi|110671012|ref|YP_667569.1| integrase/recombinase XerC [Francisella tularensis subsp.
           tularensis FSC198]
 gi|115314216|ref|YP_762939.1| integrase/recombinase XerC [Francisella tularensis subsp.
           holarctica OSU18]
 gi|156501676|ref|YP_001427741.1| phage integrase family protein [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|224457717|ref|ZP_03666190.1| phage integrase family protein [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254367099|ref|ZP_04983133.1| integrase/recombinase xerC [Francisella tularensis subsp.
           holarctica 257]
 gi|254371168|ref|ZP_04987170.1| site-specific recombinase [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254875393|ref|ZP_05248103.1| integrase/recombinase xerC [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|290953429|ref|ZP_06558050.1| integrase/recombinase XerC [Francisella tularensis subsp.
           holarctica URFT1]
 gi|295313310|ref|ZP_06803933.1| integrase/recombinase XerC [Francisella tularensis subsp.
           holarctica URFT1]
 gi|56605033|emb|CAG46136.1| Integrase/recombinase XerC [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|89143553|emb|CAJ78731.1| Integrase/recombinase XerC [Francisella tularensis subsp.
           holarctica LVS]
 gi|110321345|emb|CAL09519.1| Integrase/recombinase XerC [Francisella tularensis subsp.
           tularensis FSC198]
 gi|115129115|gb|ABI82302.1| integrase/recombinase XerC [Francisella tularensis subsp.
           holarctica OSU18]
 gi|134252923|gb|EBA52017.1| integrase/recombinase xerC [Francisella tularensis subsp.
           holarctica 257]
 gi|151569408|gb|EDN35062.1| site-specific recombinase [Francisella tularensis subsp. tularensis
           FSC033]
 gi|156252279|gb|ABU60785.1| phage integrase family protein [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|254841392|gb|EET19828.1| integrase/recombinase xerC [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|282159761|gb|ADA79152.1| integrase/recombinase XerC [Francisella tularensis subsp.
           tularensis NE061598]
          Length = 292

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 38/264 (14%), Positives = 93/264 (35%), Gaps = 18/264 (6%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI---RSGVESRKHTPSSAIQFLTSMR 141
            + +  +  +++    Q+ +   D +   +T   I      + ++ ++P +  + L+S+R
Sbjct: 18  KNYSQETINNYQRDLLQLNQALSDKNIISLTHSDILIWIKKLHAQGNSPKTLQRKLSSVR 77

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG---SQPRLAFEF 198
             F + +  E V+ NP   ++ PK      +    +++             ++    F+ 
Sbjct: 78  SFFNFLINSEIVSQNPANGIKAPKDSKRLPKVVNTDELAYLLDINPSNDIEARDIACFDL 137

Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLLAMTP 249
           L   G+R S+     ++ +  +  +I+    G    +          L     K+     
Sbjct: 138 LYSCGIRLSELSSVELKDISISQKNIRVTGKGNKQRIVYFGTKTLSNLNRWL-KIRDSLK 196

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATK-AGVNKSAHGVRKFSATISADAGATAHELM 308
              +  FI+ D + +         +  A K A  +   H +R   A+   D+      + 
Sbjct: 197 PSSDYLFISRDGKHLTNRSIQKRLEIFAQKYASRHIHPHMLRHSFASHVLDSSKDLLAVK 256

Query: 309 ATYGWKTVDQAETYTKGADRIRLG 332
              G   +   + YT   +  +L 
Sbjct: 257 DLLGHADISSTQIYTH-LNFQQLA 279


>gi|84393557|ref|ZP_00992311.1| tyrosine recombinase [Vibrio splendidus 12B01]
 gi|84375836|gb|EAP92729.1| tyrosine recombinase [Vibrio splendidus 12B01]
          Length = 310

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 39/270 (14%), Positives = 93/270 (34%), Gaps = 26/270 (9%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQI--------IRKSGDFDYRKITTKHIRSGVESRKH 128
           EY +S     L+++++ +++   + +        ++  G  D   +     +   E  K 
Sbjct: 22  EYLRSE--KGLSLHTQRNYKQQLETMAAHLVTLGLKDWGQVDAAWVRQLASKGMREGMKA 79

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF--- 185
             SS    L+S+R  F + V +  +  NP   V  P+++    +    +++ Q       
Sbjct: 80  --SSIATRLSSLRSFFDFLVLRGEMTANPAKGVSAPRKQRPLPKNLDVDEVGQLLDVNED 137

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------E 236
                + R   E +  +GLR ++     ++ +      I+    G               
Sbjct: 138 DPLSIRDRAMMEVMYGAGLRLAELVGINLKDVLGRQGEIRVIGKGDKERKAPFSGLAKEW 197

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294
           +         +   G++  F++    +++        +    K  V  + S H +R   A
Sbjct: 198 VDKWLKVRGDLASPGEKALFVSKLGTRISHRSVQKRMEEWGKKQSVASHISPHKLRHSFA 257

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324
           T   ++      +    G + +   + YT 
Sbjct: 258 THVLESSQNLRAVQELLGHENISTTQIYTH 287


>gi|237737422|ref|ZP_04567903.1| DNA integration/recombination/invertion protein [Fusobacterium
           mortiferum ATCC 9817]
 gi|229421284|gb|EEO36331.1| DNA integration/recombination/invertion protein [Fusobacterium
           mortiferum ATCC 9817]
          Length = 350

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 52/328 (15%), Positives = 124/328 (37%), Gaps = 23/328 (7%)

Query: 26  RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYI-----NSPRKKPTTLKWLISEYRK 80
           RK    R+   Y  +   I  Y+         +E +     N    K  T K +   + +
Sbjct: 24  RKPRAVRVTTRYTLDCKQIRKYIGTYETKREAQESLFEYLKNPKLYKKITFKEITDLWFE 83

Query: 81  SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSM 140
           S      +  +  + +    + +    D     I   H++  ++    + S      + +
Sbjct: 84  SYKKKIGSPKTLETNKYRL-RFLEPLNDMQITDIKLYHLQKLIDEIDTSWSFKNGCKSVL 142

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKT-EGIRPWTKEDMQQF------KSFWSEGSQPR 193
            ++F++A + ++++ N    +E  K++     + +T+++++        K++  + +   
Sbjct: 143 NMIFEYAFKNDFISTNKVKFIELGKKEKVIERKIFTQKEIEILWENLNSKTYHGKYTY-- 200

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTII-TVELPDGFMKL-LAMTP 249
                L+Y+G+R  +      + +   N    ++  KT   + T+ +      L      
Sbjct: 201 -IILILIYTGMRIGELFNLKTEDIDLENRTIKVRVSKTSAGVRTIPIFSKIFNLFKDNLI 259

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELM 308
           IG+E F   +   +++   F   FK    + G+   + H  R   AT+  +A A +  ++
Sbjct: 260 IGQEYFVKGDTTTQLSYATFKPRFKKLLKELGIQEHTIHDTRHTFATMLNNANANSTSII 319

Query: 309 ATYGWKTVDQAE-TYT-KGADRIRLGIK 334
              G       E  YT K  + +R  ++
Sbjct: 320 RLIGHSNFSTTENIYTHKDTEELRKAME 347


>gi|60280069|gb|AAX16408.1| integrase [uncultured murine large bowel bacterium BAC 54B]
          Length = 419

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 52/317 (16%), Positives = 105/317 (33%), Gaps = 38/317 (11%)

Query: 34  RLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRI 93
           RL    E+ FI  +          +    + +          + Y +   +       + 
Sbjct: 114 RLKKDGENDFIKYFRKHWENELYSKPVRTTYK----------TSYNRFMRFLEATPRFQR 163

Query: 94  SFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYV 153
            + S+           +          +    +      A +     R +   A+ +  +
Sbjct: 164 -YTSFLR--------MELITPEMVTSFTDYLKKVAKGEGAHKSYYMFRTVILHAIEEGLM 214

Query: 154 AINPCLSVERPK-RKTEGIRPWTKEDMQQFKSFWSEG--SQPRLAFEFLLYSGLRCSDSC 210
             NPC  +   +   T      T +++++  +   EG  +  + AF F  ++G+R  D+ 
Sbjct: 215 KKNPCKGIVIHRDVNTLKKEILTMDEIKRLAATHYEGEDTALQRAFLFCCFTGIRWCDTV 274

Query: 211 RAGVQHLQ--NNIFSIKTQKT-----GTIITVELPDGFMKLL--AMTPIGKETFFINNDK 261
                ++     I     QKT      + +T+ L    +KL+   +    ++ F I    
Sbjct: 275 SLTYANVDFSAKILRFNQQKTEGRSAHSGVTIPLSPTLLKLIGNPIQHTSEKIFNITCY- 333

Query: 262 QKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
           +    T+   W K     AG+NK+   H  R   A     AGA    + +  G  ++   
Sbjct: 334 RTTAITRLQKWVK----AAGINKTITWHCARHSFAVNVLGAGANIKTVASLMGHSSIKMT 389

Query: 320 ETYTKGADRIRLGIKNS 336
           E Y    D+ +    NS
Sbjct: 390 EKYLHVIDQQKQDAINS 406


>gi|257063600|ref|YP_003143272.1| tyrosine recombinase XerD [Slackia heliotrinireducens DSM 20476]
 gi|256791253|gb|ACV21923.1| tyrosine recombinase XerD [Slackia heliotrinireducens DSM 20476]
          Length = 309

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 42/262 (16%), Positives = 84/262 (32%), Gaps = 26/262 (9%)

Query: 91  SRISFESYFDQIIRKSGDF---DYRKITTKHIRSG---VESRKHTPSSAIQFLTSMRVLF 144
           +  S+ +  +  I   G+    D   IT   + +    +  R +  SS  + L++++   
Sbjct: 32  TVGSYATDLNDYISFLGERGVPDSAAITRDDVVAYEYDLRRRGYADSSIERHLSALKGFH 91

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKSFWSEGSQPRLAFEFLL 200
           ++ V +     NP   V  PK         +  ++     Q       G + + A E L 
Sbjct: 92  RFLVGEGVTKGNPADLVSLPKVPDRLPDVLSVSEVNELLDQPFKDGPLGLRDQAALELLY 151

Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-------------ELPDGFMKLLAM 247
             GLR S+     +  +      ++    G+   +              L +G  KL   
Sbjct: 152 GCGLRASELISLDLGDVFFAEGILRVMGKGSRERIVPIGGSAQRVLLDYLENGRPKLAKP 211

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAG-VNKSAHGVRKFSATISADAGATAHE 306
           +        +N    +++        +      G  +   H +R   AT   + GA    
Sbjct: 212 SKTDG-AVILNARGGRLSRQALHTIVRTAGATIGRPDLHPHTLRHSFATHMLEGGADLRT 270

Query: 307 LMATYGWKTVDQAETYTKGADR 328
           +    G   +   + Y    DR
Sbjct: 271 IQEILGHSDISTTQIYVH-VDR 291


>gi|163791334|ref|ZP_02185747.1| site-specific recombinase, phage integrase family protein
           [Carnobacterium sp. AT7]
 gi|159873413|gb|EDP67504.1| site-specific recombinase, phage integrase family protein
           [Carnobacterium sp. AT7]
          Length = 299

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 41/287 (14%), Positives = 106/287 (36%), Gaps = 28/287 (9%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFE---SYFDQIIRKSGDFDYRKITTKHIR---SGV 123
           T K +  +Y  +      +  ++ ++E   ++F+  + ++GD ++  +T + +R     +
Sbjct: 5   TAKTIFLQYLITER--HYSELTKKAYEEDITHFESFLNQTGDTNFSNVTLQDVRIYLGEL 62

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
             +  + +S  + ++SMR  +++ ++ + V  NP   +   K+     + + +++M    
Sbjct: 63  NEQGLSRNSISRKISSMRAFYQFLLKNQLVEDNPFSYIHLKKKTLRLPKFFYEKEMDALF 122

Query: 184 SFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVE-- 236
                      +     E L  +G+R S+     ++ +  +    +   K      V   
Sbjct: 123 EAVKGEKPLDFRNEAILEILYGTGIRVSECSGIQLKDIDFDLSVLLIHGKGNKERYVPFG 182

Query: 237 ----------LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NK 284
                     +      L+A      +  F+N+    + +T           K+ +  + 
Sbjct: 183 HYAAVAMRDYMEKSRTPLMAKYKKSHDLLFVNHHGDPITSTGIEYVLNQVIKKSSLTSDI 242

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
             H +R   AT   + GA    +    G  ++   + Y     + RL
Sbjct: 243 HPHMLRHSFATHLLNNGADMRTVQELLGHASLSSTQIYAH-VTKERL 288


>gi|149194285|ref|ZP_01871382.1| Phage integrase [Caminibacter mediatlanticus TB-2]
 gi|149135460|gb|EDM23939.1| Phage integrase [Caminibacter mediatlanticus TB-2]
          Length = 275

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 42/249 (16%), Positives = 92/249 (36%), Gaps = 18/249 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLF 144
             ++ N+  +++    Q   K  + D   + +  +   + S+     S  + L+++   F
Sbjct: 16  KGVSKNTYEAYKRDLVQF-EKFIEKDIIDVDSNDVIRFL-SQIDNKRSLNRKLSAINSFF 73

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS-----QPRLAFEFL 199
            +A ++ YV       +++ K      +  +KE++    S     S     + +    FL
Sbjct: 74  DFAYKRNYVDE--KFKIKQAKLPKSLPKYLSKEEILTPISHIDSNSSWFELRDKALILFL 131

Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD----GFMKLLAMTPIGKETF 255
             +GLR S++    +  +++    ++  K      V + D       + LA  P   E  
Sbjct: 132 YATGLRISEALNIKLSDIEDGWVRVEMAKGEKQRLVPIADVALKAIEEYLAKRPCRSEYL 191

Query: 256 FINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKT 315
           F+N +  K++        K       +  S H +R   AT      A    +    G  +
Sbjct: 192 FVNKNCNKLSRISAFNITKKY-----LAVSPHVLRHSFATSLVLGNADLRVVQELLGHAS 246

Query: 316 VDQAETYTK 324
           ++  + YT 
Sbjct: 247 LNTTQIYTH 255


>gi|124516260|gb|EAY57768.1| putative phage integrase family protein [Leptospirillum rubarum]
 gi|206603101|gb|EDZ39581.1| Putative phage integrase family protein [Leptospirillum sp. Group
           II '5-way CG']
          Length = 321

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 45/293 (15%), Positives = 99/293 (33%), Gaps = 22/293 (7%)

Query: 53  GSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDF 109
           GS   R    +  + P      + ++ +       +  + +++    D   R     G  
Sbjct: 5   GSGEFRNPGKTEGRVPGN-DDAVRDFLEELAQSGHSPRTLMAYRRDLDAFRRFLLLRGKD 63

Query: 110 DYRKITTKHIRS-----GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP 164
                +     +      +E +++ P S ++ L+S+R  ++W  R+     NP   +  P
Sbjct: 64  SPSDPSIDRTLALSYLFDLEQQEYRPRSVLRILSSLRSFYQWLCRKGRCPSNPFEDLSGP 123

Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220
           +R        ++ +M          S    +  +  E    +G+R S+        L   
Sbjct: 124 RRPKTVPTVLSEREMATLLESRPGNSWEDRRDTVMLELFYLTGIRLSELAGLVRGDLSPG 183

Query: 221 IFSIKTQKTG-TIITVELPDGFMKLLA-----MTPIGKETFFINNDKQKMNATQFSIWFK 274
           +  I+ +  G     V L     +LL          G   F ++   + ++  Q     +
Sbjct: 184 MDRIQVRGKGNKERMVPLLGLTRELLRDFLSEEGGPGAPLFAVSPGGEALSVHQIGRIVR 243

Query: 275 AKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            +   +G+     + H  R   AT   D G    ++    G +++   + YT 
Sbjct: 244 RRVRLSGLGDRGVTPHTFRHSCATHLLDRGMDLRKIQELLGHQSLGTTQKYTH 296


>gi|167754200|ref|ZP_02426327.1| hypothetical protein ALIPUT_02493 [Alistipes putredinis DSM 17216]
 gi|167658825|gb|EDS02955.1| hypothetical protein ALIPUT_02493 [Alistipes putredinis DSM 17216]
          Length = 372

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 63/362 (17%), Positives = 110/362 (30%), Gaps = 54/362 (14%)

Query: 3   PSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHES-------------------TF 43
           P ++L P       R+G+       G+   IRL    E                     F
Sbjct: 8   PKIKLSP-----VVRNGREFVEVTFGNDNDIRLSLSKEENVLLVGGRAYLPAENFVLAEF 62

Query: 44  IPAY-------MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFE 96
              Y        SA+  + P++E    P             Y +       + ++   + 
Sbjct: 63  FDRYVKMAFIDYSAIKETAPRKEEDKRPPLPEG--------YLEKLQQVRYSDHTVRVYT 114

Query: 97  SYFDQIIRKSGDFDYRKITTKHIRSG----VESRKHTPSSAIQFLTSMRVLFKWAVRQEY 152
           SYF    +         +T   I       +  +  +     Q + +++  ++  + QE 
Sbjct: 115 SYFRDFQQYFEGRKIETVTPGEINDYLLYLIHEKNISSCQQNQRINAIKFYYEKVLGQER 174

Query: 153 VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRA 212
                C  V R KR+       +KE++++         +    F  L  +GLR S+    
Sbjct: 175 R----CYKVNRAKREKTLPDVLSKEEIKKILDVTVTDLRFFCMFSILYSAGLRISELLEL 230

Query: 213 GVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLL---AMTPIGKETFFINNDKQKMNAT 267
               +        ++  K        L    MK L         K   F +   +    +
Sbjct: 231 KPGDINEPRSLIRVRQGKGKKDRYTLLSKPLMKKLTEYNRLYKPKVWLFEHRPGEPFTES 290

Query: 268 QFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
             S   KA A +AG+ K    H +R   AT   + G     +    G   +   E Y   
Sbjct: 291 IVSKRLKAAAREAGITKRIYPHLLRHSFATHLLEQGIDIKIVKELMGHNNIKTTERYVHI 350

Query: 326 AD 327
           AD
Sbjct: 351 AD 352


>gi|86142374|ref|ZP_01060884.1| tyrosine type site-specific recombinase [Leeuwenhoekiella
           blandensis MED217]
 gi|85831126|gb|EAQ49583.1| tyrosine type site-specific recombinase [Leeuwenhoekiella
           blandensis MED217]
          Length = 405

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 42/273 (15%), Positives = 87/273 (31%), Gaps = 18/273 (6%)

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES-R 126
           P + K L+  Y        L+  +   + ++  Q +    +     +  +  R+ +E   
Sbjct: 106 PQSHKALLKRYVHYLKGQRLSEQTLKVYGNFTVQFLNHYKNKPIENLNVRAFRAFIEEVI 165

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
                S       +  L   ++  E+        ++RPK+  +     +++++       
Sbjct: 166 AFRRYSISSHRQCISALKHLSILLEFPKA-HFDGLQRPKKDKKLPVVLSRKEVIDLLRAT 224

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------TIITVEL 237
               + R     L  +GLR  +        +  +   +  +K               V L
Sbjct: 225 P-NLKHRTILALLYSAGLRIGELLALRCDAIDLDRMQVHIKKGKGRKDRTVKLAQAVVPL 283

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSAT 295
              +M+  A T           D Q  +A     + K   T+AG+ K  + H +R   AT
Sbjct: 284 LLNYMESYAPT----HYLIPGRDGQGYSAGAIRTFLKKSCTRAGIKKAVTPHTLRHSYAT 339

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADR 328
              D G     +    G    +    YT  + +
Sbjct: 340 HMMDHGVALRHIQELLGHAKPETTMIYTHVSQQ 372


>gi|296115374|ref|ZP_06834012.1| phage integrase family protein [Gluconacetobacter hansenii ATCC
           23769]
 gi|295978112|gb|EFG84852.1| phage integrase family protein [Gluconacetobacter hansenii ATCC
           23769]
          Length = 383

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 55/324 (16%), Positives = 106/324 (32%), Gaps = 19/324 (5%)

Query: 19  GKIIY--YFRKGHGRRIRLPYPHESTFIPAYMS-------ALTGSTPKREYINSPRKKPT 69
           G+ +Y  ++R G   R      H S +             A   S           +K  
Sbjct: 37  GRKVYVIHYRSGGRMRRYTIGQHGSPWTADLAREEAIKVLARVHSGENPADARLEDRKAM 96

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKH 128
           T++   + +        L   ++  ++   D  I+ K G +    I+   +       + 
Sbjct: 97  TVREFSNRFLDEYVDVHLKPTTQSEYKRAVDLFIVPKFGTWRMADISRADVSGFHGDLRQ 156

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAI--NPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            P  A + L  +  +F  A          NPC  V+R K +    R  T+E+  +  +  
Sbjct: 157 IPYQANRTLGVLSKMFSLADLWGIRTDGLNPCRGVQRYKEEKRE-RYLTQEEYARLGATL 215

Query: 187 SEG---SQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGF 241
           +E     +   A   L+ +G R  +       H+    +   +   KTG  I        
Sbjct: 216 NEAEDMPEAVWAIRLLILTGCRLREIQTLQWSHVFFDQSELRLPDSKTGAKIVQIGQAAI 275

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADA 300
             + A+T +    + I   K+    T     ++     AG++    H +R   A+ + + 
Sbjct: 276 NVIKAITRLEDNPYVITGRKKGGYLTDLQKPWRRIRKAAGLDDVRIHDLRHSFASDALEM 335

Query: 301 GATAHELMATYGWKTVDQAETYTK 324
           GA    +    G   +     Y  
Sbjct: 336 GADLTMIGHMLGHSDIKTTARYAH 359


>gi|47566156|ref|ZP_00237184.1| phage integrase family domain protein [Bacillus cereus G9241]
 gi|47556709|gb|EAL15040.1| phage integrase family domain protein [Bacillus cereus G9241]
          Length = 308

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 38/282 (13%), Positives = 92/282 (32%), Gaps = 30/282 (10%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFE---SYFDQIIRKSGDFDYRKITTKHIRSGV---E 124
           LK+ + ++     + ++   +  S+      F+    +    +   IT   ++  +   +
Sbjct: 6   LKFAVLDFLDDREFKNVTPKTLQSYRDILKQFEDFCLEHDVINVEDITASIMKRYILHYQ 65

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
            + +  ++    L  +R    + +  E +  NP   +++ +     I  +T   ++Q  +
Sbjct: 66  KKGNNATTTNSKLQRIRAFLNYMIECEVIKNNPAKKIQKAREDVR-IDVFTDYHIKQMLN 124

Query: 185 FWSE---------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIIT 234
           ++             +       LL +GLR S+ C      +     ++    K+    +
Sbjct: 125 YYRRIKQREKTFYAYRDYSIIVVLLGTGLRQSELCSLKWTDIDFKYQTLSVFGKSRKRES 184

Query: 235 VELPDGFMKLLAMTPIG----------KETFFINNDKQKMNATQFSIWFKAKATK---AG 281
           + + D  +  LA                E  F N   +++        FK  A       
Sbjct: 185 IPVADKVLMELATYKTFCEQTFVEKGLSEYVFTNRSNKQLTPNAVQNVFKRLAKIMNFKD 244

Query: 282 VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           V  S+H  R         +G +   +       ++   E Y 
Sbjct: 245 VRLSSHTFRHTFCQRCIQSGMSTFAVQRLMRHSSIVVTERYA 286


>gi|317508416|ref|ZP_07966086.1| phage integrase [Segniliparus rugosus ATCC BAA-974]
 gi|316253263|gb|EFV12663.1| phage integrase [Segniliparus rugosus ATCC BAA-974]
          Length = 308

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 44/291 (15%), Positives = 100/291 (34%), Gaps = 30/291 (10%)

Query: 70  TLKWLISEYRKSAHW-GSLAVNSRISF----ESYFDQIIRKSGDFD--YRKITTKHIRSG 122
           ++  + ++Y +   +    + N+  ++     +YF     ++         +T   +R  
Sbjct: 8   SISEVFAQYERHLRFERGRSPNTVRAYLGDLRAYFGPARDETAPARDVLGAVTIADLRGW 67

Query: 123 VESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
           +        + ++  +  + M+  F+WAVR    A +P + +  PK +        K+  
Sbjct: 68  LSEMTAEGASRATLARRASGMKTFFEWAVRGGLAAHDPTVRLTTPKLRKALPHVLRKDQA 127

Query: 180 QQFKSFWSEGS------QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTI 232
           +Q  +     S      + +L  E L  +G+R  + C   V  +      +    K    
Sbjct: 128 EQALTSAPAPSDGALLLRDQLVLELLYGTGMRVGELCGLDVDDVDQGRRLATVLGKGDKQ 187

Query: 233 ITVELPDGFMKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAK-ATKAG 281
             V         ++            P       +     +++          + A + G
Sbjct: 188 RVVPFGAKASDAISAWLRDGRPKLAGPRSGAALLLGARGGRLDQRTARRVVHERVAREPG 247

Query: 282 V-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330
           + +   HG+R  +AT   + GA    +    G  ++   + YT    +RIR
Sbjct: 248 LPDLGPHGLRHSAATHLLEGGADLRVVQEILGHSSLATTQIYTHVSVERIR 298


>gi|312170746|emb|CBX79008.1| Tyrosine recombinase xerC [Erwinia amylovora ATCC BAA-2158]
          Length = 302

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 37/259 (14%), Positives = 84/259 (32%), Gaps = 19/259 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRKHTPSSAIQFLT 138
             L+  +++++      II    +    +         + + +        P+S    L+
Sbjct: 22  RQLSPLTQVNYRRQLSAIIVLLDELKVVEWARLDAALVRSLAARSTRSGLKPASLALRLS 81

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLA 195
           ++R    W V Q  +  NP   V  P+      +    +++ +            + R  
Sbjct: 82  ALRSFLDWLVSQGAIKANPAKGVATPRAARHLPKNIDVDEVNRLLEIDLNDPLAVRDRAM 141

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT--------IITVELPDGFMKLLAM 247
            E +  +GLR S+     + HL      +     G+           V   + ++ +  +
Sbjct: 142 LEAMYGAGLRLSELVGIDLGHLDLASGEVWVIGKGSKERRLPMGRTAVHWVENWLAMREL 201

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAH 305
                   F++N  ++++       F     K GV  +   H +R   AT   ++     
Sbjct: 202 FEPQDNALFLSNQGKRISTRNVQKRFAEWGVKQGVSSHIHPHKLRHSFATHMLESSGDLR 261

Query: 306 ELMATYGWKTVDQAETYTK 324
            +    G   +   + YT 
Sbjct: 262 AVQELLGHANLTTTQIYTH 280


>gi|317129216|ref|YP_004095498.1| tyrosine recombinase XerC [Bacillus cellulosilyticus DSM 2522]
 gi|315474164|gb|ADU30767.1| tyrosine recombinase XerC [Bacillus cellulosilyticus DSM 2522]
          Length = 297

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 42/237 (17%), Positives = 86/237 (36%), Gaps = 23/237 (9%)

Query: 115 TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
             +   + +  + ++ +S  + ++++R  + + +R+E V  NP  SV  PK        +
Sbjct: 53  DIRDYLTVLHQKAYSRNSIARKISALRSFYSFLMREEIVKENPFQSVTTPKGGKRLPTFF 112

Query: 175 TKEDMQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKT 229
            +E++ +           G +     E L  +G+R S+     +    N+I +     K 
Sbjct: 113 FEEELAKLFDSTDTSKPLGKRNNAILELLYATGIRVSECVSLNLMDYDNDIGTLFVRGKG 172

Query: 230 GTIITVE--------LPDGF---MKLLAMTPIGKETFFINNDKQKMNATQ----FSIWFK 274
                V         L D        L      K+  F+N    +++        +   +
Sbjct: 173 KKERYVPVGSFAMEALNDYLNNGRPHLRSNQTNKDALFVNYRGGRLSDRSIRTILNNIVR 232

Query: 275 AKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330
             +T + +  S H +R   AT   + GA    +    G   +   + YT    DR+R
Sbjct: 233 DASTASRI--SPHVLRHTFATHMLNEGADLRTVQELLGHSRLSSTQVYTHVTKDRLR 287


>gi|34810656|pdb|1P7D|A Chain A, Crystal Structure Of The Lambda Integrase (Residues
           75-356) Bound To Dna
 gi|34810657|pdb|1P7D|B Chain B, Crystal Structure Of The Lambda Integrase (Residues
           75-356) Bound To Dna
          Length = 283

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 49/277 (17%), Positives = 96/277 (34%), Gaps = 19/277 (6%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH- 128
           TL   +  Y K      +   + I++ S    I R   D     ITTK I + +      
Sbjct: 2   TLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAMLNGYIDE 61

Query: 129 -TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              +SA    +++   F+ A+ + ++  N   +    K +    R    E ++ +++  S
Sbjct: 62  GKAASAKLIRSTLSDAFREAIAEGHITTNHVAATRAAKSEVRRSRLTADEYLKIYQAAES 121

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE---------LP 238
                RLA E  + +G R  D C      + +    ++  KTG  I +          + 
Sbjct: 122 SPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTALHIDALGIS 181

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NKSAHGVRKFS 293
                      +G ET   +  ++ +++   S +F      +G+       + H +R   
Sbjct: 182 MKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPPTFHELR-SL 240

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
           +    +   +        G K+   A       DR R
Sbjct: 241 SARLYEKQISDKFAQHLLGHKSDTMASQ--XRDDRGR 275


>gi|257791851|ref|YP_003182457.1| tyrosine recombinase XerD [Eggerthella lenta DSM 2243]
 gi|257475748|gb|ACV56068.1| tyrosine recombinase XerD [Eggerthella lenta DSM 2243]
          Length = 297

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 38/277 (13%), Positives = 78/277 (28%), Gaps = 28/277 (10%)

Query: 76  SEYRKSAHWGSL----AVNSRISFESYFDQIIRKSGDFDYRKITTKH------IRSGVES 125
             YR+   +  +    +  +  ++ +      +         +            S +  
Sbjct: 3   ELYREYLAYLRVERGSSPLTVSAYAADLKDYAQFLEKRGVESLDDVDREVIVAYESDLFG 62

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           R +  S+  + ++ ++   ++ VR+ Y   NP  +++ PK         +   +    S 
Sbjct: 63  RGYAASTVDRHVSVLKGFHRFLVREGYARRNPADTIQLPKAPDRLPDVLSVAQVDAMLSR 122

Query: 186 W----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE----- 236
                    + R   E L   GLR S+     +         +     G    +      
Sbjct: 123 PLDEGPLALRNRAILEVLYGCGLRVSECTGLDLGDAILEEGYLHILGKGNKERIAPISGA 182

Query: 237 --------LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAH 287
                   L  G  +L+          F+N    ++                GV N   H
Sbjct: 183 ALRALRDYLERGRPELVRSYAKSTSAVFLNARGGRLTRQSVHSLVAEAGRFIGVANLHPH 242

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            +R   AT     GA    +    G   +   + YT 
Sbjct: 243 TLRHSFATHMLAGGADLRVIQEILGHSDISTTQIYTH 279


>gi|218530686|ref|YP_002421502.1| tyrosine recombinase XerD [Methylobacterium chloromethanicum CM4]
 gi|218522989|gb|ACK83574.1| tyrosine recombinase XerD [Methylobacterium chloromethanicum CM4]
          Length = 328

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 45/273 (16%), Positives = 85/273 (31%), Gaps = 28/273 (10%)

Query: 85  GSLAVNSRISFESYFDQIIRK-----SGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
              A N+  ++    D  +           + +    +   + +E R    SSA + L+ 
Sbjct: 27  RGAAANTLAAYRRDLDDYLGYLAQGGIDPEEAQAEQVRAYIASLEPRGLKASSAARRLSC 86

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP------- 192
           +R   ++   + Y   +P   V  P+R     +  +  ++ +  +   E  +        
Sbjct: 87  IRGFHRFLYAEGYSETDPTAPVAAPRRAKGLPKVLSVAEVDRLLATARERVEAAGDDRAE 146

Query: 193 -------RLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKL 244
                      E L  +GLR S+              + +   K G    V L D   + 
Sbjct: 147 ARAAARMLCLLELLYATGLRVSELVALPRSAAATRERYLVVKGKGGRERLVPLTDLAREA 206

Query: 245 LAM-----TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATI 296
           +       T  G   F   ++   +    F+   K  A  AG+     S H +R   A+ 
Sbjct: 207 MRTHVAHLTAEGAWLFPAESESGHLTRQAFARDLKTAAAAAGLRTDRVSPHVLRHAFASH 266

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRI 329
               GA    +    G   +   + YT   D  
Sbjct: 267 LLQNGADLRIVQELLGHADISTTQIYTHVLDER 299


>gi|325129523|gb|EGC52350.1| tyrosine recombinase XerC [Neisseria meningitidis OX99.30304]
 gi|325135646|gb|EGC58263.1| tyrosine recombinase XerC [Neisseria meningitidis M0579]
          Length = 305

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 36/278 (12%), Positives = 84/278 (30%), Gaps = 24/278 (8%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD-------YRKITTKHIRSGV 123
                  Y ++      + ++  ++    +++                + ++ +   + +
Sbjct: 6   FAAHFDAYLENIVREGKSEHTVAAYRRDLEELFALLAQMPSEDAGGVPQDLSRRDFTAAL 65

Query: 124 ES---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                R     +  + L+S R    W V +  +  +P   ++ PK+     +   +E + 
Sbjct: 66  RRLSQRGLNARTLARKLSSWRQYCVWLVERGLLHTDPTADIKPPKQPERVPKALPQEWLN 125

Query: 181 QFKSF-----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIIT 234
           +              +    FE +  SGLR S+        +  +   +     G     
Sbjct: 126 RMLDLPVDGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGKGRKQRQ 185

Query: 235 VELP----DGFMKL--LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK--AGVNKSA 286
           V L     +       L  T    +  F   +  +++  Q        A +   G + S 
Sbjct: 186 VSLTGKSVEALKNYLPLRQTASDGKALFTGRNGTRLSQRQIQKRLAQWAAQNGDGRHVSP 245

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           H +R   A     A      +    G  ++   + YTK
Sbjct: 246 HMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTK 283


>gi|14591576|ref|NP_143658.1| integrase/recombinase [Pyrococcus horikoshii OT3]
 gi|73920474|sp|O59490|XERCL_PYRHO RecName: Full=Probable tyrosine recombinase xerC-like
 gi|3258262|dbj|BAA30945.1| 285aa long hypothetical integrase/recombinase [Pyrococcus
           horikoshii OT3]
          Length = 285

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 41/284 (14%), Positives = 101/284 (35%), Gaps = 20/284 (7%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
             ++ E+         + N+   +  Y  +   +   +           + +    ++  
Sbjct: 10  SDILEEFATYLELEGKSKNTIRMYTYYLSKFFEEG--YSPTARDALKFLAKLRKSGYSIR 67

Query: 132 SAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           S    + +++  FK+  +  E         ++ PK      +  T++++++  S      
Sbjct: 68  SLNLVIQALKSYFKFEGLDSE------AEKLKNPKIPKSLPKSLTEDEVKKIVSVAD-NL 120

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNN--IFSIKTQKTGTIITVELPDGFM----KL 244
           + +L    L  +GLR S+ C   ++ +        ++  K G    + +    +    + 
Sbjct: 121 RDKLILLLLYGAGLRVSELCNLKIEDVNFEKSFLIVRGGKGGKDRVIPISKTLLFEIERY 180

Query: 245 LAMTPIGKETFFI---NNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAG 301
           L          F+    N K K++     +  K    K G+N + H +R   AT   + G
Sbjct: 181 LKTRKDNSPYLFVEKRRNRKDKLSPKTVWMLVKKYGKKVGLNVTPHQLRHSFATHMLERG 240

Query: 302 ATAHELMATYGWKTVDQAETYTKGADR-IRLGIKNSRRISSVVD 344
                +    G   +   + YTK   + +R  I+ ++ I +++ 
Sbjct: 241 VDIRIIQELLGHANLSTTQIYTKVTTKHLREAIEKAKLIETILG 284


>gi|187931223|ref|YP_001891207.1| site-specific recombinase [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|187712132|gb|ACD30429.1| site-specific recombinase [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 292

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 38/264 (14%), Positives = 93/264 (35%), Gaps = 18/264 (6%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI---RSGVESRKHTPSSAIQFLTSMR 141
            + +  +  +++    Q+ +   D +   +T   I      + ++ ++P +  + L+S+R
Sbjct: 18  KNYSQETINNYQRDLLQLNQALSDKNIISLTHSDILIWIKKLHAQGNSPKTLQRKLSSVR 77

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG---SQPRLAFEF 198
             F + +  E V+ NP   ++ PK      +    +++             ++    F+ 
Sbjct: 78  SFFNFLINSEIVSQNPANGIKAPKDSKRLPKVVNTDELAYLLDINPSNDIEARDIACFDL 137

Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLLAMTP 249
           L   G+R S+     ++ +  +  +I+    G    +          L     K+     
Sbjct: 138 LYSCGIRLSELSSVELKDISISQKNIRVTGKGNKQRIVYFGTKTLSNLSRWL-KIRDSLK 196

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATK-AGVNKSAHGVRKFSATISADAGATAHELM 308
              +  FI+ D + +         +  A K A  +   H +R   A+   D+      + 
Sbjct: 197 PSSDYLFISRDGKHLTNRSIQKRLEIFAQKYASRHIHPHMLRHSFASHVLDSSKDLLAVK 256

Query: 309 ATYGWKTVDQAETYTKGADRIRLG 332
              G   +   + YT   +  +L 
Sbjct: 257 DLLGHADISSTQIYTH-LNFQQLA 279


>gi|148559335|ref|YP_001259359.1| phage integrase family site specific recombinase [Brucella ovis
           ATCC 25840]
 gi|148370592|gb|ABQ60571.1| site-specific recombinase, phage integrase family [Brucella ovis
           ATCC 25840]
          Length = 125

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 54/124 (43%), Gaps = 2/124 (1%)

Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
           ++  KTG  + + +     ++L  TP   ET  +    +  +    +         A + 
Sbjct: 1   MRQGKTGKRLFLPITPILSEVLEATPRQGETVLVTAYGEPFSPKSLTGRMADWTASAKLP 60

Query: 284 K--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
           K  + HG+RK    I A+ GA+  ++M T G   +  AE YT+ A++ RL      R+  
Sbjct: 61  KGFTLHGLRKTLGKILAEGGASTRQIMDTLGHDDIAHAELYTREAEQARLATDGMSRVVR 120

Query: 342 VVDS 345
           +  +
Sbjct: 121 LKRN 124


>gi|189183847|ref|YP_001937632.1| putative integrase [Orientia tsutsugamushi str. Ikeda]
 gi|189180618|dbj|BAG40398.1| putative integrase [Orientia tsutsugamushi str. Ikeda]
          Length = 348

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 52/270 (19%), Positives = 96/270 (35%), Gaps = 16/270 (5%)

Query: 65  RKKPTTLKWL----ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
           +    T K L    I EY K          +R  +       ++K  +     I      
Sbjct: 53  KANDITFKELCYKYIEEYAKIYIIHWQKDAAR-IYNYGKQLFLKKINEVKRNDIQQIF-- 109

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
               S+K   ++A   L ++R +F  A +   +  NP L +E+ K +    R  + + M 
Sbjct: 110 -NDISKKGKYATANLILLTLRTIFNKAKKWGLIENNPTLGIEQHKLQARERR-LSYDKMG 167

Query: 181 QFKSFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVE 236
           +        + P  R      LY+G R S+       ++     I+ I   K G    + 
Sbjct: 168 RLLHVLCGETTPLIRDFALLALYTGARKSNVLEMEWDNIDFERKIWHIPKTKNGKAQNIP 227

Query: 237 LPDGFMKLLAMTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFS 293
           L D  M++L       E+     +      +  + +  +     KAG+ N   H +R+  
Sbjct: 228 LTDEAMEILQARKFTSESKWVLPSTTSASGHLERPNNSWHRVCKKAGIKNLRIHDLRRTF 287

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYT 323
           A+   D GA+   +       + +   +YT
Sbjct: 288 ASCMGDVGASQRTISIALNHISPESTISYT 317


>gi|297537394|ref|YP_003673163.1| tyrosine recombinase XerC [Methylotenera sp. 301]
 gi|297256741|gb|ADI28586.1| tyrosine recombinase XerC [Methylotenera sp. 301]
          Length = 294

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 32/270 (11%), Positives = 84/270 (31%), Gaps = 20/270 (7%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFES---YFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
           + +Y +   +   L+  +  ++       + +   +          +   + +  R  + 
Sbjct: 4   LDDYLQHLTFERGLSALTLKNYARDIQLLESLADNTALDTVTNTQIRRYIATLHGRGLSG 63

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
            +  + L++ R  + +    +    NP + +  PK      +  + +   +F     +G 
Sbjct: 64  KTIARALSAWRGFYNYLTHHKGYTQNPVMGLRAPKSAKTLPQALSTDQAVKFVDIKGDGP 123

Query: 191 ---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELP 238
              +     E    SGLR ++     +  L  +  ++     G    +          + 
Sbjct: 124 LERRDHAILELFYSSGLRLAELVNLDIGMLDFSEGTVTVTGKGNKTRIVPMGSHAVSAIQ 183

Query: 239 DGFM--KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSA 294
                  L+ +  I     F+    +++         K  + K G+N S   H +R   A
Sbjct: 184 TWLQSRALIKIADINPNALFVTQQGKRITPRAVQYRVKEWSIKQGLNISMHPHLLRHSFA 243

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324
           +    +      +    G   +   + YT 
Sbjct: 244 SHVLQSSQDLRAVQEMLGHANISTTQIYTH 273


>gi|51459866|gb|AAU03829.1| integrase/recombinase [Rickettsia typhi str. Wilmington]
          Length = 297

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 48/276 (17%), Positives = 97/276 (35%), Gaps = 38/276 (13%)

Query: 85  GSLAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
            +L+ NS +S++            +K  + +      +     + S      S  + +++
Sbjct: 6   RALSKNSILSYKRDLLDFHNYLTKQKISELNITTRNIRKWIEYLASNNLHARSINRKIST 65

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-----SEGSQPRL 194
           ++  + + + + + A NP L+V+ PK + +     + + ++    +       EG +   
Sbjct: 66  IKSYYTFLISENHTAFNPVLNVDLPKYQNKLPVILSIDQIKLILEYCSKDHTPEGIRLNA 125

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNN---------IFSIKTQKTGTIITVELPDGFMKLL 245
               L  SGLR S+     +  +  N         IFS+  +     + V      + + 
Sbjct: 126 MIHLLYASGLRVSELVSLKLADILTNNTSKGIVRKIFSVLGKGNKERVIVINDQAVLSIT 185

Query: 246 AMTPIGKETFFINNDKQK--------------MNATQFSIWFKAKATKAGVN---KSAHG 288
               I     F+N  K K              M    F+I  K+ A   G+N    S H 
Sbjct: 186 KYLKIRD--IFVNKAKSKNLIYLFPSSAVAGYMTRQNFAILLKSVALDIGLNPKNVSPHI 243

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +R   A+   + GA    +    G   +   + YT 
Sbjct: 244 LRHSFASHLLEGGADLRVIQELLGHADISTTQIYTH 279


>gi|296269467|ref|YP_003652099.1| tyrosine recombinase XerD [Thermobispora bispora DSM 43833]
 gi|296092254|gb|ADG88206.1| tyrosine recombinase XerD [Thermobispora bispora DSM 43833]
          Length = 313

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 49/275 (17%), Positives = 97/275 (35%), Gaps = 34/275 (12%)

Query: 89  VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----KHTPS----SAIQFLTSM 140
            + R     Y D +  + G     ++    + + + +        P+    SA +  +++
Sbjct: 28  ASYRRDLRRYLDHLKAR-GLRTLAEVREDDVAAFLTALREGDADHPALVASSAARAFSAV 86

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-----SEGSQPRLA 195
           R L ++A+R+     +P  ++  P++     +  + E++++  +           + R  
Sbjct: 87  RGLHRFALREGLTRHDPAHAIRPPRQLRRLPKAISVEEVERLIAACGPDGSPLTLRNRAL 146

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNI-------FSIKTQKTGTIITVELPDGFMKLL--- 245
            E L  +G R S++    V  +                 K G    V L     + L   
Sbjct: 147 LELLYGTGARISEAVGLAVDDVTTGAPTDPARDQVRLRGKGGRTRIVPLGRYARQALDAY 206

Query: 246 --------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATI 296
                   A    G    F+N    ++         +A A +AG++  S H +R   AT 
Sbjct: 207 LVRARPQLAAQGRGTSALFLNARGGRLTRQGAWEVLQAAAERAGLSGVSPHMLRHSFATH 266

Query: 297 SADAGATAHELMATYGWKTVDQAETYT-KGADRIR 330
             D GA    +    G  +V   + YT    DR+R
Sbjct: 267 LLDGGADVRVVQELLGHASVATTQVYTLVTVDRLR 301


>gi|206975126|ref|ZP_03236040.1| DNA integration/recombination/invertion protein [Bacillus cereus
           H3081.97]
 gi|217959606|ref|YP_002338158.1| DNA integration/recombination/invertion protein [Bacillus cereus
           AH187]
 gi|229138832|ref|ZP_04267413.1| DNA integration/recombination/invertion protein [Bacillus cereus
           BDRD-ST26]
 gi|206746547|gb|EDZ57940.1| DNA integration/recombination/invertion protein [Bacillus cereus
           H3081.97]
 gi|217066212|gb|ACJ80462.1| DNA integration/recombination/invertion protein [Bacillus cereus
           AH187]
 gi|228644748|gb|EEL00999.1| DNA integration/recombination/invertion protein [Bacillus cereus
           BDRD-ST26]
          Length = 369

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 53/312 (16%), Positives = 105/312 (33%), Gaps = 38/312 (12%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE 124
               TLK  + ++ +      +  ++  S+ S     II   G     K+   HI+   +
Sbjct: 60  PSKITLKDYLVQWLEIKK-MCVEKSTFSSYSSNITYHIIPSIGMIALHKLNVIHIQKCYK 118

Query: 125 SRKHTPSSAIQFLTSMRVL---FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
           S      S    L   R+L      AV+Q  ++ NP   VE PK++   I+ WT+E++++
Sbjct: 119 SALDNGVSNNSILLLHRILKTALNLAVKQNIISRNPADFVEIPKKEKTSIQTWTEEEVKR 178

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--------------NNIFSIKTQ 227
           F    S+ S+  +A+   + +G+R  +      Q +               ++      +
Sbjct: 179 FL-LHSQESRYHIAYLIAITTGMRLGEVLGLRWQDVDFRNHTVTINQTVGGDDKVKNTAK 237

Query: 228 KTGTIITVELPDGFMKLLAMTPI--------------GKETFFINNDKQKMNATQFSIWF 273
              +  T+ +P   ++ +    I                +    N     +    F   F
Sbjct: 238 TNASKRTIPVPVETIEAIKKHRIQINKEKLRMGSAYQDLDLINCNESGGVLKRDAFRRKF 297

Query: 274 KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADRIRL 331
             +   A V K   H +R   ATI    G     +    G   +      Y+       +
Sbjct: 298 YKEINNAKVKKIKIHDLRHTHATILLKQGVNPKIISERLGHTDISLTLRVYSHVL--PNM 355

Query: 332 GIKNSRRISSVV 343
             +  +     +
Sbjct: 356 QEEAVKNFGKSI 367


>gi|15608839|ref|NP_216217.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           H37Rv]
 gi|15841158|ref|NP_336195.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           CDC1551]
 gi|31792887|ref|NP_855380.1| site-specific tyrosine recombinase XerD [Mycobacterium bovis
           AF2122/97]
 gi|121637608|ref|YP_977831.1| site-specific tyrosine recombinase XerD [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|148661498|ref|YP_001283021.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           H37Ra]
 gi|148822907|ref|YP_001287661.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           F11]
 gi|167969182|ref|ZP_02551459.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           H37Ra]
 gi|215403996|ref|ZP_03416177.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           02_1987]
 gi|215411348|ref|ZP_03420156.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           94_M4241A]
 gi|215427023|ref|ZP_03424942.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           T92]
 gi|215430593|ref|ZP_03428512.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           EAS054]
 gi|215445888|ref|ZP_03432640.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           T85]
 gi|218753409|ref|ZP_03532205.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           GM 1503]
 gi|219557623|ref|ZP_03536699.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           T17]
 gi|224990083|ref|YP_002644770.1| site-specific tyrosine recombinase [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|253799261|ref|YP_003032262.1| integrase [Mycobacterium tuberculosis KZN 1435]
 gi|254231896|ref|ZP_04925223.1| hypothetical protein TBCG_01654 [Mycobacterium tuberculosis C]
 gi|254364540|ref|ZP_04980586.1| hypothetical integrase/recombinase [Mycobacterium tuberculosis str.
           Haarlem]
 gi|254550710|ref|ZP_05141157.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           '98-R604 INH-RIF-EM']
 gi|260200764|ref|ZP_05768255.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           T46]
 gi|260204970|ref|ZP_05772461.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           K85]
 gi|289443158|ref|ZP_06432902.1| tyrosine recombinase XerD [Mycobacterium tuberculosis T46]
 gi|289554527|ref|ZP_06443737.1| integrase [Mycobacterium tuberculosis KZN 605]
 gi|289569749|ref|ZP_06449976.1| integrase [Mycobacterium tuberculosis T17]
 gi|289574368|ref|ZP_06454595.1| integrase [Mycobacterium tuberculosis K85]
 gi|289745862|ref|ZP_06505240.1| tyrosine recombinase xerD [Mycobacterium tuberculosis 02_1987]
 gi|289750256|ref|ZP_06509634.1| integrase [Mycobacterium tuberculosis T92]
 gi|289753791|ref|ZP_06513169.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           EAS054]
 gi|289757810|ref|ZP_06517188.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           T85]
 gi|289761856|ref|ZP_06521234.1| tyrosine recombinase xerD [Mycobacterium tuberculosis GM 1503]
 gi|294993190|ref|ZP_06798881.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           210]
 gi|297634253|ref|ZP_06952033.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           KZN 4207]
 gi|297731240|ref|ZP_06960358.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           KZN R506]
 gi|298525199|ref|ZP_07012608.1| integrase/recombinase XerD [Mycobacterium tuberculosis 94_M4241A]
 gi|306775886|ref|ZP_07414223.1| integrase [Mycobacterium tuberculosis SUMu001]
 gi|306779704|ref|ZP_07418041.1| integrase [Mycobacterium tuberculosis SUMu002]
 gi|306784437|ref|ZP_07422759.1| integrase [Mycobacterium tuberculosis SUMu003]
 gi|306788804|ref|ZP_07427126.1| integrase [Mycobacterium tuberculosis SUMu004]
 gi|306793139|ref|ZP_07431441.1| integrase [Mycobacterium tuberculosis SUMu005]
 gi|306797519|ref|ZP_07435821.1| integrase [Mycobacterium tuberculosis SUMu006]
 gi|306803400|ref|ZP_07440068.1| integrase [Mycobacterium tuberculosis SUMu008]
 gi|306807982|ref|ZP_07444650.1| integrase [Mycobacterium tuberculosis SUMu007]
 gi|306967799|ref|ZP_07480460.1| integrase [Mycobacterium tuberculosis SUMu009]
 gi|306971995|ref|ZP_07484656.1| integrase [Mycobacterium tuberculosis SUMu010]
 gi|307079707|ref|ZP_07488877.1| integrase [Mycobacterium tuberculosis SUMu011]
 gi|307084286|ref|ZP_07493399.1| integrase [Mycobacterium tuberculosis SUMu012]
 gi|313658572|ref|ZP_07815452.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           KZN V2475]
 gi|54039885|sp|P67637|XERD_MYCBO RecName: Full=Tyrosine recombinase xerD
 gi|54042782|sp|P67636|XERD_MYCTU RecName: Full=Tyrosine recombinase xerD
 gi|2326744|emb|CAB10958.1| PROBABLE INTEGRASE/RECOMBINASE [Mycobacterium tuberculosis H37Rv]
 gi|13881378|gb|AAK46009.1| integrase/recombinase XerD [Mycobacterium tuberculosis CDC1551]
 gi|31618477|emb|CAD96395.1| PROBABLE INTEGRASE/RECOMBINASE [Mycobacterium bovis AF2122/97]
 gi|121493255|emb|CAL71726.1| Probable integrase/recombinase [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|124600955|gb|EAY59965.1| hypothetical protein TBCG_01654 [Mycobacterium tuberculosis C]
 gi|134150054|gb|EBA42099.1| hypothetical integrase/recombinase [Mycobacterium tuberculosis str.
           Haarlem]
 gi|148505650|gb|ABQ73459.1| tyrosine recombinase [Mycobacterium tuberculosis H37Ra]
 gi|148721434|gb|ABR06059.1| hypothetical integrase/recombinase [Mycobacterium tuberculosis F11]
 gi|224773196|dbj|BAH26002.1| site-specific tyrosine recombinase [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|253320764|gb|ACT25367.1| integrase [Mycobacterium tuberculosis KZN 1435]
 gi|289416077|gb|EFD13317.1| tyrosine recombinase XerD [Mycobacterium tuberculosis T46]
 gi|289439159|gb|EFD21652.1| integrase [Mycobacterium tuberculosis KZN 605]
 gi|289538799|gb|EFD43377.1| integrase [Mycobacterium tuberculosis K85]
 gi|289543503|gb|EFD47151.1| integrase [Mycobacterium tuberculosis T17]
 gi|289686390|gb|EFD53878.1| tyrosine recombinase xerD [Mycobacterium tuberculosis 02_1987]
 gi|289690843|gb|EFD58272.1| integrase [Mycobacterium tuberculosis T92]
 gi|289694378|gb|EFD61807.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           EAS054]
 gi|289709362|gb|EFD73378.1| tyrosine recombinase xerD [Mycobacterium tuberculosis GM 1503]
 gi|289713374|gb|EFD77386.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           T85]
 gi|298494993|gb|EFI30287.1| integrase/recombinase XerD [Mycobacterium tuberculosis 94_M4241A]
 gi|308215637|gb|EFO75036.1| integrase [Mycobacterium tuberculosis SUMu001]
 gi|308327355|gb|EFP16206.1| integrase [Mycobacterium tuberculosis SUMu002]
 gi|308330798|gb|EFP19649.1| integrase [Mycobacterium tuberculosis SUMu003]
 gi|308334621|gb|EFP23472.1| integrase [Mycobacterium tuberculosis SUMu004]
 gi|308338408|gb|EFP27259.1| integrase [Mycobacterium tuberculosis SUMu005]
 gi|308342131|gb|EFP30982.1| integrase [Mycobacterium tuberculosis SUMu006]
 gi|308345601|gb|EFP34452.1| integrase [Mycobacterium tuberculosis SUMu007]
 gi|308349918|gb|EFP38769.1| integrase [Mycobacterium tuberculosis SUMu008]
 gi|308354539|gb|EFP43390.1| integrase [Mycobacterium tuberculosis SUMu009]
 gi|308358516|gb|EFP47367.1| integrase [Mycobacterium tuberculosis SUMu010]
 gi|308362455|gb|EFP51306.1| integrase [Mycobacterium tuberculosis SUMu011]
 gi|308366075|gb|EFP54926.1| integrase [Mycobacterium tuberculosis SUMu012]
 gi|323719791|gb|EGB28905.1| integrase [Mycobacterium tuberculosis CDC1551A]
 gi|326903315|gb|EGE50248.1| integrase [Mycobacterium tuberculosis W-148]
 gi|328459013|gb|AEB04436.1| integrase [Mycobacterium tuberculosis KZN 4207]
          Length = 311

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 43/274 (15%), Positives = 86/274 (31%), Gaps = 35/274 (12%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH----IRSGVESRKHTPSS-------- 132
             +A N+  S+     +  +   +     +            V  R+  P S        
Sbjct: 19  RGVAANTLSSYRRDLRRYSKHLEERGITDLAKVGEHDVSEFLVALRRGDPDSGTAALSAV 78

Query: 133 -AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----- 186
            A + L ++R L ++A  +    ++   +V  P       +  T +++            
Sbjct: 79  SAARALIAVRGLHRFAAAEGLAELDVARAVRPPTPSRRLPKSLTIDEVLSLLEGAGGDKP 138

Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFM 242
                  + R   E L  +G R S++    +  +  +    +   K G    V +    +
Sbjct: 139 SDGPLTLRNRAVLELLYSTGARISEAVGLDLDDIDTHARSVLLRGKGGKQRLVPVGRPAV 198

Query: 243 KLL-----------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289
             L           A    G    F+N    +++        +  A +AG+    S H +
Sbjct: 199 HALDAYLVRGRPDLARRGRGTAAIFLNARGGRLSRQSAWQVLQDAAERAGITAGVSPHML 258

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           R   AT   + GA    +    G  +V   + YT
Sbjct: 259 RHSFATHLLEGGADVRVVQELLGHASVTTTQIYT 292


>gi|320539384|ref|ZP_08039053.1| site-specific tyrosine recombinase [Serratia symbiotica str.
           Tucson]
 gi|320030509|gb|EFW12519.1| site-specific tyrosine recombinase [Serratia symbiotica str.
           Tucson]
          Length = 303

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 41/259 (15%), Positives = 88/259 (33%), Gaps = 19/259 (7%)

Query: 85  GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIR--SGVESRKHTPSSAIQF-LT 138
             L+  +++S+      +    +  G  ++  +    +R  +    R    S+++   L+
Sbjct: 23  RQLSPLTQLSYAHQLQALMLLAQSIGVSEWTSLDAAAVRMLAVRSKRAGLQSASLALRLS 82

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLA 195
           S+R    W V Q  +  NP   +  P+      +    ++M Q            + R  
Sbjct: 83  SLRSFLDWLVSQGVLNANPAKGIRTPRSGRHLPKNIDVDEMNQLLDIDLNDPLAVRDRAM 142

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT--------IITVELPDGFMKLLAM 247
            E +  +GLR S+      +H+      I     G+           V     ++ +  +
Sbjct: 143 LETMYGAGLRLSELVGLDCRHIDLAAGEIWVMGKGSKERKLPLGRTAVTWLQHWLAIREL 202

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAH 305
                +  F++N  ++++       F     K GVN     H +R   AT   ++     
Sbjct: 203 FEPEDDAIFLSNQGRRISPRNVQKRFAEWGVKQGVNSHIHPHKLRHSFATHMLESSGDLR 262

Query: 306 ELMATYGWKTVDQAETYTK 324
            +    G   +   + YT 
Sbjct: 263 AVQELLGHANLTTTQIYTH 281


>gi|330685662|gb|EGG97303.1| tyrosine recombinase XerC [Staphylococcus epidermidis VCU121]
          Length = 297

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 39/265 (14%), Positives = 102/265 (38%), Gaps = 20/265 (7%)

Query: 85  GSLAVNSRISFESYF----DQIIRKSGDF-DYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
            + + ++  S+        D + ++S D  D+     ++  S + S+    ++  + +++
Sbjct: 16  RNFSDHTLKSYRDDIVQFNDFLYQESLDLNDFEYKDARNYLSFLYSKNLKRTTVSRKIST 75

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KSFWSEGSQPRLA 195
           +R  +++ + Q+   +NP + +  PK++    + + +E+M+      ++   +G + ++ 
Sbjct: 76  LRTFYEYWMTQDESVVNPFVQLVHPKKEQYLPQFFYEEEMEALFKTVETDSKKGMRDKVI 135

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE--------LPDGFMKLLA 246
            E L  +G+R S+      Q L   +  +K   K      +         +     +   
Sbjct: 136 LELLYATGIRVSELVHIKTQDLDMKLPGVKVLGKGNKERFIPFGEFCKQSIERYLKEFKP 195

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKA-GV-NKSAHGVRKFSATISADAGATA 304
           +  +  +   +N   Q +              +  GV N   H +R   AT   + GA  
Sbjct: 196 LKHVDHDYLIVNMQGQPITERGVRYVLNDVVKRTSGVTNIHPHKLRHTFATHLLNQGADL 255

Query: 305 HELMATYGWKTVDQAETYTKGADRI 329
             + +  G   +     YT  +++ 
Sbjct: 256 RTVQSLLGHVNLSTTGKYTHVSNQQ 280


>gi|329963595|ref|ZP_08301073.1| integron integrase [Bacteroides fluxus YIT 12057]
 gi|328528500|gb|EGF55473.1| integron integrase [Bacteroides fluxus YIT 12057]
          Length = 372

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 63/362 (17%), Positives = 111/362 (30%), Gaps = 54/362 (14%)

Query: 3   PSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHES-------------------TF 43
           P ++L P       R+G+       G+   IRL    E                     F
Sbjct: 8   PKIKLSP-----VVRNGREFVEVTFGNDNDIRLSLSKEENVLLVGGRAYLPAEDFVLAEF 62

Query: 44  IPAY-------MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFE 96
              Y        SA+  + P++E    P             Y +       + ++   + 
Sbjct: 63  FDRYVKMAFIDYSAIKETAPRKEEDKRPPLPEG--------YLEKLQQVRYSDHTVRVYT 114

Query: 97  SYFDQIIRKSGDFDYRKITTKHIRSG----VESRKHTPSSAIQFLTSMRVLFKWAVRQEY 152
           SYF    +         +T   I       +  +  +     Q + +++  ++  + QE 
Sbjct: 115 SYFRDFQQHFEGRKIETVTPGEINDYLLYLIHEKNISSCQQNQRINAIKFYYEKVLGQER 174

Query: 153 VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRA 212
                C  V R KR+       +KE++++         +    F  L  +GLR S+    
Sbjct: 175 R----CYKVNRAKREKTLPDVLSKEEIKKILDATVTDLRFFCMFSILYSAGLRISELLEL 230

Query: 213 GVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLL---AMTPIGKETFFINNDKQKMNAT 267
               +  +     ++  K        L    MK L         K   F +   +    +
Sbjct: 231 KPGDINESRSLIRVRQGKGKKDRYTLLSKPLMKKLTEYNRLYKPKVWLFEHRPGEPFTES 290

Query: 268 QFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
             S   KA A +AG+ K    H +R   AT   + G     +    G   +   E Y   
Sbjct: 291 IVSKRLKAAAREAGITKRIYPHLLRHSFATHLLEQGTDIKIVKELMGHNNIKTTERYVHI 350

Query: 326 AD 327
           AD
Sbjct: 351 AD 352


>gi|295426272|ref|ZP_06818932.1| tyrosine recombinase XerC [Lactobacillus amylolyticus DSM 11664]
 gi|295064011|gb|EFG54959.1| tyrosine recombinase XerC [Lactobacillus amylolyticus DSM 11664]
          Length = 307

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 48/278 (17%), Positives = 109/278 (39%), Gaps = 29/278 (10%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQ----IIRKSGDFDYRKITTKHIR---SGVES 125
            L   Y K+      + N+ +S+++   +         G  D+ KI T+ I      +  
Sbjct: 8   ALFISYLKNER--QYSKNTILSYQTDLLEAKSFWRENGGFVDWDKIQTRDIEVYLQSMAE 65

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           RK + +S ++ ++S+R  +++  +++ + ++P  ++     + +  + +   +M+Q  S 
Sbjct: 66  RKLSRNSQMRKMSSLRSFYRFLAKRKLIKVDPTQTIVLRTEERKLPQFFYAPEMKQVISS 125

Query: 186 WSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-------------K 228
               +    +    FE    +G+R S+     +  +  ++  I                K
Sbjct: 126 LQGNTALTERNLALFELFYTTGMRVSEVSSLKINQVDFDLQMILVHGKGNKDRYVAFDDK 185

Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--A 286
           T + +   L +   KLL  +   ++  F+NN  Q +         +    KAG++     
Sbjct: 186 TKSALQNYLENARPKLL-GSKADQDFIFLNNQGQPLTDRGIEYIMQRTFNKAGISGKVHP 244

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           H +R   AT   + GA    +    G + +   + YT 
Sbjct: 245 HELRHTFATAMLNNGADLRTVQELLGHENLSTTQIYTH 282


>gi|319892267|ref|YP_004149142.1| Site-specific tyrosine recombinase [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317161963|gb|ADV05506.1| Site-specific tyrosine recombinase [Staphylococcus pseudintermedius
           HKU10-03]
          Length = 303

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 35/262 (13%), Positives = 88/262 (33%), Gaps = 20/262 (7%)

Query: 88  AVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRV 142
           + ++  ++     Q        +     ++ I  ++    +       ++  + ++++R 
Sbjct: 26  SDHTLKAYHDDLVQFNRFLAQEQLSLTAFKYIDARNYLQTLYDLGLQRTTVSRKISTLRS 85

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFEF 198
            + + + Q++  +NP + +  PK++      +  E+M+           +G + R+  E 
Sbjct: 86  FYAFWMTQDHEIVNPFVQLVHPKKERYLPTFFYTEEMEALFQTVMQDAHKGLRDRVILEL 145

Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE--------LPDGFMKLLAMTP 249
              +G+R S+      + +   +  IK   K G    V         +     +   +  
Sbjct: 146 FYATGIRVSELVSLKTEDVDLEMCWIKVLGKGGKERIVPFGEFCRQSIEQYLAEFAPIQN 205

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATK-AGVN-KSAHGVRKFSATISADAGATAHEL 307
           +       N   Q +              + AGV     H +R   AT   + GA    +
Sbjct: 206 VQHPYLITNLKGQPITERGVRYVLNDIVKRTAGVTSIHPHKLRHTFATHLLNEGADLRTV 265

Query: 308 MATYGWKTVDQAETYTKGADRI 329
            +  G   +     YT   ++ 
Sbjct: 266 QSLLGHVNLSTTGRYTHVTNQQ 287


>gi|313669090|ref|YP_004049374.1| integrase/recombinase [Neisseria lactamica ST-640]
 gi|313006552|emb|CBN88016.1| putative integrase/recombinase [Neisseria lactamica 020-06]
          Length = 302

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 37/278 (13%), Positives = 86/278 (30%), Gaps = 21/278 (7%)

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGV 123
           P         Y ++      + ++  ++    ++++ +          + ++ +   + +
Sbjct: 3   PDGFAAHFDAYLENIVREGKSEHTVAAYRRDLEELLAQMPSEAEGGVPQDLSRRDFTAAL 62

Query: 124 ES---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                R     +  + L+S R    W V++  +  +P   +  PK+     +   +E + 
Sbjct: 63  RRLSQRGLNARTLARKLSSWRQYCAWLVKRGLMRADPTAGISPPKQPQRIPKALPQEWLN 122

Query: 181 QFKSF-----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIIT 234
           +              +    FE +  SGLR S+        +  +   +     G     
Sbjct: 123 RMLDLPVDGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGKGRKQRQ 182

Query: 235 VELPDGFMKL------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK--AGVNKSA 286
           V L     +       L  T    +  F   +  +++  Q        A     G + S 
Sbjct: 183 VPLTGKSAEALKNYLPLRQTASDGKALFTGRNGTRLSQRQIQKRLAQWAAINGDGRHVSP 242

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           H +R   A     A      +    G  ++   + YTK
Sbjct: 243 HMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTK 280


>gi|315644277|ref|ZP_07897447.1| hypothetical protein PVOR_02010 [Paenibacillus vortex V453]
 gi|315280652|gb|EFU43941.1| hypothetical protein PVOR_02010 [Paenibacillus vortex V453]
          Length = 348

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 53/325 (16%), Positives = 111/325 (34%), Gaps = 42/325 (12%)

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISF----ESYFDQIIRKSGDF 109
           +   RE I +      +L+  +    K     +L   +   +      + + I  + G+ 
Sbjct: 9   TAGAREPIANVALPSYSLQEAVEFVVKIKRANNLKERTISGYIQNMNYFIEWITERYGEI 68

Query: 110 DYRKITTKHIRSGV---------------------ESRKHTPSSAIQFLTSMRVLFKWAV 148
             R++T   +R  V                          +P+S    +   +  F    
Sbjct: 69  TIREVTADLLREYVLWCATDKEYYAGHPFKAEYEKGKLGLSPASVNVRIRVFKTFFAVLH 128

Query: 149 RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGL 204
            +E +  NP ++V   ++  + I P + E++++F     +      +  +    +L +GL
Sbjct: 129 EEEVIDRNPAVNVSLLRQDIDTIMPLSDEELRRFMKSPDQRQWAQWRDYVIMTLILDTGL 188

Query: 205 RCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELP------DGFMKLLAMTPIGKET-- 254
           R  + C      +       ++   K     +  LP          +L+A T    +T  
Sbjct: 189 RLGEICALEKMEIDFVKKSITLPASKNKNRKSRMLPLSTETARLLKQLIAETERNFDTTY 248

Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYG 312
            F  N  ++++       F   A KA + +  S H +R   AT++A+ G +   L    G
Sbjct: 249 VFTTNYGEQLSEKTIQKSFDKYAEKAKLGRNVSPHVLRHNFATMAAENGMSVFHLQKLMG 308

Query: 313 WKTVDQAETYTKGADRIRLGIKNSR 337
              +     Y        L  ++ R
Sbjct: 309 HADIATTRKYV-QISEGSLAEEHKR 332


>gi|329910273|ref|ZP_08275268.1| site-specific recombinase, phage integrase family [Oxalobacteraceae
           bacterium IMCC9480]
 gi|327546222|gb|EGF31261.1| site-specific recombinase, phage integrase family [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 356

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 58/316 (18%), Positives = 107/316 (33%), Gaps = 26/316 (8%)

Query: 32  RIRLPYPHESTF---IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLA 88
           R+R   P  +TF     A   A       +   +    K  T++ L+  Y KSA   +L 
Sbjct: 22  RLRGQAPETATFERLTDAKEWAKKTEADMKAGRHFGISKRHTVEELLDRYEKSA-LPALK 80

Query: 89  VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP----------SSAIQFLT 138
                S ++  D    + G      +T   I    +    TP          +   + L 
Sbjct: 81  SA--ESVKAKLDFWRERHGKNLLSDMTPDVIAKARDKLASTPKQRGGGIRSAADVNRTLA 138

Query: 139 SMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW--SEGSQPRLA 195
           ++     +AV++  ++  NP   V +       +R  + +++  F      S  S   LA
Sbjct: 139 ALSSACGFAVKELGWLERNPMERVRKGAEAKGRVRFLSSDELPLFLKACRDSANSHLYLA 198

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFS--IKTQKTGTIITVELPDGFMKLLAMTPI--- 250
               L +G R S+      + +     +  +   K G    + L    + LL  +     
Sbjct: 199 VVLALTTGGRKSEVMSLRWRQIDMKRRTAMLGDTKNGDARALPLSGEALALLQASATVRA 258

Query: 251 -GKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELM 308
              +  F    + K         F      AG+ +   H +R  +A+  A AG +  E+ 
Sbjct: 259 LDDDRLFPPKPRGKSEFMDLRAPFDGALKVAGITDFHWHDLRHTAASYLAMAGTSPLEIA 318

Query: 309 ATYGWKTVDQAETYTK 324
              G +T+     Y+ 
Sbjct: 319 KVLGHRTMAMVARYSH 334


>gi|148978770|ref|ZP_01815150.1| site-specific tyrosine recombinase XerC [Vibrionales bacterium
           SWAT-3]
 gi|145962191|gb|EDK27475.1| site-specific tyrosine recombinase XerC [Vibrionales bacterium
           SWAT-3]
          Length = 310

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 39/268 (14%), Positives = 94/268 (35%), Gaps = 22/268 (8%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGV---ESRKHTP 130
           EY +S     L+++++ +++   + +       G  D+R++    +R             
Sbjct: 22  EYLRSE--KGLSLHTQRNYKQQLETMAEHLVTLGLKDWRQVDAAWVRQLASKGMRDGMKA 79

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WS 187
           SS    L+S+R  F + V +  +  NP   V  P+++    +    +++ Q         
Sbjct: 80  SSIATRLSSLRSFFDFLVLRGEITANPAKGVSAPRKQRPLPKNLDVDEVGQLLDVNEDDP 139

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELP 238
              + R   E +  +GLR ++     ++ + +    I+    G               + 
Sbjct: 140 LSIRDRAMMEVMYGAGLRLAELVGINLKDVLSRQGEIRVIGKGDKERKAPFSGLAKEWVD 199

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATI 296
                   +   G++  F++    +++        +    K  V  + S H +R   AT 
Sbjct: 200 KWLRVRGELASPGEDALFVSKLGTRISHRSVQKRMEEWGKKQSVASHISPHKLRHSFATH 259

Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324
             ++      +    G + +   + YT 
Sbjct: 260 VLESSQNLRTVQELLGHENISTTQVYTH 287


>gi|89074452|ref|ZP_01160929.1| tyrosine recombinase [Photobacterium sp. SKA34]
 gi|89049740|gb|EAR55290.1| tyrosine recombinase [Photobacterium sp. SKA34]
          Length = 302

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 38/268 (14%), Positives = 87/268 (32%), Gaps = 22/268 (8%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV------ESRKHTP 130
           EY +S     L+++++ +++    +I  +  +                            
Sbjct: 15  EYLRSER--ELSLHTQQNYKRQLTRIAEQLVELSVDNWQQVDAGWVRQIASKGMRDGLKA 72

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WS 187
           SS    L+++R  F + V Q  +  NP   V  P++     +    ++M Q         
Sbjct: 73  SSLAMRLSALRSFFDFLVHQNVLKANPAKGVAAPRKARPLPKNLDVDEMNQLLDVNDDDP 132

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLA 246
              + R   E +  +GLR ++     V+H+  +   ++   K      V       + +A
Sbjct: 133 LAIRDRAMMELMYGAGLRLAELVGIDVRHISLSKGDLRVIGKGDKERVVPFSGLAREWVA 192

Query: 247 --------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATI 296
                   +    +   F++    +++             K  V  + + H +R   AT 
Sbjct: 193 KWLKLRDNIALAEEPALFVSKLGTRISTRNVQKRMAEWGQKQAVSSHINPHKLRHSFATH 252

Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324
             ++      +    G   +   + YT 
Sbjct: 253 MLESSGDLRAVQELLGHANLSTTQIYTH 280


>gi|289578357|ref|YP_003476984.1| integrase [Thermoanaerobacter italicus Ab9]
 gi|297544634|ref|YP_003676936.1| integrase family protein [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|289528070|gb|ADD02422.1| integrase family protein [Thermoanaerobacter italicus Ab9]
 gi|296842409|gb|ADH60925.1| integrase family protein [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 328

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 46/251 (18%), Positives = 87/251 (34%), Gaps = 25/251 (9%)

Query: 99  FDQIIRKSGDFDYRKITTKHIRSGV-------ESRKHTPSSAIQFLTSMRVLFKWAVRQ- 150
           FD+I     D D   I +  +             R +TP +  + + S+R  + +  ++ 
Sbjct: 65  FDEI--DISDVDVDLIESVDLNDLYAYLNFVTNERSNTPPARARKVASLRSFYDYLYKKA 122

Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR--LAFEFLLYSGLRCSD 208
           + +  NP   +E PK         T ++ ++         + R        L  GLR S+
Sbjct: 123 KVINKNPTQELESPKLSVRQPIYLTLDESKKLLDSIDGPFKERDYAIITLFLNCGLRVSE 182

Query: 209 SCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI--------GKETFFINND 260
                +  ++++  ++   K     TV L D  +  +              K+  F++  
Sbjct: 183 LVNINIDDIKDDKLTVI-GKGNKQRTVYLNDACINAINAYLRVRPKEGVKDKKALFLSKR 241

Query: 261 KQKMNATQFSIWFKAKATKA---GVNKSAHGVRKFSATISADAG-ATAHELMATYGWKTV 316
            ++++        K     A   G   SAH +R  +AT+    G      L    G   V
Sbjct: 242 LKRISVKTVQYTVKKHLKNANLGGKKYSAHKLRHTAATLMYRYGNVDIRTLQKLLGHSNV 301

Query: 317 DQAETYTKGAD 327
              + YT   D
Sbjct: 302 STTQIYTHVDD 312


>gi|229520080|ref|ZP_04409508.1| tyrosine recombinase XerC [Vibrio cholerae TM 11079-80]
 gi|229342868|gb|EEO07858.1| tyrosine recombinase XerC [Vibrio cholerae TM 11079-80]
          Length = 311

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 38/278 (13%), Positives = 94/278 (33%), Gaps = 21/278 (7%)

Query: 68  PTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSGV 123
           P  L   +  +    H    L++ ++ +++   + + +   + G   + ++ +  +R  V
Sbjct: 10  PDALAQPLERFYAYLHTEKGLSLYTQRNYKQQLETMTQYLVQVGLTHWTQLDSAWVRQLV 69

Query: 124 ESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
              K      SS    L+S+R    + + +  +  NP   V  P+++    +    ++M 
Sbjct: 70  MQGKRQGMKASSIATRLSSLRSFLDFLILRGELEANPAKGVSAPRKQRTLPKNLDVDEMA 129

Query: 181 QFKSFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---IT 234
           Q            + R   E +  +GLR ++     V+ +  +   I+    G     + 
Sbjct: 130 QLLEVTDDDPLSIRDRAIMELMYGAGLRLAELVSIDVKDVNLSEGEIRVIGKGNKERKVW 189

Query: 235 V------ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286
                   +         +    +   F++    +++             K  V  + S 
Sbjct: 190 FAGQAQEWVGKWLKLRSQLADSAETALFVSKLGTRISHRSVQKRMAEWGQKQAVASHISP 249

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           H +R   AT   ++      +    G + +   + YT 
Sbjct: 250 HKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTH 287


>gi|209560015|ref|YP_002286487.1| Prophage NZ131.3 probable integrase [Streptococcus phage NZ131.3]
 gi|209541216|gb|ACI61792.1| Prophage NZ131.3 probable integrase [Streptococcus phage NZ131.3]
          Length = 378

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 69/375 (18%), Positives = 134/375 (35%), Gaps = 48/375 (12%)

Query: 14  ERTRHGKII---YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY-INSPRKKPT 69
           E+  +G I    YY     G+R R     +     +   A        EY I S   +  
Sbjct: 4   EKQANGNIKFIEYYKDPYTGKRQRAYVTLDRYTKQSETKARRLLNEIIEYRIKSSGDQFV 63

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-FDYRKITTKHIRSGVESRKH 128
               L+ E++ S    ++   +   +    ++I    GD    + I  + ++  ++  K 
Sbjct: 64  RFGQLVEEWKTSHS-KTVKARTMKVYRHPIEKIKDFIGDDVLVKNIDARLLQKFIDYLKD 122

Query: 129 T--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE-----GIRPWTKED--- 178
               ++       + ++  +AVR EY+  NP  +V  PKRK         R    E    
Sbjct: 123 RYSDNTINLIKQPLNMMLDYAVRMEYIMSNPMKNVVTPKRKKMSKKQLEDRYLETEQNQK 182

Query: 179 -MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-------- 229
            ++Q ++    G+      E +  +G+R  +       H+      IK + T        
Sbjct: 183 IIEQLRN-PIYGNHIANFSEIIFLTGMRPGELLALRWDHIDFEKLKIKIEYTLDYTTNGH 241

Query: 230 -----------GTIITVELPDGFMKLL-------AMTPIGKETFFINNDKQKMNATQFSI 271
                      G+  T+++P    +LL           +  +  FI N  + ++    + 
Sbjct: 242 ANAELGSVKNDGSYRTIDIPLRVKELLVEELNYQNTNDLRSDFVFITNKGKHLSINTINR 301

Query: 272 WFKAKATKA-GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRI 329
             K  + K  G+  ++H  R    T+ A+ G     +M   G   V+   + YT   D  
Sbjct: 302 RIKKTSEKLYGIVITSHSFRHAHITLLAELGIPLKSIMDRVGHTDVNTTIKVYTHATD-- 359

Query: 330 RLGIKNSRRISSVVD 344
           ++G +   +I+  V 
Sbjct: 360 KIGKQMMDKINKFVP 374


>gi|15800482|ref|NP_286494.1| putative integrase encoded by prophage CP-933K; partial
           [Escherichia coli O157:H7 EDL933]
 gi|12513708|gb|AAG55102.1|AE005255_3 putative integrase encoded by prophage CP-933K; partial
           [Escherichia coli O157:H7 str. EDL933]
          Length = 287

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 51/279 (18%), Positives = 99/279 (35%), Gaps = 26/279 (9%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRI---SFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127
           +  LI+  + S        +SR    ++ S    I R   D     ITTK I + +    
Sbjct: 8   IHGLIATKKSSPA----EESSRRHFINYMSKIKAIRRGLPDAPLEDITTKEIAAMLNGYI 63

Query: 128 H--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
                +SA    +++   F+ A+ + ++  NP  +    K +    R    E ++ +++ 
Sbjct: 64  DEGKAASAKLIRSTLSDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEYLKIYQAA 123

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE--------- 236
            S     RLA E  + +G R  D C      + +    ++  KTG  I +          
Sbjct: 124 ESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTTLHVDALG 183

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NKSAHGVRK 291
           +            +G ET   +  ++ +++   S +F      +G+       + H +R 
Sbjct: 184 ISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPPTFHELR- 242

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
             +    +   +        G K+   A  Y    DR R
Sbjct: 243 SLSARLYEKQISDKFAQHLLGHKSDTMASQY--RDDRGR 279


>gi|315604216|ref|ZP_07879282.1| tyrosine recombinase XerD [Actinomyces sp. oral taxon 180 str.
           F0310]
 gi|315313922|gb|EFU61973.1| tyrosine recombinase XerD [Actinomyces sp. oral taxon 180 str.
           F0310]
          Length = 316

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 41/264 (15%), Positives = 87/264 (32%), Gaps = 21/264 (7%)

Query: 82  AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMR 141
           +++   A       ES     +      D  +         V  R   PSS  +   ++R
Sbjct: 27  SNYLRDASRYVRDMESRGRATLTDVSAHDVEEHLAGLASGQVSGRPAAPSSVARACAAIR 86

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-----SEGSQPRLAF 196
            L ++A+ +  + ++    +  P++ +   +  + +++ +            G +     
Sbjct: 87  GLHRYALAEGVLNVDVTAQLRAPRQGSHLPKALSVDEVGRLLDAAHADDTPIGLRDAALL 146

Query: 197 EFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKT--QKTGTIITVELPD-----------GFM 242
           E L  +G R S++       L  +    +     K      V +                
Sbjct: 147 ELLYATGARVSEAVALSADDLDLDGQVPVVRLFGKGRKERIVPVGSFAIEALDAYRVRAR 206

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
            +LA    G    F+N+    ++        +  A  A +    S H +R   AT   + 
Sbjct: 207 PVLAARGSGSTALFLNSRGSALSRQSAWTAIRRAAQAANLAHRVSPHTLRHSFATHLLEG 266

Query: 301 GATAHELMATYGWKTVDQAETYTK 324
           GA+  E+    G  +V   + YT+
Sbjct: 267 GASVREVQELLGHASVATTQIYTR 290


>gi|291515144|emb|CBK64354.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
          Length = 372

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 54/318 (16%), Positives = 99/318 (31%), Gaps = 30/318 (9%)

Query: 28  GHGRRIRLPYPHESTFIPAY-------MSALTGSTPKREYINSPRKKPTTLKWLISEYRK 80
           G    +       + F   Y        SA+  + P++E    P             Y +
Sbjct: 47  GGRAYLPAEDFVLAEFFDRYVKMAFIDYSAIKETAPRKEEDKRPPLPEG--------YLE 98

Query: 81  SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG----VESRKHTPSSAIQF 136
                  + ++   + SYF    +         +T   I       +  +  +     Q 
Sbjct: 99  KLQQVRYSDHTVRVYTSYFRDFQQHFEGRKIETVTPGEINDYLLYLIHEKNISSCQQNQR 158

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196
           + +++  ++  + QE      C  V R KR+       +KE++++         +    F
Sbjct: 159 INAIKFYYEKVLGQERR----CYKVNRAKREKTLPDVLSKEEIKKILDVTVTDLRFFCMF 214

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLL---AMTPIG 251
             L  +GLR S+        +  +     ++  K        L    MK L         
Sbjct: 215 SILYSAGLRISELLELKPGDINESRSLIRVRQGKGKKDRYTLLSRPLMKKLTEYNRLYKP 274

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMA 309
           K   F +   +    +  S   KA A +AG+ K    H +R   AT   + G     +  
Sbjct: 275 KVWLFEHRPGEPFTESIVSKRLKAAAREAGITKRIYPHLLRHSFATHLLEQGTDIKIVKE 334

Query: 310 TYGWKTVDQAETYTKGAD 327
             G   +   E Y   AD
Sbjct: 335 LMGHNNIKTTERYVHIAD 352


>gi|229815095|ref|ZP_04445432.1| hypothetical protein COLINT_02137 [Collinsella intestinalis DSM
           13280]
 gi|229809325|gb|EEP45090.1| hypothetical protein COLINT_02137 [Collinsella intestinalis DSM
           13280]
          Length = 333

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 47/273 (17%), Positives = 93/273 (34%), Gaps = 27/273 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----SRKHTPSSA--IQFLT 138
            +LA N+  ++E      +   G+   R+      R   +     R    + A   + L+
Sbjct: 51  RNLAANTIAAYERDLRAYLAFLGERGTRRPDDVIRRDVEDFVAAKRADHAADASVNRALS 110

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FWSEGSQPRL 194
           +++   ++ VR+   ++NP  ++  PK         + E  ++         + G + R 
Sbjct: 111 AVKGFHRFMVREGLSSVNPTATLRVPKMGDHLPDVISIEAAERLLDQDFPATAAGMRDRA 170

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDGFMKLL-------- 245
             E L   GLR S+ C   V  +  +   ++    G+    V L     ++L        
Sbjct: 171 VLEVLYGCGLRASELCGLDVNEVYLDEGFVRVMGKGSKERLVPLVGTARRVLGTYLAEAR 230

Query: 246 ------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISA 298
                   +       F+N    +++        +      G++    H +R   AT   
Sbjct: 231 SELFSHTRSASASAAVFLNMRGTRLSRQSVHAICERYGRMVGIDGLHPHTLRHSFATHML 290

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
             GA    L    G   +   + YT   DR +L
Sbjct: 291 AGGADLRALQEILGHADIATTQIYTH-IDRTQL 322


>gi|170730010|ref|YP_001775443.1| site-specific tyrosine recombinase XerC [Xylella fastidiosa M12]
 gi|167964803|gb|ACA11813.1| site-specific recombinase [Xylella fastidiosa M12]
          Length = 277

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 42/255 (16%), Positives = 84/255 (32%), Gaps = 17/255 (6%)

Query: 87  LAVNSRISFESYFDQIIR------KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSM 140
           ++ ++  ++      +I               +   +   S    R  +P S  + L++ 
Sbjct: 1   MSAHTLDAYRRDIGALIAWGGQQVVGDVVVLDRAQLQAFVSAEHRRGLSPKSLQRRLSAC 60

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WSEGSQPRLAFE 197
           R  + W V+  ++A+NP   +  PK   +  R    ++   F         G + R   E
Sbjct: 61  RGFYAWLVKSGHIAVNPAAGLRAPKALRKLPRILDADEAVSFVQIPTDTPLGLRDRALLE 120

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-----ELPDGFMKLLAMTPIGK 252
               SGLR S+ C      L  +   +     G+   V            +  A +  G 
Sbjct: 121 LFYSSGLRLSELCGLRWDGLDLDAGLVSVLGKGSRQRVVPVGSYALSALREWCASSGGGA 180

Query: 253 -ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMA 309
            +  F       ++A    +  K  A + G+ K    H +R   A+   ++      +  
Sbjct: 181 QQPVFPGRYGGPISARAVQVRIKQLAQRQGMAKHVHPHMLRHSFASHLLESSGDLRGVQE 240

Query: 310 TYGWKTVDQAETYTK 324
             G   +   + YT 
Sbjct: 241 LLGHADITTTQIYTH 255


>gi|153830013|ref|ZP_01982680.1| tyrosine recombinase XerC [Vibrio cholerae 623-39]
 gi|148874498|gb|EDL72633.1| tyrosine recombinase XerC [Vibrio cholerae 623-39]
          Length = 311

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 38/278 (13%), Positives = 94/278 (33%), Gaps = 21/278 (7%)

Query: 68  PTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSGV 123
           P  L   +  +    H    L++ ++ +++   + + +   + G   + ++ +  +R  V
Sbjct: 10  PDALAQPLERFYAYLHTEKGLSLYTQRNYKQQLETMTQYLVQVGLTHWSQLDSAWVRQLV 69

Query: 124 ESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
              K      SS    L+S+R    + + +  +  NP   V  P+++    +    ++M 
Sbjct: 70  MQGKRQGMKASSIATRLSSLRSFLDFLILRGELEANPAKGVSAPRKQRTLPKNLDVDEMA 129

Query: 181 QFKSFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---IT 234
           Q            + R   E +  +GLR ++     V+ +  +   I+    G     + 
Sbjct: 130 QLLEVTDDDPLSIRDRAIMELMYGAGLRLAELVSIDVKDVNLSEGEIRVIGKGNKERKVW 189

Query: 235 V------ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286
                   +         +    +   F++    +++             K  V  + S 
Sbjct: 190 FAGQAQEWVGKWLKLRSQLADSAETALFVSKLGTRISHRSVQKRMAEWGQKQAVASHISP 249

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           H +R   AT   ++      +    G + +   + YT 
Sbjct: 250 HKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTH 287


>gi|71274748|ref|ZP_00651036.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella
           fastidiosa Dixon]
 gi|71901196|ref|ZP_00683299.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella
           fastidiosa Ann-1]
 gi|71164480|gb|EAO14194.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella
           fastidiosa Dixon]
 gi|71729040|gb|EAO31168.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella
           fastidiosa Ann-1]
          Length = 277

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 42/255 (16%), Positives = 84/255 (32%), Gaps = 17/255 (6%)

Query: 87  LAVNSRISFESYFDQIIR------KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSM 140
           ++ ++  ++      +I               +   +   S    R  +P S  + L++ 
Sbjct: 1   MSAHTLDAYRRDIGALIAWGGQQVVGEVVVLDRAQLQAFVSAEHRRGLSPKSLQRRLSAC 60

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WSEGSQPRLAFE 197
           R  + W V+  ++A+NP   +  PK   +  R    ++   F         G + R   E
Sbjct: 61  RGFYAWLVKSGHIAVNPAAGLRAPKALRKLPRILDADEAVSFVQIPTDTPLGLRDRALLE 120

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-----ELPDGFMKLLAMTPIGK 252
               SGLR S+ C      L  +   +     G+   V            +  A +  G 
Sbjct: 121 LFYSSGLRLSELCGLRWDGLDLDAGLVSVLGKGSRQRVVPVGSYALSALREWCASSGGGA 180

Query: 253 -ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMA 309
            +  F       ++A    +  K  A + G+ K    H +R   A+   ++      +  
Sbjct: 181 QQPVFPGRYGGPISARAVQVRIKQLAQRQGMAKHVHPHMLRHSFASHLLESSGDLRGVQE 240

Query: 310 TYGWKTVDQAETYTK 324
             G   +   + YT 
Sbjct: 241 LLGHADITTTQIYTH 255


>gi|39995600|ref|NP_951551.1| PfpI family intracellular peptidase [Geobacter sulfurreducens PCA]
 gi|39982363|gb|AAR33824.1| site-specific recombinase, phage integrase family [Geobacter
           sulfurreducens PCA]
 gi|298504620|gb|ADI83343.1| site-specific recombinase, XerC [Geobacter sulfurreducens KN400]
          Length = 294

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 52/266 (19%), Positives = 93/266 (34%), Gaps = 23/266 (8%)

Query: 85  GSLAVNSRISFESYFDQIIR--------KSGDFDYRKITTKHIRSGVESRKHTPSSAIQF 136
            +++ ++R ++ES   Q            +G      +  +   + +  + H  SS  + 
Sbjct: 16  RAVSPHTRAAYESDLAQFRDFVRGELGAGAGAAAISHLLVRRWLAQLH-QSHARSSIGRK 74

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG----SQP 192
           L ++R  F + VR   +  NP   V  PKR+ +       +++        E      + 
Sbjct: 75  LAAVRAFFTYLVRTGALPRNPAELVSTPKREKKVPFHLNIDEVTALVESPREPGVLSLRD 134

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPD----GFMKLLAM 247
           R   E L   G+R S+     V  +     +++   K G    V +           LA 
Sbjct: 135 RAILETLYSCGVRVSELTGLNVGGIDLADGTVRVLGKGGKERVVPIGSHARLALSSYLAA 194

Query: 248 T--PIGKETFFINNDKQKMNATQFSIWF-KAKATKAGVNK-SAHGVRKFSATISADAGAT 303
              P  +   F N    ++ A        K     A + K S H +R   AT   + GA 
Sbjct: 195 RNHPPLEVPLFTNARGGRLTARSVRRVVDKHILKVAAMRKISPHTLRHTFATHLLEGGAD 254

Query: 304 AHELMATYGWKTVDQAETYTK-GADR 328
              +    G  ++   + YT  G DR
Sbjct: 255 LRAIQELLGHASLSTTQKYTHVGIDR 280


>gi|78189085|ref|YP_379423.1| tyrosine recombinase XerD [Chlorobium chlorochromatii CaD3]
 gi|78171284|gb|ABB28380.1| Tyrosine recombinase XerD [Chlorobium chlorochromatii CaD3]
          Length = 304

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 40/265 (15%), Positives = 92/265 (34%), Gaps = 25/265 (9%)

Query: 85  GSLAVNSRISFESYFDQ--IIRKSGDFDYRKITTK---HIRSGVESRKHTPSSAIQFLTS 139
            + + N+R S+ +   +  +  +       +IT+K      + + +     +S  + +++
Sbjct: 23  RNFSANTRSSYHNDLHRYLLFVQEQATPIAEITSKVIDRFLAELVALGLETTSMARNIST 82

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFWSEGS---QP 192
           +R   K+   +   + NP   +  PK+           +    ++         +   + 
Sbjct: 83  IRSFHKFLHNERLSSNNPAERLHLPKKAHYLPAVLNLSETLALLEAPSIMQPAPTYALRD 142

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM---- 247
           R   E L  +G+R ++      +HL ++   I+   K      V +       +      
Sbjct: 143 RAMLELLYATGVRATELISIQQEHLYSDAGFIRIFGKGSKERLVPIGASATLWVQRYQKE 202

Query: 248 ------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISAD 299
                      +  F+N+   K++        K  +  AG+ KS   H +R   AT   +
Sbjct: 203 LRVQLVKAHSNDFLFLNSRGGKLSRMSLFEMVKTYSVVAGITKSISPHTLRHTFATHLIE 262

Query: 300 AGATAHELMATYGWKTVDQAETYTK 324
            GA    +    G  ++   + YT 
Sbjct: 263 GGADLRAVQEMLGHSSIVTTQIYTH 287


>gi|310766564|gb|ADP11514.1| site-specific tyrosine recombinase XerC [Erwinia sp. Ejp617]
          Length = 344

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 58/315 (18%), Positives = 112/315 (35%), Gaps = 31/315 (9%)

Query: 64  PRKKPTTLKWLI---SEYRKSAHWGS--LAVNSRISFESYFDQIIRKSGDFD--YRKITT 116
           P   P +L  L+    ++R+  +W    L V +   +        R         R +  
Sbjct: 24  PAHDPKSLYALLLRFVKWRRERNWSETTLKVQTHHGYRFICWAQERGIHHAADVTRPVLE 83

Query: 117 KHIRSGVESRKH-----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
           +  R   + RK      +P +    L  ++V F+W  +Q  +  NP   +E P+ +    
Sbjct: 84  RWQRHLWQYRKANGEPLSPRTQRTALQPLQVWFRWLAKQNLILANPAADLELPRLEKHLP 143

Query: 172 RP-WTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGV--QHLQNNIFSI 224
           R   + E +++  +        G + R   E L  +G+R  +  R           I +I
Sbjct: 144 RTILSVEQVEETVNLCDLTTLQGMRDRALLELLWSTGIRRGEVARLETWSADFSRKILTI 203

Query: 225 KTQKTGTIITVELPDGFMKLLA----------MTPIGKETFFINNDK-QKMNATQFSIWF 273
              K      + + +  +  L           +   G +  F+  D    + A   +   
Sbjct: 204 VQGKGKQDRVIPVGERALWWLRHYLHEVRPEIVAVAGCKALFVAMDGVAGLTANGITHAV 263

Query: 274 KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
                 AG+ K S H  R   AT   + GA    + A  G ++V+  + YT+ + R    
Sbjct: 264 VPYLRAAGIEKGSCHLFRHAMATQMLENGADLRWIQAMLGHRSVESTQIYTQVSIRALQA 323

Query: 333 IKNSRRISSVVDSDD 347
           +  S   +   ++D+
Sbjct: 324 VHASTHPAEQTEADN 338


>gi|206971545|ref|ZP_03232495.1| DNA integration/recombination/invertion protein [Bacillus cereus
           AH1134]
 gi|206733530|gb|EDZ50702.1| DNA integration/recombination/invertion protein [Bacillus cereus
           AH1134]
          Length = 369

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 45/312 (14%), Positives = 108/312 (34%), Gaps = 38/312 (12%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE 124
               TLK  ++ + +     S+  ++   ++++ +  +I   G     K+   HI+   +
Sbjct: 60  PSKVTLKDYLNHWLEIKS-MSIQKSTFAGYKAFINQHVIPSIGMVALHKLNVMHIQKCYK 118

Query: 125 SRKHTPSSAIQFLTSMRVL---FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
           +      +    L   R+L      A++Q  ++ NP    E PK++   I+ WT++++++
Sbjct: 119 TAIDKGITNNSILLMHRILKSALNLAIKQNILSRNPAAFAEIPKKEKTPIQTWTEDEVKK 178

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--------------NNIFSIKTQ 227
           F    S+ S+  + +   + +G+R  +      Q +               +N      +
Sbjct: 179 FL-LHSQESRYHIGYLLAITTGMRMGEVLGLRWQDVDFEKHTVTINQTSGHDNKIKKTAK 237

Query: 228 KTGTIITVELPDGFMKLLAMTPI--------------GKETFFINNDKQKMNATQFSIWF 273
              +  T+ +P   ++ L    I               ++    N   + +    F   F
Sbjct: 238 TNSSKRTIPVPKETIESLKRHKILINKEKLRFGSAYLDQDLINCNEFGKIIKRAHFRKSF 297

Query: 274 KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRL 331
                K G+ +   H +R   AT+    G     +    G   +      Y+       +
Sbjct: 298 IRMTHKVGIKEIKFHDLRHTHATLLLKQGVNPKIISERLGHTDISMTLSVYSHVL--PNM 355

Query: 332 GIKNSRRISSVV 343
             +  +     +
Sbjct: 356 QEEAVKNFGKSI 367


>gi|163803624|ref|ZP_02197489.1| tyrosine recombinase [Vibrio sp. AND4]
 gi|159172572|gb|EDP57432.1| tyrosine recombinase [Vibrio sp. AND4]
          Length = 313

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 38/268 (14%), Positives = 95/268 (35%), Gaps = 22/268 (8%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGV---ESRKHTP 130
           E+ +S     L+++++ +++   + + +     G  D+ ++    +R             
Sbjct: 22  EFLRSE--KGLSLHTQRNYKQQLETMAQHLVEMGLKDWSQVDASWVRQLAGKGMREGMKA 79

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WS 187
           SS    L+S+R  F + + +  ++ NP   V  P++K    +    +++ Q        +
Sbjct: 80  SSVATRLSSLRSFFDFLILRGEMSANPAKGVSAPRKKRPLPKNLDVDEVSQLLEVNEGDA 139

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE--------LP 238
              + R   E +  +GLR ++     ++ +Q     ++   K      V         + 
Sbjct: 140 LAVRDRAMMELMYGAGLRLAELVSVDMRDIQLRSGELRVIGKGDKERKVPFSGMATEWVG 199

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATI 296
                   +   G+   F++    +++             K  V  + S H +R   AT 
Sbjct: 200 KWLRVRGDIAAPGEPALFVSKLGTRISHRSVQKRMAQWGQKQSVASHISPHKLRHSFATH 259

Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324
             ++      +    G + +   + YT 
Sbjct: 260 MLESSNNLRAVQELLGHENISTTQIYTH 287


>gi|212710173|ref|ZP_03318301.1| hypothetical protein PROVALCAL_01227 [Providencia alcalifaciens DSM
           30120]
 gi|212687172|gb|EEB46700.1| hypothetical protein PROVALCAL_01227 [Providencia alcalifaciens DSM
           30120]
          Length = 309

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 41/260 (15%), Positives = 86/260 (33%), Gaps = 20/260 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYR-----KITTKHIRSGVESRKHTPSSAIQF-LT 138
             L+  +  ++      + +  G+          IT     +    R    ++++   L+
Sbjct: 28  RRLSPVTITNYRRQLSVVCQILGELKVNQWQKLDITLGRSIAAKSRRTGLQAASMALRLS 87

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLA 195
           ++R    W V+Q  +  NP  ++  PK K    +    +++ Q  +         + R  
Sbjct: 88  ALRSFCDWMVQQGELPANPVKTLHAPKAKKRLPKNMDVDEISQLLNMDSGDPLVVRDRTM 147

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLAMT------ 248
            E +  +GLR S+     V+HL  ++       K      + L    +  L         
Sbjct: 148 LEVMYGAGLRLSELVGLDVKHLDLDLGEVWVMGKGSKERKIPLGKTAVSWLKRWLEMREL 207

Query: 249 --PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATA 304
             P+    F      ++++       F+    K  VN     H +R   AT   ++    
Sbjct: 208 YEPVDGAVFISTQSGKRISNRNVQKRFEQWGIKQEVNSHINPHKLRHSFATHILESSGNL 267

Query: 305 HELMATYGWKTVDQAETYTK 324
             +    G   +   + YT 
Sbjct: 268 RGVQELLGHANLSTTQIYTH 287


>gi|229527130|ref|ZP_04416524.1| tyrosine recombinase XerC [Vibrio cholerae 12129(1)]
 gi|229335361|gb|EEO00844.1| tyrosine recombinase XerC [Vibrio cholerae 12129(1)]
          Length = 311

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 38/278 (13%), Positives = 94/278 (33%), Gaps = 21/278 (7%)

Query: 68  PTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSGV 123
           P  L   +  +    H    L++ ++ +++   + + +   + G   + ++ +  +R  V
Sbjct: 10  PDALAQPLERFYAYLHTEKGLSLYTQRNYKQQLETMTQYLVQVGLTHWTQLDSAWVRQLV 69

Query: 124 ESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
              K      SS    L+S+R    + + +  +  NP   V  P+++    +    ++M 
Sbjct: 70  MQGKRQGMKASSIATRLSSLRSFLDFLILRGELEANPAKGVSAPRKQRTLPKNLDVDEMA 129

Query: 181 QFKSFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---IT 234
           Q            + R   E +  +GLR ++     V+ +  +   I+    G     + 
Sbjct: 130 QLLEVTDDDPLSIRDRAIMELMYGAGLRLAELVSIDVKDVNLSEGEIRVIGKGNKERKVW 189

Query: 235 V------ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286
                   +         +    +   F++    +++             K  V  + S 
Sbjct: 190 FAGQAQEWVGKWLKLRSQLADSAETALFVSKLGTRISHRSVQKRMAEWGQKQAVASHISP 249

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           H +R   AT   ++      +    G + +   + YT 
Sbjct: 250 HKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTH 287


>gi|183600284|ref|ZP_02961777.1| hypothetical protein PROSTU_03843 [Providencia stuartii ATCC 25827]
 gi|188020074|gb|EDU58114.1| hypothetical protein PROSTU_03843 [Providencia stuartii ATCC 25827]
          Length = 309

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 40/260 (15%), Positives = 91/260 (35%), Gaps = 20/260 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRK------ITTKHIRSGVESRKHTPSSAIQFLT 138
             L+  +  ++      ++    + +  +         +++ +    +    +S    L+
Sbjct: 28  RRLSPVTITNYRRQLTVVVEMLNEMNVSEWRQLDATKARNVAAKSRRKGLQAASMALRLS 87

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF---KSFWSEGSQPRLA 195
           ++R    W V+Q+ ++ NP  +V  PK K    +    +++ +    +S      + R  
Sbjct: 88  ALRSFCDWMVQQDKLSANPVTAVHAPKAKKRLPKNMDVDEVSKLLSMESGDPLVVRDRTM 147

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDGFMKLLAMT------ 248
            E +  +GLR S+     V+HL   +  ++    G+    + L    +  L         
Sbjct: 148 LEVMYGAGLRLSELVGLDVRHLDLAMGEVRVMGKGSKERKIPLGKTAVSWLKRWLEMREL 207

Query: 249 --PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATA 304
             P     F      ++++       F+    K GVN     H +R   AT   ++    
Sbjct: 208 YEPEDGAVFISTKSGKRISNRNVQKRFEQWGIKQGVNSHINPHKLRHSFATHILESSGNL 267

Query: 305 HELMATYGWKTVDQAETYTK 324
             +    G   +   + YT 
Sbjct: 268 RGVQELLGHANLSTTQIYTH 287


>gi|311068135|ref|YP_003973058.1| site-specific tyrosine recombinase XerC [Bacillus atrophaeus 1942]
 gi|310868652|gb|ADP32127.1| site-specific tyrosine recombinase XerC [Bacillus atrophaeus 1942]
          Length = 304

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 79/219 (36%), Gaps = 19/219 (8%)

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
            +  +  +  + ++++R  +K+ +R++ V  NP   V  PK++    +   ++++++  +
Sbjct: 65  EKGLSRRTISKKISALRSFYKFLMREKLVEENPFQLVHLPKQEKRIPKFLYQKELEELFA 124

Query: 185 F----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-------- 232
                   G + +   E L  +G+R S+     V  +   + ++     G          
Sbjct: 125 VSDTSLPTGQRDQALLELLYATGMRVSECSSLTVNGVDLFMDTVLVHGKGKKQRYIPFGS 184

Query: 233 -----ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG--VNKS 285
                + + +  G  +LL       +  F+N     +              KA   ++  
Sbjct: 185 YAHEALELYVNSGRQRLLEKAKESHDVLFVNQRGGPLTVRGVRYILSGLVKKASGTLHIH 244

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            H +R   AT   + GA    +    G   +   + YT 
Sbjct: 245 PHMLRHTFATHLLNEGADLRSVQELLGHSNLSSTQIYTH 283


>gi|307267401|ref|ZP_07548893.1| integrase family protein [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306917586|gb|EFN47868.1| integrase family protein [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 330

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 49/268 (18%), Positives = 91/268 (33%), Gaps = 25/268 (9%)

Query: 99  FDQIIRKSGDFDYRKITTKHIRSGV-------ESRKHTPSSAIQFLTSMRVLFKWAVRQ- 150
           FD+I     D D   I +  +             R +TP +  + + S+R  + +  ++ 
Sbjct: 66  FDEI--DISDVDVDLIESVDLNDLYAYLNFVANERSNTPPARARKVASLRSFYNYLYKKA 123

Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR--LAFEFLLYSGLRCSD 208
           + ++ NP   +E PK         T ++ ++  +      + R        L  GLR S+
Sbjct: 124 KVLSKNPTQELESPKLSVRQPIYLTLDESKKLLNSIDGPFKERDYAIITLFLNCGLRVSE 183

Query: 209 SCRAGVQHLQNNIFSIKTQKTGTIITVELPDG--------FMKLLAMTPIGKETFFINND 260
                +  ++++  ++   K     TV L D                    K+  F++  
Sbjct: 184 LVNINLDDIKDDKLTVI-GKGNKQRTVYLNDACINAINTYLKVRPKEGVKDKKALFLSKR 242

Query: 261 KQKMNATQFSIWFKAKATKA---GVNKSAHGVRKFSATISADAG-ATAHELMATYGWKTV 316
            ++++        K     A   G   SAH +R  +AT+    G      L    G   V
Sbjct: 243 LKRISVKTVQYTVKKHLKNANLEGKKYSAHKLRHTAATLMYRYGNVDIRTLQKLLGHSNV 302

Query: 317 DQAETYTKGADRIRLGIKNSRRISSVVD 344
              + YT   D       N   +S   D
Sbjct: 303 STTQIYTHVDDSQLKEAVNKNPLSQKED 330


>gi|332180702|gb|AEE16390.1| Tyrosine recombinase xerC [Treponema brennaborense DSM 12168]
          Length = 311

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 46/256 (17%), Positives = 93/256 (36%), Gaps = 23/256 (8%)

Query: 99  FDQIIRKSG----DFDYRKITTKHIRSGVESRKHTPS---SAIQFLTSMRVLFKWAVRQE 151
            D + +K      +    ++T + +   +  RK   +   +  + ++++R    + V + 
Sbjct: 45  LDWLQKKHPAESVEQALERVTVQDLLYYLVQRKTVGADELTIAKDISALRSFGNFLVARH 104

Query: 152 YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLAFEFLLYSGLRCS 207
             + N    +ERPK +    R  + E ++ F +        G + R  FE +   GLR S
Sbjct: 105 VWSENCACLLERPKARRALPRVLSPEQVETFLNAIDVSEPLGVRDRALFELIYSCGLRIS 164

Query: 208 DSCRAGVQHLQN-NIFSIKTQKTGTIITVELPDGFMKLLA----------MTPIGKETFF 256
           ++    +Q+L       +   K      V   D  ++ L+          +        F
Sbjct: 165 EASGLLLQNLHLKERIVLVRGKGDKERIVPFGDAALRWLSSWLSEYRPQLVGSRQIPYVF 224

Query: 257 INNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTV 316
           +N     ++       F+    ++GV+   H +R   AT     GA    +    G   +
Sbjct: 225 VNYKGMPLSRKGIWKRFQEIEVRSGVSAKVHTLRHSFATHLLAGGADLRSVQELLGHSDL 284

Query: 317 DQAETYTK-GADRIRL 331
              + YT    D +RL
Sbjct: 285 VTTQIYTHIDDDELRL 300


>gi|325201493|gb|ADY96947.1| tyrosine recombinase XerC [Neisseria meningitidis M01-240149]
 gi|325207473|gb|ADZ02925.1| tyrosine recombinase XerC [Neisseria meningitidis NZ-05/33]
          Length = 305

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 36/278 (12%), Positives = 85/278 (30%), Gaps = 24/278 (8%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD-------YRKITTKHIRSGV 123
                  Y ++      + ++  ++    +++                + ++ +   + +
Sbjct: 6   FAAHFDAYLENIVREGKSGHTVAAYRRDLEELFALLAQMPSEDAGGVPQGLSQRDFTAAL 65

Query: 124 ES---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                R     +  + L+S R    W V++  +  +P   ++ PK+     +   +E + 
Sbjct: 66  RRLSQRGLNARTLARKLSSWRQYCAWLVKRGLLHTDPTADIKPPKQPERVPKALPQEWLN 125

Query: 181 QFKSF-----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIIT 234
           +              +    FE +  SGLR S+        +  +   +     G     
Sbjct: 126 RMLDLPVDGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGKGRKQRQ 185

Query: 235 VEL----PDGFMKL--LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK--AGVNKSA 286
           V L     +       L  T    +  F   +  +++  Q        A +   G + S 
Sbjct: 186 VPLVGKSVEALKNYLSLRQTASDGKALFTGRNGTRLSQRQIQKRLAQWAAQNGDGRHVSP 245

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           H +R   A     A      +    G  ++   + YTK
Sbjct: 246 HMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTK 283


>gi|317477593|ref|ZP_07936813.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
 gi|316906241|gb|EFV27975.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
          Length = 348

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 54/318 (16%), Positives = 99/318 (31%), Gaps = 30/318 (9%)

Query: 28  GHGRRIRLPYPHESTFIPAY-------MSALTGSTPKREYINSPRKKPTTLKWLISEYRK 80
           G    +       + F   Y        SA+  + P++E    P             Y +
Sbjct: 23  GGRAYLPAEDFVLAEFFDRYVKMAFIDYSAIKETAPRKEEDKRPPLPEG--------YLE 74

Query: 81  SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG----VESRKHTPSSAIQF 136
                  + ++   + SYF    +         +T   I       +  +  +     Q 
Sbjct: 75  KLQQVRYSDHTVRVYTSYFRDFQQHFEGRKIETVTPGEINDYLLYLIHEKNISSCQQNQR 134

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196
           + +++  ++  + QE      C  V R KR+       +KE++++         +    F
Sbjct: 135 INAIKFYYEKVLGQERR----CYKVNRAKREKTLPDVLSKEEIKKILDVTVTDLRFFCMF 190

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLL---AMTPIG 251
             L  +GLR S+        +  +     ++  K        L    MK L         
Sbjct: 191 SILYSAGLRISELLELKPGDINESRSLIRVRQGKGKKDRYTLLSRPLMKKLTEYNRLYKP 250

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMA 309
           K   F +   +    +  S   KA A +AG+ K    H +R   AT   + G     +  
Sbjct: 251 KVWLFEHRPGEPFTESIVSKRLKAAAREAGITKRIYPHLLRHSFATHLLEQGTDIKIVKE 310

Query: 310 TYGWKTVDQAETYTKGAD 327
             G   +   E Y   AD
Sbjct: 311 LMGHNNIKTTERYVHIAD 328


>gi|310766557|gb|ADP11507.1| site-specific tyrosine recombinase XerC [Erwinia sp. Ejp617]
          Length = 345

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 54/304 (17%), Positives = 106/304 (34%), Gaps = 31/304 (10%)

Query: 64  PRKKPTTLKWLI---SEYRKSAHWGS--LAVNSRISFESYFDQIIRKSGDF-----DYRK 113
           P   P +L  L+    ++R+  +W    L V +   +        R             +
Sbjct: 24  PAHDPKSLYALLLRFVKWRRERNWSETTLKVQTHHGYRFICWASERGIHHAAEVTRPVLE 83

Query: 114 ITTKHIRSGVESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
              +H+    ++     +P +    L  ++V F+W  +Q  +  NP   +E P+++    
Sbjct: 84  SWQRHLWQYRKANGEPLSPRTQRTALQPLQVWFRWLAKQNLILANPAADLELPRQEKHLP 143

Query: 172 RP-WTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGV--QHLQNNIFSI 224
           R   + E ++   +        G + R   E L  +G+R  +  R           I +I
Sbjct: 144 RTILSVEQVEGIVNLCDLNTLQGMRDRALLELLWSTGIRRGEVARLETYSADFSRKILTI 203

Query: 225 KTQKTGTIITVELPDGFMKLLA-----------MTPIGKETFFINNDKQKMNATQFSIWF 273
              K      + + +  +  L            ++P  K  F   +    + A   +   
Sbjct: 204 VQGKGKQDRVIPVGERALWWLRHYLHKVRPEVLVSPDCKALFLAMDGVAGLTANGITHAV 263

Query: 274 KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
                 AG+ K S H  R   AT   + GA    + A  G ++V+  + YT+ + R    
Sbjct: 264 VPYLRAAGIEKGSCHLFRHAMATQMLENGADLRWIQAMLGHRSVESTQIYTQVSIRALQA 323

Query: 333 IKNS 336
           +  S
Sbjct: 324 VHAS 327


>gi|82703659|ref|YP_413225.1| tyrosine recombinase XerC [Nitrosospira multiformis ATCC 25196]
 gi|82411724|gb|ABB75833.1| tyrosine recombinase XerC subunit [Nitrosospira multiformis ATCC
           25196]
          Length = 318

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 43/258 (16%), Positives = 91/258 (35%), Gaps = 19/258 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR---SGVESRKHTPSSAIQFLTSMR 141
             L+  +  S+    D ++  S       +   HIR   + + +   +  S  + L++ R
Sbjct: 39  RRLSPLTCESYGRDLDVLMNLSRGIALEHLQIHHIRRFLAQLHANGFSGRSLARMLSAWR 98

Query: 142 VLFKW-AVRQEYVAINPCLSVERPKRKTEGIRPWTKED---MQQFKSFWSEGSQPRLAFE 197
            L+ + A    Y   NPC  V  PK      R  + ++   + +F +      + +  FE
Sbjct: 99  GLYNYLARHHGYA-CNPCAGVRAPKSPRSLPRTLSPDEALKLLEFDTPDLVALRDKAMFE 157

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII-TVELPDGFMKLLAMTPIGKET-- 254
               SGLR ++      + L      ++    G     V +    M+++      + T  
Sbjct: 158 LCYSSGLRLAELANLKPEDLSLAEGIVRVTGKGNKTRDVPVGSKAMQVVREWIKQRATLA 217

Query: 255 ------FFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHE 306
                  F++   + ++        K +A K G++     H +R   A+    +      
Sbjct: 218 KPGETGLFLSRHGRNISRRSIDQRLKIQAVKQGISGRIHPHVLRHSFASHVLQSSGNLRA 277

Query: 307 LMATYGWKTVDQAETYTK 324
           +    G  ++   + YT 
Sbjct: 278 VQEMLGHASISTTQVYTH 295


>gi|295399802|ref|ZP_06809783.1| tyrosine recombinase XerC [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|312111686|ref|YP_003990002.1| tyrosine recombinase XerC [Geobacillus sp. Y4.1MC1]
 gi|294978205|gb|EFG53802.1| tyrosine recombinase XerC [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|311216787|gb|ADP75391.1| tyrosine recombinase XerC [Geobacillus sp. Y4.1MC1]
          Length = 300

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 49/284 (17%), Positives = 104/284 (36%), Gaps = 28/284 (9%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIR---SGVESR 126
            L  EY +     + +  + + ++   +Q      + G  D  ++T   +R   + +  +
Sbjct: 9   QLFIEYLQIE--KNYSQYTIVCYQRDIEQFFEFMNEQGIHDLAEVTYSDVRLYLTKLYEQ 66

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185
           K +  S  + ++S+R  +K+ +R++ V  NP      PK++ +      +++++      
Sbjct: 67  KQSSRSVSRKISSLRSFYKFLLREKKVLENPFALAALPKKEQKIPNFLYEQELEILFHVN 126

Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVE----- 236
               + G + +   E L  +G+R S+ C   +  +  +  +I    K      V      
Sbjct: 127 DVNTAIGQRNQAMLELLYATGVRVSECCHIQLSDIDFSSSTILIHGKGSKQRYVPFGRFA 186

Query: 237 -------LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAH 287
                  +  G  +LL          F+N     +              KA +  + S H
Sbjct: 187 KEALERYIHHGRRELLQNAKAAHAYLFVNARGNPLTPRGARYILDEMVKKAALTQHVSPH 246

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330
            +R   AT   + GA    +    G   +   + YT    DR+R
Sbjct: 247 VLRHTFATHLLNEGADMRAVQELLGHAHLSSTQVYTHVTKDRLR 290


>gi|254501286|ref|ZP_05113437.1| tyrosine recombinase XerD [Labrenzia alexandrii DFL-11]
 gi|222437357|gb|EEE44036.1| tyrosine recombinase XerD [Labrenzia alexandrii DFL-11]
          Length = 307

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 41/289 (14%), Positives = 90/289 (31%), Gaps = 32/289 (11%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMR 141
              A N+   +    +      G     +  + HI   +          +S  + L++++
Sbjct: 18  RGAAENTLAGYRRDLEDFSDFLGRTKLAEANSDHISGYMSDLTRRGFAETSQARRLSALK 77

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF--------------KSFWS 187
             +K+   +     +P  ++  PK++    +  + +++ +                +   
Sbjct: 78  QFYKFLYSEGSRQDDPTRTLSAPKKRGSLPKVLSMDEVDRLIETARQQTKVSHKSAAAAL 137

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGV-QHLQNNIFSIKTQKTGTIITVELPDGFMKLL- 245
              +     E L  +GLR S+     V   L++        K G    V L       + 
Sbjct: 138 RAQRMYTLIEVLYATGLRVSELVALPVTAALRDARLIEIKGKGGKERLVPLSHAAQSAMK 197

Query: 246 -------AMTPIGKETFFINNDKQ--KMNATQFSIWFKAKATKAGVNKS---AHGVRKFS 293
                  A        +   +      +    F    K  A  AG++ S    H +R   
Sbjct: 198 MYVGLRSAEGAYENSPWLFPSHGGSGHLTRQHFGRDLKDLAIAAGLDASKVSPHVLRHAF 257

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGAD-RIRLGIKNSRRISS 341
           A+     GA    +    G   +   + YT   D R+R  ++ +  ++ 
Sbjct: 258 ASHLLQNGADLRVVQQLLGHADISTTQIYTHVLDERLRELVETAHPLAR 306


>gi|208779508|ref|ZP_03246853.1| phage integrase family protein [Francisella novicida FTG]
 gi|208744469|gb|EDZ90768.1| phage integrase family protein [Francisella novicida FTG]
          Length = 292

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 38/264 (14%), Positives = 94/264 (35%), Gaps = 18/264 (6%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI---RSGVESRKHTPSSAIQFLTSMR 141
            + +  +  +++    Q+ +   D +   +T   I      + ++ ++P +  + L+S+R
Sbjct: 18  KNYSQETINNYQRDLLQLNQALSDKNIISLTHSDILIWIKKLHAQGNSPKTLQRKLSSVR 77

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG---SQPRLAFEF 198
             F + +  E V+ NP   ++ PK      +    +++             ++    F+ 
Sbjct: 78  SFFNFLINSEIVSQNPANGIKAPKDSKRLPKVVNTDELAYLLDVNPSNDIEARDIACFDL 137

Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLLAMTP 249
           L   G+R S+     ++++  +  +I+    G    +          L     K+     
Sbjct: 138 LYSCGIRLSELSSVELKYISISQKNIRVTGKGNKQRIVYFGTKTLSNLNRWL-KIRDSLK 196

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATK-AGVNKSAHGVRKFSATISADAGATAHELM 308
              +  FI+ D + +         +  A K A  +   H +R   A+   D+      + 
Sbjct: 197 PSSDYLFISRDGKHLTNRSIQKRLEIFAQKYASRHIHPHMLRHSFASHVLDSSKDLLAVK 256

Query: 309 ATYGWKTVDQAETYTKGADRIRLG 332
              G   +   + YT   +  +L 
Sbjct: 257 DLLGHADISSTQIYTH-LNFQQLA 279


>gi|189459539|ref|ZP_03008324.1| hypothetical protein BACCOP_00163 [Bacteroides coprocola DSM 17136]
 gi|189465731|ref|ZP_03014516.1| hypothetical protein BACINT_02092 [Bacteroides intestinalis DSM
           17393]
 gi|189433791|gb|EDV02776.1| hypothetical protein BACCOP_00163 [Bacteroides coprocola DSM 17136]
 gi|189433995|gb|EDV02980.1| hypothetical protein BACINT_02092 [Bacteroides intestinalis DSM
           17393]
          Length = 372

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 54/318 (16%), Positives = 99/318 (31%), Gaps = 30/318 (9%)

Query: 28  GHGRRIRLPYPHESTFIPAY-------MSALTGSTPKREYINSPRKKPTTLKWLISEYRK 80
           G    +       + F   Y        SA+  + P++E    P             Y +
Sbjct: 47  GGRAYLPAEDFVLAEFFDRYVKMAFIDYSAIKETAPRKEEDKRPPLPEG--------YLE 98

Query: 81  SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG----VESRKHTPSSAIQF 136
                  + ++   + SYF    +         +T   I       +  +  +     Q 
Sbjct: 99  KLQQVRYSDHTVRVYTSYFRDFQQHFEGRKIETVTPGEINDYLLYLIHEKNISSCQQNQR 158

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196
           + +++  ++  + QE      C  V R KR+       +KE++++         +    F
Sbjct: 159 INAIKFYYEKVLGQERR----CYKVNRAKREKTLPDVLSKEEIKKILDATVTDLRFFCMF 214

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLL---AMTPIG 251
             L  +GLR S+        +  +     ++  K        L    MK L         
Sbjct: 215 SILYSAGLRISELLELKPGDINESRSLIRVRQGKGKKDRYTLLSKPLMKKLTEYNRLYKP 274

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMA 309
           K   F +   +    +  S   KA A +AG+ K    H +R   AT   + G     +  
Sbjct: 275 KVWLFEHRPGEPFTESIVSKRLKAAAREAGITKRIYPHLLRHSFATHLLEQGTDIKIVKE 334

Query: 310 TYGWKTVDQAETYTKGAD 327
             G   +   E Y   AD
Sbjct: 335 LMGHNNIKTTERYVHIAD 352


>gi|302528010|ref|ZP_07280352.1| tyrosine recombinase XerD [Streptomyces sp. AA4]
 gi|302436905|gb|EFL08721.1| tyrosine recombinase XerD [Streptomyces sp. AA4]
          Length = 310

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 49/265 (18%), Positives = 87/265 (32%), Gaps = 29/265 (10%)

Query: 88  AVNSRISFESYFDQI---IRKSGDFDYRKITTKHI--------RSGVESRKHTPSSAIQF 136
           A N+  S+     +    +  +G     ++T  H+            E +    SSA + 
Sbjct: 26  ARNTLDSYSRDLRRYAAHLEAAGVVRLAEVTPAHVTSFGAALREGDEEHQPLAASSAARA 85

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQP 192
           L ++R L K+A        +P   V  P       +     D+ +             + 
Sbjct: 86  LVAVRGLHKFAHADGLTEHDPARDVRPPAAAKRLPKALPVADVLKLLDTPPRDGERALRD 145

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGTIITVELPDGFMKLL------ 245
           R   E L  +G R S++    V  + +     +   K G    V +    ++ L      
Sbjct: 146 RALLELLYSTGARISEAVGLDVDDVDDTERTVLLDGKGGKQRLVPIGRPALEALDAYLVR 205

Query: 246 -----AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISA 298
                A    G    F+N    +++        K  A +AG+    S H +R   AT   
Sbjct: 206 ARPALAANGRGTSAIFLNARGSRLSRQSAWQVLKDTAERAGITAAVSPHTLRHSFATHLL 265

Query: 299 DAGATAHELMATYGWKTVDQAETYT 323
           + GA    +    G  +V   + YT
Sbjct: 266 EGGADVRVVQELLGHASVTTTQVYT 290


>gi|326389407|ref|ZP_08210974.1| integrase family protein [Thermoanaerobacter ethanolicus JW 200]
 gi|325994412|gb|EGD52837.1| integrase family protein [Thermoanaerobacter ethanolicus JW 200]
          Length = 330

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 49/268 (18%), Positives = 93/268 (34%), Gaps = 25/268 (9%)

Query: 99  FDQIIRKSGDFDYRKITTKHIRSGV-------ESRKHTPSSAIQFLTSMRVLFKWAVRQ- 150
           FD+I     D D   I +  +             R +TP +  + + S+R  + +  ++ 
Sbjct: 66  FDEI--DISDVDVDLIESVDLNDLYAYLNFVANERSNTPPARARKVASLRSFYNYLYKKA 123

Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR--LAFEFLLYSGLRCSD 208
           + ++ NP   +E PK         T ++ ++  +      + R        L  GLR S+
Sbjct: 124 KVLSKNPTQELESPKLSVRQPIYLTLDESKKLLNSIDGPFKERDYAIITLFLNCGLRVSE 183

Query: 209 SCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM--------TPIGKETFFINND 260
                +  ++++  ++   K     TV L D  +  +              K+  F++  
Sbjct: 184 LVNINLDDIKDDKLTVI-GKGNKQRTVYLNDACIDAINTYLEVRPKEGVKDKKALFLSKR 242

Query: 261 KQKMNATQFSIWFKAKATKA---GVNKSAHGVRKFSATISADAG-ATAHELMATYGWKTV 316
            ++++        K     A   G   SAH +R  +AT+    G      L    G   V
Sbjct: 243 LKRISVKTVQYTVKKHLKNANLEGKKYSAHKLRHTAATLMYRYGNVDIRTLQKLLGHSNV 302

Query: 317 DQAETYTKGADRIRLGIKNSRRISSVVD 344
              + YT   D       N   +S   D
Sbjct: 303 STTQIYTHVDDSQLKEAVNKNPLSQKED 330


>gi|312134835|ref|YP_004002173.1| integrase family protein [Caldicellulosiruptor owensensis OL]
 gi|311774886|gb|ADQ04373.1| integrase family protein [Caldicellulosiruptor owensensis OL]
          Length = 376

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 57/330 (17%), Positives = 115/330 (34%), Gaps = 43/330 (13%)

Query: 49  SALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSG 107
            AL     + E       K  T+   I+E+ +  H   L   ++ S++      ++    
Sbjct: 43  KALAELVNQIEKQEFVEDKNVTIGEFINEWFE-IHCKKLTPKTQESYQKMLRFYVLPYLN 101

Query: 108 DFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP 164
           D +   +    I     + K      ++       +R ++ +AV+ +YV  NP  +VE P
Sbjct: 102 DIELATLKPLTIAKFYNTLKEQGISNTTLNYVHRLLREIYNFAVKWQYVTKNPFDNVETP 161

Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ------ 218
           K+  + ++ W  +++++ +  + + +         LY+G+R  + C      +       
Sbjct: 162 KKDRKEMQVWNLDEIRKAEEVFRD-TPIFAHVMLALYTGMRLGEVCGLKWDDIDFKNKVC 220

Query: 219 ---------NNIFSIKTQ-KTGTIITV-ELPDGFMKLLAMTPIG------------KETF 255
                    N    IK + KT   + +  L D  +++L                    T+
Sbjct: 221 AVRRVAEYINGEVVIKEKPKTDKSLRIVALTDNLVEILKEEKKRQLENKLKFGQNYDTTY 280

Query: 256 --FIN--NDKQKMNATQFSIWFKAKATKAG-VNK-SAHGVRKFSATISADAGATAHELMA 309
             FI+   D +       S  F    +K   + K   H +R   AT+   AG     +  
Sbjct: 281 DGFISVWEDGRFKVPDYVSKKFSKILSKQNEIKKIRFHDLRHTHATLLLQAGVNMKVISD 340

Query: 310 TYGWKTVDQA-ETYTK-GADRIRLGIKNSR 337
             G   +    + Y+    D  R  I+   
Sbjct: 341 RLGHSQISITMDLYSHVNLDMQREAIEKLE 370


>gi|312872353|ref|ZP_07732423.1| putative tyrosine recombinase XerC [Lactobacillus iners LEAF
           2062A-h1]
 gi|312873924|ref|ZP_07733960.1| putative tyrosine recombinase XerC [Lactobacillus iners LEAF
           2052A-d]
 gi|329921329|ref|ZP_08277767.1| putative tyrosine recombinase XerC [Lactobacillus iners SPIN 1401G]
 gi|311090473|gb|EFQ48881.1| putative tyrosine recombinase XerC [Lactobacillus iners LEAF
           2052A-d]
 gi|311092176|gb|EFQ50550.1| putative tyrosine recombinase XerC [Lactobacillus iners LEAF
           2062A-h1]
 gi|328934621|gb|EGG31125.1| putative tyrosine recombinase XerC [Lactobacillus iners SPIN 1401G]
          Length = 307

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 35/279 (12%), Positives = 96/279 (34%), Gaps = 26/279 (9%)

Query: 72  KWLISEYRKS-AHWGSLAVNSRISFESYFDQ----IIRKSGDFDYRKITTKHIR---SGV 123
              +  Y     +  + ++N+  ++     +     +   G  D+ K++++ I      +
Sbjct: 5   DDFLKLYYNYLKNERNYSINTCKAYMDDLSEARTFFVENGGFIDWLKLSSRDIEIFIQYL 64

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
             +K+  S+  + ++++R  +++  ++  + +NP   +               ++M +  
Sbjct: 65  AQKKYKRSTQSRKISTLRSFYRFLNKRNIIPVNPVELISLRGDHKNLPEFLYSDEMVKVL 124

Query: 184 S----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKT-------G 230
                    G +     E    +G+R S+     +  +    N+  +  +         G
Sbjct: 125 KSISTTTPLGLRNMALLELFYATGMRVSEIANLKLDQVDFELNLILVHGKGNKDRYVAFG 184

Query: 231 TIITVELPDGFMKLLAMT---PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS-- 285
                 L +  ++               F+N++   + +       K     AG++ S  
Sbjct: 185 EEAKTALNNYLVEARKKLLLHKTDYGYVFLNSNGNMITSRGLEYIIKNIFLNAGISASVH 244

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            H +R   AT   + GA    +    G +++   + YT 
Sbjct: 245 PHMLRHTFATQMLNNGADLRTVQELLGHESISTTQIYTH 283


>gi|297584028|ref|YP_003699808.1| tyrosine recombinase XerC [Bacillus selenitireducens MLS10]
 gi|297142485|gb|ADH99242.1| tyrosine recombinase XerC [Bacillus selenitireducens MLS10]
          Length = 303

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 39/268 (14%), Positives = 88/268 (32%), Gaps = 22/268 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDF----DYRKITTKHIRSGVESRKHTPSSAIQFLTSM 140
              + ++   ++       +         D      +   + ++   +   +  + L S+
Sbjct: 24  KGASPSTISQYQKDICAFFQNMDHTKPVEDVNHQDIRRYLALLQKDGYARRTVARKLASL 83

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLAF 196
           R L+++  R+  + +NP L V  PK   +      + +MQ            G++     
Sbjct: 84  RSLWRFLEREGRIQLNPFLYVTTPKLDKKLPSFLYENEMQAIFDAIDTDSLLGARNLAII 143

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLA--------- 246
           E L  SG+R S+     ++ +  ++ ++    K      + +    ++ L+         
Sbjct: 144 ELLYASGIRASECTGLKLKDIDLDLSTLLVMGKGKKERFLPVGSFAVEALSLYLDKRTAK 203

Query: 247 -MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGAT 303
                  +  FIN     +               A +    + H +R   AT   + GA 
Sbjct: 204 FGPHAQSDPLFINYRGGALTDRGLRKILAKVIEDASLTSKLTPHVIRHTFATHMLNEGAD 263

Query: 304 AHELMATYGWKTVDQAETYTK-GADRIR 330
              +    G   +   + YT    DR+R
Sbjct: 264 LRTVQELLGHTDLKATQIYTHVTRDRLR 291


>gi|225864449|ref|YP_002749827.1| DNA integration/recombination/invertion protein [Bacillus cereus
           03BB102]
 gi|225788669|gb|ACO28886.1| site-specific recombinase, phage integrase family [Bacillus cereus
           03BB102]
          Length = 292

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 45/288 (15%), Positives = 97/288 (33%), Gaps = 37/288 (12%)

Query: 90  NSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL---FK 145
           ++ + + ++ +  II   G     K+   HI+   ++      +    L   R+L     
Sbjct: 6   STFVGYRAFINQHIIPSIGMVALHKLNVMHIQKCYKTAIDRGIANNSVLLMHRILKSALN 65

Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLR 205
            AV+Q  ++ NP    E PK++   I+ WT+E++++F    S+ S+  + +   + +G+R
Sbjct: 66  LAVKQNIISRNPADFAEIPKKERTSIQTWTEEEVKKFL-LHSQESRYHIGYLLAITTGMR 124

Query: 206 CSDSCRAGVQHLQ--------------NNIFSIKTQKTGTIITVELPDGFMKLLAMTPI- 250
             +      Q +               +N      +   +  T+ +P   ++ L    + 
Sbjct: 125 MGEVLGLRWQDVDFEKHTVTINQTSGHDNKIKKTAKTNSSKRTIPVPKETIESLKKHKVL 184

Query: 251 -------------GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATI 296
                          +    N     +    F   F      AGV +   H +R   ATI
Sbjct: 185 INQEKLRLGSAYQDFDLINCNEFGMIIKKANFRNNFIRAIHNAGVKEIKFHDLRHTHATI 244

Query: 297 SADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVV 343
               G     +    G   +      Y+       +  +  +     +
Sbjct: 245 LLKQGVNPKIISERLGHTDISMTLSVYSHVL--PNMQEEAVKNFGKSI 290


>gi|302036632|ref|YP_003796954.1| putative integrase [Candidatus Nitrospira defluvii]
 gi|300604696|emb|CBK41028.1| putative Integrase [Candidatus Nitrospira defluvii]
          Length = 356

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 56/311 (18%), Positives = 110/311 (35%), Gaps = 23/311 (7%)

Query: 29  HGRRIR-LPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87
            GR++R      +     A +S +     + +Y + P+++  T + L+  Y +       
Sbjct: 17  EGRQVRRSTETSDKKLAEAILSKVKVQIVEGKYFDKPKEEARTFRELMDRYLREHA---- 72

Query: 88  AVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMR 141
             + R  +  Y +    +    G+     +T K I +    R     TP++  + L  M+
Sbjct: 73  --SRRSGYRRYVNMVTNLTAHFGNPKLEHVTPKTIVAYKNKRYADGVTPATINRELALMK 130

Query: 142 VLFKWA-VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200
             F  A    E+   NP   V   +      R  T E+ ++  +  +   Q  + F    
Sbjct: 131 KAFNLACREWEWTKDNPVCRVSMERENNTRDRWLTCEEERRLLAASAPWLQEVIVFAI-- 188

Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKT--QKTGTIITVELPDGFMKLLAMTPIGKET---- 254
           ++GLRC +        +  N  +      K G   T+ L    ++ L     G+      
Sbjct: 189 HTGLRCGEILNLTWAGVDLNRRTATVFKSKNGERRTIPLSHTLVQALQNKARGRRMDSEL 248

Query: 255 FFINNDKQKMNATQFSIWFKAKATKAG-VNKSAHGVRKFSATISADAGATAHELMATYGW 313
            F +     ++A      F+        ++   H +R  SAT    AG   +++    G 
Sbjct: 249 VFTSAAHTPLDAPNLRRSFRLALKHGQVLDFRFHDLRHTSATRMVQAGVDLYKVQRILGH 308

Query: 314 KTVDQAETYTK 324
           K+    + Y  
Sbjct: 309 KSPMMTQRYAH 319


>gi|312892234|ref|ZP_07751731.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
 gi|311295364|gb|EFQ72536.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
          Length = 322

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 39/245 (15%), Positives = 81/245 (33%), Gaps = 21/245 (8%)

Query: 105 KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP 164
              D  Y+ I    ++   + +     S  + ++ +R  FK+A+R+  +  NP   ++ P
Sbjct: 70  HIADITYQDIREWIVQLMNDDQAAK--SINRKISCLRTFFKFALREGIITANPASKIQAP 127

Query: 165 KRKTEGIRPWTKEDMQQFKSFWSE------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218
           K          ++ +    S          G + +L  E L  +G+R ++        + 
Sbjct: 128 KIPKRLPVVVEEDKIVSLLSSSQIFDDSFTGLRDKLVIELLFGTGIRLAELVGLKETDID 187

Query: 219 NNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGK---------ETFFINNDKQKMNATQ 268
               +IK   K      + +      LL      K          T  + +      +  
Sbjct: 188 IYEGTIKVLGKRNKERVIPIHSELKLLLVHYINIKKSENFNNNSLTLIVTSKGANAYSKM 247

Query: 269 FSIWFKAKA--TKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-G 325
             +  +           KS H +R   AT   + GA  + +    G   +   + YT   
Sbjct: 248 VYLIVQKYLSLISTQDKKSPHVLRHSFATSLLNHGADLNAIKELLGHANLSATQIYTHNS 307

Query: 326 ADRIR 330
            +R++
Sbjct: 308 VERLK 312


>gi|304388409|ref|ZP_07370516.1| tyrosine recombinase XerC [Neisseria meningitidis ATCC 13091]
 gi|304337590|gb|EFM03752.1| tyrosine recombinase XerC [Neisseria meningitidis ATCC 13091]
          Length = 305

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 36/278 (12%), Positives = 85/278 (30%), Gaps = 24/278 (8%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD-------YRKITTKHIRSGV 123
                  Y ++      + ++  ++    +++                + ++ +   + +
Sbjct: 6   FAAHFDAYLENIVREGKSGHTVAAYRRDLEELFALLAQMPSEDAGGVPQGLSQRDFTAAL 65

Query: 124 ES---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                R     +  + L+S R    W V++  +  +P   ++ PK+     +   +E + 
Sbjct: 66  RRLSQRGLNARTLARKLSSWRQYCAWLVKRGLLHTDPTADIKPPKQPERVPKALPQEWLN 125

Query: 181 QFKSF-----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIIT 234
           +              +    FE +  SGLR S+        +  +   +     G     
Sbjct: 126 RMLDLPVDGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGKGRKQRQ 185

Query: 235 VEL----PDGFMKL--LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK--AGVNKSA 286
           V L     +       L  T    +  F   +  +++  Q        A +   G + S 
Sbjct: 186 VPLVGKSVEALKNYLPLRQTASDGKALFTGRNGTRLSQRQIQKRLAQWAAQNGDGRHVSP 245

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           H +R   A     A      +    G  ++   + YTK
Sbjct: 246 HMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTK 283


>gi|255020750|ref|ZP_05292809.1| Site-specific recombinase XerD [Acidithiobacillus caldus ATCC
           51756]
 gi|254969812|gb|EET27315.1| Site-specific recombinase XerD [Acidithiobacillus caldus ATCC
           51756]
          Length = 308

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 49/269 (18%), Positives = 88/269 (32%), Gaps = 23/269 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
           G+LA NS  ++      +            D          +          S  + L+S
Sbjct: 30  GNLAANSLEAYSRDLRLLATYLAASQRRLRDADAADLSLFLAQRLQGGAALRSVARQLSS 89

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLA 195
           +R  + +A R+ +   +P  S++            ++ ++    +        G +    
Sbjct: 90  LRRFYAFAQREGWRGDDPSASLQHLHIGRHLPAVPSEGEVDALLAAPDRRTVLGLRDAAM 149

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGFMKLLAM------- 247
            E L  +GLR S+        L      +    K      + + +  ++ L         
Sbjct: 150 LETLYATGLRVSELVGLLCSQLDLEAGVVLTLGKGSKERLIPVGEVALETLHRYLREARG 209

Query: 248 ---TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302
                      F+    + M+  +F    KA ATKAG+    S H +R   AT   D GA
Sbjct: 210 ALLGHKQSPALFLTVRGEAMSRQRFWQTIKAHATKAGIRSAFSPHSLRHAFATHLLDHGA 269

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRL 331
               +    G   ++  E YT  A + RL
Sbjct: 270 DLRSVQLMLGHAQLNTTEIYTHIA-QARL 297


>gi|329113620|ref|ZP_08242399.1| Shufflon-specific DNA recombinase [Acetobacter pomorum DM001]
 gi|326697066|gb|EGE48728.1| Shufflon-specific DNA recombinase [Acetobacter pomorum DM001]
          Length = 424

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 55/320 (17%), Positives = 112/320 (35%), Gaps = 18/320 (5%)

Query: 21  IIYYFRKGHGRRIRL--PYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT---LKWLI 75
           +++Y   G  RR  +    P  +         +          N+ R +  T   +    
Sbjct: 74  VVHYRANGRFRRYTIGHHGPWTADKARDEAIKILARVKDGNDPNTERGEERTSPTVSQFC 133

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQII-RKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
             + +      L   ++  ++   D  I +K G      +T   + +   + +H P  A 
Sbjct: 134 KIFIERHVKTHLKSTTQAEYQRAIDLFITKKIGSRKMAAVTHSDVVTFHHTYRHIPYQAN 193

Query: 135 QFLTSMRVLFKWAVRQEYVAIN--PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG--- 189
           + L  +  +F  A+       N  PC  V+R K +    R    E+ Q+      +    
Sbjct: 194 RTLGVLSKMFSLAILWGVRTDNVNPCRGVKRYKEQKRE-RYLAAEEHQRLGKALDDARST 252

Query: 190 -SQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKLLA 246
             +   AF+ LL +G R  +  R   +++     +  +   K G   TV+L +  + LL 
Sbjct: 253 MPEAVNAFQLLLLTGCRLREIQRLKWEYVFLDEGVIRLPDSKNGAR-TVQLGESAIGLLG 311

Query: 247 MTP-IGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATA 304
             P +    + I   K   + T     ++    +AG+ +   H +R   A+ + + G   
Sbjct: 312 DIPRVEGNPYVITGRKDGGHLTDLEKPWRRIRKEAGLEDVRIHDLRHSFASDALELGEDL 371

Query: 305 HELMATYGWKTVDQAETYTK 324
             +    G + +     Y  
Sbjct: 372 IMIGKLLGHRDLKSTARYAH 391


>gi|134299970|ref|YP_001113466.1| phage integrase family protein [Desulfotomaculum reducens MI-1]
 gi|134052670|gb|ABO50641.1| phage integrase family protein [Desulfotomaculum reducens MI-1]
          Length = 301

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 40/271 (14%), Positives = 88/271 (32%), Gaps = 29/271 (10%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVE------SRKHT 129
           Y++S    +L+  +   ++    + I      D     + T   R  V         ++ 
Sbjct: 13  YQES---RNLSPRTLEWYKYITAKFINYCNDNDIQIDSLKTPEARQWVNWLQKGSETQYK 69

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            +S    + +++ +F + +  EY+  NP   V + K     I  +  +++++  +  ++ 
Sbjct: 70  GNSINCHIRAIKTMFNYFMEDEYIDKNPFHKVSKIKVDNTIIHTFEPDEIKKMLAQLNKN 129

Query: 190 S----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE----LPDG 240
           +    +  L    +   GLR S+     +  +  +    K   K      V     +   
Sbjct: 130 TFYDLRDNLMLRIMYDCGLRVSEIINLKITDIDTDKNMFKVFGKGHKERMVPFGRSVKRE 189

Query: 241 FMKLL----AMTP--IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRK 291
            +K L       P  + +      N    ++        +     AG+     S H  R 
Sbjct: 190 LVKYLPKRNKAVPHDLDEGYLLCTNQGTPLHKRNILRKIRIVGQGAGIEGKRLSPHTYRH 249

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETY 322
             A     AG     L    G  +++    Y
Sbjct: 250 SFAKQYLMAGGDLFSLQTIMGHSSLNSTRRY 280


>gi|291550597|emb|CBL26859.1| Site-specific recombinase XerD [Ruminococcus torques L2-14]
          Length = 306

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 39/281 (13%), Positives = 89/281 (31%), Gaps = 26/281 (9%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           + +Y +   +   L  N+  ++     Q    + +    K   +   + +  +K    + 
Sbjct: 7   VEKYLEYCEFRKELDWNTLKAYRIDLRQFFEYTMEDIPGKEKIEDYITELH-KKFKQKTI 65

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVER-PKRKTEGIRPWTKEDMQQFK--------- 183
            + + S++  + +   +E ++ NP   ++   K      R   +E++++           
Sbjct: 66  KRKIASVKAYYNFLEEREIISDNPFRKIKVGFKESIILPRIIPREEIEELLNFMYAQENK 125

Query: 184 ---SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITV---- 235
                     +     E L  +G R  +        +  N   I+   K G    +    
Sbjct: 126 SNVKVHKFWLRDIAVIETLFATGARVYEISNIREDSVNLNTGLIRLMGKGGKERYIQIAS 185

Query: 236 -ELPDGFMKLL---AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289
            E+ D         A        FF+NN   +       +  K     AG+ +  + H  
Sbjct: 186 SEILDLLKNYYKENAKEIKQSGFFFVNNRGCRYTEQSIRLMLKKYTKLAGIERNITPHMF 245

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
           R   AT   + G     +    G  ++   + Y   A + +
Sbjct: 246 RHSFATYLIEEGVDISCVQQILGHSSIKTTQIYIHVAAKKQ 286


>gi|327399621|ref|YP_004340490.1| Tyrosine recombinase xerC [Hippea maritima DSM 10411]
 gi|327182250|gb|AEA34431.1| Tyrosine recombinase xerC [Hippea maritima DSM 10411]
          Length = 276

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 49/278 (17%), Positives = 105/278 (37%), Gaps = 21/278 (7%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQ 135
            EY  S      + N+  ++ +   + ++ +  FD   +        +  R  + S+  +
Sbjct: 9   EEYLNS---KYSSKNTIKAYLTDTQEFLKNTKGFDRDDVEV--FLVKLFDRGLSSSTITR 63

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195
            L S+ + F++   +  V INP   +++PK+K    +    +D+        +  + R  
Sbjct: 64  KLASLSIFFEFLKLKGKVRINPLRVIDKPKQKKMLPKFLEVDDVVALLEGIKD-KRDRAL 122

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLA--MTPIGK 252
           FE +  S LR S++    +  +      I+  +K G ++ V +       L   +    +
Sbjct: 123 FELIYSSSLRASEALGLDINDIDFENLRIRIRRKGGKVVYVPISQRAALFLKDYLKDRKE 182

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMAT 310
              F+N   ++++        K  A    +  + S H +R   AT   ++G     L   
Sbjct: 183 GPLFLNRYGKRLSDRYLRRLIKKYALS-SIFKDVSPHTLRHSKATHLLNSGMDIRLLQRL 241

Query: 311 YGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
            G  ++   + YT           N + ++   DS  P
Sbjct: 242 LGHSSIKATQIYTH---------LNLKELAQTYDSTHP 270


>gi|238026040|ref|YP_002910271.1| phage integrase:phage integrase, N-terminal SAM-like protein
           [Burkholderia glumae BGR1]
 gi|237875234|gb|ACR27567.1| Phage integrase:Phage integrase, N-terminal SAM-like protein
           [Burkholderia glumae BGR1]
          Length = 342

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 58/348 (16%), Positives = 113/348 (32%), Gaps = 37/348 (10%)

Query: 1   MTPSLRLPPFVTKERTRH---GKIIYYFRKG--HGRRIRLPYPHESTFIPAYMSALTGST 55
           M    + P  + + R+R    G + YY+  G   GRRI  P   +        + L G+ 
Sbjct: 1   MAGKAQTPGAIPRFRSRKNADGSLRYYYDHGEVDGRRILEPLGTDRVVALQRWAELEGAR 60

Query: 56  PKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT 115
                  S      T   L   YR        +  ++  ++ +  ++    GD +   +T
Sbjct: 61  A-----PSSETTRHTFAMLEQAYRI-RELPQKSAATQRMYDLFLSRLAGVIGDRELDTLT 114

Query: 116 TKHIRSGVESRKHTPS--SAIQFLTSMRVLFKWAVRQEYVA-INPCLSVERPKRKTEGIR 172
              + +   +        +A +    + ++         +   NPC  V R K++T    
Sbjct: 115 PADVATIWRATAEKRGVVTANRTKAVLSLVLNCGRLWGMMTIANPCAGV-RGKKETGRQA 173

Query: 173 PWTKEDMQQFKSFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
               +++  + + ++   QP R A +       R SD  R    ++       +TQKTG 
Sbjct: 174 ILIDDEL--YAAVYTVADQPLRNAMDLADLCAQRPSDVLRVQRSNIVRGNLIFRTQKTGA 231

Query: 232 IITVELPDGFMKLLAMTPI-------GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284
            +TV++      L+                   + +   +   +    F     +AG++K
Sbjct: 232 FVTVQITGDLAALIERLLAWRGSKVDVSPYLLRDEEGYPLTKGKLRSRFDKARERAGIDK 291

Query: 285 SAHGVRKFSATISADAGATAHEL-------MATYGWKTVDQAETYTKG 325
           +     KF        G T   +           G         Y +G
Sbjct: 292 A-----KFQFRDLRARGVTHKTIDEGLEAGQRLAGHSGPGMTARYVRG 334


>gi|239828168|ref|YP_002950792.1| integrase [Geobacillus sp. WCH70]
 gi|239808461|gb|ACS25526.1| integrase family protein [Geobacillus sp. WCH70]
          Length = 329

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 46/275 (16%), Positives = 101/275 (36%), Gaps = 22/275 (8%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFE---SYFDQIIRKSG------DFDYRKITTKHIRS 121
            +  + ++ +     +    +   +    S F +I+R+ G            I    I  
Sbjct: 28  FQIALEKFLEDCEIRNCRPQTIQYYRNELSVFYKILREQGIEVNIYRMTPEIIKQNVILY 87

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI--NPCLSVERPKRKTEGIRPWTKEDM 179
               +     +    L ++R  F +  R++ ++   NP   ++  K + + +  +TKE++
Sbjct: 88  MKNQKNCKTVTINTRLRALRAFFNFLEREKIISKKQNPFHEIKLLKDRKKAVPTFTKEEI 147

Query: 180 QQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTII 233
                  +     G +       LL +G+R S+     +  +    +   I+  K     
Sbjct: 148 HILFKQPNLRTFTGVRDLTIMMLLLETGIRASECVGIRLGDIDFQRSRILIQNTKGYRQR 207

Query: 234 TVEL----PDGFMKLLAMTPI-GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHG 288
            V +     +   K LA+      +  F++ D   +   Q     ++   K G++ + H 
Sbjct: 208 YVPIQKQMKEQLKKYLAIRGTLDHDYLFVSVDDTPLTKRQMQAQIESYGKKCGIHATCHK 267

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
            R   A +S +AGA   EL A  G  +++  + Y 
Sbjct: 268 FRHTFARLSVEAGAGIFELQAVLGHSSMEMVKHYV 302


>gi|37528455|ref|NP_931800.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|36787893|emb|CAE17010.1| integrase/recombinase [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 303

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 43/270 (15%), Positives = 94/270 (34%), Gaps = 20/270 (7%)

Query: 75  ISEYRKSAH-WGSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSGV-ESRKHT 129
           I  + +       L+  +   +  +   +     + G   ++ +    +R  V  SR+  
Sbjct: 12  IEAFLRYLRVERRLSPVTITHYRRHLATLAEMVLEMGVSQWQDLDPAKVRMLVTRSRRAG 71

Query: 130 PSSAIQ--FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-- 185
             SA     L+S+R    W V Q  +++NP  +V  P  K    +    +++ Q  +   
Sbjct: 72  LQSANLALRLSSLRSFLDWQVIQGEISVNPSKTVSTPGTKRHLPKNIDVDEVNQLLNINF 131

Query: 186 -WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI--------ITVE 236
                 + R   E +  +GLR S+      QHL      +     G+           VE
Sbjct: 132 NDPLSVRDRTMLEVMYGAGLRLSELVGLDCQHLDLESGEVWVSGKGSKERKVPLGHTAVE 191

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294
             + ++ +  +        F++   ++++       F     + G+  +   H +R   A
Sbjct: 192 WLNRWLAMRELFEPEDNAVFVSKRGRRISTRNVQKRFAQWGIRQGMSSHIHPHKLRHSFA 251

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324
           T   ++      +    G  ++   + YT 
Sbjct: 252 THILESSGDLRAVQELLGHASLSSTQIYTH 281


>gi|50123101|ref|YP_052268.1| site-specific tyrosine recombinase XerC [Pectobacterium
           atrosepticum SCRI1043]
 gi|49613627|emb|CAG77078.1| integrase/recombinase [Pectobacterium atrosepticum SCRI1043]
          Length = 311

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 43/259 (16%), Positives = 86/259 (33%), Gaps = 19/259 (7%)

Query: 85  GSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLT 138
             L+  +  S+         I+  +G  D+R +    +RS V           S    L+
Sbjct: 31  RQLSPLTLTSYSRQLSAVITILSAAGIADWRALDASSVRSVVSRSKRDGLHSGSLALRLS 90

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLA 195
           ++R    W V +  +  NP   V  P+      +    +++ +            + R  
Sbjct: 91  ALRSFLDWMVSRGVLTANPAKGVSTPRAGRPLPKNMDVDEVNRLLEIDLDDPLAVRDRTM 150

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI--------ITVELPDGFMKLLAM 247
            E +  +GLR ++      QH+      I     G+           V   + ++ L  +
Sbjct: 151 LEVMYGAGLRLAELVGMDYQHIDLASGEIWVMGKGSKERKLPIGKTAVTWLERWLALREL 210

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAH 305
                +  FI+N  ++++       F     K G+N     H +R   AT   ++     
Sbjct: 211 FGPQDDAVFISNQGRRISMRNVQKRFAEWGVKQGINSHVHPHKLRHSFATHMLESSGDLR 270

Query: 306 ELMATYGWKTVDQAETYTK 324
            +    G   +   + YT 
Sbjct: 271 AVQELLGHANLTTTQIYTH 289


>gi|14520598|ref|NP_126073.1| integrase/recombinase xerd [Pyrococcus abyssi GE5]
 gi|73920473|sp|Q9V1P5|XERCL_PYRAB RecName: Full=Probable tyrosine recombinase xerC-like
 gi|5457814|emb|CAB49304.1| xerC/D integrase/recombinase protein [Pyrococcus abyssi GE5]
          Length = 286

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 46/281 (16%), Positives = 106/281 (37%), Gaps = 20/281 (7%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
           I E+         + N+   +  Y  +   + G     +       + ++ + ++  S  
Sbjct: 13  IEEFATYLELEGKSRNTVRMYTYYISKFFEE-GHSPTAR-DALRFLAKLKRKGYSTRSLN 70

Query: 135 QFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
             + +++  FK+  +  E         ++ PK      +  T+E++++  +  +E  + R
Sbjct: 71  LVIQALKAYFKFEGLDSE------AEKLKTPKMPKTLPKSLTEEEVRRIIN-AAETLRDR 123

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGF----MKLLAM 247
           L    L  +GLR S+ C   V+ +  +  +  ++  K G    V + +       + L  
Sbjct: 124 LILLLLYGAGLRVSELCNLRVEDVNFEYGVIVVRGGKGGKDRVVPISESLLSEIKRYLES 183

Query: 248 TPIGKETFFI---NNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATA 304
                   F+      K K++        K    KAGV  + H +R   AT   + G   
Sbjct: 184 RNDDSPYLFVEMKRKRKDKLSPKTVWRLVKKYGRKAGVELTPHQLRHSFATHMLERGIDI 243

Query: 305 HELMATYGWKTVDQAETYTKGADR-IRLGIKNSRRISSVVD 344
             +    G   +   + YTK + + ++  +K ++ + S++ 
Sbjct: 244 RIIQELLGHSNLSTTQIYTKVSTKHLKEAVKKAKLVESIIG 284


>gi|254478357|ref|ZP_05091736.1| site-specific recombinase, phage integrase family
           [Carboxydibrachium pacificum DSM 12653]
 gi|214035715|gb|EEB76410.1| site-specific recombinase, phage integrase family
           [Carboxydibrachium pacificum DSM 12653]
          Length = 306

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 46/284 (16%), Positives = 92/284 (32%), Gaps = 33/284 (11%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYF----DQIIRKSGDFDYRKITTKHIRSGVE-- 124
           LK+ I E+ +   + +L   +   +E       D II++    +   +   HI++ +   
Sbjct: 3   LKFAIQEFLEDRKFKNLTEITVKGYERSLKAFHDYIIQQHQILNIEDVRPYHIKAYLSYR 62

Query: 125 --SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
               K+   +    + +++  F + V++  +  NP   V   K  T+ I  +T   ++Q 
Sbjct: 63  KKELKNNAETINHEIRNLKAFFNYFVKERVINENPVT-VPVQKTDTK-IETFTDYHIRQM 120

Query: 183 KSFWSE---------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI- 232
             ++ +           +  +    LL +G+R  + C    + +      +     G   
Sbjct: 121 LRYYRKQKQRGDNFYAYRGYIMILILLGTGIRLGEMCNLRWKDIDFVNAKMTVIGKGRRQ 180

Query: 233 ITVELPDGFMKLLAMTP----------IGKETFFINNDKQKM---NATQFSIWFKAKATK 279
            T+ L D   K L                          ++M   +   F    K     
Sbjct: 181 RTIPLTDNLKKELMEWRFYVEKKLGNVTEDSFVIPTQTGKRMNENSVKTFFQRLKKIMNF 240

Query: 280 AGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
             V  S H  R   A     +G     L    G  T++    Y 
Sbjct: 241 RDVRLSPHTFRHTFAKQWILSGGDVFSLQRILGHSTIEVTNKYV 284


>gi|323705364|ref|ZP_08116939.1| integrase family protein [Thermoanaerobacterium xylanolyticum
           LX-11]
 gi|323535266|gb|EGB25042.1| integrase family protein [Thermoanaerobacterium xylanolyticum
           LX-11]
          Length = 327

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 57/304 (18%), Positives = 109/304 (35%), Gaps = 28/304 (9%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV-- 123
           + P T+K  + +      +  +  N      S FD I     D D   I +  +      
Sbjct: 28  RSPNTVKAYLYDLILFFRFIKVRKNLCSD--SDFDNI--DISDVDISLIESIDLNDLYAF 83

Query: 124 -----ESRKHTPSSAIQFLTSMRVLFKWAV-RQEYVAINPCLSVERPKRKTEGIRPWTKE 177
                  R +TP +  + + S+R  + +   +++ +  NP L +E PK         T +
Sbjct: 84  LSFVTHERSNTPPARARKVASLRSFYNYLYAKRKVITKNPALELESPKLGIRQPVYLTLD 143

Query: 178 DMQQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
           +  +  +      + R        L  GLR S+     +  ++++  ++   K     TV
Sbjct: 144 ESVKLLNSIDGEFKERDYAIITLFLNCGLRLSELANINITDIKDDKLTVI-GKGNKQRTV 202

Query: 236 ELPDGFM----KLLAMTP----IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--- 284
            L D  +      L + P      K+  F++   Q+++        K     A ++    
Sbjct: 203 YLNDACINAINDYLKVRPHDGVKDKKALFLSKRLQRISIKTIQYIVKKHLKDANLDGKKY 262

Query: 285 SAHGVRKFSATISADAGA-TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343
           S H +R  +AT+    G      L    G   V   + YT   D  +L    S+   S +
Sbjct: 263 STHKLRHTAATLMYRYGKVDIRTLQRLLGHSNVSTTQIYTH-VDDSQLRDAVSKNPLSEL 321

Query: 344 DSDD 347
           + D+
Sbjct: 322 NIDN 325


>gi|157692293|ref|YP_001486755.1| site-specific tyrosine recombinase XerC [Bacillus pumilus SAFR-032]
 gi|172046054|sp|A8FD78|XERC_BACP2 RecName: Full=Tyrosine recombinase xerC
 gi|157681051|gb|ABV62195.1| tyrosine recombinase [Bacillus pumilus SAFR-032]
          Length = 305

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 45/277 (16%), Positives = 94/277 (33%), Gaps = 28/277 (10%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV------ESRK 127
           L  EY +     + +  +   +    ++ +R               +           + 
Sbjct: 10  LFIEYLQIE--KNYSALTISGYTEAIEEFVRFMNVQGIDGFEEVSYQDTRIYLTEAYEKG 67

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-- 185
            T  +  + ++++R  +K+ +R++ V  NP L V  PK+         +E++++  +   
Sbjct: 68  LTRRTISKKVSALRSFYKFLLREQLVKENPFLLVSLPKQDKRIPSFLYEEELKELFTVSD 127

Query: 186 --WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE------ 236
                G + +   E L  +G+R S+ C      L  ++ ++    K      V       
Sbjct: 128 VSTPLGQRNQAILELLYATGMRVSELCSLKESDLDLSMDTVLVHGKGSKQRYVPFGSYAH 187

Query: 237 ------LPDGFMKLLAMTPIGKETF-FINNDKQKMNATQFSIWFKAKATKAG--VNKSAH 287
                 L DG +KL A      + + F+N     +              KA   ++   H
Sbjct: 188 EALITYLEDGRLKLKAKGKDRADAYVFLNQRGAPLTDRGVRFILTELMKKASGTLHIHPH 247

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            +R   AT   + GA    +    G   +   + YT 
Sbjct: 248 MLRHTFATHLLNEGADLRSVQELLGHSNLSSTQVYTH 284


>gi|229515837|ref|ZP_04405295.1| tyrosine recombinase XerC [Vibrio cholerae TMA 21]
 gi|229347100|gb|EEO12061.1| tyrosine recombinase XerC [Vibrio cholerae TMA 21]
          Length = 311

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 38/278 (13%), Positives = 93/278 (33%), Gaps = 21/278 (7%)

Query: 68  PTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSGV 123
           P  L   +  +    H    L+  ++ +++   + + +   + G   + ++ +  +R  V
Sbjct: 10  PDALAQPLERFYAYLHTEKGLSQYTQRNYKQQLETMTQYLVQVGLTHWSQLDSAWVRQLV 69

Query: 124 ESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
              K      SS    L+S+R    + + +  +  NP   V  P+++    +    ++M 
Sbjct: 70  MQGKRQGMKASSIATRLSSLRSFLDFLILRGELQANPAKGVSAPRKQRTLPKNLDVDEMA 129

Query: 181 QFKSFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---IT 234
           Q            + R   E +  +GLR ++     V+ +  +   I+    G     + 
Sbjct: 130 QLLEVTDDDPLSIRDRAIMELMYGAGLRLAELVSIDVKDVNLSEGEIRVIGKGNKERKVW 189

Query: 235 V------ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286
                   +         +    +   F++    +++             K  V  + S 
Sbjct: 190 FAGQAQEWVGKWLKLRSQLADSAETALFVSKLGTRISHRSVQKRMAEWGQKQAVASHISP 249

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           H +R   AT   ++      +    G + +   + YT 
Sbjct: 250 HKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTH 287


>gi|269103726|ref|ZP_06156423.1| tyrosine recombinase XerC [Photobacterium damselae subsp. damselae
           CIP 102761]
 gi|268163624|gb|EEZ42120.1| tyrosine recombinase XerC [Photobacterium damselae subsp. damselae
           CIP 102761]
          Length = 306

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 37/268 (13%), Positives = 85/268 (31%), Gaps = 22/268 (8%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV------ESRKHTP 130
           EY +S     L+++++ +++     I  +  +                            
Sbjct: 19  EYLRSER--ELSLHTQQNYKRQLSTIAEQLVEMQVTSWQQLDAGWVRQIASKGMRSGLKA 76

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WS 187
           SS    L+++R    + V Q  +  NP   V  PK+     +    ++M Q  S      
Sbjct: 77  SSLGMRLSALRSFLDFLVFQGDLKANPAKGVSAPKKARPLPKNLDVDEMDQLLSVEGDDP 136

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELP 238
              + R   E +  +GLR S+     ++ +Q     ++    G    +          + 
Sbjct: 137 LSIRDRAMMELMYGAGLRLSELVGLNLKDIQLTKGDLRVIGKGDKERIVPFSGLAKEWVG 196

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATI 296
           +       +    +   F++    +++        +    K  V  + + H +R   AT 
Sbjct: 197 NWLKVRATLAHSDEPALFVSKRGMRISNRNVQKRMEEWGQKQAVSSHINPHKLRHSFATH 256

Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324
             ++      +    G   +   + YT 
Sbjct: 257 MLESSGDLRAVQELLGHANLSTTQIYTH 284


>gi|150026173|ref|YP_001296999.1| integrase/recombinase [Flavobacterium psychrophilum JIP02/86]
 gi|149772714|emb|CAL44197.1| Integrase/recombinase [Flavobacterium psychrophilum JIP02/86]
          Length = 347

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 37/252 (14%), Positives = 80/252 (31%), Gaps = 17/252 (6%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR----SGVESRKHTPSSAIQFLTSM 140
              + ++  ++       +         +IT + +       +   K + S   Q + ++
Sbjct: 85  KRYSPSTIKTYTEALQSFLLFFDQKPITEITNQDVIVYNNEYILKNKLSASYQNQIVNAI 144

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200
           ++ FK  +++  + ++    + RPKR        +KE+++      S   + +     + 
Sbjct: 145 KLYFK-TIKEVKIEVD---KIHRPKRSKLLPNVLSKEEIKLILEAHS-NIKHKTMLSLIY 199

Query: 201 YSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPD----GFMKLLAMTPIGKET 254
             GLR S+        +     I  I+  K        L         +  +        
Sbjct: 200 SCGLRRSELLHLKPTDIDSKRGIVIIRQSKGKKDRIAPLSPKILVMLREYYSNYKPKSWL 259

Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYG 312
           F      +  +        K    KA + K  S H +R   AT   ++G     +    G
Sbjct: 260 FEGQIPGETYSEKSLQNVLKQALEKAKIAKPVSLHWLRHSYATHLLESGTDLRYIQELLG 319

Query: 313 WKTVDQAETYTK 324
             +    E YT 
Sbjct: 320 HSSTKTTEIYTH 331


>gi|190410733|ref|YP_001966071.1| putative integrase [Thermus sp. 4C]
 gi|148608607|gb|ABQ95627.1| putative integrase [Thermus sp. 4C]
          Length = 386

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 55/284 (19%), Positives = 99/284 (34%), Gaps = 34/284 (11%)

Query: 86  SLAVNSRISF----ESYFDQIIRKSGDFD-YRKITTKHIRSGVESRKHTPSSAIQFLTSM 140
             +  +   +      +      + G    + ++ ++HIR+ + SR+ +P  A + L S+
Sbjct: 97  GRSPRTAKEYLMDAGLFARWFRERHGRPPRFEEVGSQHIRAFLASREVSPHRAGRVLASL 156

Query: 141 RVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF-- 196
           R LF++    E +    +P   V+RPK         T  ++ +      +   PR+A   
Sbjct: 157 RKLFRYLAEVEGLPLLKDPTEGVKRPKLPRRLPVYLTPPEVARLLQAAYQNRSPRVALRD 216

Query: 197 ----EFLLYSGLRCSDSCRAGVQHL--QNNIFS--IKTQKTGTIITVELPDGFMKLLA-- 246
                FL  +GLR S++       L  Q+ I        K G    V L     + L   
Sbjct: 217 WALLAFLYGTGLRLSEALALTYADLTYQDGIPHAIRVQGKGGKERVVVLSPTAQRALHQW 276

Query: 247 ----------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN----KSAHGVRKF 292
                      +P         N  +  +A       K  A +AG+      + H +R  
Sbjct: 277 LKHRNLEGHPTSPYIWSHTTGPNRGKPFSARAVEAMVKRVARRAGLKDWRRITPHKLRHS 336

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
            A+   +AG    E+    G  ++   + Y     R RL     
Sbjct: 337 YASALVEAGRGIDEVKELLGHSSISTTQVYVH-VSRKRLEEAAR 379


>gi|70726663|ref|YP_253577.1| hypothetical protein SH1662 [Staphylococcus haemolyticus JCSC1435]
 gi|82582336|sp|Q4L5V4|XERC_STAHJ RecName: Full=Tyrosine recombinase xerC
 gi|68447387|dbj|BAE04971.1| xerC [Staphylococcus haemolyticus JCSC1435]
          Length = 297

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 37/266 (13%), Positives = 97/266 (36%), Gaps = 22/266 (8%)

Query: 85  GSLAVNSRISFESYF---DQIIRKSGDFDYRKITTKHIRSGVE---SRKHTPSSAIQFLT 138
            + + ++  S+       +  + +    + R    K  R+ +    S+    ++  + ++
Sbjct: 16  RNFSAHTLKSYHDDLVQFNHFLEQ-ELINLRTFEYKDARNYLSYLYSQNLKRTTVSRKIS 74

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KSFWSEGSQPRL 194
           ++R  +++ + Q+   INP + +  PK++    + + +E+M+           +G + R+
Sbjct: 75  TLRTFYEFWMTQDETIINPFVQLVHPKKENYLPQFFYEEEMEALFETVAKDTKKGLRDRV 134

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE--------LPDGFMKLL 245
             E L  +G+R S+     ++ +  ++  +K   K      V         +     +  
Sbjct: 135 ILELLYATGIRVSELVNIQLKDIDMSLPGVKVLGKGNKERFVPFGEFCRQSIEQYLREFK 194

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATK-AGV-NKSAHGVRKFSATISADAGAT 303
            +         +N +   +              + AGV     H +R   AT   + GA 
Sbjct: 195 PIQHTKHSFLLVNMNGAPITERGVRYVLNDVVKRTAGVTEIHPHKLRHTFATHLLNQGAD 254

Query: 304 AHELMATYGWKTVDQAETYTKGADRI 329
              + +  G   +     YT  +++ 
Sbjct: 255 LRTVQSLLGHVNLSTTGRYTHVSNQQ 280


>gi|261210165|ref|ZP_05924462.1| tyrosine recombinase XerC [Vibrio sp. RC341]
 gi|260840705|gb|EEX67254.1| tyrosine recombinase XerC [Vibrio sp. RC341]
          Length = 310

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 34/260 (13%), Positives = 90/260 (34%), Gaps = 20/260 (7%)

Query: 85  GSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLT 138
             L++ ++ +++   +   + + + G  ++ ++    +R  V   + +    SS    L+
Sbjct: 28  KGLSLYTQRNYKQQLETMARYLAQMGLANWSQLDAGWVRQLVVLGKRKGMKASSIATRLS 87

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLA 195
           S+R    + + +  +  NP   V  P+++    +    ++M Q            + R  
Sbjct: 88  SLRSFLDFLILRGELQANPAKGVSAPRKQRPLPKNLDVDEMAQLLEVTDDDPLSIRDRAI 147

Query: 196 FEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVE-------LPDGFMKLLA 246
            E +  SGLR ++     V+ +  ++    +  +                +         
Sbjct: 148 MELMYGSGLRLAELVSIDVKDINLRDGEIRVIGKGNKERKVWFAGQAQEWVGKWLKLRSQ 207

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATA 304
           +   G+   F++    +++             K  V  + S H +R   AT   ++    
Sbjct: 208 LADSGEPALFVSKLGTRISHRSVQKRMAEWGQKQAVASHISPHKLRHSFATHMLESSNNL 267

Query: 305 HELMATYGWKTVDQAETYTK 324
             +    G + +   + YT 
Sbjct: 268 RAVQELLGHENIATTQIYTH 287


>gi|228950418|ref|ZP_04112578.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228809233|gb|EEM55694.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
          Length = 369

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 47/312 (15%), Positives = 106/312 (33%), Gaps = 38/312 (12%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE 124
               TL+  ++ + +     S+  ++ + + ++ +  +I   G     K+   HI+   +
Sbjct: 60  PSKVTLEDYLNHWLEIKS-MSIERSTFVGYRAFLNQHVIPSIGMVALHKLNVMHIQKCYK 118

Query: 125 SRKHTPSSAIQFLTSMRVL---FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
           +      +    L   R+L      AV+Q  ++ NP    E PK++   I+ WT+E++++
Sbjct: 119 TAIDKGIANNSVLLMHRILKSALNLAVKQNIISRNPADFAEIPKKERTSIQTWTEEEVKK 178

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--------------NNIFSIKTQ 227
           F    S+ S+  + +   + +G+R  +      Q +               +N      +
Sbjct: 179 FL-LHSQESRYHIGYLLAITTGMRMGEVLGLRWQDVDFEKHTVTINQTSGHDNKIKKTAK 237

Query: 228 KTGTIITVELPDGFMKLLAMTPI--------------GKETFFINNDKQKMNATQFSIWF 273
              +  T+ +P   ++ L    +                +    N     +    F   F
Sbjct: 238 TNSSKRTIPVPKETIECLKKHKVLINQEKLRLGSAYQDFDLINCNEFGMIIKKANFRKNF 297

Query: 274 KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRL 331
                 AGV +   H +R   ATI    G     +    G   +      Y+       +
Sbjct: 298 IRAIHNAGVKEIKFHDLRHTHATILLKQGVNPKIISERLGHTDISMTLSVYSHVL--PNM 355

Query: 332 GIKNSRRISSVV 343
             +  +     +
Sbjct: 356 QEEAVKNFGKSI 367


>gi|254499439|ref|ZP_05112100.1| putative phage integrase family protein [Legionella drancourtii
           LLAP12]
 gi|254351338|gb|EET10212.1| putative phage integrase family protein [Legionella drancourtii
           LLAP12]
          Length = 326

 Score =  117 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 47/304 (15%), Positives = 103/304 (33%), Gaps = 33/304 (10%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFES--------YFDQIIRKSGDFDYRKITTKHIRSGV 123
             L++ ++ +     L+ +S  S+            D   ++    +      +  R  V
Sbjct: 25  DGLLNSFKATLEQQDLSESSISSYIQGINVFTTWALDFYQQEVCLLEITANDLRAYREYV 84

Query: 124 ES-RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK-TEGIRPWTKEDMQQ 181
               +  PS+    +  ++  + WA +   +  NP  ++   KR  T       K+++  
Sbjct: 85  SKILRRKPSTINHHIQVLKRFYAWAAKTNLIPDNPASAIHFVKRATTTKPNALNKDEIHA 144

Query: 182 FKSF-----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTI 232
                         +     + LL SGLR  +     ++ +    ++   ++   K    
Sbjct: 145 LLRASGLSTHGLALRNYAIVQLLLQSGLRVGELNNLLMKDVVIRERSGCVNVVDGKGRKH 204

Query: 233 ITVELPDGFMKLLAM------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284
             + L     + L        +    +  F     ++           + A +A + +  
Sbjct: 205 REIPLNSIARRALTRYLETRDSLGSDDILFTTKRGEQGTIRALQALISSLAKRANITRIN 264

Query: 285 -SAHGVRKFSATISADA--GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
            +AH +R   AT    A  G    EL    G ++V+    YTK A + +L  ++  R   
Sbjct: 265 VTAHTLRHTFATQFLQANPGCLV-ELAMLMGHESVNTTAIYTK-ASKEKLA-EHMERSGV 321

Query: 342 VVDS 345
            +D+
Sbjct: 322 SIDA 325


>gi|303239825|ref|ZP_07326348.1| integrase family protein [Acetivibrio cellulolyticus CD2]
 gi|302592535|gb|EFL62260.1| integrase family protein [Acetivibrio cellulolyticus CD2]
          Length = 351

 Score =  117 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 40/252 (15%), Positives = 88/252 (34%), Gaps = 11/252 (4%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLF 144
            + +V ++ ++  +  +++ +        I    I+  +        SA     ++    
Sbjct: 85  RNYSVKTQKAYLGHVRRLL-QFHKKCIDNIDKDDIKLYLLRLVDANKSAAYIDQAVSAFK 143

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGL 204
              +  + +  +    ++RPKR+ +        ++ +         + R     +  +GL
Sbjct: 144 FLYIDLKNID-DVDFDIKRPKREQKLPSVLNTNEVFKIIESVD-NLKHRAIIMLIYSAGL 201

Query: 205 RCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET---FFINN 259
           R S++    ++ +    N+  IK  K        L +  ++LL             F   
Sbjct: 202 RVSEAANLRIEDIDSKRNLIHIKGAKGKKDRYTLLSNAMLELLRQYFKIYRPECWLFEGQ 261

Query: 260 DK-QKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTV 316
           +  + +        F+  A KAGV K  S H +R   AT   + G     +    G  + 
Sbjct: 262 NGEKHITVRSIQKVFEKAAFKAGVKKKVSVHTLRHSFATHLLENGTDLRYIQELLGHASP 321

Query: 317 DQAETYTKGADR 328
              E YT  ++R
Sbjct: 322 STTEIYTHVSER 333


>gi|16127236|ref|NP_421800.1| integrase/recombinase XerD [Caulobacter crescentus CB15]
 gi|221236037|ref|YP_002518474.1| integrase/recombinase [Caulobacter crescentus NA1000]
 gi|34223000|sp|Q9A437|XERD_CAUCR RecName: Full=Tyrosine recombinase xerD
 gi|13424644|gb|AAK24968.1| integrase/recombinase XerD [Caulobacter crescentus CB15]
 gi|220965210|gb|ACL96566.1| integrase/recombinase (XerD/RipX family) [Caulobacter crescentus
           NA1000]
          Length = 305

 Score =  117 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 44/268 (16%), Positives = 97/268 (36%), Gaps = 26/268 (9%)

Query: 85  GSLAVNSRISFESYFDQ----IIRKSGDF-DYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
            + A N+  ++    +     + R   D  D    T +     + +R  +P++A +  ++
Sbjct: 19  RAAARNTLTAYGKDLEDARGFLSRSGHDLHDADAETIEAYFQDLGARGLSPATAARRRSA 78

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-----GSQPRL 194
           +R  +++ + + +   +P   V  PK      +   ++++++  +  S      G +   
Sbjct: 79  VRQFYRFVLGEGWRTDDPSRRVAAPKAGRPLPKVLERDEIERLLAAASAKDSAQGLRLAC 138

Query: 195 AFEFLLYSGLRCSDSCRAGVQHL-QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE 253
             E +  SGLR S+     +  L ++  + I   K G      L D     +    + + 
Sbjct: 139 MIELIYASGLRISELLALPLLALARDPAYLIVKGKGGKERLAPLNDAARAAVKAYLVERP 198

Query: 254 TFFINNDK------------QKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATISA 298
            F     K             ++   +     +  A  AG+++   S H +R   AT   
Sbjct: 199 AFLPKGQKDSPWLFPSRGATGRLTPRRVGQLLEDAAIAAGIDRQKVSPHVLRHAFATHLL 258

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGA 326
           + GA    +    G   +   + YT  A
Sbjct: 259 EGGADLRVIQTLLGHADIATTQIYTHVA 286


>gi|328541970|ref|YP_004302079.1| Tyrosine recombinase XerD [Polymorphum gilvum SL003B-26A1]
 gi|326411720|gb|ADZ68783.1| Tyrosine recombinase XerD [Polymorphum gilvum SL003B-26A1]
          Length = 308

 Score =  117 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 44/276 (15%), Positives = 85/276 (30%), Gaps = 31/276 (11%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI---QFLTSMR 141
              A N+  S+    D      G    R  T + + + +        +A    + L+++R
Sbjct: 19  RGAAHNTLDSYRRDLDDFAAFLGTTATRDATAEDVSAYLSDLAARGFAASSQARRLSALR 78

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ------FKSFWSEGSQPRLA 195
             FK+   +     +P  ++  PK++    R  ++ ++ +      F +     +  R  
Sbjct: 79  QYFKFLYAEGERGDDPTRTLASPKKRQGLPRILSEAEVDRLIEAACFDATLEHETPGRAL 138

Query: 196 --------FEFLLYSGLRCSDSCRAGVQH-LQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
                    E L  +GLR S+     V   L++        K G    V L     + + 
Sbjct: 139 RAQRLYTLLEVLYATGLRVSELVALPVGAALRDARLIGIRGKGGKERLVPLSPRAQEAMR 198

Query: 247 M--------TPIGKETFFINNDK--QKMNATQFSIWFKAKATKAGVNK---SAHGVRKFS 293
                           +   +           F+   K  A   G++    S H +R   
Sbjct: 199 AYVARRNAEGAYKGSPWLFPSHGESGHFTRQAFARDLKDLARAVGLDAAKVSPHVLRHAF 258

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           A+     GA    +    G   +   + YT   D  
Sbjct: 259 ASHLLQNGADLRVVQQLLGHADISTTQIYTHVLDER 294


>gi|153803069|ref|ZP_01957655.1| tyrosine recombinase XerC [Vibrio cholerae MZO-3]
 gi|124121388|gb|EAY40131.1| tyrosine recombinase XerC [Vibrio cholerae MZO-3]
          Length = 312

 Score =  117 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 38/278 (13%), Positives = 94/278 (33%), Gaps = 21/278 (7%)

Query: 68  PTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSGV 123
           P  L   +  +    H    L++ ++ +++   + + +   + G   + ++ +  +R  V
Sbjct: 10  PDALAQPLERFYAYLHTEKGLSLYTQRNYKQQLETMTQYLVQVGLTHWTQLDSAWVRQLV 69

Query: 124 ESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
              K      SS    L+S+R    + + +  +  NP   V  P+++    +    ++M 
Sbjct: 70  MQGKRQGMKASSIATRLSSLRSFLDFLILRGELQANPAKGVSAPRKQRTLPKNLDVDEMA 129

Query: 181 QFKSFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---IT 234
           Q            + R   E +  +GLR ++     V+ +  +   I+    G     + 
Sbjct: 130 QLLEVTDDDPLSIRDRAIMELMYGAGLRLAELVSIDVKDVNLSEGEIRVIGKGNKERKVW 189

Query: 235 V------ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286
                   +         +    +   F++    +++             K  V  + S 
Sbjct: 190 FAGQAQEWVGKWLKLRSQLADSAETALFVSKLGTRISHRSVQKRMAEWGQKQAVASHISP 249

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           H +R   AT   ++      +    G + +   + YT 
Sbjct: 250 HKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTH 287


>gi|229525024|ref|ZP_04414429.1| tyrosine recombinase XerC [Vibrio cholerae bv. albensis VL426]
 gi|229338605|gb|EEO03622.1| tyrosine recombinase XerC [Vibrio cholerae bv. albensis VL426]
          Length = 311

 Score =  117 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 38/278 (13%), Positives = 93/278 (33%), Gaps = 21/278 (7%)

Query: 68  PTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSGV 123
           P  L   +  +    H    L++ ++ +++   + + +   + G   + ++    +R  V
Sbjct: 10  PDALAQPLERFYAYLHTEKGLSLYTQRNYKQQLETMTQYLVQVGLTHWTQLDAAWVRQLV 69

Query: 124 ESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
              K      SS    L+S+R    + + +  +  NP   V  P+++    +    ++M 
Sbjct: 70  MQGKRQGMKASSIATRLSSLRSFLDFLILRGELQANPAKGVSAPRKQRTLPKNLDVDEMA 129

Query: 181 QFKSFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---IT 234
           Q            + R   E +  +GLR ++     V+ +  +   I+    G     + 
Sbjct: 130 QLLEVTDDDPLSIRDRAIMELMYGAGLRLAELVSIDVKDVNLSEGEIRVIGKGNKERKVW 189

Query: 235 V------ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286
                   +         +    +   F++    +++             K  V  + S 
Sbjct: 190 FAGQAQEWVGKWLKLRSQLADSAETALFVSKLGTRISHRSVQKRMAEWGQKQAVASHISP 249

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           H +R   AT   ++      +    G + +   + YT 
Sbjct: 250 HKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTH 287


>gi|121728305|ref|ZP_01681336.1| tyrosine recombinase XerC [Vibrio cholerae V52]
 gi|153214849|ref|ZP_01949657.1| tyrosine recombinase XerC [Vibrio cholerae 1587]
 gi|153826279|ref|ZP_01978946.1| tyrosine recombinase XerC [Vibrio cholerae MZO-2]
 gi|254226604|ref|ZP_04920185.1| tyrosine recombinase XerC [Vibrio cholerae V51]
 gi|254291937|ref|ZP_04962718.1| tyrosine recombinase XerC [Vibrio cholerae AM-19226]
 gi|297581831|ref|ZP_06943752.1| tyrosine recombinase XerC [Vibrio cholerae RC385]
 gi|121629435|gb|EAX61864.1| tyrosine recombinase XerC [Vibrio cholerae V52]
 gi|124115092|gb|EAY33912.1| tyrosine recombinase XerC [Vibrio cholerae 1587]
 gi|125620876|gb|EAZ49229.1| tyrosine recombinase XerC [Vibrio cholerae V51]
 gi|149739947|gb|EDM54126.1| tyrosine recombinase XerC [Vibrio cholerae MZO-2]
 gi|150422147|gb|EDN14113.1| tyrosine recombinase XerC [Vibrio cholerae AM-19226]
 gi|297533925|gb|EFH72765.1| tyrosine recombinase XerC [Vibrio cholerae RC385]
          Length = 311

 Score =  117 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 38/278 (13%), Positives = 94/278 (33%), Gaps = 21/278 (7%)

Query: 68  PTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSGV 123
           P  L   +  +    H    L++ ++ +++   + + +   + G   + ++ +  +R  V
Sbjct: 10  PDALAQPLERFYAYLHTEKGLSLYTQRNYKQQLETMTQYLVQVGLTHWTQLDSAWVRQLV 69

Query: 124 ESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
              K      SS    L+S+R    + + +  +  NP   V  P+++    +    ++M 
Sbjct: 70  MQGKRQGMKASSIATRLSSLRSFLDFLILRGELQANPAKGVSAPRKQRTLPKNLDVDEMA 129

Query: 181 QFKSFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---IT 234
           Q            + R   E +  +GLR ++     V+ +  +   I+    G     + 
Sbjct: 130 QLLEVTDDDPLSIRDRAIMELMYGAGLRLAELVSIDVKDVNLSEGEIRVIGKGNKERKVW 189

Query: 235 V------ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286
                   +         +    +   F++    +++             K  V  + S 
Sbjct: 190 FAGQAQEWVGKWLKLRSQLADSAETALFVSKLGTRISHRSVQKRMAEWGQKQAVASHISP 249

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           H +R   AT   ++      +    G + +   + YT 
Sbjct: 250 HKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTH 287


>gi|309775658|ref|ZP_07670657.1| integrase/recombinase XerD [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916564|gb|EFP62305.1| integrase/recombinase XerD [Erysipelotrichaceae bacterium 3_1_53]
          Length = 304

 Score =  117 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 50/290 (17%), Positives = 100/290 (34%), Gaps = 32/290 (11%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGVESRKHTP--- 130
           +Y  S +  S +V++R +++    + I   +  G  + +      + + + S +      
Sbjct: 10  QYMDSLN--SGSVHTRDAYQRDIREFISFLQAEGVEELQDADRILVMNYIASLREKSGVS 67

Query: 131 -----SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
                S+  + L+S+R  +++      +A NP L  + PKR          ++M  F S 
Sbjct: 68  GEMKNSTIARKLSSLRSFYRYLNEYVGIAQNPFLYFKTPKRSKRIPEFLFYDEMDTFLSS 127

Query: 186 W----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVEL--- 237
           +     +G + R  FE +   GLR S++    ++ +         T K      V     
Sbjct: 128 FALDTPDGLRDRAMFELMYACGLRVSEAASLRLRDIDLQERILTITGKGNKQRIVPFYAL 187

Query: 238 --------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKAT--KAGVNKSAH 287
                         L        +  FIN   + +         +  A   K  V+   H
Sbjct: 188 AGELVERYLQQVRPLWMQPSQEHDIVFINQRGKGLTTRGIQYRMQVAAAGCKLQVHVHPH 247

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNS 336
             R   AT   D GA    +    G  ++   + Y     +R++    ++
Sbjct: 248 MFRHSFATHLLDNGADLRVVQELLGHSSLSTTQVYVHVTQERLKKAYTHA 297


>gi|228964325|ref|ZP_04125444.1| Integrase [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228795422|gb|EEM42910.1| Integrase [Bacillus thuringiensis serovar sotto str. T04001]
          Length = 376

 Score =  117 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 51/322 (15%), Positives = 99/322 (30%), Gaps = 44/322 (13%)

Query: 45  PAYMSALTGSTPKREYINSPRKKPT----TLKWLISEYRKSAHWGSLAVNSRISFESYF- 99
             ++ + TG   K +   +  +       T + L + Y  +     LA  +  + + YF 
Sbjct: 34  RRFILSRTGKRGKAKLGRTSIEVTQIEIYTFQELFNIYMFAKEAEGLAKRTLENKKGYFL 93

Query: 100 ---DQIIRKSGDFDYRKITTKHIRSGVESRKH--------------------TPSSAIQF 136
                +  +  D     + T  IR  +   K+                    + S     
Sbjct: 94  VFHRYLEERHEDVTPNTLDTNTIREFLYYLKNDHIKHKNNHCIKEKYKSIGVSVSYINTI 153

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FWSEGSQP 192
           +  MR  + + V +EYV +NP   ++  K   + I   + + ++            G + 
Sbjct: 154 MKHMRAFYNFLVEEEYVQLNPFTKIKSLKEAQDNIEALSVDQLKTLLKQPNQRTYAGFRD 213

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTI--ITVELPDGFMKLLAMT 248
            +    L  +G+R S++     + L    NI  +K   T       V +     KLL   
Sbjct: 214 YVLMMLLADTGMRISEALNLQQEDLDFKTNIIELKGTNTKNRQTRYVPISQKTSKLLREL 273

Query: 249 PI-----GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATISADA 300
            +          F       ++  +F    K     +G+     S H  R   A      
Sbjct: 274 LVEIEEFDTLHIFATVYGNAIDPARFRQRLKMYGHNSGIKGVRVSPHTFRHTFAKYYLLN 333

Query: 301 GATAHELMATYGWKTVDQAETY 322
                 L    G  +++    Y
Sbjct: 334 NGDVMTLQKILGHSSIEMVRKY 355


>gi|307942508|ref|ZP_07657856.1| tyrosine recombinase XerD [Roseibium sp. TrichSKD4]
 gi|307774147|gb|EFO33360.1| tyrosine recombinase XerD [Roseibium sp. TrichSKD4]
          Length = 307

 Score =  117 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 39/276 (14%), Positives = 82/276 (29%), Gaps = 31/276 (11%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMR 141
              A N+  S+    D     +   +   + T  I + +          +S  + L++++
Sbjct: 18  RGAAENTLQSYRRDLDDFAEFTAPQNPSAVNTDRISAYLRDLSLRGFAETSQARRLSALK 77

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK--------------SFWS 187
             FK+         +P  ++  PK++    +  + +++ +                +   
Sbjct: 78  QYFKFLYADGIRTDDPTRTLSAPKKRQALPKVLSIDEVDKLIGEAQQAATKKQDSPAKQL 137

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-QNNIFSIKTQKTGTIITVELPDGFMKLLA 246
              +     E L  +GLR S+     V    ++      T K G    V L     K + 
Sbjct: 138 RAQRLYTLLEVLYATGLRVSELVALPVTAAQRDQRLIEVTGKGGKERLVPLSPAAQKAMR 197

Query: 247 MTPIGK--------ETFFINNDKQ--KMNATQFSIWFKAKATKAGVN---KSAHGVRKFS 293
                +          +   +  +        F    K  A    ++    S H +R   
Sbjct: 198 DYIRQRAELGAYATSPWLFPSHGKSGHFTRQAFGRDLKDLAVDTKIDTDKVSPHVLRHAF 257

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           A+     GA    +    G   +   + YT   D  
Sbjct: 258 ASHLLQNGADLRVVQQLLGHADISTTQIYTHVLDER 293


>gi|241667911|ref|ZP_04755489.1| phage integrase family protein [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254876451|ref|ZP_05249161.1| phage integrase [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|254842472|gb|EET20886.1| phage integrase [Francisella philomiragia subsp. philomiragia ATCC
           25015]
          Length = 293

 Score =  117 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 38/264 (14%), Positives = 89/264 (33%), Gaps = 18/264 (6%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI---RSGVESRKHTPSSAIQFLTSMR 141
            + +  +  ++     Q+     D D  K+    I      + ++ ++  +  + L+S+R
Sbjct: 18  KNYSQETINNYRRDLLQLNSSIVDKDITKLENNDILMWVKKLHAQGNSSKTLQRKLSSLR 77

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG---SQPRLAFEF 198
             F + +  E +  NP   ++ PK   +  +    +++             ++    F+ 
Sbjct: 78  SFFNFLINSELIKNNPTTGIKAPKSSKKLPKAVNTDELAYLLDIKPSNNIETRDIACFDL 137

Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT---------GTIITVELPDGFMKLLAMTP 249
           L   G+R S+     ++ +  N  SI+             G+   + L      +     
Sbjct: 138 LYSCGIRLSELSSIELKDININQKSIRVIGKGNKERVVYFGSKTLINLNRWL-NIRDTYS 196

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATK-AGVNKSAHGVRKFSATISADAGATAHELM 308
                 FI+ + + +         +  A K A  +   H +R   AT   D+      + 
Sbjct: 197 PKCNYLFISQNGEHLTNRSIQKRIEIFAKKYATKHIHPHMLRHSFATHVLDSSKDLLAVK 256

Query: 309 ATYGWKTVDQAETYTKGADRIRLG 332
              G   +   + YT   +  +L 
Sbjct: 257 DLLGHADISSTQIYTH-LNFQQLA 279


>gi|160888416|ref|ZP_02069419.1| hypothetical protein BACUNI_00833 [Bacteroides uniformis ATCC 8492]
 gi|156862093|gb|EDO55524.1| hypothetical protein BACUNI_00833 [Bacteroides uniformis ATCC 8492]
          Length = 294

 Score =  117 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 41/263 (15%), Positives = 95/263 (36%), Gaps = 23/263 (8%)

Query: 85  GSLAVNSRISFESYFDQI----IRKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFL 137
            + +  +   + +   ++        GD     +  + +R  + S        ++  + L
Sbjct: 15  RNYSKGTVEYYRADILELQRFGEEMLGDLTPLDVDAELVREWIASLMDKGLASNTINRKL 74

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-----EGSQP 192
           +S+R  +K+ +R+  VA++P   V  PK+K        + +M +           EG + 
Sbjct: 75  SSVRTYYKFLLRRGKVAVDPLRKVTGPKKKKPLPVFLREGEMNRLLDDMDFGEGFEGCRD 134

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLA----- 246
            +  E    +G+R S+      + +  +   +K T K      +   +   + +      
Sbjct: 135 HMIIEMFYATGMRLSELIGLDDKDVDFSASLVKVTGKRNKQRLIPFDEELGRSMREYVNV 194

Query: 247 ---MTPIGKETFFINNDKQKMNATQFSIWFKA--KATKAGVNKSAHGVRKFSATISADAG 301
                P+  + FF+  + +++     +   K           +S H +R   AT   + G
Sbjct: 195 RNEAVPVRSDAFFVRKNGKRLYRGIVACLVKRNLSKVVTVKKRSPHVLRHTFATAMLNNG 254

Query: 302 ATAHELMATYGWKTVDQAETYTK 324
           A    +    G +++   E YT 
Sbjct: 255 ADLGSIKELLGHESLATTEVYTH 277


>gi|194014676|ref|ZP_03053293.1| tyrosine recombinase XerC [Bacillus pumilus ATCC 7061]
 gi|194013702|gb|EDW23267.1| tyrosine recombinase XerC [Bacillus pumilus ATCC 7061]
          Length = 305

 Score =  117 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 45/277 (16%), Positives = 92/277 (33%), Gaps = 28/277 (10%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV------ESRK 127
           L  EY +     + +  +   +    ++ +R               +           + 
Sbjct: 10  LFIEYLQIE--KNYSALTISGYTEAIEEFVRFMNVQGIDGFEEVSYQDTRIYLTEAYEKG 67

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-- 185
            T  +  + ++++R  +K+ +R++ V  NP L V  PK+         +E++++  +   
Sbjct: 68  LTRRTISKKVSALRSFYKFLLREQLVKENPFLLVSLPKQDKRIPSFLYEEELKELFTVSD 127

Query: 186 --WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE------ 236
                G + +   E L  +G+R S+ C      L  ++ ++    K      V       
Sbjct: 128 VSTPLGQRNQAILELLYATGMRVSELCSLKESDLDLSMDTVLVHGKGSKQRYVPFGSYAH 187

Query: 237 ------LPDGFMKLLAMT-PIGKETFFINNDKQKMNATQFSIWFKAKATKAG--VNKSAH 287
                 L DG +KL A          F+N     +              KA   ++   H
Sbjct: 188 EALITYLEDGRLKLKAKGNDRADAYVFLNQRGAPLTDRGVRFILTELMKKASGTLHIHPH 247

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            +R   AT   + GA    +    G   +   + YT 
Sbjct: 248 MLRHTFATHLLNEGADLRSVQELLGHSNLSSTQVYTH 284


>gi|260911952|ref|ZP_05918516.1| tyrosine type site-specific recombinase [Prevotella sp. oral taxon
           472 str. F0295]
 gi|260633899|gb|EEX52025.1| tyrosine type site-specific recombinase [Prevotella sp. oral taxon
           472 str. F0295]
          Length = 386

 Score =  117 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 43/236 (18%), Positives = 86/236 (36%), Gaps = 15/236 (6%)

Query: 121 SGVESRKHTPSSAIQFLT---SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
              +  K  P +    L+    +R     A  +  +  NP   +E  K +       T E
Sbjct: 155 DYRKRIKDKPLARNSKLSYFNKLRACLNQAFEERVIPYNPMRGIESFKPEDGMRMYLTLE 214

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTII 233
           ++++      E    + AF F   +GLR SD  R     +           K +KT    
Sbjct: 215 EVRRLAQTDCEYPNIKRAFLFSCLTGLRRSDIIRMTWSEVFQQGEYTRIIFKQKKTNGQE 274

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRK 291
            +++     +L+      +E  F        + T  +   +    +AG+NK  + H  R 
Sbjct: 275 YLDITGQAAELMGKRGRPEEHVFDEIH----SPTCTNTAIREWVLRAGINKKITFHCARH 330

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
             A +  D G   + +    G + +   + Y K  D+ +   K    I +++++++
Sbjct: 331 TFAVMMLDLGTDIYTVSKLLGHRELSTTQIYAKVLDKNK--QKAVSSIPNILENEN 384


>gi|152994022|ref|YP_001359743.1| phage integrase family site specific recombinase [Sulfurovum sp.
           NBC37-1]
 gi|151425883|dbj|BAF73386.1| site-specific recombinase, phage integrase family [Sulfurovum sp.
           NBC37-1]
          Length = 366

 Score =  117 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 50/330 (15%), Positives = 110/330 (33%), Gaps = 25/330 (7%)

Query: 19  GKIIY-YFRKGHGRRIRLPYPHESTFIPAY--------MSALTGSTPKREYINSPRKKPT 69
            K+ Y  +R+    R      +       Y        ++A+           + ++K  
Sbjct: 24  DKVYYIRYRENGKLREIKVGKYSEGIRENYCNQKLLETVNAIRLGEQPPIINATHKRKIV 83

Query: 70  TLKWLISEYRKSAHWGSLA-VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128
           T   ++++Y KS    +     ++  ++S   Q+    G  D   IT   I +       
Sbjct: 84  TFDEIVTKYFKSKELHNKTNEQTKNRYKS---QLKEYIGSKDIYSITKNDILAIQTDMAQ 140

Query: 129 T--PSSAIQFLTSMRVLFKWAVRQEYVA-INPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +  P +  Q++  ++ ++ +A+ ++  + +NP   ++  K   +  R  + ++++     
Sbjct: 141 SRAPKTVNQYIQFIKAVYNYAIAEDLFSGVNPVKGIKEQKIDNKRERFLSIDEIKALIEE 200

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKT----GTIITVELPD 239
             E     L     L +G R         + L   NN+ ++   K     G      L +
Sbjct: 201 VKENEDLYLFTLLSLSTGGRLGTIMAIAKKDLDFNNNMITLNDIKNEDTYGGFFDNTLKE 260

Query: 240 GFMKLLAMTPIGKETFFINNDK-QKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATI 296
             +K  A      +   +N    ++  +   +  F               H +R   A+ 
Sbjct: 261 ILIKRTANLKPNDKLIVMNERTLRRQLSKVLTKLFNVGIDADDRKNRVVIHTLRHTFASQ 320

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326
            A  G     +      K + Q   Y K A
Sbjct: 321 LAIKGTPIFTIQKLLNHKDIKQTLRYAKLA 350


>gi|325104990|ref|YP_004274644.1| integrase family protein [Pedobacter saltans DSM 12145]
 gi|324973838|gb|ADY52822.1| integrase family protein [Pedobacter saltans DSM 12145]
          Length = 293

 Score =  117 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 41/275 (14%), Positives = 98/275 (35%), Gaps = 26/275 (9%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH------IRSGVESRK 127
           +  +     +    + ++ +S+++  +Q        +   ++  H      + S ++ +K
Sbjct: 3   LERFFNYISFEKKYSAHTVLSYQTDINQYQDFLSVIEADILSATHRDVRNWVVSLMDDQK 62

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            +  +  + +++++ L+ + +R+E + +NP   V  PK           E +     +  
Sbjct: 63  SS-RTVNRKISALKTLYSFLLREELIEVNPMQKVLAPKIAKTLPVFLETEKLNALLDYEG 121

Query: 188 ------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240
                 EG + +L  EFL  +G+R S+      + +     ++K   K      + + + 
Sbjct: 122 IFEEGFEGKRDKLILEFLFGTGVRLSELLGLREKDVDFGNKTVKVLGKGNKERIIPMSES 181

Query: 241 F----MKLLAMTPIG-----KETFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSAHGV 289
                   L     G      +   + N   +          K       +   KS H +
Sbjct: 182 LICSIRDYLLKKKSGVIYNNSDALIVTNKGLQAYPEFIYRTVKRYLSIISSKEKKSPHVL 241

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           R   AT   +AGA  + +    G  ++   + YT 
Sbjct: 242 RHTFATALLNAGADINAIKELLGHASLAATQVYTH 276


>gi|170754911|ref|YP_001781341.1| site-specific tyrosine recombinase XerC [Clostridium botulinum B1
           str. Okra]
 gi|169120123|gb|ACA43959.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum B1 str. Okra]
          Length = 326

 Score =  117 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 54/263 (20%), Positives = 108/263 (41%), Gaps = 24/263 (9%)

Query: 96  ESYFDQI-IRKSGDFDYRKITTKHIRSGV----ESRKHTPSSAIQFLTSMRVLFKWAV-R 149
           E+ F+ I I+   D D + I+   + + V      R +   +  + + +++  F++   +
Sbjct: 59  EAEFNDIEIKDISDEDIKNISLTDLFAFVSFVENYRNNGSYAKARKVATLKSFFRFLQGK 118

Query: 150 QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR--LAFEFLLYSGLRCS 207
            + +  NP L +E PK         T ++ ++  S      + R        L  GLR S
Sbjct: 119 VKIIKENPALELESPKISKRNPVYLTLDESKRLLSSIDGKFKERDLCIVTMFLNCGLRLS 178

Query: 208 DSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA----------MTPIGKETFFI 257
           + C   + +++N+I ++   K     TV L    +K L              + K+  F+
Sbjct: 179 ELCGINISNIKNDILTV-VGKGNKERTVYLNKACIKTLNDYLSVRKEMGEKIVDKDALFL 237

Query: 258 NNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATISADAGA-TAHELMATYGW 313
           + +  ++N     +  K    KAG++    S H +R  +AT+    G      L    G 
Sbjct: 238 SKNYTRINKRSVEMLVKKYVKKAGLDGEKYSPHKLRHTAATLMYKHGGVDIRSLQMILGH 297

Query: 314 KTVDQAETYTK-GADRIRLGIKN 335
           + +   + YT   +DR+R  +K+
Sbjct: 298 ENISTTQIYTHVDSDRLREAVKS 320


>gi|15603566|ref|NP_246640.1| site-specific tyrosine recombinase XerC [Pasteurella multocida
           subsp. multocida str. Pm70]
 gi|34223005|sp|Q9CKC2|XERC_PASMU RecName: Full=Tyrosine recombinase xerC
 gi|12722110|gb|AAK03785.1| XerC [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 295

 Score =  117 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 40/260 (15%), Positives = 91/260 (35%), Gaps = 21/260 (8%)

Query: 85  GSLAVNSRISFESYFDQIIR---KSGDFDYRKITT---KHIRSGVESRKHTPSSAIQFLT 138
             ++ ++  +++    +I+    ++G   ++ +T    + I +          S    L+
Sbjct: 16  RQVSPHTLTNYQRQLYRIVDILAENGITSWQAVTPSIVRFILAQSNKDGLKERSLALRLS 75

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS---FWSEGSQPRLA 195
            +R  F + V+Q+ + +NP   V  PK+     +    E +QQ  +         + R  
Sbjct: 76  VLRRFFTYLVQQQDINVNPATGVSAPKQNRHLPKNIDAEQVQQLLNNDSKEPIDIRDRAI 135

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLLA 246
            E L  SGLR S+     +  +   +  ++    G    +          +       + 
Sbjct: 136 LELLYSSGLRLSELQSLNLNSINTRVREVRVMGKGNKERIVPFGRYASHAIQQWLKVRIL 195

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATA 304
             P   E  F++    ++         +    K G+  + + H +R   AT   +A +  
Sbjct: 196 FNP-KDEALFVSQLGNRLTHRAIQQRLEVWGIKQGLSSHLNPHKLRHSFATHMLEASSDL 254

Query: 305 HELMATYGWKTVDQAETYTK 324
             +    G   +   + YT 
Sbjct: 255 RAVQELLGHSNLSTTQIYTH 274


>gi|290477110|ref|YP_003470023.1| site-specific tyrosine recombinase [Xenorhabdus bovienii SS-2004]
 gi|289176456|emb|CBJ83265.1| site-specific tyrosine recombinase [Xenorhabdus bovienii SS-2004]
          Length = 304

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 42/260 (16%), Positives = 89/260 (34%), Gaps = 20/260 (7%)

Query: 85  GSLAVNSRISFESYF---DQIIRKSGDFDYRKITTKHIR--SGVESRKHTPSSAIQF-LT 138
             L+  +  ++  +      +    G  +++ +    +R  +    R    S+++   L+
Sbjct: 23  RRLSPLTITNYRRHLVVLASMSLDMGIHEWQALDPAKVRMFASRSRRAGLQSASLALRLS 82

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WSEGSQPRLA 195
           S+R    W V Q  +  NP  +V  P++K    +    +++ Q  +         + R  
Sbjct: 83  SLRTFLDWMVIQGELDANPAKAVSAPRKKRHLPKNMDVDEVNQLLNINLNDPLSVRDRTM 142

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLAMT------ 248
            E +  +GLR S+      +HL+          K      V +    ++ L         
Sbjct: 143 MEVMYGAGLRLSELVGLDCRHLELASGEVWVQGKGSKERKVPVGRIALEWLQRWLEMREL 202

Query: 249 --PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATA 304
             P     F      ++++A      F+    + GVN     H +R   AT   ++    
Sbjct: 203 FEPEDNAVFISTKSGKRISARNVQKRFEQWGVRQGVNSHIHPHKLRHSFATHILESSGDL 262

Query: 305 HELMATYGWKTVDQAETYTK 324
             +    G   +   + YT 
Sbjct: 263 RAVQELLGHANLSTTQIYTH 282


>gi|215481987|ref|YP_002324169.1| Tyrosine recombinase xerC [Acinetobacter baumannii AB307-0294]
 gi|213988762|gb|ACJ59061.1| Tyrosine recombinase xerC [Acinetobacter baumannii AB307-0294]
          Length = 398

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 45/296 (15%), Positives = 100/296 (33%), Gaps = 22/296 (7%)

Query: 44  IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII 103
           +  +   +       E    P          ++ Y  SA       + +         I+
Sbjct: 79  MQRFHQRIAQGLAPFEDEVKPANTLREFA--LTIYMPSAEMR--KKSYKDDEAKLRMHIL 134

Query: 104 RKSGDFDYRKITT---KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
              GD+ +  I       + + + S+  T +S  +    + V+F  A+  + + +NP   
Sbjct: 135 PVIGDYPFEDINAGMLNKLLTELRSKGLTNASINRVRALLSVMFNMAINHDLIQVNPVSK 194

Query: 161 VERPKRKTEGIRPWTKEDMQQF----KSFWSEGSQPRLAFEF---LLYSGLRCSDSCRAG 213
           V + K   +  R    +++++      +    G    +       LL +G+R  ++    
Sbjct: 195 VSKFKENNQIERYLNAQEIKRLMDVLNAPHQHGIDNLIIVAIVKFLLLTGVRKREAMDMK 254

Query: 214 VQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFIN-NDKQKMN--ATQ 268
              +     ++ +   K+G    + L    + +L   P      F N    Q  N     
Sbjct: 255 WTDVDLTTGVWLLGENKSGKARRITLNQDALAILHSLPQQHAFIFANPMTGQPFNDMRKT 314

Query: 269 FSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           F    KA + +   N   H +R   A+I+ ++G + + +    G  +    + Y  
Sbjct: 315 FQSIMKAASIR---NIRIHDLRHNFASIAVNSGQSLYVVQHLLGHASPQTTQRYAH 367


>gi|88706575|ref|ZP_01104279.1| integrase [Congregibacter litoralis KT71]
 gi|88699287|gb|EAQ96402.1| integrase [Congregibacter litoralis KT71]
          Length = 440

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 45/331 (13%), Positives = 89/331 (26%), Gaps = 53/331 (16%)

Query: 53  GSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSR-ISFESYFDQIIRKSGDFDY 111
           G            +    +  L+  Y +SA +   A +++ +        +    G    
Sbjct: 85  GRGADPLGEKQSTRNALNIDQLLDAYLESAKFAGKAESTQYMDKSRIKRHLRPLLGPVKV 144

Query: 112 RKITTKHIRSGVESRKHTPSS--------------------AIQFLTSMRVLFKWAVRQE 151
            +++   +R      +   ++                    A   +  +  +F WA+ + 
Sbjct: 145 EQLSRDKVRRLFSDIRDGKTATVEKTSKKRGKARVTGGESVARSSVKLLSAIFTWAIEEG 204

Query: 152 YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-----------------SEGSQPRL 194
               NPC  V   +         T E  +                               
Sbjct: 205 LATENPCKGVNVGQSGVREAILETPEQYKSLFDALDRMQVSNIDPDDPGEVTPIPDAAAN 264

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK--------TGTIITVELPDGFMKLLA 246
           A   L ++G R S+   A    +  +  ++            TG    + LP     ++ 
Sbjct: 265 AIRVLAFTGARKSEITEARWSWVNIDAGTLTVPPKSHKSGHITGKPKVIPLPSPARAVIE 324

Query: 247 MTPI---GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAG 301
                      F        ++       +     +AG+      H +R    TI A  G
Sbjct: 325 SLTRHGEDDFVFPATRGGGGISLPS--KMWIQIRKEAGLPDGITNHSLRHSLGTIMAVQG 382

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           A A ++MA  G   +   + Y   A   R  
Sbjct: 383 AEAAQIMAALGHSQLSTTQRYIHIARDARAA 413


>gi|256751764|ref|ZP_05492637.1| integrase family protein [Thermoanaerobacter ethanolicus CCSD1]
 gi|256749292|gb|EEU62323.1| integrase family protein [Thermoanaerobacter ethanolicus CCSD1]
          Length = 307

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 47/284 (16%), Positives = 106/284 (37%), Gaps = 34/284 (11%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVESRK 127
           LK+ I ++ +   + +L+  S   ++    +    I + G  + + IT  HI+S     K
Sbjct: 3   LKFAIQDFIEDRKFKNLSPVSINGYQRDLQEFYNWITQQGILNIQDITPHHIKSYFMHLK 62

Query: 128 H----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
           +     P +    LT++R  F + V+++ +   P   +E+ K   + I  +T E + Q  
Sbjct: 63  NEKNNNPVTLNHKLTNLRAFFNYMVQEKILKETPVK-IEKQKTDVK-IEAFTDEQVYQML 120

Query: 184 SFWSE---------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTI 232
            ++ +           +  L     L +G+R S+      + +   N+  ++   K+   
Sbjct: 121 RYFRKLKQREKTFYAYRNYLIILTFLGTGIRLSEIVNLKWRDIDLINDKITV-YGKSRKQ 179

Query: 233 ITVELPDGFMKLLA----------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG- 281
            T+ L +   +             +     +  F +  K++++     + F+      G 
Sbjct: 180 RTIPLQERLREEFKEYYAFCKKNNINFTDDDYVFTDIRKKQLSKNAIHLVFRRLKKVMGW 239

Query: 282 --VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
             V  + H  R   A     +G     L    G ++++    Y 
Sbjct: 240 KNVKLAPHTFRHTFAKNWILSGGDVFSLQRVLGHQSIEMTNRYV 283


>gi|238793576|ref|ZP_04637200.1| Tyrosine recombinase [Yersinia intermedia ATCC 29909]
 gi|238727166|gb|EEQ18696.1| Tyrosine recombinase [Yersinia intermedia ATCC 29909]
          Length = 276

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 41/253 (16%), Positives = 85/253 (33%), Gaps = 19/253 (7%)

Query: 91  SRISFESYFDQIIR---KSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMRVLF 144
           +  S+      ++    + G   ++ +    +RS V   K      SS    L+++R   
Sbjct: 2   TITSYRRQLQALMEMGEQMGLMHWQTLDAAQVRSLVSRSKRAGLHSSSLALRLSALRSFL 61

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLAFEFLLY 201
            W V Q  +  NP   V  P+      +    +++ +            + R   E +  
Sbjct: 62  DWLVSQGVLQANPAKGVSTPRSGRHLPKNIDVDEVDKLLDIDLNDPLAVRDRAMLEVMYG 121

Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKTQKTGT--------IITVELPDGFMKLLAMTPIGKE 253
           +GLR S+      +H+      +     G+           V     +++L  +     +
Sbjct: 122 AGLRLSELVGMNCKHVDLASGEVWVMGKGSKERKVPIGRTAVTWLAHWLELRELFEPVDD 181

Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATY 311
             F+ N  ++++A      F     K GV  +   H +R   AT   ++      +    
Sbjct: 182 AIFLANTGKRISARNVQKRFAEWGVKQGVSSHIHPHKLRHSFATHMLESSGDLRAVQELL 241

Query: 312 GWKTVDQAETYTK 324
           G   +   + YT 
Sbjct: 242 GHANLTTTQIYTH 254


>gi|118594103|ref|ZP_01551450.1| Tyrosine recombinase XerC [Methylophilales bacterium HTCC2181]
 gi|118439881|gb|EAV46508.1| Tyrosine recombinase XerC [Methylophilales bacterium HTCC2181]
          Length = 300

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 43/273 (15%), Positives = 87/273 (31%), Gaps = 20/273 (7%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV---ESRK 127
           K  I +Y     +   L+  +  S+      +  +    D +      IR G+    ++ 
Sbjct: 4   KDYIEKYTDYIKFEKRLSALTIKSYLRDIRLLDSELQGKDLQSYQVDDIRRGISVFHAKG 63

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
               S  + L+S R  F +   +   ++NP + ++ PK K    +  + +   +  S   
Sbjct: 64  INGKSLSRMLSSWRGFFDFLNHRYEFSLNPVMGIKAPKAKKLLPQTLSIDHAIKLVSITD 123

Query: 188 ---EGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-QNNIFSIKTQKTGTIITVELPDGFMK 243
               G + R   E    SGLR S+     +  +  +   +    K      V +    ++
Sbjct: 124 KSFLGLRDRAIMELFYSSGLRLSELAAMKLADINMDEQTASILGKGNKSRIVPIGSHALQ 183

Query: 244 LLAMTPI----------GKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRK 291
            L    +               F++     +         K  A K G+  N   H +R 
Sbjct: 184 ALNDWIVMRKKISDFNPRTTHLFLSEKGNALGVRSIQYRLKFWAIKQGIPENIHPHLLRH 243

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK 324
             A+    +      +    G   +   + YT 
Sbjct: 244 SFASHLLQSSQDLRAVQELLGHANISTTQIYTH 276


>gi|46143623|ref|ZP_00134812.2| COG4973: Site-specific recombinase XerC [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|190151161|ref|YP_001969686.1| tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           7 str. AP76]
 gi|303250058|ref|ZP_07336260.1| site-specific tyrosine recombinase XerC [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|303253232|ref|ZP_07339381.1| site-specific tyrosine recombinase XerC [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|254799324|sp|B3GZ58|XERC_ACTP7 RecName: Full=Tyrosine recombinase xerC
 gi|189916292|gb|ACE62544.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           7 str. AP76]
 gi|302647914|gb|EFL78121.1| site-specific tyrosine recombinase XerC [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|302651121|gb|EFL81275.1| site-specific tyrosine recombinase XerC [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
          Length = 306

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 36/259 (13%), Positives = 89/259 (34%), Gaps = 19/259 (7%)

Query: 85  GSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLT 138
              + ++  +++     +     ++G   ++++ +  +R  +     +     S    L 
Sbjct: 23  KQASQHTLSNYQRQLLAVSDMLSQAGISTWQEVNSATVRWIIAQSNKQGLGAKSIALRLV 82

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS---FWSEGSQPRLA 195
           ++R  F + +RQE +++NP + ++ PK      +    E + Q  +         +    
Sbjct: 83  ALRQWFSYLIRQEKMSVNPAVGIKAPKASKRLPKNIDAEQIGQLLTSDSHEPSDLRDLAM 142

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMT------ 248
            E +  SGLR S+     +  +      ++   K      V +    ++ L         
Sbjct: 143 MELMYSSGLRLSELQGLDLGDMDLAGREVRLLGKGNKERIVPIGSKALEALNRWLAVRNQ 202

Query: 249 -PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAH 305
                   F+N    +++     +  +    K G+  +   H +R   AT   +A     
Sbjct: 203 FKPQDNAVFLNKRGGRLSHRSIQLVMQKWGEKQGLESHLHPHKLRHSFATHMLEASGDLR 262

Query: 306 ELMATYGWKTVDQAETYTK 324
            +    G   +   + YT 
Sbjct: 263 AVQELLGHSNLATTQIYTH 281


>gi|229060296|ref|ZP_04197663.1| DNA integration/recombination/invertion protein [Bacillus cereus
           AH603]
 gi|228719023|gb|EEL70639.1| DNA integration/recombination/invertion protein [Bacillus cereus
           AH603]
          Length = 369

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 52/312 (16%), Positives = 106/312 (33%), Gaps = 38/312 (12%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE 124
               TLK  ++ + +     S+  ++   + ++ +  +I   G     K+   HI+   +
Sbjct: 60  PSKVTLKDYLNHWLEIKS-MSIEESTFACYRAFINQHVIPSIGMITLHKLNVMHIQKCYK 118

Query: 125 SRKHTPSSAIQFLTSMRVL---FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
           S      +    L   R+L      AV+Q  ++ NP    E PK++   I+ WT+E++++
Sbjct: 119 SSIDKGITNNSILLMHRILKSSLNLAVKQNVLSRNPAAFAEIPKKEKTSIQTWTEEEVKK 178

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--------------NNIFSIKTQ 227
           F    S+ S+  + +   + +G+R  +      Q +               NN      +
Sbjct: 179 FL-LHSQESRYHIGYLLAITTGMRLGEVLGLRWQDVDFEKHTVTINQTSGHNNKIKKTAK 237

Query: 228 KTGTIITVELPDGFMKLLAMTPI--------------GKETFFINNDKQKMNATQFSIWF 273
              +  T+ +P   ++ L    I                E    N     +    F   F
Sbjct: 238 TNSSKRTIPVPKETIESLKKHKITINKEKLRLGSAYQDLELINCNEFGMVIKRATFRNHF 297

Query: 274 KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRL 331
                 AG+ +   H +R   ATI    G  A  +    G   +      Y+       +
Sbjct: 298 IRTTHNAGIKEIKFHDLRHTHATILLKQGVNAKIISERLGHTDISMTLNVYSHVL--PNM 355

Query: 332 GIKNSRRISSVV 343
             +  +     +
Sbjct: 356 QEEAVKNFGKSI 367


>gi|119943804|ref|YP_941484.1| tyrosine recombinase XerC [Psychromonas ingrahamii 37]
 gi|254799353|sp|A1SQX0|XERC_PSYIN RecName: Full=Tyrosine recombinase xerC
 gi|119862408|gb|ABM01885.1| tyrosine recombinase XerC subunit [Psychromonas ingrahamii 37]
          Length = 299

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 42/275 (15%), Positives = 96/275 (34%), Gaps = 21/275 (7%)

Query: 71  LKWLISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGD------FDYRKITTKHIRSGV 123
           L+ LI  Y    A    L+  +  +++S   + +    +       +      + +   +
Sbjct: 4   LQPLIDTYLNHIASQRGLSPVTITNYQSNLAEFVALLNENKVGCWTELDGQLVRLMVKTL 63

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
             +     S    L+++R    + V+ + ++ NP   +  PK      +  + +DM Q  
Sbjct: 64  HKKGLKARSIATKLSALRSFLDYLVQFDILSNNPAKGIAAPKLDKPLPKNVSVDDMFQLL 123

Query: 184 ---SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPD 239
                     + +   E +  SGLR S+     +Q ++ +   I  T K      + + D
Sbjct: 124 DIDEKDPLSIRDQCMMELMYSSGLRLSELVGINLQDIKLSAKEIMVTGKGSKQRLLPITD 183

Query: 240 GFMK----LLAMTP----IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289
             +      L + P      ++  F++  K++++A       +    K  +      H +
Sbjct: 184 RAVATVKIWLKIRPEFCIKDEKALFVSKQKKRISARNVQARMEKWGLKQALPGHINPHKL 243

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           R   AT   ++      +    G   +   + YT 
Sbjct: 244 RHSFATHMLESSGNLRAVQTLLGHADLATTQIYTH 278


>gi|330719126|ref|ZP_08313726.1| site-specific recombinase, phage integrase family protein
           [Leuconostoc fallax KCTC 3537]
          Length = 308

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 91/278 (32%), Gaps = 28/278 (10%)

Query: 75  ISEYRKSAHWGSL-AVNSRISFESYF----DQIIRKSGDFDYRKITTKHIRSGVE---SR 126
           +  YR    +  L +  +  ++        D + +  G   Y K+ T  IR  +     R
Sbjct: 6   LQLYRDYLEFERLYSAQTIKAYMIDIHEFVDFLKQNGGFTSYAKVQTLDIRVYLNDLYER 65

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ-----Q 181
               ++  + ++S+R+ +++ V    +  NP  +V   K +      + +E+M+      
Sbjct: 66  SLARTTIARKISSLRMFYQFLVANHVLEDNPFENVALRKHQNHLPEFFYEEEMKVLFDTA 125

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELP-- 238
           +        +     E L  +G R ++     +  L  +    +   K      V     
Sbjct: 126 YNQHTKLWQRNAALLELLYATGARVAEIVNLRLPQLDFSKKLVLLRGKGDKERYVPFGKF 185

Query: 239 ----------DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--A 286
                     +   +LL       +  F+NN    +     S        ++ +N     
Sbjct: 186 ADHILQRYTQELRQELLTQYQQDHDFVFVNNRGAPLTTAGVSYILSQLMKQSSLNGKIHP 245

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           H +R   AT   + GA    +    G   +   + YT 
Sbjct: 246 HMLRHTFATHLLNHGADMRTVQELLGHVNLSTTQVYTH 283


>gi|241760809|ref|ZP_04758900.1| integrase/recombinase [Neisseria flavescens SK114]
 gi|241318706|gb|EER55258.1| integrase/recombinase [Neisseria flavescens SK114]
          Length = 298

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 46/268 (17%), Positives = 95/268 (35%), Gaps = 19/268 (7%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH----IRSGVESRKHTP 130
           +  Y K+      + ++  ++     +++R   D     + T+     +   +  +  + 
Sbjct: 11  LELYLKTLLQQGKSEHTVSAYRRDLSELMRLLPDNLENGLPTRRDFVAVLKKLSQKGLSE 70

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           SS ++ L+  R    W V+ E +  +P  +++ P+      +   +E +           
Sbjct: 71  SSLVRKLSVWRQYCSWLVQIEVMESDPTFNMKAPRLPERLPKALPQEPLNHILDHAPVDD 130

Query: 191 ----QPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVEL----PDG 240
               + +  FE +  SGLR S+     +  +       S+K  K G    V L       
Sbjct: 131 ELDVRDKAMFELMYGSGLRLSEIQGLNLDGIVLDEGWVSVK-GKGGKQRQVPLVAKSIAA 189

Query: 241 FMKLL--AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG--VNKSAHGVRKFSATI 296
               L   +   G++  F N +  ++   Q     +A A + G   + S H +R   AT 
Sbjct: 190 LRDYLAVRIAKEGEQALFTNKNGGRLGQRQIQKRLQAWAVRVGSASHISPHMMRHSYATH 249

Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324
              A      +    G   +   + YTK
Sbjct: 250 LLQASGDIRAVQELLGHSNLSATQVYTK 277


>gi|328955348|ref|YP_004372681.1| integrase family protein [Coriobacterium glomerans PW2]
 gi|328455672|gb|AEB06866.1| integrase family protein [Coriobacterium glomerans PW2]
          Length = 314

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 43/266 (16%), Positives = 88/266 (33%), Gaps = 26/266 (9%)

Query: 85  GSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLT 138
             L+ N+   +       I      G      I    + + V +++      +S  + L+
Sbjct: 30  RGLSENTIAGYRRDLSSYIAFLLDEGIDRLDGIDRADVEAFVCAKRDGGYSSASIERALS 89

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFWSEGSQPRL 194
           +++   ++A+R+     +P  S+  P+R+       + E     + Q  +  + G++ R 
Sbjct: 90  AVKGFHRFAIREGLTETHPTASLRLPRREDRLPAVISIEQARALLDQPFAPTAAGARDRA 149

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLL-------- 245
             E L   GLR S+     V+ L  +  F     K      V +       +        
Sbjct: 150 TLEVLYGCGLRVSELIGLDVRDLHLDEEFLHALGKGSKERLVPITGTAAAAMEAYMSGPR 209

Query: 246 ------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISA 298
                 A          +N +  +++        +     AG++    H +R   AT   
Sbjct: 210 SELAAHARRASPSPAVLLNKNGGRLSRQAVHACCERWGRIAGIDGLHPHTLRHSFATHML 269

Query: 299 DAGATAHELMATYGWKTVDQAETYTK 324
             GA    L    G  ++   + YT 
Sbjct: 270 AGGADLRVLQEILGHASITTTQLYTH 295


>gi|319646005|ref|ZP_08000235.1| tyrosine recombinase xerC [Bacillus sp. BT1B_CT2]
 gi|317391755|gb|EFV72552.1| tyrosine recombinase xerC [Bacillus sp. BT1B_CT2]
          Length = 305

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 42/248 (16%), Positives = 89/248 (35%), Gaps = 22/248 (8%)

Query: 99  FDQIIRKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI 155
           F++ +   G   +  +T   +R  +     +  T  +  + ++++R  +K+ +R++ V  
Sbjct: 37  FERFLHVQGIKGFEDVTYPDVRIFLTEAHEKGLTRRTISKKISALRSFYKFLLREKLVKE 96

Query: 156 NPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCR 211
           NP L V  PK+     +   ++++++           G + +   EFL  +G+R S+ C 
Sbjct: 97  NPFLLVSLPKQDKRIPKFLYEKELEELFEVSDLSTPLGQRNQALLEFLYATGMRVSELCS 156

Query: 212 AGVQHLQNNIFSIKTQKTG-------------TIITVELPDGFMKLLAMTPIGKETFFIN 258
                L   + ++     G               + + L +G   LL          F+N
Sbjct: 157 LKESDLDLFLDTVLVHGKGRKQRYIPFGSFAREALDLYLQNGRRILLLKAKEPCPFIFLN 216

Query: 259 NDKQKMNATQFSIWFKA--KATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTV 316
                +             K T   ++   H +R   AT   + GA    +    G   +
Sbjct: 217 QRGGPLTPRGVRYILGELVKKTSGTLHIHPHMLRHTFATHLLNEGADLRSVQELLGHSNL 276

Query: 317 DQAETYTK 324
              + YT 
Sbjct: 277 SSTQVYTH 284


>gi|294789571|ref|ZP_06754806.1| site-specific recombinase, phage integrase family [Simonsiella
           muelleri ATCC 29453]
 gi|294482508|gb|EFG30200.1| site-specific recombinase, phage integrase family [Simonsiella
           muelleri ATCC 29453]
          Length = 247

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 40/236 (16%), Positives = 77/236 (32%), Gaps = 17/236 (7%)

Query: 108 DFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA---INPCLSVERP 164
           D    +IT +H+   +  R   PSSA   +     +F+ A +  Y+     NP   V++ 
Sbjct: 9   DAPLHEITPQHLNRFLAWRSSAPSSANVEIAFFSAIFEHAQKSGYIDFEKKNPVKGVKKN 68

Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
           K +         +             Q R   +  L +G R  D C      + + I +I
Sbjct: 69  KIEKRDNYI-NDKLFDVVYEHAD--QQMRDLMDIALLTGQRPIDICSLHTSQISDGILNI 125

Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF---KAKATK-- 279
           K  KT   +  E+     +++          F+N   + +N    + WF   + +  +  
Sbjct: 126 KQVKTSARLRFEISGSLKEIIDRIAPENGFLFLNKHGKPLNRQLITNWFLNLRKQIMQER 185

Query: 280 -----AGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
                   N     +R  +AT +              G  + +    Y +     +
Sbjct: 186 PELEEELRNFQFRDLRAKAATDAYLQ-NDKETARELLGHTSTNMTNRYIRQVKVQK 240


>gi|239917914|ref|YP_002957472.1| tyrosine recombinase XerD [Micrococcus luteus NCTC 2665]
 gi|239839121|gb|ACS30918.1| tyrosine recombinase XerD [Micrococcus luteus NCTC 2665]
          Length = 321

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 47/277 (16%), Positives = 83/277 (29%), Gaps = 38/277 (13%)

Query: 85  GSLAVNSRISFESYF---DQIIRKSGDFDYRKITTKHIRSGVESRKHT--------PSSA 133
             LA N+  ++        + +  +G      +   H+   V++              SA
Sbjct: 26  RGLAENTLAAYRRDLARYRRWLEAAGVRAPGDVDPGHVAGFVQALATGDDGGRPLAVRSA 85

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEG 189
            + L ++R L ++   +     +P   V  PK  T   R    E +             G
Sbjct: 86  ARVLAAVRGLHRFWALEGLAETDPARDVHPPKPGTRLPRALPVEQVSALLDAVPTDTPAG 145

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHL--------QNNIFSIKT-QKTGTIITVELPDG 240
            + R   EFL  +G R S+     V  +              ++   K      V +   
Sbjct: 146 LRDRALLEFLYGTGARISEVVGLDVDDVVGLAQTGDDGGQPVVRLFGKGSKERVVPIGSY 205

Query: 241 FMKLLAM------------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286
               L                      F+N    +++        K  A +AG+  + S 
Sbjct: 206 AAAALDAWLVRGRPTIMAGAARSTPALFVNACGGRLSRQSAWAVLKRAAERAGLEADVSP 265

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           H +R   AT     GA    +    G  +V   + YT
Sbjct: 266 HTLRHCFATHLLAGGADVRVVQELLGHASVTTTQVYT 302


>gi|159045753|ref|YP_001534547.1| integrase family protein [Dinoroseobacter shibae DFL 12]
 gi|157913513|gb|ABV94946.1| integrase family protein [Dinoroseobacter shibae DFL 12]
          Length = 388

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 56/332 (16%), Positives = 111/332 (33%), Gaps = 20/332 (6%)

Query: 10  FVTKERTRH-GKIIYYFRKGHGRRIRLPYPHES-TFIPAYMS-ALTGSTPKREYINSPRK 66
           +V + R R  G+     RK  G+   L   +++      Y++ AL G  P  E     + 
Sbjct: 43  YVVQYRNRQTGRSR---RKTIGQHGPLMTLYQAREIARGYLADALRGGDPVMEAQARRKA 99

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRSGVES 125
           K  +++ L  +Y  +         S     S  D++ +   G     +++ K I+    S
Sbjct: 100 K--SMRDLADDYMTNHALPKKRPRSAAMDRSLLDRVVLPAFGRQSVDEVSHKDIQRLHNS 157

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
            + TP  A + L  +  +F+ A+R      NP   V R   +    R  +  ++ + +  
Sbjct: 158 LRDTPYQANRVLALLSKMFELAIRWGLRGDNPVKGVPRFAEEKR-YRWLSDNELDRLREA 216

Query: 186 WSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-------KTQKTGTIITVE 236
                  R   A    L +G R  +   +       +           K ++T  +    
Sbjct: 217 LDAHPNQRAANAIRLQLLTGARTGEVLTSQWSDFDLDRGVWVKPSHHTKQKRTEHLPLSA 276

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSAT 295
                ++ +A        F     K          ++ +  + AG+ +   H  R   A+
Sbjct: 277 ATVALLRSIAHGRTDDSPFVFPGRKPGHPIKDLKRFWTSVTSTAGLKDYRLHDNRHTHAS 336

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGAD 327
               +G +   +    G       + Y   AD
Sbjct: 337 HLVSSGHSLPIVGRLLGHTNPMTTQRYAHLAD 368


>gi|261393207|emb|CAX50826.1| tyrosine recombinase XerC [Neisseria meningitidis 8013]
          Length = 305

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 36/278 (12%), Positives = 84/278 (30%), Gaps = 24/278 (8%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD-------YRKITTKHIRSGV 123
                  Y ++      + ++  ++    +++                + ++ +   + +
Sbjct: 6   FAAHFDAYLENIVREGKSEHTVAAYRRDLEELFALLAQMPSEAEGGVPQGLSQRDFTAAL 65

Query: 124 ES---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                R     +  + L+S R    W V +  +  +P   ++ PK+     +   +E + 
Sbjct: 66  RRLSQRGLNARTLARKLSSWRQYCVWLVERGLMRADPTADIKPPKQPERVPKALPQEWLN 125

Query: 181 QFKSF-----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIIT 234
           +              +    FE +  SGLR S+        +  +   +     G     
Sbjct: 126 RMLDLPVDGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGKGRKQRQ 185

Query: 235 VEL----PDGFMKL--LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK--AGVNKSA 286
           V L     +       L  T    +  F   +  +++  Q        A +   G + S 
Sbjct: 186 VPLVGKSVEALKNYLPLRQTASDGKALFTGRNGTRLSQRQIQKRLAQWAAQNGDGRHVSP 245

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           H +R   A     A      +    G  ++   + YTK
Sbjct: 246 HMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTK 283


>gi|310822341|ref|YP_003954699.1| Tyrosine recombinase XerC [Stigmatella aurantiaca DW4/3-1]
 gi|309395413|gb|ADO72872.1| Tyrosine recombinase XerC [Stigmatella aurantiaca DW4/3-1]
          Length = 300

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 50/277 (18%), Positives = 94/277 (33%), Gaps = 26/277 (9%)

Query: 74  LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKS-GDFDYRKITTKH--IRSGVESRK-- 127
           L+ ++R    H    + ++  ++        +   G      +   H  IR  + +    
Sbjct: 7   LLEKFRIHLEHEKGASPHTVRNYLIDLVDFEKYLVGTMKLSLLAGTHAAIRGYLGTLSVD 66

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           H P+S  + L S++  +K+ VRQ+ ++ +P   V+ PK      +    +++       S
Sbjct: 67  HAPASRGRRLASIKSFYKYLVRQKLLSASPAKLVKSPKLPKSLPKVLPVDEVFAILEMPS 126

Query: 188 E----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGTIITVELPDG-- 240
                G + R   E L   GLR S+ C   +  +           K G      + +   
Sbjct: 127 LKTVLGLRDRAILEILYGGGLRISELCGLNLLDVDRSGRIVRVMGKGGKERLCPVNEPSI 186

Query: 241 --FMKLLA------MTPIGK---ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287
                 LA       TP      E  F+N    ++     +        K  + +  S H
Sbjct: 187 RALEAYLARRGELLATPHAGQDPEAMFLNYRGGRLTPRSIARHLDTYVVKCALTRKVSPH 246

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            +R   AT     GA    +    G  ++   + YT 
Sbjct: 247 ALRHSFATHLLGGGADVRSIQELLGHASLSTTQRYTH 283


>gi|294340803|emb|CAZ89198.1| putative XerD or XerC integrase [Thiomonas sp. 3As]
          Length = 340

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 48/319 (15%), Positives = 99/319 (31%), Gaps = 49/319 (15%)

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQII---RKSGDF 109
           + P      SP   P TL+ L ++Y   A     LA  + +++    D ++      G  
Sbjct: 2   AAPGSLLPCSPLNSP-TLRQLAADYLAHAQTERRLAEGTLVNYRRDLDDLLQRAEALGAA 60

Query: 110 DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
               +  +   + + +   +P +    L++ R  F+W  R  +VA NP   V  PK    
Sbjct: 61  PIESLHIRRWAAQLHAGGMSPRAIAARLSAWRSFFRWMGRLGFVAANPVQDVRAPKAAKP 120

Query: 170 GIRPWTKEDMQQFKSFWS---------------------EGSQPRLAFEFLLYSGLRCSD 208
             +  + +      ++                        G++     E L   GLR S+
Sbjct: 121 LPKALSVDQAVALAAYTPQESTPASHPHRRPHQAEPFATRGARVHAIAELLYSCGLRVSE 180

Query: 209 SCRAGVQHLQ--NNIFSI------KTQKTGTIITVELPDGFMKLLA-------------M 247
                V+  +               T K     +V +    +  L               
Sbjct: 181 LTGLDVRASKTARGWIDWDAAEATVTGKGNKRRSVPIGRPALLALRQWLEQRPALLRCDA 240

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAH 305
               +   F+     ++   +  +  +  A  AG++     H +R   A+    +     
Sbjct: 241 DADAQVALFLGARGARLTPQRVWLELREHARAAGLDARVHPHMLRHSFASHVLQSSGDLR 300

Query: 306 ELMATYGWKTVDQAETYTK 324
            +    G  ++   + YT+
Sbjct: 301 AVQELLGHSSIATTQVYTR 319


>gi|160887404|ref|ZP_02068407.1| hypothetical protein BACOVA_05423 [Bacteroides ovatus ATCC 8483]
 gi|156107815|gb|EDO09560.1| hypothetical protein BACOVA_05423 [Bacteroides ovatus ATCC 8483]
          Length = 390

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 54/231 (23%), Positives = 86/231 (37%), Gaps = 16/231 (6%)

Query: 111 YRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV---ERPKRK 167
            R     HI+ G E R  + ++A ++L         AVRQ  +  NP   +   ER + K
Sbjct: 153 LRNFPNSHIKYG-EPRPISENTASRYLGMFSTALNNAVRQGIIRNNPMKELDARERIQPK 211

Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL------QNNI 221
                  T E+++   +  S   + + AF F  ++GLR SD  R    H+      +   
Sbjct: 212 EGKKEYLTIEELRTLIATDSYRPEVKEAFIFACFTGLRLSDMYRLAPMHIFKTADGKGEY 271

Query: 222 FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281
             ++ QKT   + + L +   + L   P G +  F +        T         A  AG
Sbjct: 272 IDMEMQKTEKPVIIPLSEEAKRWLP-KPRGNDIPFFDI---PTTQTVIGRALHKWAEAAG 327

Query: 282 VNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
           + K  S H  R    T+    GA         G   +   E Y K  D+ +
Sbjct: 328 IEKHISFHCSRHTFGTMMLTLGADLFTTSKLMGHSNIQTTEIYAKIVDKKK 378


>gi|260771629|ref|ZP_05880549.1| tyrosine recombinase XerC [Vibrio metschnikovii CIP 69.14]
 gi|260613406|gb|EEX38605.1| tyrosine recombinase XerC [Vibrio metschnikovii CIP 69.14]
          Length = 309

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 37/268 (13%), Positives = 86/268 (32%), Gaps = 22/268 (8%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV------ESRKHTP 130
           EY +S     L+++++ +++     +          +                       
Sbjct: 21  EYLRSE--KGLSLHTQRNYQQQLQAMAGHLHHLGVSEWQHVDAAWVRQLASKGMRDGMKA 78

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---S 187
           SS    L+S+R  F + + +  ++ NP   V  P+++    +    ++M Q         
Sbjct: 79  SSLATRLSSLRSFFDFLILRGELSANPAKGVSAPRKQRPLPKNLDVDEMAQLLEVTDNDP 138

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE--------LP 238
              + R   E +  +GLR ++     ++ L  +   I+   K      V         + 
Sbjct: 139 LSIRDRAMMELMYGAGLRLAELVAINLKDLSFSRGEIRVIGKGDKERKVPFSGQAKEWVG 198

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATI 296
                  ++    +   FI+    +++             K  V  + S H +R   AT 
Sbjct: 199 KWLKVRDSLLKGEEVALFISKLGGRISHRSVQKRMAEWGHKQSVASHISPHKLRHSFATH 258

Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324
             ++      +    G + +   + YT 
Sbjct: 259 VLESSNNLRAVQELLGHENISTTQIYTH 286


>gi|256827378|ref|YP_003151337.1| tyrosine recombinase XerD [Cryptobacterium curtum DSM 15641]
 gi|256583521|gb|ACU94655.1| tyrosine recombinase XerD [Cryptobacterium curtum DSM 15641]
          Length = 302

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 40/271 (14%), Positives = 80/271 (29%), Gaps = 28/271 (10%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYR-------KITTKHIRSGVESRKHTP---SSAI 134
              A ++  ++E    + +                 IT  +I +   S K      +S  
Sbjct: 16  RGAATSTVRAYEHDLTRYVEFLASLQPAGTAISWSHITRDNIVAFESSLKDQGLALTSRA 75

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGS 190
           + L+S++   ++       + NP   +  PK+        + + + +             
Sbjct: 76  RALSSIKSFHRFLEVDGRCSKNPASLISLPKKPQRLPDVLSIDTVGRLLDSSIGDRPVDL 135

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLL---- 245
           + R   E L   GLR S+ C   V  +  ++   +   K      V L     K L    
Sbjct: 136 RDRALLEVLYGCGLRASELCGLDVDRVNTDDGVLLVRGKGDKERIVPLAGTAEKALCDYL 195

Query: 246 --------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATI 296
                             F+N    ++         +    + G++    H +R   AT 
Sbjct: 196 EHGRPVLARAGRTSTMAVFLNARGSRLTRQSVHRIVRNAGLRVGIDNLHPHTLRHSCATH 255

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGAD 327
             + GA    +    G   +   + YT    
Sbjct: 256 LLEGGADLRIIQDMLGHSDIATTQIYTHVQQ 286


>gi|218710942|ref|YP_002418563.1| site-specific tyrosine recombinase XerC [Vibrio splendidus LGP32]
 gi|254799361|sp|B7VMD2|XERC_VIBSL RecName: Full=Tyrosine recombinase xerC
 gi|218323961|emb|CAV20323.1| Integrase/recombinase XerC [Vibrio splendidus LGP32]
          Length = 310

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 42/268 (15%), Positives = 97/268 (36%), Gaps = 22/268 (8%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGV---ESRKHTP 130
           EY +S     L+++++ +++   + +       G  D+ ++    +R             
Sbjct: 22  EYLRSE--KGLSLHTQRNYKQQLETMAAHLVTLGLKDWSQVDAAWVRQLASKGMREGMKA 79

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WS 187
           SS    L+S+R  F + V +  +  NP   V  P+++    +    +++ Q         
Sbjct: 80  SSIATRLSSLRSFFDFLVLRGEMTANPAKGVSAPRKQRPLPKNLDVDEVGQLLDVNEDDP 139

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--------TIITVELPD 239
              + R   E +  +GLR ++     ++ +      I+    G        + +  E  D
Sbjct: 140 LSIRDRAMMEVMYGAGLRLAELVGINLKDVLGRQGEIRVIGKGDKERKAPFSGLAKEWVD 199

Query: 240 GFMKLLAMTPIGKET-FFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATI 296
            ++K+        ET  F++    +++        +    K  V  + S H +R   AT 
Sbjct: 200 KWLKVRGALASPGETALFVSKLGTRISHRSVQKRMEEWGKKQSVASHISPHKLRHSFATH 259

Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324
             ++      +    G + +   + YT 
Sbjct: 260 VLESSQNLRAVQELLGHENISTTQVYTH 287


>gi|52080216|ref|YP_079007.1| site-specific tyrosine recombinase XerC [Bacillus licheniformis
           ATCC 14580]
 gi|52785593|ref|YP_091422.1| site-specific tyrosine recombinase XerC [Bacillus licheniformis
           ATCC 14580]
 gi|81385577|sp|Q65JN5|XERC_BACLD RecName: Full=Tyrosine recombinase xerC
 gi|52003427|gb|AAU23369.1| site-specific integrase/recombinase [Bacillus licheniformis ATCC
           14580]
 gi|52348095|gb|AAU40729.1| CodV [Bacillus licheniformis ATCC 14580]
          Length = 304

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 42/248 (16%), Positives = 89/248 (35%), Gaps = 22/248 (8%)

Query: 99  FDQIIRKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI 155
           F++ +   G   +  +T   +R  +     +  T  +  + ++++R  +K+ +R++ V  
Sbjct: 36  FERFLHVQGIKGFEDVTYPDVRIFLTEAHEKGLTRRTISKKISALRSFYKFLLREKLVKE 95

Query: 156 NPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCR 211
           NP L V  PK+     +   ++++++           G + +   EFL  +G+R S+ C 
Sbjct: 96  NPFLLVSLPKQDKRIPKFLYEKELEELFEVSDLSTPLGQRNQALLEFLYATGMRVSELCS 155

Query: 212 AGVQHLQNNIFSIKTQKTG-------------TIITVELPDGFMKLLAMTPIGKETFFIN 258
                L   + ++     G               + + L +G   LL          F+N
Sbjct: 156 LKESDLDLFLDTVLVHGKGRKQRYIPFGSFAREALDLYLQNGRRILLLKAKEPCPFIFLN 215

Query: 259 NDKQKMNATQFSIWFKA--KATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTV 316
                +             K T   ++   H +R   AT   + GA    +    G   +
Sbjct: 216 QRGGPLTPRGVRYILGELVKKTSGTLHIHPHMLRHTFATHLLNEGADLRSVQELLGHSNL 275

Query: 317 DQAETYTK 324
              + YT 
Sbjct: 276 SSTQVYTH 283


>gi|206602932|gb|EDZ39412.1| Integrase [Leptospirillum sp. Group II '5-way CG']
          Length = 367

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 55/320 (17%), Positives = 107/320 (33%), Gaps = 28/320 (8%)

Query: 22  IYYFRKG-HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRK 80
           I++ R    G+ IR     ++     Y          R     PR    TL   + EY +
Sbjct: 19  IWWVRYTWQGKEIRRKIGRKTDAKNYYARVRAQILEGRYEPEKPRVV--TLGAWLGEYME 76

Query: 81  SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS----GVESRKHTPSSAIQF 136
           +    S++++ +  +  +        G      I T  +        E+ K  PS+  + 
Sbjct: 77  TV--TSVSLSQQRGYAKF---WTNTLGGRPIASIKTAELERIQVSLREAGKLAPSTINRH 131

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196
              ++  F  A+R   +  NP   V   K         ++ D  + K  +S    P +  
Sbjct: 132 FAFLKHTFNIALRDGLIKENPVKGVHFFKEPKGRTVFLSEADEAKLKESFSPEYWPYV-- 189

Query: 197 EFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254
           E  +++GLR S+      +++     + ++   K+G    V L D  + +L      +  
Sbjct: 190 ELAIHTGLRQSEQFNLRWENIDMTSRVLTVPVSKSGLTRHVPLNDTALAVLRDLKARQ-- 247

Query: 255 FFIN--------NDKQKMNATQF-SIWFKAKATKAGVNKS-AHGVRKFSATISADAGATA 304
             ++        +  +  +   F    F     KAG++    H +R    +    AG   
Sbjct: 248 VILSPWVFPSPVDHTKPRDGNAFYKKVFVPAIEKAGLSGVVWHTLRHTFCSRLVQAGVPL 307

Query: 305 HELMATYGWKTVDQAETYTK 324
             +    G K       Y  
Sbjct: 308 TTVQKLAGHKDYSTTLIYAH 327


>gi|86148174|ref|ZP_01066472.1| tyrosine recombinase [Vibrio sp. MED222]
 gi|85834021|gb|EAQ52181.1| tyrosine recombinase [Vibrio sp. MED222]
          Length = 310

 Score =  116 bits (291), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 38/268 (14%), Positives = 91/268 (33%), Gaps = 22/268 (8%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGV---ESRKHTP 130
           EY +S     L+++++ +++   + +       G  D+ ++    +R             
Sbjct: 22  EYLRSE--KGLSLHTQRNYKQQLETMAAHLVTLGLKDWSQVDAAWVRQLASKGMREGMKA 79

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WS 187
           SS    L+S+R  F + V +  +  NP   V  P+++    +    +++ Q         
Sbjct: 80  SSIATRLSSLRSFFDFLVLRGEMTANPAKGVSAPRKQRPLPKNLDVDEVGQLLDVNEDDP 139

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELP 238
              + R   E +  +GLR ++     ++ +      I+    G               + 
Sbjct: 140 LSIRDRAMMEVMYGAGLRLAELVGINLKDVLGRQGEIRVIGKGDKERKAPFSGLAKEWVE 199

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATI 296
                   +   G+   F++    +++        +    K  V  + S H +R   AT 
Sbjct: 200 KWLKVRGELASPGEPALFVSKLGTRISHRSVQKRMEEWGKKQSVASHISPHKLRHSFATH 259

Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324
             ++      +    G + +   + YT 
Sbjct: 260 VLESSQNLRAVQELLGHENISTTQVYTH 287


>gi|170761083|ref|YP_001787113.1| site-specific tyrosine recombinase XerC [Clostridium botulinum A3
           str. Loch Maree]
 gi|169408072|gb|ACA56483.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum A3 str. Loch Maree]
          Length = 326

 Score =  116 bits (291), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 50/255 (19%), Positives = 102/255 (40%), Gaps = 23/255 (9%)

Query: 103 IRKSGDFDYRKITTKHIRSGV----ESRKHTPSSAIQFLTSMRVLFKWAV-RQEYVAINP 157
           I+   D D + I+   + + V      R +   +  + + +++  F++   + + +  NP
Sbjct: 67  IKDISDEDIKNISLTDLFAFVSFVENYRNNGSYAKARKVATLKSFFRFLQGKVKIIKENP 126

Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQ 215
            L +E PK         T ++ ++  S      + R        L  GLR S+ C   + 
Sbjct: 127 ALELESPKISKRNPVYLTLDESKRLLSSIDGKFKERDLCIVTMFLNCGLRLSELCGINIS 186

Query: 216 HLQNNIFSIKTQKTGTIITVELPDG----------FMKLLAMTPIGKETFFINNDKQKMN 265
           +++N+I ++   K     TV L               K +    + K+  F++ +  ++N
Sbjct: 187 NIKNDILTV-VGKGNKERTVYLNKACIKTLNDYLSARKEMGEKIVDKDALFLSKNYTRIN 245

Query: 266 ATQFSIWFKAKATKAGVNK---SAHGVRKFSATISADAGA-TAHELMATYGWKTVDQAET 321
                +  K    KAG++    S H +R  +AT+    G      L    G + +   + 
Sbjct: 246 KRSVEMLVKKYVKKAGLDGEKYSPHKLRHTAATLMYKHGGVDIRSLQMILGHENISTTQI 305

Query: 322 YTK-GADRIRLGIKN 335
           YT   +DR+R  +K+
Sbjct: 306 YTHVDSDRLREAVKS 320


>gi|331701475|ref|YP_004398434.1| Tyrosine recombinase xerC [Lactobacillus buchneri NRRL B-30929]
 gi|329128818|gb|AEB73371.1| Tyrosine recombinase xerC [Lactobacillus buchneri NRRL B-30929]
          Length = 314

 Score =  116 bits (291), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 40/283 (14%), Positives = 92/283 (32%), Gaps = 32/283 (11%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD--------YRKITTKHIRSG 122
           ++W +  Y +S      + ++  +++    +  R   +                +   S 
Sbjct: 11  IQWFLK-YLQSDR--HYSTDTIQAYQQAIAEFTRFLAEIPSERKPLTQVDSFDVEAFLSD 67

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           +  RK+  +S  Q +++++  + + V+   +A NP   V          R   + +M+  
Sbjct: 68  LYERKYARNSIAQKVSALKSFYAFLVKNTVIANNPFEYVHLKSNHRRLPRFLYQNEMRAL 127

Query: 183 KS------FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITV 235
                       G +     E L  +G+R S+     +  +  +N   + T K      V
Sbjct: 128 FQGARQNPNHQLGLRDTAVLETLYATGIRVSECAGIQLNDIDLDNRTILVTGKGNKQRYV 187

Query: 236 E------------LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV- 282
                        L D    ++A         F+N+  + + +            ++ + 
Sbjct: 188 PFGEYAQEAIETYLSDARSPIMAKYHQDHPFLFVNHYGRPLTSRGIEYLMDQIVKQSSLT 247

Query: 283 -NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
                H +R   AT   + GA    +    G  ++   + YT 
Sbjct: 248 TKIHPHMLRHTFATEMLNNGADMRSVQELLGHSSLSTTQIYTH 290


>gi|312109706|ref|YP_003988022.1| integrase [Geobacillus sp. Y4.1MC1]
 gi|311214807|gb|ADP73411.1| integrase family protein [Geobacillus sp. Y4.1MC1]
          Length = 399

 Score =  116 bits (291), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 49/310 (15%), Positives = 112/310 (36%), Gaps = 46/310 (14%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVE 124
            +   L   I E+        L+  +  ++ S+  + I+   G     +I   HI + ++
Sbjct: 70  PEKMKLADFIKEWETKYAVKELSETTLNNYLSHIKNHILPALGHMRIDQIKPVHIVNFLD 129

Query: 125 SRKH-----TP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR---P 173
             K       P    +      ++R + + AV  + +  NP  +V++PK K E ++    
Sbjct: 130 QIKRADGKKKPLATRTIENAYLTIRNILQRAVEWQIIKSNPASAVKKPKSKKEAVKEVQV 189

Query: 174 WTKEDMQQ-FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK------- 225
           + +++++  F++  +E    R+     + +GLR  +       ++      I+       
Sbjct: 190 YDEKEVEALFRAVQNEPFHWRIFTTLAIAAGLRRGELLALEWSNIDLEKGVIRINKAIVK 249

Query: 226 -----------TQKTGTIITVE-------------LPDGFMKLLAMTPIGKETFFINNDK 261
                      T+K+  ++++                   ++   +    KE  F N D 
Sbjct: 250 GRKRSVEKSPKTKKSNRLVSLPKSVVAELKLYRRHWLKQKLQAGDLWKEEKEYLFCNIDG 309

Query: 262 QKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA- 319
           +    T  + W++    +AG+     H +R  SAT+  + G  A  +    G   +    
Sbjct: 310 RHFYPTTPTTWWRRFTKRAGIRYIRLHDLRHTSATLLINQGVHAKIIAERLGHSDIRVTM 369

Query: 320 ETYTKGADRI 329
           + Y     + 
Sbjct: 370 DIYGHALQKA 379


>gi|323705319|ref|ZP_08116894.1| integrase family protein [Thermoanaerobacterium xylanolyticum
           LX-11]
 gi|323535221|gb|EGB24997.1| integrase family protein [Thermoanaerobacterium xylanolyticum
           LX-11]
          Length = 288

 Score =  116 bits (291), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 41/264 (15%), Positives = 98/264 (37%), Gaps = 20/264 (7%)

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII-----RKSGDFDYRKITTKHIRSGV 123
            ++     ++ K  +   L+ N+  S++    Q I          +D  KIT     + +
Sbjct: 2   GSIVQAFIDFLK--NEKKLSDNTVESYKRDITQFIGYLKENNIEYYDVNKITIISYLNFL 59

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
           + +  + S+  + L+S++  +++    +++   P  +++ PK + +     + E + +  
Sbjct: 60  KHKNMSQSTISRHLSSIKSFYQYLFMNKFIDKEPAYTLDAPKIEKKVPLTLSVEQVDKLL 119

Query: 184 SFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239
           S       +G + +   E L  +GL+ S+     ++ +  N   I   K+     + + D
Sbjct: 120 SHEFENSEKGLRDKAILEVLYATGLKVSELISLHIKDVNLNYGYIYC-KSSKERFIPIGD 178

Query: 240 GFMKLL------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA--GVNKSAHGVRK 291
             +  L             E  F+N   + +         K        G + +   +RK
Sbjct: 179 SALNALQNYISVRRKIDQDEFLFLNLRGEPLTRQGCWKIIKEYTNIVNPGFDITPSILRK 238

Query: 292 FSATISADAGATAHELMATYGWKT 315
             A    + GA    +    G+K+
Sbjct: 239 SFAKHMLENGADIRSVQEILGYKS 262


>gi|149198674|ref|ZP_01875717.1| integrase/recombinase XerD [Lentisphaera araneosa HTCC2155]
 gi|149138110|gb|EDM26520.1| integrase/recombinase XerD [Lentisphaera araneosa HTCC2155]
          Length = 394

 Score =  116 bits (291), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 55/337 (16%), Positives = 108/337 (32%), Gaps = 32/337 (9%)

Query: 17  RHGKIIYYFR---KGHGRRIRLPYPH---ESTFIPAYMSALTGSTPKREYINSPRKK--- 67
           + G  IYY R    G  + + L  P+    +     Y+S    S          + K   
Sbjct: 12  KRGN-IYYLRFTVNGKKKVVSLKTPNKAIATKEAEKYLSPQKASNEAEAAEFIAKAKGLI 70

Query: 68  ---PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHI 119
                +L      Y KS        ++  S++ +  + +R             ++T K  
Sbjct: 71  STERISLDDAWDLYFKSKRRRDSGKSTITSYKQHLQKFVRFVEAEYDELIYLDELTPKVA 130

Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
              +ES K +P++  ++   +++ F    +   V  NP   +     K E  R    +++
Sbjct: 131 EEFLESLKVSPNTYNKYKNFLKLYFDTVSKDCGVTKNPFEGIISKSLKKESWRELNDDEV 190

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-----IKTQKTGTIIT 234
            +  + + +G    L     +Y+G+R  D+       +            KT K+  ++ 
Sbjct: 191 DKL-TSYPKGEVWVLM-NLGIYTGMRLKDAALLKWADVDLKREKIIFTPWKTAKSEKVVH 248

Query: 235 VELPDGFMKLL---AMTPIGKETFFIN-NDKQKMNATQFSIWFKAKATKAGV---NKSAH 287
           V +     K L       +  +          + + T  S   K       +       H
Sbjct: 249 VPILPELRKALQWVKQQKLSNDLVLPEMAASYQKSRTNLSSLVKRIFIDLKIRDGKVGFH 308

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            +R    +  A AG     + A  G  +      YT 
Sbjct: 309 SLRHTFVSTCAKAGVPMSVVQAIVGHGSPAMTRHYTH 345


>gi|118477881|ref|YP_895032.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis str. Al Hakam]
 gi|229184697|ref|ZP_04311897.1| DNA integration/recombination/invertion protein [Bacillus cereus
           BGSC 6E1]
 gi|118417106|gb|ABK85525.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis str. Al Hakam]
 gi|228598801|gb|EEK56421.1| DNA integration/recombination/invertion protein [Bacillus cereus
           BGSC 6E1]
          Length = 292

 Score =  116 bits (291), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 45/288 (15%), Positives = 97/288 (33%), Gaps = 37/288 (12%)

Query: 90  NSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL---FK 145
           ++ + + ++ +  II   G     K+   HI+   ++      +    L   R+L     
Sbjct: 6   STFVGYRAFINQHIIPSIGMVALHKLNVMHIQKCYKTAIDRGIANNSVLLMHRILKSALN 65

Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLR 205
            AV+Q  ++ NP    E PK++   I+ WT+E++++F    S+ S+  + +   + +G+R
Sbjct: 66  LAVKQNIISRNPADFAEIPKKERTSIQTWTEEEVKKFL-LHSQESRYHIGYLLAITTGMR 124

Query: 206 CSDSCRAGVQHLQ--------------NNIFSIKTQKTGTIITVELPDGFMKLLAMTPI- 250
             +      Q +               +N      +   +  T+ +P   ++ L    + 
Sbjct: 125 MGEVLGLRWQDVDFEKHTVTINQTSGHDNKIKKTAKTNSSKRTIPVPKETIESLKKHKVL 184

Query: 251 -------------GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATI 296
                          +    N     +    F   F      AGV +   H +R   ATI
Sbjct: 185 INQEKLRLGSAYQDFDLINCNEFGMIIKKANFRKNFIRAIHNAGVKEIKFHDLRHTHATI 244

Query: 297 SADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVV 343
               G     +    G   +      Y+       +  +  +     +
Sbjct: 245 LLKQGVNPKIISERLGHTDISMTLSVYSHVL--PNMQEEAVKNFGKSI 290


>gi|294056182|ref|YP_003549840.1| integrase family protein [Coraliomargarita akajimensis DSM 45221]
 gi|293615515|gb|ADE55670.1| integrase family protein [Coraliomargarita akajimensis DSM 45221]
          Length = 307

 Score =  116 bits (291), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 42/268 (15%), Positives = 87/268 (32%), Gaps = 28/268 (10%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDF-----DYRKITTKHIRSGVES--RKHTPSSAIQFL 137
             L+  +  ++    +  +    +      D+  I +  +RS +    RK +  +    +
Sbjct: 23  RRLSEYTVRNYRHAVEVFVESVQERGNWQGDFAAIRSVDVRSFLVDQGRKVSRRTLHNQV 82

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK----SFWSEG---- 189
           + +R  + +  +Q  V  NP   V  PK      +  T+  M++        W  G    
Sbjct: 83  SGLRAFYLYLRKQGQVESNPFAGVSLPKLDKPLPKFLTESQMRRLLDAPVELWKAGKLSE 142

Query: 190 ---SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT--------IITVELP 238
               +  L  E L   GLR S+ C      +       +    G          + ++  
Sbjct: 143 FDAFRDSLILELLYGGGLRVSELCALNHGAIDLQRGVARVIGKGQKERLCPLGPVAIQCL 202

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATI 296
             F+    ++    +      + ++M         K    +A +  + + H +R   AT 
Sbjct: 203 KTFVDRFKLSAELDQAVACQRNGRRMEPRMVQKQLKLHLAQAELPSDMTPHKLRHSYATH 262

Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324
             D GA    +    G   +   + YT 
Sbjct: 263 LLDNGADLRAVQELLGHANLSTTQVYTH 290


>gi|229073696|ref|ZP_04206809.1| DNA integration/recombination/invertion protein [Bacillus cereus
           F65185]
 gi|228709405|gb|EEL61466.1| DNA integration/recombination/invertion protein [Bacillus cereus
           F65185]
          Length = 369

 Score =  116 bits (291), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 46/312 (14%), Positives = 108/312 (34%), Gaps = 38/312 (12%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE 124
               TLK  ++ + +     S+  ++ + + ++ +  +I   G     K+   HI+   +
Sbjct: 60  PSKVTLKEYLNHWLEIKS-MSIERSTFVGYRAFINQHVIPSIGMVTLHKLNVMHIQKCYK 118

Query: 125 SRKHTPSSAIQFLTSMRVL---FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
           +      +    L   R+L      AV+Q  ++ NP    E PK++   I+ WT++++++
Sbjct: 119 TAIDKGIANNSILLMHRILKSALNLAVKQNIISRNPAAFAEIPKKERTSIQTWTEDEVKK 178

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--------------NNIFSIKTQ 227
           F    S+ S+  + +   + +G+R  +      Q +               +N      +
Sbjct: 179 FL-LHSQESRYHIGYLLAITTGMRMGEVLGLRWQDIDFEKHTVTINQTSGHDNKIKKTAK 237

Query: 228 KTGTIITVELPDGFMKLLAMTPI--------------GKETFFINNDKQKMNATQFSIWF 273
              +  T+ +P   ++ L    I               ++    N   + +    F   F
Sbjct: 238 TNSSKRTIPVPKETIESLKRHKILINKEKLRFGSAYLDQDLINCNEFGKIIKRAHFRKSF 297

Query: 274 KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRL 331
                K G+ +   H +R   AT+    G     +    G   +      Y+       +
Sbjct: 298 IRMTHKVGIKEIKFHDLRHTHATLLLKQGVNPKIISERLGHTDISMTLSVYSHVL--PNM 355

Query: 332 GIKNSRRISSVV 343
             +  +     +
Sbjct: 356 QEEAVKNFGKSI 367


>gi|91215199|ref|ZP_01252171.1| putative site-specific recombinase [Psychroflexus torquis ATCC
           700755]
 gi|91186804|gb|EAS73175.1| putative site-specific recombinase [Psychroflexus torquis ATCC
           700755]
          Length = 296

 Score =  116 bits (291), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 47/253 (18%), Positives = 91/253 (35%), Gaps = 20/253 (7%)

Query: 102 IIRKSGDFDYRKITTKHIRSGVE---SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158
           I+      +  ++    IR  +        T  +  + L++++  FK+ ++ + +A+NP 
Sbjct: 36  ILETYDTREMSEVNYPMIRQWIVGFIELGLTHKTINRKLSTLKTFFKFLLKIQVIAVNPM 95

Query: 159 ---LSVERPKRKTEGIRPWTKEDM-QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGV 214
               S++ PKR+ E       E +   F+    EG +  L  E L  +G+R  +     +
Sbjct: 96  VQHKSLKLPKRQQEAFSVLELEKVSDYFEDVTFEGLRDHLIIELLYATGMRRQELIDLQL 155

Query: 215 QHLQNNIFSIKTQ-KTGTIITVELPDG--------FMKLLAMTPIGKETFFINNDKQKMN 265
             L      +K + K      + L D           +   + P G +  F+ +  + + 
Sbjct: 156 SSLDLKQQQLKVRGKRNKERLIPLLDSISFLIERYLQERSVLLPQGSQ-LFVTSKGKAIY 214

Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
                    +   K    K  S H +R   AT   D GA    +    G  ++   E YT
Sbjct: 215 PNLVYRVVHSYFEKVSTKKKLSPHLLRHAFATHLLDKGADISAIKDLLGHSSLASTEVYT 274

Query: 324 KGADRIRLGIKNS 336
              +   L   + 
Sbjct: 275 HS-NFKELSKAHQ 286


>gi|213622284|ref|ZP_03375067.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 234

 Score =  116 bits (291), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 39/213 (18%), Positives = 76/213 (35%), Gaps = 13/213 (6%)

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
            +   P+S    L+++R  F W V Q  +  NP   V  PK      +    +D+ +   
Sbjct: 1   RKGLGPASLALRLSALRSFFDWLVSQGELKANPAKGVSAPKAPRHLPKNIDVDDVNRLLD 60

Query: 185 F---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT------- 234
                    + R   E +  +GLR S+     ++HL  +   +     G+          
Sbjct: 61  IDLNDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLDTGEVWVMGKGSKERRLPIGRN 120

Query: 235 -VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRK 291
            V   + ++ L  +    +E  F++   ++++A      F     K G+N     H +R 
Sbjct: 121 AVTWIEHWLDLRGLFASDEEALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVHPHKLRH 180

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK 324
             AT   ++      +    G   +   + YT 
Sbjct: 181 SFATHMLESSGDLRGVQELLGHANLSTTQIYTH 213


>gi|237721112|ref|ZP_04551593.1| phage integrase [Bacteroides sp. 2_2_4]
 gi|229449947|gb|EEO55738.1| phage integrase [Bacteroides sp. 2_2_4]
          Length = 327

 Score =  116 bits (291), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 43/285 (15%), Positives = 106/285 (37%), Gaps = 24/285 (8%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP- 130
             +IS++  +     L  +S   +       I   G    ++I T  +R  +  +K    
Sbjct: 41  SQIISKFFIAKAVEGLCQSSLDYYRVILRAFILHVG-KHIKEIVTDDVRVYLAYKKINKC 99

Query: 131 --SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
             ++      ++   F W   +  +  NP L ++  ++  +  +P +++DM++ +S  + 
Sbjct: 100 SDNTLNNIRRTLSSFFTWCTEEGVLDRNPMLRIKGVRQVKKLKKPLSEDDMERLRSL-AR 158

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-----ITVELPDGFMK 243
             + +   EFL  +G R S+     +  +      I     G       ++        +
Sbjct: 159 TKRNKAIIEFLFSTGCRVSEMVNVNLGDVDWQNGQIDVLGKGRKYRTVYLSARCKIALQE 218

Query: 244 LLAMTPIGKETFFINNDKQ------------KMNATQFSIWFKAKATKAGV-NKSAHGVR 290
            +       E  F+++ +             +++     I  +    KAG+ N   H +R
Sbjct: 219 YVDSRTDDLEALFLSDYEGMCQQIKDMNKLSRISKGAVEIMLRNLGKKAGISNVHPHRLR 278

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIK 334
           + +AT +   G    ++    G ++++    Y +   D ++L  +
Sbjct: 279 RTAATTALKRGMPIEQVQKMLGHESIETTTIYAQSTNDEVKLAHE 323


>gi|270264257|ref|ZP_06192524.1| site-specific tyrosine recombinase XerC [Serratia odorifera 4Rx13]
 gi|270041906|gb|EFA15003.1| site-specific tyrosine recombinase XerC [Serratia odorifera 4Rx13]
          Length = 303

 Score =  116 bits (291), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 41/279 (14%), Positives = 97/279 (34%), Gaps = 20/279 (7%)

Query: 66  KKPTTLKWLISEYRKSAH-WGSLAVNSRISFES---YFDQIIRKSGDFDYRKITTKHIR- 120
               +L+  +  + +       L+  +++S+         + ++ G  ++  +    +R 
Sbjct: 3   PVAASLQQPVDAFLRYLKVERQLSPLTQLSYSRQLQALMALAQEMGVTEWPALDAAKVRM 62

Query: 121 -SGVESRKHTPSSAIQF-LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
            +    R    SS++   L+++R    W V Q  +  NP   +  P+      +    ++
Sbjct: 63  LAARSKRAGLQSSSLALRLSALRSFLDWQVSQGALIANPAKGIRTPRSGRHLPKNIDVDE 122

Query: 179 MQQFKSFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---- 231
           + Q  +         + R   E +  +GLR S+      +H+      I     G+    
Sbjct: 123 INQLLNIDLNDPLAVRDRAMLEVMYGAGLRLSELVGLDCRHVDLAAGDIWVLGKGSKERK 182

Query: 232 ----IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KS 285
                  V   + ++ +  +     +  F++N  ++++       F     K GVN    
Sbjct: 183 LPIGRTAVTWLEHWLAMRDLFGPADDAMFLSNQGKRISTRNVQKRFAEWGVKQGVNSHIH 242

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            H +R   AT   ++      +    G   +   + YT 
Sbjct: 243 PHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTH 281


>gi|170745401|ref|YP_001766858.1| integrase family protein [Methylobacterium radiotolerans JCM 2831]
 gi|170659002|gb|ACB28056.1| integrase family protein [Methylobacterium radiotolerans JCM 2831]
          Length = 305

 Score =  116 bits (291), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 44/286 (15%), Positives = 99/286 (34%), Gaps = 19/286 (6%)

Query: 76  SEYRKSAHWGS-LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----SRKHTP 130
             Y +       L+ N+  ++     ++I   G  +   +T   + +  +     R   P
Sbjct: 8   EAYLRHCQLERHLSSNTLAAYRQDISELIAHFGLIEVVAVTGDALVTYADHLSKRRGLAP 67

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQQFKSFWSEG 189
           ++  + L   R LF+W  R   ++ +P    E R +      R    ++M +      + 
Sbjct: 68  ATVKRRLVCARGLFRWLTRTGALSADPFGGTEIRVRIPDRLPRCLATDEMARLARAADDA 127

Query: 190 S-QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---ITVE------LPD 239
           S   RLA   L  +G+R  +     +  +  +   I+    G     + +          
Sbjct: 128 SATTRLATLLLFATGMRVGELVSVRLADIDLDRDVIRIVGKGNRQRQVVIPNESLKDAIR 187

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATIS 297
            + +         E F    + + +         +  A  AG+ ++   H +R  +AT  
Sbjct: 188 EYARTYHADDRASERFLREPNGRSLTTAAIRTRLRRLAKAAGLVRTVTPHMLRHTAATEL 247

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRI-RLGIKNSRRISSV 342
            +AG     +    G +++   + YT  +D   R  ++ +     +
Sbjct: 248 LEAGVDIRFVQRLLGHRSILTTQIYTHVSDIALRTAVRGADLFGRL 293


>gi|308232201|ref|ZP_07415262.2| integrase [Mycobacterium tuberculosis SUMu001]
 gi|308374648|ref|ZP_07436853.2| integrase [Mycobacterium tuberculosis SUMu006]
 gi|308375530|ref|ZP_07444217.2| integrase [Mycobacterium tuberculosis SUMu007]
 gi|308377076|ref|ZP_07441079.2| integrase [Mycobacterium tuberculosis SUMu008]
 gi|308378046|ref|ZP_07481362.2| integrase [Mycobacterium tuberculosis SUMu009]
 gi|308379269|ref|ZP_07485701.2| integrase [Mycobacterium tuberculosis SUMu010]
 gi|308380428|ref|ZP_07489920.2| integrase [Mycobacterium tuberculosis SUMu011]
 gi|308214699|gb|EFO74098.1| integrase [Mycobacterium tuberculosis SUMu001]
 gi|308341194|gb|EFP30045.1| integrase [Mycobacterium tuberculosis SUMu006]
 gi|308346043|gb|EFP34894.1| integrase [Mycobacterium tuberculosis SUMu007]
 gi|308349004|gb|EFP37855.1| integrase [Mycobacterium tuberculosis SUMu008]
 gi|308353729|gb|EFP42580.1| integrase [Mycobacterium tuberculosis SUMu009]
 gi|308357572|gb|EFP46423.1| integrase [Mycobacterium tuberculosis SUMu010]
 gi|308361515|gb|EFP50366.1| integrase [Mycobacterium tuberculosis SUMu011]
          Length = 295

 Score =  116 bits (290), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 47/285 (16%), Positives = 95/285 (33%), Gaps = 10/285 (3%)

Query: 44  IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII 103
           + A+++A   S  K          P + +  I +Y  + +       +    ++      
Sbjct: 9   VEAFLAA-AKSQNKPPGPPPSLHAPPSWRRDIDDYLLNLNAAGQRPATIRLRKTVLCAAA 67

Query: 104 RKSGDFDYRKITTKHIRSGVESRKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162
              G      +T +H+   +  ++H +P     + +++R  F WA   + V      S+ 
Sbjct: 68  HGLG-RPPADVTAEHLLDWLGKQQHLSPEGRKTYRSTLRGFFVWAYEMDRVRDYVADSLP 126

Query: 163 RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222
           + +   +  RP   +  Q   +      +  L       +GLR +++ +A    L +   
Sbjct: 127 KVRCPKQPPRPAGDDVWQAALAKADR--RIELMIRLAGEAGLRRAEAAQAHTGDLMDGGL 184

Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
            +   K G    V + D    L+  TP G    F N     + A                
Sbjct: 185 LLVHGKGGKRRIVPISDYLAALIRDTPHG--YLFPNGTGGHLTAEHVGKLVSRALPG--- 239

Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           + + H +R   AT +         +    G  ++   E YT   D
Sbjct: 240 DATMHTLRHRYATRAYRGSHNLRAVQQLLGHASIVTTERYTALCD 284


>gi|229181836|ref|ZP_04309144.1| DNA integration/recombination/invertion protein [Bacillus cereus
           172560W]
 gi|228601634|gb|EEK59147.1| DNA integration/recombination/invertion protein [Bacillus cereus
           172560W]
          Length = 369

 Score =  116 bits (290), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 43/288 (14%), Positives = 98/288 (34%), Gaps = 37/288 (12%)

Query: 90  NSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL---FK 145
           ++   + ++ +  +I   G     K+   HI+   ++      +    L   R+L     
Sbjct: 83  STFAGYRAFINQHVIPSIGMVALHKLNVMHIQKCYKTAIDKGITNNSILLMHRILKSALN 142

Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLR 205
            AV+Q  ++ NP    E PK++   I+ WT+E++++F S  S+ S+  + +   + +G+R
Sbjct: 143 LAVKQNIISRNPADFAEIPKKEKTPIQTWTEEEVKKFLS-HSQESRYHIGYLLAITTGMR 201

Query: 206 CSDSCRAGVQHLQ--------------NNIFSIKTQKTGTIITVELPDGFMKLLAMTPI- 250
             +      Q +               +N      +   +  T+ +P+  +  L      
Sbjct: 202 LGEVLGLRWQDIDFEKHTVTINQTSGHDNKIKKTAKTNSSKRTIPVPNETIVALKKHKTL 261

Query: 251 -------------GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATI 296
                         ++    +   + +    F   F     K G+ +   H +R   ATI
Sbjct: 262 INKEKLRFGSAYLDQDLINCDEFGRIIKRAHFRKSFIRATHKVGIKEIKFHDLRHTHATI 321

Query: 297 SADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVV 343
               G     +    G   +      Y+       +  +  +     +
Sbjct: 322 LLKQGVNPKIISERLGHTDISMTLSVYSHVL--PNMQEEAVKNFGKSI 367


>gi|315302916|ref|ZP_07873649.1| tyrosine recombinase XerC [Listeria ivanovii FSL F6-596]
 gi|313628712|gb|EFR97112.1| tyrosine recombinase XerC [Listeria ivanovii FSL F6-596]
          Length = 300

 Score =  116 bits (290), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 38/283 (13%), Positives = 99/283 (34%), Gaps = 27/283 (9%)

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK------ITTKHIR 120
           +    + +  +Y  S    + + N+  ++E+      R   +    +      +  +   
Sbjct: 3   QEGKWEQMFLDYLHSER--NYSENTSTAYENDLLDFRRFLNEQAITQYKQVTFLDVRIYL 60

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
           + ++ +  + ++  + ++S+R  + + +R+  +  NP   V   K +    + +  E+M+
Sbjct: 61  TELKQKSFSRTTVARKISSLRSFYTFLLRENVITENPFTYVSHAKNQLRLPKFFYSEEME 120

Query: 181 Q-----FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIIT 234
                 ++   +   + R+  E L  +G+R S+     +  +     +I    K      
Sbjct: 121 ALFQVVYEDNETLTIRDRVLLEVLYGTGIRVSECAGILLTDIDQTYQAILIRGKGNKERY 180

Query: 235 VEL-----------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
           V              D  + L+       ++  IN+    +             +KA + 
Sbjct: 181 VPFGVYAEDAITDYLDCRLALMKRFNKTHDSLLINHYGDPLTTRGIRYCLTKIISKASLT 240

Query: 284 KS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +    H +R   AT   + GA    +    G  ++   + YT 
Sbjct: 241 RKIHPHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTH 283


>gi|258515633|ref|YP_003191855.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771]
 gi|257779338|gb|ACV63232.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771]
          Length = 323

 Score =  116 bits (290), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 42/300 (14%), Positives = 97/300 (32%), Gaps = 26/300 (8%)

Query: 48  MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR--- 104
           M  ++G   +   +           + +  ++ +      +  +      + + +     
Sbjct: 1   MRIISGFRKRSIEVPDETGYKIDFDYAVELFKDAYMVDEWSQRT---LNYHLENLTAFKK 57

Query: 105 --KSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCL 159
              +   +   I+ K +   V+S K+     ++    + ++RV F+    +EY+  NP L
Sbjct: 58  FLTTQAVNISLISAKTLDEYVKSMKNADKKKNTINGRVKTLRVFFRILNEKEYIPDNPAL 117

Query: 160 SVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQ 215
            ++  +     I P++ E +    +        G +  +  + LL +G+R  + C     
Sbjct: 118 GLKTIRGPKPEIFPFSDEQINALLAQPDRTTFAGLRDYMIMQILLDTGVRLEELCNIKYS 177

Query: 216 HLQNN--IFSIKTQKTGTIITVELPDGFMKLLA-----MTPIGKET-FFINNDKQKMNAT 267
            +        ++  K     TV       + +         +  ET   +N D   +   
Sbjct: 178 DVNLKTCRILVRKGKGNKSRTVLFGSETRRTIMKYLKVTGDLDAETNLILNQDGNPLKQR 237

Query: 268 QFSIWFKAKATKAGVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
                    A+ AG+     S H  R   A      G   + L    G  ++     Y +
Sbjct: 238 SVQDRISLHASAAGLKGVRPSPHTFRHTFAKKFLMNGGDPYVLRDLLGHNSMSTVIIYLR 297


>gi|297626642|ref|YP_003688405.1| Integrase/recombinase [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
 gi|296922407|emb|CBL56979.1| Integrase/recombinase [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
          Length = 308

 Score =  116 bits (290), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 50/292 (17%), Positives = 101/292 (34%), Gaps = 29/292 (9%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKH 128
             L ++Y +       + N+  ++ +   ++       G  D   +    +R  + S++ 
Sbjct: 15  AGLFADYLRLQR--RRSANTERAYLTDLRELALFLQGRGVHDPDHVRLTDLRRWLASQQA 72

Query: 129 T--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
           +  P++  +   + RV F WA     +  +P   +  PK      +  T+ ++++     
Sbjct: 73  SEAPATVARRAGTARVFFGWARETGRLGTDPAAGLRSPKLGRRLPQTLTQTEVRELMDAA 132

Query: 187 SE---------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE 236
           +          G +     E L  SGLR S+ C   V  L      ++   K      V 
Sbjct: 133 AAAAAEAGGVRGLRDVAILETLYGSGLRVSELCGLDVGDLDEARGLVRVIGKGDKERIVP 192

Query: 237 L-PDGFMKLLA--------MTPIGKETFFINNDKQKMNATQFSIWFKA--KATKAGVNKS 285
           L   G   + A        + P      F+     ++N            +A     +  
Sbjct: 193 LGLPGLRAIDAWRAVRDQWVAPASANALFLGTRGGRINQRVVRRVVHESMRAVPEAPDIG 252

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD-RIRLGIKNS 336
            HG+R   AT   + GA    +    G  ++   + YT  +D R+R   + +
Sbjct: 253 PHGLRHAMATHLLEGGADLRSVQEMLGHASLSTTQIYTHVSDERVRAAYEQA 304


>gi|254472511|ref|ZP_05085911.1| phage integrase [Pseudovibrio sp. JE062]
 gi|211958794|gb|EEA93994.1| phage integrase [Pseudovibrio sp. JE062]
          Length = 365

 Score =  116 bits (290), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 50/329 (15%), Positives = 98/329 (29%), Gaps = 34/329 (10%)

Query: 34  RLPYPHESTFIPAYMSALTGSTP---KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVN 90
           R   P  +    A    + G              R+K  T+  L   Y +       A  
Sbjct: 21  RHGSPWTTEEARAEAKRVLGDVAHGGDPMAARQARRKDLTVAELCDLYLEEGTATKKAST 80

Query: 91  SRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT--PS--------------SAI 134
                      I    GD     I   H+R+ ++       P               +A 
Sbjct: 81  IATDKGRIERHIKPVIGDLLVSDIKANHVRTLLKKVAEGNLPREGVGPVADKLGGKGTAS 140

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKSFWSEGS 190
           + +  +  +F +A    Y   NP   V+R   +    R  T+ ++    +  +   ++G+
Sbjct: 141 RTVGLLGGIFSFANELGYRTDNPVHGVKRFPDQKNQ-RYLTQSELTRLFELLEEIEADGA 199

Query: 191 QPRL--AFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDG----FM 242
            P+     + L  +G R  +  +     +  +      +  KTG   ++ +         
Sbjct: 200 NPKAVKIIKLLALTGARRGEIEQLKWSEVFLEQGTLHFEDSKTGQK-SIPISAAVIGLLR 258

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGA 302
           +      I     F +            +W   +          H +R   A+++   GA
Sbjct: 259 EAEQERCIDSPYVFPSERGDGFYVGATKVWRDLRTKFGDEKLRMHDLRHSFASLAVAGGA 318

Query: 303 TAHELMATYGWKTVDQAETYTK-GADRIR 330
           +   + A  G K     + Y    AD +R
Sbjct: 319 SLPMIGALLGHKDTATTQRYAHLSADPLR 347


>gi|167038625|ref|YP_001666203.1| phage integrase family protein [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|320117017|ref|YP_004187176.1| integrase family protein [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
 gi|166857459|gb|ABY95867.1| phage integrase family protein [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|319930108|gb|ADV80793.1| integrase family protein [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
          Length = 372

 Score =  116 bits (290), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 51/314 (16%), Positives = 107/314 (34%), Gaps = 48/314 (15%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHIRSGVESRKH 128
           TL   ++++ ++     LA  +  S++   +   +   GD +  K+    I++     K 
Sbjct: 62  TLGQFLNKWYETHCELKLAPKTLKSYKELIELYFKPYLGDIELTKLKPVMIQNYYNKLKE 121

Query: 129 ---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
              + ++       ++   K AV  + ++ NPC  VE PK+    I  W+  D+++ K  
Sbjct: 122 LGLSDTTINYHHRVLKSALKKAVVWQLISKNPCDYVEPPKKNKNEITVWSINDVKKAKEI 181

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---------------NNIFSIKTQKTG 230
           + + +   L F   LY+G+R  + C    + +                     IK  K+ 
Sbjct: 182 FKD-TPIYLHFMLALYTGMRIGEICGLKWEDIDFNNKTCTVKRQYQQVGGKEIIKEPKSE 240

Query: 231 TIIT-VELPDGFMKLLAMTPI---GKETFFINNDKQKM-----------------NATQF 269
           T I  + L    +++L                   +K                   + +F
Sbjct: 241 TSIRVIPLHSDVIEVLKEEKKKQLQNRMLLGEKYNKKYEGYISVWEDGRMKTPEYVSKKF 300

Query: 270 SIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKG-AD 327
           S   KA      +    H +R   A+    AG     +    G   +    + Y+    D
Sbjct: 301 SKILKAYPELPQI--RFHDLRHSCASFLVQAGVPMKVVSEILGHSQIGITMDLYSHVLLD 358

Query: 328 RIRLGIKNSRRISS 341
             +   +  +++  
Sbjct: 359 SKK---EAIKKLEE 369


>gi|95928522|ref|ZP_01311269.1| phage integrase [Desulfuromonas acetoxidans DSM 684]
 gi|95135312|gb|EAT16964.1| phage integrase [Desulfuromonas acetoxidans DSM 684]
          Length = 417

 Score =  116 bits (290), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 64/338 (18%), Positives = 117/338 (34%), Gaps = 28/338 (8%)

Query: 35  LPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNS-RI 93
           +  P        Y   +      R  +   R K  TL+    EY +   +        + 
Sbjct: 74  ITLPDAVQKAQLYRQMIQEGLDPRRTLTERRIK--TLEKFCHEYFE--DFIDQNHKHPKK 129

Query: 94  SFESYFDQIIRKSGDFDYRKITTKHIRSGVE----------SRKHTPSSAIQFLTSMRVL 143
           S       I+   G    ++I ++ +   V+           R+ + S+A Q L+ +  L
Sbjct: 130 SRHMLKRWILPVFGHIPLKQIDSRLVSEFVQQILTTVSQKTERRISGSTAKQALSLLSKL 189

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF-KSFWSEGSQPRL-AFEFLLY 201
           F+ A+ Q  V  NPC  V RPK      R  + ++  +F K+  S   +P+  A   L  
Sbjct: 190 FQCAIDQHLVDANPCDGVRRPKVNRSRERYLSGDEYPRFIKATMSLIDRPQAKAIMILAV 249

Query: 202 SGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMT--PIGKETFFI 257
            GLR S+        +   +N   IK  K G    V L      LL        K   ++
Sbjct: 250 LGLRPSEVLGLAWCDVHLIDNRIHIKQAKNGESRFVTLNSVARDLLQQLYDARKKRAVWV 309

Query: 258 N-NDKQKMN--ATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGW 313
             +  +         S  F+     A + + + + +R+  AT    +G     +      
Sbjct: 310 FPSRGKSSTGHLQSVSKTFERICNMAELPEFNLYDLRRSHATFLLQSGVDLFTIKEALHH 369

Query: 314 KTVDQAETYTKGADRIRLG---IKNSRRISSVVDSDDP 348
           KT+     Y + +    +    +   R + ++    +P
Sbjct: 370 KTLASTMVYARVSSESMVNANELAAQRALEAISGQFEP 407


>gi|293373295|ref|ZP_06619653.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|292631691|gb|EFF50311.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
          Length = 383

 Score =  116 bits (290), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 49/215 (22%), Positives = 89/215 (41%), Gaps = 14/215 (6%)

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSV---ERPKRKTEGIRPWTKEDMQQFKSFWS 187
           S+ + ++ +  V    A++  Y  INP   +   E+ K+        ++E++Q+      
Sbjct: 167 STIVDYVRTFSVAINAAIKDGYKIINPFKLLSSDEKVKQPDSHREYLSQEELQKLMITPC 226

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHL---QNNIFSIK-TQKTGTIITVELPDGFMK 243
                  A+ F  +SGLR SD      +++       F++   QKTG  + + LPD  M+
Sbjct: 227 RRDDIGKAYLFACFSGLRISDIRALRWKNIIVEDGQFFAMLFMQKTGKELKIPLPDKAME 286

Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301
           ++++    ++  F        N T      K  A  AG+NK  + H  R   AT+    G
Sbjct: 287 IISIRGNDEDKVFFL----PSNPTVEDN-LKKWAEAAGINKHLTFHTARHTYATLLLTLG 341

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
           A  + +    G   V   + Y K  D+ ++   N 
Sbjct: 342 ADLYTVSKMLGHTNVATTQIYAKVVDKKKVDAVNL 376


>gi|237795202|ref|YP_002862754.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum Ba4 str. 657]
 gi|229261716|gb|ACQ52749.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum Ba4 str. 657]
          Length = 326

 Score =  116 bits (290), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 50/255 (19%), Positives = 102/255 (40%), Gaps = 23/255 (9%)

Query: 103 IRKSGDFDYRKITTKHIRSGV----ESRKHTPSSAIQFLTSMRVLFKWAV-RQEYVAINP 157
           I+   D D + I+   + + V      R +   +  + + +++  F++   + + +  NP
Sbjct: 67  IKDISDEDIKNISLTDLFAFVSFVENYRNNGSYAKARKVATLKSFFRFLQGKVKIIKENP 126

Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQ 215
            L +E PK         T ++ ++  S      + R        L  GLR S+ C   + 
Sbjct: 127 ALELESPKISKRNPVYLTLDESKRLLSSIDGKFKERDLCIVTMFLNCGLRLSELCGINIS 186

Query: 216 HLQNNIFSIKTQKTGTIITVELPDG----------FMKLLAMTPIGKETFFINNDKQKMN 265
           +++N+I ++   K     TV L               K +    + K+  F++ +  ++N
Sbjct: 187 NIKNDILTV-VGKGNKERTVYLNKACIKTLNDYLSVRKEIGEKIVDKDALFLSKNYTRIN 245

Query: 266 ATQFSIWFKAKATKAGVNK---SAHGVRKFSATISADAGA-TAHELMATYGWKTVDQAET 321
                +  K    KAG++    S H +R  +AT+    G      L    G + +   + 
Sbjct: 246 KRSVEMLVKKYVKKAGLDGEKYSPHKLRHTAATLMYKHGGVDIRSLQMILGHENISTTQI 305

Query: 322 YTK-GADRIRLGIKN 335
           YT   +DR+R  +K+
Sbjct: 306 YTHVDSDRLREAVKS 320


>gi|197284356|ref|YP_002150228.1| integrase [Proteus mirabilis HI4320]
 gi|194681843|emb|CAR41137.1| integrase [Proteus mirabilis HI4320]
          Length = 333

 Score =  116 bits (290), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 54/323 (16%), Positives = 105/323 (32%), Gaps = 19/323 (5%)

Query: 7   LPPFVTKERTRHGKIIYYFR-KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
           LPP +     R G  IYY+R     +   +          A  + L    PK   ++   
Sbjct: 12  LPPNLY---LRKG--IYYYRDVRTKKEFSVGSNKSLAITEAIQANLAIYKPKESLVDRIN 66

Query: 66  KKP-TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
                TL   +  YR   +   L   +   +ES    I     D     +T + + + + 
Sbjct: 67  NVHCVTLHEWLDTYRGKVNSRGLKEKTLYDYESRIKLIKLHFNDCPIENVTPRDVATFIS 126

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
                 + A    ++M   F  A+    +  NP    + PK   +  R  + E+ +   +
Sbjct: 127 EYPKK-AMAKLLRSTMLDAFNEAIADGVIKENPVSVTKPPKTSVQRSR-LSLEEFK--YA 182

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
                 + R  F   + +  R SD        ++N+   +   KTG+ + + L      +
Sbjct: 183 LEHTNDKYRHMFLLAVLTAQRISDIINMKWDDIKNDRLYVTQIKTGSKVAIPLSLRLESI 242

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-----SAHGVRKFSATISAD 299
                I      +N    K+     +   + K  +A         + H +R   +    +
Sbjct: 243 GYS--IKDVLNLMNRSSDKICGNTTAKTLRGKFIEALPEYLENKPTFHEIR-SLSARLYE 299

Query: 300 AGATAHELMATYGWKTVDQAETY 322
              +A       G K++   + Y
Sbjct: 300 EEKSAEFAKKILGHKSMRMTDKY 322


>gi|188585653|ref|YP_001917198.1| integrase family protein [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179350340|gb|ACB84610.1| integrase family protein [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 283

 Score =  116 bits (290), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 53/285 (18%), Positives = 112/285 (39%), Gaps = 23/285 (8%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
           + E+ K+         +  ++  +  + ++   + + ++    HI   +E+     S   
Sbjct: 1   MREFEKTLKLKGYTEKTIKAYIGHIKRFLKVGLNINNKEDIQSHIIFLLENNNSH-SYVN 59

Query: 135 QFLTSMRVLFKWAVRQEYVAI-------NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           Q ++++++L     ++ YV +       N  + V RPK++ +     +++++ +  +  +
Sbjct: 60  QAISALKLLNNEITKKGYVDVHGIKTCVNQQIKVNRPKKERKLPNVLSQKEVLELLTVTT 119

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN--IFSIKTQKTGTIITVELPDGFMKLL 245
              + +     +  SGLR  ++ R   + L     I  IK  K        L D  +K+L
Sbjct: 120 -NIKHKAILCIIYSSGLRVGEAVRLKPEDLDGEQKIIHIKQGKGRKDRYTILSDNALKIL 178

Query: 246 A----MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
                +    K  F   N+   ++       F+    KA +NK  S H +R   AT   +
Sbjct: 179 RNYYKIYQPKKWLFPGQNENLHLSERSVQKIFQKAKQKANINKKVSVHSLRHSFATHLLE 238

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
           AG     +    G ++    E YT       +  +N  RI S +D
Sbjct: 239 AGTDLRYIQKLLGHESSKTTEIYTH------ITTQNISRIESPLD 277


>gi|258514510|ref|YP_003190732.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771]
 gi|257778215|gb|ACV62109.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771]
          Length = 301

 Score =  116 bits (290), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 43/269 (15%), Positives = 81/269 (30%), Gaps = 29/269 (10%)

Query: 85  GSLAVNSRISFESYF----DQIIRKSGDFD-------YRKITTKHIRSGVESRKHTPSSA 133
            + +  +  S++       D         D             +   + ++ +    S+ 
Sbjct: 16  KNASPKTVESYQKDLFDGIDFFSAALNKKDNELLPMDVSHNLMRRYLAQMQQKGLARSTV 75

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKSFWSEG 189
            + L S R  +K+  R++Y+  N    V  PK   +       E +    +   S  S G
Sbjct: 76  ARRLASWRSFYKYLCREDYLQQNHLAGVATPKGNGKLPLFLETEQLKLLLEAPDSTTSLG 135

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAMT 248
            +     E L  +GLR S++    +  L  ++       K      +         L + 
Sbjct: 136 QRDAALLEILYAAGLRVSEAVNLDLSALDFDSRMLKAYGKGSKERMIPFGTYAAAALKLY 195

Query: 249 PIGKET-----------FFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSAT 295
                             F+NN   +++             K G+    S H +R   AT
Sbjct: 196 IKDGRHKLSKISQSEQAVFLNNSGTRLSDRGIRKIIDKYIEKTGLKSAISPHTLRHTFAT 255

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTK 324
              D GA    +    G   +   + YT 
Sbjct: 256 HLLDNGADLRSVQELLGHVRLSTTQIYTH 284


>gi|330900232|gb|EGH31651.1| Phage integrase [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 320

 Score =  116 bits (290), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 54/277 (19%), Positives = 102/277 (36%), Gaps = 32/277 (11%)

Query: 84  WGSLA-VNSRISFESYFDQIIRKSGDF---DYRKITTKHI---RSGVESRKHTPSSAIQF 136
           + +L    +R ++++  +      G     ++R +T  H+   R+ +E R    ++  + 
Sbjct: 33  FANLDNPRTRRAYQNDLEDFCGFVGLASADEFRVVTRSHVLAWRAQLEHRGLAGATIRRK 92

Query: 137 LTSMRVLFKWAVRQE-YVAINPCLSVERPKRKT-EGIRPWTKED-----MQQFKSFWSEG 189
           L ++  LF   +        NP   V+RPK ++ EG  P   +      ++       +G
Sbjct: 93  LAALASLFDHLLESNAIAGGNPVHGVKRPKIESNEGKTPALGDHQAKALLEAPDETTLKG 152

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKT-QKTGTIITVELPDG------ 240
            + R     LLY GLR  ++    V  +Q+   I  +K   K G +  + L         
Sbjct: 153 LRDRALLAVLLYHGLRREEAALLQVSDIQDRRGIQHLKVHGKGGKVRYLPLHPVAAGRIH 212

Query: 241 --FMKLLAMTPIGKETFFINNDKQ----KMNATQFSIWFKAKATKAGV---NKSAHGVRK 291
                        K   FI    +     + A        A A  AG+       HG+R 
Sbjct: 213 QYLESSEHHLTDRKVPLFIPLRGKLTGAGITANGIYTVVAAYAKMAGIEVAGLGVHGLRA 272

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
            +AT + +  A   ++ A  G   +   + Y +  +R
Sbjct: 273 TAATNALEHEADIAKVQAWLGHANISTTKIYDRRENR 309


>gi|269218465|ref|ZP_06162319.1| tyrosine recombinase XerD [Actinomyces sp. oral taxon 848 str.
           F0332]
 gi|269211576|gb|EEZ77916.1| tyrosine recombinase XerD [Actinomyces sp. oral taxon 848 str.
           F0332]
          Length = 255

 Score =  116 bits (290), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 40/233 (17%), Positives = 74/233 (31%), Gaps = 21/233 (9%)

Query: 110 DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
           D R          +E      +S  + + ++R    +A  +     NP   V  PK  + 
Sbjct: 5   DVRPEDVASFAECLEGMAR--ASVARSMAAVRSFHAFAFEEGRTGANPAADVRPPKIPSR 62

Query: 170 GIRPWTKEDMQQFKSFWSE-----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
             +    +D+    +           + R   E L  +G R S++    V  +     S 
Sbjct: 63  LPKAMDIDDVAALIAAGGAGEGPAPLRDRALLEVLYGTGARISEAVGLSVDDVDLAGASA 122

Query: 225 KT-QKTGTIITVEL-----------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW 272
           +   K      V L                  LA +  G  + F+N   + ++       
Sbjct: 123 RLFGKGRKERVVPLGGYAVEAIDAYLVRARPSLASSGPGTPSLFLNTRGRPLSRQSAWAI 182

Query: 273 FKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
            +  A +A +  + S H +R   AT     GA    +    G  ++   + YT
Sbjct: 183 IQNAAERAKLSVHVSPHTLRHSFATHLLQGGADIRVVQELLGHSSLSTTQIYT 235


>gi|111017946|ref|YP_700918.1| site-specific tyrosine recombinase XerD [Rhodococcus jostii RHA1]
 gi|110817476|gb|ABG92760.1| tyrosine recombinase [Rhodococcus jostii RHA1]
          Length = 308

 Score =  116 bits (290), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 46/283 (16%), Positives = 86/283 (30%), Gaps = 34/283 (12%)

Query: 75  ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG----VESRKHT 129
           +  Y          A N+  S+    ++  +   D +   I     +      +  R   
Sbjct: 7   VDSYLDHLAVERGAARNTLGSYRRDLERYTQFLADRELTDIDRIREQDVSDFVIALRSGD 66

Query: 130 PS---------SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
           P+         SA + L ++R   ++A  +   A++    V  P       +     ++ 
Sbjct: 67  PNRELPPLAASSAARALIAVRGFHRFAAAEGMTAVDVARDVRPPSPAKRLPKSLPVNEVL 126

Query: 181 QFKSFW--------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGT 231
                             + R   E L  +G R S++    V  +       +   K G 
Sbjct: 127 ALLEAVGGSGPADGPRAVRDRALLELLYSTGARISEAVGLDVDDVDTETRSVLLRGKGGK 186

Query: 232 IITVELPDGFMKLLAM---------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
              V +    ++ L              G    F+N    +++        +A A  AG+
Sbjct: 187 QRVVPVGRPAVESLDAYLIRGRPALASRGTPALFLNVRGGRLSRQSAWKVLQAAADAAGI 246

Query: 283 --NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
               S H +R   AT   D GA    +    G  +V   + YT
Sbjct: 247 SSAVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYT 289


>gi|153940640|ref|YP_001391047.1| site-specific tyrosine recombinase XerC [Clostridium botulinum F
           str. Langeland]
 gi|152936536|gb|ABS42034.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum F str. Langeland]
 gi|322806030|emb|CBZ03597.1| putative integrase/recombinase [Clostridium botulinum H04402 065]
          Length = 326

 Score =  116 bits (290), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 51/255 (20%), Positives = 103/255 (40%), Gaps = 23/255 (9%)

Query: 103 IRKSGDFDYRKITTKHIRSGV----ESRKHTPSSAIQFLTSMRVLFKWAV-RQEYVAINP 157
           I+   D D + I+   + + V      R +   +  + + +++  F++   + + +  NP
Sbjct: 67  IKDISDEDIKNISLTDLFAFVSFVENYRNNGSYAKARKVATLKSFFRFLQGKVKIIKENP 126

Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQ 215
            L +E PK         T ++ ++  S      + R        L  GLR S+ C   + 
Sbjct: 127 ALELESPKISKRNPVYLTLDESKRLLSSIDGKFKERDLCIVTMFLNCGLRLSELCGINIS 186

Query: 216 HLQNNIFSIKTQKTGTIITVELPDGFMKLLA----------MTPIGKETFFINNDKQKMN 265
           +++N+I ++   K     TV L    +K L              + K+  F++ +  ++N
Sbjct: 187 NIKNDILTV-VGKGNKERTVYLNKACIKTLNDYLSVRKEMGEKIVDKDALFLSKNYTRIN 245

Query: 266 ATQFSIWFKAKATKAGVNK---SAHGVRKFSATISADAGA-TAHELMATYGWKTVDQAET 321
                +  K    KAG++    S H +R  +AT+    G      L    G + +   + 
Sbjct: 246 KRSVEMLVKKYVKKAGLDGEKYSPHKLRHTAATLMYKHGGVDIRSLQMILGHENISTTQI 305

Query: 322 YTK-GADRIRLGIKN 335
           YT   +DR+R  +K+
Sbjct: 306 YTHVDSDRLREAVKS 320


>gi|148379752|ref|YP_001254293.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum A str. ATCC 3502]
 gi|153934110|ref|YP_001384049.1| site-specific tyrosine recombinase XerC [Clostridium botulinum A
           str. ATCC 19397]
 gi|153936224|ref|YP_001387591.1| site-specific tyrosine recombinase XerC [Clostridium botulinum A
           str. Hall]
 gi|168180365|ref|ZP_02615029.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum NCTC 2916]
 gi|226949034|ref|YP_002804125.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum A2 str. Kyoto]
 gi|148289236|emb|CAL83332.1| tyrosine recombinase [Clostridium botulinum A str. ATCC 3502]
 gi|152930154|gb|ABS35654.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum A str. ATCC 19397]
 gi|152932138|gb|ABS37637.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum A str. Hall]
 gi|182668709|gb|EDT80687.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum NCTC 2916]
 gi|226843631|gb|ACO86297.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum A2 str. Kyoto]
          Length = 326

 Score =  116 bits (290), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 51/255 (20%), Positives = 103/255 (40%), Gaps = 23/255 (9%)

Query: 103 IRKSGDFDYRKITTKHIRSGV----ESRKHTPSSAIQFLTSMRVLFKWAV-RQEYVAINP 157
           I+   D D + I+   + + V      R +   +  + + +++  F++   + + +  NP
Sbjct: 67  IKDISDEDIKNISLTDLFAFVSFVENYRNNGSYAKARKVATLKSFFRFLQGKVKIIKENP 126

Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQ 215
            L +E PK         T ++ ++  S      + R        L  GLR S+ C   + 
Sbjct: 127 ALELESPKISKRNPVYLTLDESKRLLSSIDGKFKERDLCIVTMFLNCGLRLSELCGINIS 186

Query: 216 HLQNNIFSIKTQKTGTIITVELPDGFMKLLA----------MTPIGKETFFINNDKQKMN 265
           +++N+I ++   K     TV L    +K L              + K+  F++ +  ++N
Sbjct: 187 NIKNDILTV-VGKGNKERTVYLNKACIKTLNDYLNVRKEMGEKIVDKDALFLSKNYTRIN 245

Query: 266 ATQFSIWFKAKATKAGVNK---SAHGVRKFSATISADAGA-TAHELMATYGWKTVDQAET 321
                +  K    KAG++    S H +R  +AT+    G      L    G + +   + 
Sbjct: 246 KRSVEMLVKKYVKKAGLDGEKYSPHKLRHTAATLMYKHGGVDIRSLQMILGHENISTTQI 305

Query: 322 YTK-GADRIRLGIKN 335
           YT   +DR+R  +K+
Sbjct: 306 YTHVDSDRLREAVKS 320


>gi|20807810|ref|NP_622981.1| site-specific tyrosine recombinase XerC [Thermoanaerobacter
           tengcongensis MB4]
 gi|34222923|sp|Q8RA66|XERC_THETN RecName: Full=Tyrosine recombinase xerC
 gi|20516368|gb|AAM24585.1| Integrase [Thermoanaerobacter tengcongensis MB4]
          Length = 353

 Score =  116 bits (290), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 53/293 (18%), Positives = 99/293 (33%), Gaps = 29/293 (9%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESY-FDQIIRKSGDFDYRKITTKHIRSGV- 123
           + P T+K     Y     +  L        +   FD+I     D D   I +  +     
Sbjct: 59  RSPNTIKAY--AYDLILFFRFLKKRRGKVSDDIPFDEI--DISDVDIDLIESVDLNDLYA 114

Query: 124 ------ESRKHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTK 176
                   R +TP +  + + S+R  + +  R+ + ++ NP   +E PK         T 
Sbjct: 115 YLSFVTNERSNTPPARARKVASLRSFYNYLYRKAKVISKNPTQELESPKLSVRHPIYLTL 174

Query: 177 EDMQQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234
           E+ ++  +      + R        L  GLR S+     +  ++ +  ++   K     T
Sbjct: 175 EESKKLLNSIDGPFKERDYAIITLFLNCGLRVSELVNINLDDIKEDKLTVI-GKGNKQRT 233

Query: 235 VELP--------DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA---GVN 283
           + L         D            K+  F++   ++++        K     A   G  
Sbjct: 234 IYLNEACIKAISDYLKVRPKEGVKDKKALFLSKRLKRISVKTVQYLVKKHLKHANLEGKK 293

Query: 284 KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGAD-RIRLGIK 334
            SAH +R  +AT+    G      L    G   V   + YT   D ++R  + 
Sbjct: 294 YSAHKLRHTAATLMYRYGNVDIRTLQKLLGHSNVSTTQIYTHVDDSQLREAVN 346


>gi|46907504|ref|YP_013893.1| integrase/recombinase XerC [Listeria monocytogenes str. 4b F2365]
 gi|226223880|ref|YP_002757987.1| integrase/recombinase [Listeria monocytogenes Clip81459]
 gi|254852669|ref|ZP_05242017.1| integrase/recombinase XerC [Listeria monocytogenes FSL R2-503]
 gi|254932406|ref|ZP_05265765.1| integrase/recombinase XerC [Listeria monocytogenes HPB2262]
 gi|255520259|ref|ZP_05387496.1| integrase/recombinase [Listeria monocytogenes FSL J1-175]
 gi|300765313|ref|ZP_07075297.1| integrase/recombinase XerC [Listeria monocytogenes FSL N1-017]
 gi|71153411|sp|Q720E4|XERC_LISMF RecName: Full=Tyrosine recombinase xerC
 gi|259710432|sp|C1L2I5|XERC_LISMC RecName: Full=Tyrosine recombinase xerC
 gi|46880772|gb|AAT04070.1| integrase/recombinase XerC [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|225876342|emb|CAS05051.1| Putative integrase/recombinase [Listeria monocytogenes serotype 4b
           str. CLIP 80459]
 gi|258605987|gb|EEW18595.1| integrase/recombinase XerC [Listeria monocytogenes FSL R2-503]
 gi|293583963|gb|EFF95995.1| integrase/recombinase XerC [Listeria monocytogenes HPB2262]
 gi|300513996|gb|EFK41059.1| integrase/recombinase XerC [Listeria monocytogenes FSL N1-017]
 gi|328468566|gb|EGF39566.1| tyrosine recombinase xerC [Listeria monocytogenes 1816]
 gi|328475121|gb|EGF45905.1| tyrosine recombinase xerC [Listeria monocytogenes 220]
          Length = 300

 Score =  116 bits (290), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 38/273 (13%), Positives = 95/273 (34%), Gaps = 27/273 (9%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK------ITTKHIRSGVESRKHTP 130
           +Y  S    + +VN+  ++E+      R   +           +  +   + ++ +  + 
Sbjct: 13  DYLHSER--NYSVNTSTAYENDLLDFRRFLNEQAITTYQQVTFLDVRIYLTELKQKSFSR 70

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-----FKSF 185
           ++  + ++S+R  + + +R+  +  NP   V   K +    + +  E+M+      ++  
Sbjct: 71  TTVARKISSLRSFYTFLLRENVINENPFTYVSHAKNQLRLPKFFYSEEMEALFQVVYEDN 130

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVEL------- 237
            +   + R+  E L  +G+R S+     +  L  +  +I    K      V         
Sbjct: 131 ETLTLRDRVLLEVLYGTGIRVSECAGILLPDLDTSYQAILIRGKGNKERYVPFGVYAEDA 190

Query: 238 ----PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRK 291
                     L++      +   +N+    +             +KA + +    H +R 
Sbjct: 191 ITDYLPERANLMSRYKKSHDALLVNHYGDPLTTRGIRYCLSKIISKASLTRKIHPHMLRH 250

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK 324
             AT   + GA    +    G  ++   + YT 
Sbjct: 251 TFATDLLNNGADMRTVQELLGHASLSSTQIYTH 283


>gi|301311823|ref|ZP_07217745.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           20_3]
 gi|300829925|gb|EFK60573.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           20_3]
          Length = 380

 Score =  116 bits (290), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 59/331 (17%), Positives = 119/331 (35%), Gaps = 43/331 (12%)

Query: 26  RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG 85
           R+ + + +R     +     A ++A  G+ P+ +  +       T+   + +  +     
Sbjct: 56  RRQNAQTLRKAEDIQRERTEALLNAKVGTVPESKSSDMLLSDWMTI---VRKNHEHREAR 112

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH----------TPSSAIQ 135
            L        ++    +++   D     +  +     ++  +           TP +A  
Sbjct: 113 DL-----NGIDNARKNLLKFRADVRLCDVDRQFYIDYIDWLRSSCKTAWGKQITPKTAHS 167

Query: 136 FLTSMRVLFKWAVRQEYVAINP------CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
           + T++R     AVR+  +  NP         ++ P+ K +     T E++++  +     
Sbjct: 168 YYTTLRTALNEAVRERLIESNPWYKLEMTEKIKVPESKRD---FLTIEEIKKMIATPFFN 224

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHL---QNNIF-SIKTQKTGTIITVELPDGFMKLL 245
            Q R A+ F  + GLR SD  +   + +         S+   KT   + + L    +K L
Sbjct: 225 EQVRQAYLFSCFCGLRISDIRKLRWRDISISGGQWLVSVVMTKTTNPVYIPLSSQAVKWL 284

Query: 246 A----MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
                 TP G             N +   +  K  A KAGV K  + H  R   A +   
Sbjct: 285 PERNGCTPDG------LVFGGLPNTSNLCVSLKNWADKAGVKKNVTFHTARHSCAVLLLT 338

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIR 330
            GA  + +    G ++V   + Y K  D+ +
Sbjct: 339 LGADIYTVSKILGHRSVRATQVYAKIVDKKK 369


>gi|237722727|ref|ZP_04553208.1| bacteriophage integrase [Bacteroides sp. 2_2_4]
 gi|293373708|ref|ZP_06620055.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|317473968|ref|ZP_07933247.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
 gi|229448537|gb|EEO54328.1| bacteriophage integrase [Bacteroides sp. 2_2_4]
 gi|292631363|gb|EFF49994.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|316909810|gb|EFV31485.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
          Length = 380

 Score =  116 bits (290), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 59/331 (17%), Positives = 119/331 (35%), Gaps = 43/331 (12%)

Query: 26  RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG 85
           R+ + + +R     +     A ++A  G+ P+ +  +       T+   + +  +     
Sbjct: 56  RRQNAQTLRKAEDIQRERTEALLNAKVGTVPESKSSDMLLSDWMTI---VRKNHEHREAR 112

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH----------TPSSAIQ 135
            L        ++    +++   D     +  +     ++  +           TP +A  
Sbjct: 113 DL-----NGIDNARKNLLKFRADVRLCDVDRQFYIDYIDWLRSSCKTAWGKQITPKTAHS 167

Query: 136 FLTSMRVLFKWAVRQEYVAINP------CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
           + T++R     AVR+  +  NP         ++ P+ K +     T E++++  +     
Sbjct: 168 YYTTLRTALNEAVRERLIESNPWYKLEMTEKIKVPESKRD---FLTIEEIKKMIATPFFN 224

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHL---QNNIF-SIKTQKTGTIITVELPDGFMKLL 245
            Q R A+ F  + GLR SD  +   + +         S+   KT   + + L    +K L
Sbjct: 225 EQVRQAYLFSCFCGLRISDIRKLRWRDISISGGQWLVSVVMTKTTNPVYIPLSSQAVKWL 284

Query: 246 A----MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
                 TP G             N +   +  K  A KAGV K  + H  R   A +   
Sbjct: 285 PERNGCTPDG------LVFGGLPNTSNLCVSLKNWADKAGVKKNVTFHTARHSCAVLLLT 338

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIR 330
            GA  + +    G ++V   + Y K  D+ +
Sbjct: 339 LGADIYTVSKILGHRSVRATQVYAKIVDKKK 369


>gi|229145530|ref|ZP_04273914.1| Integrase/recombinase [Bacillus cereus BDRD-ST24]
 gi|228637983|gb|EEK94429.1| Integrase/recombinase [Bacillus cereus BDRD-ST24]
          Length = 326

 Score =  116 bits (290), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 44/274 (16%), Positives = 96/274 (35%), Gaps = 20/274 (7%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVE--- 124
           + +     + K+     L   +   +++    ++R    G   Y ++T +HI   +    
Sbjct: 33  SWEEAFGLFHKAGILKGLREATLFHYQAQLKSLLRALPVGIKPY-EVTKEHIEDAIVFCK 91

Query: 125 -SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
             R   PS+    + + +  FK+    +++ INP   +++ K + + +   T + ++   
Sbjct: 92  VKRNLQPSTINIVIRANKTFFKFLFENKHIPINPIKDIKKLKARAKEVEVLTPKQLKTLL 151

Query: 184 SFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVEL 237
           S        G +       L+ +GLR ++     V  +  + ++  +K  KT     V +
Sbjct: 152 SKVDRKTWNGIRDYAILLVLIETGLRQNEILNLSVLDVVWEQDLLLVKHTKTYHQRKVPI 211

Query: 238 PD----GFMKLLAMTP-IGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVR 290
            D       + L +   +  +  F     + +  +         A  A +    S H  R
Sbjct: 212 TDNTKNALKRWLLIRGEVYTKRLFCGISGKALTNSGLRQMIYKYAKLANIQSRCSPHIFR 271

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              A+I    G     L    G   +     YT 
Sbjct: 272 HTFASIYLRNGGDLFSLQQIMGHSDITMTRRYTH 305


>gi|163759949|ref|ZP_02167033.1| tyrosine recombinase [Hoeflea phototrophica DFL-43]
 gi|162282907|gb|EDQ33194.1| tyrosine recombinase [Hoeflea phototrophica DFL-43]
          Length = 313

 Score =  116 bits (290), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 47/275 (17%), Positives = 96/275 (34%), Gaps = 30/275 (10%)

Query: 85  GSLAVNSRISFESYFDQ---IIRKSGDFDYRK--ITTKHIRSGVESRKHTPSSAIQFLTS 139
              A+N+  ++    D    +++  G    R    T + + S + +R  +P+S  + L++
Sbjct: 20  RGAALNTLEAYRRDLDDASSVVKALGSTLDRANADTIRTVISDLAARGFSPASQARRLSA 79

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----------- 188
           +R  +K+   +     +P   VE P+++    +  + +D+ +  +               
Sbjct: 80  LRQFYKFLHAEGLRDDDPTGVVESPRKRRSLPKILSVDDVSRLLAQAEADISKARDESET 139

Query: 189 --GSQPRLAFEFLLYSGLRCSDSCRAGVQHL-QNNIFSIKTQKTGTIITVELPDGFMKLL 245
               + R   E L  +G+R S+      + L ++  F I   K      V +       L
Sbjct: 140 TQRIRFRALLELLYATGMRVSELVGLPYRVLAEDGRFLIIRGKGAKERMVPMSRPARLAL 199

Query: 246 AMTPIG--------KETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSA 294
                            F  N+    ++   F+   K  A +AG+     S H +R   A
Sbjct: 200 EAWMAEIGEVAEETGFLFPANSSDGHLSRQVFARELKDVAARAGLPSAKVSPHVLRHAFA 259

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           +     GA    +    G   +   + YT   D  
Sbjct: 260 SHLLAGGADLRAVQKLLGHTDISTTQIYTHVLDER 294


>gi|330974049|gb|EGH74115.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. aceris str. M302273PT]
          Length = 320

 Score =  116 bits (290), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 56/277 (20%), Positives = 104/277 (37%), Gaps = 32/277 (11%)

Query: 84  WGSLA-VNSRISFESYFDQIIRKSGDF---DYRKITTKHI---RSGVESRKHTPSSAIQF 136
           + +L    +R ++++         G     D+R +T  H+   R+ +E R    ++  + 
Sbjct: 33  FANLDNPRTRRAYQNDLTDFSSFIGLASADDFRLVTRSHVLAWRADLEHRGLAGATIRRK 92

Query: 137 LTSMRVLFKWAVRQE-YVAINPCLSVERPKRKT-EGIRPWTKED-----MQQFKSFWSEG 189
           L ++  LF   +        NP   V+RPK ++ EG  P   +      +        +G
Sbjct: 93  LAALASLFDHLLENNAIAGGNPVHGVKRPKIESNEGKTPALGDHQAKALLDAPDESTLKG 152

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKT-QKTGTIITVELPDG------ 240
            + R     LLY GLR  ++ +  V  +  +  I  +K   K G +  + L         
Sbjct: 153 LRDRAILAVLLYHGLRREEAAQLQVSDIQERRGIQHLKIHGKGGKVRYLPLHPVAAGRIH 212

Query: 241 --FMKLLAMTPIGKETFFINNDKQK----MNATQFSIWFKAKATKAGV---NKSAHGVRK 291
               +        K   FI    +     ++A       +A A KAG+       HG+R 
Sbjct: 213 LYLERSGHHLDDKKVPLFIPLRGKPTGAGVSANGIYTVVEAYAKKAGIEVAGLGVHGLRA 272

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
            +AT + D  A   ++ A  G   +   + Y +  +R
Sbjct: 273 TAATNALDHEADIAKVQAWLGHANISTTKIYDRRENR 309


>gi|255292018|dbj|BAH90501.1| tyrosine recombinase [uncultured bacterium]
 gi|255292879|dbj|BAH89979.1| tyrosine recombinase [uncultured bacterium]
 gi|255292943|dbj|BAH90041.1| tyrosine recombinase [uncultured bacterium]
 gi|255293213|dbj|BAH90303.1| tyrosine recombinase [uncultured bacterium]
          Length = 399

 Score =  116 bits (290), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 56/321 (17%), Positives = 108/321 (33%), Gaps = 25/321 (7%)

Query: 44  IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-I 102
           +     A            +  +K  T+K L +++ +         +++  ++S  D+ I
Sbjct: 73  LAQEWLAQVRRGGDPSADKAVARKAPTVKELCTKFMEDYSKLRNKPSTQEGYQSVIDRNI 132

Query: 103 IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA--INPCLS 160
           +   G    + +    +   ++   H P+ A +  + MR +F  A    Y     NPC  
Sbjct: 133 VPMIGRMKVQDVKRPDVAGMMKKMTHKPADANRTFSVMRRMFNLAEVWGYRPDGTNPCRH 192

Query: 161 VERPKRKTEGIRPWTKEDM-------QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG 213
           V       +     + EDM       ++ ++   E     LA         R  +     
Sbjct: 193 VPMFP-NGKATHLISDEDMGKLFRHLERLEAEGLENYVIPLAIRLQFEFAGRRGEIVTLQ 251

Query: 214 VQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI----NNDKQKMNAT 267
              +   N        KTG +    + +   +LL+  P   +  ++    N+  Q +   
Sbjct: 252 WDWVDFENRRVVWPDSKTGGMSK-PMSEEAYRLLSTAPRQDDCPYVLPSPNHPGQHLTTG 310

Query: 268 QFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           ++   +      AG      HG+R  SAT  A++G      MA    KTV     Y    
Sbjct: 311 EYYNGWSRALKAAGAAHVGTHGIRHRSATDIANSGIPVKVGMALTAHKTVAMFMRYVHTE 370

Query: 327 DRIRLGIKNSRRISSVVDSDD 347
           D         R+ + +V +  
Sbjct: 371 D------DPVRKAAELVANRR 385


>gi|121533770|ref|ZP_01665597.1| tyrosine recombinase XerC [Thermosinus carboxydivorans Nor1]
 gi|121307761|gb|EAX48676.1| tyrosine recombinase XerC [Thermosinus carboxydivorans Nor1]
          Length = 302

 Score =  116 bits (290), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 40/287 (13%), Positives = 88/287 (30%), Gaps = 28/287 (9%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQ-----IIRKSGDFDYRKITTKHIRSGVESRKH 128
           I ++ +      + + ++  S+    +      +     +  +  IT   IR+ +   K 
Sbjct: 8   IEQFFRYLRLEKNASPHTVKSYREDIEHFWEFALQHNGSEVLFAAITPMLIRAYLARLKA 67

Query: 129 ---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
                ++  + + ++R  +++  R+  V  NP   V  PK + +      + ++ +    
Sbjct: 68  DDYARTTIARRIAALRSFYRFLCREGLVDTNPFKLVHTPKIEKKLPVFLDEREVAELLEL 127

Query: 186 WS---EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGTIITVELPDGF 241
            +    G +     E L  +G+R ++        +   + F I   K      V +    
Sbjct: 128 PADDVLGRRDAAILELLYATGIRVAELTGLKTSDVDLVSRFVIVCGKGAKERIVPIGRTA 187

Query: 242 MKLLAM-------------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286
              L                    +  FIN+    +                 V K  S 
Sbjct: 188 AAALERYLADARPRLYSKWRKEQHQFLFINSKGGPLTDRSVRRIIDKYIANLAVAKKVSP 247

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           H +R   AT   + GA    +    G   +   + YT         +
Sbjct: 248 HTIRHTFATHMLNNGADLRSVQEMLGHVNLSTTQLYTHVTKERLKAV 294


>gi|299821501|ref|ZP_07053389.1| integrase/recombinase [Listeria grayi DSM 20601]
 gi|299817166|gb|EFI84402.1| integrase/recombinase [Listeria grayi DSM 20601]
          Length = 314

 Score =  116 bits (290), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 38/269 (14%), Positives = 100/269 (37%), Gaps = 18/269 (6%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQI----IRKSGDFDYRKITTKHIRSGVE--SRK 127
           LI ++ +S    ++   +   +   F+ +    ++   D    +++ + +   V    + 
Sbjct: 26  LIEDFIRSRRLKNVRETTIKYYLDIFNVLNRDKVKVDLDKPLSELSQRDLEDIVMYWKKS 85

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              +S    + + +  + +   ++Y+ +NP       +++ E  +     ++++  +++ 
Sbjct: 86  LKVTSINSKIKAFKAFYNYLFSKKYIKVNPVADFSLLRQREEIRKTLEANEIKKIANYYK 145

Query: 188 E-----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
                   +  + F+ LL +GLR S++    V  + ++   +   K  T   V +     
Sbjct: 146 RKETFTAFRDLVLFQLLLDTGLRISEAINIKVPDIHDDYIVVVETKNLTQRIVYISKSMK 205

Query: 243 KLLA-----MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSAT 295
           + L            +  FI  D  K     F    +       + K  S H  R+  A 
Sbjct: 206 QKLNSYISIRGECNHQYLFIIQDGTKYTKYSFQESLRNAGRMCQLRKQVSPHVCRRTYAK 265

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTK 324
            +  +G  A  L +  G  +++  + Y +
Sbjct: 266 NAILSGMDAFSLASLLGHSSLEVTKRYVQ 294


>gi|313674236|ref|YP_004052232.1| integrase family protein [Marivirga tractuosa DSM 4126]
 gi|312940934|gb|ADR20124.1| integrase family protein [Marivirga tractuosa DSM 4126]
          Length = 379

 Score =  116 bits (290), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 49/280 (17%), Positives = 103/280 (36%), Gaps = 27/280 (9%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI---TTKHIRSGVESRKHTPSSAI 134
           Y    +    A ++  S+ + F++ I         ++     K     +  +K++ SS  
Sbjct: 111 YLNELNQRRYACSTVKSYIACFERFINYYSKKKMTELGEEEIKKFIQNLIDKKYSDSSVN 170

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVE--RPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
             + +++  +      E V   P    +  RP+++       +KE++ Q  +      + 
Sbjct: 171 MHINAIKFYY------EVVEKMPNRFYDFARPQKEERLPEVLSKEEILQMIANC-HNLKH 223

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI--KTQK-TGTIITV---ELPDGFMKLLA 246
           +     L  +GLR S+     +  + +   SI  +  K     I++    + D       
Sbjct: 224 KCIVSLLYSAGLRRSELLNLKLTDIDSGRMSILIRQAKGKKDRISILGNTILDDLRAYFK 283

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATA 304
                K   F     Q+ ++T  S   K  A +AG+ K  + H +R   AT   +AG   
Sbjct: 284 SY-RPKVFLFEGAQGQQYSSTSVSKIVKKTAQRAGIKKRVTPHMLRHSFATHLLEAGTDL 342

Query: 305 HELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
             + +  G    +  E YT       + +   ++I + +D
Sbjct: 343 RYIQSLLGHNNSNTTEIYTH------VAVNAFKKIRNPLD 376


>gi|118473200|ref|YP_886852.1| site-specific tyrosine recombinase XerC [Mycobacterium smegmatis
           str. MC2 155]
 gi|166918888|sp|A0QVB4|XERC_MYCS2 RecName: Full=Tyrosine recombinase xerC
 gi|118174487|gb|ABK75383.1| tyrosine recombinase XerC [Mycobacterium smegmatis str. MC2 155]
          Length = 300

 Score =  116 bits (290), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 40/272 (14%), Positives = 101/272 (37%), Gaps = 29/272 (10%)

Query: 88  AVNSRISFE----SYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT---PSSAIQFLTSM 140
           + ++R ++     + FD + +++G+    +++   +RS +  +  +    ++  +  +S+
Sbjct: 19  SDHTRRAYRGDLTALFDFVEQRTGERSLARVSLPLLRSWLAEQSASGAARTTLARRTSSV 78

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED-MQQFKSF-------WSEGSQP 192
           +    WA+R+  + ++P   ++ PK +        ++  +    +             + 
Sbjct: 79  KTFCAWALRRGLIGVDPAARLQVPKARRTLPAVLRRDQALDALDAVNSGAQEGDPIALRD 138

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMT--- 248
           RL  E L  +G+R S+ C   +  +  +   ++   K     TV   +     L      
Sbjct: 139 RLIVELLYATGIRVSELCGLDIDDIDTSRRVVRVLGKGNKQRTVPFGEPAHAALTAWLTE 198

Query: 249 -------PIGKETFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSAHGVRKFSATISAD 299
                  P       +    ++++  Q          A     +   HG+R  +AT   +
Sbjct: 199 GRPQLSIPESGPALLLGARGRRLDPRQARTVVHQTVSAVNGAPDIGPHGLRHSAATHLLE 258

Query: 300 AGATAHELMATYGWKTVDQAETYTK-GADRIR 330
            GA    +    G  ++   + YT    +R+R
Sbjct: 259 GGADLRIVQELLGHTSLATTQLYTHVTVERLR 290


>gi|227510442|ref|ZP_03940491.1| site-specific recombinase XerD [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
 gi|227190094|gb|EEI70161.1| site-specific recombinase XerD [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
          Length = 331

 Score =  116 bits (290), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 39/281 (13%), Positives = 97/281 (34%), Gaps = 31/281 (11%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--------FDYRKITTKHIRSGV 123
            W +  Y +S      + ++  ++++   + ++   +             +  +   +G+
Sbjct: 29  DWFLK-YLRSER--HYSEDTVQAYQNDLTEFLKFLNETSKDHTSLIKIDSLDVESYLTGL 85

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
             +K+  +S  Q ++++R  + + ++ E +  NP   V    +     R +   +MQ   
Sbjct: 86  YDKKYARNSIAQKVSALRSFYSFLIKNEVIKNNPFEYVHLKNQNRRLPRFFYPTEMQALF 145

Query: 184 SFWSEGSQPRL-----AFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVE- 236
           S   +G +          E    +G+R S+     ++ +   N   + T K      +  
Sbjct: 146 SAAKKGERKLAFRNSAILEVFYSTGIRVSEGVTIQLKDIDLENQLILVTGKGRKQRYLPF 205

Query: 237 -----------LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--N 283
                      L +    L+       +  FIN+  + + +            ++ +  N
Sbjct: 206 GKPAKQAVENYLKESREPLMTKYHQKHDYLFINHFGKPLTSRGIEYILDGIIKQSSLTTN 265

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              H +R   AT   + GA    +    G  ++   + YT 
Sbjct: 266 IHPHMLRHTFATEMLNNGADMRSVQELLGHSSLSTTQIYTH 306


>gi|269958529|ref|YP_003328316.1| site-specific tyrosine recombinase [Anaplasma centrale str. Israel]
 gi|269848358|gb|ACZ49002.1| site-specific tyrosine recombinase [Anaplasma centrale str. Israel]
          Length = 312

 Score =  116 bits (290), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 37/266 (13%), Positives = 92/266 (34%), Gaps = 30/266 (11%)

Query: 88  AVNSRISFESYFDQI---------IRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQ 135
           + N+  ++E                R +G  D +++ +  +RS +  R       SS  +
Sbjct: 24  SPNTVAAYERDIMDFYKFICGEPCERVAGLKDIQELRSAELRSWLADRFKQGKQSSSNAR 83

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KSFWSEGSQ 191
            +  +R  F++  R+  +  +   ++ RP  +    +   +  +++     ++     ++
Sbjct: 84  AVAVVRSFFRYLHRKCGMNGSVVSNISRPIVRKSLPKVLEESQIRKVMGEREAPHWTHTR 143

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA----- 246
                  L   GLR S++       L  +   +   K      + +     + +      
Sbjct: 144 DLAVSALLYGCGLRISEAVNVKFCDLGQDGLRV-LGKGSKERVIPVLPWVRRAIDEYVAN 202

Query: 247 ------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISA 298
                  +  G E  F+     +++ T F+   +    + G+ ++   H +R   AT   
Sbjct: 203 CPHLRVHSASGTEYIFVGLRGGRLSRTYFAHRMRKLRRRVGLPETTTPHTLRHSFATHLF 262

Query: 299 DAGATAHELMATYGWKTVDQAETYTK 324
             GA    +    G  ++   + YT 
Sbjct: 263 LEGADIRVVQELLGHASLATTQIYTH 288


>gi|238798591|ref|ZP_04642067.1| Tyrosine recombinase [Yersinia mollaretii ATCC 43969]
 gi|238717547|gb|EEQ09387.1| Tyrosine recombinase [Yersinia mollaretii ATCC 43969]
          Length = 263

 Score =  116 bits (290), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 40/240 (16%), Positives = 82/240 (34%), Gaps = 16/240 (6%)

Query: 101 QIIRKSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINP 157
           ++  + G   ++ +    +RS V   K      SS    L+++R    W V Q  +  NP
Sbjct: 2   ELGEQMGLAHWQTLDAAQVRSLVSRSKRAGLHASSLALRLSALRSFLNWLVSQGVLQANP 61

Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGV 214
              V  P+      +    +++ +            + R   E +  +GLR S+      
Sbjct: 62  AKGVSTPRSGRHLPKNIDVDEVDKLLDIDLNDPLAVRDRAMLEVMYGAGLRLSELVGMNC 121

Query: 215 QHLQNNIFSIKTQKTGT--------IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA 266
           +H+      +     G+           V   + ++ L  +     +  F+ N  ++++A
Sbjct: 122 KHVDLVGGEVWVMGKGSKERKVPIGRTAVTWLNHWLALRELFEPQDDAIFLANTGKRISA 181

Query: 267 TQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
                 F     K GV  +   H +R   AT   ++      +    G   +   + YT 
Sbjct: 182 RNVQKRFAEWGVKQGVSSHIHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTH 241


>gi|329889983|ref|ZP_08268326.1| tyrosine recombinase xerD [Brevundimonas diminuta ATCC 11568]
 gi|328845284|gb|EGF94848.1| tyrosine recombinase xerD [Brevundimonas diminuta ATCC 11568]
          Length = 300

 Score =  116 bits (290), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 42/289 (14%), Positives = 102/289 (35%), Gaps = 34/289 (11%)

Query: 85  GSLAVNSRISFESYF----DQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSM 140
              + ++  ++          +    G     +   +   + +  R  + ++A +   S+
Sbjct: 16  RDASPHTLAAYGRDLADAQTWLNDVGGLMGAPQEALEAWFADLSRRGLSAATAARRRASV 75

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-----SEGSQPRLA 195
           R  +++A+ + + A +P   ++ PK+     +  ++++++   +       + G +  + 
Sbjct: 76  RQFYRFALGEGWRADDPSRRLDAPKQGRSLPKTLSRDEIEALLTAAGAADSTAGLRLIVL 135

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKLLAMTP----- 249
            E    SGLR S+     V+ ++ +  + I   K G      L     + +         
Sbjct: 136 VEMAYASGLRVSELLALKVEAVRRDPAYLIVRGKGGKERLAPLNMPAREAIKAWLNARDA 195

Query: 250 -----IGKETFFINNDKQ--KMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISAD 299
                     +   +  +   +   +F+      A  AG++    S H +R   AT   +
Sbjct: 196 ARKPNTPDSAWLFPSHGKSGHLTPRRFAQLLDQAAVMAGIDPARVSPHVLRHAFATHLLE 255

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
            GA    +    G   +   + YT  A           R+S VV ++ P
Sbjct: 256 GGADLRVVQTLLGHADISTTQIYTHVA---------VDRLSQVVHANHP 295


>gi|310765754|gb|ADP10704.1| site-specific tyrosine recombinase XerC [Erwinia sp. Ejp617]
          Length = 345

 Score =  116 bits (290), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 55/304 (18%), Positives = 108/304 (35%), Gaps = 31/304 (10%)

Query: 64  PRKKPTTLKWLI---SEYRKSAHWGS--LAVNSRISFESYF---DQIIRKSGDFDYRKIT 115
           P   P +L  L+    ++R+  +W    L V +   +       ++ I  + D     + 
Sbjct: 24  PAHDPKSLYALLLRFVKWRRERNWSENTLKVQTHHDYRFICWASERGIHHAADVTRPVLE 83

Query: 116 T--KHIRSGVESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
              +H+    +      +P +    L  ++V F+W  +Q  +  NP   +E P+ +    
Sbjct: 84  RWQRHLYHYRKGNGEPLSPRTQRTALQPLQVWFRWLAKQNLILANPAADLELPRLEKHLP 143

Query: 172 RP-WTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGV--QHLQNNIFSI 224
           R   + E ++   +        G + R   E L  +G+R  +  R           I +I
Sbjct: 144 RTILSVEQVEDIVNRCDLNTLQGMRDRALLELLWSTGIRRGEVARLESWSADFSRKILTI 203

Query: 225 KTQKTGTIITVELPDGFMKLLA----------MTPIGKETFFINNDK-QKMNATQFSIWF 273
              K      + + +  +  L           +   G +  F+  D    + A   +   
Sbjct: 204 VQGKGKQDRVIPVGERALWWLRHYLHEVRPEIVAVAGCKALFVAMDGVAGLTANGITHAV 263

Query: 274 KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
                 AG+ K S H  R   AT   + GA    + A  G ++V+  + YT+ + R    
Sbjct: 264 VPYLRAAGIEKGSCHLFRHAMATQMLENGADLRWIQAMLGHRSVESTQIYTQVSIRALQA 323

Query: 333 IKNS 336
           +  S
Sbjct: 324 VHAS 327


>gi|241896013|ref|ZP_04783309.1| integrase/recombinase [Weissella paramesenteroides ATCC 33313]
 gi|241870744|gb|EER74495.1| integrase/recombinase [Weissella paramesenteroides ATCC 33313]
          Length = 308

 Score =  116 bits (290), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 40/282 (14%), Positives = 94/282 (33%), Gaps = 31/282 (10%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQII---------RKSGDFDYRKITTKHIRSG 122
           K L  +Y +       ++ ++ ++E    + +         +     +      +   S 
Sbjct: 10  KQLFLDYLRIER--QYSLETQKAYEGDIAEFLTFLSGTQATKSIVLSNITSFDVRVFLSE 67

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           +  +     +  + ++S+R  +++ +  E VA NP + +   K      R + ++++ + 
Sbjct: 68  LYEKGDGSRTIARKVSSLRSFYRFLINNEMVAENPFVGIVLKKPGQHLPRYFYQKELTKM 127

Query: 183 KSFW-----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-- 235
                    + G +  L  E L  +G R S+     +Q++ ++   +     G    +  
Sbjct: 128 FDVVMTDQSALGLRNHLLLEMLYGTGARVSEIANMTLQNVDSHARVVTITGKGNKTRIVP 187

Query: 236 ---ELPDGFMKLLAM--------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284
                 D   K L                  F+N     +         K    K+G+ +
Sbjct: 188 FGRYAADALAKYLKTGRPVLASKQADTSNKLFLNQRGAPVTTAGIEYILKQIGKKSGLTQ 247

Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             +AH  R   AT   +  A    +    G  ++   + YT 
Sbjct: 248 EVTAHMFRHTFATDLLNNQADLRTVQQLLGHSSLSTTQIYTH 289


>gi|170734437|ref|YP_001766384.1| site-specific tyrosine recombinase XerC [Burkholderia cenocepacia
           MC0-3]
 gi|169817679|gb|ACA92262.1| tyrosine recombinase XerC [Burkholderia cenocepacia MC0-3]
          Length = 306

 Score =  116 bits (290), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 45/279 (16%), Positives = 91/279 (32%), Gaps = 30/279 (10%)

Query: 75  ISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV---ESRKHTP 130
           I+ Y  +  H   L+ ++  ++    D++ + +       +T   +R  V    +   + 
Sbjct: 6   IAAYLSNLKHVRQLSEHTLRAYTHELDELKKLAAGRPLEALTAADMRGAVVRGHAAGLSA 65

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFW 186
            S    L++ R  ++W  ++  +  NP   V  PKR+    +  + +D    M    +  
Sbjct: 66  RSISHRLSAWRAFYRWFAQRVEMPANPVAGVRAPKREKSLPKALSVDDAVALMDAPLAGT 125

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRA-------------GVQHLQNNIFSIKTQKT---- 229
           +EG +     E    SGLR ++                 G   L     +++ +      
Sbjct: 126 TEGIRDHAILELFYSSGLRLAELVGLDVRYTQADGYRSAGWLDLAEAEVTVRGKGNKERK 185

Query: 230 ---GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284
              G+     L                  F++    +M+        K  A  AG+    
Sbjct: 186 VPVGSKAIDALNAWLAVRGEFVKHDPHPLFVSVRGNRMSPGVVRERVKRAALAAGIPANV 245

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
             H +R   AT    +      +    G  +V   + YT
Sbjct: 246 HPHVLRHSFATHVLQSSGDLRAVQELLGHASVAATQIYT 284


>gi|329114345|ref|ZP_08243107.1| Tyrosine recombinase XerD [Acetobacter pomorum DM001]
 gi|326696421|gb|EGE48100.1| Tyrosine recombinase XerD [Acetobacter pomorum DM001]
          Length = 306

 Score =  116 bits (290), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 47/284 (16%), Positives = 100/284 (35%), Gaps = 27/284 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESR---KHTPSSAIQFLTS 139
            + A N+  ++E+                +  TT+ +++ + +         +  + L+ 
Sbjct: 17  RAAAPNTLAAYEADLTSCAESLAREGQTLQTATTEGLQNWMAALVGSGQARRTVARRLSC 76

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----------- 188
           +R  + + +R+   A NP   ++ PK +T   R  ++ ++    +  +E           
Sbjct: 77  IRQFYLFLLREGMRADNPAAHLDSPKPRTPLPRFLSESEVLALLNACAEPDGASLPKKRR 136

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHL-QNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
           G   + A E L  SGLR S+      + +  +    +   K G    V L D   +    
Sbjct: 137 GILAKAALELLYASGLRISELLALPRKAIAGDQRMIMVRGKGGRERLVPLSDSAREAAQA 196

Query: 248 TPIGKETF---FINNDK---QKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISA 298
                      F+   +   + M    F       A +A ++    S H +R   AT   
Sbjct: 197 LLEVDAHLESAFLFPGRDPAKPMTRQAFDRILHTVAIRAEIDPARLSPHVLRHSFATHLL 256

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSRRISS 341
             GA    L    G   +   + YT    +R++  ++    +++
Sbjct: 257 AHGADLRALQMLLGHADIATTQIYTHVQTERLQKAVQAHHPLAA 300


>gi|297183673|gb|ADI19798.1| site-specific recombinase xerd [uncultured alpha proteobacterium
           EB000_37G09]
          Length = 302

 Score =  116 bits (290), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 52/280 (18%), Positives = 98/280 (35%), Gaps = 23/280 (8%)

Query: 74  LISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHT 129
           LI+ +  + A    ++ N+   +++    +        +  +T   IR  V+        
Sbjct: 9   LITHFLSALAAERGVSENTLFGYKNDLMALHDSMA-VSFVVMTADDIRQSVQKFYIEGLA 67

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
             +  + L+++R    W V       NP L ++ PK      +   + D+    +  S+ 
Sbjct: 68  ARTVSRRLSAVRQFAGWMVSDHIRQDNPSLFLDNPKLPDPLPKSLNEADVSSLITACSKL 127

Query: 190 SQPR-----LAFEFLLYSGLRCSDSCRAGVQHL-QNNIFSIKTQKTGTIITVELPDGFMK 243
             P         E +  +GLR S+     +Q    +    +   K G    V L    + 
Sbjct: 128 EPPYDLLMQAGLELMYSAGLRISELLSLRLQDFTADKDMLLIRGKGGRERMVPLTAIAIA 187

Query: 244 LLAM--------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKF 292
                        P  +    +    Q+M   +FS+  K  A  A +++   SAH +R  
Sbjct: 188 TARRWRDARDADGPDAETDQLLGYRSQEMTRQKFSLLLKQVARHADLDERKVSAHVLRHS 247

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
            AT   + GA    L    G   +   + YT+   + RL 
Sbjct: 248 FATHLLNRGADLRSLQMLLGHADIATTQIYTRTR-QDRLA 286


>gi|329724319|gb|EGG60831.1| tyrosine recombinase XerC [Staphylococcus epidermidis VCU144]
          Length = 296

 Score =  116 bits (290), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 34/265 (12%), Positives = 94/265 (35%), Gaps = 20/265 (7%)

Query: 85  GSLAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
            + +  +  S+     Q              +     ++  + + S +   ++  + +++
Sbjct: 16  RNFSEYTLKSYHDDLVQFNNFLEREHLQLETFEYKDARNYLAFLYSNQLKRTTVSRKIST 75

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KSFWSEGSQPRLA 195
           +R  +++ + Q+   INP + +  PK++    + + +E+M+      +    +G + ++ 
Sbjct: 76  LRTFYEFWMTQDNSIINPFVQLVHPKKEKYLPQFFYEEEMEALFQTVEHDNKKGIRDKVI 135

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE--------LPDGFMKLLA 246
            E L  +G+R S+     ++ +  N+  +K   K      +         +     +   
Sbjct: 136 IELLYATGIRVSELINIKLKDIDMNLPGVKVLGKGNKERFIPFGEFCRQSIERYLEEFQP 195

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATK-AGV-NKSAHGVRKFSATISADAGATA 304
                 +   +N     +              + AGV +   H +R   AT   + GA  
Sbjct: 196 KQLANHDYLIVNMKGDPITERGVRYVLNDVVKRTAGVNDIHPHKLRHTFATHLLNQGADL 255

Query: 305 HELMATYGWKTVDQAETYTKGADRI 329
             + +  G   +     YT  +++ 
Sbjct: 256 RTVQSLLGHANLSTTGRYTHVSNQQ 280


>gi|15640159|ref|NP_229786.1| site-specific tyrosine recombinase XerC [Vibrio cholerae O1 biovar
           El Tor str. N16961]
 gi|121587730|ref|ZP_01677491.1| tyrosine recombinase XerC [Vibrio cholerae 2740-80]
 gi|147673673|ref|YP_001218291.1| site-specific tyrosine recombinase XerC [Vibrio cholerae O395]
 gi|153818950|ref|ZP_01971617.1| tyrosine recombinase XerC [Vibrio cholerae NCTC 8457]
 gi|153822328|ref|ZP_01974995.1| tyrosine recombinase XerC [Vibrio cholerae B33]
 gi|227080364|ref|YP_002808915.1| integrase/recombinase XerC [Vibrio cholerae M66-2]
 gi|229508406|ref|ZP_04397910.1| tyrosine recombinase XerC [Vibrio cholerae BX 330286]
 gi|229508913|ref|ZP_04398403.1| tyrosine recombinase XerC [Vibrio cholerae B33]
 gi|229517027|ref|ZP_04406473.1| tyrosine recombinase XerC [Vibrio cholerae RC9]
 gi|229606679|ref|YP_002877327.1| site-specific tyrosine recombinase XerC [Vibrio cholerae MJ-1236]
 gi|254851512|ref|ZP_05240862.1| tyrosine recombinase xerC [Vibrio cholerae MO10]
 gi|255743919|ref|ZP_05417874.1| tyrosine recombinase XerC [Vibrio cholera CIRS 101]
 gi|262151158|ref|ZP_06028297.1| tyrosine recombinase XerC [Vibrio cholerae INDRE 91/1]
 gi|262167027|ref|ZP_06034744.1| tyrosine recombinase XerC [Vibrio cholerae RC27]
 gi|298501104|ref|ZP_07010904.1| tyrosine recombinase XerC [Vibrio cholerae MAK 757]
 gi|34223078|sp|Q9KVL4|XERC_VIBCH RecName: Full=Tyrosine recombinase xerC
 gi|172047518|sp|A5F4I4|XERC_VIBC3 RecName: Full=Tyrosine recombinase xerC
 gi|254799360|sp|C3LPX0|XERC_VIBCM RecName: Full=Tyrosine recombinase xerC
 gi|9654528|gb|AAF93305.1| integrase/recombinase XerC [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121548029|gb|EAX58107.1| tyrosine recombinase XerC [Vibrio cholerae 2740-80]
 gi|126510512|gb|EAZ73106.1| tyrosine recombinase XerC [Vibrio cholerae NCTC 8457]
 gi|126520154|gb|EAZ77377.1| tyrosine recombinase XerC [Vibrio cholerae B33]
 gi|146315556|gb|ABQ20095.1| tyrosine recombinase XerC [Vibrio cholerae O395]
 gi|227008252|gb|ACP04464.1| integrase/recombinase XerC [Vibrio cholerae M66-2]
 gi|227011870|gb|ACP08080.1| integrase/recombinase XerC [Vibrio cholerae O395]
 gi|229346090|gb|EEO11062.1| tyrosine recombinase XerC [Vibrio cholerae RC9]
 gi|229354030|gb|EEO18963.1| tyrosine recombinase XerC [Vibrio cholerae B33]
 gi|229354679|gb|EEO19601.1| tyrosine recombinase XerC [Vibrio cholerae BX 330286]
 gi|229369334|gb|ACQ59757.1| tyrosine recombinase XerC [Vibrio cholerae MJ-1236]
 gi|254847217|gb|EET25631.1| tyrosine recombinase xerC [Vibrio cholerae MO10]
 gi|255738402|gb|EET93792.1| tyrosine recombinase XerC [Vibrio cholera CIRS 101]
 gi|262024545|gb|EEY43229.1| tyrosine recombinase XerC [Vibrio cholerae RC27]
 gi|262031052|gb|EEY49677.1| tyrosine recombinase XerC [Vibrio cholerae INDRE 91/1]
 gi|297540138|gb|EFH76199.1| tyrosine recombinase XerC [Vibrio cholerae MAK 757]
          Length = 311

 Score =  116 bits (290), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 37/278 (13%), Positives = 94/278 (33%), Gaps = 21/278 (7%)

Query: 68  PTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSGV 123
           P  L   +  +    H    L++ ++ +++   + + +   + G   + ++ +  +R  V
Sbjct: 10  PDALAQPLERFYAYLHTEKGLSLYTQRNYKQQLETMTQYLVQVGLTHWTQLDSAWVRQLV 69

Query: 124 ESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
              K      SS    L+S+R    + + +  +  NP   V  P+++    +    ++M 
Sbjct: 70  MQGKRQGMKASSIATRLSSLRSFLDFLILRGELQANPAKGVSAPRKQRTLPKNLDVDEMA 129

Query: 181 QFKSFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---IT 234
           Q            + R   E +  +GLR ++     ++ +  +   I+    G     + 
Sbjct: 130 QLLEVTDDDPLSIRDRAIMELMYGAGLRLAELVSIDIKDVNLSEGEIRVIGKGNKERKVW 189

Query: 235 V------ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286
                   +         +    +   F++    +++             K  V  + S 
Sbjct: 190 FAGQAQEWVGKWLKLRSQLADSAETALFVSKLGTRISHRSVQKRMAEWGQKQAVASHISP 249

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           H +R   AT   ++      +    G + +   + YT 
Sbjct: 250 HKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTH 287


>gi|220933239|ref|YP_002512138.1| tyrosine recombinase XerC [Thioalkalivibrio sp. HL-EbGR7]
 gi|219994549|gb|ACL71151.1| tyrosine recombinase XerC [Thioalkalivibrio sp. HL-EbGR7]
          Length = 298

 Score =  116 bits (290), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 36/269 (13%), Positives = 88/269 (32%), Gaps = 19/269 (7%)

Query: 74  LISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV---ESRKHT 129
            I  Y +        + ++  ++     ++    GD D+  +    IR+ V     +   
Sbjct: 8   WIDRYLRHLREERRYSPHTVENYARDLRRLCEAVGD-DWSSVKVHDIRALVAKEHRQGAG 66

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
             +  + L+++R  F + +R+     NP L V  PK   +       + + +      + 
Sbjct: 67  SKTLQRLLSAIRGFFNYLIREGVADANPALDVRAPKSGRKLPGVLDVDQVARLLDLPGDE 126

Query: 190 S---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFMKLL 245
           +   + R   E    SGLR ++     +  +      ++    G     + +    +  L
Sbjct: 127 ALVVRDRAILELFYSSGLRLAELVGLDLVDVDLGDAQLRVTGKGRKARDLPIGRHAVAAL 186

Query: 246 AM--------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSAT 295
                         ++  F+    +++ A          A   G+++    H +R   A+
Sbjct: 187 KAWLPMRAGLAAADEQALFVGQRGRRLGARAVQTRLARHAGLQGLDRRVHPHLLRHSFAS 246

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTK 324
              ++      +    G   +   + YT 
Sbjct: 247 HLLESSGDLRAVQELLGHADISTTQVYTH 275


>gi|37525317|ref|NP_928661.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|37527576|ref|NP_930920.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|36784744|emb|CAE13652.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
 gi|36787011|emb|CAE16085.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 376

 Score =  116 bits (290), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 54/305 (17%), Positives = 108/305 (35%), Gaps = 32/305 (10%)

Query: 64  PRKKPTTLKWLI---SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT---K 117
           P   P +L  L+     +R+  +W    +  +     +F       G +    IT    +
Sbjct: 24  PAHDPKSLYALLLRFVAWRQERNWSETTLKVQTHHTYHFILWATDRGLYYAADITRPILE 83

Query: 118 HIRSGVESRKHT------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
             +  +   + T        +    L  ++V FKW  +Q  +  NP   +E P+ +    
Sbjct: 84  RYQRYLYQYRKTNGEPLSIRTQRTQLQPLQVWFKWLTKQNLILANPAADIELPREEKRLP 143

Query: 172 R-PWTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSI 224
           R   + ++++   S        G++ R   E L  +G+R S++ R  +  +  +    +I
Sbjct: 144 RYILSIDEIEHILSLPDPNTLQGARDRALMELLWSTGIRRSEAARLDIYSIDGSRKTVTI 203

Query: 225 KTQKTGTIITVELPDGFMKLLA-----------MTPIGKETFFINNDKQKMNATQFSIWF 273
           +  K      + L +  +  L            +TP  +  F   +    +     +   
Sbjct: 204 RQGKGNKDRVLPLGERALNWLQFYQQQVRPQLLVTPDIQSLFVAMDGLDGLQPNGITNAV 263

Query: 274 KAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
                 AG+ K    H  R   AT   + GA    + A  G  +V+  + YT+ + R   
Sbjct: 264 SGYIRAAGIEKKGACHLFRHAMATQMLENGADLRWIQAMLGHASVESTQVYTQVSIRALQ 323

Query: 332 GIKNS 336
            +  S
Sbjct: 324 AVHAS 328


>gi|319791651|ref|YP_004153291.1| integrase family protein [Variovorax paradoxus EPS]
 gi|315594114|gb|ADU35180.1| integrase family protein [Variovorax paradoxus EPS]
          Length = 317

 Score =  115 bits (289), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 43/280 (15%), Positives = 87/280 (31%), Gaps = 29/280 (10%)

Query: 73  WLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESR--- 126
             I++Y +       LA  +   +  +   +   + +      ++ T HIR  +      
Sbjct: 14  DWIAKYLEHVRVERRLAARTVELYAFHLQALRENAAEANLPLDRVQTAHIRRWMAKLHSA 73

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
              P      L+  R  ++W   +  +  NP   V  PK      +    +D  Q     
Sbjct: 74  GREPRGIALVLSCWRSFYRWLGHEGLIGFNPVQDVHAPKAGRPLPKALGVDDAVQLAELH 133

Query: 187 SE------GSQPRLAFEFLLYSGLRCSDSCR---------AGVQHLQNNIFSIKTQKTGT 231
            E       ++ R   E L   GLR S+             G   L     ++   K   
Sbjct: 134 DEDADPWIEARDRAIVEILYGCGLRVSELTGLDAQASNTALGWVDLDAKEANV-LGKGSK 192

Query: 232 IITVELPDGFMKLLA-----MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NK 284
              V +     + L               F+++   +M++       + ++ KAG+    
Sbjct: 193 RRIVPVGSKAAEALQEWLDVRGDRSVPALFVSSKGARMSSQAVWKLLRERSLKAGLAAPV 252

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             H +R   A+    + +    +    G   +   + YT+
Sbjct: 253 HPHMLRHSFASHVLQSSSDLRAVQELLGHANIATTQIYTR 292


>gi|309777265|ref|ZP_07672227.1| tyrosine recombinase XerC [Erysipelotrichaceae bacterium 3_1_53]
 gi|308914945|gb|EFP60723.1| tyrosine recombinase XerC [Erysipelotrichaceae bacterium 3_1_53]
          Length = 356

 Score =  115 bits (289), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 51/344 (14%), Positives = 125/344 (36%), Gaps = 23/344 (6%)

Query: 6   RLPPFVTKERTRHGKIIYYFRKGHGR--RIRLPYPHESTFIPAYMSALTGSTPKREYINS 63
           R  P+V          + Y RK   R  + ++   +E+  +  + S    +     +   
Sbjct: 24  RRKPWVACV------TVAYQRKDGARHQKRKIIGYYETEEMAEF-SLWNYNKNPVLFAEI 76

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
            +    T + +  E+  S  + +++  +   +++ + +      +     +   H +  +
Sbjct: 77  EKLGTITFENVYMEW-SSTKYKNISQTAINGYKAAYAR-CSSIWNVRMTDLKAMHFQRIM 134

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV--ERPKRKTEGIRPWTKEDMQQ 181
           +    + SS ++  + M ++ ++AV+ + +  N    V   R +   E  +P+T+ +++Q
Sbjct: 135 DESTLSLSSDLKLRSLMMLVCEYAVQNDIIQKNYAKYVIINRKEDHPEIHKPFTEWEIEQ 194

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-KT--GTIITVELP 238
                +           ++Y+G R  +      + +     +I+   KT  G    V + 
Sbjct: 195 LFDHDNIPFVD--TVLIMIYTGFRVGELFNIRREDVDVQNMTIRGGSKTEAGKNRLVPVH 252

Query: 239 DGFMKLLAMTPIGKETFFI--NNDKQKMNATQFSIW-FKAKATKAGVNKSAHGVRKFSAT 295
           +   K +    +    + I   +  +K N   +    F        +    H  R   AT
Sbjct: 253 EKIQKYVMDYYLQNYEYLISDTDTGKKFNYHMYRNQYFDKIMDMLDMEHLPHDCRHTFAT 312

Query: 296 ISADAGATAHELMATYGWKTVDQAE-TYT-KGADRIRLGIKNSR 337
             ++ GA +  +    G  +    E  YT K   ++R  I   +
Sbjct: 313 RLSNYGANSTCIKKLIGHSSYATTEKIYTHKDVAQLRRAISTLK 356


>gi|213972135|ref|ZP_03400225.1| SAM-like protein [Pseudomonas syringae pv. tomato T1]
 gi|302062047|ref|ZP_07253588.1| Phage integrase:Phage integrase, N-terminal SAM-like protein
           [Pseudomonas syringae pv. tomato K40]
 gi|302131887|ref|ZP_07257877.1| Phage integrase:Phage integrase, N-terminal SAM-like protein
           [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|213923112|gb|EEB56717.1| SAM-like protein [Pseudomonas syringae pv. tomato T1]
          Length = 320

 Score =  115 bits (289), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 54/277 (19%), Positives = 103/277 (37%), Gaps = 32/277 (11%)

Query: 84  WGSLA-VNSRISFESYFDQIIRKSGDF---DYRKITTKHI---RSGVESRKHTPSSAIQF 136
           + +L    +R ++++  +      G     ++R +T  H+   R+ +E R    ++  + 
Sbjct: 33  FANLDNPRTRRAYQNDLEDFCGFVGLASADEFRVVTRSHVLAWRAQLEHRGLAGATIRRK 92

Query: 137 LTSMRVLFKWAVRQE-YVAINPCLSVERPKRKT-EGIRPWTKED-----MQQFKSFWSEG 189
           L ++  LF   +        NP   V+RPK ++ EG  P   +      ++       +G
Sbjct: 93  LAALASLFDHLLESNAIAGGNPVHGVKRPKIESNEGKTPALGDHQAKALLEAPDETTLKG 152

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKT-QKTGTIITVELPDG------ 240
            + R     LLY GLR  ++    V  +Q+   I  +K   K G +  + +         
Sbjct: 153 QRDRALLAVLLYHGLRREEAALLQVSDIQDRRGIQHLKVHGKGGKVRYLPMHPVAAGRIH 212

Query: 241 --FMKLLAMTPIGKETFFINNDKQ----KMNATQFSIWFKAKATKAGV---NKSAHGVRK 291
                        K   FI    +     + A        A A KAG+       HG+R 
Sbjct: 213 QYLESSGHHLADRKVPLFIPLRGKLTGAGITANGIYTVVAAYAKKAGIEVDGLGVHGLRA 272

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
            +AT + +  A   ++ A  G   +   + Y +  +R
Sbjct: 273 TAATNALEHEADIAKVQAWLGHANISTTKIYDRRENR 309


>gi|288929393|ref|ZP_06423238.1| site-specific recombinase, phage integrase family/ribosomal subunit
           interface protein [Prevotella sp. oral taxon 317 str.
           F0108]
 gi|288329495|gb|EFC68081.1| site-specific recombinase, phage integrase family/ribosomal subunit
           interface protein [Prevotella sp. oral taxon 317 str.
           F0108]
          Length = 293

 Score =  115 bits (289), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 45/275 (16%), Positives = 95/275 (34%), Gaps = 28/275 (10%)

Query: 76  SEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESRKHTP 130
            ++     +  + +  +  S+            + D    +  +    IR+ +ES     
Sbjct: 4   EQFLNYLQYELNRSELTIASYGDDLRAFEAFFKNKDTQLSWEAVDADLIRNWMESMMDKG 63

Query: 131 SSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            SA    + L+++R  +++ + + YV  NP   V  PKR     +   + +M +      
Sbjct: 64  CSATTIQRRLSALRSFYRFGLTRGYVEKNPARGVVGPKRSRPLPQFLREGEMDRLLDEVP 123

Query: 188 EGS--QPRLAFEFLL---YSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241
            G   +  LA+  +L    +G+R ++        +      IK   K      +   D  
Sbjct: 124 VGESYRDLLAYTIVLTFYSTGMRLAELVGLNDDSIDFGARVIKVLGKGSKQRLIPFADEL 183

Query: 242 MKLLAMTPIGKE--------TFFINNDKQKMNATQFSIWFKAKATKAGV----NKSAHGV 289
              L      ++         FF++   +++         +  A+ A V     +S H +
Sbjct: 184 EAALKAYIARRDAEVARCDKAFFVDQRGERVKRGAVQNSVR--ASLAKVTSMKKRSPHVL 241

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           R   AT   +  A    +    G +++   E YT 
Sbjct: 242 RHSFATAMLNNDAGLESVKKLLGHESLSTTEIYTH 276


>gi|260893825|ref|YP_003239922.1| integrase family protein [Ammonifex degensii KC4]
 gi|260865966|gb|ACX53072.1| integrase family protein [Ammonifex degensii KC4]
          Length = 315

 Score =  115 bits (289), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 46/282 (16%), Positives = 103/282 (36%), Gaps = 18/282 (6%)

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKIT 115
           R+      +  +T + ++ E+         A  +   + ++  +  R+  D   DY ++ 
Sbjct: 2   RKLFRLSERLQSTWQEVLEEFCLHQQAQGKAERTLYDYRAWIGRFFRRHPDAWGDYERLR 61

Query: 116 TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
              +          P++       +++ F W VR+ Y+  NP   +++ +R+    RP +
Sbjct: 62  RAVLEHFAHLSHKAPATFNMARKYLKLFFAWCVREGYLPANPVDGIKK-RREDGTPRPVS 120

Query: 176 KEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI----KTQ 227
            E +Q+  +        G +      F L +G+R  ++ +   +H       +    +  
Sbjct: 121 LEAVQKLLTACDRKSFTGLRDYALILFQLDTGVRPGEALKLLPEHFNLRSLEVYIPAQVS 180

Query: 228 KTGTIITVELPDG-------FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280
           KT    TV +           + +       K   F +   Q M  + ++      + +A
Sbjct: 181 KTRAARTVVISPQTARAVQRLLAVRPAAWGSKAPVFCSETGQPMQVSSWTHRLALISRRA 240

Query: 281 GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           GV  + + +R  +AT     GA+A  +    G   +     Y
Sbjct: 241 GVKVTPYQLRHTAATELLRGGASAFAVARQLGHLHLSTTRRY 282


>gi|167841723|ref|ZP_02468407.1| integrase family protein [Burkholderia thailandensis MSMB43]
          Length = 368

 Score =  115 bits (289), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 53/377 (14%), Positives = 104/377 (27%), Gaps = 52/377 (13%)

Query: 1   MTPSLRLPPFVTKERTRHGKIIYYFR--KGHGRRIRLPYPHESTFIPAYMSALTGSTPKR 58
           M    + P  +           ++    +   +  R+        +  Y S    +    
Sbjct: 1   MIGRRKTPSHLPARVYEKHGTWWFVDKDRKWHKLCRVKEGI----VRLYESLAEYTRDSD 56

Query: 59  EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF-DYRKITTK 117
                    PT L   I          + A  +R ++      I R+ G       +   
Sbjct: 57  GKAALENTMPTLLDDWIKRKL-----PTYAPKTRSNYLKMIGLIRREFGPQWLIEDVRPT 111

Query: 118 HIRSGVES-RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
            +   ++      PSS+ ++   + ++F  AVR+     NP   +   + K    R  T 
Sbjct: 112 DVARFLDKHFHDKPSSSNKYKALLSLIFMHAVRRGLRDRNPAREIGAAREKKR-DRYITD 170

Query: 177 EDMQQFKS--------FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
            ++   ++          S         +    +  R  D      Q++ +   S    K
Sbjct: 171 AELDAVRAAVIASADYKTSSARSILCLIDLAYQTAQRIGDLLALNWQNVSDEGISFHPSK 230

Query: 229 T----GTIITVELPDGFMKLLAMTPIGKET----FFINNDKQKMNATQFSIWFKAKATKA 280
           T    G  + +E+ D     L     GK          +   +         +K    +A
Sbjct: 231 TVNSSGVRLLIEMTDDLRATLDQARGGKVMAIGPVICTHTGGRFTYIGAYSGWKRACDRA 290

Query: 281 -------------------GVNKSAHGVRKFSATIS-ADAGATAHELMATYGWKTVDQAE 320
                               +    H +R  + T      GA A +  +  G  T     
Sbjct: 291 RAAYEKACAEKGIAPDPKHLIGMHFHDLRAKALTDLKRQRGAAAAQ--SLAGHTTEGMTA 348

Query: 321 TYTKGADRIRLGIKNSR 337
            YTK  +  R+     +
Sbjct: 349 HYTKAREVERVQPVPMK 365


>gi|320321405|gb|EFW77525.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. glycinea str. B076]
 gi|320331161|gb|EFW87128.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. glycinea str. race 4]
 gi|330882731|gb|EGH16880.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. glycinea str. race 4]
          Length = 320

 Score =  115 bits (289), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 54/277 (19%), Positives = 106/277 (38%), Gaps = 32/277 (11%)

Query: 84  WGSLA-VNSRISFESYFDQIIRKSGDF---DYRKITTKHI---RSGVESRKHTPSSAIQF 136
           + +L    +R ++++         G     D+R++T  H+   R+ +E R    ++  + 
Sbjct: 33  FANLDNTRTRRAYQNDLTDFSAFIGLASADDFRQVTRSHVLAWRANLEQRGLAGATIRRK 92

Query: 137 LTSMRVLFKWAVRQE-YVAINPCLSVERPKRKT-EGIRPWTKED-----MQQFKSFWSEG 189
           L ++  LF   +        NP   V+RPK ++ EG  P   +      ++       +G
Sbjct: 93  LAALASLFDHLLESNAIAGGNPVHGVKRPKIESNEGKTPALGDHQAKALLEAPDESTLKG 152

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKT-QKTGTIITVELPDG------ 240
            + R     LLY GLR  ++ +  V  +  +  I  +K   K G +  + L         
Sbjct: 153 LRDRAMLAVLLYHGLRREEAAQLQVSDIQERRGIQHLKIHGKGGKVRYLPLHPVAAGRIH 212

Query: 241 --FMKLLAMTPIGKETFFINNDKQK----MNATQFSIWFKAKATKAGV---NKSAHGVRK 291
               +        K   FI+   +     ++A       +A   KAG+       HG+R 
Sbjct: 213 WYLERSGHHLDDKKVPLFISLRGKSTGASISANGIYTVVEAYTKKAGIEVAGLGVHGLRA 272

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
            +AT + +  A   ++ A  G   +   + Y +  +R
Sbjct: 273 TAATNALEHEADIAKVQAWLGHANISTTKIYDRRENR 309


>gi|307545255|ref|YP_003897734.1| phage integrase family protein [Halomonas elongata DSM 2581]
 gi|307217279|emb|CBV42549.1| phage integrase family protein [Halomonas elongata DSM 2581]
          Length = 342

 Score =  115 bits (289), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 45/286 (15%), Positives = 92/286 (32%), Gaps = 19/286 (6%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-KHTP 130
             L   Y         +  ++ +      ++     + +   +T   I S ++ R   + 
Sbjct: 61  GRLFDRYEAEIIPAKPSPETQRANRQELKRLRAVFSNCEPEDLTVHDIYSFMDKRGAQSK 120

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           + A   L  ++ +F++  R   +  NP   V + K +       T  + ++F    S   
Sbjct: 121 TQANHELALLKHVFRYGQRWGVIEHNPADPVTKFKLRPRDRYV-TDNEFRRFLRQTSP-- 177

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA---- 246
             R        +GLR  D     +  LQ++   ++T K      +   D   +L+     
Sbjct: 178 WVRRYALLKYKTGLRQKDMLGLRLDQLQSDGILLRTSKASKQAVIPWDDELRQLIREIQA 237

Query: 247 ---MTPIGKETFFINNDKQKMNATQFSIWF----KAKATKAGVNK-SAHGVRKFSATISA 298
                     T F   + +  N  QF   +    +    + GV + + H +R   AT + 
Sbjct: 238 DNLARGKQGPTLFCKRNGEPYNKDQFHSRWQYGMRLAIQEGGVERFTEHDLRAKHATDAQ 297

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
             G     + A          E Y +  + +R+            D
Sbjct: 298 SQGLD---VQANLQHSDKRTTEVYLRAKEVLRVSALGLDEFVDAPD 340


>gi|238763615|ref|ZP_04624575.1| Tyrosine recombinase [Yersinia kristensenii ATCC 33638]
 gi|238698093|gb|EEP90850.1| Tyrosine recombinase [Yersinia kristensenii ATCC 33638]
          Length = 263

 Score =  115 bits (289), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 40/237 (16%), Positives = 83/237 (35%), Gaps = 16/237 (6%)

Query: 104 RKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
            + G   ++ +    +RS V   K      SS    L+++R    W V Q  + +NP   
Sbjct: 5   EQMGLAHWQTLDAAQVRSLVSRSKRAGLHSSSLALRLSALRSFLNWLVSQGVMQVNPAKG 64

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217
           V  P+      +    +++ +            + R   E +  +GLR S+      +H+
Sbjct: 65  VSTPRSGRHLPKNIDVDEVDKLLDIDLNDPLAVRDRAMLEVMYGAGLRLSELVGMNCKHV 124

Query: 218 QNNIFSIKTQKTGTI--------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF 269
                 +     G+           V+  + +++L  +     +  F+ N  ++++A   
Sbjct: 125 DLASGEVWVMGKGSKERKVPIGKTAVKWLEHWLELRELFEPQDDAIFLANTGKRISARNV 184

Query: 270 SIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              F     K GV  +   H +R   AT   ++      +    G   +   + YT 
Sbjct: 185 QKRFAEWGVKQGVSSHIHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTH 241


>gi|255029340|ref|ZP_05301291.1| hypothetical protein LmonL_09813 [Listeria monocytogenes LO28]
          Length = 450

 Score =  115 bits (289), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 39/278 (14%), Positives = 97/278 (34%), Gaps = 27/278 (9%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK------ITTKHIRSGVESRKHTP 130
           +Y  S    + +VN+  ++E+      R   +           +  +   + ++ +  + 
Sbjct: 13  DYLHSER--NYSVNTSTAYENDLLDFRRFLNEQAITTYQQVTFLDVRIYLTELKQKSFSR 70

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-----FKSF 185
           ++  + ++S+R  + + +R+  +  NP   V   K +    + +  E+M+      ++  
Sbjct: 71  TTVARKISSLRSFYTFLLRENVINENPFTYVSHAKNQLRLPKFFYSEEMEALFQVVYEDN 130

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVEL------- 237
            +   + R+  E L  +G+R S+     +  L  +  +I    K      V         
Sbjct: 131 ETLTLRDRVLLEVLYGTGIRVSECAGILLPDLDTSYQAILIRGKGNKERYVPFGAYAEDA 190

Query: 238 ----PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRK 291
                   + L++      +   +N+    +             +KA + +    H +R 
Sbjct: 191 ITDYLPERVNLMSRYKKSHDALLVNHYGDPLTTRGIRYCLTKIISKASLTRKIHPHMLRH 250

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             AT   + GA    +    G  ++   + YT    R 
Sbjct: 251 TFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKRA 288


>gi|228988955|ref|ZP_04148994.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|229159077|ref|ZP_04287131.1| DNA integration/recombination/invertion protein [Bacillus cereus
           ATCC 4342]
 gi|228624403|gb|EEK81176.1| DNA integration/recombination/invertion protein [Bacillus cereus
           ATCC 4342]
 gi|228770774|gb|EEM19300.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
          Length = 369

 Score =  115 bits (289), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 47/312 (15%), Positives = 107/312 (34%), Gaps = 38/312 (12%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE 124
               TL+  ++ + +     S+  ++ + + ++ +  +I   G     K+   HI+   +
Sbjct: 60  PSKVTLEDYLNHWLEIKS-MSIERSTFVGYRAFINQHVIPSIGMVTLHKLNVMHIQKCYK 118

Query: 125 SRKHTPSSAIQFLTSMRVL---FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
           +      +    L   R+L      AV+Q  ++ NP    E PK++   I+ WT+E++++
Sbjct: 119 TAIDRGIANNSVLLMHRILKSALNLAVKQNIISRNPADFAEIPKKERTSIQTWTEEEVKK 178

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--------------NNIFSIKTQ 227
           F    S+ S+  + +   + +G+R  +      Q +               +N      +
Sbjct: 179 FL-LHSQESRYHIGYLLAITTGMRMGEVLGLRWQDVDFEKHTVTINQTSGHDNQIKKTAK 237

Query: 228 KTGTIITVELPDGFMKLLAMTPI--------------GKETFFINNDKQKMNATQFSIWF 273
              +  T+ +P   ++ L    +                +    N     +    F   F
Sbjct: 238 TNSSKRTIPVPKETIESLKKHKVLINQEKLRLGSAYQDFDLINCNEFGMIIKKANFRKNF 297

Query: 274 KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRL 331
                 AGV +   H +R   AT+    G     +    G   +      Y+       +
Sbjct: 298 IRAIHNAGVKEIKFHDLRHTHATLLLKQGVNPKIISERLGHTDISMTLSVYSHVL--PNM 355

Query: 332 GIKNSRRISSVV 343
             +  +  S  +
Sbjct: 356 QEEAVKNFSKSI 367


>gi|238784731|ref|ZP_04628734.1| Tyrosine recombinase [Yersinia bercovieri ATCC 43970]
 gi|238714327|gb|EEQ06336.1| Tyrosine recombinase [Yersinia bercovieri ATCC 43970]
          Length = 267

 Score =  115 bits (289), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 40/242 (16%), Positives = 81/242 (33%), Gaps = 16/242 (6%)

Query: 99  FDQIIRKSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAI 155
             ++  + G   ++ +    +RS V   K      SS    L+++R    W V Q  +  
Sbjct: 4   LMEMGEQMGLAHWQTLDAAQVRSLVSRSKRAGLHASSLALRLSALRSFLNWLVSQGVMQA 63

Query: 156 NPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLAFEFLLYSGLRCSDSCRA 212
           NP   V  P+      +    +++ +            + R   E +  +GLR S+    
Sbjct: 64  NPAKGVSTPRSGRHLPKNIDVDEVDKLLDIDLNDPLAVRDRAMLEVMYGAGLRLSELVGM 123

Query: 213 GVQHLQNNIFSIKTQKTGTI--------ITVELPDGFMKLLAMTPIGKETFFINNDKQKM 264
             +H+      +     G+           V     ++ L  +     +  F+ N  +++
Sbjct: 124 NCKHVDLASGEVWVMGKGSKERKVPIGKTAVTWLYHWLALRELFEPQDDAIFLANTGKRI 183

Query: 265 NATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           +A      F     K GV  +   H +R   AT   ++      +    G   +   + Y
Sbjct: 184 SARNVQKRFAEWGVKQGVSSHIHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIY 243

Query: 323 TK 324
           T 
Sbjct: 244 TH 245


>gi|239908080|ref|YP_002954821.1| site-specific recombinase [Desulfovibrio magneticus RS-1]
 gi|239797946|dbj|BAH76935.1| site-specific recombinase [Desulfovibrio magneticus RS-1]
          Length = 410

 Score =  115 bits (289), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 49/275 (17%), Positives = 88/275 (32%), Gaps = 17/275 (6%)

Query: 70  TLKWLI-SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK- 127
           T      ++Y   A       + R + E   + +    G    + I   H++  + +   
Sbjct: 107 TFADYCANDYLPLARVTKKPESIRKTEEHVKNWLGPVVGRLPLKNIRQMHMQKVLLAMAN 166

Query: 128 --HTPSSAIQFLTSMRVLFKWAVRQEYVAI-NPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
              +P S      + R ++  A    +V + +P   V  PK   E  R  ++ +     +
Sbjct: 167 AGRSPRSIQYVFATFRAIWNHARNNGFVQVQSPTKGVALPKVNNERKRYLSRPEADALLA 226

Query: 185 FWSEGSQPRLAFEFL-LYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGF 241
             +  S        L L +G+R S+          L      I   K      + +    
Sbjct: 227 ELATRSPQTHDLALLSLDTGMRFSEVTGLTWGCVDLDKGRIDILNAKGEKDRAIPMTARV 286

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---------SAHGVRKF 292
            +L      G     I   +      + S  F     K G+NK         S H +R  
Sbjct: 287 KELFESMTPGASNELIFKSRVGGQIGKISKSFDLAVEKLGLNKDVDDPKQIFSFHCLRHT 346

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
            A+   +AG   + +  T G  T    + Y+  AD
Sbjct: 347 CASWLIEAGTDLYVVQKTLGHSTPVVTQRYSHVAD 381


>gi|254824662|ref|ZP_05229663.1| integrase/recombinase XerC [Listeria monocytogenes FSL J1-194]
 gi|293593901|gb|EFG01662.1| integrase/recombinase XerC [Listeria monocytogenes FSL J1-194]
          Length = 300

 Score =  115 bits (289), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 38/273 (13%), Positives = 95/273 (34%), Gaps = 27/273 (9%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK------ITTKHIRSGVESRKHTP 130
           +Y  S    + +VN+  ++E+      R   +           +  +   + ++ +  + 
Sbjct: 13  DYLHSER--NYSVNTSTAYENDLLDFRRFLNEQAITTYQQVTFLDVRIYLTELKQKSFSR 70

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-----FKSF 185
           ++  + ++S+R  + + +R+  +  NP   V   K +    + +  E+M+      ++  
Sbjct: 71  TTVARKISSLRSFYTFLLRENVINENPFTYVSHAKNQLRLPKFFYSEEMEALFQVVYEDN 130

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVEL------- 237
            +   + R+  E L  +G+R S+     +  L  +  +I    K      V         
Sbjct: 131 ETLTLRDRVLLEVLYGTGIRVSECAGILLPDLDTSYQAILIRGKGNKERYVPFGVYAEDA 190

Query: 238 ----PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRK 291
                     L++      +   +N+    +             +KA + +    H +R 
Sbjct: 191 ITDYLPERANLMSHYKKSHDALLVNHYGDPLTTRGIRYCLSKIISKASLTRKIHPHMLRH 250

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK 324
             AT   + GA    +    G  ++   + YT 
Sbjct: 251 TFATDLLNNGADMRTVQELLGHASLSSTQIYTH 283


>gi|154252172|ref|YP_001412996.1| tyrosine recombinase XerD [Parvibaculum lavamentivorans DS-1]
 gi|154156122|gb|ABS63339.1| tyrosine recombinase XerD [Parvibaculum lavamentivorans DS-1]
          Length = 319

 Score =  115 bits (289), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 48/279 (17%), Positives = 91/279 (32%), Gaps = 34/279 (12%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKH---TPSSAIQFLTS 139
              A N+  ++E               D  + +   IR  +E+      + S+A + L++
Sbjct: 23  RGAARNTLDAYERDLKDFSGFLVSRGRDLVQASANDIRQYLENLSDQGLSASTAARRLSA 82

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS--------- 190
           +R    +   +     +PC S+E P+R     +  T E++    S               
Sbjct: 83  IRQFHGFLFAEGVRTDDPCGSIEGPRRARPLPKTLTVEEVDALLSAAQRAEDGRTQEESV 142

Query: 191 ----QPRLA--FEFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGTIITVELPDGFMK 243
               + RL    E L  +GLR S+     +  ++    F   + K G    V L +    
Sbjct: 143 LAYKRARLVCLMEVLYATGLRVSELVGLPLSAVRGQERFLAVSGKGGRERLVPLSETARA 202

Query: 244 LLAM--------TPIGKETFFINNDKQ--KMNATQFSIWFKAKATKAGVNKS---AHGVR 290
            +                 +   +  +   +   +F+   K  A  AG++ S    H +R
Sbjct: 203 AIDAYLPLRSLRLGEQVSPWLFPSRGRQGHLTRHRFAQLLKDLAVAAGLDASRVSPHTLR 262

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              A+     GA    +    G   +   + YT   D  
Sbjct: 263 HAFASHLLANGADLRAVQQMLGHADISTTQIYTHVLDER 301


>gi|154498007|ref|ZP_02036385.1| hypothetical protein BACCAP_01987 [Bacteroides capillosus ATCC
           29799]
 gi|150272997|gb|EDN00154.1| hypothetical protein BACCAP_01987 [Bacteroides capillosus ATCC
           29799]
          Length = 344

 Score =  115 bits (289), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 50/319 (15%), Positives = 104/319 (32%), Gaps = 38/319 (11%)

Query: 46  AYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK 105
            Y+    G  P+   ++       ++  L  +  +S     +      S+ +Y  +   K
Sbjct: 41  RYIKIERGCVPRSTDLDQ-----ISIDDLDLDLVRSVKLSDVY-----SYMNYLSRDRAK 90

Query: 106 SGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERP 164
             +                    TP++  + + ++R  +K+   + + +  NP   ++ P
Sbjct: 91  HANSPDTG------------YGLTPAARARKIAAIRSFYKYITSKAKLMDENPMQDLDSP 138

Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222
           + K       + ++  Q        ++ R        L  GLR S+     +  ++ +  
Sbjct: 139 RLKKALPHYLSLDESIQLLESVDGENKERDYCILIIFLNCGLRISELVGLNLTDIRKDQL 198

Query: 223 SIKTQKTGTIITV-------ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKA 275
            +  +     I          + D          I K   FI     +M         K 
Sbjct: 199 RVLGKGNKERILFLNEACRQAIDDWLAVRGTQGIIDKNALFITRRHTRMTTDAVHYMIKN 258

Query: 276 KATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRL 331
           + T AG++    SAH +R  +AT+    G     L    G   ++  + YT   +D +R 
Sbjct: 259 RLTAAGLDASMYSAHKLRHTAATLMLQNGVDVRTLQEVLGHDHLNTTQIYTHVDSDDLRT 318

Query: 332 GIKN--SRRISSVVDSDDP 348
             K     R+     +  P
Sbjct: 319 AAKANPLGRVGRKKSTPPP 337


>gi|30265160|ref|NP_847537.1| prophage LambdaBa03, site-specific recombinase phage integrase
           family protein protein [Bacillus anthracis str. Ames]
 gi|47778394|ref|YP_022022.2| prophage lambdaba03, site-specific recombinase phage integrase
           family protein protein [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49187970|ref|YP_031223.1| prophage LambdaBa03, site-specific recombinase phage integrase
           family protein protein [Bacillus anthracis str. Sterne]
 gi|165869874|ref|ZP_02214531.1| prophage LambdaBa03, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0488]
 gi|167635252|ref|ZP_02393567.1| prophage LambdaBa03, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0442]
 gi|167642002|ref|ZP_02400235.1| prophage LambdaBa03, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0193]
 gi|170687981|ref|ZP_02879194.1| prophage LambdaBa03, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0465]
 gi|170707721|ref|ZP_02898172.1| prophage LambdaBa03, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0389]
 gi|177652943|ref|ZP_02935270.1| prophage LambdaBa03, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0174]
 gi|190567810|ref|ZP_03020722.1| prophage LambdaBa03, site-specific recombinase, phage integrase
           family [Bacillus anthracis Tsiankovskii-I]
 gi|227817893|ref|YP_002817902.1| prophage LambdaBa03, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. CDC 684]
 gi|229603805|ref|YP_002869354.1| prophage LambdaBa03, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0248]
 gi|254686439|ref|ZP_05150298.1| prophage LambdaBa03, site-specific recombinase, phage integrase
           family protein [Bacillus anthracis str. CNEVA-9066]
 gi|254724438|ref|ZP_05186222.1| prophage LambdaBa03, site-specific recombinase, phage integrase
           family protein [Bacillus anthracis str. A1055]
 gi|254735645|ref|ZP_05193352.1| prophage LambdaBa03, site-specific recombinase, phage integrase
           family protein [Bacillus anthracis str. Western North
           America USA6153]
 gi|254744268|ref|ZP_05201948.1| prophage LambdaBa03, site-specific recombinase, phage integrase
           family protein [Bacillus anthracis str. Kruger B]
 gi|254755566|ref|ZP_05207599.1| prophage LambdaBa03, site-specific recombinase, phage integrase
           family protein [Bacillus anthracis str. Vollum]
 gi|254757021|ref|ZP_05209049.1| prophage LambdaBa03, site-specific recombinase, phage integrase
           family protein [Bacillus anthracis str. Australia 94]
 gi|30259837|gb|AAP29023.1| prophage LambdaBa03, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. Ames]
 gi|47552099|gb|AAT34497.2| prophage LambdaBa03, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. 'Ames Ancestor']
 gi|49181897|gb|AAT57273.1| prophage LambdaBa03, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. Sterne]
 gi|164714197|gb|EDR19717.1| prophage LambdaBa03, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0488]
 gi|167510052|gb|EDR85465.1| prophage LambdaBa03, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0193]
 gi|167529295|gb|EDR92047.1| prophage LambdaBa03, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0442]
 gi|170127278|gb|EDS96154.1| prophage LambdaBa03, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0389]
 gi|170668090|gb|EDT18840.1| prophage LambdaBa03, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0465]
 gi|172081718|gb|EDT66788.1| prophage LambdaBa03, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0174]
 gi|190561226|gb|EDV15199.1| prophage LambdaBa03, site-specific recombinase, phage integrase
           family [Bacillus anthracis Tsiankovskii-I]
 gi|227006502|gb|ACP16245.1| prophage LambdaBa03, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. CDC 684]
 gi|229268213|gb|ACQ49850.1| prophage LambdaBa03, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0248]
          Length = 301

 Score =  115 bits (289), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 43/293 (14%), Positives = 103/293 (35%), Gaps = 27/293 (9%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFES----YFDQIIRKSGDFDYRKITTKHIRSGVE-- 124
           LK L+ E+       + +  +  ++          +       D   + T HI+  V+  
Sbjct: 2   LKDLLKEFVFDLKIKNYSDRTIDTYNYNVGQLITYLNEHHEVNDVEDVATFHIKKFVQHQ 61

Query: 125 -SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
            S     +     + S+R  +K+ V +EYV++N    ++  K   E I+ +T +++ +  
Sbjct: 62  ISLGKKANYINTLIKSLRSFYKYLVVEEYVSVNIMNKIKLLKEDVEVIKTFTDDEVAKMI 121

Query: 184 SFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239
             +       ++ ++     + +G+R S+        + +    IK  K      V +  
Sbjct: 122 EAYDFKTYLNARNKVIIAMFVDTGMRMSELINLQSSWIYDTSLRIK-GKGSKWRHVPMSL 180

Query: 240 GFMKLL-----------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG----VNK 284
              K +               +  + +F++   + +   Q     K    +AG    +  
Sbjct: 181 MLKKYMIRYERIKAKYFEKKALEHDNYFLSRAGKPICTVQIENIVKIAGLRAGVREDIRC 240

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
           S H VR ++   +   G   +      G + +   + Y +G +   +     +
Sbjct: 241 SPHTVRHYAIQSNLRNGLDLYSCSKIAGHENIQVTKRYLQGLEMENILEMAQK 293


>gi|320641462|gb|EFX10896.1| Site-specific recombinase, phage integrase family protein
           [Escherichia coli O157:H7 str. G5101]
          Length = 229

 Score =  115 bits (289), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 84/228 (36%), Gaps = 18/228 (7%)

Query: 6   RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
           +LPP V   +        Y  K   R        ES  + A    L     K E   + R
Sbjct: 12  KLPPKVYPNK------YSYVWKPTSR--------ESVTLTAIEDGLAALWKKYEETVNHR 57

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
            +  T   L  ++  SA++  L+  ++  +  +  +++   G      +  +HIR  ++ 
Sbjct: 58  DRAMTFGRLWEKFLASAYYSELSPRTQKDYLQHQKKLLAVFGKVLADSVKPEHIRRYMDK 117

Query: 126 RKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
           R   + + A    +SM  ++ W   + YV  NPC  V + K K       T ++ Q   S
Sbjct: 118 RGEQSKTQANHEKSSMSRVYSWGYERGYVKANPCAGVSKFKAKNRERYV-TDKEYQAVLS 176

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
                    +A E       R SD      + + N+   I+  KTG  
Sbjct: 177 VAPL--PVFIAMEIAYLCAARVSDVLSLKWEQIGNDGIFIQQGKTGKK 222


>gi|259909522|ref|YP_002649878.1| site-specific tyrosine recombinase XerC [Erwinia pyrifoliae Ep1/96]
 gi|224965144|emb|CAX56676.1| site-specific tyrosine recombinase [Erwinia pyrifoliae Ep1/96]
          Length = 345

 Score =  115 bits (289), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 55/304 (18%), Positives = 107/304 (35%), Gaps = 31/304 (10%)

Query: 64  PRKKPTTLKWLISEY---RKSAHWGS--LAVNSRISFESYF---DQIIRKSGDFDYRKIT 115
           P   P +L  L+  +   R+  +W    L V +   +       ++ I  + D     + 
Sbjct: 24  PAHDPKSLYALLLRFVKWRRERNWSETTLKVQTHHGYRFICWAQERGIHHAADVTRPVLE 83

Query: 116 T--KHIRSGVESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
              +H+    +      +P +    L  ++V F+W  +Q  +  NP   +E P+ +    
Sbjct: 84  RWQRHLYRYRKGNGEPLSPRTQRTALQPLQVWFRWLAKQNLILANPAADLELPRLEKHLP 143

Query: 172 RP-WTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGV--QHLQNNIFSI 224
           R   + E ++   +        G + R   E L  +G+R  +  R           I +I
Sbjct: 144 RTILSVEQVEDIVNLCDLNTLQGMRDRALLELLWSTGIRRGEVARLETWSADFSRKILTI 203

Query: 225 KTQKTGTIITVELPDGFMKLLA----------MTPIGKETFFINNDK-QKMNATQFSIWF 273
              K      + + +  +  L           +   G +  F+  D    + A   +   
Sbjct: 204 VQGKGKQDRVIPVGERALWWLRHYLHEVRPEIVAVAGCKALFVAMDGVAGLTANGITHAV 263

Query: 274 KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
                 AG+ K S H  R   AT   + GA    + A  G ++V+  + YT+ + R    
Sbjct: 264 VPYLRAAGIEKGSCHLFRHAMATQMLENGADLRWIQAMLGHRSVESTQIYTQVSIRALQA 323

Query: 333 IKNS 336
           +  S
Sbjct: 324 VHAS 327


>gi|317489856|ref|ZP_07948349.1| tyrosine recombinase XerD [Eggerthella sp. 1_3_56FAA]
 gi|325829949|ref|ZP_08163407.1| tyrosine recombinase XerD [Eggerthella sp. HGA1]
 gi|316911011|gb|EFV32627.1| tyrosine recombinase XerD [Eggerthella sp. 1_3_56FAA]
 gi|325488116|gb|EGC90553.1| tyrosine recombinase XerD [Eggerthella sp. HGA1]
          Length = 297

 Score =  115 bits (289), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 37/277 (13%), Positives = 78/277 (28%), Gaps = 28/277 (10%)

Query: 76  SEYRKSAHWGSL----AVNSRISFESYFDQIIRKSGDFDYRKITTKH------IRSGVES 125
             YR+   +  +    +  +  ++ +      +         +            S +  
Sbjct: 3   ELYREYLAYLRVERGSSPLTVSAYAADLKDYAQFLEKRGVESLDDVDREVIVAYESDLFG 62

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           R +  S+  + ++ ++   ++ VR+ Y   NP  +++ PK         +   +    S 
Sbjct: 63  RGYAASTVDRHVSVLKGFHRFLVREGYARRNPADTIQLPKAPDRLPDVLSVAQVDAMLSR 122

Query: 186 W----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE----- 236
                    + +   E L   GLR S+     +         +     G    +      
Sbjct: 123 PLDEGPLALRNQAILEVLYGCGLRVSECTGLDLGDAILEEGYLHILGKGNKERIAPISGA 182

Query: 237 --------LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAH 287
                   L  G  +L+          F+N    ++                GV N   H
Sbjct: 183 ALRALRDYLERGRPELVRSYAKSTSAVFLNARGGRLTRQSVHSLVAEAGRFIGVANLHPH 242

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            +R   AT     GA    +    G   +   + YT 
Sbjct: 243 TLRHSFATHMLAGGADLRVIQEILGHSDISTTQIYTH 279


>gi|253690334|ref|YP_003019524.1| tyrosine recombinase XerC [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251756912|gb|ACT14988.1| tyrosine recombinase XerC [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 311

 Score =  115 bits (289), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 46/259 (17%), Positives = 90/259 (34%), Gaps = 19/259 (7%)

Query: 85  GSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFLT 138
             L+  ++ S+      II     +G  D+RK+    +RS V   K       S    L+
Sbjct: 31  RQLSPLTQTSYLRQLSAIITILSAAGVVDWRKLDAAGVRSVVSRSKRDGLHSGSLALRLS 90

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE---GSQPRLA 195
           ++R    W V +  +  NP   +  P+      +    ++M +      +     + R  
Sbjct: 91  ALRSFLDWMVSRGVLTANPAKGISTPRAGRPLPKNMDVDEMDRLLDIDLDDPLAVRDRTM 150

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI--------ITVELPDGFMKLLAM 247
            E +  +GLR ++      QH+      +     G+           V   + ++ L  +
Sbjct: 151 LEVMYGAGLRLAELVGMDCQHIDLASGEVWVMGKGSKERKLPIGKTAVTWLERWLALREL 210

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAH 305
                +  FI+N  ++++       F     K GVN     H +R   AT   ++     
Sbjct: 211 FGPQDDAVFISNQGRRISMRNVQKRFAEWGIKQGVNSHVHPHKLRHSFATHMLESSGDLR 270

Query: 306 ELMATYGWKTVDQAETYTK 324
            +    G   +   + YT 
Sbjct: 271 AVQELLGHANLSTTQIYTH 289


>gi|87199919|ref|YP_497176.1| phage integrase [Novosphingobium aromaticivorans DSM 12444]
 gi|87135600|gb|ABD26342.1| phage integrase [Novosphingobium aromaticivorans DSM 12444]
          Length = 293

 Score =  115 bits (289), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 45/263 (17%), Positives = 84/263 (31%), Gaps = 18/263 (6%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLF 144
              A N+  ++           G            R  +       SS  +  +++R  +
Sbjct: 20  RGAAANTLAAYRRDLAGAAEVIGPLATAG-REDLARLAIAWSDLAASSLARKSSALRQFY 78

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF--------KSFWSEGSQPRLAF 196
            + V +     +P  ++ RPK +    R      ++          +S   E ++     
Sbjct: 79  GFLVDEGMREEDPSSALPRPKTRRPLPRLLDHGQVEALFRTAEEDARSGTPEAARMLALL 138

Query: 197 EFLLYSGLRCSDSCRAGVQHL-QNNIFSIKTQKTGTIITVEL----PDGFMKLLAMTPIG 251
           E L  SGLR ++     +  + ++      T K G    V +           L     G
Sbjct: 139 ELLYGSGLRATELVSLPLAAIPRDAPLLTITGKGGVQRMVPVSARATRALADWLVARGKG 198

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELM 308
               F +     ++  +     +  A +AG++    S H +R   AT   + GA    L 
Sbjct: 199 GRFVFPSPRGGHLSRVRLFQLLRDLALRAGLDPEKVSPHVLRHAFATHLLEGGADLRVLQ 258

Query: 309 ATYGWKTVDQAETYTKGADRIRL 331
              G   +   + YT   D  RL
Sbjct: 259 TLLGHADIATTQIYTH-VDAARL 280


>gi|325853546|ref|ZP_08171378.1| phage integrase, N-terminal SAM domain protein [Prevotella
           denticola CRIS 18C-A]
 gi|325484350|gb|EGC87278.1| phage integrase, N-terminal SAM domain protein [Prevotella
           denticola CRIS 18C-A]
          Length = 294

 Score =  115 bits (289), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 44/263 (16%), Positives = 101/263 (38%), Gaps = 23/263 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYR----KITTKHIRSGVESRKHTPSSA---IQFL 137
            + +  + IS+    +   R   + D +     + T  +R  +E      ++A    + +
Sbjct: 15  RNYSPMTVISYRKDLEAFERFCQELDPQITWESVDTDVVRDWMEDMMDKGNAASSVNRRI 74

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK--SFWSEGSQPRLA 195
           +++R  +++A+R   V+ +P   ++ P+R+    +   + +M+Q    + W++G +  LA
Sbjct: 75  SALRSFYRFALRCGLVSKDPVHGLQGPRRQKPLPQFLKESEMEQLLDPAMWTDGYEDVLA 134

Query: 196 FEFL---LYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAM---- 247
              +     +G+R S+      + + +    +K T K      +       + LA     
Sbjct: 135 RTLIVTFYETGIRLSELTGLDDRDVDDVTCELKVTGKRNKQRIIPFGKELEETLAAYRCV 194

Query: 248 ----TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAG 301
               T     T F     +++   Q     K   +K      ++ H +R   AT   +  
Sbjct: 195 RDARTGDSSPTLFRTEKGERITNAQVRALVKKNLSKVSTLKKRTPHVLRHTFATAMLNHE 254

Query: 302 ATAHELMATYGWKTVDQAETYTK 324
           A    +    G +++   E YT 
Sbjct: 255 AGLESVKKLLGHESLSTTEIYTH 277


>gi|301166099|emb|CBW25674.1| putative integrase [Bacteriovorax marinus SJ]
          Length = 399

 Score =  115 bits (289), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 54/343 (15%), Positives = 109/343 (31%), Gaps = 36/343 (10%)

Query: 20  KIIYYFRKGHGRRIRLPYPHESTFIPAY-----MSALTGSTPKREYINSPRKKPTTLKWL 74
           K     R   GRRI        +F   Y      + L       +      K     K  
Sbjct: 60  KYRIDVRMPDGRRI------TKSFSRKYDADKFKAELLLEKTGIQDTGIYIKNDVKFKDF 113

Query: 75  ISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIR---SGVESRKHTP 130
           ++ + ++   G  A  ++ ++ S   + I+   G+   + I  +H R   + +     + 
Sbjct: 114 VATWFETQVKGRKAKKTQQAYVSDLRNHILPILGEIQLKHIRYQHARLLENSIIETGKSA 173

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
            +  + +   + +   AV+ EY+  +P       + +   +  W+KE+++ F  F     
Sbjct: 174 RTVNKVMMEFKTILNDAVKLEYLLKSPVRGYPELQEEPRHLTFWSKEEIRVFIDFNKANP 233

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-------------NNIFSIKTQKTGTIITVEL 237
              L +   L +GLR  + C      +               +     T KT     V +
Sbjct: 234 LLDL-YIVALNTGLRLGEICGLCWDRVDFTTNNLVINRSLTRDGIR-NTTKTHRGRYVPM 291

Query: 238 PDGFMKLLAMTPIGKET--FFINNDKQKMNATQFSIW-FKAKATKAGVN--KSAHGVRKF 292
                 +L      + +   F     + +     +   FK    +AG+      H +R  
Sbjct: 292 NTIVRDILQKRLRTRISKFVFSTQTGKPLPYDHVTQRHFKKSQREAGLENIIRFHDLRHT 351

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIK 334
            A+     G   + L    G   +     Y     D +R   +
Sbjct: 352 FASHFMMNGGNIYTLQKLLGHTDIKTTMIYAHLDQDFLREAAE 394


>gi|300781243|ref|ZP_07091097.1| tyrosine recombinase XerD [Corynebacterium genitalium ATCC 33030]
 gi|300532950|gb|EFK54011.1| tyrosine recombinase XerD [Corynebacterium genitalium ATCC 33030]
          Length = 298

 Score =  115 bits (289), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 49/264 (18%), Positives = 88/264 (33%), Gaps = 24/264 (9%)

Query: 85  GSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKH---IRSGVESRKHTPSSAIQFLT 138
             L+ N+  ++    D+    +  +G  D   +T        + +       SSA + L 
Sbjct: 18  RGLSANTLSNYRRDVDRYVTWLESAGKTDLNSVTASDLGDYVADLRRGGLAASSAGRALV 77

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRL 194
             R L K+A  +  VA +    V  PK   +     + E++          +    + + 
Sbjct: 78  VARGLHKFATVEGAVAADVAAGVSPPKTGEKLPDTLSIEEVGLLLDACPTDTPADLRDKA 137

Query: 195 AFEFLLYSGLRCSDSCRAGVQHL---QNNIFSIKTQKTGTIITVELPDGFMKLLAM---- 247
             E L  +G R S+     V  +   ++  F   T K      V +       +      
Sbjct: 138 LLEVLYATGARVSEVLGLVVDDVVGLEDGTFIKVTGKGNKQRIVPVGSAARDAVEAYLVR 197

Query: 248 -----TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
                +       F+N     ++        K  A +AGV+K  S H +R   AT   + 
Sbjct: 198 GRPALSKGKTHALFLNKRGGALSRQSAWTVIKEAAGRAGVDKHISPHTLRHSFATHLLEG 257

Query: 301 GATAHELMATYGWKTVDQAETYTK 324
           GA    +    G  +V   + YT 
Sbjct: 258 GADVRTVQELLGHASVTTTQIYTH 281


>gi|213964731|ref|ZP_03392931.1| tyrosine recombinase XerC [Corynebacterium amycolatum SK46]
 gi|213952924|gb|EEB64306.1| tyrosine recombinase XerC [Corynebacterium amycolatum SK46]
          Length = 304

 Score =  115 bits (289), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 44/280 (15%), Positives = 96/280 (34%), Gaps = 26/280 (9%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF-DYRKITTKHIRSGVESRKH 128
           ++ ++ ++     +   L+  +  ++ +    ++       +      +       +   
Sbjct: 21  IEAILMDFLDELTYSRRLSGATVRAYRADLMPLLAGLDHISELSTPVIRAHLGAKHAEGA 80

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS- 187
             SS  +  TS+R    W V ++ +  +P L +  PK+        + E +++     S 
Sbjct: 81  ARSSLARLTTSIRQFCSWLVARQILDADPSLRLSTPKKHQHLPEVLSPEKVEEAIEKVSS 140

Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGF 241
                 ++     E L  +G+R  + C+A V  +    +I S+   K      V      
Sbjct: 141 EDSAVAARDLAIVELLYATGMRVEELCKADVSDVNFSRHIISV-VGKGDKQRIVPFGAPA 199

Query: 242 MKLLA----------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRK 291
              L            +   +   F+     ++N  Q        A     + S H +R 
Sbjct: 200 EAALKGWLQVRGNFPASAQAEHALFLGVRGGRLNPRQARRVIHKWA-----DVSPHALRH 254

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330
            +AT   + GA    +    G  ++   + YT   ADR+R
Sbjct: 255 SAATAMVEGGADLRVVQEMLGHSSLATTQIYTHVSADRLR 294


>gi|296532542|ref|ZP_06895255.1| integrase/recombinase XerD [Roseomonas cervicalis ATCC 49957]
 gi|296267143|gb|EFH13055.1| integrase/recombinase XerD [Roseomonas cervicalis ATCC 49957]
          Length = 294

 Score =  115 bits (289), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 44/277 (15%), Positives = 99/277 (35%), Gaps = 19/277 (6%)

Query: 85  GSLAVNSRISFESYFDQI----IRKSGDFDYRKITT-KHIRSGVESRKHTPSSAIQFLTS 139
              A N+  ++ +  + +     R+ G          +   +G+     +P +A + L++
Sbjct: 16  RGAARNTLAAYRADLEDVAGFARRQGGTLAGADTELLRRYLAGLTDAGLSPRTAARRLSA 75

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-----SEGSQPRL 194
           +R  +++   +   A +P   ++ P++ +   +   +E+++             G     
Sbjct: 76  LRQFYRFLAAEGVRADDPTEILDSPRQPSRVPKALRREEVEALLDAATRLPGKRGPLATA 135

Query: 195 AFEFLLYSGLRCSDSCRAGVQHL-QNNIFSIKTQKTGTIITVELPDG--FMKLLAMTPIG 251
             E L  SGLR S+      + L Q++   +   K      V + +      L    P  
Sbjct: 136 LLELLYCSGLRASELVSLPARALAQDSPLVLVRGKGNKERLVPISERARLAALSLQDPKK 195

Query: 252 KETFFINNDK--QKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHE 306
              +   +      +      +  K  A  AG++    S H +R   AT   + GA    
Sbjct: 196 PSKWLFPSRGAAGHLTRQSLLLLVKQAALAAGLDPAKLSPHVLRHSFATHLLEGGADLRA 255

Query: 307 LMATYGWKTVDQAETYTKG-ADRIRLGIKNSRRISSV 342
           L    G   +   + YT+   +R+R  ++    ++  
Sbjct: 256 LQMLLGHADIATTQIYTRVLEERLRQIVETHHPLAEA 292


>gi|229122156|ref|ZP_04251371.1| DNA integration/recombination/invertion protein [Bacillus cereus
           95/8201]
 gi|228661282|gb|EEL16907.1| DNA integration/recombination/invertion protein [Bacillus cereus
           95/8201]
          Length = 369

 Score =  115 bits (289), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 47/312 (15%), Positives = 106/312 (33%), Gaps = 38/312 (12%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE 124
               TL+  ++ + +     S+  ++ + + ++ +  +I   G     K+   HI+   +
Sbjct: 60  PSKVTLEDYLNHWLEIKS-MSIERSTFVGYRAFINQHVIPSIGMVALHKLNVMHIQKCYK 118

Query: 125 SRKHTPSSAIQFLTSMRVL---FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
           +      +    L   R+L      AV+Q  ++ NP    E PK++   I+ WT+E++++
Sbjct: 119 TAIDRGIANNSVLLMHRILKSALNLAVKQNIISRNPADFAEIPKKERTSIQTWTEEEVKK 178

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--------------NNIFSIKTQ 227
           F    S+ S+  + +   + +G+R  +      Q +               +N      +
Sbjct: 179 FL-LHSQESRYHIGYLLAITTGMRMGEVLGLRWQDVDFEKHTVTINQTSGHDNKIKKTAK 237

Query: 228 KTGTIITVELPDGFMKLLAMTPI--------------GKETFFINNDKQKMNATQFSIWF 273
              +  T+ +P   ++ L    +                +    N     +    F   F
Sbjct: 238 TNSSKRTIPVPKETIESLKKHKVLINQEKLRLGSAYQDFDLINCNEFGMIIKKANFRKNF 297

Query: 274 KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRL 331
                 AGV +   H +R   ATI    G     +    G   +      Y+       +
Sbjct: 298 IRAIHNAGVKEIKFHDLRHTHATILLKQGVNPKIISERLGHTDISMTLSVYSHVL--PNM 355

Query: 332 GIKNSRRISSVV 343
             +  +     +
Sbjct: 356 QEEAVKNFGKSI 367


>gi|66044739|ref|YP_234580.1| Phage integrase:Phage integrase, N-terminal SAM-like [Pseudomonas
           syringae pv. syringae B728a]
 gi|63255446|gb|AAY36542.1| Phage integrase:Phage integrase, N-terminal SAM-like [Pseudomonas
           syringae pv. syringae B728a]
          Length = 320

 Score =  115 bits (289), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 53/277 (19%), Positives = 101/277 (36%), Gaps = 32/277 (11%)

Query: 84  WGSLA-VNSRISFESYFDQIIRKSGDF---DYRKITTKHI---RSGVESRKHTPSSAIQF 136
           + +L    +R ++++  +      G     ++R +T  H+   R+ +E R    ++  + 
Sbjct: 33  FANLDNPRTRRAYQNDLEDFCGFVGLVSADEFRVVTRSHVLAWRAQLEHRGLAGATIRRK 92

Query: 137 LTSMRVLFKWAVRQE-YVAINPCLSVERPKRKT-EGIRPWTKED-----MQQFKSFWSEG 189
           L ++  LF   +        NP   V+RPK ++ EG  P   +      +        +G
Sbjct: 93  LAALASLFDHLLESNAIAGGNPVHGVKRPKIESNEGKTPALGDHQAKALLDAPDETTLKG 152

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKT-QKTGTIITVELPD------- 239
            + R     LLY GLR  ++    V  +  +  I  +K   K G +  + L         
Sbjct: 153 QRDRAILAVLLYHGLRREEAALLQVSDIQERRGIQHLKVHGKGGKVRYLPLHPVAAGRIH 212

Query: 240 -GFMKLLAMTPIGKETFFINNDKQ----KMNATQFSIWFKAKATKAGV---NKSAHGVRK 291
                        K   F+    +     + A        A A KAG+       HG+R 
Sbjct: 213 LFLESSGHHLADRKVPLFMPLRGKLTGAGITANGIYTVVAAYAKKAGIEVDGLGVHGLRA 272

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
            +AT + +  A   ++ A  G   +   + Y +  +R
Sbjct: 273 TAATNALEHEADIAKVQAWLGHANISTTKIYDRRENR 309


>gi|150017415|ref|YP_001309669.1| site-specific tyrosine recombinase XerC [Clostridium beijerinckii
           NCIMB 8052]
 gi|149903880|gb|ABR34713.1| phage integrase family protein [Clostridium beijerinckii NCIMB
           8052]
          Length = 329

 Score =  115 bits (289), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 51/248 (20%), Positives = 91/248 (36%), Gaps = 24/248 (9%)

Query: 103 IRKSGDFDYRKITTKHIRSGV---ESRKHTPSSAI-QFLTSMRVLFKWAV-RQEYVAINP 157
           I    D   R I  + + + +   E  +   S A  + + +++  FK+   + + +  NP
Sbjct: 68  ISVIDDEFLRGIKLRDLYAFLSFTEKYRDNSSYARARKVATLKSFFKFLFGKAKVITENP 127

Query: 158 CLSVERPKRKTEGIRPWTKED----MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG 213
            L +E PK         T       ++         S+      F L  G+R S+ C   
Sbjct: 128 ALELESPKINKRHPVYLTLNQSIHLLESLNKNDKNYSRDYCILMFFLNCGMRLSELCSIQ 187

Query: 214 VQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA----------MTPIGKETFFINNDKQK 263
           +  ++++  +I   K     TV L D  +K LA            P  K+  F+++    
Sbjct: 188 IDKIRDDTLTII-GKGNKERTVYLNDACLKALANYLNVRDDSKALPDNKKFLFLSSRNGP 246

Query: 264 MNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQA 319
           +N     I  K   T AG+     + H +R  +AT+    G      L +  G   +   
Sbjct: 247 INKRTVEIMIKKHITNAGLTDDKYTPHKLRHTAATLMYKYGNVDIRSLQSILGHTNISTT 306

Query: 320 ETYTKGAD 327
           + YT   D
Sbjct: 307 QIYTHVDD 314


>gi|315084829|gb|EFT56805.1| phage integrase, SAM-like domain protein [Propionibacterium acnes
           HL027PA2]
          Length = 331

 Score =  115 bits (289), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 41/293 (13%), Positives = 89/293 (30%), Gaps = 54/293 (18%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDF------DYRKITTKHIRSGVESRKHTPSSAIQFLT 138
             L+ N+  ++     +     G        +  ++  +  R  ++     P+S  + + 
Sbjct: 20  RGLSDNTVQAYRRDLLRYQEYLGSRGIGSLAEVTRVDVEEFRRHLDHIGLAPASVTRCVV 79

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRL 194
           ++R L ++AV    +  +    +    R     +  + + ++   +       EG +   
Sbjct: 80  AVRNLHRFAVGSGQLQADVTAGMSPGTRSRRLPKALSMDQVESLLAAPDTSTVEGLRDAA 139

Query: 195 AFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKT-QKTGTIITVELPDGFMKLLAMTP 249
             E L  +G R S+ C   V  +     +    ++   K      V L     K +    
Sbjct: 140 LLELLYGTGARVSEVCALDVDDIRPVLDDPDLGLRLIGKGDKERIVPLGSYAAKAVDAWL 199

Query: 250 I------------------------------------GKETFFINNDKQKMNATQFSIWF 273
           I                                    G+    +N   ++++        
Sbjct: 200 IRGRPAWAEIGNGEHALLLNTRGRRLSRQSAWAEIGNGEHALLLNTRGRRLSRQSAWAVI 259

Query: 274 KAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           +     AG++    S H +R   AT   D GA    +    G  +V   + YT
Sbjct: 260 RRAGEAAGLDVEHLSPHSLRHSYATHLLDGGADVRVVQELLGHSSVTTTQIYT 312


>gi|312794335|ref|YP_004027258.1| integrase family protein [Caldicellulosiruptor kristjanssonii
           177R1B]
 gi|312181475|gb|ADQ41645.1| integrase family protein [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 374

 Score =  115 bits (289), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 49/330 (14%), Positives = 105/330 (31%), Gaps = 39/330 (11%)

Query: 39  HESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESY 98
                      AL G         +   +  T   L+  +  +     +++++  S+ S 
Sbjct: 31  GGFDTKAEAEEALPGILNIIYQNKNKLLERKTFGELLDLWLNTVAKNRVSLSTFQSYSSS 90

Query: 99  FD-QIIRKSGDFDYRKITTKHIRSG----VESRKHTPSSAIQFLTSMRVLFKWAVRQEYV 153
               I    GD++  K+T   ++      +  +  + + A+     +     +AV+ + +
Sbjct: 91  IALHIKPFLGDYELSKLTPMDLQKYYQHIMTEKGLSSTLALYHHRIIHQALDYAVKMDML 150

Query: 154 AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG 213
             NP   V+ PK++      W +E +++    + E +  R+     +Y+G+R  +     
Sbjct: 151 EKNPADYVDPPKKRNYQPSIWDEETIKKTLEIFKE-TNIRIPVLLAVYTGMRIGEITALK 209

Query: 214 VQHLQNNIFSIKTQKT-----------------GTIITVELPDGFMKLLAMTPIG----- 251
              +      I   KT                  +   V + +  ++ L           
Sbjct: 210 WDDVNLEQGYITVSKTLMKINGQTYIKEKAENKNSYRIVAISNQVVEELKEWKAKQEKLK 269

Query: 252 --------KETFFIN-NDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG 301
                    E F     D +  +    +  F+    K G+ K   H +R   A++    G
Sbjct: 270 KELKELYHDEGFVCTFEDGRVQDPKYITKVFQKTIEKHGLPKIRFHDLRHTHASLLLKHG 329

Query: 302 ATAHELMATYGWKTVDQA-ETYTKGADRIR 330
                +    G  TV      Y+   D  R
Sbjct: 330 VDPKHISDRLGHSTVTTTLNIYSHVFDEKR 359


>gi|269137482|ref|YP_003294182.1| site-specific recombinase XerC [Edwardsiella tarda EIB202]
 gi|267983142|gb|ACY82971.1| site-specific recombinase XerC [Edwardsiella tarda EIB202]
 gi|304557555|gb|ADM40219.1| Tyrosine recombinase XerC [Edwardsiella tarda FL6-60]
          Length = 303

 Score =  115 bits (289), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 39/259 (15%), Positives = 85/259 (32%), Gaps = 19/259 (7%)

Query: 85  GSLAVNSRISFES---YFDQIIRKSGDFDYRKITTKHIRSGVESRKHT---PSSAIQFLT 138
             L+  +  ++         ++ + G  D+  + T  +RS V   +     P+S    L+
Sbjct: 23  RQLSPRTVETYRRQLAASAALLLEGGLCDWAALDTTRVRSLVARSRRQGLEPASLALRLS 82

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS---QPRLA 195
           ++R    W V +  +  NP   V  P++     +    +D+ +        +   + R  
Sbjct: 83  ALRSFLDWQVSRGALTANPAKGVAAPRQGRHLPKNLDVDDVNRLLDIDEGDTLAVRDRAM 142

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLAM------- 247
            E +   GLR S+      +H+           K      + +    ++ L         
Sbjct: 143 LEVMYGGGLRLSELVGLDCRHVDLTTGEVWVLGKGSKERRLPVGREAVRWLQTWLSLRLS 202

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAH 305
                +  F++    +++       F     K GV  +   H +R   AT   ++     
Sbjct: 203 LQPQDDALFVSRLGGRISPRSVQKRFAEWGVKQGVTSHIHPHKLRHSFATHMLESSGDLR 262

Query: 306 ELMATYGWKTVDQAETYTK 324
            +    G   +   + YT 
Sbjct: 263 AVQELLGHANLSTTQIYTH 281


>gi|257898819|ref|ZP_05678472.1| phage integrase [Enterococcus faecium Com15]
 gi|257836731|gb|EEV61805.1| phage integrase [Enterococcus faecium Com15]
          Length = 301

 Score =  115 bits (289), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 47/281 (16%), Positives = 99/281 (35%), Gaps = 34/281 (12%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFE---SYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127
           L++LI E          +  ++ ++E    +F   + +SGD D  K     +R  + +  
Sbjct: 11  LRYLIVE-------RGYSEKTKEAYEEDILHFKHFLEESGDADLLKAEYFTVRVYLSALA 63

Query: 128 H-----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
                 + +S  + + S+R  +++ +++E +  NP   V   K+     R + +++MQ  
Sbjct: 64  DHRPSYSRNSISRKIASLRSFYQYLLKEEVIKENPFSYVHLKKKNLRLPRFFYEDEMQAL 123

Query: 183 KSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVEL 237
                       + R   E L  SG+R S+     V  +  ++   +   K        L
Sbjct: 124 FDSVAGDSPLDLRNRALLEVLYGSGIRLSECSNLLVSDIDFDSEVMLIHGKGNKERYAPL 183

Query: 238 ------------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS 285
                        +G   L+       +  F+N+  + +  T           K+ ++  
Sbjct: 184 GSFAQDALQEYFTEGRQVLMTKYHEEHDIVFVNHHGKPITPTGIEYVLNQMIKKSSLDSD 243

Query: 286 --AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              H +R   AT   + GA    +    G   +   + Y  
Sbjct: 244 IHPHMLRHTFATHLLNNGADLRTVQELLGHANLSTTQIYAH 284


>gi|258541884|ref|YP_003187317.1| phage DNA recombinase XerD [Acetobacter pasteurianus IFO 3283-01]
 gi|256632962|dbj|BAH98937.1| phage DNA recombinase XerD [Acetobacter pasteurianus IFO 3283-01]
 gi|256636019|dbj|BAI01988.1| phage DNA recombinase XerD [Acetobacter pasteurianus IFO 3283-03]
 gi|256639074|dbj|BAI05036.1| phage DNA recombinase XerD [Acetobacter pasteurianus IFO 3283-07]
 gi|256642128|dbj|BAI08083.1| phage DNA recombinase XerD [Acetobacter pasteurianus IFO 3283-22]
 gi|256645183|dbj|BAI11131.1| phage DNA recombinase XerD [Acetobacter pasteurianus IFO 3283-26]
 gi|256648238|dbj|BAI14179.1| phage DNA recombinase XerD [Acetobacter pasteurianus IFO 3283-32]
 gi|256651291|dbj|BAI17225.1| phage DNA recombinase XerD [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256654282|dbj|BAI20209.1| phage DNA recombinase XerD [Acetobacter pasteurianus IFO 3283-12]
          Length = 306

 Score =  115 bits (289), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 47/284 (16%), Positives = 99/284 (34%), Gaps = 27/284 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESR---KHTPSSAIQFLTS 139
            + A N+  ++E+                +  TT+ +++ + +         +  + L+ 
Sbjct: 17  RAAAPNTLAAYEADLTSCAESLAREGQTLQTATTEGLQNWMAALVGSGQARRTVARRLSC 76

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----------- 188
           +R  + + +R+   A NP   ++ PK  T   R  ++ ++    +  +E           
Sbjct: 77  IRQFYLFLLREGMRADNPAAHLDSPKPHTPLPRFLSESEVLALLNACAEPAGASLAKKRR 136

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHL-QNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
           G   + A E L  SGLR S+      + +  +    +   K G    V L D   +    
Sbjct: 137 GILAKAALELLYASGLRISELLALPRKAIAGDQRMIMVRGKGGRERLVPLSDSAREAAQA 196

Query: 248 TPIGKETF---FINNDK---QKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISA 298
                      F+   +   + M    F       A +A ++    S H +R   AT   
Sbjct: 197 LLEVDAHLESPFLFPGRDPAKPMTRQAFDRILHTVAIRAEIDPARLSPHVLRHSFATHLL 256

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSRRISS 341
             GA    L    G   +   + YT    +R++  ++    +++
Sbjct: 257 AHGADLRALQMLLGHADIATTQIYTHVQTERLQKAVQAHHPLAA 300


>gi|254479225|ref|ZP_05092570.1| site-specific recombinase, phage integrase family
           [Carboxydibrachium pacificum DSM 12653]
 gi|214034826|gb|EEB75555.1| site-specific recombinase, phage integrase family
           [Carboxydibrachium pacificum DSM 12653]
          Length = 348

 Score =  115 bits (289), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 53/293 (18%), Positives = 99/293 (33%), Gaps = 29/293 (9%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESY-FDQIIRKSGDFDYRKITTKHIRSGV- 123
           + P T+K     Y     +  L        +   FD+I     D D   I +  +     
Sbjct: 54  RSPNTIKAY--AYDLILFFRFLKKRRGKVSDDIPFDEI--DISDVDIDLIESVDLNDLYA 109

Query: 124 ------ESRKHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTK 176
                   R +TP +  + + S+R  + +  R+ + ++ NP   +E PK         T 
Sbjct: 110 YLSFVTNERSNTPPARARKVASLRSFYNYLYRKAKVISKNPTQELESPKLSVRHPIYLTL 169

Query: 177 EDMQQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234
           E+ ++  +      + R        L  GLR S+     +  ++ +  ++   K     T
Sbjct: 170 EESKKLLNSIDGPFKERDYAIITLFLNCGLRVSELVNINLDDIKEDKLTVI-GKGNKQRT 228

Query: 235 VELP--------DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA---GVN 283
           + L         D            K+  F++   ++++        K     A   G  
Sbjct: 229 IYLNEACIKAISDYLKVRPKEGVKDKKALFLSKRLKRISVKTVQYLVKKHLKHANLEGKK 288

Query: 284 KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGAD-RIRLGIK 334
            SAH +R  +AT+    G      L    G   V   + YT   D ++R  + 
Sbjct: 289 YSAHKLRHTAATLMYRYGNVDIRTLQKLLGHSNVSTTQIYTHVDDSQLREAVN 341


>gi|152976197|ref|YP_001375714.1| site-specific tyrosine recombinase XerC [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152024949|gb|ABS22719.1| tyrosine recombinase XerC [Bacillus cytotoxicus NVH 391-98]
          Length = 299

 Score =  115 bits (289), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 39/272 (14%), Positives = 94/272 (34%), Gaps = 26/272 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGD------FDYRKITTKHIRSGVESRKHTPSSAIQFLT 138
            + +  +  S+++  +  ++           D   +  +   + +   K    S  + ++
Sbjct: 18  RNYSKYTIASYQNDLEHFVQFMEREGISSFLDVTYVDVRLYLTTLHDEKLARKSVARKVS 77

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194
           S+R L+++ +R+ Y   NP      PK++    +    E++++           G + + 
Sbjct: 78  SLRSLYRFLMREGYREDNPFALASLPKKEWSIPKFLYAEELEKLFEVSDTKTPLGQRNQA 137

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE------------LPDGF 241
             E +  +G+R S+     +  +  ++ +I    K      +             + +G 
Sbjct: 138 LLELMYATGIRVSECVTLKLTDIDFSVGTILVMGKGKKQRYIPFGSYAQDALITYIENGR 197

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
            +L   T    +  F+N     +              K  +    S H +R   AT   D
Sbjct: 198 KQLAKKTEEYSQMVFLNAKGVPLTDRGVRYILNELIKKTSLTMRISPHMLRHTFATHMLD 257

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            G+    +    G + +   + YT    + RL
Sbjct: 258 EGSDLRAVQELLGHENLSTTQIYTH-VSKERL 288


>gi|78777830|ref|YP_394145.1| Phage integrase [Sulfurimonas denitrificans DSM 1251]
 gi|78498370|gb|ABB44910.1| Phage integrase [Sulfurimonas denitrificans DSM 1251]
          Length = 368

 Score =  115 bits (289), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 58/312 (18%), Positives = 103/312 (33%), Gaps = 30/312 (9%)

Query: 45  PAYMSALTGS----TPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD 100
            AY   +       T +     S R K  T +     Y     W  +   + IS E Y+ 
Sbjct: 54  DAYDRLIQAKHHLMTGEESPFKSQRAKKFTFEDAWLAYY---EWAKVNKKTYISDEQYYR 110

Query: 101 -QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA---IQFLTSMRVLFKWAVRQEYVA-- 154
             I     + D + I +K I    +       +A     ++  MR +  +A++ + +   
Sbjct: 111 LHIAPTFANKDIKSIKSKDIEQFKQLYTSKGYAAQSVKHYIGLMRHIINYAIKNDLIKNY 170

Query: 155 INPCLS--VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSC 210
            NP     V+ P          +KE  +       +   P+L      LLY+G R S+  
Sbjct: 171 ANPISGGKVKLPTIDNARQAFLSKEQARVILDELLQYENPQLYQLTILLLYTGARFSEVA 230

Query: 211 RAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE--TFFINNDKQKMNA 266
                ++  + N+   K  K G    V + +   +++      K       N   ++M  
Sbjct: 231 SLTWNNINFETNMIYFKATKNGNARWVFMNELVKEVIEQLKADKNNNLIIANTKGKQM-E 289

Query: 267 TQFSIWF--------KAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
                W         + K   A    + H +R   A+  A AG     +    G KT++ 
Sbjct: 290 RMLHSWQIVVDNIIDENKEADAKQRVTVHSLRHTHASWLAMAGLDILHIKEQLGHKTLEM 349

Query: 319 AETYTKGADRIR 330
              Y+      R
Sbjct: 350 TMRYSHLIPNKR 361


>gi|317477767|ref|ZP_07936960.1| tyrosine recombinase XerC [Bacteroides sp. 4_1_36]
 gi|316906112|gb|EFV27873.1| tyrosine recombinase XerC [Bacteroides sp. 4_1_36]
          Length = 294

 Score =  115 bits (289), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 41/263 (15%), Positives = 96/263 (36%), Gaps = 23/263 (8%)

Query: 85  GSLAVNSRISFESYFDQI----IRKSGDFDYRKITTKHIRSGVES---RKHTPSSAIQFL 137
            + +  +   + +   ++        GD     +  + +R  + S   +    ++  + L
Sbjct: 15  RNYSKGTVEYYRADILELQRFGEEMLGDLTPLDVDAELVREWIASLMGKGLASNTINRKL 74

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-----EGSQP 192
           +S+R  +K+ +R+  VA++P   V  PK+K        + +M +           EG + 
Sbjct: 75  SSVRTYYKFLLRRGKVAVDPLRKVTGPKKKKPLPVFLREGEMNRLLDDMDFGEGFEGCRD 134

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLA----- 246
            +  E    +G+R S+      + +  +   +K T K      +   +   + +      
Sbjct: 135 HMIIEMFYATGMRLSELIGLDDKDVDFSASLVKVTGKRNKQRLIPFDEELGRSMREYVNV 194

Query: 247 ---MTPIGKETFFINNDKQKMNATQFSIWFKA--KATKAGVNKSAHGVRKFSATISADAG 301
                P+  + FF+  + +++     +   K           +S H +R   AT   + G
Sbjct: 195 RNEAVPVRSDAFFVRKNGKRLYRGIVACLVKRNLSKVVTVKKRSPHVLRHTFATAMLNNG 254

Query: 302 ATAHELMATYGWKTVDQAETYTK 324
           A    +    G +++   E YT 
Sbjct: 255 ADLGSIKELLGHESLATTEVYTH 277


>gi|224368897|ref|YP_002603059.1| hypothetical protein HRM2_17930 [Desulfobacterium autotrophicum
           HRM2]
 gi|223691614|gb|ACN14897.1| hypothetical protein HRM2_17930 [Desulfobacterium autotrophicum
           HRM2]
          Length = 365

 Score =  115 bits (289), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 55/277 (19%), Positives = 100/277 (36%), Gaps = 25/277 (9%)

Query: 71  LKWLISEYRKSAHWGSLAVNS-RISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           +  + S+Y     W SL   S       +   I          KIT  H++  +      
Sbjct: 80  IDGVWSKYLT---WASLNKRSWIDDRIRWELHISAHLKGMKMDKITPSHVQDILNHMATK 136

Query: 130 ---------PSSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDM 179
                    P++  Q L  ++ +F W+++Q  Y   NPC SVE P        P  K  +
Sbjct: 137 DTPKGGHYAPATIKQVLVLIKRVFNWSMQQGLYQGGNPCKSVEAPMFDNRINNPLDKSGL 196

Query: 180 QQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQ--KTGTII 233
           +   S     +  R  L  +F LYSG R  +           +N++ +++    K+    
Sbjct: 197 RSLMSVLDTWNNERAILVIKFALYSGKRKGEVLSLTWDSVDFENHLLTLQAMNTKSKKAQ 256

Query: 234 TVELPDGFMKLL--AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRK 291
           ++ L +  M +L         +  F +          F   +K    +AG++   H +R 
Sbjct: 257 SLPLNNHCMTILERCRKLKVSDYVFPSTLGN--YYNTFDETWKRIRKRAGISIRFHDLRH 314

Query: 292 FSATISADAGA-TAHELMATYGWKTVDQAETYTKGAD 327
             A+  A +G    + L    G  T++  + Y    +
Sbjct: 315 TYASYLASSGKVDIYTLKELLGHSTIEMTQRYAHLVN 351


>gi|53715486|ref|YP_101478.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|60683459|ref|YP_213603.1| putative site-specific recombinase [Bacteroides fragilis NCTC 9343]
 gi|265767527|ref|ZP_06095193.1| tyrosine recombinase XerC [Bacteroides sp. 2_1_16]
 gi|52218351|dbj|BAD50944.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|60494893|emb|CAH09700.1| putative site-specific recombinase [Bacteroides fragilis NCTC 9343]
 gi|263252832|gb|EEZ24344.1| tyrosine recombinase XerC [Bacteroides sp. 2_1_16]
 gi|301164943|emb|CBW24504.1| putative site-specific recombinase [Bacteroides fragilis 638R]
          Length = 293

 Score =  115 bits (289), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 44/275 (16%), Positives = 99/275 (36%), Gaps = 24/275 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIR----KSGDFDYRKITTKHIRSGV---ES 125
           L   +     +  + +  + +++     Q+      +   FD  ++  + +R  +     
Sbjct: 2   LTDSFLDYLRYERNYSEKTVLAYGEDISQLREFAQERMEKFDPAEVKPELVREWIVSLMD 61

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           + +T +S  + L+S+R  +K+ +RQ  V+++P   +  PK K        + +M +    
Sbjct: 62  QGYTSTSVNRKLSSLRSFYKYLLRQGEVSVDPLRKITGPKNKKPLPSFLKESEMNKLLDD 121

Query: 186 WS-----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPD 239
                  +G + RL  E    +G+R S+      + +  +   +K T K      +   D
Sbjct: 122 TDFGEGFKGCRDRLIIEMFYATGMRLSELIGLDDKDVDFSASLLKVTGKRNKQRLIPFGD 181

Query: 240 GFMKLL--------AMTPIGKETFFINNDKQKMNATQFSIWFKA--KATKAGVNKSAHGV 289
              + +         M     + FF+  + +++         K           +S H +
Sbjct: 182 ELKETMLEYVDIRNEMISGRSDAFFVRENGERLYKNLVYNLVKRNLSKVVTLKKRSPHVL 241

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           R   AT   +  A    +    G  ++   E YT 
Sbjct: 242 RHTFATTMLNNDAELGAVKELLGHSSLATTEIYTH 276


>gi|37524549|ref|NP_927893.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|37525103|ref|NP_928447.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|37525111|ref|NP_928455.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|36783973|emb|CAE12838.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
 gi|36784529|emb|CAE13429.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
 gi|36784537|emb|CAE13437.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 376

 Score =  115 bits (288), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 54/305 (17%), Positives = 108/305 (35%), Gaps = 32/305 (10%)

Query: 64  PRKKPTTLKWLI---SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT---K 117
           P   P +L  L+     +R+  +W    +  +     +F       G +    IT    +
Sbjct: 24  PAHDPKSLYALLLRFVAWRQERNWSETTLKVQTHHTYHFILWATDRGLYYAADITRPILE 83

Query: 118 HIRSGVESRKHT------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
             +  +   + T        +    L  ++V FKW  +Q  +  NP   +E P+ +    
Sbjct: 84  RYQRYLYQYRKTNGEPLSIRTQRTQLQPLQVWFKWLTKQNLILANPAADIELPREEKRLP 143

Query: 172 R-PWTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSI 224
           R   + ++++   S        G++ R   E L  +G+R S++ R  +  +  +    +I
Sbjct: 144 RYILSIDEIEHILSLPDPNTLQGARDRALMELLWSTGIRRSEAARLDIYSIDGSRKTVTI 203

Query: 225 KTQKTGTIITVELPDGFMKLLA-----------MTPIGKETFFINNDKQKMNATQFSIWF 273
           +  K      + L +  +  L            +TP  +  F   +    +     +   
Sbjct: 204 RQGKGNKDRVLPLGERALNWLQFYQQQIRPQLLVTPDIQSLFVAMDGLDGLQPNGITNAV 263

Query: 274 KAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
                 AG+ K    H  R   AT   + GA    + A  G  +V+  + YT+ + R   
Sbjct: 264 SGYIRAAGIEKKGACHLFRHAMATQMLENGADLRWIQAMLGHASVESTQVYTQVSIRALQ 323

Query: 332 GIKNS 336
            +  S
Sbjct: 324 AVHAS 328


>gi|291513999|emb|CBK63209.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
          Length = 390

 Score =  115 bits (288), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 60/341 (17%), Positives = 105/341 (30%), Gaps = 44/341 (12%)

Query: 35  LPYPHESTFIPA--YMSALTGST---------PKREYINSPRKKPTTLKWLISEYRKSAH 83
           LP P             AL              +R    +P K+          Y K   
Sbjct: 61  LPNPRTPEERQKNKETLALAAEIRIDKEKVLVARRYDKAAPVKQKINFLEFFDAYVK--- 117

Query: 84  WGSLAVNSRISFESYFDQIIRKSGD--------FDYRKITTKHIRSGVESRKHT--PSSA 133
             +         E    +      +            ++T + +   V+  +       A
Sbjct: 118 --NYKKKDIRMMEGCLRRFRGFLAESYPSMQTNIKPDQMTKEMMIKFVDYLQQHSFGEGA 175

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-PWTKEDMQQFKSFWSEGSQP 192
             F    + + K+A+ Q+ +  NPC  V      T   +   + E++ Q  +   +    
Sbjct: 176 RGFFQRFKKVIKYAIDQDILLKNPCTGVPCVVDDTALRKDVLSLEEIAQLANTPYQNMDV 235

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQK-----TGTIITVELPDGFMKLL 245
           R AF F LY+GLR  D       ++   N        K     T +I+T+ L +  +KL+
Sbjct: 236 RRAFLFCLYAGLRYCDVVDLKYSNVDYANKTIRFDQNKTTGHSTHSIVTIPLSNTLLKLI 295

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISA-DAGA 302
              P      F        + T      +    +AG+ K  + H  R   A     +   
Sbjct: 296 GERPEKDGPIFTL-----PSHTGCLKALRIWVARAGIEKHITWHCARHSFAVNLLGECHT 350

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343
               + +  G   +   E YT+  D   L  K    +  +V
Sbjct: 351 DIKTVASLLGHSGLKHTEKYTRAVDS--LKEKAVNALPELV 389


>gi|322418059|ref|YP_004197282.1| integrase family protein [Geobacter sp. M18]
 gi|320124446|gb|ADW12006.1| integrase family protein [Geobacter sp. M18]
          Length = 356

 Score =  115 bits (288), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 55/343 (16%), Positives = 117/343 (34%), Gaps = 33/343 (9%)

Query: 11  VTKERTRHGKIIYYFRKGHGRRIRLPY--PHESTFIPA-----YMSALTGSTPKREYINS 63
           + + +T+ GK+ Y         +RL    P  +TF        +      +  +  +  +
Sbjct: 4   IQERKTQDGKVTYRV------LVRLKGYPPQSATFERKTDAKKWAQQTEAAIREGRHFKT 57

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
              K  T+  ++ +Y K+         S+ + E        + G +    +T   I    
Sbjct: 58  REAKKHTVAEMVDKYVKTV--LPTKPKSKDTQEGQLLWWKDEIGLYTLADVTPAMIGECR 115

Query: 124 ESRKH---------TPSSAIQFLTSMRVLFKWAV-RQEYVAINPCLSVERPKRKTEGIRP 173
           +             +P++ ++++ ++   F  AV    +V  +P   V++PK     +R 
Sbjct: 116 DKLLAGKTKGGGLRSPATTVRYMAALSHAFSVAVNEWGWVEDSPMRKVKKPKEPRGRVRF 175

Query: 174 WTKEDMQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKT 229
            T ++  +            L       L +G+R S+      + +        +   K 
Sbjct: 176 LTDDERNRLLEAAKRSCNNCLYPVVLLALSTGMRFSEIMNLKWKDIDLKRKCLILHDTKN 235

Query: 230 GTIITVEL----PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS 285
           G    V +         +   +  +G E  F +     M +     W  A       +  
Sbjct: 236 GERRNVPVVNLAHSVLTERSKVRRLGTELVFPSISDPTMPSNLRKSWAAAVRDANLEDFR 295

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
            H +R  +A+  A  GAT  E+    G KT+   + Y   +++
Sbjct: 296 FHDLRHSAASYLAMNGATLAEIAEVLGHKTLAMVKRYAHLSEQ 338


>gi|327198046|ref|YP_004306413.1| gp1 [Burkholderia phage KL3]
 gi|310657180|gb|ADP02294.1| gp1 [Burkholderia phage KL3]
          Length = 342

 Score =  115 bits (288), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 58/349 (16%), Positives = 113/349 (32%), Gaps = 37/349 (10%)

Query: 1   MTPSLRLPPFVTKERTRH---GKIIYYFRKG--HGRRIRLPYPHESTFIPAYMSALTGST 55
           M    + P  + + R+R    G + YY+  G   GRRI  P   +        + L G+ 
Sbjct: 1   MAGRAQTPGAIPRFRSRKNADGSLRYYYDHGEVDGRRILEPLGTDRVVALQRWAELEGAR 60

Query: 56  PKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT 115
                  S      T   L   YR        +  ++  ++ +  ++    G  +   +T
Sbjct: 61  A-----PSSETTRHTFAMLEQAYRI-RELPQKSAATQRMYDLFLSRLTAVIGARELDTLT 114

Query: 116 TKHIRSGVESRKHTPS--SAIQFLTSMRVLFKWAVRQEYVA-INPCLSVERPKRKTEGIR 172
              + +   +        +A +    + ++         +   NPC  V R K++T    
Sbjct: 115 PADVATIWRATAEKRGVVTANRTKAVLSLVLNCGRLWGMMTIANPCAGV-RGKKETGRQD 173

Query: 173 PWTKEDMQQFKSFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
               +++  + + ++   QP R A +       R SD  R    ++       +TQKTG 
Sbjct: 174 ILIDDEL--YAAVYTVADQPLRNAMDLADLCAQRPSDVLRVQRSNIVRGNLIFRTQKTGA 231

Query: 232 IITVELPDGFMKLLAMTPI-------GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284
            +TV++      L+                   + +   +   +    F     +AG++K
Sbjct: 232 FVTVQITGDLAALIERLLAWRGSKVDVSPYLLRDEEGYPLTKGKLRSRFDKARERAGIDK 291

Query: 285 SAHGVRKFSATISADAGATAHEL-------MATYGWKTVDQAETYTKGA 326
           +     KF        G T   +           G         Y +GA
Sbjct: 292 A-----KFQFRDLRARGVTHKTIDEGLEAGQRLAGHSGPGMTARYVRGA 335


>gi|270290225|ref|ZP_06196450.1| tyrosine recombinase XerC [Pediococcus acidilactici 7_4]
 gi|304384961|ref|ZP_07367307.1| tyrosine recombinase XerC [Pediococcus acidilactici DSM 20284]
 gi|270281006|gb|EFA26839.1| tyrosine recombinase XerC [Pediococcus acidilactici 7_4]
 gi|304329155|gb|EFL96375.1| tyrosine recombinase XerC [Pediococcus acidilactici DSM 20284]
          Length = 301

 Score =  115 bits (288), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 39/293 (13%), Positives = 99/293 (33%), Gaps = 29/293 (9%)

Query: 73  WLISEYRKSAH-WGSLAVNSRISFE---SYFDQIIRKSGDFD----YRKITTKHIRSGVE 124
             I ++++        +  +  ++      F + ++ +G+        +       S + 
Sbjct: 2   DWIEQFKRYLTVERQYSDKTVTAYLEDLQEFQKFLQTTGNKPELLAVDRFDANVFMSYLF 61

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ--- 181
            +    +S  + ++S+R  +++ ++ + +A NP   V+  K      R + +++M Q   
Sbjct: 62  DQNLKRTSISRKVSSLRAFYRFLIKNDVIAKNPFEFVQLKKHADHLPRFFYEKEMNQLFD 121

Query: 182 --FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELP 238
             ++       +     E L  +G+R S+        +  ++ +I    K      V   
Sbjct: 122 TVYQDQGPLHLRNAALLEVLYGTGMRVSECTNLRWTDIDFSMQTILVLGKGNKERYVPFG 181

Query: 239 ------------DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS- 285
                       + +  LL       +  F+N+  Q +               + +N   
Sbjct: 182 RYAKHALEDYHQNEWTSLLEKYHQTHQYVFVNHYGQPITVAGVEYVLNQIIKNSSLNGKI 241

Query: 286 -AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
             H +R   AT   + GA    +    G  ++   + YT    + +L     +
Sbjct: 242 HPHMLRHSFATAMLNNGADLRTVQELLGHASLSTTQIYTH-VTKEKLQESYRK 293


>gi|227513451|ref|ZP_03943500.1| site-specific recombinase XerD [Lactobacillus buchneri ATCC 11577]
 gi|227524593|ref|ZP_03954642.1| site-specific recombinase XerD [Lactobacillus hilgardii ATCC 8290]
 gi|227083324|gb|EEI18636.1| site-specific recombinase XerD [Lactobacillus buchneri ATCC 11577]
 gi|227088268|gb|EEI23580.1| site-specific recombinase XerD [Lactobacillus hilgardii ATCC 8290]
          Length = 331

 Score =  115 bits (288), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 39/281 (13%), Positives = 96/281 (34%), Gaps = 31/281 (11%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--------FDYRKITTKHIRSGV 123
            W +  Y +S      + ++  ++++   + ++   +                +   +G+
Sbjct: 29  DWFLK-YLRSER--HYSEDTVQAYQNDLTEFLKFLNETSKDHTSLIKIDSFDVESYLTGL 85

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
             +K+  +S  Q ++++R  + + ++ E +  NP   V    +     R +   +MQ   
Sbjct: 86  YDKKYARNSIAQKVSALRSFYGFLIKNEVIKNNPFEYVHLKNQNRRLPRFFYPTEMQALF 145

Query: 184 SFWSEGSQPRL-----AFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVE- 236
           S   +G +          E    +G+R S+     ++ +   N   + T K      V  
Sbjct: 146 SAAKKGERKLAFRNSAILEVFYSTGIRVSEGVTIQLKDIDLENQLILVTGKGRKQRYVPF 205

Query: 237 -----------LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--N 283
                      L +    L+       +  F+N+  + + +            ++ +  N
Sbjct: 206 GEPAKRAVESYLKESREPLMTKYHQKHDYLFVNHFGKPLTSRGIEYILNGIIKQSSLTTN 265

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              H +R   AT   + GA    +    G  ++   + YT 
Sbjct: 266 IHPHMLRHTFATEMLNNGADMRSVQELLGHSSLSTTQIYTH 306


>gi|323500158|ref|ZP_08105103.1| site-specific tyrosine recombinase XerC [Vibrio sinaloensis DSM
           21326]
 gi|323314787|gb|EGA67853.1| site-specific tyrosine recombinase XerC [Vibrio sinaloensis DSM
           21326]
          Length = 310

 Score =  115 bits (288), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 39/268 (14%), Positives = 96/268 (35%), Gaps = 22/268 (8%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSGV---ESRKHTP 130
           EY +S     L+++++ +++   + + +   + G  D+ ++ +  +R             
Sbjct: 21  EYLRSE--KGLSLHTQRNYKQQLETMAQHLVQLGLKDWSQVDSAWVRQLASKGMRDGMKA 78

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WS 187
           SS    L+S+R  F + + +  ++ NP   V  P++K    +    +++ Q         
Sbjct: 79  SSLATRLSSLRSFFDFLILRGEMSANPAKGVSAPRKKRPLPKNLDVDEVGQLLEVNEDDP 138

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE--------LP 238
              + R   E +  +GLR ++     V+ +      I+   K      V         + 
Sbjct: 139 LSVRDRAMMEMMYGAGLRLAELVSINVRDVSFTSGEIRVVGKGDKERKVPFSGMAAEWVN 198

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATI 296
                  ++    ++  F++    +++             K  V  + S H +R   AT 
Sbjct: 199 KWLKVRASLANSDEQALFVSKLGVRISHRNVQKRMAEWGQKQAVASHISPHKLRHSFATH 258

Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324
             ++      +    G + +   + YT 
Sbjct: 259 VLESSNNLRAVQELLGHENISTTQIYTH 286


>gi|193222420|emb|CAL63069.2| Tyrosine recombinase xerC [Herminiimonas arsenicoxydans]
          Length = 318

 Score =  115 bits (288), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 53/303 (17%), Positives = 98/303 (32%), Gaps = 47/303 (15%)

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD-------YRKITTKHIRS 121
             L  LIS+         L+  +  S+     +++  +   D             +   +
Sbjct: 12  GYLDNLISQ-------RQLSPLTITSYRRDLLELLALATASDGNAALSAISHFQIRKFAA 64

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
            + ++     S  + L++ R  F W   Q  VA NP   ++ PKR     +    +D  +
Sbjct: 65  QLHAKGLNARSIARKLSAWRGFFTWLSEQNAVASNPVDGIKAPKRNKPLPKALAADDAVR 124

Query: 182 FKSFWSEGSQP--------RLAFEFLLYSGLRCSDSCRA-------------GVQHLQNN 220
             S  S G           R  FE L  SGLR S+                 G      +
Sbjct: 125 LVSSNSPGKNADATMQLCNRAMFELLYSSGLRASELVGLDLKYAQENRYTSAGWIDFDAH 184

Query: 221 IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET--------FFINNDKQKMNATQFSIW 272
             ++ T K   + +  +    +  L      ++T         F++    +++A    + 
Sbjct: 185 E-AMVTGKGSKMRSAPIGQPAIDALKAWLAVRDTLLKLDPHPLFLSERGTRISARVLQLR 243

Query: 273 FKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
            KA A   G+      H +R   A+    +      +    G  ++   + YT   D  R
Sbjct: 244 LKAHAQAVGLPMDVHPHVLRHSFASHVLQSSGDLRAVQEMLGHASISATQIYT-SLDFQR 302

Query: 331 LGI 333
           L  
Sbjct: 303 LAQ 305


>gi|317128823|ref|YP_004095105.1| integrase family protein [Bacillus cellulosilyticus DSM 2522]
 gi|315473771|gb|ADU30374.1| integrase family protein [Bacillus cellulosilyticus DSM 2522]
          Length = 280

 Score =  115 bits (288), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 54/264 (20%), Positives = 102/264 (38%), Gaps = 12/264 (4%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV--ESRKH 128
           L  L   Y +     + +  +  S+      +IR  GD +   +T  H+++ +  E ++ 
Sbjct: 3   LSELWLHYEQDKTLENYSKKTLKSYRLELGLLIRFLGDMEAEDVTIFHLKNYLIEEQKRL 62

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
            PSS       +R  F+WA   + ++ NP + V+ PK      +P  +E ++  +   S+
Sbjct: 63  KPSSFQHRCKFIRSFFRWAHEYDLLSKNPAIKVKMPKDHYRIPKPVNEETLELLR-IASK 121

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAM 247
                L  EF+  +G+R  +      +     N       K      V         +  
Sbjct: 122 SPLEGLLVEFMYSAGVRVGEVYNLNKKDFNFTNRSVYVFGKGDKEREVYFSKRAEIWIQR 181

Query: 248 TPIGK----ETFFINNDK--QKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISAD 299
               +    E F  + +K  ++M+  Q    FK  A KA V+++   H +R   A+   +
Sbjct: 182 YFDSRQDEEECFICSKNKPYRRMSIDQIRWHFKKLARKAEVDENVYPHRLRHSYASHLIN 241

Query: 300 AGATAHELMATYGWKTVDQAETYT 323
            GA+   +    G K  +    YT
Sbjct: 242 RGASLEMVRDMLGHKRTETTRVYT 265


>gi|270293803|ref|ZP_06200005.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270275270|gb|EFA21130.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 386

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 50/303 (16%), Positives = 103/303 (33%), Gaps = 26/303 (8%)

Query: 39  HESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSA-----HWGSLAVNSRI 93
            ++ F+  Y          R      +      +     Y +        +  +      
Sbjct: 88  EDTPFLEYYRK----MVEDRHKNPESKGNWGNWRS-CLRYLEIYCDEKTTFKDITPEFIA 142

Query: 94  SFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYV 153
            F+ + D + + +    +++   +  R     +  + +S + +   +R     A  +  +
Sbjct: 143 GFKDFLDNVEKDT----HKRTGPRRERDVF--QGLSQNSKVSYFNKLRACINQAYDERII 196

Query: 154 AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG 213
           ++NP   +E  K         T E+++Q  +        + AF F   +GLR SD  +  
Sbjct: 197 SVNPLRGIEGFKAAEVKRDYLTLEEVKQLAATPCRYPILKRAFLFSCLTGLRKSDIQKLT 256

Query: 214 VQHL----QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF 269
              +           K +KTG    +++     K L      ++  F         + + 
Sbjct: 257 WSEVQKFGDYTRIIFKQKKTGGQEYLDISPQAEKYLGERGNPEDPVFTGFTYGSWTSVEL 316

Query: 270 SIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
             W    + KAGVNK  + H  R   A +  D GA  + +    G K +   + Y K  D
Sbjct: 317 QRW----SMKAGVNKNLTFHCGRHTFAVLMLDLGADIYTVSKLLGHKELATTQIYAKVLD 372

Query: 328 RIR 330
           + +
Sbjct: 373 KNK 375


>gi|227875332|ref|ZP_03993474.1| tyrosine recombinase [Mobiluncus mulieris ATCC 35243]
 gi|227844237|gb|EEJ54404.1| tyrosine recombinase [Mobiluncus mulieris ATCC 35243]
          Length = 319

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 44/284 (15%), Positives = 93/284 (32%), Gaps = 32/284 (11%)

Query: 85  GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHTPSS--------A 133
              + ++  +++    + +      G     ++T   +   V +     +S         
Sbjct: 28  RGASPHTIAAYQRDLQRYVAYLQILGRDTLAQVTEVDLEGFVRALGDGFASFPPLGSTSV 87

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG---- 189
            + L + R   ++      +  N   SV+  K         + E+M+   +  S      
Sbjct: 88  RRCLAAARSWHRYLFDSGSLGANVASSVKPAKLPRRLPETLSLEEMEALLAAASSPGDSN 147

Query: 190 -SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELP-----DGF 241
             + R   EFL  SG R S++    +  +        ++    G    + +         
Sbjct: 148 SLRDRALLEFLYASGARISEAMNLVLDDIDFETEPALVRLFGKGRKERISMLGHQACQAL 207

Query: 242 MKLL-AMTPI------GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292
              L  + P        +   F+N   + M+        +A A +A +++    H +R  
Sbjct: 208 QAYLVRVRPTLAEKGQSRGRVFLNTYGKPMSRQTAWAIIQAAAKRAQIDRPVHPHTLRHC 267

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
            AT     GA    +    G  +V   E YTK + ++ L +  S
Sbjct: 268 FATHLLQGGADIRVVQELLGHASVTTTEIYTKVSKQMLLEVYAS 311


>gi|323344611|ref|ZP_08084835.1| tyrosine recombinase XerC [Prevotella oralis ATCC 33269]
 gi|323093881|gb|EFZ36458.1| tyrosine recombinase XerC [Prevotella oralis ATCC 33269]
          Length = 293

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 49/277 (17%), Positives = 101/277 (36%), Gaps = 28/277 (10%)

Query: 74  LISEYRKSAHW-GSLAVNSRISF-------ESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
           +I E+     +  + +  +  ++       ESYF +I ++           +     +  
Sbjct: 2   MIEEFLDYLRYERNRSAQTVKNYDEDLKAFESYFKKINKELSWESVDSDVIRGWMESMMD 61

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF--K 183
           + +  +S  + L+++R L+++A+ + YV  +P   V  PKR     +   + +M +    
Sbjct: 62  KGNIATSINRRLSALRSLYRFALSKGYVDSDPAYGVVGPKRAKPLPQFLKEREMDELLGL 121

Query: 184 SFWSEGSQPRLAFEFLLY---SGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPD 239
           + W +G +   A+  L+    +G+R S+        +   N     + K      +   D
Sbjct: 122 TVWKDGFKNVRAYTILIMFYETGMRLSELVGLNDSSVDFVNRQFKVSGKRNKQRLIPFGD 181

Query: 240 GFMKLLAM--------TPIGKETFFINNDKQKMNATQFSIWFK----AKATKAGVNKSAH 287
                L M             +  F+ ++ ++MN  Q     K       T     K+ H
Sbjct: 182 ELDTSLRMYLELRNESVGRKSDALFVTSEGKRMNQDQVRYEVKKNLSKVCTLK--KKTPH 239

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            +R   AT   +  A    +    G  +V   E YT 
Sbjct: 240 VLRHTFATAMLNHDANIESVRKLLGHASVGTTEVYTH 276


>gi|217963765|ref|YP_002349443.1| integrase/recombinase, putative [Listeria monocytogenes HCC23]
 gi|217333035|gb|ACK38829.1| integrase/recombinase, putative [Listeria monocytogenes HCC23]
 gi|307571661|emb|CAR84840.1| integrase/recombinase, putative [Listeria monocytogenes L99]
          Length = 314

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 38/267 (14%), Positives = 100/267 (37%), Gaps = 18/267 (6%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSG----DFDYRKITTKHIRSGVESRKH--T 129
            E+ +S    ++   +   +    + + R             ++ + +   +   K    
Sbjct: 28  QEFIRSRRIRNVRETTIQYYTDAINVLKRDREYIHVQKPIMHLSQRDLEDMIMYWKGFMR 87

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            ++    + + +  + +  +Q ++ INPC ++   + + E       +++++  + + + 
Sbjct: 88  ANTINSKIKAFKAYYNFLYQQGFIKINPCENLSLLRVREEIRETLNPDEIKKIANHFKKK 147

Query: 190 S-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
                 +  + F+ LL +G+R S++    +Q + ++   +   K      V +     + 
Sbjct: 148 ETFSSYRDLVIFQLLLDTGIRISEAVGINIQDIHSDYIIVVESKNLKQRIVYISKRMREK 207

Query: 245 L--AMTPIGKET---FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS 297
           L   +   G  +    FIN D+   N   F    +      G+ K  S H  R+  A  +
Sbjct: 208 LTSYLKIRGNLSHTKVFINRDQLPYNKNTFQQNLREARVLCGIQKQVSPHVCRRTYAKNA 267

Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324
             +G  A  L    G  +++  + Y +
Sbjct: 268 ILSGMDAFSLATLLGHSSLEVTKRYVQ 294


>gi|27467846|ref|NP_764483.1| xerC protein [Staphylococcus epidermidis ATCC 12228]
 gi|57866718|ref|YP_188400.1| tyrosine recombinase XerC [Staphylococcus epidermidis RP62A]
 gi|282876316|ref|ZP_06285183.1| tyrosine recombinase XerC [Staphylococcus epidermidis SK135]
 gi|34222792|sp|Q7ZAJ4|XERC_STAES RecName: Full=Tyrosine recombinase xerC
 gi|81674902|sp|Q5HPU0|XERC_STAEQ RecName: Full=Tyrosine recombinase xerC
 gi|27315391|gb|AAO04525.1|AE016747_22 xerC protein [Staphylococcus epidermidis ATCC 12228]
 gi|57637376|gb|AAW54164.1| tyrosine recombinase XerC [Staphylococcus epidermidis RP62A]
 gi|281295341|gb|EFA87868.1| tyrosine recombinase XerC [Staphylococcus epidermidis SK135]
 gi|329736214|gb|EGG72486.1| tyrosine recombinase XerC [Staphylococcus epidermidis VCU028]
 gi|329736604|gb|EGG72870.1| tyrosine recombinase XerC [Staphylococcus epidermidis VCU045]
          Length = 296

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 34/265 (12%), Positives = 94/265 (35%), Gaps = 20/265 (7%)

Query: 85  GSLAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
            + +  +  S+     Q              +     ++  + + S +   ++  + +++
Sbjct: 16  RNFSEYTLKSYHDDLVQFNNFLEREHLQLETFEYKDARNYLAFLYSNQLKRTTVSRKIST 75

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KSFWSEGSQPRLA 195
           +R  +++ + Q+   INP + +  PK++    + + +E+M+      +    +G + ++ 
Sbjct: 76  LRTFYEFWMTQDNSIINPFVQLVHPKKEKYLPQFFYEEEMEALFQTVEHDNKKGIRDKVI 135

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE--------LPDGFMKLLA 246
            E L  +G+R S+     ++ +  N+  +K   K      +         +     +   
Sbjct: 136 IELLYATGIRVSELINIKLKDIDMNLPGVKVLGKGNKERFIPFGEFCRQSIERYLEEFQP 195

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATK-AGV-NKSAHGVRKFSATISADAGATA 304
                 +   +N     +              + AGV +   H +R   AT   + GA  
Sbjct: 196 KQLANHDYLIVNMKGDPITERGVRYVLNDVVKRTAGVNDIHPHKLRHTFATHLLNQGADL 255

Query: 305 HELMATYGWKTVDQAETYTKGADRI 329
             + +  G   +     YT  +++ 
Sbjct: 256 RTVQSLLGHVNLSTTGRYTHVSNQQ 280


>gi|317121809|ref|YP_004101812.1| integrase family protein [Thermaerobacter marianensis DSM 12885]
 gi|315591789|gb|ADU51085.1| integrase family protein [Thermaerobacter marianensis DSM 12885]
          Length = 336

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 54/319 (16%), Positives = 102/319 (31%), Gaps = 38/319 (11%)

Query: 48  MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS 106
           MSA     P+          P     ++  Y         LAV +  ++ +     +   
Sbjct: 1   MSARGAPQPEGPGRPEAGGPPA--ADVVEAYLDHLRLERGLAVRTLEAYAADLAGWLDFL 58

Query: 107 GDFDYRKITT---------KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINP 157
           G        T         +   + ++ R    S+  + L ++R LF++AVR+ ++  +P
Sbjct: 59  GLEPPVDAATLGRVTGRDLRRWLAQLDQRGLQRSTVARKLAAVRGLFRFAVREGWIPASP 118

Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG-----SQPRLAFEFLLYSGLRCSDSCRA 212
              +  P+ +    R +T E+ +        G      + R   E L   GLR  +    
Sbjct: 119 AARLGTPRVRRRLPRVYTPEEARALLEAAGAGTGPAALRNRALLELLYGCGLRVGELSGL 178

Query: 213 GVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM------------------TPIGKE 253
            +  +      ++   K G    + L       L                     P  ++
Sbjct: 179 DLDDVDWEGGWLRVYGKGGKERILPLAGPVAAALRAYVEDGRPHLAAARGSRPCPPGDRQ 238

Query: 254 TFFINNDKQKMNATQFSIWFKAK-ATKAGVNKSAHGVRKFSATISADAGATAHELMATYG 312
             F+N    +++        +   A  A +    H +R   AT   D GA    +    G
Sbjct: 239 AVFLNRWGGRLSPRSIQAIVRKAGAVVARLEAHPHLLRHTFATHLLDGGAGLRAVQELLG 298

Query: 313 WKTVDQAETYTKGADRIRL 331
             ++   + YT    R RL
Sbjct: 299 HASLAATQIYTH-VSRARL 316


>gi|313676041|ref|YP_004054037.1| integrase family protein [Marivirga tractuosa DSM 4126]
 gi|312942739|gb|ADR21929.1| integrase family protein [Marivirga tractuosa DSM 4126]
          Length = 372

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 46/261 (17%), Positives = 86/261 (32%), Gaps = 15/261 (5%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR---SGVESRKHTPSS 132
             Y +       A+ +  ++ + FD+  R         I    I+    G+  RK++ S 
Sbjct: 103 EAYFQKLELKRYALKTAENYTACFDRFKRHFPTRKLMSIDETDIKNYLKGLAQRKYSDSF 162

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
               + S++  F + V +     N    +ERP +        +KE++    +  +   + 
Sbjct: 163 VNLSINSIK--FYYEVVEGM--PNRFYDIERPMKTERLPEILSKEEVIAMINK-TFNIKH 217

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIG 251
           +     L  SGLR  +     +  +     +I+  Q  G      +    + L       
Sbjct: 218 QCIISILYSSGLRRGELLNLKLSDIDGKRMTIRVEQGKGKKDRYSILSEKLLLKLRLYYK 277

Query: 252 K----ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAH 305
           +       F     Q  + +         A  A +NK    H +R   AT   +AG    
Sbjct: 278 QYKPTHYLFEGKKGQPYSGSSVRQIVAKAAKNANINKPVRPHMLRHSFATHLLEAGTDLR 337

Query: 306 ELMATYGWKTVDQAETYTKGA 326
            +    G  +    E YT  A
Sbjct: 338 HIQLLLGHNSTKTTEIYTHVA 358


>gi|237711591|ref|ZP_04542072.1| integrase [Bacteroides sp. 9_1_42FAA]
 gi|229454286|gb|EEO60007.1| integrase [Bacteroides sp. 9_1_42FAA]
          Length = 380

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 49/252 (19%), Positives = 93/252 (36%), Gaps = 27/252 (10%)

Query: 101 QIIRKSGDFDYRKITTKHIRSGVESRKHT----------PSSAIQFLTSMRVLFKWAVRQ 150
            +++   D   R +  +     ++  + +          P +A  + T++R     AVR+
Sbjct: 123 NLLKFRADARLRDLDKQFYLDYIDWLRSSCKTAWGKPVSPKTAHSYYTTLRTALNEAVRE 182

Query: 151 EYVAINP------CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGL 204
           + +  NP         ++ P+ K +     T E++++  +        R A+ F  + GL
Sbjct: 183 KLIESNPWYKLEMTEKIKVPESKRD---FLTIEEIKKMIATPFFNEHVRQAYLFSCFCGL 239

Query: 205 RCSDSCRAGVQHL---QNNIF-SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINND 260
           R SD  +   + +         S+   KT   + + L    +K L           +   
Sbjct: 240 RISDIRKLRWRDISISGGQWLVSVVMTKTTNPVYIPLSSQAVKWLPERKDCAPEDLV--F 297

Query: 261 KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
               NA    I  K  A KAGV K  + H  R   A +    GA  + +    G ++V  
Sbjct: 298 GGLPNAGNLCISLKNWADKAGVKKNVTFHTARHSCAVLLLTLGADIYTVSKILGHRSVRA 357

Query: 319 AETYTKGADRIR 330
            + Y K  D+ +
Sbjct: 358 TQVYAKIVDKKK 369


>gi|262404865|ref|ZP_06081419.1| tyrosine recombinase XerC [Vibrio sp. RC586]
 gi|262348949|gb|EEY98088.1| tyrosine recombinase XerC [Vibrio sp. RC586]
          Length = 310

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 35/268 (13%), Positives = 91/268 (33%), Gaps = 22/268 (8%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGV---ESRKHTP 130
            Y  S     L++ ++ +++   +   + + + G   + ++    +R  V   + +    
Sbjct: 22  AYLHSE--KGLSLYTQRNYKQQLETMARYLAQVGLTSWPQLDAAWVRQLVVLGKRQGMKA 79

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---S 187
           SS    L+S+R    + + +  +  NP   V  P+++    +    ++M Q         
Sbjct: 80  SSISTRLSSLRSFLDFLILRGELQANPAKGVSAPRKQRPLPKNLDVDEMAQLLEVTDDDP 139

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVE-------LP 238
              + R   E +  SGLR ++     V+ +  ++    +  +                + 
Sbjct: 140 LSIRDRAIMELMYGSGLRLAELVSIDVKDVNLRDGEIRVIGKGNKERKVWFAGQAQEWVG 199

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATI 296
           +       +    +   F++    +++             K  V  + S H +R   AT 
Sbjct: 200 NWLKLRSQLANSDETALFVSKLGTRISHRSVQKRMAEWGQKQAVASHISPHKLRHSFATH 259

Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324
             ++      +    G + +   + YT 
Sbjct: 260 MLESSNNLRAVQELLGHENIATTQIYTH 287


>gi|253566649|ref|ZP_04844102.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5]
 gi|251944821|gb|EES85296.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5]
          Length = 293

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 44/275 (16%), Positives = 99/275 (36%), Gaps = 24/275 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIR----KSGDFDYRKITTKHIRSGV---ES 125
           L   +     +  + +  + +++     Q+      +   FD  ++  + +R  +     
Sbjct: 2   LTDSFLDYLRYERNYSEKTVLAYGEDISQLREFAQERMEKFDPAEVKPELVREWIVSLMD 61

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           + +T +S  + L+S+R  +K+ +RQ  V+++P   +  PK K        + +M +    
Sbjct: 62  QGYTSTSVNRKLSSLRSFYKYLLRQGEVSVDPLRKITGPKNKKPLPSFLKESEMNKLLDD 121

Query: 186 WS-----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPD 239
                  +G + RL  E    +G+R S+      + +  +   +K T K      +   D
Sbjct: 122 TDFGEGLKGCRDRLIIEMFYATGMRLSELIGLDDKDVDFSASLLKVTGKRNKQRLIPFGD 181

Query: 240 GFMKLL--------AMTPIGKETFFINNDKQKMNATQFSIWFKA--KATKAGVNKSAHGV 289
              + +         M     + FF+  + +++         K           +S H +
Sbjct: 182 ELKETMLEYVDIRNEMISGRSDAFFVRENGERLYKNLVYNLVKRNLSKVVTLKKRSPHVL 241

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           R   AT   +  A    +    G  ++   E YT 
Sbjct: 242 RHTFATTMLNNDAELGAVKELLGHSSLATTEIYTH 276


>gi|182415361|ref|YP_001820427.1| integrase family protein [Opitutus terrae PB90-1]
 gi|177842575|gb|ACB76827.1| integrase family protein [Opitutus terrae PB90-1]
          Length = 324

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 49/278 (17%), Positives = 94/278 (33%), Gaps = 29/278 (10%)

Query: 82  AHWGSLAVNSRISFESYFDQIIR---KSG--DFDYRKITTKHIRSGV--ESRKHTPSSAI 134
           AH    +  +  ++   F+   R    +G  +  +  +  + +R  V    R+    +  
Sbjct: 37  AHERRYSAYTVRNYRQAFEDFYRWLVLAGVWERGFDALQMRELRDFVIEAQRRFGRRTLH 96

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE------ 188
             ++ +R  FK+ +R+  V  NP L V  PK +    +  T+E M +  +   +      
Sbjct: 97  NHVSGLRSFFKFWLRRGKVQRNPFLGVPLPKLEKRLPKFLTEEQMVRLLAGPQQLLASES 156

Query: 189 -----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT--------IITV 235
                  + RL  E L  +GLR S+        +       +    G          + V
Sbjct: 157 IDAFTAHRDRLVLELLYGAGLRVSELTGLNYGAIDLEAGVARIVGKGRKERLCPIGRVAV 216

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293
            +   F    A          +     +M+  +  +  K     A +  + + H +R   
Sbjct: 217 AVLRKFRDEFAPATAPDAPVIVTQRGTRMSPREVQLMLKRYLALAELPMDLTPHKLRHSY 276

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           AT   +AGA    +    G   +   + YT      RL
Sbjct: 277 ATHLLNAGADLRLVQELLGHAQLATTQVYTH-VSVARL 313


>gi|126175915|ref|YP_001052064.1| phage integrase family protein [Shewanella baltica OS155]
 gi|125999120|gb|ABN63195.1| phage integrase family protein [Shewanella baltica OS155]
          Length = 376

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 58/319 (18%), Positives = 111/319 (34%), Gaps = 17/319 (5%)

Query: 23  YYFR---KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYR 79
           YY R   +G  +   +   ++ T   A + A       R  +        TL     E+ 
Sbjct: 43  YYVRFQYQGLRQLHVIGNANDITLDDARLEARKHIDALRYGVVREPAPSLTLCAFAEEFF 102

Query: 80  KSAHWGS-LAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFL 137
               +      ++ ++ +  F   I    GD     +T +HI    +    +   A + L
Sbjct: 103 --PRYARHWKPSTLLNSQRGFTRHIAPVLGDVPLAALTRQHIEQWFDGMHASKGMANRLL 160

Query: 138 TSMRVLFKWAVRQEY--VAINPCLSVERPKRKTEGIRPWTKEDMQ----QFKSFWSEGSQ 191
             + V+ + A   EY     NPC   +R K  T   R  ++E+++       S       
Sbjct: 161 PLLSVMMQQAEVYEYRPAQSNPCKGFKRYK-STHSERYLSEEELKRLWLALDSHEKASPV 219

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP-I 250
             +    L+ +G RC++ C       +   + +   KTG   TV L     +LL+  P +
Sbjct: 220 AVMVLRLLILTGCRCNEVCSVKWADYRQGHWYLPDSKTGAK-TVFLSSFARELLSDWPQV 278

Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMA 309
            +  F+  +  Q     +   +++       + +   H +R   A+I+         +  
Sbjct: 279 SEHLFWHQSPSQPFTPARLDRFWRPFRETIHLNDVRIHDLRHTYASIAVKHNINILTIGR 338

Query: 310 TYGWKTVDQAETYTKGADR 328
             G    +    YT  A R
Sbjct: 339 LLGHALPETTLKYTHLAKR 357


>gi|90961925|ref|YP_535841.1| XerC/CodV family integrase/recombinase [Lactobacillus salivarius
           UCC118]
 gi|90821119|gb|ABD99758.1| Integrase/recombinase, XerC/CodV family [Lactobacillus salivarius
           UCC118]
 gi|300214646|gb|ADJ79062.1| Integrase/recombinase, XerC/CodV family [Lactobacillus salivarius
           CECT 5713]
          Length = 298

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 38/265 (14%), Positives = 91/265 (34%), Gaps = 25/265 (9%)

Query: 85  GSLAVNSRISF----ESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT--PSSAIQFLT 138
              +  +  ++    + + D I    G   +++I +  + + +         +S  + ++
Sbjct: 17  KQYSDETLKAYSEDLQHFVDFIDETGGAKSFKEIGSNDVHAYMSYLYDRYEMTSISRMIS 76

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRL 194
           S+R  + + ++ E    NP   V+  +      R + +++M          +    + R 
Sbjct: 77  SLRAFYNFLIKNELTDENPFAYVQLKRHPRSLPRFFYEKEMTALFEATEGDTQMLIRDRA 136

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAM------ 247
             E L  +G+R S+     ++++   N   +   K      V       + L        
Sbjct: 137 LLESLYGTGMRVSECTGLKMENVDLTNKKMLLHGKGDKDRLVPFGSYCQEALQRYFEQTR 196

Query: 248 TP------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISAD 299
           TP         +  F+N+    +     +   K    ++ ++ S   H +R   AT    
Sbjct: 197 TPLMEKYHRDHDLVFVNHYGNPLTPAGVAYILKQIVKRSSLHTSIHPHELRHTFATHLMS 256

Query: 300 AGATAHELMATYGWKTVDQAETYTK 324
            GA    +    G  ++   + YT 
Sbjct: 257 NGADLRAVQELLGHSSLSTTQIYTH 281


>gi|24376272|ref|NP_720380.1| phage integrase family site specific recombinase [Shewanella
           oneidensis MR-1]
 gi|24344844|gb|AAN52980.1|AE015912_5 site-specific recombinase, phage integrase family [Shewanella
           oneidensis MR-1]
          Length = 376

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 59/319 (18%), Positives = 111/319 (34%), Gaps = 17/319 (5%)

Query: 23  YYFR---KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYR 79
           YY R   +G  +   +   ++ T   A + A       R  + S      TL     E+ 
Sbjct: 43  YYVRFQYQGLRQLHVIGNANDITLDDARLEARKHIDALRYGVVSEPVPSLTLCAFAEEFF 102

Query: 80  KSAHWGS-LAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFL 137
               +      ++ ++ +  F   I    GD     +T +HI    +    +   A + L
Sbjct: 103 --PRYARHWKPSTLLNSQRGFTRHIAPVLGDVPLAALTRQHIEQWFDGMHASKGMANRLL 160

Query: 138 TSMRVLFKWAVRQEY--VAINPCLSVERPKRKTEGIRPWTKEDMQ----QFKSFWSEGSQ 191
             + V+ + A   EY     NPC   +R K  T   R  ++E+++       S       
Sbjct: 161 PLLSVMMQQAEVYEYRPAQSNPCKGFKRYK-STHSERYLSEEELKRLWLALDSHEKASPV 219

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP-I 250
             +    L+ +G RC++ C       +   + +   KTG   TV L     +LL+  P +
Sbjct: 220 AVMVLRLLILTGCRCNEVCSVKWADYRQGHWYLPDSKTGAK-TVFLSSFARELLSDWPQV 278

Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMA 309
            +  F+  +  Q         +++       + +   H +R   A+I+         +  
Sbjct: 279 SEHLFWHQSPSQPFTPACLDRFWRPFRETIHLNDVRIHDLRHTYASIAVKHNINILTIGR 338

Query: 310 TYGWKTVDQAETYTKGADR 328
             G    +    YT  A R
Sbjct: 339 LLGHALPETTLKYTHLAKR 357


>gi|294791028|ref|ZP_06756186.1| tyrosine recombinase XerD [Scardovia inopinata F0304]
 gi|294458925|gb|EFG27278.1| tyrosine recombinase XerD [Scardovia inopinata F0304]
          Length = 318

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 40/270 (14%), Positives = 88/270 (32%), Gaps = 30/270 (11%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKI------TTKHIRSGVESRKHTPSSAIQFLT 138
             LA  +  ++ES   + +                   +   + +     +  S  + L 
Sbjct: 31  RGLAAATVKAYESDLIKYVSWLTHKKVTDPGQISQQNVEDFVASLSLAGESQKSIARRLA 90

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF-------KSFWSEGSQ 191
           S+    ++   +  +  +   +V+ PK         T +++ +        +       +
Sbjct: 91  SIHEYHRYLSSRGQIQTDVSQTVKPPKAAAHLPDVLTIDEVSRMMEMTSTERDTDPVILR 150

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVEL------------- 237
            R   EFL  +G R S++    +  L  ++  +    K      V L             
Sbjct: 151 DRALLEFLYATGARVSEAVGLNMTDLDLDSRCARLMGKGSKQRLVPLGSYACSALNRYLH 210

Query: 238 -PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSA 294
            P  +++  A +       F+N   ++++        +A A +A ++K    H +R   A
Sbjct: 211 GPRQYLQDKARSGPELRAVFLNKRGKRLSRQSVWEIVQAAANRAHISKEVHPHTLRHSCA 270

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324
           T     GA    +    G  +V   + YT 
Sbjct: 271 THLIRGGADVRTVQELLGHASVTTTQLYTH 300


>gi|146297605|ref|YP_001181376.1| phage integrase family protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145411181|gb|ABP68185.1| phage integrase family protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 286

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 46/284 (16%), Positives = 103/284 (36%), Gaps = 25/284 (8%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--------DYRKITTKHIRSGVESRK 127
            EY K+  +     N+  S+    +  +R   D         +  +      +S +  + 
Sbjct: 6   EEYLKTQDFT---ENTIKSYTKDVELFMRWYVDTTGQEFLPENLTEFDLVEYKSYLLRKN 62

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE--GIRPWTKEDMQQFK-S 184
           H PS+  + + S+R    + + +  +  +    +++ K  T         K+D+ +F+ +
Sbjct: 63  HKPSTVNRSIISLRKFVHFLLDRGLLNKDISTRLKQVKDTTRNLSPVVLDKKDIYKFRRT 122

Query: 185 FWSEG-SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK-TQKTGTIITVELPDG 240
               G ++     E LL +G+R S++    ++ ++       +K   K  +   V L   
Sbjct: 123 VHQFGKTRDVALVELLLNTGMRISEAINLKLEDVEISERKGKVKIWGKGRSYREVPLNSD 182

Query: 241 ----FMKLLAMTP-IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSAT 295
                 + L   P       F+ +  +K+         +  A  AG+    H +R F A 
Sbjct: 183 ARKYLSEYLKKRPYSETNYLFVTSTGKKLTRNSAYKIIQKYAKLAGLCLHPHMLRHFFAQ 242

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
              D G   +++    G + ++    Y K     +L  +    +
Sbjct: 243 TLIDKGLNIYDVQQLLGHQRIETTLRYKKP--NTKLQEEMVENL 284


>gi|291485998|dbj|BAI87073.1| hypothetical protein BSNT_05256 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 329

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 44/268 (16%), Positives = 85/268 (31%), Gaps = 26/268 (9%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDFD---YRKITTKHIRS----GVESRKHTPSSAIQFLT 138
           +    +   +  Y+ + +  +G         IT  H+RS     +  R  +P +    L 
Sbjct: 44  NYRERTINDYRKYWSEFMEVAGIQPTDNITDITEDHLRSYISTMLNVRDLSPVTINIRLG 103

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRL 194
            ++ +     ++  +  NP   V + +   + I+  T   +++F          G +  +
Sbjct: 104 GIKSILSRMTKRGLINENPAKRVTKLRVDEKTIKMLTDSQVRRFFKMIDKDTFPGFRDYV 163

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSI----KTQKTGTIITVELPDGFMKLLAMTPI 250
           AF   L  GLR ++      + +  +   I       K      V + +   + L     
Sbjct: 164 AFLIALKCGLRSNELEGLKPEDIDFDNLVIMLPGAVNKNRKNRMVPMTEQVAEELRQLLT 223

Query: 251 ------GKET-FFINNDKQKMNATQFSIWFKAKATKAGVNK----SAHGVRKFSATISAD 299
                 G  T  F+N   +K+               A + K    S H +R   A     
Sbjct: 224 EMTEYFGTFTHVFVNQYGEKIAKDHLRKRAAKYGEMADLKKECRPSLHSLRHTFAINYLR 283

Query: 300 AGATAHELMATYGWKTVDQAETYTKGAD 327
            G+    L    G   +   E Y    D
Sbjct: 284 NGSDIRSLQKIMGHADLASTEIYLDYVD 311


>gi|309807963|ref|ZP_07701891.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 01V1-a]
 gi|308168814|gb|EFO70904.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 01V1-a]
          Length = 166

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 53/160 (33%), Gaps = 15/160 (9%)

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVEL 237
           +    +    G + R   E L  +G+R S+        +   +  IK   K      + +
Sbjct: 2   INMPDTTTDLGIRDRAILETLYATGMRVSEVINLNEDSIHEELHLIKVFGKGSKQRLIPI 61

Query: 238 PDGFMKLLAMTPIG------------KETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284
            +  M  +    I             ++  F+N+   K+         K     AG+NK 
Sbjct: 62  SNVAMSWIKKYQITVRNKTLLESGKFEKAIFLNSRGGKITRQAVWQMIKRYCQLAGINKN 121

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
            + H +R   AT   + GA    +    G   +   + YT
Sbjct: 122 VTPHTLRHTFATHLLENGADLRIVQEILGHSDISTTQIYT 161


>gi|240139059|ref|YP_002963534.1| Tyrosine recombinase xerD [Methylobacterium extorquens AM1]
 gi|240009031|gb|ACS40257.1| Tyrosine recombinase xerD [Methylobacterium extorquens AM1]
          Length = 328

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 44/273 (16%), Positives = 85/273 (31%), Gaps = 28/273 (10%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
              A N+  ++    D  +    +      + +    +   + +E R    SSA + L+ 
Sbjct: 27  RGAAANTLAAYRRDLDDYLGYLAEGGIDPEEAQAEQVRAYIASLEPRGLKASSAARRLSC 86

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP------- 192
           +R   ++   + Y   +P   V  P+R     +  +  ++ +  +   E  +        
Sbjct: 87  IRGFHRFLYAEGYSETDPTAPVAAPRRAKGLPKVLSVAEVDRLLATARERVEAAGDDRAE 146

Query: 193 -------RLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKL 244
                      E L  +GLR S+              + +   K G    V L D   + 
Sbjct: 147 ARAAARMLCLLELLYATGLRVSELVALPRSAAATRERYLVVKGKGGRERLVPLTDLAREA 206

Query: 245 LAM-----TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATI 296
           +       T  G   F   ++   +    F+   K  A  A +     S H +R   A+ 
Sbjct: 207 MRTHVAHLTAEGSWLFPAESESGHLTRQAFARDLKTAAAAADLRTDRVSPHVLRHAFASH 266

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRI 329
               GA    +    G   +   + YT   D  
Sbjct: 267 LLQNGADLRIVQELLGHADISTTQIYTHVLDER 299


>gi|251810683|ref|ZP_04825156.1| tyrosine recombinase XerC [Staphylococcus epidermidis BCM-HMP0060]
 gi|293366784|ref|ZP_06613460.1| tyrosine recombinase XerC [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|251805843|gb|EES58500.1| tyrosine recombinase XerC [Staphylococcus epidermidis BCM-HMP0060]
 gi|291319085|gb|EFE59455.1| tyrosine recombinase XerC [Staphylococcus epidermidis
           M23864:W2(grey)]
          Length = 286

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 34/265 (12%), Positives = 94/265 (35%), Gaps = 20/265 (7%)

Query: 85  GSLAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
            + +  +  S+     Q              +     ++  + + S +   ++  + +++
Sbjct: 6   RNFSEYTLKSYHDDLVQFNNFLEREHLQLETFEYKDARNYLAFLYSNQLKRTTVSRKIST 65

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KSFWSEGSQPRLA 195
           +R  +++ + Q+   INP + +  PK++    + + +E+M+      +    +G + ++ 
Sbjct: 66  LRTFYEFWMTQDNSIINPFVQLVHPKKEKYLPQFFYEEEMEALFQTVEHDNKKGIRDKVI 125

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE--------LPDGFMKLLA 246
            E L  +G+R S+     ++ +  N+  +K   K      +         +     +   
Sbjct: 126 IELLYATGIRVSELINIKLKDIDMNLPGVKVLGKGNKERFIPFGEFCRQSIERYLEEFQP 185

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATK-AGV-NKSAHGVRKFSATISADAGATA 304
                 +   +N     +              + AGV +   H +R   AT   + GA  
Sbjct: 186 KQLANHDYLIVNMKGDPITERGVRYVLNDVVKRTAGVNDIHPHKLRHTFATHLLNQGADL 245

Query: 305 HELMATYGWKTVDQAETYTKGADRI 329
             + +  G   +     YT  +++ 
Sbjct: 246 RTVQSLLGHVNLSTTGRYTHVSNQQ 270


>gi|162147966|ref|YP_001602427.1| putative tyrosine recombinase xerD [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209542583|ref|YP_002274812.1| integrase family protein [Gluconacetobacter diazotrophicus PAl 5]
 gi|161786543|emb|CAP56125.1| putative tyrosine recombinase xerD [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209530260|gb|ACI50197.1| integrase family protein [Gluconacetobacter diazotrophicus PAl 5]
          Length = 304

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 49/287 (17%), Positives = 92/287 (32%), Gaps = 25/287 (8%)

Query: 85  GSLAVNSRISFESYFDQII---RKSGDF--DYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
              A N+  ++    D      R++G    D      +     +     +P +  + L+ 
Sbjct: 16  RGAAANTLKAYGRDLDDFAAHARQAGRSLHDADSALLRDYMGSLARAGLSPRTQARRLSC 75

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ-------- 191
           ++    +  R+     NP   ++ P+      R  T++++    +               
Sbjct: 76  LKQFHLFLAREGVRQDNPAELLDTPRLPATLPRFLTEDEVDALLAACVPPPDGGAARRWL 135

Query: 192 -PRLAFEFLLYSGLRCSDSCRAGVQHL-QNNIFSIKTQKTGTIITVELPDGFMKLLAMT- 248
             R A E L  SGLR S+      + L ++    +   K G    V L            
Sbjct: 136 VARAALEMLYASGLRISELLALPRRGLGRDAQMLMVRGKGGRERLVPLSAAARAAAEALI 195

Query: 249 ----PIGKETFFI-NNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADA 300
               P      F      + +    F       A +AG++    S H +R   AT     
Sbjct: 196 AHDGPRRSPYLFPGRAPDRPLTRQGFDRILHDVALRAGLDPARLSPHVLRHSFATHMLAR 255

Query: 301 GATAHELMATYGWKTVDQAETYTKG-ADRIRLGIKNSRRISSVVDSD 346
           GA    L    G   +   + YT   A+R+R  ++    ++   D +
Sbjct: 256 GADLRALQVLLGHADIATTQIYTHVLAERLRQAVEAYHPLARGGDGE 302


>gi|41407506|ref|NP_960342.1| site-specific tyrosine recombinase XerD [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41395859|gb|AAS03725.1| hypothetical protein MAP_1408 [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 313

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 43/274 (15%), Positives = 83/274 (30%), Gaps = 35/274 (12%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH----IRSGVESRKHTPSS-------- 132
             +A N+  S+     +  +   D     +            V  R+  P +        
Sbjct: 21  RGVAANTLSSYRRDLRRYTKHLSDRGISDLAKVGEDDVSEFLVALRRGDPDTGAAALSAV 80

Query: 133 -AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----- 186
            A + L ++R L ++   +    ++   +V  P       +  T + +            
Sbjct: 81  SAARALIAVRGLHRFLAAEGLAELDVARAVRPPTPGRRLPKSLTIDQVLALLEAAGGESP 140

Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFM 242
                  + R   E L  +G R S++    V  +       +   K G    V +    +
Sbjct: 141 ADGPLTLRNRALLELLYSTGARISEAVGLDVDDVDTQARSVLLRGKGGKQRLVPIGRPAV 200

Query: 243 KLL-----------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGV 289
             L           A    G    F+N    +++        +  A +AG+    S H +
Sbjct: 201 AALDAYLVRGRWELARRGRGTPAIFLNVRGGRLSRQSAWQVLQDAAERAGITSGVSPHML 260

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           R   AT   + GA    +    G  +V   + YT
Sbjct: 261 RHSFATHLLEGGADVRVVQELLGHASVTTTQIYT 294


>gi|303247551|ref|ZP_07333822.1| integrase family protein [Desulfovibrio fructosovorans JJ]
 gi|302491031|gb|EFL50925.1| integrase family protein [Desulfovibrio fructosovorans JJ]
          Length = 413

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 49/306 (16%), Positives = 100/306 (32%), Gaps = 22/306 (7%)

Query: 52  TGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFD 110
                +         +  T  ++           +   N+  + +  F + +    GD  
Sbjct: 85  AREEAEAREKAVQEAEAVTFGFIFEGVYLEHARQNKKPNTVQTEQGLFRKWLGPVIGDVP 144

Query: 111 YRKITTKH---IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA-INPCLSVERPKR 166
            + I+  H   IR  + +   +  SA   L  +R +F +A   +    ++P   V+ PK 
Sbjct: 145 LKDISPFHLERIRKNIAAAGLSARSAHYALCVVRQVFNFARDHDMTDCVSPTCKVKAPKT 204

Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL-LYSGLRCSDSCRAGVQHLQ--NNIFS 223
               +R  T E+  +     ++ S    A   + L+ GLR  +        +       +
Sbjct: 205 DNRRLRFLTHEEADKLLEHVAKRSHELHAISLVSLHCGLRAGEIFNLTWSDVDFDRETLT 264

Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGK--ETFFINNDKQKMNATQFSIWFKAKATKAG 281
           ++  K G      +      +LA    G   +  F      + +    S  F+      G
Sbjct: 265 LRDTKNGRTRIAYMTGQVRGMLAARVKGGPGDPVFPGRGGVRRSY--VSNAFERAVKDLG 322

Query: 282 VNKSA---------HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRL 331
            N+           H +R   A+   + G   + +    G +T+   E Y+    D +R 
Sbjct: 323 FNEGITDSRQKVVFHSLRHTFASWLVEQGTDLYSVKELMGHRTLSMTERYSHLSPDSLRR 382

Query: 332 GIKNSR 337
            +K   
Sbjct: 383 AVKGLE 388


>gi|320321496|gb|EFW77605.1| hypothetical protein PsgB076_27145 [Pseudomonas syringae pv.
           glycinea str. B076]
          Length = 319

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 56/294 (19%), Positives = 104/294 (35%), Gaps = 44/294 (14%)

Query: 79  RKSAHWGSLA--------------VNSRISFESYFDQIIRKSGDF---DYRKITTKHI-- 119
             SA +  LA                +R ++++  +      G     ++R +T  H+  
Sbjct: 15  LTSAEFQQLASVPAAVEWFANIDNPRTRRAYQNDLEDFCSFVGLTGADEFRAVTRAHVLA 74

Query: 120 -RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKT-EGIRPWTK 176
            R+ +E+R    ++  + L ++  LF   +        NP   V+RPK +T EG  P   
Sbjct: 75  WRAQLETRGLAGATIRRKLAALASLFDHLLENNAVAGGNPVHGVKRPKIETNEGKTPALG 134

Query: 177 ED-----MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKT 229
           +D     +    +   +G + R     LLY GLR  ++ R     L  +  I  ++    
Sbjct: 135 DDQAKRLLDAPDTETVKGVRDRAILAVLLYHGLRREEAARLTTSDLVERRGIKHLRVHGK 194

Query: 230 GTII-TVELPD-------GFMKLLAMTPIGKETFFINNDKQ----KMNATQFSIWFKAKA 277
           G  I  + L          +++L +         F +   +     + A          A
Sbjct: 195 GKKIRFLPLHPVAAERIYAYLELDSARDTSSGPLFRSVRGKTTGAGVTANGLYTVVAHWA 254

Query: 278 TKAGV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
             AG+       HG+R  +AT + D  A   ++    G   +     Y +   R
Sbjct: 255 RVAGIEVDGLGVHGLRATAATNALDHDADIAKVQMWLGHANISTTRLYDRRGQR 308


>gi|307245328|ref|ZP_07527416.1| Predicted phage integrase family protein [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307254281|ref|ZP_07536121.1| Predicted phage integrase family protein [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307258741|ref|ZP_07540473.1| Predicted phage integrase family protein [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306853669|gb|EFM85886.1| Predicted phage integrase family protein [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306862760|gb|EFM94714.1| Predicted phage integrase family protein [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306867092|gb|EFM98948.1| Predicted phage integrase family protein [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
          Length = 311

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 53/252 (21%), Positives = 88/252 (34%), Gaps = 18/252 (7%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSGVESRKHTPSSAIQFLTSMRVLFK 145
           A N+R S       + +  GD   +  +I  +HI+  ++ RK TP+ A   +     ++ 
Sbjct: 53  AKNTRQSNLQAIGWLCKFFGDPPIQLERIEPQHIKQYLQWRKDTPAVANIEVGLFNTIWN 112

Query: 146 WAVRQEYVA-INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGL 204
            A    Y    +P   V++   K   I       +++   F  E        E     G 
Sbjct: 113 SAREWGYTTLSSPSQGVKKFPTKYREIYV-EDYILEKIYEFADERMAD--IIETAYLLGQ 169

Query: 205 RCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL-AMTPIGKETFFINNDKQK 263
           R  D C     H+ N I  I  QKTG  +  E+     ++L      G +  F N   +K
Sbjct: 170 RPIDICNIHRSHIYNGILHITQQKTGKKVRFEISGRLKEILDRRLQDGSDFIFTNKWGRK 229

Query: 264 MNATQFSIWFKAKATKA---------GVNK-SAHGVRKFSATISADAGATAHELMATYGW 313
           +        FK    KA          + K     +R  +AT  +   AT  +     G 
Sbjct: 230 LERRILGNHFKEIREKAMNAYPELADEIGKVQMRDMRAKAATDISLT-ATDEQAQKQLGH 288

Query: 314 KTVDQAETYTKG 325
            +    + Y + 
Sbjct: 289 TSKRMTQHYIRK 300


>gi|312135654|ref|YP_004002992.1| integrase family protein [Caldicellulosiruptor owensensis OL]
 gi|311775705|gb|ADQ05192.1| integrase family protein [Caldicellulosiruptor owensensis OL]
          Length = 310

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 40/279 (14%), Positives = 89/279 (31%), Gaps = 20/279 (7%)

Query: 64  PRKKPTTLKW--LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121
           P++    L W   + ++         +  +   +E +     +   +  + +   K    
Sbjct: 2   PKRSIVKLDWQEALQQFLFFKRAVGRSELTLRDYEYHITHFFKLYPNCFHDEQQLKKCLL 61

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM-Q 180
              S+   P++    LT ++  FKW V +  +  NP   +  PK+K EG       ++ +
Sbjct: 62  EYLSQPVKPATYNLRLTYLKAFFKWCVEENILKSNPLEGL--PKKKAEGRIVNIDTEILE 119

Query: 181 QFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI----KTQKTGTI 232
           +      +    G +        L +G+R  ++    ++H       +       KT   
Sbjct: 120 KLLKLPDKNTFCGLRDYALILLTLDTGIRPKEAFSLLIEHFDFKTLQVFIPSDAAKTRVS 179

Query: 233 ITVELPDGFMKLLAMTPI-------GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS 285
             + +       +             K   F     + +    +    +  + K GV   
Sbjct: 180 RVLPILPVTANAVKKLIAVRHPEWDDKVPVFCTVTGRPLTRDIWHDRMEMYSKKLGVKIR 239

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            + +R   A +    G     L  T G  T++  + Y  
Sbjct: 240 PYDLRHTFALLYLKNGGYELSLQKTLGHTTLEMTKRYVH 278


>gi|301299347|ref|ZP_07205632.1| tyrosine recombinase XerC [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300853087|gb|EFK80686.1| tyrosine recombinase XerC [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 298

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 40/266 (15%), Positives = 90/266 (33%), Gaps = 27/266 (10%)

Query: 85  GSLAVNSRISF----ESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT--PSSAIQFLT 138
              +  +  ++    + + D I    G   +++I +  + + +         +S  + ++
Sbjct: 17  KQYSDETLKAYSEDLQHFVDFIDETGGAKSFKEIGSNDVHAYMSYLYDRYEMTSISRMIS 76

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRL 194
           S+R  + + ++ E    NP   V+  +      R + +++M          +    + R 
Sbjct: 77  SLRAFYNFLIKNELTDENPFAYVQLKRHPRSLPRFFYEKEMTALFEATEGDTQMLIRDRA 136

Query: 195 AFEFLLYSGLRCSDS--CRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM----- 247
             E L  +G+R S+    + G   L N    +   K      V       + L       
Sbjct: 137 LLESLYGTGMRVSECTGLKMGNVDLTNKKMLLH-GKGDKDRLVPFGSYCQEALQRYFEQT 195

Query: 248 -TP------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISA 298
            TP         +  F+N+    +     +   K    ++ ++ S   H +R   AT   
Sbjct: 196 RTPLMEKYHRDHDLVFVNHYGNPLTPAGVAYILKQIVKRSSLHTSIHPHELRHTFATHLM 255

Query: 299 DAGATAHELMATYGWKTVDQAETYTK 324
             GA    +    G  ++   + YT 
Sbjct: 256 SNGADLRAVQELLGHSSLSTTQIYTH 281


>gi|116255003|ref|YP_770838.1| putative integrase/recombinase [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115259651|emb|CAK11632.1| putative integrase/recombinase [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 288

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 36/253 (14%), Positives = 91/253 (35%), Gaps = 15/253 (5%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRK--ITTKHIRSGVESRKHTPSSAIQFLTSMRV 142
            +L+  ++ S+     +  R  G    R      +  +  + S   +  +  Q + ++R 
Sbjct: 20  RNLSPATQRSYLHAVTKFSRYFGRSPDRLGLEDVRAFQVHLVSSGLSWPALNQTVCALRF 79

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202
            F   +    +       +   +   +       +++ +F        + R A      +
Sbjct: 80  FFGVTLGHGEIP----ERIAYARTPAKLPTILNGDEIVRFLEAVPS-LRTRTALTTAYAA 134

Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQ--KTGTIITVELPDGFMKLLAM-TPIGKETFFI-- 257
           GLR S++    V+ +      I+ +  K G    V L    + +L +   + +   ++  
Sbjct: 135 GLRASEAVHLKVRDIDGERGIIRVEHGKGGKDRNVMLSAQLLAILRVYWRLARPEVWLFP 194

Query: 258 -NNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWK 314
             ++ + ++        ++  T AG++K  + H +R   AT   ++G     +    G  
Sbjct: 195 GRDETKPIDVQVLYSACRSACTAAGIDKRVTVHTLRHSFATHLLESGTDIRIIQVLLGHN 254

Query: 315 TVDQAETYTKGAD 327
            +     YTK ++
Sbjct: 255 NLSTTARYTKVSN 267


>gi|56964041|ref|YP_175772.1| site-specific tyrosine recombinase [Bacillus clausii KSM-K16]
 gi|56910284|dbj|BAD64811.1| site-specific tyrosine recombinase [Bacillus clausii KSM-K16]
          Length = 300

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 42/242 (17%), Positives = 90/242 (37%), Gaps = 21/242 (8%)

Query: 109 FDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168
            D +    +   S +  +K+   S  + L+++R   K+ + + +++ NP L    PK+KT
Sbjct: 50  KDVKHQDVRLFISELVDKKYARKSIARKLSALRSFGKFLMEEGHISENPFLHTHLPKQKT 109

Query: 169 EGIRPWTKEDMQ----QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
                  +E+M+       +      + +   E L  +G+R S+     +        ++
Sbjct: 110 RLPTFLYEEEMEHWLLALPANKPLEKRDKAIIELLYATGMRVSECSMLALDQWDRVSETV 169

Query: 225 KTQKTG-------------TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI 271
           +    G             + +   + +   KLL          F+N     ++      
Sbjct: 170 RVFGKGRKERYVPVGKMAVSAVESYIHEARPKLLRANDP-TSHLFLNYRGGALSDRSIRK 228

Query: 272 WFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             + +  +A + K  S H +R   AT   +AGA    +    G +++   + YT    + 
Sbjct: 229 IVEKRLDEAAMQKKISPHAIRHSFATHLLNAGADLRAVQELLGHQSLKTTQVYTH-VSKE 287

Query: 330 RL 331
           RL
Sbjct: 288 RL 289


>gi|50123203|ref|YP_052370.1| site-specific tyrosine recombinase XerC [Pectobacterium
           atrosepticum SCRI1043]
 gi|50123212|ref|YP_052379.1| site-specific tyrosine recombinase XerC [Pectobacterium
           atrosepticum SCRI1043]
 gi|49613729|emb|CAG77180.1| probable integrase/recombinase [Pectobacterium atrosepticum
           SCRI1043]
 gi|49613738|emb|CAG77189.1| probable integrase/recombinase [Pectobacterium atrosepticum
           SCRI1043]
          Length = 350

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 53/308 (17%), Positives = 108/308 (35%), Gaps = 32/308 (10%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISF-ESYFD--QIIRKSG 107
           +T  TP         ++  TL+     Y +       +  ++ S+ E            G
Sbjct: 1   MTRPTPPSPEALYLSRQTQTLRQHTEHYLEHLSAAGYSARTQESYWERLLPFVAWCEDRG 60

Query: 108 DFDYRKITTKHI----RSGVESRKH-----TPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158
                +++   +    R     RK      T  S +  LT +R+L++W +++  +  NP 
Sbjct: 61  LLHAPQVSLAVLEGYQRWLRGYRKADGHPLTAGSQLNRLTGIRMLWRWLLKRHVILYNPA 120

Query: 159 LSVERPKRKTEGI-RPWTKED----MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG 213
             +  PK +     +  + E+    +Q  +S    G + R+  E L  SG+R +++    
Sbjct: 121 EMLTLPKEEKRLPAQVLSVEETGGVLQAMESGTVLGLRNRVILEVLWSSGVRRAEAVSLM 180

Query: 214 VQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLA----------MTPIGKETFFINNDK 261
           +  +     +  ++  K      V L +   K LA                   FI+++ 
Sbjct: 181 LSDIDLSRGVMMVRQGKGNKDRVVPLGERACKWLARYLNHARPALARRYDSGHLFISHNG 240

Query: 262 QKMNATQFSIWFKAKATKAG---VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
             +     +        + G      + H  R   AT   + GA    + A  G + ++ 
Sbjct: 241 TGLARVTLTKMAGKAIRETGHLDKPGACHVFRHSMATQMLENGADTRHIQAILGHEKLET 300

Query: 319 AETYTKGA 326
            + YT+ A
Sbjct: 301 TQIYTRVA 308


>gi|322381501|ref|ZP_08055481.1| site-specific tyrosine recombinase XerC-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321154543|gb|EFX46839.1| site-specific tyrosine recombinase XerC-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 314

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 42/261 (16%), Positives = 86/261 (32%), Gaps = 22/261 (8%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRKIT-------------TKHIRSGVESRKHTPSS 132
            L   +   + S     I      +Y++               T++  +  +  +  P++
Sbjct: 40  DLNPKTLKEYASDLKHFIGWFETANYQEENIVFRIEDVATPTLTRYQEASQKVMELKPAT 99

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG--S 190
             + L +++  F+WA     +  +P   V+    +    R  T ++     +    G   
Sbjct: 100 INRRLITLKRFFEWAASNSIIRRDPSKPVKLVPEEKVSPRQMTDKEEDALIAAAEHGGSL 159

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP----DGFMKLLA 246
           + +     +L++GLR  + C      +Q    ++++ K      V L         K L 
Sbjct: 160 RDQTILIVMLHTGLRTMEVCDLAPGDIQIGKLTVRSGKRNKQREVPLNATCRSALEKYLV 219

Query: 247 MTPIGKETFFIN-NDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATA 304
             P G    F +     +++        +    KA +   SAH +R     + A      
Sbjct: 220 YLPPGSPYLFPSEKTGDRLSERALRHLIQKYMKKARLKGLSAHDLRHRFGYVMAVN-TPL 278

Query: 305 HELMATYGWKTVDQAETYTKG 325
           H L    G  + D    Y K 
Sbjct: 279 HRLAQIMGHDSPDTMMIYVKA 299


>gi|240145649|ref|ZP_04744250.1| integrase/recombinase XerD [Roseburia intestinalis L1-82]
 gi|257202271|gb|EEV00556.1| integrase/recombinase XerD [Roseburia intestinalis L1-82]
          Length = 218

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 36/208 (17%), Positives = 69/208 (33%), Gaps = 17/208 (8%)

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKSFWSEGSQPRLA 195
           M+  F +  ++  +  +P   ++ PK +    R  T E++    +Q      +  + +  
Sbjct: 1   MKAFFHFLEKERRIESDPAWRLKAPKIEKTMPRILTTEEVTFLLEQPSGNTPKELRDKAM 60

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM-------- 247
            E L  +G+R S+     V  L   +  +          +   +   + L          
Sbjct: 61  LELLYATGIRVSELISLKVSDLNLQMEYVICTDIHKERIIPFGNVAREALTRYMQDGRDH 120

Query: 248 --TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGAT 303
             +       F N     M+   F    K    KAG+    + H +R   A      GA 
Sbjct: 121 LISQADCPWLFTNCTGGAMSRQGFWKLIKFYGKKAGIESEITPHTLRHSFAAHLISNGAD 180

Query: 304 AHELMATYGWKTVDQAETYTK-GADRIR 330
              +    G   +   + Y++ G  RIR
Sbjct: 181 LKSVQEMLGHSDISTTQIYSQMGQGRIR 208


>gi|28493064|ref|NP_787225.1| integrase/recombinase [Tropheryma whipplei str. Twist]
 gi|28476104|gb|AAO44194.1| integrase/recombinase [Tropheryma whipplei str. Twist]
          Length = 349

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 43/299 (14%), Positives = 93/299 (31%), Gaps = 61/299 (20%)

Query: 86  SLAVNSRISFES----YFDQIIRKSGDFDYRKITTKHIRSGVE-SRKHTPSSA-IQFLTS 139
            L+  +  ++ +    Y   +  + G     ++ +  I   +E  ++HT  S     + +
Sbjct: 34  GLSDATLQTYRNSLGIYLSWLGEQ-GTQRLSEVNSNAIERFLEYRQRHTRKSTLANTVAA 92

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS------QPR 193
           +R   +  V +    +NP   +++PK       P + +++                 + R
Sbjct: 93  LRTFHRHLVLEGRQTLNPTEKLQQPKVPKTLPHPLSLDEIINLLKAADTNQAREISLRDR 152

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHL---QNNIFSIKTQKTGTIITVE-------------- 236
              E L  +G R S++    V        N+  +  +     + +               
Sbjct: 153 ALIEVLYGTGARISEAVSLNVNAFAESDQNLLRLTGKGNKQRMVLFGSYARNAVDNYLQH 212

Query: 237 -----------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMNAT 267
                                        + D    +L  T  G    F++N  +++   
Sbjct: 213 SRPKLLARSHVYRNITDASTLKYRPTSSTIGDAEDGVLTATAAGVPWLFLSNRGKRLTRQ 272

Query: 268 QFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           Q     +     A + +  S H +R   AT    AGA    +    G  +++    YTK
Sbjct: 273 QAGNIIRKLGEAAEIGRYISPHSLRHSFATHMLQAGADIRTVQELLGHSSINTTSVYTK 331


>gi|312792356|ref|YP_004025279.1| integrase family protein [Caldicellulosiruptor kristjanssonii
           177R1B]
 gi|312179496|gb|ADQ39666.1| integrase family protein [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 314

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 39/279 (13%), Positives = 89/279 (31%), Gaps = 20/279 (7%)

Query: 64  PRKKPTTLKW--LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121
           P++    L W   + ++         +  +   ++ +         +  + +   K    
Sbjct: 2   PKRSIVKLDWQEAMQQFLFYKRAEGRSERTLSDYKYHITHFFDIYPNCFHDEQQLKKCLY 61

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM-Q 180
              S+   P++    LT ++  FKW V +  +  NP   +  PK+K EG       ++ +
Sbjct: 62  EYLSQPIKPATYNLRLTYLKAFFKWCVEENILKSNPLEGL--PKKKAEGRIVNIDTEILE 119

Query: 181 QFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI----KTQKTGTI 232
           +      +    G +        L +G+R  ++    ++H       +       KT   
Sbjct: 120 KLLKLPDKNTFCGLRDYALILLTLDTGIRPKEAFSLLIEHFDFKTLQVFIPSNAAKTRVS 179

Query: 233 ITVELPDGFMKLLAMTPI-------GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS 285
             + +       +             K   F     + + +  +    +  + K GV   
Sbjct: 180 RVLPILPVTANAVKKLIAVRHPEWDEKVPVFCTVTGRPLTSDIWHGRIEMYSKKLGVKIR 239

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            + +R   A +    G     L  T G  T++  + Y  
Sbjct: 240 PYDLRHTFALLYLKNGGFELSLQKTLGHTTLEMTKRYVH 278


>gi|90422292|ref|YP_530662.1| phage integrase [Rhodopseudomonas palustris BisB18]
 gi|90104306|gb|ABD86343.1| phage integrase [Rhodopseudomonas palustris BisB18]
          Length = 304

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 46/272 (16%), Positives = 104/272 (38%), Gaps = 28/272 (10%)

Query: 85  GSLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHIRSGVE----SRKHTPSSAIQFLTS 139
             L+ N+  ++            G  +   +TT+H+R  +E    +RK +PS+  + +  
Sbjct: 18  RQLSANTLQAYGYDLADFCAWLKGQGEAPAVTTEHLRDYLESMMVARKLSPSTVRRRIAC 77

Query: 140 MRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR----- 193
           +R  F++   +  +  +P      +  R+    R  ++E+  Q  +        R     
Sbjct: 78  LRAFFRFLDDRGEMP-DPFTGWRLKLPRRKRLPRALSREEANQLLTSARAPGAARQSLPA 136

Query: 194 -----LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV------ELPDGFM 242
                +    ++ +G+R  + C+     + ++  S++    G+   V       L +   
Sbjct: 137 STPLCVEIRLMISTGIRVGELCKIATGDVSSDGASLRIHGKGSRDRVVYVSNPALRNELR 196

Query: 243 KL---LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS 297
           KL         G    F+N + + +    F    +  A +AG+ +  + H +R  +AT+ 
Sbjct: 197 KLTTLRQRLSAGDGPLFVNRNGENLRPYSFRTKLRNFAGQAGLRRRVTPHMLRHTAATLL 256

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            ++G     +    G  ++   E YT  +D  
Sbjct: 257 IESGVDIRIVQRLLGHSSIATTEIYTHVSDEA 288


>gi|319639109|ref|ZP_07993866.1| tyrosine recombinase xerC [Neisseria mucosa C102]
 gi|317399687|gb|EFV80351.1| tyrosine recombinase xerC [Neisseria mucosa C102]
          Length = 298

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 44/267 (16%), Positives = 93/267 (34%), Gaps = 17/267 (6%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH----IRSGVESRKHTP 130
           +  Y K+      + ++  ++     +++R   D     + T+         +  +  + 
Sbjct: 11  LERYLKTLSQQGKSQHTVSAYRRDLSELMRLLPDNLENGLPTRRDFVAALKKLSQKGLSE 70

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           SS  + L++ R    W V+ E +  +P  +++ P+      +   +E +           
Sbjct: 71  SSLARKLSAWRQYCSWLVQIEVMESDPTFNMKAPRLPERLPKALPQEPLNHILDHAPVDD 130

Query: 191 ----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVEL----PDGF 241
               + +  FE +  SGLR S+     +  +  +   +    K G    V L        
Sbjct: 131 ELDVRDKAMFELMYGSGLRLSEIQGLNLNSIVLDEGWVSVNGKGGKQRQVPLVAKSIAAL 190

Query: 242 MKLL--AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG--VNKSAHGVRKFSATIS 297
              L   +   G++  F N +  ++   Q     +A A + G   + S H +R   AT  
Sbjct: 191 RDYLAVRIAKEGEQALFTNKNGGRLGQRQIQKRLQAWAVRVGSASHISPHMMRHSYATHL 250

Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324
             A      +    G   +   + YTK
Sbjct: 251 LQASGDIRAVQELLGHSNLSATQVYTK 277


>gi|253991592|ref|YP_003042948.1| site-specific tyrosine recombinase XerC [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|211638470|emb|CAR67092.1| tyrosine recombinase xerc [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253783042|emb|CAQ86207.1| tyrosine recombinase xerc [Photorhabdus asymbiotica]
          Length = 303

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 47/272 (17%), Positives = 97/272 (35%), Gaps = 24/272 (8%)

Query: 75  ISEYRKSAH-WGSLAVNSRISFESYFDQIIR--------KSGDFDYRKITTKHIRSGVES 125
           I  + +       L+  + I++  +   +          +  D D  K+    IRS    
Sbjct: 12  IEAFLRYLRVERRLSPVTIINYRRHLSALAEMVLAIDVRQWEDLDPAKVRMLVIRSRRAG 71

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
            +   ++    L+S+R    W V Q  +A+NP  +V  P  K    +    +++ Q  + 
Sbjct: 72  LQS--ANLSLRLSSLRSFLDWQVTQGVMAVNPGKAVSTPGTKRHLPKNIDVDEVNQLLNI 129

Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT--------IIT 234
                   + R   E +  +GLR S+      +HL      +     G+           
Sbjct: 130 NFNEPLSVRDRTMLEVMYGAGLRLSELVGLDCRHLDLESGEVWVSGKGSKERKVPLGQTA 189

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKF 292
           VE  + ++++  +   G    FI+N  ++++       F     + G+N     H +R  
Sbjct: 190 VEWLNRWLEMRELFKPGDNAVFISNRGRRISTRNVQQRFAQWGIRQGINSHIHPHKLRHS 249

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324
            AT   ++      +    G  ++   + YT 
Sbjct: 250 FATHILESSGDLRAVQELLGHASLSTTQVYTH 281


>gi|295690851|ref|YP_003594544.1| integrase family protein [Caulobacter segnis ATCC 21756]
 gi|295432754|gb|ADG11926.1| integrase family protein [Caulobacter segnis ATCC 21756]
          Length = 313

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 43/273 (15%), Positives = 93/273 (34%), Gaps = 31/273 (11%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDF-----DYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
            + A N+  ++    +      G       D      +     + +R  +P++A +  ++
Sbjct: 20  RAAARNTLTAYGKDLEDARGFLGRSKRDLDDADAEAVEAYFQDLGARGLSPATAARRRSA 79

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----------G 189
           +R  +++ + + +   +P   V  PK      +   + ++++  +  +           G
Sbjct: 80  VRQFYRFVLGEGWRTDDPSRRVAAPKAGRPLPKVLERAEIERLLAAATAPNTEMGDSAQG 139

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHL-QNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248
            +     E +  SGLR S+     +  L ++  + I   K G      L D     +   
Sbjct: 140 LRLACIIELIYASGLRISELLALPLTALARDPAYLIVKGKGGKERLAPLNDAARAAVNAY 199

Query: 249 PIGKETFFI------------NNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFS 293
             G+ TF                   ++ A +        A  AG+++   S H +R   
Sbjct: 200 LAGRRTFLPKGAKESPWLFPSRGGSGRLTARRVGQLLDDAAIAAGIDRDKVSPHVLRHAF 259

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           AT   + GA    +    G   +   + YT  A
Sbjct: 260 ATHLLEGGADLRVIQTLLGHADIATTQIYTHVA 292


>gi|219558655|ref|ZP_03537731.1| integrase [Mycobacterium tuberculosis T17]
 gi|260187668|ref|ZP_05765142.1| integrase [Mycobacterium tuberculosis CPHL_A]
 gi|260201779|ref|ZP_05769270.1| integrase [Mycobacterium tuberculosis T46]
 gi|289444189|ref|ZP_06433933.1| integrase [Mycobacterium tuberculosis T46]
 gi|289448303|ref|ZP_06438047.1| integrase [Mycobacterium tuberculosis CPHL_A]
 gi|289570821|ref|ZP_06451048.1| integrase [Mycobacterium tuberculosis T17]
 gi|289417108|gb|EFD14348.1| integrase [Mycobacterium tuberculosis T46]
 gi|289421261|gb|EFD18462.1| integrase [Mycobacterium tuberculosis CPHL_A]
 gi|289544575|gb|EFD48223.1| integrase [Mycobacterium tuberculosis T17]
          Length = 332

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 47/285 (16%), Positives = 96/285 (33%), Gaps = 10/285 (3%)

Query: 44  IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII 103
           + A+++A   S  K          P + +  I +Y  + +       +    ++      
Sbjct: 46  VEAFLAA-AKSQNKPPGPPPSLHAPPSWRRDIDDYLLNLNAAGQRPATIRLRKTVLCAAA 104

Query: 104 RKSGDFDYRKITTKHIRSGVESRKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162
              G      +T +H+   +  ++H +P     + +++R  F WA   + V      S+ 
Sbjct: 105 HGLG-RPPADVTAEHLLDWLGKQQHLSPEGRKTYRSTLRGFFVWAYEMDRVRDYVADSLP 163

Query: 163 RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222
           + +   +  RP   +  Q   +     ++  L       +GLR +++ +A    L +   
Sbjct: 164 KVRCPKQPPRPAGDDVWQAALAKADRRTE--LMIRLAGEAGLRRAEAAQAHTGDLMDGGL 221

Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
            +   K G    V + D    L+  TP G    F N     + A                
Sbjct: 222 LLVHGKGGKRRIVPISDYLAALIRDTPHG--YLFPNGTGGHLTAEHVGKLVSRALPG--- 276

Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           + + H +R   AT +         +    G  ++   E YT   D
Sbjct: 277 DATMHTLRHRYATRAYRGSHNLRAVQQLLGHASIVTTERYTALCD 321


>gi|48428759|gb|AAT42408.1| site-specific recombinase XerC [Collimonas fungivorans Ter331]
          Length = 324

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 56/304 (18%), Positives = 98/304 (32%), Gaps = 43/304 (14%)

Query: 72  KWLISEYRKS-AHWGSLAVNSRISFESYFDQII---RKSGD----FDYRKITTKHIRSGV 123
           +  +S Y  S A    L+ ++  ++     ++    +  GD            +   + +
Sbjct: 7   QAYLSGYLDSLAGQRQLSAHTISNYGRDLKELASLTQALGDNWQFAAITHFHIRKFAAQL 66

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
            SR   PSS  + L++ R  F+W   Q  +A NP   V+ PKR     +    +D     
Sbjct: 67  HSRGLNPSSIARKLSAWRGFFEWLAEQTTLASNPVEGVKAPKRTKPLPKAMAADDAIHLV 126

Query: 184 S----FWSEGSQPRL----AFEFLLYSGLRCSDSCRA------GVQHLQNNIFSI----- 224
           +        GS   L     FE L  SGLR S+             H       +     
Sbjct: 127 ASGNPLADAGSSMALCNQAMFELLYSSGLRVSELAGLDLHYSRQPDHESAGWIDLDAAEV 186

Query: 225 -KTQKTGTIITVELPDGFMKLLAMTPIGK------------ETFFINNDKQKMNATQFSI 271
             T K G   +V +    ++ +A     +               F+     +++     +
Sbjct: 187 TVTGKGGKKRSVPVGKPAIQAIAAWLPQRAALLKSDQGEHAAALFLTERGTRVSPRVVQL 246

Query: 272 WFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             K  A   G+  N   H +R   A+           +    G  ++   + YT   D  
Sbjct: 247 RLKHHAQSLGIASNVHPHVLRHSFASHMLQGSGDLRAVQELLGHASIAATQVYT-SLDFQ 305

Query: 330 RLGI 333
           RL  
Sbjct: 306 RLAQ 309


>gi|271964493|ref|YP_003338689.1| tyrosine recombinase XerD [Streptosporangium roseum DSM 43021]
 gi|270507668|gb|ACZ85946.1| tyrosine recombinase XerD [Streptosporangium roseum DSM 43021]
          Length = 308

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 51/297 (17%), Positives = 104/297 (35%), Gaps = 33/297 (11%)

Query: 73  WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKH 128
            ++S Y         LA N+  S+     + +      G   + +I    + + + + + 
Sbjct: 6   AVLSSYLAHLALERGLAANTLASYRRDLLRYVEHLKSRGRVTFGEIAEGDVTAFLAALRA 65

Query: 129 T--------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                     SSA + ++++R L ++A+R+     +P   V  P++     +  +  D++
Sbjct: 66  GDEEHQALVASSAARAVSAVRGLHRFALREGVSDHDPAHGVRPPRQLRRLPKAISVNDVE 125

Query: 181 QFKSF-----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ---KTGTI 232
           +  +           + R   E L  +G R S++    V  +     + + +   K G  
Sbjct: 126 RLIAASGPEGAPLTMRNRALLELLYGTGARISEAVGLAVDDVDLGSDTQQVRLRGKGGRT 185

Query: 233 ITVELPDGFMKLL-----------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281
             V L     + L           A    G    F+N    ++         +A A + G
Sbjct: 186 RLVPLGRFAREALGAYLARARPGIAAHGRGTSGLFLNARGGRLTRQGAWEVLQAAAERGG 245

Query: 282 VNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT-KGADRIRLGIKNS 336
           +   S H +R   AT   D G     +    G  +V   + YT    D++R     +
Sbjct: 246 LAGISPHILRHSFATHLLDGGVDVRVVQELLGHASVTTTQVYTLVTVDKLREAYAAA 302


>gi|254167351|ref|ZP_04874203.1| site-specific recombinase, phage integrase family protein
           [Aciduliprofundum boonei T469]
 gi|197623614|gb|EDY36177.1| site-specific recombinase, phage integrase family protein
           [Aciduliprofundum boonei T469]
          Length = 279

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 45/265 (16%), Positives = 95/265 (35%), Gaps = 19/265 (7%)

Query: 75  ISEYRKSAHWGSLAVNSRISF----ESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
           + ++++       + N+   +            +++ D     +    +      RK++ 
Sbjct: 8   LEKFKEYLRGEKRSENTIKEYAHFISDMLRYFKKRAEDITPGDLNKYKMYLST-KRKYSK 66

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           +S      ++R  FK+        ++   ++  PKR  +  +  +++++++     SE  
Sbjct: 67  NSLYLATKAIRSYFKY------KNLDTAKNLSSPKRPKQMPKYLSEDEVKRLIEASSENP 120

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPD----GFMKL 244
           +       L YSGLR S+ C   ++ +     I  +++ K      V +           
Sbjct: 121 RDYAIISLLAYSGLRVSELCNLKIEDVDFNERIVYVRSGKGDKDRIVVVSPRVIEALQNY 180

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302
           L       E  F +    K++  Q     K  A KAG+ K  + H +R   AT     G 
Sbjct: 181 LYTREDDMEYLFASQKSNKISRVQVFRIVKKYAEKAGIKKEVTPHVLRHTLATTLLRRGV 240

Query: 303 TAHELMATYGWKTVDQAETYTKGAD 327
               +    G  +V   + YT   D
Sbjct: 241 DIRFIQQFLGHSSVATTQIYTHVDD 265


>gi|116492727|ref|YP_804462.1| tyrosine recombinase XerC subunit [Pediococcus pentosaceus ATCC
           25745]
 gi|122265809|sp|Q03FK2|XERC_PEDPA RecName: Full=Tyrosine recombinase xerC
 gi|116102877|gb|ABJ68020.1| tyrosine recombinase XerC subunit [Pediococcus pentosaceus ATCC
           25745]
          Length = 301

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 44/299 (14%), Positives = 98/299 (32%), Gaps = 30/299 (10%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIR---KSGDFD----YRKITTKHIRSGVESR 126
           L  +Y         +  +  ++    D   +    +GD        +       S +  R
Sbjct: 6   LFKQYLTVER--QYSEKTVTAYLEDIDAFQKFLTDTGDKTDLLLVDRFDVNVYMSYLFDR 63

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-FKSF 185
               +S  + ++++R  +++ V+ + V  NP   V+  K+  +    + +++M   F++ 
Sbjct: 64  HLARTSISRKVSALRSFYRFLVKNDLVDKNPFELVQLKKQSDKLPHFFYEKEMNMLFEAV 123

Query: 186 WSEGSQPRL----AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240
           +      +L      E L  +G+R S+        +  ++ +I    K      V     
Sbjct: 124 YQAEGAQKLRNIAILEVLYGTGMRVSECAALQWSDIDFSMQTILVLGKGNKERYVPFGRY 183

Query: 241 FMKLLA------------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--A 286
             + L                      FIN+  + +  T          T + +N     
Sbjct: 184 AKEALQNYRKNEWEPFLSKYKQTHNFVFINHYAKPITTTGIEYILNQVITASSLNGKIHP 243

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345
           H +R   AT   + GA    +    G  ++   + YT    + +L     +      D+
Sbjct: 244 HMLRHSFATALLNNGADLRTVQELLGHSSLSTTQIYTH-VTKEKLQESYRKYFPRSTDA 301


>gi|288799833|ref|ZP_06405292.1| tyrosine type site-specific recombinase [Prevotella sp. oral taxon
           299 str. F0039]
 gi|288333081|gb|EFC71560.1| tyrosine type site-specific recombinase [Prevotella sp. oral taxon
           299 str. F0039]
          Length = 362

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 53/265 (20%), Positives = 101/265 (38%), Gaps = 22/265 (8%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
           L  ++  Y K      L+  +    E +FD +  +              +S ++      
Sbjct: 104 LSKILRVYLKDKD-IELSKITPKWVERFFDFLEHEF-------------KSFIKKTPLKA 149

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-WSEG 189
           SSA      +      AV+ + +  NPC  V   K +       T+E++++  S  +  G
Sbjct: 150 SSARLLGNRLSGALAEAVKMDIIKDNPCQKVRAIKAQESQRTYLTQEELKRLASTPYERG 209

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN--IFSIKTQKTGTIITVELPDGFMKLLAM 247
            +   AF F   +GLR SD  +     +  +    +   +KT  +  ++L +G  K+L  
Sbjct: 210 ERVTKAFLFSCLTGLRFSDVSKLRWAEVSEDFKRITFVQKKTSGLEYLDLSEGATKILKE 269

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAH 305
                   F +  ++  NA +    ++    +AG+NK  S H  R   AT+        +
Sbjct: 270 RKNNGGLVFYDLPRESGNAGKLLNSWR---VRAGINKKISFHTARHTFATMLLTLDVDLY 326

Query: 306 ELMATYGWKTVDQAETYTKGADRIR 330
            +    G K +   + Y K  D+ +
Sbjct: 327 TVSKLLGHKDIKTTQIYAKIIDKKK 351


>gi|28871096|ref|NP_793715.1| site-specific recombinase, phage integrase family [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|28854346|gb|AAO57410.1| site-specific recombinase, phage integrase family [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 347

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 53/325 (16%), Positives = 111/325 (34%), Gaps = 18/325 (5%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
           PF+     R        R+     +   +         + + L G   +  +++    + 
Sbjct: 21  PFMAYYEKRGDAWRAQIRRKGYPTLSATF-DTKAEAQRWAAELEGDMSRARFVDVREAEA 79

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-K 127
           T+L   +  Y   +        ++         +  K        + +  + S  ++  K
Sbjct: 80  TSLATALERY--ESEVTESKKGAKQERVRIKKWMESKFAGKSLASLRSSDMASYRDAEIK 137

Query: 128 HTPSSAIQFL--TSMRVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPWTKEDMQQFK 183
              S+A   L    +  L+  A +   +    NPC ++  PK   +  R  T ++++   
Sbjct: 138 AGRSTATVRLDLAVISHLYTVATKDWGIEGLTNPCRALRMPKGSKQRERRPTADELKSLY 197

Query: 184 SFWSEGSQPR-LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
               E S    +  E  + + +R S+        +Q  +  ++  K G   +V L     
Sbjct: 198 KAAGEISPELPVIIELAVETAMRRSELVTLRKDQIQGKVAFLEDTKNGERRSVPLSSRAR 257

Query: 243 KLLAM--TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISAD 299
           +L+     PI     F      ++ A   S +F     KA +     H +R  + +   +
Sbjct: 258 ELIEGVPAPIKGGPLF------RLKADTVSNYFPLACEKANIQGLRLHDLRHEATSRLFE 311

Query: 300 AGATAHELMATYGWKTVDQAETYTK 324
            G T  E+ +  G KT+   + YT 
Sbjct: 312 RGFTMMEVASITGHKTLAMLKRYTH 336


>gi|219669469|ref|YP_002459904.1| tyrosine recombinase XerD [Desulfitobacterium hafniense DCB-2]
 gi|219539729|gb|ACL21468.1| tyrosine recombinase XerD [Desulfitobacterium hafniense DCB-2]
          Length = 322

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 47/294 (15%), Positives = 90/294 (30%), Gaps = 45/294 (15%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRKHTPSSAI---QFLTS 139
             L+ N+R S+E    +          +        +   +   K+   SA    ++L +
Sbjct: 20  RGLSPNTRNSYERDLRKFTAFLQQRGKNIIACEGNDLFLFLLQEKNQGRSARTLARYLAT 79

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK----SFWSEGSQP--- 192
           +R  F + + +E    +P   +  PK +       ++  + +          EG +P   
Sbjct: 80  LRGFFAFLLGEEMREDDPTEYLSTPKLEQHLPHVLSEGSISKLMGEGGDRDKEGPKPGKS 139

Query: 193 --------------------RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-T 231
                                   E L   GLR S+     V  +     +++ +  G  
Sbjct: 140 SKKAGDSDSEGKDKGLLMRNMAMIEVLYGCGLRVSELVGLKVSDIIFETRTLRCRGKGNK 199

Query: 232 IITVELPDGFMKLLA----------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281
              V + +  +++L                 E  F+N+    +         K  A   G
Sbjct: 200 ERIVPIGEYALEVLQNYLEHDRERLRGKHKTEVLFLNSRGTALTRQGIWDILKKWAQTHG 259

Query: 282 V--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           V  N   H  R   AT   D GA    +    G   +   + YT  + +  L +
Sbjct: 260 VQENIYPHKFRHSFATHLLDHGADLRSVQEMLGHADIATTQIYTHLSRQRLLEV 313


>gi|257125886|ref|YP_003164000.1| integrase family protein [Leptotrichia buccalis C-1013-b]
 gi|257049825|gb|ACV39009.1| integrase family protein [Leptotrichia buccalis C-1013-b]
          Length = 356

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 45/276 (16%), Positives = 95/276 (34%), Gaps = 25/276 (9%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH----- 128
            + EY K  ++  + + +  SF +Y +   R   +   +   +++++S    +K      
Sbjct: 62  YLDEYEKIHNFEEIEMMTFRSFIAYLNSPKRLMENDKNKTENSENLKSIKNLKKCKKKAK 121

Query: 129 ----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
               +  S  + ++++R  FK+      +  N    +  PK + E      ++D+ + + 
Sbjct: 122 PKPVSRRSINRKISALRTFFKYLQEINVIETNKASYISMPKFEKELPNVLNRDDLNKLRH 181

Query: 185 FWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL--- 237
             +     G + RL  E L  SGLR  +        +      I+    G    V     
Sbjct: 182 VINTEKITGIRDRLIIELLYSSGLRSIELINLSEFMIDIEEREIRVIGKGEKERVTFFSE 241

Query: 238 --PDGFMKLLAMTPIG-----KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288
                 +K +           +E   +N+  +K+              +AG+ K  + H 
Sbjct: 242 NAKKWLIKYIDEKKKQYENYTREVLIVNSKGKKLTTRSLRRLISGHVHEAGIEKEITPHV 301

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            R   A    + G     L    G  ++   + YT 
Sbjct: 302 FRHSFAMELLNNGVEIQYLQELMGHSSIAATQVYTH 337


>gi|312876294|ref|ZP_07736280.1| integrase family protein [Caldicellulosiruptor lactoaceticus 6A]
 gi|311796940|gb|EFR13283.1| integrase family protein [Caldicellulosiruptor lactoaceticus 6A]
          Length = 314

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 42/279 (15%), Positives = 91/279 (32%), Gaps = 20/279 (7%)

Query: 64  PRKKPTTLKW--LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121
           P++    L W   + ++         +  +   ++ +         +    +   K    
Sbjct: 2   PKRSIVKLDWQEAMQQFLFYKRAEGRSERTLSDYKYHITHFFDIYPNCFNDEQQLKKCLY 61

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM-Q 180
              S+   P++    LT ++  FKW V +  +  NP   +  PK+K EG       ++ +
Sbjct: 62  EYLSQPIKPATYNLRLTYLKAFFKWCVEENILKSNPLEGL--PKKKAEGRIVNIDTEILE 119

Query: 181 QFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI----KTQKTGTI 232
           +      +    G +        L +G+R  ++    ++H       +       KT   
Sbjct: 120 KLLKLPDKNTFCGLRDYALILLALDTGIRPKEAFSLLIEHFDFKTLQVFIPSNAAKTRVS 179

Query: 233 ITVELPD----GFMKLLAMTPIG---KETFFINNDKQKMNATQFSIWFKAKATKAGVNKS 285
             + +         KL+A        K   F     + + +  +    +  + K GV   
Sbjct: 180 RVLPILPVTANAVKKLIAARHPEWDEKVPVFCTVTGRPLTSDIWHGRIEMYSKKLGVKIR 239

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            + +R   A +    G     L  T G  T++  + Y  
Sbjct: 240 PYDLRHTFALLYLKNGGYELSLQKTLGHTTLEMTKRYVH 278


>gi|238750683|ref|ZP_04612182.1| Tyrosine recombinase [Yersinia rohdei ATCC 43380]
 gi|238711073|gb|EEQ03292.1| Tyrosine recombinase [Yersinia rohdei ATCC 43380]
          Length = 263

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 41/240 (17%), Positives = 81/240 (33%), Gaps = 16/240 (6%)

Query: 101 QIIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINP 157
           +I    G   ++ +    +RS V   K      SS    L+++R    W V Q  +  NP
Sbjct: 2   EIAEPMGLVHWQTLDAAQVRSLVSRSKRAGLHSSSLALRLSALRSFLDWLVSQGVLNANP 61

Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGV 214
              V  P+      +    +++ +            + R   E +  +GLR S+      
Sbjct: 62  AKGVSTPRSGRHLPKNIDVDEVDKLLDIDLNDPLAVRDRAMLEVMYGAGLRLSELVGMNC 121

Query: 215 QHLQNNIFSIKTQKTGTI--------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA 266
           +H+      +     G+           V   + ++ L  +     +  F+ N  ++++A
Sbjct: 122 KHVDLASGEVWVMGKGSKERKVPIGKTAVTWLEHWLALRELFEPQDDAIFLANTGKRISA 181

Query: 267 TQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
                 F     K GV  +   H +R   AT   ++      +    G   +   + YT 
Sbjct: 182 RNVQKRFAEWGVKQGVSSHIHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTH 241


>gi|116254596|ref|YP_770432.1| putative phage integrase/recombinase [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|116254608|ref|YP_770444.1| putative phage integrase/recombinase [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|116255785|ref|YP_771618.1| putative integrase/recombinase protein [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115259244|emb|CAK10376.1| putative phage integrase/recombinase [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115259256|emb|CAK10389.1| putative phage integrase/recombinase [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115260433|emb|CAK03537.1| putative integrase/recombinase protein [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 286

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 36/253 (14%), Positives = 91/253 (35%), Gaps = 15/253 (5%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRK--ITTKHIRSGVESRKHTPSSAIQFLTSMRV 142
            +L+  ++ S+     +  R  G    R      +  +  + S   +  +  Q + ++R 
Sbjct: 18  RNLSPATQRSYLHAVTKFSRYFGRSPDRLGLEDVRAFQVHLVSSGLSWPALNQTVCALRF 77

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202
            F   +    +       +   +   +       +++ +F        + R A      +
Sbjct: 78  FFGVTLGHGEIP----ERIAYARTPAKLPTILNGDEIVRFLEAVPS-LRTRTALTTAYAA 132

Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQ--KTGTIITVELPDGFMKLLAM-TPIGKETFFI-- 257
           GLR S++    V+ +      I+ +  K G    V L    + +L +   + +   ++  
Sbjct: 133 GLRASEAVHLKVRDIDGERGIIRVEHGKGGKDRNVMLSAQLLAILRVYWRLARPEVWLFP 192

Query: 258 -NNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWK 314
             ++ + ++        ++  T AG++K  + H +R   AT   ++G     +    G  
Sbjct: 193 GRDETKPIDVQVLYSACRSACTAAGIDKRVTVHTLRHSFATHLLESGTDIRIIQVLLGHN 252

Query: 315 TVDQAETYTKGAD 327
            +     YTK ++
Sbjct: 253 NLSTTARYTKVSN 265


>gi|28572274|ref|NP_789054.1| DNA recombinase [Tropheryma whipplei TW08/27]
 gi|28410405|emb|CAD66791.1| putative DNA recombinase [Tropheryma whipplei TW08/27]
          Length = 349

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 44/299 (14%), Positives = 94/299 (31%), Gaps = 61/299 (20%)

Query: 86  SLAVNSRISFES----YFDQIIRKSGDFDYRKITTKHIRSGVE-SRKHTPSSA-IQFLTS 139
            L+  +  ++ +    Y   +  + G     ++ +  I   +E  ++HT  S     + +
Sbjct: 34  GLSDATLQTYRNSLGIYLSWLGEQ-GTQRLSEVNSNAIERFLEYRQRHTRKSTLANTVAA 92

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS------QPR 193
           +R   +  V +   A+NP   +++PK       P + +++                 + R
Sbjct: 93  LRTFHRHLVLEGRQALNPTEKLQQPKVPKALPHPLSLDEIINLLKAADANQAREISLRDR 152

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHL---QNNIFSIKTQKTGTIITVE-------------- 236
              E L  +G R S++    V        N+  +  +     + +               
Sbjct: 153 ALIEVLYGTGARISEAVSLNVNAFAESDQNLLRLTGKGNKQRMVLFGSYARNAVDNYLQH 212

Query: 237 -----------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMNAT 267
                                        + D    +L  T  G    F++N  +++   
Sbjct: 213 SRPKLLARSHVYRNITDASTLKYRPTSSTIGDAEDGVLTATAAGVPWLFLSNRGKRLTRQ 272

Query: 268 QFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           Q     +     A + +  S H +R   AT    AGA    +    G  +++    YTK
Sbjct: 273 QAGNIIRKLGEAAEIGRYISPHSLRHSFATHMLQAGADIRTVQELLGHSSINTTSVYTK 331


>gi|258625073|ref|ZP_05719992.1| tyrosine recombinase XerC [Vibrio mimicus VM603]
 gi|258582624|gb|EEW07454.1| tyrosine recombinase XerC [Vibrio mimicus VM603]
          Length = 310

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 36/278 (12%), Positives = 93/278 (33%), Gaps = 21/278 (7%)

Query: 68  PTTLKWLISEYRKSAH-WGSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGV 123
           P  L   +  +    H    L++ ++ +++   +   + + + G   + ++    +R  V
Sbjct: 10  PNALAQSLERFYAYLHSEKGLSLYTQRNYKQQLETMARYLAQMGLTSWPQLDAAWVRQLV 69

Query: 124 ---ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
              + +    SS    L+S+R    + + +  +  NP   V  P+++    +    ++M 
Sbjct: 70  VLGKRQGMKASSISTRLSSLRSFLDFLILRGELQANPAKGVSAPRKQRPLPKNLDVDEMA 129

Query: 181 QFKSFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITV 235
           Q            + R   E +  SGLR ++     V+ +  ++    +  +        
Sbjct: 130 QLLEVTDDDPLSIRDRAIMELMYGSGLRLAELVSIDVKDVNLRDGEIRVIGKGNKERKVW 189

Query: 236 E-------LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286
                   +         +    +   F++    +++             K  V  + S 
Sbjct: 190 FAGQAQEWVGKWLKLRSQLANSDETALFVSKLGTRISHRSVQKRMAEWGQKQAVASHISP 249

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           H +R   AT   ++      +    G + +   + YT 
Sbjct: 250 HKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTH 287


>gi|323464636|gb|ADX76789.1| tyrosine recombinase XerC [Staphylococcus pseudintermedius ED99]
          Length = 296

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 35/262 (13%), Positives = 87/262 (33%), Gaps = 20/262 (7%)

Query: 88  AVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRV 142
           + ++  ++     Q        +     ++ I  ++    +       ++  + ++++R 
Sbjct: 19  SDHTLKAYHDDLVQFNRFLAQEQLSLTAFKYIDARNYLQTLYDLGLQRTTVSRKISTLRS 78

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFEF 198
            + + + Q+   +NP + +  PK++      +  E+M+           +G + R+  E 
Sbjct: 79  FYAFWMTQDDEIVNPFVQLVHPKKERYLPTFFYTEEMEALFQTVMQDAHKGLRDRVILEL 138

Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE--------LPDGFMKLLAMTP 249
              +G+R S+      + +   +  IK   K G    V         +     +   +  
Sbjct: 139 FYATGIRVSELVSLKTEDVDLEMCWIKVLGKGGKERIVPFGEFCRQSIEQYLAEFAPIQN 198

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATK-AGVN-KSAHGVRKFSATISADAGATAHEL 307
           +       N   Q +              + AGV     H +R   AT   + GA    +
Sbjct: 199 VQHPYLITNLKGQPITERGVRYVLNDIVKRTAGVTSIHPHKLRHTFATHLLNEGADLRTV 258

Query: 308 MATYGWKTVDQAETYTKGADRI 329
            +  G   +     YT   ++ 
Sbjct: 259 QSLLGHVNLSTTGRYTHVTNQQ 280


>gi|288803800|ref|ZP_06409227.1| tyrosine recombinase XerD [Prevotella melaninogenica D18]
 gi|288333707|gb|EFC72155.1| tyrosine recombinase XerD [Prevotella melaninogenica D18]
          Length = 294

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 43/275 (15%), Positives = 102/275 (37%), Gaps = 24/275 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVE---S 125
           ++ ++     +  + +  + I++     +  R          +  I +  +R+ +E    
Sbjct: 3   MVEKFLDYIKFERNYSPMTVINYRKDLTEFERFYKELEPQLSWESIDSDIVRNWMEYMMD 62

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK-- 183
           R ++ SS  + L+++R  +++A+R++ +  +P   ++ PK++    +   + +M++    
Sbjct: 63  RGNSASSVNRRLSALRSFYQFALRRKLIEKDPVHGLQGPKKQKPLPQFLKESEMERLLDS 122

Query: 184 SFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPD 239
             W++  +    R        +G+R S+      + + N    +K T K      V    
Sbjct: 123 KMWTDSYKDVLERTIIITFYVTGIRLSELIGLDDKDIDNVTCEVKVTGKRNKQRIVPFGK 182

Query: 240 GFMKLLA--------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGV 289
               + A                FF     ++M   Q     K   +K      +S H +
Sbjct: 183 ELADVFAQYQEVRNTTVKGDSIAFFQTEKGKRMTTAQVRTLVKKNLSKVSTLKKRSPHVL 242

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           R   AT   +  A    +    G +++   E YT 
Sbjct: 243 RHTFATAMLNHEAGLESVKKLLGHESLSTTEIYTH 277


>gi|47097538|ref|ZP_00235075.1| integrase/recombinase XerC [Listeria monocytogenes str. 1/2a F6854]
 gi|254828640|ref|ZP_05233327.1| integrase/recombinase XerC [Listeria monocytogenes FSL N3-165]
 gi|254898558|ref|ZP_05258482.1| hypothetical protein LmonJ_02045 [Listeria monocytogenes J0161]
 gi|254911951|ref|ZP_05261963.1| integrase/recombinase XerC [Listeria monocytogenes J2818]
 gi|254936278|ref|ZP_05267975.1| integrase/recombinase XerC [Listeria monocytogenes F6900]
 gi|47014086|gb|EAL05082.1| integrase/recombinase XerC [Listeria monocytogenes str. 1/2a F6854]
 gi|258601039|gb|EEW14364.1| integrase/recombinase XerC [Listeria monocytogenes FSL N3-165]
 gi|258608867|gb|EEW21475.1| integrase/recombinase XerC [Listeria monocytogenes F6900]
 gi|293589913|gb|EFF98247.1| integrase/recombinase XerC [Listeria monocytogenes J2818]
          Length = 300

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 38/273 (13%), Positives = 96/273 (35%), Gaps = 27/273 (9%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK------ITTKHIRSGVESRKHTP 130
           +Y  S    + +VN+  ++E+      R   +           +  +   + ++ +  + 
Sbjct: 13  DYLHSER--NYSVNTSTAYENDLLDFRRFLNEQAITTYQQVTFLDVRIYLTELKQKSFSR 70

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-----FKSF 185
           ++  + ++S+R  + + +R+  +  NP   V   K +    + +  E+M+      ++  
Sbjct: 71  TTVARKISSLRSFYTFLLRENVINENPFTYVSHAKNQLRLPKFFYSEEMEALFQVVYEDN 130

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVEL------- 237
            +   + R+  E L  +G+R S+     +  L  +  +I    K      V         
Sbjct: 131 ETLTLRDRVLLEVLYGTGIRVSECAGILLPDLDTSYQAILIRGKGNKERYVPFGAYAEDA 190

Query: 238 ----PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRK 291
                   + L++      +   +N+    +             +KA + +    H +R 
Sbjct: 191 ITDYLPERVNLMSRYKKSHDALLVNHYGDPLTTRGIRYCLTKIISKASLTRKIHPHMLRH 250

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK 324
             AT   + GA    +    G  ++   + YT 
Sbjct: 251 TFATDLLNNGADMRTVQELLGHASLSSTQIYTH 283


>gi|257485772|ref|ZP_05639813.1| Phage integrase:Phage integrase, N-terminal SAM-like protein
           [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|302130294|ref|ZP_07256284.1| Phage integrase:Phage integrase, N-terminal SAM-like protein
           [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|331012868|gb|EGH92924.1| Phage integrase [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 320

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 55/277 (19%), Positives = 104/277 (37%), Gaps = 32/277 (11%)

Query: 84  WGSLA-VNSRISFESYFDQIIRKSGDF---DYRKITTKHI---RSGVESRKHTPSSAIQF 136
           + +L    +R ++++  +      G     ++R +T  H+   R+ +E R    ++  + 
Sbjct: 33  FANLDNPRTRRAYQNDLEDFCGFVGLASADEFRVVTRSHVLAWRAQLEHRGLAGATIRRK 92

Query: 137 LTSMRVLFKWAVRQE-YVAINPCLSVERPKRKT-EGIRPWTKED-----MQQFKSFWSEG 189
           L ++  LF   +        NP   V+RPK ++ EG  P   +      ++       +G
Sbjct: 93  LAALASLFDHLLESNAIAGGNPVHGVKRPKIESNEGKTPALGDHQAKALLEAPDETTLKG 152

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKT-QKTGTIITVELPDG------ 240
            + R     LLY GLR  ++    V  +Q+   I  +K   K G +  + L         
Sbjct: 153 LRDRALMAVLLYHGLRREEAALLQVGDIQDRRGIQHLKVHGKGGKVRYLPLHPVAAGRIH 212

Query: 241 --FMKLLAMTPIGKETFFINNDKQ----KMNATQFSIWFKAKATKAGV---NKSAHGVRK 291
                        K   FI    +     + A    +   A A KAG+       HG+R 
Sbjct: 213 QYLESSGHHWADRKVPLFIPLRGKLTGAGITANGIYMVVAAYAKKAGIQVDGLGVHGLRA 272

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
            +AT + +  A   ++ A  G   +   + Y +  +R
Sbjct: 273 TAATNALEHEADIAKVQAWLGHANISTTKIYDRRENR 309


>gi|269120003|ref|YP_003308180.1| integrase family protein [Sebaldella termitidis ATCC 33386]
 gi|268613881|gb|ACZ08249.1| integrase family protein [Sebaldella termitidis ATCC 33386]
          Length = 344

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 48/329 (14%), Positives = 112/329 (34%), Gaps = 25/329 (7%)

Query: 26  RKGHGRRIRLPYPHESTFIPAYM---------SALTGSTPKREYINSPRKKPTTLKWLIS 76
           RK     +R+       +   Y           A+           +  +   T   L  
Sbjct: 18  RKPWA--VRVTTGWSKDYKQQYKYLGYYTTRKDAMQALAEYNTNPYNIDESEITFGELHE 75

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF 136
            + K+ H+  L+VN+  ++ + F+   +   +    +I T H+++ ++       + +  
Sbjct: 76  RW-KNKHFKDLSVNTIKTYNTAFNY-CKPILNLKMTEIKTVHLQNFIDDLNKNHGTLMIL 133

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKT-EGIRPWTKEDMQQFKSFWSEGSQPRLA 195
              +  +F++A++ + +  +    +   KRK  +    +T  ++                
Sbjct: 134 KNVINQVFEYAMKLDIIQKDYSKFINVGKRKVLKEKSVFTDAEIDLLWDNLQNFKYADTI 193

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKT--GTIITVELPDGFMKLLAMT--P 249
              ++Y+G+R  +      Q +       ++K  KT  G    + +     +L+ +    
Sbjct: 194 L-IMIYTGMRIGELLSLMKQDVDLIEQTITVKESKTAAGRNRVIPIHPRIKELIHIRYEH 252

Query: 250 IGKETFFINNDKQKM--NATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHEL 307
              +    +   +           +F        +N + H  R   AT   DAG  A  +
Sbjct: 253 SNIDNLIASATNKTSLEYVNYLRHFFAPVMKSLKMNHTPHDCRHTFATRLNDAGGNATAI 312

Query: 308 MATYGWKTVDQAET-YT-KGADRIRLGIK 334
               G ++    E  YT K  D +R  ++
Sbjct: 313 KKMIGHESFTLTEKVYTHKKIDELRKALE 341


>gi|218263889|ref|ZP_03477845.1| hypothetical protein PRABACTJOHN_03535 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222439|gb|EEC95089.1| hypothetical protein PRABACTJOHN_03535 [Parabacteroides johnsonii
           DSM 18315]
          Length = 327

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 46/279 (16%), Positives = 99/279 (35%), Gaps = 15/279 (5%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           LI  +  +      +  S   + S  +  IRK G  + R ITT  +R+ +   + T  + 
Sbjct: 52  LIDSFLSAKRVEGCSDKSIHYYRSTLNNAIRKIG-KNIRHITTDDLRNYLNDYQQTSGAT 110

Query: 134 ----IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
                     +   F W   ++Y+  +P   + + K        ++ E ++Q +    EG
Sbjct: 111 KVTVDNIRRILSSFFSWLEDEDYIVKSPVRRIHKVKVGKTVKETYSDEALEQMRDHC-EG 169

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDG----FMKL 244
            +     + L  +G+R  +  +     +   N   I T K      V           + 
Sbjct: 170 IRDLALIDLLASTGMRVGELVKLNRNDIDFENRECIVTGKGDKQRRVYFDARAKIHLQRY 229

Query: 245 LAMTPIGKETFFIN--NDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG 301
           LA         F++      ++  +   I  +    +  + K   H  R+  AT++ D G
Sbjct: 230 LAERIDDNPALFVSLLAPYDRLQISGVEIRLRRLGRELNIPKVHPHKFRRTLATMAIDKG 289

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
               ++    G +++D    Y    ++  + + + + I 
Sbjct: 290 MPIEQVQHLLGHQSLDTTLQYA-MVNQTNVKMSHRKFIG 327


>gi|254461252|ref|ZP_05074668.1| phage integrase, putative [Rhodobacterales bacterium HTCC2083]
 gi|206677841|gb|EDZ42328.1| phage integrase, putative [Rhodobacteraceae bacterium HTCC2083]
          Length = 422

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 54/343 (15%), Positives = 113/343 (32%), Gaps = 56/343 (16%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSR-ISFESYFDQIIRKSGDF 109
           + G+ P  E  +  +    T+  LI EY KS  + + A ++R          I    G+ 
Sbjct: 80  INGNDPLEEKYDPTKSF--TVTNLIDEYLKSVAYLNKADSTRYTDICRIDRHIKPLVGNR 137

Query: 110 DYRKITTKHIRSGVES------RKHTPS--------------SAIQFLTSMRVLFKWAVR 149
               I  + +            ++  PS              +A   +   R +  W  +
Sbjct: 138 LVSSIDMRFVEKLFRDIASGKTKRDKPSGKKFGRSTVRGGEGAARSTIRLFRAILSWGEK 197

Query: 150 QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL--------------- 194
              V  N   +        +G R    +D + ++  W   +  RL               
Sbjct: 198 AALVDHNIVRAARNVDIGRDGKRETILDDPEAYEQLW--HTLDRLSDPDQENENHAPIQQ 255

Query: 195 ----AFEFLLYSGLRCSDSCRAGVQHLQ--------NNIFSIKTQKTGTIITVELPDGFM 242
               A + ++ +G R  +      + +         +       ++TG    + LP   +
Sbjct: 256 EATDAIKVIMLTGARKGEITNLLWEQVDLESGIISIDPHLHKTGRRTGDRRIIGLPQLAI 315

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADA 300
           ++L+   +      +   K+  +    S  ++    +A +  +   HG+R   A+  A  
Sbjct: 316 EILSSYSVELRAGLVFKSKRSSDVIDLSKIWRRVREEANLPPTLGLHGLRHSLASHMAMD 375

Query: 301 GATAHELMATYGWKTVDQAETYTK--GADRIRLGIKNSRRISS 341
           GA+A E+M   G + +   + Y     A R  L      +++ 
Sbjct: 376 GASASEIMTALGHRDITSTQRYIHWALASRQSLAENAVSKLTE 418


>gi|325960047|ref|YP_004291513.1| tyrosine recombinase xerC [Methanobacterium sp. AL-21]
 gi|325331479|gb|ADZ10541.1| Tyrosine recombinase xerC [Methanobacterium sp. AL-21]
          Length = 331

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 43/273 (15%), Positives = 90/273 (32%), Gaps = 25/273 (9%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESY---FDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
           +I +Y       + + N+  ++ S    F + ++   D    ++  +  +  +   K   
Sbjct: 44  MIEDYLIELEIRNYSKNTIKTYRSIIINFHKFLKSEKDLYDERLVLRAFKRYIRYLKREK 103

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----------- 179
           + +  ++  + V+ K       + +     V+ PKR     +   + ++           
Sbjct: 104 NVSQNYIYLVTVVVKKFFEFGGIGV--LKDVQTPKRTKSLPKSLNENEILSLINAMDHDK 161

Query: 180 QQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237
             + S  SE  + R  +    L  SGLR S+              +I+ +  G    + L
Sbjct: 162 DDYLSETSEFLRLRNKVILALLYSSGLRVSELVTLHSDSFDLTDRTIRIRGKGEKDRIVL 221

Query: 238 PDG-----FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290
            D          L +     +  F+N     +      +  K  A  AG+ K  + H +R
Sbjct: 222 FDEQTKELLEGYLQVRGDHSDYLFVNRSGNHLTPRYIQMMIKDYAKAAGIKKKVTPHILR 281

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYT 323
              AT     G     +    G   +   + YT
Sbjct: 282 HSFATHLLKNGVDIRAIQQLLGHSNLSTTQIYT 314


>gi|312621789|ref|YP_004023402.1| integrase family protein [Caldicellulosiruptor kronotskyensis 2002]
 gi|312202256|gb|ADQ45583.1| integrase family protein [Caldicellulosiruptor kronotskyensis 2002]
          Length = 286

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 47/284 (16%), Positives = 104/284 (36%), Gaps = 25/284 (8%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--------DYRKITTKHIRSGVESRK 127
            +Y K+  +     N+  S+    +  +R   D         +  +      +S +  + 
Sbjct: 6   EDYLKTQDFT---ENTIKSYTKDVELFMRWYVDTTGQEFLPENLTEFDLVEYKSYLLRKN 62

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE--GIRPWTKEDMQQFK-S 184
           H PS+  + + S+R    + + +  +  +    +++ K  T         K+D+ +F+ +
Sbjct: 63  HKPSTVNRSIISLRKFVHFLLDRGLLNKDISTRLKQVKDTTRNLSPVVLDKKDIYKFRRT 122

Query: 185 FWSEGSQPRLAF-EFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK-TQKTGTIITVELPDG 240
               G    +AF E LL +G+R S++    ++ ++       +K   K  +   V L   
Sbjct: 123 VHQFGKTRDVAFVELLLNTGMRISEAINLKLEDVEISERKGKVKIWGKGRSYREVPLNSD 182

Query: 241 ----FMKLLAMTP-IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSAT 295
                 + L   P       F+ +  +K+         +  A  AG+    H +R F A 
Sbjct: 183 ARKYLSEYLKKRPYSETNYLFVTSTGKKLTRNSAYKIIQKYAKLAGLCLHPHMLRHFFAQ 242

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
              D G   +++    G + ++    Y K     +L  +    +
Sbjct: 243 TLIDKGLNIYDVQQLLGHQRIETTLRYKKP--NTKLQEEMVENL 284


>gi|261419412|ref|YP_003253094.1| site-specific tyrosine recombinase XerC [Geobacillus sp. Y412MC61]
 gi|297530613|ref|YP_003671888.1| tyrosine recombinase XerC [Geobacillus sp. C56-T3]
 gi|319766227|ref|YP_004131728.1| tyrosine recombinase XerC [Geobacillus sp. Y412MC52]
 gi|261375869|gb|ACX78612.1| tyrosine recombinase XerC [Geobacillus sp. Y412MC61]
 gi|297253865|gb|ADI27311.1| tyrosine recombinase XerC [Geobacillus sp. C56-T3]
 gi|317111093|gb|ADU93585.1| tyrosine recombinase XerC [Geobacillus sp. Y412MC52]
          Length = 300

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 45/284 (15%), Positives = 89/284 (31%), Gaps = 28/284 (9%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE------SR 126
            L  EY +     + +  + + +    +Q  R   +     +                 +
Sbjct: 9   QLFMEYLQIE--KNYSQYTIVCYRRDIEQFFRFMDEEGIGALNEVSYSDVRLYLTKLYEQ 66

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK--- 183
           +    S  + ++S+R  +K+ +R+  VA NP      PK++ +       ++++      
Sbjct: 67  QLASRSVARKISSLRSFYKFLLREGRVAENPFALATLPKKEQKIPNFLYPKELEALFLVN 126

Query: 184 -SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVE----- 236
               + G +     E L  +G R S+ C   +  +       +   K      V      
Sbjct: 127 DENTALGQRNAALLELLYATGARVSECCHIQLSDVDFVAETVLIHGKGNKQRYVPFGRPA 186

Query: 237 -------LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAH 287
                  +  G  +L    P      F+N     +               A +  N S H
Sbjct: 187 REALERYIHRGRRELTRKLPADHRYLFVNARGNPLTPRGVRHILDRIVEAAALTQNISPH 246

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330
            +R   AT   + GA    +    G   +   + YT    DR+R
Sbjct: 247 VLRHTFATHLLNEGADLRSVQELLGHAHLSSTQVYTHVTKDRLR 290


>gi|172057895|ref|YP_001814355.1| integrase family protein [Exiguobacterium sibiricum 255-15]
 gi|171990416|gb|ACB61338.1| integrase family protein [Exiguobacterium sibiricum 255-15]
          Length = 292

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 41/255 (16%), Positives = 89/255 (34%), Gaps = 16/255 (6%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS---GVESRKHTPSSAIQFLTSMR 141
             L+ N+  S++    Q      D     I     R     +  +K + S+  Q ++ ++
Sbjct: 22  RQLSPNTGRSYDQTLRQYAAFCLDHQLGSIELATARRYLFALYDQKASKSTIAQKVSCLK 81

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFWSEGSQPRLAFE 197
              ++ V ++   +NP   ++ PKR           +    ++ F++  + G +     E
Sbjct: 82  QFGRF-VTRDTNDVNPFEGLKAPKRVQTLPTFLVPSEYERFLEVFRTSDALGVRNVALIE 140

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-ELPDGFMKLL-----AMTPIG 251
            L  +G+R S+     V+ L +++  +     G    +  +     K L        P  
Sbjct: 141 LLYATGMRVSELAGLNVKDLDSDLEYVHVYGKGRKERITPIGSFARKALTDYLAERQPTE 200

Query: 252 KE--TFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMA 309
            E    F++   +++         K        + + H +R   AT   + GA    +  
Sbjct: 201 DEEQAVFLSRSGRRLTTDGIRKILKKADPFLSKHVTPHALRHSFATDLLERGADLRAVQE 260

Query: 310 TYGWKTVDQAETYTK 324
             G  ++     YT 
Sbjct: 261 LLGHASLSTTGQYTH 275


>gi|188586009|ref|YP_001917554.1| integrase family protein [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|254799348|sp|B2A335|XERC_NATTJ RecName: Full=Tyrosine recombinase xerC
 gi|179350696|gb|ACB84966.1| integrase family protein [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 299

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 47/274 (17%), Positives = 99/274 (36%), Gaps = 28/274 (10%)

Query: 85  GSLAVNSRISFESYF----DQIIRKSGDFDYRKITTKHIRSGVESRKHT---PSSAIQFL 137
            +L+  +  ++        +    +   + + ++T KHIR  +   K      S+  + L
Sbjct: 16  KNLSHYTVDNYYKDLTQAENFFNEQFELYQWDEVTHKHIRHFLAYLKDKNYEKSTTARKL 75

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WSEGSQPRL 194
           +++R LFK+  R+E +  N    +  PK++ +     + E+++   +       G + + 
Sbjct: 76  SAIRSLFKFLTREEKIRSNTSALLATPKKERKLPEFLSIEEVEMLINAPGDDPFGLRDKA 135

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-------------ITVELPDGF 241
             E    SG+R  +     +Q+L      +K    G I             I   L +  
Sbjct: 136 ILEVFYCSGIRLGELWGLDLQNLDLQTGYLKVTGKGNIERLAPLGSFALAAIEDYLYNAR 195

Query: 242 MKLLAMTPI--GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS 297
            +LL         +  F+N    +++        K    +       S H +R   AT  
Sbjct: 196 PELLKKNKSVENCDALFLNKFGTRISQRSIRRRVKKYVQQTASEHRVSPHSLRHSFATHL 255

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            + GA    +    G   +   + YT   ++ R+
Sbjct: 256 LEGGADLRAVQELLGHVNISTTQIYTH-VNQARM 288


>gi|89895059|ref|YP_518546.1| hypothetical protein DSY2313 [Desulfitobacterium hafniense Y51]
 gi|89334507|dbj|BAE84102.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 322

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 47/294 (15%), Positives = 91/294 (30%), Gaps = 45/294 (15%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRKHTPSSAI---QFLTS 139
             L+ N+R S+E    +          +        +   +   K+   SA    ++L +
Sbjct: 20  RGLSPNTRNSYERDLRKFTAFLQQRGKNIIACEGNDLFLFLLQEKNQGRSARTLARYLAT 79

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK----SFWSEGSQP--- 192
           +R  F + + +E    +P   +  PK +       ++  + +          EG +P   
Sbjct: 80  LRGFFAFLLGEEMREDDPTEYLSTPKLEQHLPHVLSEGSISKLMGEGGDRDKEGPKPGKS 139

Query: 193 --------------------RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT- 231
                                   E L   GLR S+     V  +     +++ +  G+ 
Sbjct: 140 SKKAGDSDSEGKDKGLLMRNMAMIEVLYGCGLRVSELVGLKVSDIIFETRTLRCRGKGSK 199

Query: 232 IITVELPDGFMKLLA----------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281
              V + +  +++L                 E  F+N+    +         K  A   G
Sbjct: 200 ERIVPIGEYALEVLQNYLEHDRERLRGKHKTEVLFLNSRGTALTRQGIWDILKKWAQTHG 259

Query: 282 V--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           V  N   H  R   AT   D GA    +    G   +   + YT  + +  L +
Sbjct: 260 VQENIYPHKFRHSFATHLLDHGADLRSVQEMLGHADIATTQIYTHLSRQRLLEV 313


>gi|260426671|ref|ZP_05780650.1| tyrosine recombinase XerD [Citreicella sp. SE45]
 gi|260421163|gb|EEX14414.1| tyrosine recombinase XerD [Citreicella sp. SE45]
          Length = 308

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 43/272 (15%), Positives = 85/272 (31%), Gaps = 32/272 (11%)

Query: 85  GSLAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
              A N+  ++             R +G    ++   +      E+     S+  + L+S
Sbjct: 18  RGAADNTTAAYARDLADFTRWLTARGAGLDTAQRADVEDYLVTCEAEGLAISTRARRLSS 77

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-------SEGSQP 192
           ++ L+++A  +   + NP + +  P +     +  + E++ +             +  + 
Sbjct: 78  IKQLYRFAFEEGLRSDNPAVQISGPGKPKRLPKTLSIEEVDRLIEAAASQGRTEDDRLRN 137

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKLLA----- 246
               + L  +G+R ++     V   + +    +   K G    V L       LA     
Sbjct: 138 ACLMQLLYATGMRVTELVTLPVSAARGDPRMLLIRGKGGKERMVPLSPPARVALATWLSR 197

Query: 247 ----------MTPIGKETFFINNDK-QKMNATQFSIWFKAKATKAGV---NKSAHGVRKF 292
                              F +  K   +    F +  K  A  AGV     + H +R  
Sbjct: 198 RDEQEAVAHAAGKPASVHLFPSRGKAGHLTRHAFYLLIKEIAVSAGVSPGKVTPHTLRHA 257

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324
            AT     GA    +    G   V   E YT 
Sbjct: 258 FATHLLQNGADLRAIQTFLGHADVATTEIYTH 289


>gi|118464686|ref|YP_882254.1| site-specific tyrosine recombinase XerD [Mycobacterium avium 104]
 gi|254775522|ref|ZP_05217038.1| site-specific tyrosine recombinase XerD [Mycobacterium avium subsp.
           avium ATCC 25291]
 gi|118165973|gb|ABK66870.1| tyrosine recombinase XerD [Mycobacterium avium 104]
          Length = 313

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 43/274 (15%), Positives = 83/274 (30%), Gaps = 35/274 (12%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS----GVESRKHTPSS-------- 132
             +A N+  S+     +  +   D     +            V  R+  P +        
Sbjct: 21  RGVAANTLSSYRRDLRRYTKHLSDRGISDLAKVGEDDVSDFLVALRRGDPDTGAAALSAV 80

Query: 133 -AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----- 186
            A + L ++R L ++   +    ++   +V  P       +  T + +            
Sbjct: 81  SAARALIAVRGLHRFLAAEGLAELDVARAVRPPTPGRRLPKSLTIDQVLALLEAAGGESP 140

Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFM 242
                  + R   E L  +G R S++    V  +       +   K G    V +    +
Sbjct: 141 ADGPLTLRNRALLELLYSTGARISEAVGLDVDDVDTQARSVLLRGKGGKQRLVPIGRPAV 200

Query: 243 KLL-----------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGV 289
             L           A    G    F+N    +++        +  A +AG+    S H +
Sbjct: 201 AALDAYLVRGRSELARRGRGTPAIFLNVRGGRLSRQSAWQVLQDAAERAGITSGVSPHML 260

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           R   AT   + GA    +    G  +V   + YT
Sbjct: 261 RHSFATHLLEGGADVRVVQELLGHASVTTTQIYT 294


>gi|319649574|ref|ZP_08003730.1| tyrosine recombinase [Bacillus sp. 2_A_57_CT2]
 gi|317398736|gb|EFV79418.1| tyrosine recombinase [Bacillus sp. 2_A_57_CT2]
          Length = 300

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 45/278 (16%), Positives = 94/278 (33%), Gaps = 26/278 (9%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS------GVESRK 127
           L  EY +     + +  +   ++    +      +     +T    +        +  +K
Sbjct: 11  LFIEYLQIE--KNYSQYTIEHYQHDISEFFMFMAEQAIADLTKVAYQDVRIYLTELYDKK 68

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----K 183
            +  S  + ++S+R  FK+ +R+E VA NP   V  PK + +    + + +M Q     +
Sbjct: 69  MSRKSVARKISSLRSFFKFLLREEKVAENPFALVSIPKAQKKLPEFFYEAEMMQLFNACE 128

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDGFM 242
           +    G + +   E L  +G+R S+  +  ++ L   + ++  +  G+    V       
Sbjct: 129 ASTPLGQRNKALLELLYATGIRVSECSQIRLKDLDMYLSTVLVRGKGSKERYVPFGSFAQ 188

Query: 243 KLLAMTPIGK-----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289
             L                  E  F+N     + A            K+ +      H +
Sbjct: 189 DALDTYINHGREKLLANGNVQENLFLNARGGPLTARGIRTILDRIIEKSSLTGKIHPHML 248

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           R   AT     GA    +    G   +   + YT   +
Sbjct: 249 RHTFATHLMANGADMRTVQELLGHAFLSSTQVYTHVTN 286


>gi|240948880|ref|ZP_04753236.1| site-specific tyrosine recombinase XerC [Actinobacillus minor
           NM305]
 gi|240296695|gb|EER47306.1| site-specific tyrosine recombinase XerC [Actinobacillus minor
           NM305]
          Length = 300

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 35/260 (13%), Positives = 87/260 (33%), Gaps = 21/260 (8%)

Query: 85  GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLT 138
             ++ ++  +++     +    ++     ++++    IR  +     +     S    L 
Sbjct: 20  KQVSPHTLSNYQRQLQAVCAMLKQQQISSWQEVDASVIRWILSQSHKQGLGAKSIGVRLV 79

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF---KSFWSEGSQPRLA 195
           ++R  F + V+ E +  NP L ++ PK      +    E + Q    ++      +    
Sbjct: 80  ALRQWFAYLVKNEQLQANPALGIKAPKVGRHLPKNVDAEQVAQLLNTEATKPLEIRDLAM 139

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLLA 246
            E +  SGLR S+     +  +  +   ++    G    +          +       + 
Sbjct: 140 MELMYSSGLRLSELQGLDLDRMDLSTREVRLLGKGNKERIVPIGSKALEAIHRWLEVRMR 199

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATA 304
             P      F+NN   +++     +  +    K G+  +   H +R   AT   +     
Sbjct: 200 FNP-QDNAVFLNNRGGRLSHRSIQLIMEKWGRKQGLETHLHPHKLRHSFATHMLEGSGDL 258

Query: 305 HELMATYGWKTVDQAETYTK 324
             +    G  ++   + YT 
Sbjct: 259 RAVQELLGHSSLATTQIYTH 278


>gi|327405762|ref|YP_004346600.1| integrase family protein [Fluviicola taffensis DSM 16823]
 gi|327321270|gb|AEA45762.1| integrase family protein [Fluviicola taffensis DSM 16823]
          Length = 370

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 44/266 (16%), Positives = 94/266 (35%), Gaps = 17/266 (6%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR----SGVESRKHTP 130
           I+ +         + ++  ++       +R  G      IT   +       + ++K + 
Sbjct: 98  IAVFVAYMQRTRYSESTIKTYSESIGVFLRFVGVKSTNLITNDDLAQFNNEYIIAKKLSA 157

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           S   Q L ++++  K  V    V ++P   V+RP+         +K++++Q   + +   
Sbjct: 158 SYQNQVLNAVKLFCK--VHAG-VKLDP-ELVKRPRSAKTLPNVLSKQEVKQLL-YATTNL 212

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVEL----PDGFMKL 244
           + R+    +   GLR S+      + +     +  I   K      V L     +   + 
Sbjct: 213 KHRMMLSVIYACGLRRSELLSLQPKDILSDRLLIHIHQAKGKKDRVVPLSKLLLEQLREY 272

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302
             +    K  F      +K       +  K   TK  + K  + H +R   AT   ++G 
Sbjct: 273 YKIYRPIKWIFEGEKPGEKYGERSLQLVLKRALTKTNIKKDVTLHWLRHSYATHLLESGT 332

Query: 303 TAHELMATYGWKTVDQAETYTKGADR 328
               +    G K+    E YT  +++
Sbjct: 333 DIRFIQELLGHKSSTTTEIYTHVSNK 358


>gi|15966434|ref|NP_386787.1| site-specific tyrosine recombinase XerD [Sinorhizobium meliloti
           1021]
 gi|307318393|ref|ZP_07597828.1| tyrosine recombinase XerD [Sinorhizobium meliloti AK83]
 gi|34222988|sp|Q92ME3|XERD_RHIME RecName: Full=Tyrosine recombinase xerD
 gi|15075705|emb|CAC47260.1| Probable integrase/recombinase DNA recombination protein
           [Sinorhizobium meliloti 1021]
 gi|306896075|gb|EFN26826.1| tyrosine recombinase XerD [Sinorhizobium meliloti AK83]
          Length = 311

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 47/282 (16%), Positives = 96/282 (34%), Gaps = 29/282 (10%)

Query: 72  KWLISEYRKS-AHWGSLAVNSRISFESYFDQII-----RKSGDFDYRKITTKHIRSGVES 125
              +  + +  +     A N+  S+E   +        R +G  D      +   S +  
Sbjct: 6   AAYVEAFLEMMSAERGAAANTLQSYERDLEDARSFLRSRGTGLTDASADDLRSYLSHLAG 65

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF--- 182
           +    SS  + L+++R  +K+   +     +P   ++ PK+     +  + ED+ +    
Sbjct: 66  QGFKASSQARRLSALRQFYKFLYAEGLRTDDPTGILDAPKKARTLPKTLSIEDVTRLIGQ 125

Query: 183 -KSFWSEGS-------QPRLAFEFLLYSGLRCSDSCRAGVQHL-QNNIFSIKTQKTGTII 233
            ++    GS       +     E L  +G+R S+        L QN  F I   K     
Sbjct: 126 AEAEAKSGSDDVMAKLRMHALIELLYATGMRVSELVSLPASVLAQNGRFLIIRGKGNKER 185

Query: 234 TVELPDGFMKLLAMTP------IGKETFFINNDKQ--KMNATQFSIWFKAKATKAGVNK- 284
            V L    ++ +               +   ++ +   +    F+   K+ A +AG+   
Sbjct: 186 LVPLSQAAIRAMRAYGEALQEESADSPWLFPSNGKSGHLPRQVFARDLKSLAARAGIRVA 245

Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             S H +R   A+     GA    +    G   +   + YT 
Sbjct: 246 AISPHVLRHAFASHLLANGADLRAVQELLGHSDISTTQIYTH 287


>gi|16803317|ref|NP_464802.1| hypothetical protein lmo1277 [Listeria monocytogenes EGD-e]
 gi|224499052|ref|ZP_03667401.1| hypothetical protein LmonF1_04845 [Listeria monocytogenes Finland
           1988]
 gi|224501778|ref|ZP_03670085.1| hypothetical protein LmonFR_04567 [Listeria monocytogenes FSL
           R2-561]
 gi|254829966|ref|ZP_05234621.1| hypothetical protein Lmon1_01355 [Listeria monocytogenes 10403S]
 gi|255016911|ref|ZP_05289037.1| hypothetical protein LmonF_02001 [Listeria monocytogenes FSL
           F2-515]
 gi|284801662|ref|YP_003413527.1| hypothetical protein LM5578_1415 [Listeria monocytogenes 08-5578]
 gi|284994804|ref|YP_003416572.1| hypothetical protein LM5923_1368 [Listeria monocytogenes 08-5923]
 gi|34222941|sp|Q8Y7K0|XERC_LISMO RecName: Full=Tyrosine recombinase xerC
 gi|16410693|emb|CAC99355.1| codV [Listeria monocytogenes EGD-e]
 gi|284057224|gb|ADB68165.1| hypothetical protein LM5578_1415 [Listeria monocytogenes 08-5578]
 gi|284060271|gb|ADB71210.1| hypothetical protein LM5923_1368 [Listeria monocytogenes 08-5923]
          Length = 300

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 38/273 (13%), Positives = 96/273 (35%), Gaps = 27/273 (9%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK------ITTKHIRSGVESRKHTP 130
           +Y  S    + +VN+  ++E+      R   +           +  +   + ++ +  + 
Sbjct: 13  DYLHSER--NYSVNTSTAYENDLLDFRRFLNEQAITTYQQVTFLDVRIYLTELKQKSFSR 70

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-----FKSF 185
           ++  + ++S+R  + + +R+  +  NP   V   K +    + +  E+M+      ++  
Sbjct: 71  TTVARKISSLRSFYTFLLRENVINENPFTYVSHAKNQLRLPKFFYSEEMEALFQVVYEDN 130

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVEL------- 237
            +   + R+  E L  +G+R S+     +  L  +  +I    K      V         
Sbjct: 131 ETLTLRDRVLLEVLYGTGIRVSECAGILLPDLDTSYQAILIRGKGNKERYVPFGAYAEDA 190

Query: 238 ----PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRK 291
                   + L++      +   +N+    +             +KA + +    H +R 
Sbjct: 191 ITDYLPERVNLMSRYKKSHDALLVNHYGDPLTTRGIRYCLTKIISKASLTRKIHPHMLRH 250

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK 324
             AT   + GA    +    G  ++   + YT 
Sbjct: 251 TFATDLLNNGADMRTVQELLGHASLSSTQIYTH 283


>gi|302345052|ref|YP_003813405.1| putative tyrosine recombinase XerC [Prevotella melaninogenica ATCC
           25845]
 gi|302149339|gb|ADK95601.1| putative tyrosine recombinase XerC [Prevotella melaninogenica ATCC
           25845]
          Length = 294

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 45/275 (16%), Positives = 103/275 (37%), Gaps = 24/275 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVE---S 125
           ++ ++     +  + +  + I++     +  R          +  I +  +R+ +E    
Sbjct: 3   MVEKFLDYIKFERNYSPMTVINYRKDLTEFERFYKELEPQLSWESIDSDIVRNWMEYMMD 62

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK-- 183
           R ++ SS  + L+++R  +++A+R++ +  +P   ++ PKR+    +   + +M++    
Sbjct: 63  RGNSASSVNRRLSALRSFYRFALRRKLIEKDPVHGLQGPKRQKTLPQFLKESEMERLLDS 122

Query: 184 SFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPD 239
             W++  +    R        +G+R S+      + + N    IK T K      V    
Sbjct: 123 KMWTDSYKDVLERTIIITFYVTGIRLSELIGLDDKDIDNVTCEIKVTGKRNKQRIVPFGK 182

Query: 240 GFMKLL--------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGV 289
               +         A      + FF     ++M   Q     K   +K      +S H +
Sbjct: 183 ELADVFAQYQEVRNATVKGDSKAFFQTEKGKRMTTAQVRTLVKKNLSKVSTLKKRSPHVL 242

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           R   AT   +  A    +    G +++   E YT 
Sbjct: 243 RHTFATAMLNHEAGLESVKKLLGHESLSTTEIYTH 277


>gi|325971099|ref|YP_004247290.1| tyrosine recombinase xerC [Spirochaeta sp. Buddy]
 gi|324026337|gb|ADY13096.1| Tyrosine recombinase xerC [Spirochaeta sp. Buddy]
          Length = 297

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 45/279 (16%), Positives = 94/279 (33%), Gaps = 20/279 (7%)

Query: 73  WLISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH------IRSGVES 125
            LI+ +  +     SL+ ++  ++E    Q+           +          +R  V+ 
Sbjct: 5   NLIATFLTTQKSIRSLSEHTLCAYERDLLQLQSYFTSLQVPLLEASREDARMFVRYLVKD 64

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
             +  SS  + ++  R  +   ++ E +A NP   +   ++        T E++    S 
Sbjct: 65  SSYAQSSINRKISCARSFYSSLLKAERIASNPFSLIAVHRQMDRLPSVLTVEEVTALLSL 124

Query: 186 WSEG---SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241
                  ++    F  L  +G R S+        ++     ++   K      V   D  
Sbjct: 125 PYADFPSTRDMTVFTLLYDTGCRISELLSIKESDIEWETKRVRVLGKGNKSRYVFFTDHC 184

Query: 242 MKLLAMTPIGK------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFS 293
             LL+     K           +N  +++  +     F    ++ G  K  + H +R   
Sbjct: 185 ASLLSSYLSLKHERFSNPLLICSNKGKQLPMSTVGSMFAVYRSRLGWQKPFTPHVLRHTY 244

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           AT   D GA    +    G +++   + YT    + RL 
Sbjct: 245 ATHLLDNGADIRLVQELLGHQSISTTQIYTH-VSKERLA 282


>gi|257465111|ref|ZP_05629482.1| site-specific tyrosine recombinase XerC [Actinobacillus minor 202]
 gi|257450771|gb|EEV24814.1| site-specific tyrosine recombinase XerC [Actinobacillus minor 202]
          Length = 300

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 35/260 (13%), Positives = 86/260 (33%), Gaps = 21/260 (8%)

Query: 85  GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLT 138
             ++ ++  +++     +    ++     ++++    IR  +     +     S    L 
Sbjct: 20  KQVSPHTLSNYQRQLQAVCAMLKQHQISSWQEVDASVIRWILSQSHKQGLGAKSIGVRLV 79

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF---KSFWSEGSQPRLA 195
           ++R  F + V+ E +  NP L ++ PK      +    E + Q    +       +    
Sbjct: 80  ALRQWFAYLVKHEQLPANPALGIKAPKVGRHLPKNVDAEQVAQLLNTEVTTPLEIRDLAM 139

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLLA 246
            E +  SGLR S+     +  +      ++    G    +          +       ++
Sbjct: 140 MELMYSSGLRLSELQGLDLDRMDLATREVRLLGKGNKERIVPIGSKALEAIHRWLEVRMS 199

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATA 304
             P      F+NN   +++     +  +    K G+  +   H +R   AT   +     
Sbjct: 200 FNP-QDNAVFLNNRGGRLSHRSIQLIMEKWGRKQGLETHLHPHKLRHSFATHMLEGSGDL 258

Query: 305 HELMATYGWKTVDQAETYTK 324
             +    G  ++   + YT 
Sbjct: 259 RAVQELLGHSSLATTQIYTH 278


>gi|308235900|ref|ZP_07666637.1| tyrosine recombinase XerD [Gardnerella vaginalis ATCC 14018]
 gi|311115004|ref|YP_003986225.1| integrase/recombinase [Gardnerella vaginalis ATCC 14019]
 gi|310946498|gb|ADP39202.1| integrase/recombinase [Gardnerella vaginalis ATCC 14019]
          Length = 335

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 43/294 (14%), Positives = 86/294 (29%), Gaps = 54/294 (18%)

Query: 85  GSLAVNSRISFESYF----DQIIRKSGDFDYRKITTKHIRSGVESRKH--------TPSS 132
             L+  +  S+ES      + +       D  +IT   I   V +            P +
Sbjct: 24  RGLSPKTVESYESDLTKYTNWLREARKINDVNEITQLDIEEYVRAMSSQAMSSQNLGPRT 83

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-------FKSF 185
             + + S+    K+ +    +A +P   V+ PK+        +  ++++       F S 
Sbjct: 84  IARRIASIHEWNKFMLSNAQIASDPSAEVKAPKQAEHLPDVLSISEVERVIDAAGGFGST 143

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------E 236
            +   + R   EFL  +G R S++     + +      ++    G    +          
Sbjct: 144 DAVSLRDRALVEFLYATGARVSEAVGLKFEDIDLTESVVRLSGKGQKQRLVPIGKCAVRA 203

Query: 237 LPDGFMKLLAMTPIGKE------------------------TFFINNDKQKMNATQFSIW 272
           L D       +     +                          F+N   + ++       
Sbjct: 204 LRDYLANARPILASRAQKSPATAKSRLKSPLNSSSKSANTHVIFLNKRGKSLSRQSAWEA 263

Query: 273 FKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
                  A + K    H +R   AT     GA    +    G  +V   + YT 
Sbjct: 264 ISRAGKMAKIGKELHPHTLRHSFATHLISGGADVRTVQELLGHASVTTTQIYTH 317


>gi|291531297|emb|CBK96882.1| Site-specific recombinase XerD [Eubacterium siraeum 70/3]
          Length = 476

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 53/316 (16%), Positives = 109/316 (34%), Gaps = 39/316 (12%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFE-SYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
               I  + ++    +L + +R  +E   ++ II + G     +++   ++      K  
Sbjct: 74  FGDWIDFWYQTYCRHTLRITTRTDYENRIYNHIIPEIGKILLNRLSQSDLQQFYAKEKTD 133

Query: 130 PSS----------AIQFLTSM----RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
                        + + +  +    R   + AV++  +  NP +  +   +K   ++  T
Sbjct: 134 GRKLHAKTYGKGLSDRTIRGIHANCRTALQRAVQEGLIRTNPAVGCKLLPKKAREMQVLT 193

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ------ 227
           + ++ +F     E     L F   L +G+R  +        L        I+ Q      
Sbjct: 194 QNEIIRFLHQAKEEGCYEL-FLLELGTGMRRGEILALKWSDLNFATGELRIERQVYIIKA 252

Query: 228 -------KTGTII-TVELPDGFMKLLAMTPIGKETFFI----NNDKQKMNATQFSIWFKA 275
                  KT   I TV LP   +K L       ++ ++     ++ +  N +      + 
Sbjct: 253 EVIISAPKTKASIRTVILPPSLLKTLVAYKETVDSEWMFPSPTDNGRPRNPSSVRKRLQL 312

Query: 276 KATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGAD-RIRLG 332
              +AG  K   H +R   AT++ + G     L AT G  +     + Y+   D   R  
Sbjct: 313 ILERAGCKKVRFHDLRHTFATMALEHGMDVKTLSATIGHVSSATTLDIYSHITDTMQRQA 372

Query: 333 IKNSRRISSVVDSDDP 348
             +  R     D+  P
Sbjct: 373 AVHIDRKIGGTDAQMP 388


>gi|238789383|ref|ZP_04633169.1| Tyrosine recombinase [Yersinia frederiksenii ATCC 33641]
 gi|238722526|gb|EEQ14180.1| Tyrosine recombinase [Yersinia frederiksenii ATCC 33641]
          Length = 263

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 40/240 (16%), Positives = 82/240 (34%), Gaps = 16/240 (6%)

Query: 101 QIIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINP 157
           +I  + G   ++ +    +RS V   K      SS    L+++R    W V Q  +  NP
Sbjct: 2   EIGEQMGLAHWQTLDAAQVRSLVSRSKRAGLHSSSLALRLSALRSFLDWLVSQGVLQANP 61

Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGV 214
              +  P+      +    +++ +            + R   E +  +GLR S+      
Sbjct: 62  AKGISTPRSGRHLPKNIDVDEVDKLLDIDLNDPLAVRDRAMLEVMYGAGLRLSELVGMNC 121

Query: 215 QHLQNNIFSIKTQKTGTI--------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA 266
           +H+      +     G+           V   + ++ L  +     +  F+ N  ++++A
Sbjct: 122 KHVDLASGEVWVMGKGSKERKVPIGKTAVTWLEHWLALRELFEPQDDAIFLANTGKRISA 181

Query: 267 TQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
                 F     K GV  +   H +R   AT   ++      +    G   +   + YT 
Sbjct: 182 RNVQKRFAEWGVKQGVSSHIHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTH 241


>gi|256821403|ref|YP_003145366.1| tyrosine recombinase XerC [Kangiella koreensis DSM 16069]
 gi|256794942|gb|ACV25598.1| tyrosine recombinase XerC [Kangiella koreensis DSM 16069]
          Length = 299

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 44/273 (16%), Positives = 105/273 (38%), Gaps = 23/273 (8%)

Query: 75  ISEYR-KSAHWGSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIR---SGVESRK 127
           I  Y  +  H    + ++  ++    +++      +G  ++++ITT+ IR   +    + 
Sbjct: 5   IQRYLNRLLHEKRYSEHTVNNYRRQLERLLAFCHDAGYSNWQQITTQDIRMLIAKRHRQG 64

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            +PSS+   L++MR   ++ + ++ + +NP + V  PK+     +    + +  F     
Sbjct: 65  ASPSSSALQLSAMRRFLEFLLSEKKITVNPAVGVRGPKKAKRLPKNIDVDSLNHFLDQMP 124

Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-VELPDGFM 242
           E      + +   E L  SG+R ++     +  L  +  S++    G  +  V   +   
Sbjct: 125 EDEPIEVRDKAMMELLYSSGIRLAELSAMDIDDLSFSDQSLRVLGKGNKVREVPFGNSSK 184

Query: 243 KLLA---------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRK 291
           K+L+              ++  F++    ++              K G+N     H +R 
Sbjct: 185 KVLSLWLKERNNFAKNSDEKALFLSQQGNRLTNRAIQQRLAHWGKKLGLNDRLHPHKLRH 244

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK 324
             AT   ++ +    +    G  ++   + YT 
Sbjct: 245 SCATHVLESSSDLRAVQELLGHASISTTQIYTH 277


>gi|289705629|ref|ZP_06502018.1| tyrosine recombinase XerD [Micrococcus luteus SK58]
 gi|289557653|gb|EFD50955.1| tyrosine recombinase XerD [Micrococcus luteus SK58]
          Length = 338

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 48/314 (15%), Positives = 89/314 (28%), Gaps = 39/314 (12%)

Query: 49  SALTGSTPKREYINSPRKKPTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQII---R 104
           +A      +       R   + L      + +       LA N+  ++    ++      
Sbjct: 6   AARGSGEAEARGSRGGRGAESALAAPFRRHLEHLAVERGLAANTLAAYRRDLERYRRWLE 65

Query: 105 KSGDFDYRKITTKHIRSGVES--------RKHTPSSAIQFLTSMRVLFKWAVRQEYVAIN 156
             G      +   H+   + +        R     SA + L ++R L ++   +     +
Sbjct: 66  AHGVRAPADVDPGHVSGFLRALGTGEDGGRPLAVRSAARVLAAVRGLHRFWALEGLTPAD 125

Query: 157 PCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRA 212
           P   V  PK      +    E +             G + R   EFL  +G R S+    
Sbjct: 126 PARDVHPPKPGDRLPKALPVEQVTALLEAVPVDTPAGLRDRALLEFLYGTGARISEVVGL 185

Query: 213 GVQHL--------QNNIFSIKT-QKTGTIITVELPDGFMKLLAMT------------PIG 251
            V  +              ++   K      V +       L                  
Sbjct: 186 DVDDVVGLAQTGDDGGQPVVRLFGKGSKERVVPIGSYAAAALDAWLVRGRPTIMTGVTRS 245

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMA 309
               F+N    +++        K  A +AG+  + S H +R   AT     GA    +  
Sbjct: 246 TPALFVNARGGRLSRQSAWAVLKRAAERAGLEADVSPHTLRHCFATHLLAGGADVRVVQE 305

Query: 310 TYGWKTVDQAETYT 323
             G  +V   + YT
Sbjct: 306 LLGHASVTTTQVYT 319


>gi|209965952|ref|YP_002298867.1| tyrosine recombinase XerD [Rhodospirillum centenum SW]
 gi|209959418|gb|ACJ00055.1| tyrosine recombinase XerD [Rhodospirillum centenum SW]
          Length = 330

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 54/296 (18%), Positives = 104/296 (35%), Gaps = 35/296 (11%)

Query: 85  GSLAVNSRISFESYFDQ----IIRKSGDFDYRKITTKHIRSGVESR----KHTP---SSA 133
              A N+R ++          +  + G     + +T  +R+ +E        TP    + 
Sbjct: 34  RGAAANTRDAYARDLRDVAAFLAARRGGTALDRASTDDLRAYLEHLHRDTGKTPSAGRTV 93

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-----SE 188
            + L+++R  +++ V +   A +P   ++ PK      +  T+ D+             E
Sbjct: 94  ARRLSALRQYYRFLVSEGLRAEDPAAVLDGPKPGRSLPKILTEADVALLLEGAARRGGPE 153

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHL-QNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
           G +     E L  +GLR S+     +  L ++    +   K G    V L     + LA 
Sbjct: 154 GRRLTALLELLYATGLRVSELVGLPLAALTRDGRALVVRGKGGKERMVPLSQPAKEALAA 213

Query: 248 TPIGKETFFI--------------NNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVR 290
               +  F +               +    +   +F    K  A + G++    S H +R
Sbjct: 214 CLPDRPYFMVPGREARQQGLLFPSRSAAGVLTRQRFGQLMKELALEVGLDPGKVSPHVLR 273

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSRRISSVVDS 345
              AT   D GA    +    G   +   + YT  A DR+R  ++    ++    S
Sbjct: 274 HCFATHLLDHGADLRSVQKMLGHADIGTTQIYTHVAGDRLRRTVETHHPLAKRRGS 329


>gi|126737600|ref|ZP_01753330.1| tyrosine recombinase XerD [Roseobacter sp. SK209-2-6]
 gi|126720993|gb|EBA17697.1| tyrosine recombinase XerD [Roseobacter sp. SK209-2-6]
          Length = 328

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 40/267 (14%), Positives = 89/267 (33%), Gaps = 32/267 (11%)

Query: 90  NSRISFESYFDQ-----IIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLF 144
           N+ +++             R+SG    ++   +      ++   + ++  + L++++ ++
Sbjct: 27  NTLLAYGRDLKDAASWLFHRESGFATAQRADIEAYLIACDAEGLSRATRARRLSALKQIY 86

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ---PRLA----FE 197
           ++A  + + + NP + +  P R  +  +     ++ +      +  +    RL      E
Sbjct: 87  RFAFEEGWRSDNPAIQISGPGRDKKLPKTLEVIEVDRLLDAARQTGRSPEDRLRNCCLME 146

Query: 198 FLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKLLAM--------- 247
            L  +G+R S+     V   + +    +   K G    V L       LA          
Sbjct: 147 LLYATGMRVSELVSLPVSSARGDPQMLLVLGKGGKERLVPLSPPARDALAAWLSVRDKAD 206

Query: 248 -----TPIGKETFFINNDKQ--KMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATIS 297
                       F   +  +   +    F +  K  A   GV+    + H +R   AT  
Sbjct: 207 EANRSKGHASSRFLFPSRGKAGHLTRHFFYLLIKDLAVTGGVDPEKVTPHTLRHAFATHL 266

Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324
              GA    +    G   +   E YT 
Sbjct: 267 LANGADLRAIQTLLGHADIATTEIYTH 293


>gi|320646833|gb|EFX15703.1| Site-specific recombinase, phage integrase family protein
           [Escherichia coli O157:H- str. 493-89]
 gi|320652110|gb|EFX20447.1| Site-specific recombinase, phage integrase family protein
           [Escherichia coli O157:H- str. H 2687]
          Length = 229

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 83/228 (36%), Gaps = 18/228 (7%)

Query: 6   RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
           +LPP V   +        Y  K   R        ES  + A    L     K E   + R
Sbjct: 12  KLPPKVYPNK------YSYVWKPTSR--------ESVTLTAIEDGLAALWKKYEETVNHR 57

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
            +  T   L  ++  SA++  L+  ++  +  +  ++    G      +  +HIR  ++ 
Sbjct: 58  DRAMTFGRLWEKFLASAYYSELSPRTQKDYLQHQKKLPAVFGKVLADSVKPEHIRRYMDK 117

Query: 126 RKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
           R   + + A    +SM  ++ W   + YV  NPC  V + K K       T ++ Q   S
Sbjct: 118 RGEQSKTQANHEKSSMSRVYSWGYERGYVKANPCAGVSKFKAKNRERYV-TDKEYQAVLS 176

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
                    +A E       R SD      + + N+   I+  KTG  
Sbjct: 177 VAPL--PVFIAMEIAYLCAARVSDVLSLKWEQIGNDGIFIQQGKTGKK 222


>gi|315024066|gb|EFT37068.1| Integrase, site-specific recombinase [Riemerella anatipestifer
           RA-YM]
          Length = 293

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 45/260 (17%), Positives = 96/260 (36%), Gaps = 22/260 (8%)

Query: 85  GSLAVNSRISFESYF----DQIIRKSGDFDYRKITTKHIRS---GVESRKHTPSSAIQFL 137
              ++N+  S+        D +    G      +  K IR+    +     +  +  + L
Sbjct: 15  KRYSLNTLASYSRDLQDFSDFVKETEGADTLISVDKKVIRNFVVYLSENNLSKRTINRKL 74

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ--QFKSFWSEGSQPRLA 195
           +++R  + + V+   ++ +P  +V   K   E   P+++++M+  Q      +    +L 
Sbjct: 75  SALRSFYIYLVKLGIISASPMETVSSLKFYGEKQIPFSQKEMENLQNLLNEEKLLLNKLI 134

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDG--------FMKLL 245
            E L  +G+R S+ CR  ++ +    N   +   K   +  + + +           K  
Sbjct: 135 IELLYQTGMRKSELCRLALKDVDFIQNRIRV-VGKGNKMREIPISENIKRELKLYLEKER 193

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSAHGVRKFSATISADAGAT 303
             T    + FF+    QK+              A  +   KS H +R   AT   + GA 
Sbjct: 194 KPTKENLDYFFVRESGQKLTGKFVYSVVNDYLSAVTSKKKKSPHVLRHSFATHVLENGAE 253

Query: 304 AHELMATYGWKTVDQAETYT 323
             ++    G  ++   + YT
Sbjct: 254 IAQVKEILGHASLASTQVYT 273


>gi|295133148|ref|YP_003583824.1| tyrosine type site-specific recombinase [Zunongwangia profunda
           SM-A87]
 gi|294981163|gb|ADF51628.1| tyrosine type site-specific recombinase [Zunongwangia profunda
           SM-A87]
          Length = 375

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 48/257 (18%), Positives = 93/257 (36%), Gaps = 11/257 (4%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFL 137
           Y         +V++  ++ ++F++ I      D   +    IR  ++S      S     
Sbjct: 110 YLLKLELKRYSVSTIKTYVTFFEKFINHYSQRDIDSLDECEIRLFLQSLIQENKSNSYIN 169

Query: 138 TSMRVL-FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196
            ++  + F + V       N    +ERP+R+    +  ++E++       +   + R   
Sbjct: 170 QAINAIKFNYEVVCGM--PNRFYDMERPRREHRLPQVISREEIFAIIEN-TNNIKHRCIV 226

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLLAMTPIG--- 251
           E L  SGLR S+     +Q + +      IK  K        L +  +  L         
Sbjct: 227 ELLYSSGLRRSELLNLKLQDIDSKRMLIKIKAGKGNKDRFTILSEKCLAHLRQYYRKWKP 286

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMA 309
           +   F     ++ +        K  ++KA +NK  S H +R   AT   ++G    ++  
Sbjct: 287 EIYLFEGQPGKQYSGASVLKVVKNASSKAKLNKNISPHILRHSFATHLLESGVDLRKIQV 346

Query: 310 TYGWKTVDQAETYTKGA 326
             G  +    E YT  A
Sbjct: 347 LLGHGSTKTTEIYTHVA 363


>gi|254508806|ref|ZP_05120917.1| tyrosine recombinase XerC [Vibrio parahaemolyticus 16]
 gi|219548263|gb|EED25277.1| tyrosine recombinase XerC [Vibrio parahaemolyticus 16]
          Length = 310

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 39/268 (14%), Positives = 95/268 (35%), Gaps = 22/268 (8%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSGV---ESRKHTP 130
           EY +S     L+++++ +++   + + +   + G  D+ ++ +  +R             
Sbjct: 21  EYLRSE--KGLSLHTQRNYKQQLETMAQHLVQLGLKDWSQVDSAWVRQLASKGMRDGMKA 78

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WS 187
           SS    L+S+R  F + + +  ++ NP   V  P++K    +    +++ Q         
Sbjct: 79  SSLATRLSSLRSFFDFLILRGEMSANPAKGVSAPRKKRPLPKNLDVDEVGQLLEVNEDDP 138

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLL- 245
              + R   E +  +GLR ++     V+ +      I+   K      V       + + 
Sbjct: 139 LSIRDRAMMEMMYGAGLRLAELVSINVKDVSFFSGEIRVVGKGDKERKVPFSGMASEWVG 198

Query: 246 -------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATI 296
                   +    +   F++    +++             K  V  + S H +R   AT 
Sbjct: 199 KWMKVRGTLAKSDEPALFVSKLGVRISHRNVQKRMAEWGQKQAVASHISPHKLRHSFATH 258

Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324
             ++      +    G + +   + YT 
Sbjct: 259 VLESSNNLRAVQELLGHENISTTQIYTH 286


>gi|319401458|gb|EFV89668.1| tyrosine recombinase XerC [Staphylococcus epidermidis FRI909]
          Length = 296

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 34/265 (12%), Positives = 94/265 (35%), Gaps = 20/265 (7%)

Query: 85  GSLAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
            + +  +  S+     Q              +     ++  + + S +   ++  + +++
Sbjct: 16  RNFSAYTLKSYHDDLVQFNNFLEREHLQLETFEYKDARNYLAFLYSNQLKRTTVSRKIST 75

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KSFWSEGSQPRLA 195
           +R  +++ + Q+   INP + +  PK++    + + +E+M+      +    +G + ++ 
Sbjct: 76  LRTFYEFWMTQDNSIINPFVQLVHPKKEKYLPQFFYEEEMEALFQTVEHDNKKGIRDKVI 135

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE--------LPDGFMKLLA 246
            E L  +G+R S+     ++ +  N+  +K   K      +         +     +   
Sbjct: 136 IELLYATGIRVSELINIKLKDIDMNLPGVKVLGKGNKERFIPFGEFCRQSIERYLEEFQP 195

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATK-AGV-NKSAHGVRKFSATISADAGATA 304
                 +   +N     +              + AGV +   H +R   AT   + GA  
Sbjct: 196 KQLANHDYLIVNMKGDPITERGVRYVLNDVVKRTAGVNDIHPHKLRHTFATHLLNQGADL 255

Query: 305 HELMATYGWKTVDQAETYTKGADRI 329
             + +  G   +     YT  +++ 
Sbjct: 256 RTVQSLLGHVNLSTTGRYTHVSNQQ 280


>gi|242242534|ref|ZP_04796979.1| tyrosine recombinase XerC [Staphylococcus epidermidis W23144]
 gi|242233961|gb|EES36273.1| tyrosine recombinase XerC [Staphylococcus epidermidis W23144]
          Length = 286

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 34/265 (12%), Positives = 93/265 (35%), Gaps = 20/265 (7%)

Query: 85  GSLAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
            + +  +  S+     Q              +     ++  + + S +   ++  + +++
Sbjct: 6   RNFSEYTLKSYHDDLVQFNNFLEREHLQLETFEYKDARNYLAFLYSNQLKRTTVSRKIST 65

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KSFWSEGSQPRLA 195
           +R  +++ + Q    INP + +  PK++    + + +E+M+      +    +G + ++ 
Sbjct: 66  LRTFYEFWMTQNNSIINPFVQLVHPKKEKYLPQFFYEEEMEALFQTVEHDNKKGIRDKVI 125

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE--------LPDGFMKLLA 246
            E L  +G+R S+     ++ +  N+  +K   K      +         +     +   
Sbjct: 126 IELLYATGIRVSELINIKLKDIDMNLPGVKVLGKGNKERFIPFGEFCRQSIERYLEEFQP 185

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATK-AGV-NKSAHGVRKFSATISADAGATA 304
                 +   +N     +              + AGV +   H +R   AT   + GA  
Sbjct: 186 KQLANHDYLIVNMKGDPITERGVRYVLNDVVKRTAGVNDIHPHKLRHTFATHLLNQGADL 245

Query: 305 HELMATYGWKTVDQAETYTKGADRI 329
             + +  G   +     YT  +++ 
Sbjct: 246 RTVQSLLGHVNLSTTGRYTHVSNQQ 270


>gi|269123142|ref|YP_003305719.1| integrase family protein [Streptobacillus moniliformis DSM 12112]
 gi|268314468|gb|ACZ00842.1| integrase family protein [Streptobacillus moniliformis DSM 12112]
          Length = 287

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 41/275 (14%), Positives = 101/275 (36%), Gaps = 23/275 (8%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--TPS 131
           ++ +     +    A  +  S+ +      +K  +     IT+  I   +E  K   T +
Sbjct: 4   VNSFLDYLKFEKGNADKTIESYRNDLYTFFKKV-NKKVVDITSDDIYQYIEKLKEKYTYN 62

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF---KSFWSE 188
           + I+ ++S++  FK+   ++ +  +P   +   K++       + E++       +    
Sbjct: 63  TVIRKISSIKSFFKFCYIEKIIKNDPANKIHNLKKEKRLPNALSVEEINSIIQSFNHEPV 122

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT--QKTGTIITVELPDGF----- 241
             + +L  +FL+ +G R S+     ++ ++N+ F       K      V +         
Sbjct: 123 NRRNQLIVKFLVATGARISEVINLEIKDIENSDFEFAKLYGKGSKYRFVPIYLELEKEIK 182

Query: 242 ---MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATI 296
               ++       ++++ +      +    F       A   G+ K    H  R  +AT+
Sbjct: 183 EYIREIRPKIKGSEKSYLLF---PGIRRENFWKILNKHAQNVGIEKKIHPHLFRHSTATM 239

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
             + GA    +    G  ++   E YT   ++ +L
Sbjct: 240 MIENGADIRIVQELLGHASITTTEVYTH-VEKSKL 273


>gi|313836787|gb|EFS74501.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL037PA2]
 gi|314929805|gb|EFS93636.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL044PA1]
 gi|314972234|gb|EFT16331.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL037PA3]
          Length = 315

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 41/284 (14%), Positives = 91/284 (32%), Gaps = 27/284 (9%)

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVE 124
           P +L   + ++         + N+   + +            GD    KI T  +R+ + 
Sbjct: 15  PASLTVPVEDFCDHLSALRRSPNTIRGYRADLIDFMGHAHSHGDDALGKIGTSQVRAWLA 74

Query: 125 SRK---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
             +    +P++  +  ++ RV F+WA  +  +  +P  ++               +  + 
Sbjct: 75  DTRLAGASPATMQRRWSAARVFFRWAANEGLIDCDPTAALTSANVPKRLPATLGVDQARH 134

Query: 182 FKSFW---------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGT 231
                          +G++     E L   GLR  + C   +  +  +  + I T K   
Sbjct: 135 ILDGAVAQARSDETPQGARDAAILEVLYGGGLRVGELCGLDLGDVDRSRQTVIVTGKGDK 194

Query: 232 IITVELPDGFMKLLA---------MTPIGKETFFINNDKQKMNATQFSIWFKAKATK--A 280
             TV +    +  +            P   +  F+     +++         A       
Sbjct: 195 ERTVPMGTPALHAIDTWLPRRAEWAGPDSGQALFLGARGGRIDQRVVRRVVHAHMRSEPD 254

Query: 281 GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             +   HG+R   AT   + GA    +    G +++   + YT 
Sbjct: 255 SPDLGPHGLRHAMATHLLEGGADLRTVQDILGHESLATTQIYTH 298


>gi|290894169|ref|ZP_06557140.1| integrase/recombinase XerC [Listeria monocytogenes FSL J2-071]
 gi|290556299|gb|EFD89842.1| integrase/recombinase XerC [Listeria monocytogenes FSL J2-071]
 gi|313609074|gb|EFR84788.1| tyrosine recombinase XerC [Listeria monocytogenes FSL F2-208]
          Length = 300

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 39/283 (13%), Positives = 98/283 (34%), Gaps = 27/283 (9%)

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK------ITTKHIR 120
           +   L+    +Y  S    + +VN+  ++E+      R   +           +  +   
Sbjct: 3   QEGKLEQQFLDYLHSER--NYSVNTSTAYENDLLDFRRFLNEQAIETYQQVTFLDVRIYL 60

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
           + ++ +  + ++  + ++S+R  + + +R+  +  NP   V   K +    + +  E+M+
Sbjct: 61  TELKQKSFSRTTVARKISSLRSFYTFLLRENVITENPFTYVSHAKNQLRLPKFFYSEEME 120

Query: 181 Q-----FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIIT 234
                 ++   +   + R+  E L  +G+R S+     +  L  +  +I    K      
Sbjct: 121 ALFQVVYEDNETLTLRDRVLLEVLYGTGIRVSECAGILLPDLDTSYQAILIRGKGNKERY 180

Query: 235 VEL-----------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
           V                  +L+       +   +N+    +             +KA + 
Sbjct: 181 VPFGVYAEDAITDYLPKRTELMTRYKKSHDALLVNHYGDPLTTRGIRYCLTKIISKASLT 240

Query: 284 KS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +    H +R   AT   + GA    +    G  ++   + YT 
Sbjct: 241 RKIHPHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTH 283


>gi|206895374|ref|YP_002247059.1| tyrosine recombinase XerC [Coprothermobacter proteolyticus DSM
           5265]
 gi|206737991|gb|ACI17069.1| tyrosine recombinase XerC [Coprothermobacter proteolyticus DSM
           5265]
          Length = 286

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 47/285 (16%), Positives = 103/285 (36%), Gaps = 15/285 (5%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
              L++++  +      + ++  ++     Q    +   D + +        +  +   P
Sbjct: 6   WAELLNQFLNTLEASGYSEHTLKAYYVDLKQYFMFTTSLDQKTVD--DYLMHLSRKGMAP 63

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WS 187
           +S  +FL+S+R    +  +Q Y    P + +   K   +  R   ++D+ +         
Sbjct: 64  TSLNRFLSSLRKFCSFLKKQGYEM--PIMELSGFKTGLKVPRVVLRDDISKLLELPENTP 121

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLA 246
              + +    FLL +G R S++    V+ +     S +   K     TV +P   +KLL 
Sbjct: 122 IELRDKALVWFLLGTGTRISEALSLKVEDIDFRTASCQVLGKGNKKRTVYIPSKALKLLK 181

Query: 247 MTP----IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADA 300
                  + +   F+N   Q +            + K G+      H +R   AT   + 
Sbjct: 182 RYIEVFNLTEGPLFLNMQGQGLTDRGARYILHKISKKYGLRDLVHPHTLRHTFATNLLEE 241

Query: 301 GATAHELMATYGWKTVDQAETYTKGADR-IRLGIKNSRRISSVVD 344
           GA   E+    G  ++   + YT  +   ++  I+  R+ +    
Sbjct: 242 GANLREIQELLGHSSLRSTQIYTHVSPVMVKEAIEAMRKEAKNKP 286


>gi|148552940|ref|YP_001260522.1| phage integrase family protein [Sphingomonas wittichii RW1]
 gi|148498130|gb|ABQ66384.1| phage integrase family protein [Sphingomonas wittichii RW1]
          Length = 301

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 51/269 (18%), Positives = 93/269 (34%), Gaps = 20/269 (7%)

Query: 75  ISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           I+++ +  A  G  A N+ +++ S         G       T      G E    + +S 
Sbjct: 7   IAQFLEMLAAEGGAARNTLLAYGSDLRGASELLGGGLVGADTAGLQTLGGEWMALSRTSV 66

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
            +  + +R  F +   +     +P  ++ RP  +    R  +  D+++      E  + R
Sbjct: 67  ARKASVLRRFFAFLEEEGIRRDDPSDALPRPAVQRALPRTLSHGDIERLFDTLEERRRDR 126

Query: 194 LA----------FEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPDGFM 242
            A           E L  SGLR ++        L+ +  F I   K G    V + D   
Sbjct: 127 HADPLTLRLIALVELLYGSGLRATELVSLPRHALRGDRPFLILRGKGGRERLVPISDRAR 186

Query: 243 ----KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSAT 295
               +  A  P  +   F +     ++  +     +  A +AG+     S H +R   AT
Sbjct: 187 MAVAEWGAHVPTDQPWLFPSGHG-HLSRVRLFQLVRELAAEAGIPPQRISPHVLRHAFAT 245

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTK 324
              + GA    L    G   +   + YT 
Sbjct: 246 HLLEGGADLRALQTMLGHADIATTQIYTH 274


>gi|226525271|gb|ACO70871.1| integrase family protein [uncultured Verrucomicrobia bacterium]
          Length = 294

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 39/262 (14%), Positives = 90/262 (34%), Gaps = 23/262 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK----HTPSSAIQFLTSM 140
            +++  +  +++    +  +   D +++ +T  H R  + +        P+  + F  ++
Sbjct: 17  RNVSPRTLTNYQHALSEFRKAMPDANWKTLTADHFRRYLFAMAKREMSKPTQRLHF-AAL 75

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM-QQFKSFWSE----------G 189
           R  +K+ V +  +  NP   V+ PK   +     T + + +  ++               
Sbjct: 76  RTFYKYLVERHGLETNPLKQVQLPKLDRKLPVVLTAKQVVELLEAPLKVDKQKQAPVWMP 135

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-----ELPDGFMKL 244
            +     E    SGLR ++     V  L     S++    G    V            K 
Sbjct: 136 FRDAAIMELFYSSGLRLAELVGLNVADLDVYTESVRVIGKGRKERVVPVGQPALLAVQKY 195

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGA 302
                +     FI+  + ++   +  +  +       +  N + H +R   AT   D GA
Sbjct: 196 RQEAKVHVGPLFISKLRTRLTPMRVWLVIQRYLPHTSIPVNVTPHKLRHSFATHLLDHGA 255

Query: 303 TAHELMATYGWKTVDQAETYTK 324
               + +  G  ++   + YT 
Sbjct: 256 DLRAVQSLLGHASLSTTQIYTH 277


>gi|239636270|ref|ZP_04677272.1| tyrosine recombinase XerC [Staphylococcus warneri L37603]
 gi|239597625|gb|EEQ80120.1| tyrosine recombinase XerC [Staphylococcus warneri L37603]
          Length = 297

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 39/262 (14%), Positives = 99/262 (37%), Gaps = 20/262 (7%)

Query: 88  AVNSRISFESYF----DQIIRKSGDF-DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRV 142
           + ++  S+        D + ++S D  D+     ++  S + S+    ++  + ++++R 
Sbjct: 19  SDHTLKSYHDDIVQFNDFLYQESLDLNDFEYKDARNYLSFLYSKNLKRTTVSRKISTLRT 78

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLAFEF 198
            +++ + Q+   +NP + +  PK++    + + +E+M+           +G + ++  E 
Sbjct: 79  FYEYWMTQDESVVNPFVQLVHPKKEQYLPQFFYEEEMEALFKTVDTDSKKGMRDKVILEL 138

Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE--------LPDGFMKLLAMTP 249
           L  +G+R S+      Q L   +  +K   K      +         +     +   +  
Sbjct: 139 LYATGIRVSELVHIKTQDLDMKLPGVKVLGKGNKERFIPFGEFCKQSIERYLKEFKPLKH 198

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKA-GV-NKSAHGVRKFSATISADAGATAHEL 307
           +  +   +N   Q +              +  GV N   H +R   AT   + GA    +
Sbjct: 199 VDHDYLIVNMQGQPITERGVRYVLNDVVKRTSGVTNIHPHKLRHTFATHLLNQGADLRTV 258

Query: 308 MATYGWKTVDQAETYTKGADRI 329
            +  G   +     YT  +++ 
Sbjct: 259 QSLLGHVNLSTTGKYTHVSNQQ 280


>gi|262172887|ref|ZP_06040565.1| tyrosine recombinase XerC [Vibrio mimicus MB-451]
 gi|261893963|gb|EEY39949.1| tyrosine recombinase XerC [Vibrio mimicus MB-451]
          Length = 310

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 35/268 (13%), Positives = 90/268 (33%), Gaps = 22/268 (8%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGV---ESRKHTP 130
            Y  S     L++ ++ +++   +   + + + G   + ++    +R  V   + +    
Sbjct: 22  AYLHSE--KGLSLYTQRNYKQQLETMARYLAQMGLTSWPQLDAAWVRQLVVLGKRQGMKA 79

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WS 187
           SS    L+S+R    + + +  +  NP   V  P+++    +    ++M Q         
Sbjct: 80  SSISTRLSSLRSFLDFLILRGELQANPAKGVSAPRKQRPLPKNLDVDEMAQLLEVSDDDP 139

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVE-------LP 238
              + R   E +  SGLR ++     V+ +  ++    +  +                + 
Sbjct: 140 LSIRDRAIMELMYGSGLRLAELVSIDVKDVNLRDGEIRVIGKGNKERKVWFAGQAQEWVG 199

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATI 296
                   +    +   F++    +++             K  V  + S H +R   AT 
Sbjct: 200 KWLKLRSQLANSDETALFVSKLGTRISHRSVQKRMAEWGQKQAVASHISPHKLRHSFATH 259

Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324
             ++      +    G + +   + YT 
Sbjct: 260 MLESSNNLRAVQELLGHENIATTQIYTH 287


>gi|34497827|ref|NP_902042.1| integrase/recombinase XerC [Chromobacterium violaceum ATCC 12472]
 gi|81655548|sp|Q7NVH1|XERC_CHRVO RecName: Full=Tyrosine recombinase xerC
 gi|34103683|gb|AAQ60044.1| integrase/recombinase XerC [Chromobacterium violaceum ATCC 12472]
          Length = 299

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 41/266 (15%), Positives = 89/266 (33%), Gaps = 18/266 (6%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV---ESRKHTPS 131
           I  + +       + ++  ++ +  + +         R  T   +R  +    ++  +  
Sbjct: 5   IRRFIEHLAVAGRSPHTLAAYRADIELLENMMQAKSARDATAAELRKALAKLHAQGLSSR 64

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW----TKEDMQQFKSFWS 187
           S  + L+S R  + W  R      NP   +  PKR     +      T   + + +    
Sbjct: 65  SLARRLSSWRQFYHWLQRNGEREDNPAAGLYAPKRDKLLPKALPVDGTAALLDRIEGESE 124

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLL 245
             ++ R  FE +   GLR S++    +  +   +++  I+  K G    V +    M  L
Sbjct: 125 LDARDRAIFELVYSCGLRLSETVALNLDDVDFSDSLLRIR-GKGGKERLVPIGAEAMLRL 183

Query: 246 AM------TPIGKETFFINNDKQKMNATQFSIWFKAKATK--AGVNKSAHGVRKFSATIS 297
                     + +   F+     ++   Q     +  A K  AG +   H +R   A+  
Sbjct: 184 RTWLGERSAGMDEPALFLGRHGHRLGGRQVEKRLRDWAIKTGAGQHVHPHMLRHSFASHM 243

Query: 298 ADAGATAHELMATYGWKTVDQAETYT 323
             +      +    G   +   + YT
Sbjct: 244 LQSSGDLRAVQELLGHANLSSTQIYT 269


>gi|168702311|ref|ZP_02734588.1| codV [Gemmata obscuriglobus UQM 2246]
          Length = 345

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 53/312 (16%), Positives = 98/312 (31%), Gaps = 17/312 (5%)

Query: 23  YYFR-KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKS 81
           +Y R +G    + +          A    L  +         P   P      +   + S
Sbjct: 16  WYVRFEGKLTSLGVKGKGNQEAAKAAFEKLRTTPKPPPITAGPVLLPQAFAQFLVACKLS 75

Query: 82  AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMR 141
                   N+   +E      +      +  ++T  HIR  +       ++    L S+ 
Sbjct: 76  -----RKPNTVARYEYDAGDFVNDHPTLEPAQVTADHIRQWLADLDVGQTTKAIMLRSVS 130

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW-TKEDMQQFKSFWSEGSQPRLAFEFLL 200
             F W V+++ +  NP   V RPK  +   +   ++ D ++     S   +       L 
Sbjct: 131 AFFGWLVKEDKLEKNPVKKVTRPKTASRSDKALISEADHKRLLEGASRDFRD--VLVVLH 188

Query: 201 YSGLRCSDSCRAGVQ--HLQNNIFSIKTQK---TGTIITVELPDGFMKLLAMTPIGKET- 254
            +G R  +  +   +  + ++ +  I   K   TG    V L      LL    +   T 
Sbjct: 189 GTGCRPGELQQITAETFNYKDRVVVITEHKTDHTGKPRPVYLTPELADLLHSKLVKYPTG 248

Query: 255 -FFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGW 313
                N          +   K    K GV   A+G R    T    +G +  ++ A  G 
Sbjct: 249 PLLRGNKGVPWTGRAITESMKKLRKKTGVKAIAYGYRHTFVTDGLKSGLSNSQVAALVGH 308

Query: 314 KTVDQAET-YTK 324
            T    +  Y+ 
Sbjct: 309 TTTAVIDRFYSH 320


>gi|328954140|ref|YP_004371474.1| Tyrosine recombinase xerC [Desulfobacca acetoxidans DSM 11109]
 gi|328454464|gb|AEB10293.1| Tyrosine recombinase xerC [Desulfobacca acetoxidans DSM 11109]
          Length = 310

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 48/266 (18%), Positives = 95/266 (35%), Gaps = 26/266 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVESRKHT--PSSAIQFLT 138
            SLA ++  ++ S   Q +             ++T + +R+ +  R      +S  + L 
Sbjct: 28  RSLAAHTVRNYLSDIGQFMEFWNYRRPGHSLGELTYQDLRAFLAERHRLNCKTSIARKLA 87

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKSFWSEGSQPRL 194
           ++R   K+  RQ  ++ N       PK +    +  T +++    +Q         + R 
Sbjct: 88  ALRTFCKFLTRQGLLSHNIAALTPTPKLEARLPKFLTIDEVFHLLEQTWGQTVLAVRDRA 147

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPDGFMKLLA------- 246
             E     GLR ++     + +L      +    K G    V +    ++ L        
Sbjct: 148 ILELFYSGGLRVAELVGLNLDNLDLPQHLAKVRGKGGKERLVIIGRQALQTLNSYLLVRR 207

Query: 247 --MTP----IGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISA 298
             +TP     G+E  F+N    ++ +   +   +  A KAG+    S HG+R   AT   
Sbjct: 208 ELITPDSPVSGREAVFLNYRGGRLTSRSVARLVEKWAIKAGLGQPLSPHGLRHTFATHLL 267

Query: 299 DAGATAHELMATYGWKTVDQAETYTK 324
           +  A    +    G   +   + Y  
Sbjct: 268 EGKADLRAVQELLGHAQLSTTQKYLH 293


>gi|15609783|ref|NP_217162.1| integrase [Mycobacterium tuberculosis H37Rv]
 gi|15842187|ref|NP_337224.1| phage integrase family protein [Mycobacterium tuberculosis CDC1551]
 gi|148662487|ref|YP_001284010.1| phage integrase family protein [Mycobacterium tuberculosis H37Ra]
 gi|148823839|ref|YP_001288593.1| integrase [Mycobacterium tuberculosis F11]
 gi|167966927|ref|ZP_02549204.1| hypothetical integrase [Mycobacterium tuberculosis H37Ra]
 gi|215404613|ref|ZP_03416794.1| integrase [Mycobacterium tuberculosis 02_1987]
 gi|215412442|ref|ZP_03421188.1| integrase [Mycobacterium tuberculosis 94_M4241A]
 gi|215446906|ref|ZP_03433658.1| integrase [Mycobacterium tuberculosis T85]
 gi|253798270|ref|YP_003031271.1| integrase [Mycobacterium tuberculosis KZN 1435]
 gi|254365312|ref|ZP_04981357.1| hypothetical integrase [Mycobacterium tuberculosis str. Haarlem]
 gi|254551701|ref|ZP_05142148.1| integrase [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
 gi|289553565|ref|ZP_06442775.1| integrase [Mycobacterium tuberculosis KZN 605]
 gi|289746449|ref|ZP_06505827.1| integrase [Mycobacterium tuberculosis 02_1987]
 gi|289758776|ref|ZP_06518154.1| phage integrase [Mycobacterium tuberculosis T85]
 gi|294994258|ref|ZP_06799949.1| integrase [Mycobacterium tuberculosis 210]
 gi|297635258|ref|ZP_06953038.1| integrase [Mycobacterium tuberculosis KZN 4207]
 gi|297732254|ref|ZP_06961372.1| integrase [Mycobacterium tuberculosis KZN R506]
 gi|298526121|ref|ZP_07013530.1| hypothetical integrase [Mycobacterium tuberculosis 94_M4241A]
 gi|306785454|ref|ZP_07423776.1| integrase [Mycobacterium tuberculosis SUMu003]
 gi|307085338|ref|ZP_07494451.1| integrase [Mycobacterium tuberculosis SUMu012]
 gi|313659587|ref|ZP_07816467.1| integrase [Mycobacterium tuberculosis KZN V2475]
 gi|1550687|emb|CAB02354.1| PROBABLE INTEGRASE [Mycobacterium tuberculosis H37Rv]
 gi|13882474|gb|AAK47038.1| phage integrase family protein [Mycobacterium tuberculosis CDC1551]
 gi|134150825|gb|EBA42870.1| hypothetical integrase [Mycobacterium tuberculosis str. Haarlem]
 gi|148506639|gb|ABQ74448.1| phage integrase family protein [Mycobacterium tuberculosis H37Ra]
 gi|148722366|gb|ABR06991.1| hypothetical integrase [Mycobacterium tuberculosis F11]
 gi|253319773|gb|ACT24376.1| integrase [Mycobacterium tuberculosis KZN 1435]
 gi|289438197|gb|EFD20690.1| integrase [Mycobacterium tuberculosis KZN 605]
 gi|289686977|gb|EFD54465.1| integrase [Mycobacterium tuberculosis 02_1987]
 gi|289714340|gb|EFD78352.1| phage integrase [Mycobacterium tuberculosis T85]
 gi|298495915|gb|EFI31209.1| hypothetical integrase [Mycobacterium tuberculosis 94_M4241A]
 gi|308329877|gb|EFP18728.1| integrase [Mycobacterium tuberculosis SUMu003]
 gi|308365129|gb|EFP53980.1| integrase [Mycobacterium tuberculosis SUMu012]
 gi|323718760|gb|EGB27919.1| integrase [Mycobacterium tuberculosis CDC1551A]
 gi|326904260|gb|EGE51193.1| integrase [Mycobacterium tuberculosis W-148]
 gi|328458042|gb|AEB03465.1| integrase [Mycobacterium tuberculosis KZN 4207]
          Length = 332

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 47/285 (16%), Positives = 95/285 (33%), Gaps = 10/285 (3%)

Query: 44  IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII 103
           + A+++A   S  K          P + +  I +Y  + +       +    ++      
Sbjct: 46  VEAFLAA-AKSQNKPPGPPPSLHAPPSWRRDIDDYLLNLNAAGQRPATIRLRKTVLCAAA 104

Query: 104 RKSGDFDYRKITTKHIRSGVESRKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162
              G      +T +H+   +  ++H +P     + +++R  F WA   + V      S+ 
Sbjct: 105 HGLG-RPPADVTAEHLLDWLGKQQHLSPEGRKTYRSTLRGFFVWAYEMDRVRDYVADSLP 163

Query: 163 RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222
           + +   +  RP   +  Q   +      +  L       +GLR +++ +A    L +   
Sbjct: 164 KVRCPKQPPRPAGDDVWQAALAKADR--RIELMIRLAGEAGLRRAEAAQAHTGDLMDGGL 221

Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
            +   K G    V + D    L+  TP G    F N     + A                
Sbjct: 222 LLVHGKGGKRRIVPISDYLAALIRDTPHG--YLFPNGTGGHLTAEHVGKLVSRALPG--- 276

Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           + + H +R   AT +         +    G  ++   E YT   D
Sbjct: 277 DATMHTLRHRYATRAYRGSHNLRAVQQLLGHASIVTTERYTALCD 321


>gi|298528636|ref|ZP_07016040.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298512288|gb|EFI36190.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
          Length = 414

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 54/320 (16%), Positives = 104/320 (32%), Gaps = 22/320 (6%)

Query: 44  IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII 103
           +     A      K + I S     TT   +  +Y  ++       +       Y   I 
Sbjct: 83  MENVRRAEDIKLKKEQEIAS-----TTFNIIWEKYFLNSQHEKAYKSWDTERHLYKKWIQ 137

Query: 104 RKSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVA-INPCL 159
              G+  + K+T  H+    +  +    +P S    L+ +R +F +A        ++P  
Sbjct: 138 PFIGEVFFTKVTAFHLEKIKKEMRDASLSPRSIGYALSVVRQVFCYASDHGIFEGVDPVS 197

Query: 160 SVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQ 218
            V+ P      IR  T  + +         SQ         L+ G R  +      Q + 
Sbjct: 198 LVKMPHYDNRRIRFLTHSEAEILLDVLCFSSQNTHDIALIALHCGPRAGEIFSLTWQDID 257

Query: 219 --NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK 276
               + + +  K   +  + +     K+L      + +  +  D+      + S  F+  
Sbjct: 258 FSQGLVTFRDTKNKYVRHIPITKRVRKMLERRSDDRSSALVFPDRNGGRRKKVSKAFERT 317

Query: 277 ATKAGVNKSA---------HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA- 326
             + G NK           H +R   A+    AG   + +    G K + Q E Y   A 
Sbjct: 318 IKELGWNKGIDDPRQKVVFHTLRHTCASWLVMAGVPLYTVKEYLGHKQISQTERYAHLAP 377

Query: 327 DRIRLGIKNSRRISSVVDSD 346
           D ++   +   +I+S     
Sbjct: 378 DSLKQATEALNKINSHKSEP 397


>gi|329923290|ref|ZP_08278774.1| phage integrase, N-terminal SAM domain protein [Paenibacillus sp.
           HGF5]
 gi|328941382|gb|EGG37674.1| phage integrase, N-terminal SAM domain protein [Paenibacillus sp.
           HGF5]
          Length = 311

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 45/296 (15%), Positives = 102/296 (34%), Gaps = 32/296 (10%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           L   Y K   +   A +++ ++       +         ++T   +   +   + + + A
Sbjct: 16  LFLSYMKDREY---AKDTQQAYLHDIKHFLNSLEGKPITEVTDIDVMYYLTQVRESGAGA 72

Query: 134 ---IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE-----GIRPWTKEDMQQFKSF 185
               +  +++R+ +K  +R +  +INP + +E+ K +         +P     +   +  
Sbjct: 73  RYRNRCQSAIRLFYKVMIRFKLASINPAMDIEKAKVEKNRQPTYLQKPILDACLNGIEGR 132

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKL 244
           +    +       + Y+GLR S+  +  +        SI    K      + LP    KL
Sbjct: 133 YKI--RDVTIIALMAYAGLRVSEIVKLNLSDFDMENSSIAVLGKGNKWRYIPLPAELNKL 190

Query: 245 LA--------MTPIGKETFFINNDKQKMNA--------TQFSIWFKAKATKAGVNKSAHG 288
           L                 FF++  +++++           F    +     +G + SAH 
Sbjct: 191 LHMYLEERMVPRSTKDNAFFVSQFRRRISKRMVQTIAEKTFEAMTEQFPQLSGQSLSAHK 250

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
           +R   AT     GA    +    G + +   + YT   D  +   +   +I   + 
Sbjct: 251 LRHSFATELLRNGADLRAVQELLGHEDISTTQIYTHVLDETK--ERAMNKIRPAIP 304


>gi|163783234|ref|ZP_02178228.1| Phage integrase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881568|gb|EDP75078.1| Phage integrase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 369

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 56/325 (17%), Positives = 118/325 (36%), Gaps = 27/325 (8%)

Query: 17  RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76
           + G+  Y       +R   P           ++           +  P  +     +   
Sbjct: 8   KKGRRYYVVIPIGHKRKWFPAGTTKREAEKVLAEKLAELNAGSSVLPPEVR---FSFFCE 64

Query: 77  EYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSA 133
           E+      GS+  ++   +E    +  + + GD    +ITT  ++  V  R  + +P++ 
Sbjct: 65  EWLSKYAKGSVKPSTFRRYEGIIRNHFMPRFGDKKLSRITTGMLQGYVAERLSQVSPTTV 124

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
           +Q +  ++ +FK A    Y+  NP  +++RP+R+ + I   T E+++            R
Sbjct: 125 LQEVVLLKEMFKHAQSWGYIKHNPAQNLQRPRREKKEIDILTPEEVEFLLENT--HEHYR 182

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ---------KTGTII-TVELPDGF 241
           +AF   + +GLR  +        +   +    ++           K+   I  V++PD  
Sbjct: 183 VAFLTAVMTGLRAGELWGLKWDDIDWHSKQIYVRRTLWNGEFHTPKSRHSIGKVDMPDVL 242

Query: 242 MKLL-----AMTPIGKETFFINNDKQKMNATQFSIW-FKAKATKAGVN-KSAHGVRKFSA 294
           ++ L        P      F +   +           FK    +AG+   S H +R  +A
Sbjct: 243 VEELKLWEIRCPPNKYNLVFPSPKGEPSEHQNVVNRYFKPALRRAGLRVVSFHSLRHTNA 302

Query: 295 TISADAGATAHELMATYGWKTVDQA 319
           +I   AG     +    G  +++  
Sbjct: 303 SIRIRAGQNIKYIQRQLGHASINTT 327


>gi|149194209|ref|ZP_01871307.1| Phage integrase [Caminibacter mediatlanticus TB-2]
 gi|149136162|gb|EDM24640.1| Phage integrase [Caminibacter mediatlanticus TB-2]
          Length = 268

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 41/247 (16%), Positives = 97/247 (39%), Gaps = 12/247 (4%)

Query: 88  AVNSRISFESYFDQIIRKSG-DFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKW 146
           ++ +  ++E+   + +     + +   IT   +     S+K    +  + ++ +R  F +
Sbjct: 21  SLQTHRTYENVLKEALNFIELESNIIDITPYRLHIANLSKK----TIAKKVSVLRSFFDF 76

Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRC 206
             ++ Y      +  E  K      +P + E++++            LA   +   GLR 
Sbjct: 77  LKQEGYKFK--IVGDEHIKVPKTLPKPISLENIKEALKV--ANMDEYLAIIVIFSLGLRI 132

Query: 207 SDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM--TPIGKETFFINNDKQKM 264
           S++    +  +  +   IK +   T I + L     + +        K+ +    D +K 
Sbjct: 133 SEALNIKLSDIHGDWIEIKGKGNKTRI-LPLHPKLKEFIQKYLKINPKKEYLFEKDGKKY 191

Query: 265 NATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +  Q     +    K G++ + H +R   AT   D GA  +++    G + +   + YTK
Sbjct: 192 SENQLRYNIQKAFKKIGIHATPHQLRHSFATYMLDKGARINDVSELLGHEFISTTQIYTK 251

Query: 325 GADRIRL 331
            ++ ++L
Sbjct: 252 LSNSLKL 258


>gi|240170150|ref|ZP_04748809.1| site-specific tyrosine recombinase XerD [Mycobacterium kansasii
           ATCC 12478]
          Length = 313

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 45/274 (16%), Positives = 84/274 (30%), Gaps = 35/274 (12%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS----GVESRKHTPSS-------- 132
             +A N+  S+     +  +   D     +            V  R+  P S        
Sbjct: 21  RGVAANTLSSYRRDLRRYTKHLEDRGITDLAAVGEDDVSDFLVALRRGDPDSGATALAAV 80

Query: 133 -AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----- 186
            A + L ++R L ++A  +    ++   +V  P       +  T + +            
Sbjct: 81  SAARALIAVRGLHRFAAAEGLAELDVARAVRPPTPGRRLPKSLTVDQVLALLEGAGGDNP 140

Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFM 242
                  + R   E L  +G R S++    V  +  +    +   K G    V +    +
Sbjct: 141 ADGPLTLRNRALLELLYSTGSRISEAVGLDVDDVDTHARSVLLRGKGGKQRLVPVGRPAV 200

Query: 243 KLL-----------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289
             L           A    G    F+N    +++        +  A  AG+    S H +
Sbjct: 201 HALDAYLVRGRPDLARRGRGTAAIFLNARGGRLSRQSAWQVLQDAAECAGITAGVSPHML 260

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           R   AT   + GA    +    G  +V   + YT
Sbjct: 261 RHSFATHLLEGGADVRVVQELLGHASVTTTQIYT 294


>gi|311745481|ref|ZP_07719266.1| tyrosine recombinase XerD [Algoriphagus sp. PR1]
 gi|126578034|gb|EAZ82254.1| tyrosine recombinase XerD [Algoriphagus sp. PR1]
          Length = 294

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 37/286 (12%), Positives = 97/286 (33%), Gaps = 26/286 (9%)

Query: 74  LISEYRKSAHWGSLAVN-----SRISFESYFDQIIRKSGDFDYRKITTKHIRSG---VES 125
           +I  +     +   + +      R   E + + +    G+ D   +    IR+    +  
Sbjct: 1   MIDSFINYLEFEKKSSSHTVLAYRKDLEQFLEFVSVSFGEEDILFVGHSEIRAWVIDLVE 60

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM-----Q 180
            + + ++  + + ++R  +K+ +R   ++ +P   ++  K   +      +  +     +
Sbjct: 61  NQLSTTTVNRKIATLRSYYKFLLRSRVISKDPTYKLKSLKNPKKLPEFLQELTISSVLEE 120

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPD 239
                  EG + ++  EFL  +G+R S+        +  +   +K   K      + L +
Sbjct: 121 SVYEENFEGQRDKMVLEFLYLTGVRLSELTGLKWGDINLSEKVVKVLGKRKKERIIPLTN 180

Query: 240 GFMKLLAMTP----------IGKETFFINNDKQKMNATQFSIWFKAKATK-AGV-NKSAH 287
           G  + +                 + F ++N+ +           +      A    +S H
Sbjct: 181 GLARNIISYQKVFEERFSKVSQSDYFIVSNNGKPSYPMMIYRVVRKYLDIFAQTSKRSPH 240

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
            +R   AT   + GA  + +    G   +   + YT  +      +
Sbjct: 241 VLRHTFATHLLNKGADLNAVKDLLGHSNLAATQVYTHNSLEKLKAV 286


>gi|270308830|ref|YP_003330888.1| site-specific recombinase, phage integrase family [Dehalococcoides
           sp. VS]
 gi|270154722|gb|ACZ62560.1| site-specific recombinase, phage integrase family [Dehalococcoides
           sp. VS]
          Length = 385

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 51/323 (15%), Positives = 102/323 (31%), Gaps = 47/323 (14%)

Query: 49  SALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSG 107
             L     ++   +  +   TT+   +  + ++    + A  +   +       +    G
Sbjct: 44  KELAALINRKNNGSFVKPTKTTVGTFLESWLETYASCNTAPRTFERYSQIVRLHLTPNLG 103

Query: 108 DFDYRKITTKHIRSGVESR---------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158
             +  ++  +HI++                +  +       +      AV+   +A N  
Sbjct: 104 RIELTQLRPEHIQAYYSKALSGGRVSGGGLSAQTVKHHHRVLSEALNHAVKWGLLARNVA 163

Query: 159 LSVERPKRKTEGIRPWTKEDMQQFKSFWSE-----GSQPRLAFEFLLYSGLRCSDSCRAG 213
           ++V+ P+ +   +     EDM       ++     G    L F   L++G+R  +     
Sbjct: 164 MAVDPPRPEKREMHTIAPEDMSVLFEEAAKMEKNSGLPYELIFMTALHTGMRRGEILALR 223

Query: 214 VQHLQ----------------NNIFSIKTQKT-GTIITVELPDGFMKLL----------- 245
              +                 N    I+  KT G+   V +    ++ L           
Sbjct: 224 WSDIDLAKSKIYVRCSLQCLKNGEIIIREPKTPGSRRLVSMTPSLLEKLIIHKESSSANM 283

Query: 246 ---AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGA 302
                T  G    F + D   +N    S  F   A +AG+N   H +R   AT+   AG 
Sbjct: 284 ILQGKTLQGDSLVFAHFDGTPINPNTVSPAFAKIAKRAGLNLRLHDLRHSHATLMLTAGV 343

Query: 303 TAHELMATYGWKTVD-QAETYTK 324
               +    G  TV    +TY+ 
Sbjct: 344 HPKIVSERLGHSTVAFTLDTYSH 366


>gi|329297033|ref|ZP_08254369.1| site-specific tyrosine recombinase XerC [Plautia stali symbiont]
          Length = 303

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 37/259 (14%), Positives = 82/259 (31%), Gaps = 19/259 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRK---ITTKHIRSGVESRKHTPSSAIQF---LT 138
             L+  ++ +++     +I  + D        +    +RS     +     A      ++
Sbjct: 22  RQLSPLTQKNYQRQLQALIAMADDMHITAWSQLEPAQVRSLAARSRRGGLGASSLALRMS 81

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE---GSQPRLA 195
           ++R    W V Q  ++ NP   +  P+      +    +++ Q      +     + R  
Sbjct: 82  ALRSFLDWQVSQGMLSANPAKGIATPRNARHLPKNMDVDEVSQLLDIDLDDPLAVRDRAM 141

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVEL-------PDGFMKLLAM 247
            E +   GLR ++      +HL           K      V +          ++ L   
Sbjct: 142 LETMYGGGLRLAELVGIDCRHLDLESGEVWVRGKGSKERRVPIGGTAVTWLQHWLPLRNS 201

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAH 305
                +  F++    +++A      F     K GV  +   H +R   AT   ++     
Sbjct: 202 FAPQDDAVFVSTRGSRISARNVQKRFAEWGIKQGVASHIHPHKLRHSFATHLLESSGDLR 261

Query: 306 ELMATYGWKTVDQAETYTK 324
            +    G   +   + YT 
Sbjct: 262 AVQELLGHVNLSTTQIYTH 280


>gi|296162695|ref|ZP_06845481.1| integrase family protein [Burkholderia sp. Ch1-1]
 gi|295887083|gb|EFG66915.1| integrase family protein [Burkholderia sp. Ch1-1]
          Length = 339

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 40/260 (15%), Positives = 82/260 (31%), Gaps = 36/260 (13%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLF 144
             L  +   +++ Y     ++ G                  +  T  +    LT +R   
Sbjct: 76  QELTRSVLEAYQRYLYLYRKQDG------------------KPLTIRTQQTMLTPLRGWC 117

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRP-WTKEDMQQFKSFWSEG----SQPRLAFEFL 199
           +W  R+ +V  N    +  P+      +   +   +++       G    ++ R   E L
Sbjct: 118 RWLSRERHVQYNAAAELVLPRAPKLLPKVVLSVVQVERLMDQPDVGGLTGARDRAILEVL 177

Query: 200 LYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLA----------M 247
             +G+R  +     V  +        I+  K      + L +     +            
Sbjct: 178 YSTGMRRMELIGLTVSDIDLSGGTVMIRQGKGRRDRYIPLGERACYWVEWYCDQIRPSLA 237

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA-HGVRKFSATISADAGATAHE 306
               + T F+ +  +     + S   K     AG+ + A H +R   AT   + GA    
Sbjct: 238 VRADEWTLFLTDYGEPFGKGRLSDLVKRYMEMAGIREGACHVLRHACATHMLENGADIRF 297

Query: 307 LMATYGWKTVDQAETYTKGA 326
           + A  G   +   + YT+ A
Sbjct: 298 IQALLGHADLSSTQIYTQVA 317


>gi|227358498|ref|ZP_03842823.1| integrase [Proteus mirabilis ATCC 29906]
 gi|227161209|gb|EEI46283.1| integrase [Proteus mirabilis ATCC 29906]
          Length = 316

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 51/313 (16%), Positives = 101/313 (32%), Gaps = 16/313 (5%)

Query: 17  RHGKIIYYFR-KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP-TTLKWL 74
           R G  IYY+R     +   +          A  + L    PK   ++        TL   
Sbjct: 2   RKG--IYYYRDVRTKKEFSVGSNKSLAITEAIQANLAIYKPKEPLVDRINNVHCVTLHEW 59

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
           +  YR   +   L   +   +ES    I     D     +T + + + +       + A 
Sbjct: 60  LDTYRGKVNSRGLKEKTLYDYESRIKLIKLHFNDCPIENVTPRDVATFISEYPKK-AMAK 118

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
              ++M   F  A+    +  NP    + PK   +  R  + E+ +   +      + R 
Sbjct: 119 LLRSTMLDAFNEAIADGVIKENPVSVTKPPKTSVQRSR-LSLEEFK--YALEHTNDKYRH 175

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254
            F     +  R SD        ++N+   +   KTG+ + + L      +     I    
Sbjct: 176 MFLLAALTAQRISDIINMKWDDIKNDRLYVTQIKTGSKVAIPLSLRLESIGYS--IKDVL 233

Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGVNK-----SAHGVRKFSATISADAGATAHELMA 309
             +N +  K+     +   + K  +A         + H +R   +    +   +A     
Sbjct: 234 NLMNRNSDKICGNTTAKTLRGKFIEALPEYLENKPTFHEIR-SLSARLYEEEKSAEFAKK 292

Query: 310 TYGWKTVDQAETY 322
             G K++   + Y
Sbjct: 293 ILGHKSMRMTDKY 305


>gi|307307477|ref|ZP_07587211.1| integrase family protein [Shewanella baltica BA175]
 gi|306910152|gb|EFN40586.1| integrase family protein [Shewanella baltica BA175]
          Length = 376

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 60/321 (18%), Positives = 108/321 (33%), Gaps = 21/321 (6%)

Query: 23  YYFR---KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYR 79
           YY R   +G  +   +   ++ T   A + A       R  +        TL     E+ 
Sbjct: 43  YYVRFQYQGLRQLHVIGNANDITLDDARLEARKQIDALRYGVVREPAPSLTLCAFAEEFF 102

Query: 80  KSAHWGS-LAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFL 137
               +      ++ ++ +  F   I    GD     +T +HI    +    +   A + L
Sbjct: 103 --PRYARHWKPSTLLNSQRGFTRHIAPVLGDVPLAALTRQHIEQWFDGMHASKGMANRLL 160

Query: 138 TSMRVLFKWAVRQEY--VAINPCLSVERPKRKTEGIRPWTKEDMQ----QFKSFWSEGSQ 191
             + V+ + A   EY     NPC   +R K  T   R  ++E+++       S       
Sbjct: 161 PLLSVMMQQAEVYEYRPAQSNPCKGFKRYK-STHSERYLSEEELKRLWLALDSHEKASPV 219

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251
             +    L+ +G RC++ C       +   + +   KTG   TV L     +LL+  P  
Sbjct: 220 AVMVLRLLILTGCRCNEVCSVKWADYRQGHWYLPDSKTGAK-TVFLSSFARELLSDWPQV 278

Query: 252 KETFF----INNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHEL 307
            E  F     +     +   +F   F+        +   H +R   A+I+         +
Sbjct: 279 SEHLFWHQSPSQPFTPVCLDRFWRPFRQTIHLN--DVRIHDLRHTYASIAVKHNINILTI 336

Query: 308 MATYGWKTVDQAETYTKGADR 328
               G    +    YT  A R
Sbjct: 337 GRLLGHALPETTLKYTHLAKR 357


>gi|84496359|ref|ZP_00995213.1| tyrosine recombinase [Janibacter sp. HTCC2649]
 gi|84383127|gb|EAP99008.1| tyrosine recombinase [Janibacter sp. HTCC2649]
          Length = 299

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 46/269 (17%), Positives = 95/269 (35%), Gaps = 30/269 (11%)

Query: 85  GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHT--------PSSA 133
             L+ N+  ++     +        G  D  K+T +H+   +   +           +SA
Sbjct: 12  RGLSANTLKAYRRDLGRWTAYLSVVGIDDPAKVTERHVSEFLARLREGDEDHPALAANSA 71

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS--- 190
            + L S+R L K+   +  V  +P  +V  P   +   +  +  ++++  +  + G    
Sbjct: 72  ARTLVSVRGLHKFLALEGEVDADPAAAVSPPPPPSRLPKAISVSEVERLLNAAAVGDTPA 131

Query: 191 --QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAM 247
             + +   E L  +G R S++    +  +  +   ++   K G    V L       L  
Sbjct: 132 SLRDKALLELLYGTGARISEAVGLDIDDVDMDAGIVRLEGKGGKQRLVPLGSYARTALTA 191

Query: 248 -----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294
                         G    F+N    +++        +A A +A +  + S H +R   A
Sbjct: 192 YLVRGRGTFSTKGKGTPAIFLNQRGSRLSRQSAWSILRAAAARADLSGHLSPHTLRHSFA 251

Query: 295 TISADAGATAHELMATYGWKTVDQAETYT 323
           T   + GA    +    G  +V   + YT
Sbjct: 252 THLLEGGADVRVVQELLGHASVTTTQVYT 280


>gi|302670606|ref|YP_003830566.1| tyrosine recombinase XerD [Butyrivibrio proteoclasticus B316]
 gi|302395079|gb|ADL33984.1| tyrosine recombinase XerD [Butyrivibrio proteoclasticus B316]
          Length = 292

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 99/278 (35%), Gaps = 26/278 (9%)

Query: 72  KWLISE---YRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVES 125
             LI     Y ++      + N+  S+    +++       G      IT   +   + S
Sbjct: 2   DQLIDAFCLYLETV--KKASANTISSYRRDLNRMASHMSNRGITSIADITDDRLHGYISS 59

Query: 126 RKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
            +      SS I+ ++S+R  F++ +    +  NP  ++  PK      R  T  +++  
Sbjct: 60  MQEEHCAGSSIIRSVSSIRAFFRYLLENGNIQDNPAENIRTPKAARSAPRIMTSYEIEAL 119

Query: 183 KSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ---------KT 229
            S      + G + +   E +  +GLR ++     ++++  ++  I+           K 
Sbjct: 120 LSQTFPNDALGKRDKAILELMYATGLRTTELVELELENIDMSLNCIRLGENRVIPYGKKA 179

Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287
              +   L     ++L+      +  F+N     M+        K    +AG++   + +
Sbjct: 180 KEALNEYLLFARDEILSDNSASLQKVFVNYMGNPMSRQGLWKLIKTYVKRAGIDADITPY 239

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
            +R        ++GA  + +    G   +     Y K 
Sbjct: 240 SLRHSFTMHLIESGADINAVQDMMGLSGLSALSQYRKA 277


>gi|329925024|ref|ZP_08279968.1| phage integrase, N-terminal SAM domain protein [Paenibacillus sp.
           HGF5]
 gi|328940143|gb|EGG36475.1| phage integrase, N-terminal SAM domain protein [Paenibacillus sp.
           HGF5]
          Length = 346

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 48/309 (15%), Positives = 106/309 (34%), Gaps = 42/309 (13%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISF----ESYFDQIIRKSGDFDYRKITTKHIRSGV-- 123
           TL+  +    K     +L   +   +      + + +  + G+   R++T   +R  V  
Sbjct: 25  TLQEAVDFVVKIKRANNLKERTISGYIQNMNYFIEWVTERYGEITIREVTADLLREYVLW 84

Query: 124 -------------------ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP 164
                                   +P+S    +  ++  F     +E +  NP  +V   
Sbjct: 85  CATDKEYYAGHPFKAEYEKGKLGLSPASVNVRIRVLKTFFAVLFEEEVIDRNPAANVSLM 144

Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-- 218
           ++  + + P + E++++F     +      +  +    +L +GLR  + C      +   
Sbjct: 145 RQDVDTVMPLSDEELRRFMKAPDQRQWAQWRDYVIMTLILDTGLRLGEICALEKPEIDFV 204

Query: 219 NNIFSIKTQKTGTIITVELP------DGFMKLLAMTPIGKET--FFINNDKQKMNATQFS 270
               ++   K     +  LP          +L+A T    +T   F  N  ++++     
Sbjct: 205 KKSITLPASKNKNRKSRTLPLSTETARLLKQLIAETERNFDTTYVFTTNYGEQLSEKTIQ 264

Query: 271 IWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
             F   A +A + +  S H +R   AT++A+ G +   L    G   +     Y      
Sbjct: 265 KSFDNYAERAKLGRTVSPHVLRHNFATMAAENGMSIFHLQKLMGHADIATTRKYV-QISE 323

Query: 329 IRLGIKNSR 337
             L  ++ R
Sbjct: 324 GSLAEEHKR 332


>gi|328955478|ref|YP_004372811.1| integrase family protein [Coriobacterium glomerans PW2]
 gi|328455802|gb|AEB06996.1| integrase family protein [Coriobacterium glomerans PW2]
          Length = 304

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 42/265 (15%), Positives = 88/265 (33%), Gaps = 28/265 (10%)

Query: 88  AVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRV 142
           +  +  ++E +                       +   + +   + +P +    L+++R 
Sbjct: 21  SPETARAYEGHLRAYLSWQRRAHLDGLVLEVPVVRSYLADLYDARRSPRTIAAHLSAIRS 80

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLAFEF 198
           L +W + +     +   +++ P+  T   R  T++ M+Q  +        GS+     E 
Sbjct: 81  LSRWLLLEGITKTDAVATMQTPRIPTGLPRTLTQQQMEQLLALPDTASPTGSRDAAILEL 140

Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVEL----------------PDGF 241
           L  SG R S+     +  L      ++   K      V L                P   
Sbjct: 141 LYASGARISEIAALDIASLDAEQRCVRLLGKGSKERIVPLYRRALRRLVSYLDEGRPLLI 200

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
                 +   +   F++   ++M+A      F+A A  AG+    + H +R   AT    
Sbjct: 201 RSRTLASDSDRTALFLSRRGRRMSADSLRCRFRAYARIAGLPADITPHAMRHTFATDLLA 260

Query: 300 AGATAHELMATYGWKTVDQAETYTK 324
            GA    +    G  ++   + YT 
Sbjct: 261 GGADMRSVQELLGHASLATTQLYTH 285


>gi|124265741|ref|YP_001019745.1| hypothetical protein Mpe_A0548 [Methylibium petroleiphilum PM1]
 gi|124258516|gb|ABM93510.1| conserved hypothetical protein [Methylibium petroleiphilum PM1]
          Length = 334

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 52/313 (16%), Positives = 96/313 (30%), Gaps = 44/313 (14%)

Query: 52  TGSTPKREYINSPRKKPT------TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK 105
             +     +   P   P        L+ LI  Y  +      +  ++       D  + K
Sbjct: 12  ATTPASVPHTGVPPPAPGVRDGSIALRHLIDAYMAAYAGRDTS-RTQR-----LDWWVAK 65

Query: 106 SGDFDYRKITTKHIRSGVE------------------------SRKHTPSSAIQFLTSMR 141
            G      +T  H+ + +E                         R   P++  ++  ++ 
Sbjct: 66  LGGVSLADLTDDHVFTALEQLATQRGRYFAGKDADGKPVMKAKRRPLAPATLNRYQAALS 125

Query: 142 VLFKWAVRQEYVAIN---PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEF 198
            +  WA R+     N   PC  VE    K E +R  +  +     +   + S PRL    
Sbjct: 126 AVLTWAQRRRIAPKNWQNPCRHVELKAEKNEIVRFLSDAERTALLAACRKSSWPRLYLLV 185

Query: 199 LLY--SGLRCSDSCRAGVQHLQNNIFS--IKTQKTGTIITVELPDGFMKLLAMTPIGKET 254
           ++   +G R  +        +        +   K G    + L    +  LA        
Sbjct: 186 MMGLTTGARRGELEALRWADVDLERAEAAVHRSKNGDKKVLPLVPAVVDELAKHAGAANA 245

Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGW 313
               + ++   A  F   +      AGV     H +R   A+  A  GAT  E+    G 
Sbjct: 246 LVFPSTRRPDIAYNFDPAWDRALKAAGVKSFRFHDLRHSCASALAQNGATLLEIAEVLGH 305

Query: 314 KTVDQAETYTKGA 326
           + +   + Y+  A
Sbjct: 306 RQLSVTKRYSHLA 318


>gi|153933244|ref|YP_001385294.1| phage integrase family site specific recombinase [Clostridium
           botulinum A str. ATCC 19397]
 gi|152929288|gb|ABS34788.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum A str. ATCC 19397]
          Length = 387

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 64/392 (16%), Positives = 127/392 (32%), Gaps = 75/392 (19%)

Query: 16  TRHGKIIYYF-----RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK---- 66
           T++GK  Y       R  +G+ IR        F   Y ++   +  KR+   +  K    
Sbjct: 8   TKNGKQYYRVTASIGRDANGKLIR------KEF---YGASKKEAENKRDEYLNGIKNGLN 58

Query: 67  ---KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF-----DYRKITTKH 118
              K   L  L+  +        +  +S   +E  +   I+ S  F     D + I  + 
Sbjct: 59  IDYKNIILGELMHTWLFEIMRVKVKPSSFERYEGIYRNYIKNSQLFGLKLADLKTIQVQR 118

Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE-----GIRP 173
             + + +   T +        +R  F +AV + Y+  NPC   +      +      I  
Sbjct: 119 YYNELYNNGKTSNVIKNLNKLLRTFFNYAVNEGYILKNPCSGSKIIIPGGKDMEVKEIEI 178

Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233
           +T ++++  K    EG++ +      L SGLR  +        +      IK  K+   +
Sbjct: 179 FTDKEIKALKKQL-EGNRLKCLILLALGSGLRQGELLALRWDDIDFKTNEIKVTKSIKRV 237

Query: 234 -------------------------TVELPDGFMKLLA--------------MTPIGKET 254
                                     V +P   +  L                + + K  
Sbjct: 238 KIIENDGTGKRKTIEQSPKSIKSNRVVPIPSKLINALEEHKALQEKEIKEAGCSYVDKNL 297

Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGW 313
            F     + +        ++    +A + +K  H +R   AT   +       +    G 
Sbjct: 298 VFATKLGKPIVVKNLFESYRRILIRAKIPHKKFHALRHTYATKLFEKDVQLKTVQKLLGH 357

Query: 314 KTVD-QAETYTKGADRIRLGIKNSRRISSVVD 344
           K +   A+TYT    + +  I  + +++ + D
Sbjct: 358 KNISITADTYTHVMPKEK--ISAADKLNDLFD 387


>gi|328907661|gb|EGG27425.1| site-specific tyrosine recombinase XerC [Propionibacterium sp. P08]
          Length = 310

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 41/284 (14%), Positives = 91/284 (32%), Gaps = 27/284 (9%)

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVE 124
           P +L   + ++         + N+   + +            GD    KI T  +R+ + 
Sbjct: 10  PASLTVPVEDFCDHLSALRRSPNTIRGYRADLIDFMGHAHSHGDDALGKIGTSQVRAWLA 69

Query: 125 SRK---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
             +    +P++  +  ++ RV F+WA  +  +  +P  ++               +  + 
Sbjct: 70  DTRLAGASPATMQRRWSAARVFFRWAANEGLIDCDPTAALTSANVPKRLPATLGVDQARH 129

Query: 182 FKSFW---------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGT 231
                          +G++     E L   GLR  + C   +  +  +  + I T K   
Sbjct: 130 ILDGAVAQARSDETPQGARDAAILEVLYGGGLRVGELCGLDLGDVDRSRQTVIVTGKGDK 189

Query: 232 IITVELPDGFMKLLA---------MTPIGKETFFINNDKQKMNATQFSIWFKAKATK--A 280
             TV +    +  +            P   +  F+     +++         A       
Sbjct: 190 ERTVPMGTPALHAIDTWLPRRAEWAGPDSGQALFLGARGGRIDQRVVRRVVHAHMRSEPD 249

Query: 281 GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             +   HG+R   AT   + GA    +    G +++   + YT 
Sbjct: 250 SPDLGPHGLRHAMATHLLEGGADLRTVQDILGHESLATTQIYTH 293


>gi|167627355|ref|YP_001677855.1| phage integrase family protein [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|167597356|gb|ABZ87354.1| phage integrase family protein [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 293

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 39/264 (14%), Positives = 90/264 (34%), Gaps = 18/264 (6%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI---RSGVESRKHTPSSAIQFLTSMR 141
            + +  +  ++     Q+     D D  K+    I      + ++ ++  +  + L+S+R
Sbjct: 18  KNYSQETINNYRRDLLQLNSSIVDKDITKLENNDILMWVKKLHAQGNSSKTLQRKLSSLR 77

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG---SQPRLAFEF 198
             F + +  E +  NP   ++ PK   +  +    +++             ++    F+ 
Sbjct: 78  SFFNFLINSELIKNNPTTGIKAPKSSKKLPKAVNTDELAYLLDIKPSNNIETRDIACFDL 137

Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT---------GTIITVELPDGFMKLLAMTP 249
           L   G+R S+     ++ +  N  SI+             G+   + L          +P
Sbjct: 138 LYSCGIRLSELSSIELKDININQKSIRVIGKGNKERVVYFGSKTLINLNRWLNTRDTYSP 197

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATK-AGVNKSAHGVRKFSATISADAGATAHELM 308
                 FI+ + + +         +  A K A  +   H +R   AT   D+      + 
Sbjct: 198 -KCNFLFISQNGEHLTNRSIQKRIEIFAQKYATKHIHPHMLRHSFATHVLDSSKDLLAVK 256

Query: 309 ATYGWKTVDQAETYTKGADRIRLG 332
              G   +   + YT   +  +L 
Sbjct: 257 DLLGHADISSTQIYTH-LNFQQLA 279


>gi|212715594|ref|ZP_03323722.1| hypothetical protein BIFCAT_00493 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660961|gb|EEB21536.1| hypothetical protein BIFCAT_00493 [Bifidobacterium catenulatum DSM
           16992]
          Length = 308

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 47/274 (17%), Positives = 91/274 (33%), Gaps = 34/274 (12%)

Query: 85  GSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGVE--SRKHTPSSAIQFLTS 139
             L+ N+R ++    ++    + + G  +  ++T + +R  +   S+KH  SS  +   +
Sbjct: 18  RGLSENTRKAYRGDVEECLLALERLGCRNLNEVTIEDLRMWMAESSKKHAKSSMARKTVA 77

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS--------- 190
           +R  F W         +P   +  PK         ++   +Q      E S         
Sbjct: 78  VRGFFAWTHEHGVTTTDPACVLMTPKIPDTLPDVLSESQAEQLMERVDEDSETSQPKERT 137

Query: 191 --------QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGF 241
                   +     E L  +G+R ++     V  +  +N     T K      +      
Sbjct: 138 MKQQAIELRDAAMLELLYATGMRVAELVGLDVPDVVFSNRTVKVTGKGNKQRVMPFGAPA 197

Query: 242 MKLLAMTPIGKE----------TFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVR 290
            K +                    F+    ++++         A A  AGV + S H +R
Sbjct: 198 QKAIRRWLDDGRPLLVGEQSAAALFLGRQGKRIDQRMVRRVVHACARDAGVPDISPHALR 257

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             +AT   D GA   E+    G  ++   + YT 
Sbjct: 258 HSAATHMLDGGADLREVQELLGHSSLKTTQRYTH 291


>gi|261406744|ref|YP_003242985.1| integrase family protein [Paenibacillus sp. Y412MC10]
 gi|261283207|gb|ACX65178.1| integrase family protein [Paenibacillus sp. Y412MC10]
          Length = 311

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 46/296 (15%), Positives = 104/296 (35%), Gaps = 32/296 (10%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           L   Y K   +   A +++ ++       +         ++T   +   +   + + + A
Sbjct: 16  LFLSYMKDREY---AKDTQQAYLHDIKHFLNSLEGKPITEVTDIDVMYYLTQVRESGAGA 72

Query: 134 ---IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE-----GIRPWTKEDMQQFKSF 185
               +  +++R+ +K  +R +  + NP + +E+ K +         +P     +   +  
Sbjct: 73  RYRNRCQSAIRLFYKVMIRFKLASTNPAMDIEKAKVEKNRQPTYLQKPILDACLNGIEGR 132

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGFMKL 244
           +    +       + Y+GLR S+  +  V  +     SI    K      + LP    KL
Sbjct: 133 YRI--RDVTIIALMAYAGLRVSEIVKLNVTDVDMENSSIGVLGKGSKWRYIPLPAELNKL 190

Query: 245 L--------AMTPIGKETFFINNDKQKMNA--------TQFSIWFKAKATKAGVNKSAHG 288
           L        A        FF++  +++++           F+   +     +G + SAH 
Sbjct: 191 LQMYLEERMAPRSSKDNAFFVSQFRRRISKRMVQTIAEKTFAAMTEQFPQLSGQSLSAHK 250

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
           +R   AT     GA    +    G + +   + YT   D  +   +   +I   + 
Sbjct: 251 LRHSFATELLRNGADLRAVQELLGHEDISTTQIYTHVLDETK--ERAMNKIRPAIP 304


>gi|217975611|ref|YP_002360281.1| integrase family protein [Shewanella baltica OS223]
 gi|217500806|gb|ACK48858.1| integrase family protein [Shewanella baltica OS223]
          Length = 376

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 60/321 (18%), Positives = 108/321 (33%), Gaps = 21/321 (6%)

Query: 23  YYFR---KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYR 79
           YY R   +G  +   +   ++ T   A + A       R  +        TL     E+ 
Sbjct: 43  YYVRFQYQGLRQLHVIGNANDITLDDARLEARKHIDALRYGVVREPAPSLTLCAFAEEFF 102

Query: 80  KSAHWGS-LAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFL 137
               +      ++ ++ +  F   I    GD     +T +HI    +    +   A + L
Sbjct: 103 --PRYARHWKPSTLLNSQRGFTRHIAPVLGDVPLAALTRQHIEQWFDGMHASKGMANRLL 160

Query: 138 TSMRVLFKWAVRQEY--VAINPCLSVERPKRKTEGIRPWTKEDMQ----QFKSFWSEGSQ 191
             + V+ + A   EY     NPC   +R K  T   R  ++E+++       S       
Sbjct: 161 PLLSVMMQQAEVYEYRPAQSNPCKGFKRYK-STHSERYLSEEELKRLWLALDSHEKASPV 219

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251
             +    L+ +G RC++ C       +   + +   KTG   TV L     +LL+  P  
Sbjct: 220 AVMVLRLLILTGCRCNEVCSVKWADYRQGHWYLPDSKTGAK-TVFLSSFARELLSDWPQV 278

Query: 252 KETFF----INNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHEL 307
            E  F     +     +   +F   F+        +   H +R   A+I+         +
Sbjct: 279 SEHLFWHQSPSQPFTPVCLDRFWRPFRETIHLN--DVRIHDLRHTYASIAVKHNINILTI 336

Query: 308 MATYGWKTVDQAETYTKGADR 328
               G    +    YT  A R
Sbjct: 337 GRLLGHALPETTLKYTHLAKR 357


>gi|85372970|ref|YP_457032.1| site-specific recombinase, phage integrase family protein
           [Erythrobacter litoralis HTCC2594]
 gi|84786053|gb|ABC62235.1| site-specific recombinase, phage integrase family protein
           [Erythrobacter litoralis HTCC2594]
          Length = 330

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 51/273 (18%), Positives = 103/273 (37%), Gaps = 15/273 (5%)

Query: 81  SAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
           S HW     ++R +  +Y D ++I + G      I    I    +S      +  + +  
Sbjct: 59  SPHWK---PSTRDASRAYIDKRLIPRFGALSVDAIERADINRWRDSMADVGGAFNRSIPV 115

Query: 140 MRVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL--- 194
           + V+ ++A +  Y     NPC  V R KR     R  + ++ ++     +E +       
Sbjct: 116 LSVMMQYAEKLGYREKNTNPCRGVSRFKRDLPE-RYLSADEYRRLGKVLAEHNGANAFVV 174

Query: 195 -AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI-GK 252
            A   L+Y+G R S+      ++++    ++   KTG   T+ L    + +L      G 
Sbjct: 175 PALLLLIYTGARVSEIATLRWRYVELPRLALPDSKTG-PKTIYLNPQAIAVLDGLQRRGD 233

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYG 312
           +        +++       W K +   A  +   H +R   A+++   G     +    G
Sbjct: 234 DQLVFPAMYREVPINLGQHWEKIRRKAALPDVRLHDLRHSFASVAIAKGIPLATIGKLLG 293

Query: 313 WKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345
               +    Y   AD   +  +++ RI S + S
Sbjct: 294 HALPETTARYAHLAD--EVISESADRICSSLAS 324


>gi|315282101|ref|ZP_07870587.1| tyrosine recombinase XerC [Listeria marthii FSL S4-120]
 gi|313614253|gb|EFR87911.1| tyrosine recombinase XerC [Listeria marthii FSL S4-120]
          Length = 300

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 43/283 (15%), Positives = 100/283 (35%), Gaps = 27/283 (9%)

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD---FDYRKITTKHIRSGV 123
           +   L+    +Y  S    + +VN+  ++E+      R   +     Y+++T   +R  +
Sbjct: 3   QEGKLEQQFLDYLHSER--NYSVNTSTAYENDLLDFRRFLNEQAIMAYQQVTFLDVRIYL 60

Query: 124 ESRKHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
              K      ++  + ++S+R  + + +R+  +  NP   V   K +    + +  E+M+
Sbjct: 61  TELKQKSFSRTTVARKISSLRSFYTFLLRENVITENPFTYVSHAKNQLRLPKFFYSEEME 120

Query: 181 Q-----FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIIT 234
                 ++   +   + R+  E L  +G+R S+     +  L  +  +I    K      
Sbjct: 121 ALFQVVYEDNETLTLRDRVLLEVLYGTGIRVSECAGILMPDLDTSYQAILIRGKGNKERY 180

Query: 235 VEL-----------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
           V                  +L+       +   +N+    +             +KA + 
Sbjct: 181 VPFGVYAEDAITDYLPSRTELMTRYKKSHDALLVNHYGDPLTTRGIRYCLTKIISKASLT 240

Query: 284 KS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +    H +R   AT   + GA    +    G  ++   + YT 
Sbjct: 241 RKIHPHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTH 283


>gi|198275042|ref|ZP_03207574.1| hypothetical protein BACPLE_01201 [Bacteroides plebeius DSM 17135]
 gi|198272489|gb|EDY96758.1| hypothetical protein BACPLE_01201 [Bacteroides plebeius DSM 17135]
          Length = 372

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 53/318 (16%), Positives = 98/318 (30%), Gaps = 30/318 (9%)

Query: 28  GHGRRIRLPYPHESTFIPAY-------MSALTGSTPKREYINSPRKKPTTLKWLISEYRK 80
           G    +       + F   Y        SA+  + P++E    P             Y +
Sbjct: 47  GGRAYLPAEDFVLAEFFDRYVKMAFIDYSAIKETAPRKEEDKRPPLPEG--------YLE 98

Query: 81  SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG----VESRKHTPSSAIQF 136
                  + ++   + SYF    +         +T   I       +  +  +     Q 
Sbjct: 99  KLQQVRYSDHTVRVYTSYFRDFQQHFEGRKIETVTPGEINDYLLYLIHEKNISSCQQNQR 158

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196
           + +++  ++  + QE      C  V R KR+       +KE++++         +    F
Sbjct: 159 INAIKFYYEKVLGQERR----CYKVNRAKREKTLPDVLSKEEIKKILDATVTDLRFFCMF 214

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLL---AMTPIG 251
             L  +GLR S+        +  +     ++  K        L    MK L         
Sbjct: 215 SILYSAGLRISELLELKPGDINESRSLIRVRQGKGKKDRYTLLSKPLMKKLTEYNRLYKP 274

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMA 309
           K   F +   +    +  S   KA A +AG+ K    H +R   A    + G     +  
Sbjct: 275 KVWLFEHRPGEPFTESIVSKRLKAAAREAGITKRIYPHLLRHSFAPHLLEQGTDIKIVKE 334

Query: 310 TYGWKTVDQAETYTKGAD 327
             G   +   E Y   AD
Sbjct: 335 LMGHNNIKTTERYVHIAD 352


>gi|313623983|gb|EFR94082.1| tyrosine recombinase XerC [Listeria innocua FSL J1-023]
          Length = 300

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 38/273 (13%), Positives = 97/273 (35%), Gaps = 27/273 (9%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK------ITTKHIRSGVESRKHTP 130
           +Y  S    + + ++  ++E+      R   +    +      +  +   + ++ +  + 
Sbjct: 13  DYLHSER--NYSEHTSTAYENDLSDFRRFLNEQAITEYQQVTFLDVRIYLTELKQKSFSR 70

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-----FKSF 185
           ++  + ++S+R  + + +R+  +  NP   V   K +    + +  E+M+      ++  
Sbjct: 71  TTVARKISSLRSFYTFLLRENVITENPFTYVSHAKNQLRLPKFFYSEEMEALFQVVYEDN 130

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVEL------- 237
            +   + R+  E L  +G+R S+     +  L  +  +I    K      V         
Sbjct: 131 ETLTLRDRVILEVLYGTGIRVSECAGIMLSDLDTSYQAILIRGKGNKERYVPFGAYAEDA 190

Query: 238 ----PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRK 291
                 G  +L+       ++  IN+    +             +KA + +    H +R 
Sbjct: 191 ITDYLSGRTELMTRFKKTHDSLLINHYGDPLTTRGIRYCLTKIISKASLTRKIHPHMLRH 250

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK 324
             AT   + GA    +    G  ++   + YT 
Sbjct: 251 TFATDLLNNGADMRTVQELLGHASLSSTQIYTH 283


>gi|107024018|ref|YP_622345.1| site-specific tyrosine recombinase XerC [Burkholderia cenocepacia
           AU 1054]
 gi|116691105|ref|YP_836728.1| site-specific tyrosine recombinase XerC [Burkholderia cenocepacia
           HI2424]
 gi|105894207|gb|ABF77372.1| Tyrosine recombinase XerC [Burkholderia cenocepacia AU 1054]
 gi|116649194|gb|ABK09835.1| tyrosine recombinase XerC [Burkholderia cenocepacia HI2424]
          Length = 306

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 43/279 (15%), Positives = 88/279 (31%), Gaps = 30/279 (10%)

Query: 75  ISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV---ESRKHTP 130
           I+ Y  +  H   L+ ++  ++    D++ + +       +T   +R  V    +   + 
Sbjct: 6   IAAYLSNLKHVRQLSEHTLRAYTHELDELKKLAAGRPLEALTAADMRGAVVRGHAAGLSA 65

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
            S    L++ R  ++W  ++  +  NP   V  PKR+    +  + +D          G+
Sbjct: 66  RSISHRLSAWRAFYRWFAQRVEMPANPVAGVRAPKREKSLPKALSVDDAVALMDAPLAGT 125

Query: 191 ----QPRLAFEFLLYSGLRCSDSCRA-------------GVQHLQNNIFSIKTQKT---- 229
               +     E    SGLR ++                 G   L     +++ +      
Sbjct: 126 TESIRDHAILELFYSSGLRLAELVGLDVRYTQADGYRSAGWLDLAEAEVTVRGKGNKERK 185

Query: 230 ---GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284
              G+     L                  F++    +M+        K  A  AG+    
Sbjct: 186 VPVGSKAIDALNAWLAVRDEFVKHDPHPLFVSVRGNRMSPGVVRERVKRAALAAGIPANV 245

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
             H +R   AT    +      +    G  +V   + YT
Sbjct: 246 HPHVLRHSFATHVLQSSGDLRAVQELLGHASVAATQIYT 284


>gi|282878705|ref|ZP_06287473.1| phage integrase domain protein [Prevotella buccalis ATCC 35310]
 gi|281299096|gb|EFA91497.1| phage integrase domain protein [Prevotella buccalis ATCC 35310]
          Length = 292

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 48/277 (17%), Positives = 106/277 (38%), Gaps = 28/277 (10%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFE---SYFDQIIRKSGD-FDYRKITTKHIRSGVESRKH 128
           +I E+     +  + +  +  S+      F++  +  GD   +  + +  IR  +E    
Sbjct: 1   MIEEFLNYLRFEKNRSTLTAKSYGDDLRAFERYFQGLGDQITWESVDSDIIRGWMEDMMD 60

Query: 129 TPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
             +SA    + L+++R L+++++ +  V +NP L +ERPK      +   + +M +    
Sbjct: 61  RGNSATSICRRLSALRSLYRYSLSRGLVQVNPTLRIERPKMGKPLPQFLKESEMDELLDA 120

Query: 186 --WS---EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK---TQKTGTIITVEL 237
             W    + +  R        +G+R ++    G+  +  +  + +     K      V  
Sbjct: 121 STWDTSYQDALARTIIITFYETGMRLAELI--GLDDVSVDFVNRQFKVLGKRNKQRLVPF 178

Query: 238 PDGFMKLLA--------MTPIGKETFFINNDKQKMNATQFSIWFKA--KATKAGVNKSAH 287
            D   ++L               + FF++ +  +MN  Q     K           ++ H
Sbjct: 179 GDELYQVLQEYLNQRNEQIVRKSKAFFLSRNGVRMNHNQVRYLVKKNLSLVSTLKKRTPH 238

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            +R   AT   + GA    +    G ++++  E YT 
Sbjct: 239 VLRHTFATTMLNNGAGLENVQKLLGHESLETTEIYTH 275


>gi|225076001|ref|ZP_03719200.1| hypothetical protein NEIFLAOT_01028 [Neisseria flavescens
           NRL30031/H210]
 gi|224952716|gb|EEG33925.1| hypothetical protein NEIFLAOT_01028 [Neisseria flavescens
           NRL30031/H210]
          Length = 316

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 46/268 (17%), Positives = 94/268 (35%), Gaps = 19/268 (7%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH----IRSGVESRKHTP 130
           +  Y K+      + ++  ++     +++R   D     + T+     +   +  +  + 
Sbjct: 29  LERYLKTLLQQGKSEHTVSAYWRDLSELMRLLPDNLENGLPTRRDFVAVLKKLSQKGLSE 88

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           SS  + L+  R    W V+ E +  +P  +++ P+      +   +E +           
Sbjct: 89  SSLARKLSVWRQYCSWLVQIEVMESDPTFNMKAPRLPERLPKALPQEPLNHILDHAPVDD 148

Query: 191 ----QPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVEL----PDG 240
               + +  FE +  SGLR S+     +  +       S+K  K G    V L       
Sbjct: 149 ELDVRDKAMFELMYGSGLRLSEIQGLNLDGIVLDEGWVSVK-GKGGKQRQVPLVAKSIAA 207

Query: 241 FMKLL--AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATI 296
               L   +   G++  F N +  ++   Q     +A A + G   + S H +R   AT 
Sbjct: 208 LRDYLAVRIAKEGEQALFTNKNGGRLGQRQIQKRLQAWAVRVGSASHISPHMMRHSYATH 267

Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324
              A      +    G   +   + YTK
Sbjct: 268 LLQASGDIRAVQELLGHSNLSATQVYTK 295


>gi|317121982|ref|YP_004101985.1| tyrosine recombinase XerD [Thermaerobacter marianensis DSM 12885]
 gi|315591962|gb|ADU51258.1| tyrosine recombinase XerD subunit [Thermaerobacter marianensis DSM
           12885]
          Length = 401

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 43/282 (15%), Positives = 94/282 (33%), Gaps = 25/282 (8%)

Query: 68  PTT--LKWLISEYRKSAH-WGSLAVNSRISFESYFDQII-----RKSGDFDYRKITTKHI 119
           P T      ++EY +       LA  +  ++             R+ G     +      
Sbjct: 12  PGTGPWAAALAEYLEILRVERGLAARTLEAYRRDLADFAAFAAGRERGPEAVTRSLVMAY 71

Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
              +       ++  + L ++R  F++ V +  ++ +P   +  P+      R  +  ++
Sbjct: 72  LHHLRQAGRAHTTVARRLAALRGFFRYLVEEGRLSQDPVEGMTAPRAGRPLPRVMSVAEV 131

Query: 180 QQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIIT 234
           ++           G + R   E L  +GLR S+     +  L  +   ++   K G    
Sbjct: 132 ERMLEVPQPPSPAGLRDRAVLELLYATGLRVSELVGLDLDDLLLDHGLLRCRGKGGKERV 191

Query: 235 VELPDGFMKLLA----------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284
           V +    ++                  +   F+N+   +++        +  A +AGV++
Sbjct: 192 VPVAPPAVEATRIYLERGRPHLCRRPSQRALFLNHRGGRLSRQWVWHLLRRAARRAGVSR 251

Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             S H +R   AT     GA    +    G   +   + YT 
Sbjct: 252 AVSPHTIRHSFATHLLAGGADLRAVQELLGHADISTTQIYTH 293


>gi|314938036|ref|ZP_07845346.1| tyrosine recombinase XerC [Enterococcus faecium TX0133a04]
 gi|314941978|ref|ZP_07848839.1| tyrosine recombinase XerC [Enterococcus faecium TX0133C]
 gi|314948769|ref|ZP_07852141.1| tyrosine recombinase XerC [Enterococcus faecium TX0082]
 gi|314951787|ref|ZP_07854826.1| tyrosine recombinase XerC [Enterococcus faecium TX0133A]
 gi|314991806|ref|ZP_07857264.1| tyrosine recombinase XerC [Enterococcus faecium TX0133B]
 gi|314995847|ref|ZP_07860934.1| tyrosine recombinase XerC [Enterococcus faecium TX0133a01]
 gi|313589951|gb|EFR68796.1| tyrosine recombinase XerC [Enterococcus faecium TX0133a01]
 gi|313593617|gb|EFR72462.1| tyrosine recombinase XerC [Enterococcus faecium TX0133B]
 gi|313596066|gb|EFR74911.1| tyrosine recombinase XerC [Enterococcus faecium TX0133A]
 gi|313599230|gb|EFR78075.1| tyrosine recombinase XerC [Enterococcus faecium TX0133C]
 gi|313642611|gb|EFS07191.1| tyrosine recombinase XerC [Enterococcus faecium TX0133a04]
 gi|313644835|gb|EFS09415.1| tyrosine recombinase XerC [Enterococcus faecium TX0082]
          Length = 314

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 47/281 (16%), Positives = 98/281 (34%), Gaps = 34/281 (12%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFE---SYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127
           L++LI E          +  ++ ++E    +F   + +SGD D  K     +R  + +  
Sbjct: 24  LRYLIVE-------RGYSEKTKEAYEEDILHFKHFLEESGDADLLKAEYFTVRVYLSALA 76

Query: 128 H-----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
                 + +S  + + S+R  +++ +++E +  NP   V   K+     R + + +MQ  
Sbjct: 77  DHRPSYSRNSISRKIASLRSFYQYLLKEEVIKENPFSYVHLKKKNLRLPRFFYENEMQAL 136

Query: 183 KSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVEL 237
                       + R   E L  SG+R S+     V  +  ++   +   K        L
Sbjct: 137 FDSVAGDSPLDLRNRALLEVLYGSGIRLSECSSLSVSDIDFDSEVMLIHGKGNKERYAPL 196

Query: 238 ------------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS 285
                        +G   L+       +  F+N+  + +  T           K+ ++  
Sbjct: 197 GSFAQDALQEYFREGRQVLMTKYHEEHDIVFVNHHGKPITPTGIEYVLNQMIKKSSLDSD 256

Query: 286 --AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              H +R   AT   + GA    +    G   +   + Y  
Sbjct: 257 IHPHMLRHTFATHLLNNGADLRTVQELLGHANLSTTQIYAH 297


>gi|313206990|ref|YP_004046167.1| integrase family protein [Riemerella anatipestifer DSM 15868]
 gi|312446306|gb|ADQ82661.1| integrase family protein [Riemerella anatipestifer DSM 15868]
          Length = 291

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 45/260 (17%), Positives = 96/260 (36%), Gaps = 22/260 (8%)

Query: 85  GSLAVNSRISFESYF----DQIIRKSGDFDYRKITTKHIRS---GVESRKHTPSSAIQFL 137
              ++N+  S+        D +    G      +  K IR+    +     +  +  + L
Sbjct: 13  KRYSLNTLASYSRDLQDFSDFVKETEGVDTLISVDKKVIRNFVVYLSENNLSKRTINRKL 72

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ--QFKSFWSEGSQPRLA 195
           +++R  + + V+   ++ +P  +V   K   E   P+++++M+  Q      +    +L 
Sbjct: 73  SALRSFYIYLVKLGIISASPMETVSSLKFYGEKQIPFSQKEMENLQNLLNEEKLLLNKLI 132

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDG--------FMKLL 245
            E L  +G+R S+ CR  ++ +    N   +   K   +  + + +           K  
Sbjct: 133 IELLYQTGMRKSELCRLALKDVDFIQNRIRV-VGKGNKMREIPISENIKRELKLYLEKER 191

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSAHGVRKFSATISADAGAT 303
             T    + FF+    QK+              A  +   KS H +R   AT   + GA 
Sbjct: 192 KPTKENLDYFFVRESGQKLTGKFVYSVVNDYLSAVTSKKKKSPHVLRHSFATHVLENGAE 251

Query: 304 AHELMATYGWKTVDQAETYT 323
             ++    G  ++   + YT
Sbjct: 252 IAQVKEILGHASLASTQVYT 271


>gi|293192780|ref|ZP_06609675.1| tyrosine recombinase XerD [Actinomyces odontolyticus F0309]
 gi|292820027|gb|EFF79025.1| tyrosine recombinase XerD [Actinomyces odontolyticus F0309]
          Length = 315

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 43/289 (14%), Positives = 97/289 (33%), Gaps = 33/289 (11%)

Query: 69  TTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGVE 124
           T+L+ L+ ++          + ++  ++     +     +  G  +   I+ + I     
Sbjct: 2   TSLEALVRDWVDYLRVEKGASAHTVSNYRRDVARYAFDMKSRGKVNVEDISPRDIEDYTM 61

Query: 125 SRKHTP--------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
                         SS  +   ++R L K+A+ +  V  +    +  P++     +  + 
Sbjct: 62  RLASGQVTGTPAAASSVARASAAIRGLHKYALTEGAVGTDAAAQLHAPRQGRHLPKALSV 121

Query: 177 EDMQQFKSFW-----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKT-QK 228
           +++ +            G +     E L  +G R S++       L    ++  ++   K
Sbjct: 122 DEVGRLLDAAHADDSPIGLRDAALLELLYATGARVSEAVSLSADDLDLDGDVPVVRLFGK 181

Query: 229 TGTIITVELPD-----------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKA 277
                 V +                  LA    G   FF+N+    ++        +  A
Sbjct: 182 GRKERVVPVGSFAVDALYAYRVRARPALAARGRGSTAFFLNSRGGALSRQSAWTAIRRAA 241

Query: 278 TKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             A + +  S H +R   AT   + GA+  E+    G  +V   + YT+
Sbjct: 242 EAAQLGERVSPHTLRHSFATHLLEGGASVREVQELLGHASVATTQIYTQ 290


>gi|293368859|ref|ZP_06615463.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|292636164|gb|EFF54652.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
          Length = 397

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 59/293 (20%), Positives = 105/293 (35%), Gaps = 33/293 (11%)

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-FDYRKITTKHIRSGV 123
           + K   + +L++   +S   GSL  N   +  +   ++    GD   +R I    + + V
Sbjct: 99  KSKANVIDYLVNMRNQSKERGSL--NYEKTIGNTIRELKLFRGDYIAFRDIDKDFLSNFV 156

Query: 124 ESRKHTPSSAIQFLT----------------SMRVLFKWAVRQEYVAINPCLS---VERP 164
           +  K    ++   L                  +R     A ++  + INP       ++ 
Sbjct: 157 DFLKQAKKASKYGLAKAGGVLSNNSVVAYYGVLRTALNKAFKEGIITINPTKEFNFADKV 216

Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNN 220
           K +       T E+++   +   +    + AF F    GLR SD  +     L    +  
Sbjct: 217 KAEASRREYLTIEELKLLIATECKYEIMKQAFLFSCLCGLRVSDIRKLKWSDLQKSGERI 276

Query: 221 IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ-FSIWFKAKATK 279
              IK QKT   + + + D  +K L      K+  FI      +      +   +  A  
Sbjct: 277 RIEIKMQKTKEPLYLPISDEALKWLPQRGEAKDDDFIF----PLTHEGTINNILQKWAKA 332

Query: 280 AGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
           AGV K  S H  R   AT+    GA  + +    G K +   + Y K  D+ +
Sbjct: 333 AGVTKHISFHVARHTHATMMLTLGADLYTVSKLLGHKNIATTQIYAKIVDKKK 385


>gi|183600875|ref|ZP_02962368.1| hypothetical protein PROSTU_04475 [Providencia stuartii ATCC 25827]
 gi|188019658|gb|EDU57698.1| hypothetical protein PROSTU_04475 [Providencia stuartii ATCC 25827]
          Length = 354

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 55/340 (16%), Positives = 110/340 (32%), Gaps = 34/340 (10%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGS-----TPKREYI 61
           LPP +     R G   Y +R        + Y        A   A++ +       +    
Sbjct: 12  LPPNLYC---RKG--YYSYRN---PETGIEYGIGRNKAEAVNEAISANLFIYGKKESLIN 63

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121
                        I  + +      L   +   ++    +I     +    +I TK I  
Sbjct: 64  RMASNDAIKFHDWIDRFGEIILLRDLKKKTLDDYQGRLKRIKNSFNNVPLSEIKTKDIAD 123

Query: 122 GVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
            + +       ++A    + ++ +F  A+    V  NP ++   P+ K    R  ++ D 
Sbjct: 124 YINNIVSDGNITTARLMRSILKDMFNEAMSDGVVDFNPVIATRVPRNKIARTRM-SESDY 182

Query: 180 QQFKSFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237
            Q  +   E  QP   ++ +  + +G R  D  +     + +    I+ +KTGT I + L
Sbjct: 183 IQIYNTAVEHCQPWVSMSMDLAILTGQRSGDIRKLKWDDVHDGFLWIEQEKTGTKIAIPL 242

Query: 238 P-------DGFMKLLAMTP---IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--- 284
                        +L        GKE   ++     +        F    +K+G++    
Sbjct: 243 TISNNIANKTLQSVLDRCKHELNGKEFVLVSQKGDMLADKTIGKAFSLARSKSGLSWEGS 302

Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
             + H +R   A+       +        G K++D    Y
Sbjct: 303 PPTFHEIR-SLASRVYGNEKSNEFANQLLGHKSMDMTRMY 341


>gi|254510675|ref|ZP_05122742.1| putative integrase for prophage CP-933U [Rhodobacteraceae bacterium
           KLH11]
 gi|221534386|gb|EEE37374.1| putative integrase for prophage CP-933U [Rhodobacteraceae bacterium
           KLH11]
          Length = 382

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 59/343 (17%), Positives = 112/343 (32%), Gaps = 35/343 (10%)

Query: 3   PSLRLPPFVTKER--TRHG-KIIYYFRKGHGRRI---RLPYPHESTFIPAYMSALTGSTP 56
           P   LP  V + R  T  G K  +Y  +G G +     +  P +  F+ A+ +    S  
Sbjct: 12  PRSSLPKGVHRVRRDTVEGVKFHFYAWRGGGPKFWESSVREPRDPEFLIAF-AEKAKSRF 70

Query: 57  KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT 116
             EY+            ++  +  S         ++  +  +  +  ++  D   +    
Sbjct: 71  GAEYMTPE---------MVDGFLDSTAMPK-GERTQADYRKWALRFAKEFADDPAKLWEN 120

Query: 117 KHIR----SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
              R          K +P       T    +  WA  +  +A + C  + R         
Sbjct: 121 PKSRGELNEWRAKWKDSPKQHDYAGTVAVRILNWARDEGKIAAHFCDRLHRIYTVDRAEI 180

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----NNIFSIKTQK 228
            WT  D Q++    +     R+       +GLR +D  R    +L+       F ++TQK
Sbjct: 181 VWTDAD-QRYFKEAAPPWVQRVM-TLACETGLRPADLVRLTRGNLESFDGIERFRVRTQK 238

Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHG 288
            G +  + +     +L+  T   +    +N+  + +  T  S        +     S   
Sbjct: 239 RGRVAHIPVTPELRQLIDETAADQLVLLVNDRNKPLKPTSASRAIARYRDRITDKLSDPT 298

Query: 289 V-----RKFSATISADAGATAHELMATYGWK---TVDQAETYT 323
           +     R  +AT    AG   +++    GW         E Y 
Sbjct: 299 LRLQDTRGTAATRLLRAGLGLNQIANHMGWSLRYAAAVIEHYA 341


>gi|116619488|ref|YP_821644.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116222650|gb|ABJ81359.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 303

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 53/287 (18%), Positives = 104/287 (36%), Gaps = 28/287 (9%)

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD--------YRKIT 115
           P  +P+ L+  I  Y +       + +S  ++ES   Q +      D           + 
Sbjct: 2   PSSEPSELERQIVLYLEDLARAGNSEHSIRAYESDLRQFLAFLSPPDLAPPAPAAIDLLI 61

Query: 116 TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
            +   +G+     +  +  + L ++R LF++ +R+  V +N    V  PK   +     T
Sbjct: 62  LREWLAGLYRDDLSAVTLRRKLAAVRGLFRFLLREGVVPLNVACLVRTPKAPKKLPEVMT 121

Query: 176 KEDMQQF-------KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
            + +          +      ++ R  FE L   G+R S+     ++ +      ++ + 
Sbjct: 122 ADQVNSLIDGVGGVELERPHPARDRAIFELLYGCGIRVSELAGLNLEDIDRTEGWLRVRG 181

Query: 229 TGT-IITVELP----DGFMKLLAMTPIGKE--TFFINNDKQKMNATQFSIWFKAKAT--- 278
            G     V LP        + LA  P+ +E    F+N+ + ++     S   K  AT   
Sbjct: 182 KGKKERQVPLPGQAAQSLERYLAERPVAREQPAVFVNHRRARLTTRGISGIVKLYATYLS 241

Query: 279 -KAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              G++   H  R   AT     GA    +    G   +   + YT+
Sbjct: 242 NDPGIH--PHSFRHAYATHLLADGADLRAIQELLGHARLSTTQKYTQ 286


>gi|118467405|ref|YP_888043.1| site-specific tyrosine recombinase XerD [Mycobacterium smegmatis
           str. MC2 155]
 gi|118168692|gb|ABK69588.1| tyrosine recombinase XerD [Mycobacterium smegmatis str. MC2 155]
          Length = 318

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 42/266 (15%), Positives = 89/266 (33%), Gaps = 33/266 (12%)

Query: 90  NSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES-RKHTPSSAIQFLTSMR------- 141
           + R     Y + + ++ G  D  ++    +   + + R+  P + +  L+++        
Sbjct: 35  SYRRDLRRYAEHLRQR-GIDDLARVAESDVSDFLVALRRGDPDAGVTALSAVSAARAVVA 93

Query: 142 --VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF--------KSFWSEGSQ 191
              L ++A  +     +   +V+ P       +  T +++           ++      +
Sbjct: 94  VRGLHRFAAAEGLTENDVARAVKPPTPSRRLPKSLTLDEVLALLEAAGGDSEADSPLTLR 153

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKLL----- 245
            R   E L  +G R S++    V  +       +   K G    V +    +  L     
Sbjct: 154 NRALLELLYSTGARISEAVGLDVDDVDTQARSVLLHGKGGKQRLVPIGRPAVSALDAYLV 213

Query: 246 ------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATIS 297
                 A    G    F+N    +++        +  A +AG+    S H +R   AT  
Sbjct: 214 RGRPDLARRGRGTPAIFLNARGGRLSRQSAWQVLQDSAERAGIASAVSPHTLRHSFATHL 273

Query: 298 ADAGATAHELMATYGWKTVDQAETYT 323
            D GA    +    G  +V   + YT
Sbjct: 274 LDGGADVRVVQELLGHASVTTTQIYT 299


>gi|15672627|ref|NP_266801.1| integrase-recombinase [Lactococcus lactis subsp. lactis Il1403]
 gi|12723549|gb|AAK04743.1|AE006297_6 integrase-recombinase [Lactococcus lactis subsp. lactis Il1403]
          Length = 312

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 42/302 (13%), Positives = 94/302 (31%), Gaps = 36/302 (11%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG-----DFDYRKITTKHIR---SG 122
            + L+ EY      G+ +  +   +E + D+ I         + D   I   H +   S 
Sbjct: 4   FEQLVKEYLLELKLGNYSKKTMAVYEQHIDKFIDFYKKEICKEMDIYAINKMHYKLFISQ 63

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           +       +     L S +  + + +R++ +  +P  S++  K   + +  +  ++++  
Sbjct: 64  LLDNSLRATYINAILKSNKAFYSYLIREQVLKTSPMDSIKLLKETKQALTTFNDDEVKAM 123

Query: 183 KSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
            + W+  +    + +     L  +G+R S+        L +    +   K      V + 
Sbjct: 124 LNVWNFNTYLNARNKCIIAVLADTGIRISELINIKDSDLTDQYIRV-LGKGDKWRVVPIS 182

Query: 239 DGFMKLLAMTPI-------------------GKETFFINNDKQKMNATQFSIWFKA---- 275
           +    LL                          E F  N  +     T   +        
Sbjct: 183 NELNYLLTKYKRLRDNHFNKIRNRNGKVRELDSELFLGNTGRSIKTITNIEVMITQTGLQ 242

Query: 276 KATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335
              +A V  S H  R +    S + G     +    G   +   + Y +     +L  K 
Sbjct: 243 ANVRASVRCSPHQFRHYWTCKSLELGQDIFTISKLLGHTNLSTTQIYLQKLTNEQLISKA 302

Query: 336 SR 337
            +
Sbjct: 303 VK 304


>gi|307700994|ref|ZP_07638019.1| site-specific tyrosine recombinase XerD [Mobiluncus mulieris
           FB024-16]
 gi|307613989|gb|EFN93233.1| site-specific tyrosine recombinase XerD [Mobiluncus mulieris
           FB024-16]
          Length = 319

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 44/284 (15%), Positives = 92/284 (32%), Gaps = 32/284 (11%)

Query: 85  GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHTPSS--------A 133
              + ++  +++    + +      G     ++T   +   V +     +S         
Sbjct: 28  RGASPHTIAAYQRDLQRYVAYLQILGRDTLAQVTEIDLEGFVRALGDGFASFPPLGSTSV 87

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG---- 189
            + L + R   ++      +  N   SV+  K           E+M+   +  S      
Sbjct: 88  RRCLAAARSWHRYLFDSGSLGANVASSVKPAKLPRRLPETLNLEEMEALLAAASSPGDSN 147

Query: 190 -SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELP-----DGF 241
             + R   EFL  SG R S++    +  +        ++    G    + +         
Sbjct: 148 SLRDRALLEFLYASGARISEAMNLVLDDIDFETEPALVRLFGKGRKERISMLGHQACQAL 207

Query: 242 MKLL-AMTPI------GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292
              L  + P        +   F+N   + M+        +A A +A +++    H +R  
Sbjct: 208 QAYLVRVRPTLAEKGQSRGRVFLNTYGKPMSRQTAWAIIQAAAKRAQIDRPVHPHTLRHC 267

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
            AT     GA    +    G  +V   E YTK + ++ L +  S
Sbjct: 268 FATHLLQGGADIRVVQELLGHASVTTTEIYTKVSKQMLLEVYAS 311


>gi|312621006|ref|YP_003993734.1| site-specific recombinase, phage integrase family [Photobacterium
           damselae subsp. damselae]
 gi|311872727|emb|CBX86821.1| site-specific recombinase, phage integrase family [Photobacterium
           damselae subsp. damselae]
          Length = 499

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 56/327 (17%), Positives = 116/327 (35%), Gaps = 13/327 (3%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYI--NSPRK 66
           P +  +    G+ +Y  R     +++     ++  +    + L       E++   S   
Sbjct: 26  PSLVVQVFPKGRKVYQVRTRTDNKVKTRTLGDTATLALKEARLMAKKQVNEWLEAQSDIS 85

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVES 125
           +  TL   +    K   +      ++++   Y    ++   GD+    +  + +    E+
Sbjct: 86  QSPTLGTFMQCEWKEQVFNRWKPRTQVTASHYMTKWLLPSLGDYALVNLGYREVNEWFEN 145

Query: 126 RKHT-PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER-PKRKTEGIRPWTK-----ED 178
              T    A + L  ++ +F  A+R  Y   +PC  + R PK++       ++     E 
Sbjct: 146 MSLTTKGGANRALDVLKSVFVLAMRLGYCHHDPCRLINRNPKKRFNRFLSRSELKNLGEI 205

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
           + + +S  +   Q       LL +G R S+        ++ N+  +   KTG   TV L 
Sbjct: 206 LARLESESASYQQQANIVRMLLLTGCRVSEILTLQWTMIKPNLIDLPDSKTGAR-TVYLS 264

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATIS 297
           +    +L + P      F      K   T  S +++     A V +   H +R   A+ +
Sbjct: 265 EDANAILRLQPRMTPWVFPAPRTDK-PYTSISAFWQKVRNLANVPEVRIHDLRHTFASYA 323

Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324
           A  G +   +    G         Y  
Sbjct: 324 ALQGNSVPMIAKMLGHSRFSMTLRYAH 350


>gi|30019424|ref|NP_831055.1| DNA integration/recombination/invertion protein [Bacillus cereus
           ATCC 14579]
 gi|229126686|ref|ZP_04255698.1| DNA integration/recombination/invertion protein [Bacillus cereus
           BDRD-Cer4]
 gi|29894968|gb|AAP08256.1| DNA integration/recombination/invertion protein [Bacillus cereus
           ATCC 14579]
 gi|228656626|gb|EEL12452.1| DNA integration/recombination/invertion protein [Bacillus cereus
           BDRD-Cer4]
          Length = 370

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 48/286 (16%), Positives = 96/286 (33%), Gaps = 39/286 (13%)

Query: 77  EYRKS---AHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH---T 129
           EY +S       S+ + +    + Y + +II   G+    K+T+ H+++ V S +     
Sbjct: 69  EYLESWFNTKRHSVGIQTAKVLKGYLNSRIIPSLGNIKLAKLTSLHMQNYVNSLRDEGLK 128

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
             +  + +  +R   + A+  E +  N     + PK   E +  W ++++Q F     +G
Sbjct: 129 RGTIEKIIKVIRNSLEHAIDLELITKNVAAKTKLPKADKEELTVWNEQEVQLFLKAAQDG 188

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--------------NNIFSIKTQKTGTIITV 235
            +  + F   L +G+R  +      + +               +    +   KT + +  
Sbjct: 189 -RYSIVFHMALVTGMRQGELLGLRWKDVDLEKGHLIISQTLSHDGKTFLVGGKTKSSLRK 247

Query: 236 ELPDG-----FMKLLAMTPIGK----------ETFFINNDKQKMNATQFSIWFKAKATKA 280
            L          K  A+    K          +          +N         A   KA
Sbjct: 248 ILLPASTIAKLKKHRAVILKEKLSQGEEYQDNDLVMCTPSGTPINPANVRRSLNALIQKA 307

Query: 281 GVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
            V K   H +R   AT+    G     +    G   +    +TY+ 
Sbjct: 308 AVPKIRFHDLRHTHATLLLAKGVNVKVISERLGHSNIKITLDTYSH 353


>gi|16800384|ref|NP_470652.1| hypothetical protein lin1316 [Listeria innocua Clip11262]
 gi|34222949|sp|Q92C75|XERC_LISIN RecName: Full=Tyrosine recombinase xerC
 gi|16413789|emb|CAC96547.1| codV [Listeria innocua Clip11262]
          Length = 300

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 42/273 (15%), Positives = 100/273 (36%), Gaps = 27/273 (9%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGD---FDYRKITTKHIRSGVESRKHT---P 130
           +Y  S    + + ++  ++E+      R   +    +Y+++T   +R  +   K      
Sbjct: 13  DYLHSER--NYSEHTSTAYENDLSDFRRFLNEQAIIEYQQVTFLDVRIYLTELKQKSFSR 70

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-----FKSF 185
           ++  + ++S+R  + + +R+  +  NP   V   K +    + +  E+M+      ++  
Sbjct: 71  TTVARKISSLRSFYTFLLRENVITENPFTYVSHAKNQLRLPKFFYSEEMEALFQVVYEDN 130

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVE-------- 236
            +   + R+  E L  +G+R S+     +  L  +  +I    K      V         
Sbjct: 131 ETLTLRDRVILEVLYGTGIRVSECAGIMLSDLDTSYQAILIRGKGNKERYVPFGAYAEDA 190

Query: 237 LPDGFM---KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRK 291
           + D      +L+       ++  IN+    +             +KA + +    H +R 
Sbjct: 191 ITDYLSGRIELMTRFKKTHDSLLINHYGDPLTTRGIRYCLTKIISKASLTRKIHPHMLRH 250

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK 324
             AT   + GA    +    G  ++   + YT 
Sbjct: 251 TFATDLLNNGADMRTVQELLGHASLSSTQIYTH 283


>gi|94311976|ref|YP_585186.1| phage integrase [Cupriavidus metallidurans CH34]
 gi|160898186|ref|YP_001563768.1| integrase family protein [Delftia acidovorans SPH-1]
 gi|93355828|gb|ABF09917.1| tyrosine-based site-specific recombinase [Cupriavidus metallidurans
           CH34]
 gi|160363770|gb|ABX35383.1| integrase family protein [Delftia acidovorans SPH-1]
          Length = 415

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 56/320 (17%), Positives = 115/320 (35%), Gaps = 26/320 (8%)

Query: 45  PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-II 103
             +++ +           + R  P T+K L +++ +         +++  +++  D+ I+
Sbjct: 91  QEWLAEVRRGGDPSAAKAAARSAP-TVKELCTKFMEDYSKQRNKPSTQRGYQAVIDRCIV 149

Query: 104 RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA--INPCLSV 161
              G    + +    + + ++   H P+ A +  + MR +F  A    +     NPC  V
Sbjct: 150 PMLGRLKVQDVKRPDVATAMKKMAHKPAEANRAFSVMRKMFNLAEVWGHRPDGTNPCRHV 209

Query: 162 ERPKRKTEGIRPWTKEDM----QQFKSFWSEGSQPR---LAFEFLLYSGLRCSDSCRAGV 214
                  +     + EDM    ++ +   +EG +     LA         R S+      
Sbjct: 210 PM-YPNGKATHLISDEDMGKLFRRLEHIEAEGLENYVIPLAIRLQFEFAGRRSEIVTLRW 268

Query: 215 Q--HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI----NNDKQKM-NAT 267
               L N        KTG +    + +   +LL+  P  + T ++    ++  + +    
Sbjct: 269 DWVDLDNRRVVWPDSKTGGMSK-PMSEEAYRLLSTAPRQEGTPYVLPSPSHPGKHLTTGE 327

Query: 268 QFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
            +  W +A       +   HG+R  SAT  A++G      MA    KTV     Y    D
Sbjct: 328 YYGGWSRALKAAGATHVGTHGIRHRSATDIANSGIPVKVGMALTAHKTVAMFMRYVHTED 387

Query: 328 RIRLGIKNSRRISSVVDSDD 347
                    R+ + +V +  
Sbjct: 388 ------DPVRKAAELVANRR 401


>gi|17547341|ref|NP_520743.1| integrase protein [Ralstonia solanacearum GMI1000]
 gi|254241660|ref|ZP_04934982.1| hypothetical protein PA2G_02364 [Pseudomonas aeruginosa 2192]
 gi|17429644|emb|CAD16329.1| integrase-tyrosine recombinase protein [Ralstonia solanacearum
           GMI1000]
 gi|126195038|gb|EAZ59101.1| hypothetical protein PA2G_02364 [Pseudomonas aeruginosa 2192]
          Length = 400

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 58/325 (17%), Positives = 106/325 (32%), Gaps = 33/325 (10%)

Query: 44  IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-I 102
           +     A            +  +K  T+K L +++ +         +++  ++S  D+ I
Sbjct: 73  LAQEWLAQVRRGGDPAADKAQARKAPTVKELCTKFMEDYSKLRNKPSTQEGYQSVIDRNI 132

Query: 103 IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA--INPCLS 160
           +   G    + +    +   ++   H P+ A +  + MR +F  A    Y     NPC  
Sbjct: 133 VPMIGRMKVQDVKRPDVAGMMKKMTHKPADANRTFSVMRRMFNLAEVWGYRPDGTNPCRH 192

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWS-----------EGSQPRLAFEFLLYSGLRCSDS 209
           V       +     + EDM +                      RL FEF      R  + 
Sbjct: 193 VPMFP-NGKATHLISDEDMGKLFRHLEHLEAEGMESYVIPLAIRLQFEFA----GRRGEI 247

Query: 210 CRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI----NNDKQK 263
                  +   N        KTG +    + +   +LL+  P   +  ++    N   Q 
Sbjct: 248 VTLQWDWVDFENRRVVWPDSKTGGMSK-PMSEEAYRLLSTAPRRDDCPYVLPSPNRPGQH 306

Query: 264 MNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           +   ++   +      AG      HG+R  SAT  A++G      MA    KTV     Y
Sbjct: 307 LTTGEYYNGWSRALKAAGAAHVGTHGIRHRSATDIANSGIPVKVGMALTAHKTVAMFMRY 366

Query: 323 TKGADRIRLGIKNSRRISSVVDSDD 347
               D         R+ + +V +  
Sbjct: 367 VHTED------DPVRKAAELVANRR 385


>gi|259909532|ref|YP_002649888.1| site-specific tyrosine recombinase XerC [Erwinia pyrifoliae Ep1/96]
 gi|224965154|emb|CAX56686.1| site-specific tyrosine recombinase [Erwinia pyrifoliae Ep1/96]
          Length = 344

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 54/304 (17%), Positives = 108/304 (35%), Gaps = 31/304 (10%)

Query: 64  PRKKPTTLKWLI---SEYRKSAHWGS--LAVNSRISFESYF---DQIIRKSGDFDYRKIT 115
           P   P +L  L+    ++R+  +W    L V +   +       ++ I  + D     + 
Sbjct: 24  PAHDPKSLYALLLRFVKWRRERNWSETTLKVQTHHGYRFICWAQERGIHHAADVTRPVLE 83

Query: 116 T--KHIRSGVESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
              +H+    +      +P +    L  ++V F+W  +Q  +  NP   +E P+ +    
Sbjct: 84  RWQRHLYRYRKGNGEPLSPRTQRTALQPLQVWFRWLAKQNLILANPAADLELPRLEKHLP 143

Query: 172 RP-WTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGV--QHLQNNIFSI 224
           R   + E ++   +        G + R   E L  +G+R  +  R           I +I
Sbjct: 144 RTILSVEQVEDIVNLCDLNTLQGMRDRALLELLWSTGIRRGEVARLETWSADFSRKILTI 203

Query: 225 KTQKTGTIITVELPDGFMKLLA----------MTPIGKETFFINNDK-QKMNATQFSIWF 273
              K      + + +  +  L           +   G +  F+  D    + A   +   
Sbjct: 204 VQGKGKQDRVIPVGERALWWLRHYLHEVRPEIVAVAGCKALFVAMDGVAGLTANGITHAV 263

Query: 274 KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
                 AG+ K S H  R   AT   + GA    + A  G ++V+  + YT+ + +    
Sbjct: 264 VPYLRAAGIEKGSCHLFRHAMATQMLENGADLRWIQAMLGHRSVESTQIYTQVSIKALQA 323

Query: 333 IKNS 336
           +  S
Sbjct: 324 VHAS 327


>gi|168179463|ref|ZP_02614127.1| phage integrase [Clostridium botulinum NCTC 2916]
 gi|182669587|gb|EDT81563.1| phage integrase [Clostridium botulinum NCTC 2916]
          Length = 387

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 60/325 (18%), Positives = 107/325 (32%), Gaps = 54/325 (16%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF-----DYRKITTKHIRSGVES 125
           L  L+  +        +  +S   +E  +   I+ S  F     D + I  +   + + S
Sbjct: 66  LGELMHTWLFEIMRVKVKPSSFERYEGIYRNYIKNSQLFGLKLADLKTIQVQRYYNELYS 125

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS----VERPKRKTE-GIRPWTKEDMQ 180
              T S        +R    +AV + Y+  NPCL     +   K K E  I  +T +++ 
Sbjct: 126 AGKTSSVIENLNKLLRTFLNYAVNEGYILKNPCLGSKIIIPGNKDKKENEIEIFTDKEIT 185

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK------------ 228
             K    EG + +      L SGLR  +        +  + F I+  K            
Sbjct: 186 ALKKAL-EGHRLKCLILLALGSGLRQGELLALRWSDINFDTFEIQVNKSIKHVKIISPDG 244

Query: 229 TGTIITV-------------ELPDGFMKLLAMTP--------------IGKETFFINNDK 261
           TG   T+              +P   + +L                  I K   F N   
Sbjct: 245 TGERKTIEQSPKSKTSNRIVPIPSKLINVLEEHKALQDIEKKAAGSSYIDKNLIFANEIG 304

Query: 262 QKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QA 319
           + +        +K     AG+ +K  H +R   AT   + G     +    G K +   A
Sbjct: 305 RPILVKNIFRIYKNILISAGIKHKKFHSLRHTYATKLFEKGVQLKTVQKLLGHKDISITA 364

Query: 320 ETYTKGADRIRLGIKNSRRISSVVD 344
           + YT    + +  +    +++ + D
Sbjct: 365 DIYTHVMPKEK--VLAVDKLNDLFD 387


>gi|148284908|ref|YP_001248998.1| phage-related integrase [Orientia tsutsugamushi str. Boryong]
 gi|146740347|emb|CAM80771.1| phage-related integrase [Orientia tsutsugamushi str. Boryong]
          Length = 247

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 41/200 (20%), Positives = 77/200 (38%), Gaps = 8/200 (4%)

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           ++A   L ++R +F  A++   +  NP L +E+ K +    R  + ++M +F       +
Sbjct: 18  ATANALLATLRTIFNKAIKWGLIENNPTLGIEQHKLQARERR-LSYDEMGRFLQVLCGEA 76

Query: 191 QP--RLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLA 246
            P  R      LY+G R S+       ++     I+ I   K G    + L D  M++L 
Sbjct: 77  SPLIRDFALLALYTGARKSNVLEMEWDNIDFERKIWHIPKTKNGKAQNIPLTDEAMEILQ 136

Query: 247 MTP-IGKETFFINNDKQKMNATQFSI-WFKAKATKAGV-NKSAHGVRKFSATISADAGAT 303
               I    + + +   +          +K    KA + N   H +R+  A+   DAG +
Sbjct: 137 ARKLISTSKWVLPSSTSESGHLSHPNTAWKIICEKASIKNFRIHDLRRTFASCMGDAGES 196

Query: 304 AHELMATYGWKTVDQAETYT 323
              +         +    YT
Sbjct: 197 QRTISIALNHINPNSTIPYT 216


>gi|50122330|ref|YP_051497.1| site-specific tyrosine recombinase XerC [Pectobacterium
           atrosepticum SCRI1043]
 gi|50122339|ref|YP_051506.1| site-specific tyrosine recombinase XerC [Pectobacterium
           atrosepticum SCRI1043]
 gi|49612856|emb|CAG76306.1| probable integrase/recombinase protein [Pectobacterium atrosepticum
           SCRI1043]
 gi|49612865|emb|CAG76315.1| probable integrase/recombinase [Pectobacterium atrosepticum
           SCRI1043]
          Length = 344

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 42/289 (14%), Positives = 100/289 (34%), Gaps = 32/289 (11%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQI---IRKSGDFDYRKITTK--------- 117
           TL+   + Y +     + +  +  ++            + G     +++           
Sbjct: 20  TLRQYTTAYLEHLTATNHSPRTVEAYSERLRPFVTWCEERGLTQAAQVSLSVLEAYQRHL 79

Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI-RPWTK 176
           H     + +       +  L+++R LF+W +++ ++  NP   +  PK +     +  ++
Sbjct: 80  HGYRKADGKPLAQGGQLNRLSAIRGLFRWLLQRHHILYNPAEQITLPKAEKRLPAQILSE 139

Query: 177 EDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTG 230
           E+ +            G + R   E L  +GLR S+     +  +     +  ++  K  
Sbjct: 140 EETEAVMEAQDTDTLTGLRNRAVLEMLWSTGLRRSELSGLMLADVDVGRGVLVVRQGKGN 199

Query: 231 TIITVELPDGFMKLLAM----------TPIGKETFFINNDKQKMNATQFSIWF-KAKATK 279
               V +    +  +            T       F+    +++  +  +I   +A    
Sbjct: 200 KDRVVPVGLRALVWVQRYLDAVRPRLTTKHDSGYLFVTIWGKRLARSTLTILAGRAIRDD 259

Query: 280 AGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           A + K+   H  R   AT   + GA    + A  G + ++  + YT+ A
Sbjct: 260 AHLKKAGACHVFRHSMATQMLERGADTRHIQAILGHEKLETTQIYTRVA 308


>gi|288870073|ref|ZP_06112814.2| integrase/recombinase, phage integrase family [Clostridium
           hathewayi DSM 13479]
 gi|288868544|gb|EFD00843.1| integrase/recombinase, phage integrase family [Clostridium
           hathewayi DSM 13479]
          Length = 376

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 42/268 (15%), Positives = 85/268 (31%), Gaps = 21/268 (7%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRS-GVESRKHTPS 131
           I  +  S    +   N+   +      ++   G    D   +  ++      E R    S
Sbjct: 94  IRMFVASKKAVNRQTNTLKQYTREICNMLDFLGKRLEDITGMDLRYYYGVMRERRGIKMS 153

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           +    L  +   + + + ++ V+ NP   V   K +    +P++  +M+  ++  SE  +
Sbjct: 154 TMQTRLHYLSSFWDFMITEDLVSSNPVKKVGLLKIEKTIKKPFSAAEMEALRTSCSE-LR 212

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG----FMKLLA 246
            R   EFL  +G+R S+     V  ++     +    K        L DG      + L 
Sbjct: 213 DRALVEFLYSTGVRVSELVSLNVGDIEMGKQELIVYGKGSKERKTYLTDGAKFYLRRYLR 272

Query: 247 MTPIGKETFFINNDKQK-----------MNATQFSIWFKAKATKAGVNK-SAHGVRKFSA 294
                +         +            +         +    +AGV     H  R+  A
Sbjct: 273 TRCENEGMTMEELQGRPLFATLDRPHGRLTVAGVQYMLRQLGRRAGVEGVHPHRFRRTIA 332

Query: 295 TISADAGATAHELMATYGWKTVDQAETY 322
           T     G    ++    G + +D    Y
Sbjct: 333 TDLLSRGMPIEQVKEFLGHEKLDTTMIY 360


>gi|257869686|ref|ZP_05649339.1| site-specific recombinase [Enterococcus gallinarum EG2]
 gi|257803850|gb|EEV32672.1| site-specific recombinase [Enterococcus gallinarum EG2]
          Length = 299

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 44/281 (15%), Positives = 100/281 (35%), Gaps = 36/281 (12%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIR---SGVE 124
            ++LI E          +  ++ +++   +   + +++SG+ D+  I  + +R   S + 
Sbjct: 11  FRYLIVE-------RGYSDKTKSAYQEDMEDFFRFLKESGNEDFLAIDHRDVRVYLSFLN 63

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
            R ++ +S  + + S+R  + +  + E +  NP   +   K+  +  R + +++M+    
Sbjct: 64  ERNYSRNSISRKMASLRSFYHFLTKHEVIKENPFAYIHLKKKNAKLPRFFYEKEMEALFE 123

Query: 185 ----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPD 239
                     + R   E L  SGLR S+     +  +   N   +   K      V    
Sbjct: 124 SVKGHEPLQQRNRALLEILYGSGLRVSECSNLTLSDVDWENGVLLIHGKGNKDRYVPFGS 183

Query: 240 GFMKLLA------------MTPIGKETFFINNDKQKMNATQ----FSIWFKAKATKAGVN 283
              + L                   E  F+N+    + AT      +   +  +  + ++
Sbjct: 184 YAQEALRDYVSAGRQQLMEKHHKRHEIVFVNHLGDGITATGIEYVLNQIIRKSSLDSKIH 243

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              H +R   AT   + GA    +    G   +   + Y  
Sbjct: 244 --PHMLRHTFATHLLNHGADMRTVQELLGHANLSTTQIYAH 282


>gi|312621873|ref|YP_004023486.1| integrase family protein [Caldicellulosiruptor kronotskyensis 2002]
 gi|312202340|gb|ADQ45667.1| integrase family protein [Caldicellulosiruptor kronotskyensis 2002]
          Length = 310

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 39/279 (13%), Positives = 89/279 (31%), Gaps = 20/279 (7%)

Query: 64  PRKKPTTLKW--LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121
           P++    + W   + ++         +  +   +E +         +  + +   K    
Sbjct: 2   PKRSVIKMDWREALQQFLFYKRAEGRSELTLRDYEYHVTHFFDLYPNCFHDEQQLKKCLY 61

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM-Q 180
              S+   P++    LT ++  FKW V +  +  NP   +  PK+K EG       ++ +
Sbjct: 62  EYLSQPIKPATYNLRLTYLKAFFKWCVEENILKSNPLEGL--PKKKAEGRIVNIDTEILE 119

Query: 181 QFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI----KTQKTGTI 232
           +      +    G +        L +G+R  ++    ++H       +       KT   
Sbjct: 120 KLLKLPDKNTFCGLRDYALILLTLDTGIRPKEAFSLLIEHFDFKTLQVFIPSDAAKTRVS 179

Query: 233 ITVELPDGFMKLLAMTPI-------GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS 285
             + +       +             K   F     + +    ++   +  + K GV   
Sbjct: 180 RVLPILPVTANAVKKLIAVRHPEWDEKVPVFCTVTGRPLTRDIWNDRMEMYSKKLGVKIR 239

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            + +R   A +    G     L  T G  T++  + Y  
Sbjct: 240 PYDLRHTFALLYLKNGGYELSLQKTLGHTTLEMTKRYVH 278


>gi|261379271|ref|ZP_05983844.1| tyrosine recombinase XerC [Neisseria subflava NJ9703]
 gi|284797703|gb|EFC53050.1| tyrosine recombinase XerC [Neisseria subflava NJ9703]
          Length = 298

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 44/267 (16%), Positives = 94/267 (35%), Gaps = 17/267 (6%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH----IRSGVESRKHTP 130
           +  Y K+      + ++  ++     +++R   D     + T+     +   +  +  + 
Sbjct: 11  LERYLKTLSQQGKSQHTVSAYRRDLSELMRLLPDNLENGLPTRRDFVAVLKKLSQKGLSE 70

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           SS  + L++ R    W V+ E +  +P  +++ P+      +   +E +           
Sbjct: 71  SSLARKLSAWRQYCSWLVQIEVMESDPTFNMKAPRLPERLPKALLQEPLNHILDHAPVDD 130

Query: 191 ----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVEL----PDGF 241
               + +  FE +  SGLR S+     +  +  +   +    K G    V L        
Sbjct: 131 ELDVRDKAMFELMYGSGLRLSEIQGLNLNSIVLDEGWVSVNGKGGKQRQVPLVGKSIAAL 190

Query: 242 MKLL--AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS 297
              L   +   G++  F N +  ++   Q     +A A + G   + S H +R   AT  
Sbjct: 191 RDYLAVRIAKEGEQALFTNKNGGRLGQRQIQKRLQAWAVRVGSASHISPHMMRHSYATHL 250

Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324
             A      +    G   +   + YTK
Sbjct: 251 LQASGDIRAVQELLGHSNLSATQVYTK 277


>gi|89098652|ref|ZP_01171534.1| tyrosine recombinase [Bacillus sp. NRRL B-14911]
 gi|89086614|gb|EAR65733.1| tyrosine recombinase [Bacillus sp. NRRL B-14911]
          Length = 260

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 36/237 (15%), Positives = 83/237 (35%), Gaps = 20/237 (8%)

Query: 110 DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
           D      +   + +  +K +  SA + ++S+R  +K+  R++    NP  +V  PK +  
Sbjct: 11  DVEYFDVRLYLTRLYEQKLSRKSAARKISSLRSFYKFLAREKLANDNPFSAVSLPKLEKR 70

Query: 170 GIRPWTKEDMQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225
               + +E++             G + +   E L  +G+R S+  +  ++ +   + ++ 
Sbjct: 71  LPEFFYEEELNCLFESCETDSPLGKRNKALLELLYATGMRVSECSQISLKDIDMALSTVL 130

Query: 226 TQKTGTI-------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW 272
               G               + + + +G  +LL       +  F+N     +        
Sbjct: 131 VHGKGQKDRYIPFGSFAQDALELYITEGRKELLTGR-ESHDRLFVNFRGGPLTPRGIREI 189

Query: 273 FKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
                 K+ +  +   H +R   AT     GA    +    G   +   + YT   +
Sbjct: 190 LNKMIQKSSLEGTIHPHMLRHSFATHLLSNGADMRTVQELLGHAFLSSTQVYTHVTN 246


>gi|253581963|ref|ZP_04859187.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725]
 gi|251836312|gb|EES64849.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725]
          Length = 339

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 42/262 (16%), Positives = 103/262 (39%), Gaps = 10/262 (3%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           T+  + + + K  H+  L+  S+ ++ES +    +   D    ++ T H++  + + + +
Sbjct: 70  TIDDIYNRW-KEMHFKKLSKLSQSNYESNYTHF-KPLKDRKIAELKTIHLQEFMNNLELS 127

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE-GIRPWTKEDMQQFKSFWSE 188
            SS       +  LFK+A++ + +  +    +E  K +     + +T E++ +   +   
Sbjct: 128 ESSKRNIKRMLNQLFKYALKYDIIEKDYTQFIELGKVEKILERKIFTDEEISKLWKYKEL 187

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-KT--GTIITVELPDG-FMKL 244
                     ++Y+G+R  +      Q +     +I+   KT  G    + +       +
Sbjct: 188 EWVD--TILIMIYTGMRVGELLTIKNQDIDLENRTIRGGIKTDAGKNRLIPINMKILPFI 245

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATA 304
                   E   ++  ++ ++ + +  +FK    K  +  + H  R   A++ ++A A  
Sbjct: 246 KTRMTPSNEYLILSRKEKNLSYSSYITYFKKLMKKLDMEHTIHDCRHTFASLLSNADANK 305

Query: 305 HELMATYGWKTVDQAE-TYTKG 325
             +    G    D  E  YT  
Sbjct: 306 VSIAKIIGHSNYDMTEKIYTHK 327


>gi|330993350|ref|ZP_08317285.1| Tyrosine recombinase xerD [Gluconacetobacter sp. SXCC-1]
 gi|329759380|gb|EGG75889.1| Tyrosine recombinase xerD [Gluconacetobacter sp. SXCC-1]
          Length = 307

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 49/289 (16%), Positives = 93/289 (32%), Gaps = 28/289 (9%)

Query: 75  ISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVESRKH 128
           I  + +  A     A+N+  ++      +            T      +   +G+  +  
Sbjct: 6   IDAFLEMQAAERGAALNTLAAYARDLADMTAVLHAGGVTARTAGEADLRAYLAGLAGQGL 65

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
              +  + L+ ++  F +  R+     NP   +E P+  T   R  ++ +++   +  + 
Sbjct: 66  AARTQARRLSCLKQYFLFLAREGMRPDNPAALLEAPRLDTPLPRFLSEGEVEALLAACAP 125

Query: 189 GSQP-----------RLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVE 236
                          R A E L  SGLR S+      + L       +   K G    V 
Sbjct: 126 EPDATPARQRRLQVARAALEMLYASGLRISELLALPRRALDAAPGMMLVRGKGGRERMVP 185

Query: 237 L----PDGFMKLLAMTPIGKETFFINNDK--QKMNATQFSIWFKAKATKAGVN---KSAH 287
           +     +    L+      +  F        + M    F       A +AG++    S H
Sbjct: 186 MSARAREAARALMEADAARRSPFLFPGRGVARPMTRQGFDRILHDVALRAGLDPARLSPH 245

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIRLGIKN 335
            +R   AT     GA    L    G   +   + YT    DR+R  + +
Sbjct: 246 VLRHSFATHLLAHGADLRALQVLLGHADIATTQIYTHVMLDRLREAVAD 294


>gi|260892325|ref|YP_003238422.1| integrase family protein [Ammonifex degensii KC4]
 gi|260864466|gb|ACX51572.1| integrase family protein [Ammonifex degensii KC4]
          Length = 414

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 49/293 (16%), Positives = 94/293 (32%), Gaps = 43/293 (14%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH 128
           TL   ++ + ++   G L   +  ++E+     I+   G    R +T   +++   S   
Sbjct: 99  TLGEWLATWLETYKKGKLRPTTLANYETVIRAYILPSLGSVPLRSVTPASLQALYNSLSA 158

Query: 129 TPSSAIQFL---TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI-RPWTKEDMQQFKS 184
              SA         +    K AV+   +  NP  + E PK K     RP  +E+++ F  
Sbjct: 159 RGLSARTVRLVHVVLNACLKQAVKNGLLVRNPAEATEPPKLKRRVPVRPLAREEVEAFLK 218

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT--------------- 229
             + G +   AF   L +GLR  +      + +      ++ +++               
Sbjct: 219 -AARGERLYPAFALALKTGLRRGEVLGLKWEDVDLERGVLRVRRSLVEAKDPETGKVRLV 277

Query: 230 -------GTIITVELPDGFMKLLAMTPI--------------GKETFFINNDKQKMNATQ 268
                   +  TV L    + LL                        F     + +    
Sbjct: 278 FQEPKTEKSRRTVPLTRDVVALLKSHKARQNEEKLYFGEAYEDNGLVFCTELGKPIWPRN 337

Query: 269 FSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
           F   F +   KAG+     H +R   AT+   +G     +    G + +    
Sbjct: 338 FLRAFHSVLKKAGLERHRFHALRHTFATLLLASGEELKNVQELLGHERISTTA 390


>gi|254246904|ref|ZP_04940225.1| Phage integrase [Burkholderia cenocepacia PC184]
 gi|124871680|gb|EAY63396.1| Phage integrase [Burkholderia cenocepacia PC184]
          Length = 355

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 43/279 (15%), Positives = 88/279 (31%), Gaps = 30/279 (10%)

Query: 75  ISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV---ESRKHTP 130
           I+ Y  +  H   L+ ++  ++    D++ + +       +T   +R  V    +   + 
Sbjct: 55  IAAYLSNLKHVRQLSEHTLRAYTHELDELKKLAAGRPLDALTAADMRGAVVRGHAAGLSA 114

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
            S    L++ R  ++W  ++  +  NP   V  PKR+    +  + +D          G+
Sbjct: 115 RSISHRLSAWRAFYRWFAQRVEMPANPVAGVRAPKREKSLPKALSVDDAVALMDAPLAGT 174

Query: 191 ----QPRLAFEFLLYSGLRCSDSCRA-------------GVQHLQNNIFSIKTQKT---- 229
               +     E    SGLR ++                 G   L     +++ +      
Sbjct: 175 TESIRDHAILELFYSSGLRLAELVGLDVRYTQADGYRSAGWLDLAEAEVTVRGKGNKERK 234

Query: 230 ---GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284
              G+     L                  F++    +M+        K  A  AG+    
Sbjct: 235 VPVGSKAIDALNAWLAVRGEFVKHDPHPLFVSVRGNRMSPGVVRERVKRAALAAGIPANV 294

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
             H +R   AT    +      +    G  +V   + YT
Sbjct: 295 HPHVLRHSFATHVLQSSGDLRAVQELLGHASVAATQIYT 333


>gi|327313166|ref|YP_004328603.1| tyrosine recombinase XerC [Prevotella denticola F0289]
 gi|326944725|gb|AEA20610.1| tyrosine recombinase XerC [Prevotella denticola F0289]
          Length = 292

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 42/263 (15%), Positives = 98/263 (37%), Gaps = 23/263 (8%)

Query: 85  GSLAVNSRISFESYFD---QIIRKSGD-FDYRKITTKHIRSGVESRKHTPSSA---IQFL 137
            + +  + IS+    +   +  ++ G    +  + T  +R  +E      ++A    + +
Sbjct: 13  RNYSPMTVISYRKDLEAFERFCQELGPQITWESVDTDVVRDWMEDMMDKGNAASSVNRRI 72

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK--SFWSEGSQPRLA 195
           +++R  +++A+R   V+ +P   ++ P+R+    +   + +M+Q    + W++G    LA
Sbjct: 73  SALRSFYRFALRCGLVSKDPVHGLQGPRRQKPLPQFLKESEMEQLLDPAMWTDGYGDVLA 132

Query: 196 FEFL---LYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAM---- 247
              +     +G+R S+      + + +    +K T K      +       + LA     
Sbjct: 133 RTLIVTFYETGIRLSELTGLDDRDVDDVTCELKVTGKRNKQRIIPFGKELEETLAAYRCV 192

Query: 248 ----TPIGKETFFINNDKQKMNATQFSIWFKA--KATKAGVNKSAHGVRKFSATISADAG 301
               T       F     ++M   Q     K           ++ H +R   AT   +  
Sbjct: 193 RDARTGDSSPALFRTEKGERMTNAQVRALVKKNLSRVSTLKKRTPHVLRHTFATAMLNHE 252

Query: 302 ATAHELMATYGWKTVDQAETYTK 324
           A    +    G +++   E YT 
Sbjct: 253 AGLESVKKLLGHESLSTTEIYTH 275


>gi|227551195|ref|ZP_03981244.1| site-specific recombinase XerD [Enterococcus faecium TX1330]
 gi|227179663|gb|EEI60635.1| site-specific recombinase XerD [Enterococcus faecium TX1330]
          Length = 314

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 47/281 (16%), Positives = 98/281 (34%), Gaps = 34/281 (12%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFE---SYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127
           L++LI E          +  ++ ++E    +F   + +SGD D  K     +R  + +  
Sbjct: 24  LRYLIVE-------RGYSEKTKEAYEEDILHFKHFLEESGDADLLKAEYFTVRVYLSALA 76

Query: 128 H-----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
                 + +S  + + S+R  +++ +++E +  NP   V   K+     R + + +MQ  
Sbjct: 77  DHRPSYSRNSISRKIASLRSFYQYLLKEEVIKENPFSYVHLKKKNLRLPRFFYENEMQAL 136

Query: 183 KSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVEL 237
                       + R   E L  SG+R S+     V  +  ++   +   K        L
Sbjct: 137 FDSVAGDSPLDLRNRALLEVLYGSGIRLSECSNLLVSDIDFDSEVMLIHGKGNKERYAPL 196

Query: 238 ------------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS 285
                        +G   L+       +  F+N+  + +  T           K+ ++  
Sbjct: 197 GSFAQDALQEYFTEGRQVLMTKYHEEHDIVFVNHHGKPITPTGIEYVLNQIIKKSSLDSD 256

Query: 286 --AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              H +R   AT   + GA    +    G   +   + Y  
Sbjct: 257 IHPHMLRHTFATHLLNNGADLRTVQELLGHANLSTTQIYAH 297


>gi|303237489|ref|ZP_07324054.1| putative tyrosine recombinase XerC [Prevotella disiens FB035-09AN]
 gi|302482309|gb|EFL45339.1| putative tyrosine recombinase XerC [Prevotella disiens FB035-09AN]
          Length = 292

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 49/275 (17%), Positives = 99/275 (36%), Gaps = 27/275 (9%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYF---DQIIRKSGD-FDYRKITTKHIRSG---VESR 126
           I ++ K   +  + +  +   +       +Q  +K  D   +  I T  +R     +  +
Sbjct: 3   IEDFLKYLTFERNYSQRTIGEYSEDLHGFEQFYKKLDDELSWENIDTDVVRDWVEYMMDK 62

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            +T +S  + L+++R  +++A+++ +V  +P   ++ PKRK    +   + +M       
Sbjct: 63  GNTATSVNRRLSALRSFYRYALKRGFVENDPTYKLQGPKRKKPLPQFLKEAEMDTLLVPE 122

Query: 187 SEGSQ-----PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDG 240
             G+       R        +G+R S+      + +      IK T K      +     
Sbjct: 123 MWGNTYKDVLARTIILTFYSTGIRVSELVGLNNKDINIVTHEIKVTGKRNKQRIIPFGKE 182

Query: 241 F-------MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV----NKSAHGV 289
                    KL       +E  F+    +++   Q     K  A  A V     KS H +
Sbjct: 183 LEEQIDTYQKLRNDEIGEQEALFVTAKGERITTAQVRTMVK--ANLAKVSTLKKKSPHVL 240

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           R   AT   +  A    +    G +++   E YT 
Sbjct: 241 RHTFATAMLNNKAGLESVKKLLGHESIVTTEVYTH 275


>gi|260559074|ref|ZP_05831260.1| phage integrase [Enterococcus faecium C68]
 gi|260074831|gb|EEW63147.1| phage integrase [Enterococcus faecium C68]
          Length = 301

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 47/281 (16%), Positives = 98/281 (34%), Gaps = 34/281 (12%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFE---SYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127
           L++LI E          +  ++ ++E    +F   + +SGD D  K     +R  + +  
Sbjct: 11  LRYLIVE-------RGYSEKTKEAYEEDILHFKHFLEESGDADLLKAEYFTVRVYLSALA 63

Query: 128 H-----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
                 + +S  + + S+R  +++ +++E +  NP   V   K+     R + + +MQ  
Sbjct: 64  DHRSSYSRNSISRKIASLRSFYQYLLKEEVIKENPFSYVHLKKKNLRLPRFFYENEMQAL 123

Query: 183 KSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVEL 237
                       + R   E L  SG+R S+     V  +  ++   +   K        L
Sbjct: 124 FDSVAGDSPLDLRNRALLEVLYGSGIRLSECSSLSVSDIDFDSEVMLIHGKGNKERYAPL 183

Query: 238 ------------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS 285
                        +G   L+       +  F+N+  + +  T           K+ ++  
Sbjct: 184 GSFAQDALQEYFREGRQVLMTKYHEEHDIVFVNHHGKPITPTGIEYVLNQMIKKSSLDSD 243

Query: 286 --AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              H +R   AT   + GA    +    G   +   + Y  
Sbjct: 244 IHPHMLRHTFATHLLNNGADLRTVQELLGHANLSTTQIYAH 284


>gi|193069614|ref|ZP_03050567.1| integrase [Escherichia coli E110019]
 gi|192957161|gb|EDV87611.1| integrase [Escherichia coli E110019]
          Length = 256

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 46/251 (18%), Positives = 88/251 (35%), Gaps = 19/251 (7%)

Query: 96  ESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--TPSSAIQFLTSMRVLFKWAVRQEYV 153
            S    I R   D     ITTK I + +         +SA    +++   F+ A+ + ++
Sbjct: 1   MSKIRAIRRGLPDAPLEDITTKKIAAMLNGYIDEGKAASAKLIRSTLSDAFREAIAEGHI 60

Query: 154 AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG 213
             NP  +    K +    R    E ++ +++  S     RLA E  + +G R  D C   
Sbjct: 61  TTNPVAATRAAKSEVRRSRLTADEYLKIYQAAESSPCWLRLAMELAVVTGQRVGDLCEMK 120

Query: 214 VQHLQNNIFSIKTQKTGTIITVE---------LPDGFMKLLAMTPIGKETFFINNDKQKM 264
              + +    ++  KTG  I +          +            +G ET   +  ++ +
Sbjct: 121 WSDIVDGYLYVEQSKTGVKIAIPTTLHVDALGISMKETLDKCKKILGGETIIASTRREPL 180

Query: 265 NATQFSIWFKAKATKAGV-----NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
           ++   S +F      +G+       + H +R   +    +   +        G K+   A
Sbjct: 181 SSGTVSRYFMRARKASGLSFEGDPPTFHELR-SLSARLYEKQISDKFAQHLLGHKSDTMA 239

Query: 320 ETYTKGADRIR 330
             Y    DR R
Sbjct: 240 SQY--RDDRGR 248


>gi|228470279|ref|ZP_04055183.1| site-specific recombinase, phage integrase family/ribosomal subunit
           interface protein [Porphyromonas uenonis 60-3]
 gi|228308022|gb|EEK16897.1| site-specific recombinase, phage integrase family/ribosomal subunit
           interface protein [Porphyromonas uenonis 60-3]
          Length = 403

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 40/264 (15%), Positives = 100/264 (37%), Gaps = 24/264 (9%)

Query: 85  GSLAVNSRISFESYFD-----QIIRKSGDFDYRKITTKHIRSGVESRKH---TPSSAIQF 136
            + +  +  ++    +      +   + ++         +R+ +  +     + ++  + 
Sbjct: 21  RNASPLTLTTYRPAIESYMESALELATDEWRPSDADRDLVRNWIMQQMDDELSSTTVNKN 80

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS------ 190
           L+++R  +K+   + +V  NP   ++ PKR+       T+  +++  +     +      
Sbjct: 81  LSAVRSFYKYLQLRGHVTSNPTRYLKGPKREHTLPSFLTQAQIEEALATIPIETDNFLSV 140

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFMK------ 243
           + RL  E +  +GLR ++      Q +     S++    G     V       +      
Sbjct: 141 RDRLIIETIYQTGLRRAEVASLKTQQVDLTAMSLRVVGKGRKERIVPFGTDLREKMQDYI 200

Query: 244 LLAMTPIG-KETFFINNDKQKMN-ATQFSIWFKAKATKAGVNKS-AHGVRKFSATISADA 300
            L    +G  + FF+  + + ++ A  + +  KA +   G+ +  AH +R   AT   +A
Sbjct: 201 TLRDQKVGTSQYFFVTLECRPLSGADVYQVVHKALSVVPGLPRRGAHTLRHSFATEMLNA 260

Query: 301 GATAHELMATYGWKTVDQAETYTK 324
           GA    +    G   ++    YT 
Sbjct: 261 GAPITSIKELLGHSNLETTTRYTH 284


>gi|85373824|ref|YP_457886.1| integrase [Erythrobacter litoralis HTCC2594]
 gi|123099544|sp|Q2NB52|XERC_ERYLH RecName: Full=Tyrosine recombinase xerC
 gi|84786907|gb|ABC63089.1| integrase [Erythrobacter litoralis HTCC2594]
          Length = 306

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 47/276 (17%), Positives = 92/276 (33%), Gaps = 18/276 (6%)

Query: 72  KWLISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
              I E+    A     A N+  ++    +     +GD    +      R G       P
Sbjct: 5   SAAIEEFLAMLAAERGAAANTLAAYRRDLEGAEALAGDLATAR-RPALSRLGSAWSDLAP 63

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---- 186
           ++  +  +++R  + + V +     +P  ++ RP  +    +  + +++++         
Sbjct: 64  ATVARKASALRQFYGFLVDEGLREDDPSSALPRPTMRRPLPKTLSHKEVERLFEQAEREA 123

Query: 187 ----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-QNNIFSIKTQKTGTIITVELPDGF 241
                   +     E L  SGLR ++     V  + ++  F   T K G    V +    
Sbjct: 124 ETSRPLPVRLLALIELLYGSGLRATELVSLPVAAVPRDAPFLTVTGKGGVARMVPVSGRA 183

Query: 242 MKLLA---MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSAT 295
            + L            +   + K  +   +     K  A +A +N    S H +R   AT
Sbjct: 184 REALQSWMGLRGSDSPYLFPSRKAHITRVRLFQMLKELAVRADLNPDKVSPHVLRHAFAT 243

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
              + GA    L    G   +   + YT   D  RL
Sbjct: 244 HLLEGGADLRVLQTLLGHADISTTQIYTH-VDAARL 278


>gi|330994361|ref|ZP_08318288.1| Tyrosine recombinase xerC [Gluconacetobacter sp. SXCC-1]
 gi|329758556|gb|EGG75073.1| Tyrosine recombinase xerC [Gluconacetobacter sp. SXCC-1]
          Length = 388

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 62/352 (17%), Positives = 113/352 (32%), Gaps = 26/352 (7%)

Query: 19  GKIIY--YFRKGHGRRIRLPYPHESTFIPAYMS-------ALTGSTPKREYINSPRKKPT 69
           G+ +Y  ++R G   R      H S +             A   +        S  +K  
Sbjct: 37  GRKVYVIHYRSGGRLRRYTIGQHGSPWTADLARDEAIRILARVHTGENPADKRSDDRKAM 96

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKH 128
           T+      +        L   +R  +    +  I+ K G +    ++   +     S +H
Sbjct: 97  TVASFSRRFLDEYVDVHLKPRTRGEYRRSVELFIVPKFGSWRMADLSRAEVVEFHGSFRH 156

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAI--NPCLSVERPKRKTEGIRPWTKEDMQQF---- 182
            P  A + L  +  +F  A          NPC  V+R  R+    R  T ++  +     
Sbjct: 157 IPYQANRTLGVLSKMFSLADLWGIRQDGVNPCRGVKRY-REERRERFLTWDEYARLGGSL 215

Query: 183 -KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPD 239
            ++        R      L +G R  +       H+        +   KTG   TV+L  
Sbjct: 216 DEAAEDMPEAARAIRLLAL-TGCRLREIQTLQWAHVWLGEAELRLPDSKTGAK-TVQLGT 273

Query: 240 GFMKLLAMTPI-GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATIS 297
             + +L  T       + I   K     T     ++     AG++    H +R   A+ +
Sbjct: 274 AAVDVLKATRRLPDNPYVITGRKAGEYLTDLQKPWRRIRKAAGLDGVRLHDLRHSFASDA 333

Query: 298 ADAGATAHELMATYGWKTVDQAETYT--KGADRIRLGIKNSRRISSVVDSDD 347
            + GA    +    G   +     Y   K  +  R   + ++RISS +    
Sbjct: 334 LEMGADLTMIGRMLGHSDIKTTSRYAHLKRENVKRSTDQVAQRISSALTDSR 385


>gi|257095701|ref|YP_003169342.1| tyrosine recombinase XerC [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
 gi|257048225|gb|ACV37413.1| tyrosine recombinase XerC [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
          Length = 304

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 39/262 (14%), Positives = 95/262 (36%), Gaps = 22/262 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIR---SGVESRKHTPSSAIQFL 137
             L+ ++  ++    + +    G+      +  I T HIR   + + +R     S  + L
Sbjct: 21  RRLSPHTVSNYRHDLETLCALIGELPSDSGFAAIETHHIRRFVAILHTRGLGGRSLGRTL 80

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS---QPRL 194
           ++ R  ++W V++    +NP  SV  PK      +  + ++  +  +  SE     + + 
Sbjct: 81  SAWRGFYRWLVQRGMTTLNPVDSVRPPKSPKGLPKALSPDEANRLLAAQSENLLEIRDQA 140

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKT-QKTGTIITVELPDGFMKLLA------ 246
            FE    SGLR ++     +  L++ +   ++   K   +  V +     + +A      
Sbjct: 141 IFELFYSSGLRLAELAALDIGCLEDLLAGEVRVLGKRNKLRIVPVGSQAREAVALWAGQR 200

Query: 247 --MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGA 302
             +    +   F+    +++      +    +    G+      H +R   A+    +  
Sbjct: 201 ACLAAADETALFVGQRGRRLGVRMIQLRLLRRGRAQGLPARVHPHMLRHSFASHVLQSSG 260

Query: 303 TAHELMATYGWKTVDQAETYTK 324
               +    G  ++   + YT 
Sbjct: 261 DLRAVQEMLGHASIASTQVYTH 282


>gi|150388279|ref|YP_001318328.1| phage integrase domain/SAM domain-containing protein [Alkaliphilus
           metalliredigens QYMF]
 gi|150389751|ref|YP_001319800.1| phage integrase domain/SAM domain-containing protein [Alkaliphilus
           metalliredigens QYMF]
 gi|150392024|ref|YP_001322073.1| phage integrase domain/SAM domain-containing protein [Alkaliphilus
           metalliredigens QYMF]
 gi|149948141|gb|ABR46669.1| phage integrase domain protein SAM domain protein [Alkaliphilus
           metalliredigens QYMF]
 gi|149949613|gb|ABR48141.1| phage integrase domain protein SAM domain protein [Alkaliphilus
           metalliredigens QYMF]
 gi|149951886|gb|ABR50414.1| phage integrase domain protein SAM domain protein [Alkaliphilus
           metalliredigens QYMF]
          Length = 332

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 47/265 (17%), Positives = 90/265 (33%), Gaps = 14/265 (5%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP---S 131
           I  Y  S     LA+ +   +    ++        +   +TT  IR  + S   T     
Sbjct: 57  ILLYLASKKIDGLAMRTLEGYSRNLNRF-AYYMRKNVEDVTTMDIRMYLASYAKTGVKNG 115

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           +       +R  F+W   +EY+  +P   ++  K +    +  T E+M+  +       +
Sbjct: 116 TIGTETDILRGFFRWLEDEEYINKSPLRKIKSLKPEKRIRKALTNEEMEILRDGCKTY-R 174

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF----MKLLA 246
            +   EF   +G R  +        +      +K   K     TV +         K L 
Sbjct: 175 QKALLEFFYSTGCRLEEVENVKKYDIDWQRLQLKVIGKGNKERTVYINAKAKVHIQKYLM 234

Query: 247 MTPIGKETFFINNDK--QKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGA 302
                +E  F+      +K+        F      +G+ KS   H +R   AT   ++GA
Sbjct: 235 ARLDEEEALFVTERNPVKKLGRRSIEREFDKIEKTSGIKKSIYPHLIRHTMATHLLNSGA 294

Query: 303 TAHELMATYGWKTVDQAETYTKGAD 327
               + A  G +     + Y + ++
Sbjct: 295 DLGTVQAILGHEDASITQIYAQISN 319


>gi|262273209|ref|ZP_06051025.1| tyrosine recombinase XerC [Grimontia hollisae CIP 101886]
 gi|262222787|gb|EEY74096.1| tyrosine recombinase XerC [Grimontia hollisae CIP 101886]
          Length = 305

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 37/262 (14%), Positives = 83/262 (31%), Gaps = 24/262 (9%)

Query: 85  GSLAVNSRISFESYFDQIIR--------KSGDFDYRKITTKHIRSGVESRKHTPSSAIQF 136
             L+ ++  ++                 +  D D   +     ++  E  K    S    
Sbjct: 22  RGLSRHTETNYRQQLAACAEFLVGAGVSQWQDVDAAWVRQIAAQAKREQLKAG--SIALR 79

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK---SFWSEGSQPR 193
           L+++R  F + V    +A NP   V  PK+     +    +++ Q     +      + R
Sbjct: 80  LSALRSFFDFMVADGVMAANPAKGVSAPKQGRTLPKNLDVDEVNQLLSVDADDPLSVRDR 139

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLL------- 245
              E +  +GLR S+     V+ +      ++   K      V       + L       
Sbjct: 140 AMMELMYGAGLRLSELIGLNVRDVAMRKGDLRVIGKGDKERIVPFTGMAKEWLINWLKVR 199

Query: 246 -AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGA 302
             +    ++  F++   ++++             K  V  + + H +R   AT   ++  
Sbjct: 200 NQLLKGPEDALFLSKLGKRISPRSVQKRMAEWGQKQAVSSHINPHKLRHSFATHMLESSG 259

Query: 303 TAHELMATYGWKTVDQAETYTK 324
               +    G   +   + YT 
Sbjct: 260 DLRAVQELLGHADLSTTQVYTH 281


>gi|50122323|ref|YP_051490.1| site-specific tyrosine recombinase XerC [Pectobacterium
           atrosepticum SCRI1043]
 gi|49612849|emb|CAG76299.1| probable integrase/recombinase [Pectobacterium atrosepticum
           SCRI1043]
          Length = 352

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 46/309 (14%), Positives = 99/309 (32%), Gaps = 34/309 (11%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI---IRKSG 107
           +T                 TL+   + Y       + +  +   +            + G
Sbjct: 1   MTKPKAPTPEATYLSSLSQTLRQYTTAYLAHLTATNHSPRTVEGYGERLRPFVTWCEERG 60

Query: 108 DFDYRKITTKHIRSGVESRKHTPSSAI----------QFLTSMRVLFKWAVRQEYVAINP 157
                +++   + +      H    A             LTS+R+LF+W + + ++  NP
Sbjct: 61  LMQAAQVSLAALEAYQRHL-HGYRKADGKPLAQGGQLNRLTSIRMLFRWLLHRHHILYNP 119

Query: 158 CLSVERPKRKTEGI-RPWTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRA 212
              +  PK +     +  ++E+ +            G + R   E L  +GLR S+    
Sbjct: 120 AEQLTLPKAEKRLPAQILSEEETEAVMDAQDTDTLTGLRNRAVLEMLWSTGLRRSELAGL 179

Query: 213 GVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAM----------TPIGKETFFINND 260
            +  +     +  ++  K      V +    +  +            T       F+   
Sbjct: 180 MLDDVDVGRGVLVVRQGKGNKDRVVPVGLRALVWVQRYLDAVRPRLTTRHDSGYLFVTIW 239

Query: 261 KQKMNATQFSIWF-KAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVD 317
            +++     +I   +A    A + K+   H  R   AT   + GA    + A  G + ++
Sbjct: 240 GKRLGRATLTILAGRAIRNDAHLKKAGACHVFRHSMATQMLENGADTRHIQAILGHEKLE 299

Query: 318 QAETYTKGA 326
             + YT+ A
Sbjct: 300 TTQIYTRVA 308


>gi|260909719|ref|ZP_05916413.1| integrase/recombinase XerD [Prevotella sp. oral taxon 472 str.
           F0295]
 gi|260636144|gb|EEX54140.1| integrase/recombinase XerD [Prevotella sp. oral taxon 472 str.
           F0295]
          Length = 293

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 44/275 (16%), Positives = 95/275 (34%), Gaps = 28/275 (10%)

Query: 76  SEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESRKHTP 130
            ++     +  + +  +  S+            + D    +  I    IR  +ES     
Sbjct: 4   EQFLNYLQYELNRSELTIASYGDDLRAFEAFFKNKDTQLSWEAIDADIIRDWMESMMDKG 63

Query: 131 SSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            SA    + L+++R  +++ + + YV  NP   +  PKR     +   + ++ +      
Sbjct: 64  CSATTIQRRLSALRSFYRFGLTRGYVTKNPARGIVGPKRSRPLPQFLREAEIDRLLDDVP 123

Query: 188 EGS--QPRLAFEFLL---YSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241
            G   +  LA+  +L    +G+R ++        +      IK   K      +   D  
Sbjct: 124 AGDSYRELLAYTIVLTFYSTGMRLAELVGLDDDSIDFETRVIKVLGKGSKQRLIPFADEL 183

Query: 242 MKLLAMTPIGKE--------TFFINNDKQKMNATQFSIWFKAKATKAGV----NKSAHGV 289
            + L      ++         FF++   +++         +  A+ A V     +S H +
Sbjct: 184 EEGLKTYITRRDAEVTRKSKAFFVDRHGERVKRGAVQNSVR--ASLAKVTSMKKRSPHVL 241

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           R   AT   +  A    +    G +++   E YT 
Sbjct: 242 RHSFATAMLNNEAGLESVKKLLGHESLSTTEIYTH 276


>gi|227890941|ref|ZP_04008746.1| site-specific recombinase XerD [Lactobacillus salivarius ATCC
           11741]
 gi|227867350|gb|EEJ74771.1| site-specific recombinase XerD [Lactobacillus salivarius ATCC
           11741]
          Length = 298

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 39/266 (14%), Positives = 89/266 (33%), Gaps = 27/266 (10%)

Query: 85  GSLAVNSRISF----ESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT--PSSAIQFLT 138
              +  +  ++    + + D I    G   +++I +  + + +         +S  + ++
Sbjct: 17  KQYSDETLKAYSEDLQHFVDFIDETGGAKSFKEIGSNDVHAYMSYLYDRYEMTSISRMIS 76

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRL 194
           S+R  + + ++ E    NP   V+  +      R + +++M          +    + R 
Sbjct: 77  SLRAFYNFLIKNELTDENPFAYVQLKRHPRSLPRFFYEKEMTALFEATEGDTQMLIRDRA 136

Query: 195 AFEFLLYSGLRCSDS--CRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM----- 247
             E L  +G+R S+    +     L N    +   K      V       + L       
Sbjct: 137 LLESLYGTGMRVSECTGLKMESVDLTNKKMLLH-GKGDKDRLVPFGSYCQEALQRYFEQT 195

Query: 248 -TP------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISA 298
            TP         +  F+N+    +     +   K    ++ ++ S   H +R   AT   
Sbjct: 196 RTPLMEKYHRDHDLVFVNHYGNPLTPAGVAYILKQIVKRSSLHTSIHPHELRHTFATHLM 255

Query: 299 DAGATAHELMATYGWKTVDQAETYTK 324
             GA    +    G  ++   + YT 
Sbjct: 256 SNGADLRAVQELLGHSSLSTTQIYTH 281


>gi|91791760|ref|YP_561411.1| tyrosine recombinase XerC [Shewanella denitrificans OS217]
 gi|91713762|gb|ABE53688.1| Tyrosine recombinase XerC [Shewanella denitrificans OS217]
          Length = 321

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 31/229 (13%), Positives = 74/229 (32%), Gaps = 14/229 (6%)

Query: 109 FDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168
                   + + + +  +  +P S    L++++  F++ + ++ +  NP   +  PK+  
Sbjct: 68  LALSHEALQALLAKLHRQGLSPRSLSLCLSALKQFFEYLLAEDCITHNPAKGLSAPKQAK 127

Query: 169 EGIRPWTKEDMQQFKSFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225
              +    + +    +         + R   E    SGLR  +        +   +  +K
Sbjct: 128 PLPKNIDVDAISHLLAIDGDDPLVIRDRAIMELFYSSGLRLGELASLNYGDIHLGLQEVK 187

Query: 226 T-QKTGTIITVELPDGFMKLLAMTPIGK--------ETFFINNDKQKMNATQFSIWFKAK 276
              K G    V +    M+ LA+    +           F++N  ++++           
Sbjct: 188 VLGKGGKERRVPVGKLAMEALALWHTQRLLLVQADEPALFVSNQGKRLSHRSIQARMAKW 247

Query: 277 AT--KAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
                  V    H +R   AT   ++      +    G   +   + YT
Sbjct: 248 GQNQALSVPVHPHKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYT 296


>gi|14010726|ref|NP_114212.1| hypothetical protein pFKN_p22 [Pseudomonas syringae pv. maculicola
           str. M6]
 gi|13926143|gb|AAK49554.1|AF359557_19 unknown [Pseudomonas syringae pv. maculicola str. M6]
          Length = 320

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 52/277 (18%), Positives = 102/277 (36%), Gaps = 32/277 (11%)

Query: 84  WGSLA-VNSRISFESYFDQIIRKSGDF---DYRKITTKHI---RSGVESRKHTPSSAIQF 136
           + +L    +R ++++  +      G     ++R +T  H+   R+ +E R    ++  + 
Sbjct: 33  FANLDNPRTRRAYQNDLEDFCSFVGLASADEFRVVTRSHVLAWRAQLEHRGLAGATIRRK 92

Query: 137 LTSMRVLFKWAVRQE-YVAINPCLSVERPKRKT-EGIRPWTKED-----MQQFKSFWSEG 189
           L ++  LF   +        NP   V+RP+ ++ EG  P   +      ++       +G
Sbjct: 93  LAALASLFDHLLENNAIAGGNPVHGVKRPRIESNEGKTPALGDHQAKALLEAPDETTLKG 152

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKT-QKTGTIITVELPDG------ 240
            + R     LLY GLR  ++    V  +  +  I  +K   K G +  + L         
Sbjct: 153 QRDRALLAVLLYHGLRREEAALLQVSDIQERRGIQHLKVHGKGGKVRYLPLHPIAAGRIH 212

Query: 241 --FMKLLAMTPIGKETFFINNDKQ----KMNATQFSIWFKAKATKAGV---NKSAHGVRK 291
                        K   F+    +     + A        A A KAG+       HG+R 
Sbjct: 213 QYLENSEHHLAERKVPLFMPLRGKLTGAGITANGIYAVVTAYAKKAGIEVDGLGVHGLRA 272

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
            +AT + +  A   ++ A  G   +   + Y +  +R
Sbjct: 273 TAATNALEHEADIAKVQAWLGHANISTTKIYDRRENR 309


>gi|21232926|ref|NP_638843.1| site-specific tyrosine recombinase XerC [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66767001|ref|YP_241763.1| site-specific tyrosine recombinase XerC [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|188990094|ref|YP_001902104.1| site-specific tyrosine recombinase XerC [Xanthomonas campestris pv.
           campestris str. B100]
 gi|34222915|sp|Q8P550|XERC_XANCP RecName: Full=Tyrosine recombinase xerC
 gi|81307012|sp|Q4UYY0|XERC_XANC8 RecName: Full=Tyrosine recombinase xerC
 gi|254799362|sp|B0RNK3|XERC_XANCB RecName: Full=Tyrosine recombinase xerC
 gi|21114762|gb|AAM42767.1| site-specific recombinase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66572333|gb|AAY47743.1| site-specific recombinase [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|167731854|emb|CAP50038.1| site-specific tyrosine recombinase [Xanthomonas campestris pv.
           campestris]
          Length = 322

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 40/257 (15%), Positives = 86/257 (33%), Gaps = 17/257 (6%)

Query: 85  GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLT 138
             ++ ++  ++      +I      G  D  ++ +  +R  V     R  +P S  + L+
Sbjct: 42  RQVSAHTLDAYRRDLAALIGWASAQGSEDVAQLDSAQLRKFVTAEHRRGLSPKSLQRRLS 101

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WSEGSQPRLA 195
           + R  + W ++   +A +P  ++  PK   +  +    ++  +          G + R  
Sbjct: 102 ACRSYYAWLLKHGRIATSPAAALRAPKAPRKLPQVLDADEAVRLVEVPTDAPLGLRDRAL 161

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKE- 253
            E    SGLR S+ C    + L  +   +    K G    V +    +  L         
Sbjct: 162 LELFYSSGLRLSELCALRWRDLDLDSGLVTVLGKGGKQRLVPVGSHAVAALRAWQRDSGG 221

Query: 254 ----TFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHEL 307
                 F       ++     I  K  A + G+  +   H +R   A+   ++      +
Sbjct: 222 SAQTHVFPGRAGGAISQRAVQIRIKQLAVRQGMFKHVHPHMLRHSFASHILESSGDLRGV 281

Query: 308 MATYGWKTVDQAETYTK 324
               G   +   + YT 
Sbjct: 282 QELLGHSDIATTQIYTH 298


>gi|227549015|ref|ZP_03979064.1| site-specific tyrosine recombinase XerC [Corynebacterium
           lipophiloflavum DSM 44291]
 gi|227078925|gb|EEI16888.1| site-specific tyrosine recombinase XerC [Corynebacterium
           lipophiloflavum DSM 44291]
          Length = 298

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 42/282 (14%), Positives = 101/282 (35%), Gaps = 24/282 (8%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE---SR 126
           L   I ++ + A      +  +  ++ S    ++  +    + ++T   +R+ +    SR
Sbjct: 9   LGEAIEDFAEHAELVLGRSPATVKAYRSDLATLLPFA--TTFAELTLPTLRAWLADAVSR 66

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE------DMQ 180
               S+  +  +++R    WA  Q Y+  +P   +  PK           E      + +
Sbjct: 67  GLARSTLARRTSAVRAFSTWACNQGYLQSDPAARLLSPKVNRHLPTVVEAEAAGELVEAE 126

Query: 181 QFKSFWSEGS-QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---- 235
                    + + R   E L  +G+R ++     +  +     ++K    G    +    
Sbjct: 127 INDDDHPAETLRDRAMLELLYATGMRVAELSALDIGDVDLGRGAVKVTGKGDKQRIVPFG 186

Query: 236 -ELPDGFMKLLAM----TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGV 289
               D   + ++          +  F+ +  ++++  Q     +  A + G  + S H +
Sbjct: 187 GAASDAVQRWVSAGRGELAGDTDALFVGSRGKRIDQRQVRRIVERAAVRTGAGEISPHSL 246

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330
           R  +AT   + GA    +    G  ++   + YT   A R++
Sbjct: 247 RHSAATHMIEGGADLRVVQEMLGHSSLQTTQIYTHVSAQRLK 288


>gi|212635507|ref|YP_002312032.1| Phage integrase:Phage integrase,SAM-like protein [Shewanella
           piezotolerans WP3]
 gi|212556991|gb|ACJ29445.1| Phage integrase:Phage integrase,SAM-like protein [Shewanella
           piezotolerans WP3]
          Length = 317

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 53/319 (16%), Positives = 101/319 (31%), Gaps = 38/319 (11%)

Query: 35  LPYPHESTFIP--AYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSR 92
           +  P    F P   Y   L     K +  ++ R K   LK  I        W       +
Sbjct: 1   MDKPTTKHFWPCVEYYLEL--CLAKGQSSDTVRNKRGGLKKFII-------WC------Q 45

Query: 93  ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEY 152
               S  D I     D     + +   R  +++    P+     LT ++   K+  R+  
Sbjct: 46  ERNISTIDHINLDLMDDYAAYLNS--YRKKLDNEPLGPAQKRNLLTYVKTFVKYMHRKGL 103

Query: 153 VAINPCLSVERPKRKTEGIRPW-TKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCS 207
           ++ N    +E P +  +  +   + E+++            G + R   E    +G+R  
Sbjct: 104 LSKNTLSDIELPSKGHQIPKALYSVEEIEVILEQPLLFGIKGLRDRATLEIFFATGIRRG 163

Query: 208 DSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLA----------MTPIGKETFF 256
           +  +  V  +           K      V +     + LA                +  F
Sbjct: 164 ELVKLNVDDIDFTGKMVCVHGKGKKERLVPISQRGCEWLAFYTGKIRPRFAFISSGKALF 223

Query: 257 INNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWK 314
           + N+ ++    + S         AG +++   H  R  +AT   D GA    +    G  
Sbjct: 224 LANNGKRYVPGKLSDMASQYVKLAGFDRTGACHLFRHNTATTMLDNGADLRHIQEMLGHA 283

Query: 315 TVDQAETYTKGADRIRLGI 333
           ++   + YT    R +L  
Sbjct: 284 SILTTQLYTH-VSRKKLSE 301


>gi|189183843|ref|YP_001937628.1| putative integrase [Orientia tsutsugamushi str. Ikeda]
 gi|189180614|dbj|BAG40394.1| putative integrase [Orientia tsutsugamushi str. Ikeda]
          Length = 213

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 42/190 (22%), Positives = 77/190 (40%), Gaps = 10/190 (5%)

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP--RLAFEFLL 200
           +F  A++ E +  NP L +++ K +    R  + ++M +F       +    R      L
Sbjct: 1   MFNKAIKWELMDRNPTLRIDKHKMQARERR-LSYDEMTKFLQVLCREASVLIRDFALLAL 59

Query: 201 YSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTP-IGKETFFI 257
           Y+G R  +       ++     I+ I   K G    + L D  +++L       K  + +
Sbjct: 60  YTGARKRNVLEMEWDNIDFVRKIWHIPKTKNGKAQNIPLTDEIIEILQARKLTSKSKWVL 119

Query: 258 NNDKQKMN--ATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWK 314
           + D+ K       +  W+K    KAG+ N   H +R+  A+  AD GA  + + A     
Sbjct: 120 STDRSKSVHLENPYRGWYK-ICKKAGIKNLRIHDLRRTFASCMADEGAGQYIISAALNHS 178

Query: 315 TVDQAETYTK 324
            +     YTK
Sbjct: 179 DIKSTSIYTK 188


>gi|150389215|ref|YP_001319264.1| phage integrase family protein [Alkaliphilus metalliredigens QYMF]
 gi|149949077|gb|ABR47605.1| phage integrase family protein [Alkaliphilus metalliredigens QYMF]
          Length = 354

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 34/262 (12%), Positives = 94/262 (35%), Gaps = 18/262 (6%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES----RKHTP 130
           + +  K       +  ++ S+  +  + +    +     +T + +   +      ++++ 
Sbjct: 81  LQQLEKQFTLKGYSPKTKKSYIGHVKRFLGFINNKP-EVLTKQDVEKYMYHLLNVQENSH 139

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           + A Q L++++  ++ +++++ V  +    + RPK++       ++ ++       +   
Sbjct: 140 AFANQALSAIKFYYQHSLKKDKVLYD----LPRPKKEKTLPNILSQREVLSILDSVN-NI 194

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLLAMT 248
           + +        +GLR  +  R  V  + ++     ++  K        L +  +  L   
Sbjct: 195 KHKSILLLTYSAGLRIGEVVRLKVGDIDSDRMLIHVRQGKGRKDRYTILSEVALSTLRKY 254

Query: 249 P-IGKETFFINNDKQK---MNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302
             I K   ++    ++   +        F     +A V K  S H +R   AT   + G 
Sbjct: 255 AMIEKPKDWLFPGGKENCFLTERSVQKIFSVACKRAKVKKHASVHSLRHSFATHLLEGGT 314

Query: 303 TAHELMATYGWKTVDQAETYTK 324
               +    G  +    E YT 
Sbjct: 315 DLRYIQELLGHSSSKTTEIYTH 336


>gi|222095006|ref|YP_002529066.1| DNA integration/recombination/invertion protein [Bacillus cereus
           Q1]
 gi|221239064|gb|ACM11774.1| DNA integration/recombination/invertion protein [Bacillus cereus
           Q1]
          Length = 370

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 50/286 (17%), Positives = 96/286 (33%), Gaps = 39/286 (13%)

Query: 77  EYRKS---AHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH---T 129
           EY +S       S+ + +    + Y   +II   G+    K+T+ H+++ V S +     
Sbjct: 69  EYLESWFNTKRHSVGIQTAKVLKGYLTSRIIPSLGNIKLAKLTSLHMQNYVNSLRDEGLK 128

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
             +  + +  +R   + A+  E +  N  +  + PK   E +  WT+E++Q F     + 
Sbjct: 129 RGTIEKIIKIIRNSLEHAIDLELITKNVAVKTKLPKGDKEELTVWTEEEVQLFLKAAQD- 187

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--------------TQKTGTIITV 235
           S+  + F   L +G+R  +      + +      +                 KT + +  
Sbjct: 188 SRYSIVFHMALVTGMRQGELLGLRWKDVDLEKGHLTISQTLSHDGKTFLLGGKTKSSLRK 247

Query: 236 ELPDG-----FMKLLAMTPIGK----------ETFFINNDKQKMNATQFSIWFKAKATKA 280
            L          K  A+    K          +          +N         A   KA
Sbjct: 248 ILLPASTIAKLKKHRAVVLKEKLSQGEEYQDNDLVMCTPSGTPINPANVRRSLNALIQKA 307

Query: 281 GVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
            V K   H +R   AT+    G     +    G   +    +TY+ 
Sbjct: 308 AVPKIRFHDLRHTHATMLLAKGVNVKVIFERLGHSNIKITLDTYSH 353


>gi|148977143|ref|ZP_01813783.1| site-specific recombinase, phage integrase family protein
           [Vibrionales bacterium SWAT-3]
 gi|145963612|gb|EDK28874.1| site-specific recombinase, phage integrase family protein
           [Vibrionales bacterium SWAT-3]
          Length = 375

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 65/319 (20%), Positives = 112/319 (35%), Gaps = 18/319 (5%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP---TTLKWLI 75
           G+ +++ R  H    R      S    +   A   +    + + SP+ +     TL+   
Sbjct: 39  GRRVFFVRFQHNGLRRNHK-LGSALDYSLRQARREALQVVQQVRSPKMETLPSITLQAFG 97

Query: 76  SEYRKSAHWGS-LAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
            E+ K   +      N+    ES F  QI    GD + + I    +        H   SA
Sbjct: 98  QEFFK--RYPRHWKPNTLKKNESAFRLQIAPYLGDREVQSIVRSDVEQWFTQLSHVKGSA 155

Query: 134 IQFLTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS--EG 189
            Q L  + V+ +     EY     NPC   +R K   E  R  +K++++Q        EG
Sbjct: 156 NQALVLLSVMMQQCEAWEYRPKNTNPCRGFKRYK-AGEVERYLSKDELRQLWRVLDTLEG 214

Query: 190 SQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
             P   +    L+Y+G R S+      +  +   + +   KTG   TV L       L  
Sbjct: 215 DNPAKVMIIRLLIYTGCRSSEVRTLQWKEYRGGHWHLLDSKTGAK-TVYLCSQVRAYLDA 273

Query: 248 TPIGKETFFIN-NDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAH 305
                   F    + + ++  Q  I+++     AG+     H +R   A+I+  +     
Sbjct: 274 WQSESHYLFPAPCNTKPISTNQLGIFWRQARQLAGLEGVRLHDLRHTYASIAIQSKVNLI 333

Query: 306 ELMATYGWKTVDQAETYTK 324
            L    G    +    Y  
Sbjct: 334 VLSRLLGHAEAETTLKYAH 352


>gi|331266258|ref|YP_004325888.1| integrase/recombinase, phage integrase family protein
           [Streptococcus oralis Uo5]
 gi|326682930|emb|CBZ00547.1| integrase/recombinase, phage integrase family protein
           [Streptococcus oralis Uo5]
          Length = 321

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 39/294 (13%), Positives = 96/294 (32%), Gaps = 14/294 (4%)

Query: 42  TFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ 101
            F+          + +R  ++  +K+  +   L+  +  +      +  +   ++   + 
Sbjct: 14  PFLNNEQLLALRESLERHLVDGKKKQKHSNNNLLQLFITAKQVEGCSAKTIRYYQRTIEN 73

Query: 102 IIRKSGDFDYRKITTKHIRSGVESRKH----TPSSAIQFLTSMRVLFKWAVRQEYVAINP 157
           +          ++TT  +RS + + +     + ++       +   F W  ++EY+  NP
Sbjct: 74  LFHHI-KESVTQLTTDDLRSYLANYQSEKDCSKANLDNIRRILSSFFAWLEQEEYIIKNP 132

Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217
              +++ K +      +T E ++  +    E  +     + L  +G+R  +  +     +
Sbjct: 133 IRRIKKIKTEQTVKETYTDEHLEIMRDNC-ENLRDLAMIDLLASTGMRVGELVQLNRSDI 191

Query: 218 Q-NNIFSIKTQKTGTIITVELPDG----FMKLLAMTPIGKETFFINNDKQ--KMNATQFS 270
              N   +   K      V             L          F+    +  ++      
Sbjct: 192 DFENRECVVFGKGKKERPVYFDARTKIHLRNYLNDRKDSHPALFVTLLGKAQRLGIAGVE 251

Query: 271 IWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           I  +    K G+ K   H  R+  AT + D G    ++    G   +D    Y 
Sbjct: 252 IRLRKLGQKLGIQKVHPHKFRRTLATKAIDKGMPIEQVQKLLGHSKIDTTLAYA 305


>gi|293570278|ref|ZP_06681347.1| tyrosine recombinase XerC [Enterococcus faecium E980]
 gi|291609685|gb|EFF38946.1| tyrosine recombinase XerC [Enterococcus faecium E980]
          Length = 301

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 47/283 (16%), Positives = 100/283 (35%), Gaps = 38/283 (13%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFE---SYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127
           L++LI E          +  ++ ++E    +F   + +SGD D  K     +R  + +  
Sbjct: 11  LRYLIVE-------RGYSEKTKEAYEEDILHFKHFLEESGDADLLKAEYFTVRVYLSALA 63

Query: 128 H-----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
                 + +S  + + S+R  +++ +++E +  NP   V   K+     R + + +MQ  
Sbjct: 64  DHRPSYSRNSISRKIASLRSFYQYLLKEEVIKENPFSYVHLKKKNLRLPRFFYENEMQAL 123

Query: 183 KSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVEL 237
                       + R   E L  SG+R S+     V  +  ++   +   K        L
Sbjct: 124 FDSVAGDSPLDLRNRALLEVLYGSGIRLSECSNLLVSDIDFDSEVMLIHGKGNKERYAPL 183

Query: 238 ------------PDGFMKLLAMTPIGKETFFINNDKQKMNATQ----FSIWFKAKATKAG 281
                        +G   L+       +  F+N+  + +  T      +   K  +  + 
Sbjct: 184 GSFAQDALQEYFTEGRQVLMTKYHEEHDIVFVNHHGKPITPTGIEYVLNQMIKKSSLDSD 243

Query: 282 VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           ++   H +R   AT   + GA    +    G   +   + Y  
Sbjct: 244 IH--PHMLRHTFATHLLNNGADLRTVQELLGHANLSTTQIYAH 284


>gi|254282053|ref|ZP_04957021.1| tyrosine recombinase XerC [gamma proteobacterium NOR51-B]
 gi|219678256|gb|EED34605.1| tyrosine recombinase XerC [gamma proteobacterium NOR51-B]
          Length = 304

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 49/278 (17%), Positives = 98/278 (35%), Gaps = 23/278 (8%)

Query: 70  TLKWLISEYRKS-AHWGSLAVNSRISFES---YFDQIIRKSGDFDYRKITTKHIRSG--- 122
           +L   IS++         ++ ++  ++     +F++  R S     R I    +RS    
Sbjct: 4   SLGASISDFLDYQRDVRRMSHHTVSNYRRDLNHFEEFCRASNCTSPRDIKESVVRSWAGQ 63

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           ++ +   P++  + L+S+R  FK    +     NP + +  P+R  +  +    + +   
Sbjct: 64  MQRQGKAPATIQRGLSSVRSYFKHLAARHADISNPAIGIRAPRRPRKLPKTIEADRIGAL 123

Query: 183 KSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-----TIIT 234
               +E +   + +   E L  SGLR ++     ++ L      I     G       + 
Sbjct: 124 FQRPAESTLEKRDQAIAELLYSSGLRLAELVDVNLEDLDRREGVITVTGKGDKTRTVPVG 183

Query: 235 VELPDGFMKLLAMTPIGKETF------FINNDKQKMNATQFSIWFKAKATK--AGVNKSA 286
           V         +A  PIG+E        F+N    ++         K  A     G N   
Sbjct: 184 VAALKALEAWIACRPIGQEVLSAKAPLFVNQRGTRLGQRSVQDRLKKLAKATHLGQNLHP 243

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           H +R   AT   ++      +    G   +   + YT 
Sbjct: 244 HMLRHSFATHLLESSGDLRAVQELLGHANISTTQIYTH 281


>gi|306780830|ref|ZP_07419167.1| integrase [Mycobacterium tuberculosis SUMu002]
 gi|306790052|ref|ZP_07428374.1| integrase [Mycobacterium tuberculosis SUMu004]
 gi|306794135|ref|ZP_07432437.1| integrase [Mycobacterium tuberculosis SUMu005]
 gi|308326334|gb|EFP15185.1| integrase [Mycobacterium tuberculosis SUMu002]
 gi|308333494|gb|EFP22345.1| integrase [Mycobacterium tuberculosis SUMu004]
 gi|308337528|gb|EFP26379.1| integrase [Mycobacterium tuberculosis SUMu005]
          Length = 332

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 47/285 (16%), Positives = 95/285 (33%), Gaps = 10/285 (3%)

Query: 44  IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII 103
           + A+++A   S  K          P + +  I +Y  + +       +    ++      
Sbjct: 46  VEAFLAA-AKSQNKPPGPPPSLHAPPSWRRDIDDYLLNLNAAGQRPATIRLRKTVLCAAA 104

Query: 104 RKSGDFDYRKITTKHIRSGVESRKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162
              G      +T +H+   +  ++H +P     + +++R  F WA   + V      S+ 
Sbjct: 105 HGLG-RPPADVTAEHLLDWLGKQQHLSPEGRKTYRSTLRGFFVWAYEMDRVRDYVADSLP 163

Query: 163 RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222
           + +   +  RP   +  Q   +      +  L       +GLR +++ +A    L +   
Sbjct: 164 KVRCPKQPPRPAGDDVWQAALAKADR--RIELMIRLAGEAGLRRAEAAQAHTGDLMDGGL 221

Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
            +   K G    V + D    L+  TP G    F N     + A                
Sbjct: 222 LLVHGKDGKRRIVPISDYLAALIRDTPHG--YLFPNGTGGHLTAEHVGKLVSRALPG--- 276

Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           + + H +R   AT +         +    G  ++   E YT   D
Sbjct: 277 DATMHTLRHRYATRAYRGSHNLRAVQQLLGHASIVTTERYTALCD 321


>gi|302387673|ref|YP_003823495.1| integrase family protein [Clostridium saccharolyticum WM1]
 gi|302198301|gb|ADL05872.1| integrase family protein [Clostridium saccharolyticum WM1]
          Length = 339

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 43/268 (16%), Positives = 87/268 (32%), Gaps = 21/268 (7%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRS-GVESRKHTPS 131
           +  +  S    +   N+   + +   +++   G    D   +  ++      E      +
Sbjct: 57  VKMFVASKKAVNRQENTLKQYTTEICKMLDFLGKRIEDITAMDLRYYYGVMREQHGIKMT 116

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           +    L  +   + +   +E V  NP   V   K      +P+++E+M+  +   +   +
Sbjct: 117 TMQTRLHYLSSFWDFLTTEELVTSNPVKRVGILKLAKTIKKPFSQEEMEALRVNCTV-LR 175

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPI 250
            R   EFL  +G+R S+     V  ++     +    K      V L D     L     
Sbjct: 176 DRALMEFLYSTGVRVSELALLNVCDIEMGRQELIVFGKGSKERKVYLTDNARFYLKRYLK 235

Query: 251 GKE-------------TFFINNDKQK--MNATQFSIWFKAKATKAGVNK-SAHGVRKFSA 294
            +                F   D+    +        F+    +AGV K   H  R+  A
Sbjct: 236 ERMKEEGITEEELENKPLFATLDQPHARLTVAGIQYMFRQLGRRAGVKKVHPHRFRRTIA 295

Query: 295 TISADAGATAHELMATYGWKTVDQAETY 322
           T   + G    ++    G + +D    Y
Sbjct: 296 TDLLNRGMPVEQVSKLLGHEKLDTTMIY 323


>gi|269213747|ref|ZP_05982773.2| tyrosine recombinase XerC [Neisseria cinerea ATCC 14685]
 gi|269145670|gb|EEZ72088.1| tyrosine recombinase XerC [Neisseria cinerea ATCC 14685]
          Length = 329

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 38/274 (13%), Positives = 89/274 (32%), Gaps = 20/274 (7%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI---TTKHIRSGVES-- 125
           L   +  Y ++      + ++  ++     +++    +         T       +    
Sbjct: 34  LAAYLDAYLENIVREGKSEHTVAAYRRDLQELLALLEEMPSANPPNCTRGDFVQALRRLS 93

Query: 126 -RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
            R     +  + L+S R    W V++  +  +P   ++ PK+     +   +E + Q   
Sbjct: 94  GRGLGERTLARKLSSWRQYCVWLVKRGLMHADPTADIKPPKQPERIPKALPQECLNQMLD 153

Query: 185 F-----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELP 238
                  +   +    FE +  SGLR S+        +  +   ++    G     V L 
Sbjct: 154 LPVDDGDALALRDHALFELMYGSGLRLSEIHGLDTGDVWLDEGWVRVTGKGRKQRQVPLT 213

Query: 239 ----DGFMKLL--AMTPIGKETFFINNDKQKMNATQFSIWFKAKATK--AGVNKSAHGVR 290
               +     L    T    +  F   +  +++  Q     ++ A +   G + S H +R
Sbjct: 214 GKSVEALKNYLPLRQTASDGKALFTGRNGTRLSQRQIQKRLESWAAQNGDGRHISPHMMR 273

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              A+    +      +    G  ++   + YTK
Sbjct: 274 HSYASHLLQSSRDIRAVQELLGHSSLSTTQIYTK 307


>gi|229815416|ref|ZP_04445748.1| hypothetical protein COLINT_02464 [Collinsella intestinalis DSM
           13280]
 gi|229808949|gb|EEP44719.1| hypothetical protein COLINT_02464 [Collinsella intestinalis DSM
           13280]
          Length = 308

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 41/278 (14%), Positives = 86/278 (30%), Gaps = 30/278 (10%)

Query: 86  SLAVNSRISFESYFDQIIR-----KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSM 140
            L+  +  ++  + +              D      +   +         ++    L+++
Sbjct: 26  GLSPETVRAYGQHLEAYADWCESHAVDGLDPSSRDLRSYLAEFRRDGRASTTVAAHLSAL 85

Query: 141 RVLFKWAVRQEY-VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195
           R  F+W     +     P  +V  PK++ E     T E++             G +    
Sbjct: 86  RSFFRWLEYSGHRAGAVPLATV-APKQRRELPHVLTAEELAALFDAPDLSCPVGLRDAAM 144

Query: 196 FEFLLYSGLRCSDSCRAGVQHL-QNNIFSIKTQKTGTIITVEL---------------PD 239
            E  + +G R S+  R  +  +           K      V L                 
Sbjct: 145 LELFIATGARISELSRLELGDVCVAERQVCLLGKGSKERIVPLYARAIEVYERYLENGRP 204

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS 297
             ++  A+        F+++  + MN+      F     KAG+  + + H +R   AT  
Sbjct: 205 NLLRAPALGGDACRAVFVSDRGRAMNSDALRYRFDVLKRKAGISSDITPHAMRHTFATEL 264

Query: 298 ADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIK 334
              GA    +    G  ++   + YT    DR++  + 
Sbjct: 265 LGGGADLRSVQELLGHASLSTTQIYTHLTPDRLKSAVA 302


>gi|153932007|ref|YP_001385123.1| phage integrase family site specific recombinase [Clostridium
           botulinum A str. ATCC 19397]
 gi|153935500|ref|YP_001388592.1| phage integrase family site specific recombinase [Clostridium
           botulinum A str. Hall]
 gi|152928051|gb|ABS33551.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum A str. ATCC 19397]
 gi|152931414|gb|ABS36913.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum A str. Hall]
          Length = 379

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 46/373 (12%), Positives = 123/373 (32%), Gaps = 47/373 (12%)

Query: 15  RTRHGKIIYYFRKG--HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           R R     YYF  G   G+R ++     ST   A  +            +   +   ++ 
Sbjct: 6   RKRGSSWYYYFDAGTVEGKRKKIERKGGSTKKEAETALRNALNEFENCGSLLDESNISIS 65

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
                + K     +   N++++++   +  I    G +  + +T   ++  +  +K+   
Sbjct: 66  DYFDYWHKEYALINCKYNTQVNYKKIIENHIKPNLGVYKLKSLTPAILQEFLN-KKYRNG 124

Query: 132 SAIQFLTSMRVLFKWAVRQ-----EYVAINPCLSVERPK-----RKTEGIRPWTKEDMQQ 181
            A   L++   +   A++      + +  NP   V  PK        + ++  + E+ ++
Sbjct: 125 FAKNTLSNFYGVLSGALKMAVYPYKLIKENPMTYVTMPKYNQINNDKDDLKILSLENFKE 184

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----------------NNIFSIK 225
             + + EGS   +  +    +G+R ++ C      +                        
Sbjct: 185 IINRFPEGSNFYIPLQIAFNTGMRAAEVCGLTWDCINLKNNTITIKKIIIYKNKEWIFGT 244

Query: 226 TQKTGTIITVELPDGFMKLLAMTP--------------IGKETFFINNDKQKMNATQFSI 271
            +   +  T+ + +  + +L                            + + +       
Sbjct: 245 PKTKSSYRTIPIGNTLVNILKHHKKHQIKNKLKYGKHYTSSNFVCTKENGELVTTNSLKY 304

Query: 272 WFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIR 330
             +    +  +  + H +R   AT+  +AGA   ++    G   +    +TY+   + ++
Sbjct: 305 LSRVVNYELQIPFNFHSLRHTHATMLLEAGANIKDIQQRLGHSKISTTMDTYSHVTNTLK 364

Query: 331 LGIKNSRRISSVV 343
           L   +  R  +++
Sbjct: 365 L--DSVNRFETII 375


>gi|251772576|gb|EES53141.1| putative phage integrase [Leptospirillum ferrodiazotrophum]
          Length = 367

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 51/326 (15%), Positives = 108/326 (33%), Gaps = 20/326 (6%)

Query: 12  TKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
            +E      + +   +  G+RIR     ++     Y    T +   R      ++   T+
Sbjct: 11  IREIPPGSGVWWVDLRHEGKRIRRKVGPKTAAKAVYERLKTEAREGRLVPREKKRIFPTV 70

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS----GVESRK 127
           + +++E          +    ++ + Y    I K G+     +T   +R       +SR 
Sbjct: 71  REVVTE-----RASRFSGRQGVNEKRYASWWIEKIGEKRTNDLTPSDLRKILNEARDSRD 125

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            +P +   F   +R     A+R   +  +P             +R  T+ +  + +   +
Sbjct: 126 LSPQTINHFFGHLRAALNEALRDGKIDHSPMQGFSLLPTPRGRLRFLTEGEELRLREVMT 185

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLL 245
                 + F  L  +GLR  +        +   N + +I   K G    V L D  +++L
Sbjct: 186 PADFRLVRFAIL--TGLRREEQFSLTWSDIDLQNRVLTIPRSKHGGTRHVPLSDEAVEIL 243

Query: 246 AMTPIGKETF--FINNDKQKMNATQFSIWFKA----KATKAGV-NKSAHGVRKFSATISA 298
                 +     +    +          +++        KAG+ +   H +R   A+   
Sbjct: 244 KAIRTERRVVSAWCFPSQNPATHIDPQNFYRRVYLPALEKAGIKDVIWHTLRHTCASRLV 303

Query: 299 DAGATAHELMATYGWKTVDQAETYTK 324
            AG     +    G KT+     Y+ 
Sbjct: 304 MAGVDIRTVQEILGHKTLAMTTRYSH 329


>gi|269978219|ref|ZP_06185169.1| tyrosine recombinase XerD [Mobiluncus mulieris 28-1]
 gi|269933728|gb|EEZ90312.1| tyrosine recombinase XerD [Mobiluncus mulieris 28-1]
          Length = 319

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 45/284 (15%), Positives = 92/284 (32%), Gaps = 32/284 (11%)

Query: 85  GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHTPSS--------A 133
              + ++  +++    + +      G     ++T   +   V +     +S         
Sbjct: 28  RGASPHTIAAYQRDLQRYVAYLQILGRDTLAQVTEVDLEGFVRALGDGFASFPPLGSTSV 87

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG---- 189
            + L + R   ++      +  N   SV+  K           E+M+   +  S      
Sbjct: 88  RRCLAAARSWHRYLFDSGSLGANVASSVKPAKLPRRLPETLNLEEMEALLAAASSPGDSN 147

Query: 190 -SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELP-----DGF 241
             + R   EFL  SG R S++    +  +        ++    G    + +         
Sbjct: 148 SLRDRALLEFLYASGARISEAMNLVLDDIDFETEPALVRLFGKGRKERISMLGRQACQAL 207

Query: 242 MKLL-AMTPIGKE------TFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292
              L  + P   E        F+N   + M+        +A A +A +++    H +R  
Sbjct: 208 QAYLVRVRPTLAEKGQSIGRVFLNTYGKPMSRQTAWAIIQAAAKRAQIDRPVHPHTLRHC 267

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
            AT     GA    +    G  +V   E YTK + ++ L +  S
Sbjct: 268 FATHLLQGGADIRVVQELLGHASVTTTEIYTKVSKQMLLEVYAS 311


>gi|167465690|ref|ZP_02330779.1| phage integrase family protein [Paenibacillus larvae subsp. larvae
           BRL-230010]
          Length = 301

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 42/261 (16%), Positives = 86/261 (32%), Gaps = 22/261 (8%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRKIT-------------TKHIRSGVESRKHTPSS 132
            L   +   + S     I      +Y++               T++  +  +  +  P++
Sbjct: 27  DLNPKTLKEYASDLKHFIGWFETANYQEENIVFRIEDVATPTLTRYQEASQKVMELKPAT 86

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG--S 190
             + L +++  F+WA     +  +P   V+    +    R  T ++     +    G   
Sbjct: 87  INRRLITLKRFFEWAASNSIIRRDPSKPVKLVPEEKVSPRQMTDKEEDALIAAAEHGGSL 146

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP----DGFMKLLA 246
           + +     +L++GLR  + C      +Q    ++++ K      V L         K L 
Sbjct: 147 RDQTILIVMLHTGLRTMEVCDLAPGDIQIGKLTVRSGKRNKQREVPLNATCRSALEKYLV 206

Query: 247 MTPIGKETFFIN-NDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATA 304
             P G    F +     +++        +    KA +   SAH +R     + A      
Sbjct: 207 YLPPGSPYLFPSEKTGDRLSERALRHLIQKYMKKARLKGLSAHDLRHRFGYVMAVN-TPL 265

Query: 305 HELMATYGWKTVDQAETYTKG 325
           H L    G  + D    Y K 
Sbjct: 266 HRLAQIMGHDSPDTMMIYVKA 286


>gi|300858733|ref|YP_003783716.1| tyrosine recombinase [Corynebacterium pseudotuberculosis FRC41]
 gi|300686187|gb|ADK29109.1| tyrosine recombinase [Corynebacterium pseudotuberculosis FRC41]
 gi|302206440|gb|ADL10782.1| Tyrosine recombinase XerC [Corynebacterium pseudotuberculosis C231]
 gi|302330996|gb|ADL21190.1| Tyrosine recombinase XerC [Corynebacterium pseudotuberculosis 1002]
 gi|308276682|gb|ADO26581.1| Tyrosine recombinase XerC [Corynebacterium pseudotuberculosis I19]
          Length = 293

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 41/277 (14%), Positives = 90/277 (32%), Gaps = 19/277 (6%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQII-RKSGDFDYRKITTKHIRSGVESRKHT 129
             LI ++ +        +  +   + S  +    RK    D+     +       +   T
Sbjct: 5   SALIDDFIEHLELVSGRSPATLKGYRSDLNTFAMRKPELKDFTLDNLRDWLGEAVAEGKT 64

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---- 185
            ++  + + + R +  W ++Q Y+  +    +  PK      +       +         
Sbjct: 65  RATLARRVAAARSMSSWLLKQGYIETDMAARLVAPKVGRHLPKVLAAGQAESVVEHPASK 124

Query: 186 -WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMK 243
             +E ++ R   E L  +G+R S+ C   ++ +     ++K   K      V        
Sbjct: 125 TEAEFARDRAVLELLYATGIRVSELCGINLEDIDWRRKTLKVLGKGDKQRVVPFGQAACD 184

Query: 244 LL----------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKF 292
            L                +   F+     +++  Q      A   +AG+     H VR  
Sbjct: 185 ALTHWIETGRPAMCKDQSEAALFLGVRGGRLDPRQVRRLVDAAGKEAGISGLGPHSVRHT 244

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           +AT   D GA    +    G  +++  + YT  + + 
Sbjct: 245 AATHMLDGGADLRIVQELLGHSSLNTTQIYTHVSSQR 281


>gi|69246761|ref|ZP_00604109.1| Phage integrase:Phage integrase, N-terminal SAM-like [Enterococcus
           faecium DO]
 gi|257878024|ref|ZP_05657677.1| phage integrase [Enterococcus faecium 1,230,933]
 gi|257881190|ref|ZP_05660843.1| phage integrase [Enterococcus faecium 1,231,502]
 gi|257884853|ref|ZP_05664506.1| phage integrase [Enterococcus faecium 1,231,501]
 gi|257889777|ref|ZP_05669430.1| phage integrase [Enterococcus faecium 1,231,410]
 gi|257892286|ref|ZP_05671939.1| phage integrase [Enterococcus faecium 1,231,408]
 gi|261207608|ref|ZP_05922293.1| phage integrase [Enterococcus faecium TC 6]
 gi|289565120|ref|ZP_06445573.1| tyrosine recombinase XerC [Enterococcus faecium D344SRF]
 gi|293556768|ref|ZP_06675331.1| tyrosine recombinase XerC [Enterococcus faecium E1039]
 gi|293563426|ref|ZP_06677875.1| tyrosine recombinase XerC [Enterococcus faecium E1162]
 gi|293568161|ref|ZP_06679497.1| tyrosine recombinase XerC [Enterococcus faecium E1071]
 gi|294614817|ref|ZP_06694712.1| tyrosine recombinase XerC [Enterococcus faecium E1636]
 gi|294617496|ref|ZP_06697127.1| tyrosine recombinase XerC [Enterococcus faecium E1679]
 gi|294622307|ref|ZP_06701350.1| tyrosine recombinase XerC [Enterococcus faecium U0317]
 gi|68195115|gb|EAN09575.1| Phage integrase:Phage integrase, N-terminal SAM-like [Enterococcus
           faecium DO]
 gi|257812252|gb|EEV41010.1| phage integrase [Enterococcus faecium 1,230,933]
 gi|257816848|gb|EEV44176.1| phage integrase [Enterococcus faecium 1,231,502]
 gi|257820691|gb|EEV47839.1| phage integrase [Enterococcus faecium 1,231,501]
 gi|257826137|gb|EEV52763.1| phage integrase [Enterococcus faecium 1,231,410]
 gi|257828665|gb|EEV55272.1| phage integrase [Enterococcus faecium 1,231,408]
 gi|260077991|gb|EEW65697.1| phage integrase [Enterococcus faecium TC 6]
 gi|289163127|gb|EFD10974.1| tyrosine recombinase XerC [Enterococcus faecium D344SRF]
 gi|291589151|gb|EFF20963.1| tyrosine recombinase XerC [Enterococcus faecium E1071]
 gi|291592279|gb|EFF23893.1| tyrosine recombinase XerC [Enterococcus faecium E1636]
 gi|291596236|gb|EFF27498.1| tyrosine recombinase XerC [Enterococcus faecium E1679]
 gi|291598199|gb|EFF29297.1| tyrosine recombinase XerC [Enterococcus faecium U0317]
 gi|291601100|gb|EFF31389.1| tyrosine recombinase XerC [Enterococcus faecium E1039]
 gi|291604687|gb|EFF34172.1| tyrosine recombinase XerC [Enterococcus faecium E1162]
          Length = 301

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 47/281 (16%), Positives = 98/281 (34%), Gaps = 34/281 (12%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFE---SYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127
           L++LI E          +  ++ ++E    +F   + +SGD D  K     +R  + +  
Sbjct: 11  LRYLIVE-------RGYSEKTKEAYEEDILHFKHFLEESGDADLLKAEYFTVRVYLSALA 63

Query: 128 H-----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
                 + +S  + + S+R  +++ +++E +  NP   V   K+     R + + +MQ  
Sbjct: 64  DHRPSYSRNSISRKIASLRSFYQYLLKEEVIKENPFSYVHLKKKNLRLPRFFYENEMQAL 123

Query: 183 KSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVEL 237
                       + R   E L  SG+R S+     V  +  ++   +   K        L
Sbjct: 124 FDSVAGDSPLDLRNRALLEVLYGSGIRLSECSSLSVSDIDFDSEVMLIHGKGNKERYAPL 183

Query: 238 ------------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS 285
                        +G   L+       +  F+N+  + +  T           K+ ++  
Sbjct: 184 GSFAQDALQEYFREGRQVLMTKYHEEHDIVFVNHHGKPITPTGIEYVLNQMIKKSSLDSD 243

Query: 286 --AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              H +R   AT   + GA    +    G   +   + Y  
Sbjct: 244 IHPHMLRHTFATHLLNNGADLRTVQELLGHANLSTTQIYAH 284


>gi|306818595|ref|ZP_07452318.1| tyrosine recombinase XerD [Mobiluncus mulieris ATCC 35239]
 gi|304648768|gb|EFM46070.1| tyrosine recombinase XerD [Mobiluncus mulieris ATCC 35239]
          Length = 319

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 44/284 (15%), Positives = 92/284 (32%), Gaps = 32/284 (11%)

Query: 85  GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHTPSS--------A 133
              + ++  +++    + +      G     ++T   +   V +     +S         
Sbjct: 28  RGASPHTIAAYQRDLQRYVAYLQILGRDTLAQVTEIDLEGFVRALGDGFASFPPLGSTSV 87

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG---- 189
            + L + R   ++      +  N   SV+  K           E+M+   +  S      
Sbjct: 88  RRCLAAARSWHRYLFDSGSLGANVASSVKPAKLPRRLPETLNLEEMEALLAAASSPGDSN 147

Query: 190 -SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELP-----DGF 241
             + R   EFL  SG R S++    +  +        ++    G    + +         
Sbjct: 148 SLRDRALLEFLYASGARISEAMNLVLDDIDFETEPALVRLFGKGRKERISMLGRQACQAL 207

Query: 242 MKLL-AMTPI------GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292
              L  + P        +   F+N   + M+        +A A +A +++    H +R  
Sbjct: 208 QAYLVRVRPTLAEKGQSRGRVFLNTYGKPMSRQTAWAIIQAAAKRAQIDRPVHPHTLRHC 267

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
            AT     GA    +    G  +V   E YTK + ++ L +  S
Sbjct: 268 FATHLLQGGADIRVVQELLGHASVTTTEIYTKVSKQMLLEVYAS 311


>gi|238756290|ref|ZP_04617605.1| Tyrosine recombinase [Yersinia ruckeri ATCC 29473]
 gi|238705496|gb|EEP97898.1| Tyrosine recombinase [Yersinia ruckeri ATCC 29473]
          Length = 276

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 40/253 (15%), Positives = 83/253 (32%), Gaps = 19/253 (7%)

Query: 91  SRISFESYFDQIIRKSGDFDYRK---ITTKHIRSGVESRKHTP---SSAIQFLTSMRVLF 144
           +  S+      ++  +G  +      +    +RS V   K      +S    L+++R   
Sbjct: 2   TITSYSRQLQALMELAGQMELSHWENLDAAQVRSLVSRSKRAGLQSASLALRLSALRSFL 61

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLAFEFLLY 201
            W V Q  +  NP   V  P+      +    +++ +            + R   E +  
Sbjct: 62  DWLVSQGVLHANPAKGVSTPRTGRHLPKNIDVDEVSRLLDIDLNDPLAVRDRAMLEVMYG 121

Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI--------ITVELPDGFMKLLAMTPIGKE 253
           +GLR ++      +H+      I     G+           V     ++ L  +     +
Sbjct: 122 AGLRLAELVGMDGKHVDLASGEIWVMGKGSKERKVPMGATAVTWLQHWLALRDLFAPSDD 181

Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATY 311
             F+ N  ++++A      F     K GV  +   H +R   AT   ++      +    
Sbjct: 182 AIFLANTGKRISARNVQKRFAEWGIKQGVSSHIHPHKLRHSFATHMLESSGDLRAVQELL 241

Query: 312 GWKTVDQAETYTK 324
           G   +   + YT 
Sbjct: 242 GHANLTTTQIYTH 254


>gi|125623479|ref|YP_001031962.1| integrase-recombinase [Lactococcus lactis subsp. cremoris MG1363]
 gi|124492287|emb|CAL97219.1| integrase-recombinase [Lactococcus lactis subsp. cremoris MG1363]
 gi|300070227|gb|ADJ59627.1| integrase-recombinase [Lactococcus lactis subsp. cremoris NZ9000]
          Length = 311

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 94/302 (31%), Gaps = 36/302 (11%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS-----GDFDYRKITTKHIR---SG 122
            + L+ EY      G+ +  +  ++E + D+ I         + D   I   H +   S 
Sbjct: 3   FEQLVKEYLLELKLGNYSKRTMETYEQHIDKFIDFYRKEICKEMDIYAINKMHYKLFISQ 62

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           +       +     L S +  + + +R++ +  +P  S++  K   + +  +  ++++  
Sbjct: 63  LLDNSLRATYINAILKSNKAFYSYLIREQVLKTSPMDSIKLLKETKQALTTFNDDEVKAM 122

Query: 183 KSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
            + W+  +    + +     L  +G+R S+        L +    +   K      V + 
Sbjct: 123 LNVWNFNTYLNARNKCIIAVLADTGIRISELINIKDSDLTDQYIRV-LGKGDKWRVVPIS 181

Query: 239 DGFMKLLAMTPI-GKETF--FINNDKQKMNATQF------SIWFK--------------A 275
           +    LL          F    N + +                 K               
Sbjct: 182 NELNYLLTKYKRLRDNHFNKIRNRNGKVRELDSELFLGKTGRSIKTITNIEVMITQTGLQ 241

Query: 276 KATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335
              +A V  S H  R +    S + G     +    G   +   + Y +     +L  K 
Sbjct: 242 ANVRASVRCSPHQFRHYWTCKSLELGQDIFTISKLLGHTNLSTTQIYLQKLTNEQLISKA 301

Query: 336 SR 337
            +
Sbjct: 302 VK 303


>gi|187930760|ref|YP_001901247.1| site-specific tyrosine recombinase XerC [Ralstonia pickettii 12J]
 gi|254799354|sp|B2U7W2|XERC_RALPJ RecName: Full=Tyrosine recombinase xerC
 gi|187727650|gb|ACD28815.1| tyrosine recombinase XerC [Ralstonia pickettii 12J]
          Length = 328

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 54/289 (18%), Positives = 100/289 (34%), Gaps = 40/289 (13%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIR----KSGDFDYRKITTKHIRSGVESR--- 126
           I+ Y  +  +   L+ ++  S+      + R     + + D  ++ + HIR  +      
Sbjct: 19  IAAYLDALKFERQLSPHTLQSYTRELAVLQRLGAQHAANIDLTQLQSHHIRRMMAQLHGD 78

Query: 127 KHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQ 181
             +  S  + L++ R  FKW A+R   V  NP   V  PK      +  + E     M+Q
Sbjct: 79  GLSGRSIARALSAWRGWFKWMALRDAAVTANPVDGVRAPKSPKRLPKALSVEQAVALMEQ 138

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN------IFSIKTQ------KT 229
                +E  + R   E     GLR S+     ++H++           ++ +      K 
Sbjct: 139 LPGDDAETIRDRAVNELFYSCGLRLSELVSLDMRHVKAGAYESASWLDLEAREVQVLGKG 198

Query: 230 GTIITVEL----PDGFMKLLA---------MTPIGKETFFINNDKQKMNATQFSIWFKAK 276
               TV +     +     LA           P      F++   +++   Q  +  K  
Sbjct: 199 SKRRTVPVGTKATEALAAWLAVRAQLAKSDAAPEDAHALFLSPRGKRLAQRQIQLRMKRN 258

Query: 277 ATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           A  AGV      H +R   AT    +      +    G  ++   + YT
Sbjct: 259 AIAAGVPADVHPHVLRHSFATHMLQSSGDLRAVQELLGHASIASTQVYT 307


>gi|312794237|ref|YP_004027160.1| integrase family protein [Caldicellulosiruptor kristjanssonii
           177R1B]
 gi|312181377|gb|ADQ41547.1| integrase family protein [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 290

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 41/282 (14%), Positives = 94/282 (33%), Gaps = 24/282 (8%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS---------GVE 124
           L+ E+ +          + I++    +  ++        +                  + 
Sbjct: 3   LLEEFEQWLRAIDHTQKTVINYVKDIELFLKWYEQTTGEEFRPSAYNEFVLTQYKSYMLT 62

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK--RKTEGIRPWTKEDMQQF 182
            +K  PSS  + + ++R    + V + Y+  NP  ++++ K  R        +K+D+ + 
Sbjct: 63  VQKLKPSSVNRKIQALRKFGCFLVAKGYLQTNPAENLKQVKDVRDNLAPAALSKQDVFRL 122

Query: 183 KSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKT-QKTGTIITVEL 237
           +       + R     E  L +GLR S+     ++ ++       ++   K      + L
Sbjct: 123 RKTVYMYGKIRDIAIIELFLNTGLRLSELANLKIEDIEIGERKGKLRVLGKGRKYREIPL 182

Query: 238 PDGFMKLL-----AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKF 292
                K+L         I  +  F  +  + +         K  A +AG+    H +R  
Sbjct: 183 NSEIRKILSQYLEKRKHIDCDFLFTTSTGKPLQPNSIYRLVKRYAERAGIELHPHMLRHT 242

Query: 293 SATISADAGATAHELMATYGWKTVDQAETY---TKGADRIRL 331
            A    D G    ++    G + ++    Y   ++      L
Sbjct: 243 FAQTLIDKGTNVFDVKYLLGHEKLETTMRYKQPSREVQEKAL 284


>gi|304389555|ref|ZP_07371517.1| tyrosine recombinase XerD [Mobiluncus curtisii subsp. curtisii ATCC
           35241]
 gi|315656798|ref|ZP_07909685.1| tyrosine recombinase XerD [Mobiluncus curtisii subsp. holmesii ATCC
           35242]
 gi|304327108|gb|EFL94344.1| tyrosine recombinase XerD [Mobiluncus curtisii subsp. curtisii ATCC
           35241]
 gi|315492753|gb|EFU82357.1| tyrosine recombinase XerD [Mobiluncus curtisii subsp. holmesii ATCC
           35242]
          Length = 318

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 54/289 (18%), Positives = 92/289 (31%), Gaps = 43/289 (14%)

Query: 66  KKPTTLKWLISEYRKSAHWG------SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119
             P T+     + R+   +       SL   +    ES+   +    GD+          
Sbjct: 30  ASPHTVAAYTRDLRRYITFLIANGVNSLDEVTLPVLESFARALEAGFGDYAAVA------ 83

Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
                     PSSA + + S+R   ++A     V  NP   +   K         T E++
Sbjct: 84  ----------PSSARRVIASVRSWHRYAYETGVVRANPTKGIAPAKVGAHLPTVLTVEEV 133

Query: 180 QQFKSFWSEG-----SQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTI 232
           Q      S        + R   EFL  +G R S++    V  +     I  ++    G  
Sbjct: 134 QTLLEAASAPGDDNALRDRALLEFLYATGARISEAVNLAVDDINLDEEIPLVRLFGKGRK 193

Query: 233 ITVELPDGFMKL------------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280
             + +     K             LA     +   F+N   + ++        +A A +A
Sbjct: 194 ERLSMLGHLAKDALEAYLVRVRPRLAEKGRSQGRVFLNTLGRPLSRQSAWAIIQAAAQRA 253

Query: 281 --GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
              V    H +R   AT     GA    +    G  +V   + YTK ++
Sbjct: 254 QITVPVGPHTLRHCFATHLLQGGADVRAVQELLGHASVTTTQIYTKVSN 302


>gi|164688594|ref|ZP_02212622.1| hypothetical protein CLOBAR_02239 [Clostridium bartlettii DSM
           16795]
 gi|164603007|gb|EDQ96472.1| hypothetical protein CLOBAR_02239 [Clostridium bartlettii DSM
           16795]
          Length = 295

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 41/276 (14%), Positives = 100/276 (36%), Gaps = 21/276 (7%)

Query: 74  LISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDF-----DYRKITTKHIRSGVESRK 127
           ++ EY         L+ N+  S+     + +    +      D  +         +E   
Sbjct: 3   VLEEYLNYIEKNKKLSKNTVASYNRDLKKYVEYLNERNINLSDVVENDIISYLIELEKED 62

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            + +S  + ++S++    +    + +  +P  ++++PK K   +   T++++ +   F  
Sbjct: 63  ISVASISRMISSIKSYHDYLFFNKILDTDPSKNIKKPKVKRVDVEILTEDEVDKLLKFED 122

Query: 188 EGSQPR----LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG--- 240
             +  R      FE L  +G++ ++     ++ +   I  I          + L +    
Sbjct: 123 LSTPKRIRDKAIFEILYGTGIKVTELIDMNLEDVDLEIDYIYCGSGKNQRVIPLCETTEF 182

Query: 241 -FMKLL-----AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHG--VRKF 292
             +K +      +T   ++  F+N   Q+          K  A +A +NK+ +   +R  
Sbjct: 183 YLLKYINESRNELTYPEEKALFVNAQGQRFTRQGLWKLIKKYAKEADINKNINPTVLRNS 242

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
            A    + GA    +    G   +   + Y K  D+
Sbjct: 243 FAIHLLNGGANVAVVNKILGNSNLSSLQLYLKHIDK 278


>gi|315089284|gb|EFT61260.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL072PA1]
          Length = 315

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 43/296 (14%), Positives = 97/296 (32%), Gaps = 27/296 (9%)

Query: 56  PKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI---IRKSGDFDYR 112
                     + P +L   + ++         + N+   + +    +       GD    
Sbjct: 3   KPPPTRVGAGQLPMSLTVPVEDFCGHLSALRRSPNTIRGYRADLIDLMGHAHSHGDDTLG 62

Query: 113 KITTKHIRSGVESRKHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
           +I T  +R+ +   +   +SA    +  ++ RV F+WA  +  ++ +P  ++   K    
Sbjct: 63  RIGTSQVRAWLADTRVAGASAATMQRRWSAARVFFRWAANEGLISADPTTALNSAKVPKR 122

Query: 170 GI---------RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220
                          +   Q        G++     E L   GLR  + C   +  +  +
Sbjct: 123 LPATLGVDQARHILDEAVAQARHDESPHGARDAAILEVLYGGGLRVGELCGLDLGDVDRS 182

Query: 221 IFSIK-TQKTGTIITVELPDGFMKLLAMT---------PIGKETFFINNDKQKMNATQFS 270
             ++K T K     TV +    ++ +            P   +  F+    ++++     
Sbjct: 183 RRTVKVTGKGDKERTVPMGAPALRAIDTWLPRREEWVGPHSGQALFLGARGRRIDQRVVR 242

Query: 271 IWFK--AKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
                  +A     +   HG+R   AT   + GA    +    G +++   + YT 
Sbjct: 243 RVVHTHLRAEPDSPDLGPHGLRHAMATHLLEGGADLRTVQDILGHESLATTQIYTH 298


>gi|256828291|ref|YP_003157019.1| integrase family protein [Desulfomicrobium baculatum DSM 4028]
 gi|256577467|gb|ACU88603.1| integrase family protein [Desulfomicrobium baculatum DSM 4028]
          Length = 312

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 42/264 (15%), Positives = 90/264 (34%), Gaps = 24/264 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDF--------DYRKITTKHIRSGVESRKHTPSSAIQF 136
              +  +  ++ +  +      G          +  K       + +  R    SS  + 
Sbjct: 23  RGYSPATVAAYGTDLEGAHLFLGRRSKGFDAPGEVTKADITAYLADLHRRGLAKSSVCRK 82

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFWSEGSQP 192
           L+++R  +++  +++ V  +PC ++  PK      +    +     ++   +   EG + 
Sbjct: 83  LSALRAFYRFLRQRKMVVEDPCAALANPKLPKVHPKVLNVDQAIHLVETEITLDPEGLRD 142

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLA----- 246
               E L  SGLR S++      H+  +   ++   K      V L     + LA     
Sbjct: 143 LALLEVLYGSGLRVSEALGLDFAHVDLDQKLVRVLGKGRKERLVPLTGPAAERLARYIEQ 202

Query: 247 ----MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADA 300
                    ++  F+     +++  Q     K  A ++G   S   H +R   A+    A
Sbjct: 203 RGAFAPAAREQAVFLGKRGGRLSRKQADRIVKEMAVRSGAPCSISPHTLRHSFASHMLQA 262

Query: 301 GATAHELMATYGWKTVDQAETYTK 324
           GA    +    G   +   + YT 
Sbjct: 263 GADLRSVQELLGHSRISTTQRYTH 286


>gi|237654487|ref|YP_002890801.1| tyrosine recombinase XerC [Thauera sp. MZ1T]
 gi|237625734|gb|ACR02424.1| tyrosine recombinase XerC [Thauera sp. MZ1T]
          Length = 304

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 44/272 (16%), Positives = 90/272 (33%), Gaps = 25/272 (9%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---K 127
           L WL ++         ++  +  ++ +    ++R + +     +    IR  V       
Sbjct: 21  LAWLATQ-------RRVSPLTLTAYRAGLQALLRLAEEHPPESLQPADIRRFVARLHGEG 73

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
               S  + L++ R  ++W VR+  V INP L +  PK  +   R  + E          
Sbjct: 74  QQGRSIARHLSAWRGFYRWLVREHGVRINPALGIRPPKSPSTLPRVLSPEQANALLDPEP 133

Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQH----------LQNNIFSIKTQKTGTIIT 234
           +     +    FE    SGLR ++     +            +       +T   G    
Sbjct: 134 QNLLEIRDIAMFELFYSSGLRVAELAGLDIDSGLDLAEGLVTVTGKRQRQRTVPVGGKAI 193

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF--KAKATKAGVNKSAHGVRKF 292
             L         +   G+   F+  D  +++    +     +A+A   GV+   H +R  
Sbjct: 194 AALRPWLEIRAGLAAAGERALFVTRDGHRLSTRGIASRLGTRAQALGLGVHVHPHMLRHS 253

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324
            A+    +      +    G  ++   + YT 
Sbjct: 254 FASHLLQSSGDLRAVQELLGHASIRSTQIYTH 285


>gi|326391735|ref|ZP_08213258.1| tyrosine recombinase XerD [Thermoanaerobacter ethanolicus JW 200]
 gi|325992235|gb|EGD50704.1| tyrosine recombinase XerD [Thermoanaerobacter ethanolicus JW 200]
          Length = 290

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 35/249 (14%), Positives = 92/249 (36%), Gaps = 17/249 (6%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDF-----DYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
             L+ N+  S+    +Q +    +      + +K T  +    ++ +  + ++  + L+S
Sbjct: 17  KKLSKNTLESYNRDINQFLNYLEEIGINCYNVKKSTILNYLYYLKKKGKSQATVSRNLSS 76

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195
           ++  + +   ++ +  +P   +  PK + +     T E +    S       +G + +  
Sbjct: 77  LKAFYHYLFMKKKIEEDPTYMINTPKVEKKPPTTLTVEQVDMLLSLDFGDDEKGLRDKAL 136

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII------TVELPDGFMKLLAMTP 249
            E L  +GL+ S+     ++ +  +   +  +     +       +E    +++      
Sbjct: 137 IELLYATGLKVSEVISLKLEDVNLSYGYVVIRSNKERVIPIGSHAIEALKNYIEKGRKAK 196

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKA--GVNKSAHGVRKFSATISADAGATAHEL 307
            G+ T F+N   QK+         +    K   G   + + +R+  A      GA    +
Sbjct: 197 NGENTLFLNLRGQKLTRQGCWKIIREYTDKINPGFPVTPNTLRQSFAQHMLQNGADIRAV 256

Query: 308 MATYGWKTV 316
               G++T 
Sbjct: 257 QEMLGYQTD 265


>gi|313813390|gb|EFS51104.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL025PA1]
 gi|327334220|gb|EGE75934.1| putative tyrosine recombinase XerC [Propionibacterium acnes
           HL097PA1]
          Length = 315

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 43/284 (15%), Positives = 96/284 (33%), Gaps = 27/284 (9%)

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVE 124
           P +L   + ++         + N+   + +    +       GD    +I T  +R+ + 
Sbjct: 15  PMSLTVPVEDFCGHLSALRRSPNTIRGYRADLIDLMGHAHSHGDDALGRIGTSQVRAWLA 74

Query: 125 SRKHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI---------R 172
             +   +SA    +  ++ RV F+WA  +  ++ +P  ++   K                
Sbjct: 75  DTRVAGASAATMQRRWSAARVFFRWAANEGLISADPTTALNSAKVPKRLPATLGVDQARH 134

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGT 231
              +   Q        G++     E L   GLR  + C   +  +  +  ++K T K   
Sbjct: 135 ILDEAVAQARHDESPHGARDAAILEVLYGGGLRVGELCGLDLGDVDRSRRTVKVTGKGDK 194

Query: 232 IITVELPDGFMKLLAMT---------PIGKETFFINNDKQKMNATQFSIWFK--AKATKA 280
             TV +    ++ +            P   +  F+    ++++            +A   
Sbjct: 195 ERTVPMGAPALRAIDTWLPRREEWVGPHSGQALFLGARGRRIDQRVVRRVVHTHLRAEPD 254

Query: 281 GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             +   HG+R   AT   + GA    +    G +++   + YT 
Sbjct: 255 SPDLGPHGLRHAMATHLLEGGADLRTVQDILGHESLATTQIYTH 298


>gi|309804168|ref|ZP_07698246.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 11V1-d]
 gi|309805694|ref|ZP_07699734.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 09V1-c]
 gi|308163751|gb|EFO66020.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 11V1-d]
 gi|308164947|gb|EFO67190.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 09V1-c]
          Length = 179

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 53/160 (33%), Gaps = 15/160 (9%)

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVEL 237
           +    +    G + R   E L  +G+R S+        +   +  IK   K      + +
Sbjct: 2   INMPDTTTDLGIRDRAILETLYATGMRVSEVINLNEDSIHEELHLIKVFGKGSKQRLIPI 61

Query: 238 PDGFMKLLAMTPIG------------KETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284
            +  M  +    I             ++  F+N+   K+         K     AG+NK 
Sbjct: 62  SNVAMSWIKKYQITVRNKTLLESGKFEKAIFLNSRGGKITRQAVWQMIKRYCQLAGINKN 121

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
            + H +R   AT   + GA    +    G   +   + YT
Sbjct: 122 VTPHTLRHTFATHLLENGADLRIVQEILGHSDISTTQIYT 161


>gi|260592787|ref|ZP_05858245.1| tyrosine recombinase XerD [Prevotella veroralis F0319]
 gi|260535318|gb|EEX17935.1| tyrosine recombinase XerD [Prevotella veroralis F0319]
          Length = 292

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 47/276 (17%), Positives = 101/276 (36%), Gaps = 25/276 (9%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESRK 127
           K L  +Y K     + +  +   +     +  R     D    +  + +  +R  +E   
Sbjct: 2   KDLFLDYLKLER--NYSPATVKHYRDDLKEFERFFQGLDQQLSWESVDSDIVRRWMEYMM 59

Query: 128 HTPSSA---IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF-- 182
              ++A    + L+++R  +++A+R+  V  +P   ++ P+RK    +   + +M Q   
Sbjct: 60  DKGNAASSVNRRLSALRSFYRYALRRNLVVKDPVHGIQGPRRKRPLPQFLKESEMDQLLD 119

Query: 183 KSFWSEGSQPRLAFEFL---LYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELP 238
           +  W++  +  LA   +     +G+R S+      + +   N     T K      +   
Sbjct: 120 ERMWTDSYKDVLARTIIVTFYETGVRISELIGLNDKDVDYINCEIKVTGKRDKQRIIPFG 179

Query: 239 DGFMKLLAMTPIGKE--------TFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHG 288
           D  +K L      ++         FF     +++   Q     K   +K      +S H 
Sbjct: 180 DELLKTLTAYQQQRDVETESESVAFFRTEKGKRVTDEQVRQMVKINLSKVSTLKKRSPHV 239

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +R   AT   +  A    +    G +++   E YT 
Sbjct: 240 LRHTFATAMLNHDAGLESVKELLGHESLSTTEIYTH 275


>gi|70733299|ref|YP_263073.1| site-specific tyrosine recombinase XerC [Pseudomonas fluorescens
           Pf-5]
 gi|123748313|sp|Q4K3W0|XERC_PSEF5 RecName: Full=Tyrosine recombinase xerC
 gi|68347598|gb|AAY95204.1| tyrosine recombinase XerC [Pseudomonas fluorescens Pf-5]
          Length = 298

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 33/259 (12%), Positives = 88/259 (33%), Gaps = 19/259 (7%)

Query: 85  GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIR---SGVESRKHTPSSAIQFLT 138
             ++ ++  ++    +++     K     +  +  + +R   + +  +  +  S  + L+
Sbjct: 16  RQVSPHTLQAYRRDLEKVLGFCEKMQVRSWTDLDIQGLRSLIARLHQQGQSSRSLARLLS 75

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRL 194
           ++R L+ +  R+     +P   +  PK +    +    +   Q      E      + + 
Sbjct: 76  AVRGLYHYLNREGLCTHDPANGLAPPKGERRLPKTLDTDRTLQLLDGAVEDDFLAHRDQA 135

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV--------ELPDGFMKLLA 246
             E     GLR S+     +  L      ++    G+   V           + ++ L A
Sbjct: 136 ILELFYSCGLRLSELTSLNLDQLDLADGLVQVHGKGSKTRVLPVGKKARSALEQWLPLRA 195

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAK-ATKAGVNKSAHGVRKFSATISADAGATAH 305
           ++       F++   +++      +  KA    + G N   H +R   A+   ++     
Sbjct: 196 LSNPPDGALFVSQKGRRLGPRAIQLRVKAAGERELGQNLHPHMLRHSFASHLLESSQDLR 255

Query: 306 ELMATYGWKTVDQAETYTK 324
            +    G   +   + YT 
Sbjct: 256 AVQELLGHSDIKTTQIYTH 274


>gi|313619210|gb|EFR90975.1| tyrosine recombinase XerC [Listeria innocua FSL S4-378]
          Length = 300

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 42/273 (15%), Positives = 99/273 (36%), Gaps = 27/273 (9%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGD---FDYRKITTKHIRSGVESRKHT---P 130
           +Y  S    + + ++  ++E+      R   +    +Y+++T   +R  +   K      
Sbjct: 13  DYLHSER--NYSEHTSTAYENDLSDFRRFLNEQAIIEYQQVTFLDVRIYLTELKQKSFSR 70

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-----FKSF 185
           ++  + ++S+R  + + +R+  +  NP   V   K +    + +  E+M+      ++  
Sbjct: 71  TTVARKISSLRSFYTFLLRENVITENPFTYVSHAKNQLRLPKFFYSEEMEALFQVVYEDN 130

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVE-------- 236
            +   + R+  E L  +G+R S+     +  L  +  +I    K      V         
Sbjct: 131 ETLTLRDRVILEVLYGTGIRVSECAGIMLSDLDTSYQAILIRGKGNKERYVPFGAYAEDA 190

Query: 237 LPDGFM---KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRK 291
           + D      +L+       +   IN+    +             +KA + +    H +R 
Sbjct: 191 ITDYLSGRIELMTRFKKTHDALLINHYGDPLTTRGIRYCLTKIISKASLTRKIHPHMLRH 250

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK 324
             AT   + GA    +    G  ++   + YT 
Sbjct: 251 TFATDLLNNGADMRTVQELLGHASLSSTQIYTH 283


>gi|66047873|ref|YP_237714.1| Phage integrase:Phage integrase, N-terminal SAM-like [Pseudomonas
           syringae pv. syringae B728a]
 gi|63258580|gb|AAY39676.1| Phage integrase:Phage integrase, N-terminal SAM-like [Pseudomonas
           syringae pv. syringae B728a]
          Length = 317

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 54/277 (19%), Positives = 105/277 (37%), Gaps = 32/277 (11%)

Query: 84  WGSLA-VNSRISFESYFDQIIRKS---GDFDYRKITTKHI---RSGVESRKHTPSSAIQF 136
           + +L    +R ++++               D+R++T  H+   R+ +E R    ++  + 
Sbjct: 30  FANLDNPRTRRAYQNDLTDFSSFIVLASADDFRQVTRSHVLAWRADLEQRGLAGATIRRK 89

Query: 137 LTSMRVLFKWAVRQE-YVAINPCLSVERPKRKT-EGIRPWTKED-----MQQFKSFWSEG 189
           L ++  LF   +     V  NP   V+RP+ ++ EG  P   +      +        +G
Sbjct: 90  LAALASLFDHLLENNAVVGGNPVHGVKRPRIESNEGKTPALGDHQAKALLDAPDESTLKG 149

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKT-QKTGTIITVELPDG------ 240
            + R     LLY GLR  ++ +  V  +  +  I  +K   K G +  + L         
Sbjct: 150 LRDRAMLAVLLYHGLRREEAAQLQVSDIQERRGIQHLKIHGKGGKVRYLPLHPVAAGRIH 209

Query: 241 --FMKLLAMTPIGKETFFINNDKQ----KMNATQFSIWFKAKATKAGVNKS---AHGVRK 291
               +        K   FI+   +     ++A        A A KAG+       HG+R 
Sbjct: 210 MYLERSGHHLVDKKVPLFISLRGKSTGAGVSANGIYTVVGAYAKKAGIKVDGLGVHGLRA 269

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
            +AT + +  A   ++ A  G   +   + Y +  +R
Sbjct: 270 TAATNALEHEADIAKVQAWLGHANISTTKIYDRRENR 306


>gi|269467899|gb|EEZ79638.1| site-specific recombinase XerC [uncultured SUP05 cluster bacterium]
          Length = 292

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 39/256 (15%), Positives = 93/256 (36%), Gaps = 16/256 (6%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG------VESRKHTPSSAIQFLT 138
              A+N++ ++     +++  +      +  +    +       +  +  +  +  + L+
Sbjct: 16  RGYALNTQQAYARDLQKLLAFTQTQSVERWASLSSENLNLFVMTMRHQNISGRTIRRHLS 75

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG---SQPRLA 195
           S+R    + V Q  + +N    ++ PK      +    E + Q  +  S      +    
Sbjct: 76  SIRGFLSYLVNQGLLEVNCAQGLQSPKVAKSLPKTLDYERLVQMLTPKSSAFSELRDAAM 135

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII-TVELPDGFMK----LLAMTPI 250
            E L   GLR S+     ++ +  +   ++    G+ +    L +   K     L  T  
Sbjct: 136 VEVLYSCGLRVSELVGLDIEDVDASQGFLRVMGKGSKVRYTPLGESAQKSINRYLQKTSH 195

Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELM 308
             +  F+NN +++++        K +A   G+  N   H +R  +AT    +      + 
Sbjct: 196 TNKALFVNNRQERISTRTVQNIIKNRALSVGIKVNVHPHMLRHAAATHFLQSSHDLRSVQ 255

Query: 309 ATYGWKTVDQAETYTK 324
              G K++   + YT 
Sbjct: 256 EFLGHKSIKSTQVYTH 271


>gi|24112307|ref|NP_706817.1| putative integrase encoded by prophage CP-933K; partial [Shigella
           flexneri 2a str. 301]
 gi|30062420|ref|NP_836591.1| putative integrase encoded by prophage CP-933K; partial [Shigella
           flexneri 2a str. 2457T]
 gi|217326121|ref|ZP_03442205.1| phage integrase family protein [Escherichia coli O157:H7 str.
           TW14588]
 gi|254791924|ref|YP_003076761.1| integrase encoded by prophage CP-933K [Escherichia coli O157:H7
           str. TW14359]
 gi|261224477|ref|ZP_05938758.1| integrase encoded by prophage CP-933K [Escherichia coli O157:H7
           str. FRIK2000]
 gi|261254531|ref|ZP_05947064.1| integrase encoded by prophage CP-933K [Escherichia coli O157:H7
           str. FRIK966]
 gi|24051165|gb|AAN42524.1| putative integrase encoded by prophage CP-933K; partial [Shigella
           flexneri 2a str. 301]
 gi|30040666|gb|AAP16397.1| putative integrase encoded by prophage CP-933K; partial [Shigella
           flexneri 2a str. 2457T]
 gi|217322342|gb|EEC30766.1| phage integrase family protein [Escherichia coli O157:H7 str.
           TW14588]
 gi|254591324|gb|ACT70685.1| integrase encoded by prophage CP-933K [Escherichia coli O157:H7
           str. TW14359]
 gi|313648473|gb|EFS12916.1| integrase [Shigella flexneri 2a str. 2457T]
 gi|320193173|gb|EFW67813.1| Phage integrase [Escherichia coli O157:H7 str. EC1212]
          Length = 256

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 46/251 (18%), Positives = 88/251 (35%), Gaps = 19/251 (7%)

Query: 96  ESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--TPSSAIQFLTSMRVLFKWAVRQEYV 153
            S    I R   D     ITTK I + +         +SA    +++   F+ A+ + ++
Sbjct: 1   MSKIKAIRRGLPDAPLEDITTKEIAAMLNGYIDEGKAASAKLIRSTLSDAFREAIAEGHI 60

Query: 154 AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG 213
             NP  +    K +    R    E ++ +++  S     RLA E  + +G R  D C   
Sbjct: 61  TTNPVAATRAAKSEVRRSRLTADEYLKIYQAAESSPCWLRLAMELAVVTGQRVGDLCEMK 120

Query: 214 VQHLQNNIFSIKTQKTGTIITVE---------LPDGFMKLLAMTPIGKETFFINNDKQKM 264
              + +    ++  KTG  I +          +            +G ET   +  ++ +
Sbjct: 121 WSDIVDGYLYVEQSKTGVKIAIPTTLHVDALGISMKETLDKCKEILGGETIIASTRREPL 180

Query: 265 NATQFSIWFKAKATKAGV-----NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
           ++   S +F      +G+       + H +R   +    +   +        G K+   A
Sbjct: 181 SSGTVSRYFMRARKASGLSFEGDPPTFHELR-SLSARLYEKQISDKFAQHLLGHKSDTMA 239

Query: 320 ETYTKGADRIR 330
             Y    DR R
Sbjct: 240 SQY--RDDRGR 248


>gi|221134095|ref|ZP_03560400.1| tyrosine recombinase [Glaciecola sp. HTCC2999]
          Length = 304

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 38/259 (14%), Positives = 92/259 (35%), Gaps = 19/259 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFLTSMR 141
              +++++ ++ ++            +  +T + ++  V   K    +  S    L+++R
Sbjct: 27  RQYSIHTQSAYINHILVCKDLLTLKKWSSLTVEQVKRMVGLSKKAGLSARSIALRLSALR 86

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE---GSQPRLAFEF 198
               + V Q  +  NP  +V  PK      +    E ++   +F  E    ++ +  FE 
Sbjct: 87  QFCHFLVEQHQLTQNPAEAVNAPKMGKPLPKHLHVEQLEGLLNFTPESVHEARDKAMFEL 146

Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD-----------GFMKLLAM 247
           +   GLR S+     +  + ++       K G    + + +             ++ +  
Sbjct: 147 VYGCGLRLSEVTGLNLLDVLDDHILNVNGKGGKQRRLPIGEHAWRAVQDWLLWRVQFITS 206

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAH 305
               +   F++    ++   Q +      ATK G++   S H +R   AT   ++     
Sbjct: 207 AAPDEPALFLSQRGGRLGNRQVAKRLTQLATKQGIDTHISPHKLRHSFATHVLESSGDLR 266

Query: 306 ELMATYGWKTVDQAETYTK 324
            +    G   +   + YT 
Sbjct: 267 AVQELLGHANLATTQVYTH 285


>gi|78067906|ref|YP_370675.1| site-specific tyrosine recombinase XerC [Burkholderia sp. 383]
 gi|77968651|gb|ABB10031.1| Tyrosine recombinase XerC [Burkholderia sp. 383]
          Length = 306

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 46/280 (16%), Positives = 90/280 (32%), Gaps = 32/280 (11%)

Query: 75  ISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTP 130
           I+ Y  +  H   L+ ++   +    D++ + +       +T   +R  V        + 
Sbjct: 6   IAAYLSNLKHVRQLSEHTLRGYTHELDELKKLANGRPLEALTAADMRGAVARAHSGGLSA 65

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFW 186
            S    L++ R  ++W  ++  +  NP  +V  PKR     +  + +D    M    +  
Sbjct: 66  RSISHRLSAWRAFYRWLAQRIEMPANPVAAVRAPKRAKTLPKALSVDDASALMNAPLANT 125

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRA-------------GVQHLQNNIFSIKTQKTGTII 233
           +EG +     E    SGLR ++                 G   L     +++  K     
Sbjct: 126 TEGIRDHAILELFYSSGLRLAELIGLDVMYTQADGYRSAGWLDLAEAEVTVR-GKGNKER 184

Query: 234 TVELPDGFMKLLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284
            V +    +  L                  F++    +M+        K  A  AG+   
Sbjct: 185 KVPVGRKAIDALNAWLAVRGEFVKHDPHPLFVSVRGNRMSPGVVRERVKRAALTAGIPAN 244

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
              H +R   AT    +      +    G  +V   + YT
Sbjct: 245 VHPHVLRHSFATHVLQSSGDLRAVQELLGHASVSATQVYT 284


>gi|300933911|ref|ZP_07149167.1| integrase/recombinase [Corynebacterium resistens DSM 45100]
          Length = 325

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 44/311 (14%), Positives = 92/311 (29%), Gaps = 30/311 (9%)

Query: 66  KKPTTLKWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
             P +L   + EY +   +    + N+  ++       +   G     + T +H R  + 
Sbjct: 3   STPPSLSRALEEYEEHLQFVVGRSENTITAYRKDLKAALE--GLDSVDEFTLEHARDVLG 60

Query: 125 ---SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
                 H+ SS  + ++S++    +   + +V  NP  ++  PK      R    E    
Sbjct: 61  WALDAGHSRSSMARMVSSLKGFGSFLAHKGWVEANPVAALRAPKLDRSLPRVLRTEQATA 120

Query: 182 FKSFW----------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTG 230
                             ++     E L  +G+R ++     +  +   +       K  
Sbjct: 121 VLDRARDHARINNEDPLATRDWAMAELLFATGMRVAELTGTDIDDVDFTHNVVRVVGKGN 180

Query: 231 TIITVELPDGFMKLLAMTPIGKE------------TFFINNDKQKMNATQFSIWFKAKAT 278
               V         +      ++              F+     ++N  Q          
Sbjct: 181 KQRVVPFGPTARTAVEAWISRRKEVLNPANGQGVAALFLGARGGRINQRQVRSVINELTD 240

Query: 279 KAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
            AG  + S HG R  +AT   + GA    +    G  ++   + YT         + N  
Sbjct: 241 AAGAPRMSPHGFRHSAATAILEGGADLRVVQEMLGHASMQTTQIYTHVGTERLKAVFNQA 300

Query: 338 RISSVVDSDDP 348
              +   +  P
Sbjct: 301 HPRAESPAQQP 311


>gi|297618199|ref|YP_003703358.1| integrase family protein [Syntrophothermus lipocalidus DSM 12680]
 gi|297146036|gb|ADI02793.1| integrase family protein [Syntrophothermus lipocalidus DSM 12680]
          Length = 298

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 36/259 (13%), Positives = 87/259 (33%), Gaps = 11/259 (4%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD--YRKITTKHIRSGVESRKHTPSSA 133
            +Y K+        +       + + +  +  D       +     R  +  + + P++ 
Sbjct: 23  EDYLKTTRARLSVESYMGDLRLFLEWLGGRGEDNPTAVTPLDASEYRRFLADKGYKPATI 82

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT-KEDMQQFKSFWSEG-SQ 191
            + + S+R  + W      V  NP    +    +    R  T  E     ++  ++G  +
Sbjct: 83  NRKIQSLRAFYGWLQEAGIVPDNPFRRTKAVPAQELAPRWLTRPEQAALMRAVRAKGRLR 142

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
                  +L++GL+  +      + +    ++    ++  K      V L      +L  
Sbjct: 143 DEAMIALMLFAGLKVGELVALEREDVVVRERSGKVVVRQGKGNKRREVPLNATARDILRR 202

Query: 248 TPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATA 304
                 T   + +    +++  Q     +  A  A + + + H +R        DAG + 
Sbjct: 203 WLEENPTGPLWPSQKGGRLSKRQVQKIVEDCAYIAKLKDVTCHKLRHTFCKNLLDAGVSI 262

Query: 305 HELMATYGWKTVDQAETYT 323
            ++ A  G   +D  + YT
Sbjct: 263 DQVAAMAGHSRLDVTKRYT 281


>gi|298531262|ref|ZP_07018662.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298508872|gb|EFI32778.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
          Length = 394

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 64/339 (18%), Positives = 125/339 (36%), Gaps = 28/339 (8%)

Query: 9   PFVTKERTRHGKIIYYFRK----GHGRRIRLPYPHESTFIPAYMSALTGSTP------KR 58
           P  T E    GK  YY R     G  ++ R+      +   A   A    +        R
Sbjct: 31  PGFTLEVRSTGKCTYYQRYRDKFGRVKQARIGPTDSISLEDARHRAKQIRSQTIMGYDPR 90

Query: 59  EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTK 117
           E +   R  P + K  + +      +  +   S    E   + +I+   G+    +IT  
Sbjct: 91  EQVEKNRNMP-SFKQFVEDKY--IPYIKVHKRSWEFDEKLINQRIMPLWGNMKLSEITRD 147

Query: 118 HIRSG---VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
            ++          H P S  +++  ++ +F  A R E +  +P   V R + +    R  
Sbjct: 148 DVQELQSNFLRMGHKPGSVNRYMALVKYIFNLAERWEVIDKSPTRHVSRLEEENHKERYL 207

Query: 175 TKEDMQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTG 230
           + ++ ++  S   +   P +    EFL+ +G R S++     Q L     ++ I  ++  
Sbjct: 208 SSDETERLLSELKKCRSPVVPDIIEFLILTGARRSEAVNLPWQELDMAKGVWIIPAERNK 267

Query: 231 TII--TVELPDGFMKLL-AMTPIGKETFFIN-NDKQKMNATQFSIWFKAKATKAGV-NKS 285
             +   + L  G + +L      G E  F N    + M    F   +     KAG+ +  
Sbjct: 268 AKVKKVIPLSRGALNVLERRKENGCEYVFPNPETGEPM--KHFHGTWDRIRKKAGIPDVR 325

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            H +R   A++  ++G + +E+    G   +   + Y  
Sbjct: 326 IHDLRHNFASLLINSGRSLYEVQKLLGHADISTTQRYAH 364


>gi|161526251|ref|YP_001581263.1| site-specific tyrosine recombinase XerC [Burkholderia multivorans
           ATCC 17616]
 gi|189349035|ref|YP_001944663.1| site-specific tyrosine recombinase XerC [Burkholderia multivorans
           ATCC 17616]
 gi|160343680|gb|ABX16766.1| tyrosine recombinase XerC [Burkholderia multivorans ATCC 17616]
 gi|189333057|dbj|BAG42127.1| tyrosine recombinase [Burkholderia multivorans ATCC 17616]
          Length = 306

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 45/280 (16%), Positives = 90/280 (32%), Gaps = 32/280 (11%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTP 130
           I+ Y  +  +   L+ ++  ++    D++ + +       +    IR  V        + 
Sbjct: 6   IAAYLSNLKYVRQLSEHTLRAYTHELDELKKLAAGRPLDTLVAADIRGAVARAHAGGLSA 65

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFW 186
            S    L++ R  ++W  ++  +  NP  +V  PKR     +  + +D    M    +  
Sbjct: 66  RSISHRLSAWRAFYRWLAQRVEMPANPVAAVRAPKRPKTLPKALSVDDASALMDAPLADT 125

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRA-------------GVQHLQNNIFSIKTQKTGTII 233
           +EG +     E    SGLR ++                 G   L     +++  K     
Sbjct: 126 TEGIRDHAILELFYSSGLRLAELIGLDVAYTQTGDYRSAGWLDLAEAEVTVR-GKGNKER 184

Query: 234 TVELPDGFMKLLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284
            V +    +  L                  F++    +M+        K  A  AG+   
Sbjct: 185 KVPVGRKAIDALNAWLAVRGEFVKHDPHPLFLSVRGNRMSPGVVRERVKRAALAAGIPAH 244

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
              H +R   AT    +      +    G  +V   + YT
Sbjct: 245 VHPHVLRHSFATHVLQSSGDLRAVQELLGHASVSATQVYT 284


>gi|317153571|ref|YP_004121619.1| tyrosine recombinase XerC [Desulfovibrio aespoeensis Aspo-2]
 gi|316943822|gb|ADU62873.1| tyrosine recombinase XerC [Desulfovibrio aespoeensis Aspo-2]
          Length = 313

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 46/265 (17%), Positives = 97/265 (36%), Gaps = 26/265 (9%)

Query: 85  GSLAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIR---SGVESRKHTPSSAIQF 136
              +  +  S+ +  +Q        K       ++T  H+R   + +   +   ++  + 
Sbjct: 25  KGYSEATIRSYGTDLEQFDGFLKRSKRSLEHPERVTRDHVRSFLAEMHRLRLGKATMGRK 84

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFWSEGSQP 192
           L+S+R  F++ +R   +  +P  ++  PK++    +    +     M+       EG + 
Sbjct: 85  LSSLRAYFRYLLRHRMITTDPTATIRNPKQEKRHPQVLNVDQAVAMMEAMIEPDPEGLRD 144

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252
               E L  SGLR S++    +  + +++  + T K      V L D  +K +      +
Sbjct: 145 LALAEVLYGSGLRISEAVGLDLNDVDSDVIRV-TGKGSKERIVPLSDAAVKRIRRYMEQR 203

Query: 253 ET-----------FFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISAD 299
                        F      +++N  Q +         AG+ K    H +R   AT   +
Sbjct: 204 HALIGDNYAEQALFLSVRSGKRLNRRQANRIVAKLGGLAGLPKDVHPHMLRHSFATHMLE 263

Query: 300 AGATAHELMATYGWKTVDQAETYTK 324
           AGA    +    G + +   + YT 
Sbjct: 264 AGADLRSVQELLGHERLTTTQRYTH 288


>gi|119385844|ref|YP_916899.1| phage integrase family protein [Paracoccus denitrificans PD1222]
 gi|119376439|gb|ABL71203.1| phage integrase family protein [Paracoccus denitrificans PD1222]
          Length = 393

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 56/317 (17%), Positives = 105/317 (33%), Gaps = 20/317 (6%)

Query: 25  FRKGHGRR---IRLPYPHESTFIP----AYMSALTGSTPKREYINSPRKKPTTLKWLISE 77
           +R G   R   I L               Y+S +          +  +  P T+K     
Sbjct: 45  YRAGGRSRRVNIGLHGAMTPEMARTEAMKYLSDVRLGADPAGERDRRKASP-TIKEFSKR 103

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRSGVESRKHTPSSAIQF 136
           +           ++   +E   D  I  + G      IT   +    +S +H P  A + 
Sbjct: 104 FLSDHVALHCKASTYGEYERSIDLFINPRFGSHRIIDITRADVVGLHQSMRHIPYQANRT 163

Query: 137 LTSMRVLFKWAVRQEYVAI--NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ--- 191
           L  + V+F  A          NPC  V+R + +    R  T +++ +        ++   
Sbjct: 164 LGVLSVMFTVAHAWGVRTDGVNPCWKVKRYREEKRE-RYLTPDELARLGKVLDCATEEPE 222

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTP 249
                  LL +G R S+      +++   N +  +   KTG  + V +    +K+L   P
Sbjct: 223 AANCIRLLLLTGCRLSEIQTLKWRYVDYRNGLLRLPDSKTGAKL-VPIGKAAIKVLKTIP 281

Query: 250 -IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHEL 307
            I    + I    +  + T     ++    +AG++    H +R   A+ +   G     +
Sbjct: 282 KIDGNPYVITGRMEGQHLTDMQKPWRRLRKRAGLDDLRIHDLRHSFASDALQLGQDLTMI 341

Query: 308 MATYGWKTVDQAETYTK 324
               G   V     Y  
Sbjct: 342 GRLLGHTQVQTTARYAH 358


>gi|50843000|ref|YP_056227.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           KPA171202]
 gi|50840602|gb|AAT83269.1| integrase/recombinase [Propionibacterium acnes KPA171202]
 gi|313763561|gb|EFS34925.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL013PA1]
 gi|313793954|gb|EFS41978.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL110PA1]
 gi|313801341|gb|EFS42592.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL110PA2]
 gi|313816741|gb|EFS54455.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL059PA1]
 gi|313829428|gb|EFS67142.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL063PA2]
 gi|313839938|gb|EFS77652.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL086PA1]
 gi|314914715|gb|EFS78546.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL005PA4]
 gi|314919323|gb|EFS83154.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL050PA1]
 gi|314920767|gb|EFS84598.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL050PA3]
 gi|314930647|gb|EFS94478.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL067PA1]
 gi|314954397|gb|EFS98803.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL027PA1]
 gi|314957518|gb|EFT01621.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL002PA1]
 gi|314963694|gb|EFT07794.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL082PA1]
 gi|314968478|gb|EFT12576.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL037PA1]
 gi|315079544|gb|EFT51537.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL053PA2]
 gi|315099188|gb|EFT71164.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL059PA2]
 gi|315100329|gb|EFT72305.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL046PA1]
 gi|315106859|gb|EFT78835.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL030PA1]
 gi|315108987|gb|EFT80963.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL030PA2]
 gi|327452023|gb|EGE98677.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL092PA1]
 gi|327454940|gb|EGF01595.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL087PA3]
 gi|327457774|gb|EGF04429.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL083PA2]
 gi|328755227|gb|EGF68843.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL087PA1]
 gi|328758294|gb|EGF71910.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL025PA2]
          Length = 315

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 43/284 (15%), Positives = 96/284 (33%), Gaps = 27/284 (9%)

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVE 124
           P +L   + ++         + N+   + +    +       GD    +I T  +R+ + 
Sbjct: 15  PMSLTVPVEDFCGHLSALRRSPNTIRGYRADLIDLMGHAHSHGDDTLGRIGTSQVRAWLA 74

Query: 125 SRKHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI---------R 172
             +   +SA    +  ++ RV F+WA  +  ++ +P  ++   K                
Sbjct: 75  DTRVAGASAATMQRRWSAARVFFRWAANEGLISADPTTALNSAKVPKRLPATLGVDQARH 134

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGT 231
              +   Q        G++     E L   GLR  + C   +  +  +  ++K T K   
Sbjct: 135 ILDEAVAQARHDESPHGARDAAILEVLYGGGLRVGELCGLDLGDVDRSRRTVKVTGKGDK 194

Query: 232 IITVELPDGFMKLLAMT---------PIGKETFFINNDKQKMNATQFSIWFK--AKATKA 280
             TV +    ++ +            P   +  F+    ++++            +A   
Sbjct: 195 ERTVPMGAPALRAIDTWLPRREEWVGPHSGQALFLGARGRRIDQRVVRRVVHTDLRAEPD 254

Query: 281 GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             +   HG+R   AT   + GA    +    G +++   + YT 
Sbjct: 255 SPDLGPHGLRHAMATHLLEGGADLRTVQDILGHESLATTQIYTH 298


>gi|149908948|ref|ZP_01897607.1| site-specific recombinase, phage integrase family [Moritella sp.
           PE36]
 gi|149807959|gb|EDM67902.1| site-specific recombinase, phage integrase family [Moritella sp.
           PE36]
          Length = 288

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 46/267 (17%), Positives = 95/267 (35%), Gaps = 21/267 (7%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR---SGVESRKH 128
           + L+ ++ +       +  +R S+    +Q+ +  G      I+ K +      +   KH
Sbjct: 2   RQLLQQFNEEITLRGYSERTRNSYRYAINQLYKYFGQ-PLDTISDKQLEMYFRYLNLEKH 60

Query: 129 TPSSAIQF-LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              + ++  L  +  LF+  + + +      +SV  PKRK +  +  T++D+     +  
Sbjct: 61  HCRATLKLHLNGIHFLFEHVLHRSF-----TISVCLPKRKEKLPQLLTQQDISAVIYYCK 115

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLL 245
                R         GLR S+     V  +      +K    K      V +    ++ +
Sbjct: 116 TNKH-RAMVALCYGCGLRVSELTHVKVSDIDGQRQLLKVCQGKGAKDRLVIISPVLLQFM 174

Query: 246 AM--TPIGKETFFINNDKQ----KMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS 297
                    +T+   +        ++ + F       A KAG+    S H +R   AT  
Sbjct: 175 RQYWQQYHPDTWLFGSRWHGVIYPIHESTFRKGLTCAAKKAGITKPCSPHSLRHAYATHQ 234

Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324
             AG   ++L    G +++   E Y  
Sbjct: 235 LQAGMPLNQLQQQLGHQSIQSTERYLH 261


>gi|313884807|ref|ZP_07818559.1| putative tyrosine recombinase XerC [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312619498|gb|EFR30935.1| putative tyrosine recombinase XerC [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 304

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 43/265 (16%), Positives = 92/265 (34%), Gaps = 26/265 (9%)

Query: 85  GSLAVNSRISFESYFD---QIIRKSGDFDYRKI---TTKHIRSGVESRKHTPSSAIQFLT 138
              +  +  +++         +  SG+   + I     +   + +  ++ + +S  + L+
Sbjct: 16  KRYSPLTAQAYQRDLKEFAHFLASSGNDQVQSISYYDIRLFIAFLNEKRLSRTSIARKLS 75

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF-----KSFWSEGSQPR 193
           ++R  FK+   +  +  NP   V    +K      + +++MQ       +S      + +
Sbjct: 76  TLRSFFKFMQVETKLDQNPMDLVNYQVKKQRLPDFFYEDEMQALLKAAAESEHPLALRNQ 135

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDG-----------F 241
              E L  SGLR S+     +  +      ++    G     V + D             
Sbjct: 136 AILEVLYASGLRVSECRLLELGQVDFLAQVLRVHGKGNKERIVPMSDSASQTMQDYIKYL 195

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISAD 299
              L +T   K+  F++N  + +   Q S        +  +N S   H +R   AT   +
Sbjct: 196 RPKLDVTGQAKQ-VFLSNKGKTLTTRQVSQILNEIVAEGALNLSIHPHKLRHTFATHLLN 254

Query: 300 AGATAHELMATYGWKTVDQAETYTK 324
            GA    +    G   +   + YT 
Sbjct: 255 NGADLRSVQEMLGHADLSSTQIYTH 279


>gi|289672837|ref|ZP_06493727.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           syringae FF5]
 gi|330900733|gb|EGH32152.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           japonica str. M301072PT]
 gi|330941149|gb|EGH44028.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           pisi str. 1704B]
 gi|330976605|gb|EGH76649.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           aptata str. DSM 50252]
          Length = 299

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 37/259 (14%), Positives = 93/259 (35%), Gaps = 19/259 (7%)

Query: 85  GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIR---SGVESRKHTPSSAIQFLT 138
             ++ ++  ++     ++    +K+    +  +  +H+R   +    +  +  S  + L+
Sbjct: 16  RQVSPHTLEAYRRDLGKVLAYCQKAQLSSWSDLDIQHLRSFTARQHQQGQSSRSLARMLS 75

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRL 194
           ++R  +K+  R+     +P   +  PK +    +    +   Q      E      + + 
Sbjct: 76  AVRGFYKYLNREGICQHDPANGLSPPKGERRLPKTLDTDRTAQLLDGGVEDDFLAHRDQA 135

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV--------ELPDGFMKLLA 246
             E L  SGLR S+     +  L      ++    G+   V        +  + ++ L A
Sbjct: 136 ILELLYSSGLRLSELTGLNLDQLDLRDGLVQVLGKGSKTRVLPVGSKARQALEVWLPLRA 195

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAK-ATKAGVNKSAHGVRKFSATISADAGATAH 305
           +T    +  F++   +++      +  KA    + G N   H +R   A+   ++     
Sbjct: 196 LTHPQDDAVFVSQQGKRLGPRAIQVRLKAAGERELGQNLHPHMLRHSFASHLLESSQDLR 255

Query: 306 ELMATYGWKTVDQAETYTK 324
            +    G   +   + YT 
Sbjct: 256 AVQELLGHADIKTTQIYTH 274


>gi|260767555|ref|ZP_05876491.1| tyrosine recombinase XerC [Vibrio furnissii CIP 102972]
 gi|260617455|gb|EEX42638.1| tyrosine recombinase XerC [Vibrio furnissii CIP 102972]
 gi|315178748|gb|ADT85662.1| site-specific tyrosine recombinase [Vibrio furnissii NCTC 11218]
          Length = 309

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 39/287 (13%), Positives = 94/287 (32%), Gaps = 25/287 (8%)

Query: 61  INSPRKKPTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRK------ 113
           I+S    P +L   +  + +       L+++++ +++     + +        +      
Sbjct: 2   IDSATPLPDSLGRPLERFYEYLRSEKGLSLHTQRNYKQQLTTMAQHLNHMGLNQWQQVDA 61

Query: 114 --ITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
             +     +   +  K   SS    L+S+R  F + + +  +  NP   V  P++K    
Sbjct: 62  GWVRQLASKGMRDGMKA--SSLATRLSSLRSFFDFLILRGELNANPAKGVSAPRKKRPLP 119

Query: 172 RPWTKEDMQQFKSF---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
           +    ++M Q            + R   E +  +GLR ++     V+ +  +   I+   
Sbjct: 120 KNLDVDEMAQLLEVNEDDPLSIRDRAMMELMYGAGLRLAELVAINVRDVSLSAGEIRVIG 179

Query: 229 TGTIITV---------ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK 279
            G               +        ++    +   FI+    +++             K
Sbjct: 180 KGNKERKAPFAGQAKEWVGKWLKVRSSLLKGDEPALFISQLGARISHRNVQKRMAEWGHK 239

Query: 280 AGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             V  + S H +R   AT   ++      +    G + +   + YT 
Sbjct: 240 QSVASHISPHKLRHSFATHMLESSNNLRAVQELLGHENISTTQIYTH 286


>gi|116872710|ref|YP_849491.1| integrase/recombinase XerC [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|123463735|sp|A0AI80|XERC_LISW6 RecName: Full=Tyrosine recombinase xerC
 gi|116741588|emb|CAK20712.1| integrase/recombinase XerC [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 300

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 40/272 (14%), Positives = 99/272 (36%), Gaps = 27/272 (9%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK------ITTKHIRSGVESRKHTPS 131
           Y  S    + +VN+  ++E+      R   +    +      +  +   + ++ +  + +
Sbjct: 14  YLHSER--NYSVNTSTAYENDILDFRRFLNEQAISEYQQVTFLDVRIYLTELKQKSFSRT 71

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-----FKSFW 186
           +  + ++S+R  + + +R+  ++ NP   V   K +    + +  E+M+      ++   
Sbjct: 72  TVARKISSLRSFYTFLLRENVISENPFTYVSHAKNQLRLPKFFYSEEMEALFQVVYEDNE 131

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVE--------L 237
           +   + R+  E L  +G+R S+     +  L  +  +I    K      V         +
Sbjct: 132 TLTLRDRVLLEVLYGTGIRVSECAGILLSDLDTSYQAILIRGKGNKERYVPFGAYAEDAI 191

Query: 238 PDGFM---KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKF 292
            D      +L+       ++  IN+    +             +KA + +    H +R  
Sbjct: 192 TDYLSSRTELMIRFKKEHDSLLINHYGDPLTTRGIRYCLTKIISKASLTRKIHPHMLRHT 251

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324
            AT   + GA    +    G  ++   + YT 
Sbjct: 252 FATDLLNNGADMRTVQELLGHASLSSTQIYTH 283


>gi|289596337|ref|YP_003483033.1| integrase family protein [Aciduliprofundum boonei T469]
 gi|289534124|gb|ADD08471.1| integrase family protein [Aciduliprofundum boonei T469]
          Length = 284

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 47/265 (17%), Positives = 95/265 (35%), Gaps = 19/265 (7%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----SRKHTP 130
           + ++++       + N+   +  +   ++R         IT   +          RK++ 
Sbjct: 13  LEKFKEYLRGEKRSENTIKEYAHFISDMLRYF-HKRAEDITPGDLNKYKMYLSTKRKYSK 71

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           +S      ++R  FK+        ++   ++  PKR  +  +  +++++++     SE  
Sbjct: 72  NSLYLATKAIRSYFKY------KNLDTAKNLSSPKRPRQMPKYLSEDEVKRLIEASSENP 125

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPD----GFMKL 244
           +       L YSGLR S+ C   ++ +     I  + + K      V +           
Sbjct: 126 RDYAIISLLAYSGLRVSELCNLKIEDVDFNERIVYVHSGKGDKDRIVVVSPRVIEALQNY 185

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302
           L       E  F +    K++  Q     K  A KAG+ K  + H +R   AT     G 
Sbjct: 186 LYTREDDMEYLFASQKSNKISRVQVFRIVKKYAEKAGIKKEVTPHVLRHTLATTLLRRGV 245

Query: 303 TAHELMATYGWKTVDQAETYTKGAD 327
               +    G  +V   + YT   D
Sbjct: 246 DIRFIQQFLGHSSVATTQIYTHVDD 270


>gi|289426394|ref|ZP_06428137.1| phage integrase, N-terminal SAM domain protein [Propionibacterium
           acnes SK187]
 gi|289153122|gb|EFD01840.1| phage integrase, N-terminal SAM domain protein [Propionibacterium
           acnes SK187]
 gi|313773500|gb|EFS39466.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL074PA1]
 gi|313807979|gb|EFS46460.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL087PA2]
 gi|313811552|gb|EFS49266.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL083PA1]
 gi|313819548|gb|EFS57262.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL046PA2]
 gi|313822129|gb|EFS59843.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL036PA1]
 gi|313823637|gb|EFS61351.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL036PA2]
 gi|313825961|gb|EFS63675.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL063PA1]
 gi|313831292|gb|EFS69006.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL007PA1]
 gi|313834903|gb|EFS72617.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL056PA1]
 gi|314924714|gb|EFS88545.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL036PA3]
 gi|314962115|gb|EFT06216.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL002PA2]
 gi|314974168|gb|EFT18264.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL053PA1]
 gi|314976542|gb|EFT20637.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL045PA1]
 gi|314979003|gb|EFT23097.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL072PA2]
 gi|314984361|gb|EFT28453.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL005PA1]
 gi|314986551|gb|EFT30643.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL005PA2]
 gi|314990910|gb|EFT35001.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL005PA3]
 gi|315081228|gb|EFT53204.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL078PA1]
 gi|315083594|gb|EFT55570.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL027PA2]
 gi|315087111|gb|EFT59087.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL002PA3]
 gi|315095307|gb|EFT67283.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL038PA1]
 gi|327328430|gb|EGE70192.1| putative tyrosine recombinase XerC [Propionibacterium acnes
           HL096PA2]
 gi|327329704|gb|EGE71460.1| putative tyrosine recombinase XerC [Propionibacterium acnes
           HL096PA3]
 gi|327444217|gb|EGE90871.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL043PA2]
 gi|327444904|gb|EGE91558.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL043PA1]
 gi|327446389|gb|EGE93043.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL013PA2]
 gi|328752379|gb|EGF65995.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL020PA1]
 gi|328760018|gb|EGF73600.1| putative tyrosine recombinase XerC [Propionibacterium acnes
           HL099PA1]
          Length = 315

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 43/284 (15%), Positives = 96/284 (33%), Gaps = 27/284 (9%)

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVE 124
           P +L   + ++         + N+   + +    +       GD    +I T  +R+ + 
Sbjct: 15  PMSLTVPVEDFCGHLSALRRSPNTIRGYRADLIDLMGHAHSHGDDTLGRIGTSQVRAWLA 74

Query: 125 SRKHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI---------R 172
             +   +SA    +  ++ RV F+WA  +  ++ +P  ++   K                
Sbjct: 75  DTRVAGASAATMQRRWSAARVFFRWAANEGLISADPTTALNSAKVPKRLPATLGVDQARH 134

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGT 231
              +   Q        G++     E L   GLR  + C   +  +  +  ++K T K   
Sbjct: 135 ILDEAVAQARHDESPHGARDAAILEVLYGGGLRVGELCGLDLGDVDRSRRTVKVTGKGDK 194

Query: 232 IITVELPDGFMKLLAMT---------PIGKETFFINNDKQKMNATQFSIWFK--AKATKA 280
             TV +    ++ +            P   +  F+    ++++            +A   
Sbjct: 195 ERTVPMGAPALRAIDTWLPRREEWVGPHSGQALFLGARGRRIDQRVVRRVVHTHLRAEPD 254

Query: 281 GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             +   HG+R   AT   + GA    +    G +++   + YT 
Sbjct: 255 SPDLGPHGLRHAMATHLLEGGADLRTVQDILGHESLATTQIYTH 298


>gi|56696516|ref|YP_166873.1| tyrosine recombinase XerD [Ruegeria pomeroyi DSS-3]
 gi|56678253|gb|AAV94919.1| tyrosine recombinase XerD [Ruegeria pomeroyi DSS-3]
          Length = 319

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 43/272 (15%), Positives = 90/272 (33%), Gaps = 32/272 (11%)

Query: 88  AVNSRISFESYF----DQIIRKSGDFD-YRKITTKHIRSGVESRKHTPSSAIQFLTSMRV 142
           A N+ +++        D + R+    +   + T +      +++    ++  + L++++ 
Sbjct: 26  ANNTLLAYGRDLKDFTDWLERRGATLNGAERDTVEAYLVDCDAQGLARATRARRLSAIKQ 85

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-------SEGSQPRLA 195
           L+++A  + + A NP + ++ P R     +     ++ +            ++  +    
Sbjct: 86  LYRFAFDEGWRADNPAIQIKGPGRLKSLPKTLEVIEVDRLLEAARQTGRTSADRLRNTCL 145

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKLLAMT------ 248
            E L  +G+R S+         + +    +   K G    V L       LA        
Sbjct: 146 MELLYATGMRVSELVSLPATAARGDPRMLLVRGKGGKERMVPLSPPARAALAAWLTVRDA 205

Query: 249 ---------PIGKETFFINNDK-QKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSAT 295
                           F +  K   +   +F +  K  A   GV     + H +R   AT
Sbjct: 206 AEEDGARRGIARSPHLFPSRGKSGHLTRHRFYLLIKELAVAGGVSPDTVTPHTLRHAFAT 265

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGAD 327
                GA    +    G   V   E YT   D
Sbjct: 266 HLLANGADLRTIQTLLGHADVSTTEIYTHVLD 297


>gi|327404137|ref|YP_004344975.1| Tyrosine recombinase xerC [Fluviicola taffensis DSM 16823]
 gi|327319645|gb|AEA44137.1| Tyrosine recombinase xerC [Fluviicola taffensis DSM 16823]
          Length = 293

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 42/263 (15%), Positives = 99/263 (37%), Gaps = 27/263 (10%)

Query: 85  GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSG---VESRKHTPSSAIQFLT 138
              + ++ +++E   +Q           ++R++  + +R+    +     +  +  + ++
Sbjct: 15  KRYSKHTILAYEEDLNQFVSFSELKESVEWREVNYQLVRAWVVGLLESGQSNRTVSRKIS 74

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ--QFKSFWS---EGSQPR 193
            +R  FKW + +  +  NP L +  PK +    +   + ++   + +  +S   EG + R
Sbjct: 75  CLRSFFKWLINEGKIGENPMLRIRGPKVEKRLPQFVKQTEIDGARIEGLFSSNFEGVRDR 134

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM------ 247
           L FE    +G+R S+      + + +    +   K      + +     +++        
Sbjct: 135 LMFELFYQTGIRLSELIELKNKDVSSVSIKV-LGKRNKERIIPIGQELHEIILAYQSIKP 193

Query: 248 -TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NKSAHGVRKFSATISADAG 301
             P  +   F+  D +K++       ++   T  G       KS H +R   AT   + G
Sbjct: 194 GGPDSQILLFVKKDGRKLSPK---FVYRKINTYLGSVTNVQKKSPHILRHTFATHMLNNG 250

Query: 302 ATAHELMATYGWKTVDQAETYTK 324
           A    L    G   +   + YT 
Sbjct: 251 AGLETLKELLGHANLSATQVYTH 273


>gi|257896182|ref|ZP_05675835.1| phage integrase [Enterococcus faecium Com12]
 gi|293377182|ref|ZP_06623390.1| tyrosine recombinase XerC [Enterococcus faecium PC4.1]
 gi|257832747|gb|EEV59168.1| phage integrase [Enterococcus faecium Com12]
 gi|292644202|gb|EFF62304.1| tyrosine recombinase XerC [Enterococcus faecium PC4.1]
          Length = 301

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 47/281 (16%), Positives = 98/281 (34%), Gaps = 34/281 (12%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFE---SYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127
           L++LI E          +  ++ ++E    +F   + +SGD D  K     +R  + +  
Sbjct: 11  LRYLIVE-------RGYSEKTKEAYEEDILHFKHFLEESGDADLLKAEYFTVRVYLSALA 63

Query: 128 H-----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
                 + +S  + + S+R  +++ +++E +  NP   V   K+     R + + +MQ  
Sbjct: 64  DHRPSYSRNSISRKIASLRSFYQYLLKEEVIKENPFSYVHLKKKNLRLPRFFYENEMQAL 123

Query: 183 KSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVEL 237
                       + R   E L  SG+R S+     V  +  ++   +   K        L
Sbjct: 124 FDSVAGDSPLDLRNRALLEVLYGSGIRLSECSNLLVSDIDFDSEVMLIHGKGNKERYAPL 183

Query: 238 ------------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS 285
                        +G   L+       +  F+N+  + +  T           K+ ++  
Sbjct: 184 GSFAQDALQEYFTEGRQVLMTKYHEEHDIVFVNHHGKPITPTGIEYVLNQIIKKSSLDSD 243

Query: 286 --AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              H +R   AT   + GA    +    G   +   + Y  
Sbjct: 244 IHPHMLRHTFATHLLNNGADLRTVQELLGHANLSTTQIYAH 284


>gi|88855485|ref|ZP_01130149.1| tyrosine recombinase [marine actinobacterium PHSC20C1]
 gi|88815392|gb|EAR25250.1| tyrosine recombinase [marine actinobacterium PHSC20C1]
          Length = 311

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 44/265 (16%), Positives = 87/265 (32%), Gaps = 26/265 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRK---ITTKHIRSGVESRKHTP------SSAIQ 135
             L+ N+  ++    D  +    + D  +   IT   + +   S +  P      SS  +
Sbjct: 28  RGLSQNTLAAYRRDLDSYLGFLSERDLAEPSAITADDVAAFAHSLRVDPERPLAASSVAR 87

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQ 191
            L+++R L  + V +  V+ +    V  PK+     +  T E M    + ++       +
Sbjct: 88  MLSTVRGLHTFFVDESLVSDDVAHKVAIPKQTMRLPKAITIEQMSSVLASFAGDDVVSLR 147

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL------- 244
                E L  +G R S+     V  + +        K      V +              
Sbjct: 148 NTALLELLYATGARVSEVTALNVDDMIDGDVVRLLGKGNKQRIVPVGSFAQAAIEKYLVR 207

Query: 245 ----LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK--AGVNKSAHGVRKFSATISA 298
               L+         F+     +++     +  ++ A +   G++ S H  R   AT   
Sbjct: 208 SRPVLSAKGTATPALFLGARGARLSRQNVWLIIQSAAERVNLGLDISPHTFRHSFATHLL 267

Query: 299 DAGATAHELMATYGWKTVDQAETYT 323
             GA    +    G  +V   + YT
Sbjct: 268 SGGADVRVVQELLGHSSVATTQIYT 292


>gi|217964580|ref|YP_002350258.1| tyrosine recombinase XerC [Listeria monocytogenes HCC23]
 gi|254799346|sp|B8DG54|XERC_LISMH RecName: Full=Tyrosine recombinase xerC
 gi|217333850|gb|ACK39644.1| tyrosine recombinase XerC [Listeria monocytogenes HCC23]
 gi|307570856|emb|CAR84035.1| tyrosine integrase/recombinase [Listeria monocytogenes L99]
          Length = 300

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 40/283 (14%), Positives = 99/283 (34%), Gaps = 27/283 (9%)

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK------ITTKHIR 120
           +   L+    +Y  S    + +VN+  ++E+      R   +           +  +   
Sbjct: 3   QEGKLEQQFLDYLHSER--NYSVNTSTAYENDLLDFRRFLNEQAIETYQQVTFLDVRIYL 60

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
           + ++ +  + ++  + ++S+R  + + +R+  +A NP   V   K +    + +  E+M+
Sbjct: 61  TELKQKSFSRTTVARKISSLRSFYTFLLRENVIAENPFTYVSHAKNQLRLPKFFYSEEME 120

Query: 181 Q-----FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIIT 234
                 ++   +   + R+  E L  +G+R S+     +  L  +  +I    K      
Sbjct: 121 ALFQVVYEDNETLTLRDRVLLEVLYGTGIRVSECAGILLPDLDTSYQAILIRGKGNKERY 180

Query: 235 VEL-----------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
           V                  +L+       +   +N+    +             +KA + 
Sbjct: 181 VPFGVYAEDAITDYLPKRTELMTRYKKSHDALLVNHYGDPLTTRGIRYCLTKIISKASLT 240

Query: 284 KS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +    H +R   AT   + GA    +    G  ++   + YT 
Sbjct: 241 RKIHPHMLRHTFATDLLNNGADMRTVQELLGHASLASTQIYTH 283


>gi|73667280|ref|YP_303296.1| Phage integrase, N-terminal SAM- like [Ehrlichia canis str. Jake]
 gi|72394421|gb|AAZ68698.1| Phage integrase, N-terminal SAM- like protein [Ehrlichia canis str.
           Jake]
          Length = 310

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 44/268 (16%), Positives = 91/268 (33%), Gaps = 28/268 (10%)

Query: 85  GSLAVNSRISFESYFD--------QIIRKSGDFDYRKITTKHIRSGVESRKHT---PSSA 133
              +VN+  ++    +         ++R     D   I    +R     R        + 
Sbjct: 21  RRYSVNTVDAYVRDVNKFLGFLYTYVLRPVTLEDVVNIKVADLRKWFTFRYQANVEAITN 80

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS--- 190
            + L++++  F++  R   V       + RPK K+   +   +  ++   +++S      
Sbjct: 81  ARSLSALKNFFRYLSRTYDVDNQSIFCLSRPKLKSALPKTLGQFHIENIVNYYSLHDNWV 140

Query: 191 --QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP---DGFMKLL 245
             +       L   GLR S++     Q ++     I  +     I   LP   +   + +
Sbjct: 141 FKRDFAIIMLLYGCGLRISEAVGLKFQDVRTGEILITGKGNKERILPILPVVRNSLDEYI 200

Query: 246 AMTP-------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATI 296
              P       +G E  F+  + +K+  T F+   +    K G+    + H  R   AT 
Sbjct: 201 KFCPYHTKLNSVGNEYIFVGVNGKKLGRTYFANRIQKICEKIGLPDTTTPHVFRHSFATH 260

Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324
              +GA    +    G   +   + YT 
Sbjct: 261 LLLSGADIRSIQELLGHANLSTTQIYTH 288


>gi|83859702|ref|ZP_00953222.1| integrase/recombinase XerD [Oceanicaulis alexandrii HTCC2633]
 gi|83852061|gb|EAP89915.1| integrase/recombinase XerD [Oceanicaulis alexandrii HTCC2633]
          Length = 311

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 45/272 (16%), Positives = 93/272 (34%), Gaps = 32/272 (11%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
              A N+  ++    +   ++ G         +    +   S + S   +P++A + L++
Sbjct: 17  RGAARNTLDAYRRDLEDAAQRLGAHGTGLESAQTADVERFLSDLASDGLSPATAARRLSA 76

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-----EGSQPRL 194
           ++  +++ +++   A +P  ++  PK+     +  ++  ++            +G + R 
Sbjct: 77  LKRYYRFLLKEGLRADDPAKTLSGPKKPRPLPKVLSEGQVETLFDAADRIEGADGFRLRA 136

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGTIITVELPDG------------- 240
             E L   GLR S+     +          + T K G    V L D              
Sbjct: 137 LLELLYAGGLRVSELVTLPLAAFARSERCLVVTGKGGKERLVPLTDSAIRAVEAYKAVRA 196

Query: 241 --FMKLLAMTPIGKETFFI---NNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKF 292
                  A+T      +           +   +F+   KA +  AG++    S H +R  
Sbjct: 197 DHLPSRAAVTHAVASRYLFPSRTARDGHLTRERFAQLLKALSLAAGLDPQQVSPHVMRHA 256

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324
            AT     GA    + +  G   V   E YT 
Sbjct: 257 FATHLLANGADLRSVQSLLGHADVSTTEIYTH 288


>gi|258516839|ref|YP_003193061.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771]
 gi|257780544|gb|ACV64438.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771]
          Length = 381

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 53/362 (14%), Positives = 115/362 (31%), Gaps = 58/362 (16%)

Query: 15  RTRHGKII---YYFRKGHGRRIRLPYPHESTFI--PAYMSALTGSTPKREYINSPRKKPT 69
             + GK     Y   +G  R+ +     ES F       + L     + E       K  
Sbjct: 5   IVKRGKTYSIVYDINQGGKRKQK----WESGFKTKKEAEAILAQRINEIEKGTYINPKKD 60

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITT--------KHIR 120
           TL+  +  +  +     L+ ++   +E      +I   G+    K+          K + 
Sbjct: 61  TLEDYLIRWFDTHK-ADLSPSTARRYEGIIKQHLIPSLGNIPLAKLQPLQIQEFLSKELE 119

Query: 121 SGVESRKHT------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
            G +  K T       +S       +      AV  + ++ NP   V+ PK + + +   
Sbjct: 120 GGRQDNKKTVGAGLSAASVNYEYRVLHKALNQAVDWQLISRNPADLVKVPKPEKKDMVVL 179

Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKT------ 226
           +++D+ +  +   +     +     +Y+G+R  +   +  + +     I S++       
Sbjct: 180 SEQDIARLLNEIKDN-YLYIPTFLAIYTGMRLGEVLGSTWKDIDLNRGILSVRQASCQVK 238

Query: 227 -----------QKTGTIITVELP--DGFMKLLAMTPI----------GKETFFINNDKQK 263
                       K+   I +         +                          D + 
Sbjct: 239 ADDPEFKAPKTAKSKRNIDISQTVVKTLREHKKTQTKWKLVAGSNWQDNNLVCALQDGRP 298

Query: 264 MNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETY 322
           +N    S +F+  A++ G+  S H +R   A++   AG     +    G  T+    + Y
Sbjct: 299 INPPSLSSYFRRVASRIGLFVSFHALRHTHASLLLKAGIQPKIVQERLGHSTIAVTMDIY 358

Query: 323 TK 324
           + 
Sbjct: 359 SH 360


>gi|297182869|gb|ADI19020.1| site-specific recombinase xerd [uncultured alpha proteobacterium
           HF0070_05I22]
          Length = 314

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 44/267 (16%), Positives = 86/267 (32%), Gaps = 28/267 (10%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
            +++ N+  ++        +          D      + + S    R  +  S  + L++
Sbjct: 27  RAVSANTLAAYRRDLADTSQLLHASKTTLTDCNADDLRQVISLWHQRGLSARSVARRLSA 86

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW------SEGSQPR 193
           +R    WAV  +    NPC  ++ P       +  +++++ +  +        +   +  
Sbjct: 87  LRQFMGWAVDDQIRTDNPCRWIDNPSLPALLPKSLSEDEVMKLLAAANAMQPPALSCRAV 146

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGFMKLLAMTPIGK 252
              E L  +GLR S+     V   +    SI    K G    V L     +  A     +
Sbjct: 147 AMLEILYATGLRVSELVHLQVSQFRRQPDSILVAGKGGRERLVPLGLAAKRAAADWLELR 206

Query: 253 ETFF-------------INNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATI 296
           +  F                    M   +F+   K  A  A ++    + H +R   AT 
Sbjct: 207 DATFGYLLSDYMFPGVSSTAAGGAMTRHEFAQLLKTIAVAAQIDPRRVTPHKIRHSFATH 266

Query: 297 SADAGATAHELMATYGWKTVDQAETYT 323
             + GA    L    G   +   + YT
Sbjct: 267 MLNRGADLRSLQNMLGHADIATTQIYT 293


>gi|187929673|ref|YP_001900160.1| integrase family protein [Ralstonia pickettii 12J]
 gi|221067672|ref|ZP_03543777.1| integrase family protein [Comamonas testosteroni KF-1]
 gi|187726563|gb|ACD27728.1| integrase family protein [Ralstonia pickettii 12J]
 gi|220712695|gb|EED68063.1| integrase family protein [Comamonas testosteroni KF-1]
          Length = 399

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 56/320 (17%), Positives = 115/320 (35%), Gaps = 26/320 (8%)

Query: 45  PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-II 103
             +++ +           + R  P T+K L +++ +         +++  +++  D+ I+
Sbjct: 75  QEWLAEVRRGGDPSAAKAAARSAP-TVKELCTKFMEDYSKQRNKPSTQRGYQAVIDRCIV 133

Query: 104 RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA--INPCLSV 161
              G    + +    + + ++   H P+ A +  + MR +F  A    +     NPC  V
Sbjct: 134 PMLGRLKVQDVKRPDVATAMKKMAHKPAEANRAFSVMRKMFNLAEVWGHRPDGTNPCRHV 193

Query: 162 ERPKRKTEGIRPWTKEDM----QQFKSFWSEGSQPR---LAFEFLLYSGLRCSDSCRAGV 214
                  +     + EDM    ++ +   +EG +     LA         R S+      
Sbjct: 194 PM-YPNGKATHLISDEDMGKLFRRLEHIEAEGLENYVIPLAIRLQFEFAGRRSEIVTLRW 252

Query: 215 Q--HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI----NNDKQKM-NAT 267
               L N        KTG +    + +   +LL+  P  + T ++    ++  + +    
Sbjct: 253 DWVDLDNRRVVWPDSKTGGMSK-PMSEEAYRLLSTAPRQEGTPYVLPSPSHPGKHLTTGE 311

Query: 268 QFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
            +  W +A       +   HG+R  SAT  A++G      MA    KTV     Y    D
Sbjct: 312 YYGGWSRALKAAGATHVGTHGIRHRSATDIANSGIPVKVGMALTAHKTVAMFMRYVHTED 371

Query: 328 RIRLGIKNSRRISSVVDSDD 347
                    R+ + +V +  
Sbjct: 372 ------DPVRKAAELVANRR 385


>gi|126173818|ref|YP_001049967.1| phage integrase family protein [Shewanella baltica OS155]
 gi|125997023|gb|ABN61098.1| phage integrase family protein [Shewanella baltica OS155]
          Length = 376

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 59/319 (18%), Positives = 108/319 (33%), Gaps = 17/319 (5%)

Query: 23  YYFR---KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYR 79
           YY R   +G  +   +   ++ T   A + A       R  +        TL     E+ 
Sbjct: 43  YYVRFQYQGLRQLHVIGNANDITLDDARLEARKQIDALRYGVVREPAPSLTLCAFAEEFF 102

Query: 80  KSAHWGS-LAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFL 137
               +      ++ ++ +  F   I    GD     +T +HI    +    +   A + L
Sbjct: 103 --PRYARHWKPSTLLNSQRGFTRHIAPVLGDVPLAALTRQHIEQWFDGMHASKGMANRLL 160

Query: 138 TSMRVLFKWAVRQEY--VAINPCLSVERPKRKTEGIRPWTKEDMQ----QFKSFWSEGSQ 191
             + V+ + A   EY     NPC   +R K  T   R  ++E+++       S       
Sbjct: 161 PLLSVMMQQAEVYEYRPAQSNPCKGFKRYK-STHSERYLSEEELKRLWLALDSHEKASPV 219

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251
             +    L+ +G RC++ C       +   + +   KTG   TV L     +LL+  P  
Sbjct: 220 AVMVLRLLILTGCRCNEVCSVKWADYRQGHWYLPDSKTGAK-TVFLSSFARELLSDWPQV 278

Query: 252 KETFFINND-KQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMA 309
            E  F +    Q         +++       + +   H +R   A+I+         +  
Sbjct: 279 SEHIFWHQSPSQPFTPACLDRFWRPFRETIHLNDVRIHDLRHTYASIAVKYNINILTIGR 338

Query: 310 TYGWKTVDQAETYTKGADR 328
             G    +    YT  A R
Sbjct: 339 LLGHALPETTLKYTHLAKR 357


>gi|299820311|gb|ADJ54321.1| integrase [archaeon enrichment culture clone 1(2010)]
          Length = 282

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 52/271 (19%), Positives = 95/271 (35%), Gaps = 19/271 (7%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHTPS 131
           +  Y  S      +  +  ++ S   + I      G    R       R  +E  K    
Sbjct: 9   LEGYLGSLKARGRSERTLKTYRSILTRFIDYLAVNGLTPDRVTEQDIDRFMLELSKMGWD 68

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
                 T    +  +    +Y+  N  ++   PKR     +  T+E++ +      +   
Sbjct: 69  Q-NSLFTVAVAVRSFL---KYLGRN--VNYPLPKRPKMLPKYLTREELTRLLGACQD-DY 121

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFMKLLAMTPI 250
            +L    LL +G+R S+     V  +  +  SI+    G     V   D  + LL     
Sbjct: 122 EKLIIGLLL-TGVRVSELVNIRVSDIDIDKRSIRVVGKGYKERVVFFADWLVPLLKRYLR 180

Query: 251 GKETFFIN----NDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATA 304
             ++ ++     N  Q ++        K    +AG+NK  + H +R   AT+S  +G   
Sbjct: 181 QNKSEWLFPSEINPDQHVHYVTVERILKKIVKRAGINKKVTPHTLRHTFATLSLASGLDI 240

Query: 305 HELMATYGWKTVDQAETYTKGADRIRLGIKN 335
            E+    G  ++   + YT   D  RL  K 
Sbjct: 241 REIQELLGHSSLSSTQIYTH-VDPQRLKQKT 270


>gi|116511440|ref|YP_808656.1| integrase-recombinase [Lactococcus lactis subsp. cremoris SK11]
 gi|116107094|gb|ABJ72234.1| Integrase [Lactococcus lactis subsp. cremoris SK11]
          Length = 311

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 95/302 (31%), Gaps = 36/302 (11%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS-----GDFDYRKITTKHIR---SG 122
            + L+ EY      G+ +  +  ++  + D+ I         + D   I   H +   S 
Sbjct: 3   FEKLVKEYLLELKLGNYSKETMETYRQHIDKFIDFYKKEISNEMDIYAINKIHYKLFISQ 62

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           +       +     L S +  + + +R++ +  +P  S++  K   + +  +  ++++  
Sbjct: 63  LLDNSLRATYINAILKSNKAFYSYLIREQVLKTSPMDSIKLLKETKQALTTFNDDEVKAM 122

Query: 183 KSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
            + W+  +    + +     L  +G+R S+        L +    +   K      V + 
Sbjct: 123 LNVWNFNTYLNARNKCIIAVLADTGIRISELINIKDSDLTDQYIRV-LGKGDKWRVVPIS 181

Query: 239 DGFMKLLAMTPI-GKETF--FINNDKQ-------------KMNATQFSIWFKAKA----- 277
           +    LL          F    N + +               +    +      A     
Sbjct: 182 NELNYLLTKYKRLRDNHFNKIRNRNGKVRELDSELFLGKTGRSIKTITNIEVMIAQTGLQ 241

Query: 278 --TKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335
              +A V  S H  R +    S + G     +    G   +   + Y +     +L  K 
Sbjct: 242 ANVRASVRCSPHQFRHYWTCKSLELGQDIFTISKLLGHTNLSTTQIYLQKLTNEQLISKA 301

Query: 336 SR 337
            +
Sbjct: 302 VK 303


>gi|325288106|ref|YP_004263896.1| integrase family protein [Cellulophaga lytica DSM 7489]
 gi|324323560|gb|ADY31025.1| integrase family protein [Cellulophaga lytica DSM 7489]
          Length = 364

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 45/257 (17%), Positives = 84/257 (32%), Gaps = 23/257 (8%)

Query: 97  SYFDQIIRKSGDFDYRKITTKHIRS----------GVESRKHTPSSAIQFLTSMRVLFKW 146
            +  +      D  ++ I    +            G   ++ + +S   +        K 
Sbjct: 109 KHLKKFCPT--DVSFQDIDKSFVERFKEYLDKEAIGRAGKQLSQNSKYSYYGKFSAALKQ 166

Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRC 206
           AV+   + +NP   VE  K+        T +++Q+  +   E    + AF F   +GLR 
Sbjct: 167 AVKDGILKVNPANGVEYFKQGEPQREFLTLDELQKAVNTECELPILKNAFIFSALTGLRW 226

Query: 207 SDSCRAGVQHL-----QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK 261
           SD  +     +            + +KT  + T+ + D    LL       +  F     
Sbjct: 227 SDIEKLIWSEIQHSKEMGYYIRFRQKKTKGVETLPISDQARNLLGEKGNPDDKVFDGLHY 286

Query: 262 QKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQA 319
              +  +   W       AG+ K+   H  R   AT+    G   + +    G K +   
Sbjct: 287 SAWSNLKLQQWMMK----AGITKTITFHCARHTYATLQLTLGTDIYTVSKLLGHKELRTT 342

Query: 320 ETYTKGADRIRLGIKNS 336
           + Y K  D  +    N 
Sbjct: 343 QIYAKVIDDKKKEAANR 359


>gi|325982877|ref|YP_004295279.1| tyrosine recombinase XerC [Nitrosomonas sp. AL212]
 gi|325532396|gb|ADZ27117.1| tyrosine recombinase XerC [Nitrosomonas sp. AL212]
          Length = 297

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 39/267 (14%), Positives = 91/267 (34%), Gaps = 18/267 (6%)

Query: 76  SEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES---RKHTPS 131
             Y     +   L+  +  S+      ++   G  D  ++ + +IR  +     +     
Sbjct: 10  VAYIDHLAYERRLSPLTCKSYARDIRVLLEHLGTDDLAQVQSPNIRQAIAQLHGKGLGGR 69

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG-- 189
           S  + L++    + + +R+     NPC +V  PK   +     + ++  +   F  E   
Sbjct: 70  SLARMLSAWCGFYNFLIRKHGFQHNPCYAVRVPKSPQKLPHALSPDEATRLLQFPVENIL 129

Query: 190 -SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE--------LPD 239
            ++    FE    SGLR ++      + +     +I+   K G    V         +  
Sbjct: 130 LARDSAMFELFYSSGLRLAELTHLRPEDVHFAEGTIRVLGKGGKARIVPVGEYALHSITT 189

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS 297
                L +        F++     ++    +   K++A + G+++    H +R   A+  
Sbjct: 190 WLALRLQIIKPNVTALFLSRRGDAISMRAIAYRLKSRARQQGLHQNVHPHVLRHSFASHV 249

Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324
             +      +    G   +   + YT 
Sbjct: 250 LQSSGDLRAVQEMLGHAHITSTQVYTH 276


>gi|332093830|gb|EGI98884.1| integrase [Shigella boydii 5216-82]
          Length = 256

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 48/251 (19%), Positives = 89/251 (35%), Gaps = 19/251 (7%)

Query: 96  ESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--TPSSAIQFLTSMRVLFKWAVRQEYV 153
            S    I R   D     ITTK I + +         +SA    +++   F+ A+ + ++
Sbjct: 1   MSKIKAIRRGLPDAPLEDITTKEIAAMLNGYIDEGKAASAKLIRSTLSDAFREAIAEGHI 60

Query: 154 AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG 213
             NP  +    K +    R    E ++ +++  S     RLA E  + +G R  D C   
Sbjct: 61  TTNPVAATRAAKSEVRRSRLTADEYLKIYQAAESSPCWLRLAMELAVVTGQRVGDLCEMK 120

Query: 214 VQHLQNNIFSIKTQKTGTIITVE---------LPDGFMKLLAMTPIGKETFFINNDKQKM 264
              + +    ++  KTG  I +          +            +G ET   +  ++ +
Sbjct: 121 WSDIVDGYLYVEQSKTGVKIAIPTTLHVDALGISMKETLDKCKEILGGETIIASTRREPL 180

Query: 265 NATQFSIWFKAKATKAGV-----NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
           ++   S +F      +G+       + H +R  SA    +   +        G K+   A
Sbjct: 181 SSGTVSRYFMRARKASGLSFEGDPPTFHELRNLSA-RLYEKQISDKFAQHLLGHKSDTMA 239

Query: 320 ETYTKGADRIR 330
             Y    DR R
Sbjct: 240 SQY--RDDRGR 248


>gi|319785871|ref|YP_004145346.1| tyrosine recombinase XerC [Pseudoxanthomonas suwonensis 11-1]
 gi|317464383|gb|ADV26115.1| tyrosine recombinase XerC [Pseudoxanthomonas suwonensis 11-1]
          Length = 291

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 36/256 (14%), Positives = 91/256 (35%), Gaps = 16/256 (6%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGV---ESRKHTPSSAIQFLTS 139
            +++ ++  ++      +   + +   D  ++    +R  V     R  +P+S  + L++
Sbjct: 15  RAMSPHTLDAYRRDLQALQDWAFERGEDVVRMDGGRLREFVASEHRRGLSPTSLQRRLSA 74

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WSEGSQPRLAF 196
            R  + W ++   +  +P + +  P+   +  +    ++  Q          G + R   
Sbjct: 75  CRSYYAWLLKHGVIEASPAIGLRAPRAPRKLPQVLDVDEAVQLVEVDTSAPLGLRDRALL 134

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-ITVEL----PDGFMKLLAMTPIG 251
           E    SGLR S+ C    + L  +   +     G+   +V +         +  + T  G
Sbjct: 135 ELFYSSGLRLSELCALRWRDLHLDQGLVTVLGKGSRQRSVPVGSHARRALEEWRSSTGAG 194

Query: 252 KETF-FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELM 308
            + F F       ++     +  +  A + G+  +   H +R   A+   ++      + 
Sbjct: 195 SDDFVFPGRGGGPISQRAVQVRMRQLAARQGLFKHVHPHMLRHSFASHVLESSGDLRGVQ 254

Query: 309 ATYGWKTVDQAETYTK 324
              G   +   + YT 
Sbjct: 255 ELLGHADIATTQIYTH 270


>gi|71725244|ref|YP_272203.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. phaseolicola 1448A]
 gi|71558834|gb|AAZ38044.1| site-specific recombinase, phage integrase family [Pseudomonas
           syringae pv. phaseolicola 1448A]
          Length = 320

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 53/277 (19%), Positives = 105/277 (37%), Gaps = 32/277 (11%)

Query: 84  WGSLA-VNSRISFESYFDQIIRKSGDF---DYRKITTKHI---RSGVESRKHTPSSAIQF 136
           + +L    +R ++++         G     D+R++T  H+   R+ +E R    ++  + 
Sbjct: 33  FANLDNRRTRRAYQNDLTDFSSFIGLASADDFRQVTRSHVLAWRADLEQRGLAGATIRRK 92

Query: 137 LTSMRVLFKWAVRQE-YVAINPCLSVERPKRKT-EGIRPWTKED-----MQQFKSFWSEG 189
           L ++  LF   +        NP   V+RP+ ++ EG  P   +      ++       +G
Sbjct: 93  LAALASLFDHLLDNNAVAGGNPVHGVKRPRIESNEGKTPALGDHQAKALLEAPDESTLKG 152

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKT-QKTGTIITVELPDG------ 240
            + R     LLY GLR  ++ +  V  +  +  I  +K   K G +  + L         
Sbjct: 153 RRDRAMLAVLLYHGLRREEAAQLQVSDIQERRGIQHLKIHGKGGKVRYLPLHPVAAGRIH 212

Query: 241 --FMKLLAMTPIGKETFFINNDKQ----KMNATQFSIWFKAKATKAGV---NKSAHGVRK 291
               +        K   FI+   +     ++A       +A A KAG+       HG+R 
Sbjct: 213 LYLERSEHHLADRKVPLFISLRGKSTGAGVSANGIYTVVEAYAKKAGIEVAGLGVHGLRA 272

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
            +AT + +  A   ++    G   +     Y +  +R
Sbjct: 273 TAATNALEHEADIAKVQVWLGHANISTTRIYDRRQNR 309


>gi|314936587|ref|ZP_07843934.1| tyrosine recombinase XerC [Staphylococcus hominis subsp. hominis
           C80]
 gi|313655206|gb|EFS18951.1| tyrosine recombinase XerC [Staphylococcus hominis subsp. hominis
           C80]
          Length = 297

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 41/266 (15%), Positives = 97/266 (36%), Gaps = 22/266 (8%)

Query: 85  GSLAVNSRISFE---SYFDQIIRKSGDFDYRKITTKHIRSGVE---SRKHTPSSAIQFLT 138
            + + ++  ++    + F+Q + +    + R    K  R+ +    S     ++  + ++
Sbjct: 16  RNFSDHTLKAYHDDLAQFNQFLEQ-ELLNLRTFEYKDARNYLSYLYSNNLKRTTVSRKIS 74

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194
           ++R  +++ + Q+    NP + +  PK++    + + +E+M+   +       +G + R+
Sbjct: 75  TLRTFYEFWMTQDTSVNNPFIQLVHPKKEQYLPQFFYEEEMEALFNTVSNDAKKGLRDRV 134

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE--------LPDGFMKLL 245
             E L  +G+R S+     V  L  N+  +K   K      V         +     K  
Sbjct: 135 VIELLYATGIRVSELVNIKVMDLDMNLPGVKVLGKGNKERFVPFGEFCRQSIEQYLEKFK 194

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATK-AGV-NKSAHGVRKFSATISADAGAT 303
            +         +N     +              + AGV     H +R   AT   + GA 
Sbjct: 195 PLKSKSHPYLIVNMKGDPITERGIRYLLNDVVKRTAGVTEIHPHKLRHTFATHLLNQGAD 254

Query: 304 AHELMATYGWKTVDQAETYTKGADRI 329
              + +  G   +     YT  +++ 
Sbjct: 255 LRTVQSLLGHVNLSTTGKYTHVSNQQ 280


>gi|325107724|ref|YP_004268792.1| integrase family protein [Planctomyces brasiliensis DSM 5305]
 gi|324967992|gb|ADY58770.1| integrase family protein [Planctomyces brasiliensis DSM 5305]
          Length = 303

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 51/290 (17%), Positives = 94/290 (32%), Gaps = 29/290 (10%)

Query: 59  EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRI----SFESYFDQIIRKSGD-FDYRK 113
           E I   R +   L   +            A  SR         +       +G+ F+  +
Sbjct: 10  EGIRVGRAETGLLNAFLDA-------HDFADGSRRGFVLDLRKFAGWFAEANGERFEVGR 62

Query: 114 ITTKHIRSG----VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
           +TT+ I        + +    ++  + L ++R  F W   +  V++NP   V+  KR+  
Sbjct: 63  VTTRDITDFKTFLRKDKGQAVATINRSLVTLRRFFGWLAERGTVSLNPAKPVKELKRQQL 122

Query: 170 GIRPWTKEDMQQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNI----FS 223
             +   + ++++        +  R    F  +LY+G R SD     +  L         +
Sbjct: 123 APKGLDRTEVRKLLREIELRNDLRAGAIFSVMLYTGCRVSDLVTLELTDLMIGERKGSVT 182

Query: 224 IKTQKTGTIITVELPDGFMKLLAM-----TPIGKETFFINNDKQKMNATQFSIWFKAKAT 278
            +  K      V LP    + L        PI  +  F+      +            + 
Sbjct: 183 FRLGKGNKQRVVPLPLPARQSLRAYLDSRPPIPSDLVFVGERG-PLTDKGVRALCDKYSA 241

Query: 279 KAGVNKSAHGVRKFSA-TISADAGATAHELMATYGWKTVDQAETYTKGAD 327
             GV  + H  R   A    AD       L    G + ++    YT+  D
Sbjct: 242 IIGVKLTPHLFRHTMAHQFLADNENDLVGLAQILGHENLNTTARYTRRTD 291


>gi|291527524|emb|CBK93110.1| Site-specific recombinase XerD [Eubacterium rectale M104/1]
          Length = 306

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 42/283 (14%), Positives = 94/283 (33%), Gaps = 30/283 (10%)

Query: 71  LKWLISEYRKSAHWGS-LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RK 127
           L+ L   Y +       L   +  ++     Q   +       +ITT  +   +    ++
Sbjct: 4   LQTLTENYLEYCRTQKCLDEKTLKAYRIDLRQFSEEPSLEKIIEITTNDLEDYIARLHQQ 63

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQQF---- 182
           + P +  + + S++  F +   +E +AINP   ++   +  T   +      +++F    
Sbjct: 64  YKPKTVKRKIASIKAFFHYLEYKELLAINPFTKIQVHFREPTILPKIIPLHTVEKFLTMI 123

Query: 183 ---KSFWSEGSQPRLAF------EFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGT 231
              +       Q R A       E L  +G+R S+ C    + +   +    I   K   
Sbjct: 124 YTQRDNAKTNYQRRNALRDAAVSELLFATGMRISELCSLKNEDINLHDGSILI-YGKGDK 182

Query: 232 IITV--------ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
              +        ++ + +             FF N + + ++            + A ++
Sbjct: 183 ERRIHIGNDSVSKIIEEYKAEFQTEIRSCNHFFANQNGKPLSDQAVRRMINKYCSLADID 242

Query: 284 K--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              + H  R   AT   +A      +    G  +++  E YT 
Sbjct: 243 LHITPHMFRHTFATSLLEADVDIRYIQEMLGHSSINVTEIYTH 285


>gi|260892475|ref|YP_003238572.1| integrase family protein [Ammonifex degensii KC4]
 gi|260864616|gb|ACX51722.1| integrase family protein [Ammonifex degensii KC4]
          Length = 304

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 39/230 (16%), Positives = 79/230 (34%), Gaps = 23/230 (10%)

Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
           +     +  R  + ++  + L + R  F++  R+  +  +P   V  PKR+    R    
Sbjct: 59  RRFLGYLHERSLSRNTIARKLAAWRSFFRFLCREGILNADPLKLVSAPKREKRLPRVLYP 118

Query: 177 EDMQQFKSFWSEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
            + +   +   +G+     + R   E L  +GLR S+     +  +      ++    G 
Sbjct: 119 HEAEALVT-APKGTDPKAWRDRALLEVLYGAGLRVSEVEHLNLSDVDLERGELRVWGKGG 177

Query: 232 IITVELPDGFMKL---------------LAMTPIGKETFFINNDKQKMNATQFSIWFKAK 276
              + L                             +   F+N+  ++++A    +   + 
Sbjct: 178 KERIALLHPLAVAALKDYLERGRPLLLSRRSRGEEEPALFLNHRGERLSARGIRLIVTSY 237

Query: 277 ATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           A K GV    + H  R   AT   D GA    +    G K +   + YT+
Sbjct: 238 AAKTGVKGKVTPHTFRHSFATHLLDGGADLRTVQELLGHKRLATTQIYTR 287


>gi|322806105|emb|CBZ03672.1| tyrosine recombinase XerD [Clostridium botulinum H04402 065]
          Length = 205

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 73/197 (37%), Gaps = 16/197 (8%)

Query: 152 YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLAFEFLLYSGLRCSD 208
            V+ +P L  E PK +    +  + E++ +  +      +G + +   E +  +G++ ++
Sbjct: 1   MVSEDPTLGYEIPKIERTIPKILSVEEVDKLLNSPNSSKKGLRDKAMLELMYATGVKITE 60

Query: 209 SCRAGVQHLQNNIFSIKTQKTGTIITVELPDG------FMKLLAMTPIGK----ETFFIN 258
                +  +      IK + +     + +P G          L + P       +  F+N
Sbjct: 61  LLNLNIYDINLKFNYIKCRGSKKRERI-IPIGSYAIKCLKNYLEVRPAINVYNLDYLFLN 119

Query: 259 NDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTV 316
               +M    F    K  A +A ++K   ++ +R   A      GA    +    G K +
Sbjct: 120 LKGTQMTRQGFWKIIKFYAKEASIDKEIDSYTLRHSFAVHLLQNGADIKSVQELLGHKDL 179

Query: 317 DQAETYTKGADRIRLGI 333
              + Y+  + + ++  
Sbjct: 180 AATQIYSSISKKSKIAE 196


>gi|300692939|ref|YP_003753934.1| site-specific tyrosine recombinase [Ralstonia solanacearum PSI07]
 gi|299079999|emb|CBJ52674.1| site-specific tyrosine recombinase [Ralstonia solanacearum PSI07]
          Length = 329

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 52/290 (17%), Positives = 99/290 (34%), Gaps = 42/290 (14%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVESR-- 126
           I+ Y  +  +   L+ ++  S+      ++++ G       D  ++   HIR  +     
Sbjct: 20  IAAYLDTLKFERQLSQHTLASYAREL-AVLQQLGAQFAAGIDLMQLQPHHIRRMMAQLHG 78

Query: 127 -KHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQ 180
              +  S  + L++ R  ++W A+R   V  NP   V  PK   +  +  + E     M+
Sbjct: 79  GGLSGRSIARALSAWRGWYRWLALRDAAVTANPVDGVRAPKSPKKLPKALSVEQAVALME 138

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN------IFSIKTQ------K 228
           Q      E  + R   E     GLR S+     ++H++           + T+      K
Sbjct: 139 QLPGDDPETVRDRAVNELFYSCGLRLSELVGLDLRHVRAGDYESASWLDLDTREVMVLGK 198

Query: 229 TGTIITVELPDGFMKLL-------------AMTPIGKETFFINNDKQKMNATQFSIWFKA 275
                TV +     + L                P      F++   +++   Q  +  K 
Sbjct: 199 GSKRRTVPVGRKAAEALVAWLAARPQLARPDAAPEDAHALFLSARGKRLAQRQIQMRMKR 258

Query: 276 KATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
            A  AGV      H +R   AT    +      +    G  ++   + YT
Sbjct: 259 NAIAAGVPADVHPHVLRHSFATHMLQSSGDLRAVQELLGHASIASTQVYT 308


>gi|138894733|ref|YP_001125186.1| site-specific tyrosine recombinase XerC [Geobacillus
           thermodenitrificans NG80-2]
 gi|134266246|gb|ABO66441.1| Integrase/recombinase (XerC/CodV family) [Geobacillus
           thermodenitrificans NG80-2]
          Length = 309

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 44/284 (15%), Positives = 90/284 (31%), Gaps = 28/284 (9%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE------SR 126
            L  EY +     + +  + + +    +Q ++   +    ++                 +
Sbjct: 18  QLFLEYLQIE--KNYSQYTIVCYRRDIEQFLQFMNEEGIDELNEVAYSDVRLYLTKLYGQ 75

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185
           +    S  + ++S+R  +K+ +R+ + A NP      PK++ +      +E+++      
Sbjct: 76  QLASRSVARKISSLRSFYKFLLREGWTAENPFALAALPKKEQKIPNFLYREELEALFRVN 135

Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGF 241
               + G +     E L  +G R S+ C   +  L       +   K      V      
Sbjct: 136 DGNTAVGQRNAALLELLYATGARVSECCHIRLSDLDFAASTVLIHGKGNKQRYVPFGRPA 195

Query: 242 MKLLAM------------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAH 287
            + L               P      F+N     +               A +  N S H
Sbjct: 196 REALERYIGGGRRELVGKLPADHRYLFVNARGNPLTPRGVRYILDRIVETAALTQNISPH 255

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330
            +R   AT   + GA    +    G   +   + YT    DR+R
Sbjct: 256 VLRHTFATHLLNEGADLRSVQELLGHAHLSSTQVYTHVTKDRLR 299


>gi|74311311|ref|YP_309730.1| putative integrase fragment [Shigella sonnei Ss046]
 gi|73854788|gb|AAZ87495.1| putative integrase fragment [Shigella sonnei Ss046]
          Length = 270

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 46/259 (17%), Positives = 91/259 (35%), Gaps = 19/259 (7%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--TPSSAIQFLTSMRVLFK 145
              + I++ S    I R   D     ITTK I + +         +SA    +++   F+
Sbjct: 7   KQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAMLNGYIDEGKAASAKLIRSTLSDAFR 66

Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLR 205
            A+ + ++   P  +    K +    R    E ++ +++  S     RLA E  + +G R
Sbjct: 67  EAIAEGHITTKPVAATRAAKSEVRRSRLTADEYLKIYQTAESSPCWLRLAMELAVVTGQR 126

Query: 206 CSDSCRAGVQHLQNNIFSIKTQKTGTIITVE---------LPDGFMKLLAMTPIGKETFF 256
             D C      + +    ++  KTG  I +          +            +G ET  
Sbjct: 127 VGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTTLHVDALGISMKETLDKCKEILGGETII 186

Query: 257 INNDKQKMNATQFSIWFKAKATKAGV-----NKSAHGVRKFSATISADAGATAHELMATY 311
            +  ++ +++   S +F      +G+       + H +R   +    +   +        
Sbjct: 187 ASTRREPLSSGTVSRYFMRARKASGLSFEGDPPTFHELR-SLSARLYEKQISDKFAQHLL 245

Query: 312 GWKTVDQAETYTKGADRIR 330
           G K+   A  Y    DR R
Sbjct: 246 GHKSDTMASQY--RDDRGR 262


>gi|223938788|ref|ZP_03630676.1| integrase family protein [bacterium Ellin514]
 gi|223892486|gb|EEF58959.1| integrase family protein [bacterium Ellin514]
          Length = 306

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 44/287 (15%), Positives = 103/287 (35%), Gaps = 37/287 (12%)

Query: 74  LISEYRKS-AHWGSLAVNSRISFESYFDQII--RKSGDF-DYRKITTKHIRSGVE----- 124
           L+ ++ +   H    + +++ ++ +   + +   +     D++++  KH+ + +      
Sbjct: 4   LVEDFLQYLRHERGQSEHTQKTYAALLGKFLNWAQIQKLTDWKEVELKHLTAFLMFERER 63

Query: 125 ---------SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
                     RK +  S    + ++R  +K+A  ++ + +N   S+  P+R     +  +
Sbjct: 64  LVEVKEGQSPRKLSSESVYLEIAALRAFYKFAENEKILPLNIAESLSLPRRWKRLPKALS 123

Query: 176 KEDMQQFKSFWSEGSQ----PRLAFEFLLYSGLRCSDS--CRAGVQHLQNNIFSIKTQKT 229
             ++ Q  +     +      +   E    SGLR ++    R    HL+    ++  +  
Sbjct: 124 DLEITQLLTLEIPETPRTLGDQAVLELAYASGLRLAELRNIRMEQLHLEVGFINVIGKGN 183

Query: 230 GTIITVELPDGFMKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATK 279
              + V +    ++ L            TP      F+        A       K +  +
Sbjct: 184 KERV-VPVGSKAVQALQRYLESGRPKLVTPRSPANVFLTMRGTPFAAVTLWKRIKDRVKR 242

Query: 280 AGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +GV  N + H +R   AT   + GA    +    G   +   E YT 
Sbjct: 243 SGVARNVTPHMLRHSFATHLLEHGADLRVIQELLGHANISTTEIYTH 289


>gi|262163686|ref|ZP_06031427.1| tyrosine recombinase XerC [Vibrio mimicus VM223]
 gi|262027902|gb|EEY46566.1| tyrosine recombinase XerC [Vibrio mimicus VM223]
          Length = 310

 Score =  113 bits (282), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 34/268 (12%), Positives = 90/268 (33%), Gaps = 22/268 (8%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGV---ESRKHTP 130
            Y  S     L++ ++ +++   +   + + + G   + ++    +R  V   + +    
Sbjct: 22  AYLHSE--KGLSLYTQRNYKQQLETMARYLAQMGLTSWPQLDAAWVRQLVVLGKRQGMKA 79

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---S 187
           SS    L+S+R    + + +  +  NP   V  P+++    +    ++M Q         
Sbjct: 80  SSISTRLSSLRSFLDFLILRGELQANPAKGVSAPRKQRPLPKNLDVDEMAQLLEVTDDDP 139

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVE-------LP 238
              + R   E +  SGLR ++     ++ +  ++    +  +                + 
Sbjct: 140 LSIRDRAIMELMYGSGLRLAELVSIDMKDVNLRDGEIRVIGKGNKERKVWFAGQAQEWVG 199

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATI 296
                   +    +   F++    +++             K  V  + S H +R   AT 
Sbjct: 200 KWLKLRSQLANSDETALFVSKLGTRISHRSVQKRMAEWGQKQAVASHISPHKLRHSFATH 259

Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324
             ++      +    G + +   + YT 
Sbjct: 260 MLESSNNLRAVQELLGHENIATTQIYTH 287


>gi|154508823|ref|ZP_02044465.1| hypothetical protein ACTODO_01333 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798457|gb|EDN80877.1| hypothetical protein ACTODO_01333 [Actinomyces odontolyticus ATCC
           17982]
          Length = 315

 Score =  113 bits (282), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 43/289 (14%), Positives = 97/289 (33%), Gaps = 33/289 (11%)

Query: 69  TTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGVE 124
           T+L+ L+ ++          + ++  ++     +     +  G  +   I+ + I     
Sbjct: 2   TSLEALVRDWVDYLRVEKGASAHTVSNYRRDVARYAFDMKSRGKVNVEDISPRDIEDYTM 61

Query: 125 SRKHTP--------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
                         SS  +   ++R L K+A+ +  V  +    +  P++     +  + 
Sbjct: 62  RLASGRVTGTPAAASSVARASAAIRGLHKYALTEGAVGTDAAAQLHAPRQGRHLPKALSV 121

Query: 177 EDMQQFKSFW-----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKT-QK 228
           +++ +            G +     E L  +G R S++       L    ++  ++   K
Sbjct: 122 DEVGRLLDAAHADDSPIGLRDAALLELLYATGARVSEAVSLSADDLDLDGDVPVVRLFGK 181

Query: 229 TGTIITVELPD-----------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKA 277
                 V +                  LA    G   FF+N+    ++        +  A
Sbjct: 182 GRKERIVPVGSFAVDALYAYRVRARPALAARGRGSTAFFLNSRGGALSRQSAWTAIRRAA 241

Query: 278 TKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             A + +  S H +R   AT   + GA+  E+    G  +V   + YT+
Sbjct: 242 EAAQLGERVSPHTLRHSFATHLLEGGASVREVQELLGHASVATTQIYTQ 290


>gi|68171192|ref|ZP_00544598.1| Phage integrase:Phage integrase, N-terminal SAM-like [Ehrlichia
           chaffeensis str. Sapulpa]
 gi|88658398|ref|YP_507161.1| phage integrase family site specific recombinase [Ehrlichia
           chaffeensis str. Arkansas]
 gi|67999386|gb|EAM86029.1| Phage integrase:Phage integrase, N-terminal SAM-like [Ehrlichia
           chaffeensis str. Sapulpa]
 gi|88599855|gb|ABD45324.1| site-specific recombinase, phage integrase family [Ehrlichia
           chaffeensis str. Arkansas]
          Length = 311

 Score =  113 bits (282), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 43/269 (15%), Positives = 89/269 (33%), Gaps = 29/269 (10%)

Query: 85  GSLAVNSRISFESYFDQIIR--------KSGDFDYRKITTKHIRSGVESR---KHTPSSA 133
              A N+  S+    ++ I              D   +    +R     R        + 
Sbjct: 21  RRYATNTVDSYLRDVNKFIEFLYMCVLRPVTLEDIIGVKVADLRKWFAFRYQANIEAVTN 80

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS--- 190
            + L++++  F++  R   +       + RPK K+   R  T+  +Q+   +++      
Sbjct: 81  ARSLSALKNFFRYLSRTYNIDGQAVFCLSRPKLKSTLPRTLTQSHIQKIIDYYALLDTDW 140

Query: 191 ---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP---DGFMKL 244
              +       L   GLR S++     Q+++     I  +++   I   LP       + 
Sbjct: 141 IVKRDFALIVLLYGCGLRISEAVNLKFQNIRREELLIIGKRSKERILPILPIVRQSLDEY 200

Query: 245 LAMTP-------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSAT 295
           +   P       +  E  F+    +K+  T F+   +    + G+    + H  R   AT
Sbjct: 201 VRCCPYHMELNSVKNEYVFVGVRGKKLKRTYFANRIQKICKEIGLPDVITPHAFRHSFAT 260

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTK 324
                GA    +    G   +   + YT 
Sbjct: 261 HLFLGGADIRSIQELLGHANLSTTQIYTH 289


>gi|218263862|ref|ZP_03477831.1| hypothetical protein PRABACTJOHN_03521 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222461|gb|EEC95111.1| hypothetical protein PRABACTJOHN_03521 [Parabacteroides johnsonii
           DSM 18315]
          Length = 386

 Score =  113 bits (282), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 47/301 (15%), Positives = 103/301 (34%), Gaps = 26/301 (8%)

Query: 41  STFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSA-----HWGSLAVNSRISF 95
           + F+  Y         +R      +      +     Y +        +  +     + F
Sbjct: 90  TPFLEYYRK----MVEERRKNPESKGNWGNWRS-CLRYLEIYCDEKTTFRDVTPEFVMGF 144

Query: 96  ESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI 155
           + + + + + +    ++++  +  R     +  + +S + +   +R     A  +  + I
Sbjct: 145 KEFLEHVEKDT----HKRVGPRRERDTF--QGLSQNSKVSYFNKLRACINQAYDERVIPI 198

Query: 156 NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ 215
           NP   +E  K         T ++++Q  +        + AF F   +G+R SD  +    
Sbjct: 199 NPLRGIEGFKAAEVKRDYLTLDEVRQLAATPCRYPILKRAFLFSCLTGIRKSDIQKLTWG 258

Query: 216 HLQN----NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI 271
            +Q          K +KTG    +++     K L       +  F         + +   
Sbjct: 259 EVQKFGEYTRIVFKQKKTGGQEYLDITPQAEKYLGERGNPDDLVFTGFTYGAWTSLELQR 318

Query: 272 WFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           W    +  AG+NK  + H  R   A +  D GA  + +    G K +   + Y K  D+ 
Sbjct: 319 W----SLAAGMNKNLTFHCGRHTFAILMLDLGADIYTVSKLLGHKELATTQIYAKVLDKN 374

Query: 330 R 330
           +
Sbjct: 375 K 375


>gi|296110353|ref|YP_003620734.1| site-specific recombinase, phage integrase family [Leuconostoc
           kimchii IMSNU 11154]
 gi|295831884|gb|ADG39765.1| site-specific recombinase, phage integrase family [Leuconostoc
           kimchii IMSNU 11154]
          Length = 304

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 41/274 (14%), Positives = 92/274 (33%), Gaps = 29/274 (10%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQII----RKSGDFDYRKITTKHIRSGVESRKHT---P 130
           Y  S      +  +  ++ S  D+ I    +  G  ++R +    +R  +          
Sbjct: 12  YLVSER--QYSPLTLKAYLSDIDEFINFLAQNGGFTNFRAVQPLDVRVYLNDLYERHLAR 69

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ-----QFKSF 185
           +S  + ++S+R+ +++ V  ++V  NP  ++   K +      + + +M       +   
Sbjct: 70  TSISRKISSLRMFYQFMVANQFVIDNPFENIALRKHQNHLPEFFYETEMATLFDTAYNQE 129

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVE-------- 236
                +     EFL  +G R ++     +  L  +    +   K      V         
Sbjct: 130 DKLWQRNAALLEFLYATGARVTEIATLTIAQLDFSQRLVLIHGKGNKDRYVPFGHFAAQA 189

Query: 237 ----LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVR 290
               L +    L A  P   +  F+N+  + + A   +        ++ +      H +R
Sbjct: 190 LMQYLSETRADLTAKQPAPHQVVFVNHRGEPITAAGITYILNQLMQRSALTGKIHPHMLR 249

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              AT   + GA    +    G   +   + YT 
Sbjct: 250 HTFATHLLNNGADMRTVQELLGHVNLSTTQMYTH 283


>gi|167463333|ref|ZP_02328422.1| tyrosine recombinase xerC [Paenibacillus larvae subsp. larvae
           BRL-230010]
 gi|322384830|ref|ZP_08058491.1| site-specific tyrosine recombinase XerD-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321150299|gb|EFX43801.1| site-specific tyrosine recombinase XerD-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 317

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 49/273 (17%), Positives = 99/273 (36%), Gaps = 25/273 (9%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS----------GVESRKHTPSSAIQFL 137
           A N+R ++E    Q         ++++T K + +              +   P+S   F+
Sbjct: 34  AANTRRNYERALQQFREFISYKPFQQVTWKEVEAYKLSLIQGRFAKSKKPLAPASVAAFI 93

Query: 138 TSMRVLFKWAVRQ--EYVAINPCLSVERPKRK-TEGIRPWTKEDMQQFKSFWSEGS-QPR 193
           T +R  +KW           NP +SV  P  +        TK ++ +      + S +  
Sbjct: 94  TPLRSFYKWGSESNIGIFKHNPTVSVRMPPIQVNSKKHFLTKYEVGKLLQCLKQQSLRNY 153

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNN------IFSIKTQKTGTIITVELPDGFMKLL-- 245
           L    L+  GLR S+           +        +I   K G    +++P    KL   
Sbjct: 154 LIGLSLVLLGLRVSELVSMKWGDFHPDPLETSVWLTIPKAKGGKSRDIKIPKALWKLYTE 213

Query: 246 -AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGA 302
            A T         N     ++  Q     K+   ++G+    + H +R  +AT++   GA
Sbjct: 214 HAETLSESANPHANLQLFPISVRQIERIIKSAGIQSGIVKKLTPHWLRHTNATLALLQGA 273

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335
           +  ++  T G   ++  + Y    ++++    +
Sbjct: 274 SLQQVQETLGHSHINTTQRYLHTVEQMKKAAPD 306


>gi|160896902|ref|YP_001562484.1| integrase family protein [Delftia acidovorans SPH-1]
 gi|160362486|gb|ABX34099.1| integrase family protein [Delftia acidovorans SPH-1]
          Length = 365

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 51/295 (17%), Positives = 94/295 (31%), Gaps = 41/295 (13%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIR---SGVE 124
           L   +  Y +       LA  +   +     ++   + D   +   +   HIR   + + 
Sbjct: 28  LPAAVHAYLEHVRVQKRLADRTCALYALDMARLCTMARDAGQELLALQPAHIRRFVAQMH 87

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
           SR  +P      L+  R  F+WA +Q  V  NP   V  PK      +    +D  Q  +
Sbjct: 88  SRGRSPRGIALILSGWRSFFRWAAQQSLVPFNPVEGVRGPKAPKPLPKALGVDDAVQLAA 147

Query: 185 FWS------EGSQPRLAFEFLLYSGLRCSDSCRAGV------QHLQNNIFSIK------T 226
           F +        ++     E L   GLR  +     V      Q        ++       
Sbjct: 148 FSNAEADPWIEARDAAITELLYSCGLRVGELVGLDVAPGQDTQRQGRGWIDLQAADAHVQ 207

Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKET---------------FFINNDKQKMNATQFSI 271
            K G   TV +    ++ L      +ET                FI    +++ A     
Sbjct: 208 GKGGKRRTVPVGAAALQALQRWLALRETGLAGAAALAAHHESALFIGRRGERLGAQSVWT 267

Query: 272 WFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             + +  +AG+      H +R   A+    +      +    G  ++   + YT+
Sbjct: 268 RLRQRGQQAGLSAGVHPHVLRHSFASHMLQSSGDLRAVQELLGHASISTTQIYTR 322


>gi|196247646|ref|ZP_03146348.1| tyrosine recombinase XerC [Geobacillus sp. G11MC16]
 gi|196212430|gb|EDY07187.1| tyrosine recombinase XerC [Geobacillus sp. G11MC16]
          Length = 300

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 44/284 (15%), Positives = 90/284 (31%), Gaps = 28/284 (9%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE------SR 126
            L  EY +     + +  + + +    +Q ++   +    ++                 +
Sbjct: 9   QLFLEYLQIE--KNYSQYTIVCYRRDIEQFLQFMNEEGIDELNEVAYSDVRLYLTKLYGQ 66

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185
           +    S  + ++S+R  +K+ +R+ + A NP      PK++ +      +E+++      
Sbjct: 67  QLASRSVARKISSLRSFYKFLLREGWAAENPFALAALPKKEQKIPNFLYREELEALFRVN 126

Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGF 241
               + G +     E L  +G R S+ C   +  L       +   K      V      
Sbjct: 127 DGNTAVGQRNAALLELLYATGARVSECCHIRLSDLDFAASTVLIHGKGNKQRYVPFGRPA 186

Query: 242 MKLLAM------------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAH 287
            + L               P      F+N     +               A +  N S H
Sbjct: 187 REALERYIGGGRRELVGKLPADHRYLFVNARGNPLTPRGVRYILDRIVETAALTQNISPH 246

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330
            +R   AT   + GA    +    G   +   + YT    DR+R
Sbjct: 247 VLRHTFATHLLNEGADLRSVQELLGHAHLSSTQVYTHVTKDRLR 290


>gi|298370045|ref|ZP_06981361.1| tyrosine recombinase XerC [Neisseria sp. oral taxon 014 str. F0314]
 gi|298281505|gb|EFI22994.1| tyrosine recombinase XerC [Neisseria sp. oral taxon 014 str. F0314]
          Length = 300

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 46/271 (16%), Positives = 93/271 (34%), Gaps = 19/271 (7%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES---RK 127
               ++  R+           R    S  ++++      +   +      + ++    R 
Sbjct: 10  FDDYLTALRQEGKSAHTVEAYRRDL-SQLERLLMLRPSENGADVRRGDFLAALKKLSQRN 68

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS--- 184
            +  S  + L+  R    W V++  +A +P  +++ PK      +   +E +    +   
Sbjct: 69  LSERSMARKLSVWRQYCGWLVQRGLMAADPTANLKAPKPPQRLPKAVQQEPLNHLLNQGC 128

Query: 185 -FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVEL---- 237
              +   + R  FE L  SGLR S+ C   +  +        + T K G    V L    
Sbjct: 129 GEDALALRDRAVFELLYGSGLRLSEVCGLNLHDVLPDEGWVGV-TGKGGKQRRVPLVRKS 187

Query: 238 PDGFMKLL--AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293
            D  +  L   +   G+   F N + +++   Q     +  A + G   + S H +R   
Sbjct: 188 IDALLDYLPHRVAAEGEAALFTNKNGRRLGQRQIQKRLQQWAAEQGSAQHLSPHMLRHSY 247

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324
           A+    A      +    G   +   + YTK
Sbjct: 248 ASHLLQASRDIRAVQELLGHSNLSTTQIYTK 278


>gi|255690132|ref|ZP_05413807.1| integrase/recombinase, phage integrase family [Bacteroides
           finegoldii DSM 17565]
 gi|260624416|gb|EEX47287.1| integrase/recombinase, phage integrase family [Bacteroides
           finegoldii DSM 17565]
          Length = 327

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 45/279 (16%), Positives = 99/279 (35%), Gaps = 15/279 (5%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           LI  +  +      +  S   + S  +  IRK  + + R ITT  +R+ +   + T  + 
Sbjct: 52  LIDSFLSAKRVEGCSDKSIHYYRSTLNNAIRKI-EKNIRHITTDDLRNYLNDYQQTSGAT 110

Query: 134 ----IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
                     +   F W   ++Y+  +P   + + K        ++ E ++Q +    EG
Sbjct: 111 KVTVDNIRRILSSFFSWLEDEDYIVKSPVRRIHKVKVGKTVKETYSDEALEQMRDHC-EG 169

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDG----FMKL 244
            +     + L  +G+R  +  +     +   N   I T K      V           + 
Sbjct: 170 IRDLALIDLLASTGMRVGELVKLNRNDIDFENRECIVTGKGDKQRRVYFDARTKIHLQRY 229

Query: 245 LAMTPIGKETFFIN--NDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG 301
           LA         F++      ++  +   I  +    +  + K   H  R+  AT++ D G
Sbjct: 230 LAERIDDNPALFVSLLAPYDRLQISGVEIRLRRLGRELNIPKVHPHKFRRTLATMAIDKG 289

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
               ++    G +++D    Y    ++  + + + + I 
Sbjct: 290 MPIEQVQHLLGHQSLDTTLQYA-MVNQTNVKMSHRKFIG 327


>gi|254882931|ref|ZP_05255641.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|319639734|ref|ZP_07994466.1| integrase [Bacteroides sp. 3_1_40A]
 gi|254835724|gb|EET16033.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|317388650|gb|EFV69497.1| integrase [Bacteroides sp. 3_1_40A]
          Length = 200

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 38/203 (18%), Positives = 76/203 (37%), Gaps = 20/203 (9%)

Query: 154 AINPCLSVERPKRKTEGIR--PWTKEDMQQFKSFWSEGSQP--RLAFEFLLYSGLRCSDS 209
           + +PC  +   K  ++ +R    + +++Q+  +   +   P  R AF F LY GLR  + 
Sbjct: 4   SKDPCKDIT-CKVDSQMLRKDVLSPKEVQKLMACHYDNENPTVRQAFIFCLYCGLRFCNV 62

Query: 210 CRAGVQHLQ--NNIFSIKTQKTG-----TIITVELPDGFMKLLAMTPIGKETFFINNDKQ 262
                +++   N +   +  K       + + + L DG + ++   P  K     +    
Sbjct: 63  KDLTFKNVDYANRLLKFEQSKAKGHSASSGVVIPLNDGLLSIIGEVPTDKNCLIFDLS-- 120

Query: 263 KMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
                      K    +AG++K  S H  R   A    + GA    + +  G   +   E
Sbjct: 121 --TYESCCKSVKRWVKRAGIDKHISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTE 178

Query: 321 TYTKGADRIRLGIKNSRRISSVV 343
            YT+  D  +L  +    +  + 
Sbjct: 179 KYTRAVD--KLKEEAINSLPELK 199


>gi|228475035|ref|ZP_04059763.1| tyrosine recombinase XerC [Staphylococcus hominis SK119]
 gi|228271020|gb|EEK12408.1| tyrosine recombinase XerC [Staphylococcus hominis SK119]
          Length = 297

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 41/266 (15%), Positives = 97/266 (36%), Gaps = 22/266 (8%)

Query: 85  GSLAVNSRISFE---SYFDQIIRKSGDFDYRKITTKHIRSGVE---SRKHTPSSAIQFLT 138
            + + ++  ++    + F+Q + +    + R    K  R+ +    S     ++  + ++
Sbjct: 16  RNFSDHTLKAYHDDLAQFNQFLEQ-ELLNLRTFEYKDARNYLSYLYSNNLKRTTVSRKIS 74

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194
           ++R  +++ + Q+    NP + +  PK++    + + +E+M+   +       +G + R+
Sbjct: 75  TLRTFYEFWMTQDTSVNNPFIQLVHPKKEQYLPQFFYEEEMEALFNTVSNDAKKGLRDRV 134

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE--------LPDGFMKLL 245
             E L  +G+R S+     V  L  N+  +K   K      V         +     K  
Sbjct: 135 VIELLYATGIRVSELVNIKVMDLDMNLPGVKVLGKGNKERFVPFGEFCRQSIEQYLEKFK 194

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATK-AGV-NKSAHGVRKFSATISADAGAT 303
            +         +N     +              + AGV     H +R   AT   + GA 
Sbjct: 195 PLKSKSHPYLIVNMKGDPITERGVRYLLNDVVERTAGVTEIHPHKLRHTFATHLLNQGAD 254

Query: 304 AHELMATYGWKTVDQAETYTKGADRI 329
              + +  G   +     YT  +++ 
Sbjct: 255 LRTVQSLLGHVNLSTTGKYTHVSNQQ 280


>gi|254517350|ref|ZP_05129407.1| phage integrase family protein [gamma proteobacterium NOR5-3]
 gi|219674188|gb|EED30557.1| phage integrase family protein [gamma proteobacterium NOR5-3]
          Length = 391

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 42/293 (14%), Positives = 92/293 (31%), Gaps = 24/293 (8%)

Query: 49  SALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD 108
           + +      +      +  PT   +    Y    H        +   + +  ++  + G 
Sbjct: 83  AEIALGADPQAEAQQRKAVPTWHAFFTDSYL--PHAKQTKRTWKNDADMHRLRLGPRFGA 140

Query: 109 FDYRKITTKHIRSGVESRKHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165
                IT + ++      + +   P++A   L  +R     AV    +  NP   V++  
Sbjct: 141 TPINGITRQEVQQFHNELRESGMAPATADHHLKLLRHALNLAVDWGLLQANPAARVKQFN 200

Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGS--QPRLAFEFLLYSGLRCSDSCRAGVQHLQNN--- 220
              E  R  T  ++++               A  +LL +G R  ++  A    +      
Sbjct: 201 VFNEVERYLTDPELRRLLEVLKAHENRPVACAVLWLLATGARVGEALAAEWPDIDRGNRV 260

Query: 221 -IFSIKTQKTGTIITVEL-------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW 272
            +      K+  + ++ L        D    L    P G+   FI          +    
Sbjct: 261 WVVHATNSKSKKLRSIPLNDVALGVLDELQTLPRYQPGGR--LFIGKRGPLGTINKVWYG 318

Query: 273 FKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            +     AG+   + H +R   A++  ++G + +E+    G         Y+ 
Sbjct: 319 IRDA---AGLESFTLHCLRHSHASLLVNSGHSLYEVQRVLGHSDPKVTMRYSH 368


>gi|150390005|ref|YP_001320054.1| phage integrase family protein [Alkaliphilus metalliredigens QYMF]
 gi|149949867|gb|ABR48395.1| phage integrase family protein [Alkaliphilus metalliredigens QYMF]
          Length = 354

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 34/262 (12%), Positives = 94/262 (35%), Gaps = 18/262 (6%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES----RKHTP 130
           + +  K       +  ++ S+  +  + +    +     +T + +   +      ++++ 
Sbjct: 81  LQQLEKQFTLKGYSPKTKKSYIGHVKRFLGFINNKP-EVLTKQDVEKYMYHLLNVQENSH 139

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           + A Q L++++  ++ +++++ V  +    + RPK++       ++ ++       +   
Sbjct: 140 AFANQALSAIKFYYQHSLKKDKVLYD----LPRPKKEKTLPNILSQREVLSILDSVN-NI 194

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLLAMT 248
           + +        +GLR  +  R  V  + ++     ++  K        L +  +  L   
Sbjct: 195 KHKSILLLTYSAGLRVGEVVRLKVGDIDSDRMLIHVRQGKGRKDRYTILSEVALSTLRKY 254

Query: 249 P-IGKETFFINNDKQK---MNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302
             I K   ++    ++   +        F     +A V K  S H +R   AT   + G 
Sbjct: 255 AMIEKPKDWLFPGGKENCFLTERSVQKTFSVACKRAKVKKHASVHSLRHSFATHLLEGGT 314

Query: 303 TAHELMATYGWKTVDQAETYTK 324
               +    G  +    E YT 
Sbjct: 315 DLRYIQELLGHSSSKTTEIYTH 336


>gi|298484756|ref|ZP_07002857.1| Site-specific recombinase, phage integrase family [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
 gi|298160725|gb|EFI01745.1| Site-specific recombinase, phage integrase family [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
          Length = 319

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 52/276 (18%), Positives = 106/276 (38%), Gaps = 31/276 (11%)

Query: 84  WGSLA-VNSRISFESYFDQIIRKSGDF---DYRKITTKHI---RSGVESRKHTPSSAIQF 136
           + +L    +R ++++         G     D+R++T  H+   R+ +E R    ++  + 
Sbjct: 33  FANLDNPRTRRAYQNDLTDFCSFIGLASADDFRQVTRSHVLAWRADLEQRGLAGATIRRK 92

Query: 137 LTSMRVLFKWAVRQE-YVAINPCLSVERPKRKT-EGIRPWTKED-----MQQFKSFWSEG 189
           L ++  LF   +        NP   V+RP+ +T EG  P   +      ++   +   +G
Sbjct: 93  LAALASLFDHLLDNNAVAGGNPVHGVKRPRIETNEGKTPALGDHQAKQLLEAPDTETLKG 152

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTII-TVELPDGFMKLLA 246
            + R     LLY GLR  ++ +     L  +  I  ++    G+ I  + L     + + 
Sbjct: 153 LRDRAILAVLLYHGLRREEAAQLTTGDLQERRGIKHLRVHGKGSKIRFLPLHPMAAERIH 212

Query: 247 M---TPIGKET----FFINNDKQ----KMNATQFSIWFKAKATKAGV---NKSAHGVRKF 292
                 + ++T     F +         + A       +A A KAG+   +   HG+R  
Sbjct: 213 AYLEQDVERDTAPGPLFRSLRGTTTGAGITANGIYTVVEAYAKKAGIVVEHLGVHGLRAT 272

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           +AT + +  A   ++    G   +     Y +   R
Sbjct: 273 AATNALEHDADIAKVQMWLGHANISTTRLYDRRGQR 308


>gi|327398855|ref|YP_004339724.1| integrase family protein [Hippea maritima DSM 10411]
 gi|327181484|gb|AEA33665.1| integrase family protein [Hippea maritima DSM 10411]
          Length = 370

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 59/324 (18%), Positives = 106/324 (32%), Gaps = 18/324 (5%)

Query: 29  HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI-SEYRKSAHWGSL 87
           HG+R+R      +      + A   S          R+     +  +  +Y   A     
Sbjct: 41  HGKRVRQTVSGTNLQGAKEIEAKIKSELVSGEYYDRRQAKIAFEQFVKEKYLPYAKEKKS 100

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWA 147
                     +   II K    +   +  + ++  +   +  P +    +  MR +F  A
Sbjct: 101 YNREESLLRLWIFPIIDKKTLNNISPLDIEKVKKEMIKNEKAPRTIEYAIAVMRQVFNKA 160

Query: 148 VRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS-QPRLAFEFLLYSGLR 205
           +    Y   NP   V++PK+    +R  TKE+ ++  S   + S Q        LY+G+R
Sbjct: 161 IEWGFYFGANPAAKVKKPKKDNRRMRFLTKEEAEKLLSELKKHSIQVYEMAYLSLYTGMR 220

Query: 206 CSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMT-----PIGKETFFIN 258
             +      Q +   N I +IK  K        + D    LL        P     F  +
Sbjct: 221 FGEIANLTWQDIDFQNGIITIKDPKNSESRVAYMTDSLRDLLYAKYKREKPKNSSGFVFH 280

Query: 259 NDKQKMN--ATQFSIWFKAKATKAGV-----NKSAHGVRKFSATISADAGATAHELMATY 311
            + +        F    +      G+         H +R   A+  A  G   + +    
Sbjct: 281 RNGKPYKQIPGTFKTVVRKLGLNDGITDPRDKVVFHTLRHTFASWLAIQGTPIYTIKELM 340

Query: 312 GWKTVDQAETYTKGA-DRIRLGIK 334
           G KT+   E Y+    D  R  ++
Sbjct: 341 GHKTLAMTERYSHLIPDAKREAVE 364


>gi|310815561|ref|YP_003963525.1| phage integrase family protein [Ketogulonicigenium vulgare Y25]
 gi|308754296|gb|ADO42225.1| phage integrase family protein [Ketogulonicigenium vulgare Y25]
          Length = 313

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 43/280 (15%), Positives = 88/280 (31%), Gaps = 39/280 (13%)

Query: 88  AVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGV---ESRKHTPSSAIQF------ 136
           A N+ +++                D+  +    I   +     +  +PS+  +       
Sbjct: 19  ARNTLLAYGRDLQDFAAWLARRKLDFLTLDQADIEDYLTFCADQGLSPSTRARRPTRARR 78

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS------ 190
           L+++R LF++A  + +   NP + ++   +         ++++ +        S      
Sbjct: 79  LSAVRQLFRFAFDEGWRTDNPSIRLKGATKARTLPETLNEDEVDRLLDAARAASAARPRE 138

Query: 191 --QPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKLLAM 247
             +     E L  +G+R S+     V   + +    +   K G    V L       +  
Sbjct: 139 ALRNTCLLELLYATGMRVSELVTLPVAAARGDPRMLLVRGKGGKERLVPLSPPARTAMVE 198

Query: 248 TPIGKET--------------FFINNDK--QKMNATQFSIWFKAKATKAGV---NKSAHG 288
               ++T              F   +      +    F +  K  A  AG+     S H 
Sbjct: 199 WLAQRDTEQEALRKAGGQPSRFLFPSHGADGHLTRQHFLVILKDLAVLAGISPARVSPHK 258

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           +R   AT     GA    +    G   +   E YT   D+
Sbjct: 259 LRHAFATHLLANGADLRAIQTMLGHADIATTEIYTHVLDQ 298


>gi|254166742|ref|ZP_04873596.1| site-specific recombinase, phage integrase family protein
           [Aciduliprofundum boonei T469]
 gi|197624352|gb|EDY36913.1| site-specific recombinase, phage integrase family protein
           [Aciduliprofundum boonei T469]
          Length = 279

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 47/265 (17%), Positives = 95/265 (35%), Gaps = 19/265 (7%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----SRKHTP 130
           + ++++       + N+   +  +   ++R         IT   +          RK++ 
Sbjct: 8   LEKFKEYLRGEKRSENTIKEYAHFISDMLRYF-HKRAEDITPGDLNKYKMYLSTKRKYSK 66

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           +S      ++R  FK+        ++   ++  PKR  +  +  +++++++     SE  
Sbjct: 67  NSLYLATKAIRSYFKY------KNLDTAKNLSSPKRPRQMPKYLSEDEVKRLIEASSENP 120

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPD----GFMKL 244
           +       L YSGLR S+ C   ++ +     I  + + K      V +           
Sbjct: 121 RDYAIISLLAYSGLRVSELCNLKIEDVDFNERIVYVHSGKGDKDRIVVVSPRVIEALQNY 180

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302
           L       E  F +    K++  Q     K  A KAG+ K  + H +R   AT     G 
Sbjct: 181 LYTREDDMEYLFASQKSNKISRVQVFRIVKKYAEKAGIKKEVTPHVLRHTLATTLLRRGV 240

Query: 303 TAHELMATYGWKTVDQAETYTKGAD 327
               +    G  +V   + YT   D
Sbjct: 241 DIRFIQQFLGHSSVATTQIYTHVDD 265


>gi|71042133|pdb|1Z1G|A Chain A, Crystal Structure Of A Lambda Integrase Tetramer Bound To
           A Holliday Junction
 gi|71042134|pdb|1Z1G|C Chain C, Crystal Structure Of A Lambda Integrase Tetramer Bound To
           A Holliday Junction
 gi|71042141|pdb|1Z1G|B Chain B, Crystal Structure Of A Lambda Integrase Tetramer Bound To
           A Holliday Junction
 gi|71042144|pdb|1Z1G|D Chain D, Crystal Structure Of A Lambda Integrase Tetramer Bound To
           A Holliday Junction
          Length = 356

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 59/343 (17%), Positives = 112/343 (32%), Gaps = 25/343 (7%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMS---ALTGSTPKREYINS 63
           LPP +     R+     Y     G+   L          A  +     +G   K      
Sbjct: 12  LPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLTARI 68

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
                 TL   +  Y K      +   + I++ S    I R   D     ITTK I + +
Sbjct: 69  NSDNSVTLHSWLDRYEKILASRGIKQKTLINYXSKIKAIRRGLPDAPLEDITTKEIAAXL 128

Query: 124 ESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
                    +SA    +++   F+ A+ + ++  N   +    K +    R    E ++ 
Sbjct: 129 NGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNHVAATRAAKSEVRRSRLTADEYLKI 188

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE----- 236
           +++  S     RLA E  + +G R  D C      + +    ++  KTG  I +      
Sbjct: 189 YQAAESSPCWLRLAXELAVVTGQRVGDLCEXKWSDIVDGYLYVEQSKTGVKIAIPTALHI 248

Query: 237 ----LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NKSAH 287
               +            +G ET   +  ++ +++   S +F      +G+       + H
Sbjct: 249 DALGISXKETLDKCKEILGGETIIASTRREPLSSGTVSRYFXRARKASGLSFEGDPPTFH 308

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
            +R   +    +   +        G K+   A  +    DR R
Sbjct: 309 ELR-SLSARLYEKQISDKFAQHLLGHKSDTXASQF--RDDRGR 348


>gi|320326565|gb|EFW82616.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320331369|gb|EFW87310.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330881323|gb|EGH15472.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 299

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 37/259 (14%), Positives = 93/259 (35%), Gaps = 19/259 (7%)

Query: 85  GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIR---SGVESRKHTPSSAIQFLT 138
             ++ ++  ++     ++    +K+    +  +  +H+R   +    +  +  S  + L+
Sbjct: 16  RQVSPHTLEAYRRDLSKVLAYCQKAQLSSWNDLDIQHLRSFTARQHQQGQSSRSLARMLS 75

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRL 194
           ++R  +K+  R+     +P   +  PK +    +    +   Q      E      + + 
Sbjct: 76  AVRGFYKYLNREGICQHDPANGLSPPKGERRLPKTLDTDRTAQLLDGGVEDDFLAHRDQA 135

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV--------ELPDGFMKLLA 246
             E L  SGLR S+     +  L      ++    G+   V        +  + ++ L A
Sbjct: 136 ILELLYSSGLRLSELTGLNLDQLDLRDGLVQVLGKGSKTRVLPVGSKARQALEIWLPLRA 195

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAK-ATKAGVNKSAHGVRKFSATISADAGATAH 305
           +T    +  F++   +++      +  KA    + G N   H +R   A+   ++     
Sbjct: 196 LTNPQDDAVFVSQQGKRLGPRTIQVRLKAAGERELGQNLHPHMLRHSFASHLLESSQDLR 255

Query: 306 ELMATYGWKTVDQAETYTK 324
            +    G   +   + YT 
Sbjct: 256 AVQELLGHADIKTTQIYTH 274


>gi|291527676|emb|CBK93262.1| Site-specific recombinase XerD [Eubacterium rectale M104/1]
          Length = 306

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 41/283 (14%), Positives = 95/283 (33%), Gaps = 28/283 (9%)

Query: 70  TLKWLISEYRKSAHWGS-LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-- 126
           TL+ +I+ Y +  +    L   +  ++     Q   +    +  +IT K +   +     
Sbjct: 3   TLETVINNYLEYCNSQKCLDEKTLKAYRIDLRQFSEQISIINITEITPKILEQYIVRLHE 62

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV-ERPKRKTEGIRPWTKEDMQQF--- 182
           ++ P +  + + S++ LF +   ++ +  NP   +    +      +      ++ F   
Sbjct: 63  QYKPKTVKRKIASVKALFHYLEYKDILDHNPFNKILIHFRDPVILPKTIPLHTVETFLST 122

Query: 183 ----KSFWSEGSQPRLAF------EFLLYSGLRCSDSCRAGVQHLQ--NNIFSI------ 224
               +       Q R A       E L  +G+R S+ C   +  +   +    I      
Sbjct: 123 IYKQRKNAKTSYQKRNALRDAAVAELLFATGMRISELCSLKINDVNLYDGTILIYGKGDK 182

Query: 225 -KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
            +  + G    + +   +             FFIN   + ++            + A ++
Sbjct: 183 ERRIQIGNEAVINILTEYNDAFDTERQACNNFFINQSGKALSDQSVRRMINKYTSLASID 242

Query: 284 K--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +  + H  R   AT   +A      +    G  +++  E YT 
Sbjct: 243 QHITPHMFRHTFATSLLEADVDIRYIQEMLGHSSINITEIYTH 285


>gi|296129776|ref|YP_003637026.1| tyrosine recombinase XerD [Cellulomonas flavigena DSM 20109]
 gi|296021591|gb|ADG74827.1| tyrosine recombinase XerD [Cellulomonas flavigena DSM 20109]
          Length = 310

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 41/272 (15%), Positives = 89/272 (32%), Gaps = 33/272 (12%)

Query: 85  GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRK--------HTPSSA 133
             LA ++  ++     + +      G  +  +IT +     V   +         +P+SA
Sbjct: 20  RGLAAHTLAAYRRDLTRYVAHLHARGRTEPAEITERDAEDYVLVLRTGSDGRAVLSPASA 79

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-----SE 188
            + + ++R   ++         +    +  P +     +    +D+ +            
Sbjct: 80  ARSVVALRGWHRFLALDGLAPTDAAAELRPPAQPRRLPKAIGVDDVARLLDAAGLGDGPV 139

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKT-QKTGTIITVELPDGFMKL- 244
             + R   E +  +G R S++    V  L    +  +++   K G    V +     +  
Sbjct: 140 PLRDRALLELVYSTGARISEAVGLDVDDLDLTPDRGAVRLLGKGGKERVVPVGSYAAQAV 199

Query: 245 ----------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRK 291
                     LA    G    F+N    +++        +  A +AG+   + S H +R 
Sbjct: 200 DAYLVRGRPALAAAGRGTPAIFLNTRGARLSRQSAWAVLRTAAERAGLAADHLSPHTLRH 259

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYT 323
             AT     GA    +    G  +V   + YT
Sbjct: 260 SFATHLLAGGADVRVVQELLGHASVATTQIYT 291


>gi|66043455|ref|YP_233296.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           syringae B728a]
 gi|75503929|sp|Q500B4|XERC_PSEU2 RecName: Full=Tyrosine recombinase xerC
 gi|63254162|gb|AAY35258.1| Phage integrase:Phage integrase, N-terminal SAM-like [Pseudomonas
           syringae pv. syringae B728a]
          Length = 299

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 37/259 (14%), Positives = 93/259 (35%), Gaps = 19/259 (7%)

Query: 85  GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIR---SGVESRKHTPSSAIQFLT 138
             ++ ++  ++     ++    +K+    +  +  +H+R   +    +  +  S  + L+
Sbjct: 16  RQVSPHTLEAYRRDLGKVLAYCQKAQVSSWSDLDIQHLRSFTARQHQQGQSSRSLARMLS 75

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRL 194
           ++R  +K+  R+     +P   +  PK +    +    +   Q      E      + + 
Sbjct: 76  AVRGFYKYLNREGICQHDPANGLSPPKGERRLPKTLDTDRAAQLLDGGVEDDFLAHRDQA 135

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV--------ELPDGFMKLLA 246
             E L  SGLR S+     +  L      ++    G+   V        +  + ++ L A
Sbjct: 136 ILELLYSSGLRLSELTGLNLDQLDLRDGLVQVLGKGSKTRVLPVGSKARQALEVWLPLRA 195

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAK-ATKAGVNKSAHGVRKFSATISADAGATAH 305
           +T    +  F++   +++      +  KA    + G N   H +R   A+   ++     
Sbjct: 196 LTNPQDDAVFVSQQGKRLGPRAIQVRLKAAGERELGQNLHPHMLRHSFASHLLESSQDLR 255

Query: 306 ELMATYGWKTVDQAETYTK 324
            +    G   +   + YT 
Sbjct: 256 AVQELLGHADIKTTQIYTH 274


>gi|319957731|ref|YP_004168994.1| tyrosine recombinase xerd subunit [Nitratifractor salsuginis DSM
           16511]
 gi|319420135|gb|ADV47245.1| tyrosine recombinase XerD subunit [Nitratifractor salsuginis DSM
           16511]
          Length = 276

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 38/248 (15%), Positives = 81/248 (32%), Gaps = 18/248 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLF 144
             L+  S  S+ +   Q+  + GD    K+ T+ I + +    +   +  + L S+    
Sbjct: 20  KGLSPKSIDSYLTDLRQLAEEQGD--LLKLETESILAFLSRFDNK-RTLNRKLASINAFV 76

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ----FKSFWSEGSQPRLAFEFLL 200
            +  R++       + +   +      +  + E+++            G +      FL 
Sbjct: 77  NFCHREKLGTS--RVKIPMARVPKTLPKYLSHEEIEAGLRYIDRSTPIGRRDYALILFLY 134

Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG----FMKLLAMTPIGKETFF 256
            SG R S++       L +    I+  K      V L         + L  + I     +
Sbjct: 135 ASGCRISEALAVQRGDLVDGWLKIRYAKGARERMVPLAPAALKALEEHLKESDIASPYLW 194

Query: 257 INNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTV 316
           +N   + ++        +       +  S H +R   AT     GA    +    G  ++
Sbjct: 195 LNYRGEPLSRVSAYKIVRKY-----LGVSPHVLRHSFATALILGGADLRVVQELLGHSSL 249

Query: 317 DQAETYTK 324
              + YT 
Sbjct: 250 ITTQIYTH 257


>gi|225351382|ref|ZP_03742405.1| hypothetical protein BIFPSEUDO_02976 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157726|gb|EEG71009.1| hypothetical protein BIFPSEUDO_02976 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 308

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 42/274 (15%), Positives = 80/274 (29%), Gaps = 34/274 (12%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK-----HTPSSAIQFLTS 139
             L+ N+R ++    ++ +        R +    I             H  SS  +   +
Sbjct: 18  RGLSENTRKAYRGDVEECLLALERLRCRDLNEVTIEDLRMWMAESSKNHAKSSMARKTVA 77

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----------- 188
           +R  F W         +P  ++  PK         ++   +Q      E           
Sbjct: 78  VRGFFAWTHEHGVTTTDPACALMTPKIPDTLPDVLSESQAEQLMERVDEDGETSQPKERT 137

Query: 189 ------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGF 241
                   +     E L  +G+R ++     V  +  +N     T K      +      
Sbjct: 138 MKQQAIELRDAAMLELLYATGMRVAELVGLDVPDVVFSNRTVKVTGKGNKQRVMPFGAPA 197

Query: 242 MKLLAMTPIGKE----------TFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVR 290
            K +                    F+    ++++           A  AGV + S H +R
Sbjct: 198 QKAIRRWLDDGRPLLVGEQSAAALFLGRQGKRIDQRMVRRVVHECARDAGVPDISPHALR 257

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             +AT   D GA   E+    G  ++   + YT 
Sbjct: 258 HSAATHMLDGGADLREVQELLGHSSLKTTQRYTH 291


>gi|169630285|ref|YP_001703934.1| site-specific tyrosine recombinase XerC [Mycobacterium abscessus
           ATCC 19977]
 gi|169242252|emb|CAM63280.1| Tyrosine recombinase XerC [Mycobacterium abscessus]
          Length = 304

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 41/283 (14%), Positives = 99/283 (34%), Gaps = 29/283 (10%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFES----YFDQIIRKSGDFDYRKITTKHIRSGVES 125
           L  ++ E+ +        +V+++ ++       FD +   + +     ++   +RS + +
Sbjct: 5   LAAILDEFAEHLALERGRSVHTQRAYRGDLTLLFDHLSASNPEATLADLSLPVLRSWLGA 64

Query: 126 RKHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ- 181
           +       S+  +  +++++   WA R+  +  +P + +++PK +        ++     
Sbjct: 65  QARQGAARSTVARRTSAVKIFTAWATRRGLLPTDPAIRLQQPKSRRTLPAVLRQDQAAAA 124

Query: 182 -------FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTII 233
                   +       + RL  E L  +G+R S+ C   +  +      ++   K     
Sbjct: 125 MEAAHSGAEQDDPMALRDRLIVEMLYATGIRVSELCGLDIDDIDRPRKVLRVLGKGDKER 184

Query: 234 TVELPDGFMKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAK--ATKAG 281
           TV   D     L+            P       +    ++++  Q          A    
Sbjct: 185 TVPFGDPAADALSAWLDRGRPHLAVPASGAALLLGARGRRVDPRQVRTVVHQTMSAVPGA 244

Query: 282 VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            +   HG+R  +AT   + GA    +    G  T+   + YT 
Sbjct: 245 PDIGPHGLRHSAATHLLEGGADLRVVQELLGHSTLATTQLYTH 287


>gi|320352610|ref|YP_004193949.1| integrase family protein [Desulfobulbus propionicus DSM 2032]
 gi|320121112|gb|ADW16658.1| integrase family protein [Desulfobulbus propionicus DSM 2032]
          Length = 387

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 46/268 (17%), Positives = 92/268 (34%), Gaps = 11/268 (4%)

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
           +++  T   L   Y +          +    E+YF + +   G      IT   I +   
Sbjct: 97  QRQEMTFADLFEIYLE--RHAKPRKKTWREDETYFKRHLASFGKKRLSTITKGDIAAIHS 154

Query: 125 S-RKHTPSSAIQFLTSMRVLFKWAVRQEYVAI-NPCLSVERPKRKTEGIRPWTKEDMQQF 182
           S  K  P+ A + L  +  +    +        NPC  +++   +    R  + +++ +F
Sbjct: 155 SIGKDRPTHANRVLALVSSIIGRGIEYGLYESLNPCRGIKKFSEQAR-DRFLSGDELARF 213

Query: 183 KSFWS--EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELP 238
                    S  R  F   L +G R ++        L     I+ I   K GT   V L 
Sbjct: 214 FQALEQEPNSTARDFFLVALLTGARRANVLSMRWSDLDLKGQIWRIAETKNGTPQNVPLV 273

Query: 239 DGFMKLLAMTPIGKETFFIN-NDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATI 296
              +++L        +FF+     +  +  +    ++     AG+     H +R+   + 
Sbjct: 274 GPVLEILQDRRKATSSFFVFPGPGKTGHLVEPKKAWQRICQAAGIKGARIHDLRRTMGSW 333

Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324
            A  GA+   +  +   K+      Y +
Sbjct: 334 QAKTGASLPIIGKSLNHKSASTTSIYAR 361


>gi|297181069|gb|ADI17268.1| site-specific recombinase xerd [uncultured alpha proteobacterium
           HF0070_17D04]
          Length = 361

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 50/277 (18%), Positives = 98/277 (35%), Gaps = 24/277 (8%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKH 128
             L++E+ ++      LA NS  ++E      +         +       +R  +     
Sbjct: 62  DQLVTEFLQAMAADRGLAANSIAAYERDLASCLESLSQAGRHFDSCDADDLRCLLAEWTL 121

Query: 129 T---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +     S  + L+++R +  W V +     +PC  ++ PK+     +  ++E++    + 
Sbjct: 122 SGLAARSVARRLSALRQMMAWLVEERVRPDDPCRWIDNPKQPAALPKSLSEEEITALITA 181

Query: 186 WSEGSQPR------LAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELP 238
               +            E L  +GLR S+     V   +  + + I T K G    V + 
Sbjct: 182 ARALAPAAEALRMTAMLELLYATGLRVSELVSLPVDQFRRELEAVIVTGKGGKERLVAMG 241

Query: 239 DGFMKLLAMTPIGKETF--FINN------DKQKMNATQFSIWFKAKATKAGVN---KSAH 287
                  A     ++    F+ +       +  ++  QF+   K     AG++    S H
Sbjct: 242 TPARDATAAWMAARDATEAFVTSPYLFPFRESHVSRQQFAAALKRVGAAAGIDPRRVSPH 301

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            VR   AT   + GA    L    G   +   + YTK
Sbjct: 302 VVRHSFATHMLNRGADLRGLQMLLGHADISTTQIYTK 338


>gi|150004015|ref|YP_001298759.1| putative integrase [Bacteroides vulgatus ATCC 8482]
 gi|149932439|gb|ABR39137.1| putative integrase [Bacteroides vulgatus ATCC 8482]
          Length = 200

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 39/203 (19%), Positives = 76/203 (37%), Gaps = 20/203 (9%)

Query: 154 AINPCLSVERPKRKTEGIR--PWTKEDMQQFKSFWSEGSQP--RLAFEFLLYSGLRCSDS 209
           + +PC  +   K  ++ +R    + E++Q+  +   +   P  R AF F LY GLR  + 
Sbjct: 4   SKDPCKDIT-CKVDSQMLRKDVLSPEEVQKLMACHYDNENPTVRQAFIFCLYCGLRFCNV 62

Query: 210 CRAGVQHLQ--NNIFSIKTQKTG-----TIITVELPDGFMKLLAMTPIGKETFFINNDKQ 262
                +++   N +   +  K       + + + L DG + ++   P  K     +    
Sbjct: 63  KDLTFKNVDYANRLLKFEQSKAKEHSASSGVVIPLNDGLLSIIGEAPTDKNCLIFDLS-- 120

Query: 263 KMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
                      K    +AG++K  S H  R   A    + GA    + +  G   +   E
Sbjct: 121 --TYESCCKSVKRWVKRAGIDKHISWHLARHSFAVNILNNGANIKTVASLLGHSGLKHTE 178

Query: 321 TYTKGADRIRLGIKNSRRISSVV 343
            YT+  D  +L  +    +  + 
Sbjct: 179 KYTRAVD--KLKEEAINSLPELK 199


>gi|305666658|ref|YP_003862945.1| tyrosine type site-specific recombinase [Maribacter sp. HTCC2170]
 gi|88707463|gb|EAQ99707.1| tyrosine type site-specific recombinase [Maribacter sp. HTCC2170]
          Length = 363

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 43/258 (16%), Positives = 89/258 (34%), Gaps = 9/258 (3%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQ 135
            EY         A ++  ++ S+F+  I      +   I    IR+ ++   H   S   
Sbjct: 96  EEYLLKLELKRYANSTVRTYVSFFELFINHYKYKELNAINESDIRAFLQKLIHRNVSNSY 155

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195
              S+  + K+         N    +ERP+++++  +  +K+++       +   + R  
Sbjct: 156 LNQSINAI-KFYYEVVLGMPNRFYEIERPRKESKLPKVISKDEILTIIEN-TNNIKHRCI 213

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLLAMTPIG-- 251
            + L  SGLR S+     +  + +      +   K        L    +  L +      
Sbjct: 214 VQLLYGSGLRRSELLNLKINDVDSKRMLIHVSDSKGNKDRQTLLSKTCLHDLRLYFTKYR 273

Query: 252 -KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELM 308
            +   F     +K +        K+ A +A +    + H +R   AT   ++G     + 
Sbjct: 274 PQVYLFEGRYGKKYSGESVLSIVKSAAERARIRVRVTPHVLRHSFATHLLESGTDLRHIQ 333

Query: 309 ATYGWKTVDQAETYTKGA 326
              G  +    E YT  A
Sbjct: 334 VLLGHGSTKTTEIYTHVA 351


>gi|28871740|ref|NP_794359.1| site-specific recombinase, phage integrase family [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|66044722|ref|YP_234563.1| Phage integrase:Phage integrase, N-terminal SAM-like [Pseudomonas
           syringae pv. syringae B728a]
 gi|302185971|ref|ZP_07262644.1| Phage integrase:Phage integrase, N-terminal SAM-like protein
           [Pseudomonas syringae pv. syringae 642]
 gi|28854992|gb|AAO58054.1| site-specific recombinase, phage integrase family [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|63255429|gb|AAY36525.1| Phage integrase:Phage integrase, N-terminal SAM-like [Pseudomonas
           syringae pv. syringae B728a]
          Length = 320

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 52/277 (18%), Positives = 102/277 (36%), Gaps = 32/277 (11%)

Query: 84  WGSLA-VNSRISFESYFDQIIRKSGDF---DYRKITTKHI---RSGVESRKHTPSSAIQF 136
           + +L    +R ++++  +      G     ++R +T  H+   R+ +E R    ++  + 
Sbjct: 33  FANLDNPRTRRAYQNDLEDFCSFIGLASADEFRVVTRSHVLAWRAHLEHRGLAGATIRRK 92

Query: 137 LTSMRVLFKWAVRQE-YVAINPCLSVERPKRKT-EGIRPWTKED-----MQQFKSFWSEG 189
           L ++  LF   +        NP   V+RP+ ++ EG  P   +      ++       +G
Sbjct: 93  LAALASLFDHLLENNAIAGGNPVHGVKRPRIESNEGKTPALGDHQAKALLEAPDETTLKG 152

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKT-QKTGTIITVELPDG------ 240
            + R     LLY GLR  ++    V  +  +  I  +K   K G +  + L         
Sbjct: 153 QRDRALLAVLLYHGLRREEAALLQVSDIQERRGIQHLKVHGKGGKVRYLPLHPIAAGRIH 212

Query: 241 --FMKLLAMTPIGKETFFINNDKQ----KMNATQFSIWFKAKATKAGV---NKSAHGVRK 291
                        K   F+    +     + A        A A KAG+       HG+R 
Sbjct: 213 QYLENSEHHLAERKVPLFMPLRGKLTGAGITANGIYAVVTAYAKKAGIEVDGLGVHGLRA 272

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
            +AT + +  A   ++ A  G   +   + Y +  +R
Sbjct: 273 TAATNALEHEADIAKVQAWLGHANISTTKIYDRRENR 309


>gi|300726218|ref|ZP_07059671.1| tyrosine recombinase XerC [Prevotella bryantii B14]
 gi|299776415|gb|EFI72972.1| tyrosine recombinase XerC [Prevotella bryantii B14]
          Length = 293

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 39/275 (14%), Positives = 91/275 (33%), Gaps = 24/275 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISF-------ESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
           +I ++     +  + +  +  S+       +SYF+ +              +     +  
Sbjct: 2   IIEDFLDYLQFELNRSERTVQSYGDDLRAFQSYFEGLDDHLSWESVDSDVVRGWIELMMD 61

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           + ++ +S  + L+++R  +++A+ ++ V  +P   ++ PKR     +   + +M      
Sbjct: 62  KGNSATSINRRLSALRTFYRFALSRKRVESDPVHMIKGPKRGKPLPQFLKENEMNALLDT 121

Query: 186 WSEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPD 239
              G      + R        +G+R S+        +      +K T K      +   +
Sbjct: 122 AMHGESFYDVRDRTIIMTFYETGIRLSELIGLDDNDVDFQKGELKVTGKRNKQRIIPFGN 181

Query: 240 GFMKLLAM--------TPIGKETFFINNDKQKMNATQFSIWFKA--KATKAGVNKSAHGV 289
                L +                F++N   ++N  Q     +           +S H +
Sbjct: 182 ELASALTIYMKLRDEFIGNTSLALFVSNKGCRLNGNQVRYLVQKNLSRVSTLKKRSPHVL 241

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           R   AT   +  A    L    G  ++   E YT 
Sbjct: 242 RHTFATAMLNHEAGLESLKKLLGHASLSTTEIYTH 276


>gi|289428621|ref|ZP_06430304.1| phage integrase, N-terminal SAM domain protein [Propionibacterium
           acnes J165]
 gi|295131071|ref|YP_003581734.1| site-specific recombinase, phage integrase family
           [Propionibacterium acnes SK137]
 gi|289158019|gb|EFD06239.1| phage integrase, N-terminal SAM domain protein [Propionibacterium
           acnes J165]
 gi|291376498|gb|ADE00353.1| site-specific recombinase, phage integrase family
           [Propionibacterium acnes SK137]
          Length = 300

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 41/277 (14%), Positives = 93/277 (33%), Gaps = 27/277 (9%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVESRKHTPS 131
           + ++         + N+   + +    +       GD    +I T  +R+ +   +   +
Sbjct: 7   VEDFCGHLSALRRSPNTIRGYRADLIDLMGHAHSHGDDTLGRIGTSQVRAWLADTRVAGA 66

Query: 132 SAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI---------RPWTKEDM 179
           SA    +  ++ RV F+WA  +  ++ +P  ++   K                   +   
Sbjct: 67  SAATMQRRWSAARVFFRWAANEGLISADPTTALNSAKVPKRLPATLGVDQARHILDEAVA 126

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELP 238
           Q        G++     E L   GLR  + C   +  +  +  ++K T K     TV + 
Sbjct: 127 QARHDESPHGARDAAILEVLYGGGLRVGELCGLDLGDVDRSRRTVKVTGKGDKERTVPMG 186

Query: 239 DGFMKLLAMT---------PIGKETFFINNDKQKMNATQFSIWFK--AKATKAGVNKSAH 287
              ++ +            P   +  F+    ++++            +A     +   H
Sbjct: 187 APALRAIDTWLPRREEWVGPHSGQALFLGARGRRIDQRVVRRVVHTHLRAEPDSPDLGPH 246

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           G+R   AT   + GA    +    G +++   + YT 
Sbjct: 247 GLRHAMATHLLEGGADLRTVQDILGHESLATTQIYTH 283


>gi|71734696|ref|YP_277090.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|123761139|sp|Q48C04|XERC_PSE14 RecName: Full=Tyrosine recombinase xerC
 gi|71555249|gb|AAZ34460.1| tyrosine recombinase XerC [Pseudomonas syringae pv. phaseolicola
           1448A]
          Length = 299

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 37/259 (14%), Positives = 93/259 (35%), Gaps = 19/259 (7%)

Query: 85  GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIR---SGVESRKHTPSSAIQFLT 138
             ++ ++  ++     ++    +K+    +  +  +H+R   +    +  +  S  + L+
Sbjct: 16  RQVSPHTLEAYRRDLSKVLAYCQKAQRSSWNDLDIQHLRSFTARQHQQGQSSRSLARMLS 75

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRL 194
           ++R  +K+  R+     +P   +  PK +    +    +   Q      E      + + 
Sbjct: 76  AVRGFYKYLNREGICQHDPANGLSPPKGERRLPKTLDTDRTAQLLDGGVEDDFLAHRDQA 135

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV--------ELPDGFMKLLA 246
             E L  SGLR S+     +  L      ++    G+   V        +  + ++ L A
Sbjct: 136 ILELLYSSGLRLSELTGLNLDQLDLRDGLVQVLGKGSKTRVLPVGSKARQALEIWLPLRA 195

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAK-ATKAGVNKSAHGVRKFSATISADAGATAH 305
           +T    +  F++   +++      +  KA    + G N   H +R   A+   ++     
Sbjct: 196 LTNPQDDAVFVSQQGKRLGPRTIQVRLKAAGERELGQNLHPHMLRHSFASHLLESSQDLR 255

Query: 306 ELMATYGWKTVDQAETYTK 324
            +    G   +   + YT 
Sbjct: 256 AVQELLGHADIKTTQIYTH 274


>gi|312792896|ref|YP_004025819.1| integrase family protein [Caldicellulosiruptor kristjanssonii
           177R1B]
 gi|312180036|gb|ADQ40206.1| integrase family protein [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 392

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 51/323 (15%), Positives = 110/323 (34%), Gaps = 56/323 (17%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
           WL  +Y+K      ++ ++   +ES   + I    G +  + +  +H++  + + KH   
Sbjct: 77  WL-HQYKK----NQISESTFDDYESIIKNHINPVLGKYKLKDLRPEHLQ-MLYNEKHKAG 130

Query: 132 SAIQFLTSMRVLF----KWAVRQEYVAINPCLSVERPKRKTE-GIRPWTKEDMQQFKSFW 186
            + + +  + V+       A++   +  N   +   PK  +E  ++  T E+ ++F    
Sbjct: 131 LSTKRIKHIHVILHSALNQAIKNGLIVRNVSEATTLPKNTSEKEMKVLTVEEQKRFLQVL 190

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ-------------KTGT 231
            EG + + AF   L +G+R  +      + +   N   +I+               KT T
Sbjct: 191 -EGERLKPAFVLALTTGMRLGEILALKWKDVDLENKKITIRNSVRRIKNRNEQSEIKTKT 249

Query: 232 IIT------------VELPD----------GFMKLLAMTP----IGKETFFINNDKQKMN 265
           ++             + LPD             +          +     F       + 
Sbjct: 250 VLVLKEPKTENSGRIIPLPDVAYQELVNFKLLQEEEKRQAGSSYVDSGFVFTTKVGTPIE 309

Query: 266 ATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
              F   F     KAG+N + H +R   AT   +A      +    G   +      Y+ 
Sbjct: 310 PRNFLRTFYRITEKAGLNINFHALRHTFATRLLEANTNPKVVQELLGHSDISTTLNIYSH 369

Query: 325 GA-DRIRLGIKNSRRISSVVDSD 346
              D  +  I+    +   + ++
Sbjct: 370 VLFDTKQKAIEEIDNLMKNLTNE 392


>gi|146276169|ref|YP_001166328.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17025]
 gi|145554410|gb|ABP69023.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17025]
          Length = 413

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 62/353 (17%), Positives = 118/353 (33%), Gaps = 33/353 (9%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTP----KREYINSPRKKPTT 70
           R RH  +      G    + L    +     A  +A  G  P    K      P      
Sbjct: 43  RYRHAGVHRRMTLGGFPVLSLAQARQKA-REALAAASEGRDPAEEVKAAKAPKPENDRDK 101

Query: 71  LKWLISEYRK-SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RK 127
           +  +I  + K  A     A +    F+    +++ K G+ D R IT + +   ++    +
Sbjct: 102 VATVIDLFLKRHASRNRRADDVAAQFQR---EVLGKWGERDIRSITKRDVIDVLDGVVDR 158

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186
            +P SA +    +  LF WA  ++ + +NP   V+ P  +    R  T E+++       
Sbjct: 159 GSPISANRLRAHLNTLFNWAKSRDIIEVNPLDGVKPPAPEKPRDRVLTNEEIRLLWKVSG 218

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI--KTQKTGTIITVELPDGFMKL 244
             G      +  LL +G R  +      + +    +++     K G    + L     ++
Sbjct: 219 KMGYPFGDIYRLLLLTGQRLREVAELPWREIDGATWTLPGPRSKNGDEHVIPLSPEAREI 278

Query: 245 LAMTPIGKETFFINNDKQKMN-----ATQFSIWFKAKATK---AG------VNKSAHGVR 290
           +   P      F       ++       +        A +   AG         + H +R
Sbjct: 279 IEAAPKVGRFVFSTTGLTPVSGFTRAKERLDGLMADAANEDLPAGAEPVTVPPFTIHDLR 338

Query: 291 KFSATISADAGATAHELMATYGWKTVD---QAETYTK--GADRIRLGIKNSRR 338
           + +AT  A      H + A    ++      A  Y +   AD  R  ++   R
Sbjct: 339 RTAATGMAGLRFPPHVVEAVLNHRSGTRRGVAGVYNRFDYADEKRQALETWAR 391


>gi|240146968|ref|ZP_04745569.1| phage integrase [Roseburia intestinalis L1-82]
 gi|257200880|gb|EEU99164.1| phage integrase [Roseburia intestinalis L1-82]
          Length = 360

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 62/316 (19%), Positives = 108/316 (34%), Gaps = 30/316 (9%)

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYR 112
              +++ +NS R     L   +  Y +      L   +  +     +  II   G+    
Sbjct: 40  EYERQKKLNSSRSMDMKLSEFMEVYFEDKQ-NELKERTMKNKRYMMEQHIIPYFGNQMMS 98

Query: 113 KITTKHIRSGVESRKHTP--SSAIQFLTS-MRVLFKWAVRQEYVAINPCLSVER-PKRKT 168
           +I+   I       +      S ++ + + +  LF  A R   +  NPC  V+R     +
Sbjct: 99  EISASQIIQWQNEMQTKGFSESYLRMIQNQLTSLFTHASRIYDLHTNPCKKVKRMGNSDS 158

Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKT 226
             +  WT E+ QQF      G++  L FE L ++G R  +        +  + N  SI  
Sbjct: 159 RSLDFWTTEEYQQFIQTIEPGTRYYLIFEILFWTGCRIGELLALTPADINFERNQISITK 218

Query: 227 Q-------------KTGTII-TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW 272
                         KT   + T+E+P+   + +     G      N     +        
Sbjct: 219 TYYRTERKDVITEPKTKQSVRTIEIPEFLKQEIKQFIEGHYGMPENERLFPIVQEAVQHK 278

Query: 273 FKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIR 330
            K    KAGV K   H +R        + G     +    G K +     TY        
Sbjct: 279 MKQNMVKAGVKKIRVHDLRHSHVAYLINKGIEPILIKERLGHKDIRITLNTYGH------ 332

Query: 331 LGIKNSRRISSVVDSD 346
           L     RRI+ ++D++
Sbjct: 333 LYPNQQRRIADLLDNE 348


>gi|238760177|ref|ZP_04621324.1| Tyrosine recombinase [Yersinia aldovae ATCC 35236]
 gi|238701613|gb|EEP94183.1| Tyrosine recombinase [Yersinia aldovae ATCC 35236]
          Length = 263

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 40/237 (16%), Positives = 81/237 (34%), Gaps = 16/237 (6%)

Query: 104 RKSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
            + G   ++ +    +RS V   K      SS    L+++R    W V Q  +  NP   
Sbjct: 5   EQMGLAHWQTLDAAQVRSLVSRSKRAGLHASSLALRLSALRSFLDWMVSQGVLQANPARG 64

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217
           V  P+      +    +++ +            + R   E +  +GLR S+      +H+
Sbjct: 65  VSTPRSGRHLPKNIDVDEVDKLLDIDLNDPLAVRDRAMLEVMYGAGLRLSELVGMNCKHV 124

Query: 218 QNNIFSIKTQKTGT--------IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF 269
                 +     G+           V+    +++L  +     +  F+ N  ++++A   
Sbjct: 125 DLASGEVWVMGKGSKERKLPIGRTAVKWLAHWLELRELFEPQDDAIFLANTGKRISARNV 184

Query: 270 SIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              F     K GV  +   H +R   AT   ++      +    G   +   + YT 
Sbjct: 185 QKRFAEWGVKQGVSSHIHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTH 241


>gi|228923867|ref|ZP_04087144.1| Site-specific recombinase, phage integrase [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228948859|ref|ZP_04111134.1| Site-specific recombinase, phage integrase [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228810821|gb|EEM57167.1| Site-specific recombinase, phage integrase [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228835666|gb|EEM81030.1| Site-specific recombinase, phage integrase [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 322

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 46/284 (16%), Positives = 92/284 (32%), Gaps = 28/284 (9%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES---RKHTPSSAIQFLTSMRV 142
                +   +   F   +R+        IT KH++  +     R+  P++    +++++ 
Sbjct: 41  GFRKRTIDDYTKLFHYFMRELNIEKVEIITAKHVQMYINKLLSRELAPATINIRISALKS 100

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLAFEF 198
           +FK    Q Y+  NP +   + +     I       +++           G +   A   
Sbjct: 101 VFKRLHEQGYIKSNPAVDFVKLRTDEAPIFTLNNNQIKRLFRVVDKTTYAGYRDYCAMLL 160

Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQ----KTGTIITVELPDGFMKLLAMTPI---- 250
           +L+ GLR ++  +     L  +  +I       K      V +     + L M       
Sbjct: 161 MLHCGLRVNEVNQLEANDLDFDNLTIMLSGAKNKNRKTRAVPMTKKIAEELRMLIDESRE 220

Query: 251 ---GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK----SAHGVRKFSATISADAGAT 303
              G    F+  D   ++              AG++K    S H +R   AT     G +
Sbjct: 221 YFEGTTNVFLTQDGNSIDNDLLRKRMYRYGQLAGLSKECRPSPHSLRHTFATNFLRNGGS 280

Query: 304 AHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
            + LM   G   +     Y       RL  +  +     V + +
Sbjct: 281 VNALMRIMGHADITTTMRYV------RLNDEAVKEQYEKVAAKN 318


>gi|222529021|ref|YP_002572903.1| integrase family protein [Caldicellulosiruptor bescii DSM 6725]
 gi|222455868|gb|ACM60130.1| integrase family protein [Caldicellulosiruptor bescii DSM 6725]
          Length = 400

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 55/317 (17%), Positives = 106/317 (33%), Gaps = 48/317 (15%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVE 124
              TTLK  ++ +       +L  ++   +  Y ++ I    G +  + +  +H+++   
Sbjct: 69  PAKTTLKDWLNTWLWEYKKQTLRPSTFKDYLCYIERHINPAIGHYKLKDLRPEHLQALYN 128

Query: 125 SR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE-GIRPWTKEDMQ 180
           ++     + S+  Q  T +      A++   V  N   +   PK K +  IR  + E+ Q
Sbjct: 129 AKYQEGLSISTIKQIHTVLHSALDQALKNGLVNRNVSEATTLPKGKPKREIRILSLEEQQ 188

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQ----------- 227
           +F +   EG + + AF   L SGLR  +      + +  ++    ++             
Sbjct: 189 RFIAAL-EGERLKTAFLVELASGLRIGELLALRWKDVNFKDGYIEVRRSLQRVRIFDGGN 247

Query: 228 -----------KTGT-IITVELPD------------GFMKLLAMTPI--GKETFFINNDK 261
                      KT      V LP                + L    +    +  F     
Sbjct: 248 SKKTALAFQEPKTEAGKRIVPLPPVIIEELKQHRKKQLEEKLKAGALYEDNDLVFATELG 307

Query: 262 QKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
             ++   F   F     KAG++KS   H +R   AT   +A      +    G K +   
Sbjct: 308 TPIDPRNFERLFYRIREKAGLDKSVNFHALRHTYATRLLEANEHPKVVQELLGHKDISTT 367

Query: 320 -ETYTKGADRIRLGIKN 335
              Y+     I+     
Sbjct: 368 LNIYSHVMPEIKKAAAM 384


>gi|229164788|ref|ZP_04292620.1| DNA integration/recombination/invertion protein [Bacillus cereus
           R309803]
 gi|228618691|gb|EEK75685.1| DNA integration/recombination/invertion protein [Bacillus cereus
           R309803]
          Length = 370

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 44/269 (16%), Positives = 88/269 (32%), Gaps = 36/269 (13%)

Query: 91  SRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFLTSMRVLFKW 146
           +    + Y + +II   G+    K+T+ H+++ V S +       +  + +  +R   + 
Sbjct: 86  TAKVLKGYLNSRIIPSLGNIKLAKLTSLHMQNYVNSLRDDGLKRGTIEKIIKFIRNSLEH 145

Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRC 206
           A+  E +  N     + PK   E +  W ++++Q F     +G +  + F   L +G+R 
Sbjct: 146 AIDLELITKNVATKTKLPKGDKEELTVWNEQEVQLFLKAAQDG-RYSMVFHMALVTGMRQ 204

Query: 207 SDSCRAGVQHLQNNIFSIK--------------TQKTGTIITVELPDG-----FMKLLAM 247
            +      + +      +                 KT + +   L          K  A+
Sbjct: 205 GELLGLRWKDVDLEKGHLTISQTLSHDGKTFLLGGKTKSSLRKILLPASTVAGLKKHRAV 264

Query: 248 TPIGK----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATI 296
               K          +          +N         A   KA V K   H +R   AT+
Sbjct: 265 VLKEKLSQGEEYQDNDLVMCTPSGTPINPANVRRSLNALIRKAAVPKIRFHDLRHTHATL 324

Query: 297 SADAGATAHELMATYGWKTVDQA-ETYTK 324
               G     +    G   +    +TY+ 
Sbjct: 325 LLAKGVNVKVISERLGHSNIKITLDTYSH 353


>gi|170723132|ref|YP_001750820.1| integrase family protein [Pseudomonas putida W619]
 gi|169761135|gb|ACA74451.1| integrase family protein [Pseudomonas putida W619]
          Length = 340

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 58/331 (17%), Positives = 113/331 (34%), Gaps = 18/331 (5%)

Query: 3   PSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62
           PS+R    +     R        R+     +   +         + + + G   +  +++
Sbjct: 8   PSVRYHSAMAYYEKRGDAWRAQIRRKGYPTLSATF-DTKAEAQRWAAEIEGDMSRARFVD 66

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122
               + TTL   +  Y   +   S    ++            K        I +  + + 
Sbjct: 67  MREAESTTLDEALDRYL--SEVTSTKKGAKQEQVRIKKWKEHKLASKGLAAIRSSDMAAY 124

Query: 123 VES-RKHTPSSAIQFLT--SMRVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPWTKE 177
            ++  K   S+A   L    +  LF  A ++  +    NPC ++  PK   E  R  T  
Sbjct: 125 RDAELKEGKSTATVRLNLAVISHLFTVATKEWGIEGLTNPCRAIRMPKGSKERDRRPTPA 184

Query: 178 DMQQFKSFWSEGSQPRLAF-EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
           ++        + +     F E  + + +R S+       H++  +  ++  K G    V 
Sbjct: 185 ELTALYKAAGQMNAQLPVFIELAVETAMRRSELLMLRRDHVRGKVAYLEDTKNGERRAVP 244

Query: 237 LPDGFMKLLAM--TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFS 293
           L    + LL    TPIG   +F       +     S +F      AG+     H +R  +
Sbjct: 245 LSSRAIALLEGLPTPIGGGRYF------NLALNTISNYFPRACAAAGIEGLRLHDLRHEA 298

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324
            +   + G T  E+ +  G KT+   + YT 
Sbjct: 299 TSRFFERGFTMMEVASITGHKTLAMLKRYTH 329


>gi|138895723|ref|YP_001126176.1| integrase-recombinase protein [Geobacillus thermodenitrificans
           NG80-2]
 gi|196250982|ref|ZP_03149665.1| integrase family protein [Geobacillus sp. G11MC16]
 gi|134267236|gb|ABO67431.1| Integrase-recombinase protein [Geobacillus thermodenitrificans
           NG80-2]
 gi|196209546|gb|EDY04322.1| integrase family protein [Geobacillus sp. G11MC16]
          Length = 243

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 78/222 (35%), Gaps = 22/222 (9%)

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYV-AINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           E RK+ P S       M V F + + +  +   NP   +++ K +    +  T E++   
Sbjct: 5   EERKNNPVSLNTKRKLMSVFFNFLISEGLLNGDNPVKQLKKAKEEKTL-KTLTDEEVNSL 63

Query: 183 KSFWSEGSQPR----------LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
            + W +  + R            F  LL +G+R  + C    + +  +    K       
Sbjct: 64  IA-WLKRQKRRNNSFYTVRDYTIFVTLLGTGMRLGELCNLKWEDIDFSSQRAKIFGKARK 122

Query: 233 I-TVELPDGFMKLLAMTP------IGK--ETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
           + T+ L    +  LA+        +GK  E  F N   +++        FK    + G+ 
Sbjct: 123 VETIPLNSKLLSELALWKEYSSDSLGKLPEYVFTNIKGERLGENGTKQVFKRLTNETGIK 182

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
            S H +R   A    ++G     L       ++   E Y   
Sbjct: 183 VSPHMLRHTFARKFIESGGDVSVLSKLLRHSSIKTTEIYLHY 224


>gi|94309002|ref|YP_582212.1| site-specific tyrosine recombinase XerC [Cupriavidus metallidurans
           CH34]
 gi|93352854|gb|ABF06943.1| tyrosine-based site-specific tyrosine recombinase XerC [Cupriavidus
           metallidurans CH34]
          Length = 369

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 55/319 (17%), Positives = 104/319 (32%), Gaps = 45/319 (14%)

Query: 45  PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI-- 102
           PA   A             P   P  +++L  ++  ++    LA ++  S+      +  
Sbjct: 6   PARNRAHAVDEADEASAEKPAPDPLVVRYL--DWLATSR--KLAAHTLTSYGHDLSVLQS 61

Query: 103 --IRKSGDFDYRKITTKHIR---SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEY-VAIN 156
             IR +       + T+HIR   + +     +  +  + L++ R  + WA R  + V  N
Sbjct: 62  QAIRLAPGVALLALETRHIRSFAARLHGNGLSARTIARTLSAWRGFYLWAARHGHGVQSN 121

Query: 157 PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRA 212
           P   V  PKR     +  + E      +   + +    + +  FE    SGLR S+  + 
Sbjct: 122 PVDGVRAPKRGRPLPKALSVEHAVALVAHRQDDTNESLRDQAVFELFYSSGLRLSELIQL 181

Query: 213 -------------GVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM------------ 247
                        G   L     ++   K     TV +    ++ L              
Sbjct: 182 DVRYTEDGDYRSSGWLDLDGAEVTV-LGKGSRRRTVPVGSKAIQALKAWIHVREMMLRPG 240

Query: 248 -TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATA 304
             P      F+    +++  +      K +A  AGV      H +R   AT    +    
Sbjct: 241 ALPEDAHALFLGTRGRRLPISTVQQRIKRQALAAGVPSDVHPHMLRHSFATHMLQSSGDL 300

Query: 305 HELMATYGWKTVDQAETYT 323
             +    G  ++   + YT
Sbjct: 301 RAVQEMLGHASISTTQIYT 319


>gi|329118159|ref|ZP_08246871.1| site-specific tyrosine recombinase XerC [Neisseria bacilliformis
           ATCC BAA-1200]
 gi|327465819|gb|EGF12092.1| site-specific tyrosine recombinase XerC [Neisseria bacilliformis
           ATCC BAA-1200]
          Length = 308

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 47/274 (17%), Positives = 91/274 (33%), Gaps = 18/274 (6%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRKHTPSSA 133
           +EY ++      + ++  +      Q+ +   +      +         +     +  S 
Sbjct: 24  AEYLETLRSEGRSPHTLAACRRDLAQLAKLLPEHAEPLSRHDFAAALKKLSQSGASERSM 83

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF--KSFWSEGSQ 191
            + L+  R    + VR   +  NP   ++ PK      +    E +     ++   +   
Sbjct: 84  ARKLSVWRRYADYLVRHGLLDANPAGRLKAPKLPQLLPKAVDAEPLNALFDRAACDDALD 143

Query: 192 PR--LAFEFLLYSGLRCSDSCRAGVQH--LQNNIFSIKTQKTGTIITVELPDGFMKLL-- 245
            R    FE L  SGLR +++    V    ++     ++  K G    V L      +L  
Sbjct: 144 ARDLALFELLYGSGLRVAEAQALDVADVLIEEGWVGVR-GKGGKHRQVPLTGQCATVLAA 202

Query: 246 ----AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
                    G+   F N   +++   Q     +  A K G  +  S H +R   A+    
Sbjct: 203 YLPQRAAAAGETALFTNRLGRRLGIRQMQNRLRLWAVKNGSPQHISPHMLRHSYASHLLQ 262

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           +GA    +    G   +   + YTK  D  RL  
Sbjct: 263 SGAGIRAIQELLGHSDLAATQIYTK-LDFARLAE 295


>gi|330432804|gb|AEC17863.1| site-specific tyrosine recombinase XerC [Gallibacterium anatis
           UMN179]
          Length = 296

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 46/260 (17%), Positives = 92/260 (35%), Gaps = 21/260 (8%)

Query: 85  GSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLT 138
             L+  +  S++        ++   G  D+R++    IR  +   K +     S    L+
Sbjct: 17  RQLSAKTLQSYQQQIVACVELLTNEGITDWRQVDGSVIRFILTQGKKSGLHEHSLALRLS 76

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF---KSFWSEGSQPRLA 195
           S+R  F++ +R + + +NP   +  PK      +    E + Q    KS      + +  
Sbjct: 77  SLRGFFQFLLRNQQIKVNPTDGISAPKAGKRLPKSIDAESISQLLDIKSKDPLSLRDKAI 136

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLLA 246
            E +  SGLR S+     ++ +      +K    G    +          L       L 
Sbjct: 137 MELMYSSGLRLSELRGLNLEDINFKARELKVLGKGNKERILPFGRYAAGALHQWLEVRLQ 196

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATA 304
             P      FI++   ++ ++      +    K G+N     H +R   AT   +A +  
Sbjct: 197 FNP-QDNALFISHLGHRLTSSAIQQRLEQWGIKQGLNAHLNPHKLRHSFATHMLEASSDL 255

Query: 305 HELMATYGWKTVDQAETYTK 324
             +    G + +   + YT 
Sbjct: 256 RAVQELLGHENLSTTQIYTH 275


>gi|262038503|ref|ZP_06011872.1| putative integrase [Leptotrichia goodfellowii F0264]
 gi|261747372|gb|EEY34842.1| putative integrase [Leptotrichia goodfellowii F0264]
          Length = 356

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 66/353 (18%), Positives = 125/353 (35%), Gaps = 41/353 (11%)

Query: 15  RTRHGKIIYYFR---KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
           RTR     +Y+       G+R  +     +T   A            +  NS  +   TL
Sbjct: 2   RTRKIGKKWYYNFDIYIDGKRKIIEKVGGNTKKEAIEKGEIAKKDYEQTSNSFSQSIATL 61

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
             LI +YRK+     L  N++     YF+ II+  GD   +K+  +  +  +   K  P+
Sbjct: 62  SDLIEDYRKNYINIFLRENTKRIRNYYFNIIIKDIGDTKLQKMNVRFFQDYIVKTKD-PN 120

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           +  +FL S   LF +AVR E ++ NP  +V  PK +       T ED++  K+       
Sbjct: 121 NIKKFLNS---LFNYAVRVELISKNPIKNVIVPKAEKIDFDLITPEDIEIIKNM-EIREV 176

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQ-------------KTGTIITVE 236
            +    F+  +G+R S+      +++  ++   SI+                  +   + 
Sbjct: 177 LKDFILFIYLTGVRPSEGLALEFKNINFKDKTISIERSINKYKRNLFEPLKNNSSKRKIL 236

Query: 237 LPDGFMKLLAMTPIG-------------KETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
             D    +                     +  F N+       + F+        K  +N
Sbjct: 237 FNDIIEDIFTRRKSAIEKLIDKSEGYYKSDLIFANSKGNTFIISDFNKEKYKIKEK--IN 294

Query: 284 KSAH--GVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGI 333
           K+ H   +R    T+  + G     +    G   +    E Y    ++++  +
Sbjct: 295 KNFHFRALRHMHTTLLIEKGVNIKAVQERLGHADIKTTLEVYAHVTEKMKKEV 347


>gi|170781657|ref|YP_001709989.1| site-specific tyrosine recombinase XerD [Clavibacter michiganensis
           subsp. sepedonicus]
 gi|169156225|emb|CAQ01367.1| putative XerD-family recombinase [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 328

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 50/305 (16%), Positives = 96/305 (31%), Gaps = 32/305 (10%)

Query: 52  TGSTPKREYINSPRKKPTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS---G 107
               P     ++  + P  L+  +  + +       L+ N+  ++     +        G
Sbjct: 4   AADGPGGAAPDTAPEVPVALRRAVDRWLRHVEVERGLSRNTIQAYRRDLARYTAHLAAEG 63

Query: 108 DFDYRKITTKHIRSGVESRKH------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV 161
             D    T+ H+    +  +       T SS  + L+S+R   ++ V +  V ++     
Sbjct: 64  VADPADATSAHVAGFAQRVRDPEQGGLTASSLARMLSSVRSFHRFLVEEGIVEVDVSAEQ 123

Query: 162 ERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217
           + PK  +   +  + E M +             + +   E L  +G R S+     V  +
Sbjct: 124 KPPKLPSRLPKAVSVETMGRILDATDGDEPLRVRDKALLELLYATGARVSEITALTVDDV 183

Query: 218 QN-----NIFSIKTQKTGTIITVELPDGFMK-----------LLAMTPIGKETFFINNDK 261
                          K G    V +     +           +LA         F+    
Sbjct: 184 LGPDGAAAEIVRVVGKGGKQRIVPVGSFARRAVDAYLVRVRPILAARGSATPALFLGLRG 243

Query: 262 QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
             ++     +  KA A +AGV    S H  R   AT     GA    +    G  +V   
Sbjct: 244 HALSRQNAWLVIKAAAERAGVTEEISPHIFRHSFATHLIAGGADVRVVQELLGHSSVATT 303

Query: 320 ETYTK 324
           + YT+
Sbjct: 304 QIYTR 308


>gi|251797061|ref|YP_003011792.1| integrase family protein [Paenibacillus sp. JDR-2]
 gi|247544687|gb|ACT01706.1| integrase family protein [Paenibacillus sp. JDR-2]
          Length = 305

 Score =  113 bits (282), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 43/290 (14%), Positives = 94/290 (32%), Gaps = 22/290 (7%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP- 130
             L   +R           ++  +       +         +    H+ S + S++    
Sbjct: 12  GKLTQAFRIWMKQAGYTDTTQKEYMREAYAYLESLEGAAAEQAGKMHVISFLISKQRGAG 71

Query: 131 -SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP-WTKEDMQQFKSFWSE 188
             +  + L+++R  +   +  E    NP + V++ K +         ++++    S    
Sbjct: 72  DRARNRTLSAIRSFYTALIDFEMATRNPAMEVKKSKTEKNKKPVYLEEDELASSLSCIEG 131

Query: 189 GSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLL 245
             + R    F  + Y GLR  +  R           +I+   K      + +P+    +L
Sbjct: 132 RYRARNVAIFLLMSYCGLRVGEVHRLNRSDFNPVRGTIEVFGKGRKWNEIPVPEELAAVL 191

Query: 246 AMTPIGKET--------FFINNDKQKMNATQFSI-------WFKAK-ATKAGVNKSAHGV 289
           +     + T        FF++   ++++  Q           FK+     A    S H +
Sbjct: 192 SEVAQDRITPYKEQEDAFFVSQKGRRLSIRQIQKIAGQTFEAFKSINPHAANKKLSCHKL 251

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
           R   ATI    G     +    G  +++    YT   D  +     + R+
Sbjct: 252 RHTFATILLKNGVDIRVVKELLGHASIETTMIYTHVNDDQKKEAMATIRL 301


>gi|167644692|ref|YP_001682355.1| integrase family protein [Caulobacter sp. K31]
 gi|167347122|gb|ABZ69857.1| integrase family protein [Caulobacter sp. K31]
          Length = 308

 Score =  113 bits (282), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 47/289 (16%), Positives = 101/289 (34%), Gaps = 31/289 (10%)

Query: 69  TTLKWLISEYRKSAH-WGSLAVNSRISFESYF---DQIIRKSGDFDYRKITTKHIR-SGV 123
            +    I  + +      + A N+  ++E         +   GD D           + +
Sbjct: 3   ASASGWIDAFLEMMAVERAAARNTLTAYEKDLADARLFLASRGDLDGASAEAIEAYFADL 62

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
            +R  +P++A +  +++R  +++ + + +   +P   VE PK      +  +++ + +  
Sbjct: 63  GARGLSPATAARRRSALRQFYRFVLGEGWRDDDPSRRVEAPKAGRPLPKVLSRDAVLRLI 122

Query: 184 SFW-----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-QNNIFSIKTQKTGTIITVEL 237
           +       ++G +     E L  SGLR S+     +  L ++  F +   K G      L
Sbjct: 123 AAAAAKDGAQGLRLACMIELLYASGLRISELLNLPLAALARDPAFLMVKGKGGKERLAPL 182

Query: 238 PDGFMKLLAMTPIGKETFFI-----------------NNDKQKMNATQFSIWFKAKATKA 280
            D     +      +  F                        ++ A + S   +  A  A
Sbjct: 183 NDAARTAVKAYLEARPQFLPKGAPNGGVKDSPWLFPSRAKSGRLTARRVSQLLEDAAIAA 242

Query: 281 GVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           G+++   S H +R   AT   + GA    +    G   +   + YT  A
Sbjct: 243 GIDRQTVSPHVLRHAFATHLLEGGADLRVIQTLLGHADIATTQIYTHVA 291


>gi|330970503|gb|EGH70569.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           aceris str. M302273PT]
          Length = 299

 Score =  112 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 37/259 (14%), Positives = 93/259 (35%), Gaps = 19/259 (7%)

Query: 85  GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIR---SGVESRKHTPSSAIQFLT 138
             ++ ++  ++     ++    +K+    +  +  +H+R   +    +  +  S  + L+
Sbjct: 16  RQVSPHTLEAYRRDLGKVLAYCQKAQVSSWSDLDIQHLRSFTARQHQQGQSSRSLARMLS 75

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRL 194
           ++R  +K+  R+     +P   +  PK +    +    +   Q      E      + + 
Sbjct: 76  AVRGFYKYLNREGICQHDPANGLSPPKGERRLPKTLDTDRAAQLLDGGVEDDFLAHRDQA 135

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV--------ELPDGFMKLLA 246
             E L  SGLR S+     +  L      ++    G+   V        +  + ++ L A
Sbjct: 136 ILELLYSSGLRLSELTGLNLDQLDLRDGLVQVLGKGSKTRVLPVGSKARQALEVWLPLRA 195

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAK-ATKAGVNKSAHGVRKFSATISADAGATAH 305
           +T    +  F++   +++      +  KA    + G N   H +R   A+   ++     
Sbjct: 196 LTNPQDDAVFVSQQGKRLGPRAIQVRLKAAGERELGQNLHPHMLRHSFASHLLESSQDLR 255

Query: 306 ELMATYGWKTVDQAETYTK 324
            +    G   +   + YT 
Sbjct: 256 AVQELLGHADIKTTQIYTH 274


>gi|293374710|ref|ZP_06621018.1| tyrosine recombinase XerC [Turicibacter sanguinis PC909]
 gi|325840598|ref|ZP_08167079.1| tyrosine recombinase XerC [Turicibacter sp. HGF1]
 gi|292646624|gb|EFF64626.1| tyrosine recombinase XerC [Turicibacter sanguinis PC909]
 gi|325490247|gb|EGC92580.1| tyrosine recombinase XerC [Turicibacter sp. HGF1]
          Length = 301

 Score =  112 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 38/276 (13%), Positives = 101/276 (36%), Gaps = 25/276 (9%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVESRK 127
            I +Y     +    + ++ +++E    +           +F++     +   +   + +
Sbjct: 4   WILKYMDYLKYEKRYSEHTLLNYERDVKEWFSFCQREGINEFEFDYSDVRSYLNDCYTHQ 63

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            + S+  + L+S+R  +++ ++++ V  NP L ++ PK+     +   +E++Q       
Sbjct: 64  LSRSTMSRKLSSLRSYYQFLLKEKQVKQNPFLIMKGPKKAETLPQFLYEEELQALFDSID 123

Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGFM 242
                G +     E L  +G+R S+ C+     L   + ++    K G    V + +  +
Sbjct: 124 QTSILGCRNYALLELLYGTGIRVSECCQMKQSQLNVELGTVLIHGKGGKDRYVPIGEFAV 183

Query: 243 KLLAM------------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAG--VNKSAHG 288
           + +              + +  +  F+N+    +              +    +  + H 
Sbjct: 184 EAIEAYLQRSRPQLLKKSNLETDVLFLNHLGTPLTERGVRDILSRMTNQTAKHIKVAPHM 243

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +R   AT   + GA    +    G + +   + YT 
Sbjct: 244 IRHTFATHLLNNGADLRSVQELLGHENLSSTQIYTH 279


>gi|254451038|ref|ZP_05064475.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198265444|gb|EDY89714.1| phage integrase [Octadecabacter antarcticus 238]
          Length = 317

 Score =  112 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 44/260 (16%), Positives = 87/260 (33%), Gaps = 23/260 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFD--YRKITTKHIRSGVESRKHTPSSAIQFLTSMRV 142
            +L   S+ S +    +     G           K+ +  +     +  +  Q +T ++ 
Sbjct: 39  RNLGPASQSSHQRACKRFAAWLGRSPETATPDDVKYFQQHLVESGVSICTRNQTMTGVKF 98

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202
           LF+  +R+     +    +   K   +     +K+++++  +      + R+        
Sbjct: 99  LFRVTLRR----HDLVAEIFHLKEPVKVPLVLSKKEIKRILAMAPS-LKARVMLSLAYGC 153

Query: 203 GLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAM------------T 248
           G+R  +  R  V  +     I  I   K      V LP   + +L               
Sbjct: 154 GMRAGEVVRLKVGDIDSAQKIIRIVQAKGRKDRNVMLPSDILGMLREWWKERPTGQDKDL 213

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHE 306
           P  +   F     + ++A Q S  FK  A +AG+ K  + H +R   AT   + G     
Sbjct: 214 PTPERVLFPGYRGKHLSARQISRLFKETAREAGITKPVTLHTLRHSFATHLLERGVDIRV 273

Query: 307 LMATYGWKTVDQAETYTKGA 326
           + A  G   +     Y   A
Sbjct: 274 IQALLGHSKLTTTARYASVA 293


>gi|150003403|ref|YP_001298147.1| tyrosine type site-specific recombinase [Bacteroides vulgatus ATCC
           8482]
 gi|254881306|ref|ZP_05254016.1| tyrosine type site-specific recombinase [Bacteroides sp. 4_3_47FAA]
 gi|294777807|ref|ZP_06743251.1| putative tyrosine recombinase XerC [Bacteroides vulgatus PC510]
 gi|319640308|ref|ZP_07995033.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_40A]
 gi|149931827|gb|ABR38525.1| tyrosine type site-specific recombinase [Bacteroides vulgatus ATCC
           8482]
 gi|254834099|gb|EET14408.1| tyrosine type site-specific recombinase [Bacteroides sp. 4_3_47FAA]
 gi|294448261|gb|EFG16817.1| putative tyrosine recombinase XerC [Bacteroides vulgatus PC510]
 gi|317388083|gb|EFV68937.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_40A]
          Length = 293

 Score =  112 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 38/265 (14%), Positives = 92/265 (34%), Gaps = 24/265 (9%)

Query: 76  SEYRKSAHW-GSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSG---VESRK 127
             +     +  + +  + +S+     +            D+  +    +R     +    
Sbjct: 4   DSFLDYLRFEKNYSEKTIVSYGIDLTKFEEYFKGKDEKVDFTTVDADLVRGWVMNLMENG 63

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           +T +S  + L+S+R  +++ +++  +  +P L +  PK K        + +M +      
Sbjct: 64  YTSASVNRKLSSLRSFYRFLLKKGVIEEDPMLKIIGPKNKKPLPVFLKEREMDRLLDDVP 123

Query: 188 -----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGF 241
                 G + R+  E    +G+R S+        +  + F IK T K      +   +  
Sbjct: 124 FKEDFTGCRDRMVLEMFYATGMRLSELIGLNDVDVDFSAFLIKVTGKRNKQRLIPFGEEL 183

Query: 242 MKLL--------AMTPIGKETFFINNDKQKMNATQFSIWFKA--KATKAGVNKSAHGVRK 291
            + +         + P   E FF+  + ++M   +  +  K       +   +S H +R 
Sbjct: 184 RRAMSVYLKIRNEVLPGKAEAFFVLKNGKRMYPGKVYLLVKRNLSKVVSLKKRSPHVLRH 243

Query: 292 FSATISADAGATAHELMATYGWKTV 316
             AT   +  A    +    G  ++
Sbjct: 244 TFATAMLNNEAELGAVKELLGHSSL 268


>gi|294778055|ref|ZP_06743489.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
 gi|294448113|gb|EFG16679.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
          Length = 200

 Score =  112 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 38/203 (18%), Positives = 75/203 (36%), Gaps = 20/203 (9%)

Query: 154 AINPCLSVERPKRKTEGIR--PWTKEDMQQFKSFWSEGSQP--RLAFEFLLYSGLRCSDS 209
           + +PC  +   K  ++ +R    + E++Q+  +   +   P  R AF F LY GL   + 
Sbjct: 4   SKDPCKDITY-KVDSQMLRKNVLSPEEVQKLMACHYDNENPTVRQAFIFCLYCGLHLCNV 62

Query: 210 CRAGVQHLQ--NNIFSIKTQKTG-----TIITVELPDGFMKLLAMTPIGKETFFINNDKQ 262
                +++   N +   +  K       + + + L DG + ++   P  K     +    
Sbjct: 63  KDLTFKNVDYANRLLKFEQSKAKGHSASSGVVIPLNDGLLSIIGEAPTDKNCLIFDLS-- 120

Query: 263 KMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
                      K    +AG++K  S H  R   A    + G     + +  G   +   E
Sbjct: 121 --TYESCYKSVKRWVKRAGIDKHMSWHCARHSFAVNILNNGTNIKTIASLLGHSGLKHTE 178

Query: 321 TYTKGADRIRLGIKNSRRISSVV 343
            YT+  D  +L  +    +S + 
Sbjct: 179 KYTRAVD--KLKEEAINSLSELK 199


>gi|253997561|ref|YP_003049625.1| tyrosine recombinase XerC [Methylotenera mobilis JLW8]
 gi|253984240|gb|ACT49098.1| tyrosine recombinase XerC [Methylotenera mobilis JLW8]
          Length = 293

 Score =  112 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 41/271 (15%), Positives = 85/271 (31%), Gaps = 22/271 (8%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKI---TTKHIRSGVESRKHTP 130
           +  Y +   +   L+  + I++      +   +   D + I     +     + +R+ + 
Sbjct: 4   LDAYIQHLTFERGLSQLTCINYRRDISLLESLAEAADLQTISHAQIRRFIGKLHARELSS 63

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
            S  + L++ R  + + +       NP   +  PK      +  + +    F      G+
Sbjct: 64  KSIARALSAWRGFYDYLIHHHGYTQNPVHGLRAPKAAKTLPQALSVDQAVNFVDIQGGGT 123

Query: 191 ---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPD------ 239
              +     E    SGLR ++     +  L   +    +  +   T I V L        
Sbjct: 124 LDLRDHAILELFYSSGLRLAELVNLDIDRLDFTDGTVEVIGKGNKTRI-VPLGSHAAEAM 182

Query: 240 ----GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK--AGVNKSAHGVRKFS 293
                   L+      K+  FI    +++         KA A K  A  N   H +R   
Sbjct: 183 QKWLQARALIPTAETNKQAVFITQQGKRITPRAVQYRVKAWAIKQGADSNLHPHMLRHSF 242

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324
           A+    +      +    G   +   + YT 
Sbjct: 243 ASHVLQSSQDLRAVQEMLGHANISTTQVYTH 273


>gi|153807716|ref|ZP_01960384.1| hypothetical protein BACCAC_01998 [Bacteroides caccae ATCC 43185]
 gi|160886162|ref|ZP_02067165.1| hypothetical protein BACOVA_04169 [Bacteroides ovatus ATCC 8483]
 gi|160889100|ref|ZP_02070103.1| hypothetical protein BACUNI_01521 [Bacteroides uniformis ATCC 8492]
 gi|149129325|gb|EDM20539.1| hypothetical protein BACCAC_01998 [Bacteroides caccae ATCC 43185]
 gi|156108047|gb|EDO09792.1| hypothetical protein BACOVA_04169 [Bacteroides ovatus ATCC 8483]
 gi|156861567|gb|EDO54998.1| hypothetical protein BACUNI_01521 [Bacteroides uniformis ATCC 8492]
          Length = 327

 Score =  112 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 45/279 (16%), Positives = 99/279 (35%), Gaps = 15/279 (5%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           LI  +  +      +  S   + S  +  IRK  + + R ITT  +R+ +   + T  + 
Sbjct: 52  LIDSFLSAKRVEGCSDKSMHYYRSTLNNAIRKI-EKNIRHITTDDLRNYLNDYQQTSGAT 110

Query: 134 ----IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
                     +   F W   ++Y+  +P   + + K        ++ E ++Q +    EG
Sbjct: 111 KVTVDNIRRILSSFFSWLEDEDYIVKSPVRRIHKVKVGKTVKETYSDEALEQMRDHC-EG 169

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDG----FMKL 244
            +     + L  +G+R  +  +     +   N   I T K      V           + 
Sbjct: 170 IRDLALIDLLASTGMRVGELVKLNRNDIDFENRECIVTGKGDKQRRVYFDARTKIHLQRY 229

Query: 245 LAMTPIGKETFFIN--NDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG 301
           LA         F++      ++  +   I  +    +  + K   H  R+  AT++ D G
Sbjct: 230 LAERIDDNPALFVSLLAPYDRLQISGVEIRLRRLGRELNIPKVHPHKFRRTLATMAIDKG 289

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
               ++    G +++D    Y    ++  + + + + I 
Sbjct: 290 MPIEQVQHLLGHQSLDTTLQYA-MVNQTNVKMSHRKFIG 327


>gi|206889998|ref|YP_002248163.1| site specific recombinase [Thermodesulfovibrio yellowstonii DSM
           11347]
 gi|206741936|gb|ACI20993.1| site specific recombinase [Thermodesulfovibrio yellowstonii DSM
           11347]
          Length = 345

 Score =  112 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 48/323 (14%), Positives = 100/323 (30%), Gaps = 26/323 (8%)

Query: 17  RHGKIIYYFRKGHGRRIRL--PYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           + G I ++     G++ R              Y  AL     + +      +   +    
Sbjct: 5   KRGNIWWFSVTIKGKQFRFSTKTTDRKKATEIYAKALL----ELDNPTKDVENQISFGEF 60

Query: 75  IS-EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPS 131
              +Y   +        S  S + YF  I          +ITT+ I        +  TP+
Sbjct: 61  FENQYLPFSE----RQASHQSKKYYFKVIPEWFKKIPINQITTRDIELLQGDLLKGRTPA 116

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINP---CLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           S  + + +++   + A   E            V+  K + + +R  + E+  +       
Sbjct: 117 SVNRIIATIKHSLRKAYEWELTEEETLKRVQRVKPLKGEVQRLRFLSLEECHKLIEVAEP 176

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTGTIITVELPDGF----M 242
             +P       L +G+R  +        +        ++  K G    + + D       
Sbjct: 177 HLKP--IIITALNTGMRKGEILSLTWSQIDLKHGFIHLEKTKNGERRDIPMNDTLKILFR 234

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAG 301
            L+    +  +  F+N +  K         F+    +AG+ +   H +R   A+     G
Sbjct: 235 DLIKNRRLDSDYVFLNPETGKRLTD-IKRSFRTACKRAGITDFRFHDLRHTFASHLIMNG 293

Query: 302 ATAHELMATYGWKTVDQAETYTK 324
                +    G KT+     Y+ 
Sbjct: 294 VDLKTVQELLGHKTIKMTLKYSH 316


>gi|118476848|ref|YP_893999.1| integrase [Bacillus thuringiensis str. Al Hakam]
 gi|118416073|gb|ABK84492.1| integrase [Bacillus thuringiensis str. Al Hakam]
          Length = 382

 Score =  112 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 48/322 (14%), Positives = 97/322 (30%), Gaps = 44/322 (13%)

Query: 45  PAYMSALTGSTPKREYINSPRKKPT----TLKWLISEYRKSAHWGSLAVNSRISFESYF- 99
             ++ + TG   K +   +  +       T + L + Y  +     L   +  + + YF 
Sbjct: 40  RRFILSRTGKRGKAKLSRTSIEVTQIETYTFQELFNIYMFAKEAEGLVRKTLENKKGYFL 99

Query: 100 ---DQIIRKSGDFDYRKITTKHIRSGVESRKH--------------------TPSSAIQF 136
                +     D     + T  IR  +   K+                    + S     
Sbjct: 100 VFHRYLEEHHEDVTPNTLDTNTIREFLYYLKNDHVKHKNNHCVKEKYKSVGVSVSYINTI 159

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FWSEGSQP 192
           +  MR  + + V +EYV +NP   ++  K   + I   + + ++            G + 
Sbjct: 160 MKHMRAFYNFLVEEEYVQLNPFTKIKSLKEVQDNIEALSVDQLKTLLKQPNQRTYAGFRD 219

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTI--ITVELPDGFMKLLAMT 248
            +    L  +G+R S++     + +    N+  +K   T       V +     KLL   
Sbjct: 220 YVLMMLLADTGMRISEALNLQQEDIDFKTNVIELKGTNTKNRKTRYVPISQKTSKLLREL 279

Query: 249 PI-----GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATISADA 300
            +          F       ++  +F    K     +G+     S H  R   A      
Sbjct: 280 LVEIEEFDTLHIFATVYGNTIDPARFRQRLKMYGNNSGIKGVRVSPHTFRHTFAKYYLLN 339

Query: 301 GATAHELMATYGWKTVDQAETY 322
                 L    G  +++    Y
Sbjct: 340 NGDVMTLQKILGHSSIEMVRKY 361


>gi|116749926|ref|YP_846613.1| phage integrase family protein [Syntrophobacter fumaroxidans MPOB]
 gi|116698990|gb|ABK18178.1| phage integrase family protein [Syntrophobacter fumaroxidans MPOB]
          Length = 381

 Score =  112 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 59/331 (17%), Positives = 111/331 (33%), Gaps = 34/331 (10%)

Query: 22  IYYFRKGHGRRIRLPYPHESTFIPAYMSALT-GSTPKREYINSPRKKPT----------- 69
           IYY R   G ++ +       F     +A   G   KR   + P  +             
Sbjct: 29  IYYIRYRRGGKL-IEEKAGRQFRDDMSAARAAGIRAKRMEGDQPTNEERREAEREVKERW 87

Query: 70  TLKWLISEY-RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-- 126
           T+  L  EY R +     +          +   I    GD +  ++    +         
Sbjct: 88  TITRLWEEYKRGTPGLKGIV----TDENRFSKHIKPIFGDKEPGELVPLDVDRLRVKMLK 143

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL--SVERPKRKTEGIRPWTKEDMQQFKS 184
            H P++    L  +R +  + VR++     PCL   +  P+ + E     T +++ +   
Sbjct: 144 THKPATVRNALELLRRIVNFGVRKQLC---PCLSFQIPMPRVRNEKTEDLTPDELARLLK 200

Query: 185 FWSE--GSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDG 240
             SE   +Q     +  L++G+R  +  +     +       SI+  K G    + L + 
Sbjct: 201 ALSEEPNTQVAHIVKLALFTGMRRGEILKLRWTDIDLDRGFISIRDPKGGVDQRIPLSES 260

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA---HGVRKFSATIS 297
             ++LA  P   ++ F+   +     T  +         A + K     HG+R   A+  
Sbjct: 261 ARRILANHP-KTDSLFVFPGRNGAQRTDINKSLNRIKEAAELPKDFRMLHGLRHAFASSL 319

Query: 298 ADAG-ATAHELMATYGWKTVDQAETYTKGAD 327
           A +G    + L      K+      Y    D
Sbjct: 320 ASSGEVDMYTLQKLLTHKSPTMTARYAHLRD 350


>gi|289550957|ref|YP_003471861.1| Site-specific tyrosine recombinase [Staphylococcus lugdunensis
           HKU09-01]
 gi|315658459|ref|ZP_07911331.1| tyrosine recombinase XerC [Staphylococcus lugdunensis M23590]
 gi|289180489|gb|ADC87734.1| Site-specific tyrosine recombinase [Staphylococcus lugdunensis
           HKU09-01]
 gi|315496788|gb|EFU85111.1| tyrosine recombinase XerC [Staphylococcus lugdunensis M23590]
          Length = 297

 Score =  112 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 36/267 (13%), Positives = 94/267 (35%), Gaps = 21/267 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
            + + ++  S+     Q              +     ++  S + ++    ++  + +++
Sbjct: 16  RNFSDHTIKSYHDDLMQFNEFLAQEMLTLSTFEYKDARNYLSYLYNKNLKRTTVSRKIST 75

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195
           +R  +++ + Q+   INP + +  PK++    + + + +M            +G + R+ 
Sbjct: 76  LRSFYEYWMTQDETVINPFVQLVHPKKEQYLPQFFYEAEMDALFETVLHDAKKGLRDRVI 135

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE--------LPDGFMKLLA 246
            E L  +G+R S+        +   +  +K   K      +         +    ++   
Sbjct: 136 LELLYSTGMRVSELVHIKKMDIDLTLPGVKVLGKGSKERFLPFGEFCKQSIEQYLLEFGP 195

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATK-AGV-NKSAHGVRKFSATISADAGATA 304
           +         +N + Q +              + AGV +   H +R   AT   + GA  
Sbjct: 196 VKQNDHPFLLVNMNGQPITERGVRYVLNDIVKRTAGVTDIHPHKLRHTFATHLLNQGADL 255

Query: 305 HELMATYGWKTVDQAETYTKGA-DRIR 330
             + +  G   +     YT  + D++R
Sbjct: 256 RTVQSLLGHVNLSTTGRYTHVSKDQLR 282


>gi|225175140|ref|ZP_03729136.1| integrase family protein [Dethiobacter alkaliphilus AHT 1]
 gi|225169316|gb|EEG78114.1| integrase family protein [Dethiobacter alkaliphilus AHT 1]
          Length = 386

 Score =  112 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 63/375 (16%), Positives = 125/375 (33%), Gaps = 62/375 (16%)

Query: 11  VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
           V   +   GK  Y F  G  +                  A+  +  K E         TT
Sbjct: 23  VVIGKDEQGKTKYQFFYGKTK-------------AEVTKAVKEAVGKVEKGIDINAGKTT 69

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH- 128
                  +  S    ++  ++  ++E+++   I    G     KI   H++  ++ ++  
Sbjct: 70  FTEWFEIWLASKK-NNIKPSTYDTYETFWRVHIKSALGHMKLDKIQPHHVQKLLDEKQGG 128

Query: 129 --TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS--VERPK-RKTEGIRPWTKEDMQQFK 183
             +P S     T++    K A++Q  ++ NP  +  +E PK  K + ++P T++D++ F 
Sbjct: 129 ELSPRSVRYIHTTINTALKSALKQRIISFNPADAELLELPKNTKIKEVKPLTQDDVKAFI 188

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----------------NNIFSIKTQ 227
           +   E  +  +A+   L  G+R  +      +++                      + T 
Sbjct: 189 ATAKE-DKFSVAYILSLALGMRKGEVLGLQWENIDFEQKTLTIKNNLTRVKGKGLVLTTP 247

Query: 228 KTGTIITVELPDG-----FMKLLAMTPIGKE----------------TFFINNDKQKMNA 266
           KT +   V L          +      + +E                  F   + + +  
Sbjct: 248 KTASSNRVVLLPEKILTLLSEHGRKQAVEREIAKASGKYSEAEGFDNMVFTYEEGKPVCP 307

Query: 267 TQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTK 324
             F   FK    KAG+     H +R    T+  +AG     + AT G          YT+
Sbjct: 308 RYFERKFKKVLEKAGLSQAGLHSLRHSYGTLQNEAGVNMKAIQATLGHSKASFTMSVYTQ 367

Query: 325 -GADRIRLGIKNSRR 338
              +  R   +   +
Sbjct: 368 NTTELQREATQAVDK 382


>gi|85859268|ref|YP_461470.1| integrase/recombinase [Syntrophus aciditrophicus SB]
 gi|123725256|sp|Q2LT92|XERC_SYNAS RecName: Full=Tyrosine recombinase xerC
 gi|85722359|gb|ABC77302.1| integrase/recombinase [Syntrophus aciditrophicus SB]
          Length = 310

 Score =  112 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 47/296 (15%), Positives = 105/296 (35%), Gaps = 37/296 (12%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD-------------FDYRKITTKHI 119
           LI E+ +      +L+ ++R ++ S  +Q      +              +   +  +  
Sbjct: 4   LIKEFDRYMDLERNLSTHTRKNYLSDLNQFKIYLEENHRVPTELKTEAWQNVDYMMVRAF 63

Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
              +  R+    +  + L S+R  FK+  ++  +  NP  +V  P+ +       + +++
Sbjct: 64  LGALYRRRVKKVTIARKLASLRAFFKYLHQKRKIQCNPLEAVSTPRTEKYIPAVLSVDEI 123

Query: 180 QQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTII 233
               +        G + R   E    SG+R S+      + +     +  I+  K     
Sbjct: 124 FVLLNLPFPEDVFGLRDRAILELFYSSGIRVSELTGINEEDMDFSQGLIRIR-GKGKKER 182

Query: 234 TVELPDGFMKLLAM---TPIGKET-----------FFINNDKQKMNATQFSIWFKAKATK 279
            V +     + +        G ET            F+N  + +++A   +       + 
Sbjct: 183 IVPIGQPASEAVQRYMMKKPGSETSGKAVATCPVPLFVNRRQGRLSARSVARILSKYVSM 242

Query: 280 AGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           +G+ K  S H +R   AT   DAGA    +    G +++   + YT  +    + +
Sbjct: 243 SGLQKQISPHTLRHSFATHLMDAGADLRSIQELLGHESLSTTQKYTAVSVNRLMAV 298


>gi|222112699|ref|YP_002554963.1| integrase family protein [Acidovorax ebreus TPSY]
 gi|221732143|gb|ACM34963.1| integrase family protein [Acidovorax ebreus TPSY]
          Length = 399

 Score =  112 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 56/320 (17%), Positives = 114/320 (35%), Gaps = 26/320 (8%)

Query: 45  PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-II 103
             +++ +           + R  P T+K L +++ +         +++  +++  D+ I+
Sbjct: 75  QEWLAEVRRGGDPSAAKAAARSAP-TVKELCTKFMEDYSKQRNKPSTQRGYQAVIDRCIV 133

Query: 104 RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA--INPCLSV 161
              G    + +    + + ++   H P+ A +  + MR +F  A    +     NPC  V
Sbjct: 134 PMLGRLKVQDVKRPDVATAMKKMAHKPAEANRAFSVMRKMFNLAEVWGHRPDGTNPCRHV 193

Query: 162 ERPKRKTEGIRPWTKEDM----QQFKSFWSEGSQPR---LAFEFLLYSGLRCSDSCRAGV 214
                        + EDM    ++ +   +EG +     LA         R S+      
Sbjct: 194 PM-YPNGRATHLISDEDMGKLFRRLEHIEAEGLENYVIPLAIRLQFEFAGRRSEIVTLRW 252

Query: 215 Q--HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI----NNDKQKM-NAT 267
               L N        KTG +    + +   +LL+  P  + T ++    ++  + +    
Sbjct: 253 DWVDLDNRRVVWPDSKTGGMSK-PMSEEAYRLLSTAPRQEGTPYVLPSPSHPGKHLTTGE 311

Query: 268 QFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
            +  W +A       +   HG+R  SAT  A++G      MA    KTV     Y    D
Sbjct: 312 YYGGWSRALKAAGATHVGTHGIRHRSATDIANSGIPVKVGMALTAHKTVAMFMRYVHTED 371

Query: 328 RIRLGIKNSRRISSVVDSDD 347
                    R+ + +V +  
Sbjct: 372 ------DPVRKAAELVANRR 385


>gi|37527448|ref|NP_930792.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|37527457|ref|NP_930801.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|36786883|emb|CAE15952.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
 gi|36786892|emb|CAE15961.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 376

 Score =  112 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 57/310 (18%), Positives = 104/310 (33%), Gaps = 32/310 (10%)

Query: 59  EYINSPRKKPTTLKWLISEY---RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT 115
                P   P +L  L+  +   R+  +W    +  +     +F     + G +    IT
Sbjct: 19  RKPVGPAHDPKSLYALLLRFVVWRQERNWSESTLKVQTHHTYHFILWATERGLYYAADIT 78

Query: 116 T---KHIRSGVESRKHT------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
               +  +  +   + T        +    L  ++V FKW  +Q  +  NP   +E P+ 
Sbjct: 79  RPILERYQRYLYQYRKTNGEPLSTRTQRTQLEPLKVWFKWLTKQNLILANPAADIELPRL 138

Query: 167 KTEGIR-PWTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221
           +    R   T ++ +Q  +        G + R   E L  +G+R  +  R  V  +    
Sbjct: 139 EKHLPRYILTIDETEQILAQPDLTTLQGVRDRALMELLWSTGMRRGELTRLDVYSVDGKR 198

Query: 222 --FSIKTQKTGTIITVELPDGFMKLLAM-----------TPIGKETFFINNDKQKMNATQ 268
              +I+  K      + L +  +  L              P  K  F   +    + A  
Sbjct: 199 KTVTIRQGKGNKDRVLPLGERALSWLQRYQQQVRPQLIVNPDVKALFVAMDGLDGLQANG 258

Query: 269 FSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            S    A     G+ K    H  R   AT   + GA    + A  G  +V+  + YT+ +
Sbjct: 259 ISNLVTAYINAVGIEKKGACHLFRHAMATQMLENGADLRWIQAMLGHASVESTQVYTQVS 318

Query: 327 DRIRLGIKNS 336
            R    +  S
Sbjct: 319 IRALQAVHAS 328


>gi|281422267|ref|ZP_06253266.1| integrase/recombinase XerD [Prevotella copri DSM 18205]
 gi|281403772|gb|EFB34452.1| integrase/recombinase XerD [Prevotella copri DSM 18205]
          Length = 294

 Score =  112 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 46/272 (16%), Positives = 95/272 (34%), Gaps = 27/272 (9%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVESR---KHT 129
           EY +S    + +  +  ++        + +      F +  + +  IR+ +E      + 
Sbjct: 9   EYLRSE--LNRSQRTVENYREDLKLFEQYARNLSESFTWESVDSDMIRNWMEHMIDAGNK 66

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF--KSFWS 187
            +S  + L+++++ +++A+ + YV  +P  S++ PK      +   + +M +   +  W 
Sbjct: 67  ATSVNRRLSALKMFYRFALVRHYVESDPAHSLKGPKESKPLPQFLKENEMDELLDRKMWG 126

Query: 188 E---GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFM 242
           +     + R        +G+R S+     V  +        I T K      V   D   
Sbjct: 127 DDYDNVRARTIIILFYETGMRLSELIGLDVDDVNFIKKEIKI-TGKGNKQRIVPFGDELK 185

Query: 243 KLL--------AMTPIGKETFFINNDKQKMNATQFSIWFKA-KATKAGVNK-SAHGVRKF 292
             L            +      + +   +M+  Q     K   A    + K S H +R  
Sbjct: 186 NALSEYLTLRAQRVMVKSGALLLADKGGRMSPVQVREIVKENLARVCSLKKKSPHVLRHT 245

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324
            AT   + GA    L    G   +   E YT 
Sbjct: 246 FATAMLNHGAGIESLKRLLGHAKLSTTEIYTH 277


>gi|206558906|ref|YP_002229666.1| site-specific tyrosine recombinase XerC [Burkholderia cenocepacia
           J2315]
 gi|198034943|emb|CAR50815.1| tyrosine recombinase XerC [Burkholderia cenocepacia J2315]
          Length = 306

 Score =  112 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 46/280 (16%), Positives = 91/280 (32%), Gaps = 32/280 (11%)

Query: 75  ISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTP 130
           I+ Y  +  H   L+ ++  ++    D++ + +       +T   +R  V        + 
Sbjct: 6   IAAYLSNLKHVRQLSEHTLRAYTHELDELKKLAAGRPLDALTAADMRGAVARAHAGGLSA 65

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFW 186
            S    L++ R  ++W  ++  +  NP  +V  PKR     +  + +D    M    +  
Sbjct: 66  RSISHRLSAWRAFYRWLAQRIEMPANPVAAVRAPKRPKTLPKALSVDDASALMDAPLAGT 125

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRA-------------GVQHLQNNIFSIKTQKTGTII 233
           +EG +     E    SGLR ++                 G   L     +++  K     
Sbjct: 126 TEGIRDHAILELFYSSGLRLAELIGLDVTYTQADGYRSAGWLDLAEAEVTVR-GKGNKER 184

Query: 234 TVELPDGFMKLLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284
            V +    +  L                  F++    +M+        K  A  AG+   
Sbjct: 185 KVPVGRKAIDALNAWLAVRGEFVKHDPHPLFVSVRGNRMSPGVVRERVKRAALAAGIPAN 244

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
              H +R   AT    +      +    G  +V   + YT
Sbjct: 245 VHPHVLRHSFATHVLQSSGDLRAVQELLGHASVAATQVYT 284


>gi|300741219|ref|ZP_07071240.1| tyrosine recombinase XerD [Rothia dentocariosa M567]
 gi|300380404|gb|EFJ76966.1| tyrosine recombinase XerD [Rothia dentocariosa M567]
          Length = 320

 Score =  112 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 43/237 (18%), Positives = 77/237 (32%), Gaps = 31/237 (13%)

Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
            R         P+S  + + ++R    +      +  +P  +V+ PK      +  + E 
Sbjct: 63  TRDVTLPLPLGPNSIARTMAAVRGAHSFWHASRILETDPAAAVKPPKNVKRLPKAVSVEQ 122

Query: 179 MQQFKS----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---------NNIFSIK 225
           MQ+  +        G + R   EFL  +G R S+     +  +              ++ 
Sbjct: 123 MQKLLAIPSLKTPTGLRNRAILEFLYATGARVSEMLATDLDDIHLGEKPRDENGEFIAVP 182

Query: 226 T-----QKTGTIITVELPDGFMKLL-----AMTPI------GKETFFINNDKQKMNATQF 269
                  K G    V L     + L        P       G    F+N    ++     
Sbjct: 183 GYVRLFGKGGKERLVPLGSYAQRALEDYIVRARPKFASHGKGTAALFLNGRGSRLGRQGA 242

Query: 270 SIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            +  K  A +AG+  + S H +R   AT     GA    +    G  ++   + YTK
Sbjct: 243 WLILKETAEEAGLSSDFSPHSIRHSFATHLVQGGADIRVVQELLGHASIATTQVYTK 299


>gi|296283728|ref|ZP_06861726.1| integrase [Citromicrobium bathyomarinum JL354]
          Length = 304

 Score =  112 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 43/268 (16%), Positives = 89/268 (33%), Gaps = 16/268 (5%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLF 144
              A N+  ++    +  +   G  +     T   R G       P++  +  +++R  F
Sbjct: 17  RGAAANTLAAYRRDLEGAVGIVGPLE-DATRTDLARLGAAWADLAPATVARKASALRQFF 75

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW--------SEGSQPRLAF 196
            +   +   + NP  ++  P ++    +      ++   +              +     
Sbjct: 76  GFLEDEGLRSDNPSAALPSPTKRRSLPKILDHAQVEALFAQAEREAEEGDPAALRLLAMI 135

Query: 197 EFLLYSGLRCSDSCRAGVQHL-QNNIFSIKTQKTGTIITVELPDGFMKLLA---MTPIGK 252
           E L  SGLR S+     +  + ++  F   T K G    V L      +L+         
Sbjct: 136 ELLYGSGLRASELVTLPLSAVPRDAPFLTITGKGGKERLVPLGTRARAVLSRWLAVRPEG 195

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMA 309
             +   +  + +   +     KA A ++G++    S H +R   AT   + GA    L  
Sbjct: 196 SPWLFPSRGKHLTRIRLYQLLKALAERSGIDPAKISPHVLRHAFATHLLEGGADLRALQT 255

Query: 310 TYGWKTVDQAETYTKGADRIRLGIKNSR 337
             G   +   + YT       + + N R
Sbjct: 256 LLGHADIATTQIYTHVESARLVALVNER 283


>gi|167461250|ref|ZP_02326339.1| phage integrase family protein [Paenibacillus larvae subsp. larvae
           BRL-230010]
 gi|322382057|ref|ZP_08055993.1| site-specific tyrosine recombinase XerC-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321153972|gb|EFX46316.1| site-specific tyrosine recombinase XerC-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 301

 Score =  112 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 46/293 (15%), Positives = 93/293 (31%), Gaps = 33/293 (11%)

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT-- 115
           R+      K   T++  I           L   +   + S     I      D+++    
Sbjct: 2   RKATGISEKGDQTIQDFIHALTTH---EDLNPKTLKEYASDLKHFIGWFETADHQEEEVL 58

Query: 116 -----------TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP 164
                      T++  +  +  K  P++  + L +++  F+WAV       NP   V+  
Sbjct: 59  FRIEDVATPTLTRYRETAQKVMKLKPATINRRLITLKRFFEWAVS----ESNPSKPVKLV 114

Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEG--SQPRLAFEFLLYSGLRCSDSCRAGVQHL----Q 218
             +    R  T ++     +    G   + +     + ++GLR  + C      +    +
Sbjct: 115 PEEKISPRQMTDKEEAALIAASEHGGSLRDQTILILMFHTGLRTMEVCDLAPGDIQIGKR 174

Query: 219 NNIFSIKTQKTGTIITVELP----DGFMKLLAMTPIGKETFFIN-NDKQKMNATQFSIWF 273
               ++++ K      V L         K LA+ P      F +     ++         
Sbjct: 175 RGQLTVRSGKRNKQREVPLNATCRAALEKYLAVHPSDSPYLFPSEKTGDRLTERALRHLI 234

Query: 274 KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           +     A +   SAH +R     + A+     H L    G  ++D    Y K 
Sbjct: 235 QKYMKSARLKGLSAHDLRHRFGYVMAEN-TPLHRLAQIMGHDSLDTTMIYVKA 286


>gi|116254508|ref|YP_770344.1| putative phage integrase protein [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115259156|emb|CAK10271.1| putative phage integrase protein [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 303

 Score =  112 bits (281), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 43/268 (16%), Positives = 94/268 (35%), Gaps = 23/268 (8%)

Query: 74  LISEYRKSAHWGSLAVNSRISFE---SYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
           L     +     + ++N+++++    S F +   KS D   R+    +       +K  P
Sbjct: 15  LRQRMSEDMQVRNFSLNTQLAYLQQVSLFARYFSKSPDLLGREDVRIYQVYLANEKKLAP 74

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           SS    ++++R L+K  + +++V   P   +  PK+  +     + +++Q F     +  
Sbjct: 75  SSIHTAISALRFLYKVTLERDWV---PEEVLPLPKKPQKLPIILSPDEVQHFLGCVLDPK 131

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLA-- 246
                      +GLR S++ +     + +    ++    K      V L    +++L   
Sbjct: 132 H-HAILTTCYAAGLRISEAVQLKPTDIDSQRMVVRVEQGKGQKDRYVMLSPKLLEILRDY 190

Query: 247 -MTPIGKETFFINND-KQKMNATQFSIWFKAKATKA------GVNKSAHGVRKFSATISA 298
                 K   F  +   Q +              KA          + H +R   A    
Sbjct: 191 WKMRRPKAWLFPGDRAGQPITRDAVG----EACAKAHNLSRLSKPVTPHSLRHAFAVHLL 246

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGA 326
           +AGA    +    G +++     Y + A
Sbjct: 247 EAGADVRTIQLLLGHRSLATTAHYLRIA 274


>gi|56419747|ref|YP_147065.1| site-specific tyrosine recombinase XerC [Geobacillus kaustophilus
           HTA426]
 gi|56379589|dbj|BAD75497.1| integrase/recombinase [Geobacillus kaustophilus HTA426]
          Length = 289

 Score =  112 bits (281), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 41/272 (15%), Positives = 84/272 (30%), Gaps = 26/272 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE------SRKHTPSSAIQFLT 138
            + +  + + +    +Q  R   +     +                 ++    S  + ++
Sbjct: 8   KNYSQYTIVCYRRDIEQFFRFMDEEGIGALNEVSYSDVRLYLTKLYEQQLASRSVARKIS 67

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK----SFWSEGSQPRL 194
           S+R  +K+ +R+   A NP      PK++ +       ++++          + G +   
Sbjct: 68  SLRSFYKFLLREGRAAENPFALATLPKKEQKIPNFLYPKELEALFLVNDENTALGQRNAA 127

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVE------------LPDGF 241
             E L  +G R S+ C   +  +       +   K      V             +  G 
Sbjct: 128 LLELLYATGARVSECCHIQLSDVDFVAETVLIHGKGNKQRYVPFGRPAREALERYIHRGR 187

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISAD 299
            +L    P      F+N     +               A +  N S H +R   AT   +
Sbjct: 188 RELTRKLPADHRYLFVNARGNPLTPRGVRHILDRIVEAAALTQNISPHVLRHTFATHLLN 247

Query: 300 AGATAHELMATYGWKTVDQAETYTK-GADRIR 330
            GA    +    G   +   + YT    DR+R
Sbjct: 248 EGADLRSVQELLGHAHLSSTQVYTHVTKDRLR 279


>gi|242279145|ref|YP_002991274.1| integrase family protein [Desulfovibrio salexigens DSM 2638]
 gi|242122039|gb|ACS79735.1| integrase family protein [Desulfovibrio salexigens DSM 2638]
          Length = 307

 Score =  112 bits (281), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 49/287 (17%), Positives = 100/287 (34%), Gaps = 33/287 (11%)

Query: 85  GSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKH--TPSSAIQFLTSM 140
            SL+  +  ++     Q        + +   I  + IR+ + +  H   P +  + L ++
Sbjct: 18  RSLSSLTLQAYRKDLSQFGETIDLNNVEVINIDKESIRTYLSNINHNYKPKTLKRKLATL 77

Query: 141 RVLFKWAVRQEYVAINP----------CLSVERPKRKTEGIRPWTKE--DMQQFK---SF 185
           +  F +  R++ +  +P             + +  ++T   R       + ++F      
Sbjct: 78  KSFFNFLEREDLIPFSPFRKLHIKIDRSKELPKIIKETSLSRILKYAYLEKEKFDHKSKA 137

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGTIITVEL------- 237
           + E ++     E L  +G+R S+ C      +   N   I   K      + L       
Sbjct: 138 YREITRDICVIELLFATGIRVSELCSISPSEIDLKNKKLIINGKGNKQRLIPLCENNSLK 197

Query: 238 -PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSA 294
               +  L         +FF+N D + ++        K  +  AGV ++   H  R   A
Sbjct: 198 ILKEYSLLYQYALHDSTSFFLNRDLKPLSDQSVRRIIKKYSEIAGVTETITPHMFRHTIA 257

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK---GADRIRLGIKNSRR 338
           T+  + G     +    G  ++   E YT     + R  L  K+ RR
Sbjct: 258 TMLLENGVDIRNIQTLLGHSSLSVTEIYTHVSLSSQRDILAKKHPRR 304


>gi|283768283|ref|ZP_06341195.1| phage integrase, N-terminal SAM domain protein [Bulleidia extructa
           W1219]
 gi|283104675|gb|EFC06047.1| phage integrase, N-terminal SAM domain protein [Bulleidia extructa
           W1219]
          Length = 297

 Score =  112 bits (281), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 46/280 (16%), Positives = 94/280 (33%), Gaps = 29/280 (10%)

Query: 77  EYRKSA----HWGSLAVN----SRISFESYFDQIIRKSGDFDY-------RKITTKHIRS 121
           +Y+KS      +  LA      +  ++    +  I               +    ++  +
Sbjct: 2   DYKKSLKSFLDYIRLARTGSLHTEKAYRRDVENFIAYLEKKKIHTWKRVDKNFLLEYFTT 61

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM-- 179
             +    + SS  + L+S+R  F++    E +  NP  S +  K         T + +  
Sbjct: 62  LRQKNHLSNSSYDRHLSSLRSFFRYLNVVEGIGHNPMSSFKNVKTSRPLPEYLTVDQVQD 121

Query: 180 --QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-- 235
               F     +G + R   E L   GLR S+     +Q +    + ++     +   +  
Sbjct: 122 LLDSFDLEDKKGLRNRCIVELLYACGLRISECANIKIQDIHFRDYYVRVMGKESKERIVP 181

Query: 236 ---ELPDGFMKLLAMTPIGK---ETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAH 287
              EL D   K L          + FF  +  + ++     +  + K  +  +      H
Sbjct: 182 FYKELGDLLTKYLKKYGSFSQLSDPFFKGSKGKAISVRSIQLLLEKKGRELKLPFQLHPH 241

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
            +R   AT   D GA    + +  G + +   + YT  + 
Sbjct: 242 VLRHSFATHLLDNGADLRIVQSLLGHENLSTTQIYTHVSQ 281


>gi|312143561|ref|YP_003995007.1| integrase family protein [Halanaerobium sp. 'sapolanicus']
 gi|311904212|gb|ADQ14653.1| integrase family protein [Halanaerobium sp. 'sapolanicus']
          Length = 311

 Score =  112 bits (281), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 38/263 (14%), Positives = 88/263 (33%), Gaps = 28/263 (10%)

Query: 89  VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES----RKHTPSSAIQFLTSMRVLF 144
            N       Y  + +    +F    +    I   +        +   +  + L ++R  +
Sbjct: 34  ENDLQQLYRYLKEELDFPEEFKPEDVDRLDIAEFLADAVIVNDNKAITRNRKLFAIRSFY 93

Query: 145 KWAVRQEYVAINPCLSVERPKRKTE-GIRPWTKEDMQQFKSFWSE-----GSQPRLAFEF 198
           K+ +R   +  NP  +++  K  T+        ++ Q+F +   +       +     + 
Sbjct: 94  KYLLRYGVIEKNPAEAIDSSKTDTKLEPIYLKLKEAQKFIAAIDDKDNINRLRDIAITKL 153

Query: 199 LLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF- 255
            LY+GLR S+       ++   +        K      V L +   + L      + T  
Sbjct: 154 FLYAGLRISELVNLDFDNVDFEDGSIKFY-GKGSKERYVPLHNDVTEALKRYLKERNTIK 212

Query: 256 ----------FINNDKQKMNATQFSIWFKAKATKAGVNK----SAHGVRKFSATISADAG 301
                     F++   ++++     ++ K  A KAG+++    + H +R   A++     
Sbjct: 213 IKDQDARQAIFLSRHGRRISPRTIQLFVKKYAKKAGLSRADKITPHKLRHTFASMLYRQT 272

Query: 302 ATAHELMATYGWKTVDQAETYTK 324
                L    G   +   + YT 
Sbjct: 273 KDIKVLQDLLGHANISTTQIYTH 295


>gi|298528009|ref|ZP_07015413.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298511661|gb|EFI35563.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
          Length = 390

 Score =  112 bits (281), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 51/326 (15%), Positives = 106/326 (32%), Gaps = 22/326 (6%)

Query: 19  GKIIYYFR----KGHGRRIRLPYPHESTFIPAYMSALTGSTPK-----REYINSPRKKPT 69
           GK  YY R     G  ++++L  P   +   A   A    +        +      K   
Sbjct: 41  GKATYYLRYRDNTGQLKQVKLGTPETLSLDEARTRARATKSQTLIGFDPKAEQEKIKAIP 100

Query: 70  TLKWLI-SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-- 126
           T K  +   Y    +  +   +          +++R  G      I T  +     +   
Sbjct: 101 TFKDFVYDSYL--PYAKTYKKSWEQDQTMIEQRMLRVWGRRKLNSINTHDLIEFQNNLVK 158

Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
                 S  +++  ++ +F  A R E +   P  +  + +      R   +E++ +    
Sbjct: 159 GGLKAGSVNRYMALVKYIFNLAERWEIIDKAPTRNARKLEDNGARERYLNQEEVYRLLEA 218

Query: 186 WSEGSQPRLA--FEFLLYSGLRCSDSCRAGVQHLQNNIFSI----KTQKTGTIITVELPD 239
            +      +    EFLL +G R +++     Q +           +  K G   TV L +
Sbjct: 219 LNSCKSQVVPDLIEFLLLTGARKTEAAELTWQEVDMERGIWELPAQRNKAGKPKTVPLSE 278

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISA 298
             +K+L         +   N +       F   +     +AG+     H +R   A+   
Sbjct: 279 AAIKVLKRRADNGSRWVFPNPETGKPLRHFHNTWDRIRKQAGIPSARLHDLRHSFASFLV 338

Query: 299 DAGATAHELMATYGWKTVDQAETYTK 324
           ++G + +E+    G   +   + Y  
Sbjct: 339 NSGRSLYEVQKLLGHSQLSTTQRYAH 364


>gi|307149687|ref|YP_003890995.1| integrase family protein [Cyanothece sp. PCC 7822]
 gi|306986753|gb|ADN18630.1| integrase family protein [Cyanothece sp. PCC 7822]
          Length = 286

 Score =  112 bits (281), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 46/252 (18%), Positives = 86/252 (34%), Gaps = 14/252 (5%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRV 142
              + +SR S+       +         +IT   I     +      P+S  + L +++ 
Sbjct: 20  HGKSPDSRRSYMRDIQDFLE-FTHKPIEQITIADIIDWDSALALRYAPTSRKRKLAAIKS 78

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTE-GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201
           LF +A + E ++ NP  +V  PK K     R  T+++ ++            L    L  
Sbjct: 79  LFSFAHKNELISTNPGAAVPSPKTKDAISERILTEDEWERMLYAEPNRQHQ-LMLTLLYE 137

Query: 202 SGLRCSDSCRAGVQHLQ---NNIFSIKTQKTGTIIT-VELPDGFMKLLAMTPI----GKE 253
           +  R S+ C    + ++   +    +     G     V +     ++L  T      G  
Sbjct: 138 TRARVSEFCALKWKDIREKPDGAALVTLFGKGNKTRKVTITPQLWQVLKATKAADAKGDS 197

Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYG 312
             F+N   +  +  Q     KA   + G+   S H +R   AT     G+  H      G
Sbjct: 198 PLFLNYRHKAYSTVQVWRIVKAAGERVGIYGVSPHWIRHTGATHQLINGSPLHLQQQELG 257

Query: 313 WKTVDQAETYTK 324
              ++    Y  
Sbjct: 258 HSGLNTTSKYLH 269


>gi|322417793|ref|YP_004197016.1| integrase family protein [Geobacter sp. M18]
 gi|320124180|gb|ADW11740.1| integrase family protein [Geobacter sp. M18]
          Length = 402

 Score =  112 bits (281), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 44/239 (18%), Positives = 87/239 (36%), Gaps = 17/239 (7%)

Query: 106 SGDFDYRKITTKHIRSG--VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163
            G      IT++ +      E  + + ++A   L++++ +   AV+ E +  NP  S E+
Sbjct: 146 FGKQRLSGITSRDVALLCSKEKARTSATTANHLLSTLKRMLNLAVKWELLEKNPASSQEK 205

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHL--QN 219
            K   +  R  +K+++ +F S   E        A   LL++G R  +        +    
Sbjct: 206 FKEPPQRERYLSKDELPRFLSALDEEDDGLSVAAIRMLLFTGCRRGEVLSLKWNEVRLDE 265

Query: 220 NIFSIKTQKTGTIITVELPDGFMKLLAMTP---------IGKETFFINNDKQKMN-ATQF 269
           +   +   K G    V L      ++                E  F +    K       
Sbjct: 266 DCILLLDTKNGRSRMVHLNARAKAVVEELHENRDKEVRTAASEYVFPSRQGTKKGHLFDL 325

Query: 270 SIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
              F+    +AGV N   H +R   A+++   GA+  ++    G + +   + Y   +D
Sbjct: 326 RKPFEKACQRAGVENFRIHDLRHTFASMAVRGGASLFDVQKLLGHQDIAMTQRYAHLSD 384


>gi|84517230|ref|ZP_01004585.1| Phage integrase [Loktanella vestfoldensis SKA53]
 gi|84508905|gb|EAQ05367.1| Phage integrase [Loktanella vestfoldensis SKA53]
          Length = 445

 Score =  112 bits (281), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 63/354 (17%), Positives = 115/354 (32%), Gaps = 26/354 (7%)

Query: 6   RLPPFVTKERTRHGKIIYYFR----KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYI 61
           R    +  E    G + YY R    +   R I+L    + T   A              I
Sbjct: 28  RRVKGLVLEVRTSGGMTYYMRYTDDRSKTRYIKLANVGDITLPQARGLCRQHRNKLALGI 87

Query: 62  NSPRKKPT-----TLKWLI-SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT 115
           +   ++       T    +   Y   A     +  +  +       +  + G     +IT
Sbjct: 88  DPLAERAVKRLVPTFGDFVRERYLPFAQANKRSWKTDETLART--HLTPQLGTMHMDEIT 145

Query: 116 TKHIRSGVE---SRKHTPSSAIQFLTSMRVLFKWAVRQEY----VAINPCLSVERPKRKT 168
            + + S  +        P+S  + L  +R +F  A  +++    V  NP   V   K   
Sbjct: 146 IEDVLSLQQIGLKAGAAPASINRRLILLRYMFNLAW-RDWKIAGVTGNPTHGVRLLKENN 204

Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQN--NIFSI 224
           +  R    E++        E     L     FLL +G R ++   A  + +     ++ I
Sbjct: 205 QKERYVRAEELALLYRAVKESQNKMLQHIVAFLLLTGTRRNEVLHATWEDVDLIKGMWRI 264

Query: 225 KTQKTGTIITVELPDGFMKLLA-MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV- 282
              K+G    V L DG   +L  M    +  +   N K           + +   KAG+ 
Sbjct: 265 PQTKSGFARHVPLNDGAYAVLQQMQGRSQSHYIFGNPKTGKPYVHVWYAWNSARVKAGLP 324

Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
           +   H +R   A++  + G + +E+    G   +   + Y        L   N 
Sbjct: 325 DVRLHDLRHTFASLLINNGRSIYEVQKLLGHTQIKTTQRYAHLTQETLLDASNI 378


>gi|316985480|gb|EFV64427.1| tyrosine recombinase XerC [Neisseria meningitidis H44/76]
          Length = 329

 Score =  112 bits (281), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 38/274 (13%), Positives = 84/274 (30%), Gaps = 20/274 (7%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD---YRKITTKHIRSGVES-- 125
           L   +  Y ++      + ++  ++     +++    +         T       +    
Sbjct: 34  LAAYLDAYLENIVREGKSEHTVAAYRRDLQELLALLEEMPSANPSNCTRGDFVQALRRLS 93

Query: 126 -RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
            R     +  + L+S R    W V++  +  +P   ++ PK+     +   +E + +   
Sbjct: 94  GRGLGERTLARKLSSWRQYCVWLVKRGLMHADPTADIKPPKQPERVPKALPQEWLNRMLD 153

Query: 185 F-----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELP 238
                      +    FE +  SGLR S+        +  +   +     G     V L 
Sbjct: 154 LPVDGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVIGKGRKQRQVPLV 213

Query: 239 ----DGFMKLL--AMTPIGKETFFINNDKQKMNATQFSIWFKAKATK--AGVNKSAHGVR 290
               +     L    T    +  F   +  +++  Q        A +   G + S H +R
Sbjct: 214 GKSVEALKNYLPLRQTASDGKALFTGRNGTRLSQRQIQKRLAQWAAQNGDGRHVSPHMMR 273

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              A     A      +    G  ++   + YTK
Sbjct: 274 HSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTK 307


>gi|220925261|ref|YP_002500563.1| integrase family protein [Methylobacterium nodulans ORS 2060]
 gi|219949868|gb|ACL60260.1| integrase family protein [Methylobacterium nodulans ORS 2060]
          Length = 588

 Score =  112 bits (281), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 68/355 (19%), Positives = 117/355 (32%), Gaps = 75/355 (21%)

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG-DFDYR 112
            T +R + +SP++   TL  LISE+ K    G+    +   +   F  +    G D + +
Sbjct: 225 DTARRSHDSSPKR---TLNALISEFEKDPGRGARTGKTNTDYRMVFTAMREIIGPDTEVQ 281

Query: 113 KITTKHIRSGVESRKHTPSSA-----------------------------IQFLTSMRVL 143
            I+ +H +   +     P +A                                LT M  +
Sbjct: 282 SISREHTKRVRDLFLALPPNATKRFPGMTLLQAGELAQRNRLATLNIQTINSHLTKMSTM 341

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW--------------SEG 189
           F WA+++E++  NP   +   + +     P+  E ++   S                  G
Sbjct: 342 FNWAIKEEWIGRNPASGLAIDEVQKNKREPFDLEQLRAIFSAPIYAGCQDDEAGYAKPGG 401

Query: 190 SQPRLAF----EFLLYSGLRCSDSCRAGVQHLQNN----IFSIKT--------QKTGTII 233
           S PR A        L+ GLR +++C+  V+ L       +  ++          K GT I
Sbjct: 402 SHPRRARFWVPLLSLFHGLRLNEACQLRVEDLAERNGITVLHVRAADADQRIKSKAGTRI 461

Query: 234 TVELPDG-----FMKLLAMTPIGKETFF---INNDKQKMNATQFSIWFKAK---ATKAGV 282
            V L        F+  +   P+  +      +  D +   +  F  WF         A  
Sbjct: 462 -VPLHPEVIKIGFVDYVRDLPVEGDGRIFPELQKDTRGYYSDAFQKWFSRFLHSCGAAKT 520

Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
               H  R   A    +AG       A  GW +      Y KG     L    ++
Sbjct: 521 GTKFHSFRHGWADRLREAGVPEDRRRALGGWASTGADAGYGKGFPTRILAEDIAK 575


>gi|259507532|ref|ZP_05750432.1| tyrosine recombinase XerC [Corynebacterium efficiens YS-314]
 gi|259164917|gb|EEW49471.1| tyrosine recombinase XerC [Corynebacterium efficiens YS-314]
          Length = 296

 Score =  112 bits (281), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 37/265 (13%), Positives = 92/265 (34%), Gaps = 19/265 (7%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRV 142
             +  +   + S    +     D    + T  ++R+ +        + ++  +   S++ 
Sbjct: 26  GRSDATVRGYRSDLRHMAATIPD--LTEFTLPNLRAWLGRAVEEGKSRATLARRTASVKS 83

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS-----QPRLAFE 197
              WAV+   ++ +    +  PK      R   +    +F    +  +     +     E
Sbjct: 84  FSTWAVKNGLISGDEAARLVSPKVTRNLPRVLGEVQAGEFMGSAAADTEDEFRRDSAILE 143

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVEL-------PDGFMKLLAMTP 249
            L  +G+R S+ C   +  + ++   ++   K      +          + +++      
Sbjct: 144 LLYATGMRVSELCGLDLGDVDHHRRMVRVLGKGDKERMIPFGKAAADALEQWLEARDRMA 203

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELM 308
             ++  F+     +++A Q        A  AG +  S H +R  +AT   D GA   ++ 
Sbjct: 204 KVEDAMFVGVRGGRIDARQIRRIVDRTAQVAGADHLSPHSLRHTAATHLLDGGADLRQVQ 263

Query: 309 ATYGWKTVDQAETYTKGADRIRLGI 333
              G  ++   + YT  + +  L  
Sbjct: 264 EMLGHSSLQTTQIYTHVSSQRLLEA 288


>gi|229075069|ref|ZP_04208071.1| DNA integration/recombination/invertion protein [Bacillus cereus
           Rock4-18]
 gi|228708126|gb|EEL60297.1| DNA integration/recombination/invertion protein [Bacillus cereus
           Rock4-18]
          Length = 369

 Score =  112 bits (281), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 48/312 (15%), Positives = 107/312 (34%), Gaps = 38/312 (12%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE 124
               TLK  ++ + +     S+  ++ + + ++ +  +I   G     K+   HI+   +
Sbjct: 60  PSKVTLKEYLNHWLEIKS-MSIERSTFVGYRAFINQHVIPSIGMVALHKLNVMHIQKCYK 118

Query: 125 SRKHTPSSAIQFLTSMRVL---FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
           +      +    L + R+L      AV+Q  ++ NP    E PK++   I+ WT+E++++
Sbjct: 119 TAMDKGIANNSILLTHRILKSALNLAVKQNIISQNPAAFAEIPKKERTSIQTWTEEEVKK 178

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--------------NNIFSIKTQ 227
           F    S+ S+  + +   + +G+R  +      Q +               +N      +
Sbjct: 179 FL-LHSQESRYHIGYLLAITTGMRMGEVLGLRWQDVDFEKHTVTINQTSGHDNKIKKTAK 237

Query: 228 KTGTIITVELPDGFMKLLAMTPI--------------GKETFFINNDKQKMNATQFSIWF 273
              +  T+ +P   ++ L    I                +    N     +    F   F
Sbjct: 238 TNSSKRTIPVPRETIESLKRHKITINKEKLRFGSAYQDFDLINCNEFGMIIKKANFRKNF 297

Query: 274 KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADRIRL 331
                 AG+ +   H +R   ATI    G     +    G   +      Y+       +
Sbjct: 298 IRATHNAGIKEIKFHDLRHTHATILLKQGVNPKIISERLGHTDISLTLSVYSHVL--PNM 355

Query: 332 GIKNSRRISSVV 343
             +  +     +
Sbjct: 356 QEEAVKNFGKSI 367


>gi|296163709|ref|ZP_06846425.1| integrase family protein [Burkholderia sp. Ch1-1]
 gi|295886049|gb|EFG65951.1| integrase family protein [Burkholderia sp. Ch1-1]
          Length = 321

 Score =  112 bits (281), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 45/302 (14%), Positives = 96/302 (31%), Gaps = 37/302 (12%)

Query: 43  FIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI 102
           F+  Y+  L  +    + + S            +E R  +    L  +   +++ Y    
Sbjct: 3   FVKGYLDWLAVTGRTEQTVRSRLVALERFVRWCAE-RSLSRPQELTRSVLEAYQRYLYLY 61

Query: 103 IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162
            ++ G                  +  T  +    LT +R   +W  R+ +V  N    + 
Sbjct: 62  RKQDG------------------KPLTIRTQQTMLTPLRGWCRWLSRERHVQYNAAAELV 103

Query: 163 RPKRKTEGIRP-WTKEDMQQFKSFWSEG----SQPRLAFEFLLYSGLRCSDSCRAGVQHL 217
            P+      +   +   +++       G    ++ R   E L  +G+R  +     +  +
Sbjct: 104 LPRAPKLLPKVVLSVVQVERLMDQPDVGGLTGARDRAILEVLYSTGMRRMELIGLTISDI 163

Query: 218 Q--NNIFSIKTQKTGTIITVELPDGFMKLL----------AMTPIGKETFFINNDKQKMN 265
                   I+  K      + L +     +                + T F+ +  +   
Sbjct: 164 DLSGGTVMIRQGKGRRDRYIPLGERACYWVEWYCDRIRPSHAVRADEWTLFLTDYGEPFG 223

Query: 266 ATQFSIWFKAKATKAGVNKSA-HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             + S   K    +AG+ + A H +R   AT   + GA    + A  G   +   + YT+
Sbjct: 224 KGRLSDLVKRYMERAGIREGACHVLRHACATHMLENGADIRFIQALLGHADLSSTQIYTQ 283

Query: 325 GA 326
            A
Sbjct: 284 VA 285


>gi|307300528|ref|ZP_07580308.1| tyrosine recombinase XerD [Sinorhizobium meliloti BL225C]
 gi|306904694|gb|EFN35278.1| tyrosine recombinase XerD [Sinorhizobium meliloti BL225C]
          Length = 311

 Score =  112 bits (281), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 47/282 (16%), Positives = 97/282 (34%), Gaps = 29/282 (10%)

Query: 72  KWLISEYRKS-AHWGSLAVNSRISFESYFDQII-----RKSGDFDYRKITTKHIRSGVES 125
              +  + +  +     A N+  S+E   +        R +G  D      +   S +  
Sbjct: 6   AAYVEAFLEMMSAERGAAANTLQSYERDLEDARSFLRSRGTGLTDASADDLRSYLSHLAG 65

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF--- 182
           +    SS  + L+++R  +K+   +     +P   ++ PK+     +  + ED+ +    
Sbjct: 66  QGFKASSQARRLSALRQFYKFLYAEGLRTDDPTGILDAPKKARTLPKTLSIEDVTRLIGQ 125

Query: 183 -KSFWSEGS-------QPRLAFEFLLYSGLRCSDSCRAGVQHL-QNNIFSIKTQKTGTII 233
            ++    GS       +     E L  +G+R S+        L QN  F I   K     
Sbjct: 126 AEAEAKSGSDDVMAKLRMHALIELLYATGMRVSELVSLPASVLAQNGRFLIIRGKGNKER 185

Query: 234 TVELPDGFMKLLAMTP------IGKETFFINNDKQ--KMNATQFSIWFKAKATKAGVNKS 285
            V L    ++ +               +   ++ +   +    F+   K+ A +AG+  +
Sbjct: 186 LVPLSQAAIRAMRAYGEALQEESADSPWLFPSNGKSGHLPRQVFARDLKSLAARAGIRVA 245

Query: 286 A---HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           A   H +R   A+     GA    +    G   +   + YT 
Sbjct: 246 AIWPHVLRHAFASHLLANGADLRAVQELLGHSDISTTQIYTH 287


>gi|85373646|ref|YP_457708.1| site-specific recombinase, phage integrase family protein
           [Erythrobacter litoralis HTCC2594]
 gi|84786729|gb|ABC62911.1| site-specific recombinase, phage integrase family protein
           [Erythrobacter litoralis HTCC2594]
          Length = 398

 Score =  112 bits (280), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 58/341 (17%), Positives = 115/341 (33%), Gaps = 37/341 (10%)

Query: 17  RH---GKIIYYFRKGHGRRIRLPYPHESTFIPAYMS--------ALTGSTPKREYINSPR 65
           RH   G+ +Y  +     R+R      ++ +  Y +        A               
Sbjct: 46  RHYPSGRNVYIVQTRMAGRMRTVTIGPTSVLTRYQAQMVARRVIAYAQVGRDPATERQRI 105

Query: 66  KKPTTLKWLISEY--RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
           +   +    ++EY  R +  W +  + +   +      +          ++   H+ S  
Sbjct: 106 RSAPSFADFVTEYWDRWAPRWKASTLETHTGYRR--RYLDDAFVGVYIDELNEGHVTSWF 163

Query: 124 ESRKH--TPSSAIQFLTSMRVLFKWAVRQEYV--AINPCLSVERPKRKTEGIRPWTKEDM 179
               +   P ++ +    ++ +   A    Y     NPC SV RP RK +  R  T +++
Sbjct: 164 ADLNNLTGPGASNRTFEILKHMLNKAEDWGYRLENTNPCRSV-RPNRKRQCERFLTNDEL 222

Query: 180 QQFKSFWS--EGSQPR------LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
            +  +  +    S+ R       A   LL +G R S+        ++ N   ++  KTG 
Sbjct: 223 ARLGAELTNLRASEDRTKQCSGAAITLLLLTGCRKSEILTLEWTDIKGNRLHLRDSKTG- 281

Query: 232 IITVELPDGFMKLLAMTPIGKE---TFFINNDKQK-MNATQFSIWFKAKATKAGV-NKSA 286
             TV L     +++A  P  +     F+    ++       F    +    +AG+ +   
Sbjct: 282 PRTVWLGSAAREVIAALPRFERIPYPFWNYRYRKPLRCVNGFWRRLRD---EAGLPDVRI 338

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           H +R   A+ +A    T   +    G   V     Y    D
Sbjct: 339 HDLRHTFASHAAMNKETLPMIGRLLGHANVQTTARYAHFDD 379


>gi|26991906|ref|NP_747331.1| site-specific tyrosine recombinase XerC [Pseudomonas putida KT2440]
 gi|34222832|sp|Q88CF1|XERC_PSEPK RecName: Full=Tyrosine recombinase xerC
 gi|24987029|gb|AAN70795.1|AE016723_7 integrase/recombinase XerC [Pseudomonas putida KT2440]
          Length = 299

 Score =  112 bits (280), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 35/259 (13%), Positives = 86/259 (33%), Gaps = 19/259 (7%)

Query: 85  GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLT 138
             ++ ++   +    +++     + G  D++ +  + +R  +        +P S  + L+
Sbjct: 16  RQVSEHTSQGYRRDLEKVIAYCEEHGIADWQALQIQQLRQLIARLHHHGQSPRSLARLLS 75

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW-TKEDMQQFKSFWS---EGSQPRL 194
           ++R L+++  R+     +P   +  PK +    +   T   +Q             + + 
Sbjct: 76  AVRGLYRYLNREGLCQHDPANGLSAPKGERRLPKVLDTDRALQLLDGGVDDDFIARRDQA 135

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPI--- 250
             E    SGLR S+     + HL      ++   K G    + +     + L        
Sbjct: 136 ILELFYSSGLRLSELTNLDLDHLDLAAGLVQVLGKGGKARVLPVGRKAREALQAWYRLRG 195

Query: 251 ----GKETFFINNDKQKMNATQFSIWFKAK-ATKAGVNKSAHGVRKFSATISADAGATAH 305
                    FI     +++     +  K     + G +   H +R   A+   ++     
Sbjct: 196 IGNPRDRAVFITRQGNRISPRAVRLRVKVAGERELGQHLHPHMLRHSFASHVLESSQDLR 255

Query: 306 ELMATYGWKTVDQAETYTK 324
            +    G   +   + YT 
Sbjct: 256 AVQEMLGHADISTTQIYTH 274


>gi|308051404|ref|YP_003914970.1| tyrosine recombinase XerC [Ferrimonas balearica DSM 9799]
 gi|307633594|gb|ADN77896.1| tyrosine recombinase XerC [Ferrimonas balearica DSM 9799]
          Length = 296

 Score =  112 bits (280), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 38/261 (14%), Positives = 93/261 (35%), Gaps = 21/261 (8%)

Query: 85  GSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLT 138
              +  +  ++    ++   +++  G  D++ + T+H ++ +     +  +P S    L+
Sbjct: 16  RQYSAYTVRNYLKELERALPLLQAQGLTDWQGLRTQHCQALLAKLHRQGLSPRSLSLTLS 75

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS---QPRLA 195
           ++R L K+ +R+  +  +P + V+ PK+     +    + + +      +     + R  
Sbjct: 76  ALRQLIKFLLREGTLTHDPMVGVQAPKQGRPLPKNLDVDQVNRLLELNDDDPLVIRDRAM 135

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVEL----PDGFMKLLAMTPI 250
            E    SGLR ++        L      ++   K G    + +     +   K LA+ P 
Sbjct: 136 MELFYSSGLRLAELVALDCPQLSLTDREVRVMGKGGKERILPVGNKASEWLAKYLALRPA 195

Query: 251 -----GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGAT 303
                     F++N   +++                ++     H +R   AT   +A   
Sbjct: 196 LLKGKECAALFLSNRGSRISRRSVQARLTEWGQSQALDSKVHPHKLRHSFATHLLEASKD 255

Query: 304 AHELMATYGWKTVDQAETYTK 324
              +    G   +   + YT 
Sbjct: 256 LRAVQELLGHANLSTTQIYTH 276


>gi|301054011|ref|YP_003792222.1| DNA integration/recombination/invertion protein [Bacillus anthracis
           CI]
 gi|300376180|gb|ADK05084.1| DNA integration/recombination/invertion protein [Bacillus cereus
           biovar anthracis str. CI]
          Length = 282

 Score =  112 bits (280), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 43/276 (15%), Positives = 89/276 (32%), Gaps = 36/276 (13%)

Query: 101 QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL---FKWAVRQEYVAINP 157
            I    G     K+   HI+   ++      +    L   R+L      AV+Q  ++ NP
Sbjct: 8   AIKPSIGMVALYKLNVMHIQKCYKTAIDRGIANNSVLLMHRILKSALNLAVKQNIISRNP 67

Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217
               E PK++   I+ WT+E++++F    S+ S+  + +   + +G+R  +      Q +
Sbjct: 68  ADFAEIPKKERTSIQTWTEEEVKKFL-LHSQESRYHIGYLLAITTGMRMGEVLGLRWQDV 126

Query: 218 Q--------------NNIFSIKTQKTGTIITVELPDGFMKLLAMTPI------------- 250
                          +N      +   +  T+ +P   ++ L    +             
Sbjct: 127 DFEKHTVTINQTSGHDNQIKKTAKTNSSKRTIPVPKETIESLKKHKVLINQEKLRLGSAY 186

Query: 251 -GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELM 308
              +    N     +    F   F      AG+ +   H +R   ATI    G     + 
Sbjct: 187 QDFDLINCNEFGMIIKKANFRKKFIRAIHNAGIKEIKFHDLRHTHATILLKQGVNPKIIS 246

Query: 309 ATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVV 343
              G   +      Y+       +  +  +     +
Sbjct: 247 ERLGHTDISMTLSVYSHVL--PNMQEEAVKNFGKSI 280


>gi|167920732|ref|ZP_02507823.1| phage-related integrase [Burkholderia pseudomallei BCC215]
          Length = 275

 Score =  112 bits (280), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 49/270 (18%), Positives = 96/270 (35%), Gaps = 20/270 (7%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRK 127
           T + +   Y       + A  ++ +     D++ +           I   HIR  ++ RK
Sbjct: 3   TFRHVAERYLIEV-LPTKAAETQRTNLLQLDKLYQFFDCPPAPLDDIKPIHIRKYLDWRK 61

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAI-NPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            +P SA + +     +F  A         NPC  V   K + +G   +  + +  +K+ W
Sbjct: 62  QSPVSANREIALFSHIFNKAREWGATDRPNPCSGVR--KHREKGRDVYVGDGL--YKAVW 117

Query: 187 SEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
            +   P R A +    +G R +D  +   + +++   SI+  KTGT + +E+      LL
Sbjct: 118 EKADAPLREAMDLAYLTGQRPADVLKLDERDIRDGSVSIRQNKTGTRLRIEIVGELAALL 177

Query: 246 AMTPIGK-------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSAT 295
                 K           ++   + +        F      AG+ K       +R  + T
Sbjct: 178 ERLARRKIEHNPRSTRLIVDELGRPLGRAALRFRFDRARDAAGIPKADFQFRDLRAKAGT 237

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKG 325
              +  +      +  G  +V   E Y + 
Sbjct: 238 D-KEHASDLRGAQSLLGHGSVAMTEHYVRK 266


>gi|37525093|ref|NP_928437.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|37527552|ref|NP_930896.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|36784519|emb|CAE13419.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
 gi|36786987|emb|CAE16061.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 370

 Score =  112 bits (280), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 57/305 (18%), Positives = 104/305 (34%), Gaps = 32/305 (10%)

Query: 64  PRKKPTTLKWLISEY---RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT---K 117
           P   P +L  L+  +   R+  +W    +  +     +F     + G +    IT    +
Sbjct: 24  PAHDPKSLYALLLRFVVWRQERNWSESTLKVQTHHTYHFILWATERGLYYAADITRPILE 83

Query: 118 HIRSGVESRKHT------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
             +  +   + T        +    L  ++V FKW  +Q  +  NP   +E P+ +    
Sbjct: 84  RYQRYLYQYRKTNGEPLSTRTQRTQLEPLKVWFKWLTKQNLILANPAADIELPRLEKHLP 143

Query: 172 R-PWTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSI 224
           R   T ++ +Q  +        G + R   E L  +G+R  +  R  V  +       +I
Sbjct: 144 RYILTIDETEQILAQPDLTTLQGIRDRALMELLWSTGMRRGELTRLDVYSVDGKRKTVTI 203

Query: 225 KTQKTGTIITVELPDGFMKLLAM-----------TPIGKETFFINNDKQKMNATQFSIWF 273
           +  K      + L +  +  L              P  K  F   +    + A   S   
Sbjct: 204 RQGKGNKDRVLPLGERALSWLQRYQQQVRPQLIVNPDVKALFVAMDGLDGLQANGISNLV 263

Query: 274 KAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            A     G+ K    H  R   AT   + GA    + A  G  +V+  + YT+ + R   
Sbjct: 264 TAYINAVGIEKKGACHLFRHAMATQMLENGADLRWIQAMLGHASVESTQVYTQVSIRALQ 323

Query: 332 GIKNS 336
            +  S
Sbjct: 324 AVHAS 328


>gi|289624627|ref|ZP_06457581.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289651147|ref|ZP_06482490.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|298489345|ref|ZP_07007359.1| Tyrosine recombinase xerC [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|298156136|gb|EFH97242.1| Tyrosine recombinase xerC [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
          Length = 299

 Score =  112 bits (280), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 37/259 (14%), Positives = 93/259 (35%), Gaps = 19/259 (7%)

Query: 85  GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIR---SGVESRKHTPSSAIQFLT 138
             ++ ++  ++     ++    +K+    +  +  +H+R   +    +  +  S  + L+
Sbjct: 16  RQVSPHTLEAYRRDLGKVLAYCQKAQLSSWNDLDIQHLRSFTARQHQQGQSSRSLARMLS 75

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRL 194
           ++R  +K+  R+     +P   +  PK +    +    +   Q      E      + + 
Sbjct: 76  AVRGFYKYLNREGICQHDPANGLSPPKGERRLPKTLDTDRTAQLLDGGVEDDFLAHRDQA 135

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV--------ELPDGFMKLLA 246
             E L  SGLR S+     +  L      ++    G+   V        +  + ++ L A
Sbjct: 136 ILELLYSSGLRLSELTGLNLDQLDLRDGLVQVLGKGSKTRVLPVGSKARQALEIWLPLRA 195

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAK-ATKAGVNKSAHGVRKFSATISADAGATAH 305
           +T    +  F++   +++      +  KA    + G N   H +R   A+   ++     
Sbjct: 196 LTNPQDDAVFVSQQGKRLGPRTIQVRLKAAGERELGQNLHPHMLRHSFASHLLESSQDLR 255

Query: 306 ELMATYGWKTVDQAETYTK 324
            +    G   +   + YT 
Sbjct: 256 AVQELLGHADIKTTQIYTH 274


>gi|257887688|ref|ZP_05667341.1| phage integrase [Enterococcus faecium 1,141,733]
 gi|257823742|gb|EEV50674.1| phage integrase [Enterococcus faecium 1,141,733]
          Length = 301

 Score =  112 bits (280), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 48/281 (17%), Positives = 100/281 (35%), Gaps = 34/281 (12%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFE---SYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127
           L++LI E          +  ++ ++E    +F   + +SGD D  K     +R  + +  
Sbjct: 11  LRYLIVE-------RGYSEKTKEAYEEDILHFKHFLEESGDADLLKAEYFTVRVYLSALA 63

Query: 128 H-----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
                 + +S  + + S+R  +++ +++E +  NP   V   K+     R + + +MQ  
Sbjct: 64  DHRPSYSRNSISRKIASLRSFYQYLLKEEVIKENPFSYVHLKKKNLRLPRFFYENEMQAL 123

Query: 183 KSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVEL 237
               +  S    + R   E L  SG+R S+     V  +  ++   +   K        L
Sbjct: 124 FDSVAGDSTLDLRNRALLEVLYGSGIRLSECSNLLVSDIDFDSEVMLIHGKGNKERYAPL 183

Query: 238 ------------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS 285
                        +G   L+       +  F+N+  + +  T           K+ ++  
Sbjct: 184 GSFAQDALQEYFTEGRQVLMTKYHEEHDIVFVNHHGKPITPTGIEYVLNQIIKKSSLDSD 243

Query: 286 --AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              H +R   AT   + GA    +    G   +   + Y  
Sbjct: 244 IHPHMLRHTFATHLLNNGADLRTVQELLGHANLSTTQIYAH 284


>gi|224539317|ref|ZP_03679856.1| hypothetical protein BACCELL_04222 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519064|gb|EEF88169.1| hypothetical protein BACCELL_04222 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 393

 Score =  112 bits (280), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 48/280 (17%), Positives = 100/280 (35%), Gaps = 26/280 (9%)

Query: 75  ISEYRKSAHWGSLAVNSRIS-FESYFDQIIRKSG-DFDYRKITTKHIRSGVESRK----- 127
           +++Y +S          R +   +    + R +  D    +I   +I   ++  K     
Sbjct: 105 LTDYIQSVAEKKSENEVRKTVLHAVVYHLRRYNPNDIQLSRIDKDYILGFLDYLKTAKQT 164

Query: 128 -------HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE---RPKRKTEGIRPWTKE 177
                     ++ + +   +R    +AV +E ++ NP   ++   +P +        T +
Sbjct: 165 HTKKEKLLHVNTQVYYYKMLRYCLNYAVSEELISANPMNKIKNEEKPHKHRTEREYLTID 224

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTI 232
           ++++           + AF F  + GLR SD        ++ +        I  +KT   
Sbjct: 225 ELRKLAQTPFYNGLLKKAFLFSCFCGLRHSDIIALTWGDIEMDDDGNSRLYIIQKKTKEA 284

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290
           I++ L    +K L      KE   I   K+ +   + +      A +AG+ K  + H  R
Sbjct: 285 ISLPLSQEAIKQLPKREDAKEDDII--FKKLITLGRTNEILPKWAEQAGIKKHITFHTAR 342

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
              AT+    G   + +    G   +   + Y K  D  +
Sbjct: 343 HTHATMLLTLGVDLYTVSKLLGHTNIQTTQIYAKLVDESK 382


>gi|331012748|gb|EGH92804.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 299

 Score =  112 bits (280), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 37/259 (14%), Positives = 92/259 (35%), Gaps = 19/259 (7%)

Query: 85  GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIR---SGVESRKHTPSSAIQFLT 138
             ++ ++  ++     ++    +K+    +  +  +H+R   +    +  +  S  + L+
Sbjct: 16  RQVSPHTLEAYRRDLGKVLAYCQKAQLSSWNDLDIQHLRSFTARQHQQGQSSRSLARMLS 75

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRL 194
           ++R  +K+  R+     +P   +  PK      +    +   Q      E      + + 
Sbjct: 76  AVRGFYKYLNREGICQHDPANGLSPPKGDRRLPKTLDTDRTAQLLDGGVEDDFLAHRDQA 135

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV--------ELPDGFMKLLA 246
             E L  SGLR S+     +  L      ++    G+   V        +  + ++ L A
Sbjct: 136 ILELLYSSGLRLSELTGLNLDQLDLRDGLVQVLGKGSKTRVLPVGSKARQALEIWLPLRA 195

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAK-ATKAGVNKSAHGVRKFSATISADAGATAH 305
           +T    +  F++   +++      +  KA    + G N   H +R   A+   ++     
Sbjct: 196 LTNPQDDAVFVSQQGKRLGPRTIQVRLKAAGERELGQNLHPHMLRHSFASHLLESSQDLR 255

Query: 306 ELMATYGWKTVDQAETYTK 324
            +    G   +   + YT 
Sbjct: 256 AVQELLGHADIKTTQIYTH 274


>gi|298571314|gb|ADI87658.1| tyrosine recombinase XerC [uncultured Nitrospirae bacterium MY2-1F]
 gi|298571415|gb|ADI87756.1| tyrosine recombinase XerC [uncultured Nitrospirae bacterium
           MY3-11A]
          Length = 288

 Score =  112 bits (280), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 40/265 (15%), Positives = 88/265 (33%), Gaps = 25/265 (9%)

Query: 85  GSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRV 142
            + + ++  +++   ++     K           +   +    +    SS ++ L++++ 
Sbjct: 5   KNASPHTLRAYKKDLEEFAAFVKKDPASVDLYDIRGFVAAQSKQGLAKSSVMRRLSTVKA 64

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFWSEGSQPRLAFEF 198
            F +      V  NP   V  PK         +K+D    M++ +      ++ +   E 
Sbjct: 65  FFNYLASIGAVTANPTRLVPSPKVPKHLPNFLSKDDTFTMMEKAEGIGFTAARNKAILEL 124

Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDGFMKLLAMTPIGKE---- 253
              SGLR S+   A ++ +      +K +  G     V +    +  L    + +     
Sbjct: 125 FYSSGLRVSELAGADMESINLKQAMVKVRGKGKKERIVPIGSYALGALKTYLVERLLIKE 184

Query: 254 ------------TFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISAD 299
                         FIN+  +++            A   GV  +   H +R   AT    
Sbjct: 185 DTTRPRISTDPAALFINSSGERLTDRHIRRIVVKFARLTGVEGAVGPHTLRHTFATHLLQ 244

Query: 300 AGATAHELMATYGWKTVDQAETYTK 324
           +GA    +    G  ++   + YT 
Sbjct: 245 SGADLRVIQELLGHASLSTTQKYTH 269


>gi|313501207|gb|ADR62573.1| XerC [Pseudomonas putida BIRD-1]
          Length = 299

 Score =  112 bits (280), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 35/259 (13%), Positives = 86/259 (33%), Gaps = 19/259 (7%)

Query: 85  GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLT 138
             ++ ++   +    +++     + G  D++ +  + +R  +        +P S  + L+
Sbjct: 16  RQVSEHTSQGYRRDLEKVIAYCEEHGIADWQALQIQQLRQLIARLHHHGQSPRSLARLLS 75

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW-TKEDMQQFKSFWS---EGSQPRL 194
           ++R L+++  R+     +P   +  PK +    +   T   +Q             + + 
Sbjct: 76  AVRGLYRYLNREGLCQHDPATGLSAPKGERRLPKVLDTDRALQLLDGGVDDDFIARRDQA 135

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPI--- 250
             E    SGLR S+     + HL      ++   K G    + +     + L        
Sbjct: 136 ILELFYSSGLRLSELTNLDLDHLDLAAGLVQVLGKGGKARVLPVGRKAREALQAWYRLRG 195

Query: 251 ----GKETFFINNDKQKMNATQFSIWFKAK-ATKAGVNKSAHGVRKFSATISADAGATAH 305
                    FI     +++     +  K     + G +   H +R   A+   ++     
Sbjct: 196 IGNPRDRAVFITRQGNRISPRAVRLRVKVAGERELGQHLHPHMLRHSFASHVLESSQDLR 255

Query: 306 ELMATYGWKTVDQAETYTK 324
            +    G   +   + YT 
Sbjct: 256 AVQEMLGHADISTTQIYTH 274


>gi|48477921|ref|YP_023627.1| DNA integration/recombination/invertion protein [Picrophilus
           torridus DSM 9790]
 gi|48430569|gb|AAT43434.1| DNA integration/recombination/invertion protein [Picrophilus
           torridus DSM 9790]
          Length = 276

 Score =  112 bits (280), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 47/250 (18%), Positives = 87/250 (34%), Gaps = 14/250 (5%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK-HTPSSAIQFLTSMRVLFKW 146
           ++N+   ++S     I          I    I             S      SM+ +  +
Sbjct: 17  SLNTIKEYKSLVRDFINYINKKP-EDINDFDIEDYKRHLAVDKRYSKSSQYLSMKAIKLF 75

Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRC 206
              ++        ++  P+R  +        + +      S   +       LLYSG+R 
Sbjct: 76  LQSRDIKIP---RTLNAPRRNKKIPVYLNTNEAKNLIKASSNNRKHLAIVSLLLYSGIRV 132

Query: 207 SDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLA-----MTPIGKETFFINN 259
           S+ C   ++ +    NI  +++ K G      +PD   ++L            +TFFI+N
Sbjct: 133 SELCNLKIEDIDLNENIIYVRSGKGGKDRIAIIPDECSEILRSYYNDRLKYPGDTFFISN 192

Query: 260 DKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVD 317
            K + + +      K  A +AG+ K  + H +R   AT     G     +    G  +V 
Sbjct: 193 KKSRYDTSTIERLIKKLAVRAGIEKHVTPHVLRHTFATSVLRNGGDIRFIQQILGHASVA 252

Query: 318 QAETYTKGAD 327
             + YT   D
Sbjct: 253 TTQIYTHIDD 262


>gi|330878502|gb|EGH12651.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 290

 Score =  112 bits (280), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 36/259 (13%), Positives = 92/259 (35%), Gaps = 19/259 (7%)

Query: 85  GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIR---SGVESRKHTPSSAIQFLT 138
             ++ ++  ++     ++    +K+    +  +  +H+R   +    +  +  S  + L+
Sbjct: 7   RQVSPHTLEAYRRDLSKVLTFCQKAQLSSWNDLDIQHLRSFTARQHQQGQSSRSLARMLS 66

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRL 194
           ++R  +K+  R+     +P   +  PK +    +    +   Q      E      + + 
Sbjct: 67  AVRGFYKYLNREGLCQHDPANGLSPPKGERRLPKTLDTDRTAQLLDGGVEDDFLAHRDQA 126

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV--------ELPDGFMKLLA 246
             E L  SGLR S+     +  L      ++    G+   V        +  + ++ L A
Sbjct: 127 IMELLYSSGLRLSELTGLNLDQLDLRDGLVQVLGKGSKTRVLPVGSKARQALETWLPLRA 186

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAK-ATKAGVNKSAHGVRKFSATISADAGATAH 305
           +T    +  F++   +++      +  K     + G N   H +R   A+   ++     
Sbjct: 187 LTNPQDDAVFVSQQGKRLGPRAVQLRIKTAGERELGQNLHPHMLRHSFASHLLESSQDLR 246

Query: 306 ELMATYGWKTVDQAETYTK 324
            +    G   +   + YT 
Sbjct: 247 AVQELLGHADIKTTQIYTH 265


>gi|146305305|ref|YP_001185770.1| site-specific tyrosine recombinase XerC [Pseudomonas mendocina ymp]
 gi|145573506|gb|ABP83038.1| tyrosine recombinase XerC subunit [Pseudomonas mendocina ymp]
          Length = 315

 Score =  112 bits (280), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 38/275 (13%), Positives = 95/275 (34%), Gaps = 20/275 (7%)

Query: 70  TLKWLISEYRKS-AHWGSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIR---SG 122
           T +  +  Y +       ++V++   +     ++       G  D+  + T+ +R   + 
Sbjct: 17  TFEAHLDAYLEHLRRERQVSVHTLDGYRRDLGKLLAFCEAEGLSDWAALDTRSLRRLIAR 76

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           + ++     S  + L++ R L+++ +R+     +P   +  PKR+    R    +   Q 
Sbjct: 77  LHAQGLASRSLARLLSATRGLYQYLLREGLCRHDPAAGLSPPKRERRLPRTLDADRSAQL 136

Query: 183 KSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-VEL 237
                E      + +   E    SGLR S+     V  L      ++ +  G     + +
Sbjct: 137 LDGAVEDDFIARRDQAMLELFYSSGLRLSELVGLDVDGLDLPAGLVRVRGKGNKTRELPV 196

Query: 238 -------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK-ATKAGVNKSAHGV 289
                   + ++ L  +        FI+   +++      +  +     + G +   H +
Sbjct: 197 GSMARQALEQWLPLRKLAGPSDGAVFISQQGRRLGPRAVQLRVRQAGVRELGQHLHPHML 256

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           R   A+   ++      +    G   +   + YT 
Sbjct: 257 RHSFASHMLESSQDLRAVQELLGHADIATTQIYTH 291


>gi|307322976|ref|ZP_07602243.1| integrase family protein [Sinorhizobium meliloti AK83]
 gi|306891378|gb|EFN22297.1| integrase family protein [Sinorhizobium meliloti AK83]
          Length = 292

 Score =  112 bits (280), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 40/269 (14%), Positives = 88/269 (32%), Gaps = 26/269 (9%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129
           L     +     + ++N++ S+        R  G      +  + IR+        +K  
Sbjct: 4   LRQRMSEDMQVRNFSLNTQHSYLQQVSLFARHFGKSP-DLLGREDIRTYQVYLANEKKLA 62

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
           P+S    ++++R  F   + +++V       V  P++  +     + +++QQF       
Sbjct: 63  PNSIHIAISALRFFFSVTLERDWVP----EEVLLPRKPQKLPIILSPDEVQQFLG-CVLD 117

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLA- 246
            +          +GLR S++       + +    ++    K      V L    +++L  
Sbjct: 118 LKHHAILTTCYAAGLRISEAVHLKTTDIDSQRMVVRVEQGKGQKDRYVMLSPKLLEILRD 177

Query: 247 --MTPIGKETFFINND-KQKMNATQFSIWFKAKATKA------GVNKSAHGVRKFSATIS 297
                  KE  F  +     +              KA          + H +R   A   
Sbjct: 178 YWRMRRPKEWLFPGDRTGHPITRDAVG----QACAKAHDLSRLSKPVTPHSLRHAFAVHL 233

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGA 326
            +AGA    +    G +++     Y + A
Sbjct: 234 LEAGADVRTIQLLLGHRSLATTAHYLRIA 262


>gi|251780259|ref|ZP_04823179.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
 gi|243084574|gb|EES50464.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
          Length = 329

 Score =  112 bits (280), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 48/281 (17%), Positives = 100/281 (35%), Gaps = 29/281 (10%)

Query: 75  ISEYRKSA----HWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRSGVE----S 125
           I+ Y+K       +  L        +  F+ I I    D   + I  + + + +      
Sbjct: 35  IAAYKKDLTIFFRFMKLYRGIVKDKKIEFEDIDITDINDEFLKSIKLRDLYAFMSFIEKY 94

Query: 126 RKHTPSSAIQFLTSMRVLFKWAV-RQEYVAINPCLSVERPKRKTEGIRPWTKED----MQ 180
           R ++  +  + + +++  FK+   + + +  NP   +E PK         T +     + 
Sbjct: 95  RNNSAYARARKVATLKSYFKFLQGKAKIIVDNPTTELESPKINKRQPVYLTLDQSIHLLS 154

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
                    ++        L  G+R S+ C   ++ ++N+I  I   K     TV L + 
Sbjct: 155 SLDKNNKNYARDYCILTLFLNCGMRLSELCGISIEKIRNDILVII-GKGNKERTVYLNEA 213

Query: 241 FMKLL----------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAH 287
            +K +             P  K+  F+++  + +N     I  K     AG+     + H
Sbjct: 214 CLKSIENYMRIRDDSKALPEYKKFLFLSSHNKPINQRTVEIMIKKHIKNAGLTDGKYTPH 273

Query: 288 GVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGAD 327
            +R  +AT+    G      L    G + +   + YT   +
Sbjct: 274 KLRHTAATLMYKYGDVDIRSLQNILGHENISTTQIYTHVDN 314


>gi|239948071|ref|ZP_04699824.1| integrase [Rickettsia endosymbiont of Ixodes scapularis]
 gi|239922347|gb|EER22371.1| integrase [Rickettsia endosymbiont of Ixodes scapularis]
          Length = 233

 Score =  112 bits (280), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 80/201 (39%), Gaps = 8/201 (3%)

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE--GS 190
           A +FL  +  +F  A+    + +NP + +++ + ++   R  T+E++ QF +  +E    
Sbjct: 13  ANRFLEILSPVFSKAIEWGLIKVNPVIGIKKHQEQSR-DRYLTREEIPQFFTAIAEEKNQ 71

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMT 248
             +  F   LY+ +   +      + +   +    +   K G    + L D  +++L   
Sbjct: 72  VMKDFFLIALYTSVHKDNLLTMKWEQVSFTDKQLYLPETKNGDPHHLPLLDQAVEILKAR 131

Query: 249 PIGKET--FFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAH 305
                +   F +   +  +  +    +K+   KAG+ N   H +R+   +  A  GA  +
Sbjct: 132 KEQSTSTWVFPSETSRSGHLQEPKKAWKSICKKAGIENLRIHDLRRTIPSWMAMTGANQY 191

Query: 306 ELMATYGWKTVDQAETYTKGA 326
            +      +       YT+ A
Sbjct: 192 VIGQLLNHRDPRSTAIYTRLA 212


>gi|294101938|ref|YP_003553796.1| integrase family protein [Aminobacterium colombiense DSM 12261]
 gi|293616918|gb|ADE57072.1| integrase family protein [Aminobacterium colombiense DSM 12261]
          Length = 311

 Score =  112 bits (280), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 47/297 (15%), Positives = 102/297 (34%), Gaps = 19/297 (6%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
           K   T + ++  Y  +     LA  +   +  +  +      +        K       S
Sbjct: 10  KTEETWQQVVERYVLTRKADGLAPRTVKDYRYHLTRFFTAYPEG-LNPDKAKRCVLEYMS 68

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
            + +P      L  +R  F+W V +  +  NPC  +   K + +  +  + + ++   + 
Sbjct: 69  LERSPGYHNMVLKYLRCFFRWTVNEGILYSNPCSGIRSRKAQPKIAQH-SPDVVKALLAL 127

Query: 186 WSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK--TQKTGTIITVEL 237
             +    G +        L +G+R  ++    V+ +     +  ++  T KT    T+ +
Sbjct: 128 PDQSTYTGLRSYALLLLSLDTGIRPREALSLRVEDVSIPARVVVVRAETAKTRVQRTLPI 187

Query: 238 PD----GFMKLLAMTPIG--KETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRK 291
            D      MKL+++ P        F + D Q +    +    K    K G + + + +R 
Sbjct: 188 SDQTAQAIMKLVSIRPKEWRNAPLFCSRDGQPLRVNSWYHTVKGYGEKIGADITPYSLRH 247

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
             A            L    G   +D  + Y   A      ++    ++S V++  P
Sbjct: 248 LFALYFLRNNGNTFALQRIMGHDNLDTTKIYVALAQS---DLEEQHELASPVNALFP 301


>gi|25028473|ref|NP_738527.1| site-specific tyrosine recombinase XerC [Corynebacterium efficiens
           YS-314]
 gi|34222795|sp|Q7ZAK0|XERC_COREF RecName: Full=Tyrosine recombinase xerC
 gi|23493758|dbj|BAC18727.1| putative phage integrase/recombinase XerC [Corynebacterium
           efficiens YS-314]
          Length = 310

 Score =  112 bits (280), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 37/265 (13%), Positives = 92/265 (34%), Gaps = 19/265 (7%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRV 142
             +  +   + S    +     D    + T  ++R+ +        + ++  +   S++ 
Sbjct: 40  GRSDATVRGYRSDLRHMAATIPD--LTEFTLPNLRAWLGRAVEEGKSRATLARRTASVKS 97

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS-----QPRLAFE 197
              WAV+   ++ +    +  PK      R   +    +F    +  +     +     E
Sbjct: 98  FSTWAVKNGLISGDEAARLVSPKVTRNLPRVLGEVQAGEFMGSAAADTEDEFRRDSAILE 157

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVEL-------PDGFMKLLAMTP 249
            L  +G+R S+ C   +  + ++   ++   K      +          + +++      
Sbjct: 158 LLYATGMRVSELCGLDLGDVDHHRRMVRVLGKGDKERMIPFGKAAADALEQWLEARDRMA 217

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELM 308
             ++  F+     +++A Q        A  AG +  S H +R  +AT   D GA   ++ 
Sbjct: 218 KVEDAMFVGVRGGRIDARQIRRIVDRTAQVAGADHLSPHSLRHTAATHLLDGGADLRQVQ 277

Query: 309 ATYGWKTVDQAETYTKGADRIRLGI 333
              G  ++   + YT  + +  L  
Sbjct: 278 EMLGHSSLQTTQIYTHVSSQRLLEA 302


>gi|149199225|ref|ZP_01876263.1| tyrosine recombinase [Lentisphaera araneosa HTCC2155]
 gi|149137650|gb|EDM26065.1| tyrosine recombinase [Lentisphaera araneosa HTCC2155]
          Length = 292

 Score =  112 bits (280), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 40/276 (14%), Positives = 100/276 (36%), Gaps = 24/276 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSG---DFDYRKITTKHIRSGVESRKHTP---SSAIQFLT 138
             L+ N+  ++ +  +          + +Y  I    + +  E  K+     S+  + L 
Sbjct: 13  RGLSQNTIDAYINDLNDFTAYQEQKLNKEYPSINKDDLLNYCEDCKNRELNDSTISRRLV 72

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG----SQPRL 194
           ++++ F++  +++ V  +    +E  +         +  ++++    + E      + + 
Sbjct: 73  TLKIFFRFLYQEKIVPKDVGEHLESARLSRLLPDYLSLPEIERLLHIYDEAIPLQFRNKF 132

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVE-------LPDGFMKLLA 246
             E L   GLR S+ C             ++ +  G+   +V        +   ++K + 
Sbjct: 133 IIELLYSCGLRISELCGLRTDSFNYESGFLRVKGKGSKERSVPFGTQVASMSRQYIKNIR 192

Query: 247 MTPIGKET---FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301
                K       ++N+ + +  ++   + K  A KA +NK    H +R   A+      
Sbjct: 193 PQLCKKNNPPELIVSNNGRPLTRSRVWQFLKEAAIKAEINKNLHPHVLRHSFASHLLSNN 252

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
           A    +    G   +   E YT   ++ RL   + +
Sbjct: 253 ADLRIIQELLGHADIATTEIYTH-VEKTRLQNIHQK 287


>gi|88608752|ref|YP_506043.1| tyrosine recombinase XerD [Neorickettsia sennetsu str. Miyayama]
 gi|88600921|gb|ABD46389.1| tyrosine recombinase XerD [Neorickettsia sennetsu str. Miyayama]
          Length = 305

 Score =  112 bits (280), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 45/265 (16%), Positives = 87/265 (32%), Gaps = 20/265 (7%)

Query: 85  GSLAVNSRISFE---SYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMR 141
            +  +N+  S+          ++K G  D  K       + + +++ + ++  + + + R
Sbjct: 20  RNATLNTISSYRTDLRLLSTFLKKRGLKDASKENLYEYIANLRAQQLSNATIRRKIATFR 79

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP----RLAFE 197
             F +   ++  + NP  S+E PK+     R  TKE++    +F   G           E
Sbjct: 80  QFFSFLYSEKISSTNPAQSLELPKKTLVLPRYLTKEEVFSLLTFLEAGQPATLRLYAILE 139

Query: 198 FLLYSGLRCSDSCRAGVQHLQ----NNIFSIKTQKTGTIITVELPDG----FMKLLAMTP 249
            L  SG+R S+     V  ++         I   K      +             L    
Sbjct: 140 ILYSSGMRVSELINMKVSDIRPLLNGQQHIIIVGKGRKERILPFSKKAIQVLKLYLTSYQ 199

Query: 250 IGKETFFINNDK--QKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATA 304
                 F    +  + M+  +     K  A K  ++    S H +R   AT   D G   
Sbjct: 200 SNSPWLFPGAGRKDRPMSRQRLGQLLKELALKCKIDPKRISPHVIRHSFATHLLDNGMDI 259

Query: 305 HELMATYGWKTVDQAETYTKGADRI 329
             +    G   +   + YT  +   
Sbjct: 260 KVVQDLLGHAQITTTQIYTHISQHK 284


>gi|254452498|ref|ZP_05065935.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198266904|gb|EDY91174.1| phage integrase [Octadecabacter antarcticus 238]
          Length = 319

 Score =  112 bits (280), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 47/260 (18%), Positives = 91/260 (35%), Gaps = 23/260 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFD--YRKITTKHIRSGVESRKHTPSSAIQFLTSMRV 142
            +L   S+ S      +     G           K+ +  +     +  +  Q +T ++ 
Sbjct: 39  RNLGPASKSSHLRACKRFAAWLGRSPETATPDDVKYFQQYLVESGVSICTRNQTMTGVKF 98

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202
           LF+  +R+     +    +   K   +     +K+++++F +      + R+        
Sbjct: 99  LFRVTLRR----HDLVAEIFHLKEPVKIPLVLSKKEIKRFLAMAPS-LKARVMLSLAYGC 153

Query: 203 GLRCSDSCRAGVQHLQNN--IFSIKTQKTGTIITVELPDGFMKLLAMT------------ 248
           GLR  +  R  V  + ++  I  I   K      V LP   + LL               
Sbjct: 154 GLRAGEVVRLKVGDIDSDQEIIRIVQSKGRKDRNVMLPVDILSLLRDWWKERPTSQDRDV 213

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHE 306
           P+ +   F     + ++A Q S  FK  A +AG+ K  + H +R   AT   ++G     
Sbjct: 214 PVSERVLFPGYCGKYLSARQISRLFKETAQEAGITKPVTLHTLRHSFATHLLESGVDIRV 273

Query: 307 LMATYGWKTVDQAETYTKGA 326
           + A  G   +     Y   A
Sbjct: 274 IQALLGHAKLTTTALYASVA 293


>gi|158520653|ref|YP_001528523.1| integrase family protein [Desulfococcus oleovorans Hxd3]
 gi|158509479|gb|ABW66446.1| integrase family protein [Desulfococcus oleovorans Hxd3]
          Length = 397

 Score =  112 bits (280), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 54/275 (19%), Positives = 99/275 (36%), Gaps = 20/275 (7%)

Query: 92  RISFESYFD---QIIRKSGDFDYRKITTKHIRSGVE------SRKHTPSSA---IQFLTS 139
           +  +E   +    +  K G      IT   I   +       S++  P +A      +  
Sbjct: 116 KSWYEDAINYQTHLAPKLGQKRLDAITQLDIERLLSGLRKGTSKRGKPYAAATIKHQIVL 175

Query: 140 MRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA--F 196
           +  +F  A R   Y   NPC  + +P+   +     T +++ +      +      A   
Sbjct: 176 LTRMFNVAARWGKYTGPNPCKLIAKPRLNNQKTGFLTDDELTRLLDVLEQWPDRMSAGFI 235

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ--KTGTIITVELPDGFMKLLAMTPIGKET 254
            FLL++GLR  +  R   Q +  +  ++  +  K G    + L +  +  L   P   ET
Sbjct: 236 AFLLHTGLRRGELFRLTWQDVNMDRQTLTVRDPKGGRDTVLPLSEKAIDALNSLPREHET 295

Query: 255 FFINNDKQKMNATQFSI-WFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYG 312
            F+   +       F   W++ K   A       H +R   A+    AG   + + A   
Sbjct: 296 PFVFYGRNGAQRADFRHPWYRIKQAAALPEGFRLHDLRHHFASALVSAGTNLYTVQALLT 355

Query: 313 WKTVDQAETYTKGADRI-RLGIKNSRRISSVVDSD 346
            K+    + Y   +D+  R  +K S  +S    SD
Sbjct: 356 HKSAAMTQRYAHLSDQALRDAVKLSDDLSKKATSD 390


>gi|118578727|ref|YP_899977.1| tyrosine recombinase XerC [Pelobacter propionicus DSM 2379]
 gi|166918893|sp|A1AKP9|XERC_PELPD RecName: Full=Tyrosine recombinase xerC
 gi|118501437|gb|ABK97919.1| tyrosine recombinase XerC [Pelobacter propionicus DSM 2379]
          Length = 302

 Score =  112 bits (280), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 47/272 (17%), Positives = 96/272 (35%), Gaps = 23/272 (8%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQ----IIRKSGDF----DYRKITTKHIRSGVES 125
           I  +R       +L+ ++  +++    Q    +  + GD     D   +  +   + + +
Sbjct: 8   IRAFRLHLETERNLSPHTLAAYDRDLRQFAAFVAAEMGDSATAEDVDHLLLRRYLAQLGT 67

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +    SS  + L ++R  ++  +R   V+ NP   +  PKR+         +        
Sbjct: 68  QIRK-SSQGRKLAAIRSFYRHLLRLGSVSRNPAELIATPKREQRLPFHLDIDQATALMET 126

Query: 186 WSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240
            +E    G + R   E L  SGLR S+     ++ +      ++   K G    V L   
Sbjct: 127 PTEEENYGLRDRAILETLYSSGLRVSELTGLAIRDINLAGGMLRVMGKGGKERIVPLGSR 186

Query: 241 FMKLL------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATK-AGVNK-SAHGVRKF 292
            ++ +                F+N+   ++N    +    A   + A     S H +R  
Sbjct: 187 AVRAIQEYLDSRGGGTATAPLFLNSRGDRINRRSVARIVDAHVHEIAAFKHISPHTLRHT 246

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324
            AT   + GA    +    G  ++   + YT 
Sbjct: 247 FATHMLEGGADLRAIQELLGHASLSTTQKYTH 278


>gi|293400410|ref|ZP_06644556.1| recombinase [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291306810|gb|EFE48053.1| recombinase [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 375

 Score =  112 bits (280), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 50/344 (14%), Positives = 132/344 (38%), Gaps = 22/344 (6%)

Query: 6   RLPPFVTKERT--RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63
           R  P+V       RH         G+ ++ ++   +E+  +  + S    +     +   
Sbjct: 42  RRKPWVACVTISLRHSND-----AGYKQKRKIIGYYETQEMAEF-SLWNYNKNPVLFEEI 95

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
            +    T + +  E+  S  +  ++ N+   +++ + +           ++ T H +  +
Sbjct: 96  QKLGTITFETIYQEW-SSMKFRCISQNAINGYKAAYAK-CEPIWHCKLSELKTIHFQRIM 153

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL--SVERPKRKTEGIRPWTKEDMQQ 181
           +  + + +S ++  + M ++ ++AV+ + +  N     ++ + +R  E  +P+++++++ 
Sbjct: 154 DESELSVASDLKLKSLMVLVCEYAVQNDIINKNYAKYVTINKKERPPEIHKPFSEKEIEV 213

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT---GTIITVELP 238
             +  +           ++Y+G R S+  +   + +     +I+       G    V + 
Sbjct: 214 LFAHDNIPFVD--TILIMIYTGFRVSELFQIKTKDVDLQNLTIRGGNKTEAGKNRVVPIH 271

Query: 239 DGFMKL-LAMTPIGKETFFIN-NDKQKMNATQFSI-WFKAKATKAGVNKSAHGVRKFSAT 295
           +      L    +G E    +     K+N   +   +F        +N   H  R   AT
Sbjct: 272 ERIQDYVLNYYNMGNEYLICDLETGAKINYHAYRNNYFDKIMNMLDMNHLPHDCRHTFAT 331

Query: 296 ISADAGATAHELMATYGWKTVDQAE-TYT-KGADRIRLGIKNSR 337
             ++ GA A  +    G  +    E  YT K   ++R  I + +
Sbjct: 332 RLSNFGANATSIKRLIGHTSYATTEKIYTHKDIGQLRRAIFSLK 375


>gi|304316783|ref|YP_003851928.1| integrase [Thermoanaerobacterium thermosaccharolyticum DSM 571]
 gi|302778285|gb|ADL68844.1| integrase family protein [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 288

 Score =  112 bits (280), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 38/262 (14%), Positives = 99/262 (37%), Gaps = 20/262 (7%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIR-----KSGDFDYRKITTKHIRSGVESRKHTPS 131
           +Y K+     L+ N+  S++    Q +        G F+ +K T  +  + ++ +  + +
Sbjct: 10  DYLKND--KKLSDNTVDSYKRDIIQFLEYLEKINIGCFEVKKATIINYMNLLKHKNRSQA 67

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----S 187
           +  + L+S++  +++      +   P  +++ PK + +     + + + +  S+      
Sbjct: 68  TISRHLSSIKSFYQYLFMNRLIDEEPAYTLDAPKIERKVPVTLSIDQVDKLLSYEFEKSE 127

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL-- 245
           +G + +   E L  +GL+ S+     +  +  N   I   K+     + + +  +  L  
Sbjct: 128 KGLRDKAIIEVLYATGLKVSELISLRIDDVNLNYGYIYC-KSAKERFIPIGESAVDALQN 186

Query: 246 ----AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA--GVNKSAHGVRKFSATISAD 299
                      +  F+N   + +         K        G + +   +R+  A    +
Sbjct: 187 YMSVRKNIKNNDHLFLNMRGEALTRQGCWKIIKEYTDIVNPGFDITPSILRRSFAKHLLE 246

Query: 300 AGATAHELMATYGWKTVDQAET 321
            GA    +    G+K+V+  E 
Sbjct: 247 NGADIRSVQEMLGYKSVNSNEL 268


>gi|167568329|ref|ZP_02361203.1| site-specific tyrosine recombinase XerC [Burkholderia oklahomensis
           C6786]
          Length = 306

 Score =  112 bits (280), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 44/283 (15%), Positives = 92/283 (32%), Gaps = 32/283 (11%)

Query: 72  KWLISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---K 127
             LI++Y  +  H   L+ ++  ++    D++ + +       +T   +R  V       
Sbjct: 3   ADLIADYLSNLRHVRKLSDHTLRAYAHELDELKKLANGRPLESLTAVDVRGAVARAHAGG 62

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            +  S    L++ R  ++W  +   +  NP  ++  PKR     +  + +D        +
Sbjct: 63  LSARSISHRLSAWRAFYRWFAQHVEMNANPVATIRAPKRAKMLPKALSVDDAAALMDAPA 122

Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRA-------------GVQHLQNNIFSIKTQKTG 230
            G+    +     E    SGLR ++                 G   L     +++  K  
Sbjct: 123 SGTAESLRDHAILELFYSSGLRLAELIGLDVAYVKIGEYRSEGWLDLAEAEVTVR-GKGD 181

Query: 231 TIITVELPDGFMKLLAMTPIGKETF--------FINNDKQKMNATQFSIWFKAKATKAGV 282
               V +    +  L      +  F        F++    +M+        K  A  AG+
Sbjct: 182 KERKVPVGRKAIDALNAWLAVRGEFVRHDPHPLFLSVRGNRMSPGVVRGRVKRAALAAGI 241

Query: 283 NK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
                 H +R   AT    +      +    G  ++   + YT
Sbjct: 242 PANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYT 284


>gi|218699138|ref|YP_002406767.1| phage integrase [Escherichia coli IAI39]
 gi|218369124|emb|CAR16878.1| phage integrase [Escherichia coli IAI39]
          Length = 256

 Score =  112 bits (280), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 46/251 (18%), Positives = 88/251 (35%), Gaps = 19/251 (7%)

Query: 96  ESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--TPSSAIQFLTSMRVLFKWAVRQEYV 153
            S    I R   D     ITTK I + +         +SA    +++   F+ A+ + ++
Sbjct: 1   MSKIKAIRRGLTDAPLEDITTKEIAAMLNGYIDEGKAASAKLIRSTLSDAFREAIAEGHI 60

Query: 154 AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG 213
             NP  +    K +    R    E ++ +++  S     RLA E  + +G R  D C   
Sbjct: 61  TTNPVAATRAAKSEVRRSRLTADEYLKIYQAAESSPCWLRLAMELAVVTGQRVGDLCEMK 120

Query: 214 VQHLQNNIFSIKTQKTGTIITVE---------LPDGFMKLLAMTPIGKETFFINNDKQKM 264
              + +    ++  KTG  I +          +            +G ET   +  ++ +
Sbjct: 121 WSDIVDGYLYVEQSKTGVKIAIPTALHVDALGISMKETLDKCKEILGGETIIASTRREPL 180

Query: 265 NATQFSIWFKAKATKAGV-----NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
           ++   S +F      +G+       + H +R   +    +   +        G K+   A
Sbjct: 181 SSGTVSRYFMRARKASGLSFEGDPPTFHELR-SLSARLYEKQISDKFAQHLLGHKSDTMA 239

Query: 320 ETYTKGADRIR 330
             Y    DR R
Sbjct: 240 SQY--RDDRGR 248


>gi|256854437|ref|ZP_05559801.1| predicted protein [Enterococcus faecalis T8]
 gi|256709997|gb|EEU25041.1| predicted protein [Enterococcus faecalis T8]
 gi|315029064|gb|EFT40996.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX4000]
          Length = 302

 Score =  112 bits (280), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 44/284 (15%), Positives = 101/284 (35%), Gaps = 24/284 (8%)

Query: 50  ALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR--KSG 107
                +P     +         + +I E+         +  +  +++S         KS 
Sbjct: 2   CWFARSPFLSKFDKKGLFFMNWEDIILEFCMDITVRGFSKITIKNYKSKLRNTANFFKSI 61

Query: 108 DFDYRKITTKHIRSGVESRKHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP 164
           + +  +I  K I+S +   +      S+    ++ ++ LF + + ++Y+  NP + +ER 
Sbjct: 62  NVEPSQIEKKQIKSWIIDMQEKEMQASTINVSVSRLKKLFDYMLIEKYIDYNPFVDIERL 121

Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA------FEFLLYSGLRCSDSCRAGVQHLQ 218
           K + + I P    +++Q  +   +     +A         ++  GLR S+ C    + + 
Sbjct: 122 KEQRKVIYPLNDYEIKQMLTVAKKHPYKHIAQRNVVILMLMIECGLRISEVCEIRDEDIM 181

Query: 219 NNIFSIKTQKTGTIITVELPDGFMKLLAMTPI---------GKETFFINNDKQKMNATQF 269
           NN   I+  K      V +     K +                  F ++N  +K+N    
Sbjct: 182 NNQIIIRKSKNNKDRAVAVSPILKKEIIKYQRIKKRKFGLLEGNPFIVSNLGKKLNEKSI 241

Query: 270 SIWFKAKATKAGV-NK---SAHGVRKFSATISADAGATAHELMA 309
               +    +  + +    S H +R   A++    G   + L +
Sbjct: 242 WQIMQEIKKQIDIRDCVRFSGHTLRHTYASMQLRNGLDIYTLSS 285


>gi|229546531|ref|ZP_04435256.1| integrase/recombinase [Enterococcus faecalis TX1322]
 gi|307277324|ref|ZP_07558423.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX2134]
 gi|307296545|ref|ZP_07576367.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0411]
 gi|229308343|gb|EEN74330.1| integrase/recombinase [Enterococcus faecalis TX1322]
 gi|306496018|gb|EFM65604.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0411]
 gi|306505991|gb|EFM75162.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX2134]
 gi|315157760|gb|EFU01777.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0312]
          Length = 302

 Score =  112 bits (280), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 44/284 (15%), Positives = 101/284 (35%), Gaps = 24/284 (8%)

Query: 50  ALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR--KSG 107
                +P     +         + +I E+         +  +  +++S         KS 
Sbjct: 2   CWFARSPFLSKFDKKGLFFMNWEDIILEFCMDITVRGFSKITIKNYKSKLRNTANFFKSI 61

Query: 108 DFDYRKITTKHIRSGVESRKHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP 164
           + +  +I  K I+S +   +      S+    ++ ++ LF + + ++Y+  NP + +ER 
Sbjct: 62  NVEPSQIEKKQIKSWIIDMQEKEMQASTINVSVSRLKKLFDYMLIEKYIDYNPFVDIERL 121

Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA------FEFLLYSGLRCSDSCRAGVQHLQ 218
           K + + I P    +++Q  +   +     +A         ++  GLR S+ C    + + 
Sbjct: 122 KEQRKVIYPLNDYEIKQMLTVAKKHPYKHIAQRNVVILMLMIECGLRISEVCEIRDEDIM 181

Query: 219 NNIFSIKTQKTGTIITVELPDGFMKLLAMTPI---------GKETFFINNDKQKMNATQF 269
           NN   I+  K      V +     K +                  F ++N  +K+N    
Sbjct: 182 NNQIIIRKSKNNKDRAVAVSPILKKEIIKYQRIKKRKFGLLEGNPFIVSNLGKKLNEKSI 241

Query: 270 SIWFKAKATKAGV-NK---SAHGVRKFSATISADAGATAHELMA 309
               +    +  + +    S H +R   A++    G   + L +
Sbjct: 242 WQIMQEIKKQIDIRDCVRFSGHTLRHTYASMQLRNGLDIYTLSS 285


>gi|146296464|ref|YP_001180235.1| phage integrase family protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145410040|gb|ABP67044.1| phage integrase family protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 286

 Score =  112 bits (280), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 45/269 (16%), Positives = 97/269 (36%), Gaps = 23/269 (8%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--------DYRKITTKHIRSGVESRK 127
            EY K+  +     N+  S+    +  +R   D         +  +      +S +  + 
Sbjct: 6   EEYLKTQDFT---ENTIKSYTKDVELFMRWYIDTTGQEFLPENLTEFDLVEYKSYLLRQN 62

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE--GIRPWTKEDMQQFK-S 184
             PS+  + + S+R    + + +  +  +    +++ K  T         K+D+ +F+ +
Sbjct: 63  LRPSTVNRSIISLRKFVHFLLDRGLLKKDISTRLKQVKDTTRNLSPVVLDKKDIYKFRRT 122

Query: 185 FWSEGSQPRLAF-EFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK-TQKTGTIITVELPDG 240
               G    +AF E LL +G+R S++    ++ ++       +K   K  +   V L   
Sbjct: 123 VHQFGKARDIAFVELLLNTGMRISEAINLKLEDIEISERKGKVKIWGKGRSYREVPLNSD 182

Query: 241 ----FMKLLAMTP-IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSAT 295
                 + L   P       F+ +  + +            A  A V+   H +R F A 
Sbjct: 183 ARKYLSEYLKKRPYSETNYLFVTSTGKPLTRNTAYKIILKYAKLASVDLHPHMLRHFFAQ 242

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTK 324
              D G   +++    G + ++    Y K
Sbjct: 243 TLIDKGLNLYDVQQLLGHQRIETTLRYKK 271


>gi|253988429|ref|YP_003039785.1| integrase/recombinase [Photorhabdus asymbiotica subsp. asymbiotica
           ATCC 43949]
 gi|253988435|ref|YP_003039791.1| integrase/recombinase [Photorhabdus asymbiotica subsp. asymbiotica
           ATCC 43949]
 gi|253990473|ref|YP_003041829.1| integrase [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949]
 gi|211638960|emb|CAR67575.1| probable integrase/recombinase [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253779879|emb|CAQ83040.1| putative integrase/recombinase [Photorhabdus asymbiotica]
 gi|253779885|emb|CAQ83046.1| putative integrase/recombinase [Photorhabdus asymbiotica]
 gi|253781923|emb|CAQ85087.1| putative integrase [Photorhabdus asymbiotica]
          Length = 472

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 45/290 (15%), Positives = 103/290 (35%), Gaps = 33/290 (11%)

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYF---DQIIRKSGDFDYRK----ITTKHIRS 121
            TL+  ++ + ++     L+  ++ S+E             G     +    +   + R 
Sbjct: 144 ATLRQHLAAWLEAVRGQGLSERTQESYEERLLPFISWCEARGVMTAPQVSLPLLESYQRW 203

Query: 122 GVESRKH-----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI-RPWT 175
              SRK      +P S    L+ +R  F+W +++ ++  NP  ++  P+ +     +   
Sbjct: 204 LRSSRKANGQPYSPGSQRDRLSVLRQWFRWLLQRHHILYNPTDNMVLPREEKRLPAQVMN 263

Query: 176 KED----MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKT 229
           +++    +         G + R   E L  +G+R  +     +  +     +  ++  K 
Sbjct: 264 EDETHTVLAATDINTPTGLRNRAILEVLWSTGIRRMEVANLLLSEVDFGRGVVLVRQGKG 323

Query: 230 GTIITVELPD----GFMKLLAMTP-----IGKETFFINNDKQKMNATQFSIW----FKAK 276
           G    V + +       + L++ P           FI    + +     +       + +
Sbjct: 324 GKDRVVPIGEQALHWLSRWLSVRPELTRRGDSGHLFITKKGRGLARGTLTQIAADSIRKQ 383

Query: 277 ATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           A  A    + H  R   AT   + GA    + A  G + ++  + YT+ A
Sbjct: 384 AQLAK-PGACHLFRHSMATQMLENGADTRHIQAILGHEKLETTQIYTRVA 432


>gi|254455124|ref|ZP_05068559.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198263534|gb|EDY87806.1| phage integrase [Octadecabacter antarcticus 238]
          Length = 320

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 44/260 (16%), Positives = 83/260 (31%), Gaps = 23/260 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFD--YRKITTKHIRSGVESRKHTPSSAIQFLTSMRV 142
            +L   S+ S      +     G           K+ +  +     +  +  Q +T +  
Sbjct: 39  RNLGPASQSSHLRACKRFAAWLGRSPETATPDDVKYFQQYLIESGVSICTRNQTMTGV-- 96

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202
             K+ +R      +    +   K   +     +K+++++  +      + R+        
Sbjct: 97  --KFLLRVTLRRHDLVAEIFHLKEPVKVPLVLSKKEIKRILAMAPS-LKARVMLSLAYGC 153

Query: 203 GLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMT------------ 248
           G+R  +  R  V  +     I  I   K      V LP   + LL               
Sbjct: 154 GMRAGEVVRLKVGDIDSDQGIIRIVQSKGRKDRIVMLPVDILSLLRDWWKERPTGQDKDV 213

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHE 306
           P  +   F     + ++A Q S  FK  A +AG+ K  + H +R   AT   + G     
Sbjct: 214 PAPERVLFPGYRGKHLSARQISRLFKETAREAGITKPVTLHTLRHSFATHLLERGVDIRV 273

Query: 307 LMATYGWKTVDQAETYTKGA 326
           + A  G   +     Y   A
Sbjct: 274 IQALLGHSKLTTTARYASVA 293


>gi|118592100|ref|ZP_01549494.1| probable site-specific integrase/recombinase [Stappia aggregata IAM
           12614]
 gi|118435396|gb|EAV42043.1| probable site-specific integrase/recombinase [Stappia aggregata IAM
           12614]
          Length = 307

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 42/276 (15%), Positives = 85/276 (30%), Gaps = 31/276 (11%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLTSMR 141
              A N+   +    +      G        ++ I + +     R    +S  + L++++
Sbjct: 18  RGAAENTLAGYRRDLEDFSGFLGRKSLASAQSEDISAYLGDLNRRGFAETSQARRLSALK 77

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----------- 190
             +K+   +     +P  ++  PK++    +  + ED+ +        +           
Sbjct: 78  QFYKFLYAEGTREDDPTRTLSAPKKRASLPKVLSIEDVDRLIETARAETERPRKSATARL 137

Query: 191 ---QPRLAFEFLLYSGLRCSDSCRAGV-QHLQNNIFSIKTQKTGTIITVELPDGFMKLL- 245
              +     E L  +GLR S+     V   L++        K G    V L       + 
Sbjct: 138 RAQRMYTLIEVLYATGLRVSELVALPVTAALRDARLIEIKGKGGKERLVPLSRAAQAAMK 197

Query: 246 -------AMTPIGKETFFINNDK--QKMNATQFSIWFKAKATKAGVNK---SAHGVRKFS 293
                  A     K  +   +      +    F+   K  A  AG++    S H +R   
Sbjct: 198 DYVGLRAAEGAYEKSPWLFPSHGDSGHLTRQHFARELKDLAVAAGLDAGKISPHVLRHAF 257

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           A+     GA    +    G   +   + YT   D  
Sbjct: 258 ASHLLQNGADLRVVQQLLGHADISTTQIYTHVLDER 293


>gi|254520658|ref|ZP_05132714.1| phage integrase [Clostridium sp. 7_2_43FAA]
 gi|226914407|gb|EEH99608.1| phage integrase [Clostridium sp. 7_2_43FAA]
          Length = 400

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 52/310 (16%), Positives = 106/310 (34%), Gaps = 49/310 (15%)

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTK 117
           S   + TT++  I  + +         ++   +   +   I  +        D + +T +
Sbjct: 75  STIDEKTTVQQWIKMWLEEYKMNECRPSTIDRYFGIYRNYIENTNLGVVKLKDLKPLTLQ 134

Query: 118 HIRSGVESRKHTPSSAIQFL-TSMRVLFKWAVRQEYVAINPCLSVERPKRK-TEGIRPWT 175
           +  + +  +K+  +  I+ +   +    + A +++ +  NPCL V  PK K  E +  +T
Sbjct: 135 NYYNELIKKKNKTTDTIKIINKVLSGGMRQAQKEQLILNNPCLFVTLPKSKVKEEVMTFT 194

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII-- 233
            E+ + F +   + S+ R  F   L SGLR  +        +  +   +K  K+   +  
Sbjct: 195 MEEQRIFLNAIED-SRDRCIFNLALGSGLRLGELLALKWSDIDFSSNEVKVSKSVKRVKC 253

Query: 234 -----------------------TVELPDG------------FMKLLAMTP--IGKETFF 256
                                   + LP                + L      I     F
Sbjct: 254 FDENTNTKTKIIEQLPKTRYSERKIPLPKATINELKRHKNIILQEKLMAGDIYIDNNLVF 313

Query: 257 INNDKQKMNATQFSIWFKAKATKAGVNKS-AHGVRKFSATISADAGATAHELMATYGWKT 315
            N     ++A   +  +K+   KA +     H +R   AT   + G +   +    G  +
Sbjct: 314 PNVLGGYIDARNLTKRYKSILNKANIPYRKFHALRHTYATRLFENGVSLKVIQVLLGHSS 373

Query: 316 VD-QAETYTK 324
           +D  A  YT 
Sbjct: 374 MDITANIYTH 383


>gi|157377259|ref|YP_001475859.1| tyrosine recombinase XerC [Shewanella sediminis HAW-EB3]
 gi|157319633|gb|ABV38731.1| tyrosine recombinase XerC [Shewanella sediminis HAW-EB3]
          Length = 301

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 35/271 (12%), Positives = 88/271 (32%), Gaps = 19/271 (7%)

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVESRKHTPSSAI 134
             SA    L+ ++  ++    +++ ++  +     D  +   +   S +  +  +P S  
Sbjct: 12  YLSAE-RQLSKHTVRNYLYELERVSKRLDETTSWLDVTREQLQGALSQIHRQGLSPRSIS 70

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQ 191
             L++++    + + +  +  NP +S+  PK+     +    + +              +
Sbjct: 71  LTLSAIKQFCDFLLAEGAIQANPAMSLSAPKQNKPLPKNMDLDSVTHLLEIDGDDPLSVR 130

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDGFMKLLAMTPI 250
            +   E    SGLR ++     V+ +      +K    G+    V + +  M  +     
Sbjct: 131 DKAIMELFYSSGLRLAELAALDVKDIDFGERQVKVMGKGSKERIVPIGNMAMNAIECWLT 190

Query: 251 -------GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAG 301
                       F+    +++              +  +N     H +R   AT   ++ 
Sbjct: 191 CRKGIVCEDGALFVTGKGKRLAHRSIQARLAKWGQEQALNMRVHPHKLRHSFATHMLESS 250

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           A    +    G   +   + YT   D   L 
Sbjct: 251 ADLRAVQELLGHANLSTTQIYT-SLDFQHLA 280


>gi|218263932|ref|ZP_03477873.1| hypothetical protein PRABACTJOHN_03563 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222401|gb|EEC95051.1| hypothetical protein PRABACTJOHN_03563 [Parabacteroides johnsonii
           DSM 18315]
          Length = 370

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 45/218 (20%), Positives = 77/218 (35%), Gaps = 15/218 (6%)

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
           K   S+A   L  ++ + + A  +  +  N    ++  K  +      T E+++      
Sbjct: 155 KMMASTANNNLNKLKCVLRIAYEERRIKENIAPRLKHAKEDSTRREFLTLEEVRMLAETP 214

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNI-FSIKTQKTGTIITVELPDGF 241
            E    R A  F   +GLR SD  R   +++           I T+KT T   + L D  
Sbjct: 215 CEKPVIRSAALFSCLTGLRISDIIRLQWENIIRGADGGWCMHIVTKKTRTEAVLPLSDEA 274

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
           + L      G+   F     + +  T   ++ K     AG+ K  + HG R   AT+   
Sbjct: 275 LAL--CGERGEGQVF-----KGLTKTILPLYLKDWIKSAGIRKHITFHGFRHTYATLQLA 327

Query: 300 AGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNS 336
           AG   + +        V   + Y     D  R   +  
Sbjct: 328 AGTDLYTISKMLTHSNVGTTQVYVDVVSDLKRKASEQI 365


>gi|83595067|ref|YP_428819.1| tyrosine recombinase XerD subunit [Rhodospirillum rubrum ATCC
           11170]
 gi|83577981|gb|ABC24532.1| tyrosine recombinase XerD subunit [Rhodospirillum rubrum ATCC
           11170]
          Length = 328

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 40/265 (15%), Positives = 80/265 (30%), Gaps = 26/265 (9%)

Query: 89  VNSRISFESYFDQIIRKSGD-FDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWA 147
                    Y   +  K  D     + T +   + + +    P S  + L+ +R    + 
Sbjct: 41  EAYGRDLRDYAAFLREKGLDGLTVSRPTLRAYLATMAAAGLAPRSQARKLSCLRQFHGFL 100

Query: 148 VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-----GSQPRLAFEFLLYS 202
           V +     +P + ++ P+      R  ++ ++              G + R+  E L  +
Sbjct: 101 VSEGRRPDDPTIGLDSPRLGRPLPRVLSEAEVDALLVAAEAGEGARGLRARVLLELLYST 160

Query: 203 GLRCSDSCRAGVQ-HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK 261
           GLR S+     +    ++    +   K      V L       L    I + T    +  
Sbjct: 161 GLRVSELVSLPLSVANRDPETILVRGKGDKERLVPLGLPARAALRDWLIARPTTLPASGA 220

Query: 262 ----------------QKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGA 302
                             +    F+      A +AG++    S H +R   A+     GA
Sbjct: 221 ARRRADRFLFPSSAAEGHLTRDGFAKMLGELALRAGIDPARVSPHVLRHCFASHMLAHGA 280

Query: 303 TAHELMATYGWKTVDQAETYTKGAD 327
               +    G   +   + YT   D
Sbjct: 281 DLRGVQTLLGHADIATTQIYTHVLD 305


>gi|325297633|ref|YP_004257550.1| integrase family protein [Bacteroides salanitronis DSM 18170]
 gi|324317186|gb|ADY35077.1| integrase family protein [Bacteroides salanitronis DSM 18170]
          Length = 368

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 34/263 (12%), Positives = 87/263 (33%), Gaps = 19/263 (7%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHTPSSA 133
           Y +       + ++  ++ +YF   +      +  ++    I   +      +K + S  
Sbjct: 96  YLELLEQKRYSPSTIKTYRAYFSDFVEYHKGRNIDRLKVADINRYILYLVNEKKISVSQQ 155

Query: 134 IQFLTSMRVLFKWAV--RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
              + +++  ++     +++Y        + R K         +K ++++     S   +
Sbjct: 156 NMRINAIKFYYEQVKGGKRQYYG-----GITRAKEYKTVPEVLSKNEIKRILDQLS-NIK 209

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-----ITVELPDGFMKLLA 246
                  +  +GLR S+      + + + + S++    G       ++ +L +   +   
Sbjct: 210 HHCMISLVYSAGLRRSELLNLTPKDINSEMMSVRIMGKGKKCRYSLLSPKLLEELRRYFR 269

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAH--GVRKFSATISADAGATA 304
                K  F      Q  +A+      K  A +AG+    H    R   AT   + G   
Sbjct: 270 EYRPKKWLFEGETPGQPYSASALVKVLKEAAQRAGIKHRVHVHTARHSFATHLLEQGTDL 329

Query: 305 HELMATYGWKTVDQAETYTKGAD 327
           H +    G   +     Y   ++
Sbjct: 330 HTIQELLGHNDIKTTAIYLHTSN 352


>gi|282890174|ref|ZP_06298704.1| hypothetical protein pah_c014o025 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281499831|gb|EFB42120.1| hypothetical protein pah_c014o025 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 329

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 41/250 (16%), Positives = 81/250 (32%), Gaps = 25/250 (10%)

Query: 100 DQIIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAIN 156
           +++           IT K IR  +           + ++ L+S+R  FK+ + Q++++ N
Sbjct: 63  ERLKTYDAALVLDTITRKTIRGFLAHLSDNQVHKRTVVRRLSSLRTFFKYTLAQKWISAN 122

Query: 157 PCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRA 212
           P   +E P+ + +     + + +Q            G + R+  E    SGLR S+    
Sbjct: 123 PTEELESPRVEKKVPNSLSYDQVQTLFDQPDTKTFLGFRDRVIMELFYSSGLRVSELVAL 182

Query: 213 GVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAM---------------TPIGKETFF 256
             Q     N+      K      V +       +                         F
Sbjct: 183 DRQEFDPKNLLIKLKGKGKKERIVPITKNAADWINAYLTHPERCVEIDGHFAQQDSNAIF 242

Query: 257 INNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWK 314
           +N    ++        F    T +G+    + H +R   AT   + G     +    G  
Sbjct: 243 LNRLGTRLTTRSVDRKFDKYLTASGLIGKVTPHTIRHTIATHWLENGMDLKTIQMILGHI 302

Query: 315 TVDQAETYTK 324
           ++     YT+
Sbjct: 303 SLATTTIYTQ 312


>gi|189499195|ref|YP_001958665.1| integrase family protein [Chlorobium phaeobacteroides BS1]
 gi|189494636|gb|ACE03184.1| integrase family protein [Chlorobium phaeobacteroides BS1]
          Length = 384

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 47/287 (16%), Positives = 92/287 (32%), Gaps = 24/287 (8%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD-----YRKITTKHIRSGVESR 126
           K L   Y K+            ++ S    + R           +R+I         +  
Sbjct: 95  KALFLSYFKAEAEKKSKPGYPGNWGSTLKHLTRFVEKHRSVRVTFREIDKAFCEGFKDYL 154

Query: 127 KHTPSS-AIQFLTSMRVLFKW---------AVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
           +   ++   + L+S      +         A++   ++++P   V RPK  +      T 
Sbjct: 155 RDEATTRTGKGLSSASQGAYYGKFKACLNKAIKDGILSVDPAKGVARPKIVSHKREYLTF 214

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGV---QHLQNNI-FSIKTQKTGTI 232
           +++Q            +  F F   +GLR SD  +      +   +        QKT  +
Sbjct: 215 DELQAMAKAECRNPTLKRMFLFSCLTGLRFSDCHKLIWGEVEQYGDGWRIVFHQQKTKGL 274

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290
              ++     +L+       +  F    K    +   SI  +    KAG+ K  + H  R
Sbjct: 275 QYHDISQQARELMGEQGAADDRVFFAISK---YSAYLSIVLREWVLKAGITKHLTFHSGR 331

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
              A +  + G   + L    G + ++    Y    D+ R      R
Sbjct: 332 HTFAVLQLENGTDIYTLSKLLGHREIEVTAIYADILDKKRREAMTER 378


>gi|315640716|ref|ZP_07895818.1| tyrosine recombinase XerC [Enterococcus italicus DSM 15952]
 gi|315483471|gb|EFU73965.1| tyrosine recombinase XerC [Enterococcus italicus DSM 15952]
          Length = 310

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 41/265 (15%), Positives = 95/265 (35%), Gaps = 25/265 (9%)

Query: 85  GSLAVNSRISFESYF---DQIIRKSGDFDYRKITTKHIR---SGVESRKHTPSSAIQFLT 138
              +  ++ ++   F      + +SG  D+  I  + +R   S +  ++++ +S  + + 
Sbjct: 29  RGYSEKTQAAYAEDFFQFLDFLEQSGSRDFLAIDYRDVRIYLSFLNDQEYSRNSISRKVA 88

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KSFWSEGSQPRL 194
           S+R  +++ +++  +  NP   V   K+  +  R + ++++QQ     K       +   
Sbjct: 89  SLRSFYQYLLKRMVLTENPFAYVHLKKKNQKLPRFFYEDELQQLFDSVKGTEPLEQRNLA 148

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPD------------GF 241
             E L   GLR S+     +  +   +   +   K      V   +            G 
Sbjct: 149 LLEILYGCGLRVSECAAITLTSIDWEHQILLVYGKGSKERIVPFNEHANKAMSHYIQNGR 208

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISAD 299
            +LL       +  F+N+    + AT           ++ ++     H +R   AT   +
Sbjct: 209 KELLTQFKKEHDYLFVNHLGSPVTATGIEYILNQLLKRSQLDSEIHPHKLRHTFATHLLN 268

Query: 300 AGATAHELMATYGWKTVDQAETYTK 324
            GA    +    G   +   + Y  
Sbjct: 269 NGADMRTVQELLGHANLSTTQIYAH 293


>gi|227529183|ref|ZP_03959232.1| site-specific DNA tyrosine recombinase, XerD [Lactobacillus
           vaginalis ATCC 49540]
 gi|227350908|gb|EEJ41199.1| site-specific DNA tyrosine recombinase, XerD [Lactobacillus
           vaginalis ATCC 49540]
          Length = 292

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 42/275 (15%), Positives = 105/275 (38%), Gaps = 23/275 (8%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGVESR 126
           T+   I  Y  +      + N+R S+    ++       SG   ++++    + + +   
Sbjct: 4   TIDHFID-YLMTQ--KGRSQNTRESYRHDLERCAAFFTASGINTWQEVDQYAVINVIAEM 60

Query: 127 KHTPSS---AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT-EGIRPWTKEDMQQF 182
           K    +     + ++S+R L+++ +R+  V +NP   ++  +  T +     ++++++Q 
Sbjct: 61  KREDRASTTINRTISSLRQLYRYLLRRHEVQVNPMDYIDLEEVATRKAPVTLSQQEIEQL 120

Query: 183 KSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVEL 237
            +        G + R   E +  +G+  S+        +  ++  ++          V L
Sbjct: 121 FAIPDTTTVNGLRDRTLLELMYGTGMLVSELINLKRSQVHFDLQILQLQDNPRHQRIVPL 180

Query: 238 ----PDGFMKLLAMTPIG-KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290
                +   + L  T     +  F+N    +M        FK    K+G++K  +   +R
Sbjct: 181 GKIAKEWLARYLRATAGDSSDYVFLNARGGQMTRQGVWKNFKEIVRKSGLSKKITLQTLR 240

Query: 291 KFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
                     GA+   +    G +T  ++ E+Y +
Sbjct: 241 HTFTADLLKNGASWQAVQTLLGRETGRESFESYIR 275


>gi|254283616|ref|ZP_04958584.1| phage integrase family protein [gamma proteobacterium NOR51-B]
 gi|219679819|gb|EED36168.1| phage integrase family protein [gamma proteobacterium NOR51-B]
          Length = 355

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 40/289 (13%), Positives = 93/289 (32%), Gaps = 18/289 (6%)

Query: 49  SALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD 108
           +A+      +      +  P T     +E     H        +   + +  ++  + G 
Sbjct: 49  AAIALGADPQADARQRKAVP-TWNAFFTESYL-PHAKQAKRTWKNDADMHRLRLGPRFGA 106

Query: 109 FDYRKITTKHIRSGVESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165
               +IT + ++      +     P++A   L  +R     AV    + +NP   V++  
Sbjct: 107 TPINRITRQEVQQFHNELREDGLAPATADHHLKLLRHALNLAVDWGMLQVNPAAKVKQFN 166

Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGS-QPRLAFEF-LLYSGLRCSDSCRAGVQHLQNNIFS 223
            +    R  + E+ ++      +   +P       LL +G R  ++  A    +  +   
Sbjct: 167 SENLVERYLSDEEFKRLMRVLRDHENRPMACIVLWLLATGARSGEAKAATWDDIARDQTV 226

Query: 224 IKTQ----KTGTIITVELPDGFMKLL---AMTPIGKETFFINNDKQKMNATQFSIWFKAK 276
              +    K+     V L D    +L     +       F+            S  ++  
Sbjct: 227 WTIRSEHSKSKKRRAVPLNDIARSVLQEIRASGCTSGHLFVGKRGP---YKYLSKNWERI 283

Query: 277 ATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             +A +     H +R   A++  ++G + +E+    G         Y+ 
Sbjct: 284 CEEADLQGLRLHDLRHNYASMLVNSGHSLYEVQQALGHSDPKVTMRYSH 332


>gi|300705544|ref|YP_003747147.1| site-specific tyrosine recombinase [Ralstonia solanacearum
           CFBP2957]
 gi|299073208|emb|CBJ44566.1| site-specific tyrosine recombinase [Ralstonia solanacearum
           CFBP2957]
          Length = 329

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 53/290 (18%), Positives = 93/290 (32%), Gaps = 42/290 (14%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF----DYRKITTKHIRSGVESR--- 126
           I+ Y     +   L+ ++  ++      + R    F    D  ++   HIRS +      
Sbjct: 20  IAAYLDVLKFERQLSPHTLENYTRELAVLQRLGARFAAGVDLTRLLPHHIRSMIAHLHGN 79

Query: 127 KHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQ 181
             +  S  + L+  R  +KW A+R+  V  NP   V  PK      +  + E     M+Q
Sbjct: 80  GLSGRSIARALSVWRGWYKWLALREAAVTANPVDGVRAPKSPKRLPKALSVEQAVALMEQ 139

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN------------IFSIKTQKT 229
                 E  + R   E     GLR S+     ++H++                 +   K 
Sbjct: 140 LPGDDPETVRDRAVNELFYSCGLRLSELVGLDLRHVKAGDYASAGWLDLEAREVMVLGKG 199

Query: 230 GTIITVEL--------------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKA 275
               TV +                   +     P      F++   +++   Q  I  K 
Sbjct: 200 NKYRTVPVGSKAAEALAAWLAVRPQLAR-PDAAPEDAHALFLSARGKRLTQRQIQIRMKR 258

Query: 276 KATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
            A  AGV      H +R   AT    +      +    G  ++   + YT
Sbjct: 259 NAIAAGVPADVHPHVLRHSFATHMLQSSGDLRAVQELLGHASIASTQVYT 308


>gi|251778719|ref|ZP_04821639.1| phage integrase family protein [Clostridium botulinum E1 str. 'BoNT
           E Beluga']
 gi|243083034|gb|EES48924.1| phage integrase family protein [Clostridium botulinum E1 str. 'BoNT
           E Beluga']
          Length = 380

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 41/375 (10%), Positives = 122/375 (32%), Gaps = 45/375 (12%)

Query: 15  RTRHGKIIYYFRKGH--GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           R R     YYF  G   G+R ++     +T   A  +  +         +  ++   +  
Sbjct: 6   RKRGSSWYYYFEAGKINGKRNKIERKGGNTKKEALAALRSALNELSSTGSCVQETNMSFS 65

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
             +  +       +   N++ +++++ +  +    G +  +++    ++  +  +     
Sbjct: 66  DYLDYWFNEYVMKNCKYNTQQTYKTFININLKPNLGIYKLKQLNYAGLQEFLNKQYAHGY 125

Query: 132 SAIQFLTSMRVLFKWAVRQ-----EYVAINPC--LSVERPKRKTEGIRPWTKEDMQQFKS 184
           S    L  +R +   ++       + + +NP   L++ R    ++     + E+  +   
Sbjct: 126 SKN-TLARLRSIITHSLEMAVFPYDLIKVNPAQYLTIPRFDNISKKNIVISIENFNKITE 184

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK---------------- 228
            +  G+   +  +    +G+R  + C      +     +IK +K                
Sbjct: 185 RFPCGTSFYIPLQIAFNTGMRVGEVCGLTWDCVDFENKTIKVEKILIFKTKQGYEFSTPK 244

Query: 229 -TGTIITVELPDGFMKLLAMTP--------------IGKETFFINNDKQKMNATQFSIWF 273
              +I T+ + D  + +L                            +   +  T      
Sbjct: 245 TKKSIRTISIGDTLINILKAHKKWQEQNKQEYGEYYNDNNFVCTKENGSFVTMTSLRYLS 304

Query: 274 KAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLG 332
           K    +  +  + H +R   AT+  + GA   ++    G  ++      Y+   +  ++ 
Sbjct: 305 KIVNMELQIEFNFHSLRHTHATMLLEGGANIKDIQDRLGHSSLSTTMNIYSHVTN--KMK 362

Query: 333 IKNSRRISSVVDSDD 347
                 + +++++  
Sbjct: 363 NDTVNILENMINNKK 377


>gi|303232711|ref|ZP_07319396.1| phage integrase, N-terminal SAM domain protein [Atopobium vaginae
           PB189-T1-4]
 gi|302481197|gb|EFL44272.1| phage integrase, N-terminal SAM domain protein [Atopobium vaginae
           PB189-T1-4]
          Length = 324

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 32/292 (10%), Positives = 89/292 (30%), Gaps = 42/292 (14%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYR---KITTKHIRSGV---ESRK 127
           I EY +   +  + + N+  ++    +       D        IT + +   +    +  
Sbjct: 7   IDEYLRYIRFERNFSANTLEAYARDLNAYCEFLTDKHIDTPVHITRRVVEEYLSYVATLD 66

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK---- 183
             PSS  + +++++   ++ V ++    +P   +  PK+     +  +  ++++      
Sbjct: 67  KAPSSVQRCVSAIKSFHRFMVIEQICTAHPTADIALPKKPALLPQVLSHTEVERLLDEPF 126

Query: 184 ------SFWSEGS------------QPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFS 223
                 +  +               + +   E L   GLR S+ C     ++   + +  
Sbjct: 127 LQELQPAAHTTKQGTTTMTKAACFWRDKAILELLYGCGLRVSELCNLTCDNVSRTDEVLR 186

Query: 224 IKTQKTGTIITVELPDGFMKL----------LAMTPIGKETFFINNDKQKMNATQFSIWF 273
           +  + +   +   +                 L          F++     ++        
Sbjct: 187 VIGKGSKERVVPLIGSALAAYTRYVDTWRAELYNPRRSNHAVFLSVRGSAISRQAVFALV 246

Query: 274 KAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +      G+     H +R   AT   + G     +    G  ++   + YT 
Sbjct: 247 EKYGRMVGIRGLHPHTLRHTYATHLLEGGMDLRIVQELLGHASIATTQLYTH 298


>gi|255975766|ref|ZP_05426352.1| phage integrase [Enterococcus faecalis T2]
 gi|307277985|ref|ZP_07559069.1| tyrosine recombinase XerC [Enterococcus faecalis TX0860]
 gi|312899495|ref|ZP_07758825.1| tyrosine recombinase XerC [Enterococcus faecalis TX0470]
 gi|255968638|gb|EET99260.1| phage integrase [Enterococcus faecalis T2]
 gi|306505382|gb|EFM74568.1| tyrosine recombinase XerC [Enterococcus faecalis TX0860]
 gi|311293365|gb|EFQ71921.1| tyrosine recombinase XerC [Enterococcus faecalis TX0470]
          Length = 299

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 39/267 (14%), Positives = 96/267 (35%), Gaps = 29/267 (10%)

Query: 85  GSLAVNSRISFE---SYFDQIIRKSGDFDY---RKITTKHIRSGVESRKHTPSSAIQFLT 138
              +  ++ +++    +F   ++ SG+ +Y     +  +   S +  ++++ +S  + + 
Sbjct: 18  RGYSEKTKKAYQEDIQHFFSFLKTSGNDNYLTVEHLDVRAYLSELYDQEYSRNSISRKIA 77

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FWSEGSQPRL 194
           S+R  +++ ++ E +  NP   V   K++    R + +++M               + + 
Sbjct: 78  SLRSFYQFLLKNEAIQENPFSYVHMKKKQLRLPRFFYEKEMDALFESAQGEHPLDLRNQA 137

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-ITVE------------LPDGF 241
             E L  +G+R S+     V  +      +     G     V             L +G 
Sbjct: 138 LLEVLYGTGIRVSECANLTVDAVDFQASVLLVHGKGNKDRYVPFGSFAQDALKDYLENGR 197

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQ----FSIWFKAKATKAGVNKSAHGVRKFSATIS 297
             L+          F+N+  +++  T      +   K  +  A ++   H +R   AT  
Sbjct: 198 ALLMTKYQKKHPYVFVNHHGEQITPTGIEYVLNQLIKKSSLNAEIH--PHMLRHTFATHL 255

Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324
            + GA    +    G   +   + Y  
Sbjct: 256 LNNGADMRTVQELLGHANLSTTQIYAH 282


>gi|53717850|ref|YP_106836.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei
           K96243]
 gi|76808989|ref|YP_331806.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei
           1710b]
 gi|126451479|ref|YP_001064490.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei
           1106a]
 gi|134283593|ref|ZP_01770292.1| tyrosine recombinase XerC [Burkholderia pseudomallei 305]
 gi|167736614|ref|ZP_02409388.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei
           14]
 gi|167813712|ref|ZP_02445392.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei
           91]
 gi|167822227|ref|ZP_02453698.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei
           9]
 gi|167843822|ref|ZP_02469330.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei
           B7210]
 gi|167909037|ref|ZP_02496128.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei
           112]
 gi|226199796|ref|ZP_03795347.1| tyrosine recombinase XerC [Burkholderia pseudomallei Pakistan 9]
 gi|242316661|ref|ZP_04815677.1| tyrosine recombinase XerC [Burkholderia pseudomallei 1106b]
 gi|254182208|ref|ZP_04888805.1| tyrosine recombinase XerC [Burkholderia pseudomallei 1655]
 gi|254188137|ref|ZP_04894649.1| tyrosine recombinase XerC [Burkholderia pseudomallei Pasteur 52237]
 gi|254196193|ref|ZP_04902617.1| tyrosine recombinase XerC [Burkholderia pseudomallei S13]
 gi|254261174|ref|ZP_04952228.1| tyrosine recombinase XerC [Burkholderia pseudomallei 1710a]
 gi|254295751|ref|ZP_04963208.1| tyrosine recombinase XerC [Burkholderia pseudomallei 406e]
 gi|52208264|emb|CAH34195.1| integrase/recombinase [Burkholderia pseudomallei K96243]
 gi|76578442|gb|ABA47917.1| tyrosine recombinase XerC [Burkholderia pseudomallei 1710b]
 gi|126225121|gb|ABN88661.1| tyrosine recombinase XerC [Burkholderia pseudomallei 1106a]
 gi|134245002|gb|EBA45097.1| tyrosine recombinase XerC [Burkholderia pseudomallei 305]
 gi|157806287|gb|EDO83457.1| tyrosine recombinase XerC [Burkholderia pseudomallei 406e]
 gi|157935817|gb|EDO91487.1| tyrosine recombinase XerC [Burkholderia pseudomallei Pasteur 52237]
 gi|169652936|gb|EDS85629.1| tyrosine recombinase XerC [Burkholderia pseudomallei S13]
 gi|184212746|gb|EDU09789.1| tyrosine recombinase XerC [Burkholderia pseudomallei 1655]
 gi|225928147|gb|EEH24183.1| tyrosine recombinase XerC [Burkholderia pseudomallei Pakistan 9]
 gi|242139900|gb|EES26302.1| tyrosine recombinase XerC [Burkholderia pseudomallei 1106b]
 gi|254219863|gb|EET09247.1| tyrosine recombinase XerC [Burkholderia pseudomallei 1710a]
          Length = 310

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 44/279 (15%), Positives = 93/279 (33%), Gaps = 30/279 (10%)

Query: 75  ISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTP 130
           I +Y  +  H   L+ ++  ++    D++ + +       +T   +RS V        + 
Sbjct: 10  IVDYLSNLRHVRKLSDHTLRAYAHELDELKKLANGRPLDSLTAVDMRSAVARAHAGGLSA 69

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
            S    L++ R  ++W  +   +  NP  +V  PKR     +  + +D        + G+
Sbjct: 70  RSISHRLSAWRAFYRWFSQHVEMNANPVAAVRAPKRAKTLPKALSVDDTAALMDAPTAGT 129

Query: 191 ----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS------------IKTQKTGTIIT 234
               +     E    SGLR ++     ++++++  +                 K      
Sbjct: 130 AESLRDHAILELFYSSGLRLAELIGLDIEYVKDGAYRSAGWLDLAEAEVTVRGKGDKERK 189

Query: 235 VEL----PDGFMKLLAM----TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284
           V +     D     LA+            F++    +M+        K  A  AG+    
Sbjct: 190 VPVGRKALDALHAWLAVRGEFVKHDPRPLFLSVRGNRMSPGVVRERVKRAALAAGIPANV 249

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
             H +R   AT    +      +    G  ++   + YT
Sbjct: 250 HPHVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYT 288


>gi|332177003|gb|AEE12693.1| Tyrosine recombinase xerC [Porphyromonas asaccharolytica DSM 20707]
          Length = 407

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 52/300 (17%), Positives = 108/300 (36%), Gaps = 22/300 (7%)

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRI----SF-ESYFDQIIRKSGDFDYRKITTKHIRSG 122
             TL+  I   R   +   L +N+      S+ E   +    +    D  +   ++    
Sbjct: 11  EQTLEAFIEYLRLERNASPLTLNTYRPAITSYMECALELASDEWQPSDADRDLVRNWIMQ 70

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
               + T ++  + L++++  +K+   +  V  NP   +  PKR+       T+  +++ 
Sbjct: 71  QMDDELTSTTVNKNLSAVKSFYKYLQLRGVVDNNPTRYLRGPKREHTLPSFLTQAQIEEA 130

Query: 183 KSFWS------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITV 235
                         + RL  E +  +GLR ++      Q +     S++    G     V
Sbjct: 131 LETIPTDPEDFLAVRNRLIIETIYQTGLRRAEVASLETQQVDLASMSLRVVGKGRKERIV 190

Query: 236 ELPDGFMKLLAMTPIGKE-------TFFINNDKQKMN-ATQFSIWFKAKATKAGVNKS-A 286
              +   + +      KE        FF+    + ++ A  + +  KA     G+ +  A
Sbjct: 191 PFGEALKEQMKAYLTLKEQKVGQSRYFFVTLKCRPLSGADVYQVVHKALDIVPGLPRRGA 250

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSRRISSVVDS 345
           H +R   AT   +AGA    +    G   ++    YT  + ++++       R  S V S
Sbjct: 251 HTLRHSFATEMLNAGAPITSIKELLGHSNLETTTRYTHTSFEQLKQLYHAHPRAQSQVPS 310


>gi|196230590|ref|ZP_03129452.1| integrase family protein [Chthoniobacter flavus Ellin428]
 gi|196225520|gb|EDY20028.1| integrase family protein [Chthoniobacter flavus Ellin428]
          Length = 315

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 41/245 (16%), Positives = 87/245 (35%), Gaps = 18/245 (7%)

Query: 110 DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
           +          +  +    + +S    + ++++ F+W   ++ +  +    +  P+ +  
Sbjct: 66  EVTHQQITDYLAHKKRLGLSAASIKLIVVALKIFFRWLHARKRIERDVAEVLPLPRTERY 125

Query: 170 GIRPWTKEDMQQFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSI 224
                 +  + +           G + R   E L  SGLR S+   A +++L  +     
Sbjct: 126 LPETMNELQVDRLLEGISIDAPRGLRDRALLELLYASGLRVSELVNARLENLDLDARIIR 185

Query: 225 KTQKTGTIITVELPDGFMKLLAMTP-------IGKET---FFINNDKQKMNATQFSIWFK 274
            T K   +  V +       +           +GK+T    F+++   K+   +     K
Sbjct: 186 VTGKGNKMRLVPVGQKACDAIRAYLEKERPEMVGKKTGSEVFLSSRGTKLTTVRIWQIVK 245

Query: 275 AKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           A A  AG++ +   H +R   AT     GA    +    G   +   + YT   D+ RL 
Sbjct: 246 ACAKNAGLDINVYPHLLRHSFATHLLSNGADLRIIQEMLGHADISTTQIYTH-VDQQRLK 304

Query: 333 IKNSR 337
             + R
Sbjct: 305 AVHHR 309


>gi|163788404|ref|ZP_02182850.1| tyrosine type site-specific recombinase [Flavobacteriales bacterium
           ALC-1]
 gi|159876724|gb|EDP70782.1| tyrosine type site-specific recombinase [Flavobacteriales bacterium
           ALC-1]
          Length = 376

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 43/272 (15%), Positives = 87/272 (31%), Gaps = 11/272 (4%)

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122
             R  P   +   + Y         A N+  S+   F+  I      +  +I    +R+ 
Sbjct: 95  RQRSLPENFRHCPTSYLDKLQLKKYANNTVKSYILAFETFINYHKAKELIQINENDVRNY 154

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           +        S      ++  + K+         N    +ERP++  +  +  +KED+ + 
Sbjct: 155 ILKLIQENKSDSYINIAINSI-KFYYESVLGMPNRFYQIERPRKAKKLPKVLSKEDVLKV 213

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIITV--E 236
            +  +   + +     L  SG+R ++     +  + +    I+      K      +   
Sbjct: 214 ITN-TNNLKHKCIVSLLYSSGIRRNELIHLKISDIDSKRMLIRIDAAKGKKDRYTLLSHA 272

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA--GVNKSAHGVRKFSA 294
           L              K   F     ++ +A       K  A KA   +  + H +R   A
Sbjct: 273 LLKDLRDYYKQWKPEK-YIFEGLYGKQYSAQSVGQIVKNAAIKARIQITVTPHMLRHSFA 331

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGA 326
           T   + G    ++    G  +    E YT  A
Sbjct: 332 THLLEDGVDIRQIQVLLGHSSTKTTEIYTHVA 363


>gi|237708280|ref|ZP_04538761.1| tyrosine type site-specific recombinase [Bacteroides sp. 9_1_42FAA]
 gi|229457833|gb|EEO63554.1| tyrosine type site-specific recombinase [Bacteroides sp. 9_1_42FAA]
          Length = 376

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 57/297 (19%), Positives = 101/297 (34%), Gaps = 21/297 (7%)

Query: 40  ESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF 99
           E+ FI    SAL  + PK+    SP   P         Y ++      + ++  ++ +YF
Sbjct: 70  ETAFID--YSALKNTQPKKSGKTSPAIPPG--------YAETLRQLRYSEHTVRAYTAYF 119

Query: 100 DQIIRKSGDFDYRKITTKHIRSGVESRKHTP--SSAIQFLTSMRVLFKWAVRQEYVAINP 157
            +  +     + R I  + I + +     T   SS  Q L    + F +           
Sbjct: 120 KEFQQYFAGRNLRYIRPEEINAYIVHLIDTRGISSCQQNLRINSIKFYFEKVLGLERK-- 177

Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217
           C  V+R KR+       +KE+++          +    F  L  +GLR S+        +
Sbjct: 178 CYEVKRAKRERTLPDVLSKEEIKSILDATGPDIRLFCMFSLLYSAGLRISELLDLKPHDI 237

Query: 218 Q--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPI---GKETFFINNDKQKMNATQFSIW 272
               ++  ++  K        L    ++ L         +E  F     +    +  S  
Sbjct: 238 NVSRSLIRVRQGKGRKDRYTLLSKPLVRKLTEYTKLYKPQEWLFERYKGEPFTESIVSKK 297

Query: 273 FKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
            K  A +AG+ K    H +R   AT   + G     +    G   +   E Y   AD
Sbjct: 298 LKEAAKEAGITKRVYPHLLRHSFATHLIEQGTDLKIVKELLGHNQLKTTEMYVHIAD 354


>gi|189485678|ref|YP_001956619.1| tyrosine recombinase XerC [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
 gi|170287637|dbj|BAG14158.1| tyrosine recombinase XerC [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
          Length = 314

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 38/264 (14%), Positives = 93/264 (35%), Gaps = 29/264 (10%)

Query: 85  GSLAVNSRISFESYFD--QIIRKSGDFDYRKITTKHIRSGVES---RKHTPSSAIQFLTS 139
            + + ++  +++       +  +    ++     + IR  +E    +K + ++  + L  
Sbjct: 38  RNFSAHTLRAYKRDISDFALFLQKKRLNFSHAGKRDIREFLEELGNKKLSRATLARKLAV 97

Query: 140 MRVLFKWAVRQEYVAIN-----PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
           +   +K+ +  + +  N     P       K+  +     T+ +MQ   +      + R 
Sbjct: 98  LHSFYKFLIINKIIKENFIESMPAS----LKKDKKVPSFLTENEMQMLLNLPDLKPRDRA 153

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLA------ 246
             E     GLR  +     ++++   +N+ ++  ++    I V + D  +  +       
Sbjct: 154 MIELFYSCGLRIEELVSLDLKNIDFISNVVTVTGKRNKERI-VPVGDICLHAIKDYINKR 212

Query: 247 ---MTPIG-KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
                P   +   F+++  +++              KAG  K  S H +R   AT   D 
Sbjct: 213 RNLGLPYDIRSPVFLSDRAKRLGQRTARRILHRYFVKAGFTKKVSPHTLRHTFATHILDR 272

Query: 301 GATAHELMATYGWKTVDQAETYTK 324
           G     +    G K +   + YT 
Sbjct: 273 GCDLRSVQEMLGHKNLSSTQIYTH 296


>gi|116747518|ref|YP_844205.1| phage integrase family protein [Syntrophobacter fumaroxidans MPOB]
 gi|189030087|sp|A0LEB8|XERC_SYNFM RecName: Full=Tyrosine recombinase xerC
 gi|116696582|gb|ABK15770.1| phage integrase family protein [Syntrophobacter fumaroxidans MPOB]
          Length = 328

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 43/272 (15%), Positives = 90/272 (33%), Gaps = 32/272 (11%)

Query: 85  GSLAVNSRISFESYFDQIIRK------SGDFDYRKITTKHIRSGVESRKHTP--SSAIQF 136
             L+  +  ++    DQ          + D    ++    IR  + +   T   +S  + 
Sbjct: 33  RGLSAETVRAYAGDLDQFREHMNATAGTADPRLSQVDADAIRGYLAALHKTRKKTSRARK 92

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS------ 190
           L+++R  + +   +E V  NP   V  PK  T+       +D+       + G+      
Sbjct: 93  LSTLRSFYHFLNDRELVRENPAALVAYPKLGTKIPSFLGVDDVFHLLDSLNAGAARAGAS 152

Query: 191 ----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVEL----PDGF 241
               +    FE +  +G+R S+        +  +   ++   K      V +     D  
Sbjct: 153 WRRCRNWALFECMYSTGVRVSELAGMDESDVDFHEGMVRVLGKGSKERIVPVGGKALDAV 212

Query: 242 MKLLAMTPIG-------KETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKF 292
              L +               F N   +++         + +  + G+  + S HG+R  
Sbjct: 213 KLYLRVLDSQFPEARRMGSALFRNARGRRLTTRSVHRLLRMELRRCGLWQHLSPHGLRHT 272

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324
            AT   ++GA    +    G   +   + YT 
Sbjct: 273 FATHLLNSGADLRAIQEMLGHSNLSTTQRYTH 304


>gi|115353184|ref|YP_775023.1| site-specific tyrosine recombinase XerC [Burkholderia ambifaria
           AMMD]
 gi|115283172|gb|ABI88689.1| tyrosine recombinase XerC [Burkholderia ambifaria AMMD]
          Length = 306

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 45/280 (16%), Positives = 89/280 (31%), Gaps = 32/280 (11%)

Query: 75  ISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTP 130
           I+ Y  +  H   L+ ++  ++    D++ + +       +T   +R  V        + 
Sbjct: 6   IAAYLSNLKHVRQLSEHTLRAYSHELDELKKLAAGRPLDTLTAVDMRGAVARAHAGGLSA 65

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFW 186
            S    L++ R  ++W  +   +  NP  +V  PKR     +  + +D    M    +  
Sbjct: 66  RSISHRLSAWRAFYRWLAQHIEMPANPVAAVRAPKRPKTLPKALSVDDASALMDAPLAGT 125

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRA-------------GVQHLQNNIFSIKTQKTGTII 233
           +EG +     E    SGLR ++                 G   L     +++  K     
Sbjct: 126 TEGIRDHAILELFYSSGLRLAELVGLDVRYTQADGYRSAGWLDLAEAEVTVR-GKGNKER 184

Query: 234 TVELPDGFMKLLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284
            V +    +  L                  F++    +M         K  A  AG+   
Sbjct: 185 KVPVGRKAIDALNAWLAVRGEFVKHDPHPLFVSVRGNRMAPGVVRERVKRAALAAGIPAN 244

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
              H +R   AT    +      +    G  ++   + YT
Sbjct: 245 VHPHVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYT 284


>gi|218461906|ref|ZP_03501997.1| phage integrase [Rhizobium etli Kim 5]
          Length = 383

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 45/311 (14%), Positives = 92/311 (29%), Gaps = 17/311 (5%)

Query: 52  TGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFD 110
                     +  ++  TTL+ L   +        +   +   +E    + II   G   
Sbjct: 62  AAGKDPASERDHRKQAVTTLRELCERFLADYAETHVKAKTAKDYEQLIRKLIIPALGRHG 121

Query: 111 YRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA--INPCLSVERPKRKT 168
              +    I       +  P    + L  +  +F  A +        NPC  V + +   
Sbjct: 122 IADLKRSDISQFHHDLRDRPYLGNRALAVLSKMFNLAEQWGLRDDNTNPCRHVPKFRESK 181

Query: 169 EGIRPWTKEDMQQFKSFWSEG-------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-- 219
              R  T  ++++     ++             A   L+ +G R S+  +   +H+    
Sbjct: 182 RE-RYLTNGELKRLGEVLAQAETSNTESPHMIAAIRLLILTGARLSEITKLQWEHVDLEH 240

Query: 220 NIFSIKTQKTGTIITVELPDGFMKLLAMTPI--GKETFFINNDKQKMNATQFSIWFKAKA 277
            +  +   KTG    + L D  + +L   P   G     +     +        W + + 
Sbjct: 241 GLLRLPDSKTGKK-DIVLNDAALDVLKKLPRASGNPYVIVGGRSGQHLVNVKGPWGRLRK 299

Query: 278 TKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNS 336
                +   H +R   A+++A  G +   +    G         Y     D +R      
Sbjct: 300 KAGLDDLRIHDLRHSFASVAAGMGESLPIIGKLLGHTQTQTTARYAHLQMDPLRAASNAI 359

Query: 337 RRISSVVDSDD 347
               S   + D
Sbjct: 360 GAAVSSAMNPD 370


>gi|89091916|ref|ZP_01164871.1| tyrosine recombinase [Oceanospirillum sp. MED92]
 gi|89083651|gb|EAR62868.1| tyrosine recombinase [Oceanospirillum sp. MED92]
          Length = 299

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 30/260 (11%), Positives = 86/260 (33%), Gaps = 20/260 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGD------FDYRKITTKHIRSGVESRKHTPSSAIQFLT 138
             L+ ++  ++    ++    + +              +   + +  +     S  + L+
Sbjct: 17  RQLSPHTLDNYTRDINRFFDFTEEQGIPAWSSVTAKQVRQFAAQIHRQGLAGKSIQRSLS 76

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS---FWSEGSQPRLA 195
           ++R  F++  R+  V  NP  +V+ PK + +       + + +        +  ++    
Sbjct: 77  ALRSFFRFLSREGVVDQNPADAVQAPKSQRKLPETLDVDQIDRLLDIPVKDAVSARDSAI 136

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM------- 247
            E +  SGLR S+     +  L     S++   K      + +    ++ +         
Sbjct: 137 MELIYSSGLRISELVGLDIHSLDLADHSLRVLGKGNKQRELPIGRKALQAIDRWLDYRHE 196

Query: 248 -TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATA 304
                +   F+++  ++++                VN     H +R   A+   ++    
Sbjct: 197 LASFDENALFVSSRGKRISVRTVQQRMYHWGKYLEVNGHVHPHRLRHSFASHMLESSGDL 256

Query: 305 HELMATYGWKTVDQAETYTK 324
             +    G + +   + YT 
Sbjct: 257 RAVQELLGHEDISTTQIYTH 276


>gi|330964222|gb|EGH64482.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 290

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 36/259 (13%), Positives = 92/259 (35%), Gaps = 19/259 (7%)

Query: 85  GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIR---SGVESRKHTPSSAIQFLT 138
             ++ ++  ++     ++    +K+    +  +  +H+R   +    +  +  S  + L+
Sbjct: 7   RQVSPHTLEAYRRDLSKVLAYCQKAQLSSWNDLDIQHLRSFTARQHQQGQSSRSLARMLS 66

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRL 194
           ++R  +K+  R+     +P   +  PK +    +    +   Q      E      + + 
Sbjct: 67  AVRGFYKYLNREGLCQHDPANGLSPPKGERRLPKTLDTDRTAQLLDGGVEDDFLAHRDQA 126

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV--------ELPDGFMKLLA 246
             E L  SGLR S+     +  L      ++    G+   V        +  + ++ L A
Sbjct: 127 IMELLYSSGLRLSELTGLNLDQLDLRDGLVQVLGKGSKTRVLPVGSKARQALETWLPLRA 186

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAK-ATKAGVNKSAHGVRKFSATISADAGATAH 305
           +T    +  F++   +++      +  K     + G N   H +R   A+   ++     
Sbjct: 187 LTNPQDDAVFVSQQGKRLGPRAVQLRIKTAGERELGQNLHPHMLRHSFASHLLESSQDLR 246

Query: 306 ELMATYGWKTVDQAETYTK 324
            +    G   +   + YT 
Sbjct: 247 AVQELLGHADIKTTQIYTH 265


>gi|282854671|ref|ZP_06264006.1| phage integrase, N-terminal SAM domain protein [Propionibacterium
           acnes J139]
 gi|282582253|gb|EFB87635.1| phage integrase, N-terminal SAM domain protein [Propionibacterium
           acnes J139]
 gi|314981983|gb|EFT26076.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL110PA3]
 gi|315090894|gb|EFT62870.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL110PA4]
          Length = 300

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 42/277 (15%), Positives = 93/277 (33%), Gaps = 27/277 (9%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRK---SGDFDYRKITTKHIRSGVESRKHTPS 131
           + ++         + N+   + +    ++      GD    +I    +R+ +   +   +
Sbjct: 7   VEDFCDHLLALRRSPNTIRGYRADLIDLMSHAYSHGDNILGRIGISQVRAWLADTRVAGA 66

Query: 132 SAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI---------RPWTKEDM 179
           SA    +  ++ RV F+WA  +  V+ +P  ++   K                   +   
Sbjct: 67  SAATMQRRWSAARVFFRWAANEGLVSADPTATLNSVKVPKRLPATLGVDQARHILDEAVA 126

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELP 238
           Q        G++     E L   GLR  + C   +  +  +  ++K T K     TV + 
Sbjct: 127 QARHDESPHGARDAAILEVLYGGGLRVGELCGLDLGDVDRSRHTVKVTGKGDKERTVPMG 186

Query: 239 DGFMKLLAMT---------PIGKETFFINNDKQKMNATQFSIWFK--AKATKAGVNKSAH 287
              ++ +            P   +  F+    ++++            +A     +   H
Sbjct: 187 APALRAIDTWLPRREEWVGPHSGQALFLGERGRRIDQRVVRRVVHTHLRAEPDSPDLGPH 246

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           G+R   AT   + GA    +    G K++   + YT 
Sbjct: 247 GLRHAMATHLLEGGADLRTVQDMLGHKSLATTQIYTH 283


>gi|146280903|ref|YP_001171056.1| site-specific tyrosine recombinase XerC [Pseudomonas stutzeri
           A1501]
 gi|166918896|sp|A4VGW3|XERC_PSEU5 RecName: Full=Tyrosine recombinase xerC
 gi|145569108|gb|ABP78214.1| integrase/recombinase XerC [Pseudomonas stutzeri A1501]
 gi|327479172|gb|AEA82482.1| site-specific tyrosine recombinase XerC [Pseudomonas stutzeri DSM
           4166]
          Length = 299

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 42/267 (15%), Positives = 92/267 (34%), Gaps = 21/267 (7%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQII------RKSGDFDYRKITTKHIRSGVESRKHTP 130
           EY +SA    L+ +S  ++    D+++      R +G  D +    +H+ +    +  + 
Sbjct: 10  EYLRSAR--QLSGHSLDAYRRDLDKVLTYCERERIAGWRDLQGRHLRHLIAEQHRQGQSS 67

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW-TKEDMQQFKSFWS-- 187
            S  + L+S+R L+++  ++     +P   +  PK +    R   T   MQ         
Sbjct: 68  RSLARLLSSVRGLYRYLNQEGLCEHDPATGLSAPKGERRLPRLLDTDRAMQLLDGGVEDD 127

Query: 188 -EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-VELPDGFMKLL 245
               + +   E    SGLR S+     +  L      ++    G  +  + +     + L
Sbjct: 128 FIARRDQAMLELFYSSGLRLSELVGLNLDQLDLAAGLVRVLGKGNKVRELPVGSKAREAL 187

Query: 246 AM-------TPIGKETFFINNDKQKMNATQFSIWFKAK-ATKAGVNKSAHGVRKFSATIS 297
                            FI    +++ A    +  +     + G +   H +R   A+  
Sbjct: 188 QAWLPLRTLAGPADGAVFIGQQGRRLGARAVQLRVRQAGVRELGQHLHPHMLRHSFASHL 247

Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324
            ++      +    G   +   + YT 
Sbjct: 248 LESSQDLRSVQELLGHADIGTTQIYTH 274


>gi|103487281|ref|YP_616842.1| phage integrase [Sphingopyxis alaskensis RB2256]
 gi|98977358|gb|ABF53509.1| phage integrase [Sphingopyxis alaskensis RB2256]
          Length = 303

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 49/281 (17%), Positives = 97/281 (34%), Gaps = 18/281 (6%)

Query: 75  ISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           I  + +  A     + N+  ++    +Q   +              +   + R  + SSA
Sbjct: 7   IDRFLEMMAAERGASRNTLTAYRRDLEQAAERVKGPLGAADAAALRQLMADYRSLSASSA 66

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----------K 183
            + L+++R  F + + +   A NP L + RP  +    R  T +++++           +
Sbjct: 67  ARKLSALRQFFAFLLDEGERADNPALDIARPATRRPLPRILTHDEIRRLFEQAVAEAEGE 126

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFM 242
           +  +   +  L  E L  SGLR ++      + +      +  +  G     V L     
Sbjct: 127 APPAGAVRMLLLLELLYGSGLRATELVSLPRRAVLREREYLIVRGKGDKERLVPLSARAR 186

Query: 243 KLLAM---TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATI 296
                          +   + K  ++  +     +  A +AGV+    S H +R   AT 
Sbjct: 187 AAFDRWLPLLADGSPWLFPSGKAHISRVRLFQMLRDLAARAGVDPAAVSPHVLRHAFATH 246

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
             + GA    L    G   +   E YT    R  + + N R
Sbjct: 247 LLEGGADLRALQLMLGHADIATTEIYTHVDSRRLVELVNRR 287


>gi|320535374|ref|ZP_08035488.1| putative tyrosine recombinase XerC [Treponema phagedenis F0421]
 gi|320147776|gb|EFW39278.1| putative tyrosine recombinase XerC [Treponema phagedenis F0421]
          Length = 307

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 43/240 (17%), Positives = 83/240 (34%), Gaps = 32/240 (13%)

Query: 115 TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
             +   + +  +K  P+S  + L ++R L+++AVR      NP L+V+  K   +  R  
Sbjct: 53  DIRIFVADLREKKFAPASINRMLATVRGLYRYAVRLNLCQTNPALAVKNLKLPKKLPRFL 112

Query: 175 TKEDMQQFKS-------FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKT 226
             E  ++F +        W    +    F  L  +G R S+     ++++ + +  +I  
Sbjct: 113 FPEQAKEFYNLPVNKGLLWEA--RDAALFSVLYSTGCRVSEIAGLDMKNIDSKLNSAIVL 170

Query: 227 QKTGTIITVELPDGFMKLLAM--------------------TPIGKETFFINNDKQKMNA 266
            K      V   D   + L +                    T   ++  FIN     ++ 
Sbjct: 171 GKGSKERKVFFADFAKEYLQIYLAERNELLKKHAGEIQRDKTGRKRDALFINQRGMPLSV 230

Query: 267 TQFSIWF-KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
                   +  A    + K S H  R   A+     GA    +    G + +   + YT 
Sbjct: 231 QGIQYIIDRYAAVSPDLKKISPHVFRHSFASTLISRGADIRVVQEMLGHENISTTQKYTH 290


>gi|294669162|ref|ZP_06734243.1| tyrosine recombinase XerC [Neisseria elongata subsp. glycolytica
           ATCC 29315]
 gi|291308906|gb|EFE50149.1| tyrosine recombinase XerC [Neisseria elongata subsp. glycolytica
           ATCC 29315]
          Length = 303

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 44/280 (15%), Positives = 90/280 (32%), Gaps = 28/280 (10%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQII-------RKSGDFDYRKITTKHIRSGVESRK 127
           +  Y         + ++  ++     Q+        +  G  D+  +  K  +     R 
Sbjct: 15  LDPYLAELQRQGKSEHTLTAYRRDLTQLFNLLPAHGQSVGRNDFVAVLKKLSQQNQSER- 73

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
               S  + L++ R    + +RQ+ +  +P + ++ PK      +    E + +      
Sbjct: 74  ----SLARKLSAWRQYCAFLMRQKLLDADPTVRLKAPKAPERLPKAVDAEPLNRLLDHAP 129

Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGF 241
             +    +    FE L  SGLR ++        +        ++  K G    V L    
Sbjct: 130 AENGLDVRDLAIFELLYGSGLRVAEVHGLNTDDILLDEGWVEVR-GKGGKHRQVPLGSRS 188

Query: 242 MKLLAM------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293
           +  L           G+   F  +  +++   Q     +  A K G   + S H +R   
Sbjct: 189 VSALRAYLPQRIAQSGETALFTGHTGKRLGIRQIQNRLRDWAVKNGSPQHLSPHMMRHSY 248

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           A+    +      +    G   +   + YTK  D  RL  
Sbjct: 249 ASHLLQSSGDIRAIQELLGHSNLSATQIYTK-LDFDRLAQ 287


>gi|296136669|ref|YP_003643911.1| integrase family protein [Thiomonas intermedia K12]
 gi|295796791|gb|ADG31581.1| integrase family protein [Thiomonas intermedia K12]
          Length = 336

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 49/303 (16%), Positives = 100/303 (33%), Gaps = 48/303 (15%)

Query: 70  TLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG---VES 125
           TL+ L ++Y   A     LA  + +++    D +++++      +I + HIR     + +
Sbjct: 13  TLRQLAADYLAHAQTERRLAEGTLVNYRRDLDDLLQRAETLGAAQIESVHIRRWAAQLHA 72

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
              +P +    L++ R  F+W  R  +VA NP   V  PK      +  + +      ++
Sbjct: 73  GGMSPRAIAARLSAWRSFFRWMGRLGFVAANPVQDVRAPKAAKPLPKALSVDQAVALAAY 132

Query: 186 WSEGSQP---------------------RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
             + S P                         E L   GLR S+     V+  +     I
Sbjct: 133 SPQKSTPAARPHRRPHQAEPFATRSARVHAIAELLYSCGLRVSELTGLDVRASKTARGWI 192

Query: 225 --------KTQKTGTIITVELPDGFMKLLA-------------MTPIGKETFFINNDKQK 263
                    T K     +V +    +  L                   +   F+     +
Sbjct: 193 DWDAAEATVTGKGNKRRSVPIGRPALLALRQWLEQRPALLRPDADADAQVALFLGARGAR 252

Query: 264 MNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
           +   +  +  +  A  AG++     H +R   A+    +      +    G  ++   + 
Sbjct: 253 LTPQRVWLELREHARAAGLDARVHPHMLRHSFASHVLQSSGDLRAVQELLGHSSIATTQV 312

Query: 322 YTK 324
           YT+
Sbjct: 313 YTR 315


>gi|237756308|ref|ZP_04584862.1| integrase/recombinase XerD [Sulfurihydrogenibium yellowstonense
           SS-5]
 gi|237691535|gb|EEP60589.1| integrase/recombinase XerD [Sulfurihydrogenibium yellowstonense
           SS-5]
          Length = 297

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 47/285 (16%), Positives = 98/285 (34%), Gaps = 28/285 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK---HTPSSAIQFLTSMR 141
              + N+  ++   F+Q I+  GD +  +IT   I     + +      S+  + L S+ 
Sbjct: 15  ADKSPNTVKNYRVDFNQFIKIVGDKNINEITKADIAKFRMTLQMQNRKSSTIARKLASVN 74

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201
            LF++ +  E V  +P     RPK   +     + E++++         Q +      L 
Sbjct: 75  SLFQYLMDLELVNSSPITKSHRPKVSQKIPSALSNEEVKKLIDALDS-IQDKAIVILFLT 133

Query: 202 SGLRCSDSCRAGVQHL--------------------QNNIFSIKT-QKTGTIITVELP-D 239
           +GLR S+       ++                    + +I  I+   K      V +   
Sbjct: 134 TGLRSSELLSIKKSNIIVERNGQTFSIDRLIEGEVKEGDIAYIRVVGKGDKEREVPITGK 193

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISAD 299
               L+       E   +N     ++        +    K  +    H +R  +AT++  
Sbjct: 194 PLEILVQYLKSINEFLDVNEYIFPISYHLLWRKIRNIGKKLAITLHPHKLRHTAATMALS 253

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
           +GA    +    G  +      Y K   +  L  K ++ +S  ++
Sbjct: 254 SGAELRVIQELLGHASPVTTARYAKVGQKQLL--KATKALSENIE 296


>gi|187779614|ref|ZP_02996087.1| hypothetical protein CLOSPO_03210 [Clostridium sporogenes ATCC
           15579]
 gi|187773239|gb|EDU37041.1| hypothetical protein CLOSPO_03210 [Clostridium sporogenes ATCC
           15579]
          Length = 326

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 51/255 (20%), Positives = 102/255 (40%), Gaps = 23/255 (9%)

Query: 103 IRKSGDFDYRKITTKHIRSGV----ESRKHTPSSAIQFLTSMRVLFKWAV-RQEYVAINP 157
           I    D D + I+   + + V      R +   +  + + ++R  FK+   + + +  NP
Sbjct: 67  ISNISDEDIKNISLTDLFAFVSFAENYRNNGSYAKARKVATLRSFFKFLQGKVKIIKENP 126

Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQ 215
            L +E PK         T ++ ++  S      + R        L  GLR S+ C   + 
Sbjct: 127 ALELESPKISKRNPVYLTLDESKRLLSSIDGKFKERDLCIVTMFLNCGLRLSELCGINIS 186

Query: 216 HLQNNIFSIKTQKTGTIITVELPDGFMKLLA----------MTPIGKETFFINNDKQKMN 265
           +++N++ ++   K     TV L    +K L              + K+  F++ +  ++N
Sbjct: 187 NIKNDVLTVI-GKGNKERTVYLNKACIKTLNDYLSVRKEMGEKIVDKDALFLSKNYTRIN 245

Query: 266 ATQFSIWFKAKATKAGVNK---SAHGVRKFSATISADAGA-TAHELMATYGWKTVDQAET 321
                +  K    K+G++    S H +R  +AT+    G      L    G + +   + 
Sbjct: 246 KRSVEMLVKKYVKKSGLDGEKYSPHKLRHTAATLMYKHGGVDIRSLQMILGHENISTTQI 305

Query: 322 YTK-GADRIRLGIKN 335
           YT   +DR+R  +K+
Sbjct: 306 YTHVDSDRLREAVKS 320


>gi|256840427|ref|ZP_05545935.1| tyrosine recombinase XerC [Parabacteroides sp. D13]
 gi|256737699|gb|EEU51025.1| tyrosine recombinase XerC [Parabacteroides sp. D13]
          Length = 374

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 55/295 (18%), Positives = 104/295 (35%), Gaps = 25/295 (8%)

Query: 46  AY--MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII 103
           AY   SAL  + PK+    SP   P         Y ++      + ++  ++ +YF +  
Sbjct: 70  AYIDYSALKNTLPKKNGKTSPAIPPG--------YAETLRQLRYSEHTVRAYTAYFKEFQ 121

Query: 104 RKSGDFDYRKITTKHIRSGV----ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL 159
           +     + R I  + I + +    ++R  +       + S++  F+  + QE      C 
Sbjct: 122 QYFAGRNLRYIRPEEINAYIVHLIDTRGISSCQQNLRINSIKFYFEKVLGQERK----CY 177

Query: 160 SVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ- 218
            V+R KR+       +KE+++          +    F  L  +GLR S+        +  
Sbjct: 178 EVKRAKRERTLPDVLSKEEIKSILDATGPDIRLFCMFSLLYSAGLRISELLDLKPHDINV 237

Query: 219 -NNIFSIKTQKTGTIITVELPDGFMKLLAMTPI---GKETFFINNDKQKMNATQFSIWFK 274
             ++  ++  K        L    ++ L         +E  F     +    +  S   K
Sbjct: 238 SRSLIRVRQGKGRKDRYTLLSKPLVRKLTEYTKLYKPQEWLFERYKGEPFTESIVSKKLK 297

Query: 275 AKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
             A +AG+ K    H +R   AT   + G     +    G   +   E Y   AD
Sbjct: 298 EAAKEAGITKRVYPHLLRHSFATHLIEQGTDLKIVKELLGHNQLKTTEMYVHIAD 352


>gi|229845511|ref|ZP_04465639.1| site-specific tyrosine recombinase XerC [Haemophilus influenzae
           6P18H1]
 gi|229811527|gb|EEP47228.1| site-specific tyrosine recombinase XerC [Haemophilus influenzae
           6P18H1]
          Length = 295

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 40/260 (15%), Positives = 89/260 (34%), Gaps = 21/260 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRKHTPSSAIQFLT 138
             ++ ++  +++   D II+     D    T       + I +  + +     S    L+
Sbjct: 16  RQMSPHTITNYQHQLDAIIKILAQQDIHAWTQVTPSVVRFILAESKKQGLKEKSLALRLS 75

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS---FWSEGSQPRLA 195
           ++R    + V+Q  + +NP   +  PK+     +    E +QQ  +         + R  
Sbjct: 76  ALRRFLSFLVQQGELKVNPATGISAPKQGRHLPKNMDGEQVQQLLANDSKEPIDIRDRAI 135

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLLA 246
            E +  SGLR S+     +  +   +  ++    G    V          + +       
Sbjct: 136 LELMYSSGLRLSELHGLDLNSINTRVREVRVIGKGNKERVVPFGRYASHAIQEWLKVRAL 195

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATA 304
             P   E  F++    +++        +    + G+N   + H +R   AT   +A +  
Sbjct: 196 FNP-KDEALFVSQLGNRISHRAIQKRLETWGIRQGLNSHLNPHKLRHSFATHMLEASSDL 254

Query: 305 HELMATYGWKTVDQAETYTK 324
             +    G   +   + YT 
Sbjct: 255 RAVQELLGHSNLSTTQIYTH 274


>gi|311113293|ref|YP_003984515.1| tyrosine recombinase XerD [Rothia dentocariosa ATCC 17931]
 gi|310944787|gb|ADP41081.1| tyrosine recombinase XerD [Rothia dentocariosa ATCC 17931]
          Length = 391

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 43/237 (18%), Positives = 77/237 (32%), Gaps = 31/237 (13%)

Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
            R         P+S  + + ++R    +      +  +P  +V+ PK      +  + E 
Sbjct: 134 TRDVTLPLPLGPNSIARTMAAVRGAHSFWHASRILETDPAAAVKPPKNVKRLPKAVSVEQ 193

Query: 179 MQQFKS----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI------------- 221
           MQ+  +        G + R   EFL  +G R S+     +  +                 
Sbjct: 194 MQKLLAIPSLKTPTGLRNRAILEFLYATGARVSEMLATDLDDIHLGEKPRDENGESIAVP 253

Query: 222 FSIKT-QKTGTIITVELPDGFMKLL-----AMTPI------GKETFFINNDKQKMNATQF 269
             ++   K G    V L     + L        P       G    F+N    ++     
Sbjct: 254 GYVRLFGKGGKERLVPLGSYAQRALEDYIVRARPKFASHGKGTAALFLNGRGSRLGRQGA 313

Query: 270 SIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            +  K  A +AG+  + S H +R   AT     GA    +    G  ++   + YTK
Sbjct: 314 WLILKETAEEAGLSSDFSPHSIRHSFATHLVQGGADIRVVQELLGHASIATTQVYTK 370


>gi|254251134|ref|ZP_04944452.1| Site-specific recombinase XerC [Burkholderia dolosa AUO158]
 gi|124893743|gb|EAY67623.1| Site-specific recombinase XerC [Burkholderia dolosa AUO158]
          Length = 306

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 48/280 (17%), Positives = 92/280 (32%), Gaps = 32/280 (11%)

Query: 75  ISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTP 130
           I+ Y  +  H   L+ ++  ++    D++ + +       +T   +R  V        + 
Sbjct: 6   IAAYLSNLKHVRQLSEHTLRAYTHELDELKKLAAGRPLETLTAVDMRGAVARAHAGGLSA 65

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFW 186
            S    L++ R  ++W  +   +  NP  +V  PKR     +  + +D    M    +  
Sbjct: 66  RSIAHRLSAWRAFYRWLAQHVEMPANPVAAVRAPKRPKTLPKALSVDDASALMDAPLADT 125

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRA-------------GVQHLQNNIFSIKTQKTGTII 233
           +EG + R   E    SGLR ++                 G   L     +++  K     
Sbjct: 126 TEGIRDRAILELFYSSGLRLAELIGLDVAYAQADGYRSAGWLDLAEAEVTVR-GKGNKER 184

Query: 234 TVELPDGFMKLLAMTPIGKETF--------FINNDKQKMNATQFSIWFKAKATKAGVNK- 284
            V +    +  L      +  F        F++    +M         K  A  AG+   
Sbjct: 185 KVPVGRKAIDALNAWLAVRGEFVRHDPHPLFLSVRGNRMAPGVVRERVKRAALAAGIPAN 244

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
              H +R   AT    +      +    G  +V   + YT
Sbjct: 245 VHPHVLRHSFATHVLQSSGDLRAVQELLGHASVAATQIYT 284


>gi|319900063|ref|YP_004159791.1| integrase family protein [Bacteroides helcogenes P 36-108]
 gi|319415094|gb|ADV42205.1| integrase family protein [Bacteroides helcogenes P 36-108]
          Length = 376

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 55/295 (18%), Positives = 104/295 (35%), Gaps = 25/295 (8%)

Query: 46  AY--MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII 103
           AY   SAL  + PK+    SP   P         Y ++      + ++  ++ +YF +  
Sbjct: 72  AYINYSALKNTLPKKNGKTSPAIPPG--------YAETLRQLRYSEHTVRAYTAYFREFQ 123

Query: 104 RKSGDFDYRKITTKHIRSGV----ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL 159
           +     + R I  + I + +    ++R  +       + S++  F+  + QE      C 
Sbjct: 124 QYFAGRNLRYIRPEEINAYIVHLIDTRGISSCQQNLRINSIKFYFEKVLGQERK----CY 179

Query: 160 SVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ- 218
            V+R KR+       +KE+++          +    F  L  +GLR S+        +  
Sbjct: 180 EVKRAKRERTLPDVLSKEEIKSILDATGPDIRLFCMFSLLYSAGLRISELLDLKPHDINV 239

Query: 219 -NNIFSIKTQKTGTIITVELPDGFMKLLAMTPI---GKETFFINNDKQKMNATQFSIWFK 274
             ++  ++  K        L    ++ L         +E  F     +    +  S   K
Sbjct: 240 SRSLIRVRQGKGRKDRYTLLSKPLVRKLTEYTKLYKPQEWLFERYKGEPFTESIVSKKLK 299

Query: 275 AKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
             A +AG+ K    H +R   AT   + G     +    G   +   E Y   AD
Sbjct: 300 EAAKEAGITKRVYPHLLRHSFATHLIEQGTDLKIVKELLGHNQLKTTEMYVHIAD 354


>gi|296115017|ref|ZP_06833660.1| integrase/recombinase XerD [Gluconacetobacter hansenii ATCC 23769]
 gi|295978435|gb|EFG85170.1| integrase/recombinase XerD [Gluconacetobacter hansenii ATCC 23769]
          Length = 304

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 53/266 (19%), Positives = 89/266 (33%), Gaps = 26/266 (9%)

Query: 85  GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTK--HIRSGVESRKHTPSSAIQFLTS 139
              A+N+  ++    D +   +   G    +    +     SG+     +  +  + L+ 
Sbjct: 17  RGAALNTLKAYRRDLDDLGTALAVEGASLPQASARQLGAYLSGLAQAGLSARTQARRLSC 76

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQ---- 191
           +R  + + VR+     NP   +E P+      R  ++ D+    +        G+     
Sbjct: 77  LRQYYLFLVREGRRPDNPASMLEAPRLGATLPRFLSEGDVDALLAACVARADAGAHEVRR 136

Query: 192 ---PRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELP----DGFMK 243
               R A E L  SGLR S+        L+      +   K G    V L     D   +
Sbjct: 137 MLVARTALEILYASGLRISELLSLPRAALERTTGMLLVRGKGGRERMVPLSSRARDAADE 196

Query: 244 LLAMTPIGKETFFI--NNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISA 298
           L+ M    +  F     N  + M    F       A KAG++    S H +R   AT   
Sbjct: 197 LMRMDRPLRSMFLFPGRNPLRAMTRQGFDRILHDVALKAGLDPQRLSPHVLRHSFATHLL 256

Query: 299 DAGATAHELMATYGWKTVDQAETYTK 324
             GA    L    G   +   + YT 
Sbjct: 257 SHGADLRALQVLLGHADITTTQIYTH 282


>gi|170703226|ref|ZP_02894029.1| tyrosine recombinase XerC [Burkholderia ambifaria IOP40-10]
 gi|170131859|gb|EDT00384.1| tyrosine recombinase XerC [Burkholderia ambifaria IOP40-10]
          Length = 306

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 46/280 (16%), Positives = 90/280 (32%), Gaps = 32/280 (11%)

Query: 75  ISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTP 130
           I+ Y  +  H   L+ ++  ++    D++ + +       +T   +R  V        + 
Sbjct: 6   IAAYLSNLKHVRQLSEHTLRAYTHELDELKKLAAGRPLDTLTAVDMRGAVARAHAGGLSA 65

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFW 186
            S    L++ R  ++W  ++  +  NP  +V  PKR     +  + +D    M    +  
Sbjct: 66  RSIAHRLSAWRAFYRWLAQRIEMPANPVAAVRAPKRPKTLPKALSVDDASALMDAPLAGT 125

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRA-------------GVQHLQNNIFSIKTQKTGTII 233
           +EG +     E    SGLR ++                 G   L     +++  K     
Sbjct: 126 TEGIRDHAILELFYSSGLRLAELIGLDVMYTQADGYRSAGWLDLDEAEVTVR-GKGNKER 184

Query: 234 TVELPDGFMKLLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284
            V +    +  L                  F++    +M         K  A  AG+   
Sbjct: 185 KVPVGRKAIDALNAWLAVRGEFVKHDPHPLFVSVRGNRMAPGVVRERVKRAALTAGIPAN 244

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
              H +R   AT    +      +    G  +V   + YT
Sbjct: 245 VHPHVLRHSFATHVLQSSGDLRAVQELLGHASVSATQVYT 284


>gi|153931223|ref|YP_001384765.1| phage integrase family site specific recombinase [Clostridium
           botulinum A str. ATCC 19397]
 gi|152927267|gb|ABS32767.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum A str. ATCC 19397]
          Length = 281

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 49/261 (18%), Positives = 92/261 (35%), Gaps = 13/261 (4%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSS 132
           I+ Y  +     L++ + ++++     I           I    +R  +  R  K   SS
Sbjct: 9   IAIYLAAKKLDGLSLKTLLNYKYNL-AIFADYLRKPLATINAMDLRIFLAQRCKKMKASS 67

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
               ++ ++  F W   +EY+  NP L +++ K+     R   +E+++  +       + 
Sbjct: 68  VNGQISILKSFFGWLHMEEYIPKNPSLKLKQTKQPKRVRRALNQEELELLRQACKTN-RE 126

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-----ITVELPDGFMKLLAM 247
           +   EFL+ +G R S+        +  N  S+     G         V+      K LA+
Sbjct: 127 KALLEFLISTGCRLSEVVGIDKNDIDWNEMSLHVIGKGNKERKVYFDVKTKILLKKYLAI 186

Query: 248 TPIGKETFFINNDKQKMNATQFSIW--FKAKATKAGVNKS--AHGVRKFSATISADAGAT 303
                   F+ +          SI    K  A + G  KS   H  R   AT   ++G  
Sbjct: 187 RNDITPALFVASKGTHARLGGRSIQREIKKIAKRVGTEKSIYPHLFRHSFATGKINSGMP 246

Query: 304 AHELMATYGWKTVDQAETYTK 324
              L    G +     + Y +
Sbjct: 247 LPVLQHIMGHENPATTQIYAE 267


>gi|74318546|ref|YP_316286.1| tyrosine recombinase XerC [Thiobacillus denitrificans ATCC 25259]
 gi|74058041|gb|AAZ98481.1| tyrosine recombinase XerC [Thiobacillus denitrificans ATCC 25259]
          Length = 294

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 40/267 (14%), Positives = 84/267 (31%), Gaps = 20/267 (7%)

Query: 78  YRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT---PSSA 133
           Y +  A    L+ ++  ++    + + R +       +T+  IR  +   +      +S 
Sbjct: 7   YLQHLAAERRLSAHTLSAYARDLENLARLTDGKPLDTLTSHDIRGAIVKLRAGGLAAASV 66

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-----E 188
            + L+S R  + +A R+     NPC  +  PK         + +   +            
Sbjct: 67  ARQLSSWRGFYAFACRRLGYPDNPCAGLRPPKASRALPDILSPDACARLLDAPDGDEDLL 126

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPD 239
            ++ R  FE    SGLR S+     +  L       +    G    +          +  
Sbjct: 127 ATRDRAMFELFYSSGLRLSELVGIDLPDLDLASGEARVTGKGKKTRLVPVGRQAVAAITA 186

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATIS 297
                L +     E  F+     ++      +     A  +G+ +    H +R   AT  
Sbjct: 187 WLPLRLTLVRTPTEALFVGQRGARLTPRNVQLRLARWARASGLGQHVHPHMLRHAFATHV 246

Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324
             +      +    G  ++   + YT 
Sbjct: 247 LQSSGDLRAVQEMLGHASISTTQVYTH 273


>gi|288925733|ref|ZP_06419664.1| integrase [Prevotella buccae D17]
 gi|288337388|gb|EFC75743.1| integrase [Prevotella buccae D17]
          Length = 407

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 81/212 (38%), Gaps = 16/212 (7%)

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-PWTKEDMQQFKSFWSEGSQP--RL 194
              + L  +AV +E +  +PCL ++   +     +   ++E++Q+  +          R 
Sbjct: 190 QRFKRLINYAVEKEVIKKSPCLKIKIMNKGDILNKDILSREELQKLFATHYPNESEVVRR 249

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQK-----TGTIITVELPDGFMKLLAM 247
           AF    ++G+R  D        +   N I + +  K       + +++ L D  + ++  
Sbjct: 250 AFAVTCFTGIRHCDLATLTYGCIDYSNKIMTFRQSKVQHDSNVSGVSIPLNDTLVAIIGE 309

Query: 248 TPIG-KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATA 304
            P G K++  I       +    +   +    +AG++K  + H  R   AT     GA  
Sbjct: 310 KPEGAKDSDLIFAL---PSIEGSNKVLRHWIKRAGIDKHITWHCGRHSFATNLLSTGANI 366

Query: 305 HELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
             +    G  ++   + Y +  D  +    NS
Sbjct: 367 KVVSELLGHSSLKFTQKYVRALDDQKKAAINS 398


>gi|221201912|ref|ZP_03574949.1| tyrosine recombinase XerC [Burkholderia multivorans CGD2M]
 gi|221207582|ref|ZP_03580590.1| tyrosine recombinase XerC [Burkholderia multivorans CGD2]
 gi|221215807|ref|ZP_03588766.1| tyrosine recombinase XerC [Burkholderia multivorans CGD1]
 gi|221164343|gb|EED96830.1| tyrosine recombinase XerC [Burkholderia multivorans CGD1]
 gi|221172428|gb|EEE04867.1| tyrosine recombinase XerC [Burkholderia multivorans CGD2]
 gi|221178332|gb|EEE10742.1| tyrosine recombinase XerC [Burkholderia multivorans CGD2M]
          Length = 306

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 46/280 (16%), Positives = 90/280 (32%), Gaps = 32/280 (11%)

Query: 75  ISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTP 130
           I+ Y  +  H   L+ ++  ++    D++ + +       +    IR  V        + 
Sbjct: 6   IAAYLSNLKHVRQLSEHTLRAYTHELDELKKLAAGRPLDTLVAADIRGAVARAHAGGLSA 65

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFW 186
            S    L++ R  ++W  ++  +  NP  +V  PKR     +  + +D    M    +  
Sbjct: 66  RSISHRLSAWRAFYRWLAQRVEMPANPVAAVRAPKRPKTLPKALSVDDASALMDAPLADT 125

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRA-------------GVQHLQNNIFSIKTQKTGTII 233
           +EG +     E    SGLR ++                 G   L     +++  K     
Sbjct: 126 TEGIRDHAILELFYSSGLRLAELIGLDVAYTQTGDYRSAGWLDLAEAEVTVR-GKGNKER 184

Query: 234 TVELPDGFMKLLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284
            V +    +  L                  F++    +M+        K  A  AG+   
Sbjct: 185 KVPVGRKAIDALNAWLAVRGEFVKHDPHPLFLSVRGNRMSPGVVRERVKRAALAAGIPAH 244

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
              H +R   AT    +      +    G  +V   + YT
Sbjct: 245 VHPHVLRHSFATHVLQSSGDLRAVQELLGHASVSATQVYT 284


>gi|167835019|ref|ZP_02461902.1| site-specific tyrosine recombinase XerC [Burkholderia thailandensis
           MSMB43]
          Length = 306

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 42/280 (15%), Positives = 88/280 (31%), Gaps = 32/280 (11%)

Query: 75  ISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTP 130
           I++Y  +  H   L+ ++  ++    D++ + +       +T   +R  V        + 
Sbjct: 6   IADYLSNLRHVRKLSDHTLRAYAHELDELKKLANGRPLESLTAVDMRGAVARAHAGGLSA 65

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
            S    L++ R  ++W  +   +  NP  +V  PK      +  + +D        + G+
Sbjct: 66  RSISHRLSAWRAFYRWFSQHVEMNANPVAAVRAPKHAKTLPKALSVDDAAALMDAPTAGT 125

Query: 191 ----QPRLAFEFLLYSGLRCSDSCRA-------------GVQHLQNNIFSIKTQKTGTII 233
               +     E    SGLR ++                 G   L     +++  K     
Sbjct: 126 AENLRDHAILELFYSSGLRLAELIGLDIEYAKDGDYRSEGWLDLAEAEVTVR-GKGDKER 184

Query: 234 TVELPDGFMKLLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284
            V +    +  L                  F++    +M+        K  A  AG+   
Sbjct: 185 KVPVGRKAIDALNAWLAVRGEFVKRDPRPLFLSVRGNRMSPGVVRERVKRAALAAGIPAN 244

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
              H +R   AT    +      +    G  ++   + YT
Sbjct: 245 VHPHVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYT 284


>gi|319427383|gb|ADV55457.1| ISSod25 integrase [Shewanella putrefaciens 200]
          Length = 287

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 43/267 (16%), Positives = 90/267 (33%), Gaps = 21/267 (7%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----SRK 127
             L+ ++         +  +R ++     Q+ +   +     IT + + +        R 
Sbjct: 2   SSLLQQFHDEIRLRGYSARTRSAYLRAITQL-QHYANQPLDSITDEQLTAYFRYLNLERH 60

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           H+ ++    L  +  L++  + +++      + +  PKR  +  +  + +D+     +  
Sbjct: 61  HSRATLKLQLNGIHFLYEHVLGRDF-----TVQLSLPKRPHKLPQLLSCQDIAALL-YHC 114

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLL 245
           +  + R         GLR S+     V  +      +K    K      V +    + LL
Sbjct: 115 QNLKQRAMLALCYGCGLRVSELTHIKVADIDGQRQLLKVCQGKGAYDRLVIISPTLLTLL 174

Query: 246 A---MTPIGKETFFINNDK---QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS 297
                     E  F +        ++ + F       A  AG+    S H +R   AT  
Sbjct: 175 RQYWRAYHPVEWLFASTYHDVVYPLHESTFRKALAKSARLAGITKPCSPHSLRHAYATHQ 234

Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324
             AG   H+L A  G  ++   E Y  
Sbjct: 235 LQAGMPLHQLQAQLGHHSIKSTERYLH 261


>gi|53724457|ref|YP_104732.1| site-specific tyrosine recombinase XerC [Burkholderia mallei ATCC
           23344]
 gi|67639320|ref|ZP_00438190.1| tyrosine recombinase XerC [Burkholderia mallei GB8 horse 4]
 gi|121598868|ref|YP_994214.1| site-specific tyrosine recombinase XerC [Burkholderia mallei SAVP1]
 gi|124383751|ref|YP_001028133.1| site-specific tyrosine recombinase XerC [Burkholderia mallei NCTC
           10229]
 gi|126441319|ref|YP_001057248.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei
           668]
 gi|126449297|ref|YP_001082944.1| site-specific tyrosine recombinase XerC [Burkholderia mallei NCTC
           10247]
 gi|167003305|ref|ZP_02269093.1| tyrosine recombinase XerC [Burkholderia mallei PRL-20]
 gi|167892320|ref|ZP_02479722.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei
           7894]
 gi|167900817|ref|ZP_02488022.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei
           NCTC 13177]
 gi|217424901|ref|ZP_03456397.1| tyrosine recombinase XerC [Burkholderia pseudomallei 576]
 gi|237810385|ref|YP_002894836.1| tyrosine recombinase XerC [Burkholderia pseudomallei MSHR346]
 gi|254175248|ref|ZP_04881909.1| tyrosine recombinase XerC [Burkholderia mallei ATCC 10399]
 gi|254201831|ref|ZP_04908195.1| tyrosine recombinase XerC [Burkholderia mallei FMH]
 gi|254207161|ref|ZP_04913512.1| tyrosine recombinase XerC [Burkholderia mallei JHU]
 gi|254359667|ref|ZP_04975938.1| tyrosine recombinase XerC [Burkholderia mallei 2002721280]
 gi|52427880|gb|AAU48473.1| integrase/recombinase XerC [Burkholderia mallei ATCC 23344]
 gi|121227678|gb|ABM50196.1| tyrosine recombinase XerC [Burkholderia mallei SAVP1]
 gi|124291771|gb|ABN01040.1| integrase/recombinase XerC [Burkholderia mallei NCTC 10229]
 gi|126220812|gb|ABN84318.1| tyrosine recombinase XerC [Burkholderia pseudomallei 668]
 gi|126242167|gb|ABO05260.1| tyrosine recombinase XerC [Burkholderia mallei NCTC 10247]
 gi|147747725|gb|EDK54801.1| tyrosine recombinase XerC [Burkholderia mallei FMH]
 gi|147752703|gb|EDK59769.1| tyrosine recombinase XerC [Burkholderia mallei JHU]
 gi|148028881|gb|EDK86813.1| tyrosine recombinase XerC [Burkholderia mallei 2002721280]
 gi|160696293|gb|EDP86263.1| tyrosine recombinase XerC [Burkholderia mallei ATCC 10399]
 gi|217391921|gb|EEC31947.1| tyrosine recombinase XerC [Burkholderia pseudomallei 576]
 gi|237506023|gb|ACQ98341.1| tyrosine recombinase XerC [Burkholderia pseudomallei MSHR346]
 gi|238519856|gb|EEP83322.1| tyrosine recombinase XerC [Burkholderia mallei GB8 horse 4]
 gi|243061115|gb|EES43301.1| tyrosine recombinase XerC [Burkholderia mallei PRL-20]
          Length = 310

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 45/279 (16%), Positives = 93/279 (33%), Gaps = 30/279 (10%)

Query: 75  ISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTP 130
           I +Y  +  H   L+ ++  ++    D++ R +       +T   +RS V        + 
Sbjct: 10  IVDYLSNLRHVRKLSDHTLRAYAHELDELKRLANGRPLDSLTAVDMRSAVARAHAGGLSA 69

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
            S    L++ R  ++W  +   +  NP  +V  PKR     +  + +D        + G+
Sbjct: 70  RSISHRLSAWRAFYRWFSQHVEMNANPVAAVRAPKRAKTLPKALSVDDTAALMDAPTAGT 129

Query: 191 ----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS------------IKTQKTGTIIT 234
               +     E    SGLR ++     ++++++  +                 K      
Sbjct: 130 AESLRDHAILELFYSSGLRLAELIGLDIEYVKDGAYRSAGWLDLAEAEVTVRGKGDKERK 189

Query: 235 VEL----PDGFMKLLAM----TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284
           V +     D     LA+            F++    +M+        K  A  AG+    
Sbjct: 190 VPVGRKALDALHAWLAVRGEFVKHDPRPLFLSVRGNRMSPGVVRERVKRAALAAGIPANV 249

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
             H +R   AT    +      +    G  ++   + YT
Sbjct: 250 HPHVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYT 288


>gi|302189430|ref|ZP_07266103.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           syringae 642]
          Length = 299

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 37/259 (14%), Positives = 93/259 (35%), Gaps = 19/259 (7%)

Query: 85  GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIR---SGVESRKHTPSSAIQFLT 138
             ++ ++  ++     ++    +K+    +  +  +H+R   +    +  +  S  + L+
Sbjct: 16  RQVSPHTLEAYRRDLGKVLAYCQKAQLSSWSDLDIQHLRSFTARQHQQGQSSRSLARMLS 75

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRL 194
           ++R  +K+  R+     +P   +  PK +    +    +   Q      E      + + 
Sbjct: 76  AVRGFYKYLNREGICQHDPANGLSPPKGERRLPKTLDTDRTAQLLDGGVEDDFLAHRDQA 135

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV--------ELPDGFMKLLA 246
             E L  SGLR S+     +  L      ++    G+   V        +  + ++ L A
Sbjct: 136 ILELLYSSGLRLSELTGLNLDQLDLRDGLVQVLGKGSKTRVLPVGSKARQALEVWLPLRA 195

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAK-ATKAGVNKSAHGVRKFSATISADAGATAH 305
           +T    +  F++   +++      +  KA    + G N   H +R   A+   ++     
Sbjct: 196 LTNPRDDAVFVSQQGKRLGPRAIQVRLKAAGERELGQNLHPHMLRHSFASHLLESSQDLR 255

Query: 306 ELMATYGWKTVDQAETYTK 324
            +    G   +   + YT 
Sbjct: 256 AVQELLGHADIKTTQIYTH 274


>gi|254452706|ref|ZP_05066143.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198267112|gb|EDY91382.1| phage integrase [Octadecabacter antarcticus 238]
          Length = 320

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 44/258 (17%), Positives = 85/258 (32%), Gaps = 19/258 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLF 144
            +L   S+ S      +     G       T   ++   +    +  S      +M  + 
Sbjct: 39  RNLGPASQSSHLRACKRFAAWLGRSPETA-TPDDVKYFQQHLIESGVSICTRNQTMTGV- 96

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGL 204
           K+ +R      +    +   K   +     +K+++++  +      + R+        G+
Sbjct: 97  KFLLRVTLRRHDLVAEIFHLKEPVKVPLVLSKKEIKRILAMAPS-LKARVMLSLAYGCGM 155

Query: 205 RCSDSCRAGVQHLQNN--IFSIKTQKTGTIITVELPDGFMKLLAMT------------PI 250
           R  +  R  V  + ++  I  I   K      V LP   + LL               P 
Sbjct: 156 RAGEVVRLKVGDIDSDQEIIRIVQSKGRKDRIVMLPVDILSLLRDWWKERPTGQDKDVPA 215

Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELM 308
            +   F +   + ++A Q S  FK  A +AG+ K  + H +R   AT   + G     + 
Sbjct: 216 PERVLFPSYRGKHLSARQISRLFKETAREAGITKPVTLHTLRHSFATHLLERGVDIRVIQ 275

Query: 309 ATYGWKTVDQAETYTKGA 326
           A  G   +     Y   A
Sbjct: 276 ALLGHSKLTTTARYASVA 293


>gi|160915107|ref|ZP_02077320.1| hypothetical protein EUBDOL_01115 [Eubacterium dolichum DSM 3991]
 gi|158432906|gb|EDP11195.1| hypothetical protein EUBDOL_01115 [Eubacterium dolichum DSM 3991]
          Length = 311

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 48/291 (16%), Positives = 98/291 (33%), Gaps = 32/291 (10%)

Query: 71  LKWLISEYRKSAHWGSL-AVNSRISFESYFDQIIRKSGDF---DYRKITTKHIRSGVE-- 124
           L  +  +Y          A  +  S+ +   Q ++        +   I   H++  +E  
Sbjct: 3   LTDVCQDYLHYIQAIDRKAEATIASYTNDLRQYVQYMQTCKIEEVENIDYSHVQDFLEYL 62

Query: 125 ------------SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
                        +K + +S    +TS+ V  ++        +NP  ++   K       
Sbjct: 63  RQDHYDEKGQCIHKKKSSASINHMITSLHVFHRYLSMTYPKLLNPVQNIRTKKAVQHLPV 122

Query: 173 PWTKEDMQQFKSFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QK 228
            +  +D+++    +         +   E L   GLR S+ C   +Q +      ++   K
Sbjct: 123 YFNMQDIERLLDSFRDSDAEIMDKAIVELLYGCGLRVSECCSLMLQQVYLEQGFLRVIGK 182

Query: 229 TGTIITVELPDGFMKLL--AMTPIGKETF------FINNDKQKMNATQFSIWFKAKATKA 280
                 V +     K L   +T + K+ +      FIN   Q++      +  K +    
Sbjct: 183 GNKERMVPMHARCKKALENYLTKVRKQRYARSNFVFINAKGQEITRQYIHVMIKKRLLAL 242

Query: 281 GVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           G++   SAH  R   A+   D GA    +    G   +   + YT   ++ 
Sbjct: 243 GLDERLSAHSFRHSFASHLLDGGADLRVVQELLGHSDISTTQIYTHVQNKR 293


>gi|37527560|ref|NP_930904.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|37527568|ref|NP_930912.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|36786995|emb|CAE16069.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
 gi|36787003|emb|CAE16077.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 376

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 57/305 (18%), Positives = 103/305 (33%), Gaps = 32/305 (10%)

Query: 64  PRKKPTTLKWLISEY---RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT---K 117
           P   P +L  L+  +   R+   W    +  +     +F     + G +    IT    +
Sbjct: 24  PAHDPKSLYALLLRFVVWRQERSWSESTLKVQTHHTYHFILWATERGLYYAADITRPILE 83

Query: 118 HIRSGVESRKHT------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
             +  +   + T        +    L  ++V FKW  +Q  +  NP   +E P+ +    
Sbjct: 84  RYQRYLYQYRKTNGEPLSTRTQRTQLEPLKVWFKWLTKQNLILANPAADIELPRLEKHLP 143

Query: 172 R-PWTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSI 224
           R   T ++ +Q  +        G + R   E L  +G+R  +  R  V  +       +I
Sbjct: 144 RYILTIDETEQILAQPDLTTLQGIRDRALMELLWSTGMRRGELTRLDVYSVDGKRKTVTI 203

Query: 225 KTQKTGTIITVELPDGFMKLLAM-----------TPIGKETFFINNDKQKMNATQFSIWF 273
           +  K      + L +  +  L              P  K  F   +    + A   S   
Sbjct: 204 RQGKGNKDRVLPLGERALSWLQRYQQQVRPQLIVNPDVKALFVAMDGLDGLQANGISNLV 263

Query: 274 KAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            A     G+ K    H  R   AT   + GA    + A  G  +V+  + YT+ + R   
Sbjct: 264 TAYINAVGIEKKGACHLFRHAMATQMLENGADLRWIQAMLGHASVESTQVYTQVSIRALQ 323

Query: 332 GIKNS 336
            +  S
Sbjct: 324 AVHAS 328


>gi|320527482|ref|ZP_08028663.1| putative site-specific tyrosine recombinase XerC [Solobacterium
           moorei F0204]
 gi|320132195|gb|EFW24744.1| putative site-specific tyrosine recombinase XerC [Solobacterium
           moorei F0204]
          Length = 307

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 43/272 (15%), Positives = 89/272 (32%), Gaps = 28/272 (10%)

Query: 90  NSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-----TP---SSAIQFLTSMR 141
             R   E + + +     D  +  +T   +   +   +       P   SS  + L+S++
Sbjct: 27  AYRRDVERFLEYLREHRID-SFEHVTKTDVSDYITQLRDGEIGGKPLSNSSYARNLSSLK 85

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ----QFKSFWSEGSQPRLAFE 197
             +++  R E +  NP    +    + +     T + M+    QF        + R   E
Sbjct: 86  SFYRYLNRFEGIKANPVRIFKGGSIRRKLPEFLTFDQMETMLNQFDLHDPVQIRNRCIIE 145

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLA---------- 246
            +   GLR S+     +  +      +    K      V       +L+           
Sbjct: 146 VMYACGLRVSECAGLKISSINLVEGFLTVLGKESKERMVPFYPRCKQLIQYYMNNARGTF 205

Query: 247 -MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG--VNKSAHGVRKFSATISADAGAT 303
                  +  F+N + + ++A    +  +     A   ++   H +R   AT   D GA 
Sbjct: 206 MEKTQEHDILFVNQNGRPISARSIQLICEKAGEDANLPIHIHPHMIRHSFATHMLDNGAD 265

Query: 304 AHELMATYGWKTVDQAETYTK-GADRIRLGIK 334
              +    G + +   + YT    DR+R  + 
Sbjct: 266 LRIVQELLGHENLGTTQIYTHVTQDRLRKVVD 297


>gi|239826606|ref|YP_002949230.1| site-specific tyrosine recombinase XerC [Geobacillus sp. WCH70]
 gi|239806899|gb|ACS23964.1| tyrosine recombinase XerC [Geobacillus sp. WCH70]
          Length = 300

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 43/272 (15%), Positives = 97/272 (35%), Gaps = 26/272 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKI------TTKHIRSGVESRKHTPSSAIQFLT 138
            + +  + + ++   +Q      +     +        +   + +  +K +  S  + ++
Sbjct: 19  KNYSQYTIVCYQRDVEQFFEFMNEQGIHHLHEVTYNDVRLYLTKLYEQKQSSRSISRKIS 78

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK----SFWSEGSQPRL 194
           S+R  +K+ +R++ V  NP      PK++ +      ++++++         + G + + 
Sbjct: 79  SLRSFYKFLLREKKVKENPFALAALPKKEQKIPNFLYEQELEKLFYVNDVNTAIGQRNQA 138

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVE------------LPDGF 241
             E L  +G+R S+ C   +  +  ++ +I     G     V             +  G 
Sbjct: 139 ILELLYATGVRVSECCHIQLSDIDFSVSTILIHGKGNKQRYVPFGRFAKEALERYIHHGR 198

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISAD 299
            +LL          F+N     +              KA +  N S H +R   AT   +
Sbjct: 199 RELLQKAKSAHAYLFVNARGNPLTPRGVRYILDEIVKKAALTQNISPHVLRHTFATHLLN 258

Query: 300 AGATAHELMATYGWKTVDQAETYTK-GADRIR 330
            GA    +    G   +   + YT    DR+R
Sbjct: 259 EGADMRTVQELLGHAHLSSTQVYTHVTKDRLR 290


>gi|296502316|ref|YP_003664016.1| site-specific tyrosine recombinase XerD [Bacillus thuringiensis
           BMB171]
 gi|296505552|ref|YP_003667252.1| site-specific tyrosine recombinase XerD [Bacillus thuringiensis
           BMB171]
 gi|296323368|gb|ADH06296.1| site-specific tyrosine recombinase XerD [Bacillus thuringiensis
           BMB171]
 gi|296326604|gb|ADH09532.1| site-specific tyrosine recombinase XerD [Bacillus thuringiensis
           BMB171]
          Length = 301

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 39/293 (13%), Positives = 102/293 (34%), Gaps = 27/293 (9%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFES----YFDQIIRKSGDFDYRKITTKHIRSGVESR 126
           L  L+ E+       + +  +  +++     +   +       D   I   HI+  V+ +
Sbjct: 2   LDNLLKEFIFELKIKNYSDRTVDTYKYNVGLFITYLNEHHEVDDIEDIAPFHIKKFVQHQ 61

Query: 127 ---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
                  +     + S+R  FK+ V +EY+ +N    ++  K  TE I+ +T +++ +  
Sbjct: 62  IGLGKKANYINTLIKSLRSFFKYLVTEEYMPMNIMSKIQLLKEDTEVIKTFTDDEVVKMI 121

Query: 184 SFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239
             +       ++ ++     + +G+R S+      + + +    IK  K        +  
Sbjct: 122 DSYDFKTYLNARNKVIMAMFVDTGIRMSELINLQSEWVYDTNIRIK-GKGSKWRFAPISL 180

Query: 240 GFMKLL-----------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA----GVNK 284
              K +               +  + +F++   + +   Q     K    +A     +  
Sbjct: 181 MLKKYMIRYERIKTKYFEKKALEHDNYFLSRAGKPICTVQIENIVKNAGLRADVRKDIRC 240

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
           S H +R ++   +   G   +      G + +   + Y +G +   +     +
Sbjct: 241 SPHTLRHYAIQANLRNGLDLYSCSKIAGHENIQVTKRYLQGLETENILEMAQK 293


>gi|314923769|gb|EFS87600.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL001PA1]
 gi|314966217|gb|EFT10316.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL082PA2]
 gi|315095107|gb|EFT67083.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL060PA1]
 gi|315104336|gb|EFT76312.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL050PA2]
 gi|327328115|gb|EGE69884.1| putative tyrosine recombinase XerC [Propionibacterium acnes
           HL103PA1]
          Length = 300

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 42/277 (15%), Positives = 93/277 (33%), Gaps = 27/277 (9%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRK---SGDFDYRKITTKHIRSGVESRKHTPS 131
           + ++         + N+   + +    ++      GD    +I    +R+ +   +   +
Sbjct: 7   VEDFCDHLLALRRSPNTIRGYRADLIDLMSHAYSHGDDILGRIGISQVRAWLADTRVAGA 66

Query: 132 SAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI---------RPWTKEDM 179
           SA    +  ++ RV F+WA  +  V+ +P  ++   K                   +   
Sbjct: 67  SAATMQRRWSAARVFFRWAANEGLVSADPTATLNSVKVPKRLPATLGVDQARHILDEAVA 126

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELP 238
           Q        G++     E L   GLR  + C   +  +  +  ++K T K     TV + 
Sbjct: 127 QARHDESPHGARDAAILEVLYGGGLRVGELCGLDLGDVDRSRHTVKVTGKGDKERTVPMG 186

Query: 239 DGFMKLLAMT---------PIGKETFFINNDKQKMNATQFSIWFK--AKATKAGVNKSAH 287
              ++ +            P   +  F+    ++++            +A     +   H
Sbjct: 187 APALRAIDTWLPRREEWVGPHSGQALFLGERGRRIDQRVVRRVVHTHLRAEPDSPDLGPH 246

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           G+R   AT   + GA    +    G K++   + YT 
Sbjct: 247 GLRHAMATHLLEGGADLRTVQDMLGHKSLATTQIYTH 283


>gi|116252427|ref|YP_768265.1| integrase/recombinase protein [Rhizobium leguminosarum bv. viciae
           3841]
 gi|116255538|ref|YP_771371.1| putative integrase/recombinase protein [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115257075|emb|CAK08169.1| putative integrase/recombinase protein [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115260186|emb|CAK03290.1| putative integrase/recombinase protein [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 292

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 43/268 (16%), Positives = 94/268 (35%), Gaps = 23/268 (8%)

Query: 74  LISEYRKSAHWGSLAVNSRISFE---SYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
           L     +     + ++N+++++    S F +   KS D   R+    +       +K  P
Sbjct: 4   LRQRMSEDMQVRNFSLNTQLAYLQQVSLFARYFSKSPDLLGREDVRIYQVYLANEKKLAP 63

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           SS    ++++R L+K  + +++V   P   +  PK+  +     + +++Q F     +  
Sbjct: 64  SSIHTAISALRFLYKVTLERDWV---PEEVLPLPKKPQKLPIILSPDEVQHFLGCVLDPK 120

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLA-- 246
                      +GLR S++ +     + +    ++    K      V L    +++L   
Sbjct: 121 H-HAILTTCYAAGLRISEAVQLKPTDIDSQRMVVRVEQGKGQKDRYVMLSPKLLEILRDY 179

Query: 247 -MTPIGKETFFINND-KQKMNATQFSIWFKAKATKA------GVNKSAHGVRKFSATISA 298
                 K   F  +   Q +              KA          + H +R   A    
Sbjct: 180 WKMRRPKAWLFPGDRAGQPITRDAVG----EACAKAHNLSRLSKPVTPHSLRHAFAVHLL 235

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGA 326
           +AGA    +    G +++     Y + A
Sbjct: 236 EAGADVRTIQLLLGHRSLATTAHYLRIA 263


>gi|254975124|ref|ZP_05271596.1| phage integrase family site specific recombinase [Clostridium
           difficile QCD-66c26]
 gi|255092513|ref|ZP_05321991.1| phage integrase family site specific recombinase [Clostridium
           difficile CIP 107932]
 gi|255306536|ref|ZP_05350707.1| phage integrase family site specific recombinase [Clostridium
           difficile ATCC 43255]
 gi|255314251|ref|ZP_05355834.1| phage integrase family site specific recombinase [Clostridium
           difficile QCD-76w55]
 gi|255516930|ref|ZP_05384606.1| phage integrase family site specific recombinase [Clostridium
           difficile QCD-97b34]
 gi|255650033|ref|ZP_05396935.1| phage integrase family site specific recombinase [Clostridium
           difficile QCD-37x79]
 gi|260683181|ref|YP_003214466.1| prophage lambdaba04, site-specific recombinase [Clostridium
           difficile CD196]
 gi|260686779|ref|YP_003217912.1| prophage lambdaba04, site-specific recombinase, phage integrase
           family [Clostridium difficile R20291]
 gi|306519568|ref|ZP_07405915.1| prophage lambdaba04, site-specific recombinase, phage integrase
           family protein [Clostridium difficile QCD-32g58]
 gi|260209344|emb|CBA62764.1| prophage lambdaba04, site-specific recombinase, phage integrase
           family [Clostridium difficile CD196]
 gi|260212795|emb|CBE03954.1| prophage lambdaba04, site-specific recombinase, phage integrase
           family [Clostridium difficile R20291]
          Length = 376

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 56/360 (15%), Positives = 126/360 (35%), Gaps = 45/360 (12%)

Query: 15  RTRHGKIIYYFRKG--HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           R R  K  YYF  G   G+R ++     +T   A  +                +   +L 
Sbjct: 6   RKRSNKWYYYFDLGIVEGKRKKVERVGGNTKKEAEKALREALNEYENSGIVFEESNISLS 65

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
             +  + K     +   N++ S+    +  I  K G +  + +T   +++ +  +K+   
Sbjct: 66  DYLDFWYKEYVLLNCKYNTQESYRINIEKHIKPKLGAYKVKALTPAILQNFIN-KKYKED 124

Query: 132 SAIQFLTSMRVLFKWAVRQ-----EYVAINPCLSVERPKRKTE----GIRPWTKEDMQQF 182
            +   L  ++ +   +++      +++  NP   V  PK K++     ++  T E+  Q 
Sbjct: 125 YSQNTLQVLKAILHRSLKSAVHPYKHIRENPMQYVSIPKTKSKTETNKVKTITLEEFNQI 184

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----------------NNIFSIKT 226
            + + + S  R+      ++G+R  +       ++                 N +F +  
Sbjct: 185 LNIFPQDSFQRIVLLIGFHTGMRRGEIIALKWDNIDLDNKTITVKHTLIKKPNGMFELGQ 244

Query: 227 QKT-GTIITVELPDGFMKLLA---------MTPIGKETF-----FINNDKQKMNATQFSI 271
            KT  +  T+   D  +K L              G+  F         + Q++N      
Sbjct: 245 PKTESSCRTIFTGDTLIKALKEHKLYQKKMKLKYGEFYFDSDWVCTKENGQQVNTHTLDT 304

Query: 272 WFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIR 330
             +        +   H +R   AT+  + GA   ++    G   +    +TY+   D+++
Sbjct: 305 IVRQIRVALNNDFHFHSLRHAHATLLLENGANIKDIQNRLGHSQLSTTMDTYSHVTDKMK 364


>gi|294776711|ref|ZP_06742176.1| integron integrase [Bacteroides vulgatus PC510]
 gi|294449455|gb|EFG17990.1| integron integrase [Bacteroides vulgatus PC510]
          Length = 376

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 59/297 (19%), Positives = 103/297 (34%), Gaps = 21/297 (7%)

Query: 40  ESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF 99
           E+TFI    SAL  + PK+    SP   P         Y ++      + ++  ++ +YF
Sbjct: 70  ETTFID--YSALKNTQPKKSGKTSPAIPPG--------YAETLRQLRYSEHTVRAYTTYF 119

Query: 100 DQIIRKSGDFDYRKITTKHIRSGVESRKHTP--SSAIQFLTSMRVLFKWAVRQEYVAINP 157
            +  +     + R I  + I + +     T   SS  Q L    + F +           
Sbjct: 120 KEFQQYFAGRNLRYIRPEEINAYIVHLIDTRGISSCQQNLRINSIKFYFEKVLGLERK-- 177

Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217
           C  V+R KR+       +KE+++          +    F  L  +GLR S+        +
Sbjct: 178 CYEVKRAKRERTLPDVLSKEEIKSILDATGPDIRLFCMFSLLYSAGLRISELLDLKPHDI 237

Query: 218 Q--NNIFSIKTQKTGTIITVELPDGFMKLL---AMTPIGKETFFINNDKQKMNATQFSIW 272
               ++  ++  K        L    ++ L   A     +E  F     +    +  S  
Sbjct: 238 NVSRSLIRVRQGKGRKDRYTLLSKPLVRKLTEYAKLYKPQEWLFERYKGEPFTESIVSKK 297

Query: 273 FKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
            K  A +AG+ K    H +R   AT   + G     +    G   +   E Y   AD
Sbjct: 298 LKEAAKEAGITKRVYPHLLRHSFATHLIEQGTDLKIVKELLGHNQLKTTEMYVHIAD 354


>gi|168205361|ref|ZP_02631366.1| tyrosine recombinase [Clostridium perfringens E str. JGS1987]
 gi|170663182|gb|EDT15865.1| tyrosine recombinase [Clostridium perfringens E str. JGS1987]
          Length = 431

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 49/285 (17%), Positives = 100/285 (35%), Gaps = 43/285 (15%)

Query: 85  GSLAVNSRISFESYFDQI--------------------IRKSGDFDYRKITTKHIRSGV- 123
              + N+   ++S  + +                    IR   D   + IT   + + + 
Sbjct: 133 KGRSPNTVKGYKSNLNLLFKYLVSLKENTPGTDIENVCIRNVDDTFIKNITLMDLYNFLS 192

Query: 124 ---ESRKHTPSSAIQFLTSMRVLFKWA-VRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
              E RK+   S  + + +++  F +   + + +  N  L +E PK +       T +  
Sbjct: 193 YVDEVRKNGSYSRARLVAAIKSFFLFLNSKLKIIDENIALELEFPKIEKRLPVYLTLDQA 252

Query: 180 QQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
           +   +   +      +    F   L  G+R S+ C   +  ++ ++ +I   K     T+
Sbjct: 253 KAVLNSMDKTKRYYYRDYCIFTLFLNCGMRLSELCGIKISDIRGDLLTII-GKGNKQRTI 311

Query: 236 ELPDGFMKLLA---------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---N 283
            L    +K +           TP   +  F++   ++++        K     AG     
Sbjct: 312 YLNSECLKSIHDYLNVRGRGNTPEEDKYLFLSRIDKRISNRGVEKLVKKHIENAGFTDKK 371

Query: 284 KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGAD 327
            + H +R  +ATI    G A    L A  G +++   E YT   D
Sbjct: 372 YTPHKLRHSAATILYKYGNADIRSLQAILGHESIATTELYTHVDD 416


>gi|269122520|ref|YP_003310697.1| integrase family protein [Sebaldella termitidis ATCC 33386]
 gi|268616398|gb|ACZ10766.1| integrase family protein [Sebaldella termitidis ATCC 33386]
          Length = 344

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 43/328 (13%), Positives = 108/328 (32%), Gaps = 23/328 (7%)

Query: 27  KGHGRRIRLPYPHESTFIPAYM---------SALTGSTPKREYINSPRKKPTTLKWLISE 77
           +     +R+           Y           A+           +  +   T   L  +
Sbjct: 17  RRKPFAVRITKGWTDEGKRIYKYLSYHITRKEAMQALASYNANPYNVDESNITFGELYEK 76

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFL 137
           +  + H+ +L+ N+   +E    +  +   D   + I   H+++ ++       +     
Sbjct: 77  W-STRHYKNLSKNTIKGYE-TCSKYCKPIFDMKIKDIKIVHLQNLIDGLNKNHGTLKMMK 134

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP-WTKEDMQQFKSFWSEGSQPRLAF 196
             ++ +F +A+  + +  +    ++  K  T   +  +  +++        +        
Sbjct: 135 NILKQIFGYAMELDIIQKDYSRFLKIGKHVTIKQKSIFNDKEIAVLWKNLDKYQYIDTIL 194

Query: 197 EFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKT--GTIITVELPDGFMKLLA-MTPIG 251
             ++Y+G+R  +      + +        ++T KT  GT   + +     +L+       
Sbjct: 195 -IMIYTGMRVGEMLNLRKEDINLIEQTIIVRTSKTEAGTNRIIPIHPRIKELIQNRYKNS 253

Query: 252 KETFFIN--NDKQKMNATQFSIW-FKAKATKAGVNKSAHGVRKFSATISADAGATAHELM 308
                I    ++  ++   + I  F     +  +  + H  R   AT   DAG  A  + 
Sbjct: 254 NSDHLITGLQNRNSISYVYYDIRLFNPIMDELNIKHTPHDCRHTFATRLNDAGGNATAIK 313

Query: 309 ATYGWKTVDQAET-YT-KGADRIRLGIK 334
              G ++    E  YT K    +R  I+
Sbjct: 314 KMIGHESFALTEKVYTHKKVSELRKAIE 341


>gi|227813261|ref|YP_002813270.1| tyrosine recombinase XerC [Bacillus anthracis str. CDC 684]
 gi|227007518|gb|ACP17261.1| tyrosine recombinase XerC [Bacillus anthracis str. CDC 684]
          Length = 299

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 44/272 (16%), Positives = 97/272 (35%), Gaps = 26/272 (9%)

Query: 85  GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLT 138
            + +  +  S+++  +  +    + G   +  IT   +R  +      K    S  + ++
Sbjct: 18  RNYSKYTIASYQNDLEHFVQFMEREGISSFLDITYADVRLYLTTLHDEKLARKSVARKVS 77

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK----SFWSEGSQPRL 194
           S+R L+++ +R+ Y   NP      PK++    +    E++++      +    G + + 
Sbjct: 78  SLRSLYRFLMREGYRKDNPFALASLPKKELSIPKFLYAEELEELFEASDTETPLGQRNQA 137

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE------------LPDGF 241
             E +  +G+R S+     +  +   + +I    K      +             + +G 
Sbjct: 138 LLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQRYIPFGSYAQDALITYIENGR 197

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
            +L   T       F+N     + +            KA +    S H +R   AT   D
Sbjct: 198 KQLAEKTEEQSHMVFLNAKGTPLTSRGVRYVLNELIKKASLTMRISPHILRHTFATHMLD 257

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            GA    +    G + +   + YT    + RL
Sbjct: 258 EGADLRTVQELLGHENLSTTQIYTH-VSKERL 288


>gi|148550339|ref|YP_001270441.1| site-specific tyrosine recombinase XerC [Pseudomonas putida F1]
 gi|166918895|sp|A5WAU7|XERC_PSEP1 RecName: Full=Tyrosine recombinase xerC
 gi|148514397|gb|ABQ81257.1| tyrosine recombinase XerC subunit [Pseudomonas putida F1]
          Length = 299

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 35/259 (13%), Positives = 89/259 (34%), Gaps = 19/259 (7%)

Query: 85  GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLT 138
             ++ ++ + +    +++    ++ G  +++ +  + +R  +        +P S  + L+
Sbjct: 16  RQVSEHTLLGYRRDLEKVIAYCKEHGIAEWQALQIQQLRQLIARLHHHGQSPRSLARLLS 75

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW-TKEDMQQFKSFWS---EGSQPRL 194
           ++R L+++  R+     +P   +  PK +    +   T   +Q             + + 
Sbjct: 76  AVRGLYRYLNREGLCQHDPATGLSAPKGERRLPKVLDTDRALQLLDGGVDDDFIARRDQA 135

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPI--- 250
             E    SGLR S+     + HL      ++   K G    + +     + L        
Sbjct: 136 ILELFYSSGLRLSELTNLDLDHLDLAAGLVQVLGKGGKARVLPVGRKAREALQAWYRLRG 195

Query: 251 ----GKETFFINNDKQKMNATQFSIWFKAK-ATKAGVNKSAHGVRKFSATISADAGATAH 305
                    FI     +++     +  KA    + G +   H +R   A+   ++     
Sbjct: 196 IGNPRDRAVFITRQGNRISPQAVRLRVKAAGERELGQHLHPHMLRHSFASHVLESSQDLR 255

Query: 306 ELMATYGWKTVDQAETYTK 324
            +    G   +   + YT 
Sbjct: 256 AVQEMLGHADISTTQIYTH 274


>gi|330870011|gb|EGH04720.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           aesculi str. 0893_23]
 gi|330892013|gb|EGH24674.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           mori str. 301020]
          Length = 290

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 37/259 (14%), Positives = 93/259 (35%), Gaps = 19/259 (7%)

Query: 85  GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIR---SGVESRKHTPSSAIQFLT 138
             ++ ++  ++     ++    +K+    +  +  +H+R   +    +  +  S  + L+
Sbjct: 7   RQVSPHTLEAYRRDLGKVLAYCQKAQLSSWNDLDIQHLRSFTARQHQQGQSSRSLARMLS 66

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRL 194
           ++R  +K+  R+     +P   +  PK +    +    +   Q      E      + + 
Sbjct: 67  AVRGFYKYLNREGICQHDPANGLSPPKGERRLPKTLDTDRTAQLLDGGVEDDFLAHRDQA 126

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV--------ELPDGFMKLLA 246
             E L  SGLR S+     +  L      ++    G+   V        +  + ++ L A
Sbjct: 127 ILELLYSSGLRLSELTGLNLDQLDLRDGLVQVLGKGSKTRVLPVGSKARQALEIWLPLRA 186

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAK-ATKAGVNKSAHGVRKFSATISADAGATAH 305
           +T    +  F++   +++      +  KA    + G N   H +R   A+   ++     
Sbjct: 187 LTNPQDDAVFVSQQGKRLGPRTIQVRLKAAGERELGQNLHPHMLRHSFASHLLESSQDLR 246

Query: 306 ELMATYGWKTVDQAETYTK 324
            +    G   +   + YT 
Sbjct: 247 AVQELLGHADIKTTQIYTH 265


>gi|312126544|ref|YP_003991418.1| integrase family protein [Caldicellulosiruptor hydrothermalis 108]
 gi|311776563|gb|ADQ06049.1| integrase family protein [Caldicellulosiruptor hydrothermalis 108]
          Length = 373

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 44/303 (14%), Positives = 100/303 (33%), Gaps = 39/303 (12%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSG----VE 124
           T   L+  +  +     +++++  S+ S     I    G+++  K+T   ++      + 
Sbjct: 62  TFGELLDLWLNTVAKNRVSLSTFQSYSSSIALHIKPFLGEYELGKLTPMDLQKYYQHVMT 121

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
            +  + + A+     +     +AV+ + +  NP   V+ PK++      W +E +++   
Sbjct: 122 EKGLSSTLALYHHRIIHQALDYAVKMDMLEKNPADYVDPPKKRNYQPSIWDEETIKKALE 181

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT--------------- 229
            +  G+  R+     +Y+G+R  +      + +      I   KT               
Sbjct: 182 IFK-GTNIRIPVLLAIYTGMRIGEIAALKWEDINLEQGYITVNKTFMKINGQTYIKEKAE 240

Query: 230 --GTIITVELPDGFMKLLAMTPIG-------------KETFFIN-NDKQKMNATQFSIWF 273
              +   V + +  +  L                    E F     D +  +    +  F
Sbjct: 241 NKNSYRIVAISNQVVSELKEWKAKQEKLKEELKELYHDEGFVCTFEDGRVQDPKYITKVF 300

Query: 274 KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRL 331
           +    K  + K   H +R   A+I    G     +    G  T+      Y+   D  R 
Sbjct: 301 QKTIEKHKLPKIRFHDLRHTHASILLKHGVDPKHISDRLGHSTITTTLNIYSHVFDEKRK 360

Query: 332 GIK 334
            + 
Sbjct: 361 KVA 363


>gi|212633304|ref|YP_002309829.1| Phage integrase:Phage integrase,SAM-like protein [Shewanella
           piezotolerans WP3]
 gi|212554788|gb|ACJ27242.1| Phage integrase:Phage integrase,SAM-like protein [Shewanella
           piezotolerans WP3]
          Length = 304

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 38/276 (13%), Positives = 94/276 (34%), Gaps = 21/276 (7%)

Query: 67  KPTTLKWLIS--EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIR 120
              T  WLI    Y  +     ++  +  ++     ++       D     +  + + I 
Sbjct: 6   SSGTSPWLIDFERYLTTER--QVSAYTVRNYLFELKRVEAVFAANDDWLELKHESLQAII 63

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR---PWTKE 177
           + +  +  +P S    L+S++  F + +R++ +++NP L++  PK+     +     +  
Sbjct: 64  AKLHRKGLSPRSLSLTLSSIKQFFDFLLREQQISVNPALNLSAPKQAKPLPKNMDVDSVT 123

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVE 236
            + +  +      + +   E    SGLR ++     V  ++ +   +K    G+    V 
Sbjct: 124 HLLEIDANDPLSYRDKAIMELFYSSGLRLAELAALNVTDIKFSQAQVKVMGKGSKERIVP 183

Query: 237 LPDGFMKLL-------AMTPIGKETFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSAH 287
           +    +  +          P   +  F+    +++                   V    H
Sbjct: 184 IGKLALTAISQWLDIKRDIPCEDDALFVTAKGRRLAHRSIQARLAKWGQEQALSVKVHPH 243

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
            +R   AT   ++ A    +    G   +   + YT
Sbjct: 244 KLRHSFATHMLESSADLRAVQELLGHANLSTTQVYT 279


>gi|188997103|ref|YP_001931354.1| integrase family protein [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188932170|gb|ACD66800.1| integrase family protein [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 297

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 49/285 (17%), Positives = 98/285 (34%), Gaps = 28/285 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK---HTPSSAIQFLTSMR 141
              + N+  ++   F+Q I+  GD +  +IT   I     + +      S+  + L S+ 
Sbjct: 15  ADKSPNTVKNYRVDFNQFIKIVGDKNINEITKADIAKFRMTLQMQNRKSSTIARKLASIN 74

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201
            LF++ +  E V+ +P     RPK   +     + E++++         Q +      L 
Sbjct: 75  SLFQYLMDLELVSSSPITKSHRPKVSQKIPSALSNEEVKKLIDALDS-IQDKAIVVLFLT 133

Query: 202 SGLRCSDSCRAGVQHL--------------------QNNIFSIKT-QKTGTIITVELP-D 239
           +GLR S+       ++                    + +I  I+   K      V +   
Sbjct: 134 TGLRSSELLSIKKSNIIVERNGQTFSIDRLIEGEVKEGDIAYIRVVGKGDKEREVPITGK 193

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISAD 299
               L+       E    N     ++        K    K  +    H +R  +AT++  
Sbjct: 194 PLEILVQYLKSINEFLDDNEYIFPISYHLLWRKIKNIGKKLAITLHPHKLRHTAATMALS 253

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
           +GA    +    G  +      Y K   +  L  K ++ +S  +D
Sbjct: 254 SGAELRVIQELLGHASPVTTARYAKVGQKQLL--KATKALSENID 296


>gi|325300266|ref|YP_004260183.1| integrase family protein [Bacteroides salanitronis DSM 18170]
 gi|324319819|gb|ADY37710.1| integrase family protein [Bacteroides salanitronis DSM 18170]
          Length = 368

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 33/263 (12%), Positives = 88/263 (33%), Gaps = 19/263 (7%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHTPSSA 133
           Y +       + ++  ++ +YF   +      +  ++    I   +      +K + S  
Sbjct: 96  YLELLEQKRYSPSTIKTYRAYFSDFVEYHKGRNIDRLKVADINRYILYLVNEKKISVSQQ 155

Query: 134 IQFLTSMRVLFKWAV--RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
              + +++  ++     +++Y        + R K         +K ++++     S   +
Sbjct: 156 NMRINAIKFYYEQVKGGKRQYYG-----GITRAKEYKTVPEVLSKNEIKRILDQLS-NIK 209

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-----ITVELPDGFMKLLA 246
                  +  +GLR S+      + + + + S++    G       ++ +L +   +   
Sbjct: 210 HHCMISLVYSAGLRRSELLNLTPKDINSEMMSVRIMGKGKKCRYSLLSPKLLEELRRYFR 269

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHG--VRKFSATISADAGATA 304
                K  F      +  +A+      K  A +AG+    H   +R   AT   + G   
Sbjct: 270 EYRPKKWLFEGETPGEPYSASALVKVLKEAAQRAGIKHRVHVHMLRHSFATHLLEQGTDL 329

Query: 305 HELMATYGWKTVDQAETYTKGAD 327
           H +    G   +     Y   ++
Sbjct: 330 HTIQELLGHNDIKTTAIYLHTSN 352


>gi|257482612|ref|ZP_05636653.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 290

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 37/259 (14%), Positives = 92/259 (35%), Gaps = 19/259 (7%)

Query: 85  GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIR---SGVESRKHTPSSAIQFLT 138
             ++ ++  ++     ++    +K+    +  +  +H+R   +    +  +  S  + L+
Sbjct: 7   RQVSPHTLEAYRRDLGKVLAYCQKAQLSSWNDLDIQHLRSFTARQHQQGQSSRSLARMLS 66

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRL 194
           ++R  +K+  R+     +P   +  PK      +    +   Q      E      + + 
Sbjct: 67  AVRGFYKYLNREGICQHDPANGLSPPKGDRRLPKTLDTDRTAQLLDGGVEDDFLAHRDQA 126

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV--------ELPDGFMKLLA 246
             E L  SGLR S+     +  L      ++    G+   V        +  + ++ L A
Sbjct: 127 ILELLYSSGLRLSELTGLNLDQLDLRDGLVQVLGKGSKTRVLPVGSKARQALEIWLPLRA 186

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAK-ATKAGVNKSAHGVRKFSATISADAGATAH 305
           +T    +  F++   +++      +  KA    + G N   H +R   A+   ++     
Sbjct: 187 LTNPQDDAVFVSQQGKRLGPRTIQVRLKAAGERELGQNLHPHMLRHSFASHLLESSQDLR 246

Query: 306 ELMATYGWKTVDQAETYTK 324
            +    G   +   + YT 
Sbjct: 247 AVQELLGHADIKTTQIYTH 265


>gi|167752437|ref|ZP_02424564.1| hypothetical protein ALIPUT_00681 [Alistipes putredinis DSM 17216]
 gi|167660678|gb|EDS04808.1| hypothetical protein ALIPUT_00681 [Alistipes putredinis DSM 17216]
          Length = 309

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 45/277 (16%), Positives = 94/277 (33%), Gaps = 31/277 (11%)

Query: 77  EYRKSAHWGSLAVNSRISFES----YFDQIIRKSGDFDYRKITTKHIRSGVESRKHT--- 129
           +Y  +      +  +  ++      + + +     DFD R+IT + +R  +  R  T   
Sbjct: 7   QYLATVR--RFSPLTVQNYRRDVTNFLEWLDVPEADFDPRRITVEDVREWIVHRTETKHL 64

Query: 130 -PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
             +S  + L+S+R  F++  R   +       +   K             M+        
Sbjct: 65  GAASMNRELSSLRSFFRYLHRTGRIDKEVMYRIHALKTSRRIPAFVPSTRMEGILDELDR 124

Query: 189 GS--------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELP 238
            S        +  L        GLR ++           +  ++K +  G    I   LP
Sbjct: 125 ESESPEFKFVRNSLIVLLFYSCGLRLAELVGIDRDDFSGDYTALKVRGKGDKERIVPILP 184

Query: 239 DGFMKLLA---------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAH 287
               K+L          +    ++  F+N   ++++ +      +++  + GV   KS H
Sbjct: 185 PVREKILHYLDEIDRQGICISKEKALFLNQQGKRISRSTVYRTVQSQLRQGGVQGKKSPH 244

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            +R   AT   + GA    +    G  ++   + YT 
Sbjct: 245 VLRHTFATELLNNGADMRAIQELLGHASLQATQVYTH 281


>gi|256420742|ref|YP_003121395.1| integrase family protein [Chitinophaga pinensis DSM 2588]
 gi|256035650|gb|ACU59194.1| integrase family protein [Chitinophaga pinensis DSM 2588]
          Length = 314

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 47/268 (17%), Positives = 94/268 (35%), Gaps = 33/268 (12%)

Query: 90  NSRISFESYFDQIIRKSGDFDYRKITTKHIR---SGVESRKHTPSSAIQFLTSMRVLFKW 146
             +     +F  +  + GD   + I+  H+R   + +        S  + +++++  FK+
Sbjct: 29  AYQQDLTQFFIFLRSQYGDVSLQGISHLHVRTWLAWLMEEGIVAKSVNRKISTLKSFFKY 88

Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS---------------EGSQ 191
           A+R   V  +P   V  PK          ++ M+  +   S               EG  
Sbjct: 89  AMRHGVVVTSPMTKVTAPKTGKRLPGFIDEKGMEAVEDNRSMRRGQEGRPIFADDLEGKT 148

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPI 250
            RL FE L ++G+R S+      +H+  +  ++K   K      + +       +    +
Sbjct: 149 HRLIFELLYHTGIRLSELIGLQERHVDISNLTLKVLGKGNKERIIPISKNLRDEIKGYRV 208

Query: 251 ---------GKETFFIN-NDKQKMNATQFSIWFKAKATKAGVN----KSAHGVRKFSATI 296
                     KE   +N    +K+         K   T   +     +S H +R   AT 
Sbjct: 209 MRDKALEMPDKEVLLVNPRSGKKLYPRYVYNVVKGYLTDHEITTISRRSPHILRHTFATH 268

Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324
             + GA  + +    G  ++   + YT 
Sbjct: 269 LTNNGADLNAVKELLGHASLASTQVYTH 296


>gi|325125940|gb|ADY85270.1| Tyrosine recombinase xerC [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 295

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 40/264 (15%), Positives = 102/264 (38%), Gaps = 24/264 (9%)

Query: 85  GSLAVNSRISFESYF---DQIIRKSGDFD-YRKITTKHIRSGVES--RKHTPSSAIQFLT 138
            S +  + ++++       +  +++G F  + +I+ + +   + +  +K   S+  + L+
Sbjct: 15  RSYSPKTVLAYQKDLAATKKFWQENGGFPGWDQISRRDLEIYLLATGQKLASSTLSRKLS 74

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG----SQPRL 194
           S++  +++  R+  V  +P ++++  + K +    + ++++ Q     ++G     + R 
Sbjct: 75  SLKSFYRFLTRRGLVKADPTVAIQLRRGKKKLPEFFYQDEVGQVIRSLNDGKPLTVRNRA 134

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLL-----AMT 248
                  +G+R S+     ++ L   N   +   K      V       K L     A  
Sbjct: 135 IVALFYATGMRLSELTDLKIKQLDLENGMILVHGKGNKDRYVFFDQESKKYLEEYLQAAR 194

Query: 249 P------IGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADA 300
           P            F+N   + +++   +   +    KAG+      H +R   AT   + 
Sbjct: 195 PSLLKNEPDTGAVFLNKLGRPISSRGIAKAVQQIFQKAGLTAGAHPHELRHSFATAMLNN 254

Query: 301 GATAHELMATYGWKTVDQAETYTK 324
           GA    +    G + +   + YT 
Sbjct: 255 GADLRSVQELLGHEDLSTTQIYTH 278


>gi|20807762|ref|NP_622933.1| integrase [Thermoanaerobacter tengcongensis MB4]
 gi|34222924|sp|Q8RAB1|XERDL_THETN RecName: Full=Tyrosine recombinase xerD-like protein
 gi|20516317|gb|AAM24537.1| Integrase [Thermoanaerobacter tengcongensis MB4]
          Length = 290

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 38/248 (15%), Positives = 91/248 (36%), Gaps = 19/248 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
             L+ N+  S+    +Q +    +        +K T  +    ++ +  + ++  + L+S
Sbjct: 17  KRLSKNTLESYSRDVEQFLTYMNEHGINFCSAKKSTIVNYLYFLKQQGKSQATISRALSS 76

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195
           ++  + +   ++ +  +P   +  PK + +     T E +    SF      +G + +  
Sbjct: 77  IKAFYHYLFAKKKIEEDPSYGINAPKVEKKEPVTLTVEQVDMLLSFDFGKDEKGLRDKAL 136

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA------MTP 249
            E +  SGL+ S+     ++ +      I  + +G    + +    +  L         P
Sbjct: 137 IELMYASGLKVSEVISLKIEDVNLASGYIVVR-SGKERVIPIGSYAVAALQEYIEKGRKP 195

Query: 250 IGKE-TFFINNDKQKMNATQFSIWFKAKATKA--GVNKSAHGVRKFSATISADAGATAHE 306
              E   F+N   +++         K  A K   G+  + + +RK  A      GA    
Sbjct: 196 RKGEKALFLNLRGKRLTRQGCWKIIKEYADKISPGLPLTPNILRKSFAQHMLQNGADLKT 255

Query: 307 LMATYGWK 314
           +    G++
Sbjct: 256 VQEMLGYE 263


>gi|307545892|ref|YP_003898371.1| site-specific recombinase, phage integrase family [Halomonas
           elongata DSM 2581]
 gi|307217916|emb|CBV43186.1| site-specific recombinase, phage integrase family [Halomonas
           elongata DSM 2581]
          Length = 352

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 48/290 (16%), Positives = 105/290 (36%), Gaps = 27/290 (9%)

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119
           YI     +  TL+  +  Y       +   +++ S     + +I   G +    +T + I
Sbjct: 50  YIQRSASERMTLEAALKRYLADVT-PTKKPSTQKSERHKANTLIEHLGKYSLAALTPELI 108

Query: 120 RSGVESR------KHTPSSAIQF---LTSMRVLFKWAVRQEY---VAINPCLSVERPKRK 167
            +  ++R      +  P SA      L  +  L+  A+ QE+   +  NP  ++ +P   
Sbjct: 109 ANFRDTRLNSLGRRGQPISANTVRLELALLGHLYTVAI-QEWGLGLTYNPVQNIRKPSPG 167

Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFE--FLLYSGLRCSDSCRAGVQ--HLQNNIFS 223
               R  + ++ ++  +   + S P LA+     L +G+R S+          ++  +  
Sbjct: 168 EGRDRRLSADEEKRLFAVLRQHSNPMLAWIARIALETGMRSSEILTLTRSQVDVKRRVVR 227

Query: 224 IKTQKTGTIITVELPDGFMKLLAMT------PIGKETFFINNDKQ--KMNATQFSIWFKA 275
           +   K      V L     ++          P   +  F     +  K     ++  +  
Sbjct: 228 LTDTKNNEARLVPLTQAATEVFKQALNNPVRPFDCDLVFFGEPGKDGKRGPYAYTKLWNQ 287

Query: 276 KATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              +AG++    H +R  + +   +AG +  E+    G K++     YT 
Sbjct: 288 AKKQAGLDDFRFHDLRHEAVSRLVEAGLSDQEVATISGHKSMQMLRRYTH 337


>gi|323524461|ref|YP_004226614.1| tyrosine recombinase XerC [Burkholderia sp. CCGE1001]
 gi|323381463|gb|ADX53554.1| tyrosine recombinase XerC [Burkholderia sp. CCGE1001]
          Length = 307

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 48/290 (16%), Positives = 92/290 (31%), Gaps = 31/290 (10%)

Query: 73  WLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KH 128
             I+ Y  +  H   L+ ++   +    D++   +     + +T   IR  V        
Sbjct: 5   DFIAAYLSNLEHERRLSAHTLRGYAHELDELRLLTKGRPLQSLTAVDIRGAVARAHAGGL 64

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS- 187
           T  S    L++ R  ++W   +  +  NP  +V  PK+     +  + +D  +       
Sbjct: 65  TARSISHRLSAWRAFYRWLAGRVDLPANPVATVRAPKQAKALPKALSVDDANRLMESPPA 124

Query: 188 ---EGSQPRLAFEFLLYSGLRCSDSCRAGVQ------HLQNNIFSI------KTQKTGTI 232
              EG +     E    SGLR S+     V+      H       +         K    
Sbjct: 125 ASAEGLRDHAMLELFYSSGLRLSELVGLDVRFADVDGHRSAGWLKLDSAEVEVLGKGNQR 184

Query: 233 ITVELPDGFMKLLAMTPIGKE--------TFFINNDKQKMNATQFSIWFKAKATKAGVNK 284
             V +    ++ L      ++          F++    +++        K  A  AG+  
Sbjct: 185 RIVPVGSKALEALNAWLAVRDEMVKHDPHPLFLSARGNRLSPNVVRERVKRAALVAGIPA 244

Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
               H +R   AT    +      +    G  ++   + YT G D   L 
Sbjct: 245 NVHPHVLRHSFATHVLQSSGDLRAVQELLGHASITATQVYT-GLDFQHLA 293


>gi|28378506|ref|NP_785398.1| integrase/recombinase [Lactobacillus plantarum WCFS1]
 gi|254556720|ref|YP_003063137.1| integrase/recombinase [Lactobacillus plantarum JDM1]
 gi|300767452|ref|ZP_07077364.1| tyrosine recombinase XerC [Lactobacillus plantarum subsp. plantarum
           ATCC 14917]
 gi|308180663|ref|YP_003924791.1| integrase/recombinase [Lactobacillus plantarum subsp. plantarum
           ST-III]
 gi|28271342|emb|CAD64247.1| integrase/recombinase [Lactobacillus plantarum WCFS1]
 gi|254045647|gb|ACT62440.1| integrase/recombinase [Lactobacillus plantarum JDM1]
 gi|300495271|gb|EFK30427.1| tyrosine recombinase XerC [Lactobacillus plantarum subsp. plantarum
           ATCC 14917]
 gi|308046154|gb|ADN98697.1| integrase/recombinase [Lactobacillus plantarum subsp. plantarum
           ST-III]
          Length = 314

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 42/262 (16%), Positives = 93/262 (35%), Gaps = 27/262 (10%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKH---IRSGVESRKHTPSSAIQFLTSMRVLF 144
           A   R   +++ D +    G   Y ++         S +  R  T +S  + ++S+R  +
Sbjct: 24  AAAYREDIQAFNDFLTANGGAKAYTEVDRLDVNVYLSHLYDRHLTRNSIARKVSSLRSFY 83

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ-QFKSFWSE----GSQPRLAFEFL 199
            + V+ +   +NP + V+  K      R + ++++   F++ +++    G++     E L
Sbjct: 84  NFLVKNDLAKLNPFVYVQLKKHAARLPRFFYQKELDVLFQTVYADDSVMGARNAALLEVL 143

Query: 200 LYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLL------AMTPI-- 250
             +G+R S+     +  +  +    +   K      V         L         P+  
Sbjct: 144 YGTGIRLSECVDLQLADVDYDLKMMLIRGKGDKERYVPFGRYAATALQHYETVCRQPVMA 203

Query: 251 ----GKETFFINNDKQKMNATQ----FSIWFKAKATKAGVNKSAHGVRKFSATISADAGA 302
                 +T FIN     +         +   K  +  A ++   H +R   AT   + GA
Sbjct: 204 KYGQTHQTVFINRHGGPITGGGIEYVLNQIVKKSSLTADIH--PHMLRHTFATQMLNNGA 261

Query: 303 TAHELMATYGWKTVDQAETYTK 324
               +    G  ++   + Y  
Sbjct: 262 DLRTVQELLGHTSLSTTQIYAH 283


>gi|298373089|ref|ZP_06983079.1| tyrosine recombinase XerD [Bacteroidetes oral taxon 274 str. F0058]
 gi|298275993|gb|EFI17544.1| tyrosine recombinase XerD [Bacteroidetes oral taxon 274 str. F0058]
          Length = 294

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 42/277 (15%), Positives = 91/277 (32%), Gaps = 27/277 (9%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQI----IRKSGDFDYRKITTKHIRSGVESR-- 126
           ++ EY +   +  + +  +  S+    +Q      R +   D  K     IR  +     
Sbjct: 1   MLEEYLRYLQYEKNYSSRTVSSYRKDINQFTAYYSRINNSTDISKAEIDDIRLWIAELIS 60

Query: 127 --KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
             K T  S  + L+SM+  +K+ +++  +  +P   V  PK        +T++D+    +
Sbjct: 61  VNKITSRSVCRKLSSMKSFYKFLLQKNIIDSSPVDVV-APKIIKSLPVFFTEKDINLLGT 119

Query: 185 FWSEG------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVEL 237
                      ++  L  E    +G+R  +     +  +     +IK   K      V  
Sbjct: 120 DEILPDDSFETARNALMIEIFYQTGIRRMELIELKISDIDFERKTIKVLGKRRKERFVPF 179

Query: 238 PDGFMKLLA--------MTPIGKETFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSAH 287
            +     +               +  F+    +++           +  +       S H
Sbjct: 180 GEALENQIKHYLSIRQKRITTDNDYLFVTKHGRQLYDKAVYNIVTRELGSITTKTKHSPH 239

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            +R   AT   D GA  + +    G  ++   + YT 
Sbjct: 240 TLRHTFATTMLDNGADLNSIKELLGHSSLAATQVYTH 276


>gi|298346742|ref|YP_003719429.1| integrase/recombinase XerD family protein [Mobiluncus curtisii ATCC
           43063]
 gi|298236803|gb|ADI67935.1| integrase/recombinase XerD family protein [Mobiluncus curtisii ATCC
           43063]
          Length = 309

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 53/285 (18%), Positives = 92/285 (32%), Gaps = 31/285 (10%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD------FDYRKITTKHIRSGVE 124
           L +L+ E   S H  +           Y   +I    +          +   + + +G  
Sbjct: 12  LDYLVVERGASPHTVA---AYTRDLRRYITFLIANGVNSLDEVTLPLLESFARALEAGFG 68

Query: 125 SRKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
                 PSSA + + S+R   ++A     V  NP   +   K         T E++Q   
Sbjct: 69  DYAAVAPSSARRAIASVRSWHRYAYETGAVRANPTKGIAPAKVGAHLPTVLTVEEVQTLL 128

Query: 184 SFWSEG-----SQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVE 236
              S        + R   EFL  +G R S++    V  +     I  ++    G    + 
Sbjct: 129 EAASAPGDDNALRDRALLEFLYATGARISEAVNLAVDDINLDEEIPLVRLFGKGRKERLS 188

Query: 237 LPDGFMKL------------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA--GV 282
           +     K             LA     +   F+N   + ++        +A A +A   V
Sbjct: 189 MLGHLAKDALEAYLVRVRPRLAEKGRSQGRVFLNTLGRPLSRQSAWAIIQAAAQRAQITV 248

Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
               H +R   AT     GA    +    G  +V   + YTK ++
Sbjct: 249 PVGPHTLRHCFATHLLQGGADVRAVQELLGHASVTTTQIYTKVSN 293


>gi|163787862|ref|ZP_02182309.1| integrase [Flavobacteriales bacterium ALC-1]
 gi|159877750|gb|EDP71807.1| integrase [Flavobacteriales bacterium ALC-1]
          Length = 296

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 43/259 (16%), Positives = 91/259 (35%), Gaps = 24/259 (9%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLF 144
           A+      E + D +          K+    IR  +        +  +  + ++S+   F
Sbjct: 21  ALAYIRDIEMFQDFLEEHHDSEVLSKVGYSEIREWIVKLVNSGISNRTVNRKISSLNTYF 80

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-----FKSFWSEGSQPRLAFEFL 199
           K+ ++ + + INP    +  K   +   P+++E+++       +    E ++  L  E  
Sbjct: 81  KFLIKTQTIKINPLKQHKALKVGKKVQLPFSEEELKAVLENSIEVHDFESARNHLIIELF 140

Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM---------TP 249
             +G+R  +     +  +      +K   K      + L D  +  +           T 
Sbjct: 141 YATGIRRIELVEITINDIDFGNKQLKVLGKRNKERYIPLIDSLIISIKNYLKYRSQLETI 200

Query: 250 IGKETFFINNDKQK----MNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAH 305
             KE  F+     K    +     + +F   +TKA    S H +R   AT   + GA  +
Sbjct: 201 NDKEVLFLTKKGLKIYEMLVYRIINKYFSEASTKA--KCSPHVLRHSFATHLLNQGADLN 258

Query: 306 ELMATYGWKTVDQAETYTK 324
            +    G  ++   + YT 
Sbjct: 259 AVKELLGHTSLAATQVYTH 277


>gi|126665716|ref|ZP_01736697.1| hypothetical protein MELB17_04087 [Marinobacter sp. ELB17]
 gi|126629650|gb|EBA00267.1| hypothetical protein MELB17_04087 [Marinobacter sp. ELB17]
          Length = 361

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 55/323 (17%), Positives = 102/323 (31%), Gaps = 33/323 (10%)

Query: 32  RIRLPYPHESTFI---PAYMSALTGSTPKRE--YINSPRKKPTTLKWLISEYRKSAHWGS 86
           R++      +TF     A   A+      RE  Y  S   K  TL   I  Y +     +
Sbjct: 21  RLKGRNTESATFDRLTDAKRWAIQTEAAIREGRYFQSAAGKGKTLADAIDRYARD-TLPA 79

Query: 87  LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP------------SSAI 134
           L  + R    +       + G    + I+   I    +  K TP            +S  
Sbjct: 80  LKDSDRRL--AQLQWWRFQIGAVPIKDISASMIAKYRDELKSTPFKTGKTEKQRTDASTN 137

Query: 135 QFLTSMR-VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP- 192
           ++L ++  V+   A   E++A NPC  V+R K      R    ++ ++      + ++  
Sbjct: 138 RYLAALSPVMAAAADEWEWIADNPCRKVKRGKEAKGRTRFLFDDERKRLLEACDKATETP 197

Query: 193 --RLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMT 248
             ++     + +G R S+      + +       +    K G      L    +  +   
Sbjct: 198 ELKIIVLLGITTGARRSELSGLTWRDVDFKRQSVTFHDTKNGETRAAPLVGPALHAMTEW 257

Query: 249 P-----IGKETFF--INNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAG 301
                       F       +         W  A       +   H +R  +A+  A  G
Sbjct: 258 AKVRPLNDSSHVFSGRTEKTKNKPLDFQRAWMTALKRAEVKDFRFHDLRHTAASYLAMNG 317

Query: 302 ATAHELMATYGWKTVDQAETYTK 324
           A   E+    G KT+   + Y+ 
Sbjct: 318 AGLREIAEILGHKTLAMVQRYSH 340


>gi|227539179|ref|ZP_03969228.1| integrase/recombinase [Sphingobacterium spiritivorum ATCC 33300]
 gi|227240861|gb|EEI90876.1| integrase/recombinase [Sphingobacterium spiritivorum ATCC 33300]
          Length = 357

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 42/251 (16%), Positives = 84/251 (33%), Gaps = 10/251 (3%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLF 144
            + + N+  ++   F Q++    D     +    +R+ +    +T   +   L S     
Sbjct: 95  KAYSPNTIKTYMVEFAQLLYVVKDVPVDSLGYDRLRAYILYCINTLKISESQLHSRLNAI 154

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGL 204
           K+   Q     +    + RPKR++   +  +++++++  +      +  L  +     GL
Sbjct: 155 KFYFEQVLHKPDFFAEIPRPKRRSTLPKVLSQKEVKRIFNTV-RNRKHLLMLQLCYGMGL 213

Query: 205 RCSDSCRAGVQHLQNNIFS--IKTQKTGTIITVELP----DGFMKLLAMTPIGKETFFIN 258
           R S+     V  + +      I+  K      V LP    D   +        K   F  
Sbjct: 214 RVSEVVNLKVSDIDSGRMQVLIEAGKGKKDRYVPLPTAVLDLLREYYKAY-RPKTYLFEG 272

Query: 259 NDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTV 316
               + +       FK     A VN+    HG+R   AT   + G     +    G   +
Sbjct: 273 QYGGRYSVRSVQAVFKNAMKAAKVNRPIGIHGLRHSYATHLLEYGTDISFIQQLLGHNDI 332

Query: 317 DQAETYTKGAD 327
                Y K  +
Sbjct: 333 KTTMLYAKVGN 343


>gi|289627096|ref|ZP_06460050.1| phage integrase family protein [Pseudomonas syringae pv. aesculi
           str. NCPPB3681]
 gi|330868191|gb|EGH02900.1| phage integrase family protein [Pseudomonas syringae pv. aesculi
           str. 0893_23]
          Length = 404

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 56/308 (18%), Positives = 106/308 (34%), Gaps = 29/308 (9%)

Query: 44  IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-I 102
           +     A            +  +   T+  L  ++ +         +++  +++  D+ I
Sbjct: 73  LAQEWLAQVRLGGDPSADKAIARSAPTVADLCKKFMEDHSKQRNKPSTQRGYQAVIDRCI 132

Query: 103 IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA--INPCLS 160
           +   G    + +    + S ++   H P+ A +  + MR +F  A    Y +   NPC  
Sbjct: 133 VPMLGRMKVQDVKRPDVASAMKKMVHKPAEANRTFSVMRKMFNLAEVWGYRSDGTNPCRH 192

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWS-------------EGSQPRLAFEFLLYSGLRCS 207
           V       +     + E+M +   + +                  RL FEF      R S
Sbjct: 193 VPM-YPNGKATHLISDEEMGKLFRYLAFLETDGLGQDHAILPLAIRLQFEFA----GRRS 247

Query: 208 DSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI----NNDK 261
           +        +   N        KTG  ++  L +   +LL+  P      ++    N+  
Sbjct: 248 EIVALQWDWVDLENRRVVWPDSKTG-CMSKPLSEEGHRLLSTAPRKDGCPYVFPSPNHPG 306

Query: 262 QKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
           + M   ++   +     +AGV     HG+R  SAT  A++G      MA    KTV    
Sbjct: 307 KHMTTGEYYGGWTRILKRAGVTHVGTHGIRHRSATDIANSGIPVKVGMALTAHKTVAMFM 366

Query: 321 TYTKGADR 328
            Y    D+
Sbjct: 367 RYVHTEDK 374


>gi|228910970|ref|ZP_04074778.1| Site-specific recombinase, phage integrase [Bacillus thuringiensis
           IBL 200]
 gi|228848625|gb|EEM93471.1| Site-specific recombinase, phage integrase [Bacillus thuringiensis
           IBL 200]
          Length = 322

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 45/284 (15%), Positives = 93/284 (32%), Gaps = 28/284 (9%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES---RKHTPSSAIQFLTSMRV 142
                +   +   F   +R+        IT KH++  +     R+  P++    +++++ 
Sbjct: 41  GFRKRTIDDYTKLFRYFMRELNIDKVEIITAKHVQMYINKLISRELAPATVNIRISALKS 100

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK----SFWSEGSQPRLAFEF 198
           +FK    Q Y+  NP +   + +     I       +++           G +   A   
Sbjct: 101 VFKRLHEQGYIKSNPAVDFVKLRTDEAPIFTLNNNQIKRLFCVVDKTTYAGYRDYCAMLL 160

Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQ----KTGTIITVELPDGFMKLLAMTPIGKET 254
           +L+ GLR ++  +     L  +  +I       K      V +     + L M       
Sbjct: 161 MLHCGLRVNEVNQLEANDLDFDNLTIMLSGAKNKNRKTRAVPMTKKVAEELRMLIEESRE 220

Query: 255 FF-------INNDKQKMNATQFSIWFKAKATKAGVNK----SAHGVRKFSATISADAGAT 303
           +F       + +D   ++              AG++K    S H +R   AT     G +
Sbjct: 221 YFEVTTNVFLTHDGNSIDNDLLRKRMYRYGQFAGLSKECRPSPHSLRHTFATNFLRNGGS 280

Query: 304 AHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
            + LM   G   +     Y       RL  +  +     V + +
Sbjct: 281 VNALMRIMGHADITTTMRYV------RLNDEAVKEQYEKVAAKN 318


>gi|262369523|ref|ZP_06062851.1| site-specific tyrosine recombinase [Acinetobacter johnsonii SH046]
 gi|262315591|gb|EEY96630.1| site-specific tyrosine recombinase [Acinetobacter johnsonii SH046]
          Length = 308

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 51/294 (17%), Positives = 107/294 (36%), Gaps = 40/294 (13%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIR-------KSGDFDYRKITTKHIRSGVES 125
            L++ + K     + + ++  ++E      +        + GD +   +  + I   VE 
Sbjct: 7   QLLAMWLKQREIQNQSAHTLQAYERDVSDFLLFCEQKKLELGDVEATDL-REFIAQKVEY 65

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI-------------R 172
           ++ + SS  + L+S+R   KWA + +++A NP    +  ++                  +
Sbjct: 66  QQLSSSSLQRMLSSIRQFMKWAEQGQHLAFNPADDFQLKRKPRPLPGLVDIETINQILDQ 125

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
              +++++Q    W    + +   E L  SGLR ++     ++ +  N   ++    G  
Sbjct: 126 ALPEKEVEQ--QMWY---RDKALLELLYSSGLRLAEVQGLRIKDIDFNRQLLRITGKGNK 180

Query: 233 ITV-----ELPDGFMKLLAMTP------IGKETFFINNDKQKMNATQFSIWFKAKATKAG 281
             V     +  D  MK L++ P      +     FI      +   Q     K +A +AG
Sbjct: 181 TRVVPFGSKAKDAVMKWLSIYPLWNGDFVPDAQVFITQKGNPLGMRQIENRVKFQAQRAG 240

Query: 282 --VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
             ++   H +R   A+           +    G   +   + YT   D  RL  
Sbjct: 241 VNIDLHPHLLRHCFASHMLSNSGDLRAVQEMLGHSNLSTTQIYTH-VDFDRLAQ 293


>gi|253581279|ref|ZP_04858533.1| transposase [Ruminococcus sp. 5_1_39B_FAA]
 gi|251847433|gb|EES75410.1| transposase [Ruminococcus sp. 5_1_39BFAA]
          Length = 285

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 44/265 (16%), Positives = 100/265 (37%), Gaps = 22/265 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK---HTPSSAIQFLTSMR 141
            +L  ++  ++ +     + ++   D   +TT  +   +  +K    +P +   + + +R
Sbjct: 21  RNLKDSTIHAYCTSVAHFLNRTA-KDIDALTTDDVDIFLTEKKLSGISPETYNHYHSGIR 79

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201
             +K  +++ +   +    + R KR  +     TK ++           + +     +  
Sbjct: 80  FFYKKILKKNWDDDD----IPRMKRDRKLPTVLTKAEISAILDATP-NLKHKAMIATMYS 134

Query: 202 SGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLL------AMTPIGKE 253
            GLR S+        +   N    I+  K+ +     L D  +++L         P G  
Sbjct: 135 GGLRVSEVTHLHYDDISRTNKTIHIRDGKSRSDRYTLLADRTLEILTEYWFQCGRPRG-- 192

Query: 254 TFFINND-KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMAT 310
             F ++     +       +F+  A +AG+ K  S H +R   A+   ++G     + A 
Sbjct: 193 ILFPSSWTGDYLTKDSVIQFFRESAERAGIQKHVSTHCLRHSFASHLFESGCDIKYIQAL 252

Query: 311 YGWKTVDQAETYTKGADRIRLGIKN 335
            G +     E Y   +++  LGIK+
Sbjct: 253 LGHRDPKSTEIYLHVSNKTLLGIKS 277


>gi|302878649|ref|YP_003847213.1| integrase family protein [Gallionella capsiferriformans ES-2]
 gi|302581438|gb|ADL55449.1| integrase family protein [Gallionella capsiferriformans ES-2]
          Length = 298

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 45/284 (15%), Positives = 104/284 (36%), Gaps = 26/284 (9%)

Query: 70  TLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGD-FDYRKITTKHIRSG----V 123
           TL+     +        SL+ ++  ++    +     +    +   +    +R       
Sbjct: 2   TLQDACQSFLSHCRSAVSLSEHTLRAYTFDLEDFQNHAQHETNLSLLNKDDLRKFIRHLR 61

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV-ERPKRKTEGIRPWTKEDMQQF 182
           E RK    +  + +  +++LF+W  ++  ++INP  ++ ER +      R    E+++  
Sbjct: 62  EERKLKEITIKRRIACLKLLFRWVQQENMISINPFDNLNERIRLPKRLPRALGSEEIKLL 121

Query: 183 KSFWSEGSQPR--------LAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTI 232
               +  +  +        +A + LL +G+R  +  +  ++ L   +    I+ +     
Sbjct: 122 TGAINLEATDKEFQEFVTGIATKLLLTTGIRVGELVKIDIEDLVLPDCSLKIQGKGNRQR 181

Query: 233 ITVELPDGFMKLLAMTPIGKET-------FFINNDKQKMNATQFSIWFKAKATKAGVNK- 284
           +         + +A     + T        FI          +  I     A+KAG+ + 
Sbjct: 182 LVYLFEPKLNQAIARYLTIRLTRATETKKLFITEAGIPFTTQKTRILLGDLASKAGIERR 241

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
            + H +R  +AT   +AG     +    G +++   E YT   D
Sbjct: 242 ITPHMLRHTTATQLLEAGLDIRYVQKLLGHQSISTTEIYTHVTD 285


>gi|312880385|ref|ZP_07740185.1| integrase family protein [Aminomonas paucivorans DSM 12260]
 gi|310783676|gb|EFQ24074.1| integrase family protein [Aminomonas paucivorans DSM 12260]
          Length = 309

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 57/298 (19%), Positives = 109/298 (36%), Gaps = 32/298 (10%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           TL  ++ EY        LA ++  +      Q   +S D   R    +     +     +
Sbjct: 13  TLSQMVEEYLDERS-LDLAPSTVKNQGYILRQFAAQSQDEGNRADAVR-----LLQHAKS 66

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-------- 181
           P+    +  +++  F W + Q Y   NP   +    R  +G   +    +Q         
Sbjct: 67  PNVHNLYRATLKCFFDWCISQGYRTDNPGEGI----RTKKGTHKFIDTPVQALDSFIREG 122

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----NNIFSIKTQKTGTIITVEL 237
           F +    G + + A  FL+ +G R +++ +   + +       +   +T KT T  TV  
Sbjct: 123 FDTTTYVGLRDKAAVLFLIDTGARPNEAWQLRPEDVDLVQGIALLRAETTKTRTPRTVFF 182

Query: 238 PDGFMKLLAMTPIGKE-------TFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVR 290
                KLL      +          F  +    M +T+F    +    + G+N + + +R
Sbjct: 183 SKPTAKLLNTLLGNRPDWWGPDVPIFAASTGSPMTSTEFGHRLRPVTARFGLNLTVYSLR 242

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
              AT     G +A EL    G   +      T+ A+  R  ++ + R +S V++  P
Sbjct: 243 HIFATNFLRGGGSALELQRILGHSNMTMT---TRYANLNREDLQEAHRHASPVNALFP 297


>gi|257089964|ref|ZP_05584325.1| phage integrase [Enterococcus faecalis CH188]
 gi|312903388|ref|ZP_07762568.1| tyrosine recombinase XerC [Enterococcus faecalis TX0635]
 gi|256998776|gb|EEU85296.1| phage integrase [Enterococcus faecalis CH188]
 gi|310633264|gb|EFQ16547.1| tyrosine recombinase XerC [Enterococcus faecalis TX0635]
 gi|315577626|gb|EFU89817.1| tyrosine recombinase XerC [Enterococcus faecalis TX0630]
          Length = 299

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 39/267 (14%), Positives = 97/267 (36%), Gaps = 29/267 (10%)

Query: 85  GSLAVNSRISFE---SYFDQIIRKSGDFDY---RKITTKHIRSGVESRKHTPSSAIQFLT 138
              +  ++ +++    +F   ++ SG+ +Y     +  +   S +  ++++ +S  + + 
Sbjct: 18  RGYSEKTKKAYQEDIQHFFSFLKTSGNDNYLTVEHLDVRAYLSELYDQEYSRNSISRKIA 77

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FWSEGSQPRL 194
           S+R  ++++++ E +  NP   V   K++    R + +++M               + + 
Sbjct: 78  SLRSFYQFSLKNEAIQENPFSYVHMKKKQLRLPRFFYEKEMDALFESAQGEHPLDLRNQA 137

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-ITVE------------LPDGF 241
             E L  +G+R S+     V  +      +     G     V             L +G 
Sbjct: 138 LLEVLYGTGIRVSECANLTVDAVDFQASVLLVHGKGNKDRYVPFGSFAQDALKDYLENGR 197

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQ----FSIWFKAKATKAGVNKSAHGVRKFSATIS 297
             L+          F+N+  +++  T      +   K  +  A ++   H +R   AT  
Sbjct: 198 ALLMTKYQKKHPYVFVNHHGEQITPTGIEYVLNQLIKKSSLNAEIH--PHMLRHTFATHL 255

Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324
            + GA    +    G   +   + Y  
Sbjct: 256 LNNGADMRTVQELLGHANLSTTQIYAH 282


>gi|154505593|ref|ZP_02042331.1| hypothetical protein RUMGNA_03132 [Ruminococcus gnavus ATCC 29149]
 gi|166032352|ref|ZP_02235181.1| hypothetical protein DORFOR_02055 [Dorea formicigenerans ATCC
           27755]
 gi|153794032|gb|EDN76452.1| hypothetical protein RUMGNA_03132 [Ruminococcus gnavus ATCC 29149]
 gi|166028075|gb|EDR46832.1| hypothetical protein DORFOR_02055 [Dorea formicigenerans ATCC
           27755]
          Length = 387

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 54/334 (16%), Positives = 109/334 (32%), Gaps = 64/334 (19%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFES-YFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128
           TL      +  +    ++  ++++ ++  Y   I ++ G           +   +++   
Sbjct: 52  TLDTWFDIWLNTHKKRTIKESTQVRYDDFYRRYIKKQIGKQRVADFNPIILERLLQNMAD 111

Query: 129 ---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
              +  +       +  +FK+AV    +  NPC  VE PK KT+ IR  T ++ ++    
Sbjct: 112 DDYSTKTIRDVYNILNAMFKYAVHNRILTFNPCAGVEVPKTKTKQIRVLTVKEQREVLEH 171

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---------------------NNIFSI 224
             E     L  +  L +G+R  +        +                        +F  
Sbjct: 172 AKERIHENL-IQVALGTGMRGGELLGLTWDDVDFRKREISVNKTLVYIKDKETKKYVFKY 230

Query: 225 KTQKTGTII-TVELPDGFMKLLAMT---------------PIGKE--TFFINNDKQKMNA 266
           +T KT   I T+ + D   K L                  P+       F+  + + +  
Sbjct: 231 QTPKTKNSIRTIPMQDSVYKALKRQWIQLKEMQLSASEWQPLEGFENLVFVGKNGKPITE 290

Query: 267 TQFSI---WF-----KAKATKAGVNKS---------AHGVRKFSATISADAGATAHELMA 309
             F +   W      K +  +A  NK+          H +R   AT   +AG  A  +  
Sbjct: 291 HTFQVTLDWIEKSINKERKKQAEKNKTVFIPIPHFYPHALRHTFATRCFEAGIDAKVVQG 350

Query: 310 TYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSV 342
             G  ++    + YT   D          ++ ++
Sbjct: 351 FLGHYSIAITLDLYTHVTDDK--AKSEMDKLQNL 382


>gi|291522920|emb|CBK81213.1| Site-specific recombinase XerD [Coprococcus catus GD/7]
          Length = 280

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 44/265 (16%), Positives = 99/265 (37%), Gaps = 22/265 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK---HTPSSAIQFLTSMR 141
            +L  ++  ++ +     +  +   D   +TT  + + +  +K    +P +   + + +R
Sbjct: 16  RNLKDSTIHAYCTSVAHFLNHTA-KDIDALTTDDVDTFLTEKKLSGISPETYNHYHSGIR 74

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201
             +K  ++  +   +    + R KR  +     TK ++           + +     +  
Sbjct: 75  FFYKKVLKMNWDDDD----IPRMKRDRKLPAVLTKAEISAILDATP-NLKHKAMIATMYS 129

Query: 202 SGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLL------AMTPIGKE 253
            GLR S+        +   N    I+  K+ +     L D  +++L         P G  
Sbjct: 130 GGLRVSEVTHLHYDDISRTNKTIHIRDGKSRSDRYTLLADRTLEILTEYWFQCGRPRG-- 187

Query: 254 TFFINND-KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMAT 310
             F ++     +       +F+  A +AG+ K  S H +R   A+   ++G     + A 
Sbjct: 188 ILFPSSWTGDYLTKDSVIQFFRESAERAGIQKHVSTHCLRHSFASHLFESGCDIKYIQAL 247

Query: 311 YGWKTVDQAETYTKGADRIRLGIKN 335
            G +     E Y   +++  LGIK+
Sbjct: 248 LGHRDPKSTEIYLHVSNKTLLGIKS 272


>gi|85708224|ref|ZP_01039290.1| site-specific recombinase, phage integrase family protein
           [Erythrobacter sp. NAP1]
 gi|85689758|gb|EAQ29761.1| site-specific recombinase, phage integrase family protein
           [Erythrobacter sp. NAP1]
          Length = 330

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 52/273 (19%), Positives = 103/273 (37%), Gaps = 15/273 (5%)

Query: 81  SAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
           S HW     ++R +  +Y D ++I + G      I    I    +S      +  + +  
Sbjct: 59  SPHWK---PSTRAASRAYIDKRLIPRFGTLCVDAIERADINRWRDSMADVGGAFNRSIPV 115

Query: 140 MRVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR---- 193
           M V+ ++A +  Y     NPC  V R KR     R  + ++ ++     +E         
Sbjct: 116 MSVMMQYAEKLGYREKNTNPCRGVSRFKRDLPE-RYLSADEYRRLGKVLAEHDGANEFVV 174

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI-GK 252
            A   L+Y+G R S+      +++Q +  ++   KTG   T+ L    + +L      G 
Sbjct: 175 PALRMLIYTGARVSEIATLRWRYVQPSRLALPDSKTG-PKTIYLNPQAIAVLDALQRRGD 233

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYG 312
           +        +++       W K +   A  +   H +R   A+++   G     +    G
Sbjct: 234 DQLVFPAMYREVPINLGQHWEKIRRKAALPDVRLHDLRHSFASVAIAKGIPLATIGKLLG 293

Query: 313 WKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345
               +    Y   AD   +  +++ RI S + +
Sbjct: 294 HALPETTARYAHLAD--EVISESADRICSSLAN 324


>gi|104774158|ref|YP_619138.1| site-specific recombinase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|116514251|ref|YP_813157.1| integrase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
 gi|122275017|sp|Q04A03|XERC_LACDB RecName: Full=Tyrosine recombinase xerC
 gi|123378433|sp|Q1G9V2|XERC_LACDA RecName: Full=Tyrosine recombinase xerC
 gi|103423239|emb|CAI98072.1| Site-specific recombinase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|116093566|gb|ABJ58719.1| tyrosine recombinase XerC subunit [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
          Length = 295

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 40/264 (15%), Positives = 102/264 (38%), Gaps = 24/264 (9%)

Query: 85  GSLAVNSRISFESYF---DQIIRKSGDFD-YRKITTKHIRSGVES--RKHTPSSAIQFLT 138
            S +  + ++++       +  +++G F  + +I+ + +   + +  +K   S+  + L+
Sbjct: 15  RSYSPKTVLAYQKDLAAAKKFWQENGGFPGWDQISRRDLEIYLLATGQKLASSTLSRKLS 74

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG----SQPRL 194
           S++  +++  R+  V  +P ++++  + K +    + ++++ Q     ++G     + R 
Sbjct: 75  SLKSFYRFLTRRGLVKADPTVAIQLRRGKKKLPEFFYQDEVGQVIRSLNDGKPLTVRNRA 134

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLL-----AMT 248
                  +G+R S+     ++ L   N   +   K      V       K L     A  
Sbjct: 135 IVALFYATGMRLSELTDLKIKQLDLENGMILVHGKGNKDRYVFFDQESKKYLEEYLQAAR 194

Query: 249 P------IGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADA 300
           P            F+N   + +++   +   +    KAG+      H +R   AT   + 
Sbjct: 195 PSLLKNEPDTGAVFLNKLGRPISSRGIAKAVQQIFQKAGLTAGAHPHELRHSFATAMLNN 254

Query: 301 GATAHELMATYGWKTVDQAETYTK 324
           GA    +    G + +   + YT 
Sbjct: 255 GADLRSVQELLGHEDLSTTQIYTH 278


>gi|257486889|ref|ZP_05640930.1| Phage integrase:Phage integrase, N-terminal SAM-like protein
           [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|331013460|gb|EGH93516.1| Phage integrase [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 319

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 43/270 (15%), Positives = 89/270 (32%), Gaps = 30/270 (11%)

Query: 89  VNSRISFESYFDQIIRKSGDF---DYRKITTKHI---RSGVESRKHTPSSAIQFLTSMRV 142
             +R +++          G     ++R +T  H+   R+ +E R    ++  + L ++  
Sbjct: 39  PRTRRAYQIDLQDFCSFVGLAGADEFRAVTRAHVLAWRAQLEQRGLAGATIRRKLAALAS 98

Query: 143 LFKWAVRQE-YVAINPCLSVERPKRKTEGIRP--WTKEDMQQFKSFWSE----GSQPRLA 195
           LF   +        NP   V+RP+  +   +         +            G + R  
Sbjct: 99  LFDHLLENNAVAGGNPVHGVKRPRIDSNEGKTPALADHQAKALLDAPPAESLKGLRDRAV 158

Query: 196 FEFLLYSGLRCSDSCRAGVQHL--QNNIFSIK-TQKTGTIITVELPDGFMKLLAMTPIGK 252
              LLY GLR  ++ +     L  +  I  ++   K G +  + L     + +       
Sbjct: 159 LAVLLYHGLRREEAAQLQTSDLQERRGIKHLRVQGKGGKLRWLPLHPVAAERIYAYIEQN 218

Query: 253 E-------TFFINNDKQ----KMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISA 298
                   + F +   +     ++A          A  AG+       HG+R  +AT + 
Sbjct: 219 MERGAGYGSLFRSLRGRSSGTGLSADGIYKIVCHWAISAGIKVEGLGVHGLRATAATNAL 278

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADR 328
           +  A   ++    G   +     Y +   R
Sbjct: 279 EHDADIAKVQIWLGHANISTTRLYDRRGQR 308


>gi|297184071|gb|ADI20190.1| hypothetical protein [uncultured Sphingobacterium sp. EB080_L08E11]
          Length = 343

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 45/274 (16%), Positives = 100/274 (36%), Gaps = 24/274 (8%)

Query: 74  LISEYRKSA-HWGSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRS---GVESR 126
            I ++          +  + ++++   ++    +R+  D   +     H++        +
Sbjct: 51  YIDQFLAYLIAERGYSPKTSVAYKKELERWALYLREEADASLKAAQKAHVKRYIVWRNKQ 110

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             +P S  + L+ +R  +KWA+R+  V  NP   V   K   + +    K+D++   +  
Sbjct: 111 GISPRSINRSLSCIRTFYKWAIREALVCENPGQGVRSMKTAKKVVMSVPKDDLKALVNDP 170

Query: 187 S------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPD 239
                  EG + +L    L   GLR ++       H   +   ++   K      + +P 
Sbjct: 171 ELFTTDFEGRRDQLLLLLLYGLGLRRAEVISLTPTHFDWSRKLVRVIGKRNKERQIPMPA 230

Query: 240 GFMKLLAM-------TPIGKE-TFFINNDKQKMNATQFSIW--FKAKATKAGVNKSAHGV 289
              +            P+  + T  +    +K+          F    T + V+K+ H +
Sbjct: 231 LLEEYYLRYVEIRDQLPVRHDATLLLTAKGKKLYDNLVYNRVLFYLNRTTSVVDKNPHAL 290

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           R   AT   +AG   + +    G +++   + YT
Sbjct: 291 RHSYATHLLNAGVDINTVKELLGHESLSSTQVYT 324


>gi|148285126|ref|YP_001249216.1| phage-related integrase [Orientia tsutsugamushi str. Boryong]
 gi|146740565|emb|CAM81175.1| phage-related integrase [Orientia tsutsugamushi str. Boryong]
          Length = 442

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 39/267 (14%), Positives = 94/267 (35%), Gaps = 28/267 (10%)

Query: 83  HWGSLAVNSRISFESYFDQIIRKSG---DFDYRKITTKHIRSGVESRKHTPS--SAIQFL 137
            +   + +   S++   +++   +    +    +IT + I+   +         +A   L
Sbjct: 127 KYTEYSSHHHRSWKRTSERVKIYAAFLYNKKISEITKEDIQKIFDEITARKHYVTANNIL 186

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW--SEGSQ---- 191
            ++  +F  A+    +  NP   ++R K+++      T E+M++        E SQ    
Sbjct: 187 MNLSPIFNKAIEWGLIDKNPVHGIKRHKQESRSRYV-TNEEMERLMKVLVEKENSQLTEE 245

Query: 192 -------PRLAFEFLLYSGLRCSDSCRAGVQHLQNNI----FSIKTQKTGTIITVELPDG 240
                    L     L++  R  +        +  +           K G  + + L D 
Sbjct: 246 QKQSKISETLFLFIALFTAARSGNILAMRWDEISLSEKIWCIPKTKSKNGKQLYIGLADK 305

Query: 241 FMKLLAMTP-IGKETFFI---NNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSAT 295
            + +L       K  + +    ++ + ++++     +     KAG+ N + H +R+  AT
Sbjct: 306 LIAVLQNRKLCSKSEWILPSVKDNSKHISSSTIHRAWAKIRKKAGIPNVTIHDLRRTFAT 365

Query: 296 ISADAGATAHELMATYGWKTVDQAETY 322
              + G T   +    G    +  + Y
Sbjct: 366 WMINNGETVDTISQILGHSNTNTTKIY 392


>gi|330825567|ref|YP_004388870.1| integrase family protein [Alicycliphilus denitrificans K601]
 gi|329310939|gb|AEB85354.1| integrase family protein [Alicycliphilus denitrificans K601]
          Length = 401

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 61/297 (20%), Positives = 103/297 (34%), Gaps = 19/297 (6%)

Query: 48  MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKS 106
             A            +  +K  T K L   +           +++  ++   D  +I   
Sbjct: 77  WLAEVRRGGDPGLDKAEARKAPTAKELCGRFMDDHSKPHNKPSTQAGYQYQIDSFVIPAF 136

Query: 107 GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI--NPCLSVERP 164
           G     ++T   I + ++  + +P+ A + L+ +R +F  A    Y     NPC  V + 
Sbjct: 137 GSKKVHEVTRHDITALMKRMEKSPTQANRVLSLVRKMFNLAELWGYRPDGSNPCRHVPKY 196

Query: 165 KRKTEGIRPWTKEDMQQFKSFWS-------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217
             K    R  T E M +  ++         E     LA         R S+        L
Sbjct: 197 PEKG-STRLITDEQMVKLFAYLDKAEVDGLEHPIHLLAVRLQFEFAARMSEVLLLRWHWL 255

Query: 218 Q--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFF----INNDKQKMNATQFSI 271
              N        KTG +    L     +LL   P   ++ +    I + K+ ++   +  
Sbjct: 256 DLPNGRVVWPDSKTGDMSK-PLSAEARRLLESAPHYGDSPYVCPAILDHKRPLSPHSYYQ 314

Query: 272 WFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
            ++    +AGV K   HG+R  SAT  A++G      MA    KTV     Y    D
Sbjct: 315 AWRRILDRAGVPKVGTHGIRHRSATDIANSGVPLKVGMALTAHKTVAMFMRYVHTED 371


>gi|254283555|ref|ZP_04958523.1| hypothetical protein NOR51B_2055 [gamma proteobacterium NOR51-B]
 gi|219679758|gb|EED36107.1| hypothetical protein NOR51B_2055 [gamma proteobacterium NOR51-B]
          Length = 391

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 50/350 (14%), Positives = 108/350 (30%), Gaps = 32/350 (9%)

Query: 12  TKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGS-------TPKREYINSP 64
            ++ +  G     ++   G+   +     S        A               +     
Sbjct: 38  VRDTSLVGTYYQRYKNAAGKTAHVKIGRASDISLKAARARAQQLRTDIQSGSDPQADTRQ 97

Query: 65  RKKPTTLKWLI-SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
           RK   T        Y    H        +   + +  ++  + G     +I+ + ++   
Sbjct: 98  RKAVPTWNAFFTHSYL--PHAKQKKRTWKNDADMHRLRLGPRFGATPINRISRQEVQQFH 155

Query: 124 ESRKHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
              + +   P++A   L  +R     AV    +  NP   V++     E  R  ++ +++
Sbjct: 156 NELRESGIAPATADHHLKLLRHALNLAVDWGLLQANPAARVKQFNVFNEVERYLSEVELR 215

Query: 181 QFKSFWS--EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIIT 234
           +  +     E      A  +LL +G R  +   A    +       +      K+  + +
Sbjct: 216 RLLAVLKSHENRPVSCAVLWLLCTGSRVGEMLAAEWPDIDRGNRVWVVHATNSKSKKLRS 275

Query: 235 VEL-------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSA 286
           + L        D    L    P G+   FI          +     +     AG+ N + 
Sbjct: 276 IPLNDVALGVLDELQTLPRYQPDGR--LFIGKRGPLGTINKVWYGIRDA---AGLENFTL 330

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
           H +R   A++  ++G + +E+    G         Y+  +     G  NS
Sbjct: 331 HCLRHSHASLLVNSGHSLYEVQRVLGHSDPKVTMRYSHLSQESLQGAANS 380


>gi|28867454|ref|NP_790073.1| integrase/recombinase XerC [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|213970725|ref|ZP_03398850.1| integrase/recombinase XerC [Pseudomonas syringae pv. tomato T1]
 gi|81732947|sp|Q88B11|XERC_PSESM RecName: Full=Tyrosine recombinase xerC
 gi|28850688|gb|AAO53768.1| integrase/recombinase XerC [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|213924559|gb|EEB58129.1| integrase/recombinase XerC [Pseudomonas syringae pv. tomato T1]
          Length = 299

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 36/259 (13%), Positives = 92/259 (35%), Gaps = 19/259 (7%)

Query: 85  GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIR---SGVESRKHTPSSAIQFLT 138
             ++ ++  ++     ++    +K+    +  +  +H+R   +    +  +  S  + L+
Sbjct: 16  RQVSPHTLEAYRRDLSKVLAYCQKARLSSWNDLDIQHLRSFTARQHQQGQSSRSLARMLS 75

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRL 194
           ++R  +K+  R+     +P   +  PK +    +    +   Q      E      + + 
Sbjct: 76  AVRGFYKYLNREGLCQHDPANGLSPPKGERRLPKTLDTDRTAQLLDGGVEDDFLAHRDQA 135

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV--------ELPDGFMKLLA 246
             E L  SGLR S+     +  L      ++    G+   V        +  + ++ L A
Sbjct: 136 IMELLYSSGLRLSELTGLNLDQLDLRDGLVQVLGKGSKTRVLPVGSKARQALETWLPLRA 195

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAK-ATKAGVNKSAHGVRKFSATISADAGATAH 305
           +T    +  F++   +++      +  K     + G N   H +R   A+   ++     
Sbjct: 196 LTNPQDDAVFVSQQGKRLGPRAVQLRIKTAGERELGQNLHPHMLRHSFASHLLESSQDLR 255

Query: 306 ELMATYGWKTVDQAETYTK 324
            +    G   +   + YT 
Sbjct: 256 AVQELLGHADIKTTQIYTH 274


>gi|313888282|ref|ZP_07821953.1| phage integrase, N-terminal SAM domain protein [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312845685|gb|EFR33075.1| phage integrase, N-terminal SAM domain protein [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 329

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 54/324 (16%), Positives = 108/324 (33%), Gaps = 50/324 (15%)

Query: 72  KWLISE---YRKSAHWGSLAVNSRISFESYFDQIIR-------------KSGDFDYRKIT 115
             LI +   Y KS      + N+   +        R             +        I+
Sbjct: 4   SNLIDDFLDYMKST--KGASDNTVKEYYYDLRMFARFIKRRKGLVDSKIEFDHITIEDIS 61

Query: 116 TKHIRSGV------------ESRKHTPSSAIQFLTSMRVLFKWA-VRQEYVAINPCLSVE 162
              + S                RK +  S  + ++S+R  + +   + + + INP + ++
Sbjct: 62  PDLLESVTKQDIYAYNAFLERERKISNRSKFRKISSIRSFYNYLHAKIDIIKINPVIDID 121

Query: 163 RPKRKTEGIRPWTKEDMQQFKSFWSEGS-------QPRLAFEFLLYSGLRCSDSCRAGVQ 215
            PK +       T +          E         +        L  G+R S+     + 
Sbjct: 122 MPKVEKTLPVYLTLDQSLNLLKTIEESKIKPLYKKRDYAIVTLFLNCGMRLSELAGMDIS 181

Query: 216 HLQNNIFSIKTQKTGTIITVELPDG----FMKLLAMTP-IGKETFFINNDKQKMNATQFS 270
           HLQ +       K      + L +       + L + P I  +  F++  +Q+M+     
Sbjct: 182 HLQQDNTLKVIGKGNKERVIYLNEASVYAIEEYLKLRPQIKDDALFLSMRQQRMSNRSIQ 241

Query: 271 IWFKAKATKAGVN---KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYT--- 323
              +     +G++    S H +R  +AT+  + G A    L    G ++V+  E YT   
Sbjct: 242 HMIEKHMKNSGLDTNIYSVHKLRHTAATLLYEYGNADIRALQEILGHESVNTTEIYTHVN 301

Query: 324 KGADRIRLGIKNSRRISSVVDSDD 347
           K A R  +      ++++  +  D
Sbjct: 302 KKALRKMVDSNPLSKLNNYTNKKD 325


>gi|297571163|ref|YP_003696937.1| integrase family protein [Arcanobacterium haemolyticum DSM 20595]
 gi|296931510|gb|ADH92318.1| integrase family protein [Arcanobacterium haemolyticum DSM 20595]
          Length = 313

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 47/295 (15%), Positives = 100/295 (33%), Gaps = 30/295 (10%)

Query: 68  PTTLKWLISEYRKSAHWGS-LAVNSRISF----ESYFDQIIRKSGD--FDYRKITTKHIR 120
           PT  + ++  Y++       L+ ++  ++     S  + + + S D      +I  + +R
Sbjct: 11  PTQFEQILERYQRELELRRGLSAHTCRAYLHEARSLLEFVCKHSDDPATSLPEIDIRDMR 70

Query: 121 SGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
             +       H+ +S  +   S+R   +W  +  Y A +P   ++ PK   E     T E
Sbjct: 71  LWLADNQQAGHSRASIARHSASIRTFTRWLFKNAYTAADPGTQLKSPKVSNELPHVLTVE 130

Query: 178 DMQQFKSFWSEGS--------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229
             ++      E +        +     E L  + +R S+     V  +  +       K 
Sbjct: 131 QARELLRVAKERTADGNALAIRDAAIVELLYATAIRVSELTGTDVSDVSPSSNLRVIGKG 190

Query: 230 GTIITVELPDGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATK 279
                V         L      + T           F+    ++++              
Sbjct: 191 DKERIVPFGRPARNALMAWLDVRGTLLEKNPTEQALFVGARGKRIDPRTVRTLLTQLTKA 250

Query: 280 AGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLG 332
           AG+ + + H +R  +AT   D G+    +    G  ++   + YT   A+R+R  
Sbjct: 251 AGLPDITPHDLRHSAATHLLDGGSDLRTVQEILGHSSIGTTQRYTHVSAERLRAA 305


>gi|291299701|ref|YP_003510979.1| integrase family protein [Stackebrandtia nassauensis DSM 44728]
 gi|290568921|gb|ADD41886.1| integrase family protein [Stackebrandtia nassauensis DSM 44728]
          Length = 317

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 43/309 (13%), Positives = 107/309 (34%), Gaps = 25/309 (8%)

Query: 50  ALTGSTPKREYINSPRKKPTTLKWLISEYRKSA-HWGSLAVNSRISFESYFDQII---RK 105
           A + +       +     P + K ++ ++     H    + ++   + +    ++     
Sbjct: 2   ARSETEAADADDSQYEALPASFKEVLGQFVHHLTHECGRSAHTVRGYRADVTSLLVHLAA 61

Query: 106 SGDFDYRKITTKHIRSGVESRKHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162
           +G      +    +RS + +R+      +S  + ++++R    WA RQ ++  +    + 
Sbjct: 62  TGTTRLAGVDIAGLRSWLANRRAQGIARASLARKVSAVRAFTAWAHRQGHLDADAGARLS 121

Query: 163 RPKRKTEGIRPWTKEDMQQFKSFWSE-----GSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217
            P            +  +   +  +      G + R   E L  +G+R S+ C   V  +
Sbjct: 122 GPSVPHNPPEILRTDQAETLAAATASDGSATGLRDRAVVELLYATGIRVSELCGLDVASV 181

Query: 218 QNNIFSIKT-QKTGTIITVELPDGFMKLLA----------MTPIGKETFFINNDKQKMNA 266
             +   ++   K     TV       + +                 +   +     +++ 
Sbjct: 182 DRSRNVLRVFGKGAKERTVPFGIPAARAVDDYLQRARPELAADHSGDALLLGVRGGRLHP 241

Query: 267 TQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK- 324
           +      +   ++ G+   + HG+R  +AT   D GA    +    G  ++D  + YT  
Sbjct: 242 STVRRVLRDWLSRTGMPSLTPHGLRHSAATHLLDGGADLRSVQELLGHASIDSTQIYTHV 301

Query: 325 GADRIRLGI 333
            A+R+R   
Sbjct: 302 SAERLRGAY 310


>gi|218232818|ref|YP_002365323.1| integrase/recombinase [Bacillus cereus B4264]
 gi|218160775|gb|ACK60767.1| integrase/recombinase [Bacillus cereus B4264]
          Length = 308

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 42/262 (16%), Positives = 95/262 (36%), Gaps = 15/262 (5%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--TPSSA 133
            ++ K  +  +L   +   +++ F    +K  +    +   K I   +   K     ++ 
Sbjct: 26  EKFFKDCYLRNLRPATIGYYKNEF-HGAKKIINKQLVEWVQKDIEDLILKSKQLMKVTTI 84

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-----E 188
              L ++R  + +  + + +  NP  +++  + + + I     +++++            
Sbjct: 85  NTRLRALRSFYNFLDKNKLIDKNPMKNIKLLRDRQKTIETLDNQEIEKLIKTIRKQKTFV 144

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA-- 246
           G +  +     L +G+R S+     V+ ++ N   I+  K     TV L D   + L   
Sbjct: 145 GFRDEVILLVFLDTGVRLSELVGINVEDVRYNKLIIRRTKNLFERTVYLSDTTQERLESY 204

Query: 247 ---MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301
                 +     FI+ D +++N             +A ++K  S H  R   A     +G
Sbjct: 205 IKVRGEVATNKLFISQDNKELNPHSIQTRLTKYGKEAKISKRVSPHTFRHTMAKRMIVSG 264

Query: 302 ATAHELMATYGWKTVDQAETYT 323
             A  LM   G   +   + Y 
Sbjct: 265 LDAFSLMHLLGHTDITVTKRYV 286


>gi|299137337|ref|ZP_07030519.1| integrase family protein [Acidobacterium sp. MP5ACTX8]
 gi|298600742|gb|EFI56898.1| integrase family protein [Acidobacterium sp. MP5ACTX8]
          Length = 317

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 91/289 (31%), Gaps = 34/289 (11%)

Query: 72  KWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK-----HIRSGVES 125
             L+ EY         L   S  +++   +         +   +T +          +  
Sbjct: 11  ASLLREYMTHLRVERGLRPLSCEAYQRDLEMFAEFLEGANATLLTARQESVSGFMQHLRE 70

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
                 S  + L+ +R  ++W +  + +  +P +++E P       +   + ++ +    
Sbjct: 71  HGIESRSVARKLSCLRGFYRWLLMDKRIPHDPTVNIESPSSWKVLPKSLAETEVNEMLER 130

Query: 186 WSEGSQ----------PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
               ++               E L   GLR  +      + L+    S++ +  G    +
Sbjct: 131 TGVAARSDAADGASLRDHAILELLYAGGLRVGEIVSLRQEDLRLESASVQVRGKGDKERI 190

Query: 236 -------------ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
                         +  G  +L+      + T F++     +   +     ++       
Sbjct: 191 VPIGRSAIEALEAYVQRGRPELMRSKSGVQRTLFLSVRGNPLTTQKVWQMVRSV----NS 246

Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIR 330
           + S H +R   AT   + GA    +    G   +   + YT  A DR++
Sbjct: 247 HASPHKLRHSCATHMVEHGADLRTVQTLLGHADIATTQVYTHLAIDRLK 295


>gi|299144068|ref|ZP_07037148.1| tyrosine recombinase XerC [Peptoniphilus sp. oral taxon 386 str.
           F0131]
 gi|298518553|gb|EFI42292.1| tyrosine recombinase XerC [Peptoniphilus sp. oral taxon 386 str.
           F0131]
          Length = 326

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 40/239 (16%), Positives = 89/239 (37%), Gaps = 18/239 (7%)

Query: 109 FDYRKITTKHIRSGVES-RKHTPSSAIQFLTSMRVLFKWAV-RQEYVAINPCLSVERPKR 166
               K+      S ++  RK++  +  + ++S+R  F +   + + +  NP   ++ PK 
Sbjct: 70  KSINKMDIYAYNSYLDKIRKNSNKTKYRKISSIRTFFNYLSNKIDVIEFNPIEDIDMPKI 129

Query: 167 KTEGIRPWTKEDMQQFKSFWSEG-------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQN 219
           +       T E+ +      SE        ++        L  G+R S+     ++ + N
Sbjct: 130 EKRLPIYLTLEESKLLLKTVSESKIKDKYKTRDYAIVVLFLNCGMRLSELSGLNIKDVNN 189

Query: 220 NIFSIKTQKTGTIITVELPDGFMKLLA-----MTPIGKETFFINNDKQKMNATQFSIWFK 274
           +     T K     T+ L +  +  L            +  F++N   +++  Q     +
Sbjct: 190 DNTLRVTGKGNKERTIYLNNACVNALKNYLNYRNDTDNKALFLSNRNTRLSNRQIQRMVE 249

Query: 275 AKATKAGVN---KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGADRI 329
                +G++    + H +R  +A++    G A    L    G ++V   + YT   D+ 
Sbjct: 250 KYINASGLDSEKYTVHKLRHTAASLMYQYGDADIRSLQEILGHESVTTTQIYTHINDKQ 308


>gi|167917076|ref|ZP_02504167.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei
           BCC215]
          Length = 310

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 45/279 (16%), Positives = 93/279 (33%), Gaps = 30/279 (10%)

Query: 75  ISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTP 130
           I +Y  +  H   L+ ++  ++    D++ R +       +T   +RS V        + 
Sbjct: 10  IVDYLSNLRHVRKLSDHTLRAYAHELDELKRLANGRPLDSLTAIDMRSAVARAHAGGLSA 69

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
            S    L++ R  ++W  +   +  NP  +V  PKR     +  + +D        + G+
Sbjct: 70  RSISHRLSAWRAFYRWFSQHVEMNANPVAAVRAPKRAKTLPKALSVDDTAALMDAPTAGT 129

Query: 191 ----QPRLAFEFLLYSGLRCSDSCRAGVQHLQN------NIFSIKT------QKTGTIIT 234
               +     E    SGLR ++     ++++++          +         K      
Sbjct: 130 AESLRDHAILELFYSSGLRLAELIGLDIEYVKDGAYRSAGWLDLAEAEVTVHGKGDKERK 189

Query: 235 VEL----PDGFMKLLAM----TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284
           V +     D     LA+            F++    +M+        K  A  AG+    
Sbjct: 190 VPVGRKALDALHAWLAVRGELVKHDPRPLFLSVRGNRMSPGVVRERVKRAALAAGIPANV 249

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
             H +R   AT    +      +    G  ++   + YT
Sbjct: 250 HPHVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYT 288


>gi|320528392|ref|ZP_08029554.1| phage integrase, SAM-like domain protein [Solobacterium moorei
           F0204]
 gi|320131306|gb|EFW23874.1| phage integrase, SAM-like domain protein [Solobacterium moorei
           F0204]
          Length = 308

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 42/268 (15%), Positives = 96/268 (35%), Gaps = 23/268 (8%)

Query: 80  KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI--QFL 137
           KS    S   N    +  + D    + G  + +KI  + I   + ++    +S    +  
Sbjct: 20  KSKRTVSSYTNDLKQYMQFLD----EQGITNTKKIKPELIEEFIANQSEYKASTSLARMT 75

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPR 193
            ++R   ++ +   +   +P L+++  K         T +++++    + +     +   
Sbjct: 76  AAIRSFHQF-MTMMHDEPDPSLNLQVHKGPKTLPIYCTVDEIKRLMQSFDDTNIQDNLDH 134

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELP----DGFMKLLAMT 248
              E +   GLR S+ C   +  +  +   I+   K      V +P        + +++T
Sbjct: 135 TLLETIYSCGLRVSEICNLTINRVDLDTGRIRVLGKGDKERIVPIPKGSIPLLKQYISIT 194

Query: 249 PI-----GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301
            +         FF+N   +K+ +    +  + K  +    K  + H +R   AT     G
Sbjct: 195 RVNLIQKKTNIFFLNRFGRKITSKYVELLLQRKCVELDFKKHITPHKLRHSYATHMLQGG 254

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRI 329
           A    +    G   +   E YT   ++ 
Sbjct: 255 ADLRSIQEILGHSNIQTTEIYTHVQNKQ 282


>gi|253577472|ref|ZP_04854787.1| integrase [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251843172|gb|EES71205.1| integrase [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 323

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 42/298 (14%), Positives = 97/298 (32%), Gaps = 29/298 (9%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD----FDYRKITTK----HIRSG 122
            + L+  +       +L+  +   ++    Q+     +     +   IT++    H  + 
Sbjct: 25  FEDLLQSFILDCKSKNLSPLTLRFYQDSIQQMKVAFQEQQVPLNIYAITSRQIKNHFVAY 84

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           +  +  + ++    + +++   K+   + ++  N    +   K     I+ +TKE +   
Sbjct: 85  LIEQGKSDNTVNGRIKAVKQFLKYLFEEGWLTQNVAEELHVVKAAKLMIQTFTKEQVAAL 144

Query: 183 KSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQH--LQNNIFSIKTQKTGTIITVE 236
                     G +       L  +G+R S+ C   +     +     I   K G    V 
Sbjct: 145 LEQPDRKTFTGYRDFTMMVLLFETGMRISELCNLKIGDLFFKEQEIRITKGKGGRARRVP 204

Query: 237 LPDGFMKLLAM-----TPIGKETFFINNDKQKMNATQFSIWFKAKATKA---GVNKSAHG 288
                 K++         +  +  F+N + ++++        +     A   GV  S H 
Sbjct: 205 FQQTSAKVVRRYLDIRGDLETDALFVNINNKQISTRALQEKMQVYGIAACIKGVRVSPHT 264

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYT-------KGADRIRLGIKNSRRI 339
            R   A      G     L    G  T+D  + Y        K   +    ++N +R+
Sbjct: 265 FRHTMAKFYILNGGDPFTLRRILGHSTLDMVDYYVELFSSDIKQQHKKFSPVENMKRM 322


>gi|329895691|ref|ZP_08271114.1| site-specific tyrosine recombinase XerC [gamma proteobacterium
           IMCC3088]
 gi|328922209|gb|EGG29563.1| site-specific tyrosine recombinase XerC [gamma proteobacterium
           IMCC3088]
          Length = 306

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 40/261 (15%), Positives = 87/261 (33%), Gaps = 21/261 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFD---YRKITTKHIRSGVESRKHT---PSSAIQFLT 138
             L+ ++   ++   D  + +    D      +   H+RS   S +     P+S  + L+
Sbjct: 22  KQLSAHTLKHYQRDIDSFVAQLEPSDADNIHSLKEYHVRSWANSLRRKGLAPASIARHLS 81

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE---GSQPRLA 195
           S+R  F++  ++  ++ NP   V  PK+  +  +    + + Q     SE    ++    
Sbjct: 82  SVRSWFQFCAKRFGLSHNPAAGVRAPKQARKLPKAMDADQINQCLVAPSESDLDTRDLAM 141

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVEL----PDGFMKLLAMTPI 250
            E L   GLR S+     +  +         T K      + +     D   K +   P+
Sbjct: 142 AELLYSCGLRLSELQSLTLAQIDIQQRLVTVTGKGNKTRQIPIGGVALDALKKWMRQHPL 201

Query: 251 GKET-----FFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGAT 303
             +       F     + ++           A    +  +   H +R   A+   ++   
Sbjct: 202 AGDLQASTPVFTTRQGKALSPRSIQTRLDRLAKHNAIPVHVHPHMMRHSFASHLLESSGD 261

Query: 304 AHELMATYGWKTVDQAETYTK 324
              +    G   +   + YT 
Sbjct: 262 LRAVQELLGHSNISTTQIYTH 282


>gi|324115011|gb|EGC08976.1| phage integrase [Escherichia fergusonii B253]
          Length = 392

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 54/328 (16%), Positives = 110/328 (33%), Gaps = 23/328 (7%)

Query: 19  GKIIYYFRKG-HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP-------TT 70
           G++ Y  RK  +G+   +P    + F                                 T
Sbjct: 51  GRMSYIVRKNINGKSHYVPIGCGTQFSINEAREKASEIIYSLKRKGKIHGKDYAAIKNMT 110

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
              LI +Y        +  ++        + +  + G     +IT   I   +   +  P
Sbjct: 111 FGQLIDKYEVDVLSTGVKKSANTDRSKIKNYLYPQLGALKVAQITEGDILRYLAGLELKP 170

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP--------WTKEDMQQF 182
           ++  + L  ++ LF +AVR  +V+ +P   ++     T   +         W +  + Q 
Sbjct: 171 ATRNRHLALIKALFTYAVRMNFVSCSPARYIKALPETTSQRKAMADAQSKSWMEAAI-QM 229

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDG 240
           ++   + +   L       +GLR  ++    ++ +       +++  K G +  V + D 
Sbjct: 230 RNGEPDNAALALLVFLA-LTGLRLGETRYLLLEDIDWSRQTITLRETKNGKLRCVPVGDK 288

Query: 241 FMKLL--AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATIS 297
              LL      +G + +            +     K    KAG+   + H +R   AT  
Sbjct: 289 AFVLLTEQRQHLGDKGWVFPGYNTTNPVAEPRRLQKRICEKAGISPFTIHEMRHTFATKL 348

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKG 325
            ++GA  H +    G  T+   E Y  G
Sbjct: 349 IESGADIHTIKDLLGHSTIKVTERYLHG 376


>gi|147669488|ref|YP_001214306.1| phage integrase family protein [Dehalococcoides sp. BAV1]
 gi|146270436|gb|ABQ17428.1| phage integrase family protein [Dehalococcoides sp. BAV1]
          Length = 368

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 50/303 (16%), Positives = 103/303 (33%), Gaps = 44/303 (14%)

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGV 123
           + + TTL   +  + K   W +LA  +   +E    + II   G     ++  +HI+   
Sbjct: 61  KPEKTTLAEYLERWLKDYVWPNLAPRTAEGYEHIIRRYIIPGLGKIQLAQLKPEHIQKYY 120

Query: 124 ESR---------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
            ++           +P +       +    K AV+ E +  NP  +++ P+ +   +   
Sbjct: 121 ANQLSIGGDKGIGLSPRTVRHHHMCLHSALKTAVKWELLIRNPLDAIDPPRCQKHEMHTL 180

Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---------------- 218
           T+E + +     +E +     F   L++GLR S+        +                 
Sbjct: 181 TEEAVHKVLEIANE-TPYFTLFYLALFTGLRRSELLALKWSAVDLIMCQLSVSRSLHVLS 239

Query: 219 NNIFSIKTQKT-GTIITVELPD-------------GFMKLLAMTPIGKETFFINN-DKQK 263
                 +  KT  +  +V L                  K+LA + +  + F   N D + 
Sbjct: 240 GGEIITRQTKTARSTRSVALSPSTVQVLKDHRDKQQAFKILAGSHLNNDDFIFTNIDGKP 299

Query: 264 MNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ET 321
           +     +  +     K G+N    H  R   A++    G     +    G  ++    +T
Sbjct: 300 LLPNTITHNWIKLIRKTGLNGIRLHDARHTHASLMLKQGVHPKIVQERLGHSSIQVTLDT 359

Query: 322 YTK 324
           Y+ 
Sbjct: 360 YSH 362


>gi|330991502|ref|ZP_08315453.1| Tyrosine recombinase xerC [Gluconacetobacter sp. SXCC-1]
 gi|329761521|gb|EGG78014.1| Tyrosine recombinase xerC [Gluconacetobacter sp. SXCC-1]
          Length = 390

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 63/351 (17%), Positives = 116/351 (33%), Gaps = 24/351 (6%)

Query: 19  GKIIY--YFRKGHGRRIRLPYPHESTFIPAYMS-------ALTGSTPKREYINSPRKKPT 69
           G+ +Y  ++R G   R      H S +             A   +        S  +K  
Sbjct: 39  GRKVYVIHYRSGGRLRRYTIGQHGSPWTADLARDEAIRILARVHTGENPADKRSDDRKAM 98

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKH 128
           T+      +        L   +R  +    +  I+ K G +    ++   +     S +H
Sbjct: 99  TVTSFSRRFLDEYVDVHLKPRTRGEYRRSVELFIVPKFGSWRMADLSRAEVVEFHGSFRH 158

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAI--NPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            P  A + L  +  +F  A          NPC  V+R + +       T+E+  +  +  
Sbjct: 159 IPYQANRTLGVLSKMFSLADLWGIRQDGVNPCRGVKRYREERRERFL-TREEYARLGNSL 217

Query: 187 SEGSQPR----LAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDG 240
            E ++       A   L  +G R  +       H+        +   KTG   TV+L   
Sbjct: 218 DEATEDMPEAARAIRLLALTGCRLREIQTLQWTHVWLNEAELRLPDSKTGAK-TVQLGTA 276

Query: 241 FMKLLAMTPI-GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISA 298
            + +L  TP      + I   K     T     ++     AG++    H +R   A+ + 
Sbjct: 277 AVDVLKATPRLPDNPYVITGRKAGEYLTDLQKPWRRIRKAAGLDGVRLHDLRHSFASDAL 336

Query: 299 DAGATAHELMATYGWKTVDQAETYT--KGADRIRLGIKNSRRISSVVDSDD 347
           + GA    +    G   +     Y   K  +  R   + ++RISS +    
Sbjct: 337 EMGADLTMIGRMLGHSDIKTTSRYAHLKRENVKRSTDQVAQRISSALTDTR 387


>gi|298482054|ref|ZP_07000243.1| tyrosine recombinase [Bacteroides sp. D22]
 gi|298271918|gb|EFI13490.1| tyrosine recombinase [Bacteroides sp. D22]
          Length = 376

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 55/295 (18%), Positives = 100/295 (33%), Gaps = 25/295 (8%)

Query: 46  AY--MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII 103
           AY   SAL  + PK+    SP   P         Y ++      + ++  ++  YF +  
Sbjct: 72  AYINYSALKNTLPKKSGKTSPAIPPG--------YAETLRQLRYSEHTVRAYTVYFREFQ 123

Query: 104 RKSGDFDYRKITTKHIRSGVESRKHTPS----SAIQFLTSMRVLFKWAVRQEYVAINPCL 159
           +     + R I  + I + +     T           + S++  F+  + QE      C 
Sbjct: 124 QYFAGRNLRYIRPEEINAYIVHLIDTRRISSCQQNLRINSIKFYFEKVLGQERK----CY 179

Query: 160 SVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ- 218
            V+R KR+       +KE+++          +    F  L  +GLR S+        +  
Sbjct: 180 EVKRAKRERTLPDVLSKEEIKSILDATGPDIRLFCMFSLLYSAGLRISELLDLKPHDINV 239

Query: 219 -NNIFSIKTQKTGTIITVELPDGFMKLLAMTPI---GKETFFINNDKQKMNATQFSIWFK 274
             ++  ++  K        L    ++ L         +E  F     +    +  S   K
Sbjct: 240 SRSLIRVRQGKGRKDRYTLLSKPLVRKLTEYTKLYKPQEWLFERYKGEPFTESIVSKKLK 299

Query: 275 AKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
             A +AG+ K    H +R   AT   + G     +    G   +   E Y   AD
Sbjct: 300 EAAKEAGITKRVYPHLLRHSFATHLIEQGTDLKIVKELLGHNQLKTTEMYVHIAD 354


>gi|167579401|ref|ZP_02372275.1| site-specific tyrosine recombinase XerC [Burkholderia thailandensis
           TXDOH]
          Length = 306

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 42/280 (15%), Positives = 88/280 (31%), Gaps = 32/280 (11%)

Query: 75  ISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTP 130
           I++Y  +  H   L+ ++  ++     ++ + +       +T   +R  V        + 
Sbjct: 6   IADYLSNLRHVRKLSDHTLRAYAHELGELRKLANGRPLESLTAVDMRGAVARAHAGGLSA 65

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
            S    L++ R  ++W  +   +  NP  +V  PKR     +  + +D        + G+
Sbjct: 66  RSISHRLSAWRAFYRWFSQHVEMNANPVAAVRAPKRAKTLPKALSVDDAAALMDAPTAGT 125

Query: 191 ----QPRLAFEFLLYSGLRCSDSCRA-------------GVQHLQNNIFSIKTQKTGTII 233
               +     E    SGLR ++                 G   L     +++  K     
Sbjct: 126 AEHLRDHAILELFYSSGLRLAELIGLDVEYTKDGDYRSEGWLDLAEAEVTVR-GKGDKER 184

Query: 234 TVELPDGFMKLLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284
            V +    +  L                  F++    +M+        K  A  AG+   
Sbjct: 185 KVPVGRKAIDALNAWLAVRGEFVKRDARPLFLSVRGNRMSPGVVRERVKRAALAAGIPAN 244

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
              H +R   AT    +      +    G  ++   + YT
Sbjct: 245 VHPHVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYT 284


>gi|325204823|gb|ADZ00277.1| tyrosine recombinase XerC [Neisseria meningitidis M01-240355]
          Length = 301

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 38/274 (13%), Positives = 89/274 (32%), Gaps = 20/274 (7%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD---YRKITTKHIRSGVES-- 125
           L   +  Y ++      + ++  ++     +++    +         T       +    
Sbjct: 6   LAAYLDAYLENIVREGKSEHTVAAYRRDLQELLALLEEMPSANPSNCTRGDFVQALRRLS 65

Query: 126 -RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
            R     +  + L+S R    W V++  +  +P   ++ PK+     +   +E + Q   
Sbjct: 66  GRGLGERTLARKLSSWRQYCVWLVKRGLMHADPTADIKPPKQPERIPKALPQECLNQMLD 125

Query: 185 F-----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELP 238
                  +   +    FE +  SGLR S+        +  +   ++    G     V L 
Sbjct: 126 LPVDDSDALALRDHALFELMYGSGLRLSEIHGLDTGDVWLDEGWVRVTGKGRKQRQVPLT 185

Query: 239 ----DGFMKLL--AMTPIGKETFFINNDKQKMNATQFSIWFKAKATK--AGVNKSAHGVR 290
               +     L    T    +  F   +  +++  Q     ++ A +   G + S H +R
Sbjct: 186 GKSVEALKNYLPLRQTASDGKALFTGRNGTRLSQRQIQKRLESWAAQNGDGRHISPHMMR 245

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              A+    +      +    G  ++   + YTK
Sbjct: 246 HSYASHLLQSSRDIRAVQELLGHSSLSTTQIYTK 279


>gi|114327281|ref|YP_744438.1| integrase/recombinase xerD [Granulibacter bethesdensis CGDNIH1]
 gi|114315455|gb|ABI61515.1| integrase/recombinase xerD [Granulibacter bethesdensis CGDNIH1]
          Length = 290

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 41/273 (15%), Positives = 90/273 (32%), Gaps = 14/273 (5%)

Query: 75  ISEYRKS-AHWGSLAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVESRKH 128
           I  + +  A     A N+ +++ +            +       +   +   +      +
Sbjct: 5   IESFLEMLAAERGAARNTLLAYGTDLRDWSGYAARHRVDPLHADEAALRGYLAAQSGAGN 64

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
            P +  + L+++R  +++ + Q   + +P   ++ PK      +   + ++         
Sbjct: 65  GPRTQSRRLSALRQFYRFLLEQGTRSDDPTALLDAPKLPRSLPKYLDEAEVDALLQAAPA 124

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPDGFMKLLAM 247
                 A E L  +GLR S+      +  + +        K G    V +    +  +A 
Sbjct: 125 EPAAHAALEILYSTGLRVSEVLALPARAFRGDAPMMTVRGKGGRERMVPVSAAAISAVAA 184

Query: 248 TPIGKE----TFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADA 300
              G E     F   +  + M    F++  K  A +AG++    S H +R   A+     
Sbjct: 185 MRSGAEQSRWLFPGRDPAKPMTRQGFALMLKRVALQAGLDPARVSPHVLRHCFASHLLAR 244

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           GA    L    G   +   + YT         +
Sbjct: 245 GADLRSLQMLLGHVDIATTQIYTHVLSERLRAL 277


>gi|84685885|ref|ZP_01013781.1| Phage integrase [Maritimibacter alkaliphilus HTCC2654]
 gi|84665978|gb|EAQ12452.1| Phage integrase [Rhodobacterales bacterium HTCC2654]
          Length = 379

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 52/331 (15%), Positives = 99/331 (29%), Gaps = 31/331 (9%)

Query: 21  IIYYFRKGHGRRIRLPYPHES--TFIPAYMSAL-----TGSTPKREYINSPRKKPTTLKW 73
           + Y  R     R +         +F  A   A+                   +K  T+  
Sbjct: 40  VQYRNRTTGRSRRQTIGQAGPLLSFANARKEAMRLLSEAAQGGDPVESKQSARKAETIAD 99

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQ-------IIRKSGDFDYRKITTKHIRSGVESR 126
           L  +Y        L    +   +S  +        II K G     ++  + I++   S 
Sbjct: 100 LADQYLT------LHAKPKKREKSVANDVSMLNGIIIPKLGKQKVAQVGHRDIQALHNSL 153

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
           + TP  A + L  +  +F  +VR  +   NP   VER   +    R  + E++ +F +  
Sbjct: 154 RETPYRANRTLALLSKMFALSVRWGWRQDNPAKGVERFPEEKR-YRWLSDEELARFVAEL 212

Query: 187 SEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT----QKTGTIITVELPD- 239
           +E    R   A    L +G R  +   +                   K      + L + 
Sbjct: 213 NEHPNQRAANAIRLQLLTGARIGEVLTSKWSDFDLVRGVWVKPSHHTKQKRTEHLPLSNT 272

Query: 240 --GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATI 296
               ++ +  +      +            +   +++   T A + +   H  R   A+ 
Sbjct: 273 AISLLQTIQESADLNHPYVFPGRNPGQPLKELKRFWQNVTTAAELSDYRIHDNRHTHASH 332

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGAD 327
               G T   +    G       + Y   AD
Sbjct: 333 LVSNGLTLPVVGRLLGHTNPLTTQRYAHLAD 363


>gi|160945433|ref|ZP_02092659.1| hypothetical protein FAEPRAM212_02955 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443164|gb|EDP20169.1| hypothetical protein FAEPRAM212_02955 [Faecalibacterium prausnitzii
           M21/2]
          Length = 357

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 49/310 (15%), Positives = 94/310 (30%), Gaps = 24/310 (7%)

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKIT 115
           R+   + +  P T++     ++K     +L+  S   + +      R  GD       IT
Sbjct: 39  RDLRPAAKANP-TIQQAFERFQKYNRLKNLSQGSLDFYVAKGRSFFRFLGDTEQPINTIT 97

Query: 116 TKHIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
            + +   +   K      ++    L  +R    W + + Y+   P   +   +       
Sbjct: 98  EETVEDYIFYMKDQQLHDTTINTNLRMVRAFLYWCMEKGYLEKYP---IRLVRADDPIKE 154

Query: 173 PWTKEDMQQFKSFWSEGS------QPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSI 224
           P+T +++Q+        +      +  +   FLL +G R S      +  L         
Sbjct: 155 PYTTDELQKLLKEPDCKTCSFAEYRNWVIVNFLLGTGCRASTLLNLQIGDLDLFAGTVFF 214

Query: 225 KTQKTGTIITVELPDGFMKLL-----AMTPIGKETFFINNDKQKMNATQFSIWFKAKATK 279
           +  K      V L    +K++       T       F++    +M               
Sbjct: 215 RHMKARNQQIVPLSKALVKIMEEYLEHRTSDPTAPLFVSEYGNQMTLNSLGNAIWNYNHS 274

Query: 280 AGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSR 337
            GV K S H  R   A +   AG     L    G   +     Y    AD +R       
Sbjct: 275 RGVEKTSMHLFRHTYAKLYIQAGGDPFRLQKLLGHADLTMTRRYVALYADDLRANYDALN 334

Query: 338 RISSVVDSDD 347
            +  +   + 
Sbjct: 335 PLEQLTRQNR 344


>gi|254452119|ref|ZP_05065556.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198266525|gb|EDY90795.1| phage integrase [Octadecabacter antarcticus 238]
          Length = 317

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 44/258 (17%), Positives = 84/258 (32%), Gaps = 19/258 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLF 144
            +L   S+ S      +     G       T   ++   +    +  S      +M  + 
Sbjct: 39  RNLGPASQSSHLRACKRFAAWLGRSPETA-TPDDVKYFQQHLIESGVSICTRNQTMTGV- 96

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGL 204
           K+ +R      +    +   K   +     +K+++++  +      + R+        G+
Sbjct: 97  KFLLRVTLRRHDLVAEIFHLKEPVKVPLVLSKKEIKRILAMAPS-LKARVMLSLAYGCGM 155

Query: 205 RCSDSCRAGVQHLQNN--IFSIKTQKTGTIITVELPDGFMKLLAMT------------PI 250
           R  +  R  V  + ++  I  I   K      V LP   + LL               P 
Sbjct: 156 RAGEVVRLKVGDIDSDQEIIRIVQSKGRKDRIVMLPVDILSLLRDWWQERPTGQDKDVPA 215

Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELM 308
            +   F     + ++A Q S  FK  A +AG+ K  + H +R   AT   + G     + 
Sbjct: 216 PERVLFPGYRGKHLSARQISRLFKETAREAGITKPVTLHTLRHSFATHLLERGVDIRVIQ 275

Query: 309 ATYGWKTVDQAETYTKGA 326
           A  G   +     Y   A
Sbjct: 276 ALLGHSKLTTTARYASVA 293


>gi|148977142|ref|ZP_01813782.1| site-specific recombinase, phage integrase family protein
           [Vibrionales bacterium SWAT-3]
 gi|145963611|gb|EDK28873.1| site-specific recombinase, phage integrase family protein
           [Vibrionales bacterium SWAT-3]
          Length = 434

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 46/275 (16%), Positives = 98/275 (35%), Gaps = 20/275 (7%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKHT 129
              L+ E           ++++ +  S   + ++ + G F    I + H+    +    +
Sbjct: 89  FDALVKEEWADKVCKGWKLSTQGTASSALKKNLLPEFGRFPVSCIDSCHVHRWFDELSQS 148

Query: 130 -PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
              +A + L  +R +FK+AV+Q Y   NPC  +++  RK +  R  + +++ +     + 
Sbjct: 149 YAGTANRNLDVLRSIFKYAVKQGYCIDNPCDGLKQ-NRKRKLNRFLSLDELARLHKALTV 207

Query: 189 GSQPR-------LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241
            SQ            E +L +G R S+        ++   + +   KTG  + V +    
Sbjct: 208 VSQQGELEACCCQVLELVLLTGCRISEVTGLQWSFVKGREWHLPDSKTGAKV-VYVGKEA 266

Query: 242 MKLLAMTP---------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKF 292
            +LL+  P            + F         +     +W + +A     +   H +R  
Sbjct: 267 QQLLSDIPQQVGAHRSESHDDVFTPLRRFVSRSTKVSMVWQQVRALAHIEDVRIHDLRHT 326

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
            A+ +   G     +    G   +     Y    D
Sbjct: 327 FASYAVLEGYPIPMVSKLLGHTRISSTLRYAHVDD 361


>gi|330997069|ref|ZP_08320931.1| integron integrase [Paraprevotella xylaniphila YIT 11841]
 gi|329571567|gb|EGG53249.1| integron integrase [Paraprevotella xylaniphila YIT 11841]
          Length = 376

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 55/295 (18%), Positives = 100/295 (33%), Gaps = 25/295 (8%)

Query: 46  AY--MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII 103
           AY   SAL  + PK+    SP   P         Y ++      + ++  ++  YF +  
Sbjct: 72  AYINYSALKNTLPKKSGKTSPAIPPG--------YAETLRQLRYSEHTVRAYTVYFREFQ 123

Query: 104 RKSGDFDYRKITTKHIRSGVESRKHTPS----SAIQFLTSMRVLFKWAVRQEYVAINPCL 159
           +     + R I  + I + +     T           + S++  F+  + QE      C 
Sbjct: 124 QYFAGRNLRYIRPEEINAYIVHLIDTRRISSCQQNLRINSIKFYFEKVLGQERK----CY 179

Query: 160 SVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ- 218
            V+R KR+       +KE+++          +    F  L  +GLR S+        +  
Sbjct: 180 EVKRAKRERTLPDVLSKEEIKSILDATGPDIRLFCMFSLLYSAGLRISELLDLKPHDINV 239

Query: 219 -NNIFSIKTQKTGTIITVELPDGFMKLLAMTPI---GKETFFINNDKQKMNATQFSIWFK 274
             ++  ++  K        L    ++ L         +E  F     +    +  S   K
Sbjct: 240 SRSLIRVRQGKGRKDRYTLLSKPLVRKLTEYTKLYKPQEWLFERYKGEPFTESIVSKKLK 299

Query: 275 AKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
             A +AG+ K    H +R   AT   + G     +    G   +   E Y   AD
Sbjct: 300 EAAKEAGITKRVYPHLLRHSFATHLIEQGTDLKIVKELLGHNQLKTTEMYVHIAD 354


>gi|254452582|ref|ZP_05066019.1| phage integrase [Octadecabacter antarcticus 238]
 gi|254454231|ref|ZP_05067668.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198266988|gb|EDY91258.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198268637|gb|EDY92907.1| phage integrase [Octadecabacter antarcticus 238]
          Length = 320

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 44/258 (17%), Positives = 84/258 (32%), Gaps = 19/258 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLF 144
            +L   S+ S      +     G       T   ++   +    +  S      +M  + 
Sbjct: 39  RNLGPASQSSHLRACKRFAAWLGRSPETA-TPDDVKYFQQHLIESGVSICTRNQTMTGV- 96

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGL 204
           K+ +R      +    +   K   +     +K+++++  +      + R+        G+
Sbjct: 97  KFLLRVTLRRHDLVAEIFHLKEPVKVPLVLSKKEIKRILAMAPS-LKARVMLSLAYGCGM 155

Query: 205 RCSDSCRAGVQHLQNN--IFSIKTQKTGTIITVELPDGFMKLLAMT------------PI 250
           R  +  R  V  + ++  I  I   K      V LP   + LL               P 
Sbjct: 156 RAGEVVRLKVGDIDSDQEIIRIVQSKGRKDRIVMLPVDILSLLRDWWQERPTGQDKDVPA 215

Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELM 308
            +   F     + ++A Q S  FK  A +AG+ K  + H +R   AT   + G     + 
Sbjct: 216 PERVLFPGYRGKHLSARQISRLFKETAREAGITKPVTLHTLRHSFATHLLERGVDIRVIQ 275

Query: 309 ATYGWKTVDQAETYTKGA 326
           A  G   +     Y   A
Sbjct: 276 ALLGHSKLTTTARYASVA 293


>gi|18310077|ref|NP_562011.1| integrase/recombinase [Clostridium perfringens str. 13]
 gi|18144756|dbj|BAB80801.1| probable integrase/recombinase [Clostridium perfringens str. 13]
          Length = 338

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 37/304 (12%), Positives = 92/304 (30%), Gaps = 48/304 (15%)

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIR 120
           +K    L  ++ +Y     +  L   +  ++E     + +   D         +  +HIR
Sbjct: 6   KKNKNELLDILEDYMTDCKYRDLRRTTIRAYEQSLRLLFKFLEDDYKVIYVEDVKEEHIR 65

Query: 121 SGVESRKHTPS----------------------------SAIQFLTSMRVLFKWAVRQEY 152
           + ++  K                                +   +L ++++ F W    + 
Sbjct: 66  NYIDFTKERGKYSYVANENNINSNVPQNRGDFGKKVSLCTLDNYLGNIKMFFTWCKDNKL 125

Query: 153 VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSD 208
           ++ +P   ++R K   +     T ++  +             +  +  + L+ +G+R  +
Sbjct: 126 ISKDPSFKIKRIKYSRKAKAEITIDEFNKLLKSLDLTLFSEYRDYIVIQLLMDTGMRVGE 185

Query: 209 SCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGFMKLLAMTP------IGKETFFIN 258
                 + +         S +  K      V   +   ++L          +     F+ 
Sbjct: 186 CLELREEDIDIRNKTIFISGEIAKGRRDRYVFFSNTMQRMLQKWLNYKDRYVESNYIFVT 245

Query: 259 NDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTV 316
           N   K     F    +    KA ++K  + H +R   A     +G   + L    G   +
Sbjct: 246 NRGGKYQVHSFEKHMRNYLKKAKIDKQITPHTLRNNFAKRFLMSGGDIYTLSRLLGHSDI 305

Query: 317 DQAE 320
              +
Sbjct: 306 RTTQ 309


>gi|172062036|ref|YP_001809688.1| site-specific tyrosine recombinase XerC [Burkholderia ambifaria
           MC40-6]
 gi|171994553|gb|ACB65472.1| tyrosine recombinase XerC [Burkholderia ambifaria MC40-6]
          Length = 306

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 45/280 (16%), Positives = 89/280 (31%), Gaps = 32/280 (11%)

Query: 75  ISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTP 130
           I+ Y  +  H   L+ ++  ++    D++ + +       +T   +R  V        + 
Sbjct: 6   IAAYLSNLKHVRQLSEHTLRAYTHELDELKKLAAGRPLDTLTAVDMRGAVARAHAGGLSA 65

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFW 186
            S    L++ R  ++W  +   +  NP  +V  PKR     +  + +D    M    +  
Sbjct: 66  RSISHRLSAWRAFYRWLAQHIEMPANPVAAVRAPKRPKTLPKALSVDDASALMDAPLAGT 125

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRA-------------GVQHLQNNIFSIKTQKTGTII 233
           +EG +     E    SGLR ++                 G   L     +++  K     
Sbjct: 126 TEGIRDHAILELFYSSGLRLAELVGLDVRYTQADGYRSAGWLDLAEAEVTVR-GKGNKER 184

Query: 234 TVELPDGFMKLLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284
            V +    +  L                  F++    +M         K  A  AG+   
Sbjct: 185 KVPVGRKAIDALNAWLAVRGEFVKHDPHPLFVSVRGNRMAPGVVRERVKRAALAAGIPAN 244

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
              H +R   AT    +      +    G  ++   + YT
Sbjct: 245 VHPHVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYT 284


>gi|307823075|ref|ZP_07653305.1| tyrosine recombinase XerC [Methylobacter tundripaludum SV96]
 gi|307735850|gb|EFO06697.1| tyrosine recombinase XerC [Methylobacter tundripaludum SV96]
          Length = 302

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 31/261 (11%), Positives = 88/261 (33%), Gaps = 27/261 (10%)

Query: 88  AVNSRISFESYFDQIIRKSGDFD------YRKITTKHIRSGVESRKHTPSSAIQFLTSMR 141
           + ++  +++     + R   D         +    +   +    +  +  S  + L+++R
Sbjct: 23  SEHTVKNYQRDLKHLSRYCTDKPITRWADLKHTDIRAHIASRHRKGLSSKSLQRELSAIR 82

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS------QPRLA 195
             + + +++    +NP   ++ PK+  +  +     D+ Q       G+      +    
Sbjct: 83  SFYNYLLKKGQTDVNPAQHIQAPKQARKLPKTL---DVDQLSGLLEAGASSLLEIRDLAM 139

Query: 196 FEFLLYSGLRCSD--SCRAGVQHLQNNIFSIKTQKTGTIITVE--------LPDGFMKLL 245
           FE    SGLR S+  +       L ++  +++  K G    +         + +   +  
Sbjct: 140 FELFYSSGLRLSELSALDLTDLDLPDSTLTVRIGKGGKSRVLPVGSKAVTAIENWLQQRA 199

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGAT 303
              P  +   F++    ++      +  +      G+  +   H +R   A+   ++   
Sbjct: 200 VKIPAIEPALFVSTRGTRLGQRNIELRLERWCKAKGIAEHIHPHMLRHSFASHLLESSHD 259

Query: 304 AHELMATYGWKTVDQAETYTK 324
              +    G   +   + YT 
Sbjct: 260 LRAVQELLGHSNISTTQIYTH 280


>gi|189460548|ref|ZP_03009333.1| hypothetical protein BACCOP_01189 [Bacteroides coprocola DSM 17136]
 gi|189432792|gb|EDV01777.1| hypothetical protein BACCOP_01189 [Bacteroides coprocola DSM 17136]
          Length = 388

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 87/225 (38%), Gaps = 12/225 (5%)

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           + +S + +   +R     A     +  NP   +E  K+        T E+++   +   +
Sbjct: 167 SQNSKVSYFNKLRACINQAFEDRIIPHNPLRGIEGFKQAETERSYLTLEEVKAMAAAQCK 226

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGFMKL 244
               + AF F   +GLR SD  +   + +Q          K +KTG    +++    ++ 
Sbjct: 227 YPALKNAFMFSCLTGLRKSDIEKLRWREVQQQGDFTRIIFKQKKTGGQEYLDINKQAVQY 286

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302
           + +     +  F+     K +A   +   +  A +AG+ K  + H  R   A +  D GA
Sbjct: 287 MGVRREPDDRVFV---GFKYSAYMIAE-LRMWANRAGITKDITFHSGRHTFAVLMLDLGA 342

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
             + +    G K +   + Y K  D+ +   +    I  +  +DD
Sbjct: 343 EIYTVQKLLGHKELSTTQIYAKILDKKK--QEAVAMIPDIFGADD 385


>gi|134096115|ref|YP_001101190.1| tyrosine recombinase xerC [Herminiimonas arsenicoxydans]
          Length = 296

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 48/285 (16%), Positives = 93/285 (32%), Gaps = 40/285 (14%)

Query: 87  LAVNSRISFESYFDQIIRKSGDFD-------YRKITTKHIRSGVESRKHTPSSAIQFLTS 139
           ++  +  S+     +++  +   D             +   + + ++     S  + L++
Sbjct: 1   MSPLTITSYRRDLLELLALATASDGNAALSAISHFQIRKFAAQLHAKGLNARSIARKLSA 60

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP------- 192
            R  F W   Q  VA NP   ++ PKR     +    +D  +  S  S G          
Sbjct: 61  WRGFFTWLSEQNAVASNPVDGIKAPKRNKPLPKALAADDAVRLVSSNSPGKNADATMQLC 120

Query: 193 -RLAFEFLLYSGLRCSDSCRA-------------GVQHLQNNIFSIKTQKTGTIITVELP 238
            R  FE L  SGLR S+                 G      +  ++ T K   + +  + 
Sbjct: 121 NRAMFELLYSSGLRASELVGLDLKYAQENRYTSAGWIDFDAHE-AMVTGKGSKMRSAPIG 179

Query: 239 DGFMKLLAMTPIGKET--------FFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHG 288
              +  L      ++T         F++    +++A    +  KA A   G+      H 
Sbjct: 180 QPAIDALKAWLAVRDTLLKLDPHPLFLSERGTRISARVLQLRLKAHAQAVGLPMDVHPHV 239

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           +R   A+    +      +    G  ++   + YT   D  RL  
Sbjct: 240 LRHSFASHVLQSSGDLRAVQEMLGHASISATQIYT-SLDFQRLAQ 283


>gi|119503715|ref|ZP_01625797.1| site-specific tyrosine recombinase XerC [marine gamma
           proteobacterium HTCC2080]
 gi|119460223|gb|EAW41316.1| site-specific tyrosine recombinase XerC [marine gamma
           proteobacterium HTCC2080]
          Length = 304

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 97/278 (34%), Gaps = 23/278 (8%)

Query: 70  TLKWLISEYRKS-AHWGSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSG--- 122
           +L      +         ++ ++   +     +       S       +    +R+    
Sbjct: 4   SLAAACDVFLAYQRDIRQVSRHTLEGYGRDIRRFVSFCAVSNKQSATSVRESDVRNWVSQ 63

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           +  +  +P+S  + L+S+R L+++   ++    NP L V+ PKR     +    + +   
Sbjct: 64  LHRQGLSPTSIQRALSSVRSLYRFLSERDVTLGNPALGVQAPKRPRNLPKTLDADSVNHL 123

Query: 183 KSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVEL- 237
             +  E +   +     E L  SGLR S+   A +  L+ N      T K     T+ + 
Sbjct: 124 FQWQPETTLDFRDMAIAELLYSSGLRLSELVSANINDLEFNERMITVTGKGRKTRTLPVG 183

Query: 238 ---PDGFMKLLAMTPIGKE------TFFINNDKQKMNATQFSIWFKAKATKAGVNKS--A 286
                   K L++ P+G E        F++    +++     +  +  A  + +      
Sbjct: 184 GPALTAVTKWLSLRPLGNEDVGPASPLFVSARGTRISPRSVQLRLQRMARFSALPGKLHP 243

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           H +R   A+   ++      +    G   +   + YT 
Sbjct: 244 HMLRHSFASHMLESSGDLRAVQELLGHSDISTTQIYTH 281


>gi|116333446|ref|YP_794973.1| integrase [Lactobacillus brevis ATCC 367]
 gi|116098793|gb|ABJ63942.1| tyrosine recombinase XerC subunit [Lactobacillus brevis ATCC 367]
          Length = 311

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 34/268 (12%), Positives = 86/268 (32%), Gaps = 28/268 (10%)

Query: 85  GSLAVNSRISFESYFDQ----IIRKSGDFDYRKITTKHIRSGVESRKHT---PSSAIQFL 137
              +  +  ++     +    +    G+  +  I    +   +          ++  + L
Sbjct: 16  RQYSAETVKAYHEDLSEFVQFLADNGGEKPWTAIDQLDVEVYLSDLYDRHYARTTIARKL 75

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA-- 195
           +++R L+ + +       +P   V+  + +    R + + +M    +  +     +LA  
Sbjct: 76  STLRSLYSFLMSNGQAQDDPFAYVQLKRHQNHLPRFFYEREMTALFTAAAANPNEQLATR 135

Query: 196 ----FEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVEL----PDGFM---- 242
                E L  +G+R S+     +  +  +    +   K      V       D       
Sbjct: 136 DTALLEVLYGTGIRVSECVNLALSEIDFDGRIMLIHGKGNKERYVPFGHYASDALQTYFD 195

Query: 243 ----KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATI 296
                L+A         FIN+  Q++ +   +        ++ +  +   H +R   AT 
Sbjct: 196 TARTPLMAQYQQDHPYVFINHRGQQLTSAGVTYLLNQIIKRSTLTTDIHPHMLRHTFATH 255

Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324
             + GA    +    G  ++   + YT 
Sbjct: 256 LLNRGADLRSVQELLGHSSLSTTQIYTH 283


>gi|229015108|ref|ZP_04172164.1| integrase/recombinase [Bacillus mycoides DSM 2048]
 gi|228746161|gb|EEL96108.1| integrase/recombinase [Bacillus mycoides DSM 2048]
          Length = 308

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 39/262 (14%), Positives = 97/262 (37%), Gaps = 15/262 (5%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--TPSSA 133
            ++ K  +  +L   +   +++ F    +K  +    +   K +   +   K     ++ 
Sbjct: 26  EKFFKDCYLRNLRPATIGYYKNEF-HGAKKIINKQLVEWEQKDVEDLILKSKQLMKVTTI 84

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-----E 188
              L ++R  + +  + + +  NP  +++  + + + I     +++++            
Sbjct: 85  NTRLRALRSFYNFLDKHKLIDKNPMKNIKLLRDRQKTIETLDNQEIEKLIKTIRKQKTFV 144

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA-- 246
           G +  +     L +G+R S+     V+ +++N   I++ K     TV L D   + L   
Sbjct: 145 GFRDEVILLVFLDTGVRLSELIGINVEDVRHNKLIIRSTKNLFERTVYLSDTTQERLESY 204

Query: 247 ---MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301
                 +     FI+ + ++++             +A ++K  S H  R   A     +G
Sbjct: 205 IKVRGEVATNKLFISQNNKELHPHSIQTRLTKYGKEAKISKRVSPHTFRHTMAKRMIVSG 264

Query: 302 ATAHELMATYGWKTVDQAETYT 323
             A  LM   G   +   + Y 
Sbjct: 265 LDAFSLMHLLGHTDITVTKRYV 286


>gi|68171293|ref|ZP_00544693.1| Phage integrase:Phage integrase, N-terminal SAM-like [Ehrlichia
           chaffeensis str. Sapulpa]
 gi|88658163|ref|YP_506998.1| tyrosine recombinase XerD [Ehrlichia chaffeensis str. Arkansas]
 gi|67999274|gb|EAM85923.1| Phage integrase:Phage integrase, N-terminal SAM-like [Ehrlichia
           chaffeensis str. Sapulpa]
 gi|88599620|gb|ABD45089.1| tyrosine recombinase XerD [Ehrlichia chaffeensis str. Arkansas]
          Length = 309

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 38/278 (13%), Positives = 86/278 (30%), Gaps = 33/278 (11%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVESRKHTPSSAIQFLTS 139
             ++ N+  S+ +    + +     D           +     +  + +  ++  + +++
Sbjct: 18  KHVSHNTYQSYRTDLLGLCKFIDRNDLLLTDASIHELQDYIRFLYEKGYKANTVSRKISA 77

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-----SEGSQPRL 194
           ++ L+ +  R   +  +P + ++ PK      +  + E++             +G +   
Sbjct: 78  IKNLYGFLYRDNIIENDPTVYLDSPKLSRSLPKTLSYEEVNILLDVAALDVSPDGRRINA 137

Query: 195 AFEFLLYSGLRCSDSCRAG----VQHLQNNIFSI----KTQKTGTIITVELPDGFMKLLA 246
               L  SG+R S+          + L +    I       K      + L    +  + 
Sbjct: 138 IVNILYSSGIRISELVYLKFREVREALDDGDTEICHMKIQGKAKKERIILLNSSAVTSIQ 197

Query: 247 MTPIGKETFFINNDK------------QKMNATQFSIWFKAKATKAGVNK---SAHGVRK 291
                 E F  N  K              +   +     K  A  AG+N    S H +R 
Sbjct: 198 KYMEVYEYFIPNGYKMSQWLFPGTKFDNPVTRQRVGQLLKNLAMNAGINVTHVSPHKLRH 257

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             AT   + G+    +    G   +   + YT  A   
Sbjct: 258 SFATHLLNNGSDIVFIQKMLGHANLATTQIYTHVASER 295


>gi|325068736|ref|ZP_08127409.1| tyrosine recombinase XerD [Actinomyces oris K20]
          Length = 307

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 46/277 (16%), Positives = 98/277 (35%), Gaps = 37/277 (13%)

Query: 85  GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVE--------SRKHTPSSA 133
             L+ ++  ++E    + +R     G    ++++   +   +E        +R    SSA
Sbjct: 12  RGLSPHTLSAYERDLGRYLRYLRSAGISAPQEVSRNDVAGFLEVLRTGSDGARPLASSSA 71

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-----SE 188
            + +T++R   K+ + +   + +P  +V  P+      +    +++++            
Sbjct: 72  SRTVTAVRGWHKFLLAEGTTSEDPSATVRPPQPGRRLPKALGVDEVRRLLEAAGVDDSPV 131

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVEL-------PDG 240
             + R   E L  +G R S++    V  L  +   ++   K      V +        D 
Sbjct: 132 SLRDRALLEVLYATGARISEAVGLVVDDLDTDSKLLRLFGKGRKERVVPMGAYAWEALDA 191

Query: 241 F----MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---------NKSAH 287
           +      +LA    G    F+N   + ++        +  A +AG+           S H
Sbjct: 192 YLVRGRPVLAEKGRGVPQVFLNTLGRPLSRQSAWAVLQQAAERAGLIGTDGADERRISPH 251

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            +R   AT     GA    +    G  +V   + YTK
Sbjct: 252 TLRHSFATHLLAGGADVRVVQEMLGHASVTTTQIYTK 288


>gi|213585520|ref|ZP_03367346.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
          Length = 259

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 39/241 (16%), Positives = 83/241 (34%), Gaps = 23/241 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESR---KHTPSSAIQFLTS 139
            +LA N+  ++      ++                 +++ +  R    +  +S+ + L++
Sbjct: 19  RNLAENTLSAYRRDLSMVVAWLHHRGKTLATAQADDLQTLLAERVEGGYKATSSARLLSA 78

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195
           MR  F+   R++Y   +P   +  PK      +  ++  +++             + +  
Sbjct: 79  MRRFFQHLYREKYREDDPSAQLASPKLPQRLPKDLSEAQVERLLQAPLIDQPLELRDKAM 138

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKET 254
            E L  +GLR S+     +  +      ++   K      V L +  +  L         
Sbjct: 139 LEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRP 198

Query: 255 FFIN----------NDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG 301
           + +N             Q+M    F    K  A  AG++    S H +R   AT   + G
Sbjct: 199 WLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHG 258

Query: 302 A 302
           A
Sbjct: 259 A 259


>gi|84517237|ref|ZP_01004592.1| Phage integrase [Loktanella vestfoldensis SKA53]
 gi|84508912|gb|EAQ05374.1| Phage integrase [Loktanella vestfoldensis SKA53]
          Length = 401

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 62/342 (18%), Positives = 117/342 (34%), Gaps = 28/342 (8%)

Query: 19  GKIIYYFR----KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           G   YY R    +   R I+L    + T   A              ++  +++    K L
Sbjct: 41  GGRTYYLRYSDDRSKTRYIKLADAGDVTLPQARTLCERMRNKIAMGVDPLKERAG--KKL 98

Query: 75  ISEYRKSAHWGSLAVNSRISFES-------YFDQIIRKSGDFDYRKITTKHIRSGVE--- 124
           +  +     W S    S+ +  S           +I   G     +ITT+ + +  +   
Sbjct: 99  VPTFEA-FAWNSYMPFSQANKRSWKTDETLIRTHLIPTFGKKHLDEITTEDVLNMQQAGL 157

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEY----VAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                P S  + L  +R +F  A  +++    V  NP   V   K   +  R    ++M 
Sbjct: 158 KAGAAPGSVNRRLILLRYMFNTAW-RDWKIAGVKENPTHGVRLLKENNKKERYVRADEMA 216

Query: 181 QFKSFW--SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVE 236
           +  +    S+ +  +    FL+ +G R ++   A    +       +    K+G    + 
Sbjct: 217 RLYAEICSSQNTMLKHIVAFLVLTGARRNEVLHATWHDINMTTGKWRIPDTKSGYARHLP 276

Query: 237 LPDGFMKLLA-MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSA 294
           L DG M +L  M  + +  F   N K           +     KAG+ +   H +R   A
Sbjct: 277 LNDGAMAVLHQMRGVSRSHFIFGNPKTGKAYVHIWYAWNTARKKAGLPDVRMHDLRHTFA 336

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
           ++  + G + +E+    G   +   + Y        L   N 
Sbjct: 337 SLLINNGRSIYEVQKLLGHTQIKTTQRYAHLTQETLLDASNI 378


>gi|330988880|gb|EGH86983.1| integrase family protein [Pseudomonas syringae pv. lachrymans str.
           M301315]
          Length = 325

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 50/316 (15%), Positives = 107/316 (33%), Gaps = 19/316 (6%)

Query: 18  HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISE 77
           +G      RK     +   +         + S + G   ++ ++++   + TTLK  +  
Sbjct: 9   NGTWRTKIRKKGYPSLSASF-DTKAEAQRWASEIEGDMSRKRFVDTREAESTTLKQALDR 67

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF- 136
           Y +     +    +R            K G     +I +  +    ++R     S     
Sbjct: 68  YER--EVSAQKKGARQEKTRIKTWAESKYGTKSMAEIRSSDLAEYRDARLAEGMSTNTVR 125

Query: 137 --LTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPWTKEDMQQ-FKSFWSEGSQ 191
             L  +  L+  A++   +    NP   +  PK   E  R  T +++    K+  +  ++
Sbjct: 126 LSLALISHLYTVAIKDWGIEGLSNPVTKLRMPKGSRERDRRPTAKELSAVLKAASAIHAE 185

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251
             +  E  + + +R  +      +H++     ++  K G+   V L      LL   P  
Sbjct: 186 MPVIIELAIETAMRRGELMTLRREHIRGKHVLLEDTKNGSRRLVPLSIRARALLDSLPA- 244

Query: 252 KETFFINNDKQKMNAT--QFSIWFKAKATKAG-VNKSAHGVRKFSATISADAGATAHELM 308
                   D    + +    S +F      A  ++   H +R    +   + G +  E  
Sbjct: 245 ------RIDGGVFSLSPHSVSQYFLKSCRAAKVIDLHFHDLRHEGTSRLFEKGFSIMEAA 298

Query: 309 ATYGWKTVDQAETYTK 324
           +  G KT+   + YT 
Sbjct: 299 SITGHKTMSMLKRYTH 314


>gi|222529994|ref|YP_002573876.1| integrase family protein [Caldicellulosiruptor bescii DSM 6725]
 gi|222456841|gb|ACM61103.1| integrase family protein [Caldicellulosiruptor bescii DSM 6725]
          Length = 392

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 51/323 (15%), Positives = 108/323 (33%), Gaps = 56/323 (17%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
           WL  +Y+K      ++ ++   +ES   + I      ++ + +  +H++  + + KH   
Sbjct: 77  WL-HQYKK----NQISESTFDDYESIIKNHINPVLEKYNLKDLRPEHLQ-MLYNEKHKAG 130

Query: 132 SAIQFLTSMRVLF----KWAVRQEYVAINPCLSVERPKRKTE-GIRPWTKEDMQQFKSFW 186
            + + +  + V+       A++   +  N   +   PK   E  ++  T E+ ++F    
Sbjct: 131 LSTKRIKDIHVILHSALNQAIKNGLIVRNVSEATTLPKNTREKEMKVLTIEEQKRFLQVL 190

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ-------------KTGT 231
            EG + + AF   L +G+R  +      Q +   N   +I+               KT T
Sbjct: 191 -EGERLKPAFVLALSTGMRLGEILALKWQDVDLENKRITIRNSVRRIKNRNEQSEIKTKT 249

Query: 232 IIT------------VELPD----------GFMKLLAMTP----IGKETFFINNDKQKMN 265
           ++             + LPD             +          +     F       + 
Sbjct: 250 VLVLKEPKTENSGRIIPLPDVAYQELVNFKLLQEEEKRQAGSSYVDSGFVFTTKVGTPIE 309

Query: 266 ATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
              F   F     KAG+N + H +R   AT   +A      +    G   +      Y+ 
Sbjct: 310 PRNFLRTFYRITEKAGLNINFHALRHTFATRLLEANTNPKVVQELLGHSDISTTLNIYSH 369

Query: 325 GA-DRIRLGIKNSRRISSVVDSD 346
              D  +  I     +   + ++
Sbjct: 370 VLFDTKQKAIGEINDLMKNLTNE 392


>gi|326693050|ref|ZP_08230055.1| tyrosine recombinase XerC [Leuconostoc argentinum KCTC 3773]
          Length = 302

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 41/277 (14%), Positives = 92/277 (33%), Gaps = 24/277 (8%)

Query: 72  KWLISEYRK-SAHWGSLAV-NSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES---R 126
             L  +Y +    +  L V       E++   +    G   YR + T  +R  +     R
Sbjct: 6   AQLYQDYLQAERQYSDLTVKAYLTDIEAFTTFLAENGGFTTYRAVQTLDVRVYLNELYER 65

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ-----Q 181
           +   ++  + ++S+R+ F++ +  ++V+ NP  +V   K ++     + + ++       
Sbjct: 66  QLARTTIARKISSLRMFFQFMLANQFVSDNPFENVALRKHQSHLPEFFYESELTTLFEVA 125

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVEL--- 237
           +        +     EFL  +G R ++     +  L       +   K      V     
Sbjct: 126 YAEDEPLWQRNAALLEFLYATGARVAEIANLTITQLDFAQRLVLIHGKGNKDRYVPFGHF 185

Query: 238 --------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AH 287
                          L       +  F+N+  + + A   +        K+ +  +   H
Sbjct: 186 AAQAMTQYLHELRPQLVAKQAPHDRVFVNHRGEPITAAGITYILNELMKKSALTGTIHPH 245

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            +R   AT   + GA    +    G   +   + YT 
Sbjct: 246 MLRHTFATHLLNHGADMRTVQELLGHVNLSTTQMYTH 282


>gi|225872872|ref|YP_002754329.1| phage integrase family protein [Acidobacterium capsulatum ATCC
           51196]
 gi|225794498|gb|ACO34588.1| phage integrase family protein [Acidobacterium capsulatum ATCC
           51196]
          Length = 414

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 57/320 (17%), Positives = 116/320 (36%), Gaps = 35/320 (10%)

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ----IIRKSGDFDYRK 113
            +   + +++P T+K  + EY   A   +LA ++    E+ F +      +  G    R+
Sbjct: 63  PKAAPAKKEEPVTIKQAVDEYLADARARNLAESTLSKLETIFRKQFLAWTKSEGYTLLRE 122

Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
           +  + ++S   + +    +  +    +   F + +R  ++  +P L+++R   +      
Sbjct: 123 LDLRAVQSFRATWRDGGLAKKKKQERLTGFFWFCIRAGWITQSPTLNLKRITVQQMPTDY 182

Query: 174 WTKED--------------MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-Q 218
           + +E+              +++       G + R   + L +SGLR  D+     + L  
Sbjct: 183 FPREEYNEIIDGTYRLDDGLERGYDVEKRGQRIRALVQLLRWSGLRIRDAVTLERERLQS 242

Query: 219 NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG----KETFFINNDKQKMNATQFSIW-F 273
           N+   +   KTG  + V LP    + L   P G       FF + +    +A       F
Sbjct: 243 NDDLLLYQAKTGVPVYVPLPHKVAEDLRNVPPGPKPNPRYFFWSGNGDPKSAVADWQRAF 302

Query: 274 KAKATKAGVNKS--------AHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYT- 323
           +     AG+ K          H  R   A     AG    ++    G K+V   E  Y  
Sbjct: 303 RRLFEVAGLEKPDGGRKRCFPHMFRDTFAVEMLLAGVPIDQVSILLGHKSVKITEKHYAP 362

Query: 324 -KGADRIRLGIKNSRRISSV 342
              A + +L     +    +
Sbjct: 363 FVKARQEQLAASVRQAWQEM 382


>gi|253990782|ref|YP_003042138.1| site-specific tyrosine recombinase XerC [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|253990786|ref|YP_003042142.1| site-specific tyrosine recombinase XerC [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|211639116|emb|CAR67728.1| Similar to integrase/recombinase [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|211639122|emb|CAR67734.1| Phage integrase [Photorhabdus asymbiotica subsp. asymbiotica ATCC
           43949]
 gi|253782232|emb|CAQ85396.1| similar to phage integrase/recombinase [Photorhabdus asymbiotica]
 gi|253782236|emb|CAQ85400.1| similar to phage integrase/recombinase [Photorhabdus asymbiotica]
          Length = 376

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 57/305 (18%), Positives = 104/305 (34%), Gaps = 32/305 (10%)

Query: 64  PRKKPTTLKWLISEY---RKSAHWGS--LAVNSRISFESYFDQIIR-KSGDFDYRKITTK 117
           P   P +L  L+  +   R+  +W    L V +  ++        R      D  +   +
Sbjct: 24  PAHDPKSLYALLLRFVVWRQERNWSETTLKVQTHHTYRFILWATERGLYYAADITRPILE 83

Query: 118 HIRSGVESRKHT------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
             +  +   + T        +    L  ++V FKW  +Q  +  NP   +E P+ +    
Sbjct: 84  RYQRYLYQYRKTNGEPLSTRTQRTQLEPLKVWFKWLTKQNLILANPAADLELPRLEKHLP 143

Query: 172 R-PWTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSI 224
           R   T ++ +Q  +        G + R   E L  +G+R  +  R  V  +  +    +I
Sbjct: 144 RYILTIDETEQILAQPDLTTLQGVRDRALMELLWSTGMRRGELTRLDVYSVDGSRKTVTI 203

Query: 225 KTQKTGTIITVELPDGFMKLLAMT-----------PIGKETFFINNDKQKMNATQFSIWF 273
           +  K      + L +  +  L              P  K  F   +    + A   S   
Sbjct: 204 RQGKGNKDRVLPLGERALSWLQRYQQQVRPQLIVNPDVKALFVAMDGLDGLQANGISNLV 263

Query: 274 KAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            A     G+ K    H  R   AT   + GA    + A  G  +V+  + YT+ + R   
Sbjct: 264 TAYINAVGIEKKGACHLFRHAMATQMLENGADLRWIQAMLGHASVESTQVYTQVSIRALQ 323

Query: 332 GIKNS 336
            +  S
Sbjct: 324 AVHAS 328


>gi|255534753|ref|YP_003095124.1| Probable integrase [Flavobacteriaceae bacterium 3519-10]
 gi|255340949|gb|ACU07062.1| Probable integrase [Flavobacteriaceae bacterium 3519-10]
          Length = 356

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 39/266 (14%), Positives = 96/266 (36%), Gaps = 16/266 (6%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHTPS 131
             +++       + ++  ++   F Q++         +++ + +R+      E+ K + S
Sbjct: 86  KRFQEHLVLKGYSQSTLRTYSIEFAQLLYVLKGHPVNELSPERLRAYFLYCHENLKLSES 145

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
                + +++  F+  + +  +  +    + RPK+K +  +  +K ++++      E  +
Sbjct: 146 EIHSRINAVKFYFEQVLHRHKMFFD----IPRPKKKQQLPKMLSKAEIKKII-LSVENPK 200

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTGTIITVELPDGFMKLLAM-- 247
             +  +     GLR S+     +  +        I+  K        LP+  +  L    
Sbjct: 201 HLMILKVCYGMGLRVSEVVALKLTDIDGAGKRVRIEQAKGKKDRITVLPESLLPELRAYY 260

Query: 248 -TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATA 304
                K   F      + +       FK    KAG+++    HG+R   AT   + G   
Sbjct: 261 LAYRPKTFLFEGQHGGQYSVRSAQAVFKKAVEKAGIHRKLGIHGLRHSFATHLLETGTDI 320

Query: 305 HELMATYGWKTVDQAETYTKGADRIR 330
             +    G  ++   + YT   D  +
Sbjct: 321 RFIQELLGHNSIKTTQIYTHVTDIAK 346


>gi|255011911|ref|ZP_05284037.1| putative integrase [Bacteroides fragilis 3_1_12]
 gi|313149745|ref|ZP_07811938.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313138512|gb|EFR55872.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 327

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 45/279 (16%), Positives = 97/279 (34%), Gaps = 15/279 (5%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----KHT 129
           LI  +  +      +  S   + S     IRK  + + R ITT  +R+ +         T
Sbjct: 52  LIDSFLSAKRVEGCSDKSMHYYRSTLSNAIRKI-EKNIRHITTDDLRNYLNDYQQISGAT 110

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
             +       +   F W   ++Y+  +P   + + K        ++ E ++Q +    EG
Sbjct: 111 KVTVDNIRRILSSFFAWLEDEDYIVKSPVRRIHKVKVGKTVKETYSDEALEQMRDHC-EG 169

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDG----FMKL 244
            +     + L  +G+R  +  +     +   N   I T K      V           + 
Sbjct: 170 IRDLALIDLLASTGMRVGELVKLNRNDIDFENRECIVTGKGDKQRRVYFDARTKIHLQRY 229

Query: 245 LAMTPIGKETFFIN--NDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG 301
           LA         F++      ++  +   I  +    +  + K   H  R+  AT++ D G
Sbjct: 230 LAGRIDDNSALFVSLLAPYDRLQISGVEIRLRRLGRELNIPKVHPHKFRRTLATMAIDKG 289

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
               ++    G +++D    Y    ++  + + + + I 
Sbjct: 290 MPIEQVQHLLGHQSLDTTLQYA-MVNQTNVKMSHRKFIG 327


>gi|283797399|ref|ZP_06346552.1| putative integrase [Clostridium sp. M62/1]
 gi|291074952|gb|EFE12316.1| putative integrase [Clostridium sp. M62/1]
          Length = 408

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 47/306 (15%), Positives = 90/306 (29%), Gaps = 53/306 (17%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGV---ES 125
           TL      + +   +  +  N+R+ ++  F   I    G    + IT  HIR+ +   + 
Sbjct: 67  TLSVWFDNWLEIYKYNVIRDNTRVYYKQVFKKHIEPLLGHKRLKDITQLHIRALLKELDK 126

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +     +  +    +  ++  A+   Y   NP   +  PK      R ++ E+   F   
Sbjct: 127 QGLQFQTQNKVRVMLLDMYNKAILDNYAVRNPAKGIRLPKHNKRNKRVFSVEEQIDFFDC 186

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---------------------NNIFSI 224
              G+     F   + +GLR  + C      +                         F I
Sbjct: 187 CK-GTFYDNLFTVAVNTGLRQGELCALTWDDIDLEKKEINVEKTLLYQKLEGDTGKTFHI 245

Query: 225 KTQKTGTI-ITVELPDGFMKLLAMTPIGKETFFINNDKQK-------MNATQFSIWFKAK 276
              KT T    V +       L    I +         +        +  T+++     +
Sbjct: 246 NPPKTKTSNRKVPINKQCEIALKKQLIQRNNIISRQSAKPEKGFENLLFTTKYATPICDQ 305

Query: 277 ATKAGVNK------------------SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
                + K                  + H  R   AT   +AG +   +    G  T+  
Sbjct: 306 ILIDAIKKIVNEINSVRSEIEQFEMFTPHCFRHTFATRCFEAGISPKVIQTYLGHSTLQM 365

Query: 319 A-ETYT 323
             + YT
Sbjct: 366 TMDLYT 371


>gi|254450019|ref|ZP_05063456.1| phage integrase [Octadecabacter antarcticus 238]
 gi|254450690|ref|ZP_05064127.1| phage integrase [Octadecabacter antarcticus 238]
 gi|254452057|ref|ZP_05065494.1| phage integrase [Octadecabacter antarcticus 238]
 gi|254452879|ref|ZP_05066316.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198264425|gb|EDY88695.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198265096|gb|EDY89366.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198266463|gb|EDY90733.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198267285|gb|EDY91555.1| phage integrase [Octadecabacter antarcticus 238]
          Length = 317

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 44/258 (17%), Positives = 84/258 (32%), Gaps = 19/258 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLF 144
            +L   S+ S      +     G       T   ++   +    +  S      +M  + 
Sbjct: 39  RNLGPASQSSHLRACKRFAAWLGRSPETA-TPDDVKYFQQHLIESGVSICTRNQTMTGV- 96

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGL 204
           K+ +R      +    +   K   +     +K+++++  +      + R+        G+
Sbjct: 97  KFLLRVTLRRHDLVAEIFHLKEPVKVPLVLSKKEIKRILAMAPS-LKARVMLSLAYGCGM 155

Query: 205 RCSDSCRAGVQHLQNN--IFSIKTQKTGTIITVELPDGFMKLLAMT------------PI 250
           R  +  R  V  + ++  I  I   K      V LP   + LL               P 
Sbjct: 156 RAGEVVRLKVGDIDSDQEIIRIVQSKGRKDRIVMLPVDILSLLRDWWKERPTGQDKDVPA 215

Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELM 308
            +   F     + ++A Q S  FK  A +AG+ K  + H +R   AT   + G     + 
Sbjct: 216 PERVLFPGYRGKHLSARQISRLFKETAREAGITKPVTLHTLRHSFATHLLERGVDIRVIQ 275

Query: 309 ATYGWKTVDQAETYTKGA 326
           A  G   +     Y   A
Sbjct: 276 ALLGHSKLTTTARYASVA 293


>gi|315606523|ref|ZP_07881538.1| tyrosine recombinase XerC [Prevotella buccae ATCC 33574]
 gi|315251929|gb|EFU31903.1| tyrosine recombinase XerC [Prevotella buccae ATCC 33574]
          Length = 293

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 92/278 (33%), Gaps = 30/278 (10%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVESRKH 128
           +I ++     +  + +  +  S+               G   +  + +  IR  +ES   
Sbjct: 2   MIEKFLNYLKFELNRSERTVKSYGEDLRAFEEFFKNLDGHPSWESVDSDIIRDWMESMMD 61

Query: 129 TPSSA---IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK-- 183
             ++A    + L+++R  +++A+ +E V  +P   V  PK+K    +   + ++      
Sbjct: 62  KGNNATSINRRLSALRSFYRFALARELVVKDPAHDVVGPKKKKPLPQFLKENEINALLDS 121

Query: 184 SFWS---EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELP 238
             W    +  + R        +G+R S+        +   N+   + T K      +   
Sbjct: 122 DMWEDTYDDMRARTIVMTFYETGMRLSELTGLRDADVDFVNHELKV-TGKRNKQRIIPFG 180

Query: 239 DGFMKLLAMTPIGKET--------FFINNDKQKMNATQFSIWFKAK----ATKAGVNKSA 286
               + LA     ++         FF+ +    M   Q     K       T     ++ 
Sbjct: 181 AELAQTLADYKSLRDATERGNCGKFFLTDKGLAMQNAQVREIVKKHLSRVCTLK--KRTP 238

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           H +R   AT   +  A    L    G   +   E YT 
Sbjct: 239 HVLRHTFATAMLNHEAGLESLKRLLGHARLSTTEIYTH 276


>gi|295093615|emb|CBK82706.1| Site-specific recombinase XerD [Coprococcus sp. ART55/1]
          Length = 306

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 43/296 (14%), Positives = 91/296 (30%), Gaps = 31/296 (10%)

Query: 74  LISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTP 130
           LI  Y +       L   +  +++    Q        D   ++T  +   +     K+ P
Sbjct: 7   LIKNYLEYCGKQKCLDEKTLKAYKIDLKQFSDYLCSSDITNVSTSILEDYIGELHNKYKP 66

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQQFKSFWSE- 188
            +  + + S +  F +   +E +  NP   ++ + +      +      ++   S   E 
Sbjct: 67  KTVKRKIASAKAFFHYLEYKEILDRNPFNKLQIKFREPVILPKTIPLRTVETILSTIYEQ 126

Query: 189 ------------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSI-------KTQ 227
                         +     E L  +G+R S+ C   V  +   +    I       +  
Sbjct: 127 LNCAKTIYQRRNSLRDAAVIELLFATGMRISELCALKVNDINLYDGSILIYGKGDKERRL 186

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--S 285
           + G    + + + +        +    FF N   + +               A ++   +
Sbjct: 187 QIGNPSVISILNKYEVDFHSEIMNCNHFFANQSGRSLTDQTVRRMINKYTALAAIDLHIT 246

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA---DRIRLGIKNSRR 338
            H  R   AT   +A      +    G  +++  E YT  A    R  L  K+ R 
Sbjct: 247 PHMFRHTFATSLLEADVDIRYIQEMLGHSSINITEIYTHVALAKQRSILATKHPRN 302


>gi|251771081|gb|EES51665.1| phage integrase family protein [Leptospirillum ferrodiazotrophum]
          Length = 324

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 43/279 (15%), Positives = 89/279 (31%), Gaps = 20/279 (7%)

Query: 65  RKKPTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRS 121
           R+ P  ++ L+  + +        A N+  ++ +      R              + +  
Sbjct: 3   RRPPDEVERLLDRFEEELLLAKKRAPNTVTAYLTDLRTFSRHLTREGVSLLDFDGEALTP 62

Query: 122 GVESRKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
            +E R   +  S  +FL+S+R   ++      V  +P  +   P+      +  ++++++
Sbjct: 63  YLERRGDLSVRSRARFLSSVRAWTRFLELSG-VRKDPRETPPAPRLPRSLPKILSQDEVE 121

Query: 181 QFKS----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
           +          EG + R    F   SGLR S+        +     +++    G    + 
Sbjct: 122 RLIEAPDPHRPEGVRDRAILSFFYASGLRVSELATITADRVDLATGALRVMGKGAKERIA 181

Query: 237 LPDGFMKLL---------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKS 285
             D   + L                   F+  D   +         K     AG+    S
Sbjct: 182 FLDERTRHLLSDYLTTVRPAFAREHPELFLARDGAPLTRQALWTLIKKHGRAAGITSPLS 241

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            H +R   AT   + G     +    G + +   E YT 
Sbjct: 242 PHVLRHSFATHLLEKGLDIRSIQLLLGHEDIRTTEIYTH 280


>gi|237738086|ref|ZP_04568567.1| conserved hypothetical protein [Fusobacterium mortiferum ATCC 9817]
 gi|229419966|gb|EEO35013.1| conserved hypothetical protein [Fusobacterium mortiferum ATCC 9817]
          Length = 353

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 58/306 (18%), Positives = 104/306 (33%), Gaps = 45/306 (14%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESR-- 126
           T + L   Y +      L  ++ ++ +    D+I+          IT   +R    +   
Sbjct: 55  TFQSLYELYMEDMT-HRLRKHTMMTKKKIIEDKILPFFSKLKLDSITPVKVRQWQNTLIS 113

Query: 127 ----KHTPSSAIQFLTS---MRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKED 178
               K+TP S     T    +  +F +AV+   +  NPC       K+K E +  WT E+
Sbjct: 114 GVSIKNTPYSPTYLKTINNQLTAIFNYAVKYHNMKENPCHKAGSMGKKKAEEMIIWTPEE 173

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK---------- 228
            ++F  F        + F  L ++G+R  +     ++ +     +I   K          
Sbjct: 174 FEKFSQFIKNKMPNYVGFNILFWTGIRIGELLALTLKDIDLRNKTISISKSYQRLEGEDV 233

Query: 229 ------TGTIITVELPDGFMKLLAM------TPIGKETFFINNDKQKMNATQFSIWFKAK 276
                 T +   V +PD  ++LL         P      F            F    +  
Sbjct: 234 ITAPKTTKSKRVVTIPDSVVELLERYLKMLYKPSKTMRLF------PYTKHLFENDLRIY 287

Query: 277 ATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK---GADRIRL 331
           + KAG+ K   H +R   A+   + G     +    G + ++     Y      AD   L
Sbjct: 288 SEKAGLKKIRIHDLRHSHASYLFNNGVDILTIAKRLGHENIETTLGIYAHTYTSADEKLL 347

Query: 332 GIKNSR 337
            I N +
Sbjct: 348 KILNKK 353


>gi|225028233|ref|ZP_03717425.1| hypothetical protein EUBHAL_02505 [Eubacterium hallii DSM 3353]
 gi|224954412|gb|EEG35621.1| hypothetical protein EUBHAL_02505 [Eubacterium hallii DSM 3353]
          Length = 303

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 39/277 (14%), Positives = 91/277 (32%), Gaps = 29/277 (10%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF 136
           EYRK   W     N+  ++     Q +      +  K   +   + +  +K+   +  + 
Sbjct: 15  EYRKELDW-----NTLKAYRIDLRQFVEFIEGEEPSKEKIERYITYLH-KKYKQKTVKRK 68

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSV-ERPKRKTEGIRPWTKEDMQQF-----------KS 184
           + S++V + +   +E +  NP   V  + K +    R   +E++++            + 
Sbjct: 69  IASLKVFYAYLEEEEIIEENPMRRVHTKFKEERVLPRIIPREEIEKLLNCMYKELRESEK 128

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------TIITV 235
                 +     E    +G R  +     ++++      I+    G             +
Sbjct: 129 NQRFILRDVAVVEVFFATGARVYEIANIRIENINLESGVIRFMGKGGKERIVQIGEESVI 188

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFS 293
           EL + +             FFIN  K +       +  K    +A + +  + H  R   
Sbjct: 189 ELLNRYYTENKEEIHACGYFFINKRKSRFTEQSIRLMLKKYTKQAKIERNITPHMFRHSF 248

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
           AT   + G     +    G  ++   + Y   + + +
Sbjct: 249 ATYLIEEGVDISCVQQILGHSSIKTTQIYIHVSSQKQ 285


>gi|171320566|ref|ZP_02909590.1| tyrosine recombinase XerC [Burkholderia ambifaria MEX-5]
 gi|171094193|gb|EDT39276.1| tyrosine recombinase XerC [Burkholderia ambifaria MEX-5]
          Length = 306

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 46/280 (16%), Positives = 90/280 (32%), Gaps = 32/280 (11%)

Query: 75  ISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTP 130
           I+ Y  +  H   L+ ++  ++    D++ + +       +T   +R  V        + 
Sbjct: 6   IAAYLSNLKHVRQLSEHTLRAYTHELDELKKLAAGRPLDALTAVDMRGAVARAHAGGLSA 65

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFW 186
            S    L++ R  ++W  ++  +  NP  +V  PKR     +  + +D    M    +  
Sbjct: 66  RSIAHRLSAWRAFYRWLAQRIEMPANPVAAVRAPKRPKTLPKALSVDDASALMDAPLAGT 125

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRA-------------GVQHLQNNIFSIKTQKTGTII 233
           +EG +     E    SGLR ++                 G   L     +++  K     
Sbjct: 126 TEGIRDHAILELFYSSGLRLAELVGLDVMYTQADGYRSAGWLDLAEAEVTVR-GKGNKER 184

Query: 234 TVELPDGFMKLLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284
            V +    +  L                  F++    +M         K  A  AG+   
Sbjct: 185 KVPVGRKAIDALNAWLAVRGEFVKHDPHPLFVSVRGNRMAPGVVRDRVKRAALAAGIPAN 244

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
              H +R   AT    +      +    G  +V   + YT
Sbjct: 245 VHPHVLRHSFATHVLQSSGDLRAVQELLGHASVAATQVYT 284


>gi|121606322|ref|YP_983651.1| phage integrase family protein [Polaromonas naphthalenivorans CJ2]
 gi|120595291|gb|ABM38730.1| phage integrase family protein [Polaromonas naphthalenivorans CJ2]
          Length = 345

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 52/306 (16%), Positives = 99/306 (32%), Gaps = 40/306 (13%)

Query: 58  REYINSPRKKPTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQI---IRKSGDF--DY 111
           +    +    P     L++ Y         LA  +   + +  +++    RK+G    D 
Sbjct: 2   KPVPPAQDSAPEEADPLVTRYLAYVRVEKRLASRTVELYMADLEKLQANARKAGVALTDV 61

Query: 112 RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
           +    +   + + SR  +       L+  R  + W  R+  V  NP   V  PK      
Sbjct: 62  KHTHLRRWVAQMHSRGRSGRGIALILSGWRGFYTWLGREGLVPGNPVQDVRSPKIAKPLP 121

Query: 172 RPWTKEDMQQFKSFWSEGS--------QPRLAFEFLLYSGLRCSDSCRA---------GV 214
           +  + ++  Q  SF  E +        + +   E L   GLR S+             G 
Sbjct: 122 KALSVDEAVQLASFELEATDGDPFLEARDQCITELLYGCGLRISELVGLDAQASGKARGW 181

Query: 215 QHLQNNIFSIKTQKTGTIITVEL----PDGFMKLLAMTPI----------GKETFFINND 260
             +Q     +   K     +V +         K LA   +          G E  FIN  
Sbjct: 182 IDMQGGDAHV-LGKGEKRRSVPVGGAALKSLHKWLAARSLWARPGADGVQGGEALFINQR 240

Query: 261 KQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
             ++      +  K ++ +AG+      H +R   A+    +      +    G  ++  
Sbjct: 241 GSRLTPQHIRVRLKQRSQQAGLATPVHPHMLRHSFASHVLQSSGDLRAVQELLGHASITT 300

Query: 319 AETYTK 324
            + YT+
Sbjct: 301 TQAYTR 306


>gi|325269556|ref|ZP_08136172.1| site-specific tyrosine recombinase XerC [Prevotella multiformis DSM
           16608]
 gi|324988175|gb|EGC20142.1| site-specific tyrosine recombinase XerC [Prevotella multiformis DSM
           16608]
          Length = 297

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 41/263 (15%), Positives = 97/263 (36%), Gaps = 23/263 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESRKHTPSSA---IQFL 137
            + +  +  S+    ++  R   D +    +  + +  +R+ +E      ++A    + L
Sbjct: 18  RNYSPMTVTSYRKDLEEFERFFQDLEEQLSWETVDSDVVRNWMEDMMDRGNAASSVNRRL 77

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS--FWSEGSQPRLA 195
           +S+R  +++A+R+  V  +P   ++ PKR+    +   + +M++      W++  +  LA
Sbjct: 78  SSLRSFYRFALRRSLVRRDPVHGLQGPKRQKPLPQFLKESEMERLLEPGMWTDSYKDVLA 137

Query: 196 FEFLL---YSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLL------ 245
              ++    +G+R S+      + +      +K T K      +       + L      
Sbjct: 138 RTLIMTFYETGVRVSELTGLDDKDVDGLTCELKVTGKRDKQRIIPFGRELAETLAAYRQV 197

Query: 246 --AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAG 301
             A         F      +M   Q     K   ++      ++ H +R   AT   +  
Sbjct: 198 RGAAVKGDSAALFRTEKGVRMTDGQVRALVKKHLSRVSTLKKRTPHVLRHTFATAMLNHE 257

Query: 302 ATAHELMATYGWKTVDQAETYTK 324
           A    +    G +++   E YT 
Sbjct: 258 AGLESVKKLLGHESLSTTEIYTH 280


>gi|296121441|ref|YP_003629219.1| tyrosine recombinase XerD [Planctomyces limnophilus DSM 3776]
 gi|296013781|gb|ADG67020.1| tyrosine recombinase XerD [Planctomyces limnophilus DSM 3776]
          Length = 315

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 50/284 (17%), Positives = 96/284 (33%), Gaps = 25/284 (8%)

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKH-- 118
           P   P+T       Y +      LA N+ IS+E    +      +SG      IT +   
Sbjct: 17  PTALPSTHVEGFVAYLQ--GECGLARNTVISYERDIKRFSDWFHESGVVRVTDITLQDLS 74

Query: 119 -IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
                +   K   S+  + L S+++ F++ + +  +  +    +  PK      +  +++
Sbjct: 75  GYLRYLHELKLATSTIARHLVSLKMFFRYLMLEGILKESVADLLNSPKLWEHLPKVLSED 134

Query: 178 DMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTI 232
            + +             + R     L  +G R S+ C   ++ LQ +    +   K    
Sbjct: 135 AVNRLLDAPMHQDLNPYRDRALLAVLYATGCRASEVCSLKMRDLQLDEGFCRCVGKGNKE 194

Query: 233 ITVELPDGFMKLL-----AMTPIGKET-----FFINNDKQKMNATQFSIWFKAKATKAGV 282
             V L    +  L        P    T      F +   + ++  Q     K  A++ G+
Sbjct: 195 RLVSLNPVAVSALKTYLARERPARAGTNLDSPVFTSRSGRSIDRIQVWKLVKRYASRIGL 254

Query: 283 --NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
               + H +R   AT     GA    L    G  ++   + YT 
Sbjct: 255 SDAVTPHTLRHSFATHMLANGAEIRALQELLGHASIRTTQIYTH 298


>gi|110639767|ref|YP_679977.1| integrase [Cytophaga hutchinsonii ATCC 33406]
 gi|110282448|gb|ABG60634.1| integrase [Cytophaga hutchinsonii ATCC 33406]
          Length = 293

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 42/276 (15%), Positives = 101/276 (36%), Gaps = 25/276 (9%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYF----DQIIRKSGDFDYRKITTKHIRSGVESRKH 128
           +++E+     +    + ++ +S+++      D ++               +RS + +   
Sbjct: 1   MVNEFLTYLSFEKRYSKHTTVSYKNDLSNLSDYLLITYELSTPEHANYPMLRSWIVTLVD 60

Query: 129 T---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
               P S  + +  +R  + +  ++E++  +P L +   K K        +E++      
Sbjct: 61  QELEPKSINRKIACLRSYYHFLQKKEFITKDPTLKIRALKVKKSLPVFVAEENITDLLDK 120

Query: 186 WS-----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPD 239
           +      EG + +L  E L  +G+R S+        +     +IK   K      + + D
Sbjct: 121 FEFADSFEGLRDKLVLELLYGTGIRLSELIGLKNADVNMFQKTIKVLGKGNKERIIPIHD 180

Query: 240 GFMKLLAMTPIGKET---------FFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHG 288
            F+ L     I K++         F + N+ +++         +    +      +S H 
Sbjct: 181 TFITLAKAYTIKKKSESFSNNTEFFVVTNNGEQVYPMFIYRLVRMYLDQVTTVDKRSPHV 240

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +R   AT   + GA  + +    G  ++   + YT 
Sbjct: 241 LRHTFATHLLNKGADLNAIKDLLGHTSLAATQVYTH 276


>gi|330952167|gb|EGH52427.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae Cit
           7]
          Length = 299

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 37/259 (14%), Positives = 93/259 (35%), Gaps = 19/259 (7%)

Query: 85  GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIR---SGVESRKHTPSSAIQFLT 138
             ++ ++  ++     ++    +K+    +  +  +H+R   +    +  +  S  + L+
Sbjct: 16  RQVSPHTLEAYRRDLGKVLAYCQKARLSSWSDLDIQHLRSFTARQHQQGQSSRSLARMLS 75

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRL 194
           ++R  +K+  R+     +P   +  PK +    +    +   Q      E      + + 
Sbjct: 76  AVRGFYKYLNREGICQHDPANGLSPPKGERRLPKTLDTDRTAQLLDGGVEDDFLAHRDQA 135

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV--------ELPDGFMKLLA 246
             E L  SGLR S+     +  L      ++    G+   V        +  + ++ L A
Sbjct: 136 ILELLYSSGLRLSELTGLNLDQLDLRDGLVQVLGKGSKTRVLPVGSKARQALEVWLPLRA 195

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAK-ATKAGVNKSAHGVRKFSATISADAGATAH 305
           +T    +  F++   +++      +  KA    + G N   H +R   A+   ++     
Sbjct: 196 LTHPQDDAVFVSLQGRRLGPRAIQVRLKAAGERELGQNLHPHMLRHSFASHLLESSQDLR 255

Query: 306 ELMATYGWKTVDQAETYTK 324
            +    G   +   + YT 
Sbjct: 256 AVQELLGHADIKTTQIYTH 274


>gi|254449766|ref|ZP_05063203.1| phage integrase [Octadecabacter antarcticus 238]
 gi|254450115|ref|ZP_05063552.1| phage integrase [Octadecabacter antarcticus 238]
 gi|254450532|ref|ZP_05063969.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198264172|gb|EDY88442.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198264521|gb|EDY88791.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198264938|gb|EDY89208.1| phage integrase [Octadecabacter antarcticus 238]
          Length = 320

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 44/258 (17%), Positives = 84/258 (32%), Gaps = 19/258 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLF 144
            +L   S+ S      +     G       T   ++   +    +  S      +M  + 
Sbjct: 39  RNLGPASQSSHLRACKRFAAWLGRSPETA-TPDDVKYFQQHLIESGVSICTRNQTMTGV- 96

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGL 204
           K+ +R      +    +   K   +     +K+++++  +      + R+        G+
Sbjct: 97  KFLLRVTLRRHDLVAEIFHLKEPVKVPLVLSKKEIKRILAMAPS-LKARVMLSLAYGCGM 155

Query: 205 RCSDSCRAGVQHLQNN--IFSIKTQKTGTIITVELPDGFMKLLAMT------------PI 250
           R  +  R  V  + ++  I  I   K      V LP   + LL               P 
Sbjct: 156 RAGEVVRLKVGDIDSDQEIIRIVQSKGRKDRIVMLPVDILSLLRDWWKERPTGQDKDVPA 215

Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELM 308
            +   F     + ++A Q S  FK  A +AG+ K  + H +R   AT   + G     + 
Sbjct: 216 PERVLFPGYRGKHLSARQISRLFKETAREAGITKPVTLHTLRHSFATHLLERGVDIRVIQ 275

Query: 309 ATYGWKTVDQAETYTKGA 326
           A  G   +     Y   A
Sbjct: 276 ALLGHSKLTTTARYASVA 293


>gi|163815939|ref|ZP_02207309.1| hypothetical protein COPEUT_02119 [Coprococcus eutactus ATCC 27759]
 gi|158448749|gb|EDP25744.1| hypothetical protein COPEUT_02119 [Coprococcus eutactus ATCC 27759]
          Length = 306

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 43/296 (14%), Positives = 91/296 (30%), Gaps = 31/296 (10%)

Query: 74  LISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTP 130
           LI  Y +       L   +  +++    Q        D   ++T  +   +     K+ P
Sbjct: 7   LIKNYLEYCGKQKCLDEKTLKAYKIDLKQFSDYLCSSDITNVSTSILEDYIGELHNKYKP 66

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQQFKSFWSE- 188
            +  + + S +  F +   +E +  NP   ++ + +      +      ++   S   E 
Sbjct: 67  KTVKRKIASAKAFFHYLEYKEILDRNPFNKLQIKFREPVILPKTIPLHTVETILSTIYEQ 126

Query: 189 ------------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSI-------KTQ 227
                         +     E L  +G+R S+ C   V  +   +    I       +  
Sbjct: 127 LNCAKTIYQRRNSLRDAAVIELLFATGMRISELCALKVNDINLYDGSILIYGKGDKERRL 186

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--S 285
           + G    + + + +        +    FF N   + +               A ++   +
Sbjct: 187 QIGNPSVISILNKYEVDFHSEIMNCNHFFANQSGRSLTDQTVRRMINKYTALAAIDLHIT 246

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA---DRIRLGIKNSRR 338
            H  R   AT   +A      +    G  +++  E YT  A    R  L  K+ R 
Sbjct: 247 PHMFRHTFATSLLEADVDIRYIQEMLGHSSINITEIYTHVALAKQRSILATKHPRN 302


>gi|300780929|ref|ZP_07090783.1| tyrosine recombinase XerD [Corynebacterium genitalium ATCC 33030]
 gi|300532636|gb|EFK53697.1| tyrosine recombinase XerD [Corynebacterium genitalium ATCC 33030]
          Length = 294

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 37/267 (13%), Positives = 85/267 (31%), Gaps = 22/267 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFD-YRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL 143
              +  +   + S    +   +  FD +  I  +   +    +    S+  +   + R  
Sbjct: 19  KGRSEATVKGYRSDLRTLAEVAPTFDDFTLIALRGWLADAMRQGLARSTMARRTAAARSF 78

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWT--------KEDMQQFKSFWSEGSQPRLA 195
             WA  + Y+  +    +  P+         T        + ++    S   E ++ R  
Sbjct: 79  STWAYERGYLDSDVAARLVTPQINRHLPDVVTSSRAGELVEAEIN-PDSDGPEAARDRAM 137

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAMTPI---- 250
            E +  +G+R ++     V  +       + T K      V   +     +         
Sbjct: 138 LELMYATGMRVAELTGLDVDDVDTKQGLARVTGKGNKQRVVPFGERATAAIEEWKTRRTE 197

Query: 251 -----GKETFFINNDKQKMNATQFSIWFKAKATKAG-VNKSAHGVRKFSATISADAGATA 304
                     F+ +   +++  Q     +  A + G  + S H +R  +AT   + GA  
Sbjct: 198 LVSDKSGHALFLGSRGGRIDQRQVRRVVERAAQRTGDTDLSPHALRHSAATHMLEGGADL 257

Query: 305 HELMATYGWKTVDQAETYTK-GADRIR 330
             +    G  ++   + YT   A R++
Sbjct: 258 RVVQELLGHSSLQTTQIYTHVSAQRLK 284


>gi|145635531|ref|ZP_01791230.1| tyrosine recombinase [Haemophilus influenzae PittAA]
 gi|145267194|gb|EDK07199.1| tyrosine recombinase [Haemophilus influenzae PittAA]
          Length = 295

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 40/260 (15%), Positives = 89/260 (34%), Gaps = 21/260 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRKHTPSSAIQFLT 138
             ++ ++  +++   D II+     D    T       + I +  + +     S    L+
Sbjct: 16  RQMSPHTITNYQHQLDAIIKILAQQDIHAWTQVTPSVVRFILAESKKQGLKEKSLALRLS 75

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS---FWSEGSQPRLA 195
           ++R    + V+Q  + +NP   +  PK+     +    E +QQ  +         + R  
Sbjct: 76  ALRRFLSFLVQQGELKVNPATGISAPKQGRHLPKNMDGEQVQQLLANDSKEPIDIRDRAI 135

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLLA 246
            E +  SGLR S+     +  +   +  ++    G    V          + +       
Sbjct: 136 LELMYSSGLRLSELQGLDLNSINTRVREVRVIGKGNKERVVPFGRYASHAIQEWLKVRAL 195

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATA 304
             P   E  F++    +++        +    + G+N   + H +R   AT   +A +  
Sbjct: 196 FNP-KDEALFVSQLGNRISHRAIQKRLETWGIRQGLNSHLNPHKLRHSFATHMLEASSDL 254

Query: 305 HELMATYGWKTVDQAETYTK 324
             +    G   +   + YT 
Sbjct: 255 RAVQELLGHSNLSTTQIYTH 274


>gi|148267742|ref|YP_001246685.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus JH9]
 gi|150393800|ref|YP_001316475.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus JH1]
 gi|189030083|sp|A6U170|XERC_STAA2 RecName: Full=Tyrosine recombinase xerC
 gi|189030084|sp|A5ISD6|XERC_STAA9 RecName: Full=Tyrosine recombinase xerC
 gi|147740811|gb|ABQ49109.1| tyrosine recombinase XerC subunit [Staphylococcus aureus subsp.
           aureus JH9]
 gi|149946252|gb|ABR52188.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus JH1]
          Length = 298

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 37/266 (13%), Positives = 94/266 (35%), Gaps = 22/266 (8%)

Query: 85  GSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVE---SRKHTPSSAIQFLTS 139
            + + ++  S++    Q  +  +      +    +  R+ +    S     +S  + +++
Sbjct: 16  RNFSEHTLKSYQDDLIQFNQFLEQEHLQLKTFEYRDARNYLSYLYSNHLKRTSVSRKIST 75

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLA 195
           +R  +++ +  +   INP + +  PK++    + + +E+M+       E +    + R+ 
Sbjct: 76  LRTFYEYWMTLDENIINPFVQLVHPKKEKYLPQFFYEEEMEALFKTVEEDTSKNLRDRVI 135

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVE--------LPDGFMKLL 245
            E L  +G+R S+      Q +    N  ++   K      V         + +      
Sbjct: 136 LELLYATGIRVSELVNIKKQDIDFYANGVTV-LGKGSKERFVPFGAYCRQSIENYLEHFK 194

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATK-AGV-NKSAHGVRKFSATISADAGAT 303
            +     +   +N   + +              + AGV     H +R   AT   + GA 
Sbjct: 195 PIQSCNHDFLILNMKGEAITERGVRYVLNDIVKRTAGVSEIHPHKLRHTFATHLLNQGAD 254

Query: 304 AHELMATYGWKTVDQAETYTKGADRI 329
              + +  G   +     YT  +++ 
Sbjct: 255 LRTVQSLLGHVNLSTTGKYTHVSNQQ 280


>gi|330812552|ref|YP_004357014.1| Site-specific tyrosine recombinase XerC/Sss [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gi|34222931|sp|Q8VS06|XERC_PSEFL RecName: Full=Tyrosine recombinase xerC
 gi|1929097|emb|CAA72946.1| Sss/XerC protein [Pseudomonas fluorescens]
 gi|27652537|gb|AAO17715.1| site-specific recombinase [Pseudomonas fluorescens]
 gi|327380660|gb|AEA72010.1| Site-specific tyrosine recombinase XerC/Sss [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 299

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 38/273 (13%), Positives = 95/273 (34%), Gaps = 22/273 (8%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQII-----RKSGDFDYRKITT-KHIRSGVE 124
           L       R       ++ ++  ++    ++++     +  G +    I   + + + + 
Sbjct: 5   LDAYCEHLRSE---RQVSPHTLSAYRRDLEKVLGWCQKQNIGSWAALDIQRLRSLIARLH 61

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW-TKEDMQQFK 183
            +  +  S  + L+++R L+ +  R+     +P   +  PK +    +   T   +Q  +
Sbjct: 62  QQGQSSRSLARLLSAVRGLYHYLNREGLCDHDPATGLAPPKGERRLPKTLDTDRALQLLE 121

Query: 184 SFWSEGSQPR---LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV----- 235
               +    R      E    SGLR S+     +  L      ++    G+   +     
Sbjct: 122 GAVEDDFLARRDQAILELFYSSGLRLSELTGLNLDQLDLADGMVQVLGKGSKTRLLPVGR 181

Query: 236 ---ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK-ATKAGVNKSAHGVRK 291
              E  + ++ L A+T    +  F++   +++      +  KA    + G N   H +R 
Sbjct: 182 KAREALEQWLPLRALTNPADDAVFVSQQGRRLGPRAIQLRVKAAGERELGQNLHPHMLRH 241

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK 324
             A+   ++      +    G   +   + YT 
Sbjct: 242 SFASHLLESSQDLRAVQELLGHSDIKTTQIYTH 274


>gi|15924242|ref|NP_371776.1| site-specific recombinase XerC-like protein [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|15926835|ref|NP_374368.1| hypothetical protein SA1095 [Staphylococcus aureus subsp. aureus
           N315]
 gi|156979573|ref|YP_001441832.1| site-specific recombinase XerC homologue [Staphylococcus aureus
           subsp. aureus Mu3]
 gi|253315609|ref|ZP_04838822.1| hypothetical protein SauraC_05582 [Staphylococcus aureus subsp.
           aureus str. CF-Marseille]
 gi|255006039|ref|ZP_05144640.2| hypothetical protein SauraM_06200 [Staphylococcus aureus subsp.
           aureus Mu50-omega]
 gi|257795692|ref|ZP_05644671.1| tyrosine recombinase XerC [Staphylococcus aureus A9781]
 gi|258415916|ref|ZP_05682186.1| conserved hypothetical protein [Staphylococcus aureus A9763]
 gi|258421678|ref|ZP_05684602.1| tyrosine recombinase XerC [Staphylococcus aureus A9719]
 gi|258434834|ref|ZP_05688908.1| xerC protein [Staphylococcus aureus A9299]
 gi|258444590|ref|ZP_05692919.1| xerC protein [Staphylococcus aureus A8115]
 gi|258447577|ref|ZP_05695721.1| tyrosine recombinase xerC [Staphylococcus aureus A6300]
 gi|258449419|ref|ZP_05697522.1| tyrosine recombinase xerC [Staphylococcus aureus A6224]
 gi|258454798|ref|ZP_05702762.1| tyrosine recombinase XerC [Staphylococcus aureus A5937]
 gi|269202868|ref|YP_003282137.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           ED98]
 gi|282892740|ref|ZP_06300975.1| tyrosine recombinase XerC [Staphylococcus aureus A8117]
 gi|282927594|ref|ZP_06335210.1| tyrosine recombinase XerC [Staphylococcus aureus A10102]
 gi|295406188|ref|ZP_06815995.1| tyrosine recombinase XerC [Staphylococcus aureus A8819]
 gi|296274810|ref|ZP_06857317.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus MR1]
 gi|297244416|ref|ZP_06928299.1| tyrosine recombinase XerC [Staphylococcus aureus A8796]
 gi|54039882|sp|P67631|XERC_STAAN RecName: Full=Tyrosine recombinase xerC
 gi|54042779|sp|P67630|XERC_STAAM RecName: Full=Tyrosine recombinase xerC
 gi|166918904|sp|A7X1M7|XERC_STAA1 RecName: Full=Tyrosine recombinase xerC
 gi|13701052|dbj|BAB42347.1| xerC [Staphylococcus aureus subsp. aureus N315]
 gi|14247022|dbj|BAB57414.1| site-specific recombinase XerC homologue [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|156721708|dbj|BAF78125.1| site-specific recombinase XerC homologue [Staphylococcus aureus
           subsp. aureus Mu3]
 gi|257789664|gb|EEV28004.1| tyrosine recombinase XerC [Staphylococcus aureus A9781]
 gi|257839252|gb|EEV63726.1| conserved hypothetical protein [Staphylococcus aureus A9763]
 gi|257842364|gb|EEV66789.1| tyrosine recombinase XerC [Staphylococcus aureus A9719]
 gi|257849195|gb|EEV73177.1| xerC protein [Staphylococcus aureus A9299]
 gi|257850083|gb|EEV74036.1| xerC protein [Staphylococcus aureus A8115]
 gi|257853768|gb|EEV76727.1| tyrosine recombinase xerC [Staphylococcus aureus A6300]
 gi|257857407|gb|EEV80305.1| tyrosine recombinase xerC [Staphylococcus aureus A6224]
 gi|257863181|gb|EEV85945.1| tyrosine recombinase XerC [Staphylococcus aureus A5937]
 gi|262075158|gb|ACY11131.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           ED98]
 gi|282590597|gb|EFB95674.1| tyrosine recombinase XerC [Staphylococcus aureus A10102]
 gi|282764737|gb|EFC04862.1| tyrosine recombinase XerC [Staphylococcus aureus A8117]
 gi|285816934|gb|ADC37421.1| Site-specific tyrosine recombinase [Staphylococcus aureus 04-02981]
 gi|294968776|gb|EFG44798.1| tyrosine recombinase XerC [Staphylococcus aureus A8819]
 gi|297178446|gb|EFH37692.1| tyrosine recombinase XerC [Staphylococcus aureus A8796]
 gi|312829646|emb|CBX34488.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           ECT-R 2]
 gi|315131045|gb|EFT87029.1| hypothetical protein CGSSa03_05869 [Staphylococcus aureus subsp.
           aureus CGS03]
 gi|329727078|gb|EGG63534.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           21172]
          Length = 298

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 37/266 (13%), Positives = 94/266 (35%), Gaps = 22/266 (8%)

Query: 85  GSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVE---SRKHTPSSAIQFLTS 139
            + + ++  S++    Q  +  +      +    +  R+ +    S     +S  + +++
Sbjct: 16  RNFSEHTLKSYQDDLIQFNQFLEQEHLQLKTFEYRDARNYLSYLYSNHLKRTSVSRKIST 75

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLA 195
           +R  +++ +  +   INP + +  PK++    + + +E+M+       E +    + R+ 
Sbjct: 76  LRTFYEYWMTLDENIINPFVQLVHPKKEKYLPQFFYEEEMEALFKTVEEDTSKNLRDRVI 135

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVE--------LPDGFMKLL 245
            E L  +G+R S+      Q +    N  ++   K      V         + +      
Sbjct: 136 LELLYATGIRVSELVNIKKQDIDFYANGVTV-LGKGSKERFVPFGAYCRQSIENYLEHFK 194

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATK-AGV-NKSAHGVRKFSATISADAGAT 303
            +     +   +N   + +              + AGV     H +R   AT   + GA 
Sbjct: 195 PIQSCNHDFLILNMKGEAITERGVRYVLNDIVKRTAGVSEIHPHKLRHTFATHLLNQGAD 254

Query: 304 AHELMATYGWKTVDQAETYTKGADRI 329
              + +  G   +     YT  +++ 
Sbjct: 255 LRTVQSLLGHVNLSTTGKYTHVSNQQ 280


>gi|196247965|ref|ZP_03146667.1| integrase family protein [Geobacillus sp. G11MC16]
 gi|196212749|gb|EDY07506.1| integrase family protein [Geobacillus sp. G11MC16]
          Length = 384

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 60/370 (16%), Positives = 126/370 (34%), Gaps = 47/370 (12%)

Query: 23  YYFRKGHGRRIRLPYPHESTFIP-----AYMSALTGSTPKREYINSPRKKPTTLKWLISE 77
           +YFR   G+        +++F P          L     + +  +  ++        +  
Sbjct: 15  FYFRIDVGKDPVTGKRKQASFGPFRTKTEAKKELLKIKNQVDDGSYFKESTEDFSMFMER 74

Query: 78  YRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF 136
           +  +++  ++ + +  S E    + I++        +ITT  I S    +  T  S    
Sbjct: 75  WFNTSYKRTVEITTAKSREYVIRNHIMKYFQHKKINEITTFDIDSFYVDKLDTGYSGAYI 134

Query: 137 LTS---MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
                 +   F  AV+   V +NP  + + PK K+E    WT +++ +F +   + S   
Sbjct: 135 RQMHNLLNQAFDQAVKWSLVKVNPVKNAKPPKVKSEEKITWTVDEVNRFLNLIKDSSME- 193

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSI-----------------KTQKTGTIIT 234
           + +   +++G+R  +        +   N    I                 KT+K+   I+
Sbjct: 194 IPYLLAIFTGMRRGEVLGLKWDDVDFENKKIRIKRSLCFVSGKGLIFKEPKTKKSKRQIS 253

Query: 235 VELP--DGFMKLLAMTPIGKE----------TFFINNDKQKMNATQFSIWFKAKATKAGV 282
           +     +   K        KE               +D + ++       F     +A V
Sbjct: 254 ISQHVVNVLKKHKQKQEFQKEKLGVQYQDNNLIVCTDDGKPLDPRNLLRQFYRLIEEANV 313

Query: 283 NK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRIS 340
            + S H +R   ATI    G     +    G   V    + Y+  +D   L  + + +  
Sbjct: 314 PRISFHDLRHTHATILMQQGENPKVVSERLGHSRVGITLDLYSHVSD--DLQEQAAEKFE 371

Query: 341 S--VVDSDDP 348
           +  +  S +P
Sbjct: 372 NALLKQSQNP 381


>gi|187934306|ref|YP_001886003.1| site-specific tyrosine recombinase XerC [Clostridium botulinum B
           str. Eklund 17B]
 gi|187722459|gb|ACD23680.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum B str. Eklund 17B]
          Length = 329

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 48/281 (17%), Positives = 104/281 (37%), Gaps = 29/281 (10%)

Query: 75  ISEYRKSA----HWGSLAVNSRISFESYFDQIIRKSGDFDY-RKITTKHIRSGVE----S 125
           I+ Y+K       +  L         + F++I  +  D D+ + I  + + + +      
Sbjct: 35  IAAYKKDLTIFFRFMKLYRGLIKEKNTEFEEIDIRDIDDDFLKSIKLRDLYAFMSFIEKY 94

Query: 126 RKHTPSSAIQFLTSMRVLFKWAV-RQEYVAINPCLSVERPKRKTEGIRPWTKED----MQ 180
           R ++  +  + + +++  FK+   + + +  NP + +E PK         T +     + 
Sbjct: 95  RNNSAYARARKVATLKSFFKFLQGKAKIIVDNPTIELESPKINKRQPVYLTLDQSIHLLN 154

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
                    ++        L  G+R S+ C   ++ ++++I +I   K     TV L   
Sbjct: 155 SLDQSNKNYARDYCILILFLNCGMRLSELCGISIEKIRDDILTII-GKGNKERTVYLNAA 213

Query: 241 FMKLL----------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAH 287
            +K +             P  K+  F+++  + +N     I  K     AG+     + H
Sbjct: 214 CLKAIENYMRIRDDSKALPENKKFLFLSSHNKPINQRTVEIMIKKHIKNAGLTDGKYTPH 273

Query: 288 GVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGAD 327
            +R  +AT+    G      L    G + +   + YT   D
Sbjct: 274 KLRHTAATLMYKYGEVDIRSLQNILGHENISTTQIYTHVDD 314


>gi|256841220|ref|ZP_05546727.1| tyrosine recombinase XerC [Parabacteroides sp. D13]
 gi|256737063|gb|EEU50390.1| tyrosine recombinase XerC [Parabacteroides sp. D13]
          Length = 327

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 46/279 (16%), Positives = 98/279 (35%), Gaps = 15/279 (5%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           LI  +  +      +  S   + S  +  IRK G  + R ITT  +RS +   + T  + 
Sbjct: 52  LIDIFLSAKRVEGCSDKSMHYYRSTLNNAIRKIG-KNIRHITTDDLRSYLNDYQLTSGAT 110

Query: 134 ----IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
                     +   F W   ++Y+  +P   + + K        ++ E ++Q +    EG
Sbjct: 111 KVTVDNIRRILSSFFSWLEDEDYIVKSPVRRIHKVKVGKTVKETYSDEALEQMRDHC-EG 169

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDG----FMKL 244
            +     + L  +G+R  +  +     +   N   I T K      V           + 
Sbjct: 170 IRDLALIDLLASTGMRVGELVKLNRNDIDFENRECIVTGKGDKQRRVYFDARTKIHLQRY 229

Query: 245 LAMTPIGKETFFIN--NDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG 301
            A         F++      ++  +   I  +    +  + K   H  R+  AT++ D G
Sbjct: 230 FAERIDDNPALFVSLLAPYDRLQISGVEIRLRRLGRELNIPKVHPHKFRRTLATMAIDKG 289

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
               ++    G +++D    Y    ++  + + + + I 
Sbjct: 290 MPIEQVQHLLGHQSLDTTLQYA-MVNQTNVKMSHRKFIG 327


>gi|297559947|ref|YP_003678921.1| integrase family protein [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296844395|gb|ADH66415.1| integrase family protein [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 328

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 52/298 (17%), Positives = 96/298 (32%), Gaps = 46/298 (15%)

Query: 71  LKWLISEYRKS-AHWGSLAVNSRISFESYFDQIIRK---SGDFDYRKITTK----HIRSG 122
           L  + + +    +   +LA N+  ++     +        G     ++        +R+ 
Sbjct: 12  LARVCAAFLDHLSAERALADNTLAAYRRDLRRYRAYLAGHGVLSPERVGPAQVGDFLRAL 71

Query: 123 VESRKHTP----SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
            E     P    +SA + L ++R L ++A R+ +   +P   V  P       +      
Sbjct: 72  REGDADHPPLGAASAGRALAAVRGLHRFAAREGWTDADPAAEVSPPAPPMRLPKAVPLAS 131

Query: 179 MQQFKSFW-SEGSQP------------RLAFEFLLYSGLRCSDSCRAGVQHLQN------ 219
           +++        G+              R   E L  +G R S++    V  + +      
Sbjct: 132 VERLLDAAGPVGAPASGDRAGLLALRDRALLEVLYGTGARVSEAVGLDVDDVADAVEGDD 191

Query: 220 --NIFSIKTQKTGTIITVELPDGFMKLL-----------AMTPIGKETFFINNDKQKMNA 266
              +   +  K G    V L     + L           A +  G    F+N    ++  
Sbjct: 192 AVGLVRFR-GKGGRERVVPLGSHARRALSGYLVRARPGLAASGRGGPALFLNARGGRLTR 250

Query: 267 TQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
                   A A +AGV   S H +R   AT   D GA    +    G  +V   + YT
Sbjct: 251 QGGWGILAAVAERAGVEGVSPHTLRHSFATHLLDGGADIRVVQELLGHSSVTTTQIYT 308


>gi|207727540|ref|YP_002255934.1| tyrosine recombinase xerc 1 protein [Ralstonia solanacearum MolK2]
 gi|206590777|emb|CAQ56389.1| tyrosine recombinase xerc 1 protein [Ralstonia solanacearum MolK2]
          Length = 329

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 53/290 (18%), Positives = 93/290 (32%), Gaps = 42/290 (14%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF----DYRKITTKHIRSGVESR--- 126
           I+ Y     +   L+ ++  ++      + R    F    D  ++   HIRS +      
Sbjct: 20  IAAYLDVLKFERQLSPHTLENYTRELAVLQRLGARFATGIDLTRLLPHHIRSMIAHLHGN 79

Query: 127 KHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQ 181
             +  S  + L+  R  +KW A+R+  V  NP   V  PK      +  + E     M+Q
Sbjct: 80  GLSGRSIARALSVWRGWYKWLALREAAVTANPVDGVRAPKSPKRLPKALSVEQAVALMEQ 139

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN------------IFSIKTQKT 229
                 E  + R   E     GLR S+     ++H++                 +   K 
Sbjct: 140 LPGDDPETIRDRAVNELFYSCGLRLSELVGLDLRHVKAGDYASASWLDLEAREVMVLGKG 199

Query: 230 GTIITVEL--------------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKA 275
               TV +                   +     P      F++   +++   Q  I  K 
Sbjct: 200 NKYRTVPVGSKAAEALAAWLAARPQLAR-PDAAPEDAHALFLSARGKRLTQRQIQIRMKR 258

Query: 276 KATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
            A  AGV      H +R   AT    +      +    G  ++   + YT
Sbjct: 259 NAIAAGVPADVHPHVLRHSFATHMLQSSGDLRAVQELLGHASIASTQVYT 308


>gi|163839570|ref|YP_001623975.1| XerD/RipX family integrase/recombinase [Renibacterium salmoninarum
           ATCC 33209]
 gi|162953046|gb|ABY22561.1| integrase/recombinase (XerD/RipX family) [Renibacterium
           salmoninarum ATCC 33209]
          Length = 312

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 45/288 (15%), Positives = 87/288 (30%), Gaps = 39/288 (13%)

Query: 75  ISEYRKSAH-WGSLAVNSRISFESYFDQII-----------RKSGDFDYRKITTKHIRSG 122
           + EY +       LA N+  ++     +              +    +            
Sbjct: 5   LREYLQHLAVERGLAANTLAAYRRDLTRYTNFLASQGVRTPEQISRKNVTDFAQALSTGS 64

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
             +      SA + + ++R + K+   +     +P   V  P       +  +  ++ + 
Sbjct: 65  DGATALGVRSAARCIVALRGMHKFWALEATTTADPASEVHPPMAGRRLPKAISVAEVTKI 124

Query: 183 KSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN---------NIFSIKT-QK 228
                   + G + R   EFL  +G R S++    V  +               ++   K
Sbjct: 125 LEASGSDTATGLRDRALLEFLYSTGARISEAIGLDVDDVVGANSVGNDQSGPAVVRLFGK 184

Query: 229 TGTIITVEL-----------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKA 277
                 V L                 LL+ T       F+N    +++        K  A
Sbjct: 185 GSKERIVPLGSYGARAIEAYLVRGRPLLSATGKATPALFLNVRGGRLSRQSAWAILKTAA 244

Query: 278 TKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
            KA ++K  S H +R   AT   + GA    +    G  +V   + YT
Sbjct: 245 EKAEISKVVSPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQVYT 292


>gi|83748651|ref|ZP_00945669.1| Integrase/recombinase (XerC/CodV family) [Ralstonia solanacearum
           UW551]
 gi|207741931|ref|YP_002258323.1| tyrosine recombinase xerc 1 protein [Ralstonia solanacearum
           IPO1609]
 gi|83724695|gb|EAP71855.1| Integrase/recombinase (XerC/CodV family) [Ralstonia solanacearum
           UW551]
 gi|206593317|emb|CAQ60244.1| tyrosine recombinase xerc 1 protein [Ralstonia solanacearum
           IPO1609]
          Length = 329

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 53/290 (18%), Positives = 93/290 (32%), Gaps = 42/290 (14%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF----DYRKITTKHIRSGVESR--- 126
           I+ Y     +   L+ ++  ++      + R    F    D  ++   HIRS +      
Sbjct: 20  IAAYLDVLKFERQLSPHTLENYTRELAVLQRLGARFATGIDLTRLLPHHIRSMIAHLHGN 79

Query: 127 KHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQ 181
             +  S  + L+  R  +KW A+R+  V  NP   V  PK      +  + E     M+Q
Sbjct: 80  GLSGRSIARALSVWRGWYKWLALREAAVTANPVDGVRAPKSPKRLPKALSVEQAVALMEQ 139

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN------------IFSIKTQKT 229
                 E  + R   E     GLR S+     ++H++                 +   K 
Sbjct: 140 LPGDDPETIRDRAVNELFYSCGLRLSELVGLDLRHVKAGDYASAGWLDLEAREVMVLGKG 199

Query: 230 GTIITVEL--------------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKA 275
               TV +                   +     P      F++   +++   Q  I  K 
Sbjct: 200 NKYRTVPVGSKAAEALAAWLAARPQLAR-PDAAPEDAHALFLSARGKRLTQRQIQIRMKR 258

Query: 276 KATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
            A  AGV      H +R   AT    +      +    G  ++   + YT
Sbjct: 259 NAIAAGVPADVHPHVLRHSFATHMLQSSGDLRAVQELLGHASIASTQVYT 308


>gi|255525234|ref|ZP_05392176.1| integrase family protein [Clostridium carboxidivorans P7]
 gi|296188719|ref|ZP_06857107.1| phage integrase [Clostridium carboxidivorans P7]
 gi|255511097|gb|EET87395.1| integrase family protein [Clostridium carboxidivorans P7]
 gi|296046983|gb|EFG86429.1| phage integrase [Clostridium carboxidivorans P7]
          Length = 330

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 49/248 (19%), Positives = 96/248 (38%), Gaps = 25/248 (10%)

Query: 106 SGDFD---YRKITTKHIRSGVE----SRKHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINP 157
            GD D    RKIT   + + +      R+++  +  + + +++  FK+   + + +  NP
Sbjct: 68  IGDIDNSLLRKITLADLYAFLSFTEKYRQNSTYARARKVATLKSFFKFLSSRAKVIDENP 127

Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQ 215
            + +E PK         T ++ +      S  ++ R        L  GLR S+ C   + 
Sbjct: 128 AVDLESPKISKRNPTYLTLDESKSLLKAVSGRNKERDYCIITLFLNCGLRLSELCSINIS 187

Query: 216 HLQNNIFSIKTQKTGTIITVELPDGFMKLLAM----------TPIGKETFFINNDKQKMN 265
           +++ +I ++   K     TV L +  +K L              I K+  FI+ +  +M+
Sbjct: 188 NIKGDILTVI-GKGNKERTVYLNNACIKALNNYLKVRSENIDKIIDKDVLFISKNHTRMS 246

Query: 266 ATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAET 321
                +  K     A ++    + H +R  +AT+    G      L    G + V   + 
Sbjct: 247 KRTVEVMLKKHLINAELDSEKYTPHKLRHTAATLMYKYGNVDIRSLQKILGHENVSTTQI 306

Query: 322 YTKGADRI 329
           YT   D  
Sbjct: 307 YTHVDDEK 314


>gi|284045117|ref|YP_003395457.1| integrase [Conexibacter woesei DSM 14684]
 gi|283949338|gb|ADB52082.1| integrase family protein [Conexibacter woesei DSM 14684]
          Length = 313

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 47/280 (16%), Positives = 96/280 (34%), Gaps = 30/280 (10%)

Query: 85  GSLAVNSRISFE-------SYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFL 137
              A  +R ++         + D       D + R +  +   +G+      P++  + L
Sbjct: 32  RGAAEKTRHAYAVDGGQFVRWADAHRLAPADVNPRAL--RRYAAGLTEAGQAPTTVGRKL 89

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPR 193
            S+R LF+  V    +  NP   +  P++           ++          +    + R
Sbjct: 90  ASLRSLFRTLVEHGELQQNPADLLSAPRKAQRLPYVLKPVEVAALLDRIPADTALALRDR 149

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-ELPDGFMKLLA------ 246
             FE    SGLR  +     V  ++ +   ++ +  G    +    +  +K +A      
Sbjct: 150 ALFELAYASGLRAEELVMLDVGSIEFDGERVRVEGKGAKTRIVPAGEPALKAIARYLDRA 209

Query: 247 ----MTPIGKETFFINNDKQKMNATQFSIWFKAKAT-KAGV----NKSAHGVRKFSATIS 297
                T       F++   ++++ +      +  A   AGV      S H +R   AT  
Sbjct: 210 RPALATAESDGALFLSKSGRRLSTSDVRRRLRVWARQAAGVSTAGGVSPHALRHSFATHL 269

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGAD-RIRLGIKNS 336
            + GA    +    G  ++   + YT+    R+R    NS
Sbjct: 270 LENGADLRSIQELLGHASISTTQVYTRVESARLRSAYANS 309


>gi|288926256|ref|ZP_06420181.1| tyrosine recombinase XerD [Prevotella buccae D17]
 gi|288336947|gb|EFC75308.1| tyrosine recombinase XerD [Prevotella buccae D17]
          Length = 293

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 91/278 (32%), Gaps = 30/278 (10%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVESRKH 128
           +I ++     +  + +  +  S+               G   +  + +  IR  +ES   
Sbjct: 2   MIEKFLNYLKFELNRSERTVKSYGEDLRAFEEFFKNLDGHPSWESVDSDIIRDWMESMMD 61

Query: 129 TPSSA---IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK-- 183
             ++A    + L+++R  +++A+ +E V  +P   V  PK+K    +   + ++      
Sbjct: 62  KGNNATSINRRLSALRSFYRFALARELVVKDPAHDVVGPKKKKPLPQFLKENEINALLDS 121

Query: 184 SFWS---EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELP 238
             W    +  + R        +G+R S+        +   N+   + T K      +   
Sbjct: 122 DMWEDTYDDMRARTIVMTFYETGMRLSELTGLRDADVDFVNHELKV-TGKRNKQRIIPFG 180

Query: 239 DGFMKLLAMTPIGKET--------FFINNDKQKMNATQFSIWFKAK----ATKAGVNKSA 286
                 LA     ++         FF+ +    M   Q     K       T     ++ 
Sbjct: 181 AELAHTLADYKSLRDATERGNCGKFFLTDKGLAMQNAQVREIVKKHLSRVCTLK--KRTP 238

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           H +R   AT   +  A    L    G   +   E YT 
Sbjct: 239 HVLRHTFATAMLNHEAGLESLKRLLGHARLSTTEIYTH 276


>gi|330984816|gb|EGH82919.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 290

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 37/259 (14%), Positives = 93/259 (35%), Gaps = 19/259 (7%)

Query: 85  GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIR---SGVESRKHTPSSAIQFLT 138
             ++ ++  ++     ++    +K+    +  +  +H+R   +    +  +  S  + L+
Sbjct: 7   RQVSPHTLEAYRRDLGKVLAYCQKAQLSSWNDLDIQHLRSFTARQHQQGQSSRSLARMLS 66

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRL 194
           ++R  +K+  R+     +P   +  PK +    +    +   Q      E      + + 
Sbjct: 67  AVRGFYKYLNREGICQHDPANGMSPPKGERRLPKTLDTDRTAQLLDGGVEDDFLAHRDQA 126

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV--------ELPDGFMKLLA 246
             E L  SGLR S+     +  L      ++    G+   V        +  + ++ L A
Sbjct: 127 ILELLYSSGLRLSELTGLNLDQLDLRDGLVQVLGKGSKTRVLPVGSKARQALEIWLPLRA 186

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAK-ATKAGVNKSAHGVRKFSATISADAGATAH 305
           +T    +  F++   +++      +  KA    + G N   H +R   A+   ++     
Sbjct: 187 LTNPQDDAVFVSQQGKRLGPRTIQVRLKAAGERELGQNLHPHMLRHSFASHLLESSQDLR 246

Query: 306 ELMATYGWKTVDQAETYTK 324
            +    G   +   + YT 
Sbjct: 247 AVQELLGHADIKTTQIYTH 265


>gi|323143041|ref|ZP_08077746.1| phage integrase, N-terminal SAM-like domain [Succinatimonas hippei
           YIT 12066]
 gi|322417182|gb|EFY07811.1| phage integrase, N-terminal SAM-like domain [Succinatimonas hippei
           YIT 12066]
          Length = 307

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 46/275 (16%), Positives = 100/275 (36%), Gaps = 28/275 (10%)

Query: 89  VNSRISFESYFDQII-------------RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQ 135
            N+  S++    + +              + G+ + R +  +   S    R  + S A  
Sbjct: 23  PNTVASYDRVLRKALVSLKYNFPQLKSWSEIGEKEMRFLLKEFNFSFDAERLSSVSVA-H 81

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS---QP 192
            + ++   FK+ ++++ ++ NPC  +  PK +    +  +  ++ Q  +         + 
Sbjct: 82  DIYALSSFFKFLIKKKKLSSNPCSLIHAPKVRKPLPKVLSSNEIDQLFTVDPSSPKEIRD 141

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIG 251
           R   E L  SGLR  +     +  L      ++   K G   +V +    +  + +    
Sbjct: 142 RAIAELLFSSGLRVGELVALNLGDLDETAQEVRVFGKGGKERSVPVGSQALNWIRIYLKV 201

Query: 252 KETF-------FINNDKQKMNATQFSIWFKAKATKAG--VNKSAHGVRKFSATISADAGA 302
           ++ F       F+N   ++M            A+K+G  +  S H +R   AT     GA
Sbjct: 202 RDAFNPEDTALFLNRFGRRMTTRAVQQNLDKLASKSGLSIKISPHKLRHSFATELLGNGA 261

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
               +    G  ++   + YT   +  +L    S+
Sbjct: 262 DLRMVQEMLGHSSLAATQVYTH-INFAKLQEIFSK 295


>gi|295135108|ref|YP_003585784.1| tyrosine type site-specific recombinase [Zunongwangia profunda
           SM-A87]
 gi|294983123|gb|ADF53588.1| tyrosine type site-specific recombinase [Zunongwangia profunda
           SM-A87]
          Length = 363

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 48/257 (18%), Positives = 92/257 (35%), Gaps = 11/257 (4%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFL 137
           Y         +V++  ++ ++F++ I      D   +    IR  ++S      S     
Sbjct: 98  YLLKLELKRYSVSTIKTYVTFFEKFINHYSQRDIDSLDECEIRLFLQSLIQENKSNSYIN 157

Query: 138 TSMRVL-FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196
            ++  + F + V       N    +ERP+R+    +  ++E++       +   + R   
Sbjct: 158 QAINAIKFYYEVVCGM--PNRFYDMERPRREHRLPQVISREEIFAIIEN-TNNIKHRCIV 214

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLLAMTPIG--- 251
           E L  SGLR S+     +Q + +      IK  K        L +  +  L         
Sbjct: 215 ELLYSSGLRRSELLNLKLQDIDSKRMLIKIKAGKGNKDRFTILSEKCLAHLRQYYRKWKP 274

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMA 309
           +   F     ++ +        K  ++KA  NK  S H +R   AT   ++G    ++  
Sbjct: 275 EIYLFEGQPGKQYSGASVLKVVKNASSKAKPNKNISPHILRHSFATHLLESGVDLRKIQV 334

Query: 310 TYGWKTVDQAETYTKGA 326
             G  +    E YT  A
Sbjct: 335 LLGHGSTKTTEIYTHVA 351


>gi|238925026|ref|YP_002938542.1| integrase/recombinase-like protein [Eubacterium rectale ATCC 33656]
 gi|259710431|sp|C4ZGY6|XERC_EUBR3 RecName: Full=Tyrosine recombinase xerC
 gi|238876701|gb|ACR76408.1| integrase/recombinase-like protein [Eubacterium rectale ATCC 33656]
          Length = 306

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 42/280 (15%), Positives = 94/280 (33%), Gaps = 28/280 (10%)

Query: 75  ISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPS 131
           IS Y +       L   +  ++     Q   +    D  KI +  +   +E    K+ P 
Sbjct: 8   ISSYLEYCLAQKRLDEKTIKAYRIDLIQFYNEISISDPCKIASYDLEKYIEKMHLKYKPK 67

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT-EGIRPWTKEDMQQF-------K 183
           S  + + S++  F +   +  +  NP   ++   R+     +      +++F       +
Sbjct: 68  SVRRKIASIKAFFHYLEYKNIILQNPFNKIQIHFREPVILPKTIPLYIVEKFLFTIYKQR 127

Query: 184 SFWSEGSQPRLAF------EFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTII-- 233
           S      Q R A       E L  +G+R S+ C   +  +   + +  I  + +   I  
Sbjct: 128 SAAKTNYQKRNALRDAAIVELLFSTGIRISELCNLKISDVNLIDGVILIYGKGSKERILQ 187

Query: 234 -----TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286
                 + +   +        +    FF +   + ++           A+ + ++   + 
Sbjct: 188 IGNSSVLNILKEYKNDFYNEIVQCNHFFSSQSGKPLSDQSVRRMINKYASLSSIDLHITP 247

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           H  R   AT   +A      +    G  +++  + YT  A
Sbjct: 248 HMFRHTFATSLLEADVDIRYIQEMLGHSSINITQIYTHVA 287


>gi|171056822|ref|YP_001789171.1| integrase family protein [Leptothrix cholodnii SP-6]
 gi|170774267|gb|ACB32406.1| integrase family protein [Leptothrix cholodnii SP-6]
          Length = 312

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 37/270 (13%), Positives = 84/270 (31%), Gaps = 31/270 (11%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIR---SGVESRKHTPSSAIQFLTS 139
             LA  +   + +   ++   + +      ++   H+R   + +  +   P S    L +
Sbjct: 23  RRLAPRTLTMYGAALLRLEHAAAEQQLALTQVRPPHVRRWAAMLHGQGLGPRSIAIHLAA 82

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS------QPR 193
            R L++W  R+  V+ NP   +  PK      +    ++           +      +  
Sbjct: 83  WRGLYRWLGREGQVSANPVDGLRPPKAGRPLPKALAVDEAVVLADHHDPATDPLLDLRDH 142

Query: 194 LAFEFLLYSGLRCSDSCRA---------GVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
              E L   GLR ++             G   L+     +   K      V +    +  
Sbjct: 143 AMTELLYGCGLRAAELIGLDCIAGPDAAGWIDLEGGDAQV-LGKGSNRRIVPVGPPAVAA 201

Query: 245 LAM--------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294
           +             G+   F++    ++  +Q       +A  AG+  +   H +R   A
Sbjct: 202 VQAWLAVRHQMARAGELALFVSRRGTRLTDSQLRRRLAQRAQSAGLTSHVHPHMLRHSYA 261

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324
           +    +      +    G   +   + YT+
Sbjct: 262 SHLLQSSGDLRAVQELLGHAQISTTQVYTR 291


>gi|320353406|ref|YP_004194745.1| integrase family protein [Desulfobulbus propionicus DSM 2032]
 gi|320121908|gb|ADW17454.1| integrase family protein [Desulfobulbus propionicus DSM 2032]
          Length = 350

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 59/324 (18%), Positives = 110/324 (33%), Gaps = 19/324 (5%)

Query: 35  LPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRIS 94
           +    ++       +A   +  K +    PR+   TL      Y ++      A+ ++  
Sbjct: 27  ISRTFDTKGEARIWAAEMEAEMKNQRFKDPRRAHRTLDEAFDRYLETVT-SQKALTTQER 85

Query: 95  FESYFDQIIRKSG-DFDYRKITTKHIRSGVESRKHTPSSAIQFLTSM---RVLFKWAVRQ 150
                  +  K G +     IT   +    + R  + S+    L       +  K     
Sbjct: 86  ERRIAKLLKEKFGRNTLLPDITPSVVAKYRDQRLKSVSAYAVRLELALLSHLFIKACKEW 145

Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA--FEFLLYSGLRCSD 208
           E    NP  S+ERPK     I    +++  +           RL      LL++ +R S+
Sbjct: 146 ELPIENPVKSIERPKVPKGRIFFLKEDEAVRLLKECKASRNKRLYPYVLILLHTAMRPSE 205

Query: 209 SCRAGVQHLQNNIFSIKTQKTG-TIITVELPDG---FMKLLAMTPIGKETFFINNDKQK- 263
           +       +  +  S+    T     TV L       ++ L  T    E  F+  + +  
Sbjct: 206 AAGLKWHQIDFDRRSLTLYITKNEPRTVPLTKTVITALEDLKKTAFDNEFVFLKGEGKSQ 265

Query: 264 ----MNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
               + +++F   F     +A +     H +R  +A+    AG     L A  G  T+  
Sbjct: 266 HAQNIPSSRFRPSFDRARERAKLPLLHMHDLRHTAASQMLMAGTDIRTLAAILGHSTLQM 325

Query: 319 AETYTKGADRIRLGIKNSRRISSV 342
              YT   +  +L  K   RI+S+
Sbjct: 326 VLRYTHLLNEHKL--KAVDRINSL 347


>gi|319641592|ref|ZP_07996279.1| hypothetical protein HMPREF9011_01877 [Bacteroides sp. 3_1_40A]
 gi|317386792|gb|EFV67684.1| hypothetical protein HMPREF9011_01877 [Bacteroides sp. 3_1_40A]
          Length = 386

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 46/303 (15%), Positives = 100/303 (33%), Gaps = 26/303 (8%)

Query: 39  HESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSA-----HWGSLAVNSRI 93
            ++ F+  Y         +R             +     Y +        +  +      
Sbjct: 88  EDTPFLEYYRK----MVEERHKNPESEGNWGNWRS-CLRYLEIYCDEKTTFKDITPEFIN 142

Query: 94  SFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYV 153
            F+ + + + + +    +++   +  R     +  + +S + +   +R     A  +  +
Sbjct: 143 GFKDFLNNVEKDT----HKRTGPRRERDVF--QGLSQNSKVSYFNKLRACINQAYDERII 196

Query: 154 AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG 213
            +NP   +E  K         T E+++Q  +        + AF F   +GLR SD  +  
Sbjct: 197 PVNPLRGIEGFKAAEVKRDYLTLEEVKQLAATPCRYPILKRAFLFSCLTGLRKSDIQKLT 256

Query: 214 VQHL----QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF 269
              +           K +KTG    +++     K L      ++  F         + + 
Sbjct: 257 WSEVQKFGDYTRIVFKQKKTGGQEYLDISSQAEKYLGERGNPEDPVFTGFTYGAWTSLEL 316

Query: 270 SIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
             W    +  A +NK  + H  R   A +  D GA  + +    G K +   + Y K  D
Sbjct: 317 QRW----SMAANINKNLTFHCGRHTFAVLMLDLGADIYTVSKLLGHKELATTQIYAKVLD 372

Query: 328 RIR 330
           + +
Sbjct: 373 KNK 375


>gi|295696553|ref|YP_003589791.1| integrase family protein [Bacillus tusciae DSM 2912]
 gi|295412155|gb|ADG06647.1| integrase family protein [Bacillus tusciae DSM 2912]
          Length = 305

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 44/276 (15%), Positives = 87/276 (31%), Gaps = 20/276 (7%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRK 127
           T +    E+         +  +   + ++     ++  D   D   +    +      R+
Sbjct: 5   TWQDAFQEFLLCKQAEGRSPLTLRDYHNHVPAFFQEHPDTWPDVHALKRAVVAHFAGLRE 64

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG-IRPWTKEDMQQFKSFW 186
            + +        ++  F W VR+EY+  NP   +  PKRK +G  R    + +++     
Sbjct: 65  RSATHYNLRREYLKAFFSWCVREEYLPKNPVDGI--PKRKNDGTPRNLDDQTLKRLLELP 122

Query: 187 S----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIITVELP 238
                 G +        L +G+R  ++ +    H       +     T KT T  TV + 
Sbjct: 123 DKSTYAGVRDHALVLLQLDTGIRPGEALQLLPAHFNLGALEVTVPSATAKTRTARTVVMS 182

Query: 239 DGFMKLLAMTP-------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRK 291
               K +                 F     + M+   +           GV  + + +R 
Sbjct: 183 PQTAKAIRRLLSVRPADWTDDVPVFATYSGRPMDRNMWGKRLAQYGRTLGVRITPYMLRH 242

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
            SA +    G     L    G  ++   + Y   AD
Sbjct: 243 SSALMFLRGGGHVFALQRQLGHTSLVMTKRYVHLAD 278


>gi|255764498|ref|YP_003065000.2| site-specific tyrosine recombinase XerD [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254547849|gb|ACT57060.2| site-specific tyrosine recombinase XerD [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 300

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 42/267 (15%), Positives = 92/267 (34%), Gaps = 30/267 (11%)

Query: 88  AVNSRISFESYFDQIIRKSGDFD--YRKITTKHIRSGVE---SRKHTPSSAIQFLTSMRV 142
           ++N+  +++    ++     + +      +T H+ S +     RK   SS  + ++ +R 
Sbjct: 9   SINTLSAYKRDLKEMQNFLNNKEISLSAASTNHLISYLNHLSQRKLVTSSQRRKISVIRQ 68

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS-----------Q 191
            + +   +     NP  ++E PK+     +   K+ +          +           +
Sbjct: 69  FYNFLCYEGLRKDNPSDTLELPKKNHILPKTLHKDTIANLLEQAKIEAENPAPGQWKRVR 128

Query: 192 PRLAFEFLLYSGLRCSDSCRA--GVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP 249
             L  E L  +G+R S+         +L      I+ +     + +  P     L     
Sbjct: 129 IFLLIELLYATGMRVSELVTLSAHTLNLTERTMIIQGKGNKERLVILSPSALHALQMYKK 188

Query: 250 I-------GKETFFI--NNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATIS 297
                   G + +    +     ++   F+   KA A +AG+ K   S H +R   A+  
Sbjct: 189 TCSSMKMTGNDLWLFPSSTKTGHLSRQVFARDLKALAARAGIQKKNISPHIIRHAFASHL 248

Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324
            + GA    +    G   +   + YT 
Sbjct: 249 LEGGADLRTIQILLGHTDISTTQIYTH 275


>gi|148273162|ref|YP_001222723.1| site-specific tyrosine recombinase XerD [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
 gi|147831092|emb|CAN02037.1| integrase/recombinase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 328

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 47/297 (15%), Positives = 88/297 (29%), Gaps = 32/297 (10%)

Query: 60  YINSPRKKPTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH 118
             ++  + P  L+  +  + +       L+ N+  ++     +      D          
Sbjct: 12  APDAVPEVPVALRRAVDRWLRHVEVERGLSRNTLQAYRRDLARYTAHLADEGVADPADAS 71

Query: 119 IRSGV---------ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
                         E    T SS  + L+S+R   ++ V +  V ++       PK  + 
Sbjct: 72  AAHIAAFAQRVRDPEHGGLTASSLARMLSSVRSFHRFLVEEGIVEVDVSAEQRPPKLPSR 131

Query: 170 GIRPWTKEDMQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----- 220
             +  + E M +             + +   E L  +G R S+     V  +        
Sbjct: 132 LPKAVSIETMGRILDATDGDEPLRVRDKALLELLYATGARVSEITALTVDDVLGADGAAA 191

Query: 221 IFSIKTQKTGTIITVELPDGFMK-----------LLAMTPIGKETFFINNDKQKMNATQF 269
                  K G    V +     +           +LA         F+      ++    
Sbjct: 192 ELVRVLGKGGKQRIVPVGSFARRAVDAYLVRVRPILAARGSATPALFLGLRGHALSRQNA 251

Query: 270 SIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            +  KA A +AGV    S H  R   AT     GA    +    G  +V   + YT+
Sbjct: 252 WLVIKAAAERAGVAEEISPHTFRHSFATHLIAGGADVRVVQELLGHSSVATTQIYTR 308


>gi|119869601|ref|YP_939553.1| phage integrase family protein [Mycobacterium sp. KMS]
 gi|119695690|gb|ABL92763.1| phage integrase family protein [Mycobacterium sp. KMS]
          Length = 300

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 37/286 (12%), Positives = 90/286 (31%), Gaps = 20/286 (6%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISF----ESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
           L  L+  ++ +      A  +  ++     ++              K   +     +   
Sbjct: 8   LADLLPSWQLALRSEGKAPGTIKTYTDGVAAFLRWCAATDTPPAITKPAVQGFIGDLLDG 67

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
               ++A+     +R   +W   +  +  +P + ++RP +  + +   + + ++      
Sbjct: 68  GAESATAVARFKGVRQFARWMADEGEIDGDPLVGLKRPAQVRKVVPALSDDQLRALLDAC 127

Query: 187 S----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDG 240
                +  +       +  +G+R ++     V  +     +  ++  K      V     
Sbjct: 128 RGKTLKHRRDEAIVRLMAETGMRAAELLGLTVADVDLTRGLAIVRRGKGSKGRVVPFGPQ 187

Query: 241 FMKLLAM---------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVR 290
               L                   ++    +           K +A  AG+ N  AH +R
Sbjct: 188 TGAALDRYVRSARRENRLTDHGPLWVGAGGKTFGYHGLDGTLKERAAAAGIANFHAHRLR 247

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
             +AT    AG +   LMA  GW T    + YT  +   R  +++ 
Sbjct: 248 HTAATRWLRAGGSEQGLMAVAGWSTRAMIDRYTGASAAERAAVESR 293


>gi|68637890|emb|CAI36095.1| XerD-like site-specific recombinase [Pseudomonas syringae pv.
           phaseolicola]
          Length = 319

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 51/276 (18%), Positives = 106/276 (38%), Gaps = 31/276 (11%)

Query: 84  WGSLA-VNSRISFESYFDQIIRKSGDF---DYRKITTKHI---RSGVESRKHTPSSAIQF 136
           + +L    +R ++++         G     D+R++T  H+   R+ +E R    ++  + 
Sbjct: 33  FANLDNPRTRRAYQNDLTDFSSFIGLASADDFRQVTRSHVLAWRADLEHRGLAGATIRRK 92

Query: 137 LTSMRVLFKWAVRQE-YVAINPCLSVERPKRKT-EGIRPWTKED-----MQQFKSFWSEG 189
           L ++  LF   +        NP   V+RP+ +T EG  P   +      ++   +   +G
Sbjct: 93  LAALASLFDHLLENNAVAGGNPVHGVKRPRIETNEGKTPALGDHQAKQLLEAPDTETLKG 152

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTII-TVELPDGFMKLLA 246
            + R     LLY GLR  ++ +     L  +  I  ++    G+ +  + L     + + 
Sbjct: 153 LRDRAILAVLLYHGLRREEAAQLKTGDLQERRGIKHLRVHGKGSKVRFLPLHPVAAERIY 212

Query: 247 M---TPIGKET----FFINNDKQ----KMNATQFSIWFKAKATKAGV---NKSAHGVRKF 292
                 + ++T     F +         + A       +A A KAG+   +   HG+R  
Sbjct: 213 AYLEQDVERDTAPGPLFRSLRGTTTGAGITANGIYTVVEAYAKKAGIVVEHLGVHGLRAT 272

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           +AT + +  A   ++    G   +     Y +   R
Sbjct: 273 AATNALEHDADIAKVQMWLGHANISTTRLYDRRGQR 308


>gi|317486704|ref|ZP_07945521.1| phage integrase [Bilophila wadsworthia 3_1_6]
 gi|316922087|gb|EFV43356.1| phage integrase [Bilophila wadsworthia 3_1_6]
          Length = 339

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 44/284 (15%), Positives = 90/284 (31%), Gaps = 44/284 (15%)

Query: 85  GSLAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQF 136
              +  +  ++ +   Q        +       ++   H +             SS  + 
Sbjct: 26  KGFSPATISAYRTDLLQFEEWLHREQHSLARPGELEKYHFQDYSAHLFHEGQARSSIGRK 85

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----------- 185
           L+++R LF++ ++ + +  NP   V  PKR+         + M                 
Sbjct: 86  LSALRSLFRYLMKMKKIDKNPAKLVRNPKRELRHPTALNVDQMFTLLDEASVESGGAAGL 145

Query: 186 --------------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
                          +  ++     E L  SGLR S++    V  +      I+    G+
Sbjct: 146 DGSRQAEQTVTDREHAGHTRDLALAELLYGSGLRISEALDLDVDDVDPASGFIRVIGKGS 205

Query: 232 IITV-ELPD--------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
              +  L D               + P  ++  F+ N  +++N  Q +         AG+
Sbjct: 206 KERIAPLSDTSVRALFLWLRVRALIAPPAEKALFVGNRGKRLNRRQAARILDEIRKSAGL 265

Query: 283 --NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             + S H +R   AT   + GA    +    G  ++   + YT 
Sbjct: 266 PQHLSPHTLRHTFATHMLENGADMRSVQELLGHASLSTTQRYTH 309


>gi|120600505|ref|YP_965079.1| tyrosine recombinase XerC [Shewanella sp. W3-18-1]
 gi|146294663|ref|YP_001185087.1| tyrosine recombinase XerC [Shewanella putrefaciens CN-32]
 gi|166918902|sp|A4YBF5|XERC_SHEPC RecName: Full=Tyrosine recombinase xerC
 gi|166918903|sp|A1RPD0|XERC_SHESW RecName: Full=Tyrosine recombinase xerC
 gi|120560598|gb|ABM26525.1| tyrosine recombinase XerC [Shewanella sp. W3-18-1]
 gi|145566353|gb|ABP77288.1| tyrosine recombinase XerC [Shewanella putrefaciens CN-32]
 gi|319427899|gb|ADV55973.1| tyrosine recombinase XerC [Shewanella putrefaciens 200]
          Length = 302

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 37/274 (13%), Positives = 92/274 (33%), Gaps = 20/274 (7%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSG-DFDYRKITTKHIR---SGVESRKHTPS 131
             Y  S     L+ ++  ++    +++      D     +  +H +   + +  +  +P 
Sbjct: 16  ERYLHSER--QLSAHTVHNYLYELNRVSTLLPKDVTLLNVGREHWQQVLAKLHRKGLSPR 73

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR---PWTKEDMQQFKSFWSE 188
           S    L++++   ++ +R+  +A+NP   +  PK+     +     +   + + +     
Sbjct: 74  SLSLCLSAIKQWGEFLLREGMIAVNPAKGLSAPKQAKPLPKNMDVDSLTHLLEIEGTDPL 133

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM 247
             + +   E    SGLR ++     +  +Q ++  ++   K      V +    +K L  
Sbjct: 134 TLRDKAMMELFYSSGLRLAELAALNLSSVQYDLREVRVLGKGNKERIVPVGSYAIKALEA 193

Query: 248 T-------PIGKETFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSAHGVRKFSATISA 298
                   P      F+    ++++                  V    H +R   AT   
Sbjct: 194 WLVCRQQIPCEDCALFVTGKGRRLSHRSIQSRMAKWGQEQALSVRVHPHKLRHSFATHML 253

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           ++ A    +    G   +   + YT   D   L 
Sbjct: 254 ESSADLRAVQELLGHANLSTTQIYT-SLDFQHLA 286


>gi|220912958|ref|YP_002488267.1| integrase [Arthrobacter chlorophenolicus A6]
 gi|219859836|gb|ACL40178.1| integrase family protein [Arthrobacter chlorophenolicus A6]
          Length = 295

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 42/280 (15%), Positives = 99/280 (35%), Gaps = 28/280 (10%)

Query: 85  GSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGVESRKHT---PSSAIQFLT 138
            +L+ ++R ++    +         G  +   +    +R  + ++  +    ++  +   
Sbjct: 12  RALSPHTRRAYLGDLESLLAFAASEGAAELEDLELGTLRRWLGAQSQSGAARATLARRSA 71

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS-------- 190
           ++R    WA+R+EY+  +P L ++ PKR+           +++      +G+        
Sbjct: 72  TIRAFTAWALREEYLEADPALRLKAPKREQSLPGVLQAPQLERLLKELEDGAADGDPMAV 131

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---------IITVELPDGF 241
           + R   E L  +G+R  +     V +L  +  +++    G             + + D  
Sbjct: 132 RNRAIVELLYATGIRVGELAALDVDNLDPDRRTLRVIGKGNKERTVPYGVPAALAVDDWL 191

Query: 242 MKL--LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATIS 297
            +   L          F+     +++  Q            G   +   H +R  +AT  
Sbjct: 192 RRGRPLMAKDTSGPALFLGLRGGRVDQRQVRSVVHGLFEAMGDTSASGPHALRHSAATHL 251

Query: 298 ADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNS 336
            D GA    +    G  ++   + YT    DR+R   + +
Sbjct: 252 LDGGADLRAVQEILGHSSLATTQIYTHVSVDRLRKSYQQA 291


>gi|126176181|ref|YP_001052330.1| tyrosine recombinase XerC [Shewanella baltica OS155]
 gi|125999386|gb|ABN63461.1| tyrosine recombinase XerC [Shewanella baltica OS155]
          Length = 306

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 33/271 (12%), Positives = 90/271 (33%), Gaps = 21/271 (7%)

Query: 72  KWL--ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-FDYRKITTKHIR---SGVES 125
           +WL     Y  +     L+ ++  ++    ++      D  +   ++ +H +   + +  
Sbjct: 14  QWLQTFERYLSTER--QLSAHTVRNYLYELNRGSDLLPDGVNLLNVSREHWQQVLAKLHR 71

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +  +P S    L++++   ++ +R+  + +NP   +  PK+     +    + +      
Sbjct: 72  KGLSPRSLSLCLSAVKQWGEFLLREGVIELNPAKGLSAPKQAKPLPKNIDVDAISHLLDI 131

Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT--------IIT 234
                   + +   E    SGLR ++     +  +Q ++  ++    G          + 
Sbjct: 132 EGTDPLSLRDKAMMELFYSSGLRLAELAALNLSSVQYDLKEVRVLGKGNKERIVPVGRLA 191

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSAHGVRKF 292
           +     ++      P      F+    ++++                  V    H +R  
Sbjct: 192 IAALLNWLNCRKQIPCEDNALFVTEKGKRLSHRSIQARMAKWGQEQALSVRVHPHKLRHS 251

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYT 323
            AT   +A A    +    G   +   + YT
Sbjct: 252 FATHMLEASADLRAVQELLGHANLATTQIYT 282


>gi|313900576|ref|ZP_07834069.1| site-specific recombinase, phage integrase family [Clostridium sp.
           HGF2]
 gi|312954638|gb|EFR36313.1| site-specific recombinase, phage integrase family [Clostridium sp.
           HGF2]
          Length = 356

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 46/326 (14%), Positives = 120/326 (36%), Gaps = 17/326 (5%)

Query: 24  YFRKGHGR--RIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKS 81
           Y RK   R  + ++   +E+  +  + S    +     Y    +    T + +  E+  S
Sbjct: 36  YKRKDGMRHQKRKIIGYYETEEMAEF-SLWNYNKNPALYAEIEKLGTITFENVYMEW-SS 93

Query: 82  AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMR 141
             + +++  +   +++ + +      +     +   H +  ++    + SS ++  + M 
Sbjct: 94  TKYRNISQTAINGYKAAYAR-CSSIWNVRMSDLRAMHFQRIMDESTLSLSSDLKLRSLMM 152

Query: 142 VLFKWAVRQEYVAINPCLSV--ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199
           ++ ++AV+ + +  N    V   R +   E  +P+T+ ++++     +           +
Sbjct: 153 LVCEYAVQNDIIQKNYAKYVIINRKEDHPEIHKPFTEWEIEKLFDHENIPFVD--TILIM 210

Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIKTQKT---GTIITVELPDGFMKLLAMTPIGKETFF 256
           +Y+G R  +      + +     +I+       G    V + +   K +    +    + 
Sbjct: 211 IYTGFRVGELFNIRREDVDVQNMTIRGGSKIEAGKNRLVPVHEKIQKYVMDYYLQGHEYL 270

Query: 257 INN--DKQKMNATQFSIW-FKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGW 313
           I++   ++K N   +    F        +    H  R   AT  ++ GA +  +    G 
Sbjct: 271 ISDADTRKKFNYHMYRNQYFDKIMDMLEMEHLPHDCRHTFATRLSNYGANSTCIKKLIGH 330

Query: 314 KTVDQAE-TYT-KGADRIRLGIKNSR 337
            +    E  YT K   ++R  I   +
Sbjct: 331 SSYTTTEKIYTHKDVAQLRRAISTLK 356


>gi|264680261|ref|YP_003280171.1| phage integrase [Comamonas testosteroni CNB-2]
 gi|262210777|gb|ACY34875.1| phage integrase [Comamonas testosteroni CNB-2]
          Length = 348

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 42/292 (14%), Positives = 89/292 (30%), Gaps = 41/292 (14%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQI--IRKSGDFDYRKITTKHIRSGVESR---K 127
           ++  Y +       LA  +   +     ++    ++   +   +   HIR          
Sbjct: 19  VVHSYLEHVRVQKRLAERTHTLYALDLIKLQSFAQAAAQELLTLQPSHIRRFAAQMHGAG 78

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            +       L+  R  F+WA ++E V  NP   V  PK      +    +D  Q  SF +
Sbjct: 79  RSARGIALILSGWRSFFRWAAQRELVPFNPVEGVRGPKAAKPLPKALAVDDAVQLASFHN 138

Query: 188 E------GSQPRLAFEFLLYSGLRCSDSCRAGV------QHLQNNIFSIK------TQKT 229
                   ++     E L   GLR ++     +      +H       ++        K 
Sbjct: 139 PEADPWMEARDVAMTELLYSCGLRVAELVGLDLRPDQQSRHEGRGWIDLEAGDAHVQGKG 198

Query: 230 GTIITVELPDGFMKLLAM---------------TPIGKETFFINNDKQKMNATQFSIWFK 274
                V +    ++ L                     +   F+    ++++A       K
Sbjct: 199 SKRRIVPVGRMAIEALQRWLALRSSALVGTAQLKAQDEAALFVGRRGERLSAQSVWSRLK 258

Query: 275 AKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            +  +AG+      H +R   A+    +      +    G  ++   + YT+
Sbjct: 259 QRGQQAGLATGVHPHVLRHSFASHMLQSSGDLRAVQELLGHSSIATTQIYTR 310


>gi|219871693|ref|YP_002476068.1| putative site-specific tyrosine recombinase XerC [Haemophilus
           parasuis SH0165]
 gi|219691897|gb|ACL33120.1| possible site-specific tyrosine recombinase XerC [Haemophilus
           parasuis SH0165]
          Length = 261

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 36/239 (15%), Positives = 83/239 (34%), Gaps = 16/239 (6%)

Query: 102 IIRKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158
           +++++    ++++    +R  +     +  +  S    L ++R    + V+Q  + +NP 
Sbjct: 1   MLQQAEVTRWQELDASTVRWILSQSHKQGLSAKSIGLRLVALRQFLAFLVKQGELKVNPT 60

Query: 159 LSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQ 215
           L ++ PK      +    E + Q  +         +     E +  SGLR S+     + 
Sbjct: 61  LGIKSPKANKHLPKNIDAEQIGQLLNIDSNEPLDLRDVAMMELMYSSGLRLSELQGLDLG 120

Query: 216 HLQNNIFSIKT-QKTGTIITVEL----PDGFMKLLAMT---PIGKETFFINNDKQKMNAT 267
            +      ++   K      V +     D   + LA+           F+N    +++  
Sbjct: 121 DMDLPNREVRLLGKGNKERIVPIGSKALDAIEQWLAVRGQFHPKDNAVFLNQRGGRLSHR 180

Query: 268 QFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              +  K    K  ++     H +R   AT   +A      +    G  ++   + YT 
Sbjct: 181 SIQLAMKKWGQKQALDTHLHPHKLRHSFATHMLEASQDLRAVQELLGHSSLSTTQIYTH 239


>gi|225012642|ref|ZP_03703077.1| integrase family protein [Flavobacteria bacterium MS024-2A]
 gi|225003175|gb|EEG41150.1| integrase family protein [Flavobacteria bacterium MS024-2A]
          Length = 298

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 40/264 (15%), Positives = 99/264 (37%), Gaps = 28/264 (10%)

Query: 88  AVNSRISFESYFDQIIR----KSGDFDYRKITTKHIRSGVES---RKHTPSSAIQFLTSM 140
           +++++ +++S  +Q       +       +++   IRS + S   + ++  +  + ++ +
Sbjct: 17  SLHTQKAYQSNLEQFEAFLLSEGSKASLEEVSYSEIRSWIVSLIQKGNSTRTVNRKISVL 76

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS--FWS---EGSQPRLA 195
           R  +K+ +R   +  +P    +  K  T+   P++++++ Q      +     G   +  
Sbjct: 77  RSYYKFLMRTGSIDSSPLKEHKALKMATQVQLPFSQDEVAQLLDSGHFPDSYLGVLQKTI 136

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFM---------KLL 245
                Y+G+R S+     + ++  +   IK   K      + L              ++ 
Sbjct: 137 LSLFYYTGIRRSELIELKLLNVDLSKGLIKVLGKRNKERLIPLLPEIKVELQLMLDCQVR 196

Query: 246 AMTPIGKETFFINNDKQKMN----ATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAG 301
                 +  FF      K+         + +F   +TK    +S H +R   AT   D G
Sbjct: 197 NNIDREEGLFFTTQQGFKLTDSFVYATVNDYFSKVSTK--TKRSPHVLRHSFATHLLDQG 254

Query: 302 ATAHELMATYGWKTVDQAETYTKG 325
           A  + +    G  ++   + YT  
Sbjct: 255 ADLNSIKDLLGHSSIAATQHYTHS 278


>gi|110635391|ref|YP_675599.1| site-specific tyrosine recombinase XerD [Mesorhizobium sp. BNC1]
 gi|110286375|gb|ABG64434.1| tyrosine recombinase XerD subunit [Chelativorans sp. BNC1]
          Length = 308

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 48/292 (16%), Positives = 99/292 (33%), Gaps = 34/292 (11%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYF---DQIIRK--SGDFDYRKITTKHIRSGVES 125
              I  + +        + N+  S+       D  +     G F       +   + + +
Sbjct: 4   GAKIEAFLEMMAAERGASDNTLASYRRDLGDADAYLEAPCGGVFKASAADIRKYLADMTA 63

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           R    ++  + L+S+R  FK+   +     +P   ++ PK+     +  ++ +M      
Sbjct: 64  RGFASTTQARKLSSLRQFFKFLYSEGMRDDDPTGVLDSPKKGRPLPKTLSESEMNALLER 123

Query: 186 W-------SEGSQPRLA-------FEFLLYSGLRCSDSCRAGVQ-HLQNNIFSIKTQKTG 230
                     G+  R+A        E L  SGLR S+     ++  L++  F     K G
Sbjct: 124 AADEAREAPAGTPARVAAQRLSTLLEMLYASGLRVSELVSLPLRVALRDERFFTVRGKGG 183

Query: 231 TIITVELPDGFMKLLAMT-------PIGKETFFIN---NDKQKMNATQFSIWFKAKATKA 280
               V L     + +A+        P    + ++    +    ++   F+   K  A +A
Sbjct: 184 KERMVPLSAKAREAVALWLKERARHPSFANSPWLFPAVSASGYLSRQVFARELKGLAGRA 243

Query: 281 GV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           G+     S H +R   A+     GA    +    G   +   + YT   ++ 
Sbjct: 244 GISTAKISPHVLRHAFASHLLQNGADLRAVQQLLGHADISTTQIYTHVLEKR 295


>gi|254520505|ref|ZP_05132561.1| phage integrase [Clostridium sp. 7_2_43FAA]
 gi|226914254|gb|EEH99455.1| phage integrase [Clostridium sp. 7_2_43FAA]
          Length = 390

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 48/365 (13%), Positives = 115/365 (31%), Gaps = 53/365 (14%)

Query: 26  RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG 85
           R   G+ IR    +  T     +  +     K       + +  TL+   + +       
Sbjct: 30  RNTEGKLIR-KQFYGKT-KREVLDKMNDYRDKSSRGLIAKDEKITLEEWYNIWLFQFKAN 87

Query: 86  SLAVNSRISFESYFDQIIR--KSGDFDYRKITT---KHIRSGVESRKHTPSSAIQFLTSM 140
            L  ++   +  ++   I+    G    + +T    ++  + +     TP +      ++
Sbjct: 88  ELKASTIERYNVFYRNYIKGCNIGQVKLKDLTAPIIQNYYNSLIKNGKTPYTVKMLHKAL 147

Query: 141 RVLFKWAVRQEYVAINPCLSVERPK---RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE 197
           +    +A R  Y+ IN C +V  PK   +  +  + +T E+ ++F +   +  + RL F 
Sbjct: 148 KSSLSYAKRINYIGINCCDNVIPPKVINKDDDKFKVFTLEEQKKFMNVIKDH-KYRLMFI 206

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP------------------- 238
             L +G+R  +        +  +  ++K  K+ +   +E+                    
Sbjct: 207 LALGTGIRIGELVALKWDDINFDECTLKVNKSISRSYIEIEGKRKFLLEETTPKTRSSIR 266

Query: 239 -------------------DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK 279
                              D +              F +   + +     S  +      
Sbjct: 267 EVGIPSNILKELINHRKEQDEYKDNYKEIYTDNNYVFTDALGRYILPDTLSKAYLKVLKD 326

Query: 280 AGVNKS-AHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADRIRLGIKNSR 337
             +  +  H +R   AT   + G     +    G  ++   A+ YT      +  I    
Sbjct: 327 NNIPHTRFHSLRHTYATRLFEKGVPLKTVQKLLGHSSIKITADIYTHVIGNEK--ISAVE 384

Query: 338 RISSV 342
           +++ +
Sbjct: 385 KLNDL 389


>gi|254796542|ref|YP_003081378.1| tyrosine recombinase XerD [Neorickettsia risticii str. Illinois]
 gi|254589779|gb|ACT69141.1| tyrosine recombinase XerD [Neorickettsia risticii str. Illinois]
          Length = 301

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 43/265 (16%), Positives = 86/265 (32%), Gaps = 20/265 (7%)

Query: 85  GSLAVNSRISFE---SYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMR 141
            +  +N+  S+          ++K G  D  K       + + +++ + ++  +   + R
Sbjct: 20  RNATLNTISSYRTDLRLLGAFLKKKGLKDASKEDLYGYIADLRAQQLSNATIRRKTATFR 79

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP----RLAFE 197
             F +   ++  + NP  ++E PK+     R  TKE++    +F   G           E
Sbjct: 80  QFFSFLYSEKISSGNPAQTLELPKKTLVLPRYLTKEEVLSLLTFLETGQPATLRLYAILE 139

Query: 198 FLLYSGLRCSDSCRAGVQHLQ----NNIFSIKTQKTGTIITVELPDG----FMKLLAMTP 249
            L  SG+R S+     +  ++         I   K      +             L    
Sbjct: 140 ILYSSGMRVSELINMKISDIRPLLNGQQHIIIVGKGRKERILPFSKKAIQVLKLYLTSYQ 199

Query: 250 IGKETFFINNDK--QKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATA 304
                 F    +  + M+  +     K  A K  ++    S H +R   AT   D G   
Sbjct: 200 SNSPWLFPGAGRKDRPMSRQRLGQLLKELALKCSIDPKRISPHVIRHSFATHLLDNGMDI 259

Query: 305 HELMATYGWKTVDQAETYTKGADRI 329
             +    G   +   + YT  +   
Sbjct: 260 KVVQDLLGHAQITTTQIYTHISQNK 284


>gi|237722683|ref|ZP_04553164.1| mobilizable transposon [Bacteroides sp. 2_2_4]
 gi|229448493|gb|EEO54284.1| mobilizable transposon [Bacteroides sp. 2_2_4]
          Length = 386

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 46/303 (15%), Positives = 100/303 (33%), Gaps = 26/303 (8%)

Query: 39  HESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSA-----HWGSLAVNSRI 93
            ++ F+  Y         +R             +     Y +        +  +      
Sbjct: 88  EDTPFLEYYRK----MVEERHKNPESDGNWGNWRS-CLRYLEIYCDEKTTFKDITPEFIN 142

Query: 94  SFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYV 153
            F+ + + + + +    +++   +  R     +  + +S + +   +R     A  +  +
Sbjct: 143 GFKDFLNNVEKDT----HKRTGPRRERDVF--QGLSQNSKVSYFNKLRACINQAYDERII 196

Query: 154 AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG 213
            +NP   +E  K         T E+++Q  +        + AF F   +GLR SD  +  
Sbjct: 197 PVNPLRGIEGFKAAEVKRDYLTLEEVKQLAATPCRYPILKRAFLFSCLTGLRKSDIQKLT 256

Query: 214 VQHL----QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF 269
              +           K +KTG    +++     K L      ++  F         + + 
Sbjct: 257 WSEVQKFGDYTRIVFKQKKTGGQEYLDISSQAEKYLGERGNPEDLVFTGFTYGAWTSLEL 316

Query: 270 SIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
             W    +  A +NK  + H  R   A +  D GA  + +    G K +   + Y K  D
Sbjct: 317 QRW----SMAANINKNLTFHCGRHTFAVLMLDLGADIYTVSKLLGHKELATTQIYAKVLD 372

Query: 328 RIR 330
           + +
Sbjct: 373 KNK 375


>gi|160889618|ref|ZP_02070621.1| hypothetical protein BACUNI_02044 [Bacteroides uniformis ATCC 8492]
 gi|156860610|gb|EDO54041.1| hypothetical protein BACUNI_02044 [Bacteroides uniformis ATCC 8492]
          Length = 379

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 40/207 (19%), Positives = 77/207 (37%), Gaps = 14/207 (6%)

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVE---RPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
            +L ++R     AV ++Y+ +NP   ++   +PKR        T +++ +        + 
Sbjct: 165 YYLKTLRYCLNRAVSEDYITVNPMNKIKNEDKPKRNRTERDYLTIKELTRLVHTPFYNTL 224

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQ-----NNIFSIKTQKTGTIITVELPDGFMKLLA 246
            R AF F  + GLR  D      + ++     N + SI  +KT   I++ L     + + 
Sbjct: 225 LRKAFLFSCFCGLRHCDIIALRWEDIRYDENGNALLSIIQKKTKEAISLPL---CSEAIK 281

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWF-KAKATKAGVNK--SAHGVRKFSATISADAGAT 303
             P              + +   S         +AG++K  + H  R   AT+    G  
Sbjct: 282 HLPDRGNAPETEKVFAGLVSLGRSNVILHKWVEQAGISKHVTFHTARHTHATMMLTLGVD 341

Query: 304 AHELMATYGWKTVDQAETYTKGADRIR 330
            + +    G   +   + Y K  D  +
Sbjct: 342 LYTVSKLLGHTNIQTTQIYAKLVDESK 368


>gi|301382613|ref|ZP_07231031.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           tomato Max13]
 gi|302063357|ref|ZP_07254898.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           tomato K40]
 gi|302133632|ref|ZP_07259622.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           tomato NCPPB 1108]
 gi|331017919|gb|EGH97975.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 290

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 36/259 (13%), Positives = 92/259 (35%), Gaps = 19/259 (7%)

Query: 85  GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIR---SGVESRKHTPSSAIQFLT 138
             ++ ++  ++     ++    +K+    +  +  +H+R   +    +  +  S  + L+
Sbjct: 7   RQVSPHTLEAYRRDLSKVLAYCQKARLSSWNDLDIQHLRSFTARQHQQGQSSRSLARMLS 66

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRL 194
           ++R  +K+  R+     +P   +  PK +    +    +   Q      E      + + 
Sbjct: 67  AVRGFYKYLNREGLCQHDPANGLSPPKGERRLPKTLDTDRTAQLLDGGVEDDFLAHRDQA 126

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV--------ELPDGFMKLLA 246
             E L  SGLR S+     +  L      ++    G+   V        +  + ++ L A
Sbjct: 127 IMELLYSSGLRLSELTGLNLDQLDLRDGLVQVLGKGSKTRVLPVGSKARQALETWLPLRA 186

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAK-ATKAGVNKSAHGVRKFSATISADAGATAH 305
           +T    +  F++   +++      +  K     + G N   H +R   A+   ++     
Sbjct: 187 LTNPQDDAVFVSQQGKRLGPRAVQLRIKTAGERELGQNLHPHMLRHSFASHLLESSQDLR 246

Query: 306 ELMATYGWKTVDQAETYTK 324
            +    G   +   + YT 
Sbjct: 247 AVQELLGHADIKTTQIYTH 265


>gi|285019335|ref|YP_003377046.1| tyrosine recombinase [Xanthomonas albilineans GPE PC73]
 gi|283474553|emb|CBA17054.1| probable tyrosine recombinase protein [Xanthomonas albilineans]
          Length = 296

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 37/257 (14%), Positives = 81/257 (31%), Gaps = 17/257 (6%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGD------FDYRKITTKHIRSGVESRKHTPSSAIQFLT 138
             ++ ++  ++      +   + D              +   +    R  +P S  + L+
Sbjct: 19  RRMSAHTLDAYRRDLAALTTWAADNLLGEPAALGAEQLRQFIAAEHRRGLSPKSLQRRLS 78

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLA 195
           + R  + W ++  ++  +P  ++  PK   +  +    ++  +          G + R  
Sbjct: 79  ACRSFYVWLLKHGHIEASPAAALRAPKAPRKLPQVLDADEAVRLVEVPTDVPLGLRDRAL 138

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMT-----P 249
            E    SGLR S+ C    + L      +    K G    V +     K L+        
Sbjct: 139 LELFYSSGLRLSELCALRWRDLDAASGLVSVHGKGGKQRLVPIGSHARKALSEWREEHCA 198

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHEL 307
                 F       + A    I  K  A + G+  +   H +R   A+   ++      +
Sbjct: 199 DAAAPVFPGRGGVPIGARAVQIRIKQLAARQGLFKHVHPHMLRHSFASHILESSGDLRGV 258

Query: 308 MATYGWKTVDQAETYTK 324
               G   +   + YT 
Sbjct: 259 QELLGHADIATTQIYTH 275


>gi|84517223|ref|ZP_01004578.1| Phage integrase [Loktanella vestfoldensis SKA53]
 gi|84508898|gb|EAQ05360.1| Phage integrase [Loktanella vestfoldensis SKA53]
          Length = 401

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 66/355 (18%), Positives = 122/355 (34%), Gaps = 28/355 (7%)

Query: 6   RLPPFVTKERTRHGKIIYYFR----KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYI 61
           R    +  E    G   YY R    +   R I+L    + T   A              +
Sbjct: 28  RRAKGLALEVRISGGRTYYLRYSDDRSKTRYIKLADAGDVTLPQARTLCERMRNKIAMGV 87

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFES-------YFDQIIRKSGDFDYRKI 114
           +  +++    K L+  +     W S    S+ +  S           +I   G     +I
Sbjct: 88  DPLKERAG--KKLVPTFEA-FAWNSYMPFSQANKRSWKTDETLIRTHLIPAFGKKHLDEI 144

Query: 115 TTKHIRSGVE---SRKHTPSSAIQFLTSMRVLFKWAVRQEY----VAINPCLSVERPKRK 167
           TT+ + S  +        P S  + L  +R +F  A  +++    V  NP   V   K  
Sbjct: 145 TTEDVLSMQQAGLKAGAAPGSVNRRLILLRYMFNTAW-RDWKIAGVKENPTHGVRLLKEN 203

Query: 168 TEGIRPWTKEDMQQFKSFW--SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFS 223
            +  R    ++M +  +    S+ +  +    FLL +G R ++   A  Q +      + 
Sbjct: 204 NKKERYVRADEMARLYAEICSSQNTMLKHVVAFLLLTGARRNEVLHATWQDINLTTGKWR 263

Query: 224 IKTQKTGTIITVELPDGFMKLLA-MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
           I   K+G    + L DG M +L  M  + +  +   N K           +     +AG+
Sbjct: 264 IPDTKSGYARHLPLNDGAMAVLHQMQGVSRSQYIFGNPKTGKPYVHIYYAWDTARRRAGL 323

Query: 283 -NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
            +   H +R   A++  + G + +E+    G   +   + Y        L   N 
Sbjct: 324 PDVRMHDLRHTFASLLINNGRSIYEVQKLLGHTQIKTTQRYAHLTQETLLDASNI 378


>gi|313887245|ref|ZP_07820939.1| putative ribosomal subunit interface protein [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|312923298|gb|EFR34113.1| putative ribosomal subunit interface protein [Porphyromonas
           asaccharolytica PR426713P-I]
          Length = 413

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 49/303 (16%), Positives = 107/303 (35%), Gaps = 28/303 (9%)

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-----QIIRKSGDFDYRKITTKHIRSG 122
             TL+  I   R      + +  +  ++           +   S ++         +R+ 
Sbjct: 17  EQTLEAFIEYLRLE---RNASPLTLTTYRPAITSYMECALELASDEWQPSDADRDLVRNW 73

Query: 123 VESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
           +  +     T ++  + L++++  +K+   +  V  NP   +  PKR+       T+  +
Sbjct: 74  IMQQMDDELTSTTVNKNLSAVKSFYKYLQLRGVVDNNPTRYLRGPKREHTLPSFLTQAQI 133

Query: 180 QQFKSFWS------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TI 232
           ++               + RL  E +  +GLR ++      Q +     S++    G   
Sbjct: 134 EEALETIPTDPEDFLAVRNRLIIETIYQTGLRRAEVASLETQQVDLASMSLRVVGKGRKE 193

Query: 233 ITVELPDGFMKLLAMTPIGKE-------TFFINNDKQKMN-ATQFSIWFKAKATKAGVNK 284
             V   +   + +      KE        FF+    + ++ A  + +  KA     G+ +
Sbjct: 194 RIVPFGEALKEQMKAYLTLKERKVGQSRYFFVTLKCRPLSGADVYQVVHKALDVVPGLPR 253

Query: 285 S-AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSRRISSV 342
             AH +R   AT   +AGA    +    G   ++    YT  + ++++       R  S 
Sbjct: 254 RGAHTLRHSFATEMLNAGAPITSIKELLGHSNLETTTRYTHTSFEQLKQLYHAHPRAQSQ 313

Query: 343 VDS 345
           V S
Sbjct: 314 VPS 316


>gi|322435641|ref|YP_004217853.1| integrase family protein [Acidobacterium sp. MP5ACTX9]
 gi|321163368|gb|ADW69073.1| integrase family protein [Acidobacterium sp. MP5ACTX9]
          Length = 352

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 57/338 (16%), Positives = 114/338 (33%), Gaps = 22/338 (6%)

Query: 4   SLRLPPFV--TKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYI 61
           + + P  V    ER     + +   K    R R     +   I  Y    T      +  
Sbjct: 3   TRKAPAKVRGVYEREPGSGVWWICYKQGTVRKREKVGRKGDAIELYRQRKTELRAGAKLA 62

Query: 62  NSPRKKPTTLKWLISEYRK-SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
            + R K  T   L  E    SA +    + + +           + G      +T + I 
Sbjct: 63  PNLRHKGVTFGVLAEEALAWSAEFHPKDIKTVMGRMKMLTG---EFGLVAASDLTPQMID 119

Query: 121 SGVESRKHT------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
           S +   +        P++  ++   + ++++  +R   V  NP   V         +R  
Sbjct: 120 SWLTDYRTKGKNVLAPATKNRYRALISLVYRQGMRNGKVKANPARLVAARAENNARVRYL 179

Query: 175 TKEDMQQFKSFWSEGSQPRL-AFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGT 231
             ++ +  ++    G    + A +  L SG+R S+      +          +   K G+
Sbjct: 180 LPDEEKALRTAMENGRLCYIPALDVALNSGMRLSEQFSLTWEAIDFGRKEIVLDETKNGS 239

Query: 232 IITVELPD----GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSA 286
              + +       F  L+       +  F +   + +N  +   WF+A A +AG+ + + 
Sbjct: 240 SRHIPMNSTCEAAFRSLVVAGQKPADRVFSSRHGKAINTPR--KWFEASAEEAGITDLTW 297

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           H +R    +  A AG     +    G KT+  A  Y+ 
Sbjct: 298 HSLRHTFCSRLAMAGVDIRTIAQLAGHKTLAMAMRYSH 335


>gi|153002474|ref|YP_001368155.1| tyrosine recombinase XerC [Shewanella baltica OS185]
 gi|151367092|gb|ABS10092.1| tyrosine recombinase XerC [Shewanella baltica OS185]
          Length = 306

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 33/271 (12%), Positives = 88/271 (32%), Gaps = 21/271 (7%)

Query: 72  KWL--ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-FDYRKITTKHIRS---GVES 125
           +WL     Y  +     L+ ++  ++    ++      D      ++ +H +     +  
Sbjct: 14  QWLQTFERYLSTER--QLSAHTVRNYLYELNRGSDLLPDGVHLLNVSREHWQQVLSKLHR 71

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +  +P S    L++++   ++ +R+  + +NP   +  PK+     +    + +      
Sbjct: 72  KGLSPRSLSLCLSAVKQWGEFLLREGVIELNPAKGLSAPKQAKPLPKNIDVDAISHLLDI 131

Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT--------IIT 234
                   + +   E    SGLR ++     +  +Q ++  ++    G          + 
Sbjct: 132 EGTDPLSLRDKAMMELFYSSGLRLAELAALNLSSVQYDLKEVRVLGKGNKERIVPVGRLA 191

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSAHGVRKF 292
           +     ++      P      F+    ++++                  V    H +R  
Sbjct: 192 IAALQNWLNCRKQIPCEDNALFVTEKGKRLSHRSIQARMAKWGQEQALSVRVHPHKLRHS 251

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYT 323
            AT   +A A    +    G   +   + YT
Sbjct: 252 FATHMLEASADLRAVQELLGHANLATTQIYT 282


>gi|319764396|ref|YP_004128333.1| tyrosine recombinase xerc [Alicycliphilus denitrificans BC]
 gi|330826617|ref|YP_004389920.1| tyrosine recombinase XerC [Alicycliphilus denitrificans K601]
 gi|317118957|gb|ADV01446.1| tyrosine recombinase XerC [Alicycliphilus denitrificans BC]
 gi|329311989|gb|AEB86404.1| tyrosine recombinase XerC [Alicycliphilus denitrificans K601]
          Length = 320

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 40/304 (13%), Positives = 86/304 (28%), Gaps = 41/304 (13%)

Query: 57  KREYINSPRKKPTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKIT 115
           + E    P+  P  L     +Y +       LA  +   +     ++   + D     + 
Sbjct: 2   QPETPQPPQLPPEAL-----QYLEHVRVEKRLAARTLTLYTLDLQRLAAFAADAGLPLLR 56

Query: 116 -----TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170
                 +   + + +   +       L+  R  + WA RQ  V  NP   V  PK     
Sbjct: 57  LTGAHVRRFVAQMHAAGRSGRGIALILSGWRGFYAWAARQGLVPHNPVQDVRAPKAPKPL 116

Query: 171 IRPWTKEDMQQFKSFWSEG------SQPRLAFEFLLYSGLRCSDSCRAGV------QHLQ 218
            +    ++  +       G      ++     E L   GLR  +     V          
Sbjct: 117 PKALPVDEAVRLAEHEESGADPWLEARDAAIVELLYGCGLRVGELVGLDVAPSPAAHQQG 176

Query: 219 NNIFSIKT------QKTGTIITVELPDGFMKLLA----------MTPIGKETFFINNDKQ 262
                ++        K     +V +     + L                    F+     
Sbjct: 177 RGWIDLQAGEAHVFGKGAKRRSVPVGRAAAEALRGWLAVRAQPFGGAAADAALFVGRRGA 236

Query: 263 KMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
           +++A    +  + ++ +AG+      H +R   A+    +      +    G   +   +
Sbjct: 237 RLSAQSVWLRLRQRSQRAGLTTPVHPHMLRHSFASHLLQSSGDLRAVQELLGHANITTTQ 296

Query: 321 TYTK 324
            YT+
Sbjct: 297 VYTR 300


>gi|294787035|ref|ZP_06752289.1| site-specific recombinase, phage integrase family [Parascardovia
           denticolens F0305]
 gi|315226683|ref|ZP_07868471.1| tyrosine recombinase XerC [Parascardovia denticolens DSM 10105]
 gi|294485868|gb|EFG33502.1| site-specific recombinase, phage integrase family [Parascardovia
           denticolens F0305]
 gi|315120815|gb|EFT83947.1| tyrosine recombinase XerC [Parascardovia denticolens DSM 10105]
          Length = 334

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 54/315 (17%), Positives = 102/315 (32%), Gaps = 61/315 (19%)

Query: 71  LKWLISEY-RKSAHWGSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGV--E 124
              L+ +Y         L+  S  ++ES  D     +   G  D + I T ++R  +  E
Sbjct: 3   FAELLHDYCLFLKDSKGLSPQSLKAYESDVDQCLHFLCLHGRTDIQSINTDYLRMWMSYE 62

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK-------E 177
           SRK   SS  + + ++R  F +    + +  NP   +  PK         T+       +
Sbjct: 63  SRKVAKSSLARKIVAVRGFFAYLYTHKLIPSNPARPLGTPKLPKTLPAVLTQKQAVRLMD 122

Query: 178 DMQQFKSFWSEGSQPR--------------------------LAFEFLLYSGLRCSDSCR 211
             ++      +G   R                             E L  +G+R ++   
Sbjct: 123 QAEEVCERDRDGQADRAETGKAKAELSKAEAEKKTLLDMRDDAIMEVLYATGIRVAELVS 182

Query: 212 AGVQHLQNNIFSIKTQKTGTIITV-----ELPDGFMKLLA----------------MTPI 250
             V  +     ++K    G    V        +   + +                  +  
Sbjct: 183 LDVDDIDFTTRTVKVTGKGNKQRVVPFGKPAAEALDRWIRQGRDGLLDQAAPSAAQGSAA 242

Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMA 309
            +   F+ +  +++N  Q        A +AGV + S H +R  +AT   D GA   E+  
Sbjct: 243 DRSAVFVGSRGKRINQRQVREVVHRLAREAGVPDISPHALRHSAATHLLDGGADLREVQE 302

Query: 310 TYGWKTVDQAETYTK 324
             G  ++   + YT 
Sbjct: 303 MLGHSSLQTTQRYTH 317


>gi|21282864|ref|NP_645952.1| hypothetical protein MW1135 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49486091|ref|YP_043312.1| putative integrase/recombinase [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|297208102|ref|ZP_06924533.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|300912183|ref|ZP_07129626.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|34222912|sp|Q8NWZ8|XERC_STAAW RecName: Full=Tyrosine recombinase xerC
 gi|81649416|sp|Q6G9W1|XERC_STAAS RecName: Full=Tyrosine recombinase xerC
 gi|21204303|dbj|BAB95000.1| xerC [Staphylococcus aureus subsp. aureus MW2]
 gi|49244534|emb|CAG42963.1| putative integrase/recombinase [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|296887345|gb|EFH26247.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|300886429|gb|EFK81631.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           TCH70]
          Length = 298

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 37/266 (13%), Positives = 94/266 (35%), Gaps = 22/266 (8%)

Query: 85  GSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVE---SRKHTPSSAIQFLTS 139
            + + ++  S++    Q  +  +      +    +  R+ +    S     +S  + +++
Sbjct: 16  RNFSEHTLKSYQDDLIQFNQFLEQEHLQLKTFEYRDARNYLSYLYSNHLKRTSVSRKIST 75

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLA 195
           +R  +++ +  +   INP + +  PK++    + + +E+M+       E +    + R+ 
Sbjct: 76  LRTFYEYWMTLDENIINPFVQLVHPKKEKYLPQFFYEEEMEALFKTVEEDTSKSLRDRVI 135

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVE--------LPDGFMKLL 245
            E L  +G+R S+      Q +    N  ++   K      V         + +      
Sbjct: 136 LELLYATGIRVSELVNIKKQDIDFYANGVTV-LGKGSKERFVPFGAYCRQSIENYLEHFK 194

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATK-AGV-NKSAHGVRKFSATISADAGAT 303
            +     +   +N   + +              + AGV     H +R   AT   + GA 
Sbjct: 195 PIQSCNHDFLIVNMKGEAITERGVRYVLNDIVKRTAGVSEIHPHKLRHTFATHLLNQGAD 254

Query: 304 AHELMATYGWKTVDQAETYTKGADRI 329
              + +  G   +     YT  +++ 
Sbjct: 255 LRTVQSLLGHVNLSTTGKYTHVSNQQ 280


>gi|308125862|ref|ZP_07663544.1| tyrosine recombinase XerC [Vibrio parahaemolyticus K5030]
 gi|308111049|gb|EFO48589.1| tyrosine recombinase XerC [Vibrio parahaemolyticus K5030]
          Length = 266

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 37/228 (16%), Positives = 79/228 (34%), Gaps = 19/228 (8%)

Query: 111 YRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170
            R++  K +R G+       SS    L+S+R  F + + +  ++ NP   V  P++K   
Sbjct: 21  VRQLAGKGMREGM-----KASSLATRLSSLRSFFDFLILRGEMSANPAKGVSAPRKKRPL 75

Query: 171 IRPWTKEDMQQFKSF---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT- 226
            +    +++ Q            + R   E +  +GLR ++     V+ +Q     ++  
Sbjct: 76  PKNLDVDEVNQLLEVNEDDPLAIRDRAMMELMYGAGLRLAELVSVDVRDVQLRSGELRVI 135

Query: 227 QKTGTIITVE--------LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKAT 278
            K      V         +         +   G+   F++    +++             
Sbjct: 136 GKGDKERKVPFSGMATEWVGKWLRVRGDLAAPGEPALFVSKLGTRISHRSVQKRMAEWGQ 195

Query: 279 KAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           K  V  + S H +R   AT   ++      +    G + +   + YT 
Sbjct: 196 KQSVASHISPHKLRHSFATHMLESSNNLRAVQELLGHENISTTQIYTH 243


>gi|221642264|ref|YP_002533351.1| integrase:recombinase [Bacillus cereus Q1]
 gi|229052846|ref|ZP_04195288.1| Site-specific recombinase, phage integrase [Bacillus cereus AH676]
 gi|229199805|ref|ZP_04326410.1| Site-specific recombinase, phage integrase [Bacillus cereus m1293]
 gi|221243199|gb|ACM15908.1| integrase:recombinase [Bacillus cereus Q1]
 gi|228583670|gb|EEK41883.1| Site-specific recombinase, phage integrase [Bacillus cereus m1293]
 gi|228721504|gb|EEL73006.1| Site-specific recombinase, phage integrase [Bacillus cereus AH676]
          Length = 322

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 43/284 (15%), Positives = 92/284 (32%), Gaps = 28/284 (9%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES---RKHTPSSAIQFLTSMRV 142
                +   +   F   +R+        IT  H++  +     R+  P++    +++++ 
Sbjct: 41  GFRKRTIDDYSKLFRYFMRELNIEKVEIITAAHVQMYINKLLNRELAPATVNIRISALKS 100

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLAFEF 198
           +FK    Q Y+  NP +   + +     I       +++           G +   A   
Sbjct: 101 VFKRLNEQGYIKSNPAVDFVKLRTDEAPIFTLNHNQIKRIFRVVDKTTYAGYRDYCAMLL 160

Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQ----KTGTIITVELPDGFMKLLAMTPIGKET 254
           +L+ GLR ++  +     +  +  +I       K      V +     + L M       
Sbjct: 161 MLHCGLRVNEVNQLEANDIDFDNLTIMLAGAKNKNRKTRAVPMTKKVAEELRMLIDESRE 220

Query: 255 FF-------INNDKQKMNATQFSIWFKAKATKAGVNK----SAHGVRKFSATISADAGAT 303
           +F       +  + + ++            T AG+ K    S H +R   AT     G +
Sbjct: 221 YFEGVTNVFLTQEGKVIDNDLLRKRMYRYGTLAGLLKECRPSPHSLRHTFATNFLRNGGS 280

Query: 304 AHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
            + LM   G   +     Y       RL  +  +     V + +
Sbjct: 281 VNALMRIMGHADITTTMRYV------RLNDEAVKEQYEKVAAKN 318


>gi|113968738|ref|YP_732531.1| tyrosine recombinase XerC [Shewanella sp. MR-4]
 gi|117918850|ref|YP_868042.1| tyrosine recombinase XerC [Shewanella sp. ANA-3]
 gi|123130813|sp|Q0HN93|XERC_SHESM RecName: Full=Tyrosine recombinase xerC
 gi|171460757|sp|A0KS67|XERC_SHESA RecName: Full=Tyrosine recombinase xerC
 gi|113883422|gb|ABI37474.1| tyrosine recombinase XerC [Shewanella sp. MR-4]
 gi|117611182|gb|ABK46636.1| tyrosine recombinase XerC [Shewanella sp. ANA-3]
          Length = 299

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 32/274 (11%), Positives = 90/274 (32%), Gaps = 20/274 (7%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-FDYRKITTKHIR---SGVESRKHTPS 131
             Y +S     L+ ++  ++     +      +  D   +  +H +   + +  +  +P 
Sbjct: 13  ETYMQSER--QLSAHTVRNYMYELQRGSELLPEGVDLLNVGREHWQQVLAKLHRKGLSPR 70

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR---PWTKEDMQQFKSFWSE 188
           S   +L++++   ++ +R   + +NP   +  PK+     +     +   +   +     
Sbjct: 71  SLSLWLSAIKQWGEFLLRSGVIELNPAKGLSAPKQAKPLPKNIDVDSISHLLAIEGNDPL 130

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM 247
             + +   E    SGLR ++     +  +Q +   ++   K      V +    ++ ++ 
Sbjct: 131 TLRDKAIMELFYSSGLRLAELAALDLSSVQYDQHEVRVLGKGNKERIVPVGRYAIEAISA 190

Query: 248 T-------PIGKETFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSAHGVRKFSATISA 298
                          F+    ++++                  +    H +R   AT   
Sbjct: 191 WLKCRKQISCEDNALFVTEKGKRLSHRSIQARMSKWGQEQALSMRVHPHKLRHSFATHML 250

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           ++ A    +    G + +   + YT   D   L 
Sbjct: 251 ESSADLRAVQELLGHENLSTTQIYT-SLDFQHLA 283


>gi|153840548|ref|ZP_01993215.1| tyrosine recombinase [Vibrio parahaemolyticus AQ3810]
 gi|149745789|gb|EDM56919.1| tyrosine recombinase [Vibrio parahaemolyticus AQ3810]
          Length = 362

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 28/170 (16%), Positives = 57/170 (33%), Gaps = 18/170 (10%)

Query: 175 TKEDMQQFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKT 229
           ++E +               + +   E L  +GLR ++     ++++      ++ T K 
Sbjct: 178 SEEQVDALLDAPDPNDPVELRDKAMLELLYATGLRVTELVSLTMENISLRQGVVRVTGKG 237

Query: 230 GTIITVELPDGFMKLLAMTP----------IGKETFFINNDKQKMNATQFSIWFKAKATK 279
           G    V + +  +  +                 +  F +   ++M    F    K  A  
Sbjct: 238 GKERLVPMGENAIDWIETFIQQGRPALLGETSSDVVFPSKRARQMTRQTFWHRIKYYAVI 297

Query: 280 AGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           AG++    S H +R   AT   + GA    +    G   +   + YT  A
Sbjct: 298 AGIDTDQLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVA 347


>gi|83720176|ref|YP_440728.1| site-specific tyrosine recombinase XerC [Burkholderia thailandensis
           E264]
 gi|167617501|ref|ZP_02386132.1| site-specific tyrosine recombinase XerC [Burkholderia thailandensis
           Bt4]
 gi|257140623|ref|ZP_05588885.1| site-specific tyrosine recombinase XerC [Burkholderia thailandensis
           E264]
 gi|83654001|gb|ABC38064.1| tyrosine recombinase XerC [Burkholderia thailandensis E264]
          Length = 306

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 42/280 (15%), Positives = 88/280 (31%), Gaps = 32/280 (11%)

Query: 75  ISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTP 130
           I++Y  +  H   L+ ++  ++     ++ + +       +T   +R  V        + 
Sbjct: 6   IADYLSNLRHVRKLSDHTLRAYAHELGELRKLANGRPLESLTAVDMRGAVARAHAGGLSA 65

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
            S    L++ R  ++W  +   +  NP  +V  PKR     +  + +D        + G+
Sbjct: 66  RSISHRLSAWRAFYRWFSQHVEMNANPVAAVRAPKRAKTLPKALSVDDAAALMDAPTAGT 125

Query: 191 ----QPRLAFEFLLYSGLRCSDSCRA-------------GVQHLQNNIFSIKTQKTGTII 233
               +     E    SGLR ++                 G   L     +++  K     
Sbjct: 126 AEHLRDHAILELFYSSGLRLAELIGLDVEYTKDGDYRSEGWLDLAEAEVTVR-GKGEKER 184

Query: 234 TVELPDGFMKLLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284
            V +    +  L                  F++    +M+        K  A  AG+   
Sbjct: 185 KVPVGRKAIDALNAWLAVRGEFVKRDARPLFLSVRGNRMSPGVVRERVKRAALAAGIPAN 244

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
              H +R   AT    +      +    G  ++   + YT
Sbjct: 245 VHPHVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYT 284


>gi|219856083|ref|YP_002473205.1| hypothetical protein CKR_2740 [Clostridium kluyveri NBRC 12016]
 gi|219569807|dbj|BAH07791.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 293

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 44/272 (16%), Positives = 96/272 (35%), Gaps = 19/272 (6%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQ----IIRKSGDFDY-RKITTKHIRSGVE- 124
           LK  +++Y+K       +  +   + ++  +    +I K     Y + IT  ++   ++ 
Sbjct: 10  LKAAVNQYKKYLINTEKSKETITGYSNHLKRMESYLIEKFNYPPYLQDITLTNLEEYLDS 69

Query: 125 --SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
             +R    +S  +    +R  + +  R+E V  N  L++E  K K +     TK ++   
Sbjct: 70  QLARGLAQASRSKSYYIIRSFYNYCCRKELVEKNIALNLEPIKVKRKERTYLTKNEV-IV 128

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDG 240
                E    +     + ++G+R S+     ++    +N +  I   K      + + D 
Sbjct: 129 LVQKMENELIKTIVMAIYHTGMRISECTNLKIKSVDFKNKVIHIIGGKGNKDRDIPISDT 188

Query: 241 FMKLL------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292
             K+L          +    FF      +++    +        + G  K  SAH +R  
Sbjct: 189 LNKILTKYIKNERLEVNSNYFFATKASGRISPQHINRQINETVKRLGWEKHVSAHILRHS 248

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324
            A+          ++    G   +     YT 
Sbjct: 249 FASKLIQQEVNLVKIQKLLGHSDLRVTSIYTH 280


>gi|153955710|ref|YP_001396475.1| tyrosine recombinase [Clostridium kluyveri DSM 555]
 gi|146348568|gb|EDK35104.1| Predicted tyrosine recombinase [Clostridium kluyveri DSM 555]
          Length = 287

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 44/272 (16%), Positives = 96/272 (35%), Gaps = 19/272 (6%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQ----IIRKSGDFDY-RKITTKHIRSGVE- 124
           LK  +++Y+K       +  +   + ++  +    +I K     Y + IT  ++   ++ 
Sbjct: 4   LKAAVNQYKKYLINTEKSKETITGYSNHLKRMESYLIEKFNYPPYLQDITLTNLEEYLDS 63

Query: 125 --SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
             +R    +S  +    +R  + +  R+E V  N  L++E  K K +     TK ++   
Sbjct: 64  QLARGLAQASRSKSYYIIRSFYNYCCRKELVEKNIALNLEPIKVKRKERTYLTKNEV-IV 122

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDG 240
                E    +     + ++G+R S+     ++    +N +  I   K      + + D 
Sbjct: 123 LVQKMENELIKTIVMAIYHTGMRISECTNLKIKSVDFKNKVIHIIGGKGNKDRDIPISDT 182

Query: 241 FMKLL------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292
             K+L          +    FF      +++    +        + G  K  SAH +R  
Sbjct: 183 LNKILTKYIKNERLEVNSNYFFATKASGRISPQHINRQINETVKRLGWEKHVSAHILRHS 242

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324
            A+          ++    G   +     YT 
Sbjct: 243 FASKLIQQEVNLVKIQKLLGHSDLRVTSIYTH 274


>gi|326797736|ref|YP_004315555.1| integrase family protein [Sphingobacterium sp. 21]
 gi|326548500|gb|ADZ76885.1| integrase family protein [Sphingobacterium sp. 21]
          Length = 360

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 41/251 (16%), Positives = 82/251 (32%), Gaps = 10/251 (3%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLF 144
            + + ++  ++   F Q++    D     +    +R+ +    +T   +   L S     
Sbjct: 98  KAYSPSTIRTYMVEFAQLLYILKDVPIDSLGYDRLRAYILYCINTLKISESQLHSRLNAI 157

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGL 204
           K+   Q     +    + RPK+ +   +  +++++++         +  L  +     GL
Sbjct: 158 KFYFEQVLHKPDFFAEIPRPKKPSTLPKVLSQKEVKRIFDAV-RNRKHLLMLQLCYGMGL 216

Query: 205 RCSDSCRAGVQHLQNNIFS--IKTQKTGTIITVELP----DGFMKLLAMTPIGKETFFIN 258
           R S+     V  + +      I+  K      V LP    D   +        K   F  
Sbjct: 217 RVSEVVNLKVSDIDSGRLQVLIEAGKGKKDRYVPLPSAVLDLLREYYKAYHP-KTYLFEG 275

Query: 259 NDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTV 316
               + +       FK     A VNK    HG+R   AT   + G     +    G   +
Sbjct: 276 QYGGRYSVRSVQAVFKNAMKAAKVNKPIGIHGLRHSYATHLLEYGTDMLFIQQLLGHNDI 335

Query: 317 DQAETYTKGAD 327
                Y K  +
Sbjct: 336 KTTMLYAKVGN 346


>gi|315644272|ref|ZP_07897442.1| integrase family protein [Paenibacillus vortex V453]
 gi|315280647|gb|EFU43936.1| integrase family protein [Paenibacillus vortex V453]
          Length = 303

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 48/274 (17%), Positives = 98/274 (35%), Gaps = 19/274 (6%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKH 128
            + ++ E+ +      +A  +   +    + + ++  D    Y K+    +   +     
Sbjct: 15  WEDILEEFLRFKLLNGIAKTTHKDYIRTVNLLFKRFPDAWGSYYKLEEA-VIDHLNQEGI 73

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS- 187
            P++    LT +R  FKW V + ++  NP   +++ K  +  I   + E +Q+       
Sbjct: 74  APATFNSRLTYLRTFFKWCVEEGHLKKNPLTKIKKRKEGSR-IVAISIETLQELIRVPDQ 132

Query: 188 ---EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELP---- 238
               G +      F L +G+R S++           +    I      T ++  L     
Sbjct: 133 STFVGMRDYTLIIFTLDTGIRPSEALALQPNDFNLISGWVRIPDGAAKTRVSRTLNISPV 192

Query: 239 --DGFMKLLAMTPIG---KETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFS 293
             D   +L+ M P     K   F       +N   +    +  + + GV+ + + +R   
Sbjct: 193 TVDALKRLIDMRPRSWANKVPVFSTETGNVLNRHTWGDRLERHSKQVGVHITPYALRHAF 252

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           A      GA+A  L  T G   +   + Y   AD
Sbjct: 253 ALEFLRNGASAFSLQKTLGHVDISMTKRYVALAD 286


>gi|46201486|ref|ZP_00208119.1| COG4974: Site-specific recombinase XerD [Magnetospirillum
           magnetotacticum MS-1]
          Length = 305

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 37/268 (13%), Positives = 78/268 (29%), Gaps = 25/268 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKS---GDFDYRKITT--KHIRSGVESRKHTPSSAIQFLTS 139
              + N+  ++              G               +          +  + L+ 
Sbjct: 20  RGASPNTLDAYGRDLADFAEFLDGRGQSPLNAEGRSVAAYIARQAEIGMAARTQARRLSC 79

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-----GSQPRL 194
           ++  + +A  +     +P  +++ P+      +   KE++              G     
Sbjct: 80  LKQFYGFAFAERLRPDDPTANIDAPRLGRPLPKYLRKEEVTALLDAARALEGRDGILMTA 139

Query: 195 AFEFLLYSGLRCSDSCRAGVQHL-QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE 253
             E L  +GLR S+     +  + ++    +   K      V L D     L      +E
Sbjct: 140 LMETLYATGLRVSELVSLPLSAVARDPNVLVVRGKGSKERMVPLSDPARAALIAWKAERE 199

Query: 254 T---------FFINNDKQ--KMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISAD 299
           T         +   +  +   +  + F+      A  AG++    S H +R   A+    
Sbjct: 200 TMVPKSRPSRWLFPSSGRLGHLTRSGFAKMLARAAVLAGLDPFKVSPHVLRHSFASHLLA 259

Query: 300 AGATAHELMATYGWKTVDQAETYTKGAD 327
            GA    +    G   +   E YT   D
Sbjct: 260 GGADLRSVQEMLGHADIATTEIYTHLID 287


>gi|301308338|ref|ZP_07214292.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           20_3]
 gi|300833808|gb|EFK64424.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           20_3]
          Length = 380

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 51/249 (20%), Positives = 91/249 (36%), Gaps = 35/249 (14%)

Query: 108 DFDYRKITTKHIRSGVESRKHT----------PSSAIQFLTSMRVLFKWAVRQEYVAINP 157
           D     +  +     ++  + +          P +A  + T++R     AVR+  +A NP
Sbjct: 130 DVRLCDVDKQFYLDYIDWLRSSCKTAWGKPVSPKTAHSYYTTLRTALNEAVRENLIASNP 189

Query: 158 ------CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCR 211
                    ++ P+ K +     T E++++  +      Q R A+ F  + GLR SD  +
Sbjct: 190 WYRLEMTEKIKVPESKRD---FLTIEEIKRMMATPFFNEQVRQAYLFSCFCGLRISDIRK 246

Query: 212 AGVQHLQNNIFSIKTQ----KTGTIITVELPDGFMKLL----AMTPIGKETFFINNDKQK 263
              + L  +    +      KT   + + L    +K L      TP G            
Sbjct: 247 LRWRDLSMSGGQWRASVVMTKTIHPVYIPLSSQAVKWLPERGDCTPDG------LVFGGL 300

Query: 264 MNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
            N     +  K  A KAGV K  + H  R   A +    GA  + +    G ++V   + 
Sbjct: 301 PNEGNLCVNLKNWAEKAGVKKNVTFHTARHSCAVLLLTLGADIYTVSKILGHRSVRSTQV 360

Query: 322 YTKGADRIR 330
           Y K  D+ +
Sbjct: 361 YAKIVDKKK 369


>gi|227513195|ref|ZP_03943244.1| phage integrase family site specific recombinase [Lactobacillus
           buchneri ATCC 11577]
 gi|227083576|gb|EEI18888.1| phage integrase family site specific recombinase [Lactobacillus
           buchneri ATCC 11577]
          Length = 385

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 47/356 (13%), Positives = 109/356 (30%), Gaps = 47/356 (13%)

Query: 15  RTRHGKIIYYFRKG--HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           R +     Y F  G  +G+R R+      T   A  +               +     ++
Sbjct: 7   RKKGNNWYYAFDTGTVNGKRSRIERYGGKTKKQAEATLRQALQKYENDGAVVKLTNMNVQ 66

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
                + ++     L  N++I++ +  +  II K G+F  R I    +++ V     T  
Sbjct: 67  QYFMYWYENYVQRELKPNTQINYLNIINKYIIPKIGNFRIRSIGPAALQNLVNDLGET-K 125

Query: 132 SAIQFLTSMRVLFKWAVRQ-----EYVAINPCLSVERPK------RKTEGIRPWTKEDMQ 180
            A   +  + ++ K   ++     + +  +P   +  PK         + ++  T    +
Sbjct: 126 LAKHTVQIIVMVIKEGFKKAVYPYQLIKEDPARYIIMPKYHDDERITRKKLKIITMNQYE 185

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-----------------NNIFS 223
           Q  S     +   +  +    +G+R  + C     ++                       
Sbjct: 186 QILSITPPSNPFYIPLQIAFGTGMRRGEVCGLTWANVDLNGHTVEVKQAMMQEPKGKFSI 245

Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPI--------------GKETFFINNDKQKMNATQF 269
           +  + T +  T+ + +  + LL                            +   +     
Sbjct: 246 VTPKTTSSYRTISIGESLVDLLKQHKKHQIEERLRYGQYYHESNFVCTKENGSPVTPNTI 305

Query: 270 SIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
                    + G   + H +R   AT+  + GA   ++ A  G   +    +TY+ 
Sbjct: 306 KYQCDRIQKELGFPFNFHSLRHTHATMLLENGANIKDIQARLGHSRIATTMDTYSH 361


>gi|326789890|ref|YP_004307711.1| integrase family protein [Clostridium lentocellum DSM 5427]
 gi|326540654|gb|ADZ82513.1| integrase family protein [Clostridium lentocellum DSM 5427]
          Length = 350

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 48/294 (16%), Positives = 111/294 (37%), Gaps = 9/294 (3%)

Query: 48  MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG 107
             A+       E       K   LK +   +  +  + SL+ +++ S    F+++   + 
Sbjct: 55  TDAIAALAKYNENPYDISTKKIKLKDIYERWCNTTDFISLSDSTKKSHALAFNKL-ENAH 113

Query: 108 DFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167
           +  + K+ T  ++  ++    TP+  +Q    +  L+ +A + + V  N    ++     
Sbjct: 114 NMPFSKLNTNTLQILIDETGSTPTVKLQIKKLLGNLYLYAEKYDIVTKNYSKFIDVGDTS 173

Query: 168 TE-GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226
           ++   R +T E++++  +  +E         F+LY+G R S+     ++++     ++  
Sbjct: 174 SKIERRIYTHEEIEKLWNNLAENKWIDSIL-FMLYTGFRVSEMLELKIENIDLENLTMSG 232

Query: 227 QKTGT--IITVELPDGFMKLLAMTPIGK-ETFFINNDKQKMNATQFSIWFKA-KATKAGV 282
            K       T+ +    + ++        E  F      KM A  + + F      +  +
Sbjct: 233 GKKTAAGKRTIPIHSKIVDIVKNRYDENYEYLFRTQKGTKMTADSYRVSFYNPIMEQLNL 292

Query: 283 NKSA-HGVRKFSATISADAGATAHELMATYGWKTVDQAETYT-KGADRIRLGIK 334
             S  H +R    +        A  L    G  T D  + YT K  D ++  ++
Sbjct: 293 TGSGCHDLRHTFCSKMDSYNINATTLKRIMGHSTKDVTDIYTHKTIDDLKEAVE 346


>gi|73539788|ref|YP_294308.1| site-specific tyrosine recombinase XerC [Ralstonia eutropha JMP134]
 gi|72117201|gb|AAZ59464.1| tyrosine recombinase XerC subunit [Ralstonia eutropha JMP134]
          Length = 339

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 53/307 (17%), Positives = 95/307 (30%), Gaps = 47/307 (15%)

Query: 85  GSLAVNSRISFESYFDQI----IRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFL 137
             LA ++  S+      +     + +       + T+HIR+            +S  + L
Sbjct: 26  RKLAGHTISSYRRDLTVLQAHAAKHAPGIALLALQTRHIRAFAARMHGEGLAGTSIARTL 85

Query: 138 TSMRVLFKWAVRQEY-VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS-----Q 191
           ++ R  + WA +    V  NP   V  P+      +  + E      S    G+     +
Sbjct: 86  SAWRGFYLWAAQHGLGVQANPVDGVRAPRSGHRLPKALSVEHAVALVS-HPAGTDAAALR 144

Query: 192 PRLAFEFLLYSGLRCSDSCRA-------------GVQHLQNNIFSIKTQKTGTIITVELP 238
            +  +E    SGLR ++  +              G   L     ++ T K     TV + 
Sbjct: 145 DQAVWELFYSSGLRLAELVQLDVRYERLDGYESAGWLDLSGAELTV-TGKGSRRRTVPVG 203

Query: 239 DGFMKLLAM-------------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS 285
              M+ L                P      F+     +++     +  K +A +AGV   
Sbjct: 204 SKAMEALRAWLGVREQLLRPGAAPEDASALFLGARGHRLSMRVVQMRLKQQAIRAGVPAD 263

Query: 286 --AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG---IKNSRRIS 340
              H +R   AT    +      +    G  ++   + YT   D   L     K   R  
Sbjct: 264 VHPHMLRHSFATHMLQSSGDLRAVQELLGHASIATTQIYT-SLDFQHLAKVYDKAHPRAG 322

Query: 341 SVVDSDD 347
               S D
Sbjct: 323 RAAPSKD 329


>gi|288947732|ref|YP_003445115.1| integrase family protein [Allochromatium vinosum DSM 180]
 gi|288898248|gb|ADC64083.1| integrase family protein [Allochromatium vinosum DSM 180]
          Length = 308

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 86/232 (37%), Gaps = 29/232 (12%)

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
            RK  P    + ++++   +KWA++ + V  +P    E+PK          +++  + K 
Sbjct: 67  ERKVKPHIISRRVSALSTFYKWALKSKLVETDPVYLAEKPKTPQRIPIWLERDEQDRLKE 126

Query: 185 FWSEGS-----------------QPR--LAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSI 224
              + S                 + R  + F+ L  SGLR S++    V+ ++     + 
Sbjct: 127 ALRDISDLPENIFGNTPETIMLIRQRYQVLFDLLQNSGLRISEALALRVRDVRVTGQIAR 186

Query: 225 KTQ---KTGTIITVELP----DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKA 277
             +   K      V LP    +     ++  P  +  F   +            +     
Sbjct: 187 SVRVIGKGNKERMVPLPVAFGEELAAWISDLPSDEFIFAKESGGDPPKPRTVRDYLSKII 246

Query: 278 TKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
            KAG++K  + H +R   AT   ++GA   ++ A  G   +   + YT  +D
Sbjct: 247 KKAGLDKKITPHKLRHTYATRLLESGAELIDIQALLGHANLATTQMYTHVSD 298


>gi|167854818|ref|ZP_02477596.1| site-specific tyrosine recombinase XerC [Haemophilus parasuis
           29755]
 gi|167854116|gb|EDS25352.1| site-specific tyrosine recombinase XerC [Haemophilus parasuis
           29755]
          Length = 261

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 36/230 (15%), Positives = 78/230 (33%), Gaps = 16/230 (6%)

Query: 111 YRKITTKHIRSGV---ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167
           ++++    +R  +     +  +  S    L ++R    + V+Q  + +NP L ++ PK  
Sbjct: 10  WQELDASTVRWILSQSHKQGLSAKSIGLRLVALRQFLAFLVKQGELKVNPTLGIKSPKAN 69

Query: 168 TEGIRPWTKEDMQQFKSFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
               +    E + Q  +         +     E +  SGLR S+     +  +      +
Sbjct: 70  KHLPKNIDAEQIGQLLNIDSNEPLDLRDVAMMELMYSSGLRLSELQGLDLGDMDLPNREV 129

Query: 225 KT-QKTGTIITVEL----PDGFMKLLAMT---PIGKETFFINNDKQKMNATQFSIWFKAK 276
           +   K      V +     D   + LA+           F+N    +++     +  K  
Sbjct: 130 RLLGKGNKERIVPIGSKALDAIEQWLAVRGQFHPKDNAVFLNQRGGRLSHRSIQLAMKKW 189

Query: 277 ATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             K  ++     H +R   AT   +A      +    G  ++   + YT 
Sbjct: 190 GQKQALDTHLHPHKLRHSFATHMLEASQDLRAVQELLGHSSLSTTQIYTH 239


>gi|118579558|ref|YP_900808.1| phage integrase family protein [Pelobacter propionicus DSM 2379]
 gi|118502268|gb|ABK98750.1| phage integrase family protein [Pelobacter propionicus DSM 2379]
          Length = 367

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 43/297 (14%), Positives = 91/297 (30%), Gaps = 36/297 (12%)

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFES---YFDQIIRKSGDFDYRKITTKHIRS 121
           +K  TT   L  +Y +          ++  ++S      ++ R  G+     IT + +  
Sbjct: 62  KKYTTTFDQLAEKYLEYC-------KAQRDYKSKAGRVRRLQRTFGEMRLIDITLEELER 114

Query: 122 GVESR----------------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP- 164
              +R                  +P++  + LT+++ +F  A +   +  +   +V +  
Sbjct: 115 YQSARCTEAKQPKKEGGVSSGAVSPATVNRELTALKNMFTKAEQWGLIPDSTLKTVRKVR 174

Query: 165 --KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--N 220
             K     +R     +M       S G +      F L +G R  +       H+     
Sbjct: 175 LTKENNRRLRFLAVAEMTALVDSCSRGLRE--IVVFALNTGCRRGEILSLTWDHVDLKHG 232

Query: 221 IFSIKTQKTGTIITVELPDGFMKLLAMTPIG-KETFFINNDKQKMNATQFSIWFKAKATK 279
              I   K G    + +      +           +   N             F     +
Sbjct: 233 FIRIADSKNGESRDIPINAALADMFKGVVRRIDSPYVFTNPDTGTRYQDVKRSFATACRR 292

Query: 280 AGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIK 334
           A + N   H +R   A+     G     +    G K++     Y+  A D ++  ++
Sbjct: 293 AAIMNFHFHDLRHTFASHLVMNGVDLTTVSRLLGHKSLTMTLRYSHLAPDHLKKAVE 349


>gi|167037531|ref|YP_001665109.1| tyrosine recombinase XerD [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|320115946|ref|YP_004186105.1| tyrosine recombinase XerD [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
 gi|166856365|gb|ABY94773.1| tyrosine recombinase XerD [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|319929037|gb|ADV79722.1| tyrosine recombinase XerD [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
          Length = 290

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 33/249 (13%), Positives = 91/249 (36%), Gaps = 17/249 (6%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDF-----DYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
             L+ N+  S+     Q +    +      + +K T  +    ++ +  + ++  + ++S
Sbjct: 17  KKLSKNTLESYNRDIKQFLNYLEEIGINYYNVKKSTILNYLYYLKKKGKSQATVSRNVSS 76

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195
           ++  + +   ++ +  +P   +  PK + +     T E +    S       +G + +  
Sbjct: 77  LKAFYHYLFMKKKIEEDPTYMINTPKVEKKPPTALTVEQVDMLLSIDFGNDEKGLRDKAL 136

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII------TVELPDGFMKLLAMTP 249
            E L  +GL+ S+     ++ +  +   +  +     +       +E    +++      
Sbjct: 137 IELLYATGLKVSEVISLKLEDVNLSYGYVVIRSNKERVIPIGSHAIEALKNYIEKGRKAK 196

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKA--GVNKSAHGVRKFSATISADAGATAHEL 307
            G+ T F+N   +K+         +    K   G   + + +R+  A      GA    +
Sbjct: 197 NGENTLFLNLRGEKLTRQGCWKIIREYTDKINPGFPVTPNTLRQSFAQHMLQNGADIRAV 256

Query: 308 MATYGWKTV 316
               G++T 
Sbjct: 257 QEMLGYQTD 265


>gi|323703822|ref|ZP_08115459.1| integrase family protein [Desulfotomaculum nigrificans DSM 574]
 gi|323531237|gb|EGB21139.1| integrase family protein [Desulfotomaculum nigrificans DSM 574]
          Length = 304

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 43/283 (15%), Positives = 83/283 (29%), Gaps = 35/283 (12%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVES------ 125
           L+  +       +L+  S   ++   ++ +   +        +T    R  V        
Sbjct: 6   LVKSFLMYQETKNLSERSIEWYQRTLNKFLEYCEENKISITSMTVPQARGYVHWLQNATA 65

Query: 126 ---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ-- 180
              +K+  +    F+ S++V+F + +  EY+  NP   V++ K     I  +  ++++  
Sbjct: 66  KTGKKYADNGINGFIRSVKVMFNYLLEDEYIEKNPFAKVKQIKTDKVIIHTFEPQEVKKM 125

Query: 181 --QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV--- 235
             QF        +  L    L   GLR S++    +  +      IK    G    +   
Sbjct: 126 LNQFNKSIYTDLRDALLIRILYDCGLRISEAINLKLTDIDTERNIIKVFGKGHKERIVPF 185

Query: 236 ------ELPDGFMKLLAM--TPIGKETFFINNDKQKMNATQFSIWFKA------KATKAG 281
                 E+     K        + +   F       +         +       KA   G
Sbjct: 186 GRSVKREILKYLAKREKAISKDLDEGYLFSTRQGTPL---MIRNVIRKIQTVGKKANIEG 242

Query: 282 VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              S H  R   A      G     L    G   +     Y  
Sbjct: 243 KRLSPHTFRHTFAKTYLMQGGDLFSLQQIMGHSDLSTTRQYVH 285


>gi|257485790|ref|ZP_05639831.1| Orf28 [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|302130312|ref|ZP_07256302.1| Orf28 [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|331012886|gb|EGH92942.1| Orf28 [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 319

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 53/276 (19%), Positives = 103/276 (37%), Gaps = 31/276 (11%)

Query: 84  WGSLA-VNSRISFESYFDQIIRKSGDF---DYRKITTKHI---RSGVESRKHTPSSAIQF 136
           + +L    +R ++++         G     D+R++T  H+   R+ +E R    ++  + 
Sbjct: 33  FANLDNPRTRRAYQNDLTDFSSFIGLASADDFRQVTRSHVLAWRADLEHRGLAGATIRRK 92

Query: 137 LTSMRVLFKWAVRQE-YVAINPCLSVERPKRKT-EGIRPWTKED-----MQQFKSFWSEG 189
           L ++  LF   +        NP   V+RP+ +T EG  P   +      ++   +   +G
Sbjct: 93  LAALASLFDHLLENNAVAGGNPVHGVKRPRIETNEGKTPALGDHQAKQLLEAPDTETLKG 152

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTII-TVELPDGFMKLL- 245
            + R     LLY GLR  ++ +     L  +  I  ++    G+ I  + L     + + 
Sbjct: 153 LRDRAILAVLLYHGLRREEAAQLHTHDLQERRGIKHLRVHGKGSKIRFLPLHPVAAERIH 212

Query: 246 ---------AMTPIGKETFFI-NNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKF 292
                    A TP               + A       +A A KAG+   +   HG+R  
Sbjct: 213 AYLEQDNERAATPGPLFRSLRGTTTGAGITANGIYTVVEAYAKKAGIVVEHLGVHGLRAT 272

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           +AT + +  A   ++    G   +     Y +   R
Sbjct: 273 AATNALEHDADIAKVQMWLGHANISTTRLYDRRGQR 308


>gi|254230112|ref|ZP_04923508.1| tyrosine recombinase XerC [Vibrio sp. Ex25]
 gi|151937357|gb|EDN56219.1| tyrosine recombinase XerC [Vibrio sp. Ex25]
          Length = 266

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 37/228 (16%), Positives = 79/228 (34%), Gaps = 19/228 (8%)

Query: 111 YRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170
            R++  K +R G+       SS    L+S+R  F + + +  ++ NP   V  P++K   
Sbjct: 21  VRQLAGKGMREGM-----KASSLATRLSSLRSFFDFLILRGEMSANPAKGVSAPRKKRPL 75

Query: 171 IRPWTKEDMQQFKSF---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT- 226
            +    +++ Q            + R   E +  +GLR ++     V+ +Q     ++  
Sbjct: 76  PKNLDVDEVSQLLEVNEDDPLAVRDRAMMELMYGAGLRLAELVSVDVRDVQLRSGELRVI 135

Query: 227 QKTGTIITVE--------LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKAT 278
            K      V         +         +   G+   F++    +++             
Sbjct: 136 GKGDKERKVPFSGMATEWVAKWLKVRGDLAAPGEPALFVSKLGTRISHRSVQKRMAEWGQ 195

Query: 279 KAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           K  V  + S H +R   AT   ++      +    G + +   + YT 
Sbjct: 196 KQSVASHISPHKLRHSFATHMLESSNNLRAVQELLGHENISTTQIYTH 243


>gi|291515062|emb|CBK64272.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
          Length = 300

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 46/267 (17%), Positives = 96/267 (35%), Gaps = 27/267 (10%)

Query: 85  GSLAVNSRISFESYFDQIIRKSG----DFDYRKITTKHIRSGVESRKHT----PSSAIQF 136
              +  +  ++    +Q +   G     F+ ++ITT  IR  +  R  T     +S  + 
Sbjct: 13  RRYSPLTVRNYRHDVEQFLAWLGVDDARFEPQRITTDDIREWILYRTETGRVSAASMNRE 72

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS------EGS 190
           ++S+R LF+W +R   V  +    +   +          +  M    S            
Sbjct: 73  ISSLRALFRWLLRTGAVGRDVVHPIPSLRTSQRLPAFVPESRMNGIVSECECDSEDFVRE 132

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPD---------- 239
           +  L    L   GLR ++           +  S++   K      V + +          
Sbjct: 133 RNSLIILLLYTCGLRLAELVGIDRDDFSADFSSLRIRGKGDKERIVPMLEFVREKILHYI 192

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS 297
           G ++   +    ++  F+ +  ++++ T      + +  +AGV   KS H +R   AT  
Sbjct: 193 GLIERQNICISSEKALFLTHKGKRISRTAVYRTVQEELDRAGVQGKKSPHVLRHTFATHL 252

Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324
            ++GA   E+    G  ++   + YT 
Sbjct: 253 LNSGADMREIQELLGHASLQATQVYTH 279


>gi|237713434|ref|ZP_04543915.1| mobilizable transposon [Bacteroides sp. D1]
 gi|262407221|ref|ZP_06083769.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|229446416|gb|EEO52207.1| mobilizable transposon [Bacteroides sp. D1]
 gi|262354029|gb|EEZ03121.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
          Length = 386

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 46/303 (15%), Positives = 100/303 (33%), Gaps = 26/303 (8%)

Query: 39  HESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSA-----HWGSLAVNSRI 93
            ++ F+  Y         +R             +     Y +        +  +      
Sbjct: 88  EDTPFLEYYRK----MVEERHKNPESDGNWGNWRS-CLRYLEIYCDEKTTFKDITPEFIN 142

Query: 94  SFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYV 153
            F+ + + + + +    +++   +  R     +  + +S + +   +R     A  +  +
Sbjct: 143 GFKDFLNNVEKDT----HKRTGPRRERDVF--QGLSQNSKVSYFNKLRACINQAYDERII 196

Query: 154 AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG 213
            +NP   +E  K         T E+++Q  +        + AF F   +GLR SD  +  
Sbjct: 197 PVNPLRGIEGFKAAEVKRDYLTLEEVKQLAATPCRYPILKRAFLFSCLTGLRKSDIQKLT 256

Query: 214 VQHL----QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF 269
              +           K +KTG    +++     K L      ++  F         + + 
Sbjct: 257 WSEVQKFGDYTRIVFKQKKTGGQEYLDISSQAEKYLGERGNPEDPVFTGFTYGAWTSLEL 316

Query: 270 SIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
             W    +  A +NK  + H  R   A +  D GA  + +    G K +   + Y K  D
Sbjct: 317 QRW----SMAANINKNLTFHCGRHTFAVLMLDLGADIYTVSKLLGHKELATTQIYAKVLD 372

Query: 328 RIR 330
           + +
Sbjct: 373 KNK 375


>gi|257422531|ref|ZP_05599521.1| recombinase [Enterococcus faecalis X98]
 gi|257164355|gb|EEU94315.1| recombinase [Enterococcus faecalis X98]
 gi|315155672|gb|EFT99688.1| tyrosine recombinase XerC [Enterococcus faecalis TX0043]
          Length = 299

 Score =  110 bits (275), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 39/267 (14%), Positives = 96/267 (35%), Gaps = 29/267 (10%)

Query: 85  GSLAVNSRISFE---SYFDQIIRKSGDFDY---RKITTKHIRSGVESRKHTPSSAIQFLT 138
              +  ++ +++    +F   ++ SG+ +Y     +  +   S +  ++++ +S  + + 
Sbjct: 18  RGYSEKTKKAYQEDIQHFFSFLKTSGNDNYLTVEHLDVRAYLSELYDQEYSRNSISRKIA 77

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRL 194
           S+R  +++ ++ E +  NP   V   K++    R + +++M               + + 
Sbjct: 78  SLRSFYQFLLKNEAIQENPFSYVHMKKKQLRLPRFFYEKEMDALFESAQGEQPLDLRNKA 137

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-ITVE------------LPDGF 241
             E L  +G+R S+     V  +      +     G     V             L +G 
Sbjct: 138 LLEVLYGTGIRVSECANLTVDAVDFQASVLLVHGKGNKDRYVPFGSFAQDALKDYLENGR 197

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQ----FSIWFKAKATKAGVNKSAHGVRKFSATIS 297
             L+          F+N+  +++  T      +   K  +  A ++   H +R   AT  
Sbjct: 198 ALLMTKYQKKHPYVFVNHHGEQITPTGIEYVLNQLIKKSSLNAEIH--PHMLRHTFATHL 255

Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324
            + GA    +    G   +   + Y  
Sbjct: 256 LNNGADMRTVQELLGHANLSTTQIYAH 282


>gi|149917823|ref|ZP_01906318.1| site-specific recombinase, phage integrase family protein
           [Plesiocystis pacifica SIR-1]
 gi|149821343|gb|EDM80745.1| site-specific recombinase, phage integrase family protein
           [Plesiocystis pacifica SIR-1]
          Length = 346

 Score =  110 bits (275), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 46/282 (16%), Positives = 91/282 (32%), Gaps = 42/282 (14%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFD-----YRKITTKHIRSGVESR--KHTPSSAIQFL 137
             L+ N+  ++    +  I             R +  + +R+ +     K   S+  + L
Sbjct: 16  RRLSPNTCRAYARDIEGFIDNVEARRDRPAKLRDLRLREVRAYLAELHGKRAASTVGRKL 75

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPR 193
           +++R   ++  R+ ++A N    + RPK   +       ED+ +         + G + R
Sbjct: 76  SALRTFAEYCRREGWIAENEVALMRRPKLGRKLPVALPVEDLTEMIDGEQRPGAVGLRDR 135

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQ--------NNIFSIKTQKTGTIITVEL-------- 237
              E L  +GLR S++    +  L+             +   K      V L        
Sbjct: 136 ALLEVLYGAGLRVSEAVALNLADLRWEGSGDAARLTLRVLQGKGNKDRVVPLGRKGAEAM 195

Query: 238 ---PDGFMKLLAMTPIGKE----------TFFINNDKQKMNATQFSIWFKAKATKAGVNK 284
               D    LLA TP                F+     +++          +   +G   
Sbjct: 196 RAWLDTREGLLAPTPREGMRSPARIDAGKAVFLGARGGRLSTRVAREVVYRRCQASGARA 255

Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
               HG+R   AT    +G     + +  G  ++   + YT 
Sbjct: 256 VVGPHGLRHSFATHLLQSGCDLRSIQSMLGHASLSTTQRYTH 297


>gi|468715|emb|CAA55226.1| sss [Pseudomonas aeruginosa]
          Length = 302

 Score =  110 bits (275), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 35/259 (13%), Positives = 89/259 (34%), Gaps = 19/259 (7%)

Query: 85  GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIR---SGVESRKHTPSSAIQFLT 138
             ++ ++   +     +I+    K+G  D+  + T+ +R   + +  +  +  S  + L+
Sbjct: 16  RQVSAHTLDGYRRDLLKILALAEKAGLSDWNALDTRSLRTFVARLHQQGQSSRSLARLLS 75

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRL 194
           + R L+++ +R+     +P   +  PK   +  R    +   Q      E      + + 
Sbjct: 76  ATRGLYQYLLREGRCRHDPANGLRAPKSPRKLPRTLDADRALQLLDGAVEDDFIARRDQA 135

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-VELPDGFMKLLAM------ 247
             E    SGLR S+     ++ L      ++ +  G  +  + +     + L        
Sbjct: 136 LLELFYSSGLRLSELVGLDLEWLDLKEGLVRVRGKGNKVRELPVGKAARQALEAWLPLRT 195

Query: 248 -TPIGKETFFINNDKQKMNATQFSIWFKAK-ATKAGVNKSAHGVRKFSATISADAGATAH 305
                    FI    +++      +  +     + G +   H +R   A+   ++     
Sbjct: 196 QAAPEDGAVFIGRSGKRLTPRAIQLRVRQAGVRELGQHLHPHMLRHSFASHLLESSGDLR 255

Query: 306 ELMATYGWKTVDQAETYTK 324
            +    G   +   + YT 
Sbjct: 256 AVQELLGHADIATTQIYTH 274


>gi|54023975|ref|YP_118217.1| site-specific tyrosine recombinase XerD [Nocardia farcinica IFM
           10152]
 gi|54015483|dbj|BAD56853.1| putative recombinase [Nocardia farcinica IFM 10152]
          Length = 316

 Score =  110 bits (275), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 42/292 (14%), Positives = 82/292 (28%), Gaps = 43/292 (14%)

Query: 75  ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-------IRSGVESR 126
           I  Y          A N+  ++     +      +     +             +     
Sbjct: 6   IDAYLDHLAVERGAARNTLGAYRRDLGRYRDFLTERGIGGLEQVREADVAAFTVALRSGG 65

Query: 127 KHTP----SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
              P    SS  + L ++R L ++A  +   + +   +V+ P       +    + + + 
Sbjct: 66  GDHPPLAASSVARALIAVRGLHRFAAAEGMTSTDVAHAVKPPTPGRRLPKALPYDQVLRL 125

Query: 183 KSFW----------------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-NIFSIK 225
                                 G + R   E L  +G R S+     V  L       + 
Sbjct: 126 LEAAGGGPAEDGDTAAADGGPRGLRDRALLELLYSTGARISEMVGLDVDDLDTTERAVVL 185

Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKE------------TFFINNDKQKMNATQFSIWF 273
             K G    V +    +  +    +                 F+N    +++        
Sbjct: 186 RGKGGKQRIVPIGRPALAAVDAYLVRGRPVLAAAGKGTGGALFLNVRGGRLSRQSAWQVL 245

Query: 274 KAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           +  A +AG+    S H +R   AT   D GA    +    G  +V   + YT
Sbjct: 246 QTAAERAGIGAAVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYT 297


>gi|317128840|ref|YP_004095122.1| integrase family protein [Bacillus cellulosilyticus DSM 2522]
 gi|315473788|gb|ADU30391.1| integrase family protein [Bacillus cellulosilyticus DSM 2522]
          Length = 324

 Score =  110 bits (275), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 39/262 (14%), Positives = 91/262 (34%), Gaps = 20/262 (7%)

Query: 86  SLAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSM 140
            L+  +   ++ +F  +          D    +I  ++    +       S+    L ++
Sbjct: 45  GLSKQTLFDYDVHFKYLLDFLERDLMADEMTTEIFLEYRNYMLNDLGLKASTVNIRLRTI 104

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ----QFKSFWSEGSQPRLAF 196
           R   +++  + ++        +  K   + +   +  +++    Q    +  G + ++ F
Sbjct: 105 RAFLRYSYEEGWIDQPIHEKFKPVKAPQKEVDALSPREIKLLLSQINDDYYAGFRDKVLF 164

Query: 197 EFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELP------DGFMKLLAMT 248
             +L S  R S+      +++   N +  ++   T T +   +P          + +  T
Sbjct: 165 FTMLDSMARISELLAIKRENVDLRNGVIKLEADGTKTKVDRFVPISTRTSKLLQEYINET 224

Query: 249 PI-GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAH 305
               +E  F+  D Q ++A             AG+NK  S H  R   A +    G    
Sbjct: 225 SDFEQEILFLTYDGQVLSANTVRKSLMDYGKAAGINKQVSPHIWRHSGAILYIMNGGDPF 284

Query: 306 ELMATYGWKTVDQAETYTKGAD 327
            L +  G  T+     Y + A+
Sbjct: 285 SLKSILGHTTLHMTNHYVQMAN 306


>gi|111224556|ref|YP_715350.1| site-specific tyrosine recombinase [Frankia alni ACN14a]
 gi|111152088|emb|CAJ63815.1| site-specific tyrosine recombinase (partial match) [Frankia alni
           ACN14a]
          Length = 349

 Score =  110 bits (275), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 51/318 (16%), Positives = 96/318 (30%), Gaps = 53/318 (16%)

Query: 66  KKPTTLKWLISEYRKSAH-WGSLAVN----SRISFESYFDQII-------RKSGDFDYRK 113
            +  T   +I+ Y         LA N     R     Y + +           G+ +   
Sbjct: 3   SQRGTPGNVIARYLHHLEGERGLAQNSVLAYRRDLRRYLNHLSAQGLCSLDAVGEAEVAG 62

Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
                            +S  + L ++R L ++A  +  V+ +    V  P    +  + 
Sbjct: 63  FAAALRLGDETHPPLAAASVARMLVAVRSLHRFAAEEGDVSEDVSRPVRPPTPPRKLPKA 122

Query: 174 WTKEDMQQFKSFWSEGSQPRLA----------------------------FEFLLYSGLR 205
            + + +    +  +   +  +A                             E L  +G R
Sbjct: 123 LSVDQVTAVLAAAAGTPRAGVAGVAGRAEDLAAAPVEPAEAVRRLRATALLELLYGTGAR 182

Query: 206 CSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLL----------AMTPIGKET 254
            S++    V  L     +++   K G    V L    +  L             P     
Sbjct: 183 ISEAVGLDVDDLDLESAAVRLHGKGGRDRIVPLGRCAVAALGDYLRLGRPSLAGPRSGAA 242

Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGW 313
            F++    +++        +  A +AGV+  S H +R   AT   D GA    +    G 
Sbjct: 243 VFLSRRGNRLSRQSAWTVLRTAADQAGVDGVSPHVLRHSFATHLLDGGADVRVVQELLGH 302

Query: 314 KTVDQAETYT-KGADRIR 330
            +V   + YT    DR+R
Sbjct: 303 ASVSTTQIYTLVTVDRLR 320


>gi|329946754|ref|ZP_08294166.1| site-specific recombinase, phage integrase family [Actinomyces sp.
           oral taxon 170 str. F0386]
 gi|328526565|gb|EGF53578.1| site-specific recombinase, phage integrase family [Actinomyces sp.
           oral taxon 170 str. F0386]
          Length = 264

 Score =  110 bits (275), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 78/220 (35%), Gaps = 26/220 (11%)

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---- 186
           SSA + +T++R   K+ + +   + +P  +V  P+      +  + E++++         
Sbjct: 26  SSASRTVTAVRGWHKFLLAEGTTSQDPSATVRPPQPGRRLPKALSIEEVRRLLEAASIDD 85

Query: 187 -SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVEL------- 237
                + R   E L  +G R S++    V  L  +   ++   K      V +       
Sbjct: 86  SPVSLRDRALLEVLYATGARISEAVGLVVDDLDADSRLLRLFGKGRKERVVPMGTYAWEA 145

Query: 238 PDGF----MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--------- 284
            D +       LA    G    F+N   + ++        +  A +AG+           
Sbjct: 146 LDAYLVRGRPALAEKGRGVPQVFLNTLGRPLSRQSAWAVLQQAAERAGLTGAGASTERHI 205

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           S H +R   AT     GA    +    G  +V   + YTK
Sbjct: 206 SPHTLRHSFATHLLAGGADVRVVQEMLGHASVTTTQIYTK 245


>gi|296444917|ref|ZP_06886879.1| integrase family protein [Methylosinus trichosporium OB3b]
 gi|296257585|gb|EFH04650.1| integrase family protein [Methylosinus trichosporium OB3b]
          Length = 430

 Score =  110 bits (275), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 67/380 (17%), Positives = 121/380 (31%), Gaps = 46/380 (12%)

Query: 10  FVTKERT-RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
           FV + R    G+ +   R   G+  +L  P ++    A M A            +  ++ 
Sbjct: 42  FVVEYRPHGGGRSVAKRRVTLGKTTQL-TPEQARRAAADMLAQVRLGADPAAEKASHREA 100

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128
            T+  LI  +      G L  ++  S+ +  D +    G      +T   + +     + 
Sbjct: 101 LTVAGLIEAFEAEHVAGKLKDSTGRSYRAGLDALKGAHGSLKAEALTRGQVAALHAKMRA 160

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
           T  +A + L +   +F W +++  V    NP   ++R K      R  T E++ +     
Sbjct: 161 TRYAANRALATWSKMFAWGMKRGLVPKGDNPAREIDRYKEDKRE-RFLTSEELARLGDAL 219

Query: 187 SEGSQPRLAFE------------------------------FLLYSGLRCSDSCRAGVQH 216
            EG    L +E                               L+ +G R  +   A    
Sbjct: 220 REGETSGLVYEVDESKPKAKHAPKLENRRVKLDPLAAGAIRLLILTGARLREILDAQWSQ 279

Query: 217 LQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPI--GKETFFIN-NDKQKMNATQFSI 271
           +     I  +   KTG   ++ L      +LA  P   G         D +         
Sbjct: 280 VDSERGILFLSDSKTGRK-SIYLSAAAQAVLANLPKIEGNPHVIAGAKDGEP--RADLKK 336

Query: 272 WFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRI 329
            + A    AG+     H +R   A++ A A      +    G         Y    AD +
Sbjct: 337 PWSAVKRAAGLEGVRLHDLRHSFASVGAGASLGLPIIGKLLGHTQAATTARYAHLDADPL 396

Query: 330 RLGIKNSRR-ISSVVDSDDP 348
           R  +      I++ +D   P
Sbjct: 397 RRAVDTIGATIAAAMDGGKP 416


>gi|15894453|ref|NP_347802.1| site-specific tyrosine recombinase XerC [Clostridium acetobutylicum
           ATCC 824]
 gi|15024091|gb|AAK79142.1|AE007632_7 Integrase/recombinase (xerD/xerC family) [Clostridium
           acetobutylicum ATCC 824]
 gi|325508584|gb|ADZ20220.1| site-specific tyrosine recombinase XerC [Clostridium acetobutylicum
           EA 2018]
          Length = 299

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 37/263 (14%), Positives = 95/263 (36%), Gaps = 28/263 (10%)

Query: 88  AVNSRISFESYF--------DQIIRKSGDFDYRKITTKHIRSGVE---SRKHTPSSAIQF 136
           +  +R  + +          ++  + + D D+  I  + I+  +          ++  + 
Sbjct: 18  SEGTRKQYLNDLKVWFRYMKNKKRQITKDEDFVNIDYREIKKFINYLIKNGRAATTIRRK 77

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVER---PKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
           + S+++ F++  +++ V  NP   +++   PK      +  + E+ ++  +  +  +  R
Sbjct: 78  IISLKLFFQYLDQEKIVLDNPFDKIDKRDLPKIPKRLPKSLSIEECKRLINSVNSRNTIR 137

Query: 194 --LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251
                   L +G+R S+     V ++      I  ++    + V L D   K++ +    
Sbjct: 138 DKCIIIIFLSTGMRLSELISLNVDNILEEEIRIIGKENKERV-VYLTDQAKKIVKLYIKQ 196

Query: 252 KE------TFFINNDKQKMNATQFSIWFKAKATKAGVNKS----AHGVRKFSATISADAG 301
           +         F++    ++         +     AG+        H +R   AT+   +G
Sbjct: 197 RPKNLKTKALFLSERNGRIARGTVQNAIRNAMYNAGIKGDNDVLVHILRHTFATLLYQSG 256

Query: 302 -ATAHELMATYGWKTVDQAETYT 323
                +L    G + V     YT
Sbjct: 257 EVDLFQLQELLGHEDVSTTRIYT 279


>gi|227879131|ref|ZP_03997015.1| integrase-recombinase [Lactobacillus crispatus JV-V01]
 gi|227861288|gb|EEJ68923.1| integrase-recombinase [Lactobacillus crispatus JV-V01]
          Length = 302

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 41/261 (15%), Positives = 99/261 (37%), Gaps = 24/261 (9%)

Query: 88  AVNSRISFESYF---DQIIRKSGDFD----YRKITTKHIRSGVESRKHTPSSAIQFLTSM 140
           +  + +++++     ++   ++G F      R+   +     +  RK   SS ++ ++S+
Sbjct: 22  SAKTVLAYQTDLHEAERFWHENGGFPGWTKVRERDIQVYLQHLAERKLARSSQLRKMSSL 81

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLAF 196
              +++  R++ VAI+P   +   + + +  + + + +++Q             +    F
Sbjct: 82  HSFYRFLTRRKLVAIDPTKGITLRRGEKKLPQFFYQPELKQVFDSLKGNKPLTMRNLAMF 141

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-ITVELPDGFMKLL-----AMTP- 249
           E    +G+R S+     +  L  ++ +I     G     V   D   K L        P 
Sbjct: 142 ELFYATGMRVSEVSNLTLNQLDLDLQTILVHGKGNKDRYVAFDDKTKKSLIAYLENARPL 201

Query: 250 ----IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGAT 303
                 ++  F+NN    + +       +    +AG++     H +R   AT   + GA 
Sbjct: 202 LLKNDDEQHVFLNNQGTGITSRGIETVMQKTFNQAGISGKVHPHELRHSFATAMLNNGAD 261

Query: 304 AHELMATYGWKTVDQAETYTK 324
              +    G  ++   + YT 
Sbjct: 262 LRSVQELLGHSSLSATQIYTH 282


>gi|254518936|ref|ZP_05130992.1| site-specific tyrosine recombinase XerC [Clostridium sp. 7_2_43FAA]
 gi|226912685|gb|EEH97886.1| site-specific tyrosine recombinase XerC [Clostridium sp. 7_2_43FAA]
          Length = 457

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 47/303 (15%), Positives = 98/303 (32%), Gaps = 46/303 (15%)

Query: 85  GSLAVNSRISFESYFDQIIR--------------KSGDFDYRKITTKHIRS-------GV 123
              + N+   +E       R              +  + D R I    +R          
Sbjct: 156 KGKSPNTIKGYEIDLTLFFRFLKIYKGLITDDSLEFSEIDIRDIDNSFVRKIKLTDLYAF 215

Query: 124 ESRKHTPS-----SAIQFLTSMRVLFKWAV-RQEYVAINPCLSVERPKRKTEGIRPWTKE 177
            S           +  + + +++  FK+   + + +  NP L +E PK         + +
Sbjct: 216 LSFAEKQRENGSYARARKVAALKSYFKFLNGKAKIIDDNPTLELESPKINKRHPVYLSLD 275

Query: 178 D----MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233
           +    +           +        L  G+R S+ C   +  ++ +  +I   K     
Sbjct: 276 ESVNLLSSLDKDNKNYYRDYCILTLFLNCGMRLSELCSIKLDKIKGDTLTII-GKGDKER 334

Query: 234 TVELPDGFMKLLA----------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV- 282
           TV L +  +K +            TP  KE   +++  + +N     +  K     +G+ 
Sbjct: 335 TVYLNEACLKAIDNYLAVRDTSKCTPEDKEYLLLSSRYKPINKRTVELLVKKHIFNSGLS 394

Query: 283 --NKSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
               + H +R  +AT+    G      L +  G + +   + YT   + I     NS  +
Sbjct: 395 NEKYTPHKLRHTAATLMYKHGNVDIRSLQSILGHENISTTQIYTHVDEEILRDAVNSNPL 454

Query: 340 SSV 342
           S +
Sbjct: 455 SKL 457


>gi|38234408|ref|NP_940175.1| putative phage integrase [Corynebacterium diphtheriae NCTC 13129]
 gi|38200671|emb|CAE50367.1| Putative phage integrase [Corynebacterium diphtheriae]
          Length = 271

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 47/256 (18%), Positives = 88/256 (34%), Gaps = 12/256 (4%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
           I++Y++    G  A  +     S+  +      D     +TT  I   + + +  P++  
Sbjct: 10  IADYQEHLLAGGRARGTIHVRISHISR-CLTFIDKPLWAVTTGDIERWLAAGEWGPAARK 68

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
              TS+RV F WAVR+  +  NP +++    +     RP     +    +      + RL
Sbjct: 69  SARTSVRVFFAWAVREGLIETNPAITIIPVPQVRSVPRPCPDALIS--DAMKVAAPRVRL 126

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQ---NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251
           A E +   GLR  +  R     ++            K G    +  P    + +A     
Sbjct: 127 AIEIMATCGLRRDECARVRAGDVEPVGQGWILRVRGKGGHERLIPCPPHLARRIAAA--- 183

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATY 311
           +   F       ++A             A    + H +R   AT++         +    
Sbjct: 184 QGWVFPGGANGHVSAGWLGKLISRALPGA---WTPHKIRHRYATVAYGDTYDLRAVQELL 240

Query: 312 GWKTVDQAETYTKGAD 327
           G  +V   + YT  +D
Sbjct: 241 GHASVATTQIYTAVSD 256


>gi|187251859|ref|YP_001876341.1| integrase family protein [Elusimicrobium minutum Pei191]
 gi|186972019|gb|ACC99004.1| Integrase family protein [Elusimicrobium minutum Pei191]
          Length = 337

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 52/268 (19%), Positives = 94/268 (35%), Gaps = 22/268 (8%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSR--ISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
           K+  T   +   Y     W      +R   +F+  FD I+ + G      ITT+ I+   
Sbjct: 55  KQDVTFAEIAERY-----WSLHGRKTRGAQTFKYTFDIILSRFGHMKVADITTEDIQKFY 109

Query: 124 ES--RKHTPSSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                + +PS+A +  +  R +   A+  + Y   NPC+ V R +      + +TKED++
Sbjct: 110 NDTWERTSPSTANRHFSLFRAIINKALNLKLYKGQNPCIGVVRQRDNPPRDKYFTKEDIK 169

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELP 238
                     +P +AF  L  +G R  +      + +     I  I   K+G    + L 
Sbjct: 170 SLLVTAENRLKPIIAFAVL--TGCRKMEILNLRWKDVDFYGGIIRITMSKSGKPREIPLA 227

Query: 239 DGFMKLLAMTPI--GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATI 296
           +    +L         + F I           F+   K    +       H  R   A++
Sbjct: 228 NDLRPILLAMHTNPQDKVFNITV---PALKYSFNKLLKKLGFE---GYCFHTCRHTFASL 281

Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324
                    +L    G  T++    Y+ 
Sbjct: 282 YMQNDGNITDLQRILGHATIELTMRYSH 309


>gi|255013631|ref|ZP_05285757.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_7]
          Length = 367

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 43/218 (19%), Positives = 78/218 (35%), Gaps = 21/218 (9%)

Query: 127 KHTPSSA---IQFLTSMRVLFKWAVRQEYVAINP---CLSVERPKRKTEGIRPWTKEDMQ 180
           K  P SA     +          AVR + +  NP       E+PK         T E+++
Sbjct: 145 KGKPLSASTRNTYYQIFNGALNAAVRAKRILKNPFNEMEKSEKPKMPESVRSYMTIEEVR 204

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT----QKTGTIITVE 236
              +   +    + A+ F  + GLR SD      +++  +    +     QKT   I + 
Sbjct: 205 SLIATPMQNEGVKSAYLFSCFCGLRISDIIGLQWKNVFIDNGQYRLAVAMQKTKEPIYLP 264

Query: 237 LPDGFMKLL--AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292
           L +  +K +         +  F          +  +   K  A  AG++K  + H  R  
Sbjct: 265 LSNEALKWMPERGDKTADDHVF-------DLPSGINQLIKPWAKAAGISKRFTFHTARHT 317

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
            AT+    GA  + +    G  +V   + Y K  ++ +
Sbjct: 318 FATMMLTLGADLYTVSKLLGHTSVKMTQVYAKIVNKKK 355


>gi|323466640|gb|ADX70327.1| Integrase/recombinase XerC [Lactobacillus helveticus H10]
          Length = 302

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 36/237 (15%), Positives = 86/237 (36%), Gaps = 21/237 (8%)

Query: 107 GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
           G  + ++   +     +  RK   SS  + ++S+   F++  R++++ I+P   +   + 
Sbjct: 48  GWKNVQERDIQIYLQNLADRKLVRSSQARQMSSLHSFFRFLTRRKFIKIDPTQGITLRRG 107

Query: 167 KTEGIRPWTKEDMQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222
           + +    +   +++Q             +    FE    +G+R S+     ++ +  N+ 
Sbjct: 108 EKKLPEFFYGNELKQVFDSLKGNKPLTMRNLALFELFYATGMRVSEVSNLTLRQIDLNLQ 167

Query: 223 SIKTQKTGTI-------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF 269
           +I     G               +   L D    LL      ++  F++N    ++    
Sbjct: 168 TILVHGKGNKDRYVAFDDHTKKSLVRYLEDARPNLLKDET--EQHVFLSNLGNPLSKRGI 225

Query: 270 SIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
               +    +AG++     H +R   AT   + GA    +    G  ++   + YT 
Sbjct: 226 EYVMQKTFNQAGISGKVHPHELRHTFATAMLNNGADLRSVQELLGHSSLSATQIYTH 282


>gi|227891778|ref|ZP_04009583.1| phage integrase [Lactobacillus salivarius ATCC 11741]
 gi|227866437|gb|EEJ73858.1| phage integrase [Lactobacillus salivarius ATCC 11741]
          Length = 381

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 63/368 (17%), Positives = 127/368 (34%), Gaps = 55/368 (14%)

Query: 5   LRLPPFVTKERTRHGKIIYYFR--------KGHGRRIRLPYPHESTFIPAYMSALTGSTP 56
           +++  ++ K+        Y FR         G  R IR             +  +     
Sbjct: 2   VKIQKYLDKDE----NTRYKFRYYAGVDELTGKQRYIRRQGFTSEEDAKNELLKIKYLVS 57

Query: 57  KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFE-SYFDQIIRKSGDFDYRKIT 115
             +Y    +        ++ E+  + H   +  ++    E      +     D    KIT
Sbjct: 58  TNQYFKDVKS--GKFGDVLDEWL-TLHKTRVKASTYHIIETRVTKYVRPYFNDMYVDKIT 114

Query: 116 TKHIRSGVES-RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK---TEGI 171
            +H +  V      TP   +  ++ ++    +A+R   +  NP L V +PK++   ++  
Sbjct: 115 VRHCQDFVSKAFVTTPKGYVYLISIVKNTLDYALRLGMIESNPMLYVIKPKKQATISDKH 174

Query: 172 R-PWTKEDMQQFKSFWSEGSQPR-LAFEFLLYSGLRCSDSCRAGVQHLQ----------- 218
              + K+++++F       +Q +   F  L YSG+R  +        L            
Sbjct: 175 DNFYNKDELKKFLEVAKYYNQEKYTIFRLLAYSGIRIGECLALTWHDLDYKNNTITINKT 234

Query: 219 ----NNIFSIKTQKTGTIITVELPD----------------GFMKLLAMTPIGKETFFIN 258
               +   +I+T KT     V   D                  +K+   +    +  F +
Sbjct: 235 LARTDKGITIQTPKTKASNRVISLDVETIQILKSWQLEQRKQLLKIGINSMNKHQLIFNS 294

Query: 259 NDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVD 317
           N    + ++  +   K  A KAG++  ++HG R   AT+   +G    ++ A  G   V 
Sbjct: 295 NKNSFIFSSVITYDIKQIAKKAGIHPITSHGFRHTHATLLFASGMDIKQVQARLGHSKVQ 354

Query: 318 QA-ETYTK 324
              + YT 
Sbjct: 355 TTLDVYTH 362


>gi|197122574|ref|YP_002134525.1| tyrosine recombinase XerD [Anaeromyxobacter sp. K]
 gi|196172423|gb|ACG73396.1| tyrosine recombinase XerD [Anaeromyxobacter sp. K]
          Length = 298

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 41/267 (15%), Positives = 84/267 (31%), Gaps = 24/267 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRKHTPSSAIQFLT 138
             LA NS  ++     + +    +              +   + +  R  +P S  + L+
Sbjct: 19  KGLAENSVEAYGRDLRRYLEHLDELGVDAWERVGRGEIQAHLAELVRRGLSPRSQARALS 78

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FWSEGSQPRL 194
           ++R L +    +   + +P   +E P+         + +++ +  +      + G + R 
Sbjct: 79  AIRSLHRLLAAERVTSADPSDEIESPRPGRRLPGLLSHDEVDRLLAAPDVRSAAGIRDRA 138

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKLLAMT----- 248
             E L  +GLR S+     +  +       I   K      V +     + +        
Sbjct: 139 MLELLYATGLRVSELVSLQLNDVNLETRVLIARGKGNKERIVPVGAPAAEAVKAYLAVAR 198

Query: 249 -----PIGKETFFINNDKQKMNATQFSIWF--KAKATKAGVNKSAHGVRKFSATISADAG 301
                    +  F+     +M    F+      A+        S H +R   AT   + G
Sbjct: 199 ERLLHGRRSKDLFVTPRGGRMTRQGFAKILDRCARRAGIRRRISPHKLRHSFATHLLEGG 258

Query: 302 ATAHELMATYGWKTVDQAETYTKGADR 328
           A    +    G   V   + YT   DR
Sbjct: 259 ADLRAVQEMLGHADVSTTQIYTH-VDR 284


>gi|241664950|ref|YP_002983310.1| site-specific tyrosine recombinase XerC [Ralstonia pickettii 12D]
 gi|240866977|gb|ACS64638.1| tyrosine recombinase XerC [Ralstonia pickettii 12D]
          Length = 328

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 52/289 (17%), Positives = 97/289 (33%), Gaps = 40/289 (13%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIR----KSGDFDYRKITTKHIRSGVESR--- 126
           I+ Y  +  +   L+ ++  S+      + R     + + D  ++ + HIR  +      
Sbjct: 19  IAAYLDALRFERQLSPHTLESYTRELAVLQRLGAQHAANIDLTQLQSHHIRRMMAQLHGD 78

Query: 127 KHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQ 181
             +  S  + L++ R  FKW A+R   V  NP   V  PK      +  + E     M+Q
Sbjct: 79  GLSGRSIARALSAWRGWFKWMALRDAAVTANPVDGVRAPKSPKRLPKALSVEQAVALMEQ 138

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN------IFSIKTQ------KT 229
                 E  + R   E     GLR S+     ++H++           ++ +      K 
Sbjct: 139 LPGDDPETVRDRAVNELFYSCGLRLSELVSLDMRHVKAGAYESASWLDLEAREVQVLGKG 198

Query: 230 GTIITVELP-------------DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK 276
               TV +                 +      P      F++   +++   Q  +  K  
Sbjct: 199 SKRRTVPVGTKAAQALAAWLAVRAQLAKPDAAPEDAHALFLSPRGKRLAQRQIQLRMKRN 258

Query: 277 ATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           A  AGV      H +R   AT    +      +    G  ++   + YT
Sbjct: 259 AIAAGVPADVHPHVLRHSFATHMLQSSGDLRAVQELLGHASIASTQVYT 307


>gi|85713796|ref|ZP_01044786.1| tyrosine recombinase XerD [Nitrobacter sp. Nb-311A]
 gi|85699700|gb|EAQ37567.1| tyrosine recombinase XerD [Nitrobacter sp. Nb-311A]
          Length = 340

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 50/325 (15%), Positives = 102/325 (31%), Gaps = 40/325 (12%)

Query: 43  FIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI 102
           F+ A  S  +        + S +   T L  L  +    A       N+  ++    + +
Sbjct: 4   FLDANRSFTSLENAIGGGMTSDKVSDTKLAALFLDML--AAEQGAGENTLDAYRRDLEDL 61

Query: 103 IRKSGDFDYRKI-----TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINP 157
                      +     T +   + ++ R    SS  + L++MR LF++ + +   + +P
Sbjct: 62  SAFLARARRSFVIADTQTLRDYLNDLDLRGFKSSSVARRLSAMRHLFRFLLSERVRSDDP 121

Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFWSE--------------GSQPRLAFEFLLYSG 203
              +  PKR     +  +  D+ +  +                   ++     E L  +G
Sbjct: 122 AAILSGPKRGRSLPKILSIADVDRLLARAKADAESPDISPARRLRAARLYCLLEVLYATG 181

Query: 204 LRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKLLA-------------MTP 249
           LR S+     +   + +    +   K G    V L D   + +A              T 
Sbjct: 182 LRVSELVSLPLSAARRDARMIVVRGKGGKERLVPLNDASRQAMANYLVAIDDQRGAGKTA 241

Query: 250 IGKETFFINNDK--QKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATA 304
             +  +   +      +    F+   K  A  AG+     S H +R   A+     GA  
Sbjct: 242 ATRPKWLFPSFGDSGHLTRQHFARELKELAAAAGLAPRLVSPHVLRHAFASHLLHNGADL 301

Query: 305 HELMATYGWKTVDQAETYTKGADRI 329
             +    G   +   + YT   +  
Sbjct: 302 RIVQTLLGHTDISTTQIYTHVVEER 326


>gi|255283924|ref|ZP_05348479.1| tyrosine recombinase XerD [Bryantella formatexigens DSM 14469]
 gi|255265506|gb|EET58711.1| tyrosine recombinase XerD [Bryantella formatexigens DSM 14469]
          Length = 305

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 40/278 (14%), Positives = 92/278 (33%), Gaps = 26/278 (9%)

Query: 78  YRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF 136
           Y +   +   L  N+  ++     Q        +  K   +   + +  +K+   +  + 
Sbjct: 10  YLEYCEYRKELDKNTIKAYRIDLCQYFTFICCDEPNKEKIEVYITELH-KKYKQKTVKRK 68

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQQFKSF---------- 185
           + S++  + +   +E ++ NP   ++ + K      R   +E++++  ++          
Sbjct: 69  IASLKAFYNYLEEEEIISYNPFRKIKVKFKETITLPRIILREEIEKLLNYMYDCLKKNVL 128

Query: 186 --WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG-- 240
             +    +     E L  +G R  +        +  N   I+   K G    V++ +   
Sbjct: 129 TGYKYQLRDIAVVEVLFATGARVYEISNIREDSVNLNSGQIRIMGKGGKERYVQISNSSV 188

Query: 241 ---FMKLLAM---TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292
                K              FFINN   +          K  A +AG+ +  + H  R  
Sbjct: 189 LAVLRKYYKQNENEIKKSGCFFINNRGNRYTEQSIRSMLKKYAKQAGIARNITPHMFRHS 248

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
            AT   + G     +    G  ++   + Y   A + +
Sbjct: 249 FATYLIEEGVDVSCVQQIRGHSSIKTTQIYIHIAAKKQ 286


>gi|119471652|ref|ZP_01614037.1| mobilizable transposon, int protein [Alteromonadales bacterium
           TW-7]
 gi|119445431|gb|EAW26718.1| mobilizable transposon, int protein [Alteromonadales bacterium
           TW-7]
          Length = 377

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 49/265 (18%), Positives = 86/265 (32%), Gaps = 15/265 (5%)

Query: 81  SAHWGSLAVNSRISFESYFDQIIRKSGDFD------YRKITTKHIRSGVESRKHTPSSAI 134
           S    SL  +S +  + Y +       DFD      +R    KH R+  +    + +++ 
Sbjct: 111 SPSNVSLWESSLMHLKRYCEGNPLSFADFDADILLGFRTYLIKHARTKSDKLLSSNTTSC 170

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
            F   +R     A  +  +  NP   V+  K +        +E++             + 
Sbjct: 171 YFNK-VRAALNKAFHEGIIRRNPVNEVKTIKIEQNPRNYLEEEEVTALYKTECRYDVLKR 229

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252
           AF F   +G+R SD  +   + L   +   + +  KT  +  + LP     LL       
Sbjct: 230 AFLFGCLTGMRWSDIQKLTWEKLTMIDPRATFQHIKTKQLQYLHLPSDATMLLGTPGEDH 289

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMAT 310
           E  F             + W      +AG+ K  + H  R   A          + +   
Sbjct: 290 ERVFKGLKYSSYTNVALTQWM----LRAGITKHITFHCARHTFAVRMLTNDVDIYTVSKL 345

Query: 311 YGWKTVDQAETYTKGADRIRLGIKN 335
            G   +   + YT   DR R     
Sbjct: 346 LGHSELKTTQIYTDIIDRKRKEAMT 370


>gi|326384761|ref|ZP_08206438.1| site-specific tyrosine recombinase XerD [Gordonia neofelifaecis
           NRRL B-59395]
 gi|326196569|gb|EGD53766.1| site-specific tyrosine recombinase XerD [Gordonia neofelifaecis
           NRRL B-59395]
          Length = 307

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 50/287 (17%), Positives = 90/287 (31%), Gaps = 31/287 (10%)

Query: 68  PTTLKWLISEYRKSAH-WGSLAVNSRISFESYF---DQIIRKSGDFDYRKITTKHIRSGV 123
             T+   I+ Y          A N+  S+       +  +   G     ++T   +R+ +
Sbjct: 2   AGTVDDAIARYLDHLTVERGSATNTVASYRRDLLRYNTFLAGRGVTTMSEVTEDDVRAFL 61

Query: 124 ESRKHT------PSSAI----QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
            + +        P  A     + L + R   K+   +   A +   SV  PK      + 
Sbjct: 62  VALRRGDPERGVPGLADSSVARTLVAARGFHKFCAAEGLTATDVAHSVRPPKPPRRLPKS 121

Query: 174 WTKEDMQQFKSFW-----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQ 227
              +D+              G + R   E L   G R S+     +  L   +   +   
Sbjct: 122 LPIDDVLAILDAAGAVDGPRGLRDRALVELLYSCGARISEVTSLDLDDLDLEHRAVVLRG 181

Query: 228 KTGTIITVELPDGFMKLLAM---------TPIGKETFFINNDKQKMNATQFSIWFKAKAT 278
           K G    V +    ++ +                   F+N    +++           A 
Sbjct: 182 KGGKERIVPVGGPAIEAVDAYLVRGRPALVKKSTPALFLNIRGGRLSRQSAWQVLVDAAE 241

Query: 279 KAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           +AGV+K  S H +R   AT   D GA    +    G  +V   + YT
Sbjct: 242 RAGVDKEVSPHTLRHSFATHLLDGGADVRVVQELLGHSSVTTTQVYT 288


>gi|224025008|ref|ZP_03643374.1| hypothetical protein BACCOPRO_01742 [Bacteroides coprophilus DSM
           18228]
 gi|224018244|gb|EEF76242.1| hypothetical protein BACCOPRO_01742 [Bacteroides coprophilus DSM
           18228]
          Length = 389

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 44/238 (18%), Positives = 86/238 (36%), Gaps = 12/238 (5%)

Query: 99  FDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158
           F + +       +++   +  R     +  + +S + +   +R     A  +  ++INP 
Sbjct: 147 FKEFLENVEKDTHKRTGPRRERDTF--QGLSQNSKVSYFNKLRACINKAYEERIISINPL 204

Query: 159 LSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218
             +E  K         T E++++  S        + AF F   +GLR SD  +     +Q
Sbjct: 205 RGIEGFKAAEVKREYLTLEEVKKLASTPCRYPVLKRAFLFSCLTGLRKSDIQKLTWSEIQ 264

Query: 219 N----NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274
                       +KTG +  +++     K L      KE  F         + +   W  
Sbjct: 265 KFGNFTRIVFNQKKTGGLEYLDITPQAEKYLGEHKNPKEPVFSGFTYGAWTSLELQRW-- 322

Query: 275 AKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
             +  AG+  N + H  R   A +  D GA  + +    G + +   + Y K  D+ +
Sbjct: 323 --SMNAGIQKNLTFHCGRHTFAVLMLDLGADIYTVSKLLGHRELSTTQIYAKVLDKNK 378


>gi|294142606|ref|YP_003558584.1| integrase/recombinase XerC [Shewanella violacea DSS12]
 gi|293329075|dbj|BAJ03806.1| integrase/recombinase XerC [Shewanella violacea DSS12]
          Length = 308

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 32/269 (11%), Positives = 82/269 (30%), Gaps = 22/269 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDF--------DYRKITTKHIRSGVESRKHTPSSAIQF 136
             L+ ++  ++     ++  K            +      +H+   +  +  +P S    
Sbjct: 17  RQLSAHTVRNYLYELHRVTDKLDASASFPISWSEISHEQIQHVLGQLHRQGLSPRSLSLT 76

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR---PWTKEDMQQFKSFWSEGSQPR 193
           L++++    + + +  +  NP  ++  PK+     +     +   + +  +      + +
Sbjct: 77  LSAVKQFCDFLLGEGVINANPAKNLSAPKQNKPLPKNMDLDSVTHLLEIDADDPLSVRDK 136

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAMT---- 248
              E    SGLR ++     V  ++  +       K      V +    +  +       
Sbjct: 137 AIMELFYSSGLRLAELAALDVLDIRFADRQVKVLGKGSKERIVPVGRCAIDAIQAWLTFR 196

Query: 249 ---PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGAT 303
              P   E  F+     ++              +  +N     H +R   AT   ++ A 
Sbjct: 197 EAIPCQDEALFVTAKGNRLAHRSIQARLAKWGQEQALNMRVHPHKLRHSFATHMLESSAD 256

Query: 304 AHELMATYGWKTVDQAETYTKGADRIRLG 332
              +    G   +   + YT   D   L 
Sbjct: 257 LRAVQELLGHANLSTTQIYT-SLDFQHLA 284


>gi|85859956|ref|YP_462158.1| phage integrase family protein [Syntrophus aciditrophicus SB]
 gi|85723047|gb|ABC77990.1| phage integrase family protein [Syntrophus aciditrophicus SB]
          Length = 364

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 57/308 (18%), Positives = 104/308 (33%), Gaps = 14/308 (4%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD 110
           L G   + ++           K L+ +Y       + A +S    +S   Q+    G+  
Sbjct: 40  LKGDIAEGKWFEKLPGDSYKFKDLMDKYMTEYSAVNKAASSYKRDKSIVTQLKSYFGEKY 99

Query: 111 YRKITTKHIRSGVESRKH---TPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKR 166
             ++T   I      R+    +  +    L +M   F  A+R+      NP   V++ + 
Sbjct: 100 LTELTPAMISDYKVKRRSDGVSSRTINYELITMSHAFNLAIREWGLANENPVSKVKKDRV 159

Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSI 224
             +  R  T E+         +  Q      F +++GLR S+        +       +I
Sbjct: 160 TNKIERWLTSEEETNLLKESPKWLQD--IIIFAIHTGLRQSEILDLKWSQVDMKRRTVTI 217

Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKE----TFFINNDKQKMNATQFSIWFKAKATKA 280
             QK   I T+ L +  M +L      +       F N    +         F     KA
Sbjct: 218 HEQKNRCIDTLPLNETAMTVLKNRHNPELPLEGYVFPNTLGDRKGNRLLLKAFYVALKKA 277

Query: 281 GV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT-KGADRIRLGIKNSRR 338
            + N   H +R   AT     GA  + +     WKTV   + Y     + +R  I+    
Sbjct: 278 NISNFRFHDLRHTFATRLIRKGADLYTVQKLGRWKTVTMVQRYAHHHTESLRAAIEMMDD 337

Query: 339 ISSVVDSD 346
           +   + ++
Sbjct: 338 VEKPIITN 345


>gi|170740412|ref|YP_001769067.1| tyrosine recombinase XerD [Methylobacterium sp. 4-46]
 gi|168194686|gb|ACA16633.1| tyrosine recombinase XerD [Methylobacterium sp. 4-46]
          Length = 309

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 48/272 (17%), Positives = 87/272 (31%), Gaps = 27/272 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSG---VESRKHTPSSAIQFLTS 139
              + N+  ++    D  +        D   +    +R+    + +R   PSSA + L+ 
Sbjct: 23  RGASANTLAAYRRDLDDYLAHLAAEGLDPASVAPAGVRAYVADLAARGLKPSSAARRLSC 82

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG---------- 189
           +R   ++   + +   +P   V  PKR     +  +  ++    +   E           
Sbjct: 83  IRGFHRFLYAEGHAPSDPTAPVSGPKRGRALPKVLSVAEVDTLLAVAKEAVARAPNPGEA 142

Query: 190 ---SQPRLAFEFLLYSGLRCSDSCRAGVQH-LQNNIFSIKTQKTGTIITVELPDGFMKLL 245
               +     E L  +GLR S+         L    F +   K G    V L D     +
Sbjct: 143 ARAQRLLCLLELLYATGLRVSELVSLPRAAALTKERFLVVRGKGGRERLVPLTDIARAAM 202

Query: 246 AMTPIGKET-----FFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATIS 297
           A             F  +++   +    F+   KA A  AG+     S H +R   A+  
Sbjct: 203 AAHLAHLAVPGPWLFPADSESGHLTRQAFARDLKAVAGAAGIRADRISPHVLRHAFASHL 262

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              GA    +    G   +   + YT   D  
Sbjct: 263 LQNGADLRVVQELLGHADISTTQIYTHILDER 294


>gi|319641219|ref|ZP_07995919.1| integrase [Bacteroides sp. 3_1_40A]
 gi|124107947|gb|ABM90616.1| integrase [Bacteroides uniformis]
 gi|145308091|gb|AAR05648.2| integrase [Bacteroides uniformis]
 gi|317387152|gb|EFV68031.1| integrase [Bacteroides sp. 3_1_40A]
          Length = 377

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 40/204 (19%), Positives = 72/204 (35%), Gaps = 16/204 (7%)

Query: 138 TSMRVLFKWAVRQEYVAINPCLSV---ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
             +      AVR E +  NP   +   E+ +         T E+++   +   +    + 
Sbjct: 167 RVLNGALNAAVRAEIIKSNPFTKISKSEKIRLPESKRSYMTIEEVRALIATPMKNESVKG 226

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT----QKTGTIITVELPDGFMKLLAMT-- 248
           A+ F  + GLR SD  +   + +  +    +     QKT   I + L    +K +     
Sbjct: 227 AYLFSCFCGLRISDIIKLQWKDVFVDRGQYRLSVSMQKTKEPIYLPLSPEALKWMPARGD 286

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHE 306
               +  F        +    +I  K  A  AG+NK  + H  R   AT+    GA  + 
Sbjct: 287 KTPDDHVFDL-----PSPAMVNILIKPWAKAAGINKRFTFHTARHTFATMMLTLGADLYT 341

Query: 307 LMATYGWKTVDQAETYTKGADRIR 330
                G   V   + Y K  ++ +
Sbjct: 342 TSKLLGHADVKMTQVYAKIINQKK 365


>gi|254478707|ref|ZP_05092078.1| tyrosine recombinase XerD [Carboxydibrachium pacificum DSM 12653]
 gi|214035394|gb|EEB76097.1| tyrosine recombinase XerD [Carboxydibrachium pacificum DSM 12653]
          Length = 290

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 38/248 (15%), Positives = 92/248 (37%), Gaps = 19/248 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
             L+ N+  S+    +Q +    +        +K T  +    ++ +  + ++  + L+S
Sbjct: 17  KRLSKNTLESYSRDVEQFLTYMNEHGINFCSAKKSTIVNYLYFLKQQGKSQATISRALSS 76

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195
           ++  + +   ++ +  +P   +  PK + +     T E +    SF      +G + +  
Sbjct: 77  IKAFYHYLFAKKKIEEDPSYGINAPKVEKKEPVTLTVEQVDMLLSFDFGKDEKGLRDKAL 136

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA------MTP 249
            E +  SGL+ S+     ++ +      I  + +G    + +    +  L         P
Sbjct: 137 IELMYASGLKVSEVISLKIEDVNLASGYIVVR-SGKERVIPIGSYAVAALQEYIEKGRKP 195

Query: 250 IGKE-TFFINNDKQKMNATQFSIWFKAKATKA--GVNKSAHGVRKFSATISADAGATAHE 306
              E   F+N   +++         K  A K   G++ + + +RK  A      GA    
Sbjct: 196 RKGEKALFLNLRGKRLTRQGCWKIIKEYADKISPGLSLTPNILRKSFAQHMLQNGADLKT 255

Query: 307 LMATYGWK 314
           +    G++
Sbjct: 256 VQEMLGYE 263


>gi|326403661|ref|YP_004283743.1| tyrosine recombinase XerD [Acidiphilium multivorum AIU301]
 gi|325050523|dbj|BAJ80861.1| tyrosine recombinase XerD [Acidiphilium multivorum AIU301]
          Length = 320

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 45/271 (16%), Positives = 85/271 (31%), Gaps = 21/271 (7%)

Query: 75  ISEYRKSA-HWGSLAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVESRKH 128
           I  + +S       A N+ +++++           R  G  +    +      G+ +   
Sbjct: 23  IEAFLESMVAERGAARNTILAYQADLADFAAFCASRGHGPAEADAASVADYLGGLATAGL 82

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           +  +  + L+S+R   ++ +R    A +P      PK      +  ++ ++    +  + 
Sbjct: 83  SARTQARRLSSLRQFQRFLLRDGQRADDPTALTSSPKLARTLPKTISEAEVDALLTAAAA 142

Query: 189 -----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGFM 242
                G       E L  +G+R S+        L  +  ++    K G    V L     
Sbjct: 143 MPGQAGRVAEAGLEILYATGMRISELLVLPANALSTDASALLIKGKGGRERIVPLSAAAR 202

Query: 243 KLLAMT-----PIGKETFFINND-KQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFS 293
              A              F        M    F+   K  A  AG++    S H +R   
Sbjct: 203 DAAARLREMNRKRPSRHLFPGRRMGFPMTRQAFARQLKRVAVMAGIHPARVSPHSLRHAF 262

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324
           AT     GA    L    G   +   + YT 
Sbjct: 263 ATHLLARGADLRSLQTLLGHADISTTQIYTH 293


>gi|242237763|ref|YP_002985944.1| site-specific tyrosine recombinase XerC [Dickeya dadantii Ech703]
 gi|242239427|ref|YP_002987608.1| site-specific tyrosine recombinase XerC [Dickeya dadantii Ech703]
 gi|242129820|gb|ACS84122.1| integrase family protein [Dickeya dadantii Ech703]
 gi|242131484|gb|ACS85786.1| integrase family protein [Dickeya dadantii Ech703]
          Length = 366

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 57/331 (17%), Positives = 110/331 (33%), Gaps = 32/331 (9%)

Query: 49  SALTGSTPKREYINSPRKKPTTLKWLI---SEYRKSAHWGSLAVNSRISFESYFDQIIRK 105
            AL            P   P +L  L+     +R+  +W    + ++   +  F     +
Sbjct: 9   DALLTVDDVYRKPIGPASDPKSLYALLLRFVAWRRERNWSETTLKTQTHHQYRFILWAAE 68

Query: 106 SGDFDYRKIT-------TKHIRSGVESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAIN 156
            G    R IT        +H+    +      +  +    L  + V F W  R   +  +
Sbjct: 69  RGLHYGRDITLPILEHYQRHLYQYRKPNGEPLSTRTQRSQLGPLVVWFGWMTRHHLLLAD 128

Query: 157 PCLSVERPKRKTEGI-RPWTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCR 211
           P   +  P+ +        +  D++Q  +        G + R   E L  +G+R  +   
Sbjct: 129 PASGLVLPRLEKRLPRHILSVADVEQVLALPDLTTLQGIRDRALMELLWSTGIRRGEVAV 188

Query: 212 AGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLL-----AMTP-----IGKETFFINN 259
             V  +    +I +I   K      + +    ++ L     A+ P           F+  
Sbjct: 189 LEVYSVDASRHIVTIVQGKGKKDRVIPVGQRALRWLTYYVQAVRPQLLVNPHCPALFVAL 248

Query: 260 DK-QKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTV 316
           D  + +     +         +G+ K  S H  R   AT   + GA    + A  G  +V
Sbjct: 249 DGVEGLTPNGITNLVSHYIKASGIAKWGSCHLFRHAMATQMLENGADLRWIQAMLGHASV 308

Query: 317 DQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
           +  + YT+ + R    +  S   +   DSD+
Sbjct: 309 ESTQIYTQVSIRALQAVHASTHPAEQPDSDE 339


>gi|172057600|ref|YP_001814060.1| integrase family protein [Exiguobacterium sibiricum 255-15]
 gi|171990121|gb|ACB61043.1| integrase family protein [Exiguobacterium sibiricum 255-15]
          Length = 347

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 47/322 (14%), Positives = 99/322 (30%), Gaps = 53/322 (16%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI--RSGVE------ 124
             I  Y       + +  +   +   FD   +   +     I  + I   + +E      
Sbjct: 32  DFIRSYIDHLASKNFSKATMRRYVYDFDSFFQFVAEASGESIQARDITQEAFLEIDGSGI 91

Query: 125 ---------SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
                    ++++ PS   + L++++ LF+  +    ++ NP   + RPK+        T
Sbjct: 92  AAYAEYLALTKQNAPSVINRKLSALQSLFRHLIDIGVLSENPVAKINRPKQAKRDPVYLT 151

Query: 176 KEDMQQF-------------KSFWSEGSQPRLA--FEFLLYSGLRCSDSCRAGVQHLQNN 220
           K +  +              ++   E  + R    F+ L YSG+R S+  +     +  +
Sbjct: 152 KREWDELMQLLPSNVEMNAREATHYERDRVRDITLFQLLGYSGMRLSEMTQLTWNAVDFH 211

Query: 221 IFSIKT-QKTGTIITVELPDGFMKLLAMTPI------GKETFFINNDKQKMNATQFSIWF 273
             +I+   K      + L       L                      + ++        
Sbjct: 212 EGTIRVIGKGNKERVIPLAKPVRVALRKFAAHYSLTMRGPEPIFQKQGKALSPRAVQHIL 271

Query: 274 KAKATKAGVNK--------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           K    +             + H +R   AT  A  G     +    G ++V   + Y   
Sbjct: 272 KRHVDRLRPVLPFLERKQITPHKLRHTFATRLATGGVDVLTIQQLLGHESVATTQVYAHI 331

Query: 326 ADRIRLGIKNSRRISSVVDSDD 347
            DR +      +R   + DS+ 
Sbjct: 332 GDREK------KRAIELFDSER 347


>gi|326773392|ref|ZP_08232675.1| tyrosine recombinase XerD [Actinomyces viscosus C505]
 gi|326636622|gb|EGE37525.1| tyrosine recombinase XerD [Actinomyces viscosus C505]
          Length = 311

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 46/277 (16%), Positives = 96/277 (34%), Gaps = 37/277 (13%)

Query: 85  GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVE--------SRKHTPSSA 133
             L+ ++  ++E    + +R     G    + ++   +   +E        +R    SSA
Sbjct: 16  RGLSPHTLSAYERDLGRYLRYLRSAGISAPQDVSRNDVAGFLEVLRTGSDGARPLASSSA 75

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-----SE 188
            + +T++R   K+ + +   + +P  +V  P+      +    +++ +            
Sbjct: 76  SRTVTAVRGWHKFLLAEGTTSEDPSATVRPPQPGRRLPKALGVDEVCRLLEAAGVDDSPV 135

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVEL-------PDG 240
             + R   E L  +G R S++    V  L  +   ++   K      V +        D 
Sbjct: 136 SLRDRALLEVLYATGARISEAVGLVVDDLDTDSRLLRLFGKGRKERVVPMGAYAWEALDA 195

Query: 241 F----MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---------NKSAH 287
           +      +LA    G    F+N   + ++        +  A +AG+           S H
Sbjct: 196 YLVRGRPVLAEKGRGVPQVFLNTLGRPLSRQSAWAVLQQAAERAGLIGTDGADERRISPH 255

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            +R   AT     GA    +    G  +V   + YTK
Sbjct: 256 TLRHSFATHLLAGGADVRVVQEMLGHASVTTTQIYTK 292


>gi|257085103|ref|ZP_05579464.1| phage integrase [Enterococcus faecalis Fly1]
 gi|256993133|gb|EEU80435.1| phage integrase [Enterococcus faecalis Fly1]
 gi|315168954|gb|EFU12971.1| tyrosine recombinase XerC [Enterococcus faecalis TX1341]
          Length = 299

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 39/267 (14%), Positives = 96/267 (35%), Gaps = 29/267 (10%)

Query: 85  GSLAVNSRISFE---SYFDQIIRKSGDFDY---RKITTKHIRSGVESRKHTPSSAIQFLT 138
              +  ++ +++    +F   ++ SG+ +Y     +  +   S +  ++++ +S  + + 
Sbjct: 18  RGYSEKTKKAYQEDIQHFFSFLKTSGNDNYLTVEHLDVRAYLSELYDQEYSRNSISRKIA 77

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRL 194
           S+R  +++ ++ E +  NP   V   K++    R + +++M               + + 
Sbjct: 78  SLRSFYQFLLKNEAIQENPFSYVHMKKKQLRLPRFFYEKEMDALFESAQGEQPLDLRNQA 137

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-ITVE------------LPDGF 241
             E L  +G+R S+     V  +      +     G     V             L +G 
Sbjct: 138 LLEVLYGTGIRVSECANLTVDAVDFQASVLLVHGKGNKDRYVPFGSFAQDALKDYLENGR 197

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQ----FSIWFKAKATKAGVNKSAHGVRKFSATIS 297
             L+          F+N+  +++  T      +   K  +  A ++   H +R   AT  
Sbjct: 198 ALLMTKYQKKHPYIFVNHHGEQITPTGIEYVLNQLIKKSSLNAEIH--PHMLRHTFATHL 255

Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324
            + GA    +    G   +   + Y  
Sbjct: 256 LNNGADMRTVQELLGHANLSTTQIYAH 282


>gi|326790507|ref|YP_004308328.1| integrase family protein [Clostridium lentocellum DSM 5427]
 gi|326541271|gb|ADZ83130.1| integrase family protein [Clostridium lentocellum DSM 5427]
          Length = 392

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 51/315 (16%), Positives = 103/315 (32%), Gaps = 54/315 (17%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK--SGDFDYRKITTKHIRSGV 123
           KK  TL  L+ ++  +    S+++ +   + S ++  I+    G  D +KI  + ++   
Sbjct: 62  KKRITLSDLMYDHLFTNTKASVSLGTFERYMSLYNTHIKDSALGKRDIQKILQRDVQQFF 121

Query: 124 ESRKHTPSSAIQFLT-SMRVLFKWAVRQEYVAINPCLSVERPKRKT--EGIRPWTKEDMQ 180
            S+    S ++  L   +   F   +  +++ INP   +  PK     + I   T E+ +
Sbjct: 122 NSKTELSSKSLSMLKYLLNQSFDHGIANQFIRINPMKKITLPKSTYVEKEIEVLTHEEQK 181

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ----------- 227
            F    +E     L F   L++G+R  +       ++   +++  +K             
Sbjct: 182 AFMGVVNESFYKML-FTVALHTGMRVGEIMALKWHNVDLIDHMIHVKESSRLVKEYDSEG 240

Query: 228 -----------KTGTII-TVELPDGFMKLLAMTPI-----GKETFFINNDKQKMNATQFS 270
                      KT   I  + +     + L            +  F N+   ++     +
Sbjct: 241 NGEDKVITKSPKTKAGIRDIPIHPSLSEELTAYKAEHNGQDDDYVFKNSKGNQIKYDSIA 300

Query: 271 IWFKAKATKAGV-----------------NKSAHGVRKFSATISADAGATAHELMATYGW 313
              K    KA +                   + HG+R   AT   + G     +    G 
Sbjct: 301 KAHKLLCEKAKIRPYTEIGSNGESIIKYKGITFHGIRHSFATRLIEQGVDVKTVSQLLGH 360

Query: 314 KTVDQA-ETYTKGAD 327
             V      Y    D
Sbjct: 361 TDVKITLNRYVHSTD 375


>gi|293380240|ref|ZP_06626321.1| putative tyrosine recombinase XerC [Lactobacillus crispatus 214-1]
 gi|290923207|gb|EFE00129.1| putative tyrosine recombinase XerC [Lactobacillus crispatus 214-1]
          Length = 302

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 41/261 (15%), Positives = 99/261 (37%), Gaps = 24/261 (9%)

Query: 88  AVNSRISFESYF---DQIIRKSGDFD----YRKITTKHIRSGVESRKHTPSSAIQFLTSM 140
           +  + +++++     ++   ++G F      R+   +     +  RK   SS ++ ++S+
Sbjct: 22  SAKTVLAYQTDLHEAERFWHENGGFPGWTKVRERDIQVYLQHLAERKLARSSQLRKMSSL 81

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLAF 196
              +++  R++ VAI+P   +   + + +  + + + +++Q             +    F
Sbjct: 82  HSFYRFLTRRKLVAIDPTQGITLRRGEKKLPQFFYQPELKQVFDSLKGNKPLTMRNLAMF 141

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-ITVELPDGFMKLL-----AMTP- 249
           E    +G+R S+     +  L  ++ +I     G     V   D   K L        P 
Sbjct: 142 ELFYATGMRVSEVSNLTLNQLDLDLQTILVHGKGNKDRYVAFDDKTKKSLIAYLENARPL 201

Query: 250 ----IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGAT 303
                 ++  F+NN    + +       +    +AG++     H +R   AT   + GA 
Sbjct: 202 LLKNDDEQHVFLNNQGTGITSRGIETVMQKTFNQAGISGKVHPHELRHSFATAMLNNGAD 261

Query: 304 AHELMATYGWKTVDQAETYTK 324
              +    G  ++   + YT 
Sbjct: 262 LRSVQELLGHSSLSATQIYTH 282


>gi|269961534|ref|ZP_06175897.1| tyrosine recombinase XerC [Vibrio harveyi 1DA3]
 gi|269833763|gb|EEZ87859.1| tyrosine recombinase XerC [Vibrio harveyi 1DA3]
          Length = 269

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 37/228 (16%), Positives = 79/228 (34%), Gaps = 19/228 (8%)

Query: 111 YRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170
            R++  K +R G+       SS    L+S+R  F + + +  ++ NP   V  P++K   
Sbjct: 21  VRQLAGKGMREGM-----KASSLATRLSSLRSFFDFLILRGEMSANPAKGVSAPRKKRPL 75

Query: 171 IRPWTKEDMQQFKSF---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT- 226
            +    +++ Q            + R   E +  +GLR ++     V+ +Q     ++  
Sbjct: 76  PKNLDVDEVNQLLEVNEDDPLAVRDRAMMELMYGAGLRLAELVSVDVRDVQLRSGELRVI 135

Query: 227 QKTGTIITVE--------LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKAT 278
            K      V         +         +   G+   F++    +++             
Sbjct: 136 GKGDKERKVPFSGMATEWVGKWLRVRGDLAAPGEPALFVSKLGTRISHRSVQKRMAEWGQ 195

Query: 279 KAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           K  V  + S H +R   AT   ++      +    G + +   + YT 
Sbjct: 196 KQSVASHISPHKLRHSFATHMLESSNNLRAVQELLGHENISTTQIYTH 243


>gi|58337280|ref|YP_193865.1| integrase-recombinase [Lactobacillus acidophilus NCFM]
 gi|227903866|ref|ZP_04021671.1| integrase-recombinase [Lactobacillus acidophilus ATCC 4796]
 gi|58254597|gb|AAV42834.1| integrase-recombinase [Lactobacillus acidophilus NCFM]
 gi|227868257|gb|EEJ75678.1| integrase-recombinase [Lactobacillus acidophilus ATCC 4796]
          Length = 302

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 39/275 (14%), Positives = 107/275 (38%), Gaps = 26/275 (9%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYF---DQIIRKSGDFD-YRKITTKHIRSGVE---SR 126
           L   Y ++      +  +  S+++     ++ ++++G ++ ++ IT + I+  ++    R
Sbjct: 10  LFISYLQNER--HYSSKTIASYKTDLLEVEKFLKENGGYNGWKNITERDIQLYLQHLSDR 67

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
           K   SS ++ ++S+   +++  R++ V ++P   +   + + +    + + +++Q     
Sbjct: 68  KLARSSQLRQMSSLHSFYRFLTRRKIVQVDPTQQITLRRGEKKLPEFFYEPEIKQVFDSL 127

Query: 187 ----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPD-- 239
                   +    F+    +G+R S+     +  +   + +I    K      V   D  
Sbjct: 128 SGDKPLTVRNLALFQLFYATGMRVSEVSSLTLNQIDLTMQTILVHGKGKKDRYVAFDDKT 187

Query: 240 --GFMKLLAMTPI------GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289
                K L +          +   F++N  + ++        +    +AG++     H +
Sbjct: 188 KRSLTKYLEIARPKLLKNEDEPHVFLSNLGKPISNRGIQYVMQKTFNQAGISGKVHPHEL 247

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           R   AT   + GA    +    G  ++   + YT 
Sbjct: 248 RHTFATAMINNGADLRSVQELLGHSSLSATQIYTH 282


>gi|309780244|ref|ZP_07674995.1| tyrosine recombinase XerC [Ralstonia sp. 5_7_47FAA]
 gi|308920947|gb|EFP66593.1| tyrosine recombinase XerC [Ralstonia sp. 5_7_47FAA]
          Length = 328

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 52/289 (17%), Positives = 97/289 (33%), Gaps = 40/289 (13%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIR----KSGDFDYRKITTKHIRSGVESR--- 126
           I+ Y  +  +   L+ ++  S+      + R     + + D  ++ + HIR  +      
Sbjct: 19  IAAYLDALKFERQLSPHTLESYTRELAVLQRLGAQHAANVDLTQLQSHHIRRMMAQLHGD 78

Query: 127 KHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQ 181
             +  S  + L++ R  FKW A+R   V  NP   V  PK      +  + E     M+Q
Sbjct: 79  GLSGRSIARALSAWRGWFKWMALRDAAVTANPVDGVRAPKSPKRLPKALSVEQAVALMEQ 138

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN------IFSIKTQ------KT 229
                 E  + R   E     GLR S+     ++H++           ++ +      K 
Sbjct: 139 LPGDDPETVRDRAVNELFYSCGLRLSELVSLDMRHVKAGAYESASWLDLEAREVQVLGKG 198

Query: 230 GTIITVELP-------------DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK 276
               TV +                 +      P      F++   +++   Q  +  K  
Sbjct: 199 SKRRTVPVGTKAAEALAAWLAVRAQLARPDAAPEDAHALFLSPRGKRLAQRQIQLRMKRN 258

Query: 277 ATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           A  AGV      H +R   AT    +      +    G  ++   + YT
Sbjct: 259 AIAAGVPADVHPHVLRHSFATHMLQSSGDLRAVQELLGHASIASTQVYT 307


>gi|325678336|ref|ZP_08157958.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
 gi|324109957|gb|EGC04151.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
          Length = 377

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 50/293 (17%), Positives = 95/293 (32%), Gaps = 44/293 (15%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--- 127
            +    E+ ++    +L   S    +   +++    G     KI  +HI+  V       
Sbjct: 69  FEAFAEEWLETYAKLNLRNTSYERMKQLRNRVYPAIGHMRMDKIKVRHIQQFVYDLAVNG 128

Query: 128 --------HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
                    +  + +  L+ +  +F +AV+ E +  NPC  V  PK + +    +T E +
Sbjct: 129 KSFKNGKPLSRKTVVHHLSFISDVFSYAVKMELLTDNPCRRVTVPKGEKKEKEIYTLEQV 188

Query: 180 QQFKSFW-SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----------------NNIF 222
           +Q  +       + R  F   +YSG R  +      + +                     
Sbjct: 189 EQLFNLLEDAPLKYRTFFTLAIYSGFRRGELLGLEWKDIDWDNCVISVKRTSNYTAEKGI 248

Query: 223 SIKTQKT-GTIITVELPDGFMKLLAMTPIGK--------------ETFFINNDKQKMNAT 267
              T KT  +  +++ P   M LL      +              +  F+  D + MN  
Sbjct: 249 YTDTTKTKKSQRSLKFPMVVMDLLRAFKAEQDEERERIGDKWQDYDRLFVKWDGRPMNNN 308

Query: 268 QFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
               WF     K     +  H +R F A+   + G  A  +    G   +   
Sbjct: 309 TPYFWFNEFCEKNNFPFRDIHSLRHFYASALINEGVDAAAVSGALGHSVISTT 361


>gi|196040606|ref|ZP_03107905.1| site-specific recombinase, phage integrase family [Bacillus cereus
           NVH0597-99]
 gi|196028396|gb|EDX67004.1| site-specific recombinase, phage integrase family [Bacillus cereus
           NVH0597-99]
          Length = 370

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 44/269 (16%), Positives = 86/269 (31%), Gaps = 36/269 (13%)

Query: 91  SRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFLTSMRVLFKW 146
           +    + Y   +II   G+    K+T+ H+++ V S +       +  + +  +R   + 
Sbjct: 86  TAKVLKGYLKSRIIPTLGNIKLAKLTSLHMQNYVNSLRDDGLKRGTIEKIIKIIRNSLEH 145

Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRC 206
           A+  E +  N     + PK   E +  W + ++Q F     + S+  + F   L +G+R 
Sbjct: 146 AIDLELITKNVAAKTKLPKGDKEELIVWNEHEVQSFLKAAQD-SRYSIVFHMALVTGMRQ 204

Query: 207 SDSCRAGVQHLQNNIFSIK--------------TQKTGTIITVELPDG-----FMKLLAM 247
            +      + +      +                 KT + +   L          K  A+
Sbjct: 205 GELLGLRWKDVDLEKGHLTISQTLSHDGKTFLLGGKTKSSLRKILLPASTVAKLKKHRAV 264

Query: 248 TPIGK----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATI 296
               K          +          +N         A   KA V K   H +R   AT+
Sbjct: 265 VLKEKLSQGEEYQDNDLVMCTPSGTPINPANVRRSLNALIKKAAVPKIRFHDLRHTHATL 324

Query: 297 SADAGATAHELMATYGWKTVDQA-ETYTK 324
               G     +    G   +    +TY+ 
Sbjct: 325 LLAKGVNVKVISERLGHSNIKITLDTYSH 353


>gi|300087795|ref|YP_003758317.1| integrase family protein [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
 gi|299527528|gb|ADJ25996.1| integrase family protein [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
          Length = 328

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 46/290 (15%), Positives = 100/290 (34%), Gaps = 47/290 (16%)

Query: 86  SLAVNSRISFES----------------YFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           +L+  +  ++++                Y +Q        D  K   +   + +  +   
Sbjct: 26  NLSPRTIRNYKNDIIGNQQKGEPHGFFQYLEQHRLSFP-SDVDKYVIRGYIAWLLEQGVV 84

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER----------PKRKTEGIRPWTKEDM 179
            SS ++ L+++R LF++ +R+E +  +P L V R           K         T ++M
Sbjct: 85  KSSVVRKLSAIRSLFRYLLREEIITESP-LPVTRKHGGRLSAFSIKLDKRLPSFLTVDEM 143

Query: 180 QQF----KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
           ++     ++    G + +   E +  +GLR S+     V  +      ++    G    +
Sbjct: 144 ERLLEAPETSKPVGLRDKAIMEMIYAAGLRISELSDIKVSQVDYYSRELRVTGKGQKERL 203

Query: 236 EL------------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
            +             +     LA      ++ F+N     ++           A  AG+ 
Sbjct: 204 VIIGQPAADAVKKYLEKARPKLAKAERATDSLFLNYRGGSLSVRSMQKLILRYARIAGIR 263

Query: 284 K--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330
           +    H +R   AT   D GA    +    G  ++   + YT    ++ R
Sbjct: 264 QEVHPHLLRHSFATHLLDGGADLRVVQELLGHSSLSTTQIYTHVSRNQAR 313


>gi|229545742|ref|ZP_04434467.1| site-specific recombinase XerD [Enterococcus faecalis TX1322]
 gi|229309192|gb|EEN75179.1| site-specific recombinase XerD [Enterococcus faecalis TX1322]
          Length = 299

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 39/267 (14%), Positives = 96/267 (35%), Gaps = 29/267 (10%)

Query: 85  GSLAVNSRISFE---SYFDQIIRKSGDFDY---RKITTKHIRSGVESRKHTPSSAIQFLT 138
              +  ++ +++    +F   ++ SG+ +Y     +  +   S +  ++++ +S  + + 
Sbjct: 18  RGYSEKTKKAYQEDIQHFFLFLKTSGNDNYLTVEHLDVRAYLSELYDQEYSRNSISRKIA 77

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRL 194
           S+R  +++ ++ E +  NP   V   K++    R + +++M               + + 
Sbjct: 78  SLRSFYQFLLKNEAIQENPFSYVHMKKKQLRLPRFFYEKEMDALFESAQGEQPLDLRNQA 137

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-ITVE------------LPDGF 241
             E L  +G+R S+     V  +      +     G     V             L +G 
Sbjct: 138 LLEVLYGTGIRVSECANLTVDAVDFQASVLLVHGKGNKDRYVPFGSFAQDALKDYLENGR 197

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQ----FSIWFKAKATKAGVNKSAHGVRKFSATIS 297
             L+          F+N+  +++  T      +   K  +  A ++   H +R   AT  
Sbjct: 198 ALLMTKYQKKHPYVFVNHHGEQITPTGIEYVLNQLIKKSSLNAEIH--PHMLRHTFATHL 255

Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324
            + GA    +    G   +   + Y  
Sbjct: 256 LNNGADMRTVQELLGHANLSTTQIYAH 282


>gi|282856243|ref|ZP_06265526.1| tyrosine recombinase XerC [Pyramidobacter piscolens W5455]
 gi|282586002|gb|EFB91287.1| tyrosine recombinase XerC [Pyramidobacter piscolens W5455]
          Length = 290

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 79/230 (34%), Gaps = 9/230 (3%)

Query: 104 RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163
           +++G  +      +     +    +  SS  + L++++    + + +  +A +P  S+  
Sbjct: 40  QETGPLEITTPLIRAFLRSLAGFGYANSSIARKLSAVKAFELYLLEKGLIAADPAASIRS 99

Query: 164 PKRKTEGIRPWTKEDMQQF-KSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNN 220
           P+      R  +++ +++  +  W      R     E +   G+R ++        +  +
Sbjct: 100 PRLPERLPRALSRDGIERLIQEAWKIKPCLRNGTILEVMYGCGVRVAELVSLRWDDVDVD 159

Query: 221 IFSIKTQKTG-TIITVELPDGFMKLLAMTPIGKET----FFINNDKQKMNATQFSIWFKA 275
              +K +  G     V       + L              F       +           
Sbjct: 160 ERWLKVRGKGDKERLVPFGRYAKEALTRWKAECLPEPGFLFPGKGGAAITVRTVHRLVVQ 219

Query: 276 KATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            A  AG+ N + H VR   AT   + GA+ + L    G +++   + Y K
Sbjct: 220 AARNAGLENVTPHSVRHSFATHMLEGGASLNVLQELLGHESLLTTQRYLK 269


>gi|225568371|ref|ZP_03777396.1| hypothetical protein CLOHYLEM_04448 [Clostridium hylemonae DSM
           15053]
 gi|225162819|gb|EEG75438.1| hypothetical protein CLOHYLEM_04448 [Clostridium hylemonae DSM
           15053]
          Length = 330

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 46/284 (16%), Positives = 103/284 (36%), Gaps = 17/284 (5%)

Query: 72  KWLIS--EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
            WL+   E+  S      +  +   +     +++    + + + IT  +I   + + K  
Sbjct: 50  SWLVDLEEFLMSKALEGKSPGTVKRYRYELYRLLSYI-NKNVKDITDGNISGYMRTYKAI 108

Query: 130 PSSAIQFLTSMRVLFK----WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
                Q L ++R ++     W   ++ +  NP   VE  K + +  +P+T E+ +     
Sbjct: 109 RQVTNQTLKNVRAVYSSFFIWLRDRDRIRKNPMALVEAIKVEQKIRKPYTDEERELLLRS 168

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDG---- 240
                + +   EF   + +R S+      + +      +     G    TV L D     
Sbjct: 169 CKT-LRDKAMMEFFYSTAVRVSELAALNREDVHFVSKDLIVMGKGNKERTVYLNDRTNMY 227

Query: 241 FMKLLAMTPIGKETFFINNDK--QKMNATQFSIWFKAKATKAGVNKS-AHGVRKFSATIS 297
             + L       +  F++  K   ++  T      +     AGV ++  H  R+ +AT +
Sbjct: 228 MKEYLESRTDSNQALFVSLKKPHGRLGKTGIEDIIRRTGQIAGVERAYPHRFRRTAATNA 287

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
            + G    E+    G   ++    Y    D+  +   + + +S+
Sbjct: 288 LNRGMPVQEVAQLLGHAKLETTMVYC-SVDQAGVKYHHQKYLSA 330


>gi|94495775|ref|ZP_01302355.1| integrase [Sphingomonas sp. SKA58]
 gi|94425163|gb|EAT10184.1| integrase [Sphingomonas sp. SKA58]
          Length = 310

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 49/295 (16%), Positives = 100/295 (33%), Gaps = 19/295 (6%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
             LI  + +        + N+ +++ +         G             +   +     
Sbjct: 6   AALIDRFLEMMAAERGASRNTLLAYRTDLTGAGGLLGGLAGASKEGLGTLATHWASLAGS 65

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM--------QQF 182
           S A +  +++R  + +   +   A NP +++ RP  +    +  +  ++        ++ 
Sbjct: 66  SVARKA-SALRAFYGFLEEEGLRADNPSVALPRPVTRRPLPKILSTTEVDRLFALIAERL 124

Query: 183 KSFWSEGSQPRLA--FEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPD 239
           +         RL+   E L  SGLR ++      + L  +  F I   K      V + D
Sbjct: 125 EVAHPAPLDLRLSALIELLYGSGLRATELVSLPRRALAADRPFLILKGKGARERLVPISD 184

Query: 240 GFMKLLAMTPI---GKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFS 293
                ++   +   G   +   + K  ++  +     KA A  AG+     S H +R   
Sbjct: 185 RARAAVSAWLVHVPGDSAWLFPSGKSHLSRIRLYQLVKALAGAAGIAPERVSPHVLRHAF 244

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
           AT   + GA    L A  G   +   + YT    R  + + N R   + +    P
Sbjct: 245 ATHLLEGGADLRALQAMLGHADIGTTQIYTHVDSRRLVELVNQRHPLATMAVRQP 299


>gi|294789666|ref|ZP_06754899.1| tyrosine recombinase XerC [Simonsiella muelleri ATCC 29453]
 gi|294482378|gb|EFG30072.1| tyrosine recombinase XerC [Simonsiella muelleri ATCC 29453]
          Length = 302

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 37/266 (13%), Positives = 82/266 (30%), Gaps = 16/266 (6%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHIRSGVESRKHTPSSA 133
           +  Y         + ++  ++     ++      +    +     +   +  R   P S 
Sbjct: 16  LDAYLTQLTQQGKSPHTLDAYRRDLIELANMLPENQQPTRNDVVRVLKQLSQRGQHPRSL 75

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS--- 190
            + LTS R   ++ V    ++ NP   ++ PK      +   +E + Q        S   
Sbjct: 76  ARKLTSWRQYAEYLVHLGELSSNPIAHIKAPKPPERLPKAIDREQINQMIDQDIPQSDDV 135

Query: 191 ---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-ITVELPDGFMKLLA 246
              +     E    SGLR ++     V  +  +   +     G     V L    +  + 
Sbjct: 136 LAIRDHAMIELFYGSGLRLAELHALNVDDVLLDAGWVMVSGKGKRQRQVPLTRPSIAAID 195

Query: 247 M------TPIGKETFFINNDKQKMNATQFSIWFKAKAT--KAGVNKSAHGVRKFSATISA 298
                     G+   F +    ++   Q +   +  +   +A  + S H +R   A+   
Sbjct: 196 AYLSTRYAVDGELALFTSRHGTRLCTRQIAKRLEIWSQNNQANQHISPHMLRHSYASHLL 255

Query: 299 DAGATAHELMATYGWKTVDQAETYTK 324
            A      +    G + +   + Y K
Sbjct: 256 QASRDVRAVQELLGHQNLSTTQIYAK 281


>gi|108760213|ref|YP_631219.1| phage integrase family site specific recombinase [Myxococcus
           xanthus DK 1622]
 gi|34222772|sp|P59818|XERC_MYXXA RecName: Full=Tyrosine recombinase xerC
 gi|122981099|sp|Q1D804|XERC_MYXXD RecName: Full=Tyrosine recombinase xerC
 gi|27804888|gb|AAO22922.1| integrase/recombinase [Myxococcus xanthus]
 gi|108464093|gb|ABF89278.1| site-specific recombinase, phage integrase family [Myxococcus
           xanthus DK 1622]
          Length = 300

 Score =  110 bits (274), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 48/282 (17%), Positives = 92/282 (32%), Gaps = 26/282 (9%)

Query: 69  TTLKWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHI----RSG 122
           T+L  L+ ++R         + ++  ++        R          ++  H       G
Sbjct: 2   TSLSPLLEKFRAHLEDEKGSSPHTVRNYLIDLVDFERYLVERMKLSLLSGTHAAIRGYLG 61

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
             S  H P+S  + L S++  +K+ VRQ+ +  +P   V+ PK      +    E++   
Sbjct: 62  TLSTDHAPASRARRLASIKSFYKYLVRQKLLPASPAKLVKSPKLPKTLPKVLPVEEVFAI 121

Query: 183 KSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGTIITVEL 237
                     G + R   E L   GLR S+ C   +  +           K      V +
Sbjct: 122 LDMPDVKTVLGLRDRAILELLYGGGLRISELCGLDLLDIDRSGRIVRVMGKGSKERLVPV 181

Query: 238 PDGFMKLLAMTPIGK-------------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284
               ++ L      +             E  F+N    ++     +        K  + +
Sbjct: 182 NAQSIRALEAYLARRGELLATIRKDQAPEAMFLNFRGGRLTPRSIARHLDTYVLKCALTR 241

Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             S H +R   AT     GA    +    G  ++   + YT+
Sbjct: 242 KVSPHAMRHSFATHLLGGGADIRSIQELLGHSSLSTTQRYTQ 283


>gi|320107747|ref|YP_004183337.1| integrase family protein [Terriglobus saanensis SP1PR4]
 gi|319926268|gb|ADV83343.1| integrase family protein [Terriglobus saanensis SP1PR4]
          Length = 311

 Score =  110 bits (274), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 42/290 (14%), Positives = 87/290 (30%), Gaps = 31/290 (10%)

Query: 64  PRKKPTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----K 117
           P   P T   L+ EY         L   +  S++                 +        
Sbjct: 2   PSPAPATNLQLVREYILYLRVERGLRPLTLESYQGDLYAFSEHLDSLHTSLLQATQENIA 61

Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
              + +        S  + L+ +R  ++W +  + +  +P L++E P       +   + 
Sbjct: 62  SFMAHLREHDQESRSIARKLSCLRGFYRWLLLDKRIHHDPTLNIESPASWKVLPKSLAES 121

Query: 178 DMQQFKSFWSEGSQ----------PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227
           ++++        +                  L   GLR ++ C   V+ L  +    + +
Sbjct: 122 EVREMLDRTGVAAHSQQAGALSLRDHALMNLLYAGGLRAAEICDLRVEDLHLDQQRAQVR 181

Query: 228 KTG-TIITVELPDGFMKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAK 276
             G     V L D  ++ L +              +   F++   + +         K+ 
Sbjct: 182 GKGDKERIVPLADTAVQALEVYLQRGRPQLVAKGLQRALFLSVRGKPLTNQTVWSIVKST 241

Query: 277 ATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
              A    S H +R   AT   + GA    +    G   +   + YT  A
Sbjct: 242 NQLA----SPHKLRHSCATHMVEHGADLRSVQTLLGHADIVTTQVYTHLA 287


>gi|320179493|gb|EFW54448.1| Phage integrase [Shigella boydii ATCC 9905]
          Length = 300

 Score =  110 bits (274), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 51/277 (18%), Positives = 95/277 (34%), Gaps = 21/277 (7%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHE---STFIPAYMSALTGSTPKREYINS 63
           LPP +     R+     Y     G+   L        +  I A +  L+ S  +      
Sbjct: 12  LPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELLSDSGRESLIDRI 68

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
                 TL   +  Y        +   + + + S    I RK  D     I+TK + + +
Sbjct: 69  KGADSITLHAWLDRYETILSERGIRPKTLLDYASKIRAIRRKLPDKPLTDISTKEVAAML 128

Query: 124 ESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
            +   +   +SA    +++  +F+ A+ + +VA NP  +    K +    R    E ++ 
Sbjct: 129 NTYVAEGKAASAKLIRSTLVDVFREAIAEGHVATNPVTATRTAKSEVRRSRLTANEYVEI 188

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP--- 238
           + +        RLA +  + +G R  D CR     + +N   I+  KTG  + + L    
Sbjct: 189 YHAAEPLPIWLRLAMDLAVITGQRVGDLCRMKWSDINDNHLHIEQGKTGAKLAIPLTLTI 248

Query: 239 --------DGFMKLLAMTPIGKETFFINNDKQKMNAT 267
                   D   K         ET   +     ++  
Sbjct: 249 DALNISLVDTLQK--CREASSSETIIASKHHDPLSPK 283


>gi|29376202|ref|NP_815356.1| phage integrase family site specific recombinase [Enterococcus
           faecalis V583]
 gi|227518833|ref|ZP_03948882.1| site-specific recombinase XerD [Enterococcus faecalis TX0104]
 gi|227553450|ref|ZP_03983499.1| site-specific recombinase XerD [Enterococcus faecalis HH22]
 gi|229549931|ref|ZP_04438656.1| site-specific recombinase XerD [Enterococcus faecalis ATCC 29200]
 gi|255972714|ref|ZP_05423300.1| phage integrase [Enterococcus faecalis T1]
 gi|256619143|ref|ZP_05475989.1| integrase [Enterococcus faecalis ATCC 4200]
 gi|256762579|ref|ZP_05503159.1| phage integrase [Enterococcus faecalis T3]
 gi|256853205|ref|ZP_05558575.1| site-specific recombinase [Enterococcus faecalis T8]
 gi|256961848|ref|ZP_05566019.1| phage integrase [Enterococcus faecalis Merz96]
 gi|257082471|ref|ZP_05576832.1| phage integrase [Enterococcus faecalis E1Sol]
 gi|257086664|ref|ZP_05581025.1| phage integrase [Enterococcus faecalis D6]
 gi|257416173|ref|ZP_05593167.1| integrase [Enterococcus faecalis AR01/DG]
 gi|257419375|ref|ZP_05596369.1| phage integrase [Enterococcus faecalis T11]
 gi|293382913|ref|ZP_06628831.1| tyrosine recombinase XerC [Enterococcus faecalis R712]
 gi|293389598|ref|ZP_06634055.1| tyrosine recombinase XerC [Enterococcus faecalis S613]
 gi|300860343|ref|ZP_07106430.1| tyrosine recombinase XerC [Enterococcus faecalis TUSoD Ef11]
 gi|307274878|ref|ZP_07556041.1| tyrosine recombinase XerC [Enterococcus faecalis TX2134]
 gi|307291916|ref|ZP_07571785.1| tyrosine recombinase XerC [Enterococcus faecalis TX0411]
 gi|312907617|ref|ZP_07766608.1| tyrosine recombinase XerC [Enterococcus faecalis DAPTO 512]
 gi|312910234|ref|ZP_07769081.1| tyrosine recombinase XerC [Enterococcus faecalis DAPTO 516]
 gi|29343665|gb|AAO81426.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis V583]
 gi|227073746|gb|EEI11709.1| site-specific recombinase XerD [Enterococcus faecalis TX0104]
 gi|227177426|gb|EEI58398.1| site-specific recombinase XerD [Enterococcus faecalis HH22]
 gi|229304944|gb|EEN70940.1| site-specific recombinase XerD [Enterococcus faecalis ATCC 29200]
 gi|255963732|gb|EET96208.1| phage integrase [Enterococcus faecalis T1]
 gi|256598670|gb|EEU17846.1| integrase [Enterococcus faecalis ATCC 4200]
 gi|256683830|gb|EEU23525.1| phage integrase [Enterococcus faecalis T3]
 gi|256711664|gb|EEU26702.1| site-specific recombinase [Enterococcus faecalis T8]
 gi|256952344|gb|EEU68976.1| phage integrase [Enterococcus faecalis Merz96]
 gi|256990501|gb|EEU77803.1| phage integrase [Enterococcus faecalis E1Sol]
 gi|256994694|gb|EEU81996.1| phage integrase [Enterococcus faecalis D6]
 gi|257158001|gb|EEU87961.1| integrase [Enterococcus faecalis ARO1/DG]
 gi|257161203|gb|EEU91163.1| phage integrase [Enterococcus faecalis T11]
 gi|291079578|gb|EFE16942.1| tyrosine recombinase XerC [Enterococcus faecalis R712]
 gi|291081215|gb|EFE18178.1| tyrosine recombinase XerC [Enterococcus faecalis S613]
 gi|295113045|emb|CBL31682.1| tyrosine recombinase XerC subunit [Enterococcus sp. 7L76]
 gi|300849382|gb|EFK77132.1| tyrosine recombinase XerC [Enterococcus faecalis TUSoD Ef11]
 gi|306496914|gb|EFM66462.1| tyrosine recombinase XerC [Enterococcus faecalis TX0411]
 gi|306508326|gb|EFM77433.1| tyrosine recombinase XerC [Enterococcus faecalis TX2134]
 gi|310626645|gb|EFQ09928.1| tyrosine recombinase XerC [Enterococcus faecalis DAPTO 512]
 gi|311289507|gb|EFQ68063.1| tyrosine recombinase XerC [Enterococcus faecalis DAPTO 516]
 gi|315027186|gb|EFT39118.1| tyrosine recombinase XerC [Enterococcus faecalis TX2137]
 gi|315029303|gb|EFT41235.1| tyrosine recombinase XerC [Enterococcus faecalis TX4000]
 gi|315034051|gb|EFT45983.1| tyrosine recombinase XerC [Enterococcus faecalis TX0017]
 gi|315145127|gb|EFT89143.1| tyrosine recombinase XerC [Enterococcus faecalis TX2141]
 gi|315147344|gb|EFT91360.1| tyrosine recombinase XerC [Enterococcus faecalis TX4244]
 gi|315150456|gb|EFT94472.1| tyrosine recombinase XerC [Enterococcus faecalis TX0012]
 gi|315158157|gb|EFU02174.1| tyrosine recombinase XerC [Enterococcus faecalis TX0312]
 gi|315160539|gb|EFU04556.1| tyrosine recombinase XerC [Enterococcus faecalis TX0645]
 gi|315169812|gb|EFU13829.1| tyrosine recombinase XerC [Enterococcus faecalis TX1342]
 gi|315172224|gb|EFU16241.1| tyrosine recombinase XerC [Enterococcus faecalis TX1346]
 gi|315575784|gb|EFU87975.1| tyrosine recombinase XerC [Enterococcus faecalis TX0309B]
 gi|315580436|gb|EFU92627.1| tyrosine recombinase XerC [Enterococcus faecalis TX0309A]
 gi|323480809|gb|ADX80248.1| tyrosine recombinase XerC [Enterococcus faecalis 62]
 gi|327535213|gb|AEA94047.1| tyrosine recombinase XerC [Enterococcus faecalis OG1RF]
          Length = 299

 Score =  110 bits (274), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 39/267 (14%), Positives = 96/267 (35%), Gaps = 29/267 (10%)

Query: 85  GSLAVNSRISFE---SYFDQIIRKSGDFDY---RKITTKHIRSGVESRKHTPSSAIQFLT 138
              +  ++ +++    +F   ++ SG+ +Y     +  +   S +  ++++ +S  + + 
Sbjct: 18  RGYSEKTKKAYQEDIQHFFSFLKTSGNDNYLTVEHLDVRAYLSELYDQEYSRNSISRKIA 77

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRL 194
           S+R  +++ ++ E +  NP   V   K++    R + +++M               + + 
Sbjct: 78  SLRSFYQFLLKNEAIQENPFSYVHMKKKQLRLPRFFYEKEMDALFESAQGEQPLDLRNQA 137

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-ITVE------------LPDGF 241
             E L  +G+R S+     V  +      +     G     V             L +G 
Sbjct: 138 LLEVLYGTGIRVSECANLTVDAVDFQASVLLVHGKGNKDRYVPFGSFAQDALKDYLENGR 197

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQ----FSIWFKAKATKAGVNKSAHGVRKFSATIS 297
             L+          F+N+  +++  T      +   K  +  A ++   H +R   AT  
Sbjct: 198 ALLMTKYQKKHPYVFVNHHGEQITPTGIEYVLNQLIKKSSLNAEIH--PHMLRHTFATHL 255

Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324
            + GA    +    G   +   + Y  
Sbjct: 256 LNNGADMRTVQELLGHANLSTTQIYAH 282


>gi|167036277|ref|YP_001671508.1| site-specific tyrosine recombinase XerC [Pseudomonas putida GB-1]
 gi|189030081|sp|B0KQ43|XERC_PSEPG RecName: Full=Tyrosine recombinase xerC
 gi|166862765|gb|ABZ01173.1| tyrosine recombinase XerC [Pseudomonas putida GB-1]
          Length = 299

 Score =  110 bits (274), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 36/259 (13%), Positives = 88/259 (33%), Gaps = 19/259 (7%)

Query: 85  GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLT 138
             ++ ++ + +    D++    ++ G  D++ +  + +R  +        +  S  + L+
Sbjct: 16  RQVSEHTLLGYRRDLDKVIAYCKEHGIADWQALQIQQLRQLIARLHHHGQSSRSLARLLS 75

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW-TKEDMQQFKSFWS---EGSQPRL 194
           ++R L+++  R+     +P   +  PK +    +   T   +Q             + + 
Sbjct: 76  AVRGLYRYLNREGLCQHDPATGLSAPKGERRLPKVLDTDRALQLLDGGVDDDFIARRDQA 135

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPI--- 250
             E    SGLR S+     + HL      ++   K G    + +     + L        
Sbjct: 136 ILELFYSSGLRLSELTNLDLDHLDLAAGLVQVLGKGGKARVLPVGRKAREALQAWYRLRG 195

Query: 251 ----GKETFFINNDKQKMNATQFSIWFKAK-ATKAGVNKSAHGVRKFSATISADAGATAH 305
                    FI     +++     +  KA    + G +   H +R   A+   ++     
Sbjct: 196 IGNPRDRAVFITRQGNRISPQAVRLRVKAAGERELGQHLHPHMLRHSFASHVLESSQDLR 255

Query: 306 ELMATYGWKTVDQAETYTK 324
            +    G   +   + YT 
Sbjct: 256 AVQELLGHADISTTQIYTH 274


>gi|57651821|ref|YP_186127.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus COL]
 gi|87162376|ref|YP_493842.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88194960|ref|YP_499760.1| site-specific recombinase [Staphylococcus aureus subsp. aureus NCTC
           8325]
 gi|151221374|ref|YP_001332196.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|161509418|ref|YP_001575077.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221142042|ref|ZP_03566535.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus str.
           JKD6009]
 gi|253731871|ref|ZP_04866036.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253733510|ref|ZP_04867675.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|258452551|ref|ZP_05700557.1| tyrosine recombinase xerC [Staphylococcus aureus A5948]
 gi|262048146|ref|ZP_06021033.1| hypothetical protein SAD30_1922 [Staphylococcus aureus D30]
 gi|262051314|ref|ZP_06023537.1| hypothetical protein SA930_2036 [Staphylococcus aureus 930918-3]
 gi|282920496|ref|ZP_06328217.1| tyrosine recombinase XerC [Staphylococcus aureus A9765]
 gi|284024245|ref|ZP_06378643.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus 132]
 gi|294848247|ref|ZP_06788994.1| tyrosine recombinase XerC [Staphylococcus aureus A9754]
 gi|304381184|ref|ZP_07363837.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|81694641|sp|Q5HGI0|XERC_STAAC RecName: Full=Tyrosine recombinase xerC
 gi|123003475|sp|Q2FZ30|XERC_STAA8 RecName: Full=Tyrosine recombinase xerC
 gi|123486192|sp|Q2FHI6|XERC_STAA3 RecName: Full=Tyrosine recombinase xerC
 gi|172048862|sp|A6QGF2|XERC_STAAE RecName: Full=Tyrosine recombinase xerC
 gi|189030085|sp|A8Z3T2|XERC_STAAT RecName: Full=Tyrosine recombinase xerC
 gi|57286007|gb|AAW38101.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus COL]
 gi|87128350|gb|ABD22864.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87202518|gb|ABD30328.1| site-specific recombinase, putative [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|150374174|dbj|BAF67434.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|160368227|gb|ABX29198.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253724281|gb|EES93010.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253728564|gb|EES97293.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|257859769|gb|EEV82611.1| tyrosine recombinase xerC [Staphylococcus aureus A5948]
 gi|259160689|gb|EEW45710.1| hypothetical protein SA930_2036 [Staphylococcus aureus 930918-3]
 gi|259163712|gb|EEW48267.1| hypothetical protein SAD30_1922 [Staphylococcus aureus D30]
 gi|269940743|emb|CBI49125.1| putative integrase/recombinase [Staphylococcus aureus subsp. aureus
           TW20]
 gi|282594158|gb|EFB99145.1| tyrosine recombinase XerC [Staphylococcus aureus A9765]
 gi|294825047|gb|EFG41469.1| tyrosine recombinase XerC [Staphylococcus aureus A9754]
 gi|302751075|gb|ADL65252.1| site-specific recombinase XerC [Staphylococcus aureus subsp. aureus
           str. JKD6008]
 gi|304340167|gb|EFM06108.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|315198492|gb|EFU28821.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           CGS01]
 gi|320140931|gb|EFW32778.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           MRSA131]
 gi|320144353|gb|EFW36119.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           MRSA177]
 gi|329313922|gb|AEB88335.1| Tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus
           T0131]
 gi|329727838|gb|EGG64289.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           21189]
          Length = 298

 Score =  110 bits (274), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 37/266 (13%), Positives = 94/266 (35%), Gaps = 22/266 (8%)

Query: 85  GSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVE---SRKHTPSSAIQFLTS 139
            + + ++  S++    Q  +  +    +      +  R+ +    S     +S  + +++
Sbjct: 16  RNFSEHTLKSYQDDLIQFNQFLEQEHLELNTFEYRDARNYLSYLYSNHLKRTSVSRKIST 75

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLA 195
           +R  +++ +  +   INP + +  PK++    + + +E+M+       E +    + R+ 
Sbjct: 76  LRTFYEYWMTLDENIINPFVQLVHPKKEKYLPQFFYEEEMEALFKTVEEDTSKNLRDRVI 135

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVE--------LPDGFMKLL 245
            E L  +G+R S+      Q +    N  ++   K      V         + +      
Sbjct: 136 LELLYATGIRVSELVNIKKQDIDFYANGVTV-LGKGSKERFVPFGAYCRQSIENYLEHFK 194

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATK-AGV-NKSAHGVRKFSATISADAGAT 303
            +     +   +N   + +              + AGV     H +R   AT   + GA 
Sbjct: 195 PIQSCNHDFLIVNMKGEAITERGVRYVLNDIVKRTAGVSEIHPHKLRHTFATHLLNQGAD 254

Query: 304 AHELMATYGWKTVDQAETYTKGADRI 329
              + +  G   +     YT  +++ 
Sbjct: 255 LRTVQSLLGHVNLSTTGKYTHVSNQQ 280


>gi|254449549|ref|ZP_05062986.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198263955|gb|EDY88225.1| phage integrase [Octadecabacter antarcticus 238]
          Length = 320

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 44/260 (16%), Positives = 88/260 (33%), Gaps = 23/260 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFD--YRKITTKHIRSGVESRKHTPSSAIQFLTSMRV 142
            +L   S+ S      +     G           K+ +  +     +  +  Q +T ++ 
Sbjct: 39  RNLGPASQSSHLRACKRFAAWLGRSPETATPDDVKYFQQYLVESGVSICTRNQTMTGVKF 98

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202
           LF+  +R+     +    +   K   +     +K+++++  +      + R+        
Sbjct: 99  LFRVTLRR----HDLVAEIFHLKEPVKIPLVLSKKEIKRILAMAPS-LKARVMLSLAYGC 153

Query: 203 GLRCSDSCRAGVQHLQNN--IFSIKTQKTGTIITVELPDGFMKLLAMT------------ 248
           G+R  +  R  V  + ++  I  I   K      V LP   + LL               
Sbjct: 154 GMRAGEVVRLKVGDIDSDQEIIRIVQSKGRKDRNVMLPSDILGLLRQWWKERPTGQDRDV 213

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHE 306
           P  +   F     + +++ Q S  FK  A +AG+ K  + H +R   AT   + G     
Sbjct: 214 PAPERNLFPGYRSKHLSSRQISRLFKQTAQEAGITKPVTLHTLRHSFATHLLERGVDIRV 273

Query: 307 LMATYGWKTVDQAETYTKGA 326
           + A  G   +     Y   A
Sbjct: 274 IQALLGHSKLTTTARYASVA 293


>gi|238020532|ref|ZP_04600958.1| hypothetical protein GCWU000324_00418 [Kingella oralis ATCC 51147]
 gi|237867512|gb|EEP68518.1| hypothetical protein GCWU000324_00418 [Kingella oralis ATCC 51147]
          Length = 294

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 41/264 (15%), Positives = 88/264 (33%), Gaps = 19/264 (7%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG---VESRKHTPSSAI 134
           Y       + + ++ I++E    ++          +   +  ++    +  R   P+S  
Sbjct: 11  YLTEQRQRNRSPHTLIAYERELRELANLLP--ATAQPARRDFQAAFRQLSQRGLHPASLA 68

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-----G 189
           + L++ R    + VRQ  +  NP   ++  K+     R   ++ +       +E      
Sbjct: 69  RALSAWRQYCDYLVRQGSLKTNPVQDIKALKKPQRLPRAIERDTLNALLDQPAESDDTLA 128

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG----FMKL 244
            + +   E L  SGLR ++     +  +  +   +    K      V L         + 
Sbjct: 129 LRDQAIAELLYGSGLRLAELAGLNLADVYLDAGWLNVHGKGSKQRQVPLTQSSVALLQQW 188

Query: 245 LAMTPIG--KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
           LA  P    +   F      ++ + Q +      A + G  +  S H +R   A     A
Sbjct: 189 LAQRPAQPHETALFTTQHGTRLGSRQIAKRLDNWAQQHGSPQHISPHMLRHSFAGHLLQA 248

Query: 301 GATAHELMATYGWKTVDQAETYTK 324
                 +    G  ++   + YTK
Sbjct: 249 SRDIRAVQDLLGHASLSSTQIYTK 272


>gi|206895665|ref|YP_002247136.1| site-specific integrase/recombinase XerD protein [Coprothermobacter
           proteolyticus DSM 5265]
 gi|206738282|gb|ACI17360.1| site-specific integrase/recombinase XerD protein [Coprothermobacter
           proteolyticus DSM 5265]
          Length = 289

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 44/259 (16%), Positives = 90/259 (34%), Gaps = 24/259 (9%)

Query: 72  KWLISEYRKSAHWGSL----AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127
           K L+ EY +   W  L    +  +  S+    D  +          I     +  +  + 
Sbjct: 20  KRLVEEYEQ---WLVLRKQASPRTVRSYLKDVDDFLAFVEQERSTDIEL--FKQFLHDKG 74

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK--TEGIRPWTKEDMQQFKSF 185
            +PS+  + L+++     +  RQ        L  ERPK K   + ++     D+ Q    
Sbjct: 75  LSPSTVARKLSAVSSFSAFLRRQGI-----ALEFERPKVKIPQKLMQVPNWNDLDQLVDE 129

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
             +  + RLA   +L+ GLR S+        + ++   ++  K G    + + +     +
Sbjct: 130 VQDH-EVRLALRMMLHCGLRASEVLELRWSDIGDDYMLVR-GKGGKQRMLPVSEAIRTDI 187

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAH 305
                     F +   +K +          + T+A +    H +R   AT   +  A   
Sbjct: 188 ESIKRKGSYVFCDKKGKKRSRVWLW-----RKTRAFLGTHPHILRHAFATELTNY-ADIR 241

Query: 306 ELMATYGWKTVDQAETYTK 324
            +  + G   +   + YT 
Sbjct: 242 VVQESLGHSDITTTQRYTH 260


>gi|259047877|ref|ZP_05738278.1| phage integrase family site-specific recombinase [Granulicatella
           adiacens ATCC 49175]
 gi|259035554|gb|EEW36809.1| phage integrase family site-specific recombinase [Granulicatella
           adiacens ATCC 49175]
          Length = 393

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 65/357 (18%), Positives = 134/357 (37%), Gaps = 38/357 (10%)

Query: 6   RLPPFVTKERTRHGKIIYYFRK--GHGRRI-RLPYPHESTFIP--AYMSALTGSTPKREY 60
           R+ P+    + ++G++ Y F+   G   +  +  Y     F    A  +AL     +   
Sbjct: 9   RIKPY----KKKNGQVYYQFKIYYGTNPKTGKKQYTTRRGFESVLAATTALQRLEVELMD 64

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHI 119
                K+  T + L +E+  +     +  ++  +  +YF   I+   GD+    IT +  
Sbjct: 65  TGLVVKQKFTYRELYNEWLVTYQ-KRVRPSTFQATVTYFKKHILPAFGDYYIDTITIQDC 123

Query: 120 RSGVESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR---KTEGIRPWT 175
           ++ V     + P S   +    +++FK+A +   +  NP   V+ PK    K + ++ + 
Sbjct: 124 QAQVNRWYSNYPKSTQSYKIYAQMIFKYAQKLNLIEKNPMSLVDLPKSGDFKDDKLKYYD 183

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----------------- 218
           +E + +F  +     +    F  L Y+GLRC ++       +                  
Sbjct: 184 RETLIRFLEYIEPFKEVYTFFYLLSYTGLRCGEAFALTWNDIDFRNHSISVNKTVARSME 243

Query: 219 NNIFSIKTQKTGTIITVELPDGFMKLLAMTP--IGKETF-FINNDKQKMNATQFSIWFKA 275
           +   S    K G   T+ +     +L++      G ET+ F N +    ++     W   
Sbjct: 244 DKYISQTKTKNGMR-TIRINGSLERLISEWKELSGNETYVFQNRNNSFYSSNTAVYWLNQ 302

Query: 276 KATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIR 330
                   + + HG R   A++ A+AGA   ++    G   +      YT   +  +
Sbjct: 303 ILEGTNFPRITPHGFRHTHASLLAEAGADLKDIQDRLGHGDIQTTANIYTHVTNNKK 359


>gi|107104381|ref|ZP_01368299.1| hypothetical protein PaerPA_01005457 [Pseudomonas aeruginosa PACS2]
 gi|116053429|ref|YP_793754.1| site-specific tyrosine recombinase XerC [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218894383|ref|YP_002443253.1| site-specific tyrosine recombinase XerC [Pseudomonas aeruginosa
           LESB58]
 gi|254243833|ref|ZP_04937155.1| site-specific recombinase Sss [Pseudomonas aeruginosa 2192]
 gi|296392138|ref|ZP_06881613.1| site-specific tyrosine recombinase XerC [Pseudomonas aeruginosa
           PAb1]
 gi|313106696|ref|ZP_07792914.1| site-specific recombinase [Pseudomonas aeruginosa 39016]
 gi|122256552|sp|Q02E82|XERC_PSEAB RecName: Full=Tyrosine recombinase xerC
 gi|254799351|sp|B7V5H1|XERC_PSEA8 RecName: Full=Tyrosine recombinase xerC
 gi|115588650|gb|ABJ14665.1| site-specific recombinase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126197211|gb|EAZ61274.1| site-specific recombinase Sss [Pseudomonas aeruginosa 2192]
 gi|218774612|emb|CAW30429.1| site-specific recombinase Sss [Pseudomonas aeruginosa LESB58]
 gi|310879416|gb|EFQ38010.1| site-specific recombinase [Pseudomonas aeruginosa 39016]
          Length = 303

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 39/288 (13%), Positives = 97/288 (33%), Gaps = 24/288 (8%)

Query: 85  GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIR---SGVESRKHTPSSAIQFLT 138
             ++ ++   +     +I+    K+G  D+  + T+ +R   + +  +  +  S  + L+
Sbjct: 16  RQVSAHTLDGYRRDLLKILALAEKAGLSDWNALDTRSLRTFVARLHQQGQSSRSLARLLS 75

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRL 194
           + R L+++ +R+     +P   +  PK   +  R    +   Q      E      + + 
Sbjct: 76  ATRGLYQYLLREGRCRHDPANGLSAPKSPRKLPRTLDADRALQLLDGAVEDDFIARRDQA 135

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-VELPDGFMKLLAM------ 247
             E    SGLR S+     ++ L      ++ +  G  +  + +     + L        
Sbjct: 136 LLELFYSSGLRLSELVGLDLEWLDLKEGLVRVRGKGNKVRELPVGKAARQALEAWLPLRA 195

Query: 248 -TPIGKETFFINNDKQKMNATQFSIWFKAK-ATKAGVNKSAHGVRKFSATISADAGATAH 305
                    FI    +++      +  +     + G +   H +R   A+   ++     
Sbjct: 196 QAAPEDGAVFIGRGGKRLTPRAIQLRVRQAGVRELGQHLHPHMLRHSFASHLLESSGDLR 255

Query: 306 ELMATYGWKTVDQAETYT-----KGADRIRLGIKNSRRISSVVDSDDP 348
            +    G   +   + YT       A         ++R  +    +DP
Sbjct: 256 AVQELLGHADIATTQIYTHLDFQHLASVYDRAHPRAKRKGNADGGNDP 303


>gi|50122313|ref|YP_051480.1| site-specific tyrosine recombinase XerC [Pectobacterium
           atrosepticum SCRI1043]
 gi|49612839|emb|CAG76289.1| probable integrase/recombinase protein [Pectobacterium atrosepticum
           SCRI1043]
          Length = 340

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 46/308 (14%), Positives = 100/308 (32%), Gaps = 32/308 (10%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI---IRKSG 107
           +T   P             TL+   + Y       + +  +   +            + G
Sbjct: 1   MTKPKPPSPEALYLSSLSQTLRQYTTAYLAHLTATNHSPRTVEGYGERLRPFVTWCEERG 60

Query: 108 DFDYRKITTK---------HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158
                +++           H     + +       +  LTS+R+LF+W +++ ++  NP 
Sbjct: 61  LTQAAQVSLAVLEAYQRHLHGYRKADGKPLAQGGQLNRLTSIRMLFRWLLQRHHILYNPA 120

Query: 159 LSVERPKRKTEGI-RPWTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAG 213
             +  PK +     +  ++E+ +            G + R   E L  +GLR S+     
Sbjct: 121 EQMTLPKAEKRLPAQILSEEETEAVMDAQDTETLTGLRNRAVLEMLWSTGLRRSELAGLM 180

Query: 214 VQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAM----------TPIGKETFFINNDK 261
           +  +     +  ++  K      V +    +  +            T       F+    
Sbjct: 181 LDDVDVGRGVLVVRQGKGNKDRVVPVGLRALVWVQRYLDAVRPRLTTKHDSGALFVTIWG 240

Query: 262 QKMNATQFSIWF-KAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           + +     +I    A   +A + K+   H  R   AT   + GA    + A  G + ++ 
Sbjct: 241 KTLGRATLTILAGSAIREQAHLKKAGACHVFRHSMATQMLENGADTRYIQAILGHEKLET 300

Query: 319 AETYTKGA 326
            + YT+ A
Sbjct: 301 TQIYTRVA 308


>gi|160947529|ref|ZP_02094696.1| hypothetical protein PEPMIC_01463 [Parvimonas micra ATCC 33270]
 gi|158446663|gb|EDP23658.1| hypothetical protein PEPMIC_01463 [Parvimonas micra ATCC 33270]
          Length = 324

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 38/210 (18%), Positives = 83/210 (39%), Gaps = 18/210 (8%)

Query: 135 QFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----- 188
           + +++++  FK+     E +  NP   +E PK +       T  + ++  +   E     
Sbjct: 99  RKISAIKSWFKYLHNTVELINKNPAEKLELPKLQKRNPVYLTLSESEKVINSIKEEKNEF 158

Query: 189 -GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD----GFMK 243
             ++        L  GLR S+     ++ ++++  S+  +     I V L +        
Sbjct: 159 NRTRDLCIILIFLTCGLRISELTGINIESIKDDKLSVIGKGNKERI-VFLNENCIYAIKS 217

Query: 244 LLAMTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISA 298
            L + P  K T   F+++ K++++     +  K     AG++    + H +R  +AT+  
Sbjct: 218 YLQLRPCTKNTTALFLSSHKKRISNRSIQLRLKKYILLAGLDPKIYTPHKLRHTAATLMY 277

Query: 299 DAG-ATAHELMATYGWKTVDQAETYTKGAD 327
             G      + +  G  +V   + YT   D
Sbjct: 278 KYGDVDIRTIQSILGHTSVATTQIYTHLDD 307


>gi|225850417|ref|YP_002730651.1| phage integrase family protein [Persephonella marina EX-H1]
 gi|225645629|gb|ACO03815.1| phage integrase family protein [Persephonella marina EX-H1]
          Length = 292

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 48/299 (16%), Positives = 101/299 (33%), Gaps = 42/299 (14%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH---IRSGVESRKHTPS 131
             E   S      +  +  ++ +   Q ++  GD D  +IT       R  +++ +   S
Sbjct: 6   CVELYLSYI-SDRSAYTVRNYRTDLKQFVQSVGDKDITEITKADIAKFRMFLQANRRKSS 64

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           +  + L S+   F++ +  E ++ +P     RPK   +     + E++Q+      E   
Sbjct: 65  TIARKLASVNSFFEYLIDLELISSSPVSKSHRPKVSQKIPSSLSNEEIQKVLKSC-ENLL 123

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHL---QNNI-------------------FSIKTQKT 229
            +     +L +G+R S+        +   ++                       IK  K 
Sbjct: 124 EKTVIVLMLTTGIRSSELLSIRRSDILIEKDGRTFAPDTILENYTDGSEVAYIKIK-GKG 182

Query: 230 GTIITVEL----PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS 285
           G    V +     +  ++ L       E  F        +            +++G+   
Sbjct: 183 GKERVVPVSGKPLNILLQYLD--KNRDERLF------PFSYHTLRRLISNIGSRSGIPLH 234

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
            H +R  +ATI+  +GA    +    G  +      Y K        +K +R +S  +D
Sbjct: 235 PHKLRHTAATIALKSGAELRVIQELLGHASPLTTARYAKVGHEQL--VKATRTLSESID 291


>gi|242280181|ref|YP_002992310.1| integrase family protein [Desulfovibrio salexigens DSM 2638]
 gi|242123075|gb|ACS80771.1| integrase family protein [Desulfovibrio salexigens DSM 2638]
          Length = 319

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 43/261 (16%), Positives = 93/261 (35%), Gaps = 24/261 (9%)

Query: 88  AVNSRISFESYFDQIIRKSGDFD-----YRKITTKHIRSGVES---RKHTPSSAIQFLTS 139
           +  +  S+     Q                KIT+  +R+ +     ++   S+  + L+S
Sbjct: 29  SAATLRSYAKDISQFEEFLETRKKTLAVPEKITSDLVRAFLAKLHGQRLAKSTMSRKLSS 88

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFWSEGSQPRLA 195
           +R  FK+  +  ++  +P + +  PK++    R    +     M           +    
Sbjct: 89  LRSFFKYMTKHRFIQNDPMVGIRNPKQEIRHPRSLNVDQAVNLMDAHVGDEPADKRDLAL 148

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-ELPDGFMKLLA-------- 246
            E L  SGLR S++    +  +  +   ++    G    +  L D   K +         
Sbjct: 149 AEMLYGSGLRVSEAITLDLFDIDTSSGVVRVSGKGNKERLSPLSDAACKAVNDYLAVRAE 208

Query: 247 -MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGAT 303
               + ++  F+ N   ++N  Q +      A  AG+++    H +R   A+    +GA 
Sbjct: 209 LGPALEEQALFVGNRGGRINRRQVNRILARMAEGAGLHEGVHPHMLRHSFASHMLQSGAD 268

Query: 304 AHELMATYGWKTVDQAETYTK 324
              +    G + +   + YT 
Sbjct: 269 MRSVQELLGHEHLSTTQRYTH 289


>gi|325063103|gb|ADY66793.1| tyrosine recombinase xerD [Agrobacterium sp. H13-3]
          Length = 331

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 45/307 (14%), Positives = 99/307 (32%), Gaps = 52/307 (16%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTK-----HIRSGVESRKHTPSSAIQFLTS 139
              A N+  S+E     +    G      +           + + ++    +S  + L+S
Sbjct: 25  RGAAANTLSSYERDLSDLREFLGGRGQSLMEAATADLSAYLTHLSTQGFAATSQARRLSS 84

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS--------- 190
           MR  +++   +     +P  +++ PK+     +  +  D+ +     +E +         
Sbjct: 85  MRQFYRFLYSEGLRGDDPTGTIDAPKKGLTLPKTMSVADVTKLLGIAAEEAALTGPGQLA 144

Query: 191 --QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAM 247
             +  L  E L  +G+R S+     V+ L+    F +   K      V L    ++ +  
Sbjct: 145 RIRMHLLLELLYATGMRVSELVSLPVKVLRQEGRFLMIRGKGNKDRMVLLSRAAIEAMEK 204

Query: 248 TPIGKETFFINNDKQKMNATQ-----------------------FSIWFKAKATKAGVN- 283
               +++      +   +  +                       F+   K  A +AG+N 
Sbjct: 205 YDAARKSLVPEKSRTPASPKKADSPESPWLFPSNSKEGHLPRQVFARDLKDIAIRAGLNP 264

Query: 284 --KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
              S H +R   A+     GA    +    G   +   + YT   +          R+  
Sbjct: 265 SAVSPHVLRHAFASHLLQNGADLRAVQELLGHSDISTTQIYTHVLE---------ERLQE 315

Query: 342 VVDSDDP 348
           +V +  P
Sbjct: 316 LVQTHHP 322


>gi|329963640|ref|ZP_08301114.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
 gi|328528050|gb|EGF55031.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
          Length = 379

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 87/224 (38%), Gaps = 14/224 (6%)

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINP---CLSVERPKRKTEGIRPWTKEDMQ 180
           E +K   ++ + +   +R     AV +EY+A NP     S E+PKR+       T ++++
Sbjct: 154 EEKKLHANTQLHYFKMLRYCLNHAVSEEYIACNPIDKMKSDEKPKRRKADREYLTIDELR 213

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-----NNIFSIKTQKTGTIITV 235
                    S  + AF F  + GLR  D      + +      N   +I  QKT   I++
Sbjct: 214 YLVRTPFYNSLLKKAFLFSCFCGLRHCDIVALEWKDIHYDTNGNASINIVQQKTHEAISL 273

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI-WFKAKATKAGV--NKSAHGVRKF 292
            L    +K L      ++T   +   + + +   S       A +AG+  + + H  R  
Sbjct: 274 PLSPEAVKYLPNREKAQDT---DKIFKGLISLGRSNEILDRWAKQAGILKHVTFHVARHT 330

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
            AT+    GA  + +    G   +   + Y K  D  ++     
Sbjct: 331 HATMMLTLGADLYTISKLLGHTNIQTTQIYAKLVDESKMKAIAL 374


>gi|146297662|ref|YP_001181433.1| phage integrase family protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145411238|gb|ABP68242.1| phage integrase family protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 332

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 42/279 (15%), Positives = 89/279 (31%), Gaps = 25/279 (8%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           T K  +  + ++    ++  +++  +       +R  G+    K+    I++   +   T
Sbjct: 37  TFKEFVDYWFEAYASTAVKPSTQKRYRQLLKPALRAIGNKPLNKVKPLDIQNIYIALAGT 96

Query: 130 PSS--AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            S+   ++    +  +FK A   EY++ NP   V  P  + +    W  E  ++F     
Sbjct: 97  QSNCTILKLHRLLHEIFKHAQMWEYISDNPVKKVVPPTPEKKVFDVWDVETAKRFLEIIK 156

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---------------NNIFSIKTQKTGTI 232
           +      A    L++G+R  +        +                  + ++  +   + 
Sbjct: 157 DEPIYYPAL-IALHTGMRAGEILSLKWCDVNFETRVISIVKSERKNRGLKTVNLKTKTSK 215

Query: 233 ITVELPDGFMKLLA-----MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SA 286
             V + D   K L        P   +          +     S  FK    K        
Sbjct: 216 RAVYMNDILYKELKNLYEITKPKPDDFVCPRLPTGNLTVNYLSRKFKKLVKKHNFPLIRF 275

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTK 324
           H +R   AT+    G     +    G   +   A+TY+ 
Sbjct: 276 HDLRHTFATLMLSLGVNTKIVAEILGHSDIKLTADTYSH 314


>gi|114049118|ref|YP_739668.1| tyrosine recombinase XerC [Shewanella sp. MR-7]
 gi|123131002|sp|Q0HQJ4|XERC_SHESR RecName: Full=Tyrosine recombinase xerC
 gi|113890560|gb|ABI44611.1| tyrosine recombinase XerC [Shewanella sp. MR-7]
          Length = 299

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 30/265 (11%), Positives = 88/265 (33%), Gaps = 19/265 (7%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-FDYRKITTKHIR---SGVESRKHTPS 131
             Y +S     L+ ++  ++     +      +  D   +  +H +   + +  +  +P 
Sbjct: 13  ETYMQSER--QLSAHTVRNYMYELQRGSELLPEGVDLLNVGREHWQQVLAKLHRKGLSPR 70

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR---PWTKEDMQQFKSFWSE 188
           S   +L++++   ++ +R   + +NP   +  PK+     +     +   +   +     
Sbjct: 71  SLSLWLSAIKQWGEFLLRSGVIELNPAKGLSAPKQAKPLPKNIDVDSISHLLAIEGNDPL 130

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM 247
             + +   E    SGLR ++     +  +Q +   ++   K      V +    ++ ++ 
Sbjct: 131 TLRDKAIMELFYSSGLRLAELAALDLSSVQYDQHEVRVLGKGNKERIVPVGRYAIEAISA 190

Query: 248 T-------PIGKETFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSAHGVRKFSATISA 298
                          F+    ++++                  +    H +R   AT   
Sbjct: 191 WLKCRKQISCEDNALFVTEKGKRLSHRSIQARMSKWGQEQALSMRVHPHKLRHSFATHML 250

Query: 299 DAGATAHELMATYGWKTVDQAETYT 323
           ++ A    +    G + +   + YT
Sbjct: 251 ESSADLRAVQELLGHENLSTTQIYT 275


>gi|206599577|ref|YP_002242016.1| gp33 [Mycobacterium phage Brujita]
 gi|206282726|gb|ACI06247.1| gp33 [Mycobacterium phage Brujita]
 gi|302858513|gb|ADL71260.1| gp33 [Mycobacterium phage island3]
          Length = 297

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 48/268 (17%), Positives = 97/268 (36%), Gaps = 5/268 (1%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           +++ +R      SL+  +     +   ++    G         + +    E    +  + 
Sbjct: 1   MVNRWRTWQFAQSLSARTVEERVATVRRMAAWCGVEPEFAQVEQIVSWLAEGGNWSARTR 60

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
             +  ++   F W  +Q +   NP + + RPKR     RP +  D+Q+  +      + +
Sbjct: 61  WTYYGALSAWFLWLQQQGHRHDNPMVMIGRPKRPKSVPRPVSNLDVQRLLAV-RAHKRTK 119

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252
                  + GLR  +  +   +HL         T K     T+ L    +++    P  +
Sbjct: 120 AMILLAAFQGLRVHEIAQIKGEHLDLIERTMTVTGKGNVTATLPLHHRVVEIAYQMPR-R 178

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYG 312
             +F   D+        S   K    +AGV  SAH +R +  T   +AG     +     
Sbjct: 179 GHWFPGPDRGHQRRESVSGTIKEAMIRAGVVGSAHCLRHWFGTALLEAGVDLRTVQELMR 238

Query: 313 WKTVDQAETYTKGADRIRLGIKNSRRIS 340
            +++   E YT+  D+ R   +   R+ 
Sbjct: 239 HQSLTSTEIYTRVTDQRR--AEGIERLD 264


>gi|302332858|gb|ADL23051.1| site-specific recombinase XerC [Staphylococcus aureus subsp. aureus
           JKD6159]
          Length = 298

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 37/266 (13%), Positives = 93/266 (34%), Gaps = 22/266 (8%)

Query: 85  GSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVE---SRKHTPSSAIQFLTS 139
            + + ++  S++    Q  +  +           +  R+ +    S     +S  + +++
Sbjct: 16  RNFSEHTLKSYQDDLIQFNQFLEQEHLQLNTFEYRDARNYLSYLYSNHLKRTSVSRKIST 75

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLA 195
           +R  +++ +  +   INP + +  PK++    + + +E+M+       E +    + R+ 
Sbjct: 76  LRTFYEYWMTLDENIINPFVQLVHPKKEKYLPQFFYEEEMEALFKTVEEDTSKSLRDRVI 135

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVE--------LPDGFMKLL 245
            E L  +G+R S+      Q +    N  ++   K      V         + +      
Sbjct: 136 LELLYATGIRVSELVNIKKQDIDFYANGVTV-LGKGSKERFVPFGAYCRQSIENYLEHFK 194

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATK-AGV-NKSAHGVRKFSATISADAGAT 303
            +     +   +N   + +              + AGV     H +R   AT   + GA 
Sbjct: 195 PIQSCKHDFLIVNMKGEAITERGVRYVLNDIVKRTAGVSEIHPHKLRHTFATHLLNQGAD 254

Query: 304 AHELMATYGWKTVDQAETYTKGADRI 329
              + +  G   +     YT  +++ 
Sbjct: 255 LRTVQSLLGHVNLSTTGKYTHVSNQQ 280


>gi|260101613|ref|ZP_05751850.1| integrase/recombinase XerC [Lactobacillus helveticus DSM 20075]
 gi|260084576|gb|EEW68696.1| integrase/recombinase XerC [Lactobacillus helveticus DSM 20075]
          Length = 302

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 36/237 (15%), Positives = 86/237 (36%), Gaps = 21/237 (8%)

Query: 107 GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
           G  + ++   +     +  RK   SS  + ++S+   F++  R++++ I+P   +   + 
Sbjct: 48  GWKNVQERDIQIYLQNLADRKLVRSSQARQMSSLHSFFRFLTRRKFIKIDPTQGITLRRG 107

Query: 167 KTEGIRPWTKEDMQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222
           + +    +   +++Q             +    FE    +G+R S+     ++ +  N+ 
Sbjct: 108 EKKLPEFFFGNELKQVFDSLKGNKPLTMRNLALFELFYATGMRVSEVSNLTLRQIDLNLQ 167

Query: 223 SIKTQKTGTI-------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF 269
           +I     G               +   L D    LL      ++  F++N    ++    
Sbjct: 168 TILVHGKGNKDRYVAFDDHTKKSLVRYLEDARPNLLKDET--EQHVFLSNLGNPLSKRGI 225

Query: 270 SIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
               +    +AG++     H +R   AT   + GA    +    G  ++   + YT 
Sbjct: 226 EYVMQKTFNQAGISGKVHPHELRHTFATAMLNNGADLRSVQELLGHSSLSATQIYTH 282


>gi|89898086|ref|YP_515196.1| site-specific tyrosine recombinase XerD [Chlamydophila felis
           Fe/C-56]
 gi|89331458|dbj|BAE81051.1| integrase/recombinase [Chlamydophila felis Fe/C-56]
          Length = 298

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 41/267 (15%), Positives = 87/267 (32%), Gaps = 29/267 (10%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR---SGVESRKHTPSSAIQFLTSMR 141
             L+ NS  ++       ++ S      +I+   +      +  R+ + S+  + L +++
Sbjct: 22  RGLSRNSISAYSQDITLFLKISAITSIEEISQDSVYLFVQQLHKRQESESTLARRLIALK 81

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-------EGSQPRL 194
           V F++    E +   P   +E PK         T +++    +            ++   
Sbjct: 82  VFFRFLKETELLDHPP--LIEHPKIWKRLPSVLTPKEVDALLAIPKTSETSPMISARDSA 139

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM------- 247
               L  +G+R S+ C   +  + ++   + T K      V L +   K +         
Sbjct: 140 ILHTLYSTGIRVSELCGLCIGDVSDDFLRV-TGKGSKTRLVPLGERACKTIDAYLCPFRE 198

Query: 248 ----TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATISADA 300
                   +   F++    K+  +         A +  +     S H +R   AT   D 
Sbjct: 199 TFQKQRPEEHHLFLSVRGHKLERSCVWRRIHHYAKQ--ITHKQVSPHSLRHAFATHLLDN 256

Query: 301 GATAHELMATYGWKTVDQAETYTKGAD 327
            A    +    G   +   E YT  A 
Sbjct: 257 KADLRVIQEMLGHARIASTEIYTHVAS 283


>gi|150009561|ref|YP_001304304.1| site-specific recombinase [Parabacteroides distasonis ATCC 8503]
 gi|149937985|gb|ABR44682.1| site-specific recombinase [Parabacteroides distasonis ATCC 8503]
          Length = 387

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 48/295 (16%), Positives = 108/295 (36%), Gaps = 32/295 (10%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIR------KSGDFD----------YRKITTK 117
           L+ +Y +S        +++ +  S    + R      + G  D                +
Sbjct: 96  LLRDYIRSFAETK-GKSTQQNLNSLVYHLERSKGTDIQIGKVDKYYIMDFIEYLEDAQIE 154

Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP---- 173
           H +     +    S A+ F   ++++   AV  + + +NP LS+++  R +    P    
Sbjct: 155 HTQRNKGRKLSKNSQAMYF-KCLKMVLDEAVSDDIIPLNPILSIKKKYRPSAEKAPKREF 213

Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-----NNIFSIKTQK 228
            T++++++F          + AF     +GLR  D  +    ++          S+  +K
Sbjct: 214 LTEDELRRFAGTDHPNELLKRAFMIGCLTGLRHCDIKQMKWSNIGVVKNGIECISLVQEK 273

Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286
           T   + + L +   K L           + +    +  +  +      A KAG+NK  + 
Sbjct: 274 TNDPVDIPLNENIRKWLPEQGNASMEDLVFSGLITLGRS--NEILPKWAEKAGINKHLTF 331

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR-IRLGIKNSRRIS 340
           H  R   A ++       + +    G +++   E YT+  D   +  ++   +I+
Sbjct: 332 HCSRHTFAVLAIAKKVDIYTVSKLLGHQSITVTEIYTEVLDNSKKEAMEAIGKIN 386


>gi|209521419|ref|ZP_03270129.1| tyrosine recombinase XerC [Burkholderia sp. H160]
 gi|209498137|gb|EDZ98282.1| tyrosine recombinase XerC [Burkholderia sp. H160]
          Length = 307

 Score =  109 bits (273), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 46/288 (15%), Positives = 91/288 (31%), Gaps = 31/288 (10%)

Query: 75  ISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTP 130
           I+ Y     H   L+ ++   +    +++ + +       +T   IR  V        T 
Sbjct: 7   IAAYLSHLEHERRLSAHTLRGYTHELEELKQLAKGRPLESLTAVDIRGAVARAHAGGLTA 66

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KSFW 186
            S    L++ R  ++W   +  +  NP  +V  PK+     +  + +D  +      +  
Sbjct: 67  RSIGHRLSAWRAFYRWLAGRVELPANPVAAVRAPKQAKTLPKALSVDDAARLMDNPAADS 126

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQ------HLQNNIFSIKT------QKTGTIIT 234
            EG +     E    SGLR ++     V+      H       +         K      
Sbjct: 127 PEGLRDHAMLELFYSSGLRLAELVGLDVRFADIDGHRSAGWLKLDAAEVEVLGKGNRRRV 186

Query: 235 VELPDGFMKLLAMTPIGKE--------TFFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284
           V +    +  L      ++          F++    +++        K  A  AG+    
Sbjct: 187 VPVGSKAVAALNAWLGVRDQMVRHDPHPLFLSTRGNRLSPNVVRERVKRAALAAGIPANV 246

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
             H +R   AT    +      +    G  ++   + YT G D   L 
Sbjct: 247 HPHVLRHSFATHVLQSSGDLRAVQELLGHASITATQVYT-GLDFQHLA 293


>gi|33152918|ref|NP_874271.1| site-specific tyrosine recombinase XerC [Haemophilus ducreyi
           35000HP]
 gi|71153410|sp|Q7VKG8|XERC_HAEDU RecName: Full=Tyrosine recombinase xerC
 gi|33149143|gb|AAP96660.1| integrase/recombinase XerC [Haemophilus ducreyi 35000HP]
          Length = 304

 Score =  109 bits (273), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 38/259 (14%), Positives = 84/259 (32%), Gaps = 19/259 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDF---DYRKITTKHIRSGV---ESRKHTPSSAIQFLT 138
             ++ ++  +++     I          D++ +    +R  +     +     S    L 
Sbjct: 23  KQVSPHTLTNYQRQLLAISEMLIAAQIDDWQAVDASVVRWILTQSHKQGLGAKSIGLRLV 82

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLA 195
            +R  F + V++ YV +NP + ++ PK      +    E M Q            +    
Sbjct: 83  VLRQWFAYLVQRHYVKVNPAVGIKAPKVARHLPKNIDAERMGQLLDVEVDEPADIRDLAM 142

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVEL----PDGFMKLLAMTP- 249
            E +  SGLR ++  R  +  +      ++   K      V +           L + P 
Sbjct: 143 MELMYSSGLRLAELQRLDLGDMDLIDAEVRLLGKGNKERIVPIGSRALTALQAWLTVRPS 202

Query: 250 --IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAH 305
                   F+N    +++     +  +    + G+      H +R   AT   +A     
Sbjct: 203 FNPQDNALFLNKRGGRLSHRSIQLAMQKWGERQGLATRLHPHKLRHSFATHLLEASTDLR 262

Query: 306 ELMATYGWKTVDQAETYTK 324
            +    G  ++   + YT 
Sbjct: 263 AVQELLGHSSLSTTQIYTH 281


>gi|15677703|ref|NP_274864.1| integrase/recombinase XerC [Neisseria meningitidis MC58]
 gi|34223071|sp|Q9JXV6|XERC_NEIMB RecName: Full=Tyrosine recombinase xerC
 gi|7227126|gb|AAF42202.1| integrase/recombinase XerC [Neisseria meningitidis MC58]
 gi|325139527|gb|EGC62067.1| tyrosine recombinase XerC [Neisseria meningitidis CU385]
 gi|325200925|gb|ADY96380.1| tyrosine recombinase XerC [Neisseria meningitidis H44/76]
          Length = 301

 Score =  109 bits (273), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 38/274 (13%), Positives = 84/274 (30%), Gaps = 20/274 (7%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI---TTKHIRSGVES-- 125
           L   +  Y ++      + ++  ++     +++    +         T       +    
Sbjct: 6   LAAYLDAYLENIVREGKSEHTVAAYRRDLQELLALLEEMPSANPSNCTRGDFVQALRRLS 65

Query: 126 -RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
            R     +  + L+S R    W V++  +  +P   ++ PK+     +   +E + +   
Sbjct: 66  GRGLGERTLARKLSSWRQYCVWLVKRGLMHADPTADIKPPKQPERVPKALPQEWLNRMLD 125

Query: 185 F-----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELP 238
                      +    FE +  SGLR S+        +  +   +     G     V L 
Sbjct: 126 LPVDGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVIGKGRKQRQVPLV 185

Query: 239 ----DGFMKLL--AMTPIGKETFFINNDKQKMNATQFSIWFKAKATK--AGVNKSAHGVR 290
               +     L    T    +  F   +  +++  Q        A +   G + S H +R
Sbjct: 186 GKSVEALKNYLPLRQTASDGKALFTGRNGTRLSQRQIQKRLAQWAAQNGDGRHVSPHMMR 245

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              A     A      +    G  ++   + YTK
Sbjct: 246 HSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTK 279


>gi|15600473|ref|NP_253967.1| site-specific tyrosine recombinase XerC [Pseudomonas aeruginosa
           PAO1]
 gi|254238023|ref|ZP_04931346.1| site-specific recombinase Sss [Pseudomonas aeruginosa C3719]
 gi|34222782|sp|Q51566|XERC_PSEAE RecName: Full=Tyrosine recombinase xerC
 gi|9951593|gb|AAG08665.1|AE004940_9 site-specific recombinase Sss [Pseudomonas aeruginosa PAO1]
 gi|126169954|gb|EAZ55465.1| site-specific recombinase Sss [Pseudomonas aeruginosa C3719]
          Length = 303

 Score =  109 bits (273), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 39/288 (13%), Positives = 97/288 (33%), Gaps = 24/288 (8%)

Query: 85  GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIR---SGVESRKHTPSSAIQFLT 138
             ++ ++   +     +I+    K+G  D+  + T+ +R   + +  +  +  S  + L+
Sbjct: 16  RQVSAHTLDGYRRDLLKILALAEKAGLSDWNALDTRSLRTFVARLHQQGQSSRSLARLLS 75

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRL 194
           + R L+++ +R+     +P   +  PK   +  R    +   Q      E      + + 
Sbjct: 76  ATRGLYQYLLREGRCRHDPANGLSAPKSPRKLPRTLDADRALQLLDGAVEDDFIARRDQA 135

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-VELPDGFMKLLAM------ 247
             E    SGLR S+     ++ L      ++ +  G  +  + +     + L        
Sbjct: 136 LLELFYSSGLRLSELVGLDLEWLDLKEGLVRVRGKGNKVRELPVGKAARQALEAWLPLRT 195

Query: 248 -TPIGKETFFINNDKQKMNATQFSIWFKAK-ATKAGVNKSAHGVRKFSATISADAGATAH 305
                    FI    +++      +  +     + G +   H +R   A+   ++     
Sbjct: 196 QAAPEDGAVFIGRSGKRLTPRAIQLRVRQAGVRELGQHLHPHMLRHSFASHLLESSGDLR 255

Query: 306 ELMATYGWKTVDQAETYT-----KGADRIRLGIKNSRRISSVVDSDDP 348
            +    G   +   + YT       A         ++R  +    +DP
Sbjct: 256 AVQELLGHADIATTQIYTHLDFQHLASVYDRAHPRAKRKGNADGGNDP 303


>gi|315125203|ref|YP_004067206.1| site-specific recombinase [Pseudoalteromonas sp. SM9913]
 gi|315013716|gb|ADT67054.1| site-specific recombinase [Pseudoalteromonas sp. SM9913]
          Length = 314

 Score =  109 bits (273), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 49/297 (16%), Positives = 108/297 (36%), Gaps = 28/297 (9%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWLISEYRK-----SAHWGSLAVNSRISFESYFDQIIRK 105
           ++  TP    ++   + P T   L S+Y K     SAH  +  V+       YF+++   
Sbjct: 1   MSDDTPNISDLSDSWRTPIT---LFSDYLKFERQYSAHTVNQYVSQLGFAALYFNKLCDN 57

Query: 106 SGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA----INPCLSV 161
              F  +    +     + +++ +  +    L+ +R L+K+   +         NP   +
Sbjct: 58  W--FAVQSEHIRRYSMALRAKQLSGRTISLKLSCIRSLYKFLKAKNITEQPHYHNPAQGI 115

Query: 162 ERPKRKTEGIRPWTKEDMQQFKSF---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218
           + PK      +    + M +            + +   E +  SGLR S+   A +Q + 
Sbjct: 116 KGPKFAKPLPKNLDVDQMARLLEIPDDDPLAIRDKAMMELMYSSGLRISELVGANMQDIN 175

Query: 219 NNIFSIKTQKTG-TIITVEL----PDGFMKLLAMTP----IGKETFFINNDKQKMNATQF 269
                I  +  G     + +     +   K LA+ P      +   F+++ K +++  Q 
Sbjct: 176 ARNGEILVRGKGAKERLIPVGSKALEALKKWLAVRPLFMGADEHAVFLSSKKNRISVRQV 235

Query: 270 SIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            +  +    K G++     H +R   A+   ++      +    G  ++   + YT 
Sbjct: 236 RLRMQEWGIKQGISSQVHPHKLRHSFASHILESSGDLRAVQELLGHSSLSATQVYTH 292


>gi|42523751|ref|NP_969131.1| integrase/recombinase XerD [Bdellovibrio bacteriovorus HD100]
 gi|39575958|emb|CAE80124.1| integrase/recombinase XerD [Bdellovibrio bacteriovorus HD100]
          Length = 292

 Score =  109 bits (273), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 42/258 (16%), Positives = 85/258 (32%), Gaps = 26/258 (10%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLF 144
              + N+ +++    +  +     +     T       ++  K +  S  + ++S+R  F
Sbjct: 17  RGRSQNTVMAYRRDLELYLE----YRKTGKTVPGFYEFMKKNKLSTRSQARVISSLRTYF 72

Query: 145 KWAVRQEYVAINP-CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG-----SQPRLAFEF 198
           K+   +      P    +  PK K    +  T ++ QQ             ++ +L   F
Sbjct: 73  KFCETRGMKC--PELRELRPPKVKVGLPKVLTPQEFQQLFDAAEVPDAVKTARNQLTLLF 130

Query: 199 LLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLL---------AM 247
           L   G R S+     V      +    +   K      V L +   + L         A+
Sbjct: 131 LYGLGCRVSELIGLNVVDFNQTDRWIKV-LGKGNKERLVPLTEKLAENLTVYLKEHRMAL 189

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAH 305
                 +  IN+   + +      W  A + +AG     + H  R   AT   ++GA   
Sbjct: 190 VKENSPSILINDRGHRPSRVDVWRWLAAWSARAGFAEPVNPHRFRHGCATALLESGADLR 249

Query: 306 ELMATYGWKTVDQAETYT 323
            +    G  ++   + YT
Sbjct: 250 SIQMLLGHASIQTTQIYT 267


>gi|88705495|ref|ZP_01103205.1| site-specific recombinase [Congregibacter litoralis KT71]
 gi|88700008|gb|EAQ97117.1| site-specific recombinase [Congregibacter litoralis KT71]
          Length = 312

 Score =  109 bits (273), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 38/269 (14%), Positives = 93/269 (34%), Gaps = 23/269 (8%)

Query: 77  EYRKSAHWGSLAVNSRISFESYF---DQIIRKSGDFDYRKITTKHIRSGV---ESRKHTP 130
           EY +S     L+ ++  +++                D  ++   H+R  +     R   P
Sbjct: 20  EYLRSVR--RLSPHTVAAYQRDLGSFRAFCDAQSLQDCDEVQESHVRQWLAQGHRRSLAP 77

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK---SFWS 187
           +S  + L+++R  F+W         NP L+V+ P+++ +       + +  +    +   
Sbjct: 78  NSLQRQLSALRAYFEWESSDTGRRRNPALAVQAPRKRRKLPGTLEADQVGVYLRADAEDP 137

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII-TVELPDGFMKLLA 246
              +     E    SGLR  +     +  +      I     G+   TV +    +  + 
Sbjct: 138 LQLRDLAMAELFYSSGLRLGELRAVNLYDIDRGQSLISVTGKGSKTRTVPVGSAAIAAID 197

Query: 247 M---------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSAT 295
                     +   +E  F+++  ++++        +  A + G+ +    H +R   A+
Sbjct: 198 AYLPHRPAAVSDDDQEALFLSSRGRRISERSIQSRVQLLAERNGLGRDVHPHMLRHSFAS 257

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTK 324
              ++      +    G   +   + YT 
Sbjct: 258 HLLESSGDLRAVQELLGHSDISTTQIYTH 286


>gi|256965045|ref|ZP_05569216.1| phage integrase [Enterococcus faecalis HIP11704]
 gi|307273143|ref|ZP_07554389.1| tyrosine recombinase XerC [Enterococcus faecalis TX0855]
 gi|256955541|gb|EEU72173.1| phage integrase [Enterococcus faecalis HIP11704]
 gi|306510128|gb|EFM79152.1| tyrosine recombinase XerC [Enterococcus faecalis TX0855]
          Length = 299

 Score =  109 bits (273), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 39/267 (14%), Positives = 96/267 (35%), Gaps = 29/267 (10%)

Query: 85  GSLAVNSRISFE---SYFDQIIRKSGDFDY---RKITTKHIRSGVESRKHTPSSAIQFLT 138
              +  ++ +++    +F   ++ SG+ +Y     +  +   S +  ++++ +S  + + 
Sbjct: 18  RGYSEKTKKAYQEDIQHFFSFLKTSGNDNYLTVEHLDVRAYLSELYDQEYSRNSISRKIA 77

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRL 194
           S+R  +++ ++ E +  NP   V   K++    R + +++M               + + 
Sbjct: 78  SLRSFYQFLLKNEAIQENPFSYVHMKKKELRLPRFFYEKEMDALFESAQGEQPLDLRNQA 137

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-ITVE------------LPDGF 241
             E L  +G+R S+     V  +      +     G     V             L +G 
Sbjct: 138 LLEVLYGTGIRVSECANLTVDAVDFQASVLLVHGKGNKDRYVPFGSFAQDALKDYLENGR 197

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQ----FSIWFKAKATKAGVNKSAHGVRKFSATIS 297
             L+          F+N+  +++  T      +   K  +  A ++   H +R   AT  
Sbjct: 198 ALLMTKYQKKHPYVFVNHHGEQITPTGIEYVLNQLIKKSSLNAEIH--PHMLRHTFATHL 255

Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324
            + GA    +    G   +   + Y  
Sbjct: 256 LNNGADMRTVQELLGHANLSTTQIYAH 282


>gi|294783592|ref|ZP_06748916.1| phage integrase family site-specific recombinase [Fusobacterium sp.
           1_1_41FAA]
 gi|294480470|gb|EFG28247.1| phage integrase family site-specific recombinase [Fusobacterium sp.
           1_1_41FAA]
          Length = 371

 Score =  109 bits (273), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 48/295 (16%), Positives = 103/295 (34%), Gaps = 33/295 (11%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFE--SYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127
           T   L  ++  +     ++ N+   +E       +     +    +IT   ++      +
Sbjct: 72  TFGDLFKQWIFNHKKVEVSDNTFGEYETAYRLRILPYNISNKRVNQITLNDLQMYFNELQ 131

Query: 128 HTPSSAIQFLTS---MRVLFKWAVRQEYVAINPCLSVERPK-RKTEGIRPWTKEDMQQFK 183
              S+      +   +   FK+A+ Q  +  NPCL V   K +K E    ++K++ +   
Sbjct: 132 EKFST-NTIKKAYIQIHSCFKFAIIQGILNKNPCLGVTLQKEKKKEKYNVFSKQEQELIL 190

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ---------------- 227
           +  ++         F  ++GLR  +        ++  I S++ Q                
Sbjct: 191 NTLNKKDIVDCLIYFTFFTGLRLGEVLALKWTDVKGKILSVERQYNRTVTIKDIGVSKLT 250

Query: 228 ------KTG-TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280
                 KT  +   + LPD  + +L   P   E  F +++ + +   +      A   K 
Sbjct: 251 YEFKDLKTKNSKREIPLPDKALVILEGIPKTYELIF-SDEGKPIERKRPQRRITALCKKL 309

Query: 281 GV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGI 333
            + ++S H +R   AT   +       + +  G   +D     YT      ++ I
Sbjct: 310 NLEHRSFHSIRHSYATRLFELDVPIKTVQSLMGHSDMDTTMNIYTHVMQDKKMEI 364


>gi|294646923|ref|ZP_06724544.1| integron integrase [Bacteroides ovatus SD CC 2a]
 gi|294810786|ref|ZP_06769432.1| integron integrase [Bacteroides xylanisolvens SD CC 1b]
 gi|292637868|gb|EFF56265.1| integron integrase [Bacteroides ovatus SD CC 2a]
 gi|294441974|gb|EFG10795.1| integron integrase [Bacteroides xylanisolvens SD CC 1b]
          Length = 368

 Score =  109 bits (273), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 39/297 (13%), Positives = 94/297 (31%), Gaps = 22/297 (7%)

Query: 41  STFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD 100
             F   Y         +    +   K+  TL      Y +       + ++  ++ +YF 
Sbjct: 62  PDFYDRYSPHAYIDYSRVYVRHPKPKREYTLP---KGYLELLEQKRYSPSTVKTYRAYFS 118

Query: 101 QIIRKSGDFDYRKITTKHIRSGV----ESRKHTPSSAIQFLTSMRVLFKWAV--RQEYVA 154
             +      +  ++    I   +      +K + S     + +++  ++     +++Y  
Sbjct: 119 DFMEYHEGRNIDRLKVPDINKYILYLVNEKKISVSQQNMRINAIKFYYEQVKGGKRQYYG 178

Query: 155 INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGV 214
                 + R K         +K ++++  +  S   +       +  +GLR S+      
Sbjct: 179 -----GITRAKEYKSLPEVLSKNEIKRILAQIS-NIKHHCMISLVYSAGLRRSELLNLTP 232

Query: 215 QHLQNNIFSIKTQKTGTI-----ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF 269
           Q + +   S++    G       ++ +L +            K  F      ++ +A+  
Sbjct: 233 QDINSETMSVRIMGKGKKCRYSLLSPKLLEELRHYFREYRPQKWLFEGETPGEQYSASAL 292

Query: 270 SIWFKAKATKAGVNKSAHG--VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
               K  A +AG+    H   +R   AT   + G   H +    G   +     Y  
Sbjct: 293 VKVLKEAAHRAGIKHRVHVHMLRHSFATHLLEQGTDLHTIQELLGHNDIKTTTIYLH 349


>gi|256959059|ref|ZP_05563230.1| integrase [Enterococcus faecalis DS5]
 gi|257079090|ref|ZP_05573451.1| phage integrase [Enterococcus faecalis JH1]
 gi|294781639|ref|ZP_06746975.1| tyrosine recombinase XerC [Enterococcus faecalis PC1.1]
 gi|307270938|ref|ZP_07552221.1| tyrosine recombinase XerC [Enterococcus faecalis TX4248]
 gi|256949555|gb|EEU66187.1| integrase [Enterococcus faecalis DS5]
 gi|256987120|gb|EEU74422.1| phage integrase [Enterococcus faecalis JH1]
 gi|294451335|gb|EFG19801.1| tyrosine recombinase XerC [Enterococcus faecalis PC1.1]
 gi|306512436|gb|EFM81085.1| tyrosine recombinase XerC [Enterococcus faecalis TX4248]
 gi|315037059|gb|EFT48991.1| tyrosine recombinase XerC [Enterococcus faecalis TX0027]
          Length = 299

 Score =  109 bits (273), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 38/267 (14%), Positives = 95/267 (35%), Gaps = 29/267 (10%)

Query: 85  GSLAVNSRISFE---SYFDQIIRKSGDFDY---RKITTKHIRSGVESRKHTPSSAIQFLT 138
              +  ++ +++    +F   ++ SG+ +Y     +  +   S +  ++++ +S  + + 
Sbjct: 18  RGYSEKTKKAYQEDIQHFFSFLKTSGNDNYLTVEHLDVRAYLSELYDQEYSRNSISRKIA 77

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRL 194
           S+R  +++ ++ E +  NP   V   K++    R + +++M               + + 
Sbjct: 78  SLRSFYQFLLKNEAIQENPFSYVHMKKKQLRLPRFFYEKEMDALFESAQGEQPLDLRNQA 137

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-ITVE------------LPDGF 241
             E L  +G+R S+     V  +      +     G     V             L +  
Sbjct: 138 LLEVLYGTGIRVSECANLTVDAVDFQASVLLVHGKGNKDRYVPFGSFAQDALKDYLENSR 197

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQ----FSIWFKAKATKAGVNKSAHGVRKFSATIS 297
             L+          F+N+  +++  T      +   K  +  A ++   H +R   AT  
Sbjct: 198 ALLMTKYQKKHPYVFVNHHGEQITPTGIEYVLNQLIKKSSLNAEIH--PHMLRHTFATHL 255

Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324
            + GA    +    G   +   + Y  
Sbjct: 256 LNNGADMRTVQELLGHANLSTTQIYAH 282


>gi|282916512|ref|ZP_06324270.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           D139]
 gi|283770316|ref|ZP_06343208.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus H19]
 gi|282318999|gb|EFB49351.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           D139]
 gi|283460463|gb|EFC07553.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus H19]
          Length = 298

 Score =  109 bits (273), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 37/266 (13%), Positives = 93/266 (34%), Gaps = 22/266 (8%)

Query: 85  GSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVE---SRKHTPSSAIQFLTS 139
            + + ++  S++    Q  +  +           +  R+ +    S     +S  + +++
Sbjct: 16  RNFSEHTLKSYKDDLIQFNQFLEQEHLQLNTFEYRDARNYLSYLYSNHLKRTSVSRKIST 75

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLA 195
           +R  +++ +  +   INP + +  PK++    + + +E+M+       E +    + R+ 
Sbjct: 76  LRTFYEYWMTLDENIINPFVQLVHPKKEKYLPQFFYEEEMEALFKTVEEDTSKSLRDRVI 135

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVE--------LPDGFMKLL 245
            E L  +G+R S+      Q +    N  ++   K      V         + +      
Sbjct: 136 LELLYATGIRVSELVNIKKQDIDFYANGVTV-LGKGSKERFVPFGAYCRQSIENYLEHFK 194

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATK-AGV-NKSAHGVRKFSATISADAGAT 303
            +     +   +N   + +              + AGV     H +R   AT   + GA 
Sbjct: 195 PIQSCNHDFLIVNMKGEAITERGVRYVLNDIVKRTAGVSEIHPHKLRHTFATHLLNQGAD 254

Query: 304 AHELMATYGWKTVDQAETYTKGADRI 329
              + +  G   +     YT  +++ 
Sbjct: 255 LRTVQSLLGHVNLSTTGKYTHVSNQQ 280


>gi|323358629|ref|YP_004225025.1| site-specific recombinase XerD [Microbacterium testaceum StLB037]
 gi|323275000|dbj|BAJ75145.1| site-specific recombinase XerD [Microbacterium testaceum StLB037]
          Length = 309

 Score =  109 bits (273), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 42/290 (14%), Positives = 85/290 (29%), Gaps = 37/290 (12%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFES----YFDQII----RKSGDFDYRKITTKHIRS 121
           L+  +  Y +       L+ ++  ++      Y + +               I       
Sbjct: 3   LERAVEGYLRHVALERGLSDHTVAAYRRDLAVYIEWLRGRGVDAIETVTPALIADFAAER 62

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
                    SS  +  +S+R L ++ V +  V  +P   +  PK      +  T   + +
Sbjct: 63  ASAEPPPASSSLARLQSSVRGLHRFLVLEGRVDDDPSGRLRPPKAPRRLPKALTIGQVNE 122

Query: 182 FKSFW-------------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQH-LQNNIFSIKTQ 227
                                 + R   E L  +G R S+  +  V   +  ++  ++  
Sbjct: 123 LLDAAGPAPGSSDASVAEPAAVRDRALLELLYATGARVSEIVQLDVDDTVHGDLLRVR-G 181

Query: 228 KTGTIITVEL-----------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK 276
           K      V +                  LA         F+      ++     +  +A 
Sbjct: 182 KGDKERVVPVGSYARAAIEAYLTRVRPALAAKGRATPRLFLGVRGAPLSRQSAWLIIQAA 241

Query: 277 ATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           A +A +  + S H +R   AT     GA    +    G  +V   + YT 
Sbjct: 242 AERASLTAHVSPHTLRHSFATHLLQGGADVRVVQELLGHASVATTQIYTH 291


>gi|90422054|ref|YP_530424.1| tyrosine recombinase XerD [Rhodopseudomonas palustris BisB18]
 gi|90104068|gb|ABD86105.1| tyrosine recombinase XerD subunit [Rhodopseudomonas palustris
           BisB18]
          Length = 320

 Score =  109 bits (273), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 46/295 (15%), Positives = 92/295 (31%), Gaps = 39/295 (13%)

Query: 74  LISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVESRK 127
           LI  +    A       N+  ++      +    G      +       +   + ++ R 
Sbjct: 11  LIELFLDMIAAEQGAGKNTLDAYRGDLTDLSDFLGHARSSFVAADTEVLRGYLAELDERG 70

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           +  +S  + L++ R LF++ + +   A +P   +  PKR     +  +  D+ +      
Sbjct: 71  YKSTSVARKLSAFRHLFRFLLTERIRADDPAAILSGPKRGRGLPKVLSIADVDRLLQHAK 130

Query: 188 -------EGSQPRLA-------FEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTI 232
                    +Q RL         E L  +GLR S+     +   + +    +   K    
Sbjct: 131 DLIAAPHANTQQRLRAARLYCLLEVLYATGLRVSELVSLPLSAARRDARMIVVRGKGNKE 190

Query: 233 ITVEL--------------PDGFMKLLAMTPIGKETFFIN-NDKQKMNATQFSIWFKAKA 277
             V L               D   +  A      +  F +  +   +    F+   K  A
Sbjct: 191 RLVPLNESSKQAMAGYLAALDELRQEKAKNASASKWLFPSFGESGHLTRQHFARELKDLA 250

Query: 278 TKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             AG++    S H +R   A+     GA    +    G   +   + YT   +  
Sbjct: 251 GAAGLSPRLVSPHVLRHAFASHLLHNGADLRIVQTLLGHTDISTTQIYTHVVEER 305


>gi|167561111|ref|ZP_02354027.1| site-specific tyrosine recombinase XerC [Burkholderia oklahomensis
           EO147]
          Length = 306

 Score =  109 bits (273), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 43/280 (15%), Positives = 91/280 (32%), Gaps = 32/280 (11%)

Query: 75  ISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTP 130
           I++Y  +  H   L+ ++  ++    D++ + +       +T   +R  V        + 
Sbjct: 6   IADYLSNLRHVRKLSDHTLRAYAHELDELKKLANGRPLESLTAVDVRGAVARAHAGGLSA 65

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
            S    L++ R  ++W  +   +  NP  ++  PKR     +  + +D        + G+
Sbjct: 66  RSISHRLSAWRAFYRWFAQHVEMNANPVATIRAPKRAKMLPKALSVDDAAALMDAPASGT 125

Query: 191 ----QPRLAFEFLLYSGLRCSDSCRA-------------GVQHLQNNIFSIKTQKTGTII 233
               +     E    SGLR ++                 G   L     +++  K     
Sbjct: 126 AESLRDHAILELFYSSGLRLAELIGLDVAYVKIGEYRSEGWLDLAEAEVTVR-GKGDKER 184

Query: 234 TVELPDGFMKLLAMTPIGKETF--------FINNDKQKMNATQFSIWFKAKATKAGVNK- 284
            V +    +  L      +  F        F++    +M+        K  A  AG+   
Sbjct: 185 KVPVGRKAIDALNAWLAVRGEFVRHDPHPLFLSVRGNRMSPGVVRGRVKRAALAAGIPAN 244

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
              H +R   AT    +      +    G  ++   + YT
Sbjct: 245 VHPHVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYT 284


>gi|147677583|ref|YP_001211798.1| site-specific recombinase XerD [Pelotomaculum thermopropionicum SI]
 gi|189030080|sp|A5D2W6|XERC_PELTS RecName: Full=Tyrosine recombinase xerC
 gi|146273680|dbj|BAF59429.1| site-specific recombinase XerD [Pelotomaculum thermopropionicum SI]
          Length = 306

 Score =  109 bits (273), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 45/272 (16%), Positives = 95/272 (34%), Gaps = 32/272 (11%)

Query: 85  GSLAVNSRISFESYF----DQIIRKSGDFDYRKITT-------KHIRSGVESRKHTPSSA 133
            + +  +  S++       D    + G  D+  + +       +H  + ++ +    ++ 
Sbjct: 16  KNASPRTTESYQKDLFHGLDYFASRLGKEDHAIVPSDIDHRIFRHYLAHMQKQGLARATM 75

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFWSEG 189
            + L + R  +++  R++ +  NP L V  PK +    R   +++    ++   +    G
Sbjct: 76  ARRLAAWRSFYRYLYREKIIDGNPLLRVASPKLEKRLPRFLYEDEAKELVEAPDTKQPLG 135

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAM- 247
            + R   E L   GLR S+     +  L  +   I+ T K      V L    ++ L   
Sbjct: 136 MRDRALLETLYAGGLRISELVLLDLGDLDISSGYIRVTGKRARERLVPLGSMAVEALQAY 195

Query: 248 -------------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292
                                F+N   ++++A            K  + +  S H +R  
Sbjct: 196 LAKARPRLMANSVAKKINNALFLNCRGERLSARGIRKILDKYVEKVSLERKISPHTLRHS 255

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324
            AT   +AGA    +    G   +   + YT 
Sbjct: 256 FATHLLNAGADLRSVQELMGHVRLSSTQVYTH 287


>gi|77461722|ref|YP_351229.1| site-specific tyrosine recombinase XerC [Pseudomonas fluorescens
           Pf0-1]
 gi|123602828|sp|Q3K4R6|XERC_PSEPF RecName: Full=Tyrosine recombinase xerC
 gi|77385725|gb|ABA77238.1| tyrosine recombinase [Pseudomonas fluorescens Pf0-1]
          Length = 299

 Score =  109 bits (273), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 39/273 (14%), Positives = 94/273 (34%), Gaps = 22/273 (8%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQ-----IIRKSGDFDYRKITT-KHIRSGVE 124
           L       R       ++ ++  ++    D+     I +  G +    I   + + + + 
Sbjct: 5   LDAYCEHLRSE---RQVSPHTLSAYRRDLDKVLGWCIKQNIGSWQALDIQRLRSLIARLH 61

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW-TKEDMQQFK 183
           ++  +  S  + L+++R L+ +  R+     +P   +  PK +    +   T   +Q  +
Sbjct: 62  AQGQSSRSLARLLSAVRGLYHYLNRECLCDHDPATGLAPPKGERRLPKTLDTDRALQLLE 121

Query: 184 SFWSEGSQPR---LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV----- 235
               +    R      E    SGLR S+     +  L      ++    G+   +     
Sbjct: 122 GAVEDDFLARRDQAILELFYSSGLRLSELTGLNLDQLDLADGMVQVLGKGSKTRLLPVGK 181

Query: 236 ---ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK-ATKAGVNKSAHGVRK 291
              E  + ++ L A+T    +  F++   +++      +  K     + G N   H +R 
Sbjct: 182 KAREALEQWLPLRALTNPSDDAVFVSQQGRRLGPRAIQVRVKLAGERELGQNLHPHMLRH 241

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK 324
             A+   ++      +    G   +   + YT 
Sbjct: 242 SFASHLLESSQDLRAVQELLGHSDIKTTQIYTH 274


>gi|15900773|ref|NP_345377.1| phage integrase family integrase/recombinase [Streptococcus
           pneumoniae TIGR4]
 gi|111656825|ref|ZP_01407676.1| hypothetical protein SpneT_02001908 [Streptococcus pneumoniae
           TIGR4]
 gi|148988317|ref|ZP_01819764.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP6-BS73]
 gi|148993703|ref|ZP_01823150.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP9-BS68]
 gi|149002427|ref|ZP_01827361.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP14-BS69]
 gi|168490325|ref|ZP_02714524.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae SP195]
 gi|182683810|ref|YP_001835557.1| phage integrase family integrase/recombinase [Streptococcus
           pneumoniae CGSP14]
 gi|225858687|ref|YP_002740197.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae 70585]
 gi|225861217|ref|YP_002742726.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae Taiwan19F-14]
 gi|237650544|ref|ZP_04524796.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae CCRI 1974]
 gi|237822639|ref|ZP_04598484.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae CCRI 1974M2]
 gi|298229452|ref|ZP_06963133.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae str. Canada MDR_19F]
 gi|298254243|ref|ZP_06977829.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae str. Canada MDR_19A]
 gi|298503103|ref|YP_003725043.1| phage integrase/recombinase [Streptococcus pneumoniae TCH8431/19A]
 gi|303262774|ref|ZP_07348712.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP14-BS292]
 gi|303267703|ref|ZP_07353526.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae BS457]
 gi|303270062|ref|ZP_07355780.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae BS458]
 gi|307127558|ref|YP_003879589.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae 670-6B]
 gi|14972364|gb|AAK75017.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae TIGR4]
 gi|147759364|gb|EDK66356.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP14-BS69]
 gi|147925998|gb|EDK77072.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP6-BS73]
 gi|147927783|gb|EDK78806.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP9-BS68]
 gi|182629144|gb|ACB90092.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae CGSP14]
 gi|183571337|gb|EDT91865.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae SP195]
 gi|225720290|gb|ACO16144.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae 70585]
 gi|225727056|gb|ACO22907.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae Taiwan19F-14]
 gi|298238698|gb|ADI69829.1| phage integrase/recombinase [Streptococcus pneumoniae TCH8431/19A]
 gi|301794021|emb|CBW36419.1| putative integrase/recombinase [Streptococcus pneumoniae INV104]
 gi|301801716|emb|CBW34422.1| putative integrase/recombinase [Streptococcus pneumoniae INV200]
 gi|302636096|gb|EFL66593.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP14-BS292]
 gi|302640408|gb|EFL70837.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae BS458]
 gi|302642766|gb|EFL73090.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae BS457]
 gi|306484620|gb|ADM91489.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae 670-6B]
 gi|332073220|gb|EGI83699.1| phage integrase, N-terminal SAM-like domain protein [Streptococcus
           pneumoniae GA17570]
 gi|332076174|gb|EGI86640.1| phage integrase, N-terminal SAM-like domain protein [Streptococcus
           pneumoniae GA41301]
 gi|332076339|gb|EGI86804.1| phage integrase, N-terminal SAM-like domain protein [Streptococcus
           pneumoniae GA17545]
          Length = 321

 Score =  109 bits (273), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 36/275 (13%), Positives = 91/275 (33%), Gaps = 14/275 (5%)

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
           ++  +++  +   L+  +  +      +  +   ++   + +          ++TT  +R
Sbjct: 33  VDGKKQQKYSNNNLLQLFITAKQVEGCSSKTIRYYQRTIENLFNAI-KESVTQLTTDDLR 91

Query: 121 SGVESRKH----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
           S + + +     + ++       +   F W  ++EY+  NP   +++ K +      +T 
Sbjct: 92  SYLANYQSEKDCSKANLDNIRRILSSFFAWLEQEEYIIKNPIRRIKKIKTEQNVKETYTD 151

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITV 235
           E ++  +    E  +     + L  +G+R  +  +     +   N   +   K      V
Sbjct: 152 EHLEIMRDNC-ENLRDLAIIDLLASTGMRVGELVQLNRSDIDFENRECVVFGKGKKERPV 210

Query: 236 ELPDG----FMKLLAMTPIGKETFFINNDKQ--KMNATQFSIWFKAKATKAGVNK-SAHG 288
                        L          F+    +  ++      I  +    K G+ K   H 
Sbjct: 211 YFDARTKIHLRNYLNDRKDSHPALFVTLVGKVQRLGIAGVEIRLRKLGDKLGIQKVHPHK 270

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
            R+  AT + D G    ++    G   +D    Y 
Sbjct: 271 FRRTLATKAIDKGMPIEQVQKLLGHSKIDTTLAYA 305


>gi|53728778|ref|ZP_00135130.2| COG0582: Integrase [Actinobacillus pleuropneumoniae serovar 1 str.
           4074]
 gi|307252047|ref|ZP_07533947.1| Predicted phage integrase family protein [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306860516|gb|EFM92529.1| Predicted phage integrase family protein [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
          Length = 311

 Score =  109 bits (273), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 51/252 (20%), Positives = 92/252 (36%), Gaps = 18/252 (7%)

Query: 88  AVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFK 145
           A N+R S       + +  GD      +I  +HI+  ++ RK TP+ A   +     ++ 
Sbjct: 53  AKNTRQSNLQAIGWLCKFFGDPPIPLERIEPQHIKQYLQWRKDTPAVANIEVGLFNTIWN 112

Query: 146 WAVRQEYVA-INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGL 204
            A    Y +  +P   V++   K   I       +++   F  E        E     G 
Sbjct: 113 SAREWGYTSLPSPSQGVKKFPTKYREIYV-EDYILEKIYEFADERMAD--IIETAYLLGQ 169

Query: 205 RCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF-FINNDKQK 263
           R  D C     H+ N I  I  QKTG  +  E+     +++      + T+ F N   +K
Sbjct: 170 RPIDICNIHRSHIYNGILHITQQKTGKKVRFEITGRLKEIIDKRLQPETTWLFTNKWGKK 229

Query: 264 MNATQFSIWFKAKATKA---------GVNK-SAHGVRKFSATISADAGATAHELMATYGW 313
           ++    ++ F+    KA          + K     +R  +AT  +   AT  +     G 
Sbjct: 230 LDRQILTVHFREIREKAMRAYPELANEIGKVQMRDMRAKAATDISLT-ATDEQAQKQLGH 288

Query: 314 KTVDQAETYTKG 325
            +    + Y + 
Sbjct: 289 TSKRMTQHYIRK 300


>gi|329571616|gb|EGG53297.1| tyrosine recombinase XerC [Enterococcus faecalis TX1467]
          Length = 298

 Score =  109 bits (273), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 37/266 (13%), Positives = 93/266 (34%), Gaps = 28/266 (10%)

Query: 85  GSLAVNSRISFE---SYFDQIIRKSGD--FDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
              +  ++ +++    +F   ++ SG+       +  +   S +  ++++ +S  + + S
Sbjct: 18  RGYSEKTKKAYQEDIQHFFSFLKTSGNDYLTVEHLDVRAYLSELYDQEYSRNSISRKIAS 77

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLA 195
           +R  +++ ++ E +  NP   V   K++    R + +++M               + +  
Sbjct: 78  LRSFYQFLLKNEAIQENPFSYVHMKKKQLRLPRFFYEKEMDALFESAQGEQPLDLRNQAL 137

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-ITVE------------LPDGFM 242
            E L  +G+R S+     V  +      +     G     V             L +   
Sbjct: 138 LEVLYGTGIRVSECANLTVDAVDFQASVLLVHGKGNKDRYVPFGSFAQDALKDYLENSRA 197

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQ----FSIWFKAKATKAGVNKSAHGVRKFSATISA 298
            L+          F+N+  +++  T      +   K  +  A ++   H +R   AT   
Sbjct: 198 LLMTKYQKKHPYVFVNHHGEQITPTGIEYVLNQLIKKSSLNAEIH--PHMLRHTFATHLL 255

Query: 299 DAGATAHELMATYGWKTVDQAETYTK 324
           + GA    +    G   +   + Y  
Sbjct: 256 NNGADMRTVQELLGHANLSTTQIYAH 281


>gi|302879884|ref|YP_003848448.1| tyrosine recombinase XerC [Gallionella capsiferriformans ES-2]
 gi|302582673|gb|ADL56684.1| tyrosine recombinase XerC [Gallionella capsiferriformans ES-2]
          Length = 317

 Score =  109 bits (273), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 41/275 (14%), Positives = 88/275 (32%), Gaps = 26/275 (9%)

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-- 126
             L WL+ E          +  +  S+      +   S      ++   HIR  +     
Sbjct: 29  GYLAWLLGE-------RRYSKLTAESYARDLAHLFELSTGLALNELKVSHIRRYIAQLHS 81

Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
                 S  + L++ R  + + +R      NPC+ +  PK      +  + +   +    
Sbjct: 82  SGLGGRSLARLLSAWRGFYNYLLRDHGFTDNPCVGLRAPKSARALPQVLSPDQAVRMVDL 141

Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITV----- 235
                +  + +  FE    SGLR  +      + ++++I    ++    G    +     
Sbjct: 142 PTDAPDSIRDKAMFELFYSSGLRLMELIDLDAESIRSDITAGEVRVTGKGHKTRIVPLGG 201

Query: 236 ----ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289
                L +       +  IG+   F+     +++     +  K    K G+  S   H +
Sbjct: 202 CAISALHEWLAVRPTLANIGERALFVGARGARISPRVVQLRMKQWGIKQGITSSVHPHML 261

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           R   AT    +      +    G  ++   + YT 
Sbjct: 262 RHSFATHVLQSSGDLRAVQEMLGHASISTTQVYTH 296


>gi|261364802|ref|ZP_05977685.1| tyrosine recombinase XerC [Neisseria mucosa ATCC 25996]
 gi|288566830|gb|EFC88390.1| tyrosine recombinase XerC [Neisseria mucosa ATCC 25996]
          Length = 299

 Score =  109 bits (273), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 38/270 (14%), Positives = 93/270 (34%), Gaps = 21/270 (7%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSGVESRKH--- 128
           +  Y K       + ++  ++     +++R   +      + +T +   + ++       
Sbjct: 10  LDGYLKMLGQQGKSAHTLSAYGRDLTELVRLLTEGSSETAQDLTRRDFVAALKRLSQQGL 69

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           +  +  + L++ R    W V+   +  +P ++++ P+      +   +E++         
Sbjct: 70  SERTLARKLSAWRQYCGWLVQSSMMDNDPTVNLKAPRLPERLPKALPQEELNHMLDNTPA 129

Query: 189 ----GSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELP---- 238
                 +    FE +  SGLR S+     +  +       S+ T K      V L     
Sbjct: 130 DDGLAVRDHALFELMYGSGLRLSEIHGLDLGDVLLDEGWVSV-TGKGRKERQVPLSGKSV 188

Query: 239 DGFMKLL--AMTPIGKETFFINNDKQKMNATQFSIWFKAKATK--AGVNKSAHGVRKFSA 294
           +     L   +   G+   F   +  ++   Q     +A A +  +G + S H +R   A
Sbjct: 189 EALRAYLSERVAADGETALFTGKNGTRLGQRQIQKRLQAWAVQQGSGQHISPHMMRHSYA 248

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324
           +    +      +    G   +   + YTK
Sbjct: 249 SHLLQSSRDIRAVQELLGHSNLSTTQIYTK 278


>gi|296273032|ref|YP_003655663.1| integrase family protein [Arcobacter nitrofigilis DSM 7299]
 gi|296097206|gb|ADG93156.1| integrase family protein [Arcobacter nitrofigilis DSM 7299]
          Length = 312

 Score =  109 bits (273), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 48/304 (15%), Positives = 103/304 (33%), Gaps = 36/304 (11%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVE 124
           +  L+ ++     +  +L   +  ++     Q      I      D  K   K     + 
Sbjct: 3   IDKLLKDFFFHCQFEKNLNPKTLNAYTIDIKQFKAFNNIETLSINDVDKDVLKEYIRHLY 62

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQQFK 183
           S    P S  + L +++  F +   +E + ++P   +    K +    +     ++++  
Sbjct: 63  SIDLKPKSIKRKLATLKSFFNYLEFEEIILVSPFRKMRISIKEQKSLPKTIDIRNIRKLF 122

Query: 184 SF---------------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQ 227
            +               +    +     E L  +GLR S+       ++  +  +I+   
Sbjct: 123 KYVYKIKSNNKETESFSYKTIVRDIAILELLFATGLRVSEVSNMKYSNIDLSSGNIRILG 182

Query: 228 KTGTIITVELPDGFMKLLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATK 279
           K     T+++ D  +KL+               + FFIN    K++    S   K     
Sbjct: 183 KGNKERTIQICDQEVKLILKEYFSLFKDEIYKNKCFFINRLGNKLSEQSISNMIKKYQKN 242

Query: 280 A--GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK---GADRIRLGIK 334
           A  G + + H  R   AT+  + G     +    G  ++   + YT+      +  L  K
Sbjct: 243 ANVGQHLTPHMFRHSFATMLLEEGVDIRYIQGMLGHSSISTTQIYTQINMKQQKKILSTK 302

Query: 335 NSRR 338
           + RR
Sbjct: 303 HPRR 306


>gi|283479604|emb|CAY75520.1| Tyrosine recombinase xerD [Erwinia pyrifoliae DSM 12163]
          Length = 345

 Score =  109 bits (273), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 53/304 (17%), Positives = 108/304 (35%), Gaps = 31/304 (10%)

Query: 64  PRKKPTTLKWLI---SEYRKSAHWGS--LAVNSRISFESYF---DQIIRKSGDFDYRKIT 115
           P   P +L  L+    ++R+  +W    L V +   +       ++ I  + D     + 
Sbjct: 24  PAHDPKSLYALLLRFVKWRRERNWSETTLKVQTHHGYRFICWAQERGIHHAADVTRPVLE 83

Query: 116 T--KHIRSGVESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
              +H+    +      +P +    L  ++V F+W  +Q  +  NP   +E P+ +    
Sbjct: 84  RWQRHLYRYRKGNGEPLSPRTQRTALQPLQVWFRWLAKQNLILANPAADLELPRLEKHLP 143

Query: 172 RP-WTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGV--QHLQNNIFSI 224
           R   + E ++   +        G + R   E L  +G+R  +  R           I +I
Sbjct: 144 RTILSVEQVEDIVNLCDLNTLQGMRDRALLELLWSTGIRRGEVARLETWSADFSRKILTI 203

Query: 225 KTQKTGTIITVELPDGFMKLLA----------MTPIGKETFFINNDK-QKMNATQFSIWF 273
              K      + + +  +  L           +   G +  F+  D    + A   +   
Sbjct: 204 VQGKGKQDRVIPVGERALWWLRHYLHEVRPEIVAVAGCKALFVAMDGVAGLTANGITHAV 263

Query: 274 KAKATKAGVNKSAHGV-RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
                 AG+ K +  + R   AT   + GA    + A  G ++V+  + YT+ + R    
Sbjct: 264 VPYLRAAGIEKGSCXLFRHAMATQMLENGADLRWIQAMLGHRSVESTQXYTQVSIRALQA 323

Query: 333 IKNS 336
           +  S
Sbjct: 324 VHAS 327


>gi|86158112|ref|YP_464897.1| tyrosine recombinase XerD subunit [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|85774623|gb|ABC81460.1| tyrosine recombinase XerD subunit [Anaeromyxobacter dehalogenans
           2CP-C]
          Length = 314

 Score =  109 bits (273), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 39/260 (15%), Positives = 83/260 (31%), Gaps = 22/260 (8%)

Query: 89  VNSRISFESYFDQIIRKSGDFDYRKITTKHIRS---GVESRKHTPSSAIQFLTSMRVLFK 145
                    Y + +  + G   + ++    I++    +  R  +P S  + L+++R L +
Sbjct: 43  EAYGRDLRRYLEHL-DELGVDAWERVGRSEIQAHLAELVRRGLSPRSQARALSAIRSLHR 101

Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FWSEGSQPRLAFEFLLY 201
               +   + +P   +E P+         + +++ +  +      + G + R   E L  
Sbjct: 102 LLAAERVTSADPSDEIESPRPGRRLPGLLSHDEVDRLLAAPDVRSAAGIRDRAMLELLYA 161

Query: 202 SGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKLLAMT----------PI 250
           +GLR S+     +  +       +   K      V +       +               
Sbjct: 162 TGLRVSELVSLQLNDVNLETRVLVARGKGDKERIVPVGAPAADAVKAYLAVARERLLHGR 221

Query: 251 GKETFFINNDKQKMNATQFSIWF--KAKATKAGVNKSAHGVRKFSATISADAGATAHELM 308
             +  F+     +M    F+      A+        S H +R   AT   + GA    + 
Sbjct: 222 RSKDLFVTPRGGRMTRQGFAKILDRCARRAGIRRRISPHKLRHSFATHLLEGGADLRAVQ 281

Query: 309 ATYGWKTVDQAETYTKGADR 328
              G   V   + YT   DR
Sbjct: 282 EMLGHADVSTTQIYTH-VDR 300


>gi|237714827|ref|ZP_04545308.1| site-specific recombinase [Bacteroides sp. D1]
 gi|262406900|ref|ZP_06083449.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294646188|ref|ZP_06723843.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294810609|ref|ZP_06769260.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
 gi|229445152|gb|EEO50943.1| site-specific recombinase [Bacteroides sp. D1]
 gi|262355603|gb|EEZ04694.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292638483|gb|EFF56846.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294442202|gb|EFG11018.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
          Length = 397

 Score =  109 bits (272), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 57/295 (19%), Positives = 107/295 (36%), Gaps = 37/295 (12%)

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-FDYRKITTKHIRSGV 123
           + K   + +L++   +S   GSL  N   +  +   ++    GD   +R I    + S V
Sbjct: 99  KSKANVIDYLMNMRSQSKERGSL--NYEKTVGNTIRELKLFRGDYIAFRDIDKDFLNSFV 156

Query: 124 ESRK-HTPSSAIQFLTS---------------MRVLFKWAVRQEYVAINPCLSVE---RP 164
           +  K    +S    L +               +R     A ++  + +NP    +   + 
Sbjct: 157 DFLKQAKKASKFGLLKAGGVLSNNSVIAYYGVLRTAINRAYKEGIITVNPTKEFDFASKV 216

Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNN 220
           K +       T E++++      +    + AF F    GLR SD  +     L    +  
Sbjct: 217 KAEVSRREYLTIEELKRLIGTECKYEIMKQAFLFSCLCGLRVSDIRKLKWNDLQKSGERI 276

Query: 221 IFSIKTQKTGTIITVELPDGFMKLLAMT--PIGKETFF-INNDKQKMNATQFSIWFKAKA 277
              IK QKT   + + + D  +K L       G +  F + ++         +   +  A
Sbjct: 277 RIEIKMQKTKEPLYLPISDEALKWLPQQNEAKGDDLIFPLTHEG------TINKILQKWA 330

Query: 278 TKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
             AG+  + S H  R   AT+    GA  + +    G K +   + Y K  D+ +
Sbjct: 331 KDAGIIKHISFHVARHTHATMMLTLGADLYTVSKLLGHKNIATTQIYAKIVDKKK 385


>gi|49483415|ref|YP_040639.1| integrase/recombinase [Staphylococcus aureus subsp. aureus MRSA252]
 gi|257425306|ref|ZP_05601731.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257427967|ref|ZP_05604365.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257430600|ref|ZP_05606982.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257433360|ref|ZP_05609718.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257436202|ref|ZP_05612249.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           M876]
 gi|282903807|ref|ZP_06311695.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           C160]
 gi|282905570|ref|ZP_06313425.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282908545|ref|ZP_06316375.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282910824|ref|ZP_06318627.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282914029|ref|ZP_06321816.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           M899]
 gi|282918951|ref|ZP_06326686.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           C427]
 gi|282924074|ref|ZP_06331750.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           C101]
 gi|283957995|ref|ZP_06375446.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|293501061|ref|ZP_06666912.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           58-424]
 gi|293510023|ref|ZP_06668731.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           M809]
 gi|293526609|ref|ZP_06671294.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           M1015]
 gi|295427739|ref|ZP_06820371.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|297591303|ref|ZP_06949941.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus MN8]
 gi|81651263|sp|Q6GHI3|XERC_STAAR RecName: Full=Tyrosine recombinase xerC
 gi|49241544|emb|CAG40230.1| putative integrase/recombinase [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|257271763|gb|EEV03901.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257274808|gb|EEV06295.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257278728|gb|EEV09347.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257281453|gb|EEV11590.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257284484|gb|EEV14604.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           M876]
 gi|282314046|gb|EFB44438.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           C101]
 gi|282316761|gb|EFB47135.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           C427]
 gi|282322097|gb|EFB52421.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           M899]
 gi|282325429|gb|EFB55738.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282327607|gb|EFB57890.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282330862|gb|EFB60376.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282595425|gb|EFC00389.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           C160]
 gi|283790144|gb|EFC28961.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|290920681|gb|EFD97744.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           M1015]
 gi|291096066|gb|EFE26327.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           58-424]
 gi|291466967|gb|EFF09485.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           M809]
 gi|295128097|gb|EFG57731.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|297576189|gb|EFH94905.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus MN8]
 gi|312438369|gb|ADQ77440.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           TCH60]
 gi|315194139|gb|EFU24532.1| putative integrase/recombinase [Staphylococcus aureus subsp. aureus
           CGS00]
 gi|323441030|gb|EGA98737.1| integrase/recombinase [Staphylococcus aureus O11]
 gi|323443899|gb|EGB01510.1| integrase/recombinase [Staphylococcus aureus O46]
          Length = 298

 Score =  109 bits (272), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 37/266 (13%), Positives = 93/266 (34%), Gaps = 22/266 (8%)

Query: 85  GSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVE---SRKHTPSSAIQFLTS 139
            + + ++  S++    Q  +  +           +  R+ +    S     +S  + +++
Sbjct: 16  RNFSEHTLKSYQDDLIQFNQFLEQEHLQLNTFEYRDARNYLSYLYSNHLKRTSVSRKIST 75

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLA 195
           +R  +++ +  +   INP + +  PK++    + + +E+M+       E +    + R+ 
Sbjct: 76  LRTFYEYWMTLDENIINPFVQLVHPKKEKYLPQFFYEEEMEALFKTVEEDTSKSLRDRVI 135

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVE--------LPDGFMKLL 245
            E L  +G+R S+      Q +    N  ++   K      V         + +      
Sbjct: 136 LELLYATGIRVSELVNIKKQDIDFYANGVTV-LGKGSKERFVPFGAYCRQSIENYLEHFK 194

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATK-AGV-NKSAHGVRKFSATISADAGAT 303
            +     +   +N   + +              + AGV     H +R   AT   + GA 
Sbjct: 195 PIQSCNHDFLIVNMKGEAITERGVRYVLNDIVKRTAGVSEIHPHKLRHTFATHLLNQGAD 254

Query: 304 AHELMATYGWKTVDQAETYTKGADRI 329
              + +  G   +     YT  +++ 
Sbjct: 255 LRTVQSLLGHVNLSTTGKYTHVSNQQ 280


>gi|86140290|ref|ZP_01058849.1| putative site-specific recombinase [Leeuwenhoekiella blandensis
           MED217]
 gi|85832232|gb|EAQ50681.1| putative site-specific recombinase [Leeuwenhoekiella blandensis
           MED217]
          Length = 298

 Score =  109 bits (272), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 37/255 (14%), Positives = 88/255 (34%), Gaps = 20/255 (7%)

Query: 90  NSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFLTSMRVLFKW 146
             +   E++F  +       D ++++  ++R+ +        +  S  + ++S++  FK+
Sbjct: 23  AYQKDLEAFFLFLNEHYAVEDPKEVSYVYVRAWIVHLTDVGVSHRSINRKISSLKAFFKF 82

Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG-----SQPRLAFEFLLY 201
             +   + ++P    +  K K E   P+++ ++         G      +          
Sbjct: 83  LQKTGDIEVSPLAKHKSLKIKKEIQVPFSETEVNTVIKMLQSGEDFSELRDLAIVTLFYA 142

Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKETF----- 255
           +G+R S+     V  +  +  +IK   K      + L       L      +E +     
Sbjct: 143 TGMRRSELINLKVADIDFDQHNIKVLGKRNKERIIPLIPWLEDGLKKYLSVRENYGVDKN 202

Query: 256 ----FINNDKQKMNATQFSIWFKAKATKA--GVNKSAHGVRKFSATISADAGATAHELMA 309
                + +   K+  T          ++A      S H +R   AT   + GA  + +  
Sbjct: 203 SGFLLLTDKGDKLYETFVCRIINRYFSRASQKTKTSPHMLRHTFATHLLNNGADLNAVKE 262

Query: 310 TYGWKTVDQAETYTK 324
             G  ++   + YT 
Sbjct: 263 LLGHASLASTQVYTH 277


>gi|256840382|ref|ZP_05545890.1| tyrosine type site-specific recombinase [Parabacteroides sp. D13]
 gi|256737654|gb|EEU50980.1| tyrosine type site-specific recombinase [Parabacteroides sp. D13]
          Length = 376

 Score =  109 bits (272), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 43/218 (19%), Positives = 77/218 (35%), Gaps = 21/218 (9%)

Query: 127 KHTPSSA---IQFLTSMRVLFKWAVRQEYVAINP---CLSVERPKRKTEGIRPWTKEDMQ 180
           K  P SA     +          AVR + +  NP       E+PK         T E+++
Sbjct: 154 KGKPISASTRNTYYQIFNGALNAAVRAKRILKNPFNEMEKSEKPKMPESVRSYMTIEEVR 213

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT----QKTGTIITVE 236
              +   +    + A+ F  + GLR SD      + +  +    +     QKT   I + 
Sbjct: 214 SLIATPMQNEGVKSAYLFSCFCGLRISDIIGLQWKDVFIDNGQYRLAVAMQKTKEPIYLP 273

Query: 237 LPDGFMKLL--AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292
           L +  +K +         +  F          +  +   K  A  AG++K  + H  R  
Sbjct: 274 LSNEALKWMPERGDKTADDHVF-------DLPSGINQLIKPWAKAAGISKRFTFHTARHT 326

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
            AT+    GA  + +    G  +V   + Y K  ++ +
Sbjct: 327 FATMMLTLGADLYTVSKLLGHTSVKMTQVYAKIVNKKK 364


>gi|330998384|ref|ZP_08322208.1| site-specific recombinase, phage integrase family [Paraprevotella
           xylaniphila YIT 11841]
 gi|329568490|gb|EGG50295.1| site-specific recombinase, phage integrase family [Paraprevotella
           xylaniphila YIT 11841]
          Length = 397

 Score =  109 bits (272), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 49/281 (17%), Positives = 98/281 (34%), Gaps = 27/281 (9%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE------ 124
           L W+   Y++S     +  + ++   +  + +   +     R IT     + +       
Sbjct: 109 LDWM-QAYKESQEKKGVRGSGKL-ISNTMNVLRAFNAKATMRDITRDFCLAFINFLRNIY 166

Query: 125 ----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV---ERPKRKTEGIRPWTKE 177
                +K +  + + +    R     AVR+E +A NP   +   E+ K         T +
Sbjct: 167 VSPSGKKLSQFTCVSYFGCFRGALNAAVREEIIAENPVNRLNTDEKIKMPESKREFLTID 226

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTII 233
           +++            + AF F  Y GLR SD      +++ ++      +I  QKT   +
Sbjct: 227 EVKILIDTPCRREDVKGAFLFSCYCGLRISDVLVLKWKNVDSSAEQWRINIIMQKTRQPL 286

Query: 234 TVELPDGFMKLL--AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289
            + L     K +        ++  F             ++  K     AG+ K  + H  
Sbjct: 287 YLPLSMNARKWMPERNGAGDEDLVFPTLP----CEDTCNVQLKPWVKAAGITKHVTYHVS 342

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
           R   AT+    GA  + +    G   V   + Y K  ++ +
Sbjct: 343 RHTFATMLLTLGADLYTVCKLLGHSDVKTTQIYAKIINKKK 383


>gi|313158817|gb|EFR58200.1| phage integrase, N-terminal SAM domain protein [Alistipes sp. HGB5]
          Length = 300

 Score =  109 bits (272), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 47/273 (17%), Positives = 95/273 (34%), Gaps = 28/273 (10%)

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIR----KSGDFDYRKITTKHIRSGV----ESRKHTP 130
             SA     +  +  +++   +Q +         FD R +TT+ IR  +    E  K + 
Sbjct: 8   YLSAE-RRYSPLTVRNYKHDVEQFLAWLDCDESRFDPRSVTTEQIREWIIFRTEEGKLSA 66

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
            S  + + S+R  F+W  R   V  +    +   K          +  M    S     S
Sbjct: 67  GSMNREVASLRAFFRWLHRTGAVEKDIFRMISTLKTSRRLPAFVPESRMTTIVSECGPDS 126

Query: 191 ------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFMK 243
                 +  L        GLR ++           +  S++ +  G     V + +   +
Sbjct: 127 EDFQTERNSLIILMFYACGLRLAELVGIDRSDFSADYTSLRVRGKGDKQRMVPILEFLRE 186

Query: 244 LL----------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRK 291
            +           +    ++  F+ +  ++++ +      + + T+AGV   KS H +R 
Sbjct: 187 KILHYLGLIERQNICISSEKALFLTHKGKRISRSVVYRTVQEELTRAGVQGKKSPHVLRH 246

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK 324
             AT   + GA   E+    G  ++   + YT 
Sbjct: 247 TFATHLLNGGADMREIQELLGHASLQATQVYTH 279


>gi|281425134|ref|ZP_06256047.1| integrase/recombinase XerD [Prevotella oris F0302]
 gi|281400726|gb|EFB31557.1| integrase/recombinase XerD [Prevotella oris F0302]
          Length = 293

 Score =  109 bits (272), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 41/275 (14%), Positives = 104/275 (37%), Gaps = 24/275 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESR-- 126
           +I ++     +  + +  +  ++        +   D +    +  + +  +R+ +E    
Sbjct: 2   MIDKFLDYLRFERNRSELTVKNYGDDLRSFEKFFRDLENPVSWESVDSDVVRNWMERMMD 61

Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF--K 183
             +  +S  + L+++R  +++A+ ++ V  +P   +  PK+     +   +++M +   +
Sbjct: 62  EGNNAASINRRLSALRSFYRFALSRKLVDKDPVHGITGPKKGKPLPQFLKEKEMDRLLER 121

Query: 184 SFWS---EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPD 239
             W+   E  + R        +G+R S+      + +    + +K T K      +   +
Sbjct: 122 KCWTRSFEDVRDRAIIMTFYETGIRLSELTGLDDKMVDFAEYQLKVTGKRNKQRIIPFGE 181

Query: 240 GFMKLL--------AMTPIGKETFFINNDKQKMNATQFSIWFKA-KATKAGVNK-SAHGV 289
                L               E  F+ ++ Q+M+A+      K   +    +NK S H +
Sbjct: 182 ELCTTLRDYMECRDREVDRLSEALFVTDEGQRMSASLVRERVKRSLSKVCTLNKRSPHVL 241

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           R   AT   +  A    +    G +++   E YT 
Sbjct: 242 RHTFATAMLNHKAGIESVKKLLGHESLSTTEIYTH 276


>gi|163741610|ref|ZP_02149001.1| Phage integrase [Phaeobacter gallaeciensis 2.10]
 gi|161385344|gb|EDQ09722.1| Phage integrase [Phaeobacter gallaeciensis 2.10]
          Length = 540

 Score =  109 bits (272), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 53/289 (18%), Positives = 98/289 (33%), Gaps = 27/289 (9%)

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK 117
              I+S      ++  ++ +Y K   + S+   +R  +     ++   +GD     + T+
Sbjct: 235 ERKISSVTPDKNSITAVLEKYCK---FNSIRSGTRSKYRREIARLTAITGDVPLGHVRTE 291

Query: 118 HIRSGVESRKHTP--SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT----EGI 171
            ++   +    T   +S     T ++ +F +A  ++ + +NP L V+ PK K        
Sbjct: 292 DLKQLRDGLIGTIQVASIQAIFTPIKGIFAFAFDEDIIPVNPMLGVKLPKDKRPIEERKW 351

Query: 172 RPWTKEDM----QQFKSFWSEGSQ---------PRLAFEFLLYSGLRCSDSCRAGVQHLQ 218
           + +T  ++       +  WS   Q           +    L YSG+R  +  R     + 
Sbjct: 352 KSFTPTEVIRILNAAEELWSTPVQGLSDARREAIHMVVRVLTYSGMRPVEVIRLEPDDVT 411

Query: 219 NNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKETFF--INNDKQKMNATQFSIWFKA 275
           ++   I   KT  +   V L        A    G    F  I  D+       FS   + 
Sbjct: 412 DSWIRITGSKTESSTRFVPLHPEIADFPAWVASGGLETFQSIKTDQVGSVRHNFSRLLRK 471

Query: 276 KAT--KAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           K         K+ + +R         AGA      A  G K       Y
Sbjct: 472 KMQNPITDPQKALYSLRSTFVNAMRRAGADIQVQRAILGHKEAGAIRHY 520


>gi|82750853|ref|YP_416594.1| integrase/recombinase [Staphylococcus aureus RF122]
 gi|123754641|sp|Q2YXL6|XERC_STAAB RecName: Full=Tyrosine recombinase xerC
 gi|82656384|emb|CAI80803.1| integrase/recombinase [Staphylococcus aureus RF122]
          Length = 298

 Score =  109 bits (272), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 37/267 (13%), Positives = 92/267 (34%), Gaps = 24/267 (8%)

Query: 85  GSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVE---SRKHTPSSAIQFLTS 139
            + + ++  S++    Q  +  +           +  R+ +    S     +S  + +++
Sbjct: 16  RNFSEHTLKSYQDDLIQFNQFLEQEHLQLNTFEYRDARNYLSYLYSNHLKRTSVSRKIST 75

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLA 195
           +R  +++ +  +   INP + +  PK++    + + +E+M+       E +    + R+ 
Sbjct: 76  LRTFYEYWMTLDENIINPFVQLVHPKKEKYLPQFFYEEEMEALFKTVEEDTSKSLRDRVI 135

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQ---NNIFSIKTQKTGTIITVE--------LPDGFMKL 244
            E L  +G+R S+      Q +    N +      K      V         + +     
Sbjct: 136 LELLYATGIRVSELVNIKKQDIDFYANGVTVF--GKGSKERFVPFGAYCRQSIENYLEHF 193

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK-AGV-NKSAHGVRKFSATISADAGA 302
             +     +   +N   + +              + AGV     H +R   AT   + GA
Sbjct: 194 KPIQSCNHDFLIVNMKGEAITERGVRYVLNDIVKRTAGVSEIHPHKLRHTFATHLLNQGA 253

Query: 303 TAHELMATYGWKTVDQAETYTKGADRI 329
               + +  G   +     YT  +++ 
Sbjct: 254 DLRTVQSLLGHVNLSTTGKYTHVSNQQ 280


>gi|261417486|ref|YP_003251169.1| integrase family protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261373942|gb|ACX76687.1| integrase family protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302327853|gb|ADL27054.1| site-specific recombinase, phage integrase family [Fibrobacter
           succinogenes subsp. succinogenes S85]
          Length = 297

 Score =  109 bits (272), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 40/259 (15%), Positives = 86/259 (33%), Gaps = 20/259 (7%)

Query: 85  GSLAVNSRISFE---SYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHTPSSAIQFL 137
            +L+  +  S++    +F   + ++G  D + +  + +   +       +++P+S  +  
Sbjct: 19  RNLSPVTIQSYQEDLRHFIAWLDENG-IDLKDLQPEKLDEFLTLTAGQEEYSPTSVARHF 77

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG---SQPRL 194
           +S+R   K+   Q     +    +  PK      +  T+E++       + G    +   
Sbjct: 78  SSLRGFLKYMQIQGEYDYSTESMLATPKLGHYLPQYLTREEIDSVFESAANGKNPLRDTA 137

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAM------ 247
             E +   GLR S++    +  +   N + +   K      V L     + L        
Sbjct: 138 LIELMYSGGLRISEALGIKLSQIDLENEWLMPIGKGNKQRLVPLGSKAKENLRAWIEEGR 197

Query: 248 --TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAH 305
             T    +   +N   + M+        +          S H  R   AT   +AG    
Sbjct: 198 PLTHPTTDNIILNAHGKPMSRMGAWKIVQLHTMHLSKQVSPHTFRHSFATHCLEAGMDLR 257

Query: 306 ELMATYGWKTVDQAETYTK 324
            L    G   +   + YT 
Sbjct: 258 VLQELLGHADISTTQIYTH 276


>gi|241764726|ref|ZP_04762736.1| integrase family protein [Acidovorax delafieldii 2AN]
 gi|241365779|gb|EER60442.1| integrase family protein [Acidovorax delafieldii 2AN]
          Length = 335

 Score =  109 bits (272), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 53/339 (15%), Positives = 110/339 (32%), Gaps = 37/339 (10%)

Query: 10  FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
           +      R G   YYF KG   R  +    +        S L  +  K+   N       
Sbjct: 3   YFRSRTHRSGTTYYYFDKGGKPRKEIALGKDYVMAVRKWSELIAAEEKKAVAN------- 55

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126
             + L  +Y +       A +++    S    +             +I   HI + ++ +
Sbjct: 56  -FRDLADKYEREVVPLK-AKSTQTLQASDIKLLREFFCTPSPAPLDEIKPSHIHALLQWK 113

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAI-NPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           KH   +A +   +   +F  A    Y    NPC  ++    K         +++  +++ 
Sbjct: 114 KHQAPTANRLKRTFSHMFNMARAWGYTEKANPCAGIKGLPVKKREQYI--TDEV--YRAV 169

Query: 186 WSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
           W+  + P R A +    +G R +D+       +++    +   KTG  + + +      L
Sbjct: 170 WNVAAWPLRDAMDLAYLTGQRPADTVGMTDDDIEDGRLKVTQGKTGAKLRIRIEGELAVL 229

Query: 245 LAMTPIGKE-------TFFINNDKQKMNATQFSIWFKAKATKAG----------VNKSAH 287
           L      K+       +  +N   + ++       +K   TKA                +
Sbjct: 230 LDRIKARKDACKMWSASLVVNQAGESLSQKALGEVYKRARTKAAKLNPKLADQIKTMRFY 289

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKG 325
            +R  +A   ++    A       G  +V   +  Y + 
Sbjct: 290 DLRAKAADDVSEVRGEAAA-AELLGHDSVTTTQRHYLRK 327


>gi|299822639|ref|ZP_07054525.1| tyrosine recombinase XerC [Listeria grayi DSM 20601]
 gi|299816168|gb|EFI83406.1| tyrosine recombinase XerC [Listeria grayi DSM 20601]
          Length = 304

 Score =  109 bits (272), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 39/245 (15%), Positives = 85/245 (34%), Gaps = 22/245 (8%)

Query: 100 DQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL 159
           ++II      D R +  +   + +  ++++ S+  + L+S+R  + + +R + +A NP  
Sbjct: 45  EEIIESL--TDVRYLEVRVYLTRLREKEYSRSTVSRKLSSLRSFYTFLLRDQQIAENPFS 102

Query: 160 SVERPKRKTEGIRPWTKEDMQQFKSFWS-----EGSQPRLAFEFLLYSGLRCSDSCRAGV 214
            V   K      + +  E+M+   +           + R   E L  +G+R S+     +
Sbjct: 103 YVSHSKNHLRLPKFFYSEEMEALFTVVYQDDKLLTLRNRALLEILYGTGIRVSECADIRL 162

Query: 215 QHLQNNIFSIKTQKTGTI-------------ITVELPDGFMKLLAMTPIGKETFFINNDK 261
             +     SI  +  G               + + L      L+       +  F+N+  
Sbjct: 163 ADIDATYQSILIRGKGNKERYVPFGAYAEDAVQLYLEASRKALMEKYHKEHDYLFVNHYG 222

Query: 262 QKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
             +               A + +    H +R   AT   + GA    +    G  ++   
Sbjct: 223 DPLTPRGIRYCLSKTIESAAMTRKIHPHMLRHTFATDLLNNGADMRTVQELLGHASLSST 282

Query: 320 ETYTK 324
           + YT 
Sbjct: 283 QIYTH 287


>gi|189423412|ref|YP_001950589.1| tyrosine recombinase XerC [Geobacter lovleyi SZ]
 gi|254799343|sp|B3E1H7|XERC_GEOLS RecName: Full=Tyrosine recombinase xerC
 gi|189419671|gb|ACD94069.1| tyrosine recombinase XerC [Geobacter lovleyi SZ]
          Length = 317

 Score =  109 bits (272), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 44/217 (20%), Positives = 75/217 (34%), Gaps = 21/217 (9%)

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED-MQQFKS----- 184
           SS  + L ++R  F W VR   + +NP   +  PKR+         +  +   ++     
Sbjct: 80  SSIGRKLAAVRAFFGWLVRTRQLEVNPAELIATPKREQRLPFHLNIDQTVTLIEAPGHTG 139

Query: 185 -FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFM 242
                 ++     E L  SGLR S+     V  L      ++   K G    V +    +
Sbjct: 140 QEQPTFARDTAILELLYSSGLRVSELTGLAVADLDRAAGMVRVQGKGGKERIVPVGSAAL 199

Query: 243 KLL------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK----SAHGVRKF 292
           + L                F+     ++N    +   K  A+  G+      S H +R  
Sbjct: 200 EALEQYLAGRGQLADDAPLFLGCRGARINRRTVAQLVKRWAS--GIPAFRSISPHTLRHT 257

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK-GADR 328
            AT   + GA    +    G  ++   + YT  G DR
Sbjct: 258 FATHMLEGGADLRSIQELLGHSSLSTTQKYTHVGLDR 294


>gi|148984624|ref|ZP_01817892.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP3-BS71]
 gi|148997026|ref|ZP_01824680.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP11-BS70]
 gi|149007165|ref|ZP_01830829.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP18-BS74]
 gi|149010476|ref|ZP_01831847.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP19-BS75]
 gi|168484778|ref|ZP_02709723.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae CDC1873-00]
 gi|168575549|ref|ZP_02721485.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae MLV-016]
 gi|169832442|ref|YP_001694344.1| phage integrase family integrase/recombinase [Streptococcus
           pneumoniae Hungary19A-6]
 gi|194397446|ref|YP_002037527.1| phage integrase family integrase/recombinase [Streptococcus
           pneumoniae G54]
 gi|221231667|ref|YP_002510819.1| putative integrase/recombinase [Streptococcus pneumoniae ATCC
           700669]
 gi|225854397|ref|YP_002735909.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae JJA]
 gi|225856554|ref|YP_002738065.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae P1031]
 gi|307067543|ref|YP_003876509.1| integrase [Streptococcus pneumoniae AP200]
 gi|147756726|gb|EDK63766.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP11-BS70]
 gi|147761203|gb|EDK68170.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP18-BS74]
 gi|147764957|gb|EDK71886.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP19-BS75]
 gi|147923015|gb|EDK74130.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP3-BS71]
 gi|168994944|gb|ACA35556.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae Hungary19A-6]
 gi|172042056|gb|EDT50102.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae CDC1873-00]
 gi|183578532|gb|EDT99060.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae MLV-016]
 gi|194357113|gb|ACF55561.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae G54]
 gi|220674127|emb|CAR68646.1| putative integrase/recombinase [Streptococcus pneumoniae ATCC
           700669]
 gi|225723828|gb|ACO19681.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae JJA]
 gi|225725861|gb|ACO21713.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae P1031]
 gi|301799879|emb|CBW32455.1| putative integrase/recombinase [Streptococcus pneumoniae OXC141]
 gi|306409080|gb|ADM84507.1| Integrase [Streptococcus pneumoniae AP200]
          Length = 321

 Score =  109 bits (272), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 36/275 (13%), Positives = 91/275 (33%), Gaps = 14/275 (5%)

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
           ++  +++  +   L+  +  +      +  +   ++   + +          ++TT  +R
Sbjct: 33  VDGKKQQKYSNNNLLQLFITAKQVEGCSSKTIRYYQRTIENLFNAI-KESVTQLTTDDLR 91

Query: 121 SGVESRKH----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
           S + + +     + ++       +   F W  ++EY+  NP   +++ K +      +T 
Sbjct: 92  SYLANYQSEKDCSKANLDNIRRILSSFFAWLEQEEYIIKNPIRRIKKIKTEQNVKETYTD 151

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITV 235
           E ++  +    E  +     + L  +G+R  +  +     +   N   +   K      V
Sbjct: 152 EHLEIMRDNC-ENLRDLAIIDLLASTGMRVGELVQLNRSDIDFENRECVVFGKGKKERPV 210

Query: 236 ELPDG----FMKLLAMTPIGKETFFINNDKQ--KMNATQFSIWFKAKATKAGVNK-SAHG 288
                        L          F+    +  ++      I  +    K G+ K   H 
Sbjct: 211 YFDARTKIHLRNYLNDRKDSHPALFVTLVGKAQRLGIAGVEIRLRKLGDKLGIQKVHPHK 270

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
            R+  AT + D G    ++    G   +D    Y 
Sbjct: 271 FRRTLATKAIDKGMPIEQVQKLLGHSKIDTTLAYA 305


>gi|237711657|ref|ZP_04542138.1| tyrosine type site-specific recombinase [Bacteroides sp. 9_1_42FAA]
 gi|237725901|ref|ZP_04556382.1| tyrosine type site-specific recombinase [Bacteroides sp. D4]
 gi|265753077|ref|ZP_06088646.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_33FAA]
 gi|229435709|gb|EEO45786.1| tyrosine type site-specific recombinase [Bacteroides dorei
           5_1_36/D4]
 gi|229454352|gb|EEO60073.1| tyrosine type site-specific recombinase [Bacteroides sp. 9_1_42FAA]
 gi|263236263|gb|EEZ21758.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_33FAA]
          Length = 293

 Score =  109 bits (272), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 39/265 (14%), Positives = 94/265 (35%), Gaps = 24/265 (9%)

Query: 76  SEYRKSAHW-GSLAVNSRISFESYF----DQIIRKSGDFDYRKITTKHIRSGVESR---K 127
             +     +  + +  + +S+        + I  K  + D+  +    +R  V +     
Sbjct: 4   DSFLDYLRFERNYSEKTIVSYGIDLIKFEEYIRGKDENVDFTTVDADLVRGWVMNLIEDG 63

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           +T +S  + L+S+R  +++ +++  +  +P L +  PK K        + +M +      
Sbjct: 64  YTSASVNRKLSSLRSFYRFLLKKGVIGEDPMLKIIGPKNKKPLPVFLKEREMDRLLDDVP 123

Query: 188 -----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGF 241
                 G + R+  E    +G+R S+        +  +   IK T K      +   +  
Sbjct: 124 FKEDFTGCRDRMVLEMFYATGMRLSELIGLNDVDVDFSASLIKVTGKRNKQRLIPFGEEL 183

Query: 242 MKLL--------AMTPIGKETFFINNDKQKMNATQFSIWFKA--KATKAGVNKSAHGVRK 291
            + +         + P     FF+  + ++M   +  +  K       +   +S H +R 
Sbjct: 184 RRAMFVYLKIRNEVLPGKAGAFFVLKNGKRMYPGKVYLLVKRNLSKVVSLKKRSPHVLRH 243

Query: 292 FSATISADAGATAHELMATYGWKTV 316
             AT   +  A    +    G  ++
Sbjct: 244 TFATAMLNNEAELGAVKELLGHSSL 268


>gi|57238849|ref|YP_179985.1| tyrosine recombinase xerD [Ehrlichia ruminantium str. Welgevonden]
 gi|58578779|ref|YP_196991.1| tyrosine recombinase xerD [Ehrlichia ruminantium str. Welgevonden]
 gi|57160928|emb|CAH57833.1| putative integrase/recombinase XerD or XerC [Ehrlichia ruminantium
           str. Welgevonden]
 gi|58417405|emb|CAI26609.1| Tyrosine recombinase xerD [Ehrlichia ruminantium str. Welgevonden]
          Length = 312

 Score =  109 bits (272), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 42/273 (15%), Positives = 95/273 (34%), Gaps = 33/273 (12%)

Query: 90  NSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVESRKHTPSSAIQFLTSMRVLF 144
           N+  S+ S    + +     +   I       K     +  R++  S+  + +++++ L+
Sbjct: 24  NTYQSYMSDLLDLCKFFDCKNLALIEVSRDDLKDYVRLMHKREYKSSTISRKISAIKNLY 83

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-----SEGSQPRLAFEFL 199
           K+  +   +A +P LS++ P+      +    E++ +           +G +       L
Sbjct: 84  KFFCKDNIIAYDPALSIDFPRLSRTLPKALNIEEVSRLLDTAALDSSPDGLRTNAIINIL 143

Query: 200 LYSGLRCSDSCRAGV---------QHLQNNIFSIKTQKTGTIIT-------VELPDGFMK 243
             SG+R S+     +          +++ +  +I+ +     I        V +      
Sbjct: 144 YSSGIRVSELIYLKLNSIKEALNNDNIEISYITIRGKANRERIVLLNSSAIVSIQKYLEV 203

Query: 244 LLAMTPIGKE----TFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATI 296
            +   P G E     F        +   +     K  +  AGV+    S H +R   AT 
Sbjct: 204 YMHFVPNGYEISQWLFPGTKFDNPITRQRIGQLLKDLSISAGVDMTRISPHKLRHSFATH 263

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             + G+    +    G  ++   + YT  A+  
Sbjct: 264 LLNNGSDIIFIQKMLGHTSLSTTQIYTYVANEK 296


>gi|299769077|ref|YP_003731103.1| site-specific tyrosine recombinase [Acinetobacter sp. DR1]
 gi|298699165|gb|ADI89730.1| site-specific tyrosine recombinase [Acinetobacter sp. DR1]
          Length = 310

 Score =  109 bits (272), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 50/279 (17%), Positives = 98/279 (35%), Gaps = 27/279 (9%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVESR---- 126
            L+S + K     + + ++  ++E      +   +    D R I    +R  +  R    
Sbjct: 10  QLLSMWLKERKIQNQSEHTITAYERDVKSFLEFCELKQIDLRNIEASDLREYLAQRVEQD 69

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185
           + + SS  + LTS+R   KWA + +Y+ INP    +  ++          E + Q     
Sbjct: 70  QLSSSSMQRHLTSIRQFMKWAEQGKYLEINPTDDFKLKRQPRPLPGMIDIETVNQILDQS 129

Query: 186 -------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV--- 235
                       + +   E L  SGLR ++     ++ +  N   ++    G    +   
Sbjct: 130 MPEKPIDQQLWLRDKAMLELLYSSGLRLAELQGLTIKDIDFNRQLVRITGKGNKTRIVPF 189

Query: 236 --ELPDGFMKLLAMTPIGKETF------FINNDKQKMNATQFSIWFKAKATKAGV--NKS 285
             +  +  +  L +  I K  F      FI+     +   Q     K +A +AGV  +  
Sbjct: 190 GKKAKESLLNWLKIYKIWKGHFDQNAFVFISQRGGALTPRQIEKRVKLQAQRAGVNVDLH 249

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            H +R   A+    +      +    G   +   + YT 
Sbjct: 250 PHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTH 288


>gi|229176440|ref|ZP_04303876.1| Site-specific recombinase, phage integrase [Bacillus cereus MM3]
 gi|228607031|gb|EEK64417.1| Site-specific recombinase, phage integrase [Bacillus cereus MM3]
          Length = 322

 Score =  109 bits (272), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 42/284 (14%), Positives = 91/284 (32%), Gaps = 28/284 (9%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES---RKHTPSSAIQFLTSMRV 142
                +   +   F   +R+        IT  H++  +     R+  P++    +++++ 
Sbjct: 41  GFRKRTIDDYSKLFRYFMRELNIEKVEIITAAHVQMYINKLLNRELAPATVNIRISALKS 100

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLAFEF 198
           +FK      Y+  NP +   + +     I       +++           G +   A   
Sbjct: 101 VFKRLNELGYIKSNPAVDFVKLRTDEAPIFTLNHNQIKRIFRVVDKTTYAGYRDYCAMLL 160

Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQ----KTGTIITVELPDGFMKLLAMTPIGKET 254
           +L+ GLR ++  +     +  +  +I       K      V +     + L M       
Sbjct: 161 MLHCGLRVNEVNQLEANDIDFDNLTIMLAGAKNKNRKTRAVPMTKKVAEELRMLIDESRE 220

Query: 255 FF-------INNDKQKMNATQFSIWFKAKATKAGVNK----SAHGVRKFSATISADAGAT 303
           +F       +  + + ++            T AG+ K    S H +R   AT     G +
Sbjct: 221 YFEGVTNVFLTQEGKVIDNDLLRKRMYRYGTLAGLLKECRPSPHSLRHTFATNFLRNGGS 280

Query: 304 AHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
            + LM   G   +     Y       RL  +  +     V + +
Sbjct: 281 VNALMRIMGHADITTTMRYV------RLNDEAVKEQYEKVAAKN 318


>gi|194367246|ref|YP_002029856.1| site-specific tyrosine recombinase XerC [Stenotrophomonas
           maltophilia R551-3]
 gi|194350050|gb|ACF53173.1| tyrosine recombinase XerC [Stenotrophomonas maltophilia R551-3]
          Length = 296

 Score =  109 bits (272), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 35/255 (13%), Positives = 79/255 (30%), Gaps = 15/255 (5%)

Query: 85  GSLAVNSRISFESYFDQII-----RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
             ++ ++  ++    D +      R          T +   +    R  +  S  + L++
Sbjct: 15  RRMSAHTLDAYRRDLDALSVWAEPRGMAVEALDAETLRQFVADEHRRGLSAKSLQRRLSA 74

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS---QPRLAF 196
            R  + W ++   + +NP  +++ P+      +    ++  Q      EG    + R   
Sbjct: 75  CRSFYAWLLKHGRIEVNPAATLKAPRAPRRLPQVLDADEAVQLVELEPEGELGRRDRALL 134

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-----VELPDGFMKLLAMTPIG 251
           E    SGLR S+ C    + L      +     G             +      A +  G
Sbjct: 135 ELFYSSGLRLSEVCALTWRDLDFASGLVNVMGKGNRQRRVPFGRPAREALQAWRAESGGG 194

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMA 309
                       ++     I  +  A + G+  +   H +R   A+   ++      +  
Sbjct: 195 PAMPVFPGRNGPISQRAVQIRIRQLAQRQGLFKHVHPHMLRHSFASHILESSGDLRGVQE 254

Query: 310 TYGWKTVDQAETYTK 324
             G   +   + YT 
Sbjct: 255 LLGHADIATTQIYTH 269


>gi|71042119|pdb|1Z19|A Chain A, Crystal Structure Of A Lambda Integrase(75-356) Dimer
           Bound To A Coc' Core Site
 gi|71042120|pdb|1Z19|B Chain B, Crystal Structure Of A Lambda Integrase(75-356) Dimer
           Bound To A Coc' Core Site
          Length = 283

 Score =  109 bits (272), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 50/277 (18%), Positives = 96/277 (34%), Gaps = 19/277 (6%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH- 128
           TL   +  Y K      +   + I++ S    I R   D     ITTK I + +      
Sbjct: 2   TLHSWLDRYEKILASRGIKQKTLINYXSKIKAIRRGLPDAPLEDITTKEIAAXLNGYIDE 61

Query: 129 -TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              +SA    +++   F+ A+ + ++  N   +    K K    R    E ++ +++  S
Sbjct: 62  GKAASAKLIRSTLSDAFREAIAEGHITTNHVAATRAAKSKVRRSRLTADEYLKIYQAAES 121

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE---------LP 238
                RLA E  + +G R  D C      + +    ++  KTG  I +          + 
Sbjct: 122 SPCWLRLAXELAVVTGQRVGDLCEXKWSDIVDGYLYVEQSKTGVKIAIPTALHIDALGIS 181

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NKSAHGVRKFS 293
                      +G ET   +  ++ +++   S +F      +G+       + H +R   
Sbjct: 182 XKETLDKCKEILGGETIIASTRREPLSSGTVSRYFXRARKASGLSFEGDPPTFHELR-SL 240

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
           +    +   +        G K+   A       DR R
Sbjct: 241 SARLYEKQISDKFAQHLLGHKSDTXASQ--XRDDRGR 275


>gi|283479611|emb|CAY75527.1| Tyrosine recombinase xerD [Erwinia pyrifoliae DSM 12163]
          Length = 344

 Score =  109 bits (272), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 52/304 (17%), Positives = 107/304 (35%), Gaps = 31/304 (10%)

Query: 64  PRKKPTTLKWLISEY---RKSAHWGS--LAVNSRISFESYF---DQIIRKSGDFDYRKIT 115
           P   P +L  L+  +   R+  +W    L V +   +       ++ I  + D     + 
Sbjct: 24  PAHDPKSLYALLLRFVKWRRERNWSETTLKVQTHHGYRFICWAQERGIHHAADVTRPVLE 83

Query: 116 T--KHIRSGVESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
              +H+    +      +P +    L  ++V F+W  +Q  +  NP   +E P+ +    
Sbjct: 84  RWQRHLYRYRKGNGEPLSPRTQRTALQPLQVWFRWLAKQNLILANPAADLELPRLEKHLP 143

Query: 172 RP-WTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGV--QHLQNNIFSI 224
           R   + E ++   +        G + R   E L  +G+R  +  R           I +I
Sbjct: 144 RTILSVEQVEDIVNLCDLNTLQGMRDRALLELLWSTGIRRGEVARLETWSADFSRKILTI 203

Query: 225 KTQKTGTIITVELPDGFMKLLA----------MTPIGKETFFINNDK-QKMNATQFSIWF 273
              K      + + +  +  L           +   G +  F+  D    + A   +   
Sbjct: 204 VQGKGKQDRVIPVGERALWWLRHYLHEVRPEIVAVAGCKALFVAMDGVAGLTANGITHAV 263

Query: 274 KAKATKAGVNKSAHGV-RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
                 AG+ K +  + R   AT   + GA    + A  G ++V+  + YT+ + +    
Sbjct: 264 VPYLRAAGIEKGSCXLFRHAMATQMLENGADLRWIQAMLGHRSVESTQIYTQVSIKALQA 323

Query: 333 IKNS 336
           +  S
Sbjct: 324 VHAS 327


>gi|309810567|ref|ZP_07704384.1| site-specific recombinase, phage integrase family [Dermacoccus sp.
           Ellin185]
 gi|308435481|gb|EFP59296.1| site-specific recombinase, phage integrase family [Dermacoccus sp.
           Ellin185]
          Length = 422

 Score =  109 bits (272), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 59/299 (19%), Positives = 107/299 (35%), Gaps = 30/299 (10%)

Query: 55  TPKREYINSPRKKPTTLKWLISEY--RKSAHWGSLAVNSRISFESYFDQIIR-KSGDFDY 111
           TP     N PRK   TL     E+  R+      L   +R  ++  +   ++   GD   
Sbjct: 63  TPPSVRANRPRKGDPTLAEWWPEFIERRRVDGEPLRPTTRAWYDQLYRHYLKPTLGDVPL 122

Query: 112 RKITTKHIRSGVESRKHTPSSAIQ--FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
           + IT   +++  +       S+++     ++R     A+ +  +  NPC  ++  ++K  
Sbjct: 123 KGITAARVKAWWDDFPTDRGSSVRPNAYMALRAAMSQALEEGLIITNPCT-IKVQRKKKR 181

Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229
            +   T+E +    S   E   P        + GLR  +        +     +I+ ++ 
Sbjct: 182 ELEVATREQVATIHSHMPEAFAP--IVTIAAWCGLRFGEIIELRRGDIDLARRTIRVERA 239

Query: 230 GTII----------------TVELP----DGFMKLLAMTPIGKETFFINND-KQKMNATQ 268
            + +                TV +P    D   + L      +    +       +   Q
Sbjct: 240 VSRVHGKFIVGPPKSDAGIRTVSMPTAVADELEQHLERHVRPEPDALVFEYCGHHLQQPQ 299

Query: 269 FSIWFKAKATKAG-VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           FSIW++     AG  +   H +R  SA   A  GAT  +LMA  G  +   A  Y   A
Sbjct: 300 FSIWWRYARGMAGRPDLRLHDLRHTSAVWYAQQGATLADLMARLGHSSPTMALHYQHAA 358


>gi|86751622|ref|YP_488118.1| Phage integrase [Rhodopseudomonas palustris HaA2]
 gi|86574650|gb|ABD09207.1| tyrosine recombinase XerD subunit [Rhodopseudomonas palustris HaA2]
          Length = 310

 Score =  109 bits (272), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 50/279 (17%), Positives = 103/279 (36%), Gaps = 36/279 (12%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRK--------ITTKHIRSGVE---SRKHTPSSA 133
             L+ ++  ++           G    +         I T H+R+ +E    RK + ++ 
Sbjct: 18  RQLSDHTLQAYGYDLADFAAWVGTRRRKDKAFSAGAPIETDHLRAYLEHMTERKLSAATV 77

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLS--VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
            + L  +R  F++   +  +  NP     ++ PKRK    R  ++++  Q          
Sbjct: 78  RRRLACLRSFFRYLEDRGTMP-NPFDGWRLKLPKRK-RLPRTLSRDETTQLLKSARAPGA 135

Query: 192 PRLA----------FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-ITVELPD- 239
            R A             ++ +G+R  + C+     + ++  +I+    G+    V + D 
Sbjct: 136 ARHAAPESPSLCTEIRLMIATGIRIGELCKIASTDVSSDGAAIRIHGKGSRDRMVYVTDN 195

Query: 240 -------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290
                      L   T  G    F+N +  K+    F    +  A +AGV +  + H +R
Sbjct: 196 GLRAELRKLAVLRQRTLGGDGPLFLNRNGDKLRPHSFRAKLRNFAGQAGVRRRVTPHMLR 255

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             +AT+  ++G     +    G  ++   E YT  +D  
Sbjct: 256 HTAATLLIESGVDIRIVQRLLGHSSIATTEIYTHVSDEA 294


>gi|260912682|ref|ZP_05919168.1| tyrosine recombinase XerC [Pasteurella dagmatis ATCC 43325]
 gi|260633060|gb|EEX51225.1| tyrosine recombinase XerC [Pasteurella dagmatis ATCC 43325]
          Length = 296

 Score =  109 bits (272), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 41/273 (15%), Positives = 98/273 (35%), Gaps = 23/273 (8%)

Query: 74  LISEYRKSAH-WGSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSGVES---- 125
           L+ +Y         ++ ++  +++   ++I++   ++G   ++++T   +R  +      
Sbjct: 4   LLEKYWNYLRIERQVSPHTLSNYQRQLNRIVQILNENGMTSWQEVTPSVVRFILAESSKT 63

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS- 184
            K    S    L+++R    + V+Q+ + +N    +  PK+     +    E +Q+  S 
Sbjct: 64  DKLHEKSLALRLSALRRFLTYLVQQDELKVNAATGISAPKQGRHLPKNIDAEQVQKLLSN 123

Query: 185 --FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV------- 235
                   + R   E L  SGLR S+     +  +   +  ++    G    +       
Sbjct: 124 DSKEPIDIRDRAILELLYSSGLRLSELQGLNLNSINTRVREVRVIGKGNKERIVPFGRYA 183

Query: 236 --ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRK 291
              +       L   P   +  F++    ++         +    K G+N   + H +R 
Sbjct: 184 SHAIQQWLKVRLLFNP-KDDALFVSQLGNRLTHRTIQKRLEVWGIKQGLNSHLNPHKLRH 242

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK 324
             AT   +A +    +    G   +   + YT 
Sbjct: 243 SFATHMLEASSDLRAVQELLGHSNLSTTQIYTH 275


>gi|114705350|ref|ZP_01438258.1| tyrosine recombinase [Fulvimarina pelagi HTCC2506]
 gi|114540135|gb|EAU43255.1| tyrosine recombinase [Fulvimarina pelagi HTCC2506]
          Length = 323

 Score =  109 bits (272), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 40/286 (13%), Positives = 93/286 (32%), Gaps = 33/286 (11%)

Query: 72  KWLISEYRKSAH-WGSLAVNSRISFESYFDQ----IIRKSGDFDYRKITTKHIRSGVESR 126
             +I  + +        A N+  ++    D     +    G         +   + + + 
Sbjct: 16  GAVIEAFLEMMAVERGAADNTLQAYARDLDAARSFLKPHGGLMRADSDAIRAYLTSLSAE 75

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             + S+  + L+++R L+++   +     +P   +E  ++K    +  +++++ +     
Sbjct: 76  GLSESTRSRRLSALRQLYRFLYTEGRRTDDPTSPIEGARKKRPLPKVMSEDEVDRLLDLA 135

Query: 187 SEGS--------------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGT 231
              +              + R+  E L  +GLR S+        L N   +I    K   
Sbjct: 136 EAETNDAELSPSSRVRAIRLRVLVELLYATGLRVSELVSLPKSMLVNRARTITVLGKGNK 195

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDK----------QKMNATQFSIWFKAKATKAG 281
              V +     + L       +   +NN+             ++   F+   K  A + G
Sbjct: 196 ERLVPIGAAARESLDAYGQALKAAGLNNEGPWLFPADSESGHLSRQVFARELKGLAARTG 255

Query: 282 V---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +     S H +R   A+     GA    +    G   +   + YT 
Sbjct: 256 ISAAKISPHVLRHAFASHLLQNGADLRAVQELLGHADISTTQIYTH 301


>gi|313901986|ref|ZP_07835402.1| integrase family protein [Thermaerobacter subterraneus DSM 13965]
 gi|313467775|gb|EFR63273.1| integrase family protein [Thermaerobacter subterraneus DSM 13965]
          Length = 380

 Score =  109 bits (272), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 51/304 (16%), Positives = 100/304 (32%), Gaps = 38/304 (12%)

Query: 65  RKKPTTL--KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD------YRKIT 115
           R    +L    ++  Y         L+  +  ++       ++  G            ++
Sbjct: 14  RIPAGSLPAADVVEAYLDHLRLERGLSPRTVEAYAGDLAGWLQFLGLEPPVGAAALAGVS 73

Query: 116 TKHIRSGV---ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
            + +R  +   E R    +S  + L ++R LF++AVR+ ++A +P   +  P+ +    R
Sbjct: 74  GRDLRRWLAHLEERGLARASVARKLAAVRGLFRYAVREGWLAASPAARLATPRLRRRLPR 133

Query: 173 PWTKEDMQQFKS-----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT- 226
            +T E+ Q               + R   E L   GLR ++     +  +      ++  
Sbjct: 134 VYTPEEAQALLEAAASGHGPAALRDRAILELLYGCGLRVAELSGLDLDDVDLEGGWLRVY 193

Query: 227 QKTGTIITVELPDGFMKLLAM------------------TPIGKETFFINNDKQKMNATQ 268
            K G    + L       L                     P   +  F+N    +++   
Sbjct: 194 GKGGKERILPLAGPVAAALRAYLEEGRPGFLEGRRHRPCRPADAQAVFLNRWGGRLSPRG 253

Query: 269 FSIWFKAK-ATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
                +   A  A +    H +R   AT   D GA    +    G  ++   + YT    
Sbjct: 254 IQAIVRRVGAVVARLQAHPHLLRHTFATHLLDGGAGLRAVQELLGHASLAATQVYTH-VS 312

Query: 328 RIRL 331
           R RL
Sbjct: 313 RARL 316


>gi|326382897|ref|ZP_08204587.1| site-specific tyrosine recombinase XerC [Gordonia neofelifaecis
           NRRL B-59395]
 gi|326198487|gb|EGD55671.1| site-specific tyrosine recombinase XerC [Gordonia neofelifaecis
           NRRL B-59395]
          Length = 297

 Score =  109 bits (272), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 37/269 (13%), Positives = 83/269 (30%), Gaps = 26/269 (9%)

Query: 88  AVNSRISFESYFDQIIRKSGDF-----DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRV 142
           + ++  ++      ++  +G       D      +   +    R    ++  + ++S + 
Sbjct: 19  SKHTVRAYTGDIRGLVAFAGARGVEVGDLDLPLLRAWLAEHARRGAARTTIARQVSSAKT 78

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---------SEGSQPR 193
              WAVR+  +  +P   ++ PK           E                      + R
Sbjct: 79  FCAWAVREGVLQTDPAQRLQAPKSHRVLPAVLAPEQAAAAVDGAAGDSAGDGDPVAFRDR 138

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE--------LPDGFMK- 243
           +  E L   G+R  + C   +  +  +   I+   K     +V         L D   + 
Sbjct: 139 VILELLYSCGIRVGELCGLDLGDVDADRRVIRVIGKGDKQRSVPYGGPAAAALDDWLRRG 198

Query: 244 -LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGA 302
                T    +   +     +++              AG +   H +R  +AT   + GA
Sbjct: 199 RSALATAASGDALLLGVKGGRLDQRMARTVVHRATETAGQSVGPHALRHSAATHLLEGGA 258

Query: 303 TAHELMATYGWKTVDQAETYTK-GADRIR 330
               +    G  ++   + YT    +R+R
Sbjct: 259 DLRVVQELLGHSSLATTQLYTHVSVERLR 287


>gi|66044755|ref|YP_234596.1| Phage integrase:Phage integrase, N-terminal SAM-like [Pseudomonas
           syringae pv. syringae B728a]
 gi|63255462|gb|AAY36558.1| Phage integrase:Phage integrase, N-terminal SAM-like [Pseudomonas
           syringae pv. syringae B728a]
          Length = 319

 Score =  109 bits (272), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 44/270 (16%), Positives = 91/270 (33%), Gaps = 30/270 (11%)

Query: 89  VNSRISFESYFDQIIR---KSGDFDYRKITTKHI---RSGVESRKHTPSSAIQFLTSMRV 142
             +R +++            +G  ++R +T  H+   R+ +E R    ++  + L ++  
Sbjct: 39  PRTRRAYQIDLQDFCSFVGLAGAEEFRAVTRAHVLAWRARLEKRGLAGATIRRKLAALAS 98

Query: 143 LFKWAVRQE-YVAINPCLSVERPKRKTEGIRP--WTKEDMQQFKSFWSE----GSQPRLA 195
           LF   +        NP   V+RP+ ++   +         +            G + R  
Sbjct: 99  LFDHLLENNAVAGGNPVHGVKRPRIESNEGKTPALADHQAKALLDAPPADSLKGLRDRAV 158

Query: 196 FEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKT-QKTGTIITVELPDGFMKLLAM----- 247
              LLY GLR  +  +     L  +  I  ++   K G +  + L     + +       
Sbjct: 159 LAVLLYHGLRREEGAQLKTSDLQERRGIKHLRVNGKGGKLRWLPLHPVAAERIYAYMEKD 218

Query: 248 --TPIGKETFFINNDKQ----KMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISA 298
                G  + F +   +     ++A          A  AG+       HG+R  +AT + 
Sbjct: 219 LERGAGNGSLFRSLRGRASGTGLSADGIYKIVCHWAMSAGIKVDGLGVHGLRATAATNAL 278

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADR 328
           +  A   ++    G   +     Y +   R
Sbjct: 279 EHDADIAKVQIWLGHANISTTRLYDRRGQR 308


>gi|313123911|ref|YP_004034170.1| tyrosine recombinase xerc [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
 gi|312280474|gb|ADQ61193.1| Tyrosine recombinase xerC [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
          Length = 295

 Score =  109 bits (272), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 41/264 (15%), Positives = 102/264 (38%), Gaps = 24/264 (9%)

Query: 85  GSLAVNSRISFESYF---DQIIRKSGDFD-YRKITTKHIRSGVES--RKHTPSSAIQFLT 138
            S +  + ++++       +  +++G F  + +I+ + +   + +  +K   S+  + L+
Sbjct: 15  RSYSPKTVLAYQKDLAAAKKFWQENGGFPGWDQISRRDLEIYLLATGQKLASSTLSRKLS 74

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG----SQPRL 194
           S++  ++   R+  V  +P ++++  + K +    + ++++ Q     ++G     + R 
Sbjct: 75  SLKSFYRLLTRRGLVKADPTVAIQLRRGKKKLPEFFYQDEVGQVIRSLNDGKPLTVRNRA 134

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLL-----AMT 248
                  +G+R S+     ++ L   N   +   K      V       K L     A  
Sbjct: 135 IVALFYATGMRLSELTDLKIKQLDLENGMILVHGKGNKDRYVFFDQESKKYLEEYLQAAR 194

Query: 249 P------IGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADA 300
           P         E  F+N   + +++   +   +    KAG+      H +R   AT   + 
Sbjct: 195 PSLLKNEPDTEAVFLNKLGRPISSRGIAKAVQQIFQKAGLTAGAHPHELRHSFATAMLNN 254

Query: 301 GATAHELMATYGWKTVDQAETYTK 324
           GA    +    G + +   + YT 
Sbjct: 255 GADLRSVQELLGHEDLSTTQIYTH 278


>gi|134283292|ref|ZP_01769993.1| phage integrase [Burkholderia pseudomallei 305]
 gi|217424779|ref|ZP_03456276.1| phage integrase family protein [Burkholderia pseudomallei 576]
 gi|134245487|gb|EBA45580.1| phage integrase [Burkholderia pseudomallei 305]
 gi|217392235|gb|EEC32260.1| phage integrase family protein [Burkholderia pseudomallei 576]
          Length = 348

 Score =  109 bits (272), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 49/284 (17%), Positives = 105/284 (36%), Gaps = 21/284 (7%)

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119
           Y++    +  T+   +  Y +     +    ++ S       +    G +    ++ + +
Sbjct: 50  YLSRAPSEKLTVSAALKRYMEEVS-ITKKATTQRSERFTSQHLAAFFGKYSMAAVSAELV 108

Query: 120 RSGVESRKHTPSSAIQF---LTSMRVLFKWAVRQEY---VAINPCLSVERPKRKTEGIRP 173
               + R     S       L  +  LF+ A+ QE+   +  NP  ++ +P       R 
Sbjct: 109 AKYRDERLAAGKSNNTVRIELAMLGHLFRVAI-QEWGIGLTFNPVANIRKPSPGAGRDRR 167

Query: 174 WTKEDMQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKT 229
            T E+ Q+  +     S P L       + +G+R S+        +  N    ++K  K 
Sbjct: 168 LTPEEQQRLFAAADAHSNPILGWIVRLAVETGMRSSEITGLHRSQVDLNRRVVTLKDTKN 227

Query: 230 GTIITVELPDGFMKLLA------MTPIGKETFFINNDKQ--KMNATQFSIWFKAKATKAG 281
           G++  V L    +++L       + PI  +  F     +  K     F   + +    AG
Sbjct: 228 GSVRLVPLTRVAVEILRSALDNPIRPIDVDLVFFGEPGRDGKRKPYVFQKLWASIVQTAG 287

Query: 282 V-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           + +   H +R  + +   +AG +  E+ +  G K++   + YT 
Sbjct: 288 LADLHFHDLRHEAVSRLVEAGLSDQEVASISGHKSMQMLKRYTH 331


>gi|212695321|ref|ZP_03303449.1| hypothetical protein BACDOR_04866 [Bacteroides dorei DSM 17855]
 gi|212662231|gb|EEB22805.1| hypothetical protein BACDOR_04866 [Bacteroides dorei DSM 17855]
          Length = 293

 Score =  109 bits (272), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 39/265 (14%), Positives = 94/265 (35%), Gaps = 24/265 (9%)

Query: 76  SEYRKSAHW-GSLAVNSRISFESYF----DQIIRKSGDFDYRKITTKHIRSGVESR---K 127
             +     +  + +  + +S+        + I  K  + D+  +    +R  V +     
Sbjct: 4   DSFLDYLRFERNYSEKTIVSYGIDLIKFEEYIRGKDENVDFTTVDADLVRGWVMNLIEDG 63

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           +T +S  + L+S+R  +++ +++  +  +P L +  PK K        + +M +      
Sbjct: 64  YTSASVNRKLSSLRSFYRFLLKKGVIGEDPMLKIIGPKNKKPLPVFLKEREMDRLLDDVP 123

Query: 188 -----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGF 241
                 G + R+  E    +G+R S+        +  +   IK T K      +   +  
Sbjct: 124 FKEDFTGCRDRMVLEMFYATGMRLSELIGLNDVDVDFSASLIKVTGKRNKQRLIPFGEEL 183

Query: 242 MKLL--------AMTPIGKETFFINNDKQKMNATQFSIWFKA--KATKAGVNKSAHGVRK 291
            + +         + P     FF+  + ++M   +  +  K       +   +S H +R 
Sbjct: 184 RRAMFVYLKIRNEVLPEKAGAFFVLKNGKRMYPGKVYLLVKRNLSKVVSLKKRSPHVLRH 243

Query: 292 FSATISADAGATAHELMATYGWKTV 316
             AT   +  A    +    G  ++
Sbjct: 244 TFATAMLNNEAELGAVKELLGHSSL 268


>gi|293609893|ref|ZP_06692195.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292828345|gb|EFF86708.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 304

 Score =  109 bits (272), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 51/279 (18%), Positives = 97/279 (34%), Gaps = 27/279 (9%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESR---- 126
            L+S + K     + + ++  ++E      +        D R I    +R  +  R    
Sbjct: 6   QLLSMWLKERKIQNQSEHTINAYERDVKSFLEFCEHKQLDLRNIEASDLREYLAQRVEQD 65

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
           + + SS  + LTS+R   KWA + +Y+ INP    +  ++          E + Q     
Sbjct: 66  QLSSSSMQRHLTSIRQFMKWAEQGKYLEINPTDDFKLKRQPRPLPGMIDIETVNQILDQP 125

Query: 187 SEG--------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV--- 235
                       + +   E L  SGLR ++     V+ +  N   ++    G    +   
Sbjct: 126 MPEKPVDQQLWLRDKAMLELLYSSGLRLAELQGLTVKDVDFNRQLVRITGKGNKTRIVPF 185

Query: 236 --ELPDGFMKLLAMTPIGKETF------FINNDKQKMNATQFSIWFKAKATKAGV--NKS 285
             +  +  +  L +  I K  F      FI+     +   Q     K +A +AGV  +  
Sbjct: 186 GKKAKESLLNWLKVYKIWKGHFDQNDSVFISLRGGALTPRQIEKRVKLQAQRAGVNVDLH 245

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            H +R   A+    +      +    G   +   + YT 
Sbjct: 246 PHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTH 284


>gi|302385146|ref|YP_003820968.1| integrase family protein [Clostridium saccharolyticum WM1]
 gi|302195774|gb|ADL03345.1| integrase family protein [Clostridium saccharolyticum WM1]
          Length = 335

 Score =  109 bits (272), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 50/281 (17%), Positives = 97/281 (34%), Gaps = 15/281 (5%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT--- 129
           +L+  Y  +     L+  +  ++      ++  + D + R IT+  I+  ++        
Sbjct: 54  YLLQMYEMNVKKDGLSEKTVKAYMGAMRNMLCVT-DKNIRHITSVDIKYYLDLYAGKGNN 112

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
             +       +  +F W  +   +  NP  +V   K +   I      ++++ +    E 
Sbjct: 113 VRTVNNERRFLSAVFTWFRKHGIINANPVEAVPIKKERKPPIDYLKGVEIEKLRVACKEP 172

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDG----FMK 243
            + R   EFLL +G R  +  +   Q +        I   KT    TV L D       K
Sbjct: 173 -RDRALMEFLLSTGARIGEVPQIRRQDIDWNTGEILIYAHKTSDYRTVYLNDVAMVHLEK 231

Query: 244 LLAMTPIGKETFF--INNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISAD 299
            L       E  F  +      ++     +  K    KAG+ +    H  RK  AT    
Sbjct: 232 YLDSREDNSEALFAGVRAPYNTVHEDGLRLIIKRIGEKAGLKRRVYPHLFRKTMATTLRM 291

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
                 ++    G K       +   A+++ L   ++R +S
Sbjct: 292 KDCAIEDIQQILGHKDPSTTLGFYAAANQVHLRQVHNRYMS 332


>gi|255009008|ref|ZP_05281134.1| putative tyrosine recombinase [Bacteroides fragilis 3_1_12]
 gi|313146748|ref|ZP_07808941.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           3_1_12]
 gi|313135515|gb|EFR52875.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           3_1_12]
          Length = 379

 Score =  109 bits (272), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 44/299 (14%), Positives = 104/299 (34%), Gaps = 18/299 (6%)

Query: 42  TFIPAYMSALTGSTPKREYINSPRKKPTTLK-WLISEYRKSAHWGSLAVNSRISFESYFD 100
            F   Y++       K     +  +K  T++  L + + +       + ++   + +Y  
Sbjct: 68  DFFDRYVNLAFIDYSKVTDTTNKPEKEKTIRPELPAGFLEKLKQMRYSDHTIRVYTTYIG 127

Query: 101 QIIRKSGDFDYRKITTKHIRSG----VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAIN 156
              +     + ++I+   I +     ++ +  +     Q + +++  ++  +  E     
Sbjct: 128 DFQQYFAGSNLKRISPDEINAYLLHLIDKKNISSCQQNQRINAIKFYYEKVLGNER---- 183

Query: 157 PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216
            C  V R KR+       +KE+++ F +   E  +    +  L  +GLR S+        
Sbjct: 184 HCYKVNRAKREKTLPDVLSKEEVKDFLTVAKEDLRFYCMYSLLYSAGLRISELLNLKPDD 243

Query: 217 LQ--NNIFSIKTQKTGT----IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS 270
           +    ++  ++  K       +++    +   +        K   F      + + +  S
Sbjct: 244 INISRSLIHVRQGKGKKDRYTLLSKPFINKLEEYRIAYQPEKW-LFEREAGVQFSESIVS 302

Query: 271 IWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
              K  A +AG+ K    H  R   AT   + G     +    G + +   E Y   AD
Sbjct: 303 KKLKEIAHEAGITKRVYPHLFRHSFATHLIEQGTDLKIIKELLGHENIKTTEMYVHIAD 361


>gi|114762955|ref|ZP_01442385.1| Phage integrase [Pelagibaca bermudensis HTCC2601]
 gi|114544279|gb|EAU47287.1| Phage integrase [Roseovarius sp. HTCC2601]
          Length = 316

 Score =  109 bits (272), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 42/312 (13%), Positives = 103/312 (33%), Gaps = 36/312 (11%)

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSG 122
           P+    T+      + K+     L  ++  ++ S+    I  K GD     ++   +R  
Sbjct: 2   PQTMTKTVTDACESWLKTCERNQLERSTLKAYRSHARVHIEPKIGDLLLGDLSRGQVRDF 61

Query: 123 VESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW---TK 176
           +        + +   + + S+R +   AV +E++  +    V+  +R+          TK
Sbjct: 62  MHELLDDGISQALVRKVMVSLRAVLSEAVEREWIEHDVATDVKMRRRRRSESDERVIPTK 121

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ------- 227
           ++++            R  F   +++G+R S+       ++     +  ++ +       
Sbjct: 122 DEIRLIVENAPA--SHRAMFIAAIFTGMRISELRGLTWDNVDLDRGLVHVRQRADEHCVL 179

Query: 228 -KTGTII---TVELPDGFMKLLAMTPIG-----KETFFINNDKQKMNATQFSIW-FK--- 274
            K  +      + +       LA          +   F N   +  N +      FK   
Sbjct: 180 GKPKSRAGHRDIPMTPLVRDTLAQWQRTVPVTVQNLVFPNGAGKIQNYSNIYNRVFKPML 239

Query: 275 ---AKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRI 329
                   AG  K   H +R  +A++  + G    ++    G  ++    + Y    +  
Sbjct: 240 VANGIVDAAGEPKFGLHALRHAAASLFIEQGWNPKKIQTLLGHASITMTMDVYGHLFENA 299

Query: 330 RLGIKNSRRISS 341
              +    ++ S
Sbjct: 300 EEDVSMFAKLES 311


>gi|255068446|ref|ZP_05320301.1| tyrosine recombinase XerC [Neisseria sicca ATCC 29256]
 gi|255047288|gb|EET42752.1| tyrosine recombinase XerC [Neisseria sicca ATCC 29256]
          Length = 303

 Score =  109 bits (272), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 36/270 (13%), Positives = 90/270 (33%), Gaps = 21/270 (7%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSGVESRKH--- 128
           +  Y K       + ++  ++     +++R   K      + +  +   + ++       
Sbjct: 10  LDGYLKMLGQQGKSAHTLSAYGRDLTELVRLLTKGSSETAQDLKRRDFVAALKRLSQQGL 69

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           +  +  + L++ R    W V+   +  +P  +++  +      +   +E++         
Sbjct: 70  SERTLARKLSAWRQYCGWLVQSGMMDNDPTFNLKASRLPERLPKALPQEELNHMLDSAPA 129

Query: 189 ----GSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELP---- 238
                 +    FE +  SGLR S+     +  +       S+ T K      + L     
Sbjct: 130 DDSLAVRDHALFELMYGSGLRLSEIHGLDLGDVLLDEGWVSV-TGKGRKERQIPLSGKSV 188

Query: 239 DGFMKLL--AMTPIGKETFFINNDKQKMNATQFSIWFKAKATK--AGVNKSAHGVRKFSA 294
           +     L   +   G+   F   +  ++   Q     +A A +  +G + S H +R   A
Sbjct: 189 EALRAYLSERVAADGETALFTGKNGTRLGQRQIQKRLQAWAVQQGSGQHISPHMMRHSYA 248

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324
           +    +      +    G   +   + YTK
Sbjct: 249 SHLLQSSRDIRAVQELLGHSNLSTTQIYTK 278


>gi|325983789|ref|YP_004296190.1| integrase family protein [Nitrosomonas sp. AL212]
 gi|325533308|gb|ADZ28028.1| integrase family protein [Nitrosomonas sp. AL212]
          Length = 316

 Score =  109 bits (272), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 54/269 (20%), Positives = 98/269 (36%), Gaps = 30/269 (11%)

Query: 90  NSRISFESYFDQIIRKSG---DFDYRKITTKHIRSGVES---RKHTPSSAIQFLTSMRVL 143
            +R ++E+     +  +G     ++R +T  HI +  +    R  +  S    L+++  L
Sbjct: 37  ATRRAYENALKDFMNFTGIQNPEEFRVVTRAHIIAWRDDLVNRSLSSMSIRHRLSALSSL 96

Query: 144 FKWAVRQEYVAINPCLSVERPKRKT-EGIRPWTKEDMQQFKSFWSEGS-----QPRLAFE 197
           F++   +  V  NP   V+RP  ++ EG  P   +   +      +GS     + R    
Sbjct: 97  FEYLCERNTVTHNPVKGVKRPAVESYEGKTPAIGDHQARELLEVPDGSSLKGKRDRAILA 156

Query: 198 FLLYSGLRCSDSCRAGVQHL---QNNIFSIK-TQKTGTIITVELPDGFMKLLA--MTPIG 251
            LLY  LR  + CR  V+     +  +  IK + K G    V L      L+   +   G
Sbjct: 157 TLLYHALRRDELCRLKVKDFKQERRGVPHIKISGKGGKTRYVPLHPAASGLIHDYLDAAG 216

Query: 252 KET-----FF-------INNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISAD 299
            +       F       I   ++ +         +  + K G    AH +R  +AT + D
Sbjct: 217 HDHEETGALFRSVSNNRIKESQKPITPDGVYKLVQKYSEKLGFKIGAHSLRATAATNALD 276

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADR 328
             A   ++    G   +     Y     R
Sbjct: 277 HQADIAKVQEWLGHANIATTRIYDHRRTR 305


>gi|225863775|ref|YP_002749153.1| DNA integration/recombination/invertion protein [Bacillus cereus
           03BB102]
 gi|225788569|gb|ACO28786.1| site-specific recombinase, phage integrase family [Bacillus cereus
           03BB102]
          Length = 368

 Score =  109 bits (272), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 54/293 (18%), Positives = 103/293 (35%), Gaps = 36/293 (12%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE 124
               TLK  + ++ +     S+  +S   ++S  +  II   G     K+   HI+   +
Sbjct: 60  PSKITLKDYLIQWLEIKK-MSVEKSSLSRYQSNINKHIIPNIGMISLHKLNVMHIQKCYQ 118

Query: 125 SRKHTPSSAIQFLTSMRVL---FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
           S  ++  +    L   R+L      AV+Q  +  NP      PK++   I+ WT+E+++Q
Sbjct: 119 SALNSGIANNTILFQHRILTAALNLAVKQNIIPRNPATLAVIPKKEKSSIQTWTEEEVKQ 178

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--------------NNIFSIKTQ 227
           F    S+ S+  + +   + +G+R  +      Q +               +N      +
Sbjct: 179 FL-LHSQESRYHIGYLLAITTGMRLGEVLGLRWQDVDFNNHTVTINQTLGHDNKIKTSAK 237

Query: 228 KTGTIITVELP----DGFMKL--------LAMTPI--GKETFFINNDKQKMNATQFSIWF 273
              +  T+ +P    +   K         L + P     +    N   +    T F+  F
Sbjct: 238 NNSSKRTIPIPLEVIEELKKCKLQVNKDKLRIGPAYHDLDLIICNKLGEVTTRTTFTRHF 297

Query: 274 KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTK 324
                 AG+ K   H  R   AT+    G     +    G   +      Y+ 
Sbjct: 298 DKVIKNAGIKKIKFHDTRHTHATLLLKQGVHPKVVSERLGHSDISLTLRVYSH 350


>gi|145637619|ref|ZP_01793275.1| tyrosine recombinase [Haemophilus influenzae PittHH]
 gi|145269216|gb|EDK09163.1| tyrosine recombinase [Haemophilus influenzae PittHH]
          Length = 325

 Score =  109 bits (272), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 39/260 (15%), Positives = 88/260 (33%), Gaps = 21/260 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRKHTPSSAIQFLT 138
             ++ ++  +++   D  I+     D    T       + I +  + +     S    L+
Sbjct: 16  RQMSPHTLTNYQHQLDATIKILAQQDIHSWTQVTPSVVRFILAESKKQGLKEKSLALRLS 75

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS---FWSEGSQPRLA 195
           ++R    + V+Q  + +NP   +  PK+     +    E +QQ  +         + R  
Sbjct: 76  ALRRFLSFLVQQGELKVNPTTGISAPKQGKHLPKNMDGEQVQQLLANDSKEPIDIRDRAI 135

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLLA 246
            E +  SGLR S+     +  +   +  ++    G    V          + +       
Sbjct: 136 LELMYSSGLRLSELQGLDLNSINTRVREVRVIGKGNKERVVPFGRYASHAIQEWLKVRAL 195

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATA 304
             P   E  F++    +++        +    + G+N   + H +R   AT   +A +  
Sbjct: 196 FNP-KDEALFVSQLGNRISHRAIQKRLETWGIRQGLNSHLNPHKLRHSFATHMLEASSDL 254

Query: 305 HELMATYGWKTVDQAETYTK 324
             +    G   +   + YT 
Sbjct: 255 RAVQELLGHSNLSTTQIYTH 274


>gi|45657471|ref|YP_001557.1| putative integrase/recombinase protein [Leptospira interrogans
           serovar Copenhageni str. Fiocruz L1-130]
 gi|45600710|gb|AAS70194.1| putative integrase/recombinase protein [Leptospira interrogans
           serovar Copenhageni str. Fiocruz L1-130]
          Length = 332

 Score =  109 bits (272), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 50/260 (19%), Positives = 92/260 (35%), Gaps = 22/260 (8%)

Query: 85  GSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVESRKHT----PSSAIQFLT 138
            + + N+  ++           +    D  +I    IRS              S  + L+
Sbjct: 52  KNYSQNTINAYSIDLKFFFEFCEKEQLDIFQIEPVDIRSYFAYLAKKHEIDRRSQSRKLS 111

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS------QP 192
           S+R  +K  +R++ V  NP   +  PK + E  + +   + ++   F SE +      + 
Sbjct: 112 SLRTFYKVLLREDLVKSNPATQLSFPKVRKEVPKNFRINETEEILEFESENASEVSEIRD 171

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT--------VELPDGFMKL 244
           R   E L  SGLR  +   A +  L  ++  +K    G            V     +++ 
Sbjct: 172 RAMIEVLYSSGLRVFELVNAKLNSLSKDLTVLKVLGKGRKERFVYFGKEAVSSLQKYLEY 231

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGA 302
             ++    E  F+N   +K+           +  K G  K+   H  R   AT   DAGA
Sbjct: 232 RNVSFPDAEEIFLNQRGKKLTTRGVRYILNERRKKMGWEKTITPHKFRHTFATDLLDAGA 291

Query: 303 TAHELMATYGWKTVDQAETY 322
               +    G  ++   + Y
Sbjct: 292 EIRAVQELLGHSSLSTTQIY 311


>gi|307289187|ref|ZP_07569143.1| tyrosine recombinase XerC [Enterococcus faecalis TX0109]
 gi|306499896|gb|EFM69257.1| tyrosine recombinase XerC [Enterococcus faecalis TX0109]
 gi|315164096|gb|EFU08113.1| tyrosine recombinase XerC [Enterococcus faecalis TX1302]
          Length = 299

 Score =  109 bits (272), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 39/267 (14%), Positives = 95/267 (35%), Gaps = 29/267 (10%)

Query: 85  GSLAVNSRISFE---SYFDQIIRKSGDFDY---RKITTKHIRSGVESRKHTPSSAIQFLT 138
              +  ++ +++    +F   ++ SG  +Y     +  +   S +  ++++ +S  + + 
Sbjct: 18  RGYSEKTKKAYQEDIQHFFSFLKTSGSDNYLTVEHLDVRAYLSELYDQEYSRNSISRKIA 77

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRL 194
           S+R  +++ ++ E +  NP   V   K++    R + +++M               + + 
Sbjct: 78  SLRSFYQFLLKNEAIQENPFSYVHMKKKQLRLPRFFYEKEMDALFESAQGEQPLDLRNQA 137

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-ITVE------------LPDGF 241
             E L  +G+R S+     V  +      +     G     V             L +G 
Sbjct: 138 LLEVLYGTGIRVSECANLTVDAVDFQASVLLVHGKGNKDRYVPFGSFAQDALKDYLENGR 197

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQ----FSIWFKAKATKAGVNKSAHGVRKFSATIS 297
             L+          F+N+  +++  T      +   K  +  A ++   H +R   AT  
Sbjct: 198 ALLMTKYQKKHPYVFVNHHGEQITPTGIEYVLNQLIKKSSLNAEIH--PHMLRHTFATHL 255

Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324
            + GA    +    G   +   + Y  
Sbjct: 256 LNNGADMRTVQELLGHANLSTTQIYAH 282


>gi|289579058|ref|YP_003477685.1| integrase [Thermoanaerobacter italicus Ab9]
 gi|289528771|gb|ADD03123.1| integrase family protein [Thermoanaerobacter italicus Ab9]
          Length = 291

 Score =  109 bits (272), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 49/285 (17%), Positives = 102/285 (35%), Gaps = 30/285 (10%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK----ITTKHIRSGVESR-- 126
             + +YR        + N+  S+ S  ++ +R  GD   ++    I  +  R        
Sbjct: 2   DWVEKYRDVLQQSGKSTNTVESYISDINEFLRWFGDTYGKEFDGRILEQDAREYRNYLLN 61

Query: 127 --KHTPSSAIQFLTSMRVLFKWAVRQEY-VAINPCLSVERPKRKTEGIRPWTKEDMQQF- 182
             K  PSS  + + +++   ++ ++       N C  +         IR  ++ ++ +  
Sbjct: 62  IIKLKPSSINRKMAALKNFNQFLIQTGTGTEANIC-GISVADIHDREIRTISRNELNRLK 120

Query: 183 KSFWSEGSQPRLAF-EFLLYSGLRCSDSCRAGVQHLQNNI---------FSIKTQKTGTI 232
           ++ ++ G++  +A  E L+ +G+R S+     +Q +               I+  K G  
Sbjct: 121 RAVYASGNKRDIALIELLIGTGVRVSELVSLTIQDIHLTERNGSQNYSYIVIRNGKGGKY 180

Query: 233 ITVELP----DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAH 287
             + L         + LA+ P   +  FI      +         K     +G+ + SAH
Sbjct: 181 REIPLNSQVKKALEEYLAIRPSSSDRIFIGQRG-PLRRESVDKIIKKYCRISGIEEISAH 239

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK--GADRI 329
            +R    T     G     +    G   V    + Y +   AD+I
Sbjct: 240 VLRHTFCTRLVQEGTPIPVVSKLAGHSNVQTTMDFYVRVSRADKI 284


>gi|28572470|ref|NP_789250.1| DNA recombinase [Tropheryma whipplei TW08/27]
 gi|28410602|emb|CAD66988.1| putative DNA recombinase [Tropheryma whipplei TW08/27]
          Length = 306

 Score =  109 bits (272), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 40/263 (15%), Positives = 95/263 (36%), Gaps = 23/263 (8%)

Query: 85  GSLAVNSRISFESYF----DQIIRKSGDFDYRKITT---KHIRSGVESRKHT-PSSAIQF 136
              + ++  ++        + II      + + +     + +RS + S+ H    S  + 
Sbjct: 27  RGYSSHTCRAYYRDLMCFGEYIITHDSRENVKSLRDVSIQDLRSWLYSQSHKSARSIRRA 86

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG-----SQ 191
           ++S++  F+WA  ++  A N   ++  PK  ++     +++ + Q    +S        +
Sbjct: 87  VSSLKSFFRWAYDRKITAQNTAAALRAPKSTSQLPSVLSEKRIAQILGNFSHTVPVIQLR 146

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM--- 247
               FE L  S +R S+     +  + +++ +++   K G    V         L +   
Sbjct: 147 NTAIFELLYASAIRVSELVSLDLDSIDHDLCTVRVDGKNGKQRVVLFGKPASHALDLYLN 206

Query: 248 ------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAG 301
                 +    +  F+ +  +++N                  +  H +R  +AT   D G
Sbjct: 207 MRHTLLSDRSSKALFLGSRGRRINPRVVYRLVSELLEMPKGPRGPHVLRHSAATHMLDNG 266

Query: 302 ATAHELMATYGWKTVDQAETYTK 324
           A    L    G  ++   + YT 
Sbjct: 267 ADLRSLQEILGHSSLSTTQIYTH 289


>gi|120553434|ref|YP_957785.1| tyrosine recombinase XerC [Marinobacter aquaeolei VT8]
 gi|120323283|gb|ABM17598.1| tyrosine recombinase XerC [Marinobacter aquaeolei VT8]
          Length = 324

 Score =  109 bits (272), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 39/257 (15%), Positives = 87/257 (33%), Gaps = 20/257 (7%)

Query: 88  AVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFLTSMR 141
           +  +   ++    ++   +  +G  D+ +++   +R  V        +  S  + L+S+R
Sbjct: 32  SPRTCEHYQRDLQRLVAWLADNGLNDWSELSAHDVRRYVARLSRDGLSGRSIARHLSSIR 91

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS---QPRLAFEF 198
             +++ +R+     NP L +  PK      R    + + Q      E     +    FE 
Sbjct: 92  RFYQYLLREGLAIDNPALDIRAPKSGRRLPRVADVDQIGQLLDATPEDPLEIRDLAMFEL 151

Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLLAMTP 249
           +  SGLR ++   A +  L      I+    G    V          L        A+  
Sbjct: 152 MYSSGLRLAELAGADLSALDLKGPEIRVLGKGNKERVLPVGRKAVAALQQWLSCRRALVT 211

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHEL 307
            G++  F++    +++               G ++    H +R   A+   ++      +
Sbjct: 212 EGEKALFVSQRGTRLSRRSIQSRLSRWGILHGADQRLHPHLLRHSFASHMLESSGDLRAV 271

Query: 308 MATYGWKTVDQAETYTK 324
               G   +   + YT 
Sbjct: 272 QELLGHADIATTQVYTH 288


>gi|299141119|ref|ZP_07034256.1| tyrosine recombinase XerD [Prevotella oris C735]
 gi|298577079|gb|EFI48948.1| tyrosine recombinase XerD [Prevotella oris C735]
          Length = 293

 Score =  109 bits (272), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 40/277 (14%), Positives = 101/277 (36%), Gaps = 28/277 (10%)

Query: 74  LISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDF----DYRKITTKHIRSGVESR-- 126
           +I ++     +  + +  +  ++        +   D      +  +    +R+ +E    
Sbjct: 2   MIDKFLDYLRFECNRSELTVKNYGDDLRSFEKFFRDLKNPVSWESVDLDVVRNWMERMMD 61

Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF--K 183
             +  +S  + L+++R  +++A+ ++ V  +P   +  PK+     +   +++M +   +
Sbjct: 62  EGNNAASINRRLSALRSFYRFALSRKLVDKDPVHGITGPKKGKPLPQFLKEKEMDRLLER 121

Query: 184 SFWS---EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPD 239
            +W+   E  + R        +G+R S+      + +    + +K T K      +   +
Sbjct: 122 EYWTRSFEDVRDRAIIMTFYETGIRLSELTGLDDKMVDFAEYQLKVTGKRNKQRIIPFGE 181

Query: 240 GFMKLL--------AMTPIGKETFFINNDKQKMNATQFSIWFK----AKATKAGVNKSAH 287
                L               E  F+ ++ Q+M+A+      K       T     +S H
Sbjct: 182 ELCTTLRDYMESRDREVGRLSEALFVTDEGQRMSASLVRERVKRSLSKVCTLK--KRSPH 239

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            +R   AT   +  A    +    G +++   E YT 
Sbjct: 240 VLRHTFATAMLNHKAGIESVKKLLGHESLSTTEIYTH 276


>gi|190570559|ref|YP_001974917.1| site-specific recombinase, phage integrase family [Wolbachia
           endosymbiont of Culex quinquefasciatus Pel]
 gi|190356831|emb|CAQ54200.1| site-specific recombinase, phage integrase family [Wolbachia
           endosymbiont of Culex quinquefasciatus Pel]
          Length = 306

 Score =  109 bits (272), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 43/283 (15%), Positives = 90/283 (31%), Gaps = 31/283 (10%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQII--------RKSGDFDYRKITTKHIRS 121
           L  +I ++     +  S + N+  S+      +I         +       K++   +RS
Sbjct: 3   LGSIIEKWYDWLKYNRSYSPNTLESYMRDLKDLISFLNTHIGEEVNVGSLEKLSIPELRS 62

Query: 122 G---VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL-SVERPKRKTEGIRPWTKE 177
                 +R     S  + L+ +R  FK+ ++  Y   N  + S+ RP ++    +  +  
Sbjct: 63  WFTSRYARGVNARSNTRALSVIRNFFKY-IKNNYEINNEAVFSLSRPIQRRTLPKALSIS 121

Query: 178 DMQQFKSFWSEGS--------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229
           +++                  +       L  +GLR +++    V  + N    I T K 
Sbjct: 122 NIETLLKEMKLPDLGEPWVVKREIAIVVLLYGTGLRITEALNLKVSDISNESL-IVTGKG 180

Query: 230 GTIITVELPDGFMKLLAMTPIGKETF------FINNDKQKMNATQFSIWFKAKATKAGVN 283
                V +     K +         F      F+    +K+  T  +   +       + 
Sbjct: 181 DKQRQVFILPVVKKCIQKYIKACPHFDEAGHLFVGVRGKKLGRTYVANRLQKIRRFLNLP 240

Query: 284 --KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              S H  R   AT           +    G  +++  + YT 
Sbjct: 241 EILSPHAFRHSFATHLLQEDIDIRSIQQLLGHSSLETTQVYTH 283


>gi|307944724|ref|ZP_07660062.1| integrase family protein [Roseibium sp. TrichSKD4]
 gi|307771938|gb|EFO31161.1| integrase family protein [Roseibium sp. TrichSKD4]
          Length = 210

 Score =  109 bits (272), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 67/197 (34%), Gaps = 10/197 (5%)

Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217
               ER  +     + W  E +  F +  S   + +LA    L++G R  D       + 
Sbjct: 1   MDGFERAYQSDRSDKIWLPEHVDAFMAVASP--EMKLAMVLALHTGQRRGDLLLLNWNNY 58

Query: 218 QNNIFSIKTQKT------GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI 271
                S+   KT      G ++T++      + L   P            +      F++
Sbjct: 59  DGERISLYQGKTRRGKPKGRLVTIKCTKALKETLDGLPKRATLILTTKTGRAFQKRYFAL 118

Query: 272 WFKAKATKAG-VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR-I 329
            ++    +AG  +   H +R  + T+   AG     +++  G       +   K   R  
Sbjct: 119 QWEKTCKEAGNEDLHFHDIRGTTVTMLFQAGCNLGGIVSITGHSLRRAQDILDKYLARTS 178

Query: 330 RLGIKNSRRISSVVDSD 346
            +      +  +V++++
Sbjct: 179 TMADNAIAKFENVLETN 195


>gi|315186399|gb|EFU20159.1| integrase family protein [Spirochaeta thermophila DSM 6578]
          Length = 299

 Score =  109 bits (272), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 49/283 (17%), Positives = 100/283 (35%), Gaps = 25/283 (8%)

Query: 74  LISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGV-ESRKHT 129
           L+  YR         +  +  ++    ++          +   ++ +     + + R   
Sbjct: 8   LLRRYRTHLVAELGRSRLTEETYLPLCERFCAWLECRGLEVETVSRRTCEEFIVDERGEG 67

Query: 130 P--SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ----QFK 183
               +  + ++++R  F++ V +     NP   ++ P+      R   +E+++       
Sbjct: 68  KETRTIAKEMSALRSFFRFLVLEGVRPDNPLEEMDAPRISRTLPRVLEEEEVEILLEAVD 127

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-------- 235
           +   EG + R   E L   GLR S++C   +Q +  +   +K +  G    +        
Sbjct: 128 TTPPEGMRDRCLLEVLYSCGLRVSEACGLDLQDIFLSEGFVKVRGKGEKERLVPFGKEAG 187

Query: 236 -----ELPDGFMKLLAMTPIGKE-TFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGV 289
                 L +    L A  P  +E   F+N   ++++     I  K     +GV+   H  
Sbjct: 188 HWMRRYLSEARPVLAARRPGSREQAVFLNRWGRRLSRKGAWIRLKRLVAASGVDAKLHTF 247

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           R   AT     GA   E+    G   +   + YT   D  RL 
Sbjct: 248 RHTCATHLLHGGANLREVQEFLGHADISTTQIYTH-VDARRLA 289


>gi|330501235|ref|YP_004378104.1| site-specific tyrosine recombinase XerC [Pseudomonas mendocina
           NK-01]
 gi|328915521|gb|AEB56352.1| site-specific tyrosine recombinase XerC [Pseudomonas mendocina
           NK-01]
          Length = 298

 Score =  109 bits (272), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 37/270 (13%), Positives = 95/270 (35%), Gaps = 20/270 (7%)

Query: 75  ISEYRKS-AHWGSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIR---SGVESRK 127
           +  Y +       ++V++   +     ++       G  D+ ++ T+++R   + +  + 
Sbjct: 5   LDAYLEHLRRERQVSVHTLDGYRRDLGKVLAFCEAEGLSDWAELDTRNLRRLVARLHQQG 64

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            +  S  + L++ R L+++ +R+     +P   +  PKR+    R    +   Q      
Sbjct: 65  LSSRSLARLLSATRGLYQYLLREGLCRHDPATGLSPPKRERRLPRTLDADRSAQLLDGAV 124

Query: 188 E----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-VEL----- 237
           E      + +   E    SGLR S+     +  L      I+ +  G  +  + +     
Sbjct: 125 EDDFIARRDQAMLELFYSSGLRLSELVGLDLDGLDLPAGLIRVRGKGNKVRELPVGSLAR 184

Query: 238 --PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK-ATKAGVNKSAHGVRKFSA 294
              + ++ L  +        FI+   +++      +        + G +   H +R   A
Sbjct: 185 QALEQWLPLRKLANPSDGAVFISQQGRRLGPRAVQLRVHQAGVRELGQHLHPHMLRHSFA 244

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324
           +   ++      +    G   +   + YT 
Sbjct: 245 SHMLESSQDLRAVQELLGHADIATTQIYTH 274


>gi|304312423|ref|YP_003812021.1| Phage integrase [gamma proteobacterium HdN1]
 gi|301798156|emb|CBL46378.1| Phage integrase [gamma proteobacterium HdN1]
          Length = 434

 Score =  109 bits (272), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 55/353 (15%), Positives = 114/353 (32%), Gaps = 42/353 (11%)

Query: 10  FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
           +      +HG+     R   G+   L            ++ +  +    +      +   
Sbjct: 54  YGVNYTDKHGRKT---RFTIGKHGTLTTDEARKAAKKRLAEIVVNDANPQQQRQKDRNEL 110

Query: 70  TLKWLISEYRKSAHWGSLAVNSRI-SFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128
           T+  L +EY  S  +   A  ++      + + I+   G     ++  + +R        
Sbjct: 111 TVSELFAEYFLSEQFREKAPLTQRGDQGRFGNHILPLIGRLRLSEVNAEKVRKMRREIAE 170

Query: 129 TPSS----------AIQFLTSMRVLFKWAVRQ--EYVAINPCLSVERPKRKTEGIRPWTK 176
             ++          A   +  +  ++ WA +    +   NPC  V       +G R    
Sbjct: 171 GKTATSTVKGGEGTARMAVRLLSAVYGWACKNVEGFAIDNPCRGV---NLGRDGERTAIL 227

Query: 177 EDMQQFKSFWSEGSQ----------PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-- 224
           +D ++++  +    +                 L  +G R S+ C    +++     +I  
Sbjct: 228 KDAEEYRRLFEALDRLTATRQVTENAADCIRLLALTGARRSEVCAIRWRNIDAERGAIVL 287

Query: 225 ------KTQKTGTIITVELPDGFMKLLAMTPIG--KETFFINNDKQKMNATQFSIWFKAK 276
                   +KTG   T+ LP   + ++A    G   +  F              IW + +
Sbjct: 288 APTEHKTGRKTGAKKTILLPAPALAIVAKRERGQPDDYVFRGEQGSGHTWLNSKIWVRIR 347

Query: 277 ATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
             +A +      H +R   AT+ A  GA A +LM   G   +     Y   A+
Sbjct: 348 -REANLPDGITNHALRHSFATMLAVQGAEAAQLMKALGHAQISTTVRYINTAE 399


>gi|298694544|gb|ADI97766.1| Site-specific tyrosine recombinase [Staphylococcus aureus subsp.
           aureus ED133]
          Length = 298

 Score =  109 bits (272), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 37/266 (13%), Positives = 93/266 (34%), Gaps = 22/266 (8%)

Query: 85  GSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVE---SRKHTPSSAIQFLTS 139
            + + ++  S++    Q  +  +           +  R+ +    S     +S  + +++
Sbjct: 16  RNFSEHTLKSYQDDLIQFNQFLEQEHLQLNTFEYRDARNYLSYLYSNHLKRTSVSRKIST 75

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLA 195
           +R  +++ +  +   INP + +  PK++    + + +E+M+       E +    + R+ 
Sbjct: 76  LRTFYEYWMTLDENIINPFVQLVHPKKEKYLPQFFYEEEMEALFKTVEEDTSKSLRDRVV 135

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVE--------LPDGFMKLL 245
            E L  +G+R S+      Q +    N  ++   K      V         + +      
Sbjct: 136 LELLYATGIRVSELVNIKKQDIDFYANGVTV-LGKGSKERFVPFGAYCRQSIENYLEHFK 194

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATK-AGV-NKSAHGVRKFSATISADAGAT 303
            +     +   +N   + +              + AGV     H +R   AT   + GA 
Sbjct: 195 PIQSCNHDFLIVNMKGEAITERGVRYVLNDIVKRTAGVSEIHPHKLRHTFATHLLNQGAD 254

Query: 304 AHELMATYGWKTVDQAETYTKGADRI 329
              + +  G   +     YT  +++ 
Sbjct: 255 LRTVQSLLGHVNLSTTGKYTHVSNQQ 280


>gi|148260468|ref|YP_001234595.1| phage integrase family protein [Acidiphilium cryptum JF-5]
 gi|146402149|gb|ABQ30676.1| phage integrase family protein [Acidiphilium cryptum JF-5]
          Length = 304

 Score =  109 bits (272), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 45/271 (16%), Positives = 85/271 (31%), Gaps = 21/271 (7%)

Query: 75  ISEYRKSA-HWGSLAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVESRKH 128
           I  + +S       A N+ +++++           R  G  +    +      G+ +   
Sbjct: 7   IEAFLESMVAERGAARNTILAYQADLADFAAFCASRGHGPAEADAASVADYLGGLATAGL 66

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           +  +  + L+S+R   ++ +R    A +P      PK      +  ++ ++    +  + 
Sbjct: 67  SARTQARRLSSLRQFQRFLLRDGQRADDPTALTSSPKLARTLPKTISEAEVDALLTAAAA 126

Query: 189 -----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGFM 242
                G       E L  +G+R S+        L  +  ++    K G    V L     
Sbjct: 127 MPGQAGRVAEAGLEILYATGMRISELLVLPANALSTDASALLIKGKGGRERIVPLSAAAR 186

Query: 243 KLLAMT-----PIGKETFFINND-KQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFS 293
              A              F        M    F+   K  A  AG++    S H +R   
Sbjct: 187 DAAARLREMNRKRPSRHLFPGRRMGFPMTRQAFARQLKRVAVMAGIHPARLSPHSLRHAF 246

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324
           AT     GA    L    G   +   + YT 
Sbjct: 247 ATHLLARGADLRSLQTLLGHADISTTQIYTH 277


>gi|283782965|ref|YP_003373719.1| tyrosine recombinase XerD [Gardnerella vaginalis 409-05]
 gi|283441042|gb|ADB13508.1| tyrosine recombinase XerD [Gardnerella vaginalis 409-05]
          Length = 319

 Score =  108 bits (271), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 37/266 (13%), Positives = 79/266 (29%), Gaps = 22/266 (8%)

Query: 81  SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSM 140
           S    S   +    +  +     +        ++  +     +        +  + L S+
Sbjct: 36  SKKTVSAYASDLQDYTCWLYNERKIKDITTISQLDIESYIRTLNELGLGTRTVARRLASI 95

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-------FKSFWSEGSQPR 193
               ++ +    +  +    V+ PK+        + E++ +       F S  +   +  
Sbjct: 96  HEWHRFMLAHGDIQADVSAQVKAPKQADYLPDVLSIEEVNRVIEAAGNFGSSDAISIRDT 155

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVEL------------PDG 240
              EFL  +G R S++     + +  N   +K T K      V +               
Sbjct: 156 ALLEFLYATGARISEAVGVKFEDIDLNESVVKLTGKGSKQRLVPIGGCAVRALRNYMEKS 215

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISA 298
             +L         T F+N     ++             +A ++K    H +R   AT   
Sbjct: 216 RPELALKGKRELHTIFLNKRGSALSRQSAWEIVTQAGERAKLDKPLHPHTLRHSLATHLI 275

Query: 299 DAGATAHELMATYGWKTVDQAETYTK 324
             GA    +    G  +V   + YT 
Sbjct: 276 AGGADVRTVQELLGHASVTTTQIYTH 301


>gi|212712108|ref|ZP_03320236.1| hypothetical protein PROVALCAL_03188 [Providencia alcalifaciens DSM
           30120]
 gi|212685249|gb|EEB44777.1| hypothetical protein PROVALCAL_03188 [Providencia alcalifaciens DSM
           30120]
          Length = 319

 Score =  108 bits (271), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 43/271 (15%), Positives = 90/271 (33%), Gaps = 21/271 (7%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKH 128
           L   I  +       +L   +   ++    +I     +    +I TK I   +       
Sbjct: 38  LHEWIDRFNNIIIHRNLKKRTLDDYQGRLKRIKNSFNNIPLHEIKTKDIADYINKIVSNG 97

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
             ++A    + ++ +F  A+       NP ++   P+ K    R  ++ D          
Sbjct: 98  NITTARLMRSILKDMFNEAMSDGVTDSNPVIATRVPRNKIARSR-LSESDYLAIYQSAVI 156

Query: 189 GSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL-------PD 239
             QP   ++ +  + +G R  D  +     +++    I+ +KTGT I + L         
Sbjct: 157 NCQPWVSMSMDLAILTGQRSGDIRKLKWDDVRDGFLWIEQEKTGTKIAIPLNISNSIANK 216

Query: 240 GFMKLLAMTP---IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-----SAHGVRK 291
               +L        GKE+  ++     +        F     K+G++      + H +R 
Sbjct: 217 TLQLVLDRCKHELNGKESVLVSQRGDMLADKTIGKSFSLARDKSGLSWEGSPPTFHEIR- 275

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETY 322
             A+       +        G K++D    Y
Sbjct: 276 SLASRVYGIEKSDEFANQLLGHKSMDMTRMY 306


>gi|218533191|ref|YP_002424007.1| integrase family protein [Methylobacterium chloromethanicum CM4]
 gi|218533206|ref|YP_002424022.1| integrase family protein [Methylobacterium chloromethanicum CM4]
 gi|218525494|gb|ACK86079.1| integrase family protein [Methylobacterium chloromethanicum CM4]
 gi|218525509|gb|ACK86094.1| integrase family protein [Methylobacterium chloromethanicum CM4]
          Length = 354

 Score =  108 bits (271), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 52/320 (16%), Positives = 101/320 (31%), Gaps = 20/320 (6%)

Query: 17  RHGKIIY-YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75
           R G + +  FR+      +       T   AY+  L      R   + PR +    +  +
Sbjct: 6   RRGDVWWVRFRRNGTHVRKSAKTTRKTEAQAYLERLLAEQAGRARGDVPRHR---FEEAV 62

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP---SS 132
             Y +      +   +  S+ S    +          +IT + I   V +RK T    ++
Sbjct: 63  ERYFQE---TRVRPKTLSSYRSNSRTLAPSFNALHLDEITRRAIAEFVTARKRTGVTDTT 119

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINP--CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
             + L  + V+     R  ++  NP         +      R  T+ +  +  +  S   
Sbjct: 120 IRRDLAFLSVICSACGRWGWLDTNPVTTFGKRGLREGRPRTRFLTQAEFDRLLAAASPSL 179

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLLAMT 248
           +P  A    + +G+R  +     +  +  N     ++  KTG+   V L D  +  +   
Sbjct: 180 RP--AITLAVETGMRREELFGLTITAIDLNRREVHLERTKTGSPRRVPLSDKAITTIKGL 237

Query: 249 ---PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATA 304
              P    + ++               F     +A V N   H +R   A+     G   
Sbjct: 238 LDEPGRPRSSYLFCKGDGSRYCDMKKGFGGACRRAKVTNMRWHDLRHTFASWYVQRGGDL 297

Query: 305 HELMATYGWKTVDQAETYTK 324
           + L    G   +     Y  
Sbjct: 298 YRLSRILGHSGLQMTARYGH 317


>gi|149201080|ref|ZP_01878055.1| site-specific tyrosine recombinase XerC [Roseovarius sp. TM1035]
 gi|149145413|gb|EDM33439.1| site-specific tyrosine recombinase XerC [Roseovarius sp. TM1035]
          Length = 306

 Score =  108 bits (271), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 43/253 (16%), Positives = 84/253 (33%), Gaps = 20/253 (7%)

Query: 104 RKSGDFDYRKITTKHIRSGVESRKHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
              G     +ITT  +R+ +   +     P S  + L++++  ++W   +E       L+
Sbjct: 48  ETQGLGALSRITTSDMRAWMAHTRGGDVGPRSLARKLSAVKSFYRWLSEREGFEPTAVLA 107

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWS-------EGSQPRLAFEFLLYSGLRCSDSCRAG 213
           +  PK + +  RP + E      +            ++ +     L   GLR S++    
Sbjct: 108 IRSPKFQRKLPRPLSPEAASDMINTLDAQSLTPWIAARDQAVVTLLYGCGLRISEALSLT 167

Query: 214 VQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI-------GKETFFINNDKQKMNA 266
              L          K G    V + +     +A                F+      ++ 
Sbjct: 168 GADLPLGQVLRIIGKGGKERLVPVIEPARAAVAQYARLCPYDIPRNGPLFLGARGGALSP 227

Query: 267 TQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
                  +    + G+  +A  H +R   AT   +AG     +    G  ++   + YT 
Sbjct: 228 RLIQKVMEQARAQLGLPATATPHAMRHSFATHLLNAGGDLRAIQELLGHASLSTTQAYT- 286

Query: 325 GADRIRLGIKNSR 337
           G D  RL    +R
Sbjct: 287 GVDTARLMEVYAR 299


>gi|53714080|ref|YP_100072.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|253567394|ref|ZP_04844843.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5]
 gi|255009170|ref|ZP_05281296.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           3_1_12]
 gi|298483947|ref|ZP_07002117.1| tyrosine type site-specific recombinase [Bacteroides sp. D22]
 gi|313146917|ref|ZP_07809110.1| integrase [Bacteroides fragilis 3_1_12]
 gi|52216945|dbj|BAD49538.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|251943963|gb|EES84491.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5]
 gi|298269856|gb|EFI11447.1| tyrosine type site-specific recombinase [Bacteroides sp. D22]
 gi|313135684|gb|EFR53044.1| integrase [Bacteroides fragilis 3_1_12]
          Length = 376

 Score =  108 bits (271), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 43/218 (19%), Positives = 77/218 (35%), Gaps = 21/218 (9%)

Query: 127 KHTPSSA---IQFLTSMRVLFKWAVRQEYVAINP---CLSVERPKRKTEGIRPWTKEDMQ 180
           K  P SA     +          AVR + +  NP       E+PK         T E+++
Sbjct: 154 KGKPISASTRNTYYQIFNGALNAAVRAKRILKNPFNEMEKSEKPKMPESVRSYMTIEEVR 213

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT----QKTGTIITVE 236
              +   +    + A+ F  + GLR SD      + +  +    +     QKT   I + 
Sbjct: 214 SLIATPMQNEGVKSAYLFSCFCGLRISDIIGLQWKDVFIDNGQYRLAVAMQKTKEPIYLP 273

Query: 237 LPDGFMKLL--AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292
           L +  +K +         +  F          +  +   K  A  AG++K  + H  R  
Sbjct: 274 LSNEALKWMPERGDKTADDHVF-------DLPSGINQLIKPWAKAAGISKRFTFHTARHT 326

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
            AT+    GA  + +    G  +V   + Y K  ++ +
Sbjct: 327 FATMMLTLGADLYTVSKLLGHTSVKMTQVYAKIVNKKK 364


>gi|293371342|ref|ZP_06617779.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|294645314|ref|ZP_06723030.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294808774|ref|ZP_06767507.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
 gi|292633702|gb|EFF52257.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|292639393|gb|EFF57695.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294444071|gb|EFG12805.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
          Length = 376

 Score =  108 bits (271), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 43/218 (19%), Positives = 77/218 (35%), Gaps = 21/218 (9%)

Query: 127 KHTPSSA---IQFLTSMRVLFKWAVRQEYVAINP---CLSVERPKRKTEGIRPWTKEDMQ 180
           K  P SA     +          AVR + +  NP       E+PK         T E+++
Sbjct: 154 KGKPISASTRNTYYQIFNGALNAAVRAKRILKNPFNEMEKSEKPKMPESVRSYMTIEEVR 213

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT----QKTGTIITVE 236
              +   +    + A+ F  + GLR SD      + +  +    +     QKT   I + 
Sbjct: 214 SLIATPMQNEGVKSAYLFSCFCGLRISDIIGLQWKDVFIDNGQYRLAVAMQKTKEPIYLP 273

Query: 237 LPDGFMKLL--AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292
           L +  +K +         +  F          +  +   K  A  AG++K  + H  R  
Sbjct: 274 LSNEALKWMPERGDKTADDHVF-------DLPSGINQLIKPWAKAAGISKRFTFHTARHT 326

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
            AT+    GA  + +    G  +V   + Y K  ++ +
Sbjct: 327 FATMMLTLGADLYTVSKLLGHTSVKMTQVYAKIVNKKK 364


>gi|254884116|ref|ZP_05256826.1| tyrosine type site-specific recombinase [Bacteroides sp. 4_3_47FAA]
 gi|254836909|gb|EET17218.1| tyrosine type site-specific recombinase [Bacteroides sp. 4_3_47FAA]
          Length = 376

 Score =  108 bits (271), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 43/218 (19%), Positives = 78/218 (35%), Gaps = 21/218 (9%)

Query: 127 KHTPSSA---IQFLTSMRVLFKWAVRQEYVAINP---CLSVERPKRKTEGIRPWTKEDMQ 180
           K  P SA     +          AVR + +  NP       E+PK         T E+++
Sbjct: 154 KGKPLSASTRNTYYQIFNGALNAAVRAKRILKNPFNEMEKSEKPKMPESVRSYMTIEEVR 213

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT----QKTGTIITVE 236
              +   +    + A+ F  + GLR SD      +++  +    +     QKT   I + 
Sbjct: 214 SLIATPMQNEGVKSAYLFSCFCGLRISDIIGLQWKNVFIDNGQYRLAVAMQKTKEPIYLP 273

Query: 237 LPDGFMKLL--AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292
           L +  +K +         +  F          +  +   K  A  AG++K  + H  R  
Sbjct: 274 LSNEALKWMPERGDKTADDHVF-------DLPSGINQLIKPWAKAAGISKRFTFHTARHT 326

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
            AT+    GA  + +    G  +V   + Y K  ++ +
Sbjct: 327 FATMMLTLGADLYTVSKLLGHTSVKMTQVYAKIVNKKK 364


>gi|170718451|ref|YP_001783668.1| site-specific tyrosine recombinase XerC [Haemophilus somnus 2336]
 gi|189030077|sp|B0UWL5|XERC_HAES2 RecName: Full=Tyrosine recombinase xerC
 gi|168826580|gb|ACA31951.1| tyrosine recombinase XerC [Haemophilus somnus 2336]
          Length = 295

 Score =  108 bits (271), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 39/272 (14%), Positives = 94/272 (34%), Gaps = 22/272 (8%)

Query: 74  LISEYRKSAH-WGSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIR---SGVESR 126
           L+ +Y         L+  + I+++   ++I   ++++    ++++T   +R   +     
Sbjct: 4   LLQKYYNYLRIERQLSPYTLINYQRQLEKIVVILQQNDIHSWQQVTPSVVRFVLAQSRKE 63

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF---K 183
                S    L+++R    + V Q  + +N  + +  PK+     +    E +QQ    +
Sbjct: 64  GLHERSLALRLSALRQFLNYLVVQGELKVNSAVGISAPKQSKYLPKNMDMEQVQQLLTNE 123

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-------- 235
           S      + +   E +  SGLR S+     +  +      ++    G    +        
Sbjct: 124 SKEPIDLRDKAMMELMYSSGLRLSELQSLNLNSINIRSREVRVIGKGNKERILPFGRYAS 183

Query: 236 -ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKF 292
             +       L   P   E  F++    +++        +    + G+N     H +R  
Sbjct: 184 QAIQQWLKVRLLFNP-KDEALFVSQLGNRISHRSIQKRMETWGIRQGLNGHLNPHKLRHS 242

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324
            AT   +  +    +    G   +   + YT 
Sbjct: 243 FATHMLENSSDLRAVQELLGHSNLSTTQIYTH 274


>gi|295694704|ref|YP_003587942.1| integrase family protein [Bacillus tusciae DSM 2912]
 gi|295410306|gb|ADG04798.1| integrase family protein [Bacillus tusciae DSM 2912]
          Length = 303

 Score =  108 bits (271), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 45/275 (16%), Positives = 92/275 (33%), Gaps = 20/275 (7%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKH 128
               + E+  +      AV +   +  +     R+  D   D+  +    +    + R+ 
Sbjct: 4   WHDALEEFLLTKQAEGRAVRTLKDYRKHVSAFFREHEDAWPDHHALKRAVVAHFADLREL 63

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG-IRPWTKEDMQQFKSFWS 187
           + +        ++  F W +R+EY+  NP  ++  PKRK +G  R    + +++  +   
Sbjct: 64  SATHYNLRREYLKAFFSWCIREEYLPKNPADNI--PKRKNDGTPRNLDHDTLKRLLALPR 121

Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIITVELPD 239
                G +      F L +G R  ++ +    H       +     T KT    TV +  
Sbjct: 122 KDTYAGVRDYALMLFQLDTGTRPGEALQLLPDHFNLAALEVIIPSGTAKTRAARTVVVSP 181

Query: 240 GFMKLLAMTP-------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKF 292
              K +                 F +   ++     +         + GV  +A+ +R  
Sbjct: 182 QTAKAIRRLLSVRPADWTDDVPVFASASGRRFTVHGWDQRLAKYGERLGVRLTAYMLRHS 241

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           SA +    G     L    G  ++   + Y   AD
Sbjct: 242 SAILFLRGGGHVFALQRQLGHTSLVMTKRYVHLAD 276


>gi|237719978|ref|ZP_04550459.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4]
 gi|229450530|gb|EEO56321.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4]
          Length = 376

 Score =  108 bits (271), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 43/218 (19%), Positives = 78/218 (35%), Gaps = 21/218 (9%)

Query: 127 KHTPSSA---IQFLTSMRVLFKWAVRQEYVAINP---CLSVERPKRKTEGIRPWTKEDMQ 180
           K  P SA     +          AVR + +  NP       E+PK         T E+++
Sbjct: 154 KGKPLSASTRNTYYQIFNGALNAAVRAKRILKNPFNEMEKSEKPKMPESVRSYMTIEEVR 213

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT----QKTGTIITVE 236
              +   +    + A+ F  + GLR SD      +++  +    +     QKT   I + 
Sbjct: 214 SLIATPMQNEGVKSAYLFSCFCGLRISDIIGLQWKNVFIDNGQYRLAVAMQKTKEPIYLP 273

Query: 237 LPDGFMKLL--AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292
           L +  +K +         +  F          +  +   K  A  AG++K  + H  R  
Sbjct: 274 LSNEALKWMPERGDKTADDHVF-------DLPSGINQLIKPWAKAAGISKRFTFHTARHT 326

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
            AT+    GA  + +    G  +V   + Y K  ++ +
Sbjct: 327 FATMMLTLGADLYTVSKLLGHTSVKMTQVYAKIVNKKK 364


>gi|228926906|ref|ZP_04089972.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|228936985|ref|ZP_04099727.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|228822700|gb|EEM68590.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|228832641|gb|EEM78212.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
          Length = 368

 Score =  108 bits (271), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 54/293 (18%), Positives = 104/293 (35%), Gaps = 36/293 (12%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE 124
               TLK  + ++ +     S+  +S   ++S  +  II   G     K+   HI+   +
Sbjct: 60  PSKITLKDYLIQWLEIKK-MSVEKSSLSRYQSNINKHIIPNIGMISLHKLNVMHIQKCYQ 118

Query: 125 SRKHTPSSAIQFLTSMRVL---FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
           S  ++  +    L   R+L      AV+Q  ++ NP      PK++   I+ WT+E+++Q
Sbjct: 119 SALNSGIANNTILFQHRILTAALNLAVKQNIISRNPATLAVIPKKEKSSIQTWTEEEVKQ 178

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--------------NNIFSIKTQ 227
           F    S+ S+  + +   + +G+R  +      Q +               +N      +
Sbjct: 179 FL-LHSQESRYHIGYLLAITTGMRLGEVLGLRWQDVDFNNHTVTINQTLGHDNKIKTSAK 237

Query: 228 KTGTIITVELP----DGFMKL--------LAMTPI--GKETFFINNDKQKMNATQFSIWF 273
              +  T+ +P    +   K         L + P     +    N   +    T F+  F
Sbjct: 238 NNSSKRTIPIPLEVIEELKKCKLQINKDKLRIGPAYHDLDLIVCNKLGKVTTRTTFTRHF 297

Query: 274 KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTK 324
                 AG+ K   H  R   AT+    G     +    G   +      Y+ 
Sbjct: 298 DKVIKNAGIKKIKFHDTRHTHATLLLKQGVHPKVVSERLGHSDISLTLRVYSH 350


>gi|217962623|ref|YP_002341195.1| site-specific recombinase, phage integrase family [Bacillus cereus
           AH187]
 gi|229142474|ref|ZP_04270973.1| Site-specific recombinase, phage integrase [Bacillus cereus
           BDRD-ST26]
 gi|217067985|gb|ACJ82235.1| site-specific recombinase, phage integrase family [Bacillus cereus
           AH187]
 gi|228640987|gb|EEK97319.1| Site-specific recombinase, phage integrase [Bacillus cereus
           BDRD-ST26]
          Length = 322

 Score =  108 bits (271), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 44/284 (15%), Positives = 93/284 (32%), Gaps = 28/284 (9%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES---RKHTPSSAIQFLTSMRV 142
                +   +   F   +R+        IT  H++  +     R+  P++    +++++ 
Sbjct: 41  GFRKRTIDDYSKLFRYFMRELNIEKVEIITVAHVQMYINKLLNRELAPTTVNIRISALKS 100

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLAFEF 198
           +FK    Q Y+  NP +   + +     I       +++           G +       
Sbjct: 101 VFKRLHEQGYIKSNPAVDFVKLRTDEAPIFTLNNNQIKRLFRVVDKTTYAGYRDYCTMLL 160

Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQ----KTGTIITVELPDGFMKLLAMTPIGKET 254
           +L+ GLR ++  +  V  +  + F+I       K      V +     + L M       
Sbjct: 161 MLHCGLRVNEVNQLEVNDIDFDNFTIMLAGAKNKNRKTRAVPMTKKVAEELRMLIDESRE 220

Query: 255 FF-------INNDKQKMNATQFSIWFKAKATKAGVNK----SAHGVRKFSATISADAGAT 303
           +F       +  + + ++            T AG+ K    S H +R   AT     G +
Sbjct: 221 YFGGITNVFLTQEGKVIDNDLLRKRMYRYGTLAGLLKECRPSPHSLRHTFATSFLRNGGS 280

Query: 304 AHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
            + LM   G   +     Y       RL  +  +     V + +
Sbjct: 281 VNALMRIMGHADITTTMRYV------RLNDEAVKEQYEKVAAKN 318


>gi|28493419|ref|NP_787580.1| integrase/recombinase [Tropheryma whipplei str. Twist]
 gi|28476460|gb|AAO44549.1| integrase/recombinase [Tropheryma whipplei str. Twist]
          Length = 316

 Score =  108 bits (271), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 40/263 (15%), Positives = 95/263 (36%), Gaps = 23/263 (8%)

Query: 85  GSLAVNSRISFESYF----DQIIRKSGDFDYRKITT---KHIRSGVESRKHT-PSSAIQF 136
              + ++  ++        + II      + + +     + +RS + S+ H    S  + 
Sbjct: 37  RGYSSHTCRAYYRDLMCFGEYIITHDSRENVKSLRDVSIQDLRSWLYSQSHKSARSIRRA 96

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG-----SQ 191
           ++S++  F+WA  ++  A N   ++  PK  ++     +++ + Q    +S        +
Sbjct: 97  VSSLKSFFRWAYDRKITAQNTAAALRAPKSTSQLPSVLSEKRIAQILGNFSHTVPVIQLR 156

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM--- 247
               FE L  S +R S+     +  + +++ +++   K G    V         L +   
Sbjct: 157 NTAIFELLYASAIRVSELVSLDLDSIDHDLCTVRVDGKNGKQRVVLFGKPASHALDLYLN 216

Query: 248 ------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAG 301
                 +    +  F+ +  +++N                  +  H +R  +AT   D G
Sbjct: 217 MRHTLLSDRSSKALFLGSRGRRINPRVVYRLVSELLEMPKGPRGPHVLRHSAATHMLDNG 276

Query: 302 ATAHELMATYGWKTVDQAETYTK 324
           A    L    G  ++   + YT 
Sbjct: 277 ADLRSLQEILGHSSLSTTQIYTH 299


>gi|145594467|ref|YP_001158764.1| site-specific tyrosine recombinase XerD [Salinispora tropica
           CNB-440]
 gi|145303804|gb|ABP54386.1| tyrosine recombinase XerD [Salinispora tropica CNB-440]
          Length = 325

 Score =  108 bits (271), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 58/312 (18%), Positives = 100/312 (32%), Gaps = 46/312 (14%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK---SG 107
           +T            R     L  L  E         LA N+  S+       +      G
Sbjct: 1   MTAEAEPDPAPALRRAVRGYLDHLAVE-------RGLAANTLASYRRDLAHYLDTLASIG 53

Query: 108 DFDYRKITTKHIRSGVESRK-----HTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCL 159
             D   +    + + +   +       P   SSA + ++++R L ++A+R+     +P  
Sbjct: 54  VTDLASVAPGQVEAHLARLRVGNEGRRPLAASSAARAVSAVRGLHRFALREGLTGADPSR 113

Query: 160 SVERPKRKTEGIRPWTKEDMQQFKSF----------WSEGSQPRLAFEFLLYSGLRCSDS 209
            V  P       R    +D+ +                 G + R   EFL  +G R S++
Sbjct: 114 DVRPPAPPRRLPRALPVDDVIRLLEAVGPVSAAGGQAPLGLRDRALLEFLYGTGARISEA 173

Query: 210 CRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLL-----------AMTPIGKETFFI 257
             A V  L  +  ++    K G    V +    +  L           A    G    F+
Sbjct: 174 VGAAVDDLDLDAGAVLLRGKGGRNRLVPIGGYAVAALHAYLVRARPGLAAAGGGTPRVFL 233

Query: 258 NNDKQKMNATQFSIWFKAKATKAGV------NKSAHGVRKFSATISADAGATAHELMATY 311
           N+    ++        +  A +AG+        S H +R   AT   D GA    +    
Sbjct: 234 NSRGGPLSRQGAWTILRNAARRAGLSDVGPQAVSPHTLRHSYATHLLDGGADVRVVQELL 293

Query: 312 GWKTVDQAETYT 323
           G  +V   + YT
Sbjct: 294 GHASVTTTQVYT 305


>gi|58040221|ref|YP_192185.1| integrase/recombinase XerD [Gluconobacter oxydans 621H]
 gi|58002635|gb|AAW61529.1| Integrase/recombinase XerD [Gluconobacter oxydans 621H]
          Length = 311

 Score =  108 bits (271), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 45/283 (15%), Positives = 95/283 (33%), Gaps = 21/283 (7%)

Query: 85  GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMR 141
              A+ +R ++ S               + R    +   + +        +A + L+ +R
Sbjct: 25  RGAALKTRQAYASDLADFATHCAPLSLSEARGEEVRSYLAELSRAGLAARTAARRLSCLR 84

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP-------RL 194
             +++ + +     +P    + P+  +   RP  +++++      + G +        R 
Sbjct: 85  QFYRFLMLESVREDDPTERQQAPRITSSLPRPLDEDEIRLLLETGTRGHENERRDIVSRA 144

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAMT----- 248
           A E L  +GLR S+        +       +   K G    V L                
Sbjct: 145 ALELLYTTGLRISELLALPATCVHVRGPMLLVRGKGGRERLVPLSQSARDAADQLVHFDR 204

Query: 249 PIGKETFFINND-KQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATA 304
            +G    F   D ++ +    F     A A KAG++    S H +R   A+     GA  
Sbjct: 205 DLGSPWLFPGRDPQKHLTRQGFDKILLACALKAGLDPDRVSPHVLRHSFASHLLAHGADL 264

Query: 305 HELMATYGWKTVDQAETYTKG-ADRIRLGIKNSRRISSVVDSD 346
             L    G   +   + YT+  ++R+R  +     ++    + 
Sbjct: 265 RALQMLLGHADIATTQIYTQVMSERLRQAVAAHHPLARKAGAP 307


>gi|56417058|ref|YP_154132.1| integrase/recombinase ripx [Anaplasma marginale str. St. Maries]
 gi|222475424|ref|YP_002563841.1| integrase/recombinase ripx (xerC) [Anaplasma marginale str.
           Florida]
 gi|56388290|gb|AAV86877.1| integrase/recombinase ripx [Anaplasma marginale str. St. Maries]
 gi|222419562|gb|ACM49585.1| integrase/recombinase ripx (xerC) [Anaplasma marginale str.
           Florida]
          Length = 316

 Score =  108 bits (271), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 35/270 (12%), Positives = 89/270 (32%), Gaps = 32/270 (11%)

Query: 85  GSLAVNSRISFESYFDQI---------IRKSGDFDYRKITTKHIRSGVESR----KHTPS 131
              + N+  ++E                R     + +++ +   RS +  R    K + S
Sbjct: 25  RRYSPNTVAAYERDIMDFYRSVCGEPCERSVSLQEVQELRSAEFRSWLADRFKQGKQSAS 84

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKSFWS 187
           +A + ++ +R  F++   +  +  +   ++ +P  +    +   +  M    ++ +    
Sbjct: 85  NA-RAISVVRSFFRYLHHKCGMKSSVVFNISKPIVRRSLPKVLEEPQMRKVMEEPEDLHW 143

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA- 246
              +       L   GLR S++       L+ +   +   K      + +      ++  
Sbjct: 144 THRRDLAVSALLYGCGLRISEAVNIKFCDLRQDELRV-LGKGSKERVIPILPWVRCIIDE 202

Query: 247 ----------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSA 294
                           E  F+     +++ T F+   K    + G+ ++   H +R   A
Sbjct: 203 YVASCPHQRVHGASSTEYVFVGLRGGRLSRTYFAYRMKGLRRRIGLPETTTPHTLRHSFA 262

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324
           T     GA    +    G  ++   + YT 
Sbjct: 263 THLFLEGADIRVVQELLGHASLATTQVYTH 292


>gi|186471692|ref|YP_001863010.1| integrase family protein [Burkholderia phymatum STM815]
 gi|184198001|gb|ACC75964.1| integrase family protein [Burkholderia phymatum STM815]
          Length = 292

 Score =  108 bits (271), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 40/265 (15%), Positives = 90/265 (33%), Gaps = 18/265 (6%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG----VESRKHT 129
           L           +L+ N++ S+        R         +  + IR+      E RK  
Sbjct: 4   LRQRMLHDMQIRNLSDNTQKSYLLQVSSFARHF-RRSPEMLGPEEIRAWLIYLREERKLA 62

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
           P+S    + ++R L++  +++++   +       P++        + E++  F       
Sbjct: 63  PASLSPAIGALRFLYRVTLKRDWSDED----FPLPRKPVRLPVVLSLEEITTFFDSIPS- 117

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLAM 247
            + R        +GLR S+     V  + +    I+    K      V L    +++L  
Sbjct: 118 LKHRTILMVAYAAGLRVSEVVHLKVTDIDSKRMVIRVNQGKNRKDRYVMLSPRLLEVLRT 177

Query: 248 ---TPIGKETFFINN-DKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301
                  ++  F  +     +  T  +        ++G+ K  + H +R   AT   + G
Sbjct: 178 YWQDAHPRDWLFPGDIPGHPITRTAVARICALARQRSGITKPVTPHSLRHAFATHLLETG 237

Query: 302 ATAHELMATYGWKTVDQAETYTKGA 326
                +    G +++     Y + A
Sbjct: 238 TDVRRIQLLMGHRSLATTSRYLRIA 262


>gi|312973894|ref|ZP_07788065.1| phage integrase family protein [Escherichia coli 1827-70]
 gi|310331428|gb|EFP98684.1| phage integrase family protein [Escherichia coli 1827-70]
 gi|323972701|gb|EGB67903.1| phage integrase [Escherichia coli TA007]
          Length = 375

 Score =  108 bits (271), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 41/264 (15%), Positives = 84/264 (31%), Gaps = 24/264 (9%)

Query: 73  WL--ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE--SRKH 128
           WL  +  Y+KS          +         +    G    R IT   +         K 
Sbjct: 102 WLPDLQLYKKSP---------QSELSKLNLYVRPFWGKRQLRDITAGELEQYAAGLREKL 152

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF-KSFWS 187
            PS+  + L  +  +   AVR  ++  +P   V   K      R  +  ++ +F  +  +
Sbjct: 153 RPSTVNRILAILSKICSLAVRAGWITHSPMTHVRYLKENNIRYRTLSATEIPRFINAATA 212

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
             +    +    LY+G+R  + C    +  H   +   +   K+G   T  L    + ++
Sbjct: 213 LQTPAADSILLALYTGMRIGEVCTLKWEYWHPDMHQLILPDTKSGHPFTCPLAPPAIAVV 272

Query: 246 AMTPI---GKETFF--INNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISAD 299
                    K   F  + ++ + +   + +  F      A ++    H +R+  AT    
Sbjct: 273 QCQQDLMLSKTYIFPQLTDNARPLAYPRAT--FARICRDANIDNLRMHDLRRTFATRVLQ 330

Query: 300 AGATAHELMATYGWKTVDQAETYT 323
           A              ++     Y 
Sbjct: 331 ATGDIAIASHLLNHHSLTATRRYA 354


>gi|227431599|ref|ZP_03913636.1| site-specific recombinase XerD [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
 gi|227352657|gb|EEJ42846.1| site-specific recombinase XerD [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
          Length = 300

 Score =  108 bits (271), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 36/277 (12%), Positives = 98/277 (35%), Gaps = 27/277 (9%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYF----DQIIRKSGDFDYRKITTKHIRSGVE---S 125
            L  +Y +S      +  +  ++ +      + +    G   + ++ T  +R  +     
Sbjct: 7   QLYHDYLESER--QYSPQTLKAYLTDIAEFKNYLHESGGFTKFGEVQTLDVRVYLNDLYE 64

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +K   ++  + ++S+R+ +++ +  ++   NP  S+   K + +    + ++++ +    
Sbjct: 65  KKLARTTISRKISSLRMFYQFLIINQFAIDNPFDSISLKKHQNQLPDFFYEDELHELFDV 124

Query: 186 ---WSEGSQPRLA--FEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVE--- 236
                +    R A   EFL  +G+R ++     +  L  +    +   K      V    
Sbjct: 125 TYNHEDHLWERNAALLEFLYATGIRVAEIAGLTLSQLDFSQRLVLIHGKGNKDRYVPFGH 184

Query: 237 ----LPDGFMKLLAMTPI---GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AH 287
               +   ++  L  +       E  F+N+  + +     +        ++ +      H
Sbjct: 185 FAENIMKEYITDLRASLTVNQEHEYVFVNHRGEPITPAGITYILNQLMQRSALTGKIHPH 244

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            +R   AT   + GA    +    G   +   + YT 
Sbjct: 245 MLRHTFATHLINRGADMRTVQELLGHVNLSTTQMYTH 281


>gi|328542142|ref|YP_004302251.1| Integrase family protein [Polymorphum gilvum SL003B-26A1]
 gi|326411892|gb|ADZ68955.1| Integrase family protein [Polymorphum gilvum SL003B-26A1]
          Length = 403

 Score =  108 bits (271), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 60/375 (16%), Positives = 111/375 (29%), Gaps = 52/375 (13%)

Query: 13  KERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN------SPRK 66
           + R+ +G   Y  R     R+R     + TF     + L     +            P  
Sbjct: 7   RVRSDNGDSYYRVRV----RVRGLPEKQKTFKRLTDAKLWAQQTEAAIRRGEVQNVVPAA 62

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
           K  TL  +I  Y+K       A +++ +  +Y     +  G +    IT + I + +E  
Sbjct: 63  KGKTLADVIERYKK-RVLPHRAESTQRAAVTYLAYWEKALGTYGLTYITAELIEAELEKL 121

Query: 127 KH------------------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP-KRK 167
                               +  +   +  ++ +L K A    +   NP   V      +
Sbjct: 122 AAAGDTRRKSDEGEPAGKPKSRKTIKHYRDTLALLMKHAKAWGWATQNPMEGVTPITNIR 181

Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNIFS-- 223
            E  R  +  +              +L     F L +G R S+     +  +     S  
Sbjct: 182 DERTRFLSDAERAVLLDACKASDNDQLFNIVVFALSTGARKSEILGLTLADVDLQRGSAI 241

Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF-----------SIW 272
            +  K G      L      LL       E  +            F              
Sbjct: 242 FRDTKNGDTRAAPLARHLRDLLTGQVAKAEALYAALPHAPKTRWLFPRADGVLPIDIRTA 301

Query: 273 FKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           ++    KAG+ +   H +R  +A+  A  GA+  E+    G +T+     Y        L
Sbjct: 302 WENARDKAGLVDFRFHDLRHSTASYLAMKGASLVEIAEVLGHRTLQMVRRYAH------L 355

Query: 332 GIKNSRRISSVVDSD 346
              + + +   +  D
Sbjct: 356 SESHVKGLVESLGED 370


>gi|298241379|ref|ZP_06965186.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
 gi|297554433|gb|EFH88297.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
          Length = 293

 Score =  108 bits (271), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 41/271 (15%), Positives = 91/271 (33%), Gaps = 18/271 (6%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
           + ++  S        N+  ++       +  +  F                  H+ ++  
Sbjct: 8   VEQFLASLRARHAPANTIKAYSHDLRHFLAAAPTFLVEVTAPLIQEFLQGDGHHSVATRG 67

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-FKSFWSEGSQPR 193
           +  +++   + WA+RQE V+ NP   ++   +  +  RP   E++ + FK+      + R
Sbjct: 68  RRYSTLCTFYHWAIRQELVSSNPMERLDPITQPQKEPRPLAPEEVDKIFKAISPSRLRDR 127

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDG------FMK 243
             F  L  +G+R  ++       +     +    +   K     TV L           +
Sbjct: 128 TLFMLLYETGVRVGEALALQYSDVTLAQDDEKIRV-FGKGQRERTVMLTAAPQSIRLLRR 186

Query: 244 LLAMTPIGKETFFINNDKQ-----KMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISA 298
            L  + I   + F  + +       ++ T     ++     AGV  + H +R   A+   
Sbjct: 187 HLKESHITSGSVFRGDPRYGGSPLPLDYTVVQKAWQKYCQAAGVQATIHQLRHSRASQLI 246

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRI 329
            AG     +    G + +     Y    D+ 
Sbjct: 247 QAGVPVTTVRKQMGHRNLQSTLRYA-EVDQA 276


>gi|239787464|emb|CAX83935.1| Tyrosine recombinase XerC subunit [uncultured bacterium]
          Length = 321

 Score =  108 bits (271), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 47/278 (16%), Positives = 88/278 (31%), Gaps = 38/278 (13%)

Query: 85  GSLAVNSRISFESYFD----QIIRKSG----DFDYRKITTKHIRSGV---ESRKHTPSSA 133
             L+ N+  ++    +       ++ G    +   R++  + +R+ +   +      S+ 
Sbjct: 19  RRLSPNTVSAYLRDLELFGRYWCQRHGGGLTEEQLRQMRPEDLRAFMGMGQREGAAKSTL 78

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG---- 189
            + + S+R  F++  R+     NP   V  PK+     R  T+ED  +            
Sbjct: 79  QRRMASVRAWFRYLEREGLAENNPAALVASPKQAQRLPRAPTEEDTARLIESLPPPGPQS 138

Query: 190 ----------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELP 238
                      +     E L  SGLR  + C      L      ++   K G    V L 
Sbjct: 139 PLTGWARVRLLRDGAILELLYGSGLRIGELCGLDRLDLNLRQAEVRVLGKGGKERLVPLG 198

Query: 239 D----------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286
                         K  A  P      F      ++N  +          + G+ +  + 
Sbjct: 199 SMAIQALERYLEARKAEAPPPDHLGPVFTGRQGGRLNPREVQRLVVKLRRRLGLPEKVTP 258

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           H +R   AT    AGA    +    G  ++   + YT 
Sbjct: 259 HALRHAFATHLLQAGADLRSIQEMLGHASLTTTQRYTH 296


>gi|153008242|ref|YP_001369457.1| site-specific tyrosine recombinase XerD [Ochrobactrum anthropi ATCC
           49188]
 gi|151560130|gb|ABS13628.1| tyrosine recombinase XerD [Ochrobactrum anthropi ATCC 49188]
          Length = 307

 Score =  108 bits (271), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 39/275 (14%), Positives = 88/275 (32%), Gaps = 38/275 (13%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKH---TPSSAIQFLTS 139
              A N+  S+    + +         +  +    HIRS +++        +S  + L++
Sbjct: 18  RGAAENTLESYRRDLEAVAEALSARGVNLAEAGADHIRSAIDAMATEGFAATSQARRLSA 77

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS--------- 190
           +R  F++   + Y   +P  +V+ PK++    +  + E++ +     +  +         
Sbjct: 78  LRQFFRFLYSEGYRQDDPTGTVDAPKKQKPLPKIMSVENVTKLLDRAALETSEEAEPAER 137

Query: 191 ----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLL 245
               +     E L  +G+R S+     V   + ++ F +   K      V L     + L
Sbjct: 138 FKALRLHALIETLYATGMRVSELVGLPVGVARIDHRFLLVCGKGSKERMVPLSPKAREAL 197

Query: 246 AM-------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---------SAHGV 289
                     P   +  ++       + +             G+           S H +
Sbjct: 198 QRFLALRDSLPGSDDNPWLF---PAFSESGHLARQVFARELKGLAARAGLSAAAVSPHVL 254

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           R   A+     GA    +    G   +   + YT 
Sbjct: 255 RHAFASHLLQNGADLRTVQQLLGHADISTTQIYTH 289


>gi|218288287|ref|ZP_03492586.1| integrase family protein [Alicyclobacillus acidocaldarius LAA1]
 gi|218241646|gb|EED08819.1| integrase family protein [Alicyclobacillus acidocaldarius LAA1]
          Length = 307

 Score =  108 bits (271), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 45/284 (15%), Positives = 90/284 (31%), Gaps = 21/284 (7%)

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE--- 124
             ++   +  +   A     +  +  S+    +   +   D     +     R       
Sbjct: 2   TQSVGDAVKAFLDDAA-LRFSPRTVRSYGQDLEAFRQWLDDRGVYDLDALSTRDVRMHAS 60

Query: 125 ---SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
              ++    SS  + L+ +R   ++   + +V      +V  PKR     R   +E++  
Sbjct: 61  DLLAKGAAKSSVARRLSCLRTFLRFCAERGWVRQVMAENVRLPKRDRRLPRYLHEEEVAA 120

Query: 182 FKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE 236
                        + R   EFL  +G+R S+     V  L  +    +   K G    V 
Sbjct: 121 LIDHVGGDDFVALRDRALLEFLYATGVRVSECVNLDVGDLDLSTGFARVLGKGGRERYVI 180

Query: 237 LPDGFMKLLAM-TPIGKET-----FFINNDKQKMNATQFSIWFKAKATKAGVNKSAH--G 288
           +    +  L    P+          FIN    ++         + +  +    +S H  G
Sbjct: 181 VGRRAVDALRRYLPLRDRMARCSAVFINRRGGRLTDRSVRRVLERRIQEVPGLRSIHVHG 240

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           +R   AT   + GA    +    G  ++   + YT    R +L 
Sbjct: 241 LRHSFATHMLNGGADLRSVQELLGHASLSSTQIYTHT-SREQLA 283


>gi|193214605|ref|YP_001995804.1| integrase family protein [Chloroherpeton thalassium ATCC 35110]
 gi|193088082|gb|ACF13357.1| integrase family protein [Chloroherpeton thalassium ATCC 35110]
          Length = 289

 Score =  108 bits (271), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 46/269 (17%), Positives = 100/269 (37%), Gaps = 20/269 (7%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI----RSGVESRKHT 129
           ++  Y+        + N++  + SYF       G+ +  K+TTK I       ++S+  +
Sbjct: 13  VLRRYKNLLIQKRYSQNTQDIYCSYFKDFCMYFGEEELEKLTTKQINSYILDLIKSKNIS 72

Query: 130 PSSAIQFLTSMRVLFK--WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            S   Q + +++  F+      ++Y        + RP+++ +  +  +K +++       
Sbjct: 73  ISQQNQRINAVKFYFEKVLGREKQYYE------LHRPRKENKLPKVLSKNEVKSILVSTD 126

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK-TGTIITVELPDGFMKLLA 246
              + +     +  +GLR S+        + +    I      G    + L    +  L 
Sbjct: 127 -NIKHKCILMLIYSAGLRRSELLNLKPTDIDSGRMLIHILGAKGKKDRISLLSENLLKLL 185

Query: 247 MT----PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
                    K+  F   D  K + T  +   K  + KAG++K  + H +R   AT   + 
Sbjct: 186 RQYYKEFHPKKYLFEGLDGGKYSPTSVANILKKASLKAGIHKNVTPHMLRHSFATHLLEQ 245

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRI 329
           G     +    G ++    E YT  + + 
Sbjct: 246 GTDLRYIQELLGHESSKTTEIYTHVSKKA 274


>gi|319897879|ref|YP_004136076.1| site-specific tyrosine recombinase [Haemophilus influenzae F3031]
 gi|329122492|ref|ZP_08251077.1| site-specific tyrosine recombinase XerC [Haemophilus aegyptius ATCC
           11116]
 gi|317433385|emb|CBY81765.1| site-specific tyrosine recombinase [Haemophilus influenzae F3031]
 gi|327473182|gb|EGF18604.1| site-specific tyrosine recombinase XerC [Haemophilus aegyptius ATCC
           11116]
          Length = 299

 Score =  108 bits (271), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 39/260 (15%), Positives = 88/260 (33%), Gaps = 21/260 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRKHTPSSAIQFLT 138
             ++ ++  +++   D  I+     D    T       + I +  + +     S    L+
Sbjct: 16  RQMSPHTITNYQHQLDATIKILAQQDIHAWTQVTPSVVRFILAESKKQGLKEKSLALRLS 75

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS---FWSEGSQPRLA 195
           ++R    + V+Q  + +NP   +  PK+     +    E +QQ  +         + R  
Sbjct: 76  ALRRFLSFLVQQGELKVNPATGISAPKQGKHLPKNMDGEQVQQLLANDSKEPIDIRDRAI 135

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLLA 246
            E +  SGLR S+     +  +   +  ++    G    V          + +       
Sbjct: 136 LELMYSSGLRLSELQGLDLNSINTRVREVRVIGKGNKERVVPFGRYASHAIQEWLKVRAL 195

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATA 304
             P   E  F++    +++        +    + G+N   + H +R   AT   +A +  
Sbjct: 196 FNP-KDEALFVSQLGNRISHRAIQKRLETWGIRQGLNSHLNPHKLRHSFATHMLEASSDL 254

Query: 305 HELMATYGWKTVDQAETYTK 324
             +    G   +   + YT 
Sbjct: 255 RAVQELLGHSNLSTTQIYTH 274


>gi|297242750|ref|ZP_06926688.1| site-specific recombinase XerD [Gardnerella vaginalis AMD]
 gi|296888961|gb|EFH27695.1| site-specific recombinase XerD [Gardnerella vaginalis AMD]
          Length = 319

 Score =  108 bits (271), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 37/266 (13%), Positives = 80/266 (30%), Gaps = 22/266 (8%)

Query: 81  SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSM 140
           S    S   +    +  +     +        ++  +     +        +  + L S+
Sbjct: 36  SKKTVSAYASDLQDYTCWLYDERKIKDITTISQLDIESYIRTLNELGLGTRTVARRLASI 95

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-------FKSFWSEGSQPR 193
               ++ +    +  +    V+ PK+        + E++ +       F S  +   +  
Sbjct: 96  HEWHRFMLAHGDIQADVSAQVKAPKQADYLPDVLSIEEVNRVIEAAGNFGSSDAISIRDT 155

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVEL------------PDG 240
              EFL  +G R S++     + +  N   +K T K      V +               
Sbjct: 156 ALLEFLYATGARISEAVGVKFEDIDLNESVVKLTGKGSKQRLVPIGGCAVRALRNYMEKS 215

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISA 298
             +L +       T F+N     ++             +A ++K    H +R   AT   
Sbjct: 216 RPELASKGKRELHTIFLNKRGNALSRQSAWAIVTQAGERAKLDKPLHPHTLRHSLATHLI 275

Query: 299 DAGATAHELMATYGWKTVDQAETYTK 324
             GA    +    G  +V   + YT 
Sbjct: 276 AGGADVRTVQELLGHASVTTTQIYTH 301


>gi|307692277|ref|ZP_07634514.1| Phage integrase [Ruminococcaceae bacterium D16]
          Length = 385

 Score =  108 bits (271), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 55/292 (18%), Positives = 97/292 (33%), Gaps = 38/292 (13%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESR--- 126
           L   +  + +     S+  ++   +  Y ++ +    GD    KIT + ++         
Sbjct: 71  LSQWLDRWLEEYAAPSVRPSTLDGYRRYIERNLKPYLGDKPVGKITREDVQKLYRELQRN 130

Query: 127 -----------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
                      K + SS  +    +      AVR+  +A NP   +  PK+KT   +   
Sbjct: 131 GRQEYHPEYGHKLSGSSIRRIHGVLHQAMDAAVRENLIARNPTEGITLPKKKTTPKQILN 190

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-------- 227
              +++F     +       F   L +GLR  + C            ++  +        
Sbjct: 191 DAQLERFMDVIQKDEVWHEFFYTELTTGLRRGEICGLMWSDFDAAHGTLTVRRTMHVQKG 250

Query: 228 --------KTGT-IITVELPDGFMKLLAMTPIGKET--FFIN--NDKQKMNATQFSIWFK 274
                   KTG    T+ LP   ++LLA       +   F N    +Q +N        K
Sbjct: 251 GGLAAGETKTGAGKRTITLPPSTVELLAQRKKQSYSQWIFPNPLRPEQPVNPNAAYDHLK 310

Query: 275 AKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTK 324
               +AG+     H +R   AT +  +G  A  L    G        +TYT 
Sbjct: 311 KLLQQAGLPSIRFHDLRHTFATHALASGVDAKTLSGILGHTQASFTLDTYTH 362


>gi|170747111|ref|YP_001753371.1| integrase family protein [Methylobacterium radiotolerans JCM 2831]
 gi|170653633|gb|ACB22688.1| integrase family protein [Methylobacterium radiotolerans JCM 2831]
          Length = 291

 Score =  108 bits (271), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 50/268 (18%), Positives = 86/268 (32%), Gaps = 27/268 (10%)

Query: 90  NSRISFESYFDQIIR---KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKW 146
             R   + Y   + R     GD D   +  +     +E+R    SSA + L+ +R   K+
Sbjct: 15  AYRRDLDDYLGYLARSGTALGDVDAGTL--RAFLIDLETRGLKASSAARRLSCVRGFHKF 72

Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW--------SEGSQPRLA--- 195
              +     +P ++V  P+R     +  +  ++ +  +            G   R     
Sbjct: 73  LYAEGGAESDPSVAVSGPRRGRALPKVLSIAEVDRLLATAQAAAGADQPPGPARRARRMV 132

Query: 196 --FEFLLYSGLRCSDSCRAGVQH-LQNNIFSIKTQKTGTIITVELPDGFMK----LLAMT 248
              E L  +GLR S+              + I   K G    V L +         L   
Sbjct: 133 CLLELLYATGLRVSELVALPRTAGASRERYLIVRGKGGRERLVPLTEAARAAMAAHLPAV 192

Query: 249 PIGKETFF-INNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATA 304
           P      F  ++D   +    F+   K  A  AG++    S H +R   A+     GA  
Sbjct: 193 PEDSPWLFPADSDSGYLTRQAFARDLKVLAAAAGLHPDRVSPHVLRHAFASHLLQNGADL 252

Query: 305 HELMATYGWKTVDQAETYTKGADRIRLG 332
             +    G   +   + YT   D     
Sbjct: 253 RIVQELLGHADISTTQIYTHVLDERLKA 280


>gi|152975083|ref|YP_001374600.1| phage integrase family protein [Bacillus cereus subsp. cytotoxis
           NVH 391-98]
 gi|152023835|gb|ABS21605.1| phage integrase family protein [Bacillus cytotoxicus NVH 391-98]
          Length = 304

 Score =  108 bits (271), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 49/278 (17%), Positives = 98/278 (35%), Gaps = 29/278 (10%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGV----ESRK 127
           + E+       +L+ ++  S++    +        G FD  K+T+K  +  +       K
Sbjct: 7   MQEFLDDRELRNLSKHTLKSYKGILKRFESFCVNKGIFDTDKVTSKVAKEFLIYCKHELK 66

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFK 183
           ++ S+  +   +++V FK+   +  V  NP   ++  K  T      T E +    + F 
Sbjct: 67  NSISTINEKNRTLKVYFKYLEEEGIVEENPFKKIKFSKEDTI-TDVLTDEQVKSVLEHFD 125

Query: 184 SFWSEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVEL 237
               +G+     + R+    L+ +GLR  +        +   N   +   K  T+ T+  
Sbjct: 126 RGHYKGTNFALMRNRMVIVLLISTGLRREELVNLKWSDIDMRNRTIMTYGKKRTVATIPY 185

Query: 238 PDGFMKLLAMTPIGKE----------TFFINNDKQKMNATQFSIWFKAKATKAGVNK-SA 286
                K LA      E            F +   +++     S  FK       +   + 
Sbjct: 186 TRKLQKELAEYKTFLEFYFEEEKEVVYVFPDKWNRQLTTEAISTLFKRLKKNLNMEGLTC 245

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           H  R++ A+     G  +  L      +T+   E Y K
Sbjct: 246 HAFRRYFASKCLKMGMDSLNLQKLMRHETLQMTERYVK 283


>gi|256845727|ref|ZP_05551185.1| DNA integration/recombination/invertion protein [Fusobacterium sp.
           3_1_36A2]
 gi|256719286|gb|EEU32841.1| DNA integration/recombination/invertion protein [Fusobacterium sp.
           3_1_36A2]
          Length = 405

 Score =  108 bits (271), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 60/393 (15%), Positives = 119/393 (30%), Gaps = 78/393 (19%)

Query: 10  FVTKERTRHGKIIY----YFRKGHGRRIRLPYPHEST-----------FIPAYMSALTGS 54
           + T    + GK  +    Y +K   R+  L    +S            F+   M  L   
Sbjct: 2   YTTSYTRKKGKYYHVVFEYVKKKGTRKKSLSRTTKSEDKEVADSMLDDFVTECMRILNID 61

Query: 55  TPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ------------- 101
              +    +           I+ Y K   +               +              
Sbjct: 62  KKYKPKNRNEII----FNKDINLYNKEISFCDFIYGYIKMRRKTIEDDTYSGYESIARCS 117

Query: 102 IIRKS--GDFDYRKITTKHIRSG----VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI 155
           +I      +   ++I    I       +  R  +P++ + +   + ++FK+A+R + ++I
Sbjct: 118 LIPYFYRENKKLKEIEDFDIEKYYYHELNYRNISPNTVLHYHYLLSLVFKYALRHKIISI 177

Query: 156 NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-EGSQPRLAFEFLLYSGLRCSDSCRAGV 214
           NP  SVE+PK+K      +  E++         E            Y GLR S+      
Sbjct: 178 NPLDSVEKPKKKKYVAEVYNAEEINILLDLLKREEESIYFGVLMAAYFGLRRSEVIGLKW 237

Query: 215 Q------------------HLQNNIFSIKTQKTGTI-------ITVELPDGFMKLLAMTP 249
                              ++      +   KT +        + +E+ +  +K+     
Sbjct: 238 SSINFEENTITIMSTVKETNIDGKHILVCQDKTKSPAGLRSFSLPIEIKELLLKIKEKQE 297

Query: 250 I------------GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATI 296
                         KE  ++++  +++     +  F     K  +     H +R   ATI
Sbjct: 298 ENKKYLGKCYYMEDKEYIYVDDGGKRLRPNYLTTRFGKFLKKFNLKHIRFHDLRHSCATI 357

Query: 297 SADAGATAHELMATYGWKTVDQA-ETYTKGADR 328
             D  A   E+    G  +V    E Y    +R
Sbjct: 358 LYDNNAGIKEIQTYLGHSSVKTTMEIYVHLMNR 390


>gi|186471361|ref|YP_001862679.1| integrase family protein [Burkholderia phymatum STM815]
 gi|186474500|ref|YP_001863471.1| integrase family protein [Burkholderia phymatum STM815]
 gi|186474622|ref|YP_001863593.1| integrase family protein [Burkholderia phymatum STM815]
 gi|184197670|gb|ACC75633.1| integrase family protein [Burkholderia phymatum STM815]
 gi|184198459|gb|ACC76421.1| integrase family protein [Burkholderia phymatum STM815]
 gi|184198581|gb|ACC76543.1| integrase family protein [Burkholderia phymatum STM815]
          Length = 292

 Score =  108 bits (271), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 42/265 (15%), Positives = 87/265 (32%), Gaps = 18/265 (6%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG----VESRKHT 129
           L           +LA N++ S+        R         +  + IR+      E RK  
Sbjct: 4   LRQRMLHDMQIRNLAENTQKSYLIQVSSFARHF-RRSPELLGPEEIRAWLIYLREERKLA 62

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
           P+S    + ++R L++  +++++   +       P++        + E++  F       
Sbjct: 63  PASLSPAIGALRFLYRVTLKRDWSDED----FPLPRKPVRLPVVLSLEEITTFFDSIPS- 117

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLAM 247
            + R        +GLR S+     V  + +    I+    K      V L    +++L  
Sbjct: 118 LKHRTILMVAYAAGLRVSEVVHLKVTDIDSKRMVIRVNQGKNRKDRYVMLSPRLLEILRT 177

Query: 248 ----TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301
                      F  +     +     S        + G+ K  + H +R   AT   +AG
Sbjct: 178 YWQDAHPRGWLFPGDIPGHPITRGAVSRICALARQRCGIRKPITPHSLRHAFATHLLEAG 237

Query: 302 ATAHELMATYGWKTVDQAETYTKGA 326
                +    G +++     Y + A
Sbjct: 238 TDVRRIQLLMGHRSLATTSRYLRIA 262


>gi|116625160|ref|YP_827316.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116228322|gb|ABJ87031.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 301

 Score =  108 bits (271), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 41/268 (15%), Positives = 90/268 (33%), Gaps = 23/268 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG----VESRKHTPSSAIQFLTSM 140
            + +  +   +     +           ++  +HIR      V+ RK  P + +  ++++
Sbjct: 22  RNYSQATARPYVGAIQRFAEHF-HRSPDQLGPEHIREYQLHLVQDRKLHPRTVMIQMSAL 80

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKR-KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199
           R  F+  +++ +   +    +  PK  + +     +++++ +  +  +   + R     L
Sbjct: 81  RFFFRKVLKRRFDRDD----LPLPKLLRRQIPTVLSRDEVARLIA-AAGNLRHRTILMAL 135

Query: 200 LYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMK----LLAMTPIGKE 253
             +G+R ++ C   ++ +        I+  K G    V LP   +          P    
Sbjct: 136 YATGMRRAELCHLRIEDIDKERMVLHIRQGKGGKDREVPLPPKLLAQLRIHYRALPHRSA 195

Query: 254 TFFINNDKQ----KMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHEL 307
             F +   +     M         +  A +AG+ KS   H +R   AT   D GA    +
Sbjct: 196 WVFPSLQSRRPDQPMTEKAVWHACRQAAWRAGITKSVHPHTLRHCFATHLLDNGAELPVI 255

Query: 308 MATYGWKTVDQAETYTKGADRIRLGIKN 335
               G         Y     R      N
Sbjct: 256 QVLLGHSDPRDTMIYLHLCTRQLRAAPN 283


>gi|310768311|gb|ADP13261.1| site-specific tyrosine recombinase XerC [Erwinia sp. Ejp617]
          Length = 351

 Score =  108 bits (271), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 48/305 (15%), Positives = 103/305 (33%), Gaps = 33/305 (10%)

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFE---SYFDQIIRKSGDFD 110
             P    I+  R    TL+ L   +         +  +   +              G   
Sbjct: 5   KPPTATEIHISRHG-QTLRQLAESWLSHLAAAGRSPRTVQGYRERVRALLAWCEPRGITY 63

Query: 111 YRKITTKHIRSGVE-----SRKHTPSSA----IQFLTSMRVLFKWAVRQEYVAINPCLSV 161
             +++   + S         R      A       L+++R+L +W +++ ++  NP   +
Sbjct: 64  APQVSLAVLESYQRWLQGYRRADGRQLAVNGQRHLLSAIRMLLRWLLQRHHILYNPAELL 123

Query: 162 ERPKRKTEGI-RPWTKED----MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216
           E PK +     + +++ +    +Q   +    G + R   E L  SG+R S+     +  
Sbjct: 124 ELPKEERRLPAQVFSEAETRRVLQSLDAGTPPGLRNRAILELLWSSGIRRSELAGLLLSD 183

Query: 217 LQ--NNIFSIKTQKTGTIITVEL----PDGFMKLLA------MTPIGKETFFINNDKQKM 264
           +     + +++  K G    V +         + L                FI++    +
Sbjct: 184 VDFTRGVVNVRRGKGGKDRVVPVGHAALMWLGRYLQDVRPRLAQRFDSGHLFISHKGTGL 243

Query: 265 NATQFSIWF-KAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
                +    +A  + A + K+   H  R   AT   + GA    + A  G + ++  + 
Sbjct: 244 AHGTLTAMAGRAIRSGAHLKKAGACHIFRHSMATQMLENGADTRHIQAILGHEKLETTQI 303

Query: 322 YTKGA 326
           YT+ A
Sbjct: 304 YTRVA 308


>gi|257451607|ref|ZP_05616906.1| integrase/recombinase, phage integrase family protein
           [Fusobacterium sp. 3_1_5R]
          Length = 346

 Score =  108 bits (271), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 46/315 (14%), Positives = 111/315 (35%), Gaps = 23/315 (7%)

Query: 46  AYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK 105
            +  AL+     ++          T ++L  ++       +L+ NS   ++   ++    
Sbjct: 35  QFSLALSKYNLVKKGKYEVVVSENTNEFLWKKFFIGKRIENLSENSLKVYKDNLERF-DS 93

Query: 106 SGDFDYRKITTKHIRSGVESRKHTPSSA-----IQFLTSMRVLFKWAVRQEYVAINPCLS 160
               ++  +TT+ +R  + +     SS            ++  F++ V +  +  NP   
Sbjct: 94  VIKKNFLDVTTEDVRFYIATVISKNSSVKETYLDNIRRFLKTFFQFLVDEGLIKTNPVTR 153

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220
           ++  +  T    P++  ++++ ++  S     +   E L+ +  R  +     +  +   
Sbjct: 154 IKPIRGNTSEKLPFSNMEIEKLRNACSS-CLEKAVIEILISTAFRRQELAEIKLSDIDFE 212

Query: 221 IFSIKTQKTGTIITVELPD-----GFMKLLAMTPIGKETFFINND---------KQKMNA 266
             SI+T   G  +     +       ++ +      K  F               +  +A
Sbjct: 213 KGSIRTIGKGKKLGYGFLNAKALLALIEYIEKERESKSVFLFIRGKNKRFREKAGEPYDA 272

Query: 267 TQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           +      K    KAGV     H  R+ +AT + D G    ++      + +     YT  
Sbjct: 273 SSLYALIKKIGKKAGVTHVHPHRFRRTAATKALDRGLGLEDVKELLRHEDIKTTLIYT-T 331

Query: 326 ADRIRLGIKNSRRIS 340
            ++ RL  K++R + 
Sbjct: 332 LNKDRLKDKHNRFLD 346


>gi|27497173|gb|AAN64203.1| Int [Photorhabdus luminescens]
          Length = 465

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 48/317 (15%), Positives = 108/317 (34%), Gaps = 38/317 (11%)

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI---IRKSGDF---DYRKITTKHIRSG 122
            TL+  ++ + ++     L+  ++ S+E             G            +  +  
Sbjct: 142 ATLRQHLAAWLEAVQGQGLSERTQESYEERLLPFVTWCEARGVMTAPQVSLPLLESYQRW 201

Query: 123 VESRKHT------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI-RPWT 175
           + S + T      P S    L+ +R  F+W +++ ++  NP  S+  PK +     +   
Sbjct: 202 LRSYRKTNGQPYSPGSQRDRLSVLRQWFRWLLQRHHILYNPVDSLVLPKEEKRLPAQVMN 261

Query: 176 KEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKT 229
           +++     +  +     G + R+  E L  +G+R  +     +  +     +  ++  K 
Sbjct: 262 EDETHTVLAAANIDTLTGLRNRVILEVLWSTGIRRMEVANLLLSEVDFGRGVVLVRQGKG 321

Query: 230 GTIITVELPD----GFMKLLAMTP-----IGKETFFINNDKQKMNATQFSIW----FKAK 276
                V + +       + L++ P           FI    + +     +       + +
Sbjct: 322 NKDRVVPIGEQALHWLSRWLSVRPQLTRRGDSGHLFITRKGRGLARGTLTQIAADSIRKQ 381

Query: 277 ATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-----DRIRL 331
           A  A    + H  R   AT   + GA    + A  G + ++  + YT+ A          
Sbjct: 382 AQLAK-PGACHLFRHSMATQMLENGADTRHIQAILGHEKLETTQIYTRVAIGHLKKVHEQ 440

Query: 332 GIKNSRRISSVVDSDDP 348
                R+      SD+P
Sbjct: 441 THPAERKPEQKTPSDNP 457


>gi|240170588|ref|ZP_04749247.1| site-specific tyrosine recombinase XerC [Mycobacterium kansasii
           ATCC 12478]
          Length = 302

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 43/291 (14%), Positives = 97/291 (33%), Gaps = 28/291 (9%)

Query: 68  PTTLKWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVE 124
           P     ++ E+          + ++R ++      +     D       ++   +R+ + 
Sbjct: 2   PDKHDAILEEFDDYLALQCGRSAHTRRAYLGDLRLLFAFLADRGSALETLSLPLLRAWLA 61

Query: 125 SRKHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
           S        ++  +  ++++    WAVR+  +  +P   ++ PK          ++    
Sbjct: 62  SASGAGVARTTLARRTSAVKAFTAWAVRRGLLTGDPAARLQVPKAHRTLPAVLRQDQALA 121

Query: 182 FKSFWSEGS--------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTI 232
             +    G+        + RL  E L  +G+R S+ C   +  +      ++   K    
Sbjct: 122 AMTAAKSGAEQGDPLALRDRLIVELLYATGIRVSELCGLDIDDVDTGHRVVRVLGKGNKQ 181

Query: 233 ITVELPDGFMKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKA--KATKA 280
            TV       + L            T        +    ++++A Q          A   
Sbjct: 182 RTVPYGRPAAEALQAWLADGRPALVTAESGPALLLGARGRRLDARQARTVVHQTVAAVNG 241

Query: 281 GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIR 330
             +   HG+R  +AT   + GA    +    G  ++   + YT  A +R+R
Sbjct: 242 APDIGPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVNRLR 292


>gi|224543618|ref|ZP_03684157.1| hypothetical protein CATMIT_02828 [Catenibacterium mitsuokai DSM
           15897]
 gi|224523444|gb|EEF92549.1| hypothetical protein CATMIT_02828 [Catenibacterium mitsuokai DSM
           15897]
          Length = 340

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 37/280 (13%), Positives = 95/280 (33%), Gaps = 17/280 (6%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH----T 129
           LI ++  S      +  +   ++S    +  ++ D  +  +TT H+R+ +   +     +
Sbjct: 65  LIDKFIASKEIEGCSKRTTQYYKSTLVMLENRT-DIHFTHMTTDHLRTYLTDYQKINNCS 123

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
             S      ++   F W   + Y+  +P   + + K         + E ++  +      
Sbjct: 124 KVSIDNIRRNLSSFFSWLEEENYILKSPMKRIHKIKTDKVIKETLSDESLECLRDSCD-N 182

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDG----FMKL 244
            +     + L  +G+R  +     ++ +   N   +   K      V             
Sbjct: 183 LRDLAIIDLLASTGMRVGELVNINIEDIDFENRECVVFGKGNKERPVYFDARTKIHLKNY 242

Query: 245 LAMTPIGKETFFINNDKQKMNA---TQFSIWFKAKATKAGVNK-SAHGVRKFSATISADA 300
           L          F++ D +  N    +   I  +    + G+++   H  R+  AT + D 
Sbjct: 243 LKSRTDDNPALFVSLD-KPFNRLQISGVEIRLRNLGRRLGIHRVHPHKFRRTVATRAIDK 301

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
           G    ++ +  G   +D    Y    ++  +   + + ++
Sbjct: 302 GMPIEQVQSLLGHSQIDTTMHYA-MVNQNNVKESHRKFVA 340


>gi|229103030|ref|ZP_04233719.1| DNA integration/recombination/invertion protein [Bacillus cereus
           Rock3-28]
 gi|228680445|gb|EEL34633.1| DNA integration/recombination/invertion protein [Bacillus cereus
           Rock3-28]
          Length = 368

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 46/292 (15%), Positives = 92/292 (31%), Gaps = 35/292 (11%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESY-FDQIIRKSGDFDYRKITTKHIRSGVE 124
               TLK  + E+ K      +  ++   +E      +I   G   + K+    I+    
Sbjct: 60  PSKVTLKDYLLEWLKVKE-MEVDKSTYAGYECIVLKHLIPALGKNTFNKLNVIQIQQFYR 118

Query: 125 SRKHTPSSAIQFL--TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           +     S++   L    +      A+ Q  +  NP     +PK++   I+ WT+E+++ F
Sbjct: 119 NLTGKLSNSRIILIHRVLNTALNQAIAQNLITTNPAKFAAKPKKERTSIQTWTEEEVKTF 178

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--------------NNIFSIKTQK 228
               S+ S+    F   + +G+R  +      Q +               +N      + 
Sbjct: 179 L-LHSQNSRYHTGFILAITTGMRLGEVLGLRWQDVDFDNHTVTINQTLGHDNKIKQSAKT 237

Query: 229 TGTIITVELP----DGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFK 274
           + +  T+ +P    +   +        K  F                  +    F   + 
Sbjct: 238 SSSKRTLPIPIETINALKEHHLFIKKEKLRFGNAYNDSNLIVCTMSGNIVYRDYFRKSYY 297

Query: 275 AKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
               KA V K   H +R   AT+    G     +    G   +      Y+ 
Sbjct: 298 TIIQKANVPKIKFHDLRHTHATLLLKQGVHPKIVSERLGHSNISMTLSVYSH 349


>gi|291457690|ref|ZP_06597080.1| tyrosine recombinase [Bifidobacterium breve DSM 20213]
 gi|291380743|gb|EFE88261.1| tyrosine recombinase [Bifidobacterium breve DSM 20213]
          Length = 339

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 49/305 (16%), Positives = 93/305 (30%), Gaps = 65/305 (21%)

Query: 85  GSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGV--ESRKHTPSSAIQFLTS 139
             L+ N+  ++    +    +    G     +IT   +RS +  ES  H  SS  +   +
Sbjct: 18  RGLSANTLKAYRCDIEACLHLFELRGVVSLNEITLNDLRSWMATESHNHARSSMARKTVA 77

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW------------- 186
           +R  F W      V +NP  ++  P          T+   +Q                  
Sbjct: 78  VRGFFAWGYEHGVVGVNPAATLMTPSIPNTLPTVLTESQAEQLLDCAEHSEALQRKNRDI 137

Query: 187 -----------------------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223
                                  +E  +     E L  +G+R ++     ++ +  +  +
Sbjct: 138 SNDSSADGPHSARGRSADRAREIAERQRDVAILELLYATGIRVAELVSLDIRDVDFSNRT 197

Query: 224 IKTQKTGTIITV-------------------ELPDGFMKLLAMTPIG----KETFFINND 260
           ++    G    V                             A+ P G    +   F+   
Sbjct: 198 VRVTGKGNKQRVVPFGLPAEQALQDWIDYGRPALARLAIEKAVPPNGISSDEGALFLGMR 257

Query: 261 KQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
            +++N           A +AGV + S H +R  +AT   D GA   E+    G  ++   
Sbjct: 258 GKRLNQRVAREIVHKAAREAGVPDISPHALRHSAATHMLDGGADLREVQEMLGHSSLKTT 317

Query: 320 ETYTK 324
           + YT 
Sbjct: 318 QRYTH 322


>gi|254453365|ref|ZP_05066802.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198267771|gb|EDY92041.1| phage integrase [Octadecabacter antarcticus 238]
          Length = 385

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 45/288 (15%), Positives = 89/288 (30%), Gaps = 14/288 (4%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI-IRKSGDF 109
           L G  P  + + +      ++  L  +Y +             +  S  D++ + + G  
Sbjct: 84  LRGGDPVADAVTARTAP--SIADLAEQYYEIHALPKKRKKGAANDRSMLDRLVLPRLGKQ 141

Query: 110 DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
              ++  + I++   S K TP  A + L+ +  +F+ ++       NP   VE+   +  
Sbjct: 142 KVLEVCHRDIQTFHNSLKATPYQANRVLSLLSKMFELSISWGMRGENPAKGVEKFHEEKR 201

Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT- 226
             R  + +++ +  +        +   A    L +G R  +   A       +       
Sbjct: 202 -HRWLSSDELSRLGAALDRHRNQKAANAIRLQLLTGARIGEVLSAQWADFDLDRGVWVKP 260

Query: 227 ---QKTGTIITVELPDGFMKLL----AMTPIGKETFFINNDKQKMNATQFSIWFKAKATK 279
               K      + L    + LL         G    F    K K        W    A  
Sbjct: 261 SHHTKQKRTEHLPLAKAAVALLEKVHEAQRSGSNFVFPGRSKIKPLVDLKKFWRSLIADA 320

Query: 280 AGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
             V+   H  R   A+    +G +   +    G       + Y   AD
Sbjct: 321 DIVDYRIHDNRHTHASQLVSSGMSLAIVGRLLGHTNPMTTQRYAHIAD 368


>gi|329851121|ref|ZP_08265878.1| tyrosine recombinase xerD [Asticcacaulis biprosthecum C19]
 gi|328839967|gb|EGF89539.1| tyrosine recombinase xerD [Asticcacaulis biprosthecum C19]
          Length = 315

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 38/278 (13%), Positives = 91/278 (32%), Gaps = 27/278 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRK-----SGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
            + A  +  ++    D ++        G               +  R    SS  +  ++
Sbjct: 30  RNAARPTLDAYGRDLDDLMATCKVTPQGLLGLSDGDLAGYFQDLSERGLASSSLQRKRSA 89

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA---- 195
           +R  +++ V +     +P   +   K+  +  +  +++++    +     +  +      
Sbjct: 90  VRQFYRFCVAENLTGHDPSRKIAAAKKGLKLPKILSRDEVDALIAAADAIAPNQAVRLEC 149

Query: 196 -FEFLLYSGLRCSDSCRAGVQHL-QNNIFSIKTQKTGTIITVELPDGFMKLLA------- 246
             E    SG+R S+     +  + ++    I   K G    V L       +        
Sbjct: 150 LIEMAYASGMRISELVGLKLDAVARDPACLIIKGKGGVERLVPLNPSARAAIKEYLDIRY 209

Query: 247 -MTPIGKET--FFINNDKQ--KMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISA 298
              P G +   +  ++  +   +   +        A  AG++    S H +R   AT   
Sbjct: 210 TFLPAGDKANPYLFSSRGKEGHLTRRRVGQLLDQAAINAGIDPARVSPHVLRHAFATHLL 269

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKN 335
           + GA    +    G   +   + YT  A +R+R  ++ 
Sbjct: 270 EGGADLRVVQTLLGHADISTTQIYTHVAGERLREVVET 307


>gi|237725482|ref|ZP_04555963.1| integrase [Bacteroides sp. D4]
 gi|229436169|gb|EEO46246.1| integrase [Bacteroides dorei 5_1_36/D4]
          Length = 383

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 66/368 (17%), Positives = 120/368 (32%), Gaps = 53/368 (14%)

Query: 18  HGKIIYY---FRKGHGRRIRLPYPHESTFIPAYMS------ALTGSTPKREYINSPRKKP 68
           +G    Y   +R G      L         PA  +      AL         I     + 
Sbjct: 23  NGNKSIYLDIYRNGKRTYEFLKLYIVPEIDPASRAMNQHNMALANKIKADRIIELTNSEK 82

Query: 69  T----------TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS----GDFDYRKI 114
                       L  L+  Y   A W  L  N + S     + I + +    GD   R +
Sbjct: 83  GVSNATLRGRIKLSELLDLY---ARW--LEDNGKKSSIRGVNSIRKATFQFRGDVPIRML 137

Query: 115 TT----------KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV--- 161
                       ++      +R  + ++A  ++T +  +  WAVR +Y++ NP   +   
Sbjct: 138 DKDYCMAFMNFLRNDYKARTNRTISMTTATGYVTVLSAMLNWAVRNDYLSENPFTHIAAA 197

Query: 162 ERPKRKTEGIRPWTKEDMQQFKS-FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220
           +R  R          +++++  +         + AF F  Y  LR SD        +  +
Sbjct: 198 DRIHRPESKREFLQIDELKKLIATECPTRPAVKQAFLFSCYCALRISDVIGLTWGDIHKD 257

Query: 221 IFSIKT----QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK 276
               +     +KT   I + L    MK L      K+    +      + ++  I     
Sbjct: 258 GDQWRVFTVMEKTNDPIYLPLSKQAMKWLPERGDAKD---EDKVFDLPSESRICIILDKW 314

Query: 277 ATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIK 334
           A  AG+NK  + H  R   AT+        +      G K +   + Y K  D+ +   +
Sbjct: 315 AKAAGINKHVTYHVSRHTFATMMLTLDVDIYTTSKLLGHKNISTTQIYAKIIDQKK--DE 372

Query: 335 NSRRISSV 342
              R++ +
Sbjct: 373 AVNRVNDI 380


>gi|34222780|sp|Q48733|XERC_LACLE RecName: Full=Tyrosine recombinase xerC
 gi|1359910|emb|CAA59018.1| xerC recombinase [Lactobacillus leichmannii]
          Length = 295

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 40/264 (15%), Positives = 101/264 (38%), Gaps = 24/264 (9%)

Query: 85  GSLAVNSRISFESYF---DQIIRKSGDFD-YRKITTKHIRSGVES--RKHTPSSAIQFLT 138
            S +  + ++++       +  +++G F  + +I+ + +   + +  +K   S+  + L+
Sbjct: 15  RSYSPKTVLAYQKDLAAAKKFWQENGGFPGWDQISRRDLEIYLLATGQKLASSTLSRKLS 74

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG----SQPRL 194
           S++  ++   R+  V  +P ++++  + K +    + ++++ Q     ++G     + R 
Sbjct: 75  SLKSFYRLLTRRGLVKADPTVAIQLRRGKKKLPEFFYQDEVGQVIRSLNDGKPLTVRNRA 134

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLA-----MT 248
                  +G+R S+     ++ L   N   +   K      V       K L        
Sbjct: 135 IVALFYATGMRLSELTDLKIKQLDLENGMILVHGKGNKDRYVFFDQESKKYLEEYLQVAR 194

Query: 249 P------IGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADA 300
           P         E  F+N   + +++   +   +    KAG+      H +R   AT   + 
Sbjct: 195 PSLLKNEPDTEAVFLNKLGRPISSRGIAKAVQQIFQKAGLTAGAHPHELRHSFATAMLNN 254

Query: 301 GATAHELMATYGWKTVDQAETYTK 324
           GA    +    G + +   + YT 
Sbjct: 255 GADLRSVQELLGHEDLSTTQIYTH 278


>gi|323937177|gb|EGB33457.1| phage integrase [Escherichia coli E1520]
          Length = 375

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 41/264 (15%), Positives = 84/264 (31%), Gaps = 24/264 (9%)

Query: 73  WL--ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE--SRKH 128
           WL  +  Y+KS          +         +    G    R IT   +         K 
Sbjct: 102 WLPDLQLYKKSP---------QSELSKLNLYVRPFWGKRQLRDITAGELEQYAAGLREKL 152

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF-KSFWS 187
            PS+  + L  +  +   AVR  ++  +P   V   K      R  +  ++ +F  +  +
Sbjct: 153 RPSTVNRILAILSKICSLAVRAGWITHSPMSHVRYLKENNIRYRTLSATEIPRFINAATA 212

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
             +    +    LY+G+R  + C    +  H   +   +   K+G   T  L    + ++
Sbjct: 213 LQTPAADSILLALYTGMRIGEVCTLKWEYWHPDMHQLILPDTKSGHPFTCPLAPPAIAVV 272

Query: 246 AMTPI---GKETFF--INNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISAD 299
                    K   F  + ++ + +   + +  F      A ++    H +R+  AT    
Sbjct: 273 QCQQDLMLSKTYIFPQLTDNARPLAYPRAT--FARICRDANIDNLRMHDLRRTFATRVLQ 330

Query: 300 AGATAHELMATYGWKTVDQAETYT 323
           A              ++     Y 
Sbjct: 331 ATGDIAIASHLLNHHSLTATRRYA 354


>gi|256850237|ref|ZP_05555666.1| integrase-recombinase [Lactobacillus crispatus MV-1A-US]
 gi|262046371|ref|ZP_06019333.1| integrase [Lactobacillus crispatus MV-3A-US]
 gi|256712874|gb|EEU27866.1| integrase-recombinase [Lactobacillus crispatus MV-1A-US]
 gi|260573242|gb|EEX29800.1| integrase [Lactobacillus crispatus MV-3A-US]
          Length = 270

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 87/235 (37%), Gaps = 17/235 (7%)

Query: 107 GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
           G    R+   +     +  RK   SS ++ ++S+   +++  R++ VAI+P   +   + 
Sbjct: 16  GWTKVRERDIQVYLQHLAERKLARSSQLRKMSSLHSFYRFLTRRKLVAIDPTKGITLRRG 75

Query: 167 KTEGIRPWTKEDMQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222
           + +  + + + +++Q             +    FE    +G+R S+     +  L  ++ 
Sbjct: 76  EKKLPQFFYQPELKQVFDSLKGNKPLTMRNLAMFELFYATGMRVSEVSNLTLNQLDLDLQ 135

Query: 223 SIKTQKTGTI-ITVELPDGFMKLL-----AMTP-----IGKETFFINNDKQKMNATQFSI 271
           +I     G     V   D   K L        P       ++  F+NN    + +     
Sbjct: 136 TILVHGKGNKDRYVAFDDKTKKSLIAYLENARPLLLKNDDEQHVFLNNQGTGITSRGIET 195

Query: 272 WFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             +    +AG++     H +R   AT   + GA    +    G  ++   + YT 
Sbjct: 196 VMQKTFNQAGISGKVHPHELRHSFATAMLNNGADLRSVQELLGHSSLSATQIYTH 250


>gi|298253373|ref|ZP_06977165.1| site-specific recombinase XerD [Gardnerella vaginalis 5-1]
 gi|297532768|gb|EFH71654.1| site-specific recombinase XerD [Gardnerella vaginalis 5-1]
          Length = 319

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 37/266 (13%), Positives = 79/266 (29%), Gaps = 22/266 (8%)

Query: 81  SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSM 140
           S    S   +    +  +     +        ++  +     +        +  + L S+
Sbjct: 36  SKKTVSAYASDLQDYTCWLYDERKIKDIATISQLDIESYIRTLNELGLGTRTVARRLASI 95

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-------FKSFWSEGSQPR 193
               ++ +    +  +    V+ PK+        + E++ +       F S  +   +  
Sbjct: 96  HEWHRFMLAHGDIQADVSAQVKAPKQADYLPDVLSIEEVNRVIEAAGNFGSSDAISIRDT 155

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVEL------------PDG 240
              EFL  +G R S++     + +  N   +K T K      V +               
Sbjct: 156 ALLEFLYATGARISEAVGVKFEDIDLNESVVKLTGKGSKQRLVPIGGCAVRALRNYMEKS 215

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISA 298
             +L         T F+N     ++             +A ++K    H +R   AT   
Sbjct: 216 RPELALKGKRELHTIFLNKRGNALSRQSAWAIVTQAGERAKLDKPLHPHTLRHSLATHLI 275

Query: 299 DAGATAHELMATYGWKTVDQAETYTK 324
             GA    +    G  +V   + YT 
Sbjct: 276 AGGADVRTVQELLGHASVTTTQIYTH 301


>gi|258423907|ref|ZP_05686792.1| tyrosine recombinase XerC [Staphylococcus aureus A9635]
 gi|257845936|gb|EEV69965.1| tyrosine recombinase XerC [Staphylococcus aureus A9635]
          Length = 298

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 37/266 (13%), Positives = 93/266 (34%), Gaps = 22/266 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRK-----ITTKHIRSGVESRKHTPSSAIQFLTS 139
            + + ++  S++    Q  +       +         ++  S + S     +S  + +++
Sbjct: 16  RNFSEHTLKSYQDDLIQFNQFLEQEHLQLNTFEYKDARNYLSYLYSNHLKRTSVSRKIST 75

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLA 195
           +R  +++ +  +   INP + +  PK++    + + +E+M+       E +    + R+ 
Sbjct: 76  LRTFYEYWMTLDENIINPFVQLVHPKKEKYLPQFFYEEEMEALFKTVEEDTSKSLRDRVI 135

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVE--------LPDGFMKLL 245
            E L  +G+R S+      Q +    N  ++   K      V         + +      
Sbjct: 136 LELLYATGIRVSELVNIKKQDIDFYANGVTV-LGKGSKERFVPFGAYCRQSIENYLEHFK 194

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATK-AGV-NKSAHGVRKFSATISADAGAT 303
            +     +   +N   + +              + AGV     H +R   AT   + GA 
Sbjct: 195 PIQSCNHDFLIVNMKGEAITERGVRYVLNDIVKRTAGVSEIHPHKLRHTFATHLLNQGAD 254

Query: 304 AHELMATYGWKTVDQAETYTKGADRI 329
              + +  G   +     YT  +++ 
Sbjct: 255 LRTVQSLLGHVNLSTTGKYTHVSNQQ 280


>gi|9635596|ref|NP_061531.1| integrase [Pseudomonas phage D3]
 gi|6166382|gb|AAF04808.1| integrase [Pseudomonas phage D3]
 gi|9885346|gb|AAG01406.1| integrase [Integration vector pVH-2]
          Length = 369

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 57/360 (15%), Positives = 115/360 (31%), Gaps = 34/360 (9%)

Query: 16  TRHGKIIYY--FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK----KPT 69
            R+    ++  F+   G+ +R      S+    Y +A      +R      ++     P 
Sbjct: 4   KRNDSAYWWISFKSATGKLVR-----RSSGTADYSAAKALEQQERAKAWKEKEMGVNPPR 58

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           T + +I  Y + A     +  + +       +        D      +   +       +
Sbjct: 59  TFEEVIIPYLQHARQHQRSYETTVHRIKPLREYFAGRVVNDLGGQDIRGYGAHRLDAGAS 118

Query: 130 PSSAIQFLTSMRVLFKWA-VRQEYVAINPCLSVERPKRKTEGIRPW-TKEDMQQFKSFW- 186
           P++  + L ++           E+   NP    +   R+ EG   W T+ +++       
Sbjct: 119 PATINRELAALSAAINHCNTELEWALPNPVKGRKM--REAEGRDRWLTRAEVEALCRAAR 176

Query: 187 --SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ--KTGTIITVELPDG 240
               G          + +G R  +      + +   N +  ++    K G   ++ + +G
Sbjct: 177 GQKFGPMLEDFIRLAVNTGCRREEMLGLEWRRVDFANRLIYLEASHTKAGKRRSIPINEG 236

Query: 241 FMKLLAM-----TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSA 294
            M  L       +    E  ++            S  FK     A + + + H +R   A
Sbjct: 237 AMAALKRRMAFRSETSPECPWVFARANGDRVISLSAGFKQACQAAKIADFTIHDLRHTCA 296

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSR-----RISSVVDSDDP 348
                AG    ++    G  TV   E Y   A  R+R  +         RIS  V +D+P
Sbjct: 297 AWLVSAGVPLADVRDLLGHSTVAMTERYAHLAPARVRDAVGVLDQVREGRISRSVHADNP 356


>gi|307718588|ref|YP_003874120.1| DNA integration/recombination/invertion protein [Spirochaeta
           thermophila DSM 6192]
 gi|306532313|gb|ADN01847.1| DNA integration/recombination/invertion protein [Spirochaeta
           thermophila DSM 6192]
          Length = 299

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 49/283 (17%), Positives = 100/283 (35%), Gaps = 25/283 (8%)

Query: 74  LISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGV-ESRKHT 129
           L+  YR         +  +  ++    ++          +   ++ +     + + R   
Sbjct: 8   LLRRYRTHLVAELGRSRLTEETYLPLCERFCAWLECRGLEVGTVSRRTCEEFIVDERGEG 67

Query: 130 P--SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ----QFK 183
               +  + ++++R  F++ V +     NP   ++ P+      R   +E+++       
Sbjct: 68  KETRTIAKEMSALRSFFRFLVLEGVRPDNPLEEMDAPRISRTLPRVLEEEEVEILLEAVD 127

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-------- 235
           +   EG + R   E L   GLR S++C   +Q +  +   +K +  G    +        
Sbjct: 128 TAPPEGMRDRCLLEVLYSCGLRVSEACGLDLQDIFLSEGFVKVRGKGEKERLVPFGKEAG 187

Query: 236 -----ELPDGFMKLLAMTPIGKE-TFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGV 289
                 L +    L A  P  +E   F+N   ++++     I  K     +GV+   H  
Sbjct: 188 HWMRRYLSEARPVLAARRPGSREQAVFLNRWGRRLSRKGAWIRLKRLVAASGVDAKLHTF 247

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           R   AT     GA   E+    G   +   + YT   D  RL 
Sbjct: 248 RHTCATHLLHGGANLREVQEFLGHADISTTQIYTH-VDARRLA 289


>gi|253578208|ref|ZP_04855480.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850526|gb|EES78484.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 317

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 33/285 (11%), Positives = 88/285 (30%), Gaps = 26/285 (9%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           L+  +  Y +   +   L   +  ++    +Q        +  K   +   + +  +K+ 
Sbjct: 15  LQDKLVSYLEYCTYRKELDQKTVKAYRIDLNQYFTFVACEEPDKEKIEEYITELH-KKYK 73

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQQFKSF--- 185
             +  + + S++  + +    E +  +P   ++ + K      R   +E+++   +    
Sbjct: 74  QKTVKRKIASVKAYYSYLEENELIKESPFRKIKVKFKENLILPRIIPREEIEHLLNHMYG 133

Query: 186 ---------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---- 232
                    +    +     E    +G R  +      +++  N   I+    G      
Sbjct: 134 CLQQASETVYKYCLRDVAVIELFFATGARVYEISNIRAENVNLNTGLIQLMGKGAKERYV 193

Query: 233 -----ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--S 285
                  + +   +             FF+N    +       +  K    +AG+ +  +
Sbjct: 194 QIGSTSVLNILRKYYAENRAAIKKSGYFFVNGRGNRYTEQSIRLMLKKYTAQAGIERNIT 253

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
            H  R   AT   + G     +    G  ++   + Y   A R +
Sbjct: 254 PHMFRHSFATYLIEEGVDISCVQRILGHSSIKTTQIYIHVAARKQ 298


>gi|146297702|ref|YP_001181473.1| phage integrase family protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145411278|gb|ABP68282.1| phage integrase family protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 327

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 54/308 (17%), Positives = 100/308 (32%), Gaps = 51/308 (16%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTP- 130
           WL   Y+K     +L  ++   +ES  +  I+   G +  + +  +H+++   S+  +  
Sbjct: 10  WLWE-YKK----QTLRPSTFQDYESLINNHIVPSIGHYKLKDLRPEHLQALYNSKHESGL 64

Query: 131 --SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE-GIRPWTKEDMQQFKSFWS 187
             S+       +      A++   V  N   +   PK KT+  IR  T E+ ++F +   
Sbjct: 65  SLSTIKHIHVILHSALDQALKNGLVVRNVSEATTLPKAKTKKEIRVLTLEEQKRFVAAL- 123

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQ------------------ 227
           EG + + AF   L SG+R  +         +L+    +IK                    
Sbjct: 124 EGERLKPAFLLALASGVRLGELLALKWDCVNLKEGTITIKRSLRRIKTYDKSLPTKTMLA 183

Query: 228 ----KTGTII-TVELPD----GFMKLLAMTPIGK----------ETFFINNDKQKMNATQ 268
               KT   I T+ +P        +        K             F       +    
Sbjct: 184 FQEPKTAAGIRTIPVPPVILEELKEHRKRQLEEKLKAGSLYEDNNLVFATELGTPIEPRN 243

Query: 269 FSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGAD 327
           F   F     KA ++ + H +R   AT   +A      +    G   +      Y+    
Sbjct: 244 FLRVFYRIIEKANLDINFHALRHTYATRLLEANEHPKVVQELLGHNDISTTLNIYSHVMP 303

Query: 328 RIRLGIKN 335
            I+     
Sbjct: 304 EIKKAAAM 311


>gi|168698681|ref|ZP_02730958.1| phage integrase family protein [Gemmata obscuriglobus UQM 2246]
          Length = 303

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 48/275 (17%), Positives = 90/275 (32%), Gaps = 25/275 (9%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVESR 126
             L + +  +  +   A  +R +F     +      +     F   ++T + +    E  
Sbjct: 19  AALFTTFLDAHDF---ASGTRKAFTLDIKKFAVWFAEVNREPFRVGRVTMRDVTDFREHL 75

Query: 127 KHTPSSA----IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           +     A     + L ++R  F W   Q +VA NP + V+  +R     +   ++ +++ 
Sbjct: 76  RREKGQAVSTVNRALVAVRRYFGWLAEQGHVASNPAVGVKELRRVQLAPKGLQRDQVRKL 135

Query: 183 KSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVE 236
                     R    F  LLY+G R  D     +Q L    ++     +  K G   +V 
Sbjct: 136 LREVELRQDVRASAVFHLLLYTGCRIGDLVNLKLQDLMLTERSGTVVFRLGKGGKQRSVP 195

Query: 237 LPDGFMKLLAM-----TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRK 291
           LP    K +        P+ ++  FI      +            +   GV    H  R 
Sbjct: 196 LPLPARKSIQAYLDTRPPVKEQIVFIGERG-PLTDRGVRAMCDKYSALIGVKLHPHLFRH 254

Query: 292 FSA-TISADAGATAHELMATYGWKTVDQAETYTKG 325
             A    AD       L    G + ++    Y + 
Sbjct: 255 TMAHQFLADNENDLVALAQLLGHENLNTTARYARR 289


>gi|331271115|ref|YP_004385824.1| site specific tyrosine recombinase XerC [Clostridium botulinum
           BKT015925]
 gi|329127610|gb|AEB77552.1| site specific tyrosine recombinase XerC [Clostridium botulinum
           BKT015925]
          Length = 334

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 86/221 (38%), Gaps = 20/221 (9%)

Query: 126 RKHTPSSAIQFLTSMRVLFKWAV-RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
           R ++ ++  + +++++  FK+   + + +  N    +E+PK +       T E+ ++  S
Sbjct: 98  RNNSSNTRARKVSTLKAFFKYLYGKIKVLDYNIAEELEKPKLEKRNPIYLTLEESRKLLS 157

Query: 185 FWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
                ++ R        L  GLR S+ C   +  ++ +  ++   K     TV L    M
Sbjct: 158 VIDGKNKERDYCILNIFLNCGLRISELCSIQISKIKEDTLTVI-GKGNKERTVYLNKACM 216

Query: 243 KLL------------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAH 287
             +             +    K+  F+N +   ++        K    KAG++    + H
Sbjct: 217 DSITDYLKVRNSCKARVPLEDKDILFLNKNYGHISKRSVEKLVKKYVEKAGLDTTKYTPH 276

Query: 288 GVRKFSATISAD-AGATAHELMATYGWKTVDQAETYTKGAD 327
            +R  +AT+     G    +L    G +++   + YT   +
Sbjct: 277 KLRHTAATLMFKYGGVDIRKLQLILGHESISTTQIYTHVDN 317


>gi|254293147|ref|YP_003059170.1| integrase family protein [Hirschia baltica ATCC 49814]
 gi|254041678|gb|ACT58473.1| integrase family protein [Hirschia baltica ATCC 49814]
          Length = 308

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 46/292 (15%), Positives = 94/292 (32%), Gaps = 33/292 (11%)

Query: 85  GSLAVNSRISFESYF----DQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSM 140
              + N+  ++        + +  K G               ++SR    S+A + L+S+
Sbjct: 21  RGASQNTLDAYRRDLSDASEFLADKGGLVGANSENLSAYMRDLDSRGMAKSTAARRLSSL 80

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLAF 196
           +  FK+ + +     +P   ++ P+         +KE++    +          + R   
Sbjct: 81  KSFFKFELEEGEREDDPTSRLDGPQIIRNIPDVLSKEEVVALINAADGDEPSDIRDRCIL 140

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFS--IKTQKTGTIITVELPDGFMKLLAMTPIGKET 254
           E L  +GLR S++C   +  L     +  I   K        L       L      +E 
Sbjct: 141 ELLYSAGLRASEACELPMSSLPRGKDTALIIRGKGDKDRLTPLGKPARDALEQWFSVREK 200

Query: 255 FFINNDKQK---------------MNATQFSIWFKAKATKAGV---NKSAHGVRKFSATI 296
           F   N+ +K                   + +   +  ATKA +     + H +R   AT 
Sbjct: 201 FLPKNETRKIADKYVFPSRGKTGHFTRRRLAQILENLATKAAISPKRVTPHALRHAFATH 260

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
               GA    +    G   +   + YT       +  +  + + +     +P
Sbjct: 261 LLSGGADLRAVQMLLGHADISTTQIYTHV-----MTDELQKLLEAAHPLSNP 307


>gi|261368880|ref|ZP_05981763.1| site-specific recombinase, phage integrase family [Subdoligranulum
           variabile DSM 15176]
 gi|282568975|gb|EFB74510.1| site-specific recombinase, phage integrase family [Subdoligranulum
           variabile DSM 15176]
          Length = 391

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 52/333 (15%), Positives = 104/333 (31%), Gaps = 47/333 (14%)

Query: 57  KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT 116
           +  +   P     TL      + +      LA ++    +    +I+   G +    +  
Sbjct: 59  EVRHDPQPVNHAMTLAAYTEHWLRDIAPDKLAASTYSRDQQDIRRILPALGHYKLTDLRK 118

Query: 117 KHIRSGVESRKHTP----------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
           + IR+  E+ +  P           S      ++  +   AV + Y+  NP   V +PK 
Sbjct: 119 ETIRAFYEAMRSEPKLTDGQPLSERSVEGLHNTLCSILSGAVDEGYLTHNPAWRVYKPKG 178

Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQPR-LAFEFLLYSGLRCSDSCRAGVQHLQ------- 218
             +      +E +Q+  +     S    + F+ +L +G+R  ++C      +        
Sbjct: 179 VRKERPVADEETVQKMIAALETQSMKYEVYFKLVLATGMRRGEACGLRWSDIDWRHRTIH 238

Query: 219 ---------NNIFSIKTQKTGTI-ITVELPDGFMKLLAMTP---------------IGKE 253
                          K  KT +    V +     KLL                     ++
Sbjct: 239 VQRTVVKLSGQKIFTKEPKTASGNRRVYISKEMCKLLKAWKQECAWQMEQAEGQTLTEED 298

Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATY 311
             F       M  T F+  FK    + G+  N S H +R  +A++    G     +    
Sbjct: 299 YLFRQPSGDPMVPTTFTFRFKKILKENGLPQNLSVHSLRHTNASLLIAQGVDVRTVAGLL 358

Query: 312 GWKTVDQA-ETYTKGADR-IRLGIKNSRRISSV 342
           G        + Y    D+  R   +   ++  +
Sbjct: 359 GHSQPSTTLDIYAHAFDKTKREAQEKLGKVMRL 391


>gi|226945661|ref|YP_002800734.1| phage integrase [Azotobacter vinelandii DJ]
 gi|226720588|gb|ACO79759.1| Phage integrase [Azotobacter vinelandii DJ]
          Length = 400

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 62/328 (18%), Positives = 109/328 (33%), Gaps = 28/328 (8%)

Query: 44  IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-I 102
           +     A               +K  T+K   + + +         +++  +    D+ I
Sbjct: 73  MAQEWLAEVRRGGDPSAAKVAARKAPTMKEYCTTFMEDYSKQRNKPSTQRGYRGVIDRNI 132

Query: 103 IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA--INPCLS 160
           I   G    + +    + + ++   H P+ A +    +R +F  A          NPC  
Sbjct: 133 IPILGRMKVQDVKRPDVAALMKKLAHKPAEANRTFGVLRKMFNLAEVWGLRPDGTNPCRH 192

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSF----------WSEGSQPRLAFEFLLYSGLRCSDSC 210
           V       E       E ++ F+            +      RL FEF      R S+ C
Sbjct: 193 VPMFPPGKETRLIVDDELVRIFRHLEHMEAEGLENYVIPLAIRLQFEFA----ARRSEIC 248

Query: 211 RAGVQHLQNN--IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI----NNDKQKM 264
                 +            KTG  I+  + +   +LL+  P  +   ++    N+  + +
Sbjct: 249 PLEWDWVDLEKRRVVWPDSKTGG-ISKPMSEEAYRLLSRAPRREGCPYVLPSPNDPTRHL 307

Query: 265 NATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
              +    +K     AGV     HG+R  S T  A++G      MA  G KTV     Y 
Sbjct: 308 TFGEHYGGWKRVLRAAGVPHVGTHGIRHRSTTDIANSGVPTKVGMALTGHKTVAMFMHYV 367

Query: 324 KGADR-IRLGIK--NSRRISSVVDSDDP 348
              D+ +R   +   SRR +    S  P
Sbjct: 368 HTEDKPVRDAAELVASRRQAITGGSPRP 395


>gi|330994896|ref|ZP_08318818.1| Tyrosine recombinase xerC [Gluconacetobacter sp. SXCC-1]
 gi|329758157|gb|EGG74679.1| Tyrosine recombinase xerC [Gluconacetobacter sp. SXCC-1]
          Length = 291

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 54/285 (18%), Positives = 107/285 (37%), Gaps = 18/285 (6%)

Query: 52  TGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY 111
               P  E   +P+     L  LI  +       +   N+R ++ES     +   G    
Sbjct: 6   RAMPPTDEAQKAPQNSADNL--LIKTWL-----HNRGENTRRAYESDVRAFLAHVGKT-L 57

Query: 112 RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
            ++T   +++  +S     ++  + L +++ L  +    E +  +   +V  PK +    
Sbjct: 58  PEVTAPDLQNWFDSLTGADATRRRKLMAVKSLLSYGAAMEMLPRDVGPAVRIPKGRDSLH 117

Query: 172 -RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN---NIFSIKTQ 227
            R  T+E ++      ++  + R+    L  +GLR S+ C    + L+       +    
Sbjct: 118 ERILTQEQVRALIDGETDP-RRRVMLRVLYATGLRISELCAVRWKDLKRRQQGGVAHVFG 176

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKET---FFINNDKQKMNATQFSIWFKAKATKAGVNK 284
           K G   TVE+P    K +    +           +D   ++        K  A +AG+ +
Sbjct: 177 KGGKNRTVEIPAKVWKEIVALRVDSRPEAPMVPGHDGGPLSVDAVHRSVKRAAKRAGLPE 236

Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
             SAH +R   A+   D GA AH +    G  ++     Y+   +
Sbjct: 237 QVSAHWLRHAYASHMQDNGAPAHVVQQQLGHTSLATTTRYSHARE 281


>gi|229096923|ref|ZP_04227892.1| DNA integration/recombination/invertion protein [Bacillus cereus
           Rock3-29]
 gi|228686533|gb|EEL40442.1| DNA integration/recombination/invertion protein [Bacillus cereus
           Rock3-29]
          Length = 368

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 47/292 (16%), Positives = 92/292 (31%), Gaps = 35/292 (11%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESY-FDQIIRKSGDFDYRKITTKHIRSGVE 124
               TLK  + E+ K      +  ++   +E      +I   G   + K+    I+    
Sbjct: 60  PSKVTLKDYLLEWLKVKE-MEVDKSTYAGYECIVLKHLIPALGKNTFNKLNVIQIQQFYR 118

Query: 125 SRKHTPSSAIQFL--TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           +     S++   L    +      A+ Q  +  NP     +PK++   I+ WT+E+++ F
Sbjct: 119 NLTGKLSNSRIILIHRVLNTALNQAIAQNLITTNPAKFAAKPKKERTSIQTWTEEEVKTF 178

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--------------NNIFSIKTQK 228
               S+ S+    F   + +G+R  +      Q +               +N      + 
Sbjct: 179 L-LHSQNSRYHTGFILAITTGMRLGEVLGLRWQDVDFDNHTVTINQTLGHDNKIKQSAKT 237

Query: 229 TGTIITVELP----DGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFK 274
           + +  T+ +P    +   K        K  F                  +    F   + 
Sbjct: 238 SSSKRTLPIPIETINALKKHHLFIKKEKLRFGNAYNDSNLIVCTMSGNIVYRDYFRKSYY 297

Query: 275 AKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
               KA V K   H +R   AT+    G     +    G   +      Y+ 
Sbjct: 298 TIIQKANVPKIKFHDLRHTHATLLLKQGVHPKIVSERLGHSNISMTLSVYSH 349


>gi|94972396|ref|YP_595615.1| integrase [Lawsonia intracellularis PHE/MN1-00]
 gi|94731933|emb|CAJ53922.1| Integrase [Lawsonia intracellularis PHE/MN1-00]
          Length = 383

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 64/367 (17%), Positives = 128/367 (34%), Gaps = 38/367 (10%)

Query: 12  TKERTRHG--KIIY--YFRKGHGRRIRLPYPHESTFIPAYMS-----------ALTGSTP 56
            +   +HG  K  Y  Y R G  + I  P   ES+ + A  +            L+    
Sbjct: 19  QRRLDKHGVEKTFYILYRRCGEKKLIEEPVGRESSGMTAATANNIRGLRAIGKELSNVEK 78

Query: 57  KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF----DYR 112
           +++     + +  TL+ +  +Y+        ++   IS   Y   ++ KS D     D  
Sbjct: 79  RKKEKEKQQNQKVTLQTIWDKYQLIYSEKK-SLKQDISRVKYLSDLMHKSPDILTTNDID 137

Query: 113 KITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170
            +  K   +       +  P+S    L  ++ L  + +++        L ++ PK   + 
Sbjct: 138 TLRKKLTLTKSSKGGASLSPASIKHILVLLKRLINFGIQRNLCIKPQNLYIDMPKVDNQK 197

Query: 171 IRPWTKEDMQQFK-SFWSEGSQPRLAFE-FLLYSGLRCSDSCRAGVQH--LQNNIFSIKT 226
               +K  ++    +  +E +Q  +AF    L +G+R S            +NNI ++  
Sbjct: 198 TEILSKNQLKNLLLALDAEPNQSDVAFIRLALVTGMRKSALLALKWSDCDFENNIITLSG 257

Query: 227 --QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284
              K G    + + +    +L   P G   F           T      K    KA + K
Sbjct: 258 NYAKKGKTDYIPMNNSAKSILLSIPKGNSDFIFATRNGTKRTTYNQRLIKRIKEKAKLPK 317

Query: 285 SA---HGVRKFSATISADAGA-TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
                HG+R   A+  A +G    + +      +T    + Y        L     ++ +
Sbjct: 318 DFRPLHGLRHNFASRLASSGKVDLYTIQRLLTHETPAMTQRYAH------LHNDALKKAA 371

Query: 341 SVVDSDD 347
           +++D + 
Sbjct: 372 AIIDDEF 378


>gi|320104451|ref|YP_004180042.1| tyrosine recombinase XerD subunit [Isosphaera pallida ATCC 43644]
 gi|319751733|gb|ADV63493.1| tyrosine recombinase XerD subunit [Isosphaera pallida ATCC 43644]
          Length = 325

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 42/277 (15%), Positives = 92/277 (33%), Gaps = 26/277 (9%)

Query: 86  SLAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVE---SRKHTPSSAIQFL 137
            L+  +  ++     +       R++       +    + + V+        P++  + L
Sbjct: 45  RLSPGTLAAYRGDLVKFTRWRAAREAVPRPIAALQVGDLEAYVDYLHGLGLAPATVCRHL 104

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPR 193
           +S+   F++   +  ++ N    V  P            + + Q     +E    G + R
Sbjct: 105 SSLSSFFRYLAIEGRLSENRVELVTAPSLWERLPTVIGPQAVSQLLEAPAEWGWKGRRDR 164

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-ELPDGFMKLLAM----- 247
              E L  +G R S+     ++ L  +  S +    G    +  L     + L       
Sbjct: 165 AILETLYATGCRVSEVAGLTIRDLDLDSASARVVGKGDRERIVPLGQPAQRALRRWLEER 224

Query: 248 -----TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
                        F++   + ++        KA A  AG++   S H +R   AT     
Sbjct: 225 PRRVQRRPQVVAVFVSRTGRPLDRGSIWRIVKASARLAGLSATVSPHTLRHSFATHLLAG 284

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
           GA    +    G  ++   + YT+  +  RL   +++
Sbjct: 285 GADLRAVQELLGHASISTTQIYTR-VEVSRLLEVHAK 320


>gi|53712683|ref|YP_098675.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|52215548|dbj|BAD48141.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
          Length = 383

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 39/297 (13%), Positives = 94/297 (31%), Gaps = 22/297 (7%)

Query: 41  STFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD 100
             F   Y         +    +   K+  TL      Y +       + ++  ++ +YF 
Sbjct: 77  PDFYDRYSPHAYIDYSRVYVRHPKPKREYTLP---KGYLELLEQKRYSPSTVKTYRAYFS 133

Query: 101 QIIRKSGDFDYRKITTKHIRSGV----ESRKHTPSSAIQFLTSMRVLFKWAV--RQEYVA 154
             +      +  ++    I   +      +K + S     + +++  ++     +++Y  
Sbjct: 134 DFMEYHKGRNIDRLKVPDINKYILYLVNEKKISVSQQNMRINAIKFYYEQVKGGKRQYYG 193

Query: 155 INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGV 214
                 + R K         +K ++++  +  S   +       +  +GLR S+      
Sbjct: 194 -----GITRAKEYKSLPEVLSKNEIKRILAQIS-NIKHHCMISLVYSAGLRRSELLNLTP 247

Query: 215 QHLQNNIFSIKTQKTGTI-----ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF 269
           Q + +   S++    G       ++ +L +            K  F      ++ +A+  
Sbjct: 248 QDINSETMSVRIMGKGKKCRYSLLSPKLLEELRHYFREYRPQKWLFEGETPGEQYSASAL 307

Query: 270 SIWFKAKATKAGVNKSAHG--VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
               K  A +AG+    H   +R   AT   + G   H +    G   +     Y  
Sbjct: 308 VKVLKEAAHRAGIKHRVHVHMLRHSFATHLLEQGTDLHTIQELLGHNDIKTTTIYLH 364


>gi|327483029|gb|AEA77436.1| Tyrosine recombinase XerC [Vibrio cholerae LMA3894-4]
          Length = 267

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 34/237 (14%), Positives = 78/237 (32%), Gaps = 17/237 (7%)

Query: 105 KSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV 161
           + G   + ++ +  +R  V   K      SS    L+S+R    + + +  +  NP   V
Sbjct: 7   QVGLTHWTQLDSAWVRQLVMQGKRQGMKASSIATRLSSLRSFLDFLILRGELEANPAKGV 66

Query: 162 ERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218
             P+++    +    ++M Q            + R   E +  +GLR ++     V+ + 
Sbjct: 67  SAPRKQRTLPKNLDVDEMAQLLEVTDDDPLSIRDRAIMELMYGAGLRLAELVSIDVKDVN 126

Query: 219 NNIFSIKTQKTGTI---ITV------ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF 269
            +   I+    G     +         +         +    +   F++    +++    
Sbjct: 127 LSEGEIRVIGKGNKERKVWFAGQAQEWVGKWLKLRSQLADSAETALFVSKLGTRISHRSV 186

Query: 270 SIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
                    K  V  + S H +R   AT   ++      +    G + +   + YT 
Sbjct: 187 QKRMAEWGQKQAVASHISPHKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTH 243


>gi|317051479|ref|YP_004112595.1| integrase family protein [Desulfurispirillum indicum S5]
 gi|316946563|gb|ADU66039.1| integrase family protein [Desulfurispirillum indicum S5]
          Length = 303

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 43/261 (16%), Positives = 91/261 (34%), Gaps = 24/261 (9%)

Query: 88  AVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKH--TPSSAIQFLTSMRV 142
           +  +   +     ++       G  D++++T   +R+ +  R    +  +    L +++ 
Sbjct: 22  SPGTISKYSQELGRLAEHLYEQGIHDWQEVTHLELRAYLYQRAGNLSKHTFSTVLATLKS 81

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPW---TKEDMQQFKSFWSE-----GSQPRL 194
            F++ VR+E    NP   +  P+R  +   P    ++   +  +   S        + R 
Sbjct: 82  FFRFTVREEITHANPTTKLSFPRRSPQDKLPQYVNSEAQSEFLQQLLSLKRNFTNDRNRS 141

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAM------ 247
                L +G+R S+ C     ++     +   T+K G    + +    +K+L        
Sbjct: 142 IIFTFLMTGMRTSELCSLKRSNVSAGTQTFIITRKGGKQQVLPMATELVKILDTYWTPWY 201

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATK-AGVNKS---AHGVRKFSATISADAGAT 303
             I  E +F     Q M           +  +   ++ +   AH +R   AT      A 
Sbjct: 202 DAIPSEYYFCTKQGQPMTPRTIWHLVSRQLQRVDTLSCTKQGAHVLRHTFATNLVRRKAN 261

Query: 304 AHELMATYGWKTVDQAETYTK 324
             E+    G   V   + YT 
Sbjct: 262 LIEIQNLLGHADVRMTQIYTH 282


>gi|255003412|ref|ZP_05278376.1| integrase/recombinase ripx (xerC) [Anaplasma marginale str. Puerto
           Rico]
          Length = 312

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 35/270 (12%), Positives = 89/270 (32%), Gaps = 32/270 (11%)

Query: 85  GSLAVNSRISFESYFDQI---------IRKSGDFDYRKITTKHIRSGVESR----KHTPS 131
              + N+  ++E                R     + +++ +   RS +  R    K + S
Sbjct: 21  RRYSPNTVAAYERDIMDFYRSVCGEPCERSVSLQEVQELRSAEFRSWLADRFKQGKQSAS 80

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKSFWS 187
           +A + ++ +R  F++   +  +  +   ++ +P  +    +   +  M    ++ +    
Sbjct: 81  NA-RAISVVRSFFRYLHHKCGMKSSVVFNISKPIVRRSLPKVLEEPQMRKVMEEPEDLHW 139

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA- 246
              +       L   GLR S++       L+ +   +   K      + +      ++  
Sbjct: 140 THRRDLAVSALLYGCGLRISEAVNIKFCDLRQDELRV-LGKGSKERVIPILPWVRCIIDE 198

Query: 247 ----------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSA 294
                           E  F+     +++ T F+   K    + G+ ++   H +R   A
Sbjct: 199 YVASCPHQRVHGASSTEYVFVGLRGGRLSRTYFAYRMKGLRRRIGLPETTTPHTLRHSFA 258

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324
           T     GA    +    G  ++   + YT 
Sbjct: 259 THLFLEGADIRVVQELLGHASLATTQVYTH 288


>gi|225163580|ref|ZP_03725889.1| tyrosine recombinase XerD [Opitutaceae bacterium TAV2]
 gi|224801815|gb|EEG20102.1| tyrosine recombinase XerD [Opitutaceae bacterium TAV2]
          Length = 342

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 45/282 (15%), Positives = 97/282 (34%), Gaps = 30/282 (10%)

Query: 85  GSLAVNSRISFESYFDQ----IIRKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFL 137
              + ++  ++ES   Q    + R+    D+R +T   +   +   +   ++ +S  + L
Sbjct: 54  RGRSDHTVEAYESDLTQCATFLQRQKKLADWRAVTGAAVTDWLYSLDGDDYSVASLARKL 113

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS--------FWSEG 189
           +++R+  +  VR++    +    ++ PK           E++ +  +             
Sbjct: 114 SALRMFARHLVREQTRPDDFTELLQGPKLVRRVPGTLNAEEVARLLAAPGGGGGGGGPHA 173

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMT 248
            + R   E    SGLR S+     +Q +      ++   K      V +     + LA  
Sbjct: 174 LRDRAILELFYSSGLRVSELSGLLLQQVDLENGMLRVFGKGAKERVVPVGSKAREALATY 233

Query: 249 PIGKET-----------FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSAT 295
                             F++     ++     +  K     AG+ K    H +R   AT
Sbjct: 234 LTAARHHFVKEKKTGSQLFLSERGTAISRKMLWVLVKKYTKLAGITKPVKPHLLRHSFAT 293

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
                GA    +    G  T+   + YT   +  RL  +++R
Sbjct: 294 HLLSGGADLRAIQEMLGHATIGTTQIYT-AVEERRLLDQHAR 334


>gi|158320856|ref|YP_001513363.1| integrase family protein [Alkaliphilus oremlandii OhILAs]
 gi|158141055|gb|ABW19367.1| integrase family protein [Alkaliphilus oremlandii OhILAs]
          Length = 312

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 44/288 (15%), Positives = 86/288 (29%), Gaps = 31/288 (10%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVESR 126
           TL+     +            +  ++E          G+    +IT    K  +  + S+
Sbjct: 3   TLQNAKELFLMENQLKGNTEKTIQNYERMITYFQNFIGNKAMEEITLFDVKQYQLYLSSK 62

Query: 127 KHTPSSAIQFLTS------------MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
           K       +   +            +RV   WA  +  +  +    ++ PK   + I   
Sbjct: 63  KAEFKFTDKIDRTLSKKTIQTYTRQIRVFLNWAYAESLLKEDIGSKIKLPKAPKKVIEIL 122

Query: 175 TKEDMQQFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQK 228
           + E+++            G + +     +L SGLR  +     +   H   NI  +   K
Sbjct: 123 SDEEIELLYKCINDNTEFGLRNKCMISLMLDSGLRREEVITLDLDCIHFTQNIIKVH-GK 181

Query: 229 TGTIITVELP--------DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280
                 + L                 M        FI+ +K  +      +       + 
Sbjct: 182 GEKERIIPLGVYTKKLLFKYLNGYRPMPSYPTNRVFISQEKVPVTMDVMKMLMLRLKKRT 241

Query: 281 GVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           G+ +   H +R   AT    AG  A  L    G  +++    Y+  A 
Sbjct: 242 GIQRLKPHLLRHTFATKYLIAGGDAFSLQMILGHTSLEMTRMYSHLAS 289


>gi|160890772|ref|ZP_02071775.1| hypothetical protein BACUNI_03217 [Bacteroides uniformis ATCC 8492]
 gi|156859771|gb|EDO53202.1| hypothetical protein BACUNI_03217 [Bacteroides uniformis ATCC 8492]
          Length = 376

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 56/293 (19%), Positives = 100/293 (34%), Gaps = 21/293 (7%)

Query: 46  AY--MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII 103
           AY   SAL  + PK+    SP   P         Y ++      + ++  ++ +YF +  
Sbjct: 72  AYIDYSALKNTQPKKSGKTSPAIPPG--------YAETLRQLRYSEHTVRAYTTYFKEFQ 123

Query: 104 RKSGDFDYRKITTKHIRSGVESRKHTP--SSAIQFLTSMRVLFKWAVRQEYVAINPCLSV 161
           +     + R I  + I + +     T   SS  Q L    + F +           C  V
Sbjct: 124 QYFAGRNLRYIRLEEINAYIVHLIDTRGISSCQQNLRINSIKFYFEKVLGLERK--CYEV 181

Query: 162 ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--N 219
           +R KR+       +KE+++          +    F  L  +GLR S+        +    
Sbjct: 182 KRAKRERTLPDVLSKEEIKSILDATGPDIRLFCMFSLLYSAGLRISELLDLKPHDINVSR 241

Query: 220 NIFSIKTQKTGTIITVELPDGFMKLL---AMTPIGKETFFINNDKQKMNATQFSIWFKAK 276
           ++  ++  K        L    ++ L   A     +E  F     +    +  S   K  
Sbjct: 242 SLIRVRQGKGRKDRYTLLSKPLVRKLTEYAKLYKPQEWLFERYKGEPFTESIVSKKLKEA 301

Query: 277 ATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           A +AG+ K    H +R   AT   + G     +    G   +   E Y   +D
Sbjct: 302 AKEAGITKRVYPHLLRHSFATHLIEQGTDLKIVKELLGHNQLKTTEMYVHISD 354


>gi|159046171|ref|YP_001541843.1| integrase family protein [Dinoroseobacter shibae DFL 12]
 gi|159046203|ref|YP_001541875.1| integrase family protein [Dinoroseobacter shibae DFL 12]
 gi|157913930|gb|ABV95362.1| phage integrase [Dinoroseobacter shibae DFL 12]
 gi|157913962|gb|ABV95394.1| phage integrase [Dinoroseobacter shibae DFL 12]
          Length = 290

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 45/266 (16%), Positives = 82/266 (30%), Gaps = 19/266 (7%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           L   + +      L   ++  +           G       T + +R+     K     A
Sbjct: 9   LRRRFIEDMRIKGLQPKTQTMYLRAMRDFTGFLGHSPDSA-TPEELRAFQLDMKEKGVGA 67

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERP----KRKTEGIRPWTKEDMQQFKSFWS-E 188
             F   + VL  +     Y    P   ++R     +   +     + E++ +        
Sbjct: 68  PTFNNRLTVLSFF-----YATTCPRPEMKRHMRYQRAAKKIPVVLSAEEVTRILEAAPGP 122

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLA 246
           G + R AF      GLR S+     +  + ++   I+    K      V L    + LL 
Sbjct: 123 GLRYRAAFSVAYGGGLRASEVTHLKIGDIDSDRMLIRIDQGKGRKDRHVMLSPSLLVLLR 182

Query: 247 ---MTPIGKETFFINNDK-QKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
                       F   ++   ++  QF+  F      A + K  S H +R   AT   + 
Sbjct: 183 DYYREARPAGWLFPGRNRVDPISTRQFNRAFGVACDFAEIKKRVSPHTLRHSFATHLLEG 242

Query: 301 GATAHELMATYGWKTVDQAETYTKGA 326
           G     +    G   ++    YTK A
Sbjct: 243 GTDIRVIQVLLGHAKLETTTIYTKVA 268


>gi|260063566|ref|YP_003196646.1| putative site-specific recombinase [Robiginitalea biformata
           HTCC2501]
 gi|88783010|gb|EAR14184.1| putative site-specific recombinase [Robiginitalea biformata
           HTCC2501]
          Length = 297

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 40/264 (15%), Positives = 91/264 (34%), Gaps = 24/264 (9%)

Query: 85  GSLAVNSRISFESYFDQI----IRKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFL 137
              A ++  ++ +  D        + G+F         IRS +           S  + +
Sbjct: 14  KKYAAHTVKAYLADLDAFSEYCREEQGEFALADQPYPVIRSWIIHLMESGLNNRSVNRKV 73

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-----EGSQP 192
            S++  +K+ +RQ  +  +P  + +  K       P+++ +M+     W      E  + 
Sbjct: 74  ASLKSYYKYQLRQGRIDASPLAAHKPLKIPRRVEIPFSESEMEGLLGEWEPSEGYEAHRD 133

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAM---- 247
           +L  E L  +G+R ++     +  +     +++ T K      + L  G ++ +      
Sbjct: 134 KLVVELLYTTGMRRAELIGLKLGDVDLEQGTLRVTGKRDKERILPLLPGIVREIRAYLEL 193

Query: 248 -----TPIGKETFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSAHGVRKFSATISADA 300
                    +   F+ +   K+                 A   +S H +R   AT   + 
Sbjct: 194 RGAHFKSGSEPHLFLTSRGNKLYENLVYRIINRYLSMVSAKSKRSPHILRHTFATHLLNQ 253

Query: 301 GATAHELMATYGWKTVDQAETYTK 324
           GA  + +    G  ++   + YT 
Sbjct: 254 GADMNSVKELLGHSSLASTQVYTH 277


>gi|83941218|ref|ZP_00953680.1| putative integrase for prophage [Sulfitobacter sp. EE-36]
 gi|83847038|gb|EAP84913.1| putative integrase for prophage [Sulfitobacter sp. EE-36]
          Length = 341

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 50/332 (15%), Positives = 103/332 (31%), Gaps = 30/332 (9%)

Query: 10  FVTKERTRHGKII-YYFRKGHGRRI---RLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
              + +   G +  +++    G +     + YP E  F  AY  A             P+
Sbjct: 2   HPVRRKLADGSVRFHFYAWRGGPKFWTDTVQYPTERAFFHAYAEA----------TARPQ 51

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR----S 121
                   ++  +  S         S+     +  +      D        +  R    +
Sbjct: 52  PADYMTHQMVDGFLSSTAMPK-GDRSQADIRKWALRFADHFKDAPAVIFEERGSRGEMNA 110

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
                KH+P            +  W V +  +  + C  + R          WT+ D + 
Sbjct: 111 WRALWKHSPKQHDMAGVHAVRILNWGVAEGKLTEHHCHKLHRLYEVDRSEIVWTQGDREA 170

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----NNIFSIKTQKTGTIITVEL 237
           F +   E    R        +GLR +D  +    H++         ++T K   +  + +
Sbjct: 171 FDAIAPE--WVRRILCAACETGLRPADLIKLTSAHVELTPLGRRLRVRTNKRKRLAHIPI 228

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSAT 295
                K++  TP G+     N +   +   + S   +    KA +  +   +  R  +AT
Sbjct: 229 TPTMAKVIDTTPSGQLLILTNANGNALTPHRASEGVRQWRDKAKLSDDLRLYDARGTAAT 288

Query: 296 ISADAGATAHELMATYGWK---TVDQAETYTK 324
              ++  +  E+    GW      +  E Y +
Sbjct: 289 RLLNSDLSLAEIANHMGWSVRYAANVIENYAR 320


>gi|260890377|ref|ZP_05901640.1| tyrosine recombinase XerD [Leptotrichia hofstadii F0254]
 gi|260859997|gb|EEX74497.1| tyrosine recombinase XerD [Leptotrichia hofstadii F0254]
          Length = 257

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 46/247 (18%), Positives = 92/247 (37%), Gaps = 25/247 (10%)

Query: 106 SGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163
               ++ +I  K I   +E+   K   +S ++ +++++  +K+    + V  +P   ++ 
Sbjct: 7   FAQKNFSEIEEKDIFEYIENLNEKLRRNSVLRKVSALKTFYKFCYLNKDVEKDPTGMIKT 66

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWS---EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220
            KR+       T ++M+Q         EG Q +L  + L+ +G R S++    ++ ++N 
Sbjct: 67  LKREQRLPEILTLKEMKQIVDNCPHTPEGMQNKLIIKILIATGARISETLNLEIKDVENQ 126

Query: 221 IFSIKT--QKTGTIITVELPDGFMKLLA----------MTPIGKETFFINNDKQKMNATQ 268
            +       K      + + D     +                    F N  ++K     
Sbjct: 127 DYEFIKVLGKGSKYRIIPIYDSLENEIKNYLAIYRPKLKNASESFKIFPNTRREK----- 181

Query: 269 FSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           F    K  A  A + K+   H  R   ATI    GA    +    G   +   E YT   
Sbjct: 182 FWKDLKTIAKNAKIEKNVYPHIFRHSLATILLGNGADIRIVQEILGHANITTTEVYTH-V 240

Query: 327 DRIRLGI 333
           ++ +L I
Sbjct: 241 EKSKLKI 247


>gi|149177761|ref|ZP_01856361.1| integrase/recombinase [Planctomyces maris DSM 8797]
 gi|148843411|gb|EDL57774.1| integrase/recombinase [Planctomyces maris DSM 8797]
          Length = 316

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 40/270 (14%), Positives = 91/270 (33%), Gaps = 25/270 (9%)

Query: 86  SLAVNSRISFESYF------DQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
            +AVN+  ++ S         ++ +     +            +  RK   ++  + L +
Sbjct: 37  GMAVNTVSAYRSDIVQFLDWYRMQKPVPLSEVDLAFLSGYLQHLNRRKLAATTVSRHLVT 96

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLA 195
           +++ F++ V +  +A +    +  PK      +  + E + Q  +          + R  
Sbjct: 97  LKLFFRYLVLEGVLAESVADLLNSPKLWKYLPKVLSPEKVNQLLAAPCRQDRYPLRDRAI 156

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT--------IITVELPDGFMKLLAM 247
              +  +G R ++     +  ++      +    G          + V   + +++    
Sbjct: 157 LAMMYATGCRVTEIVTLPLNSVKLTEGYARCVGKGNKERMVSLNPVAVAAVEAYLRHERP 216

Query: 248 TPIGKET----FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301
               + T     F+N   ++++        K  A + G +K  S H +R   AT     G
Sbjct: 217 VLTRRNTTEQALFLNRGGKQLSRVMVWNIVKKNAARVGCSKEVSPHTLRHSFATHMMAGG 276

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRL 331
           A    L    G   +   + YT   D  RL
Sbjct: 277 AEIRALQELLGHANIRTTQIYTH-VDHSRL 305


>gi|225630477|ref|YP_002727268.1| site-specific recombinase, phage integrase family [Wolbachia sp.
           wRi]
 gi|225592458|gb|ACN95477.1| site-specific recombinase, phage integrase family [Wolbachia sp.
           wRi]
          Length = 306

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 43/286 (15%), Positives = 93/286 (32%), Gaps = 37/286 (12%)

Query: 71  LKWLISEYRKSAHW----GSLAVNSRISFESYFDQIIRKS-----GDFDY---RKITTKH 118
           L  +I ++     W     S + N+  S+      +I        G+ +    + ++   
Sbjct: 3   LGSIIEKWY---EWLRCNRSYSPNTLESYMRDLKDLISFLNTHIGGEVNVGTLKNLSIPE 59

Query: 119 IRSG---VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL-SVERPKRKTEGIRPW 174
           +RS      +R     S  + L+ +R  FK+ ++  +   N  + S+ RP ++    +  
Sbjct: 60  LRSWLTSRYARGVNARSNTRALSVIRNFFKY-IKNNHNIDNEAVFSLSRPIQRRTLPKAL 118

Query: 175 TKEDMQQFKSFWSEGS--------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226
           +  +++                  +       L  +GLR S++    V  + N    I T
Sbjct: 119 SIPNIKTLLKEMKLSDLGEPWVVKREIAIIVLLYGTGLRISEALNLRVSDINNESL-IVT 177

Query: 227 QKTGTIITVELPDGF----MKLLAMTP--IGKETFFINNDKQKMNATQFSIWFKAKATKA 280
            K      V +         + +   P     +  F+    +K+  T  +   +      
Sbjct: 178 GKGDKQRQVFILPVVKKCIQEYIKACPYLDEAQHLFVGVRGKKLGRTYVANRLQKIRRML 237

Query: 281 GVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            +    S H  R   AT           +    G  +++  + YT 
Sbjct: 238 NLPEILSPHAFRHSFATHLLQEDIDIRSIQQLLGHSSLETTQIYTH 283


>gi|186474845|ref|YP_001856315.1| site-specific tyrosine recombinase XerC [Burkholderia phymatum
           STM815]
 gi|184191304|gb|ACC69269.1| tyrosine recombinase XerC [Burkholderia phymatum STM815]
          Length = 307

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 50/288 (17%), Positives = 92/288 (31%), Gaps = 31/288 (10%)

Query: 75  ISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTP 130
           I+ Y  S  H   L+ ++  ++     ++   +       +T   IR  V        + 
Sbjct: 7   IATYLSSLEHERRLSAHTLRAYTHELGELKTLANGRPLESLTATDIRGAVARAHAGGLSA 66

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFW 186
            S    L++ R  ++W   +  +  NP  +V  PKR     +  + +D    M+   +  
Sbjct: 67  RSIGHRLSAWRAFYRWLAGRVDLPANPVATVRAPKRAKTLPKALSVDDTHKLMETPATAT 126

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRA-------------GVQHLQNNIFSIKTQKTGTII 233
           +EG +     E    SGLR S+                 G   L +    +  +     +
Sbjct: 127 AEGLRDHAMLELFYSSGLRLSELVGLDAQYADADGYRSQGWLKLDDAEVEVLGKGNRRRV 186

Query: 234 TVELPDGFMKLLAMTPIGKET-------FFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284
                     L A   +  E         F++    +M+        K  A  AG+    
Sbjct: 187 VPVGSKALEALRAWLAVRGELVKHDPHPLFVSVRGNRMSPNVVRDRVKRAALTAGIPANV 246

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
             H +R   AT    +      +    G  ++   + YT G D   L 
Sbjct: 247 HPHVLRHSFATHVLQSSGDLRAVQELLGHASIAATQVYT-GLDFQHLA 293


>gi|256843164|ref|ZP_05548652.1| integrase [Lactobacillus crispatus 125-2-CHN]
 gi|256614584|gb|EEU19785.1| integrase [Lactobacillus crispatus 125-2-CHN]
          Length = 270

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 87/235 (37%), Gaps = 17/235 (7%)

Query: 107 GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
           G    R+   +     +  RK   SS ++ ++S+   +++  R++ VAI+P   +   + 
Sbjct: 16  GWTKVRERDIQVYLQHLAERKLARSSQLRKMSSLHSFYRFLTRRKLVAIDPTQGITLRRG 75

Query: 167 KTEGIRPWTKEDMQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222
           + +  + + + +++Q             +    FE    +G+R S+     +  L  ++ 
Sbjct: 76  EKKLPQFFYQPELKQVFDSLKGNKPLTMRNLAMFELFYATGMRVSEVSNLTLNQLDLDLQ 135

Query: 223 SIKTQKTGTI-ITVELPDGFMKLL-----AMTP-----IGKETFFINNDKQKMNATQFSI 271
           +I     G     V   D   K L        P       ++  F+NN    + +     
Sbjct: 136 TILVHGKGNKDRYVAFDDKTKKSLIAYLENARPLLLKNDDEQHVFLNNQGTGITSRGIET 195

Query: 272 WFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             +    +AG++     H +R   AT   + GA    +    G  ++   + YT 
Sbjct: 196 VMQKTFNQAGISGKVHPHELRHSFATAMLNNGADLRSVQELLGHSSLSATQIYTH 250


>gi|326387724|ref|ZP_08209330.1| phage integrase [Novosphingobium nitrogenifigens DSM 19370]
 gi|326207770|gb|EGD58581.1| phage integrase [Novosphingobium nitrogenifigens DSM 19370]
          Length = 300

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 46/263 (17%), Positives = 86/263 (32%), Gaps = 18/263 (6%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLF 144
              A N+  ++        +  GD           R G       P+S  +  +++R  +
Sbjct: 22  RGAAANTLAAYRRDLAGAAQVLGDLALAD-RGALARLGEVWADLAPASLARKASALRQFY 80

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW--------SEGSQPRLAF 196
            + V +     +P  ++ R + +    R     ++    S              +     
Sbjct: 81  AFLVEEGLREDDPGDALPRVRARRPLPRLLDHGEIGALFSLAEADAAEGDPAALRLLALV 140

Query: 197 EFLLYSGLRCSDSCRAGVQHL-QNNIFSIKTQKTGTIITVELPD----GFMKLLAMTPIG 251
           E L  SGLR ++     +  + ++  F   T K G    V + +         L + P G
Sbjct: 141 ELLYGSGLRATELVSLPLVAVPRDAPFLAITGKGGQQRLVPVGERAGAALRDWLRVRPAG 200

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELM 308
               F +     +   +     +  A +AG++    S H +R   AT   + GA    L 
Sbjct: 201 GRYVFPSPRGGHLTRVRLFQLLRDLALRAGLDPEKVSPHVLRHAFATHLLEGGADLRVLQ 260

Query: 309 ATYGWKTVDQAETYTKGADRIRL 331
              G   +   + YT   D  RL
Sbjct: 261 TLLGHADIATTQIYTH-VDGARL 282


>gi|255994142|ref|ZP_05427277.1| integrase/recombinase XerD [Eubacterium saphenum ATCC 49989]
 gi|255993810|gb|EEU03899.1| integrase/recombinase XerD [Eubacterium saphenum ATCC 49989]
          Length = 298

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 37/263 (14%), Positives = 87/263 (33%), Gaps = 26/263 (9%)

Query: 85  GSLAVNSRISFESYFDQI-IRKSGD-----FDYRKITTKHIRSGVESRKHTPSSAIQFLT 138
            SL+ ++  ++        I   G         +          ++ + + P++  + ++
Sbjct: 18  RSLSTSTIGAYHEDLQAFHIFVYGKGIKGYKRVKNTDIDDFVENLKRQDYAPATIRRRIS 77

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194
           S+R  + + V    +  NP L ++ PK   + I  +T E++    +        G + + 
Sbjct: 78  SVRAFYNYLVNTGAMRKNPTLGLKAPKLNKKTIDYFTVEEIDLLLASVTDDTDSGIRDKA 137

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG--- 251
             E +  +GL+ ++     +  +      I        + + +     K +         
Sbjct: 138 VLELMYAAGLQLTELLELKMSDVDIRAGLITAGLKKRRV-IPIGSHARKAVEKYISDVRK 196

Query: 252 -----------KETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISAD 299
                          F+N   +K +       FK  A K G+ K + + +R   A     
Sbjct: 197 LKFSKLSKKDASSPLFVNYLNKKFSRQGIWKIFKDYAAKTGIIKFTPNMLRNSFAVHMLQ 256

Query: 300 AGATAHELMATYGWKTVDQAETY 322
            GA    +    G + +   + Y
Sbjct: 257 NGADIKTVQELMGHENISITKQY 279


>gi|239905648|ref|YP_002952387.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
 gi|239795512|dbj|BAH74501.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
          Length = 374

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 57/310 (18%), Positives = 101/310 (32%), Gaps = 33/310 (10%)

Query: 35  LPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT--LKWLISEYRKSAHWGSLAVNSR 92
           LP P   +   A   A TGST          ++P+   L  L S+Y              
Sbjct: 50  LPVPDPQSVTAAVQVAQTGSTTDTPTSQVLGQQPSGMLLSDLGSKYLAHMQASGRTEKHI 109

Query: 93  ISFESYFDQI-IRKSGDFDYRKIT--------TKHIRSGVESRK--HTPSSAIQFLTSMR 141
            + E   + + I   GD     +T          H +          +  +  ++   + 
Sbjct: 110 RNIEHLVNHVFIPVLGDKPVNDLTYQDDMVPFIIHFQGVSSRTGKVRSQYTVNKYCDYLS 169

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW----TKEDMQQFKSFWSEGSQPRLAFE 197
            +F + +   + ++NP    ++PK +     PW    T +D ++  +        + A E
Sbjct: 170 FIFNFGIDNGFTSVNPLKIWKKPKVQ-----PWDMKLTLDDAKKIMANAEP--HLKWAME 222

Query: 198 FLLYSGLRCSD--SCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE 253
                G R  +        + +        I   KT T  TV +   F+K L       +
Sbjct: 223 VCFNLGTRPGESELLSLRWEDVDFKAGTVRIYASKTKTYRTVPINPEFLKRLEKEQAESQ 282

Query: 254 TFFINND-KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMAT 310
           T ++     +K+        FK    +AG+N     + +R   AT     GA    +   
Sbjct: 283 TGYVIEYMGRKLT--TIRKAFKNACKRAGINYPTRMYDLRHLFATTLLRKGADLAAVSKM 340

Query: 311 YGWKTVDQAE 320
            G  TV    
Sbjct: 341 MGHSTVKMTA 350


>gi|282858397|ref|ZP_06267577.1| phage integrase, N-terminal SAM domain protein [Prevotella bivia
           JCVIHMP010]
 gi|282588845|gb|EFB93970.1| phage integrase, N-terminal SAM domain protein [Prevotella bivia
           JCVIHMP010]
          Length = 290

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 44/261 (16%), Positives = 99/261 (37%), Gaps = 21/261 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSG---VESRKHTPSSAIQFL 137
              ++ +  ++        R   +FD    +  I +  +R+    +   K   +S  + L
Sbjct: 13  KGYSLKTIDNYRDDLKGFERFYKNFDETLSWESIDSDIVRNWVEFMMDNKAAAASVNRRL 72

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK--SFWSEGSQPRLA 195
           +++R L++++++  +V  +P   ++ PK+     +   + ++ Q      W++  Q  LA
Sbjct: 73  SALRSLYRYSLKHGFVEKDPVYGIQGPKKPKSLPQFVKESELDQLLQDEMWADTYQDLLA 132

Query: 196 FEF---LLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAM---- 247
                 L  +G+R  +     +  +  +  S+K T K      +   +     L      
Sbjct: 133 RTLIVVLYETGMRLGEIVGLNLNSVDFHTSSVKVTGKRNKQRVIPFGEELESSLKAYLGK 192

Query: 248 --TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGAT 303
                G+E FF     +++N  Q     K   +K      ++ H +R   AT   +  A 
Sbjct: 193 RKAIAGEEAFFTTEKGERVNDYQVRDLVKKNLSKVSTLKKRTPHVLRHSFATAMLNHNAG 252

Query: 304 AHELMATYGWKTVDQAETYTK 324
              +    G +++   E YT 
Sbjct: 253 LESVRKLLGHESLSTTEIYTH 273


>gi|328462457|gb|EGF34479.1| tyrosine recombinase xerD [Lactobacillus rhamnosus MTCC 5462]
          Length = 182

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 55/169 (32%), Gaps = 15/169 (8%)

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVE 236
           M +  +    G + R  FE +  +GLR S+     +   HL  N+  + T K      V 
Sbjct: 1   MAKPDTTKPLGLRDRAIFELMYATGLRVSEVVGLRLDQLHLAMNLLQV-TGKGDKERLVP 59

Query: 237 LPDGFMKLLAMTPIGKE----------TFFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284
           +       +                    F+N     +         KA     G+ K  
Sbjct: 60  ISPQAADWVNRYLQESRPRLIKHQQPKAVFVNFHGHALTRQAIWKNLKAYIASVGIEKDV 119

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           + H +R   AT   + GA    +    G   +   + YT  +++  + +
Sbjct: 120 TPHTLRHSFATRLLENGADLRVVQELLGHSDISTTQIYTHLSNQHLVAV 168


>gi|225849231|ref|YP_002729395.1| recombinase [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225644770|gb|ACN99820.1| recombinase [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 297

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 45/285 (15%), Positives = 95/285 (33%), Gaps = 28/285 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE---SRKHTPSSAIQFLTSMR 141
              + N+  ++    +Q I+  GD +   ++   I        S+K   S+  + L ++ 
Sbjct: 15  ADKSPNTIKNYSVDLNQFIKIVGDKEVELVSKSDIAKFRMVLQSQKKKSSTIARKLATLN 74

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201
            L+++ +  E V ++P     RPK         + E+++          Q +     LL 
Sbjct: 75  SLYQYLIDLELVKVSPITKSHRPKISQRIPSSLSNEEIKTLLKNID-NLQDKAIVVLLLT 133

Query: 202 SGLRCSDSCRAGVQHL--------------------QNNIFSIKT-QKTGTIITVELP-D 239
           +GLR S+       ++                    +++I  I+   K      V +   
Sbjct: 134 TGLRSSELLNIKKSNILIERQNQTFSVDKVIEEGLKEDDIAYIRVVGKGDKEREVPITGK 193

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISAD 299
               L+                  ++        K    K   +   H +R  +AT++  
Sbjct: 194 PLQILVEYLKEVNHYIDSKTPIFPISYHTLWRKIKDIGKKIATSLHPHKLRHTAATVALA 253

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
           +GA    +    G  +      Y K   +  L  K ++ +S  +D
Sbjct: 254 SGAELRVIQELLGHASPITTARYAKVGQKQLL--KATKALSENID 296


>gi|120609369|ref|YP_969047.1| phage integrase family protein [Acidovorax citrulli AAC00-1]
 gi|120587833|gb|ABM31273.1| phage integrase family protein [Acidovorax citrulli AAC00-1]
          Length = 401

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 57/308 (18%), Positives = 102/308 (33%), Gaps = 29/308 (9%)

Query: 44  IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-I 102
           +     A            +  +   T+  L  ++ +         +++  +++  D+ I
Sbjct: 73  LAQEWLAQVRRGGDPSADKAMARSAPTVAELCKKFMEDHSKQRNKPSTQRGYQAVIDRCI 132

Query: 103 IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA--INPCLS 160
           +   G    + +    + S ++   H P+ A +  + MR +F  A    Y     NPC  
Sbjct: 133 VPMLGRMKVQDVKRPDVASTMKKMVHKPAEANRAFSVMRKMFNLAEVWGYRPDGTNPCRH 192

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWS-------------EGSQPRLAFEFLLYSGLRCS 207
           V       +     + E+M +   +                    RL FEF      R S
Sbjct: 193 VPM-YPNGKATHLISDEEMGKLFRYLDFLETDGLGLDHAILPLAIRLQFEFA----GRRS 247

Query: 208 DSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPI--GKETFFI--NNDK 261
           +        +   N        KTG +    L +   +LL+      G    F   N+  
Sbjct: 248 EIVTLQWDWVDLENRRVVWPDSKTGGMSK-PLSEEAHRLLSTASRQDGCPHVFPSPNHPG 306

Query: 262 QKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
           + M   ++   +     +AGV     HG+R  SAT  A++G      MA    KTV    
Sbjct: 307 KPMTTGEYYSGWTRILKRAGVTHVGTHGIRHRSATDIANSGIPVKVGMALTAHKTVAMFM 366

Query: 321 TYTKGADR 328
            Y    D+
Sbjct: 367 RYVHTEDK 374


>gi|291286568|ref|YP_003503384.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809]
 gi|290883728|gb|ADD67428.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809]
          Length = 390

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 55/312 (17%), Positives = 113/312 (36%), Gaps = 26/312 (8%)

Query: 39  HESTFI-PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFES 97
            + TF    Y      +       +SP+    T   L  + +K+      +  + I++ S
Sbjct: 59  DDKTFKYAEYFPESRVAKALPMADSSPQISFGTYAILWLDSQKTV----FSHATFITYTS 114

Query: 98  YFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINP 157
             + ++    +     I   HIR+ +++ + +P +    +  +  +   AV  + +  NP
Sbjct: 115 SINNLLATFENMSICDIKPAHIRTYIKNSEVSPKTLKNHVGVLSSILSAAVEDDLIPKNP 174

Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA-FEFLLYSGLRCSDSCRAGVQH 216
           C SV+ P   +  + P + E++    ++        LA F    ++G+R  +        
Sbjct: 175 CTSVKLPHISSVEVDPLSLEEITMILNWMKSHHPNMLAFFAVAFFTGMRTGEIMGLQWGD 234

Query: 217 LQNNIFSIK------------TQKTGTIITVELPDGFMKLL----AMTPIGKETFFINND 260
           +  N  +I               KT    TV++     + L      T +  E  F+  +
Sbjct: 235 IDFNSHTITISRTITAGKLKHRTKTADSRTVDILTELDEYLSYHKQFTYMKSEWLFLTYE 294

Query: 261 KQKMNATQ--FSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVD 317
            +  N T      ++K      G+  ++ +  R   A +  D G   + L    G KT+D
Sbjct: 295 NKPFNKTDNIIKTYWKPCLKALGIKYRTLYQTRHTFACLMLDVGENINWLKKMLGHKTLD 354

Query: 318 QA-ETYTKGADR 328
                Y    D+
Sbjct: 355 MILRRYGNRIDK 366


>gi|225867105|ref|YP_002752483.1| site-specific recombinase, phage integrase family [Bacillus cereus
           03BB102]
 gi|225786133|gb|ACO26350.1| site-specific recombinase, phage integrase family [Bacillus cereus
           03BB102]
          Length = 322

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 46/284 (16%), Positives = 92/284 (32%), Gaps = 28/284 (9%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES---RKHTPSSAIQFLTSMRV 142
                +   +   F   +R+        IT KH++  +     R   P++    +++++ 
Sbjct: 41  GFRKRTIDDYTKLFRYFMRELNIDRVEIITAKHVQMYINKLISRDLAPATVNIRISALKS 100

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLAFEF 198
           +FK    Q Y   NP +   + +     I       +++           G +   A   
Sbjct: 101 IFKRLHEQGYTKSNPAIDFVKLRTDEAPIFTLNNNQIKRLFRVVDKTTYAGYRDYCAMLL 160

Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQ----KTGTIITVELPDGFMKLLAMTPIGKET 254
           +L+ GLR ++  +  V  L  +  +I       K      V +     + L M       
Sbjct: 161 MLHCGLRVNEVNQLEVNDLDFDNLTIMLSGAKNKNRKTRAVPMTKRVAEELRMLIEESRD 220

Query: 255 FF-------INNDKQKMNATQFSIWFKAKATKAGVNK----SAHGVRKFSATISADAGAT 303
           +F       + +D   ++              AG++K    S H +R   AT     G +
Sbjct: 221 YFEVTTNVFLTHDGNSIDNDLLRKRMYRYGQFAGLSKECRPSPHSLRHTFATNFLRNGGS 280

Query: 304 AHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
            + LM   G   +     Y       RL  +  +     V + +
Sbjct: 281 VNALMRIMGHADITTTMRYV------RLNDEAVKEQYEKVAAKN 318


>gi|152988673|ref|YP_001351339.1| site-specific tyrosine recombinase XerC [Pseudomonas aeruginosa
           PA7]
 gi|166918894|sp|A6VE54|XERC_PSEA7 RecName: Full=Tyrosine recombinase xerC
 gi|150963831|gb|ABR85856.1| tyrosine recombinase XerC [Pseudomonas aeruginosa PA7]
          Length = 303

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 38/288 (13%), Positives = 97/288 (33%), Gaps = 24/288 (8%)

Query: 85  GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIR---SGVESRKHTPSSAIQFLT 138
             ++ ++   ++    +I+    K+G  D+  + T+ +R   + +  +  +  S  + L+
Sbjct: 16  RQVSAHTLDGYQRDLLKILALAEKAGLTDWNALDTRTLRTFVARLHQQGQSSRSLARLLS 75

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRL 194
           + R  +++ +R+     +P   +  PK   +  R    +   Q      E      + + 
Sbjct: 76  ATRGFYQYLLREGRCRHDPANGLSAPKSPRKLPRTLDADRALQLLDGAVEDDFIARRDQA 135

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-VELPDGFMKLLAM------ 247
             E    SGLR S+     ++ L      ++ +  G  +  + +     + L        
Sbjct: 136 LLELFYSSGLRLSELVGLDLEWLDLKEGLVRVRGKGNKVRELPVGKAARQALEAWLPLRA 195

Query: 248 -TPIGKETFFINNDKQKMNATQFSIWFKAK-ATKAGVNKSAHGVRKFSATISADAGATAH 305
                    FI    +++      +  +     + G +   H +R   A+   ++     
Sbjct: 196 QATPEDGAVFIGRGGKRLTPRAVQLRVRQAGVRELGQHLHPHMLRHSFASHLLESSGDLR 255

Query: 306 ELMATYGWKTVDQAETYT-----KGADRIRLGIKNSRRISSVVDSDDP 348
            +    G   +   + YT       A         ++R  +    +DP
Sbjct: 256 AVQELLGHADIATTQIYTHLDFQHLASVYDRAHPRAKRKGNADGGNDP 303


>gi|52424578|ref|YP_087715.1| site-specific tyrosine recombinase XerC [Mannheimia
           succiniciproducens MBEL55E]
 gi|81387473|sp|Q65V80|XERC_MANSM RecName: Full=Tyrosine recombinase xerC
 gi|52306630|gb|AAU37130.1| XerC protein [Mannheimia succiniciproducens MBEL55E]
          Length = 295

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 39/260 (15%), Positives = 95/260 (36%), Gaps = 21/260 (8%)

Query: 85  GSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLT 138
             ++  +  +++   D   +I++++   ++R+++   +R  +   K +     S    L+
Sbjct: 16  RQVSSYTLTNYQRQMDAVMKILQENDIQNWRQVSPSVVRFILAQSKKSGLHEKSLALRLS 75

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK---SFWSEGSQPRLA 195
           ++R    + V Q  + +NP + +  PK+     +    E + +     S      + +  
Sbjct: 76  ALRQFLAFLVLQGELKVNPAIGISAPKQGKHLPKNINAEQLNKLLDNNSKEPIDLRDKAM 135

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLLA 246
            E +  SGLR S+     +  L      I+    G    +          + +     L 
Sbjct: 136 LELMYSSGLRLSELQGLNLTSLNFRSREIRVLGKGNKERILPFGRHASHSVQEWLKVRLL 195

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATA 304
             P   +  F+++   +M+        +    + G+N   + H +R   AT   +A +  
Sbjct: 196 FNP-KDDALFVSSLGNRMSNRSIQKRMEIWGVRQGLNSHLNPHKLRHSFATQMLEASSDL 254

Query: 305 HELMATYGWKTVDQAETYTK 324
             +    G   +   + YT 
Sbjct: 255 RAVQELLGHSNLSTTQIYTH 274


>gi|330443758|ref|YP_004376744.1| tyrosine recombinase XerD [Chlamydophila pecorum E58]
 gi|328806868|gb|AEB41041.1| tyrosine recombinase XerD [Chlamydophila pecorum E58]
          Length = 321

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 35/229 (15%), Positives = 74/229 (32%), Gaps = 23/229 (10%)

Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
               +  R    ++  + L +++V F +    + +   P   +E PK         + ++
Sbjct: 81  FVEKLHERNEAEATLARRLIALKVFFIFLKDAQLLKHPPI--IEHPKIWKRLPTVLSPQE 138

Query: 179 MQQF-----KSFWSEG---SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
           ++Q      ++        ++       L  +G+R S+ C   +  + +    + T K  
Sbjct: 139 VEQLLLTPKRAKHLSPLIVARDTAILYTLYSTGIRVSELCDLEIGDVNDEFIRV-TGKGS 197

Query: 231 TIITVEL-----------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK 279
               V L              F  L+      +E  F++   +K+  +         A +
Sbjct: 198 KTRLVPLGSLARDAIDAYLSPFRDLMRQKSPKEEHLFLSFRGKKLERSCIWRRIHEYAKQ 257

Query: 280 -AGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
                 S H +R   AT   +  A    +    G   +   E YT  A 
Sbjct: 258 ITSKPVSPHSLRHAFATHLLNNKADLRVIQEMLGHSRISSTEIYTHVAS 306


>gi|300812249|ref|ZP_07092687.1| tyrosine recombinase XerC [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|300496763|gb|EFK31847.1| tyrosine recombinase XerC [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|325686014|gb|EGD28073.1| site-specific tyrosine recombinase XerC [Lactobacillus delbrueckii
           subsp. lactis DSM 20072]
          Length = 295

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 40/264 (15%), Positives = 101/264 (38%), Gaps = 24/264 (9%)

Query: 85  GSLAVNSRISFESYF---DQIIRKSGDFD-YRKITTKHIRSGVES--RKHTPSSAIQFLT 138
            S +  + ++++       +  +++G F  + +I+ + +   + +  +K   S+  + L+
Sbjct: 15  RSYSPKTVLAYQKDLAAAKKFWQENGGFPGWDQISRRDLEIYLLATGQKLASSTLSRKLS 74

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG----SQPRL 194
           S++  ++   R+  V  +P ++++  + K +    + ++++ Q     ++G     + R 
Sbjct: 75  SLKSFYRLLTRRGLVKADPTVAIQLRRGKKKLPEFFYQDEVGQVIRSLNDGKPLTVRNRA 134

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLL-----AMT 248
                  +G+R S+     ++ L   N   +   K      V       K L     A  
Sbjct: 135 IVALFYATGMRLSELTDLKIKQLDLENGMILVHGKGNKDRYVFFDQESKKYLEEYLQAAR 194

Query: 249 P------IGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADA 300
           P            F+N   + +++   +   +    KAG+      H +R   AT   + 
Sbjct: 195 PSLLKNEPDTGAVFLNKLGRPISSRGIAKAVQQIFQKAGLTAGAHPHELRHSFATAMLNN 254

Query: 301 GATAHELMATYGWKTVDQAETYTK 324
           GA    +    G + +   + YT 
Sbjct: 255 GADLRSVQELLGHEDLSTTQIYTH 278


>gi|294828085|ref|NP_712528.2| integrase/recombinase XerD [Leptospira interrogans serovar Lai str.
           56601]
 gi|302393797|sp|Q7ZAM8|XERC_LEPIN RecName: Full=Tyrosine recombinase xerC
 gi|302393800|sp|Q72RY9|XERC_LEPIC RecName: Full=Tyrosine recombinase xerC
 gi|293385933|gb|AAN49546.2| integrase/recombinase XerD [Leptospira interrogans serovar Lai str.
           56601]
          Length = 311

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 50/260 (19%), Positives = 92/260 (35%), Gaps = 22/260 (8%)

Query: 85  GSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVESRKHT----PSSAIQFLT 138
            + + N+  ++           +    D  +I    IRS              S  + L+
Sbjct: 31  KNYSQNTINAYSIDLKFFFEFCEKEQLDIFQIEPVDIRSYFAYLAKKHEIDRRSQSRKLS 90

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS------QP 192
           S+R  +K  +R++ V  NP   +  PK + E  + +   + ++   F SE +      + 
Sbjct: 91  SLRTFYKVLLREDLVKSNPATQLSFPKVRKEVPKNFRINETEEILEFESENASEVSEIRD 150

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT--------VELPDGFMKL 244
           R   E L  SGLR  +   A +  L  ++  +K    G            V     +++ 
Sbjct: 151 RAMIEVLYSSGLRVFELVNAKLNSLSKDLTVLKVLGKGRKERFVYFGKEAVSSLQKYLEY 210

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGA 302
             ++    E  F+N   +K+           +  K G  K+   H  R   AT   DAGA
Sbjct: 211 RNVSFPDAEEIFLNQRGKKLTTRGVRYILNERRKKMGWEKTITPHKFRHTFATDLLDAGA 270

Query: 303 TAHELMATYGWKTVDQAETY 322
               +    G  ++   + Y
Sbjct: 271 EIRAVQELLGHSSLSTTQIY 290


>gi|167585124|ref|ZP_02377512.1| site-specific tyrosine recombinase XerC [Burkholderia ubonensis Bu]
          Length = 306

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 43/280 (15%), Positives = 88/280 (31%), Gaps = 32/280 (11%)

Query: 75  ISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTP 130
           I+ Y  +  H   L+ ++  ++     ++ + +       ++   +R  V        + 
Sbjct: 6   IAAYLSNLKHVRQLSDHTLRAYTHELGELKKLAAGRPLEALSAVDMRGAVARAHAAGLSA 65

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
            S    L++ R  ++W  ++  +  NP  +V  PKR     +  + +D          G+
Sbjct: 66  RSISHRLSAWRAFYRWLAQRIEMPANPVAAVRAPKRAKTLPKALSVDDATALMDAPLPGT 125

Query: 191 ----QPRLAFEFLLYSGLRCSDSCRA-------------GVQHLQNNIFSIKTQKTGTII 233
               +     E L  SGLR ++                 G   L     +++  K     
Sbjct: 126 TEGLRDHAILELLYSSGLRLAELIGLDVRYAQADGYRSAGWLDLAEAEVTVR-GKGNKER 184

Query: 234 TVELPDGFMKLLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284
            V +    +  L                  F++    +M+        K  A  AG+   
Sbjct: 185 KVPVGRKAIDALNAWLAVRGEFVKHDPHPLFLSVRGNRMSPGVVRERVKRAALAAGIPAH 244

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
              H +R   AT    +      +    G  +V   + YT
Sbjct: 245 VHPHVLRHSFATHVLQSSGDLRAVQELLGHASVAATQVYT 284


>gi|312793729|ref|YP_004026652.1| integrase family protein [Caldicellulosiruptor kristjanssonii
           177R1B]
 gi|312180869|gb|ADQ41039.1| integrase family protein [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 319

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 28/272 (10%), Positives = 76/272 (27%), Gaps = 22/272 (8%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
            +  +  +         +  +   +E +     ++  D        +       S+   P
Sbjct: 14  WEDALQLFLSYKKAQGRSDLTIRDYEIHIRAFFKRYPDCFNDTQKLRKCLIEYLSQPMKP 73

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS--- 187
            +    + +++    W V +  +  NP    +  K     +      D++  +       
Sbjct: 74  VTYNLRMKNLKAFLNWCVEEGIIPTNPIAKFKPRKTDDRIVEI----DIETLQKLLQLPD 129

Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIITVELPD 239
                G +        L +G+R  ++      H       +       KT     + +  
Sbjct: 130 RKTFAGLRDYALMLLTLDTGIRPKEAFSLLKDHFDFKNMQVVIPSDVAKTRVSRVLPISP 189

Query: 240 GFMKLLAMTPIGKET-------FFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKF 292
                +      +          F +   + +N  +++   +  + + GV    + +R  
Sbjct: 190 VTANAIKKLISSRHPQWDDSVPVFCSVTGKPLNRYRWNERMREYSKQLGVKIKPYDLRHM 249

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324
            A +    G     L    G  T++  + Y  
Sbjct: 250 FALLYLKNGGYELSLQKIMGHTTLEMTKKYVH 281


>gi|150025257|ref|YP_001296083.1| tyrosine recombinase XerC [Flavobacterium psychrophilum JIP02/86]
 gi|149771798|emb|CAL43272.1| Tyrosine recombinase XerC [Flavobacterium psychrophilum JIP02/86]
          Length = 298

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 43/264 (16%), Positives = 101/264 (38%), Gaps = 26/264 (9%)

Query: 85  GSLAVNSRISFESYFDQ----IIRKSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFL 137
            + +  + +++          +  K  +    +++   IRS + S      + +S  + +
Sbjct: 16  KNYSPLTALAYGKDLQFFQTFLEIKFDNTPLEEVSYTLIRSWIVSMVDAEMSNTSVNRKI 75

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ------QFKSFWSEGSQ 191
            S++  +K+ ++ + + INP    +  K   +   P+++ ++       Q+K+ + EG +
Sbjct: 76  ASLKAFYKFLLKTKQIEINPLSKHKALKTPKKIQIPFSEAELDTVLTQIQYKAGF-EGMR 134

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM--- 247
            +L  +    +G+R S+     + +      +IK   K      + L    +K + +   
Sbjct: 135 DKLIIDLFYTTGIRRSELISLQISNTNLVAGTIKVIGKRNKERIIPLLPVIIKQIKVYLA 194

Query: 248 ------TPIGKETFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSAHGVRKFSATISAD 299
                   + KE   + ++  K N T                V KS H +R   AT   +
Sbjct: 195 ERKQLSLIVAKENLILLSNGNKANETFVYRLINDYFSNVSEKVKKSPHMLRHTFATHMLN 254

Query: 300 AGATAHELMATYGWKTVDQAETYT 323
            GA  + +    G  ++   + YT
Sbjct: 255 HGADLNSIKELLGHSSLASTQVYT 278


>gi|253573104|ref|ZP_04850494.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|256842101|ref|ZP_05547606.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|301308733|ref|ZP_07214685.1| mobilizable transposon, int protein [Bacteroides sp. 20_3]
 gi|251837298|gb|EES65399.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|256736417|gb|EEU49746.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|300833257|gb|EFK63875.1| mobilizable transposon, int protein [Bacteroides sp. 20_3]
          Length = 397

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 58/295 (19%), Positives = 107/295 (36%), Gaps = 37/295 (12%)

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-FDYRKITTKHIRSGV 123
           + K   + +L++   +S   GSL  N   +  +   ++    GD   +R I    + S V
Sbjct: 99  KSKANVIDYLMNMRSQSKERGSL--NYEKTVGNTIRELKLFRGDYIAFRDIDKDFLNSFV 156

Query: 124 ESRK-HTPSSAIQFLTS---------------MRVLFKWAVRQEYVAINPCLSVE---RP 164
           +  K    +S    L +               +R     A ++  + +NP    +   + 
Sbjct: 157 DFLKQAKKASKFGLLKAGGVLSNNSVIAYYGVLRTAINRAYKEGIITVNPTKEFDFASKV 216

Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNN 220
           K +       T E++++      +    + AF F    GLR SD  +     L    +  
Sbjct: 217 KAEVSRREYLTIEELKRLIGTECKYEIMKQAFLFSCLCGLRVSDIRKLKWNDLQKSGERI 276

Query: 221 IFSIKTQKTGTIITVELPDGFMKLLAMT--PIGKETFF-INNDKQKMNATQFSIWFKAKA 277
              IK QKT   + + + D  +K L       G +  F + ++         +   +  A
Sbjct: 277 RIEIKMQKTKEPLYLPISDEALKWLPQQNEAKGDDLIFPLTHEG------TINKILQKWA 330

Query: 278 TKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
             AGV  + S H  R   AT+    GA  + +    G K +   + Y K  D+ +
Sbjct: 331 KDAGVIKHISFHVARHTHATMMLTLGADLYTVSKLLGHKNIATTQIYAKIVDKKK 385


>gi|312880071|ref|ZP_07739871.1| integrase family protein [Aminomonas paucivorans DSM 12260]
 gi|310783362|gb|EFQ23760.1| integrase family protein [Aminomonas paucivorans DSM 12260]
          Length = 308

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 40/270 (14%), Positives = 89/270 (32%), Gaps = 28/270 (10%)

Query: 85  GSLAVNSRISFES---YFDQIIRKSGD--FDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
              + ++  ++ S   +F+    + G       +         ++ +    SS  +    
Sbjct: 33  RGASEHTLRAYRSDLTHFEDFCARRGKPPCPPEENELTLFLRELQRQGLAASSVQRRAAC 92

Query: 140 MRVLFKWAVRQEYVAINPCLS---VERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQP 192
           +R   ++   Q      P  S   +  P R     +  T+ ++ +             + 
Sbjct: 93  LRSFLRFLQEQGE----PAASREPLSLPDRPAPLPQILTEGEVGRLLETCDGSASLDLRD 148

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-ELPDGFMKLLAM---- 247
           R  FE +   GLR S++C   ++ +     +++ Q  G    +  L     K +      
Sbjct: 149 RALFELIYGCGLRASEACSLRLRDVDFTGGTLRVQGKGNKTRIVPLLGEVRKAVERYLAA 208

Query: 248 ----TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADA 300
                P   E   ++ +++ +         + +  +AG+  S    H +R   AT     
Sbjct: 209 GRGEAPGDPEALLLSRNRRPLRREDLWRIVRRRGVQAGIPSSRLHPHILRHSFATHLLRH 268

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIR 330
           G     L +  G  ++   E YT     +R
Sbjct: 269 GMDLRTLQSLLGHASLGTTEKYTHFDQELR 298


>gi|300775996|ref|ZP_07085855.1| tyrosine recombinase XerC [Chryseobacterium gleum ATCC 35910]
 gi|300505129|gb|EFK36268.1| tyrosine recombinase XerC [Chryseobacterium gleum ATCC 35910]
          Length = 306

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 45/274 (16%), Positives = 97/274 (35%), Gaps = 27/274 (9%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQII----RKSGDFDYRKITTKHIRSGVESRKH 128
           ++ ++ +   +    + ++  S++   +       R     +  K   K IR+ +     
Sbjct: 12  MLEKFLEYLEFEKRYSPHTVTSYKKDLEDFSHFFLRTESSDNLAKADKKIIRNFIVELSE 71

Query: 129 ---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ----- 180
              +  S  + L+S+R  + + ++   + ++P   +   K   E   P +KE+M      
Sbjct: 72  HNISKRSINRKLSSLRSFYLFLLKIGEIKVSPTEGISSLKFYAEKQIPMSKEEMADLNDR 131

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELP 238
            F+         +   E L  +G+R ++ C    +++        I  +     + V + 
Sbjct: 132 VFEQVHDV--LEKCIMEVLYQTGMRKAELCGLIFENVDLYGKELKIIGKGNKERV-VPIS 188

Query: 239 DGFMKLL-------AMTPIGKETFFINNDKQKMNATQFSIWFKAKA--TKAGVNKSAHGV 289
               +LL             K  FF+N   +K+N     +              KS H +
Sbjct: 189 SELAELLTSYLEIRNPQTEYKSYFFVNKKGKKLNEKFVYVVVNKYLSLITTKEKKSPHIL 248

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           R   AT   D GA   ++    G  ++   + YT
Sbjct: 249 RHSFATHVLDNGAEISKVKKILGHSSLASTQVYT 282


>gi|298529953|ref|ZP_07017355.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298509327|gb|EFI33231.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
          Length = 312

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 43/266 (16%), Positives = 85/266 (31%), Gaps = 28/266 (10%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDF--------DYRKITTKHIRSGVESRKHTPSSAIQF 136
              +  +  ++     Q                D  +         +     + SS  + 
Sbjct: 23  KGFSGATLQAYSKDLLQWEEFLQTRNKTCASPQDIVRADVHAFLVQMHKLNLSKSSMARK 82

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFWSEGSQP 192
           L+S+R  F++  +Q+ +  NPC  V  PK++         +     +Q         ++ 
Sbjct: 83  LSSLRTFFRFLQKQKIIQQNPCTGVRNPKQEKPQPGVLNVDQALEMVQAQLEPSPRNTRD 142

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-----ITVELPDGFMKLLAM 247
               E L  SGLR S++    +  +      ++ Q  G       +T    +   + +A+
Sbjct: 143 LALAEVLYGSGLRVSEALSLDLDDVDQGQSLVRVQGKGRKERLAFLTRPGLERLSQYIAL 202

Query: 248 TPI-----GKETFFINNDKQKM-NATQFSIWFKA---KATKAGVNKSAHGVRKFSATISA 298
                    ++  F+     ++       I  +     A   GV  S H +R   AT   
Sbjct: 203 RHAFEPDLREKALFLGMRGGRLHRREAVRIIQRLGQIFARAQGV--SPHTLRHSFATHML 260

Query: 299 DAGATAHELMATYGWKTVDQAETYTK 324
            AGA    +    G   +   + YT 
Sbjct: 261 QAGADLRIVQELLGHSRISTTQRYTH 286


>gi|17548311|ref|NP_521651.1| site-specific tyrosine recombinase XerC [Ralstonia solanacearum
           GMI1000]
 gi|34222935|sp|Q8XTL6|XERC2_RALSO RecName: Full=Tyrosine recombinase xerC 2
 gi|17430557|emb|CAD17241.1| probable tyrosine recombinase xerc 2 protein [Ralstonia
           solanacearum GMI1000]
          Length = 347

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 48/301 (15%), Positives = 99/301 (32%), Gaps = 35/301 (11%)

Query: 59  EYINSPRKKPTTLKWLISEYRKSAHWGSL-----AVNSRISFE---SYFDQIIRKSGDFD 110
           +     ++    L  L+      AH+ +L     + ++  +       F     + G   
Sbjct: 2   KPAGPRKRAVDPLAHLVLTRYMEAHFEALLVTGYSADTVRARRISIRRFIVWCEERGIAQ 61

Query: 111 YRKITTKHIRSGVESR--KHTPSSAIQFLTS-------MRVLFKWAVRQEYVAINPCLSV 161
              +T   +            P+ A   L S       ++  FKW  R+ ++  NP   +
Sbjct: 62  PADVTRAVLERYQRHLFYYRKPNGAPLTLGSQHGALAPLKTWFKWLARENHILYNPASEL 121

Query: 162 ERPKRKTEGIRP-WTKEDMQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216
           + PK      R   + ++++   +        G + R   E L  +G+R  +     +  
Sbjct: 122 DLPKLPKHLPRAILSVQEVEAILAEADPATPYGLRDRAMLELLYSTGIRRMEVAGLALYD 181

Query: 217 LQ--NNIFSIKTQKTGTIITVELPDGFMKLLAM---------TPIGKETFFINNDKQKMN 265
           +     +  ++  K      V +    +  L               +E  F+ +  + ++
Sbjct: 182 VDATRRLAFVRDGKGAKDRVVPVGVRALAWLDRYLLEARPQLIVAEREALFVTDYGEPVS 241

Query: 266 ATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
               +   K     AG+    + H +R   AT   +AGA    L A  G   ++  E YT
Sbjct: 242 PEYVASRVKRYMEFAGIQKPGATHLLRHAMATHMLEAGADVRVLQALLGHAQLNTTEIYT 301

Query: 324 K 324
            
Sbjct: 302 H 302


>gi|65317106|ref|ZP_00390065.1| COG0582: Integrase [Bacillus anthracis str. A2012]
          Length = 272

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 39/261 (14%), Positives = 92/261 (35%), Gaps = 23/261 (8%)

Query: 99  FDQIIRKSGDFDYRKITTKHIRSGVE---SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI 155
              +       D   + T HI+  V+   S     +     + S+R  +K+ V +EYV++
Sbjct: 5   ITYLNEHHEVNDVEDVATFHIKKLVQHQISLGKKANYINTLIKSLRSFYKYLVVEEYVSV 64

Query: 156 NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLAFEFLLYSGLRCSDSCR 211
           N    ++  K   E I+ +T +++ +    +       ++ ++     + +G+R S+   
Sbjct: 65  NIMNKIKLLKEDVEVIKTFTDDEVAKMIEAYDFKTYLNARNKVIIAMFVDTGMRMSELIN 124

Query: 212 AGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL-----------AMTPIGKETFFINND 260
                + +    IK  K      V +     K +               +  + +F++  
Sbjct: 125 LQSSWIYDTSLRIK-GKGSKWRHVPMSLMLKKYMIRYERIKAKYFEKKALEHDNYFLSRA 183

Query: 261 KQKMNATQFSIWFKAKATKAG----VNKSAHGVRKFSATISADAGATAHELMATYGWKTV 316
            + +   Q     K    +AG    +  S H VR ++   +   G   +      G + +
Sbjct: 184 GKPICTVQIENIVKIAGLRAGVREDIRCSPHTVRHYAIQSNLRNGLDLYSCSKIAGHENI 243

Query: 317 DQAETYTKGADRIRLGIKNSR 337
              + Y +G +   +     +
Sbjct: 244 QVTKRYLQGLEMENILEMAQK 264


>gi|326539202|gb|ADZ87417.1| phage integrase [Brucella melitensis M5-90]
          Length = 116

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 50/115 (43%), Gaps = 2/115 (1%)

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290
           + + +     ++L  TP   ET  +    +  +    +         A + K  + HG+R
Sbjct: 1   MFLPITPILSEVLEATPRQGETVLVTAYGEPFSPKSLTGRMADWTASAKLPKGFTLHGLR 60

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345
           K    I A+ GA+  ++M T+G   +  AE YT+ A++ RL      R+  +  +
Sbjct: 61  KTLGKILAEGGASTRQIMDTFGHDDIAHAELYTREAEQARLATDGMSRVVRLKRN 115


>gi|253774276|ref|YP_003037107.1| lambda integrase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253325320|gb|ACT29922.1| lambda integrase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|313848583|emb|CAQ31222.2| enterobacteria phage lambda, integration protein [Escherichia coli
           BL21(DE3)]
          Length = 307

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 51/290 (17%), Positives = 97/290 (33%), Gaps = 17/290 (5%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMS---ALTGSTPKREYINS 63
           LPP +     R+     Y     G+   L          A  +     +G   K      
Sbjct: 12  LPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLTARI 68

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
                 TL   +  Y K      +   + I++ S    I R   D     ITTK I + +
Sbjct: 69  NSDNSVTLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAML 128

Query: 124 ESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
                    +SA    +++   F+ A+ + ++  N   +    K +    R    E ++ 
Sbjct: 129 NGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNHVAATRAAKSEVRRSRLTADEYLKI 188

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE----- 236
           +++  S     RLA E  + +G R  D C      + +    ++  KTG  I +      
Sbjct: 189 YQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTALHI 248

Query: 237 ----LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
               +            +G ET   +  ++ +++   S +F      +G+
Sbjct: 249 DALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGL 298


>gi|182420240|ref|ZP_02951470.1| tyrosine recombinase [Clostridium butyricum 5521]
 gi|237666087|ref|ZP_04526075.1| tyrosine recombinase [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182375938|gb|EDT73529.1| tyrosine recombinase [Clostridium butyricum 5521]
 gi|237659034|gb|EEP56586.1| tyrosine recombinase [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 323

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 38/216 (17%), Positives = 86/216 (39%), Gaps = 17/216 (7%)

Query: 132 SAIQFLTSMRVLFKWA-VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           +  + +  ++  F++  ++   +  + C ++ERPK K +      + +     +  +  +
Sbjct: 96  TRRRKIACLKSFFRFLYLKLHMIDTDLCENLERPKAKPKLPVYLKENECVSLLNNITGRN 155

Query: 191 --QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-----------ITVEL 237
             + R      + +GLR S+ C   +  ++++   +  +                + V L
Sbjct: 156 IVRDRCIITLFINTGLRLSELCSINISSIKDDTLVVLGKGNKERYIYLNESCLSQLEVYL 215

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSAT 295
                K + +    ++  F++  KQ++N              A ++K  SAH +R   AT
Sbjct: 216 RYRSEKYIPIKEGHEDALFLSEQKQRINPRSVENIVVKAVKSACLDKHYSAHKLRHTCAT 275

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330
           +   AGA    +    G ++V   + YT    D+IR
Sbjct: 276 LLYKAGADIRSIQTLLGHESVATTQIYTHVDVDQIR 311


>gi|313901872|ref|ZP_07835292.1| tyrosine recombinase XerD subunit [Thermaerobacter subterraneus DSM
           13965]
 gi|313467865|gb|EFR63359.1| tyrosine recombinase XerD subunit [Thermaerobacter subterraneus DSM
           13965]
          Length = 321

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 41/262 (15%), Positives = 87/262 (33%), Gaps = 22/262 (8%)

Query: 85  GSLAVNSRISFESYFDQII-----RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
             LA ++  ++             R+       +         +E    + ++A + L +
Sbjct: 28  RGLAAHTLAAYRRDLADFAAFAAARQVEPAGVTRPLILAYLHQLERAGRSRATAARRLAA 87

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLA 195
           +R  F++   +  V  +P   +  P+      R    +++++           G + R  
Sbjct: 88  LRGFFRYLASEGKVEHDPAEGMATPRGGRPLPRVLAVDEVERVLELPQPASPAGLRDRAV 147

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLA-------- 246
            E L  +GLR S+     +  L  +   ++   K G    V +    ++           
Sbjct: 148 LELLYATGLRVSELVGLDLDDLLLDHGLLRCRGKGGKERVVPVAAPAVEATRQYLARGRP 207

Query: 247 --MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302
                 G+   F+N    +++        +  A +AGV +  S H +R   AT     GA
Sbjct: 208 ALARRPGQRALFLNQRGGRLSRQWVWHLLRRAARRAGVPRAVSPHTLRHSFATHLLAGGA 267

Query: 303 TAHELMATYGWKTVDQAETYTK 324
               +    G   +   + YT 
Sbjct: 268 DLRAVQELLGHADISTTQIYTH 289


>gi|238765556|ref|ZP_04626468.1| Integrase [Yersinia kristensenii ATCC 33638]
 gi|238696219|gb|EEP89024.1| Integrase [Yersinia kristensenii ATCC 33638]
          Length = 355

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 57/336 (16%), Positives = 116/336 (34%), Gaps = 25/336 (7%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRI---RLPYPHESTFIPAYMSALTGSTPKREYINS 63
           LPP +     R+     Y     G+     R+     +  I A +  +   + +     S
Sbjct: 12  LPPNLY---VRNNGYYSYRDPRTGKEYGLGRIKRDAVNQAIEANLQLMDNVSARLIERIS 68

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
                    WL   Y K      L   +   +      +     +     ITTK I   +
Sbjct: 69  SDSAMLFHDWL-DHYAKIIDARGLKPKTLKEYRCKLRTLHSTIRNVPIDSITTKDIAGVL 127

Query: 124 ESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
                    + A Q    +  +F+ A+ + Y++ NP  + + P+ + +  R    +  + 
Sbjct: 128 TPYIVAGKAAMAKQTRMLLLDIFREAIAEGYISSNPVDATKNPRSEIKRSRLSLDDYKEI 187

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241
           FKS         L+ E  L +G R SD  +     +++ +  ++ QK+G  + +++    
Sbjct: 188 FKSSLKLQPWIPLSMEIALLTGQRVSDISKMKWSDIRDGMLWVEQQKSGAKLALDVNLSL 247

Query: 242 MKLL----------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-----SA 286
             L                G +    +++K +++ T  S  F      +G++      S 
Sbjct: 248 NALGISFNETLIRCKSQFGGCDNLIASHNKLQLSTTAISRGFARARDLSGLSWDKAPPSF 307

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           H +R  SA +  +   +   +    G K+      Y
Sbjct: 308 HELRSLSARLYTEEKGSEF-VQRLLGHKSSIMTAKY 342


>gi|258516772|ref|YP_003192994.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771]
 gi|257780477|gb|ACV64371.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771]
          Length = 389

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 52/343 (15%), Positives = 109/343 (31%), Gaps = 54/343 (15%)

Query: 52  TGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFD 110
           +    K +YI   +    T K    ++ +S     LA  +   ++   + +I+   G   
Sbjct: 50  SAEVQKGQYIAPSKL---TFKEFSQKWLESK--KDLAPKTLYRYKEILNSRILPAMGHLK 104

Query: 111 YRKITTKHIRSGVESRKH------------TPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158
              I   HI     + +             +P++ +     +  +F  AV+ + +  NP 
Sbjct: 105 IEDIKPFHIMQFYGNLQEPGIREDGKEGTLSPATVLYHHRLLTNIFNAAVKWQIILTNPA 164

Query: 159 LSVERPKRKTEGIRPWTKEDMQQFKSFWSE-GSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217
           L VE PK K      + +ED     S   E   + +      L  GLR  +      + +
Sbjct: 165 LRVEAPKAKKHKATSYEEEDTAALLSALEEQPLKFQAIVYIALGCGLRRGEIMGLEWKDI 224

Query: 218 QN--NIFSIKTQ--------------KT-GTIITVELPDGFMKLLA---------MTPIG 251
                   ++                K   +   + +P   M LL             +G
Sbjct: 225 DLTKGTLEVRQSSQYLPGHGTFAKSPKNESSERIIAVPTETMSLLKQHRVQQNEQRLQVG 284

Query: 252 K-----ETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAH 305
                 +  F   D + M+    + WF        +     HG+R  +A+    AG    
Sbjct: 285 GLWQASDRLFTTWDGKPMHPDSITKWFSGFLKNNNLSPLPFHGLRHTAASYMIKAGIPLK 344

Query: 306 ELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVVDSDD 347
            + +  G  + +     Y        +  + + +++ ++ +  
Sbjct: 345 NIASRLGHSSPNTTLNIYAHS--FKSVDAEAANKMNDILTTRK 385


>gi|227504796|ref|ZP_03934845.1| site-specific tyrosine recombinase XerC [Corynebacterium striatum
           ATCC 6940]
 gi|227198646|gb|EEI78694.1| site-specific tyrosine recombinase XerC [Corynebacterium striatum
           ATCC 6940]
          Length = 299

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 41/271 (15%), Positives = 87/271 (32%), Gaps = 21/271 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE---SRKHTPSSAIQFLTSMR 141
              +  +   + S    + R   D  +       +R+ +    ++  + ++  +   + R
Sbjct: 27  RGRSAATVKGYRSDLRDLARSVPD--FASFDLNALRAWLGEAVAQGKSRATLARRTAAAR 84

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR-----LAF 196
               WAVR+ ++  +    +  PK      +     +  +     +   +          
Sbjct: 85  AFSTWAVREGHLQADVAARLVSPKVGKHLPKVLAATEAGELVGNAASHDEVHFLRDSAML 144

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPDGFMKLLAM-------- 247
           E L  +G+R ++     V  L  +   ++ T K      V   D     LA         
Sbjct: 145 ELLYATGMRVAELVGLDVGDLDLHRRTALVTGKGNKQRVVPFGDAASDALATWIEKGRLQ 204

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAG-VNKSAHGVRKFSATISADAGATAHE 306
                +  F+     +++  Q     +  A   G    + HG+R  +AT   + GA    
Sbjct: 205 LAGDTDAVFVGTRGGRIDQRQVRRVVEKAAQITGATGLTPHGLRHTAATHLLEGGADLRV 264

Query: 307 LMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
           +    G  ++   + YT      RL    SR
Sbjct: 265 VQELLGHSSLQTTQVYTH-VSAKRLKDAYSR 294


>gi|332112212|gb|EGJ12188.1| tyrosine recombinase XerC subunit [Rubrivivax benzoatilyticus JA2]
          Length = 313

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 43/270 (15%), Positives = 88/270 (32%), Gaps = 31/270 (11%)

Query: 85  GSLAVNSRISFESYFDQI--IRKSGDFDYRKITTKHIRSGVESRK---HTPSSAIQFLTS 139
             LA  +   +     ++     +   + R     H+R  +   +     P S    L++
Sbjct: 20  RRLAPRTLALYRDALGRLAASAAADGVELRAAQPHHVRRWMAQLRTAGLAPRSIALVLSA 79

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA---- 195
            R L++W  R+  V  NP   ++ PK      +    +         +E    RLA    
Sbjct: 80  WRGLYRWWGREGLVPANPVDGLKAPKTGKPLPKALPVDQAVALAEHENEDGDARLAARDH 139

Query: 196 --FEFLLYSGLRCSDSCRA---------GVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
              E L   GLR  +             G    ++    +   K     +V +    ++ 
Sbjct: 140 AIVELLYGCGLRIGELLALDLAPSAGAAGWIDAEDASAHV-LGKGRKRRSVPVGAKALEA 198

Query: 245 LAM--------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294
           LA            G+   F++   ++++        K  A +AG+  +   H +R   A
Sbjct: 199 LAAWLAVRGQLAAAGEPALFVSRRGERLSQGALRARLKQIALQAGLPTHVHPHMLRHSYA 258

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324
           +    +      +    G  ++   + YT+
Sbjct: 259 SHLLQSSGDLRAVQELLGHASISTTQVYTQ 288


>gi|332042981|gb|EGI79179.1| integrase family protein [Lacinutrix algicola 5H-3-7-4]
          Length = 296

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 42/276 (15%), Positives = 93/276 (33%), Gaps = 21/276 (7%)

Query: 70  TLKWLISEYRKSAHWGSLA-VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-- 126
           +LK  +       ++  L         E++   + +       +      IRS +     
Sbjct: 2   SLKAFVDYLELERNYSQLTIKAYSKDIEAFQKYLKKNHETTTIKTANYSQIRSWIVQLVE 61

Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
            K +  +  + ++++   +K+ ++ E +  NP    +  K   +   P+++ ++      
Sbjct: 62  SKISNRTINRKISALNTYYKFLLKIEQLKTNPLAKHKALKTSKKIQVPFSQTEVAMAIDD 121

Query: 186 WSE-----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPD 239
                   G + +L  E    +G+R  +     ++ +     ++K   K      V L D
Sbjct: 122 LQHENNFKGLRNKLIIELFYSTGIRRIELVNLKIKDINQANKTLKVLGKRNKERYVPLLD 181

Query: 240 GFMKLLA---------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKA--GVNKSAHG 288
              K +               +E  F+     K+  T          + A   V KS H 
Sbjct: 182 SVNKTINQYIEKRQELKNIKDQEYLFLTKRGVKIYETLVYRIINEYFSLASNKVKKSPHI 241

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +R   AT   + GA  + +    G  ++   + YT 
Sbjct: 242 LRHSFATHLLNQGADLNAVKELLGHSSLAATQVYTH 277


>gi|71905836|ref|YP_283423.1| tyrosine recombinase XerC subunit [Dechloromonas aromatica RCB]
 gi|71845457|gb|AAZ44953.1| tyrosine recombinase XerC subunit [Dechloromonas aromatica RCB]
          Length = 295

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 36/261 (13%), Positives = 89/261 (34%), Gaps = 21/261 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR---SGVESRKHTPSSAIQFLTSMR 141
             L+ ++  ++     +++  +GD     +   H+R   + +  +     S  + L++ R
Sbjct: 15  RRLSAHTVSNYRRDLQKLLAAAGDIPLASLQVHHLRRFVAQLHGQGLAGRSLARALSAWR 74

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-----GSQPRLAF 196
             F W   +  V  NPC  +  PK      +  + ++  +      +      ++    F
Sbjct: 75  GFFHWLGERGMVKANPCDGIRPPKSPRMLPKALSVDETSRLLMPVDDDDPVQAARDLAMF 134

Query: 197 EFLLYSGLRCSDSCRAGVQHLQN--NIFSIKT-QKTGTIITVELPDGFMKLLAM------ 247
           E    SGLR ++      + L +  +   ++   K   +  V +     + LA       
Sbjct: 135 ELFYSSGLRLAELVALDCEALDDIAHESEVRVLGKRNKLRLVPVGSKAREALAAWAAVRN 194

Query: 248 --TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGAT 303
                 ++  F+     +++          +A   G+  +   H +R   A+    +   
Sbjct: 195 ELAKPEEKALFVGQRGGRISPRMVEARLARRAVLLGLPTHVHPHMLRHSFASHVLQSSGD 254

Query: 304 AHELMATYGWKTVDQAETYTK 324
              +    G  ++   + YT 
Sbjct: 255 LRAVQEMLGHASIASTQVYTH 275


>gi|95929339|ref|ZP_01312082.1| phage integrase [Desulfuromonas acetoxidans DSM 684]
 gi|95134455|gb|EAT16111.1| phage integrase [Desulfuromonas acetoxidans DSM 684]
          Length = 297

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 47/262 (17%), Positives = 92/262 (35%), Gaps = 22/262 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKS-GDFD------YRKITTKHIRSGVES--RKHTPSSAIQ 135
            +LA +++ ++            G+           +    +R  +    + +   +  +
Sbjct: 16  RNLASHTQTAYLRDVQAFCDFICGEHREQLKTLLPAVEKHTLRRWMAQLLKNNKKVTVAR 75

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----Q 191
            + S+R  + +  RQ +V  NP L V  P+ +         + M        + +    +
Sbjct: 76  KVASIRSFYSFLQRQGHVEHNPALQVRLPRVERYLPTTLDVDYMYHLLDAPGDSTLQSLR 135

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVEL----PDGFMKLLA 246
            R AFE L  SGLR  +     V  L  +   ++   K G    V +        M  L 
Sbjct: 136 DRAAFELLYSSGLRVGELVALNVADLDFDQALVRVLGKGGKQRIVPVGSKALQALMAYLE 195

Query: 247 MTPI--GKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGA 302
              +    E   +N    +++A       K K  + G+    + H +R   AT   D GA
Sbjct: 196 RRGVTERDEPLLVNRQGTRLSARTVQRNLKKKLLQLGLPTTATPHSLRHSFATHLLDEGA 255

Query: 303 TAHELMATYGWKTVDQAETYTK 324
               +    G +++   + YT+
Sbjct: 256 DLRAIQEMLGHQSLSTTQKYTQ 277


>gi|160895946|ref|YP_001561528.1| integrase family protein [Delftia acidovorans SPH-1]
 gi|160361530|gb|ABX33143.1| integrase family protein [Delftia acidovorans SPH-1]
          Length = 412

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 56/305 (18%), Positives = 97/305 (31%), Gaps = 27/305 (8%)

Query: 44  IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-I 102
           +     A            +  +K  T+  L  ++ +         ++R  ++   D+ I
Sbjct: 86  LAQEWLAQVRRGGDPAADKAAARKAPTVTELCVKFMEDHSKQRNKPSTRRGYQGVIDRCI 145

Query: 103 IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA--INPCLS 160
           +   G    + +    +   ++   H P+ A +  + MR +F  A    Y     NPC  
Sbjct: 146 VPFLGRIKVQDVKRPDVAGAMKKMAHKPAEANRAFSVMRKMFNLAEVWGYRPDGTNPCRH 205

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWS-----------EGSQPRLAFEFLLYSGLRCSDS 209
           V       +     + EDM +                      RL FEF      R S+ 
Sbjct: 206 VP-VYPDGKATHLISDEDMGKLFRHLDGIEAEGLENYVIPLAIRLQFEFA----GRRSEI 260

Query: 210 CRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI----NNDKQK 263
                    L N        KTG +    L +   +LL+  P      ++    N+  + 
Sbjct: 261 ISLEWAWVDLDNRRVVWPDSKTGGMSK-PLSEEAYRLLSTAPRRDGCPYVLPSPNDPAKH 319

Query: 264 MNA-TQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           +     +  W +        +   HG+R  SAT  A++G      MA    KTV     Y
Sbjct: 320 LTEGEYYGAWCRILKAAGATHVGTHGIRHRSATDIANSGIPVKVGMALTAHKTVAMFMRY 379

Query: 323 TKGAD 327
               D
Sbjct: 380 VHTED 384


>gi|325280617|ref|YP_004253159.1| Tyrosine recombinase xerC [Odoribacter splanchnicus DSM 20712]
 gi|324312426|gb|ADY32979.1| Tyrosine recombinase xerC [Odoribacter splanchnicus DSM 20712]
          Length = 307

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 70/218 (32%), Gaps = 22/218 (10%)

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           R  T  S  + L+S+R  F++ VR+  +  +P   V  PK             M +    
Sbjct: 76  RPMTARSVRRKLSSLRTYFRYLVREGKLTEDPTEIVVAPKMGKRLPVFVPDYQMDEVLDK 135

Query: 186 WS-----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPD 239
            +        + R+      Y+G+R S+     ++ +      I+   K      V +  
Sbjct: 136 HASDKDFANIRDRMVLMTAYYTGMRRSELVALKLEDVDLEGAVIRVNGKGDKQRIVPMLP 195

Query: 240 GFMKLLAM--------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NKSA 286
                L +             +  F+ +  +     +F   ++      G       +S 
Sbjct: 196 ELAGDLRIYLNKREELVGEKHQFVFVTDKGKP-VYDKF--IYRLAVKYLGEVTSLKKRSP 252

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           H +R   AT   + GA    +    G   +   + YT 
Sbjct: 253 HVLRHSFATALLNNGACIEAIRELLGHAGLAATQIYTH 290


>gi|309751724|gb|ADO81708.1| Site-specific tyrosine recombinase XerC [Haemophilus influenzae
           R2866]
          Length = 295

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 40/260 (15%), Positives = 89/260 (34%), Gaps = 21/260 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRKHTPSSAIQFLT 138
             ++ ++  +++   D  I+     D    T       + I +  + +     S    L+
Sbjct: 16  RQMSPHTITNYQHQLDATIKILAQQDIHSWTQVTPSVVRFILAESKKQGLKEKSLALRLS 75

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS---FWSEGSQPRLA 195
           ++R    + V+Q  + +NP   +  PK+     +    E +QQ  +         + R  
Sbjct: 76  ALRRFLSFLVQQGELKVNPATGISAPKQGRHLPKNMDGEQVQQLLANDSKEPIDIRDRAI 135

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLLA 246
            E +  SGLR S+     +  +   +  ++    G    V          + +       
Sbjct: 136 LELMYSSGLRLSELQGLDLNSINTRVREVRVIGKGNKERVVPFGRYASHAIQEWLKVRAL 195

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATA 304
             P G E  F++    +++        +    + G+N   + H +R   AT   +A +  
Sbjct: 196 FNPKG-EALFVSQLGNRISHRAIQKRLETWGIRQGLNSHLNPHKLRHSFATHMLEASSDL 254

Query: 305 HELMATYGWKTVDQAETYTK 324
             +    G   +   + YT 
Sbjct: 255 RAVQELLGHSNLSTTQIYTH 274


>gi|251793385|ref|YP_003008113.1| site-specific tyrosine recombinase XerC [Aggregatibacter
           aphrophilus NJ8700]
 gi|247534780|gb|ACS98026.1| tyrosine recombinase XerC [Aggregatibacter aphrophilus NJ8700]
          Length = 295

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 35/260 (13%), Positives = 84/260 (32%), Gaps = 21/260 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRKHTPSSAIQFLT 138
             ++ ++  +++    +I+        ++         + + +          S    L+
Sbjct: 16  RQVSPHTLSNYQRQLVRIVEILQHAGIQQWQQVTPSVVRFVIAQSHKDGLHEKSLALRLS 75

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS---FWSEGSQPRLA 195
           ++R    + V+   + +NP   +  PK+     +    E +QQ  +         + R  
Sbjct: 76  ALRRFLSYLVQLGELKVNPATGISAPKQAKHLPKNIDTEQVQQLLANDSKEPIDIRDRAI 135

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLLA 246
            E L  SGLR S+     +  +   +  ++    G    V          +       L 
Sbjct: 136 IELLYSSGLRLSELQGLNLNSINIRVREVRVIGKGNKERVVPLGRYASHAIQQWLKVRLL 195

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSAHGVRKFSATISADAGATA 304
             P   E  F++    +M+     +  +      +   + + H +R   AT   +A +  
Sbjct: 196 FNP-KDEALFVSQLGNRMSHRAIQMRLETWGIRQRLNSHLNPHKLRHSFATHMLEASSDL 254

Query: 305 HELMATYGWKTVDQAETYTK 324
             +    G   +   + YT 
Sbjct: 255 RAVQELLGHSNLSTTQIYTH 274


>gi|83589876|ref|YP_429885.1| tyrosine recombinase XerD subunit [Moorella thermoacetica ATCC
           39073]
 gi|83572790|gb|ABC19342.1| tyrosine recombinase XerD subunit [Moorella thermoacetica ATCC
           39073]
          Length = 313

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 40/264 (15%), Positives = 84/264 (31%), Gaps = 27/264 (10%)

Query: 88  AVNSRISFESYFDQII--------RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
           +  +  ++ +  +Q          +++G         +     +       SS  + L +
Sbjct: 24  SPCTVDAYRADIEQFAAFVAGRAGQEAGPAAVDIWMVRRYLGWLNQLGQQRSSMNRKLAA 83

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK---SFWSEGSQPRLAF 196
           +R  +++ +R   V  +P   +  P+R+       +  +M++     +    G + R   
Sbjct: 84  LRAFYRFLLRAGQVQSSPVALLSGPRREKRLPGCLSHAEMEKLLSIPATTPLGLRDRAIL 143

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-ITVELPDGFMKLL---------- 245
           E L  SG+R ++        L       +    G     V L    +K L          
Sbjct: 144 ETLYASGIRVAELVGMDQDDLDLVAGYARVLGKGRRERVVPLGRYAVKALENYLHRARPE 203

Query: 246 ---AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
                 P      F+N+   ++              KA + +  S H +R   AT   + 
Sbjct: 204 LAARRIPPEPRALFLNHLGGRLTTRGVRERLSHYVEKAALRRGVSPHTIRHTFATHLLEG 263

Query: 301 GATAHELMATYGWKTVDQAETYTK 324
           GA    +    G   +   + YT 
Sbjct: 264 GADLRVVQELLGHIRLATTQIYTH 287


>gi|95928516|ref|ZP_01311263.1| phage integrase [Desulfuromonas acetoxidans DSM 684]
 gi|95135306|gb|EAT16958.1| phage integrase [Desulfuromonas acetoxidans DSM 684]
          Length = 397

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 41/258 (15%), Positives = 89/258 (34%), Gaps = 14/258 (5%)

Query: 101 QIIRKSGDFDYRKITTKHIRSGVESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158
           +II+  G      I+ + +    +      + ++  + L+ +  +FK A+  + +  NPC
Sbjct: 135 RIIKTFGATPLADISKREVMLFHQQVCDETSGTTGNRHLSLLSSIFKLALEYDLLEKNPC 194

Query: 159 LSVERPKRKTEGIRPWTKEDMQQFKSFW--SEGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216
             +++ K      R   +++  +F              A   L+  G+R S+      + 
Sbjct: 195 RGIKKAKENRSRDRFLQEDEYTRFIQVLQTKLDQPSACAIFLLIALGMRKSELLSLRWED 254

Query: 217 LQ--NNIFSIKTQKTGTIITVEL----PDGFMKLLAMTPIGKETFFINNDKQKMN-ATQF 269
           +   +    ++  K G    V L         K+           F +    +       
Sbjct: 255 VSLADRHLHLRDTKNGESRYVALNSVSHGLLTKMKQKRKASNPWVFPSRTSSESGHLQDV 314

Query: 270 SIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-- 326
              F     ++ +     H +R+  A+   +AG     +    G K++   + Y K A  
Sbjct: 315 RRTFATVCRESKITGLRIHDLRRSHASHLLNAGVDISIVGKILGHKSLKSTQIYAKVATS 374

Query: 327 DRIRLGIKNSRRISSVVD 344
              R     SR+I  V++
Sbjct: 375 SLARTSEIASRKIEEVMN 392


>gi|320093555|ref|ZP_08025446.1| recombinase XerD [Actinomyces sp. oral taxon 178 str. F0338]
 gi|319979482|gb|EFW10953.1| recombinase XerD [Actinomyces sp. oral taxon 178 str. F0338]
          Length = 249

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 40/214 (18%), Positives = 75/214 (35%), Gaps = 21/214 (9%)

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----- 186
           S  +   ++R L  +A+RQ  V  +    V  PK+ +   +  + + + +          
Sbjct: 1   SVARASAAIRGLHAYALRQGRVGADAAAEVRAPKQGSHLPKALSVDQVSRLLDAAHSAPG 60

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKT-QKTGTIITVELPDGFMK 243
           + G +     E L  +G R S++    V  +   +    ++   K      V L      
Sbjct: 61  AAGLRDAALLELLYATGARVSEAVGLAVDDIDLDDEAPVVRLFGKGRKERLVPLGSYAKD 120

Query: 244 LL-----------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290
            L           A    G    F+N     M+        +  A+ AG+    S H +R
Sbjct: 121 ALGAYLVRGRPELAARGRGSHAVFLNKRGAAMSRQSAWETIRRAASAAGLEAGVSPHTLR 180

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              AT   + GA+  ++    G  +V   + YT+
Sbjct: 181 HSFATHLLEGGASVRDVQELLGHASVQTTQIYTR 214


>gi|126434558|ref|YP_001070249.1| site-specific tyrosine recombinase XerC [Mycobacterium sp. JLS]
 gi|166918889|sp|A3PXY1|XERC_MYCSJ RecName: Full=Tyrosine recombinase xerC
 gi|126234358|gb|ABN97758.1| tyrosine recombinase XerC subunit [Mycobacterium sp. JLS]
          Length = 300

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 40/268 (14%), Positives = 93/268 (34%), Gaps = 28/268 (10%)

Query: 85  GSLAVNSRISF----ESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT---PSSAIQFL 137
              + ++R ++     S F  +  ++   D   +T   +R+ + ++       ++  +  
Sbjct: 16  RGRSDHTRRAYLGDLRSLFAFVDERTPGADLGSLTLPVLRAWLSAQAAAGTARTTLARRT 75

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW--------SEG 189
           ++++    WAVR+  +A +P   ++ PK +        ++  +                 
Sbjct: 76  SAVKTFTAWAVRRGLMASDPATRLQMPKARRTLPAVLRQDQARDALDAANSGAQQGDPLA 135

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM- 247
            + RL  E L  +G+R S+ C   +  +  +   ++   K     TV   +   + L   
Sbjct: 136 LRDRLIVEMLYATGIRVSELCGLDIDDVDTSRRLLRVLGKGDKQRTVPFGEPAEQALRAW 195

Query: 248 ---------TPIGKETFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSAHGVRKFSATI 296
                    T        +    ++++  Q          A     +   HG+R  +AT 
Sbjct: 196 LTSGRPALATAESGPALLLGARGRRLDPRQARTVVHETVGAVAGAPDIGPHGLRHSAATH 255

Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324
             + GA    +    G  T+   + YT 
Sbjct: 256 LLEGGADLRIVQELLGHSTLATTQLYTH 283


>gi|325511227|gb|ADZ22862.1| site-specific tyrosine recombinase XerC [Clostridium acetobutylicum
           EA 2018]
          Length = 326

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 47/292 (16%), Positives = 91/292 (31%), Gaps = 43/292 (14%)

Query: 85  GSLAVNSRISFESYFDQIIR-----------------KSGDFDYRKITTKHIRSGV---- 123
              +  +R  +++    +++                    D D   I    +        
Sbjct: 19  KGKSKRTRNEYKNDLILMLKYIKVIKYDINTNGIENVDISDIDNDFIKAISLEDLYIFLE 78

Query: 124 ---ESRKHTPSSAIQFLTSMRVLFKWAV-RQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
              + R++   S  + + ++R  F +   +++ +  NP   +E+PK         T    
Sbjct: 79  YCEDERRNGAYSRARKVAAIRSFFNYLTTKKKILDYNPAQELEKPKLPKRNPVYLTIGQA 138

Query: 180 QQFKSFWSEGSQPR---LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
             F S                  L  G+R S+ C   +  ++N++ SI   K     TV 
Sbjct: 139 NTFLSGIKMNKHYYRNTCIVTLFLNCGMRVSELCNININSIKNDMISII-GKGDKERTVY 197

Query: 237 LPDGFMKLLAMTPIG----------KETFFINNDKQKMNATQFSIWFKAKATKAGVN--- 283
           L D  +  +                ++  FI+    +++        K     + +N   
Sbjct: 198 LNDMCIDAINKYIEKERSLQKNIKCQQALFISQKGTRISVRTIENLVKKINEDSKLNINK 257

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIK 334
            + H +R   AT    AG     L    G   V   + YT    DR+R    
Sbjct: 258 LTPHKLRHTFATTMYQAGTDIISLQQLLGHSNVSTTQIYTHVTDDRLREATN 309


>gi|259909796|ref|YP_002650152.1| site-specific tyrosine recombinase XerC [Erwinia pyrifoliae Ep1/96]
 gi|224965418|emb|CAX56950.1| site-specific tyrosine recombinase [Erwinia pyrifoliae Ep1/96]
          Length = 351

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 43/289 (14%), Positives = 102/289 (35%), Gaps = 32/289 (11%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFE---SYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
           TL+ L   +         +  +   +      F       G     +++   + +     
Sbjct: 20  TLRQLAESWLAHLVVAGRSPRTVQGYRERVRAFLAWCEPRGITYAPQVSLAVLEAYQRWL 79

Query: 127 KHTPSSAIQ---------FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI-RPWTK 176
           +    +  +          LT++R+LF+W +++  +  NP   +  PK +     + +++
Sbjct: 80  QGYRRADGKQLVVNSQLGVLTAIRMLFRWLLQRHVILYNPAELLALPKEERRLPAQVFSE 139

Query: 177 ED----MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTG 230
            +    +Q   +    G + R   E L  +G+R ++     +  +     + +++  K G
Sbjct: 140 AETRRVLQSLDAGTPPGLRNRAILELLWSTGIRRTELANLLLSDVDAVRGVVNVRRGKGG 199

Query: 231 TIITVELPDGFMKLLA----------MTPIGKETFFINNDKQKMNATQFSIWF-KAKATK 279
               V + +  +  LA                   FI++    +     +    +A  + 
Sbjct: 200 RDRVVPVGNAALMWLARYLKDVRPRLAQRFDSGHLFISHKGTGLAHGTLTAMAGRAIRSG 259

Query: 280 AGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           A + K+   H  R   AT   + GA    + A  G + ++  + YT+ A
Sbjct: 260 AHLKKAGACHIFRHTMATQMLENGADTRHIQAILGHEKLETTQIYTRVA 308


>gi|15004784|ref|NP_149244.1| site-specific tyrosine recombinase XerC [Clostridium acetobutylicum
           ATCC 824]
 gi|14994396|gb|AAK76826.1|AE001438_79 Site-Specific Recombinase, Xerd [Clostridium acetobutylicum ATCC
           824]
          Length = 323

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 47/292 (16%), Positives = 91/292 (31%), Gaps = 43/292 (14%)

Query: 85  GSLAVNSRISFESYFDQIIR-----------------KSGDFDYRKITTKHIRSGV---- 123
              +  +R  +++    +++                    D D   I    +        
Sbjct: 16  KGKSKRTRNEYKNDLILMLKYIKVIKYDINTNGIENVDISDIDNDFIKAISLEDLYIFLE 75

Query: 124 ---ESRKHTPSSAIQFLTSMRVLFKWAV-RQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
              + R++   S  + + ++R  F +   +++ +  NP   +E+PK         T    
Sbjct: 76  YCEDERRNGAYSRARKVAAIRSFFNYLTTKKKILDYNPAQELEKPKLPKRNPVYLTIGQA 135

Query: 180 QQFKSFWSEGSQPR---LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
             F S                  L  G+R S+ C   +  ++N++ SI   K     TV 
Sbjct: 136 NTFLSGIKMNKHYYRNTCIVTLFLNCGMRVSELCNININSIKNDMISII-GKGDKERTVY 194

Query: 237 LPDGFMKLLAMTPIG----------KETFFINNDKQKMNATQFSIWFKAKATKAGVN--- 283
           L D  +  +                ++  FI+    +++        K     + +N   
Sbjct: 195 LNDMCIDAINKYIEKERSLQKNIKCQQALFISQKGTRISVRTIENLVKKINEDSKLNINK 254

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIK 334
            + H +R   AT    AG     L    G   V   + YT    DR+R    
Sbjct: 255 LTPHKLRHTFATTMYQAGTDIISLQQLLGHSNVSTTQIYTHVTDDRLREATN 306


>gi|320352237|ref|YP_004193576.1| integrase family protein [Desulfobulbus propionicus DSM 2032]
 gi|320120739|gb|ADW16285.1| integrase family protein [Desulfobulbus propionicus DSM 2032]
          Length = 354

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 49/296 (16%), Positives = 101/296 (34%), Gaps = 33/296 (11%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--K 127
           T    +  Y           N++I   +  +++         ++IT   + +  + R   
Sbjct: 68  TFVDALDRYELEVSNRK-RPNTKIRERTSANRLREHFSGLKLKEITPSLVAAFRDKRLKS 126

Query: 128 HTPSSAIQFLTSMRVLF-----KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
             PS+  + L  +  LF     +WA+  +    NP  ++ +P +    +R  +K++ +  
Sbjct: 127 VGPSTVQKDLALLSHLFTIANAEWALDIK----NPVATIRKPAKPDSRLRLLSKDEARHL 182

Query: 183 KSFWSEGSQPRLA--FEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELP 238
                +    +L    + +L++G+R S++         +   I  +   KT     V L 
Sbjct: 183 LETSKQSRNKKLYHFLQLMLHTGMRPSEAAGITWGQIDIDARIIDLTVTKT-KPRRVPLT 241

Query: 239 DGFMKLLAMTPIGK-----ETFFINN-----DKQK--MNATQFSIWFKAKATKAGVNKSA 286
              ++LL      +       F  NN      ++        F    K    +   +   
Sbjct: 242 VKAVELLLELMPDQYEKNSFVFLPNNCSETLRRRPNLFFRRAFWNALKKANIE---DFHM 298

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL-GIKNSRRISS 341
           H +R  +A+    AG     L    G  T+   + YT   D  +L  I     +  
Sbjct: 299 HDLRHTAASYLLMAGVDLRTLADILGHSTMQMVQRYTHLLDDHKLKAIDKIELLGR 354


>gi|330998383|ref|ZP_08322207.1| site-specific recombinase, phage integrase family [Paraprevotella
           xylaniphila YIT 11841]
 gi|329568489|gb|EGG50294.1| site-specific recombinase, phage integrase family [Paraprevotella
           xylaniphila YIT 11841]
          Length = 391

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 66/374 (17%), Positives = 119/374 (31%), Gaps = 54/374 (14%)

Query: 19  GKIIYY---FRKGHGRRIRL-----PYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
           G+   Y   +R GH     L     P   + +      +     T  R+ +   +K P  
Sbjct: 24  GRRSIYLDCYRNGHRSYEYLKLYLVPETDDKSLRLNEAAMRKAETACRKKLRELKKLPAE 83

Query: 71  LKWL------ISEYRKS-AHWGSLAVNSRISFESY----FDQIIRKS-----GDFDYRKI 114
            + L      IS    S   W S     + S   +     D++         GD    +I
Sbjct: 84  NRRLMDTQDCISNKGISILEWLSRFKEIQRSRGVHDIHAIDRLCAILSEMNCGDTKVNEI 143

Query: 115 TTKHIRSGVESRK----------HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV--- 161
                 + VE  K            P +A     +       A+R+  +  NP   +   
Sbjct: 144 GKDFCIAFVEYLKTGYKTAKGENLKPKTAFNRQCTFVTALNVAMREGIIPTNPMNLLSHH 203

Query: 162 ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN- 220
           ER K         T +++++  +   + +  + A+ F    GLR  D  +     +  + 
Sbjct: 204 ERAKASKGKRDYLTIDEVKRLIATPCKNNMIKNAYLFACNCGLRLGDVRKLKWGDITQDN 263

Query: 221 ---IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET-----FFINNDKQKMNATQFSIW 272
              I S+   K+G  I + L     + +       +       F +        +  +  
Sbjct: 264 DRWILSVIMNKSGKPIHIPLGVQARRWIPGCEDSGKHDTGSLVFEHLPGD----SHINDI 319

Query: 273 FKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
            K  A  AG+ KS   H  R   AT+    GA  + +    G   +   + Y +  +R +
Sbjct: 320 LKIWAADAGIAKSVTYHTARHTFATMLLTLGADLYTVSKLLGHSQIKNTQIYAEIINRRK 379

Query: 331 LGIKNSRRISSVVD 344
              +    I  V D
Sbjct: 380 --DEAVNLIDKVFD 391


>gi|291526988|emb|CBK92574.1| Site-specific recombinase XerD [Eubacterium rectale M104/1]
          Length = 280

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 42/263 (15%), Positives = 96/263 (36%), Gaps = 22/263 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK---HTPSSAIQFLTSMR 141
            +L  ++  ++ +     +  +   D   +TT  +   +  +K    +P +   + + +R
Sbjct: 16  RNLKDSTIHAYCTSVAHFLNHTA-KDIDALTTDDVDIFLTEKKLSGISPETYNHYHSGIR 74

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201
             +K  +++ +   +    + R KR  +     TK ++           + +     +  
Sbjct: 75  FFYKKILKKNWDDDD----IPRMKRDRKLPTVLTKTEISAILDATP-NLKHKAMIATMYS 129

Query: 202 SGLRCSDSCRAGVQHLQN--NIFSIKTQKTGTIITVELPDGFMKLL------AMTPIGKE 253
            GLR S+        +        I+  K+ +     L D  +++L         P G  
Sbjct: 130 GGLRVSEVTHLHYDDISRTKKNIHIRDGKSRSDRYTLLADRTLEILTEYWFQCGRPRG-- 187

Query: 254 TFFINND-KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMAT 310
             F ++     +       +F+  A +AG+ K  S H +R   A+   ++G     + A 
Sbjct: 188 ILFPSSWTGDYLTKDSVIQFFRESAKRAGIQKHVSTHCLRHSFASHLFESGCDVKYIQAL 247

Query: 311 YGWKTVDQAETYTKGADRIRLGI 333
            G +     E Y   +++  LGI
Sbjct: 248 LGHRDPKSTEVYLHVSNKTLLGI 270


>gi|291514360|emb|CBK63570.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
          Length = 368

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 50/301 (16%), Positives = 111/301 (36%), Gaps = 33/301 (10%)

Query: 46  AYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK 105
            Y+  +  +  K+  I        T   L+  Y  +              + + D+I  +
Sbjct: 87  EYIQLVAANKLKQGRIGI----KGTFDTLV--YHLT--------------KYHGDKIALQ 126

Query: 106 SGDFDYRKITTKHIRSGVESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162
             D  Y K   +++ + +          SS     TS++++   A++ E V  +P  SV+
Sbjct: 127 DIDIRYVKGFVQYLSTAIARTSGEVLKSSSQHNIYTSLKIIIHQAIKDELVTSDPTKSVD 186

Query: 163 RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----Q 218
            P+         T+E++++           + +F F  ++GLR SD  +   + +     
Sbjct: 187 PPRMVLPHKEHLTEEELKRLIQTPCPKEMVKRSFLFCCFTGLRISDVQKLIWKEVVTTNN 246

Query: 219 NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKAT 278
               + + +KT     V L +     +++ P  +E    ++       +      K   +
Sbjct: 247 ETYINFRQKKTKIENYVPLSE---NAISVLPSKRENTETDSVFDLPKESTIRKVLKKWVS 303

Query: 279 KAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR-IRLGIKN 335
            +G++K  + H  R   AT+  ++G   + +    G   +     Y K  D+  R  + +
Sbjct: 304 DSGIDKHITFHCARHTCATLLLNSGVDIYTVKEILGHTDIGTTMQYAKVVDKTKREAVNS 363

Query: 336 S 336
            
Sbjct: 364 I 364


>gi|27804830|gb|AAO22873.1| integrase [Myxococcus xanthus]
          Length = 209

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 36/184 (19%), Positives = 62/184 (33%), Gaps = 18/184 (9%)

Query: 165 KRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220
           +   +     T E+++Q  +   E    G + +   E L  +GLR S+ C  G+  +Q  
Sbjct: 1   RSARKLPSFLTLEEVEQLLAAPDERTSTGVRDKAMLEVLYATGLRVSELCGLGINDVQLT 60

Query: 221 IFSIKTQKTG-TIITVELPDGFMKLLAM----------TPIGKETFFINNDKQKMNATQF 269
              +  +  G     V L    ++ +                 +  F+           F
Sbjct: 61  AGYLVAKGKGAKERLVPLGSVAIEKVQAYLAESRPAVLGRRKSQALFVTPRGSGFTRQGF 120

Query: 270 SIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
               K  A KAG+    S H +R   AT   + GA    +    G   +   + YT   +
Sbjct: 121 WKLLKRYALKAGILKPLSPHKLRHSFATHLVERGADLRAVQQMLGHADLATTQIYTH-VN 179

Query: 328 RIRL 331
             RL
Sbjct: 180 AARL 183


>gi|304412533|ref|ZP_07394139.1| tyrosine recombinase XerC [Shewanella baltica OS183]
 gi|307307192|ref|ZP_07586930.1| tyrosine recombinase XerC [Shewanella baltica BA175]
 gi|304349175|gb|EFM13587.1| tyrosine recombinase XerC [Shewanella baltica OS183]
 gi|306910431|gb|EFN40862.1| tyrosine recombinase XerC [Shewanella baltica BA175]
          Length = 306

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 32/271 (11%), Positives = 89/271 (32%), Gaps = 21/271 (7%)

Query: 72  KWL--ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-FDYRKITTKHIR---SGVES 125
           +WL     Y  +     L+ ++  ++    ++      +      ++ +H +   + +  
Sbjct: 14  QWLQTFERYLSTER--QLSAHTVRNYLYELNRGSDLLPEGVHLLNVSREHWQQVLAKLHR 71

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +  +P S    L++++   ++ +R+  + +NP   +  PK+     +    + +      
Sbjct: 72  KGLSPRSLSLCLSAVKQWGEFLLREGVIELNPAKGLSAPKQAKPLPKNIDVDAISHLLDI 131

Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT--------IIT 234
                   + +   E    SGLR ++     +  +Q ++  ++    G          + 
Sbjct: 132 EGTDPLSLRDKAMMELFYSSGLRLAELAALNLSSVQYDLKEVRVLGKGNKERIVPVGRLA 191

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSAHGVRKF 292
           +     ++      P      F+    ++++                  V    H +R  
Sbjct: 192 IAALLNWLNCRKQIPCEDNALFVTEKGKRLSHRSIQARMAKWGQEQALSVRVHPHKLRHS 251

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYT 323
            AT   +A A    +    G   +   + YT
Sbjct: 252 FATHMLEASADLRAVQELLGHANLATTQIYT 282


>gi|291524090|emb|CBK89677.1| Site-specific recombinase XerD [Eubacterium rectale DSM 17629]
          Length = 280

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 42/263 (15%), Positives = 96/263 (36%), Gaps = 22/263 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK---HTPSSAIQFLTSMR 141
            +L  ++  ++ +     +  +   D   +TT  +   +  +K    +P +   + + +R
Sbjct: 16  RNLKDSTIHAYCTSVAHFLNHTA-KDIDALTTDDVDIFLTEKKLSGISPETYNHYHSGIR 74

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201
             +K  +++ +   +    + R KR  +     TK ++           + +     +  
Sbjct: 75  FFYKKILKKNWDDDD----IPRMKRDRKLPTVLTKTEISAILDATP-NLKHKAMIATMYS 129

Query: 202 SGLRCSDSCRAGVQHLQN--NIFSIKTQKTGTIITVELPDGFMKLL------AMTPIGKE 253
            GLR S+        +        I+  K+ +     L D  +++L         P G  
Sbjct: 130 GGLRVSEVTHLHYDDISRTKKTIHIRDGKSRSDRYTLLADRTLEILTEYWFQCGRPRG-- 187

Query: 254 TFFINND-KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMAT 310
             F ++     +       +F+  A +AG+ K  S H +R   A+   ++G     + A 
Sbjct: 188 ILFPSSWTGDYLTKDSVIQFFRESAKRAGIQKHVSTHCLRHSFASHLFESGCDVKYIQAL 247

Query: 311 YGWKTVDQAETYTKGADRIRLGI 333
            G +     E Y   +++  LGI
Sbjct: 248 LGHRDPKSTEVYLHVSNKTLLGI 270


>gi|254994614|ref|ZP_05276804.1| integrase/recombinase [Anaplasma marginale str. Mississippi]
          Length = 267

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 39/256 (15%), Positives = 91/256 (35%), Gaps = 29/256 (11%)

Query: 109 FDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168
            D      +     + SR ++P++  + ++++R L+ +      +  +P  +++  K   
Sbjct: 2   VDASAADLRAYVRSLNSRGYSPATVARRISAIRGLYGFLYGDRIIDGDPAANLDSCKLGR 61

Query: 169 EGIRPWTKEDMQQFK-----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----- 218
              +  T +++ +           EG +       L  SG+R S+    G   ++     
Sbjct: 62  PLPKVLTVDEVDKLLCAAGSDLSVEGRRTAAIVNILYSSGVRISELINLGFYDIESMLKE 121

Query: 219 ---NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM----------- 264
              +    +   K G    + L +  +  +      ++ F +    +             
Sbjct: 122 QRSDVGHLVIKGKAGRERLILLNEVAIASIVAYLAVRDHFIVGQKSESRWLFPGAKFDQC 181

Query: 265 -NATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
            +  +     KA A  AGV+    S H +R   AT   + G+    +    G  ++   +
Sbjct: 182 ISRQRVGQLLKALAIVAGVDPKRISPHKLRHSFATHLLNNGSNVVFIQKMLGHASLSTTQ 241

Query: 321 TYTKGA-DRIRLGIKN 335
            YT  A DR++  ++ 
Sbjct: 242 IYTYVANDRLKEALQT 257


>gi|256587797|gb|ACU98929.1| integrase [Propionibacterium jensenii]
          Length = 305

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 38/275 (13%), Positives = 88/275 (32%), Gaps = 28/275 (10%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA------IQFLTS 139
             +  +  ++ +  + +   + D    ++    + +          +A       +   S
Sbjct: 23  RRSPRTVTAYRTDLESLFDHAADNGVTRLAEIDVSALRSWLADGRGAAEAPATLQRHWAS 82

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---------SEGS 190
            RV F+WA  +  + ++P   ++  K      R    +  ++               +G+
Sbjct: 83  ARVFFRWACAEGLIGVDPAARLKAAKVPRRLPRTLGVDQARRLLDDAVASASTDDSPQGA 142

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM-- 247
           +     E L  SG+R  + C   +  L     +++   K     TV L D   + +    
Sbjct: 143 RDAAILEVLYGSGIRVGELCGLDLSSLDRARDTLRVLGKGSKERTVPLGDPGWRAIDGWL 202

Query: 248 -------TPIGKETFFINNDKQKMNATQFSIWFKAKATK--AGVNKSAHGVRKFSATISA 298
                  T    +  F+     +++                   +   HG+R   AT   
Sbjct: 203 SRRSEWQTASSGQALFLGARGARIDPRVVRRMVHQHLRSEPGFPDLGPHGLRHAMATHLL 262

Query: 299 DAGATAHELMATYGWKTVDQAETYTK-GADRIRLG 332
           + GA    +    G +++   + YT    +R+R  
Sbjct: 263 EGGADLRTVQEILGHESLATTQIYTHVSTERLRRA 297


>gi|221195834|ref|ZP_03568887.1| tyrosine recombinase XerD [Atopobium rimae ATCC 49626]
 gi|221184308|gb|EEE16702.1| tyrosine recombinase XerD [Atopobium rimae ATCC 49626]
          Length = 311

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 40/266 (15%), Positives = 82/266 (30%), Gaps = 23/266 (8%)

Query: 85  GSLAVNSRISFESYFDQIIR------KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLT 138
             L+ N+  ++E   +                  +   +   + +      P+S  +   
Sbjct: 18  RGLSHNTLDAYERDLNGYSDWLSSCGIHNPCAVTQQILETYIAELREIGLAPASVERHTA 77

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFWSEGSQPRL 194
           ++R   ++ V ++  A +P   +    R        ++E     + Q       G + + 
Sbjct: 78  AIRNFHRFLVAEQICATSPADDLSSTARPLRLPDVISREKAAELLDQPFERSPRGIRDKA 137

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGK- 252
             E L   GLR S+     V+ +  +   ++   K      V +     + L     G  
Sbjct: 138 ILEVLYGCGLRVSEVSGLEVRGVLLDEELLRVFGKGSKERVVPIFGTAQEALREYLEGAR 197

Query: 253 ---------ETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGA 302
                       F+N    +++         A     G+ N   H +R   AT   + GA
Sbjct: 198 GAFLIHGQSPYVFLNRRGGRLSRQWIHTSVAAYGRAVGIENLHPHTLRHSFATHLLEGGA 257

Query: 303 TAHELMATYGWKTVDQAETYTKGADR 328
               +    G   +   + YT   DR
Sbjct: 258 DLRSVQELLGHVDISTTQLYTH-VDR 282


>gi|89902211|ref|YP_524682.1| phage integrase [Rhodoferax ferrireducens T118]
 gi|89346948|gb|ABD71151.1| phage integrase [Rhodoferax ferrireducens T118]
          Length = 337

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 44/294 (14%), Positives = 89/294 (30%), Gaps = 43/294 (14%)

Query: 73  WLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK--HIRSGVESRKHT 129
            L+  Y +       LA  +   +     ++ +++       +  +  HIR  V      
Sbjct: 20  DLVERYLEHVRVEKRLAQRTVELYALDLQKLSQQAAQAGVELLQVQNSHIRRWVAQMNAG 79

Query: 130 PSS---AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             S       L+  R  + W  R+  ++ NP   V  PK      +  + +   Q  SF 
Sbjct: 80  GRSGRGIALILSGWRGFYVWLGREGLISSNPVQDVRAPKAGKPLPKALSVDQAVQLASFA 139

Query: 187 S------EGSQPRLAFEFLLYSGLRCSDSCRA---------GVQHLQNNIFSIKTQKTGT 231
           S        ++     E L  +GLR  +             G   LQ     +   K G 
Sbjct: 140 SGSNDPWLEARDAAMVELLYGAGLRVGELTGLDTVASSSARGWIDLQGGEAHV-LGKGGK 198

Query: 232 IITVE--------LPDGFMKLLAMTPIGKE-----------TFFINNDKQKMNATQFSIW 272
             +V         +              K              F+  +  +++A      
Sbjct: 199 RRSVPVGAKAVLAITHWLALRDQALAQAKPGLQGPGGNAQAALFMGRNGTRLSAQSIWQR 258

Query: 273 FKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            + ++ +AG+      H +R   A+    + +    +    G  ++   + YT+
Sbjct: 259 LRQRSLQAGLTTPVHPHMLRHSFASHLLQSSSDLRAVQELLGHASITTTQAYTR 312


>gi|49084748|gb|AAT51227.1| PA5280 [synthetic construct]
          Length = 304

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 39/288 (13%), Positives = 96/288 (33%), Gaps = 24/288 (8%)

Query: 85  GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIR---SGVESRKHTPSSAIQFLT 138
             ++ ++   +     +I+    K+G  D+  + T+ +R   + +  +  +  S  + L+
Sbjct: 16  RQVSAHTLDGYRRDLLKILALAEKAGLSDWNALDTRSLRTFVARLHQQGQSSRSLARLLS 75

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRL 194
           + R L+++ +R+     +P   +  PK   +  R    +   Q      E      + + 
Sbjct: 76  ATRGLYQYLLREGRCRHDPANGLSAPKSPRKLPRTLDADRALQLLDGAVEDDFIARRDQA 135

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-VELPDGFMKLLAM------ 247
             E    SGLR S+     ++ L      ++ +  G  +  + +     + L        
Sbjct: 136 LLELFYSSGLRLSELVGLDLEWLDLKEGLVRVRGKGNRVRELPVGKAARQALEAWLPLRT 195

Query: 248 -TPIGKETFFINNDKQKMNATQFSIWFKAK-ATKAGVNKSAHGVRKFSATISADAGATAH 305
                    FI    +++      +  +     + G     H +R   A+   ++     
Sbjct: 196 QAAPEDGAVFIGRSGKRLTPRAIQLRVRQAGVRELGQRLHPHMLRHSFASHLLESSGDLR 255

Query: 306 ELMATYGWKTVDQAETYT-----KGADRIRLGIKNSRRISSVVDSDDP 348
            +    G   +   + YT       A         ++R  +    +DP
Sbjct: 256 AVQELLGHADIATTQIYTHLDFQHLASVYDRAHPRAKRKGNADGGNDP 303


>gi|73663256|ref|YP_302037.1| integrase [Staphylococcus saprophyticus subsp. saprophyticus ATCC
           15305]
 gi|72495771|dbj|BAE19092.1| integrase [Staphylococcus saprophyticus subsp. saprophyticus ATCC
           15305]
          Length = 349

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 40/290 (13%), Positives = 96/290 (33%), Gaps = 17/290 (5%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK-- 127
           T      ++ +      ++ +++  +ES +  I         + I     +  +      
Sbjct: 60  TFADYFYQWYEVNKLPHVSESTKRHYESAYKHIKDHFRHKLLKDIKRTEYQKFLNEYGLT 119

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE---RPKRKTEGIRPWTKEDMQQFKS 184
           H+  +  +  + +R  F  A+ + YV  NP    E       KTE ++   + + ++ K 
Sbjct: 120 HSYETIRKLNSYIRNAFDDAIHEGYVIKNPTYKAELHASVPAKTEEMKFINESEFKKLKH 179

Query: 185 FWS-EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPD-- 239
           ++  + +   L     L +G R S+  +   + L   NN   ++  KT T   +   D  
Sbjct: 180 YFEQKNTTSSLVLLVALTTGGRFSEIAKLKREDLDIKNNKIHLRGTKTETSDRIISIDTV 239

Query: 240 ---GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSAT 295
                   +   P     +    D + +     +   +       + + + H +R    +
Sbjct: 240 TMKRIQSFIDSRPTNISGYIFTVDGKTITNAAVNKVLRKACANLNIKEITIHSLRHSFCS 299

Query: 296 ISADAGATAHELMATYGWKTVDQAE-TYTKGADR--IRLGIKNSRRISSV 342
           I    G +   +    G       +  Y+        R   K  + + ++
Sbjct: 300 ILIHHGFSILYISKHLGHSNPATTQSIYSHLLQETYEREDEKAMKLLETI 349


>gi|301169393|emb|CBW28993.1| site-specific tyrosine recombinase [Haemophilus influenzae 10810]
          Length = 295

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 39/260 (15%), Positives = 88/260 (33%), Gaps = 21/260 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRKHTPSSAIQFLT 138
             ++ ++  +++   D  I+     D    T       + I +  + +     S    L+
Sbjct: 16  RQMSPHTITNYQHQLDATIKILAQQDIHSWTQVTPSVVRFILAESKKQGLKEKSLALRLS 75

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS---FWSEGSQPRLA 195
           ++R    + V+Q  + +NP   +  PK+     +    E +QQ  +         + R  
Sbjct: 76  ALRRFLSFLVQQGELKVNPATGISAPKQGRHLPKNMDGEQIQQLLANDSKEPIDIRDRAI 135

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLLA 246
            E +  SGLR S+     +  +   +  ++    G    V          + +       
Sbjct: 136 LELMYSSGLRLSELQGLDLNSINTRVREVRVIGKGNKERVVPFGRYASHAIQEWLKVRAL 195

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATA 304
             P   E  F++    +++        +    + G+N   + H +R   AT   +A +  
Sbjct: 196 FNP-KDEALFVSQLGNRISHRAIQKRLETWGIRQGLNSHLNPHKLRHSFATHMLEASSDL 254

Query: 305 HELMATYGWKTVDQAETYTK 324
             +    G   +   + YT 
Sbjct: 255 RAVQELLGHSNLSTTQIYTH 274


>gi|229162527|ref|ZP_04290488.1| hypothetical protein bcere0009_32990 [Bacillus cereus R309803]
 gi|228621006|gb|EEK77871.1| hypothetical protein bcere0009_32990 [Bacillus cereus R309803]
          Length = 304

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 47/291 (16%), Positives = 93/291 (31%), Gaps = 26/291 (8%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR----KSGDFDYRKITTKHIRSGVESR 126
           L+ +I EY            +  +      Q+ R    + G  +   I   H++  V ++
Sbjct: 3   LEDVIEEYLYHCLAKGFTPKTMKNKRQEMKQLKRFLMDEKGISELEDINPLHLKQYVRTK 62

Query: 127 ---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----M 179
                 P S +     +R  F W  ++EY+  N    VE PK   + ++ +T ++    +
Sbjct: 63  HKEGLQPQSIVSMFKMVRAFFSWCQKEEYLKGNIAKKVELPKVPKKLLKGFTIQEVSAMI 122

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239
             F       ++ +     L   GLR  +      Q+++     +  +     I + +  
Sbjct: 123 DAFSYKNYIEARNKAIVAMLSDCGLRAMEVRGLLTQNVKETTILVNGKGNKERI-MFISP 181

Query: 240 GFMKLLAM-----------TPIGKETFFINNDKQKMNATQFSIWFKAKATK---AGVNKS 285
              K+L               +  + +F++     ++        K    +     V  S
Sbjct: 182 PLKKILIRYERLRKQYLKDKIVKTDNYFLSYTADPLSHMGIYNVIKEAGKRVEVEEVRCS 241

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
            H  R F A      G     L    G   V   + Y +  +   L  K  
Sbjct: 242 PHTFRHFFAVQCILNGIDIFTLSKLLGHSDVSTTQRYLQSLEDFELIKKAM 292


>gi|134297261|ref|YP_001120996.1| site-specific tyrosine recombinase XerC [Burkholderia vietnamiensis
           G4]
 gi|134140418|gb|ABO56161.1| tyrosine recombinase XerC [Burkholderia vietnamiensis G4]
          Length = 306

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 47/284 (16%), Positives = 88/284 (30%), Gaps = 32/284 (11%)

Query: 71  LKWLISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--- 126
           L   I+ Y  +  H   L+ ++   +    D++ + +       +T   +R  V      
Sbjct: 2   LDDPIAAYLSNLKHVRQLSEHTLRGYTHELDELKKLAAGRPLETLTATDVRGAVARAHAG 61

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQF 182
             +  S    L++ R  ++W   +  +  NP  +V  PKR     +  + +D    M   
Sbjct: 62  GLSARSISHRLSAWRAFYRWLALRIEMPANPVAAVRAPKRPKTLPKALSVDDASALMDAP 121

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRA-------------GVQHLQNNIFSIKTQKT 229
               +EG +     E    SGLR ++                 G   L     +++  K 
Sbjct: 122 LPDTTEGIRDHAILELFYSSGLRLAELVGLDAMYTQADGYRSAGWLDLAEAEVTVR-GKG 180

Query: 230 GTIITVELPDGFMKLLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281
                V +    +  L                  F++    +M         K  A  AG
Sbjct: 181 NKERKVPVGRKAIAALNAWLAVRGEFVKHDPHPLFLSVRGNRMAPGVVRERVKRAALSAG 240

Query: 282 VNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           +      H +R   AT    +      +    G  +V   + YT
Sbjct: 241 IPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASVAATQIYT 284


>gi|312111963|ref|YP_003990279.1| integrase [Geobacillus sp. Y4.1MC1]
 gi|311217064|gb|ADP75668.1| integrase family protein [Geobacillus sp. Y4.1MC1]
          Length = 384

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 50/316 (15%), Positives = 104/316 (32%), Gaps = 47/316 (14%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
           +W  + Y+++       + +  S E    + I++        +ITT  I S    +    
Sbjct: 74  RWFNTSYKRTVE-----ITTAKSREYVIRNHIMKYFQHKKINEITTFDIDSFYVDKLDNG 128

Query: 131 SSAIQFLTS---MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            S          +   F  AV+   V +NP  + + PK K+E    WT +++ +F +   
Sbjct: 129 YSGAYIRQMHNLLNQAFDQAVKWSLVKVNPVKNAKPPKVKSEEKITWTVDEVNRFLNLIK 188

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----------------NNIFSIKTQKT-G 230
             S   + +   +++G+R  +        +                       K  KT  
Sbjct: 189 -NSSMEIPYLLAIFTGMRRGEVLGLKWDDVDFENKKIRIKRSLCFVSGKGLIFKEPKTKK 247

Query: 231 TIITVELPDGFMKLLAMTPIGKE--------------TFFINNDKQKMNATQFSIWFKAK 276
           +   + +    + +L      +E                   +D + ++       F   
Sbjct: 248 SKRQISISQHVVNILKKHKQKQEFQKEKLGTQYQDNNLIVCTDDGKPLDPRNLLRQFYRL 307

Query: 277 ATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIK 334
             +A V + S H +R   ATI    G     +    G   V    + Y+  +D   L  +
Sbjct: 308 IEEANVPRISFHDLRHTHATILMQQGENPKVVSERLGHSRVGITLDLYSHVSD--DLQEQ 365

Query: 335 NSRRISS--VVDSDDP 348
            + +  +  +  S +P
Sbjct: 366 AAEKFENALLKQSQNP 381


>gi|217975041|ref|YP_002359792.1| tyrosine recombinase XerC [Shewanella baltica OS223]
 gi|217500176|gb|ACK48369.1| tyrosine recombinase XerC [Shewanella baltica OS223]
          Length = 306

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 32/271 (11%), Positives = 88/271 (32%), Gaps = 21/271 (7%)

Query: 72  KWL--ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-FDYRKITTKHIRS---GVES 125
           +WL     Y  +     L+ ++  ++    ++      +      ++ +H +     +  
Sbjct: 14  QWLQTFERYLSTER--QLSAHTVRNYLYELNRGSDLLPEGVHLLNVSREHWQQVLSKLHR 71

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +  +P S    L++++   ++ +R+  + +NP   +  PK+     +    + +      
Sbjct: 72  KGLSPRSLSLCLSAVKQWGEFLLREGVIELNPAKGLSAPKQAKPLPKNIDVDAISHLLDI 131

Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT--------IIT 234
                   + +   E    SGLR ++     +  +Q ++  ++    G          + 
Sbjct: 132 EGTDPLSLRDKAMMELFYSSGLRLAELAALNLSSVQYDLKEVRVLGKGNKERIVPVGRLA 191

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSAHGVRKF 292
           +     ++      P      F+    ++++                  V    H +R  
Sbjct: 192 IAALLNWLNCRKQIPCEDNALFVTEKGKRLSHRSIQARMAKWGQEQALSVRVHPHKLRHS 251

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYT 323
            AT   +A A    +    G   +   + YT
Sbjct: 252 FATHMLEASADLRAVQELLGHANLATTQIYT 282


>gi|254785545|ref|YP_003072974.1| site-specific recombinase, phage integrase family [Teredinibacter
           turnerae T7901]
 gi|237687332|gb|ACR14596.1| site-specific recombinase, phage integrase family [Teredinibacter
           turnerae T7901]
          Length = 325

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 48/304 (15%), Positives = 96/304 (31%), Gaps = 20/304 (6%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87
             G R R  +  ++    AY   +       +      K    L  LI+ + K       
Sbjct: 18  RDGPRHRKTFKTQNE-AAAYQRYIIAEHANAKPWKEAPKDNRRLSQLINAWWK---LHGQ 73

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--TPSSAIQFLTSMRVLFK 145
           ++      ++Y + +  + GD     IT K+  S   +R    + ++A   L  ++ LF 
Sbjct: 74  SLKRGNERKTYLENLALQMGDPVANTITPKNFASFRSTRLKDVSANTANHDLAYLKALFN 133

Query: 146 WAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS--EGSQPRLAFEFLLYS 202
              R   +   NP   + R K     +    +  + +  +      GS   +     L +
Sbjct: 134 ELSRLGDWHQPNPFAEIRRLKTDETELTYLERSQIDELLTALDNCRGSHAGIIARVCLAT 193

Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ 262
           G R S++       ++NN  +    K+G +  V +      L+  +    +         
Sbjct: 194 GARWSEAATLKPSQVKNNKVTFSKTKSGKVRAVPIAPELAALILNSAPLVD--------- 244

Query: 263 KMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
               + F         +    + +H +R   A+     G     L    G   +     Y
Sbjct: 245 --GYSAFKRTVGKLDLELPPGQLSHVLRHTFASHFVMNGGNILTLQKILGHADIKMTMRY 302

Query: 323 TKGA 326
              A
Sbjct: 303 AHLA 306


>gi|163782910|ref|ZP_02177906.1| phage integrase family protein [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882031|gb|EDP75539.1| phage integrase family protein [Hydrogenivirga sp. 128-5-R1-1]
          Length = 361

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 37/258 (14%), Positives = 83/258 (32%), Gaps = 28/258 (10%)

Query: 99  FDQIIRKSGDFD---YRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI 155
             +++   GD     + +      +         PS+  + L  +R + +        + 
Sbjct: 105 VKKLVEVFGDKTLDYFSEFLIDSYKQDRIKEGVKPSTVNRELNILRAILRKVKEWGMYSG 164

Query: 156 N-PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGV 214
           + P   ++  K   E +R  + E+++       +  +P    +F   +GLR S+      
Sbjct: 165 DLP--RIKTYKVDDERVRYLSPEELKALIDACPDWFKP--VVKFACLTGLRASELFSLTW 220

Query: 215 QHLQNNIFSIKT----QKTGTIITVELPDGFMKLLAMTPIGKE-------TFFINNDKQK 263
             +  +   I       KT     + L    +++L      +E         F N   + 
Sbjct: 221 DMVNLSEGYITVPAKYSKTKETKRIPLHPKALEVLREVKARQEERWIDYGYVFTNRMGKP 280

Query: 264 MNATQFS--IWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
            +         FK    KAG+ +   H +R   A+    +G   + +       +    +
Sbjct: 281 YSVEGQGYKRVFKTACEKAGIRDFRFHDLRHTFASYLVMSGVDFYTVQELMRHSSPRMTK 340

Query: 321 TYTKGADRIRLGIKNSRR 338
            Y        L  ++ R+
Sbjct: 341 RYAH------LSPEHIRK 352


>gi|124268427|ref|YP_001022431.1| tyrosine recombinase XerC subunit [Methylibium petroleiphilum PM1]
 gi|124261202|gb|ABM96196.1| tyrosine recombinase XerC subunit [Methylibium petroleiphilum PM1]
          Length = 335

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 43/269 (15%), Positives = 92/269 (34%), Gaps = 29/269 (10%)

Query: 85  GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTS 139
             L+  + +++E  F ++   +       R +   H+R  +         P S    L++
Sbjct: 46  RRLSAKTLLNYEEAFRRLGEAAQRDGVALRAVQPHHVRHWMARLHAGGLAPRSIAIALSA 105

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF------WSEGSQPR 193
            R L++W   +  VA+NP   +  P+      +  + +                  ++ R
Sbjct: 106 WRGLYRWLGHEGRVALNPVEGLRAPRAAKPLPKALSVDHAVALADHRQVDGDARLEARDR 165

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT--------QKTGTIITVE--------L 237
              E L   GLR ++     V      +  I           K     +V         L
Sbjct: 166 CLVELLYGCGLRVAELVDLDVTPGGGALGWIDRADAEAHVLGKGSKRRSVPVGRAALAAL 225

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSAT 295
            D   +  ++  + +   F++   +++ A+Q     K +A +AG+  +   H +R   A+
Sbjct: 226 DDWLAQRGSVAQVDEPALFVSRHGRRLTASQVRTRLKERAIQAGLPTHVHPHMLRHSYAS 285

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTK 324
               +      +    G   +   + YTK
Sbjct: 286 HLLQSSGDLRAVQELLGHANITTTQVYTK 314


>gi|116618278|ref|YP_818649.1| tyrosine recombinase XerC subunit [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|116097125|gb|ABJ62276.1| tyrosine recombinase XerC subunit [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
          Length = 300

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 36/277 (12%), Positives = 98/277 (35%), Gaps = 27/277 (9%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYF----DQIIRKSGDFDYRKITTKHIRSGVE---S 125
            L  +Y +S      +  +  ++ +      + +    G   + ++ T  +R  +     
Sbjct: 7   QLYHDYLESER--QYSPQTLKAYLTDIAEFKNYLHESGGFTKFGEVQTLDVRVYLNDLYE 64

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +K   ++  + ++S+R+ +++ +  ++   NP  S+   K + +    + ++++ +    
Sbjct: 65  KKLARTTISRKISSLRMFYQFLITNQFAIDNPFDSISLKKHQNQLPDFFYEDELHELFDV 124

Query: 186 ---WSEGSQPRLA--FEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVE--- 236
                +    R A   EFL  +G+R ++     +  L  +    +   K      V    
Sbjct: 125 AYNHEDYLWERNAALLEFLYATGIRVAEIAGLTLSQLDFSQRLVLIHGKGNKDRYVPFGH 184

Query: 237 ----LPDGFMKLLAMTPI---GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AH 287
               +   ++  L  +       E  F+N+  + +     +        ++ +      H
Sbjct: 185 FAENIMKEYITDLRASLTVNQEHEYVFVNHRGEPITPAGITYILNQLMQRSALTGKIHPH 244

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            +R   AT   + GA    +    G   +   + YT 
Sbjct: 245 MLRHTFATHLINRGADMRTVQELLGHVNLSTTQMYTH 281


>gi|83313028|ref|YP_423292.1| site-specific recombinase XerD [Magnetospirillum magneticum AMB-1]
 gi|82947869|dbj|BAE52733.1| Site-specific recombinase XerD [Magnetospirillum magneticum AMB-1]
          Length = 308

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 36/268 (13%), Positives = 85/268 (31%), Gaps = 25/268 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITT--KHIRSGVESRKH---TPSSAIQFLTS 139
              + N+  ++               +  +    + + + +  +        +  + L+ 
Sbjct: 20  RGASPNTLDAYGRDLADFAEFLDGRGFSPLRADARAVAAYIARQAEIGMAARTQARRLSC 79

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK--SFWSEGSQPRLA-- 195
           ++  + +   +     +P  +++ P+      +   +E++      +   EGS   L   
Sbjct: 80  LKQFYGFVFAERLRPDDPTANIDAPRLGRPLPKYLRREEVTALLDAARALEGSDGILMTA 139

Query: 196 -FEFLLYSGLRCSDSCRAGVQHL-QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE 253
             E L  +GLR S+     +  + ++    +   K      V L D     L    + ++
Sbjct: 140 LLETLYAAGLRVSELVSLPLSAVARDPSVLVVRGKGSKERMVPLSDPARAALLAWKVERQ 199

Query: 254 TFFINNDKQKM-----------NATQFSIWFKAKATKAGVN---KSAHGVRKFSATISAD 299
           T    +   +              + F+      A  AG++    S H +R   A+    
Sbjct: 200 TLVPKSKPSRWLFPSSGALGHLTRSGFAKMLGRVAVLAGLDPAKVSPHVLRHSFASHLLA 259

Query: 300 AGATAHELMATYGWKTVDQAETYTKGAD 327
            GA    +    G   +   E YT   D
Sbjct: 260 GGADLRSVQEMLGHADIATTEIYTHLID 287


>gi|330818646|ref|YP_004362351.1| Site-specific recombinase XerC [Burkholderia gladioli BSR3]
 gi|327371039|gb|AEA62395.1| Site-specific recombinase XerC [Burkholderia gladioli BSR3]
          Length = 306

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 45/279 (16%), Positives = 88/279 (31%), Gaps = 30/279 (10%)

Query: 75  ISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTP 130
           I+ Y     H   L+ ++   +    D ++  +       +    +R  V        + 
Sbjct: 6   IAAYLSYLQHVRQLSEHTLRGYAHELDALLALADGRPLASLGAADMRGAVARAHAGGLSA 65

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFW 186
            S    L++ R  ++W   +  +  NP  +V  PKR     +  + +D    M+      
Sbjct: 66  RSIAHRLSAWRAFYRWYALRVEMPANPVATVRAPKRAKTLPKALSVDDANTLMESPFPDT 125

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN------IFSIKT------QKTGTIIT 234
            EG +     E    SGLR ++     V + Q +          +        K G    
Sbjct: 126 PEGLRDHAILELFYSSGLRLAELVGLDVHYTQADGYRSASWLDREQAEVSVLGKGGKERK 185

Query: 235 VELPDGFMKLLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284
           V +    ++ L                  F++   ++M+        K  A  AG+    
Sbjct: 186 VPVGRKALEALDAWLAVRAGWVRTDPHPLFLSVRGKRMSPGVVRERVKRAALVAGIPANV 245

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
             H +R   AT    +      +    G  ++   + YT
Sbjct: 246 HPHVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYT 284


>gi|251782571|ref|YP_002996873.1| integrase [Streptococcus dysgalactiae subsp. equisimilis GGS_124]
 gi|242391200|dbj|BAH81659.1| integrase [Streptococcus dysgalactiae subsp. equisimilis GGS_124]
          Length = 362

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 49/302 (16%), Positives = 95/302 (31%), Gaps = 27/302 (8%)

Query: 48  MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG 107
            +A       +  ++ P+    T   L  ++ K             +  +    I+ K  
Sbjct: 40  QAARETLINLQAELDKPKSS-MTFGALTDQWLKEYEKTVQGSTYLKTERNINKHILPKLD 98

Query: 108 DFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167
                 I    I+   E   +      + L  +R +   AVR  Y+  NP L +  PK K
Sbjct: 99  KVKIGDINPLLIQRLTEEWCNDLKYGGKILGLVRNILNLAVRYGYINNNPALPITPPKIK 158

Query: 168 TEG---IRPWTKEDMQQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222
            +       +T + ++QF     +         F  L ++G+R  +        L  N  
Sbjct: 159 RKRKMNNNFYTLDQLKQFLELVEKTDNIEKIALFRLLAFTGIRKGELLALTWDDLNGNTL 218

Query: 223 SIKTQKTGTIITVEL------------------PDGFMKLLAMTPIGKETFFINNDKQKM 264
           SI    T T + +E+                   +  ++L    P     F  +     M
Sbjct: 219 SINKAVTRTQVGLEIDVTKTKSSDRLISLDDETLEILLELRETFPTSTLMF-QSESGGIM 277

Query: 265 NATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TY 322
             +    W         + + + HG R   A++  ++G +  ++    G   +      Y
Sbjct: 278 TPSLPRKWLLQIIKGTDLPQITIHGFRHTHASLLFESGLSLKQVQHRLGHGDLQTTMNVY 337

Query: 323 TK 324
           T 
Sbjct: 338 TH 339


>gi|28210981|ref|NP_781925.1| site-specific tyrosine recombinase XerC [Clostridium tetani E88]
 gi|28203420|gb|AAO35862.1| putative integrase, recombinase [Clostridium tetani E88]
          Length = 328

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 86/229 (37%), Gaps = 19/229 (8%)

Query: 119 IRSGVESRKHTPSSAI-QFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTK 176
             + +++ +   S A  + + +++  FK+   + + +  NP + +E PK K       T 
Sbjct: 85  FMAFLDNYRDNGSYAKARKVATLKSFFKFLYSKVKILEENPAIELESPKIKKRNPTYLTL 144

Query: 177 EDMQQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234
           E+ ++  +     ++ R        L  GLR S+ C   +  ++ +   +   K     T
Sbjct: 145 EESKRLLASIDGTNKARDYCIITLFLNCGLRLSELCSIDISKIKEDTLYVI-GKGNKERT 203

Query: 235 VELPDGFMKLLA----------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN- 283
           + L    +K +                K+  FI+ +  ++N     I  K    KA ++ 
Sbjct: 204 IYLNKACLKAVEDYLKVRNKNLDKIKDKDALFISRNNTRINKRTVEIMLKKYLKKANLDE 263

Query: 284 --KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGADRI 329
              + H +R  +AT+    G      L    G + +   + YT   +  
Sbjct: 264 EKYTPHKLRHTAATLMYKHGDVDIRSLQKILGHENISTTQIYTHVDNEK 312


>gi|189024593|ref|YP_001935361.1| Phage integrase [Brucella abortus S19]
 gi|189020165|gb|ACD72887.1| Phage integrase [Brucella abortus S19]
          Length = 116

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 49/115 (42%), Gaps = 2/115 (1%)

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290
           + + +     ++L  TP   ET  +    +  +    +         A + K  + HG+R
Sbjct: 1   MFLPITPILSEVLEATPRQGETVLVTAYGEPFSPKSLTGRMVDWTASAKLPKGFTLHGLR 60

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345
           K    I A+ GA+  ++M T G   +  AE YT+ A++ RL      R+  +  +
Sbjct: 61  KTLGKILAEGGASTRQIMDTLGHDDIAHAELYTREAEQARLATDGMSRVVRLKRN 115


>gi|329733650|gb|EGG69978.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           21193]
          Length = 298

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 37/266 (13%), Positives = 94/266 (35%), Gaps = 22/266 (8%)

Query: 85  GSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVE---SRKHTPSSAIQFLTS 139
            + + ++  S++    Q  +  +    +      +  R+ +    S     +S  + +++
Sbjct: 16  RNFSEHTLKSYQDDLIQFNQFLEQEHLELNTFEYRDARNYLSYLYSNHLKRTSVSRKIST 75

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLA 195
           +R  +++ +  +   INP + +  PK++    + + +E+M+       E +    + R+ 
Sbjct: 76  LRTFYEYWMTLDENIINPFVQLVHPKKEKYLPQFFYEEEMEVLFKTVEEDTSKNLRDRVI 135

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVE--------LPDGFMKLL 245
            E L  +G+R S+      Q +    N  ++   K      V         + +      
Sbjct: 136 LELLYATGIRVSELVNIKKQDIDFYANGVTV-LGKGSKERFVPFGAYCRQSIENYLEHFK 194

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATK-AGV-NKSAHGVRKFSATISADAGAT 303
            +     +   +N   + +              + AGV     H +R   AT   + GA 
Sbjct: 195 PIQSCNHDFLIVNMKGEAITERGVRYVLNDIVKRTAGVSEIHPHKLRHTFATHLLNQGAD 254

Query: 304 AHELMATYGWKTVDQAETYTKGADRI 329
              + +  G   +     YT  +++ 
Sbjct: 255 LRTVQSLLGHVNLSTTGKYTHVSNQQ 280


>gi|319406365|emb|CBI80006.1| integrase/recombinase XerD [Bartonella sp. AR 15-3]
          Length = 312

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 43/285 (15%), Positives = 94/285 (32%), Gaps = 33/285 (11%)

Query: 73  WLISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI--TTKHIRSGVESRKHT 129
            +I  + +  +     +V + ++++        K             + + + +   +  
Sbjct: 5   AVIDRFLEMMSAERGASVRTLLAYQHDLQWAQNKLSSRSISFFSAQREDLINLLSLMQIA 64

Query: 130 PSSA---IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             +A    + L+++R  F++   +     +P   ++ P++     +  +++ + +   F 
Sbjct: 65  GCAATSQARRLSTLRQFFQFLYAEGLREDDPSNDIDSPRQGRPLPKIISEDAVTKLLDFA 124

Query: 187 SEGSQP------------RLA--FEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGT 231
              +              RL    E L  +GLR S+     VQ ++    F +   K G 
Sbjct: 125 QLETDQAEYGSQNYYRALRLWVFLEMLYATGLRISELVSLPVQAVRRKEAFILVRGKGGK 184

Query: 232 IITVELPDGFMKLL--------AMTPIGKETFFINNDKQKMNATQFSIW-FKAKATKAGV 282
              V + +   ++L                  F         A QF     K  A +AG+
Sbjct: 185 ERVVLVSEKARQVLSQWLILRDQGKDATSFYLFPARSSTGYIARQFVARGLKDLAKRAGI 244

Query: 283 ---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              N S H +R   A+     GA    +    G   +   + YT 
Sbjct: 245 QSENFSPHVLRHAFASHLLQNGADLRAVQHLLGHCDISTTQIYTH 289


>gi|296113698|ref|YP_003627636.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis RH4]
 gi|295921392|gb|ADG61743.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis RH4]
 gi|326562438|gb|EGE12757.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis 7169]
 gi|326569146|gb|EGE19208.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis BC1]
          Length = 330

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 44/297 (14%), Positives = 105/297 (35%), Gaps = 30/297 (10%)

Query: 58  REYINSPRKKPTTLKW-LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY----- 111
               +S +  P++  W  +S +       + + ++  ++++   Q        +Y     
Sbjct: 9   APTHSSHQSDPSSPAWGYLSSWCDELRLQNYSKHTITTYQTALIQFFNFLESDNYLGGDP 68

Query: 112 ----RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167
               R+  T+   + +E  K  P SA   L+++R+ +++ ++Q  +A+NP    +     
Sbjct: 69  LACRRQDLTRFFSTRLEEEKIKPISAKLSLSAIRIFYQFLIKQGVIAVNPTTGYKIKSAP 128

Query: 168 TEGIRPWTKEDMQQFK--------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN 219
            +      +  ++Q          +      + +  FE +  SGLR S+     +  +  
Sbjct: 129 RKLPTVADELLIKQLLDQKTPEDTAKACLWIRDKAMFELMYSSGLRLSELAGLNMGDVNF 188

Query: 220 NIFSIKTQKTGTIIT---------VELPDGFMKLLAMTPIGKETFFINND-KQKMNATQF 269
           +I  ++    G             + L D             +  FI+     +++    
Sbjct: 189 DIGIVRVLGKGNKTRQVPVGKKAMIALQDYLPHRNLWQKKNCKALFISERHGTRLSTRAI 248

Query: 270 SIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            +  K  AT AG+  +   H +R   A+    +      +    G + +   + YT 
Sbjct: 249 QLRLKVCATMAGIELNMYPHLLRHCFASHVLSSSGDLRAIQEMLGHQNISTTQIYTH 305


>gi|320107746|ref|YP_004183336.1| integrase family protein [Terriglobus saanensis SP1PR4]
 gi|319926267|gb|ADV83342.1| integrase family protein [Terriglobus saanensis SP1PR4]
          Length = 319

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 47/298 (15%), Positives = 91/298 (30%), Gaps = 46/298 (15%)

Query: 70  TLKWLISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGD--------FDYRKITTKHIR 120
           +   L   +         ++ ++  ++    +       D             +  +   
Sbjct: 3   SFSELADSFLAMLRDERGVSAHTLRAYTRELNDFTAFLADLLGNEAEVKQVEHLHIRSYL 62

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
           + +  R  + +SA + L ++R  FKW  ++  V  NP L V  PK      R  + E++ 
Sbjct: 63  AVLYDRGLSRASAARALAAVRSWFKWLAKEGKVQQNPALLVSTPKLPKHLPRVPSAEEVN 122

Query: 181 QFK------------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKT 226
           +              + W E  + R+ +E L   G+R S+     +     +N+   +  
Sbjct: 123 RVLDSIEQTGKKDESASWPE--RDRVIWELLYGCGIRNSELVGIDLSAIDWKNDAILV-L 179

Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM------------------NATQ 268
            K      V L D     +      +E       K K                       
Sbjct: 180 GKGRKERYVPLGDAANSAMRAYMPQREAKLQAAGKGKWMHSGPLLINLVARGDCRLTTRS 239

Query: 269 FSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
                KA A   G+      H +R    T   + GA    +    G + +   + YT+
Sbjct: 240 VGRIVKAIAVNRGLPADVHPHTLRHAFGTHLLEEGADLRAIQEMLGHERLSTTQRYTQ 297


>gi|312977299|ref|ZP_07789047.1| integrase/recombinase XerC [Lactobacillus crispatus CTV-05]
 gi|310895730|gb|EFQ44796.1| integrase/recombinase XerC [Lactobacillus crispatus CTV-05]
          Length = 270

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 86/235 (36%), Gaps = 17/235 (7%)

Query: 107 GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
           G    R+   +     +  RK   SS ++ ++S+   + +  R++ VAI+P   +   + 
Sbjct: 16  GWTKVRERDIQVYLQHLAERKLARSSQLRKMSSLHSFYHFLTRRKLVAIDPTQGITLRRG 75

Query: 167 KTEGIRPWTKEDMQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222
           + +  + + + +++Q             +    FE    +G+R S+     +  L  ++ 
Sbjct: 76  EKKLPQFFYQPELKQVFDSLKGNKPLTMRNLAMFELFYATGMRVSEVSNLTLNQLDLDLQ 135

Query: 223 SIKTQKTGTI-ITVELPDGFMKLL-----AMTP-----IGKETFFINNDKQKMNATQFSI 271
           +I     G     V   D   K L        P       ++  F+NN    + +     
Sbjct: 136 TILVHGKGNKDRYVAFDDKTKKSLIAYLENARPLLLKNDDEQHVFLNNQGTGITSRGIET 195

Query: 272 WFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             +    +AG++     H +R   AT   + GA    +    G  ++   + YT 
Sbjct: 196 VMQKTFNQAGISGKVHPHELRHSFATAMLNNGADLRSVQELLGHSSLSATQIYTH 250


>gi|167040193|ref|YP_001663178.1| tyrosine recombinase XerD [Thermoanaerobacter sp. X514]
 gi|300914277|ref|ZP_07131593.1| tyrosine recombinase XerD [Thermoanaerobacter sp. X561]
 gi|307724487|ref|YP_003904238.1| tyrosine recombinase XerD [Thermoanaerobacter sp. X513]
 gi|166854433|gb|ABY92842.1| tyrosine recombinase XerD [Thermoanaerobacter sp. X514]
 gi|300889212|gb|EFK84358.1| tyrosine recombinase XerD [Thermoanaerobacter sp. X561]
 gi|307581548|gb|ADN54947.1| tyrosine recombinase XerD [Thermoanaerobacter sp. X513]
          Length = 290

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 30/241 (12%), Positives = 89/241 (36%), Gaps = 13/241 (5%)

Query: 89  VNSRISFESYFDQIIR-KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWA 147
            +     + + + +   +   ++ +K T  +    ++ +  + ++  + L+S++  + + 
Sbjct: 25  ESYNRDIKQFLNYLEEIEFEYYNVKKSTILNYLYYLKKKGKSQATVSRNLSSLKAFYHYL 84

Query: 148 VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFEFLLYSG 203
             ++ +  +P   +  PK + +     T E +    S       +G + +   E L  +G
Sbjct: 85  FMKKKIEEDPTYMINTPKVEKKPPATLTVEQVDMLLSIDFGNDEKGLRDKALIELLYATG 144

Query: 204 LRCSDSCRAGVQHLQNNIFSIKTQKTGTII------TVELPDGFMKLLAMTPIGKETFFI 257
           L+ S+     ++ +  +   +  +     +       +E    +++       G+ T F+
Sbjct: 145 LKVSEVISLKLEDVNLSYGYVVIRSNKERVIPIGSHAIEALKNYIEKGRKAKNGENTLFL 204

Query: 258 NNDKQKMNATQFSIWFKAKATKA--GVNKSAHGVRKFSATISADAGATAHELMATYGWKT 315
           N   +K+         +    K   G   + + +R+  A      GA    +    G++T
Sbjct: 205 NLRGEKLTRQGCWKIIREYTDKINPGFPVTPNTLRQSFAQHMLQNGADIRAVQEMLGYQT 264

Query: 316 V 316
            
Sbjct: 265 D 265


>gi|109392486|ref|YP_655615.1| gp36 [Mycobacterium phage Che12]
 gi|91980636|gb|ABE67355.1| gp36 [Mycobacterium phage Che12]
          Length = 371

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 57/298 (19%), Positives = 109/298 (36%), Gaps = 40/298 (13%)

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYR 112
              K+   ++   +  T KWL+           LA ++R  +  + ++ I    GD    
Sbjct: 63  DRAKKAAASAVTLEEYTRKWLVER--------DLAESTRELYSGHAERRIYPVLGDVAVP 114

Query: 113 KITTKHIRSGVESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
           ++T   +R+      ++ P++       +R +   AV  + +A NPC  +E+       +
Sbjct: 115 ELTPALVRAWWAGMGRNHPTARRHAYNVLRAVMNTAVEDKLIAENPCR-IEQKAPDERDV 173

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKT 229
              T E++    +        R+A   L ++ LR  +      + +        ++ ++ 
Sbjct: 174 EALTPEELDIVAA--EIFEHYRIAAYILAWTSLRFGELIELRRKDIVDDGKTMKLRVRRG 231

Query: 230 GTII----------------TVELPDGFMKLLA-----MTPIGK--ETFFINN-DKQKMN 265
           GT +                 V +P     ++       T + K  E F +      +++
Sbjct: 232 GTRVGNKIVVGNAKTVRSKRPVTVPPHVATMIREHMKDRTKMNKGPEAFLVTTTQGNRLS 291

Query: 266 ATQFSIWFKA-KATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
            + F+   K   A         H +R   AT +A AGAT  ELMA  G  T   A  Y
Sbjct: 292 KSAFTKSLKRGYAKIGRPELRIHDLRAVGATFAAQAGATTKELMARLGHTTPRMAMKY 349


>gi|145631901|ref|ZP_01787657.1| tyrosine recombinase [Haemophilus influenzae R3021]
 gi|148826672|ref|YP_001291425.1| site-specific tyrosine recombinase XerC [Haemophilus influenzae
           PittEE]
 gi|229847208|ref|ZP_04467312.1| site-specific tyrosine recombinase XerC [Haemophilus influenzae
           7P49H1]
 gi|166918886|sp|A5UE41|XERC_HAEIE RecName: Full=Tyrosine recombinase xerC
 gi|144982462|gb|EDJ90028.1| tyrosine recombinase [Haemophilus influenzae R3021]
 gi|148716832|gb|ABQ99042.1| tyrosine recombinase [Haemophilus influenzae PittEE]
 gi|229809884|gb|EEP45606.1| site-specific tyrosine recombinase XerC [Haemophilus influenzae
           7P49H1]
 gi|309973815|gb|ADO97016.1| Site-specific tyrosine recombinase XerC [Haemophilus influenzae
           R2846]
          Length = 295

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 39/260 (15%), Positives = 88/260 (33%), Gaps = 21/260 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRKHTPSSAIQFLT 138
             ++ ++  +++   D  I+     D    T       + I +  + +     S    L+
Sbjct: 16  RQMSPHTITNYQHQLDATIKILAQQDIHAWTQVTPSVVRFILAESKKQGLKEKSLALRLS 75

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS---FWSEGSQPRLA 195
           ++R    + V+Q  + +NP   +  PK+     +    E +QQ  +         + R  
Sbjct: 76  ALRRFLSFLVQQGELKVNPTTGISAPKQGKHLPKNMDGEQVQQLLANDSKEPIDIRDRAI 135

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLLA 246
            E +  SGLR S+     +  +   +  ++    G    V          + +       
Sbjct: 136 LELMYSSGLRLSELQGLDLNSINTRVREVRVIGKGNKERVVPFGRYASHAIQEWLKVRAL 195

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATA 304
             P   E  F++    +++        +    + G+N   + H +R   AT   +A +  
Sbjct: 196 FNP-KDEALFVSQLGNRISHRAIQKRLETWGIRQGLNSHLNPHKLRHSFATHMLEASSDL 254

Query: 305 HELMATYGWKTVDQAETYTK 324
             +    G   +   + YT 
Sbjct: 255 RAVQELLGHSNLSTTQIYTH 274


>gi|260461664|ref|ZP_05809911.1| tyrosine recombinase XerD [Mesorhizobium opportunistum WSM2075]
 gi|259032734|gb|EEW33998.1| tyrosine recombinase XerD [Mesorhizobium opportunistum WSM2075]
          Length = 305

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 48/281 (17%), Positives = 95/281 (33%), Gaps = 31/281 (11%)

Query: 75  ISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI--TTKHIRSGVESRKHTPS 131
           I  + +  +     A N+  S+    +    +             +     + +R   P+
Sbjct: 7   IEAFLEMMSAERGAAENTLSSYRRDLEDASNEIDGGLAGAAAADIRAYLDDIAARGFAPT 66

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS---- 187
           S  + L+++R  FK+   +     +P  +++ PK+     +  ++ D  +     +    
Sbjct: 67  SQARKLSAIRQFFKFLYAEGLRGDDPTGTLDSPKKGRPLPKTMSEADTGRLIDRAATEAG 126

Query: 188 ---EGSQPRLA-------FEFLLYSGLRCSDSCRAGVQ-HLQNNIFSIKTQKTGTIITVE 236
               G   RLA        E L  +GLR S+     V    +++ F +   K      V 
Sbjct: 127 DAGLGHADRLAALRLHALVEVLYATGLRVSELVGLPVTVAQRDDRFFMVRGKGDKERMVP 186

Query: 237 LPDGFMKLLAMT-------PIGKETFFIN---NDKQKMNATQFSIWFKAKATKAGV---N 283
           L       +          P   E+ F+    +D   ++   F+   K  A +AG+    
Sbjct: 187 LSAKARAAMRTWLAARAGVPAFAESPFLFPAASDSGYLSRQVFARDLKGLAARAGIASAK 246

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            S H +R   A+     GA    +    G   +   + YT 
Sbjct: 247 VSPHVLRHAFASHLLQNGADLRAVQQLLGHADISTTQIYTH 287


>gi|126207972|ref|YP_001053197.1| phage integrase family protein [Actinobacillus pleuropneumoniae
           L20]
 gi|303250282|ref|ZP_07336482.1| phage integrase family protein [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|126096764|gb|ABN73592.1| predicted phage integrase family protein [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
 gi|302650898|gb|EFL81054.1| phage integrase family protein [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
          Length = 346

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 51/252 (20%), Positives = 92/252 (36%), Gaps = 18/252 (7%)

Query: 88  AVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFK 145
           A N+R S       + +  GD      +I  +HI+  ++ RK TP+ A   +     ++ 
Sbjct: 88  AKNTRQSNLQAIGWLCKFFGDPPIPLERIEPQHIKQYLQWRKDTPAVANIEVGLFNTIWN 147

Query: 146 WAVRQEYVA-INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGL 204
            A    Y +  +P   V++   K   I       +++   F  E        E     G 
Sbjct: 148 SAREWGYTSLPSPSQGVKKFPTKYREIYV-EDYILEKIYEFADERMAD--IIETAYLLGQ 204

Query: 205 RCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF-FINNDKQK 263
           R  D C     H+ N I  I  QKTG  +  E+     +++      + T+ F N   +K
Sbjct: 205 RPIDICNIHRSHIYNGILHITQQKTGKKVRFEITGRLKEIIDKRLQPETTWLFTNKWGKK 264

Query: 264 MNATQFSIWFKAKATKA---------GVNK-SAHGVRKFSATISADAGATAHELMATYGW 313
           ++    ++ F+    KA          + K     +R  +AT  +   AT  +     G 
Sbjct: 265 LDRQILTVHFREIREKAMRAYPELANEIGKVQMRDMRAKAATDISLT-ATDEQAQKQLGH 323

Query: 314 KTVDQAETYTKG 325
            +    + Y + 
Sbjct: 324 TSKRMTQHYIRK 335


>gi|153005549|ref|YP_001379874.1| tyrosine recombinase XerC [Anaeromyxobacter sp. Fw109-5]
 gi|152029122|gb|ABS26890.1| tyrosine recombinase XerC [Anaeromyxobacter sp. Fw109-5]
          Length = 311

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 44/233 (18%), Positives = 80/233 (34%), Gaps = 22/233 (9%)

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM-- 179
              + +   +S  + L+++R L+++ VR+   A NP  SV  PKR     +   +E++  
Sbjct: 64  ARAAGEAGATSLGRKLSAIRTLYRFLVREGLAAGNPARSVSGPKRPMRLPQVLPEEEVAA 123

Query: 180 --QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVE 236
             +  +       + R   E L  SGLR S+     +  +  +        K      V 
Sbjct: 124 LVEAPELAAPLEQRDRAFLELLYASGLRVSELTGLDLASIDLSGRLVRVLGKRNKERIVP 183

Query: 237 L-----------PDGFMKLLAMT---PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
                        D    +LA        +E  F+N    +++    +          G+
Sbjct: 184 FGASAGEAVRRYLDEARPILAAGRDHATAEEALFLNYRGGRLSPRSVARRLDRWVLATGL 243

Query: 283 NKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
            +    H +R   AT     GA    +    G  ++   + YT   D  RL  
Sbjct: 244 PRHVHPHVLRHCFATHLLGNGADLRGIQELLGHASLSTTQRYTH-VDWKRLAA 295


>gi|168185960|ref|ZP_02620595.1| phage integrase [Clostridium botulinum C str. Eklund]
 gi|169296151|gb|EDS78284.1| phage integrase [Clostridium botulinum C str. Eklund]
          Length = 366

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 53/328 (16%), Positives = 113/328 (34%), Gaps = 36/328 (10%)

Query: 49  SALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD 108
           +AL     + E  +       T+K  I  + ++    + + ++   ++ +   II   G 
Sbjct: 42  AALAELINQIEKGSIITNDKMTVKEYIEYWLETYPKNNCSPSTYKRYKFFIKDIINYIGK 101

Query: 109 FDYRKITTKHIRSGVESRKHTPS-SAIQFLTSMRVL---FKWAVRQEYVAINPCLSVERP 164
               K+    I+   E      + S    + + R+L    K A + + +  NPC  V  P
Sbjct: 102 HKLSKLNPMIIQKFYEDLLSDRNISNNTVIKTHRMLHLALKHAQQWQLINNNPCDLVTPP 161

Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
           K   + ++ W  +++  +     E      A    + +G R  + C      +     +I
Sbjct: 162 KATKQEMKYWQPDEINIYLDILKEEFL-YPAIFLAIQTGCRVGELCAIKWSDVDLIDKTI 220

Query: 225 KTQKT----------------GTIITVELPDGFMKLLAMTPIGK-----------ETFFI 257
           +  KT                 +I T+ L +  +  L      +           +    
Sbjct: 221 RIDKTLQRIDCKLALKYPKTQNSIRTITLLETAITFLKNLKKNRIEKKLKYGIELDYVLC 280

Query: 258 NNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTV 316
             D + ++    S  F     K  + K   H +R   AT+   AG  A  +    G  TV
Sbjct: 281 WEDGRPIDPHYISQHFPKLLDKYNLPKIRFHDLRHSHATLLLKAGVNAKIISKRLGHSTV 340

Query: 317 D-QAETYTKGADRIRLGIKNSRRISSVV 343
               +TY+  +   ++  +   ++ +++
Sbjct: 341 AFTLDTYSHVS--TKMQKEEMSKVENLL 366


>gi|295696106|ref|YP_003589344.1| integrase family protein [Bacillus tusciae DSM 2912]
 gi|295411708|gb|ADG06200.1| integrase family protein [Bacillus tusciae DSM 2912]
          Length = 304

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 48/281 (17%), Positives = 97/281 (34%), Gaps = 27/281 (9%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD------YRKITTKHIRSGVESRKHTPS 131
           Y +S     L+  +  ++     Q++    D           +  +   + +  R  +  
Sbjct: 18  YLESER--RLSPRTVRAYMGDVGQLLEWMQDQGIGGWDLLTPVRIRDFLAELWDRGLSRR 75

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS---- 187
           S  + L++ R L+++ +R++ V  +P   V  PK++         E++    +       
Sbjct: 76  SVARMLSAYRTLYRFFLREDEVRESPLEPVATPKQEKRIPNFMDLEEVFHLLASPDPNTA 135

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLA 246
            G + R   E+L  +G+R  ++    V  +      ++   K G    V       + L 
Sbjct: 136 LGQRDRALLEWLYATGVRVGEAVALRVGDVDMAGRRALIHGKGGKERYVLFGRSAARALT 195

Query: 247 ------------MTPIGKETFFINNDKQKMNATQFSIWF-KAKATKAGVNK-SAHGVRKF 292
                         P   +  F+N     ++         +  A  AG +K S H +R  
Sbjct: 196 RYLEVGWPALAGACPGPGDPVFLNYRGGALSDRSVRRIVDRHMARVAGYHKISPHVLRHT 255

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
            AT   DAGA    +    G  ++   + YT       L +
Sbjct: 256 FATHLLDAGADLRAVQELLGHASLRSTQIYTHTTRERLLQV 296


>gi|149919060|ref|ZP_01907545.1| site-specific recombinase, phage integrase family protein
           [Plesiocystis pacifica SIR-1]
 gi|149820213|gb|EDM79632.1| site-specific recombinase, phage integrase family protein
           [Plesiocystis pacifica SIR-1]
          Length = 361

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 51/326 (15%), Positives = 95/326 (29%), Gaps = 28/326 (8%)

Query: 25  FRKGHGR--RIRLPYP-----HESTFIPAYMSAL-TGSTPKREYINS-PRKKP-TTLKWL 74
           F+   GR  RIR   P         +     SAL +G+  K +     P+++P  +    
Sbjct: 10  FQHPDGRIERIRRRSPVNTRRGAQQYEREVRSALLSGTYQKGDTTRQEPKQEPCPSFAQF 69

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKHT--PS 131
            S++  +    +   +S  S  S  +  +    G     +I  + I      +  T    
Sbjct: 70  ASQFIDNYATVNNKPSSVRSKRSMLEHHLTPFFGKMRLSQIGPRQIERYKALKAKTLSAK 129

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           +    LT++R +   A    Y+   P   V+  +      R    E+  +      E   
Sbjct: 130 TINNHLTTVRKMLVVASEWGYLEAVPS--VKWMRAPKPEFRFLDFEEADRLLEGAKEEPM 187

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ---------KTGTIITVELPDG 240
                   + +GLR  +        +   +    I+           K      + L + 
Sbjct: 188 WWTMILVAMRTGLRQGELLGLRWCDVDLKSGRLVIRQAVAEGIVGTPKNHRQRELPLAES 247

Query: 241 FMKLLAMT-PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISA 298
             + L           F   D   +              KAG+     H +R   A+   
Sbjct: 248 VHQALEAWRHRLGPLVFCQPDGTMLTKNMCKWPLIRAKRKAGIEALGWHDLRHTFASHLV 307

Query: 299 DAGATAHELMATYGWKTVDQAETYTK 324
             G     +    G  T++    Y  
Sbjct: 308 MRGVPLRAVQELLGHSTIEMTMRYAH 333


>gi|117919693|ref|YP_868885.1| phage integrase family protein [Shewanella sp. ANA-3]
 gi|117612025|gb|ABK47479.1| phage integrase family protein [Shewanella sp. ANA-3]
          Length = 399

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 54/297 (18%), Positives = 100/297 (33%), Gaps = 19/297 (6%)

Query: 48  MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKS 106
             A            +  +K  T+K L  ++ +         +++  ++   D+ II   
Sbjct: 77  WLAEVRRGGDPGAAKAEARKAPTVKELCVKFMEDYSRHRNKPSTQRGYQGNIDRNIIPIL 136

Query: 107 GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI--NPCLSVERP 164
           G    + +    + + ++   + P  A + L+ +R +F  A    Y     NPC  +   
Sbjct: 137 GRMKVQDVKRADVAAMMKKLDYKPGEANKALSVLRKMFNLAEIWGYRTDGSNPCRHIP-L 195

Query: 165 KRKTEGIRPWTKEDMQQFKSFWS----EGSQPR---LAFEFLLYSGLRCSDSCRAGVQHL 217
               +  R  T E+M +          EG  P    LA         R S+      + +
Sbjct: 196 YTGGKTTRLITDEEMVKLFKHLDQIEAEGLVPYVVPLAIRLQFEFAARRSEIVLLEWEWI 255

Query: 218 Q--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG-KETFFINNDKQKMNATQFSIWFK 274
              N        KTG +    + +   +LL+  P      + + + +  +    +  ++ 
Sbjct: 256 DLENRRVVWPDSKTGGMSK-PMSEEAYRLLSTAPRQPGARYVLPSPRNPLTHLTYGEYYG 314

Query: 275 AKA---TKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
                   AGV     HG+R  SAT  A++G      M     KTV     Y    D
Sbjct: 315 GWTRTLKAAGVPHVGTHGIRHRSATDIANSGIPVKVGMVLTAHKTVTMFMRYIHTED 371


>gi|262067772|ref|ZP_06027384.1| integrase/recombinase, phage integrase family [Fusobacterium
           periodonticum ATCC 33693]
 gi|291378498|gb|EFE86016.1| integrase/recombinase, phage integrase family [Fusobacterium
           periodonticum ATCC 33693]
          Length = 329

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 42/265 (15%), Positives = 104/265 (39%), Gaps = 18/265 (6%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----KHT 129
           LI ++       +L+  +   +    +       +  ++ +T+  + S + S+    K T
Sbjct: 51  LIKQFVIQKKVQNLSDRTIKYYVLTLELFNSFLRNKPFQTVTSNDVISFLGSKMYKDKVT 110

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            ++A     ++   F +    +++  NP   V++     E  + ++  ++ + +  ++  
Sbjct: 111 STTANNLRRNLSSFFTFLQEFDFILKNPMARVKKINEVREKKKAFSATELAKIRKVFT-N 169

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPD-------G 240
            + R  FE LL+SG+R    C      +   +   ++  +K     TV   +        
Sbjct: 170 KRDRAIFELLLHSGIRVGGLCGLKFDDINFSDKTLTV-FEKGRKYRTVYFNEEAEFYLKE 228

Query: 241 FMKLLAMTPIGKETFFIN--NDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATIS 297
           +++        ++  F++     +K+  +   I  +    +AGV N   H  R+  AT +
Sbjct: 229 YLEERQHLDTKEKHIFVSLLKPYKKLQISGVEIMIRQAGKEAGVNNVHPHRFRRTFATTA 288

Query: 298 ADAGATAHELMATYGWKTVDQAETY 322
              G +  ++    G K +D  + Y
Sbjct: 289 WKKGMSIIDIKNLLGHKKLDTTQIY 313


>gi|183981830|ref|YP_001850121.1| integrase/recombinase XerC [Mycobacterium marinum M]
 gi|183175156|gb|ACC40266.1| integrase/recombinase XerC [Mycobacterium marinum M]
          Length = 302

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 39/267 (14%), Positives = 89/267 (33%), Gaps = 26/267 (9%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHTPSSA---IQFLTSM 140
             + ++R ++      ++        D R ++   +RS + +     ++     +  +++
Sbjct: 21  GRSAHTRRAYLGDLRSLLDYLAGRGADLRALSLPVLRSWLATAAGAGAARTTLARRTSAV 80

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS--------QP 192
           +    WAVR+  +A +P   ++ PK          ++      +    G+        + 
Sbjct: 81  KAFTAWAVRRGLLATDPAARLQVPKAHRTLPAVLRQDQALAAMTAAKSGAQQGDPLALRD 140

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-----ELPDGFMKLLA- 246
           RL  E L  +G+R S+ C   +  +      ++    G             +     LA 
Sbjct: 141 RLIVELLYATGIRVSELCGLDIDDVDTGHRLVRVLGKGNKQRTAPFGQPAAEALQAWLAD 200

Query: 247 -----MTPIGKETFFINNDKQKMNATQFSIWFKA--KATKAGVNKSAHGVRKFSATISAD 299
                 T        +    ++++  Q          A     +   HG+R  +AT   +
Sbjct: 201 GRPALATAESGPALLLGARGRRLDVRQARTVVHQTVAAVDGAPDMGPHGLRHSAATHLLE 260

Query: 300 AGATAHELMATYGWKTVDQAETYTKGA 326
            GA    +    G  ++   + YT  A
Sbjct: 261 GGADLRVVQELLGHSSLATTQLYTHVA 287


>gi|323170898|gb|EFZ56548.1| integrase domain protein [Escherichia coli LT-68]
          Length = 230

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 39/216 (18%), Positives = 80/216 (37%), Gaps = 17/216 (7%)

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
             +SA    +++   F+ A+ + ++  NP  +    K +    R    E ++ +++  S 
Sbjct: 10  KAASAKLIRSTLSDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEYLKIYQAAESS 69

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP---DGFMKLL 245
               RLA E  + +G R  D C      + +    ++  KTG  I + +    D     +
Sbjct: 70  PCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPITLHVDALGISM 129

Query: 246 AMT------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NKSAHGVRKFSA 294
             T       +G ET   +  ++ +++   S +F      +G+       + H +R   +
Sbjct: 130 KETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPPTFHELR-SLS 188

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
               +   +        G K+   A  Y    DR R
Sbjct: 189 ARLYEKQISDKFAQHLLGHKSDTMASQY--RDDRGR 222


>gi|237797828|ref|ZP_04586289.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331020678|gb|EGI00735.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 290

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 37/259 (14%), Positives = 91/259 (35%), Gaps = 19/259 (7%)

Query: 85  GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIR---SGVESRKHTPSSAIQFLT 138
             ++ ++  ++     ++    +K+    + ++  +H+R   +    +  +  S  + L+
Sbjct: 7   RQVSPHTLEAYRRDLGKVLAYCQKAQLSSWNELDIQHLRSFTARQHQQGQSSRSLARMLS 66

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRL 194
           ++R  +K+  R+   A +P   +  PK +    +    +   Q      E      +   
Sbjct: 67  AVRGFYKYLNREAICAHDPANGLSPPKGERRLPKTLDTDRTAQLLDGGVEDDFLAHRDHA 126

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV--------ELPDGFMKLLA 246
             E    SGLR S+     +  L  +   I+    G+   V           + ++ L A
Sbjct: 127 ILELFYSSGLRLSELTGLNLDQLDLSDGLIQVLGKGSKTRVLPVGSKARRALETWLPLRA 186

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAK-ATKAGVNKSAHGVRKFSATISADAGATAH 305
           +     +  F+    +++      +  KA    + G N   H +R   A+   ++     
Sbjct: 187 LANPQDDAVFVTRQGKRLGPRAVQVRLKAAGERELGQNLHPHMLRHSFASHLLESSQDLR 246

Query: 306 ELMATYGWKTVDQAETYTK 324
            +    G   +   + YT 
Sbjct: 247 AVQELLGHADIKTTQIYTH 265


>gi|145633727|ref|ZP_01789452.1| tyrosine recombinase [Haemophilus influenzae 3655]
 gi|144985386|gb|EDJ92213.1| tyrosine recombinase [Haemophilus influenzae 3655]
          Length = 295

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 39/260 (15%), Positives = 92/260 (35%), Gaps = 21/260 (8%)

Query: 85  GSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFLT 138
             ++ ++  +++   D   +I+ +   + + ++T   +R  +   K       S    L+
Sbjct: 16  RQMSPHTLTNYQHQLDATIKILAQQDIYAWAQVTPSVVRFILAESKKQGLKEKSLALRLS 75

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS---FWSEGSQPRLA 195
           ++R    + V+Q  + +NP   +  PK+     +    E +QQ  +         + R  
Sbjct: 76  ALRRFLSFLVQQGELKVNPATGISAPKQGKHLPKNMDGEQVQQLLANDSKEPIDIRDRAI 135

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLLA 246
            E +  SGLR S+     +  +   +  ++    G    V          + +       
Sbjct: 136 LELMYSSGLRLSELQGLDLNSINTRVREVRVIGKGNKERVVPFGRYASHAIQEWLKVRAL 195

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATA 304
             P   E  F++    +++        +    + G+N   + H +R   AT   +A +  
Sbjct: 196 FNP-KDEALFVSQLGNRISHRAIQKRLETWGIRQGLNSHLNPHKLRHSFATHMLEASSDL 254

Query: 305 HELMATYGWKTVDQAETYTK 324
             +    G   +   + YT 
Sbjct: 255 RAVQELLGHSNLSTTQIYTH 274


>gi|261746151|gb|ACX94072.1| putative integrase [Acinetobacter genomosp. 3]
          Length = 203

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 35/172 (20%), Positives = 68/172 (39%), Gaps = 10/172 (5%)

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-- 218
           +ERPK   +     +KE++ +  S      + R     +  +GLR S++ +  ++ +   
Sbjct: 18  IERPKTPRKLPNVLSKEEIIKIVSVLK-NLKHRTVISLIYSAGLRISEAVKMEIRDIDFN 76

Query: 219 NNIFSIKTQKTGT----IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274
             I +IK  K        +++++    ++ +A     K   F     +K +       F 
Sbjct: 77  RKIINIKDAKGKKDRQTALSLKIEKLLLEYMAFYKPSK-YIFEGAGGEKYSERSIQQVFT 135

Query: 275 AKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
               +AG+ K  S H +R   AT   +AG     +    G ++    E YT 
Sbjct: 136 IAVKEAGIKKEVSVHSLRHSYATHLHEAGTDIKIIQELLGHESTKTTEIYTH 187


>gi|227539350|ref|ZP_03969399.1| possible tyrosine recombinase [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227240806|gb|EEI90821.1| possible tyrosine recombinase [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 301

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 44/256 (17%), Positives = 92/256 (35%), Gaps = 19/256 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFD-YRKITTKHIRSGVESR----KHTPSSAIQFLTS 139
              A N+  S++ Y    ++    +    +I    I + +  +    K + S     + +
Sbjct: 39  QRYAGNTIRSYKDYASIFLKHVSKYPSLEEIPLSDIEAFINEKVQNGKISVSYQKGLVGA 98

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRK-TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEF 198
           ++ +++  + ++       L    PKR  ++  + ++KE+++      ++  + +     
Sbjct: 99  IKKMYELILDKKIQ-----LDYLYPKRSFSKLPKFFSKEEVRNILDN-TQNLKHKAILMT 152

Query: 199 LLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAM---TPIGKE 253
           +   GLR S+     ++ ++  + I  I   K      V LPD  +  L         KE
Sbjct: 153 IYSCGLRLSELLNLKIKDIKSSDGIIRIHQSKGNKDRIVSLPDKLLATLRHYYQAFKPKE 212

Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATY 311
             F      K +     +  K    KA V    S H +R   AT    +G     +    
Sbjct: 213 YLFEGERGGKYSERSVQLILKKALIKANVQSEGSVHTLRHSYATHLIQSGIDIRIVKELL 272

Query: 312 GWKTVDQAETYTKGAD 327
           G + +     YT   D
Sbjct: 273 GHENIKTTMIYTHITD 288


>gi|167752616|ref|ZP_02424743.1| hypothetical protein ALIPUT_00870 [Alistipes putredinis DSM 17216]
 gi|167659685|gb|EDS03815.1| hypothetical protein ALIPUT_00870 [Alistipes putredinis DSM 17216]
          Length = 368

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 39/297 (13%), Positives = 94/297 (31%), Gaps = 22/297 (7%)

Query: 41  STFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD 100
             F   Y         +    +   K+  TL      Y +       + ++  ++ +YF 
Sbjct: 62  PDFYDRYSPHAYIDYSRVYVRHPKPKREYTLP---KGYLELLEQKRYSPSTVKTYRAYFS 118

Query: 101 QIIRKSGDFDYRKITTKHIRSGV----ESRKHTPSSAIQFLTSMRVLFKWAV--RQEYVA 154
             +      +  ++    I   +      +K + S     + +++  ++     +++Y  
Sbjct: 119 DFMEYHKGRNIDRLKVPDINKYILYLVNEKKISVSQQNMRINAIKFYYEQVKGGKRQYYG 178

Query: 155 INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGV 214
                 + R K         +K ++++  +  S   +       +  +GLR S+      
Sbjct: 179 -----GITRAKEYKSLPEVLSKNEIKRILAQIS-NIKHHCMISLVYSAGLRRSELLNLTP 232

Query: 215 QHLQNNIFSIKTQKTGTI-----ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF 269
           Q + +   S++    G       ++ +L +            K  F      ++ +A+  
Sbjct: 233 QDINSETMSVRIMGKGKKCRYSLLSPKLLEELRHYFREYRPQKWLFEGETPGEQYSASAL 292

Query: 270 SIWFKAKATKAGVNKSAHG--VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
               K  A +AG+    H   +R   AT   + G   H +    G   +     Y  
Sbjct: 293 VKVLKEAAHRAGIKHRVHVHMLRHSFATHLLEQGTDLHTIQELLGHNDIKTTTIYLH 349


>gi|119469654|ref|ZP_01612523.1| site-specific recombinase [Alteromonadales bacterium TW-7]
 gi|119446901|gb|EAW28172.1| site-specific recombinase [Alteromonadales bacterium TW-7]
          Length = 314

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 38/268 (14%), Positives = 94/268 (35%), Gaps = 30/268 (11%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
           +++Y     + +L          YF+++      F  +    +     + +++ +  +  
Sbjct: 37  VNQYVSQLGFAAL----------YFNKLCDDW--FGVQAEHIRRYSMALRAKQLSGRTIS 84

Query: 135 QFLTSMRVLFKWAVRQEYVA----INPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WS 187
             L+ +R L+K+   +         NP   ++ PK      +    + M +         
Sbjct: 85  LKLSCIRSLYKFLKAKNIAQQSHYHNPATGIKGPKFAKPLPKNLDVDQMARLLEIPDDDP 144

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVEL----PDGFM 242
              + +   E +  SGLR S+   A +Q +      I  +  G     + +     +   
Sbjct: 145 LAIRDKAMMELMYSSGLRISELVGANMQDINAKSGEILVRGKGNKERLIPVGTKALEALK 204

Query: 243 KLLAMTP----IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATI 296
           K L + P      +   F+++ K +++  Q  +  +    K G++     H +R   A+ 
Sbjct: 205 KWLTVRPQFAKPDEPGVFLSSQKNRISIRQVRLRMQEWGIKQGISSQVHPHKLRHSFASH 264

Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324
             ++      +    G  ++   + YT 
Sbjct: 265 ILESSGDLRAVQELLGHSSLSATQVYTH 292


>gi|319936094|ref|ZP_08010516.1| hypothetical protein HMPREF9488_01347 [Coprobacillus sp. 29_1]
 gi|319808881|gb|EFW05399.1| hypothetical protein HMPREF9488_01347 [Coprobacillus sp. 29_1]
          Length = 301

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 30/272 (11%), Positives = 83/272 (30%), Gaps = 22/272 (8%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           +  Y     +   L   +  ++    +Q        + +      +        + P + 
Sbjct: 6   VENYLNYCQYQKRLTGKTLKAYRIDLNQFYTYMQFKNLKNKKDISVYIQQLHTTYKPRTV 65

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQQFKSFWSEG--- 189
            + + +++  + +  +Q+++  NP   ++ R K      +  T  ++             
Sbjct: 66  KRKIAAIKAFYTYLEKQDFLKENPFHKIDYRFKEPIRLPKTITLHELNHLYQSLYAYSKQ 125

Query: 190 ------SQPRLAFEFLLYSGLRCSDSCRAGVQH--LQNNIFSIKTQKTGTII-------T 234
                 ++     E L+ +G+R S+       +  ++ N   I  + +   I        
Sbjct: 126 TSNRVITRDIAILELLICTGIRVSEVSHLLKSNVFIRENTIIINGKGSKERIIYIDNQNL 185

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKF 292
           ++    + +L          FFIN     ++                ++   + H  R  
Sbjct: 186 IQSLLSYQRLFQDEIEKSPYFFINRLGHHLSEQSIRFMIVKYCHLFHIDSHITPHMFRHT 245

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324
            AT+  +       +    G  ++   + YT 
Sbjct: 246 FATMMLEEDVDIRYIQEILGHSSITTTQIYTH 277


>gi|260893196|ref|YP_003239293.1| integrase family protein [Ammonifex degensii KC4]
 gi|260865337|gb|ACX52443.1| integrase family protein [Ammonifex degensii KC4]
          Length = 391

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 51/345 (14%), Positives = 106/345 (30%), Gaps = 49/345 (14%)

Query: 11  VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT- 69
           V   +  +GK +Y  +   G R                 AL     K       R     
Sbjct: 17  VYLGKDENGKKLYRSQTVRGTR------------QDAERALAELLVKAHRGELGRAPRGL 64

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH- 128
           T+  L++ + + AH  S   N+  +  +      R  G  +  ++T   +   +      
Sbjct: 65  TVAGLLNAWVE-AHRRSWRPNTLANKRTAARAWGRLIGHLEVERLTPADVELALARLAEE 123

Query: 129 -TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
             PS+A +  +S R   +WA +++ +  +P   V  P+ +T+ I PWT E+  +F  +  
Sbjct: 124 YAPSTAKEVFSSFRQALRWARKRKLLHHDPTEGVPAPRGETQEITPWTGEEAARFLEYLE 183

Query: 188 EGSQPRLA---FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT--------------G 230
           +    +     F   L +G+R  +      Q +      +  ++T               
Sbjct: 184 KARMRKAYKAFFRLALATGMRLGELQALRWQDVDLKRGEVCVRRTYSEAGKCFHEPKTKK 243

Query: 231 TIITVELPD---------------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKA 275
               + +                   ++        +   F       ++        + 
Sbjct: 244 ARRRIPIDPVTTAWLREWRKEQLEERLRAGEGWADREGLVFTTRKGTVVDRDDLLRALRR 303

Query: 276 KATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
              +AGV     H +R   A++          +    G  +V   
Sbjct: 304 ACREAGVPGIRFHDLRHTHASLLLRQNVHPKVVQERLGHASVKTT 348


>gi|226227913|ref|YP_002762019.1| tyrosine recombinase XerC [Gemmatimonas aurantiaca T-27]
 gi|226091104|dbj|BAH39549.1| tyrosine recombinase XerC [Gemmatimonas aurantiaca T-27]
          Length = 324

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 45/285 (15%), Positives = 90/285 (31%), Gaps = 39/285 (13%)

Query: 85  GSLAVNSRISFESYFD----QIIRKSGDF-----DYRKITTKHIRSGVESRKHTPSSAIQ 135
             L+ N+  ++          +    G       +  +   +   + +  R     S  +
Sbjct: 30  RDLSPNTLQAYRRDLREFASWLAATHGIAGWEWNELTRTNIRGYMAHLTRRGLAKRSIAR 89

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----- 190
            L+++R  ++W  R E V +NP  +V  PK          +   +      +  +     
Sbjct: 90  QLSAVRSFYRWMHRDERVDVNPARAVGSPKLPRTLPAYLDRTQAETLMQHAATRAQSLEF 149

Query: 191 ---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFMKLLA 246
              +     E    SGLR S+     +  L      +K +  G     V L D   + L 
Sbjct: 150 TDVRNLAMLELFYSSGLRLSELRGVDLADLDLVSQQVKVRGKGRKERIVPLGDHAQRALR 209

Query: 247 MTPIGKETFFINNDKQKMNA---------TQFSIWFKAKATK-----------AGVNKSA 286
              + ++          +           ++      A+A +            G + + 
Sbjct: 210 NYLVKRDALIAQASGGAVGRRVARGAVFLSERGARISARAVQHAMVTLMSAVSEGADLTT 269

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330
           H +R   AT   DAGA    +    G  ++   + YT    DR++
Sbjct: 270 HSLRHTFATHLVDAGADLRAVQELLGHASISTTQIYTHTSVDRLK 314


>gi|330963555|gb|EGH63815.1| integrase family protein [Pseudomonas syringae pv. actinidiae str.
           M302091]
          Length = 325

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 50/314 (15%), Positives = 107/314 (34%), Gaps = 15/314 (4%)

Query: 18  HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISE 77
           +G      RK     +   +         + S + G   ++ ++++   + TTLK     
Sbjct: 9   NGTWRTKIRKKGYPSLSASF-DTKAEAQRWASEIEGDMSRKRFVDTREAESTTLKQAQDR 67

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF- 136
           Y +     +    +R            K G     +I +  +    ++R     S     
Sbjct: 68  YER--EVSAQKKGARQEKTRIKTWAESKYGTKSMAEIRSSDLAEYRDARLAEGMSTNTVR 125

Query: 137 --LTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPWTKEDMQQ-FKSFWSEGSQ 191
             L  +  L+  A++   +    NP   +  PK   E  R  T +++    K+  +  ++
Sbjct: 126 LSLALISHLYTVAIKDWGIEGLSNPVAKLRMPKGSRERDRRPTAKELAAVLKAASAIHAE 185

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251
             +  E  + + +R  +      +H++     ++  K G+   V L      LL   P  
Sbjct: 186 MPVIIELAIETAMRRGELMTLRREHIRGKHVLLEDTKNGSRRLVPLSIRARALLDSLPAR 245

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMAT 310
            +    +     ++    S +F      A V +   H +R    +   + G +  E  + 
Sbjct: 246 IDGAVFS-----LSPHSVSQYFLKSCRAAKVTDLHFHDLRHEGTSRLFEKGFSIMEAASI 300

Query: 311 YGWKTVDQAETYTK 324
            G KT+   + YT 
Sbjct: 301 TGHKTMSMLKRYTH 314


>gi|319404882|emb|CBI78483.1| integrase/recombinase XerD [Bartonella rochalimae ATCC BAA-1498]
          Length = 307

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 44/286 (15%), Positives = 99/286 (34%), Gaps = 33/286 (11%)

Query: 72  KWLISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVES 125
             +I  + +  +     +V + ++++        K         + +      + S ++ 
Sbjct: 4   DAVIDRFLEMMSAERGASVCTLLAYQHDLQWAQNKLSSHSISFFSAQREDLINLLSLMQK 63

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
                +S  + L+++R  F++   +     +P   ++ P++     +  +++ M +   F
Sbjct: 64  AGCAATSQARRLSTLRQFFQFLYAEGLREDDPSSDIDSPRQGRPLPKIISEDAMAKLLDF 123

Query: 186 WSEGSQP--------------RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
               ++               ++  E L  +GLR S+     VQ ++     I  +  G 
Sbjct: 124 AQLETEQAESGTQNYYRALRFQVLLEMLYATGLRISELVSLPVQAVRGKEQFILVRGKGE 183

Query: 232 IITVELPDG-----FMKLLAMTPIGKET----FFINNDKQKMNATQFSIW-FKAKATKAG 281
              V L         ++ L++    K+      F         A QF     K  A +AG
Sbjct: 184 KERVVLLSEKARQILLQWLSVRDQRKDATSIYLFPARSSTGYIARQFVARGLKDLAKRAG 243

Query: 282 V---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +   N S H +R   A+     GA    +    G + +   + YT 
Sbjct: 244 IQSENFSPHVLRHAFASHLLQNGADLRAVQHLLGHRDISTTQIYTH 289


>gi|312951578|ref|ZP_07770474.1| tyrosine recombinase XerC [Enterococcus faecalis TX0102]
 gi|310630544|gb|EFQ13827.1| tyrosine recombinase XerC [Enterococcus faecalis TX0102]
          Length = 299

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 39/265 (14%), Positives = 94/265 (35%), Gaps = 25/265 (9%)

Query: 85  GSLAVNSRISFE---SYFDQIIRKSGDFDY---RKITTKHIRSGVESRKHTPSSAIQFLT 138
              +  ++ +++    +F   ++ SG+ +Y     +  +   S +  ++++ +S  + + 
Sbjct: 18  RGYSEKTKKAYQEDIQHFFSFLKTSGNDNYLTVEHLEVRAYLSELYDQEYSRNSISRKIA 77

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRL 194
           S+R  +++ ++ E +  NP   V   K++    R + +++M               + + 
Sbjct: 78  SLRSFYQFLLKNEAIQENPFSYVHMKKKQLRLPRFFYEKEMDALFESAQGEQPLDLRNQA 137

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-ITVE------------LPDGF 241
             E L  +G+R S+     V  +      +     G     V             L +G 
Sbjct: 138 LLEVLYGTGIRVSECANLTVDAVDFQASVLLVHGKGNKDRYVPFGSFAQDALKDYLENGR 197

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
             L+          F+N+  +++  T           K+ +N     H +R   AT   +
Sbjct: 198 ALLMTKYQKKHPYVFVNHHGEQITPTGIEYVLNQLIKKSSLNVEIHPHMLRHTFATHLLN 257

Query: 300 AGATAHELMATYGWKTVDQAETYTK 324
            GA    +    G   +   + Y  
Sbjct: 258 NGADMRTVQELLGHANLSTTQIYAH 282


>gi|320105374|ref|YP_004180964.1| integrase family protein [Terriglobus saanensis SP1PR4]
 gi|319923895|gb|ADV80970.1| integrase family protein [Terriglobus saanensis SP1PR4]
          Length = 394

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 68/372 (18%), Positives = 133/372 (35%), Gaps = 40/372 (10%)

Query: 11  VTKERTRHGKIIYYFRKGH----GRRI-RLPYPHESTFIPAYMSA---LTGSTPKREYIN 62
           +T+E+ ++G  ++ +R       G+RI R         + +  +A   + G       I 
Sbjct: 13  LTREKRQNGSDVWVYRWRENGSSGQRINRKRIVGTVADLRSKAAAQKLVEGLRLDINAIV 72

Query: 63  SPRKKPTTLKWLISEYRKS--AHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHI 119
                  T+  LI+ Y ++  A   +    +R  +  + ++II    G +  + + T  I
Sbjct: 73  QTAPHSYTVAELITHYLETELAEKANKTALTRKVYRYHLEKIILPVWGKYRLQDVRTVAI 132

Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
              +ESR   PSS  +       LF+  +R E+V  NP   V +  ++       T+ ++
Sbjct: 133 ERWLESRPGAPSSKAKTRNIFSTLFRHGMRYEWVFSNPIELVRQGAKRLVEPDILTEAEI 192

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-------------- 225
           +       E    R        +GLR  +      Q +     +I+              
Sbjct: 193 RTLIEGLDE--PARTMVLVAAVTGLRRGELFGLRWQDVDFQGLTIRIACSLVDQVEGAPK 250

Query: 226 --TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS---IWFKAKATKA 280
             T +T   ++ EL     +    T    E+ ++ +    +    +    I  +  A  A
Sbjct: 251 TVTSRTSIPLSPELARALGEWKRTTHFTGESDWVFSSPASLGKQPYWPGMILRRHIAPAA 310

Query: 281 ---GVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIK 334
              G+NK    H  R+ +AT+   AGA+           +       Y +     +    
Sbjct: 311 QRLGINKKIGWHTFRRTTATLLFSAGASVKTTQELMRHASPSITLGLYAQAVTEDKRAAH 370

Query: 335 N--SRRISSVVD 344
           N  S+ I+ + D
Sbjct: 371 NALSKAIAGMTD 382


>gi|300173202|ref|YP_003772368.1| tyrosine recombinase XerC [Leuconostoc gasicomitatum LMG 18811]
 gi|299887581|emb|CBL91549.1| tyrosine recombinase XerC [Leuconostoc gasicomitatum LMG 18811]
          Length = 303

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 38/281 (13%), Positives = 93/281 (33%), Gaps = 32/281 (11%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQ----IIRKSGDFDYRKITTKHIRSGVE--- 124
           + L   Y +S      +  +  ++ S  D+    + +  G  +++ +    +R  +    
Sbjct: 6   QQLYQVYIESER--QYSPLTLKAYLSDIDEFVIFLTKNGGFINFKTVQILDVRVYLNDLY 63

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
            RK   ++  + ++S+R+ +++ +  ++V  NP  +V   K +      + + +M     
Sbjct: 64  ERKLARTTISRKISSLRMFYQFMIANQFVTDNPFDNVALRKHENHLPEFFYETEMTTLFD 123

Query: 185 FWSEG-----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELP 238
                      +     EFL  +G R ++        L  +    +   K      V   
Sbjct: 124 VAYNPEDLLWQRNAAILEFLYATGARVAEIANLMTTQLDFSQRLVLIHGKGNKDRYVPFG 183

Query: 239 DGFMKLLA-----------MTPIGKETFFINNDKQKMNATQFSI----WFKAKATKAGVN 283
               + L+              +  +  F+N+  + +     +       K       ++
Sbjct: 184 HFAAQALSQYLKETRPKLIAKQVPHDFVFVNHRGEPITTAGITYILNELMKRSTLTGKIH 243

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              H +R   AT   + GA    +    G   +   + YT 
Sbjct: 244 --PHMLRHTFATHLLNNGADMRTVQELLGHVNLSTTQMYTH 282


>gi|300114658|ref|YP_003761233.1| integrase family protein [Nitrosococcus watsonii C-113]
 gi|299540595|gb|ADJ28912.1| integrase family protein [Nitrosococcus watsonii C-113]
          Length = 321

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 50/274 (18%), Positives = 97/274 (35%), Gaps = 25/274 (9%)

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISF---ESYFDQIIRKSGDFDYRKITTKH 118
           ++   +  T   ++ +Y++       A+ ++      ES    +    GD+    IT   
Sbjct: 51  DTTEAQRITFNTILDKYKQ------RALITKRGIAQEESRIKYLKEWLGDYSLAGITPAV 104

Query: 119 IRSGVESRKHTPSS--AIQFLTSMRVLFKWAV-RQEYVAI--NPCLSVERPKRKTEGIRP 173
           +    + R  + ++      L+ +  +  +A+    Y     NP   +  PK      R 
Sbjct: 105 LSKFRDWRGLSVAAQTVKHDLSLISRIINYAIKDLGYSLPYGNPVQQIRMPKIPRGRTRR 164

Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGT 231
               + +      SE  QP     F L + +R  +      + +        I   KTG 
Sbjct: 165 LEPGEQELLLENASESLQP--VILFALETAMRRGEIANMEWRDVDLKQRTLHIPETKTGI 222

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVR 290
             T+ L    +K+L   P+G    F      K++A   +  F     KAG+ +   H +R
Sbjct: 223 PRTIPLSSEAIKILKEIPLGFGPIF------KVHADSMTKAFDRATNKAGIEDLRFHDLR 276

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             + +   + G    E+ +  G K +     YT 
Sbjct: 277 HEATSRLFEKGLNHTEVASITGHKDLKMLLRYTH 310


>gi|257881842|ref|ZP_05661495.1| integrase [Enterococcus faecium 1,231,502]
 gi|294619302|ref|ZP_06698771.1| integrase [Enterococcus faecium E1679]
 gi|257817500|gb|EEV44828.1| integrase [Enterococcus faecium 1,231,502]
 gi|291594462|gb|EFF25870.1| integrase [Enterococcus faecium E1679]
          Length = 382

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 69/382 (18%), Positives = 141/382 (36%), Gaps = 58/382 (15%)

Query: 14  ERTRHGKIIYYFRK--GHGRRI-RLPYPHESTFI--PAYMSALTGSTPKREYINSPRKKP 68
            + ++G+  +YF+   G      +  Y  +  F       +AL+    + +    P    
Sbjct: 7   YKKKNGEKAWYFKTYLGIDPLTGKKKYTTKRGFRTQKEAKTALSRLELELQKTGMPTSTN 66

Query: 69  TTLK-----WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
           TT K     WL   Y+K+    S +  ++I F  +   I  K G+    KI T + +  V
Sbjct: 67  TTFKEAAELWL-ESYKKTVKESSYS-RTKIIFNKH---IYPKFGNIKLSKINTAYCQKVV 121

Query: 124 ESRKHTPSSAIQ--FLTSMRVLFKWAVRQEYVAINPCLS--VERPKRKTEG-IRPWTKED 178
                  +S     F+  M  +FK+A+     + NP L+  + +P+ KTE  ++ +TKE 
Sbjct: 122 NDWSEKGTSKQYPLFINYMNKVFKYAINIGLTSDNPTLNLLIPKPQIKTEKKLKLYTKEQ 181

Query: 179 MQQFKSFWSEGS------QPRLAFEFLLYSGLRCSDSCRAGVQHL--------------- 217
           ++ F +  S+        +    F  L +SG R  +       ++               
Sbjct: 182 LELFLNEVSQEQNPYFKNRDYTLFRLLAFSGCRIGEILALTWDNINFKTNEMAIKKTVAR 241

Query: 218 -------------QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM 264
                        ++N      +KT   +     +    L  +        F N++    
Sbjct: 242 SDKYYISETPKTKKSNRIIYLDEKTIKQLKFWKLEQRKYLFQLGFTKANYLFTNDENNFT 301

Query: 265 NATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETY 322
                +  +     +AG+     HG R   A++  +AGA   E+    G   +    +TY
Sbjct: 302 INQSVAERYNIYRERAGLPYIGLHGFRHTHASMLYEAGADHKEVQERMGHANIKTTMDTY 361

Query: 323 TKGADRIRLGIKNSRRISSVVD 344
           T   +  +   + ++++++ ++
Sbjct: 362 THITNSKK--EETTQKLTNYIN 381


>gi|120435311|ref|YP_860997.1| phage integrase family protein [Gramella forsetii KT0803]
 gi|117577461|emb|CAL65930.1| phage integrase family protein [Gramella forsetii KT0803]
          Length = 385

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 43/263 (16%), Positives = 103/263 (39%), Gaps = 14/263 (5%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY--RKITTKHIRSGVESRKHTPSS 132
           I+ YR        + ++  ++ ++ ++ ++         +   ++ + + +  + ++ SS
Sbjct: 93  INAYRVYMKGLRYSQSTIKTYCTFTEKFLKFHNYKTTFSQNDVSRFMEAEIALKSYSISS 152

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
             Q +++++  F+++ + E+        + RPK+        +KE++       +   + 
Sbjct: 153 HRQCISALKHYFEFSDQAEFEIS----ELVRPKKSRFLPTVLSKEEIIDLL-RLTRNLKH 207

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLLA---M 247
           R     +  SGLR  +     ++ +  +     IK  K      V L + F+ LL     
Sbjct: 208 RCILALIYSSGLRVGELINLHLKDIDIDRKQILIKQAKGRKDRYVMLAESFLPLLYNYLQ 267

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAH 305
           T   K  F    D +K +++    + K    +A ++K  + H +R   AT   + G    
Sbjct: 268 TYEPKRYFTEGYDNKKYSSSAIRSFLKDSCRRAKISKKVTPHTLRHSFATHMLENGTDLR 327

Query: 306 ELMATYGWKTVDQAETYTKGADR 328
            +    G    +    YT  A +
Sbjct: 328 YIQELLGHSKPETTMIYTHVAKK 350


>gi|16272618|ref|NP_438836.1| site-specific tyrosine recombinase XerC [Haemophilus influenzae Rd
           KW20]
 gi|260581486|ref|ZP_05849296.1| tyrosine recombinase XerC [Haemophilus influenzae RdAW]
 gi|260582981|ref|ZP_05850764.1| tyrosine recombinase XerC [Haemophilus influenzae NT127]
 gi|1175024|sp|P44818|XERC_HAEIN RecName: Full=Tyrosine recombinase xerC
 gi|1573676|gb|AAC22336.1| integrase/recombinase (xerC) [Haemophilus influenzae Rd KW20]
 gi|260091846|gb|EEW75799.1| tyrosine recombinase XerC [Haemophilus influenzae RdAW]
 gi|260093965|gb|EEW77870.1| tyrosine recombinase XerC [Haemophilus influenzae NT127]
          Length = 295

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 39/260 (15%), Positives = 88/260 (33%), Gaps = 21/260 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRKHTPSSAIQFLT 138
             ++ ++  +++   D  I+     D    T       + I +  + +     S    L+
Sbjct: 16  RQMSPHTITNYQHQLDATIKILAQQDIHSWTQVTPSVVRFILAESKKQGLKEKSLALRLS 75

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS---FWSEGSQPRLA 195
           ++R    + V+Q  + +NP   +  PK+     +    E +QQ  +         + R  
Sbjct: 76  ALRRFLSFLVQQGELKVNPATGISAPKQGRHLPKNMDGEQVQQLLANDSKEPIDIRDRAI 135

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLLA 246
            E +  SGLR S+     +  +   +  ++    G    V          + +       
Sbjct: 136 LELMYSSGLRLSELQGLDLNSINTRVREVRVIGKGNKERVVPFGRYASHAIQEWLKVRAL 195

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATA 304
             P   E  F++    +++        +    + G+N   + H +R   AT   +A +  
Sbjct: 196 FNP-KDEALFVSQLGNRISHRAIQKRLETWGIRQGLNSHLNPHKLRHSFATHMLEASSDL 254

Query: 305 HELMATYGWKTVDQAETYTK 324
             +    G   +   + YT 
Sbjct: 255 RAVQELLGHSNLSTTQIYTH 274


>gi|17986820|ref|NP_539454.1| integrase/recombinase [Brucella melitensis bv. 1 str. 16M]
 gi|17982454|gb|AAL51718.1| integrase/recombinase [Brucella melitensis bv. 1 str. 16M]
          Length = 116

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 49/115 (42%), Gaps = 2/115 (1%)

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290
           + + +     ++L  TP   ET  +    +  +    +         A + K  + HG+R
Sbjct: 1   MFLPITPILSEVLEATPRQGETVLVTAYGEPFSPKSLTGRMADWTASAKLPKGFTLHGLR 60

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345
           K    I A+ GA+  ++M T G   +  AE YT+ A++ RL      R+  +  +
Sbjct: 61  KTLGKILAEGGASTRQIMDTLGHDDIAHAELYTREAEQARLATDGMSRVVRLKRN 115


>gi|270293959|ref|ZP_06200161.1| tyrosine type site-specific recombinase [Bacteroides sp. D20]
 gi|270275426|gb|EFA21286.1| tyrosine type site-specific recombinase [Bacteroides sp. D20]
          Length = 379

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 40/207 (19%), Positives = 76/207 (36%), Gaps = 14/207 (6%)

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVE---RPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
            +L ++R     AV ++Y+ +NP   ++   +PKR        T +++ +          
Sbjct: 165 YYLKTLRYCLNRAVSEDYITVNPMNKIKNEDKPKRNRTERDYLTIKELTRLVHTPFYNIL 224

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQ-----NNIFSIKTQKTGTIITVELPDGFMKLLA 246
            R AF F  + GLR  D      + ++     N + SI  +KT   I++ L     + + 
Sbjct: 225 LRKAFLFSCFCGLRHCDIIALRWEDIRYDENGNALLSIIQKKTKEAISLPL---CSEAIK 281

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWF-KAKATKAGVNK--SAHGVRKFSATISADAGAT 303
             P              + +   S         +AG++K  + H  R   AT+    G  
Sbjct: 282 HLPDRGNAPETEKVFAGLVSLGRSNVILHKWVEQAGISKHVTFHTARHTHATMMLTLGVD 341

Query: 304 AHELMATYGWKTVDQAETYTKGADRIR 330
            + +    G   +   + Y K  D  +
Sbjct: 342 LYTVSKLLGHTNIQTTQIYAKLVDESK 368


>gi|227544652|ref|ZP_03974701.1| phage integrase/recombinase [Lactobacillus reuteri CF48-3A]
 gi|300909431|ref|ZP_07126892.1| phage integrase family integrase/recombinase [Lactobacillus reuteri
           SD2112]
 gi|227185377|gb|EEI65448.1| phage integrase/recombinase [Lactobacillus reuteri CF48-3A]
 gi|300893296|gb|EFK86655.1| phage integrase family integrase/recombinase [Lactobacillus reuteri
           SD2112]
          Length = 322

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 39/262 (14%), Positives = 89/262 (33%), Gaps = 14/262 (5%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129
            I++Y  +      +  +   +++    +    G    +KITT+ +R  +    +SR  +
Sbjct: 47  YITDYLAAKQVEGCSEKTINYYQATLKMMFSYLG-KHVQKITTEDLRDYLGNYQQSRNSS 105

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
             +           F W   ++ +  +P   + + K   +    ++ ED+++ +   +  
Sbjct: 106 RVTIDNIRRIFSSFFSWLEDEDVIIKSPVRRIHKVKSSAKVKDTYSDEDLERLRDHCNS- 164

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG-----FMKL 244
            +     + L  +G+R  +        +  +         G    +   D          
Sbjct: 165 ERDVAMIDILASTGMRIGELVHLNQNDINFDERECVVLGKGNKQRIVYFDARSKIHLQNY 224

Query: 245 LAMTPIGKETFFINND--KQKMNATQFSIWFKAKATKAGVNKS-AHGVRKFSATISADAG 301
           LA         F++     Q+M+        K    +AG+ K   H  R+  AT + D G
Sbjct: 225 LAKRKDANSALFVSLHVPHQRMSINGIENRLKNLGKRAGIAKVYPHKFRRTLATNAIDKG 284

Query: 302 ATAHELMATYGWKTVDQAETYT 323
               ++    G + +D    Y 
Sbjct: 285 MPIEQVQKLLGHERIDTTLHYA 306


>gi|227524410|ref|ZP_03954459.1| phage integrase family site specific recombinase [Lactobacillus
           hilgardii ATCC 8290]
 gi|227088641|gb|EEI23953.1| phage integrase family site specific recombinase [Lactobacillus
           hilgardii ATCC 8290]
          Length = 401

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 49/368 (13%), Positives = 111/368 (30%), Gaps = 50/368 (13%)

Query: 15  RTRHGKIIYYFRKG--HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           R +     Y F  G  +G+R R+          A               +  +     ++
Sbjct: 23  RKKGNNWYYAFDTGTLNGKRSRIERSGGKKKKQAEAPLRQALQKYENDGSVAKLTNMNVQ 82

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
                + ++     L  N++I++ +  +  II K G+F  R I    +++ V     T  
Sbjct: 83  QYFMYWYENYVQRELKPNTQINYLNIINKYIIPKIGNFRIRSIGPAALQNLVNDLGET-K 141

Query: 132 SAIQFLTSMRVLFKWAVRQ-----EYVAINPCLSVERPK------RKTEGIRPWTKEDMQ 180
            A   +  + ++ K   ++     + +  +P   +  PK         + ++  T    +
Sbjct: 142 LAKHTVQIIVMVIKEGFKKAVYPYQLIKEDPARYIIMPKYHDDERITRKKLKIITMNQYE 201

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-----------------NNIFS 223
           Q  S     +   +  +    +G+R  + C     ++                       
Sbjct: 202 QILSITPPSNPFYIPLQIAFGTGMRRGEVCGLTWTNVDLNGHTIEVKQAMMQESKGKFSI 261

Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKE--------------TFFINNDKQKMNATQF 269
           +  + T +  T+ + +  + LL      +                     +   +     
Sbjct: 262 VTPKTTSSYRTISIGESLVDLLRQHKKHQMEERLRYGQYYHESNFVCTKENGIPVTPNTI 321

Query: 270 SIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGW----KTVDQAETYTKG 325
                    + G   + H +R   AT+  + GA   ++ A  G      T+D     T  
Sbjct: 322 KYQCDRIQKELGFPFNFHSLRHTHATMLLEHGANIKDIQARLGHSRIATTMDTYSHVTHK 381

Query: 326 ADRIRLGI 333
             R  + I
Sbjct: 382 MQRQTVNI 389


>gi|210622505|ref|ZP_03293210.1| hypothetical protein CLOHIR_01158 [Clostridium hiranonis DSM 13275]
 gi|210154218|gb|EEA85224.1| hypothetical protein CLOHIR_01158 [Clostridium hiranonis DSM 13275]
          Length = 302

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 49/291 (16%), Positives = 112/291 (38%), Gaps = 24/291 (8%)

Query: 72  KWLISEYRKSAHWGS-LAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVES 125
             LI EY +       L++N+  S+ +   +      +      D  +    +    +E 
Sbjct: 12  DNLIKEYIEYIENKRKLSLNTVSSYRADLKKYKDYLEENNIDIKDVVETDILNYLVELEK 71

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
              + S+  +  +S++    +    +  AI+P  ++++PK K E +   T+E+++   +F
Sbjct: 72  NNTSVSTIARTTSSIKSFHDYLFFSKICAIDPAKNIKKPKIKKETVEILTEEEIEALLNF 131

Query: 186 WSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241
            +  S    + +  FE L  +G++ S+     V+ +   + SI    +     + L D  
Sbjct: 132 ENLDSNKLKRDKAIFEVLYGTGMKVSELIDLNVEDVDFEMGSITCSSSKNKRVIPLIDVT 191

Query: 242 MKLLA---------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHG--VR 290
            K L          +   G+   F++    +          K  + KA ++K+ +   +R
Sbjct: 192 KKYLELYVNEARENVVADGENALFVSALGHRFTRQGLWKIIKKYSKKANIDKNINPTMLR 251

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGAD---RIRLGIKNSRR 338
              A    + GA    +    G   +   ++Y    D   R  + +++ R+
Sbjct: 252 HSFAIHMINKGANIASVNKILGNTNLSSIQSYLSCIDQNMRKEMNLRHPRK 302


>gi|126663869|ref|ZP_01734864.1| putative tyrosine recombinase [Flavobacteria bacterium BAL38]
 gi|126624133|gb|EAZ94826.1| putative tyrosine recombinase [Flavobacteria bacterium BAL38]
          Length = 580

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 42/267 (15%), Positives = 88/267 (32%), Gaps = 16/267 (5%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFK 145
           + + ++  ++   F Q +R     +  +I+ + I   + S      SA    + +  + +
Sbjct: 309 NYSSSTLRTYCGAFIQFLRYFAFRNPEEISREEIIRFLGSLMERGLSATSGHSMVNGV-Q 367

Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLR 205
           +  +Q     +    + RPK++ +     T E+              +L       +GLR
Sbjct: 368 FYYQQVLGKRDFTFVLPRPKKEKKLPVVLTMEECLLIFKVVDNPKH-KLLLLIGYGAGLR 426

Query: 206 CSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGF---MKLLAMTPIGKETFFINND 260
            S+        +  + +   +K  K      V LP      ++L      GK   F    
Sbjct: 427 VSEIVSLKWSDILFEEHKIHVKNAKGKKDRMVMLPYSIVSSLQLYRELYKGKLYVFEGQF 486

Query: 261 -KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVD 317
             +  +        +     +G+ K  + H +R   AT   + G     +    G  ++ 
Sbjct: 487 AGEPYSTGSVQQVMRTALKLSGLEKKATVHTLRHSFATHLLENGTDIRYIQQFLGHSSIK 546

Query: 318 QAETYTKGADRIRLGIKNSRRISSVVD 344
               YT       L      +I S +D
Sbjct: 547 TTTVYTH------LTKTAVDKIQSPLD 567


>gi|330836614|ref|YP_004411255.1| Tyrosine recombinase xerC [Spirochaeta coccoides DSM 17374]
 gi|329748517|gb|AEC01873.1| Tyrosine recombinase xerC [Spirochaeta coccoides DSM 17374]
          Length = 310

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 48/286 (16%), Positives = 95/286 (33%), Gaps = 36/286 (12%)

Query: 85  GSLAVNSRISFES-------YFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSSAIQF 136
             L+ ++  ++         + ++      D     I    +    E RK  +P +  + 
Sbjct: 17  KGLSAHTEKAYRHDLFVFGEFLEKFSISVHDVSPSDI-RSFLVWLPERRKDFSPGTVQRL 75

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-WSEGSQPR-- 193
            +++   + + VR+  +  NP   +              K + ++  +  W++ S  R  
Sbjct: 76  KSTINGFYTYVVRRGKIEKNPVALISLRSASRRLPTVLEKSETERLLNLPWNDFSSLRDV 135

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGFMKLL------- 245
           L    L  +G R S+     V  L+     I    K G    V L     KLL       
Sbjct: 136 LILNLLYSTGCRRSELLAIDVDDLETGQERILIHGKGGRERYVFLTPRVTKLLGKYLSER 195

Query: 246 -----AMTPIGKE-----TFFINND---KQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290
                 + P  KE        ++N     ++++    +  F     +  ++K  + H +R
Sbjct: 196 KELLSRLEPAEKEGADWNALLLSNGRRKGKRLSTGIITSIFGKYKRELEIHKAFTPHVLR 255

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKN 335
              AT   D  A    +    G   +   + YT   A+R+R     
Sbjct: 256 HTFATHLLDNDAGIRTVQELLGHVNLSTTQIYTHVSAERLRKVYDA 301


>gi|310766358|gb|ADP11308.1| site-specific tyrosine recombinase XerC [Erwinia sp. Ejp617]
          Length = 351

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 44/289 (15%), Positives = 100/289 (34%), Gaps = 32/289 (11%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFE---SYFDQIIRKSGDFDYRKITTKHIRSGVE-- 124
           TL+ L   +         +  +   +      F       G     +++   + +     
Sbjct: 20  TLRRLAESWLAHLAAAGRSARTVQGYGERVRAFLAWCELRGITYAPQVSLAVLEAYQRWL 79

Query: 125 ---SRKHTPSSA----IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI-RPWTK 176
               R      A       L+++R+L +W +++ ++  NP   +E PK +     + +++
Sbjct: 80  QSYRRADGRRLAVNGQRHLLSAIRMLLRWLLKRHHILYNPAELLELPKEERRLPAQVFSE 139

Query: 177 ED----MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTG 230
           E+    +Q   +    G + R   E L  +G+R ++     +  +     + +++  K G
Sbjct: 140 EETRRVLQSLDAGTPPGLRNRAILELLWSTGIRRTELAGLLLSDVDFTRGVVNVRRGKGG 199

Query: 231 TIITVEL----PDGFMKLLA------MTPIGKETFFINNDKQKMNATQFSIWF-KAKATK 279
               V +         + L                FI++    +     +    +A    
Sbjct: 200 KDRVVPVGHAALMWLARYLKDVRPRLAQRFDSGHLFISHKGTGLAHGTLTAMAGRAIREG 259

Query: 280 AGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           A + K+   H  R   AT   + GA    + A  G + ++  + YT+ A
Sbjct: 260 AHLKKAGACHIFRHSMATQMLENGADTRHIQAILGHEKLETTQIYTRVA 308


>gi|295675162|ref|YP_003603686.1| tyrosine recombinase XerC [Burkholderia sp. CCGE1002]
 gi|295435005|gb|ADG14175.1| tyrosine recombinase XerC [Burkholderia sp. CCGE1002]
          Length = 307

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 47/289 (16%), Positives = 88/289 (30%), Gaps = 33/289 (11%)

Query: 75  ISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTP 130
           I+ Y     H   L+ ++   +     ++   +       +T   IR  V        T 
Sbjct: 7   IAAYLSHLEHERRLSEHTLRGYTHELAELKLLAKGRPLESLTAVDIRGAVARAHAGGLTA 66

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK----SFW 186
            S    L++ R  ++W      +  NP  +V  PK+     +  + +D  +      +  
Sbjct: 67  RSIGHRLSAWRAFYRWLAGHVELPANPVAAVRAPKQAKTLPKALSVDDTARLMDSPPADS 126

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRA-------------GVQHLQNNIFSIKTQKTGTII 233
            EG +     E    SGLR ++                 G   L +    +   K     
Sbjct: 127 PEGLRDHAMLELFYSSGLRLAELVGLDVRFADVDGYRSAGWLKLDSGEVEV-LGKGNRRR 185

Query: 234 TVELPDGFMKLLAMTPIGKE--------TFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284
            V +    +  L      +E          F++    +++        K  A  AG+   
Sbjct: 186 VVPVGSKAVAALNAWLAVRERMVRHDPHPLFLSARGNRLSPNVVRERVKRAALAAGIPAN 245

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
              H +R   AT    +      +    G  ++   + YT G D   L 
Sbjct: 246 VHPHVLRHSFATHVLQSSGDLRAVQELLGHASITATQVYT-GLDFQHLA 293


>gi|260438241|ref|ZP_05792057.1| tyrosine recombinase XerD [Butyrivibrio crossotus DSM 2876]
 gi|292809434|gb|EFF68639.1| tyrosine recombinase XerD [Butyrivibrio crossotus DSM 2876]
          Length = 306

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 34/280 (12%), Positives = 94/280 (33%), Gaps = 27/280 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRV 142
             L   +  ++++   Q  ++        +T   + + +    + +   +  + + S++ 
Sbjct: 19  KRLDRKTLNAYKTDLKQFSQQLHSISIEAVTPDMLENYISHLHQSYKSKTVKRKIASLKA 78

Query: 143 LFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQQFKS------FWSEGSQPR-- 193
            F +   +E +  NP   +  + +      +      ++ F +        ++ +  R  
Sbjct: 79  FFHYLKYKEIIDRNPFDKIHVKFREPVILPKTIPLRTVETFLATIYHQRNCAKTTYQRRN 138

Query: 194 -----LAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKT-------GTIITVELPD 239
                   E L  +G+R S+ C   V  +   +    I  + +       G    + +  
Sbjct: 139 AIRDIAVIELLFSTGIRISELCSLNVNDVNLQDGTILIYGKGSKERCMHIGNDKVLSVLL 198

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS 297
            + +  ++     + FF+N   + ++           +  A +    + H  R   AT  
Sbjct: 199 EYKQEYSIEIQNCKHFFVNQSGRFLSDQAVRRMINKYSALAAIELHITPHMFRHTFATCL 258

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
            +A      +    G  +++  E YT  A   +  I  ++
Sbjct: 259 LEADVDIRYIQEMLGHSSINITEIYTHVAMSKKKDILTTK 298


>gi|225873175|ref|YP_002754634.1| phage integrase family protein [Acidobacterium capsulatum ATCC
           51196]
 gi|225792791|gb|ACO32881.1| phage integrase family protein [Acidobacterium capsulatum ATCC
           51196]
          Length = 425

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 59/313 (18%), Positives = 111/313 (35%), Gaps = 25/313 (7%)

Query: 50  ALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF 109
           A T S      I+     P  ++  +  +  +     +   +   + +   ++    G  
Sbjct: 99  AATHSARILASISKVHDAPAIIETAVQAFLANCETNGVREPTIRKYRNSLRRLATFMGSK 158

Query: 110 D---YRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK- 165
           D    R +T   + S   SR+  P ++++ L ++R  F + + ++    N  L ++ PK 
Sbjct: 159 DIHYVRDVTVTLLDSFRASRELAPITSLKELETLRAFFSYCMARDLCKANIALMIKGPKI 218

Query: 166 RKTEGIRPWTKEDMQ-------QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218
                + P+T E+++       QF     E  +       L ++ LR SD        + 
Sbjct: 219 VSPNDVEPYTPEEVELIIAATQQFGRNAYERKRALAIILTLRFTALRISDVAVLRRDRIS 278

Query: 219 NNIFSI----KTQKTGTIITVELPDGFMKLLAMTPIGKET-------FFINNDKQKMNAT 267
                     +  K    + + +P    + L   P+ +E        F+      +   T
Sbjct: 279 KEGGRWVVFIRATKNNKRVYLPIPREMKEALDNVPVPREAMADCPYYFWSGKSTVRSIVT 338

Query: 268 QFSIWFKAKATKAGVNKS-AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-- 324
                  A   K+GV K+ AH  R   AT    AGA+  E+    G       + Y K  
Sbjct: 339 VIGESVGAVFKKSGVKKAHAHRFRHTLATELLAAGASFEEVADVLGDSVDVVKKHYAKWS 398

Query: 325 GADRIRLGIKNSR 337
            A + R+    SR
Sbjct: 399 EARQARVTDLLSR 411


>gi|120403198|ref|YP_953027.1| site-specific tyrosine recombinase XerC [Mycobacterium vanbaalenii
           PYR-1]
 gi|119956016|gb|ABM13021.1| tyrosine recombinase XerC subunit [Mycobacterium vanbaalenii PYR-1]
          Length = 319

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 42/268 (15%), Positives = 92/268 (34%), Gaps = 28/268 (10%)

Query: 85  GSLAVNSRISF----ESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT---PSSAIQFL 137
              + ++R ++     + FD +  +      R +T   +RS + ++       S+  +  
Sbjct: 35  RGRSEHTRRAYLGDVRALFDFLAERRPGTGLRGLTLPVLRSWLAAQATAGAARSTLARRT 94

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS------- 190
           ++++    WAVR+  +  +P   ++ PK +        ++  ++       G+       
Sbjct: 95  SAVKTFTAWAVRRGLMTEDPAARLQVPKARRTLPSVLRQDQAREAMDAAKSGAQQGDPLA 154

Query: 191 -QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM- 247
            + RL  E L  +G+R S+ C   +  +      ++   K     TV   D     L   
Sbjct: 155 LRDRLIVEMLYATGIRVSELCGLDIDDVDTARRLLRVLGKGNKQRTVPYGDPAHAALTAW 214

Query: 248 ---------TPIGKETFFINNDKQKMNATQFSIWFKA--KATKAGVNKSAHGVRKFSATI 296
                    T        +     +++  Q          A     +   HG+R  +AT 
Sbjct: 215 LSDGRPALVTAGSGAALLLGARGGRLDPRQARTVVHQTMAAVSGAPDIGPHGLRHSAATH 274

Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324
             + GA    +    G  ++   + YT 
Sbjct: 275 LLEGGADLRVVQELLGHSSLATTQLYTH 302


>gi|319902638|ref|YP_004162366.1| integrase family protein [Bacteroides helcogenes P 36-108]
 gi|319417669|gb|ADV44780.1| integrase family protein [Bacteroides helcogenes P 36-108]
          Length = 379

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 50/279 (17%), Positives = 96/279 (34%), Gaps = 33/279 (11%)

Query: 87  LAVNSRISFESYFDQIIRKSGDFDYRKITTKH--------IRSGVESRKHTPSSAIQFL- 137
            + ++  + +     II     +D + I  +             ++  K     A + L 
Sbjct: 100 QSGSTNRAKKDILQAIIHHLKRYDPQGILLEKIDKSYILGFIEYLKKAKQQHHKAEKGLH 159

Query: 138 --------TSMRVLFKWAVRQEYVAINPCLSVE---RPKRKTEGIRPWTKEDMQQFKSFW 186
                     +R     AV +EY++ NP   ++   +PK         T  ++++     
Sbjct: 160 TNTQLYYFKMLRYCLNHAVSEEYISENPINKIKNEEKPKNHKREREYLTISELKRLVRTP 219

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-----NNIFSIKTQKTGTIITVELPDGF 241
                 + AF F  + GLR  D      +++      N   SI  QKT   I++ L    
Sbjct: 220 FYNKLLKQAFLFSCFCGLRHCDIAALKWKNIHYDDAHNASLSIVQQKTQEAISLPLSHEA 279

Query: 242 MKLL--AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS 297
           +K L         +T F       ++ ++ +I     A +A + K  + H  R   AT+ 
Sbjct: 280 VKYLPERDMAQDDDTVFAGL----ISLSRSNIILDKWAKQADIQKHITFHVARHTHATML 335

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
              GA  + +    G   +   + Y K  D  ++     
Sbjct: 336 LTLGADLYTVSKLLGHTNIQTTQIYAKIVDESKVKAIAL 374


>gi|299533133|ref|ZP_07046518.1| phage integrase [Comamonas testosteroni S44]
 gi|298718910|gb|EFI59882.1| phage integrase [Comamonas testosteroni S44]
          Length = 348

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 41/292 (14%), Positives = 88/292 (30%), Gaps = 41/292 (14%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQI--IRKSGDFDYRKITTKHIRSGVESR---K 127
           ++  Y +       LA  +   +     ++    ++   +   +   HIR          
Sbjct: 19  VVHSYLEHVRVQKRLAERTHTLYALDLIKLQSFAQAAAQELLTLQPSHIRRFAAQMHGAG 78

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            +       L+  R  F+WA ++E V  NP   V  PK      +    +D  Q  SF +
Sbjct: 79  RSARGIALILSGWRSFFRWAAQRELVPFNPVEGVRGPKAAKPLPKALAVDDAVQLASFQN 138

Query: 188 E------GSQPRLAFEFLLYSGLRCSDSCRAGV------QHLQNNIFSIK------TQKT 229
                   ++     E L   GLR ++     +      +H       ++        K 
Sbjct: 139 PEADPWMEARDVAMTELLYSCGLRVAELVGLDLRPDQQSRHEGRGWIDLEAGDAHVQGKG 198

Query: 230 GTIITVELPD---------------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274
                V +                   +    +    +   F+    ++++A       K
Sbjct: 199 SKRRIVPVGRMAILALQRWLALRSCALVGAAQLKAQDEAALFVGRRGERLSAQSVWSRLK 258

Query: 275 AKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            +  +AG+      H +R   A+    +      +    G  ++   + YT+
Sbjct: 259 QRGQQAGLATGVHPHVLRHSFASHMLQSSGDLRAVQELLGHSSIATTQIYTR 310


>gi|262376584|ref|ZP_06069812.1| tyrosine recombinase XerC [Acinetobacter lwoffii SH145]
 gi|262308294|gb|EEY89429.1| tyrosine recombinase XerC [Acinetobacter lwoffii SH145]
          Length = 305

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 46/292 (15%), Positives = 99/292 (33%), Gaps = 38/292 (13%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVESR----K 127
           L++ + K     + + ++  ++       +   +    +   +    +R  +  +    +
Sbjct: 6   LLNMWLKEREIQNQSKHTLQAYARDVSDFLEFCQREQLNLNDVEATDLRQFLAEKVEQHQ 65

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI-------------RPW 174
            +PSS  + L+S+R   KWA + +++A NP    +  ++                  +P 
Sbjct: 66  LSPSSLQRMLSSIRQFMKWAEQAQHLAFNPADDFQLKRQSRPLPGMVDIETVNQIIDQPA 125

Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTII 233
            + ++QQ    W    + +   E L  SGLR ++     ++ +  N   ++ T K     
Sbjct: 126 PENEIQQ--QMW---LRDKAILELLYSSGLRLAELQNLRIKDIDFNRQLLRITGKGNKTR 180

Query: 234 TVELPDGFMKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV- 282
            V         +              + +   FI      + A Q     K +A +AGV 
Sbjct: 181 IVPFGSKAKASVMAWLQVYPLWNGDFVPEANVFITQKGNPLGARQIENRVKFQAQRAGVN 240

Query: 283 -NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
            +   H +R   A+           +    G   +   + YT   D   L  
Sbjct: 241 VDLHPHLLRHCFASHMLSNSRDLRAVQEMLGHSNLSTTQIYTH-VDFDHLAQ 291


>gi|239833075|ref|ZP_04681404.1| tyrosine recombinase XerD [Ochrobactrum intermedium LMG 3301]
 gi|239825342|gb|EEQ96910.1| tyrosine recombinase XerD [Ochrobactrum intermedium LMG 3301]
          Length = 313

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 46/276 (16%), Positives = 95/276 (34%), Gaps = 36/276 (13%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKH---TPSSAIQFLTS 139
              A N+  S+    + +         +  +    H+RS +++        +S  + L++
Sbjct: 20  RGAARNTLESYRRDLEAVAEAMAARGVNLAEAGADHVRSAIDAMAAEGFAATSQARRLSA 79

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-----SEGSQPRL 194
           +R  F++   + Y   +P  +V+ PK++    +  + E++ +            G    L
Sbjct: 80  LRQFFRFLYSEGYRQDDPTGTVDAPKKQKPLPKIMSVENVTRLLDRAVLEADEPGGPADL 139

Query: 195 ------------AFEFLLYSGLRCSDSCRAGVQ-HLQNNIFSIKTQKTGTIITVELPDGF 241
                         E L  +GLR S+     V     ++ F +   K      V L    
Sbjct: 140 TSDRLRALRLHALLETLYATGLRVSELVGLPVTVARTDHRFLLVRGKGSKERMVPLSPKA 199

Query: 242 MKLLAM-------TPIGKETFFIN---NDKQKMNATQFSIWFKAKATKAGVNKSA---HG 288
            + L          P   +  ++    ++   +    F+   K  A +AG++ SA   H 
Sbjct: 200 REALQRFLALRDSLPGSDDNPWLFPAFSESGHLARQVFARELKGLAARAGLSASAVSPHV 259

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +R   A+     GA    +    G   +   + YT 
Sbjct: 260 LRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTH 295


>gi|149908511|ref|ZP_01897173.1| tyrosine recombinase [Moritella sp. PE36]
 gi|149808345|gb|EDM68282.1| tyrosine recombinase [Moritella sp. PE36]
          Length = 333

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 29/272 (10%), Positives = 86/272 (31%), Gaps = 27/272 (9%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRKHTP 130
            Y  S     L++++  ++  +      +       +         + + +       +P
Sbjct: 40  RYITSER--QLSLHTVRNYRRHLILFAEQMLTLPITEWRALDASQVRKLATLNHKLGLSP 97

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG- 189
            S    L+++R    + V Q  +  NP   V  P++     +    +++ Q  S  +   
Sbjct: 98  RSLATKLSALRSFCDYLVLQGDLTANPAKGVSAPRQHKPLPKNLDVDEINQLLSVSNAVE 157

Query: 190 -------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241
                   + +   E +  +GLR  +     +  ++    +++   K      + +    
Sbjct: 158 SDDPFLVLRDKAMMELMYSAGLRLDELVNLDLTDVKLREKTMRVIGKGNKQRQLPIGSIA 217

Query: 242 MKLLAM--------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRK 291
           +  L              +   F++  +++++             +  +  + + H +R 
Sbjct: 218 ITALQAWLAVRGEYADNAQPALFVSQLRRRISHRSVQSRMAKWGQQQTLTSHVNPHKLRH 277

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYT 323
             AT   ++      +    G   +   + YT
Sbjct: 278 SFATHMLESSGDLRAVQELLGHANISTTQIYT 309


>gi|187930268|ref|YP_001900755.1| integrase family protein [Ralstonia pickettii 12J]
 gi|187727158|gb|ACD28323.1| integrase family protein [Ralstonia pickettii 12J]
          Length = 351

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 46/284 (16%), Positives = 101/284 (35%), Gaps = 21/284 (7%)

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119
           Y++    +  T+   +  Y +          ++ S       +    G +    ++   +
Sbjct: 50  YLSRAPSEKLTVAGALKRYMEEVSVTK-KPTTQRSERFTAQHLEAFFGKYSMAAVSADLV 108

Query: 120 RSGVESRKHTPSSAIQF---LTSMRVLFKWAVRQEY---VAINPCLSVERPKRKTEGIRP 173
               ++R     S       L  +  LF+ A+ QE+   +  NP  ++ +P       R 
Sbjct: 109 AKYRDARLAAGKSNNTVRIELAMLGHLFRTAI-QEWSIGLTFNPVANIRKPSPGAGRDRR 167

Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNI--FSIKTQKT 229
            + ++  +  +  S  S P L +   L   +G+R S+        +  N    +++  K 
Sbjct: 168 LSLDEQARLFAAVSAHSNPMLGWIVSLAVETGMRSSEIATLRRSQVDLNRRVVTLRDTKN 227

Query: 230 GTIITVELPDGFMKLLAMT------PIGKETFFINNDKQ--KMNATQFSIWFKAKATKAG 281
           G+   V L      +L +       P+  +  F     +  K     F   + +     G
Sbjct: 228 GSARVVPLTRAAADVLQLALGNPIRPLDSDLVFFGEPGRDGKRRPYVFQKLWASIVRDMG 287

Query: 282 V-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           + +   H +R  + +   +AG +  E+ A  G K++   + YT 
Sbjct: 288 LADLHFHDLRHEAVSRLVEAGLSDQEVAAISGHKSMQMLKRYTH 331


>gi|309702146|emb|CBJ01461.1| phage integrase [Escherichia coli ETEC H10407]
          Length = 376

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 41/264 (15%), Positives = 84/264 (31%), Gaps = 24/264 (9%)

Query: 73  WL--ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE--SRKH 128
           WL  +  Y+KS          +         +    G    R IT   +         K 
Sbjct: 102 WLPDLQLYKKSP---------QSELSKLNLYVRPFWGKRQLRDITAGELEQYAAGLREKL 152

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF-KSFWS 187
            PS+  + L  +  +   AVR  ++  +P   V   K      R  +  ++ +F  +  +
Sbjct: 153 RPSTVNRILAILSKICSLAVRAGWITHSPMSHVRYLKENNIRYRTLSATEIPRFIDAATA 212

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
             +    +    LY+G+R  + C    +  H   +   +   K+G   T  L    + ++
Sbjct: 213 LQTPAADSILLALYTGMRIGEVCTLKWEYWHPDMHQLILPDTKSGHPFTCPLAPPAIAVV 272

Query: 246 AMTPI---GKETFF--INNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISAD 299
                    K   F  + ++ + +   + +  F      A ++    H +R+  AT    
Sbjct: 273 QCQQDLMLSKTYIFPRLTDNARPLAYPRAT--FARICRDADIDNLRMHDLRRTFATRVLQ 330

Query: 300 AGATAHELMATYGWKTVDQAETYT 323
           A              ++     Y 
Sbjct: 331 ATGDIAIASHLLNHHSLTATRRYA 354


>gi|262278120|ref|ZP_06055905.1| site-specific recombinase XerC [Acinetobacter calcoaceticus
           RUH2202]
 gi|262258471|gb|EEY77204.1| site-specific recombinase XerC [Acinetobacter calcoaceticus
           RUH2202]
          Length = 310

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 49/279 (17%), Positives = 97/279 (34%), Gaps = 27/279 (9%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVESR---- 126
            L+S + K     + + ++  ++E      +        D R +    +R  +  R    
Sbjct: 10  QLLSMWLKERKIQNQSEHTITAYERDVKSFLEFCDLKQIDLRNVEASDLREYLAQRVEQD 69

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
           + + SS  + LTS+R   KWA + +Y+ INP    +  ++          E + Q     
Sbjct: 70  QLSSSSMQRHLTSIRQFMKWAEQGKYLEINPTDDFKLKRQPRPLPGMIDIETVNQILDQP 129

Query: 187 SEG--------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV--- 235
                       + +   E L  SGLR ++     ++ +  N   ++    G    +   
Sbjct: 130 MPEKPVDQQLWLRDKAMLELLYSSGLRLAELQGLTIKDIDFNRQLVRITGKGNKTRIVPF 189

Query: 236 --ELPDGFMKLLAMTPIGKETF------FINNDKQKMNATQFSIWFKAKATKAGV--NKS 285
             +  +  +  L +  I K  F      FI+     +   Q     K +A +AGV  +  
Sbjct: 190 GKKAKESLLNWLKIYKIWKGHFDQNAFVFISQRGGVLTPRQIEKRVKLQAQRAGVNVDLH 249

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            H +R   A+    +      +    G   +   + YT 
Sbjct: 250 PHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTH 288


>gi|77163593|ref|YP_342118.1| Phage integrase [Nitrosococcus oceani ATCC 19707]
 gi|254435225|ref|ZP_05048732.1| site-specific recombinase, phage integrase family [Nitrosococcus
           oceani AFC27]
 gi|76881907|gb|ABA56588.1| Phage integrase [Nitrosococcus oceani ATCC 19707]
 gi|207088336|gb|EDZ65608.1| site-specific recombinase, phage integrase family [Nitrosococcus
           oceani AFC27]
          Length = 251

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 39/208 (18%), Positives = 78/208 (37%), Gaps = 11/208 (5%)

Query: 127 KHTPSSAIQFLTSMRVLFKWAV-RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           + +P S  ++L ++   F  AV    ++  +P   + + K     +R  +  + ++    
Sbjct: 25  QRSPGSVNRYLAALSHTFTIAVKEWGWLEDSPMGRISKLKEPRGRVRFLSDSERERLLKA 84

Query: 186 WSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVEL---- 237
               S   L  A    L +G R  +      +++     + S+   K G    + L    
Sbjct: 85  CRGSSNSFLYPAVVLALSTGARRMEIMALRWRNVDLQRGLISLHETKNGERRALPLAGHA 144

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATI 296
            D   +L  +  I  +  F +N   +        W +    +AG+ +   H +R  +A+ 
Sbjct: 145 LDCVKRLSKVRQIDTDLLFPSNHNPQQPLDLRKPW-EIALKQAGIEDFRWHDLRHSAASY 203

Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324
            A  GAT  E+    G KT+   + Y  
Sbjct: 204 LAMNGATLAEIAEVLGHKTLQMVKRYAH 231


>gi|291542679|emb|CBL15789.1| Site-specific recombinase XerD [Ruminococcus bromii L2-63]
          Length = 327

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 51/271 (18%), Positives = 96/271 (35%), Gaps = 24/271 (8%)

Query: 99  FDQIIRKSGDFDYRKITTKHIRSGVE-------SRKHTPSSAIQFLTSMRVLFKWAVRQE 151
           FD+I  K  D D   I T ++    +        R +  +S  +  +S++  FK+    +
Sbjct: 58  FDEI--KIDDVDLDLIKTVNLELAYDYMNFLYRDRNNKSASRARKCSSLKGFFKYITNNK 115

Query: 152 -YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR--LAFEFLLYSGLRCSD 208
             +  NP   +E PK K    +  T E   +  +     ++ R        L  GLR S+
Sbjct: 116 HLLDTNPVEQLESPKNKKALPKYLTLEQSIELLNAVDGNNKQRDYCILTLFLNCGLRVSE 175

Query: 209 SCRAGVQHLQNNIFSIKTQKTGTIITVELP----DGFMKLLAMTPIG----KETFFINND 260
                   + ++       K      V L     D + + + + PI     K+  FI+ +
Sbjct: 176 MAGLNYNDIHSDGTMRVVGKGNKERIVYLNSACIDAYNEYMKVRPIDEVKDKKALFISRN 235

Query: 261 KQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGA-TAHELMATYGWKTV 316
            ++M+             K G++    S H +R  +AT+    G      L    G + +
Sbjct: 236 HRRMSVKTIQAMVYKYLEKIGLDSQGYSCHKLRHTAATLMYQQGGVDVRVLKEVLGHENL 295

Query: 317 DQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
              E YT  +        +S  ++ +     
Sbjct: 296 GTTEIYTHLSSEQMKNAADSNPLAKIKPKKK 326


>gi|284007181|emb|CBA72467.1| phage integrase [Arsenophonus nasoniae]
          Length = 269

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 50/260 (19%), Positives = 98/260 (37%), Gaps = 14/260 (5%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSS 132
           +  Y +      L   +   ++     I ++  D     +TTK+I   +     K   ++
Sbjct: 1   MDRYEEILRARGLKEKTMKDYKHRISVIRKEMIDVPIESVTTKNIADLLHPFINKGKITT 60

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
           A      +   FK A+    + INP    + PK K +  R  +  D     +  ++ +  
Sbjct: 61  AKLMRVFLNDYFKEAISLGILKINPVTPTKIPKIKIQRAR-LSFNDFTAILNLINDENHW 119

Query: 193 RL-AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL----LAM 247
              + +  L +G R SD  +   +++ +N   I  QKT + I + L    + +    L  
Sbjct: 120 LTKSMKIALVTGQRISDISKLKWKNIYDNKLWIIQQKTESKIAIPLNIEIVNIKLSKLLE 179

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-----SAHGVRKFSATISADAGA 302
               +  + I N  +K++  + S  F     K+ +       S H +R  SA +  +   
Sbjct: 180 IKNERSEYIITNGDKKLSTDKISKTFAKFRDKSELKWEVNPPSFHEIRSLSARLYTETMG 239

Query: 303 TAHELMATYGWKTVDQAETY 322
           T        G K+++  E Y
Sbjct: 240 TDFA-KKLLGHKSIEMTEKY 258


>gi|160877191|ref|YP_001556507.1| tyrosine recombinase XerC [Shewanella baltica OS195]
 gi|160862713|gb|ABX51247.1| tyrosine recombinase XerC [Shewanella baltica OS195]
 gi|315269395|gb|ADT96248.1| tyrosine recombinase XerC [Shewanella baltica OS678]
          Length = 306

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 33/271 (12%), Positives = 89/271 (32%), Gaps = 21/271 (7%)

Query: 72  KWL--ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-FDYRKITTKHIR---SGVES 125
           +WL     Y  +     L+ ++  ++    ++      D      ++ +H +   + +  
Sbjct: 14  QWLQTFERYLSTER--QLSAHTVRNYLYELNRGSDLLPDGVHLLNVSREHWQQVLAKLHR 71

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +  +P S    L++++   ++ +R+  + +NP   +  PK+     +    + +      
Sbjct: 72  KGLSPRSLSLCLSAVKQWGEFLLRESVIELNPAKGLSAPKQAKPLPKNIDVDAISHLLDI 131

Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT--------IIT 234
                   + +   E    SGLR ++     +  +Q ++  ++    G          + 
Sbjct: 132 EGTDPLSLRDKAMMELFYSSGLRLAELAALNLSSVQYDLKEVRVLGKGNKERIVPVGRLA 191

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSAHGVRKF 292
           +     ++      P      F+    ++++                  V    H +R  
Sbjct: 192 IAALLNWLNCRKQIPCEDNALFVTEKGKRLSHRSIQARMAKWGQEQALSVRVHPHKLRHS 251

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYT 323
            AT   +A A    +    G   +   + YT
Sbjct: 252 FATHMLEASADLRAVQELLGHANLATTQIYT 282


>gi|187922354|ref|YP_001893996.1| site-specific tyrosine recombinase XerC [Burkholderia phytofirmans
           PsJN]
 gi|187713548|gb|ACD14772.1| tyrosine recombinase XerC [Burkholderia phytofirmans PsJN]
          Length = 307

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 44/279 (15%), Positives = 90/279 (32%), Gaps = 30/279 (10%)

Query: 75  ISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTP 130
           I+ Y  +  H   L+ ++   +    +++ + +       +T   IR  V        T 
Sbjct: 7   IAAYLSNLEHERRLSAHTLRGYAHELEELKQLAKGRPLESLTPVDIRGAVSRAHAGGLTA 66

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFW 186
            S    L++ R  ++W   +  +A NP  +V  PK+     +  + +D    M+   +  
Sbjct: 67  RSISHRLSAWRAFYRWLAGRVDLAANPVATVRAPKQAKPLPKALSVDDATRLMESPPAAS 126

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRA-------------GVQHLQNNIFSIKTQKTGTII 233
            EG +     E    SGLR ++                 G   L +    +  +     +
Sbjct: 127 PEGLRDHAMLELFYSSGLRLAELVGLDARFADADGYRSAGWLKLDSAEVEVLGKGNRRRV 186

Query: 234 TVELPDGFMKLLAMTPIGKET-------FFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284
                     L A   +  +         F++    +++        K  A  AG+    
Sbjct: 187 VPVGSKALEALGAWLAVRDQMVKHDPHPLFLSARGNRLSPNVVRERVKRAALVAGIPANV 246

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
             H +R   AT    +      +    G  ++   + YT
Sbjct: 247 HPHVLRHSFATHVLQSSGDLRAVQELLGHASITATQVYT 285


>gi|108798958|ref|YP_639155.1| site-specific tyrosine recombinase XerC [Mycobacterium sp. MCS]
 gi|119868073|ref|YP_938025.1| site-specific tyrosine recombinase XerC [Mycobacterium sp. KMS]
 gi|123070325|sp|Q1BAI5|XERC_MYCSS RecName: Full=Tyrosine recombinase xerC
 gi|166918890|sp|A1UEH7|XERC_MYCSK RecName: Full=Tyrosine recombinase xerC
 gi|108769377|gb|ABG08099.1| tyrosine recombinase XerC subunit [Mycobacterium sp. MCS]
 gi|119694162|gb|ABL91235.1| tyrosine recombinase XerC subunit [Mycobacterium sp. KMS]
          Length = 300

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 38/268 (14%), Positives = 91/268 (33%), Gaps = 28/268 (10%)

Query: 85  GSLAVNSRISFESYFDQII----RKSGDFDYRKITTKHIRSGVESRKHT---PSSAIQFL 137
              + ++R ++      +      ++   D   +T   +R+ + ++       ++  +  
Sbjct: 16  RGRSDHTRRAYLGDLRSLFAFCNERTPGADLGSLTLPVLRAWLSAQAAAGTARTTLARRT 75

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW--------SEG 189
           ++++    WAVR+  +A +P   ++ PK +        ++  +                 
Sbjct: 76  SAVKTFTAWAVRRGLMASDPATRLQMPKARRTLPAVLRQDQARDALDAANSGAQQGDPLA 135

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM- 247
            + RL  E L  +G+R S+ C   +  +  +   ++   K     TV   +   + L   
Sbjct: 136 LRDRLIVEMLYATGIRVSELCGLDIDDVDTSRRLLRVLGKGDKQRTVPFGEPAEQALRAW 195

Query: 248 ---------TPIGKETFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSAHGVRKFSATI 296
                    T        +    ++++  Q          A     +   HG+R  +AT 
Sbjct: 196 LTSGRPALATAESGPALLLGARGRRLDPRQARTVVHETVGAVAGAPDIGPHGLRHSAATH 255

Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324
             + GA    +    G  T+   + YT 
Sbjct: 256 LLEGGADLRIVQELLGHSTLATTQLYTH 283


>gi|88861277|ref|ZP_01135909.1| site-specific recombinase [Pseudoalteromonas tunicata D2]
 gi|88816758|gb|EAR26581.1| site-specific recombinase [Pseudoalteromonas tunicata D2]
          Length = 305

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 36/275 (13%), Positives = 94/275 (34%), Gaps = 22/275 (8%)

Query: 72  KWL--ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD-----YRKITTKHIRSGV 123
            WL  +  + +   +  + ++++ + +     ++     +        +    +     +
Sbjct: 10  SWLNPVEVFLQYLKYEKNYSIHTLLQYRLQLVEVANFLQNKAESWLKVQPEQLRAYSMSL 69

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
           ++R  +  +    L+ +R  +K+   ++    NP  +++ PK +    +    + M Q  
Sbjct: 70  KARALSARTINLKLSCVRSFYKYLQIRKTELNNPAEAIKGPKFQKPLPKNLDVDQMHQLL 129

Query: 184 SFWSE---GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV----- 235
           +   E   G + +   E +  SGLR S+   A +  +      I+    G    +     
Sbjct: 130 AMNPEDSFGFRDKAMMELMYSSGLRVSELVNANLIDVNLREKEIRVLGKGNKERILPIGG 189

Query: 236 ----ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289
                L D            +   F++  K +++  Q     K      G++     H +
Sbjct: 190 KAIEALQDWLKCRAEFALPDEVAVFVSKKKCRISTRQVRARMKLWGINQGISSQIHPHKL 249

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           R   A+   ++      +    G  ++   + YT 
Sbjct: 250 RHSFASHMLESSGDLRAVQELLGHSSLSATQVYTH 284


>gi|322435169|ref|YP_004217381.1| integrase family protein [Acidobacterium sp. MP5ACTX9]
 gi|321162896|gb|ADW68601.1| integrase family protein [Acidobacterium sp. MP5ACTX9]
          Length = 310

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 58/285 (20%), Positives = 96/285 (33%), Gaps = 27/285 (9%)

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
               L  L +E   S H           F +Y    + + G      +  +   S + +R
Sbjct: 8   ADGFLAMLRNERGASEHTVRAYTREVKDFAAYLAGEMGERGIGAVEHLHIRGYLSVLYAR 67

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF---K 183
               SS  + L S+R  FKW  ++  V  NP L V  PKR     R  + E++ +     
Sbjct: 68  GLEKSSMARALASVRSWFKWLAKEGKVEQNPALLVSTPKRAQHLPRVPSAEEVNRVMDSL 127

Query: 184 SFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPD 239
                G+   + R+ FE L   G+R S+ C   + ++Q  N   +   K      V L D
Sbjct: 128 ESADGGTWPERDRVIFELLYGCGIRNSELCGLDMGNVQWANDAVLVRGKGKKERLVPLGD 187

Query: 240 GFMKLLAM---------------TPIGKETFFINNDKQ---KMNATQFSIWFKAKATKAG 281
                +                   IG     +N   +   ++         KA A   G
Sbjct: 188 EAAAAVRAYMPQRAERLAAAGKGGLIGDGALLMNARMRGTCRLTTRSVGRIVKAIAQSRG 247

Query: 282 VNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +      H +R    T   + GA    +    G + +   + YT+
Sbjct: 248 LAADVHPHTLRHAFGTHMLEDGADLRAIQEMLGHERLSTTQRYTQ 292


>gi|1877429|gb|AAC48867.1| integrase [Streptococcus pyogenes phage T12]
          Length = 362

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 50/304 (16%), Positives = 95/304 (31%), Gaps = 31/304 (10%)

Query: 48  MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG 107
            +A       +  ++ P+    T   L  ++ K             +  +    I+ K  
Sbjct: 40  QAARETLISLQAELDKPKSS-MTFGALTDQWLKEYEKTVQGSTYLKTERNINKHILPKLD 98

Query: 108 DFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167
                 I    I+   E   +      + L  +R +   AVR  Y+  NP L +  PK K
Sbjct: 99  KVKIGDINPLLIQRLTEEWCNDLKYGGKILGLVRNILNLAVRYGYINNNPALPITPPKIK 158

Query: 168 TEG---IRPWTKEDMQQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222
            +       +T + ++QF     +         F  L ++G+R  +        L  N  
Sbjct: 159 RKRKMNNNFYTLDQLKQFLELVEKTDNIEKIALFRLLAFTGIRKGELLALTWDDLNGNTL 218

Query: 223 SIKTQKTGTIITVEL------------------PDGFMKLLAMTPIGKETFFINNDKQKM 264
           SI    T T + +E+                   +   +L    P     F  +     M
Sbjct: 219 SINKAVTRTQVGLEIDVTKTKSSDRLISLDDETLEILQELHETFPTSTLMF-QSKSGGIM 277

Query: 265 NATQFSIWFKAKATKAGVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE- 320
             +    W        G++    + HG R   A++  ++G +  ++    G   +     
Sbjct: 278 TPSLPRKWLLQIIK--GIDLPQITIHGFRHTHASLLFESGLSLKQVQHRLGHGDLQTTMN 335

Query: 321 TYTK 324
            YT 
Sbjct: 336 VYTH 339


>gi|763052|gb|AAA85500.1| integrase [Streptococcus phage T270]
          Length = 362

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 50/304 (16%), Positives = 95/304 (31%), Gaps = 31/304 (10%)

Query: 48  MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG 107
            +A       +  ++ P+    T   L  ++ K             +  +    I+ K  
Sbjct: 40  QAARETLISLQAELDKPKSS-MTFGALTDQWLKEYEKTVQGSTYLKTERNINKHILPKLD 98

Query: 108 DFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167
                 I    I+   E   +      + L  +R +   AVR  Y+  NP L +  PK K
Sbjct: 99  KVKIGDINPLLIQRLTEEWCNDLKYGGKILGLVRNILNLAVRYGYINNNPALPITPPKIK 158

Query: 168 TEG---IRPWTKEDMQQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222
            +       +T + ++QF     +         F  L ++G+R  +        L  N  
Sbjct: 159 RKRKMNNNFYTLDQLKQFLELVEKTDNIEKIALFRLLAFTGIRKGELLALTWDDLNGNTL 218

Query: 223 SIKTQKTGTIITVEL------------------PDGFMKLLAMTPIGKETFFINNDKQKM 264
           SI    T T + +E+                   +   +L    P     F  +     M
Sbjct: 219 SINKAVTRTQVGLEIDVTKTKSSDRLISLDDETLEILQELHETFPTSTLMF-QSKSGGIM 277

Query: 265 NATQFSIWFKAKATKAGVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE- 320
             +    W        G++    + HG R   A++  ++G +  ++    G   +     
Sbjct: 278 TPSLPRKWLLQIIK--GIDLPQITIHGFRHTHASLLFESGLSLKQVQHRLGHGDLQTTMN 335

Query: 321 TYTK 324
            YT 
Sbjct: 336 VYTH 339


>gi|269965093|ref|ZP_06179258.1| tyrosine recombinase XerC [Vibrio alginolyticus 40B]
 gi|269830396|gb|EEZ84621.1| tyrosine recombinase XerC [Vibrio alginolyticus 40B]
          Length = 229

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 31/204 (15%), Positives = 69/204 (33%), Gaps = 14/204 (6%)

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WSEGSQ 191
             L+S+R  F + + +  ++ NP   V  P++K    +    +++ Q            +
Sbjct: 3   TRLSSLRSFFDFLILRGEMSANPAKGVSAPRKKRPLPKNLDVDEVSQLLEVNEDDPLAVR 62

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE--------LPDGFM 242
            R   E +  +GLR ++     V+ +Q     ++   K      V         +     
Sbjct: 63  DRAMMELMYGAGLRLAELVGVDVRDVQLRSGELRVIGKGDKERKVPFSGMATEWVGKWLR 122

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADA 300
               +   G+   F++    +++             K  V  + S H +R   AT   ++
Sbjct: 123 VRGDLAAPGEPALFVSKLGTRISHRSVQKRMAEWGQKQSVASHISPHKLRHSFATHMLES 182

Query: 301 GATAHELMATYGWKTVDQAETYTK 324
                 +    G + +   + YT 
Sbjct: 183 SNNLRAVQELLGHENISTTQIYTH 206


>gi|260892725|ref|YP_003238822.1| integrase family protein [Ammonifex degensii KC4]
 gi|260864866|gb|ACX51972.1| integrase family protein [Ammonifex degensii KC4]
          Length = 378

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 43/327 (13%), Positives = 107/327 (32%), Gaps = 39/327 (11%)

Query: 48  MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG 107
           ++ L     + E   +PR    T+  L+  + + +        + ++ E+         G
Sbjct: 46  LAELLAKAGRGELGTAPRSL--TVAALLDMWLEVSR-RRWKPGTAVAAETAVKTWKELLG 102

Query: 108 DFDYRKITTKHIRSGVESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165
                K+    +   +   +   +P++       +R   +WAV+++ +  +P   V  P+
Sbjct: 103 HVPAGKLGPADVEKALARMEGELSPATCRYRFGLLRQAMRWAVKRKLLGQDPTEGVAPPR 162

Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQ---PRLAFEFLLYSGLRCSDSCRAGVQHLQ--NN 220
              + +R W++E++ +F             +  F   L +G+R  +      + +     
Sbjct: 163 APRKEVRVWSEEEIARFLGVLDSSGHRPAVKAFFRLALSTGMRKGELLALRWEDVDFEKG 222

Query: 221 IFSIKTQK----------------TGTIITVELPDGFMKLLAMTPIGKE----------T 254
              ++  +                    +     +   +L       K            
Sbjct: 223 CLYVRRTRCHHTGGVHEPKSPSSCRKVALDAGSLECLRRLKREQAREKLRAGAEWCEQGL 282

Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGW 313
            F     + ++  + +  F++   +AGV +   H +R   A++    G     +    G 
Sbjct: 283 VFATRKGKALSVFRLACTFRSLCRRAGVPEIRIHDLRHTHASLLLRQGVHPKVVQERLGH 342

Query: 314 KTVDQA-ETYTKGA-DRIRLGIKNSRR 338
            +V    +TY+    D     +K   R
Sbjct: 343 SSVKITLDTYSHLLPDAQEQAVKALER 369


>gi|134298247|ref|YP_001111743.1| phage integrase family protein [Desulfotomaculum reducens MI-1]
 gi|134050947|gb|ABO48918.1| phage integrase family protein [Desulfotomaculum reducens MI-1]
          Length = 304

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 45/280 (16%), Positives = 90/280 (32%), Gaps = 29/280 (10%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVES------ 125
           L+  +       +L+  +   ++   +++I   K  +     +TT   R  V S      
Sbjct: 6   LVKTFLMYQETKNLSKRTIEWYQFTLNKLIDYCKENNISIESMTTPQARQYVFSLQKSIS 65

Query: 126 ---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ-- 180
              +K+  +    ++ S++++F +    EY+  NP   V++ K     I  +  E+++  
Sbjct: 66  RTGKKYADNGINGYIRSVKIMFNYLFEDEYIEKNPFAKVKQIKTDKVIIETFEVEEVKRM 125

Query: 181 --QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVEL 237
             QF        +  L  + L  +G+R S++    +  +  +    K   K      V  
Sbjct: 126 LNQFNKKVYTEFRDALLIQILYDTGIRISEAINLKISDIDTDKNMFKVFGKGHKERMVPF 185

Query: 238 PDGF-MKLLAMTPI---------GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--- 284
                 ++L   P           +   F   +   +             TKA +     
Sbjct: 186 GRSIKREILKYLPKRNKEVDKELDEGYLFSTRNGTALTIRNVHRKIVEVGTKAKIKGKRL 245

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           SAH  R   A      G     L    G   +     Y  
Sbjct: 246 SAHTFRHTFAKTYLVNGGNLFSLQTIMGHNDLSTTRKYVH 285


>gi|38257059|ref|NP_940713.1| Orf28 [Pseudomonas syringae pv. syringae]
 gi|37723836|gb|AAR02162.1| Orf28 [Pseudomonas syringae pv. syringae]
          Length = 319

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 50/276 (18%), Positives = 101/276 (36%), Gaps = 31/276 (11%)

Query: 84  WGSLA-VNSRISFESYFDQIIRKSGDF---DYRKITTKHI---RSGVESRKHTPSSAIQF 136
           + +L    +R ++++         G     D+R++T  H+   R+ +E R    ++  + 
Sbjct: 33  FANLDNPRTRRAYQNDLTDFSSFIGLASADDFRQVTRSHVLAWRADLEQRGLAGATIRRK 92

Query: 137 LTSMRVLFKWAVRQE-YVAINPCLSVERPKRKT-EGIRPWTKED-----MQQFKSFWSEG 189
           L ++  LF   +        NP   V+RP+ ++ EG  P   +      +    +   +G
Sbjct: 93  LAALASLFDHLLENNAVAGGNPVHGVKRPRIESNEGKTPALGDHQAKQLLDAPDTETLKG 152

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTII-TVELPDGFMKLL- 245
            + R     LLY GLR  ++ +     L  +  I  ++    G+ I  + L     + + 
Sbjct: 153 LRDRAILAVLLYHGLRREEAAQLKTGDLQERRGIKHLRVHGKGSKIRFLPLHPVAAERIY 212

Query: 246 ---------AMTPIGKETFFI-NNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKF 292
                       P               ++A       +A A KAG+   +   HG+R  
Sbjct: 213 AYLEQDVERDAAPGPLFRSLRGTTTGAGISANGIYTVVEACAKKAGIVVEHLGVHGLRAT 272

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           +AT + +  A   ++    G   +     Y +   R
Sbjct: 273 AATNALEHDADIAKVQMWLGHANISTTRLYDRRGQR 308


>gi|60681230|ref|YP_211374.1| putative tyrosine recombinase [Bacteroides fragilis NCTC 9343]
 gi|60492664|emb|CAH07437.1| putative tyrosine recombinase [Bacteroides fragilis NCTC 9343]
          Length = 294

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 50/283 (17%), Positives = 98/283 (34%), Gaps = 23/283 (8%)

Query: 56  PKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT 115
           PK+    SP   P         Y ++      + ++  ++ +YF +  +     + R I 
Sbjct: 2   PKKNGKTSPAIPPG--------YAETLRQLRYSEHTVRAYTAYFREFQQYFAGRNLRYIR 53

Query: 116 TKHIRSGV----ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
            + I + +    ++R  +       + S++  F+  + QE      C  V+R KR+    
Sbjct: 54  PEEINAYIVHLIDTRGISSCQQNLRINSIKFYFEKVLGQERK----CYEVKRAKRERTLP 109

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKT 229
              +KE+++          +    F  L  +GLR S+        +    ++  ++  K 
Sbjct: 110 DVLSKEEIKSILDATGPDIRLFCMFSLLYSAGLRISELLDLKPHDINVSRSLIRVRQGKG 169

Query: 230 GTIITVELPDGFMKLLAMTPI---GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS- 285
                  L    ++ L         +E  F     +    +  S   K  A +AG+ K  
Sbjct: 170 RKDRYTLLSKPLVRKLTEYTKLYKPQEWLFERYKGEPFTESIVSKKLKEAAKEAGITKRV 229

Query: 286 -AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
             H +R   AT   + G     +    G   +   E Y   AD
Sbjct: 230 YPHLLRHSFATHLIEQGTDLKIVKELLGHNQLKTTEMYVHIAD 272


>gi|255325242|ref|ZP_05366348.1| tyrosine recombinase XerC [Corynebacterium tuberculostearicum
           SK141]
 gi|255297807|gb|EET77118.1| tyrosine recombinase XerC [Corynebacterium tuberculostearicum
           SK141]
          Length = 305

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 38/264 (14%), Positives = 84/264 (31%), Gaps = 21/264 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE---SRKHTPSSAIQFLTSMR 141
              A  +   + S    + R      + +     +R  +    +   + S+  +   + +
Sbjct: 32  KGRAEATVRGYRSDLRDLARSVPT--FAEFDLNSLRQWLAEAVAEGKSRSTLARRTAAAK 89

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM-----QQFKSFWSEGSQPRLAF 196
               WAVR+ ++  +    +  PK           E           +      +     
Sbjct: 90  GFSTWAVREGHLKRDVAARLVTPKVGRHLPTVLAPEQAGELMGNAVSADEVHFLRDSAIL 149

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-----ELPDGFMKLLA----- 246
           E L  SG+R ++  R  +  +     ++     G    V        D   + +      
Sbjct: 150 ELLYASGMRVAELVRLDLGDIDFQRGTLHVTGKGNKQRVVPFGHAAEDALKQWIDKGRGE 209

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAH 305
           +   G E  F+ +   +++  Q     +  A   G    + HGVR  +AT   + GA   
Sbjct: 210 IAAAGTEAVFVGSRGGRIDQRQVRRIVEKAAKVTGTQGLTPHGVRHSAATHLLEGGADLR 269

Query: 306 ELMATYGWKTVDQAETYTKGADRI 329
            +    G  +++  + YT  + + 
Sbjct: 270 VVQELLGHSSLNTTQIYTHVSAQR 293


>gi|307691932|ref|ZP_07634169.1| Phage integrase [Ruminococcaceae bacterium D16]
          Length = 540

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 43/291 (14%), Positives = 95/291 (32%), Gaps = 38/291 (13%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFES-YFDQIIRKSGDFDYRKITTKHIRSGVESRKH- 128
               +  + ++     L   ++ ++ES  +  II + G     ++T K ++      K  
Sbjct: 72  FGEWMDFWYQTYIKSGLRPATQNTYESTIYQHIIPQLGKIPLCQLTQKDLQQFYAHLKKE 131

Query: 129 -------------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
                        +   A       R     AV++  +  NP +  + P +++  ++  +
Sbjct: 132 GRLVRTEQYGKGLSDRMARMCHAKCRAALDQAVQENLIRSNPAVGCKLPPKRSREMQVLS 191

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK------T 229
           ++++Q+F           L F   L +GLR  +        L  +  ++   K       
Sbjct: 192 RQELQRFLIQAKADGYFEL-FLLDLSTGLRRGELLALQWSDLDLDTGTLSVTKQVYEVNG 250

Query: 230 GTIITVE----------LPDGFMKLLAM-TPIGKETFFINNDKQ---KMNATQFSIWFKA 275
              ++V           LP   +++        K  +   + K     +           
Sbjct: 251 KMQLSVPKTKASIRKLVLPPAVVEVFREYRKTAKSRWLFPSPKNLDMPLTPGSMLRRLHI 310

Query: 276 KATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
              +AG  +   H +R   AT++ + G     L A  G  +     + YT 
Sbjct: 311 ILERAGCKQIRFHDLRHTFATMALENGMDIKTLSAMLGHVSAATTLDIYTH 361


>gi|261495471|ref|ZP_05991918.1| putative integrase/recombinase [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261308805|gb|EEY10061.1| putative integrase/recombinase [Mannheimia haemolytica serotype A2
           str. OVINE]
          Length = 351

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 59/339 (17%), Positives = 109/339 (32%), Gaps = 32/339 (9%)

Query: 3   PSLRLPPFVTKERTRHGKIIYY--FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60
           P    P  VT++    GK + Y  +R      I L       FI A          +   
Sbjct: 13  PENLRPKTVTRKS---GKTVIYWLYRTHGKTEISLGTNRNEAFIKA---------AQLNI 60

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
               +    T   +   YR        A  ++         ++    D    +IT +HIR
Sbjct: 61  ERESQTARITFGLVAKRYRDEVIPQKKASTAQTDLCK-IKNLLLFFNDAPLEEITPQHIR 119

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
             +  RK TP SA    +    ++++A    Y  + P  ++   +        + + ++ 
Sbjct: 120 EYMTWRKDTPGSANNEFSMFSHIWQYAREWGYTNL-PSPNIGMKRYPIRKREIYVENNI- 177

Query: 181 QFKSFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239
            F+  +    Q  R   +    +G R  D      +H+ +    I  QKT   + +E+  
Sbjct: 178 -FQMVYEVADQDMRDLMDLAYITGQRPVDLVNIRKEHIFDGYLHIVQQKTQAKLRIEIVG 236

Query: 240 GFMKLL--AMTPIGKETFFINNDKQKMNATQFSIWF---KAKATKAGVNK-------SAH 287
               ++   +        F     +K+ A +    F   + +A K               
Sbjct: 237 KLADIIQDRLEKATGTHLFSTKKGEKLTARKLGKRFTYIREQAVKNNPEYANEIMAFQFR 296

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            +R  S T  A +           G  +V   +TY + A
Sbjct: 297 DLRAKSGTDKALSLGEEAARQ-QLGHTSVQMTKTYIRKA 334


>gi|257874138|ref|ZP_05653791.1| site-specific recombinase [Enterococcus casseliflavus EC10]
 gi|257808302|gb|EEV37124.1| site-specific recombinase [Enterococcus casseliflavus EC10]
          Length = 299

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 44/281 (15%), Positives = 102/281 (36%), Gaps = 36/281 (12%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIR---SGVE 124
            ++LI E          +  ++ +++   +     +++SG+ D   +  + +R   S + 
Sbjct: 11  FRYLIVE-------RGYSEKTKKAYQEDMNDFFHFLKESGNEDPLAVEYRDVRVYLSYLT 63

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
            R ++ +S  + + S+R  +++  + E V  NP   +   K+  +  R + +++M     
Sbjct: 64  ERGYSRNSISRKMASLRSFYQFLTKHEIVKENPFAYIHLKKKNAKLPRFFYEKEMDALFQ 123

Query: 185 F----WSEGSQPRLAFEFLLYSGLRCSDS--CRAGVQHLQNNIFSIKTQKTGTI------ 232
                     + +   E L  SGLR S+      G    ++ +  I  +           
Sbjct: 124 SVAGDEPLQQRNQALLEVLYGSGLRVSECSSLTLGAIDWESGVLLIHGKGNKDRYVPFGS 183

Query: 233 -----ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ----FSIWFKAKATKAGVN 283
                +   L  G  +L+       E  F+N+    + AT      +   +  +  + ++
Sbjct: 184 YAQAAVKRYLSSGRKQLMEKQNKEHEVLFVNHLGDGITATGIEYVLNQIIRKSSLDSKIH 243

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              H +R   AT   + GA    +    G   +   + Y  
Sbjct: 244 --PHMLRHTFATHLLNNGADMRTVQELLGHANLSTTQIYAH 282


>gi|225874533|ref|YP_002755992.1| putative tyrosine recombinase XerC [Acidobacterium capsulatum ATCC
           51196]
 gi|225793160|gb|ACO33250.1| putative tyrosine recombinase XerC [Acidobacterium capsulatum ATCC
           51196]
          Length = 310

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 53/279 (18%), Positives = 96/279 (34%), Gaps = 27/279 (9%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES---RK 127
           L  L +E   S H           F +Y ++++ K  D   + +   HIR+ +     R 
Sbjct: 16  LAALRNERGSSPHTLRAYTRELRDFAAYAERLLGK--DVGVKAMEHTHIRAYLGELYERG 73

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----- 182
            + +SA + L ++R   KW  R   +  +P   V  PK      R  T EDM +      
Sbjct: 74  LSKASAARALAAIRSWCKWLARHGELEQSPAALVATPKLPKHLPRVPTIEDMNRLVDASS 133

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGF 241
           +   +  ++ RL  E L   G+R ++     ++ +Q  N   +   K      V + D  
Sbjct: 134 EEVAAWPARDRLILELLYGCGIRNAELVGINLEDIQWTNEAILVRGKGRKERYVPIGDAA 193

Query: 242 MKLLAM-----------TPIGKETFFINND---KQKMNATQFSIWFKAKATKAGVNKS-- 285
            + L                      +N     + ++         K  A   G+     
Sbjct: 194 AQALRAYLPERNQKLATAGKDSAALLLNARLRGQGRLTTRSVGRIVKQMALAQGLPADVH 253

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            H +R    T   + GA    +    G + +   + YT+
Sbjct: 254 PHTLRHAFGTHLLEEGADLRAIQELLGHERLSTTQRYTQ 292


>gi|254361499|ref|ZP_04977638.1| possible integrase/recombinase [Mannheimia haemolytica PHL213]
 gi|153093013|gb|EDN74034.1| possible integrase/recombinase [Mannheimia haemolytica PHL213]
          Length = 351

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 59/339 (17%), Positives = 109/339 (32%), Gaps = 32/339 (9%)

Query: 3   PSLRLPPFVTKERTRHGKIIYY--FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60
           P    P  VT++    GK + Y  +R      I L       FI A          +   
Sbjct: 13  PENLRPKTVTRKS---GKTVIYWLYRTHGKTEISLGTNRNEAFIKA---------AQLNI 60

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
               +    T   +   YR        A  ++         ++    D    +IT +HIR
Sbjct: 61  ERESQTARITFGLVAKRYRDEVIPQKKASTAQTDLCK-IKNLLLFFNDAPLEEITPQHIR 119

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
             +  RK TP SA    +    ++++A    Y  + P  ++   +        + + ++ 
Sbjct: 120 EYMIWRKDTPGSANNEFSMFSHIWQYAREWGYTNL-PSPNIGMKRYPIRKREIYVENNI- 177

Query: 181 QFKSFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239
            F+  +    Q  R   +    +G R  D      +H+ +    I  QKT   + +E+  
Sbjct: 178 -FQMVYEVADQDMRDLMDLAYITGQRPVDLVNIRKEHIFDGYLHIVQQKTQAKLRIEIVG 236

Query: 240 GFMKLL--AMTPIGKETFFINNDKQKMNATQFSIWF---KAKATKAGVNK-------SAH 287
               ++   +        F     +K+ A +    F   + +A K               
Sbjct: 237 KLADIIQDRLEKATGTHLFSTKKGEKLTARKLGKRFTYIREQAVKNNPEYANEIMAFQFR 296

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            +R  S T  A +           G  +V   +TY + A
Sbjct: 297 DLRAKSGTDKALSLGEEAARQ-QLGHTSVQMTKTYIRKA 334


>gi|16082303|ref|NP_394769.1| site-specific integrase/recombinase XerD related protein
           [Thermoplasma acidophilum DSM 1728]
 gi|10640657|emb|CAC12435.1| site-specific integrase/recombinase XerD related protein
           [Thermoplasma acidophilum]
          Length = 283

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 38/250 (15%), Positives = 88/250 (35%), Gaps = 18/250 (7%)

Query: 91  SRISFESYFDQIIRKSGDFD--YRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAV 148
           +   +    DQ +            +  +  ++ +  +K    ++         LF  A+
Sbjct: 25  TIKEYRFLVDQFLSFMNKKPDEITPMDIERYKNFLAVKKRYSKTSQYLAIKAVKLFYKAL 84

Query: 149 RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD 208
               V IN    +  PKR +      ++++ ++     S  ++       L Y+G+R  +
Sbjct: 85  DLR-VPIN----LTPPKRPSHMPVYLSEDEAKRLIEAASSDTRMYAIVSVLAYTGVRVGE 139

Query: 209 SCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDG-------FMKLLAMTPIGKETFFINN 259
            C   +  +    +I ++++ K      V + +        ++ L        +  F++N
Sbjct: 140 LCNLKISDVDLQESIINVRSGKGDKDRIVIMAEECVKALGSYLDLRLSMDTDNDYLFVSN 199

Query: 260 DKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVD 317
            + + + +      +    KAG+ K  + H +R   AT     G     +    G  +V 
Sbjct: 200 RRVRFDTSTIERMIRDLGKKAGIQKKVTPHVLRHTFATSVLRNGGDIRFIQQILGHASVA 259

Query: 318 QAETYTKGAD 327
             + YT   D
Sbjct: 260 TTQIYTHLND 269


>gi|315152400|gb|EFT96416.1| tyrosine recombinase XerC [Enterococcus faecalis TX0031]
          Length = 299

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 39/265 (14%), Positives = 94/265 (35%), Gaps = 25/265 (9%)

Query: 85  GSLAVNSRISFE---SYFDQIIRKSGDFDY---RKITTKHIRSGVESRKHTPSSAIQFLT 138
              +  ++ +++    +F   ++ SG+ +Y     +  +   S +  ++++ +S  + + 
Sbjct: 18  RGYSEKTKKAYQEDIQHFFSFLKTSGNDNYLTVEHLDVRAYLSELYDQEYSRNSISRKIA 77

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRL 194
           S+R  +++ ++ E +  NP   V   K++    R + +++M               + + 
Sbjct: 78  SLRSFYQFLLKNEAIQENPFSYVHMKKKQLRLPRFFYEKEMDALFESAQGEQPLDLRNQA 137

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-ITVE------------LPDGF 241
             E L  +G+R S+     V  +      +     G     V             L +G 
Sbjct: 138 LLEVLYGTGIRVSECANLTVDAVDFQASVLLVHGKGNKDRYVPFGSFAQDALKDYLENGR 197

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
             L+          F+N+  +++  T           K+ +N     H +R   AT   +
Sbjct: 198 ALLMTKYQKKHPYVFVNHHGEQITPTGIEYVLNQLIKKSSLNVEIHPHMLRHTFATHLLN 257

Query: 300 AGATAHELMATYGWKTVDQAETYTK 324
            GA    +    G   +   + Y  
Sbjct: 258 NGADMRTVQELLGHANLSTTQIYAH 282


>gi|220921142|ref|YP_002496443.1| tyrosine recombinase XerD [Methylobacterium nodulans ORS 2060]
 gi|219945748|gb|ACL56140.1| tyrosine recombinase XerD [Methylobacterium nodulans ORS 2060]
          Length = 308

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 45/272 (16%), Positives = 85/272 (31%), Gaps = 27/272 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKS-----GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
              + N+  ++    D  +                  +   + +++R    SSA + L+ 
Sbjct: 23  RGASANTLAAYRRDLDDYLAHLAAEGLDPAAVEAPMIRAYMADLDARGLKASSAARRLSC 82

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG---------- 189
           +R   ++   + Y   +P   V  PKR     +  +  ++ +  S   E           
Sbjct: 83  IRGFHRFLYAEGYAPTDPTAPVSGPKRGRALPKVLSVAEVDRLLSVAKEAVAQAPNLSEA 142

Query: 190 ---SQPRLAFEFLLYSGLRCSDSCRAGVQH-LQNNIFSIKTQKTGTIITVELPDGFM--- 242
               +     E L  +GLR S+         L    + +   K G    V L +      
Sbjct: 143 ARAQRLLCLLELLYATGLRVSELVALPRAAALTRERYLVVRGKGGRERLVPLTEAARAAM 202

Query: 243 --KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATIS 297
              L  +   G   F  +++   +    F+   K  A  AG+     S H +R   A+  
Sbjct: 203 AAHLTMLAAPGPWLFPADSESGHLTRQAFARDLKLAAAAAGIRADRVSPHVLRHAFASHL 262

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              GA    +    G   +   + YT   D  
Sbjct: 263 LQNGADLRVVQELLGHADISTTQIYTHVLDER 294


>gi|326794173|ref|YP_004311993.1| integrase family protein [Marinomonas mediterranea MMB-1]
 gi|326544937|gb|ADZ90157.1| integrase family protein [Marinomonas mediterranea MMB-1]
          Length = 323

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 51/302 (16%), Positives = 107/302 (35%), Gaps = 44/302 (14%)

Query: 70  TLKWLISEYRK-SAHWGSLAVNSRISFESYFDQIIRKSG-DFDYRKITTKHIRSGVESRK 127
           ++  + S Y +       L+ ++  ++     Q +  +G       I  K +    +   
Sbjct: 3   SISRIASRYLQFCQKNRKLSGHTLKAYRIDLKQFVECTGVKTSVNAIDKKDLHKFHDYLA 62

Query: 128 HT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLS----VERPKRK------------- 167
            +    SS  + L  +R +F+W  ++E + + P       ++ PKR              
Sbjct: 63  DSELSQSSIKRKLACIRAMFRWLEQEEEIEVTPFHKFNTSIKLPKRLPRNVNKSDLKRML 122

Query: 168 TEGIRPWTKEDMQQF---KSFWSEGSQPR--------LAFEFLLYSGLRCSDSCRAGVQH 216
           T+G R   ++ ++      + +S  +  R        LA E +L +G+R S+     +  
Sbjct: 123 TQGRRTLDQKPLKSISDENTGFSYPTSKRDLNKLTGTLALELMLSTGMRVSELVGIQLDD 182

Query: 217 LQNNIFSIKTQKTGTI-ITVELPDG--------FMKLLAMTPIGKETFFINNDKQKMNAT 267
           +      IK    G+    V LPD         + K   +       F +N+  Q  +  
Sbjct: 183 IFLTERKIKIFGKGSRERYVYLPDKEICQLIRHYRKARTIVESDSSNFLLNSRGQPASTQ 242

Query: 268 QFSIWFKAKATK--AGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
                 +  A +    ++ + H +R  +A    ++G     +    G  ++   E YT  
Sbjct: 243 FIRKLIRLLAEQSSTQLHVTPHMLRHSAACELMESGLDIRFVQRLLGHSSISTTEIYTHV 302

Query: 326 AD 327
            D
Sbjct: 303 TD 304


>gi|312876873|ref|ZP_07736850.1| integrase family protein [Caldicellulosiruptor lactoaceticus 6A]
 gi|311796388|gb|EFR12740.1| integrase family protein [Caldicellulosiruptor lactoaceticus 6A]
          Length = 319

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 28/276 (10%), Positives = 77/276 (27%), Gaps = 22/276 (7%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
            +  +  +         +  +   +E +     ++  D        +       S+   P
Sbjct: 14  WEDALQLFLSYKKAQGRSDLTIRDYEIHIRAFFKRYPDCFNDTQKLRKCLIEYLSQPMKP 73

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS--- 187
            +    + +++    W V +  +  NP    +  K     +      D++  +       
Sbjct: 74  VTYNLRMKNLKAFLSWCVEEGIIPTNPIAKFKPRKTDDRIVEI----DIETLQKLLQLPD 129

Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIITVELPD 239
                G +        L +G+R  ++      H       +       KT     + +  
Sbjct: 130 RKTFAGLRDYALMLLTLDTGIRPKEAFSLLKDHFDFKNMQVVIPSDVAKTRVSRVLPISP 189

Query: 240 GFMKLLAMTPIGKET-------FFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKF 292
                +      +          F +   + +N  +++   +  + + GV    + +R  
Sbjct: 190 VTANAIKKLISSRHPQWDDSVPVFCSVTGKPLNRYRWNERMREYSKQLGVKIKPYDLRHM 249

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
            A +    G     L    G  T++  + Y     +
Sbjct: 250 FALLYLKNGGYELSLQKIMGHTTLEMTKKYVHFTQQ 285


>gi|312792344|ref|YP_004025267.1| integrase family protein [Caldicellulosiruptor kristjanssonii
           177R1B]
 gi|312179484|gb|ADQ39654.1| integrase family protein [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 398

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 53/310 (17%), Positives = 101/310 (32%), Gaps = 46/310 (14%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR--- 126
           LK  ++ +       +L  ++   +ES  +  I+   G +  + +  +H+++   S+   
Sbjct: 74  LKDWLNTWLWEYKKQTLRPSTFQDYESLINNHIVPAIGHYKLKDLRPEHLQALYNSKYGN 133

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE-GIRPWTKEDMQQFKSF 185
             + S+       +      A++   V  N   +   PK KT+  IR  T ++ Q+F + 
Sbjct: 134 GLSLSTIKHIHVILHSALDQALKNGLVVRNVSEATTLPKTKTKNEIRVLTLQEQQRFIAA 193

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQ---------------- 227
             EG + R AF   L SG+R  +         +L+    +IK                  
Sbjct: 194 L-EGERLRPAFLLALASGVRLGELLALKWDCVNLKEGTITIKRSLRRIKTYDKNLPTKTM 252

Query: 228 ------KTGTII-TVELPD------------GFMKLLAMTPI--GKETFFINNDKQKMNA 266
                 KT   I T+ +P                + L    +       F       +  
Sbjct: 253 LAFQEPKTAAGIRTIPVPPVILEELKEHRKRQLEERLQAGSLYEDNNLVFATELGTPIEP 312

Query: 267 TQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKG 325
             F   F     KA ++ + H +R   AT   +A      +    G   +      Y+  
Sbjct: 313 RNFLRVFYRIIEKANLDINFHALRHTYATRLLEANEHPKVVQELLGHNDISTTLNIYSHV 372

Query: 326 ADRIRLGIKN 335
              I+     
Sbjct: 373 MPEIKKAAAM 382


>gi|293371016|ref|ZP_06617558.1| integron integrase [Bacteroides ovatus SD CMC 3f]
 gi|292633946|gb|EFF52493.1| integron integrase [Bacteroides ovatus SD CMC 3f]
          Length = 368

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 39/297 (13%), Positives = 94/297 (31%), Gaps = 22/297 (7%)

Query: 41  STFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD 100
             F   Y         +    +   K+  TL      Y +       + ++  ++ +YF 
Sbjct: 62  PDFYDRYSPHAYIDYSRVYVRHPKPKREYTLP---KGYLELLEQKRYSPSTVKTYRAYFS 118

Query: 101 QIIRKSGDFDYRKITTKHIRSGV----ESRKHTPSSAIQFLTSMRVLFKWAV--RQEYVA 154
             +      +  ++    I   +      +K + S     + +++  ++     +++Y  
Sbjct: 119 DFMEYHKGRNIDRLKVPDINKYILYLVNEKKISVSQQNMRINAIKFYYEQVKGGKRQYYG 178

Query: 155 INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGV 214
                 + R K         +K ++++  +  S   +       +  +GLR S+      
Sbjct: 179 -----GITRAKEYKSLPEVLSKNEIKRILAQIS-NIKHHCMISLVYSAGLRRSELLNLTP 232

Query: 215 QHLQNNIFSIKTQKTGTI-----ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF 269
           Q + +   S++    G       ++ +L +            K  F      ++ +A+  
Sbjct: 233 QDINSETMSVRIMGKGKKCRYSLLSPKLLEELRHYFREYRPQKWLFEGETPGEQYSASAL 292

Query: 270 SIWFKAKATKAGVNKSAHG--VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
               K  A +AG+    H   +R   AT   + G   H +    G   +     Y  
Sbjct: 293 VKVLKEAAHRAGIKHRVHVHMLRHSFATHLLEQGTDLHTIQELLGHNDIKTTTIYLH 349


>gi|307728182|ref|YP_003905406.1| tyrosine recombinase XerC [Burkholderia sp. CCGE1003]
 gi|307582717|gb|ADN56115.1| tyrosine recombinase XerC [Burkholderia sp. CCGE1003]
          Length = 307

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 47/291 (16%), Positives = 92/291 (31%), Gaps = 33/291 (11%)

Query: 73  WLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KH 128
             I+ Y  +  H   L+ ++   +    D++   +     + +T   IR  V        
Sbjct: 5   DFIAAYLSNLEHERRLSAHTLRGYTHELDELRLLAKGRPLQSLTAVDIRGAVARAHAGGL 64

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS- 187
           T  S    L++ R  ++W   +  +  NP  +V  PK+     +  + +D  +       
Sbjct: 65  TARSISHRLSAWRAFYRWLAGRIDLPANPVATVRAPKQPKTLPKALSVDDANRLMETPPA 124

Query: 188 ---EGSQPRLAFEFLLYSGLRCSDSCRA-------------GVQHLQNNIFSIKTQKTGT 231
              EG +     E    SGLR ++                 G   L +    +   K   
Sbjct: 125 ASAEGLRDHAMLELFYSSGLRLAELVGLDVRFADADGYRSAGWLKLDSAEVEV-LGKGNR 183

Query: 232 IITVELPDGFMKLLAMTPIGKE--------TFFINNDKQKMNATQFSIWFKAKATKAGVN 283
              V +    ++ L      ++          F++    +++        K  A  AG+ 
Sbjct: 184 RRIVPVGSKALEALNAWLAVRDQMVRLDPHPLFLSARGNRLSPNVVRERVKRAALVAGIP 243

Query: 284 K--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
                H +R   AT    +      +    G  ++   + YT G D   L 
Sbjct: 244 ANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASITATQVYT-GLDFQHLA 293


>gi|325271628|ref|ZP_08138130.1| site-specific tyrosine recombinase XerC [Pseudomonas sp. TJI-51]
 gi|324103232|gb|EGC00577.1| site-specific tyrosine recombinase XerC [Pseudomonas sp. TJI-51]
          Length = 299

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 39/259 (15%), Positives = 91/259 (35%), Gaps = 19/259 (7%)

Query: 85  GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLT 138
             ++ ++ + +    D++    ++ G  D++ +  + +R  V    H      S  + L+
Sbjct: 16  RQVSEHTLLGYRRDLDKVIAYCKEQGIADWQALQIQQLRQLVARLHHHGQASRSLARLLS 75

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW-TKEDMQQFKSFWS---EGSQPRL 194
           ++R L+++  R+     +P   +  PK + +  +   T   +Q             + + 
Sbjct: 76  AVRGLYRYLNREGLCQHDPAAGLSAPKGERKLPKVLDTDRALQLLDGGVDDDFIARRDQA 135

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVEL----PDGFMKLLAMTP 249
             E    SGLR S+     + HL      ++   K G    + +     +   +   +  
Sbjct: 136 MLELFYSSGLRLSELSNLDLDHLDLAAGLVQVLGKGGKARVLPVGRKAREALKEWYRLRG 195

Query: 250 IG---KETFFINNDKQKMNATQFSIWFKAK-ATKAGVNKSAHGVRKFSATISADAGATAH 305
           IG       FI     +++        KA    + G +   H +R   A+   ++     
Sbjct: 196 IGNPRDRAVFITRQGNRISPRTVQQRVKAVGERELGQHLHPHMLRHSFASHVLESSQDLR 255

Query: 306 ELMATYGWKTVDQAETYTK 324
            +    G   +   + YT 
Sbjct: 256 AVQEMLGHADISTTQIYTH 274


>gi|314948558|ref|ZP_07851938.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0082]
 gi|313645055|gb|EFS09635.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0082]
          Length = 382

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 68/382 (17%), Positives = 137/382 (35%), Gaps = 58/382 (15%)

Query: 14  ERTRHGKIIYYFRK--GHGRRI-RLPYPHESTFI--PAYMSALTGSTPKREYINSPRKKP 68
            + ++G+  +YF+   G      +  Y  +  F       +AL+    + +    P    
Sbjct: 7   YKKKNGEKAWYFKTYLGIDPLTGKKKYTTKRGFRTQKEAKTALSRLELELQKTGMPTSTN 66

Query: 69  TTLK-----WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
           TT K     WL   Y+K+    S +  ++I F  +   I  K G+    KI T + +  V
Sbjct: 67  TTFKEAAELWL-ESYKKTVKESSYS-RTKIIFNKH---IYPKFGNIKLSKINTAYCQKVV 121

Query: 124 ESRKHTPSSAIQ--FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW---TKED 178
                  SS     F+  M  +FK+A+     + NP L++  PK + +  +     TKE 
Sbjct: 122 NDWSEKGSSKQYPLFVNYMNKVFKYAINIGLTSDNPTLNLIIPKPQIKTDKKLKLYTKEQ 181

Query: 179 MQQFKSFWSEGS------QPRLAFEFLLYSGLRCSDSCRAGVQHL--------------- 217
           ++ F +  S+        +    F  L +SG R  +       ++               
Sbjct: 182 LELFLNEVSQEQNPYFKNRDYTLFRLLAFSGCRIGEILALTWDNINFKTNEMAIKKTVAR 241

Query: 218 -------------QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM 264
                        ++N      +KT   +     +    L  +        F N++    
Sbjct: 242 SDKYYISETPKTKKSNRIIYLDEKTIKQLKFWKLEQRKYLFQLGFTKANYLFTNDENNFT 301

Query: 265 NATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETY 322
                +  +     +AG+     HG R   A++  +AGA   E+    G   +    +TY
Sbjct: 302 INQSVAERYNIYRERAGLPYIGLHGFRHTHASMLYEAGADHKEVQERMGHANIKTTMDTY 361

Query: 323 TKGADRIRLGIKNSRRISSVVD 344
           T   +  +   + ++++++ ++
Sbjct: 362 THITNSKK--EETTQKLTNYMN 381


>gi|326790923|ref|YP_004308744.1| integrase family protein [Clostridium lentocellum DSM 5427]
 gi|326541687|gb|ADZ83546.1| integrase family protein [Clostridium lentocellum DSM 5427]
          Length = 365

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 46/338 (13%), Positives = 102/338 (30%), Gaps = 38/338 (11%)

Query: 17  RHGKIIY---YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
           + G   Y   Y     G+R             A    L      ++          T   
Sbjct: 7   KRGNRYYPMIYLGYIGGKRKYKSGGGFDKRSEAKEELLKMQNKIKKNSIMIEADDMTFGE 66

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKH-TPS 131
           L  ++ +     +++  +  +++   ++ ++   G+   + I   HI+  + + KH +P+
Sbjct: 67  LAEQWYEMHAKPTISYRALENYKGILNKSLVPAFGNVKLKTIQPIHIQRYLMTLKHLSPA 126

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           +  ++   ++ +    V  + + I+P   +  P   T+    W    + +F +   + ++
Sbjct: 127 TIRKYFYVLKSIMDKGVEWKILEISPIKGITLPSLTTQEFTVWDNVQINKFLNIVKD-TK 185

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQN------------NIFSIKTQKTGTIITVELPD 239
             + F     +G+R  + C                       F +K  KT +     +  
Sbjct: 186 WYVPFLLAFTTGMRQGEICGLKWSDYNTITGDISVSRSMQRNFKLKDTKTKSSRRKIVL- 244

Query: 240 GFMKLLAMTPIGKET----------------FFIN-NDKQKMNATQFSIWFKAKATKAGV 282
              K        K                  F    N+ + +N       FK    +  +
Sbjct: 245 -LKKTKLALDYQKRCQEENENLLGKQYINSGFICTHNNGESINPENLGKTFKKLIKEYKL 303

Query: 283 -NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
                H +R   ATI    G     +    G   V   
Sbjct: 304 EPIRFHDIRHSFATILLQNGTNPKIVSEILGHSDVQTT 341


>gi|288573121|ref|ZP_06391478.1| integrase family protein [Dethiosulfovibrio peptidovorans DSM
           11002]
 gi|288568862|gb|EFC90419.1| integrase family protein [Dethiosulfovibrio peptidovorans DSM
           11002]
          Length = 319

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 50/291 (17%), Positives = 97/291 (33%), Gaps = 19/291 (6%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
              +  +         A  +   +        R   +      T +       S+   P+
Sbjct: 17  AQALDTFLTFKKATGAAPRTMTDYRKTVGAFFRDYEEAWNGPHTMRPSLVSWLSQDIAPA 76

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAI--NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
           +    L  +R  ++WAV +E      +P   ++R K + +  R  + ED++        G
Sbjct: 77  TYNLRLVYLRAFWRWAVEEELQPDSPDPFRGLKRRKDRGK-FRVVSLEDVKALLGGIPRG 135

Query: 190 S----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIITVELPDGF 241
           S    + R A  F L   +R  +        L  +  ++       KT    T+ L  G 
Sbjct: 136 SYAGERDRCAVVFTLDVAIRPGEMLHLLPGDLDLSGLTVTIPAHVAKTREARTLPLSPGT 195

Query: 242 MKLLAMTPIGKET-------FFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSA 294
           + +L      + +        F +   + M+ T +    K  A +A V+ + + +R  + 
Sbjct: 196 VDVLRAFLRYRPSSWPPTVPVFASETGRPMDTTHWGHRIKNHARRADVDLTPYDLRHAAC 255

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSRRISSVVD 344
           T+   AG     L    G         YT    D +R   + S  I  ++ 
Sbjct: 256 TLHLRAGMNTLVLQKLMGHTGPQMTMRYTHLDIDDLRDQQRASSPIEDLIP 306


>gi|325506468|gb|ADZ18106.1| site-specific tyrosine recombinase xerD [Chlamydophila psittaci
           6BC]
 gi|328914913|gb|AEB55746.1| integrase/recombinase XerD [Chlamydophila psittaci 6BC]
          Length = 299

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 40/264 (15%), Positives = 86/264 (32%), Gaps = 25/264 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH---IRSGVESRKHTPSSAIQFLTSMR 141
             L+ NS  ++       ++ +      +I+          +  RK   ++  + L +++
Sbjct: 22  RGLSCNSISAYIQDITLFLKINAITSIAEISQDSVHLFVDQLHKRKEAEATLARRLIALK 81

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-------EGSQPRL 194
           V F++    + +   P   +E PK         T +++    +            ++   
Sbjct: 82  VFFRFLKEAKLLEHPP--LIEHPKIWKRLPTVLTPKEVDTLLAIPKKTTTSSMISTRDTA 139

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD-----------GFMK 243
               L  +G+R S+ C   +  + ++   + T K      V L              F +
Sbjct: 140 ILHTLYSTGIRVSELCGLHIGDVSDDFLRV-TGKGSKTRLVPLGKLASEAIDAYLCPFRE 198

Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGA 302
            L      +   F++   +K+  +         A +    + S H +R   AT   D  A
Sbjct: 199 NLQKKQPEEHHLFLSIRGRKLERSCVWKRIHYYAKQVTHKRVSPHSLRHAFATHLLDNKA 258

Query: 303 TAHELMATYGWKTVDQAETYTKGA 326
               +    G   +   E YT  A
Sbjct: 259 DLRVIQEMLGHARIASTEVYTHVA 282


>gi|42520593|ref|NP_966508.1| phage integrase family site specific recombinase [Wolbachia
           endosymbiont of Drosophila melanogaster]
 gi|42410332|gb|AAS14442.1| site-specific recombinase, phage integrase family [Wolbachia
           endosymbiont of Drosophila melanogaster]
          Length = 309

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 42/286 (14%), Positives = 90/286 (31%), Gaps = 34/286 (11%)

Query: 71  LKWLISEYRK-SAHWGSLAVNSRISFESYFDQIIRKS-----GDFDYRKITT------KH 118
           L  +I ++ +      S + N+  S+      +I        G+ +   +        + 
Sbjct: 3   LGSIIEKWYEWLRRNRSYSPNTLESYMRDLKDLISFLNTHIGGEVNVGTLEKLSVPELRS 62

Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL-SVERPKRKTEGIRPWTKE 177
             +   +R     S  + L+ +R  FK+ ++  +   N  + S+ RP ++    +  +  
Sbjct: 63  WLTSRYARGVNARSNTRALSVIRNFFKY-IKNNHNIDNEAVFSLSRPIQRRTLPKALSIP 121

Query: 178 DMQQFKSFWSEGS--------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229
           D++                  +       L  +GLR S++    V  + N    I T K 
Sbjct: 122 DIKTLLKEMKLSDLGESWVVKREIAIIVLLYSTGLRISEALNLRVSDINNESL-IVTGKG 180

Query: 230 GTIITVELPDGFMKLLA---------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280
                V +     K +           T    +  F+    +K+  T  +   +      
Sbjct: 181 DKQRQVFILPVVKKCIQEYVKACPYLGTNNETQYLFLGVRGKKLGRTYVANRLQKIRRML 240

Query: 281 GVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            +    S H  R   AT           +    G  +++  + YT 
Sbjct: 241 NLPEILSPHAFRHSFATHLLQEDIDIRSIQQLLGHSSLETTQIYTH 286


>gi|222528753|ref|YP_002572635.1| integrase family protein [Caldicellulosiruptor bescii DSM 6725]
 gi|222455600|gb|ACM59862.1| integrase family protein [Caldicellulosiruptor bescii DSM 6725]
          Length = 325

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 44/296 (14%), Positives = 88/296 (29%), Gaps = 42/296 (14%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR-- 126
           T    +  +        L   +  S+    +  I  K G    + ++   I+    S   
Sbjct: 12  TFSQWLDIWMNQFMKIKLRPTTYSSYIQLINKHIKPKLGHIQLQNLSPLAIQECYNSLLL 71

Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
              +P +       +    K A++  Y+  N   +V  PK +   I+  + E +  F   
Sbjct: 72  ENLSPKTVKNIHVIIHSALKQAIKCGYINQNVSEAVALPKVERPEIKTLSSEQVTTFLQA 131

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT----------- 234
               S    AF   LY+GLR  +        +  +  +I  +++   +            
Sbjct: 132 AQTDSL-YPAFLLELYTGLRRGELLGLKWDDIDFDNCTIHVKRSLVRVYDHNLKKTTLLL 190

Query: 235 -----------VELPDGFMKLLAMTPIGKETF-------------FINNDKQKMNATQFS 270
                      + +PD  +  L       +               F+      ++   F 
Sbjct: 191 QPPKTKAGYRVIPIPDFVVAELKELYEEHQRIKLSQPNFNSLNLMFVTTQGTPIDPRNFE 250

Query: 271 IWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
             FK    KA + N   H +R   AT+          +    G + +    + Y+ 
Sbjct: 251 RKFKQLLKKANLPNIRLHDLRHTVATLLLQQNVHPKIVQEILGHRDISTTLDIYSH 306


>gi|169632680|ref|YP_001706416.1| site-specific tyrosine recombinase [Acinetobacter baumannii SDF]
 gi|169151472|emb|CAP00223.1| site-specific tyrosine recombinase [Acinetobacter baumannii]
          Length = 308

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 49/279 (17%), Positives = 98/279 (35%), Gaps = 27/279 (9%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVESR---- 126
            L+S + K     + + ++  ++E      +   +    D R +    +R  +  R    
Sbjct: 10  QLLSMWLKERKIQNQSEHTITAYERDVRSFLEFCELKKVDLRNVEASDLREYLAQRVEQD 69

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
           + + SS  + LTS+R   KWA + +Y+ INP    +  ++          E + Q     
Sbjct: 70  QLSSSSMQRHLTSIRQFMKWAEQGKYLEINPTDDFKLKRQPRPLPGMIDIETVNQILDQP 129

Query: 187 SEG--------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV--- 235
                       + +   E L  SGLR ++     ++ +  N   ++    G    +   
Sbjct: 130 MPEKPVDQQLWLRDKAMLELLYSSGLRLAELQGLTIKDIDFNRQLVRITGKGNKTRIVPF 189

Query: 236 --ELPDGFMKLLAMTPIGKETF------FINNDKQKMNATQFSIWFKAKATKAGV--NKS 285
             +  +  +  L +  I K  F      FI+     +   Q     K +A +AGV  +  
Sbjct: 190 GKKAKESLLNWLKIYNIWKGHFDQNASVFISQRGGALTPRQIEKRVKLQAQRAGVNVDLH 249

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            H +R   A+    +      +    G   +   + YT 
Sbjct: 250 PHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTH 288


>gi|296132971|ref|YP_003640218.1| integrase family protein [Thermincola sp. JR]
 gi|296031549|gb|ADG82317.1| integrase family protein [Thermincola potens JR]
          Length = 282

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 39/274 (14%), Positives = 91/274 (33%), Gaps = 21/274 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----SRKHTPSSAIQFLTSM 140
              +  +   +  +     +  G      +    +R  +      RK + S   Q  +++
Sbjct: 15  AGFSPKTHDDYLRHVKHFQKHFG-KPLEHMGYDEVREFLHHAITQRKLSCSYVNQTYSAI 73

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200
           R  ++  +  ++   N    V R KR+       + ++++   +      + +       
Sbjct: 74  RFFYETVLGWDW---N-MKQVPRVKREKTLPAVLSIDEVKAIFNVTK-NIKHKAILMTTY 128

Query: 201 YSGLRCSDSCRAGVQHLQNN--IFSIKTQKTGTIITVELPDGFMKLLAMTPIG-KETFFI 257
            +GLR  +  R  +  + +      IK  K        L    + +L       + ++++
Sbjct: 129 AAGLRVGEVTRLKISDIDSKNMQILIKLGKGKKARYSLLSPANLSILRQYWRQYRPSYWL 188

Query: 258 NNDK---QKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYG 312
              K   + ++       F      AG+ K  S H +R   AT   +AG     +    G
Sbjct: 189 FPGKPSDKPISVRTVQQIFYDAKVLAGIQKDVSIHTLRHCFATHLLEAGTDILHIQQLLG 248

Query: 313 WKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346
             ++     Y       R+ + N +    ++D D
Sbjct: 249 HTSIHTTCIYLH---LRRMDVLNVKSPLDLLDGD 279


>gi|161507474|ref|YP_001577428.1| integrase-recombinase [Lactobacillus helveticus DPC 4571]
 gi|160348463|gb|ABX27137.1| Integrase-recombinase [Lactobacillus helveticus DPC 4571]
          Length = 242

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 81/221 (36%), Gaps = 21/221 (9%)

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           +  RK   SS  + ++S+   F++  R++++ I+P   +   + + +    +   +++Q 
Sbjct: 4   LADRKLVRSSQARQMSSLHSFFRFLTRRKFIKIDPTQGITLRRGEKKLPEFFFGNELKQV 63

Query: 183 KSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------ 232
                       +    FE    +G+R S+     ++ +  N+ +I     G        
Sbjct: 64  FDSLKGNKPLTMRNLALFELFYATGMRVSEVSNLTLRQIDLNLQTILVHGKGNKDRYVAF 123

Query: 233 -------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS 285
                  +   L D    LL      ++  F++N    ++        +    +AG++  
Sbjct: 124 DDHTKKSLVRYLEDARPNLLKDET--EQHVFLSNLGNPLSKRGIEYVMQKTFNQAGISGK 181

Query: 286 --AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              H +R   AT   + GA    +    G  ++   + YT 
Sbjct: 182 VHPHELRHTFATAMLNNGADLRSVQELLGHSSLSATQIYTH 222


>gi|218902477|ref|YP_002450311.1| integrase/recombinase [Bacillus cereus AH820]
 gi|218540144|gb|ACK92542.1| integrase/recombinase [Bacillus cereus AH820]
          Length = 306

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 43/282 (15%), Positives = 96/282 (34%), Gaps = 31/282 (10%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVESRK 127
           L++ + E+++   + +L+  +   + +  ++      +    D R I    ++S +   K
Sbjct: 3   LRFAMKEFQEEKEYNNLSHRTIEVYMATLNEFRNFCSELEIVDLRDIREVTVKSYLRYCK 62

Query: 128 HTPSSA----IQFLTSMRVLFKWAVRQEYVAI--NPCLSVERPKRKTEGIRPWTKEDMQQ 181
            T  +        L  +R+ F +   +E +    NP   ++  K  T+ I  +T   +QQ
Sbjct: 63  KTRGNGVVTCNSKLHHLRIFFNYWQNEEVMEHKDNPVRKLKPAKEDTK-IEVFTDYHIQQ 121

Query: 182 FKSFWSE---------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGT 231
              ++           G +       LL +G+R  +      + +   N   +   K   
Sbjct: 122 MLRYYRRLKTRDKSFFGYRDHAIIVLLLSTGIRLGELVNIQWKDIDLVNRSVVLFGKARK 181

Query: 232 IITVELPDGFMKLLA--MTPIGKE------TFFINNDKQKMNATQFSIWFKAKATK---A 280
             ++ + D   K +      + KE        F + + ++++     + F+  +      
Sbjct: 182 QQSIPITDKLTKEICEWRIFVEKELGSIPQYLFTSREGKQLSPNAVKLIFQRLSKVMNFK 241

Query: 281 GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
            V  S H  R   A      G     L        +   E Y
Sbjct: 242 DVRLSCHTFRHSFAHRCIMQGMDVFTLQKLLRHSNLRMTERY 283


>gi|193078105|gb|ABO13046.2| site-specific tyrosine recombinase [Acinetobacter baumannii ATCC
           17978]
          Length = 308

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 48/279 (17%), Positives = 98/279 (35%), Gaps = 27/279 (9%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVESR---- 126
            L+S + K     + + ++  +++      +   +    D R +    +R  +  R    
Sbjct: 10  QLLSMWLKERKIQNQSEHTITAYKRDVKSFLEFCELKKVDLRNVEASDLREYLAQRVEQD 69

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
           + + SS  + LTS+R   KWA + +Y+ INP    +  ++          E + Q     
Sbjct: 70  QLSSSSMQRHLTSIRQFMKWAEQGKYLEINPTDDFKLKRQPRPLPGMIDIEMVNQILDQP 129

Query: 187 SEG--------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV--- 235
                       + +   E L  SGLR ++     ++ +  N   ++    G    +   
Sbjct: 130 MPEKPVDQQLWLRDKAMLELLYSSGLRLAELQGLTIKDIDFNRQLVRITGKGNKTRIVPF 189

Query: 236 --ELPDGFMKLLAMTPIGKETF------FINNDKQKMNATQFSIWFKAKATKAGV--NKS 285
             +  +  +  L +  I K  F      FI+     +   Q     K +A +AGV  +  
Sbjct: 190 GKKAKESLLNWLKIYNIWKGHFDQNASVFISQRGGALTPRQIEKRVKLQAQRAGVNVDLH 249

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            H +R   A+    +      +    G   +   + YT 
Sbjct: 250 PHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTH 288


>gi|27363605|ref|NP_759133.1| site-specific recombinase XerD [Vibrio vulnificus CMCP6]
 gi|27359721|gb|AAO08660.1| Site-specific recombinase XerD [Vibrio vulnificus CMCP6]
          Length = 348

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 47/304 (15%), Positives = 101/304 (33%), Gaps = 53/304 (17%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS----GVESRKHTPSSAIQFLTSMRVL 143
           +  +   +    +Q+ +K  D  + K+  K +       +    ++ +S    + ++R  
Sbjct: 34  SAKTVRKYRGLLEQL-KKFVDGQFDKVELKDLEQFSGGWLHRAGYSAASRKVAVAAIRGF 92

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLAFEFL 199
           + +  ++  VA NP   +  PK      R    +  +            G +       L
Sbjct: 93  YSFLAKRRLVAKNPASDLVYPKIGRRLPRFMGLKSAEALLFQPELTSLSGVRDSAMLSLL 152

Query: 200 LYSGLRCSDSCRAG------VQHLQNNIFSIKTQKTGTI---ITVEL-----------PD 239
           +  G R +  C          Q+ +    +I+T + G     + V L             
Sbjct: 153 IGCGFRVAGLCGLNESQLIWYQYGEVERLAIRTMEKGERERLVPVPLEAMLLVQAYLGHP 212

Query: 240 GFMKLLAMTPIGKETFFINNDKQK------------MNATQFSIWFKAKATKAGVN---K 284
               +  +   G +  F+N   +             ++        K  A  AGV     
Sbjct: 213 DLKHVDRLLDDGDQVLFVNLRNRHVPEWEHRGELRRLSTRAVDRMIKKYAIAAGVPEDQA 272

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
            AH +R    T  A++ ++  ++ A  G      +E YT           + R++++V+D
Sbjct: 273 HAHALRHLFGTELAESDSSTLQIQALMGHADPKTSEIYTH---------ISMRKMTNVLD 323

Query: 345 SDDP 348
             +P
Sbjct: 324 KGNP 327


>gi|302391372|ref|YP_003827192.1| integrase family protein [Acetohalobium arabaticum DSM 5501]
 gi|302203449|gb|ADL12127.1| integrase family protein [Acetohalobium arabaticum DSM 5501]
          Length = 310

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 74/212 (34%), Gaps = 16/212 (7%)

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ--- 191
           + + S++  + +  +   +  N    +  PK++        ++++ Q      E S+   
Sbjct: 90  RKIASLKSFWNYLCKVRKLTDNIASDLSLPKKEPTTEIYLKQKEINQLFVAIDEISRNII 149

Query: 192 -PRLAFEFLLYSGLRCSDSCRAGVQHLQNN--IFSIKTQKTGTIITVELPDGFMKLLA-- 246
             +     LLY+G+R S+     +  +     I  I   K G    + +    M  +   
Sbjct: 150 RDKSILAVLLYTGIRVSECINLNLSDIDLESRILRIVKGKGGKSRMIGINKELMPYIKDY 209

Query: 247 -----MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISAD 299
                   I     F++    ++N       FK    +AG+    + H  R    +    
Sbjct: 210 LQKRQQVLIEGNPLFLSERGNRLNKRTLQYHFKRWVEEAGLPDEVTVHKCRHTFLSHLCQ 269

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            GA+  E+    G K +   + Y    D+ RL
Sbjct: 270 NGASLAEIKQISGHKNLASLQRYLHN-DQKRL 300


>gi|59713090|ref|YP_205866.1| site-specific tyrosine recombinase XerC [Vibrio fischeri ES114]
 gi|197336470|ref|YP_002157268.1| tyrosine recombinase XerC [Vibrio fischeri MJ11]
 gi|59481191|gb|AAW86978.1| site-specific tyrosine recombinase [Vibrio fischeri ES114]
 gi|197317960|gb|ACH67407.1| tyrosine recombinase XerC [Vibrio fischeri MJ11]
          Length = 303

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 40/260 (15%), Positives = 87/260 (33%), Gaps = 20/260 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLT 138
             L++ ++ +++     I  +    G   ++ +    +R             SS    L+
Sbjct: 24  KGLSIYTQRNYKRQLTTIAEQLVELGVESWQDVDAGWVRQVTSKGMREGLKASSLSTRLS 83

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WSEGSQPRLA 195
           S+R  F + V +  +  NP   V  P++     +    ++M Q            + R  
Sbjct: 84  SLRSFFDFLVLRNVLTANPAKGVSAPRKSRPLPKNIDVDEMGQLLEVNEDDPLSIRDRAI 143

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLL--------A 246
            E +  +GLR ++     V+ +Q     ++   K      V       + L         
Sbjct: 144 MELMYGAGLRLAELVSIDVRDIQLRQGELRVIGKGDKERKVPFSGQAKEWLGHWLRVRNQ 203

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATA 304
           +    ++  F++    +++             K GVN   S H +R   AT   ++    
Sbjct: 204 LAKPEEKGLFVSKLGVRISHRNVQKRMAEWGLKQGVNSHISPHKLRHSFATHMLESSGNL 263

Query: 305 HELMATYGWKTVDQAETYTK 324
             +    G + +   + YT 
Sbjct: 264 RAVQELLGHENISTTQIYTH 283


>gi|183984816|ref|YP_001853107.1| prophage integrase [Mycobacterium marinum M]
 gi|183178142|gb|ACC43252.1| prophage integrase [Mycobacterium marinum M]
          Length = 385

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 54/355 (15%), Positives = 113/355 (31%), Gaps = 48/355 (13%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFI-------------PAYMSALTG 53
           +P  + K     G+  Y  R        +  P+  +                A+ +   G
Sbjct: 5   VPRGIRKRTNSAGQARYQVR------YLVRDPNSPSGWVETSSTFATMREARAFKADRDG 58

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYR 112
                     PR    +L  + ++Y  S    +++  +   +  +++ +I  + G     
Sbjct: 59  EAAIGARRFDPRLGRASLSAIWTQYSASKQ-PAVSPKTWSGYAQHWELRISPRFGHVPVD 117

Query: 113 KITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK-TEGI 171
           +I+ K ++  +      P + +  L  +R +   A     + INP   V   +    E  
Sbjct: 118 EISRKDVQQFIGGLTVGPWAKLATLRLLRSILDMAREDGRIHINPAQGVSSGRIPARERH 177

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ------------- 218
           R  +  ++        +          L ++GLR S+     V  +              
Sbjct: 178 RYLSATEVAALAHACGD---QGDIVTILAFTGLRWSELVGLRVGDIDLKARRLYVRQAAP 234

Query: 219 --NNIFSIKTQKTGTII-TVELPDGFMKLLAMTPIGKET---FFINNDKQKMNAT---QF 269
                  +   KT   + TV LP   +  L      + T      + +   + +    + 
Sbjct: 235 DVEGRIIVGPPKTRAAVRTVPLPRIVIDALKPRIENRSTKEQAITSPNGGFLRSNNWRRH 294

Query: 270 SIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYT 323
           + W KA         + H +R   A+++  +GA    +  T G  T    A  Y+
Sbjct: 295 THWNKALKKTGLAPLTIHDLRHTYASLARKSGADLRYVQKTMGHSTPTVTANIYS 349


>gi|118462850|ref|YP_882918.1| site-specific tyrosine recombinase XerC [Mycobacterium avium 104]
 gi|118164137|gb|ABK65034.1| tyrosine recombinase XerC [Mycobacterium avium 104]
          Length = 301

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 35/267 (13%), Positives = 86/267 (32%), Gaps = 26/267 (9%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDFD--YRKITTKHIRSGVESRKHT---PSSAIQFLTSM 140
             + ++R ++      ++  +G+       ++   +RS + +        ++  +  +++
Sbjct: 20  GRSAHTRRAYLGDLRSLLAFAGERGTGLDGLSLPLLRSWLSAAAAGGVARTTLARRTSAV 79

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED--------MQQFKSFWSEGSQP 192
           +    WAVR+  +  +P   ++ PK          ++                     + 
Sbjct: 80  KAFTAWAVRRGLLTADPAARLQVPKTHRTLPAVLRQDQALGAMAAAKNGAAQGDPIALRD 139

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMT--- 248
           RL  E L  +G+R S+ C   +  +      ++   K     +V       + L      
Sbjct: 140 RLIVEMLYATGIRVSELCGLDIDDVDTGRRLVRVLGKGNKQRSVPFGAPAGEALHAWLAD 199

Query: 249 -------PIGKETFFINNDKQKMNATQFSIWFKA--KATKAGVNKSAHGVRKFSATISAD 299
                          +    ++++  Q          A     +   HG+R  +AT   +
Sbjct: 200 GRPALANAESGPALLLGARGRRLDVRQARTVVHQTIAAVSGAPDMGPHGLRHSAATHLLE 259

Query: 300 AGATAHELMATYGWKTVDQAETYTKGA 326
            GA    +    G  ++   + YT  A
Sbjct: 260 GGADLRVVQELLGHSSLATTQLYTHVA 286


>gi|41409056|ref|NP_961892.1| site-specific tyrosine recombinase XerC [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41397415|gb|AAS05275.1| XerC [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 301

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 35/267 (13%), Positives = 86/267 (32%), Gaps = 26/267 (9%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDFD--YRKITTKHIRSGVESRKHT---PSSAIQFLTSM 140
             + ++R ++      ++  +G+       ++   +RS + +        ++  +  +++
Sbjct: 20  GRSAHTRRAYLGDLRSLLAFAGERGTGLDGLSLPLLRSWLSAAAAGGVARTTLARRTSAV 79

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED--------MQQFKSFWSEGSQP 192
           +    WAVR+  +  +P   ++ PK          ++                     + 
Sbjct: 80  KAFTAWAVRRGLLTADPAARLQVPKTHRTLPAVLRQDQALGAMAAAKTGAAQGDPIALRD 139

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMT--- 248
           RL  E L  +G+R S+ C   +  +      ++   K     +V       + L      
Sbjct: 140 RLIVEMLYATGIRVSELCGLDIDDVDTGRRLVRVLGKGNKQRSVPFGAPAGEALHAWLAD 199

Query: 249 -------PIGKETFFINNDKQKMNATQFSIWFKA--KATKAGVNKSAHGVRKFSATISAD 299
                          +    ++++  Q          A     +   HG+R  +AT   +
Sbjct: 200 GRPALANAESGPALLLGARGRRLDVRQARTVVHQTIAAVSGAPDMGPHGLRHSAATHLLE 259

Query: 300 AGATAHELMATYGWKTVDQAETYTKGA 326
            GA    +    G  ++   + YT  A
Sbjct: 260 GGADLRVVQELLGHSSLATTQLYTHVA 286


>gi|325678355|ref|ZP_08157975.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
 gi|324109856|gb|EGC04052.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
          Length = 403

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 65/391 (16%), Positives = 128/391 (32%), Gaps = 70/391 (17%)

Query: 9   PFVTKERTRHGK-IIYYFRKGHGRRIRLPYPHE------STFIPAYMSALTGSTP----K 57
            ++ + + + G+   Y FR  +G  +      +         + A  +           +
Sbjct: 2   AYIERRKNKKGELTAYRFRVYNGYDVNGKQMVQFKTWVPPEGMTAKQAEKEAQRLAVLFE 61

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHWGSLAVN-SRISFESYFD-QIIRKSGDFDYRKIT 115
            E  +         + L  ++     +  L    + +  E     +I    G     KIT
Sbjct: 62  EECAHGQVTATVKFQKLCEQWF--GEYAELNHRSTTLQREHLLAGRIYPALGHLRIDKIT 119

Query: 116 TKHIRSGVESRKHTPSSAIQ------------FLTSMRVLFKWAVRQEYVAINPCLSVER 163
            + I+  + S    P +  +             L+ +  +F++A+R + ++ NPC  V  
Sbjct: 120 ARDIQKFINSLA-KPGANKRNGKPLSQKTMRHHLSFISSIFEYAIRLDMISTNPCSKVII 178

Query: 164 PKRKTEGI-------RPWTKEDMQQFKSFWSEGS-QPRLAFEFLLYSGLRCSDSCRAGVQ 215
           PK    G          +TKE  ++F +   E   + R+ F   +Y+G R  +      +
Sbjct: 179 PKIDANGKVYKKPEKHIYTKEQAKEFMTILREAPIKYRVFFTLAIYTGCRRGEILGIEWK 238

Query: 216 HLQ----------------NNIFSIKTQKTGTIIT-VELPDGFMKLLAMTPIGKETF--- 255
           ++                  N       KT      V+LP   +KLL      ++++   
Sbjct: 239 NIDFENRTIMIDHTSNYTAKNGIYTDATKTDKSTRLVDLPPTVIKLLKAYKHDQDSYKAN 298

Query: 256 -----------FINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGAT 303
                      F   D   M+      W K +  +        H +R F A++  +AG  
Sbjct: 299 LGDKWQEHDRLFTKWDGAPMHPATPYSWLKKECERRSFPFYGVHTLRHFFASVEIEAGVD 358

Query: 304 AHELMATYGWKTVDQA-ETYTKG-ADRIRLG 332
              + A  G  T      TY+   A+  +  
Sbjct: 359 PTTVAAMLGHSTPQTTLTTYSHYFAESKKRA 389


>gi|145629633|ref|ZP_01785430.1| tyrosine recombinase [Haemophilus influenzae 22.1-21]
 gi|144978144|gb|EDJ87917.1| tyrosine recombinase [Haemophilus influenzae 22.1-21]
          Length = 295

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 38/260 (14%), Positives = 88/260 (33%), Gaps = 21/260 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRKHTPSSAIQFLT 138
             ++ ++  +++   D  I+     D    T       + I +  + +     S    L+
Sbjct: 16  RQMSPHTITNYQHQLDATIKILAQQDIHSWTQVTPSVVRFILAESKKQGLKEKSLALRLS 75

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS---FWSEGSQPRLA 195
           ++R    + V+Q  + +NP   +  PK+     +    E +Q+  +         + R  
Sbjct: 76  ALRRFLSFLVQQGELKVNPATGISAPKQGKHLPKNMDGEQVQRLLANDSKEPIDIRDRAI 135

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLLA 246
            E +  SGLR S+     +  +   +  ++    G    V          + +       
Sbjct: 136 LELMYSSGLRLSELQGLDLNSINTRVREVRVIGKGNKERVVPFGRYASHAIQEWLKVRAL 195

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATA 304
             P   E  F++    +++        +    + G+N   + H +R   AT   +A +  
Sbjct: 196 FNP-KDEALFVSQLGNRISHRAIQKRLETWGIRQGLNNHLNPHKLRHSFATHMLEASSDL 254

Query: 305 HELMATYGWKTVDQAETYTK 324
             +    G   +   + YT 
Sbjct: 255 RAVQELLGHSNLSTTQIYTH 274


>gi|113461442|ref|YP_719511.1| site-specific tyrosine recombinase XerC [Haemophilus somnus 129PT]
 gi|112823485|gb|ABI25574.1| tyrosine recombinase XerC subunit [Haemophilus somnus 129PT]
          Length = 291

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 36/260 (13%), Positives = 84/260 (32%), Gaps = 21/260 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRKHTPSSAIQFLT 138
             L+  + I+++   ++I+      D +          + + +          S    L+
Sbjct: 12  RQLSPYTLINYQRQLEKIVVILQQNDIQSWQQVTPSVVRFVLAQSRKEGLHERSLALRLS 71

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF---KSFWSEGSQPRLA 195
           ++R    + V Q  + +N  + +  PK+     +    E +QQ    +S      + +  
Sbjct: 72  ALRQFLNYLVVQGELKVNSAVGISAPKQSKYLPKNMDMEQVQQLLTNESKEPIDLRDKAM 131

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLLA 246
            E +  SGLR S+     +  +      ++    G    +          +       L 
Sbjct: 132 MELMYSSGLRLSELQSLNLNSINIRSREVRVIGKGNKERILPFGRYASQAIQQWLKVRLL 191

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATA 304
             P   E  F++    +++        +    + G+N     H +R   AT   +  +  
Sbjct: 192 FNP-KDEALFVSQLGNRISHRSIQKRMETWGIRQGLNGHLNPHKLRHSFATHMLENSSDL 250

Query: 305 HELMATYGWKTVDQAETYTK 324
             +    G   +   + YT 
Sbjct: 251 RAVQELLGHSNLSTTQIYTH 270


>gi|302858546|gb|ADL71292.1| gp32 [Mycobacterium phage Eagle]
          Length = 373

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 61/354 (17%), Positives = 127/354 (35%), Gaps = 38/354 (10%)

Query: 24  YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP--RKKPTTLKWL-ISEY-R 79
           Y      +R   P  +++        A      +      P  R +   +  + + EY R
Sbjct: 23  YVCPLDDKRYNAPTTYDNRMDAEAWLAKEKRLIENGEWTPPSERLRKAKVSAITVEEYTR 82

Query: 80  KSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESR-KHTPSSAIQFL 137
           K      LA  ++  +E++   +I    G+    ++T   +R+      K  P++     
Sbjct: 83  KWLSERDLAPGTKNLYETHAAKRIYPALGETPVAEMTPAVVRAWWAGMGKQYPTARRHAY 142

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE 197
             +R +   AV  + ++ NPC  +E+       +   + E++++  +        R+A  
Sbjct: 143 NVLRAVMNTAVEDKLLSENPCR-IEQKAAAERDVEALSVEELEKVAA--EVHEHYRIAVY 199

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTII----------------TVELPD 239
            L ++ LR  +      + + ++      + ++    +                 V +P 
Sbjct: 200 ILAWTSLRFGELIELRRKDIMDDGETMHFRVRRGAARVGQKIVVGETKTVRSKRPVTVPP 259

Query: 240 GFMKLLA--------MTPIGKETFFINNDKQKMNATQFSIWFKA-KATKAGVNKSAHGVR 290
              +++         M    +        KQ++    F+   K   A     +   H +R
Sbjct: 260 HVAEMVREHMKDRTKMNKGPEALLVTTTQKQRLTKAAFTRSLKKGYAKIGRTDLRVHDLR 319

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
              AT +A AGAT  ELM   G  T   A  Y + A   R  I+ ++R+S++  
Sbjct: 320 AVGATYAAQAGATTKELMVRLGHTTPRMAMKY-QMASEAR-DIEIAKRMSALAT 371


>gi|196232913|ref|ZP_03131763.1| integrase family protein [Chthoniobacter flavus Ellin428]
 gi|196223112|gb|EDY17632.1| integrase family protein [Chthoniobacter flavus Ellin428]
          Length = 298

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 38/261 (14%), Positives = 86/261 (32%), Gaps = 21/261 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLTSMR 141
            + +  + I++     +  +      ++++T  H R  +     R     +      ++R
Sbjct: 21  RNASPRTLINYRHALAEFRQVPNLPAWKELTADHFRRYLFECSKRGIARPTIRLHFAALR 80

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK---------SFWSEGSQP 192
             +K+   +  +  NP   V+ PK + +     T + + +           +        
Sbjct: 81  TFYKFLTERHGLKENPLKEVQLPKLEKKLPLVLTTKQIDELLSAPLRIEKSAKAPVWMPA 140

Query: 193 R--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-----ELPDGFMKLL 245
           R     E    SGLR ++     V ++     S++    G    V            K  
Sbjct: 141 RDAAILELFYSSGLRLAELVALDVANVDIYSESVRVLGKGRKERVVPVGAPALTAIQKYR 200

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGAT 303
               +     F++  ++++ A    +  +       +    S H +R   AT   DAGA 
Sbjct: 201 QEANVHAGPLFLSKVRRRLTAANVWLVIRRYLPHTSIPLKVSPHKLRHSFATHLLDAGAD 260

Query: 304 AHELMATYGWKTVDQAETYTK 324
              + +  G  ++   + YT 
Sbjct: 261 LRSVQSLLGHASLSTTQIYTH 281


>gi|152992017|ref|YP_001357738.1| site-specific DNA tyrosine recombinase XerD [Sulfurovum sp.
           NBC37-1]
 gi|151423878|dbj|BAF71381.1| site-specific DNA tyrosine recombinase XerD [Sulfurovum sp.
           NBC37-1]
          Length = 271

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 35/252 (13%), Positives = 79/252 (31%), Gaps = 17/252 (6%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLF 144
            +L   +  S+     Q+          K+ T  +   + + ++   +  + L+S+   F
Sbjct: 16  KALDALTISSYLGDLRQLEEAV-QKPLTKLDTTDVLKFLSTFENK-RTLNRKLSSINTFF 73

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKSFWSEGSQPRLAFEFLL 200
            +   Q +      + +   K      +  + E++           + G +      FL 
Sbjct: 74  HFCHLQNFTHE--KIRIPMAKVPKNLPKYLSPEEIMEGISLIDRSSTIGLRDYALILFLY 131

Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD----GFMKLLAMTPIGKETFF 256
            SG R S++  A    +      I+  K      V L           L    +     +
Sbjct: 132 ASGCRISEALNAQRSDILEGWLKIRFAKGEKERVVPLAPIAIEAVEAYLQAQDMSSSYLW 191

Query: 257 INNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTV 316
           +N   ++++        K       +  S H +R   A+     GA    +    G  ++
Sbjct: 192 LNYRAEQLSRISAYKIVKKY-----LGVSPHVLRHSFASSLIIGGADLRVVQELLGHSSL 246

Query: 317 DQAETYTKGADR 328
           +  + YT    +
Sbjct: 247 ETTQIYTHIQKQ 258


>gi|300727851|ref|ZP_07061231.1| phage integrase family protein [Prevotella bryantii B14]
 gi|299774899|gb|EFI71511.1| phage integrase family protein [Prevotella bryantii B14]
          Length = 405

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 45/281 (16%), Positives = 92/281 (32%), Gaps = 23/281 (8%)

Query: 69  TTLKWL--ISEYRK-----SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121
            T         Y +     S  +  +       F+ + D + +            K    
Sbjct: 112 GTWGNWRSCLRYLEAYCDESTTFSEITPEWVKGFKDFLDNVEKD-------SCKRKDREK 164

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
                  + +S   +   ++     A  +  + +NP   V+  K+        + E++ +
Sbjct: 165 VSVFNGLSLNSKHSYFNKLKACLNAAFEEHIIVVNPLRGVKGFKQDEVAREHLSWEEVVK 224

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NN--IFSIKTQKTGTIITVEL 237
             +        + AF F  ++GLR SD  R     +Q  +       K +KTG    +++
Sbjct: 225 LDATPCRYPVLKNAFLFSCFTGLRKSDIERLTWGEVQKFDGFTRIVWKQKKTGGQEYLDI 284

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSAT 295
           P+  +K L       +T      K  +N    S+  +     A +NK    H  R   A 
Sbjct: 285 PEQAVKYLGTPQEEPDTPV---FKGFLNGALLSLELRRWMLAASINKDITYHCSRHTFAV 341

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
           +  + GA  + +    G + +   + Y +  D  +      
Sbjct: 342 LMLNFGADIYTVSKMLGHREIATTQIYARVLDEKKRAAIML 382


>gi|255022087|ref|ZP_05294091.1| prophage integrase [Acidithiobacillus caldus ATCC 51756]
 gi|254968445|gb|EET26003.1| prophage integrase [Acidithiobacillus caldus ATCC 51756]
          Length = 341

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 46/317 (14%), Positives = 97/317 (30%), Gaps = 20/317 (6%)

Query: 17  RHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           + GK  +  +      R  R     +          L     ++  +        T    
Sbjct: 4   KRGKTWWVDFVDASGQRVRRSAGTTDKAAAQELHDQLRAEAWRQSKLG--EAPARTWDEA 61

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--TPSS 132
              + +          +    E   + +         + I+ + IR  +E +K   + S+
Sbjct: 62  ALRWLEEKT----HKATLEKDEQQLEWLHPYLSGKKLKDISWETIRGILEIKKKETSAST 117

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
           A  +L  +R + + A +  ++ + P       K +       T+E+  +           
Sbjct: 118 ANHYLALIRGILRRANKWGWLEVLPSFEPYPVKNQRLRW--LTQEEAARLLQELPPHLAS 175

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGFMKLLAMT 248
              F  L  +GLR S+        +              K    I V L +  +++L   
Sbjct: 176 MAEFSLL--TGLRQSNVTGLEWSQVDMQRRCAWIHPDQAKARKPIPVSLNEQAVQVLLRQ 233

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHEL 307
                 +      + +       W +    +AG+ + + HG+R   A+    AG     L
Sbjct: 234 IGKHPRYVFTYKGRPVTQVTTKAW-RNALQRAGIEDFTWHGLRHTWASWHVQAGTPLLVL 292

Query: 308 MATYGWKTVDQAETYTK 324
               GW ++D  + Y  
Sbjct: 293 QQMGGWASLDMVQRYAH 309


>gi|188588813|ref|YP_001921530.1| phage integrase family protein [Clostridium botulinum E3 str.
           Alaska E43]
 gi|188499094|gb|ACD52230.1| phage integrase family protein [Clostridium botulinum E3 str.
           Alaska E43]
          Length = 382

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 40/352 (11%), Positives = 111/352 (31%), Gaps = 43/352 (12%)

Query: 15  RTRHGKIIYYFRKGH--GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           R +  +  YYF  G   G+R R+      T   A  +            +   +   +  
Sbjct: 6   RKKGNRWYYYFEAGRVNGKRKRIERKGGDTKKEAQQALRMALNEFNNTGSYVNETNMSFS 65

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
             +  +       +   N++ +++S+ +  +    G +  +++    ++  +  +     
Sbjct: 66  DFLDYWFDEYVMKNCKYNTQQTYKSFININLKPNLGIYKIKQLNYAALQEFLNKQYAHGY 125

Query: 132 SAIQFLTSMRVLFKWAVRQ-----EYVAINPCLSVERPKRKT--EGIRPWTKEDMQQFKS 184
           S    L  +R +   ++       +++ +NP  ++  P+     +     + E+  +   
Sbjct: 126 SKN-TLARLRSIISHSLEMAVSPYQFIKVNPAKNLTLPRFDNIAKENIVISIENFNKIIG 184

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK---------------- 228
            +  G+   +  +    +G+R  + C      +     +I+ +K                
Sbjct: 185 RFPCGTSFYIPLQIAFNTGMRVGEVCGLTWDCVDFEKKTIRIEKILIFKTKQGYEFSTPK 244

Query: 229 -TGTIITVELPDGFMKLLAMTPI--------------GKETFFINNDKQKMNATQFSIWF 273
             G+I T+ + D  + +L                            +   +  T      
Sbjct: 245 TKGSIRTISIGDTLINILKTHKNWQEENKKNYGSYYNDNNFVCTKENGSFVTMTSLRYLS 304

Query: 274 KAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
           +    +  +  + H +R   AT+  + GA   ++    G        + Y+ 
Sbjct: 305 RIINMELQIKFNFHSLRHTHATMLLEGGANIKDIQDRLGHSKFSTTMDLYSH 356


>gi|241664436|ref|YP_002982796.1| integrase family protein [Ralstonia pickettii 12D]
 gi|240866463|gb|ACS64124.1| integrase family protein [Ralstonia pickettii 12D]
          Length = 351

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 47/284 (16%), Positives = 101/284 (35%), Gaps = 21/284 (7%)

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119
           Y++    +  T+   +  Y +          ++ S       +    G +    ++   +
Sbjct: 50  YLSRGPSEKLTVAGALRRYMEEVSVTK-KPTTQRSERFTAQHLEAFFGKYSMAAVSADLV 108

Query: 120 RSGVESRKHTPSSAIQF---LTSMRVLFKWAVRQEY---VAINPCLSVERPKRKTEGIRP 173
               + R     S       L  +  LF+ A+ QE+   +  NP  ++ +P   T   R 
Sbjct: 109 AKYRDVRLAAGKSNNTVRIELAMLGHLFRTAI-QEWSIGLTFNPVANIRKPSPGTGRDRR 167

Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNI--FSIKTQKT 229
            + ++  +  +  S  S P L +   L   +G+R S+        +  N    +++  K 
Sbjct: 168 LSLDEQARLFAAVSAHSNPMLGWIVGLAVETGMRSSEIATLRRSQVDLNRRVVNLRDTKN 227

Query: 230 GTIITVELPDGFMKLLAMT------PIGKETFFINNDKQ--KMNATQFSIWFKAKATKAG 281
           G+   V L      +L +       P+  +  F     +  K     F   + +     G
Sbjct: 228 GSARVVPLTRAAADVLRLALSNPIRPLDSDLVFFGEPGRDGKRRPYVFQKLWTSIVRDIG 287

Query: 282 V-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           + +   H +R  + +   +AG +  E+ A  G K++   + YT 
Sbjct: 288 LADLHFHDLRHEAVSRLVEAGLSDQEVAAISGHKSMQMLKRYTH 331


>gi|260885407|ref|ZP_05896922.1| integrase/recombinase XerC [Prevotella tannerae ATCC 51259]
 gi|260852293|gb|EEX72162.1| integrase/recombinase XerC [Prevotella tannerae ATCC 51259]
          Length = 299

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 36/271 (13%), Positives = 86/271 (31%), Gaps = 25/271 (9%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQI----IRKSGDFDYRKITTKHIRSGVESRKHTP-- 130
            Y  S      +  + + +    +      I +     ++ I    +R  +  R      
Sbjct: 14  SYLASD--KGYSPLTIMKYRDVLEGFEAFYISQEATLTWQTIDADLVRRWIVWRMDDGIV 71

Query: 131 -SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF--KSFWS 187
             +  + L+++R  +++ +    +  +P   V+ PK          + +M +   K+ + 
Sbjct: 72  GRTVRRDLSALRSFYRYLLVLGLIEKDPMCFVKNPKSAQPLPAFVRQSEMDRLFDKTHFP 131

Query: 188 E---GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMK 243
           E   G +  L       +G+R ++        +  +   ++ T K      +       +
Sbjct: 132 ETFEGQRDYLILLTFYSTGVRRAELLAMQWVDIDLSRCEVRVTGKRNKQRIIPFGAELAE 191

Query: 244 LLAMTPIGKE--------TFFINNDKQKMNATQFSIWFKAK-ATKAGVNK-SAHGVRKFS 293
                   +           FI ++ + +  TQ         +    + K S H +R   
Sbjct: 192 AFQAYYAARMDLVKHMSGPLFIQSNGRPLQPTQVGRIVHDYLSLVTNIKKRSPHVLRHSF 251

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324
           AT   + GA    +    G   ++    YT 
Sbjct: 252 ATAMLNNGADLMAVKELLGHSNLNTTAIYTH 282


>gi|184201180|ref|YP_001855387.1| tyrosine recombinase XerD [Kocuria rhizophila DC2201]
 gi|183581410|dbj|BAG29881.1| tyrosine recombinase XerD [Kocuria rhizophila DC2201]
          Length = 304

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 43/268 (16%), Positives = 83/268 (30%), Gaps = 35/268 (13%)

Query: 90  NSRISFESYFDQIIRKSGDFDY-RKITTKHIRSGVESRKH--------TPSSAIQFLTSM 140
             R     Y   +   +      R IT  H+R+ V   +         +  S+ + L ++
Sbjct: 21  AYRRDLARYLQHLTATAAHVRVPRDITADHVRAFVRRIREGDAAHPALSARSSARVLAAV 80

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAF 196
           R    + V +  V  +    V  P       +     +++   +        G + R   
Sbjct: 81  RGAHAFWVTESSVDTDVASRVSPPMPPQRLPKAIGVTEVENLLAAPDPDTPAGLRARAFL 140

Query: 197 EFLLYSGLRCSDSCRAGVQHL-----QNNIFSIKTQKTGTIITVEL-----------PDG 240
           E L  +G R S++    V  L     ++      T K      V +              
Sbjct: 141 ELLYATGARISEAVALDVDDLAGLHDEDLALIRVTGKGAKQRLVPVGSFAVAALDRYLIR 200

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK----SAHGVRKFSATI 296
               LA    G    F+N    +++        K  A    +++    + H +R   AT 
Sbjct: 201 ARPELARHGRGSPAVFLNARGTRISRQTAWNMVKDAART--IHQEERITPHTLRHSFATH 258

Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324
             + GA    +    G  ++   + YT+
Sbjct: 259 LLEGGADLRVVQELLGHASLATTQIYTR 286


>gi|169795024|ref|YP_001712817.1| site-specific tyrosine recombinase [Acinetobacter baumannii AYE]
 gi|294858572|ref|ZP_06796341.1| site-specific tyrosine recombinase [Acinetobacter sp. 6013150]
 gi|301345401|ref|ZP_07226142.1| site-specific tyrosine recombinase [Acinetobacter baumannii AB056]
 gi|301511585|ref|ZP_07236822.1| site-specific tyrosine recombinase [Acinetobacter baumannii AB058]
 gi|169147951|emb|CAM85814.1| site-specific tyrosine recombinase [Acinetobacter baumannii AYE]
          Length = 308

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 49/279 (17%), Positives = 98/279 (35%), Gaps = 27/279 (9%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVESR---- 126
            L+S + K     + + ++  ++E      +   +    D R +    +R  +  R    
Sbjct: 10  QLLSMWLKERKIQNQSEHTITAYERDVRSFLEFCELKKVDLRNVEASDLREYLAQRVEQD 69

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
           + + SS  + LTS+R   KWA + +Y+ INP    +  ++          E + Q     
Sbjct: 70  QLSSSSMQRHLTSIRQFMKWAEQGKYLEINPTDDFKLKRQPRPLPGMIDIETVNQILDQP 129

Query: 187 SEG--------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV--- 235
                       + +   E L  SGLR ++     ++ +  N   ++    G    +   
Sbjct: 130 MPEKPIDQQLWLRDKAMLELLYSSGLRLAELQGLTIKDIDFNRQLVRITGKGNKTRIVPF 189

Query: 236 --ELPDGFMKLLAMTPIGKETF------FINNDKQKMNATQFSIWFKAKATKAGV--NKS 285
             +  +  +  L +  I K  F      FI+     +   Q     K +A +AGV  +  
Sbjct: 190 GKKAKESLLNWLKIYNIWKGHFDQNASVFISQRGGALTPRQIEKRVKLQAQRAGVNVDLH 249

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            H +R   A+    +      +    G   +   + YT 
Sbjct: 250 PHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTH 288


>gi|329943079|ref|ZP_08291853.1| phage integrase, N-terminal SAM-like domain protein [Chlamydophila
           psittaci Cal10]
 gi|313848235|emb|CBY17236.1| putative site-specific recombinase [Chlamydophila psittaci RD1]
 gi|328814626|gb|EGF84616.1| phage integrase, N-terminal SAM-like domain protein [Chlamydophila
           psittaci Cal10]
          Length = 299

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 40/264 (15%), Positives = 86/264 (32%), Gaps = 25/264 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH---IRSGVESRKHTPSSAIQFLTSMR 141
             L+ NS  ++       ++ +      +I+          +  RK   ++  + L +++
Sbjct: 22  RGLSCNSISAYIQDITLFLKINAITSIAEISQDSVHLFVDQLHKRKEAEATLARRLIALK 81

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-------EGSQPRL 194
           V F++    + +   P   +E PK         T +++    +            ++   
Sbjct: 82  VFFRFLKEAKLLEHPP--LIEHPKIWKRLPTVLTPKEVDTLLAIPKKTTTSSMISTRDTA 139

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD-----------GFMK 243
               L  +G+R S+ C   +  + ++   + T K      V L              F +
Sbjct: 140 ILHTLYSTGIRVSELCGLHIGDVSDDFLRV-TGKGSKTRLVPLGKLASKAIDAYLCPFRE 198

Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGA 302
            L      +   F++   +K+  +         A +    + S H +R   AT   D  A
Sbjct: 199 NLQKKQPEEHHLFLSIRGRKLERSCVWKRIHYYAKQVTHKRVSPHSLRHAFATHLLDNKA 258

Query: 303 TAHELMATYGWKTVDQAETYTKGA 326
               +    G   +   E YT  A
Sbjct: 259 DLRVIQEMLGHARIASTEVYTHVA 282


>gi|254418058|ref|ZP_05031782.1| site-specific recombinase, phage integrase family protein
           [Brevundimonas sp. BAL3]
 gi|196184235|gb|EDX79211.1| site-specific recombinase, phage integrase family protein
           [Brevundimonas sp. BAL3]
          Length = 306

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 41/255 (16%), Positives = 92/255 (36%), Gaps = 36/255 (14%)

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
           + +  R  + ++A +  +S R  +++A+ + +   +P   ++ PK+     +  +++++ 
Sbjct: 56  ADLSRRGLSAATAARRRSSARQFYRFALAEGWRTDDPSRRLDAPKQGRPLPKLLSRDEID 115

Query: 181 QFKSFWSE-----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIIT 234
           +  +  +      G +     E    SGLR S+     V  ++ +  + I   K G    
Sbjct: 116 RLLAAAAARDAAGGLRLVALVEMAYASGLRVSELLGLKVDAVRRDPAYLIVRGKGGKERL 175

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQK------------------MNATQFSIWFKAK 276
             L     + +      ++      D +K                  +   +F+      
Sbjct: 176 APLNTAAREAIKAWLTARDARLKGKDGRKPEAPDSPWLFPSSGRTGHLTPRRFAQLLDEA 235

Query: 277 ATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           A  AG++    S H +R   AT   + GA    +    G   +   + YT  A       
Sbjct: 236 APVAGIDPARVSPHVLRHAFATHLLEGGADLRVVQTLLGHADIATTQIYTHVA------- 288

Query: 334 KNSRRISSVVDSDDP 348
             + R++ VV  + P
Sbjct: 289 --TDRLAQVVQQNHP 301


>gi|257876703|ref|ZP_05656356.1| site-specific recombinase [Enterococcus casseliflavus EC20]
 gi|257810869|gb|EEV39689.1| site-specific recombinase [Enterococcus casseliflavus EC20]
          Length = 299

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 44/281 (15%), Positives = 103/281 (36%), Gaps = 36/281 (12%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIR---SGVE 124
            ++LI E          +  ++ +++   +     +++SG+ D   +  + +R   S + 
Sbjct: 11  FRYLIVE-------RGYSEKTKKAYQEDMNDFFHFLKESGNEDPLAVEYRDVRVYLSYLT 63

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
            R+++ +S  + + S+R  +++  + E V  NP   +   K+  +  R + +++M     
Sbjct: 64  ERRYSRNSISRKMASLRSFYQFLTKHEIVKENPFAYIHLKKKNAKLPRFFYEKEMDALFQ 123

Query: 185 F----WSEGSQPRLAFEFLLYSGLRCSDS--CRAGVQHLQNNIFSIKTQKTGTI------ 232
                     + +   E L  SGLR S+      G    ++ +  I  +           
Sbjct: 124 SVAGDEPLQQRNQALLEVLYGSGLRVSECSSLTLGAIDWESGVLLIHGKGNKDRYVPFGS 183

Query: 233 -----ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ----FSIWFKAKATKAGVN 283
                +   L  G  +L+       E  F+N+    + AT      +   +  +  + ++
Sbjct: 184 YAQAAVKRYLSSGRKQLMEKQNKEHEVLFVNHLGDGITATGIEYVLNQIIRKSSLDSKIH 243

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              H +R   AT   + GA    +    G   +   + Y  
Sbjct: 244 --PHMLRHTFATHLLNNGADMRTVQELLGHANLSTTQIYAH 282


>gi|240851325|ref|YP_002972728.1| integrase /recombinase XerC [Bartonella grahamii as4aup]
 gi|240268448|gb|ACS52036.1| integrase /recombinase XerC [Bartonella grahamii as4aup]
          Length = 322

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 34/269 (12%), Positives = 78/269 (28%), Gaps = 29/269 (10%)

Query: 85  GSLAVNSRISFES----YFDQIIRKSGDFD----YRKITTKHIRSGVESRKH---TPSSA 133
             ++  +  ++E     +   + +             +    +R+ +  R+    +  S 
Sbjct: 37  RRMSAQTMQAYERDTRQFLSFLCQHLSHTPTLTDLAHLRISDLRAYLAYRRTNNVSARSL 96

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE-------DMQQFKSFW 186
            + +  +R  FK+  R+  V +     +  PK      +P   +          Q ++  
Sbjct: 97  SRGVAGIRSFFKYLSREGIVNVPAAQLIRSPKHPKSLPKPLAIKSALHIVKQENQLENEP 156

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTGTIITVELP----DG 240
              ++       L   G+R S++     +   +        T K G    V L     + 
Sbjct: 157 WISARNAAVLMLLYGCGMRISEALSLTPEQFSDPEKTSLFITGKGGKTRLVPLIKVVYEA 216

Query: 241 FMKLLAMTP---IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSAT 295
               L   P   +  +  F       +         +      G+    + H +R   AT
Sbjct: 217 VQNYLKCCPYPLVNNQPIFRGARGGPLQPAIIQKTVRNLRASLGLPETATPHTLRHSFAT 276

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTK 324
                G     +    G  ++   + YT 
Sbjct: 277 HLLSRGGDLRTIQELLGHASLSTTQIYTH 305


>gi|189501600|ref|YP_001957317.1| integrase family protein [Candidatus Amoebophilus asiaticus 5a2]
 gi|189497041|gb|ACE05588.1| integrase family protein [Candidatus Amoebophilus asiaticus 5a2]
          Length = 292

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 37/256 (14%), Positives = 83/256 (32%), Gaps = 23/256 (8%)

Query: 90  NSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMRVLFKW 146
             +      F  +       +    T+K +RS +           S  + + S++  + +
Sbjct: 22  AYQTDLNQLFSYLQTNFQIAELSHATSKLLRSWIMELAKQGLNNRSINRKIASLKAFYGF 81

Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-----EGSQPRLAFEFLLY 201
             ++EY+  +    +   K K        ++++             EG + RL  E L  
Sbjct: 82  LYKKEYIPSDITTQLTGLKVKKGLPIFLREQELLHLLDEHPFTDDFEGWRARLILELLYS 141

Query: 202 SGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET----- 254
           +G+R  +      + +   +    +   K      + LP   + ++      + T     
Sbjct: 142 TGIRLQELINLQDRDINFYDRTIRV-LGKRNKERILPLPKHILPIIEGYLQQRNTIIANA 200

Query: 255 ---FFINNDKQKMNATQFSIWFKAKAT---KAGVNKSAHGVRKFSATISADAGATAHELM 308
              FF+  + +           K+      +A  + S H +R   AT   + GA    + 
Sbjct: 201 PAHFFVTTNNKPCYPMLIYKLVKSYLASYTQADRH-SPHILRHTFATHLLNRGADLQAIK 259

Query: 309 ATYGWKTVDQAETYTK 324
              G  ++   + YT 
Sbjct: 260 ELLGHTSLAATQVYTH 275


>gi|294054714|ref|YP_003548372.1| integrase family protein [Coraliomargarita akajimensis DSM 45221]
 gi|293614047|gb|ADE54202.1| integrase family protein [Coraliomargarita akajimensis DSM 45221]
          Length = 387

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 42/282 (14%), Positives = 81/282 (28%), Gaps = 37/282 (13%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKI------TTKHIRSGVESRKHTPSSAIQFLTSMR 141
           A  +   + +  +  +    +     I        K  R    +   +P +    + ++R
Sbjct: 98  APRTHERYNAIVNAFLDSLHERKKVSIGYLNAKDIKKFRDLQLAAGKSPRTCNLEVKTLR 157

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201
                A RQ  V  N   ++E    +      +T ED+++     S       A     +
Sbjct: 158 AALNAARRQGLVTTNAAEALEMLPTEKSKKAVFTAEDIEKILEVASADWSG--ATLVGFF 215

Query: 202 SGLRCSDSCRAGVQ--HLQNNIFSIKTQKTG-----TIITVELPDGFMKLLAMTPIGKE- 253
           +G R  D      +   L   + +   +KT      T + + +    +  L   P   + 
Sbjct: 216 TGARLGDVANLTWESVDLSAKLINFVPEKTSHSEHPTKVVIPIAKTLLDYLMTLPSSDDP 275

Query: 254 --TFFINNDKQKMNA-TQFSIWFKAKATKAGV-----------------NKSAHGVRKFS 293
               F +   +        S  F      A +                   S H +R   
Sbjct: 276 NAYLFPSLAGRNTGGHNGLSRQFLHILESAKLVSAARVKKKGEKGRIQSALSFHSLRHSC 335

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYT-KGADRIRLGIK 334
            +  A+ G          G  + +    YT    DR+R  I 
Sbjct: 336 TSAMANGGIPVEVRQLITGHASAEMNAIYTHHELDRLRKAID 377


>gi|307265141|ref|ZP_07546700.1| tyrosine recombinase XerD [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919763|gb|EFN49978.1| tyrosine recombinase XerD [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 290

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 33/243 (13%), Positives = 89/243 (36%), Gaps = 17/243 (6%)

Query: 91  SRISFESYFDQIIRKSGDF-----DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFK 145
           +  S+    +Q +    +      + +K T  +    ++ +  + ++  + L+S++  + 
Sbjct: 23  TLESYNRDINQFLNYLEEIGINCYNVKKSTILNYLYYLKKKGKSQATVSRNLSSLKAFYH 82

Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFEFLLY 201
           +   ++ +  +P   +  PK + +     T E +    S       +G + +   E L  
Sbjct: 83  YLFMKKKIEEDPTYMINTPKVEKKQPTTLTVEQVDMLLSLDFGDDEKGLRDKALIELLYA 142

Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII------TVELPDGFMKLLAMTPIGKETF 255
           +GL+ S+     ++ +  +   +  +     +       +E    +++       G+ T 
Sbjct: 143 TGLKVSEVISLKLEDVNLSYGYVVIRSNKERVIPIGSHAIEALKNYIEKGRKAKNGENTL 202

Query: 256 FINNDKQKMNATQFSIWFKAKATKA--GVNKSAHGVRKFSATISADAGATAHELMATYGW 313
           F+N   QK+         +    K   G   + + +R+  A      GA    +    G+
Sbjct: 203 FLNLRGQKLTRQGCWKIIREYTDKINPGFPVTPNTLRQSFAQHMLQNGADIRAVQEMLGY 262

Query: 314 KTV 316
           +T 
Sbjct: 263 QTD 265


>gi|269925988|ref|YP_003322611.1| integrase family protein [Thermobaculum terrenum ATCC BAA-798]
 gi|269789648|gb|ACZ41789.1| integrase family protein [Thermobaculum terrenum ATCC BAA-798]
          Length = 316

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 36/277 (12%), Positives = 93/277 (33%), Gaps = 37/277 (13%)

Query: 86  SLAVNSRISFESYFDQIIRKSG-----DFDYRKITTKHIRSGVE----SRKHTPSSAIQF 136
            L+  S  +++     ++               +  + +++        ++    + +++
Sbjct: 27  GLSPASVRTYQQVLYALVDWLELRLQSKAHVSNLDKQSVKAWQRYLVVEKQLDDDTYVKY 86

Query: 137 LTSMRVLFKWAVRQEY--VAINPCLSVERPKRKTE--GIRPWTKEDMQQFKSFWSE---- 188
           ++++R    +   ++   +  +    ++ PK   +   I+  + +D++            
Sbjct: 87  ISALRSFVNYLHDEDLTSLTRD---DIKLPKSHMDVSSIKALSVDDVRALLMAPDPSTPW 143

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHL------QNNIFSIKTQKTGTIITVELPDG-- 240
           G + R     L  +G+R ++ C      L      ++ I  +     G    V   D   
Sbjct: 144 GKRDRALLALLYCTGMRIAELCSLNRDQLPLEHLCEDEILEVSIIGKGRKPRVVFVDAVA 203

Query: 241 ---FMKLLAMTPIGKETFFINNDKQ----KMNATQFSIWFKAKATKAGVNK--SAHGVRK 291
                + L +        F++        ++      +  K  A KAG+    + H +R 
Sbjct: 204 QRLLKEYLQLRTDENPALFVSFKGPTAEDRLTPRAIQMSIKKYAKKAGLKTIPTPHTMRH 263

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
             A      GA    + A  G  ++   + YT+  DR
Sbjct: 264 TFAVHKLQGGADTRIVQAFLGHSSLATTQRYTRVTDR 300


>gi|254448959|ref|ZP_05062414.1| tyrosine recombinase XerC [gamma proteobacterium HTCC5015]
 gi|198261496|gb|EDY85786.1| tyrosine recombinase XerC [gamma proteobacterium HTCC5015]
          Length = 301

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 35/278 (12%), Positives = 83/278 (29%), Gaps = 28/278 (10%)

Query: 75  ISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYR-----KITTKHIRSGVESRKH 128
           +  Y +        + ++  ++      +    G              +   +       
Sbjct: 1   MQRYLQHLMAERRYSSHTLDNYRRDLKALCDYIGPLPIDWQQVIGQDVRDFAAASHRGGL 60

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
              S  + L++ R  F++ +R+  +  NP   V  P+ + +       + +Q      S+
Sbjct: 61  ASRSIARRLSAARGFFQFLIREGQLQANPAQGVPAPRGEKKLPEVLDADRLQHLLDAPSQ 120

Query: 189 GS-------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT------- 234
                    + R   E    +GLR ++        L++    ++    G+          
Sbjct: 121 RDDANSADVRERAILELFYSTGLRLAELAALDCADLRHQERDLEVVGKGSKARHVMVGGK 180

Query: 235 --VELPDGFMK----LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286
               L D        L       ++  FIN    +++           A + G+++    
Sbjct: 181 ARESLDDWLAVRSQWLEGSGAKREDALFINQRGGRLSVRGIQQRIADYAQRRGLDRNLHP 240

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           H +R   AT   ++      +    G   +   + YT 
Sbjct: 241 HMLRHSFATHLLESSGDLRAVQKLLGHANIGTTQIYTH 278


>gi|184159192|ref|YP_001847531.1| site-specific recombinase XerC [Acinetobacter baumannii ACICU]
 gi|294840725|ref|ZP_06785408.1| site-specific tyrosine recombinase [Acinetobacter sp. 6014059]
 gi|183210786|gb|ACC58184.1| Site-specific recombinase XerC [Acinetobacter baumannii ACICU]
          Length = 308

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 49/279 (17%), Positives = 98/279 (35%), Gaps = 27/279 (9%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVESR---- 126
            L+S + K     + + ++  ++E      +   +    D R +    +R  +  R    
Sbjct: 10  QLLSMWLKERKIQNQSEHTITAYERDVKSFLEFCELKKVDLRNVEASDLREYLAQRVEQD 69

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
           + + SS  + LTS+R   KWA + +Y+ INP    +  ++          E + Q     
Sbjct: 70  QLSSSSMQRHLTSIRQFMKWAEQGKYLEINPTDDFKLKRQPRPLPGMIDIETVNQILDQP 129

Query: 187 SEG--------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV--- 235
                       + +   E L  SGLR ++     ++ +  N   ++    G    +   
Sbjct: 130 MPEKPVDQQLWLRDKAMLELLYSSGLRLAELQGLTIKDIDFNRQLVRITGKGNKTRIVPF 189

Query: 236 --ELPDGFMKLLAMTPIGKETF------FINNDKQKMNATQFSIWFKAKATKAGV--NKS 285
             +  +  +  L +  I K  F      FI+     +   Q     K +A +AGV  +  
Sbjct: 190 GKKAKESLLNWLKIYNIWKGHFDQNASVFISQRGGALTPRQIEKRVKLQAQRAGVNVDLH 249

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            H +R   A+    +      +    G   +   + YT 
Sbjct: 250 PHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTH 288


>gi|152984207|ref|YP_001349101.1| integrase [Pseudomonas aeruginosa PA7]
 gi|150959365|gb|ABR81390.1| integrase [Pseudomonas aeruginosa PA7]
          Length = 399

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 56/327 (17%), Positives = 111/327 (33%), Gaps = 31/327 (9%)

Query: 45  PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-II 103
             +++ +          N+ RK P T+K     + +         +++  ++   D+ II
Sbjct: 75  QEWLAEVRKGGDPSAAKNAARKAP-TMKEFCHTFMEDYSKQRNKPSTQRGYQGVIDRCII 133

Query: 104 RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA--INPCLSV 161
              G    + +    + + ++   +  + A +    +R +F  A          NPC  V
Sbjct: 134 PIMGRMKVQDVKRPDVATLMKKLAYKQAEANRTFGVLRKMFNLAEVWGLRPDGTNPCRHV 193

Query: 162 ERPKRKTEGIRPWTKEDM----QQFKSFWSEGSQPR---LAFEFLLYSGLRCSDSCRAGV 214
                  +  R    +++    +Q +S  +EG +     LA         R S+ C    
Sbjct: 194 PM-YPPGKETRLIVDDELVRIFRQLESLEAEGLENYVIPLAIRLQFEFAARRSEICPLEW 252

Query: 215 QHLQNN--IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI----NNDKQKMN-AT 267
             +            KTG  I+  + +   +LL+  P  +   ++    N+  + M    
Sbjct: 253 DWIDLEKRRVVWPDSKTGG-ISKPMSEEAYRLLSTAPRREGCPYVLPSPNDPTRHMTHGE 311

Query: 268 QFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
            +  W +        +   HG+R  + T  A++G      M   G KTV     Y    D
Sbjct: 312 HYGGWTRVLKAAGVPHVGTHGIRHRATTDIANSGVPTKVGMKLTGHKTVAMFMHYVHTED 371

Query: 328 R-----------IRLGIKNSRRISSVV 343
           +            RL I  +RR   + 
Sbjct: 372 KPVRDAAELVANRRLAITGARRTEEMA 398


>gi|46580167|ref|YP_010975.1| phage integrase family site specific recombinase [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|46449584|gb|AAS96234.1| site-specific recombinase, phage integrase family [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|311233841|gb|ADP86695.1| integrase family protein [Desulfovibrio vulgaris RCH1]
          Length = 373

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 47/317 (14%), Positives = 93/317 (29%), Gaps = 19/317 (5%)

Query: 25  FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT--TLKWLISEYRKSA 82
           +R G  +              AY + +     K         +      +  +  Y    
Sbjct: 34  YRHGGKKVWETIGRKSEGVNAAYAARVRAERVKEVEAGRFIARDEMPVFRDALERYLTVH 93

Query: 83  HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT---PSSAIQFLTS 139
             G  + +    +  +   I    GD    +I   HI     S       P +    +  
Sbjct: 94  AKGKSSESHMRGYFEH--HIAPLFGDAKMDRIKPIHIEELKRSMAEKGRSPQTIRHAIAL 151

Query: 140 MRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP-RLAFE 197
           +R +++  V    Y   +P   VE PK     +R  T+ +           S+       
Sbjct: 152 VRQVYRKCVAWGIYTGTSPTDGVEMPKVDAARLRFLTEAEAASLLHALHRRSRQWHDIAY 211

Query: 198 FLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTI---ITVELPDGFMKLLAMTPIGK 252
             LY+G+R  +     V H+   + +  +   K GT    +T  + +      A     +
Sbjct: 212 LSLYTGMRLGEVLGLQVGHVNVADGVIDVMDAKAGTRAAYMTAGVKEILAARCAGRDAKE 271

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGV-----NKSAHGVRKFSATISADAGATAHEL 307
             F      +    +        +    GV         H +R    +  A  G   + +
Sbjct: 272 FVFVQRGGGRVRYISSVFSRVADELFNDGVTDARHKVVFHTLRHTFGSWLAQRGVPLYTI 331

Query: 308 MATYGWKTVDQAETYTK 324
               G  +++  + Y+K
Sbjct: 332 AVLMGHSSLEMTKRYSK 348


>gi|317058175|ref|ZP_07922660.1| DNA integration/recombination/inversion protein [Fusobacterium sp.
           3_1_5R]
 gi|313683851|gb|EFS20686.1| DNA integration/recombination/inversion protein [Fusobacterium sp.
           3_1_5R]
          Length = 325

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 46/315 (14%), Positives = 111/315 (35%), Gaps = 23/315 (7%)

Query: 46  AYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK 105
            +  AL+     ++          T ++L  ++       +L+ NS   ++   ++    
Sbjct: 14  QFSLALSKYNLVKKGKYEVVVSENTNEFLWKKFFIGKRIENLSENSLKVYKDNLERF-DS 72

Query: 106 SGDFDYRKITTKHIRSGVESRKHTPSSA-----IQFLTSMRVLFKWAVRQEYVAINPCLS 160
               ++  +TT+ +R  + +     SS            ++  F++ V +  +  NP   
Sbjct: 73  VIKKNFLDVTTEDVRFYIATVISKNSSVKETYLDNIRRFLKTFFQFLVDEGLIKTNPVTR 132

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220
           ++  +  T    P++  ++++ ++  S     +   E L+ +  R  +     +  +   
Sbjct: 133 IKPIRGNTSEKLPFSNMEIEKLRNACSS-CLEKAVIEILISTAFRRQELAEIKLSDIDFE 191

Query: 221 IFSIKTQKTGTIITVELPD-----GFMKLLAMTPIGKETFFINND---------KQKMNA 266
             SI+T   G  +     +       ++ +      K  F               +  +A
Sbjct: 192 KGSIRTIGKGKKLGYGFLNAKALLALIEYIEKERESKSVFLFIRGKNKRFREKAGEPYDA 251

Query: 267 TQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           +      K    KAGV     H  R+ +AT + D G    ++      + +     YT  
Sbjct: 252 SSLYALIKKIGKKAGVTHVHPHRFRRTAATKALDRGLGLEDVKELLRHEDIKTTLIYT-T 310

Query: 326 ADRIRLGIKNSRRIS 340
            ++ RL  K++R + 
Sbjct: 311 LNKDRLKDKHNRFLD 325


>gi|50914372|ref|YP_060344.1| DNA integration/recombination/invertion protein [Streptococcus
           pyogenes MGAS10394]
 gi|50903446|gb|AAT87161.1| DNA integration/recombination/invertion protein [Streptococcus
           pyogenes MGAS10394]
          Length = 374

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 49/302 (16%), Positives = 94/302 (31%), Gaps = 27/302 (8%)

Query: 48  MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG 107
            +A       +  ++ P+    T   L  ++ K             +  +    I+ K  
Sbjct: 52  QAARETLISLQAELDKPKSS-MTFGALTDQWLKEYEKTVQGSTYLKTERNINKHILPKLD 110

Query: 108 DFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167
                 I    I+   E   +      + L  +R +   AVR  Y+  NP L +  PK K
Sbjct: 111 KVKIGDINPLLIQRLTEEWCNDLKYGGKILGLVRNILNLAVRYGYINNNPALPITPPKIK 170

Query: 168 TEG---IRPWTKEDMQQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222
            +       +T + ++QF     +         F  L ++G+R  +        L  N  
Sbjct: 171 RKRKMNNNFYTLDQLKQFLELVEKTDNIEKIALFRLLAFTGIRKGELLALTWDDLNGNTL 230

Query: 223 SIKTQKTGTIITVEL------------------PDGFMKLLAMTPIGKETFFINNDKQKM 264
           SI    T T + +E+                   +   +L    P     F  +     M
Sbjct: 231 SINKAVTRTQVGLEIDVTKTKSSDRLISLDDETLEILQELHETFPTSTLMF-QSESGGIM 289

Query: 265 NATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TY 322
             +    W         + + + HG R   A++  ++G +  ++    G   +      Y
Sbjct: 290 TPSLPRKWLLQIIKGTDLPQITIHGFRHTHASLLFESGLSLKQVQHRLGHGDLQTTMNVY 349

Query: 323 TK 324
           T 
Sbjct: 350 TH 351


>gi|19746280|ref|NP_607416.1| integrase [Streptococcus pyogenes MGAS8232]
 gi|19748468|gb|AAL97915.1| integrase [Streptococcus pyogenes MGAS8232]
          Length = 362

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 49/302 (16%), Positives = 94/302 (31%), Gaps = 27/302 (8%)

Query: 48  MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG 107
            +A       +  ++ P+    T   L  ++ K             +  +    I+ K  
Sbjct: 40  QAARETLISLQAELDKPKSS-MTFGALTDQWLKEYEKTVQGSTYLKTERNINKHILPKLD 98

Query: 108 DFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167
                 I    I+   E   +      + L  +R +   AVR  Y+  NP L +  PK K
Sbjct: 99  KVKIGDINPLLIQRLTEEWCNDLKYGGKILGLVRNILNLAVRYGYINNNPALPITPPKIK 158

Query: 168 TEG---IRPWTKEDMQQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222
            +       +T + ++QF     +         F  L ++G+R  +        L  N  
Sbjct: 159 RKRKMNNNFYTLDQLKQFLELVEKTDNIEKIALFRLLAFTGIRKGELLALTWDDLNGNTL 218

Query: 223 SIKTQKTGTIITVEL------------------PDGFMKLLAMTPIGKETFFINNDKQKM 264
           SI    T T + +E+                   +   +L    P     F  +     M
Sbjct: 219 SINKAVTRTQVGLEIDVTKTKSSDRLISLDDETLEILQELHETFPTSTLMF-QSESGGIM 277

Query: 265 NATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TY 322
             +    W         + + + HG R   A++  ++G +  ++    G   +      Y
Sbjct: 278 TPSLPRKWLLQIIKGTDLPQITIHGFRHTHASLLFESGLSLKQVQHRLGHGDLQTTMNVY 337

Query: 323 TK 324
           T 
Sbjct: 338 TH 339


>gi|299137517|ref|ZP_07030698.1| integrase family protein [Acidobacterium sp. MP5ACTX8]
 gi|298600158|gb|EFI56315.1| integrase family protein [Acidobacterium sp. MP5ACTX8]
          Length = 346

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 57/322 (17%), Positives = 104/322 (32%), Gaps = 30/322 (9%)

Query: 20  KIIYYFRKGHGRRIRLPYPHESTFIPAYM----SALTGSTP----KREYINSPRKKPTTL 71
            I YY     GR  R     +S  +  Y      AL G+      K + +         L
Sbjct: 24  WIRYYV---DGREHREKVGRQSDAVDLYRIRRADALRGAKMPANMKNKGVKFEEIGKHAL 80

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
           +W I   RK             +F    + I++  G     +I    I + ++    +P+
Sbjct: 81  EWYIEHGRKDV----------KNFRIRMNIILKDFGHRVAEEIKPSEIDAWLKKYDWSPA 130

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           +   +       FK A     V+ NP   VE+   K   +R  + E+  + +        
Sbjct: 131 TKNCYKNVFGKTFKIAFADGKVSGNPARLVEQRPEKNARLRFLSAEEEAKIREAIDLRCP 190

Query: 192 PRLA-FEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248
             +   +  L +G+R S+        +  +     +   K G+   + +    +K     
Sbjct: 191 RHMPELDIALNTGMRKSEQYSLEWGQVSFRRKRILLDETKNGSSREIPMNKTCVKAFEEL 250

Query: 249 PIGKET---FFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATA 304
              +      F +   + +N ++   WF      A V N + H +R    +    AG   
Sbjct: 251 HADRPHEGRIFQSKYGRDLNDSR--AWFDRVVEDAKVSNFTWHALRHTFISRLVMAGVDL 308

Query: 305 HELMATYGWKTVDQAETYTKGA 326
                  G KT+     Y   A
Sbjct: 309 RTAQELAGHKTISMTVRYAHLA 330


>gi|258511365|ref|YP_003184799.1| integrase family protein [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257478091|gb|ACV58410.1| integrase family protein [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 307

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 44/284 (15%), Positives = 90/284 (31%), Gaps = 21/284 (7%)

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE--- 124
             ++   +  +   A     +  +  S+    +   +   D     +     R       
Sbjct: 2   TQSVGDAVKVFLDDAA-LRFSPRTVRSYGQDLEAFRQWLDDRGVYDLDALSTRDVRMHAS 60

Query: 125 ---SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
              ++    SS  + L+ +R   ++   + +V      +V  PKR     R   +E++  
Sbjct: 61  DLLAKGAAKSSVARRLSCLRTFLRFCAERGWVRQVMAKNVRLPKRDRRLPRYLHEEEVAA 120

Query: 182 FKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE 236
                        + R   EFL  +G+R S+     +  L  +    +   K G    V 
Sbjct: 121 LIDHVGGDDFVALRDRALLEFLYATGVRVSECVHLDIGDLDLSAGFARVLGKGGRERYVM 180

Query: 237 LPDGFMKLLAM-TPIGKET-----FFINNDKQKMNATQFSIWFKAKATKAGVNKSAH--G 288
           +    +  L    P+          FIN    ++         + +  +    +S H  G
Sbjct: 181 VGRRAVDALRRYLPLRDRMARCSAVFINRRGGRLTDRSVRRVLERRIQEVPGLRSIHVHG 240

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           +R   AT   + GA    +    G  ++   + YT    R +L 
Sbjct: 241 LRHSFATHMLNGGADLRSVQELLGHASLSSTQIYTHT-SREQLA 283


>gi|167041103|gb|ABZ05864.1| putative Phage integrase family protein [uncultured marine
           microorganism HF4000_48F7]
          Length = 317

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 36/275 (13%), Positives = 92/275 (33%), Gaps = 25/275 (9%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF---DYRKITTKHIRSGVESR 126
           T +  +  +       + +  +  ++     +  + +G+    DY++    +  +    R
Sbjct: 31  TFQKAVERFLAHCEARN-SPRTVYTYSDSLKRWQQANGNPCVQDYQRSQLDNYIAQERER 89

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
                +    + +++  F WA  +E V   P   +++ +  T   + W+++ ++  + + 
Sbjct: 90  GLNDRTINHHIRNVQRFFNWAYEEELVDR-PFK-LKQLRAVTVIPQTWSRDQLELMREYI 147

Query: 187 SEGSQP---------RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-----TQKTGTI 232
               +          R AF    Y+G+R S+       H+ +    ++       K    
Sbjct: 148 ERKLKETDSRRFIVLRRAFFLFRYTGMRASELIHLRWDHISHQGIWLESNKDWQTKGRAD 207

Query: 233 ITVELPDGFMKLLAMTPIGKETFFIN--NDKQKMN-ATQFSIWFKAKATKAGVN--KSAH 287
             + +     + L       E F  +  +  +     +     F+    + G+   K  H
Sbjct: 208 AILPVAKPLRQFLDAEAHNGEVFVCDDGSGGKFWRDYSSAGHSFQKMLDQLGLKGPKVLH 267

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           G R   AT    AG +   +      + +     Y
Sbjct: 268 GFRATVATELLAAGESPVLVQKLLRHQQLTTTLGY 302


>gi|146279751|ref|YP_001169909.1| hypothetical protein Rsph17025_3738 [Rhodobacter sphaeroides ATCC
           17025]
 gi|145557992|gb|ABP72604.1| hypothetical protein Rsph17025_3738 [Rhodobacter sphaeroides ATCC
           17025]
          Length = 384

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 54/342 (15%), Positives = 107/342 (31%), Gaps = 26/342 (7%)

Query: 17  RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSAL-----TGSTPKREYINSPRKKPTTL 71
           R G ++ Y      RRI L      T   A   A+       +           +K  T+
Sbjct: 38  RKGYVVQYRAGRRSRRISLGPTTVLTCEQARTRAITIVAAARNGQDPAAERDAGRKAITI 97

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKHTP 130
           K L   + K      L  ++   +     + I+   G      IT   +       +H P
Sbjct: 98  KELAERFDKEHIAIRLKASTGKEYRRNLQRFILPALGQLTVTGITRADVAKFHHDLRHIP 157

Query: 131 SSAIQFLTSMRVLFK----WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQF 182
             A + L  +  +F     W +R +    NP   + +   +    R  +  ++    +  
Sbjct: 158 YQANRCLEVISKMFSLSEMWGLRPD--GTNPRKHIRKYPEEKRE-RFLSAAELRRIGEVL 214

Query: 183 KSFWSEG---SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVEL 237
           +   +EG       LA   L+ +G R ++       ++  ++    +   KTG  +    
Sbjct: 215 REMEAEGVELPSAILAARLLILTGCRLNEIISLKWSYVDFDVPALRLPDSKTGAKVVHVG 274

Query: 238 PDGFMKLLAMTPIGKETFFI--NNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSAT 295
                 L     I    + I      + ++      W + +A     +   H +R   A+
Sbjct: 275 QPVVELLRDAQRIDGNPWVIAGTLPGKPLS-DLQPFWQRVRARAGVKDVRIHDLRHTFAS 333

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNS 336
            +  +G     +    G   V     Y    A+ +R+     
Sbjct: 334 TAVASGQGLPMIGKLLGHTQVQTTARYAHLAAEPVRMAADAV 375


>gi|320333098|ref|YP_004169809.1| integrase family protein [Deinococcus maricopensis DSM 21211]
 gi|319754387|gb|ADV66144.1| integrase family protein [Deinococcus maricopensis DSM 21211]
          Length = 297

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 45/273 (16%), Positives = 85/273 (31%), Gaps = 22/273 (8%)

Query: 73  WLISEYRKSAHWGSLAVNSRISF---ESYFDQIIRKSG-DFDYRKITTKHIRS---GVES 125
            L  ++         + N+   +        + + + G   D  ++T  H+R+    +  
Sbjct: 5   ALYEQFAYHLRIKRRSKNTLNFYDVSRRTLHRFLEQEGITPDTDELTVTHLRAFLVWLGD 64

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +   P        +++ +F W  R+E +  NP + +E P    E     T E M+     
Sbjct: 65  QGLGPGGIHAQARALKAVFNWGFREELLTRNPAVRLELPSLPKERQPTVTVEVMRSLLKA 124

Query: 186 WS---EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDG- 240
                   +       LL +GLR  +     ++ LQ     I+    G     V +    
Sbjct: 125 CKGTERPLRDSAIVLMLLDTGLRVHELIGLKLEDLQFERGLIRVVGKGNKERFVPVGSKA 184

Query: 241 -------FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVR 290
                    +       G    F++   + M  +  SI     A   G+     + H  R
Sbjct: 185 MSATSAYLRRERKQRHPGVPHVFLSRSGEVMTRSGISIRLAKLARSTGIEREACAPHAFR 244

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYT 323
           +  A      G     L    G  ++D    Y 
Sbjct: 245 RGFAVEFLRNGGDVFTLQQIMGHSSLDMTRRYV 277


>gi|319788864|ref|YP_004090179.1| integrase family protein [Ruminococcus albus 7]
 gi|315450731|gb|ADU24293.1| integrase family protein [Ruminococcus albus 7]
          Length = 359

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 53/292 (18%), Positives = 111/292 (38%), Gaps = 33/292 (11%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH 128
           T+K L  E+  S +   + V+++ ++ + F+  I+   GD    +IT+K +   ++++  
Sbjct: 60  TVKALCMEWL-SVNSHRVKVSTQANYMTKFEKHILPYFGDKMCYEITSKTVYGFIQAKLD 118

Query: 129 TPSSA---IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
              SA      L  ++ +FK+A ++EY  +NP  +V  PK      R  TK++ ++ K +
Sbjct: 119 EGLSAGYVSNILVLLKTVFKYA-QKEYHILNPFDNVIMPKSTKSETRLLTKKEQKKLKEY 177

Query: 186 WSEG-SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT---------- 234
                +   L     +  GLR  + C    Q +     ++  ++T   I           
Sbjct: 178 LKSNVNTATLGISLAISMGLRIGEICGLTWQDIDFKCRTLTVRRTVQRIRVKGEAKKTKI 237

Query: 235 -------------VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281
                        + +P     +L       E + +++  +          +     + G
Sbjct: 238 VILPPKSKSSFREIPIPTSVFAMLKNLRSTPEHYILSDSTEPKEPRMMYYDYVEILKELG 297

Query: 282 VN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKG-ADRIR 330
           +     H +R  +A+ + +AG     L    G   ++     Y     DR R
Sbjct: 298 LPSVKFHSLRHAAASNAIEAGFDVKTLSEVLGHSRIEMTMNLYVHSNMDRKR 349


>gi|15842437|ref|NP_337474.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis
           CDC1551]
 gi|13882740|gb|AAK47288.1| tyrosine recombinase XerC [Mycobacterium tuberculosis CDC1551]
          Length = 315

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 42/267 (15%), Positives = 90/267 (33%), Gaps = 26/267 (9%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHTPSSA---IQFLTSM 140
             +V++R ++      +     D       +T   +RS + +     ++     +  +++
Sbjct: 34  GRSVHTRRAYLGDLRSLFAFLADRGSSLDALTLSVLRSWLAATAGAGAARTTLARRTSAV 93

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS--------QP 192
           +    WAVR+  +A +P   ++ PK +        ++   +  +    G+        + 
Sbjct: 94  KAFTAWAVRRGLLAGDPAARLQVPKARRTLPAVLRQDQALRAMAAAESGAEQGDPLALRD 153

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM---- 247
           RL  E L  +G+R S+ C   V  +      ++   K     TV         L      
Sbjct: 154 RLIVELLYATGIRVSELCGLDVDDIDTGHRLVRVLGKGNKQRTVPFGQPAADALHAWLVD 213

Query: 248 ------TPIGKETFFINNDKQKMNATQFSIWFKA--KATKAGVNKSAHGVRKFSATISAD 299
                 T        +    ++++  Q          A     +   HG+R  +AT   +
Sbjct: 214 GRRALVTAESGHALLLGARGRRLDVRQARTAVHQTVAAVDGAPDMGPHGLRHSAATHLLE 273

Query: 300 AGATAHELMATYGWKTVDQAETYTKGA 326
            GA    +    G  ++   + YT  A
Sbjct: 274 GGADLRVVQELLGHSSLATTQLYTHVA 300


>gi|170017324|ref|YP_001728243.1| site-specific recombinase XerD [Leuconostoc citreum KM20]
 gi|169804181|gb|ACA82799.1| Site-specific recombinase XerD [Leuconostoc citreum KM20]
          Length = 304

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 37/278 (13%), Positives = 89/278 (32%), Gaps = 30/278 (10%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-------FDYRKITTKHIRSGVESR 126
           L  +Y +S      +  +  ++ S  D+ +               + +  +   + +  R
Sbjct: 11  LYRDYLQSER--QYSALTLKAYLSDIDEFVAFLERNGGFQTFKTVQTLDVRVYLNDLYER 68

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ-----Q 181
               +S  + ++S+R+ +++ +   +   NP  +V   K +      + + +MQ      
Sbjct: 69  HLARTSIARKISSLRMFYQFLIANHFATDNPFENVALRKHQNHLPEFFYETEMQVLFEIA 128

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVE---- 236
           +        +     E L  +G R ++     +  +       +   K      V     
Sbjct: 129 YDQKDPLWQRNAALLECLYATGARVAEIATLTLSQIDFQQRLILIHGKGNKDRYVPFGHY 188

Query: 237 --------LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--A 286
                   +     +L+A  P      F+N+  Q + A   +        ++ +      
Sbjct: 189 AQKAMQQYIAQLRPELVANCP-ENTVVFVNHRGQPITAAGITYILNTLMNRSTLTGKIHP 247

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           H +R   AT   + GA    +    G   +   + YT 
Sbjct: 248 HMLRHTFATHLLNNGADMRTVQELLGHVNLSTTQMYTH 285


>gi|168215898|ref|ZP_02641523.1| phage integrase [Clostridium perfringens NCTC 8239]
 gi|182382275|gb|EDT79754.1| phage integrase [Clostridium perfringens NCTC 8239]
          Length = 400

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 55/311 (17%), Positives = 93/311 (29%), Gaps = 51/311 (16%)

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK--SGDFDYRKITTKHIRS 121
           P     TL      +  +     L  +S   +E  +   I     G      + T HI++
Sbjct: 71  PTDDKITLSKWFYTWLFTYRIHDLKPSSFERYEGLYRNYIESSSIGKIKLMDLRTHHIQA 130

Query: 122 GVESR----KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK---RKTEGIRPW 174
              S     + +PS+       ++     A+++ Y+  N C  +  PK      E I  +
Sbjct: 131 YYNSLVSEERKSPSTIKTINKCLKSCLNQALKEGYITKNYCTLITLPKGSESPKEIINIF 190

Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSI-------- 224
           T E+ Q F       ++  + +   L +GLR  +        +  +NN   I        
Sbjct: 191 TLEEQQTFMKEC-MNNKNGMLYILALGTGLRLGEILALKWTDINFKNNYIDINKAIKSTY 249

Query: 225 --------------KTQKTGTII-TVELPDGFMKLLAMTPI--------------GKETF 255
                         +  KT   I TV L D  ++LL                        
Sbjct: 250 KIDSKGNREFQIIEQQPKTKNSIRTVPLNDNLIELLQQHRKKQMIDRDSNIEIYFDNNLV 309

Query: 256 FINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWK 314
           F       +N +     FK    K  +     H +R   AT   + G     +    G  
Sbjct: 310 FSTPIGNYLNESNVRKTFKRILNKCNLKELRFHDLRHTFATRLFENGVPPKTVQTILGHS 369

Query: 315 TVDQA-ETYTK 324
            +      YT 
Sbjct: 370 DISTTLNIYTH 380


>gi|326562807|gb|EGE13102.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis 46P47B1]
 gi|326563212|gb|EGE13480.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis 12P80B1]
 gi|326563472|gb|EGE13735.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis 103P14B1]
 gi|326573782|gb|EGE23739.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis 101P30B1]
          Length = 330

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 45/297 (15%), Positives = 106/297 (35%), Gaps = 30/297 (10%)

Query: 58  REYINSPRKKPTTLKW-LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY----- 111
               +S +  P++  W  +S +       + + ++  ++++   Q        +Y     
Sbjct: 9   APTHSSHQSDPSSPAWGYLSSWCDELRLQNYSKHTITTYQTALIQFFNFLESDNYLGGDP 68

Query: 112 ----RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167
               R+  T+   + +E  K  P SA   L+++R+ +++ ++Q  +A+NP    +     
Sbjct: 69  LACRRQDLTRFFSTRLEEEKIKPISAKLSLSAIRIFYQFLIKQGVIAVNPTTGYKIKSAP 128

Query: 168 TEGIRPWTKEDMQQFKS-FWSEGS-------QPRLAFEFLLYSGLRCSDSCRAGVQHLQN 219
            +      +  ++Q       E +       + +  FE +  SGLR S+     +  +  
Sbjct: 129 RKLPTVADELLIKQLLDQKTPEDTAKAYLWIRDKAMFELMYSSGLRLSELAGLNMGDVNF 188

Query: 220 NIFSIKTQKTGTIIT---------VELPDGFMKLLAMTPIGKETFFINND-KQKMNATQF 269
           +I  ++    G             + L D             +  FI+     +++    
Sbjct: 189 DIGIVRVLGKGNKTRQVPVGKKAMIALQDYLPHRNLWQKKNCKALFISERHGTRLSTRAI 248

Query: 270 SIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            +  K  AT AG+  +   H +R   A+    +      +    G + +   + YT 
Sbjct: 249 QLRLKVCATMAGIELNMYPHLLRHCFASHVLSSSGDLRAIQEMLGHQNISTTQIYTH 305


>gi|121595977|ref|YP_987873.1| tyrosine recombinase XerC [Acidovorax sp. JS42]
 gi|120608057|gb|ABM43797.1| tyrosine recombinase XerC [Acidovorax sp. JS42]
          Length = 323

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 44/288 (15%), Positives = 81/288 (28%), Gaps = 41/288 (14%)

Query: 77  EYRKSAH-WGSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESR---KHTP 130
           +Y +       LA  +   +     ++   +   D    ++T+ HIR  V        + 
Sbjct: 16  QYLEHVRVEKRLAARTLTLYTLDLQRLAAMAAGVDLPLLRLTSAHIRRFVAQMHAGGRSG 75

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG- 189
                 L+  R  + WA RQ  V  NP   V  PK      +    ++  +       G 
Sbjct: 76  RGIALILSGWRGFYTWAARQGLVPHNPVQDVRAPKAPKPLPKALPVDEAVRLAEHQETGA 135

Query: 190 -----SQPRLAFEFLLYSGLRCSDSCRA-------------GVQHLQNNIFSIKTQKTGT 231
                ++     E L   GLR  +                 G   LQ     +   K   
Sbjct: 136 DPWLETRDAAIVELLYGCGLRVGELVGLDVAPSPAAHQQGRGWVDLQAGEAHV-FGKGSK 194

Query: 232 IITVELPDGFMKLLAMTPIGK-------------ETFFINNDKQKMNATQFSIWFKAKAT 278
             +V +       L      +                FI     ++ A       + ++ 
Sbjct: 195 RRSVPVGRAAAAALQAWLAQRALPLGAAGAARLEPALFIGRRGARLTAQSVWSRLRQRSQ 254

Query: 279 KAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            AG+      H +R   A+    +      +    G   +   + YT+
Sbjct: 255 VAGLTTPVHPHMLRHSFASHLLQSSGDLRAVQELLGHANITTTQVYTR 302


>gi|284990526|ref|YP_003409080.1| LigA [Geodermatophilus obscurus DSM 43160]
 gi|284063771|gb|ADB74709.1| LigA [Geodermatophilus obscurus DSM 43160]
          Length = 397

 Score =  107 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 57/331 (17%), Positives = 104/331 (31%), Gaps = 45/331 (13%)

Query: 20  KIIYYFRKGHGR---RIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76
           +    +R   GR   R  +       ++    SAL   T       +P +   T+     
Sbjct: 16  RYRARYRDPGGRQHERRFVRKVDAQRWLDEATSALVTQT-----WTAPARGRVTVADWAD 70

Query: 77  EYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQ 135
            +  S     +  ++   + +     ++   G      +T   +   V       S+A  
Sbjct: 71  RWLASQ--TGVKPSTLYRYGNLLRTHVLPTWGKHQLADVTHADVAVWVAKLLGQGSAAGT 128

Query: 136 FLTSMRV---LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-SEGSQ 191
              + RV   L   AVR   +  NP   V  P+      R  T +++++      +EG  
Sbjct: 129 VRQAHRVFSLLLGLAVRDGRIPRNPAERVPLPRVIRSEPRFLTHDEVERLADAAGAEGDV 188

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQ---------------NNIFSIKTQKTGTIITVE 236
            R     L Y+GLR  +     V+ +                       T KT    TV 
Sbjct: 189 IR----LLAYTGLRFGEMAALRVRRVDFLRRRLTIAEAVTEVGGRLEFGTPKTHQQRTVP 244

Query: 237 LPDGFMKLLAM---TPIGKETFFINNDKQKMNATQFSIWFKA----KATKAGV-NKSAHG 288
           LP    + LA       G +              +   W +         AG+ + + H 
Sbjct: 245 LPATLAEPLARRCEGKQGDDLLVTTASG---TVLRLRNWRRVVFDPAVRAAGLSDVTPHD 301

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQA 319
           +R  +A+++  +GAT   +    G  +    
Sbjct: 302 LRHTAASLAVSSGATVKAVQRMLGHASAAMT 332


>gi|292491157|ref|YP_003526596.1| integrase family protein [Nitrosococcus halophilus Nc4]
 gi|291579752|gb|ADE14209.1| integrase family protein [Nitrosococcus halophilus Nc4]
          Length = 400

 Score =  107 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 46/303 (15%), Positives = 113/303 (37%), Gaps = 19/303 (6%)

Query: 57  KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKIT 115
           +R +    R+ P T+  L   Y +   +      S    E    + ++ + G    + I 
Sbjct: 87  ERIHKEEERQAP-TMAQLAELYLE--RYAKAKKRSWREDERLLKKDVLPRWGHRKAKDIV 143

Query: 116 TKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
            + + + ++    + +P  A + L  +R +F +A+ +  + +NPC +V+ P ++ +  R 
Sbjct: 144 RRDVVALLDDIIDRGSPIVANRTLACVRKMFNYALERSLIEMNPCSAVKMPGKERKRDRV 203

Query: 174 WTKEDMQQFKSFWSEG---SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQK 228
             +E+++ F     E       RLA +  L +     +  RA   H       ++I  ++
Sbjct: 204 LNEEEIRTFWHGLKEARISLPIRLALQLQLVTAQCKGELIRAEWSHFDFALGWWTISAER 263

Query: 229 TGTII--TVELPDGFMKLLAMTPIGKETFFI--NNDKQKMNATQFSIWFKAKATKAGV-N 283
           T   +   V L    ++ +         F     N ++ +  T      +      G+  
Sbjct: 264 TKNHLAHRVPLSPLALESIEGLRGFHSLFLFPSRNGEKPLLDTSIDHAVRKNLDVLGIAP 323

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK--GADRIRLGIKN-SRRIS 340
            + H +R+ +A+     G +   +              Y +       R  ++   +++ 
Sbjct: 324 FTPHDLRRTAASHMTGMGISRLVVSKILNHAESGVTAVYDRHSYDSEKRHALEAWGKKLE 383

Query: 341 SVV 343
           +++
Sbjct: 384 AII 386


>gi|237742399|ref|ZP_04572880.1| DNA integration/recombination/invertion protein [Fusobacterium sp.
           4_1_13]
 gi|229430047|gb|EEO40259.1| DNA integration/recombination/invertion protein [Fusobacterium sp.
           4_1_13]
          Length = 416

 Score =  107 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 61/391 (15%), Positives = 127/391 (32%), Gaps = 74/391 (18%)

Query: 10  FVTKERTRHGKIIY----YFRKGHGRRIRLPYPHEST-----------FIPAYMSALTGS 54
           + T    + G+  +    Y +K   R+  L    +S            F+   M  L   
Sbjct: 13  YTTSYTRKKGRFYHVVFEYVKKKGTRKKSLSRTTKSEDEEVANRMLDDFVIECMKILNID 72

Query: 55  TPKREYINSPR---------KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIR 104
              +    +               +    I  Y K+    ++  ++   +ES     +I 
Sbjct: 73  KKYKPKNRNKIIFNKDLNLYNTEISFCDFICGYIKTRR-KTIEDDTYSGYESIARCSLIP 131

Query: 105 KS--GDFDYRKITTKHIRSG----VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158
                +   ++I    I       +  R  +P++ + +   + ++FK+A+R + +  NP 
Sbjct: 132 YFYRENKKLKEIEDFDIEKYYYHELNYRNISPNTVLHYHYLLSLVFKYALRHKIITRNPL 191

Query: 159 LSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL--YSGLRCSDSCRAGVQ- 215
            SVE+PK+K      +  E++           +  L F  L+  Y GLR S+        
Sbjct: 192 DSVEKPKKKKYVAEVYNAEEINILLDLLKR-EEENLYFGVLMAAYFGLRRSEVIGLKWSS 250

Query: 216 -----------------HLQNNIFSIKTQKTGTI-------ITVELPDGFMKLLAMTP-- 249
                            ++      +   KT +        + +E+ +  +++       
Sbjct: 251 INFEENTITIMSTVKETNIDGKHIFVCQDKTKSPAGLRSFSLPIEIKELLLEIKEKQEEN 310

Query: 250 ----------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISA 298
                       KE  ++++  +++     +  F     K  +     H +R   ATI  
Sbjct: 311 KKYLGKGYYMEDKEYIYVDDGGKRLRPNYLTTRFGKFLKKFNLKHIRFHDLRHSCATILY 370

Query: 299 DAGATAHELMATYGWKTVDQA-ETYTKGADR 328
           D  A   E+    G  +V    E Y    +R
Sbjct: 371 DNNAGIKEIQTYLGHSSVKTTMEIYVHLMNR 401


>gi|221065123|ref|ZP_03541228.1| integrase family protein [Comamonas testosteroni KF-1]
 gi|220710146|gb|EED65514.1| integrase family protein [Comamonas testosteroni KF-1]
          Length = 348

 Score =  107 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 49/320 (15%), Positives = 97/320 (30%), Gaps = 47/320 (14%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQI--IRKSGDFDYRKITTKHIR---SGVESRK 127
           ++  Y +       LA  +   +     ++  + ++ D +   +   HIR   + + S  
Sbjct: 19  VVHSYLEHVRVQKRLADRTHTLYALDLIKLQSLAQAADQELLTLQPAHIRRFAAQMHSAG 78

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            +       L+  R  F+WA ++E V  NP   V  PK      +    +D  Q  SF  
Sbjct: 79  RSARGIALILSGWRSFFRWAAQRELVPFNPVEGVRGPKAAKPLPKALAVDDAVQLASFQI 138

Query: 188 ------EGSQPRLAFEFLLYSGLRCSDSCRA-------------GVQHLQNNIFSIKTQK 228
                   ++     E L   GLR ++                 G   L+     +   K
Sbjct: 139 PDADPWIEARDVAMTELLYSCGLRVAELVGLDLRPDQQSLQQGRGWIDLEAGDAHV-QGK 197

Query: 229 TGTIITVELPDGFMKLLAM---------------TPIGKETFFINNDKQKMNATQFSIWF 273
                 V +    ++ L                     +   FI    +++         
Sbjct: 198 GSKRRIVPVGRMAIEALQRWLALRSSALTGAAQFKAQDETALFIGRRGERLGGHSVWSRL 257

Query: 274 KAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           K +  +AG+      H +R   A+    +      +    G  ++   + YT+  D   L
Sbjct: 258 KQRGQRAGLASGVHPHVLRHSFASHMLQSSGDLRAVQELLGHASIATTQIYTR-LDFQHL 316

Query: 332 GIKNSR---RISSVVDSDDP 348
                +   R      ++ P
Sbjct: 317 AQAYEKAHPRAQRSSAAEKP 336


>gi|115352465|ref|YP_774304.1| phage integrase family protein [Burkholderia ambifaria AMMD]
 gi|115282453|gb|ABI87970.1| phage integrase family protein [Burkholderia ambifaria AMMD]
          Length = 358

 Score =  107 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 59/343 (17%), Positives = 112/343 (32%), Gaps = 39/343 (11%)

Query: 17  RHGKIIY-YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75
           R GK+ +  F+    R+ R     +     A   A       + +    ++ P TL+ L+
Sbjct: 7   RVGKVWHCRFQINGTRQQRSTRETDRQ--RAEQVAEAAVRQAKLWTRDSKELP-TLRELV 63

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI----------TTKHIRSGVES 125
            +      W  +  ++     ++  +++   G      +                     
Sbjct: 64  RQ------WLVVHESTAS--RAHV-KVVETFGRLHLYDLADVLIDELSTDRVEFARVRHL 114

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
             H P SA Q+L  +R+L  WAVR+  +A  P   V   K + +          + +   
Sbjct: 115 ESHAPVSANQWLKVLRLLCNWAVRRGILAAVPFR-VRALKVQKKPRAILPVAMARAWLDA 173

Query: 186 WSEG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII--TVELPD 239
              G    +  R A   +L  GLR S++  A  + L     +    +T       + +P 
Sbjct: 174 IDAGEGNRAGVRTAVRLMLGLGLRESETITARWEWLDVGRQTYTPGRTKGREADPIPVPA 233

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA--GVNKSAHGVRKFSATIS 297
             +  L              +        F+      A +A    + +AH +R   AT+ 
Sbjct: 234 WLIDYLMADWKAAGPILQKANGCPY-PAGFTRSAMLAANRAVGAPHITAHRLRGTFATLL 292

Query: 298 ADAGATAHELMATYGWKTVDQAETY------TKGADRIRLGIK 334
           ++AG     +      K +     Y      T  A + R+  K
Sbjct: 293 SEAGVPVQSIQRALRHKNLTTTAAYLEVDMGTVAAGQQRIAEK 335


>gi|308271817|emb|CBX28425.1| hypothetical protein N47_G37490 [uncultured Desulfobacterium sp.]
          Length = 392

 Score =  107 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 51/356 (14%), Positives = 100/356 (28%), Gaps = 34/356 (9%)

Query: 16  TRHGKIIYY--FRKGHGRRIRLPYPHESTFIPAYMSA--LTGSTPKREYINSPRKKPTTL 71
            + G++ Y+  +R   GR++R       +      +     G   +   ++   +   T 
Sbjct: 31  KKSGRVRYWVSYRLPGGRQVRRIEGGGYSLKDTLAAEGKTKGLKVENRILDIKPEAKMTF 90

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
             L   Y        LA       +   +   +  GD    ++    + +    RK    
Sbjct: 91  NQLTKWYLDLERVKMLARY--PILKINLNSFNQVFGDTIVNQLKPADLENYQAKRKAQGQ 148

Query: 132 S---AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG-----IRPWTKEDMQQFK 183
           +     Q +   R +   A   + V+ +     +R K+  +G      R  + E+  +  
Sbjct: 149 ADAYVDQQIAMARAMINKAFDNDIVSGDTIKVFKRVKKLLKGSSNTRDRVLSAEEFDKLM 208

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ----KTGTIITVELPD 239
           +     S  +       Y G+R  +        +      I+      K      V + D
Sbjct: 209 NALP--SHAKAIVATGYYGGMRKGEVVNLTWDKVDMKGRVIRLGANDTKDREARQVPICD 266

Query: 240 GFMKLLAMTPIG--KETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--------AHGV 289
               +L   P        F+    + +         +     AG+            H  
Sbjct: 267 ALYDILEEIPRAINDNHVFLFK-GKPI--KNLRTALRKACRVAGIPYGRGTKDGFVFHDT 323

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETY-TKGADRIRLGIKNSRRISSVVD 344
           R    T    +G     +M   G  T +    Y T  A   R  +         VD
Sbjct: 324 RHCFNTNMRKSGVPESVIMKITGHSTREMFLRYDTVDATDTRKAVDQMEGFLKSVD 379


>gi|295086221|emb|CBK67744.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A]
          Length = 213

 Score =  107 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 40/216 (18%), Positives = 74/216 (34%), Gaps = 15/216 (6%)

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
             S+A   L  ++ + + A   + +  N    ++  K  +      T +++++       
Sbjct: 2   MASTANNNLNKLKCVLRLAYEDKRIKENIAPRLKHAKEASTRREFLTLDEVKKLAHTPCG 61

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNI-FSIKTQKTGTIITVELPDGFMK 243
               + A  F   +GLR SD  R   +++           I T+KT T   + L D  + 
Sbjct: 62  KPVVKSAALFSCLTGLRISDIIRLQWENIIRGADGGWCMHIVTKKTRTEAVLPLSDEALA 121

Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301
           L      G+   F     + M      ++ K     AG+ K  + H  R   AT+   AG
Sbjct: 122 LCGERSTGQ--VF-----KGMTQALLPLYLKDWIKSAGITKHITFHCFRHTYATLQLAAG 174

Query: 302 ATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNS 336
              + +        V   + Y     D  R   +  
Sbjct: 175 TDLYTISKMLTHSNVATTQVYADVVNDLKRKASEQI 210


>gi|62185317|ref|YP_220102.1| site-specific tyrosine recombinase XerD [Chlamydophila abortus
           S26/3]
 gi|62148384|emb|CAH64151.1| putative site-specific recombinase [Chlamydophila abortus S26/3]
          Length = 299

 Score =  107 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 36/227 (15%), Positives = 73/227 (32%), Gaps = 22/227 (9%)

Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
               +  RK   ++  + L +++V F++    + +   P   +E PK         T ++
Sbjct: 59  FVRQLHKRKEAEATLARRLIALKVFFRFLKEAKLLEHPP--LIEHPKIWKRLPTVLTPQE 116

Query: 179 MQQFKSFWS-------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
           +    +            ++       L  +G+R S+ C   +  + ++   + T K   
Sbjct: 117 VDALLAIPKKTPTSSLISTRDTAILHTLYSTGIRVSELCGLHIGDVSDDFLRV-TGKGSK 175

Query: 232 IITVELPD-----------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280
              V L              F + L      +   F++    K+  +         A + 
Sbjct: 176 TRLVPLGKLASAAIDAYLCPFRENLQKKQSEEHHLFLSIRGHKLERSCVWKRIHYYAKQV 235

Query: 281 GVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
              + S H +R   AT   D  A    +    G   +   E YT  A
Sbjct: 236 THKRVSPHSLRHAFATHLLDNKADLRVIQEMLGHARIASTEVYTHVA 282


>gi|319407841|emb|CBI81494.1| integrase/recombinase XerD [Bartonella sp. 1-1C]
          Length = 312

 Score =  107 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 43/286 (15%), Positives = 98/286 (34%), Gaps = 33/286 (11%)

Query: 72  KWLISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVES 125
             +I  + +  +     +V + ++++        K         + +      + S ++ 
Sbjct: 4   DAVIDHFLEMMSAERGASVCTLLAYQHDLQWAQNKLSSHSISFFSAQREDLINLLSLMQK 63

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
                +S  + L+++R  F++   +     +P   ++ P++     +  +++ + +   F
Sbjct: 64  AGCAATSQARRLSTLRQFFQFLYAEGLREDDPSSDIDSPRQGRPLPKIISEDAVTKLLDF 123

Query: 186 WSEGSQP--------------RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
               ++               ++  E L  +GLR S+     VQ ++     I  +  G 
Sbjct: 124 AQLETEQAESGTQNYYRALRFQVLLEMLYATGLRISELVSLPVQAVRGKEQFILVRGKGE 183

Query: 232 IITVELPDG-----FMKLLAMTPIGKET----FFINNDKQKMNATQFSIW-FKAKATKAG 281
              V L         ++ L++    K+      F         A QF     K  A +AG
Sbjct: 184 KERVVLLSEKARQILLQWLSVRDQRKDATSIYLFPARSSTGYIARQFVARGLKDLAKRAG 243

Query: 282 V---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +   N S H +R   A+     GA    +    G   +   + YT 
Sbjct: 244 IQSENFSPHVLRHAFASHLLQNGADLRAVQHLLGHCDISTTQIYTH 289


>gi|58616838|ref|YP_196037.1| tyrosine recombinase xerD [Ehrlichia ruminantium str. Gardel]
 gi|58416450|emb|CAI27563.1| Tyrosine recombinase xerD [Ehrlichia ruminantium str. Gardel]
          Length = 312

 Score =  107 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 42/273 (15%), Positives = 95/273 (34%), Gaps = 33/273 (12%)

Query: 90  NSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVESRKHTPSSAIQFLTSMRVLF 144
           N+  S+ S    + +     +   I       K     +  R++  S+  + +++++ L+
Sbjct: 24  NTYQSYMSDLLDLCKFFDCKNLPLIEVSRDDLKDYVRLMHKREYKSSTISRKISAIKNLY 83

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-----SEGSQPRLAFEFL 199
           K+  +   +A +P LS++ P+      +    E++ +           +G +       L
Sbjct: 84  KFFCKDNIIAYDPALSLDFPRLSRALPKALNIEEVSRLLDTAALDSSPDGLRTNAIINIL 143

Query: 200 LYSGLRCSDSCRAGV---------QHLQNNIFSIKTQKTGTIIT-------VELPDGFMK 243
             SG+R S+     +          +++ +  +I+ +     I        V +      
Sbjct: 144 YSSGIRVSELIYLKLNSIKEALNNDNIEISYITIRGKANRERIVLLNSSAIVSIQKYLEV 203

Query: 244 LLAMTPIGKE----TFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATI 296
            +   P G E     F        +   +     K  +  AGV+    S H +R   AT 
Sbjct: 204 YMHFVPNGYEISQWLFPGTKFDNPITRQRIGQLLKDLSISAGVDMTRISPHKLRHSFATH 263

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             + G+    +    G  ++   + YT  A+  
Sbjct: 264 LLNNGSDIIFIQKMLGHTSLSTTQIYTYVANEK 296


>gi|296163572|ref|ZP_06846310.1| integrase family protein [Burkholderia sp. Ch1-1]
 gi|295886175|gb|EFG66055.1| integrase family protein [Burkholderia sp. Ch1-1]
          Length = 399

 Score =  107 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 55/322 (17%), Positives = 110/322 (34%), Gaps = 31/322 (9%)

Query: 45  PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-II 103
             +++ +          N+ RK P T+K     + +         +++  ++   D+ II
Sbjct: 75  QEWLAEVRKGGDPSAAKNAARKAP-TMKEFCHTFMEDYSKQRNKPSTQRGYQGVIDRCII 133

Query: 104 RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA--INPCLSV 161
              G    + +    + + ++   +  + A +    +R +F  A          NPC  V
Sbjct: 134 PNMGRMKVQDVKRPDVAALMKKLAYKRAEANRTFGVLRKMFNLAEVWGLRPDGTNPCRHV 193

Query: 162 ERPKRKTEGIRPWTKEDM----QQFKSFWSEGSQPR---LAFEFLLYSGLRCSDSCRAGV 214
                  +  R    +++    +Q +   +EG +     LA         R S+ C    
Sbjct: 194 PM-YPPGKETRLIVDDELVRIFRQLEHLEAEGLENYVIPLAIRLQFEFAARRSEICPLEW 252

Query: 215 QHLQNN--IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI----NNDKQKMNA-T 267
             +            KTG  I+  + +   +LL+  P  + + ++    N+  + M    
Sbjct: 253 DWIDLEKRRVVWPDSKTGG-ISKPMSEEAYRLLSTAPRREGSPYVLPSPNDPTRHMTYGE 311

Query: 268 QFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           Q+  W +        +   HG+R  + T  A++G      M   G KTV     Y    D
Sbjct: 312 QYGGWTRVLKAAGVPHVGTHGIRHRATTDIANSGVPTKVGMKLTGHKTVAMFMHYVHTED 371

Query: 328 R-----------IRLGIKNSRR 338
           +            RL I  + R
Sbjct: 372 KPVRDAAELVASRRLAITGASR 393


>gi|255534430|ref|YP_003094801.1| Integrase, site-specific recombinase [Flavobacteriaceae bacterium
           3519-10]
 gi|255340626|gb|ACU06739.1| Integrase, site-specific recombinase [Flavobacteriaceae bacterium
           3519-10]
          Length = 296

 Score =  107 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 42/262 (16%), Positives = 97/262 (37%), Gaps = 25/262 (9%)

Query: 85  GSLAVNSRISFESYFDQ----IIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFL 137
              + ++  S+    +     ++R     +Y ++  K IR+ + +         S  + L
Sbjct: 13  KRYSPHTLTSYRRDLEDFSVFLLRTEAHHNYVEVDKKIIRNFMAALGEKAIAKRSINRKL 72

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPR 193
           +++R  + + ++   V  +P  +++  K   E   P++ ++M   +              
Sbjct: 73  STLRSFYLFLLKIGEVKTSPLANIQTLKFYAEKQVPFSPDEMNDLQKEEFQPLKTNFLKE 132

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGF-------MKLL 245
           L  E L  +G+R ++     + H+      +K T K      V + D         ++  
Sbjct: 133 LIIETLYQTGMRRAELTGLLLDHVDLGKKELKITGKGNKQRIVPVSDDLCAQLEQYLEFR 192

Query: 246 AMTPIGKETFFINNDKQK----MNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAG 301
                 +  FF++   +K       +  + +     +K    KS H +R   AT   + G
Sbjct: 193 KPLKEYQMYFFVSAKGKKLNDKFVYSAVNTYLSLVTSKK--KKSPHILRHSFATHVLEEG 250

Query: 302 ATAHELMATYGWKTVDQAETYT 323
           A   ++    G K++   + YT
Sbjct: 251 AEISKVKLLMGHKSLASTQVYT 272


>gi|120597821|ref|YP_962395.1| phage integrase family protein [Shewanella sp. W3-18-1]
 gi|120598661|ref|YP_963235.1| phage integrase family protein [Shewanella sp. W3-18-1]
 gi|120557914|gb|ABM23841.1| phage integrase family protein [Shewanella sp. W3-18-1]
 gi|120558754|gb|ABM24681.1| phage integrase family protein [Shewanella sp. W3-18-1]
          Length = 287

 Score =  107 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 43/269 (15%), Positives = 93/269 (34%), Gaps = 25/269 (9%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----SRK 127
             L+ ++         +  +R ++     Q+ ++  +     IT + + +        R 
Sbjct: 2   SSLLQQFHDEISLRGYSARTRNAYLYAITQL-QQYANQPLDNITDEQLTAYFRYLNLERH 60

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           H+ ++    L  +   ++  +++++      + +  PKR  +  +  + +D+     +  
Sbjct: 61  HSRATLKLQLNGIHFFYEHVLKRDF-----TIQLSLPKRPHKLPQLLSCQDIAALL-YHC 114

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLL 245
           +  + R         GLR S+     V  +      +K    K      V +    + LL
Sbjct: 115 QSLKQRAMLALCYGCGLRVSELTHIKVADIDGQRQLLKVCQGKGACDRWVIISPTLLTLL 174

Query: 246 AMT-----PIGKETFFINNDK---QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSAT 295
                   P+  E  F +        ++ + F       A  AG+    S H +R   AT
Sbjct: 175 RQYWQAYHPV--EWLFASTYHDVVYPLHESTFRKALAKAARLAGITKPCSPHSLRHAYAT 232

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTK 324
               AG   H+L A  G  ++   E Y  
Sbjct: 233 HQLQAGMPLHQLQAQLGHHSIKSTERYLH 261


>gi|83592556|ref|YP_426308.1| site-specific tyrosine recombinase XerC [Rhodospirillum rubrum ATCC
           11170]
 gi|83575470|gb|ABC22021.1| tyrosine recombinase XerC subunit [Rhodospirillum rubrum ATCC
           11170]
          Length = 330

 Score =  107 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 47/278 (16%), Positives = 88/278 (31%), Gaps = 28/278 (10%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESR 126
           L WL  E R S H             ++   +    G+         +     R+ + +R
Sbjct: 39  LGWLQGERRASRHTLD---AYGRDLAAFLTFLRDYRGEEPGLATLASLGPADFRAYMAAR 95

Query: 127 K----HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
                  PS A + L+++R LF+W  R+  +      ++  P++     +  ++ +    
Sbjct: 96  LTQGLSRPSMA-RALSTLRNLFRWLDREGVLRNGAIATIRSPRQPQAVPKALSESEALDA 154

Query: 183 KSFWS-------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
            S  S          +    F  L   GLR  ++       L +      T K      V
Sbjct: 155 LSVASDLQDDPWLAKRDLALFTLLYGCGLRLGEALDLDRGDLPSGEVMRITGKGRKERLV 214

Query: 236 ELPD----GFMKLLAMTP---IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSA 286
            L           LA  P      +  F+ +  +++N        +      G+    + 
Sbjct: 215 PLLPVVVEALADYLAACPFAGGPDDPLFLGSRGKRLNPGVVQRQMRRLRGFLGLPETATP 274

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           H +R   AT     G     +    G  ++   + YTK
Sbjct: 275 HALRHSFATHLLAQGGDLRTIQELLGHASLSTTQRYTK 312


>gi|42526683|ref|NP_971781.1| phage integrase family site specific recombinase [Treponema
           denticola ATCC 35405]
 gi|41816876|gb|AAS11662.1| site-specific recombinase, phage integrase family [Treponema
           denticola ATCC 35405]
          Length = 354

 Score =  107 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 48/256 (18%), Positives = 91/256 (35%), Gaps = 20/256 (7%)

Query: 92  RISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH----TPSSAIQFLTSMRVLFKWA 147
           +         I + S       +T     +  ++ +     +P +   +  S+R LFK A
Sbjct: 87  KHPLHKVVLWIEKISPTLKMDALTPTWFENFQQTLQRETELSPYTCENYACSLRTLFKKA 146

Query: 148 VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS---EGSQPRLAFEFLLYSGL 204
           VR   +  +P + V+              ED+++  +       G+  + AF F   +GL
Sbjct: 147 VRDGVLVKDPTIGVKHIHCPESIKEFLMPEDIRKLAAEPIGGILGADVKKAFLFACCTGL 206

Query: 205 RCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKLLAMTP------IGKETFF 256
           R SD        +  +    +   QKT   + + + D  +  L +          ++  F
Sbjct: 207 RISDLKSLKWGGVSFEKKTLTKIQQKTKRAVYLPIKDEAIAFLHLLAEENPNRTDEDFIF 266

Query: 257 INNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWK 314
            +      N  Q+ I       +AGV      H  R   AT+  ++GA  + +    G  
Sbjct: 267 PHVATTGTNMNQYLI---EWGKRAGVRQKIGWHLARHTHATLLLESGADLYTVQKLLGHT 323

Query: 315 TVDQAETYTKGADRIR 330
            +     YT+  DR +
Sbjct: 324 KISTTAQYTQVTDRKK 339


>gi|114571348|ref|YP_758028.1| phage integrase family protein [Maricaulis maris MCS10]
 gi|114341810|gb|ABI67090.1| phage integrase family protein [Maricaulis maris MCS10]
          Length = 311

 Score =  107 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 40/275 (14%), Positives = 85/275 (30%), Gaps = 30/275 (10%)

Query: 85  GSLAVNSRISFESYFDQ----IIRKSGDFD----YRKITTKHIRSGVESRKH---TPSSA 133
             L+  +  +++   D     +    G          ++++  R+ + SR+    +  S 
Sbjct: 25  RRLSPRTLDAYQRDLDNFGAFLCEHHGRLPDLMTLGDLSSRDFRAYMASRRRDGLSARSL 84

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLS-VERPKRKTEGIRPWTKEDMQQFKSFWSEG--- 189
            + L+++R  F +A R+ +   N  LS VE PK      +P ++   +   +        
Sbjct: 85  ARALSAIRTFFDYAKRR-WGVDNAALSLVESPKLLRSAPKPVSESAAKSLLAETGARGGP 143

Query: 190 ----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
               ++       L   GLR S++       L          K      V +     + +
Sbjct: 144 DWVSARDNAVLLLLYGCGLRISEALSLTGNDLPIGDTLRIAGKGNKTRIVPVLPAVAEAI 203

Query: 246 -------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATI 296
                            F       ++A       +    + G+    + H +R   AT 
Sbjct: 204 SQYVALCPFATKDDAALFRGVRGGNLSARSVQALMQELRGRLGLPETATPHALRHAFATH 263

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
               G     +    G  ++   + Y    +  RL
Sbjct: 264 LLAHGGDLRAIQELLGHASLSTTQIYA-DVESARL 297


>gi|259909812|ref|YP_002650168.1| site-specific tyrosine recombinase XerC [Erwinia pyrifoliae Ep1/96]
 gi|224965434|emb|CAX56966.1| site-specific tyrosine recombinase [Erwinia pyrifoliae Ep1/96]
          Length = 351

 Score =  107 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 44/289 (15%), Positives = 99/289 (34%), Gaps = 32/289 (11%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFE---SYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
           TL+ L   +         +  +   +      F       G     +++   + +     
Sbjct: 20  TLRQLAESWLAHLVVAGRSPRTVQGYRERVRAFLAWCEPRGITYAPQVSLAVLEAYQRWL 79

Query: 127 KHTPSSAIQ---------FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI-RPWTK 176
           +    +  +          LT++R+LF+W +++  +  NP   +  PK +     + +++
Sbjct: 80  QGYRRADGKQLVVNSQLGVLTAIRMLFRWLLQRHVILYNPAELLALPKEERRLPAQVFSE 139

Query: 177 ED----MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTG 230
            +    +Q   +    G + R   E L  SG+R S+     +  +     + +++  K G
Sbjct: 140 AETRRVLQSLDAGTPPGLRNRAILELLWSSGIRRSELAGLLLSDVDFTRGVVNVRRGKGG 199

Query: 231 TIITVEL----PDGFMKLLA------MTPIGKETFFINNDKQKMNATQFSIWF-KAKATK 279
               V +         + L                FI++    +     +    +A    
Sbjct: 200 KDRVVPVGHTALMWLGRYLKDVRPRLAQRFDSGHLFISHKGTGLAHGTLTAMAGRAIREG 259

Query: 280 AGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           A + K+   H  R   AT   + GA    + A  G + ++  + YT+ A
Sbjct: 260 AHLKKAGACHIFRHSMATQMLENGADTRHIQAILGHEKLETTQIYTRVA 308


>gi|213158313|ref|YP_002320364.1| tyrosine recombinase XerC [Acinetobacter baumannii AB0057]
 gi|215482572|ref|YP_002324764.1| Tyrosine recombinase xerC [Acinetobacter baumannii AB307-0294]
 gi|294837791|ref|ZP_06782474.1| site-specific tyrosine recombinase [Acinetobacter sp. 6013113]
 gi|301594795|ref|ZP_07239803.1| site-specific tyrosine recombinase [Acinetobacter baumannii AB059]
 gi|213057473|gb|ACJ42375.1| tyrosine recombinase XerC [Acinetobacter baumannii AB0057]
 gi|213986400|gb|ACJ56699.1| Tyrosine recombinase xerC [Acinetobacter baumannii AB307-0294]
          Length = 304

 Score =  107 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 49/279 (17%), Positives = 98/279 (35%), Gaps = 27/279 (9%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVESR---- 126
            L+S + K     + + ++  ++E      +   +    D R +    +R  +  R    
Sbjct: 6   QLLSMWLKERKIQNQSEHTITAYERDVRSFLEFCELKKVDLRNVEASDLREYLAQRVEQD 65

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
           + + SS  + LTS+R   KWA + +Y+ INP    +  ++          E + Q     
Sbjct: 66  QLSSSSMQRHLTSIRQFMKWAEQGKYLEINPTDDFKLKRQPRPLPGMIDIETVNQILDQP 125

Query: 187 SEG--------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV--- 235
                       + +   E L  SGLR ++     ++ +  N   ++    G    +   
Sbjct: 126 MPEKPIDQQLWLRDKAMLELLYSSGLRLAELQGLTIKDIDFNRQLVRITGKGNKTRIVPF 185

Query: 236 --ELPDGFMKLLAMTPIGKETF------FINNDKQKMNATQFSIWFKAKATKAGV--NKS 285
             +  +  +  L +  I K  F      FI+     +   Q     K +A +AGV  +  
Sbjct: 186 GKKAKESLLNWLKIYNIWKGHFDQNASVFISQRGGALTPRQIEKRVKLQAQRAGVNVDLH 245

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            H +R   A+    +      +    G   +   + YT 
Sbjct: 246 PHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTH 284


>gi|305664395|ref|YP_003860682.1| putative site-specific recombinase [Maribacter sp. HTCC2170]
 gi|88708412|gb|EAR00648.1| putative site-specific recombinase [Maribacter sp. HTCC2170]
          Length = 297

 Score =  107 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 44/211 (20%), Positives = 77/211 (36%), Gaps = 17/211 (8%)

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS--- 187
            S  + + S++  +K+  R   + INP    +  K   +   P+++E+MQ+         
Sbjct: 67  RSVNRKIASLKAYYKFLQRVGSININPLAKHKALKTSKKIEVPFSEEEMQRILLQLPFED 126

Query: 188 --EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKL 244
             EGS+ +L  E L  +G+R S+        +  N  S+K   K      V L    + L
Sbjct: 127 DFEGSRDKLIIELLYTTGIRRSELINLRTNSVDLNQRSMKVLGKRNKERIVPLLLPTIDL 186

Query: 245 LAMT---------PIGKETFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSAHGVRKFS 293
                            E  F+     K+  T      K       + V +S H +R   
Sbjct: 187 FEAYFRYRKELENITHDEYIFLTISGNKIYETLVYRIIKGYFSKVSSKVKRSPHILRHTF 246

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324
           AT   + GA  + +    G  ++   + YT 
Sbjct: 247 ATHLLNKGADLNSVKELLGHSSLASTQVYTH 277


>gi|269219629|ref|ZP_06163483.1| integrase/recombinase XerC [Actinomyces sp. oral taxon 848 str.
           F0332]
 gi|269210871|gb|EEZ77211.1| integrase/recombinase XerC [Actinomyces sp. oral taxon 848 str.
           F0332]
          Length = 303

 Score =  107 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 46/289 (15%), Positives = 92/289 (31%), Gaps = 30/289 (10%)

Query: 75  ISEYRKSAHWGS-LAVNSRISF----ESYFDQIIRKSG-----DFDYRKITTKHIRSGVE 124
           +  Y +       L+ N+  ++     S  + I   +G       D R +    +R+ + 
Sbjct: 7   LDAYERELRLRRGLSENTVAAYVREARSLLEFIWEIAGGDVEEPMDLRGLELADVRAWLA 66

Query: 125 S---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
               +  + S+  +   S+R   +W  R+ +  ++    ++ P+      R   +E  ++
Sbjct: 67  RSQAKGRSRSTLARHSASIRTFCRWLHRKGHTDVDAAARLKAPRADNALPRVLNQEQARR 126

Query: 182 FKSFW--------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233
                            +   A E L  SG+R  + C   V  L  +       K     
Sbjct: 127 LAEHAGRLAASGDPLALRDHAAVELLYASGIRIGELCSLDVDSLGADSTLRVIGKGDKER 186

Query: 234 TVELP-DGFMKLLAMTPIGKE-------TFFINNDKQKMNATQFSIWFKAKATKAGV-NK 284
            V         L A  P   +         F+     +++           A  AGV + 
Sbjct: 187 IVPFGVPARRALTAYLPARAQLLVRPNRALFLGARGGRLDPRTLRKTIHRLAASAGVPDI 246

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           S H +R  +AT   D G+    +    G  ++   + YT  +       
Sbjct: 247 SPHDLRHSAATHLLDGGSDLRTVQEILGHASLGTTQRYTHVSSERLRAA 295


>gi|260556505|ref|ZP_05828723.1| tyrosine recombinase XerC [Acinetobacter baumannii ATCC 19606]
 gi|260409764|gb|EEX03064.1| tyrosine recombinase XerC [Acinetobacter baumannii ATCC 19606]
          Length = 308

 Score =  107 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 49/279 (17%), Positives = 98/279 (35%), Gaps = 27/279 (9%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVESR---- 126
            L+S + K     + + ++  ++E      +   +    D R +    +R  +  R    
Sbjct: 10  QLLSMWLKERKIQNQSEHTITAYERDVKSFLEFCELKKVDLRNVEASDLREYLAQRVEQD 69

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
           + + SS  + LTS+R   KWA + +Y+ INP    +  ++          E + Q     
Sbjct: 70  QLSSSSMQRHLTSIRQFMKWAEQGKYLEINPTDDFKLKRQPRPLPGMIDIETVNQILDQP 129

Query: 187 SEG--------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV--- 235
                       + +   E L  SGLR ++     ++ +  N   ++    G    +   
Sbjct: 130 MPEKPIDQQLWLRDKAMLELLYSSGLRLAELQGLTIKDIDFNRQLVRITGKGNKTRIVPF 189

Query: 236 --ELPDGFMKLLAMTPIGKETF------FINNDKQKMNATQFSIWFKAKATKAGV--NKS 285
             +  +  +  L +  I K  F      FI+     +   Q     K +A +AGV  +  
Sbjct: 190 GKKAKESLLNWLKIYNIWKGHFDQNAPVFISQRGGALTPRQIEKRVKLQAQRAGVNVDLH 249

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            H +R   A+    +      +    G   +   + YT 
Sbjct: 250 PHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTH 288


>gi|218442606|ref|YP_002380927.1| integrase [Cyanothece sp. PCC 7424]
 gi|218175377|gb|ACK74108.1| integrase family protein [Cyanothece sp. PCC 7424]
          Length = 329

 Score =  107 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 47/282 (16%), Positives = 97/282 (34%), Gaps = 38/282 (13%)

Query: 85  GSLAVNSRISFESYFDQIIR-----KSGDFDYRKITTKHIRSGV-ESRKHTPSSAIQFLT 138
           G+ + ++  ++ ++  Q  +     +       ++  K+ R  + E   + P++    LT
Sbjct: 35  GNASDDTLKTYIAHIKQFFKWCRHNRLDPLHLNRLQIKNYRHYLVERMNYKPATIALKLT 94

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP---WTKEDMQQFKSFWS-----EGS 190
           ++R  +  A+    ++ NP L ++ P  K +         + ++ Q  +           
Sbjct: 95  TVRRFYDCAISYGLISFNPALGIKPPVEKRDPAERINYLERAEVAQLLASLPTDDSVASL 154

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKLL--- 245
           + R     ++  G R  +  R  +  +  Q N   ++     +I  V L      LL   
Sbjct: 155 RERTLIGIMVLQGCRTVEMHRLKMHDIIRQGNNVGLRVSGKRSIRVVPLTPDLALLLDKY 214

Query: 246 --AMTPIGKET-----FFIN----NDKQKMNATQFS-------IWFKAKATKAGVNKSAH 287
             A T  G         FI+    N  + ++              FK   T A    + H
Sbjct: 215 LAARTAAGDRLNDNTPIFISLSNANYGEPLSRRSIQRIVQKHLQAFKQTGTNA-RKLTTH 273

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            +R  + T++   GA   ++    G         Y   ADR 
Sbjct: 274 SLRHTAGTLALRTGAELRQVQDMLGHADPRTTALYAHIADRW 315


>gi|222112165|ref|YP_002554429.1| tyrosine recombinase xerc [Acidovorax ebreus TPSY]
 gi|221731609|gb|ACM34429.1| tyrosine recombinase XerC [Acidovorax ebreus TPSY]
          Length = 323

 Score =  107 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 44/288 (15%), Positives = 82/288 (28%), Gaps = 41/288 (14%)

Query: 77  EYRKSAH-WGSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESR---KHTP 130
           +Y +       LA  +   +     ++   +   D    ++T+ HIR  V        + 
Sbjct: 16  QYLEHVRVEKRLAARTLTLYTLDLQRLAAMAAGVDLPLLRLTSAHIRRFVAQMHAGGRSG 75

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG- 189
                 L+  R  + WA RQ  V  NP   V  PK      +    ++  +       G 
Sbjct: 76  RGIALILSGWRGFYTWAARQGLVPHNPVQDVRAPKAPKPLPKALPVDEAVRLAEHQETGA 135

Query: 190 -----SQPRLAFEFLLYSGLRCSDSCRA-------------GVQHLQNNIFSIKTQKTGT 231
                ++     E L   GLR  +                 G   LQ     +   K   
Sbjct: 136 DPWLEARDAAIVELLYGCGLRVGELVGLDVAPSPAAHQQGRGWVDLQAGEAHV-FGKGSK 194

Query: 232 IITVEL-------------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKAT 278
             +V +                     A     +   FI     ++ A    +  + ++ 
Sbjct: 195 RRSVPVGRAAAAALQAWLAQRALPFGAAGAARLEPALFIGRRGARLTAQSVWLRLRQRSQ 254

Query: 279 KAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            AG+      H +R   A+    +      +    G   +   + YT+
Sbjct: 255 VAGLTTPVHPHMLRHSFASHLLQSSGDLRAVQELLGHANITTTQVYTR 302


>gi|50085725|ref|YP_047235.1| site-specific tyrosine recombinase [Acinetobacter sp. ADP1]
 gi|49531701|emb|CAG69413.1| site-specific tyrosine recombinase [Acinetobacter sp. ADP1]
          Length = 305

 Score =  107 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 46/281 (16%), Positives = 97/281 (34%), Gaps = 29/281 (10%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI--TTKHIRSGVESR--- 126
           + L++ + K     + + ++  +++                 +      +R  +  R   
Sbjct: 5   QQLLAMWLKERMIQNQSEHTLNAYQRDLTDFFDFCEKRKLELMQVEASDLREYLAYRVEQ 64

Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED-----MQ 180
              + SS  + L+S+R   KWA + +++ +NP    +  KRK+  +      +     + 
Sbjct: 65  SNLSSSSIQRHLSSIRQFMKWAQQSQFLNMNPVEDFK-LKRKSRPLPGMIDIETVHQILD 123

Query: 181 QFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV- 235
           Q       G+    + +   E L  SGLR ++     +  L  N   ++    G    V 
Sbjct: 124 QTAPEDELGTQLWLRDKAILELLYSSGLRLAELQGLKLIDLDFNRQLLRVTGKGNKTRVI 183

Query: 236 --------ELPDGFM--KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--N 283
                    L D     +L       ++  F++ +   +   Q     K +A +AGV  +
Sbjct: 184 PFGKKAKQSLIDWLNVYRLWKGQFTQQDPLFVSQNGGALTPRQIENRVKHQALRAGVNVD 243

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              H +R   A+    A      +    G   +   + YT 
Sbjct: 244 LHPHLLRHCFASHMLSASGDLRSVQEMLGHSNLSTTQIYTH 284


>gi|254483258|ref|ZP_05096490.1| tyrosine recombinase XerC [marine gamma proteobacterium HTCC2148]
 gi|214036481|gb|EEB77156.1| tyrosine recombinase XerC [marine gamma proteobacterium HTCC2148]
          Length = 304

 Score =  107 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 40/270 (14%), Positives = 90/270 (33%), Gaps = 24/270 (8%)

Query: 77  EYRKSAHWGSLAVNSRISFESYF---DQIIRKSGDFDYRKITTKHIRSG---VESRKHTP 130
           +Y +      L+ ++  +++       +   +       ++    IR+    +  R    
Sbjct: 14  DYLRDVR--QLSPHTLENYQRDLASLQRYGEQIKKQTAAELDEADIRAWVSQLHRRGLAG 71

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ---FKSFWS 187
           SS  + L++ R  F +  R      NP  +V+ P++  +  +    + + +   F+    
Sbjct: 72  SSIQRSLSAARSFFNYLSRINGHPRNPAAAVQAPRKPRKLPKTLDADQVDRYLMFEDDSP 131

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKLL- 245
              +     E    SGLR ++     +  +         T K     TV +    +K + 
Sbjct: 132 TALRDHAMAELFYSSGLRLAELNSVNINDIDRGSRLLTVTGKGNKTRTVPVGSAALKAID 191

Query: 246 ---------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294
                    A         F +N  Q+++        K +  KAG+  +   H +R   A
Sbjct: 192 KWLTVRPDIAADEDASVALFTSNRGQRISVRNIQARLKLQGRKAGMRQDVHPHMLRHSFA 251

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324
           +   ++      +    G   +   + YT 
Sbjct: 252 SHMLESSGDLRAVQELLGHANISTTQIYTH 281


>gi|154496597|ref|ZP_02035293.1| hypothetical protein BACCAP_00889 [Bacteroides capillosus ATCC
           29799]
 gi|150274230|gb|EDN01321.1| hypothetical protein BACCAP_00889 [Bacteroides capillosus ATCC
           29799]
          Length = 377

 Score =  107 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 55/342 (16%), Positives = 119/342 (34%), Gaps = 40/342 (11%)

Query: 24  YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAH 83
           Y R   GRR++         + A    L     + E       +  TL   +  + +   
Sbjct: 25  YGRDEDGRRVKKYRT--CATLAAARRVLREFQSELESRQQVAPRALTLDQWLEYWMEQVV 82

Query: 84  WGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSG----VESRKHTPSSAIQFLT 138
             + A  +   +    D  +    GD   +K+T +H++      +  +  +P++  +   
Sbjct: 83  EPNRAETTIYGYRKIIDNHLSDALGDIPVQKLTPRHLQEYYAMLMRDKGLSPNTVRRHHD 142

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEF 198
            +      AVRQ+ +  +P   VE P+     +  +  E++++  +  +EG+   L  + 
Sbjct: 143 LLSAALHTAVRQDIILRSPTERVEPPRVVPREVGYYGPEELKKLYAL-AEGTGLELVVKL 201

Query: 199 LLYSGLRCSDSCRAGVQHLQ----------------NNIFSIKTQKTGTIITVELPDGFM 242
               GLR  + C      +                   I   +T+   +   + + D  +
Sbjct: 202 AGMLGLRREEICGLQWSSVDFAQRRIHICAARTAAGGEIIQKETKNRSSTRVLHMSDELV 261

Query: 243 KLLAMTPIGK--------------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAH 287
           +LL     G+                  +++    ++    S+ F     +  + K + H
Sbjct: 262 RLLRRERAGQAENRLALGDKWEDSGLVAVDHMGHPLSPNAVSLAFTRFIRRNNLPKITLH 321

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADR 328
           G+R   AT+++  GA   ++    G  T       YT   D+
Sbjct: 322 GLRHTFATVASAQGAPLFDIGKALGHSTPATTGRIYTHLLDQ 363


>gi|291286467|ref|YP_003503283.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809]
 gi|290883627|gb|ADD67327.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809]
          Length = 385

 Score =  107 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 45/304 (14%), Positives = 106/304 (34%), Gaps = 42/304 (13%)

Query: 69  TTLKWLISEYRKSAHWGSLAV-----NSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
            T  W          W  L       ++  ++++    +    G+    +I   HI++ +
Sbjct: 90  GTYAW---------QWYDLKEPNIAYSTSKAYKTAVKALCETFGNMPLNQIKPSHIQTYI 140

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
              + +P +   ++  +  + +  V  + +  N    +++P+  +E I P+ K +++Q  
Sbjct: 141 SKSELSPKTISNYIGVLYSVLQAGVADDILEKNSAEYIDKPEIGSEKIDPFEKSEVEQIL 200

Query: 184 SFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ------------KT 229
             W++ + P   + +    Y+G+R  +        +  N  +I  Q            KT
Sbjct: 201 K-WTKKNHPHITVLYAIGFYTGMRIGEVLALKWSDIDFNKHTILVQRTMTANKLKDSTKT 259

Query: 230 GTIITVELPDGFMKLLAM----TPIGKETFFINNDKQKMNA-TQFSIWFKAKATKAGVNK 284
                +++     + L      T +  E   + +              +     KA +  
Sbjct: 260 SNYRIIDIIPELDEYLEAHKKYTFMKSEWVILTHYGDPFKKTDNIVDSYYKPCLKA-LKM 318

Query: 285 SAHGV---RKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRI---RLGIKNSR 337
               +   R   A +  DAG   + +    G  T++   + Y    +R    R G+  S+
Sbjct: 319 RFRILNQMRHSFACMMIDAGENLNWIKNMLGHSTLEMLFKKYGNRINRQDGTRKGVLFSK 378

Query: 338 RISS 341
           +  S
Sbjct: 379 KAES 382


>gi|224367178|ref|YP_002601341.1| Phage integrase/recombinase family protein [Desulfobacterium
           autotrophicum HRM2]
 gi|223689894|gb|ACN13177.1| Phage integrase/recombinase family protein [Desulfobacterium
           autotrophicum HRM2]
          Length = 301

 Score =  107 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 37/274 (13%), Positives = 84/274 (30%), Gaps = 31/274 (11%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKIT------TKHIRSGVESRKHTPSSAIQFLTSMR 141
           + NS  +++      +   G     ++           +  ++ +  +  +    L+++ 
Sbjct: 19  SDNSVDTYDRAIRTFLDFLGISSPEELRLITHGHVIAFKKFLQDQGRSARTINNRLSAIS 78

Query: 142 VLFKWAVRQEYVAINPCLSVER--PKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLA 195
            LF   + Q+ V IN    V+R          +  T ++++   +        G + R  
Sbjct: 79  SLFNHLIDQQVVKINVAQGVKRMPVNASRVEAKVLTPDEVRNLLNSPDLSKLQGLRDRAI 138

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIK---TQKTGTIITVELPDGFMKLLA------ 246
              L ++G R S+ C   ++               K G    + +       L       
Sbjct: 139 LSTLFFTGCRVSEVCSLKIKDFYEEQGFFVLDFWVKGGKRNRMAINQELQIALDQYLTDA 198

Query: 247 -MTPIGKETFFI--------NNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATI 296
              P      F+        ++ K+ ++       F   A   G+   + H  R    T 
Sbjct: 199 GHGPDPASFLFLPVKSGYKASDPKRNLSRRTIDHLFNKYANTIGIAGITPHSARATFITQ 258

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
           + +       +  T G   +   + Y K   + R
Sbjct: 259 ALENNCPIEAVQKTVGHAQIKTTQMYDKRTAKYR 292


>gi|326572966|gb|EGE22945.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis CO72]
          Length = 331

 Score =  107 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 45/297 (15%), Positives = 106/297 (35%), Gaps = 30/297 (10%)

Query: 58  REYINSPRKKPTTLKW-LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY----- 111
               +S +  P++  W  +S +       + + ++  ++++   Q        +Y     
Sbjct: 9   APTHSSHQSDPSSPAWGYLSSWCDELRLQNYSKHTITTYQTALIQFFNFLESDNYLGGDP 68

Query: 112 ----RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167
               R+  T+   + +E  K  P SA   L+++R+ +++ ++Q  +A+NP    +     
Sbjct: 69  LACRRQDLTRFFSTRLEEEKIKPISAKLSLSAIRIFYQFLIKQGVIAVNPTTGYKIKSAP 128

Query: 168 TEGIRPWTKEDMQQFKS-FWSEGS-------QPRLAFEFLLYSGLRCSDSCRAGVQHLQN 219
            +      +  ++Q       E +       + +  FE +  SGLR S+     +  +  
Sbjct: 129 RKLPTVADELLIKQLLDQKTPEDTAKAYLWIRDKAMFELMYSSGLRLSELAGLNMGDVNF 188

Query: 220 NIFSIKTQKTGTIIT---------VELPDGFMKLLAMTPIGKETFFINND-KQKMNATQF 269
           +I  ++    G             + L D             +  FI+     +++    
Sbjct: 189 DIGIVRVLGKGNKTRQVPVGKKAMIALQDYLPHRNLWQKKNCKALFISERHGTRLSTRAI 248

Query: 270 SIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            +  K  AT AG+  +   H +R   A+    +      +    G + +   + YT 
Sbjct: 249 QLRLKVCATMAGIELNMYPHLLRHCFASHVLSSSGDLRAIQEMLGHQNISTTQIYTH 305


>gi|311109403|ref|YP_003982256.1| tyrosine recombinase XerC [Achromobacter xylosoxidans A8]
 gi|310764092|gb|ADP19541.1| tyrosine recombinase XerC [Achromobacter xylosoxidans A8]
          Length = 331

 Score =  107 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 43/279 (15%), Positives = 85/279 (30%), Gaps = 39/279 (13%)

Query: 85  GSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIR---SGVESRKHTPSSAIQFLTS 139
              + ++   +      +            KI   HIR   + + ++   P S  + L +
Sbjct: 32  RRYSPHTLDGYRRELHFLRELADHAKLPLDKIGNGHIRQFVARLHAQGRGPRSLARTLAA 91

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-------SEGSQP 192
            R  ++W      +A NP   V  PK      +  + E  Q                 + 
Sbjct: 92  WRGFYQWWAPAIELAGNPVAGVRAPKAPRGLPKALSVEQTQALLDRAPAQVATEPAALRD 151

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQ------NNIFS------IKTQKTGTIITVELPDG 240
           +   E L  SGLR S+     +++ +          S      I   K G   +V +   
Sbjct: 152 QAMLELLYSSGLRLSELVGLDLRYERSGNYESRGWLSLEEAEVIVLGKGGKRRSVPVGQA 211

Query: 241 FMKLLA-------------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKS 285
            ++ L                P      F+    ++++     +     A +AGV  +  
Sbjct: 212 ALEALRKWIAVRPQLTPFTAQPEDAAALFLGARGRRISPRVVQLQLARIAQQAGVPTHVH 271

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            H +R   A+    +      +    G   +   + YT+
Sbjct: 272 PHVLRHSFASHVLQSAQDLRAVQEMLGHANISTTQIYTR 310


>gi|217961112|ref|YP_002339680.1| prophage LambdaBa03, site-specific recombinase, phage integrase
           family [Bacillus cereus AH187]
 gi|229140330|ref|ZP_04268885.1| hypothetical protein bcere0013_34290 [Bacillus cereus BDRD-ST26]
 gi|217063254|gb|ACJ77504.1| prophage LambdaBa03, site-specific recombinase, phage integrase
           family [Bacillus cereus AH187]
 gi|228642891|gb|EEK99167.1| hypothetical protein bcere0013_34290 [Bacillus cereus BDRD-ST26]
          Length = 304

 Score =  107 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 48/291 (16%), Positives = 94/291 (32%), Gaps = 26/291 (8%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR----KSGDFDYRKITTKHIRSGVESR 126
           L+ +I EY            +  +      Q+ R    + G  +   I T H++  V ++
Sbjct: 3   LEDVIEEYLYHCLAKGFTPKTMKNKRQEMKQLKRFLMDEKGISELEAINTLHLKQYVRTK 62

Query: 127 ---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----M 179
                 P S +     +R  F W  ++EY+  N    VE PK   + ++ +T ++    +
Sbjct: 63  YKEGLQPQSIVSMFKLVRAFFSWCQKEEYLKENIAKKVELPKVPKKLLKGFTIQEVSAMI 122

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239
             F       ++ +     L   GLR  +      Q+++     +  +     I + +  
Sbjct: 123 DAFSYKNYIEARNKAIVAMLSDCGLRAMEIRGLLTQNVKETTILVNGKGNKERI-MFISP 181

Query: 240 GFMKLLAM-----------TPIGKETFFINNDKQKMNATQFSIWFKAKATK---AGVNKS 285
              K+L               +  + +F++     ++        K    +     V  S
Sbjct: 182 PLKKILIRYERLRKQYLKDKIVKTDNYFLSYTADPLSHMGIYNVIKEAGKRVEVEEVRCS 241

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
            H  R F A      G     L    G   V   + Y +  +   L  K  
Sbjct: 242 PHTFRHFFAVQCILNGIDIFTLSKLLGHSDVSTTQRYLQSLEDFELIKKAM 292


>gi|15610031|ref|NP_217410.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis
           H37Rv]
 gi|31794070|ref|NP_856563.1| site-specific tyrosine recombinase XerC [Mycobacterium bovis
           AF2122/97]
 gi|121638775|ref|YP_978999.1| site-specific tyrosine recombinase XerC [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|148662738|ref|YP_001284261.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis
           H37Ra]
 gi|148824083|ref|YP_001288837.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis
           F11]
 gi|215404868|ref|ZP_03417049.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis
           02_1987]
 gi|215431842|ref|ZP_03429761.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis
           EAS054]
 gi|219558917|ref|ZP_03537993.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis
           T17]
 gi|224991267|ref|YP_002645956.1| site-specific tyrosine recombinase [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|253798018|ref|YP_003031019.1| integrase xerC [Mycobacterium tuberculosis KZN 1435]
 gi|254232988|ref|ZP_04926315.1| integrase/recombinase xerC [Mycobacterium tuberculosis C]
 gi|254365534|ref|ZP_04981579.1| integrase/recombinase xerC [Mycobacterium tuberculosis str.
           Haarlem]
 gi|254551966|ref|ZP_05142413.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis
           '98-R604 INH-RIF-EM']
 gi|260187913|ref|ZP_05765387.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis
           CPHL_A]
 gi|260202029|ref|ZP_05769520.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis
           T46]
 gi|260206212|ref|ZP_05773703.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis
           K85]
 gi|289444449|ref|ZP_06434193.1| tyrosine recombinase XerC [Mycobacterium tuberculosis T46]
 gi|289448559|ref|ZP_06438303.1| integrase xerC [Mycobacterium tuberculosis CPHL_A]
 gi|289553317|ref|ZP_06442527.1| integrase xerC [Mycobacterium tuberculosis KZN 605]
 gi|289571083|ref|ZP_06451310.1| integrase xerC [Mycobacterium tuberculosis T17]
 gi|289575599|ref|ZP_06455826.1| integrase xerC [Mycobacterium tuberculosis K85]
 gi|289746693|ref|ZP_06506071.1| tyrosine recombinase XerC [Mycobacterium tuberculosis 02_1987]
 gi|289755006|ref|ZP_06514384.1| tyrosine recombinase XerC [Mycobacterium tuberculosis EAS054]
 gi|294994010|ref|ZP_06799701.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis
           210]
 gi|297635512|ref|ZP_06953292.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis
           KZN 4207]
 gi|297732511|ref|ZP_06961629.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis
           KZN R506]
 gi|306777182|ref|ZP_07415519.1| integrase xerC [Mycobacterium tuberculosis SUMu001]
 gi|306781089|ref|ZP_07419426.1| integrase xerC [Mycobacterium tuberculosis SUMu002]
 gi|306785729|ref|ZP_07424051.1| integrase xerC [Mycobacterium tuberculosis SUMu003]
 gi|306789768|ref|ZP_07428090.1| integrase xerC [Mycobacterium tuberculosis SUMu004]
 gi|306794582|ref|ZP_07432884.1| integrase xerC [Mycobacterium tuberculosis SUMu005]
 gi|306798823|ref|ZP_07437125.1| integrase xerC [Mycobacterium tuberculosis SUMu006]
 gi|306804671|ref|ZP_07441339.1| integrase xerC [Mycobacterium tuberculosis SUMu008]
 gi|306808863|ref|ZP_07445531.1| integrase xerC [Mycobacterium tuberculosis SUMu007]
 gi|306968962|ref|ZP_07481623.1| integrase xerC [Mycobacterium tuberculosis SUMu009]
 gi|306973299|ref|ZP_07485960.1| integrase xerC [Mycobacterium tuberculosis SUMu010]
 gi|307081007|ref|ZP_07490177.1| integrase xerC [Mycobacterium tuberculosis SUMu011]
 gi|307085605|ref|ZP_07494718.1| integrase xerC [Mycobacterium tuberculosis SUMu012]
 gi|313659843|ref|ZP_07816723.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis
           KZN V2475]
 gi|54039881|sp|P67629|XERC_MYCBO RecName: Full=Tyrosine recombinase xerC
 gi|54042778|sp|P67628|XERC_MYCTU RecName: Full=Tyrosine recombinase xerC
 gi|166918887|sp|A1KMN8|XERC_MYCBP RecName: Full=Tyrosine recombinase xerC
 gi|166918891|sp|A5U6P9|XERC_MYCTA RecName: Full=Tyrosine recombinase xerC
 gi|254799347|sp|C1AG09|XERC_MYCBT RecName: Full=Tyrosine recombinase xerC
 gi|3250705|emb|CAA98378.1| PROBABLE INTEGRASE/RECOMBINASE XERC [Mycobacterium tuberculosis
           H37Rv]
 gi|31619665|emb|CAD96605.1| PROBABLE INTEGRASE/RECOMBINASE XERC [Mycobacterium bovis AF2122/97]
 gi|121494423|emb|CAL72904.1| Probable integrase/recombinase xerC [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|124602047|gb|EAY61057.1| integrase/recombinase xerC [Mycobacterium tuberculosis C]
 gi|134151047|gb|EBA43092.1| integrase/recombinase xerC [Mycobacterium tuberculosis str.
           Haarlem]
 gi|148506890|gb|ABQ74699.1| tyrosine recombinase [Mycobacterium tuberculosis H37Ra]
 gi|148722610|gb|ABR07235.1| integrase/recombinase xerC [Mycobacterium tuberculosis F11]
 gi|224774382|dbj|BAH27188.1| site-specific tyrosine recombinase [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|253319521|gb|ACT24124.1| integrase xerC [Mycobacterium tuberculosis KZN 1435]
 gi|289417368|gb|EFD14608.1| tyrosine recombinase XerC [Mycobacterium tuberculosis T46]
 gi|289421517|gb|EFD18718.1| integrase xerC [Mycobacterium tuberculosis CPHL_A]
 gi|289437949|gb|EFD20442.1| integrase xerC [Mycobacterium tuberculosis KZN 605]
 gi|289540030|gb|EFD44608.1| integrase xerC [Mycobacterium tuberculosis K85]
 gi|289544837|gb|EFD48485.1| integrase xerC [Mycobacterium tuberculosis T17]
 gi|289687221|gb|EFD54709.1| tyrosine recombinase XerC [Mycobacterium tuberculosis 02_1987]
 gi|289695593|gb|EFD63022.1| tyrosine recombinase XerC [Mycobacterium tuberculosis EAS054]
 gi|308214464|gb|EFO73863.1| integrase xerC [Mycobacterium tuberculosis SUMu001]
 gi|308326075|gb|EFP14926.1| integrase xerC [Mycobacterium tuberculosis SUMu002]
 gi|308329639|gb|EFP18490.1| integrase xerC [Mycobacterium tuberculosis SUMu003]
 gi|308333778|gb|EFP22629.1| integrase xerC [Mycobacterium tuberculosis SUMu004]
 gi|308337172|gb|EFP26023.1| integrase xerC [Mycobacterium tuberculosis SUMu005]
 gi|308340939|gb|EFP29790.1| integrase xerC [Mycobacterium tuberculosis SUMu006]
 gi|308344815|gb|EFP33666.1| integrase xerC [Mycobacterium tuberculosis SUMu007]
 gi|308348763|gb|EFP37614.1| integrase xerC [Mycobacterium tuberculosis SUMu008]
 gi|308353464|gb|EFP42315.1| integrase xerC [Mycobacterium tuberculosis SUMu009]
 gi|308357329|gb|EFP46180.1| integrase xerC [Mycobacterium tuberculosis SUMu010]
 gi|308361213|gb|EFP50064.1| integrase xerC [Mycobacterium tuberculosis SUMu011]
 gi|308364867|gb|EFP53718.1| integrase xerC [Mycobacterium tuberculosis SUMu012]
 gi|323718504|gb|EGB27675.1| integrase xerC [Mycobacterium tuberculosis CDC1551A]
 gi|326904508|gb|EGE51441.1| integrase xerC [Mycobacterium tuberculosis W-148]
 gi|328457792|gb|AEB03215.1| integrase xerC [Mycobacterium tuberculosis KZN 4207]
          Length = 298

 Score =  107 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 42/267 (15%), Positives = 90/267 (33%), Gaps = 26/267 (9%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHTPSSA---IQFLTSM 140
             +V++R ++      +     D       +T   +RS + +     ++     +  +++
Sbjct: 17  GRSVHTRRAYLGDLRSLFAFLADRGSSLDALTLSVLRSWLAATAGAGAARTTLARRTSAV 76

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS--------QP 192
           +    WAVR+  +A +P   ++ PK +        ++   +  +    G+        + 
Sbjct: 77  KAFTAWAVRRGLLAGDPAARLQVPKARRTLPAVLRQDQALRAMAAAESGAEQGDPLALRD 136

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM---- 247
           RL  E L  +G+R S+ C   V  +      ++   K     TV         L      
Sbjct: 137 RLIVELLYATGIRVSELCGLDVDDIDTGHRLVRVLGKGNKQRTVPFGQPAADALHAWLVD 196

Query: 248 ------TPIGKETFFINNDKQKMNATQFSIWFKA--KATKAGVNKSAHGVRKFSATISAD 299
                 T        +    ++++  Q          A     +   HG+R  +AT   +
Sbjct: 197 GRRALVTAESGHALLLGARGRRLDVRQARTAVHQTVAAVDGAPDMGPHGLRHSAATHLLE 256

Query: 300 AGATAHELMATYGWKTVDQAETYTKGA 326
            GA    +    G  ++   + YT  A
Sbjct: 257 GGADLRVVQELLGHSSLATTQLYTHVA 283


>gi|320333377|ref|YP_004170088.1| integrase family protein [Deinococcus maricopensis DSM 21211]
 gi|319754666|gb|ADV66423.1| integrase family protein [Deinococcus maricopensis DSM 21211]
          Length = 297

 Score =  107 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 47/276 (17%), Positives = 87/276 (31%), Gaps = 22/276 (7%)

Query: 70  TLKWLISEY-------RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122
           ++  L   +       R+S +  +    +R +   + ++   ++          +     
Sbjct: 2   SIDQLWQHFAYHLKVKRRSKNTLNFYDVTRRTLARFLEEQGVEATTDTLTVSQLRGFLVW 61

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           +E +   P        ++R LF WA R+E V+ N    +E P    E     T E + + 
Sbjct: 62  LEEQGLGPGGIHAHARALRALFNWAEREELVSRNLASRLELPSLPHERQPAITSERLWKL 121

Query: 183 KSFWS-EGSQPR-LAFEFLLY-SGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELP 238
                  G Q R  A    L+ +G+R  +     V+ L      I+    G     V + 
Sbjct: 122 LGACKGAGQQLRDTAMLLTLFDTGVRVHELIGLKVEDLLFERGLIRVVGKGNKERFVPIG 181

Query: 239 DG--------FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAH 287
                       +       G    F++   + M  +  SI     A   G+     + H
Sbjct: 182 SKAMSATSAYLRRERKQQHPGVLHVFLSRSGEAMTRSGVSIRLAKLAKNTGIEREVCAPH 241

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
             R+  A      G     L    G  ++D    Y 
Sbjct: 242 AFRRGFAVEFLRNGGDVFTLQQIMGHSSLDMTRRYV 277


>gi|283470467|emb|CAQ49678.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           ST398]
          Length = 298

 Score =  107 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 37/266 (13%), Positives = 94/266 (35%), Gaps = 22/266 (8%)

Query: 85  GSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVE---SRKHTPSSAIQFLTS 139
            + + ++  S++    Q  +  +           +  R+ +    S     +S  + +++
Sbjct: 16  RNFSEHTLKSYQDDLIQFNQFLEQEHLQLNTFEYRDARNYLSYLYSNHLKRTSVSRKIST 75

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KSFWSEGSQPRLA 195
           +R  +++ +  +   INP + +  PK++    + + +E+M+      +   S+  + R+ 
Sbjct: 76  LRTFYEYWMTLDENIINPFVQLVHPKKEKYLPQFFYEEEMEALFKTVEEDASKSLRDRVI 135

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVE--------LPDGFMKLL 245
            E L  +G+R S+      Q +    N  ++   K      V         + +      
Sbjct: 136 LELLYATGIRVSELVNIKKQDIDFYANGVTV-LGKGSKERFVPFGAYCRQSIENYLEHFK 194

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATK-AGV-NKSAHGVRKFSATISADAGAT 303
            +     +   +N   + +              + AGV     H +R   AT   + GA 
Sbjct: 195 PIQSCNHDFLIVNMKGEAITERGVRYVLNNIVKRTAGVSEIHPHKLRHTFATHLLNQGAD 254

Query: 304 AHELMATYGWKTVDQAETYTKGADRI 329
              + +  G   +     YT  +++ 
Sbjct: 255 LRTVQSLLGHVNLSTTGKYTHVSNQQ 280


>gi|255026829|ref|ZP_05298815.1| hypothetical protein LmonocytFSL_11776 [Listeria monocytogenes FSL
           J2-003]
          Length = 259

 Score =  107 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 32/230 (13%), Positives = 82/230 (35%), Gaps = 19/230 (8%)

Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
           +  +   + ++ +  + ++  + ++S+R  + + +R+  +  NP   V   K +    + 
Sbjct: 13  LDVRIYLTELKQKSFSRTTVARKISSLRSFYTFLLRENVINENPFTYVSHAKNQLRLPKF 72

Query: 174 WTKEDMQQ-----FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQ 227
           +  E+M+      ++   +   + R+  E L  +G+R S+     +  L  +  +I    
Sbjct: 73  FYSEEMEALFQVVYEDNETLTLRDRVLLEVLYGTGIRVSECAGILLPDLDTSYQAILIRG 132

Query: 228 KTGTIITVEL-----------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK 276
           K      V                 + L++      +   +N+    +            
Sbjct: 133 KGNKERYVPFGAYAEDAITDYLPERVNLMSRYKKSHDALLVNHYGDPLTTRGIRYCLTKI 192

Query: 277 ATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            +KA + +    H +R   AT   + GA    +    G  ++   + YT 
Sbjct: 193 ISKASLTRKIHPHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTH 242


>gi|239500991|ref|ZP_04660301.1| site-specific tyrosine recombinase [Acinetobacter baumannii AB900]
          Length = 304

 Score =  107 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 49/279 (17%), Positives = 98/279 (35%), Gaps = 27/279 (9%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVESR---- 126
            L+S + K     + + ++  ++E      +   +    D R +    +R  +  R    
Sbjct: 6   QLLSMWLKERKIQNQSEHTITAYERDVRSFLEFCELKKVDLRNVEASDLREYLAQRVEQD 65

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
           + + SS  + LTS+R   KWA + +Y+ INP    +  ++          E + Q     
Sbjct: 66  QLSSSSMQRHLTSIRQFMKWAEQGKYLEINPTDDFKLKRQPRPLPGMIDIETVNQILDQP 125

Query: 187 SEG--------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV--- 235
                       + +   E L  SGLR ++     ++ +  N   ++    G    +   
Sbjct: 126 MPEKPVDQQLWLRDKAMLELLYSSGLRLAELQGLTIKDIDFNRQLVRITGKGNKTRIVPF 185

Query: 236 --ELPDGFMKLLAMTPIGKETF------FINNDKQKMNATQFSIWFKAKATKAGV--NKS 285
             +  +  +  L +  I K  F      FI+     +   Q     K +A +AGV  +  
Sbjct: 186 GKKAKESLLNWLKIYNIWKGHFDQNASVFISQRGSALTPRQIEKRVKLQAQRAGVNVDLH 245

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            H +R   A+    +      +    G   +   + YT 
Sbjct: 246 PHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTH 284


>gi|84498372|ref|ZP_00997169.1| tyrosine recombinase [Janibacter sp. HTCC2649]
 gi|84381872|gb|EAP97755.1| tyrosine recombinase [Janibacter sp. HTCC2649]
          Length = 325

 Score =  107 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 44/300 (14%), Positives = 89/300 (29%), Gaps = 39/300 (13%)

Query: 73  WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRK-------------SGDFDYRKITTKH 118
            +I  + +      S + ++  ++ +     +               +     + I    
Sbjct: 19  AVIDAFERHLRLERSRSPHTVRAYLADLRDFLAHVDGEGANEGGTPRAPQTALQDIRLAD 78

Query: 119 IRSGV---ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
           +R+ +    +     SS  +   S+R  F WA RQ +V ++P L +  PKR         
Sbjct: 79  LRAWLGVLAAAGAARSSVARRSASLRTFFGWATRQGHVDVDPSLRLVAPKRHRTLPPVLA 138

Query: 176 KEDMQQFKSFW--------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT- 226
           K+D                    + R   E L  +G+R  +     +  +  +   ++  
Sbjct: 139 KDDAAGLLDVAAVAADDNDPVHVRNRAVLELLYATGVRVGELTGLDIDDVDFHSNVVRVI 198

Query: 227 QKTGTIITVELPDGFMKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAK 276
            K      V         LA                   F+    ++++  Q        
Sbjct: 199 GKGDKERRVPFGGPARSALAKWLDVGRPRLVVDGSGPGLFLGQRGRRIDPRQVRTLVHDM 258

Query: 277 A--TKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIK 334
                   +   HG+R  +AT   + GA    +    G  ++   + YT      RL   
Sbjct: 259 LTHVPDAPDLGPHGLRHSAATHLLEGGADLRMVQELLGHASLATTQIYTH-VSIERLAAS 317


>gi|296392530|ref|YP_003657414.1| integrase family protein [Segniliparus rotundus DSM 44985]
 gi|296179677|gb|ADG96583.1| integrase family protein [Segniliparus rotundus DSM 44985]
          Length = 349

 Score =  107 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 41/274 (14%), Positives = 80/274 (29%), Gaps = 9/274 (3%)

Query: 59  EYINSPRKKPTTLKW------LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYR 112
             + SP     T         L+ E+        L+  +               G    +
Sbjct: 48  PAVLSPVNVAGTHHAHNVAMLLVQEWELFMLARRLSQRTITERIRVIKSFASSIGIEPSQ 107

Query: 113 KITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
                  R   +      SS   +   ++  FKW    E+   +P + V   +      R
Sbjct: 108 ASALDVARWLAQQSSLGQSSLATYSQYLKAWFKWLQVHEHRTDDPMVKVGTVRYPDRAPR 167

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
           P +  D+ +     +   + RL       +GLR  +  +   + + + +F     K    
Sbjct: 168 PVSDRDLARLLETVNR-KRTRLMVLLYCLAGLRAFEIAKLRGEDIVDGVFVRVLGKGNKE 226

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINND--KQKMNATQFSIWFKAKATKAGVNKSAHGVR 290
             V L      +    P     F  ++      ++    S        +AGV  + H +R
Sbjct: 227 RLVPLHPILQAIAPTMPERGWWFPRDSRWPGMHISGKSVSQTISLTMRRAGVRATPHQLR 286

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            +  T   D G     +       ++     YT+
Sbjct: 287 HWQGTTLLDEGVDIRVVQEIMRHASISTTAQYTQ 320


>gi|218260320|ref|ZP_03475692.1| hypothetical protein PRABACTJOHN_01354 [Parabacteroides johnsonii
           DSM 18315]
 gi|218224605|gb|EEC97255.1| hypothetical protein PRABACTJOHN_01354 [Parabacteroides johnsonii
           DSM 18315]
          Length = 397

 Score =  107 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 43/212 (20%), Positives = 79/212 (37%), Gaps = 18/212 (8%)

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE---RPKRKTEGIRPWTKEDMQQFKSFWS 187
           +S I +   +R     A ++  + +NP    +   + K +       T ++++       
Sbjct: 180 NSVIAYYGVLRTAINRAYKEGIITVNPTKEFDFASKVKAEVSRREYLTIDELKLLIGTEC 239

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDGFMK 243
           +    + AF F    GLR SD  +     L    +     IK QKT   + + + D  +K
Sbjct: 240 KYEIMKQAFLFSCLCGLRVSDIRKLKWNDLQKSGERIRIEIKMQKTKEPLYLPISDEALK 299

Query: 244 LLAMT--PIGKETFF-INNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISA 298
            L       G +  F + ++         +   +  A  AGV  + S H  R   AT+  
Sbjct: 300 WLPQQNEAKGDDLIFPLTHEG------TINKILQKWAKDAGVIKHISFHVARHTHATMML 353

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIR 330
             GA  + +    G K +   + Y K  D+ +
Sbjct: 354 TLGADLYTVSKLLGHKNIATTQIYAKIVDKKK 385


>gi|309775481|ref|ZP_07670483.1| integrase/recombinase XerD [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916777|gb|EFP62515.1| integrase/recombinase XerD [Erysipelotrichaceae bacterium 3_1_53]
          Length = 323

 Score =  107 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 46/277 (16%), Positives = 93/277 (33%), Gaps = 26/277 (9%)

Query: 78  YRKSAHWGSLA--VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH------- 128
           Y ++    +LA   + +   + Y   +I K        I  + I+S +   +        
Sbjct: 13  YIQAVDQKALATIHSYQQDLQEYEVWLIGKH-KQVMEDILPQDIQSFLSELEDGQKGEDG 71

Query: 129 -TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              SS    LTS+ +  ++   Q    ++P + +   K++ +    +   D+++    + 
Sbjct: 72  RKRSSVNHMLTSIHMFHRYITMQHPTILDPSIHLRGGKKEQQLPLYFNPHDIERLLDSFG 131

Query: 188 EGSQ---PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMK 243
           E  +    +   E L   GLR S+ C   +  +      ++   K      V +    + 
Sbjct: 132 EDERSLYQKAILELLYGCGLRVSEVCELRLNQVHLEQGYLRVIGKGDKERMVPMHKRCVL 191

Query: 244 LLAM---------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKF 292
            L +                 FIN+    +         K +     ++   SAH  R  
Sbjct: 192 ALRVYVTQIRPGWEKRKSTRVFINSRGNILTRQYVHTLIKQRLHMLNLDERLSAHSFRHS 251

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            AT   D GA    +    G + +   + YT   +R 
Sbjct: 252 FATHLLDGGADLRVVQELLGHRDIATTQIYTHVQNRR 288


>gi|260549307|ref|ZP_05823527.1| site-specific tyrosine recombinase [Acinetobacter sp. RUH2624]
 gi|260407713|gb|EEX01186.1| site-specific tyrosine recombinase [Acinetobacter sp. RUH2624]
          Length = 308

 Score =  107 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 48/279 (17%), Positives = 98/279 (35%), Gaps = 27/279 (9%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVESR---- 126
            L+S + K     + + ++  ++E      +    S   + + +    +R  +  R    
Sbjct: 10  QLLSMWLKERKIQNQSEHTITAYERDVKSFLEFCDSKKINLKNVEASDLREYLAQRVEQD 69

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
           + + SS  + LTS+R   KWA + +Y+ INP    +  ++          E + Q     
Sbjct: 70  QLSASSMQRHLTSIRQFMKWAEQGKYLEINPTDDFKLKRQPRPLPGMIDIETVNQILDQP 129

Query: 187 SEG--------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV--- 235
                       + +   E L  SGLR ++     ++ +  N   ++    G    +   
Sbjct: 130 MPEKPIDQQLWLRDKAMLELLYSSGLRLAELQGLTIKDIDFNRHLVRITGKGNKTRIVPF 189

Query: 236 --ELPDGFMKLLAMTPIGKETF------FINNDKQKMNATQFSIWFKAKATKAGV--NKS 285
             +  +  +  L +  I K  F      FI+     +   Q     K +A +AGV  +  
Sbjct: 190 GKKAKESLLNWLKVYKIWKGHFDQNAFVFISQHGGVLTPRQIEKRVKLQAQRAGVNVDLH 249

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            H +R   A+    +      +    G   +   + YT 
Sbjct: 250 PHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTH 288


>gi|162448003|ref|YP_001621135.1| integrase/recombinase, XerD-like protein [Acholeplasma laidlawii
           PG-8A]
 gi|161986110|gb|ABX81759.1| integrase/recombinase, XerD-like protein [Acholeplasma laidlawii
           PG-8A]
          Length = 306

 Score =  107 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 31/230 (13%), Positives = 77/230 (33%), Gaps = 22/230 (9%)

Query: 116 TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
            ++  S ++++     +  + L+S++  + + + +E +  N    ++ PK          
Sbjct: 54  ARNYISYLDNQDFKKKTIARKLSSLKNFYNYLIFKELIEENIFSDIKAPKVAKTLPHIID 113

Query: 176 KEDM----QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKT 229
           +E +        +    G +  +  + L   G+R S+     ++ +   +    I   K 
Sbjct: 114 EEAINYLFDSIDTSKPLGYRNLVILDLLYSCGVRASELINLEIKDIYLSSGQILIH-GKG 172

Query: 230 GTIITVELPDGFMKLLAM---------TPIGKET----FFINNDKQKMNATQFSIWFKAK 276
                + L +  ++ +              G +T     FIN     +      +     
Sbjct: 173 KKDRYIILHEKLIEEIRHYLSFVRVTLLSKGDDTNQQKLFINYKGGPLTVRGLRVILNQM 232

Query: 277 ATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              +G   +   H +R   AT   + GA    +    G + +   + YT 
Sbjct: 233 IKDSGETYAIHPHMLRHAFATTMLNHGADLRVVQELLGHEHLKSTQIYTH 282


>gi|307822023|ref|ZP_07652255.1| integrase family protein [Methylobacter tundripaludum SV96]
 gi|307736589|gb|EFO07434.1| integrase family protein [Methylobacter tundripaludum SV96]
          Length = 381

 Score =  107 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 37/256 (14%), Positives = 87/256 (33%), Gaps = 23/256 (8%)

Query: 91  SRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQF--------LTSM 140
           ++  +            D   R IT+  + S  + R  +  P +  +         L  +
Sbjct: 31  TQEKYRIAL-YCRYPIADLPVRSITSVDVASFRDQRLSEINPRTGNRLASATVRLDLALL 89

Query: 141 RVLFKWA-VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-SEGSQPRLA-FE 197
             +F+   +       NP  ++ +PK      R  T  + +    +   +G++  LA F+
Sbjct: 90  SDMFRIGKIEWGICDDNPVANIRKPKLSPGRDRRLTAREERMILRYCNKQGTKAMLAIFQ 149

Query: 198 FLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF 255
             L + +R  +      +H+  +  I  +   K+G+   V L      +L    +     
Sbjct: 150 LALETAMRQGEILSLRWEHINLKARIAHLSDTKSGSKRDVPLTMAARDILTGQGVKSSGR 209

Query: 256 FINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGA-TAHELMATYGW 313
             +       +      +++      + +   H +R  + +   + G     E+ A  G 
Sbjct: 210 VFS-----YTSNGLKSSWRSMIRNLLINDLHFHDLRHEAISRLVERGVFDLMEVAAISGH 264

Query: 314 KTVDQAETYTKGADRI 329
           K++   + YT    + 
Sbjct: 265 KSLAMLKRYTHLRTQR 280


>gi|71725297|ref|YP_272272.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. phaseolicola 1448A]
 gi|71558887|gb|AAZ38096.1| site-specific recombinase, phage integrase family [Pseudomonas
           syringae pv. phaseolicola 1448A]
          Length = 319

 Score =  107 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 52/276 (18%), Positives = 103/276 (37%), Gaps = 31/276 (11%)

Query: 84  WGSLA-VNSRISFESYFDQIIRKSGDF---DYRKITTKHI---RSGVESRKHTPSSAIQF 136
           + +L    +R ++++         G     D+R++T  H+   R+ +E R    ++  + 
Sbjct: 33  FANLDNRRTRRAYQNDLTDFSSFIGLASADDFRQVTRSHVLAWRADLEQRGLAGATIRRK 92

Query: 137 LTSMRVLFKWAVRQE-YVAINPCLSVERPKRKT-EGIRPWTKED-----MQQFKSFWSEG 189
           L ++  LF + +        NP   V+RP+ +T EG  P   +      ++   +   +G
Sbjct: 93  LAALASLFDYLLENNAVAGGNPVHGVKRPRIETNEGKTPALGDHQAKQLLEAPDTETLKG 152

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTII-TVELPDGFMKLL- 245
            + R     LLY GLR  ++ +     L  +  I  ++    G+ I  + L     + + 
Sbjct: 153 LRDRAILAVLLYHGLRREEAAQLHTHDLQERRGIKHLRVHGKGSKIRFLPLHPVAAERIY 212

Query: 246 ---------AMTPIGKETFFI-NNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKF 292
                    A  P               + A       +A A KAG+   +   HG+R  
Sbjct: 213 AYLEQDSERAAKPGPLFRSLRGTTTGAAITANGIYSVVEAYAKKAGIVVEHLGVHGLRAT 272

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           +AT + +  A   ++    G   +     Y +   R
Sbjct: 273 AATNALEHDADIAKVQMWLGHANISTTRLYDRRGQR 308


>gi|306827181|ref|ZP_07460471.1| integrase [Streptococcus pyogenes ATCC 10782]
 gi|304430637|gb|EFM33656.1| integrase [Streptococcus pyogenes ATCC 10782]
          Length = 362

 Score =  107 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 49/302 (16%), Positives = 95/302 (31%), Gaps = 27/302 (8%)

Query: 48  MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG 107
            +A       +  ++ P+    T   L  ++ K             +  +    I+ K  
Sbjct: 40  QAARETLISLQAELDKPKSS-MTFGALTDQWLKEYEKTVQGSTYLKTERNINKHILPKLD 98

Query: 108 DFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167
                 I    I+   E   +      + L  +R +   AVR  Y+  NP L +  PK K
Sbjct: 99  KVKIGDINPLLIQRLTEEWCNDLKYGGKILGLVRNILNLAVRYGYINNNPALPITPPKIK 158

Query: 168 TEG---IRPWTKEDMQQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222
            +       +T + ++QF     +         F  L ++G+R  +        L  N  
Sbjct: 159 RKRKMNNNFYTLDQLKQFLELVEKTDNIEKIALFRLLAFTGIRKGELLALTWDDLNGNTL 218

Query: 223 SIKTQKTGTIITVEL------------------PDGFMKLLAMTPIGKETFFINNDKQKM 264
           SI    T T + +E+                   +  ++L    P     F  +     M
Sbjct: 219 SINKAVTRTQVGLEIDVTKTKSSDRLISLDDETLEILLELHETFPTSTLMF-QSESGGIM 277

Query: 265 NATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TY 322
             +    W         + + + HG R   A++  ++G +  ++    G   +      Y
Sbjct: 278 TPSLPRKWLLQIIKGTDLPQITIHGFRHTHASLLFESGLSLKQVQHRLGHGDLQTTMNVY 337

Query: 323 TK 324
           T 
Sbjct: 338 TH 339


>gi|147678470|ref|YP_001212685.1| integrase [Pelotomaculum thermopropionicum SI]
 gi|146274567|dbj|BAF60316.1| integrase [Pelotomaculum thermopropionicum SI]
          Length = 314

 Score =  107 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 37/282 (13%), Positives = 90/282 (31%), Gaps = 17/282 (6%)

Query: 56  PKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT 115
            K++     ++ P T +  +  +        LA  +   +  +  Q   +     Y    
Sbjct: 2   AKKKVATVRKEVPDTWQEALQGFLFWKQAQGLAERTLTDYRKHVSQFFNRHP-KAYNSKN 60

Query: 116 TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
            K       ++   P++    L +++  F W +++     NP    +R K +   +    
Sbjct: 61  LKSAVLEYMAQPVKPATFNLRLVNLKAFFDWCIQEGIFTDNPLAGFKRRKAEGRVVNI-E 119

Query: 176 KEDMQQFKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI----KTQ 227
           +E + +  +  +     G +        L +G+R  ++    V  +      +    +  
Sbjct: 120 EEKLARLLTLPNKETFAGLRDYALLLLTLDTGIRPKEAFSLLVDDINLRSLEVCIRSEIA 179

Query: 228 KTGTIITVELPD-------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280
           KT T  T+ +           ++            F +++  KM   ++    +  + + 
Sbjct: 180 KTRTTRTLPISPVTAQVIRELLQSRHPAWKNSTPVFCSSEGGKMTDLKWGDRLEVYSKQL 239

Query: 281 GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           GV    + +R   A      G     L    G   +   + Y
Sbjct: 240 GVWIRPYDLRHAFALQFLRNGGQPFALQRILGHTDLTMTKRY 281


>gi|163869253|ref|YP_001610509.1| site-specific tyrosine recombinase XerC [Bartonella tribocorum CIP
           105476]
 gi|161018956|emb|CAK02514.1| integrase/recombinase XerC [Bartonella tribocorum CIP 105476]
          Length = 322

 Score =  107 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 36/269 (13%), Positives = 79/269 (29%), Gaps = 29/269 (10%)

Query: 85  GSLAVNSRISFESYFDQ----IIRKSGDFD----YRKITTKHIRSGVESRKH---TPSSA 133
             ++  +  ++E    Q    + +  G          +    +R+ +  R+    +  S 
Sbjct: 37  RRMSAQTAQAYERDTRQFLFFLCQHLGQAPTLNDLAHLRVSDLRAYLAYRRTNNVSARSL 96

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE-------DMQQFKSFW 186
            + +  +R  FK+  R+  V +     ++ PK      +P   +          Q ++  
Sbjct: 97  SRGVAGIRSFFKYLSREGIVNVPAAQLIKSPKHPKSLPKPLAIQSALHIVKQENQLENEP 156

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTGTIITVELP----DG 240
              ++       L   G+R S++     +   +        T K      V L     + 
Sbjct: 157 WINARNAAVLMLLYGCGMRISEALSLTPEQFSDPEKTSLFITGKGRKTRLVPLIKIVYEA 216

Query: 241 FMKLLAMTP---IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSAT 295
               L   P      +  F       +         +      G+    + H +R   AT
Sbjct: 217 VQNYLKCCPYPLRDNQPLFRGARGGPLQPAIIQKTVRNLRASLGLPETATPHTLRHSFAT 276

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTK 324
                G     +    G  ++   +TYT 
Sbjct: 277 HLLSRGGDLRTIQELLGHASLSTTQTYTH 305


>gi|126728048|ref|ZP_01743864.1| probable integrase protein [Sagittula stellata E-37]
 gi|126711013|gb|EBA10063.1| probable integrase protein [Sagittula stellata E-37]
          Length = 384

 Score =  107 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 54/341 (15%), Positives = 107/341 (31%), Gaps = 24/341 (7%)

Query: 17  RHGKIIYYFRKGHGRRIRLPYPH--ESTFIPA-----YMSALTGSTPKREYINSPRKKPT 69
           R G ++ Y      RRI L                  + +A  G  P  E      +K  
Sbjct: 38  RKGYVVQYRAGRRSRRISLGPSTVLTCEQARNRAISIFAAARNGEDPAAERDA--GRKAI 95

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKH 128
           T+K L   + K      +  ++   +    ++ I+   G      IT   +       +H
Sbjct: 96  TVKELAERFDKEHIAIRVKASTAKEYRRNLERFILPALGQLTVTGITRADVAKFHHDLRH 155

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPWTKEDM----QQF 182
            P  A + L  +  +F  A          NP   + +   +    R  +  ++    +  
Sbjct: 156 IPYQANRRLEVVSKMFGLAEMWGLRPDGTNPRKHIRKYPEEKRE-RFLSAAELRRIGEVL 214

Query: 183 KSFWSEG---SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVEL 237
           +   +EG       LA   L+ +G R ++       H+     +  +   K+G  +    
Sbjct: 215 REMEAEGIELPSAILAARLLILTGCRLNEIMTLKWAHVDLAERVLRLPDSKSGAKVVHLG 274

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATI 296
                 L     I +  + I         +    +++    +AGV +   H +R   A+ 
Sbjct: 275 QPVVDLLRDAQHIDENPWVITGILPGKRLSDLQPFWQRVRARAGVKDVRIHDLRHTFAST 334

Query: 297 SADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNS 336
           +  +G     +    G   V     Y    A+ +R+     
Sbjct: 335 AVASGQGLPMIGKLLGHTQVQTTARYAHLAAEPVRMAADAV 375


>gi|27817681|emb|CAD61108.1| putative site specific recombinase [Cupriavidus oxalaticus]
          Length = 402

 Score =  107 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 60/329 (18%), Positives = 109/329 (33%), Gaps = 32/329 (9%)

Query: 45  PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-II 103
             +++ +           + RK P T+  L  ++ +         +++  +E    + I+
Sbjct: 76  QEWLAEVRRGGDPGAAKTAARKAP-TVAELCVKFMEDHSKQRNKPSTQAGYEKCIKRNIV 134

Query: 104 RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA--INPCLSV 161
              G    + +T   I   ++   H P+ A +  + MR +F  A    Y     NPC  V
Sbjct: 135 PMLGRMKVQDVTRPDIAGTMKKMAHKPADANRTFSVMRKMFNLAEVWGYRPDGTNPCRHV 194

Query: 162 ERPKRKTEGIRPWTKEDMQQFKSFWS-------------EGSQPRLAFEFLLYSGLRCSD 208
                  +     + E+M +   +                    RL FEF      R S+
Sbjct: 195 PM-YPNGKATHLISDEEMGKLFRYLDYLETDGLGLDHAVLPLAIRLQFEFA----GRRSE 249

Query: 209 SCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI----NNDKQ 262
                   +   N        KTG +    L +   +LL       +   +    N+  Q
Sbjct: 250 IVTLQWDWVDLENRRVVWPDSKTGGMSK-PLSEEAYRLLCTALRQDDCPHVFPSPNHPGQ 308

Query: 263 KMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
            +   ++   +     +AGV+    HG+R  SAT  A++G      MA    KTV     
Sbjct: 309 HLTTGEYYGGWTRILKRAGVSHVGTHGIRHRSATDIANSGIPVKVGMALTAHKTVAMFMR 368

Query: 322 YTKGADR--IRLGIKNSRRISSVVDSDDP 348
           Y    D+         + R   +  +  P
Sbjct: 369 YVHTEDKPVREAAELVANRRKKITGAHRP 397


>gi|268611535|ref|ZP_06145262.1| integrase family protein [Ruminococcus flavefaciens FD-1]
          Length = 339

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 61/336 (18%), Positives = 118/336 (35%), Gaps = 45/336 (13%)

Query: 46  AYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIR 104
            YM +LT S PK         +  TL+     +       ++   ++ ++ SY +  I R
Sbjct: 10  EYMRSLTPSEPKE-------IQKFTLREWNERWLNIYC-KAIKTTTKEAYISYTENHINR 61

Query: 105 KSGDFDYRKITTKHIRSGVES--------RKHTPSSAIQFLTSMRVLFKWAVRQEYVAIN 156
             GD +  K++ + ++  + S        +  +P S       +      AV   Y+  N
Sbjct: 62  VLGDIELCKLSREDVQLFLNSLSLGIGLEKALSPKSIKNIHGILHKSLDVAVDNGYILAN 121

Query: 157 PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ- 215
           P    + PK K   +   + E++++F     +G Q    F+  L++G+R  +        
Sbjct: 122 PAKKNDLPKIKKSEVHALSVEEIKKFL-IAIKGCQMEYLFKITLFTGMRAGEIMGLTWDC 180

Query: 216 -HLQNNIFSIKTQ-------------------KTGTIITVELPDGFMKLLAMTPIGKET- 254
            + +    S+  Q                   K G    +  P   M +L      K + 
Sbjct: 181 INFEEGYISLYRQLVRIKNPKSDNYYYTFSSLKNGRSRRLYPPMFVMNMLFKMKEKKTSD 240

Query: 255 -FFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYG 312
             F N++      +      K    K G+ +   H +R   ATIS  +      L    G
Sbjct: 241 FVFCNSENNHFTHSAIYNSLKRITGKIGITDFRFHDLRHTYATISIRSDVDTMTLKENMG 300

Query: 313 WKTVD-QAETYTKGADRIRLGIKNSRRISSVVDSDD 347
             +     + Y    DR R+ ++ + +I   +  + 
Sbjct: 301 HHSAAFTLDVYGH-CDR-RMKLEGTSKIDRFITDNF 334


>gi|119385813|ref|YP_916868.1| phage integrase family protein [Paracoccus denitrificans PD1222]
 gi|119376408|gb|ABL71172.1| phage integrase family protein [Paracoccus denitrificans PD1222]
          Length = 384

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 55/343 (16%), Positives = 110/343 (32%), Gaps = 28/343 (8%)

Query: 17  RHGKIIYYFRKGHGRRIRLPYPH--ESTFIPA-----YMSALTGSTPKREYINSPRKKPT 69
           R G ++ Y      RRI L                    +A  G  P  E      +K  
Sbjct: 38  RKGYVVQYRAGRRSRRISLGPATVLTCEQARNRAISIVAAARNGEDPAAERDA--GRKTI 95

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKH 128
           T++ L   + +      +  ++   +     + I+   G      IT   +       +H
Sbjct: 96  TVRELAERFDREHIAIRVKASTAGEYRRNLRRFILPALGQLTVTGITRADVAKFHHDLRH 155

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPWTKEDM----QQF 182
            P  A + L  +  +F +A          NP   + +   +    R  +  ++    +  
Sbjct: 156 IPYQANRCLEVVSKMFGYAEMWGLRPDGTNPRKHIRKYPEEKRE-RFLSAAELRRIGEVL 214

Query: 183 KSFWSEG---SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVEL 237
           +   +EG   +   LA   L+ +G R ++       H+        +   KTG  I V L
Sbjct: 215 REMETEGIELTSAILAARLLILTGCRLNEIMTLQWDHVDLEGRALRLPDSKTGAKI-VHL 273

Query: 238 PDGFMKLLAMTPIGKETFFI---NNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSA 294
               ++LL   P  K   ++       ++++      W + +A     +   H +R   A
Sbjct: 274 GQPVVELLRDAPRIKGNPWVIPGTLPGKRLS-DLQPFWQRVRARAGVKDVRIHDLRHTFA 332

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNS 336
           + +  AG     +    G         Y    A+ +++     
Sbjct: 333 STAVAAGQGLPMIGKLLGHTQAQTTARYAHLAAEPVKMAADAV 375


>gi|229193382|ref|ZP_04320331.1| Site-specific recombinase, phage integrase [Bacillus cereus ATCC
           10876]
 gi|228590096|gb|EEK47966.1| Site-specific recombinase, phage integrase [Bacillus cereus ATCC
           10876]
          Length = 327

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 39/298 (13%), Positives = 99/298 (33%), Gaps = 22/298 (7%)

Query: 49  SALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD 108
             +    PK E +   +     ++  I  +   A    +   +   +  ++    ++   
Sbjct: 9   RIVKRRLPKVELLKVDKTDSLEVEQTIKIFSHIAKQEGMRERTISDYAKFYRYFTKEVEV 68

Query: 109 FDYRKITTKH---IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165
            D RK+   H       +  +  +P +    L+ ++ LF+   + EY+  NP ++  + +
Sbjct: 69  TDLRKMNADHIGLYIDSLLEKGLSPVTVNIRLSGLKSLFRRLEKHEYIKENPAVNFSKLR 128

Query: 166 RKTEGIRPWTKEDMQQFKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--N 219
                I  +    +++           G +  +A   +L+ G+R ++     +  +   N
Sbjct: 129 TDESKIYTFNNSQIKRLFRVVDTTSYAGFRDYVAMLLMLHCGMRVNEVAALEINDIDFDN 188

Query: 220 NIFSIKTQKTGTIIT--VELPDGFMKLLAMTPIGKE-------TFFINNDKQKMNATQFS 270
            +  +   K     +  + +    M  +                 F+  D ++++     
Sbjct: 189 GVILLAGAKNKNRRSRSIPMSKRIMGEIKQLITESMDYFEEVKHVFLTQDGRRLDNDIIR 248

Query: 271 IWFKAKATKAGVNK----SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
                    +G+ +    S H +R   A      G + + LM   G K +     Y +
Sbjct: 249 KRMYTYGRLSGLYRECRVSPHSLRHTFACNYLRDGGSVNALMHILGHKDIASTMRYVR 306


>gi|104784270|ref|YP_610768.1| site-specific tyrosine recombinase XerC [Pseudomonas entomophila
           L48]
 gi|123380751|sp|Q1I301|XERC_PSEE4 RecName: Full=Tyrosine recombinase xerC
 gi|95113257|emb|CAK17985.1| site-specific tyrosine recombinase, integrase family [Pseudomonas
           entomophila L48]
          Length = 299

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 35/259 (13%), Positives = 86/259 (33%), Gaps = 19/259 (7%)

Query: 85  GSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLT 138
             ++ ++ +++    +++I      G   +  +  + +R  V  +     +  S  + L+
Sbjct: 16  RQVSGHTLLAYRRDLEKVIEFCNNQGIAGWDALQVQQLRQLVARQHHHGQSSRSLARLLS 75

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW-TKEDMQQFKSFWS---EGSQPRL 194
           ++R L+++  R+     +P   +  PK +    +   T   +Q             + + 
Sbjct: 76  AVRGLYRYLNREGLCQHDPANGLAPPKGERRLPKTLDTDRALQLLDGGVDDDFIARRDQA 135

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLA------- 246
             E    SGLR S+     ++HL           K G    + +     + L        
Sbjct: 136 ILELFYSSGLRLSELAGLDLEHLDLTGGLVQVLGKGGKSRVLPVGRKACEALQEWFRLRG 195

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAK-ATKAGVNKSAHGVRKFSATISADAGATAH 305
           +        FI     +++     +  K     + G +   H +R   A+   ++     
Sbjct: 196 IAAPRDGAVFITRQGNRLSTRAIQMRVKTFGERELGQHLHPHMLRHSFASHLLESSQDLR 255

Query: 306 ELMATYGWKTVDQAETYTK 324
            +    G   +   + YT 
Sbjct: 256 AVQEMLGHADISTTQIYTH 274


>gi|324113623|gb|EGC07598.1| phage integrase [Escherichia fergusonii B253]
          Length = 231

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 39/216 (18%), Positives = 72/216 (33%), Gaps = 19/216 (8%)

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
             +SA    +++  +F+ A+ + +VA NP  +    K +    R    E +  + +    
Sbjct: 10  KAASAKLIRSTLVDVFREAIAEGHVATNPATATRTAKSEVRRSRLTANEYVAIYHAAEPL 69

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP---------- 238
            +  RLA +  + +G R  D CR     + +N   I+  KTG  + + L           
Sbjct: 70  PTWLRLAMDLAVVTGQRVGDLCRMKWSDINDNHLHIEQSKTGAKLAIPLTLTIDALNISL 129

Query: 239 -DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NKSAHGVRKF 292
            D   K         ET   +     ++    S +F      +G+       + H +R  
Sbjct: 130 ADTLQK--CREASSSETIIASKHHDPLSPKTVSKYFTKARNASGLSFDGDPPTFHELR-S 186

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
            +                 G K+   A  Y     R
Sbjct: 187 LSARLYRNQIGDKFAQRLLGHKSDSMAARYRDSRGR 222


>gi|315121780|ref|YP_004062269.1| site-specific tyrosine recombinase XerD [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495182|gb|ADR51781.1| site-specific tyrosine recombinase XerD [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 318

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 41/270 (15%), Positives = 87/270 (32%), Gaps = 30/270 (11%)

Query: 85  GSLAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
            + +VN+  S++S  +++                       + +  RK   SS  + +++
Sbjct: 26  RAASVNTLTSYKSDLEEVQLFLDDDDLLLSKASSDNLIAYLNHLSQRKLKASSQRRKISA 85

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS--------- 190
           +R  + +   +     NP  +++ PK+     +   K  +          S         
Sbjct: 86  IRQFYNFLCCEGLRKDNPSETLQFPKKNHTLPKTLHKNAIADLLKQAKIESEDPSPGQWK 145

Query: 191 --QPRLAFEFLLYSGLRCSDSCRA--GVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
             +  L  E L  +G+R S+         +L+  I  IK +       +  P     L  
Sbjct: 146 RIRMFLLIELLYSTGMRVSELVTLSSHTLNLEERIMIIKGKGNRERFVIFSPSSLCALQM 205

Query: 247 MTP-------IGKETFFI--NNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSA 294
                          +    +     ++   F+   K  A++A +   N S H +R   A
Sbjct: 206 YKKMCSTMEMTKNSPWLFPSSTKTGHLSRQVFARDLKELASRASIQTKNISPHIIRHAFA 265

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324
           +   + GA    +    G   +   + YT 
Sbjct: 266 SHLLEGGADLRTIQILLGHIDISTTQIYTH 295


>gi|229004126|ref|ZP_04161927.1| integrase/recombinase [Bacillus mycoides Rock1-4]
 gi|228756987|gb|EEM06231.1| integrase/recombinase [Bacillus mycoides Rock1-4]
          Length = 316

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 42/282 (14%), Positives = 95/282 (33%), Gaps = 31/282 (10%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVESRK 127
           L++ + E+++   + +L+  +   + +  ++      +    D R I    +++ +   K
Sbjct: 13  LRFAMKEFQEEKEYNNLSHRTIEVYMATLNEFRNFCSEQEIVDLRDIREATVKAYLRYCK 72

Query: 128 HTPSSA----IQFLTSMRVLFKWAVRQEYVAI--NPCLSVERPKRKTEGIRPWTKEDMQQ 181
            T  +        L  +R+ F +   +E +    NP   ++  K  T+ I  +T   +QQ
Sbjct: 73  KTRGNGVVTCNSKLHHLRIFFNYWQNEEVIEHKDNPVRKLKPAKEDTK-IEVFTDYHIQQ 131

Query: 182 FKSFWSE---------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGT 231
              ++           G +       LL +G+R  +      + +   N   +   K   
Sbjct: 132 MLRYYRRLKTRDKSFFGYRDHAIIVLLLSTGIRLGELVNIQWKDIDLVNQTVVLFGKARR 191

Query: 232 IITVELPDGFMKLLA--MTPIGKE------TFFINNDKQKMNATQFSIWFKAKATK---A 280
             ++ + D   K +      + KE        F + + +++      + F+  +      
Sbjct: 192 QQSIPITDKLTKEICEWRIFVEKELGSLPQYLFTSREGKQLTPNAVKLIFQRLSKVMNFK 251

Query: 281 GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
            V  S H  R   A      G     L        +   E Y
Sbjct: 252 DVRLSCHTFRHSFAHRCIMQGMDVFTLQKLLRHSNLRMTERY 293


>gi|4186110|emb|CAA71790.1| putative integrase [Cupriavidus necator]
          Length = 401

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 60/329 (18%), Positives = 109/329 (33%), Gaps = 32/329 (9%)

Query: 45  PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-II 103
             +++ +           + RK P T+  L  ++ +         +++  +E    + I+
Sbjct: 75  QEWLAEVRRGGDPGAAKTAARKAP-TVAELCVKFMEDHSKQRNKPSTQAGYEKCIKRNIV 133

Query: 104 RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA--INPCLSV 161
              G    + +T   I   ++   H P+ A +  + MR +F  A    Y     NPC  V
Sbjct: 134 PMLGRMKVQDVTRPDIAGTMKKMAHKPADANRTFSVMRKMFNLAEVWGYRPDGTNPCRHV 193

Query: 162 ERPKRKTEGIRPWTKEDMQQFKSFWS-------------EGSQPRLAFEFLLYSGLRCSD 208
                  +     + E+M +   +                    RL FEF      R S+
Sbjct: 194 PM-YPNGKATHLISDEEMGKLFRYLDYLETDGLGLDHAVLPLAIRLQFEFA----GRRSE 248

Query: 209 SCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI----NNDKQ 262
                   +   N        KTG +    L +   +LL       +   +    N+  Q
Sbjct: 249 IVTLQWDWVDLENRRVVWPDSKTGGMSK-PLSEEAYRLLCTALRQDDCPHVFPSPNHPGQ 307

Query: 263 KMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
            +   ++   +     +AGV+    HG+R  SAT  A++G      MA    KTV     
Sbjct: 308 HLTTGEYYGGWTRILKRAGVSHVGTHGIRHRSATDIANSGIPVKVGMALTAHKTVAMFMR 367

Query: 322 YTKGADR--IRLGIKNSRRISSVVDSDDP 348
           Y    D+         + R   +  +  P
Sbjct: 368 YVHTEDKPVREAAELVANRRKKITGAHRP 396


>gi|17544771|ref|NP_518173.1| site-specific tyrosine recombinase XerC [Ralstonia solanacearum
           GMI1000]
 gi|34222938|sp|Q8Y3C8|XERC1_RALSO RecName: Full=Tyrosine recombinase xerC 1
 gi|17427060|emb|CAD13580.1| probable tyrosine recombinase xerc 1 protein [Ralstonia
           solanacearum GMI1000]
          Length = 329

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 50/290 (17%), Positives = 92/290 (31%), Gaps = 42/290 (14%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQI----IRKSGDFDYRKITTKHIRSGVESR--- 126
           I  Y  +  +   L+ ++  S+      +     R +   D  ++   HIR  +      
Sbjct: 20  IGAYLDALKFERKLSQHTLASYARELAVLQQLGARFAAGIDLMRLQPHHIRRMMAQLHGG 79

Query: 127 KHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQ 181
             +  S  + L++ R  ++W A+R   V  NP   +  PK      +  + E     M+Q
Sbjct: 80  GLSGRSIARALSAWRGWYQWLALRDAAVTANPVDGIRAPKSPKRLPKALSVEQAVALMEQ 139

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN------IFSIKTQ------KT 229
                 E  + R   E     GLR S+     ++H Q           ++ +      K 
Sbjct: 140 LPGDDPEAVRDRAVNELFYSCGLRLSELVGLDLRHAQAGDYASASWLDLEAREVTVLGKG 199

Query: 230 GTIITVEL--------------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKA 275
               TV +                   +     P      F++   +++   Q     K 
Sbjct: 200 NKRRTVPVGSKAAEALAAWLAVRPQLAQ-PDAAPEDAHALFLSARGKRLAQRQIQTRMKR 258

Query: 276 KATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
            A  AGV      H +R   AT    +      +    G  ++   + YT
Sbjct: 259 NAIAAGVPADVHPHVLRHSFATHMLQSSGDLRAVQELLGHASIASTQVYT 308


>gi|170693977|ref|ZP_02885133.1| tyrosine recombinase XerC [Burkholderia graminis C4D1M]
 gi|170141049|gb|EDT09221.1| tyrosine recombinase XerC [Burkholderia graminis C4D1M]
          Length = 307

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 47/291 (16%), Positives = 90/291 (30%), Gaps = 33/291 (11%)

Query: 73  WLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KH 128
             I+ Y  +  H   L+ ++   +    +Q+   +       +T   +R  V        
Sbjct: 5   DFIAAYLSNLEHERRLSAHTLRGYTHELEQLRLLAKGRPLESLTAVDVRGAVSRAHAGGL 64

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS- 187
           T  S    L++ R  ++W   +  +  NP  +V  PK+     +  + +D  +       
Sbjct: 65  TARSISHRLSAWRAFYRWLAGRIDLPANPVATVRAPKQPKALPKALSVDDANRLMESPPA 124

Query: 188 ---EGSQPRLAFEFLLYSGLRCSDSCRA-------------GVQHLQNNIFSIKTQKTGT 231
              EG +     E    SGLR S+                 G   L +    +   K   
Sbjct: 125 ASAEGLRDHAMLELFYSSGLRLSELVGLDARFADADGYRSAGWLKLDSAEVEV-LGKGKR 183

Query: 232 IITVELPDGFMKLLAMTPIGKE--------TFFINNDKQKMNATQFSIWFKAKATKAGVN 283
              V +    +  L      ++          F++    +++        K  A  AG+ 
Sbjct: 184 RRIVPVGSKALTALNAWLAVRDQMVKHDPHPLFLSARGNRLSPNVVRERVKRAALLAGIP 243

Query: 284 K--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
                H +R   AT    +      +    G  ++   + YT G D   L 
Sbjct: 244 ANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASITATQVYT-GLDFQHLA 293


>gi|167770641|ref|ZP_02442694.1| hypothetical protein ANACOL_01987 [Anaerotruncus colihominis DSM
           17241]
 gi|167667236|gb|EDS11366.1| hypothetical protein ANACOL_01987 [Anaerotruncus colihominis DSM
           17241]
          Length = 339

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 48/236 (20%), Positives = 90/236 (38%), Gaps = 17/236 (7%)

Query: 125 SRKHTPSSAIQFLTSMRVLFKWA-VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
            R++   +  + ++S+R  F +  V+   + INP  ++E P  K    R  T E+  +  
Sbjct: 90  ERENNAKTRSRKVSSLRSFFNYLTVKSGLLKINPIENLEVPSVKKSVPRYLTLEECLELL 149

Query: 184 SFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241
           +     S  R        L  G+R S+     +Q ++ +   +   K      V + D  
Sbjct: 150 THIESSSYERDFCIATLFLNCGMRLSELVGINLQDIRGDTIRL-LGKGNKERIVYINDAC 208

Query: 242 MKLL------AMTPIG---KETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGV 289
            + L       MTP     ++  F+++   +++  +          +AG+     S H +
Sbjct: 209 KRALTTYLAVRMTPANVKYRDALFLSSRGTRISPRRVEQIIARCLEQAGLAGQGYSPHKL 268

Query: 290 RKFSATISADAGA-TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
           R  +AT+    G      L    G  ++   E YT  +DR       S  +SSV  
Sbjct: 269 RHTAATLMYQHGGVDIRVLKEILGHASLSTTEIYTHISDRQMEKAAKSSPLSSVAP 324


>gi|68249255|ref|YP_248367.1| site-specific tyrosine recombinase XerC [Haemophilus influenzae
           86-028NP]
 gi|319775473|ref|YP_004137961.1| site-specific tyrosine recombinase [Haemophilus influenzae F3047]
 gi|81336341|sp|Q4QMP0|XERC_HAEI8 RecName: Full=Tyrosine recombinase xerC
 gi|68057454|gb|AAX87707.1| site-specific recombinase XerC [Haemophilus influenzae 86-028NP]
 gi|317450064|emb|CBY86278.1| site-specific tyrosine recombinase [Haemophilus influenzae F3047]
          Length = 295

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 39/260 (15%), Positives = 88/260 (33%), Gaps = 21/260 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRKHTPSSAIQFLT 138
             ++ ++  +++   D  I+     D    T       + I +  + +     S    L+
Sbjct: 16  RQMSPHTITNYQHQLDATIKILAQQDIHSWTQVTPSVVRFILAESKKQGLKEKSLALRLS 75

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS---FWSEGSQPRLA 195
           ++R    + V+Q  + +NP   +  PK+     +    E +QQ  +         + R  
Sbjct: 76  ALRRFLSFLVQQGELKVNPATGISAPKQGWHLPKNMDGEQIQQLLANDSKEPIDIRDRAI 135

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLLA 246
            E +  SGLR S+     +  +   +  ++    G    V          + +       
Sbjct: 136 LELMYSSGLRLSELQGLDLNSINTRVREVRVIGKGNKERVVPFGRYASHAIQEWLKVRAL 195

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATA 304
             P   E  F++    +++        +    + G+N   + H +R   AT   +A +  
Sbjct: 196 FNP-KDEALFVSQLGNRISHRAIQKRLETWGIRQGLNSHLNPHKLRHSFATHMLEASSDL 254

Query: 305 HELMATYGWKTVDQAETYTK 324
             +    G   +   + YT 
Sbjct: 255 RAVQELLGHSNLSTTQIYTH 274


>gi|166032543|ref|ZP_02235372.1| hypothetical protein DORFOR_02258 [Dorea formicigenerans ATCC
           27755]
 gi|166026900|gb|EDR45657.1| hypothetical protein DORFOR_02258 [Dorea formicigenerans ATCC
           27755]
          Length = 400

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 59/369 (15%), Positives = 116/369 (31%), Gaps = 68/369 (18%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEY 78
           G+ I  F    G+R  L     +        A+     + E+  +   +  TL      +
Sbjct: 20  GRYIARFTSKTGKRKTLYDFKLNELKRKLREAVY----EDEHGLNGNGESITLNAWYVTW 75

Query: 79  RKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAI 134
            +     ++ + +     SY++ ++    G    + I T H++  +     +     +  
Sbjct: 76  TELYKKKTVKMTTIYKNHSYYNSRVKNSIGKMYLQDIKTYHVQKFLNDLIDSGLAHGTVS 135

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
                +  +F  AV  EY+  NPC+ VE PK   +  R  T+E+ ++F +F S       
Sbjct: 136 NIRFMLSDMFDKAVLSEYIRKNPCIGVEMPKEVKKERRVLTREEQEKFFTFASSYIHI-N 194

Query: 195 AFEFLLYSGLRCSDSCRAGVQH----------------------LQNNIFSIKTQKT-GT 231
             +F + +G R  +      +                       ++ + F   T KT  +
Sbjct: 195 VLKFAVTTGCRIGEVLGLKWEDCDFGKREITINKTIHYSKASSPVEGSKFFYTTAKTISS 254

Query: 232 IITVELPDGFMKLLAMTPIGK------------------ETFFINNDKQKMNATQFSIWF 273
              + + D   ++L    I +                     F  +D   +     +   
Sbjct: 255 NRVIPMTDEVYEILQNQKIKQTEQKMWKRSIWKQHKEFQNLVFTCSDGSPVYYYNVNSAI 314

Query: 274 KAKATK--------AGVNK---------SAHGVRKFSATISADAGATAHELMATYGWKTV 316
           K    K        A   K         + H +R   AT   + G     +    G  T+
Sbjct: 315 KDYVAKINVIEIELAKEEKREPKIFELFTCHTLRHTYATRCYENGVDQQVVQKLLGHSTL 374

Query: 317 DQ-AETYTK 324
               + YT 
Sbjct: 375 AMTTDLYTH 383


>gi|330430524|gb|AEC21858.1| site-specific tyrosine recombinase XerC [Pusillimonas sp. T7-7]
          Length = 316

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 44/277 (15%), Positives = 85/277 (30%), Gaps = 37/277 (13%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES---RKHTPSSAIQFLTSMR 141
              ++++   +      +I+   D      T  HIR  V     +   P S  + L + R
Sbjct: 19  RRYSIHTLSGYRQDLHHLIQCHADLKLDHCTESHIRQAVARLHGQGLQPRSLARALAAWR 78

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS-------QPRL 194
             F+W   Q  +  NP   V  PK      +  + E  Q         +       + + 
Sbjct: 79  GFFQWWAPQAGMESNPVAGVRAPKIPRSLPKALSVEQTQVLLDRPQLPAPDTAIDCRDQA 138

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQ------------NNIFSIKTQKTGTIITVELPDGFM 242
            FE L  SGLR ++      ++ +            +   +I   K G    V L    +
Sbjct: 139 MFEVLYSSGLRLAELVSLDWRYARTGGYESQSWVQLDEQEAIVKGKGGKTRNVPLGGKAI 198

Query: 243 KLLAMT-------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAH 287
             +                P      F+    ++++     +     AT  G+  +   H
Sbjct: 199 AAIQTWLQKRDQLLGGSSDPDTAAALFLGARGKRISPRVVQLQLNKLATLVGLPVHVHPH 258

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            +R   A+    +      +    G   +   + YT+
Sbjct: 259 SLRHSFASHMLQSAQDLRAVQELLGHANISTTQIYTR 295


>gi|50954349|ref|YP_061637.1| site-specific tyrosine recombinase XerD [Leifsonia xyli subsp. xyli
           str. CTCB07]
 gi|50950831|gb|AAT88532.1| integrase [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 301

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 38/276 (13%), Positives = 88/276 (31%), Gaps = 27/276 (9%)

Query: 75  ISEYRKSAH-WGSLAVNSRISFESYFD------QIIRKSGDFDYRKITTKHIRSGVESRK 127
           +  Y +       L+ N+  ++            + + +        T       + +R 
Sbjct: 7   VDAYLRHVAIERGLSANTVAAYRRDLAVYAGWLAVEQVTQTAAVTPATVSAYLQHLATRG 66

Query: 128 HTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
            +P +A    + L+++R   ++ + +  V ++    +  PK  +   +    + +    +
Sbjct: 67  ESPLTASSLARMLSTVRSFHRFLLEEGRVTVDAAHDIRPPKLPSRLPKAIGVDQVAALLA 126

Query: 185 FWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
                     + +   E +  +G R S++    V  + +      T K      V L   
Sbjct: 127 ATDGDDLADLRDKALLELMYATGARVSEAVGLNVDDVIDTDVVRLTGKGAKQRIVPLGSY 186

Query: 241 FMK-----LLAMTPI------GKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAH 287
                   L+   P            F+     +++     +  +A A +A +    S H
Sbjct: 187 ARAAVSAYLVRARPTLSTRGRATPALFLGMRGARLSRQNVWLIIRAAADRADLTVEVSPH 246

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
            +R   AT     GA    +    G  +V   + YT
Sbjct: 247 ILRHSFATHLLAGGADVRVVQELLGHSSVATTQLYT 282


>gi|53804979|ref|YP_113355.1| integrase/recombinase XerC [Methylococcus capsulatus str. Bath]
 gi|53758740|gb|AAU93031.1| integrase/recombinase XerC [Methylococcus capsulatus str. Bath]
          Length = 304

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 45/289 (15%), Positives = 98/289 (33%), Gaps = 25/289 (8%)

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGV 123
            P +L+ L  +Y         + ++  ++                  +  +    IR+ V
Sbjct: 2   APDSLEQL-DDYLDRLA-RRASRHTHAAYRRDLCAFHAYCDSVNLAGWADVDAARIRAYV 59

Query: 124 ESRKHT----PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
            +R H       S  + L ++R  F   +++  + +NP  +V  P+      R    + +
Sbjct: 60  GTRHHRGELSARSLQRLLAAIRGFFDDLLKKRLLDVNPARAVRPPRSGRRLPRLLDVDAV 119

Query: 180 QQFKSFWS---EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIIT 234
                  +     ++ R  +E    SGLR S+     V  +        ++  K G    
Sbjct: 120 AGLLDAPADDRLETRDRAMWELFYSSGLRLSELVGLDVVDVDFGAGSVFVRKGKGGKARY 179

Query: 235 VELPDGFMKLLAM--------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS- 285
           V +    ++ +          T  G+   F++   +++      +  +    K G+++  
Sbjct: 180 VPVGAKALEAIGAWLEARRVLTGAGQPALFLSRQGRRIAPRTVEMRLERWRAKLGLSERV 239

Query: 286 -AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
             H +R   A+   +A      +    G  T+   + YT   D  RL  
Sbjct: 240 HPHMLRHSFASHMLEASGDLRAVQELLGHATLATTQIYTH-VDFQRLAA 287


>gi|94985803|ref|YP_605167.1| phage integrase [Deinococcus geothermalis DSM 11300]
 gi|94556084|gb|ABF45998.1| phage integrase [Deinococcus geothermalis DSM 11300]
          Length = 285

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 38/256 (14%), Positives = 91/256 (35%), Gaps = 14/256 (5%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSSAIQFLTSMRVLF 144
             +  +  ++ +    +     +   + +  + + +   +  H  P++  +  T++    
Sbjct: 18  KRSPQTVRAYRADLRHLTTWLEETG-QVLNGEGLDAYFAAHLHWAPATRNRKQTALERFC 76

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS-QPRLAFEFLLYSG 203
            WA+++E +  +P L +ERP       R   +E++++  +       +  L F  +  +G
Sbjct: 77  HWALQRELLDRDPTLHLERPSLPPPHPRGLRREEIERIFAVIPAEQVRDALLFRLVFETG 136

Query: 204 LRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDG------FMKLLAMTPIGKETF 255
           LR  ++    V+ L        +     G+     L D         + L          
Sbjct: 137 LRIGEALGVHVEDLDLTRGDEHLTVLGKGSRRRTVLLDDPKLVNMLRRYLRTLGYTHGPL 196

Query: 256 FI---NNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYG 312
           F    N     +        ++  A +AGV  + H +R   AT   + G +   +    G
Sbjct: 197 FQATKNGRGGPLRYQSVQERWQGYAERAGVTCTLHQLRHSHATELVNGGVSLATIRKRLG 256

Query: 313 WKTVDQAETYTKGADR 328
            + +     Y + +D+
Sbjct: 257 HQHIQTTLRYAEVSDQ 272


>gi|310764968|gb|ADP09918.1| site-specific tyrosine recombinase XerC [Erwinia sp. Ejp617]
          Length = 351

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 46/289 (15%), Positives = 103/289 (35%), Gaps = 32/289 (11%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFE---SYFDQIIRKSGDFDYRKITTKHIRSGV--- 123
           TL+ L   +         +  +   +      F       G     +++   + S     
Sbjct: 20  TLRQLAESWLSHLAAAGRSPRTVQGYGERVRAFLAWCEPRGIRYAPQVSLAVLESYQRWL 79

Query: 124 ------ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI-RPWTK 176
                 + ++   +S +  LT++R+LF+W +++  +  NP   +  PK +     + +++
Sbjct: 80  QGYRKADGKQLVVNSQLGVLTAIRMLFRWLLQRHVILYNPAELLALPKEERRLPAQVFSE 139

Query: 177 ED----MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTG 230
           ++    +Q   +    G + R   E L  SG+R S+     +  +     + +++  K G
Sbjct: 140 DETRRVLQSLDAGTPPGLRNRAILELLWSSGIRRSELAGLLLSDVDFTRGVVNVRRGKGG 199

Query: 231 TIITVE--------LPDGFMKLLAMTPI--GKETFFINNDKQKMNATQFSIWF-KAKATK 279
               V         L      +             FI++    +     +    +A  + 
Sbjct: 200 KDRVVPVGHAALIWLGRYLQDVRPRLAQRFDSGHLFISHKGTGLAHGTLTAMAGRAIRSG 259

Query: 280 AGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           A + K+   H  R   AT   + GA    + A  G + ++  + YT+ A
Sbjct: 260 AHLKKAGACHIFRHSMATQMLENGADTRHIQAILGHEKLETTQIYTRVA 308


>gi|315648604|ref|ZP_07901701.1| integrase family protein [Paenibacillus vortex V453]
 gi|315275983|gb|EFU39331.1| integrase family protein [Paenibacillus vortex V453]
          Length = 305

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 48/306 (15%), Positives = 100/306 (32%), Gaps = 32/306 (10%)

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF--------------DQII 103
           RE      +   T++  I           L   +   + S                ++II
Sbjct: 2   RETPGISEQGDQTIQDFIHALTTH---EDLNPKTLKEYASDLKHFIGWFETAYHQEEEII 58

Query: 104 RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163
            +  D     +T     +  +  +  P++  + L +++  F+WAV +  +  +P   V+ 
Sbjct: 59  FRIEDVATPTLTRYR-EAAQKIMELKPATINRRLITLKRFFEWAVSESRIRRDPSKPVKL 117

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEG--SQPRLAFEFLLYSGLRCSDSCRAGVQHL---- 217
              +    R  T ++     +    G   + +     + ++GLR  + C      +    
Sbjct: 118 VPEEKVSPRQMTDKEEAALVAAAEHGGSLRDQTILIVMFHTGLRSMEVCDLAPGDIQIGK 177

Query: 218 QNNIFSIKTQKTGTIITVELPD----GFMKLLAMTPIGKETFFIN-NDKQKMNATQFSIW 272
           ++   ++++ K      V L         K LA  P      F +     ++        
Sbjct: 178 RSGQLTVRSGKRNKQREVPLNATCRVALEKYLAELPPHSPFLFPSEKTGDRLTERALRHL 237

Query: 273 FKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            +     A +   SAH +R     + A+     H L    G  ++D    Y K A R  L
Sbjct: 238 IQKYMKAARLEGLSAHDLRHRFGYVMAEN-TPLHRLAQIMGHDSLDTTMIYVK-ATRADL 295

Query: 332 GIKNSR 337
             +  +
Sbjct: 296 QAEVEK 301


>gi|288556218|ref|YP_003428153.1| integrase family protein [Bacillus pseudofirmus OF4]
 gi|288547378|gb|ADC51261.1| integrase family protein [Bacillus pseudofirmus OF4]
          Length = 362

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 53/324 (16%), Positives = 99/324 (30%), Gaps = 60/324 (18%)

Query: 75  ISEYRKSAHWGSLAVNSRI----SFESYFDQIIRKSGD----------FDYRKITTKHIR 120
           I +Y  S      +  +       +  +F  + R S D           D+ +I    I 
Sbjct: 39  IQQYLISRVSLGYSKQTIQRYIYDYHYFFHYVKRVSEDPSFQPAAVTLKDFLQIEKAAIE 98

Query: 121 SGVESRK----HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
             +        + P +  + +++++ LF + V++     NP L VERPK         T 
Sbjct: 99  HYITYLSLEVENEPRTINRKISALQSLFDYLVKKGETTTNPVLGVERPKVGKRDPVFLTI 158

Query: 177 EDMQQFKSFWSEGS---------------QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NN 220
            + Q       + S               +       L+ SGLR S+     ++      
Sbjct: 159 NEAQLLLKAVKDTSSLSFRQKKYAEKLLARDYAVIYLLISSGLRISELANVKMKDFDKEE 218

Query: 221 IFSIKTQKTGTIITVELP----DGFMKLLAMTPIGK------ETFFI------NNDKQKM 264
                  K     ++ L     D     L   PI        +  FI          +++
Sbjct: 219 NILKVQGKGNKERSIPLSYETIDVLTYYLDSLPIKSRPKQSEDHLFIGYDFQSQEYTKQV 278

Query: 265 NATQFSIWFKAKATKAG--------VNKSAHGVRKFSATISADAGATAHELMATYGWKTV 316
             +      + +  +A            +AH +R   AT     G     + +  G ++V
Sbjct: 279 TVSALQKMIQRQLHRAKQYAPSLQHKTITAHKLRHSFATALVAKGVDVLTVQSLLGHESV 338

Query: 317 DQAETYTKGADRIRLGIKNSRRIS 340
              + Y    D  R   +   R+S
Sbjct: 339 ATTQVYAHVQDDARK--EAITRLS 360


>gi|269795657|ref|YP_003315112.1| tyrosine recombinase XerC subunit [Sanguibacter keddieii DSM 10542]
 gi|269097842|gb|ACZ22278.1| tyrosine recombinase XerC subunit [Sanguibacter keddieii DSM 10542]
          Length = 310

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 40/273 (14%), Positives = 82/273 (30%), Gaps = 27/273 (9%)

Query: 85  GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGVESRKHT---PSSAIQFLT 138
             L+ ++  ++ S    +     + G      +    +R  +          S+  +   
Sbjct: 28  RGLSEHTVRAYASDLAGLSSFAHQVGAGPLAAVGLDTLRGWLAQMAGRDLARSTVARRGA 87

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW--------SEGS 190
           ++R  + WAVR   V  +P + +  P            +                     
Sbjct: 88  AVRAFYGWAVRSGRVGSDPSVRLGSPTVSKTLPTVLAVDSATALMETARTAAVDGDPAAL 147

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTP 249
           +     E L  +G+R  +     +Q +  +  S++   K      V         L    
Sbjct: 148 RAWACVELLYATGVRVGELVSLDLQDVDLDTRSVRVVGKGDKERVVPFGVPAATALRSWI 207

Query: 250 ----------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISA 298
                      G    F+    Q+    Q        +  A V+  + H +R  +AT   
Sbjct: 208 EDGRPGLERGSGATAVFLGQRGQRWGQRQVRETVHRLSAAASVDDVAPHDLRHSAATHLL 267

Query: 299 DAGATAHELMATYGWKTVDQAETYTK-GADRIR 330
           + G+    +    G  T+   + YT   A+R+R
Sbjct: 268 NGGSDLRTVQEVLGHSTLSTTQRYTHVSAERLR 300


>gi|259909787|ref|YP_002650143.1| site-specific tyrosine recombinase XerC [Erwinia pyrifoliae Ep1/96]
 gi|224965409|emb|CAX56941.1| site-specific tyrosine recombinase [Erwinia pyrifoliae Ep1/96]
          Length = 351

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 44/289 (15%), Positives = 99/289 (34%), Gaps = 32/289 (11%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFE---SYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
           TL+ L   +         +  +   +      F       G     +++   + +     
Sbjct: 20  TLRQLAESWLAHLVVAGRSPRTVQGYRERVRAFLSWCEPRGITYAPQVSLAVLEAYQRWL 79

Query: 127 KHTPSSAIQ---------FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI-RPWTK 176
           +    +  +          LT++R+LF+W +++  +  NP   +  PK +     + +++
Sbjct: 80  QGYRRADGKQLVVNSQLGVLTAIRMLFRWLLQRHVILYNPAELLALPKEERRLPAQVFSE 139

Query: 177 ED----MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTG 230
            +    +Q   +    G + R   E L  SG+R S+     +  +     + +++  K G
Sbjct: 140 AETRRVLQSLDAGTPPGLRNRAILELLWSSGIRRSELAGLLLSDVDFTRGVVNVRRGKGG 199

Query: 231 TIITVEL----PDGFMKLLA------MTPIGKETFFINNDKQKMNATQFSIWF-KAKATK 279
               V +         + L                FI++    +     +    +A    
Sbjct: 200 KDRVVPVGHAALMWLGRYLKDVRPRLAQRFDSGHLFISHKGTGLAHGTLTAMAGRAIREG 259

Query: 280 AGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           A + K+   H  R   AT   + GA    + A  G + ++  + YT+ A
Sbjct: 260 AHLKKAGACHIFRHTMATQMLENGADTRHIQAILGHEKLETTQIYTRVA 308


>gi|190575908|ref|YP_001973753.1| site-specific tyrosine recombinase XerC [Stenotrophomonas
           maltophilia K279a]
 gi|190013830|emb|CAQ47468.1| putative integrase/recombinase [Stenotrophomonas maltophilia K279a]
          Length = 298

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 33/255 (12%), Positives = 80/255 (31%), Gaps = 15/255 (5%)

Query: 85  GSLAVNSRISFESYFDQII-----RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
             ++ ++  ++    D +      R            +   +    R  +  S  + L++
Sbjct: 15  RRMSAHTLDAYRRDLDALSVWAEPRGVAVEALDADALRQFVADEHRRGLSAKSLQRRLSA 74

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS---QPRLAF 196
            R  + W ++   + ++P  +++ P+      +    ++  Q      EG    + R   
Sbjct: 75  CRSFYAWLLKHGRIEVSPAATLKAPRAPRRLPQVLDADEAVQLVELEPEGELGRRDRALL 134

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-----VELPDGFMKLLAMTPIG 251
           E    SGLR S+ C    + L  +   +     G             +      A +  G
Sbjct: 135 ELFYSSGLRLSEVCALTWRDLDFDSGLVNVLGKGNRQRRVPFGRPAREALQAWRAESGGG 194

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMA 309
             +         ++     I  +  A + G+  +   H +R   A+   ++      +  
Sbjct: 195 PASPVFPGRNGPISQRAVQIRIRQLAQRQGLFKHVHPHMLRHSFASHILESSGDLRGVQE 254

Query: 310 TYGWKTVDQAETYTK 324
             G   +   + YT 
Sbjct: 255 LLGHADIATTQIYTH 269


>gi|268608348|ref|ZP_06142075.1| hypothetical protein RflaF_02473 [Ruminococcus flavefaciens FD-1]
          Length = 399

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 54/323 (16%), Positives = 110/323 (34%), Gaps = 49/323 (15%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVES---- 125
            +    ++ +     +L  N+          ++    G     KIT++HI+  +      
Sbjct: 69  FQDFAEQWFEEYAKLNLR-NTSYERMKQLTVRVYPAIGHLRLDKITSRHIQQFINDLALN 127

Query: 126 -------RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
                  R  +  +A+  L+ +  +F +AV+ E +  NPC  V  PK + +    +T E+
Sbjct: 128 GKSLKNGRPLSRKTAVHHLSFISDVFSYAVKMEMLTDNPCKRVTVPKGEKKEKDIYTLEE 187

Query: 179 MQQFKSFWS-EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK---------- 225
           +            + R+ F   +YSG R  +      + +   +N+ S++          
Sbjct: 188 VAHLFQLLETAPLKYRVFFTLAIYSGFRRGEMLGLEWKDIDWEHNVISVRRTSNYTASKG 247

Query: 226 -----TQKTGTIITVELPDGFMKLLAMTPIGK--------------ETFFINNDKQKMNA 266
                T+   +  +++ P   M LL      +              +  F+  D + MN 
Sbjct: 248 IYTDTTKTKKSQRSLKFPQSVMDLLREYKAEQDEERVKLGTKWQDYDRLFVKWDGRPMNN 307

Query: 267 TQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGW-KTVDQAETYTK 324
                W K    +        H +R F A+   + G  A  +    G          Y  
Sbjct: 308 NTPYFWLKEFCEENNFRFCDIHSLRHFYASALINEGVDAATVSGALGHSTITTTTSIYCH 367

Query: 325 GADRIRLGIKNSRRISSVVDSDD 347
             ++ +   +    I+SV+D   
Sbjct: 368 VFNQAQ--ARAGDAIASVLDFKK 388


>gi|251779332|ref|ZP_04822252.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
 gi|243083647|gb|EES49537.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
          Length = 369

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 55/301 (18%), Positives = 111/301 (36%), Gaps = 34/301 (11%)

Query: 56  PKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKI 114
            +     SP       K  I+++       ++ +N+R+ ++S     II   G++   +I
Sbjct: 50  QRNRGYISPSASNMLFKDFITKWYTEYKQFNIGINTRVGYQSRIKTHIIPMLGNYKLNEI 109

Query: 115 TTKHIRS----GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170
           TT  I+      +  +K  P++  + +  +   FK+A + + +   P   +E+ K +   
Sbjct: 110 TTPIIQDFYNIMISEKKLKPATVKKSMDILISCFKYAKKNKLIYELPTE-IEKQKIEKPK 168

Query: 171 IRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI------ 224
           I+ W K+ +Q F +    G+         + +GLR S+ C      +  +   +      
Sbjct: 169 IKVWNKDHVQLFLNKIK-GTYLYTPIFIDVLTGLRLSELCGLRWCDVDLDNGYLTVNHQL 227

Query: 225 --------------KTQKTGTIITVE--LPDGFMKLLAMTPIGKETFFINNDKQ-KMNAT 267
                         KT+ +   I++   L +   +L       K  + + +    K    
Sbjct: 228 IYDAITRTLLLGGLKTESSHRKISIPTILINYLKELKEYRKAEKNDYLVLDRNDFKYTPK 287

Query: 268 QFSIWF--KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYT 323
             S+ F  K    K  + + + HG+R   ATI    G     +    G   +     TYT
Sbjct: 288 SLSMNFTKKIAKYKEQLPQITFHGLRHTHATILISNGENIKVVSERLGHTDIRMTLNTYT 347

Query: 324 K 324
            
Sbjct: 348 H 348


>gi|269792633|ref|YP_003317537.1| integrase family protein [Thermanaerovibrio acidaminovorans DSM
           6589]
 gi|269100268|gb|ACZ19255.1| integrase family protein [Thermanaerovibrio acidaminovorans DSM
           6589]
          Length = 297

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 35/255 (13%), Positives = 78/255 (30%), Gaps = 16/255 (6%)

Query: 85  GSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMR 141
            + + N+  ++     +      + G  D        +   + S +   ++      +  
Sbjct: 25  RAFSPNTCQAYRRDLSKYVSFCAERG-RDPVPPEVDTVSLFLASLRSQGAAKSSVQRAAA 83

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFE 197
            +  ++     V  +P      P + +      T+ ++ +             + R   E
Sbjct: 84  CIKSFSRFLGEVGEDPGKVPMLPDKPSPMPAILTEGEVLRLLEATAGDAPGDLRDRAMIE 143

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-----ELPDGFMKLLAMTPIGK 252
            L   GLR S+ C   ++ L  +  +++ +  G  + V     E      + L +    +
Sbjct: 144 LLYGCGLRASELCSLTMKDLDLSSGTVRVRGKGDKVRVLPLVGETRSALERYLKVRGTHQ 203

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGATAHELMA 309
              F  +              + +  +A +  S    H +R   AT     G     L  
Sbjct: 204 GPIFQGDRGGPFRREMLWKMIQRRGRQACIAASRLHPHILRHSCATHLLRRGMDLRTLQC 263

Query: 310 TYGWKTVDQAETYTK 324
             G  +V   E YT 
Sbjct: 264 LLGHSSVRTTEVYTH 278


>gi|323703842|ref|ZP_08115478.1| integrase family protein [Desulfotomaculum nigrificans DSM 574]
 gi|323531199|gb|EGB21102.1| integrase family protein [Desulfotomaculum nigrificans DSM 574]
          Length = 293

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 43/287 (14%), Positives = 93/287 (32%), Gaps = 23/287 (8%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--------DYRKITTKHIRSGV 123
             ++ E+ K   +  LA+++  +++       +   D         D   I  +  +  +
Sbjct: 6   GNVLGEFLKEIRYNGLALSTVNAYQKDIAYFAKWYMDTTDKEPHLGDVTSIDLREYQGYM 65

Query: 124 ESRKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           +S +   P++  + + ++    +WA  + YV   P    +  + +    +   + +  + 
Sbjct: 66  QSVQDLRPATINRRMAALEKYIRWAHEKGYVDRLPTF-PKIVREQKTPPKALGRVEQNRL 124

Query: 183 KSFWSEGSQPRLA--FEFLLYSGLRCSDSCRAGVQHLQNNI---FSIKTQKTGTIITVEL 237
                   + R       ++  GLR S+     +  L             K      V +
Sbjct: 125 LREAERRGKVRNIALIRLMMSCGLRVSEVVAIRLTDLDIGERHGMVAVRGKGNKYREVPV 184

Query: 238 PDGFMKLLAMTPIGKET-------FFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVR 290
           P    K +    I +          F N +   + A       K     AG++   H +R
Sbjct: 185 PPEARKAIREWMIERAKRYPDSDWLFPNRNGGHITARNAEQLVKNIGKFAGLDIHPHVLR 244

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
             +AT     GA    +    G   ++    YTK  DR  +     +
Sbjct: 245 HTAATNMIRTGADLVTVAQILGHANLNTTAIYTKP-DRKTMMEALEK 290


>gi|313887029|ref|ZP_07820729.1| site-specific recombinase, phage integrase family [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|312923555|gb|EFR34364.1| site-specific recombinase, phage integrase family [Porphyromonas
           asaccharolytica PR426713P-I]
          Length = 304

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 44/256 (17%), Positives = 92/256 (35%), Gaps = 19/256 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFD-YRKITTKHIRSGVESR----KHTPSSAIQFLTS 139
              A N+  S++ Y    ++    +    +I    I + +  +    K + S     + +
Sbjct: 42  QRYAGNTIRSYKDYASIFLKHVSKYPSLEEIPLSDIEAFINEKVQNGKISVSYQKGLVGA 101

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRK-TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEF 198
           ++ +++  + ++       L    PKR  ++  + ++KE+++      ++  + +     
Sbjct: 102 IKKMYELILDKKIQ-----LDYLYPKRSFSKLPKFFSKEEVRNILDN-TQNLKHKAILMT 155

Query: 199 LLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAM---TPIGKE 253
           +   GLR S+     ++ ++  + I  I   K      V LPD  +  L         KE
Sbjct: 156 IYSCGLRLSELLNLKIKDIKSSDGIIRIHQSKGNKDRIVSLPDKLLATLRHYYQAFKPKE 215

Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATY 311
             F      K +     +  K    KA V    S H +R   AT    +G     +    
Sbjct: 216 YLFEGEKGGKYSERSVQLILKKALIKANVQSEGSVHTLRHSYATHLIQSGIDIRIVKELL 275

Query: 312 GWKTVDQAETYTKGAD 327
           G + +     YT   D
Sbjct: 276 GHENIKTTMIYTHITD 291


>gi|303255271|ref|ZP_07341342.1| phage integrase family integrase/recombinase [Streptococcus
           pneumoniae BS455]
 gi|303260417|ref|ZP_07346386.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP-BS293]
 gi|303265063|ref|ZP_07350977.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae BS397]
 gi|302597740|gb|EFL64815.1| phage integrase family integrase/recombinase [Streptococcus
           pneumoniae BS455]
 gi|302638452|gb|EFL68918.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP-BS293]
 gi|302645423|gb|EFL75656.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae BS397]
          Length = 321

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 35/275 (12%), Positives = 90/275 (32%), Gaps = 14/275 (5%)

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
           ++  +++  +   L+  +  +      +  +   ++   + +          ++TT  +R
Sbjct: 33  VDGKKQQKYSNNNLLQLFITAKQVEGCSSKTIRYYQRTIENLFNAI-KESVTQLTTDDLR 91

Query: 121 SGVESRKH----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
           S + + +     + ++       +   F W  ++EY+  NP   +++ K +      +T 
Sbjct: 92  SYLANYQSEKDCSKANLDNIRRILSSFFAWLEQEEYIIKNPIRRIKKIKTEQNVKETYTD 151

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITV 235
           E ++  +    E  +     + L  +G+R  +  +     +   N   +   K      V
Sbjct: 152 EHLEIMRDNC-ENLRDLAIIDLLASTGMRVGELVQLNRSDIDFENRECVVFGKGKKERPV 210

Query: 236 ELPDG----FMKLLAMTPIGKETFFINNDKQ--KMNATQFSIWFKAKATKAGVNK-SAHG 288
                        L          F+    +  ++      I  +    K  + K   H 
Sbjct: 211 YFDARTKIHLRNYLNDRKDSHPALFVTLVGKVQRLGIAGVEIRLRKLGDKLSIQKVHPHK 270

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
            R+  AT + D G    ++    G   +D    Y 
Sbjct: 271 FRRTLATKAIDKGMPIEQVQKLLGHSKIDTTLAYA 305


>gi|194716540|gb|ACF93205.1| putative transposase [Sphingobacterium sp. PM2-P1-29]
          Length = 279

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 44/256 (17%), Positives = 92/256 (35%), Gaps = 19/256 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFD-YRKITTKHIRSGVESR----KHTPSSAIQFLTS 139
              A N+  S++ Y    ++    +    +I    I + +  +    K + S     + +
Sbjct: 17  QRYAGNTIRSYKDYASIFLKHVSKYPSLEEIPLSDIEAFINEKVQNGKISVSYQKGLVGA 76

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRK-TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEF 198
           ++ +++  + ++       L    PKR  ++  + ++KE+++      ++  + +     
Sbjct: 77  IKKMYELILDKKIQ-----LDYLYPKRSFSKLPKFFSKEEVRNILDN-TQNLKHKAILMT 130

Query: 199 LLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAM---TPIGKE 253
           +   GLR S+     ++ ++  + I  I   K      V LPD  +  L         KE
Sbjct: 131 IYSCGLRLSELLNLKIKDIKSSDGIIRIHQSKGNKDRIVSLPDKLLATLRHYYQAFKPKE 190

Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATY 311
             F      K +     +  K    KA V    S H +R   AT    +G     +    
Sbjct: 191 YLFEGEKGGKYSERSVQLILKKALIKANVQSEGSVHTLRHSYATHLIQSGIDIRIVKELL 250

Query: 312 GWKTVDQAETYTKGAD 327
           G + +     YT   D
Sbjct: 251 GHENIKTTMIYTHITD 266


>gi|303245973|ref|ZP_07332255.1| integrase family protein [Desulfovibrio fructosovorans JJ]
 gi|302492756|gb|EFL52624.1| integrase family protein [Desulfovibrio fructosovorans JJ]
          Length = 395

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 48/295 (16%), Positives = 97/295 (32%), Gaps = 20/295 (6%)

Query: 49  SALTGSTPKREYINSPRKKPT--TLKWLISEYRKSAHWGSLAVNSRISF-ESYFDQIIRK 105
            AL+    + E   +   +    T   L  EY  S      A+ +  S  E Y      +
Sbjct: 70  KALSNQARREEDKAAKEAEAGRWTFTRLWEEY-SSQKTPGAALTTDRSRFEKYLKPTFGE 128

Query: 106 SGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI-NPCLS-VER 163
               +   +    +RS +  +  +P +    L   + L ++ V++      +P    +  
Sbjct: 129 KDPVEVLTLDLDRLRSRLLKQGKSPQTVKHVLALFKRLVRFGVKKGLCDSPDPRKQTISM 188

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA--FEFLLYSGLRCSDSCRAGVQHLQ--N 219
           P+   E       +++ +      +    + A      +++G+R  +  +   + +    
Sbjct: 189 PRVDNETTEDLDADELARLVQAIEDEPNIQAANFMRLAMFTGMRRGELFKLEWRDVDFER 248

Query: 220 NIFSIKTQKTGTIITVELPDGFMKLLAMTP--IGKETFFINNDKQKM-NATQFSIWFKAK 276
               I+  K G    + L D    +L   P   G    F     ++       S   K  
Sbjct: 249 GFIHIRHPKGGKSQKIPLNDAARGVLEDHPHVDGTPYVFPGQGGKQRVTIQVASNRIK-- 306

Query: 277 ATKAGVNKSA---HGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGAD 327
            T+AG+       HG+R   A+  A +G      L      K+    + Y+   D
Sbjct: 307 -TRAGLPADFRPLHGLRHLFASTLASSGQVDMLTLQKLLTHKSPQMTKRYSHLRD 360


>gi|305681404|ref|ZP_07404211.1| site-specific tyrosine recombinase XerC [Corynebacterium
           matruchotii ATCC 14266]
 gi|305659609|gb|EFM49109.1| site-specific tyrosine recombinase XerC [Corynebacterium
           matruchotii ATCC 14266]
          Length = 331

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 44/292 (15%), Positives = 87/292 (29%), Gaps = 21/292 (7%)

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDF-DY 111
            +       S     T L+  I+++ +  H     +  +   + S      R +  F D+
Sbjct: 23  QSQATSAAASEPVASTQLQEAIADFAEHLHLVVGRSPATVAGYRSDLIDFCRHAHTFEDF 82

Query: 112 RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
             +  +           + ++  +   + R    W  RQ Y+  N    +  PK      
Sbjct: 83  TLVNLRAWLGAAVDAGKSRATIARRAAAARSFSSWCERQGYLDTNVAARLAVPKSGRSLP 142

Query: 172 RPWTKEDMQQF-----KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK- 225
              T    +        +   E  +     E L  +G+R S+ C   +  +  +  ++K 
Sbjct: 143 TVVTPTAAETLMVSSQATTEPEYLRDTAMLELLYATGIRVSELCGIDLADVNYSRNTVKV 202

Query: 226 TQKTGTIITVELPDGFMKLLAM------------TPIGKETFFINNDKQKMNATQFSIWF 273
           T K      V   D     L                      F+     +++        
Sbjct: 203 TGKGNKQRVVPFGDPAASALKAWRDHGRPHLLNPKKPAHNALFLGARGGRIDPRMVRTVV 262

Query: 274 KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
                + GV+    H +R  +AT   D GA    +    G  ++   + YT 
Sbjct: 263 ARAGEQLGVDGLGPHSLRHSAATHMLDGGADLRVVQELLGHSSLQTTQIYTH 314


>gi|121594170|ref|YP_986066.1| phage integrase family protein [Acidovorax sp. JS42]
 gi|120606250|gb|ABM41990.1| phage integrase family protein [Acidovorax sp. JS42]
          Length = 538

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 55/315 (17%), Positives = 103/315 (32%), Gaps = 42/315 (13%)

Query: 57  KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT 116
            +   +     P   K +   Y            ++ +++ + DQ I   GD     +  
Sbjct: 198 PQPQASQQPVAPANGKKISDAYDAWVAIRQAPERTQQTYKRHADQFIALMGDPPLHTVNR 257

Query: 117 -------KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS--VERPKRK 167
                    +++       T ++A   L S+R LF  A  + ++  NP     VE   ++
Sbjct: 258 TMGIAFRDKLQAWAIENGRTATTADNILVSLRALFNVARDRGWLTSNPLERLSVEIGGKE 317

Query: 168 TEGIRPWTKEDMQQFK-----SFWSEGSQPRLAFE-------FLLYSGLRCSDSCRAGVQ 215
           +EG  PWTK+++         +  +     +   E          Y+G R ++  +    
Sbjct: 318 SEGREPWTKDELGLIFSDPVWTQHAIPIDKKAGKEAAYWIPLIACYTGARLTEIAQLWTD 377

Query: 216 HLQN----NIFSIKT--------QKTGTIITVELPDGFMKL-----LAMTPIGKETFFIN 258
            +        F  +         + +G+   V +    ++L     +   P G     + 
Sbjct: 378 DVATEPGKETFEFRADAQRDQKLKNSGSWRAVPMHPELIRLGFCDYVQSLPKGSLFPHLP 437

Query: 259 NDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKT 315
            + +     QF  WF +  +  G     KS H  R   AT    AGAT  +  A  G   
Sbjct: 438 KEGKNGAGGQFGKWFGSFKSAKGFTSPAKSFHSFRHLVATELRLAGATDAQADAITGHAG 497

Query: 316 VDQ-AETYTKGADRI 329
                + Y     R 
Sbjct: 498 NGVGRQVYAATIRRK 512


>gi|300813238|ref|ZP_07093603.1| site-specific tyrosine recombinase XerC [Peptoniphilus sp. oral
           taxon 836 str. F0141]
 gi|300512645|gb|EFK39780.1| site-specific tyrosine recombinase XerC [Peptoniphilus sp. oral
           taxon 836 str. F0141]
          Length = 326

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 40/246 (16%), Positives = 93/246 (37%), Gaps = 22/246 (8%)

Query: 103 IRKSGDFDYRKITTKHIRSGVE----SRKHTPSSAIQFLTSMRVLFKWAV-RQEYVAINP 157
           I K  +   + I  + I + +      RK +  S  + ++++R  F +   + + + INP
Sbjct: 58  IDKVDEDLLKAINKQDIYAYISYLDKERKLSNKSKYRKISAVRAFFDYLTNKIDLLKINP 117

Query: 158 CLSVERPKRKTEGIRPWTKED-------MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210
             SV+ PK +         +        ++  K      ++        L  G+R S+  
Sbjct: 118 SESVDLPKIEKSLPIYLNLDQAINLLKTIENSKENDFYRTRDYCICTLFLNCGMRLSELS 177

Query: 211 RAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK-----LLAMTPIGKETFFINNDKQKMN 265
           +  +  +++ +  +   K      + L +  +      L+    +  +  FI+  K++M+
Sbjct: 178 QINISSIKDEMIRV-LGKGNKERQIYLNNACIYSIKNYLMHRPKVSTDALFISMRKKRMS 236

Query: 266 ATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAET 321
                   +     +G++    + H +R  +AT+    G A    L    G +++   + 
Sbjct: 237 NRSIQHMIEKHIRNSGLDPNKYTVHKLRHTAATLMYQYGNADIKSLQEILGHESITTTQI 296

Query: 322 YTKGAD 327
           YT   D
Sbjct: 297 YTHVND 302


>gi|283479890|emb|CAY75806.1| Tyrosine recombinase xerD [Erwinia pyrifoliae DSM 12163]
          Length = 351

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 43/289 (14%), Positives = 102/289 (35%), Gaps = 32/289 (11%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFE---SYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
           TL+ L   +         +  +   +      F       G     +++   + +     
Sbjct: 20  TLRQLAESWLAHLVVAGRSPRTVQGYRERVRAFLAWCEPRGITYAPQVSLAVLEAYQRWL 79

Query: 127 KHTPSSAIQ---------FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI-RPWTK 176
           +    +  +          LT++R+LF+W +++  +  NP   +  PK +     + +++
Sbjct: 80  QGYRRADGKQLVVNSQLGVLTAIRMLFRWLLQRHVILYNPAELLALPKEERRLPAQVFSE 139

Query: 177 ED----MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTG 230
            +    +Q   +    G + R   E L  +G+R ++     +  +     + +++  K G
Sbjct: 140 AETRRVLQSLDAGTPPGLRNRAILELLWSTGIRRTELANLLLSDVDAVRGVVNVRRGKGG 199

Query: 231 TIITVELPDGFMKLLA----------MTPIGKETFFINNDKQKMNATQFSIWF-KAKATK 279
               V + +  +  LA                   FI++    +     +    +A  + 
Sbjct: 200 RDRVVPVGNAALMWLARYLKDVRPRLAQRFDSGHLFISHKGTGLAHGTLTAMAGRAIRSG 259

Query: 280 AGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           A + K+   H  R   AT   + GA    + A  G + ++  + YT+ A
Sbjct: 260 AHLKKAGACHIFRHXMATQMLENGADTRHIQAILGHEKLETTQIYTRVA 308


>gi|282881982|ref|ZP_06290623.1| tyrosine recombinase XerC [Peptoniphilus lacrimalis 315-B]
 gi|281298012|gb|EFA90467.1| tyrosine recombinase XerC [Peptoniphilus lacrimalis 315-B]
          Length = 326

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 40/246 (16%), Positives = 93/246 (37%), Gaps = 22/246 (8%)

Query: 103 IRKSGDFDYRKITTKHIRSGVE----SRKHTPSSAIQFLTSMRVLFKWAV-RQEYVAINP 157
           I K  +   + I  + I + +      RK +  S  + ++++R  F +   + + + INP
Sbjct: 58  IDKVDEDLLKAINKQDIYAYISYLDKERKLSNKSKYRKISAVRAFFDYLTNKIDLLKINP 117

Query: 158 CLSVERPKRKTEGIRPWTKED-------MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210
             SV+ PK +         +        ++  K      ++        L  G+R S+  
Sbjct: 118 SESVDLPKIEKSLPIYLNLDQAINLLKTIENSKENDFYRTRDYCICTLFLNCGMRLSELS 177

Query: 211 RAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK-----LLAMTPIGKETFFINNDKQKMN 265
           +  +  +++ +  +   K      + L +  +      L+    +  +  FI+  K++M+
Sbjct: 178 QINISSIKDEMIRV-LGKGNKERQIYLNNACIYSIKNYLMHRPKVSTDALFISMRKKRMS 236

Query: 266 ATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAET 321
                   +     +G++    + H +R  +AT+    G A    L    G +++   + 
Sbjct: 237 NRSIQHMIEKHIRNSGLDPNKYTVHKLRHTAATLMYQYGNADIKSLQEILGHESITTTQI 296

Query: 322 YTKGAD 327
           YT   D
Sbjct: 297 YTHVND 302


>gi|124485609|ref|YP_001030225.1| formylmethanofuran dehydrogenase subunit E-like protein
           [Methanocorpusculum labreanum Z]
 gi|124363150|gb|ABN06958.1| phage integrase family protein [Methanocorpusculum labreanum Z]
          Length = 320

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 45/296 (15%), Positives = 90/296 (30%), Gaps = 36/296 (12%)

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-------QIIRKSGDFDY--------- 111
             T    I  Y  +    + A N+  ++             +    G             
Sbjct: 21  KRTFSIWIPRYLSNLQTKNYAENTIEAYGRILKLFATYETYLKENDGSVPTSSEELNNFG 80

Query: 112 --RKITTKHIRSG------VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163
              +I T     G         R+ +P+S  Q+ +++   + + + Q+    NP   V+R
Sbjct: 81  MGAEIDTNSYEIGDFFTLLRNERQLSPASLRQYDSALSSFYGYLINQDITEANPMTKVDR 140

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223
           PK K   ++     ++  F +         L       +G+R S+ C    +H+     +
Sbjct: 141 PKIKDRELKYLKHNEVVAFINSIENPRNALLIRTI-YATGMRISEICGLLAEHIDFEEET 199

Query: 224 IKTQKTGTIITVEL-----PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKAT 278
           I+ +  G  I +        +   + L     G    F   +   ++       F   A 
Sbjct: 200 IRVRGKGGKIRIVFCDSDTLNKIREHLNGKKSG--PVFEGRNGNAISPRTVQHIFNIYAP 257

Query: 279 KAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGI 333
             G+  + H +R   A+           +    G  ++   E Y     D  R   
Sbjct: 258 P-GI--TPHKIRHSYASELYKRSHNLRVVQENLGHNSIQTTEIYIHTDIDERRKAY 310


>gi|299068373|emb|CBJ39597.1| site-specific tyrosine recombinase [Ralstonia solanacearum CMR15]
          Length = 329

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 47/289 (16%), Positives = 90/289 (31%), Gaps = 40/289 (13%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQI----IRKSGDFDYRKITTKHIRSGVESR--- 126
           I+ Y  +  +   L+ ++  S+      +     R +   D  ++   HIR  +      
Sbjct: 20  IAAYLDALKFERKLSEHTLASYARELAVLQQLGARFAAGIDPMQLQPHHIRRMMAQLHGG 79

Query: 127 KHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
             +  S  + L++ R  +KW A+R   V  NP   +  PK      +  + E        
Sbjct: 80  GLSGRSIARALSAWRGWYKWLALRDAAVTANPVDGIHAPKSPKRLPKALSVEQAVALMEH 139

Query: 186 WS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN------IFSIKTQ------KT 229
                 E  + R   E     GLR S+     ++H +           ++ +      K 
Sbjct: 140 LPGDDPEAVRDRAVNELFYSCGLRLSELVGLDLRHAKAGDYASASWLDLEAREVTVLGKG 199

Query: 230 GTIITVELPDGFMKL-------------LAMTPIGKETFFINNDKQKMNATQFSIWFKAK 276
               T+ +     +                  P      F++   +++   Q     K  
Sbjct: 200 NKRRTLPVGSKAAEALAAWLAVRAQLAPPDAAPEDAHALFLSARGKRLTQRQIQTRMKRN 259

Query: 277 ATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           A  AGV      H +R   AT    +      +    G  ++   + YT
Sbjct: 260 AIAAGVPADVHPHVLRHSFATHMLQSSGDLRAVQELLGHASIASTQVYT 308


>gi|294625249|ref|ZP_06703889.1| site-specific recombinase, phage integrase family [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 11122]
 gi|292600477|gb|EFF44574.1| site-specific recombinase, phage integrase family [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 11122]
          Length = 360

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 57/315 (18%), Positives = 109/315 (34%), Gaps = 32/315 (10%)

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119
           YI     + TT++  +  Y            ++IS     + +I+  G +    +T + +
Sbjct: 50  YIRRAGSERTTVEAAMRRYLAEVT-SGKRPVTQISEVRRAEVLIKYLGRYSLAAVTAEIV 108

Query: 120 RSGVESR---------KHTPSSAIQF---LTSMRVLFKWAVRQ---EYVAINPCLSVERP 164
               + R         +  P S       L  +  +F  A+++     +   P L + RP
Sbjct: 109 ARFRDERLAGDLDAQGQRRPRSNNTVRLELALLGHMFTVALKEWGLGLIHS-PVLGIRRP 167

Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQ--NN 220
                  R  T  + Q+        S P L       L +G+R S+        +     
Sbjct: 168 PPGPGRDRRLTPHEEQRLLRAVDGHSNPMLGWIVRLALETGMRASELVGLRRSQVDLVRR 227

Query: 221 IFSIKTQKTGTIITVELPDGFMKLLAMT------PIGKETFF---INNDKQKMNATQFSI 271
           +  ++  K G+  TV L    +++L +       PI  +  F      D ++ +      
Sbjct: 228 VARLQQTKNGSSRTVPLTQEAVQVLRVALANPVRPIDTDLLFYGEPGRDGKRRSYQFNPA 287

Query: 272 WFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           W K K      +   H +R  + +   +AG +  E+ A  G K++     YT    R   
Sbjct: 288 WMKLKCDAGMADLHFHDLRHEAISRLVEAGLSDQEVAAISGHKSMQMLRRYTHL--RAED 345

Query: 332 GIKNSRRISSVVDSD 346
            +    R+   V S+
Sbjct: 346 LVSKLDRLGRGVASN 360


>gi|9625463|ref|NP_039697.1| observed 41.8Kd protein [Mycobacterium phage L5]
 gi|465416|sp|P22884|VINT_BPML5 RecName: Full=Integrase
 gi|579129|emb|CAA79409.1| gene 33 [Mycobacterium phage L5]
          Length = 371

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 53/319 (16%), Positives = 114/319 (35%), Gaps = 41/319 (12%)

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYR 112
              K+   ++   +  T KWL+           LA  +R  +  + ++ I    G+    
Sbjct: 63  DRAKKAAASAITLEEYTRKWLVER--------DLADGTRDLYSGHAERRIYPVLGEVAVT 114

Query: 113 KITTKHIRSGVESRKHT-PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
           ++T   +R+         P++       +R +   AV  + +A NPC  +E+       +
Sbjct: 115 EMTPALVRAWWAGMGRKHPTARRHAYNVLRAVMNTAVEDKLIAENPCR-IEQKAADERDV 173

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS--IKTQKT 229
              T E++    +        R+A   L ++ LR  +      + + ++  +  ++ ++ 
Sbjct: 174 EALTPEELDIVAA--EIFEHYRIAAYILAWTSLRFGELIELRRKDIVDDGMTMKLRVRRG 231

Query: 230 GTII----------------TVELPDGFMKLLAMTPIGK-------ETFFINN-DKQKMN 265
            + +                 V +P    +++      +       E F +      +++
Sbjct: 232 ASRVGNKIVVGNAKTVRSKRPVTVPPHVAEMIRAHMKDRTKMNKGPEAFLVTTTQGNRLS 291

Query: 266 ATQFSIWFKA-KATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            + F+   K   A         H +R   AT +A AGAT  ELMA  G  T   A  Y  
Sbjct: 292 KSAFTKSLKRGYAKIGRPELRIHDLRAVGATFAAQAGATTKELMARLGHTTPRMAMKYQM 351

Query: 325 GAD-RIRLGIKNSRRISSV 342
            ++ R     +   +++  
Sbjct: 352 ASEARDEAIAEAMSKLAKT 370


>gi|94986617|ref|YP_594550.1| prophage DLP12 integrase [Lawsonia intracellularis PHE/MN1-00]
 gi|94730866|emb|CAJ54229.1| prophage DLP12 integrase [Lawsonia intracellularis PHE/MN1-00]
          Length = 388

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 63/370 (17%), Positives = 112/370 (30%), Gaps = 39/370 (10%)

Query: 4   SLRLPPFVTKERTRHG-----KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKR 58
             + P    +E  R G     K+ Y   K +G+ I         FI     A       R
Sbjct: 16  KTKYPGVFFREEKRIGASGSEKVYYVVFKKNGKVI--EEKVGRQFIDDMTPAKASRI--R 71

Query: 59  EYINSPRKKPTTLK---WLISEYRK--SAHWGSLAVNSRISFESYFD------QIIRKSG 107
             +   ++K   L     L +  RK     W   A     +  +  D       +    G
Sbjct: 72  SELIEGKRKTKKLAKEEALAASLRKNIHGIWEEYAKGRPKNKNTDIDLCRYELHLKNIFG 131

Query: 108 DFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVA-INPCLSV-E 162
                +ITT  +R   ++      +P + +  L  +R + ++  +  +    +    V E
Sbjct: 132 HKFPEEITTNDVRIFKDNLIQSGKSPQTVLNTLALLRRILRFGEKNGFCTLPDRSQLVFE 191

Query: 163 RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA--FEFLLYSGLRCSDSCRAGVQHLQNN 220
            PK         T+  ++         +   +A      L +G+R           L   
Sbjct: 192 MPKVDNIKTENLTETQLKALMEALDAETDQVMASCLRLALVTGMRKGALLALEWTDLDFE 251

Query: 221 IFSIKTQ----KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA-TQFSIWFKA 275
              I  Q    K G    + + +    +L   P      F N   +K +         K 
Sbjct: 252 QGIITLQGKSAKKGKTAYIPMSEAAKIILEKLPHTSRYVFPNTKGEKRSDFRSMPNRIKQ 311

Query: 276 KATKAGVNKSAHGVRKFSATISADAGA-TAHELMATYGWKTVDQAETYTKGADRIRLGIK 334
           KA      +  HG+R   A+  A +G    + L       +    + Y        L  +
Sbjct: 312 KAQLPADFRPFHGLRHTYASHLASSGKVDLYTLQKLLTHSSPQMTQRYAH------LADE 365

Query: 335 NSRRISSVVD 344
             +R + V D
Sbjct: 366 AMKRAARVAD 375


>gi|303246068|ref|ZP_07332349.1| integrase family protein [Desulfovibrio fructosovorans JJ]
 gi|302492464|gb|EFL52335.1| integrase family protein [Desulfovibrio fructosovorans JJ]
          Length = 373

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 55/311 (17%), Positives = 102/311 (32%), Gaps = 32/311 (10%)

Query: 35  LPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRIS 94
           +P P  +T     +  ++ +      +   +    TL  L   Y               +
Sbjct: 52  IPDPETATASVQVVKTVSTTDAPTGEVLGQKPVGITLLELGHRYLDHMRASGRTDKHIRN 111

Query: 95  FESYFD-QIIRKSGDFDYRKITTK--------HIRSGVESRKHTPS--SAIQFLTSMRVL 143
            E   + Q +   GD     +T +        H +    + K T S  +  ++   +  +
Sbjct: 112 IERLLENQFVPVIGDKPVDSLTYQGDMVQFILHFKGVSGTTKKTRSQYTVNKYCDYLSFI 171

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPW----TKEDMQQFKSFWSEGSQPRLAFEFL 199
           F + +      +NP  + ++PK +     PW    T +D ++  +        R A E  
Sbjct: 172 FNFGIDNGLTKVNPLKNWKKPKVQ-----PWDLKLTLDDAKKIMACAEP--HLRWAMEVC 224

Query: 200 LYSGLRCSD--SCRAGVQHLQ--NNIFSIKTQKTGTIITVEL-PDGFMKLLAMTPIGKET 254
              G R  +        +++        I   KT T  TV + P    +L       +  
Sbjct: 225 FNLGTRPGESELLSLRWENIDFTAGTVRIYATKTKTYRTVPINPSFLKRLEEEKASSQSE 284

Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYG 312
           + I    +K+        FK    +AG+      + +R   AT     GA    +    G
Sbjct: 285 YVIEYMGRKLT--TIRKAFKHACQRAGITYPTRMYDLRHLFATTLLSRGADLAAVSKMMG 342

Query: 313 WKTVD-QAETY 322
             TV   A+TY
Sbjct: 343 HSTVKLTADTY 353


>gi|110802806|ref|YP_698501.1| site-specific tyrosine recombinase XerC [Clostridium perfringens
           SM101]
 gi|110683307|gb|ABG86677.1| site-specific recombinase, phage integrase family [Clostridium
           perfringens SM101]
          Length = 450

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 45/257 (17%), Positives = 91/257 (35%), Gaps = 25/257 (9%)

Query: 103 IRKSGDFDYRKITTKHIRSGVE----SRKHTPSSAIQFLTSMRVLFKWA-VRQEYVAINP 157
           I   GD   + IT   I + +      R ++  +  + + +++  FK+   + + +  NP
Sbjct: 188 ISDLGDNFIKDITLSDIYAFLAFLEKVRNNSAYARARKVATLKSFFKFLNSKIKLIDENP 247

Query: 158 CLSVERPKRKTEGIRPWTKED----MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG 213
            + +E PK         T +     +           +        L  G+R S+ C   
Sbjct: 248 TVELESPKINKRHPVYLTLDQSITVLNSMNKSNKNYYRDYCILTLFLNCGMRLSELCNIE 307

Query: 214 VQHLQNNIFSIKTQKTGTIITVELPDGFMKLL----------AMTPIGKETFFINNDKQK 263
           ++ ++ +  +I   K     TV L +  +  +            T   K+  F+++  + 
Sbjct: 308 IEKIKGDTLTII-GKGNKERTVYLNEASIAAIENYLKNRNDSKATEEAKKYLFLSSKYRP 366

Query: 264 MNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQA 319
           +N     I  K     AG      + H +R  +AT+    G      L    G + +   
Sbjct: 367 INKRSVEILVKKHIENAGFKDQKYTPHKLRHTAATLMYKYGNVDIRSLQNILGHENISTT 426

Query: 320 ETYTKGADR-IRLGIKN 335
           + YT   D  +R  +K 
Sbjct: 427 QIYTHVDDETLRKAVKT 443


>gi|325297661|ref|YP_004257578.1| integrase family protein [Bacteroides salanitronis DSM 18170]
 gi|324317214|gb|ADY35105.1| integrase family protein [Bacteroides salanitronis DSM 18170]
          Length = 432

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 45/267 (16%), Positives = 91/267 (34%), Gaps = 28/267 (10%)

Query: 99  FDQIIRKSGDF-DYRKITTKHIRSGVE--SRKHTPS-------SAIQFLTSMRVLFKWAV 148
              I   +G      +I     +  ++    ++ P        +   +   +      AV
Sbjct: 173 IRIIEDYAGKKVTLDQIDKAFCQGYIDYLMMEYRPRGKRVSNFTLKNYYRVLNSALNAAV 232

Query: 149 RQEYVAINPCLSVER---PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLR 205
           R E +  NP   +++    +         T E+++   +   +  + + A+ F  + GLR
Sbjct: 233 RAELMRSNPFDKIDKSDKIRLPESKRSYMTIEEVKALIATPMKYEEIKCAYLFSCFCGLR 292

Query: 206 CSDSCRAGVQHLQNNIFSIKT----QKTGTIITVELPDGFMKLL--AMTPIGKETFFINN 259
            SD  R   + +  +    +     +KT   I + L    +K +         +  F   
Sbjct: 293 ISDVKRLQWKDVFIDKGQYRLAVSMKKTKEPIYLPLSSEALKWMPERGDKTPDDLVFDLP 352

Query: 260 DKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVD 317
              ++N        K  A  AG+NK  S H  R   AT+    GA  +      G   V 
Sbjct: 353 SGNEINR-----LLKPWAKAAGINKRFSFHTSRHTFATMMLTLGADLYTTSKLLGHADVK 407

Query: 318 QAETYTKGADRIRLGIKNSRRISSVVD 344
             + Y K  ++ +   +    ++ + D
Sbjct: 408 MTQVYAKIINKKK--DEAVNLVNGLFD 432


>gi|310764975|gb|ADP09925.1| site-specific tyrosine recombinase XerC [Erwinia sp. Ejp617]
          Length = 359

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 44/289 (15%), Positives = 98/289 (33%), Gaps = 32/289 (11%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFE---SYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
           TL+ L   +         +  +   +      F       G     +++   + S     
Sbjct: 20  TLRQLAESWLSHLAAAGRSPRTVQGYGERVRAFLAWCEPRGIRYAPQVSLVVLESYQRWL 79

Query: 127 KHTPSSA---------IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI-RPWTK 176
           +    +             L+++R L +W +++ ++  NP   +E PK +     + +++
Sbjct: 80  QSYRRADGRHLVVNGQRHLLSALRGLLRWLLKRHHILYNPADLLELPKEERRLPAQVFSE 139

Query: 177 ED----MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTG 230
            +    +Q   +    G + R   E L  SG+R S+     +  +     + +++  K G
Sbjct: 140 SETRRVLQSLDAGTPPGLRNRAILELLWSSGIRRSELAGLLLSDVDFTRGVVNVRRGKGG 199

Query: 231 TIITVEL----PDGFMKLLA------MTPIGKETFFINNDKQKMNATQFSIWF-KAKATK 279
               V +         + L                FI++    +     +    +A    
Sbjct: 200 KDRVVPVGYAALMWLGRYLQDVRPRLAQRFDSGHLFISHKGTGLAHGTLTAMAGRAIRDG 259

Query: 280 AGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           A + K+   H  R   AT   + GA    + A  G + ++  + YT+ A
Sbjct: 260 AHLKKAGACHIFRHSMATQMLENGADTRHIQAILGHEKLETTQIYTRVA 308


>gi|325980818|ref|YP_004293221.1| integrase family protein [Nitrosomonas sp. AL212]
 gi|325533323|gb|ADZ28042.1| integrase family protein [Nitrosomonas sp. AL212]
          Length = 316

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 50/268 (18%), Positives = 92/268 (34%), Gaps = 30/268 (11%)

Query: 91  SRISFESYFDQIIRKSG---DFDYRKITTKHIRSGVES---RKHTPSSAIQFLTSMRVLF 144
           +R ++E+     +  +G     ++R +T  HI +  +    R  +  S    L ++  LF
Sbjct: 38  TRRAYENALKDFMNFTGIQNPEEFRVVTRAHIIAWRDDLMNRSLSSMSIRHRLAALSSLF 97

Query: 145 KWAVRQEYVAINPCLSVERPKRKT-EGIRPWTKEDMQQFKSFWSEGS-----QPRLAFEF 198
           ++   +  V  NP   V+RP  ++ EG  P   +   +      +GS     + R     
Sbjct: 98  EYLCEKNTVTHNPVKGVKRPAVESYEGKTPAIGDHQARKLLDAPDGSSLKGKRDRAILAT 157

Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIITVELPDGFMKLLAMTPIGKET 254
           LLY  LR  + CR  V+  +     +     + K G    V L      L+       E 
Sbjct: 158 LLYHALRRDELCRLKVKDFKQERRGVPHMKISGKGGKTRYVPLHPAASGLIHDYLDAAEH 217

Query: 255 FFINND--------------KQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADA 300
              +                ++ +         +  + K G    AH +R  +AT + D 
Sbjct: 218 GLEDTGALFRSTSNNRDKESQKPITPDGVYKLVQKYSEKLGFKIGAHSLRATAATNALDH 277

Query: 301 GATAHELMATYGWKTVDQAETYTKGADR 328
            A   ++    G   +     Y     R
Sbjct: 278 QADIAKVQEWLGHANIATTRIYDHRRTR 305


>gi|118592686|ref|ZP_01550076.1| Integrase [Stappia aggregata IAM 12614]
 gi|118593369|ref|ZP_01550753.1| Integrase [Stappia aggregata IAM 12614]
 gi|118593930|ref|ZP_01551286.1| Integrase [Stappia aggregata IAM 12614]
 gi|118433470|gb|EAV40141.1| Integrase [Stappia aggregata IAM 12614]
 gi|118434047|gb|EAV40704.1| Integrase [Stappia aggregata IAM 12614]
 gi|118434737|gb|EAV41388.1| Integrase [Stappia aggregata IAM 12614]
          Length = 287

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 40/267 (14%), Positives = 90/267 (33%), Gaps = 16/267 (5%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRK--ITTKHIRSGVESRKHTPSSAIQFLTSMRV 142
            +L+  ++ S+     +  R  G    R      +  +  + +   +  +  Q + ++R 
Sbjct: 19  RNLSPATQRSYLHAVSKFSRYFGRSPDRLGLEDVRAFQVHLVATGISWPALNQTVCALRF 78

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202
            +   + Q  +       +   +   +     + +++ +F        + R A      +
Sbjct: 79  FYGVTLGQAEIP----ERIAYARAPRKLPEVLSADEVVRFLEAVPS-LKTRTALTAAYAA 133

Query: 203 GLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLA---MTPIGKETFFI 257
           GLR S+     V  +     +  I+  K G    V L    + +L          +  F 
Sbjct: 134 GLRVSEVVGLKVADIDSQRGVIRIRHGKGGKDRYVMLSAQLLHILRTYWRLARPPDWLFP 193

Query: 258 NNDK-QKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWK 314
             +    ++ T      ++    AG++K  + H +R   AT   + G     +    G  
Sbjct: 194 RRNGSGPISITVLHAACRSARAAAGIDKRVTVHTLRHSFATHLLENGTDIRIIQVLLGHN 253

Query: 315 TVDQAETYTKGADR-IRLGIKNSRRIS 340
            +     YTK + R IR       R++
Sbjct: 254 NLSSTARYTKVSSRLIRRTQSPLDRLN 280


>gi|24375788|ref|NP_719831.1| integrase/recombinase XerC [Shewanella oneidensis MR-1]
 gi|34222793|sp|Q7ZAJ5|XERC_SHEON RecName: Full=Tyrosine recombinase xerC
 gi|24350736|gb|AAN57275.1|AE015863_4 integrase/recombinase XerC [Shewanella oneidensis MR-1]
          Length = 299

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 31/265 (11%), Positives = 88/265 (33%), Gaps = 19/265 (7%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-FDYRKITTKHIR---SGVESRKHTPS 131
             Y +S     L+ ++  ++     +      +  D   +  +H +   + +  +  +P 
Sbjct: 13  EAYMQSER--QLSAHTVRNYLYELQRGRELLPEGIDLLNVGREHWQQVLAKLHRKGLSPR 70

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR---PWTKEDMQQFKSFWSE 188
           S   +L++++   ++ +R   + +NP   +  PK+     +     +   + +       
Sbjct: 71  SLSLWLSAVKQWGEFLLRAGAIELNPAKGLSAPKQAKPLPKNIDVDSLTHLLEIDGNDPL 130

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM 247
             + +   E    SGLR ++     +  +Q +   ++   K      V +    +  ++ 
Sbjct: 131 TLRDKAIMELFYSSGLRLAELAALDLSSVQYDQREVRVLGKGNKERIVPVGRYAIDAISA 190

Query: 248 T-------PIGKETFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSAHGVRKFSATISA 298
                   P      F+    ++++                  +    H +R   AT   
Sbjct: 191 WLECRRQIPCEDNALFVTEKGKRLSHRSIQARMSKWGQEQALSMRVHPHKLRHSFATHML 250

Query: 299 DAGATAHELMATYGWKTVDQAETYT 323
           ++ A    +    G + +   + YT
Sbjct: 251 ESSADLRAVQELLGHENLSTTQIYT 275


>gi|291527468|emb|CBK93054.1| Site-specific recombinase XerD [Eubacterium rectale M104/1]
          Length = 308

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 43/284 (15%), Positives = 100/284 (35%), Gaps = 30/284 (10%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV--ESRKHTPSSAIQFLTSMRV 142
             L   +  +++    Q   +    +   ITT  + S +    ++++P S  + + S++ 
Sbjct: 19  KRLDTKTLKAYKIDLRQFSEQISITEIEYITTSVLESYITNLHQQYSPKSVKRKIASIKA 78

Query: 143 LFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQ-----QFKSFWSEGS------ 190
            F +   ++ + +NP   ++ + +      +    + ++      +  +    S      
Sbjct: 79  FFHYLEYKDIIILNPFNKLQIKFREPVILPKTIPLKTLEVLFNAAYAKYHKTTSPCQKRK 138

Query: 191 --QPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTII-------TVELPD 239
             +     E L  +G+R S+ C   +Q   LQNNI  I  + +   +        + + +
Sbjct: 139 TLRDIAVLELLFATGIRISELCSILLQNMDLQNNIILIHGKGSKERLIHICDPNVLNILN 198

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS 297
            +             FF+NN   +++              A ++   + H  R   AT  
Sbjct: 199 QYYTEYYSQISACGYFFVNNTGNRLSDQSVRDMINKYCRIADIDYHITPHMFRHTFATQL 258

Query: 298 ADAGATAHELMATYGWKTVDQAETYTK---GADRIRLGIKNSRR 338
            +       +    G  +++  E YT       +  L  K+ RR
Sbjct: 259 LEENVDIRYIQTMLGHSSINVTEIYTHVTISKQKDILASKHPRR 302


>gi|213972099|ref|ZP_03400191.1| site-specific recombinase, phage integrase family [Pseudomonas
           syringae pv. tomato T1]
 gi|302061577|ref|ZP_07253118.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. tomato K40]
 gi|302131091|ref|ZP_07257081.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. tomato NCPPB 1108]
 gi|213923137|gb|EEB56740.1| site-specific recombinase, phage integrase family [Pseudomonas
           syringae pv. tomato T1]
          Length = 318

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 42/270 (15%), Positives = 90/270 (33%), Gaps = 30/270 (11%)

Query: 89  VNSRISFESYFDQIIR---KSGDFDYRKITTKHI---RSGVESRKHTPSSAIQFLTSMRV 142
             +R ++++           +G  ++R +   H+   R+ +E R  + ++  + L ++  
Sbjct: 38  PRTRRAYQADLRDFCSFVGLAGAEEFRVVNRAHVLAWRAQLERRALSGATIRRKLAALAS 97

Query: 143 LFKWAVRQE-YVAINPCLSVERPKRKTEGIRP--WTKEDMQQFKSFWSE----GSQPRLA 195
           LF + +        NP   V RP  +T   +      +  ++      +    G + R  
Sbjct: 98  LFDYLLDNNALAGGNPVHGVARPPVETNEGKTPALGDDQAKRLLDAPDDESLQGLRDRAI 157

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ---KTGTIITVELPDGFMKLLAMTPIGK 252
              LLY GLR  +        LQ        +   K G I  + L     + + +  +  
Sbjct: 158 LAVLLYQGLRREELSLLQTGDLQERRGVKHLRIHGKGGKIRYLPLHPVAAERIYVCLVRD 217

Query: 253 E-------TFFINNDKQ----KMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISA 298
                     F +   +     +            A+ A ++      HG+R  +AT + 
Sbjct: 218 GDRAQTPGALFCSLRGKTSGTGITGKGVYGVVSKWASAALIHVDGLGVHGLRATAATNAL 277

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADR 328
           +  A   ++    G   +     Y +   R
Sbjct: 278 EHDADIAKVQMWLGHANISTTRLYDRRGQR 307


>gi|227112895|ref|ZP_03826551.1| integrase protein [Pectobacterium carotovorum subsp. brasiliensis
           PBR1692]
          Length = 301

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 53/275 (19%), Positives = 96/275 (34%), Gaps = 19/275 (6%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKHT 129
           +K L  ++ +         +++  ++S  D+ II   G    + +    + S ++   H 
Sbjct: 1   VKELCIKFMEDYSSQRNKPSTQEGYQSVIDRNIIPMLGRMKVQDLKRPDVASMMKKMAHK 60

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPWTKEDM-------Q 180
           P+ A +  + MR +F  A    Y     NPC  V       +     + E+M        
Sbjct: 61  PADANRTFSVMRKMFNLAEVWGYRPDGTNPCRHVPM-YPNGKATHLISDEEMGKLFRYLD 119

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELP 238
           Q ++   E +   LA         R S+        +   N        KTG +    + 
Sbjct: 120 QLEAEGLEHAVIPLAIRLQFEFAARRSEIIELQWDWIDLENRRVVWPDSKTGGMSK-PMS 178

Query: 239 DGFMKLLAMTPIG--KETFFINNDK--QKMNATQFSIWFKAKATKAGVNK-SAHGVRKFS 293
           +   +LL+       K     +     + ++  ++   +      AGV     HG+R  S
Sbjct: 179 EEAYRLLSTAARNAMKPHVLPSPRHPDRHLSDGEYYSGWTRTLKAAGVTHVGTHGIRHRS 238

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           AT  A++G      MA    KTV     Y    D+
Sbjct: 239 ATDIANSGIPVKVGMALTAHKTVAMFMRYVHTEDK 273


>gi|225874532|ref|YP_002755991.1| putative tyrosine recombinase XerD [Acidobacterium capsulatum ATCC
           51196]
 gi|225794156|gb|ACO34246.1| putative tyrosine recombinase XerD [Acidobacterium capsulatum ATCC
           51196]
          Length = 302

 Score =  106 bits (264), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 42/283 (14%), Positives = 88/283 (31%), Gaps = 35/283 (12%)

Query: 73  WLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK--HIRSGVESRKHT 129
            L+ +Y+        L   S  +++S            +   +  +  H+   +E     
Sbjct: 8   DLLRDYQSYLRVEKGLRPLSCQAYQSDLLLFAEYLESMNTALLDARSEHVAGFLEHLNTH 67

Query: 130 P---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM------Q 180
                S  + L+ +R  +KW +  + +  +P ++++ P       +   +EDM       
Sbjct: 68  GVVSRSVARKLSCLRGFYKWLILDKRIHRDPTINMDSPSAWKILPKSLAQEDMTAMLDRA 127

Query: 181 QFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV- 235
           +  +   E      +     E L   GLR S+     V  L  +   +  +  G    + 
Sbjct: 128 RLLAEHPEADGIALRNYAILELLYAGGLRVSELTGLRVADLSLDAGRVLVRGKGDKERLV 187

Query: 236 ------------ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
                        L  G  +L       +   F++   + +         +         
Sbjct: 188 PLGQPAVAALRQYLDRGRAELARKARGAQGALFLSARGKPLTREYVWKLVRQY------G 241

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            S H +R  +AT   + GA    +    G   +   + YT  A
Sbjct: 242 ASPHMLRHSAATHMVEHGADLRTVQTFLGHADIATTQVYTHVA 284


>gi|310827797|ref|YP_003960154.1| phage integrase [Eubacterium limosum KIST612]
 gi|308739531|gb|ADO37191.1| phage integrase [Eubacterium limosum KIST612]
          Length = 320

 Score =  106 bits (264), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 50/288 (17%), Positives = 91/288 (31%), Gaps = 40/288 (13%)

Query: 85  GSLAVNSRISFESYFDQIIR------------------KSGDFDYRKITT---KHIRSGV 123
              + N+ IS+ +   Q  R                     D D + I       I + +
Sbjct: 20  RGFSPNTLISYRNDLMQFFRFLKVRFQLADPDAEFDTISIDDVDLKVIKQVTLPDIYAFL 79

Query: 124 ESRKHTPSSAIQFLT----SMRVLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKED 178
                  S+          +++ L+ +     +    +P   +E PK K+      T ++
Sbjct: 80  SYATSKRSNIDSTRKRKTAAIKNLYHYLTTVIDTKMDDPTQRLEIPKVKSRDPVYLTLDE 139

Query: 179 MQQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
                +        R        L  G+R S+     ++ +Q     I   K      + 
Sbjct: 140 ALSLLNAVDGEFYERDLAIITLFLNCGIRLSELTNLKIEDIQEETIHI-VGKGNKERNIR 198

Query: 237 LPDG----FMKLLAMTPIGKE--TFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAH 287
           L D         +A+ P   +    F++  K  ++        K    KAG+N    S H
Sbjct: 199 LNDACVETLEAYMAVRPEDTDVPYVFLSKRKTPLSNRTVQSMVKKYVLKAGLNADKISVH 258

Query: 288 GVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTK-GADRIRLGI 333
            +R  +AT+    G      L    G +++   E YT    D +R  I
Sbjct: 259 KLRHTAATLMHKYGQVDIRTLQKVLGHESISTTEIYTHIEVDDVREAI 306


>gi|325678329|ref|ZP_08157952.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
 gi|324109971|gb|EGC04164.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
          Length = 398

 Score =  106 bits (264), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 56/358 (15%), Positives = 112/358 (31%), Gaps = 55/358 (15%)

Query: 16  TRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK--W 73
              GK I  +R           P   +   A   A   +    E       +  ++K   
Sbjct: 20  DIRGKQIVKYRT-------FRPPEGMSEKQAQKEANRQAVLFEEECKIGHCQTGSIKFEA 72

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH----- 128
              ++ K      L   +         ++    G     KI+ + I+  +          
Sbjct: 73  FAEQWFKEYAKLELRPTTYERMRKLTARVYPAIGHLKLDKISRRDIKLFINDLALNGRNF 132

Query: 129 ------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR-KTEGIRPWTKEDMQQ 181
                 +  + I  ++ +  +F +A+  + +  NPC  ++ P   + +    ++ E+  Q
Sbjct: 133 KTGEPLSRKTIIHHVSFISDVFSYAIDMDMLTYNPCEKMKIPHIGEEKEREIYSPEEFDQ 192

Query: 182 -FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIK------------T 226
            F+       + R+ F   +++G R  +      + +  + N+ S++            T
Sbjct: 193 LFELLQQAPLKYRVFFTLAVFTGFRRGELLGLEWKDILWEENVISVRRTSAYTGAEGQYT 252

Query: 227 QKTGTIITVEL---PDGFMKLLAMTP--------------IGKETFFINNDKQKMNATQF 269
            KT T  +      PD   +LL                  +  +  F   D + MN    
Sbjct: 253 GKTKTKRSQRCNRYPDELFELLKEYKVWQDEERERQGEKWVDTDRLFTKWDGRPMNPQTP 312

Query: 270 SIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKG 325
             W+K    K      + H +R   A+I   AG     + A  G    +     YT  
Sbjct: 313 YGWYKEFCQKHDFRFCNIHSMRHSHASILIAAGVDVATVSADLGHSNCNTTLGIYTHE 370


>gi|168208118|ref|ZP_02634123.1| site-specific recombinase, phage integrase family protein
           [Clostridium perfringens E str. JGS1987]
 gi|170660597|gb|EDT13280.1| site-specific recombinase, phage integrase family protein
           [Clostridium perfringens E str. JGS1987]
          Length = 312

 Score =  106 bits (264), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 50/268 (18%), Positives = 102/268 (38%), Gaps = 17/268 (6%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT- 129
           +  L+ EY         ++++  ++E+ F + I   GD    +I TK I     + K   
Sbjct: 18  ISELLEEYITELQVNQCSIHTIKTYETAFKRFICDEGDLRLSEINTKVINHFKNNLKDKV 77

Query: 130 -PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
            P +   +++ +R +F +A +QEY+     L ++  K + +     T E+++   S   +
Sbjct: 78  SPRTINTYISHLRAVFNYAYKQEYMDK---LEIKLIKVQQKVKYVPTDEEIEILLSEGRK 134

Query: 189 GSQP----RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD----- 239
            +      RLA   +  +G+RC +     + +      S    K   +  + +P+     
Sbjct: 135 ETYSNYVCRLACMVMCTTGIRCLEFLSLNIGNFTKEYISTNHTKNRMLRYLPIPNLVSKE 194

Query: 240 --GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA-GVNKSAHGVRKFSATI 296
              ++K         +  F++   ++     F   F+  A K  G     H +R++  T 
Sbjct: 195 IRSYIKNYRKDAKQDDPLFVSVYLRRYTDKGFRKSFRDFAKKKIGHEIGTHCLRRYFITK 254

Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324
           S +  A    L    G         Y K
Sbjct: 255 SLNNNANPILLAKITGHHDTRMFNYYYK 282


>gi|107024205|ref|YP_622532.1| phage integrase [Burkholderia cenocepacia AU 1054]
 gi|116688470|ref|YP_834093.1| phage integrase family protein [Burkholderia cenocepacia HI2424]
 gi|105894394|gb|ABF77559.1| phage integrase [Burkholderia cenocepacia AU 1054]
 gi|116646559|gb|ABK07200.1| phage integrase family protein [Burkholderia cenocepacia HI2424]
          Length = 347

 Score =  106 bits (264), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 46/284 (16%), Positives = 100/284 (35%), Gaps = 21/284 (7%)

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119
           Y++    +  T+   +  Y +          ++ S       +    G +    ++ + +
Sbjct: 50  YLSRAPSEKLTVSAALKRYMEEVSVTK-KATTQRSESFSAKHLEAFFGKYSMAAVSAELV 108

Query: 120 RSGVESRKHTPSSAIQF---LTSMRVLFKWAVRQEY---VAINPCLSVERPKRKTEGIRP 173
               + R     S       L  +  LF+ A+ QE+   +  NP  +V +P       R 
Sbjct: 109 AKYRDERLAAGKSNNTVRLELAMLGHLFRMAI-QEWGIGLTFNPVANVRKPSPGAGRDRR 167

Query: 174 WTKEDMQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKT 229
            ++++ Q+  +     S P L       + +G+R S+        +  +    +++  K 
Sbjct: 168 LSRDEHQRLFAAADAHSNPMLGWIVRLAVETGMRSSEITGLCRSQVDLDRRVVTLRDTKN 227

Query: 230 GTIITVELPDGFMKLLAMT------PIGKETFFINNDKQ--KMNATQFSIWFKAKATKAG 281
           G+   V L     ++L         PI  +  F     +  K     F   +       G
Sbjct: 228 GSSRVVPLTREAAEVLRAALDNPIRPIDTDLVFFGEPGRDGKRKPYVFQKLWTGIVRDLG 287

Query: 282 -VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            V+   H +R  + +   +AG +  E+ +  G K++   + YT 
Sbjct: 288 MVDLHFHDLRHEAVSRLVEAGLSDQEVASISGHKSMQMLKRYTH 331


>gi|291536947|emb|CBL10059.1| Site-specific recombinase XerD [Roseburia intestinalis M50/1]
          Length = 416

 Score =  106 bits (264), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 49/304 (16%), Positives = 100/304 (32%), Gaps = 28/304 (9%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH 128
           T + L   Y +      L  ++ ++ ++     I+   G     +I    +R        
Sbjct: 57  TFQNLYEIYMEDMA-ARLKQSTLLTKKAVLQTHILPFFGSKPINEIKASDVRRWQAKLMS 115

Query: 129 TPSSA-----IQFLTSMRVLFKWAVRQEYVAINPCLSVERP-KRKTEGIRPWTKEDMQQF 182
           +P++       +  T +  +  +A R   +  NPC       K K E +  WT  +   F
Sbjct: 116 SPNNYSQTYLKKINTELNSIINYAKRFYDLNTNPCGKAGTIGKAKAEEMDYWTYNEYIVF 175

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---------------NNIFSIKTQ 227
           +    +     + FE L ++G+R  +        +                       + 
Sbjct: 176 REGVKDKPLSYICFEVLYWTGMREGELLALSPADIDIDNKLISINRTYQRIGGKDVFTSP 235

Query: 228 KT-GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-S 285
           KT  +  T+ +PD   + L+     +     +     +  +  S          G  K  
Sbjct: 236 KTRKSKRTIPIPDFLCQELSDYIQSRYMLDADERLFPVTKSYLSHEMIRGCKITGAKKIR 295

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVVD 344
            H +R   A++  + G  A  L    G + V     TY+      +  + +S  + S+  
Sbjct: 296 IHDIRHSHASLLINQGCDALMLADKLGHEKVSTTLNTYSHLFPHKQQELVHS--LESLQA 353

Query: 345 SDDP 348
           +D P
Sbjct: 354 TDSP 357


>gi|251773381|gb|EES53930.1| phage integrase family protein [Leptospirillum ferrodiazotrophum]
          Length = 344

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 49/333 (14%), Positives = 109/333 (32%), Gaps = 26/333 (7%)

Query: 15  RTRHGKIIYYFR-KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
            T+ G + +  + +  G  ++    +       +   + G   +  +++    + TT+  
Sbjct: 4   ITKRGDLQWQVKIRRKGFTLQSRTFNSKAESETWARLVEGEMDRGVFVDRSESEKTTVAE 63

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPS 131
               Y +      L                   G      I    + +  +   + H+PS
Sbjct: 64  AFDRYEREVAV--LKKGYAQEKYKISYWRKSSFGQRYIANIRPTDLAAWRDEYLKTHSPS 121

Query: 132 SAIQFLTSMRVLFKWAVRQEYVA---INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           +  + L  +  LF  A++ E+     +NP   + +P+      R     +     S    
Sbjct: 122 TVNRLLIVLSHLFTIAIK-EWGMGNLVNPVQQIRKPRFPRGRDRRLLPGEENVLLSACKA 180

Query: 189 -GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLL 245
            G    L   F L +G+R S+      Q +     ++     K G    V L    +++L
Sbjct: 181 YGGDLSLLVRFALETGMRRSEIAGMTWQMVDLKKRTVTLLVTKNGDKRIVPLSPEAVRIL 240

Query: 246 AMTPIG-KETFFINNDKQ-----KMNATQFSIWFKAKATKAG--------VNKSAHGVRK 291
           +  P    +  +               T+    ++ +  K G        ++ + H +R 
Sbjct: 241 STLPRRLDDQVWEGKPGSITQAFMRVVTRARGAYEKECEKKGAKPDPTFLLDLTFHDLRH 300

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK 324
            + +   + G    ++ A  G KT+   + YT 
Sbjct: 301 EATSRFFEKGLNPMQVAAITGHKTLQMLKRYTH 333


>gi|84517249|ref|ZP_01004604.1| Site-specific recombinase XerD-like [Loktanella vestfoldensis
           SKA53]
 gi|84508924|gb|EAQ05386.1| Site-specific recombinase XerD-like [Loktanella vestfoldensis
           SKA53]
          Length = 401

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 52/337 (15%), Positives = 105/337 (31%), Gaps = 19/337 (5%)

Query: 13  KERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           + R   GK   Y +    + + L              A+  +    + I           
Sbjct: 48  RYRDTRGKTR-YAKLADAQHVTLHQARTLCGRMRNKIAMGINPSAEKSIKRQVPTFGDFA 106

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE---SRKHT 129
                Y   +     +  +  +       +I   G     +I+T+ + +  +        
Sbjct: 107 Q--DRYMPFSQANKRSWKTDETLIRT--HLIPTFGKMHLDEISTEDVLNMQQAGLKAGAA 162

Query: 130 PSSAIQFLTSMRVLFKWAVRQEY----VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           P S  + L  +R +F  A  +++    V  NP   V   K   +  R    E+M +    
Sbjct: 163 PGSVNRRLILLRYMFNLAW-RDWKIAGVTENPTHGVRLLKENNKKERYVRAEEMARLYDE 221

Query: 186 WSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGF 241
                   L     FL+ +G R ++   A    +       +    K+G    V L DG 
Sbjct: 222 VCGSQNIMLKHIVAFLVLTGARRNEVLHATWHDINMTTGKWRIPETKSGYARHVPLNDGA 281

Query: 242 MKLLA-MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISAD 299
           M +L  M  + +  +   N             +     +AG+ +   H +R   A++  +
Sbjct: 282 MAVLQQMQDVSRSQYIFGNPNTGKPYVHIYYAWDIARRRAGLPDVRMHDLRHTFASLLVN 341

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
            G++ + +    G   +   + Y        L + N 
Sbjct: 342 NGSSLYAVQMLLGHTQIKTTQRYAHLTQETLLDVSNI 378


>gi|146296400|ref|YP_001180171.1| phage integrase family protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145409976|gb|ABP66980.1| phage integrase family protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 326

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 43/284 (15%), Positives = 92/284 (32%), Gaps = 25/284 (8%)

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
           +    T +  ++ + ++    ++  +++  +       I+  G      I    I+    
Sbjct: 26  KSSSITFQEFVNYWFEAYAKIAVKQSTQKRYRELLIPAIKAIGTKPLSDIKPLDIQKIYM 85

Query: 125 SR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           +   K + S+ ++    +  +FK AV  EY++ NP   V  P  + +    W  E  ++F
Sbjct: 86  NLTGKLSDSTILKLHRLLHEIFKHAVMWEYISDNPVKKVLPPSPEKKVFDVWDVETAKRF 145

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSI-------KTQKTG--- 230
                            L++G+R  +        +  +  I S+       +  KT    
Sbjct: 146 LEVI-RNETIYYPVLIALHTGMRAGEIVSLKWYDVNFEARIISVVKSVRNNRGLKTSDVK 204

Query: 231 ---TIITVELPDGFMKLLA-----MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
              +  +V + D     L      + P   +          +     S  FK    +   
Sbjct: 205 TKTSKRSVYINDVLFSELKNLYETIKPKPDDFVCPRLPTGNLTVGYLSKRFKLLVKRYNF 264

Query: 283 NK-SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTK 324
                H +R   AT+    G     +    G   +   A+TY+ 
Sbjct: 265 PVIRFHDLRHTFATLMLSLGVNTKIVAEILGHSDIKLTADTYSH 308


>gi|157804202|ref|YP_001492751.1| site-specific tyrosine recombinase XerC [Rickettsia canadensis str.
           McKiel]
 gi|166918899|sp|A8F033|XERC_RICCK RecName: Full=Tyrosine recombinase xerC
 gi|157785465|gb|ABV73966.1| tyrosine recombinase [Rickettsia canadensis str. McKiel]
          Length = 305

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 43/284 (15%), Positives = 110/284 (38%), Gaps = 28/284 (9%)

Query: 69  TTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127
           T+++ LI+++++      + + ++ +S+ +     +     ++   +T  HI++      
Sbjct: 4   TSIQELINKWQQYLILQKNYSHHTVVSYNNDLKHFLEFMHYYNSDLVTINHIKTADIRLI 63

Query: 128 HTP-----------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
            +            SS  + L++++  +K+  +   +  +   S++ PK+     +  ++
Sbjct: 64  RSWLAKRNCNNFTTSSISRGLSAVKNFYKFLEKTTQLNSHIIFSIKSPKKTKLLPKSLSE 123

Query: 177 ED-------MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229
           +D       ++++ +      + +     +  +GLR S++      HLQN  F     K 
Sbjct: 124 DDVVISLKHIEEYGNVKWVELRNKALLVLIYATGLRISEALSITKLHLQNLEFIRIIGKG 183

Query: 230 GTIITVELPD-------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
                +            ++++L       E  F     +K+  T F+          G+
Sbjct: 184 SKERIIPWLPIVKNLITQYLEILPYKLGENEPIFRGKQGKKLQPTVFNRELIKLKRFYGL 243

Query: 283 --NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             + +AH  R   A+   + GA    +    G K++   + YTK
Sbjct: 244 PEHLTAHSFRHSFASHLLEHGADLRSIQELLGHKSLSTTQNYTK 287


>gi|34223075|sp|Q9KJF6|XERC_STAAU RecName: Full=Tyrosine recombinase xerC
 gi|9622622|gb|AAF89877.1| putative site-specific recombinase XerC [Staphylococcus aureus]
          Length = 298

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 38/267 (14%), Positives = 93/267 (34%), Gaps = 24/267 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH------TPSSAIQFLT 138
            + + ++  S++    Q  +       + + T   R       +        +S  + ++
Sbjct: 16  RNFSEHTLKSYQDDLIQFNQFLEQEHLQ-LNTFEYRDARNYLSYLYLNHLKRTSVSRKIS 74

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KSFWSEGSQPRL 194
           ++R L+++ +  +   INP + +  PK++    +   +E+M+      +   S+  + R+
Sbjct: 75  TLRTLYEYWMTLDENIINPFVHLVHPKKEKYLPQFSLEEEMEALFTTVEKDTSKNLRDRV 134

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVE--------LPDGFMKL 244
             E L  +G+R S+      Q +    N  ++   K      V         + +     
Sbjct: 135 ILELLYATGIRVSELVNIKKQDIDFYANGVTV-LGKGSKERFVPFGAYCRQSIENYLEHF 193

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK-AGV-NKSAHGVRKFSATISADAGA 302
             +     +   +N   + +              + AGV     H +R   AT   + GA
Sbjct: 194 KPIQSCNHDFLILNMKGEAITERGVRYVLNDIVKRTAGVSEIHPHKLRHTFATHLLNQGA 253

Query: 303 TAHELMATYGWKTVDQAETYTKGADRI 329
               + +  G   +     YT  +++ 
Sbjct: 254 DLRTVQSLLGHVNLSTTGKYTHVSNQQ 280


>gi|307293405|ref|ZP_07573251.1| integrase family protein [Sphingobium chlorophenolicum L-1]
 gi|306881471|gb|EFN12687.1| integrase family protein [Sphingobium chlorophenolicum L-1]
          Length = 305

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 50/285 (17%), Positives = 97/285 (34%), Gaps = 21/285 (7%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-T 129
             LI  + +        + N+ +++ +         G       T   I     +     
Sbjct: 5   AALIDRFLEMMAAERGASRNTLLAYRADLTGAGEIVGGLSGA--TKDRIADLTMAWAELA 62

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---- 185
            SS  +  +++R  + +   +     NP  ++ RP  +    +  + +++    +     
Sbjct: 63  ASSVARKSSALRAFYAFLEEEGLRPDNPSAALPRPVTRRSLPKILSTQEVDSLFALIAGK 122

Query: 186 ----WSEGSQPRLA--FEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELP 238
                      RL+   E L  SGLR ++      + L ++  F I   K G    V + 
Sbjct: 123 LAVEHPSPLDLRLSALIELLYGSGLRATELVSLPRRALASDRPFLILKGKGGRERLVPIS 182

Query: 239 DGFMKLLAMTP---IGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKF 292
           D     +A+          +   + K  ++  +     KA A  AG+     S H +R  
Sbjct: 183 DRARAAVAVWLHHVPADSLWLFPSGKSHVSRIRLYQMVKALAAAAGIAPERVSPHVLRHA 242

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
            AT   + GA    L +  G   +   + YT    R  + + NSR
Sbjct: 243 FATHLLEGGADLRALQSMLGHADIGTTQIYTHVDSRRLVELVNSR 287


>gi|332184082|gb|AEE26336.1| site-specific recombinase, phage integrase family [Francisella cf.
           novicida 3523]
          Length = 375

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 39/277 (14%), Positives = 95/277 (34%), Gaps = 14/277 (5%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR-----SGVE 124
           TL+  I+++     W +    +  + E    + + K  D   +++  K +         +
Sbjct: 98  TLREYINDFY--YDWYNKNNKNTKALEFSLGRRLEKIMDKSLKELNDKKVMIKYLNDYQK 155

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
             K + ++  + L++++ +F  A    Y+  N    V+  K     +R  +  +  +F  
Sbjct: 156 INKTSDATYNRMLSTLKGMFSRAYEFGYIETNNIKDVKLLKINATKVRYLSSSETTRFFE 215

Query: 185 FWSEGS--QPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ--KTGTIITVELP 238
                +  Q +       Y+G+R S+        +        +K++  K+  +  + + 
Sbjct: 216 SLELITSQQAKEIIIIAYYTGMRKSEILTLTFDDIDFDTKQIVLKSENTKSSKVRYIPMH 275

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISA 298
           +  +++L+         F++    K        W K        N   H +R    ++  
Sbjct: 276 EKVLQILSNKNQKSGYIFVSEKTGKPYDNIDRSWTKLMKLSEIENFRFHDLRHNFCSMLV 335

Query: 299 DAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIK 334
             G   + +    G   V   + Y     D  +  I 
Sbjct: 336 MKGVPIYTVAQLAGHADVKTTQIYAHLSPDVKKSAID 372


>gi|325123125|gb|ADY82648.1| site-specific tyrosine recombinase [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 295

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 49/274 (17%), Positives = 94/274 (34%), Gaps = 27/274 (9%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESR----KHTPS 131
           + K     + + ++  ++E      +        D R I    +R  +  R    + + S
Sbjct: 2   WLKERKIQNQSEHTITAYERDVKSFLEFCEHKQLDLRNIEASDLREYLAQRVEQDQLSSS 61

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG-- 189
           S  + LTS+R   KWA + +Y+ INP    +  ++          E + Q          
Sbjct: 62  SMQRHLTSIRQFMKWAEQGKYLEINPTDDFKLKRQPRPLPGMIDIETVNQILDQPMPEKP 121

Query: 190 ------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-----ELP 238
                  + +   E L  SGLR ++     V+ +  N   ++    G    +     +  
Sbjct: 122 VDQQLWLRDKAMLELLYSSGLRLAELQGLTVKDVDFNRQLVRITGKGNKTRIVPFGKKAK 181

Query: 239 DGFMKLLAMTPIGKETF------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVR 290
           +  +  L +  I K  F      FI+     +   Q     K +A +AGV  +   H +R
Sbjct: 182 ESLLNWLKVYKIWKGHFDQNDSVFISLRGGALTPRQIEKRVKLQAQRAGVNVDLHPHLLR 241

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              A+    +      +    G   +   + YT 
Sbjct: 242 HCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTH 275


>gi|296161400|ref|ZP_06844207.1| tyrosine recombinase XerC [Burkholderia sp. Ch1-1]
 gi|295888386|gb|EFG68197.1| tyrosine recombinase XerC [Burkholderia sp. Ch1-1]
          Length = 307

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 43/279 (15%), Positives = 88/279 (31%), Gaps = 30/279 (10%)

Query: 75  ISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTP 130
           I+ Y  +  H   L+ ++   +    +++   +       +T   IR  V        T 
Sbjct: 7   IAAYLSNLEHERRLSAHTLRGYTHELEELKLLAKGRPLESLTAVDIRGAVSRAHAGGLTA 66

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFW 186
            S    L++ R  ++W   +  +  NP  +V  PK+     +  + +D    M+   +  
Sbjct: 67  RSISHRLSAWRAFYRWLAGRVDLPANPVATVRAPKQAKTLPKALSVDDATRLMESPPAAS 126

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRA-------------GVQHLQNNIFSIKTQKTGTII 233
            EG +     E    SGLR ++                 G   L +    +  +     +
Sbjct: 127 PEGLRDHAMLELFYSSGLRLAELVGLDARFADADGYRSAGWLKLDSAEVEVLGKGNRRRV 186

Query: 234 TVELPDGFMKLLAMTPIGKET-------FFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284
                     L A   +  +         F++    +++        K  A  AG+    
Sbjct: 187 VPVGSKALEALGAWLAVRDQMVKHDPHPLFLSARGNRLSPNVVRERVKRAALVAGIPANV 246

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
             H +R   AT    +      +    G  ++   + YT
Sbjct: 247 HPHVLRHSFATHVLQSSGDLRAVQELLGHASITATQVYT 285


>gi|226952079|ref|ZP_03822543.1| site-specific tyrosine recombinase [Acinetobacter sp. ATCC 27244]
 gi|226837171|gb|EEH69554.1| site-specific tyrosine recombinase [Acinetobacter sp. ATCC 27244]
          Length = 310

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 46/286 (16%), Positives = 96/286 (33%), Gaps = 28/286 (9%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVESR----K 127
           L+S + K     + + ++  +++       +  +        +    +R  + SR    +
Sbjct: 11  LLSMWLKERVIQNQSAHTISAYQRDLTDFFKFCEYKQLQLEDVEASDLREYLASRVEQDQ 70

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            + SS  + LTS+R   KWA +  Y+  NP    +  ++          E + Q     +
Sbjct: 71  LSSSSLQRHLTSIRQFMKWAAQGRYLQHNPSADFKLKRQPRPLPGMIDIETVNQILDQTA 130

Query: 188 EG--------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---- 235
                      + +   E L  SGLR ++     ++ +  N   ++    G    +    
Sbjct: 131 PEKLIDQQLWLRDKAMLELLYSSGLRLAELQGLTIKDIDFNRQLLRITGKGNKTRIVPFG 190

Query: 236 -----ELPDGFM--KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286
                 L +     ++           FI+   + +   Q     K +A +AGV  +   
Sbjct: 191 LKAKQSLIEWLKIYRIWQGGFTADSAVFISQQGRALMPRQIENRVKLQAQRAGVNVDLHP 250

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           H +R   A+    A      +    G   +   + YT   D  +L 
Sbjct: 251 HLLRHCFASHMLSASGDLRSVQEMLGHSNLSTTQIYTH-VDFDQLA 295


>gi|312963818|ref|ZP_07778289.1| Tyrosine recombinase [Pseudomonas fluorescens WH6]
 gi|311281853|gb|EFQ60463.1| Tyrosine recombinase [Pseudomonas fluorescens WH6]
          Length = 299

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 41/284 (14%), Positives = 96/284 (33%), Gaps = 23/284 (8%)

Query: 85  GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIR---SGVESRKHTPSSAIQFLT 138
             ++ ++  ++    +++     K     ++ +  + +R   + +  +  +  S  + L+
Sbjct: 16  RQVSPHTLEAYRRDLNKVLAYCEKQQVSSWKSLDIQALRSLIARLHQQGQSSRSLSRLLS 75

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRL 194
           ++R L+ +  R+     +P   +  PK +    +    +   Q      E      + + 
Sbjct: 76  AVRGLYHYLNREGLCDHDPANGLSPPKGERRLPKTLDTDRALQLLDGAVEDDFLAHRDQA 135

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-ELPDGFMKLL-------A 246
             E    SGLR S+     +  L      ++    G+   V  +     + L       A
Sbjct: 136 ILELFYSSGLRLSELTGLNLDQLDLADGLVQVLGKGSKTRVLPVGRKAREALQLWLPLRA 195

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAK-ATKAGVNKSAHGVRKFSATISADAGATAH 305
           +     +  FI+   +++      +  KA    + G N   H +R   A+   ++     
Sbjct: 196 LANPQDDAVFISQQGRRLGPRAIQVRVKAAGERELGQNLHPHMLRHSFASHLLESSQDLR 255

Query: 306 ELMATYGWKTVDQAETYTKGADRIRLG---IKNSRRISSVVDSD 346
            +    G   +   + YT   D   L         R   + DSD
Sbjct: 256 AVQELLGHSDIKTTQIYTH-LDFQHLATVYDSAHPRAKRIKDSD 298


>gi|160880725|ref|YP_001559693.1| integrase family protein [Clostridium phytofermentans ISDg]
 gi|160429391|gb|ABX42954.1| integrase family protein [Clostridium phytofermentans ISDg]
          Length = 291

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 32/260 (12%), Positives = 78/260 (30%), Gaps = 19/260 (7%)

Query: 85  GSLAVNSRISFESYFDQII------RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLT 138
            +   N+  ++     +          S      +          E    + ++  + L 
Sbjct: 16  KNATDNTLSAYRIDLKRWYLFLQENSVSESKKITETMINSFLLQQEKEGKSKATVNRNLV 75

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKSFWSEGSQPRL 194
           S+R    + ++   +  +P   ++ PK +    R  TKE +        S    G + + 
Sbjct: 76  SIRSFLFYLMKHGKLIGDPTERIKPPKVEIAPPRYLTKEQVLSLLSAPDSNTKRGLRDKA 135

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE- 253
             E +  +G++ S+      + +      +  ++      V         L      ++ 
Sbjct: 136 MLELMYATGMKVSEIGGLKKEDINLKFGCVTVRELKKNRVVPFGQAARASLEAYLASEDD 195

Query: 254 ------TFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAH 305
                   F+    + M         K    + G+  + +   +R   A    + GA  +
Sbjct: 196 VRKESPYLFLGRQGEPMTRQGVWKIMKYYGKQIGLEEDLTPQAIRNSFAIHMIENGADLN 255

Query: 306 ELMATYGWKTVDQAETYTKG 325
            +    G   +   + YTK 
Sbjct: 256 SMKELMGHANITATQHYTKQ 275


>gi|215226|gb|AAA32256.1| integrase [Mycobacterium phage L5]
 gi|2739060|gb|AAC31622.1| L5-integrase [Cloning vector pUC-GM-INT]
 gi|2739066|gb|AAC31625.1| integrase [unidentified cloning vector]
 gi|77632626|gb|ABB00291.1| integrase [Integrative shuttle vector pCONINT]
 gi|302749823|gb|ADL66916.1| integrase [Cloning vector pMC1s::WT-HIV2Pr]
          Length = 332

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 53/319 (16%), Positives = 114/319 (35%), Gaps = 41/319 (12%)

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYR 112
              K+   ++   +  T KWL+           LA  +R  +  + ++ I    G+    
Sbjct: 24  DRAKKAAASAITLEEYTRKWLVER--------DLADGTRDLYSGHAERRIYPVLGEVAVT 75

Query: 113 KITTKHIRSGVESRKHT-PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
           ++T   +R+         P++       +R +   AV  + +A NPC  +E+       +
Sbjct: 76  EMTPALVRAWWAGMGRKHPTARRHAYNVLRAVMNTAVEDKLIAENPCR-IEQKAADERDV 134

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS--IKTQKT 229
              T E++    +        R+A   L ++ LR  +      + + ++  +  ++ ++ 
Sbjct: 135 EALTPEELDIVAA--EIFEHYRIAAYILAWTSLRFGELIELRRKDIVDDGMTMKLRVRRG 192

Query: 230 GTII----------------TVELPDGFMKLLAMTPIGK-------ETFFINN-DKQKMN 265
            + +                 V +P    +++      +       E F +      +++
Sbjct: 193 ASRVGNKIVVGNAKTVRSKRPVTVPPHVAEMIRAHMKDRTKMNKGPEAFLVTTTQGNRLS 252

Query: 266 ATQFSIWFKA-KATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            + F+   K   A         H +R   AT +A AGAT  ELMA  G  T   A  Y  
Sbjct: 253 KSAFTKSLKRGYAKIGRPELRIHDLRAVGATFAAQAGATTKELMARLGHTTPRMAMKYQM 312

Query: 325 GAD-RIRLGIKNSRRISSV 342
            ++ R     +   +++  
Sbjct: 313 ASEARDEAIAEAMSKLAKT 331


>gi|310766353|gb|ADP11303.1| site-specific tyrosine recombinase XerC [Erwinia sp. Ejp617]
          Length = 351

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 46/289 (15%), Positives = 103/289 (35%), Gaps = 32/289 (11%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFE---SYFDQIIRKSGDFDYRKITTKHIRSGV--- 123
           TL+ L   +         +  +   +      F       G     +++   + S     
Sbjct: 20  TLRQLTESWLSHLAAAGRSPRTVQGYGERVRAFLAWCEPRGIRYAPQVSLAVLESYQRWL 79

Query: 124 ------ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI-RPWTK 176
                 + ++   +S +  LT++R+LF+W +++  +  NP   +  PK +     + +++
Sbjct: 80  QGYRKADGKQLVVNSQLGVLTAIRMLFRWLLQRHVILYNPAELLALPKEERRLPAQVFSE 139

Query: 177 ED----MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTG 230
           ++    +Q   +    G + R   E L  SG+R S+     +  +     + +++  K G
Sbjct: 140 DETRRVLQSLDAGTPPGLRNRAILELLWSSGIRRSELAGLMLSDVDFTRGVVNVRRGKGG 199

Query: 231 TIITVEL----PDGFMKLLA------MTPIGKETFFINNDKQKMNATQFSIWF-KAKATK 279
               V +         + L                FI++    +     +    +A    
Sbjct: 200 KERVVPVGHAALIWLGRYLKDVRPRLAQRFDSGHLFISHKGTGLAHGTLTAMAGRAIRDG 259

Query: 280 AGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           A + K+   H  R   AT   + GA    + A  G + ++  + YT+ A
Sbjct: 260 AHLKKAGACHIFRHSMATQMLENGADTRHIQAILGHEKLETTQIYTRVA 308


>gi|228990374|ref|ZP_04150339.1| Integrase/recombinase [Bacillus pseudomycoides DSM 12442]
 gi|228768900|gb|EEM17498.1| Integrase/recombinase [Bacillus pseudomycoides DSM 12442]
          Length = 306

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 44/282 (15%), Positives = 94/282 (33%), Gaps = 31/282 (10%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYF---DQIIRKSGDFDYRKITTKHIRSGVE--- 124
           LK+ + ++++   + +L+  +  S+ +      +   +    D R I    ++S +    
Sbjct: 3   LKFAMKDFKEEKEFANLSPRTIQSYMATLHEFQEFCSERELIDTRDIREATVKSYLMYCQ 62

Query: 125 -SRKHTPSSAIQFLTSMRVLFKWAVRQEYV--AINPCLSVERPKRKTEGIRPWTKEDMQQ 181
            +R +   +    L  +++ F +   ++ +    NP   ++  K   + I  +  E ++Q
Sbjct: 63  KTRGNNVVTRNTKLHHLKIFFNYLQHEDIISEKENPIRKMKLAKEDIK-IEVFQDEHIKQ 121

Query: 182 FKSFWSE---------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGT 231
              ++             +      FLL +G R  +        L     ++    K   
Sbjct: 122 MLRYYRRLKTRNKSFYAYRDHTIIIFLLGTGSRLGELINIRWSELDLVNQTVTLFGKARK 181

Query: 232 IITVELPDGFMK--------LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK---A 280
             TV L +  +K        +        E  F   + ++M+     + FK        +
Sbjct: 182 QQTVPLTNKLVKEFCEYKVFMERELGRLPEYVFTTREGKQMSPNSVKLIFKRLKQVMNFS 241

Query: 281 GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
            V  SAH  R   A     AG     L        +   E Y
Sbjct: 242 DVRLSAHTFRHTFAHRCLMAGMDVFTLQRMLRHSNLRMTERY 283


>gi|326570632|gb|EGE20668.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis BC7]
 gi|326574796|gb|EGE24730.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis O35E]
          Length = 330

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 46/297 (15%), Positives = 105/297 (35%), Gaps = 30/297 (10%)

Query: 58  REYINSPRKKPTTLKW-LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY----- 111
               +S +  P++  W  +S +       + + ++  ++++   Q        +Y     
Sbjct: 9   APTHSSHQSDPSSPAWGYLSSWCDELRLQNYSKHTITTYQTALIQFFNFLESDNYLGGDP 68

Query: 112 ----RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167
               R+  T+   + +E  K  P SA   L+++R+ +++ ++Q  +A+NP    +     
Sbjct: 69  LACRRQDLTRFFSTRLEEEKIKPISAKLSLSAIRIFYQFLIKQGVIAVNPTTGYKIKSAP 128

Query: 168 TEGIRPWTKEDMQQFKS-FWSEGS-------QPRLAFEFLLYSGLRCSDS--CRAGVQHL 217
            +      +  ++Q       E +       + +  FE +  SGLR S+      G  + 
Sbjct: 129 RKLPTVADELLIKQLLDQKTPEDTAKAYLWIRDKAMFELMYSSGLRLSELAGLNMGDVNF 188

Query: 218 QNNIFSI-------KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINND-KQKMNATQF 269
              I  +       +    G    + L D             +  FI+     +++    
Sbjct: 189 DTGIVRVLGKGNKTRQVPVGKKAMIALQDYLPHRNLWQKKNCKALFISERHGTRLSTRAI 248

Query: 270 SIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            +  K  AT AG+  +   H +R   A+    +      +    G + +   + YT 
Sbjct: 249 QLRLKVCATMAGIELNMYPHLLRHCFASHVLSSSGDLRAIQEMLGHQNISTTQIYTH 305


>gi|303248297|ref|ZP_07334559.1| integrase family protein [Desulfovibrio fructosovorans JJ]
 gi|302490322|gb|EFL50234.1| integrase family protein [Desulfovibrio fructosovorans JJ]
          Length = 331

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 50/292 (17%), Positives = 103/292 (35%), Gaps = 32/292 (10%)

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK-----SGDFDYRKITT 116
            +   +P T+   +  Y  +      +  +  ++    DQ                K+  
Sbjct: 13  PATPARPETVAAFLD-YLAAQ--KGYSPATLAAYGVDLDQFEEFLRGRGISLATPEKVAR 69

Query: 117 KHIR---SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
           +H R   + +  R+   +S  + L+++R  F++ +R++ VA +P   ++ PK      + 
Sbjct: 70  EHGRGFLAELHRRREAKTSMGRKLSALRGFFRYMLRKKLVAADPLAGLKNPKTDKRQPKA 129

Query: 174 WTKEDMQQFKSFWS---------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
              ++     S            E  +     E L  SGLR +++    +  +       
Sbjct: 130 LNVDEAVALVSPAPGAPAADGSREACRDLALAELLYGSGLRVAEAVGLDLDDVSIAQGVA 189

Query: 225 KT-QKTGTIITVELPDGFMKLLA---------MTPIGKETFFINNDKQKMNATQFSIWFK 274
           +   K G      L D   + L               ++ FF+ +   ++N  Q +    
Sbjct: 190 RVYGKGGKERLAPLSDASRERLREYAMRRAEFTPDPREQAFFLGSRGGRLNRRQAARIVD 249

Query: 275 AKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           A A +AG+ K    H +R   AT   ++GA    +    G   +   + YT 
Sbjct: 250 ALAREAGIAKHTHPHMLRHSFATHLLESGADMRSVQELLGHARLSTTQRYTH 301


>gi|189461054|ref|ZP_03009839.1| hypothetical protein BACCOP_01701 [Bacteroides coprocola DSM 17136]
 gi|265753998|ref|ZP_06089353.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|189432144|gb|EDV01129.1| hypothetical protein BACCOP_01701 [Bacteroides coprocola DSM 17136]
 gi|263235712|gb|EEZ21236.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 376

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 84/232 (36%), Gaps = 23/232 (9%)

Query: 127 KHTPSSA---IQFLTSMRVLFKWAVRQEYVAINP---CLSVERPKRKTEGIRPWTKEDMQ 180
           K  P +A     +          AVR + +  NP       E+PK         T E+++
Sbjct: 154 KGKPIAASTRNTYYQIFNGALNAAVRAKRLLRNPFNEMEKSEKPKMPESVRSYMTIEEVR 213

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT----QKTGTIITVE 236
              +   +  + + A+ F  + GLR SD      +++  +    +     QKT   I + 
Sbjct: 214 ALIATPVQDGRVKNAYLFSCFCGLRISDIVGLKWKNVFVDNGQYRLAVAMQKTKEPIYLP 273

Query: 237 LPDGFMKLL--AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292
           L +  +K +         +  F          +  + + K  A  AG+ K  + H  R  
Sbjct: 274 LSNEALKWMPEREDKAADDHVF-------SLPSNINQYLKPWAEAAGITKRFTFHTARHT 326

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
            AT+    GA  + +    G  +V   + Y K  ++ +   +    ++ + D
Sbjct: 327 FATMMLTLGADLYTVSKLLGHTSVRMTQVYAKIINQKK--DEAVNLVNGLFD 376


>gi|167760042|ref|ZP_02432169.1| hypothetical protein CLOSCI_02414 [Clostridium scindens ATCC 35704]
 gi|167662335|gb|EDS06465.1| hypothetical protein CLOSCI_02414 [Clostridium scindens ATCC 35704]
          Length = 331

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 50/286 (17%), Positives = 99/286 (34%), Gaps = 21/286 (7%)

Query: 72  KWLIS--EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
            W I   EY  S      +  +   +     +++    +   R IT   I   + + K  
Sbjct: 51  SWAIDLEEYLMSKALEGKSPGTVDRYRYELQRLLSYV-NKAVRDITEGDISGYMRAYKAI 109

Query: 130 PSSAIQFLTSMRV----LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
              + Q L ++R      F W   ++ +  NP   VE  K + +  +P+T E+ +     
Sbjct: 110 RQVSNQTLKNVRAVYSSFFAWLRDRDRIRRNPMALVEAIKVEQKIRKPYTDEEREMLLRN 169

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---NNIFSIKTQKTGTIITVELPDG-- 240
            S   + +   EF   + +R S+        ++    ++      K      V L D   
Sbjct: 170 CST-LRDKAMMEFFYSTAVRVSELVTLNRDDIRFTSKDLIVF--GKGSKERRVYLNDRTN 226

Query: 241 --FMKLLAMTPIGKETFFINNDKQK--MNATQFSIWFKAKATKAGVNKS-AHGVRKFSAT 295
               + L     G     ++  +    ++ T      +    +AGV K+  H  R+ S T
Sbjct: 227 LYMKEYLDSRTDGSPALIVSIRRPHSRLSKTGIEDIIRRTGQRAGVEKAHPHRFRRTSLT 286

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
            + + G    E M   G    +    Y    D+  +   + + +S+
Sbjct: 287 NALNRGMPLQEAMVMAGHAKPETTMGYC-TVDQEGVKYHHQKYLSA 331


>gi|255008144|ref|ZP_05280270.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           3_1_12]
          Length = 359

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 84/232 (36%), Gaps = 23/232 (9%)

Query: 127 KHTPSSA---IQFLTSMRVLFKWAVRQEYVAINP---CLSVERPKRKTEGIRPWTKEDMQ 180
           K  P +A     +          AVR + +  NP       E+PK         T E+++
Sbjct: 137 KGKPIAASTRNTYYQIFNGALNAAVRAKRLLRNPFNEMEKSEKPKMPESVRSYMTIEEVR 196

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT----QKTGTIITVE 236
              +   +  + + A+ F  + GLR SD      +++  +    +     QKT   I + 
Sbjct: 197 ALIATPMQEGRVKNAYLFSCFCGLRISDIVGLKWKNVFVDNGQYRLAVAMQKTKEPIYLP 256

Query: 237 LPDGFMKLL--AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292
           L +  +K +         +  F          +  + + +  A  AG+ K  + H  R  
Sbjct: 257 LSNEALKWMPEREDKAADDPVFNL-------PSNINQYLRPWAEAAGITKRFTFHTARHT 309

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
            AT+    GA  + +    G  +V   + Y K  ++ +   +    ++ + D
Sbjct: 310 FATMMLTLGADLYTVSKLLGHTSVRMTQVYAKIINQKK--DEAVNLVNGLFD 359


>gi|298531211|ref|ZP_07018611.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298508821|gb|EFI32727.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
          Length = 394

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 55/339 (16%), Positives = 114/339 (33%), Gaps = 25/339 (7%)

Query: 7   LPPFVTKERTRHGKIIYYFRK----GHGRRIRLPYPHESTFIPAYMSALTGSTP------ 56
           +P F+ + R+  GK  YY R     G  ++ R+      T   A   A    +       
Sbjct: 30  VPGFIMEVRS-TGKSTYYQRYRDKFGRLKQARIAPVDSITLEEARQKAKQIRSQTTMGFD 88

Query: 57  KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKIT 115
            R+     R  P T K  I +  +   +  +   S        + +++   G+    +IT
Sbjct: 89  PRDEAEKNRNTP-TFKEFIRD--QYIPYIQVHKRSWDQDSKMLELRVLPLWGNMKMSEIT 145

Query: 116 TKHIRSG---VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
              ++            P +  +++  ++ +F  A + + +   P   + R +      R
Sbjct: 146 RDDVQQFQSNFLRAGCKPGTVNRYMALVKYIFNLAEKWDVIEKTPARHISRLEDNNCKER 205

Query: 173 PWTKEDMQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----T 226
             + E+ ++            +    E L+ +G R S+      Q L             
Sbjct: 206 YLSSEETKRLLGELKNCKSQVVPDIIELLILTGARKSEVVNLPWQELDLKQGLWTIPPER 265

Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKS 285
            K  T  T+ L  G +++L         +   N K       F   +      AG+ +  
Sbjct: 266 NKAKTRKTIPLSQGALRILEKRKHNGSEYVFPNPKTGGPIKHFHNTWDRVRKNAGIPDVR 325

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            H +R   A++  ++G + +E+    G   +   + Y  
Sbjct: 326 IHDLRHNFASLLVNSGRSLYEVQKLLGHSNISTTQRYAH 364


>gi|47094600|ref|ZP_00232245.1| integrase/recombinase XerC [Listeria monocytogenes str. 4b H7858]
 gi|47017024|gb|EAL07912.1| integrase/recombinase XerC [Listeria monocytogenes str. 4b H7858]
          Length = 241

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 78/221 (35%), Gaps = 19/221 (8%)

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ- 181
           ++ +  + ++  + ++S+R  + + +R+  +  NP   V   K +    + +  E+M+  
Sbjct: 4   LKQKSFSRTTVARKISSLRSFYTFLLRENVINENPFTYVSHAKNQLRLPKFFYSEEMEAL 63

Query: 182 ----FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVE 236
               ++   +   + R+  E L  +G+R S+     +  L  +  +I    K      V 
Sbjct: 64  FQVVYEDNETLTLRDRVLLEVLYGTGIRVSECAGILLPDLDTSYQAILIRGKGNKERYVP 123

Query: 237 L-----------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS 285
                             L++      +   +N+    +             +KA + + 
Sbjct: 124 FGVYAEDAITDYLPERANLMSRYKKSHDALLVNHYGDPLTTRGIRYCLSKIISKASLTRK 183

Query: 286 --AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              H +R   AT   + GA    +    G  ++   + YT 
Sbjct: 184 IHPHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTH 224


>gi|309389348|gb|ADO77228.1| integrase family protein [Halanaerobium praevalens DSM 2228]
          Length = 312

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 44/273 (16%), Positives = 93/273 (34%), Gaps = 33/273 (12%)

Query: 85  GSLAVNSRISFESYFDQIIRKS-------GDFDYRKITTKHIRSGVES----RKHTPSSA 133
              +  +   + S  +Q+ +          DF   ++    I   +        +   + 
Sbjct: 24  KGYSQLTIKEYNSDLNQLHKYLKEELDFKADFKPAEVDRLDISEFLADAVIINDNKAVTR 83

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE-GIRPWTKEDMQQFKSFWSEG--- 189
            + L ++R  +K+ +    V  NP  ++E  K +          ++ +QF +  SE    
Sbjct: 84  NRKLFAIRSFYKYLLHYGIVNQNPAEAIESSKTEIRLEPIYLKLKEAKQFINAISENGGI 143

Query: 190 --SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELP-DGFMKLL 245
              +     +  LY+GLR S+       +L     SIK   K      V L  D  + + 
Sbjct: 144 NRLRDLAIVKLFLYAGLRISELVNLDFDNLDFEDCSIKFYGKGNKERYVPLHHDVILAIK 203

Query: 246 AMTP----------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK----SAHGVRK 291
              P            ++  FI+   ++++     ++ K  A K+G+ +    + H +R 
Sbjct: 204 KYLPERNSIKIKENDARQAIFISRHGKRISPRTIQLFVKKYAKKSGLGRADKITPHKLRH 263

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK 324
             A+           +    G   +   + YT 
Sbjct: 264 TFASTLYRQTKDIKVVQDLLGHANLSTTQIYTH 296


>gi|258405018|ref|YP_003197760.1| integrase family protein [Desulfohalobium retbaense DSM 5692]
 gi|257797245|gb|ACV68182.1| integrase family protein [Desulfohalobium retbaense DSM 5692]
          Length = 306

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 43/264 (16%), Positives = 94/264 (35%), Gaps = 24/264 (9%)

Query: 85  GSLAVNSRISFESYFDQ----IIRKSGDFD----YRKITTKHIRSGVESRKHTPSSAIQF 136
              +  +  ++    +Q    + R+  D D      +   +   + +  +    SS  + 
Sbjct: 22  RGASPATVRAYRRDLEQFEAVLRRRGLDMDRPQQIDREAVQGFAADLHRQGLRRSSVSRK 81

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQP 192
           L+++R  F++ +++++V  NP  SV  PK++    +  T E   +          +G + 
Sbjct: 82  LSAVRRFFRFCLQRQWVDTNPAHSVANPKQEVRHPKVLTVEQALELMDTHLPNDPKGCRD 141

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAM---- 247
               E L  SGLR S++ +  +  ++          K G      L +     L      
Sbjct: 142 LALAELLYGSGLRISEALQLDIDDIEPGRGVVRVVGKGGKERLAPLTEPGQSRLRRYLEQ 201

Query: 248 -----TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
                    +   F+    +++   + +      +  AG+ +  S H +R   AT    +
Sbjct: 202 RRAFVVDPQEPALFLGLRGKRLQRREANRILARLSQTAGLPEEISPHVLRHSFATHLLRS 261

Query: 301 GATAHELMATYGWKTVDQAETYTK 324
           GA    +    G   +   + YT 
Sbjct: 262 GADLRSVQELLGHSRLSTTQRYTH 285


>gi|237667473|ref|ZP_04527457.1| phage integrase family protein [Clostridium butyricum E4 str. BoNT
           E BL5262]
 gi|237655821|gb|EEP53377.1| phage integrase family protein [Clostridium butyricum E4 str. BoNT
           E BL5262]
          Length = 328

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 42/240 (17%), Positives = 89/240 (37%), Gaps = 24/240 (10%)

Query: 111 YRKITTKHIRSGVE----SRKHTPSSAIQFLTSMRVLFKWAV-RQEYVAINPCLSVERPK 165
            + I  + + + +      R ++  +  + + +++  FK+   + + ++ NP + +E PK
Sbjct: 75  LKSIKLRDLYAFLSFVEKYRNNSSYARARKVATLKSFFKYLFGKAKIISDNPAMELESPK 134

Query: 166 RKTEGIRPWT----KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221
                    T       ++         ++      F L  G+R S+ C   ++ ++ +I
Sbjct: 135 INKRHPVYLTLNQSIALLESLDKDDKNYARDYCILTFFLNCGMRLSELCGIQIEKIRGDI 194

Query: 222 FSIKTQKTGTIITVELPDGFMKLL----------AMTPIGKETFFINNDKQKMNATQFSI 271
            SI   K     TV L +  ++ L            +   K+  F++     +N     I
Sbjct: 195 LSI-VGKGDKERTVYLNEACLRALNNYLSVRDDSKASYENKKYLFLSARNAPINKRTVEI 253

Query: 272 WFKAKATKAGV---NKSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGAD 327
             K   T AG      + H +R  +AT+    G      L +  G + +   + YT   D
Sbjct: 254 MIKKHITNAGFTGEKYTPHKLRHTAATLMYKYGNVDIRSLQSILGHENISTTQIYTHVDD 313


>gi|110799420|ref|YP_695812.1| site-specific tyrosine recombinase XerC [Clostridium perfringens
           ATCC 13124]
 gi|110674067|gb|ABG83054.1| site-specific recombinase, phage integrase family [Clostridium
           perfringens ATCC 13124]
          Length = 450

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 43/248 (17%), Positives = 87/248 (35%), Gaps = 24/248 (9%)

Query: 103 IRKSGDFDYRKITTKHIRSGVE----SRKHTPSSAIQFLTSMRVLFKWA-VRQEYVAINP 157
           I   GD   + IT   I + +      R ++  +  + + +++  FK+   + + +  NP
Sbjct: 188 ISDLGDNFIKDITLSDIYAFLAFLEKVRNNSAYARARKVATLKSFFKFLNSKIKLIDENP 247

Query: 158 CLSVERPKRKTEGIRPWTKED----MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG 213
            + +E PK         T +     +           +        L  G+R S+ C   
Sbjct: 248 TVELESPKINKRHPVYLTLDQSITVLNSMDKENKNYYRDYCILTLFLNCGMRLSELCNIE 307

Query: 214 VQHLQNNIFSIKTQKTGTIITVELPDGFMKLL----------AMTPIGKETFFINNDKQK 263
           ++ ++ +  +I   K     TV L +  +  +            T   K+  F+++  + 
Sbjct: 308 IEKIKGDTLTII-GKGNKERTVYLNEASIAAIENYLKNRNDSKATEEAKKYLFLSSKYRP 366

Query: 264 MNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQA 319
           +N     I  K     AG      + H +R  +AT+    G      L    G + +   
Sbjct: 367 INKRSVEILVKKHIENAGFKDQKYTPHKLRHTAATLMYKYGNVDIRSLQNILGHENISTT 426

Query: 320 ETYTKGAD 327
           + YT   D
Sbjct: 427 QIYTHVDD 434


>gi|330815343|ref|YP_004359048.1| phage integrase [Burkholderia gladioli BSR3]
 gi|327367736|gb|AEA59092.1| phage integrase [Burkholderia gladioli BSR3]
          Length = 347

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 46/284 (16%), Positives = 100/284 (35%), Gaps = 21/284 (7%)

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119
           Y++    +  T+   +  Y K          ++ S       +    G +    ++ + +
Sbjct: 50  YLSRAPSEKLTVSAALKRYMKEVSATK-KATTQRSESFSAKHLEAFFGKYSMAAVSAELV 108

Query: 120 RSGVESRKHTPSSAIQF---LTSMRVLFKWAVRQEY---VAINPCLSVERPKRKTEGIRP 173
               + R     S       L  +  LF+ A+ QE+   +  NP  +V +P       R 
Sbjct: 109 AKYRDERLAAGKSNNTVRLELAMLGHLFRMAI-QEWGIGLTFNPVANVRKPSPGAGRDRR 167

Query: 174 WTKEDMQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKT 229
            ++++ Q+  +     S P L       + +G+R S+        +  +    +++  K 
Sbjct: 168 LSRDEQQRLFAAADAHSNPMLGWIVRLAVETGMRSSEITGLCRSQVDLDRRVVTLRDTKN 227

Query: 230 GTIITVELPDGFMKLLAMT------PIGKETFFINNDKQ--KMNATQFSIWFKAKATKAG 281
           G+   V L     ++L         PI  +  F     +  K     F   +       G
Sbjct: 228 GSSRMVPLTREAAEVLRAALDNPIRPIDTDLVFFGEPGRDGKRKPYVFQKLWAGIVRDLG 287

Query: 282 V-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           + +   H +R  + +   +AG +  E+ +  G K++   + YT 
Sbjct: 288 MADLHFHDLRHEAVSRLVEAGLSDQEVASISGHKSMQMLKRYTH 331


>gi|182420557|ref|ZP_02643923.2| site-specific recombinase, phage integrase family [Clostridium
           perfringens NCTC 8239]
 gi|182379696|gb|EDT77175.1| site-specific recombinase, phage integrase family [Clostridium
           perfringens NCTC 8239]
          Length = 361

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 44/248 (17%), Positives = 90/248 (36%), Gaps = 24/248 (9%)

Query: 103 IRKSGDFDYRKITTKHIRSGVE----SRKHTPSSAIQFLTSMRVLFKWA-VRQEYVAINP 157
           I   GD   + IT   I + +      R ++  +  + + +++  FK+   + + +  NP
Sbjct: 99  ISDLGDNFIKDITLSDIYAFLAFLEKVRNNSAYARARKVATLKSFFKFLNSKIKLIDENP 158

Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAG 213
            + +E PK         T +      +   +G+    +        L  G+R S+ C   
Sbjct: 159 TVELESPKINKRHPVYLTLDQSITVLNSMDKGNKNYYRDYCILTLFLNCGMRLSELCNIE 218

Query: 214 VQHLQNNIFSIKTQKTGTIITVELPDGFMKLL----------AMTPIGKETFFINNDKQK 263
           ++ ++ +  +I   K     TV L +  +  +            T   K+  F+++  + 
Sbjct: 219 IEKIKGDTLTII-GKGNKERTVYLNEASIAAIENYLKNRNDSKATEEAKKYLFLSSKYRP 277

Query: 264 MNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQA 319
           +N     I  K     AG      + H +R  +AT+    G      L    G + +   
Sbjct: 278 INKRSVEILVKKHIENAGFKDQKYTPHKLRHTAATLMYKYGNVDIRSLQNILGHENISTT 337

Query: 320 ETYTKGAD 327
           + YT   D
Sbjct: 338 QIYTHVDD 345


>gi|18310145|ref|NP_562079.1| site-specific tyrosine recombinase XerC [Clostridium perfringens
           str. 13]
 gi|18144824|dbj|BAB80869.1| probable integrase/recombinase [Clostridium perfringens str. 13]
          Length = 450

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 44/248 (17%), Positives = 90/248 (36%), Gaps = 24/248 (9%)

Query: 103 IRKSGDFDYRKITTKHIRSGVE----SRKHTPSSAIQFLTSMRVLFKWA-VRQEYVAINP 157
           I   GD   + IT   I + +      R ++  +  + + +++  FK+   + + +  NP
Sbjct: 188 ISDLGDNFIKDITLSDIYAFLAFLEKVRNNSAYARARKVATLKSFFKFLNSKIKLIDENP 247

Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAG 213
            + +E PK         T +      +   +G+    +        L  G+R S+ C   
Sbjct: 248 TVELESPKINKRHPVYLTLDQSITVLNSMDKGNKNYYRDYCILTLFLNCGMRLSELCNIE 307

Query: 214 VQHLQNNIFSIKTQKTGTIITVELPDGFMKLL----------AMTPIGKETFFINNDKQK 263
           ++ ++ +  +I   K     TV L +  +  +            T   K+  F+++  + 
Sbjct: 308 IEKIKGDTLTII-GKGNKERTVYLNEASIAAIENYLKNRNDSKATEEAKKYLFLSSKYRP 366

Query: 264 MNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQA 319
           +N     I  K     AG      + H +R  +AT+    G      L    G + +   
Sbjct: 367 INKRSVEILVKKHIENAGFKDQKYTPHKLRHTAATLMYKYGNVDIRSLQNILGHENISTT 426

Query: 320 ETYTKGAD 327
           + YT   D
Sbjct: 427 QIYTHVDD 434


>gi|251789526|ref|YP_003004247.1| site-specific tyrosine recombinase XerC [Dickeya zeae Ech1591]
 gi|251789532|ref|YP_003004253.1| site-specific tyrosine recombinase XerC [Dickeya zeae Ech1591]
 gi|247538147|gb|ACT06768.1| integrase family protein [Dickeya zeae Ech1591]
 gi|247538153|gb|ACT06774.1| integrase family protein [Dickeya zeae Ech1591]
          Length = 369

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 54/320 (16%), Positives = 105/320 (32%), Gaps = 32/320 (10%)

Query: 49  SALTGSTPKREYINSPRKKPTTLKWLISEY---RKSAHWGSLAVNSRISFESYFDQIIRK 105
            AL            P   P +L  L+  +   R+  +W    + ++   +  F     +
Sbjct: 9   DALLTVDEVYRKPIGPASDPKSLYALLLRFVVWRRERNWSETTLKTQTHHQYRFILWAAE 68

Query: 106 SGDFDYRKIT-------TKHIRSGVESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAIN 156
            G    R IT        +H+    +      +  +    L  + V F W  R   +  +
Sbjct: 69  RGLHYGRDITLPILEHYQRHLYQYRKPNGEPLSTRTQRSQLGPLVVWFGWMTRHHLLLAD 128

Query: 157 PCLSVERPKRKTEGI-RPWTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCR 211
           P   +  P+ +        +  D++Q  +        G + R   E L  +G+R  +   
Sbjct: 129 PASGLVLPRLEKRLPRHILSVADVEQVLALPDLTTLQGIRDRALMELLWSTGIRRGEVAV 188

Query: 212 AGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLL-----AMTP-----IGKETFFINN 259
             V  +    +I +I   K      + +    ++ L     A+ P           F+  
Sbjct: 189 LEVYSVDASRHIVTIVQGKGKKDRVIPVGQRALRWLTYYLQAVRPQLLVNPHCPALFVAL 248

Query: 260 DK-QKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTV 316
           D  + +     +         +G+ K  S H  R   AT   + GA    + A  G  +V
Sbjct: 249 DGIEGLTPNGITNLVSYYIKASGIAKWGSCHLFRHAMATQMLENGADLRWIQAMLGHASV 308

Query: 317 DQAETYTKGADRIRLGIKNS 336
           +  + YT+ + R    +  S
Sbjct: 309 ESTQIYTQVSIRALQAVHAS 328


>gi|307692298|ref|ZP_07634535.1| site-specific tyrosine recombinase XerC [Ruminococcaceae bacterium
           D16]
          Length = 342

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 49/292 (16%), Positives = 104/292 (35%), Gaps = 31/292 (10%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD-YRKITTKHIRSGVE 124
               T+     + R    +  L    R++ ++ FD+I     D D  R +T   + + + 
Sbjct: 25  HSRATVDEYFLDLRSFFRFLKLDKG-RVAKDTPFDEISIDDVDLDLVRGVTLSDVYAYMN 83

Query: 125 ----SRKHTPSSAIQFL-----------TSMRVLFKWAV-RQEYVAINPCLSVERPKRKT 168
                R   P+S+                ++R  +K+   + + +  NP   ++ P+ K 
Sbjct: 84  YLSRDRAVHPNSSDAHYGLAPAARARKAAAIRSFYKYLSSKAKLITENPMQDLDAPRLKK 143

Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226
              R    ++  +  S     +Q R        L  GLR S+     V  ++ +   +  
Sbjct: 144 TLPRYLNLDESVELLSHVDGPNQVRDYCILTLFLNCGLRISELIGLNVTDVRGDQLRVLG 203

Query: 227 QKTGTIITV-------ELPDGFMKLLAMTPIGKETFFIN-NDKQKMNATQFSIWFKAKAT 278
           +     +          L D  M+   +T + +   F+   ++Q++         K   +
Sbjct: 204 KGNKERVLFLNEACRSALDDWMMERSTLTLLDQNALFVTPRNRQRITRAAVHKLVKKHLS 263

Query: 279 KAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
            AG++    S+H +R  +AT+    G     L    G   ++  + YT   +
Sbjct: 264 AAGLDSTKYSSHKLRHTAATLMLQNGVDVRTLQEVLGHDHLNTTQIYTHVDN 315


>gi|134298789|ref|YP_001112285.1| phage integrase family protein [Desulfotomaculum reducens MI-1]
 gi|134051489|gb|ABO49460.1| phage integrase family protein [Desulfotomaculum reducens MI-1]
          Length = 294

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 39/277 (14%), Positives = 91/277 (32%), Gaps = 29/277 (10%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR------KSGDFDYRKITTKHIRSGVE 124
           +   I EY+K       +  +   +++  ++  +               +  K  +  + 
Sbjct: 2   INSFILEYQK----QDRSPLTVAGYQTELEKFQQWLWTTVNEPLERATDMDVKDYKQYLL 57

Query: 125 S-RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
           + +K  PS+  + L  +R  + WAV Q  +  NP  +V+  + +    +   + D  + K
Sbjct: 58  TVKKQKPSTVNRGLKVLRKYYSWAVIQGLIQYNPAANVKLVRVQQAAPKWLDRIDAARLK 117

Query: 184 SF-----WSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTI 232
                   +   + R       +L +GLR ++     +  +    +     ++  K    
Sbjct: 118 RAVLNDEHNAFKRARDYAILLLMLGAGLRVAEVAALELADIIMSERKGTVIVRKGKGNKY 177

Query: 233 ITVEL-------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS 285
             V L        + ++ +         TF    ++  +         +  A K+ V  S
Sbjct: 178 AEVPLNKDVRQALNEYLDIRKTVKCSDSTFLFLGERGPIKKRAIQFRVEKYAGKSSVKAS 237

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           AH +R        + G   + +        V+    Y
Sbjct: 238 AHQLRHTFCKELINHGEPLNVVAHLSRHSDVNTTMRY 274


>gi|256840356|ref|ZP_05545864.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256737628|gb|EEU50954.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 386

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 49/261 (18%), Positives = 95/261 (36%), Gaps = 18/261 (6%)

Query: 92  RISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFL----TSMRVLFKWA 147
           R+  +    + + K     +        R+  + + +    A   L     +++ +F  A
Sbjct: 122 RVDKKDILLKDVSKDEICGFFDYMRNKYRNKRQIKTNGGRLADYTLLLFEETVKAIFNKA 181

Query: 148 VRQEYVAINPC---LSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR---LAFEFLLY 201
           +R+  V  NP      +ER     +     T E++ +F +  +E    R   LAF     
Sbjct: 182 MREGLVKFNPVHSLNKLERFHAPDKHREYLTPEELTRFLAVEAECENERTVQLAFGLSSM 241

Query: 202 SGLRCSDSCRAGVQHLQ--NNI--FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI 257
           + LR  D        ++  + +   SI  +KT     + L +    LL           +
Sbjct: 242 TALRLGDMQHLRWCDIKMIDGVPTISIIQRKTKRPAIIPLNEMAQSLLPPRTDDNPESLV 301

Query: 258 NNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKT 315
            +  +K  +   S + +    KAG+ K    H  R  +A+++  AGA    +    G  +
Sbjct: 302 FHLVKK--SDNVSKYVRRLKEKAGIEKDLTYHCSRHTTASLAISAGADISAVKDVLGHGS 359

Query: 316 VDQAETYTKGADRIRLGIKNS 336
           +   E Y K A   ++   N 
Sbjct: 360 ITSTEVYAKVALEKKIEAVNL 380


>gi|83643202|ref|YP_431637.1| site-specific tyrosine recombinase XerC [Hahella chejuensis KCTC
           2396]
 gi|83631245|gb|ABC27212.1| tyrosine recombinase XerC [Hahella chejuensis KCTC 2396]
          Length = 301

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 42/269 (15%), Positives = 88/269 (32%), Gaps = 23/269 (8%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGV---ESRKHTP 130
            Y  S      +V++  S+     ++      +G   ++ + T  +R  +     R    
Sbjct: 12  AYLHSER--RYSVHTVSSYNRDLRRVVAYCDANGVASWKDLHTPQLRQALSEFHRRGLGS 69

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK----SFW 186
            S  + L+++R  +++ +R+  V  NP   V  PK           +  +Q         
Sbjct: 70  RSLHRLLSTVRRFYEYLLRERLVYENPANGVRAPKMTKRLPATMDVDQAKQLLDSPVEEE 129

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE--------L 237
               + +   E    SG+R S+     + HL  +    +   K G    V         L
Sbjct: 130 ELEIRDQAIAELFYTSGIRLSELAGLDLAHLDLSEGLARVLGKGGKERLVPVGGQARKAL 189

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSAT 295
            D      ++   G+   F++    +++        +  A K G +     H  R   A+
Sbjct: 190 RDWLQARASLAVAGEPAVFVSLRGGRLSRRSIQERLRQWAQKKGFSGRLYPHLFRHSCAS 249

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTK 324
              ++      +    G   +   + YT 
Sbjct: 250 HLLESSGDLRAVQELLGHADISTTQIYTH 278


>gi|302389856|ref|YP_003825677.1| integrase family protein [Thermosediminibacter oceani DSM 16646]
 gi|302200484|gb|ADL08054.1| integrase family protein [Thermosediminibacter oceani DSM 16646]
          Length = 323

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 44/290 (15%), Positives = 93/290 (32%), Gaps = 46/290 (15%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQ----IIRKSGDFDYRKITTKHIRSGVESRK--- 127
           I  +    +  +L+  +  S+E         +  K G  +  K+ T HIR  ++      
Sbjct: 8   IENFLLYCNAKNLSKRTIGSYEQSLRLFAQFLKEKYGIEEVSKVNTGHIRQYLDYLGKRG 67

Query: 128 --------------------------HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV 161
                                      T + A   L +++V F W   +  +  NP   +
Sbjct: 68  KYTVIIDETKKEINNPENRQDFGQPLSTTTKANY-LRNLKVFFNWLYGEGEIPKNPVAKI 126

Query: 162 ERPKRKTEGIRPWTKEDMQQ----FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217
           E+ K + +  +P +++D+++    F      G +  + F+FLL +G R  ++       +
Sbjct: 127 EQIKPQRKVKKPLSEQDLKRIANCFVKSTFTGYRNYVIFKFLLDTGARIQETLSLTHNDI 186

Query: 218 QNNI--FSIKTQKTGTIITVELPDGFMKLLAMTP------IGKETFFINNDKQKMNATQF 269
                  +++  K      V L    ++ +          +  +  F       +    +
Sbjct: 187 DLKFRVVTLRNTKNKQERKVYLSPKMLQEMKNWLKYKERYVSSDLIFPTKRGTPLTVHSY 246

Query: 270 SIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
               +      G++ S H +R   A      G     L    G   V   
Sbjct: 247 EKQLRDAGKLVGIDISPHMLRNQFARYYILNGGNFPMLSKLLGHSDVKVT 296


>gi|289664010|ref|ZP_06485591.1| site-specific tyrosine recombinase XerC [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 305

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 39/267 (14%), Positives = 91/267 (34%), Gaps = 27/267 (10%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGD-------------FDYRKITTKHIRSGV---ESRKH 128
             ++ ++  ++      ++  + +              D  ++ + H+R  V     R  
Sbjct: 15  RQVSAHTLDAYRRDLAALVAWTAEHNTEDGAQQTATPLDTAQLDSAHLRQFVAAEHRRGL 74

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF--- 185
           +P S  + L++ R  + W ++   +A +P  ++  PK   +  +    ++  +       
Sbjct: 75  SPKSLQRRLSACRSYYAWLLKHGRIASSPAAAMRAPKSPRKLPQVLDADEAVRLVEVPTD 134

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPD----G 240
              G + R   E    SGLR S+ C    + L  ++   +   K      V +       
Sbjct: 135 APLGLRDRALLELFYSSGLRLSELCALRWRDLDLDSGLVMVLGKGSKQRLVPVGSHAIAA 194

Query: 241 FMKLLAMTPIGKET-FFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS 297
             + L  +    +T  F       ++     I  K  A + G+  +   H +R   A+  
Sbjct: 195 LREWLRDSGASADTHVFPGRAGGAISQRAVQIRIKQLAVRQGMFKDVHPHMLRHSFASHI 254

Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324
            ++      +    G   +   + YT 
Sbjct: 255 LESSGDLRGVQELLGHSDIATTQIYTH 281


>gi|258622840|ref|ZP_05717857.1| tyrosine recombinase XerC [Vibrio mimicus VM573]
 gi|258584901|gb|EEW09633.1| tyrosine recombinase XerC [Vibrio mimicus VM573]
          Length = 266

 Score =  106 bits (264), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 32/243 (13%), Positives = 80/243 (32%), Gaps = 17/243 (6%)

Query: 99  FDQIIRKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI 155
             + + + G   + ++    +R  V   + +    SS    L+S+R    + + +  +  
Sbjct: 1   MARYLAQMGLTSWPQLDAAWVRQLVVLGKRQGMKASSISTRLSSLRSFLDFLILRGELQA 60

Query: 156 NPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLAFEFLLYSGLRCSDSCRA 212
           NP   V  P+++    +    ++M Q            + R   E +  SGLR ++    
Sbjct: 61  NPAKGVSAPRKQRPLPKNLDVDEMAQLLEVTDDDPLSIRDRAIMELMYGSGLRLAELVSI 120

Query: 213 GVQHL--QNNIFSIKTQKTGTIITVE-------LPDGFMKLLAMTPIGKETFFINNDKQK 263
            V+ +  ++    +  +                + +       +    +   F++    +
Sbjct: 121 DVKDVNLRDGEIRVIGKGNKERKVWFAGQAQEWVGNWLKLRSQLANSDETALFVSKLGTR 180

Query: 264 MNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
           ++             K  V  + S H +R   AT   ++      +    G + +   + 
Sbjct: 181 ISHRSVQKRMAEWGQKQAVASHISPHKLRHSFATHMLESSNNLRAVQELLGHENIATTQI 240

Query: 322 YTK 324
           YT 
Sbjct: 241 YTH 243


>gi|258517018|ref|YP_003193240.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771]
 gi|257780723|gb|ACV64617.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771]
          Length = 321

 Score =  106 bits (264), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 43/277 (15%), Positives = 86/277 (31%), Gaps = 24/277 (8%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK--ITTKHIRSGVESRK 127
           + +  + E+         +  +   +  +     R   D D     I  + I   +   +
Sbjct: 24  SWEEALQEFLLLKKAEGKSERTIKDYGYHIKHFFRLYPDTDLADAGILKRRIIDYMAE-E 82

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
             P+     L  M+  F W V++  +  NP    +R K     ++     D++  K   +
Sbjct: 83  VKPAYYNNKLVYMKTFFNWCVKERVLIENPVKEFKRRKADERIVQF----DLELLKKLLA 138

Query: 188 E-------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI----KTQKTGTIITVE 236
                   G +        L SG+R  ++    +  +      +    +  KT    T+ 
Sbjct: 139 IPDQSTYPGLRDYALLLLQLDSGIRPKEALSLLISDVNFKSLEVYIRAENAKTRVSRTLP 198

Query: 237 LPD----GFMKLLAMTPIG--KETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVR 290
           +         KL+ + P        F + +  KM    +         K G     + +R
Sbjct: 199 ISPITAKAIQKLINVRPSDWNDVPIFCSCEGNKMLGNTWYKRLSKYGEKLGTKLYPYQLR 258

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
              A      G  +  L  T G   ++  + Y   AD
Sbjct: 259 HTFALEFLRNGGNSFALQKTLGHADLNMTKRYVSLAD 295


>gi|18479027|gb|AAL73390.1|AF416734_1 site-specific recombinase [Pseudomonas fluorescens]
          Length = 298

 Score =  106 bits (264), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 36/273 (13%), Positives = 93/273 (34%), Gaps = 23/273 (8%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQII-----RKSGDFDYRKITT-KHIRSGVE 124
           L       R       ++ ++  ++    ++++     +  G +    I   + + + + 
Sbjct: 5   LDAYCEHLRSE---RQVSPHTLSAYRRDLEKVVGWCQKQNIGSWAALDIQRLRSLIARLH 61

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
            +  +  S  + L+++R L+ +  R+     +P   +  PK +    +    +   Q   
Sbjct: 62  QQGQSSRSLARLLSAVRGLYHYLNREGLCDHDPATGLAPPKGERRLPKTLNTDRALQLLE 121

Query: 185 FWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV----- 235
              E      + +   E    SGLR S+     +  L      ++    G+   +     
Sbjct: 122 GAVEDDFLAQRDQAILELFYSSGLRLSELTGLNLDQLDLADGMVQVLGKGSKTRLLPVGR 181

Query: 236 ---ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK-ATKAGVNKSAHGVRK 291
              E  + ++ L A+T    +  F++   +++      +  KA    + G N   H +  
Sbjct: 182 KAREALEQWLALRALTNPADDAVFVSQQGKRLGPRAIQLRVKAAGERELGQNLHPHML-H 240

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK 324
             A+   ++      +    G   +   + YT 
Sbjct: 241 SFASHLLESSQDLRAVQELLGHSDIKTTQIYTH 273


>gi|88705870|ref|ZP_01103579.1| prophage integrase [Congregibacter litoralis KT71]
 gi|88699941|gb|EAQ97051.1| prophage integrase [Congregibacter litoralis KT71]
          Length = 399

 Score =  106 bits (264), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 52/297 (17%), Positives = 99/297 (33%), Gaps = 19/297 (6%)

Query: 48  MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKS 106
             A            +  +K  T+K L  ++ +         +++  ++   D+ II   
Sbjct: 77  WLADVRRGGDPGAAKAEARKAPTVKELCVKFMEDYSRHRNKPSTQRGYQGNIDRNIIPIL 136

Query: 107 GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI--NPCLSVERP 164
           G F  + +    + + ++   + P  A + L+ +R +F  A    Y     NPC  +   
Sbjct: 137 GRFKVKDVKRADVATMMKKLDYKPGEANKALSVLRKMFNLAEIWGYRPDGSNPCRHIP-L 195

Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGSQPRL-------AFEFLLYSGLRCSDSCRAGVQHL 217
               +  R  T  +M +      +    RL       A         R S+      + +
Sbjct: 196 YTGGKTTRLITDGEMAKLFKHLDQVEAERLVPYVIPLAIRLQFEFAARRSEIVLLEWEWI 255

Query: 218 Q--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG-KETFFINNDKQKMNATQFSIWFK 274
              N        KTG +    + +   +LL+  P      + + + +  +    +  ++ 
Sbjct: 256 DLENRRVVWPDSKTGGMSK-PMSEEAYRLLSTAPRQEGGRYVLPSPRNPLTHLTYGEYYG 314

Query: 275 AKA---TKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
                   AGV     HG+R  SAT  A++G      M     KTV     Y    D
Sbjct: 315 GWTRTLKAAGVTHVGTHGIRHRSATDIANSGIPVKVGMVLTAHKTVTMFMRYIHTED 371


>gi|171910181|ref|ZP_02925651.1| hypothetical protein VspiD_03395 [Verrucomicrobium spinosum DSM
           4136]
          Length = 318

 Score =  106 bits (264), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 35/262 (13%), Positives = 83/262 (31%), Gaps = 22/262 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGD-FDYRKITTKHIRSGV-ESRKH--TPSSAIQFLTSM 140
            S +  +  ++        +       +  +T    R  + E  K     ++      ++
Sbjct: 40  RSASPKTLENYRHAMSTFRKSQPACMTWESLTPDDFRLYLYEQMKAELGRATIRLHFAAL 99

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF---------KSFWSEGSQ 191
           R  FK+  R+  +  NP L V+ PK + +     T   ++           +      + 
Sbjct: 100 RSFFKFLTRRRGLVKNPLLEVQLPKPEKKLPVVLTLSQVETLLNLPLNTPREKQAPAWAP 159

Query: 192 PR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-----ELPDGFMKL 244
            R     E    +G+R S+     V+ +     +++    G    +            + 
Sbjct: 160 ERDAAILELFYSTGVRISELASLNVEDVDVYSETLRVIGKGRKERICPVGGPAIRAMQRY 219

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302
            +   +     F +   ++M     +   +     +G+    + H +R   AT   + GA
Sbjct: 220 QSRLGVYSGPLFRSKVGKRMTNQAINNVVEKYWKLSGLPVQVTPHKLRHSFATHLLNNGA 279

Query: 303 TAHELMATYGWKTVDQAETYTK 324
               +    G  ++   + YT 
Sbjct: 280 DLRSVQTLLGHASLSTTQIYTH 301


>gi|94969888|ref|YP_591936.1| tyrosine recombinase XerD subunit [Candidatus Koribacter versatilis
           Ellin345]
 gi|94551938|gb|ABF41862.1| tyrosine recombinase XerD subunit [Candidatus Koribacter versatilis
           Ellin345]
          Length = 313

 Score =  106 bits (264), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 40/274 (14%), Positives = 91/274 (33%), Gaps = 29/274 (10%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHTP---SSAIQFLTS 139
             L+  S  ++     Q                 + +R  ++S         +  + L+S
Sbjct: 22  KGLSRLSVSAYSKDMQQFAEFLAKRKRSLDAAKRQDVRDFLDSLFSNQLDGRTVARKLSS 81

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----------EG 189
            R  +K+ +    +  +P L++E P++     +  + +++ Q                  
Sbjct: 82  SRQFYKYLLLDRRIEHDPTLNIESPRQWKVLPKSLSADEVLQTLQGPPRVLDTKESQALA 141

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVEL----------- 237
            + R   E      LR S+     ++  + ++  +  +  G     V L           
Sbjct: 142 LRDRAMLEVFYAGALRVSEMIGVRMEDAKLDLGYMMVRGKGDKERIVPLGQSALVAVKSY 201

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATIS 297
            +   ++L          F+    +K++  +      A +  +G + S H +R   AT  
Sbjct: 202 LESGREVLCAGKTS-PILFVGKGCRKLSRQRVWQMVSAASQASGRHASPHMLRHSCATHM 260

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGA-DRIR 330
            + GA    +    G   +   + YT  A DR++
Sbjct: 261 VENGADLRTVQTILGHADISTTQIYTHLALDRLK 294


>gi|256423767|ref|YP_003124420.1| integrase family protein [Chitinophaga pinensis DSM 2588]
 gi|256038675|gb|ACU62219.1| integrase family protein [Chitinophaga pinensis DSM 2588]
          Length = 284

 Score =  106 bits (264), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 35/273 (12%), Positives = 97/273 (35%), Gaps = 23/273 (8%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS- 132
            I +++         ++++    +   + +   G     +I+   I    E     P   
Sbjct: 4   YIIQFQNYLQQSGYGLSTQRMLPACVREFLEYGGFKSIVEISPGIIVLFYEWLHIRPLKY 63

Query: 133 ---------AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
                       ++ +++V F W    + +  NP   ++  +  +      + E ++   
Sbjct: 64  RSGALSGIMISHYVYALKVFFSWQESSDGLQYNPMSGLKFRRHASGRREALSVEVVEALF 123

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDG- 240
           +  +   + ++        GLR S++    V+ +  ++ +  +++ K  +   + L    
Sbjct: 124 T-AAISMREKVMLHLFYSCGLRRSEAEMLNVRDVQVRHRLLYVRSGKGASRRVIPLTGKV 182

Query: 241 -------FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRK 291
                    +      + K  F +N + ++M+ + ++   K    +AG+    S H +R 
Sbjct: 183 AGELGVYLEEYRKSGAVEKGAFMLNREGRRMSGSSYNRLLKGLVGRAGLWQGISLHYLRH 242

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK 324
             AT     G +   +    G + ++  + Y K
Sbjct: 243 SIATHLLQGGMSLEYVRDFLGHRHLEATQIYAK 275


>gi|317063575|ref|ZP_07928060.1| integrase/recombinase [Fusobacterium ulcerans ATCC 49185]
 gi|313689251|gb|EFS26086.1| integrase/recombinase [Fusobacterium ulcerans ATCC 49185]
          Length = 298

 Score =  105 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 43/272 (15%), Positives = 91/272 (33%), Gaps = 24/272 (8%)

Query: 75  ISEYRKSAHWG-SLAVNSRISFES-------YFDQIIRKSGDFDYRKITTKHIRSGVESR 126
           I ++   A +G + ++N+  S +        Y   I +         +  +     ++  
Sbjct: 12  IKDFLYYAEFGENKSLNTIKSLKKDLSQLSEYLKNIEKIEEASKITPVMLRGFIIALQKN 71

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
           +    S  + L+S+R  FK+ ++   +  NP   +  P  + E     T E++ + +   
Sbjct: 72  EVGKRSINRKLSSLRSFFKYLMKNNLIKNNPIEIINSPSFEAEKPDILTLEEINKLRDVI 131

Query: 187 ----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD--- 239
               + G + RL  E L  SG+  ++    G Q    +  ++          V       
Sbjct: 132 NTDNANGLRDRLILELLYSSGITSTEMLSIGEQVFDLDSRTLLVSNGKANRYVFFSQRTR 191

Query: 240 -------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290
                     K            F+N    +++           A +AG+ +  S +  R
Sbjct: 192 EYFKRYVEAKKEKYGDKYNSSILFVNGSGSRLSDRSLRRIVDRYAARAGITREISPYSFR 251

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETY 322
              A      G + + L    G  T++  + Y
Sbjct: 252 HTFAVHLLTKGMSLNFLQELMGHVTIESTKIY 283


>gi|257469328|ref|ZP_05633422.1| integrase family protein [Fusobacterium ulcerans ATCC 49185]
          Length = 294

 Score =  105 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 43/272 (15%), Positives = 91/272 (33%), Gaps = 24/272 (8%)

Query: 75  ISEYRKSAHWG-SLAVNSRISFES-------YFDQIIRKSGDFDYRKITTKHIRSGVESR 126
           I ++   A +G + ++N+  S +        Y   I +         +  +     ++  
Sbjct: 8   IKDFLYYAEFGENKSLNTIKSLKKDLSQLSEYLKNIEKIEEASKITPVMLRGFIIALQKN 67

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
           +    S  + L+S+R  FK+ ++   +  NP   +  P  + E     T E++ + +   
Sbjct: 68  EVGKRSINRKLSSLRSFFKYLMKNNLIKNNPIEIINSPSFEAEKPDILTLEEINKLRDVI 127

Query: 187 ----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD--- 239
               + G + RL  E L  SG+  ++    G Q    +  ++          V       
Sbjct: 128 NTDNANGLRDRLILELLYSSGITSTEMLSIGEQVFDLDSRTLLVSNGKANRYVFFSQRTR 187

Query: 240 -------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290
                     K            F+N    +++           A +AG+ +  S +  R
Sbjct: 188 EYFKRYVEAKKEKYGDKYNSSILFVNGSGSRLSDRSLRRIVDRYAARAGITREISPYSFR 247

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETY 322
              A      G + + L    G  T++  + Y
Sbjct: 248 HTFAVHLLTKGMSLNFLQELMGHVTIESTKIY 279


>gi|21910514|ref|NP_664782.1| putative integrase - phage associated [Streptococcus pyogenes
           MGAS315]
 gi|28876262|ref|NP_795429.1| putative integrase [Streptococcus pyogenes phage 315.2]
 gi|71910865|ref|YP_282415.1| integrase [Streptococcus pyogenes phage 5005.1]
 gi|21904713|gb|AAM79585.1| putative integrase - phage-associated [Streptococcus pyogenes phage
           315.2]
 gi|71853647|gb|AAZ51670.1| phi5005.1 integrase [Streptococcus pyogenes phage 5005.1]
          Length = 362

 Score =  105 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 49/302 (16%), Positives = 95/302 (31%), Gaps = 27/302 (8%)

Query: 48  MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG 107
            +A       +  ++ P+    T   L  ++ K             +  +    I+ K  
Sbjct: 40  QAARETLISLQAELDKPKSS-MTFGALTDQWLKEYEKTVQCSTYLKTERNINKHILPKLD 98

Query: 108 DFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167
                 I    I+   E   +      + L  +R +   AVR  Y+  NP L +  PK K
Sbjct: 99  KVKIGDINPLLIQRLTEEWCNDLKYGGKILGLVRNILNLAVRYGYINNNPALPITPPKIK 158

Query: 168 TEG---IRPWTKEDMQQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222
            +       +T + ++QF     +         F  L ++G+R  +        L  N  
Sbjct: 159 RKRKMNNNFYTLDQLKQFLELVEKTDNIEKIALFRLLAFTGIRKGELLALTWDDLNGNTL 218

Query: 223 SIKTQKTGTIITVEL------------------PDGFMKLLAMTPIGKETFFINNDKQKM 264
           SI    T T + +E+                   +  ++L    P     F  +     M
Sbjct: 219 SINKAVTRTQVGLEIDVTKTKSSDRLISLDDETLEILLELHETFPTSTLMF-QSESGGIM 277

Query: 265 NATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TY 322
             +    W         + + + HG R   A++  ++G +  ++    G   +      Y
Sbjct: 278 TPSLPRKWLLQIIKGTDLPQITIHGFRHTHASLLFESGLSLKQVQHRLGHGDLQTTMNVY 337

Query: 323 TK 324
           T 
Sbjct: 338 TH 339


>gi|258543858|ref|ZP_05704092.1| tyrosine recombinase XerC [Cardiobacterium hominis ATCC 15826]
 gi|258520898|gb|EEV89757.1| tyrosine recombinase XerC [Cardiobacterium hominis ATCC 15826]
          Length = 301

 Score =  105 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 39/261 (14%), Positives = 91/261 (34%), Gaps = 21/261 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----KHTPSSAIQFLTSM 140
              A  +  ++     Q      D D   +  + +++ +       K++P++  Q   ++
Sbjct: 15  RGKAAQTLATYRRLLYQFAEAHRDRDLHALEPRDLQNYLTKTLGGGKYSPATLNQHRAAL 74

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEG-IRPWTKEDM----QQFKSFWSEGSQPRLA 195
           R  ++W  R   +  +P  +++ P++  +      T E +    +   +      +    
Sbjct: 75  RSYYRWLHRLRGLPTDPAAALKLPRQARQPLPDALTPEQITTLLEAPATDNPNLIRDHTI 134

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAM------- 247
            E    +GLR ++      + L  ++   I   K G    + +     + LA        
Sbjct: 135 LELFYSAGLRLAELASLDNRDLGPDSEHHIIRGKGGVERLIFIGSKAREALARWQTVRGQ 194

Query: 248 --TPIGKETFFINNDKQKMNATQFSIWFKAKATK--AGVNKSAHGVRKFSATISADAGAT 303
                 +   F+N +  ++     ++  KA A +   GVN   H +R   A+    +   
Sbjct: 195 LLKKADEPALFLNKNGGRLTERGIALRLKAYAAERLPGVNVHPHMLRHTFASHILQSSGD 254

Query: 304 AHELMATYGWKTVDQAETYTK 324
              +    G K +   + YT 
Sbjct: 255 LRSVQELLGHKNLATTQIYTH 275


>gi|188587679|ref|YP_001921083.1| site-specific tyrosine recombinase XerC [Clostridium botulinum E3
           str. Alaska E43]
 gi|188497960|gb|ACD51096.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum E3 str. Alaska E43]
          Length = 329

 Score =  105 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 47/281 (16%), Positives = 102/281 (36%), Gaps = 29/281 (10%)

Query: 75  ISEYRKSA----HWGSLAVNSRISFESYFDQIIRKSGDFDY-RKITTKHIRSGVE----S 125
           I+ Y+K       +  L        +  F+ I     D ++ + I  + + + +      
Sbjct: 35  IAAYKKDLTIFFRFMKLYRGIVKDKKIEFEDIDITDIDDEFLKSIQLRDLYAFMSFIEKY 94

Query: 126 RKHTPSSAIQFLTSMRVLFKWAV-RQEYVAINPCLSVERPKRKTEGIRPWTKED----MQ 180
           R ++  +  + + +++  FK+   + + +  NP   +E PK         T +     + 
Sbjct: 95  RNNSTYARARKVATLKSYFKFLQGKAKIIVDNPTTELESPKINKRQPVYLTLDQSIHLLS 154

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
                    ++        L  G+R S+ C   ++ ++N+I +I   K     TV L + 
Sbjct: 155 SLDKNNKNYARDYCILTLFLNCGMRLSELCGISIEKIRNDILAII-GKGNKERTVYLNEA 213

Query: 241 FMKLL----------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAH 287
            +K +             P  K+  F+++  + +N     I  K     AG+     + H
Sbjct: 214 CLKSIENYMRIRDDSKALPEYKKFLFLSSHNKPINQRTVEIMIKKHVKNAGLTDAKYTPH 273

Query: 288 GVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGAD 327
            +R  +AT+    G      L    G + +   + YT   +
Sbjct: 274 KLRHTAATLMYKYGDVDIRSLQNILGHENISTTQIYTHVDN 314


>gi|16420406|gb|AAL20787.1| putative phage integrase protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|301158393|emb|CBW17900.1| Integrase [Salmonella enterica subsp. enterica serovar Typhimurium
           str. SL1344]
 gi|323130155|gb|ADX17585.1| putative phage integrase protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
          Length = 298

 Score =  105 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 49/287 (17%), Positives = 97/287 (33%), Gaps = 34/287 (11%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--- 126
           T+   I  Y       +L+VN+     +    +  K G+    ++TT+HI   +ES    
Sbjct: 14  TVSAWIDRYEVLLQRRNLSVNTYKIRSNQLATVREKMGEIILAEVTTRHIAKFLESWITE 73

Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
            K+T + A++  + +  +F+ A+ + ++  NP  +   P+ K    R      ++ + + 
Sbjct: 74  GKNTMAGAMR--SVLSDMFREAIVEGHIVKNPVEATRIPEIKVARERL----QLETYNAT 127

Query: 186 WSEGSQPRLAF----EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241
            +        F    +  L +G R  D        + +N   +   KTG  I + L    
Sbjct: 128 RAAAEHMPAWFPLAMDLALVTGQRREDIVNMKFSDVFDNRLYVTQIKTGMKIAIPLSLTL 187

Query: 242 MK--------LLAMTPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNKS-- 285
                     +     + +  F I      N+    ++    +  F      +GVN S  
Sbjct: 188 RATGLRLGTVIDRCRLVSRTDFMISAGIRKNSPTGNIHPDGLTKTFVKARKASGVNFSNN 247

Query: 286 ---AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
               H +R   A                 G  + +  + Y    D  
Sbjct: 248 PPTFHEIR-SLAGRLYKNEHGEVFAQKLLGHTSENTTKLYLDERDNK 293


>gi|150017168|ref|YP_001309422.1| phage integrase family protein [Clostridium beijerinckii NCIMB
           8052]
 gi|149903633|gb|ABR34466.1| phage integrase family protein [Clostridium beijerinckii NCIMB
           8052]
          Length = 389

 Score =  105 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 44/308 (14%), Positives = 101/308 (32%), Gaps = 54/308 (17%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF-----DYRKITTKHIRSGVESRK 127
           WL    R S     +   +   +E  +   ++ S  +     + + +  +   +G+    
Sbjct: 73  WLFETIRVSDR---IKPTTFEKYEGLYRNYVKDSPLYSIKLSELKALQVQRYYNGLSDIG 129

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS----VERPKRKTEGIRPWTKEDMQQFK 183
            + +        ++  F +AV + Y++ NPCL     +   K+  + ++ ++ E+++   
Sbjct: 130 KSRNLIENLNKLLKQFFNYAVDEGYLSKNPCLGKKIVIPGEKKPRKEVQHFSDEEIEILV 189

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-------------- 229
           S   +     L     L +GLR  +      + +      +K  K+              
Sbjct: 190 SNLKDNRYRELIL-LSLGTGLRRGELLALTWEDIDLKNKIVKVNKSLAKVYIIAGDGSKE 248

Query: 230 -----------GTIITVELPDGFMKL---LAMTPIGK-----------ETFFINNDKQKM 264
                      G+I  V  PD    +   + +                +  F  +    +
Sbjct: 249 RKQIIQVPKTRGSIREVSFPDNLTSIFKDIRIKQRRDRLKCGESYEVSDHVFTTSSGSLI 308

Query: 265 NATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TY 322
           + T  S  ++    K  + +K  H +R   AT   +       +    G  ++D    TY
Sbjct: 309 DVTNLSHAWEHLLKKCKLPHKKFHALRHTFATKLFENEVALKTVSELLGHSSIDMTANTY 368

Query: 323 TKGADRIR 330
           T    + +
Sbjct: 369 THVIPKQK 376


>gi|116671017|ref|YP_831950.1| tyrosine recombinase XerC subunit [Arthrobacter sp. FB24]
 gi|116611126|gb|ABK03850.1| tyrosine recombinase XerC subunit [Arthrobacter sp. FB24]
          Length = 308

 Score =  105 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 43/280 (15%), Positives = 96/280 (34%), Gaps = 28/280 (10%)

Query: 85  GSLAVNSRISFESY---FDQIIRKSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFLT 138
            + + ++  ++ S       +    G  D   I    +R  + ++     + S+  +   
Sbjct: 25  RARSPHTVRAYLSDVHSLLTVAAADGATDLDGIELATLRRWLGAQSEARMSRSTLARRAA 84

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM--------QQFKSFWSEGS 190
           + R    WAVR+E +  +P L ++ PKR+        ++ +           +       
Sbjct: 85  TARSFTSWAVREELLGSDPALRLKAPKRERSLPGVLHQQQVLRVVDHLKAAAEDGGPLAL 144

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---------IITVELPDGF 241
           + R   E L  +G+R  +     V  L  +  +++    G             V + D  
Sbjct: 145 RDRAMVELLYATGVRVGELAGMDVDDLDPDRRTLRVVGKGNKERTVPYGLPAAVAVDDWL 204

Query: 242 MKLLAMTPIGK--ETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATIS 297
            +   +  +       F+    ++++  Q     K      G   +   H +R  +AT  
Sbjct: 205 RRGRPVLAVDGSGPALFLGARGRRVDQRQVRTVVKDVLDALGDTAATGPHALRHSAATHL 264

Query: 298 ADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNS 336
            D GA    +    G  ++   + YT    +R+R   + +
Sbjct: 265 LDGGADLRAVQEILGHSSLATTQIYTHVSVERLRQSYQQA 304


>gi|320352375|ref|YP_004193714.1| integrase family protein [Desulfobulbus propionicus DSM 2032]
 gi|320120877|gb|ADW16423.1| integrase family protein [Desulfobulbus propionicus DSM 2032]
          Length = 344

 Score =  105 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 60/334 (17%), Positives = 126/334 (37%), Gaps = 32/334 (9%)

Query: 9   PFVTKERTRHGKIIYYFRKGHG-RRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK 67
           P  TK ++  GK  +    G G +R R+ +         Y  ++          ++P+  
Sbjct: 5   PHPTKSKSEPGK-WWVIDIGRGNQRERITFNGSYEEAWRYERSIRQQPDHLVEGSAPK-- 61

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTK---HIRSGV 123
              +K +++ + +     + ++N+        D  II   G+F  +++T       ++ +
Sbjct: 62  ---IKDVVTLFLEWYRTEN-SINTVNDMRFCLDNHIIPWFGNFQPKQLTIALFNKFKADL 117

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINP-CLSVERP---KRKTEGIRPWTKEDM 179
             R   P +  + ++ +  L KWA    Y    P   ++ R    K   E ++P T+  +
Sbjct: 118 LERGLAPVTINKNMSYLSSLLKWASEHGYCQ--PLAFTIPRFSKKKTTAEPVQPLTRRQL 175

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------I 233
                      + RL F  +   GLR  ++    V+ +     +I+    G+       +
Sbjct: 176 DALYECLDP--EYRLLFLLMADHGLRKEEALNLQVEDIDEARKTIRVYGKGSKYRIVPFL 233

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRK 291
           +V   +   K+L+    G   F + N                 A KAG+++    H +R 
Sbjct: 234 SVRFEEELNKVLSERLEG---FLVVNPATGKPYYSIRKVLTRAAKKAGLSRQVYHHLLRH 290

Query: 292 FSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
              +++A+AG   + L    G   ++   + YT 
Sbjct: 291 TFGSLAAEAGMNPYALQRIMGHSNIETTNKIYTH 324


>gi|254454192|ref|ZP_05067629.1| tyrosine recombinase XerC [Octadecabacter antarcticus 238]
 gi|198268598|gb|EDY92868.1| tyrosine recombinase XerC [Octadecabacter antarcticus 238]
          Length = 301

 Score =  105 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 41/283 (14%), Positives = 90/283 (31%), Gaps = 24/283 (8%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF----DYRKITTKHIRSGVESRK 127
            WL  +   +    +     +     + + +    G+        +IT   +R+ + S +
Sbjct: 7   DWLDHQRALNGAAANTITAYQTDLLGFLNFMTTYHGEAQGLGPISRITVSDMRAWMASER 66

Query: 128 HTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE------D 178
               +A    + L++++  ++W   +E       LS   PK + +  RP   +      D
Sbjct: 67  GRGVAARSLARSLSAVKSFYRWLADREGFEPTAVLSTRSPKFQKKLPRPLAVDGARAMID 126

Query: 179 MQQFKSFWS-EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237
             + ++      ++       L   GLR S++       +          K G    V +
Sbjct: 127 TVELQAREPWIAARDVAVVTLLYGCGLRISEALGLTPTDVPLPATLRIIGKGGKERLVPV 186

Query: 238 PDGFMKLLAM-------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HG 288
                  +              +  F  +    +          +   + G+  +A  H 
Sbjct: 187 IPAARAAVNAYLDACPHQLTADQPIFRGSRGGPLYPKAIQNVMASSRMQLGLPATATPHA 246

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           +R   AT   +AG     +    G  ++   ++YT   D  RL
Sbjct: 247 MRHSFATHLLNAGGDLRSIQELLGHASLSTTQSYT-AVDTARL 288


>gi|297172260|gb|ADI23238.1| integrase [uncultured nuHF2 cluster bacterium HF0770_13K08]
          Length = 342

 Score =  105 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 52/287 (18%), Positives = 106/287 (36%), Gaps = 27/287 (9%)

Query: 74  LISEYRKSAHW-------GSLAVNSRISFESYFDQII-RKSGDFDYRKITTKHIRSGVES 125
           LI  ++++A +       G     S   + +  + +     G   ++ I    +      
Sbjct: 62  LIPSFKRNADFVAYFKKLGERKGQSSKVWRNVLNYLEVFTGGRVVFKNIDELWLEKWQRF 121

Query: 126 R--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
              K + ++A+ +    +     AVR   +  NPC  V+  KR+       T  +++Q  
Sbjct: 122 LLEKVSRNTAVGYYALTKAALNQAVRDRIIQDNPCKHVQNIKRQDTERIFLTFAEIKQLS 181

Query: 184 SFWSEG---SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
               +     +    F F  ++GL   +      + ++++       KT T   V L + 
Sbjct: 182 ETLPKDENSQEVARMFLFGCFTGLSLGNLETLTYKQIESDTVKFFRSKTKTWHHVPLNET 241

Query: 241 FMKLL----AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHG--VRKFSA 294
            + L+       P G+     N   ++ + T    W K    +AG+ K  H    R   A
Sbjct: 242 ALSLIGDTFDCDPNGR---IFNTPSRRYSQTLVGKWGK----QAGIKKHVHMHVSRHTFA 294

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGAD-RIRLGIKNSRRIS 340
           T++  +GA  + +    G K +D  + Y K  D + R  +    ++ 
Sbjct: 295 TLNLSSGADIYTVSKLIGHKKLDTTQIYAKVIDEKKRQAVDALPQLE 341


>gi|254452216|ref|ZP_05065653.1| integrase [Octadecabacter antarcticus 238]
 gi|198266622|gb|EDY90892.1| integrase [Octadecabacter antarcticus 238]
          Length = 389

 Score =  105 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 53/331 (16%), Positives = 110/331 (33%), Gaps = 22/331 (6%)

Query: 11  VTKERTRHGKIIYYFRKGHGRRIRL---PYPHESTFIPAYMSALT----GSTPKREYINS 63
           V       GK  Y +++  GR  RL    +P  +      ++A            +    
Sbjct: 36  VLAVTPAGGKSFYLYKRIDGRPERLLLGKFPDLTVENARKLAASAKGEIAMGENPQKAKR 95

Query: 64  PRKKPTTLKWLISEYR-KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122
             +   T   L +EY  K +     +       E   ++ ++         I    +   
Sbjct: 96  SIRDEMTFGALFTEYLEKHSKVHKRSWAYD---EREVNKFLKHWFKRKISSIEKPEVERL 152

Query: 123 VES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                +++    A + L  +R +F  A    +  +NP   +++ + K+   R    E++ 
Sbjct: 153 HAKVGKENGLYQANRLLERIRSIFSKATDWGWNGVNPATGIKKYREKSR-DRFLQPEELP 211

Query: 181 QFKSFWS--EGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVE 236
           +F    S       R  F   L +G R S++       +      + I   K      V 
Sbjct: 212 RFFEALSNEPNEVARDFFMISLLAGARKSNTLAMRWDEISFHGETWRIARTKNDDPQIVH 271

Query: 237 LPDGFMKLLAMTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFS 293
           L    M++L    +   +   F  +      A     W +    +AG+ +   H +R+  
Sbjct: 272 LSPQAMEILKERKLHSLSPWVFPGDGASGHLADPKKAWMR-ILKEAGIADLRIHDLRRTL 330

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324
            +  A  GA ++ +  + G ++      Y +
Sbjct: 331 GSWQAATGANSYIIGKSLGHRSQQSTAVYAR 361


>gi|310828727|ref|YP_003961084.1| phage integrase family site specific recombinase [Eubacterium
           limosum KIST612]
 gi|308740461|gb|ADO38121.1| phage integrase family site specific recombinase [Eubacterium
           limosum KIST612]
          Length = 386

 Score =  105 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 51/361 (14%), Positives = 108/361 (29%), Gaps = 53/361 (14%)

Query: 12  TKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
            K++ ++G   Y++R  H    R    +  T         + +      + + + +    
Sbjct: 6   YKKKVKNGNTYYFYRLNHKNLKRPRDLYGKTVQELVEKIDSLTYQLDRNVTTTKVR---F 62

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK-----SGDFDYRKITTKHIRSGVESR 126
              +  +    H  +    +   + S FD  I+          D   +  +   + +  +
Sbjct: 63  GDYMKNWLDKVHGINKKAGTIQGYSSLFDNYIKDSSLYNIQLTDLTALDVQDYLNSLLRK 122

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE--RPKRKTEGIR--PWTKEDMQQF 182
             + +        +    ++A  Q+ + ++   S++  +P    +G    P TKE+ ++F
Sbjct: 123 GKSFNVVSSVKKLIGPCIRYAYTQQKILVDFSRSIKIQKPSEIDDGTNVNPMTKEEQEEF 182

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------------- 229
                  +   L F   L +G R  +        +    F IK  KT             
Sbjct: 183 IKAIEGATYEPL-FLMALNTGARVGELLALTWDDVDFINFEIKITKTLEYQKDKETKKYI 241

Query: 230 ----------GTIITVELPDGFMKLLAMTPI--------------GKETFFINNDKQKMN 265
                     G   TV  P+     L                    +   F N     +N
Sbjct: 242 HIINSPKTKAGNR-TVPFPEFMAPYLKNLRAKELEKKMRLQNKYADRNLVFANRLGDFLN 300

Query: 266 ATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYT 323
            +   +   +   ++G+     H +R   AT   + G +   +    G   V      YT
Sbjct: 301 NSSVRVSMDSILKESGLPHFRFHDLRHTFATRLFELGESPRTIQTILGHTDVATTLNIYT 360

Query: 324 K 324
            
Sbjct: 361 H 361


>gi|291286542|ref|YP_003503358.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809]
 gi|290883702|gb|ADD67402.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809]
          Length = 399

 Score =  105 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 45/291 (15%), Positives = 104/291 (35%), Gaps = 27/291 (9%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
                  +  S    S+A ++  ++ +   ++      F   +I   HI+  + + + + 
Sbjct: 89  FDTYAELWLSSIE-SSVAYSTYKTYSTAVSKLSSYFSRFKLSEIKPSHIQQYISNSELSA 147

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS-FWSEG 189
            +   +L     +F+ AVR + ++ NPC  V++P+ +TE + P++ E++           
Sbjct: 148 KTIANYLGVFHSIFESAVRDDLLSKNPCKHVKKPRVQTEKVDPFSIEEVSMILDWMRQHH 207

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---NNIFSIKT---------QKTGTIITVEL 237
               + F    Y+G+R  ++       +    + I   +T          KT     +++
Sbjct: 208 PHMTIIFALGFYTGMRVGEAIALKWSDIDFKHHKIIVQRTITKNRIKESTKTADYRVIDI 267

Query: 238 PDGFMKLLAM----TPIGKETFFINNDKQKMNATQ--FSIWFKAKATKAGVNKSAHGV-- 289
                + L      T +  E   + +  +    TQ     +FK      G+      +  
Sbjct: 268 IPMLDEYLHFQKQYTFMKSEWVTVTSYGEPFTKTQNITEDYFKPCLKALGLRYRI--LNQ 325

Query: 290 -RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
            R   A +  DA    + +    G  ++     + K  +RI       + +
Sbjct: 326 MRHSFACMMLDAREEINWIKNMLGHSSLQM--LFRKYGNRINRNDGTRKGL 374


>gi|332036156|gb|EGI72631.1| tyrosine recombinase XerC [Pseudoalteromonas haloplanktis ANT/505]
          Length = 314

 Score =  105 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 40/268 (14%), Positives = 94/268 (35%), Gaps = 30/268 (11%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
           +++Y     + +L          YF ++      F  +    +     + S++ +  +  
Sbjct: 37  VNQYVSQLGFAAL----------YFSKLCDDW--FGVQGEHIRRYSMALRSKQLSGRTIS 84

Query: 135 QFLTSMRVLFKWAVRQEYVA----INPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WS 187
             L+ +R L+K+   +         NP + ++ PK      +    + M +         
Sbjct: 85  LKLSCIRSLYKFLKAKNIAEQSHYHNPAIGIKGPKFAKPLPKNLDVDQMARLLEIPDDEP 144

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVEL----PDGFM 242
              + +   E +  SGLR S+   A +Q +      I  +  G     + +     D   
Sbjct: 145 LAIRDKAMMELMYSSGLRISELVGANMQDISAANGEILVRGKGNKERLIPVGTKALDALK 204

Query: 243 KLLAMTP----IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATI 296
           K L + P      +   F+++ K +++  Q  +  +    K G++     H +R   A+ 
Sbjct: 205 KWLTIRPQFAKPDEIAVFLSSQKNRISIRQVRLRMQEWGIKQGISSQVHPHKLRHSFASH 264

Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324
             ++      +    G  ++   + YT 
Sbjct: 265 ILESSGDLRAVQELLGHSSLSATQVYTH 292


>gi|306822461|ref|ZP_07455839.1| tyrosine recombinase XerD [Bifidobacterium dentium ATCC 27679]
 gi|309801460|ref|ZP_07695587.1| tyrosine recombinase XerD [Bifidobacterium dentium JCVIHMP022]
 gi|304554006|gb|EFM41915.1| tyrosine recombinase XerD [Bifidobacterium dentium ATCC 27679]
 gi|308221975|gb|EFO78260.1| tyrosine recombinase XerD [Bifidobacterium dentium JCVIHMP022]
          Length = 318

 Score =  105 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 39/294 (13%), Positives = 96/294 (32%), Gaps = 43/294 (14%)

Query: 74  LISEYRKSAH-WGSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIR---SGVESR 126
           L+ ++         L+  +  ++ S   +    + + G  D   +TT+H+    + ++  
Sbjct: 7   LVRQFLAHIDVERGLSKATVCAYGSDLHKYVSWLHEQGIHDLDDVTTRHVEEYVASLDDS 66

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF---- 182
             +  S  + L S+    ++A+ +  V  +    V+ PK  +      + +++ +     
Sbjct: 67  GESARSKARRLASIHAFHRFALSEHVVHDDVASQVKAPKGASTLPDVLSVDEVMRLMDSI 126

Query: 183 ---------------KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227
                           +      + +   EF+  +G R S++C   +  +  +    +  
Sbjct: 127 PLSRHHDGKQGHGDAAADDPVMLRDKALLEFMYATGSRVSEACGVDLDDIDLDDKVARLM 186

Query: 228 KTGTIIT-VELPDGFMKLLAM--------------TPIGKETFFINNDKQKMNATQFSIW 272
             G+    V +     + L                        F+N   ++++       
Sbjct: 187 GKGSKQRLVPVGSFACEALRRYLRFGRPALQSKSKGAAEHRAVFLNKRGKRLSRQSVWEI 246

Query: 273 FKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            +    +A + K    H +R   AT     GA    +    G  +V   + YT 
Sbjct: 247 IRTAGERAHITKPLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTH 300


>gi|218442243|ref|YP_002380571.1| integrase [Cyanothece sp. PCC 7424]
 gi|218175384|gb|ACK74114.1| integrase family protein [Cyanothece sp. PCC 7424]
          Length = 289

 Score =  105 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 54/249 (21%), Positives = 99/249 (39%), Gaps = 13/249 (5%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSSAIQFLTSMRVLFKW 146
           + ++  S+     + +    +     +T   ++    S  H  PSS    + +++ L  +
Sbjct: 31  SPHTVDSYRRSARRFLDFV-NKPLHLVTLADLQLWRASLTHLAPSSQGTAMAAIKSLLSF 89

Query: 147 AVRQEYVAINPCLSVERPKRKTEGI-RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLR 205
             +   +  N  ++++ PK K     R   +E++    +   +  + R+    L   GLR
Sbjct: 90  GHQIGVLPTNVGIALKSPKVKDTLNERILNEEEVMTMIANEPD-ERNRVLLRLLYAGGLR 148

Query: 206 CSDSCRAGVQHL--QNNIFSIKT-QKTGTIITVELPDGF---MKLLAMTPIGKETFFINN 259
            S+ C    + L  +N    +    K G   TV LP G    +  +     G +  F + 
Sbjct: 149 VSELCALKWKDLKSRNQSGQVTVFGKGGKTRTVLLPSGVWQELCQIRGKSRGADPVFPSR 208

Query: 260 -DKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTV 316
                ++ TQ     KA A++AG+    S H +R   A+ S D GA  H + AT G  +V
Sbjct: 209 MGGGHLDRTQVYRIVKAAASRAGIEGNVSPHWLRHAHASHSLDRGAPLHLVQATLGHSSV 268

Query: 317 DQAETYTKG 325
              E Y   
Sbjct: 269 ATTERYLHA 277


>gi|171742548|ref|ZP_02918355.1| hypothetical protein BIFDEN_01661 [Bifidobacterium dentium ATCC
           27678]
 gi|283456366|ref|YP_003360930.1| Integrase/recombinase (XerD/RipX family) [Bifidobacterium dentium
           Bd1]
 gi|171278162|gb|EDT45823.1| hypothetical protein BIFDEN_01661 [Bifidobacterium dentium ATCC
           27678]
 gi|283103000|gb|ADB10106.1| Integrase/recombinase (XerD/RipX family) [Bifidobacterium dentium
           Bd1]
          Length = 318

 Score =  105 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 39/294 (13%), Positives = 96/294 (32%), Gaps = 43/294 (14%)

Query: 74  LISEYRKSAH-WGSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIR---SGVESR 126
           L+ ++         L+  +  ++ S   +    + + G  D   +TT+H+    + ++  
Sbjct: 7   LVRQFLAHIDVERGLSKATVCAYGSDLHKYVSWLHEQGIHDLDDVTTRHVEEYVASLDDS 66

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF---- 182
             +  S  + L S+    ++A+ +  V  +    V+ PK  +      + +++ +     
Sbjct: 67  GESARSKARRLASIHAFHRFALSEHVVHDDVAAQVKAPKGASTLPDVLSVDEVMRLMDSI 126

Query: 183 ---------------KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227
                           +      + +   EF+  +G R S++C   +  +  +    +  
Sbjct: 127 PLSRHHDGKQGHGDAAADDPVMLRDKALLEFMYATGSRVSEACGVDLDDIDLDDKVARLM 186

Query: 228 KTGTIIT-VELPDGFMKLLAM--------------TPIGKETFFINNDKQKMNATQFSIW 272
             G+    V +     + L                        F+N   ++++       
Sbjct: 187 GKGSKQRLVPVGSFACEALRRYLRFGRPVLQSKSKGAAEHRAVFLNKRGKRLSRQSVWEI 246

Query: 273 FKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            +    +A + K    H +R   AT     GA    +    G  +V   + YT 
Sbjct: 247 IRTAGERAHITKPLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTH 300


>gi|291535839|emb|CBL08951.1| Site-specific recombinase XerD [Roseburia intestinalis M50/1]
          Length = 312

 Score =  105 bits (263), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 39/276 (14%), Positives = 94/276 (34%), Gaps = 28/276 (10%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           I++Y     +   L   +  ++++  +Q I   G+ +  K         +    +   + 
Sbjct: 7   INKYLNYCKFQKELKDKTIKAYKADLEQFITVIGENNPDKEVLNAYLVYLHRM-YKQKTV 65

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQQFKSFW------ 186
            + + S++ LF +   +E + INP   V+ + + +    +   ++ ++Q  +        
Sbjct: 66  KRKIASVKALFHYLEEEELIEINPFHKVKTKFREEVILPKIIPRDIIEQLLNHLYKERSI 125

Query: 187 --------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVEL 237
                       +     E L  +GLR S+ C    +++      +    K G    +++
Sbjct: 126 KEYSEWRKKIILRDIAVVETLFSTGLRISELCHLQNKYVDLKNGVLCIQGKGGKERYLQI 185

Query: 238 --------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKA--TKAGVNKSAH 287
                    + + K        +  FF+N     ++           A   +A +N + H
Sbjct: 186 GNNDVLSILNAYKKSFEDEIKKQGYFFVNRYGNALSEQSARSMIHKYAGEIQADINITPH 245

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
             R   AT   +       +    G  ++   + YT
Sbjct: 246 MFRHSFATYLMEEDVNIRYIQKMLGHASITTTQIYT 281


>gi|254498340|ref|ZP_05111078.1| prophage dlp12 integrase [Legionella drancourtii LLAP12]
 gi|254352434|gb|EET11231.1| prophage dlp12 integrase [Legionella drancourtii LLAP12]
          Length = 331

 Score =  105 bits (263), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 51/310 (16%), Positives = 100/310 (32%), Gaps = 14/310 (4%)

Query: 22  IYYFRKGH-GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRK 80
           I++    H G+R+R     E      Y  A        E          T    +  + +
Sbjct: 9   IWWVDIFHQGKRVRKSTGTEVKQDAEYFHAQLKHELWTEKQIKSIPNK-TWMDAVRRWLE 67

Query: 81  SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSM 140
            +     ++ +     ++ DQ  R     D  +   + I    E    +P++  + L  +
Sbjct: 68  ESA-HKRSLETDKIHLAWLDQHFRTKKLTDIDRDLIESIAKKKEQSNVSPTTVNRVLELV 126

Query: 141 RVLFKWA-VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199
           R +   A     ++   P   +   K +   IR  T+ +  Q         +   +F  +
Sbjct: 127 RAILNRAQKEWGWLETLPV--IRMRKVENRRIRWLTQNEASQLLKELPSHLKDMASFTLV 184

Query: 200 LYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF 255
             +GLR S+  +     +       +      K+   I V L    + +L        T+
Sbjct: 185 --TGLRESNVTQLKWSEIHLEKKHALIHADESKSKRPIPVPLSQQAIAILKDQIGKNPTY 242

Query: 256 FINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWK 314
                 Q +     +  ++    +AG+ +   H +R   A+     G   HEL    GW 
Sbjct: 243 VFTYQGQPVTRCN-NHAWRKALERAGISDFRWHDLRHTWASWHVQNGTPLHELQQLGGWS 301

Query: 315 TVDQAETYTK 324
           T +    Y  
Sbjct: 302 TYEMVLRYAH 311


>gi|85706394|ref|ZP_01037488.1| tyrosine recombinase XerC [Roseovarius sp. 217]
 gi|85669167|gb|EAQ24034.1| tyrosine recombinase XerC [Roseovarius sp. 217]
          Length = 306

 Score =  105 bits (263), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 47/298 (15%), Positives = 94/298 (31%), Gaps = 24/298 (8%)

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF----DYRKITTKH 118
           SP  +     WL ++        +           +   + +  G+        +ITT  
Sbjct: 3   SPAARDALSAWLAAQKALKGAAANTIDAYARDVGDFLRFMTQHHGETQGLGALSRITTSD 62

Query: 119 IRSGVESRKHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
           +R+ +   +     P S  + L++++  ++W   +E       LS   PK + +  RP +
Sbjct: 63  MRAWMAHTRGGDVGPRSLARKLSAVKSFYRWLSEREGFEPTAVLSTRSPKFQRKLPRPLS 122

Query: 176 KEDMQQFKSFWS-------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
            E   +               ++ +     L   GLR S++       L          K
Sbjct: 123 PEAASEMIDTLEVQSLTPWIAARDQAVVTLLYGCGLRISEALGLTGADLPIGTVLRILGK 182

Query: 229 TGTIITVELPDGFMKLLAMTPI-------GKETFFINNDKQKMNATQFSIWFKAKATKAG 281
            G    V + +     +                 F+      ++        +    + G
Sbjct: 183 GGKERLVPVIEPARAAVTQYARLCPYDIPRNGPLFLGARGGALSPRLIQKVMEQTRAQLG 242

Query: 282 VNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
           +  +A  H +R   AT   +AG     +    G  ++   + YT G D  RL    +R
Sbjct: 243 LPATATPHAMRHSFATHLLNAGGDLRAIQELLGHASLSTTQAYT-GVDTARLMEVYAR 299


>gi|327440195|dbj|BAK16560.1| integrase [Solibacillus silvestris StLB046]
          Length = 313

 Score =  105 bits (263), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 47/281 (16%), Positives = 88/281 (31%), Gaps = 40/281 (14%)

Query: 88  AVNSRISFE-------SYFDQIIRKSGDFDYRKITT-------------KHIRSGVE--- 124
           +  +R  +E        +   I           I               + +   +E   
Sbjct: 21  SQRTRKEYEYDLILFMRFLKAIEEDIPLDRLHTIDISTITIDQIKEVSLEDLYLFMEYCE 80

Query: 125 -SRKHTPSSAIQFLTSMRVLFKWAV-RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
             R ++ S+  + + +++  FK+   ++  +  NP   +E PK            + + F
Sbjct: 81  VQRGNSSSARARKVATLKSFFKYLKGKRRLIDENPAEHLETPKIGRRQPVYLNYNEAKDF 140

Query: 183 KSF---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239
                  S  ++      F L  G+R S+ C   +  +   + ++   K      V L D
Sbjct: 141 IGAVQTQSYSARDECMMVFFLNLGIRVSELCSLNIDSINGRMLTVI-GKGNKERHVYLND 199

Query: 240 GFMKLLAM--------TPIGKETFFINNDKQKMNATQFSIWFKAK---ATKAGVNKSAHG 288
             M  L             GKE  FI+    +      +   K     +       + H 
Sbjct: 200 ACMNALDKYLQERHAYKGDGKEPLFISQKGTRFARQSIARIVKVINANSHSPKEKLTPHK 259

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           +R  SAT+   +GA    L    G  +V   + YT   D  
Sbjct: 260 LRHTSATMMYKSGADIRTLQHILGHSSVATTQIYTHIEDEQ 300


>gi|257453686|ref|ZP_05618973.1| tyrosine recombinase XerC [Enhydrobacter aerosaccus SK60]
 gi|257448920|gb|EEV23876.1| tyrosine recombinase XerC [Enhydrobacter aerosaccus SK60]
          Length = 345

 Score =  105 bits (263), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 44/280 (15%), Positives = 95/280 (33%), Gaps = 28/280 (10%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK--SGDFDYRKITTKHIRSGVESR--- 126
           + L++ +         +  +  S+       +        +   IT + +   +  R   
Sbjct: 48  QALVNRWLAELSNKRYSAATIKSYRQALQPFLAYCYEQHTELCHITRQQLSDFLIRRLDV 107

Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM------ 179
            K + SS+   LT +R L+KW + Q+ + +NP  ++ R KR    +      D+      
Sbjct: 108 DKISKSSSQYELTVLRQLYKWLIVQQLMTLNPTTTI-RLKRAPRPLPTLLDIDVLSQLLD 166

Query: 180 -QQFKSFWSEGS--QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITV 235
               +         + +   E L  SGLR  +     +  +  +   ++   K G    V
Sbjct: 167 QAAPEDSHEARLWIRDKAMLELLYGSGLRVGELVGLNMSDIDKSQRLLRVLGKGGKTRIV 226

Query: 236 ELPD-GFMKLLAMTPI-------GKETFFINND-KQKMNATQFSIWFKAKATKAGVNKS- 285
            + +  +  L+   P             F++     +++     +  K +A +AGV +  
Sbjct: 227 PIGEKAWQALINYLPHRSLWVEEQDPAVFVSERYGTRISTRTVQLRIKLQAKRAGVAQDL 286

Query: 286 -AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             H +R   A+           +    G   +   + YT 
Sbjct: 287 YPHLLRHCFASHILSDSGDLRGVQELLGHSDISTTQIYTH 326


>gi|257413888|ref|ZP_04744580.2| putative tyrosine recombinase XerD [Roseburia intestinalis L1-82]
 gi|257201913|gb|EEV00198.1| putative tyrosine recombinase XerD [Roseburia intestinalis L1-82]
          Length = 334

 Score =  105 bits (263), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 39/276 (14%), Positives = 94/276 (34%), Gaps = 28/276 (10%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           I++Y     +   L   +  ++++  +Q I   G+ +  K         +    +   + 
Sbjct: 29  INKYLNYCKFQKELKDKTIKAYKADLEQFITVIGENNPDKEVLNAYLVYLHRM-YKQKTV 87

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQQFKSFW------ 186
            + + S++ LF +   +E + INP   V+ + + +    +   ++ ++Q  +        
Sbjct: 88  KRKIASVKALFHYLEEEELIEINPFHKVKTKFREEVILPKIIPRDIIEQLLNHLYKERSI 147

Query: 187 --------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVEL 237
                       +     E L  +GLR S+ C    +++      +    K G    +++
Sbjct: 148 KEYSEWRKKIILRDIAVVETLFSTGLRISELCHLQNKYVDLKNGVLCIQGKGGKERYLQI 207

Query: 238 --------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKA--TKAGVNKSAH 287
                    + + K        +  FF+N     ++           A   +A +N + H
Sbjct: 208 GNNDVLSILNAYKKSFEDEIKKQGYFFVNRYGNALSEQSARSMIHKYAGEIQADINITPH 267

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
             R   AT   +       +    G  ++   + YT
Sbjct: 268 MFRHSFATYLMEEDVNIRYIQKMLGHASITTTQIYT 303


>gi|163859107|ref|YP_001633405.1| site-specific tyrosine recombinase XerC [Bordetella petrii DSM
           12804]
 gi|163262835|emb|CAP45138.1| putative integrase/recombinase [Bordetella petrii]
          Length = 326

 Score =  105 bits (263), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 45/304 (14%), Positives = 94/304 (30%), Gaps = 42/304 (13%)

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI--IRKSGDFDYRKITTK 117
               P   P  L   +   R    +   + ++  ++     Q+  + ++      ++   
Sbjct: 5   EPAPPDTLPQPLDAWLQHLRAHRRY---SPHTLDAYRRDLRQLAVLAQAAGLPLEQLANG 61

Query: 118 HIR---SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
           HIR   + + ++   P S  + L + R  ++W      +A NP   V  PK      +  
Sbjct: 62  HIRQFVARLHAQGLGPRSLARTLAAWRGFYQWWAPGAGLAGNPVAGVRAPKAARGLPKAL 121

Query: 175 TKEDMQQFKSFW-------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--------- 218
           + E  Q               G + R  FE L  SGLR S+     +++ +         
Sbjct: 122 SVEQAQALLDHATSRLATDPAGLRDRAMFELLYSSGLRLSELVGLDIRYERSADYESRSW 181

Query: 219 ---NNIFSIKTQKTGTIITVEL----PDGFMKLLAMTP---------IGKETFFINNDKQ 262
              ++   +   K G    V +         + +   P               F+    +
Sbjct: 182 LNLDDAEVVVLGKGGKRRAVPVGQAALTALRRWIDARPQLAAAAASAGDAAALFVGARGR 241

Query: 263 KMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
           ++      +     A  AG+      H +R   A+    +      +    G   +   +
Sbjct: 242 RIAPRVVQLQLARLAQAAGLPAHVHPHVLRHSFASHVLQSAQDLRAVQEMLGHANISTTQ 301

Query: 321 TYTK 324
            YT+
Sbjct: 302 IYTR 305


>gi|152991432|ref|YP_001357154.1| phage integrase family site specific recombinase [Nitratiruptor sp.
           SB155-2]
 gi|151423293|dbj|BAF70797.1| site-specific recombinase, phage integrase family [Nitratiruptor
           sp. SB155-2]
          Length = 365

 Score =  105 bits (263), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 41/296 (13%), Positives = 93/296 (31%), Gaps = 21/296 (7%)

Query: 57  KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT 116
           +        +K   L      Y K     + +++   +   Y + I    G      IT 
Sbjct: 67  EDPLRAKKLRKSKVLDEAFELYVKDRELHNKSLHDEKA--RYINHIQPTFGSTPIAAITP 124

Query: 117 KHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIR 172
           + I+   + +    ++  +    +  +  +    + +  Y   NP   V+R K      R
Sbjct: 125 EAIQKLQKKKINEGYSYKTVNHIINLLSTIINVGIEKGLYQGSNPAKKVKRLKVDNARER 184

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTG 230
             + ++++       +     L     L +G R         + +   +    +K  K  
Sbjct: 185 FLSVDEVKLLLDTVKDNPTLYLFCNLSLSTGGRLETILAIQKKDIDLESGTIKLKDFKND 244

Query: 231 TIITVELPDGFMKLLA--MTPIGKETFFINNDKQKMNATQFSIWFKAKATKA---GV--- 282
           +  T  + D    LL   +  +    + ++   + + + Q  +  K    +    G+   
Sbjct: 245 STYTGFINDTLHSLLKDLLPQLKANDYILSKSSKPLTSRQIQVPLKPILDRLFNQGLQPN 304

Query: 283 ----NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGI 333
                   H +R   A+  A  G   + +      K ++    Y K A D  R  +
Sbjct: 305 DRKNRVVIHTLRHTFASHLAINGTPIYTIQRLMNHKDINMTLRYAKLAPDSGREAV 360


>gi|326571339|gb|EGE21356.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis BC8]
          Length = 331

 Score =  105 bits (263), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 46/297 (15%), Positives = 105/297 (35%), Gaps = 30/297 (10%)

Query: 58  REYINSPRKKPTTLKW-LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY----- 111
               +S +  P++  W  +S +       + + ++  ++++   Q        +Y     
Sbjct: 9   APTHSSHQSDPSSPAWGYLSSWCDELRLQNYSKHTITTYQTALIQFFNFLESDNYLGGDP 68

Query: 112 ----RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167
               R+  T+   + +E  K  P SA   L+++R+ +++ ++Q  +A+NP    +     
Sbjct: 69  LACRRQDLTRFFSTRLEEEKIKPISAKLSLSAIRIFYQFLIKQGVIAVNPTTGYKIKSAP 128

Query: 168 TEGIRPWTKEDMQQFKS-FWSEGS-------QPRLAFEFLLYSGLRCSDS--CRAGVQHL 217
            +      +  ++Q       E +       + +  FE +  SGLR S+      G  + 
Sbjct: 129 RKLPTVADELLIKQLLDQKTPEDTAKAYLWIRDKAMFELMYSSGLRLSELAGLNMGDVNF 188

Query: 218 QNNIFSI-------KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINND-KQKMNATQF 269
              I  +       +    G    + L D             +  FI+     +++    
Sbjct: 189 DTGIVRVLGKGNKTRQVPVGKKAMIALQDYLPHRNLWQKKNCKALFISERHGTRLSTRAI 248

Query: 270 SIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            +  K  AT AG+  +   H +R   A+    +      +    G + +   + YT 
Sbjct: 249 QLRLKVCATMAGIELNMYPHLLRHCFASHVLSSSGDLRAIQEMLGHQNISTTQIYTH 305


>gi|301168983|emb|CBW28580.1| DLP12 prophage; predicted integrase [Haemophilus influenzae 10810]
          Length = 347

 Score =  105 bits (263), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 44/252 (17%), Positives = 84/252 (33%), Gaps = 15/252 (5%)

Query: 83  HWGSLAVNSRISFESY--FDQIIRKSGDFDYRKITT---KHIRSGVESRKHTPSSAIQFL 137
            W       +           + +  GD    +I     K I+S          +    L
Sbjct: 70  QWLEEKPKRKQDRNMIYGLVWLDKYLGDKKLSEIDRNLIKFIQSEKAREGVKARTINAVL 129

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE 197
             +RV+ + AV  E++   P   ++        IR  ++ +  +      E  +P + F 
Sbjct: 130 QQIRVVLRAAVEWEWIDKCPA--IKFLPEPKRRIRWLSEYEEIRLMQELPEHLKPIVQFA 187

Query: 198 FLLYSGLRCSDSCRAGVQHLQ----NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE 253
            L  +GLR S+  +     +         S +  KTG  I + L D  ++++       +
Sbjct: 188 IL--TGLRMSNITQLKWSQIDLPKKMAWISSEQSKTGNGIGIPLNDKAIEVIVAQFGKHK 245

Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYG 312
                 +   +     +  F+    +AG+ +   H +R   AT    +G   + L    G
Sbjct: 246 ENVFTYNGNAVKIAN-TRAFRESLKRAGIKDFRFHDLRHTWATRHIMSGTPLYVLQELGG 304

Query: 313 WKTVDQAETYTK 324
           W   D    Y  
Sbjct: 305 WTKTDTVRKYAH 316


>gi|227529436|ref|ZP_03959485.1| phage integrase/recombinase [Lactobacillus vaginalis ATCC 49540]
 gi|227350646|gb|EEJ40937.1| phage integrase/recombinase [Lactobacillus vaginalis ATCC 49540]
          Length = 322

 Score =  105 bits (263), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 40/262 (15%), Positives = 89/262 (33%), Gaps = 14/262 (5%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129
            I++Y  +      +  +   ++     +    G    +KITT+ +R  +    +SR  +
Sbjct: 47  YIADYLAAKQVEGCSEKTINYYQVTLKMMFSYLG-KHVQKITTEDLRDYLGNYQQSRNSS 105

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
             +           F W   ++ +  +P   + + K   +    ++ ED+++ +   +  
Sbjct: 106 RVTIDNIRRIFSSFFSWLEDEDVIIKSPVRRIHKVKSSAKVKDTYSDEDLERLRDHCNS- 164

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG-----FMKL 244
            +     + L  +G+R  +        +  +         G    +   D          
Sbjct: 165 ERDVAMIDILASTGMRIGELVNLNQNDINFDERECVVLGKGNKQRIVYFDARSKIHLQNY 224

Query: 245 LAMTPIGKETFFIN--NDKQKMNATQFSIWFKAKATKAGVNKS-AHGVRKFSATISADAG 301
           LA         F++     Q+M+        K+   KAG+ K   H  R+  AT + D G
Sbjct: 225 LAKRKDANSALFVSLHAPHQRMSINGIENRLKSLGKKAGIAKVYPHKFRRTLATNAIDKG 284

Query: 302 ATAHELMATYGWKTVDQAETYT 323
               ++    G + +D    Y 
Sbjct: 285 MPIEQVQKLLGHERIDTTLHYA 306


>gi|166031050|ref|ZP_02233879.1| hypothetical protein DORFOR_00731 [Dorea formicigenerans ATCC
           27755]
 gi|166029317|gb|EDR48074.1| hypothetical protein DORFOR_00731 [Dorea formicigenerans ATCC
           27755]
          Length = 329

 Score =  105 bits (263), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 47/281 (16%), Positives = 100/281 (35%), Gaps = 19/281 (6%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
           + +Y  S      +V++   +     +++    +     IT   I S + + K+  +   
Sbjct: 54  LEDYLMSKALEGKSVDTVNRYRYELTRLLSYI-NKAVADITDGDISSYLRAYKNIRAVKN 112

Query: 135 QFLTSMRVLFK----WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
             L  +R ++     W   ++ V  NP + VE  K +    RP+T  + +Q     +   
Sbjct: 113 STLKGVRAVYSSFFVWLRDRDRVRRNPMVLVESIKVEKRIKRPFTDAEREQLLRSCAT-I 171

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQ---NNIFSIKTQKTGTIITVELPDG----FMK 243
           + +   EFL  + +R S+        ++    ++      K G   TV L +       +
Sbjct: 172 RDKAMMEFLYSTAVRVSELASLNRDDIRWSSKDLIVY--GKGGKERTVYLNERTNMYLQE 229

Query: 244 LLAMTPIGKETFF--INNDKQKMNATQFSIWFKAKATKAGVNKS-AHGVRKFSATISADA 300
            L          F  + +   +++        +    +AGV K+  H  R  S T + + 
Sbjct: 230 YLQSRTDNNPALFVGLKSPHNRLSKAGIEDMIRRTGERAGVEKAHPHRFRGTSITNAINR 289

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
           G    E     G    +    Y    D+  +   + + +S+
Sbjct: 290 GMPLQEASIMAGHAKTETTMLYC-SVDQESVKYHHKKYLSA 329


>gi|116623840|ref|YP_825996.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116227002|gb|ABJ85711.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 297

 Score =  105 bits (263), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 45/279 (16%), Positives = 92/279 (32%), Gaps = 23/279 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG----VESRKHTPSSAIQFLTSM 140
            + A ++   +                 K+  +H+R         +     +  Q++ ++
Sbjct: 15  RNYAQSTVKGYLRIVQDFAEHF-HQQPDKLGPEHLRQYQAHLFRDKHLNAGTVQQYVAAL 73

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200
           R  F   +++ Y+  +    +  PKR  +     + +++       S           L 
Sbjct: 74  RFFFNKTLKRHYLLDD----IPMPKRHRKLPEILSPDEVALLIGSASNLLHQ-TMLMTLY 128

Query: 201 YSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFMKLLA---MTPIGKETF 255
            +G+R ++ CR     + +      I+  K G    V L    ++ L         K   
Sbjct: 129 STGVRRAELCRLKSADIDSQRMMVHIRQGKGGHDRDVPLSPRLLETLRVYWRWMKPKTYL 188

Query: 256 F---INNDKQ--KMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELM 308
           F   +NN +    +         +  A +AG+ K  S H +R   A+   +AG     + 
Sbjct: 189 FPGTVNNWRADVPITTKVPWEACRQAAQRAGITKHVSPHTLRHCFASHLLEAGTDLRTIQ 248

Query: 309 ATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
              G   ++    Y     R  L    +   + VV S D
Sbjct: 249 MLLGHAKLEHTAMYLH-LSRKHLTAVANPLDAIVVSSPD 286


>gi|197104212|ref|YP_002129589.1| probable integrase/recombinase DNA recombination protein
           [Phenylobacterium zucineum HLK1]
 gi|196477632|gb|ACG77160.1| probable integrase/recombinase DNA recombination protein
           [Phenylobacterium zucineum HLK1]
          Length = 305

 Score =  105 bits (263), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 47/261 (18%), Positives = 92/261 (35%), Gaps = 31/261 (11%)

Query: 110 DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
           D      +   + + +R  + ++A +   ++R  +++ + + +   +P   VE PK+   
Sbjct: 50  DATAEDVEAYFADLGARGLSAATAARRRAAVRQFYRFVLGEGWRGDDPSRRVEAPKKGRS 109

Query: 170 GIRPWTKEDMQQFKSFW------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-QNNIF 222
             +  ++E+M +  +        S   +     E    SGLR S+     +  L ++  +
Sbjct: 110 LPKVLSREEMDRLIAAAGARDGASHALRLACMVELAYASGLRISELTGLTLAALARDPAY 169

Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINND------------KQKMNATQFS 270
            I   K G      L +     +      +  F    D              ++   +F+
Sbjct: 170 LIVKGKGGKERLAPLNEPARAAVKAYLEVRPAFLPKGDTANPWLFPSRGKGGRLTPRRFA 229

Query: 271 IWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
                 A  AG++    S H +R   AT   + GA    +    G   +   + YT  A 
Sbjct: 230 QLLDEAAADAGIDPGRVSPHVLRHAFATHLLEGGADLRVVQKLLGHADIATTQIYTHVA- 288

Query: 328 RIRLGIKNSRRISSVVDSDDP 348
                   S R+S VV S  P
Sbjct: 289 --------SDRLSEVVRSKHP 301


>gi|227833388|ref|YP_002835095.1| integrase/recombinase [Corynebacterium aurimucosum ATCC 700975]
 gi|227454404|gb|ACP33157.1| integrase/recombinase [Corynebacterium aurimucosum ATCC 700975]
          Length = 303

 Score =  105 bits (263), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 45/292 (15%), Positives = 95/292 (32%), Gaps = 22/292 (7%)

Query: 59  EYINSPRKKPTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK 117
           E  +S R     L+  I ++ +        +  +   + S    +  +  +  +   T  
Sbjct: 4   ESGSSERHVGGQLEEAIEDFAEYQRIVRGRSEATVRGYCSDLRLLAPEVPE--FAAFTLN 61

Query: 118 HIRSGVE---SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
            +R  +    +   + S+  +   ++R    WA R+ Y+  +    +  PK         
Sbjct: 62  SLREWLAHAVAEGKSRSTLARRTAAVRAFSTWAAREGYLESDVAQRLATPKVGKHLPTVM 121

Query: 175 TKEDM-----QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQK 228
           +             +      +     EFL  +G+R ++     V  +  +  + + T K
Sbjct: 122 SPTAAGELMGNAVSTDEVHFLRDSAMLEFLYATGVRVAELVGLDVGDIDLSRRTARVTGK 181

Query: 229 TGTIITVELPDGFMKLLAM--------TPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280
                 V   D     L               E  F+     +++A Q     +  A   
Sbjct: 182 GNKQRVVPFGDAAHDALCAWLKTGRPELAGETEAVFVGTRGGRIDARQVRRVVERAAQVT 241

Query: 281 GVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330
           G    + HG+R  +AT   + GA    +    G  ++   + YT   A R++
Sbjct: 242 GAPGLTPHGLRHSAATHLLEGGADLRIVQELLGHSSLQTTQVYTHVSAQRLK 293


>gi|119491191|ref|ZP_01623288.1| recombinase [Lyngbya sp. PCC 8106]
 gi|119453532|gb|EAW34693.1| recombinase [Lyngbya sp. PCC 8106]
          Length = 345

 Score =  105 bits (263), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 45/291 (15%), Positives = 102/291 (35%), Gaps = 43/291 (14%)

Query: 82  AHWGSLAVN-------SRISFESYFDQII-----RKSGDFDYRKITTKHIRSGV-ESRKH 128
           A +  L V        + I+++    Q +     R+    +  K   K  R  + + +  
Sbjct: 26  ADFLDLDVGAGDAATDTLITYKRQLIQFLDWCDQRQLHPAEINKNDIKKYRRWMIDKKGF 85

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT---KEDMQQFKSF 185
            P++    L+ +R  ++ A+ +  + +NP   V+ PK K +     T     +++Q  + 
Sbjct: 86  KPATIALKLSVVRRFYQAAMEKGLLTVNPATGVKAPKEKHDPAEKITYLEASEVEQLFAT 145

Query: 186 WSEG-----SQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELP 238
             +      ++ +     L   G R  +  RA +  +  Q   + I+ +    I  V L 
Sbjct: 146 IPDDGSLKSARDKALLAILTLEGPRTVELHRANICDIVRQGKNWGIRVEGKRNIRIVPLT 205

Query: 239 DGFMKLLAMTPIGKET----------FFI----NNDKQKMNATQFSIWFKAKATKAGVNK 284
               +LL +    +E            F+        ++++     +       +A + +
Sbjct: 206 PEIAQLLRVYLERREAAEGQLKPSSPLFVAVGNRAGGKRISRRGIRLIVDGYLKEAQLKQ 265

Query: 285 SA------HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           +       H +R  + T++  +GA   ++    G         Y    DR 
Sbjct: 266 TPGRTLSTHSLRHTAGTLALRSGAELRQVQDLLGHADPRTTCIYAHVGDRW 316


>gi|283851773|ref|ZP_06369051.1| integrase family protein [Desulfovibrio sp. FW1012B]
 gi|283572893|gb|EFC20875.1| integrase family protein [Desulfovibrio sp. FW1012B]
          Length = 395

 Score =  105 bits (263), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 43/281 (15%), Positives = 93/281 (33%), Gaps = 18/281 (6%)

Query: 70  TLKWLISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRK---ITTKHIRSGVES 125
           TL  L +EY        +L+         +   I    G+ +  +   +    +RS +  
Sbjct: 93  TLAKLWTEYASHKPENHALS----TDRSRFETYIKPAFGEKEPAEVLTLDLDRMRSRLLK 148

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAI-NPCLS-VERPKRKTEGIRPWTKEDMQQFK 183
           +  +P +    L   + L ++ V++      +P    +  P+   E       +++ +  
Sbjct: 149 QGKSPQTVKHVLALFKRLVRFGVKKGLCDSPDPRKQTISMPRVDNETTEDLDADELARLV 208

Query: 184 SFWSEGSQPRLA--FEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPD 239
               +    + A      +++G+R  +  +   + +        I+  K G    + L D
Sbjct: 209 QAIEDEPNIQAANFMRLAMFTGMRRGELFKLEWRDVDFERGFIHIRHPKGGKSQKIPLND 268

Query: 240 GFMKLLAMTPI--GKETFFINNDKQKM-NATQFSIWFKAKATKAGVNKSAHGVRKFSATI 296
               +LA  P        F     ++       S   KA+A+     +  HG+R   A+ 
Sbjct: 269 AARAVLASHPHVENSPYVFPGQGGKQRVTIQVASNRIKARASLPADFRPLHGLRHLFAST 328

Query: 297 SADAG-ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
            A +G      L      K+ +  + Y+   D         
Sbjct: 329 LASSGQVDLLTLQKLLTHKSPNMTKRYSHLRDDALKQASGV 369


>gi|332041695|gb|EGI78047.1| phage integrase [Hylemonella gracilis ATCC 19624]
          Length = 369

 Score =  105 bits (263), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 49/305 (16%), Positives = 89/305 (29%), Gaps = 53/305 (17%)

Query: 72  KWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKIT--TKHIRSGVESR-- 126
             L+ +Y         LA  +   +    D++   +       +   + H+R  +     
Sbjct: 35  DALVLQYLAHVRVEKRLAQRTVELYTLDLDKLGEFARQAGVSLLQVHSAHVRRWIAQMHA 94

Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
              +       L+  R  + W  RQ Y+  NP   V  PK      +  + +D  +  S+
Sbjct: 95  GGRSGRGIALILSGWRGFYAWLGRQGYITSNPVQDVRAPKAAKPLPKALSVDDAVRLASY 154

Query: 186 --------WSEG----------SQPRLAFEFLLYSGLRCSDSCRA-------------GV 214
                     +G          ++     E L  SGLR S+                 G 
Sbjct: 155 RGGESGADTPQGDALDDDPWFSARDAAMTELLYSSGLRVSELTGLDVAPSEAARKAGRGW 214

Query: 215 QHLQNNIFSIKTQKTGTIITVELPDGFMKLL-------------AMTPIGKETFFINNDK 261
             LQ     +   K G    V +     K L             A    G+   FI  + 
Sbjct: 215 LDLQAGEVEV-QGKGGKRRAVPVGTAARKALLQWLEVRGQGVSAAALQDGQTALFIGRNG 273

Query: 262 QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
            ++         K ++  AG+      H +R   A+    +      +    G   +   
Sbjct: 274 TRLTPQSIWQRLKRRSLLAGLATPVHPHMLRHSFASHVLQSSGDLRAVQELLGHANIGTT 333

Query: 320 ETYTK 324
           + YT+
Sbjct: 334 QVYTR 338


>gi|284035039|ref|YP_003384969.1| integrase family protein [Spirosoma linguale DSM 74]
 gi|283814332|gb|ADB36170.1| integrase family protein [Spirosoma linguale DSM 74]
          Length = 298

 Score =  105 bits (263), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 41/276 (14%), Positives = 93/276 (33%), Gaps = 28/276 (10%)

Query: 76  SEYRKSAHW-GSLAVNSRISFESYFDQIIR-KSGDFDYRKITT---KHIRSGVESRKHT- 129
            ++     +   L+ ++  ++ +  +Q       + +  +      +H+RS + S   + 
Sbjct: 5   QDFLAHIRYEKRLSHHTLTAYANDLEQFCTFLLAECNIDQPERADFRHVRSWIVSLVESG 64

Query: 130 --PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              SS  + + ++R  F + +R++ +  +P   ++  K      +   ++ M+       
Sbjct: 65  MDKSSVNRKIATLRNFFGFLLRRKVIDFDPMSKIQALKASKRLPQYVEEKPMEMLLDDIE 124

Query: 188 -----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241
                EG + +L  E L  +G+R S+        +     +I    K      V L    
Sbjct: 125 FPDTFEGLRDKLVLELLYGTGIRLSELTGLKTTDVNLYEKTIVVLGKRNKHRIVPLNQPL 184

Query: 242 MKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAK---ATKAGVNKSAHG 288
            +L+                     +++              K      T  G  KS H 
Sbjct: 185 FELIQQYNLLKEKEFSGQADTAHLIVSDKGVAAYPVLIQRIVKRHLTLVTTLG-TKSPHV 243

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +R   AT   + GA  + +    G  ++   + YT 
Sbjct: 244 LRHTFATHLLNRGADLNAIKDLLGHSSLAATQIYTH 279


>gi|168218110|ref|ZP_02643735.1| DNA integration/recombination protein [Clostridium perfringens NCTC
           8239]
 gi|182379864|gb|EDT77343.1| DNA integration/recombination protein [Clostridium perfringens NCTC
           8239]
          Length = 338

 Score =  105 bits (263), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 42/296 (14%), Positives = 90/296 (30%), Gaps = 48/296 (16%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVESRKH 128
            ++  +     +  L   S   +E     + +   D         +  +HIR+ ++  K 
Sbjct: 14  DVLDTFMTDCKYRDLRRASIRLYERSLKLLFKFLEDDYKLIYVEDVKEEHIRNYIKFTKE 73

Query: 129 TPS----------------------------SAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
                                          +   ++ ++++ FKW V  +Y+  NP   
Sbjct: 74  RGKYSYVSNDNNLDINSPQNRGDFGQPISLCTLDSYVGTIKMFFKWCVDNKYLKQNPTNK 133

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQH 216
           ++R K      +  T ++  +             +  +  + LL +G+R  +        
Sbjct: 134 IKRIKFSRNPKQEVTIDEFNKLLQNLDLTLFSEYRDYVIIQLLLDTGMRIGECLELKEDD 193

Query: 217 LQNN----IFSIKTQKTGTIITVELPDGFMKLLAMTP------IGKETFFINNDKQKMNA 266
           +         S +  K      V   +   + L          +G E  F+ N   K   
Sbjct: 194 VDIRNKTIFISAEIAKGRKDRYVFFSNIMQRTLEKWLIYKDRYVGSEYLFVTNRGSKYQI 253

Query: 267 TQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
             F    +    +A ++K  + H +R   A     +G   + L    G  +V   E
Sbjct: 254 HSFEKHMRNYLKRARIDKKITPHTLRNNFAKRFLMSGGDIYTLSKLLGHSSVRVTE 309


>gi|198283395|ref|YP_002219716.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|198247916|gb|ACH83509.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC
           53993]
          Length = 331

 Score =  105 bits (263), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 54/305 (17%), Positives = 99/305 (32%), Gaps = 31/305 (10%)

Query: 29  HGRRIRLPYPHESTFIPA------YMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSA 82
            GRR+    P  S+   A        + LT ++P  E    P      L  ++  Y K  
Sbjct: 18  DGRRLHRILPAGSSARDAKQVEARLRAELTSASPLPERAGDPP-----LAAVMPLYLKHL 72

Query: 83  HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRV 142
                +  +     +     + +    +  K     IR    +    P++  + L +++ 
Sbjct: 73  E-HLRSPETARFHAARITPWLAQYTASEAPKCAAMIIRDMTGAYA--PATINRSLGALKK 129

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202
               A  QE    N    ++R     E     T E + +  S  S+     +     L++
Sbjct: 130 ALTLAWEQELTPENYGARIKRLPEHNERHIYLTLEQVNELASHASDPVAAAIW--IALFT 187

Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQ--KTGTIITVELPDGFMKLLAMTPIGKETFFINND 260
           G R  +  +   + +     +I+    KT    TV +       L   P+          
Sbjct: 188 GCRRGEITKLKAEDVGETTITIRAGNTKTLKTRTVPIIGPMRLWLPFIPL---------- 237

Query: 261 KQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
              +NA      F+    KAG+     H +R   A+I   +GA  + +    G  +    
Sbjct: 238 --PINAEGLKSGFRRAREKAGLPHLHFHDLRHSCASILLASGADLYTISRILGHSSTKMT 295

Query: 320 ETYTK 324
           E Y  
Sbjct: 296 ERYAH 300


>gi|255291939|dbj|BAH90427.1| tyrosine recombinase [uncultured bacterium]
          Length = 320

 Score =  105 bits (263), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 46/290 (15%), Positives = 82/290 (28%), Gaps = 38/290 (13%)

Query: 72  KWLISEYRKSAH-WGSLAVNSRISFESYFDQI--IRKSGDFDYRKITTKHIRSGVESR-- 126
             LI  Y +       LA  +   +    D++       D     +   H+R  V     
Sbjct: 12  AALIERYLEHVRVEKRLAARTVTLYGLDLDKLGQFAVQDDVGLTAVQGTHVRRWVARMHA 71

Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
              +       L+  R  + W  RQ  +A NP   V  P++     +    ++  Q    
Sbjct: 72  GGRSGRGIALILSGWRGFYAWLGRQGLIAANPVQDVRAPRQPRPLPKALGVDEAVQLAEH 131

Query: 186 WSE------GSQPRLAFEFLLYSGLRCSDSCRA-------------GVQHLQNNIFSIKT 226
            +E       ++     E L  SGLR  +                 G   L      +  
Sbjct: 132 VAESDDPWLDARDAAMVELLYGSGLRVGELAGLDLTASDAALQAGRGWIDLAGAEVQV-Q 190

Query: 227 QKTGTIITVELPDGFMKLLA----------MTPIGKETFFINNDKQKMNATQFSIWFKAK 276
            K      V L    +  L                 +  FI     ++ A       K +
Sbjct: 191 GKGAKRRVVPLGRQAVAALRHWLALRGQVAAVDAAAQALFIGRRGTRLTAQAIWQRLKRR 250

Query: 277 ATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           + +AG+      H +R   A+    +      +    G   +   + YT+
Sbjct: 251 SLQAGLATPVHPHMLRHSFASHLLQSSGDLRAVQELLGHANIGTTQVYTR 300


>gi|253583755|ref|ZP_04860953.1| integrase/recombinase [Fusobacterium varium ATCC 27725]
 gi|251834327|gb|EES62890.1| integrase/recombinase [Fusobacterium varium ATCC 27725]
          Length = 294

 Score =  105 bits (263), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 49/272 (18%), Positives = 97/272 (35%), Gaps = 24/272 (8%)

Query: 75  ISEYRKSAHWG-SLAVNSRISFESYFDQI------IRKSGDFD-YRKITTKHIRSGVESR 126
           I ++   A +G + ++N+  S +    Q+      I K  D      +  +     ++  
Sbjct: 8   IKDFLYFAEFGENKSLNTIKSLKKDLSQLSEYLKNIEKIEDISKITPVMLRGFIIELQKN 67

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
           +    S  + L+S+R  FK+ ++   +  NP   +  P  + E     T E++ + +   
Sbjct: 68  EVGKRSINRKLSSLRSFFKYLIKNNLIKNNPIEIINSPSFEAEKPDILTLEEINKLREVI 127

Query: 187 SE----GSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVEL--P 238
           +     G + RL  E L  SG+  ++    G Q   L N    +   KT   +       
Sbjct: 128 NIDNTNGLRDRLILELLYSSGITSTEMLGIGEQVFDLDNRTLLVSNGKTNRTVFFSQRTR 187

Query: 239 DGFMKLLAM------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290
           + F + +                F+N    +++           A KAG+ +  S +  R
Sbjct: 188 EYFKRYIEAKKEKYKEKYNSSILFVNGSGNRLSDRSLRRIVDRYAAKAGITREISPYSFR 247

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETY 322
              A      G   + L    G  T++  + Y
Sbjct: 248 HTFAVHLLAKGMGLNFLQELMGHVTIESTKIY 279


>gi|261337541|ref|ZP_05965425.1| tyrosine recombinase XerD [Bifidobacterium gallicum DSM 20093]
 gi|270277948|gb|EFA23802.1| tyrosine recombinase XerD [Bifidobacterium gallicum DSM 20093]
          Length = 306

 Score =  105 bits (263), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 39/271 (14%), Positives = 94/271 (34%), Gaps = 31/271 (11%)

Query: 85  GSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSG---VESRKHTPSSAIQFLT 138
             L+  +  ++ +  +Q    +   G  +  +I T+ +      ++++   P+S  + L 
Sbjct: 18  RGLSRATLDAYRTDLEQYLTFLDARGLNEPTRIRTEDVEQFVQHLDAQGLQPASIARRLA 77

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS--------EGS 190
            +R+  ++ +++  VA++   ++  PK         + +D+ Q                +
Sbjct: 78  CVRMFHRFLLQERAVAVDVTATMHAPKTGEHLPDVLSVDDVFQLLDTAQQMASTGDVVAT 137

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGTIITVEL-----------P 238
           +     E L  +G R S++    +  +   +     T K      V              
Sbjct: 138 RDWALLEMLYATGARVSEAVGLNLDDIDETDRVMRLTGKGSKQRLVPFGSTAAQALQQYL 197

Query: 239 DGFMKLLAMTPIGKE---TFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFS 293
           D    +L     G+      ++N   ++++        +  A +A + +    H +R   
Sbjct: 198 DASRPVLEAKAKGERELRAVWLNKRGKRLSRQSAWEVLQTAAGRAKLTRPIHPHTLRHSF 257

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324
           AT     GA    +    G  +V   + YT 
Sbjct: 258 ATHLIQGGADVRSVQELLGHASVQTTQIYTH 288


>gi|312131663|ref|YP_003999003.1| integrase family protein [Leadbetterella byssophila DSM 17132]
 gi|311908209|gb|ADQ18650.1| integrase family protein [Leadbetterella byssophila DSM 17132]
          Length = 275

 Score =  105 bits (263), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 67/170 (39%), Gaps = 9/170 (5%)

Query: 163 RPKRKTE-GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--N 219
            PKRK E   + ++KE++++         + +     +   GLR SD     +  ++  +
Sbjct: 93  YPKRKFESLPKYFSKEEIKRIFDATP-NVKHKAILMIIYSCGLRVSDLINLKMSDIKTHD 151

Query: 220 NIFSIKTQKTGTIITVELPDGFMKLLAMTPIG---KETFFINNDKQKMNATQFSIWFKAK 276
            + SI++ K      V LPD  +K+L         K   F N D  + +     +  K  
Sbjct: 152 KLLSIRSTKNSKDRWVTLPDPLIKILRSYYNEYQPKNYLFENPDGGQYSERSVQLILKRA 211

Query: 277 ATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
               G+    + H +R   A     +G   H + +  G +++   E Y +
Sbjct: 212 LKNGGIKTAGTVHSLRHSFAIHLLQSGTDLHTVQSLMGHQSIKTTEIYAQ 261


>gi|213964199|ref|ZP_03392435.1| tyrosine recombinase XerC [Capnocytophaga sputigena Capno]
 gi|213953166|gb|EEB64512.1| tyrosine recombinase XerC [Capnocytophaga sputigena Capno]
          Length = 308

 Score =  105 bits (263), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 34/260 (13%), Positives = 91/260 (35%), Gaps = 25/260 (9%)

Query: 89  VNSRISFESYFDQIIRKSGDF----DYRKITTKHIRSGVESRKH---TPSSAIQFLTSMR 141
              +    ++   I  +  D        +   + I+  +        +  S  + L++++
Sbjct: 22  EAYKHDLRAFEKFIKSEYEDKEEECPLERADQEDIKKWIIQLSQQEMSFRSINRKLSALK 81

Query: 142 VLFKWAVRQEYVAINPC-LSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS-----QPRLA 195
             + +  + + + ++P    +   K +     P+++ ++++  S++S  S     + R  
Sbjct: 82  TYYTFLKKTKQIEVSPFEKGIFLLKTEKRQKLPFSEAEIEKVLSYFSSKSSFDEVRDRAV 141

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFMKLLA-------- 246
            E L  +G+R S+     +  +      +K    G     + +     + L         
Sbjct: 142 IEMLYATGIRRSELANLRLSDVDLAQKQLKVSGKGDKERYIPIIPELEETLKEYLKLREE 201

Query: 247 -MTPIGKETFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSAHGVRKFSATISADAGAT 303
                 +   F+  + +K+ +T       +   A     + S H +R   A+   D GA 
Sbjct: 202 VANEKSQNYLFLVKNGKKLYSTLVYRIINSYFSAVTPKKDVSPHVLRHSFASHLLDNGAD 261

Query: 304 AHELMATYGWKTVDQAETYT 323
            + +    G  ++   + YT
Sbjct: 262 LNTVKELLGHSSLASTQVYT 281


>gi|156937341|ref|YP_001435137.1| phage integrase family protein [Ignicoccus hospitalis KIN4/I]
 gi|156566325|gb|ABU81730.1| phage integrase family protein [Ignicoccus hospitalis KIN4/I]
          Length = 604

 Score =  105 bits (263), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 43/290 (14%), Positives = 85/290 (29%), Gaps = 40/290 (13%)

Query: 57  KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT 116
           K   +     +P  L   I EY +          +  S+ S     +   GD    ++  
Sbjct: 2   KEPPLKPSPDEP--LSSAIEEYLEFMEVSGANKKTLKSYRSALKDFLSVVGDKRVGEVKY 59

Query: 117 KHIRSG-VESRKHT-PSSAIQFLTS-----------MRVLFKWAVRQEYVAINPCLSVER 163
           +       +  K   P S  +   +           +R   KW   +      P +    
Sbjct: 60  EDYVKWVRKRMKEGFPRSVKKDKRAQQTTLHYYSLFVRNFLKWLGLEGL----PAV---- 111

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNI 221
           PK + + +     E++        E     L    LL +GLR S++    +     +   
Sbjct: 112 PKPRKDSVEALKPEEVAALLQAAYEDPIDFLIVSLLLETGLRASEALNVTLDKVDFRRRQ 171

Query: 222 FSIKTQKTGTIITV--ELPDG--FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKA 277
            +++ +     +     L +         + P G+           ++        K  A
Sbjct: 172 IAVRGKYGKERVVFYGPLTEEALRRAWSYIAPSGRLV--------PLSYQALYKRLKRLA 223

Query: 278 TKAGV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            KAG+       H +R   AT +   G +   +    G   +   + Y  
Sbjct: 224 KKAGLPEHKLHPHALRHTFATEALRRGMSLPAVQRLLGHSDIKTTQIYLH 273


>gi|144897317|emb|CAM74181.1| Tyrosine recombinase xerD [Magnetospirillum gryphiswaldense MSR-1]
          Length = 306

 Score =  105 bits (263), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 40/266 (15%), Positives = 86/266 (32%), Gaps = 27/266 (10%)

Query: 85  GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTK---HIRSGVESRKHTPSSAIQFLT 138
            + A+N+  ++    D +   + K G             ++R+  ++   T + A + L+
Sbjct: 18  RAAAINTLDAYRRDLDDLDNYLTKRGGAPLSARPADLAGYMRALADAGMATRTQA-RRLS 76

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-----SEGSQPR 193
            +R  + +   + + A +P   ++ P+      +  +++ +             +G    
Sbjct: 77  CLRQFYGFVFAEGWRADDPTSRLDAPRLGRSLPKYLSEKQVGDLLDAARALESPQGEMMT 136

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHL-QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252
              E L  +GLR S+        + ++    +   K      V L D     L +    +
Sbjct: 137 ALLELLYATGLRVSELVGLPYSAVARDPALLVVRGKGDKERMVPLSDPARAALRVWLPLR 196

Query: 253 ETFFINNDKQKM-----------NATQFSIWFKAKATKAGVN---KSAHGVRKFSATISA 298
           +         +                F+        KAG++    S H +R   AT   
Sbjct: 197 QDLLGKKKTSRWLFPGSGKTGHLTRAGFARALLRVGMKAGIDPRRLSPHVLRHAFATHLL 256

Query: 299 DAGATAHELMATYGWKTVDQAETYTK 324
             GA    +    G   +   E YT 
Sbjct: 257 AHGADLRVVQELLGHADIATTEIYTH 282


>gi|283458429|ref|YP_003363053.1| site-specific recombinase XerD [Rothia mucilaginosa DY-18]
 gi|283134468|dbj|BAI65233.1| site-specific recombinase XerD [Rothia mucilaginosa DY-18]
          Length = 437

 Score =  105 bits (263), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 76/227 (33%), Gaps = 31/227 (13%)

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
            P+S  + + ++R    + V    V  +P   V  PK      +  + ED+Q+  +    
Sbjct: 190 GPNSIARTMAAVRGAHAFWVSALIVPTDPAAPVTPPKNVKRLPKAVSVEDIQRLLAVPDR 249

Query: 189 ----GSQPRLAFEFLLYSGLRCSDSCRAGVQHL---------QNNIFSIKT-----QKTG 230
               G + R   EFL  +G R S+   A +  +           N  ++        K  
Sbjct: 250 ETATGLRNRAILEFLYATGARVSEMLNADIDDVHFEGTLTDEDGNQITLPGYVRLFGKGN 309

Query: 231 TIITVELPDGFMKLL-----AMTPI------GKETFFINNDKQKMNATQFSIWFKAKATK 279
               V +     K +        P       G    F+N    ++      +  K  A  
Sbjct: 310 KERLVPIGSYAQKAIQDYLVRARPSLVAHGKGTAALFVNGRGGRLGRQGAWLILKEAAEA 369

Query: 280 AGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           AG+  + S H +R   AT     GA    +    G  ++   + YTK
Sbjct: 370 AGLSSDFSPHSMRHSFATHLLQGGADIRVVQELLGHASIATTQVYTK 416


>gi|163814364|ref|ZP_02205753.1| hypothetical protein COPEUT_00515 [Coprococcus eutactus ATCC 27759]
 gi|158449999|gb|EDP26994.1| hypothetical protein COPEUT_00515 [Coprococcus eutactus ATCC 27759]
          Length = 323

 Score =  105 bits (263), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 39/280 (13%), Positives = 96/280 (34%), Gaps = 15/280 (5%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS- 131
             +  +  + H    +  +   +    ++++    +    KITT+ +R  +   + T + 
Sbjct: 47  DFLDMFLTAKHLEGCSDKTIRYYRCNIEKMLDTI-NIPVIKITTEMLRKYLVEYQTTNNC 105

Query: 132 ---SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
              +      S+   F W   ++Y+  +P   + + K           E ++  +   + 
Sbjct: 106 GKVTIDNIRRSLSTFFSWLEEEDYIIKSPMKRIHKVKTAVIVKDTIPDEKIEILRDNCN- 164

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG-----FMK 243
             + R   +FLL +G+R  +  R  +  +  +         G        D       + 
Sbjct: 165 NLRDRAMIDFLLSTGIRVGELVRLNIDDIDFSERECVVYGKGDKERKAYFDAKTKIHLLN 224

Query: 244 LLAMTPIGKETFF--INNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADA 300
            +          F  +N    ++  +   +  +    K GV K   H  R+  AT + + 
Sbjct: 225 YIESRTDNNIALFVSLNKPHSRLTESGVELRLREMGKKLGVEKVHPHKFRRTMATRAIEK 284

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
           G    ++    G + +D    Y    ++  + + + + IS
Sbjct: 285 GMPIEQVQKILGHEQIDTTLRYA-MVNQNNVKLSHRKYIS 323


>gi|332185243|ref|ZP_08386992.1| phage integrase, N-terminal SAM-like domain protein [Sphingomonas
           sp. S17]
 gi|332014967|gb|EGI57023.1| phage integrase, N-terminal SAM-like domain protein [Sphingomonas
           sp. S17]
          Length = 299

 Score =  105 bits (262), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 45/248 (18%), Positives = 82/248 (33%), Gaps = 20/248 (8%)

Query: 95  FESYFDQIIRKSGDFDYRKITT-KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYV 153
           + S         G          + +  G      T  +  +   ++R  + +   +   
Sbjct: 30  YRSDLTLAGEAMGGLAEADEAALRRLAEGWACLATT--TVARKAAALRRFYAFLHEEGLR 87

Query: 154 AINPCLSVERPKRKTEGIRPWTKEDMQQFKSF--------WSEGSQPRLA--FEFLLYSG 203
             +P  ++ RP ++    +  +  D+ +  +             +  RLA   E L  SG
Sbjct: 88  VDDPASALPRPGQRRSLPKVLSHADIDRLFAAIGERIGVAHPAPNDLRLAALIELLYGSG 147

Query: 204 LRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET---FFINN 259
           LR S+        +  +  F I   K G    V + D     +A   +   T   +    
Sbjct: 148 LRASELVALPRNAIHPDRPFLILRGKGGAERMVPISDRARAAVAAWRVHVPTDKAWLFPG 207

Query: 260 DKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTV 316
            K+ ++  +     KA A +AG+     S H +R   AT     GA    + A  G   +
Sbjct: 208 GKRHLSRIRLYQLVKALAAEAGIPPDRVSPHVLRHAFATHLLGGGADLRAVQAMLGHADI 267

Query: 317 DQAETYTK 324
              E YT 
Sbjct: 268 ATTEIYTH 275


>gi|325662745|ref|ZP_08151339.1| hypothetical protein HMPREF0490_02079 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325470982|gb|EGC74210.1| hypothetical protein HMPREF0490_02079 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 361

 Score =  105 bits (262), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 51/283 (18%), Positives = 93/283 (32%), Gaps = 30/283 (10%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVE----- 124
            +  +  Y +      L  ++ IS     D+ I+   G     +IT K IR         
Sbjct: 46  FQDFVDLYFEDMK-HRLKESTIISKRYMVDKKILPVFGKIPINEITPKDIRKWQNGLTAY 104

Query: 125 SRKHTPSSAIQFLTSMR----VLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDM 179
             K+    A  +L ++      +F +AV+   +  NPC       K   E ++ WTK + 
Sbjct: 105 RDKNGKPYAQTYLRAINNQITAMFNYAVKYYDLRENPCTKAGSMGKSNAEEMQFWTKAEF 164

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT---------- 229
           +QF +   +      AF  + Y+G+R  + C      +     +I   KT          
Sbjct: 165 EQFITAVQDKPASYTAFMTMYYTGMRVGELCALTPADVDLKNNTIAISKTFQRINGKDVI 224

Query: 230 ------GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
                  +   + +P      L            N+          +        K+GV 
Sbjct: 225 WAPKTPKSNRVITIPQTLADCLKTYMDKCYEIQPNDRLFPYTKHFLNHEMLRGCKKSGVK 284

Query: 284 K-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
           K   H +R   A++  + G     +    G + +     TY+ 
Sbjct: 285 KIRVHDLRHSHASLLIEMGCQPLLIADRLGHEKIQTTLNTYSH 327


>gi|284991929|ref|YP_003410483.1| integrase family protein [Geodermatophilus obscurus DSM 43160]
 gi|284065174|gb|ADB76112.1| integrase family protein [Geodermatophilus obscurus DSM 43160]
          Length = 365

 Score =  105 bits (262), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 57/335 (17%), Positives = 111/335 (33%), Gaps = 44/335 (13%)

Query: 10  FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
           + ++ R   G+      K   RR+         ++    SA+   T           +  
Sbjct: 17  YRSRYRDAGGRQ---HEKRFQRRV-----DAQRWLDEQTSAIVTQTWTAPERGRVTVEAW 68

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESR-- 126
             +WL ++         L  ++   + S     I+ + G      IT   + + V     
Sbjct: 69  AEQWLAAQ-------TGLKPSTLYRYRSLLRAQILPRWGRHRLADITHADVAAWVAQLVA 121

Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
               P +  Q    + ++   AVR   +  NP   V  P+ +    R  T+E++++    
Sbjct: 122 GGLAPPTVRQAHRVLALILTLAVRDGRIPRNPAAGVPLPRTRRADPRFLTREEVERLADA 181

Query: 186 WSE-GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---------------NNIFSIKTQKT 229
             E G   R     L Y+GLR  +     V+ +                       T KT
Sbjct: 182 AGEYGDVVR----LLAYTGLRFGEMAALRVRRVDFLRRRLTVAESATEVGGTVEYGTPKT 237

Query: 230 GTIITVELPDGFMKLL--AMTPIGKETFFINNDKQKMNATQ--FSIWFKAKATKAGV-NK 284
               TV +P   ++ L       G++   + +    +  +      +F   A  AG+ + 
Sbjct: 238 HQQRTVPIPAVLVEPLSRRCGGKGRDDLVLTSPGGAVLRSGNFRRRFFDPAAKAAGLEDL 297

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
           S H +R  +A++   +GA    +    G  +    
Sbjct: 298 SPHDLRHTAASLLVASGANVKAVQRMLGHASAAMT 332


>gi|13473085|ref|NP_104652.1| site-specific tyrosine recombinase XerD [Mesorhizobium loti
           MAFF303099]
 gi|34222995|sp|Q98FX8|XERD_RHILO RecName: Full=Tyrosine recombinase xerD
 gi|14023833|dbj|BAB50438.1| site-specific recombinase [Mesorhizobium loti MAFF303099]
          Length = 305

 Score =  105 bits (262), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 47/281 (16%), Positives = 94/281 (33%), Gaps = 31/281 (11%)

Query: 75  ISEYRKS-AHWGSLAVNSRISFESYFDQII--RKSGDFDYRKITTKHIRSGVESRKHTPS 131
           I  + +  +     A N+  S+    +        G         +     +  R   P+
Sbjct: 7   IEAFLEMMSAERGAAENTLSSYRRDLEDASSGIDGGLAGAAAADIRAYLDDIAERGFAPT 66

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE--- 188
           S  + L+++R  FK+   +     +P  +++ PK+     +  ++ +  +     +    
Sbjct: 67  SQARKLSAIRQFFKFLYAEGLRTDDPTGTLDSPKKARPLPKTMSEAETGRLIDRAAVEAG 126

Query: 189 ----GSQPRLA-------FEFLLYSGLRCSDSCRAGVQ-HLQNNIFSIKTQKTGTIITVE 236
               G   RLA        E L  +GLR S+     V    +++ F +   K      V 
Sbjct: 127 DAGLGYSDRLAALRLHALVEVLYATGLRVSELVGLPVTVAQRDDRFFMVRGKGDKERMVP 186

Query: 237 LPDGFMKLLAMT-------PIGKETFFIN---NDKQKMNATQFSIWFKAKATKAGV---N 283
           L       +          P   ++ F+    +D   ++   F+   K  A +AG+    
Sbjct: 187 LSAKARVAMRAWLAARAGVPAFADSPFLFPAASDSGYLSRQVFARDLKGLAARAGIASAK 246

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            S H +R   A+     GA    +    G   +   + YT 
Sbjct: 247 ISPHVLRHAFASHLLQNGADLRAVQQLLGHADISTTQIYTH 287


>gi|85708193|ref|ZP_01039259.1| site-specific recombinase, phage integrase family protein
           [Erythrobacter sp. NAP1]
 gi|85689727|gb|EAQ29730.1| site-specific recombinase, phage integrase family protein
           [Erythrobacter sp. NAP1]
          Length = 412

 Score =  105 bits (262), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 59/343 (17%), Positives = 115/343 (33%), Gaps = 24/343 (6%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKGHGRRIR------LPYPHESTFIP-AYMSALTGSTP 56
           S RLP F T+     G+ IY  +     R R           E+  +  A    L     
Sbjct: 37  SRRLPGFGTRFY-ASGRTIYIVQAAMQGRTRTVTIGNAKILSEAQAMDVARRVLLRAQVG 95

Query: 57  KREYINSPRKKPTTL-KWLISEYRK--SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK 113
                   +++   L    +  Y +  S  W +  +++   +    + +          +
Sbjct: 96  HNPAERRKKRRKVPLYADFLDTYWRKVSPSWKTSTLHTHGLYRQ--NYLQSAFAGMFLDE 153

Query: 114 ITTKHIRSGVESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTE 169
           I   H++           P +A +    +R L   A          NPC S+   KR+  
Sbjct: 154 IEQSHVQEWFNRVTEIGGPGAANRSCEILRALMNKAEEWGIKPECSNPCSSIRMNKRRKC 213

Query: 170 GIRPWTKEDMQQFKSFWSEGSQPR----LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225
             R  + ++ ++  +   +  + R     A + L+ +G R S+        ++     + 
Sbjct: 214 E-RFLSDQEFRRLGAAIDKHRKSRPVHCAALQLLILTGCRRSEITGLTWSEVKGRRLLLT 272

Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284
             KTG   TV L +    ++   P  K    +  + +   +   +  ++    KAG+N  
Sbjct: 273 DSKTG-PRTVWLGEAAWTIIKCLPRHKRRPEVFFNPKTGGSVDLTCLWRDVREKAGMNGV 331

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
             H +R   A+ +A    T   +    G + V     Y    D
Sbjct: 332 RLHDLRHSFASHAAARSETLPMIGKLLGHRHVTTTARYAHLDD 374


>gi|326771762|ref|ZP_08231047.1| site-specific recombinase, phage integrase family [Actinomyces
           viscosus C505]
 gi|326637895|gb|EGE38796.1| site-specific recombinase, phage integrase family [Actinomyces
           viscosus C505]
          Length = 307

 Score =  105 bits (262), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 45/296 (15%), Positives = 91/296 (30%), Gaps = 33/296 (11%)

Query: 68  PTTLKWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSG---------DFDYRKITTK 117
           P T   L+  YR        L+ ++  ++    + ++   G         D     +   
Sbjct: 2   PRTRADLLDSYRSYLALQRDLSGHTVRAYLVDINDLLSFLGVGEGDAEPVDAALATLDLA 61

Query: 118 HIRSGVESRK---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
            +R  + +     H+ ++  +   S+R    WA     +  +    +  P+         
Sbjct: 62  DLRDWLAAMAASGHSRATLARRSASVRTFSSWAFETGLLTSDVAARLRAPRVDNRLPGVL 121

Query: 175 TKEDMQQFKSF--------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226
           T +   Q                 +     E L  +G+R S+     V  L ++  +++ 
Sbjct: 122 TTQQASQLLKTASDLASDGHVLAVRDLAIIETLYATGVRVSELVGLDVADLDHSQRTLRV 181

Query: 227 -QKTGTIITVELPDGFMKLLA---------MTPIGKETFFINNDKQKMNATQFSIWFKAK 276
             K     TV       K L                   F+    ++++           
Sbjct: 182 LGKGRKERTVPYGLPAAKALETWLHRRGEICAVDAGGALFLGARGRRIDPRAVRDVVHRL 241

Query: 277 ATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330
              A V +   HG+R  +AT     GA    +    G  ++   + YT   A+R+R
Sbjct: 242 CAAAQVPDLGPHGLRHSTATHVLGGGADLRSVQEFLGHSSLATTQRYTHVSAERLR 297


>gi|289667446|ref|ZP_06488521.1| site-specific tyrosine recombinase XerC [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 305

 Score =  105 bits (262), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 39/267 (14%), Positives = 91/267 (34%), Gaps = 27/267 (10%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGD-------------FDYRKITTKHIRSGV---ESRKH 128
             ++ ++  ++      ++  + +              D  ++ + H+R  V     R  
Sbjct: 15  RQVSAHTLDAYRRDLAALVAWTAEHNTEDGAQQTATPLDTAQLDSAHLRQFVAAEHRRGL 74

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF--- 185
           +P S  + L++ R  + W ++   +A +P  ++  PK   +  +    ++  +       
Sbjct: 75  SPKSLQRRLSACRSYYAWLLKHGRIASSPAAAMRAPKSPRKLPQVLDADEAVRLVEVPTD 134

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPD----G 240
              G + R   E    SGLR S+ C    + L  ++   +   K      V +       
Sbjct: 135 APLGLRDRALLELFYSSGLRLSELCALRWRDLDLDSGLVMVLGKGSKQRLVPVGSHAIAA 194

Query: 241 FMKLLAMTPIGKET-FFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS 297
             + L  +    +T  F       ++     I  K  A + G+  +   H +R   A+  
Sbjct: 195 LREWLRDSGASADTHVFPGRAGGAISQRAVQIRIKQLALRQGMFKDVHPHMLRHSFASHI 254

Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324
            ++      +    G   +   + YT 
Sbjct: 255 LESSGDLRGVQELLGHSDIATTQIYTH 281


>gi|295133019|ref|YP_003583695.1| tyrosine recombinase XerC [Zunongwangia profunda SM-A87]
 gi|294981034|gb|ADF51499.1| tyrosine recombinase XerC [Zunongwangia profunda SM-A87]
          Length = 297

 Score =  105 bits (262), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 42/264 (15%), Positives = 97/264 (36%), Gaps = 24/264 (9%)

Query: 85  GSLAVNSRISFESYF----DQIIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFL 137
            + ++++  ++E+      + ++ +    D + +    IR+ + S   +     S  + +
Sbjct: 14  KNYSLHTLKAYEADLLSFHEFLLAEFECSDLKNVDYAQIRNWIVSLSESGVSNRSINRKI 73

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPR 193
           +S++  + +  +   ++I+P       K   +   P++K ++    +       EG + +
Sbjct: 74  SSLKSYYYFLQKVGELSISPLQKHRPLKMAKKLQVPFSKVEVATVINDIDTDSFEGIRDK 133

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGK 252
              E    +GLR  +    G+  L     +IK   K      + L     K + +    +
Sbjct: 134 AIIELFYSAGLRRIELINLGINDLDLARLNIKVLGKRNKERYLPLLKSVAKTIELYIEQR 193

Query: 253 ETF----------FINNDKQKMNATQFSIWFKAK--ATKAGVNKSAHGVRKFSATISADA 300
                        FI++   KM+ +              A V KS H +R   AT   + 
Sbjct: 194 SHIVPDTAKTSRLFISSKGDKMSESLVYRIINTYFSKVSAKVKKSPHILRHSFATHLLNE 253

Query: 301 GATAHELMATYGWKTVDQAETYTK 324
           GA  + +    G  ++   + YT 
Sbjct: 254 GANLNAVKELLGHSSLAATQIYTH 277


>gi|229004115|ref|ZP_04161916.1| Integrase/recombinase [Bacillus mycoides Rock1-4]
 gi|228756976|gb|EEM06220.1| Integrase/recombinase [Bacillus mycoides Rock1-4]
          Length = 306

 Score =  105 bits (262), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 42/278 (15%), Positives = 92/278 (33%), Gaps = 31/278 (11%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYF---DQIIRKSGDFDYRKITTKHIRSGVE----SRK 127
           + ++++   + +L+  +  S+ +      +   +    D R I    ++S +     +R 
Sbjct: 7   MKDFKEEKEFANLSPRTIQSYMATLHEFQEFCSERELIDTRDIREATVKSYLMYCQKTRG 66

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYV--AINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +   +    L  +++ F +   ++ +    NP   ++  K   + I  +  E ++Q   +
Sbjct: 67  NNVVTRNTKLHHLKIFFNYLQHEDIISEKENPIRKMKLAKEDIK-IEVFQDEHIKQMLRY 125

Query: 186 WSE---------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITV 235
           +             +      FLL +G R  +        L     ++    K     TV
Sbjct: 126 YRRLKARNKSFYAYRDHTIIIFLLGTGSRLGELINIRWSELDLVNQTVTLFGKARKQQTV 185

Query: 236 ELPDGFMK--------LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK---AGVNK 284
            L +  +K        +        E  F   + ++M++    + FK        + V  
Sbjct: 186 PLTNKLVKEFCEYKVFMERELGRLPEYVFTTREGKQMSSNSVKLIFKRLKQVMNFSDVRL 245

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           SAH  R   A     AG     L        +   E Y
Sbjct: 246 SAHTFRHTFAHRCLMAGMDVFTLQRMLRHSNLRMTERY 283


>gi|241764927|ref|ZP_04762927.1| integrase family protein [Acidovorax delafieldii 2AN]
 gi|241365489|gb|EER60254.1| integrase family protein [Acidovorax delafieldii 2AN]
          Length = 327

 Score =  105 bits (262), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 42/290 (14%), Positives = 86/290 (29%), Gaps = 41/290 (14%)

Query: 75  ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKIT-----TKHIRSGVESRKH 128
           +  Y + A     LA  +   +    D++ R +       +       +   + + S   
Sbjct: 15  VLRYLEHARVEKRLAARTLTLYALDLDKLARFAAAVQVPLLQLGSAHIRRFVAQMHSGGR 74

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           +       L+  R  F WA RQ  ++ NP   V  P+      +    +D  +   +   
Sbjct: 75  SGRGIALILSGWRGFFAWAGRQGLISHNPVQDVRAPRAPKPLPKALGVDDAVRLAEYDHS 134

Query: 189 G------SQPRLAFEFLLYSGLRCSDSCRA-------------GVQHLQNNIFSIKTQKT 229
           G      ++     E L   GLR  +                 G   L+     +   K 
Sbjct: 135 GADPWLEARDAAMVELLYGCGLRVGELVGLDAAPHADSRRQGRGWVDLEAGEAHV-FGKG 193

Query: 230 GTIITVELPDGFMKLL-------------AMTPIGKETFFINNDKQKMNATQFSIWFKAK 276
               +V +    M  L               +P      F+     ++ A    +  + +
Sbjct: 194 SKRRSVPVGAAAMAALRAWLALRAAPFGGDASPRLDAALFVGRRGVRLTAQSIWLRLRQR 253

Query: 277 ATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           + +AG+      H +R   A+    +      +    G   +   + YT+
Sbjct: 254 SQQAGLTTPVHPHMLRHSFASHLLQSSGDLRAVQELLGHANITTTQVYTR 303


>gi|323479888|gb|ADX79327.1| phage integrase family protein [Enterococcus faecalis 62]
          Length = 223

 Score =  105 bits (262), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 34/206 (16%), Positives = 79/206 (38%), Gaps = 19/206 (9%)

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           ++ ++   S+    ++ ++ LF + + ++Y+  NP + +ER K + + I P    +++Q 
Sbjct: 1   MQEKEMQASTINVSVSRLKKLFDYMLIEKYIDYNPFVDIERLKEQRKVIYPLNDYEIKQM 60

Query: 183 KSFWSEGSQPRLA------FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
            +   +     +A         ++  GLR S+ C    + + NN   I+  K      V 
Sbjct: 61  LTVAKKHPYKHIAQRNVVILMLMIECGLRISEVCEIRDEDIMNNQIIIRKSKNNKDRAVA 120

Query: 237 LPDGFMKLLAMTPI---------GKETFFINNDKQKMNATQFSIWFKAKATKAGV-NK-- 284
           +     K +                  F ++N  +K+N        +    +  + +   
Sbjct: 121 VSPILKKEIIKYQRIKKRKFGLLEGNPFIVSNLGKKLNEKSIWQIMQEIKKQIDIRDCVR 180

Query: 285 -SAHGVRKFSATISADAGATAHELMA 309
            S H +R   A++    G   + L +
Sbjct: 181 FSGHTLRHTYASMQLRNGLDIYTLSS 206


>gi|126728166|ref|ZP_01743982.1| site-specific tyrosine recombinase XerC [Sagittula stellata E-37]
 gi|126711131|gb|EBA10181.1| site-specific tyrosine recombinase XerC [Sagittula stellata E-37]
          Length = 308

 Score =  105 bits (262), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 48/296 (16%), Positives = 95/296 (32%), Gaps = 32/296 (10%)

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII--------RKSGDFDYRKI 114
           SP  +     WL             + N+  ++ +     I           G     ++
Sbjct: 6   SPAARTALADWLDHA----KALREASDNTITAYRADVIDFIAFLTQHHAEPQGLAPLARV 61

Query: 115 TTKHIRSGVESRKHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
           TT  +R+ +   + T   P S  + L++++  ++W   +E       L+   PK + +  
Sbjct: 62  TTSDMRAWMAHLRRTEIGPRSMARKLSAVKTFYRWLADREGFEPTAVLATRAPKFQKKLP 121

Query: 172 RPWTKEDMQQFKSFWSE-------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
           RP ++E  +               G++       L   GLR S++     +HL       
Sbjct: 122 RPLSEEAARAMIDTVEIQSTTSWQGARDAAVVTLLYGCGLRISEALSLTGRHLPLTDSLR 181

Query: 225 KTQKTGTIITVELPDGFMKLLAM-------TPIGKETFFINNDKQKMNATQFSIWFKAKA 277
              K      V +     + +          P      F       +N    +   +   
Sbjct: 182 IVGKGNKERVVPVLPVARRAVETYLSLCPFPPERDVALFRGARGGPLNPRLIAKVTEQAR 241

Query: 278 TKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            + G+  +A  H +R   AT    AG     +    G  ++   + YT   D++ L
Sbjct: 242 MQLGLPATATPHAMRHSFATHLLHAGGDLRAIQELLGHASLSTTQAYT-AVDQVHL 296


>gi|121997131|ref|YP_001001918.1| phage integrase family protein [Halorhodospira halophila SL1]
 gi|121588536|gb|ABM61116.1| phage integrase family protein [Halorhodospira halophila SL1]
          Length = 379

 Score =  105 bits (262), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 61/365 (16%), Positives = 119/365 (32%), Gaps = 33/365 (9%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKG------------HGRRIRLPYPHESTFIPAYMSAL 51
           S R  P +  E    G   Y++R                R I L        +    +++
Sbjct: 22  SDRKAPGLIVEVRPTGSATYFYRYRNHAGLTRSCKLARFREISLKDARS---LAREKASI 78

Query: 52  TGSTPKREYINSPRKKPTTLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD 110
             S    +   + R+   TLK    E Y   A     +  +     ++    +   G   
Sbjct: 79  VASGHDPQEEKNTRRASPTLKEYAEECYLPHAKSYKRSWKTDEIMLNH--HALPTLGTKK 136

Query: 111 YRKITTKHIRSGVESRKHT---PSSAIQFLTSMRVLFKWAVRQEY--VAINPCLSVERPK 165
              I    + + +   K     PS+  + LT +  +FK A+  E   V  NP   ++RP 
Sbjct: 137 MSDINRNQVEAIMNDMKSRGYAPSTVDRVLTLISYMFKVAMDNEIPGVVSNPTEKIKRPV 196

Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQ--NNI 221
              +     T+E++ +        + P +       + +G R ++   A  +     N I
Sbjct: 197 IDNKIENYLTREEVNRMLEAARRRNHPHIYSIIRMAVLTGARKAEILSARFEDFDLDNKI 256

Query: 222 FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281
           ++I   K G+   +        +  +                         FKA    +G
Sbjct: 257 WNIPKGKNGSRKVILAEKAVQMVKELPKQEGTDLLFPQPGTDKPYQCIQKPFKAVLRDSG 316

Query: 282 VNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSRR 338
           +++S   H +R   A++    G   +E+    G   +     Y    A  +R    +S R
Sbjct: 317 IDESVRFHDLRHSYASLLVQGGVNIYEVKELLGHSQITTTMRYAHLSAQGLR---NHSNR 373

Query: 339 ISSVV 343
           ++  +
Sbjct: 374 LAETI 378


>gi|283479882|emb|CAY75798.1| Tyrosine recombinase xerD [Erwinia pyrifoliae DSM 12163]
          Length = 351

 Score =  105 bits (262), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 44/289 (15%), Positives = 99/289 (34%), Gaps = 32/289 (11%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFE---SYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
           TL+ L   +         +  +   +      F       G     +++   + +     
Sbjct: 20  TLRQLAESWLAHLVVAGRSPRTVQGYRERVRAFLXWCEPRGITYAPQVSLAVLEAYQRWL 79

Query: 127 KHTPSSAIQ---------FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI-RPWTK 176
           +    +  +          LT++R+LF+W +++  +  NP   +  PK +     + +++
Sbjct: 80  QGYRRADGKQLVVNSQLGVLTAIRMLFRWLLQRHVILYNPAELLALPKEERRLPAQVFSE 139

Query: 177 ED----MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTG 230
            +    +Q   +    G + R   E L  SG+R S+     +  +     + +++  K G
Sbjct: 140 AETRRVLQSLDAGTPPGLRNRAILELLWSSGIRRSELAGLLLSDVDFTRGVVNVRRGKGG 199

Query: 231 TIITVEL----PDGFMKLLA------MTPIGKETFFINNDKQKMNATQFSIWF-KAKATK 279
               V +         + L                FI++    +     +    +A    
Sbjct: 200 KDXVVPVGHAALMWLGRYLKDVRPRLAQRFDSGHLFISHKGTGLAHGTLTAMAGRAIREG 259

Query: 280 AGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           A + K+   H  R   AT   + GA    + A  G + ++  + YT+ A
Sbjct: 260 AHLKKAGACHIFRHXMATQMLENGADTRHIQAILGHEKLETTQIYTRVA 308


>gi|284032633|ref|YP_003382564.1| integrase family protein [Kribbella flavida DSM 17836]
 gi|283811926|gb|ADB33765.1| integrase family protein [Kribbella flavida DSM 17836]
          Length = 312

 Score =  105 bits (262), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 51/307 (16%), Positives = 107/307 (34%), Gaps = 29/307 (9%)

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRK---SGDFDYRK 113
            + +++    P     L+++Y +       L+ +S  ++      +I      G  D   
Sbjct: 3   PDDVSADPSVPEDFAALLADYERHLTAERGLSEHSVRAYMGDVADLIDHVTRLGHDDLSA 62

Query: 114 ITTKHIRSGVESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170
           +  + +RS +  ++      S+  +  T+ RV   WA R   +A +P   +  PK     
Sbjct: 63  LDIRGLRSWLAKQQSLGKARSTMARRATAARVFTAWAQRTGRIATDPGALLASPKAHKTL 122

Query: 171 IRPWTKEDMQQFKSFW--------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222
                + D +                G +     E L  +G+R  + C   V  +  +  
Sbjct: 123 PGVLGQADTRAVLDAAAVAADDGSPVGLRDLTIMELLYATGIRVGELCALDVDEVDRSRR 182

Query: 223 SIKTQKTGTIIT-----VELPDGFMKLLAMTPI-----GKETFFINNDKQKMNATQFSIW 272
            ++    G         V   +     LA+ P           F+     +++       
Sbjct: 183 VVRVFGKGRKERSVPYGVPAAEALETWLAVRPRLVRDGSGPALFLGARGGRIDQRTVRRV 242

Query: 273 FKAK--ATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRI 329
             A+  A +A  + S HG+R  +AT   + GA    +    G  ++   + YT   ++R+
Sbjct: 243 VHARIGAVEA-PDLSPHGLRHTAATHLLEGGADLRSVQELLGHASLATTQVYTHVSSERL 301

Query: 330 RLGIKNS 336
           R   + +
Sbjct: 302 RSAYEQA 308


>gi|77463785|ref|YP_353289.1| phage-related integrase [Rhodobacter sphaeroides 2.4.1]
 gi|77388203|gb|ABA79388.1| possible phage-related integrase [Rhodobacter sphaeroides 2.4.1]
          Length = 413

 Score =  105 bits (262), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 67/362 (18%), Positives = 125/362 (34%), Gaps = 46/362 (12%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK----PTT 70
           R RHG +      G    + L    E        +A  G+ P  E   +   K       
Sbjct: 43  RYRHGGVHRRMSLGAFPVLSLAGARERA-RQTLAAASAGTDPAAEVKAAKAPKLDGDRDK 101

Query: 71  LKWLISEYRKSAHWGSLAVNS--RISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128
           +K LI ++ K  H   L   +  R   E +   ++   G+ D  +I  + +   ++    
Sbjct: 102 IKTLIGQFDK-RHLSKLKSGAVVRRELERH---VVSAWGERDVHQIGKRDVIDLLDGIAD 157

Query: 129 TPS--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
           +    +A +    +   F W V ++ +A +P   V+   ++T   R  T ++++ F +  
Sbjct: 158 SGRVVTANRVRAYLAKFFGWCVERDILATSPAAGVKPAGKETSRARVLTDDEIRWFWTAC 217

Query: 187 SEGSQPRLAF-EFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMK 243
                P   F + LL +G R ++  +     ++ +++ +     K G    V L      
Sbjct: 218 EAEGFPWGPFGKVLLLTGQRLNEVAQMTDSEIRGDLWHLTADRTKNGRAHDVPLTGAVRA 277

Query: 244 LLAMTPI-----GKETFFINNDKQKMNATQFSIWFKAKATKA----GV------------ 282
            L          G+  F      +    T  S +FKA+A  A    G+            
Sbjct: 278 ALDEVERVTDEEGRVRFIFTTTGR----TPVSGFFKARAVLAEAMVGIAQKERGEPVEIP 333

Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVD---QAETYTK--GADRIRLGIKNSR 337
             + H +R+ +AT  A  G       A     +         Y +   AD  R  ++   
Sbjct: 334 RWTFHDLRRTAATGMARLGIPVRVTEAVLNHVSGTGGGIVAVYQRHDYADEKRQALEAWA 393

Query: 338 RI 339
           R 
Sbjct: 394 RF 395


>gi|261494505|ref|ZP_05990991.1| putative integrase/recombinase [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261309889|gb|EEY11106.1| putative integrase/recombinase [Mannheimia haemolytica serotype A2
           str. OVINE]
          Length = 346

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 63/337 (18%), Positives = 105/337 (31%), Gaps = 31/337 (9%)

Query: 7   LPPFVTKERTRHGK----IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62
           LP  +   R + G       Y++   +G+   L           Y + L     K  + N
Sbjct: 12  LPQNLLCRRRKRGNGQIVEYYFYVLSNGKEKSLG-------TNKYEAVL--EAAKLNFEN 62

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIR 120
           S +        +   Y         A N+R S       + +  GD      KI  KHI 
Sbjct: 63  SKKSPVVLFIDVAKRYELEIVPTKKAKNTRQSNLQAIRWLCKFFGDPPAPLEKIEPKHIS 122

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA-INPCLSVERPKRKTEGIRPWTKEDM 179
             ++ RK TP+ A   +     ++  A    Y    +P   V++   K   +       +
Sbjct: 123 QYLQWRKDTPAVANIEVGLFNTIWNMAREWGYTTLPSPSQGVKKFPTKYREVYV-EDYIL 181

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239
            +   F  E        E     G R  D C     H+ + I  I  QKTG  +  E+  
Sbjct: 182 DKIYEFADERMAD--IIETAYLLGQRPIDICNIHHSHIYDGILHITQQKTGKKVRFEISG 239

Query: 240 GFMKLLA-MTPIGKETFFINNDKQKMNATQFSIWFKAKATKA---------GVNK-SAHG 288
              ++L        +  F N   +K+        FK    +A          + K     
Sbjct: 240 RLKEILDKRLGYESDWIFTNKWGKKLKRRSLGDHFKEIRERAMKAYPELADEIAKVQMRD 299

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           +R  +AT  +    T  +     G  +      Y + 
Sbjct: 300 MRAKAATDISLM-TTDEQAQKQLGHTSKRMTHHYIRK 335


>gi|254820529|ref|ZP_05225530.1| prophage integrase [Mycobacterium intracellulare ATCC 13950]
          Length = 340

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 48/304 (15%), Positives = 101/304 (33%), Gaps = 29/304 (9%)

Query: 45  PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QII 103
            A+ +   G          PR    +L  + ++Y  S    +++  +   +  +++ +I 
Sbjct: 5   RAFKADRDGEAAIGARRFDPRLGRASLSAIWTQYSASKQ-PAVSPKTWSGYAQHWELRIS 63

Query: 104 RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163
            + G     +I+ K ++  +      P + +  L  +R +   A     + INP   V  
Sbjct: 64  PRFGHVPVDEISRKDVQQFIGGLTVGPWAKLATLRLLRSILDMAREDGRIHINPAQGVSS 123

Query: 164 PKRK-TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---- 218
            +    E  R  +  ++        +          L ++GLR S+     V  +     
Sbjct: 124 GRIPARERHRYLSATEVAALAHACGD---QGDIVTILAFTGLRWSELVGLRVGDIDLKAR 180

Query: 219 -----------NNIFSIKTQKTGTII-TVELPDGFMKLLAMTPIGKET---FFINNDKQK 263
                           +   KT   + TV LP   +  L      + T      + +   
Sbjct: 181 RLYVRQAAPDVEGRIIVGPPKTRAAVRTVPLPRIVIDALKPRIENRSTKEQAITSPNGGF 240

Query: 264 MNAT---QFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QA 319
           + +    + + W KA         + H +R   A+++  +GA    +  T G  T    A
Sbjct: 241 LRSNNWRRHTHWNKALKKTGLAPLTIHDLRHTYASLARKSGADLRYVQKTMGHSTPTVTA 300

Query: 320 ETYT 323
             Y+
Sbjct: 301 NIYS 304


>gi|168185133|ref|ZP_02619797.1| tyrosine recombinase [Clostridium botulinum Bf]
 gi|182671818|gb|EDT83779.1| tyrosine recombinase [Clostridium botulinum Bf]
          Length = 327

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 47/278 (16%), Positives = 103/278 (37%), Gaps = 26/278 (9%)

Query: 83  HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP----SSAIQFLT 138
            +  L+ N+        D  I+   +   + I+   I + ++  K+      ++  + + 
Sbjct: 41  RFLKLSKNNLPLNTDIKDVCIKDIDENFLKSISLIDIYNFLDYIKNYRDNCSNTRARKVA 100

Query: 139 SMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-----GSQP 192
            ++  F +   + + + +NP  ++E PKR        + ++ +               + 
Sbjct: 101 VLKSFFNYLKNKVKIIELNPTKNLETPKRPKRQPVYLSLKESEMLLDAVKIKNGRNKERD 160

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL------- 245
                  L  GLR S+ C   + +++N+   I T K     T+ L +  +K +       
Sbjct: 161 YAIITLFLNCGLRLSELCNIKLSYIRNDTLII-TGKGDKQRTIYLNNSCLKAINEYLNVR 219

Query: 246 ----AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
                +     +  F++  KQK+N        +     AG++K  + H +R  +AT+   
Sbjct: 220 NKLKNIKDKDSDYLFLSERKQKINKRSVQRIVQKFIEYAGLDKKYTVHKLRHTAATLLYK 279

Query: 300 AG-ATAHELMATYGWKTVDQAETYTK-GADRIRLGIKN 335
            G      L    G + +     YT    D +R  +K+
Sbjct: 280 YGEVDIRNLQVILGHENISTTTIYTHVDKDELRSALKS 317


>gi|108804268|ref|YP_644205.1| phage integrase [Rubrobacter xylanophilus DSM 9941]
 gi|108765511|gb|ABG04393.1| phage integrase [Rubrobacter xylanophilus DSM 9941]
          Length = 309

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 43/295 (14%), Positives = 103/295 (34%), Gaps = 34/295 (11%)

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISF----ESYFDQIIRKSGDFDYRKITTK 117
           +SP  +P   + L+S Y ++      +  ++ ++     ++   +  + G  +  ++T +
Sbjct: 6   SSPPARPGDEERLLSLYLRTLS----SPQTQKTYNTEIRAFLSYLRERLG-KNLGEVTAE 60

Query: 118 HIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS---VERPK-RKTEGI 171
            I    E     + P++A + LT++R    +        +NP       + P+ R+    
Sbjct: 61  DISLYREHVTGAYAPATAAKKLTALRRFLTFTYMGGITRVNPEALKFFAKSPRVRQDPSY 120

Query: 172 RPWTKEDMQQFK-SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQK 228
              T+E++ +   +  ++  +       +   GLR ++     V   +   +   ++ + 
Sbjct: 121 NILTEEELSRMLSAARADNPRDHALLAVMAGCGLREAEVVGLRVGDFREHGDAVLLRVRG 180

Query: 229 TGTIIT-VELPDGFMKLLAM-----------TPIGKETFFINNDK--QKMNATQFSIWFK 274
            G  +  V +     +L+                 ++  F +     + +         K
Sbjct: 181 KGDKVRNVPVSPELWRLVQRYVLSSGRSLSSQTDARKPLFPSRVGKDRPLTTRSIQNIVK 240

Query: 275 AKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
                AG+NK  S H +R    T  A   A    +    G         Y + A+
Sbjct: 241 KYVRAAGINKPISPHSIRHTVGTNMAMNQAPLLVIQQFLGHSDPKTTMRYIRRAE 295


>gi|229193213|ref|ZP_04320164.1| Integrase [Bacillus cereus ATCC 10876]
 gi|228590190|gb|EEK48058.1| Integrase [Bacillus cereus ATCC 10876]
          Length = 345

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 50/314 (15%), Positives = 96/314 (30%), Gaps = 41/314 (13%)

Query: 50  ALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF----DQIIRK 105
           AL     + E          TL+  +           L   +   +   +    D +   
Sbjct: 2   ALKRKKKRAERTTHKSYPKITLQQALDIAIAGKKAEGLRERTLTDYMKMWGYFTDWLAEN 61

Query: 106 SGDFDYRKITTKH--------------------IRSGVESRKHTPSSAIQFLTSMRVLFK 145
             D +Y    T                        +  E R    ++    L + R +  
Sbjct: 62  YSDIEYVNELTADIFRNYINYLQYDAIRYDGHKFITNREERGLKETTINIRLRTYRSMLN 121

Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FWSEGSQPRLAFEFLLY 201
           +  R+E +  NP  +V   ++  +     T+++++   +        G +  +    LL 
Sbjct: 122 YLEREELIEYNPMDNVRLLRQDIDLTNCLTEDEVKAVLAQPNQRDYVGFRDFVIINLLLD 181

Query: 202 SGLRCSDSCRAGVQ--HLQNNIFSIKTQ--KTGTIITVELPDGFMKLL------AMTPIG 251
           SGLR +++    V+    +    ++  +  K      V +     KLL            
Sbjct: 182 SGLRINEALNLRVEEIDFKTRFITLTGERNKNRKPRYVPISAFVAKLLLQLIEENRAHFK 241

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATISADAGATAHELM 308
            +  F++   + + A  F+   K  A KAG+     +AH  R   A      G     L 
Sbjct: 242 TDRIFLSCFGELLGANHFNKRLKYYAEKAGIKGKKVTAHVYRHTWAKNMILNGCDPFTLQ 301

Query: 309 ATYGWKTVDQAETY 322
              GW  +     Y
Sbjct: 302 KMGGWADMRTMRRY 315


>gi|310642278|ref|YP_003947036.1| integrase family protein [Paenibacillus polymyxa SC2]
 gi|309247228|gb|ADO56795.1| Integrase family protein [Paenibacillus polymyxa SC2]
          Length = 318

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 41/277 (14%), Positives = 93/277 (33%), Gaps = 25/277 (9%)

Query: 91  SRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS---SAIQFLTSMRVLFKWA 147
           ++ ++     Q +R   D    ++   H+ S +   +   +   +  +   ++   F+  
Sbjct: 40  TQKNYTGDVKQFLRTLRDKPLDQVKKIHVMSYLSKAREGGAGDSTRNRKHAAVNSFFRAL 99

Query: 148 VRQEYVAINPCLSVERPKR-KTEGIRPWTKEDMQQFK--SFWSEGSQPRLAFEFLLYSGL 204
              E  + NP   +++ K  K        ++D+Q F         ++    F  ++Y GL
Sbjct: 100 QEFELCSTNPAAGIKKAKTEKNRMPVYLDEKDIQPFLLAVEGKYANRNMAIFLLMVYMGL 159

Query: 205 RCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG--------FMKLLAMTPIGKETF 255
           R  +     V        ++    K     T+ +P            + L      ++  
Sbjct: 160 RVGEIHSLNVSDYSRERRTLDVFGKGRKWRTLPVPAAVCDFVEHALEERLTPWRGKEDAM 219

Query: 256 FINNDKQKMNATQFSIW----FKAKATKAGVNK----SAHGVRKFSATISADAGATAHEL 307
           FI+   +++            F+      G+ +    S+H +R   AT+    GA    +
Sbjct: 220 FISQKGRRLAVRSIQQIATETFERFQQDKGLERREAYSSHKLRHTFATMLLRKGADLRTV 279

Query: 308 MATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
               G  ++     YT   DR +   K   ++   + 
Sbjct: 280 QELLGHSSIQTTTVYTHVTDREK--EKAMDKLDIQIP 314


>gi|288934630|ref|YP_003438689.1| lambda integrase [Klebsiella variicola At-22]
 gi|288889339|gb|ADC57657.1| lambda integrase [Klebsiella variicola At-22]
          Length = 361

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 59/352 (16%), Positives = 106/352 (30%), Gaps = 37/352 (10%)

Query: 7   LPPFV-TKERTRHGKIIYYFRKG-HGRRIRLPYPHESTFIPAYMSA---LTGSTPKREYI 61
           LP  +  ++R R    +Y +R    G+ I L        +   + A   +  +      +
Sbjct: 12  LPRNLTYRKRDR----LYSWRNPITGQEISLGRVDRKDAVAQAIEANNYIDQNYLPSSLL 67

Query: 62  NSPRKKPT-TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
           +  +  PT T    +  Y        L  N+     +    I  + G      +TTK I 
Sbjct: 68  DRLKDVPTFTFSAWLERYEVILERRELKPNTMKVRRNQLATIKEEFGRIPLASVTTKDIA 127

Query: 121 SGVESRK--HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
             +E        S A    + +  +F+ A+ + ++  NP      P  K +  R    E 
Sbjct: 128 EFLEGYIVCDKKSMASGLRSVLLDVFREAIVEGHIDRNPAEPTRTPTPKVKRERLL-LEQ 186

Query: 179 MQQFKSFWSEGSQ-PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE- 236
               +   S  S   R A +  L +G R  D        ++     I  +KTG  + V  
Sbjct: 187 FTIIRDAASSHSDWARNACDLALVTGQRREDITLLRFSAVKEERLFITQEKTGHKLAVPL 246

Query: 237 ----------LPDGFMKLLAMTPIGKETFFINNDK----QKMNATQFSIWFKAKATKAGV 282
                     L D   +     P     +            +     +  F        +
Sbjct: 247 DLKLDAAGLMLHDVIERCREGNPSDFMVYSPVRRGGRKPGPLTPDGLTQAFADIRDSTEL 306

Query: 283 NK-----SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY--TKGAD 327
                  S H +R   A+   +            G K +   + Y   +GA+
Sbjct: 307 KFGPNPPSFHEIR-SLASRLYENERGEEFAQRLLGHKNLTMTKKYLDARGAE 357


>gi|320539088|ref|ZP_08038759.1| putative phage integrase [Serratia symbiotica str. Tucson]
 gi|320030726|gb|EFW12734.1| putative phage integrase [Serratia symbiotica str. Tucson]
          Length = 356

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 53/353 (15%), Positives = 119/353 (33%), Gaps = 34/353 (9%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR- 65
           LPP +     R+     Y       R    +   +    A   A+  +    E  +  R 
Sbjct: 12  LPPNLY---VRNNGYYCY----RSPRNGKEFGMGTNKKEAVNQAIEPNITLFESYSQSRL 64

Query: 66  ------KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119
                     ++   +  Y +      L   +   +    + +       + ++ITTK I
Sbjct: 65  INRLIGNNANSMLTWLDRYHEIISKRGLREKTLGDYSGRINLLKEYFVGTNLQEITTKDI 124

Query: 120 RSGVESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
              + S       +SA    +++  +F+ A+ +  + +N   +   P+ + +  R   + 
Sbjct: 125 AKLLNSYTDQGKAASAKLMRSTLLDIFREAIAEGMIQLNLVEATRNPRVEVKRERLSLEN 184

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237
            +   ++  +  S   L+ +  L +G R  D  +     ++++   ++ QKTG  +++ L
Sbjct: 185 FLLIRQAATTLPSWIGLSMDIALLTGQRLGDIRKMKWSDIKDDKLYVEQQKTGVKLSIPL 244

Query: 238 PDGFMKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKA-----GV 282
             G   +                G ET   +  ++ +     S WF            G 
Sbjct: 245 SIGLPAVDMTLNSVIEICQKIHAGSETILASRKQEMLGEKTISKWFAKSRELTLLSWSGS 304

Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY--TKGADRIRLGI 333
             S H +R   +        +        G K+    E Y  ++G++ I + +
Sbjct: 305 PPSFHEIR-SLSARLYTDTISGEFAQKLLGHKSAAMTEKYQDSRGSEWIEIAV 356


>gi|313123990|ref|YP_004034249.1| integrase [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|312280553|gb|ADQ61272.1| Putative integrase [Lactobacillus delbrueckii subsp. bulgaricus
           ND02]
          Length = 370

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 53/362 (14%), Positives = 130/362 (35%), Gaps = 38/362 (10%)

Query: 14  ERTRHGKIIYYFR-----KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
           ++ + GK  +Y R      G  +R+       S       + L  +    +  ++  +  
Sbjct: 10  KKMKSGKYQWYQRYRDPLTGKIKRVTCLLSRGSQQARK-EAELILARKLADISDARTETN 68

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG-DFDYRKITTKHIRSGVES-- 125
            T+  L   +        +   +     +    +++  G D   + IT   +   ++S  
Sbjct: 69  ITIGELSKLFLDHERERGVKPTTLSVRRTGMSAMLKYFGEDAIAKNITKPMVTKYLQSSL 128

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV----ERPKRKTEGIRPWTKEDMQQ 181
           +K T S+   +   M  ++ +A+   Y+  NP   +    +  K  +   + +T E++  
Sbjct: 129 KKKTNSTVHVYRVGMSTMYDFAIDYGYLTENPAKGLRIQWKPQKPTSITDKYFTDEELNN 188

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN------NIFSIKTQKTGTI--- 232
             +        RL F+F+  +G+R  ++     +++ +              K+ +    
Sbjct: 189 LFAVIDRPDYLRL-FKFMYLTGMRFGEATGLQFKNIHDQYADITGTMWANGIKSDSPKTL 247

Query: 233 ---ITVELPDGFMKLL------AMTPIGKETFFINNDKQ-KMNATQFSIWFKAKATKAGV 282
               +V LP   ++++             +  FIN  K         +++ K K+ +AG+
Sbjct: 248 ASFRSVFLPKQAVEIIKWFKQYDRNTEPDDFIFINQLKHVPFKMNTVALYLKNKSREAGI 307

Query: 283 NK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRI 339
           ++  + H  R    +  A+ G   H +    G    +   E Y       ++  +  ++I
Sbjct: 308 DRKITTHFFRHTHISKLAEQGVPLHVIQKRVGHTKAETTREIYLHVT--KKMQEEMEKQI 365

Query: 340 SS 341
           + 
Sbjct: 366 ND 367


>gi|259417091|ref|ZP_05741010.1| phage integrase [Silicibacter sp. TrichCH4B]
 gi|259345997|gb|EEW57811.1| phage integrase [Silicibacter sp. TrichCH4B]
          Length = 391

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 51/306 (16%), Positives = 95/306 (31%), Gaps = 21/306 (6%)

Query: 49  SALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR-KSG 107
           +A+       +     +++  +L  L   + +S     L   +   + S +  I+    G
Sbjct: 80  AAMVARGQDPQSDKIKKREAPSLVDLWGRFEES-DMKRLKPATIRDYRSLWKNILEPALG 138

Query: 108 DFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA--INPCLSVERPK 165
                 I+   +     S   TP  A + +  +  +   A   E+     NPC  V R +
Sbjct: 139 KRRVADISRADVDRLHRSMSDTPYQANRSIAVLSKMMTLAEIWEWRDQGTNPCRYVTRHR 198

Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRLA-------FEFLLYSGLRCSDSCRAGVQHLQ 218
                 R  + E++++  +  +      L        F  LL  G R S+        + 
Sbjct: 199 EGKRE-RYLSTEELERLGAALTNLVDLGLLWPDMANLFRLLLLVGARRSEISNCEWNWID 257

Query: 219 --NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET----FFINNDKQKMNATQFSIW 272
               I ++   KTG    + L +  + +L    I        F     K        S  
Sbjct: 258 WERRIIALPDSKTGAK-PLFLSNEAITVLQNQKITTRHQSSKFVFPGAKANKAIVNLSKP 316

Query: 273 FKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330
           +K    +A + N   H +R  +A+I+   G     +    G         Y    AD   
Sbjct: 317 WKLICEEAELENLRIHDLRHTAASIAVGQGVALPIIGRLLGHTQTQTTARYAHVDADPAL 376

Query: 331 LGIKNS 336
                 
Sbjct: 377 KAANAI 382


>gi|68536254|ref|YP_250959.1| integrase/recombinase [Corynebacterium jeikeium K411]
 gi|260578954|ref|ZP_05846857.1| tyrosine recombinase XerC [Corynebacterium jeikeium ATCC 43734]
 gi|68263853|emb|CAI37341.1| integrase/recombinase [Corynebacterium jeikeium K411]
 gi|258602928|gb|EEW16202.1| tyrosine recombinase XerC [Corynebacterium jeikeium ATCC 43734]
          Length = 301

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 39/269 (14%), Positives = 89/269 (33%), Gaps = 19/269 (7%)

Query: 75  ISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFD-YRKITTKHIRSGVESRKHTPSS 132
           + +Y +   H    + N+  ++    D  +      + +     + +         + +S
Sbjct: 16  LDDYEQHLRHVVGRSENTIRAYRQNLDSALEGLERIEEFDLDRARDVLGWAVDNGASRAS 75

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW-TKEDMQQFKSFWSEGS- 190
             +  +SMR    +   + +V  NP  +++ PK +    R   + +          EG  
Sbjct: 76  LSRLASSMRGFGAFLAHRGFVQANPVAALKAPKPQRTLPRVLRSDQASDMLNGLQPEGDA 135

Query: 191 ------QPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIIT------VE 236
                 +     E L  +G+R S+     V  +   N +  +  +   T +       V 
Sbjct: 136 ATPSAIRDWAMVELLYATGIRVSELTGCDVNDVDFSNRLLRVTGKGNKTRVVPFGGTVVA 195

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA-GVNKSAHGVRKFSAT 295
             + ++++           F+    ++++  Q             G   S HG+R  +AT
Sbjct: 196 ALEKWLEVREDMAKETPALFVGVRGKRIDPRQVRTVVNRVTQAGPGPRLSPHGLRHSAAT 255

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTK 324
              + GA    +    G   +   + YT 
Sbjct: 256 AILEGGADLRVVQELLGHANMSTTQIYTH 284


>gi|149372373|ref|ZP_01891561.1| integrase [unidentified eubacterium SCB49]
 gi|149354763|gb|EDM43326.1| integrase [unidentified eubacterium SCB49]
          Length = 295

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 34/263 (12%), Positives = 93/263 (35%), Gaps = 23/263 (8%)

Query: 85  GSLAVNSRISFESYFDQIIR----KSGDFDYRKITTKHIRSGVE---SRKHTPSSAIQFL 137
            + + ++ +++E   +   +       + D   +    IRS +     +  +  S  + +
Sbjct: 14  RNYSKHTIVAYERDLETFFKFLKTTFSEEDPVNVNYSMIRSWIVCLVEQGISNRSINRKV 73

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS-----QP 192
           +S++  +K+ ++ + +   P    +  K   +   P+ + ++ +  +     +     + 
Sbjct: 74  SSLKTYYKFLLKTKQITATPLAKHKSLKVSKKIQVPFYETEIDEVITLLDHPTDFKTARD 133

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLA----- 246
           +L       +G+R ++     ++ +      +K   K      + L    +K +      
Sbjct: 134 KLIVALFYGTGMRRAELISLKLKDVDLAEGVVKVLGKRNKERLIPLLPSVLKSVDLYLKF 193

Query: 247 ---MTPIGKETFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSAHGVRKFSATISADAG 301
              +  +  +   + N   K+  T            T   V KS H +R   AT   + G
Sbjct: 194 RKEIVVVDSDYLLLTNKGLKIYETLVYRLINGYFSTTSQKVKKSPHILRHSFATHLLNEG 253

Query: 302 ATAHELMATYGWKTVDQAETYTK 324
           A  + +    G  ++   + YT 
Sbjct: 254 ADLNSVKELLGHASLASTQVYTH 276


>gi|288869960|ref|ZP_06112412.2| putative integrase - phage associated [Clostridium hathewayi DSM
           13479]
 gi|288868962|gb|EFD01261.1| putative integrase - phage associated [Clostridium hathewayi DSM
           13479]
          Length = 424

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 50/284 (17%), Positives = 96/284 (33%), Gaps = 29/284 (10%)

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV--ESR 126
           TT K L   +  +   GS+   +  + +     +    GD   + +   HI S      +
Sbjct: 110 TTFKELSELWLTNEKLGSVRDQTISTIKGQLSTVNSYIGDIRIKDLRMSHIESFRSYMIK 169

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
               +     L+ ++ + ++AV+++ +A +    ++R K   +  R  T E+   F+   
Sbjct: 170 SKKLAQYNLCLSRIKAIVRYAVQKDIMAKDITAGMKRVKIDKKPKRALTSEERLLFE-IT 228

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT----------------- 229
              S  R     LLY+GLR  ++    V+ +      I   KT                 
Sbjct: 229 DLDSFERCFINLLLYTGLRKCEALALDVKDIDLKKNQIYVSKTLVASKKINTCLQEYTKT 288

Query: 230 -GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV------ 282
              +  + +P    K+L     G+      +   +  +T    W K       V      
Sbjct: 289 AAGLRQIPIPAPLAKILFEFIKGRSGILFPSKSGRYISTLDYKWEKILKKVQAVSSTPLS 348

Query: 283 -NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
            + + H  R   A+    AG    +     G   +    +TYT 
Sbjct: 349 DDITPHIFRHTYASDLYKAGVDIKQAQYLLGHDDIKTTLDTYTH 392


>gi|153948003|ref|YP_001401908.1| integrase [Yersinia pseudotuberculosis IP 31758]
 gi|152959498|gb|ABS46959.1| integrase [Yersinia pseudotuberculosis IP 31758]
          Length = 312

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 39/271 (14%), Positives = 86/271 (31%), Gaps = 19/271 (7%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH- 128
           T+   +  Y +      L   +   + S  D +           I+TK I + +    + 
Sbjct: 30  TVSDWVKTYTEVLSKRGLKSKTITGYNSRLDVVDEVFASRTIDSISTKDIATLLNDYTNN 89

Query: 129 -TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              +SA    + +   F+ AV +  +  NP  + + PK + +  R      +    +   
Sbjct: 90  GKAASAKLMRSFLTDFFREAVSEGIIYNNPVDATKNPKIEVKRARLSLDNFLSIRAAAAD 149

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE-------LPDG 240
                  + +  + +G R  D  +     ++++   ++ +KTG  I +        L   
Sbjct: 150 MPGWVVDSMDLAIVTGQRVGDVRKMKWSDIKDDKLFVEQEKTGMRIIIPFDVKLDTLLLS 209

Query: 241 FMKLLAM---TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK------SAHGVRK 291
              ++A      I  ET   ++  +       +  F      A +          H +R 
Sbjct: 210 LRDIIARCENRAIKGETIISSDKGESFADKTLTKRFAKARDLANITWEGINPPPFHEIR- 268

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETY 322
             A+   +            G K+    + Y
Sbjct: 269 SLASRLYEKEMGKEFSQKILGHKSAQTTDKY 299


>gi|317125403|ref|YP_004099515.1| tyrosine recombinase XerC subunit [Intrasporangium calvum DSM
           43043]
 gi|315589491|gb|ADU48788.1| tyrosine recombinase XerC subunit [Intrasporangium calvum DSM
           43043]
          Length = 319

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 49/315 (15%), Positives = 105/315 (33%), Gaps = 29/315 (9%)

Query: 51  LTGSTPKREYIN-SPRKKPTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIR---K 105
           +TG+   +E +   P  +P  L+ ++SE+ +        + ++  ++ S  + +      
Sbjct: 1   MTGAGGTQEAVPTQPAPEPAGLEAVLSEFTRHLRSERGRSEHTTRAYVSDINHLFSFVVA 60

Query: 106 SGDFDYRKITTKHIRSGVESRKHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162
            G  D  ++    +RS + ++       S+  +   + R   KWA R   +  +P L + 
Sbjct: 61  HGLSDLGELRLADLRSWLGAQADGGAARSTIARRAAAARTFLKWASRSGRIETDPSLRLV 120

Query: 163 RPKRKTEGIRPWTKEDMQQFKSFW--------SEGSQPRLAFEFLLYSGLRCSDSCRAGV 214
            P+R         + +                    + R   E L  SG+R  +     +
Sbjct: 121 APRRSRTLPDVLKQREASAMLDVAAVRADDADPIHVRDRAVLELLYASGIRVGELVSLDL 180

Query: 215 QHLQNNIFSIKTQKTGT-----IITVELPDGFMKLLAM-----TPIGKETFFINNDKQKM 264
             L     +++    G         V       + LA       P      F+     ++
Sbjct: 181 DDLDLRERTVRVMGKGAKERVVPFGVPAASALQEWLAARRLLVGPRSGPALFLGRRGARV 240

Query: 265 NATQFSIWFKAKA--TKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           +  Q                +   HG+R  +AT   + GA    +    G  ++   + Y
Sbjct: 241 DPRQVRSLVHEVLSHLPDAPDLGPHGLRHSAATHLLEGGADLRMVQEVLGHASLATTQIY 300

Query: 323 TK-GADRIRLGIKNS 336
           T    +R+R   + +
Sbjct: 301 THVSVERLRKSYEQA 315


>gi|315619082|gb|EFU99663.1| integrase [Escherichia coli 3431]
          Length = 231

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 39/216 (18%), Positives = 72/216 (33%), Gaps = 19/216 (8%)

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
             +SA    +++  +F+ A+ + +VA NP  +    K +    R    E ++ + +    
Sbjct: 10  KAASAKLIRSTLVDVFREAIAEGHVATNPVTATRTAKSEVRRSRLTANEYVEIYHAAEPL 69

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP---------- 238
               RLA +  + +G R  D CR     + +N   I+  KTG  + + L           
Sbjct: 70  PIWLRLAMDLAVVTGQRVGDLCRMKWSDINDNHLHIEQSKTGAKLAIPLTLTIDALNISL 129

Query: 239 -DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NKSAHGVRKF 292
            D   K         ET   +     ++    S +F      +G+       + H +R  
Sbjct: 130 ADTLQK--CREASSSETIIASKHYDPLSPKTVSKYFTKARNASGLSFDGNPPTFHELR-S 186

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
            +                 G K+   A  Y     R
Sbjct: 187 LSARLYRNQIGDKFAQRLLGHKSDSMAARYRDSRGR 222


>gi|261207379|ref|ZP_05922066.1| predicted protein [Enterococcus faecium TC 6]
 gi|289566793|ref|ZP_06447205.1| predicted protein [Enterococcus faecium D344SRF]
 gi|260078439|gb|EEW66143.1| predicted protein [Enterococcus faecium TC 6]
 gi|289161420|gb|EFD09308.1| predicted protein [Enterococcus faecium D344SRF]
          Length = 382

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 67/382 (17%), Positives = 136/382 (35%), Gaps = 58/382 (15%)

Query: 14  ERTRHGKIIYYFRK--GHGRRI-RLPYPHESTFI--PAYMSALTGSTPKREYINSPRKKP 68
            + ++G+  +YF+   G      +  Y  +  F       +AL+    + +    P    
Sbjct: 7   YKKKNGEKAWYFKTYLGIDPLTGKKKYTTKRGFRTQKEAKTALSRLELELQKTGMPTSTN 66

Query: 69  TTLK-----WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
           TT K     WL   Y+K+    S +  ++I F  +   I    G+    KI T + +  V
Sbjct: 67  TTFKEAAELWL-ESYKKTVKESSYS-RTKIIFNKH---IYPNFGNIKLSKINTAYCQKVV 121

Query: 124 ESRKHTPSSAIQ--FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW---TKED 178
                  +S     F+  M  +FK+A+     + NP L++  PK + E  +     TKE 
Sbjct: 122 NDWSEKGTSKQYPLFINYMNKVFKYAINIGLTSDNPTLNLIIPKPQIETEKKLKLYTKEQ 181

Query: 179 MQQFKSFWSEGS------QPRLAFEFLLYSGLRCSDSCRAGVQHL--------------- 217
           ++ F +  S+        +    F  L +SG R  +       ++               
Sbjct: 182 LELFLNEVSQEQNPYFKNRDYTLFRLLAFSGCRIGEILALTWDNINFKTNEMAIKKTVAR 241

Query: 218 -------------QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM 264
                        ++N      +KT   +     +    L  +        F N++    
Sbjct: 242 SDKYYISETPKTKKSNRIIYLDEKTIKQLKFWKLEQRKYLFQLGFTKANFLFTNDENNFT 301

Query: 265 NATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETY 322
                +  +     +AG+     HG R   A++  +AGA   E+    G   +    +TY
Sbjct: 302 INQAVAERYNIYRERAGLPYIGLHGFRHTHASMLYEAGADHKEVQERMGHANIKTTMDTY 361

Query: 323 TKGADRIRLGIKNSRRISSVVD 344
           T   +  +   + ++++++ ++
Sbjct: 362 THITNSKK--EETTQKLTNYIN 381


>gi|256752061|ref|ZP_05492929.1| tyrosine recombinase XerD [Thermoanaerobacter ethanolicus CCSD1]
 gi|289578310|ref|YP_003476937.1| tyrosine recombinase XerD [Thermoanaerobacter italicus Ab9]
 gi|256749071|gb|EEU62107.1| tyrosine recombinase XerD [Thermoanaerobacter ethanolicus CCSD1]
 gi|289528023|gb|ADD02375.1| tyrosine recombinase XerD [Thermoanaerobacter italicus Ab9]
          Length = 290

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 29/241 (12%), Positives = 88/241 (36%), Gaps = 13/241 (5%)

Query: 89  VNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWA 147
            +     + + + +       ++ +K T  +    ++ +  + ++  + ++S++  + + 
Sbjct: 25  ESYNRDIKQFLNYLEEIGINYYNVKKSTILNYLYYLKKKGKSQATVSRNVSSLKAFYHYL 84

Query: 148 VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFEFLLYSG 203
             ++ +  +P   +  PK + +     T E +    S       +G + +   E L  +G
Sbjct: 85  FMKKKIEEDPTYMINTPKVEKKPPTALTVEQVDMLLSIDFGNDEKGLRDKALIELLYATG 144

Query: 204 LRCSDSCRAGVQHLQNNIFSIKTQKTGTII------TVELPDGFMKLLAMTPIGKETFFI 257
           L+ S+     ++ +  +   +  +     +       +E    +++       G+ T F+
Sbjct: 145 LKVSEVISLKLEDVNLSYGYVVIRSNKERVIPIGSHAIEALKNYIEKGRKAKNGENTLFL 204

Query: 258 NNDKQKMNATQFSIWFKAKATKA--GVNKSAHGVRKFSATISADAGATAHELMATYGWKT 315
           N   +K+         +    K   G   + + +R+  A      GA    +    G++T
Sbjct: 205 NLRGEKLTRQGCWKIIREYTDKINPGFPVTPNTLRQSFAQHMLQNGADIRAVQEMLGYQT 264

Query: 316 V 316
            
Sbjct: 265 D 265


>gi|210610949|ref|ZP_03288674.1| hypothetical protein CLONEX_00864 [Clostridium nexile DSM 1787]
 gi|210152249|gb|EEA83256.1| hypothetical protein CLONEX_00864 [Clostridium nexile DSM 1787]
          Length = 429

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 52/310 (16%), Positives = 103/310 (33%), Gaps = 40/310 (12%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH 128
           T + L   Y +      L  ++ ++ ++     I+   G     +I    +R        
Sbjct: 70  TFQNLYEIYMEDTA-ARLKQSTLLTKKAVLQTHILPFFGSKPINEIKASDVRRWQAKLMS 128

Query: 129 TPSSA-----IQFLTSMRVLFKWAVRQEYVAINPCLSVERP-KRKTEGIRPWTKEDMQQF 182
           +P++       +  T +  +  +A R   +  NPC       K K E +  WT ++   F
Sbjct: 129 SPNNYSQTYLKKINTELNSIINYAKRFYDLNTNPCGKAGTIGKAKAEEMDYWTYDEYIAF 188

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------------- 229
           +    + S   + FE L ++G+R  +        +  +  +I   +T             
Sbjct: 189 REGVKDKSLSYICFEVLYWTGMREGELLALSPADIDLDNKTISINRTYQRIEGKDVFTSP 248

Query: 230 ---GTIITVELPDGFMKLL------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280
               +   + +PD   + L         P   E  F       +  +  S          
Sbjct: 249 KTRKSKRKIPIPDFLCQELSDYIQSRYMPDADERLF------PVTKSYLSHEMIRGCKNT 302

Query: 281 GVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRR 338
            V K   H +R   A++  + G  A  L    G + V     TY+      +  + +S  
Sbjct: 303 DVKKIRIHDIRHSHASLLINQGCDALMLADRLGHEKVSTTLNTYSHLFPHKQQELVHS-- 360

Query: 339 ISSVVDSDDP 348
           + S+  +D P
Sbjct: 361 LESLQATDSP 370


>gi|167465306|ref|ZP_02330395.1| DNA integration/recombination/invertion protein [Paenibacillus
           larvae subsp. larvae BRL-230010]
          Length = 411

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 47/336 (13%), Positives = 109/336 (32%), Gaps = 60/336 (17%)

Query: 66  KKPTTLKWLISE----YRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHI- 119
            +  TL+  I         S    +L+  +  ++  + + +II   G  +   I T HI 
Sbjct: 72  PQKMTLRQFIESEWDPKYASKT-ENLSPLTYQTYMHFIESRIIPVFGHKNLEDIRTLHIV 130

Query: 120 -----------RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168
                      R        +P +       ++ +F  A   + +  NP + V++PK + 
Sbjct: 131 TFINDLSKPGVRKDRRDDTLSPGTIQYIHRVLKNIFNRATEWQLIKTNPIVGVKKPKVEQ 190

Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS---GLRCSDSCRAGVQHLQNNIFSIK 225
                   ++ +  +   +   +PR    F+L S   G R  +        +  +  ++ 
Sbjct: 191 TEFDF--YDEDEAREVIAALNKEPRRWRLFILGSMVGGFRRGELLALEWADVDFDNMTLS 248

Query: 226 TQK-----------------TGTIITVELPDGFMKLLAM----------------TPIGK 252
             K                   +   V++P+ +M+ L +                    +
Sbjct: 249 INKSISLTVDGRAVEKDPKSKSSKRVVDMPEWYMQELKVHEREWKKEKLFMGDKWLGGDR 308

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATY 311
           +  F     +    T  + W+++  ++  +     H +R  SAT+  +AGA    +    
Sbjct: 309 QYVFHAGYGKPFFHTTPTKWWRSFISRNKLKYIRLHDLRHSSATLLIEAGAPMKAIQKRL 368

Query: 312 GWKT-VDQAETYTKGADRIRLGIKNSRRISSVVDSD 346
           G       A+ Y       ++    + +      ++
Sbjct: 369 GHSKHQTTADIYAHVT--KKVSRDTAEKFDKFAPNN 402


>gi|188585853|ref|YP_001917398.1| integrase family protein [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179350540|gb|ACB84810.1| integrase family protein [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 305

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 42/284 (14%), Positives = 84/284 (29%), Gaps = 33/284 (11%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY---RKITTKHIRSGVES-- 125
           LK+ I ++ +   + +L   +   + +   +      + +      +T  HI+S +    
Sbjct: 3   LKFAIQDFIEDREFKNLTQKTISGYSATLKEFQEFISEQEVVNANDVTQSHIKSYLLHCK 62

Query: 126 --RKHTPSSAIQFLTSMRVLFKWAVRQEYV--AINPCLSVERPKRKTEGIRPWTKEDMQQ 181
             + + P+S    L ++++ F +    E +    NP   +   K   + I  +    ++Q
Sbjct: 63  KNKNNNPTSINHKLHNLKIFFNYLQDIEVISEKQNPAKKINYVKEDIK-IEVFNDYQIKQ 121

Query: 182 FKSFWSE---------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTG 230
              ++             +      FLL +G R  +        +   NN       K  
Sbjct: 122 MLDYYRRIKRREKGFYAYRNYTIIVFLLGTGSRLGELINLRWDDIDFINNTIVF-YGKKR 180

Query: 231 TIITVELPDGFMKLLAMTPI--------GKETFFINNDKQKMNATQFSIWFKAKATK--- 279
              ++ + +   K L               E  F N   +K+        FK        
Sbjct: 181 EYSSIPMTEKLKKELMEYKTYCEQTFESLSEYVFTNRKNEKLTDNAVKCIFKRLKKVMNF 240

Query: 280 AGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
             V  S H  R   A            L      K +     Y 
Sbjct: 241 KNVRVSCHTFRHTFAVNMIKNNCDIFTLQKMLRHKDLSMCRRYV 284


>gi|77359067|ref|YP_338642.1| site-specific recombinase [Pseudoalteromonas haloplanktis TAC125]
 gi|76873978|emb|CAI85199.1| site-specific recombinase [Pseudoalteromonas haloplanktis TAC125]
          Length = 315

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 39/268 (14%), Positives = 94/268 (35%), Gaps = 30/268 (11%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
           +++Y     + +L          YF ++      F  +    +     + S++ +  +  
Sbjct: 38  VNQYVSQLGFAAL----------YFSKLCDDW--FSVQGEHIRRYSMALRSKQLSGRTIS 85

Query: 135 QFLTSMRVLFKWAVRQEYVA----INPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WS 187
             L+ +R L+K+   +         NP + ++ PK      +    + M +         
Sbjct: 86  LKLSCIRSLYKFLKAKNIAKQAHYHNPAVGIKGPKFAKPLPKNLDVDQMARLLEIPDDEP 145

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVEL----PDGFM 242
              + +   E +  SGLR S+   A +Q +      I  +  G     + +     +   
Sbjct: 146 LAIRDKAMMELMYSSGLRISELVGANLQDISAANGEILVRGKGNKERLIPVGSKALNALK 205

Query: 243 KLLAMTP----IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATI 296
           K L + P      +   F+++ K +++  Q  +  +    K G++     H +R   A+ 
Sbjct: 206 KWLIIRPQFANPDEVAVFLSSKKNRISVRQVRLRMQEWGIKQGISSQVHPHKLRHSFASH 265

Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324
             ++      +    G  ++   + YT 
Sbjct: 266 ILESSGDLRAVQELLGHSSLSATQVYTH 293


>gi|121601884|ref|YP_988378.1| tyrosine recombinase XerD [Bartonella bacilliformis KC583]
 gi|120614061|gb|ABM44662.1| tyrosine recombinase XerD [Bartonella bacilliformis KC583]
          Length = 312

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 40/284 (14%), Positives = 96/284 (33%), Gaps = 33/284 (11%)

Query: 74  LISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESRK 127
           +I  + +  +     + ++  +++        K         + +      + S +    
Sbjct: 6   IIDRFLEMMSAERGASAHTLAAYQHDLQWAQDKLSSCSVSLFSARKEDLISLLSLMHKAG 65

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              +S  + L+++R  +++   ++    +P   ++ P++     +  +++ + +   F  
Sbjct: 66  FAATSQARRLSTLRQFYQFLYAEKLREDDPSGDIDAPRQGHPLPKIMSEDVVTKLLDFAQ 125

Query: 188 EGS--------------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233
             +              + ++  E L  +GLR S+     VQ ++     I  +  G   
Sbjct: 126 LETNQAEYGSKNYFRALRLQVLIEMLYATGLRISELVSLPVQTVRGKEQYILVRGKGGKE 185

Query: 234 TVELPDG-----FMKLLAMTPIGKET----FFINNDKQKMNATQFSIW-FKAKATKAGVN 283
            + L          + L +   GK+      F  +      A QF     K  A +AG+ 
Sbjct: 186 RMVLLSAKARQVLSEWLVLRDQGKDATSPYLFPAHSSTGYIARQFIARGLKDLAKRAGIR 245

Query: 284 K---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
               S H +R   A+     GA    +    G   +   + YT 
Sbjct: 246 GDCFSPHVLRHAFASHLLQNGADLRAVQHLLGHCDISTTQIYTH 289


>gi|297570097|ref|YP_003691441.1| integrase family protein [Desulfurivibrio alkaliphilus AHT2]
 gi|296926012|gb|ADH86822.1| integrase family protein [Desulfurivibrio alkaliphilus AHT2]
          Length = 409

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 47/296 (15%), Positives = 104/296 (35%), Gaps = 21/296 (7%)

Query: 45  PAYMSAL----TGSTPKREYINSPRKKPTT--LKWLISEY--RKSAHWGSLAVNSRISFE 96
             Y +A      G+ P   ++    ++  T  L  L+ EY  + +  +       +    
Sbjct: 66  RKYRAAFDLFEQGNDPVAMHLEKKEERRRTPFLSDLVDEYINKHAMRFKRSWAKDQAILN 125

Query: 97  SYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVA 154
                ++   G      I+ + +   +E    + +P  A      +R +F +AV +E + 
Sbjct: 126 R---DVVPAWGQRKAVDISKRDVILLLEKIVDRGSPGMANNCFQIIRKMFNFAVDREILE 182

Query: 155 INPCLSVERPKRKTEGIRPWTKEDMQQF---KSFWSEGSQPRLAFEFLLYSGLRCSDSCR 211
           I+PC  V+ P  K    R  ++E+++             + + A + +L +  R  +   
Sbjct: 183 ISPCTGVKMPAPKMARDRVLSEEEIRVLWSGLERAKISHEVQRAIKLILVTAQRPGEVMG 242

Query: 212 AGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF 269
                ++   ++I     K G    V L D  ++L+     G       + +        
Sbjct: 243 MDFSEIEGRWWTIPADRAKNGKAHRVYLTDTALELIGENTGGFVFPSPRHRENPRPIGSN 302

Query: 270 SIWFKAKATKAGVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           ++    +  K  +     + H +R+ +AT  A+ G     + A      +     Y
Sbjct: 303 AMTVAHRRNKDKIPLEDFTPHDLRRTAATFMAEMGTMDEVIDAILNHSKMGVIRVY 358


>gi|255326180|ref|ZP_05367266.1| tyrosine recombinase XerD [Rothia mucilaginosa ATCC 25296]
 gi|255296634|gb|EET75965.1| tyrosine recombinase XerD [Rothia mucilaginosa ATCC 25296]
          Length = 438

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 76/227 (33%), Gaps = 31/227 (13%)

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
            P+S  + + ++R    + V    V  +P   V  PK      +  + ED+Q+  +    
Sbjct: 191 GPNSIARTMAAVRGAHAFWVSALIVPTDPAAPVTPPKNVKRLPKAVSVEDIQRLLAVPDR 250

Query: 189 ----GSQPRLAFEFLLYSGLRCSDSCRAGVQHL---------QNNIFSIKT-----QKTG 230
               G + R   EFL  +G R S+   A +  +           N  ++        K  
Sbjct: 251 ETATGLRNRAILEFLYATGARVSEMLNADIDDVHFEGTLTDEDGNQITLPGYVRLFGKGN 310

Query: 231 TIITVELPDGFMKLL-----AMTPI------GKETFFINNDKQKMNATQFSIWFKAKATK 279
               V +     K +        P       G    F+N    ++      +  K  A  
Sbjct: 311 KERLVPIGSYAQKAIQDYLVRARPSFVAHGKGTSALFVNGRGGRLGRQGAWLILKEAAEA 370

Query: 280 AGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           AG+  + S H +R   AT     GA    +    G  ++   + YTK
Sbjct: 371 AGLSSDFSPHSMRHSFATHLLQGGADIRVVQELLGHASIATTQVYTK 417


>gi|299137336|ref|ZP_07030518.1| integrase family protein [Acidobacterium sp. MP5ACTX8]
 gi|298600741|gb|EFI56897.1| integrase family protein [Acidobacterium sp. MP5ACTX8]
          Length = 320

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 50/283 (17%), Positives = 91/283 (32%), Gaps = 44/283 (15%)

Query: 85  GSLAVNSRISFESYFDQIIRKSG-----DFDYRKITTKHIRSGVE---SRKHTPSSAIQF 136
              + ++  ++           G     D D R +   HIR+ +     +  T +SA + 
Sbjct: 21  RGASEHTLRAYSREVRGFADFLGELLGEDADIRSVEHTHIRAYLAVLYDKGLTKASAARA 80

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS------ 190
           L ++R  FKW  +  +V  NP   V  PK      R    E++ +  +  S G+      
Sbjct: 81  LAAVRSWFKWLAKSGFVEANPASLVSTPKLPKHLPRVPGMEELNRVLNSMSAGTKGEDGE 140

Query: 191 -------QPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGF 241
                  + R+ FE L   G+R S+     ++  H  ++   +   K      V L D  
Sbjct: 141 EAATWPERDRVIFELLYGCGIRNSELVGLNLESIHWHDDAIRV-FGKGKKERLVPLGDEA 199

Query: 242 MKLLAMTPIGKETFFINNDKQKM------------------NATQFSIWFKAKATKAGVN 283
              +      ++       K K+                           K  A   G+ 
Sbjct: 200 AAAIRAYLPQRQARLEAAGKAKLVHDGALLMNLRMRGACRLTTRSVGRIVKRIALSRGLA 259

Query: 284 KS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
                H +R    T   + GA    +    G + +   + YT+
Sbjct: 260 ADVHPHTLRHAFGTHMLEEGADLRAIQEMLGHERLSTTQRYTQ 302


>gi|330467056|ref|YP_004404799.1| site-specific tyrosine recombinase XerD [Verrucosispora maris
           AB-18-032]
 gi|328810027|gb|AEB44199.1| site-specific tyrosine recombinase XerD [Verrucosispora maris
           AB-18-032]
          Length = 290

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 52/277 (18%), Positives = 89/277 (32%), Gaps = 36/277 (12%)

Query: 90  NSRISFESYFDQIIR----KSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMRV 142
             R   + Y + +              +I     R       H P   SSA +  +++R 
Sbjct: 2   AYRRDLDRYLNSLAAAGVSDLAAVPAGEIERHLARLRAGDDGHPPLAASSAARAASAVRG 61

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----------SEGSQP 192
           L ++A+R+   A +P   V  P       R  + +D+ +                   + 
Sbjct: 62  LHRFALREGLAAADPSRDVRPPTPPRRLPRALSLDDVVRLLDAAGPVQAAGDTAPLALRD 121

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAM---- 247
           R   EFL  +G R S++    V  +   +       K G    V +    M+ L      
Sbjct: 122 RALLEFLYGTGARISETVGLAVDDVDLTDAVVQLRGKGGRDRLVPIGGYAMQALGAYLVR 181

Query: 248 -------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK------SAHGVRKFSA 294
                     G    F+N+    +      +  +  A +A +        S H +R   A
Sbjct: 182 ARPGLVAAGRGTPRVFLNSRGGPLTRQGAWMILRRAAERAALPVDGPQAVSPHTLRHSYA 241

Query: 295 TISADAGATAHELMATYGWKTVDQAETYT-KGADRIR 330
           T   D GA    +    G  +V   + YT    DR+R
Sbjct: 242 THLLDGGADVRVVQELLGHASVTTTQVYTLVTVDRLR 278


>gi|296454352|ref|YP_003661495.1| phage integrase family protein [Bifidobacterium longum subsp.
           longum JDM301]
 gi|296183783|gb|ADH00665.1| phage integrase family protein [Bifidobacterium longum subsp.
           longum JDM301]
          Length = 353

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 51/325 (15%), Positives = 91/325 (28%), Gaps = 78/325 (24%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGV--ESRKHTP 130
             Y KS     L+ N+  ++ +       +    G  D  +IT   +RS +  ESR H  
Sbjct: 14  VSYLKSNR--GLSANTLKAYRADLTACLHLFELRGVTDLNEITLDDLRSWMAVESRDHAR 71

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG- 189
           SS  +   ++R  F WA        +P  ++  P   +      T+   +Q         
Sbjct: 72  SSMARKTVAVRGFFAWAYEHGVTTTDPAATLMTPSIPSTLPAVLTESQAEQLLDVAEHAV 131

Query: 190 ---------------------------------------------------SQPRLAFEF 198
                                                               +     E 
Sbjct: 132 ATNQYKDDGGAAAASGSGSGKAADKSADIVNRSEAPARADKRDNARATAESQRNAAILEL 191

Query: 199 LLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKL----------LA 246
           L  +G+R ++     +  +   N    +  +     +          L          LA
Sbjct: 192 LYATGIRVAELVSMDIADIDFSNRTIKVTGKGNKQRVVPFGLPAQRALETWLEQGRPVLA 251

Query: 247 MTPIGK------ETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISAD 299
            T             F+     +++           A +AGV + S H +R  +AT   D
Sbjct: 252 RTATDAVKSRAANALFLGARGGRIDQRIARDIVHRAAREAGVPDISPHALRHSAATHMLD 311

Query: 300 AGATAHELMATYGWKTVDQAETYTK 324
            GA   E+    G  ++   + YT 
Sbjct: 312 GGADLREVQEMLGHSSLKTTQRYTH 336


>gi|293373142|ref|ZP_06619506.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|292631913|gb|EFF50527.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
          Length = 386

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 49/261 (18%), Positives = 94/261 (36%), Gaps = 18/261 (6%)

Query: 92  RISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFL----TSMRVLFKWA 147
           R+  +    + + K              R+  + + +    A   L     +++ +F  A
Sbjct: 122 RVDKKDILLKDVSKDEICGLFDYMRNKYRNKRQIKTNGGRLADYTLLLFEETVKAIFNKA 181

Query: 148 VRQEYVAINPC---LSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR---LAFEFLLY 201
           +R+  V  NP      +ER     +     T E++ +F +  +E    R   LAF     
Sbjct: 182 MREGLVKFNPVHSLNKLERFHAPDKHREYLTPEELTRFLAVEAECENERTVQLAFGLSSM 241

Query: 202 SGLRCSDSCRAGVQHLQ--NNI--FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI 257
           + LR  D        ++  + +   SI  +KT     + L +    LL           +
Sbjct: 242 TALRLGDMQHLRWCDIKMIDGVPTISIIQRKTKRPAIIPLNEMAQSLLPPRTDDNPESLV 301

Query: 258 NNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKT 315
            +  +K  +   S + +    KAG+ K    H  R  +A+++  AGA    +    G  +
Sbjct: 302 FHLVKK--SDNVSKYVRRLKEKAGIEKDLTYHCSRHTTASLAISAGADISAVKDVLGHGS 359

Query: 316 VDQAETYTKGADRIRLGIKNS 336
           +   E Y K A   ++   N 
Sbjct: 360 ITSTEVYAKVALEKKIEAVNL 380


>gi|227547623|ref|ZP_03977672.1| tyrosine recombinase XerC [Bifidobacterium longum subsp. infantis
           ATCC 55813]
 gi|227211878|gb|EEI79774.1| tyrosine recombinase XerC [Bifidobacterium longum subsp. infantis
           ATCC 55813]
          Length = 355

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 52/327 (15%), Positives = 95/327 (29%), Gaps = 80/327 (24%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGV--ESRKHTP 130
             Y KS     L+VN+  ++ +       +    G  D  +IT   +RS +  ESR H  
Sbjct: 14  VSYLKSNR--GLSVNTLKAYRADLTACLHLFELRGVTDLNEITLDDLRSWMAVESRDHAR 71

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK--SFWSE 188
           SS  +   ++R  F WA        +P  ++  P   +      T+   +Q    +  + 
Sbjct: 72  SSMARKTVAVRGFFAWAYEHGLTTTDPAATLMTPSIPSTLPAVLTESQAEQLLDVAEHAV 131

Query: 189 GS----------------------------------------------------QPRLAF 196
            +                                                    +     
Sbjct: 132 ATNQYKDDGGAAAASGSGKAAGKTADKSADTVNRSEAPARADKRDNARVTAESQRNAAIL 191

Query: 197 EFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKL---------- 244
           E L  +G+R ++     +  +   N    +  +     +          L          
Sbjct: 192 ELLYATGIRVAELVSMDIADIDFSNRTIKVTGKGNKQRVVPFGLPAQRALETWLEQGRPV 251

Query: 245 LAMTPIGK------ETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATIS 297
           LA T             F+     +++           A +AGV + S H +R  +AT  
Sbjct: 252 LARTATDAVKSRAANALFLGARGGRIDQRIARDIVHRAAREAGVPDISPHALRHSAATHI 311

Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324
            D GA   E+    G  ++   + YT 
Sbjct: 312 LDGGADLREVQEMLGHSSLKTTQRYTH 338


>gi|323339878|ref|ZP_08080147.1| tyrosine recombinase XerC [Lactobacillus ruminis ATCC 25644]
 gi|323092751|gb|EFZ35354.1| tyrosine recombinase XerC [Lactobacillus ruminis ATCC 25644]
          Length = 302

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 44/280 (15%), Positives = 92/280 (32%), Gaps = 30/280 (10%)

Query: 73  WL--ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-------FDYRKITTKHIRSGV 123
           WL    +Y K       +  +  S+    ++  R   +        D   I      S +
Sbjct: 8   WLEQFKQYLKVER--QYSEATITSYFEDLNEFCRFLDESGGLKSFKDINNIDVHAYMSWL 65

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-F 182
             R+   ++  + ++S+R  +++ VR +    +P   V   +        + + +M   F
Sbjct: 66  YDRELKTTTVSRKISSLRAFYRFLVRNDKADQDPFAYVSLRRHPRRLPHFFYEREMNALF 125

Query: 183 KSFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELP 238
           ++         +     E L  +G+R S+     +Q +   + SI    K      V+  
Sbjct: 126 QAVCGDDPLTVRDNALLENLYSTGMRVSECVGLKMQDIDFPMRSILVHGKGKKDRYVQFG 185

Query: 239 DGFMKLLAM------TPI------GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS- 285
                 L        TP+        +  F+N+   ++     S        K+ +  + 
Sbjct: 186 SYLDNALKAYFEKMRTPVMEKYQKKHDFVFVNHYGDQLTPAGVSYILDKIVEKSSLTTTI 245

Query: 286 -AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             H +R   AT     GA    +    G  ++   + YT 
Sbjct: 246 HPHELRHTFATHMLANGADLRSVQELLGHSSISTTQIYTH 285


>gi|113866150|ref|YP_724639.1| site-specific tyrosine recombinase XerC [Ralstonia eutropha H16]
 gi|113524926|emb|CAJ91271.1| Site-specific recombinase XerC/Integrase [Ralstonia eutropha H16]
          Length = 359

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 53/320 (16%), Positives = 101/320 (31%), Gaps = 55/320 (17%)

Query: 49  SALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHW----GSLAVNSRISFESYFDQI-- 102
            ++            P  +P     L++ Y     W      LA ++  S+      +  
Sbjct: 8   RSVVADIAPASDGPPPAPEP-----LVTRYL---DWLRGSRKLAEHTLTSYSRDLRVLQG 59

Query: 103 --IRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEY-VAIN 156
              R +       + T HIR+            +S  + L++ R  F+WA R  + V +N
Sbjct: 60  HAARYAPGVALLALQTHHIRNFAARLHGAGLVGTSIARTLSAWRGFFQWAARHGHGVTVN 119

Query: 157 PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS-----QPRLAFEFLLYSGLRCSDSCR 211
           P   V  P+      +  + E      +    G+     + +   E    SGLR S+  +
Sbjct: 120 PVDGVRAPRSGHALPKALSVEHAVALVA-HPAGTDAQALRDQAVHELFYSSGLRLSELVQ 178

Query: 212 A-------------GVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM----------- 247
                         G   L     ++ T K     +V +    ++ L             
Sbjct: 179 LDLRYADADGYRSSGWLDLAGAEVTV-TGKGSRQRSVPVGSKAIEALRAWLAVRDTLLRP 237

Query: 248 --TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGAT 303
              P      F+    ++++     +  K +A +AGV      H +R   AT    +   
Sbjct: 238 GALPEDAHALFLGPRGRRLSMRTVQLRLKQQALRAGVPADVHPHMLRHSFATHVLQSSGD 297

Query: 304 AHELMATYGWKTVDQAETYT 323
              +    G  ++   + YT
Sbjct: 298 LRAVQEMLGHASISTTQVYT 317


>gi|331087780|ref|ZP_08336706.1| hypothetical protein HMPREF1025_00289 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330409761|gb|EGG89197.1| hypothetical protein HMPREF1025_00289 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 400

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 59/369 (15%), Positives = 115/369 (31%), Gaps = 68/369 (18%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEY 78
           G+ I  F    G+R  L     +        A+     + E+  +   +  TL      +
Sbjct: 20  GRYIARFTSKTGKRKTLYDFKLNELKRKLREAVY----EDEHGLNGNGESITLNAWYVTW 75

Query: 79  RKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAI 134
            +     ++ + +     SY++ ++    G    + I T H++  +     +     +  
Sbjct: 76  TELYKKKTVKMTTIYKNHSYYNSRVKNSIGKMYLQDIKTYHVQKFLNDLIDSGLAHGTVS 135

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
                +  +   AV  EY+  NPC+ VE PK   +  R  TKE+ ++F +F S       
Sbjct: 136 NIRFMLSDMLDKAVLSEYIRKNPCIGVEMPKEVKKERRVLTKEEQEKFFTFASSYIHI-N 194

Query: 195 AFEFLLYSGLRCSDSCRAGVQH----------------------LQNNIFSIKTQKT-GT 231
             +F + +G R  +      +                       ++ + F   T KT  +
Sbjct: 195 VLKFAVTTGCRIGEVLGLKWEDCDFEKREIIINKTIHYSKASSPVEGSKFFYTTAKTISS 254

Query: 232 IITVELPDGFMKLLAMTPIGK------------------ETFFINNDKQKMNATQFSIWF 273
              + + D   ++L    I +                     F  +D   +     +   
Sbjct: 255 NRVIPMTDEVYEILQNQKIKQTEQKMWKRSIWKQHKEFQNLVFTCSDGSPVYYYNVNSAI 314

Query: 274 KAKATK--------AGVNK---------SAHGVRKFSATISADAGATAHELMATYGWKTV 316
           K    K        A   K         + H +R   AT   + G     +    G  T+
Sbjct: 315 KDYVAKINVIEIELAKEEKREPKIFELFTCHTLRHTYATRCYENGVDQQVVQKLLGHSTL 374

Query: 317 DQ-AETYTK 324
               + YT 
Sbjct: 375 AMTTDLYTH 383


>gi|295110676|emb|CBL24629.1| Site-specific recombinase XerD [Ruminococcus obeum A2-162]
          Length = 400

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 59/369 (15%), Positives = 115/369 (31%), Gaps = 68/369 (18%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEY 78
           G+ I  F    G+R  L     +        A+     + E+  +   +  TL      +
Sbjct: 20  GRYIARFTSKTGKRKTLYDFKLNELKRKLREAVY----EDEHGLNGNGESITLNAWYVTW 75

Query: 79  RKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAI 134
            +     ++ + +     SY++ ++    G    + I T H++  +     +     +  
Sbjct: 76  TELYKKKTVKMTTIYKNHSYYNSRVKNSIGKMYLQDIKTYHVQKFLNDLIDSGLAHGTVS 135

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
                +  +   AV  EY+  NPC+ VE PK   +  R  TKE+ ++F +F S       
Sbjct: 136 NIRFMLSDMLDKAVLSEYIRKNPCIGVEMPKEVKKERRVLTKEEQEKFFTFASSYIHI-N 194

Query: 195 AFEFLLYSGLRCSDSCRAGVQH----------------------LQNNIFSIKTQKT-GT 231
             +F + +G R  +      +                       ++ + F   T KT  +
Sbjct: 195 VLKFAVTTGCRIGEVLGLKWEDCDFGKREITINKTIHYSKASSPVEGSKFFYTTAKTISS 254

Query: 232 IITVELPDGFMKLLAMTPIGK------------------ETFFINNDKQKMNATQFSIWF 273
              + + D   ++L    I +                     F  +D   +     +   
Sbjct: 255 NRVIPMTDEVYEILQNQKIKQTEQKMWKRSIWRQHKEFQNLVFTCSDGSPVYYYNVNSAI 314

Query: 274 KAKATK--------AGVNK---------SAHGVRKFSATISADAGATAHELMATYGWKTV 316
           K    K        A   K         + H +R   AT   + G     +    G  T+
Sbjct: 315 KDYVAKINVIEIELAKEEKREPKIFELFTCHTLRHTYATRCYENGVDQQVVQKLLGHSTL 374

Query: 317 DQ-AETYTK 324
               + YT 
Sbjct: 375 AMTTDLYTH 383


>gi|289450299|ref|YP_003475200.1| site-specific tyrosine recombinase XerC [Clostridiales genomosp.
           BVAB3 str. UPII9-5]
 gi|289184846|gb|ADC91271.1| site-specific tyrosine recombinase XerC [Clostridiales genomosp.
           BVAB3 str. UPII9-5]
          Length = 366

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 46/260 (17%), Positives = 88/260 (33%), Gaps = 32/260 (12%)

Query: 94  SFESY-FDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLT--SMRVLFKWA-VR 149
            F +   D I     D +   +   +   G  + +   S+A +     ++R  FK+   +
Sbjct: 89  DFRAIPLDDITEA--DLNQIDLKILYSFIGWLANEKKASTANRSRKIATLRSFFKYHHTK 146

Query: 150 QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG-----SQPRLAFEFLLYSGL 204
              +  NP   +E PK+  +  R    E+ +Q     ++       +        L  GL
Sbjct: 147 TRLIKENPAAELESPKQLKKQPRYLEVEESKQLLQTVAQANSNFSQRDYCILTLFLNCGL 206

Query: 205 RCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM-TPIGKE---------- 253
           R ++ C   +  +  +   +   K G   TV L    +  L    P  K+          
Sbjct: 207 RLAELCGINLGDIGEDTLRV-LGKGGKERTVYLNGACIAALNAYLPERKQQKNSFNSAEK 265

Query: 254 -----TFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG-ATA 304
                  FI+    +++     +  +     AG++    + H +R  +AT+    G    
Sbjct: 266 KQAETPLFISRQGNRISHPAVQLLVRKYIILAGLDPHKYTPHKLRHTAATLMYKYGHVDI 325

Query: 305 HELMATYGWKTVDQAETYTK 324
             L    G  +V   E YT 
Sbjct: 326 RMLQQILGHSSVATTEIYTH 345


>gi|325106888|ref|YP_004267956.1| tyrosine recombinase XerD subunit [Planctomyces brasiliensis DSM
           5305]
 gi|324967156|gb|ADY57934.1| tyrosine recombinase XerD subunit [Planctomyces brasiliensis DSM
           5305]
          Length = 315

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 38/262 (14%), Positives = 82/262 (31%), Gaps = 23/262 (8%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH------TPSSAIQFLTS 139
            +A NS  ++    +Q +       +  +    ++      KH        S+  + L +
Sbjct: 37  GMAENSVKAYIRDLEQFLDWLKKKHWHDVRELTLQQLTAYLKHLHDEGLKASTVARKLVA 96

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLA 195
           ++  F++ V +  +  +    +  PK      +  + E +    +  S       + R  
Sbjct: 97  LKTFFRFLVLEGVITDSKAELLNSPKLWQYLPKVLSPEKVDALLTAPSWEDEFPHRDRAI 156

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLLA 246
              L  +G R S+     +  ++ +    K +  G    +          L     +   
Sbjct: 157 LSVLYATGCRASEVTDLTLDQVRLDEGYCKCRGKGNKERIVSLNPVAIAALETYLQRERP 216

Query: 247 MTPIGKE--TFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302
                 E    F++   + ++        K  A + G +   S H +R   AT     GA
Sbjct: 217 ALAARHEQTHLFLSRTGRPLDRLTIWRIVKRYAARIGCSAQVSPHTLRHSFATHMLAGGA 276

Query: 303 TAHELMATYGWKTVDQAETYTK 324
               L    G   +   + YT 
Sbjct: 277 EIRALQEMLGHANIRTTQVYTH 298


>gi|229115620|ref|ZP_04245025.1| Integrase/recombinase [Bacillus cereus Rock1-3]
 gi|228667762|gb|EEL23199.1| Integrase/recombinase [Bacillus cereus Rock1-3]
          Length = 305

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 42/283 (14%), Positives = 97/283 (34%), Gaps = 29/283 (10%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR----KSGDFDYRKITTKHIRSGV--- 123
           L+++I +Y +      LA  +  S+    ++  R    +    +   IT   I+  +   
Sbjct: 4   LRFMIKDYLEDKELSGLAPRTIQSYGDTLNEFSRWLVAEKEIINIEDITPPVIKGYLLYC 63

Query: 124 -ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPWTKEDMQ 180
            + R +T  +    L  ++  F++   ++ +    NP   ++ P +  + I+ ++ E ++
Sbjct: 64  SKERGNTVVTRNGKLQHLKTFFRYLEDEDIIEIRSNPTNKIK-PAKTDKTIKVYSDEQIK 122

Query: 181 QFKSFWS-----EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTG 230
           Q   ++      E +    +       L  +G+R  +        +     +I    K  
Sbjct: 123 QMLRYYRRMRSRENTLYSYRGHTVIVVLAGTGIRLGELVSMRWDSVDLLNKTITIFGKNR 182

Query: 231 TIITVELPDGFMKLLAMTPIGKE--------TFFINNDKQKMNATQFSIWFKAKATKAGV 282
             ++  L D   + L    +  E          F ++    +      + F   + + G 
Sbjct: 183 KSLSTPLTDKVARELYEWRLFCEKYYIKLPAHVFNDHRGNPLTVNAVKLMFTRLSVRMGF 242

Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
             +AH  R   A+    AG   + L        +   E Y   
Sbjct: 243 KTTAHMFRHTYASNCLRAGMDIYTLSKLMHHSQIRTTEVYLHA 285


>gi|311113476|ref|YP_003984698.1| tyrosine recombinase XerC [Rothia dentocariosa ATCC 17931]
 gi|310944970|gb|ADP41264.1| tyrosine recombinase XerC [Rothia dentocariosa ATCC 17931]
          Length = 356

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 53/293 (18%), Positives = 91/293 (31%), Gaps = 34/293 (11%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF---DYRKITTKHIRSGVESRKHTPSS 132
             Y +   +   +  +  S+ S         G         +  + IR  + S     ++
Sbjct: 62  ERYLRYEKYR--SEETIRSYISDLCGFFGFIGRRGISRVEDVNLQLIREWLGSMHLKQNA 119

Query: 133 ---AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
                +  +++R  F WA  +E +  NP   +  PKR        ++E M       +  
Sbjct: 120 KTTVARRGSTLRTFFSWAHEEELITENPTRGMSTPKRDRHLPAVLSQEQMSSVLDTVALR 179

Query: 190 SQP--------RLA--FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELP 238
            +         RL    E L  SG+R S+     +  +     +++   K      V L 
Sbjct: 180 CRENPQDIRMLRLWAVLEVLYSSGMRISELTGLNLSSVDRANKTVRVIGKGNKERVVPLG 239

Query: 239 DGFMK------------LLAMTPIGKETFFINNDKQKMNATQFSIWF-KAKATKAGVNKS 285
              MK             +A         FI    ++ N  Q      +   T      S
Sbjct: 240 TPAMKVLSQWVKIGRPYWIAKGSRDVTALFIGPRGKRANPRQIREDISRILRTLENTEVS 299

Query: 286 -AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
            AH +R  +AT   D GA    +    G  ++   + YT      RL     R
Sbjct: 300 GAHVLRHSAATHLVDGGADIRTVQELLGHASLSTTQIYTH-VSMKRLADTYIR 351


>gi|229144736|ref|ZP_04273135.1| Integrase/recombinase [Bacillus cereus BDRD-ST24]
 gi|228638697|gb|EEK95128.1| Integrase/recombinase [Bacillus cereus BDRD-ST24]
          Length = 305

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 42/283 (14%), Positives = 98/283 (34%), Gaps = 29/283 (10%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR----KSGDFDYRKITTKHIRSGV--- 123
           L+++I +Y +      LA  +  S+    ++  R    +    +   IT + I+  +   
Sbjct: 4   LRFMIKDYLEDKELSGLAPRTIQSYGDTLNEFSRWLVAEKEIINIEDITPQVIKGYLLYC 63

Query: 124 -ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPWTKEDMQ 180
            + R +T  +    L  ++  F++   ++ +    NP   ++ P +  + I+ ++ E ++
Sbjct: 64  SKERGNTVVTRNGKLQHLKTFFRYLEDEDIIEIRSNPTNKIK-PAKTDKAIKVYSDEQIK 122

Query: 181 QFKSFWS-----EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTG 230
           Q   ++      E +    +       L  +G+R  +        +     +I    K  
Sbjct: 123 QMLRYYRRMRSRENTLYSYRGHTIIVALAGTGIRLGELVSMRWDSVDLLNKTITIFGKNR 182

Query: 231 TIITVELPDGFMKLLAMTPIGKE--------TFFINNDKQKMNATQFSIWFKAKATKAGV 282
             ++  L D   + L    +  E          F ++    +      + F   + + G 
Sbjct: 183 KSLSTPLTDKVARELYEWRLFCEKYYIKLPAHVFNDHRGNPLTVNAVKLMFTRLSLRMGF 242

Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
             +AH  R   A+    AG   + L        +   E Y   
Sbjct: 243 KTTAHMFRHTYASNCLRAGMDIYTLSKLMHHSQIRTTEVYLHA 285


>gi|325953803|ref|YP_004237463.1| integrase [Weeksella virosa DSM 16922]
 gi|323436421|gb|ADX66885.1| integrase family protein [Weeksella virosa DSM 16922]
          Length = 355

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 35/263 (13%), Positives = 95/263 (36%), Gaps = 16/263 (6%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----SRKHTPS 131
            ++       S + N+  ++ + F   +    D     +T   +++         K + +
Sbjct: 84  KQFINYLTLKSYSNNTIKTYRTEFLSFLNFFDDVAVENLTPDQLQAYFLVCATQHKLSEA 143

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           +    + +++  ++  ++ E +  +    + RPK+  +  +   ++++    S      +
Sbjct: 144 TINSRMNAVKFYYEKVLKYERMFFD----IPRPKKPLQLPKTLNRKEILLLFSVTD-NLK 198

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLA--- 246
             +  +     GLR S+  +  +  + +   +++    K      V LP   ++ L    
Sbjct: 199 HLMILKLCYGMGLRVSELAKLKIIDIDSQTMTVRIERGKGKKDRFVTLPQSILEDLRLYY 258

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATA 304
           +T       F      +++       FK    KA + K    H +R   AT   + G   
Sbjct: 259 VTYRPSYFLFEGRGGSEISTRTIQKVFKDAMHKAKIQKNVGIHSLRHSYATHLLELGTDI 318

Query: 305 HELMATYGWKTVDQAETYTKGAD 327
             +    G +++    +YT  ++
Sbjct: 319 SHIQKLLGHESIKTTLSYTHVSN 341


>gi|23335386|ref|ZP_00120622.1| COG0582: Integrase [Bifidobacterium longum DJO10A]
 gi|189439114|ref|YP_001954195.1| site-specific tyrosine recombinase XerC [Bifidobacterium longum
           DJO10A]
 gi|317482492|ref|ZP_07941508.1| phage integrase [Bifidobacterium sp. 12_1_47BFAA]
 gi|322689440|ref|YP_004209174.1| tyrosine recombinase [Bifidobacterium longum subsp. infantis 157F]
 gi|254799326|sp|B3DQV1|XERC_BIFLD RecName: Full=Tyrosine recombinase xerC
 gi|189427549|gb|ACD97697.1| Integrase [Bifidobacterium longum DJO10A]
 gi|316916044|gb|EFV37450.1| phage integrase [Bifidobacterium sp. 12_1_47BFAA]
 gi|320460776|dbj|BAJ71396.1| tyrosine recombinase [Bifidobacterium longum subsp. infantis 157F]
          Length = 355

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 51/327 (15%), Positives = 94/327 (28%), Gaps = 80/327 (24%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGV--ESRKHTP 130
             Y KS     L+ N+  ++ +       +    G  D  +IT   +RS +  ESR H  
Sbjct: 14  VSYLKSNR--GLSANTLKAYRADLTACLHLFELRGVTDLNEITLDDLRSWMAVESRDHAR 71

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK--SFWSE 188
           SS  +   ++R  F WA        +P  ++  P   +      T+   +Q    +  + 
Sbjct: 72  SSMARKTVAVRGFFAWAYEHGLTTTDPAATLMTPSIPSTLPAVLTESQAEQLLDVAEHAV 131

Query: 189 GS----------------------------------------------------QPRLAF 196
            +                                                    +     
Sbjct: 132 ATNQYKDDGGAAAAPGSGKAAGKTADKSADTVNRSEAPARADKRDNARVTAESQRNAAIL 191

Query: 197 EFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKL---------- 244
           E L  +G+R ++     +  +   N    +  +     +          L          
Sbjct: 192 ELLYATGIRVAELVSMDIADIDFSNRTIKVTGKGNKQRVVPFGLPAQRALETWLEQGRPV 251

Query: 245 LAMTPIGK------ETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATIS 297
           LA T             F+     +++           A +AGV + S H +R  +AT  
Sbjct: 252 LARTATDAVKSRAANALFLGARGGRIDQRIARDIVHRAAREAGVPDISPHALRHSAATHM 311

Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324
            D GA   E+    G  ++   + YT 
Sbjct: 312 LDGGADLREVQEMLGHSSLKTTQRYTH 338


>gi|297171827|gb|ADI22817.1| integrase [uncultured Oceanospirillales bacterium HF0500_29K23]
 gi|297172180|gb|ADI23160.1| integrase [uncultured gamma proteobacterium HF0770_11A05]
          Length = 383

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 48/271 (17%), Positives = 94/271 (34%), Gaps = 36/271 (13%)

Query: 88  AVNSRISFESYFDQIIRKSG---DFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRV 142
           +  +   + S   + + + G     D   ++ K I    +   +  TPS+A   +  +R 
Sbjct: 98  SEATADRYASLVQRFLARIGAKAKRDIMHLSAKDISKARDEVFKNLTPSTANMMVKVIRT 157

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIR-PWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201
               A+R  ++  N    V   KR  +  R P+   ++++         Q        LY
Sbjct: 158 ALNQALRDGFIDTNEANKVTLIKRHEKANRRPFNMREIRRLLKAADFEWQG--IILCGLY 215

Query: 202 SGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET---FF 256
           +G R +D      ++L   N   + +T+KT   + + L     +     P G +     F
Sbjct: 216 TGQRLTDIALLTWENLDLVNAQLTFQTKKTNRSMALPLAKQLKEYFDKIPAGDDPKAPLF 275

Query: 257 INNDKQKM---NATQFSIWFKAKATKAGV--------------------NKSAHGVRKFS 293
            +   ++    NA   S  F     KAG+                      S H +R  +
Sbjct: 276 PSAYARRTRNNNAGPLSNQFNKVMVKAGLADHKSHQSTGKGRTSKRKLNELSFHCLRHTA 335

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324
            ++  +AG +        G ++   +  YT 
Sbjct: 336 TSMLKNAGVSDAVARDIIGHESEAISRQYTH 366


>gi|13541094|ref|NP_110782.1| integrase/recombinase [Thermoplasma volcanium GSS1]
 gi|14324479|dbj|BAB59407.1| integrase / recombinase [Thermoplasma volcanium GSS1]
          Length = 283

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 40/253 (15%), Positives = 92/253 (36%), Gaps = 20/253 (7%)

Query: 91  SRISFESYFDQIIRKSGDFD--YRKITTKHIRSGVESRKHTPSSAIQF-LTSMRVLFKWA 147
           +   ++    + +   G        +  +  ++ + S+ H   ++    + ++++ +K +
Sbjct: 25  TIKEYKFLVSKFLAFVGKTPAEVTPMDIERYKTFLASKAHYSKASQYLAIKAIKLFYK-S 83

Query: 148 VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCS 207
           +   Y    P  ++  P+R         +E+  +  S   +  +       L Y+G+R  
Sbjct: 84  LDLRY----PV-NLTPPRRSMHMPVYLNEEEASRLLSASKKSVKYSAVISVLAYTGIRVG 138

Query: 208 DSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLA-------MTPIGKETFFIN 258
           + C   +  +     I  +K+ K      V +P+  +  L              +  FI+
Sbjct: 139 ELCNLRIGDVDMQEGIIYVKSGKGDKDRIVVMPNECVSALKEYLNWRISVETPHDFLFIS 198

Query: 259 NDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTV 316
           N K + + +      K  + +AG+NK  + H +R   AT     G     +    G  +V
Sbjct: 199 NKKSRYDPSTVERMVKRLSQEAGINKRVTPHVLRHTFATSVLRNGGDIRFIQQILGHSSV 258

Query: 317 DQAETYTKGADRI 329
              + YT   D  
Sbjct: 259 ATTQIYTHLDDNA 271


>gi|291287002|ref|YP_003503818.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809]
 gi|290884162|gb|ADD67862.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809]
          Length = 410

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 53/307 (17%), Positives = 101/307 (32%), Gaps = 28/307 (9%)

Query: 48  MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAH----WGSLAVNSRISFESYFDQII 103
            +    ++ K    NS RK   T   +  E+++        G L   +  ++ +    I+
Sbjct: 63  YAEWFPNSKKCRLFNSVRKSHKTFAEVAEEWKEHVERLHKAGELKRTTLRNYMNSLKSIL 122

Query: 104 RKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
                ++ + IT   +          P    S    LT +R +F +A    Y+  N    
Sbjct: 123 DYFAIYEMQNITKSLVDDYKFELLDKPLSKKSINNKLTPLRRIFDYAYEMGYIEHNVMDR 182

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQN 219
           V+    +   I P+ + ++Q   +   + +      F  L ++G+R  +      ++   
Sbjct: 183 VKNFTLELPEIEPFNQLEVQAILNHLQKNNPKFHAMFTILFHTGMRIGEVLAMKWKNFDE 242

Query: 220 NIFSIKTQ-----------KTG-TIITVELPDGFMKLLAM----TPIGKETFFINNDKQK 263
              S   +           KT  +   V L D  MK L      T +  +  F N     
Sbjct: 243 MFCSYHVKEHFTEKRLDTPKTKASKRIVPLTDEAMKALRNHKQYTFMKSDFIFCNQYGDP 302

Query: 264 MNATQ--FSIWFKAKATKAGVNKS-AHGVRKFSATISADAGATAHELMATYGWKTVDQ-A 319
             ++       ++    K G+     +  R   A++S  AG     +    G K V    
Sbjct: 303 WVSSDNIMKQVWEPMLKKLGIAYRIIYQCRHTHASLSILAGDNLAHIAERMGHKNVGTLI 362

Query: 320 ETYTKGA 326
             Y K  
Sbjct: 363 TRYAKYV 369


>gi|146297219|ref|YP_001180990.1| phage integrase family protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145410795|gb|ABP67799.1| phage integrase family protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 360

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 60/350 (17%), Positives = 114/350 (32%), Gaps = 46/350 (13%)

Query: 28  GHGRRIRLPYPHEST-FIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGS 86
           G+G+RIR     +       Y+  +  +  K   +N        L   + EY K+     
Sbjct: 24  GNGKRIRKYKTFDKESEAKKYLIQMLANEGKFIPLNEF------LDRWLEEYAKNY---- 73

Query: 87  LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA--IQFLTSMRVLF 144
           +A  + I ++     + +       +++ T  ++        T S A   +  + +    
Sbjct: 74  VAPKTYIKYKDSLKHVRKAFPSHTLQQLNTFELQKFFNQLSQTLSQASVRKIYSVLNNAL 133

Query: 145 KWAVRQEYVAINPCLSVERP-KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203
           K A++   +  NP   V+ P K + + I+ W  E +++F     +  +   A    L++G
Sbjct: 134 KTAIKWNMLKENPLEFVKLPQKYEEKKIKVWDIETVKKFLEDIKD-EKIHTAVTLALHAG 192

Query: 204 LRCSDSCRAGVQHLQ--NNIFSIKT--QKTGTIITVELPDG-----------------FM 242
           LR  + C     ++        IK   QK G  I ++ P                     
Sbjct: 193 LRAGEICGLTWDNVDFEKKCIHIKQALQKIGKEIIIKPPKSKTSIRTIYMTSYLYETLLE 252

Query: 243 KLLAMTPIGKET------FFINNDKQKMNATQFSIWFKAKATKAG-VNKSAHGVRKFSAT 295
           +     P+ +          I+          F+  FK   +  G      H +R   AT
Sbjct: 253 EYKRQEPLREAYKKLGNFVCIHETGNPFCPDYFTHTFKKLVSCLGYPEIRFHDLRHTFAT 312

Query: 296 ISADAGATAHELMATYGWKTVDQ-AETYTKGADRIRLGIKNSRRISSVVD 344
           I   A           G          Y    D  +  IK + +I  ++ 
Sbjct: 313 ILLQAQTNPKIAAEILGHSNTKLFLNLYAHVLDEQK--IKATHKIEEILG 360


>gi|302874512|ref|YP_003843145.1| integrase family protein [Clostridium cellulovorans 743B]
 gi|307690879|ref|ZP_07633325.1| site-specific tyrosine recombinase XerC [Clostridium cellulovorans
           743B]
 gi|302577369|gb|ADL51381.1| integrase family protein [Clostridium cellulovorans 743B]
          Length = 311

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 42/284 (14%), Positives = 95/284 (33%), Gaps = 34/284 (11%)

Query: 74  LISEYRKS-AHWGSLAVNSRISFE----SYFDQIIR----KSGDFDYRKITTKHIRSG-- 122
           L+ +Y    +   + + N+ + +      +F  I++       D ++ +I  + I+S   
Sbjct: 9   LVEQYLGYLSIIKNRSENTILEYRIDLLMFFSYILKSRSITVADSNFAQIDLEFIKSINL 68

Query: 123 ----------VESRKHTPSSAIQFLTSMRVLFKWAVRQEY-VAINPCLSVERPKRKTEGI 171
                      ++   +  +  + + S+R  +K+   + + +  N    +E PK      
Sbjct: 69  NDMYSFISYCQKTLNSSAGTRARKIVSIRQFWKYLKTKAHVIDNNIAEELETPKLPKRIP 128

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
           +    E   +      +  +        L   LR S+     +  + N+  S+   K   
Sbjct: 129 KYLNLEKSFRLLMECKKSIRDHCIITIFLNCALRLSELASLNIDQVNNDTLSV-VGKGNK 187

Query: 232 IITVELPDGFMKLLAMTP-------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN- 283
              + L     K +           +     FI+ +  ++         K     +G++ 
Sbjct: 188 ERKIFLTPAAKKAINNWLHIRNSINVDTNALFISRNSNRITTRAIQNIIKKYVLSSGLDS 247

Query: 284 --KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTK 324
              S H +R  +AT+    G      L    G ++V   E YT 
Sbjct: 248 KSISTHKLRHTAATLMYKYGRVDIRSLQQILGHESVATTEIYTH 291


>gi|259907778|ref|YP_002648134.1| site-specific tyrosine recombinase XerC [Erwinia pyrifoliae Ep1/96]
 gi|259909773|ref|YP_002650129.1| site-specific tyrosine recombinase XerC [Erwinia pyrifoliae Ep1/96]
 gi|259909780|ref|YP_002650136.1| site-specific tyrosine recombinase XerC [Erwinia pyrifoliae Ep1/96]
 gi|224963400|emb|CAX54888.1| integrase [Erwinia pyrifoliae Ep1/96]
 gi|224965395|emb|CAX56927.1| site-specific tyrosine recombinase [Erwinia pyrifoliae Ep1/96]
 gi|224965402|emb|CAX56934.1| site-specific tyrosine recombinase [Erwinia pyrifoliae Ep1/96]
 gi|283477639|emb|CAY73555.1| Tyrosine recombinase xerD [Erwinia pyrifoliae DSM 12163]
 gi|283479866|emb|CAY75782.1| Tyrosine recombinase xerD [Erwinia pyrifoliae DSM 12163]
 gi|283479875|emb|CAY75791.1| Tyrosine recombinase xerD [Erwinia pyrifoliae DSM 12163]
          Length = 356

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 42/289 (14%), Positives = 99/289 (34%), Gaps = 32/289 (11%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQI--------IRKSGDFDYRKITT-KHIR 120
           TL+ L   +         +  +   +               IR +       + + +   
Sbjct: 20  TLRRLAESWLAHLAAAGRSPRTVQGYRERVLAFLAWCEPRGIRYAPQVSLAVLESYQRYL 79

Query: 121 SGVESRKHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI-RPWTK 176
            G      T  +       L+++R+L +W +++ ++  NP   +  PK +     + +++
Sbjct: 80  RGYRKADGTLLAVNGQRHLLSAIRMLLRWLLQRHHILYNPAELLALPKEERRLPAQVFSE 139

Query: 177 ED----MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTG 230
            +    +Q   +    G + R   E L  +G+R ++     +  +     + +++  K G
Sbjct: 140 AETRRVLQSLDAGTPPGLRNRAILELLWSTGIRRTELANLLLSDVDAVRGVVNVRRGKGG 199

Query: 231 TIITVEL----PDGFMKLLA------MTPIGKETFFINNDKQKMNATQFSIWF-KAKATK 279
               V +         + L                FI++    +  +  +    +A    
Sbjct: 200 RDRVVPVGHTALIWLGRYLKDVRPRLAQRFDSGHLFISHKGTGLGRSTLTAMAGRAIREG 259

Query: 280 AGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           A + K+   H  R   AT   + GA    + A  G + ++  + YT+ A
Sbjct: 260 AHLKKAGACHIFRHSMATQMLENGADTRHIQAILGHEKLETTQIYTRVA 308


>gi|324115014|gb|EGC08979.1| phage integrase [Escherichia fergusonii B253]
          Length = 395

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 58/287 (20%), Positives = 110/287 (38%), Gaps = 13/287 (4%)

Query: 48  MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG 107
            S  TG+ PK+E  N  ++   T   L ++Y       S   +     + Y D I    G
Sbjct: 87  RSLATGTDPKQEREN--KRMELTFDELFNQYYL-PWAKSAKRSWGKDVQRYRDHIRPAIG 143

Query: 108 DFDYRKITTKHIRSGVESRKHTPSSA--IQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165
                 IT   I    ++   + S+A   + +  ++ +F WA RQ   +++P   V+  +
Sbjct: 144 QRLLSDITPASILRLQQTLSTSLSAATCNRVIVLIKAVFTWAGRQSMTSVHPARVVQLLR 203

Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF--EFLLYSGLRCSDSCRAGVQHLQ--NNI 221
                 R +T++++++        + P  A   + LL +GLR  +   A  +H+      
Sbjct: 204 ENNARQRYFTEDEIRRIFLSADNDTSPVAARYVKLLLLTGLRRDELRLAKWEHVDPVKRT 263

Query: 222 FSIKTQKTGTIITVELPDGFMKLLAMTPIGK-ETFFINNDKQKMNATQFSIWFKAKATKA 280
             +   K G    V L    M ++   P  +   +     KQ M  +     F+    +A
Sbjct: 264 LWLPETKNGYGRIVHLNSLAMDVIRTLPTQRGNPWLFIGKKQGMPLSNPVKAFQRIVRRA 323

Query: 281 GV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           G+       H  R   A +    G T +++ A  G ++   ++ Y  
Sbjct: 324 GIFDKEVCIHTCRHSVAALIVSYGGTLYDVQAQLGHRSSQSSQRYAH 370


>gi|295108956|emb|CBL22909.1| Site-specific recombinase XerD [Ruminococcus obeum A2-162]
          Length = 363

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 55/317 (17%), Positives = 104/317 (32%), Gaps = 30/317 (9%)

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYR 112
              + + ++S R     L   I  Y  S     L   +  +        I+   G+    
Sbjct: 40  EFERSKKLSSERSMDMKLSDFIEIYF-SDKQNDLKDRTIKNKRYMMQQHIVPYFGNQMMS 98

Query: 113 KITTKHIRSGVESRKHTPSSAIQFL---TSMRVLFKWAVRQEYVAINPCLSVER-PKRKT 168
           +I    I       +    S          +  LF  A +   + +NPC  V+R     +
Sbjct: 99  EIKASQIIQWQNEIQKKGYSDSYLRMIQNQLTSLFTHAAKIYDLPVNPCKKVKRMGNSDS 158

Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----------- 217
             +  WT ++ +QF      G++  L FE L ++G R  +        +           
Sbjct: 159 RSLNFWTLDEYKQFIQTMEPGTRYYLMFEMLFWTGCRIGELLAITKADINFEKNQLSINK 218

Query: 218 ---QNNIFSIKTQ-KTG-TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW 272
              +  +  I T+ KT  +  T+E+P+   + +     G            +        
Sbjct: 219 TYYRTGMQDIITEPKTKQSFRTIEIPEFLKEEIKEFVDGHYGMPDTERLFPVVQEAVQHK 278

Query: 273 FKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIR 330
            K +   AGV K   H +R        + G     +    G K +     TY        
Sbjct: 279 MKRQIELAGVKKIRVHDIRHSHVAYLIEKGVEPLLIRDRLGHKDIRITLNTYGH------ 332

Query: 331 LGIKNSRRISSVVDSDD 347
           L     R+I++++D+++
Sbjct: 333 LYPNQQRKIANLLDNEN 349


>gi|218667294|ref|YP_002425983.1| site-specific recombinase, phage integrase family
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|218519507|gb|ACK80093.1| site-specific recombinase, phage integrase family
           [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 331

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 54/305 (17%), Positives = 98/305 (32%), Gaps = 31/305 (10%)

Query: 29  HGRRIRLPYPHESTFIPA------YMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSA 82
            GRR+    P  S+   A        + LT + P  E    P      L  ++  Y K  
Sbjct: 18  DGRRLHRILPAGSSARDAKQVEARLRAELTSARPLPERAGDPP-----LAAVMPLYLKHL 72

Query: 83  HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRV 142
                +  +     +     + +    +  K     IR    +    P++  + L +++ 
Sbjct: 73  E-HLRSPETARFHAARITPWLAQYTASEAPKCAAMIIRDMTGAYA--PATINRSLGALKK 129

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202
               A  QE    N    ++R     E     T E + +  S  S+     +     L++
Sbjct: 130 ALTLAWEQELTPENYGARIKRLPEHNERHIYLTLEQVNELASHASDPVAAAIW--IALFT 187

Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQ--KTGTIITVELPDGFMKLLAMTPIGKETFFINND 260
           G R  +  +   + +     +I+    KT    TV +       L   P+          
Sbjct: 188 GCRRGEITKLKAEDVGETTITIRAGNTKTLKTRTVPIIGPMRLWLPFIPL---------- 237

Query: 261 KQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
              +NA      F+    KAG+     H +R   A+I   +GA  + +    G  +    
Sbjct: 238 --PINAEGLKSGFRRAREKAGLPHLHFHDLRHSCASILLASGADLYTISRILGHSSTKMT 295

Query: 320 ETYTK 324
           E Y  
Sbjct: 296 ERYAH 300


>gi|209693751|ref|YP_002261679.1| site-specific tyrosine recombinase XerC [Aliivibrio salmonicida
           LFI1238]
 gi|208007702|emb|CAQ77813.1| tyrosine recombinase XerC [Aliivibrio salmonicida LFI1238]
          Length = 303

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 40/261 (15%), Positives = 81/261 (31%), Gaps = 22/261 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV------ESRKHTPSSAIQFLT 138
             L++ ++ +++     I  +  +                            SS    L+
Sbjct: 24  KGLSIYTQRNYKRQLTTIAEQLIELGVDSWQDVDAGWVRQITSKGMRSGLKASSLSTRLS 83

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WSEGSQPRLA 195
           S+R  F + V +  +  NP   V  P++     +    ++M Q            + R  
Sbjct: 84  SLRSFFDFLVLRNVLQANPAKGVSAPRKSRPLPKNIDVDEMGQLLEVNEDDPLSIRDRAM 143

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLL--------- 245
            E +  +GLR ++     V+ +Q     ++   K      V       + L         
Sbjct: 144 MELMYGAGLRLAELVGIDVRDIQLRQGELRVIGKGDKERKVPFSGKAKEWLGHWLQVRNQ 203

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGAT 303
              P  K   F++    +++             K GVN   S H +R   AT   ++   
Sbjct: 204 LANPEEKG-LFVSKLGVRISHRNVQKRMAEWGMKQGVNSHISPHKLRHSFATHMLESSGN 262

Query: 304 AHELMATYGWKTVDQAETYTK 324
              +    G + +   + YT 
Sbjct: 263 LRAVQELLGHENISTTQIYTH 283


>gi|220917358|ref|YP_002492662.1| tyrosine recombinase XerD [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219955212|gb|ACL65596.1| tyrosine recombinase XerD [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 298

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 39/267 (14%), Positives = 81/267 (30%), Gaps = 24/267 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRKHTPSSAIQFLT 138
             LA NS  ++     + +    +              +   + +  R  +P S  + L+
Sbjct: 19  KGLAENSVEAYGRDLRRYLEHLDELGVDAWERVGRGEIQAHLAELVRRGLSPRSQARALS 78

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FWSEGSQPRL 194
           ++R L +    +     +P   +E P+         + +++ +  +      + G + R 
Sbjct: 79  AIRSLHRLLAAERVTPADPSDEIESPRPGRRLPGLLSHDEVDRLLAAPDVRSAAGIRDRA 138

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP----- 249
             E L  +GLR S+     +  +      +  +  G    +                   
Sbjct: 139 MLELLYATGLRVSELVSLQLNDVNLETRVLVARGKGNKERIVPVGAPAAAAVKAYLAVAR 198

Query: 250 ------IGKETFFINNDKQKMNATQFSIWF--KAKATKAGVNKSAHGVRKFSATISADAG 301
                    +  F+     +M    F+      A+        S H +R   AT   + G
Sbjct: 199 ERLLHGRRSKDLFVTPRGGRMTRQGFAKILDRCARRAGIRRRISPHKLRHSFATHLLEGG 258

Query: 302 ATAHELMATYGWKTVDQAETYTKGADR 328
           A    +    G   V   + YT   DR
Sbjct: 259 ADLRAVQEMLGHADVSTTQIYTH-VDR 284


>gi|118592747|ref|ZP_01550137.1| Integrase [Stappia aggregata IAM 12614]
 gi|118434798|gb|EAV41449.1| Integrase [Stappia aggregata IAM 12614]
          Length = 287

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 36/250 (14%), Positives = 83/250 (33%), Gaps = 15/250 (6%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRK--ITTKHIRSGVESRKHTPSSAIQFLTSMRV 142
            +L+  ++ S+     +  R  G    R      +  +  + +   +  +  Q + ++R 
Sbjct: 19  RNLSPATQRSYLHAVSKFSRYFGRSPDRLGLEDVRAFQVHLVATGISWPALNQTVCALRF 78

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202
            +   + Q  +       +   +   +     + +++ +F        + R A      +
Sbjct: 79  FYGVTLGQAEIP----ERIAYARAPRKLPEVLSADEVVRFLEAVPS-LKTRTALTAAYAA 133

Query: 203 GLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLA---MTPIGKETFFI 257
           GLR S+     V  +     +  I+  K G    V L    + +L          +  F 
Sbjct: 134 GLRVSEVVGLKVADIDSQRGVIRIRHGKGGKDRYVMLSAQLLHILRTYWRLARPPDWLFP 193

Query: 258 NNDK-QKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWK 314
             +    ++ T      ++    AG++K  + H +R   AT   + G     +    G  
Sbjct: 194 RRNGSGPISITVLHAACRSARAAAGIDKRVTVHTLRHSFATHLLENGTDIRIIQVLLGHN 253

Query: 315 TVDQAETYTK 324
            +     YTK
Sbjct: 254 NLSSTARYTK 263


>gi|307720074|ref|YP_003891214.1| integrase family protein [Sulfurimonas autotrophica DSM 16294]
 gi|306978167|gb|ADN08202.1| integrase family protein [Sulfurimonas autotrophica DSM 16294]
          Length = 389

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 54/328 (16%), Positives = 115/328 (35%), Gaps = 31/328 (9%)

Query: 23  YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKR----EYINSPRKKPTTLKWLISEY 78
           +YFR    +            + A   A+      +    E     +K   TL     EY
Sbjct: 53  FYFRNKQKKETVSYNNIT--GLQAIKKAIATRAELKVEIEETGIIKKKDFKTLSEYWDEY 110

Query: 79  --RKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVES--RKHTP--- 130
              KS+ W   + +++++  +++D  I  + G+ ++ K+TT+ ++  V    R   P   
Sbjct: 111 VFYKSSIW---SPDTKVTNTTFYDKWIREQIGEINFEKVTTRDLQDIVNLILRSSNPKTK 167

Query: 131 -----SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-FKS 184
                 +A      +R L+ + ++     INP +++E PK         + ++ ++ F++
Sbjct: 168 KPYATRTAQSVKQQIRALYNYFIKSNITKINPAINIEIPKFDNTIDFELSDDERKKLFEA 227

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT----QKTGTIITVELPDG 240
             +            LYSG R ++      +++  +  +        K    +   +P  
Sbjct: 228 INNYELAKFKGVMLFLYSGRRLNEVLTLDWRNIHFHKKTYTIDSIYAKNRRTLEFPIPPV 287

Query: 241 FMKLLAMTPIGKETFFINNDK---QKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATI 296
               L      K        K   + ++   F   +K    +  ++K   H  R      
Sbjct: 288 LEDFLLSYHPKKTGLIFVAQKDPNKPLSQETFRRHWKIVIDRLDIDKMRIHDTRHLLGNT 347

Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324
             + G +   +  T G  +V     Y K
Sbjct: 348 MINKGFSLEAVGKTMGHSSVHVTTRYAK 375


>gi|126737207|ref|ZP_01752942.1| tyrosine recombinase [Roseobacter sp. SK209-2-6]
 gi|126721792|gb|EBA18495.1| tyrosine recombinase [Roseobacter sp. SK209-2-6]
          Length = 328

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 43/236 (18%), Positives = 76/236 (32%), Gaps = 19/236 (8%)

Query: 107 GDFDYRKITTKHIRSGVESRKHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163
           G      I T  +R+ +   + +   P S  + L++++  ++W   +E       L+   
Sbjct: 75  GLKALADIKTADMRAWMAQERGSGTGPRSLARRLSAVKSFYRWLAEREGFEPTAVLAARA 134

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWS-------EGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216
           PK + +  RP  +E  +               G++       L   GLR S++       
Sbjct: 135 PKFQKKLPRPLAEEAAKAVLERVEQQSETDWIGARDLAVVTLLYGCGLRISEALGLKGGD 194

Query: 217 LQNNIFSIKTQKTGTIITVELPDGFMKL----LAMTPIGKE---TFFINNDKQKMNATQF 269
                      K G    V + D         LA+ P   E     F       +N  Q 
Sbjct: 195 APLPASLRILGKGGKERLVPVLDAARDAVDHYLALCPHSAEKETPLFRGVRGGALNPRQI 254

Query: 270 SIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
                    + G+  SA  H +R   AT   +AG     +    G  ++   + Y 
Sbjct: 255 QSTMAKVRAQLGLPASATPHALRHSFATHLLEAGGDLRAIQELLGHASLSTTQAYA 310


>gi|320108932|ref|YP_004184522.1| integrase family protein [Terriglobus saanensis SP1PR4]
 gi|319927453|gb|ADV84528.1| integrase family protein [Terriglobus saanensis SP1PR4]
          Length = 373

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 46/299 (15%), Positives = 107/299 (35%), Gaps = 32/299 (10%)

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK 113
           +  +  +++  ++    +  LI  Y    H+GS   ++    +S  + I  + G    R+
Sbjct: 42  NRDENRHLDVKKEINYKMSDLIDRYWT--HYGSKKASADRE-KSIVEGIRSELGRKFVRE 98

Query: 114 ITTKHIRSGVESRKHTP----SSAIQFLTSMRVLFK-----WAVRQEYVAINPCLSVERP 164
           +    ++   E+         ++A++    M  + +     WA     +  NP   +E  
Sbjct: 99  VDGIAVQHWYENLTGKRGLADNTAVRHFNVMHHMMEKASTIWAPETG-IDRNPASLIEVR 157

Query: 165 KRKTEGIRPWTKEDMQQFKSFWSE-------------GSQPRLAFEFLLYSGLRCSDSCR 211
           +      R  ++E++Q+ K+   E               + RL     + +G+R ++  R
Sbjct: 158 RPDDTRERYLSEEELQRMKTALDERILRKGTKDPNQTNRRMRLIVLIAVSTGMRSAEIHR 217

Query: 212 AGVQHLQ--NNIFSIKTQ-KTGTIITVELPDGFMKLLAMTPI--GKETFFINNDKQKMNA 266
                ++    + +++ + K G    V +     + +   P   G++  F          
Sbjct: 218 LRWTDVRYGERLLAVRAKLKKGKERFVPMTSELAEEIRRYPTVIGQDRIFPPKGGPASKR 277

Query: 267 TQFSIWFKAKATKAGVNKSA-HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            +    F+    +A ++    H +R   A+     G   +EL    G   +   E Y K
Sbjct: 278 QRLEGSFEDLLERANIHDFWFHDLRHTFASWYMMNGGDLYELAKLMGHANIKMTERYAK 336


>gi|134098863|ref|YP_001104524.1| integrase/recombinase [Saccharopolyspora erythraea NRRL 2338]
 gi|291005779|ref|ZP_06563752.1| integrase/recombinase [Saccharopolyspora erythraea NRRL 2338]
 gi|133911486|emb|CAM01599.1| integrase/recombinase [Saccharopolyspora erythraea NRRL 2338]
          Length = 329

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 54/317 (17%), Positives = 113/317 (35%), Gaps = 45/317 (14%)

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII--------RKSGDFDYRKIT 115
           PR++  +L   I  Y +      LA NS  ++      +         R + +    ++T
Sbjct: 2   PRQEDASLAHWIEVYLEHLQARKLAANSLRAYRLDLTAVAGELAELTGRGTAELPVDELT 61

Query: 116 TK--HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
           T          +   + SS  +  ++    F + V +  V  NP   + +P+      +P
Sbjct: 62  TSVLRSAFARHAAARSASSVTRTWSTWNGFFGFLVVEGVVGGNPMQVIPKPRTAPATPKP 121

Query: 174 WTKED------------MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221
              ED            +++ ++ W E  +       LL +G+R ++     V  L    
Sbjct: 122 LQGEDTPERLLRTVSAGVRRARNPWPE--RDLAVLATLLCTGVRSAELLDLKVGSLAGRA 179

Query: 222 FSIK---TQKTGTIITVELPDGFMKLLAM-----------TPIGKETFFINNDKQKMNAT 267
              +     K G   ++ + D    ++                G +  F+++ ++ +   
Sbjct: 180 GDRRLHVRGKGGKNRSIPIEDALDSVIQNYLETRRARFGERLPGSDPLFVDHREEPLRRG 239

Query: 268 QFSIWFKAKATKAGV------NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
                 +     AG+          H +R   AT  A+ GA+A E+    G  +++ ++T
Sbjct: 240 GLQYLVRQSLRAAGMSDRVQRGAMVHALRHTFATRLAEDGASAAEIAKLLGHASINSSQT 299

Query: 322 YTK-GADRIRLGIKNSR 337
           Y    A   RL ++ +R
Sbjct: 300 YIDVTAREQRLSVRANR 316


>gi|222530398|ref|YP_002574280.1| integrase family protein [Caldicellulosiruptor bescii DSM 6725]
 gi|222457245|gb|ACM61507.1| integrase family protein [Caldicellulosiruptor bescii DSM 6725]
          Length = 283

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 34/261 (13%), Positives = 86/261 (32%), Gaps = 34/261 (13%)

Query: 89  VNSRISFESYFDQIIRKSGDFDYRKIT-------TKHIRSGVES-RKHTPSSAIQFLTSM 140
            ++  ++    +  ++   +   R+          ++ RS + + +K    +    L+++
Sbjct: 15  ESTAKTYIRAVENFLKWYQESYDREFDGKVLPLHIRNYRSYLMTVKKLNAKTINNNLSAI 74

Query: 141 RVLFKWAVRQEYVAINPCL----------SVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           +    + V +  +  NP L           V   K + +      +  +          +
Sbjct: 75  KSYCDFLVEKGLIETNPVLDDYFIDVQEPGVSPAKLENKDFNKLEEAVV------HYGSA 128

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250
           +    F  L Y+G+R S+ C   +  +  +   I   K G    + L     + +     
Sbjct: 129 RDIAIFYTLAYTGVRVSELCNIRLNDIVKDELIIYYGKGGKQRKIPLNRTVREAIDNWLK 188

Query: 251 GK--------ETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAG 301
            +        +  FI+   + ++ +      K     A +     H +R +    + + G
Sbjct: 189 ERGKYKYSHLDYLFISERGK-LDRSTVYRIIKEYCRIAKIEPIGPHQLRHYFCKRALEKG 247

Query: 302 ATAHELMATYGWKTVDQAETY 322
            T  E+ A  G   +   + Y
Sbjct: 248 FTITEVAALAGHSRITTTQIY 268


>gi|158426110|ref|YP_001527402.1| tyrosine recombinase [Azorhizobium caulinodans ORS 571]
 gi|158332999|dbj|BAF90484.1| tyrosine recombinase [Azorhizobium caulinodans ORS 571]
          Length = 306

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 42/275 (15%), Positives = 81/275 (29%), Gaps = 30/275 (10%)

Query: 85  GSLAVNSRISFESYFDQII-----RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
              + ++  ++             R  G         +   + +  R    ++  + L++
Sbjct: 18  RGASRHTLDAYGRDLADFEDFLSVRDHGIDAATTDDIRAYLAELTDRGLKATTVARRLSA 77

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF------KSFWSEGSQPR 193
           +R L+++   +     +P   +E PKR     +    + + +       ++     S  R
Sbjct: 78  IRQLYRFLYAEGRRGDDPAAVLEGPKRGRPLPKVLNVDQVTRLIDTAHDRAGEDVSSPER 137

Query: 194 LAF-------EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
           L         E L  +GLR S+         +     + T K      V L       + 
Sbjct: 138 LRRLRVVCLVELLYATGLRISELVSLPAAAARARDVIMVTGKGSKERMVPLSGPAKAAMT 197

Query: 247 M---------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSA 294
                       + K  F    +   +     +   K  A  AGV     S H +R   A
Sbjct: 198 AYLAARAESGLAVSKWLFPTAAESGHLTRQHAARELKDLAVAAGVPPQALSPHVLRHAFA 257

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           +     GA    +    G   V   + YT   D  
Sbjct: 258 SHLLAHGADLRIVQTLLGHADVSTTQIYTHILDER 292


>gi|297182902|gb|ADI19052.1| integrase [uncultured delta proteobacterium HF0070_07E19]
          Length = 380

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 62/356 (17%), Positives = 120/356 (33%), Gaps = 32/356 (8%)

Query: 10  FVTKERTRHGKIIYYFR-KGHGRRIRLPYPHEST--FIPAYMS------ALTGSTPKREY 60
            V  +  R G   ++ R K  G R  +     S    + A  +       L+G +     
Sbjct: 13  GVFYQIDRKGNRTFFVRYKLQGSRKHIEERAGSEIHGMTAAKANLLRSERLSGKSNPNTQ 72

Query: 61  INSPRKKPT-----TLKWLISEY--RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK 113
                K  +     TL  L  EY   +S+   +    S  + E  F++           +
Sbjct: 73  RKLVEKAESSKNQWTLAKLWEEYAATRSSD-PARPYKSLGADEDRFNKHFSSISQLQPEQ 131

Query: 114 ITTKHIRSGVE--SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
           I   +        ++  +P++       +R + ++   +      P   +   K      
Sbjct: 132 IDHINYERWKRNIAKGRSPTTVCHCGELLRRIVRFGTERNLCNGLPFK-LSLKKPDNRTT 190

Query: 172 RPWTKEDMQQFKSFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQK 228
               +E + Q               F F L++GLR  +  R     +  +  I  ++  K
Sbjct: 191 EYLEREQLNQLIEALKLEEPITGNLFTFALFTGLRRGELLRLEWSDINFEQGIVQLRDTK 250

Query: 229 TGTIITVELPDGFMKLLAMTPI---GKETFFINNDKQKMNATQFSIWFKAKATKAGVN-- 283
            G   T+ L +  + LL   P    G +  F +    + + +     FK  A+++ +   
Sbjct: 251 AGKDQTLPLSEKALSLLENHPRHQSGCDYVFPSPQGCQWSRSSLDRVFKRIASRSNLPEG 310

Query: 284 -KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD---RIRLGIKN 335
            +  HG+R    ++ A+ GA   EL        V  +E Y   +D   R R+ +  
Sbjct: 311 FRLLHGLRHQYGSMLAENGANIVELRDLLRHSDVRVSERYLHSSDEHLRKRINLLG 366


>gi|53712967|ref|YP_098959.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|60681179|ref|YP_211323.1| putative bacteriophage integrase [Bacteroides fragilis NCTC 9343]
 gi|52215832|dbj|BAD48425.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|60492613|emb|CAH07385.1| putative bacteriophage integrase [Bacteroides fragilis NCTC 9343]
 gi|301162668|emb|CBW22215.1| putative bacteriophage integrase [Bacteroides fragilis 638R]
          Length = 406

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 40/216 (18%), Positives = 79/216 (36%), Gaps = 14/216 (6%)

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE---RPKRKTEGIRPWTKEDMQQF 182
           +  + ++ + +          AV  E +  NP   ++   +PKR+       T ++++  
Sbjct: 183 KNISANTQVHYYKVFHHCLNSAVIDEIITSNPMDKIKNEEKPKRRRTERAFLTIDELKIL 242

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVEL 237
                  +  + AF F  + GLR SD       +L+          +  QKT  I+++ L
Sbjct: 243 SQTDFHNATLKKAFLFSCFCGLRHSDIVALTWGNLKKGKVGKMELHMTQQKTQEILSLPL 302

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI-WFKAKATKAGVNK--SAHGVRKFSA 294
                + L   P+  +        + + +   +       A KAG+ K  + H  R   A
Sbjct: 303 S---KEALKQLPVRGKVPDTEKVFKGLISLGRTNEILPKWAAKAGIQKHITFHSARHTHA 359

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
           T+    GA  + +    G   +   + Y K  D  +
Sbjct: 360 TMMITLGADLYTVSKLLGHTNIQTTQIYAKIVDESK 395


>gi|260560424|ref|ZP_05832599.1| predicted protein [Enterococcus faecium C68]
 gi|260073584|gb|EEW61911.1| predicted protein [Enterococcus faecium C68]
          Length = 382

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 51/328 (15%), Positives = 112/328 (34%), Gaps = 49/328 (14%)

Query: 48  MSALTGSTPKREYINSPRKKPTTLKW----LISEYRKSAHWGSLAVNSRISFESYFDQII 103
             ALT    + E     + K  T +      I  Y ++    S  V ++  F ++   I+
Sbjct: 46  QLALTKLQLEYESNGLNKSKELTFQEVYDLWIVNYEQTVKESSF-VKTKEQFANH---IL 101

Query: 104 RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163
              G     KI+    +     +        +F+ +   +  +A++  Y+  NP   +  
Sbjct: 102 PAFGALKINKISIDIAQKFANEKVKKFVLYREFINNASRICDYAIKLGYLQDNPFKKITV 161

Query: 164 PKRKTEGIRPWT-----KEDMQQFKSFWSEGSQPRLA--FEFLLYSGLRCSDSCRAGVQH 216
           PKRK       T     KE+++ F     +    R+   F  L ++G+R  +      + 
Sbjct: 162 PKRKVSVHEEDTLNFFNKEELEIFLKSVEKKKDIRMYSFFRTLAFTGMRVGELLALTWKD 221

Query: 217 LQ----------------NNIFSIKTQKTG-TIITVELPDGFMKLLAMTPIGKETFFINN 259
           +                 N    ++  KT  +   + + D  M +L    + +  + +  
Sbjct: 222 IDFNDNYIKINKTLARGKNRRLYVEQPKTKNSKRDIPVDDETMNILKKWRLEQRKWLLTL 281

Query: 260 DKQKMNATQF---------------SIWFKAKATKAGVNK-SAHGVRKFSATISADAGAT 303
               ++  Q                  W +    +  + + + HG+R   A++  +AGA 
Sbjct: 282 GINTLSKNQLVFSNQKNEYLQLSKPRKWLEVIIKQNNLKRITIHGLRHTHASLLLEAGAN 341

Query: 304 AHELMATYGWKTVDQA-ETYTKGADRIR 330
             ++    G  ++    + Y    D+ +
Sbjct: 342 IKDVQERLGHSSIQITMDLYIHITDKRK 369


>gi|295396350|ref|ZP_06806516.1| tyrosine recombinase XerD [Brevibacterium mcbrellneri ATCC 49030]
 gi|294970790|gb|EFG46699.1| tyrosine recombinase XerD [Brevibacterium mcbrellneri ATCC 49030]
          Length = 329

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 46/275 (16%), Positives = 92/275 (33%), Gaps = 35/275 (12%)

Query: 85  GSLAVNSRISFESYFDQI-----IRKSGD-FDYRKITTKHIRSGV---ESRKHTPSSAIQ 135
            + + ++  ++ +    +        +GD      I   ++R  +    ++  +P +  +
Sbjct: 38  KNASEHTVRNYIADATNLMEFLARDGNGDPIHLADIEIGNLRQWLLHLSAQGASPGTLAR 97

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW---------------TKEDMQ 180
            +  +R  F +  R    A NP   +  PK+ T                       ED +
Sbjct: 98  RIAGIRSFFTFTTRAGITATNPASRLSTPKKATRLPTVLQQSHTEDVLTQPFEPPAEDAK 157

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE--- 236
             K+  +  ++     E L  +G+R S+        +      I    K      +    
Sbjct: 158 LTKTQRAARTRDIALVELLYATGMRVSELVNLDTTDVDWTAGLITVLGKGNKQRRIPFGG 217

Query: 237 -----LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF-KAKATKAG-VNKSAHGV 289
                L +       +   G+E  F+     ++N  Q      KA A +A     S HG+
Sbjct: 218 PSQRALTEWLEVRNHLASEGQEALFVGVRGGRINQRQVRDVVHKATAKRAKSPEISPHGL 277

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           R  +AT   + GA   ++    G  T+   + YT 
Sbjct: 278 RHSAATHMVENGADIRQVQEFLGHATLSSTQIYTH 312


>gi|225018198|ref|ZP_03707390.1| hypothetical protein CLOSTMETH_02136 [Clostridium methylpentosum
           DSM 5476]
 gi|224948995|gb|EEG30204.1| hypothetical protein CLOSTMETH_02136 [Clostridium methylpentosum
           DSM 5476]
          Length = 348

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 45/287 (15%), Positives = 100/287 (34%), Gaps = 44/287 (15%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH------- 128
            ++ K      L   +   +     +     G     KIT +H++  + +          
Sbjct: 23  KQWFKEYAEVKLRERTIARYRQLEARTYAALGHLHMDKITVRHVQKFIHNLGEEGINQTT 82

Query: 129 ----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
                P +   +L+ +  +F +A++ + V  NPC  V+ PK + + +  +T E+ Q+F +
Sbjct: 83  GGRLAPKTIHHYLSFVSTIFSYAIKMQMVKNNPCEHVQLPKAEQKELDCYTLEEAQEFLN 142

Query: 185 FW-SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK---------------T 226
               E  + +  F   +Y G R  +      + +     + SI+               T
Sbjct: 143 LLQKEPLKYQAFFTLAIYGGFRKGELLGLEWKDIDFSTGVISIRRSSLYTKGKGTFTDTT 202

Query: 227 QKTGTIITVELPDGFMKLLAMTP--------------IGKETFFINNDKQKMNATQFSIW 272
           +   +  ++++ D  +++L                  +  +  F   + + M+      W
Sbjct: 203 KTKSSQRSLKIADEVLQVLKRYQSQQIFDRARVGDQWVDTDRLFTKWNGEPMHPNSPYTW 262

Query: 273 FKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
            K    + G      H  R  +AT+  +    A  + A+ G   V  
Sbjct: 263 LKRFCERTGQRFLGVHQFRHLNATLLINNRVDAKTISASLGHTQVST 309


>gi|147668708|ref|YP_001213526.1| phage integrase family protein [Dehalococcoides sp. BAV1]
 gi|146269656|gb|ABQ16648.1| phage integrase family protein [Dehalococcoides sp. BAV1]
          Length = 332

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 52/296 (17%), Positives = 104/296 (35%), Gaps = 31/296 (10%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESY---FDQIIRKSGDFDYRKITTKHIRSGVESRKHT-- 129
           +S Y   A  G L+  +  ++      F    ++ G     +IT+ H+   ++  + T  
Sbjct: 31  LSTYLLMAKVGQLSPATISNYRYMCGKFVDFCQEHGVTKPAQITSIHLGLFLQQLQLTNG 90

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
           P S   +   +R    W      + ++P   V  PK   + I+P+T+E  Q+  +  S  
Sbjct: 91  PQSVTDYFKQIRPFINWLKDNGQITVDPLKQVRLPKVPRKVIQPFTQEHCQRLLALVSGE 150

Query: 190 S----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFMKL 244
           +    + +     LL +GLR  +        +  +   +K    G     V +     + 
Sbjct: 151 TFEDKRNKALILLLLDTGLRLRECTELKWSDINYDSELVKVMGKGAKERIVRIGPKVQRA 210

Query: 245 LA-------MTPIGKET--FFINNDK--------QKMNATQFSIWFKAKATKAGVN---K 284
           L         +  G +T   +++  K          +              +AG+     
Sbjct: 211 LLEYQYLKIQSFPGDKTPDVWVSRHKTRYSDKECHPLTKNGIMQTIVVLGKRAGITNIRC 270

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
           S H  R   AT+    GA   E+ +  G  T+ Q   Y    +   + ++  ++ S
Sbjct: 271 SPHTFRHTFATMCLRNGAGEFEVQSLMGHSTLTQTRKYAASLN-SEVAVQGHKKFS 325


>gi|271965872|ref|YP_003340068.1| integrase family protein [Streptosporangium roseum DSM 43021]
 gi|270509047|gb|ACZ87325.1| integrase family protein [Streptosporangium roseum DSM 43021]
          Length = 339

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 45/315 (14%), Positives = 109/315 (34%), Gaps = 45/315 (14%)

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG--------DFDYRKITT 116
           R  P  L  +++E+  +     L+ ++   +    + +   +         D + R ++ 
Sbjct: 6   RPVPVGLSEVVAEFLSALRTKKLSSHTVAGYRRDLELVAGLAAAAAGVGVADLEVRSLSG 65

Query: 117 KHIRSGVESRK--HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
           + +R+         +P+S  +  ++      + V +  +  NP  +V RPK+  +  +P 
Sbjct: 66  RLVRTAFAEFSGPRSPASVNRAWSAWNQFLSFCVAEGLLEGNPMAAVPRPKQPAKAPKPL 125

Query: 175 ------TKEDMQQFKSFWSEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223
                 +   +++  +           +  +     L +G+R ++     +  +  +   
Sbjct: 126 LGDGSASATLLERIAAGARRARDPWVERDLVVLALALVTGMRSAELLGLTLGSIGGSPGD 185

Query: 224 IK---TQKTGTIITVELPDGFMKL-------------LAMTPIGKETFFINNDKQKMNAT 267
            +     K G   ++ +     +L             L+  P       ++   + +   
Sbjct: 186 RRIQVVGKGGRSRSLPIEAPVERLVERYLHSRMVRFGLSALPRSA-ALLVDTGNEPLRRG 244

Query: 268 QFSIWFKAKATKAGVNKSA------HGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
                 +     AGV+         H +R   AT  A+ GA+AHELM   G  ++   + 
Sbjct: 245 GLQYLVRQCYRHAGVHDRVQRGTLVHALRHEFATRLAERGASAHELMELLGHSSIVTGQA 304

Query: 322 YTKG-ADRIRLGIKN 335
           Y    A  +R   + 
Sbjct: 305 YIASTAREVRRAAQG 319


>gi|182417327|ref|ZP_02948665.1| tyrosine recombinase XerD [Clostridium butyricum 5521]
 gi|237668789|ref|ZP_04528773.1| phage integrase family protein [Clostridium butyricum E4 str. BoNT
           E BL5262]
 gi|182378835|gb|EDT76354.1| tyrosine recombinase XerD [Clostridium butyricum 5521]
 gi|237657137|gb|EEP54693.1| phage integrase family protein [Clostridium butyricum E4 str. BoNT
           E BL5262]
          Length = 292

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 81/235 (34%), Gaps = 15/235 (6%)

Query: 103 IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162
            +K   +    +T       + ++  +  S  + + S+R  + +   Q  +   P +  +
Sbjct: 38  RKKVDIYKSDNLTVASYIQNLLNQGKSERSINRIVISLRNFYSYLKSQSLIQEVPKIEYK 97

Query: 163 RPKRKTEGIRPWTKEDMQQF----KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218
             K   +  +  T E++ +     +    +G +     E +  +G++ S+     V+ + 
Sbjct: 98  SSKNNRKLPQILTIEEVDKIIRIVEKDCPKGIRDNALLELMYATGMKVSELINLNVEDVN 157

Query: 219 NNIFSIK-TQKTGTIITVELPDGFMKLL--------AMTPIGKETFFINNDKQKMNATQF 269
             +  ++ T        + +     K L         +   G    F+N +  K+     
Sbjct: 158 LELNFVRCTDNKHYERIIPIGRSACKALSEYLSIRYKIAQCGVSNLFVNLNGNKLTRQGI 217

Query: 270 SIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
               K  + KAG++K    +  R   A      GA    +    G + +   +TY
Sbjct: 218 WRIVKEYSRKAGIDKDVNLNTFRHSFAVHLLQNGANVRAVQKLLGNQVLTYMDTY 272


>gi|319953891|ref|YP_004165158.1| tyrosine recombinase xerc [Cellulophaga algicola DSM 14237]
 gi|319422551|gb|ADV49660.1| Tyrosine recombinase xerC [Cellulophaga algicola DSM 14237]
          Length = 308

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 45/264 (17%), Positives = 98/264 (37%), Gaps = 24/264 (9%)

Query: 85  GSLAVNSRISFESYFDQII----RKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFL 137
              ++N+  ++E+  ++ I      S   +  +++   IR+ + +    K    +  + +
Sbjct: 26  KKYSLNTIKAYENDLNEFILFCKDTSEVVNIDEVSYVMIRNWIVALVAAKIVNRTINRKI 85

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-----EGSQP 192
            S++  +K+ ++ E +++ P    +  K   +   P+++ +M +           EG + 
Sbjct: 86  ASLKAYYKFLLKTETISVTPLAKHKALKTAKKIEIPFSEAEMNEILVAIPFSEDFEGIRD 145

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF----MKLLAM 247
           +L  E L  +G+R  +     V ++     +IK   K      V L         + L  
Sbjct: 146 KLIIELLYATGIRRIELVNLKVVNVDLRQKTIKVLGKRNKERIVPLVASLVLLFQEYLDA 205

Query: 248 TPI-----GKETFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSAHGVRKFSATISADA 300
                    KE  F+     K+  T              + V KS H +R   AT   + 
Sbjct: 206 RSSVVSVGAKEFVFLLKSGGKIYETLVYRVINHYFGLVSSKVKKSPHILRHTFATHLLNK 265

Query: 301 GATAHELMATYGWKTVDQAETYTK 324
           GA  + +    G  ++   + YT 
Sbjct: 266 GADLNSVKELLGHASLASTQVYTH 289


>gi|281357422|ref|ZP_06243910.1| integrase family protein [Victivallis vadensis ATCC BAA-548]
 gi|281316025|gb|EFB00051.1| integrase family protein [Victivallis vadensis ATCC BAA-548]
          Length = 314

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 39/280 (13%), Positives = 87/280 (31%), Gaps = 38/280 (13%)

Query: 89  VNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLF 144
              R     +  +++     F+      +   +   S +     +  S  + L+++R  F
Sbjct: 24  EAYRSDILEFLRRVMEADESFNAWSQVERNQARRFVSSLFEAGDSKRSIQRKLSALRSFF 83

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF--------------------KS 184
           ++ +R E +  NP L +   K         +   +                       ++
Sbjct: 84  RYMMRMELLGDNPFLKLPPIKADQPLPLVMSINQIDLLTKAVGEYWEMAAANGISKSDEA 143

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDG-- 240
                ++     E +   GLR S++    +  +     I  ++ +     I V       
Sbjct: 144 AEFAAARDLAMVEVIYSGGLRISETTGLDMGDIDLIGGIARVRGKGKKERIAVLGRPSQK 203

Query: 241 -------FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRK 291
                      +          F+N   +++    F    K     A +  + + H +R 
Sbjct: 204 ALRNYFKLRSTVGGGRAPGSPVFLNKFGKRLTPRSFQRNLKNYLIAANLPPDLTPHKLRH 263

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330
             AT   DAGA    +    G + +   + YT   A+R++
Sbjct: 264 SFATHLLDAGADLRSVQEMLGHENLSTTQIYTHVSAERMK 303


>gi|88813056|ref|ZP_01128298.1| Tyrosine recombinase XerC [Nitrococcus mobilis Nb-231]
 gi|88789689|gb|EAR20814.1| Tyrosine recombinase XerC [Nitrococcus mobilis Nb-231]
          Length = 301

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 34/261 (13%), Positives = 77/261 (29%), Gaps = 21/261 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRKHTPSSAIQFLT 138
             LA  +R  +    + +    G               +   +          S  + L+
Sbjct: 16  RRLARLTRQHYRRDLETLAGYCGALGLSGWEQVNATHIRRFIAWRHRSGLAGRSLQRMLS 75

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR----L 194
           S+R L+++ +R+     NP   V  PK +         ++              R     
Sbjct: 76  SIRTLYRYLIREGVTRSNPGTGVRAPKTRQRLPEALDVDETAHLLDEPPASDPLRVRDVA 135

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLL 245
            FE L   GLR ++        +      ++    G  + V          L        
Sbjct: 136 MFELLYSCGLRLAELAGLSTDAVTGREAELRVTGKGCKMRVVPIGRQARCALLRWLTLRP 195

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGAT 303
            +    +   F+    ++++     +  +  A + G+++    H +R   A+   ++   
Sbjct: 196 GLARSDEPALFVARHGRRLSHRSIQVRLERLAQRRGLHRRVHPHMLRHSFASHLLESSGD 255

Query: 304 AHELMATYGWKTVDQAETYTK 324
              +    G   +   + YT 
Sbjct: 256 LRAVQELLGHAHIGTTQVYTH 276


>gi|294625939|ref|ZP_06704551.1| phage-related integrase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|292599734|gb|EFF43859.1| phage-related integrase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
          Length = 399

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 54/302 (17%), Positives = 102/302 (33%), Gaps = 19/302 (6%)

Query: 44  IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-I 102
           +     A            +  +K  T+K     + +         +++  ++   D+ I
Sbjct: 73  MAQEWLAEVRRGGDPSAAKAAARKAQTMKEYCHTFMEDYSKQRNKPSTQRGYQGVIDRCI 132

Query: 103 IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA--INPCLS 160
           I   G    + +    + + ++   H P+ A +    +R +F  A          NPC  
Sbjct: 133 IPILGRMKVQDVKWPDVAALMKKLAHKPAEANRAFGVLRKMFNLAEVWGLRPDGTNPCRH 192

Query: 161 VERPKRKTEGIRPWTKEDM----QQFKSFWSEGSQPR---LAFEFLLYSGLRCSDSCRAG 213
           V       +  R    +++    +Q +   +EG +     LA         R S+ C   
Sbjct: 193 VPM-YPPGKETRLIVDDELVRIFRQLEKLEAEGLESYVIPLAIRLQFEFAARRSEICPLE 251

Query: 214 VQHLQNN--IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI----NNDKQKMNAT 267
              +            KTG  I+  + +   +LL+  P  +   ++    N+    +   
Sbjct: 252 WDWVDLEKRRVVWPDSKTGG-ISKPMSEEAYRLLSTAPRREGCPYVLPSPNDPNPHLTHG 310

Query: 268 QFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           +    +K     AGV     HG+R  S T  A++G      MA  G KTV     Y    
Sbjct: 311 EHYGGWKRMLKVAGVPHVGTHGIRHRSTTDIANSGVPTKVGMALTGHKTVAMFMHYVHTE 370

Query: 327 DR 328
           D+
Sbjct: 371 DK 372


>gi|149919028|ref|ZP_01907513.1| site-specific recombinase, phage integrase family protein
           [Plesiocystis pacifica SIR-1]
 gi|149820181|gb|EDM79600.1| site-specific recombinase, phage integrase family protein
           [Plesiocystis pacifica SIR-1]
          Length = 363

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 41/281 (14%), Positives = 84/281 (29%), Gaps = 26/281 (9%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR-- 126
           T +    E++ +    +   +++ S E      +I   G      I  +HI     ++  
Sbjct: 55  TFRVFAREFQTNYVATNNKPSTQRSKERVLRLHLIPFFGYMRLDAIGPRHIERYKATKLK 114

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            ++  +    LT +R L + A     +   P   +   K      R     + ++     
Sbjct: 115 DYSRKTLNNHLTILRKLLETAREWGLIDKVPS--IRWLKAAKPEFRWLDFAEAERLLEAS 172

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQ---------KTGTIITV 235
               + R+     L +GLR  +      Q +  +    +++           K+G    V
Sbjct: 173 RCEPEWRMMILLGLRTGLRQGELLALRWQDVCFEARRIAVRQAVAEGILGTPKSGRAREV 232

Query: 236 ELPDG-FMKLLAMTPIGKET----FFINNDKQK---MNATQFSIW-FKAKATKAGVNK-S 285
            L      + +      +       F   D      M       W  +    +A +    
Sbjct: 233 PLSPATLAEFVRHQARYRHLRSPWVFCQLDGDHAGEMLTKGMCKWPLRRARDRADLEALG 292

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            H +R   A+  A  G     +    G  T++    Y   A
Sbjct: 293 WHDLRHSFASHLAMRGVPLKAIQELLGHSTIEMTMRYAHLA 333


>gi|228900732|ref|ZP_04064950.1| Integrase/recombinase [Bacillus thuringiensis IBL 4222]
 gi|228858916|gb|EEN03358.1| Integrase/recombinase [Bacillus thuringiensis IBL 4222]
          Length = 305

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 42/283 (14%), Positives = 98/283 (34%), Gaps = 29/283 (10%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR----KSGDFDYRKITTKHIRSGV--- 123
           L+++I +Y +      LA  +  S+    ++  R    +    +   IT   I+  +   
Sbjct: 4   LRFMIKDYLEDKELSGLAPRTIQSYGDTLNEFSRWLVVEKEIINIEDITPPVIKGYLLYC 63

Query: 124 -ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPWTKEDMQ 180
            + R +T  +    L  ++  F++   ++ +    NP   ++ P +  + I+ ++ E ++
Sbjct: 64  SKERGNTVVTRNGKLQHLKTFFRYLEDEDIIEIRSNPTNKIK-PAKTDKTIKVYSDEQIK 122

Query: 181 QFKSFWS-----EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTG 230
           Q   ++      E +    +       L  +G+R  +        +     +I    K  
Sbjct: 123 QMLRYYRRMRSRENTLYSYRGHTVIVVLAGTGIRLGELVSMRWDSVDLLNKTITIFGKNR 182

Query: 231 TIITVELPDGFMKLLAMTPIGKE--------TFFINNDKQKMNATQFSIWFKAKATKAGV 282
             ++  L D   + L    +  E          F ++    +      + F   +++ G 
Sbjct: 183 KSLSTPLTDKVARELYEWRLFCEKYYIKLPAHVFNDHRGNPLTVNAVKLMFTRLSSRMGF 242

Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
             +AH  R   A+    AG   + L        +   E Y   
Sbjct: 243 KTTAHMFRHTYASNCLRAGMDIYTLSKLMHHSQIRTTEVYLHA 285


>gi|294651114|ref|ZP_06728450.1| site-specific tyrosine recombinase [Acinetobacter haemolyticus ATCC
           19194]
 gi|292823008|gb|EFF81875.1| site-specific tyrosine recombinase [Acinetobacter haemolyticus ATCC
           19194]
          Length = 308

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 47/286 (16%), Positives = 100/286 (34%), Gaps = 28/286 (9%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVESR----K 127
           L+S + K     + + ++  +++       R  +      + +    +R  + SR    +
Sbjct: 11  LLSMWLKERIIQNQSAHTISAYQRDLSDFFRFCEYKQLQLQDVEASDLREYLASRVEQDQ 70

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            + SS  + LTS+R   KWA + +Y+  NP   ++  ++          E + Q     +
Sbjct: 71  LSSSSLQRNLTSIRQFMKWAAQGQYLQHNPSADLKLKRQPRPLPGMIDIETVNQILDQAA 130

Query: 188 EG--------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---- 235
                      + +   E L  SGLR ++     ++ +  N   ++    G    +    
Sbjct: 131 PEKPIDQQLWLRDKAMLELLYSSGLRLAELQGLTIKDIDFNRQLLRITGKGNKTRIVPFG 190

Query: 236 -----ELPDGFM--KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286
                 L +     ++   + +     FI+     +   Q     K +A +AGV  +   
Sbjct: 191 TKAKQSLIEWLKIYRIWQGSFMADSAVFISQRGGALMPRQIENRVKLQAQRAGVNVDLHP 250

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           H +R   A+    A      +    G   +   + YT   D  +L 
Sbjct: 251 HLLRHCFASHMLSASRDLRSVQEMLGHSNLSTTQIYTH-VDFDQLA 295


>gi|237738614|ref|ZP_04569095.1| phage integrase [Fusobacterium sp. 2_1_31]
 gi|229424097|gb|EEO39144.1| phage integrase [Fusobacterium sp. 2_1_31]
          Length = 371

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 54/357 (15%), Positives = 117/357 (32%), Gaps = 39/357 (10%)

Query: 12  TKERTRHGKIIYYF-----RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
                R+GK  Y          +G++IR  +    ++  + +     +   +   NS   
Sbjct: 12  ISTVIRNGKTYYKANITVGWDSNGKQIRKSFG---SYKKSVVLDKMNTAKYQAKTNSLSN 68

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFES--YFDQIIRKSGDFDYRKITTKHIRSGVE 124
              +   L  ++  +     ++ N+   +E+      +          +IT K ++    
Sbjct: 69  SDISFGELFKDWIFNFKKIEVSPNTFYEYEASYRLRLMNYSIARKKANQITLKDLQQYFN 128

Query: 125 SRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK-RKTEGIRPWTKEDMQQ 181
             +   T ++  +    +    K+A+ Q  +  + C  V   K  K E I  ++K++ + 
Sbjct: 129 ELQKDFTANTIKKTYIQIHSCIKFAIIQGIMMKDFCPGVTLQKITKKENINVFSKQEQEM 188

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-------------- 227
                 +         F  Y+GLR  +        +++N+  I  Q              
Sbjct: 189 VLRTLDKRDIVDCLIYFTFYTGLRLGEVLGLQWSDIKDNMVKITRQYRRNVDVDKVDDRK 248

Query: 228 --------KTG-TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKAT 278
                   KT  +   + LPD   +LL   P      F +N  + +   +      +   
Sbjct: 249 LTYTFKELKTKNSAREIPLPDKVQELLKDIPRQGNLIF-SNLGKPIEPKKPQRRIASICK 307

Query: 279 KAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGI 333
           K  + ++S H +R   AT   +       +    G   +    + YT      +L +
Sbjct: 308 KLNIPHRSFHSIRHSYATRLFEMDIPIKTVQVLLGHGDIATTMDIYTHVMKEKKLEV 364


>gi|148543941|ref|YP_001271311.1| phage integrase family protein [Lactobacillus reuteri DSM 20016]
 gi|184153337|ref|YP_001841678.1| phage integrase [Lactobacillus reuteri JCM 1112]
 gi|227364850|ref|ZP_03848897.1| phage integrase family protein [Lactobacillus reuteri MM2-3]
 gi|325682524|ref|ZP_08162041.1| phage integrase family site-specific recombinase [Lactobacillus
           reuteri MM4-1A]
 gi|148530975|gb|ABQ82974.1| phage integrase family protein [Lactobacillus reuteri DSM 20016]
 gi|183224681|dbj|BAG25198.1| phage integrase [Lactobacillus reuteri JCM 1112]
 gi|227070113|gb|EEI08489.1| phage integrase family protein [Lactobacillus reuteri MM2-3]
 gi|324978363|gb|EGC15313.1| phage integrase family site-specific recombinase [Lactobacillus
           reuteri MM4-1A]
          Length = 386

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 50/368 (13%), Positives = 114/368 (30%), Gaps = 52/368 (14%)

Query: 15  RTRHGKIIYYFRK--GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           R R  K  Y F      G+R +       ++  A                       +  
Sbjct: 6   RKRGKKWYYRFDIADKDGKRRQYERVGGDSYKEAMHRLRVALELYENTGAVTNTDKISTH 65

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRSGVESRKHT-- 129
                +  +    +L+ N+++++    D+ ++   G +   K+T + I+  +     +  
Sbjct: 66  DYFEFWYDNYVKTNLSKNTQLNYRHVLDKYVQPTLGIYQLSKVTPELIQKTINKIADSTE 125

Query: 130 ---------PSSAIQFLTSMRVLFKWAVR-QEYVAINPCLSVERPKRK-----TEGIRPW 174
                      +    L  ++  F+ AV     +  +P   V +PK        E ++  
Sbjct: 126 YKPDHSRLHGHTVEIILMVIKEGFRQAVHPWHILTQSPAEYVRQPKYNHPKTTREDLKII 185

Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ----- 227
           T +   Q    +  G    L      Y+G+R  +       ++   +   ++  Q     
Sbjct: 186 TLQQFNQLLEQFPLGHPFHLPLLISFYTGMRRGEVAGLEWDNVSLPDAEINVTQQMKQYS 245

Query: 228 KTGTII----------TVELPDGFMKLLAMTPI--------------GKETFFINNDKQK 263
           KT   +          T+ + D  +  L +                          + + 
Sbjct: 246 KTDVRLGKLKTAASYRTIAIGDQLIHALKVQRRLQNENRLRYGKNYHESNFVCTKENGKP 305

Query: 264 MNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETY 322
           +       +      + G   + H +R   AT+  +AGA+A E+    G   +    +TY
Sbjct: 306 VTPNSIKYYASTVTKELGFPFNFHSLRHTHATMLLEAGASAKEVQVRLGHNKIATTLDTY 365

Query: 323 TKGADRIR 330
              +++ +
Sbjct: 366 VHLSNKKK 373


>gi|309775337|ref|ZP_07670345.1| putative tyrosine recombinase XerD [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308916919|gb|EFP62651.1| putative tyrosine recombinase XerD [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 309

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 35/301 (11%), Positives = 92/301 (30%), Gaps = 28/301 (9%)

Query: 74  LISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKHTP 130
           ++++Y +  +    L  ++  +++    Q +       +D +K +     + +      P
Sbjct: 9   IVNQYLQECSIAKELNAHTLKAYQIDLKQFLSFMELYSYDIQKESLHAYITHLHKTYQKP 68

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG-IRPWTKEDMQQFKSFW--- 186
            +  + + S+  LF + V  +++  NP   +    R+     R      +    S     
Sbjct: 69  KTIKRKIASINALFSYLVFHDFIETNPMSRLRTAFREPRLLPRTIPNSHLSSIFSRVYDE 128

Query: 187 ----------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV- 235
                        ++     E L  +G+R S+ C      +      ++    G    + 
Sbjct: 129 MKDCKTSYQRKVCTRNAAVLELLFSTGMRVSELCHVKDDEINLRERYVRIYGKGAKERIL 188

Query: 236 --------ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKS 285
                   ++   +  L          FFIN     ++     +          +  + +
Sbjct: 189 QIGNPDVLKILYSYRALFQKEIETSGYFFINKLGNPLSEQSVRLLIARYEKILKIPQHLT 248

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345
            H  R   AT   +       +    G  ++   + YT  +   +  I   +   + +  
Sbjct: 249 PHMFRHTFATQLLEEDVDIRYIQHILGHSSITTTQIYTHISSNKQKEILYQKNPRNFIGH 308

Query: 346 D 346
           +
Sbjct: 309 N 309


>gi|297544590|ref|YP_003676892.1| tyrosine recombinase XerD [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|296842365|gb|ADH60881.1| tyrosine recombinase XerD [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 290

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 29/240 (12%), Positives = 88/240 (36%), Gaps = 13/240 (5%)

Query: 89  VNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWA 147
            +     + + + +       ++ +K T  +    ++ +  + ++  + ++S++  + + 
Sbjct: 25  ESYNRDIKQFLNYLEEIGINYYNVKKSTILNYLYYLKKKGKSQATVSRNVSSLKAFYHYL 84

Query: 148 VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFEFLLYSG 203
             ++ +  +P   +  PK + +     T E +    S       +G + +   E L  +G
Sbjct: 85  FMKKKIEEDPTYMINTPKVEKKPPTALTVEQVDMLLSIDFGNDEKGLRDKALIELLYATG 144

Query: 204 LRCSDSCRAGVQHLQNNIFSIKTQKTGTII------TVELPDGFMKLLAMTPIGKETFFI 257
           L+ S+     ++ +  +   +  +     +       +E    +++       G+ T F+
Sbjct: 145 LKVSEVISLKLEDVNLSYGYVVIRSNKERVIPIGSHAIEALKNYIEKGRKAKNGENTLFL 204

Query: 258 NNDKQKMNATQFSIWFKAKATKA--GVNKSAHGVRKFSATISADAGATAHELMATYGWKT 315
           N   +K+         +    K   G   + + +R+  A      GA    +    G++T
Sbjct: 205 NLRGEKLTRQGCWKIIREYTDKINPGFPVTPNTLRQSFAQHMLQNGADIRAVQEMLGYQT 264


>gi|255037676|ref|YP_003088297.1| integrase family protein [Dyadobacter fermentans DSM 18053]
 gi|254950432|gb|ACT95132.1| integrase family protein [Dyadobacter fermentans DSM 18053]
          Length = 290

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 41/262 (15%), Positives = 85/262 (32%), Gaps = 14/262 (5%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF 136
           E R SAH           F+ Y       +     +    +     +      PSS  + 
Sbjct: 12  EKRASAHTIKSYQTDLEQFQKYLLFQYECNEPETAKAPMLRSWVVSMMEEGLNPSSINRK 71

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-----WSEGSQ 191
           + ++R  + +  +++++  +P   +   K + +      ++ M+             G +
Sbjct: 72  IAALRTFYGYLRKKKHIDSDPTKILSALKTRKKLPAFVEEKSMELLFEEGVFSEDFSGLR 131

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLL----- 245
            R+  E L  SG+R S+     ++ L     +I+   K      V +     +LL     
Sbjct: 132 DRVIMELLYGSGIRLSELVELELKDLNLPARTIRVFGKRAKERIVPVSTSLAQLLHKYTE 191

Query: 246 -AMTPIGKETFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSAHGVRKFSATISADAGA 302
                   +   + +  + +         K    A      KS H +R   AT   + GA
Sbjct: 192 QRAPEEDTDVLLLTDSNKAIYPVFVQRKVKQYLSAVTTLSQKSPHVLRHTYATHLLNRGA 251

Query: 303 TAHELMATYGWKTVDQAETYTK 324
             + +    G   +   + YT 
Sbjct: 252 DLNAIKELLGHANLAATQIYTH 273


>gi|145639433|ref|ZP_01795038.1| tyrosine recombinase [Haemophilus influenzae PittII]
 gi|145271480|gb|EDK11392.1| tyrosine recombinase [Haemophilus influenzae PittII]
          Length = 295

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 38/260 (14%), Positives = 87/260 (33%), Gaps = 21/260 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRKHTPSSAIQFLT 138
             ++ ++  +++   D  I+     D    T       + I +  + +     S    L+
Sbjct: 16  RQMSPHTITNYQHQLDATIKILAQQDIHSWTQVTPSVMRFILAESKKQGLKEKSLALRLS 75

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS---FWSEGSQPRLA 195
           ++R    + V+Q  + +NP   +  PK+     +    E +QQ  +         + R  
Sbjct: 76  ALRRFLSFLVQQGELKVNPATGISAPKQGRHLPKNMDGEQVQQLLANDSKEPIDIRDRAI 135

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLLA 246
            E +  SGLR S+     +  +   +  ++    G    V          + +       
Sbjct: 136 LELMYSSGLRLSELQGLDLNSINTRVREVRVIGKGNKERVVPFGRYASHAIQEWLKVRAL 195

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATA 304
             P   E  F++    +++        +    +  +N   + H +R   AT   +A +  
Sbjct: 196 FNP-KDEALFVSQLGNRISHRAIQKRLETWGIRQDLNSHLNPHKLRHSFATHMLEASSDL 254

Query: 305 HELMATYGWKTVDQAETYTK 324
             +    G   +   + YT 
Sbjct: 255 RAVQELLGHSNLSTTQIYTH 274


>gi|325840448|ref|ZP_08167047.1| site-specific recombinase, phage integrase family [Turicibacter sp.
           HGF1]
 gi|325490315|gb|EGC92644.1| site-specific recombinase, phage integrase family [Turicibacter sp.
           HGF1]
          Length = 371

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 48/360 (13%), Positives = 103/360 (28%), Gaps = 40/360 (11%)

Query: 22  IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKS 81
            YY  K  G   +       T   A  +         +          T++  I+ + ++
Sbjct: 14  YYYKYKQDGTYKKKEKGGFKTKKDAQHALREALVIFEKQGLVQAATTYTIEEYINYWMEN 73

Query: 82  AHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGV--ESRKHTPSSAIQFLT 138
                L  N+   +       I  + G      I    +++    + +  + S       
Sbjct: 74  VAEIKLRYNTLDLYRRAIRLHINPEIGFLKLNNIKADTLQTFFTTKQKALSDSYINAIRN 133

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI-RPWTKEDMQQFKSFWSEGSQPRLAFE 197
            +   FK A++Q  +  NP   +E    K E      T E ++      S  ++  + F 
Sbjct: 134 ILNGTFKLAIKQGLILFNPMHQLELHYSKVEKNLEIITTEHLKIILDDIS-NTRYYIPFI 192

Query: 198 FLLYSGLRCSDSCRAGVQHL----------------QNNIFSIKTQKTGTII-TVELPDG 240
             L++G R  +        +                     S+   KT + I T+ +   
Sbjct: 193 ISLHTGARRGEILALTWDDIHFETRKITFNKSLLAKDGEGVSLAQTKTKSSIRTILMTQK 252

Query: 241 FMKLLAMTP---------------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS 285
            +  L                      +    N D   +N  +FS      + +  +   
Sbjct: 253 LITELQQWQDKQNQNKQLYAEYYYTEHDFVCSNEDGTPINPKRFSTQINRISKRLNIPIK 312

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVVD 344
            H +R   AT+  ++      +    G   +      Y+      +   +   +  S ++
Sbjct: 313 FHNLRHTHATLLLESDVNIKVIQERLGHSDISTTLNVYSHVTQ--KTEAEAIAKFESNLN 370


>gi|301059797|ref|ZP_07200691.1| site-specific recombinase, phage integrase family [delta
           proteobacterium NaphS2]
 gi|300446123|gb|EFK09994.1| site-specific recombinase, phage integrase family [delta
           proteobacterium NaphS2]
          Length = 375

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 47/318 (14%), Positives = 102/318 (32%), Gaps = 34/318 (10%)

Query: 59  EYINSPRKKPTTLK----WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI 114
                 R  P T       L++ + +      L+  +   +  +   +++  GD    +I
Sbjct: 58  PLQKKERFTPLTFGEVAESLLAVWDERLKIRELSQKTHNDYVYWLRILMKVFGDKLLCQI 117

Query: 115 TTKHIRSGVESRKHTPSS--AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
           T + I      +    S+  A + L  +R +F   ++   VA NP  +V     +     
Sbjct: 118 TKEDIEEYRNQKAQEFSNVCANKHLLRIRNVFAHGIKILAVANNPAKAVPLLSERAHIRD 177

Query: 173 PWT-KEDMQQFKSF-WSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHL-----QNNIFS 223
            +    ++++  +      S+  L    LL    G    +        +        +  
Sbjct: 178 TFVLPAELERILAASQKLRSKYYLPAVILLGAEHGASRQEILSLKWSKIKFDFQDIGLVE 237

Query: 224 IKTQKTGTIITVELPDGFMKLL--------------AMTPIGKETFFINNDKQKMNATQF 269
               KTG   T  L     K L               +T I  +  F + D       +F
Sbjct: 238 FFRTKTGRKRTEYLMPRTKKALLEWQSHLDFMRHRKRITDIKTDLVFCHLDGSPF--RRF 295

Query: 270 SIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
              +K     AG+     H +R    +    +G    +     G K +   + Y+   + 
Sbjct: 296 DTAWKKALDLAGIKGLHFHDLRHTFCSNLIISGGGIKDAKEMIGHKDISMTDRYSHLTNG 355

Query: 329 IRLGIKNSRRISSVVDSD 346
             L ++  +++++  ++ 
Sbjct: 356 RMLALQ--KQLAAHYENP 371


>gi|269127047|ref|YP_003300417.1| integrase family protein [Thermomonospora curvata DSM 43183]
 gi|268312005|gb|ACY98379.1| integrase family protein [Thermomonospora curvata DSM 43183]
          Length = 314

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 56/283 (19%), Positives = 101/283 (35%), Gaps = 30/283 (10%)

Query: 66  KKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRS 121
              + L+  +S Y         LA N+  S+     +    +R+ G     ++T   +  
Sbjct: 2   AAESALETAVSRYLAHLAADRGLAANTLSSYRRDLRRYAQALRERGRCAIGEVTEADVLG 61

Query: 122 GVE-----SRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
            +         H P    SA + + ++R L ++AVR+   A +P   V  P       + 
Sbjct: 62  YLAGLREGDAAHRPLSDRSAARAVAAVRGLHRFAVREGLAAADPAAGVRPPASPKRRPKA 121

Query: 174 WTKEDMQQFKSFW-----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQ 227
            +  ++++  +         G + R   E L  SG R S++    V  L      I+ T 
Sbjct: 122 ISVAEVERLLAAAASEGTPRGLRDRALLELLYGSGARISEAVALDVDDLDLKAGLIRLTG 181

Query: 228 KTGTIITVEL-----------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK 276
           K G +  V +                  LA         F+N    +++     +  +A 
Sbjct: 182 KGGRVRRVPVGEHARRAVEAYLRQARPHLAKDGTAGAALFLNARGGRLSRQGAWMVLRAA 241

Query: 277 ATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           A +A +   S H +R   AT   D GA A  +    G  + +Q
Sbjct: 242 AQRARLVGVSPHTLRHSFATHLLDGGADAGVVHQLLGNVSAEQ 284


>gi|15893191|ref|NP_360905.1| site-specific tyrosine recombinase XerC [Rickettsia conorii str.
           Malish 7]
 gi|34222950|sp|Q92G55|XERC_RICCN RecName: Full=Tyrosine recombinase xerC
 gi|15620404|gb|AAL03806.1| integrase/recombinase [Rickettsia conorii str. Malish 7]
          Length = 305

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 48/284 (16%), Positives = 106/284 (37%), Gaps = 28/284 (9%)

Query: 69  TTLKWLISEYRKSAHWG-SLAVNSRISFESYFDQIIR-----KSGDFDYRKITTKHIRSG 122
           T+++ LI++++K      + + ++ IS+ +     +       S       I T  IR  
Sbjct: 4   TSIQALINKWQKYLALQRNYSNHTVISYNNDLKHFLEFMNYYNSELVTINHIKTADIRLI 63

Query: 123 VESRKH------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
                       T SS  + L++++  +++  +   +  +   S++ PK+     +  ++
Sbjct: 64  RSWLAKRNCDNFTASSISRGLSAVKNFYRFLEKTTQLNSHIIFSIKSPKKTKLLPKALSE 123

Query: 177 ED-------MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229
           +D       ++++ +      + +     +  SGLR S++      HLQN  F     K 
Sbjct: 124 DDVVISLEHIEEYGNVKWVELRNKALLVLIYASGLRISEALSITKLHLQNLEFIRIIGKG 183

Query: 230 GTIITVELPD-------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
                +            ++++L       E  F     +K+    F+          G+
Sbjct: 184 SKERIIPWLPIAKNLITQYLEILPYKLGDNEPIFRGKQGKKLQPPVFNRELIKLKHFYGL 243

Query: 283 --NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             + +AH  R   A+   + GA    L    G K++   + YTK
Sbjct: 244 PQHLTAHSFRHSFASHLLEHGADLRSLQELLGHKSLSTTQNYTK 287


>gi|237718823|ref|ZP_04549304.1| integrase [Bacteroides sp. 2_2_4]
 gi|229451955|gb|EEO57746.1| integrase [Bacteroides sp. 2_2_4]
          Length = 386

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 49/261 (18%), Positives = 94/261 (36%), Gaps = 18/261 (6%)

Query: 92  RISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFL----TSMRVLFKWA 147
           R+  +    + + K              R+  + + +    A   L     +++ +F  A
Sbjct: 122 RVDKKDILLKDVSKDEICGLFDYMRNKYRNKRQIKTNGGRLADYTLLLFEETVKAIFNKA 181

Query: 148 VRQEYVAINPC---LSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR---LAFEFLLY 201
           +R+  V  NP      +ER     +     T E++ +F +  +E    R   LAF     
Sbjct: 182 MREGLVKFNPVHSLNKLERFHAPDKHREYLTPEELTRFLAVEAECENERTVQLAFGLSSM 241

Query: 202 SGLRCSDSCRAGVQHLQ--NNI--FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI 257
           + LR  D        ++  + +   SI  +KT     + L +    LL           +
Sbjct: 242 TALRLGDMQHLRWCDIKTIDGVPTISIIQRKTKRPAIIPLNEMAQSLLPPRTDDNPESLV 301

Query: 258 NNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKT 315
            +  +K  +   S + +    KAG+ K    H  R  +A+++  AGA    +    G  +
Sbjct: 302 FHLVKK--SDNVSKYVRRLKEKAGIEKDLTYHCSRHTTASLAISAGADISAVKDVLGHGS 359

Query: 316 VDQAETYTKGADRIRLGIKNS 336
           +   E Y K A   ++   N 
Sbjct: 360 ITSTEVYAKVALEKKIEAVNL 380


>gi|293400627|ref|ZP_06644772.1| integrase/recombinase XerD [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291305653|gb|EFE46897.1| integrase/recombinase XerD [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 303

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 42/265 (15%), Positives = 85/265 (32%), Gaps = 22/265 (8%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-----TPSSAIQFLTSM 140
           + ++ +  S+ +   + +       +  I         +  K        SS    +TS+
Sbjct: 19  NKSLATVASYRNDLKEYLAFLDAHGFTAIEDVTYMDLQDFLKEQKVKKKTSSVNHMITSL 78

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAFE 197
           R+  ++         +  L +   K   +    +   D+++    + +       +   E
Sbjct: 79  RMFHRYLTMTYPKIPDATLHICSSKTAKKLPTYFNVADIERLLDSFQDSDMDIFHKALLE 138

Query: 198 FLLYSGLRCSDS--CRAGVQHLQNNIFSIKTQKTGTIITVELPD----GFMKLLAMT--- 248
            L   GLR S+    R  + HL+     +   K      V +         + L      
Sbjct: 139 VLYGCGLRVSELTHLRLNMTHLEQGFLKV-LGKGEKERMVPMHQRSVHALQQYLEFVRPQ 197

Query: 249 --PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATA 304
                    F+N+  Q ++        K+K T  G++   SAH  R   AT   D GA  
Sbjct: 198 WVKQRSPFVFLNSRGQNISRQYVHNLIKSKLTALGLDERLSAHSFRHSFATHLLDGGADL 257

Query: 305 HELMATYGWKTVDQAETYTKGADRI 329
             +    G   +   + YT   ++ 
Sbjct: 258 RVVQELLGHADIATTQIYTHIQNKR 282


>gi|255692297|ref|ZP_05415972.1| tyrosine type site-specific recombinase [Bacteroides finegoldii DSM
           17565]
 gi|260622031|gb|EEX44902.1| tyrosine type site-specific recombinase [Bacteroides finegoldii DSM
           17565]
          Length = 368

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 31/260 (11%), Positives = 81/260 (31%), Gaps = 19/260 (7%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHTPSSA 133
           Y +       + ++  ++ +YF   +         ++    I   +      +K + S  
Sbjct: 96  YLELLEQKRYSPSTVKTYRAYFSDFMEYHKGRSIDRLKVADINKYILYLVNEKKISVSQQ 155

Query: 134 IQFLTSMRVLFKWAV--RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
              + +++  ++     +++Y        + R K         +++++++  S      +
Sbjct: 156 NMRINAIKFYYEQVKGGKRQYYG-----GITRAKEYKTLPEVLSRDEVKRILS-CLTNQK 209

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG-----FMKLLA 246
                  +  +GLR S+      Q + +    ++    G      L          +   
Sbjct: 210 HHCMISLIYSAGLRRSELLNLTPQDIVSERMLVRIMGKGKKCRYSLLSEKVLHELREYFK 269

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHG--VRKFSATISADAGATA 304
                K  F  +   ++ +A+      K  A +AG+    H   +R   AT   + G   
Sbjct: 270 EYRPKKWLFEGDTPGEQYSASALVKVLKEAAQRAGIKHRVHVHMLRHSFATHLLEQGTDL 329

Query: 305 HELMATYGWKTVDQAETYTK 324
             +    G   +     Y  
Sbjct: 330 RTIQELLGHNDIKTTSIYLH 349


>gi|222151103|ref|YP_002560257.1| hypothetical protein MCCL_0854 [Macrococcus caseolyticus JCSC5402]
 gi|222120226|dbj|BAH17561.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
          Length = 339

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 44/285 (15%), Positives = 92/285 (32%), Gaps = 46/285 (16%)

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYR-KITTKHIRSGV-------------- 123
            +     +L+  + I++   F  +     + D   KIT K  R  +              
Sbjct: 27  LEDKELQNLSRATIINYNKVFTSLSIFFDNIDDPFKITEKQAREYIRYLKNEHVHYKDKL 86

Query: 124 ----ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
               E R    S+   ++   + +++  V   Y+  NP  +++  K++ E I+    ED+
Sbjct: 87  HHKNEIRGLKASTINTYIKLCKSIYQTLVELNYIESNPFKAIKCLKKQNERIKTIPPEDI 146

Query: 180 QQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--------------NNI 221
            +  +   +      +   A    L +  R  +     +  +               +  
Sbjct: 147 NKLLNSLDKSYYTDFRMFTAIHVFLDTFGRIDEVLNIKITDIDFDKRSIYFPNTKNNDGR 206

Query: 222 FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281
           + + + KT  ++ VEL D             +  F+  D  K     F    K    +  
Sbjct: 207 YVMFSLKTKKLL-VELIDEMKDY------NNDFVFLAVDGGKFTNQAFRNQLKKYCKEYN 259

Query: 282 V--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +  N + H  R  ++ +  + G     L    G K +   E Y  
Sbjct: 260 IKTNITPHMFRHTASMLFLENGGNIRVLQKILGHKKLATTEIYAH 304


>gi|144898915|emb|CAM75779.1| Tyrosine recombinase xerC [Magnetospirillum gryphiswaldense MSR-1]
          Length = 314

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 49/281 (17%), Positives = 92/281 (32%), Gaps = 23/281 (8%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFES-YFDQIIRKSGDFDYRKITTKHIRSGVESRKH-- 128
            WL  E R S H          +F +     +  ++      ++     R+ + +R+   
Sbjct: 23  DWLAGEKRSSPHTLDGYARDVSAFTTFLLGHLGGEADLAALGQLQPADFRAFLAARQADG 82

Query: 129 -TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS-VERPKRKTEGIRPWTKED-MQQFKSF 185
              SS  + ++S+R  FK+  R + V  NP ++ V+ P+      +P   ED ++   + 
Sbjct: 83  LGRSSVARLMSSLRGFFKYLDRHDLV-HNPAINAVKSPRPPKSLPKPLAAEDAIEALSTA 141

Query: 186 WSEGSQPRLA------FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239
                +P LA      F  L   GLR  ++     + +        T K      V +  
Sbjct: 142 GELHDEPWLAARDVALFTLLYGCGLRLGEALALQKRDIPAGDAMTITGKGRKQRLVPVLP 201

Query: 240 GFMKLL-------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVR 290
              + +                 F+      +N        +      G+    + H +R
Sbjct: 202 IVRQAIGEYVTLCPHPLAADGPLFVGARGGLLNPGVVQRQMRRLRALMGLPDTATPHALR 261

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
              AT     G     +    G  ++   + YT   D  RL
Sbjct: 262 HSFATHLLAGGGDLRTIQELLGHASLSTTQRYT-QVDEARL 301


>gi|238028907|ref|YP_002913138.1| site-specific tyrosine recombinase XerC [Burkholderia glumae BGR1]
 gi|237878101|gb|ACR30434.1| Site-specific recombinase XerC [Burkholderia glumae BGR1]
          Length = 306

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 47/280 (16%), Positives = 86/280 (30%), Gaps = 32/280 (11%)

Query: 75  ISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTP 130
           I+ Y     H   L+ ++   +      +   +       +T   +RS V        + 
Sbjct: 6   IAAYLSYLQHVRQLSAHTLRGYAHELAALTAFASGRPLASLTAADMRSAVARAHAGGLSA 65

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---- 186
            S    L++ R  ++W  ++  +  NP  +V  PKR     +  + +D            
Sbjct: 66  RSIAHRLSAWRAFYRWYAQRVEMPANPVATVRAPKRARALPKALSVDDANTLMESAFPDT 125

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRA-------------GVQHLQNNIFSIKTQKTGTII 233
            EG + R   E    SGLR ++                 G         S+   K G   
Sbjct: 126 PEGLRDRAIVELFYSSGLRLAELVGLDVHYVNADGYRSAGWLDRGEAELSV-LGKGGKER 184

Query: 234 TVELPDGFMKLLAMTPIGKE--------TFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284
            V +    ++ L      +E          F++    +M         K  A  AG+   
Sbjct: 185 KVPVGRKALEALDAWLAVREGWVRGDPHPLFLSVRGNRMAPGVVRERVKRAARVAGIPAN 244

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
              H +R   AT    +      +    G  ++   + YT
Sbjct: 245 VHPHVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYT 284


>gi|257784281|ref|YP_003179498.1| tyrosine recombinase XerD [Atopobium parvulum DSM 20469]
 gi|257472788|gb|ACV50907.1| tyrosine recombinase XerD [Atopobium parvulum DSM 20469]
          Length = 302

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 39/266 (14%), Positives = 87/266 (32%), Gaps = 23/266 (8%)

Query: 85  GSLAVNSRISFESYFD-QIIRKSGDF--DYRKITTKHIRSGVESRKH---TPSSAIQFLT 138
             L+VN+  ++    +  +   SG       ++T   +   + S +     P+S  +   
Sbjct: 18  RGLSVNTLDAYTRDLEGYLFWLSGKKITSPNQVTRSDVEEYIGSLRDLGMAPASVERHTA 77

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRL 194
           ++R   K+   ++    +P   +    R        ++E  ++           G + + 
Sbjct: 78  AIRNFHKFMAVEQICESSPAEDLPTTARIQRLPDVISQEKAEELLDQPFPNSPLGIRDKA 137

Query: 195 AFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252
             E L   GLR S+ C   V+ +  ++ +  +  + +   +   L   +  L       +
Sbjct: 138 ILELLYGCGLRVSELCDLEVRGVLLEDELLRVFGKGSKERVVPVLGSAYRALKTYLFEAR 197

Query: 253 ETF---------FINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGA 302
                       F+N    +++               G+     H +R   AT   + GA
Sbjct: 198 SLLLKHGQVSEVFVNARGGRISRQSVHKLVANYGRVVGIEGLHPHTLRHSFATHLLEGGA 257

Query: 303 TAHELMATYGWKTVDQAETYTKGADR 328
               +    G   +   + YT   DR
Sbjct: 258 DLRSVQELLGHVDISTTQLYTH-VDR 282


>gi|223934444|ref|ZP_03626365.1| integrase family protein [bacterium Ellin514]
 gi|223896907|gb|EEF63347.1| integrase family protein [bacterium Ellin514]
          Length = 341

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 50/300 (16%), Positives = 106/300 (35%), Gaps = 29/300 (9%)

Query: 48  MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII--RK 105
           ++A  G   +         +  TL+  + +Y++       +  + ++   Y    I   +
Sbjct: 48  LAARAGRLTQEAIGYLISGRKLTLQKALEDYQEWMETRGKSPRTIMNNVHYIRSWITAAQ 107

Query: 106 SGDFDYRKITTKHIRSGVESRKHTPSSAIQ---FLTSMRVLFKWAVRQEYVAINPCLSVE 162
                   IT KHI   + +R  + + A      L ++R  F +   + +   +P   V 
Sbjct: 108 VEALPPAAITEKHISDWINNR-ESQTKANSRTIMLAAIRSFFFFIAGKGWTPNDPSKLVS 166

Query: 163 -------RPKRKTEGIRPWTKED----MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCR 211
                    +++T   R +T  +    ++    FW      R A +     GLR  D C+
Sbjct: 167 VNYKILSHVQKETTVKRVFTAAEYDGLVKATDGFW------RFAIQASRELGLRLGDICQ 220

Query: 212 AGVQHLQN-NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ----KMNA 266
                 +     ++ T K    +++++ DG  +   + P+    +    ++         
Sbjct: 221 LEWDCFRQPGYITVWTDKRDKRVSLKMSDGLAQAATLQPVAHARYVFPEERDIINDPTRR 280

Query: 267 TQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
              S+ F     + G+  KS H +R   AT S   G +  ++ +  G  +    E Y   
Sbjct: 281 AYLSVSFTRICARLGLKGKSFHCLRHTFATESNAEGRSLTQIASDMGHSSTRTTEGYVHK 340


>gi|225021106|ref|ZP_03710298.1| hypothetical protein CORMATOL_01118 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224946106|gb|EEG27315.1| hypothetical protein CORMATOL_01118 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 331

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 42/292 (14%), Positives = 87/292 (29%), Gaps = 21/292 (7%)

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDF-DY 111
            +       S     T L+  I+++ +  H     +  +   + S      + +  F D+
Sbjct: 23  QSQATSAAASEPVASTQLQEAIADFAEHLHLVVGRSPATVAGYRSDLIDFCQHAHTFEDF 82

Query: 112 RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
             +  +           + ++  +   + R    W  RQ Y+  N    +  PK      
Sbjct: 83  TLVNLRAWLGAAVDAGKSRATIARRAAAARSFSSWCERQGYLDTNVAARLAVPKSGRSLP 142

Query: 172 RPWTKEDMQQF-----KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK- 225
              T    +        +   E  +     E L  +G+R S+ C   +  +  +  ++K 
Sbjct: 143 TVVTPTAAETLMVSSQATTEPEYLRDTAMLELLYATGIRVSELCGIDLADVNYSRNTVKV 202

Query: 226 TQKTGTIITVELPDGFMKLLAM------------TPIGKETFFINNDKQKMNATQFSIWF 273
           T K      V   +     L                      F+     +++        
Sbjct: 203 TGKGNKQRVVPFGNPAASALKAWRDHGRPHLLNPKKPAHNALFLGARGGRIDPRMVRTVV 262

Query: 274 KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
                + GV+    H +R  +AT   D GA    +    G  ++   + YT 
Sbjct: 263 ARAGKQLGVDGLGPHSLRHSAATHMLDGGADLRVVQELLGHSSLQTTQIYTH 314


>gi|29566149|ref|NP_817718.1| gp41 [Mycobacterium phage Che9c]
 gi|29424874|gb|AAN12601.1| gp41 [Mycobacterium phage Che9c]
          Length = 400

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 49/342 (14%), Positives = 109/342 (31%), Gaps = 52/342 (15%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87
           G  +R+R  YP E     A ++ + G   +  Y++  ++   T++    ++       + 
Sbjct: 39  GKRKRLRRRYPTEKEARDA-LAQIRGQVAQGTYVHPTQR---TVREACDDWLAGKRAANR 94

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--------------TPSSA 133
           A ++   +E     +I + G+ + +K+T +H+   V + +               +P S 
Sbjct: 95  AESTVDGYEEKLTVVIEQLGEIEIQKLTKRHLDDLVTALREGGLPSPNGKPRKPWSPRSV 154

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
              L  +  + +   +Q +   N    V+R +       P T+ +++   +    G +  
Sbjct: 155 NYLLGLLVSILESEQKQGHTVRNVAALVDRIEANPTPPDPLTESEVETLLA-HIAGDRYA 213

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT----------------GTIITVEL 237
           +A+E  L  G R ++        +  +  ++  Q T                 +   + L
Sbjct: 214 IAWELALA-GFRLAEISGLRWCDVDLDARTVTVQNTRLQRGKKRIEKTPKSRASRRELPL 272

Query: 238 PDGFMKLLAMTPI--------------GKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
           PD                               +N     +        +      AG+ 
Sbjct: 273 PDDLFAAFKAARKIQAADQLRLGEAYEASGYVVVNEAGTPLTPNAIENRWARVLKAAGLR 332

Query: 284 K-SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYT 323
               H  R    T+    G     + A  G  +     +TY 
Sbjct: 333 HVRLHDARHTCGTLMHLRGVPTALISAWLGHASKAFTLQTYV 374


>gi|291166237|gb|EFE28283.1| integrase-recombinase [Filifactor alocis ATCC 35896]
          Length = 307

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 45/295 (15%), Positives = 99/295 (33%), Gaps = 27/295 (9%)

Query: 71  LKWLISEYRKSAHWGS-LAVNSRISFESYFDQ--IIRKSGDFDYRKITTKHIRSGVESRK 127
           L+ L+ EY K     + L   +  S++    Q  +     +  YRK         + ++ 
Sbjct: 3   LENLVDEYLKVCENQNNLNYKTVKSYKLDLKQYMVFLDKEENYYRKEILCKYIEMLHTKD 62

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQQFKS-- 184
           +   +  + + +++  F + V ++ +  NP + +  R K      +      ++      
Sbjct: 63  YRVKTIKRKIATLKAFFSYLVYEDILEYNPFVKIRLRLKEPVILPKTIPIVYLENLFKCL 122

Query: 185 ------------FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTG 230
                        +   S+  +  E L+ +G+R S+ C    + +     +  I  +   
Sbjct: 123 YDERDNADKNTYKYKALSRDIIILEILISTGIRISELCDLRKEQISYSERMIRIYGKGDK 182

Query: 231 TIITVELPDGFMKLLA-----MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--N 283
             I     +   K +           K  FFIN    K++        K    KA +  N
Sbjct: 183 ERILPVYNENLWKEIKQYEELFGLEIKGYFFINRINNKLSDQSVRNMIKKNCKKASIPIN 242

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338
            + H  R   AT+  +    +  +    G  ++   + YT      ++ I   + 
Sbjct: 243 ITPHMFRHTFATLLLENDVDSRNIQQILGHSSITTTQIYTNITSNKKIEIMKYKN 297


>gi|315604538|ref|ZP_07879601.1| tyrosine recombinase XerC [Actinomyces sp. oral taxon 180 str.
           F0310]
 gi|315313550|gb|EFU61604.1| tyrosine recombinase XerC [Actinomyces sp. oral taxon 180 str.
           F0310]
          Length = 303

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 49/300 (16%), Positives = 100/300 (33%), Gaps = 33/300 (11%)

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG-------DFDYRKITTKHIR 120
             ++     EY +      ++ ++  ++      ++  +G             +T + IR
Sbjct: 2   EASVGDRWGEYLRHGR--GMSDHTIEAYLGDLRSLLSFAGLAWEASAAELAEALTQRRIR 59

Query: 121 SGVE---SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
           S +    +R    S+  +   S+R    WA R+  +A +P   +  P+       P  + 
Sbjct: 60  SWLADTLARGGARSTIARHTASVRHFTAWATREGILAHDPAALLTSPRADQRLPAPLDES 119

Query: 178 DMQQFKSFW--------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229
           + +   +              +     E +   GLR S++C   +  L     +++    
Sbjct: 120 EARLLLNHARDEARGGGPSQLRNWAILELIYACGLRVSEACGLDISSLNREALTVRVTGK 179

Query: 230 GTIITV-----ELPDGFMKLLAMTPI------GKETFFINNDKQKMNATQFSIWFKAKAT 278
           G    V        D     L             +  F+ +   +++         A A 
Sbjct: 180 GNKERVVPYGPPAADALDHWLLRGRALLAREGSGDALFLGDRGGRIDPRIVRSMVHAAAA 239

Query: 279 KAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
           +AGV + + HG+R  +AT     GA    +    G  ++   + YT   D  RL     R
Sbjct: 240 RAGVHDVAPHGLRHSTATHLLQGGADLRAVQEMLGHASLATTQRYTH-VDTARLSAIYQR 298


>gi|283479906|emb|CAY75822.1| Tyrosine recombinase xerD [Erwinia pyrifoliae DSM 12163]
          Length = 351

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 43/289 (14%), Positives = 96/289 (33%), Gaps = 32/289 (11%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFE---SYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
           TL+ L   +         +  +   +      F       G     +++   + +     
Sbjct: 20  TLRQLAESWLAHLVVAGRSPRTVQGYRERVRAFLAWCEPRGITXAPQVSLAVLEAYQRWL 79

Query: 127 KHTPSSAIQ---------FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI-RPWTK 176
           +    +  +          LT++R+LF+W +++  +  NP   +  PK +     + +++
Sbjct: 80  QGYRRADGKQLVVNSQLGVLTAIRMLFRWLLQRHVILYNPAELLALPKEERRLPAQVFSE 139

Query: 177 ED----MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTG 230
            +    +Q   +    G + R   E L  SG+R S+     +  +     + +++  K G
Sbjct: 140 AETRRVLQSLDAGTPPGXRNRAILELLWSSGIRRSELAGLLLSDVDFTRGVVNVRRGKGG 199

Query: 231 TIITVEL----PDGFMKLLA------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280
               V +         + L                FI++    +     +        + 
Sbjct: 200 KDRVVPVGHTALMWLGRYLKDVRPRLAQRFDSGXLFISHKGTGLAHGTLTAMAGRAIREG 259

Query: 281 GVNKSA---HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
              K A   H  R   AT   + GA    + A  G + ++  + YT+ A
Sbjct: 260 AHLKXAGACHIFRHXMATQMLENGADTRHIQAILGHEKLETTQIYTRVA 308


>gi|148284235|ref|YP_001248325.1| site-specific tyrosine recombinase XerD [Orientia tsutsugamushi
           str. Boryong]
 gi|146739674|emb|CAM79467.1| site-specific recombinase [Orientia tsutsugamushi str. Boryong]
          Length = 309

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 40/287 (13%), Positives = 97/287 (33%), Gaps = 35/287 (12%)

Query: 73  WLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGVES 125
             + ++ ++     +++ NS ++++                                + S
Sbjct: 2   DFLEQFLETVLAEKNVSANSLLAYKRDLQDFSDFLKSIQLQSSLAVTTKDIDSFIQHLLS 61

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +  +  S  + ++++R  + + + +  V  +   ++E P+  T+  +  + ++++    +
Sbjct: 62  KNLSFRSIARKISTLRQYYLFLLTENVVQPDLVTNIEVPRYSTKLPKILSIKEIKMLIDY 121

Query: 186 W-----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----NNIFS---IKTQKTGTII 233
                 +EG +       L  +GLR S+     +  L+            +   K     
Sbjct: 122 CFKDTTAEGIRTLAMICLLYSTGLRVSELVSVKITDLKFDHNTGKIKNHFVILGKGNKER 181

Query: 234 TVELPD----------GFMKLLAMTPIGKETFFINNDKQK---MNATQFSIWFKAKATKA 280
            V + D           +    +     K + ++   K K   M    F+I  K  A  A
Sbjct: 182 LVIMNDLTGDVISRYLPYRDFFSPFKNAKNSVYLFPSKAKQGYMTRQNFAILLKNAAINA 241

Query: 281 GV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           G+   N S H +R   A+   + GA    +    G   +   + YT 
Sbjct: 242 GLSPDNVSPHILRHSFASHLLEGGADLKVIQELLGHVDISSTQIYTH 288


>gi|261492284|ref|ZP_05988847.1| putative integrase/recombinase [Mannheimia haemolytica serotype A2
           str. BOVINE]
 gi|261312063|gb|EEY13203.1| putative integrase/recombinase [Mannheimia haemolytica serotype A2
           str. BOVINE]
          Length = 346

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 62/337 (18%), Positives = 105/337 (31%), Gaps = 31/337 (9%)

Query: 7   LPPFVTKERTRHGK----IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62
           LP  +   R + G       Y++   +G+   L           Y + L     K  + N
Sbjct: 12  LPQNLLCRRRKRGNGQIVEYYFYVLSNGKEKSLG-------TNKYEAVL--EAAKLNFEN 62

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIR 120
           S +        +   Y         A N+R S       + +  G+      KI  KHI 
Sbjct: 63  SKKSPVVLFIDVAKRYELEIVPTKKAKNTRQSNLQAIHWLCKFFGNPPAPLEKIEPKHIS 122

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA-INPCLSVERPKRKTEGIRPWTKEDM 179
             ++ RK TP+ A   +     ++  A    Y    +P   V++   K   +       +
Sbjct: 123 QYLQWRKDTPAVANIEVGLFNTIWNMAREWGYTTLPSPSQGVKKFPTKYREVYV-EDYIL 181

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239
            +   F  E        E     G R  D C     H+ + I  I  QKTG  +  E+  
Sbjct: 182 DKIYEFADERMAD--IIETAYLLGQRPIDICNIHRSHIYDGILHITQQKTGKKVRFEISG 239

Query: 240 GFMKLLA-MTPIGKETFFINNDKQKMNATQFSIWFKAKATKA---------GVNK-SAHG 288
              ++L        +  F N   +K+        FK    +A          + K     
Sbjct: 240 RLKEILDKRLGYESDWIFTNKWGKKLKRRSLGDHFKEIRERAMKAYPELADEIAKVQMRD 299

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           +R  +AT  +    T  +     G  +      Y + 
Sbjct: 300 MRAKAATDISLM-TTDEQAQKQLGHTSKRMTHHYIRK 335


>gi|240169740|ref|ZP_04748399.1| hypothetical protein MkanA1_10532 [Mycobacterium kansasii ATCC
           12478]
          Length = 373

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 62/356 (17%), Positives = 119/356 (33%), Gaps = 35/356 (9%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHES-TFIPAYMSALTGSTPKREYINSPRKKPT--TLKWLI 75
           G+    F    G  I  P    +     A+++        + +  +   KP   T     
Sbjct: 16  GRYQVRFTDPDGNYITAPKTFAARIDAEAWLTDRRREIDAKLWNPASVAKPDKITFGAYA 75

Query: 76  SEYRKSAHWGSL--AVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE-SRKHTPS 131
           S +              +R  +++  D  +I   G      IT K +R     +  + P+
Sbjct: 76  SAWLAGRQVAGRPIKQRTREHYQAILDDHLIETFGTRQLAAITPKAVREWYAVTLTNRPT 135

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT-EGIRPWTKEDMQQFKSFWSEGS 190
                 + +R +   AV  E +  NPC  V   + K    IRP + +++    +   E  
Sbjct: 136 MRSHAYSLLRTIMGSAVNDELIDTNPCRIVGAGRAKRVHKIRPASVDELATLTNAMPE-- 193

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK-----TQKTGTIITVELPDGFMK 243
           + RL      +  LR  ++       +   + +  ++     T      +T    D  ++
Sbjct: 194 RLRLMVTLASWCALRFGETVELRRSDIDLSDEMIRVRRAAVRTGGGSFQVTTPKSDAGVR 253

Query: 244 LLAMTP----------------IGKETFFINNDKQKMNATQFS-IWFKAKATKAGVNKSA 286
            +A+ P                      F   +   +  +  +  W+KA+      +   
Sbjct: 254 DVAIPPHIIPQIEDHLSKYVGSKRDSLLFAAQNGGHLQPSTLTRHWYKARKAANRDDLRW 313

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD-RIRLGIKNSRRISS 341
           H +R   A ++A  GA+  ELMA  G  T   A  Y   A  R R       ++++
Sbjct: 314 HDLRHSGAVLAAATGASLAELMARLGHSTPQAAMRYQHAAQGRDREIAALLSKLAA 369


>gi|312134834|ref|YP_004002172.1| integrase family protein [Caldicellulosiruptor owensensis OL]
 gi|311774885|gb|ADQ04372.1| integrase family protein [Caldicellulosiruptor owensensis OL]
          Length = 400

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 52/312 (16%), Positives = 101/312 (32%), Gaps = 48/312 (15%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVE---SR 126
           LK  +  +       +L  ++   +  Y ++ I    G +  +++  +H+++        
Sbjct: 74  LKDWLHTWLWEYKKQTLRPSTFKDYLCYIERHINPTIGHYKLKELRPEHLQTLYNVKYQE 133

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE-GIRPWTKEDMQQFKSF 185
             + S+  Q  T +      A++   V  N   +   PK K +  IR  + E+ Q+F + 
Sbjct: 134 GLSISTIKQIHTVLHSALDQALKNGLVNRNVSEATTLPKGKPKREIRILSLEEQQRFIAA 193

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQ---------------- 227
             E  + + AF   L SGLR  +      + +  ++    ++                  
Sbjct: 194 L-ERERLKTAFLVELASGLRIGELLALRWKDVNFKDGYIEVRRSLQRVRIFDGGNSKKTA 252

Query: 228 ------KTGT-IITVELPD------------GFMKLLAMTPI--GKETFFINNDKQKMNA 266
                 KT      V LP                + L    +    +  F       ++ 
Sbjct: 253 LAFQEPKTEAGKRIVPLPPVIIEELKQHRKKQLEEKLKAGALYEDNDLVFATELGTPIDP 312

Query: 267 TQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYT 323
             F   F     KAG++KS   H +R   AT   +A      +    G K +      Y+
Sbjct: 313 RNFERLFYRIREKAGLDKSVNFHALRHTYATRLLEANEHPKVVQELLGHKDISTTLNIYS 372

Query: 324 KGADRIRLGIKN 335
                I+     
Sbjct: 373 HVMPEIKKAAAM 384


>gi|168213629|ref|ZP_02639254.1| phage integrase [Clostridium perfringens CPE str. F4969]
 gi|170714780|gb|EDT26962.1| phage integrase [Clostridium perfringens CPE str. F4969]
          Length = 400

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 54/311 (17%), Positives = 93/311 (29%), Gaps = 51/311 (16%)

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRS 121
           P     TL      +  +     L  +S   +E  +   I     G      + T HI++
Sbjct: 71  PTDDKITLSQWFYTWLFTYRIHDLKPSSFERYEGLYRNYIEFSSLGKIKLIDLRTHHIQA 130

Query: 122 G----VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK---RKTEGIRPW 174
                V  +  +PS+       ++     A+++ Y+  N C  +  PK      E I  +
Sbjct: 131 YYNSLVAEKGKSPSTIKTINKCLKSCLNQALKEGYITKNYCTLITLPKGPETSKETINIF 190

Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSI-------- 224
           T E+ Q F       ++  + +   L +GLR  +        +  +NN   I        
Sbjct: 191 TLEEQQTFMREC-MNNKNGMLYILALGTGLRLGEILALKWTDINFKNNYIDINKAIKSTY 249

Query: 225 --------------KTQKTGTII-TVELPDGFMKLLAMTPI--------------GKETF 255
                         +  KT   I TV L +  ++LL                        
Sbjct: 250 KIDSKGNREFQIIEQQPKTKNSIRTVPLNNNLIELLQQHRKKQMIDRDSNIEIYFDNNLV 309

Query: 256 FINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWK 314
           F       +N +     FK    K  +     H +R   AT   + G     +    G  
Sbjct: 310 FSTPIGNYLNESNVRKTFKRILKKCNLKELRFHDLRHTFATRLFENGVPPKTVQTILGHS 369

Query: 315 TVDQA-ETYTK 324
            +      YT 
Sbjct: 370 DISTTLNIYTH 380


>gi|94310181|ref|YP_583391.1| phage integrase [Cupriavidus metallidurans CH34]
 gi|93354033|gb|ABF08122.1| tyrosine-based site-specific recombinase CMGI-2 [Cupriavidus
           metallidurans CH34]
          Length = 399

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 57/328 (17%), Positives = 104/328 (31%), Gaps = 36/328 (10%)

Query: 48  MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKS 106
             A            +  +K  T+  L  ++ +         +++  ++   D+ II   
Sbjct: 77  WLAEVRRGGDPGGAKAEARKAPTMAELCKKFMEDYSKKRNKPSTQDGYQGVIDRNIIPLL 136

Query: 107 GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA--INPCLSVERP 164
           G      +    I   +E   + P+ A +    +R +F  A    Y     NPC  V   
Sbjct: 137 GRKKVHDVKRPDIAGLMEKLAYKPTEANKTFGVLRKMFNLAEVWGYRPDGTNPCRHVPMY 196

Query: 165 KRKTEGIRPWTKEDMQQFKSFWS----------EGSQPRLAFEFLLYSGLRCSDSCRAGV 214
               E      +E ++ F+                   RL FEF      R S+ C    
Sbjct: 197 PPGKETRLIVDEEMVRIFRHLEKLEAEGLENYVIPLAIRLQFEFA----ARRSEICPLEW 252

Query: 215 Q--HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI----NNDKQKMN-AT 267
                +N        K G  I+  + +   +LL+  P  +   ++    N+  + +    
Sbjct: 253 SWLDFENRRVVWPDSKVGG-ISKPMSEEAYRLLSTAPRREGCPYVLPSPNDSTKHLTFGE 311

Query: 268 QFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
            +  W +        +   HG+R  S T  A++G      M   G KTV     Y    D
Sbjct: 312 HYGGWCRVLKAAGVPHVGTHGIRHRSTTDIANSGVPTKVGMKLTGHKTVAMFMHYVHTED 371

Query: 328 R-----------IRLGIKNSRRISSVVD 344
           +            R  I  +R+++    
Sbjct: 372 KPVRDAAELVASRRQAITGARQLAEAAA 399


>gi|308068307|ref|YP_003869912.1| Integrase [Paenibacillus polymyxa E681]
 gi|305857586|gb|ADM69374.1| Integrase [Paenibacillus polymyxa E681]
          Length = 375

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 60/357 (16%), Positives = 119/357 (33%), Gaps = 45/357 (12%)

Query: 9   PFVTKERTRHGKII-YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK 67
           PFV ++  +   +  YY   G  R+IR             M  L      +EYI   RK 
Sbjct: 4   PFVNEKTKKWDFVFGYYDETGKRRQIRRKGFKTKREANDKMIELQNDVKNKEYI---RKD 60

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITT---KHIRSGV 123
            TTL   +  +  +         +  + + YF + I  K G    +       ++  + +
Sbjct: 61  NTTLNEFMDYWLDNIRVHECGETTLYNNKLYFKNHIKPKLGKIKLQNFDLLKCQNFVNEL 120

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
             +    ++  +  T ++ +F  A+   ++  NP   V  PKR  + +  WT E +  F 
Sbjct: 121 YKKNFARNTIDRITTMVKKVFDKAIEYGFIKENPMRKVTLPKRVKKEMSIWTLEQVNHFL 180

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ--------KTGTII 233
               E  +    +   L +G+R  +      + +   +   +IK          K+G   
Sbjct: 181 QCTKE-DRYHCVYGLALLAGMRQGEILGLRWKDIDFKSKTITIKQTLAHYGTRIKSGAKT 239

Query: 234 T-----VELPDGFMKLLAMTPIGKETF-------------------FINNDKQKMNATQF 269
           T     + +P+  + +L       E +                   F   + + +     
Sbjct: 240 TAGERKISIPNQLIAILEEQRRLHEVYKVKWKREFGDAFIDMDIVIFNLKNGKTVFPANL 299

Query: 270 SIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
           S  +K     A +     H +R   AT+  +       +    G   +    +TY+ 
Sbjct: 300 SKAYKKDVISAKLPHIRFHDMRHTHATMLLEKKMNVKVISERLGHSKISVTLDTYSH 356


>gi|149376980|ref|ZP_01894734.1| tyrosine recombinase XerC [Marinobacter algicola DG893]
 gi|149358757|gb|EDM47227.1| tyrosine recombinase XerC [Marinobacter algicola DG893]
          Length = 317

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 34/268 (12%), Positives = 78/268 (29%), Gaps = 22/268 (8%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD------YRKITTKHIRSGVESRKHTP 130
            Y  S      +  +  S+     +                     +   + +       
Sbjct: 23  RYLASEKRH--SPRTCDSYRDDLKRFAVWVEHQPSPAWRSVTSHDLRRYVAQLSREGLGG 80

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
            S  + L+++R  +++ +R+     NP L +  PK      R    + +        +  
Sbjct: 81  RSIARHLSAIRRFYEYLLREHLAVDNPALDIRAPKSGKRLPRVADVDQLNHLLDAAPDDP 140

Query: 191 ---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELP 238
              +    FE +  SGLR S+     +Q +      ++    G    +          L 
Sbjct: 141 LEIRDLSMFELMYSSGLRLSELAGLDLQSVDVRGGEVRVLGKGRKERLLPVGRRALEALA 200

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATI 296
                  AM P G+   +++    +++               G ++    H +R   A+ 
Sbjct: 201 QWLEVRGAMAPDGENALYVSRRGDRLSTRSIQSRLSRWGMSKGADQRLHPHLLRHSFASH 260

Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324
             ++      +    G   +   + YT 
Sbjct: 261 MLESSGDLRAVQELLGHADIATTQVYTH 288


>gi|150397765|ref|YP_001328232.1| site-specific tyrosine recombinase XerD [Sinorhizobium medicae
           WSM419]
 gi|150029280|gb|ABR61397.1| tyrosine recombinase XerD [Sinorhizobium medicae WSM419]
          Length = 313

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 46/270 (17%), Positives = 88/270 (32%), Gaps = 30/270 (11%)

Query: 85  GSLAVNSRISFESYFDQII-----RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
              AVN+  S+E            R  G  D      +   S +       SS  + L++
Sbjct: 20  RGAAVNTLQSYERDLRDARSFLRSRGVGLVDASADDLRSYLSHLTGEGFKSSSQARRLSA 79

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KSFWSEG------ 189
           +R  +K+   +      P   ++ PK+     +  + ED+ +     ++   +G      
Sbjct: 80  LRQFYKFLYAEGLRTDEPTGILDAPKKNRALPKTLSIEDVTRLIGQAETEAEKGGEDAVA 139

Query: 190 -SQPRLAFEFLLYSGLRCSDSCRAGVQHL-QNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
             +     E L  +G+R S+        L Q+  F I   K      V L    ++ +  
Sbjct: 140 KLRMHALIELLYATGMRVSELVSLPASVLAQDGRFLIIRGKGNKERLVPLSQTAIRAMRA 199

Query: 248 --------TPIGKETFFINNDKQK--MNATQFSIWFKAKATKAGVNK---SAHGVRKFSA 294
                          +   +  +   +    F+   K+ A +AG+     S H +R   A
Sbjct: 200 YGQALHREADGADSPWLFPSYGRNGYLPRQVFARDLKSLAARAGIRVAAISPHVLRHAFA 259

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324
           +     GA    +    G   +   + YT 
Sbjct: 260 SHLLANGADLRAVQELLGHSDISTTQIYTH 289


>gi|254521772|ref|ZP_05133827.1| tyrosine recombinase XerC [Stenotrophomonas sp. SKA14]
 gi|219719363|gb|EED37888.1| tyrosine recombinase XerC [Stenotrophomonas sp. SKA14]
          Length = 296

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 34/255 (13%), Positives = 80/255 (31%), Gaps = 15/255 (5%)

Query: 85  GSLAVNSRISFESYFDQII-----RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
             ++ ++  ++    D +      R          T +   +    R  +  S  + L++
Sbjct: 15  RRMSAHTLDAYRRDLDALSVWAEPRGMAVEALDAETLRQFVADEHRRGLSAKSLQRRLSA 74

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS---QPRLAF 196
            R  + W ++   + ++P  +++ P+      +    ++  Q      EG    + R   
Sbjct: 75  CRSFYAWLLKHGRIEVSPAATLKAPRAPRRLPQVLDADEAVQLVELEPEGELGRRDRALL 134

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-----VELPDGFMKLLAMTPIG 251
           E    SGLR S+ C    + L      +     G             +      A +  G
Sbjct: 135 ELFYSSGLRLSEVCALTWRDLDFASGLVNVMGKGNRQRRVPFGRPAREALQAWRAESGGG 194

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMA 309
             +         ++     I  +  A + G+  +   H +R   A+   ++      +  
Sbjct: 195 PASPVFPGRNGPISQRAVQIRIRQLAQRQGLFKHVHPHMLRHSFASHILESSGDLRGVQE 254

Query: 310 TYGWKTVDQAETYTK 324
             G   +   + YT 
Sbjct: 255 LLGHADIATTQIYTH 269


>gi|153000209|ref|YP_001365890.1| phage integrase family protein [Shewanella baltica OS185]
 gi|151364827|gb|ABS07827.1| phage integrase family protein [Shewanella baltica OS185]
          Length = 287

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 42/267 (15%), Positives = 88/267 (32%), Gaps = 21/267 (7%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----SRK 127
             L+ ++         +  +R ++     Q+ +   +     IT + + +        R 
Sbjct: 2   SSLLQQFHDEISLRGYSARTRSAYLRAITQL-QHYANQPLDSITDEQLTAYFRYLNLERH 60

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           H+ ++    L  +   ++  + +++      + +  PKR  +  +  + +D+        
Sbjct: 61  HSRATLKLQLNGIHFFYEHVLGRDF-----TVQLSLPKRPHKLPQLLSCQDIAALL-CHC 114

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLL 245
           +  + R         GLR S+     V  +      +K    K      V +    + LL
Sbjct: 115 QNLKQRAMLALCYGCGLRVSELTHIKVADIDGQRQLLKVCQGKGAYDRLVIISPTLLTLL 174

Query: 246 A---MTPIGKETFFINNDK---QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS 297
                     E  F +        ++ + F       A  AG+    S H +R   AT  
Sbjct: 175 RQYWRAYHPVEWLFASTYHDVVYPLHESTFRKALAKAARLAGITKPCSPHSLRHAYATHQ 234

Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324
             AG   H+L A  G  ++   E Y  
Sbjct: 235 LQAGMPLHQLQAQLGHHSIKSTERYLH 261


>gi|86141544|ref|ZP_01060090.1| mobilizable transposon, int protein [Leeuwenhoekiella blandensis
           MED217]
 gi|85832103|gb|EAQ50558.1| mobilizable transposon, int protein [Leeuwenhoekiella blandensis
           MED217]
          Length = 398

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 39/204 (19%), Positives = 65/204 (31%), Gaps = 16/204 (7%)

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
            +F  ++R     A    Y   N   +V+            T E++Q       +    +
Sbjct: 192 NKFKAALRQ----AFEDGYTNRNYATAVKGFAMGETTREYLTYEELQNLAKAECKHQMLK 247

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGFMKLLAMTP 249
            AF F   +GLR SD  +     +++         K +KT       L D    +L    
Sbjct: 248 NAFLFSCLTGLRWSDVNKLTWSEVRDEEEGSRLVFKQKKTAAQEYQYLSDQARSILGDRK 307

Query: 250 IGKETFFIN-NDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHE 306
                 F         NA            +AG+ K  + H  R   A +  + GA  + 
Sbjct: 308 QENARVFQGLKYGAHFNAE-----ILRWCMRAGITKHITFHSARHTHAVLLLEHGADIYT 362

Query: 307 LMATYGWKTVDQAETYTKGADRIR 330
           +    G K +   + Y K  D  +
Sbjct: 363 VSKILGHKEIRTTQIYAKIVDTKK 386


>gi|300741394|ref|ZP_07071415.1| putative tyrosine recombinase XerC [Rothia dentocariosa M567]
 gi|300380579|gb|EFJ77141.1| putative tyrosine recombinase XerC [Rothia dentocariosa M567]
          Length = 339

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 52/293 (17%), Positives = 91/293 (31%), Gaps = 34/293 (11%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF---DYRKITTKHIRSGVESRKHTPSS 132
             Y +   +   +  +  S+ S         G         I  + IR  + S     ++
Sbjct: 45  ERYLRYEKYR--SEETIRSYISDLYGFFGFIGRRGISRVEDINLQLIREWLGSMHLKQNA 102

Query: 133 ---AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
                +  +++R  F WA  +E +  NP   +  PKR        ++E M       +  
Sbjct: 103 KTTVARRGSTLRTFFSWAHEEELITENPTRGMSTPKRDRHLPAVLSQEQMSSVLDTVALR 162

Query: 190 SQP--------RLA--FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELP 238
            +         RL    E L  SG+R S+     +  +     +++   K      V L 
Sbjct: 163 CRENPQDIRMLRLWAVLEVLYSSGMRISELTGLNLSSIDRANKTVRVIGKGNKERVVPLG 222

Query: 239 DGFMK------------LLAMTPIGKETFFINNDKQKMNATQFSIWFKA--KATKAGVNK 284
              MK             +A         FI    ++ N  Q         +  +     
Sbjct: 223 TPAMKVLSQWVKIGRPYWIAKGSRDVTALFIGPRGKRANPRQIREDISRILRTLEDTEVS 282

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
            AH +R  +AT   D GA    +    G  ++   + YT      RL    +R
Sbjct: 283 GAHVLRHSAATHLVDGGADIRTVQELLGHASLSTTQIYTH-VSMKRLADTYTR 334


>gi|254491767|ref|ZP_05104946.1| site-specific recombinase, phage integrase family protein
           [Methylophaga thiooxidans DMS010]
 gi|224463245|gb|EEF79515.1| site-specific recombinase, phage integrase family protein
           [Methylophaga thiooxydans DMS010]
          Length = 409

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 38/253 (15%), Positives = 81/253 (32%), Gaps = 39/253 (15%)

Query: 111 YRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170
                 +  RS       + S++ +++ +++ +F  AV  E +  NP   V++ K     
Sbjct: 145 VTAWDIESWRSKRHKDGLSASTSNRYIGTLKAMFNRAVEWEVIEQNPITKVKKQKSDNRA 204

Query: 171 -IRPWTKEDMQQFKS--------------FWSEG-------------SQPRLAFEFLLYS 202
            IR  + ++ ++ ++              F+++G                      L+ +
Sbjct: 205 IIRYLSPDEEERLRASLRSRDRRLTQSNPFYADGRFTRLETILGGFQDHVHPMVLLLMNT 264

Query: 203 GLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIITVELP----DGFMKLLAMTPIGKET 254
           G+R  +      Q +  N   I     T KTG    + L     +        T      
Sbjct: 265 GMRRGEMFNLRWQDVDLNNKRITIVGNTSKTGQTRYIPLNVEAFNVLQMWSKQTKRNAGH 324

Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGW 313
            F+  + ++         +K     A + +   H +R   A+    AG   + +    G 
Sbjct: 325 VFVGKNGKRFT--NIDKAWKVLLRDAKIHDFRLHDLRHHFASRLVSAGIDLNSVRELLGH 382

Query: 314 KTVDQAETYTKGA 326
             +     Y   A
Sbjct: 383 SDIKMTLRYAHLA 395


>gi|167462689|ref|ZP_02327778.1| DNA integration/recombination/invertion protein [Paenibacillus
           larvae subsp. larvae BRL-230010]
 gi|322384964|ref|ZP_08058620.1| phage integrase-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321150261|gb|EFX43768.1| phage integrase-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 410

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 46/312 (14%), Positives = 106/312 (33%), Gaps = 55/312 (17%)

Query: 86  SLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE------SRKHTP------SS 132
           +L+  +  ++ S+FD  I    G      I T H+ + ++      +RK          +
Sbjct: 93  NLSPLTFRNYVSHFDTHISPSLGHKHLGDIKTLHVVTFIDDLGKPGARKDGKEGRLSNGT 152

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
                  ++ + + A     + +NP + V++PK     I     ++++  +   +   +P
Sbjct: 153 IQYIYRVLKNILERAKEWGLIKVNPIIGVKKPKVGRPEIHF--YDEVEAQEVISALDKEP 210

Query: 193 RLAFEFLLYS---GLRCSDSCRAGVQHLQNNIFSIKTQK-----------------TGTI 232
           R    F+L S   G R  +        +  +  ++   K                   +I
Sbjct: 211 RTWRLFILGSMIGGFRRGELLALEWTDVDFDNMTLSINKSISLTVDGHAVEKEPKSKSSI 270

Query: 233 ITVELPDGFMKLLAM----------------TPIGKETFFINNDKQKMNATQFSIWFKAK 276
             V++P+ +M  L +                    K+  F     + +  T  + W+   
Sbjct: 271 RIVDMPEWYMDELKIHKHEWKKEKLFVGDKWRGGDKQYVFHAGFGKPLYHTYPTQWWGEF 330

Query: 277 ATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKT-VDQAETYTKGADRIRLGIK 334
             +  + +   H +R  SAT+  +AGA+   +    G       A+ Y       ++  +
Sbjct: 331 IKRHNLKRVRFHDLRHSSATLLIEAGASMKAIQERLGHSKHQTTADIYAHIT--KKVSRE 388

Query: 335 NSRRISSVVDSD 346
            + +       +
Sbjct: 389 TAEKFDKFAPKN 400


>gi|313898869|ref|ZP_07832402.1| site-specific recombinase, phage integrase family [Clostridium sp.
           HGF2]
 gi|312956333|gb|EFR37968.1| site-specific recombinase, phage integrase family [Clostridium sp.
           HGF2]
          Length = 368

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 66/358 (18%), Positives = 124/358 (34%), Gaps = 62/358 (17%)

Query: 16  TRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP----------- 64
            R+GK  +Y R     +++L           Y     G   K+E +              
Sbjct: 5   KRNGK--WYIR----GKVKLEDGS----FKDYHRVARGCKLKKEAMKIEDSFLAKYNEDL 54

Query: 65  ---RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121
              R    T K L   Y +    GS   ++  + +  FDQ+     D     I +K I+ 
Sbjct: 55  EQMRASNITFKELTEMYLREKQ-GSTKSSTLATDKYMFDQMNELY-DKRINLIRSKTIKD 112

Query: 122 GVESRKHTP----SSAIQFLTSMRVLFKWAVRQEYVAINPCLSV---ERPKRKTEGIRPW 174
            +ES  +TP    S   +  T +  LF +AV+Q  +  NP  S+   +RP    E ++ +
Sbjct: 113 FIESY-NTPEYKLSYVNKMRTYLNKLFSFAVKQNLIERNPVSSIPNFKRPDELKEEMQFY 171

Query: 175 TKEDMQQFKSFWSEGSQPR-LAFEFLLYSGLRCSDSCRAGVQH----------------- 216
           T ++ ++F   + +           L Y G+R  +      +                  
Sbjct: 172 TPDEWKRFVQAFPKDDIMYYTICCTLYYMGMRRGEVLALNRKDDVDIVKGTIRVNKTVSQ 231

Query: 217 -LQNNIFSIKTQKTGTI-ITVELPDG-------FMKLLAMTPIGKETFFINNDKQKMNAT 267
            +    + +   KT      +++P+        +++     P      F+    Q +   
Sbjct: 232 YVSGQRYVVTPPKTKNSYRVIKMPEEELQIMKKYLEWYDSCPGASADGFLFGMDQPIIPK 291

Query: 268 QFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             +  F   A  AG+ +   H +R   AT+  + GA    +    G    +  +TY+ 
Sbjct: 292 LLNKRFHRVADAAGLPQIRIHDLRHSHATLLINHGANIKAIADRLGNTVEEVLKTYSH 349


>gi|219646794|gb|ACL30946.1| integrase [Integrating expression vector pJEB403+drrA]
          Length = 332

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 53/319 (16%), Positives = 111/319 (34%), Gaps = 41/319 (12%)

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYR 112
              K+   ++   +  T KWL+           LA  +R  +  + ++ I    G+    
Sbjct: 24  DRAKKAAASAITLEEYTRKWLVER--------DLADGTRDLYSGHAERRIYPVLGEVAVT 75

Query: 113 KITTKHIRSGVESRKHT-PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
           ++T   +R+         P++       +R +   AV  + +A NPC  +E+       +
Sbjct: 76  EMTPALVRAWWAGMGRKHPTARRHAYNVLRAVMNTAVEDKLIAENPCR-IEQKAADERDV 134

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKT 229
              T E++    +        R+A   L ++ LR  +      + +        ++ ++ 
Sbjct: 135 EALTPEELDIVAA--EIFEHYRIAAYILAWTSLRFGELIELRRKDIVHDGMTMKLRVRRG 192

Query: 230 GTII----------------TVELPDGFMKLLAMTPIGK-------ETFFINN-DKQKMN 265
            + +                 V +P    +++      +       E F +      +++
Sbjct: 193 ASRVGNKIVVGNAKTVRSKRPVTVPPHVAEMIRAHMKDRTKMNKGPEAFLVTTTQGNRLS 252

Query: 266 ATQFSIWFKA-KATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            + F+   K   A         H +R   AT +A AGAT  ELMA  G  T   A  Y  
Sbjct: 253 KSAFTKSLKRGYAKIGRPELRIHDLRAVGATFAAQAGATTKELMARLGHTTPRMAMKYQM 312

Query: 325 GAD-RIRLGIKNSRRISSV 342
            ++ R     +   +++  
Sbjct: 313 ASEARDEAIAEAMSKLAKT 331


>gi|205373364|ref|ZP_03226168.1| tyrosine recombinase xerC [Bacillus coahuilensis m4-4]
          Length = 250

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 32/232 (13%), Positives = 80/232 (34%), Gaps = 16/232 (6%)

Query: 109 FDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168
            D   +  +   + +  +K+  S+  + ++S++  +K+  +++ +  NP   V  PK++ 
Sbjct: 2   VDIEYLDARLYLTDLYDKKYARSTVSRKVSSLKSFYKFLTKEDKLDENPFSLVFHPKQEK 61

Query: 169 EGIRPWTKEDMQQFKSFWSEGSQ----PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
                + +E++++        +          E L  +G+R S+     ++ +  +  ++
Sbjct: 62  RLPNFFYEEEIERLFDACKGDTHKDIRNLALLELLYATGIRVSECSNLSLKDIDFSFHTV 121

Query: 225 -KTQKTGTIITVELPDGFMKLLAM---------TPIGKETFFINNDKQKMNATQFSIWFK 274
             T K      V       + +                +  F+N     +          
Sbjct: 122 LVTGKGRKERYVPFGTYASEAIKRYLDHTRHVLVKGEHQQLFVNLKGGPLTDRGIRHILN 181

Query: 275 AKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              ++A +      H +R   AT     GA    +    G   +   +TYT 
Sbjct: 182 DVISRASLTHKIHPHMLRHTFATHLLSNGADLRSVQELLGHSHLSSTQTYTH 233


>gi|237729903|ref|ZP_04560384.1| phage integrase [Citrobacter sp. 30_2]
 gi|226908509|gb|EEH94427.1| phage integrase [Citrobacter sp. 30_2]
          Length = 284

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 43/258 (16%), Positives = 95/258 (36%), Gaps = 18/258 (6%)

Query: 82  AHWGSLAVNSRISFESYF----DQIIRKSGDFDYRKITTKHIRSGVESR-KHTPSSAIQF 136
             +   A+  + S+ S      + I+ + G+ +  +I  + I + +       PS+  + 
Sbjct: 8   PDYIKYALIHKKSYTSDLSKVKNYILPRLGNAELHEINRRDIATYIHGLDGLKPSTRNRH 67

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA- 195
           L  ++ +F WAV   Y+ ++P   ++  +      R    E+   F        +     
Sbjct: 68  LALLKAVFSWAVEYNYLEVSPAAGIKAFREPASLRRAMEPEEFSVFIRVLKAEIKDENRD 127

Query: 196 ----FEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTP 249
                  L ++G+R  ++  A ++ L    N   ++  K+G    V L    M+++    
Sbjct: 128 TLQLLGLLAFTGMRLGEARSACIEDLNLTRNTLFLRDTKSGDSRLVPLCGEAMEIVCAQL 187

Query: 250 IGK---ETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAH 305
           +        F +    K+   +     K    KAG+   + H +R  + +    A    +
Sbjct: 188 MKHGNQGLLFRSAHGTKVAEPRR--LMKKICEKAGIVPFTIHELRYTAGSAMLAATRDLY 245

Query: 306 ELMATYGWKTVDQAETYT 323
            +    G K +  +E Y 
Sbjct: 246 AVKRFLGHKCLSTSERYA 263


>gi|78777445|ref|YP_393760.1| Phage integrase [Sulfurimonas denitrificans DSM 1251]
 gi|78497985|gb|ABB44525.1| tyrosine recombinase XerD subunit [Sulfurimonas denitrificans DSM
           1251]
          Length = 278

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 37/252 (14%), Positives = 82/252 (32%), Gaps = 17/252 (6%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLF 144
            +L+  S  ++     QI     +     + +K + + +   K+   +  + L+S+   F
Sbjct: 16  KALSRKSVDAYTCDLKQIELAL-NKPLISLDSKTLFNLLSEYKNK-RTLNRKLSSVNAFF 73

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLAFEFLL 200
            +  + ++V       V+  K      +  + + +Q   S        G +      FL 
Sbjct: 74  DFCYKNQFVDE--KKKVKFSKIPKLLPKFLSYQQIQNALSQVDRSSVLGLRDYAMIIFLY 131

Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM----TPIGKETFF 256
            +G R S+      + ++     I+  K      V +       +          KE  +
Sbjct: 132 ATGARISECLALRREDIEGEWLHIRHAKGEKERIVPIAFVAKTAVDAYMNELKKTKEYVW 191

Query: 257 INNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTV 316
            N   +K++        +       +  S H +R   AT     GA    +    G  ++
Sbjct: 192 SNYKGEKLSRISAYKITQKY-----LGVSPHVLRHSYATALIAGGADLRVVQELLGHSSL 246

Query: 317 DQAETYTKGADR 328
              + YT    +
Sbjct: 247 LTTQIYTHIQKQ 258


>gi|187735871|ref|YP_001877983.1| integrase family protein [Akkermansia muciniphila ATCC BAA-835]
 gi|187425923|gb|ACD05202.1| integrase family protein [Akkermansia muciniphila ATCC BAA-835]
          Length = 416

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 59/319 (18%), Positives = 106/319 (33%), Gaps = 43/319 (13%)

Query: 44  IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII 103
           +PAY      S    E      + P+   WL    R+      L   S  +++  FD+  
Sbjct: 83  LPAYQLRRAISALSTELTGESMEMPSVKLWLDDHMRRITR-NGLKPASIANYKQAFDKFR 141

Query: 104 RKSGD---FDYRKITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158
              G+       +IT   +         + +PS+A   LT +   F+ AV  + +  NP 
Sbjct: 142 ASMGERINLPLDRITPLMLDDFKNHLLSRVSPSTANIALTLVSAAFQAAVDYKIIETNPF 201

Query: 159 LSVERP-KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG-LRCSDSCRAGVQH 216
            ++ +P K K    R +  E++++  +      + R   +  LY+G  R  D        
Sbjct: 202 TAITKPHKGKAVKRRKFELEELEKVMAAC--NPEWRSMVKTCLYTGGQRLGDVATLRWSQ 259

Query: 217 LQN--NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFIN--------NDKQKMNA 266
           +     +  + TQK G  + + +     K L          F++        +      +
Sbjct: 260 VDEKRGVIRMTTQKKGKPLMIPIFPALKKHLQQRKKEAPGDFLHPECANIFESKGSGRLS 319

Query: 267 TQFSIWF--------------KAKATKAGVN---------KSAHGVRKFSATISADAGAT 303
             FS                 K    + G            S H +R  + T+  DAG  
Sbjct: 320 NIFSHILYQCGLIAKDPLAAGKKYKKQEGNGTETRRHVNELSFHSLRYTATTMLHDAGVP 379

Query: 304 AHELMATYGWKTVDQAETY 322
              + A  G  + +  E Y
Sbjct: 380 PALVQAIVGHDSREVHEGY 398


>gi|127511928|ref|YP_001093125.1| phage integrase family protein [Shewanella loihica PV-4]
 gi|126637223|gb|ABO22866.1| phage integrase family protein [Shewanella loihica PV-4]
          Length = 324

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 67/337 (19%), Positives = 117/337 (34%), Gaps = 39/337 (11%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
           LPP V +   R G   YYF    G+ I+L   +    +  Y + + G             
Sbjct: 11  LPPKVYQ---RSGS--YYFVDKDGKWIKLASSY-PEAMVKY-AEIVGDVGNL-------- 55

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
              T+  L+  Y +         + + +  +    +    GD    ++T +HI   ++ R
Sbjct: 56  --VTVSDLLDRYLREVAPLKAEASYKSNL-AQSKFLRAGLGDIRVDELTPRHIYQYMDVR 112

Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
            K   +   + +  +  + K+A+R   +  NPC SV R K +T   R    ++ + F+ F
Sbjct: 113 GKKGKTQTNREIAMLSHMLKYAIRWGLIDHNPCRSVMRFK-ETPRDRYIEDKEYKAFRDF 171

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
              G       +F L +GLR SD  +     L+ +   +   KT   I +   D     +
Sbjct: 172 --AGPLIAAYMDFKLLTGLRKSDILKLRRDALKEDGIHVLINKTKRKIIISWSDHLRAAV 229

Query: 246 AM-----TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK------SAHGVRKFSA 294
                   PI     F     Q      FS  ++ K  KA          + H VR  + 
Sbjct: 230 QAIKDLPRPINSIYLFSTRKGQPYTTDGFSSIWQRKMVKAMEKGILTERFTDHDVRAKTG 289

Query: 295 TISADAGATAHELMATYGWKTVDQAE-TYTKGADRIR 330
           + +    AT                +  Y +    +R
Sbjct: 290 SDAELEHAT-----RLLAHLDAKVTQKHYRRKTAVVR 321


>gi|198276324|ref|ZP_03208855.1| hypothetical protein BACPLE_02519 [Bacteroides plebeius DSM 17135]
 gi|198270766|gb|EDY95036.1| hypothetical protein BACPLE_02519 [Bacteroides plebeius DSM 17135]
          Length = 376

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 84/232 (36%), Gaps = 23/232 (9%)

Query: 127 KHTPSSA---IQFLTSMRVLFKWAVRQEYVAINP---CLSVERPKRKTEGIRPWTKEDMQ 180
           K  P +A     +          AVR + +  NP       E+PK         T E+++
Sbjct: 154 KGKPIAASTRNTYYQIFNGALNAAVRAKRLLRNPFNEMEKSEKPKMPESVRSYMTIEEVR 213

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT----QKTGTIITVE 236
              +   +  + + A+ F  + GLR SD      +++  +    +     QKT   I + 
Sbjct: 214 ALIATPMQEGRVKNAYLFSCFCGLRISDIVGLKWKNVFVDNGQYRLAVAMQKTKEPIYLP 273

Query: 237 LPDGFMKLL--AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292
           L +  +K +         +  F          +  + + +  A  AG+ K  + H  R  
Sbjct: 274 LSNEALKWMPEREDKAADDPVFNL-------PSNINQYLRPWAEAAGITKRFTFHTARHT 326

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
            AT+    GA  + +    G  +V   + Y K  ++ +   +    ++ + D
Sbjct: 327 FATMMLTLGADLYTVSKLLGHTSVRMTQVYAKIINQKK--DEAVNLVNGLFD 376


>gi|315633490|ref|ZP_07888780.1| tyrosine recombinase XerC [Aggregatibacter segnis ATCC 33393]
 gi|315477532|gb|EFU68274.1| tyrosine recombinase XerC [Aggregatibacter segnis ATCC 33393]
          Length = 296

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 36/261 (13%), Positives = 89/261 (34%), Gaps = 22/261 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRK-----ITTKHIRSGVESRKH--TPSSAIQFL 137
             ++ ++  +++    ++I    D   ++     ++         S++      S    L
Sbjct: 16  RQVSPHTLTNYQHQLVRVIAILQDAGIQQWQQVTLSVVRYVLAQSSKQDGLKEKSLALRL 75

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS---FWSEGSQPRL 194
           +++R    + V Q  + +NP + V  PK+     +   ++ +Q   +         + R 
Sbjct: 76  SALRRFLSYLVYQGQLKVNPAVGVSAPKQPKHLPKNIDRDQIQLLLANDSKEPIDIRDRA 135

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLL 245
             E    SGLR S+     +  +   +  ++    G    +          +       L
Sbjct: 136 MIELFYSSGLRLSELQGLNLNSINLRVREVRVIGKGNKERIVPLGRYASHAIQQWLKVRL 195

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGAT 303
              P   +  F++    +M+     +  +    + G+N   + H +R   AT   +A + 
Sbjct: 196 LFNP-KDDALFVSQLGNRMSTRTIQMRLERWGIRQGLNSHLNPHKLRHSFATHMLEASSD 254

Query: 304 AHELMATYGWKTVDQAETYTK 324
              +    G   +   + YT 
Sbjct: 255 LRAVQELLGHSHLSTTQIYTH 275


>gi|218129441|ref|ZP_03458245.1| hypothetical protein BACEGG_01018 [Bacteroides eggerthii DSM 20697]
 gi|254881363|ref|ZP_05254073.1| tyrosine type site-specific recombinase [Bacteroides sp. 4_3_47FAA]
 gi|313145864|ref|ZP_07808057.1| integrase [Bacteroides fragilis 3_1_12]
 gi|317476187|ref|ZP_07935438.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
 gi|217988171|gb|EEC54494.1| hypothetical protein BACEGG_01018 [Bacteroides eggerthii DSM 20697]
 gi|254834156|gb|EET14465.1| tyrosine type site-specific recombinase [Bacteroides sp. 4_3_47FAA]
 gi|313134631|gb|EFR51991.1| integrase [Bacteroides fragilis 3_1_12]
 gi|316907598|gb|EFV29301.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
          Length = 376

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 84/232 (36%), Gaps = 23/232 (9%)

Query: 127 KHTPSSA---IQFLTSMRVLFKWAVRQEYVAINP---CLSVERPKRKTEGIRPWTKEDMQ 180
           K  P +A     +          AVR + +  NP       E+PK         T E+++
Sbjct: 154 KGKPIAASTRNTYYQIFNGALNAAVRAKRLLRNPFNEMEKSEKPKMPESVRSYMTIEEVR 213

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT----QKTGTIITVE 236
              +   +  + + A+ F  + GLR SD      +++  +    +     QKT   I + 
Sbjct: 214 ALIATPMQEGRVKNAYLFSCFCGLRISDIVGLKWKNVFVDNGQYRLAVAMQKTKEPIYLP 273

Query: 237 LPDGFMKLL--AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292
           L +  +K +         +  F          +  + + +  A  AG+ K  + H  R  
Sbjct: 274 LSNEALKWMPEREDKAADDPVFNL-------PSNINQYLRPWAEAAGITKRFTFHTARHT 326

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
            AT+    GA  + +    G  +V   + Y K  ++ +   +    ++ + D
Sbjct: 327 FATMMLTLGADLYTVSKLLGHTSVRMTQVYAKIINQKK--DEAVNLVNGLFD 376


>gi|229918620|ref|YP_002887266.1| integrase family protein [Exiguobacterium sp. AT1b]
 gi|229470049|gb|ACQ71821.1| integrase family protein [Exiguobacterium sp. AT1b]
          Length = 293

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 43/262 (16%), Positives = 88/262 (33%), Gaps = 25/262 (9%)

Query: 85  GSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMR 141
             L+ +++ S+E   D      + +    Y   T +     +  ++   S+  Q ++  +
Sbjct: 18  RRLSPHTKRSYEQTLDQYAAYCQSTHQDPYDAQTARRYLYVLYEKQLAASTVSQKVSCFK 77

Query: 142 VLFKWAVRQEYVAINP-CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL------ 194
              K+  R++     P    +  PK+K          +++Q     S    P L      
Sbjct: 78  QFGKFMAREQGGE--PLFHDLTSPKKKQSLPTFAVPTEVEQLLEAASRQDDPFLQARDVA 135

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM------ 247
             E L  +G+R ++ C   +      +  +    K      V +    ++ L        
Sbjct: 136 IIEVLYGTGIRVAELCGMNLSSFDEVLSFVHVMGKGKKERYVPIGQYAVQALQRYIELRK 195

Query: 248 ---TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302
               P      F++    +M   Q     K     +GV+K  + H +R   AT   + GA
Sbjct: 196 GVGLPTET-ALFLSQKGNRMTTDQIRYVMKRLRKDSGVHKPLTPHSLRHSFATDLLERGA 254

Query: 303 TAHELMATYGWKTVDQAETYTK 324
               +    G +++     YT 
Sbjct: 255 DLRAVQELLGHESLSTTGRYTH 276


>gi|158339285|ref|YP_001520462.1| phage integrase [Acaryochloris marina MBIC11017]
 gi|158309526|gb|ABW31143.1| phage integrase [Acaryochloris marina MBIC11017]
          Length = 335

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 53/290 (18%), Positives = 105/290 (36%), Gaps = 32/290 (11%)

Query: 62  NSPRKKPTTLKWL-ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
             P+  P  L+W+ + E+ +S     ++ N+R ++E    Q +    D  + +IT + + 
Sbjct: 27  QPPKTTPADLRWMRVEEFMRS---REISSNTRKAYERDLKQFMD-WTDKGWHEITARDLD 82

Query: 121 SGVESRKHTP---------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
                 K  P         ++  + L +++  FKW   ++Y+  +P L +E+ K      
Sbjct: 83  RYKNYLKVEPNQRGQLRKNATINRNLAALQGFFKWLTVRDYITKDPTLLLEKLKSDPVLP 142

Query: 172 RPWTKEDMQQ-FKSFWSEGSQPRLAFEF--LLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
           + ++++++   +++    G           L+  GLR S+  R  V        +I+  K
Sbjct: 143 QEFSQDEVDNLYQAICDRGFHAFRDRALLHLIDHGLRASEIHRLNVGDYDGQRITIRVAK 202

Query: 229 TGTIITVELPDGFMKLLAMTP----------IGKETFFI----NNDKQKMNATQFSIWFK 274
             ++ TV L     K +                    F+    N+  Q++        FK
Sbjct: 203 ADSVGTVPLLKKARKAIDQYKQWREQQGDALGNDSPLFVSHSNNSKGQRLQYWGIYKIFK 262

Query: 275 AKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           A A  A V N   H  R   AT        +          +      Y+
Sbjct: 263 AIAEIAEVENAHPHRGRHTLATRLVMKDMDSVLARRITRHASEQSFVRYS 312


>gi|307942817|ref|ZP_07658162.1| tyrosine recombinase XerC [Roseibium sp. TrichSKD4]
 gi|307773613|gb|EFO32829.1| tyrosine recombinase XerC [Roseibium sp. TrichSKD4]
          Length = 320

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 45/273 (16%), Positives = 89/273 (32%), Gaps = 30/273 (10%)

Query: 82  AHWGSLAVNSRISFESYFDQIIRKS-GD-------FDYRKITTKHIRSGVESR----KHT 129
           A    LA  + +S+E    Q +R   G         D  ++     RS +  R    K  
Sbjct: 29  ADERRLADKTLVSYERDVRQFLRFLTGHLGGAPCVKDLGELRPADYRSFLAKRRQADKAG 88

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-------F 182
             S  + L+ +R   ++  ++  +      +V  P+      +P T  D ++        
Sbjct: 89  SRSLARGLSGVRSFLRFLEKRGELNAAAIGAVRPPRIAQSLPKPLTVPDAEEIVSGDLGL 148

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRA-GVQHLQNNIFSIK-TQKTGTIITVELPDG 240
           +S     ++       L   GLR S++    G    + +  +++ T K G    V +   
Sbjct: 149 ESETWIETRNMAVLTLLYGCGLRISEALSLTGRTAPKGDARTMRITGKGGKERLVPMLPV 208

Query: 241 FMKLLAM-------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRK 291
             + +                 F+      +N        +   +  G+  SA  H +R 
Sbjct: 209 VTQAIETYIAQCPYPITANGPLFLGARGGALNPRLIQKAMEKMRSALGLPASATPHALRH 268

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK 324
             AT     G     +    G  ++   + YT+
Sbjct: 269 SFATHLLAGGGDLRTIQELMGHASLSSTQIYTQ 301


>gi|307546851|ref|YP_003899330.1| integrase/recombinase XerC [Halomonas elongata DSM 2581]
 gi|307218875|emb|CBV44145.1| K03733 integrase/recombinase XerC [Halomonas elongata DSM 2581]
          Length = 308

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 37/257 (14%), Positives = 79/257 (30%), Gaps = 21/257 (8%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRKHTPSSAIQFLTSMR 141
           +  +  ++      ++      D            +    G  SR   P S  +   ++ 
Sbjct: 27  SPATVDAYRRDLAALLDFLDRHDIGDPAALDAALLRRFLGGERSRGLAPRSLARRRAALS 86

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFE 197
              +  +   Y+  NP   V  P+   +  RP   + + +F     +GS    + +   E
Sbjct: 87  RFAEHLMACGYLDHNPVSLVRTPRVPRDLPRPVDVDALARFLDTPHDGSPLACRDQAMLE 146

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE--------LPDGFMKLLAMTP 249
               SGLR ++     +  +      +   K G    V         L D      A+  
Sbjct: 147 LFYSSGLRLAELAALDLDDIHARRVRV-LGKGGKPRQVPVGRRADQALTDWLSLRGALAA 205

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHEL 307
            G+   F+     ++         +  A   G+  +   H +R   A+   ++      +
Sbjct: 206 DGEPALFVGARGNRLGHRAIQQRMRQLALTRGLAEHLHPHRLRHSFASHLLESSQDLRAV 265

Query: 308 MATYGWKTVDQAETYTK 324
               G   +   + YT+
Sbjct: 266 QELLGHANLSTTQVYTR 282


>gi|301312479|ref|ZP_07218393.1| tyrosine recombinase XerD [Bacteroides sp. 20_3]
 gi|300829545|gb|EFK60201.1| tyrosine recombinase XerD [Bacteroides sp. 20_3]
          Length = 314

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 46/306 (15%), Positives = 106/306 (34%), Gaps = 36/306 (11%)

Query: 67  KPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
           + T ++ +IS++     +  +L   +  ++ S      R   +     +  +  +  +++
Sbjct: 5   RKTAVEQVISDFLFHCQYEKNLNEKTIYAYRSDLYMFNRYIHELYPSVVFEQVSKDMLKT 64

Query: 126 R-----KHTPSSAIQFLTSMRVLFKWAVRQEYVAI-NPCLSVE-RPKRKTEGIRPWTKED 178
                  + P +  + L S++ LF +    E+    NP   +  R K         T  +
Sbjct: 65  YLQHISTYKPKTVKRKLASLKALFNY-YDFEHDDFLNPFRKLRIRFKEPYVLPTVMTCNE 123

Query: 179 MQQFKSF---------------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223
           +++   +               +   ++     E L  +G+R S+ C      +     +
Sbjct: 124 VKEILKYLYKLRADNPDTGGYAYKAQTRDIAVVELLFATGIRVSELCELSCDAVDLKQAT 183

Query: 224 IKTQKTGTIITV------ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKA 277
           IK    G+   V      E+     +   +    K  FFIN    ++++    +  K   
Sbjct: 184 IKVFGKGSKERVIQICSVEVLKILRQYQRLFAPSK-CFFINRLGNRLSSQSVRLLIKRCR 242

Query: 278 TKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK---GADRIRLG 332
            + G+ K  + H  R   AT+  +       +    G  ++   + YT       +  L 
Sbjct: 243 EEIGIGKKITPHTFRHTFATLLLEEDVDIKYIQNLLGHSSITTTQIYTHVNMNKQKKILS 302

Query: 333 IKNSRR 338
            K+ R+
Sbjct: 303 SKHPRK 308


>gi|294085314|ref|YP_003552074.1| site-specific recombinase, phage integrase family [Candidatus
           Puniceispirillum marinum IMCC1322]
 gi|292664889|gb|ADE39990.1| site-specific recombinase, phage integrase family [Candidatus
           Puniceispirillum marinum IMCC1322]
          Length = 420

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 48/266 (18%), Positives = 96/266 (36%), Gaps = 28/266 (10%)

Query: 85  GSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL 143
            +    +       ++  I+      D + +T +++R    +    P +A + L  + V+
Sbjct: 127 HNWKPVTLAGSRRAYEAYIVPFFTGMDVQTVTPENVRRWFAALHDRPGAANRSLALLSVM 186

Query: 144 FKWAVRQEYVA--INPCLSVERPKRKTEGIRPWTKED---MQQFKSFWSEGSQPRLAFE- 197
            + A R  Y     NPC  + R + + +  R  + ++   + +  +     +  R+A   
Sbjct: 187 MREAERYGYRDANTNPCKGMRRYRLRKQE-RFLSDDEYRHLGRMLAAQESVTPLRVAMIR 245

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNI-----FSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252
            LL +G R S+       + +N         +   KTG  + + L D    +L   P   
Sbjct: 246 LLLLTGCRKSEIRTLKWCYYRNGRNGRKHLFLPDSKTGQKM-IYLSDPARAILDKIPRKS 304

Query: 253 ETFFINNDKQKMNATQ----------FSIWFKAKATKAGV-NKSAHGVRKFSATISADAG 301
              F    K+K    +          F   F+   T+AG+ +   H +R   A+++   G
Sbjct: 305 AWVFPTTIKRKRGRPRKDAVPFFDIDFWNIFR---TRAGLDDVRLHDLRHSYASLAIRNG 361

Query: 302 ATAHELMATYGWKTVDQAETYTKGAD 327
            +   L    G    +    YT   D
Sbjct: 362 VSLVTLGRLVGHVDPETTLQYTHLTD 387


>gi|291522352|emb|CBK80645.1| Site-specific recombinase XerD [Coprococcus catus GD/7]
          Length = 159

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 45/142 (31%), Gaps = 12/142 (8%)

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE--------LPDGFMKLLA 246
             E +  +G+R S+     +  +      I+  + G    +         L     +   
Sbjct: 1   MLELMYATGIRVSELVSLTIDDINVQAGYIRCSERGRERIIPIGSVARISLRQYLKQARP 60

Query: 247 MTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGA 302
                  +   F N   Q M+   F    K  A KAG+  + + H +R   A    + GA
Sbjct: 61  AMISDDSSAILFPNYSGQPMSRQGFWKILKQYAAKAGIESDITPHTLRHSFAAHLLENGA 120

Query: 303 TAHELMATYGWKTVDQAETYTK 324
               +    G   +   + Y K
Sbjct: 121 DLRSVQEMLGHSDISTTQIYLK 142


>gi|291288449|ref|YP_003505265.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809]
 gi|290885609|gb|ADD69309.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809]
          Length = 397

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 66/363 (18%), Positives = 130/363 (35%), Gaps = 28/363 (7%)

Query: 7   LPPFVTKERTRHGKII-YYFRKGHGRRIRLPYPHES--TFIPAYMSALTGSTPKREYINS 63
           L  F  +   R  K     +R   GR+  +     S  T   A   A T  T  +   + 
Sbjct: 32  LKGFALRVTGRPTKSYVIRYRNEEGRQKVMTLFRASNITADEARRKARTKLTEAQGGTDI 91

Query: 64  PRKKPTTLKWLI-----SEYRKSAHWGSLAVNSRISFESYFDQII-RKSGDFDYRKITTK 117
            ++K    K ++       Y +     + +  +  + ESY +++I    G+   + IT +
Sbjct: 92  LKEKQEKRKAMLFSEFAEIYLEHHARPNNSAGTVKTNESYLERLILPAFGNRPLKSITPE 151

Query: 118 HIRSGVES-RKHTPSSAIQFLTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPW 174
                     K TP  A +    +R +F  A    Y+    NPC+  ++ K +T   R  
Sbjct: 152 DTAKLHHKIGKSTPVQANRVHALLRKMFTLAETWRYIPQNTNPCVHTQKYK-ETPVQRFL 210

Query: 175 TKEDMQQFKSFWSEGSQ----PRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQK 228
           T ++ ++ +    +  +      LA   L+Y+G R  +      ++++N  N+  I   K
Sbjct: 211 TPDETKRLEDVLEKYEEKYYSAVLALRLLMYTGCRKEEILTLKWENIKNELNLLHIPKSK 270

Query: 229 TGT---IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NK 284
           TG     ++ E+ D       +        F N+             ++    +AG+ + 
Sbjct: 271 TGEKNVPVSHEVLDMLENAYKVNEYVCFGKFENSR-----LIGLQKIWERLRKEAGLEDV 325

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
             H +R   A+ +   G     +    G K +   E Y        L    ++  +S+  
Sbjct: 326 RIHDLRHSFASTAISGGINIEFISKLLGHKRITTTEYYYAHVQNDPLHEAANKIATSITT 385

Query: 345 SDD 347
           +  
Sbjct: 386 ARK 388


>gi|225677009|ref|ZP_03788023.1| site-specific recombinase, phage integrase [Wolbachia endosymbiont
           of Muscidifurax uniraptor]
 gi|225590948|gb|EEH12161.1| site-specific recombinase, phage integrase [Wolbachia endosymbiont
           of Muscidifurax uniraptor]
          Length = 310

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 42/289 (14%), Positives = 90/289 (31%), Gaps = 40/289 (13%)

Query: 71  LKWLISEYRKSAHW----GSLAVNSRISFESYFDQIIRKS-----GDFDYRKITT----- 116
           L  +I ++     W     S + N+  S+      +I        G+ +   +       
Sbjct: 3   LGSIIEKWY---EWLRCNRSYSPNTLESYMRDLKDLISFLNTHIGGEVNVGTLEKLSVPE 59

Query: 117 -KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL-SVERPKRKTEGIRPW 174
            +   +   +R     S  + L+ +R  FK+ ++  Y   N  + S+ RP ++    +  
Sbjct: 60  LRSWLTSRYARGVNARSNARALSVIRNFFKY-IKNNYNIDNEAVFSLSRPIQRRTLPKAL 118

Query: 175 TKEDMQQFKSFWSEGS--------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226
           +  +++                  +       L  +GLR S++    V  + N    I T
Sbjct: 119 SIPNIKTLLKEMKLSDLGESWVVKREIAIIVLLYSTGLRISEALNLRVSDINNESL-IVT 177

Query: 227 QKTGTIITVELPDGF----MKLLAMTP-----IGKETFFINNDKQKMNATQFSIWFKAKA 277
            K      V +         + +   P        +  F+    +K+  T  +   +   
Sbjct: 178 GKGDKQRQVFILPVVKKCIQEYVKTCPYLGINDEAQYLFLGVRGKKLGRTYVANRLQKIR 237

Query: 278 TKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
               +    S H  R   AT           +    G  +++  + YT 
Sbjct: 238 RILNLPEILSPHAFRHSFATHLLQEDIDIRSIQQLLGHSSLETTQVYTH 286


>gi|163748706|ref|ZP_02155959.1| integrase/recombinase XerC [Shewanella benthica KT99]
 gi|161331816|gb|EDQ02620.1| integrase/recombinase XerC [Shewanella benthica KT99]
          Length = 308

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 32/269 (11%), Positives = 84/269 (31%), Gaps = 23/269 (8%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--------FDYRKITTKHIRSGVESRK 127
             Y +S     L+ ++  ++     ++  K  +         +      +H+   +  + 
Sbjct: 10  ESYCRSER--QLSAHTVRNYLYELHRVSAKLEENACLSFLWSEVSHEQIQHVLGQLHRQG 67

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            +P S    L++++    + + +  +  NP  S+  PK+     +    + +       +
Sbjct: 68  LSPRSLSLTLSAVKQFCDFLLGEGVINANPAKSLSAPKQNKPLPKNMDLDSVTHLLEIDA 127

Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243
           +     + +   E    SGLR ++     V  ++          K      V +    ++
Sbjct: 128 DDLLSVRDKAIMELFYSSGLRLAELAALDVLAIRFAERQVKVLGKGSKERIVPVGRCAIQ 187

Query: 244 LLAMTPI-------GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSA 294
            +              E  F+    +++              +  +N     H +R   A
Sbjct: 188 AIQAWLALRESILCQDEALFVTAKGKRLAHRSIQARLAKWGQEQALNMRVHPHKLRHSFA 247

Query: 295 TISADAGATAHELMATYGWKTVDQAETYT 323
           T   ++ A    +    G   +   + YT
Sbjct: 248 THMLESSADLRAVQELLGHANLSTTQIYT 276


>gi|154509161|ref|ZP_02044803.1| hypothetical protein ACTODO_01682 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798795|gb|EDN81215.1| hypothetical protein ACTODO_01682 [Actinomyces odontolyticus ATCC
           17982]
          Length = 303

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 50/297 (16%), Positives = 93/297 (31%), Gaps = 40/297 (13%)

Query: 65  RKKPTTLKWLISEYRKSAHWGSL-AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
           R  P T+   + +      + SL A  +                      +T + +RS +
Sbjct: 18  RMSPHTVSAYLGDLHSLMEFLSLDADATPEQLR---------------EALTQRAVRSWL 62

Query: 124 ES---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                     S+  +   ++R    WA+R+  +  +P   +  P+       P  + D +
Sbjct: 63  ARTLADGGARSTIARHTAAIRNFTSWAMREGILVSDPAALLSSPRADQLLPSPLDESDAR 122

Query: 181 QF------KSFWSEGSQPRLA--FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-T 231
                   ++     SQ R     E     GLR S+ C   +  L  +  +++    G  
Sbjct: 123 VLLNTARDEAAAGGASQIRNWAILELTYACGLRVSEVCALDISSLNRDALTVRVVGKGNK 182

Query: 232 IITVELPDGFMKLLA----------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281
              V         L                    F+ +   +++           A +AG
Sbjct: 183 ERVVPYGPPAADALDHWLVRGRPQLAGERSGNALFLGDKGGRIDPRIVRSMVHKTAARAG 242

Query: 282 V-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
           V + + HG+R  +AT     GA    +    G  ++   + YT   D  RL     R
Sbjct: 243 VHDIAPHGLRHSTATHLLQGGADLRAVQEMLGHSSLSTTQRYTH-VDTARLSAIYQR 298


>gi|312142439|ref|YP_003993885.1| integrase family protein [Halanaerobium sp. 'sapolanicus']
 gi|311903090|gb|ADQ13531.1| integrase family protein [Halanaerobium sp. 'sapolanicus']
          Length = 380

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 57/340 (16%), Positives = 113/340 (33%), Gaps = 48/340 (14%)

Query: 30  GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAV 89
           G+R R+     +         +     ++           +++  +  + +      L+ 
Sbjct: 25  GKRNRISKTFNT--KREAKDWVAKKRQEKTMGIGTSLTKISVEKYLKRWLEDYALPKLSP 82

Query: 90  NSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESR--------KHTPSSAIQFLTSM 140
            +   +E      II   G    +++   HI+S    +        K    S    L   
Sbjct: 83  TTYAGYEMIVTKHIIPALGALKLKEVKPLHIQSYQNKKLKKGRLDGKEGGLSKKTVLQHH 142

Query: 141 RVL---FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE 197
           R+L   FK AV  + ++ NP  +V  P  +   IR  + E+++   +  +  S       
Sbjct: 143 RILNRAFKQAVLWQLISYNPVKAVPAPSPEKPEIRTLSIEEVEHLLNK-AGNSWLYYFIY 201

Query: 198 FLLYSGLRCSDSCRAGVQHLQNN-------IFSIKTQKTGTIITVELPDGFMKLLAMTPI 250
             + +G+R  +    G  H+  N          +KT+KTG +          +++++   
Sbjct: 202 VAVNTGMRRGELLGLGWNHIDFNGKTIQVTRTLVKTKKTGMVYKGPKNKSSRRVISIAED 261

Query: 251 G------------------------KETFFINNDKQKMNATQFSIWFKAKATKAGVN-KS 285
                                        F  +D  K+     +  FK  A + G+N  S
Sbjct: 262 DTKILKKLKIKQNENKLLFGPEYQNNNLVFCKSDGSKIYPNTTTNRFKLLAKRIGLNSVS 321

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
            H +R   AT+   AG     +    G  T+    +TY+ 
Sbjct: 322 LHDLRHTHATLMLQAGVHPKVVQERLGHSTITTTLDTYSH 361


>gi|261207287|ref|ZP_05921975.1| predicted protein [Enterococcus faecium TC 6]
 gi|289566174|ref|ZP_06446608.1| predicted protein [Enterococcus faecium D344SRF]
 gi|260078502|gb|EEW66205.1| predicted protein [Enterococcus faecium TC 6]
 gi|289162035|gb|EFD09901.1| predicted protein [Enterococcus faecium D344SRF]
          Length = 382

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 41/279 (14%), Positives = 98/279 (35%), Gaps = 41/279 (14%)

Query: 93  ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEY 152
            + E + + I+   G +   KIT    +     +        +F+ +   +  +A++  Y
Sbjct: 91  KTKEQFANHILPAFGAYKINKITIDIAQKFANEKVKKFVLYREFINNASRICDYAIKLGY 150

Query: 153 VAINPCLSVERPKRKTEGIR-----PWTKEDMQQFKSFWSEGSQPRLA--FEFLLYSGLR 205
           +  NP   +  PKRK           ++KE+++ F     +    R+   F  L ++G+R
Sbjct: 151 LQDNPLKKITVPKRKVSVHEEDTLNFFSKEELEIFLKSVEKKKDIRMYSFFRTLAFTGMR 210

Query: 206 CSDSCRAGVQHLQ----------------NNIFSIKTQKTG-TIITVELPDGFMKLLAMT 248
             +      + +                 N    ++  KT  +   + + D  M +L   
Sbjct: 211 VGELLALTWKDIDFNDNYIKINKTLARGKNRRLYVEQPKTKNSKRDIPVDDETMNILKKW 270

Query: 249 PIGKETFFINNDKQKMNATQF---------------SIWFKAKATKAGVNK-SAHGVRKF 292
            + +  + +      ++  Q                  W +    +  + + + HG+R  
Sbjct: 271 RLEQRKWLLTLGINTLSKNQLVFSNQKNEYLQLSKPRKWLEVIIKQNNLKRITIHGLRHT 330

Query: 293 SATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIR 330
            A++  +AGA   ++    G  ++    + Y    D+ +
Sbjct: 331 HASLLLEAGANIKDVQERLGHSSIQITMDLYIHITDKRK 369


>gi|20808517|ref|NP_623688.1| integrase [Thermoanaerobacter tengcongensis MB4]
 gi|34222921|sp|Q8R890|XERCL_THETN RecName: Full=Tyrosine recombinase xerC-like
 gi|20517139|gb|AAM25292.1| Integrase [Thermoanaerobacter tengcongensis MB4]
          Length = 391

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 43/310 (13%), Positives = 93/310 (30%), Gaps = 56/310 (18%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG-----DFDYRKITTKHIRSGVE 124
           TL  L+  +       S    + + +E ++   I+ S          + I  +   + + 
Sbjct: 65  TLGDLMHTWLFEVVRMSRKPATFVKYEGHYRNYIKNSELYGMKISIIKSIQIQRYYNKLY 124

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP------WTKED 178
            +  +  +       ++  F +AV + Y+A NPC   +     T   +       ++ E+
Sbjct: 125 QQGKSSKTIKALNNFLKTFFNYAVDEGYLAKNPCTGKKIVIPGTPEEKIETEIETFSDEE 184

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV--- 235
           +++ K     G + +  F     +GLR  +        +      ++ Q+    +T+   
Sbjct: 185 IKKIKEALK-GHRLKALFLLAFGTGLRQGELLGLKWTDIDFEKKELRVQRMIKQVTIIDE 243

Query: 236 ----------------------ELP----DGFMKLLAMT-------------PIGKETFF 256
                                  +P        +                   + K   F
Sbjct: 244 KGNRKYKTIEQIPKTKNSIRTVPIPSSLIPMLKEHRNRQREEKLKAGSVYLNDVEKGYVF 303

Query: 257 INNDKQKMNATQFSIWFKAKATKAGVNKS-AHGVRKFSATISADAGATAHELMATYGWKT 315
                  ++A+     +K    +AGV     H +R   AT   + G     +    G   
Sbjct: 304 TTELGNTIDASNLLKTYKKILNRAGVPYRKFHAIRHTYATKLFERGVPLKTVSELLGHSN 363

Query: 316 VD-QAETYTK 324
           +   A  YT 
Sbjct: 364 ISITANIYTH 373


>gi|312621730|ref|YP_004023343.1| integrase family protein [Caldicellulosiruptor kronotskyensis 2002]
 gi|312202197|gb|ADQ45524.1| integrase family protein [Caldicellulosiruptor kronotskyensis 2002]
          Length = 329

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 45/279 (16%), Positives = 88/279 (31%), Gaps = 25/279 (8%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           T +  +S + ++    ++  +++  ++      I+  G      +    I+    S    
Sbjct: 34  TFQEFVSYWFEAYAKIAVKQSTQKRYKELLKPAIQAIGSKPLSDVKPLDIQKIYISLTGK 93

Query: 130 PS--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            S  + ++    +  +FK AV  EY++ NP   V  P  + +    W  E  ++F     
Sbjct: 94  ISDCTILKLHRLLHEIFKHAVMWEYISNNPVKKVLPPSPEKKVFDVWDAETAKRFLEVI- 152

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSI-----------------KTQK 228
                       L++G+R  +        +  +  I S+                 KT K
Sbjct: 153 RNETIYYPVLIALHTGMRAGEIVSLKWCDVNFEARIISVVKSVRNNRGLKTSDVKTKTSK 212

Query: 229 TGTIITVELPDGFMKLLAMT-PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SA 286
               I   L      L  +T P   +          +     S  FK    +        
Sbjct: 213 RSVYINDVLYSELKNLYEITKPKPDDFVCPRLPTGNLTVEYLSKRFKKLVKRYNFPVIRF 272

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTK 324
           H +R   AT+    G     +    G   +   A+TY+ 
Sbjct: 273 HDLRHTFATLMLSLGVNTKIVAEILGHSDIKLTADTYSH 311


>gi|317055373|ref|YP_004103840.1| integrase family protein [Ruminococcus albus 7]
 gi|315447642|gb|ADU21206.1| integrase family protein [Ruminococcus albus 7]
          Length = 396

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 56/323 (17%), Positives = 107/323 (33%), Gaps = 53/323 (16%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYF---DQIIRKSGDFDYRKITTKHIRSGVESRKH---- 128
            ++ +     +L   +   +E       ++    G     KIT + I++ V S       
Sbjct: 74  EQWFEEYAKPNLRNTT---YERMLQLRKRVYAAIGHLRMDKITPRQIQAFVNSLSKEGAN 130

Query: 129 -------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
                   P +    L+ +  +F + V+   ++ NPC  V  PK +    + +T E +Q+
Sbjct: 131 ERTGKPLAPKTIRHNLSFVSDVFAYGVKMGVISDNPCAKVTLPKNEQTEKKIYTPEQVQR 190

Query: 182 FKSFW-SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK-----TQKTG--- 230
           F S    E  + R  F  ++YSG R  +      + +   NNI S++     T K G   
Sbjct: 191 FLSLLNDEPLKYRTFFNLMIYSGFRRGEMLGLEWKDVDFENNIISVRRTSNYTAKKGVYT 250

Query: 231 -------TIITVELPDGFMKLLAMTP--------------IGKETFFINNDKQKMNATQF 269
                  +  T++ P   M +L                  +  +  ++  + + M     
Sbjct: 251 DTTKTRKSQRTLKFPQAIMDMLREYKAEQDEQALKCGDKWVETDRLYVKWNGEPMQNGTP 310

Query: 270 SIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTK--G 325
             W      K  +     H  R   A++  + G     +    G  TV      Y     
Sbjct: 311 YFWLGEFCEKHDLPFYGLHSFRHLFASLLVNQGVDIVTVSGALGHSTVSTTSNIYCHMLE 370

Query: 326 ADRIRLGIKNSRRISSVVDSDDP 348
             R ++    S  +       +P
Sbjct: 371 ESRAKVSDAVSSALDFSGKKKEP 393


>gi|222530499|ref|YP_002574381.1| integrase family protein [Caldicellulosiruptor bescii DSM 6725]
 gi|222457346|gb|ACM61608.1| integrase family protein [Caldicellulosiruptor bescii DSM 6725]
          Length = 373

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 41/299 (13%), Positives = 97/299 (32%), Gaps = 39/299 (13%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE---- 124
           T   L+  +  +     +++++  S+ S     I    GD +  K+T   ++   +    
Sbjct: 62  TFGELLDLWLNTVAKNRVSLSTFQSYSSSIALHIKPFLGDVELNKLTAMDLQKYYQHITG 121

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
            +  + + A+     +     +AVR   +  NP   V+ P++++     W ++ +++   
Sbjct: 122 EKGLSSTLALYHHRIIHQALDYAVRMNMIEKNPADYVDPPRKRSYQPSIWDEDTIKRALD 181

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT--------------- 229
            +   +   +     +Y+G+R  +        +      I   KT               
Sbjct: 182 IF-RNTNIWVPVLLAIYTGMRIGEITALKWDDINLEQGYIVVSKTLMKINRQLYIKEKGE 240

Query: 230 --GTIITVELPDGFMKLLAMTPIGKETF--------------FINNDKQKMNATQFSIWF 273
              +   V +    ++ L      +E +                  D +  +    +  F
Sbjct: 241 NKSSYRIVAISSNVIEELKQWRRKQEQYKEKLKELYHNEGFVCTFEDGRVQDPKYITKVF 300

Query: 274 KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIR 330
           +    K G+ K   H +R   A++    G     +    G  T+      Y+   D  R
Sbjct: 301 QKTIEKHGLPKIRFHDLRHTHASLLLKHGVDPKHISDRLGHSTITTTLNIYSHVFDEKR 359


>gi|145300732|ref|YP_001143573.1| phage integrase [Aeromonas salmonicida subsp. salmonicida A449]
 gi|142853504|gb|ABO91825.1| phage integrase [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 353

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 55/333 (16%), Positives = 100/333 (30%), Gaps = 29/333 (8%)

Query: 11  VTKERTRHGKIIYYFRKG---HGRRIRLPY-PHESTFIPAYMSALTGSTPKREYINSPRK 66
           V K+     K      +     GRRIR  +                    K     S + 
Sbjct: 2   VVKKVDGKTKPWLADLRPDGDGGRRIRKSFMTKGEALAWERHQLTNKPWLKEPEPESEKH 61

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
           +   L  L+  +    H  +LA   R         +     +    + T++H  +  E R
Sbjct: 62  EQRRLLDLVHIWFG-RHGQTLADGDRR--RDKLVWLCEALDNPIATEFTSEHFSAYRERR 118

Query: 127 ------------KHTPSSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRP 173
                       K TP++  +    ++ +F    R   +   NP   + + K +   +  
Sbjct: 119 LAGELYVPGQCKKVTPTTINREQLYLQAVFNELARLGVWNGGNPLSDLRQYKVQESELAY 178

Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233
            ++++++Q      E     L     L +G R S+  +     +     +    K     
Sbjct: 179 LSQDEIEQLLDAGKEQRDLWLVVMLCLSTGARWSEIEKVSRSQVGMGRITFTKTKGKRNR 238

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFS 293
           TV +       LAM P      F +         +F    +    K  V +S H +R   
Sbjct: 239 TVPVAPWL---LAMLPKRTGRLFDD------CYAEFEKAIRRANIKLPVGQSTHVLRHTF 289

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           A+     G     L    G   +     Y+  A
Sbjct: 290 ASHFMMNGGNILVLQRILGHTDIKMTMRYSHFA 322


>gi|51473985|ref|YP_067742.1| site-specific tyrosine recombinase XerC [Rickettsia typhi str.
           Wilmington]
 gi|81389926|sp|Q68VT2|XERC_RICTY RecName: Full=Tyrosine recombinase xerC
 gi|51460297|gb|AAU04260.1| DNA integrase/recombinase XerC [Rickettsia typhi str. Wilmington]
          Length = 305

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 47/283 (16%), Positives = 108/283 (38%), Gaps = 28/283 (9%)

Query: 70  TLKWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFD--------YRKITTKHIR 120
           +++ LI +++K      + + N+ I++ +     +     ++         + +  + IR
Sbjct: 5   SIQELIKQWQKYLILQRNYSNNTVIAYNNDLKHFLEFMNYYNSELVTINHIKTVDIRLIR 64

Query: 121 SGVESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
           S +  RK+   T SS  + L++++  +K+  +   +  +   S++ PK+     +  + +
Sbjct: 65  SWLAKRKYENFTASSIARGLSTVKNFYKFLEKTILLNSHIIFSIKSPKKAKLLPKALSVD 124

Query: 178 D-------MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
           D       ++ + +      + +     +  +GLR S++      HLQN  F     K  
Sbjct: 125 DVLISLEHIEGYGNVKWVELRNKALLVLIYAAGLRISEALSITKLHLQNLEFIKIIGKGS 184

Query: 231 TIITVELPDGFM----KLLAMTP---IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
               +           K L + P      E  F     +K+  + F+          G+ 
Sbjct: 185 KERIIPWLPFARNLITKYLGILPYKLDENEPIFRGKHGKKLQPSVFNRELIKLKRVYGLP 244

Query: 284 --KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              +AH  R   A+   + GA    +    G K++   + YT+
Sbjct: 245 EYLTAHSFRHSFASHLLEYGADLRSIQELLGHKSLSTTQKYTQ 287


>gi|257870365|ref|ZP_05650018.1| integrase/recombinase [Enterococcus gallinarum EG2]
 gi|257804529|gb|EEV33351.1| integrase/recombinase [Enterococcus gallinarum EG2]
          Length = 320

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 53/263 (20%), Positives = 101/263 (38%), Gaps = 16/263 (6%)

Query: 75  ISEYRK---SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----K 127
           I+ Y++   S     L+  +   +    +  +R      +  +TT  IR  + +R    +
Sbjct: 44  IAAYKQFFVSKKIQGLSSGTLNLYMQTINLFMRSV-RKSFSDVTTNDIRLFIANREMIDR 102

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            +  +  +    +   FKW   +EY+A +P   VE  K      + +++ ++++ +S  +
Sbjct: 103 VSKGTLARERGCIVRFFKWLCNEEYIAKDPGARVENIKVPKRRKQEFSELEVEKLRS-AT 161

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELP----DGFM 242
             S+  L  E LL +G R S+      +       SI    K     T+ L         
Sbjct: 162 ANSKEALIIELLLSTGCRVSELVSLNFRDYDQENDSITVIGKGNKQRTLYLNAKAKMALN 221

Query: 243 KLLAMTP-IGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADA 300
             L   P I    FF     ++M +       K    +A V N   H  R+ +AT++   
Sbjct: 222 HYLKDVPHITGPLFFGQTVGKEMTSAGVQKLVKRLGNRAEVANVHPHRFRRTAATLARRH 281

Query: 301 GATAHELMATYGWKTVDQAETYT 323
           G     +M   G +++D    Y+
Sbjct: 282 GMPIELVMNFLGHESIDTTLKYS 304


>gi|206976115|ref|ZP_03237024.1| prophage lambdaba03, site-specific recombinase, phage integrase
           family [Bacillus cereus H3081.97]
 gi|206745569|gb|EDZ56967.1| prophage lambdaba03, site-specific recombinase, phage integrase
           family [Bacillus cereus H3081.97]
          Length = 303

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 44/291 (15%), Positives = 94/291 (32%), Gaps = 26/291 (8%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVESR 126
           L+ +I EY            +  +      Q+ R   +     +   I T H++  V ++
Sbjct: 3   LEDVIEEYLYHCMAKGFTQKTMKNKRQEMKQLKRFLMNEKRISELEAINTLHLKQYVRTK 62

Query: 127 ---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----M 179
                 P S +     +R  F W  ++EY+  N    VE PK   + ++ +T ++    +
Sbjct: 63  HEEGLQPQSIVAMSKIVRAFFSWCQKEEYLKENIAKKVELPKVPKKLLKGFTVQEVSAMI 122

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239
           + F       ++ +     L   GLR  +      Q+++     +  +     I + +  
Sbjct: 123 EAFSYKNYIEARNKAIVAMLSDCGLRAMEIRGLLTQNVKETKILVNGKGNKERI-MFISP 181

Query: 240 GFMKLLAM-----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KS 285
              K+L               +  + +F++     ++        K    +  +     S
Sbjct: 182 PLKKILIRYERLKKDYLKDRIVKTDHYFLSYTADPLSHMGIYNVIKEAGERVKIEEARCS 241

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
            H  R F A      G     L    G   +   + Y +  +   L  +  
Sbjct: 242 PHTFRHFFAVQCILNGVDILTLSKLLGHGDLSTTQRYLQSLEDFELIKRAM 292


>gi|120436726|ref|YP_862412.1| tyrosine recombinase XerC [Gramella forsetii KT0803]
 gi|117578876|emb|CAL67345.1| tyrosine recombinase XerC [Gramella forsetii KT0803]
          Length = 296

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 40/278 (14%), Positives = 96/278 (34%), Gaps = 26/278 (9%)

Query: 70  TLKWLIS--EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127
           +    +   +  K   + ++    +    ++ D I          +++   IRS +    
Sbjct: 2   SFSAFLDYLQLEKKYAFHTIT-AYKADLNAFQDFIQNTFEQDTILEVSYSQIRSWIVELS 60

Query: 128 HTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----Q 180
            +     +  + ++S++  +++ ++ + +  +P    +  K   +   P+++E++    +
Sbjct: 61  ESGISNRTINRKISSLKAYYRFLLKTKQIEFSPLAKHKALKTPKKIQIPFSEEEIVSVLE 120

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELP- 238
                  EG + RL  E    +G+R  +     +  L      +K   K      + L  
Sbjct: 121 NIDDSTYEGIRGRLIVELFYSTGIRRIELINIQLSDLDLERGVLKVLGKRSKERYIPLIS 180

Query: 239 ---DGFMKLLAMTP-----IGKETFFINNDKQK----MNATQFSIWFKAKATKAGVNKSA 286
              D  +K L            E  F+ +   K          + +F        + KS 
Sbjct: 181 SVIDTAVKYLERRREEGVNHDSEFLFLTSKGDKIYESFVYRVINNYFSE--VSGKLKKSP 238

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           H +R   AT   + GA  + +    G  ++   + YT 
Sbjct: 239 HILRHSFATHLLNQGANLNAVKELLGHSSLAATQVYTH 276


>gi|242371734|ref|ZP_04817308.1| bacteriophage integrase [Staphylococcus epidermidis M23864:W1]
 gi|242350520|gb|EES42121.1| bacteriophage integrase [Staphylococcus epidermidis M23864:W1]
          Length = 402

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 63/385 (16%), Positives = 133/385 (34%), Gaps = 62/385 (16%)

Query: 17  RHGKIIYYFRK---GHGRRIRLPYPHESTF----IPAYMSALTGSTPKREYINSPRKKPT 69
           + G   + +R       +  +  Y   S F       + + +     +     +P    +
Sbjct: 18  KRGNT-WRYRISLGKDAKTGKYKYISNSGFKRKSDAKHHAEMVERQLRTGDYIAP--STS 74

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE--SRK 127
           T K + +++ K      + V+S  + E      I +  +   + I     +  V   S +
Sbjct: 75  TFKQVANDWLKQYA-NEVKVSSVRAREKAIHHAIERFNNKPIQTINKHDYQRFVNDISAQ 133

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK--------TEGIRP-WTKED 178
           ++ +     + S  ++FK+A   + + I P   ++RPK+K        TE  +    K++
Sbjct: 134 YSKNYIDSIIASTNMIFKYAYDMKLIRIMPSEGIKRPKKKVSVEELEDTEIHKKFLEKDE 193

Query: 179 MQQFKSFWSEGSQPRLAFEF---LLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ------ 227
           + QF         P+ +FE    L Y+G+R  +        +   NN  +I         
Sbjct: 194 LFQFLEIAKNHHSPQNSFEVFCTLAYTGMRAGELLALKWSDIDFENNTINITKTYYNPNN 253

Query: 228 ----------KTGTII-TVELPDGFMKLLAMTPIG------------KETFFINNDKQKM 264
                     KT + I  + +    +KLL    +                 F + +   +
Sbjct: 254 NKKQYQILTPKTESSIGKIPVDPHVIKLLKNYKVDVQDTWKNELYVDNNFVFTDVNGYPL 313

Query: 265 NATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE- 320
              +  +W KA   K  +     S H  R     +  +AG    E+      K ++    
Sbjct: 314 VIKKLQLWIKAILKKTDITNKQISTHSFRHTHCALLIEAGVHIKEIQERLRHKDINTTMN 373

Query: 321 TYTKGADRIRLGIKNSRRISSVVDS 345
            Y K  +  +     S++ S ++++
Sbjct: 374 IYAKITNSYKK--DASQKFSKLMEN 396


>gi|154247950|ref|YP_001418908.1| integrase family protein [Xanthobacter autotrophicus Py2]
 gi|154162035|gb|ABS69251.1| integrase family protein [Xanthobacter autotrophicus Py2]
          Length = 467

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 61/347 (17%), Positives = 117/347 (33%), Gaps = 29/347 (8%)

Query: 7   LPPFVTK--ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIP-------AYMSALTGSTPK 57
           +P F+ K     R   +I Y      RR      +    +         +++ +      
Sbjct: 28  IPGFLVKITPTGRKTFMIAYVANNGQRRKPAIGRYGEITVEQARRIAQDWLAEVRRGADP 87

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITT 116
                + R+ P T+K L   +           ++  S   +    I+   G      +T 
Sbjct: 88  SAERTASRQAP-TVKELFDRFITDYSESRNKPSTVKSNRGFGKRHILPALGHMKVPDVTR 146

Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPW 174
             I + ++    +P +A + L+++R +F  A          NPC  + +   + +  R  
Sbjct: 147 SDIANLMKKMSKSPVNANRVLSAVRKMFNMAEVWGMRPDGTNPCRHIPKFPERGK-TRLI 205

Query: 175 TKEDMQQFKSFWSEGSQPRL-------AFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIK 225
           T  +M++   +        L       A         R S+            N      
Sbjct: 206 TDAEMRKLFEYLDRAEAEGLEHPFIILAIRLQFEFAARMSEIIELEWSWVDFDNRRVVWP 265

Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKETFFI----NNDKQKMNATQFSIWFKAKATKAG 281
             KTG +    +    ++L    P+ +++ F+     + K+ M+   +   +K    +AG
Sbjct: 266 DSKTGGMSK-PMNAEALRLFETAPLLEDSPFVCPSVFDPKKAMSPYTYYQGWKRILKRAG 324

Query: 282 VNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           +     HG+R  SAT  A++G      MA    KTV     Y    D
Sbjct: 325 LPHVGTHGIRHRSATDIANSGVPVKVGMALTAHKTVTMFMRYVHTED 371


>gi|319441371|ref|ZP_07990527.1| integrase/recombinase [Corynebacterium variabile DSM 44702]
          Length = 313

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 53/298 (17%), Positives = 101/298 (33%), Gaps = 43/298 (14%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE---SRKHTP 130
           I  Y +        + N+  ++ +         G       T  H R  ++         
Sbjct: 5   IDGYLEYLDLVKGRSANTVRAYGADLRAAFE--GVRTLDGFTLDHCRDVLDWAVENGDAK 62

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKSFW 186
           ++  +  +S+R    W V    + +NP   ++ PK      R   ++ +    +Q ++  
Sbjct: 63  ATLARIASSLRGFGSWLVHTGVLQVNPAAGLQTPKTSRTLPRVLREDQVGGVLEQARAHA 122

Query: 187 -------SEGSQPR-----LAFEFLLYSGLRCSDSCRAGVQHLQN----NIFSIKTQKTG 230
                    G  P+     +  E L  +G+R S+   A V+ L         S++    G
Sbjct: 123 HREPSEGDPGPTPKDIRDWVMLEVLYATGIRVSELAGADVEDLGGNGDPGSRSLRVVGKG 182

Query: 231 TIITV---------ELPDGFMKLLAMTPIGKET------FFINNDKQKMNATQFSIWFKA 275
               V          L +       M P    T       F+     +++  Q       
Sbjct: 183 DKTRVVPFGPTVEAALHEWLAVRAGMLPASGVTRAAQPALFLGARGGRIDVRQVRTVVHR 242

Query: 276 KATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRL 331
               AGV + + HG+R  +AT   D GA    +    G  +++  + YT  G +R+R+
Sbjct: 243 ATGGAGVPEIAPHGLRHSAATAVLDGGADLRVVQQLLGHTSMNTTQIYTHVGTERLRV 300


>gi|253563055|ref|ZP_04840512.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5]
 gi|251946831|gb|EES87113.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5]
          Length = 393

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 40/216 (18%), Positives = 79/216 (36%), Gaps = 14/216 (6%)

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE---RPKRKTEGIRPWTKEDMQQF 182
           +  + ++ + +          AV  E +  NP   ++   +PKR+       T ++++  
Sbjct: 170 KNISANTQVHYYKVFHHCLNSAVIDEIITSNPMDKIKNEEKPKRRRTERAFLTIDELKIL 229

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVEL 237
                  +  + AF F  + GLR SD       +L+          +  QKT  I+++ L
Sbjct: 230 SQTDFHNATLKKAFLFSCFCGLRHSDIVALTWGNLKKGKVGKMELHMTQQKTQEILSLPL 289

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI-WFKAKATKAGVNK--SAHGVRKFSA 294
                + L   P+  +        + + +   +       A KAG+ K  + H  R   A
Sbjct: 290 S---KEALKQLPVRGKVPDTEKVFKGLISLGRTNEILPKWAAKAGIQKHITFHSARHTHA 346

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
           T+    GA  + +    G   +   + Y K  D  +
Sbjct: 347 TMMITLGADLYTVSKLLGHTNIQTTQIYAKIVDESK 382


>gi|88602489|ref|YP_502667.1| phage integrase [Methanospirillum hungatei JF-1]
 gi|88187951|gb|ABD40948.1| phage integrase [Methanospirillum hungatei JF-1]
          Length = 301

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 41/259 (15%), Positives = 93/259 (35%), Gaps = 11/259 (4%)

Query: 79  RKSAHWGSLAVNSRISFES---YFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQ 135
           R+   +  L  + R        + + +  ++G        ++++      R++  ++  +
Sbjct: 17  RRFGQFIWLTRSFRGDLSKKWEHKELLRLETGVDVSASDISRYLEFLSLDRQYHATTYNR 76

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195
            L+S+   +++ + QE V  NP   ++RPK K + ++      + +      +  + RL 
Sbjct: 77  ILSSLSSFYRFLLMQEVVETNPVPRIDRPKVKEKELKYLKHSQVMRLLQSIPD-ERDRLM 135

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET- 254
              +  +G+R S+ C   V+ +  +   I+    G  + +   D          IG    
Sbjct: 136 IRIIYATGVRVSELCTMNVEDVDFDDQMIRVLGKGGKVRMVFVDEVTLNEIAGLIGNRLS 195

Query: 255 --FFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYG 312
              F       ++     + FK  A   G+  + H +R   A+           +    G
Sbjct: 196 GPLFPGQGGNHISVRTVQLIFKKYAPP-GI--TPHKIRHSYASELYRRSRNLRVVQENLG 252

Query: 313 WKTVDQAETYTK-GADRIR 330
             ++   E Y     D  R
Sbjct: 253 HASIKTTEVYLHTDVDERR 271


>gi|307297306|ref|ZP_07577112.1| integrase family protein [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306916566|gb|EFN46948.1| integrase family protein [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 299

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 41/292 (14%), Positives = 103/292 (35%), Gaps = 30/292 (10%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFES---YFDQIIRKSGDFDYRKITTKHIR------ 120
               +  ++++  +  +++ N+  ++ S   +F+  + + G  DY+ +  K I       
Sbjct: 3   FSEAVERFKENMEFVRNMSSNTVAAYLSDLHHFELFLNERG-IDYKSVKRKDIELFVKEY 61

Query: 121 --SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
                  ++ + ++  + L+++R  + +      V+  P   ++ PK +       T ++
Sbjct: 62  SQGKYSRKRPSATTVARNLSTIRSFYTFLYISGTVSKVPTELIKNPKTRRRIPDYITHDE 121

Query: 179 MQQFKSFWS---EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN---IFSIKTQKTGTI 232
           + +  S +     G + +     + + GLR S+ C+  +  L+        I + K    
Sbjct: 122 VMEILSSFRSTNLGKRNKAIVAIMYFCGLRVSEVCKLRLGDLRMGNSPAVRIMSGKGNRD 181

Query: 233 ITVELPD-------GFMKLLAMTPIGK--ETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
             V + D        ++++    P+ +  +  FI    + M           +       
Sbjct: 182 REVPMNDQVLSIVKEYLQIRREFPMSEYEDHVFIGTRGEPMARNVIPKVLNTQVKYVYPE 241

Query: 284 KS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           K    H  R   AT     GA+   +    G   +     Y    D+ +   
Sbjct: 242 KRVHPHLFRHSFATQLLQKGASIKIVQELLGHANLSTTSIYLHITDKEKRAA 293


>gi|210616044|ref|ZP_03290916.1| hypothetical protein CLONEX_03135 [Clostridium nexile DSM 1787]
 gi|210149952|gb|EEA80961.1| hypothetical protein CLONEX_03135 [Clostridium nexile DSM 1787]
          Length = 400

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 57/369 (15%), Positives = 115/369 (31%), Gaps = 68/369 (18%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEY 78
           G+ I  F    G+R  L     +        A+     + E+  +   +  TL      +
Sbjct: 20  GRYIARFTSKTGKRKTLYDFKLNELKRKLREAVY----EDEHGLNGNGESITLNAWYVTW 75

Query: 79  RKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAI 134
            +     ++ + +     SY++ ++    G    + I T H++  +     +     +  
Sbjct: 76  TELYKKKTVKMTTIYKNHSYYNSRVKNSIGKMYLQDIKTYHVQKFLNDLIDSGLAHGTVS 135

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
                +  +   AV  EY+  NPC+ VE PK   +  R  T+E+ ++F +F S       
Sbjct: 136 NIRFMLSDMLDKAVLSEYIRKNPCIGVEMPKEVKKERRVLTREEQEKFFTFASSYIHI-N 194

Query: 195 AFEFLLYSGLRCSDSCRAGVQH----------------------LQNNIFSIKTQKT-GT 231
             +F + +G R  +      +                       ++ + F   T KT  +
Sbjct: 195 VLKFAVTTGCRIGEVLGLKWEDCDFEKREIIINKTIHYSKASSPVEGSKFFYTTAKTISS 254

Query: 232 IITVELPDGFMKLLAMTPIGK------------------ETFFINNDKQKMNATQFSIWF 273
              + + D   ++L    + +                     F  +D   +     +   
Sbjct: 255 NRVIPMTDEVYEILQNQKMKQTEQKMWKRSIWKQHKEFQNLVFTCSDGSPVYYYNVNSAI 314

Query: 274 KAKATK--------AGVNK---------SAHGVRKFSATISADAGATAHELMATYGWKTV 316
           K    K        A   K         + H +R   AT   + G     +    G  T+
Sbjct: 315 KDYVEKINVIEIELAKEEKREPKIFELFTCHTLRHTYATRCYENGVDQQVVQKLLGHSTL 374

Query: 317 DQ-AETYTK 324
               + YT 
Sbjct: 375 AMTTDLYTH 383


>gi|270307506|ref|YP_003329564.1| site-specific recombinase, phage integrase family [Dehalococcoides
           sp. VS]
 gi|270153398|gb|ACZ61236.1| site-specific recombinase, phage integrase family [Dehalococcoides
           sp. VS]
          Length = 332

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 52/272 (19%), Positives = 98/272 (36%), Gaps = 32/272 (11%)

Query: 85  GSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFL---T 138
           G L+  +  ++     + I    ++G     +IT   +   ++  + T +SA   L    
Sbjct: 41  GQLSPATIHNYSYMVGKFIDFCSRNGVSTPPQITQLVVCLFIQELQMT-NSAQSVLDYFK 99

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRL 194
            +R    W    + ++I+P  ++  PK     I+P+ KE  Q      S  +    + + 
Sbjct: 100 QVRRFINWLRENDQISIDPLKNIRLPKVPRRIIQPFNKEQCQTLLDLVSLPTLEARRNKA 159

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLL 245
                + +G+RC +     ++ L     +IK    G    V          L +   + +
Sbjct: 160 ILMVFMDTGIRCQELADMKLEDLNFETETIKIFGKGAKERVVRISRRTQKALLEYQFERM 219

Query: 246 AMTPIGKETF-FINNDKQKMNA--------TQFSIWFKAKATKAGV---NKSAHGVRKFS 293
            + P  K  F +++  K + +                +    KAG+     S H  R   
Sbjct: 220 KLMPNDKCPFVWVSRLKNRYSRKQSHQLTNDGIRRMIENLGKKAGIQNLRCSPHTFRHTF 279

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKG 325
           AT+S   GA   EL +  G  T+     YT  
Sbjct: 280 ATMSLLNGAGEFELQSLLGHSTLTMTRRYTAS 311


>gi|16611927|gb|AAL27410.1|AF429957_1 XerC-like protein [uncultured bacterium]
          Length = 312

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 46/293 (15%), Positives = 105/293 (35%), Gaps = 27/293 (9%)

Query: 56  PKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT 115
           PK   ++ P      L  L+ +Y +       +  +    E+    ++ ++G  D  ++T
Sbjct: 2   PKPLKLSRPTPN---LDALLGQYLREREAHGKSPATVHWQETAARLLMEETGARDLAELT 58

Query: 116 TKHIRSGVESRKH----------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165
              +     +++           + S+  Q+  ++R   KW  ++ Y   +  L +   +
Sbjct: 59  PAILLDWFAAKRSQGGRGRRISVSISTLSQYERALRPFLKWLYQRGYTQTDLSLELPHYR 118

Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEF---LLYSGLRCSDSCRAGVQHLQNNIF 222
              + ++P+T ++++ F +  SE    R        LL +G+R  ++    +  +     
Sbjct: 119 PPKQVVQPFTPDELRAFFAAASEPPNARRKLALYRLLLDTGIRRGEAVSLQLDAIYWRER 178

Query: 223 SIKTQ-KTGTIITVELPDGFMKL-------LAMTPIGKETFFINNDKQKMNATQFSIWFK 274
           +++ + KTG  I          +             G+ T F++     + A + +    
Sbjct: 179 TMRVEGKTGGRIVYFSERSLRAINEYLNNERRPRRPGEATLFLDRHGDPLRAGEITQETI 238

Query: 275 AKATKAGVNKS---AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             A +AG+ +     H  R   A     AG     L    G   ++    Y  
Sbjct: 239 RIARRAGIMRDHVGPHTFRHTFAVEYLKAGGDLRSLQVLLGHSKLETTSIYLH 291


>gi|254303994|ref|ZP_04971352.1| bacteriophage integrase [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
 gi|148324186|gb|EDK89436.1| bacteriophage integrase [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
          Length = 370

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 44/294 (14%), Positives = 99/294 (33%), Gaps = 31/294 (10%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIR-KSGDFDYRKITTKHIRSGVESR- 126
           T   L  ++  +     ++ N+   +E+ +  ++      +    +IT   +++      
Sbjct: 71  TFGNLFKDWIFNFKKMDVSDNTFSVYETTYRLRLKDYNIANKRANQITLNDLQAYFNELQ 130

Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK-RKTEGIRPWTKEDMQQFKS 184
            K T     +    +    K+A+ Q  +  + C  +  PK +K E    ++K++ +    
Sbjct: 131 EKFTAGQIKRTYIHIHSCIKFAIFQGVMVRDYCGGIILPKEKKKEKYNVFSKQEQELILK 190

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ----------------- 227
             ++         F  Y+GLR  +        +++NI +I  Q                 
Sbjct: 191 TLNKKDVVDCLIYFTFYTGLRLGEVLALRWDDIKDNILTINRQYNKRVEVIDIGKNNLTY 250

Query: 228 -----KTG-TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281
                KT  +   + LP   + LL   P   +  F   + +  +  +      +      
Sbjct: 251 EFKDLKTKNSKREIPLPIKILDLLKDLPKQFDLIF-TINGKPFDRKRPQRRMISLCKTLK 309

Query: 282 VN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGI 333
           +  +S H +R   AT   +       + +  G   +    + YT      +L I
Sbjct: 310 IEYRSFHSIRHSYATRLFELDIPIKTVQSLMGHSDMSTTMDIYTHVMKDKKLEI 363


>gi|311693141|gb|ADP96014.1| site-specific tyrosine recombinase XerC [marine bacterium HP15]
          Length = 310

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 29/257 (11%), Positives = 80/257 (31%), Gaps = 20/257 (7%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRKHTPSSAIQFLTSMR 141
           +  +  S+     ++    G   +           +   + +     +  S  + L++ R
Sbjct: 23  SPRTCDSYHRDLLRLADWLGRSGFVAWQRVTNHDLRRYVATLSREGLSGRSIARHLSATR 82

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS---QPRLAFEF 198
             +++ +R++  + NP L +  PK      R    + +        +     +    FE 
Sbjct: 83  RFYQFLLREKLASDNPALDIRAPKSGRRLPRVADVDQLNHLLDGQPDDPLEVRDLCMFEL 142

Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPI------- 250
           +  SGLR ++     +  +      ++   K G    + +    +  +            
Sbjct: 143 MYSSGLRLAELASLDLDTVDVRSGEVRVMGKGGKERLLPVGRKAIAAIQAWVPYRAALAN 202

Query: 251 -GKETFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSAHGVRKFSATISADAGATAHEL 307
            G+   F++   ++++             +  A      H +R   A+   ++      +
Sbjct: 203 DGEAALFVSQRGERLSHRSIQARLSRWGISRGADQKLHPHLLRHSFASHMLESSGDLRAV 262

Query: 308 MATYGWKTVDQAETYTK 324
               G   +   + YT 
Sbjct: 263 QELLGHADIATTQVYTH 279


>gi|253580998|ref|ZP_04858259.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251847661|gb|EES75630.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 312

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 42/280 (15%), Positives = 93/280 (33%), Gaps = 27/280 (9%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRSGVESRKH 128
           L   ISEY K+      L   +  ++     Q         D+ + +T +    +  +K+
Sbjct: 7   LSNFISEYLKTCETIKKLDSKTIKAYRIDLSQFHTFMLPQEDFTEKSTLNSFLSLLHKKY 66

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQQFKS--- 184
            P +A + + +++  F + V +E ++ NP   +  + +      R      ++ F     
Sbjct: 67  KPKTAKRKIATLKAFFHYLVYEESLSQNPFEKLNVKFREPQVLPRIVPNTIIEIFLRTMY 126

Query: 185 ----------FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234
                      ++   +     E L  +G+R S+ C   +  +    + I     G+   
Sbjct: 127 KQKKLAPTTYKYNSILRDIAVIELLFATGVRVSELCSLTLSQIDFTTYKIIINGKGSKER 186

Query: 235 V---------ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284
           +         E+   +             FFIN   ++ +              A ++  
Sbjct: 187 ILQIGNEDVKEILSEYYAAFKTDISKTGWFFINRLHKRYSEESVRSMIVKYLKLAAIDMH 246

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
            + H  R   AT+  ++      +    G  ++   E YT
Sbjct: 247 ITPHMFRHSFATLLLESDVDIRYIQRMLGHSSIKTTEIYT 286


>gi|189460471|ref|ZP_03009256.1| hypothetical protein BACCOP_01112 [Bacteroides coprocola DSM 17136]
 gi|189432715|gb|EDV01700.1| hypothetical protein BACCOP_01112 [Bacteroides coprocola DSM 17136]
          Length = 379

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 46/238 (19%), Positives = 85/238 (35%), Gaps = 16/238 (6%)

Query: 110 DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
            +R       +   +S+K   +SA  + ++ R + K A ++  +  N    ++R   +  
Sbjct: 135 RFRSYLLNTAKLRDDSKKLKQNSAAGYFSTFRGMLKEAYKKRMLKENINDFLDRIPEEET 194

Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIK 225
            I   T+ ++    +        R A  F   +G R SD      + +    +      K
Sbjct: 195 EINYLTEHELGLIINNECPIPVLRKAIIFACITGFRRSDILALKWEDIKELPKGGWCVFK 254

Query: 226 T-QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284
             QKT  +  V + D  M+++   P G+   F       +     +   K      G+ K
Sbjct: 255 RMQKTKNMANVPIGDDLMEVI--GPRGEGLVF-----NGLTTYMLTYPMKRWFKSIGIKK 307

Query: 285 S--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
               H  R   AT+S   G     +    G K       YTK  +   L  + ++R+S
Sbjct: 308 DLHFHCTRHTYATLSLALGTDIITIKNVLGHKQESTTMRYTKVVN--PLKEQAAKRLS 363


>gi|29840494|ref|NP_829600.1| site-specific tyrosine recombinase XerD [Chlamydophila caviae GPIC]
 gi|29834843|gb|AAP05478.1| integrase/recombinase XerD [Chlamydophila caviae GPIC]
          Length = 298

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 39/227 (17%), Positives = 73/227 (32%), Gaps = 22/227 (9%)

Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
               +  RK   S+  + L +++V F++    + +   P   +E PK         T ++
Sbjct: 59  FVQQLHKRKEAESTLARRLIALKVFFRFLKEAKLLDHPP--LIEHPKIWKRLPSVLTPKE 116

Query: 179 MQQFKSFW------SEGSQPRLAFEFLLY-SGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
           +    S           S    A    LY +G+R S+ C   +  + ++   + T K   
Sbjct: 117 VDALLSAAQQSKTSPIISARDTAILLTLYSTGIRVSELCDLCISDVSDDFLRV-TGKGSK 175

Query: 232 IITVELPDGFMKLLAM-----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280
              V L     K +                 +   F++    ++  +         A + 
Sbjct: 176 TRLVPLGKVACKAIDAYLCPFRETFQKLHPEEHHLFLSVRGHRLERSCVWRRIHYYAKQV 235

Query: 281 GVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
              + S H +R   AT   D  A    +    G   +   E YT  A
Sbjct: 236 THKRVSPHSLRHAFATHLLDNKADLRIIQEMLGHARIASTEIYTHVA 282


>gi|125973642|ref|YP_001037552.1| phage integrase [Clostridium thermocellum ATCC 27405]
 gi|125713867|gb|ABN52359.1| phage integrase [Clostridium thermocellum ATCC 27405]
          Length = 301

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 41/272 (15%), Positives = 91/272 (33%), Gaps = 27/272 (9%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSG-----DFDYRKITTKHIRSGVESRKHTP 130
           S Y  S      + ++  ++  +     +        DFD   IT   IR      + T 
Sbjct: 18  SAYLMS---IDKSDSTIKTYIEHIQAFAKWFEETNCIDFDPAVITEIDIRDMRSYLQGTR 74

Query: 131 ----SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI-RPWTKEDMQQFKSF 185
               ++    L S++  F +   ++Y+  NP  ++ + K ++  I +   ++  +  +  
Sbjct: 75  HLKETTINLRLASLKCYFSFLESEKYIKHNPARNIRKIKLQSPNIAKSLDEQTYRALRRH 134

Query: 186 -WSEGSQPRLA-FEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK-TQKTGTIITVELPDG 240
            +  G++  +A FE     G+R  +     +      +   ++K   K   +  + L   
Sbjct: 135 VYRGGNKAHIAMFEIFTRCGVRNFELINIRLTDFDISDRKGTLKIVGKLNKVRYIPLHKD 194

Query: 241 FMKLL-------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKF 292
               +              +  FI+  K     +     FK    + G+ + + H  R +
Sbjct: 195 VRDAINNWMEIRKNIKTEYDNLFISERKTPYTRSGIWKIFKKYCEQIGITDVTIHSFRHY 254

Query: 293 SATISADAGATAHELMATYGWKTV-DQAETYT 323
                   G     +    G  +    A+ YT
Sbjct: 255 FCRTLLKNGVDISVVAKLAGHSSGFVTAQVYT 286


>gi|282852712|ref|ZP_06262054.1| toxin-antitoxin system, toxin component, PIN family [Lactobacillus
           gasseri 224-1]
 gi|282556454|gb|EFB62074.1| toxin-antitoxin system, toxin component, PIN family [Lactobacillus
           gasseri 224-1]
          Length = 386

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 65/365 (17%), Positives = 131/365 (35%), Gaps = 55/365 (15%)

Query: 11  VTKERTRHGKIIYYFRKGHGRRIRLPYPHE--STFIPAYMSALTGSTPKREYINSPR--- 65
           +T+ +T++GK  Y F+   G+        +       +Y  AL      ++ +       
Sbjct: 7   ITRYKTQNGKKRYRFKVYVGKDEETGNSIQARKQGFKSYDDALKSYFEIKDKVAKGTYTG 66

Query: 66  --KKPTTLKWL----ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119
              K      L    +  Y+ +    +L+ N+++ F  +   I+ + G+    KITT   
Sbjct: 67  NENKKHKFSELYEMWLENYKNTVKVSTLS-NTKLFFRLH---ILPELGNLYIEKITTFKC 122

Query: 120 RSGVESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP---WT 175
           +  V    K  P +   +      +FK+AV  + +A NP  SV +PK + E       ++
Sbjct: 123 QKIVNKWFKELPKTYKVYTNLASNIFKFAVNNDLIAKNPMKSVIKPKLQVEKKPFTNFYS 182

Query: 176 KEDMQQFKSFWSE--GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-- 231
           K ++  F     E  G +  + F  L Y+G+R  ++       +  +  +IK  KT T  
Sbjct: 183 KNELNIFLKEAKECKGLKVYMLFRLLAYTGMRRGEALALKWSDIDFSNQTIKINKTVTTA 242

Query: 232 --IITVELPDGFMKLLAMTPIGKETF-FINNDKQKMNATQFS------------------ 270
                +              I ++T  +++  +++     F                   
Sbjct: 243 EHAALIIGTPKTKASYRTIAIDRQTIKYLSGWRKEQRKQLFQLGFNALSDDQLIFSNGDN 302

Query: 271 IWFKAKATK---------AGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
              +    +         AG+   + HG R   A++  +AG    ++    G  ++    
Sbjct: 303 TLIRQATVRKWDQSISKHAGLKYITVHGFRHTHASLLFEAGTPMQDVKERLGHSSITTTM 362

Query: 321 -TYTK 324
             YT 
Sbjct: 363 NIYTH 367


>gi|82703905|ref|YP_413470.1| Phage integrase [Nitrosospira multiformis ATCC 25196]
 gi|82411970|gb|ABB76078.1| Phage integrase [Nitrosospira multiformis ATCC 25196]
          Length = 323

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 43/276 (15%), Positives = 92/276 (33%), Gaps = 31/276 (11%)

Query: 84  WGSLA-VNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGVE---SRKHTPSSAIQF 136
           + +L    +R ++ +     +     +   ++R +T  H+ +  +    R  + ++    
Sbjct: 37  FANLPNDATRRAYNNALKDFMGFTDITRPDEFRSVTRAHVIAWRDELVKRSLSGTTIRHR 96

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKT-EGIRPWTKED-----MQQFKSFWSEGS 190
           L ++  LF++   +  V  NP   V+RP  ++ EG  P   +      +    S   +G 
Sbjct: 97  LAALSSLFEYLCERNAVTHNPVKGVKRPPVESYEGKTPALGDHQARALLDAPHSLSLKGK 156

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQ---NNIFSIKT-QKTGTIITVELPDG------ 240
           + R     LLY  LR  + CR  V+  +     +  ++   K G    + L         
Sbjct: 157 RDRALLATLLYHALRRDELCRLTVKDFRHERRGVRHLRVLGKGGKTRYIPLHPAASTLIT 216

Query: 241 --FMKLLAMTPIGKETFFINND------KQKMNATQFSIWFKAKATKAGVNKSAHGVRKF 292
                           F   ++       + +         +  ++  G     H +R  
Sbjct: 217 EYLEAAGHGAEDSAPLFHPVSNNCAGVSSKALTPDGVYKLVREYSSNLGFEIGPHSLRAT 276

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           +AT + D  A   ++    G   +     Y     R
Sbjct: 277 AATNALDHQADISKVQEWLGHANISTTRIYDHRRSR 312


>gi|313204183|ref|YP_004042840.1| integrase family protein [Paludibacter propionicigenes WB4]
 gi|312443499|gb|ADQ79855.1| integrase family protein [Paludibacter propionicigenes WB4]
          Length = 293

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 38/275 (13%), Positives = 103/275 (37%), Gaps = 24/275 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVESR-- 126
           +++E+ +   +  + + ++ +S+ +   Q          +FD   + ++ I+  + S   
Sbjct: 1   MMNEFLQYLQYEKNYSSHTVLSYNTDLIQFCNFLNVTPDEFDPNSVNSQQIQQWILSLMS 60

Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
              +  +  + +++++  + + + +     NP L +  PK K      + + +M      
Sbjct: 61  VDLSARTLSRKISTLKSFWHFLLSRRLSKHNPTLKIILPKTKKPIPAFFKENEMTAALDN 120

Query: 186 WS-----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPD 239
                  E ++ RL  E    +G+R S+      + + ++  +I+   K      + +  
Sbjct: 121 SMKPDSFEYTRNRLILETFYLTGIRLSELLNIQDKDIDHSAGTIRVIGKRNKERIIPIDK 180

Query: 240 GFMKLLAMTPIGK--------ETFFINNDKQKMNATQFSIWFKA-KATKAGVNK-SAHGV 289
             +  +      +           F+ N+ +KM             +  + ++K S H +
Sbjct: 181 SLINDIERYITLRNESIDIFEPNLFVRNNGKKMYPKMLYNIVHENMSEVSSLHKRSPHVL 240

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           R   AT   + GA  + +    G  ++   + YT 
Sbjct: 241 RHTFATSLLNGGADINAVKELLGHSSLSATQVYTH 275


>gi|310779869|ref|YP_003968201.1| integrase family protein [Ilyobacter polytropus DSM 2926]
 gi|309749192|gb|ADO83853.1| integrase family protein [Ilyobacter polytropus DSM 2926]
          Length = 362

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 54/301 (17%), Positives = 94/301 (31%), Gaps = 35/301 (11%)

Query: 56  PKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKI 114
                +   +    T       Y        +A  +    E  F + I+    +    KI
Sbjct: 40  ESEHKLKGSKSVNMTFTSFYDLYMGDIK-PRVAETTYHLKELIFKNSILPYFQNMKMSKI 98

Query: 115 TTKHIRSGVES-------RKHTPSSAIQFLTS---MRVLFKWAVRQEYVAINPCLSVERP 164
           T   IR            +   P  A         +  L   AV    +  NPC      
Sbjct: 99  TPIIIRDFQNKLITGTNPKTGNPYKAHYIQKINAQLSALMNHAVNFYELKENPCKKAGPL 158

Query: 165 KRK-TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223
           K +  + I  WT E+ ++F            AF  L ++G+R  +     +  +      
Sbjct: 159 KLRYDKKINFWTLEEFEKFTEVIEHKPMSYTAFNILFWTGIRVGELLALTLSDVDLKKGI 218

Query: 224 IKTQKT----------------GTIITVELPDGFMKLLAMTPIGKETFFINNDKQ--KMN 265
           +K  K+                 +  T++LP   ++LL      K  + +  + +   M 
Sbjct: 219 MKIDKSYARLKGKNIIKSTKNESSERTIKLPQNLVELLK--KYVKMMYGLTQEDRLFPMT 276

Query: 266 ATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYT 323
              F         KAGV K + H +R   A++  ++G     +    G   VD    TY+
Sbjct: 277 KEVFKNDLVRYCDKAGVKKITPHDLRHSHASLLINSGINPLAISKRLGHAKVDMTLNTYS 336

Query: 324 K 324
            
Sbjct: 337 H 337


>gi|311739716|ref|ZP_07713551.1| tyrosine recombinase XerD [Corynebacterium pseudogenitalium ATCC
           33035]
 gi|311305532|gb|EFQ81600.1| tyrosine recombinase XerD [Corynebacterium pseudogenitalium ATCC
           33035]
          Length = 305

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 36/264 (13%), Positives = 82/264 (31%), Gaps = 21/264 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMR 141
              A  +   + +    + R      + +     +R  +        + S+  +   + +
Sbjct: 32  RGRAEATVRGYRADLRDLARSVPT--FAEFDLNSLRQWLAEAVTEGKSRSTLARRTAAAK 89

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM-----QQFKSFWSEGSQPRLAF 196
               WAVR+ ++  +    +  PK           E           +      +     
Sbjct: 90  GFSTWAVREGHLKRDVAARLVTPKVGRHLPTVLAPEQAGELMGNAVSADEVHFLRDSAIL 149

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-----ELPDGFMKLLA----- 246
           E L  SG+R ++  R  +  +     ++     G    V        D   + +      
Sbjct: 150 ELLYASGMRVAELVRLDLGDIDFQRGTLHVTGKGNKQRVVPFGHAAEDALKQWIDKGRGE 209

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAH 305
           +     E  F+ +   +++  Q     +  A   G    + HGVR  +AT   + GA   
Sbjct: 210 IASAETEAVFVGSRGGRIDQRQVRRIVEKAAKVTGAQGLTPHGVRHSAATHLLEGGADLR 269

Query: 306 ELMATYGWKTVDQAETYTKGADRI 329
            +    G  +++  + YT  + + 
Sbjct: 270 VVQELLGHSSLNTTQIYTHVSAQR 293


>gi|329947868|ref|ZP_08294800.1| phage integrase, SAM-like domain protein [Actinomyces sp. oral
           taxon 170 str. F0386]
 gi|328523492|gb|EGF50590.1| phage integrase, SAM-like domain protein [Actinomyces sp. oral
           taxon 170 str. F0386]
          Length = 306

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 44/295 (14%), Positives = 94/295 (31%), Gaps = 32/295 (10%)

Query: 68  PTTLKWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSG--------DFDYRKITTKH 118
           P T   L++ Y +       L+ ++  ++      ++   G              +    
Sbjct: 2   PRTRADLLAAYHRYLSLQRDLSQHTARAYLVDICDLLSFLGVGEGDAPIGAALATLDLAD 61

Query: 119 IRSGVESRK---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
           +R  + +     H+ ++  +   S+R    WA  +  +  +    +  P+         T
Sbjct: 62  LRDWLAALAASGHSRATLARRSASVRTFSAWAFEEGILTSDVAARLRAPRVDNRLPGVLT 121

Query: 176 KEDMQQFKSFWS--------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT- 226
            +   Q     +           +     E L  +G+R S+     V  L ++  +++  
Sbjct: 122 AQQAAQLLQTAADLAADGDILAVRDLAIAETLYATGVRVSELVGLDVTDLDHSQRTLRVL 181

Query: 227 QKTGTIITVELPDGFMKLLA---------MTPIGKETFFINNDKQKMNATQFSIWFKAKA 277
            K     TV       + L            P      F+    ++++            
Sbjct: 182 GKGRKERTVPYGLPAARALEGWLSRREEICAPDAGTALFLGARGRRIDPRAARDIVHRLC 241

Query: 278 TKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330
             AGV +   HG+R  +AT     GA    +    G  ++   + YT   A+R+R
Sbjct: 242 AAAGVPDLGPHGLRHSAATHVLSGGADLRSVQELLGHSSLATTQRYTHVSAERLR 296


>gi|237801966|ref|ZP_04590427.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. oryzae str. 1_6]
 gi|331024824|gb|EGI04880.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. oryzae str. 1_6]
          Length = 318

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 47/270 (17%), Positives = 93/270 (34%), Gaps = 30/270 (11%)

Query: 89  VNSRISFESYFDQIIR---KSGDFDYRKITTKHI---RSGVESRKHTPSSAIQFLTSMRV 142
             +R ++++           +G  ++R +   H+   R+ +E R  + ++  + L ++  
Sbjct: 38  PRTRRAYQADLRDFCSFVGLAGAEEFRAVNRSHVLAWRAQLERRALSGATIRRKLAALAS 97

Query: 143 LFKWAVRQE-YVAINPCLSVERPKRKT-EGIRPWTKED-----MQQFKSFWSEGSQPRLA 195
           LF + +        NP   V RPK +T EG  P   +D     +    +   +G + R  
Sbjct: 98  LFDYLLNNNALAGGNPVHGVARPKVETNEGKTPALGDDQAKRLLDAPDAESLQGVRDRAI 157

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ---KTGTIITVELPDGFMKLLAMTPIGK 252
              LLY GLR  +        LQ        +   K G I  + L     + + +  +  
Sbjct: 158 LAVLLYHGLRREELSLLQTGDLQERRGVKHLRIHGKGGKIRYLPLHPVAAERIYVYLVRD 217

Query: 253 E-------TFFINNDKQ----KMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISA 298
                     F +   +     +            A+ A +       HG+R  +AT + 
Sbjct: 218 GDRALTPGALFRSQRGKTSGTGITGKGVYGVVTKWASAAQIRVDGLGVHGLRATAATNAL 277

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADR 328
           +  A   ++    G   +     Y +   R
Sbjct: 278 EHDADIAKVQIWLGHANISTTRLYDRRGQR 307


>gi|288573040|ref|ZP_06391397.1| integrase family protein [Dethiosulfovibrio peptidovorans DSM
           11002]
 gi|288568781|gb|EFC90338.1| integrase family protein [Dethiosulfovibrio peptidovorans DSM
           11002]
          Length = 263

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 48/242 (19%), Positives = 87/242 (35%), Gaps = 13/242 (5%)

Query: 96  ESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFLTSMRVLFKWAVRQEY 152
            + F + +   G  D   I T  IR+ V S       P+S  + L++++ L K+   +  
Sbjct: 1   MAQFAEFLETQGVSDVSDIATGEIRAFVRSLSGYGFAPASVGRKLSAIKSLMKYLFEERV 60

Query: 153 VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLAFEFLLYSGLRCSD 208
           +  +P   V  P+R     R  + E + +          +G +     E L   GLR ++
Sbjct: 61  IEKDPSGRVRGPRRSDRLPRAMSVEQVSRMIDCAYDDDEQGLRNGALIELLYGCGLRVAE 120

Query: 209 SCRAGVQHLQNNIFSIKTQKTGT-IITVELPDGFMKLLAMTPI----GKETFFINNDKQK 263
                 + ++     +K    G+    V       + L         G E  F    +  
Sbjct: 121 VVSVRWEDVEIEERWLKVMGKGSKERAVPFGSMAQRALTGLRALSMPGDEYVFPGKKRGC 180

Query: 264 MNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           +          A A KAGVN  + H +R   AT   + GA+   +    G + +   + Y
Sbjct: 181 LTVRTVHRVVVAAAAKAGVNGVTPHSLRHSFATHLLEGGASLRVVQELLGHEHLTTTQRY 240

Query: 323 TK 324
            +
Sbjct: 241 LR 242


>gi|168186645|ref|ZP_02621280.1| phage integrase [Clostridium botulinum C str. Eklund]
 gi|169295376|gb|EDS77509.1| phage integrase [Clostridium botulinum C str. Eklund]
          Length = 393

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 52/368 (14%), Positives = 121/368 (32%), Gaps = 53/368 (14%)

Query: 16  TRHGKIIYYFR--KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
            R     YYF   K  G+  ++     +T   A  S            +  +    ++  
Sbjct: 7   KRGSSWYYYFNVCKEEGKYKKVCRKGGATKKEAETSLRKALNEYESTGSIKKDTNISVSD 66

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132
            +  + +     +L   +   ++   +  II + G++  + ++   ++  + S+K    +
Sbjct: 67  YLKYWLEENVKTNLKYRTYTCYKRVIENHIIPQFGNYKLKNLSALELQEFLNSKKKNGYT 126

Query: 133 AI---QFLTSMRVLFKWAVR-QEYVAINPCLSVERPKRKT----EGIRPWTKEDMQQFKS 184
                 F   +    K AV    ++  NP L V  PK  T    E I   T +++ Q   
Sbjct: 127 KNTLGNFYGVLSGSLKMAVHPYGFIKENPMLYVSMPKFNTKQSDEKISVLTIDEVNQILD 186

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK---------------- 228
            +  GS   +  +   ++GLR S+ C     ++     ++  +K                
Sbjct: 187 RFPFGSSFYINVQIAFHTGLRASEVCSLTWDNIAFENKTLTVEKNLLKQGHEWCFDTPKT 246

Query: 229 TGTIITVELPDGFMKLL-------------------------AMTPIGKETFFINNDKQK 263
             +  T+ + D  + +L                                +      + + 
Sbjct: 247 KSSNRTIRIGDTLINILKKHNLWQKENQLRYGKYYAKNTYDFHGKTYTTDLISTKENGEL 306

Query: 264 MNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETY 322
           +++       +      G+  + H +R   AT+  + GA   ++    G   +    +TY
Sbjct: 307 VSSDSLKYLSRVVNYDLGIKFNFHALRHTHATMLLEGGANIKDIQKRLGHSKLATTMDTY 366

Query: 323 TKGADRIR 330
           +   ++I+
Sbjct: 367 SHVTEKIQ 374


>gi|224827079|ref|ZP_03700176.1| integrase family protein [Lutiella nitroferrum 2002]
 gi|224600745|gb|EEG06931.1| integrase family protein [Lutiella nitroferrum 2002]
          Length = 330

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 47/309 (15%), Positives = 93/309 (30%), Gaps = 23/309 (7%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87
             G+R R  +P +S  + A+ + +     +       R+   TL  LI  + +       
Sbjct: 19  RGGKRFRKTFPLKSEAL-AWEAWVKSQVAQSPEWEPERRDLRTLAELIELWYQH---HGC 74

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLT---SMRVLF 144
            + S          +    G+    + + +        R  +  +A         +R +F
Sbjct: 75  NLRSAADTLRRLLAMAEAMGNPVADRFSAEDFAKYRAQRLESGVTANNMNREHAYLRSVF 134

Query: 145 KWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS--EGSQPRLAFEFLLY 201
               R   +   NP   V + K   + +   T + +Q   +           L  +  L 
Sbjct: 135 NELKRLGLWKKENPLAMVRQFKIPEKELSWLTVDQIQTLLAELENCRNKDALLVAKICLS 194

Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK 261
           +G R  ++       L+N        K+G   TV + +G    L    +G          
Sbjct: 195 TGARWGEAEGLRKSQLRNQSLQFTGTKSGKNRTVPVAEGLYDELKAKDVGSTDRLF---- 250

Query: 262 QKMNATQFSIWFKAKATKAGV----NKSAHGVRKFSATISADAGATAHELMATYGWKTVD 317
                      F+    + G+     +  H +R   A+     G     L    G +++ 
Sbjct: 251 -----QYCWGAFRDAVERCGLVLPDGQMTHVLRHTFASHFVMNGGNILVLQKILGHQSLT 305

Query: 318 QAETYTKGA 326
               Y   A
Sbjct: 306 MTIRYAHLA 314


>gi|254515505|ref|ZP_05127565.1| tyrosine recombinase XerC [gamma proteobacterium NOR5-3]
 gi|219675227|gb|EED31593.1| tyrosine recombinase XerC [gamma proteobacterium NOR5-3]
          Length = 311

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 38/269 (14%), Positives = 95/269 (35%), Gaps = 23/269 (8%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGVESRKHT---P 130
           EY +S     L+ ++  ++    D      ++        +   H+R  +     T   P
Sbjct: 20  EYLRSVR--RLSSHTVTAYRRDLDSFEDFCQQHSVTGCSDVQESHVRQWLAQGHRTGLAP 77

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---S 187
           +S  + L+++R  F+W         NP L+V+ P+++ +       + +  +        
Sbjct: 78  NSLQRRLSALRAYFQWESSDTGQRRNPALAVQAPRKRRKLPGTLEADQVGVYLRADDNDP 137

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII-TVELPDGFMKLLA 246
              +     E L  SGLR ++     +  +  +   I     G+   TV +    ++ + 
Sbjct: 138 LQLRDLAMAELLYSSGLRLAELRAVNIHDIDRSQSLISVTGKGSKTRTVPVGRIAIEAID 197

Query: 247 M---------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSAT 295
                     +   ++  F++   ++++        +  A + G+ +    H +R   A+
Sbjct: 198 AYLPHRPTPTSAADEQALFVSGRGRRISERSIQARIQLLAQRNGLGRDVHPHMLRHSFAS 257

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTK 324
              ++      +    G   +   + YT 
Sbjct: 258 HLLESSGDLRAVQELLGHSDISTTQIYTH 286


>gi|326333662|ref|ZP_08199899.1| putative tyrosine recombinase XerC [Nocardioidaceae bacterium
           Broad-1]
 gi|325948568|gb|EGD40671.1| putative tyrosine recombinase XerC [Nocardioidaceae bacterium
           Broad-1]
          Length = 320

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 41/311 (13%), Positives = 99/311 (31%), Gaps = 29/311 (9%)

Query: 52  TGSTPKREYINSPRKKPTTLKWLISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDF- 109
                + E  ++  +       L+ +Y +  +    L+ ++  ++      ++  +G   
Sbjct: 3   ADQEAEAEGGSADAELSEAYAALLGDYERHLSAERGLSDHTVRAYLGDVRSLLDHAGRMG 62

Query: 110 --DYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP 164
             D   I  + +RS +  +    H+ ++  +  T+ RV   W VR     ++   ++  P
Sbjct: 63  RTDPEGIDLRTLRSWLAKQQTTGHSRTTLARRATAARVFCGWLVRTGRAQVDAGAALGSP 122

Query: 165 KRKTEGIRPWTKEDMQQF--------KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216
           K           ++++          +   + G +     E L  +G R  +     +  
Sbjct: 123 KAHRTLPPVLRPDEVESLIAAAIAAAEDGTAVGMRDIAVLEMLYATGSRVGELVGLDLDD 182

Query: 217 LQNNIFSIKT-QKTGTIITVELPDGFMKLLAM----------TPIGKETFFINNDKQKMN 265
           +      ++   K      V       + L            T       F+     +++
Sbjct: 183 VDYERRVVRVLGKGRKERMVPFGGPAARALDRWIVRGRPQLVTESSGPALFLGARGGRLD 242

Query: 266 ATQFSIWFKAKATK--AGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
                     +        +   HG+R  +AT   + GA    +    G  ++   + YT
Sbjct: 243 QRAVRTLVHRRLADVPGAPDLGPHGLRHSTATHLLEGGADLRSVQELLGHASLATTQIYT 302

Query: 324 K-GADRIRLGI 333
              +DR+R   
Sbjct: 303 HVSSDRLRKAY 313


>gi|83954474|ref|ZP_00963185.1| tyrosine recombinase [Sulfitobacter sp. NAS-14.1]
 gi|83840758|gb|EAP79929.1| tyrosine recombinase [Sulfitobacter sp. NAS-14.1]
          Length = 315

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 51/276 (18%), Positives = 84/276 (30%), Gaps = 28/276 (10%)

Query: 85  GSLAVNSRISFESYFDQII--------RKSGDFDYRKITTKHIRSGVESRKHT---PSSA 133
              A N+  +++      +           G     KIT   +R+ +   +     P S 
Sbjct: 28  KGAAENTITAYQGDLVDFLAFMTLHKGDSQGLGALSKITISDMRAWMAQTRSGDVGPRSM 87

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS-------FW 186
            + L++++  ++W   +E       LS   PK   +  RP   +  Q             
Sbjct: 88  ARKLSAVKAFYRWLAEREGFEPTAVLSTRSPKFPKKLPRPLAIDAAQAMIDSVEMQSRHA 147

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM---- 242
              ++       L   GLR S++                  K G    V +         
Sbjct: 148 WVAARDVAVLTLLWGCGLRISEALGLKGADAPLPEVLRIIGKGGKERVVPVLPAARDAVE 207

Query: 243 KLLAMTPIGKE---TFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATIS 297
             L + P GKE     F       + A   S        + G+  SA  H +R   AT  
Sbjct: 208 AYLRVCPFGKERDAPLFRAVRGGPLAARAISQVMADARMQLGLPASATPHALRHSFATHL 267

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
            DAG     +    G  ++   + YT   D  RL  
Sbjct: 268 LDAGGDLRAIQELLGHASLSTTQAYT-AVDTARLMD 302


>gi|312887689|ref|ZP_07747278.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
 gi|311299784|gb|EFQ76864.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
          Length = 420

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 53/324 (16%), Positives = 109/324 (33%), Gaps = 46/324 (14%)

Query: 44  IPAYMSALTGSTPKREYINS-----PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESY 98
           + AY  A+    P              +   T + L + Y        LA  +  ++ + 
Sbjct: 78  VDAYQEAIIQQKPLTPENIRNTFLGQDEAAHTFQDLFN-YHNEYEKQVLAKGTMKNYYTT 136

Query: 99  FDQIIR-----------KSGDFDYRKITTKHIRSGVESRKHTPSSAI-----QFLTSMRV 142
            D I++                 Y+ I    +      +K  P         + L   + 
Sbjct: 137 QDYILQFLKKSKKPAGWDITQLSYKFIADFELFLRTFKKKDDPQPLNNNGVMKHLERFKK 196

Query: 143 LFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQQFKSFWSEGSQ---PRLAFEF 198
           +   AV  E++  +P   V+ + K  ++     T+E++   ++   +  +    R  F F
Sbjct: 197 MINMAVTIEWLDKDPF--VKHKLKFTSKERGYLTEEELAVVETKELKTDKLIYVRDLFLF 254

Query: 199 LLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVELPDGFMKLLAM-----T 248
             Y+GL   D+      +L            + QK+   + + L     +++A       
Sbjct: 255 GCYTGLSYIDAINLTANNLMIGIDKEHWLLTQRQKSSKPVKLPLLPLAAQIIARHRHDPR 314

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSAT-ISADAGATAH 305
            I   T F     + ++  + + + K  A + G++K  S H  R   AT ++   G    
Sbjct: 315 AISNGTIF-----RPISNQKLNDYLKDLARECGIDKNFSFHLARHTFATTVTLANGVPIE 369

Query: 306 ELMATYGWKTVDQAETYTKGADRI 329
            +    G   +   + Y K  +R 
Sbjct: 370 TVSKMLGHTKISTTQIYAKVVERK 393


>gi|90962617|ref|YP_536533.1| Phage integrase [Lactobacillus salivarius UCC118]
 gi|90821811|gb|ABE00450.1| Phage integrase [Lactobacillus salivarius UCC118]
          Length = 381

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 59/307 (19%), Positives = 105/307 (34%), Gaps = 57/307 (18%)

Query: 67  KPTTLKWLISEYRK---------SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK 117
           K      ++ E+           +  +  L  N         + +     D    KIT +
Sbjct: 66  KSGKFGDVLDEWLALHKETVKASTWQFIELRAN---------NHVRPYFKDMYVDKITLR 116

Query: 118 HIRSGVES-RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK---TEGIR- 172
           H +  V    K  P + +  L+ ++    +A+R   +  NP L V +PK++   ++    
Sbjct: 117 HCQDFVNKTFKKAPVAYVYSLSIVKNTLDYALRLGMIESNPMLYVIKPKKQASISDKHDN 176

Query: 173 PWTKEDMQQFKSFWSEGS-QPRLAFEFLLYSGLRCSDSCRAGVQHLQ------------- 218
            + K+++++F     + S +    F  L YSG+R  +        L              
Sbjct: 177 YYNKDELKKFLDVAKDTSLKKYTLFRLLAYSGMRIGECLALTWHDLDYKNNTIAINKTLA 236

Query: 219 --NNIFSIKTQKTGTIITVELPD----------GFMKLLAMTPIG------KETFFINND 260
             NN   I+T KT     V   D             +   +  +G      K+  F N  
Sbjct: 237 RTNNGIKIQTPKTKASNRVISLDNETIQVLKMWQLEQRKQLLKVGINAMDSKQLIFSNGK 296

Query: 261 KQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
              +      +  K  A KAG++  + HG R   AT+   +G    ++ A  G   V   
Sbjct: 297 NSFIIVPTVRLAIKQIAKKAGIHSITTHGFRHTHATLLFASGLDIKQVQARLGHSNVQTT 356

Query: 320 -ETYTKG 325
              YT  
Sbjct: 357 LNIYTHA 363


>gi|170719429|ref|YP_001747117.1| site-specific tyrosine recombinase XerC [Pseudomonas putida W619]
 gi|254799352|sp|B1J1V8|XERC_PSEPW RecName: Full=Tyrosine recombinase xerC
 gi|169757432|gb|ACA70748.1| tyrosine recombinase XerC [Pseudomonas putida W619]
          Length = 299

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 33/259 (12%), Positives = 88/259 (33%), Gaps = 19/259 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRK------SGDFDYRKITTKHIRSGVESRKHTPSSAIQFLT 138
             ++ ++ +++    +++I        +G    +    + + +    +  +  S  + L+
Sbjct: 16  RQVSEHTLLAYRRDLEKVIEYCNTQGIAGWGALQIQQLRQLIARQHHQGQSSRSLARLLS 75

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW-TKEDMQQFKSFWS---EGSQPRL 194
           ++R L+++  R+     +P   +  PK +    +   T   +Q             + + 
Sbjct: 76  AVRGLYRYLNREGLCQHDPASGLSAPKGERRLPKVLDTDRALQLLDGGVDDDFIARRDQA 135

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLA------- 246
             E    SGLR S+     ++HL      ++   K G    + +     + +        
Sbjct: 136 ILELFYSSGLRLSELTNLDLEHLDLAAGLVQVLGKGGKARVLPVGRKAREAMQQWLRLRG 195

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAK-ATKAGVNKSAHGVRKFSATISADAGATAH 305
           +        FI+    ++      +  KA    + G +   H +R   A+   ++     
Sbjct: 196 IGGPRDGAVFISRQGNRLGPRAIQMRVKAAGERELGQHLHPHMLRHSFASHVLESSQDLR 255

Query: 306 ELMATYGWKTVDQAETYTK 324
            +    G   +   + YT 
Sbjct: 256 AVQEMLGHADISTTQIYTH 274


>gi|83944764|ref|ZP_00957130.1| integrase/recombinase XerC, putative [Oceanicaulis alexandrii
           HTCC2633]
 gi|83851546|gb|EAP89401.1| integrase/recombinase XerC, putative [Oceanicaulis alexandrii
           HTCC2633]
          Length = 313

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 40/281 (14%), Positives = 84/281 (29%), Gaps = 31/281 (11%)

Query: 85  GSLAVNSRISFESYFDQIIRKS-----GDFDYRKITTKHIRSGVESRKHT------PSSA 133
             L+  +  +++     +         G    + ++                    P + 
Sbjct: 27  RRLSPRTVEAYDRDLSGLFEFLTGHLGGRLTLKALSDLSSADWRAWLADRRRDGVGPRTL 86

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLS-VERPKRKTEGIRPWTKEDMQQFKSFWS----- 187
            + L++ R  F +  R+ +   NP L  VE PK +    RP ++   +            
Sbjct: 87  QRGLSAARTFFSYGRRR-WGLDNPALGLVESPKAQRRQPRPVSESAAKSLLKEAETGAKE 145

Query: 188 --EGSQPRLAFEFLLYSGLRCSDSCRA-GVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
              G++       L   GLR S++    G  H    +  +   K G    V +     + 
Sbjct: 146 PWIGARDAAVLSLLYGCGLRISEALALTGRDHPLPEVLRV-AGKGGKTRIVPVLPAVRQA 204

Query: 245 LAM-------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSAT 295
           ++             E  F  +    + A       +   ++ G+  +A  H +R   AT
Sbjct: 205 VSAYVDACPYQIERDEPLFRASRGGPLQARAMQSAMQTMRSRLGLPATATPHALRHAFAT 264

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
                G     +    G  ++   + Y        + I  +
Sbjct: 265 HLLAHGGDLRAIQDLLGHASLSTTQIYADIEQSRLIAIHAA 305


>gi|119709809|ref|YP_919149.1| phage integrase family protein [Thermofilum pendens Hrk 5]
 gi|119525915|gb|ABL79286.1| phage integrase family protein [Thermofilum pendens Hrk 5]
          Length = 278

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 46/275 (16%), Positives = 97/275 (35%), Gaps = 23/275 (8%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
            KP  ++ L+  Y         + N+  ++ S      +   D    K       S +E 
Sbjct: 6   AKPEDIRALVENYLGVVKALR-SHNTYKTYASVLFAYAKFVEDT--GKPDPAAFISWLEK 62

Query: 126 RK-HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
                 +S       +R   K+A    +        +   K+     +    ED+++  S
Sbjct: 63  NGWEKRTSIRTAYVVLRGFHKFA-GLPWT-------LPPVKKPESVPKALGTEDVRKLLS 114

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL---QNNIFSIKTQKTGTIIT-VELPDG 240
             S     R    FLL +GLR S+   +  + +    +  + ++ +  G  +  V L   
Sbjct: 115 VASPA--EREVIVFLLKTGLRVSEFVHSRCEDVLVVGDGRYMLRVRGKGDKVRLVPLTKD 172

Query: 241 FMKLLAMTPIGKETFFI---NNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATI 296
            ++++     G+  +      +  + ++A          A +AG+ + + H +R   AT+
Sbjct: 173 VVEIIKARCTGRAGYIFPSPLDPDKPVSARSIQHLVSRVARRAGLQRVTPHTLRHTYATL 232

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
             + G     +    G   +   + YTK  D  R+
Sbjct: 233 LLNNGVDIRTIQTLLGHAQLTTTQVYTK-VDVARM 266


>gi|9630419|ref|NP_046850.1| gp33 [Mycobacterium phage D29]
 gi|300669623|sp|Q38361|VINT_BPMD2 RecName: Full=Integrase
 gi|3172283|gb|AAC18476.1| integrase [Mycobacterium phage D29]
          Length = 356

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 59/332 (17%), Positives = 112/332 (33%), Gaps = 36/332 (10%)

Query: 24  YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP--RKKPTTLKWL-ISEY-R 79
           Y     G+R   P  +++        A        E    P  R+K      + + EY +
Sbjct: 5   YVSPIDGQRYFGPRNYDNRMDAEAWLASEKRLIDNEEWTPPAEREKKAAASAITVEEYTK 64

Query: 80  KSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR-KHTPSSAIQFL 137
           K      LA  ++  + ++   +I    GD    ++T   +R+      K  P++     
Sbjct: 65  KWIAERDLAGGTKDLYSTHARKRIYPVLGDTPVAEMTPALVRAWWAGMGKQYPTARRHAY 124

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE 197
             +R +   AV  + V+ NPC  +E+       +   T E++             R+A  
Sbjct: 125 NVLRAVMNTAVEDKLVSENPCR-IEQKAPAERDVEALTPEELDVVAG--EVFEHYRVAVY 181

Query: 198 FLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTII----------------TVELPD 239
            L ++ LR  +      + +        ++ ++    +                 V +P 
Sbjct: 182 ILAWTSLRFGELIEIRRKDIVDDGETMKLRVRRGAARVGEKIVVGNTKTVRSKRPVTVPP 241

Query: 240 GFMKLLA--------MTPIGKETFFINNDKQKMNATQFSIWFKA-KATKAGVNKSAHGVR 290
               ++         M    +         Q+++ + F+   K   A     +   H +R
Sbjct: 242 HVAAMIREHMADRTKMNKGPEALLVTTTRGQRLSKSAFTRSLKKGYAKIGRPDLRIHDLR 301

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETY 322
              AT++A AGAT  ELM   G  T   A  Y
Sbjct: 302 AVGATLAAQAGATTKELMVRLGHTTPRMAMKY 333


>gi|118617636|ref|YP_905968.1| site-specific tyrosine recombinase XerC [Mycobacterium ulcerans
           Agy99]
 gi|118569746|gb|ABL04497.1| integrase/recombinase XerC [Mycobacterium ulcerans Agy99]
          Length = 302

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 37/267 (13%), Positives = 86/267 (32%), Gaps = 26/267 (9%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHTPSSA---IQFLTSM 140
             + ++R ++      ++        D R ++   +RS + +     ++     +  +++
Sbjct: 21  GRSAHTRRAYLGDLRSLLDYLAGRGADLRALSLPVLRSWLATAAGAGAARTTLARRTSAV 80

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW--------SEGSQP 192
           +    WAVR+  +A +P   ++ PK          ++      +              + 
Sbjct: 81  KAFTAWAVRRGLLATDPAARLQVPKAHRTLPAVLRQDQALAAMTAAKSSAQQGDPLALRD 140

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-----ELPDGFMKLLA- 246
           RL  E L  +G+R S+     +  +      ++    G             +     LA 
Sbjct: 141 RLIVELLYATGIRVSELRGLDIDDVDTGHRLVRVLGKGNKQRTAPFGQPAAEALQAWLAD 200

Query: 247 -----MTPIGKETFFINNDKQKMNATQFSIWFKA--KATKAGVNKSAHGVRKFSATISAD 299
                 T        +    ++++  Q          A     +   HG+R  +AT   +
Sbjct: 201 GRPALATAESGPALLLGARGRRLDVRQARTVVHQTIAAVDGAPDMGPHGLRHSAATHLLE 260

Query: 300 AGATAHELMATYGWKTVDQAETYTKGA 326
            GA    +    G  ++   + YT  A
Sbjct: 261 GGADLRVVQELLGHSSLATTQLYTHVA 287


>gi|302335890|ref|YP_003801097.1| tyrosine recombinase XerD [Olsenella uli DSM 7084]
 gi|301319730|gb|ADK68217.1| tyrosine recombinase XerD [Olsenella uli DSM 7084]
          Length = 321

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 40/293 (13%), Positives = 97/293 (33%), Gaps = 46/293 (15%)

Query: 88  AVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKH---TPSSAIQFLTSMR 141
           + N+  ++     + +      G  D   ++   I + +E+      +PSS  + + +++
Sbjct: 21  SPNTLEAYGRDLGRYVAHLRGRGADDPDAVSRHDIEAYLETLAEGGLSPSSVQRSVAAIK 80

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF-------------KSFWSE 188
              ++ V ++    +P   +  P++        + E + +              ++    
Sbjct: 81  GFHRFMVSEQITENHPTADLPLPRKALHLPDTLSHEQVFRLLDEPFQDACRPAPRALADG 140

Query: 189 GS---------QPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVEL 237
           G+         + +   E L   GLR S+ C   ++ +   + +  I   K      V +
Sbjct: 141 GTDDSGAARFYRDKAILEVLYGCGLRVSELCSLELRDVLLDDEVLRI-LGKGSKERVVPI 199

Query: 238 P-----------DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-S 285
                       + +  LL   P      F+ +   K++        +      G+    
Sbjct: 200 LGTAARALGSYLEDWRPLLLKPPRICPAVFLGSRGTKISRQAVFGIVERYGRLTGIEGLH 259

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR--IRLGIKNS 336
            H +R   AT   + G     +    G  ++   + YT   DR  +R+    +
Sbjct: 260 PHSLRHSYATHLLEGGMDLRAVQELLGHASISTTQLYTH-VDRTHVRMAYLAA 311


>gi|323359719|ref|YP_004226115.1| integrase [Microbacterium testaceum StLB037]
 gi|323276090|dbj|BAJ76235.1| integrase [Microbacterium testaceum StLB037]
          Length = 301

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 35/267 (13%), Positives = 77/267 (28%), Gaps = 27/267 (10%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG-VESRKHTPSSAIQFLTSMRV- 142
             L+  +  ++ S    + R +GD    ++  + +R    E+     + A     +    
Sbjct: 18  RRLSPATVRAYRSDLADLARSTGDAPLDELDIEALRQWQWEATSAGRAKATAARRTSAAR 77

Query: 143 -LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS--------QPR 193
               WA  +  + ++P   +  PKR        T   + +  +  +  +        +  
Sbjct: 78  AFLSWAREEGLIEVDPSPRLVAPKRGRTLPVVATTSALDEVLAGAAAHAESGEPVALRDH 137

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-----ELPDGFMKLL--- 245
              E L  SG R S+ C   +  +     +++ +  G    V              +   
Sbjct: 138 AILEVLYGSGARVSELCGLDLDDVDRESRTLRVRGKGDRERVVPYGVPAARALEAYVVRG 197

Query: 246 ------AMTPIGKETFFINNDKQKMNATQFSIWFKA--KATKAGVNKSAHGVRKFSATIS 297
                     +     F+     ++                        H +R  +AT  
Sbjct: 198 RPVLSARGDGVAGPAVFLGARGARLGPRAVHALVSRVVAPVVGAETLGPHALRHSAATHL 257

Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324
            D GA    +    G  ++   + YT 
Sbjct: 258 LDGGADLRSVQEILGHASLGTTQIYTH 284


>gi|261867252|ref|YP_003255174.1| site-specific tyrosine recombinase XerC [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|293391244|ref|ZP_06635578.1| tyrosine recombinase XerC [Aggregatibacter actinomycetemcomitans
           D7S-1]
 gi|261412584|gb|ACX81955.1| tyrosine recombinase XerC [Aggregatibacter actinomycetemcomitans
           D11S-1]
 gi|290951778|gb|EFE01897.1| tyrosine recombinase XerC [Aggregatibacter actinomycetemcomitans
           D7S-1]
          Length = 296

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 40/263 (15%), Positives = 92/263 (34%), Gaps = 26/263 (9%)

Query: 85  GSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIR------SGVESRKHTPSSAIQ 135
             ++ ++  +++    +   I++ +G   ++++T   +R      S  +  K    S   
Sbjct: 16  RQVSPHTLSNYQRQLARVTAILQGAGITQWQQVTASVVRYVVAQSSKQDGLKEK--SLAL 73

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS---FWSEGSQP 192
            L+++R    + V+Q  + +NP   +  PK+     +    + +Q   +         + 
Sbjct: 74  RLSALRRFLTYLVQQGELKVNPATGISAPKQAKHLPKNIDTDQVQLLLANDSKEPIDIRD 133

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMK 243
           R   E L  SGLR S+     +  +      ++    G    V          +      
Sbjct: 134 RAIIELLYSSGLRLSELQGLNLNSIHLRSREVRVIGKGNKERVVPFGRYASHAIQQWLKV 193

Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAG 301
            L   P      F++    +M+     +  +    + G+N   + H +R   AT   +A 
Sbjct: 194 RLLFNP-KDNALFVSQLGNRMSHRAIQMRLETWGIRQGLNSHLNPHKLRHSFATHMLEAS 252

Query: 302 ATAHELMATYGWKTVDQAETYTK 324
           +    +    G   +   + YT 
Sbjct: 253 SDLRAVQELLGHSNLSTTQIYTH 275


>gi|256820383|ref|YP_003141662.1| integrase family protein [Capnocytophaga ochracea DSM 7271]
 gi|256581966|gb|ACU93101.1| integrase family protein [Capnocytophaga ochracea DSM 7271]
          Length = 307

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 39/253 (15%), Positives = 94/253 (37%), Gaps = 22/253 (8%)

Query: 93  ISFESYFDQIIRKSG-DFDYRKITTKHIRSGVESRKH---TPSSAIQFLTSMRVLFKWAV 148
            SFE +   +  + G D    +   + I+  +        +  S  + L++++  + +  
Sbjct: 29  RSFEKFIKNLYEEKGEDCCLEQADQEDIKKWIIHLSDETISFRSINRKLSALKTYYNFLK 88

Query: 149 RQEYVAINPC-LSVERPKRKTEGIRPWTKEDMQQFKSFWS-----EGSQPRLAFEFLLYS 202
           + + + I+P    +   K + +   P+++ ++++  SF+S     +  + R   E L  +
Sbjct: 89  KTKQIEISPFEKGIFLLKTEKKHKLPFSEAEIEKVLSFFSSKDSFDEVRNRAVIETLYAT 148

Query: 203 GLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPI---------GK 252
           G+R S+     V  +      IK   K      + +       L    +          +
Sbjct: 149 GIRRSELSGLKVSDVDFEQKQIKVLGKGDKERYIPIIPELENTLKEYLVLREEVKNEKSQ 208

Query: 253 ETFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSAHGVRKFSATISADAGATAHELMAT 310
           +  F+  + +K+ +T       +         + S H +R   A+   D GA  + +   
Sbjct: 209 DYLFLVKNGKKIYSTLVYRIINSYFSVVTTKKDVSPHVLRHSFASHLLDNGADLYTVKEL 268

Query: 311 YGWKTVDQAETYT 323
            G  ++   + YT
Sbjct: 269 LGHSSLASTQVYT 281


>gi|148544102|ref|YP_001271472.1| phage integrase family protein [Lactobacillus reuteri DSM 20016]
 gi|184153472|ref|YP_001841813.1| integrase [Lactobacillus reuteri JCM 1112]
 gi|227364526|ref|ZP_03848588.1| phage integrase/recombinase [Lactobacillus reuteri MM2-3]
 gi|325682358|ref|ZP_08161875.1| phage integrase family integrase/recombinase [Lactobacillus reuteri
           MM4-1A]
 gi|148531136|gb|ABQ83135.1| phage integrase family protein [Lactobacillus reuteri DSM 20016]
 gi|183224816|dbj|BAG25333.1| integrase [Lactobacillus reuteri JCM 1112]
 gi|227070435|gb|EEI08796.1| phage integrase/recombinase [Lactobacillus reuteri MM2-3]
 gi|324978197|gb|EGC15147.1| phage integrase family integrase/recombinase [Lactobacillus reuteri
           MM4-1A]
          Length = 324

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 39/264 (14%), Positives = 94/264 (35%), Gaps = 14/264 (5%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--- 128
           + L+++Y  S      +  S   +++   + +   G  + ++I T  +R+ + + +    
Sbjct: 47  QQLLTKYFASKRAEGCSEKSLKYYKTTITKALASIG-KNAKEIVTDELRNYLTNYQEVHN 105

Query: 129 -TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            +  +       +   F W   ++Y+  +P   + + K  T     +T E++++ +    
Sbjct: 106 SSKVTIDNIRRILSSFFNWLEDEDYIIKSPVRRIHKVKVSTTVKETYTDEELEKLRDNCK 165

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG-----FM 242
           +  +     +FL  +G+R  +        +            G+   +   D        
Sbjct: 166 D-IRDLAMIDFLASTGMRVGELVLLNRDDINFQERECIVFGKGSKERIAYFDARAKLHLQ 224

Query: 243 KLLAMTPIGKETFFINNDKQK--MNATQFSIWFKAKATKAGVNKS-AHGVRKFSATISAD 299
           K L       E  F++  ++   +         K    + G+++   H  R+  AT + D
Sbjct: 225 KYLYTRTDSNEALFVSLYRKHTRLTIGGVESRLKHLGKRLGISRVYPHKFRRTLATTAID 284

Query: 300 AGATAHELMATYGWKTVDQAETYT 323
            G    +L    G K +D    Y 
Sbjct: 285 KGMPIEQLQRLLGHKRIDTTLHYA 308


>gi|186687194|ref|YP_001870337.1| phage integrase family protein [Nostoc punctiforme PCC 73102]
 gi|186469497|gb|ACC85296.1| phage integrase family protein [Nostoc punctiforme PCC 73102]
          Length = 337

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 55/309 (17%), Positives = 108/309 (34%), Gaps = 35/309 (11%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWL-ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF 109
           L   T       +  + PT ++W+ + E+ +S    +LA NSR  +E    + +    + 
Sbjct: 17  LNAETALLTGRTASTRPPTDIRWVKVLEFLRS---NNLAPNSRKLYERELKRFLA-WSEL 72

Query: 110 DYRKITTKHI-------RSGVESRKHTP---SSAIQFLTSMRVLFKWA--VRQEYVAINP 157
            Y ++  +H+       R  + +    P   SS    + +++  FKW      E +A NP
Sbjct: 73  HYHELRPRHLALYKEYLRDEIRTDAGNPLSKSSINAGIAALKSFFKWMSYTYPEIIATNP 132

Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFWSE--GSQPR-LAFEFLLYSGLRCSDSCRAGV 214
            L ++  K      +  T E+M++  S       ++ R  A   +L  GLR  +  +  V
Sbjct: 133 TLGIKLEKVPLPPAQSLTPEEMERVWSALELLQETKQRDTALVHILSHGLRAGEVVQLNV 192

Query: 215 QHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM----------TPIGKETFFINND---- 260
                 +  +   KT     V L     ++LA                    I++     
Sbjct: 193 GSFDGKLLFLPDTKTNEPRLVPLRKESREVLAEYLQLRSQQGEVLNSDSPLMISHHASYK 252

Query: 261 KQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
            ++++        +     A + +   H  R   AT     G          G ++    
Sbjct: 253 GERLSYHGIYFAVENIGELAQIEDLHPHSFRHTYATDLLLLGVDPSHARKLTGHQSEKAF 312

Query: 320 ETYTKGADR 328
             YT  +++
Sbjct: 313 RRYTLRSEQ 321


>gi|229587180|ref|YP_002845681.1| site-specific tyrosine recombinase XerC [Rickettsia africae ESF-5]
 gi|259710437|sp|C3PLU8|XERC_RICAE RecName: Full=Tyrosine recombinase xerC
 gi|228022230|gb|ACP53938.1| Tyrosine recombinase XerC [Rickettsia africae ESF-5]
          Length = 305

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 48/284 (16%), Positives = 107/284 (37%), Gaps = 28/284 (9%)

Query: 69  TTLKWLISEYRKSAHWG-SLAVNSRISFESYFDQIIR-----KSGDFDYRKITTKHIRSG 122
           T+++ LI++++K      + + ++ IS+ +     +       S       I T  IR  
Sbjct: 4   TSIQALINKWQKYLVLQRNYSNHTVISYNNDLKHFLEFMNYYNSELVTINHIKTADIRLI 63

Query: 123 VESRKH------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
                       T SS  + L++++  +++  +   +  +   S++ PK+     +  ++
Sbjct: 64  RSWLAKRNCDNFTASSISRGLSAVKNFYRFLEKTTQLNSHIIFSIKSPKKTKLLPKALSE 123

Query: 177 ED-------MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229
           +D       ++++ +      + +     +  SGLR S++      HLQN  F     K 
Sbjct: 124 DDVVISLEHIEEYGNVKWIELRNKALLVLIYASGLRISEALSITKLHLQNLEFIRIIGKG 183

Query: 230 GTIITVELPD-------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
                +            ++++L       E  F     +K+    F+          G+
Sbjct: 184 SKERIIPWLPIAKNLITQYLEILPYKLGDNEPIFRGKQGKKLQPPVFNRELIKLKHFYGL 243

Query: 283 --NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             + +AH  R   A+   + GA    L    G K++   ++YTK
Sbjct: 244 PQHLTAHSFRHSFASHLLEHGADLRSLQELLGHKSLSTTQSYTK 287


>gi|150010322|ref|YP_001305065.1| site-specific recombinase [Parabacteroides distasonis ATCC 8503]
 gi|149938746|gb|ABR45443.1| site-specific recombinase [Parabacteroides distasonis ATCC 8503]
          Length = 383

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 45/257 (17%), Positives = 89/257 (34%), Gaps = 24/257 (9%)

Query: 94  SFESYFDQIIRKSGD-FDYRKITTKHIRSGVE-----SRKH-----TPSSAIQFLTSMRV 142
             +     +I+  GD    +++   +    ++      RK        ++A  F   +  
Sbjct: 118 QIDKAIKHLIKYRGDTVTMKEVDKPYCLGFIDYLNNAKRKDGKLMAKVTTAGYF-RCLNC 176

Query: 143 LFKWAVRQEYVAINPCLSV---ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199
               AV++E +  NP   +   +R K         T ++++   +        + A+ F 
Sbjct: 177 ALNLAVKEEIIPYNPITKINPDDRIKIPESTREYLTVDEIKLLIASKCINEPTKQAYLFS 236

Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIKTQ----KTGTIITVELPDGFMKLLAMTPIGKETF 255
            + GLR  D        +  +    + +    KT   + + L D  +K +      K+T 
Sbjct: 237 CFCGLRLGDIQALTWGDVILDGSQYRVKIVMKKTQKTLYLPLSDEALKWMPKRDDAKDT- 295

Query: 256 FINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGW 313
             +       AT  ++  K  A  +G+ K+   H  R   AT+    GA  +      G 
Sbjct: 296 --DKIFHLPYATYINVVLKTWAQNSGITKTITFHTARHTFATMMLTLGADLYTTSKLLGH 353

Query: 314 KTVDQAETYTKGADRIR 330
             V     Y K  D+ +
Sbjct: 354 TQVKTTTIYAKIVDKKK 370


>gi|322509106|gb|ADX04560.1| xerC [Acinetobacter baumannii 1656-2]
 gi|323519136|gb|ADX93517.1| site-specific recombinase XerC [Acinetobacter baumannii
           TCDC-AB0715]
          Length = 295

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 47/274 (17%), Positives = 95/274 (34%), Gaps = 27/274 (9%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVESR----KHTPS 131
           + K     + + ++  ++E      +   +    D R +    +R  +  R    + + S
Sbjct: 2   WLKERKIQNQSEHTITAYERDVKSFLEFCELKKVDLRNVEASDLREYLAQRVEQDQLSSS 61

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG-- 189
           S  + LTS+R   KWA + +Y+ INP    +  ++          E + Q          
Sbjct: 62  SMQRHLTSIRQFMKWAEQGKYLEINPTDDFKLKRQPRPLPGMIDIETVNQILDQPMPEKP 121

Query: 190 ------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-----ELP 238
                  + +   E L  SGLR ++     ++ +  N   ++    G    +     +  
Sbjct: 122 VDQQLWLRDKAMLELLYSSGLRLAELQGLTIKDIDFNRQLVRITGKGNKTRIVPFGKKAK 181

Query: 239 DGFMKLLAMTPIGKETF------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVR 290
           +  +  L +  I K  F      FI+     +   Q     K +A +AGV  +   H +R
Sbjct: 182 ESLLNWLKIYNIWKGHFDQNASVFISQRGGALTPRQIEKRVKLQAQRAGVNVDLHPHLLR 241

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              A+    +      +    G   +   + YT 
Sbjct: 242 HCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTH 275


>gi|260642076|ref|ZP_05414491.2| site-specific recombinase, phage integrase family [Bacteroides
           finegoldii DSM 17565]
 gi|260623620|gb|EEX46491.1| site-specific recombinase, phage integrase family [Bacteroides
           finegoldii DSM 17565]
          Length = 420

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 47/293 (16%), Positives = 96/293 (32%), Gaps = 30/293 (10%)

Query: 65  RKKPTTLKWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRS 121
           ++   TL   + EY +    + +  +  R       +  ++++   D     +     R 
Sbjct: 120 KRSCITLVDFLKEYEQEKFGFSASTLKGRRDLRGKIETYLKETNRPDIVLANVDVDFCRG 179

Query: 122 GVESRKHTPS------------SAIQFLTSMRVLFKWAVRQEYVAINPCLSV---ERPKR 166
            ++  ++  +            +A      +      AVR   ++ NP  S+   E+ + 
Sbjct: 180 FIDFLRYAKNGVRKDGSVISNGAAHHHQAVLNGALNKAVRDGILSANPLKSISSKEKYQP 239

Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIF 222
                   T E+M+   +        + AF F  ++GLR  D        +         
Sbjct: 240 SESMREYLTLEEMKVVMAASCPHEDVKRAFLFSCFTGLRLGDVRSLTWGKIVKAPDGKTL 299

Query: 223 SIKT--QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280
            ++T  +KT  I+ V L    +  L      +E  F+         +      +     A
Sbjct: 300 FVRTKMEKTQKIVNVPLSKEAIDCLNPKENNEEPIFML----PAGTSNIERNIEKWMQDA 355

Query: 281 GVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            + K  + H  R   AT+    GA  +      G   V+    Y K  D+ ++
Sbjct: 356 KITKHITYHCSRHTYATMLLTLGADIYTTSKLLGHSNVNTTSIYAKIVDKKKV 408


>gi|325570911|ref|ZP_08146560.1| site-specific tyrosine recombinase XerC [Enterococcus casseliflavus
           ATCC 12755]
 gi|325156315|gb|EGC68498.1| site-specific tyrosine recombinase XerC [Enterococcus casseliflavus
           ATCC 12755]
          Length = 312

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 45/281 (16%), Positives = 103/281 (36%), Gaps = 36/281 (12%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFE---SYFDQIIRKSGDFDYRKITTKHIR---SGVE 124
            ++LI E          +  ++ +++     F   +++SG+ D   +  + +R   S + 
Sbjct: 24  FRYLIVE-------RGYSEKTKKAYQEDMGDFFHFLKESGNEDPLAVEYRDVRVYLSYLT 76

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
            R+++ +S  + + S+R  +++  + E V  NP   +   K+  +  R + +++M     
Sbjct: 77  EREYSRNSISRKMASLRSFYQFLTKHEIVKENPFAYIHLKKKNAKLPRFFYEKEMDALFQ 136

Query: 185 F----WSEGSQPRLAFEFLLYSGLRCSDS--CRAGVQHLQNNIFSIKTQKTGTI------ 232
                     + +   E L  SGLR S+      G    ++ +  I  +           
Sbjct: 137 SVAGDEPLQQRNQALLEVLYGSGLRVSECSSLTLGAIDWESGVLLIHGKGNKDRYVPFGS 196

Query: 233 -----ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ----FSIWFKAKATKAGVN 283
                +   L  G  +L+       E  F+N+    + AT      +   +  +  + ++
Sbjct: 197 YAQAAVKRYLSSGRKQLMEKQNKEHEILFVNHLGDGITATGIEYVLNQIIRKSSLDSKIH 256

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              H +R   AT   + GA    +    G   +   + Y  
Sbjct: 257 --PHMLRHTFATHLLNNGADMRTVQELLGHANLSTTQIYAH 295


>gi|78485001|ref|YP_390926.1| Phage integrase [Thiomicrospira crunogena XCL-2]
 gi|78363287|gb|ABB41252.1| Phage integrase [Thiomicrospira crunogena XCL-2]
          Length = 372

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 50/371 (13%), Positives = 115/371 (30%), Gaps = 41/371 (11%)

Query: 1   MTPSLR-----LPPFVTKERT-RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSA---L 51
           M+P  R     LPP +  ++  R+GK+ Y ++     +       ++  +   ++    +
Sbjct: 1   MSPKAREISLGLPPNLYAKKDKRNGKVYYQYKSPLDGKFYSFGTDKNQAVNDAVALNHNI 60

Query: 52  TGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY 111
             +  K       +      +     Y  S +   L  N+  + +S ++      G+   
Sbjct: 61  YDAIQKSRVEKLKKPACILFRDFWQIYFDSMNDRKLKPNTIKTRKSQYEACYPFIGNTPL 120

Query: 112 RKITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
            ++  K +   +     +    +A    ++++  FK A+ Q  V  NP      P    +
Sbjct: 121 NEVRVKDVADIINHYIEQDKRRTASAIRSTLKDAFKEAIHQGIVEDNPAEKTRAPSVPVK 180

Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229
             R +  + + +      E +    A    L +G R SD  +   +        +  +K 
Sbjct: 181 RQR-FNLDQVLKVLEINKE-TWLENAILLALITGQRVSDIAKMKFKDFDGEYLYVIQKKN 238

Query: 230 GT----------------IITVELPDGFMKLLAMTPIGKETFFINNDK---------QKM 264
                              +++ L D   K               N+          ++ 
Sbjct: 239 RQGAPEKRYKYHKDIKLDALSMTLGDIINKCRDNVISKHLVHHTKNEGLAKKGTSCHEQT 298

Query: 265 NATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            + +F+   +       +  + H +R   +     A     E     G K+    E YT 
Sbjct: 299 ISKRFTWLVREVVDGQNLP-TFHELR-SLSARLYKAQGNISE-QKVLGHKSAKSTEIYTD 355

Query: 325 GADRIRLGIKN 335
                 + ++ 
Sbjct: 356 ARGSEWVAVEM 366


>gi|328554916|gb|AEB25408.1| integrase [Bacillus amyloliquefaciens TA208]
          Length = 343

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 94/278 (33%), Gaps = 41/278 (14%)

Query: 86  SLAVNSRISFE---SYF-DQIIRKSGDFDYRKITTKHIRSGVESRK-HTPS--------- 131
            L   +   ++    YF + +          +ITT+ +R+ +   K   P          
Sbjct: 40  GLRERTLTDYKKMWRYFTEWLNDNYEVTYIDEITTEILRNYINYMKYDKPRYHGHKYIKS 99

Query: 132 ----------SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
                     +    L +++ LF +  R+E + +NP   V+  ++  +    +T ++++ 
Sbjct: 100 DDNKVGLSDTTININLRTIKALFNYLDREELIEVNPATRVKLLRQDIDLTNCFTDDEIKA 159

Query: 182 FKS----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK--TQKTGTII 233
                      G +   A   LL SGLR  +      + +   +   +I     K     
Sbjct: 160 ILRQPNLRDYVGFRDYCAMNCLLDSGLRIEELLSLREKDIDFSSRFITINADVSKNRKHR 219

Query: 234 TVELPDGFMKLLAMTPIGK------ETFFINNDKQKMNATQFSIWFKAKATKAGV---NK 284
            V +    +KLL             +  F+++  + + A  F+   K  A KAGV     
Sbjct: 220 LVPISAHCVKLLLQLITENKSHFTTDRIFLSSYGEPLGANHFNKRLKYYAEKAGVKDKKV 279

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           +AH  R   A      G     L    GW  +     Y
Sbjct: 280 TAHVYRHTWAKTMILNGCDPFTLQKIGGWSDIRTMRRY 317


>gi|167553414|ref|ZP_02347163.1| integrase [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
 gi|205322115|gb|EDZ09954.1| integrase [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
          Length = 359

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 49/283 (17%), Positives = 91/283 (32%), Gaps = 26/283 (9%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--K 127
           T+   I  Y       SL+VN+     +    +  K G+    ++TT+HI   +ES   +
Sbjct: 75  TVSAWIDRYEVLLQRRSLSVNTYKIRSNQLATVREKMGEIILAEVTTRHIAKFLESWITE 134

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINP--CLSVERPKRKTEGIRPWTKEDMQQFKSF 185
              + A    + +  +F+ A+ + ++  NP     +   K   E ++  T    +     
Sbjct: 135 GKKTMAGAMRSVLSDMFREAIVEGHIVKNPVEATRIPEIKVARERLQLETYNATRTAAEH 194

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK-- 243
                   LA +  L +G R  D        + +N   +   KTG  I + L        
Sbjct: 195 LPVWFP--LAMDLALVTGQRREDIVNMKFSDVFDNRLYVTQIKTGMKIAIPLSLTLQAPG 252

Query: 244 ------LLAMTPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNKS-----A 286
                 +     + +  F I      N+    ++    +  F      +GVN S      
Sbjct: 253 LRPGTVIDRCRLVSRTDFMISAGIRENSPTGNIHPDGLTKTFVKARKASGVNFSNNPPTF 312

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           H +R   A                 G  + +  + Y    D  
Sbjct: 313 HEIR-SLAGRLYKNELGEEFAQKLLGHTSENTKKLYLDERDNK 354


>gi|169346819|ref|ZP_02865770.1| prophage lambdaba04, site-specific recombinase, phage integrase
           family [Clostridium perfringens C str. JGS1495]
 gi|169297101|gb|EDS79223.1| prophage lambdaba04, site-specific recombinase, phage integrase
           family [Clostridium perfringens C str. JGS1495]
          Length = 379

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 55/358 (15%), Positives = 116/358 (32%), Gaps = 45/358 (12%)

Query: 17  RHGKIIYY-FRKG--HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
           + G   YY F  G   G+R R       T   A  +                +   T   
Sbjct: 7   KRGNTWYYSFDLGKVDGKRKRKEKGGFKTKTEAQKALREAINDYENCGTIVNETNITFSD 66

Query: 74  LISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESR---KHT 129
            +  + K     +   N++  +     + +    G +  + ++   ++  +  +     +
Sbjct: 67  YLDYWFKEYVTINCKFNTQKYYLGIIQNHLKPILGSYKLKSLSPNVLQEFLNKKYISGLS 126

Query: 130 PSSAIQFLTSMRVLFKWAV-RQEYVAINPCLSVERPKRKT-----EGIRPWTKEDMQQFK 183
            SS   F   +    K AV   +++  NP   V+ PK        E I+  T ++ +   
Sbjct: 127 KSSLSNFYGVLSGSLKMAVYPYKFIKENPMQYVKIPKNSNTKVTQEKIKVLTLDEFKIIL 186

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----------------NNIFSIKTQ 227
           + +  GS   +  +    +GLR  + C     ++                 N IF + T 
Sbjct: 187 NRFPFGSNFYIPLQIAFNTGLRGGEVCALTWDNIDFDNKTLTVEHTLIEKGNGIFELGTP 246

Query: 228 KTGTI-ITVELPDGFMKLLAMTPI--------------GKETFFINNDKQKMNATQFSIW 272
           KT +   T+ L D  + +L                            + Q +  +     
Sbjct: 247 KTKSSFRTIALGDTLINILKKHRTFQKENKLKYGEYYSNSNYICTKENGQLITTSSLKYL 306

Query: 273 FKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRI 329
            +    +  ++ + H +R   AT+  + GA   ++    G   +    +TY+   ++I
Sbjct: 307 SRVVNYELLIDFNFHALRHTHATMLLEGGANFKDIQKRLGHSKLSTTMDTYSHVTNKI 364


>gi|310639697|ref|YP_003944455.1| integrase family protein [Paenibacillus polymyxa SC2]
 gi|309244647|gb|ADO54214.1| Integrase family protein [Paenibacillus polymyxa SC2]
          Length = 374

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 43/277 (15%), Positives = 99/277 (35%), Gaps = 38/277 (13%)

Query: 89  VNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSG----VESRKHTPSSAIQFLTSMRVL 143
             +   +++     I    G  + +K+ + HI+      ++ +  +P++  +  + +R  
Sbjct: 81  ETTTYGYKNILYKHISHFFGGIELQKLQSGHIQQYYKHLMDEKNLSPNTVHKHHSLIRKA 140

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203
             + ++Q+ V  N   +VE PKRK    + +TKE + +        ++  +     +Y G
Sbjct: 141 LDYGLKQQLVYRNVADAVELPKRKRYEGKSYTKEQLIELLKKVK-NTKLEIPIYLAVYLG 199

Query: 204 LRCSDSCRAGVQHLQ---------------NNIFSIKTQKT-GTIITVELPDGFMKLLAM 247
           LR  +      +++                      K  KT  +  ++ + D    LL M
Sbjct: 200 LRREEIIGLKWKYVDFESRTLHIFEVRTSAGKAIITKAPKTEKSRRSLHINDDLYSLLKM 259

Query: 248 TPIGKE--------------TFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKF 292
             + +E                + +++ +       +  FK    K  + K   H +R  
Sbjct: 260 HKVKQEELKNMLGSAYDNAGYVYSHDNGKPYRVNSVTEQFKTFLEKQQLPKIRLHDLRHS 319

Query: 293 SATISADAGATAHELMATYGWKTVDQA-ETYTKGADR 328
            A++  + G     +    G   +    + YT   D+
Sbjct: 320 FASVLYNQGTDLKAISEALGHSDIGTTNKIYTHRFDK 356


>gi|302343156|ref|YP_003807685.1| integrase family protein [Desulfarculus baarsii DSM 2075]
 gi|301639769|gb|ADK85091.1| integrase family protein [Desulfarculus baarsii DSM 2075]
          Length = 409

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 53/356 (14%), Positives = 113/356 (31%), Gaps = 49/356 (13%)

Query: 11  VTKERTRHGKIIYYF---------RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYI 61
           V +E+     + + F         RK   +R+ L     +  I A +          E +
Sbjct: 4   VVREKDSGSGVWWVFVNEDGHRTSRKVGSKRLALEV---AEKIKAKLVLRKCGLVAPEKV 60

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121
             P  +     WL   + K     +     R   + Y   +  K G     +I+   +R 
Sbjct: 61  KLPLFRDYAQIWL-EGFIKHTRRPATYERYRDVLKKY---VTPKLGSLPLDQISRGQVRD 116

Query: 122 ---GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER----PKRKTEGIRPW 174
              G+ S+  + +S      ++  +  +AV +E +  NP + + +     +     + P 
Sbjct: 117 LLLGIYSKGLSKASVCIVRDTISGVMGFAVDEELIPSNPVIGITKRLNLGRDDGNTVEPM 176

Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLY-SGLRCSDSCRAGVQHLQ--NNIFSIKTQ---- 227
           T E++  F    ++    R  F    + +G+R  +        +        ++      
Sbjct: 177 THEEVALFLETCAKHYPERYPFFLTAFRTGMRLGELLALQWGDIDWHGRFIVVRRSFKGG 236

Query: 228 -----KTGTIITVELPDGFMKLLAMTPIGKE------------TFFINNDKQKMNATQFS 270
                KTG    V++ +   + L      ++                +     +      
Sbjct: 237 YTTSTKTGKARRVDMSNQLFETLCALQTKRKREAVGAGRGELAPLIFHKGGLPIAQNSAR 296

Query: 271 IWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ-AETYTK 324
             FK    KAG+     H +R   A++   AG +   +    G  ++    + Y  
Sbjct: 297 NHFKRILQKAGLREMRVHDIRHTFASLLLSAGQSPVYVKEQLGHSSISMTVDIYGH 352


>gi|302341552|ref|YP_003806081.1| integrase family protein [Desulfarculus baarsii DSM 2075]
 gi|301638165|gb|ADK83487.1| integrase family protein [Desulfarculus baarsii DSM 2075]
          Length = 401

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 55/334 (16%), Positives = 109/334 (32%), Gaps = 22/334 (6%)

Query: 10  FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
           FV + R++ G+     R   G+  ++      T      S +             R  P 
Sbjct: 41  FVAQYRSQTGRTR---RMALGQVGKITLDEARTLAQRVFSDVAKGLDPSANRKQGRTAP- 96

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVES-RK 127
           T+  L + Y            S++      ++ II + G      ++   +     +  +
Sbjct: 97  TVAELCARYLAEHAQAKKKPASQVRDRRLIERFIIPQLGGEKVNTLSRADVAKLHNAIGR 156

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAI---NPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
            TP  A + L  +  +   A+R         NP   +ER +      R  + +++ Q   
Sbjct: 157 ETPIQANRTLAVVSKMMTLAIRWGLRDEAKGNPAQFIERFREAKRE-RYLSADELAQLGQ 215

Query: 185 FWSE------GSQPRL-AFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITV 235
             +       G +P + A  FLL +G R  ++     + +        +   KTG    +
Sbjct: 216 ALAAAENEGWGFRPAIDAIRFLLLTGARVGEALSLRWEWIDRERACIFLPDSKTGRKA-L 274

Query: 236 ELPDGFMKLLA--MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFS 293
            +    + +L       G    F      +      + W K +A         H +R   
Sbjct: 275 PIGGAVLAMLDGLAKQAGNPHVFPGQSLGRPLVDINTTWRKVRARAGLEGVRLHDLRHSY 334

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           A++ A +G +   + A  G         Y+  A+
Sbjct: 335 ASVGAASGLSLTLIGAILGHSEPSTTARYSHLAN 368


>gi|307578043|gb|ADN53661.1| integrase [Staphylococcus aureus]
          Length = 390

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 63/377 (16%), Positives = 125/377 (33%), Gaps = 57/377 (15%)

Query: 23  YYFRKGHGRRIR---LPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT--LKWLISE 77
           + +R   G+ ++     Y   S F     +       +R+        P+T   K +  +
Sbjct: 11  WRYRISLGKDVKTGKYKYISNSGFKRKSDAKHHAEMIERQLRTGDYIAPSTSTFKQVADD 70

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA--IQ 135
           + K      + V+S  + E      I +  +   + I     +  V       S      
Sbjct: 71  WLKQYA-NDVKVSSVRAREKAIHHAIERFNNKPIQTIKKHDYQRFVNDISAQYSKNYVDS 129

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRK--------TEGIRP-WTKEDMQQFKSFW 186
            + S  ++FK+A   + + I P   ++RPK+K        TE  +    K+++ QF    
Sbjct: 130 IIASTNMIFKYAYDMKLIRILPSEGIKRPKKKVSVEELEDTEIHKKFLEKDELFQFLEVA 189

Query: 187 SEGSQPRLAFEF---LLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ-------------- 227
                P+ +FE    L Y+G+R  +        +   NN  +I                 
Sbjct: 190 KNHHSPQNSFEVFCXLAYTGMRAGELLALKWSDIDFENNTINITKTYYNPNNNKKQYQIL 249

Query: 228 --KTGTII-TVELPDGFMKLLAMTPIG------------KETFFINNDKQKMNATQFSIW 272
             KT + I  + +    +KLL                      F + +   +   +  +W
Sbjct: 250 TPKTESSIGKIPVDPHVIKLLKNYKTDVQDTWKNELYVDNNFVFTDVNGYPLVIKKLQLW 309

Query: 273 FKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADR 328
            KA      +     S H  R     +  +AG    E+      K ++     Y K  + 
Sbjct: 310 IKAILKNTDITNKQISTHSFRHTHCALLIEAGVHIKEIQERLRHKDINTTMNIYAKITNS 369

Query: 329 IRLGIKNSRRISSVVDS 345
            +     S++ S ++++
Sbjct: 370 YKK--DASQKFSKLMEN 384


>gi|319404836|emb|CBI78437.1| integrase/recombinase XerC [Bartonella rochalimae ATCC BAA-1498]
          Length = 321

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 38/262 (14%), Positives = 80/262 (30%), Gaps = 25/262 (9%)

Query: 88  AVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESRK---HTPSSAIQFLTSM 140
           AV        +   + +  G          +    +R+ +  R+    +  S  + + S+
Sbjct: 43  AVAYERDTRQFLFFLCQHLGYQPTLDDLADLRVADLRAYLAYRRTQNISARSLSRNMASL 102

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE-------DMQQFKSFWSEGSQPR 193
           R  F +  R++ V +     V  PK      +P T E       +  Q ++     ++  
Sbjct: 103 RSFFNYLSREKLVNVPAAKLVRTPKHPKSLPKPLTIESALRIVKEENQQETEPWIIARNT 162

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI--KTQKTGTIITVELPDGFMKL----LAM 247
                L   G+R S++     +   +          K G    + L     K     L  
Sbjct: 163 AILILLYGCGMRISEALALTPEQFADPSIKSLSVNGKGGKTRLIPLIPIVHKAIENYLKC 222

Query: 248 TP---IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGA 302
            P   +  +  F+    + +         +    + G+ ++   H +R   AT     G 
Sbjct: 223 CPYPLVNTQPIFLGVRGKPLQPAIIQRTVQNLRARLGLPETTTPHALRHSFATHLLSRGG 282

Query: 303 TAHELMATYGWKTVDQAETYTK 324
               +    G   +   + YT 
Sbjct: 283 DLRTIQELLGHACLSTTQIYTH 304


>gi|282851276|ref|ZP_06260641.1| site-specific recombinase, phage integrase family [Lactobacillus
           gasseri 224-1]
 gi|282557244|gb|EFB62841.1| site-specific recombinase, phage integrase family [Lactobacillus
           gasseri 224-1]
          Length = 374

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 58/359 (16%), Positives = 126/359 (35%), Gaps = 38/359 (10%)

Query: 6   RLPPFVTKERTRHGKIIYYFRK-----GHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60
           +L   +TK   + GK+ Y F+        G+R+ +      T+  A  +A+      +  
Sbjct: 4   QLNKEITKYTLKSGKVRYRFKTYLGMDDSGKRVMVTRQGFKTYQEA--NAVYKKLRAKGT 61

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
               + K  T++ + + +  +    +    +    ++Y + + +  G+    KI    ++
Sbjct: 62  QGYTKPKQATVEQVWTLWFDTYKKHAKESTAHKMQQTYDNHVKKDFGNVYIDKIKPAKVQ 121

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP-------KRKTEGIRP 173
             + +              +  L  +A+   Y  INP   V  P       +R T+    
Sbjct: 122 KWINNLSTVLVRYRPAFNLLNNLINYAIVLGYANINPTKKVIVPAKTSVKKRRDTKNNYY 181

Query: 174 WTKEDMQQFKSFWSEGSQ-PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
            + E +++F +   + S+   + F+ L  +GLR S++       +      I   KT  +
Sbjct: 182 DSPEQVREFLNAAKKDSEIAYMYFKLLSSTGLRKSEALALKWDDIDFEKNVIHVTKTINV 241

Query: 233 ----ITVELPDGFMKLLAMTPIGKET--------------FFINNDKQKMNATQFSIW-F 273
               + +  P    +     P+ K                 F   +   +N    + W  
Sbjct: 242 GFNNVELIAPPKTKESYRDVPLSKSLKADLMKYRSNIYDFVFCKANGDHLNLATPAHWLQ 301

Query: 274 KAKATKAGVNK-SAHGVRKFSATISAD--AGATAHELMATYGWKTVDQA-ETYTKGADR 328
           +     + + + + HG R   AT+      G T  ++    G  T+D     YT  + +
Sbjct: 302 RIYKNNSNLKQITIHGFRHTFATLMLQPGTGNTPKDVQKILGHSTIDMTLNIYTHESKK 360


>gi|294012386|ref|YP_003545846.1| integrase/recombinase XerD [Sphingobium japonicum UT26S]
 gi|292675716|dbj|BAI97234.1| integrase/recombinase XerD [Sphingobium japonicum UT26S]
          Length = 305

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 49/284 (17%), Positives = 96/284 (33%), Gaps = 19/284 (6%)

Query: 72  KWLISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
             LI  + +  A     + N+ +++ +         G         +         +   
Sbjct: 5   AALIDRFLEMMAAERGASRNTLLAYRADLTGAGEIVGGLS-SATRDRLAELTTAWAELAA 63

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----- 185
           SS  +  +++R  + +   +   A NP  ++ RP  +    +  + +++    +      
Sbjct: 64  SSVARKSSALRAFYAFLEEEGLRADNPSSALPRPVTRRSLPKILSTQEVDSLFALIAGKL 123

Query: 186 ---WSEGSQPRLA--FEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPD 239
                     RL+   E L  SGLR ++      + L ++  F I   K      V + D
Sbjct: 124 AVEHPAPLDLRLSALIELLYGSGLRATELVSLPRRALASDRPFLILKGKGARERLVPISD 183

Query: 240 GFMKLLAMTP---IGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFS 293
                +A           +   + K  ++  +     KA A  AG+     S H +R   
Sbjct: 184 RARAAVAAWLHHVPADSLWLFPSGKSHVSRIRLYQMVKALAAAAGIAPERVSPHVLRHAF 243

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
           AT   + GA    L +  G   +   + YT    R  + + NSR
Sbjct: 244 ATHLLEGGADLRALQSMLGHADIGTTQIYTHVDSRRLVELVNSR 287


>gi|119898154|ref|YP_933367.1| phage integrase family site specific recombinase [Azoarcus sp.
           BH72]
 gi|119670567|emb|CAL94480.1| site-specific recombinase, phage integrase family [Azoarcus sp.
           BH72]
          Length = 358

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 56/339 (16%), Positives = 115/339 (33%), Gaps = 36/339 (10%)

Query: 11  VTKERTRHGKIIYYFRKGHGRRIRLPY-PHESTFIPAYMSALTGSTPKREYINSPR---- 65
           +TK + +HG            +IRL   P E+        A T +      I + +    
Sbjct: 4   ITKRQGKHGTTY-------KVQIRLKGYPAETATFDRLSDARTWAAQTETAIKAGKHFGV 56

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
            K  TL  L  +Y ++    + ++ S  +   +     +  G      ++   I    + 
Sbjct: 57  AKRRTLHELAEKYEQAV---ADSLKSFEARRGHLAYWRQAFGSSALADVSPALIAEHRDR 113

Query: 126 RKHTP--------SSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTK 176
                        ++  +++ ++  LF +AV++ ++V  NP   V +       +R  + 
Sbjct: 114 LTKRTTERGTVSLATVNRYIATLSALFTFAVKELQWVEANPVERVRKFGESPGRVRYLSD 173

Query: 177 EDMQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ--KTG 230
           ++     +   E   P L  A    L +G R ++      Q +        ++    K G
Sbjct: 174 QERAALLTACRESRNPYLYPAVVLALSTGARQAEITTLRWQQVDFARRTIVLREGETKNG 233

Query: 231 TIITVEL----PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKS 285
               + L     D    L  +  I  +  F      +         +     +AG+ +  
Sbjct: 234 AGRVLPLTGEALDLLRDLAKVRDIRDDRVFPVASTTRAF-NSIKGAWDGAVKRAGISDFR 292

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            H +R  +A+    AG  + E+    G KT+     Y+ 
Sbjct: 293 WHDLRHTAASYLTMAGIGSMEVAKVLGHKTLQMTARYSH 331


>gi|157829099|ref|YP_001495341.1| site-specific tyrosine recombinase XerC [Rickettsia rickettsii str.
           'Sheila Smith']
 gi|165933823|ref|YP_001650612.1| site-specific tyrosine recombinase XerC [Rickettsia rickettsii str.
           Iowa]
 gi|166918901|sp|A8GTV8|XERC_RICRS RecName: Full=Tyrosine recombinase xerC
 gi|189030082|sp|B0BVE6|XERC_RICRO RecName: Full=Tyrosine recombinase xerC
 gi|157801580|gb|ABV76833.1| site-specific tyrosine recombinase XerC [Rickettsia rickettsii str.
           'Sheila Smith']
 gi|165908910|gb|ABY73206.1| integrase/recombinase (XerC/CodV family) [Rickettsia rickettsii
           str. Iowa]
          Length = 305

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 48/284 (16%), Positives = 106/284 (37%), Gaps = 28/284 (9%)

Query: 69  TTLKWLISEYRKSAHWG-SLAVNSRISFESYFDQIIR-----KSGDFDYRKITTKHIRSG 122
           T+++ LI++++K      + + ++ IS+ +     +       S       I T  IR  
Sbjct: 4   TSIQALINKWQKYLVLQRNYSNHTVISYNNDLKHFLEFMNYYNSELVTINHIKTADIRLI 63

Query: 123 VESRKHT------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
                         SS  + L++++  +++  +   +  +   S++ PK+     +  ++
Sbjct: 64  RSWLAKRNCDNFAASSISRGLSAVKNFYRFLEKTTQLNSHIIFSIKSPKKTKLLPKALSE 123

Query: 177 ED-------MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229
           +D       ++++ +      + +     +  SGLR S++      HLQN  F     K 
Sbjct: 124 DDVVISLEHIEEYGNIKWVELRNKALLVLIYASGLRISEALSITKLHLQNLEFIRIIGKG 183

Query: 230 GTIITVELPD-------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
                +            ++++L       E  F     +K+    F+          G+
Sbjct: 184 SKERIIPWLPIAKNLITQYLEILPYKLGDNEPIFRGKQGKKLQPPVFNRELIKLKHFYGL 243

Query: 283 --NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             + +AH  R   A+   + GA    L A  G K++   + YTK
Sbjct: 244 PQHLTAHSFRHSFASHLLEHGADLRSLQALLGHKSLSTTQNYTK 287


>gi|256825348|ref|YP_003149308.1| site-specific tyrosine recombinase XerD [Kytococcus sedentarius DSM
           20547]
 gi|256688741|gb|ACV06543.1| tyrosine recombinase XerD subunit [Kytococcus sedentarius DSM
           20547]
          Length = 316

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 39/272 (14%), Positives = 88/272 (32%), Gaps = 32/272 (11%)

Query: 85  GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVESRKHT---PSSAIQFLT 138
             L+ N+  ++          +  +G   +  +    +R  +     +    S+  + + 
Sbjct: 20  RGLSANTTSAYRRDLVAWVAHLDAAGRTSWPSVQAADVRQHLADLTASGRARSTVTRMVV 79

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS------------FW 186
           ++R    +A+ + +V ++    V  P       +  + +++ +                 
Sbjct: 80  AVRRFHAFALAEGWVEVDVAADVAPPAAVQPLPKALSLDEVARLIESTGPVEGGADAVEL 139

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELP------- 238
           +   + R   E L  +G R S+     V  +  +   ++   K      V L        
Sbjct: 140 AVARRDRAVLELLYGTGARVSEVTSLDVDDVDLDGLVVRLVGKGSKERHVPLGGAAAAAV 199

Query: 239 -DGF---MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKF 292
            D       +LA    G     +N   +++          A   +AG+  + S H +R  
Sbjct: 200 GDWLATGRPVLAARGSGGAALLLNQRGRRLGRQSAWALVTAAGRRAGLGEHLSPHTLRHS 259

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324
            AT     GA    +    G  +V   + YT+
Sbjct: 260 YATHLMAGGADVRVVQELLGHASVTTTQIYTR 291


>gi|294794983|ref|ZP_06760118.1| putative site-specific recombinase, phage integrase family
           [Veillonella sp. 3_1_44]
 gi|294454345|gb|EFG22719.1| putative site-specific recombinase, phage integrase family
           [Veillonella sp. 3_1_44]
          Length = 357

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 49/308 (15%), Positives = 102/308 (33%), Gaps = 39/308 (12%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESR-K 127
           +L   I+ + +     S+   +  S+    ++ I  K G     +I    +R   ES   
Sbjct: 53  SLNTWINIWLQLKE-KSITPATYQSYTGIINRYIRDKIGGVKLAEIKPNTLRYVFESMDG 111

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI-RPWTKEDMQQFKSFW 186
            +  +    +T +  + + AV+ + +  N   +++RPK          + ++++ F S  
Sbjct: 112 LSSRTISYTMTILSSILEQAVKDDIIPKNYMKNIDRPKHVKVRHMVTLSADEVKNFLSNI 171

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-----------------NNIFSIKTQKT 229
           S  S+    F+    +G+R S+        +                    + S  T+ T
Sbjct: 172 S-NSEHHALFKLAFATGMRRSELLGLRWSDIDFKKSTISISQTALKIGSTAVISNTTKTT 230

Query: 230 GTIITVEL-PDGFMKLLAMTPI------------GKETFFINNDKQKMNATQFSIWFKAK 276
            +   + +  D   +L+                      F           + S   K  
Sbjct: 231 SSKRIIAIDTDTIQELMKHKTTIDKRRIKTMNWINNNLVFPGIKGAPRCPDEVSKLCKKY 290

Query: 277 ATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIK 334
           A   G    + HG R   AT+  + GA    +    G  +  +  +TY+      ++   
Sbjct: 291 ANLIGKPTFTMHGTRHTHATLLIENGANMKAIQERLGHASFQETMDTYSHVT--PKMEDD 348

Query: 335 NSRRISSV 342
              RIS +
Sbjct: 349 IVERISKI 356


>gi|255692176|ref|ZP_05415851.1| tyrosine type site-specific recombinase [Bacteroides finegoldii DSM
           17565]
 gi|299146444|ref|ZP_07039512.1| putative tyrosine recombinase [Bacteroides sp. 3_1_23]
 gi|260622041|gb|EEX44912.1| tyrosine type site-specific recombinase [Bacteroides finegoldii DSM
           17565]
 gi|298516935|gb|EFI40816.1| putative tyrosine recombinase [Bacteroides sp. 3_1_23]
          Length = 383

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 37/260 (14%), Positives = 82/260 (31%), Gaps = 13/260 (5%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAI 134
           Y +       ++++  +++ YF   +      D   +T + I S +      KH  ++  
Sbjct: 111 YLELLEQKRYSLSTIKAYKIYFSDFMEYHKGHDLDLLTVEDINSYMLHMVKEKHISATQQ 170

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
               +    +   VR+          + R K         ++E+M+   +        R 
Sbjct: 171 NMRINAIKFYYEKVRKGRRQY--YGGIARAKEYKALPEVLSREEMKSIFAQLPNRKH-RC 227

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-----ITVELPDGFMKLLAMTP 249
               +  +GLR S+      + + +    I+    G       ++ +L +          
Sbjct: 228 MISLIYSAGLRRSELLNLTPKDIISERMLIRIAGKGKKCRYSLLSEKLLNELRAYYREYR 287

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHEL 307
             K  F      ++ + +      K  A KAG+      H +R   AT   + G     +
Sbjct: 288 PQKWLFEGEQSGEQYSPSALVKVLKEAARKAGIKHRVHLHMLRHTFATHLLEQGTDLRTI 347

Query: 308 MATYGWKTVDQAETYTKGAD 327
               G   +     Y   ++
Sbjct: 348 QELMGHTDIKTTAIYLHVSN 367


>gi|302383500|ref|YP_003819323.1| integrase [Brevundimonas subvibrioides ATCC 15264]
 gi|302194128|gb|ADL01700.1| integrase family protein [Brevundimonas subvibrioides ATCC 15264]
          Length = 300

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 42/277 (15%), Positives = 99/277 (35%), Gaps = 25/277 (9%)

Query: 75  ISEYRKSAH-WGSLAVNSRISFESYF---DQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
           I  Y +        + ++  ++       +  I   G     +   +   +G+  R  + 
Sbjct: 6   IEAYLEMMAVERDASPHTLSAYARDLADAEASIDGGGLIAADEAAIEAWFAGLAPRGLSA 65

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-- 188
           ++A +  +++R  +++A+ + +   +P   ++ PK+     R   +E++    +  +   
Sbjct: 66  ATAARRRSAIRQFYRFAMGEGWRTDDPSRRLDAPKQGRPLPRTLNREEVVGLLTASAARD 125

Query: 189 ---GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKL 244
              G +     E    SGLR S+     V+ ++ +  + I   K G      L     + 
Sbjct: 126 GAAGLRMIALVELAYASGLRVSELLGLRVEAVRRDPAYLIVRGKGGKERLAPLNASAREA 185

Query: 245 LAMTPIGKE---------TFFINNDK---QKMNATQFSIWFKAKATKAGVN---KSAHGV 289
           +    I ++         + ++         +   +F+      A  AG++    S H +
Sbjct: 186 VKAWLIARDARRPEKAPDSPWLFPSGAASGHLTPRRFAQMLDQAAVDAGIDPARVSPHVL 245

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           R   AT   + GA    +    G   +   + YT  A
Sbjct: 246 RHAFATHLLEGGADLRVVQTLLGHADIATTQIYTHVA 282


>gi|313896449|ref|ZP_07830000.1| site-specific recombinase, phage integrase family [Selenomonas sp.
           oral taxon 137 str. F0430]
 gi|312974873|gb|EFR40337.1| site-specific recombinase, phage integrase family [Selenomonas sp.
           oral taxon 137 str. F0430]
          Length = 331

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 41/279 (14%), Positives = 94/279 (33%), Gaps = 15/279 (5%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH----T 129
           L++ +  +      +  +   +++   +++    D    +ITT  +R  +   +     +
Sbjct: 56  LLTMFTAAKKVEGCSERTLNYYQTTLLKVLGSF-DKHITRITTDDLRKYLSEYQEEHRCS 114

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            S+       +   F W   + Y+  +P   + + K        +T E ++Q +   +  
Sbjct: 115 KSNIDNIRRILSSFFAWLEEENYILKSPVRRIHKIKTAKVVKETYTDEALEQMRDNCT-N 173

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDG----FMKL 244
           S+     + L  +G+R  +  R     +   +   I   K      V             
Sbjct: 174 SRDLAMIDLLASTGMRVGELVRLNRSDVDFESRECIVFGKGSKERPVYFDARTKIHLKNY 233

Query: 245 LAMTPIGKETFFINNDKQK--MNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG 301
           L          F++  K    ++ +   I  +    K G+ K   H  R+  AT + D G
Sbjct: 234 LDSRIDDNPALFVSLQKPHNRLHISGVEIRLRDMGKKLGIPKVHPHKFRRTLATRAIDKG 293

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
               ++    G   +D    Y    D+  +   + + I+
Sbjct: 294 MPIEQVQQLLGHSKIDTTMEYA-MVDQNNVKNSHRKFIA 331


>gi|312126649|ref|YP_003991523.1| integrase family protein [Caldicellulosiruptor hydrothermalis 108]
 gi|311776668|gb|ADQ06154.1| integrase family protein [Caldicellulosiruptor hydrothermalis 108]
          Length = 283

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 34/261 (13%), Positives = 86/261 (32%), Gaps = 34/261 (13%)

Query: 89  VNSRISFESYFDQIIRKSGDFDYRKIT-------TKHIRSGVES-RKHTPSSAIQFLTSM 140
            ++  ++    +  ++   +   R+          ++ RS + + +K    +    L+++
Sbjct: 15  ESTAKTYIRAVENFLKWYSESYDREFDGKVLPLHIRNYRSYLMTVKKLNAKTINNNLSAI 74

Query: 141 RVLFKWAVRQEYVAINPCL----------SVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           +    + V +  +  NP L           V   K + +      +  +          +
Sbjct: 75  KSYCDFLVEKGVIETNPVLDDYFIDVQEPGVSPAKLENKDFNKLEEAVV------HYGSA 128

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250
           +    F  L Y+G+R S+ C   +  +  +   I   K G    + L     + +     
Sbjct: 129 RDIAIFYTLAYTGVRVSELCNIRLNDIVKDELIIYYGKGGKQRKIPLNRTVREAIDNWLK 188

Query: 251 GK--------ETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAG 301
            +        +  FI+   + ++ +      K     A +     H +R +    + + G
Sbjct: 189 ERGKYKYSHLDYLFISERGK-LDRSTVYRIIKEYCRIAKIEPIGPHQLRHYFCKRALEKG 247

Query: 302 ATAHELMATYGWKTVDQAETY 322
            T  E+ A  G   +   + Y
Sbjct: 248 FTITEVAALAGHSRITTTQVY 268


>gi|227893507|ref|ZP_04011312.1| integrase-recombinase [Lactobacillus ultunensis DSM 16047]
 gi|227864677|gb|EEJ72098.1| integrase-recombinase [Lactobacillus ultunensis DSM 16047]
          Length = 302

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 81/219 (36%), Gaps = 17/219 (7%)

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           +  RK   SS  + ++S+   +++  R+  + I+P  ++   + + +    + + +++Q 
Sbjct: 64  LADRKLARSSQQRQMSSLHSFYRFLTRRRIIKIDPTQAITLRRGEKKLPEFFYQPEIKQV 123

Query: 183 KSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-ITVEL 237
                       +    FE    +G+R S+     ++ +  ++ +I     G     V  
Sbjct: 124 FDSLQGNKPLTVRNLALFELFYATGMRVSEVSGLTLKQIDLSLQTILVHGKGNKDRYVAF 183

Query: 238 PDGFMKLL----------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS-- 285
            D   K L           +    ++  F++N  + ++        +    +AG++    
Sbjct: 184 DDRTKKSLVNYLENARPKLLKDETEQHVFLSNLGKPISDRGIQYVMQKTFNQAGISGKVH 243

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            H +R   AT   + GA    +    G   +   + YT 
Sbjct: 244 PHELRHTFATAMLNNGADLRSVQELLGHSDLSATQIYTH 282


>gi|298249905|ref|ZP_06973709.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
 gi|297547909|gb|EFH81776.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
          Length = 369

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 45/312 (14%), Positives = 101/312 (32%), Gaps = 43/312 (13%)

Query: 59  EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFES-----YFDQIIRKSGDFDYRK 113
           +      +   TL   +  +  + H    +  +   ++      +   +          +
Sbjct: 21  QEAKEVSRATLTLDDALRIFLSAQHASGNSGATHKDYQIAVGNVFIRYMKETLNRVYLEE 80

Query: 114 ITTKHIRSGVESRKH---------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP 164
           I    I   +   +          +  S   +   + V FKW V  +++  NP  +++  
Sbjct: 81  IEEVDIILWLSHLREATSKFGRPYSSRSIQTYYRDVVVFFKWLVAHKHLKENPAENLKPV 140

Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEG---------------SQPRLAFEFLLYSGLRCSDS 209
           K +   IR +T++++ +  +                    S+ R     LL +G+R S++
Sbjct: 141 KTEKALIRVFTEDELVRLDAACDRAPKGKSLTPDERKALSSRDRAFLWLLLSTGIRVSEA 200

Query: 210 CRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKLLAM--------TPIGKETFFINN 259
           C      +     +  ++  K      +       + L          T    E  F+N 
Sbjct: 201 CGLLFGDIEWDMGMIYVR-GKGAKERKIPFGKIARQHLDTYIRYWRGGTTNHDEYVFLNA 259

Query: 260 DKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTV 316
               +  +     F      AG++    S H  R + A  +   G  +  L    G +T+
Sbjct: 260 WGAPLRRSAAECIFTRLKKIAGIDDKRVSPHTCRHWFAVNAIKNGVPSTVLQGWLGHETL 319

Query: 317 DQAETYTKGADR 328
           +   TY + A++
Sbjct: 320 EMINTYVRLAEQ 331


>gi|17233092|ref|NP_490182.1| integrase/recombinase [Nostoc sp. PCC 7120]
 gi|17135614|dbj|BAB78160.1| integrase/recombinase [Nostoc sp. PCC 7120]
          Length = 342

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 52/306 (16%), Positives = 106/306 (34%), Gaps = 35/306 (11%)

Query: 54  STPKREYINSPRKKPTTLKWL-ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYR 112
           +  K +  ++    PT ++W+ + E+ +S    +LA NSR  +E    + +       Y 
Sbjct: 24  AIQKSKSRSAKIAAPTDIRWIKVLEFLRS---TNLAPNSRKLYERELKRFLG-WTQLHYH 79

Query: 113 KITTKHI-------RSGVESRKHTP---SSAIQFLTSMRVLFKWA--VRQEYVAINPCLS 160
           ++  +H+       R  V++    P   +S    + +++  F W      E +  NP L 
Sbjct: 80  ELRPRHLGLYKEYLRDEVKTDSGKPLSKASINAGVAALKSFFNWMCYTYPEIITTNPTLG 139

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSE--GSQPR-LAFEFLLYSGLRCSDSCRAGVQHL 217
           ++  K      +  T E M++  S       ++ R  A   +L  GLR  +  +  V   
Sbjct: 140 IKLEKVPLPPAQSLTDEQMERVWSALELLGETKERDTALVHILSHGLRAGEIVQLNVGSF 199

Query: 218 QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE----------TFFINND----KQK 263
              +  +   KT     V L      +L      ++             I++       +
Sbjct: 200 DGKLLFLPDTKTNEPRLVPLRKESRDVLEAYLRSRQQQGEELNSLTPLMISHHASYKGDR 259

Query: 264 MNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           ++        +     AG+ +   H  R   AT     G          G ++      Y
Sbjct: 260 LSYHGIYFAVEKIGEFAGIEDLHPHQFRHTYATELLLLGVDPSHARKLTGHQSEKAFRRY 319

Query: 323 TKGADR 328
           T  +++
Sbjct: 320 TLRSEQ 325


>gi|293374275|ref|ZP_06620603.1| site-specific recombinase, phage integrase family [Turicibacter
           sanguinis PC909]
 gi|292647108|gb|EFF65090.1| site-specific recombinase, phage integrase family [Turicibacter
           sanguinis PC909]
          Length = 374

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 58/371 (15%), Positives = 119/371 (32%), Gaps = 46/371 (12%)

Query: 13  KERTRHGKIIYYFRKG--HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
             R R  K  YYF  G   G+  +       T   A  +               +    T
Sbjct: 4   SVRKRGDKWSYYFTIGKVDGKYKKKEKSGFVTKKEAETALREALRQYETDGVVSKHSDYT 63

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           L+  I  +  +     L   +  +++      I  + G  + +K T   ++     +  T
Sbjct: 64  LQEYIQYWFDTIAINYLKFETMHNYKCVATKHIYPEIGHLNIKKATPTVLQKYFSEKLKT 123

Query: 130 PSSAIQFLTSMRVL----FKWAVRQEYVAINPCLSV--ERPKRKTEGIRPWTKEDMQQFK 183
             +A   ++ +R +    FK AV+Q  +  NP   +  +  K+K   +R   K D+    
Sbjct: 124 -YNADSIVSIIRNILSNTFKLAVKQNILPRNPMAQIELKSQKQKETAMRVVNKNDIDNLL 182

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----------------NNIFSIKTQ 227
               + ++  + F   +++G R  +        +                  N   + + 
Sbjct: 183 LEIKD-TRYYIPFIIAIHTGARRGEILGLTWDDVNFENNTLTINKILQYQQGNGLVLSST 241

Query: 228 KTGTII-TVELPD----GFMKLLAMTPIGKETF-----------FINNDKQKMNATQFSI 271
           KT + + TV +         +      + KE +             N+D   +N    S 
Sbjct: 242 KTSSSVRTVLMTSTLVHELQEYRKSQLLRKEYYGNHYFSEQSFVCCNDDGSPINPLSLSQ 301

Query: 272 WFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIR 330
           + K  + K G     H +R   AT+  +A      +    G + +      Y+   +  +
Sbjct: 302 FTKKISQKYGYRFRFHDLRHTHATMLLEADVNIKVIQQRLGHENIKTTLNVYSHLTN--K 359

Query: 331 LGIKNSRRISS 341
           L      +  +
Sbjct: 360 LDEDAINKFDN 370


>gi|265763064|ref|ZP_06091632.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_16]
 gi|263255672|gb|EEZ27018.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_16]
          Length = 380

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 40/216 (18%), Positives = 79/216 (36%), Gaps = 14/216 (6%)

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE---RPKRKTEGIRPWTKEDMQQF 182
           +  + ++ + +          AV  E +  NP   ++   +PKR+       T ++++  
Sbjct: 157 KNISANTQVHYYKVFHHCLNSAVIDEIITSNPMDKIKNEEKPKRRRTERAFLTIDELKIL 216

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVEL 237
                  +  + AF F  + GLR SD       +L+          +  QKT  I+++ L
Sbjct: 217 SQTDFHNATLKKAFLFSCFCGLRHSDIVALTWGNLKKGKVGKMELHMTQQKTQEILSLPL 276

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI-WFKAKATKAGVNK--SAHGVRKFSA 294
                + L   P+  +        + + +   +       A KAG+ K  + H  R   A
Sbjct: 277 S---KEALKQLPVRGKVPDTEKVFKGLISLGRTNEILPKWAAKAGIQKHITFHSARHTHA 333

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
           T+    GA  + +    G   +   + Y K  D  +
Sbjct: 334 TMMITLGADLYTVSKLLGHTNIQTTQIYAKIVDESK 369


>gi|293189843|ref|ZP_06608557.1| tyrosine recombinase XerC [Actinomyces odontolyticus F0309]
 gi|292821258|gb|EFF80203.1| tyrosine recombinase XerC [Actinomyces odontolyticus F0309]
          Length = 285

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 49/295 (16%), Positives = 91/295 (30%), Gaps = 40/295 (13%)

Query: 67  KPTTLKWLISEYRKSAHWGSL-AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
            P T+   + +      + SL A  +                      +T + +RS +  
Sbjct: 2   SPHTVSAYLGDLHSLMEFLSLDADATPEQLR---------------EALTQRAVRSWLAR 46

Query: 126 ---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
                   S+  +   ++R    WA+R+  +  +P   +  P+       P  + D +  
Sbjct: 47  TLADGGARSTIARHTAAIRNFTSWAMREGILVSDPAALLSSPRADQLLPSPLDESDARVL 106

Query: 183 ------KSFWSEGSQPRLA--FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TII 233
                 ++     SQ R     E     GLR S+ C   +  L     +++    G    
Sbjct: 107 LNTARDEAAAGGASQIRNWAILELTYACGLRVSEVCALDIPSLNREALTVRVVGKGNKER 166

Query: 234 TVELPDGFMKLLA----------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV- 282
            V         L                    F+ +   +++           A +AGV 
Sbjct: 167 VVPYGPPAADALDHWLVRGRPQLAGERSGNALFLGDKGGRIDPRIVRSMVHKTAARAGVH 226

Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
           + + HG+R  +AT     GA    +    G  ++   + YT   D  RL     R
Sbjct: 227 DIAPHGLRHSTATHLLQGGADLRAVQEMLGHSSLSTTQRYTH-VDTARLSAIYQR 280


>gi|238018829|ref|ZP_04599255.1| hypothetical protein VEIDISOL_00689 [Veillonella dispar ATCC 17748]
 gi|237864595|gb|EEP65885.1| hypothetical protein VEIDISOL_00689 [Veillonella dispar ATCC 17748]
          Length = 357

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 58/342 (16%), Positives = 121/342 (35%), Gaps = 53/342 (15%)

Query: 18  HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISE 77
           +GK  Y++  G  ++  +          AY+ +L         I + R           E
Sbjct: 17  NGKRKYFY--GTTKKAAIAE------RDAYVESLAQCANYDNTITTER---------WCE 59

Query: 78  YRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH-TPSSAIQ 135
           Y       +++ N+  S++      I+   G     +++  ++R+ ++S  H +  +   
Sbjct: 60  YWIRLKTDTVSQNTLSSYQYIIKTYIVPFIGSIRLVELSALNVRALMDSMSHLSARTISY 119

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE-GIRPWTKEDMQQFKSFWSEGSQPRL 194
            LT +R + K AV  E ++ N    V++PK++ +  +   +KE+++ F     +  +   
Sbjct: 120 TLTVLRAILKQAVMDEIISKNVATLVKKPKQERKREMVTLSKEEVETFLEQIDD-VEWHA 178

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNI-----------------FSIKTQKTGTIITVEL 237
            F+    +GLR S+        +                      S  T+ + +  ++ L
Sbjct: 179 LFKLAFTTGLRRSEILGLTWDDVNLKQKTLTVNQTVLRIDEVTTISKTTKNSSSRRSISL 238

Query: 238 PD----GFMKLLAMTP---------IGKETFFINNDKQKMNATQFSIWFKAKATKAG-VN 283
            D      +KL                    F        +  + S+  K  AT  G  +
Sbjct: 239 DDKTIAELLKLRTCVDKRRLKAPNWRNNNLVFPGKFGNPRDPAKVSLKCKKFATAIGRPD 298

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKT-VDQAETYTK 324
            + H  R   AT+  +AG     +    G  +     +TY+ 
Sbjct: 299 FTMHDTRHTHATLLLEAGVNFKVVQMRLGHSSYQQTMDTYSH 340


>gi|296117640|ref|ZP_06836224.1| tyrosine recombinase XerC [Corynebacterium ammoniagenes DSM 20306]
 gi|295969371|gb|EFG82612.1| tyrosine recombinase XerC [Corynebacterium ammoniagenes DSM 20306]
          Length = 281

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 38/267 (14%), Positives = 91/267 (34%), Gaps = 24/267 (8%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE---SRKHTP 130
           I ++ +   +    +  +   + S    + + + D  +      H+RS +    +     
Sbjct: 5   IYDFAEHQRYVLGRSEATIKGYTSDLLDLAQTTED--FASFNLAHLRSWLASAVAAGKAR 62

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ-QFKSFWSEG 189
           S+  +   + +    WAV+Q Y+  +    +  PK   +  +   +++      +  S  
Sbjct: 63  STLARRTAAAKAFSTWAVKQGYLRTDEAAKLSTPKVPKQLPKVLNEQEAATAMGNAHSVD 122

Query: 190 ----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV--------EL 237
                +     E L  +G+R S+     +  + ++  +I+    G    V        + 
Sbjct: 123 ELHSLRDAAMLELLYATGMRVSELTGIDLSDIDSSRQTIRVLGKGNKQRVVPYGQAAQKA 182

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATIS 297
            D ++   A         F+     +++        +     AG   S H +R  +AT  
Sbjct: 183 LDLWLARRAEMAKDPSALFVGTRGGRID----QRQVRRVVEAAG-QVSPHALRHSAATHM 237

Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324
            + GA    +    G  ++   + YT 
Sbjct: 238 LEGGADLRVVQELLGHSSLQTTQVYTH 264


>gi|189352421|ref|YP_001948048.1| tyrosine recombinase [Burkholderia multivorans ATCC 17616]
 gi|327197999|ref|YP_004306367.1| gp1 [Burkholderia phage KS5]
 gi|189336443|dbj|BAG45512.1| tyrosine recombinase [Burkholderia multivorans ATCC 17616]
 gi|310657133|gb|ADP02248.1| gp1 [Burkholderia phage KS5]
          Length = 235

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 71/229 (31%), Gaps = 39/229 (17%)

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG-----SQPR 193
            + ++F  AVR+     NP   V   K + +  R  T +++   ++    G     S  R
Sbjct: 1   MLSLIFMHAVRRGLCDGNPAREVGAAK-ERKRDRYITDDELDAVRAAIVAGADYKTSSAR 59

Query: 194 LAF---EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT----GTIITVELPDGFMKLLA 246
                 +    +  R  D      Q++ +   S    KT    G  + +E+     + L 
Sbjct: 60  SILCLVDLAYQTAQRIGDLLALNWQNVSDEGISFHPSKTVNSSGVRLLIEMTPDLRETLD 119

Query: 247 MTPIGKET----FFINNDKQKMNATQFSIWFKAKATKA-----------GV--------N 283
               GK T        +   +         +K    +A           G+         
Sbjct: 120 RARGGKVTAIGPVICTHTGGRFTYIGAYSAWKRACERARSTYEKECAKKGIEPNPLYLTG 179

Query: 284 KSAHGVRKFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
              H +R  + T      GA A +  +  G  T      YTK  +  R+
Sbjct: 180 MHFHDLRAKALTDLKRQRGAAAAQ--SLAGHTTESMTAHYTKAREVERV 226


>gi|160934246|ref|ZP_02081633.1| hypothetical protein CLOLEP_03117 [Clostridium leptum DSM 753]
 gi|156866919|gb|EDO60291.1| hypothetical protein CLOLEP_03117 [Clostridium leptum DSM 753]
          Length = 314

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 40/234 (17%), Positives = 86/234 (36%), Gaps = 16/234 (6%)

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEY-VAINPCLSVERPKRKTEGIRPWTKED-MQQF 182
            R++  ++  +   S+R  F++   + + +  NP   +E PK+K    +  T E  +   
Sbjct: 70  ERENKNAARARKSASLRAFFQYLTNKTHQLKENPVQELETPKQKKSLPKYLTLEQSIDLL 129

Query: 183 KSFW-SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241
            +       +        L  GLR ++     +  ++ +     T K      + L    
Sbjct: 130 NAVDGPFRERDYCILTLFLNCGLRLAELVGLNLNDIRPDHTMRVTGKGNKERMIYLNSAC 189

Query: 242 MKLL---------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGV 289
            K +          M+   K+  FI++  +++         +    K G++    SAH +
Sbjct: 190 QKAIEEYLKVRPNPMSVSDKKALFISHLNKRLGRQAVQNIVQKYLKKIGLDGQGYSAHKL 249

Query: 290 RKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
           R  +AT+    G      L    G + +   E YT  +++      ++  +S V
Sbjct: 250 RHTAATLMYQHGNVDIRVLKDILGHQNLGTTEIYTHLSNQQMEDAADANPLSKV 303


>gi|163813874|ref|ZP_02205268.1| hypothetical protein COPEUT_00027 [Coprococcus eutactus ATCC 27759]
 gi|226322754|ref|ZP_03798272.1| hypothetical protein COPCOM_00526 [Coprococcus comes ATCC 27758]
 gi|158450744|gb|EDP27739.1| hypothetical protein COPEUT_00027 [Coprococcus eutactus ATCC 27759]
 gi|225208915|gb|EEG91269.1| hypothetical protein COPCOM_00526 [Coprococcus comes ATCC 27758]
          Length = 363

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 54/317 (17%), Positives = 104/317 (32%), Gaps = 30/317 (9%)

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYR 112
              + + +++ R     L   I  Y  S     L   +  +        I+   G+    
Sbjct: 40  EFERSKKLSNERSMDMKLSDFIEIYF-SDKQNDLKDRTIKNKRYMMQQHIVPYFGNQMMS 98

Query: 113 KITTKHIRSGVESRKHTPSSAIQFL---TSMRVLFKWAVRQEYVAINPCLSVER-PKRKT 168
           +I    I       +    S          +  LF  A +   + +NPC  V+R     +
Sbjct: 99  EIKASQIIQWQNEIQKKGYSDSYLRMIQNQLTSLFTHAAKIYDLPVNPCKKVKRMGNSDS 158

Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----------- 217
             +  WT ++ +QF      G++  L FE L ++G R  +        +           
Sbjct: 159 RSLNFWTLDEYKQFIQTMEPGTRYYLMFEMLFWTGCRIGELLAITKADINFEKNQLSINK 218

Query: 218 ---QNNIFSIKTQ-KTG-TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW 272
              +  +  I T+ KT  +  T+E+P+   + +     G            +        
Sbjct: 219 TYYRTGMQDIITEPKTKQSFRTIEIPEFLKEEIKEFVDGHYGMPDTERLFPVVQEAVQHK 278

Query: 273 FKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIR 330
            K +   AGV K   H +R        + G     +    G K +     TY        
Sbjct: 279 MKRQIELAGVKKIRVHDIRHSHVAYLIEKGVEPLLIRDRLGHKDIRITLNTYGH------ 332

Query: 331 LGIKNSRRISSVVDSDD 347
           L     R+I++++D+++
Sbjct: 333 LYPNQQRKIANLLDNEN 349


>gi|324324345|gb|ADY19605.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family protein [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 374

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 46/292 (15%), Positives = 95/292 (32%), Gaps = 37/292 (12%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH 128
           TL   + E+ ++     +   + I++    + +II   G    + +   H +  V+S   
Sbjct: 64  TLSEYLQEWLENTAKQRVRDTTFINYRRAVNSRIIPVIGSHKLKDLKPLHGQRFVKSLID 123

Query: 129 ---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
              +P         ++   + AV+ E +  NP   VE P+ +      W+ E+ + F ++
Sbjct: 124 EELSPKYIEYIFIVLKGALEDAVKWELLYKNPFEHVEIPRPRKVVNNTWSIEETKTFLAY 183

Query: 186 WSEGSQPRLA-FEFLLYSGLRCSDSCRAGVQHL---------------QNNIFSIKTQKT 229
               +      F   L +G+R  +      +++                   F     KT
Sbjct: 184 AKFDNPIYYHLFSLALNTGMRRGELLGLKWKNVDLVEGKISVTETLIYDELGFRFTEPKT 243

Query: 230 -GTIITVELPDGFMKLLAMTPI--------------GKETFFINNDKQKMNATQFSIWFK 274
            G+   + +     K L                     +  F   D + +     +  F+
Sbjct: 244 SGSKRLISIDQSLCKELKSYKAKQNEFKLAIGKAYEDNDLVFSREDGRPIYPRTLTTVFE 303

Query: 275 AKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
                A V K   H +R   AT+    G     +    G  ++    +TY+ 
Sbjct: 304 RFIKTAQVPKIRFHDLRHTHATLLLKLGINPKVVSERLGHNSIKTTLDTYSH 355


>gi|239906167|ref|YP_002952906.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
 gi|239796031|dbj|BAH75020.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
          Length = 348

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 64/347 (18%), Positives = 112/347 (32%), Gaps = 23/347 (6%)

Query: 12  TKERTRHGKIIYYFRKGHGR-------RIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64
             +R+ +G     +R G+GR       + R        F     +      P      + 
Sbjct: 3   VHKRSNNGTYYVAYRDGNGRQHTRSFGKGRDGKREAEKFDEQVKAHKVIEVPLEPAPPTS 62

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGV 123
            KK   L  L   Y  +      ++          ++ II         +I    I S V
Sbjct: 63  GKKIF-LDELSQMYINAKKAEGKSIRRLKELAVILERHIIPAFAQRPVEQIRFDEIISLV 121

Query: 124 ES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
                K +P +  ++L  ++ +F++ V  E +  NP    ++PK +    R  T  D+ +
Sbjct: 122 GKVYAKRSPVTRGRYLAYLKTVFQFGVDNELIEKNPLRRWKKPKERPRDTR-LTVTDLNK 180

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLR--CSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVEL 237
            K+          A E     G+R   S+        +   N   ++   KT T   + +
Sbjct: 181 IKAAAEPHLA--WAIEVAWNLGVRTGPSELLALKWSDVDWENQTVTVYATKTKTRRIIPI 238

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSAT 295
            D F+  L       ++ FI    Q     Q S   +    +AG+      + VR   AT
Sbjct: 239 SDEFLARLREVKEAAQSPFIVEY-QGRPVKQISRAMRTACRRAGITYPVVLYDVRHLFAT 297

Query: 296 ISADAGATAHELMATYGWKTVDQAE--TYTKGADRIRLGIKNSRRIS 340
                G     +    G  ++       Y    D  R  I    R+ 
Sbjct: 298 TLLREGGDLSAVSNLMGHSSIQMTANNYYHLLGDEKRRTIAKLPRLE 344


>gi|82776366|ref|YP_402715.1| putative integrase [Shigella dysenteriae Sd197]
 gi|81240514|gb|ABB61224.1| putative integrase [Shigella dysenteriae Sd197]
          Length = 241

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 78/224 (34%), Gaps = 17/224 (7%)

Query: 112 RKITTKHIRSGVESRKHT-PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170
             I   H+R  ++ R     + A     SM  +F+W   + YV  NPC  V +   K   
Sbjct: 4   DNIKPAHVRLYMDKRGLKSKTQANHEKASMSRVFRWGYERGYVKGNPCQGVSKFSLKPRD 63

Query: 171 IRPWTKEDMQQFKSFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229
              +T E+   + + + E S   + A E       R  D  +     + +    I+  KT
Sbjct: 64  YY-FTDEE---YIAIYQEASPVLQCAMEIAYLCATRIGDIRKLTWDQVMSKGLFIQQGKT 119

Query: 230 GTIITVELPDGFM-KLLAMTPIGKETF-FINNDKQKMNATQFSIWFKAKATKAG------ 281
           G     +  +     L     +G + F   N    + + T F+  ++     A       
Sbjct: 120 GKKQLKQYSERLTFALEQAKSLGGQHFVVCNKYGGQYSYTGFNDIWRKARAAASEKLGYP 179

Query: 282 VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           +  + H + K       D   ++ E     G KT  Q  TY + 
Sbjct: 180 ITGTFHDL-KAKGISDYD--GSSKEKQLFSGHKTEAQVLTYDRK 220


>gi|163939178|ref|YP_001644062.1| integrase family protein [Bacillus weihenstephanensis KBAB4]
 gi|163861375|gb|ABY42434.1| integrase family protein [Bacillus weihenstephanensis KBAB4]
          Length = 370

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 44/288 (15%), Positives = 93/288 (32%), Gaps = 37/288 (12%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH-- 128
              +  +  +  + S+ + +    + Y + +II   G+    K+T+ H+++ V S +   
Sbjct: 68  GEYLESWFNTKKY-SVGIQTAKVLKGYLNSRIIPSLGNIKLAKLTSLHMQNYVNSLRDEG 126

Query: 129 -TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
               +  + +  +R   + A+  E +  N     + PK   E +  W + ++Q F     
Sbjct: 127 LKRGTIEKIIKLIRNSLEHAIDLELITKNVAAKTKLPKADKEELTVWNEHEVQFFLKAAQ 186

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--------------TQKTGTII 233
           + S+  + F   L +G+R  +      + +      +                 KT + +
Sbjct: 187 D-SRYSIVFHMALVTGMREGELLGFRWKDVDLEKGHLTISQTLSHDGKTFLLGGKTKSSL 245

Query: 234 TVELPDG-----FMKLLAMTPIGK----------ETFFINNDKQKMNATQFSIWFKAKAT 278
              L          K  A+    K          +          +N         A   
Sbjct: 246 RKILLPASTVAKLKKHRAVVLKEKLSQGEEYQDNDLVMCTPSGTPINPANVRRSLNALIK 305

Query: 279 KAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
           K  V K   H +R   AT+    G     +    G   +    +TY+ 
Sbjct: 306 KVAVPKIRFHDLRHTHATLLLAKGVNVKVISERLGHSNIKITLDTYSH 353


>gi|261366946|ref|ZP_05979829.1| tyrosine recombinase XerC [Subdoligranulum variabile DSM 15176]
 gi|282571064|gb|EFB76599.1| tyrosine recombinase XerC [Subdoligranulum variabile DSM 15176]
          Length = 359

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 48/304 (15%), Positives = 102/304 (33%), Gaps = 43/304 (14%)

Query: 75  ISEYRKSAHWGSL-AVNSRISF----ESYFDQIIRKSG---------DFDYRKITTKHI- 119
           + EY     +  L +  +   +      +F  ++ + G         + D  KI +K I 
Sbjct: 23  VIEYLHYLDFVKLRSPRTVNGYYLDLRGFFRYMMIQWGRADATAKPEEIDLTKIDSKDIA 82

Query: 120 ---RSGVESRKHTPSSAI-------QFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKT 168
              +  +        SA        + L++++  F +   +   +  +P  +V     K 
Sbjct: 83  GIGKRDIFGYLDYARSANNGSKARARKLSALKGFFGYMCTQVNKITQDPTENVSLGAPKK 142

Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226
              +  T+ +  +  +        R        L  G+R ++     +   +++   I T
Sbjct: 143 TLPKYLTESESLELLNNIQSDFYERDFCIITLFLNCGMRLAELVSIDLGDFRDDTIRI-T 201

Query: 227 QKTGTIITVELPDGFMKLLAMTP---------IGKETFFINND-KQKMNATQFSIWFKAK 276
            K G    V L D   + L               K+  F++    +++ A +        
Sbjct: 202 GKGGKERLVYLNDACKQALERYAKVRGGLVNLSDKDALFVSKRTGKRLTARRVEQIVARC 261

Query: 277 ATKAGVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLG 332
              AG++    S H +R  +AT+    G     L    G + V   + YT     ++R  
Sbjct: 262 LQSAGLSGRGFSPHKLRHTAATLMYQGGVDMLALKEILGHENVSTTQIYTHINQQQLREA 321

Query: 333 IKNS 336
           ++ S
Sbjct: 322 VQAS 325


>gi|297172228|gb|ADI23207.1| integrase [uncultured Gemmatimonadales bacterium HF0770_11C06]
          Length = 296

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 42/253 (16%), Positives = 92/253 (36%), Gaps = 12/253 (4%)

Query: 98  YFDQIIRKSGDFDYRKITTKHIRSG--VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI 155
              + +   GD    ++TT  +     V +++   S+  + L  +R  F  AV  + +  
Sbjct: 1   MLARFVATVGDKRLDQVTTFDVERWKTVRAKQVRKSTVNRELNIVRGCFSRAVEWKRLVK 60

Query: 156 NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS--EGSQPRLAFEFLLYSGLRCSDSCRAG 213
           +P  +V+  + +   +R  + ++++   +          R+  E LL    R S+     
Sbjct: 61  SPMATVKPFRVENTRLRVLSPDEIRVVLTEAPQDLALIARVTLEGLL----RVSEVLSLM 116

Query: 214 VQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFF--INNDKQKMNATQFSI 271
              +Q +   +   K   +  V +     + L          F            +  + 
Sbjct: 117 RSDIQRDYLVVTHTKNNKVRKVPISSDLRRALLARTHQSGYVFGETRYQGHPATQSTVTQ 176

Query: 272 WFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD-RI 329
            F+    + G+ N S H +R   A+     G +   +    GW+++   E YT   D   
Sbjct: 177 AFRRVMARLGIANASHHTLRHTGASSMLADGISVRVVQEIGGWRSLRMLERYTHPTDAET 236

Query: 330 RLGIKNSRRISSV 342
           R  + ++ R++ V
Sbjct: 237 RRAVASASRLTGV 249


>gi|325853917|ref|ZP_08171433.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
 gi|325484254|gb|EGC87184.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
          Length = 427

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 59/318 (18%), Positives = 121/318 (38%), Gaps = 34/318 (10%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWL---ISEYRKSAHWGSLAVNS----RISFES--YFDQ 101
           +T    K  Y+   R  P TL  L   + EY++     +L+  +    + S++S  +F Q
Sbjct: 90  ITAEYLKERYMQQSRPMP-TLAELYQSVCEYKEELQGRTLSKATVRAFKDSYKSFVHFLQ 148

Query: 102 IIRKSGDFDYRKITTKHIRS----GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINP 157
           +  ++ D    ++    +       +    +  SS    L  +  + + A+++ YV  +P
Sbjct: 149 VRDRA-DCMPTEVDKTLLEDYRLFMLRDLGNKESSVGNRLRHLHQVIRKALQERYVREDP 207

Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGV 214
              ++  +  T      T +D+Q+  ++    S     RL F    ++GL  SD  +  +
Sbjct: 208 FELID-IETPTYERNALTADDLQKLLAYRPHRSVDNHCRLIFLLGCFTGLAFSDLKKLRM 266

Query: 215 QHL-----QNNIFSIKTQKTGTIITVELPDGFMKLLAM-TPIGKETFFINNDKQKMNATQ 268
             +          S+   KT     V L     K+LA+ +P  +E  F        + + 
Sbjct: 267 DDVYTFGDGRRYISLCRTKTQNRSIVPLLPIAEKILAIVSPGRREGLFFREF---PSNSN 323

Query: 269 FSIWFKAKATKAGVN----KSAHGVRKFSATIS-ADAGATAHELMATYGWKTVDQAETYT 323
           F+   +    KAG+      ++H  R   AT    + G     +    G + +   E Y 
Sbjct: 324 FNRTIQEICIKAGLPPHTQATSHTARHTFATTICLENGLPIETVSKMLGHRFISTTEIYA 383

Query: 324 KGADRIRLGIKNSRRISS 341
           +   + ++  +    + S
Sbjct: 384 R-VTKSKIAKEMQPLMGS 400


>gi|213691813|ref|YP_002322399.1| phage integrase family protein [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|254799327|sp|B7GQE1|XERC_BIFLI RecName: Full=Tyrosine recombinase xerC
 gi|213523274|gb|ACJ52021.1| phage integrase family protein [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|320457907|dbj|BAJ68528.1| tyrosine recombinase [Bifidobacterium longum subsp. infantis ATCC
           15697]
          Length = 355

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 52/327 (15%), Positives = 95/327 (29%), Gaps = 80/327 (24%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGV--ESRKHTP 130
             Y KS     L+ N+  ++ +       +    G  D  +IT   +RS +  ESR H  
Sbjct: 14  VSYLKSNR--GLSANTLKAYRADLTACLHLFELRGVTDLNEITLDDLRSWMAVESRDHAR 71

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK--SFWSE 188
           SS  +   ++R  F WA      A +P  ++  P   +      T+   +Q    +  + 
Sbjct: 72  SSMARKTVAVRGFFAWAYEHGLTATDPAATLMTPSIPSTLPAVLTESQAEQLLDVAEHAV 131

Query: 189 GS----------------------------------------------------QPRLAF 196
            +                                                    +     
Sbjct: 132 ATNQYKDDGGAAAASGSGKAAGKTADKSADTVNRSEAPARADKRDNARVTAESQRNAAIL 191

Query: 197 EFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKL---------- 244
           E L  +G+R ++     +  +   N    +  +     +          L          
Sbjct: 192 ELLYATGIRVAELVSMDIADIDFSNRTIKVTGKGNKQRVVPFGLPAQRALETWLEQGRPV 251

Query: 245 LAMTPIGK------ETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATIS 297
           LA T             F+     +++           A +AGV + S H +R  +AT  
Sbjct: 252 LARTATDAVKSRAANALFLGARGGRIDQRIARDIVHRAAREAGVPDISPHALRHSAATHI 311

Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324
            D GA   E+    G  ++   + YT 
Sbjct: 312 LDGGADLREVQEMLGHSSLKTTQRYTH 338


>gi|114566841|ref|YP_753995.1| integrase/recombinase [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
 gi|114337776|gb|ABI68624.1| integrase/recombinase [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
          Length = 306

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 43/282 (15%), Positives = 90/282 (31%), Gaps = 31/282 (10%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGV---- 123
           LK+ I E+++   +  ++  +  ++     +      +    +   IT+  I+S +    
Sbjct: 3   LKFAIKEFQEDREFRQISKATLTNYMGCLKEFHTYCLEKEIIEVTDITSNTIKSYLIYCQ 62

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYV--AINPCLSVERPKRKTEGIRPWTKEDMQQ 181
           + R + P++    L S+++ F +    E      NP   V   K   + I  ++ + + +
Sbjct: 63  KERGNNPTTINSKLRSIKIFFNYLQEIEIFNEKNNPIHKVNYIKANVK-IEVFSDKQINE 121

Query: 182 FKSFWSE---------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGT 231
             S++             +       LL +G+R  + C      +      I    K  T
Sbjct: 122 MLSYYRRIKTRDKSLYAYRDSTIIITLLGTGMRLGELCNLKWSDVDFENQHIILFGKLQT 181

Query: 232 IITVELPDGFM------KLLAMTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGVN 283
             ++ + D         KL      GK     F++   + ++       FK         
Sbjct: 182 QTSIPMADKLKSELQEYKLFCQKQFGKLPMFVFVDRTGKPLSPNAVKNMFKRLKQIMNFP 241

Query: 284 ---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
                A+  R   A      G     L       +    E Y
Sbjct: 242 NVRCCAYDFRHTFAHRFLMNGGDVFTLQKLLRHSSPAMTERY 283


>gi|315181198|gb|ADT88112.1| phage integrase family protein [Vibrio furnissii NCTC 11218]
          Length = 395

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 42/250 (16%), Positives = 87/250 (34%), Gaps = 15/250 (6%)

Query: 101 QIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158
               K G      I  + I+  ++       P++  +  + +  +F+ A+   +V  NP 
Sbjct: 135 HFYPKWGKKPLTDIGQQDIQKLLDGLLEGRKPATVNRLRSLVLRMFRLAMEWGFVDKNPG 194

Query: 159 LSVERPKRKTEGIRPWTKEDMQQFKSFWSE--GSQPRLAFEFLLYSGLRCSDSCRAGVQH 216
             + + K      R  ++ ++ +F    +E        A +F L +G+R  +   +  + 
Sbjct: 195 QYIRKLKENNVRQRFLSRAEVSRFIKACNEEPNRTQSNALKFALLTGMRIGEITSSKWEC 254

Query: 217 L----QNNI-FSIKTQKTGTIITVELPDGFMKLL---AMTPIGKETFFINNDKQKMNATQ 268
           L      N    +   K+G   TV L     +++         K  +    D        
Sbjct: 255 LTVDDDGNWSLFLPHTKSGLSRTVLLNQLAKEVIHDQRRFQQPKNPYIFAGDAPGRPIAH 314

Query: 269 FSIWFKAKATKAGV--NKSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKG 325
               F      AG+  N   H +R   A+I  ++G AT +++    G ++   +  Y   
Sbjct: 315 PKKAFARIKKAAGITDNFRIHDLRHSFASILINSGNATLYDVQHLLGHQSPQTSTRYAHL 374

Query: 326 ADRIRLGIKN 335
           A      +  
Sbjct: 375 ASSRLREVSA 384


>gi|298245910|ref|ZP_06969716.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
 gi|297553391|gb|EFH87256.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
          Length = 328

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 47/277 (16%), Positives = 86/277 (31%), Gaps = 41/277 (14%)

Query: 86  SLAVNSRISFESYFDQII----RKSGDFDYRKITTKHIRSGVESRKHTPS---------- 131
            L  N+  S++     ++       G  +  K+T  H+R  V     TPS          
Sbjct: 17  RLGENTHGSYQRALRHLVNLLNSVYGIDELEKVTILHLRDCVRHMIDTPSEVVRERSYGK 76

Query: 132 -------SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
                  S   ++   +V F W  ++E +  NP   ++ PK +   ++ +T E + +   
Sbjct: 77  KSNLADSSVKTYVNIWKVFFNWCYQEELIDSNPSARLKAPKLEKRVLKTFTSEHIYRMLD 136

Query: 185 FW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
                   G +  +    LL +G+R  +     ++ + +    ++  K      V +   
Sbjct: 137 SLNLSTDIGFRDYVILLLLLDTGIRLDEIGTLLLEDVHDTYIKVR-GKGRKEREVGIHPD 195

Query: 241 F--------MKLLAMTPIGKETFFINNDKQKMNA-------TQFSIWFKAKATKAGVNKS 285
                     K        +   FI+  KQ                  K       V  S
Sbjct: 196 VSKQLWKYVHKHRHPGNPDEPKIFIDCSKQGRGKAISRAGVKGMLARLKVALDLKDVRLS 255

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           AH  R   A +    G    +L    G   V   + Y
Sbjct: 256 AHTFRHTFAKMYLAQGGDIFKLSREMGHTNVRITQKY 292


>gi|296170210|ref|ZP_06851803.1| integrase [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295895086|gb|EFG74804.1| integrase [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 387

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 51/301 (16%), Positives = 98/301 (32%), Gaps = 32/301 (10%)

Query: 55  TPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRK 113
           TP  E     + +  TL+   + +  +     LA  +R ++  + D  I+   GD    +
Sbjct: 73  TPPAERAARRQAEKLTLRTYANTWLDNK--TKLARRTRDNYRGHLDNHILPALGDLGLAE 130

Query: 114 ITTKHIRSGVESRKHTPSSAI-QFLTSMRVLFKWAVRQEYVAINPC--LSVERPKRKTEG 170
           IT +H+R+          +   Q    +  +F  AV  + +  NPC      + K     
Sbjct: 131 ITPEHVRTWFAGLGTEHDTRNAQAYAVLNGVFNTAVADDLIDRNPCRIKGAAQVKHAKRS 190

Query: 171 IRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK-- 228
           +       + +      +    RLA     + GLR  +        +  +  +++ ++  
Sbjct: 191 VVLLDAAQLTELAVKMPD--DARLAVLLAGWCGLRKGEVFALRRCDIAADGSTVRIERAV 248

Query: 229 --------------TGTIITVELPD-----GFMKLLAMTPIGKETFFINND--KQKMNAT 267
                           +   V +P          L   T  G E                
Sbjct: 249 TYREGKFEVGPTKTRESRRVVSVPPHVRPAVLDHLARHTAEGDEALVFTEPSTGSFAGEK 308

Query: 268 QFSIWFKAKATKAG-VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           +F   ++A     G      H +R  +  ++A  GAT  ELM   G  + + +  Y   A
Sbjct: 309 RFRTAWEAAREAIGQPELHFHDLRHAAGVMAAQTGATLRELMDRLGHTSPNMSMRYQHTA 368

Query: 327 D 327
           +
Sbjct: 369 E 369


>gi|258511054|ref|YP_003184488.1| integrase family protein [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257477780|gb|ACV58099.1| integrase family protein [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 391

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 54/337 (16%), Positives = 114/337 (33%), Gaps = 37/337 (10%)

Query: 45  PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QII 103
            A  SA+       E       K  TL    S +       SL   +R ++       I+
Sbjct: 46  RAAKSAMMEHLRSLEDTPVVHAKSFTLHEWASRWFADKS-SSLRPWTRRTYHHVLQAYIL 104

Query: 104 RKSGDFDYRKITTKHIRSGVESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV 161
            + G     KI  +HI++      +   P +  +    ++     AV+  Y+  +P L+V
Sbjct: 105 PELGKMPISKIEARHIQALYRKLSNRLKPVTVHRIHRVLKTCLLAAVKAGYLDKSPFLNV 164

Query: 162 ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQNN 220
           E P+ KT      +  D  +  ++  E      +A    +++G+R  +      + +  +
Sbjct: 165 EPPEHKTPPKPVLSVNDAFRLLAWLREHRPTSYMAAFLAIHTGMRMGEIAGLQWRDIDLD 224

Query: 221 IFSIKTQKT-----------------GTIITVELPDGFMKLLAMTPIGK----------E 253
              I+ ++T                 G+   + +    +  L      +          E
Sbjct: 225 TGVIQLERTRYRPKGGQDFLGPPKTFGSRRRIVVTREVVDELRRWKQSQQEIERESWTPE 284

Query: 254 TFFINNDKQ-KMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATY 311
           +F +        +   F+   +    + G+   S HG+R   AT   ++G     +    
Sbjct: 285 SFVVRLPNSAPPSPASFNNAIQNARKELGLPPVSFHGLRHTHATWLLESGVDLKIVSERL 344

Query: 312 GWKTVD-QAETYTKGADRIRLGIKNSRRISSVVDSDD 347
           G  ++   A+ Y    D   L  +   ++  ++ S  
Sbjct: 345 GHSSITITADIYAHVTD--ALQREAIEKLQRMMRSRR 379


>gi|138894424|ref|YP_001124877.1| DNA integration/recombination/invertion protein [Geobacillus
           thermodenitrificans NG80-2]
 gi|134265937|gb|ABO66132.1| DNA integration/recombination/invertion protein [Geobacillus
           thermodenitrificans NG80-2]
          Length = 387

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 50/352 (14%), Positives = 110/352 (31%), Gaps = 52/352 (14%)

Query: 29  HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLA 88
           +G+RI+                L     + E     +    +L   I  +R +     L+
Sbjct: 24  NGKRIKRTKTVHVKTKKEAEKELAKFIAEIEAGEYIKPAKMSLSDFIQLWRDNYAEKQLS 83

Query: 89  VNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH------------TPSSAIQ 135
             +  ++ +Y + +II + G      I   H+   + + K             + ++   
Sbjct: 84  PKTFETYNNYINTRIIPQLGHLQLADIKPIHLIRFLNNLKKDETRLDGKKGSLSEATINY 143

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-SEGSQPRL 194
           +   ++ +F  AV  +++ +NP   + + K        + + + +        E  + RL
Sbjct: 144 YRRILKNIFNRAVEWKFLQVNPAEKLPKEKEDIGKGDVYDENETRLLLKCLEKEDLKWRL 203

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-------------------KTQKTGTIITV 235
            F   L  GLR  +      + +     ++                   K++K+   I +
Sbjct: 204 YFTLALTCGLRKGELLALQWEDIDLESGTLYVKHSLSYTKEKGFFLKEPKSKKSKREIAI 263

Query: 236 E--LPDGFMKLLAMTPIGKETF------------FINNDKQKMNATQFSIWFKAKATKAG 281
              +     K   +    KE              F   + +  + +     ++    +  
Sbjct: 264 PSFVLPLLKKYKNVRLREKEKLQDEWEGGNYNFVFATWNGKPHHHSYPRTKWERFLKRNN 323

Query: 282 VNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA----ETYTKGADR 328
           +     H +R  SATI  + G     +    G  +           TK ADR
Sbjct: 324 LRYIRPHDLRHTSATIMLNNGVNYKTVSERLGHSSTRITFDFYVHRTKEADR 375


>gi|304440179|ref|ZP_07400069.1| tyrosine recombinase XerC [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304371228|gb|EFM24844.1| tyrosine recombinase XerC [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 321

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 40/276 (14%), Positives = 104/276 (37%), Gaps = 30/276 (10%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG----VESRKHTPSSAIQFLTSM 140
             L  +++   + Y +++         + +  + I +     V ++K+  ++  +  +++
Sbjct: 43  RKLNFDTKELDDRYLEKMSLDL----IKTVNKQDIYAYNSYLVHTKKNKMNAVSRKNSAI 98

Query: 141 RVLFKWAV-RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG---------- 189
           R  F +   +   + ++P   ++ PK +       + ++ ++F     +           
Sbjct: 99  RTFFNYLTSKINVLEVDPSSDLDMPKVRRTIPTALSLDEAKRFLKTIEDFNYNGKNNDFL 158

Query: 190 -SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG----FMKL 244
            S+      F L  G+R S+ C   +  L+++       K     ++ L           
Sbjct: 159 KSRDFCIATFFLNCGMRLSELCGINMFDLEDDNTIKILGKGNKERSIYLNKACIHALDNY 218

Query: 245 LAMTP-IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADA 300
           L   P +  +  F++ +K ++      +        +G++    S H +R  +AT+    
Sbjct: 219 LEFRPEVESKALFLSRNKARITPRAVQMMIDKYIVMSGLDPDKYSVHKLRHTAATLMYQY 278

Query: 301 G-ATAHELMATYGWKTVDQAETYTKGAD-RIRLGIK 334
           G      L    G ++V   E YT  +D +++  I+
Sbjct: 279 GDVDIRSLQKVLGHESVQTTEIYTHVSDEQVKRAIE 314


>gi|241662627|ref|YP_002980987.1| integrase family protein [Ralstonia pickettii 12D]
 gi|240864654|gb|ACS62315.1| integrase family protein [Ralstonia pickettii 12D]
          Length = 412

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 47/293 (16%), Positives = 90/293 (30%), Gaps = 19/293 (6%)

Query: 50  ALTGSTPK---REYINSPRKKPTTLKWLISEYRK--SAHWGSLAVNSRISFESYFDQIIR 104
           AL G          +   R+   T   L  +Y K  S      +   +  F+ Y      
Sbjct: 85  ALNGEIATGTNPAELKRIRRAEMTFGDLFDQYYKNHSLPNKKTSDEDKQKFDQYLSSNRD 144

Query: 105 --KSGDFDYRKITTKHIRSGVESRK-HTPSSAIQFLTSMRVLFKWAVRQE-YVAINPCLS 160
                      I+   I             +A + L  +  +F  A+    +  +NPC  
Sbjct: 145 GVNLASRQLSAISKADIAQLFGKISMEHKITANRVLALVSSIFGKAIEWGIWNQMNPCQG 204

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSF--WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218
           + R +  +   R    +++ +F         +  R      L +G R S+      + + 
Sbjct: 205 IRRNRENSR-DRFLHPDELPKFFEHVLAYPNATLRDYMLVSLLTGARRSNVLAMRWEDVN 263

Query: 219 NNIFSIK--TQKTGTIITVELPDGFMKLLAMTP----IGKETFFINNDKQKMNATQFSIW 272
                 +    K GT  +V L    + LL             F      +  +  +    
Sbjct: 264 LERAEWRIHETKNGTPQSVPLVPDAVALLRNRQEMPECEDSPFVFPGTGKSGHLVEPKKA 323

Query: 273 FKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +K   T+AG+ +   H +R+   +  A  GA    +  +   K+      Y +
Sbjct: 324 WKIVLTQAGIKDLRLHDLRRTMGSWQAGTGANLSVIGRSLNHKSTATTAIYAR 376


>gi|121594962|ref|YP_986858.1| phage integrase family protein [Acidovorax sp. JS42]
 gi|330824224|ref|YP_004387527.1| integrase family protein [Alicycliphilus denitrificans K601]
 gi|120607042|gb|ABM42782.1| phage integrase family protein [Acidovorax sp. JS42]
 gi|321116506|dbj|BAJ72205.1| integrase [Acidovorax sp. KKS102]
 gi|329309596|gb|AEB84011.1| integrase family protein [Alicycliphilus denitrificans K601]
          Length = 400

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 66/322 (20%), Positives = 113/322 (35%), Gaps = 24/322 (7%)

Query: 48  MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKS 106
             A            +  +K  T+K L   +           +++ S++   D  +I   
Sbjct: 77  WLAEVRRGGDPGLDKAEARKAPTVKELCGRFMDDHSKPHNKPSTQASYQYQIDNFVIPAF 136

Query: 107 GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI--NPCLSVERP 164
           G     ++T   I + ++  + +P+ A + L+ +R +F  A    Y     NPC  V  P
Sbjct: 137 GSKKVHEVTRHDITALMKRMERSPTQANRVLSLVRKMFNLAELWGYRPDGSNPCRHV--P 194

Query: 165 KRKTEGIRPWTKED--------MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216
           K   +G      ++        + + ++   E     LA         R S+        
Sbjct: 195 KYPEKGSTRLITDEQMVSLFAYLDKAEAEGLEHPIYLLAVRLQFEFAARMSEILLLQWDW 254

Query: 217 LQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFF----INNDKQKMNATQFS 270
           L   N        KTG +    L +   +LL   P    + +    I +  + +    + 
Sbjct: 255 LDLPNGRVVWPDSKTGDMSK-PLSEEARRLLTNAPRYGNSPYVCPAILDHDKPLGPHSYY 313

Query: 271 IWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD-- 327
             ++    +AGV K   HG+R  SAT  A++G      MA    KTV     Y    D  
Sbjct: 314 QAWRRILDRAGVPKVGTHGIRHRSATDIANSGIPVKVGMALTAHKTVAMFMRYVHTEDDP 373

Query: 328 -RIRLGIKNSRRISSVVDSDDP 348
            R    +  SRR S V    +P
Sbjct: 374 VRKAAELVASRRKSVVGTRQEP 395


>gi|269964616|ref|ZP_06178854.1| hypothetical protein VMC_02840 [Vibrio alginolyticus 40B]
 gi|269830515|gb|EEZ84736.1| hypothetical protein VMC_02840 [Vibrio alginolyticus 40B]
          Length = 402

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 43/250 (17%), Positives = 87/250 (34%), Gaps = 15/250 (6%)

Query: 101 QIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158
               K G      I  + I+  ++       P++  +  + +  +F+ A+   YV  NP 
Sbjct: 141 HFYPKWGKKPLTDIGQQDIQKLLDGLLEGRKPATVNRLRSLVLRMFRLAMEWGYVDSNPG 200

Query: 159 LSVERPKRKTEGIRPWTKEDMQQFKSFWSE--GSQPRLAFEFLLYSGLRCSDSCRAGVQH 216
             + + K      R  ++ ++  F    +E        A +F L +G+R  +   +  + 
Sbjct: 201 QYIRKLKENNVRQRFLSRAEVSSFIKACNEEPNRTQSNALKFALLTGMRIGEITGSKWEC 260

Query: 217 L----QNNI-FSIKTQKTGTIITVELPDGFMKLL---AMTPIGKETFFINNDKQKMNATQ 268
           L      N    +   K+G   TV L +   +++         K  +    D        
Sbjct: 261 LTVDDDGNWSLFLPHTKSGLSRTVLLNNLAKEVIHDQRRFQQPKNPYIFAGDAPGRPIAH 320

Query: 269 FSIWFKAKATKAGV--NKSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKG 325
               F      AG+  N   H +R   A+I  ++G AT +++    G ++   +  Y   
Sbjct: 321 PKKAFARIKKAAGITDNFRIHDLRHSFASILINSGNATLYDVQHLLGHQSAQTSTRYAHL 380

Query: 326 ADRIRLGIKN 335
           A      +  
Sbjct: 381 ASSRLREVSA 390


>gi|118464288|ref|YP_880725.1| integrase [Mycobacterium avium 104]
 gi|118165575|gb|ABK66472.1| integrase [Mycobacterium avium 104]
          Length = 368

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 51/320 (15%), Positives = 104/320 (32%), Gaps = 34/320 (10%)

Query: 55  TPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRK 113
           TP  E     + +  TL+     +  +     LA  +R +++ + D  ++   GD     
Sbjct: 54  TPPAERAARRQAEKLTLRTYAKTWLDNK--TKLARRTRDNYQGHLDNHVLPALGDLGLAD 111

Query: 114 ITTKHIRSGVESRKHTPSSAI-QFLTSMRVLFKWAVRQEYVAINPCL--SVERPKRKTEG 170
           IT +H+R+      +   +   Q    +  +F  AV  + +  NPC      + K     
Sbjct: 112 ITPEHVRTWFAGLGNEHETRNAQAYAVLNGVFNTAVADDLIDRNPCRIRGAAQVKHARRS 171

Query: 171 IRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL------------- 217
           +       +        +    RL      + GLR  +        +             
Sbjct: 172 VVLLDATQLTALAEKMPD--DARLGVLLAGWCGLRKGEVFALRRGDVAADGSSVRIERSV 229

Query: 218 --QNNIFSIKTQKTG-TIITVELPDGFMKLLA-------MTPIGKETFFINNDKQKMNAT 267
             +   F +   KT  +   V +P      +                F   +        
Sbjct: 230 TYREGRFEVGPTKTRESRRVVSVPPHVRPAVLEHLQRHVADGDDALVFVEPSTGSFAGEK 289

Query: 268 QF-SIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           +F + W  A+A     +   H +R  +  ++A  GAT  ELM   G  + + +  Y   A
Sbjct: 290 RFRTAWESARAAIGQPDMHFHDLRHAAGVMAAQTGATVRELMDRLGHTSPNMSMRYQHTA 349

Query: 327 DRIRLGIKNSRRISSVVDSD 346
           +        + ++S++  ++
Sbjct: 350 EGR--AAALADKLSALASTN 367


>gi|78356628|ref|YP_388077.1| site-specific recombinase XerD-like [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|78219033|gb|ABB38382.1| Site-specific recombinase XerD-like protein [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 332

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 45/287 (15%), Positives = 91/287 (31%), Gaps = 38/287 (13%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITT--------KHIRSGVESRKHTPSSAIQF 136
              +  +   +     Q        D    T             + +  +    SS  + 
Sbjct: 30  KGYSSATVRGYACDLAQFEDFLQRRDMSLDTPADIVPRTIHDFLADLHRQHVGKSSMGRK 89

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG------- 189
           L+++R  F++  R+ ++   P   +  P++     R    +         ++        
Sbjct: 90  LSALRGFFRYLARKGFIRSVPTEGITNPRQAQRSPRALNVDQAYAVLDTRTQAASRAQVH 149

Query: 190 ----------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELP 238
                     ++     E L  SGLR S++    + H   +   IK T K      V L 
Sbjct: 150 VRQAHKREQLTRDLALAELLYGSGLRISEALALDLCHTDPSSGLIKVTGKGSKERIVPLS 209

Query: 239 D----------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286
           D             + L ++   ++  F+     ++N  Q     +     AG+ +  S 
Sbjct: 210 DTSRQALQLWLDVRETLDVSGGAEQAVFLGARGGRLNRRQALRIIEDLCRAAGLPQAVSP 269

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           H +R   AT   +AGA    +    G + +   + YT    R  + +
Sbjct: 270 HALRHSFATHLLEAGADMRSVQELLGHERLTTTQRYTHLTLRKIVEV 316


>gi|319409436|emb|CBI83085.1| integrase/recombinase XerD [Bartonella schoenbuchensis R1]
          Length = 312

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 40/286 (13%), Positives = 91/286 (31%), Gaps = 35/286 (12%)

Query: 73  WLISEYRK--SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVES 125
            +I  + +  SA  G+ A  +  ++++       +         + +      + S + +
Sbjct: 5   AVIDRFLEMMSAERGACAH-TLSAYQNDLQWAHDQLCSRSVSLFSAQREDLINLLSLMHT 63

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
                +S  + L+++R  +++   +     +P   ++ P+++    +   ++ + +    
Sbjct: 64  AGFAATSQARRLSTLRQFYQFLYAEGLRTDDPSHDIDTPRQRRLLPKTMNEDTVTKLLDR 123

Query: 186 --------------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
                              + ++  E L  +GLR S+     VQ ++     I  +  G 
Sbjct: 124 AQLEVDQTDYGSKNHMRALRLQVLIEMLYATGLRISELVSLPVQAVRGKEQFIVVRGKGE 183

Query: 232 IITVELP---------DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW-FKAKATKAG 281
              + L             +             F         A QF     K  A +AG
Sbjct: 184 KERMVLLSDKACQVISQWLVLRDQGKDAASFYLFPARSSTGYVARQFVARGLKELAERAG 243

Query: 282 VNKS---AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           V  S    H +R   A+     GA    +    G   +   + YT 
Sbjct: 244 VKSSNFSPHVLRHAFASHLLQNGADLRVVQHLLGHCDISTTQIYTH 289


>gi|237811004|ref|YP_002895455.1| phage integrase family protein [Burkholderia pseudomallei MSHR346]
 gi|237503562|gb|ACQ95880.1| phage integrase family protein [Burkholderia pseudomallei MSHR346]
          Length = 349

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 44/282 (15%), Positives = 98/282 (34%), Gaps = 19/282 (6%)

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
           I     + TT+   +  Y +     +   +++    +   ++    G +    +T   + 
Sbjct: 51  IQRAPSEKTTVADALDRYEREIV-PTKKASTQRREGARIRELKANFGKYSLAAVTPDLVS 109

Query: 121 SGVESRKHTPSSAIQF---LTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPWT 175
              + R     +       L  +  LF  A+++ ++    NP  ++ +P       R  +
Sbjct: 110 RYRDDRLARGKANNTVRLELALLGHLFNVAIKEWHIGLIFNPVANIRKPSPGEGRNRRLS 169

Query: 176 KEDMQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGT 231
           + +  +  +   + S P L       + +G+R S+        +     +  +   K   
Sbjct: 170 ESEQAKLLATVDQHSNPMLGWIVRLAIETGMRQSEILGLRRGQVDLERRVVRLTDTKNNA 229

Query: 232 IITVELPDGFMKLLAMT------PIGKETFFINNDKQ--KMNATQFSIWFKAKATKAG-V 282
             TV L      +L         PI  +  F     +  K  A QF+  +     + G +
Sbjct: 230 ARTVPLTKLAALVLQNALGNPVRPIDTDLVFFGEPGRDGKRRAYQFTKVWNGLKKRTGLI 289

Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +   H +R  + +   +AG T  E+ +  G K++     YT 
Sbjct: 290 DFRFHDLRHEAVSRLVEAGLTDQEVASISGHKSMQMLRRYTH 331


>gi|262373155|ref|ZP_06066434.1| tyrosine recombinase XerC [Acinetobacter junii SH205]
 gi|262313180|gb|EEY94265.1| tyrosine recombinase XerC [Acinetobacter junii SH205]
          Length = 311

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 48/286 (16%), Positives = 97/286 (33%), Gaps = 28/286 (9%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSGVESR----K 127
           L+S + K     + + ++  +++                   I    +R  + +R    +
Sbjct: 14  LLSMWLKERIIQNQSEHTIEAYQRDLTDFFNFCDSKSLALYDIEASDLREYLANRVEKDQ 73

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            + SS  + LTS+R   KWA + +Y+  NP    +  ++          E + Q      
Sbjct: 74  LSSSSLQRHLTSIRQFMKWAEQGQYLQQNPSEDFKLKRQPRPLPGMVDIETVHQILDQAP 133

Query: 188 EG--------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---- 235
                      + +   E L  SGLR ++     ++ +  N   ++    G    +    
Sbjct: 134 PDKPIEQQLWLRDKAILELLYSSGLRLAELQGLMIKDIDFNRQLLRITGKGNKTRIVPFG 193

Query: 236 -ELPDGFMKLLAMTPI------GKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286
            +  D  ++ L +  I           FI+    ++   Q     K +A +AGV  +   
Sbjct: 194 QKAKDSLIEWLKIYRIWQGEFNLDSAVFISQRGNRLTPRQIENRVKLQAQRAGVNVDLHP 253

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           H +R   A+    A      +    G   +   + YT   D  +L 
Sbjct: 254 HLLRHCFASHMLSASGDLRSVQEMLGHSNLSTTQIYTH-VDFDQLA 298


>gi|229137159|ref|ZP_04265778.1| Prophage LambdaBa04, site-specific recombinase, phage integrase
           [Bacillus cereus BDRD-ST26]
 gi|228646331|gb|EEL02546.1| Prophage LambdaBa04, site-specific recombinase, phage integrase
           [Bacillus cereus BDRD-ST26]
          Length = 378

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 46/292 (15%), Positives = 95/292 (32%), Gaps = 37/292 (12%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH 128
           TL   + E+ ++     +   + I++    + +II   G    + +   H +  V+S   
Sbjct: 64  TLSEYLQEWLENTAKQRVRDTTFINYRRAVNSRIIPVIGSHKLKDLKPLHGQRFVKSLID 123

Query: 129 ---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
              +P         ++   + AV+ E +  NP   VE P+ +      W+ E+ + F ++
Sbjct: 124 EELSPKYIEYIFIVLKGALEDAVKWELLYKNPFEHVEIPRPRKVVNNTWSIEETKTFLTY 183

Query: 186 WSEGSQPRLA-FEFLLYSGLRCSDSCRAGVQHL---------------QNNIFSIKTQKT 229
               +      F   L +G+R  +      +++                   F     KT
Sbjct: 184 AKFDNPIYYHLFLLALNTGMRRGELLGLKWKNVDLVEGKVSVTETLIYDELGFRFTEPKT 243

Query: 230 -GTIITVELPDGFMKLLAMTPI--------------GKETFFINNDKQKMNATQFSIWFK 274
            G+   + +     K L                     +  F   D + +     +  F+
Sbjct: 244 SGSKRLISIDQSLCKELKSYKAKQNEFKLAIGKAYEDNDLVFSREDGRPIYPRTLTTVFE 303

Query: 275 AKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
                A V K   H +R   AT+    G     +    G  ++    +TY+ 
Sbjct: 304 RFIKTAQVPKIRFHDLRHTHATLLLKLGINPKIVSERLGHNSIKTTLDTYSH 355


>gi|29376760|ref|NP_815914.1| phage integrase family site specific recombinase [Enterococcus
           faecalis V583]
 gi|227517099|ref|ZP_03947148.1| phage integrase family site specific recombinase [Enterococcus
           faecalis TX0104]
 gi|227555253|ref|ZP_03985300.1| phage integrase family site specific recombinase [Enterococcus
           faecalis HH22]
 gi|255975282|ref|ZP_05425868.1| integrase [Enterococcus faecalis T2]
 gi|307285277|ref|ZP_07565421.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0860]
 gi|29344225|gb|AAO81984.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis V583]
 gi|227075470|gb|EEI13433.1| phage integrase family site specific recombinase [Enterococcus
           faecalis TX0104]
 gi|227175635|gb|EEI56607.1| phage integrase family site specific recombinase [Enterococcus
           faecalis HH22]
 gi|255968154|gb|EET98776.1| integrase [Enterococcus faecalis T2]
 gi|306502854|gb|EFM72116.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0860]
 gi|315573394|gb|EFU85585.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0309B]
 gi|315581045|gb|EFU93236.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0309A]
          Length = 369

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 53/358 (14%), Positives = 121/358 (33%), Gaps = 38/358 (10%)

Query: 22  IYYFRKGHGRRIRLPYPHESTFIPAYMSALT----GSTPKREYINSPRKKPTTLKWLISE 77
            +  R   GR+I     +   +   Y             ++    S  +   TL   I +
Sbjct: 15  RWEGRFPRGRKIDGKLKYGYIYGSTYQEVRQKLYVAKANQQTIYQSRGQGAFTLNEWIEQ 74

Query: 78  YRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVE---SRKHTPSSA 133
           +        + +++  S+     + +++  GD    +I    +   VE   ++  + S+ 
Sbjct: 75  WLVIVK-KEVKLSTFASYSYKLSNYVLKTMGDSALNEIDDLRLNKLVEDLIAQGLSKSTI 133

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-WSEGSQP 192
                 +      AV+ +++  NPC ++  PK K   IR    E+ ++ ++  +    Q 
Sbjct: 134 CVIFGILSRALNHAVKAKHLKSNPCSTISLPKPKRRHIRALDIEEQKKLENVAYKNPQQQ 193

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIK--------------------TQKT- 229
            L+    L++GLR  +      + +  + +   +K                      KT 
Sbjct: 194 GLSVIVALHTGLRIGELAALRWEDINFKKDTIHVKHTFQRVSVSSFGESTQLYYDCTKTI 253

Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ-FSIWFKAKATKAGVNK-SAH 287
            +   + + +     L       +  F+ +   K    +  + +F     K  ++K   H
Sbjct: 254 NSERIIPMSNTVKNALKCQKEHSQGKFVFSRNNKPCEPRLLTYYFHKLRDKVQLDKVHFH 313

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVVD 344
            +R   AT   ++ +    + A  G  +     + Y       R  IK  +R+   + 
Sbjct: 314 QLRHTFATRCLESTSDIVSVSALLGHSSTQMTLDIYADSLLEQR--IKAIKRMERTIA 369


>gi|83943902|ref|ZP_00956359.1| tyrosine recombinase [Sulfitobacter sp. EE-36]
 gi|83845149|gb|EAP83029.1| tyrosine recombinase [Sulfitobacter sp. EE-36]
          Length = 315

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 50/276 (18%), Positives = 84/276 (30%), Gaps = 28/276 (10%)

Query: 85  GSLAVNSRISFESYFDQII--------RKSGDFDYRKITTKHIRSGVESRKHT---PSSA 133
              A N+  +++      +           G     +IT   +R+ +   +     P S 
Sbjct: 28  KGAAENTITAYQGDLVDFLAFMTLHKGDSQGLGALSQITISDMRAWMAQTRSGDVGPRSM 87

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS-------FW 186
            + L++++  ++W   +E       LS   PK   +  RP   +  Q             
Sbjct: 88  ARKLSAVKAFYRWLAEREGFEPTAVLSTRSPKFPKKLPRPLAIDAAQAMIDSVEMQSRHA 147

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM---- 242
              ++       L   GLR S++                  K G    V +         
Sbjct: 148 WVAARDVAVLTLLWGCGLRISEALGLKGADAPLPEVLRIIGKGGKERVVPVLPAARDAVD 207

Query: 243 KLLAMTPIGKE---TFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATIS 297
             L + P GKE     F       + A   S        + G+  SA  H +R   AT  
Sbjct: 208 AYLRVCPFGKERDAPLFRAMRGGPLAARAISQVMADARMQLGLPASATPHALRHSFATHL 267

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
            DAG     +    G  ++   + YT   D  RL  
Sbjct: 268 LDAGGDLRAIQELLGHASLSTTQAYT-AVDTARLMD 302


>gi|218667058|ref|YP_002425468.1| site-specific recombinase, phage integrase family
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|218519271|gb|ACK79857.1| site-specific recombinase, phage integrase family
           [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 349

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 53/317 (16%), Positives = 101/317 (31%), Gaps = 20/317 (6%)

Query: 17  RHGKIIY-YFRKGHGRRIR-LPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           + GK  +  F   +G+RIR      E         +L     ++  +    +   T    
Sbjct: 4   KRGKTWWISFTTPNGQRIRRSAGTTEKAQAEELHDSLKAQAWRQ--VQLGDRPAYTWDDA 61

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--TPSS 132
              +            S ++ E +   +         R +    I + ++ +K   + S+
Sbjct: 62  GVRWLDEKA----HKASLVTDEIFLAWLQDHFRGVPLRDLNRDRIMTVLQIKKTQTSAST 117

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
           A  ++  +R + + AV   ++   P   +      T+ +R  T E      +      + 
Sbjct: 118 ANHYMALIRSMLRAAVEWGWLDYPP--LLRPYPTPTQRVRWLTPEQAVLLLNELPPHLRD 175

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGFMKLLAMT 248
             AF     +GLR S+        L              K    ITV L D  + +L   
Sbjct: 176 MAAFSLA--TGLRRSNVTGLEWSQLDLGRKIAWIHADQAKARKPITVPLDDVAISILRAQ 233

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHEL 307
                 +      +++       W K    +AG+ N   H +R   A+    AG   + L
Sbjct: 234 IGNHPIYVFTYCGKRVTQVNTKAW-KKALERAGIENFRWHDLRHTWASWHIQAGTPLNTL 292

Query: 308 MATYGWKTVDQAETYTK 324
               GW + +    Y  
Sbjct: 293 QDLGGWHSSEMVRKYAH 309


>gi|24374071|ref|NP_718114.1| phage integrase family site specific recombinase [Shewanella
           oneidensis MR-1]
 gi|24348549|gb|AAN55558.1|AE015694_7 site-specific recombinase, phage integrase family [Shewanella
           oneidensis MR-1]
          Length = 287

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 43/269 (15%), Positives = 91/269 (33%), Gaps = 25/269 (9%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----SRK 127
             L+ ++         +  +R ++     Q+ +   +     IT + + +        R 
Sbjct: 2   SSLLQQFHDEISLRGYSARTRNAYLYAITQL-QHYANQPLDNITDEQLTAYFRYLNLERH 60

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           H+ ++    L  +   ++  +++++      + +  PKR  +  +  + +D+     +  
Sbjct: 61  HSRATLKLQLNGIHFFYEHVLKRDF-----TIQLSLPKRPHKLPQLLSCQDIAALL-YHC 114

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLL 245
           +  + R         GLR S+     V  +      +K    K      V L    + LL
Sbjct: 115 QNLKQRAMLALCYGCGLRVSELTHIKVADIDGQRQLLKVCQGKGACDRWVILSPTLLILL 174

Query: 246 AMT-----PIGKETFFINNDK---QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSAT 295
                   P+  E  F +        ++ + F       A  A +    S H +R   AT
Sbjct: 175 RQYWQAYHPV--EWLFASTYHDVVYPLHESTFRKALAKAARLASITKPCSPHSLRHAYAT 232

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTK 324
               AG   H+L A  G  ++   E Y  
Sbjct: 233 HQLQAGMPLHQLQAQLGHHSIKSTERYLH 261


>gi|326943857|gb|AEA19747.1| integrase/recombinase [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 314

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 35/295 (11%), Positives = 90/295 (30%), Gaps = 40/295 (13%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFD--------YRKITTKHIRSGVESRKHT------- 129
                N+   +E+   + I+   D +           +  +  +  +     T       
Sbjct: 17  QGKRENTIKQYETTLKEFIQWYEDTNGVVFQGESITPMDLQEWKQFLMEVAKTNSGKQLS 76

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK-----------ED 178
            S+    +  ++  FK+         N    V++PK + +    W             ED
Sbjct: 77  VSTVSTKIGRVKPYFKFLYETNRTQTNLGAMVKQPKIQNKNDAKWLDRISKNRLMRYLED 136

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
           ++  K    +  +       +L +GLR S+  +  +  +++   S++  K G    + + 
Sbjct: 137 VELIKKNPWKNYRNLAIVNIMLQAGLRVSEVSKLKLDDIEDGFISVRDGKGGKARKIPMN 196

Query: 239 DGFMKLLAMTPIGK-----------ETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSA 286
              +  +      +           E  F++     ++       FK      G+   + 
Sbjct: 197 SDVVNSINKWKEHRQIHQAFKENQTEYLFVSQKNGPLSVVGIENIFKTIRKHTGLEELTP 256

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
           H +R          G     +    G   ++  + Y     + +   +   +++S
Sbjct: 257 HVLRHTFGHDLVQKGIPISYVAELMGHTDINTTKIYVTAGQQEK--QEAVEKLAS 309


>gi|228942745|ref|ZP_04105273.1| Integrase/recombinase [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228975855|ref|ZP_04136385.1| Integrase/recombinase [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228982303|ref|ZP_04142579.1| Integrase/recombinase [Bacillus thuringiensis Bt407]
 gi|228777408|gb|EEM25699.1| Integrase/recombinase [Bacillus thuringiensis Bt407]
 gi|228783881|gb|EEM31930.1| Integrase/recombinase [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228816956|gb|EEM63053.1| Integrase/recombinase [Bacillus thuringiensis serovar berliner ATCC
           10792]
          Length = 308

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 35/295 (11%), Positives = 90/295 (30%), Gaps = 40/295 (13%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFD--------YRKITTKHIRSGVESRKHT------- 129
                N+   +E+   + I+   D +           +  +  +  +     T       
Sbjct: 11  QGKRENTIKQYETTLKEFIQWYEDTNGVVFQGESITPMDLQEWKQFLMEVAKTNSGKQLS 70

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK-----------ED 178
            S+    +  ++  FK+         N    V++PK + +    W             ED
Sbjct: 71  VSTVSTKIGRVKPYFKFLYETNRTQTNLGAMVKQPKIQNKNDAKWLDRISKNRLMRYLED 130

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
           ++  K    +  +       +L +GLR S+  +  +  +++   S++  K G    + + 
Sbjct: 131 VELIKKNPWKNYRNLAIVNIMLQAGLRVSEVSKLKLDDIEDGFISVRDGKGGKARKIPMN 190

Query: 239 DGFMKLLAMTPIGK-----------ETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSA 286
              +  +      +           E  F++     ++       FK      G+   + 
Sbjct: 191 SDVVNSINKWKEHRQIHQAFKENQTEYLFVSQKNGPLSVVGIENIFKTIRKHTGLEELTP 250

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
           H +R          G     +    G   ++  + Y     + +   +   +++S
Sbjct: 251 HVLRHTFGHDLVQKGIPISYVAELMGHTDINTTKIYVTAGQQEK--QEAVEKLAS 303


>gi|157502100|ref|YP_001485199.1| integrase/recombinase [Bacillus thuringiensis]
 gi|87133405|gb|ABD24315.1| integrase/recombinase [Bacillus thuringiensis]
          Length = 314

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 35/295 (11%), Positives = 90/295 (30%), Gaps = 40/295 (13%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFD--------YRKITTKHIRSGVESRKHT------- 129
                N+   +E+   + I+   D +           +  +  +  +     T       
Sbjct: 17  QGKRENTIKQYETTLKEFIQWYEDTNGVVFQGESITPMDLQEWKQFLMEVAKTNSGKQLS 76

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK-----------ED 178
            S+    +  ++  FK+         N    V++PK + +    W             ED
Sbjct: 77  VSTVSTKIGRVKPYFKFLYETNRTQTNLGAMVKQPKIQNKNDAKWLDRISKNRLMRYLED 136

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
           ++  K    +  +       +L +GLR S+  +  +  +++   S++  K G    + + 
Sbjct: 137 VELIKKNPWKNYRNLAIVNIMLQAGLRVSEVSKLKLDDIEDGFISVRDGKGGKARKIPMN 196

Query: 239 DGFMKLLAMTPIGK-----------ETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSA 286
              +  +      +           E  F++     ++       FK      G+   + 
Sbjct: 197 SDVVNSINKWKEHRQIHQAFKENQTEYLFVSQKNGPLSVVGIENIFKTIRKHTGLEELTP 256

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
           H +R          G     +    G   ++  + Y     + +   +   +++S
Sbjct: 257 HVLRHTFGHDLVQKGIPISYVAELMGHTDINTTKIYVTAGQQEK--QEAVEKLAS 309


>gi|117923766|ref|YP_864383.1| tyrosine recombinase XerC subunit [Magnetococcus sp. MC-1]
 gi|117607522|gb|ABK42977.1| tyrosine recombinase XerC subunit [Magnetococcus sp. MC-1]
          Length = 335

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 44/284 (15%), Positives = 88/284 (30%), Gaps = 44/284 (15%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFD--------YRKITTKHIRSGV---ESRKHTPSSA 133
             L+V++   +    +       +++          ++   HI + +          ++ 
Sbjct: 17  RRLSVHTEKGYRRDLEAFSAFYAEYEGEPLTPTKLAQLDGDHILAFLGRGHREGLARTTM 76

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-----------------PWTK 176
            + + ++R  F +  R+  V+ NP  +V  PK      R                 P + 
Sbjct: 77  QRRMAALRAWFNYMQREGLVSGNPAAAVSSPKAPKRLPRAPSVEQTLNLLDKSTPRPLSP 136

Query: 177 EDMQQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTI 232
           E      S W+     R     E L  +GLR S++C      +        ++  K G  
Sbjct: 137 EASDFDTSAWAVLRSLRDTALLELLYSAGLRISEACNLDRADVDLRGGELRVRHGKGGKQ 196

Query: 233 ITVELPD--------GFMKLLAMTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGV 282
             V L                   P        F     +++N+ +     +    +  +
Sbjct: 197 RMVPLGRTAVAAIEAWLQARTRAKPQLDPMGPIFTGQLGKRLNSREGQRLLEKWRARLDL 256

Query: 283 NKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            +S   H +R   AT    AGA    +    G  ++   + YT 
Sbjct: 257 PESVTPHALRHAFATHLLQAGADLRAIQEMMGHASLSATQKYTH 300


>gi|313681427|ref|YP_004059165.1| integrase family protein [Sulfuricurvum kujiense DSM 16994]
 gi|313154287|gb|ADR32965.1| integrase family protein [Sulfuricurvum kujiense DSM 16994]
          Length = 282

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 44/269 (16%), Positives = 87/269 (32%), Gaps = 21/269 (7%)

Query: 76  SEYRKSAHW-------GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGVES 125
             YR+   +          +  +  S+    D+++         +   I    +R  + S
Sbjct: 5   ELYRQKEAFLKYLDTIRGYSPLTIRSYNDAIDEMLTFAEMDASSNLLSINLMPLRLKISS 64

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
            K    +A   L+++R   K+   Q           E  K      +P T E +    + 
Sbjct: 65  LKAKSIAAK--LSAIRSFVKYLRSQG--KTVELRGDESIKTPKTLPKPITHEQI--LHAL 118

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
                Q  LA   L   GLR S+     +  +      I   K      + + D    ++
Sbjct: 119 QYAEPQAALAITLLYTMGLRISELTHLRLSDISEGWSRIH-GKGSKERDIPMMDNIRTMV 177

Query: 246 AMTP---IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGA 302
                    +E  F     +K++             K G+  + H +R   AT   + GA
Sbjct: 178 QEYQKINPSREYVFELK-GEKLSENSLRYTIIKAFAKVGLKVTPHQLRHTYATELLNNGA 236

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRL 331
              ++    G  ++   + YTK  + +++
Sbjct: 237 RIADVSELLGHASMATTQIYTKLGNALKM 265


>gi|251772728|gb|EES53290.1| phage integrase family protein [Leptospirillum ferrodiazotrophum]
          Length = 326

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 48/310 (15%), Positives = 104/310 (33%), Gaps = 24/310 (7%)

Query: 26  RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG 85
           RKG   + R           ++ + +     +  +++    + TTL   +  Y +     
Sbjct: 18  RKGFPPQSR--TFSAKAEADSWAAVIESEMARGVFVSRTEAENTTLSEALDRYEREISLL 75

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--TPSSAIQFLTSMRVL 143
                       Y+              I +  + +  ++R    + S+  + +  +  +
Sbjct: 76  KKGAAVETVRIRYWKNY--PLSARPLAGIRSSDLAAWRDARLSEVSSSTVNREMNLISHV 133

Query: 144 FKWAV-RQEYVA-INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS---EGSQPRLAFEF 198
           F   +      + +NP   + RP+      R     ++++          G   R A E 
Sbjct: 134 FTICIKEWGMASLVNPVSQIRRPRNPESRERRLQFGELEKILEHTDSQILGPVVRFALE- 192

Query: 199 LLYSGLRCSDSCRAGVQHLQNN--IFSIKTQKTGTIITVELPDGFMKLLAMTPIG-KETF 255
              +G+R  +       H+     +  I   KTG   TV L    +++L   P     + 
Sbjct: 193 ---TGMRRGEIASMRWDHVDVKKRVLLIPETKTGKSRTVPLTTEALRILNDLPRRLDGSI 249

Query: 256 FINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWK 314
           +   D   M        F+    +AG+ + + H +R  + +   + G    ++ A  G K
Sbjct: 250 WGMTDPHTMTRA-----FERACKRAGIEDLTFHDLRHEATSRFFEKGLNPMQVAAITGHK 304

Query: 315 TVDQAETYTK 324
           T+   + YT 
Sbjct: 305 TLQMLKRYTH 314


>gi|228956754|ref|ZP_04118540.1| Prophage LambdaBa04, site-specific recombinase, phage integrase
           [Bacillus thuringiensis serovar pakistani str. T13001]
 gi|228802942|gb|EEM49774.1| Prophage LambdaBa04, site-specific recombinase, phage integrase
           [Bacillus thuringiensis serovar pakistani str. T13001]
          Length = 374

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 46/292 (15%), Positives = 97/292 (33%), Gaps = 37/292 (12%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH 128
           TL   + E+ ++     +  ++ I++    + +II   G    + +   H +  V+S   
Sbjct: 64  TLSEYLQEWLENTAKQRVRDSTFINYRRAVNSRIIPVVGSHKLKDLKPLHGQRFVKSLID 123

Query: 129 ---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
              +P         ++   + AV+ E +  NP   VE P+ +      W+ E+ + F ++
Sbjct: 124 EELSPKYIEYIFIVLKGALEDAVKWELLYKNPFEHVEIPRPRKVVNNTWSIEETKIFLTY 183

Query: 186 WSEGSQPRLA-FEFLLYSGLRCSDSCRAGVQHLQ--NN-------------IFSIKTQKT 229
               +      F   L +G+R  +      +++   +               F     KT
Sbjct: 184 AKFDNPIYYHLFLLALNTGMRRGELLGLKWKNVDLIDGKVSVTETLIYDELGFRFTEPKT 243

Query: 230 -GTIITVELPDGFMKLLAMTPI--------------GKETFFINNDKQKMNATQFSIWFK 274
            G+   + +     K L                     +  F   D + +     +  F+
Sbjct: 244 SGSKRLISIDQSLCKELKSYKAKQNEFKLAIGKAYEDNDLVFSREDGKPIYPRTLTTVFE 303

Query: 275 AKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
                A V K   H +R   AT+    G     +    G  ++    +TY+ 
Sbjct: 304 RFIKTAQVPKIRFHDLRHTHATLLLKLGINPKVVSERLGHNSIKTTLDTYSH 355


>gi|167767979|ref|ZP_02440032.1| hypothetical protein CLOSS21_02522 [Clostridium sp. SS2/1]
 gi|167710308|gb|EDS20887.1| hypothetical protein CLOSS21_02522 [Clostridium sp. SS2/1]
          Length = 372

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 42/300 (14%), Positives = 96/300 (32%), Gaps = 13/300 (4%)

Query: 42  TFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ 101
            F+   +         ++      K   +L  L   +  +    + +  +   +  +  Q
Sbjct: 64  QFLENVLVEEFQDVQVKKECTDVAKYNDSLGKLKDMFLATLIVENKSNRTIEQYNLHLTQ 123

Query: 102 IIRKSGDFDYRKITTKHIRSGVESRKHTPS----SAIQFLTSMRVLFKWAVRQEYVAINP 157
            +      D + I    IRS + + K        S     +++   F W V +EY+  +P
Sbjct: 124 FVNYFTGKDAKDIDATGIRSFLYAYKKNRGISNLSLNNKRSAISSFFSWLVDEEYIDKDP 183

Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217
              +++ K   +  + +T ++M++ +   ++  + R   E L  +G R S+     +  +
Sbjct: 184 TRKIKKIKVTKKKKKAFTADEMERMRIACTD-IRDRALIEMLACTGCRVSELSNISLNDV 242

Query: 218 QNNIFSIK-TQKTGTIITVELPDG----FMKLLAMTPIGKETFFINND--KQKMNATQFS 270
                 ++   K     TV + D       + L          F++      ++      
Sbjct: 243 DFLRKKVRIVGKGDKERTVFISDTAMIYLNRYLETRQDNNIALFVSKRFPYDRLRKDGIE 302

Query: 271 IWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRI 329
              +       V    H  R+   T     G     +    G   ++     Y   +DR 
Sbjct: 303 RVVRDLGRMCNVYAHPHKFRRTLCTNLIMRGMPLQNVAILMGHADINMTANVYYDASDRA 362


>gi|260219998|emb|CBA27096.1| Tyrosine recombinase xerC 1 [Curvibacter putative symbiont of Hydra
           magnipapillata]
          Length = 321

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 49/293 (16%), Positives = 89/293 (30%), Gaps = 40/293 (13%)

Query: 72  KWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESR-- 126
             L+ +Y +       LA  +   +     ++  ++       R +   HIR  V     
Sbjct: 6   SALVEKYLEFVRVEKRLAARTVELYSLDLGRLSEQATRAGVTMRDVRNHHIRRWVAQMHS 65

Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
              +       L+  R  + W  R+  V+ NP   V  PK      +    +D  QF  F
Sbjct: 66  AGRSGRGIALILSGWRGFYAWLGREGLVSSNPVQDVRSPKAPKPLPKALAVDDAVQFADF 125

Query: 186 WS-----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKT------QKTGTI 232
            S       ++     E L  SGLR  +     V   ++      ++        K    
Sbjct: 126 ESYDNAWLEARDAAIVELLYGSGLRVGELVGLDVVAGKDAKGWIDMQAAEAHVLGKGSKR 185

Query: 233 ITVELPDGFMKLLA-----MTPIGK--------------ETFFINNDKQKMNATQFSIWF 273
            +V +    M+ L        P G                  F   +  ++ A       
Sbjct: 186 RSVPVGATAMQALQRWLELRGPSGTATAAPVDAAAAHAASALFTGRNGTRLTAQSVWQRL 245

Query: 274 KAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           K ++  AG+N     H +R   A+    +      +    G   +   + YT+
Sbjct: 246 KRRSQLAGLNVPVHPHMLRHSFASHVLQSSGDLRGVQELLGHANITTTQVYTR 298


>gi|24373596|ref|NP_717639.1| phage integrase family site specific recombinase [Shewanella
           oneidensis MR-1]
 gi|24347924|gb|AAN55083.1|AE015645_9 site-specific recombinase, phage integrase family [Shewanella
           oneidensis MR-1]
          Length = 287

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 43/269 (15%), Positives = 91/269 (33%), Gaps = 25/269 (9%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----SRK 127
             L+ ++         +  +R ++     Q+ +   +     IT + + +        R 
Sbjct: 2   SSLLQQFHDEISLRGYSARTRNAYLYAITQL-QHYANQPLDNITDEQLTAYFRYLNLERH 60

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           H+ ++    L  +   ++  +++++      + +  PKR  +  +  + +D+     +  
Sbjct: 61  HSRATLKLQLNGIHFFYEHVLKRDF-----TIQLSLPKRPHKLPQLLSCQDIAALL-YHC 114

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLL 245
           +  + R         GLR S+     V  +      +K    K      V L    + LL
Sbjct: 115 QNLKQRAMLALCYGCGLRVSELTHIKVADIDGQRQLLKVCQGKGACDRWVILSPTLLILL 174

Query: 246 AMT-----PIGKETFFINNDK---QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSAT 295
                   P+  E  F +        ++ + F       A  A +    S H +R   AT
Sbjct: 175 RQYWQAYHPV--EWLFASTYHDVVYPLHESTFRKALAKAARLASITKPCSPHSLRHAYAT 232

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTK 324
               AG   H+L A  G  ++   E Y  
Sbjct: 233 HQLQAGMPLHQLQAQLGHHSIKSTERYLH 261


>gi|123441204|ref|YP_001005191.1| integrase [Yersinia enterocolitica subsp. enterocolitica 8081]
 gi|122088165|emb|CAL10953.1| integrase [Yersinia enterocolitica subsp. enterocolitica 8081]
          Length = 332

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 56/304 (18%), Positives = 113/304 (37%), Gaps = 23/304 (7%)

Query: 29  HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLA 88
            G+RIR     +      +   +  +   +E+++ P      L  LI  +     W    
Sbjct: 21  EGKRIR-RKFDKKAEAQTFERYVLANFHNKEWVDKP-ADKRVLSELIELW-----WKYQG 73

Query: 89  VNSRISFESYFD--QIIRKSGDFDYRKITTKH---IRSGVESRKHTPSSAIQFLTSMRVL 143
            N++   +      +I R+  +     IT K     RS   S   +P++  + L+ +  +
Sbjct: 74  QNTKHGEKEKLRLYKIDREMSNPRIYMITRKFLMEYRSQRLSSGLSPATVNRDLSVLSGM 133

Query: 144 FKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202
           F   +  +E+ + NP  +V + + K   +   +++++    S  + G Q R+A    L +
Sbjct: 134 FSTLIEAEEFHSENPICAVSKLRLKNSEMSFLSEDEIVDLLSK-ATGDQRRIAL-LCLST 191

Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ 262
           G R  ++     +H+  N  +    K G I ++ + D  + ++     G+     N D  
Sbjct: 192 GARWGEAKNLRGEHIVGNKVTFVETKNGKIRSIPISDEMLTIIKTKKSGQ---LFNAD-- 246

Query: 263 KMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
                +F    K         +++H +R   AT     G     L    G   + Q   Y
Sbjct: 247 ---YNEFRSLLKELKPDLPKGQASHALRHTFATHFMMNGGNIITLQRILGHSNIQQTMNY 303

Query: 323 TKGA 326
              A
Sbjct: 304 AHFA 307


>gi|325918374|ref|ZP_08180505.1| tyrosine recombinase XerC subunit [Xanthomonas vesicatoria ATCC
           35937]
 gi|325535397|gb|EGD07262.1| tyrosine recombinase XerC subunit [Xanthomonas vesicatoria ATCC
           35937]
          Length = 302

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 38/256 (14%), Positives = 79/256 (30%), Gaps = 20/256 (7%)

Query: 89  VNSRISFESYFDQIIRKSGD------FDYRKITTKHIRSGV---ESRKHTPSSAIQFLTS 139
              R    +       +  D       D  ++ +  +R  V     R  +  S  + L++
Sbjct: 23  DAYRRDLAALLSWAAEQKNDAGVAVALDVAQLDSAQLRQFVAAEHRRGLSAKSLQRRLSA 82

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WSEGSQPRLAF 196
            R  + W ++   +  +P  ++  PK   +  +    ++  +          G + R   
Sbjct: 83  CRSYYAWLLKHGRITASPAAALRAPKAPRKLPQVLDADEAVRLVEVPTDAPLGLRDRALL 142

Query: 197 EFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE-- 253
           E    SGLR S+ C    + L   +   +   K G    V +    +  L          
Sbjct: 143 ELFYSSGLRLSELCALRWRDLDLASGLVMVLGKGGKQRLVPVGSHAIAALREWQRDSGGR 202

Query: 254 ---TFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELM 308
                F       ++     I  K  A + G+  +   H +R   A+   ++      + 
Sbjct: 203 AETHVFPGRAGGAISQRAVQIRIKQLAVRQGMFKDVHPHMLRHSFASHILESSGDLRGVQ 262

Query: 309 ATYGWKTVDQAETYTK 324
              G   +   + YT 
Sbjct: 263 ELLGHSDIATTQIYTH 278


>gi|315223453|ref|ZP_07865310.1| tyrosine recombinase XerD [Capnocytophaga ochracea F0287]
 gi|314946626|gb|EFS98617.1| tyrosine recombinase XerD [Capnocytophaga ochracea F0287]
          Length = 307

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 39/253 (15%), Positives = 94/253 (37%), Gaps = 22/253 (8%)

Query: 93  ISFESYFDQIIRKSG-DFDYRKITTKHIRSGVESRKH---TPSSAIQFLTSMRVLFKWAV 148
            SFE +   +  + G D    +   + I+  +        +  S  + L++++  + +  
Sbjct: 29  RSFEKFIKSLYEEKGEDCCLEQADQEDIKKWIIHLSDETISFRSINRKLSALKTYYNFLK 88

Query: 149 RQEYVAINPC-LSVERPKRKTEGIRPWTKEDMQQFKSFWS-----EGSQPRLAFEFLLYS 202
           + + + I+P    +   K + +   P+++ ++++  SF+S     +  + R   E L  +
Sbjct: 89  KTKQIEISPFEKGIFLLKTEKKHKLPFSEAEIEKVLSFFSSKDSFDEVRNRAVIETLYAT 148

Query: 203 GLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPI---------GK 252
           G+R S+     V  +      IK   K      + +       L    +          +
Sbjct: 149 GIRRSELSGLKVSDVDFEQKQIKVLGKGDKERYIPIIPELENTLKEYLVLREEVKNEKSQ 208

Query: 253 ETFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSAHGVRKFSATISADAGATAHELMAT 310
           +  F+  + +K+ +T       +         + S H +R   A+   D GA  + +   
Sbjct: 209 DYLFLVKNGKKIYSTLVYRIINSYFSVVTTKKDVSPHVLRHSFASHLLDNGADLYTVKEL 268

Query: 311 YGWKTVDQAETYT 323
            G  ++   + YT
Sbjct: 269 LGHSSLASTQVYT 281


>gi|220930678|ref|YP_002507587.1| integrase family protein [Clostridium cellulolyticum H10]
 gi|220001006|gb|ACL77607.1| integrase family protein [Clostridium cellulolyticum H10]
          Length = 423

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 59/376 (15%), Positives = 119/376 (31%), Gaps = 42/376 (11%)

Query: 6   RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
           R P  + +   ++GK      K   + I          + A M     +  K  YI+   
Sbjct: 35  RYPIGLKETIDKNGKPCC---KTVYKSIYGKKKTGPGGVMAEMRNALAALGKGTYIDPSD 91

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVE 124
           K   TL     E+ ++     L  N+R+ +E+   ++ R    D   + ++ + I+    
Sbjct: 92  K---TLIVWCQEWYETYKEPKLKTNTRLKYETSITRLKRYSIADMQLKNLSLELIQKDYN 148

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQ----EYVAINPCLSVERPKRKTEG-----IRPWT 175
                  S  + + +   L   A+ +      +  NP   V  P+   +       +   
Sbjct: 149 RMAKDGLS-EETIKATHSLVNGALEKAEALNKINKNPARHVTIPRTDEDDAEESNTKALN 207

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------ 229
              +  F       S+  +   F+L +GLR  ++       +      IK  KT      
Sbjct: 208 DTQLDAFLYQIGRRSKYFMYAFFMLNTGLRPGEALALTRSDIDFTTNKIKVTKTYIEKLK 267

Query: 230 ---------GTIITVELPDG----FMKLLAMTPIGKET--FFINNDKQKMNATQFSIWFK 274
                     +   V +P        + +   P  + T   F     ++ +       FK
Sbjct: 268 KVQNSTKTASSRRKVPIPSEMISLLKEYMLQQPKKEPTDPLFQTATGKRPSQGYLRKRFK 327

Query: 275 AKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLG 332
                AG    + H +R   A+           +    G K V    + Y    D   + 
Sbjct: 328 YAGASAGCEWVNLHTMRHTFASRLFKKKVDIKVISELLGHKDVSTTYDIYVHFID--NIV 385

Query: 333 IKNSRRISSVVDSDDP 348
            ++ + ++S +  + P
Sbjct: 386 EESVQVLNSDIPENLP 401


>gi|303240629|ref|ZP_07327144.1| integrase family protein [Acetivibrio cellulolyticus CD2]
 gi|302591866|gb|EFL61599.1| integrase family protein [Acetivibrio cellulolyticus CD2]
          Length = 279

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 37/266 (13%), Positives = 92/266 (34%), Gaps = 18/266 (6%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----SRKHT 129
           L  + +        +  ++I++  + +   +         +  + I++ +      RK +
Sbjct: 4   LREQMKYDMDLKGFSEKTKIAYLKHVELFAKYF-KKSPELLGEEEIKAYLHHQLIERKMS 62

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            S   Q  ++++ L++  +++E+ +      + R KR+ +  +  ++E++++  +  +  
Sbjct: 63  RSYNTQAYSALKFLYETTLKREWKSY----KIPRCKREKKLPKVLSREEVKRIFNVTTNP 118

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPD----GFMKL 244
              R        SGLR S+     V  +             G      +        ++ 
Sbjct: 119 KH-RAILMTTYSSGLRVSEVVNLKVNDIDGKRLQLFVQGGKGQKDRYTVLSRKNLELLRD 177

Query: 245 LAMTPIGKETFFINND-KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301
                  K   F   D  + +        F+    KAG+ K  S H +R   AT   ++G
Sbjct: 178 YWKLYHPKTWLFPGQDINEPLCVRTVQKVFENSVRKAGITKDVSVHTLRHSFATHLLESG 237

Query: 302 ATAHELMATYGWKTVDQAETYTKGAD 327
                +    G  ++     Y    +
Sbjct: 238 VDTFYIQKLLGHSSLKTTSIYIHVGN 263


>gi|256845130|ref|ZP_05550588.1| integrase/recombinase [Fusobacterium sp. 3_1_36A2]
 gi|256718689|gb|EEU32244.1| integrase/recombinase [Fusobacterium sp. 3_1_36A2]
          Length = 328

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 42/295 (14%), Positives = 97/295 (32%), Gaps = 44/295 (14%)

Query: 88  AVNSRISFESYFDQIIR--KSGDFDY---------RKITTKHIRSGV----ESRKHTPSS 132
           +  +   +  +    +     G+ D+         + I  + + + +    E RK   +S
Sbjct: 33  SEKTVKDYMFHLKDFLHFVYDGENDFSISEVIPLMQDIEKEDVEAYIVHLFEDRKLKKTS 92

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW--TKEDMQQFKSFWSEGS 190
               L++++ L+K          NP   ++  K           + +D+++    +   S
Sbjct: 93  VNTILSALKSLYKELESNGL--KNPVKYIKLFKVNRNIENVLKVSIDDIRKIIGLYKIDS 150

Query: 191 QPR----LAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDGFM 242
           + +         L Y+G+R  +      +H         F +   K+G  +   +    +
Sbjct: 151 EKKYRNITILYTLFYTGMRSKELLTLKFKHYLKREDEYFFKLIQTKSGKDVYKPIHKSLV 210

Query: 243 K-------------LLAMTPIGKETFFINN--DKQKMNATQFSIWFKAKATKAGVNKSAH 287
           K              L +  + ++  F+ +  D   ++    +   +      G + S H
Sbjct: 211 KKLEEYKKYLISMYSLDLKDLDEKYIFLTSVLDNTPLSYRSLNAIIQDMGKMIGKDISPH 270

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
            +R   AT  + +GA   E+    G       E Y     R  L  K   ++  +
Sbjct: 271 NIRHAIATELSLSGADILEIRDFLGHSDTKVTEVYINA--RSILEKKVLEKLPEI 323


>gi|253577741|ref|ZP_04855025.1| tyrosine recombinase xerC [Paenibacillus sp. oral taxon 786 str.
           D14]
 gi|251842867|gb|EES70932.1| tyrosine recombinase xerC [Paenibacillus sp. oral taxon 786 str.
           D14]
          Length = 321

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 48/321 (14%), Positives = 110/321 (34%), Gaps = 44/321 (13%)

Query: 46  AYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK 105
            Y+SA+    P    +    +    ++  ++         + A N+R ++    +   + 
Sbjct: 4   NYLSAVAQQFPFHLSVTQDYQDEQIIQMFLTA-------CAKAPNTRRNYFRALEHFRQF 56

Query: 106 SGDFDYRKITTKHIRSGV----------ESRKHTPSSAIQFLTSMRVLFKWAVRQ--EYV 153
                +R +T + I +              +   P+S   F+  ++  +KW       + 
Sbjct: 57  LSGMRFRDVTWREIEAYKIYLTKGFYRDGQKPLAPASVAAFIAPLKSFYKWGSDSSIGFF 116

Query: 154 AINPCLSVERPKRK-TEGIRPWTKEDM-QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCR 211
             NP  +V  P    T      T+ ++ +  ++   +  +  L    L+  GLR S+ C 
Sbjct: 117 DHNPAQNVRIPAIAVTSRRHYLTRNEVGKLLEALRRQSLRNYLIGLSLVLLGLRVSELCG 176

Query: 212 AGVQHLQNN------IFSIKTQKTGTIITVELPDGF----MKLLAMTPIGKET-----FF 256
              +    +        ++   K G    V++P        +       G E       F
Sbjct: 177 IKWKDFHADMLETSIWLTVSHAKRGKTREVKIPRELWNMYQEHARRLAKGHEPDPELKLF 236

Query: 257 INNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWK 314
                  +   Q     K     +G+ K  + H +R  +AT++   GA+  ++  + G  
Sbjct: 237 ------AITPRQIERIIKQAGIASGIQKQPTPHWLRHTNATLALLQGASLQQVQESLGHS 290

Query: 315 TVDQAETYTKGADRIRLGIKN 335
            ++  + Y    ++I+    +
Sbjct: 291 HINTTQRYLHTVEQIKKAAPD 311


>gi|229593315|ref|YP_002875434.1| site-specific tyrosine recombinase XerC [Pseudomonas fluorescens
           SBW25]
 gi|259710435|sp|C3K438|XERC_PSEFS RecName: Full=Tyrosine recombinase xerC
 gi|229365181|emb|CAY53449.1| tyrosine recombinase [Pseudomonas fluorescens SBW25]
          Length = 299

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 35/259 (13%), Positives = 88/259 (33%), Gaps = 19/259 (7%)

Query: 85  GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLT 138
             ++ ++  ++    +++     K     ++ +  + +RS +        +  S  + L+
Sbjct: 16  RQVSPHTLEAYRRDLNKVLAYCEKQQISSWKALDIQSLRSLIARLHQAGQSSRSLSRLLS 75

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRL 194
           ++R L+ +  R+     +P   +  PK +    +    +   Q      E      + + 
Sbjct: 76  AVRGLYHYLNREGLCDHDPANGLSPPKGERRLPKTLDTDRALQLLDGAVEDDFLAHRDQA 135

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-ELPDGFMKLLAM------ 247
             E    SGLR S+     +  L      ++    G+   V  +     + L +      
Sbjct: 136 ILELFYSSGLRLSELTGLNLDQLDLADGLVQVLGKGSKTRVLPVGRKAREALQLWLPLRL 195

Query: 248 -TPIGKETFFINNDKQKMNATQFSIWFKAK-ATKAGVNKSAHGVRKFSATISADAGATAH 305
            T    +  F++   +++      +  KA    + G N   H +R   A+   ++     
Sbjct: 196 LTNPADDAVFVSQQGRRLGPRAIQVRVKAAGERELGQNLHPHMLRHSFASHMLESSQDLR 255

Query: 306 ELMATYGWKTVDQAETYTK 324
            +    G   +   + YT 
Sbjct: 256 AVQELLGHSDIKTTQIYTH 274


>gi|323973234|gb|EGB68426.1| phage integrase [Escherichia coli TA007]
          Length = 331

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 43/235 (18%), Positives = 87/235 (37%), Gaps = 14/235 (5%)

Query: 94  SFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQ 150
           ++ +  +++IR+ GD    ++T K +      +      PSS  + L ++  +F   +  
Sbjct: 81  TYRTRLEKVIREMGDPRASQMTRKFMIEYRSDKLQAGLMPSSINRDLCALSAMFSLLIDA 140

Query: 151 E-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDS 209
           E Y   NP   + + K +   +   + +++ +      EG   R+A    L +G R  ++
Sbjct: 141 EVYHNENPVRGIRKLKVQNTEMAFLSDDEIDRLLKRL-EGDARRIAI-LCLSTGARWKEA 198

Query: 210 CRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF 269
                +H+  N  +    K G   +V + D  + L+     G           +++   F
Sbjct: 199 STLRGEHIVGNRVTFFNTKNGKSRSVPVADSVVPLIKTRRTGLLY--------QVDYLSF 250

Query: 270 SIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
               +         ++ H +R   AT     G     L    G  T+ Q  TY  
Sbjct: 251 REILQEVKPDLPKGQATHVMRHTFATHFMMNGGNIVTLQRILGHATIQQTMTYAH 305


>gi|225164361|ref|ZP_03726626.1| integrase family protein [Opitutaceae bacterium TAV2]
 gi|224801041|gb|EEG19372.1| integrase family protein [Opitutaceae bacterium TAV2]
          Length = 329

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 44/249 (17%), Positives = 86/249 (34%), Gaps = 24/249 (9%)

Query: 100 DQIIRKSGDFDYRKITTKHIRSGV--ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINP 157
           D     +      K+T + +R  V    R+    +    ++ +R  +K+ +R   V+ NP
Sbjct: 64  DAANESAASLAPDKLTPRDLRDFVIEGQRRFDRRTLHNHVSGLRSFYKYWLRHGRVSRNP 123

Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFWSE------------GSQPRLAFEFLLYSGLR 205
            + +  PK +    +  T++ M+   S                  + RLA E L   GLR
Sbjct: 124 LVGLALPKLEKRLPKFLTEQQMKLLLSGPQRLLDNVADITPFTAWRDRLAMELLYGGGLR 183

Query: 206 CSDSCRAGVQHLQNNIFSIKTQKTGTI--------ITVELPDGFMKLLAMTPIGKETFFI 257
            S+        +       +    G          + + +   +    A          +
Sbjct: 184 VSELTALDYGQIDFTSGVARVLGKGRKERLCPLGKVALAVLVKWKNEYARDTSPAAPVLV 243

Query: 258 NNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKT 315
             + ++M   Q  +  K     AG+  + S H +R   AT   +AGA    +    G  +
Sbjct: 244 TPEHERMPVRQVQLMLKRYLALAGLPTDLSPHKLRHSYATHLLNAGADLRLVQELLGHAS 303

Query: 316 VDQAETYTK 324
           ++  + YT 
Sbjct: 304 LNTTQIYTH 312


>gi|27375301|ref|NP_766830.1| site-specific integrase/recombinase [Bradyrhizobium japonicum USDA
           110]
 gi|34222843|sp|Q89XW5|XERD_BRAJA RecName: Full=Tyrosine recombinase xerD
 gi|27348437|dbj|BAC45455.1| xerD [Bradyrhizobium japonicum USDA 110]
          Length = 318

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 42/279 (15%), Positives = 87/279 (31%), Gaps = 38/279 (13%)

Query: 89  VNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL 143
            N+  ++           G       D    T +   + +++R    +S  + L++MR L
Sbjct: 26  PNTLDAYRRDLTDFSEFLGRVGHSFADAETQTLRDYLADLDTRGFKSTSVARRLSAMRHL 85

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA-------- 195
           +++ + +     +P   +  PKR     +  +  D+ +      E S+   A        
Sbjct: 86  YRFLLNERIRGDDPAAILSGPKRGRGLPKVLSIADVDRMLRRARELSEAEDASPSKRLRA 145

Query: 196 ------FEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDG-------F 241
                  E L  +GLR S+         + +    +   K      V L +        +
Sbjct: 146 LRLYCLLEVLYATGLRVSELVALPRTAAKRDARMIVVRGKGNKERLVPLNEASRQAMADY 205

Query: 242 MKLLAMTPIGKET------FFINNDK--QKMNATQFSIWFKAKATKAGVNK---SAHGVR 290
           +         K+T      +   +      +    F+   K  A  +G+     S H +R
Sbjct: 206 LAATEAAKSDKKTGVAASKWLFPSFGESGHLTRQHFARDLKELAVASGLQARLVSPHVLR 265

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              A+     GA    +    G   +   + YT   +  
Sbjct: 266 HAFASHLLHNGADLRIVQTLLGHTDISTTQIYTHVVEER 304


>gi|90425347|ref|YP_533717.1| phage integrase [Rhodopseudomonas palustris BisB18]
 gi|90107361|gb|ABD89398.1| phage integrase [Rhodopseudomonas palustris BisB18]
          Length = 400

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 67/360 (18%), Positives = 125/360 (34%), Gaps = 32/360 (8%)

Query: 10  FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALT---------GSTPKREY 60
            V ++R      +  +R    +R     PH S + P                G  P  E 
Sbjct: 33  GVRRQRD-QATYVLKYRLFGRQRFVTIGPHGSPWTPELARKEAKRLLGLVAIGKDPADEK 91

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
             +  +   TL+ +  +Y ++A    L   +    E Y     +        +IT +HI 
Sbjct: 92  AKARLQAADTLRAIADQYLRNAK-QRLKPRTYSEIERYLLVSWKPLHPVSVFQITRRHIS 150

Query: 121 SGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEY-VAINPCLSVERPKRKTEGIRPWTKE 177
           + +      H   SA +  T++  +F WA+R+   +A NP L   RP +     R  T+ 
Sbjct: 151 ARIADFESAHGAVSAARARTALSSMFNWAIREGLEIAANPVLGTNRPAQPGSRERVLTET 210

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTGTIITV 235
           ++        +    R+    LL +  R  +        L     ++++ + +T      
Sbjct: 211 ELSAIWHACGDDDYGRIVRLLLL-TAQRRDEVGSMQWAELDTFSGLWTLPSARTKNHREH 269

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNAT---QFSIWFKAKATKAG----------V 282
            LP     L  + P      F+  D  + +      FS W K+KA               
Sbjct: 270 SLPFVPAALALLPPRRDGLDFLFGDGPRRSGDPHRGFSGWSKSKAALDARIAEALGNPLP 329

Query: 283 NKSAHGVRKFSATISADA-GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
           + + H +R+ ++T+ AD  G   H + A     +  +A       +R R   +    +  
Sbjct: 330 HWTVHDLRRSASTVMADRLGVLPHIVEAILNHVSGHRAGV-AGVYNRARYATEMREALER 388


>gi|34581137|ref|ZP_00142617.1| integrase/recombinase [Rickettsia sibirica 246]
 gi|28262522|gb|EAA26026.1| integrase/recombinase [Rickettsia sibirica 246]
          Length = 305

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 48/284 (16%), Positives = 106/284 (37%), Gaps = 28/284 (9%)

Query: 69  TTLKWLISEYRKSAHWG-SLAVNSRISFESYFDQIIR-----KSGDFDYRKITTKHIRSG 122
           T+++ LI++++K      + + ++ IS+ +     +       S       I T  IR  
Sbjct: 4   TSIQALINKWQKYLVLQRNYSNHTVISYNNDLKHFLEFMNYYNSELVTINHIKTADIRLI 63

Query: 123 VESRKH------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
                       T SS  + L++++  +++  +   +  +   S++ PK+     +  ++
Sbjct: 64  RSWLAKRNCDNFTASSISRGLSAVKNFYRFLEKTTQLNSHIIFSIKSPKKTKLLPKALSE 123

Query: 177 ED-------MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229
           +D       ++++ +      + +     +  SGLR S++      HLQN  F     K 
Sbjct: 124 DDVVISLEHIEEYGNVKWVELRNKALLVLIYASGLRISEALSITKLHLQNLEFIRIIGKG 183

Query: 230 GTIITVELPD-------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
                +            ++++L       E  F     +K+    F+          G+
Sbjct: 184 SKERIIPWLPIAKNLITQYLEILPYKLGDNEPIFRGKQGKKLQPPVFNRELIKLKHFYGL 243

Query: 283 --NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             + +AH  R   A+   + GA    L    G K++   + YTK
Sbjct: 244 PQHLTAHSFRHSFASHLLEHGADLRSLQELLGHKSLSTTQNYTK 287


>gi|213692031|ref|YP_002322617.1| phage integrase family protein [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|213523492|gb|ACJ52239.1| phage integrase family protein [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|320458143|dbj|BAJ68764.1| putative phage integrase [Bifidobacterium longum subsp. infantis
           ATCC 15697]
          Length = 391

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 59/345 (17%), Positives = 105/345 (30%), Gaps = 37/345 (10%)

Query: 11  VTKERTRHGKIIYY--FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
           VT+ +T  G+  Y   +RK  G +              + +              P    
Sbjct: 4   VTRYKTSKGENRYRVRYRKPDGTQTDKRGFRRKIDAENWAAEHVTIAKATNSYVDPEDGK 63

Query: 69  TTLKWLISEYRKSAHWGSLAVNSR-ISFESYFDQIIRKSGDFDYRKITTKHIRSGVES-- 125
             +  L  ++ K   W      +R  + E++      +  D     IT   +++ +    
Sbjct: 64  RRVGDLYEQWLKE-KWPFWKETTRVNATEAWRLYCEERWADRRIGTITRAEVQAWISDII 122

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP--WTKEDMQQFK 183
                 S  +   +M  + + AVR + +  NPC +VE PK      R    T   +  F 
Sbjct: 123 ASAGAPSVRRPYQTMLGICRMAVRDKLILDNPCENVELPKLPRRKSRRVYLTISRLLAFA 182

Query: 184 SFWSEGSQ---PRLAFEFLL-YSGLRCSDSCRAGVQHLQNNIFSIKTQ------------ 227
              S G      R A    L + GLR  ++     + L      +               
Sbjct: 183 DECSRGKHLGAERRALVLTLGFCGLRWGEAAALKARDLDFGRGVLHVGGNLVYVGARWVE 242

Query: 228 ---KTGTIITVELP---DGFMKLLAMTPIGKETFFINNDKQKMNATQFSI---WFKAKAT 278
              K      V +P      +K +       E  F +     +     +    W+     
Sbjct: 243 GTPKNSEERDVPMPLIVMEALKPMCGEREPDERVFRDLRGGPIMKQSAAKTTGWWYHALV 302

Query: 279 KAGVNK----SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
           + G  K    + H +R  +A+++  AGA    L    G K     
Sbjct: 303 RLGWPKEEWPTPHDLRHTAASLAVHAGANVKALQRMLGHKNASMT 347


>gi|325679322|ref|ZP_08158907.1| phage integrase, N-terminal SAM-like domain protein [Ruminococcus
           albus 8]
 gi|324108919|gb|EGC03150.1| phage integrase, N-terminal SAM-like domain protein [Ruminococcus
           albus 8]
          Length = 336

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 38/254 (14%), Positives = 90/254 (35%), Gaps = 24/254 (9%)

Query: 109 FDYRKITTKHIRSGV-ESRKHTPSSAIQFLTSMRVLFKWA-VRQEYVAINPCLSVERPKR 166
              R I   +    + + R ++  +  +  ++++  + +  +++  ++ +P   +E PK 
Sbjct: 73  KKIRLIDAYNYLKWLADERGNSIKTRARKTSALKQFYSYLHLKKGLISSDPIEQLELPKL 132

Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
                +  T  D Q+  +     +  R        L  G+R S+ C      +     ++
Sbjct: 133 PKTLPKYLTLGDAQKLLAAVESANYERDYCMITLFLNCGMRLSELCGLNTDDISFENGTM 192

Query: 225 KT-QKTGTIITVELPDGFMKLLA-------MTPIGKETFFINNDKQKMNATQFSIWFKAK 276
           +   K      V + D  ++ L              +  F++N   +++        +  
Sbjct: 193 RLFGKGSKERIVYMNDACVEALKAYLPRRSAVQTTDKALFLSNRNTRISRRMTQYIVEES 252

Query: 277 ATKAG---VNKSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTK-------- 324
             KAG   +  + H +R  +AT+    G      L    G +++   E YT         
Sbjct: 253 LKKAGLGNLGITTHKLRHTAATLMYQYGNVDTLVLKDILGHESLATTEIYTHLTSQNLRD 312

Query: 325 GADRIRLGIKNSRR 338
            A+   L  ++ R+
Sbjct: 313 AANANPLADQHIRK 326


>gi|331090722|ref|ZP_08339570.1| hypothetical protein HMPREF9477_00213 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330399991|gb|EGG79647.1| hypothetical protein HMPREF9477_00213 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 283

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 36/274 (13%), Positives = 97/274 (35%), Gaps = 18/274 (6%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---TP 130
            + +  ++    +L   S   +++Y    + K       ++T + +R+ + ++K      
Sbjct: 5   YLEQLEEAGKIRNLKERSINCYKNYVSYFL-KYQAKPPEELTCQDVRNFLLAKKEEGLKA 63

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           ++   + +S+R  ++  +   +      ++V R   + +     T +++ +      +  
Sbjct: 64  TTLNLYNSSIRFFYRNVLHILWDD----ITVPRMILEHKLPTVLTVDEIDRLLEAVDD-I 118

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE------LPDGFMKL 244
           + R  F  +  SG+R S+        +  +   I  + T   +           D   + 
Sbjct: 119 KYRAMFATMYSSGMRVSEVIHLHYDDISRSNMQIHVRDTKNRMDRYTILSKRCLDILTQY 178

Query: 245 LAMTPIGKETFFINND-KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301
                  +   F N      +  +      +   + A + K  + H +R   AT   + G
Sbjct: 179 WFEKGRPRGILFPNKFTGNYLTVSTLEQVMRRAVSDAELPKKATPHCLRHSFATHLMEQG 238

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335
                + A  G +     E Y   +++  +GI++
Sbjct: 239 VERQNIQALLGHRDPKSTEVYLHVSNKSLMGIQS 272


>gi|21242957|ref|NP_642539.1| phage-related integrase [Xanthomonas axonopodis pv. citri str. 306]
 gi|21108460|gb|AAM37075.1| phage-related integrase [Xanthomonas axonopodis pv. citri str. 306]
          Length = 399

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 56/325 (17%), Positives = 107/325 (32%), Gaps = 37/325 (11%)

Query: 45  PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-II 103
             +++ +          N+ RK P T++     + +         +++  ++   D+ II
Sbjct: 75  QEWLAEVRKGGDPSAAKNAARKAP-TMREFCHTFMEDYSKQRNKPSTQRGYQGVIDRCII 133

Query: 104 RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA--INPCLSV 161
              G    + +    + + ++   +  + A +    +R +F  A          NPC  V
Sbjct: 134 PIMGRMKVQDVKRPDVAALMKRLAYKQAEANRTFGVLRKMFNLAEVWGLRPDGTNPCRHV 193

Query: 162 ERPKRKTEGIRPWTKEDMQQFKSF----------WSEGSQPRLAFEFLLYSGLRCSDSCR 211
                  E       E ++ F+            +      RL FEF      R S+ C 
Sbjct: 194 PMYPPGKETRLIVDDELVRIFRHLEHLEAEGLENYVIPLAIRLQFEFA----ARRSEICP 249

Query: 212 AGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI----NNDKQKMN 265
                +   N        KTG  I+  + +   +LL+  P  +   ++    N+  + M 
Sbjct: 250 LEWAWVDLENRRVVWPDSKTGG-ISKPMSEEAYRLLSTAPRREGCPYVLPSPNDPTRHMT 308

Query: 266 -ATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
               +  W +        +   HG+R  + T  A++G      M   G KTV     Y  
Sbjct: 309 HGEHYGGWTRVLKAAGVPHVGTHGIRHRATTDIANSGVPTKVGMKLTGHKTVAMFMHYVH 368

Query: 325 GADR-----------IRLGIKNSRR 338
             D+            RL I  + R
Sbjct: 369 TEDKPVRDAAELVANRRLAITGASR 393


>gi|158320082|ref|YP_001512589.1| integrase family protein [Alkaliphilus oremlandii OhILAs]
 gi|158140281|gb|ABW18593.1| integrase family protein [Alkaliphilus oremlandii OhILAs]
          Length = 369

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 47/308 (15%), Positives = 105/308 (34%), Gaps = 38/308 (12%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH- 128
           TL+  +  + +     ++A  +   +    +++    G+   ++I   HI+  V    + 
Sbjct: 62  TLRDYMQLWLEDYAKPNVAPTTYDKYTYAANKVSEILGNMKLQQIKPIHIQQLVNKLNNS 121

Query: 129 --TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             TPS+ + +   +      AV+ +++  NPC++V  P+     +    ++++Q      
Sbjct: 122 DVTPSTVLSYYRVLNTAINQAVKWQFIQYNPCVAVTPPRNTKNKMMILDQDEIQILLDKS 181

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---------------NNIFSIKTQKTGT 231
            +           L  GLR  +      +++                NN   +K  KT T
Sbjct: 182 KDHVL-YPVIVLALLCGLRRGEILGLQWENIDFFSGVIHLENNLVMANNESILKETKTST 240

Query: 232 -IITVELPDGFM-------------KLLAMTPIGKETFFIN-NDKQKMNATQFSIWFKAK 276
               V++    +             KLL  +      F     D +          F   
Sbjct: 241 GRRAVDISSNVVEVLKKVKKQKMSYKLLYGSSYHDSNFVCTWEDGRPFRPDYIPKAFAKI 300

Query: 277 ATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIK 334
              A + K   H +R   A+I   +G     +    G  ++    +TY+       L   
Sbjct: 301 LVSANLPKIRFHDLRHTHASILLKSGIHPKVVQERLGHSSISITLDTYSHLV--PSLQKS 358

Query: 335 NSRRISSV 342
            + +++++
Sbjct: 359 AAEKMATM 366


>gi|73666749|ref|YP_302765.1| Phage integrase, N-terminal SAM- like [Ehrlichia canis str. Jake]
 gi|72393890|gb|AAZ68167.1| Phage integrase, N-terminal SAM- like protein [Ehrlichia canis str.
           Jake]
          Length = 309

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 37/273 (13%), Positives = 91/273 (33%), Gaps = 33/273 (12%)

Query: 90  NSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVESRKHTPSSAIQFLTSMRVLF 144
           N+  S+++    +       +   + T     ++    +  + +  ++ ++ +++++  +
Sbjct: 23  NTYQSYKTDLLGLCEFVSKKNLLLVDTSINELQNYIRLLYEKGYKANTVLRKISAIKNFY 82

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-----SEGSQPRLAFEFL 199
            +  R   +  +P L ++ PK      +  + E++ +           +G +       L
Sbjct: 83  GFLYRDNMIESDPTLYLDAPKLSRSLPKALSFEEISRLLDVAALDGSPDGRRLNAMVNIL 142

Query: 200 LYSGLRCSDSCRAG-------VQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAMTPIG 251
             SG+R S+            ++     I+ IK   K      V L    ++ +      
Sbjct: 143 YSSGIRISELVCLKFYSVLEALKDHNAEIYHIKIKGKANKERIVLLNLSAVESIKKYIEI 202

Query: 252 KETFFIN------------NDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATI 296
            + F  N                 +   +     K  A  AG++    S H +R   AT 
Sbjct: 203 YKYFVPNGFEVSQWLFPGTKFDYPITRQRVGQLLKDLAMNAGIDITKISPHKLRHSFATH 262

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             + G+    +    G   +   + YT  A+  
Sbjct: 263 LLNNGSNIIFIQKMLGHANLSTTQIYTHIANEK 295


>gi|169826673|ref|YP_001696831.1| integrase-recombinase protein [Lysinibacillus sphaericus C3-41]
 gi|168991161|gb|ACA38701.1| integrase-recombinase protein [Lysinibacillus sphaericus C3-41]
          Length = 275

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 46/274 (16%), Positives = 97/274 (35%), Gaps = 13/274 (4%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HTPSS 132
           ++EY       + AV +   ++   ++ +R+      + +T++++R  +        P++
Sbjct: 1   MNEYLLCLKLENKAVATITKYKWILERFLREC-KVPLKDMTSENVREWINDFSIDKKPNT 59

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS-Q 191
                 ++   F++   +EY+         RP+          + +  + K    + S +
Sbjct: 60  IALVHATLSTFFQFCFDEEYIERVIIKKRWRPQLPKSLPNYLDEYEFSRIKLISEQLSIR 119

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-----VELPDGFMKLLA 246
            R    FLL SG R S+     ++ +  +  + +    G  I      +E        L 
Sbjct: 120 DRAIILFLLTSGCRVSEMSALNIKDINMDKHTAEVVGKGNKIRTIHFSLECAIALQNYLQ 179

Query: 247 MTPIG-KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGAT 303
                 KE  F+N    ++         K    +AG+ K    H  R   AT     GA 
Sbjct: 180 ARTCDPKEPLFMNKFGDRLLNGGIRGVLKKVGKQAGLEKIFHPHCCRHTFATNLLARGAD 239

Query: 304 AHELMATYGWKTVDQAETYTKG-ADRIRLGIKNS 336
              +    G   ++    Y +  ++  RL  +N 
Sbjct: 240 LQFIADEMGHADLNTTRIYAQIPSEDKRLKYQNI 273


>gi|67459687|ref|YP_247311.1| site-specific tyrosine recombinase XerC [Rickettsia felis
           URRWXCal2]
 gi|75535922|sp|Q4UJZ3|XERC_RICFE RecName: Full=Tyrosine recombinase xerC
 gi|67005220|gb|AAY62146.1| Tyrosine recombinase XerC [Rickettsia felis URRWXCal2]
          Length = 305

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 47/284 (16%), Positives = 105/284 (36%), Gaps = 28/284 (9%)

Query: 69  TTLKWLISEYRKSAHWG-SLAVNSRISFESYFDQIIR-----KSGDFDYRKITTKHIRSG 122
           T+++ LI +++K      + + ++ IS+ +     +       S       I T  IR  
Sbjct: 4   TSIQELIDKWQKYLDLQRNYSNHTVISYNNDLKHFLEFMNYYNSELVTINHIKTADIRLI 63

Query: 123 VESRKH------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
                       T SS  + L++++  +++  +   +  +   S++ PK+     +  ++
Sbjct: 64  RSWLAKRNCDNFTTSSISRGLSAVKNFYRFLEKTTQLNSHIIFSIKSPKKTKLLPKALSE 123

Query: 177 ED-------MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229
           +D       ++++ +      + +     +  SGLR S++      HLQN  F     K 
Sbjct: 124 DDVVISLEHIEEYGNVKWVELRNKALLVLIYASGLRISEALSITKLHLQNLEFIRIIGKG 183

Query: 230 GTIITVELPD-------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
                +            ++++L       E  F     +K+    F+          G+
Sbjct: 184 SKERIIPWLPIAKNLITQYLEILPYKLGDNEPIFRGKQGKKLQPPVFNRELIKLKHFYGL 243

Query: 283 --NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             + +AH  R   A+   + GA    +    G K++   + YTK
Sbjct: 244 PQHLTAHSFRHSFASHLLEHGADLRSIQELLGHKSLSTTQNYTK 287


>gi|83312747|ref|YP_423011.1| integrase [Magnetospirillum magneticum AMB-1]
 gi|82947588|dbj|BAE52452.1| Integrase [Magnetospirillum magneticum AMB-1]
          Length = 363

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 55/314 (17%), Positives = 103/314 (32%), Gaps = 16/314 (5%)

Query: 27  KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGS 86
           + HG   +       T   A+  +L G   +  +I+    +  TL   I  Y  +     
Sbjct: 53  RRHGFPTQSKTFDRKTDADAWARSLEGEMDRGAFIDRRPAEQMTLADAIRHYLDAVAPTH 112

Query: 87  LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTSMRVLF 144
              +   +    F +       +    + T HI    + R     P S  + +  +  + 
Sbjct: 113 KGADVEAARLGRFLREEPDLCRYALSNLRTHHIEDYRDRRLEAVAPGSLCREINLLHAVL 172

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP--RLAFEFLLYS 202
           +   R+  +  NP   V RPK   E     + ++  Q  S       P  +      L +
Sbjct: 173 ESVRRRVGLVDNPVSHVRRPKVNDERDVRLSLDEEAQLLSALDATRNPWIKPFVIVALET 232

Query: 203 GLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG-KETFFINN 259
            +R  +      +H+        +   K G   TV L    +K L   P       F   
Sbjct: 233 AMRRGEMLALRWEHVDLVQQTAHLPETKNGKGRTVPLSSRAVKTLEALPRSIGGAVF--- 289

Query: 260 DKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
               ++       +     +AG++    H +R  + +  A+ G    EL A  G + +  
Sbjct: 290 ---PVSLDSLKHAWTRARDRAGLHHFHLHDLRHEATSRLAERGWNILELAAVTGHQDLQM 346

Query: 319 AETYT--KGADRIR 330
            + YT  + AD  +
Sbjct: 347 LKRYTNLRAADLAK 360


>gi|255012644|ref|ZP_05284770.1| site-specific recombinase [Bacteroides sp. 2_1_7]
          Length = 373

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 49/267 (18%), Positives = 91/267 (34%), Gaps = 20/267 (7%)

Query: 95  FESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF-----LTSMRVLFKWAVR 149
             S  + +         + I T  ++  +   +  P     F        + V    AV+
Sbjct: 111 LRSLANHLRDYMPQCLLKDIDTGFVKGFIAHLRKQPYLKSDFTIHGYYRLLNVTLNKAVK 170

Query: 150 QEYVAINPCLSV---ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRC 206
           +  +  NPC  +   E+P + T      T E++++         + + AF F  + GLR 
Sbjct: 171 KGLILSNPCSLLDTDEKPHKPTSLRTYLTLEELKRLIRTDCVCPEVKKAFLFCCFCGLRI 230

Query: 207 SDSCRAGVQHLQNN-----IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK 261
           SD      + +Q          I  +KT   I + L +  +K L       +   +    
Sbjct: 231 SDLTALRWEDMQKEGNDKFRLQIIQRKTKEAIYLPLSEEAIKYLPARENENDRLGLIFHL 290

Query: 262 QKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
             +         K     AG+     + H  R   AT+S   G   + +    G K +  
Sbjct: 291 PSLTI--ICQVLKGWTLAAGIKNKKVTFHVSRHTFATLSLALGIDLYTVCKLLGHKNIIS 348

Query: 319 AETYTKGADRIRLGIKNSRRISSVVDS 345
            + Y K  D  +   +   R + V+D+
Sbjct: 349 TQVYAKIIDASKR--QAIDRFNGVLDA 373


>gi|299136538|ref|ZP_07029721.1| integrase family protein [Acidobacterium sp. MP5ACTX8]
 gi|298601053|gb|EFI57208.1| integrase family protein [Acidobacterium sp. MP5ACTX8]
          Length = 381

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 53/365 (14%), Positives = 112/365 (30%), Gaps = 42/365 (11%)

Query: 11  VTKERTRHGKIIYYFRKGH----GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
           V +   ++G  ++ FR       GRR+       +    A  +A+  +T    Y  + R 
Sbjct: 6   VIQMTRKNGPGVWQFRWSDKDLNGRRVYHRQVIGTIDQYADEAAVRHATLPLIYEVNSRS 65

Query: 67  -----KPTTLKWLISEYRKSAHWGS----LAVNSRISFESYFDQIIR-KSGDFDYRKITT 116
                   T+  L   + +   + S     +V +  ++  Y  + IR + G     +I  
Sbjct: 66  PHDHVGAITVDQLCEHFEQ-WEFRSSISLRSVATIKTYRGYIRRWIRPQWGSRKLDEIKA 124

Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
             + + + S      S  +  + + +LF  A R E    NP   V +  ++       T 
Sbjct: 125 TDVEAWLRSLNLARGSRSKLRSILSILFNHACRHELFDHNPIRFVRQGAKRLHTPDVLTG 184

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------- 229
            +++          + R        +GLR  +      + +      +   ++       
Sbjct: 185 SEIKLLVESLPL--RERTLVLLAASTGLRQGEIFGLKWRDVDFEHGELNVIRSMVCGVVG 242

Query: 230 -----GTIITVELPDGFMKLLAMT------PIGKETFFI----NNDKQKMNATQFSIWFK 274
                 +   V L       L             +  F     N  K          + +
Sbjct: 243 ACKTESSQRPVPLHHRLAAALLAWRPNCNFKTQDDWVFASRLHNGRKPYWGPVILRKYIQ 302

Query: 275 AKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRL 331
             A K G++K    H  R+  AT+    G     +       ++    + YT+     + 
Sbjct: 303 PAAQKLGIHKQIGWHTFRRTYATLLRSLGVEFKVMQELMRHSSLRTTLDVYTQAVGPAKR 362

Query: 332 GIKNS 336
             + +
Sbjct: 363 AAQAA 367


>gi|308177312|ref|YP_003916718.1| tyrosine recombinase subunit XerC [Arthrobacter arilaitensis Re117]
 gi|307744775|emb|CBT75747.1| tyrosine recombinase subunit XerC [Arthrobacter arilaitensis Re117]
          Length = 334

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 43/293 (14%), Positives = 100/293 (34%), Gaps = 49/293 (16%)

Query: 85  GSLAVNSRISFESYFDQI----IRKSGDFDYRKITTKHIRSGVESRKHT---PSSAIQFL 137
              + N+  +++     +       +GD   ++I+ + +R  +     +    ++  + +
Sbjct: 34  RGRSENTLRAYDVDLRNLGQFLNEHAGDPALKQISVQMLRDWLAYLHESEVSRTTLARRI 93

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS------- 190
           ++++  F WA++   V  +P L +  PK++           + +  S  +  +       
Sbjct: 94  SAVKNFFAWALKNHLVENDPALRLAAPKKERRLPHILQPSQIDRLLSEHAGLTEENEAAR 153

Query: 191 -----------------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--- 230
                            + R+  E L  SGLR S+     +  +     +++    G   
Sbjct: 154 QKGDGTDQDPKARAIQCRDRVIAELLYASGLRISELVALDISDIDFERRTLRVLGKGNKE 213

Query: 231 ---------TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281
                      + +E    + +++A          +     ++N  Q      +     G
Sbjct: 214 RMVPFGKPAERVIIEWIRSYRRVVAAEQAED-ALLVGVRGSRLNVRQAREVIASALRSLG 272

Query: 282 VNKSA---HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330
            + SA   H +R   AT   D GA    +    G  ++   + YT    DR+R
Sbjct: 273 -DTSASGPHALRHTVATHLLDGGADLRAVQEFLGHASLATTQLYTHVSVDRLR 324


>gi|317055389|ref|YP_004103856.1| integrase family protein [Ruminococcus albus 7]
 gi|315447658|gb|ADU21222.1| integrase family protein [Ruminococcus albus 7]
          Length = 393

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 59/321 (18%), Positives = 111/321 (34%), Gaps = 53/321 (16%)

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRS 121
           +      + L  E+ ++    +L   +   +E       ++    G     KIT +H++ 
Sbjct: 63  KTSAMKFQELAEEWFENYAKNALRSTT---YERMLQLTHRVYPAIGHLRIDKITARHLQG 119

Query: 122 GVESRKH-----------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170
            V S               P +    L+ +  +F +AVR + V+ NPC  V  PK + + 
Sbjct: 120 FVNSLAKEGANEKTGKPLAPKTIRHNLSFISDVFSYAVRMDLVSDNPCRKVTIPKGEVKE 179

Query: 171 IRPWTKEDMQQFK-SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK-- 225
              +++E++ Q   +   E ++ R  F  + YSG R S+      + +   NNI SIK  
Sbjct: 180 KPIYSQEEIAQLLTAINGEDTKYRAFFYLIAYSGFRRSEMLGLEWKDIDFENNIISIKRT 239

Query: 226 ------------TQKTG-TIITVELPDGFMKLLAMTP--------------IGKETFFIN 258
                       T KT  +   +++    M +L                  +  +  F+ 
Sbjct: 240 SNYTAERGIYTDTTKTKRSKRVLKISPYIMNILKELKDEQDEEALRLGDKWVESDRLFVK 299

Query: 259 NDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGW-KTV 316
            + + MN      W K    K  +     H  R F+A+    +G     +    G   + 
Sbjct: 300 WNGEPMNNQTPYGWLKEFCEKNDMPFYGIHSFRHFAASALISSGLDVVTVSGALGHCNSG 359

Query: 317 DQAETYTKGAD--RIRLGIKN 335
                Y       + R+    
Sbjct: 360 TTLNVYAHMFQTAQARVAQAM 380


>gi|262067785|ref|ZP_06027397.1| site-specific recombinase, phage integrase family [Fusobacterium
           periodonticum ATCC 33693]
 gi|291378508|gb|EFE86026.1| site-specific recombinase, phage integrase family [Fusobacterium
           periodonticum ATCC 33693]
          Length = 360

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 61/359 (16%), Positives = 127/359 (35%), Gaps = 38/359 (10%)

Query: 6   RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSA-----LTGSTPKREY 60
           R  P++ ++  R  +       G   R+ L           Y  A     L         
Sbjct: 17  RRKPWLLRDNKRFNEE-----TGKFERLVLGVFETKKEAETYRIAYFTNNLDMLEKTDIK 71

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
           I+  ++K  T + + + + K+     +   +  ++E+ F +  +K    +  KI    ++
Sbjct: 72  IHKKKEKGITFEQVYNLWLKN---KDVNDGTLTNYETQFKR-SKKLHKMEINKINGILLQ 127

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL-----SVERPKRKTEGIRPWT 175
               S   T S+     +   ++F +A+  +  + N        +VE+ K+ ++  R  T
Sbjct: 128 DIFYSLNLTNSTLRVLKSFWSMIFDFAILNDMCSKNYAKYLKTKTVEKGKKTSDRERVIT 187

Query: 176 KEDMQQFKSFWSEGSQPR----LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
           +E++Q      S     +         L Y+GLR S+  R   + +  N +  + +K+ +
Sbjct: 188 QEELQVLWDNISNNETNKHGIIDMVLILCYTGLRISELLRVKRKDVYLNEYYFEVEKSKS 247

Query: 232 II---TVELPDGFMKLLAMT-PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSA 286
                 V + D  + L         +  +   D  + +   F   F+      G++  S 
Sbjct: 248 KAGVRKVPIADKILDLFRARYFSKDKYLWQRLDGLEYDYDSFDNHFRILFRDLGLSYHSL 307

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGIKNSRRISSVVD 344
           H  R   A++ +D  A    ++   G          Y           K  +R+  VVD
Sbjct: 308 HDTRHTFASLLSDNVADKDAIIKIIGHSNYKTTSDVYIH---------KEIKRLKKVVD 357


>gi|238650850|ref|YP_002916705.1| site-specific tyrosine recombinase XerC [Rickettsia peacockii str.
           Rustic]
 gi|259710438|sp|C4K256|XERC_RICPU RecName: Full=Tyrosine recombinase xerC
 gi|238624948|gb|ACR47654.1| site-specific tyrosine recombinase XerC [Rickettsia peacockii str.
           Rustic]
          Length = 305

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 47/284 (16%), Positives = 107/284 (37%), Gaps = 28/284 (9%)

Query: 69  TTLKWLISEYRKSAHWG-SLAVNSRISFESYFDQIIR-----KSGDFDYRKITTKHIRSG 122
           T+++ LI++++K      + + ++ IS+ +     +       S       I T  IR  
Sbjct: 4   TSIQALINKWQKYLVLQRNYSNHTVISYNNDLKHFLEFMNYYNSELVTINHIKTADIRLI 63

Query: 123 VESRKH------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
                       T SS  + L++++  +++  +   +  +   S++ PK+     +  ++
Sbjct: 64  RSWLAKRNCDNFTASSISRGLSAVKNFYRFLEKTTQLNSHIIFSIKSPKKTKLLPKALSE 123

Query: 177 ED-------MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229
           +D       ++++ +      + +     +  SGLR S++      HLQN  F     K 
Sbjct: 124 DDVVISLEHIEEYGNVKWVELRNKALLVLIYASGLRISEALSITKLHLQNLEFIRIIGKG 183

Query: 230 GTIITVELPD-------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
                +            ++++L       E  F     +++  + F+          G+
Sbjct: 184 SKERIIPWLPIAKNLITQYLEILPYKLGDNEPIFRGKQGKELQPSVFNRELIKLKHFYGL 243

Query: 283 --NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             + +AH  R   A+   + GA    L    G K++   + YTK
Sbjct: 244 PQHLTAHSFRHSFASHLLEHGADLRSLQELLGHKSLSTTQNYTK 287


>gi|319781237|ref|YP_004140713.1| tyrosine recombinase XerD [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317167125|gb|ADV10663.1| tyrosine recombinase XerD [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 305

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 43/281 (15%), Positives = 92/281 (32%), Gaps = 31/281 (11%)

Query: 75  ISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT--KHIRSGVESRKHTPS 131
           I  + +  +     A N+  S+    +                  +     + +R    +
Sbjct: 7   IEAFLEMMSAERGAAENTLSSYRRDLEDASGAIDGGLAGAAAADIRAYLDDIAARGFAAT 66

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS- 190
           S  + L+++R  FK+   +     +P  +++ PK+     +  ++ D  +     +  + 
Sbjct: 67  SQARKLSAIRQFFKFLYAEGLRGDDPTGTLDSPKKGRPLPKTMSEADTGRLIDRAAIEAG 126

Query: 191 -------------QPRLAFEFLLYSGLRCSDSCRAGVQ-HLQNNIFSIKTQKTGTIITVE 236
                        +     E L  +GLR S+     V    +++ F +   K      V 
Sbjct: 127 DVSSGDGDSLASLRLHALVEVLYATGLRVSELVGLPVTVAQRDDRFFMVRGKGDKERMVP 186

Query: 237 LPDGFMKLL-------AMTPIGKETFFIN---NDKQKMNATQFSIWFKAKATKAGV---N 283
           L       +       A  P   ++ F+    +D   ++   F+   K  A +AG+    
Sbjct: 187 LSAKARAAMKTWLAARAKVPAFADSPFLFPAASDSGYLSRQVFARDLKGLAARAGIASAK 246

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            S H +R   A+     GA    +    G   +   + YT 
Sbjct: 247 ISPHVLRHAFASHLLQNGADLRAVQQLLGHADISTTQIYTH 287


>gi|229096643|ref|ZP_04227614.1| Integrase/recombinase [Bacillus cereus Rock3-29]
 gi|228686849|gb|EEL40756.1| Integrase/recombinase [Bacillus cereus Rock3-29]
          Length = 305

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 41/283 (14%), Positives = 97/283 (34%), Gaps = 29/283 (10%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFD----QIIRKSGDFDYRKITTKHIRSGV--- 123
           L+++I +Y +      LA  +  S+    +     +  +    +   IT + I+S +   
Sbjct: 4   LRFMIKDYLEDKELSGLAPRTIQSYGDTLNEFSLWLTTEKEIINIEDITPQVIKSYLLYC 63

Query: 124 -ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPWTKEDMQ 180
            + R +   +    L  ++  F++   ++ +    NP   ++ P +  + I+ ++ E ++
Sbjct: 64  SKERGNAVVTRNGKLQHLKTFFRYLEDEDVIEIRSNPTNKIK-PAKTDKTIKVYSDEQIK 122

Query: 181 QFKSFWS-----EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTG 230
           Q   ++      E +    +       L  +G+R  +        +     +I    K  
Sbjct: 123 QMLRYYRRMRSRENTLYSYRGHTVIVVLAGTGIRLGELVSMRWDSVDLLNKTITIFGKNR 182

Query: 231 TIITVELPDGFMKLLAMTPIGKE--------TFFINNDKQKMNATQFSIWFKAKATKAGV 282
             ++  L D   + L    +  E          F ++    +      + F   + + G 
Sbjct: 183 KSLSTPLTDKVARELYEWRLFCEKYYIKLPAHVFNDHRGNPLTVNAVKLMFTRLSVRMGF 242

Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
             +AH  R   A+    AG   + L        +   E Y   
Sbjct: 243 KTTAHMFRHTYASNCLRAGMDIYTLSKLMHHSQIRTTEVYLHA 285


>gi|254510200|ref|ZP_05122267.1| phage integrase [Rhodobacteraceae bacterium KLH11]
 gi|221533911|gb|EEE36899.1| phage integrase [Rhodobacteraceae bacterium KLH11]
          Length = 295

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 45/264 (17%), Positives = 83/264 (31%), Gaps = 15/264 (5%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD--YRKITTKHIRSGVESRKHTPS 131
           L     +      L   S+ S            G           +  +  +     TPS
Sbjct: 9   LRERMIEDMRIRGLGDKSQQSHIRAVKDFAAFLGRSPDTVTTEELRVYQLHMTDAGVTPS 68

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-EGS 190
                +T++R  F     +E +       ++   +  +     + E++ +  +     G 
Sbjct: 69  VYNARITALRFFFSMTCGREEMKR----YMQFRTQPRKLPAVLSAEEVSELLAVAPGPGL 124

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLLA-- 246
           + R A      +GLR S+ C      + ++     +   K      V L    + LL   
Sbjct: 125 KYRAALSISYGAGLRASEVCNLTTGDIDSDRMLIHVVQGKGRKDRKVMLSPDLLDLLRDY 184

Query: 247 -MTPIGKETFFINNDK-QKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302
                 +   F    K   ++  Q +  F +    AG+NK  + H +R   AT   +AG 
Sbjct: 185 WCEARPEGWLFPGKPKINPISPRQLNRAFTSAKRMAGINKPATLHTLRHSFATHLLEAGT 244

Query: 303 TAHELMATYGWKTVDQAETYTKGA 326
               +    G   +     YTK A
Sbjct: 245 DVRVIQVLLGHAKLTITAQYTKVA 268


>gi|167462395|ref|ZP_02327484.1| DNA integration/recombination/invertion protein [Paenibacillus
           larvae subsp. larvae BRL-230010]
 gi|322383376|ref|ZP_08057161.1| phage integrase-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321152335|gb|EFX45156.1| phage integrase-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 413

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 41/310 (13%), Positives = 105/310 (33%), Gaps = 51/310 (16%)

Query: 86  SLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR------------KHTPSS 132
           +L+  +  ++  + + +I+   G  +   I T HI + +               K +P +
Sbjct: 95  NLSPLTYQTYMHFIENRIMPVFGHKNLEDIRTLHIVTFINDLSKPEARKDGKSGKLSPGT 154

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM-QQFKSFWSEGSQ 191
                  ++ +F  A   + +  NP + V++PK +      + +++  +   +   E  +
Sbjct: 155 IQYIHRVLKNIFNRATEWQLIKTNPIVGVKKPKVEQTEFDFYDEDEAREAIAALSKEPRR 214

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK-----------------TGTIIT 234
            RL     +  G R  +       ++  +  ++   K                   +   
Sbjct: 215 WRLLILGSMVGGFRRGELLALEWSNVDFDNMTLSINKSISLTKDGRAVEKAPKSKSSKRI 274

Query: 235 VELPDGFMKLLAM----------------TPIGKETFFINNDKQKMNATQFSIWFKAKAT 278
           V++PD +M  L +                    ++  F     +  + T  + W+     
Sbjct: 275 VDMPDWYMDELKVHEYEWKKEKLSVGDKWRGGDRQYVFHAGFGKPFHHTYPTEWWNGFTK 334

Query: 279 KAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKT-VDQAETYTKGADRIRLGIKNS 336
           +  + +   H +R  SAT+  +AGA+   +    G       A+ Y       ++    +
Sbjct: 335 RHNLKRVRFHDLRHSSATLLIEAGASMKAVQQRLGHSKHQTTADIYAHVT--KKVSRDTA 392

Query: 337 RRISSVVDSD 346
            + +    ++
Sbjct: 393 EKFNKFAPNN 402


>gi|240948188|ref|ZP_04752588.1| phage integrase family protein [Actinobacillus minor NM305]
 gi|240297481|gb|EER47995.1| phage integrase family protein [Actinobacillus minor NM305]
          Length = 420

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 51/254 (20%), Positives = 100/254 (39%), Gaps = 20/254 (7%)

Query: 95  FESYFDQIIRKSGDFDYRKITTKHIRSGVES-----RKHTPSSAIQFLTSMRVLFKWAVR 149
           F  Y +  I K    D + +    I+S + S     R  +P++  + +  ++ +  +A R
Sbjct: 157 FRLYIEPYIGKVIYSDLKALQIYQIQSDMISGNHYPRAFSPATCNRTIALLKTMGNFAYR 216

Query: 150 QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ--FKSFWSEGSQPRLAFEFLLYSGLRCS 207
            EY++ N  L V   K   +  R ++ E+M+   + + +            LL +G R +
Sbjct: 217 LEYISENVALKVPLLKENNQRSRYFSLEEMKALLYHAEFYPNKYAGSLIALLLLTGARRN 276

Query: 208 DSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT--PIGKETFFINNDK-Q 262
           +  +A  +   +   I  +   K G    + L D  M  L      +G    F      +
Sbjct: 277 ELQQAKWEYLDVNAQILYVPNTKNGKPREIYLSDEAMYWLNRLERDVGNPYIFARKGSVK 336

Query: 263 KMNATQFSIWFKAKATKAGV----NKSAHGVRKFSATISADAGA-TAHELMATYGWKTVD 317
            ++A +F+   K    KAG+        H  R   AT+   +G    +++ A     ++ 
Sbjct: 337 PISAPRFA--LKQLLKKAGITDIDGICFHTARHSVATLLISSGKFNLYDVKAQLAHASIQ 394

Query: 318 QAETYTK-GADRIR 330
            ++ Y K   +R R
Sbjct: 395 SSQRYAKLTENRQR 408


>gi|229175638|ref|ZP_04303146.1| Integrase [Bacillus cereus MM3]
 gi|228607779|gb|EEK65093.1| Integrase [Bacillus cereus MM3]
          Length = 330

 Score =  103 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 47/268 (17%), Positives = 87/268 (32%), Gaps = 25/268 (9%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
            WL   Y        L   +   F +Y + +  K     Y                 T  
Sbjct: 46  DWLFDNYEIEY----LEELTTEMFRNYINYM--KYDKKRYEGHKFIDSDKQGIGLCDT-- 97

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FWS 187
           +    + ++R L  +  R+E + +NP   ++  ++  +    +  E++++          
Sbjct: 98  TININIRTLRALINYLYREELIEVNPIEKIKLLRQDIDLTNSFNDEEIKEILRQPNLRDF 157

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKT--QKTGTIITVELPDGFMK 243
            G +  +    LL SGLR  +     V  +       +I+    K      V +     K
Sbjct: 158 VGFRDFVGINVLLDSGLRIQELMGLRVSDIDFQTRFITIQANKSKNRKPRLVPVSTHVTK 217

Query: 244 LLAMTPIGKET------FFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSA 294
           +L       +        F+++  + + A  F+   K  A KAG+     +AH  R   A
Sbjct: 218 VLLQLINENQAHFKTDRVFLSSYGEPLGANHFNKRLKYYAEKAGIKDKKVTAHVYRHTWA 277

Query: 295 TISADAGATAHELMATYGWKTVDQAETY 322
                 G  A  L    GW  +     Y
Sbjct: 278 KNMILNGCDAFTLQKIGGWSDIRTMRRY 305


>gi|38234089|ref|NP_939856.1| site-specific tyrosine recombinase XerC [Corynebacterium
           diphtheriae NCTC 13129]
 gi|38200351|emb|CAE50037.1| Putative integrase/recombinase [Corynebacterium diphtheriae]
          Length = 302

 Score =  103 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 45/293 (15%), Positives = 99/293 (33%), Gaps = 24/293 (8%)

Query: 68  PTTLKWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFD-YRKITTKHIRSGVES 125
           P  L  L+ ++ +    G   +  +  S++S     + +    D +     +   +   +
Sbjct: 2   PAQLTELVDDFCEYLDLGLGRSPATVRSYKSDLFGFVNRFATLDQFTLDNVREWLAQAVA 61

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
              + ++  +   S++    W +R  Y  I+    +  PK +       ++  M      
Sbjct: 62  DGKSRATIARRTASIKAFSGWLLRNGYNDIDVAARLVAPKVQRTLPMVVSERTMTNIVEK 121

Query: 186 WSEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPD 239
            +  +     + R   E L  SG+R S+ C      +     + +    G     V   D
Sbjct: 122 PASTTEDTFVRDRAICELLYASGIRVSELCGLNTGDVDLKRQTARVTGKGNKQRVVPFGD 181

Query: 240 GFMKLL--------------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284
                L              A    G +  F+    ++++  Q     +    + G+   
Sbjct: 182 QATAALSHWLNGVRSEMLISAGCTSGVDALFVGVRGKRIDPRQVRRIVETSGQEHGIGGL 241

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNS 336
           + H +R  +AT   D GA    +    G  +++  + YT     R++   KN+
Sbjct: 242 APHALRHTAATHLLDNGADLRVVQEMLGHSSLNTTQIYTHVSTQRLKEAYKNA 294


>gi|114561634|ref|YP_749147.1| tyrosine recombinase XerC [Shewanella frigidimarina NCIMB 400]
 gi|114332927|gb|ABI70309.1| tyrosine recombinase XerC [Shewanella frigidimarina NCIMB 400]
          Length = 299

 Score =  103 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 36/285 (12%), Positives = 95/285 (33%), Gaps = 22/285 (7%)

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISF----ESYFDQIIRKSGDFDYRKITTKHIRSG 122
           KPT  + + S++  S     L+  +  ++        D +   +   +  +   + + + 
Sbjct: 2   KPTDWQTIFSQHLSSER--QLSAYTVRNYLFELRRVEDMLAESTQLIEVSRDQLQSVMAT 59

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           +  +  +P S    L++++  F + +R+  V ++P  ++  PK+     +    + +   
Sbjct: 60  LHRKGLSPRSLSLCLSALKQFFDFLLREGAVTVSPAQTLSAPKQNKPLPKNMDVDAVSHL 119

Query: 183 KSF---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELP 238
            S         + +   E    SGLR ++        ++ +   +K    G+    V + 
Sbjct: 120 LSIEGDDPLSLRDKAIMELFYSSGLRLAELASLDCVDIKFDQSEVKVMGKGSKQRVVPIG 179

Query: 239 DGFMKLLAMTPI---------GKETFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSAH 287
              +  +                +  F+++  ++++                  V    H
Sbjct: 180 QVALTAIKTWLNCRNQLSCVEAGDALFVSSQGKRLSHRSIQARMAKWGQEQAMAVKVHPH 239

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
            +R   AT   ++      +    G   +   + YT   D   L 
Sbjct: 240 KLRHSFATHMLESSQDLRAVQELLGHANLSTTQIYT-SLDFQHLA 283


>gi|253699447|ref|YP_003020636.1| integrase family protein [Geobacter sp. M21]
 gi|251774297|gb|ACT16878.1| integrase family protein [Geobacter sp. M21]
          Length = 433

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 50/305 (16%), Positives = 100/305 (32%), Gaps = 38/305 (12%)

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITT 116
           +E      +K  T+K L  +Y       +   +S    E  F   +  + G      I  
Sbjct: 90  KEEEQEQHRKALTVKQLFDDYLVRHAKLNKRESSWREDERLFKVNVEPEWGKRKAEHIKK 149

Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
           +     ++     P+     +   R LF +AV ++ +   P   V+ P       R  T 
Sbjct: 150 RDCIELLDKYADRPALCHNVMKLTRKLFNFAVEKDILEHTPFTGVKVPVELESRERILTD 209

Query: 177 EDMQQF-KSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ--KTG 230
            ++++  ++   + +   + +   + LL +G R  + C   V  +  N ++I  +  K G
Sbjct: 210 TEIKKLWRTELPKAAISDEVKQIIKLLLLTGQRVGEVCGITVNEVDGNWWTIPQERSKNG 269

Query: 231 TIITVELPDGFMKLLAMTPIG----KETFFINNDKQKMNA--------TQFSIWFKAKAT 278
               V L D  +KLL  +  G          ++D + +                 K    
Sbjct: 270 QTHRVYLTDTAIKLLGKSINGYYFPSPVVKNDSDGKPVFKHIDENAVAYAIRKNLKDYQP 329

Query: 279 KAGVNK-------------------SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
           +  +                     + H +R+  +T  A  G     + A  G K     
Sbjct: 330 RRPIKGDRISMVQVPEEKKMSIAHFTPHDLRRTFSTSLAKLGFNDEIIDAVMGHKKQGVI 389

Query: 320 ETYTK 324
           + Y +
Sbjct: 390 KIYNR 394


>gi|56552826|ref|YP_163665.1| integrase family protein [Zymomonas mobilis subsp. mobilis ZM4]
 gi|56544400|gb|AAV90554.1| integrase family protein [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 399

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 54/322 (16%), Positives = 107/322 (33%), Gaps = 31/322 (9%)

Query: 45  PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-II 103
             +++ +          N+ RK P T+K     + +         +++  ++   D+ II
Sbjct: 75  QEWLAEVRKGGDPSAAKNAARKAP-TMKEFCHTFIEDYSKQRNKPSTQRGYQGVIDRCII 133

Query: 104 RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA--INPCLSV 161
              G    + +    + + ++   +  + A +    +R +F  A          NPC  V
Sbjct: 134 PIMGRMKVQDVKRPDVAALMKKLAYKQAEANRTFGVLRKMFNLAEVWGLRPDGTNPCRHV 193

Query: 162 ERPKRKTEGIRPWTKEDM----QQFKSFWSEGSQPR---LAFEFLLYSGLRCSDSCRAGV 214
                  +  R    +++    +Q +   + G +     LA         R S+ C    
Sbjct: 194 PM-YPPGKETRLIVDDELVRIFRQLEHLEAVGLENYVIPLAIRLQFEFAARRSEICPLEW 252

Query: 215 QHLQNN--IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI----NNDKQKMN-AT 267
             +            KTG  I+  + +   +LL+  P  +   ++    N+  Q M    
Sbjct: 253 DWIDLEKRRVVWPDSKTGG-ISKPMSEEAYRLLSTAPRREGCPYVLPSPNDPTQHMTHGE 311

Query: 268 QFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
            +  W +        +   HG+R  + T  A++G      M   G KTV     Y    D
Sbjct: 312 HYGGWTRVLKAAGVPHVGTHGIRHRATTDIANSGVPTKVGMKLTGHKTVAMFMHYVHTED 371

Query: 328 R-----------IRLGIKNSRR 338
           +            RL I  + R
Sbjct: 372 KPVRDAAELVANRRLAITGASR 393


>gi|18310790|ref|NP_562724.1| tyrosine recombinase XerD [Clostridium perfringens str. 13]
 gi|110799101|ref|YP_696492.1| tyrosine recombinase XerD [Clostridium perfringens ATCC 13124]
 gi|168206137|ref|ZP_02632142.1| tyrosine recombinase XerD [Clostridium perfringens E str. JGS1987]
 gi|168210828|ref|ZP_02636453.1| tyrosine recombinase XerD [Clostridium perfringens B str. ATCC
           3626]
 gi|168214383|ref|ZP_02640008.1| tyrosine recombinase XerD [Clostridium perfringens CPE str. F4969]
 gi|168215437|ref|ZP_02641062.1| tyrosine recombinase XerD [Clostridium perfringens NCTC 8239]
 gi|169343727|ref|ZP_02864726.1| tyrosine recombinase XerD [Clostridium perfringens C str. JGS1495]
 gi|182625652|ref|ZP_02953421.1| tyrosine recombinase XerD [Clostridium perfringens D str. JGS1721]
 gi|18145471|dbj|BAB81514.1| probable integrase/recombinase [Clostridium perfringens str. 13]
 gi|110673748|gb|ABG82735.1| tyrosine recombinase XerD [Clostridium perfringens ATCC 13124]
 gi|169298287|gb|EDS80377.1| tyrosine recombinase XerD [Clostridium perfringens C str. JGS1495]
 gi|170662459|gb|EDT15142.1| tyrosine recombinase XerD [Clostridium perfringens E str. JGS1987]
 gi|170711119|gb|EDT23301.1| tyrosine recombinase XerD [Clostridium perfringens B str. ATCC
           3626]
 gi|170714149|gb|EDT26331.1| tyrosine recombinase XerD [Clostridium perfringens CPE str. F4969]
 gi|177909054|gb|EDT71529.1| tyrosine recombinase XerD [Clostridium perfringens D str. JGS1721]
 gi|182382078|gb|EDT79557.1| tyrosine recombinase XerD [Clostridium perfringens NCTC 8239]
          Length = 290

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 39/269 (14%), Positives = 96/269 (35%), Gaps = 18/269 (6%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISF----ESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127
           K L+S+Y           N+  ++      Y D +  K                 ++   
Sbjct: 2   KDLVSKYEVYLESIGKRKNTVSAYITDVSMYLDFVEEKGFKVSEDSYPLISYVQHLKESH 61

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS--- 184
            +PSS  + + S+R  + + V +E++   P L++++ + + +     T E++ +  +   
Sbjct: 62  KSPSSIQRTIISLRNFYNFLVAEEFLKKVPNLTMKKERVEKKKPLVLTVEEINKIMNSTN 121

Query: 185 -FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242
               +G + +   E +  +G++ S+     ++ +  +   +  + + G    + +     
Sbjct: 122 VLTEKGIRDKALLELMYATGMKVSELISLRIEDINLDSSFVNCRDSRGYERLIPIGKAAK 181

Query: 243 KLLAMTPI-------GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFS 293
           + L    +       G +  F+N   + +         K  A  A + K    +  R   
Sbjct: 182 ESLKRYIVVREDNSKGSDKLFLNMSGEPITRQGVWRIVKEYAVIANIGKDINLNTFRHSF 241

Query: 294 ATISADAGATAHELMATYGWKTVDQAETY 322
           A      GA A  +    G + +   + Y
Sbjct: 242 AVHLLQNGANAKVVQELLGNQVMTYIDMY 270


>gi|85058907|ref|YP_454609.1| phage integrase [Sodalis glossinidius str. 'morsitans']
 gi|84779427|dbj|BAE74204.1| phage integrase [Sodalis glossinidius str. 'morsitans']
          Length = 355

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 55/338 (16%), Positives = 110/338 (32%), Gaps = 28/338 (8%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMS--ALTGSTPKREYINS- 63
           LPP +      +G    Y     G+   L          A  +  A+ GS+ +   ++  
Sbjct: 12  LPPNLQ---PINGGYFCYRDPRTGKEYGLGRNRREAITQAIAANMAIYGSSKQSPLVDRI 68

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
              + TT+    + Y        L   +      Y   I    G+F  +++ TK + + +
Sbjct: 69  SGTQATTVSEWTTRYLTILEGRKLKPKTMTEHRKYLKAINEHLGEFAIQQVQTKDVAAFL 128

Query: 124 ES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
               +    + A +    +  LF+ A+    V+ NP  +    + + +  R  T E+ + 
Sbjct: 129 NLWVKAGKETMANKLRKEVIDLFREAIADGIVSHNPAEATRNQRVEIQRERI-TLEEWKV 187

Query: 182 FKSFW-SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE---- 236
            +       +      +  L +G R  D      ++ ++    IK  KTG ++       
Sbjct: 188 IRKIAEKLPAWVGSCLDLALVTGQRLGDIQALLWENFKDGRLYIKQAKTGMMLAFSAVTR 247

Query: 237 -------LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK----- 284
                  L D   +  A+   G      ++  ++  A   S  F      +G+       
Sbjct: 248 IDCLNLCLADVLSQFKALNSTG-SHIVADSKHEQFAAKTISAAFLKARRVSGLTWQGDPP 306

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           S H +R   A                 G K+ +  + Y
Sbjct: 307 SFHEIR-SLAARLYTDEKGRDYAQKLLGHKSSEMTDKY 343


>gi|326803545|ref|YP_004321363.1| phage integrase, N-terminal SAM domain protein [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326651486|gb|AEA01669.1| phage integrase, N-terminal SAM domain protein [Aerococcus urinae
           ACS-120-V-Col10a]
          Length = 309

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 46/275 (16%), Positives = 93/275 (33%), Gaps = 28/275 (10%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGV---ESRK 127
           + EY K       +  +  ++ S FD  I    D     D+ +++ + IR  +   + + 
Sbjct: 10  LKEYIK--DEKHYSDQTLKAYLSDFDDFISFLRDELLISDFEQLSYRDIRLYLSHLQRKG 67

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            +  S  + L+S+R  F   + Q  V  NP   V+  K        + + ++        
Sbjct: 68  LSRKSLARHLSSLRTAFNRFLDQGLVKDNPFTYVQAAKTGLRLPDFFYEAELDPLFEAAK 127

Query: 188 EGSQPR-----LAFEFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGTIITVE----L 237
            G +          EFL  +G R S+     +  +   N  ++   K      V      
Sbjct: 128 -GPRALDKRNIALLEFLYATGARVSECTNLTITQVDLKNSIALLHGKGSKDRYVPFGSYC 186

Query: 238 PDGFMKLLAMTPI------GKETFFINNDKQKMNATQFSIWFKA--KATKAGVNKSAHGV 289
                + L             E  F+N+  + +  +  +       K + + ++   H +
Sbjct: 187 KKALEEYLDSGRPVLLKGHDHEYIFVNSRGEALTPSGVTYILNDLVKKSASNLDIHPHKL 246

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           R   AT   + GA    +    G  ++   + YT 
Sbjct: 247 RHSFATHLLNHGADIRTVQELLGHSSLSSTQIYTH 281


>gi|224372317|ref|YP_002606689.1| phage integrase [Nautilia profundicola AmH]
 gi|223589124|gb|ACM92860.1| phage integrase [Nautilia profundicola AmH]
          Length = 269

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 37/246 (15%), Positives = 95/246 (38%), Gaps = 10/246 (4%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWA 147
           + N+  ++E+  ++ I      +     T +     E  K T +   + ++++R  F++ 
Sbjct: 21  SHNTYKTYETVLNEAINFIEIENNIINITPYRLHIAELNKKTIA---KKVSALRSFFEFL 77

Query: 148 VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCS 207
             + +      +  E  K      +P + E +++  +  S      LA   +   GLR S
Sbjct: 78  ETEGHKFK--IIGDEHIKVPKTLPKPVSMEHIKK--ALKSATMDEYLAIITIFSLGLRIS 133

Query: 208 DSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL--AMTPIGKETFFINNDKQKMN 265
           ++    +  ++ +   I+  K      + +       +   +    K+ +    +   + 
Sbjct: 134 EAAGITLSDIKGDWIEIR-GKGAKTRLLPVHPKLKDFINKYLEIHPKKEYLFEKEGVPLG 192

Query: 266 ATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           A +     +    K G++ + H +R   AT     GA  +++    G + +   + YTK 
Sbjct: 193 ADKIRYLIQRAFKKHGIHVTPHQLRHSFATYMLQNGARINDVSELLGHEFISTTQIYTKL 252

Query: 326 ADRIRL 331
           ++ ++L
Sbjct: 253 SNSLKL 258


>gi|319426956|gb|ADV55030.1| integrase family protein [Shewanella putrefaciens 200]
          Length = 324

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 34/233 (14%), Positives = 77/233 (33%), Gaps = 20/233 (8%)

Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW-TK 176
           H R  ++ +          +T ++   +    +  ++ N    +E P       +   + 
Sbjct: 69  HYRKLLDHQPLGQQQKRNLVTYIKTFVQCMYSKGLLSANTLAGIELPHSGRALPKALFSV 128

Query: 177 EDMQQFKS----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTG 230
            ++++  +    F   G + R   E    +G+R S+     +  +     +  +   K  
Sbjct: 129 TEIEKILAQSLLFGVHGLRDRAILEVFFATGIRRSELMMLDIDDIDFTAKLLRVNHGKGQ 188

Query: 231 TIITVELPDGFMKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280
               V + +   + L                    F+ N+  ++ A Q S         +
Sbjct: 189 KERIVPMSERACEWLVFYLSKLRPMISFIGSGGALFLANNGTRLRANQLSEMAGRYVRLS 248

Query: 281 GVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           G+ ++   H  R  +AT   D GA    +    G  ++   + YT    R +L
Sbjct: 249 GIKRTGACHLFRHATATTMLDNGAELRHVQEMLGHASILTTQIYTH-VSRAKL 300


>gi|326335714|ref|ZP_08201900.1| site-specific tyrosine recombinase XerC [Capnocytophaga sp. oral
           taxon 338 str. F0234]
 gi|325692143|gb|EGD34096.1| site-specific tyrosine recombinase XerC [Capnocytophaga sp. oral
           taxon 338 str. F0234]
          Length = 296

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 44/275 (16%), Positives = 99/275 (36%), Gaps = 23/275 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQ----IIRKSGDFDYRKITTKHIRSGVESR-- 126
           +I  +          + ++  ++ +  ++    +  +    +  K+    IRS +     
Sbjct: 1   MIDAFENYLRLEKKYSPHTVTAYLTDVEEFAAFLKEEDPTVELSKVNYPLIRSWIIHLVE 60

Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
            K T  S  + + S++  + + VR   +   P       K + +   P+++++++   S 
Sbjct: 61  SKITNRSINRKIASLKAYYAFLVRSLAIKSTPFQQHIPLKTQKKLSIPFSEKEIEDVLSI 120

Query: 186 WSEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELP- 238
            +E       + R+  E    +G+R S+     +  +  +  +IK   K      + L  
Sbjct: 121 PTEEDSYTSLRNRMIIELFYATGIRRSELIELKINDIDLSQKTIKVLGKRNKERIIPLIH 180

Query: 239 ---DGFMKLLAMTP---IGKETFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSAHGVR 290
              +   K L +       +E  F+ N+ +KM          +   +      KS H +R
Sbjct: 181 TVVESLEKYLLIRKDVETSEEFLFLTNNGKKMYPKLVYNIINSYFSSVTTKQKKSPHVLR 240

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
              AT   D GA  + +    G   +   + YT  
Sbjct: 241 HSFATHLLDNGADLNAVKELLGHAGLAATQVYTHS 275


>gi|296444833|ref|ZP_06886796.1| integrase family protein [Methylosinus trichosporium OB3b]
 gi|296257781|gb|EFH04845.1| integrase family protein [Methylosinus trichosporium OB3b]
          Length = 434

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 59/363 (16%), Positives = 112/363 (30%), Gaps = 37/363 (10%)

Query: 10  FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
           FV + R   G      R+    ++    P ++      + A            + R+K  
Sbjct: 42  FVVEYRPNGGGRGVAKRRVTIGKVGTLTPEQARKSAGELLARARLGADPAQEIADRRKAQ 101

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           T+  L   +      G L  ++R S+++   ++    G      +T   I +       +
Sbjct: 102 TVAALCDAFEVEHVDGKLKPSTRASYKAALARLKDAHGSAKAESVTRAQIATLHAKLATS 161

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           P  A + L++   LF W + + +V    NP   ++R  R+++  R  T +++ +  +  +
Sbjct: 162 PYVANRALSTWAKLFAWGMTRSFVPKGDNPAREIDR-YRESKRERFLTGDELGRLGAALA 220

Query: 188 EGSQPRLAFE------------------------------FLLYSGLRCSDSCRAGVQHL 217
           EG    L +                                L+ +G R  +   A    +
Sbjct: 221 EGETAGLPYAVDATKAKAKHAPKPENRLVKLDPFAVAAIRLLILTGARLREIMDAQWSQV 280

Query: 218 Q--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKA 275
                +  +   KTG             L  +  I      I   K           + A
Sbjct: 281 DFQRGMLFLADSKTGRKPIYLGAAALAVLADLPRIEGNPHIIAGAKDGAPRADLQRPWAA 340

Query: 276 KATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGI 333
               AG+     H +R   A++ A A      +    G       E Y    AD +R   
Sbjct: 341 VRQAAGLEGVRLHDLRHSFASVGAGASLGLPIIGKLLGHMQAATTERYAHLDADPLRRAA 400

Query: 334 KNS 336
              
Sbjct: 401 DTI 403


>gi|218290869|ref|ZP_03494933.1| integrase family protein [Alicyclobacillus acidocaldarius LAA1]
 gi|218239136|gb|EED06338.1| integrase family protein [Alicyclobacillus acidocaldarius LAA1]
          Length = 377

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 41/297 (13%), Positives = 95/297 (31%), Gaps = 40/297 (13%)

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSG--V 123
              T+  L+ ++     +  +   +   +       I    G      +   HI++   +
Sbjct: 59  SDMTVGKLLEDWLLDKQFH-VKPTTFELYSRIVTIHIAPMIGHLTLSDLRPDHIQNMYRM 117

Query: 124 ESRKHTPSSAIQFL---TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
             +K  P  A       + +R   K A++   +  +P  +VE P+     +  WT E ++
Sbjct: 118 LQQKTPPLQAKTIRTIHSILRNALKRALKWGLIPRDPSEAVELPRSPRRTLAIWTPEQIR 177

Query: 181 QFKSF-WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT----- 234
            F +      S+    F   +Y+G+R  +        +      I+  +T + +      
Sbjct: 178 TFLAVNQDIDSRYYTIFVLAIYTGMRKGEILALRWSDIDFERDIIQVTRTFSWVDGEAMF 237

Query: 235 -------------------VELP------DGFMKLLAMTPIGKETFFINNDKQKMNATQF 269
                              V+L       +   +L A +           D + +  +  
Sbjct: 238 LEAKTHHSNRSIAISHDVKVQLLRHREFQEQEKRLYADSYHDGNLVVARPDGEPIRLSSL 297

Query: 270 SIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
              ++    +AG+ +   H +R   A++    G     +    G   +    +TY+ 
Sbjct: 298 QKQWRHAVKRAGLPEIRFHDLRHTHASLLLLQGVHPKIVSERLGHSNISITMDTYSH 354


>gi|75674591|ref|YP_317012.1| tyrosine recombinase XerD [Nitrobacter winogradskyi Nb-255]
 gi|74419461|gb|ABA03660.1| tyrosine recombinase XerD subunit [Nitrobacter winogradskyi Nb-255]
          Length = 319

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 41/279 (14%), Positives = 89/279 (31%), Gaps = 38/279 (13%)

Query: 89  VNSRISFESYFDQIIRKSGDFDYRKI-----TTKHIRSGVESRKHTPSSAIQFLTSMRVL 143
            N+  ++    + +           +     T +   + ++ R    SS  + L++MR L
Sbjct: 27  ENTLDAYRRDLEDLSAFLARARRNFVIAETQTLRDYLNDLDLRGFKSSSVARRLSAMRHL 86

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---------SEGSQPRL 194
           F++ + +   + +P   +  PKR     +  +  D+ +                  + R 
Sbjct: 87  FRFLLSERVRSDDPAAILSGPKRGRSLPKVLSIADVDRLLGRAKADAESLDAPPARRLRA 146

Query: 195 A-----FEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKLLA-- 246
           A      E L  +GLR S+     +   + +    +   K      V L +   + +A  
Sbjct: 147 ARLYCLLEVLYATGLRVSELVSLPLSAARRDARMIVVRGKGDKERLVPLNNASRQAMADY 206

Query: 247 -----------MTPIGKETFFINNDK--QKMNATQFSIWFKAKATKAGVN---KSAHGVR 290
                           ++++   +      +    F+   K  A  AG+     S H +R
Sbjct: 207 LQTMADQRGAGKAASPRQSWLFPSFGESGHLTRQHFARELKELAAAAGLAPRLVSPHVLR 266

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              A+     GA    +    G   +   + YT   +  
Sbjct: 267 HAFASHLLHNGADLRIVQTLLGHTDISTTQIYTHVVEER 305


>gi|163856477|ref|YP_001630775.1| hypothetical protein Bpet2166 [Bordetella petrii DSM 12804]
 gi|163260205|emb|CAP42507.1| int2 [Bordetella petrii]
          Length = 402

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 56/328 (17%), Positives = 95/328 (28%), Gaps = 26/328 (7%)

Query: 44  IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-I 102
           +     A            +  +K  T+  L  ++ +         +++  ++   D+ I
Sbjct: 73  MAQDWLAEVRRGGDPGGAKTEARKAPTIAELCKKFMEDYSKKRNKPSTQEGYQGVIDRCI 132

Query: 103 IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA--INPCLS 160
           I   G      +    I   +E   + P+ A +    +R +F  A    Y     NPC  
Sbjct: 133 IPLLGRKKVLDVKRPDIAGLMEKLSYKPTEANKAFGVLRKMFNLAEVWGYRPDGTNPCRH 192

Query: 161 VERPKRKTE------GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRA-- 212
           V       E      G        + + ++   E     LA         R S+ C    
Sbjct: 193 VPMFPPGKETRLIVDGELALIYRHLDKLEAEGLENYVIPLAIRLQFEFAARRSEVCPLEW 252

Query: 213 GVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW 272
                +N        KTG +      + +  L          + + +         F   
Sbjct: 253 TWLDFENRRVVWPDSKTGGMSKPMSAEAYRLLSTAPRREGCPYVLPSPHNPDKHLTFGEH 312

Query: 273 FKAKA---TKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           +         AGV     HG+R  S T  A++G      M   G KTV     Y    D+
Sbjct: 313 YGGWCRVLKAAGVPHVGTHGIRHRSTTDIANSGVPTKVGMKLTGHKTVAMFMHYVHTEDK 372

Query: 329 -----------IRLGIKNSRRISSVVDS 345
                       R  I  +RR   V  +
Sbjct: 373 PVRDAAELVASRRQAITGARRTDPVETA 400


>gi|163755827|ref|ZP_02162945.1| integrase, site-specific recombinase [Kordia algicida OT-1]
 gi|161324348|gb|EDP95679.1| integrase, site-specific recombinase [Kordia algicida OT-1]
          Length = 295

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 40/263 (15%), Positives = 92/263 (34%), Gaps = 23/263 (8%)

Query: 85  GSLAVNSRISFESYFDQIIR----KSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFL 137
            + + ++  ++E            +  D     +    IR+ + S        ++  + +
Sbjct: 14  KNYSEHTVTAYEKDLRSFAEFCKKEYEDDSIINVHYVQIRNWIVSLVEKGLQNATINRKI 73

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-----EGSQP 192
           +S++  +K+ ++ + +  +P    +  K   +   P+++++M    +        EG + 
Sbjct: 74  SSLKTYYKYLLKTKQIEASPLAKHKALKTAKKVQVPFSQKEMDIVLNAVEFKNDFEGVRN 133

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMK-----LLA 246
           +   E    +G+R S+        +     +I+   K      V L           +L 
Sbjct: 134 KTIIEMFYATGMRRSELINLKQSDIDYTAKTIRILGKRNKERIVPLLQKLEAQLKEYILH 193

Query: 247 MTPIG---KETFFINNDKQKMNATQFSIWFKAKATKA--GVNKSAHGVRKFSATISADAG 301
              I    KE  F+     K+ +           + A   V KS H +R   AT   + G
Sbjct: 194 RKQIDNQKKEELFLTAKGNKIYSNLVYRLINDYFSIASTKVKKSPHMLRHTFATHLLNQG 253

Query: 302 ATAHELMATYGWKTVDQAETYTK 324
           A  + +    G  ++   + YT 
Sbjct: 254 ADLNAVKELLGHASLASTQVYTH 276


>gi|229165299|ref|ZP_04293086.1| Prophage LambdaBa04, site-specific recombinase, phage integrase
           [Bacillus cereus AH621]
 gi|228618124|gb|EEK75162.1| Prophage LambdaBa04, site-specific recombinase, phage integrase
           [Bacillus cereus AH621]
          Length = 374

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 43/292 (14%), Positives = 95/292 (32%), Gaps = 37/292 (12%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH 128
           TL   + E+ ++     +   +  +++   + +II   G    + +   H +  V+S   
Sbjct: 64  TLSEYLQEWLENTAKQRVRETTFTNYKRAVNNRIIPVLGSHKLKDLKPLHGQRFVKSLID 123

Query: 129 ---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
              +P         ++   + AV+ E +  NP   VE P+ +      W+ E+ + F ++
Sbjct: 124 EELSPKYIEYIFIVLKGALEDAVKWELLYKNPFEHVEIPRPRKVVNNTWSIEETKTFLTY 183

Query: 186 WSEGSQPRLA-FEFLLYSGLRCSDSCRAGVQHL---------------QNNIFSIKTQKT 229
               +      F   L +G+R  +      +++                   F     KT
Sbjct: 184 AKFDNPIYYHLFLLALNTGMRRGELLGLKWKNVDLVEGKISVTETLIYDERGFRFTEPKT 243

Query: 230 -GTIITVELPDGFMK--------------LLAMTPIGKETFFINNDKQKMNATQFSIWFK 274
            G+   + +     K               +       +  F   D Q +     +  F+
Sbjct: 244 SGSKRLISIDQTLCKEFKSYKAKQNEFKLAIGTAYEDHDLVFCREDGQPIYPRTLTTIFE 303

Query: 275 AKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
                + + K   H +R   AT+    G     +    G  ++    +TY+ 
Sbjct: 304 RVVKTSKIPKIRFHDLRHTHATLLLKLGINPKIVSERLGHSSIKTTLDTYSH 355


>gi|182420027|ref|ZP_02951261.1| integrase [Clostridium butyricum 5521]
 gi|182376064|gb|EDT73651.1| integrase [Clostridium butyricum 5521]
          Length = 380

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 60/348 (17%), Positives = 118/348 (33%), Gaps = 48/348 (13%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG-S 86
           G  RR+            A+  A      K     SP       K  I ++         
Sbjct: 24  GKRRRVIKQGFRTKKLAEAF--ATQILDKKNHGFVSPTDSDLLFKNFIMKWYDMHTTSLK 81

Query: 87  LAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSG----VESRKHTPSSAIQFLTSMR 141
           L+VN+R  + S  +  +I   G++  + I+   +++     +  +   P +  ++L  + 
Sbjct: 82  LSVNTRNDYLSRINTNLIPLLGEYKIKDISIDVVQNFYNTLINEKHLKPVTVKKYLDILS 141

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201
              K+A  ++ +   P   +++ K +   I  W ++++  F ++    +         + 
Sbjct: 142 SCLKYAQSKDLIYKLPTNYIQKVKIQKPKIEYWNQDEVNFFLNYIK-NTYLYTPIFIDVL 200

Query: 202 SGLRCSDSCRAGVQHLQ--NNIFSIKTQ---------------KTGT---IITVE--LPD 239
           +GLR  + C      +   N I ++  Q               KT +    IT+   L D
Sbjct: 201 TGLRIGELCGLRWCDVDLQNGIITVNHQLIHDKRLKVLMLTDLKTSSSHRRITIPKILID 260

Query: 240 GFMKLLA-MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-------------- 284
              +L A  +        ++ +  K      S+ F  K  K   +K              
Sbjct: 261 YLKELKADRSATDNGYVVLDRNDYKYTPRSLSMNFTKKVAKFSDSKEKHKDDKNYMQLKQ 320

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIR 330
            S HG+R   AT+    G     +    G   +     TYT   D ++
Sbjct: 321 ISFHGLRHTHATLLIANGENVKVVSERLGHTDIRMTLNTYTHVLDSMK 368


>gi|259909803|ref|YP_002650159.1| site-specific tyrosine recombinase XerC [Erwinia pyrifoliae Ep1/96]
 gi|224965425|emb|CAX56957.1| site-specific tyrosine recombinase [Erwinia pyrifoliae Ep1/96]
          Length = 351

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 44/289 (15%), Positives = 105/289 (36%), Gaps = 32/289 (11%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFE---SYFDQIIRKSGDFDYRKITTKHIRSGV--- 123
           TL+ L   +         +  +   +      F       G     +++   + +     
Sbjct: 20  TLRQLAESWLAHLVVAGRSARTAQGYGERVRAFLAWCEPRGITYAPQVSLAVLEAYQRWL 79

Query: 124 ------ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI-RPWTK 176
                 + ++   +S +  L+++R+LF+W +++ ++  +P   +E PK +     + +++
Sbjct: 80  QGYRRADGKQLVVNSQLHRLSAVRMLFRWLLKRHHILYSPAEQLELPKEERRLPAQVFSE 139

Query: 177 ED----MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTG 230
            +    +Q   +    G + R   E L  SG+R S+     +  +     + +++  K G
Sbjct: 140 AETRRVLQSLDAGTPPGLRNRAILELLWSSGIRRSELAGLLLSDVDFTRGVVNVRRGKGG 199

Query: 231 TIITVEL----PDGFMKLLA------MTPIGKETFFINNDKQKMNATQFSIWF-KAKATK 279
               V +         + L                FI++    +     +    +A  + 
Sbjct: 200 KDRVVPVGHTALMWLARYLKDVRPRLAQRFDSGHLFISHKGTGLAHGTLTAMAGRAIRSG 259

Query: 280 AGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           A + K+   H  R   AT   + GA    + A  G + ++  + YT+ A
Sbjct: 260 AHLKKAGACHIFRHTMATQMLENGADTRHIQAILGHEKLETTQIYTRVA 308


>gi|119944179|ref|YP_941859.1| phage integrase family protein [Psychromonas ingrahamii 37]
 gi|119862783|gb|ABM02260.1| phage integrase family protein [Psychromonas ingrahamii 37]
          Length = 337

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 33/238 (13%), Positives = 86/238 (36%), Gaps = 7/238 (2%)

Query: 94  SFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--TPSSAIQFLTSMRVLFKWAVRQE 151
           S        +   G     K+T + +++ ++   +   P++  ++  ++  L+++   + 
Sbjct: 80  SKHQRLRYWVSVFGSLKVGKVTRQQVKAELKRLSNDKAPATLNRYKAALGSLYRYLSDEF 139

Query: 152 YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY--SGLRCSDS 209
            +  NP   + +        R  + E++    +   +    +L    L+   +G R S+ 
Sbjct: 140 DIDYNPVKGIRQYTENDARTRFLSDEELSILFAMVKQSKWDQLFLLVLMAITTGARRSEM 199

Query: 210 CRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT 267
                  +  +     +   K G    + L    +  L          F + D   +   
Sbjct: 200 LTLEWDDINFKTKTAHLPNTKNGEQRILTLTGDVITELMKYRCIGGYVFPHPDDPTIYFR 259

Query: 268 QFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            F I +++   +  + +   H +R   A++ A  GA+  E+    G K++   + Y+ 
Sbjct: 260 NFDIHWQSALREGEITDFRFHDLRHTCASLLAMNGASLLEIAQVLGHKSITMTQRYSH 317


>gi|298695304|gb|ADI98526.1| probable integrase [Staphylococcus aureus subsp. aureus ED133]
          Length = 390

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 64/385 (16%), Positives = 127/385 (32%), Gaps = 62/385 (16%)

Query: 17  RHGKIIYYFRK---GHGRRIRLPYPHESTF----IPAYMSALTGSTPKREYINSPRKKPT 69
           + G   + +R          +  Y   S F       + + +     +     +P    +
Sbjct: 6   KRGNT-WRYRISLGKDAETGKYKYISNSGFKRKSDAKHHAEMVERQLRNGEYIAP--STS 62

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           T K +  ++ K      + V+S  + E      I +  +   + I     +  V      
Sbjct: 63  TFKQVADDWLKQYA-NEVKVSSVRAREKAIHHAIERFNNKPIQTINKHEYQRFVNDISAQ 121

Query: 130 PSSA--IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK--------TEGIRP-WTKED 178
            S       + S  ++FK+A   + + I P   ++RPK+K        TE  +    K++
Sbjct: 122 YSKNYVDSIIASTNMIFKYAYDMKLIRILPSEGIKRPKKKVSVEELEDTEIHKKFLEKDE 181

Query: 179 MQQFKSFWSEGSQPRLAFEF---LLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ------ 227
           + QF         P+ +FE    L Y+G+R  +        +   NN  +I         
Sbjct: 182 LFQFLEVAKNHHSPQNSFEVFCTLAYTGMRAGELLALKWSDIDFENNTINITKTYYNPNN 241

Query: 228 ----------KTGTII-TVELPDGFMKLLAMTPIG------------KETFFINNDKQKM 264
                     KT + I  + +    +KLL    +                 F + +   +
Sbjct: 242 NKKQYQVLTPKTESSIGKIPVDPHVIKLLKNYKVDVQDTWKNELYVDNNFVFTDVNGYPL 301

Query: 265 NATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE- 320
              +  +W KA   K  +     S H  R     +  +AG    E+      K ++    
Sbjct: 302 VIKKLQLWIKAILKKTDITNKQISTHSFRHTHCALLIEAGVHIKEIQERLRHKDINTTMN 361

Query: 321 TYTKGADRIRLGIKNSRRISSVVDS 345
            Y K  +  +     S++ S +++S
Sbjct: 362 IYAKITNSYKK--DASQKFSKLMES 384


>gi|262184376|ref|ZP_06043797.1| site-specific tyrosine recombinase XerC [Corynebacterium
           aurimucosum ATCC 700975]
          Length = 292

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 40/265 (15%), Positives = 85/265 (32%), Gaps = 21/265 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE---SRKHTPSSAIQFLTSMR 141
              +  +   + S    +  +  +  +   T   +R  +    +   + S+  +   ++R
Sbjct: 20  RGRSEATVRGYCSDLRLLAPEVPE--FAAFTLNSLREWLAHAVAEGKSRSTLARRTAAVR 77

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM-----QQFKSFWSEGSQPRLAF 196
               WA R+ Y+  +    +  PK         +             +      +     
Sbjct: 78  AFSTWAAREGYLESDVAQRLATPKVGKHLPTVMSPTAAGELMGNAVSTDEVHFLRDSAML 137

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAM-------- 247
           EFL  +G+R ++     V  +  +  + + T K      V   D     L          
Sbjct: 138 EFLYATGVRVAELVGLDVGDIDLSRRTARVTGKGNKQRVVPFGDAAHDALCAWLKTGRPE 197

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHE 306
                E  F+     +++A Q     +  A   G    + HG+R  +AT   + GA    
Sbjct: 198 LAGETEAVFVGTRGGRIDARQVRRVVERAAQVTGAPGLTPHGLRHSAATHLLEGGADLRI 257

Query: 307 LMATYGWKTVDQAETYTK-GADRIR 330
           +    G  ++   + YT   A R++
Sbjct: 258 VQELLGHSSLQTTQVYTHVSAQRLK 282


>gi|253699016|ref|YP_003020205.1| integrase family protein [Geobacter sp. M21]
 gi|251773866|gb|ACT16447.1| integrase family protein [Geobacter sp. M21]
          Length = 439

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 57/351 (16%), Positives = 112/351 (31%), Gaps = 49/351 (13%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHES-TFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISE 77
           GK   Y   G    + L    E+     A + A T    +++     R+K  T+  L +E
Sbjct: 50  GKKR-YMWLGSYPAVPLAAAREACEVARAKVKAGTDPLAQKDAELEERRKAPTVADLCAE 108

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT--PSSAIQ 135
           Y +  H      + +   +     ++ + G    R IT + +   +E       P  A  
Sbjct: 109 YLE-RHAKQFKRSWQKDEQMIKRDVLPEWGKRKARDITKRDVVLLLEKIMDRGAPIQANT 167

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF---KSFWSEGSQP 192
               +R +F +AV ++ +   PC  V+ P  K    R  ++ + + F          ++ 
Sbjct: 168 TFALIRKMFNFAVERDVLEHTPCHGVKPPAPKVARDRVLSESETRSFWHNLDACCMSNET 227

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLAMT-- 248
           R A + +L +  R  +        ++   + +     K      V L     ++LA    
Sbjct: 228 RRALKLVLVTAQRPGEVIGMHTDEIKGEWWILPGDRVKNKKSHRVYLSTLAREILAEAVA 287

Query: 249 --------PIGKETF-------------------FINNDKQKMNATQFSIWFKAKATKAG 281
                   P  +E                      I    + + +      FK    + G
Sbjct: 288 ENKEKLGIPGDQEYRGFMFPSPQLAKVQPIAPQALIVAVGRALASPVLDPNFKRVLDREG 347

Query: 282 ----------VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
                      + + H +R+ +AT  A++G     + A            Y
Sbjct: 348 KPVTVNRLEVAHFTPHDLRRTAATFMAESGEMDEVIDAVLNHAKQGVIRVY 398


>gi|119961787|ref|YP_948168.1| tyrosine recombinase XerC [Arthrobacter aurescens TC1]
 gi|119948646|gb|ABM07557.1| putative tyrosine recombinase XerC [Arthrobacter aurescens TC1]
          Length = 311

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 43/299 (14%), Positives = 104/299 (34%), Gaps = 31/299 (10%)

Query: 68  PTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSGV 123
           P  L+  +  +R+      + + ++  ++ S  + ++    + G  + R++    +R  +
Sbjct: 10  PGPLQKAVDGFRRYLEGECARSAHTVRAYLSDVESLLGFAVQEGVQELRQLELGSLRRWL 69

Query: 124 ESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
            ++       ++  +   + R    WA+R+E +  +P + ++ PKR         ++ + 
Sbjct: 70  GAQSEAGMARATLARRAATARSFTGWALREELIETDPAVRLQAPKRDKSLPGVLQQQQVS 129

Query: 181 QFKSFW--------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT- 231
           +                 + R   E L  +G+R  +     +  L  +  +++    G  
Sbjct: 130 RMVDDLNTAAADGGPMALRNRAMVELLYATGVRVGELAGLDIDDLDPDRRTVRVLGKGNK 189

Query: 232 --------IITVELPDGFMKLLAM--TPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281
                      V + D   +              F+     +++  Q            G
Sbjct: 190 ERTVPFGVPAAVAVDDWLRRGRPAVVGATSGPALFLGVRGNRVDPRQIRAVVSELLQALG 249

Query: 282 VNKSA---HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNS 336
            + SA   H +R  +AT   D GA    +    G  ++   + YT    DR+R   + +
Sbjct: 250 -DTSATGPHALRHSAATHLLDGGADLRAVQEILGHSSLATTQIYTHVSVDRLRKSYQQA 307


>gi|302534721|ref|ZP_07287063.1| phage integrase [Streptomyces sp. C]
 gi|302443616|gb|EFL15432.1| phage integrase [Streptomyces sp. C]
          Length = 422

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 51/361 (14%), Positives = 110/361 (30%), Gaps = 66/361 (18%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDF 109
           L                 +T+   ++ +  S     L  N+   + +     +I   G  
Sbjct: 56  LAEKIADSNRGLPVATADSTVGDYLTYWLGSVAVHRLRENTHTRYAACVRLHLIPGLGTK 115

Query: 110 DYRKITTKHIRSGVESRKHT---------------------------PSSAIQFLTSMRV 142
              ++T K +R+ ++  + T                             +     + ++ 
Sbjct: 116 KVARLTAKDVRTFLDRLRTTCQCCTQGLDTERKRCCAIGECCQKQLSALTVTYVHSVLKS 175

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202
             + AVR++ +  N   +V+    +    RP T  + +QF    +   +    +E  L +
Sbjct: 176 ALEHAVREDELPRNVARNVKTTTHQPRRFRPLTAAEARQFLD-AARADRLHALYELALRT 234

Query: 203 GLRCSDSCRAGVQHLQ-----------------NNIFSIKTQKTGTIITVELPDG----F 241
           GLR  +      + L                    +  + T+   +   + LP       
Sbjct: 235 GLRKGELLGLHWEDLDLTTGTASIHRSLQRTRTGGLTHLPTKTRASERRIALPTECLHSL 294

Query: 242 MKLLAMTPIGKET----------FFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVR 290
            +        +ET           F       ++    +  F++   +AG+ +   H +R
Sbjct: 295 KEHKGRQDKERETAESAWQDSGLVFTTPTGGPLDPANLTRRFRSFLDRAGLRRIRFHDLR 354

Query: 291 KFSATISADAGATAHELMATYGWKTVD-QAETYTKGADRIRLGIKNSRRISSVVDS--DD 347
             +AT+  + G     +    G   +   A  Y     R+RL       +   + S  DD
Sbjct: 355 HSTATLLLEQGVDLVVIKELLGHAHIGVTAGVYAHV--RLRLQRDAIDTLGHAIGSQEDD 412

Query: 348 P 348
           P
Sbjct: 413 P 413


>gi|254459169|ref|ZP_05072591.1| phage integrase [Campylobacterales bacterium GD 1]
 gi|207084062|gb|EDZ61352.1| phage integrase [Campylobacterales bacterium GD 1]
          Length = 277

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 36/255 (14%), Positives = 82/255 (32%), Gaps = 23/255 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLF 144
            +L+  S  +++     I  +        + +  + S +   K+   +  + L+++   F
Sbjct: 22  RALSKKSVEAYKGDLSSIEDEL-QIPLINLESNSVLSFLSKYKNK-RTLNRKLSAINAFF 79

Query: 145 KWAVRQEYVAINPCLSVERP--KRKTEGIRPWTKEDMQQF-----KSFWSEGSQPRLAFE 197
            +  +    +       +    K      +  + +++Q       ++ W  G +      
Sbjct: 80  DFCYK----SHFSAEKTKYKFAKIPKLLPKFLSYKEIQNSLLLIDRNSW-LGLRDYALII 134

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL----PDGFMKLLAMTPIGKE 253
           FL  SG R S+      + +++    I+  K      V +     D     L   P   E
Sbjct: 135 FLFASGARISECLALRREDIEDGWLHIRHAKGEKERIVPVAKVALDAISTYLNEKPKENE 194

Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGW 313
             + N     ++        +       +N S H +R   AT     GA    +    G 
Sbjct: 195 YVWCNYKGDALSRISAYKITQKY-----LNVSPHVLRHSYATSLISGGADLRVVQELLGH 249

Query: 314 KTVDQAETYTKGADR 328
            ++   + YT    +
Sbjct: 250 ASLLTTQIYTHIQKQ 264


>gi|186686835|ref|YP_001870028.1| phage integrase family protein [Nostoc punctiforme PCC 73102]
 gi|186469187|gb|ACC84987.1| phage integrase family protein [Nostoc punctiforme PCC 73102]
          Length = 335

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 54/300 (18%), Positives = 107/300 (35%), Gaps = 35/300 (11%)

Query: 60  YINSPRKKPTTLKWL-ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH 118
            +   R+ PT ++W+ + E+ +S    +LA NSR  +E    + +    +  Y ++  +H
Sbjct: 25  QLGETRRPPTDIRWVKVLEFLRS---NNLAPNSRKLYERELKRFLA-WSELHYHELRPRH 80

Query: 119 I-------RSGVESRKHTP---SSAIQFLTSMRVLFKWA--VRQEYVAINPCLSVERPKR 166
           +       R  + +    P   SS    + +++  FKW      E ++ NP L ++  K 
Sbjct: 81  LALYKEYLRDEIRTDAGKPLSKSSINAGIAALKSFFKWMCYTYPEIISTNPTLGIKLEKV 140

Query: 167 KTEGIRPWTKEDMQQFKSFWSE--GSQPR-LAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223
                +  T E+M+Q  S       ++ R  A   +L  GLR  +  +  V      +  
Sbjct: 141 PLPPAQSLTPEEMEQVWSALELLGETKQRDTALVHILSHGLRAGEVVQLNVGSFDGKLLF 200

Query: 224 IKTQKTGTIITVELPDGFMKLLAM----------TPIGKETFFINND----KQKMNATQF 269
           +   KT     V L     ++LA                    I++      ++++    
Sbjct: 201 LPDTKTNEPRLVPLKKESREVLAQYLLTRQQSGEVLTSLSPLMISHHASYKGERLSYHGI 260

Query: 270 SIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
               +     A + +   H  R   AT     G          G ++      YT  +++
Sbjct: 261 YFAVEKIGEIALIEDLHPHSFRHTYATDLLLLGVDPSHARKLTGHQSEKAFRRYTLRSEQ 320


>gi|329926877|ref|ZP_08281280.1| site-specific recombinase, phage integrase family [Paenibacillus
           sp. HGF5]
 gi|328938864|gb|EGG35237.1| site-specific recombinase, phage integrase family [Paenibacillus
           sp. HGF5]
          Length = 343

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 53/312 (16%), Positives = 100/312 (32%), Gaps = 43/312 (13%)

Query: 56  PKREYINSPRKKPT-TLKWLISEYRKSAHWGSLAVNSRISFESYF----DQIIRKSGDFD 110
            + + IN+ +  P  TL+  +     +     L   +   +E ++      +     + +
Sbjct: 5   KRTKRINTDKSYPQLTLEQALDMAISAKRAEGLRKRTIRDYEKHYGYFVKWLRVNHPEAE 64

Query: 111 Y-RKITTKHIRSGVESRKHTPS--------------------SAIQFLTSMRVLFKWAVR 149
           Y   ++   +R  V   KH                       +    L +++ LF    R
Sbjct: 65  YIEDVSAAILRDFVLYMKHDARRYDGHKYINSDKQRIGLEDTTINIRLRTLKALFNQLER 124

Query: 150 QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLAFEFLLYSGLR 205
            E + +NP   V+  ++  +     T E++    +        G +  +A   +L SGLR
Sbjct: 125 DELIEVNPAGPVKLLRQDVDLTNGLTDEEVTAILAQPDRRDFVGFRDYVAICLMLDSGLR 184

Query: 206 CSDSCRAGVQHLQ--NNIFSIK--TQKTGTIITVELPDGFMKLLAMTPIGK------ETF 255
            S+        +       ++     K      V +     KLL             +  
Sbjct: 185 ISEMLSLRAADIDFQTRFITLPGDRNKNRKPRLVPISAQVTKLLLQLIDENRAHFTTDRL 244

Query: 256 FINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATISADAGATAHELMATYG 312
           F++     + A  F+   K    KAG+     +AH  R   A      GA    L    G
Sbjct: 245 FLSCYGDPVTANHFNKRLKYYGEKAGIEGKKMTAHVYRHTWARSMVLNGADLFTLQKMGG 304

Query: 313 WKTVDQAETYTK 324
           W+ V     Y +
Sbjct: 305 WQDVRTMRRYVQ 316


>gi|332182173|gb|AEE17861.1| integrase family protein [Treponema brennaborense DSM 12168]
          Length = 445

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 53/347 (15%), Positives = 108/347 (31%), Gaps = 50/347 (14%)

Query: 20  KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYR 79
           +   Y       +  +P      F+  +         K  Y+     K  ++     +Y 
Sbjct: 96  RNYLYSAVPKTSKGSIPI---EDFLENFWD-----YDKSPYVREKLGKKQSIH---RQYC 144

Query: 80  KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQF 136
            +     L   +R         I R +G     +IT K + +     E++K  P +    
Sbjct: 145 AT-----LLSRTR------LYWIPRLAGKC-VAEITRKDVDAFFSSDEAQKLAPKTVNSI 192

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196
           + ++ +  KWA   E    N    + +    ++  +    E   +      +  + ++A 
Sbjct: 193 IETITIPLKWAYYNELTQNNCFDGIIKCSNISKKRKILDMETATKLMELDWDNDEAKIAN 252

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ----------KTGTIITVELPDG------ 240
           E  +++G+R  +     V  L  +   ++            K G   +V +P        
Sbjct: 253 ELAMHTGMRAGEIQALTVDDLGEDEIYVRRSWSKYDGLKCCKNGEERSVPIPISHQLYLK 312

Query: 241 FMKLLAMTPIGKETFFI-NNDKQKMNATQFSIWFKAKATKAGV----NKSAHGVRKFSAT 295
              L    P      F      + M++ QF+ + K      G     +   H  R F  +
Sbjct: 313 LKMLAEFNPHDNGFIFYSTVPDKPMDSKQFNKYLKRALKDIGFENPEDICFHSWRHFFCS 372

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIR---LGIKNSRRI 339
              D       +MA  G KT      Y    +  +   L     +++
Sbjct: 373 RMLDYVQDKRYIMALSGHKTEAMLNHYAAHLEDEKVVNLARSVMKKV 419


>gi|300770362|ref|ZP_07080241.1| phage integrase family site-specific recombinase [Sphingobacterium
           spiritivorum ATCC 33861]
 gi|300762838|gb|EFK59655.1| phage integrase family site-specific recombinase [Sphingobacterium
           spiritivorum ATCC 33861]
          Length = 419

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 82/388 (21%), Positives = 154/388 (39%), Gaps = 50/388 (12%)

Query: 1   MTPSLRLPP-FVTKER---TRHGKIIYYFRKGHG---RRIRLPYPHESTFIPAYMSALTG 53
           ++  + +PP +  KER    ++ KI  Y R  +     R+R+        + A  S  T 
Sbjct: 37  LSLQISVPPLYWDKERECIKKNNKIKGYVRLNNFIDNERVRMKN----QLVEAEQSDRTL 92

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR--KSGDFDY 111
           S+ K + I    ++P   +    +Y+K+    S +V     +++  +++ R  KS    +
Sbjct: 93  SSKKIKDIIKGEEEPDFFE-FAEQYQKTIE-SSESVRLYNQYKAILNKLERFNKSRQLKF 150

Query: 112 RKITTKHIRSGVESR----KHTPSSAIQFLTSMRVLFKWAVRQEYV--AINPCLSVERPK 165
            +IT  +++   E      K+  ++    L  +R L+  A  +E V    NP   ++  +
Sbjct: 151 SEITVSYLKRFSEHLATECKNRTNTISTNLKVIRKLYNLATLEEVVPEERNPFKKLK-LE 209

Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSG-LRCSDSCRAGVQHL-QN 219
            +   I   TKED+ + +    +        R  F F +Y+G LR SD      + +  +
Sbjct: 210 WEKTNIGYLTKEDIDKIRHVELDPMGKDYHIRNMFVFAMYTGGLRFSDLLMLRWEDVQDD 269

Query: 220 NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET-------FFINNDKQKMNATQFSIW 272
               + TQKT T +TV+L +  + +L++      T        F++NDK   N       
Sbjct: 270 ERVKVYTQKTKTNLTVKLTNVSLAILSIYRPSTYTNASGFIFPFLDNDKNYSNPKYLYRR 329

Query: 273 F-----------KAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
                       +    K+G+NK    H  R   AT   + G     +    G  +V   
Sbjct: 330 ISSINAVANTRLREIGKKSGINKHLHFHMSRHTFATRGLEIGMPLTHISKLMGHSSVAMT 389

Query: 320 ETYTKGADRIRLGIKNSRRISSVVDSDD 347
           E Y K  ++     K    I    ++++
Sbjct: 390 ENYAKLINKEL--DKAMDLIDKYEEANN 415


>gi|167829962|ref|ZP_02461433.1| phage integrase family protein [Burkholderia pseudomallei 9]
 gi|226199441|ref|ZP_03794999.1| phage integrase family protein [Burkholderia pseudomallei Pakistan
           9]
 gi|225928517|gb|EEH24546.1| phage integrase family protein [Burkholderia pseudomallei Pakistan
           9]
          Length = 350

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 43/282 (15%), Positives = 100/282 (35%), Gaps = 19/282 (6%)

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
           I     + TT+   +  Y +     +   +++    +   ++    G +    +T   + 
Sbjct: 51  IQRAPSEKTTVADALDRYEREIV-PTKKTSTQRREGARIRELKAHFGKYSLAAVTPDLVG 109

Query: 121 SGVESRKHTPSSAIQF---LTSMRVLFKWAVRQEYVAI--NPCLSVERPKRKTEGIRPWT 175
              + R     +       L  +  LF  A+++ ++ +  NP  ++ +P+      R  +
Sbjct: 110 RYRDDRLAQGKANNTVRLELALLGHLFNVAIKEWHIGLVYNPVANIRKPRPGEGRNRRLS 169

Query: 176 KEDMQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGT 231
             +     +   + + P L       + +G+R S+        +     +  +   K   
Sbjct: 170 GREQALLLAAIDKHTNPMLGWIVRLAIETGMRQSEIVGLRRGQIDLERRVVRLTDTKNNA 229

Query: 232 IITVELPDGFMKLLA------MTPIGKETFFINNDKQ--KMNATQFSIWFKAKATKAG-V 282
             TV L      +L       + PI  +  F     +  K  A QF+  + A   + G +
Sbjct: 230 ARTVPLTKLAASVLQSALANPIRPIDTDLVFFGEPGRDGKRRAYQFTKVWNAIKKQTGLI 289

Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +   H +R  + +   +AG +  E+ +  G K++     YT 
Sbjct: 290 DFRFHDLRHEAVSRLVEAGLSDQEVASISGHKSMQMLRRYTH 331


>gi|86741839|ref|YP_482239.1| tyrosine recombinase XerD [Frankia sp. CcI3]
 gi|86568701|gb|ABD12510.1| Tyrosine recombinase XerD [Frankia sp. CcI3]
          Length = 443

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 52/333 (15%), Positives = 98/333 (29%), Gaps = 56/333 (16%)

Query: 69  TTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRS 121
            T   +I  Y         LA NS +++     +            +            +
Sbjct: 87  GTPAGVIERYLHHLEGERGLARNSVLAYRRDLRRYCDHLSACGLPSLDAVGEAEVAGFAA 146

Query: 122 GVESRKHT-----PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
            + +   T      +S  + L ++R L ++A  +  V  +    V  P       +  + 
Sbjct: 147 VLRTGDDTHPPLAAASVARMLVAVRSLHRFAADEGDVPEDVSRPVRPPTPPRRLPKALSI 206

Query: 177 EDMQQFK-----------------------------SFWSEGSQPRLAFEFLLYSGLRCS 207
           + +                                 +      +     E L  +G R S
Sbjct: 207 DQVVAVLAAAAGAPPPGSPPPSGRPQPSGRPQPVEPAEAVRRLRATALLELLYGTGARIS 266

Query: 208 DSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLA----------MTPIGKETFF 256
           ++    V  L     S++   K G    V L    +  +A          + P      F
Sbjct: 267 EAVGLDVDDLDLEAASVRLHGKGGRDRIVPLGRYAIAAVADYLRVGRPTLVAPRSGPAVF 326

Query: 257 INNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKT 315
           ++    +++        +  A  AGV   S H +R   AT   D GA    +    G  +
Sbjct: 327 LSRRGNRLSRQSAWSVLRTAALAAGVEGVSPHVLRHSFATHLLDGGADVRVVQELLGHAS 386

Query: 316 VDQAETYT-KGADRIRL--GIKNSRRISSVVDS 345
           V   + YT    DR+R      + R + + + S
Sbjct: 387 VSTTQIYTLVTVDRLREVYAASHPRALGAALGS 419


>gi|312897736|ref|ZP_07757152.1| site-specific recombinase, phage integrase family [Megasphaera
           micronuciformis F0359]
 gi|310621120|gb|EFQ04664.1| site-specific recombinase, phage integrase family [Megasphaera
           micronuciformis F0359]
          Length = 361

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 60/356 (16%), Positives = 115/356 (32%), Gaps = 56/356 (15%)

Query: 1   MTPSLRLP--PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKR 58
           M+   + P   +V    T +GK  Y++ +                      A      K+
Sbjct: 1   MSKIKKRPDGRYVMTFTT-NGKRRYFYGRTRSE----------------AQAKYDEFIKK 43

Query: 59  EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTK 117
               +      T+     E+ +     S+  ++  S+ +     I+ + G      +T  
Sbjct: 44  SENLANFDGNITIAEWAKEWLRIKE-PSITPSTLDSYRNVIRHYIVPEIGTIKLVDLTAP 102

Query: 118 HIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK-RKTEGIRPW 174
            IR  +  +  T    +     T +  + K AV  E +A N    V +PK  +T+ +   
Sbjct: 103 TIRRLLTIKMETLSSRTVRYIHTLLNAMLKQAVLDEIIATNAAAKVRKPKLHRTKEMVTL 162

Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-------------- 220
           T ++++ F S         L F+    SGLR S+       ++  +              
Sbjct: 163 TADEVKLFLSKIPIPEHHML-FKLAFASGLRRSELLGLPWSNVDLDKKTITITQTVIKID 221

Query: 221 ---IFSIKTQKTGTIITVELPDG-----------FMKLLAMTP--IGKETFFINNDKQKM 264
              + S  T+   +  ++ L D                   +P  +  +  F   D + +
Sbjct: 222 NEAVISETTKNASSRRSITLDDETIAELKKHAQRVKATRLASPNWVHNDLVFPGKDGKPI 281

Query: 265 NATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
                S   K  A + G    S HG R   AT+  +AG     +    G  +  + 
Sbjct: 282 FPDSVSQLCKRYAAQIGKPSFSMHGTRHTHATLLIEAGVNFKVIQVRLGHSSFTET 337


>gi|91214773|ref|ZP_01251746.1| tyrosine type site-specific recombinase [Psychroflexus torquis ATCC
           700755]
 gi|91187200|gb|EAS73570.1| tyrosine type site-specific recombinase [Psychroflexus torquis ATCC
           700755]
          Length = 379

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 36/253 (14%), Positives = 91/253 (35%), Gaps = 20/253 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR----SGVESRKHTPSSAIQFLTSM 140
              + N+  +++S      +   +   + +T + I       +   K + S+    + ++
Sbjct: 105 KGFSKNTVDNYKSSLKPFFKYFENQSLKSVTKEQIEGYVFELISKYKISESAQNTIINAI 164

Query: 141 RVLFKW--AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEF 198
           +  ++    + +EY       ++ RPK+  +        ++++  +      + +     
Sbjct: 165 KCYYEHTLGLPREY------YNITRPKKSQDLPNILHINEVRRIINS-PSNLKHKTILHT 217

Query: 199 LLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMT-PIGKETF 255
           +  +GLR  +  R  V  ++       IK  K        L    ++LL     I K  +
Sbjct: 218 IYGAGLRVGELIRLRVVDIRSEEGYIFIKDSKGKKDRHTVLSKHLLELLREYYKIYKPAY 277

Query: 256 FINND--KQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATY 311
           ++       + ++T     ++    +   N   + H +R   AT   + G +   + A  
Sbjct: 278 WLFEGQTGGQYSSTSIQSIYRKAVKETNGNPWSTPHTLRHSFATHLMERGTSLRHIQAAL 337

Query: 312 GWKTVDQAETYTK 324
           G  +    E YT+
Sbjct: 338 GHNSSKTTEIYTR 350


>gi|325509244|gb|ADZ20880.1| site-specific recombinase, phage integrase family [Clostridium
           acetobutylicum EA 2018]
          Length = 328

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 84/224 (37%), Gaps = 21/224 (9%)

Query: 132 SAIQFLTSMRVLFKWAV-RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           +  + + ++R  FK+   + + +  NP L +E P          T E+ Q   +      
Sbjct: 99  ARARKIAALRSFFKYISGKAKIIKENPTLELESPSLPKRNPIYLTLEESQALLNSIDGPF 158

Query: 191 QPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA-- 246
           + R        L  GLR S+     +  ++ +  +I   K     T+ L +  +K +   
Sbjct: 159 KERDYCIITLFLNCGLRLSELVSIDISKIKGDTLTI-LGKGNKERTIYLNEMCLKAIEDY 217

Query: 247 ----------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFS 293
                     +    K+  FI+    ++N     +  K  A KA ++    + H +R  +
Sbjct: 218 IPVRNQKASSIKIEDKDALFISRKLTRINQRTIELMVKKYALKANLDYEKLTPHKLRHTA 277

Query: 294 ATISADAG-ATAHELMATYGWKTVDQAETYTKGADR-IRLGIKN 335
           AT+    G      L    G ++V   + YT   D  +R  +K+
Sbjct: 278 ATLMYKYGNVDIRSLQQILGHESVSTTQIYTHIDDENLRKAVKS 321


>gi|260425750|ref|ZP_05779730.1| site-specific recombinase, phage integrase family [Citreicella sp.
           SE45]
 gi|260423690|gb|EEX16940.1| site-specific recombinase, phage integrase family [Citreicella sp.
           SE45]
          Length = 308

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 43/277 (15%), Positives = 90/277 (32%), Gaps = 28/277 (10%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQII--------RKSGDFDYRKITTKHIRSGVES 125
           +  +  SA      A N+  ++ +   + I           G     ++TT  +R+ +  
Sbjct: 13  LENWLASARALKGAAENTITAYRADVLEFIVFLTTHHAEPQGLKPLARVTTPDMRAFMAH 72

Query: 126 RK---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK------ 176
            +     P S  + L++++  ++W   +E       +    PK + +  RP  +      
Sbjct: 73  LRGQGAAPRSMARKLSAVKSFYRWLAEREGFEPTAVIMARAPKFQKKLPRPLDESAARAM 132

Query: 177 -EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
            E ++   +    G++       L   GLR S++     +          T K G    V
Sbjct: 133 IETVEMQSADSWIGARDAAVVTLLYGCGLRISEALGLRGRDWPMGESLRITGKGGKERIV 192

Query: 236 ELPDGFMKLLAM-------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA-- 286
            +       + +        P  +   F       +N        +    + G+  +A  
Sbjct: 193 PVLPVARDAVGIYLQLCPFEPEPEAPIFRGARGGALNPRLIQKVTEKARLQLGLPATATP 252

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           H +R   AT    AG     +    G  ++   + YT
Sbjct: 253 HAMRHSFATHLLAAGGDLRAIQELLGHASLSTTQAYT 289


>gi|116328183|ref|YP_797903.1| tyrosine site-specific recombinase XerC [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116330907|ref|YP_800625.1| tyrosine site-specific recombinase XerC [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
 gi|116120927|gb|ABJ78970.1| Tyrosine site-specific recombinase XerC [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116124596|gb|ABJ75867.1| Tyrosine site-specific recombinase XerC [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
          Length = 311

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 45/260 (17%), Positives = 93/260 (35%), Gaps = 22/260 (8%)

Query: 85  GSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVE----SRKHTPSSAIQFLT 138
            + + N+  ++           +    D  ++    IRS        +     S  + L+
Sbjct: 31  KNYSQNTINAYSIDLKFFFEFCEKEQLDILQVEPVDIRSYFSYLAKEQDLDRRSQSRKLS 90

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS------QP 192
           S+R  +K  +R + +  NP   +  PK + E  + +   + ++   F +E +      + 
Sbjct: 91  SLRTFYKVLLRDDQIESNPATRISFPKVRKEVPKNFRINETEEILEFEAERTSEILEIRD 150

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT--------VELPDGFMKL 244
           +   E L  SGLR  +   A +  L  ++  +K    G            V+    +++ 
Sbjct: 151 KAMIEVLYSSGLRVFELVNAKLGSLSKDLTVLKVLGKGQKERFVYFGKEAVDSLRRYLEY 210

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302
             ++    +  F+N   +K+           +  K G  K  + H  R   AT   DAGA
Sbjct: 211 RNVSFPDVKEIFLNQKGKKLTTRGVRYILNERRKKMGWEKKITPHKFRHTFATDLLDAGA 270

Query: 303 TAHELMATYGWKTVDQAETY 322
               +    G  ++   + Y
Sbjct: 271 DIRAVQELLGHSSLSTTQIY 290


>gi|159901675|ref|YP_001547921.1| integrase family protein [Herpetosiphon aurantiacus ATCC 23779]
 gi|159894714|gb|ABX07793.1| integrase family protein [Herpetosiphon aurantiacus ATCC 23779]
          Length = 291

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 39/260 (15%), Positives = 82/260 (31%), Gaps = 25/260 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF---LTSMR 141
             L+  ++ ++     Q+ +       R    +  R  +  R     SA      L ++R
Sbjct: 16  RGLSAQTQSAYVQAVRQLAQYFNTPPDRLSDDQLRRYFLYLRTEKQVSASTITVTLCAIR 75

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201
            L++  +++ +    P L   RP +        ++++++            R+    +  
Sbjct: 76  FLYQHTLQRSW----PLLDALRPPKAQPLPVVLSRDEVRAILHQVRTPRH-RVCLSIIYA 130

Query: 202 SGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFMKLLAMTPIGKET----- 254
            GLR  +  R  V ++ +      I+  K      + LP   + +L       +      
Sbjct: 131 CGLRLMEGVRLQVCNIDSARLMLHIQHGKGNKDRYIPLPPPALAMLRAHWRSHQHPRWLF 190

Query: 255 --------FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATA 304
                     I      M+       F      +G+ K  + H +R   AT   +AG   
Sbjct: 191 PSHWVDKALPIAARSVSMSRDGVQRAFLLACQASGMRKHATVHTLRHSWATHLLEAGVNL 250

Query: 305 HELMATYGWKTVDQAETYTK 324
             +    G  +      YT 
Sbjct: 251 RIIQGWLGHTSPTTTAHYTH 270


>gi|110806562|ref|YP_690082.1| putative integrase [Shigella flexneri 5 str. 8401]
 gi|110616110|gb|ABF04777.1| putative integrase [Shigella flexneri 5 str. 8401]
          Length = 319

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 42/235 (17%), Positives = 82/235 (34%), Gaps = 11/235 (4%)

Query: 52  TGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY 111
           +G   K            TL   +  Y K      +   + I++ S    I R   D   
Sbjct: 59  SGHKHKPLTARINSDNSVTLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDAPL 118

Query: 112 RKITTKHIRSGVESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
             ITTK I + +         +SA    +++   F+ A+ + ++  NP  +    K +  
Sbjct: 119 EDITTKEIAAMLNGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNPVAATRAAKSEVR 178

Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229
             R    E ++ +++  S     RLA E  + +G R  D C      + +    ++  KT
Sbjct: 179 RSRLTADEYLKIYQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKT 238

Query: 230 GTIITVE---------LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKA 275
           G  I +          +            +G ET   +  ++ +++   S  +  
Sbjct: 239 GVKIAIPTTLHVDALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSSIYAR 293


>gi|215412737|ref|ZP_03421449.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis
           94_M4241A]
 gi|298526363|ref|ZP_07013772.1| integrase/recombinase xerC [Mycobacterium tuberculosis 94_M4241A]
 gi|298496157|gb|EFI31451.1| integrase/recombinase xerC [Mycobacterium tuberculosis 94_M4241A]
          Length = 298

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 42/267 (15%), Positives = 90/267 (33%), Gaps = 26/267 (9%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHTPSSA---IQFLTSM 140
             +V++R ++      +     D       +T   +RS + +     ++     +  +++
Sbjct: 17  GRSVHTRRAYLGDLRSLFAFLADRGSSLDALTLSVLRSWLAATAGAGAARTTLARRTSAV 76

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS--------QP 192
           +    WAVR+  +A +P   ++ PK +        ++   +  +    G+        + 
Sbjct: 77  KAFTAWAVRRVLLAGDPAARLQVPKVRRTLPAELRQDQALRAMAAAESGAEQGDPLALRD 136

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM---- 247
           RL  E L  +G+R S+ C   V  +      ++   K     TV         L      
Sbjct: 137 RLIVELLYATGIRVSELCGLDVDDIDTGHRLVRVLGKGNKQRTVPFGQPAADALHAWLVD 196

Query: 248 ------TPIGKETFFINNDKQKMNATQFSIWFKA--KATKAGVNKSAHGVRKFSATISAD 299
                 T        +    ++++  Q          A     +   HG+R  +AT   +
Sbjct: 197 GRRALVTAESGHALLLGARGRRLDVRQARTAVHQTVAAVDGAPDMGPHGLRHSAATHLLE 256

Query: 300 AGATAHELMATYGWKTVDQAETYTKGA 326
            GA    +    G  ++   + YT  A
Sbjct: 257 GGADLRVVQELLGHSSLATTQLYTHVA 283


>gi|62912537|ref|YP_227613.1| putative integrase [Haemophilus phage Aaphi23]
 gi|273809608|ref|YP_003344846.1| putative integrase [Aggregatibacter phage S1249]
 gi|31408042|emb|CAD90776.1| putative integrase [Haemophilus phage Aaphi23]
 gi|261410515|gb|ACX80346.1| putative integrase [Aggregatibacter phage S1249]
          Length = 348

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 43/252 (17%), Positives = 84/252 (33%), Gaps = 15/252 (5%)

Query: 83  HWGSLAVNSRISFESY--FDQIIRKSGDFDYRKITT---KHIRSGVESRKHTPSSAIQFL 137
            W       +           + +  GD    +I     K I+           +    L
Sbjct: 70  QWLDEKPKRKQDRNMLYGLVWLDKYLGDKKLNEIDRTLIKFIQYEKAKEGVKARTINAVL 129

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE 197
             +RV+ + AV  +++   P   ++        +R  T+ +  +      E  +P + F 
Sbjct: 130 QQIRVILRAAVEWDWLDKCPA--IKFLPEPKRRVRWLTQHEEIRLIEELPEHLKPIVQFA 187

Query: 198 FLLYSGLRCSDSCRAGVQHLQ----NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE 253
            L  +GLR S+  +     +         + +  KTG  I V L D  ++++       +
Sbjct: 188 IL--TGLRMSNITQLKWSQIDLSKRQAWINSEQSKTGNSIGVPLNDKAIEVIVSQFGKHK 245

Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYG 312
                   + +     +  F+A   +AG+ +   H +R   AT    +G   + L    G
Sbjct: 246 ENVFTYKGKPVRIAN-TKAFRAALQRAGIKDFRFHDLRHTWATRHIMSGTPLYVLQELGG 304

Query: 313 WKTVDQAETYTK 324
           W   D    Y  
Sbjct: 305 WSKSDTVRKYAH 316


>gi|320353143|ref|YP_004194482.1| integrase family protein [Desulfobulbus propionicus DSM 2032]
 gi|320121645|gb|ADW17191.1| integrase family protein [Desulfobulbus propionicus DSM 2032]
          Length = 393

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 64/350 (18%), Positives = 124/350 (35%), Gaps = 35/350 (10%)

Query: 10  FVTKERTRHGKII-YYFRKGHGRRI--RLPYPHESTFIPAYMSA-------LTGSTPKRE 59
           F+ + R+  GK     ++  HGR+I  ++      TF  A  +A       + G +P  E
Sbjct: 33  FIVEVRSTGGKTYALRYKDQHGRQIQHKIGDAKSITFDKARNAAKVLRSQVVLGDSP-AE 91

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFES----YFDQIIRKSGDFDYRKIT 115
              S +  P TL         S  +       + S+++      + ++   G +   +IT
Sbjct: 92  QRKSKKDVP-TLAEFC-----SERYIPFIKGYKRSWKNDDSLLRNHLLPPLGTYRMNEIT 145

Query: 116 TKHIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEY--VAINPCLSVERPKRKTEG 170
              +       +        A + L  ++ +F  A++ E   V +NP + V+     T  
Sbjct: 146 QIMVADLHHGMRANGFASGMANRVLVLLKYIFNLAIKWEVPDVKVNPAVDVK-LYEATAR 204

Query: 171 IRPWTKEDMQQFKSFW--SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-- 226
            R  + E+ Q+       S+ +Q +     LL  G R  +   +  +       S +   
Sbjct: 205 ERYLSIEETQRLLEQLEKSKNTQLKYIAPLLLLLGCRKRELLDSRWEEFDLERRSWRIPM 264

Query: 227 QKTGTIITVELPDGFMKLLAMTPI--GKETFFINNDKQKMNATQFSIWFKAKATKAGV-N 283
            K+G    V L    +++L   P   G      N D +         W       AG+ +
Sbjct: 265 SKSGKARHVPLSLSALEILRQLPRWEGCPYVIPNPDTRLPFVQMHRAW-DNARKAAGLPD 323

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
              H +R   A+   ++G + +E+    G   +   + Y   +    L  
Sbjct: 324 VRMHDLRHSMASNMVNSGRSIYEVAKVLGHSQLKTTQRYAHLSQETLLAA 373


>gi|34558588|gb|AAQ75061.1| putative integrase [Lactobacillus phage JCL1032]
          Length = 370

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 52/362 (14%), Positives = 126/362 (34%), Gaps = 38/362 (10%)

Query: 14  ERTRHGKIIYYFR-----KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
           ++ + GK  +Y R      G  +R+       S       + L  +    +  ++  +  
Sbjct: 10  KKMKSGKYQWYQRYRDPLTGKIKRVTCLLSRGSQQARK-EAELILAQKLADISDARTETN 68

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG-DFDYRKITTKHIRSGVES-R 126
            T+  L   +        +   +     +    ++   G D   + IT   +   ++S  
Sbjct: 69  ITIGELSKLFLDHERERGVKPTTLSVRRTGMSAMLNYFGEDAIAKNITKPMVTKYLQSSL 128

Query: 127 KHTPSSAIQFLTS-MRVLFKWAVRQEYVAINPCLSV----ERPKRKTEGIRPWTKEDMQQ 181
           K   +S +      M  ++ +A+   Y+  NP   +    +  K  +   + +T E++  
Sbjct: 129 KKKSNSTVHVYRVGMSTMYDFAIDYGYLTENPAKGLRIQWKPQKPTSITDKYFTDEELNN 188

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN------NIFSIKTQKTGTI--- 232
             +        RL F+F+  +G+R  ++     +++ +              K+ +    
Sbjct: 189 LFAVIDRPDYLRL-FKFMYLTGMRFGEATGLQFKNIHDQYADITGTMWANGIKSDSPKTL 247

Query: 233 ---ITVELPDGFMKLL------AMTPIGKETFFINNDKQ-KMNATQFSIWFKAKATKAGV 282
               +V LP   ++++             +  FIN  K         +++ K K+ +AG+
Sbjct: 248 ASFRSVFLPKQAIEIVEWFKQHDRNAEPDDFIFINQLKHVPFKMNTVALYLKNKSKEAGI 307

Query: 283 NK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRI 339
           ++  + H  R    +  A+ G   H +    G    +   E Y       ++     ++I
Sbjct: 308 DRKITTHFFRHTHISKLAEQGVPLHVIQKRVGHIKAETTREIYLHVT--KKMQEDMEKQI 365

Query: 340 SS 341
           + 
Sbjct: 366 ND 367


>gi|312913689|dbj|BAJ37663.1| integrase [Salmonella enterica subsp. enterica serovar Typhimurium
           str. T000240]
          Length = 336

 Score =  103 bits (256), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 56/305 (18%), Positives = 111/305 (36%), Gaps = 19/305 (6%)

Query: 26  RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG 85
           R   G+RIR  +  +S    AY   +  +   +E+ + P      L  LI+ +     + 
Sbjct: 24  RGTSGKRIRRKFNRKSE-AQAYEKYVLTNFHDKEWQDKP-ADRRLLSDLIALWW---SYH 78

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFLTSMRV 142
               N   S++   ++I R+ G+    ++T   +     SR H   +  +  +   +M  
Sbjct: 79  GKNHNYGDSYKKRLEKINREMGEPRVYELTRNFLMKYRASRLHDGVSAGTVNRDFCTMSS 138

Query: 143 LFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201
           +F+  +  +E+   NP   V + + +   +   ++E+++      +     R      L 
Sbjct: 139 MFRLLIDMEEFHHENPFHKVRKLRLENTEMSFLSEEEIRDLLMALT--GDDRRVVVLCLN 196

Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK 261
           +G R  ++     +H+ +N  +    KTG   TV +       +     GK   F  N  
Sbjct: 197 TGARWGEASNLKAEHVISNRVTFVKTKTGPARTVPISQEIADYILTRKSGK--LFDTNY- 253

Query: 262 QKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
                 +     +         ++ H +R   AT     G     L    G  T++Q  T
Sbjct: 254 -----ERVRDVLRKVKPDLPRGQALHVLRHTFATHFMINGGNIITLQRILGHTTIEQTMT 308

Query: 322 YTKGA 326
           Y   A
Sbjct: 309 YAHFA 313


>gi|238063996|ref|ZP_04608705.1| tyrosine recombinase xerD [Micromonospora sp. ATCC 39149]
 gi|237885807|gb|EEP74635.1| tyrosine recombinase xerD [Micromonospora sp. ATCC 39149]
          Length = 336

 Score =  103 bits (256), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 48/281 (17%), Positives = 85/281 (30%), Gaps = 42/281 (14%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKIT-------TKHIRSGVESRKHTP----SSA 133
             L+ N+  S+    ++ +    D     +          H+          P    SSA
Sbjct: 36  RGLSANTLASYRRDLERYLATLTDAGIGDLASVAAGVVEAHLARLRAGDDGHPPLAVSSA 95

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW------- 186
            +  +++R L ++A+R+     +P   V  P       R    + + +            
Sbjct: 96  ARAASAVRGLHRFALREGLAGADPSRDVRPPAPPRRLPRALAVDQVVRLLETAGPVTAAG 155

Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN----NIFSIKTQKTGTIITVELPD 239
                  + R   EFL  +G R S++  A +  L          +   K G    V +  
Sbjct: 156 DGAPLALRDRALLEFLYGTGARISEAVGAAIDDLDGLDTGEATVLLRGKGGRSRLVPVGG 215

Query: 240 GFMKLLAM-----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---- 284
              + L                G    F+N     +         +  A +AG+      
Sbjct: 216 YAAEALRAWLVRGRPALVAAGRGTPAVFVNVRGGTLTRQGAWTILRRAAERAGLPVDGAN 275

Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
             S H +R   AT   D GA    +    G  +V   + YT
Sbjct: 276 AVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQVYT 316


>gi|300723768|ref|YP_003713075.1| int (fragment) [Xenorhabdus nematophila ATCC 19061]
 gi|297630292|emb|CBJ90943.1| Int (fragment) [Xenorhabdus nematophila ATCC 19061]
          Length = 333

 Score =  103 bits (256), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 49/290 (16%), Positives = 100/290 (34%), Gaps = 35/290 (12%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSG---- 122
           TL+  +  +            +R  + S      +   + G    ++++   + S     
Sbjct: 5   TLRQHMQHFLDHLDALRYTRETRAHYRSNLREFVRWCDERGITTAQQVSFPQLESWQQHM 64

Query: 123 -----VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW--- 174
                   R    S+ I+ LTS+R LF+W V++ ++  NP   +  P+R+     PW   
Sbjct: 65  VAQKNRHGRPIAASTVIKKLTSVRHLFRWLVKRRHLRYNPARELALPRRERRL--PWGML 122

Query: 175 TKEDMQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQK 228
            + + ++  +          + R   E L  SG+R S+  R  +  L     +  ++  K
Sbjct: 123 NEPETRRVLAMTGSDNPLSVRDRAILETLWSSGIRRSELKRLQLSELDLAGGMLFVRQGK 182

Query: 229 TGTIITVELPDGFMKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKAT 278
                 V L +     +                    F++     +     +   +    
Sbjct: 183 GRQDRVVPLGESARHWVQRYLNDVRPRLVWAKDPGYLFLSQQGSALAEGTLTQIVRNALH 242

Query: 279 KAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           +A ++K    H  R   AT     GA    + A  G  +++  + YT+ A
Sbjct: 243 RADIDKPGGCHLFRHGMATQMLKNGADTRHIQAILGHASLESTQIYTRVA 292


>gi|222151085|ref|YP_002560239.1| tyrosine recombinase XerC protein [Macrococcus caseolyticus
           JCSC5402]
 gi|222120208|dbj|BAH17543.1| tyrosine recombinase XerC protein [Macrococcus caseolyticus
           JCSC5402]
          Length = 290

 Score =  103 bits (256), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 37/260 (14%), Positives = 89/260 (34%), Gaps = 23/260 (8%)

Query: 85  GSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVESRKHT---PSSAIQFLTS 139
            + + ++  ++++   Q I   +    D+R    +  R+ + S+ +     ++  + +++
Sbjct: 17  RNFSDHTVTAYKNDVLQFIAFLEQEQLDFRTFEYRDARNYLVSQYNKGLERTTVSRRISA 76

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLA 195
           +R  + +    +    NP + +  PK+K      + +++M    +          + +  
Sbjct: 77  LRSFYGFLYDGD--ESNPFVQLVHPKQKKYLPEFFYEKEMTLLFNSIDMSKPFAVRDKFI 134

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLLA 246
            E L  +G+R S+            + ++K    G    +          L D +M    
Sbjct: 135 LEMLYATGMRVSEFIELKSDAFDLGLMTVKVMGKGRKERIIPYGAYAHRSLLD-YMDFRN 193

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATK--AGVNKSAHGVRKFSATISADAGATA 304
              I  +   IN     + A   +        +  A  +   H +R   AT   + GA  
Sbjct: 194 SMTITHDYLLINQRGGPLTARGLTYILDMLIKRSSADGHIHPHKLRHTFATHLLNNGADL 253

Query: 305 HELMATYGWKTVDQAETYTK 324
             +    G   +     YT 
Sbjct: 254 RTVQELLGHVNLSTTSKYTH 273


>gi|237722726|ref|ZP_04553207.1| site-specific recombinase [Bacteroides sp. 2_2_4]
 gi|293373709|ref|ZP_06620056.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|301311822|ref|ZP_07217744.1| tyrosine type site-specific recombinase [Bacteroides sp. 20_3]
 gi|317473969|ref|ZP_07933248.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
 gi|229448536|gb|EEO54327.1| site-specific recombinase [Bacteroides sp. 2_2_4]
 gi|292631364|gb|EFF49995.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|300829924|gb|EFK60572.1| tyrosine type site-specific recombinase [Bacteroides sp. 20_3]
 gi|316909811|gb|EFV31486.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
          Length = 381

 Score =  103 bits (256), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 47/231 (20%), Positives = 75/231 (32%), Gaps = 15/231 (6%)

Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC---LSVERPKRKTEGIRP 173
           +H       +  +P SA  ++         AVR E +  NP     + ER K        
Sbjct: 149 QHTYKTRWDKPLSPKSAADYVGYFSTALNAAVRAEVIPENPIMTLAATERIKVPESKREY 208

Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT----QKT 229
            T ++++            + A+ F  Y GLR SD      + +  +    +     QKT
Sbjct: 209 LTIDEIKVLIDTECPREDVKRAYLFACYCGLRLSDVYALRWKDIVQDGEQYRMSTVMQKT 268

Query: 230 GTIITVELPDGFMKLL--AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA- 286
            T I + L    ++ L            F     +       + W       AG+NK   
Sbjct: 269 TTPIYLPLSRHAVRWLPERNGAEDGLHVFAGLPAEPNINKVLAKWM----ATAGINKKIT 324

Query: 287 -HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
            H  R   AT+    GA  +      G   V   + Y K  D  ++   N 
Sbjct: 325 YHTSRHTFATMMLTLGADLYTTSKLLGHANVKTTQIYAKIVDSKKVEAVNL 375


>gi|194446257|ref|YP_002041137.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194404920|gb|ACF65142.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
          Length = 359

 Score =  103 bits (256), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 50/287 (17%), Positives = 97/287 (33%), Gaps = 34/287 (11%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--- 126
           T+   I  Y       SL+VN+     +    +  K G+    ++TT+HI   +ES    
Sbjct: 75  TVSAWIDRYEVLLQRRSLSVNTYKIRSNQLATVREKMGEIILAEVTTRHIAKFLESWITE 134

Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
            K+T + A++  + +  +F+ A+ + ++  NP  +   P+ K    R      ++ + + 
Sbjct: 135 GKNTMAGAMR--SVLSDMFREAIVEGHIVKNPVEATRIPEIKVARERL----QLETYNAT 188

Query: 186 WSEGSQPRLAF----EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241
            +        F    +  L +G R  D        + +N   +   KTG  I + L    
Sbjct: 189 RAAAEHMPAWFPLAMDLALVTGQRREDIVNMKFSDVFDNRLYVTQIKTGMKIAIPLSLTL 248

Query: 242 MK--------LLAMTPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNKS-- 285
                     +     + +  F I      N+    ++    +  F      +GVN S  
Sbjct: 249 EAPGLRLGTVIDRCRLVSRTDFMISAGIRKNSPTGNIHPDGLTKTFVKARKASGVNFSNN 308

Query: 286 ---AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
               H +R   A                 G  + +  + Y    D  
Sbjct: 309 PPTFHEIR-SLAGRLYKNEHGEVFAQKLLGHTSANTTKLYLDERDDK 354


>gi|332170984|gb|AEE20239.1| integrase family protein [Krokinobacter diaphorus 4H-3-7-5]
          Length = 274

 Score =  103 bits (256), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 48/268 (17%), Positives = 97/268 (36%), Gaps = 18/268 (6%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           +   +++  R S    +  +   +S+++Y     R     D   + T  +R  +  +++T
Sbjct: 4   SFNTILTAKRYSDSTVTTYIGLLVSYQNYLGD-SRPLERLDLSYLIT-TLRDFILKKEYT 61

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            ++  Q ++++ + +K A+RQE       L    P+R        +  +++      +  
Sbjct: 62  FNTQKQLISAVSLYYKEALRQEIDLS--SLRPRSPQRV--LPDILSTYEVKSIL-HHTTN 116

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAM 247
            + + A   +   GLR  +     +  +    N  +IK  K      +  P+    LL  
Sbjct: 117 LKHKAALTTIYALGLRVGELVDLRLAAMDKKRNTITIKAAKGKKDRQLPFPESLKPLLRQ 176

Query: 248 -----TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
                 P   +  F    K +  A      F+A   KA + K  + H +R   AT   D+
Sbjct: 177 YYKEYKPT--DYLFEGQSKPQYTAASLRSVFRASCKKARIKKKVTLHSLRHAYATHLMDS 234

Query: 301 GATAHELMATYGWKTVDQAETYTKGADR 328
           G     +    G   +     YT    R
Sbjct: 235 GTDLRMIQELLGHSDIKTTMIYTHVTTR 262


>gi|332178648|gb|AEE14337.1| Tyrosine recombinase xerC [Thermodesulfobium narugense DSM 14796]
          Length = 306

 Score =  103 bits (256), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 37/249 (14%), Positives = 85/249 (34%), Gaps = 16/249 (6%)

Query: 90  NSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVR 149
           + R   +S+F+    +  D    +    +  + + S  +  SS  + L +++    ++ +
Sbjct: 33  SYRSDIKSFFNFFKDRINDTVDIEKLLLYYSNYLISNNYKASSLERKLVAIKQFLIFSFQ 92

Query: 150 QEY-VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGL 204
           + Y     P   +  PK+        ++ D+    +F S       +  L F+ L ++G+
Sbjct: 93  EGYYKGKIP--DIVLPKKDKRLPFFLSRSDIFNIFNFISNSKQFTIRDLLIFKMLYFTGM 150

Query: 205 RCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLL--------AMTPIGKETF 255
           R S+     + ++      I+   K      +      + L                E  
Sbjct: 151 RISELLNLKIDNVNFESMDIRVLGKGSKERIIPFHRDILDLFNSYLIFRQESLKPKCENI 210

Query: 256 FINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKT 315
           F+N+  + ++        K       +    H  R   AT     GA+   +    G ++
Sbjct: 211 FVNSKGKPLSRQYIWKMCKKVGNFLNLELHPHIFRHSLATHLLSGGASIKTIQEILGHES 270

Query: 316 VDQAETYTK 324
           +   + YT 
Sbjct: 271 ISTTQIYTH 279


>gi|292656400|ref|YP_003536297.1| XerC/D-like integrase [Haloferax volcanii DS2]
 gi|291370519|gb|ADE02746.1| XerC/D-like integrase [Haloferax volcanii DS2]
          Length = 310

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 48/280 (17%), Positives = 99/280 (35%), Gaps = 28/280 (10%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRSGVESRKHT---P 130
           I+E+ K       +  +  ++     +    +  +         HI   V          
Sbjct: 17  INEFIKRKQVTGRSERTLNAYSRILKKFYHEEFPELRPEDTEVFHIEDYVMRLAQRDLSQ 76

Query: 131 SSAIQFLTSMRVLFKWAVRQ---EYVAINPCLSV--ERPKRKTEGIRPWTKEDMQQFKSF 185
           ++  ++L S+   F +A+++   E +  NP   V  E PK+  +     T E+ +Q    
Sbjct: 77  NTKRRYLESLSAFFSYAMKRPRFEKITGNPAAVVLEEIPKQVRDRPDCATWENGRQIIHN 136

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMK 243
            S+  + +     L  +G R +++    V  L        ++ +K G    V +    +K
Sbjct: 137 ISDP-RDKTVATVLAKTGCRLTEALEIQVDDLMLEEGFIRLRKRKGGKQTVVPIDQETIK 195

Query: 244 LLAMTP-----IGKETFFINNDKQKMNATQFSIWFKAKATKAGV----------NKSAHG 288
            +          G +  F++   ++++ T      K  A +AG+            + H 
Sbjct: 196 AIQRFQFIRNGRGTDYLFVSIRGERVSKTSVQRAVKKAAEEAGIMEPGEDRFHKKFTPHT 255

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
            R    T+  + G   H L    G    +  + YT+  DR
Sbjct: 256 YRTVFTTLMRNQGMPDHILRYIRGDSNDETMDIYTR-VDR 294


>gi|83311040|ref|YP_421304.1| integrase [Magnetospirillum magneticum AMB-1]
 gi|82945881|dbj|BAE50745.1| Integrase [Magnetospirillum magneticum AMB-1]
          Length = 370

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 63/343 (18%), Positives = 105/343 (30%), Gaps = 38/343 (11%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMS---ALTGSTPKREYINSPRKKPTTL 71
           R R      +     GR   L     + F  A  +    +      R          TT 
Sbjct: 18  RCRRDGYYSWVNPTDGREYGLGRDKRAAFAQAVEANLQIMALCDKPRLVDRLNGTTDTTF 77

Query: 72  KWLISEYRKSAHWGSLA-----VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
             L + YR+      L        + +S       I  + G     +ITTK     +   
Sbjct: 78  ADLAALYRQEID-KRLERAKIVKATAMSMRQRLATIETRWGATKVAQITTKDAADMLREY 136

Query: 127 KH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
           +       A    + M  +F  AV   +   NP    +    + E  R  T ED +   +
Sbjct: 137 EDAGKERMAQSMRSFMLDVFNHAVAIGWRETNPVAVTKAVTVEVERSR-LTLEDFRAIHA 195

Query: 185 FWSEGSQPRLA--FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
           + +    PR+A   E  L +G R  D    G + + +    +   K G  +++ +     
Sbjct: 196 YAAANMAPRVARAMELALITGQRRDDLRNMGPKDISDGYLWVVQSKGGARVSIPVGIRLQ 255

Query: 243 ---------KLLAMTPIGKETFFINN-------DKQKMNATQFSIWFKAKATKAGVNKS- 285
                           +  + F  +N           + A   S+ F     KAG+  S 
Sbjct: 256 VVNWSLSEVVANCRDAVLSKHFLHHNAIVGKARPGDPIRAQTISLEFAEARDKAGITGST 315

Query: 286 ------AHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
                  H +R  +A +  D    A    A  G K+ + A  Y
Sbjct: 316 GKTPPTFHEIRSLAARLWTDERGEAFA-KALLGHKSAEMAALY 357


>gi|299538026|ref|ZP_07051312.1| hypothetical protein BFZC1_18510 [Lysinibacillus fusiformis ZC1]
 gi|298726608|gb|EFI67197.1| hypothetical protein BFZC1_18510 [Lysinibacillus fusiformis ZC1]
          Length = 293

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 39/261 (14%), Positives = 91/261 (34%), Gaps = 11/261 (4%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           ++ E+  S    + +V +  ++  Y ++      +  +  +++  I    +      S A
Sbjct: 19  VVGEFLLSLKLANCSVETVRTYRWYLEKFFENREE-SFLTLSSDTIHQWFQKYDGVKSDA 77

Query: 134 IQFLT--SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS- 190
              L    +   + + V +E +  +P  +   P+      +   K ++ + +    E + 
Sbjct: 78  TVKLRLCILSSFYNFCVIEELLEKSPIKTRWLPRLPQPIPQYLGKSELAKTRKQTEESTL 137

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAMTP 249
           + R+  EF+L SG R S+        +   N  +    K   I  V   +    L+    
Sbjct: 138 RNRVLIEFMLTSGCRVSEIVGLNQSDVDLENRTARVIGKGKKIREVHFSEKCAILMERYL 197

Query: 250 IGK----ETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGAT 303
             +    E  F+  + +++              +A ++K    H +R   AT     GA 
Sbjct: 198 TDEVKKCEALFVTANGKRLGVRGVQYIVHDIGEEAQLDKRLFPHRLRHTFATELLSKGAE 257

Query: 304 AHELMATYGWKTVDQAETYTK 324
              +    G   +   + Y +
Sbjct: 258 LSFIADELGHTDIRTTQIYAR 278


>gi|319409399|emb|CBI83043.1| integrase/recombinase XerC [Bartonella schoenbuchensis R1]
          Length = 332

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 46/289 (15%), Positives = 86/289 (29%), Gaps = 29/289 (10%)

Query: 88  AVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVESR---KHTPSSAIQFLTSM 140
           A         +   +    G      D   +    +R+ +  R   K +  S  + + S+
Sbjct: 44  AQAYERDTRQFLIFLCHHLGHEVTCKDLADLRVVDLRAYLAHRRTLKISARSLSRNVASL 103

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT--------KEDMQQFKSFWSEGSQP 192
           R  F +  R+  V       +  PK      +P          K + QQ    W   ++ 
Sbjct: 104 RSFFNYLSREGIVDTLAAKLIRTPKHPKLLPKPLNVQAALHIIKPENQQEDEPWII-ARN 162

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI--KTQKTGTIITVELP----DGFMKLLA 246
                 L   G+R S++     +   +   +      K G    V L     +     L 
Sbjct: 163 VAVLALLYGCGMRISEALALTPEQFSDPEITSLSVIGKGGKTRLVPLIKTVYEMVETYLK 222

Query: 247 MTP---IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAG 301
             P   +  +  F       +         +    + G+ ++   H +R   AT     G
Sbjct: 223 CCPYPLVSTQPMFRGVRGGPLQPAIIQRLVQNLRARLGLPETTTPHALRHSFATHLLSRG 282

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGI--KNSRRISSVVDSDDP 348
                +    G   +   + YT       L +  K   R S V++S+ P
Sbjct: 283 GDLRTIQELLGHACLSTTQVYTHIDTDRLLEVYQKAHPRASKVIESEKP 331


>gi|284006959|emb|CBA72231.1| phage integrase [Arsenophonus nasoniae]
          Length = 341

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 56/315 (17%), Positives = 103/315 (32%), Gaps = 15/315 (4%)

Query: 17  RHGKIIYY-FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75
           + G+I +Y F   + +RIR      +      ++AL  ++  R           T +  +
Sbjct: 10  KRGEIWWYSFTTPNKQRIRKSAKTTNQQEAKELAALEYNSYWRNE-KLGDVSFHTWQEAV 68

Query: 76  SEYRKSAHWGSLAVNSRISFE-SYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
             +           N  + +   + DQ + K+   D  K     I+   +       +  
Sbjct: 69  LLWLNEK--PERKENRNMLYGLRWLDQYLGKTKLIDINKYLIDEIKKTKQISGVKNRTVN 126

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
             L  +RV+ K A     +   P   ++  K  T  IR  T+ + ++      E  +P  
Sbjct: 127 AVLQQIRVVLKCAYEHGLLDKIP--PIKLLKEPTRRIRWLTEYEEKRLMVELPEHLKP-- 182

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGFMKLLAMTPI 250
              F L +GLR S+        +  N           KT   I + L    + ++     
Sbjct: 183 IVNFALNTGLRMSNITNLKWSQVDINRRQAWIHADESKTNQAIGIPLNQAALTIIREQQG 242

Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMA 309
               +       ++       W +    +AG+ +   H +R   AT    AG   + L  
Sbjct: 243 HHREYVFTYQGNRIKNAGAKGW-RKAVYRAGLGDFHFHDLRHTWATRHIMAGTPLYVLQE 301

Query: 310 TYGWKTVDQAETYTK 324
             GW   D    Y  
Sbjct: 302 LGGWSKADTVRKYAH 316


>gi|255692292|ref|ZP_05415967.1| putative integrase/recombinase y4rA [Bacteroides finegoldii DSM
           17565]
 gi|260622025|gb|EEX44896.1| putative integrase/recombinase y4rA [Bacteroides finegoldii DSM
           17565]
          Length = 413

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 48/300 (16%), Positives = 98/300 (32%), Gaps = 23/300 (7%)

Query: 46  AYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK 105
            Y++  T   P   Y+   RK    +  ++++Y        L+  +   +E  F   +R 
Sbjct: 86  NYLTDRTIQKPVVRYVI--RKFSGEIGGIMTKYLHLLEEQRLSPKTIDGYEHVFSYFLRH 143

Query: 106 SGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINP--CLSVER 163
               +  +I+       +     + +S  + L +MR   ++   Q+ +  N    +   R
Sbjct: 144 LSLRNVSRISDIGEDDVLTFISSSQNSKQRVLATMRAFCRYLYEQKLINKNIDYVIGRNR 203

Query: 164 PKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HL 217
              K +    +T E++ Q +S        G +           GLR SD           
Sbjct: 204 YIVKEKLPSTYTCEEVLQIESSVNQSTPVGKRDYAMLLLATRLGLRSSDIAGLQFSNLDW 263

Query: 218 QNNIFSIKTQKTGTIITVELPDGFMKLL------AMTPIGKETFFINN-------DKQKM 264
             NI  +   KT   I + L     + +             +  F+++       +   +
Sbjct: 264 DRNIIRLIQYKTKREIELPLLKDVGEAIINYVKYGRPSSSSKQIFLSSLAPYNPVNGAVV 323

Query: 265 NATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           + +   I   ++       K  H +R   A+     G +   +  T G KT      Y +
Sbjct: 324 SLSVRKIICHSRIDTRDRKKGPHAMRHTLASQLLRNGISLPVISETLGHKTTQTTMGYLR 383


>gi|134287379|ref|YP_001110762.1| putative integrase [Clostridium phage phiC2]
 gi|93117217|gb|ABE99507.1| putative integrase [Clostridium phage phiC2]
          Length = 404

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 55/366 (15%), Positives = 122/366 (33%), Gaps = 57/366 (15%)

Query: 15  RTRHGKIIYYFRKG--HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           R R  K  YYF  G   G+R ++     +T   A  S                +   +L 
Sbjct: 22  RKRGKKWYYYFDAGIVDGKRKKVERVGGNTKKEAEKSLRDAINEYENAGIVFDETNMSLS 81

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
             ++ + K     +   N++ S+ +  +  I  + G    + I    I+  + ++     
Sbjct: 82  DYLNFWYKEYVLLNCKYNTQESYRNLIENHIEPRLGKCKLKSINPAIIQEFLNNKSKETY 141

Query: 132 SAIQ--------FLTSMRVLFKWAVRQ-----EYVAINPC------LSVERPKRKTEGIR 172
           +            L ++ V+   A++      + +  NP        +V + K +++  +
Sbjct: 142 TQNGEEKHYTKGVLKAIYVVLNAALKSAVYPYKLIKENPVQYASIPKNVLKVKNESD-NK 200

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ--- 227
             T ++  +    + + +   +      ++G+R  +       ++   NNI  ++     
Sbjct: 201 TITLDEFNKILEIYPKNTNIYIPLLIGFHTGMRKGEILGLCWDNVDLDNNIIKVRKNLIK 260

Query: 228 -----------KTGTII-TVELPDGFMKLLAMTPIG------------KET----FFINN 259
                      KT T I  +++ D   ++L    +             KET         
Sbjct: 261 RKVSEFELASPKTKTSIRDIKIGDTLSRILKEEKLNQKKQKIKIGKWYKETEYDWVCRKK 320

Query: 260 DKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
           D   +N        +    K  +N + H +R   AT+  + GA    +    G   +   
Sbjct: 321 DGSFVNHNNIDAAIRTINKKLNINFNFHCLRHTHATLLLENGANVKYIQQRLGHSQLSTT 380

Query: 320 -ETYTK 324
            +TY+ 
Sbjct: 381 MDTYSH 386


>gi|312111961|ref|YP_003990277.1| integrase [Geobacillus sp. Y4.1MC1]
 gi|311217062|gb|ADP75666.1| integrase family protein [Geobacillus sp. Y4.1MC1]
          Length = 396

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 55/375 (14%), Positives = 116/375 (30%), Gaps = 69/375 (18%)

Query: 11  VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIP-----AYMSALTGSTPKREYINSPR 65
           + K++TR     YYFR   G+        + +F P          L     +       +
Sbjct: 6   LIKKKTRG----YYFRIDVGKDPITGKRRQQSFGPFKTKTEAKKELIKIRTQVMEGTYFK 61

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE 124
                 +  I+E+ ++ +    +  +  +     D  +I        + I T+ I +   
Sbjct: 62  PSAQDFESFINEWFETVYCQDKSETTIETRRYIIDGHLIPYFKKMPIKDINTRVIDTFFA 121

Query: 125 SRKHTPSSAIQ-------------------FLTSMRVLFKWAVRQEYVAINP---CLSVE 162
             +       +                     + +   FK AV    + +NP      + 
Sbjct: 122 ELRKNGRYPRKKTEHEEKENKDLSESYLHIIFSLLNQAFKKAVVWGLIKVNPMENAQKIS 181

Query: 163 RPKRKTEGIRPWTKEDMQQF-KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--- 218
               K++  R WTKE++  F ++   +G      F   + +G+R  +      + +    
Sbjct: 182 VKNNKSKKNRAWTKEEVNIFLEAASKKGLVA--PFLVGVVTGIRRGELLGLKWEDIDFKN 239

Query: 219 -------------NNIFSIKTQ-KTGTI--ITVELPDGFMKLLAMTPI------------ 250
                              K + KT +     + +PD  +++L                 
Sbjct: 240 KTITINGTLYRRKGEGLKYKPKTKTDSSDNRVIPIPDAIVEVLRKEKALQDKTREKLGNS 299

Query: 251 --GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHEL 307
              +   FIN+  + ++    +  F+       V + + HG+R  +AT+    G     +
Sbjct: 300 YNSENFVFINDKGKPIDPDYLTRKFRETVKTLNVKQINLHGLRHTAATLLMKLGVHVKIV 359

Query: 308 MATYGWKTVDQAETY 322
               G   V     Y
Sbjct: 360 SDILGHSRVQVTLDY 374


>gi|119668679|emb|CAL23817.1| integrase [Staphylococcus aureus]
          Length = 391

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 61/377 (16%), Positives = 126/377 (33%), Gaps = 57/377 (15%)

Query: 23  YYFRKGHGRRI---RLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT--TLKWLISE 77
           + +R   G+     +  Y  ++ F     +       +R+  N     P+  T K +  +
Sbjct: 12  WRYRISLGKNTETGKYEYISKTGFKRKSDAKHQAEMIERQLRNGDYIAPSSSTFKQVADD 71

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA--IQ 135
           + K      + V+S  + +      I +      + I     +  V+      S      
Sbjct: 72  WLKQYA-NDVKVSSVRARKKAIQHAIERFNTKPIQTIKKHDYQRFVDDMSAQYSKNYVDS 130

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT--------EGIRP-WTKEDMQQFKSFW 186
            + S  ++FK+A     +   P   ++RPK+K         E  +    K+++ QF    
Sbjct: 131 IVASTNMIFKYAYDMRLIKAMPSDGIKRPKKKVSVEELEDIEIHKKFLEKDELFQFLEVA 190

Query: 187 SEGSQPRLAFEF---LLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ-------------- 227
                P+ +FE    L Y+G+R  +        +   NN  SI                 
Sbjct: 191 KYHHSPQNSFEIFTTLAYTGMRAGELLALKWSDIDFENNTISITKTYYNPNNNKKHYQIL 250

Query: 228 --KTGTII-TVELPDGFMKLLAMTP------------IGKETFFINNDKQKMNATQFSIW 272
             KT + I  + +    ++LL                +     F + +   +   + S W
Sbjct: 251 TPKTESSIGKISVDPHVIQLLKDYKIYVQDTWKNELYVDNNFVFTDLNGYPLVIKKLSTW 310

Query: 273 FKAKATKAGV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADR 328
            +A   K  +   + S H  R     +  +AG    E+      K ++     Y K  + 
Sbjct: 311 IQAIMKKTDITNKHISTHSFRHTHCALLIEAGVHIKEIQERLRHKDINTTMNIYAKITNS 370

Query: 329 IRLGIKNSRRISSVVDS 345
            +     S++ S ++++
Sbjct: 371 YKK--DASQKFSQLMEN 385


>gi|82751630|ref|YP_417371.1| integrase [Staphylococcus aureus RF122]
 gi|82657161|emb|CAI81601.1| integrase [Staphylococcus aureus RF122]
          Length = 390

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 64/379 (16%), Positives = 130/379 (34%), Gaps = 61/379 (16%)

Query: 23  YYFRKGHGRRIR---LPYPHESTF----IPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75
           + +R   G+ ++     Y   S F       + + +     +     +P    +T + + 
Sbjct: 11  WRYRISLGKDVKTGKYKYISNSGFKRKSDAKHHAEMVERQLRTGEYIAP--STSTFQQVA 68

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA-- 133
            E+  S +   + V+S  + E      I +  +   + I     +  V       S    
Sbjct: 69  DEWL-SQYANEVKVSSVRAREKAIHHAIERFNNKPIQTINKHEYQRFVNDISAQYSKNYV 127

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT--------EGIRP-WTKEDMQQFKS 184
              +TS  ++FK+A   + + I P   ++RPK+KT        E  +    K+++ QF  
Sbjct: 128 DSIITSTNMIFKYAYDMKLIRIMPSEDIKRPKKKTSVEELEDTEIHKKFLEKDELFQFLE 187

Query: 185 FWSEGSQPRLAFEF---LLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ------------ 227
                  P+ +FE    L Y+G+R  +        +   NN  +I               
Sbjct: 188 VAKNHHSPQNSFEVFCTLAYTGMRAGELLALKWSDIDFENNTINITKTYYNPNNNKKQFQ 247

Query: 228 ----KTGTII-TVELPDGFMKLLAMTPIG------------KETFFINNDKQKMNATQFS 270
               KT + I  + +    +KLL    +                 F + +   +   +  
Sbjct: 248 ILTPKTESSIGKIPVDPHVIKLLKNYKVDVQDTWKNGLYVDNNFVFTDVNGYPLVIKKLQ 307

Query: 271 IWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGA 326
           +W KA   K  +     S H  R     +  +AG    E+      K ++     Y K  
Sbjct: 308 LWIKAILKKTDITNKQISTHSFRHTHCALLIEAGVHIKEIQERLRHKDINTTMNIYAKIT 367

Query: 327 DRIRLGIKNSRRISSVVDS 345
           +  +     S++ S ++++
Sbjct: 368 NSYKK--DASQKFSKLMEN 384


>gi|238758491|ref|ZP_04619668.1| Phage integrase [Yersinia aldovae ATCC 35236]
 gi|238703395|gb|EEP95935.1| Phage integrase [Yersinia aldovae ATCC 35236]
          Length = 300

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 50/277 (18%), Positives = 95/277 (34%), Gaps = 27/277 (9%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           T+   +  Y +      LA N+          I ++ GD     +TTKHI + + +    
Sbjct: 16  TVASWLKRYSEILKRRELAENTMKMRVLQIGYINQQFGDRPIETVTTKHIANFINTYVDN 75

Query: 130 PSS--AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
             S  A+   + +  +F+ A+    ++ NP  +   P  K +  R       + +++   
Sbjct: 76  GKSSMAVNLRSVLSDVFREAIADGLISTNPVEATRTPSPKVKRERLDYAAFCKIYEAAGQ 135

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
           + +  +L+    L +G RC D  +     + N    I   KT   I + L       +  
Sbjct: 136 QQNWVQLSLALALTTGQRCDDVRQLKRSDVHNGKLWIVQSKTKMQIAISL--SLRLEIMN 193

Query: 248 TPIG----------KETFFI----NNDKQK---MNATQFSIWFKAKATKAGV-----NKS 285
           T +G          K  + I     +  +K   +NA   +  F        +       S
Sbjct: 194 TTVGEIIEKCLNNSKSEYLISSSSKSSGRKPGALNADSLTKAFVKALKATDLVYDISPPS 253

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
            H +R   A+   +A           G K++     Y
Sbjct: 254 FHEIR-SLASRLYEAEYGKEFAQKLLGHKSMKMTNVY 289


>gi|258515632|ref|YP_003191854.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771]
 gi|257779337|gb|ACV63231.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771]
          Length = 335

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 54/271 (19%), Positives = 89/271 (32%), Gaps = 31/271 (11%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
           +  +++  W     N +    + F+Q I     +  YR I    +   +E   + P +  
Sbjct: 51  NRLKRTIQWHQ--ENIQAFKRAMFEQGIELNLNNITYRTIRNNLVLYAIEKWGNQPQTVN 108

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GS 190
             + +++  F + V + Y+A NP   VE+ K     I    K+ +++  +   +    G 
Sbjct: 109 MRIRTLKQFFDFLVSEGYLAENPAARVEKLKTANTLIVALNKDQVRRLLAVPDKDTLTGF 168

Query: 191 QPRLAFEFLLY--------SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
           +       LL         SGLR SD       H   N   +   K     TV L     
Sbjct: 169 RDYTIMLLLLDTGLRLSEISGLRISDL------HFTENFIKVM-GKGAKERTVPLQGKLK 221

Query: 243 KLL------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG---VNKSAHGVRKFS 293
           K L             +  FI  D   +            + KAG   +  S H  R   
Sbjct: 222 KTLREYLQHRGKEPDHDFVFITIDNNPIKNRTIQDRLDIISKKAGVTEIRTSPHTWRHTF 281

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324
           A +    G  A  L    G  + +    Y K
Sbjct: 282 ARMYILNGGDAFSLKTILGHNSWEMVHRYVK 312


>gi|188590854|ref|YP_001795454.1| site-specific tyrosine recombinase xerc [Cupriavidus taiwanensis
           LMG 19424]
 gi|170937748|emb|CAP62732.1| site-specific tyrosine recombinase [Cupriavidus taiwanensis LMG
           19424]
          Length = 349

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 52/313 (16%), Positives = 100/313 (31%), Gaps = 50/313 (15%)

Query: 52  TGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI----IRKSG 107
           + +    E           L WL    R S     LA ++   +      +     + + 
Sbjct: 4   SSAPADGEAPPPDPLVTRYLDWL----RGS---RKLAEHTLSGYARELRVLQAHAAQHAP 56

Query: 108 DFDYRKITTKHIR---SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEY-VAINPCLSVER 163
                 + T HIR   + + +     +S  + L++ R  + WA R  + V++NP   V  
Sbjct: 57  GVALLALQTHHIRNFAARLHAAGLVGTSIGRALSAWRGFYLWAARHGHGVSVNPVDGVRA 116

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGS-----QPRLAFEFLLYSGLRCSDSCRA------ 212
           P+      +  + E      +    G+     + +  +E    SGLR S+  +       
Sbjct: 117 PRSGHALPKALSVEHAVALVA-HPAGTDAEALRDQAVYELFYSSGLRLSELVQLDLRYAE 175

Query: 213 -------GVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM-------------TPIGK 252
                  G   L     ++ T K     TV +    +  L                P   
Sbjct: 176 ADGYRSSGWLDLAGAEVTV-TGKGSRRRTVPVGGRAIAALQAWLAVRDGLLRPGAAPEDA 234

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMAT 310
              F+    ++++     +  K +A +AGV      H +R   AT    +      +   
Sbjct: 235 HALFLGPRGRRLSMRTVQLRLKQQALRAGVPADVHPHMLRHSFATHMLQSSGDLRAVQEM 294

Query: 311 YGWKTVDQAETYT 323
            G  ++   + YT
Sbjct: 295 LGHASISTTQVYT 307


>gi|27375981|ref|NP_767510.1| site-specific integrase/recombinase [Bradyrhizobium japonicum USDA
           110]
 gi|27349120|dbj|BAC46135.1| bll0870 [Bradyrhizobium japonicum USDA 110]
          Length = 329

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 54/324 (16%), Positives = 103/324 (31%), Gaps = 24/324 (7%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK-PTTLKW 73
           R   G+     R+      R       T    +   L     +  ++   R    TTL  
Sbjct: 5   RKLRGRWQAQVRRRGVP-PRAKSFDTKTAAERWARDLEAEADRSGWVADTRAAEKTTLGE 63

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT--PS 131
           L+S Y            S  +  +    +          K+T+  +    + R  T  P+
Sbjct: 64  LLSRYANEVTPAKRGAVSEKARINSI--VRCPISHRTLAKLTSSDVAGYRDERLKTVAPA 121

Query: 132 SAIQFLTSMRVLFKWAVRQ--EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
           + ++ L ++    + A R+   +V  NP   V RP       R   + + Q+       G
Sbjct: 122 TVVRELNTISHAIEVATREWGLWVPRNPVKLVRRPPVPRGRTRRLKEGEEQRLLDACDRG 181

Query: 190 SQPRL--AFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELP----DGF 241
             P L       + +G+R  +      +H+     +  +   K G    V L        
Sbjct: 182 RTPLLKPLIILAIETGMRRGELLDLRWEHIDLKRGVAHLPLTKNGDSRDVPLSCRAVQTL 241

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADA 300
            +L +        F        M      + F+    +AG+ +   H +R  + +   + 
Sbjct: 242 QELRSAGVRHDRVF-------SMTGNSVRLAFEHLRVRAGMSDLHFHDLRHEAISRLFEK 294

Query: 301 GATAHELMATYGWKTVDQAETYTK 324
           G    E+ A  G + +   + YT 
Sbjct: 295 GLNIAEVSAISGHRELKMLQRYTH 318


>gi|254780882|ref|YP_003065295.1| site-specific tyrosine recombinase XerC [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040559|gb|ACT57355.1| site-specific tyrosine recombinase XerC [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 328

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 76/230 (33%), Gaps = 21/230 (9%)

Query: 115 TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
             +   S   ++K    S  + L+ ++   K+  +++    +  L++   K+     R  
Sbjct: 70  EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129

Query: 175 TKEDMQQFKSFWSEGS---------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225
            ++            +         +       L   GLR S++     Q++ ++  +++
Sbjct: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189

Query: 226 TQKTGTIITV-ELPDGFMKLL----AMTPIG-----KETFFINNDKQKMNATQFSIWFKA 275
            Q  G  I +  L     K +     + P       +   F     + +N   F  + + 
Sbjct: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249

Query: 276 KATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
                G+  S  AH +R   AT     G     + +  G   +   + YT
Sbjct: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299


>gi|160872703|ref|ZP_02062835.1| site-specific recombinase, phage integrase family [Rickettsiella
           grylli]
 gi|159121502|gb|EDP46840.1| site-specific recombinase, phage integrase family [Rickettsiella
           grylli]
          Length = 336

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 36/226 (15%), Positives = 83/226 (36%), Gaps = 13/226 (5%)

Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
           ++    +K + ++  + L  +R +   A ++ +V   P +       + E  R  TK++ 
Sbjct: 109 QAKRSEKKVSNATINRLLEVIRAILNNAFKKGWVEKIPSI---SLFDEIERDRWLTKDEA 165

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN----NIFSIKTQKTGTIITV 235
           ++             AF  L  +GLR ++      +++         S    KT   I V
Sbjct: 166 ERLLKELPPHLSDMAAFSLL--TGLRKANVTGLKWRNVDLVRRHAFVSASQSKTNKAIPV 223

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSA 294
            L    + ++         F    + + M     +  ++    +AG+ +   H +R   A
Sbjct: 224 PLSTEAVAIIRKQVGKHIEFVFTYEGKPM-KQCCTRSWRKALKRAGIEDFRWHDLRHTWA 282

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
           +     G + +EL    GW + +  + Y     +     + + R++
Sbjct: 283 SWHVQNGTSLYELQRLGGWSSYNTVQRYAHLNSQQL--QEAAERVA 326


>gi|205352422|ref|YP_002226223.1| integrase [Salmonella enterica subsp. enterica serovar Gallinarum
           str. 287/91]
 gi|207856607|ref|YP_002243258.1| integrase [Salmonella enterica subsp. enterica serovar Enteritidis
           str. P125109]
 gi|205272203|emb|CAR37061.1| putative integrase [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|206708410|emb|CAR32714.1| putative integrase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|326627474|gb|EGE33817.1| putative integrase [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 9]
          Length = 359

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 50/287 (17%), Positives = 97/287 (33%), Gaps = 34/287 (11%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--- 126
           T+   I  Y       SL+VN+     +    +  K G+    ++TT+HI   +ES    
Sbjct: 75  TVSAWIDRYEVLLQRRSLSVNTYKIRGNQLATVREKMGEIILAEVTTRHIAKFLESWITE 134

Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
            K+T + A++  + +  +F+ A+ + ++  NP  +   P+ K    R      ++ + + 
Sbjct: 135 GKNTMAGAMR--SVLSDMFREAIVEGHIVKNPVEATRIPEIKVARERL----QLETYNAT 188

Query: 186 WSEGSQPRLAF----EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241
            +        F    +  L +G R  D        + +N   +   KTG  I + L    
Sbjct: 189 RAAAEHMPAWFPLAMDLALVTGQRREDIVNMKFSDVFDNRLYVTQIKTGMKIAIPLSLTL 248

Query: 242 MK--------LLAMTPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNKS-- 285
                     +     + +  F I      N+    ++    +  F      +GVN S  
Sbjct: 249 RATGLRLGTVIDRCRLVSRTDFMISAGIRKNSPTGNIHPDGLTKTFVKARKASGVNFSNN 308

Query: 286 ---AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
               H +R   A                 G  + +  + Y    D  
Sbjct: 309 PPTFHEIR-SLAGRLYKNEHGEVFAQKLLGHTSANTTKLYLDERDDK 354


>gi|119477783|ref|ZP_01617906.1| Phage integrase [marine gamma proteobacterium HTCC2143]
 gi|119448944|gb|EAW30185.1| Phage integrase [marine gamma proteobacterium HTCC2143]
          Length = 346

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 52/334 (15%), Positives = 111/334 (33%), Gaps = 48/334 (14%)

Query: 17  RHGKIIYYFRK--GHGRRI----RLPYPHES-TFI-----PAYMSALTGSTPKREYINSP 64
           R G   ++       GRR+    RL   + +  F+      AY  +  G    +      
Sbjct: 10  REGTPYWWVDLVLPDGRRVCQSTRLKCLNAANEFVIDLKADAYKRSREGIVHDK------ 63

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK---SGDFDYRKITTKHIRS 121
                T +  +  Y            ++ S ++  D + +     GD   R+++   +  
Sbjct: 64  -----TWRQAVVRYLAEN-------ATKKSLQADRDNLKKLDAFVGDLLLRQVSMDSLWP 111

Query: 122 GVESRKH---TPSSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKE 177
            +  R+    T ++  + L  +R +F  A  +  ++   P   +   K     IR   + 
Sbjct: 112 FIHQRRDDGVTDATINRALEVVRRIFHLARDEWCWLERFP--KIRMLKEPKRRIRFLRRP 169

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTII 233
           ++ +      +    R   +F + +G R  +  +     +  +         T K G   
Sbjct: 170 EVNRLLEELPD--HMRPVVQFAVATGCRMGEILKLEWNRVDFDRRVAWLDHGTTKNGDGR 227

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKF 292
            + L +  +  L       + +      + +        +K    +A + N   H +R  
Sbjct: 228 GIPLNNDAVLALRSLHGQHQRWCFTFRGKPI--KAIGSCWKRALERAQIENFRFHDLRHT 285

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            A+    +G +  ELM   GWK+ +    Y   A
Sbjct: 286 WASWHVMSGTSLQELMELGGWKSYEMVLRYAHLA 319


>gi|313764266|gb|EFS35630.1| site-specific recombinase, phage integrase family
           [Propionibacterium acnes HL013PA1]
 gi|313816357|gb|EFS54071.1| site-specific recombinase, phage integrase family
           [Propionibacterium acnes HL059PA1]
 gi|314915743|gb|EFS79574.1| site-specific recombinase, phage integrase family
           [Propionibacterium acnes HL005PA4]
 gi|314917889|gb|EFS81720.1| site-specific recombinase, phage integrase family
           [Propionibacterium acnes HL050PA1]
 gi|314920271|gb|EFS84102.1| site-specific recombinase, phage integrase family
           [Propionibacterium acnes HL050PA3]
 gi|314957876|gb|EFT01979.1| site-specific recombinase, phage integrase family
           [Propionibacterium acnes HL002PA1]
 gi|315098723|gb|EFT70699.1| site-specific recombinase, phage integrase family
           [Propionibacterium acnes HL059PA2]
 gi|315101508|gb|EFT73484.1| site-specific recombinase, phage integrase family
           [Propionibacterium acnes HL046PA1]
 gi|327450593|gb|EGE97247.1| site-specific recombinase, phage integrase family
           [Propionibacterium acnes HL087PA3]
 gi|327454068|gb|EGF00723.1| site-specific recombinase, phage integrase family
           [Propionibacterium acnes HL083PA2]
 gi|328753150|gb|EGF66766.1| site-specific recombinase, phage integrase family
           [Propionibacterium acnes HL025PA2]
 gi|328754011|gb|EGF67627.1| site-specific recombinase, phage integrase family
           [Propionibacterium acnes HL087PA1]
          Length = 420

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 58/373 (15%), Positives = 116/373 (31%), Gaps = 51/373 (13%)

Query: 23  YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSA 82
           +Y + G  +R+R      +         L            PR    TL   ++ +  + 
Sbjct: 27  FYDKNGTKQRVRGRGATRAEATKRLNKNLRQRIDGTRTATGPRGGL-TLNQWVNIWLATK 85

Query: 83  HWGS-LAVNSRISFE-SYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA-IQFLTS 139
                +   +    +  Y   I  K G    +++T + I+  + +      +  +    +
Sbjct: 86  QASEQMKPQTAQQHKIRYKQWIAPKLGSRPVKRLTAEEIQEVIAAGAQQGHAIPVNIFKT 145

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEG-------IRPWTK--EDMQQFKSFWSEGS 190
           M      AV+   V +NP   +  P++++         I  W++  + M ++ +      
Sbjct: 146 MNAALNSAVKAGEVDLNPMKQLTPPRQRSAAGEKDTAHIEYWSRIMDKMCKWLAQPECEL 205

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQ---------------KTGTII 233
             R      +  GLR ++             N  +IK Q               KTG   
Sbjct: 206 HDRYTLTIAMLLGLRRAELLGLTWDCFDECMNKLTIKQQLMRQNDGSYIIQNSTKTGKNR 265

Query: 234 TVELPDGFMK---------LLAMTPIGKETFFINNDKQKMNATQFSIWFKA----KATKA 280
           T+ LP+ + +         L A  P      F+      +  + ++  ++        K 
Sbjct: 266 TLMLPERWKEAFLLQRQKSLTAAAPEWNNLVFLTPAGGPITYSMYNKLWRNTIVTYMAKE 325

Query: 281 GVNK-------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT-KGADRIRLG 332
           G            H  RK  A+  A  G      M+  G  +      YT   AD+ R  
Sbjct: 326 GQEWKEEQHYWRPHTCRKMCASWLAWGGVDIQTAMSILGHSSEAMTLYYTIINADQQRKA 385

Query: 333 IKNSRRISSVVDS 345
           ++    +    + 
Sbjct: 386 LEGLSNVYEHHNV 398


>gi|76799205|ref|ZP_00781383.1| integrase [Streptococcus agalactiae 18RS21]
 gi|76585441|gb|EAO62021.1| integrase [Streptococcus agalactiae 18RS21]
          Length = 382

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 60/343 (17%), Positives = 107/343 (31%), Gaps = 35/343 (10%)

Query: 11  VTKERTRHGKIIY----YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
           +   + ++G   Y    Y     G+R  +     S F     SA       +  +  P+ 
Sbjct: 23  IESYKKKNGTTAYKFLLYAGYVDGKRKYIRR---SGFSTR-QSARAALINLQAELEKPKS 78

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
              T   L  ++ K             +  +    I+ K        I    +++  E  
Sbjct: 79  S-MTFGMLTKQWLKEYEKTVQGSTYLKTERNINKHILPKLDKVTIGDINPLLVQNLTEEW 137

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE---GIRPWTKEDMQQFK 183
                   + L  +R +   AVR  Y++ NP L +  PK K E   G   +T   ++QF 
Sbjct: 138 CSQLKYGGKILGLVRNILNLAVRYGYISNNPALPITAPKIKRERKTGNNFYTLNQLKQFL 197

Query: 184 SFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI----KTQKTGTIITV-- 235
               +         F  L ++G+R  +        L  N  SI       +TG  I V  
Sbjct: 198 ELVEKTDNIEKIALFRLLAFTGIRKGELLALTWDDLNRNTLSINKAVTRTQTGLEIDVTK 257

Query: 236 ------------ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
                       E  +   +L    P     F  +     M  +    W         + 
Sbjct: 258 TKSSDRLISLDDETLEILQQLHETFPSSTFMF-QSESGGIMTPSLPRKWLLQIIKGTDLP 316

Query: 284 K-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTK 324
           + + HG R   A++  ++G +  ++    G   +      YT 
Sbjct: 317 QITVHGFRHTHASLLFESGLSLKQVQHRLGHGDLQTTMNVYTH 359


>gi|288801073|ref|ZP_06406529.1| integrase/recombinase XerC [Prevotella sp. oral taxon 299 str.
           F0039]
 gi|288332007|gb|EFC70489.1| integrase/recombinase XerC [Prevotella sp. oral taxon 299 str.
           F0039]
          Length = 297

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 43/275 (15%), Positives = 98/275 (35%), Gaps = 24/275 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESR-- 126
           +I E+     +    ++ +  S+            + D    +  IT   +RS +ES   
Sbjct: 2   IIDEFLNYLKYEKRRSLLTVESYSEDLKAFQSYFTNLDSLLSWETITANDVRSWIESMMD 61

Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
             +T ++  + L+++R  +++A  +     +P  +V  PK++    +   + +M++    
Sbjct: 62  KGNTATTINRRLSALRSFYRFARLRLAYEKDPAKNVIGPKKQKLLPQFLKEVEMERLLDD 121

Query: 186 WSEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPD 239
             +G      + R+       +G+R S+        +         T K      V   +
Sbjct: 122 VLQGDDFESVRDRIIILLFYETGVRLSELTALNCCDIDLMQRQIKVTGKRNKQRIVPFGE 181

Query: 240 GFMKLLAMTP--------IGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGV 289
                L            I  +  F++N   +M +T      +   ++      +S H +
Sbjct: 182 KLSLELRAYILIRGERENIVDDALFVSNKGSRMPSTTIRRRVEHYLSQVSTLKKRSPHVL 241

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           R   AT+  +  A    +    G +++   E YT 
Sbjct: 242 RHTFATVMLNNDADIESVRHLLGHESLKATEVYTH 276


>gi|148258743|ref|YP_001243328.1| tyrosine recombinase XerD subunit [Bradyrhizobium sp. BTAi1]
 gi|146410916|gb|ABQ39422.1| tyrosine recombinase XerD subunit [Bradyrhizobium sp. BTAi1]
          Length = 308

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 45/278 (16%), Positives = 90/278 (32%), Gaps = 38/278 (13%)

Query: 90  NSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVESRKHTPSSAIQFLTSMRVLF 144
           N+  ++      +            T      +   + +++R    SS  + L++MR LF
Sbjct: 17  NTLDAYRRDLSDLSEFLAGKANSFTTADTQALRDYLADLDTRGFKSSSVARRLSAMRHLF 76

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ-------PRLA-- 195
           ++ + +   + +P   +  PKR     +  +  D+ +  +   E ++        RL   
Sbjct: 77  RFLLSEHIRSDDPAAILSGPKRGRPLPKVLSIGDVDRMLTRAKELTETADASPAQRLRAL 136

Query: 196 -----FEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELP--------DGF 241
                 E L  +GLR S+         + +    +   K      V L         D  
Sbjct: 137 RLYCLLEVLYATGLRVSELVALPRTAARHDARMIVVRGKGNKERLVPLNQASRQAMADYL 196

Query: 242 MKLLAMTPIGKET-----FFINNDK--QKMNATQFSIWFKAKATKAGVNK---SAHGVRK 291
             L A+ P  K +     +   +      +    F+   K  A  +G+     S H +R 
Sbjct: 197 AALDALKPEKKASATFGKWLFPSFGESGHLTRQHFARDLKELAVASGLPARLVSPHVLRH 256

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             A+     GA    +    G   +   + YT   +  
Sbjct: 257 AFASHLLHNGADLRIVQTLLGHTDISTTQIYTHVVEER 294


>gi|253687244|ref|YP_003016434.1| integrase family protein [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251753822|gb|ACT11898.1| integrase family protein [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 374

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 42/242 (17%), Positives = 90/242 (37%), Gaps = 18/242 (7%)

Query: 95  FESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF---LTSMRVLFKWA-VRQ 150
                ++ + +    D  +     + S   +R   P SA      L  +  L+  A V  
Sbjct: 40  RSRLANRNMDEISSIDIAEYRDNRL-SEFNARTQKPISANTVRLELALLSALYNLAKVEW 98

Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA-FEFLLYSGLRCSDS 209
              +INP  +V +P   +   R  T ++ +Q   ++ + +   LA F+  L +G+R  + 
Sbjct: 99  GTCSINPVENVRKPTVSSGRTRRLTTQEERQLTRYFKDKNPELLAIFQIALETGMRQGEI 158

Query: 210 CRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT---PIGKETFFINNDKQKM 264
                +   L+  +  +   K GT   V L     ++L      P  +  +  +      
Sbjct: 159 LSLRWEYTDLRLGVAHLPLTKNGTSRDVPLSSKARQILYGLGERPHHENGYIFS-----Y 213

Query: 265 NATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETY 322
            ++ F   ++       + +   H +R  + +   + G     E+ A  G K+++  + Y
Sbjct: 214 TSSGFKSAWRVALKALAIDDLHFHDLRHEAISRFFELGTLNVMEVAAISGHKSMNMLKRY 273

Query: 323 TK 324
           T 
Sbjct: 274 TH 275


>gi|251780787|ref|ZP_04823707.1| phage integrase family protein [Clostridium botulinum E1 str. 'BoNT
           E Beluga']
 gi|243085102|gb|EES50992.1| phage integrase family protein [Clostridium botulinum E1 str. 'BoNT
           E Beluga']
          Length = 384

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 57/364 (15%), Positives = 118/364 (32%), Gaps = 62/364 (17%)

Query: 17  RHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           + G   Y  Y+   +G + +L      T+  A          +     S      +LK  
Sbjct: 7   KKGNNYYIRYYETINGVKKQLERKGGYTYAEAEKKLNEIIYKQNNGYVSSN---MSLKKY 63

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFD----QIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
           ++ + +     + +  +   +E Y D     II   G+     +   HI   +   ++T 
Sbjct: 64  LNMWLEEYIKTNYSQRT---YEIYLDTVEKHIIPIIGNIKLSDLKVVHIEKYLNHLRNTK 120

Query: 131 S----SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
           +    +A     ++      A++ + +  NPC  VE PK+        T E+ ++     
Sbjct: 121 TINGTTANLHFRNLNTALNRAIKLQLLTNNPCTYVEPPKKNKFKGNYLTVEEFKKIYDSM 180

Query: 187 SEGSQPRLAFEFLLY----SGLRCSDSCRAGVQ---HLQNNIFSIKTQ--KTGTIITV-- 235
              +   ++F+ LL     +G R  + C         L NN  + +    +T +   +  
Sbjct: 181 IVNNYLNMSFKTLLNLAVETGCRRGEMCGLEWDKDIDLHNNTITFRRALIRTNSSGWIMG 240

Query: 236 -----------ELPDGFMKLLAMTPIGKE---------------------TFFINNDKQK 263
                       + D   K L      +                         I  + + 
Sbjct: 241 KLKTQSSYRCLPISDFLSKQLKELKKEQMKNKLLFGEEYCKNIFNGIEYNLVCIQRNGKY 300

Query: 264 MNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE- 320
           M  T  +   +A   +  +NK    H +R  SAT+  ++G     +    G  +++    
Sbjct: 301 MCPTDITDRLRALLKRNEINKKIRWHDLRHTSATLLLESGVDMKTVQERLGHASMNTTSN 360

Query: 321 TYTK 324
            Y+ 
Sbjct: 361 IYSH 364


>gi|86608861|ref|YP_477623.1| phage integrase family site specific recombinase [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|86557403|gb|ABD02360.1| site-specific recombinase, phage integrase family [Synechococcus
           sp. JA-2-3B'a(2-13)]
          Length = 330

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 51/323 (15%), Positives = 106/323 (32%), Gaps = 37/323 (11%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD 110
            +G   +    + P     +L  L +++ +      LA  SR ++    +Q  +      
Sbjct: 5   RSGWAQETHPQSQPTGPVPSLSHLAAQFLQERQ-RDLAPASRRTYRIALEQFAKTCP-VP 62

Query: 111 YRKITTKHIRSGVESRK---------------HTPSSAIQFLTSMRVLFKWAVRQEYVAI 155
             ++   H++S + S K                +P++      +++  F+WA ++ Y+  
Sbjct: 63  LPQVQPAHVQSFLNSLKGRPFRNRSGQRIHPPASPATYNLKRLALQQFFEWASQRGYLQD 122

Query: 156 N-PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE-FLLYSGLRCSDSCRAG 213
             P  ++   +      R   +  +Q+        S    A    +L  GLR  +     
Sbjct: 123 PLPTQAIRPARLPARLPRDLDRLLLQRVLQRAQNHSLRYAALIRLMLECGLRAQELLDLT 182

Query: 214 VQHL----QNNIFSIKTQKTGTIITVELPDGFMKLLA---------MTPIG----KETFF 256
           VQ      + ++  ++  K      V + D   +LL            P       ++  
Sbjct: 183 VQDFQISPEGSLLEVRCGKGSKPRAVAVGDPLSELLQQYLSRERGPCAPTDPLFVSQSRC 242

Query: 257 INNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTV 316
           +    + +                  +++ H  R   AT+  D G     +    G  T 
Sbjct: 243 LAYRGRPLTYDGLRHIVLKLTEPEPGHQTPHQFRHSFATLLLDRGVAPEHIQHLLGHTTA 302

Query: 317 DQAETYTKGADRIRLGIKNSRRI 339
                YT+ A+ +R  I  SR I
Sbjct: 303 AMTMRYTQRAN-LRAAIARSREI 324


>gi|330955110|gb|EGH55370.1| site-specific recombinase, phage integrase family protein
           [Pseudomonas syringae Cit 7]
          Length = 312

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 53/311 (17%), Positives = 114/311 (36%), Gaps = 29/311 (9%)

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119
           YI     +  TL   +  Y       +    ++ +  +   Q+I   G +    ++ + I
Sbjct: 6   YIQRGGSERMTLAMALKRYLAEIS-PTKKPTTQRAEATKAQQLISHLGKYSMAALSAEII 64

Query: 120 RSGVESR------KHTPSSAIQF---LTSMRVLFKWAVRQEY---VAINPCLSVERPKRK 167
            +  ++R      +  P+S       L  +  L+  A+ QE+   ++ NP L++ +P   
Sbjct: 65  ANYRDTRLASITSRGKPTSNNTVRLELAFLSHLYTGAL-QEWGLGLSFNPVLNIRKPSHG 123

Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNN--IFS 223
               R  + E+ ++  +  +  S P L       L +G+R S+        +     +  
Sbjct: 124 EGRDRRLSAEEERRLLAAVNAHSNPMLGWIVRIALETGMRSSEITSLRRHQVDLKKRVVR 183

Query: 224 IKTQKTGTIITVELPD------GFMKLLAMTPIGKETFFINNDKQ--KMNATQFSIWFKA 275
           +   K  +  TV L               + PI  +  F     +  K +A  F+  +  
Sbjct: 184 LSDTKNDSARTVPLTRLATDTFQLAMSNPIRPIDCDLVFFGEPGKEGKRSAYAFTKTWGK 243

Query: 276 KATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIK 334
             TK G+ +   H +R  + +   + G +  E+ A  G K++   + YT    R    + 
Sbjct: 244 LRTKLGMPDLRFHDLRHEAVSRLVEGGLSDQEVSAISGHKSMQMLKRYTHL--RAEDLVS 301

Query: 335 NSRRISSVVDS 345
              ++ +   +
Sbjct: 302 RLDKLEARAPN 312


>gi|217961405|ref|YP_002339973.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus cereus AH187]
 gi|229140651|ref|ZP_04269202.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus cereus BDRD-ST26]
 gi|217065831|gb|ACJ80081.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus cereus AH187]
 gi|228642824|gb|EEK99104.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus cereus BDRD-ST26]
          Length = 376

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 46/304 (15%), Positives = 103/304 (33%), Gaps = 30/304 (9%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHT 129
              L+  + +     S   ++   ++     +++ +  D     I    + +  +     
Sbjct: 63  FSQLVEIWMQEKE-TSCRPSTLYQYKRILRSRVMPEFADKRLSDIKPLTVHNFHQKLLKE 121

Query: 130 PSSAIQFLTS---MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             +     +    ++ +    V  E +  NP    +RPK K +    WT +   +F  + 
Sbjct: 122 GLTTKYISSVDVMLKQILDKGVELEMINSNPAKKAKRPKVKKKAQASWTIDQAMKFMEYA 181

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT------------ 234
                  +AF   L++G+R  +        +  +  +I  Q+T T++             
Sbjct: 182 KIKGSYYIAFVLALHTGMRIGEVLALQWDDINFDNKAIHVQRTLTLVDGKYELGETKTEA 241

Query: 235 ----VELPDGFMKLLAMTPIGK-----ETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284
               + + +  M+ L      K     +      +K+ ++        KA      V   
Sbjct: 242 SNRVIPMTEELMEELLDYQNHKKENSFDLLICTRNKKIVHPYTIRYQMKALCEAIDVPYI 301

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVV 343
             H +R+   TI  D+GA A  +    G   V      YT   +  +  I+ + ++ +V+
Sbjct: 302 RFHDIRRTFTTILIDSGANAKVVAKLLGHTNVSTTLNIYTDTYEERQ--IEATEKLGNVL 359

Query: 344 DSDD 347
            S  
Sbjct: 360 KSGR 363


>gi|315445045|ref|YP_004077924.1| tyrosine recombinase XerC subunit [Mycobacterium sp. Spyr1]
 gi|315263348|gb|ADU00090.1| tyrosine recombinase XerC subunit [Mycobacterium sp. Spyr1]
          Length = 300

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 43/268 (16%), Positives = 92/268 (34%), Gaps = 28/268 (10%)

Query: 85  GSLAVNSRISF----ESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT---PSSAIQFL 137
              + ++R ++     S F  +  +S       +T   +RS + +        S+  +  
Sbjct: 16  RGRSEHTRRAYLGDLRSLFAFLDERSPGTGLGGLTLPMLRSWLAAHAAADTARSTLARRT 75

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS------- 190
           +S++    WAVR+  +  +P   ++ PK +        ++  +        G+       
Sbjct: 76  SSVKTFTAWAVRRGLIGDDPASRLQVPKARRTLPSVLRQDQARDALEAAESGAQQGDPLA 135

Query: 191 -QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLL--- 245
            + RL  E L  +G+R S+ C   V  +  +   ++   K     TV   +     L   
Sbjct: 136 VRDRLVVEMLYATGIRVSELCGLDVDDVDTSRRLLRVLGKGNKQRTVPYGEPAHAALTAW 195

Query: 246 -------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG--VNKSAHGVRKFSATI 296
                    T        +    ++++  Q         +  G   +   HG+R  +AT 
Sbjct: 196 LHEGRPALATADSGPALLLGARGKRLDPRQARTVVHQTVSAVGGAPDIGPHGLRHSAATH 255

Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324
             + GA    +    G  ++   + YT 
Sbjct: 256 LLEGGADLRVVQELLGHSSLATTQLYTH 283


>gi|145224715|ref|YP_001135393.1| site-specific tyrosine recombinase XerC [Mycobacterium gilvum
           PYR-GCK]
 gi|189030078|sp|A4TEB1|XERC_MYCGI RecName: Full=Tyrosine recombinase xerC
 gi|145217201|gb|ABP46605.1| tyrosine recombinase XerC subunit [Mycobacterium gilvum PYR-GCK]
          Length = 300

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 43/268 (16%), Positives = 92/268 (34%), Gaps = 28/268 (10%)

Query: 85  GSLAVNSRISF----ESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT---PSSAIQFL 137
              + ++R ++     S F  +  +S       +T   +RS + +        S+  +  
Sbjct: 16  RGRSEHTRRAYLGDLRSLFAFLDERSPGTGLGGLTLPMLRSWLAAHAAAGTARSTLARRT 75

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS------- 190
           +S++    WAVR+  +  +P   ++ PK +        ++  +        G+       
Sbjct: 76  SSVKTFTAWAVRRGLIGDDPASRLQVPKARRTLPSVLRQDQARDALEAAESGAQQGDPLA 135

Query: 191 -QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLL--- 245
            + RL  E L  +G+R S+ C   V  +  +   ++   K     TV   +     L   
Sbjct: 136 VRDRLVVEMLYATGIRVSELCGLDVDDVDTSRRLLRVLGKGNKQRTVPYGEPAHAALTAW 195

Query: 246 -------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG--VNKSAHGVRKFSATI 296
                    T        +    ++++  Q         +  G   +   HG+R  +AT 
Sbjct: 196 LHEGRPALATADSGPALLLGARGKRLDPRQARTVVHQTVSAVGGAPDIGPHGLRHSAATH 255

Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324
             + GA    +    G  ++   + YT 
Sbjct: 256 LLEGGADLRVVQELLGHSSLATTQLYTH 283


>gi|218249160|ref|YP_002374530.1| integrase domain protein SAM domain protein [Cyanothece sp. PCC
           8801]
 gi|218169736|gb|ACK68470.1| integrase domain protein SAM domain protein [Cyanothece sp. PCC
           8801]
          Length = 314

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 54/297 (18%), Positives = 100/297 (33%), Gaps = 28/297 (9%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWL-ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF 109
           ++GS  K+   +     PT L+ + + E+  +    +L+ NS+ ++       +    + 
Sbjct: 1   MSGSPAKKAPRHQSLTSPTDLQNVRVEEFLAT---KALSPNSQKAYRRELLTFLAIV-NK 56

Query: 110 DYRKITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167
            + +I ++HI         K  PSS  + L+++   F W + + Y   NP L++ + K  
Sbjct: 57  PFARIQSRHIVQYKVQLTEKLAPSSVNRALSALSSFFDW-LEEAYGNPNPTLTIRQNKLP 115

Query: 168 TEGIRPWTKEDMQQFKSFW---SEGSQPR-LAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223
               R  +  +++            ++ R  A    L  GLR  +     +         
Sbjct: 116 LPPARDLSDAELEALFEALENRPNLTKVRDKAVFAALRHGLRAGEVASLNLGDYDGIRLH 175

Query: 224 IKTQKTGTIITVEL----PDGFMKLLAMTPIGKETFFIN-----------NDKQKMNATQ 268
           I+  K  +   V L     D     L       E+F              N   +     
Sbjct: 176 IRVAKDDSSGHVPLDAPGRDAINTYLQQRRETGESFNPTSPLFLSHSPVPNTPPRFGYQG 235

Query: 269 FSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              + K     AGV N + H +R   AT     G            K+    + Y K
Sbjct: 236 IYYFIKELGEMAGVANLTPHRLRHTFATQLLLTGMEPLHARTLTRHKSEVSFKRYAK 292


>gi|110802062|ref|YP_699092.1| tyrosine recombinase XerD [Clostridium perfringens SM101]
 gi|110682563|gb|ABG85933.1| tyrosine recombinase XerD [Clostridium perfringens SM101]
          Length = 290

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 38/269 (14%), Positives = 96/269 (35%), Gaps = 18/269 (6%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISF----ESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127
           K L+S+Y           N+  ++      Y D +  K                 ++   
Sbjct: 2   KDLVSKYEVYLESIGKRKNTVSAYITDVSMYLDFVYEKGLKVSEDSYPLISYVQHLKESH 61

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS--- 184
            +PSS  + + S+R  + + V +E++   P L++++ + + +     T E++ +  +   
Sbjct: 62  KSPSSIQRTIISLRNFYNFLVAEEFLKKVPNLTMKKERIEKKKPLVLTVEEINKIMNSTN 121

Query: 185 -FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242
               +G + +   E +  +G++ S+     ++ +  +   +  + + G    + +     
Sbjct: 122 VLTEKGIRDKALLELMYATGMKVSELISLRIEDINLDSSFVNCRDSRGYERLIPIGKEAK 181

Query: 243 KLLAMTPI-------GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFS 293
           + +    +       G +  F+N   + +         K  A  A + K    +  R   
Sbjct: 182 ESIKRYIVVREDNSKGSDKLFLNMSGEPITRQGVWRIVKEYAVIANIGKDINLNTFRHSF 241

Query: 294 ATISADAGATAHELMATYGWKTVDQAETY 322
           A      GA A  +    G + +   + Y
Sbjct: 242 AVHLLQNGANAKVVQELLGNQVMTYIDMY 270


>gi|51245456|ref|YP_065340.1| integrase/recombinase [Desulfotalea psychrophila LSv54]
 gi|50876493|emb|CAG36333.1| related to integrase/recombinase [Desulfotalea psychrophila LSv54]
          Length = 357

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 51/345 (14%), Positives = 111/345 (32%), Gaps = 31/345 (8%)

Query: 13  KERTRHGKIIY--YFRKGHGRRIRLPYPH---ESTFIPAYMSALTGSTPKREYINSPRKK 67
           K+R     I++  + R       R  +P       +   Y + L         +     +
Sbjct: 5   KKRENKSGIVWEAHIRIKGHTPRRKSFPTKCRAQAWAVEYEALLRAKDAGDPRL----AE 60

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG-DFDYRKITTK---HIRSGV 123
             +L+  + +Y + +       ++          + R  G D     I        +   
Sbjct: 61  QISLQEALDKYAEDSTAAGKKESTLDLESRATRHLTRLLGADRSLADIRPALVAQYQLTR 120

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           +   ++ S+    L  +  ++  A +       NP   + R        R  T  + +  
Sbjct: 121 QKEGYSNSAIRTELAILSKMYNNARKIWGLNIKNPVNDITRVPPDKGNTRFLTTAEAKIV 180

Query: 183 KSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELP 238
                    P+       L+++G+R S+  R   + +     S++    K+G   +V L 
Sbjct: 181 LDESKNIRNPKFYPFVLLLMHTGMRSSEVARLRPEDINFETLSLRIHETKSGIPRSVPLT 240

Query: 239 DGFMKLLAM-TPIGKETFFINNDK-----------QKMNATQFSIWFKAKATKAGVNK-S 285
               ++L   +P     +F+  +            +  ++   S+  K +A+   +    
Sbjct: 241 TKAAEVLQTVSPEATGYYFLKENHLNQKDIRLAPAKAFSSCWRSLRKKMEASGHKIPHFR 300

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
            H +R  +A+    AG    E+    G  T+     YT   D  R
Sbjct: 301 PHDLRHTAASHLLMAGVDIREVADILGHSTLAMTMRYTHLLDSRR 345


>gi|119357861|ref|YP_912505.1| phage integrase family protein [Chlorobium phaeobacteroides DSM
           266]
 gi|119355210|gb|ABL66081.1| phage integrase family protein [Chlorobium phaeobacteroides DSM
           266]
          Length = 419

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 47/294 (15%), Positives = 100/294 (34%), Gaps = 30/294 (10%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRSG----VESR 126
              I  YR+ A       N    + +    + R   G   +  + +  +       +   
Sbjct: 70  DDFIEFYRRYAE----KDNYPK-YANVLPILRRFSLGVIHFASLNSAWLERFKFYLLSLE 124

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             + ++A  +LTS++ + + A R+ Y+  +    V   K+          E ++      
Sbjct: 125 SISQNTAGGYLTSVKTVLRQAFREGYLIEDISAKVPGIKKTDIQRHFLPVEQVEALHKAK 184

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDGFM 242
           S     + AF F  +SGLR SD      + +           + +KT     + L +   
Sbjct: 185 SNNEMIKQAFLFACFSGLRLSDVQALYWEQISQINGAPYIQFRQRKTCQYENLPLSEQAA 244

Query: 243 KLLAM--------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKF 292
            +L           P G +  FI       +  + +   +    +AG+      H  R  
Sbjct: 245 TILQEVRALHAEYAPSGSDKVFIL-----PSRERIAQVLEVWGIRAGLPFKLHFHVSRHT 299

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL-GIKNSRRISSVVDS 345
            AT++  AG   + +    G + +   + Y +  D  +L  ++    +   + +
Sbjct: 300 FATMNLTAGCDLYTVSKLLGHREIKTTQIYGRIVDSKKLDAVQALPVLQGAIGN 353


>gi|167771429|ref|ZP_02443482.1| hypothetical protein ANACOL_02795 [Anaerotruncus colihominis DSM
           17241]
 gi|167666069|gb|EDS10199.1| hypothetical protein ANACOL_02795 [Anaerotruncus colihominis DSM
           17241]
          Length = 395

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 56/361 (15%), Positives = 110/361 (30%), Gaps = 71/361 (19%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW-LISE 77
               +Y+RK               F   Y   ++G + K E   +        +  L   
Sbjct: 12  DGERWYYRKREL----------VGFTVKYGK-VSGFSSKEEACAARDASDAAFQAQLTQL 60

Query: 78  YRKSAH----------------WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK-HIR 120
           Y K                   + +++  ++  ++      I +  D   + ++    I 
Sbjct: 61  YGKHPEDVLFVDFMIFWVYQVYFPTVSYATQSIYDYVVHSYILQISDSAMKLLSVSTKII 120

Query: 121 SGVESRKHTPS--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
           + +  R    S  +A +    +  +F  A+ Q  +A NP  + +R +R    I+  +K++
Sbjct: 121 NDMLVRASKRSNTAAEKVREVLNSVFNGAIAQGLLAENPVENSKRYRRDIPDIKLLSKDE 180

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-------------------- 218
           +  F +         L     L+ GLR  +     +                        
Sbjct: 181 LHLFLNTAKNYEICFLEILLALFGGLRRGEIAGLHISDFDFERETVFIQRQLVWEYDWVD 240

Query: 219 ----NNIFSIKTQKTGTIITV-ELPDGFMKLLAMTP--------------IGKETFFINN 259
               N  + +K  KT + I +  LP     +L                          N 
Sbjct: 241 GKRSNGHWVVKPPKTESGIRILTLPSVIFSVLRRRIQRIEEDKRKYGNRYRDSGYISCNE 300

Query: 260 DKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
                  +  +   K    + G++  SAH +R   AT   + G + H L A  G K+ + 
Sbjct: 301 MGYPREYSFLTAKMKKICLQLGLSVISAHDLRHMFATFLVEKGESIHYLSALMGHKSEET 360

Query: 319 A 319
            
Sbjct: 361 T 361


>gi|163746956|ref|ZP_02154313.1| Phage integrase [Oceanibulbus indolifex HEL-45]
 gi|161380070|gb|EDQ04482.1| Phage integrase [Oceanibulbus indolifex HEL-45]
          Length = 549

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 48/308 (15%), Positives = 104/308 (33%), Gaps = 30/308 (9%)

Query: 39  HESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESY 98
            +      Y             I+     P TL  +   Y     +  +   ++  +   
Sbjct: 226 TDPDERDEYDLI---KLKLERRISELTPDPHTLTAVSEAYFT---FNGIRPFTQAKYRRD 279

Query: 99  FDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI--QFLTSMRVLFKWAVRQEYVAIN 156
             ++    GD   + +TT H++   +    T  +A      T ++ LFK+A ++E + +N
Sbjct: 280 IGRLAALVGDIPVKGVTTAHLKQLRDHLAPTMKAASLHAVFTPIKGLFKYAAQEEILDVN 339

Query: 157 PCLSVERPKRKT----EGIRPWTKEDM----QQFKSFWSEG-----SQPRLAFE----FL 199
           P  ++  P+ K        + +  E+     +   + W         + R A       L
Sbjct: 340 PASALVLPRDKRSIEERKRKKFDPEEACRIDEAISAVWGNPVYGLSDKRREALSQVVRAL 399

Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-ELPDGFMKLLAMTPIGKETFFIN 258
           +++G+R  +  R     +++++  +   KT +   +  L             G  + F +
Sbjct: 400 MFTGMRPIEILRLQPHDVEDHLIRVTDSKTESSTRIVPLHPELKSFPKWVREGGLSTFAS 459

Query: 259 NDKQKMNATQ--FSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWK 314
                +   +  FS   + K +   ++  K+ + +R         AGA      A  G K
Sbjct: 460 VTSDPVGPVRHNFSRLIRTKLSPPILDDRKTLYSLRTTFVNAMRRAGADIQMRRAILGHK 519

Query: 315 TVDQAETY 322
                  Y
Sbjct: 520 EAGAIRHY 527


>gi|16077547|ref|NP_388361.1| phage integrase [Bacillus subtilis subsp. subtilis str. 168]
 gi|221308305|ref|ZP_03590152.1| hypothetical protein Bsubs1_02718 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221312627|ref|ZP_03594432.1| hypothetical protein BsubsN3_02694 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221317550|ref|ZP_03598844.1| hypothetical protein BsubsJ_02653 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221321826|ref|ZP_03603120.1| hypothetical protein BsubsS_02724 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|81556749|sp|P96629|INT_BACSU RecName: Full=ICEBs1 integrase
 gi|1881291|dbj|BAA19318.1| ydcL [Bacillus subtilis]
 gi|2632780|emb|CAB12287.1| putative phage integrase [Bacillus subtilis subsp. subtilis str.
           168]
          Length = 368

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 58/329 (17%), Positives = 98/329 (29%), Gaps = 36/329 (10%)

Query: 25  FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHW 84
           F    G RIR      +      + A      + E     R    +   LIS Y  S   
Sbjct: 19  FDPITGERIRTRPVASTRKEALELEAKLRREFQEERARKSRSV--SFPTLISIYLASCEI 76

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTK---HIRSGVESRKHTPSSAIQFLTSMR 141
            S     +         I       D +KIT +     R  +     +  S    +TS+ 
Sbjct: 77  DSKPNYYQNQKYIINKHISDYFLKSDIQKITHREITDFRKHLMETGLSNKSVNNIMTSLS 136

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP-RLAFEFLL 200
            +F  AV +E +  NPC +V+R     + ++ W  E+ ++F S   +     +  +    
Sbjct: 137 KIFDTAVHEEILKRNPCDNVKRLPLTRKKMKFWRPEEFKKFISLIPQDQLLFKTFYTVAF 196

Query: 201 YSGLRCSDSCRAGVQHLQ---------------NNIFSIKTQKTGTII-TVELPDGFMKL 244
            +GLRC +      + +                +  F + T KT   I  V +    +KL
Sbjct: 197 LTGLRCGEMLALQWKDIDKILLEIDVHKSCTWLDGQFVVTTPKTKNSIRRVSINKKLLKL 256

Query: 245 LAMTP-------------IGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVR 290
           L                    +T+             FS   K     + +     H  R
Sbjct: 257 LERWKEAQEELFNELGIRHSHDTYIFQYKDTPSRKDIFSRKIKYFCKDSDLTPIRLHDFR 316

Query: 291 KFSATISADAGATAHELMATYGWKTVDQA 319
                +    G     +    G  +V   
Sbjct: 317 HSHVALLIHQGEDYITIKERLGHGSVKTT 345


>gi|167993847|ref|ZP_02574940.1| integrase [Salmonella enterica subsp. enterica serovar 4,[5],12:i:-
           str. CVM23701]
 gi|168241496|ref|ZP_02666428.1| integrase [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL486]
 gi|168462602|ref|ZP_02696533.1| integrase [Salmonella enterica subsp. enterica serovar Newport str.
           SL317]
 gi|194448390|ref|YP_002045925.1| integrase [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL476]
 gi|197262125|ref|ZP_03162199.1| integrase [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|194406694|gb|ACF66913.1| integrase [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL476]
 gi|195633903|gb|EDX52255.1| integrase [Salmonella enterica subsp. enterica serovar Newport str.
           SL317]
 gi|197240380|gb|EDY23000.1| integrase [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|205328220|gb|EDZ14984.1| integrase [Salmonella enterica subsp. enterica serovar 4,[5],12:i:-
           str. CVM23701]
 gi|205339104|gb|EDZ25868.1| integrase [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL486]
 gi|312912865|dbj|BAJ36839.1| integrase [Salmonella enterica subsp. enterica serovar Typhimurium
           str. T000240]
 gi|321224515|gb|EFX49578.1| Phage integrase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. TN061786]
          Length = 284

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 48/285 (16%), Positives = 95/285 (33%), Gaps = 34/285 (11%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----K 127
              I  Y       +L+VN+     +    +  K G+    ++TT+HI   +ES     K
Sbjct: 2   SAWIDRYEVLLQRRNLSVNTYKIRSNQLATVREKMGEIILAEVTTRHIAKFLESWITEGK 61

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           +T + A++  + +  +F+ A+ + ++  NP  +   P+ K    R      ++ + +  +
Sbjct: 62  NTMAGAMR--SVLSDMFREAIVEGHIVKNPVEATRIPEIKVARERL----QLETYNATRA 115

Query: 188 EGSQPRLAF----EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
                   F    +  L +G R  D        + +N   +   KTG  I + L      
Sbjct: 116 AAEHMPAWFPLAMDLALVTGQRREDIVNMKFSDVFDNRLYVTQIKTGMKIAIPLSLTLRA 175

Query: 244 --------LLAMTPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNKS---- 285
                   +     + +  F I      N+    ++    +  F      +GVN S    
Sbjct: 176 TGLRLGTVIDRCRLVSRTDFMISAGIRKNSPTGNIHPDGLTKTFVKARKASGVNFSNNPP 235

Query: 286 -AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             H +R   A                 G  + +  + Y    D  
Sbjct: 236 TFHEIR-SLAGRLYKNEHGEVFAQKLLGHTSENTTKLYLDERDNK 279


>gi|308069238|ref|YP_003870843.1| Site-specific recombinase XerC [Paenibacillus polymyxa E681]
 gi|305858517|gb|ADM70305.1| Site-specific recombinase XerC [Paenibacillus polymyxa E681]
          Length = 318

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 37/277 (13%), Positives = 92/277 (33%), Gaps = 25/277 (9%)

Query: 91  SRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS---SAIQFLTSMRVLFKWA 147
           ++ ++     Q +R   +    ++   H+ S +   +   +   +  +   ++   FK  
Sbjct: 40  TQKNYMGDVKQFLRTLREKPLDQVKKIHVMSYLSKAREGGAGDSTRNRKHAAVNSFFKAL 99

Query: 148 VRQEYVAINPCLSVERPKR-KTEGIRPWTKEDMQQFK--SFWSEGSQPRLAFEFLLYSGL 204
              E  + NP   +++ K  K        ++D+  F         ++    F  ++Y GL
Sbjct: 100 QEFELCSTNPAAGIKKAKTEKNRMPVYLDEKDIHPFLLAVEGKYANRNMAIFLLMVYMGL 159

Query: 205 RCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG--------FMKLLAMTPIGKETF 255
           R  +     V        ++    K     T+ +P+           + L      ++  
Sbjct: 160 RVGEVHSLNVSDYSRERRTLDVFGKGRKWRTLPVPEAVCDFVEHALEERLTPWRGKEDAM 219

Query: 256 FINNDKQKMNATQFSIW----FKAKATKAGVNK----SAHGVRKFSATISADAGATAHEL 307
           F++   +++            F+       + +    S+H +R   AT+    GA    +
Sbjct: 220 FVSQKGRRLAVRTIQQIATETFERFQQDKSIERREAYSSHKLRHTFATMLLRKGADLRTV 279

Query: 308 MATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
               G  ++     YT   +R +   K   ++   + 
Sbjct: 280 QELLGHSSIQTTTVYTHVTNREK--EKAMDKLDIQIP 314


>gi|23014445|ref|ZP_00054261.1| COG0582: Integrase [Magnetospirillum magnetotacticum MS-1]
          Length = 394

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 57/347 (16%), Positives = 113/347 (32%), Gaps = 31/347 (8%)

Query: 25  FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN--------SPRKKPTTLKWLIS 76
           +R G  +R R+       +  A      G+  +   +         + R  P T++ L  
Sbjct: 47  YRIGGRQR-RITIGSYPDWSVAAARTEAGNLKREVDLGNDPMGERHADRAAP-TMRDLWD 104

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQII------RKSGDFDYRKITTKHIRSGVESRKHTP 130
            Y++  H    A  S+      +++++       K GD  +  I   H    +   + TP
Sbjct: 105 RYKRD-HLPRKAARSQADETMMWEKLVLPTLGKHKVGDVTHTDIEALH--RDITVSRGTP 161

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
             A + +  +R  F  A+R E++  NP    +    + +  R  + E++ +  +  +   
Sbjct: 162 VRANRVIEVVRRAFNLAIRWEWIEKNPASG-QLRNPEEKRQRYLSPEELSRLSAALTAHH 220

Query: 191 QP--RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT----QKTGTIITVELPDGFMKL 244
           +P    A   L+ +G R S+   A  +    +           K      V +    + L
Sbjct: 221 EPVSADAIRMLMLTGARKSEVLGATWEMFDLDAGVWTKPSAHTKQRKEHRVPVSANALTL 280

Query: 245 LAMT--PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAG 301
           L            F      +        W  A    A +     H +R   A++    G
Sbjct: 281 LKRIRETAEGPYVFPGKGGDQPLTDVKRSW-AAVCKAADITGARIHDLRHSFASLLVSGG 339

Query: 302 ATAHELMATYGWKTVDQAETYTKGADR-IRLGIKNSRRISSVVDSDD 347
           A+   + A  G   V   + Y    D  +R    +  +   +     
Sbjct: 340 ASLPIIGAMLGHTQVQTTQRYAHLYDEPLRAAADHVGKTIDMAGEKK 386


>gi|255004532|ref|ZP_05279333.1| integrase/recombinase ripx (xerC) [Anaplasma marginale str.
           Virginia]
          Length = 311

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 38/276 (13%), Positives = 92/276 (33%), Gaps = 28/276 (10%)

Query: 73  WLISEYRKSAHWGSLAVNSRIS-FESYFDQIIRK-SGDFDYRKITTKHIRSGVESR---- 126
           WL  E R S +  +      +  + S   +   +     + +++ +   RS +  R    
Sbjct: 16  WLREERRYSPNTVAAYERDIMDFYRSVCGEPCERSVSLQEVQELRSAEFRSWLADRFKQG 75

Query: 127 KHTPSSAIQFLTSMRVLFKWAV-RQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQ 181
           K + S+A + ++ +R  F++   +    +    +   +P  +    +   +  M    ++
Sbjct: 76  KQSASNA-RAISVVRSFFRYLHHKCGMKSS--VVFNTKPIVRRSLPKVLEEPQMRKVMEE 132

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241
            +       +       L   GLR S++       L+ +   +   K      + +    
Sbjct: 133 PEDLHWTHRRDLAVSALLYGCGLRISEAVNIKFCDLRQDELRV-LGKGSKERVIPILPWV 191

Query: 242 MKLLA-----------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHG 288
             ++                  E  F+     +++ T F+   K    + G+ ++   H 
Sbjct: 192 RCIIDEYVASCPHQRVHGASSTEYVFVGLRGGRLSRTYFAYRMKGLRRRIGLPETTTPHT 251

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +R   AT     GA    +    G  ++   + YT 
Sbjct: 252 LRHSFATHLFLEGADIRVVQELLGHASLATTQVYTH 287


>gi|313125477|ref|YP_004035741.1| site-specific recombinase xerd [Halogeometricum borinquense DSM
           11551]
 gi|312291842|gb|ADQ66302.1| site-specific recombinase XerD [Halogeometricum borinquense DSM
           11551]
          Length = 310

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 41/276 (14%), Positives = 96/276 (34%), Gaps = 27/276 (9%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQII-RKSGDFDYRKITTKHIRSGVE---SRKHTP 130
           I+E+  S      +  +   +     +       + D   +   H+   +     R    
Sbjct: 17  INEFLTSKTTTGRSHRTINEYSRTLQRFFHEHFPELDPEDVEVHHVEQYLRILVERDLAQ 76

Query: 131 SSAIQFLTSMRVLFKWAVRQ---EYVAINPCLSV--ERPKRKTEGIRPWTKEDMQQFKSF 185
           ++  ++L S+   + WA+++   E +  NP   V  E PK+  +     T E+ ++    
Sbjct: 77  NTKRRYLESLSSFYAWAMKRPRYEDITGNPAAVVLEEVPKQIHDRPDCATWENAEKIVHA 136

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMK 243
             +  + +     L  +G R +++     + L  ++    +  +K G    + + D  ++
Sbjct: 137 IDDP-RDKTVAVVLAKTGCRVTEALTITREDLLLEDGFIRLTNRKGGKTTVIPVDDETVR 195

Query: 244 LLAMTP----IGKETFFINND-KQKMNATQFSIWFKAKATKAGV----------NKSAHG 288
           ++           E  F ++    ++   +     +  A K GV            + H 
Sbjct: 196 MIQRLQFIDQNTSEYLFASSRTGNQLTRERIRRKVREAAVKTGVMEEGETRFHKKFTPHT 255

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            R    T+  + G   H L    G    +  + YT+
Sbjct: 256 FRTVFTTLMRNQGMPDHILQYIRGDSESETIDIYTR 291


>gi|319899487|ref|YP_004159584.1| integrase/recombinase XerD [Bartonella clarridgeiae 73]
 gi|319403455|emb|CBI77026.1| integrase/recombinase XerD [Bartonella clarridgeiae 73]
          Length = 312

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 45/286 (15%), Positives = 97/286 (33%), Gaps = 33/286 (11%)

Query: 72  KWLISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVES 125
             +I  + +  +     +V +  +++        K   +     + +      + S +++
Sbjct: 4   SAVIDRFLEMMSAERGASVRTLFAYQHDLQWAQNKLSSYSLSFFSAQREDLINLLSLMQT 63

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
                +S  + L+++R  F++   +     +P   ++ P++     +  +++ + +   F
Sbjct: 64  AGCAATSQARRLSTLRQFFQFLYAEGLRGDDPSSDIDSPRQGRPLPKIISEDAVTKLLDF 123

Query: 186 WSEGSQP--------------RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
               +                ++  E L  +GLR S+     VQ ++     I  +  G 
Sbjct: 124 AQLETDQAEYGSQEYFRALRFQVLLEMLYATGLRISELVSLPVQAVRRKEQFILVRGKGE 183

Query: 232 IITVELPDG-----FMKLLAMTPIGKET----FFINNDKQKMNATQFSIW-FKAKATKAG 281
              V L          K L +   GK+      F         A QF     K  A +AG
Sbjct: 184 KERVVLLSEKARQILSKWLVLRDQGKDAKSFYLFPARSSTGYIARQFVARGLKDLAKRAG 243

Query: 282 V---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +   N S H +R   A+     GA    +    G   +   + YT 
Sbjct: 244 IQSENFSPHVLRHAFASHLLQNGADLRAVQHLLGHCDISTTQVYTH 289


>gi|52841304|ref|YP_095103.1| integrase, phage related [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
 gi|52628415|gb|AAU27156.1| integrase, phage related [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
          Length = 393

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 63/361 (17%), Positives = 125/361 (34%), Gaps = 33/361 (9%)

Query: 19  GKIIYYFR---KGHGRRIRL-PYP-HESTFIPAYMSALT-----GSTPKREYINSPRKKP 68
           G   +++R    G  +++ L  YP         Y++        G  P         K+ 
Sbjct: 34  GNKSWFYRFSMNGKRQKMTLGKYPAISLKQAREYLAKAQSLKEQGINPIENTKLEKLKED 93

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--R 126
            T   LI  + ++    +      I ++    +II   GD    K+ TK I   ++   +
Sbjct: 94  NTFSKLIQSWYENYAVKNRKQPRPIKYQ-IDSEIIPLLGDTVLDKLQTKDITIALDKIVQ 152

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV---ERPKRKTEGIRPWTKEDMQQFK 183
           +  P  A + L++++ +  +AV + Y+  NP  ++   +    +    R  + E+++   
Sbjct: 153 RGAPIHANRILSTIKQVLNYAVSRGYIQYNPATNIRSRDIGGIEKPRERVLSPEEIRIIW 212

Query: 184 SFWSEG-----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT----QKTGTIIT 234
            F            RLA + ++ +G+R  +   A                   K G  + 
Sbjct: 213 KFLESDKSQMSESARLAIKVIILTGVRTGEIRLAQWHQFDFEQSLWTIPPEHSKGGITVK 272

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQ---KMNATQFSIWFKAKATKAGVN-KSAHGVR 290
           + L +   KLL        + F+         M+        K    + G+   +AH +R
Sbjct: 273 IHLSELTKKLLLQFKEQSVSPFVIPGITIDVPMSKDALPRAIKRIQNRVGIPEWTAHDLR 332

Query: 291 KFSATISADAGA-TAHELMATYGWKTVDQAETYTKGA---DRIRLGIKNSRRISSVVDSD 346
           +  AT   ++       +    G K      TY K      R       +  I+ ++ S 
Sbjct: 333 RTFATQLGESLNIDPVVIEKCLGHKMPRIMATYNKNEMLPQRKEALDSWANHIARLISSK 392

Query: 347 D 347
           D
Sbjct: 393 D 393


>gi|317477406|ref|ZP_07936636.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
 gi|316906434|gb|EFV28158.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
          Length = 239

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 69/201 (34%), Gaps = 11/201 (5%)

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
            Q + +++  ++  + QE      C  V R KR+       +KE++++         +  
Sbjct: 23  NQRINAIKFYYEKVLGQERR----CYKVNRAKREKTLPDVLSKEEIKKILDATVTDLRFF 78

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLL---AMT 248
             F  L  +GLR S+        +  +     ++  K        L    MK L      
Sbjct: 79  CMFSILYSAGLRISELLELKPGDINESRSLIRVRQGKGKKDRYTLLSKPLMKKLTEYNRL 138

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHE 306
              K   F +   +    +  S   KA A +AG+ K    H +R   AT   + G     
Sbjct: 139 YKPKVWLFEHRPGEPFTESIVSKRLKAAAREAGITKRIYPHLLRHSFATHLLEQGTDIKI 198

Query: 307 LMATYGWKTVDQAETYTKGAD 327
           +    G   +   E Y   AD
Sbjct: 199 VKELMGHNNIKTTERYVHIAD 219


>gi|229188211|ref|ZP_04315287.1| DNA integration/recombination/invertion protein [Bacillus cereus
           BGSC 6E1]
 gi|228595231|gb|EEK52975.1| DNA integration/recombination/invertion protein [Bacillus cereus
           BGSC 6E1]
          Length = 382

 Score =  102 bits (255), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 50/319 (15%), Positives = 94/319 (29%), Gaps = 40/319 (12%)

Query: 45  PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR 104
                A+     K            T    + E+ K   +  L   +    ++Y   +I+
Sbjct: 46  REAHDAMLILKAKMLSGERSDLSKLTYAAYVDEWMKERTFH-LQETTYEIHKTYIANVIK 104

Query: 105 -KSGDFDYRKITTKHIRSGVESRK----HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL 159
            + G F  R+I   H++  V        ++P++       +    K A   + +  NP +
Sbjct: 105 PRLGHFQMREIEPIHMQKFVNELAIDIGYSPATVHLIYRIVSASLKKAKVLKLIDENPTI 164

Query: 160 SVERPK-RKTEGIRPWTKEDMQQFKSFWS---EGSQPRLAFEFLLYSGLRCSDSCRAGVQ 215
            +  PK RKT  I  WT E++  F +        ++  +     L +G+R  +      +
Sbjct: 165 GITLPKLRKTSEINVWTLEEVNHFINEGKNVYRSTRMYICCVIALLTGMRQGEIMGLRWK 224

Query: 216 HLQ--NNIFSIKT-----------QKTGTII-----TVELPDGFMKLLAMTPIGKET--- 254
            +   N I  I+             K    I      ++L              +     
Sbjct: 225 DIDFENRIIYIRQTLTQSGKIKVGAKNNASIRNVHFPIKLIGELELHRETVKKERLYHGK 284

Query: 255 -------FFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHE 306
                           +      I F     K G+ K   H +R   AT+          
Sbjct: 285 DYEDNNLVICARKGNPLIPKNGRIEFYNLTEKLGLPKIRFHDLRHTHATMLIQQNVNVKL 344

Query: 307 LMATYGWKTVDQA-ETYTK 324
           +    G   +     TY+ 
Sbjct: 345 ISERLGHTDIQTTLNTYSH 363


>gi|282882640|ref|ZP_06291251.1| phage integrase family protein [Peptoniphilus lacrimalis 315-B]
 gi|281297516|gb|EFA90001.1| phage integrase family protein [Peptoniphilus lacrimalis 315-B]
          Length = 327

 Score =  102 bits (255), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 42/277 (15%), Positives = 98/277 (35%), Gaps = 14/277 (5%)

Query: 59  EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH 118
           +   S ++K T+ +  +  +  +      +  S   ++S  + ++ +    D ++I T  
Sbjct: 37  DVTESKQQKKTSEQNFVELFLSAKRIEGCSEKSLKYYKSTIEAMLDEL-KKDVKRIVTDD 95

Query: 119 IRSGV----ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
           IR  +    E +K +  +       +   F W   ++Y+  +P   + + K  T     +
Sbjct: 96  IREYLTEYQEKKKSSKVTIDNIRRILSSFFSWLEDEDYILKSPVRRIHKVKTGTNIKETY 155

Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234
           + E ++  +   +E  +     + L  +G+R  +        +  N         G+   
Sbjct: 156 SDEALELMRDNCTE-LRDLAIIDMLASTGMRVGEMVLLNRNDIDFNERECIVFGKGSKER 214

Query: 235 VELPDG-----FMKLLAMTPIGKETFFIN--NDKQKMNATQFSIWFKAKATKAGVNK-SA 286
           V   D          L          F++  +  +++      +  +    K G+ K   
Sbjct: 215 VVYFDARTKIHLQNYLKSRTDDNPALFVSLKSPHERLKIGGVEVRLREYGKKLGLQKVHP 274

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           H  R+  AT++ D G    +L    G + +D    Y 
Sbjct: 275 HKFRRTLATMAIDKGMPIEQLQQLLGHRKIDTTLQYA 311


>gi|260891942|ref|YP_003238039.1| integrase family protein [Ammonifex degensii KC4]
 gi|260864083|gb|ACX51189.1| integrase family protein [Ammonifex degensii KC4]
          Length = 383

 Score =  102 bits (254), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 44/302 (14%), Positives = 101/302 (33%), Gaps = 45/302 (14%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVE 124
            +  TL   + E+   A    L++ +   +    +  +I   G    RK++  H+   + 
Sbjct: 64  PEKVTLAEYLKEWHA-ARKHKLSLRTWERYGQLIEHWLIPHLGGIPLRKLSPVHLEKFIS 122

Query: 125 SR----------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
           +           K +P++       +    + AV++  +  NP  +V++P++  +     
Sbjct: 123 AMLEADRLDGKGKISPTTVRHAALVLNKALRDAVKKRLIPYNPMEAVDKPRKARKEPPAL 182

Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---------------- 218
            + ++++  S  +EG+         +Y+G R  +      + +                 
Sbjct: 183 KEGELRRLMS-AAEGTYLYAPITLAVYTGARLGEILGLRWRDVDFEAGCIFILQALKRNL 241

Query: 219 NNIFSIKTQKTG-TIITVELPDGFMKLLAMTPI--------------GKETFFINNDKQK 263
                    KT  +   +E+    +  L                            D   
Sbjct: 242 KGELYFDEPKTPRSRRRIEIGPACLAALRKQKKLQAEWKLKAGSAWQETGLVCTREDGSP 301

Query: 264 MNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETY 322
           ++   FS  F+  A+K G++ + H +R   AT+   AG     +    G  +V    + Y
Sbjct: 302 IDPHAFSSAFRKLASKLGIDANFHALRHTHATMLLKAGVHLKIVSERLGHASVAITGDLY 361

Query: 323 TK 324
           + 
Sbjct: 362 SH 363


>gi|238923684|ref|YP_002937200.1| site-specific tyrosine recombinase [Eubacterium rectale ATCC 33656]
 gi|238875359|gb|ACR75066.1| site-specific tyrosine recombinase [Eubacterium rectale ATCC 33656]
          Length = 331

 Score =  102 bits (254), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 40/275 (14%), Positives = 97/275 (35%), Gaps = 16/275 (5%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQ 135
             Y  +     +++ S   +         K  + +  KI+T  IR  +   +   + +  
Sbjct: 57  ETYFVTRKIEGMSMKSLELYNLVLKDFFFKL-NKEICKISTNDIRVYLYKNQQERNLSNS 115

Query: 136 FLTS----MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
            L +    +   F+WA  + Y+  NPC +++  K +    +P T  ++++ ++      +
Sbjct: 116 TLDTKRTIIHAFFEWAANEGYIGSNPCRNIKPIKYERPKRKPLTGIELEKVRNACD-NLK 174

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL-----LA 246
            +   E    +G R ++  R  +  +      +     G    +   +   ++     L 
Sbjct: 175 DKALLELFYSTGCRVTEMERLDISDIDFQTKEVLLFGKGDKHRISYLNAKAEIAIRNYLD 234

Query: 247 MTPIGKETFFINNDK--QKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGA 302
                +E  F+++ K   ++         +    K+G+ +    H +R  +AT   D G 
Sbjct: 235 SRNDNEEALFVSDRKPYGRLKKPAIEKRIRVLGEKSGIGRRLYPHLIRHTTATDGLDRGM 294

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
              E+    G   +     Y     R  +   + +
Sbjct: 295 PVEEVQQILGHVNIATTMIYA-EVSRANVKNNHRK 328


>gi|260642793|ref|ZP_05417338.2| tyrosine type site-specific recombinase [Bacteroides finegoldii DSM
           17565]
 gi|260620552|gb|EEX43423.1| tyrosine type site-specific recombinase [Bacteroides finegoldii DSM
           17565]
          Length = 368

 Score =  102 bits (254), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 39/260 (15%), Positives = 83/260 (31%), Gaps = 13/260 (5%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAI 134
           Y +       ++++  +++ YF   +      D   +T + I S +      KH  ++  
Sbjct: 96  YLELLEQKRYSLSTIKAYKIYFSDFMEYHKGQDLDLLTVEDINSYMLHMVKEKHISATQQ 155

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
               +    +   VR+          + R K         ++E+M+   +  S     R 
Sbjct: 156 NMRINAIKFYYEKVRKGKRQY--YGGIARAKEYKALPEVLSREEMKSIFAQLSNRKH-RC 212

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-----ITVELPDGFMKLLAMTP 249
               +  +GLR S+      Q + +    I+    G       ++ +L +          
Sbjct: 213 MISLIYSAGLRRSELLNLTPQDIISERMLIRIAGKGKKCRYSLLSEKLLNELRDYYREYR 272

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHEL 307
             K  F      ++ + +      K  A KAG+      H +R   AT   + G     +
Sbjct: 273 PQKWLFEGEQAGEQYSPSALVKILKEAARKAGIKHRVHLHMLRHTFATHLLEQGTDLRTI 332

Query: 308 MATYGWKTVDQAETYTKGAD 327
               G   +     Y   ++
Sbjct: 333 QELMGHTDIKTTAIYLHVSN 352


>gi|146337735|ref|YP_001202783.1| site-specific tyrosine recombinase [Bradyrhizobium sp. ORS278]
 gi|146190541|emb|CAL74543.1| site-specific tyrosine recombinase [Bradyrhizobium sp. ORS278]
          Length = 308

 Score =  102 bits (254), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 85/278 (30%), Gaps = 38/278 (13%)

Query: 90  NSRISFESYFDQIIRKS-----GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLF 144
           N+  ++      +         G         +   + ++ R    SS  + L++MR LF
Sbjct: 17  NTLDAYRRDLIDLSEFLTRKGNGFAAADTQALRDYLANLDLRGFKSSSVARRLSAMRHLF 76

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE--------------GS 190
           ++ + +   + +P   +  PKR     +  +  D+ +  +   E                
Sbjct: 77  RFLLSERIRSDDPAAILSGPKRGRALPKVLSIGDVDRMLTKAKELSEVADASLSQRLRAL 136

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELP--------DGF 241
           +     E L  +GLR S+         +N+    +   K      V L         D  
Sbjct: 137 RLYCLLEVLYATGLRVSELVALPRTAARNDARMIVVRGKGNKERLVPLNQASRQAMADYL 196

Query: 242 MKLLAMTPIGKET-----FFINNDK--QKMNATQFSIWFKAKATKAGVNK---SAHGVRK 291
             L    P  K +     +   +      +    F+   K  A  +G+     S H +R 
Sbjct: 197 AMLDRQKPHAKASATFGKWLFPSFGESGHLTRQHFARDLKELAAASGLPARLVSPHVLRH 256

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             A+     GA    +    G   +   + YT   +  
Sbjct: 257 AFASHLLHNGADLRIVQTLLGHTDISTTQIYTHVVEER 294


>gi|221133407|ref|ZP_03559712.1| Tyrosine recombinase xerC [Glaciecola sp. HTCC2999]
          Length = 383

 Score =  102 bits (254), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 51/290 (17%), Positives = 87/290 (30%), Gaps = 19/290 (6%)

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSR--ISFESYFD-QIIRKSGDFDYRKI 114
              + +P     TL     +Y     W  +    R   + ES +  +I    G      I
Sbjct: 90  PPIVQTPPTCALTLNEFWEQYY----WPHIKTRLRTFRNIESMWRLRIKPIFGKQRLDDI 145

Query: 115 TTKHIRSGVESRKHTPSSAIQF---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
               +     S      S       +  +  +F  A++ E +  NPC  VE  K   +  
Sbjct: 146 KVLELERFQTSLIEKRLSGSHVTGHIKLISRMFTLAIQWELITKNPCDKVEYMKFDNQKE 205

Query: 172 RPWTKEDMQQFKSFWSEGSQ--PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT--- 226
           R  + E+ ++F        Q    L   FLL +G+R   +       +  +   I     
Sbjct: 206 RFLSTEEQKRFIEVLMLHPQRPVNLLMIFLLVTGVRSGVAKALKWSWINMDKQIITVPPS 265

Query: 227 -QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS 285
             K     T+ L    M +L        T+   N    +    F   FK     A ++ S
Sbjct: 266 IAKNKKQNTIFLNTTAMDILKRLAGTDPTYVFINPMTHLPYNDFKKSFKTALKAAQISDS 325

Query: 286 --AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLG 332
              H +R    +    +  +   +              Y K   D +R  
Sbjct: 326 VRIHDLRHTFCSNLVSSNVSLASVQQLANHACYSTTLRYAKVSQDTLRQA 375


>gi|24373721|ref|NP_717764.1| phage integrase family site specific recombinase [Shewanella
           oneidensis MR-1]
 gi|24373766|ref|NP_717809.1| phage integrase family site specific recombinase [Shewanella
           oneidensis MR-1]
 gi|24348094|gb|AAN55208.1|AE015659_2 site-specific recombinase, phage integrase family [Shewanella
           oneidensis MR-1]
 gi|24348149|gb|AAN55253.1|AE015663_3 site-specific recombinase, phage integrase family [Shewanella
           oneidensis MR-1]
          Length = 287

 Score =  102 bits (254), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 42/269 (15%), Positives = 90/269 (33%), Gaps = 25/269 (9%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----SRK 127
             L+ ++         +  +R ++     Q+ +   +     IT + + +          
Sbjct: 2   SSLLQQFHDEISLRGYSARTRNAYLYAITQL-QHYANQPLDNITDEQLTAYFRYLNLEWH 60

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           H+ ++    L  +   ++  +++++      + +  PKR  +  +  + +D+     +  
Sbjct: 61  HSRATLKLQLNGIHFFYEHVLKRDF-----TIQLSLPKRPHKLPQLLSCQDIAALL-YHC 114

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLL 245
           +  + R         GLR S+     V  +      +K    K      V L    + LL
Sbjct: 115 QNLKQRAMLALCYGCGLRVSELTHIKVADIDGQRQLLKVCQGKGACDRWVILSPTLLILL 174

Query: 246 AMT-----PIGKETFFINNDK---QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSAT 295
                   P+  E  F +        ++ + F       A  A +    S H +R   AT
Sbjct: 175 RQYWQAYHPV--EWLFASTYHDVVYPLHESTFRKALAKAARLASITKPCSPHSLRHAYAT 232

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTK 324
               AG   H+L A  G  ++   E Y  
Sbjct: 233 HQLQAGMPLHQLQAQLGHHSIKSTERYLH 261


>gi|295696281|ref|YP_003589519.1| integrase family protein [Bacillus tusciae DSM 2912]
 gi|295696714|ref|YP_003589952.1| integrase family protein [Bacillus tusciae DSM 2912]
 gi|295411883|gb|ADG06375.1| integrase family protein [Bacillus tusciae DSM 2912]
 gi|295412316|gb|ADG06808.1| integrase family protein [Bacillus tusciae DSM 2912]
          Length = 293

 Score =  102 bits (254), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 39/274 (14%), Positives = 91/274 (33%), Gaps = 21/274 (7%)

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE---- 124
              + ++ +  +      L+ N+   +     +I  +       ++  +  R  +     
Sbjct: 2   GAHQHVLQQMTEDLRLRGLSPNTVDVYTRAA-RIFLEFCKRPVDQLDVQDARRFLLFLIC 60

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
            +K + ++   +  ++R LF   + +     NP L + R K      +  ++ ++     
Sbjct: 61  EKKRSAATVNVYNAAVRFLFAVTLNR---TFNP-LQIPRQKMPKTLPQVLSRPEIASILE 116

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTI--------ITV 235
                 + +  F  +  SGLR S++     QH+ +           G            +
Sbjct: 117 HC-HNLKHKALFALIYGSGLRVSEAAAIKTQHIDSRTMRVFVQGGKGAKDRYTVLSHTAL 175

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFS 293
           +L   + K    T      F        + +   S  F     +A ++K  S H +R   
Sbjct: 176 QLLREYWKAYRPTHPEGWLFLGTYSLAHITSAAISRAFGDALKRAQISKEVSIHSLRHSF 235

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           AT   + G +  ++    G  ++     Y   A+
Sbjct: 236 ATHLLEDGVSLLQIKELLGHASIRSTTVYLHLAN 269


>gi|228963415|ref|ZP_04124576.1| Prophage LambdaBa04, site-specific recombinase, phage integrase
           [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228796309|gb|EEM43756.1| Prophage LambdaBa04, site-specific recombinase, phage integrase
           [Bacillus thuringiensis serovar sotto str. T04001]
          Length = 375

 Score =  102 bits (254), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 46/292 (15%), Positives = 95/292 (32%), Gaps = 37/292 (12%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH 128
           TL   + E+ ++     +   + I++    + +II   G    + +   H +  V+S   
Sbjct: 65  TLSEYLQEWLENTAKQRVRDTTFINYRRAVNSRIIPVIGSHKLKDLKPLHGQRFVKSLID 124

Query: 129 ---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
              +P         ++   + AV+ E +  NP   VE P+ +      W+ E+ + F ++
Sbjct: 125 EELSPKYIEYIFIVLKGALEDAVKWELLYKNPFEHVEIPRPRKVVNNTWSIEETKTFLTY 184

Query: 186 WSEGSQPRLA-FEFLLYSGLRCSDSCRAGVQHL---------------QNNIFSIKTQKT 229
               +      F   L +G+R  +      +++                   F     KT
Sbjct: 185 AKFDNPIYYHLFLLALNTGMRRGELLGLKWKNVDLVEGKISVTETLIYDELGFRFTEPKT 244

Query: 230 -GTIITVELPDGFMKLLAMTPI--------------GKETFFINNDKQKMNATQFSIWFK 274
            G+   + +     K L                     +  F   D + +     +  F+
Sbjct: 245 AGSKRLISIDQSLCKELKSYKAKQNEFKLAIGKAYEDNDLVFSREDGRPIYPRTLTTVFE 304

Query: 275 AKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
                A V K   H +R   AT+    G     +    G  ++    +TY+ 
Sbjct: 305 RFIKTAQVPKIRFHDLRHTHATLLLKLGINPKIVSERLGHNSIKTTLDTYSH 356


>gi|187734784|ref|YP_001876896.1| tyrosine recombinase XerC [Akkermansia muciniphila ATCC BAA-835]
 gi|187424836|gb|ACD04115.1| tyrosine recombinase XerC [Akkermansia muciniphila ATCC BAA-835]
          Length = 300

 Score =  102 bits (254), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 44/283 (15%), Positives = 93/283 (32%), Gaps = 24/283 (8%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
           L++L  E + S H   +   +   F ++         +    ++     +   +      
Sbjct: 13  LQYLEVEKQASPHTVEVYARALRQFRAWAADSFPGWENCTPDQMRDWLFQELKDEAAT-- 70

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-----FKSF 185
           SS      ++R  +++ +R+  +  NP   V  P+RK       T   M +     +K+ 
Sbjct: 71  SSIRLRFAALRSFYRFMMRRHGLETNPMTGVSLPRRKKTLPVFLTLNQMLELLELPYKTA 130

Query: 186 WSEGS------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-EL- 237
               +      +     E     G+R S+     V  + +    +K    G    +  + 
Sbjct: 131 VPANAPAWLPYRDAAILELFYSCGMRLSELVGLDVGSVDHRFRGVKVMGKGRKERILPVG 190

Query: 238 PDGFMKL-----LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVR 290
                 L     +A  P      F++    +++A    +        + +    S H +R
Sbjct: 191 TPALAALETYVSMACLP-KNSPLFVSRIGTRLSARSVQMMLNKYVKLSSIPFTISPHKIR 249

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
              AT   +AGA    +    G  ++   + YT    R R+  
Sbjct: 250 HTFATHILEAGADLRSVQELLGHASLSTTQIYTH-VTRARMAE 291


>gi|85708192|ref|ZP_01039258.1| site-specific recombinase, phage integrase family protein
           [Erythrobacter sp. NAP1]
 gi|85689726|gb|EAQ29729.1| site-specific recombinase, phage integrase family protein
           [Erythrobacter sp. NAP1]
          Length = 366

 Score =  102 bits (254), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 64/338 (18%), Positives = 115/338 (34%), Gaps = 21/338 (6%)

Query: 24  YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW---LISEYRK 80
           + ++G  RR+ L    ++T   A   A              RK   +      L+ EY  
Sbjct: 28  FRQRGKQRRVSLGTTRQNTATEARRIAREKLAEVALDGLPSRKTTKSRAKEAPLMREY-A 86

Query: 81  SAHWGSLA----VNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQ 135
              W   A     ++R    +  D+ I+   GD    +IT   I    +       +  +
Sbjct: 87  ERFWADYAHHWKPSTRQRNRTGIDRDILPTFGDRRVDEITKADISFWRDGFAERTGAFNR 146

Query: 136 FLTSMRVLFKWAVRQEYVAI--NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EG 189
            +  + V+  +A +  Y +   NPC    R KRK    R  +  +  Q  +       E 
Sbjct: 147 TIPILSVMMGYAEQIGYRSRGSNPCRGTPRYKRK-RMERFLSAREYGQLATALDYFEAEH 205

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP 249
           S    A   L+Y+G RC +      + +Q     +   KTG  I V L     +++   P
Sbjct: 206 SAVVAAIRLLIYTGARCGEIENLSWEWVQEPRIMLPDSKTGAKI-VYLNRQAAEVITSIP 264

Query: 250 IGKET--FFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHEL 307
             K T   F +    +        W + +   A  +   H +R   A+ +     +   +
Sbjct: 265 DRKPTGLVFPSVRDPERPMKLGMHWPEIRNRAALPDVRLHDLRHSFASTAIRDNISLMVI 324

Query: 308 MATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345
               G    +    Y   +D   +    + R+S  + S
Sbjct: 325 GKLLGHALAETTSRYAHLSD--EVIADAAERVSGSIAS 360


>gi|307721281|ref|YP_003892421.1| tyrosine recombinase XerD subunit [Sulfurimonas autotrophica DSM
           16294]
 gi|306979374|gb|ADN09409.1| tyrosine recombinase XerD subunit [Sulfurimonas autotrophica DSM
           16294]
          Length = 275

 Score =  102 bits (254), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 42/252 (16%), Positives = 87/252 (34%), Gaps = 17/252 (6%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLF 144
            +L+  S  +++S    I +K        + T+ + S + S K+   +  + L+S+   F
Sbjct: 16  RALSKKSVEAYKSDLCAIEKKL-SKPLICLDTQKLMSVLFSYKNK-RTLNRKLSSVNAFF 73

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKSFWSEGSQPRLAFEFLL 200
           ++  +Q + +      ++  K      +  + ED+             G +      FL 
Sbjct: 74  EFCYKQHFSSQ--KTKLKFAKIPKLLPKFLSYEDILSGLDLIDRTNWIGKRDYALILFLY 131

Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA----MTPIGKETFF 256
            SG R S+     +  ++     ++  K      V L     K +      + I KE  +
Sbjct: 132 ASGTRISECLELMLGDIEEGWLHVRHAKGEKERIVPLAKVAKKAVDEYMFASAINKEYVW 191

Query: 257 INNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTV 316
            N    K++        +       +  S H +R   AT     GA    +    G  ++
Sbjct: 192 CNYQGGKLSRISAYKITQKY-----LGVSPHVLRHSYATSLIRGGADLRVVQELLGHASL 246

Query: 317 DQAETYTKGADR 328
              + YT    +
Sbjct: 247 LTTQIYTHIQKQ 258


>gi|325679180|ref|ZP_08158771.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
 gi|324109109|gb|EGC03334.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
          Length = 361

 Score =  102 bits (254), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 49/285 (17%), Positives = 103/285 (36%), Gaps = 32/285 (11%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH 128
           T+K L  E+  S     +  ++  ++    +  II   G  +   I  K +   +E + H
Sbjct: 62  TVKELALEWF-SVSKNRIKESTAANYRMKIEKHIIPPFGGMNAALIKAKAVYEFMEKKLH 120

Query: 129 TPSSAIQF---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
              SA      +  ++ +F++A  +EY   N    +  PK+    I   +K++ ++  ++
Sbjct: 121 DGLSARYISDIMVVLKSIFRYAA-REYRINNVIDGIIMPKKAKPEITIMSKDEQKRLVTY 179

Query: 186 WSEG-SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-------------KTG- 230
            ++  S   L     LY+G+R  + C    +++      +  +             KT  
Sbjct: 180 INDNRSTSTLGVALSLYTGMRIGEVCALRWENIDTEKRVLTVRHTIQRIQCFEGDNKTKV 239

Query: 231 ---------TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281
                    +   + +PD  + +L         F +   ++ +        FK     AG
Sbjct: 240 IIAEPKSQSSRREIPIPDCLIPMLKELKGKNSAFILTGTEKPIEPRTMQYRFKRILENAG 299

Query: 282 V-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
           V   + H +R   A+ + + G     L    G  +V    + Y  
Sbjct: 300 VREYNYHVLRHCFASGAIELGFDVKTLSEILGHSSVQITLDRYIH 344


>gi|83950126|ref|ZP_00958859.1| tyrosine recombinase [Roseovarius nubinhibens ISM]
 gi|83838025|gb|EAP77321.1| tyrosine recombinase [Roseovarius nubinhibens ISM]
          Length = 305

 Score =  102 bits (254), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 50/280 (17%), Positives = 91/280 (32%), Gaps = 31/280 (11%)

Query: 81  SAHWGSLAVNSRISFESYFDQIIR--------KSGDFDYRKITTKHIRSGVESRKHT--- 129
           S      + N+  ++     + +         ++G     +I+   +RS +   +     
Sbjct: 17  SRALKGQSDNTIEAYGRDVAEFLTFMSLHLGGEAGIAALGRISVTDMRSWMAQMRSGGEV 76

Query: 130 -PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM--------Q 180
            P S  + L++++   +W   +E       LS+  PK   +  RP + E          Q
Sbjct: 77  GPRSLARKLSAVKSFIRWLAEREGFDPTAVLSMRSPKFTRKLPRPLSAEHARDVIETAGQ 136

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL--- 237
           Q  + W  GS+       L   GLR S++     + L          K G    V +   
Sbjct: 137 QSSAPW-IGSRDMAVITLLYGCGLRISEALSLTGESLPLGEMLRIRGKGGKERLVPVIGA 195

Query: 238 ---PDGFMKLLAMTPIG-KETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRK 291
                     L   P+      F       ++        +    + G+  SA  H +R 
Sbjct: 196 ARAAVAEYAKLCPYPLDEGAPLFRGARGGPLSPRIVQKVVQQVRMQLGLPASATPHAMRH 255

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
             AT   +AG     +    G  ++   + YT   D  RL
Sbjct: 256 SFATHLLNAGGDLRTIQELLGHASLSTTQAYT-AVDTARL 294


>gi|224024153|ref|ZP_03642519.1| hypothetical protein BACCOPRO_00876 [Bacteroides coprophilus DSM
           18228]
 gi|224017375|gb|EEF75387.1| hypothetical protein BACCOPRO_00876 [Bacteroides coprophilus DSM
           18228]
          Length = 418

 Score =  102 bits (254), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 57/303 (18%), Positives = 100/303 (33%), Gaps = 44/303 (14%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISF---ESYFDQ---IIRKSGDFDYRKITT------- 116
           T+  L   +  +     L  ++  S+     +      +     DFD   I         
Sbjct: 110 TIDKLFDYFLATGG-NKLRPSTLKSYTATRRHLAAFVMLRYHISDFDITAIDRNFVNEFY 168

Query: 117 ---KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE-GIR 172
              +        R+ T + A++ +   R L   A   E++A NP   +   KRKTE G  
Sbjct: 169 AYLQGYLRQDNKRQCTENGALKHMQRFRKLLDMACSNEWIARNPADGMHWEKRKTERGF- 227

Query: 173 PWTKEDMQQFKS--FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----IFSIK 225
             T+E++++          S  R  F F +Y+G    D       ++          +  
Sbjct: 228 -LTEEELKRIADAQLTPALSVLRDIFLFSVYTGTSFVDMTMLTDNNIVVGIDHSLWLNFN 286

Query: 226 TQKTGTIITVELPDGFMKLL------AMTPIGKETFFINNDKQKMNATQFSIW-FKAKAT 278
             KTG   ++ L +  +++L               F        +   Q +    K  A 
Sbjct: 287 RTKTGQRCSIPLLEPALRILDRYENYRRASPQARLF-------PVPTNQVTNRDLKIIAR 339

Query: 279 KAGVNK--SAHGVRKFSAT-ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335
            A V+K  + H  R   AT I+   G     +    G  ++   + Y K  D+  L    
Sbjct: 340 AAHVDKNITFHVARHTFATTITLSNGIPLETVSRMLGHASIATTQIYAKIVDKKVLDDMA 399

Query: 336 SRR 338
             R
Sbjct: 400 QLR 402


>gi|222087447|ref|YP_002545984.1| tyrosine recombinase XerC [Agrobacterium radiobacter K84]
 gi|221724895|gb|ACM28051.1| tyrosine recombinase XerC [Agrobacterium radiobacter K84]
          Length = 311

 Score =  102 bits (254), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 42/276 (15%), Positives = 89/276 (32%), Gaps = 31/276 (11%)

Query: 85  GSLAVNSRISFESYFDQIIRKS-GDF-------DYRKITTKHIRSGVESRKHTPSSAIQF 136
             L+ ++  ++E    Q +    G         D + +     R  + +R+   + A   
Sbjct: 27  RRLSAHTLDAYERDTRQFLTFLTGHLGGPASINDIQALRPADFRGFLAARRKDGAGARSL 86

Query: 137 ---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK--------EDMQQFKSF 185
              L  +R L ++  ++  V      +V  PK+     +P +         ++ Q  +  
Sbjct: 87  GRNLAGLRSLLRYLEKKGLVNAAGAGAVRSPKQPKSLPKPLSDTQAITVVSDEAQLHEEP 146

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKL 244
           W   ++       L   GLR S++       ++    +++ T K      V L     + 
Sbjct: 147 W-IAARDAAVLTLLYGCGLRISEALDLTPDDIRPGATALRITGKGNKTRLVPLLPVVAEA 205

Query: 245 LAMTPI-------GKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSAT 295
           +                 F      K++        +   +  G+    + H +R   AT
Sbjct: 206 VERYRAICPYHLDAGSPLFRGARGGKLHPGIIQRGMQKLRSAFGLPDTATPHALRHSFAT 265

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
                G     +    G  ++   + YT G D+ RL
Sbjct: 266 HLLAGGGDLRTIQELLGHASLSTTQVYT-GVDQSRL 300


>gi|86605557|ref|YP_474320.1| phage integrase family site specific recombinase [Synechococcus sp.
           JA-3-3Ab]
 gi|86554099|gb|ABC99057.1| site-specific recombinase, phage integrase family [Synechococcus
           sp. JA-3-3Ab]
          Length = 309

 Score =  102 bits (254), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 50/304 (16%), Positives = 101/304 (33%), Gaps = 37/304 (12%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK-- 127
           +L  L+ ++ +      LA  SR ++    +Q  +        ++   H++S + S K  
Sbjct: 3   SLSQLVGQFLQERQ-RDLAPASRRTYRIALEQFAKTCP-VPLPQVQPSHVQSFLNSLKGR 60

Query: 128 -------------HTPSSAIQFLTSMRVLFKWAVRQEYVAIN-PCLSVERPKRKTEGIRP 173
                         +P++      +++  F+WA ++ Y     P  ++   +      R 
Sbjct: 61  PFRNRSGQWVHPPASPATYNLKRLALQQFFEWASQRGYFPDPLPTQAIRPARLPARLPRD 120

Query: 174 WTKEDMQQFKSFWSEGSQPRLAFE-FLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQK 228
             +  +Q+        S    A    LL  GLR  +     VQ      + ++  ++  K
Sbjct: 121 LDRLLLQRVLQRAQSHSLRYAALIRLLLECGLRAQELLDLTVQDFQISPEGSLLEVRCGK 180

Query: 229 TGTIITVELPDGFMKLL-------AMTPIGKETFFINN------DKQKMNATQFSIWFKA 275
                 V + D   +LL              +  F++         + +           
Sbjct: 181 GSKPRAVAVGDPLSELLQQYLSRERGPCAPTDPLFVSQSRCPAYRGRPLTYDGLRHIVLK 240

Query: 276 KATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335
                  +++ H  R   AT+  D G     +    G  T      YT+ A+ +R  I +
Sbjct: 241 LTEPEPGHQTPHQFRHSFATLLLDRGVAPEHIQHLLGHTTAAMTMRYTQRAN-LRAAIAH 299

Query: 336 SRRI 339
           SR I
Sbjct: 300 SRAI 303


>gi|282917374|ref|ZP_06325128.1| hypothetical protein SATG_02589 [Staphylococcus aureus subsp.
           aureus D139]
 gi|282318726|gb|EFB49082.1| hypothetical protein SATG_02589 [Staphylococcus aureus subsp.
           aureus D139]
          Length = 390

 Score =  102 bits (254), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 63/385 (16%), Positives = 128/385 (33%), Gaps = 62/385 (16%)

Query: 17  RHGKIIYYFRK---GHGRRIRLPYPHESTF----IPAYMSALTGSTPKREYINSPRKKPT 69
           + G   + +R          +  Y   S F       + + +     +     +P    +
Sbjct: 6   KRGNT-WRYRISLGKDAETGKYKYISNSGFKRKSDAKHHAEMVERQLRNGEYIAP--STS 62

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           T K +  ++  S +   + V+S  + E      I +  +   + I     +  V      
Sbjct: 63  TFKQVADDWI-SQYANDVKVSSVRAREKAIHHAIERFNNKPIQTIKKHDYQRFVNDISIQ 121

Query: 130 PSSA--IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK--------TEGIRP-WTKED 178
            S       +TS  ++FK+A   + + I P   ++RPK+K        TE  +    K++
Sbjct: 122 YSKNYVDSIVTSTNMIFKYAYDMKLIRIMPSEGIKRPKKKVSVEELEDTEIHKKFLEKDE 181

Query: 179 MQQFKSFWSEGSQPRLAFEF---LLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ------ 227
           + QF         P+ +FE    L Y+G+R  +        +   NN  +I         
Sbjct: 182 LFQFLEIAKNHHSPQNSFEVFCTLAYTGMRAGELLALKWSDIDFENNTINITKTYYNPNN 241

Query: 228 ----------KTGTII-TVELPDGFMKLLAMTPIG------------KETFFINNDKQKM 264
                     KT + I  + +    +KLL    +                 F + +   +
Sbjct: 242 NKKQYQILTPKTESSIGKIPVDPHVIKLLKNYKVDVQDTWKNELYVDNNFVFTDVNGYPL 301

Query: 265 NATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE- 320
              +  +W K    K  +     S H  R     +  +AG    E+      K ++    
Sbjct: 302 VIKKLQLWIKVILKKTDITNKQISTHSFRHTHCALLIEAGVHIKEIQERLRHKDINTTMN 361

Query: 321 TYTKGADRIRLGIKNSRRISSVVDS 345
            Y K  +  +     S++ S ++++
Sbjct: 362 IYAKITNSYKK--DASQKFSKLMEN 384


>gi|187939931|gb|ACD39068.1| phage integrase [Pseudomonas aeruginosa]
          Length = 400

 Score =  102 bits (254), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 50/305 (16%), Positives = 95/305 (31%), Gaps = 27/305 (8%)

Query: 44  IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-I 102
           +     A            +  ++  T++ L   + +         ++R+ ++   D+ I
Sbjct: 73  LAQEWLAQVRRGGDPAADKAEARQAPTVEELCKRFMEDYSKKRNKPSTRVGYQGVIDRCI 132

Query: 103 IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA--INPCLS 160
           I   G      +    +   +E   +  + A +  + +R +F  A    Y     NPC  
Sbjct: 133 IPLLGRKKVHDVKRPDVAGLMEKLSYKQTEANKAFSILRKMFNMAEVWGYRPDGTNPCRH 192

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWS-----------EGSQPRLAFEFLLYSGLRCSDS 209
           V       +     + +DM +                      RL FEF      R S+ 
Sbjct: 193 VPMFP-AGKSTHLISDDDMGKLFRQLDKIEVEGLENYVIPLAIRLQFEFA----ARRSEI 247

Query: 210 CRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG-KETFFINNDKQKM-- 264
                + +   N        KTG +    + +   +LL+  P      + + + +     
Sbjct: 248 VTLEWEWVDLENRRVVWPDSKTGGMSK-PMSEEAYRLLSTAPRQEGNPYVLPSPRHPAQH 306

Query: 265 --NATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
                 +  W +        +   HG+R  SAT  A++G      MA    KTV     Y
Sbjct: 307 LTTGEYYGGWCRVLKAAGATHVGTHGIRHRSATDIANSGIPVKVGMALTAHKTVVMFMRY 366

Query: 323 TKGAD 327
               D
Sbjct: 367 VHTED 371


>gi|520404|gb|AAA64588.1| site-specific recombinase [Bacillus thuringiensis serovar
           morrisoni]
          Length = 306

 Score =  102 bits (254), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 44/279 (15%), Positives = 100/279 (35%), Gaps = 28/279 (10%)

Query: 74  LISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGD----------FDYRKITTKHIRSG 122
           LIS++  S +  G L   +   + S     +    +          F   ++T + I   
Sbjct: 14  LISDFISSLSQEGDLHTKTLKEYTSDLKDFVFWFENVWGKHAEDTLFHPIEVTARTIARY 73

Query: 123 VESRKHT----PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK-E 177
               + T    PS+  + + S++  F WA ++  V  N   S++    +    +  +  E
Sbjct: 74  RGHMQVTRLLKPSTINRRINSIKRYFDWAKQKGLVQTNYSKSIKFVPTEKTSPKRMSDKE 133

Query: 178 DMQQFKSFWSEGS-QPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTI 232
           +     +    G+ + R    F+L++GLR  + C   ++ +    +     +++ K    
Sbjct: 134 EAALMHAVEKYGTLRDRAMIIFMLHTGLRSMEVCDVQIEDVIMRKRGGYVVVRSGKRNKQ 193

Query: 233 ITVELPD----GFMKLLAMTPIGKETFFINND-KQKMNATQFSIWFKAKATKAGVNK-SA 286
             V L         + + ++ I +   F ++   +++         +     A +   SA
Sbjct: 194 REVPLNSTARCALEEHIRLSEISQSYLFPSSKTGKRLQERAIRHILQKYIRLAKLEGFSA 253

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           H +R     + A+     H L    G   ++    Y + 
Sbjct: 254 HDLRHRFGYVMAER-TPLHRLAQIMGHDNLNTTMIYVRA 291


>gi|310827610|ref|YP_003959967.1| hypothetical protein ELI_2021 [Eubacterium limosum KIST612]
 gi|308739344|gb|ADO37004.1| hypothetical protein ELI_2021 [Eubacterium limosum KIST612]
          Length = 338

 Score =  102 bits (254), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 49/299 (16%), Positives = 100/299 (33%), Gaps = 37/299 (12%)

Query: 66  KKPTTLKWLISEY-RKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITT---KHIR 120
           K+  TL+    E+ RK    G +  ++  +++   ++ ++ + GD     IT    +   
Sbjct: 18  KRSVTLEAFSREWIRKRGDEGKIKESTLTNYQRIIERYLLPELGDLRLDTITVEVVQDFV 77

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC-LSVERPKRKTEGIRPWTKEDM 179
             +E R    S+    +  +  + + AV    +  NPC   V + K +T   +  T ED 
Sbjct: 78  KTLERRALNTSTIRGIIGRLSSIMEKAVEAGLINKNPCGHIVIQKKWQTTTGKILTIEDQ 137

Query: 180 QQFKSFWSEGSQPR-LAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK----------- 225
           +    +         LA +  L++G+R S+      + +   N    ++           
Sbjct: 138 KALTHWLLAHEHNLSLAVQLGLFAGMRISEIAALQWKDIDLKNGFIQVRRNVQRVKNHDA 197

Query: 226 -TQKTGTII----------TVELPDGFMKLLAM----TPIGKETFFINNDKQKMNATQFS 270
             +KT   I          ++ +    MK L      T   +            +     
Sbjct: 198 GQRKTINQIGTPKSPKAFRSIPITSILMKSLKGYEKSTVKPEAFVIAKKGGSAYDVRTIQ 257

Query: 271 IWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGAD 327
            +FK   +   ++    H +R   AT + ++G     +    G          Y    D
Sbjct: 258 RYFKKIISVLKLDNYRFHDLRHTFATRAKESGMDIQIISEILGHSETAVTMNIYLHITD 316


>gi|300024727|ref|YP_003757338.1| integrase family protein [Hyphomicrobium denitrificans ATCC 51888]
 gi|299526548|gb|ADJ25017.1| integrase family protein [Hyphomicrobium denitrificans ATCC 51888]
          Length = 327

 Score =  102 bits (254), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 49/293 (16%), Positives = 101/293 (34%), Gaps = 32/293 (10%)

Query: 69  TTLKWLISEYRKSA-HWGSLAVNSRISFES----YFDQIIRKSGDFD----YRKITTKHI 119
             LK  + ++     +    +  +R ++      +   +    G         ++ TK  
Sbjct: 23  GDLKRAVEDWLAHLINERGQSAATREAYARDVTQFLAFLKTHLGRAPCLGDLSRVDTKVF 82

Query: 120 RSGVESRKHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
           R+ +  R+ +     S  + L+S+R  F+W  R+  +     L V  PK      +P T 
Sbjct: 83  RAFLAHRRKSDVVSRSLARSLSSLRTFFRWLEREGRLQNRAVLQVALPKIPHSVPKPLTV 142

Query: 177 EDMQQF-------KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL---QNNIFSIKT 226
           +   +        ++ W   ++       L  +GLR S++             ++  I  
Sbjct: 143 DGAAELVATKNDDRAEW-INARDTAVLLLLYGAGLRISEALSLTPNSAPLNGRDVMHITG 201

Query: 227 QKTGTIITVELP---DGFMKLLAMTP---IGKETFFINNDKQKMNATQFSIWFKAKATKA 280
           +     +   LP   +   K + + P    G    F+      ++     +       + 
Sbjct: 202 KGGKDRLVPALPIISEAIAKYMRLCPFPLSGDGPLFLGARGGPLSPRLIQLAMARMRREL 261

Query: 281 GVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           G+    + H +R   AT    AGA   ++    G  ++   + YT   DR RL
Sbjct: 262 GLPETATPHALRHSFATHLLSAGADLRQIQELLGHASLSTTQVYT-EVDRDRL 313


>gi|225018459|ref|ZP_03707651.1| hypothetical protein CLOSTMETH_02406 [Clostridium methylpentosum
           DSM 5476]
 gi|224948768|gb|EEG29977.1| hypothetical protein CLOSTMETH_02406 [Clostridium methylpentosum
           DSM 5476]
          Length = 329

 Score =  102 bits (254), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 44/267 (16%), Positives = 90/267 (33%), Gaps = 26/267 (9%)

Query: 100 DQIIRKSGDFDYRKITTKHIRSGVE----SRKHTPSSAIQFLTSMRVLFKWA-VRQEYVA 154
           + +I    D   R ++   +   +     SR +   +  + ++S+R  FK+  V  + + 
Sbjct: 58  EILINDIDDNFIRSVSLSDVYEFLNYTMRSRSNGAKTRARKVSSLRGFFKYLTVNTQLLT 117

Query: 155 INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS-----QPRLAFEFLLYSGLRCSDS 209
            NP  ++E P  K       + E   +        S     +        L  G+R S+ 
Sbjct: 118 DNPVKNLEIPAAKKSLPIHLSVEQSVKLLDEVGARSSGTQYRDYCILTLFLNCGMRLSEL 177

Query: 210 CRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLA----------MTPIGKETFFIN 258
               +     +  ++K   K      V L +     +            T + K+  F++
Sbjct: 178 VGINLSSFDRDSGALKLLGKGNKERLVYLNEACQDAIDNYLTKERGQLKTIVDKDALFLS 237

Query: 259 ND-KQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATISADAG-ATAHELMATYGW 313
               +++ A Q  +        AG++    S H +R  +AT+    G      L    G 
Sbjct: 238 CRSGKRLGARQVQLVVSGALKAAGLDHMGFSTHKLRHTAATLLYQEGNVDLLVLKEMLGH 297

Query: 314 KTVDQAETYTKGADRIRLGIKNSRRIS 340
             V   E YT  +++          ++
Sbjct: 298 ANVGTTEIYTHVSNKKVQEAAAKNPLA 324


>gi|215447156|ref|ZP_03433908.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis
           T85]
 gi|289759014|ref|ZP_06518392.1| tyrosine recombinase XerC [Mycobacterium tuberculosis T85]
 gi|289714578|gb|EFD78590.1| tyrosine recombinase XerC [Mycobacterium tuberculosis T85]
          Length = 299

 Score =  102 bits (254), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 40/268 (14%), Positives = 92/268 (34%), Gaps = 27/268 (10%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHTPSSA---IQFLTSM 140
             +V++R ++      +     D       +T   +RS + +     ++     +  +++
Sbjct: 17  GRSVHTRRAYLGDLRSLFAFLADRGSSLDALTLSVLRSWLAATAGAGAARTTLARRTSAV 76

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS--------QP 192
           +    WAVR+  +A +P   ++ PK +        ++   +  +    G+        + 
Sbjct: 77  KAFTAWAVRRGLLAGDPAARLQVPKARRTLPAVLRQDQALRAMAAAESGAEQGDPLALRD 136

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHL----------QNNIFSIKTQKTGTIITVELPDGFM 242
           RL  E L  +G+R S+ C   V  +          +       +  +G+   +    G +
Sbjct: 137 RLIVELLYATGIRVSELCGLDVDDIEHRPSVGSGARQGQQEAHSTCSGSQPPMRCTPGLV 196

Query: 243 KLLAM--TPIGKETFFINNDKQKMNATQFSIWFKA--KATKAGVNKSAHGVRKFSATISA 298
                  T        +    ++++  Q          A     +   HG+R  +AT   
Sbjct: 197 DGRRALVTAESGHALLLGARGRRLDVRQARTAVHQTVAAVDGAPDMGPHGLRHSAATHLL 256

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGA 326
           + GA    +    G  ++   + YT  A
Sbjct: 257 EGGADLRVVQELLGHSSLATTQLYTHVA 284


>gi|154150265|ref|YP_001403883.1| phage integrase family protein [Candidatus Methanoregula boonei
           6A8]
 gi|153998817|gb|ABS55240.1| phage integrase family protein [Methanoregula boonei 6A8]
          Length = 306

 Score =  102 bits (254), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 41/291 (14%), Positives = 94/291 (32%), Gaps = 33/291 (11%)

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ------IIRKSGDFDYRKITTKHIRSG 122
                 +  YR      + +  +  S+E           + R +              + 
Sbjct: 4   GYFSDWLKSYRNYLRMRNYSSRTLDSYEQVIRHFGYYVWLRRHTEVTKLVFFWKDLENAR 63

Query: 123 VES-------------------RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163
           +++                   R + P +  + ++++   +++   Q  V  NP   +ER
Sbjct: 64  LDTSVDVPPSMITDFLSFVSTMRTYKPKTFHRIISTLSSFYRFLSVQGAVVANPLAGIER 123

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223
           P+ K + ++      + +      +  + +L    +  +G+R S+ C   V+ +  +  +
Sbjct: 124 PRIKQQEVKYLKHNQVLRLIDSIEDP-RDKLIVRTIYSTGVRVSELCNMNVEDIDFDEHT 182

Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKE---TFFINNDKQKMNATQFSIWFKAKATKA 280
           I+ +  G  I +   D          +G       FI    + ++       FK  A  A
Sbjct: 183 IRIRGKGDKIRIVFVDDETLAGIQKFVGNRIAGPLFIGQQGKHISPRAIQHIFKHYAP-A 241

Query: 281 GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330
           G+  + H +R   A+           +    G  ++   E Y     D  R
Sbjct: 242 GI--TPHKIRHSYASELYRRSKNLRVVQENLGHTSIKTTEVYLHTDIDERR 290


>gi|91788824|ref|YP_549776.1| phage integrase [Polaromonas sp. JS666]
 gi|91698049|gb|ABE44878.1| phage integrase [Polaromonas sp. JS666]
          Length = 387

 Score =  102 bits (254), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 50/280 (17%), Positives = 103/280 (36%), Gaps = 16/280 (5%)

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFE-SYFDQIIRKSGDFDYRKITTKH 118
                ++  TT   L+++Y  +    ++   S  +++  Y   +    G      ++ + 
Sbjct: 92  ASARAKRGETTFAELLTDYLSN---TTMKPRSLEAYQWLYKKHVEADLGKRKLSDVSVER 148

Query: 119 IRSGVES-RKHTPSSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTK 176
           IR+  +   K TP++A + ++ ++  F WA+++  Y   NP   V++   +T   R    
Sbjct: 149 IRALHKKISKDTPTTANRCVSMVKAAFNWALKEGTYTGANPAGHVKK-NTETSRTRYLQP 207

Query: 177 EDMQQFKSFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQ--KTGT 231
            ++  F     E  +P +  F   L +G R ++        +  ++ I+ I     K G 
Sbjct: 208 AELAIFFQALEESEEPAKSFFMLCLLTGARRANVLAMRWADISLEDGIWRIPAGDAKAGE 267

Query: 232 IITVELPDGFMKLLAMTPIG----KETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAH 287
            + + L    + LL    I         F  + K          W   +      +   H
Sbjct: 268 EMNIPLVPEAVTLLTRLKIEVADTSPWVFPADSKTGHYQEPKRAWATLRRRSGLADLRIH 327

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
            +R+   +     GA         G K++  A  Y + AD
Sbjct: 328 DLRRTMGSWLVRTGANTAINAKALGHKSMQAAAVYQRIAD 367


>gi|297624037|ref|YP_003705471.1| integrase family protein [Truepera radiovictrix DSM 17093]
 gi|297165217|gb|ADI14928.1| integrase family protein [Truepera radiovictrix DSM 17093]
          Length = 292

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 35/251 (13%), Positives = 74/251 (29%), Gaps = 10/251 (3%)

Query: 80  KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
           +S  W   +     SF  + +     +    +     +     ++S   +  +    + S
Sbjct: 20  RSLEWHETS---LKSFTRWLEACSHSAEPETWNPTLIREYVVYLQSSGLSGWTVTNKVQS 76

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199
           +    +W   +E+   N    V +PK      +P+T  ++++         +       L
Sbjct: 77  LLAFTRWLHEEEFTEKNVAERVRKPKPPQTQRQPFTDAELRRLLKASQSSIRDAAIVALL 136

Query: 200 LYSGLRCSDSCRAGVQH-LQNNIFSIKTQKTGTIITVELPDGFMK-----LLAMTPIGKE 253
           L + +R S+ C   +   L +        K      V       K     LL        
Sbjct: 137 LDTAIRASELCTLKLSDCLLDQCLIKVMGKGNKERVVPHSPQTGKLVSKWLLKGRASEGP 196

Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYG 312
             F     ++          +    +A V +   H +R  +A      G     L    G
Sbjct: 197 YVFHTERSERFTPRSLHKLIERIGNRAAVDDCYPHRLRHSAAITMLRNGMDPLTLQRMLG 256

Query: 313 WKTVDQAETYT 323
             +++    Y 
Sbjct: 257 HTSLNMTMRYV 267


>gi|240851370|ref|YP_002972773.1| integrase /recombinase xerD [Bartonella grahamii as4aup]
 gi|240268493|gb|ACS52081.1| integrase /recombinase xerD [Bartonella grahamii as4aup]
          Length = 312

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 44/286 (15%), Positives = 103/286 (36%), Gaps = 33/286 (11%)

Query: 72  KWLISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVES 125
             +I  + +  +     + ++  +++        +         + +      + S + +
Sbjct: 4   GAVIDHFLEMMSAERGASPHTLAAYQHDLQWAQDELSSHSVSLFSAQKEDLIALLSLMHT 63

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE------DM 179
                SS  + L+++R  +++   +   A +P   ++ P++     +  +++      D+
Sbjct: 64  FGFAASSQARRLSTLRQFYQFLYAEGLRADDPSHDIDAPRQGRPLPKIMSEDAVIKLLDL 123

Query: 180 QQFK-SFWSEGSQPRLAF-------EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
            Q + +    GS+  L         E L  +GLR S+     VQ ++   +SI  +  G 
Sbjct: 124 AQLEVNQADYGSKDYLRALRLQLLSEMLYATGLRISELVSLPVQAVRGKAYSILVRGKGK 183

Query: 232 IITVELPDG-----FMKLLAMTPIGKET-----FFINNDKQKMNATQFSIWFKAKATKAG 281
              + L         ++ L +   GK+      F  N++   +     +   K  A +AG
Sbjct: 184 KERMVLLSKKAYQVLLQWLNLRDQGKDVASPYLFPANSETGYIARQVVARELKNLARRAG 243

Query: 282 VNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +     S H +R   A+     GA    +    G   +   + YT 
Sbjct: 244 IESDSFSPHVLRHAFASHLLQNGADLRAVQHLLGHSDIATTQIYTH 289


>gi|228937164|ref|ZP_04099861.1| Site-specific recombinase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228822497|gb|EEM68429.1| Site-specific recombinase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 293

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 44/279 (15%), Positives = 101/279 (36%), Gaps = 28/279 (10%)

Query: 74  LISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGD----------FDYRKITTKHIRSG 122
           +IS++  S +  G L   +   + S     +    +          F   ++T + I   
Sbjct: 1   MISDFISSLSQEGDLHTKTLKEYTSDLKDFVFWFENVWGKHAEDTLFHPIEVTARTIARY 60

Query: 123 VESRKHT----PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK-E 177
            E  + T    PS+  + + S++  F WA ++  V  N   S++    +    +  +  E
Sbjct: 61  REHMQVTRLLKPSTINRRINSIKRYFDWAKQKGLVQTNYSKSIKFVPTEKTSPKRMSDKE 120

Query: 178 DMQQFKSFWSEGS-QPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTI 232
           +     +    G+ + R    F+L++GLR  + C   ++ +    +     +++ K    
Sbjct: 121 EAALMYAVEKYGTLRDRAMIIFMLHTGLRSMEVCDVQIEDVIMRKRGGYVVVRSGKRNKQ 180

Query: 233 ITVELPD----GFMKLLAMTPIGKETFFINND-KQKMNATQFSIWFKAKATKAGVNK-SA 286
             V L         + + ++ I +   F ++   +++         +     A +   SA
Sbjct: 181 REVPLNSTARCALEEHIRLSEISQSYLFPSSKTGKRLQERAIRHILQKYIRLAKLEGFSA 240

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           H +R     + A+     H L    G   ++    Y + 
Sbjct: 241 HDLRHRFGYVMAER-TPLHRLAQIMGHDNLNTTMIYVRA 278


>gi|163782731|ref|ZP_02177727.1| phage integrase family protein [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881852|gb|EDP75360.1| phage integrase family protein [Hydrogenivirga sp. 128-5-R1-1]
          Length = 351

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 53/344 (15%), Positives = 110/344 (31%), Gaps = 15/344 (4%)

Query: 17  RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76
           + GK+ Y+     G+R        S  +   ++    S   R      +++ TT    + 
Sbjct: 10  KRGKVFYFEFMYKGQRYYEKIGVVSKTVAKEIANEIRSRIIRGEYIPQKERKTTFSDAVR 69

Query: 77  EYRKSAHWGSLA-VNSRISFESYFDQIIRKSGDFDYRKITT---KHIRSGVESRKHTPSS 132
            Y +     S A   S+        ++    G     +I+T   +  +         P +
Sbjct: 70  VYIEWYRKKSTAREKSKEENIRRARRLEEFFGSRKLSQISTFLVESYKKKRLEEGVKPQT 129

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
               L  +  + + A              +      E +R  ++ + Q+  S   E  +P
Sbjct: 130 INMELNILGSILRRAKEAGLFDGELPKIEKFRNADRERLRFLSEREAQRLISACPEWFKP 189

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKT--QKTGTIITVELPDGFMKLLAMT 248
            + F   L +GLR  +      + +     + +++    K+G +  + +     KLL   
Sbjct: 190 VVIF--ALNTGLRAGEIFSLRWEDVDFERGVITVREASSKSGKVRKLPMNATVKKLLQGL 247

Query: 249 PIG-KETFFINNDKQKMNA--TQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATA 304
                   F N            +   FK    KAG+ +   H +R   A+  A      
Sbjct: 248 ERKEHGYIFTNRFGLPYKYEDKTYRRVFKTACEKAGIKDFRFHDLRHTFASWVAMNSKDI 307

Query: 305 HELMATYGWKTVDQAETYTK-GADRIRLGIKNSRRISSVVDSDD 347
           + +    G  +    + Y     D +R  +++     S   S+ 
Sbjct: 308 YAVQNLLGHSSPSVTKRYAHLTDDYLRSVVESVPNFGSSSASEK 351


>gi|71903698|ref|YP_280501.1| DNA integration/recombination/invertion protein [Streptococcus
           phage 6180.1]
 gi|71802793|gb|AAX72146.1| DNA integration/recombination/invertion protein [Streptococcus
           phage 6180.1]
          Length = 374

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 48/302 (15%), Positives = 93/302 (30%), Gaps = 27/302 (8%)

Query: 48  MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG 107
            +A       +  ++ P+    T   L  ++               +  +    I+ K  
Sbjct: 52  QAARETLISLQAELDKPKSS-MTFGVLTKQWLNEYEKTVQGSTYLKTERNINKHILPKLD 110

Query: 108 DFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167
                 I    I+   E   +      + L  +R +   AVR  Y+  NP L +  PK K
Sbjct: 111 KVKIGDINPLLIQRLTEEWCNDLKYGGKILGLVRNILNLAVRYGYINNNPALPITPPKIK 170

Query: 168 TEG---IRPWTKEDMQQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222
            +       +T + ++QF     +         F  L ++G+R  +        L  N  
Sbjct: 171 RKRKMNNNFYTLDQLKQFLELVEKTDNIEKIALFRLLAFTGIRKGELLALTWDDLNGNTL 230

Query: 223 SIKTQKTGTIITVEL------------------PDGFMKLLAMTPIGKETFFINNDKQKM 264
           SI    T T + +E+                   +   +L    P     F  +     M
Sbjct: 231 SINKAVTRTQVGLEIDVTKTKSSDRLISLDDETLEILQELHETFPTSTLMF-QSESGGIM 289

Query: 265 NATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TY 322
             +    W         + + + HG R   A++  ++G +  ++    G   +      Y
Sbjct: 290 TPSLPRKWLLQIIKGTDLPQITIHGFRHTHASLLFESGLSLKQVQHRLGHGDLQTTMNVY 349

Query: 323 TK 324
           T 
Sbjct: 350 TH 351


>gi|307354005|ref|YP_003895056.1| integrase family protein [Methanoplanus petrolearius DSM 11571]
 gi|307157238|gb|ADN36618.1| integrase family protein [Methanoplanus petrolearius DSM 11571]
          Length = 302

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 42/289 (14%), Positives = 97/289 (33%), Gaps = 33/289 (11%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFES------YFDQIIRKSG----------------- 107
               +  +       + +  +  S+E       Y+  I R  G                 
Sbjct: 6   FSEWLKRFSHHLRMRNFSPRTIASYEGAVKKFGYYLWIRRNMGQEKLVIYWNDLANARLD 65

Query: 108 -DFDYRKITTKHIRSGVESRKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165
            + D   +      + + S +    ++  + ++S+   +++   Q  V  NP  +++RPK
Sbjct: 66  TEIDTTPMMINDFLAFLTSLRDYKATTLQRIISSLSSFYRYCYTQGVVDSNPLAAIDRPK 125

Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSI 224
            K + +R      +    +  +   + RL    +  +G+R S+ C   ++ +   +    
Sbjct: 126 IKEKELRYLKHNQVLSLFNSIN-NERDRLIIRTIYATGVRVSELCSINIEDIDFEDRIIR 184

Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGK--ETFFINNDKQKMNATQFSIWFKAKATKAGV 282
              K G I TV + +  ++ +     G+     F     + ++       F+  A   G+
Sbjct: 185 VKGKGGKIRTVFIDEDTLQDINHYTSGRISGPLFEGQQGKNISPRTVQHIFERYAPT-GI 243

Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330
             + H +R   A+           +    G  ++   E Y     D  R
Sbjct: 244 --TPHKIRHSYASELYRRSKNLRVVQENLGHSSIQTTEVYLHTDIDERR 290


>gi|58583617|ref|YP_202633.1| site-specific tyrosine recombinase XerC [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|58428211|gb|AAW77248.1| site-specific recombinase [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 347

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 39/267 (14%), Positives = 90/267 (33%), Gaps = 27/267 (10%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDF-------------DYRKITTKHIRSGV---ESRKH 128
             ++ ++  ++      ++  +G+              D  ++ + H+R  V     R  
Sbjct: 57  RQVSAHTLDAYRRDLAALVAWTGERNAEDGAQQTATPVDSAQLDSAHLRQFVAAEHRRGL 116

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF--- 185
           +P S  + L++ R  + W ++   +A +P  ++  PK + +  +    ++  +       
Sbjct: 117 SPKSLQRRLSACRSYYAWLLKHGRIAASPAAALRAPKAQRKLPQVLDADEAVRLVEVPTD 176

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKL 244
              G + R   E    SGLR S+ C    + L  ++   +   K      V +    +  
Sbjct: 177 APLGLRDRALLELFYSSGLRLSELCALRWRDLDLDSGLVMVLGKGSKQRLVPVGSHAIAA 236

Query: 245 LAM-----TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS 297
           L               F       ++     I  K  A + G+  +   H +R   A+  
Sbjct: 237 LRQWRRDSGASADAHVFPGRTGGAISQRAVQIRIKQLAVRQGMFKDVHPHMLRHSFASHI 296

Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324
            ++      +    G   +   + YT 
Sbjct: 297 LESSGDLRGVQELLGHSDIATTQIYTH 323


>gi|218290710|ref|ZP_03494792.1| integrase family protein [Alicyclobacillus acidocaldarius LAA1]
 gi|218239248|gb|EED06447.1| integrase family protein [Alicyclobacillus acidocaldarius LAA1]
          Length = 392

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 42/299 (14%), Positives = 89/299 (29%), Gaps = 40/299 (13%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVE 124
               T+   + E+        +   +  S+    +  II + G  +  K+   HI+    
Sbjct: 69  PSKKTVGAYLREWLDDKR-TKVRPGTLRSYVWLVEHHIIPRIGQLELAKLRPSHIQKLYT 127

Query: 125 SRK-----HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
             +      +  S +     +      AV+   +  N   +VE P+   + +R WT E +
Sbjct: 128 DLQTGDEHISKRSVLHAHRILHQALDRAVKWGLITRNVTDAVEPPRPARQEMRVWTDEQL 187

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT---------- 229
             F     + S+  +AF  L  +G+R  +      + +      ++  ++          
Sbjct: 188 DAFLQAARK-SRYYVAFVLLSSTGMRVGEVLALRWEDVDLQAGLVRVVRSYSYTGKGYRI 246

Query: 230 ------GTIITVELPDGFMKLLAMTPI--------------GKETFFINNDKQKMNATQF 269
                     ++ LP   + LL                     +        + +     
Sbjct: 247 EEPKTESGRRSIALPPAVVDLLRKHKTEQAARRLMVGSAWEDNDLVICTAFGKPILQHNL 306

Query: 270 SIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGA 326
              F     + G+ +   H +R   ATI    G     +    G   +     TY+   
Sbjct: 307 RTSFHRIIERTGLPRIRLHDLRHTHATILLQRGVHPKVVQERLGHSDITLTLNTYSHVV 365


>gi|149924555|ref|ZP_01912912.1| Phage integrase [Plesiocystis pacifica SIR-1]
 gi|149814565|gb|EDM74148.1| Phage integrase [Plesiocystis pacifica SIR-1]
          Length = 374

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 43/288 (14%), Positives = 86/288 (29%), Gaps = 20/288 (6%)

Query: 54  STPKREYINSPRKKPTTLKWLISEYRK-SAHWGSLAVNSRISFESYFD-QIIRKSGDFDY 111
                E    P+K+  T       Y +          +   S E +    I+   GD   
Sbjct: 59  RRASGEDTAQPKKEVPTFAEFAPRYVEGQVKGNGAKPSHVESIERHLRIHILPAFGDKRL 118

Query: 112 RKITTKHIRSGVESRKHTPSS--AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
            ++  + +         T  +       T++  L K AV  + +   P   ++R +   +
Sbjct: 119 DELEQEDLERFKAKLGETRKNKTINNIQTTLSTLLKAAVAWKVIEEVPVE-IKRLRVVRK 177

Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG---LRCSDSCRAGVQHLQNNI----- 221
            +  +  ++  + + F ++          +L  G   LR  +        L         
Sbjct: 178 KMDFFDFDEFARLREFAAKAPSDATDLAIVLLGGDAGLRAGEIRGLHWNSLDFQRNRLTV 237

Query: 222 ------FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKA 275
                   I T K   I  + +     K L   P  ++          +     S   + 
Sbjct: 238 EWAEWRGQITTPKHDKIRVLPMTQRLQKALRQLPRDRKLVLAQPSGDPLTVGLLSKRLRR 297

Query: 276 KATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
              +AG+ +K  H +R    +  A  G  A  +    G  ++   E Y
Sbjct: 298 VEKRAGLRDKGPHTLRHTFCSHLAMRGIPARVIQQLAGHSSLVTTERY 345


>gi|149200277|ref|ZP_01877298.1| integrase/recombinase [Lentisphaera araneosa HTCC2155]
 gi|149136641|gb|EDM25073.1| integrase/recombinase [Lentisphaera araneosa HTCC2155]
          Length = 318

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 50/300 (16%), Positives = 107/300 (35%), Gaps = 42/300 (14%)

Query: 77  EYRKSAHWGSLAVNSRISFE-SYFDQIIRKSGD-------FDYRKITTKHIRSGVESRKH 128
           +Y K+    + +++++ ++     + I +  GD         +++I     +  + S + 
Sbjct: 15  KYLKTE--KNFSLHTQKAYFFDIVEFITQTWGDEAIEAQSLAWKQIDKNAAKGYIFSLQE 72

Query: 129 TPSSAIQFL---TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS- 184
           +  S    L   +S+R L+ +  R+E  + NP   ++  K+        ++ED+    S 
Sbjct: 73  SKISKNTLLRKCSSLRSLYNFFQREELQSTNPFQDIKAAKKDKSLPLILSREDISTLLSS 132

Query: 185 ---FWSE---------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGT 231
              +W++          S+     E +   GLR  ++       +     ++K   K   
Sbjct: 133 PAPYWAQKKGKNNDFMASRDAAILEIIYSGGLRIQEALDINFDQINLEESTLKIFGKGKK 192

Query: 232 IITVELPDGFMKLLAM------------TPIGKETFFINNDKQKMNATQFSIWFKAKATK 279
             T  L +   + L              T      F    D ++++A       KA    
Sbjct: 193 QRTAYLGNPAKQALEQYFACRKNAELNWTSANDPVFINLKDLKRLSARSIQRNLKAYLQS 252

Query: 280 AGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNS 336
             +  + + H +R   AT   DAGA    +    G + +   + YT    DR+      +
Sbjct: 253 CQLPPDITPHKLRHSFATHLLDAGADLRSVQELLGHENLSTTQIYTHISTDRLLQAYDQA 312


>gi|291551222|emb|CBL27484.1| Site-specific recombinase XerD [Ruminococcus torques L2-14]
          Length = 327

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 39/277 (14%), Positives = 91/277 (32%), Gaps = 14/277 (5%)

Query: 59  EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH 118
           E     + +  + + L+  +  +      +  +   + +    ++   G    + I T  
Sbjct: 37  EVTKIKKDEELSEQNLVESFLSAKRIEGCSEKTLKYYNATIQSMLDGIG-KSIKYIVTDD 95

Query: 119 IR----SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
           IR         +K +  +       +   F W   ++Y+  +P   + + K  T     +
Sbjct: 96  IRCYLTEYQAKKKSSKVTIDNIRRILSSFFSWLEDEDYILKSPVRRIHKVKTGTNIKETY 155

Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234
           + E ++  +   +E  +     + L  +G+R  +      + +  N         G    
Sbjct: 156 SDEALELMRDNCTE-LRDLAMIDMLASTGMRVGEMVLLNREDIDFNERECVVFGKGDKER 214

Query: 235 VELPDG-----FMKLLAMTPIGKETFFIN--NDKQKMNATQFSIWFKAKATKAGVNK-SA 286
           +   D          L          F++  +   +MN     +  +    + G+NK   
Sbjct: 215 IVYFDARTKIHLQNYLNSRKDDNPALFVSLQSPHNRMNIGGIEVRLRQLGKRLGLNKVHP 274

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           H  R+  AT++ D G    +L    G + +D    Y 
Sbjct: 275 HKFRRTLATMAIDKGMPIEQLQQLLGHRRIDTTLQYA 311


>gi|163795288|ref|ZP_02189255.1| putative integrase/recombinase protein [alpha proteobacterium
           BAL199]
 gi|163795386|ref|ZP_02189353.1| putative integrase/recombinase protein [alpha proteobacterium
           BAL199]
 gi|163796178|ref|ZP_02190140.1| putative integrase/recombinase protein [alpha proteobacterium
           BAL199]
 gi|159178637|gb|EDP63177.1| putative integrase/recombinase protein [alpha proteobacterium
           BAL199]
 gi|159179274|gb|EDP63805.1| putative integrase/recombinase protein [alpha proteobacterium
           BAL199]
 gi|159179372|gb|EDP63903.1| putative integrase/recombinase protein [alpha proteobacterium
           BAL199]
          Length = 276

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 40/272 (14%), Positives = 96/272 (35%), Gaps = 26/272 (9%)

Query: 85  GSLAVNSRISF-------ESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFL 137
            +L+  ++ S+         YFD+   + G  D R      + +G+     + ++  Q +
Sbjct: 8   RNLSPATQRSYVLAVSKFSRYFDRSPDRLGLEDVRAFQVHLVSTGI-----SWAALNQTV 62

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE 197
            ++R  +   +    +       +   +         + +++ +F    +   + R A  
Sbjct: 63  CALRFFYGVTLGHGEIP----ERIPYAREPRNLPVVLSADEVVRFLEAVAS-LKSRAALT 117

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ--KTGTIITVELPDGFMKLLA---MTPIGK 252
               +GLR S+     V  + +    I+ +  K G    V L    + +L         +
Sbjct: 118 TAYAAGLRVSEVVALRVGDVDSGRMVIRVEHGKGGKDRYVMLSAQLLGILRTYWRLARPE 177

Query: 253 ETFFINND-KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMA 309
              F   +  + ++        ++    AG++K  + H +R   AT   ++G     +  
Sbjct: 178 HWLFPGREASKPIDVQVLHAACRSARAAAGLDKRVTVHTLRHSFATHLLESGTDIRIIQV 237

Query: 310 TYGWKTVDQAETYTKGAD-RIRLGIKNSRRIS 340
             G   +     YT+ ++  IR       R++
Sbjct: 238 LLGHANLSTTARYTQVSNGLIRRTESPLDRLA 269


>gi|309789403|ref|ZP_07683993.1| phage integrase family protein [Shigella dysenteriae 1617]
 gi|308922797|gb|EFP68314.1| phage integrase family protein [Shigella dysenteriae 1617]
          Length = 241

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 78/224 (34%), Gaps = 17/224 (7%)

Query: 112 RKITTKHIRSGVESRKHT-PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170
             I   H+R  ++ R     + A     SM  +F+W   + YV  NPC  V +   K   
Sbjct: 4   DNIKPAHVRLYMDKRGLKSKTQANHEKASMSRVFRWGYERGYVKGNPCQGVSKFSLKPRD 63

Query: 171 IRPWTKEDMQQFKSFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229
              +T E+   + + + E S   + A E       R  D  +     + +    I+  KT
Sbjct: 64  YY-FTDEE---YIAIYQEASPVLQCAMETAYLCATRIGDIRKLTWDQVMSKGLFIQQGKT 119

Query: 230 GTIITVELPDGFM-KLLAMTPIGKETF-FINNDKQKMNATQFSIWFKAKATKAG------ 281
           G     +  +     L     +G + F   N    + + T F+  ++     A       
Sbjct: 120 GKKQLKQYSERLTFALEQAKSLGGQHFVVCNKYGGQYSYTGFNDIWRKARAAASEKLGYP 179

Query: 282 VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           +  + H + K       D   ++ E     G KT  Q  TY + 
Sbjct: 180 ITGTFHDL-KAKGISDYD--GSSKEKQLFSGHKTEAQVLTYDRK 220


>gi|86139826|ref|ZP_01058392.1| Phage integrase [Roseobacter sp. MED193]
 gi|85823455|gb|EAQ43664.1| Phage integrase [Roseobacter sp. MED193]
          Length = 419

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 91/278 (32%), Gaps = 17/278 (6%)

Query: 64  PRKKPTTLKWLISEYRK--SAHWGS--LAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119
           PR  P      IS  RK     WG+  +   ++   E + +++    G     K+   + 
Sbjct: 114 PRLAPRNASDQISMLRKMVEPEWGNRLVTEITKQDVERFLNKVAE--GRPRPSKLKPNNR 171

Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
              ++  K TP  A +    +R +F  A+  E+   NP          +   R  + E++
Sbjct: 172 ARKLQGWKPTPIRANRVGQLLRKMFNLAISWEWREDNPAAGFRMRIENSRE-RFLSHEEL 230

Query: 180 QQFKSFWSEGSQPRLA--FEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKTGTII 233
            +  +        R A      + +G R  +   A  +H   +  S      T K   + 
Sbjct: 231 ARLATALDHAEDQRAAGIIRMCMLTGARVGEVRTARFEHFNLDYGSWAKPADTTKQRKVH 290

Query: 234 TVELPDGFMKLLAMTP---IGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGV 289
            + +      ++            +    D       +   +++    +A + +   H +
Sbjct: 291 RIPISADVATIVRQRKLVVPKGSPWLFPGDTPGQPVKEIRRFWRNMQREAEIPDVRIHDL 350

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           R   A++    GA+   +    G   +   + Y    D
Sbjct: 351 RHTFASLLVSGGASLEMVGRLLGHSQMSTTQRYAHFMD 388


>gi|325285449|ref|YP_004261239.1| Tyrosine recombinase xerC [Cellulophaga lytica DSM 7489]
 gi|324320903|gb|ADY28368.1| Tyrosine recombinase xerC [Cellulophaga lytica DSM 7489]
          Length = 296

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 38/264 (14%), Positives = 93/264 (35%), Gaps = 24/264 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVE---SRKHTPSSAIQFL 137
              + ++  +++    +     G          +    +R+ +    S++ +  S  + +
Sbjct: 14  KKYSTHTVTAYKKDISEFTEFCGVNYQLTSIDDVPYAFVRNWIVVLVSKEISNRSINRKI 73

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-----EGSQP 192
            S++  +K+  +   V +NP    +  K   +   P++ E+++   +        EG + 
Sbjct: 74  ASLKAYYKFLQKIGRVVVNPLAKHKALKISKKIEIPFSFEEVEAALNEVDFEAGFEGERD 133

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPD-------GFMKL 244
           RL    L  +G+R  +     ++++     +IK   K      V L          +++ 
Sbjct: 134 RLIIGLLYATGVRRIELVNLKLKNVDVKAKTIKVLGKRNKERVVPLAPFVCPWVYSYLEN 193

Query: 245 LAMTPI--GKETFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSAHGVRKFSATISADA 300
               P+   +  FF+     K+  +              +    S H +R   AT   + 
Sbjct: 194 REALPVINDEAYFFLLKSGDKVYESLVYRIINRYFSKVSSKQKNSPHILRHTFATHLLNE 253

Query: 301 GATAHELMATYGWKTVDQAETYTK 324
           GA  + +    G  ++   + YT 
Sbjct: 254 GADLNSVKELLGHSSLASTQVYTH 277


>gi|152967083|ref|YP_001362867.1| phage integrase family protein [Kineococcus radiotolerans SRS30216]
 gi|151361600|gb|ABS04603.1| phage integrase family protein [Kineococcus radiotolerans SRS30216]
          Length = 344

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 43/302 (14%), Positives = 85/302 (28%), Gaps = 39/302 (12%)

Query: 61  INSPRKKPTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS---GDFDYRKITT 116
            +        L+  + +Y         L+ N+  ++     + +R     G  D  ++  
Sbjct: 13  PDPAGSGEAALRAAVGDYLAHLQVERGLSPNTLGAYRRDLARYVRFLAARGVHDPAQVDE 72

Query: 117 KHIRSGVESRKHTPSSAIQFLTS--------MRVLFKWAVRQEYVAINPCLSVERPKRKT 168
             +   V + +     A     S        +R   ++   +     +P + V  P    
Sbjct: 73  AVVSGFVVALRTGADGAAVLTASSAARTASAVRGWHRFLHAEGRSDQDPAVLVRPPTPPR 132

Query: 169 EGIRPWTKEDMQQFKSFW---------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-- 217
                 T E++++                  +     E L   G R S++    V  +  
Sbjct: 133 RLPTALTVEEVRRLLEVAGPGGEGERSPVALRDAALLEVLYGCGARISEAVGLDVDDVTP 192

Query: 218 ---QNNIFSIKTQKTGTIITVELPDGFMKLL-----------AMTPIGKETFFINNDKQK 263
                        K      V L       L           A    G    F+N    +
Sbjct: 193 EVLGEGGLVRLRGKGSRERLVPLGPCARSALERYLARSRPQLAAQGRGTAALFLNTRGDR 252

Query: 264 MNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
           ++        ++ A +AG+ +  S H +R   AT     GA    +    G  +V   + 
Sbjct: 253 LSRQSAWAVLQSAAQRAGIARAVSPHTLRHSFATHLLREGADVRVVQELLGHASVATTQV 312

Query: 322 YT 323
           Y 
Sbjct: 313 YA 314


>gi|320096216|ref|ZP_08027802.1| integrase/recombinase XerD [Actinomyces sp. oral taxon 178 str.
           F0338]
 gi|319976842|gb|EFW08599.1| integrase/recombinase XerD [Actinomyces sp. oral taxon 178 str.
           F0338]
          Length = 299

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 37/279 (13%), Positives = 89/279 (31%), Gaps = 27/279 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGVE---SRKHTPSSAIQF 136
              + ++  ++ +     +  +G           +T +  R+ +    +R    S+  + 
Sbjct: 17  RGASAHTVRAYTADLAAFLAFTGTDPADPGAASALTLRAARAWLADSVARGAARSTVSRH 76

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW--------SE 188
           + ++R    WA R+     +   ++   +      R   +++                  
Sbjct: 77  VAALRNFSAWAHREGLAPTDAAAALASARADQRLPRVVDQDEAAALLECARSRASADDPV 136

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-----TIITVELPDGF-- 241
             +     E +  +G+R S++C      +     +++    G         V   D    
Sbjct: 137 SVRDWAILELIYATGIRVSEACSLTTSSIDPAALTVRVLGKGDKERTVPFGVPARDALDQ 196

Query: 242 --MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISA 298
             ++      +G +  F+      ++             +AGV + + HG+R  +AT   
Sbjct: 197 WTVRARPSLAVGTDALFVGAKGGPIDPRVVRAMIHRMCARAGVRDIAPHGLRHSAATHLL 256

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
             GA    +    G  ++   + YT   D  RL     R
Sbjct: 257 QGGADLRAVQEILGHSSLATTQRYTH-VDAGRLSDVYRR 294


>gi|269216406|ref|ZP_06160260.1| putative phage integrase [Slackia exigua ATCC 700122]
 gi|269130665|gb|EEZ61743.1| putative phage integrase [Slackia exigua ATCC 700122]
          Length = 353

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 41/285 (14%), Positives = 79/285 (27%), Gaps = 36/285 (12%)

Query: 90  NSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKW 146
           ++   + +    I+R  G      +    +   + S     + P +  +    +    K+
Sbjct: 32  STVRDYHAVARLIVRYIGTCTVSDMEVMAVSDWMASMVRDGYAPKTCSKAFRLLSQALKF 91

Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR-LAFEFLLYSGLR 205
           AV Q  +  NPC   + P++         + +  +      +   P   A E  L +G+R
Sbjct: 92  AVGQGAIDKNPCDFCKPPRQIRSRFIALDRAERSRMLYLARQDDSPLGFAIEIALTTGMR 151

Query: 206 CSDSCRAGVQHLQ--------------NNIFSIKTQKT-GTIITVELPDG---------- 240
             + C                         F IK  K+   I T+ L             
Sbjct: 152 RGEVCALKWSDFSSRGTLTVRRALGNAEGGFYIKEPKSLSGIRTIPLASDTNEALGRLKG 211

Query: 241 --FMKLLAMTPIGKETFFINNDK---QKMNATQFSIWFKAKATKAGVNKSAHGVRKFSAT 295
                  +      + + +   +   Q  N  +    F       G   +   +R   AT
Sbjct: 212 AFLEANRSEGSASADGYIVGAGESGDQPYNPDRLGRDFAQFCRDNGFECTFRDLRHTFAT 271

Query: 296 ISADAGATAHELMATYGWKTVDQA-ETYTKGA-DRIRLGIKNSRR 338
               AG     + +  G   V      Y +   +  R       R
Sbjct: 272 FMVGAGVDVRTVASLLGHANVAMTLNIYAEADPEAKRRAAGAIER 316


>gi|189460431|ref|ZP_03009216.1| hypothetical protein BACCOP_01072 [Bacteroides coprocola DSM 17136]
 gi|189462397|ref|ZP_03011182.1| hypothetical protein BACCOP_03083 [Bacteroides coprocola DSM 17136]
 gi|189430903|gb|EDU99887.1| hypothetical protein BACCOP_03083 [Bacteroides coprocola DSM 17136]
 gi|189432863|gb|EDV01848.1| hypothetical protein BACCOP_01072 [Bacteroides coprocola DSM 17136]
          Length = 368

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 39/260 (15%), Positives = 83/260 (31%), Gaps = 13/260 (5%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAI 134
           Y +       ++++  +++ YF   +      D   +T + I S +      KH  ++  
Sbjct: 96  YLELLEQKRYSLSTIKAYKIYFSDFMEYHKGQDLDLLTVEDINSYMLHMVKEKHISATQQ 155

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
               +    +   VR+          + R K         ++E+M+   +  S     R 
Sbjct: 156 NMRINAIKFYYEKVRKGKRQY--YGGIARAKEYKALPEVLSREEMKSIFAQLSNRKH-RC 212

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-----ITVELPDGFMKLLAMTP 249
               +  +GLR S+      Q + +    I+    G       ++ +L +          
Sbjct: 213 MISLIYSAGLRRSELLNLTPQDIISERMLIRIAGKGKKCRYSLLSEKLLNELRAYYREYR 272

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHEL 307
             K  F      ++ + +      K  A KAG+      H +R   AT   + G     +
Sbjct: 273 PQKWLFEGEQAGEQYSPSALVKILKEAARKAGIKHRVHLHMLRHTFATHLLEQGTDLRTI 332

Query: 308 MATYGWKTVDQAETYTKGAD 327
               G   +     Y   ++
Sbjct: 333 QELMGHTDIKTTAIYLHVSN 352


>gi|167561039|ref|ZP_02353955.1| prophage integrase [Burkholderia oklahomensis EO147]
          Length = 376

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 43/320 (13%), Positives = 97/320 (30%), Gaps = 23/320 (7%)

Query: 18  HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISE 77
                ++     G RIR             ++A   S   R+     R    T    +  
Sbjct: 8   KNGPWWFDLSIDGSRIRQSSGTSDRRAAEELAAKVASDYWRQKKLGERPA-VTWDAAVVH 66

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--------T 129
           + K     +    S  + +     +  +    + R I  + I++ +E++           
Sbjct: 67  WLK----QNQHQRSLETTKQRLRWLTDQLKGENVRNIDRERIQALIETKAAEKYRGSPVA 122

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            ++  + + ++ V+      + ++   P   + + +  +  +   T+   Q+        
Sbjct: 123 GATVNRHMAALSVILHHCHAEGWIDAVP--PIRKLRENSARLTWLTRAQAQRLLEELPTH 180

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGFMKLL 245
            +    F     +GLR S+  +     +              K G +I+V L +  + +L
Sbjct: 181 LRQMTRFALA--TGLRESNVRQLEWAQVDRERALAWIHADQAKAGKVISVPLNEDALGVL 238

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATA 304
                  + +        +       W K    +AG+     H +R   A+    AG   
Sbjct: 239 REQQGQHKRYVFVYKGAPIGRIYNHAWQK-ACVRAGLSGLRFHDLRHTWASWHVQAGTPL 297

Query: 305 HELMATYGWKTVDQAETYTK 324
             L    GW +      Y  
Sbjct: 298 PILQQLGGWASYQMVLRYAH 317


>gi|291300674|ref|YP_003511952.1| integrase family protein [Stackebrandtia nassauensis DSM 44728]
 gi|290569894|gb|ADD42859.1| integrase family protein [Stackebrandtia nassauensis DSM 44728]
          Length = 345

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 49/296 (16%), Positives = 97/296 (32%), Gaps = 44/296 (14%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR--------KSGDFDYRKITTKHIRSG 122
               +  + +S      + ++  ++      +          ++G  D   ++   +R  
Sbjct: 3   FSVAVELFFQSRAPRKDSPHTTAAYRRDLLAVAEVVAAEVGCETGRVDCGGLSVSVMRRA 62

Query: 123 VESRKHTPS--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED-- 178
                 + +  S  +  +     F + V +  V  NP   V RPK      +P   ED  
Sbjct: 63  FAGFSASRAKSSIGRAWSVWNAFFSFLVGEGIVEGNPMSGVARPKAARPLPKPLRGEDAP 122

Query: 179 ---MQQFKS-----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKT 226
              ++   S           +       LL +GLR S+        +          ++ 
Sbjct: 123 DRLLEALMSGARAGRHPWPQRDVAVVAVLLLTGLRSSELLALRAGDVAGGAGERRLVVRD 182

Query: 227 QKTGTIITVELPDGFMKLLA--------MTPIGK------ETFFINNDKQKMNATQFSIW 272
            K G    V +      LLA          P G+      E  F+++  + +   Q    
Sbjct: 183 GKGGADRVVPVEGPLEVLLADYLASRRGRFPGGRWPLAPSEPLFVDHRGEALTRNQLQYL 242

Query: 273 FKAKATKAGVN------KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
            +     AGV+         H +R   AT    +GA+A E+M   G ++++ ++ Y
Sbjct: 243 VRQCYRFAGVDDAVQRGALVHALRHTFATRVGASGASAMEVMELLGHRSLNASQGY 298


>gi|189182982|ref|YP_001936767.1| site-specific tyrosine recombinase XerD [Orientia tsutsugamushi
           str. Ikeda]
 gi|189179753|dbj|BAG39533.1| integrase/recombinase XerD [Orientia tsutsugamushi str. Ikeda]
          Length = 309

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 40/287 (13%), Positives = 98/287 (34%), Gaps = 35/287 (12%)

Query: 73  WLISEYRKSA-HWGSLAVNSRISFESYFDQI------IRKSGDFDYRKITTKHIRSGVES 125
             + ++ ++     +++ NS ++++            I+                  +  
Sbjct: 2   DFLEQFLETVLAEKNVSANSLLAYKRDLQDFNDFLKSIQLQSSLAVTNNDIDSFIQHLLG 61

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +  +  S  + ++++R  + + + +  V  +   ++E P+  T+  +  + ++++    +
Sbjct: 62  KNLSFRSIARKISTLRQYYLFLLTENAVQADLVTNIEVPRYSTKLPKILSIKEIKVLIDY 121

Query: 186 W-----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----NNIFS---IKTQKTGTII 233
                 +EG +       L  +GLR S+     +  L+            +   K     
Sbjct: 122 CFKDTTAEGIRTLAMICLLYSTGLRVSELVSVKITDLKFDHNTGKIKNHFVILGKGNKER 181

Query: 234 TVELPD----------GFMKLLAMTPIGKETFFINNDKQK---MNATQFSIWFKAKATKA 280
            V + D           +    +     K + ++   K K   M    F+I  K  A  A
Sbjct: 182 LVIMNDLTGDVISKYLPYRDFFSPFKNAKNSVYLFPSKAKQGYMTRQNFAILLKHAAINA 241

Query: 281 GV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           G+   N S H +R   A+   + GA    +    G   +   + YT 
Sbjct: 242 GLSPDNVSPHILRHSFASHLLEGGADLKVIQELLGHVDISSTQIYTH 288


>gi|163796175|ref|ZP_02190137.1| putative integrase/recombinase protein [alpha proteobacterium
           BAL199]
 gi|163797772|ref|ZP_02191719.1| putative integrase/recombinase protein [alpha proteobacterium
           BAL199]
 gi|159176992|gb|EDP61556.1| putative integrase/recombinase protein [alpha proteobacterium
           BAL199]
 gi|159178634|gb|EDP63174.1| putative integrase/recombinase protein [alpha proteobacterium
           BAL199]
          Length = 276

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 38/267 (14%), Positives = 92/267 (34%), Gaps = 16/267 (5%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRK--ITTKHIRSGVESRKHTPSSAIQFLTSMRV 142
            +L+  ++ S+     +  R  G    R      +  +  + S   +  S  Q + ++R 
Sbjct: 8   RNLSPATQRSYLHAVAKFSRFFGRSPDRLGLEDVRAFQVHLVSTGISWPSLNQTVCALRF 67

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202
            +   +    +       +   +   +     + +++ +F    +   + R A      +
Sbjct: 68  FYGVTLGHGEIP----ERIPYAREPRKLPVVLSADEVVRFLEAVAS-LKSRAALTTAYAA 122

Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQ--KTGTIITVELPDGFMKLLA---MTPIGKETFFI 257
           GLR S+     V  + +    I+ +  K G    V L    + +L         +   F 
Sbjct: 123 GLRVSEVVALRVGDVDSGRMVIRVEHGKGGKDRYVMLSAQLLGILRTYWRLARPEHWLFP 182

Query: 258 NND-KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWK 314
             +  + ++        ++    AG++K  + H +R   AT   ++G     +    G  
Sbjct: 183 GREASKPIDVQVLHAACRSARAAAGLDKRVTVHTLRHSFATHLLESGTDIRIIQVLLGHA 242

Query: 315 TVDQAETYTKGAD-RIRLGIKNSRRIS 340
            +     YT+ ++  IR       R++
Sbjct: 243 NLSTTARYTQVSNGLIRRTESPLDRLA 269


>gi|304440443|ref|ZP_07400332.1| phage integrase [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304371195|gb|EFM24812.1| phage integrase [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 387

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 44/285 (15%), Positives = 96/285 (33%), Gaps = 39/285 (13%)

Query: 85  GSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSG----------VESRKHTPSSA 133
             L  N+   + SY  +QI    GD   + IT + ++               + + P + 
Sbjct: 80  HKLEENTISWYNSYLKNQINSFFGDKPIKNITERDVKDFNNHLMNYISERTKKPYAPKTI 139

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG-IRPWTKEDMQQFKSFWSEGSQP 192
              +T ++ LF  AV +  +  NP  +V+  K +     + ++  +M++   +  +    
Sbjct: 140 KHNITVLKSLFNVAVEEGILEKNPAENVKNVKVQKSVQDKYYSPSEMKKALKYAFKEDDV 199

Query: 193 R--LAFEFLLYSGLRCSDSCRAGVQHLQ--------NNIFSI--------KTQKTGTIIT 234
              L     +  GLR ++        ++        ++  ++        K  K      
Sbjct: 200 NFILCIVLTVTYGLRPAELRGLKWTKIEWTSKRVMIDDTITVVNYYGYDEKGTKNNEPRV 259

Query: 235 VELPDGFMKLLAMTPIGKETFF--------INNDKQKMNATQFSIWFKAKATKAGVNK-S 285
             L     +LL +    ++  F         +     +    F   +K    K G+    
Sbjct: 260 GILTPMIEELLKLQIKEQKKLFGKKCEFVVHSTTGDHLANKTFRDNWKKFCKKIGLRYLP 319

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
            +G+R  +AT+ A    +   +    G K +   E Y    +  +
Sbjct: 320 PYGLRHTTATLLASQNVSIPNIADVMGHKNLSTTEIYIHAIEEEK 364


>gi|301058440|ref|ZP_07199461.1| site-specific recombinase, phage integrase family [delta
           proteobacterium NaphS2]
 gi|300447496|gb|EFK11240.1| site-specific recombinase, phage integrase family [delta
           proteobacterium NaphS2]
          Length = 388

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 47/285 (16%), Positives = 85/285 (29%), Gaps = 18/285 (6%)

Query: 57  KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT 116
           K E      +   T   L  EY+            +  +++Y  +        +   +  
Sbjct: 80  KEEAEREADESRWTFDRLWREYKAQKTVYKGKGPDQNRYDNYLKEPFGGKEPKELLPLDV 139

Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS----VERPKRKTEGIR 172
             +R  +     +P +    L  +R L  +  ++       C      +E P+     I 
Sbjct: 140 DRVRLKMLKAGKSPQTVKLVLALLRRLANFGAKKRL-----CEGLRFIIEMPQVNNIKIE 194

Query: 173 PWTKEDMQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQK 228
             T E +        E   P+     + +LY+G+R S+  R     +        I+  K
Sbjct: 195 DLTAEQLDALMRAIDEDDHPQAGNLMKMVLYTGMRRSELFRLKWSDIDGQRSFIKIRDPK 254

Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA-- 286
            G    + L D    LL   P     +                       +AG+ K    
Sbjct: 255 GGVDQNIPLNDAARDLLKEHPSTGSPYVFPGRGGGQRVD-IHHQVNRIRDRAGLPKDFRA 313

Query: 287 -HGVRKFSATISADAGA-TAHELMATYGWKTVDQAETYTKGADRI 329
            HG+R   A++ A +G    + L      K+      Y    D  
Sbjct: 314 LHGLRHVYASMLASSGKVDLYTLQRLLTHKSPSMTMRYAHLRDEA 358


>gi|188995443|ref|YP_001929695.1| putative site-specific recombinase [Porphyromonas gingivalis ATCC
           33277]
 gi|188595123|dbj|BAG34098.1| putative site-specific recombinase [Porphyromonas gingivalis ATCC
           33277]
          Length = 401

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 42/255 (16%), Positives = 86/255 (33%), Gaps = 23/255 (9%)

Query: 91  SRISFESYFDQIIRKSGD-FDYRKITTKHIRSGV---ESRKHTPSSAIQFLTSMRVLFKW 146
                  Y       +G+ F+  +      R+ +          SS  + L++++  +K+
Sbjct: 29  YAQDLNRYAAFFSEHTGEVFEPSERDKDVARAWLFSLMEAGQKSSSVQRRLSALKSFYKY 88

Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-----FKSFWSEGSQPRLAFEFLLY 201
            V+   +  +P   +  PK++         ++M++      +    E  + RL  E L  
Sbjct: 89  MVKIGLIGQSPVRMLRGPKKERPLPVFVPNDEMEKVLNKPIREDDFEAVRDRLILETLYE 148

Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLL------AMTPIGK-E 253
            GLR S+        +++    I+   K      V        ++          +GK +
Sbjct: 149 VGLRRSEIATLKDNAVEDKAGCIRIIGKRNKERIVPFGKRLQDMIDNYRNIREEKVGKSD 208

Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGVNK----SAHGVRKFSATISADAGATAHELMA 309
            FF++ D + +         +     A V      S H +R   AT   + GA    +  
Sbjct: 209 FFFVSLDGRPLTGEVVYKIVR--TALANVPHLTKRSPHVLRHSFATEMLNHGADLMSVKE 266

Query: 310 TYGWKTVDQAETYTK 324
             G  ++     YT 
Sbjct: 267 LLGHDSLSTTVQYTH 281


>gi|30260592|ref|NP_842969.1| prophage LambdaBa04, site-specific recombinase phage integrase
           family protein protein [Bacillus anthracis str. Ames]
 gi|47525704|ref|YP_017053.1| prophage lambdaba04, site-specific recombinase phage integrase
           family protein protein [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49183443|ref|YP_026695.1| prophage LambdaBa04, site-specific recombinase phage integrase
           family protein protein [Bacillus anthracis str. Sterne]
 gi|65317857|ref|ZP_00390816.1| COG0582: Integrase [Bacillus anthracis str. A2012]
 gi|165870761|ref|ZP_02215414.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0488]
 gi|167634745|ref|ZP_02393064.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0442]
 gi|167641265|ref|ZP_02399518.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0193]
 gi|170688998|ref|ZP_02880199.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0465]
 gi|170707193|ref|ZP_02897649.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0389]
 gi|177654553|ref|ZP_02936409.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0174]
 gi|190567522|ref|ZP_03020435.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Bacillus anthracis Tsiankovskii-I]
 gi|227813101|ref|YP_002813110.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. CDC 684]
 gi|229604358|ref|YP_002865039.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0248]
 gi|254686817|ref|ZP_05150675.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family protein [Bacillus anthracis str. CNEVA-9066]
 gi|254724891|ref|ZP_05186674.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family protein [Bacillus anthracis str. A1055]
 gi|254738957|ref|ZP_05196659.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family protein [Bacillus anthracis str. Western North
           America USA6153]
 gi|254744545|ref|ZP_05202224.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family protein [Bacillus anthracis str. Kruger B]
 gi|254756197|ref|ZP_05208226.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family protein [Bacillus anthracis str. Vollum]
 gi|254762016|ref|ZP_05213865.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family protein [Bacillus anthracis str. Australia 94]
 gi|30253960|gb|AAP24455.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. Ames]
 gi|47500852|gb|AAT29528.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. 'Ames Ancestor']
 gi|49177370|gb|AAT52746.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. Sterne]
 gi|164713595|gb|EDR19119.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0488]
 gi|167510773|gb|EDR86166.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0193]
 gi|167529819|gb|EDR92567.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0442]
 gi|170127971|gb|EDS96842.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0389]
 gi|170667099|gb|EDT17861.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0465]
 gi|172080665|gb|EDT65748.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0174]
 gi|190561309|gb|EDV15281.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Bacillus anthracis Tsiankovskii-I]
 gi|227003859|gb|ACP13602.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. CDC 684]
 gi|229268766|gb|ACQ50403.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0248]
          Length = 374

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 47/292 (16%), Positives = 94/292 (32%), Gaps = 37/292 (12%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH 128
           TL   + E+ ++     +   +  +++   + +II   G    + +   H +  V+S   
Sbjct: 64  TLSEYLQEWLENTAKQRVRETTFTNYKRAINSRIIPVLGSHKLKDLKPLHGQRFVKSLID 123

Query: 129 ---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
              +P+        ++   + AVR E +  NP   VE P+ +      W+ E+ ++F + 
Sbjct: 124 EGLSPAYIEYIFIVLKGSLEDAVRWELLFKNPFQHVEIPRPRKVVNSTWSIEETKKFLNR 183

Query: 186 WSEGSQPRLA-FEFLLYSGLRCSDSCRAGVQHLQ---------------NNIFSIKTQKT 229
               +      F   L +G+R  +      ++                  N F     KT
Sbjct: 184 TKFENVIYYHLFLLALNTGMRRGEILGLKWKNFDLNEGKISVTETLIYDENGFRFTEPKT 243

Query: 230 -GTIITVELPDGFMKLLAMTPI--------------GKETFFINNDKQKMNATQFSIWFK 274
            G+   + +     K                       +  F     Q +     +  F 
Sbjct: 244 HGSKRLISIDQNLCKEFKSYKAKQNEFKLLFGQSYEDNDLVFAKETGQPILPRTMTTTFN 303

Query: 275 AKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
               KA V +   H +R   ATI    G     +    G  ++    +TY+ 
Sbjct: 304 QFIKKADVPQIRFHDLRHTHATILLKLGINPKIVSERLGHSSIKTTLDTYSH 355


>gi|302134313|ref|ZP_07260303.1| putative bacteriophage integrase [Pseudomonas syringae pv. tomato
           NCPPB 1108]
          Length = 363

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 56/332 (16%), Positives = 104/332 (31%), Gaps = 35/332 (10%)

Query: 17  RHGKIIY-YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK----KPTTL 71
           + GK  +  F    G  IR      S     Y +A       R      ++     P   
Sbjct: 4   KRGKTWWISFTAADGTYIR-----RSAGTEDYAAAKAIEQEHRGAAWRQKELGVDPPRMF 58

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG---VESRKH 128
           + ++ EY   A     +  +   +      ++   G      +  K IR           
Sbjct: 59  EEVMIEYLDHARQTQRSFAT-TQYR--VKALLEHFGGRVMNDLAGKDIRKYSSLRMKAGK 115

Query: 129 TPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF--KSF 185
           + ++  + L ++     W AV  E+   NP       +     +R  T+ +++    ++ 
Sbjct: 116 SAATVNRELAALSAAINWCAVELEWKLPNPVKG-RTLREAESRVRWLTRAEVESLCREAR 174

Query: 186 WSEGSQPRLAFE-FLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ--KTGTIITVELPDG 240
              G     AF    + +G R ++      + +   N +  ++    K G   ++ L +G
Sbjct: 175 RQRGGDMLEAFIRLAVNTGCRKNELVGLEWRRVDIANRLIYLEGANTKAGKRRSIPLNEG 234

Query: 241 FMKLLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKF 292
            M  L                 FI  +  K+        F     +AG+ +   H +R  
Sbjct: 235 AMAALKGRMEFRAEHNPASPWVFIRKNGDKVLDLSEG--FNGACDRAGIKDFVIHDLRHT 292

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324
            A   A AG    E+    G  T    E Y  
Sbjct: 293 CAAWLATAGVPLIEIRDLLGHSTTQMTEKYAH 324


>gi|299538024|ref|ZP_07051310.1| integrase-recombinase protein [Lysinibacillus fusiformis ZC1]
 gi|298726606|gb|EFI67195.1| integrase-recombinase protein [Lysinibacillus fusiformis ZC1]
          Length = 298

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 46/264 (17%), Positives = 95/264 (35%), Gaps = 12/264 (4%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHT 129
           + +++EY  S    + A  +   + S+ ++   +    +   +T++ +   V        
Sbjct: 21  RKILNEYLLSLKLANKAEATISKYRSFLERFCSEC-LVELDSLTSEDVLKWVNKFSVGKK 79

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK-SFWSE 188
            S+ I  L+ +   FK+ + ++Y+          PK      R  T+++  + K +    
Sbjct: 80  ESTVINVLSILSSFFKFCLAEDYMDSIVMRKRWVPKLPQPLPRFLTEQEYARVKMASEQL 139

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-----VELPDGFMK 243
             + R    FL  SG R S+     +Q++     + + +  G  I      VE       
Sbjct: 140 SLRDRAIVLFLFTSGCRRSEVANLLIQNVDVKQRTAEVRGKGKKIRKVHFSVECALVLKD 199

Query: 244 LL-AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADA 300
            L   + +  E  F+N   +K+  +            AG+ +S   H  R   AT     
Sbjct: 200 YLWTRSGVATEPLFLNKYGEKLQQSGIYEITTKLGRLAGLEQSLHPHCCRHTFATNMLAK 259

Query: 301 GATAHELMATYGWKTVDQAETYTK 324
           GA    +    G   ++    Y +
Sbjct: 260 GAELEFIADEMGHTNLNTTRVYAR 283


>gi|288941805|ref|YP_003444045.1| tyrosine recombinase XerC [Allochromatium vinosum DSM 180]
 gi|288897177|gb|ADC63013.1| tyrosine recombinase XerC [Allochromatium vinosum DSM 180]
          Length = 320

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 36/274 (13%), Positives = 88/274 (32%), Gaps = 24/274 (8%)

Query: 75  ISEYRKS-AHWGSLAVNSRISFESYFDQII------RKSGDFDYRKITTKHIR---SGVE 124
           I  +    AH   L+ ++  ++    +QI        + G      +    IR   +   
Sbjct: 19  IERFLAHLAHERQLSEHTVRAYRHDLNQIAVWLADQGEPGAEPIASLDEAGIRRYTAWRH 78

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
            +  +  +  + L+S+R  ++W +R+     NP + +  PK   +    +  + +     
Sbjct: 79  RQGVSGKTLQRELSSLRGFYRWLLRENQAVANPAVGLRAPKSPRKLPHTFDADQLGALLD 138

Query: 185 FWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---IITV--- 235
              E     +     E    SGLR ++     +  +  +   +     G+    + V   
Sbjct: 139 PVDEDPLMIRDTAMVELFYSSGLRLAELVSIDLGDIDMSEGELGVIGKGSKSRRVPVGRK 198

Query: 236 ---ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK--AGVNKSAHGVR 290
               +        A+    +   F++    +++           A +  A  +   H +R
Sbjct: 199 AREAIERWLAVRSALADRDERALFVSLRGGRIHPRTVEKRLARWAVERGASRHLHPHLLR 258

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              A+   ++      +    G   +   + YT 
Sbjct: 259 HSFASHLLESSGDLRAVQELLGHTDIGTTQIYTH 292


>gi|160874309|ref|YP_001553625.1| integrase family protein [Shewanella baltica OS195]
 gi|217972349|ref|YP_002357100.1| integrase family protein [Shewanella baltica OS223]
 gi|160859831|gb|ABX48365.1| integrase family protein [Shewanella baltica OS195]
 gi|217497484|gb|ACK45677.1| integrase family protein [Shewanella baltica OS223]
 gi|315266542|gb|ADT93395.1| integrase family protein [Shewanella baltica OS678]
          Length = 287

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 41/267 (15%), Positives = 87/267 (32%), Gaps = 21/267 (7%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----SRK 127
             L+ ++         +  +R ++     Q+ +   +     IT + + +        R 
Sbjct: 2   SSLLQQFHDEIRLRGYSARTRSAYLRAITQL-QHYANQPLDSITDEQLTAYFRYLNLERH 60

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           H+ ++    L  +   ++  + +++      + +  PKR  +  +  + +D+        
Sbjct: 61  HSRATLKLQLNGIHFFYEHVLGRDF-----TVQLSLPKRPHKLPQLLSCQDIAALL-CHC 114

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLL 245
           +  + R         GLR S+     V  +      +K    K      V +    + LL
Sbjct: 115 QNLKQRAMLALCYGCGLRVSELTHIKVADIDGQRQLLKVCQGKGAYDRLVIISPTLLTLL 174

Query: 246 A---MTPIGKETFFINNDK---QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS 297
                     E  F +        ++ + F       A  A +    S H +R   AT  
Sbjct: 175 RQYWRAYHPVEWLFASTYHDVVYPLHESTFRKALAKAARLASITKPCSPHSLRHAYATHQ 234

Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324
             AG   H+L A  G  ++   E Y  
Sbjct: 235 LQAGMPLHQLQAQLGHHSIKSTERYLH 261


>gi|91786958|ref|YP_547910.1| phage integrase [Polaromonas sp. JS666]
 gi|91696183|gb|ABE43012.1| phage integrase [Polaromonas sp. JS666]
          Length = 358

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 44/313 (14%), Positives = 92/313 (29%), Gaps = 45/313 (14%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS--G 107
           +    P+    + P   P     L+  Y +       LA  +   +     ++   +   
Sbjct: 7   IASGVPEDRPASVPESHP-----LVERYLEHVRVEKRLASRTVELYALDLHKLEANARQA 61

Query: 108 DFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP 164
                ++ + H+R  V        +       L+  R  + W  R+  V  NP   V  P
Sbjct: 62  GVALTEVHSTHMRRWVAQMHGAGRSGRGIALILSGWRGFYAWLGREGLVPANPVQDVRSP 121

Query: 165 KRKTEGIRPWTKEDMQQFKSFWS-------EGSQPRLAFEFLLYSGLRCSDSCRA----- 212
           K      +  + ++  Q  S+ S         ++ +   E L   GLR  +         
Sbjct: 122 KVAKPLPKALSVDEAVQLASYQSDDEDDPHLEARDQCITELLYGCGLRIGELVGLDVRAS 181

Query: 213 ----GVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM---------------TPIGKE 253
               G   +      +   K     +V +    ++ L                      +
Sbjct: 182 AQARGWVDMDAAEAHV-LGKGSKRRSVPVGRQALQALHAWLALRGDWAGEGAAAEGAAGQ 240

Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATY 311
             FI+    ++      +  K ++ KAG+      H +R   A+    +      +    
Sbjct: 241 ALFISQRGARLTPQHIRLRLKRRSLKAGLATPVHPHMLRHSFASHVLQSSGDLRAVQELL 300

Query: 312 GWKTVDQAETYTK 324
           G   +   + YT+
Sbjct: 301 GHANITTTQVYTR 313


>gi|83313349|ref|YP_423613.1| site-specific tyrosine recombinase XerC [Magnetospirillum
           magneticum AMB-1]
 gi|82948190|dbj|BAE53054.1| Integrase [Magnetospirillum magneticum AMB-1]
          Length = 314

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 54/282 (19%), Positives = 95/282 (33%), Gaps = 23/282 (8%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESR--- 126
            +WL SE R S+H          +F ++  + +  +        +     R+ +  R   
Sbjct: 22  WQWLGSERRASSHTLDGYGRDLAAFLTFLTEHLAAEPDLAALASLGAGDFRAFLARRTQD 81

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC-LSVERPKRKTEGIRPW-TKEDMQQFKS 184
               SS  + ++++R  FK+  R + V  NP   +V+ P+      +P    E ++   S
Sbjct: 82  GLGRSSLARLMSTLRGFFKFLDRHDLV-HNPALKAVKSPRPPKSVPKPLAPDEALEALSS 140

Query: 185 FWSEGSQPRLA------FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
                 +P LA      F  L  +GLR  ++     + L      + T K      V + 
Sbjct: 141 AGELHDEPWLAARDVALFTLLYGAGLRLGEALSLTRRDLPKGDTMVITGKGNKQRVVPVL 200

Query: 239 ----DGFMKLLAMTPIGKET---FFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGV 289
               D     L   P   E     F+      +N        +      G+    + H +
Sbjct: 201 PVVRDAIADYLKRLPYPAEPTDPIFLGARGGPLNPGVVQRQMRRLRQMMGLPETATPHAL 260

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           R   AT     G     +    G  ++   + YT   D  RL
Sbjct: 261 RHSFATHLLAGGGDLRTIQELLGHSSLSTTQRYT-EVDAARL 301


>gi|227892233|ref|ZP_04010038.1| phage integrase/recombinase [Lactobacillus salivarius ATCC 11741]
 gi|227865955|gb|EEJ73376.1| phage integrase/recombinase [Lactobacillus salivarius ATCC 11741]
          Length = 322

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 32/262 (12%), Positives = 86/262 (32%), Gaps = 14/262 (5%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS- 132
            + ++  +      +  +   +    D  + +    + +++TT+ +R  +   +   +S 
Sbjct: 47  YLQDFLAAKRVEGCSDRTEKYYRMTLDTFMNEI-QKNIQQVTTEDLRKYLTDYQKKRNSS 105

Query: 133 ---AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
                         F W   ++ +  +P   + + K        ++ E++++ +   +E 
Sbjct: 106 KVTIDNIRRIFSSFFSWLEDEDIIIKSPVRRIHKVKTPNNIKETYSDEELEKLRDNCTE- 164

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG-----FMKL 244
            +     + L  +G+R  +  R     +            G    +   D          
Sbjct: 165 IRDLALIDLLASTGMRVGELVRLNRDDIDFEERECVVLGKGNKERIVYFDARSKLHLKNY 224

Query: 245 LAMTPIGKETFFIN--NDKQKMNATQFSIWFKAKATKAGVNKS-AHGVRKFSATISADAG 301
           L          F++    +++M+        +    + G+ K+  H  R+  AT + D G
Sbjct: 225 LLSRSDDNNALFVSLKKPQKRMSIGGIENRIRQLGREIGITKAHPHKFRRTLATNAIDKG 284

Query: 302 ATAHELMATYGWKTVDQAETYT 323
               +L    G + +D    Y 
Sbjct: 285 MPIEQLQKLLGHERIDTTLHYA 306


>gi|293602487|ref|ZP_06684933.1| phage integrase family site-specific recombinase [Achromobacter
           piechaudii ATCC 43553]
 gi|292819249|gb|EFF78284.1| phage integrase family site-specific recombinase [Achromobacter
           piechaudii ATCC 43553]
          Length = 335

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 44/280 (15%), Positives = 85/280 (30%), Gaps = 41/280 (14%)

Query: 85  GSLAVNSRISFES--YFDQIIRKSGDFDYRKITTKHIR---SGVESRKHTPSSAIQFLTS 139
              + ++   +    +F   +         KI   HIR   + + ++   P S  + L +
Sbjct: 36  RRYSPHTLDGYRRELHFLHELADRAKLPLDKIANGHIRQFIARLHAQGRGPRSLARTLAA 95

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK-------SFWSEGSQP 192
            R  ++W      +A NP   V  PK      +  + E  Q          +      + 
Sbjct: 96  WRGFYQWWAPAVDLAGNPVAGVRAPKAPRGLPKALSVEQTQALLDRPAAKVANEPVALRD 155

Query: 193 RLAFEFLLYSGLRCSDSCRA-------------GVQHLQNNIFSIKTQKTGTIITVELPD 239
           +  FE L  SGLR S+                 G   L      +   K G   +V +  
Sbjct: 156 QAMFELLYSSGLRLSELVGLDLRYTRTADYESAGWLKLDEAEVEV-LGKGGKRRSVPVGQ 214

Query: 240 GFMKLL-------------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NK 284
             +  L             +  P      F+    ++++     +     A  AG+  + 
Sbjct: 215 AALAALSKWIAARPQLAPPSPAPQDAAALFLGARGKRISPRVVQLQLAQFAQAAGLPTHV 274

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             H +R   A+    +      +    G   +   + YT+
Sbjct: 275 HPHVLRHSFASHVLQSAQDLRAVQEMLGHANISTTQIYTR 314


>gi|167571459|ref|ZP_02364333.1| phage-related integrase [Burkholderia oklahomensis C6786]
          Length = 342

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 55/337 (16%), Positives = 106/337 (31%), Gaps = 34/337 (10%)

Query: 9   PFVTKERTRHGKIIYYFRKG--HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
           P         G   YY+  G   GRR   P   +        + L G       + S   
Sbjct: 12  PRFRSRTNADGTKRYYYDHGAIEGRRFLEPLGTDRVVALQRWAELEGKR-----VPSAET 66

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
              T   L   YR+       ++ +R  ++ +  ++    GD +   +T   + S   + 
Sbjct: 67  TRHTFAMLDRAYRQ-RELPHKSLATRRMYDLFLTRLAAVIGDRELDTLTPADVASIWRAT 125

Query: 127 KHTPS--SAIQFLTSMRVLFKWAVRQEYVA-INPCLSVERPKRKTEGIRPWTKEDMQQFK 183
                  +A +    + ++       + +   NPC  V R K++T        +++  + 
Sbjct: 126 AEKRGVVTANRTKAVLSLVLNCGRLWDMMTIANPCAGV-RGKKETGRQDILIDDEL--YA 182

Query: 184 SFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
           S ++   +P R A +       R +D       ++       +T+KT   +T+++     
Sbjct: 183 SVYAVADEPLRNAMDLADLCAQRPADILGVQRSNIVKGNLIFRTRKTRAFVTIQITGELA 242

Query: 243 KLLAMTPI-------GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSAT 295
           KL+                   + +   +   Q    F     KAG+NK+     KF   
Sbjct: 243 KLIERLLAWRGSKVDVSPYLLRDEEGYPLTKGQLRSRFDKAREKAGINKA-----KFQFR 297

Query: 296 ISADAGATAHEL-------MATYGWKTVDQAETYTKG 325
                G T   +           G         Y +G
Sbjct: 298 DLRARGVTHKTIDEGLEAGQRLAGHSGPGMTARYVRG 334


>gi|313139852|ref|ZP_07802045.1| site-specific tyrosine recombinase XerC [Bifidobacterium bifidum
           NCIMB 41171]
 gi|313132362|gb|EFR49979.1| site-specific tyrosine recombinase XerC [Bifidobacterium bifidum
           NCIMB 41171]
          Length = 351

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 51/300 (17%), Positives = 100/300 (33%), Gaps = 60/300 (20%)

Query: 85  GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGV--ESRKHTPSSAIQFLTS 139
             L+ N+  ++ +   + +      G  D R++TT  +R  +  E+R H  SS  + + S
Sbjct: 35  RGLSGNTVKAYGTDVRECLHALASRGIADLRQVTTDDLRGWMAFETRDHARSSMARKVVS 94

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ------------------ 181
           +R  F WA     +  +P   +  PK         T+   ++                  
Sbjct: 95  VRSFFAWAHEHGRIEADPAAVLMTPKLPDTLPSVLTEAQAERLMDRVDDDASLHAASSQR 154

Query: 182 FKSFWSE--------------------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221
           +++   E                      +     E L  +G+R ++     +  +  + 
Sbjct: 155 YETRHDEMPRLDSAHRGEGMSQRDEVVALRDAAMLELLYATGIRVAELVGLDIGDVDWSH 214

Query: 222 FSIK-TQKTGTIITVELPDGFMKLLA---------------MTPIGKETFFINNDKQKMN 265
            +I+ T K      V   D   K LA                  +     F+    ++++
Sbjct: 215 RTIRVTGKGSKQRVVPFGDPAEKALAGWKEHGRPLILRRAGAGTLDTAALFLGMRGRRID 274

Query: 266 ATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
                      A ++GV + S H +R  +AT   D GA   E+    G  ++   + YT 
Sbjct: 275 QRIVRDVVHRAARESGVPDISPHSLRHSAATHMLDGGADLREVQEMLGHSSLRTTQRYTH 334


>gi|225181363|ref|ZP_03734807.1| integrase family protein [Dethiobacter alkaliphilus AHT 1]
 gi|225167944|gb|EEG76751.1| integrase family protein [Dethiobacter alkaliphilus AHT 1]
          Length = 299

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 38/267 (14%), Positives = 89/267 (33%), Gaps = 27/267 (10%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDF------DYRKITTKHIRSGVESRKHTPSSAIQFLT 138
            + + ++  ++     Q  +           D   +  +H  + +++  +   +  + L 
Sbjct: 16  KNASPHTIRNYAEDLGQFFQFLEKEGASFPQDLDYLAIRHFLALMQAHGYERRTIARKLA 75

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194
           ++R   +   R+ Y+A     ++  P+   +  +    +++ +  +        G +   
Sbjct: 76  AIRSFLRHLNREGYLADTSWTTISTPRIGKKLPKFLYVDEVFRLLAAPDSQTPAGLRDVA 135

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-------------TIITVELPDGF 241
             EFL  SG+R S+     +Q L  N         G               +   L  G 
Sbjct: 136 ILEFLYSSGVRVSELVALELQSLDLNRGQAIVMGKGGCERLVHLGRFARRSLLAYLEQGR 195

Query: 242 MKLLAMTPIGKE--TFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS 297
            ++L     G      ++N    +++        +    +  + K  S H +R   AT  
Sbjct: 196 PEILRKNADGDREGALWLNKYGTRLSDRGVRRIVEKYVRQVSLAKGISPHSIRHSFATHL 255

Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324
            +AGA    +    G   +   + YT 
Sbjct: 256 LNAGADLRVVQELLGHVNISTTQIYTH 282


>gi|209883739|ref|YP_002287596.1| tyrosine recombinase XerC [Oligotropha carboxidovorans OM5]
 gi|209871935|gb|ACI91731.1| tyrosine recombinase XerC [Oligotropha carboxidovorans OM5]
          Length = 355

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 45/319 (14%), Positives = 104/319 (32%), Gaps = 36/319 (11%)

Query: 50  ALTGSTPKREYINSPRKKPTT--LKWLISEYRKS-AHWGSLAVNSRISFESYFDQ----I 102
           A   S P+ +        P T   +  ++ +         L+  +  ++E    Q    +
Sbjct: 29  AKRTSKPQAQPDPGSIALPATGDFQAEVARWLAHLKSERRLSPKTLEAYERDLRQCIGFL 88

Query: 103 IRKSGD----FDYRKITTKHIRSGVESRKHT---PSSAIQFLTSMRVLFKWAVRQEYVAI 155
               G       +  I    +R+ + SR+       S ++ L  +R   ++  R+    +
Sbjct: 89  AEHWGKPVSLASFAGIEATDVRAFMASRRSHDVAGRSLMRALAGLRSFGRFLEREGKGKV 148

Query: 156 NPCLSVERPKRKTEGIRPW--------TKEDMQQFKSFWS-EGSQPRLAFEFLLYSGLRC 206
               ++  PK      +P         T+ +++  +       ++       L  SGLR 
Sbjct: 149 GALSAIRAPKISKSLPKPLAVSAARHLTEAEIRAGEDRPPWIWARDAAVMALLYGSGLRI 208

Query: 207 SDSCRAGVQHL----QNNIFSIKTQKTGTIITV---ELPDGFMKLLAMTP---IGKETFF 256
           S++     + +    + ++ ++  +   T +      + D     +A  P      +  F
Sbjct: 209 SEALGLARRDIPEPGRGDVITVTGKGNKTRMVPVLQAVLDAVQDYIAQCPYELSPDKPVF 268

Query: 257 INNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWK 314
           +      ++     +  +      G+    + H +R   AT     G     +    G  
Sbjct: 269 VGARGGPLSPRIIQLTMERLRGALGLPDSATPHALRHSFATHLLSRGGDLRAIQELLGHA 328

Query: 315 TVDQAETYTKGADRIRLGI 333
           ++   + YT G D  RL  
Sbjct: 329 SLSTTQIYT-GIDAERLMD 346


>gi|116492336|ref|YP_804071.1| integrase [Pediococcus pentosaceus ATCC 25745]
 gi|116102486|gb|ABJ67629.1| Integrase [Pediococcus pentosaceus ATCC 25745]
          Length = 384

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 66/381 (17%), Positives = 130/381 (34%), Gaps = 51/381 (13%)

Query: 13  KERTRHGKIIYYFRKGHG-----RRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK 67
           K  T+ GKI Y F+   G      R +                L+    + E       +
Sbjct: 6   KYTTKTGKIRYEFQVYAGVDSLTGRQKTTRRRGFKTRKEASIVLSRLELEIEKRGLQEDE 65

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR 126
               + + +E+ +     ++  ++    +   +  ++   GD     IT    +  V   
Sbjct: 66  RRFFRDVCAEWMEQYR-LTVRESTLEKTQRIINIHVLPAFGDMVINNITPNVCQKVVNKW 124

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP----WTKEDMQQF 182
                S  ++L    ++F +A+R EYV  NPC  V  P+ + +        WT++++  F
Sbjct: 125 FLEAKSYKKWLNYASMIFDYALRAEYVGRNPCTLVTMPRVQEQAGEKLENFWTRDELNTF 184

Query: 183 KSFWSEGS--QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT----------- 229
             + +     +    F  L YSG+R  +      + +     +++  KT           
Sbjct: 185 FDYVTPERDVEQFTMFRVLAYSGIRKGELLALTWKDINFEDNTLRVNKTLTQGLGGKLIV 244

Query: 230 ------GTIITVELPDGFMKLLAMTP-IGKETF--------------FINNDKQKMNATQ 268
                     T++L D  M+ L     + +ETF              F +N     +   
Sbjct: 245 QPPKSRAGRRTIDLDDSTMRYLRQWKGVQRETFLGMGFNTNNVDQLVFASNRNHFRSMNT 304

Query: 269 FSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA---ETYTK 324
            + W        G+   S HG R   A++   +G    E     G    D +   + YT 
Sbjct: 305 PTKWLNKAIKATGLKHISIHGFRHTHASLLYQSGVGLKETQQRLGHSRADSSVTLDVYTH 364

Query: 325 GADRIRLGIKNSRRISSVVDS 345
             ++  +     +R  + V++
Sbjct: 365 TTEQQNVA--ALQRFENYVEA 383


>gi|313157227|gb|EFR56657.1| site-specific recombinase, phage integrase family [Alistipes sp.
           HGB5]
          Length = 402

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 43/210 (20%), Positives = 79/210 (37%), Gaps = 19/210 (9%)

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVER--PKRKTEGIRPW-TKEDMQQFKSF---WSE 188
            +  ++      AVR++ +  NP   +E+    RK E +R + T E++Q          E
Sbjct: 186 NYYRALNGALNSAVRKKKMKANPFNELEKSEKIRKPESMRSYMTIEEVQALIDTPMPHEE 245

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT----QKTGTIITVELPDGFMKL 244
               + A+ F  + GLR SD  +     +  +    +     +KT   I + L    +K 
Sbjct: 246 YEIVKCAYLFSCFCGLRISDIIKLKWNDVFVDRGQYRLAVSMKKTKEPIYLPLSPEALKW 305

Query: 245 L--AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADA 300
           +        ++  F        +A    +  K  A  AG++K    H  R   AT+    
Sbjct: 306 MPERGGKSSEDNVFDL-----PSANTIRMQLKPWAKAAGISKRFSYHTSRHTFATMMLTL 360

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIR 330
           GA  + +    G   V   + Y K  ++ +
Sbjct: 361 GADLYTVSKLLGHADVKMTQVYAKIINKKK 390


>gi|309801163|ref|ZP_07695292.1| site-specific recombinase, phage integrase family [Bifidobacterium
           dentium JCVIHMP022]
 gi|308222052|gb|EFO78335.1| site-specific recombinase, phage integrase family [Bifidobacterium
           dentium JCVIHMP022]
          Length = 332

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 44/330 (13%), Positives = 100/330 (30%), Gaps = 49/330 (14%)

Query: 59  EYINSPRKKPTTLKWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFDYRKITTK 117
           E     R+   TL      Y +       +A  +    E  F  +    G     ++T +
Sbjct: 2   EGGTVQRRTSYTLAEYCDRYLEMRRAKKEVAETTIGKQEWQFKAVCHHIGHVKLEEVTPR 61

Query: 118 HIRSGVES---------RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168
            +     +         RK   S   Q   ++ ++F+ A+++  +  NPC   + PK  T
Sbjct: 62  MLNDVYVAMMQGDTLSGRKSGGSYVNQIHDNITLVFQHAIKEGILVSNPCDKADPPKMDT 121

Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---------- 218
           +  +    + +++  +          A+   +  GLR  + C      +           
Sbjct: 122 KPKKAIHPDKVRELVAELDPTDPHECAYLLAVTLGLRRGEICGLSWNDIDFERNIVDISH 181

Query: 219 --NNIFSIKTQK-TGTIITVELPD----GFMKLLAMTP-------------------IGK 252
             +N+ ++K  K    +  + L        +K+                           
Sbjct: 182 SYDNLGNLKGTKIKAGMRLLPLSPVTKDALLKMKEAQAAQFAKTNSFRKPEEGYLEQTED 241

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATY 311
                 +  +++ +   S W+     + G+   + H +R    T+ A  G     +    
Sbjct: 242 GPVIAGHYGERVQSGTMSRWWSVDRKEFGLEGYTLHELRHTYLTMLAMGGVHPKVMQELA 301

Query: 312 GW-KTVDQAETYTK-GADRIRLGIKNSRRI 339
               +    + YT    D  R  +    ++
Sbjct: 302 SHYSSQITMDIYTHVNMDAKRAAVDAVSKL 331


>gi|254295225|ref|YP_003061248.1| integrase family protein [Hirschia baltica ATCC 49814]
 gi|254043756|gb|ACT60551.1| integrase family protein [Hirschia baltica ATCC 49814]
          Length = 402

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 60/351 (17%), Positives = 123/351 (35%), Gaps = 47/351 (13%)

Query: 19  GKIIYYFRKGHGRRIR---------LPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
           GK++++ R+                L  P   +   A   A       ++ I+ PRKK  
Sbjct: 38  GKVVFFVRQSRFTETGTTLDITIGALGQPWTPS--NARSQATLLLLQLKQGID-PRKKTN 94

Query: 70  TLKWLISEYRK---SAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVES 125
            + + I+ Y +       G     +    ES F   I    G    +++ T HI + +  
Sbjct: 95  EINYTIASYFEVFCGQTNGRKKPRTIKLEESLFKRHISPHLGKVKLKELNTTHISNFMSK 154

Query: 126 ---------RKHTPS----------SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
                     K  P           +A +    +  +   AV+   +  NP  +V + + 
Sbjct: 155 VANPDKIIVEKTKPRGKAVVSGGKPTANRAHDILSAMLNHAVKAGLLDKNPAKNVAKFRT 214

Query: 167 KTEGIRPWTKEDMQQF----KSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQ-- 218
           + +  R  T+ ++Q+     +   S+G+      A + L+++G R S+      +++   
Sbjct: 215 EKKE-RFLTEVEIQRLGQELRQAGSDGTNTYAIEALKVLMFTGARKSEILSLRWEYIDWQ 273

Query: 219 NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET--FFINNDKQKMNATQFSIWFKAK 276
            ++ ++   K     ++ LP   + +L   P        F +ND          IW + +
Sbjct: 274 RSLANLPDSKNDMK-SIVLPSVVISILNNLPNKGTNGWVFPSNDGNTHFTGLQKIWNRIR 332

Query: 277 ATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
                 +   H +R   A++ A  G + + L            + Y   AD
Sbjct: 333 TNANLRDVRIHDLRHTFASVGAAEGKSLYILGKALTHANPATTQRYAHLAD 383


>gi|325983587|ref|YP_004295989.1| integrase family protein [Nitrosomonas sp. AL212]
 gi|325533106|gb|ADZ27827.1| integrase family protein [Nitrosomonas sp. AL212]
          Length = 345

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 49/316 (15%), Positives = 104/316 (32%), Gaps = 17/316 (5%)

Query: 17  RHGKIIY-YFRKGHGRRIR-LPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           + GK  +  F   +G R+R      + T    +   L       E + +  K+  T    
Sbjct: 5   KRGKTWWIRFTAPNGERVRCSAATEDKTQAQEFHDKLKAELWLVERLGN--KQKRTWDEA 62

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
             ++       +     +     +  Q +RK    +  ++   HI +  ++++ +PS+A 
Sbjct: 63  ACKFLLETQHKATHERDKEKLR-WLQQFLRKKLLNEIDRMLIDHI-AHTKAKETSPSTAN 120

Query: 135 QFLTSMRVLFKWA-VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
           + L  +R + + A    E+    P   +         +R  T   ++          Q  
Sbjct: 121 RHLALIRAILRKACYDWEWTDKVP--KIRLFPEPKHRVRWLTPGQVKMLLKELPVHQQDM 178

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGFMKLLAMTP 249
           + F     +GLR S+        +              K    I V L    + +L    
Sbjct: 179 VIFALS--TGLRQSNVINLEWSQVDLERKAAWVHPDQAKARKAIHVPLNSIALAVLFRQS 236

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELM 308
               +      K +  +   +  ++    +AG++    H +R   A+  A  G   + L 
Sbjct: 237 GKHPSRVFT-YKDRSISWANTSAWRNALKRAGIDNFRWHDLRHTWASWLAQQGTPMNVLQ 295

Query: 309 ATYGWKTVDQAETYTK 324
              GW++ +    Y  
Sbjct: 296 ELGGWESEEMVRRYAH 311


>gi|192288937|ref|YP_001989542.1| tyrosine recombinase XerD [Rhodopseudomonas palustris TIE-1]
 gi|192282686|gb|ACE99066.1| tyrosine recombinase XerD [Rhodopseudomonas palustris TIE-1]
          Length = 339

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 54/318 (16%), Positives = 107/318 (33%), Gaps = 41/318 (12%)

Query: 51  LTGSTPKREYINSP-RKKPTTLKWLISEYRKS-AHWGSLAVNSRISFESYFDQI------ 102
            T + P+ E   +P R    +   L   +    A     + N+  ++      +      
Sbjct: 9   RTAALPEPEAQAAPLRPASYSDAGLTELFLDMIAAEQGASANTLDAYRRDLADLSHFLSR 68

Query: 103 -IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV 161
                G  D   +  +   + +++R    SS  + L+++R LF++ + +   A +P   +
Sbjct: 69  RRLSIGSADTAAL--RSYLADLDNRGFATSSVARRLSALRHLFRFLLSERIRADDPAAIL 126

Query: 162 ERPKRKTEGIRPWTKEDMQQFKS-------FWSEGSQPRLA-----FEFLLYSGLRCSDS 209
             PKR     +  +  D+ +  +           G++ R A      E L  +GLR S+ 
Sbjct: 127 AGPKRGRSLPKVLSIADVDRLLACARQEIDAAEGGARLRAARLNCLLEVLYATGLRVSEL 186

Query: 210 CRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKLLAM--------------TPIGKET 254
               +   + +    +   K      V L  G  + +A                P  K  
Sbjct: 187 VSLPLSAARRDARMIVVRGKGDKERLVPLNAGAKQAMARYLEEVAVATKETKGAPASKWL 246

Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATY 311
           F    +   +    F+   K  A +AG++    S H +R   A+     GA    +    
Sbjct: 247 FPSFGESGYLTRQHFARDLKDLAARAGLSPRLVSPHVLRHAFASHLLHNGADLRIVQTLL 306

Query: 312 GWKTVDQAETYTKGADRI 329
           G   +   + YT   +  
Sbjct: 307 GHSDISTTQIYTHVVEER 324


>gi|330999644|ref|ZP_08323353.1| site-specific recombinase, phage integrase family [Parasutterella
           excrementihominis YIT 11859]
 gi|329574150|gb|EGG55726.1| site-specific recombinase, phage integrase family [Parasutterella
           excrementihominis YIT 11859]
          Length = 358

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 59/314 (18%), Positives = 107/314 (34%), Gaps = 50/314 (15%)

Query: 55  TPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI 114
           + + E     R    TL  LI EY         +  +             K         
Sbjct: 42  SAELEISAEERSSSITLAALIDEYISEVTSQKRSKRTEEIRLRRLQ--RDKLAAKTLSSF 99

Query: 115 TTKHIRSGVESRKH----------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP 164
           T + I + +E R            +PS+  + LT +  +F++A++ E   +NPC  VE+P
Sbjct: 100 TNRTIENYIERRLSERAKNRDNYISPSTVNRELTILSDVFQFAIKNELTDVNPCRGVEKP 159

Query: 165 KRKTEGIRPWTKEDMQQFKSF--WSEGSQPR-------LAFEFLLYSGLRCSDSCRAGVQ 215
           +      R  + ED+++      W   + P+        AF F   +G+R  +  +    
Sbjct: 160 REPEHRERVASDEDIEKLLQASGWDGHTVPKNKMQLAVAAFLFSCQTGMRAGELLKIEYS 219

Query: 216 HLQNNIFSIKTQ--KTGTIITVELPDGFMKLLAMT--PIGKETFFINNDKQKMNATQFSI 271
            L +N+  +  +  KT +   V L     ++L +      +   F       +N      
Sbjct: 220 WLGDNVLHVPAEATKTLSRRDVALSARAREILKLVMELEYEPRIF-----GGLNDHNRDT 274

Query: 272 WFKAKATKAGV-------------NKSAHGVRKFSATISA----DAGA---TAHELMATY 311
            F+    +AG+               + H  R   AT +A    + GA       L    
Sbjct: 275 LFRKVRDRAGLGPEYDSQNRLIKEGLNFHDGRATFATWAASPDPETGAPRLDVLALARQT 334

Query: 312 GWKTVDQAETYTKG 325
           G K +   + Y + 
Sbjct: 335 GHKDLKMLQRYYRA 348


>gi|316931928|ref|YP_004106910.1| tyrosine recombinase XerD [Rhodopseudomonas palustris DX-1]
 gi|315599642|gb|ADU42177.1| tyrosine recombinase XerD [Rhodopseudomonas palustris DX-1]
          Length = 327

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 47/279 (16%), Positives = 94/279 (33%), Gaps = 31/279 (11%)

Query: 80  KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
            SA+              +  +     G  D   +  +   + ++ R    SS  + L++
Sbjct: 36  ASANTLDAYRRDLADLSHFLSRRRLSIGAADTAAL--RGYLADLDKRGFATSSVARRLSA 93

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS-------FWSEGSQP 192
           +R LF++ + +   A +P   +  PKR     +  +  D+ +  +            ++ 
Sbjct: 94  LRHLFRFLLSERIRADDPAAILAGPKRGRSLPKVLSIADVDRLLACARQEADAAEGAARL 153

Query: 193 RLA-----FEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKLLA 246
           R A      E L  +GLR S+     +   + +    +   K      V L  G  + +A
Sbjct: 154 RAARLNCLLEVLYATGLRVSELMALPLSAARRDARIIVVRGKGDKERLVPLNAGAKQAMA 213

Query: 247 M----------TPIGKETFFIN---NDKQKMNATQFSIWFKAKATKAGVN---KSAHGVR 290
                       P G  + ++     D   +    F+   K  A +AG++    S H +R
Sbjct: 214 RYLEEVAAVAKDPKGASSKWLFPSFGDSGHLTRQHFARDLKDLAARAGLSPRLVSPHVLR 273

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              A+     GA    +    G   +   + YT   +  
Sbjct: 274 HAFASHLLHNGADLRIVQTLLGHSDISTTQIYTHVVEER 312


>gi|294782183|ref|ZP_06747509.1| DNA integration/recombination/inversion protein [Fusobacterium sp.
           1_1_41FAA]
 gi|294480824|gb|EFG28599.1| DNA integration/recombination/inversion protein [Fusobacterium sp.
           1_1_41FAA]
          Length = 360

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 61/359 (16%), Positives = 127/359 (35%), Gaps = 38/359 (10%)

Query: 6   RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSA-----LTGSTPKREY 60
           R  P++ ++  R  +       G   R+ L           Y  A     L         
Sbjct: 17  RRKPWLLRDNKRFNEE-----TGKFERLALGVFETKKEAEIYRIAYFTNNLDMLKKTDIK 71

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
           I+  ++K  T + +   + K      +   +  ++E+ F +  +K    + ++I    ++
Sbjct: 72  IHKKKEKSITFEQVYKLWLKD---KDVNKGTLSNYETQFKR-SKKLHKMEMKEINGILLQ 127

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL-----SVERPKRKTEGIRPWT 175
               S   T S+     +   ++F +A+  +  + N        +VE+  + ++  R  T
Sbjct: 128 DIFYSLDLTNSTLRVLKSFWSMIFDFAILNDMCSKNYAKYLKTKTVEKGNKTSDRERVIT 187

Query: 176 KEDMQQFKSFWSEGSQPR----LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
           +E++Q      S     +         L Y+GLR S+  R   + +  N +  + +K+ +
Sbjct: 188 QEELQVLWDNISNNETNKHGIIDMVLILCYTGLRISELLRVKRKDVYLNEYYFEVEKSKS 247

Query: 232 II---TVELPDGFMKLLAMTPIGKETFF-INNDKQKMNATQFSIWFKAKATKAGVN-KSA 286
                 V + D  + L       K+TF     D  + +   F   F+      G++  S 
Sbjct: 248 KAGIRKVPIADKIVDLFRARYFSKDTFLWQRLDGLEYDYDSFDNHFRILFRDLGLSYHSL 307

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGIKNSRRISSVVD 344
           H  R   A++ ++  A    ++   G          Y           K  +R+  VVD
Sbjct: 308 HDTRHTFASLLSNNVADKDAIIKIIGHSNYKTTSDVYIH---------KEIKRLKKVVD 357


>gi|289523043|ref|ZP_06439897.1| integrase/recombinase XerD [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
 gi|289503586|gb|EFD24750.1| integrase/recombinase XerD [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
          Length = 299

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 39/265 (14%), Positives = 91/265 (34%), Gaps = 29/265 (10%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESRKHTPSSAIQFLTS 139
              + N+  ++ +   + I+   + +   I  +H         + S   + +S  ++  +
Sbjct: 23  RGYSENTIEAYMTDIAKWIKFCSNQNLDPIPPRHEYMSRFLKAMASEGKSKASLQRYAAA 82

Query: 140 MRVLFKWAVRQEYVAIN---PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QP 192
           +R   ++   + +V      P L    P ++ +  R  ++ ++++  S   +GS    + 
Sbjct: 83  IRSWNRYLTIEGWVDGEQWLPSL----PSKEQKLPRILSEGEIERLISSCRDGSVLGGRD 138

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELP----DGFMKLLAM 247
              FE     GLR S+ C   ++ +     +++   K      V L     +     +  
Sbjct: 139 EALFELAYGCGLRASEVCSLALEDIDWRAGTLRVIGKGDKERVVPLLGSVKEKLRHYVDA 198

Query: 248 TP-----IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISAD 299
                    +   F+    +K++        + +   AG+       H +R   AT    
Sbjct: 199 IRPLLNRREERWLFLTRTGRKLHREDLWRIIRRRGKAAGIPSVRLHPHVLRHSLATHMLR 258

Query: 300 AGATAHELMATYGWKTVDQAETYTK 324
            G     L    G  ++   E YT 
Sbjct: 259 RGLDLRTLQELLGHASISTTERYTH 283


>gi|225386262|ref|ZP_03756026.1| hypothetical protein CLOSTASPAR_00004 [Clostridium asparagiforme
           DSM 15981]
 gi|225047634|gb|EEG57880.1| hypothetical protein CLOSTASPAR_00004 [Clostridium asparagiforme
           DSM 15981]
          Length = 354

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 42/276 (15%), Positives = 88/276 (31%), Gaps = 28/276 (10%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES----------RKHTPSSAI 134
             L+  +  S+ S   +++ +       ++    I   +            +K+  S+  
Sbjct: 80  RDLSKETLTSYLSAVKRLMVEINGKSLDQMDETDIDWYLTQYEQRNVSSGGKKNEASTVN 139

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
                +   + W  + + +A NP  S+   K   + I  ++ E++ + +       + R 
Sbjct: 140 NERRFLSAFYTWMRKAKLIADNPVESIPAKKVPRKPIDYYSAEEIARIRDACK-NPRERA 198

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDG----FMKLLAMT 248
             E    +G R  +     +  L        I+ +K G   T+ L D     +   LA  
Sbjct: 199 IVEVFRSTGARVGEIAEITLDQLDLETGDIMIQGEKGGRYRTIYLDDDARYYYRMYLATR 258

Query: 249 PIGKETFFINNDK--QKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATA 304
                    ++ K   KM+   +    K    +AG+      H +RK       + G   
Sbjct: 259 KDDSPYLLPHSRKPYGKMSTDAYRSVMKTIGRRAGLMCRVYPHKMRKTLGMNLKNRGVDL 318

Query: 305 HELMATYGWKTVDQAETY-------TKGADRIRLGI 333
             +    G         Y       T  + R R+ +
Sbjct: 319 GIIQEVLGHANPAVTSQYYAQSTPKTLRSVRERMAV 354


>gi|284037946|ref|YP_003387876.1| integrase family protein [Spirosoma linguale DSM 74]
 gi|283817239|gb|ADB39077.1| integrase family protein [Spirosoma linguale DSM 74]
          Length = 390

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 33/254 (12%), Positives = 89/254 (35%), Gaps = 10/254 (3%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLF 144
           G+ +  +  +++     +IR +G     ++T    ++ +         +   +      +
Sbjct: 128 GNYSYRTLKNYKQALIALIRYAGSIPLDELTRAQYQAYLLFLTEKKRLSSATINVHINAY 187

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGL 204
           K+   +          ++ P++ T+    ++ ++++      +   + R  F  +  +GL
Sbjct: 188 KFYQEKVLQRDKLYFDIDYPRQPTKLPTVYSVDEVRAIIKATTS-LKYRTLFRLIYSTGL 246

Query: 205 RCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLLAMTP---IGKETFFINN 259
           R S++    +  L  +    +++  K      V L +     +             F + 
Sbjct: 247 RLSEAAHLHLVDLDRDRRLITVRAGKGKKDRVVMLSEKLDLDINTYLNQYRPHRYLFEDA 306

Query: 260 DKQ-KMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTV 316
             +  ++       +      AG+ K    H +R   AT   ++G     +    G +++
Sbjct: 307 STREPISIRTIQQVYSNTVRFAGIVKRGGIHSLRHSFATHLLESGVDIRHIQELLGHESI 366

Query: 317 DQAETYTK-GADRI 329
                YT   AD+I
Sbjct: 367 LTTMRYTHVTADKI 380


>gi|150016835|ref|YP_001309089.1| phage integrase family protein [Clostridium beijerinckii NCIMB
           8052]
 gi|149903300|gb|ABR34133.1| phage integrase family protein [Clostridium beijerinckii NCIMB
           8052]
          Length = 292

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 40/268 (14%), Positives = 94/268 (35%), Gaps = 20/268 (7%)

Query: 75  ISEYRKSAHWGSLAVNSRISF----ESYFDQI-IRKSGDFDYRKITTKHIRSGVESRKHT 129
           I+ Y+        + N+  ++      Y   +  +K   ++  K T       + ++  +
Sbjct: 5   INNYKNYLFESGKSENTIYAYVTDVSLYLKFLNRKKIDLYESDKSTVMSYIQNLTNQGKS 64

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KSF 185
             S  + + S+R  + +   +  +   P +  +  K   +  +  T E++ +     +  
Sbjct: 65  ERSINRIVISLRNFYSYLKSETLIKEVPKIEYKSSKNNRKLPQILTIEEVDKIIRIVEKD 124

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKL 244
            S+G +     E +  +G++ S+     V  +  ++  +K T        + +     K 
Sbjct: 125 CSKGIRDNALLELMYATGMKVSELIGLNVDDVNLDLNFVKCTDNKHYERLIPIGRSACKA 184

Query: 245 L--------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSA 294
           L         +   G    F+N +  K+         K  + KAG++K    +  R   A
Sbjct: 185 LTEYLSIRYKIAQCGVSNLFVNLNGNKLTRQGIWRIVKEYSRKAGIDKDVNLNTFRHSFA 244

Query: 295 TISADAGATAHELMATYGWKTVDQAETY 322
                 GA    +    G + +   +TY
Sbjct: 245 VHLLQNGANVRAVQKLLGNQVLTYMDTY 272


>gi|34762250|ref|ZP_00143256.1| DNA integration/recombination/invertion protein [Fusobacterium
           nucleatum subsp. vincentii ATCC 49256]
 gi|27888108|gb|EAA25168.1| DNA integration/recombination/invertion protein [Fusobacterium
           nucleatum subsp. vincentii ATCC 49256]
          Length = 360

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 57/346 (16%), Positives = 122/346 (35%), Gaps = 32/346 (9%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGS-----TPKREYINSPRKKPTTLKW 73
           G   Y   +   +R  +           Y  A+  +           I   ++K  T + 
Sbjct: 25  GPKYYSIEEKRYKRDFIACFKTQKEAETYKLAMFTNNIEMLENTDVKITKNKEKGITFEE 84

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           +   + KS     +   ++ ++E  F +  +  G  +  KI    +++   S   T S+ 
Sbjct: 85  IYQLWIKSKE--DVKDGTKTNYEINFKRSKKLCG-LEIAKINGIILQNIFYSLDLTNSTL 141

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERP-----KRKTEGIRPWTKEDMQQF----KS 184
               +    ++ +A+  +    N    ++ P     K+  +  RP T +++Q       +
Sbjct: 142 RLLRSFWSNIWDFAILNDMATKNYAKFLKLPVQEKGKKTGDRERPLTYDELQALWNNLYN 201

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII---TVELPDGF 241
           +  +  +       L Y+GLR  +  +   +++    F  + +K+ +      V + D  
Sbjct: 202 YEIDKYKIIDIILILCYTGLRIGELLKVNRKNIYLKDFYFEVEKSKSKAGVRKVPIADKI 261

Query: 242 MKLLAMTPIGKETFFINN-DKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISAD 299
           + L       K+TF     D  + +   F   F+      G++  S H  R   AT+ +D
Sbjct: 262 LDLFKNRYFSKDTFLWQRYDGLEYDYDSFDNHFRILFRDMGLSYHSLHDTRHTFATLLSD 321

Query: 300 AGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVVD 344
             A    ++   G  +     E Y           KN +++   VD
Sbjct: 322 NVADKDAVIKMIGHSSYKTTSEVYVH---------KNIKKLKEAVD 358


>gi|303246043|ref|ZP_07332324.1| integrase family protein [Desulfovibrio fructosovorans JJ]
 gi|302492439|gb|EFL52310.1| integrase family protein [Desulfovibrio fructosovorans JJ]
          Length = 380

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 49/293 (16%), Positives = 96/293 (32%), Gaps = 32/293 (10%)

Query: 53  GSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDY 111
            + P    +   +    TL  L  +Y               + E   D Q +   G+   
Sbjct: 76  ATVPPASQVIEKKPTGITLSELGKKYLDHMRASGRTEKHIRNVERLLDNQFVPVIGNKPV 135

Query: 112 RKITTK--------HIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV 161
             +T +        H +    S  ++ +  +  ++   +  +F + +   +  +NP  + 
Sbjct: 136 DSLTYQGDMVPFILHFKGVSGSTGKERSQYTVNKYCDYLSFIFNFGIDNGFTRVNPLKNW 195

Query: 162 ERPKRKTEGIRPW----TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD--SCRAGVQ 215
           ++PK +     PW    T +D ++           + A E     G R  +         
Sbjct: 196 KKPKVQ-----PWDLKLTLDDARKIMEHAEP--HLKWAMEVCFNLGTRPGESELLSLRWD 248

Query: 216 HLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINND-KQKMNATQFSIW 272
            +        I   KT T  TV +   F+K + +      + F+     + +        
Sbjct: 249 DVDFAAGTVRIYASKTKTYRTVPINPEFLKRMEIEKQESVSGFVIEYMGRGLT--TIRKS 306

Query: 273 FKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETY 322
           FK    +AG+      + +R   AT   + GA    +    G  TV   A+TY
Sbjct: 307 FKNACQRAGITYPTRMYDLRHLFATTLLNKGADLAAVSKMMGHSTVKLTADTY 359


>gi|118444090|ref|YP_878186.1| integrase/recombinase, putative [Clostridium novyi NT]
 gi|118134546|gb|ABK61590.1| integrase/recombinase, putative [Clostridium novyi NT]
          Length = 274

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 76/221 (34%), Gaps = 19/221 (8%)

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV--ERPKRKTEGIRPWTKEDMQ 180
           +  R     +  + L S+    K+         N  + +  E+ + +       + ED++
Sbjct: 59  IYDRGLKIKTINRKLVSINQFLKF--------NNITVDIRQEKVQMQNFLDDILSNEDVK 110

Query: 181 QF--KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
                ++  +  + R     L Y+G+R S+  +  +  ++    +I   K      V +P
Sbjct: 111 ALVNATYKKDDLRARAIIYTLYYTGMRVSEMLQLTIYDIKKQSITI-LGKGSKHREVFVP 169

Query: 239 DGFM---KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKF 292
           +      +      I K T      +  +N        K  A  AGVNKS   AH  R  
Sbjct: 170 NKLKDIWEAYMNVRIKKGTALFTGKRGPINRKTVDSLIKEYAALAGVNKSKAHAHNFRHL 229

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
                AD G     +    G + ++    YT+      L I
Sbjct: 230 YCKNLADKGIDISTIADIAGHQNINTTRIYTRKTKEELLDI 270


>gi|226946779|ref|YP_002801852.1| site-specific tyrosine recombinase XerC [Azotobacter vinelandii DJ]
 gi|259710429|sp|C1DJ58|XERC_AZOVD RecName: Full=Tyrosine recombinase xerC
 gi|226721706|gb|ACO80877.1| tyrosine recombinase XerC [Azotobacter vinelandii DJ]
          Length = 299

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 31/259 (11%), Positives = 82/259 (31%), Gaps = 19/259 (7%)

Query: 85  GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVES---RKHTPSSAIQFLT 138
             ++ ++   +     ++     + G   +  +    +R  +     + H+  S  + L+
Sbjct: 16  RQVSQHTLDGYRRDLAKVHAHCEREGLDAWSALDAGRLRRLIARLHLQGHSSRSLARLLS 75

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRL 194
           ++R  +++ +R+     +P   +  PK +    R    +  QQ      E      + + 
Sbjct: 76  ALRGFYRYLLREGRCRHDPAAGLSPPKGERRLPRTLDADRTQQLLDGAVEDDFIARRDQA 135

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII-TVELPDGFMKLLAM------ 247
             E    SGLR S+     +  L      ++    G     + +     + L        
Sbjct: 136 MLELFYSSGLRLSELVGLDLDRLDLAAGLVRVHGKGNKARDLPIGSKAREALRAWLSLRA 195

Query: 248 -TPIGKETFFINNDKQKMNATQFSIWFKAK-ATKAGVNKSAHGVRKFSATISADAGATAH 305
                    F+    +++      +  +     + G +   H +R   A+   ++     
Sbjct: 196 QARPADGALFVGRTGRRLTPRAVQLRVRQAGVRELGQHLHPHMLRHSFASHLLESSQDLR 255

Query: 306 ELMATYGWKTVDQAETYTK 324
            +    G   +   + YT 
Sbjct: 256 AVQELLGHADIATTQIYTH 274


>gi|91781471|ref|YP_556677.1| site-specific tyrosine recombinase XerC [Burkholderia xenovorans
           LB400]
 gi|91685425|gb|ABE28625.1| Putative integrase/recombinase [Burkholderia xenovorans LB400]
          Length = 307

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 42/279 (15%), Positives = 89/279 (31%), Gaps = 30/279 (10%)

Query: 75  ISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTP 130
           I+ Y  +  H   L+ ++   +    +++   +       ++   IR  V        T 
Sbjct: 7   IAAYLSNLEHERRLSAHTLRGYTHELEELKLLAKGRPLESLSAVDIRGAVSRAHAGGLTA 66

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFW 186
            S    L++ R  ++W   +  +  NP  +V  PK+     +  + +D    M+   +  
Sbjct: 67  RSISHRLSAWRAFYRWLAGRVDLPANPVATVRAPKQPKTLPKALSVDDATRLMESPPAAS 126

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRA------GVQHLQNNIFSI------KTQKTGTIIT 234
            EG +     E    SGLR ++             +       +         K      
Sbjct: 127 PEGLRDHAMLELFYSSGLRLAELVGLDARFADADGYRSAGWIKLDSAEVEVLGKGNRRRV 186

Query: 235 VELPDGFMKLLAMTPIGKE--------TFFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284
           V +    ++ LA     ++          F++    +++        K  A  AG+    
Sbjct: 187 VPVGSKALEALAAWLAVRDQMVKHDPHPLFLSARGNRLSPNVVRERVKRAALVAGIPANV 246

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
             H +R   AT    +      +    G  ++   + YT
Sbjct: 247 HPHVLRHSFATHVLQSSGDLRAVQELLGHASITATQVYT 285


>gi|15618932|ref|NP_225218.1| site-specific tyrosine recombinase XerD [Chlamydophila pneumoniae
           CWL029]
 gi|15836555|ref|NP_301079.1| site-specific tyrosine recombinase XerD [Chlamydophila pneumoniae
           J138]
 gi|16752001|ref|NP_445367.1| site-specific tyrosine recombinase XerD [Chlamydophila pneumoniae
           AR39]
 gi|34223088|sp|Q9Z6N5|XERD_CHLPN RecName: Full=Tyrosine recombinase xerD
 gi|4377356|gb|AAD19161.1| Integrase/recombinase [Chlamydophila pneumoniae CWL029]
 gi|7189741|gb|AAF38621.1| integrase/recombinase XerD [Chlamydophila pneumoniae AR39]
 gi|8979397|dbj|BAA99231.1| integrase/recombinase [Chlamydophila pneumoniae J138]
          Length = 301

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 41/258 (15%), Positives = 80/258 (31%), Gaps = 24/258 (9%)

Query: 89  VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAV 148
              R    S+   I   S   D  + +       +  RK   ++  + L +++V F +  
Sbjct: 32  AAYRQDISSFLT-ISAISSPQDISQNSVYIFAEELYRRKEAETTLARRLIALKVFFLFLK 90

Query: 149 RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS--------EGSQPRLAFEFLL 200
            Q+ +   P   +E PK         T +++    +              +       L 
Sbjct: 91  DQQLLPYPPI--IEHPKIWKRLPSVLTPQEVDALLAVPLQMEKNPRHLAFRDTAILHTLY 148

Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM-----------TP 249
            +G+R S+ C   + H+ ++   + T K      V L     + +               
Sbjct: 149 STGVRVSELCDLRLGHVSDDCIRV-TGKGSKTRLVPLGSRAREAIDAYLCPFRDQYQKKN 207

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATK-AGVNKSAHGVRKFSATISADAGATAHELM 308
             ++  F++    K+  +         A +      S H +R   AT   D  A    + 
Sbjct: 208 PHEDHLFLSTRGHKLERSCVWRRIHNYAKQVTSKPVSPHSLRHAFATHLLDNKADLRVIQ 267

Query: 309 ATYGWKTVDQAETYTKGA 326
              G   +   E YT  A
Sbjct: 268 EMLGHARIASTEVYTHVA 285


>gi|150388670|ref|YP_001318719.1| phage integrase family protein [Alkaliphilus metalliredigens QYMF]
 gi|149948532|gb|ABR47060.1| phage integrase family protein [Alkaliphilus metalliredigens QYMF]
          Length = 382

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 55/354 (15%), Positives = 112/354 (31%), Gaps = 47/354 (13%)

Query: 16  TRHGKIIYYFRKG----HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
            R     + +R       G R +           A+ +                    + 
Sbjct: 5   VRKRGNTWSYRIDLGIVDGSRKQKETGGFKKKSEAHSALRKAIDELENTGGVFEPTTISF 64

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
              ++ + ++     L  NS+ + +    + I    G++   +IT++ +++ + ++K   
Sbjct: 65  SDYLNYFIENYIEIHLRENSQRARQHIIKNHIRPAFGNYKIMQITSQALQNFI-TKKSKA 123

Query: 131 SSAIQFL---TSMRVLFKWAVRQEYVAINPCLSVERPKRKT----EGIRPWTKEDMQQFK 183
            S         ++   FK AV  E++ INP   V+ PKR      + I+  + E++ +  
Sbjct: 124 YSKNYISMIHATLSTAFKMAVEWEFIRINPMTRVKVPKRDDQEMDKEIKTLSPEEVNRCA 183

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-----GTIITVELP 238
               +G+   + F    ++GLR  +        +  +   +   K              P
Sbjct: 184 ERL-QGTHHYIPFMIAFHTGLRAGEVSALQWSDIDFDNQMLSVTKRLDYSASKENWEFKP 242

Query: 239 DGFMKLLAMTPIGKETFFINN------------DKQKMNATQFSIWFK---AKATKA--- 280
                      IG E   I                +      F   F+      TKA   
Sbjct: 243 PKTRSSNRTIAIGNELITILKSHSINQKKNKLKYGKHYTENDFICTFENGEVVITKAIGR 302

Query: 281 ---------GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
                     ++ + H +R   AT+  +AG     +    G  TV    +TY+ 
Sbjct: 303 VSEIIIRDVKIDFNFHMLRHTHATMLLEAGINPKVVQERLGHSTVSITLDTYSH 356


>gi|253575352|ref|ZP_04852690.1| phage integrase [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251845349|gb|EES73359.1| phage integrase [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 380

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 43/303 (14%), Positives = 98/303 (32%), Gaps = 42/303 (13%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-----------------FDYRK 113
           ++ L  +   +      ++ +  ++  +  + ++   D                      
Sbjct: 82  IQALDQKLLTTLKLKGYSLKTSKAYRGHVRRYLQNLADHLKMKSPGTLKDEKMTSAIIDS 141

Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE--RPKRKTEGI 171
             T+     +  + H+P+   Q ++++R L     +Q      P   ++  RP+++ +  
Sbjct: 142 SRTQQYALQLLEQGHSPAYVNQAISALRFLAVEVFKQ------PSEQMKYIRPQKEKKLP 195

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKT 229
              +++++ +         + R        SGLR S+  R  V  +     I  ++  K 
Sbjct: 196 YVLSEQEVLRVIQ-APTNLKHRTMLYLAYASGLRVSEVVRLKVTDIDPERGILRVRQGKG 254

Query: 230 GTIITVELP----DGFMKLLAMTPIGKETFFI--NNDKQKMNATQFSIWFKAKATKAGVN 283
                  L     D   K +    +    +     +    ++       F+     +G+ 
Sbjct: 255 KKDRHTLLSQTAWDMIQKYVEAERLSNSMWLFPGQHSGSHLHERSLQKVFQEALQTSGIR 314

Query: 284 KS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
           K    H +R   AT   + G     +    G       E YT       +  KN +RI S
Sbjct: 315 KQVGIHVLRHSFATHLLENGTDLRYIQELLGHANPSTTERYTH------VSTKNLKRIKS 368

Query: 342 VVD 344
            +D
Sbjct: 369 PLD 371


>gi|330963829|gb|EGH64089.1| site-specific recombinase, phage integrase family protein
           [Pseudomonas syringae pv. actinidiae str. M302091]
          Length = 355

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 53/290 (18%), Positives = 108/290 (37%), Gaps = 27/290 (9%)

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119
           YI     +  TL+  +  Y  S    +    ++ +  +   Q+I   G +    ++ + I
Sbjct: 50  YIQRSGSERMTLEMALKRYL-SEISPTKKPTTQRAEATKAQQLISHLGKYSMAALSAEII 108

Query: 120 RSGVESR------KHTPSSAIQF---LTSMRVLFKWAVRQEY---VAINPCLSVERPKRK 167
               ++R      +  P+S       L  +  LF  A+ QE+   ++ NP L++ +P   
Sbjct: 109 AGYRDTRLASITNRGKPTSNNTVRLELALLSHLFTVAI-QEWGLGLSFNPVLNIRKPSTG 167

Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNN--IFS 223
               R  + E+ ++  +  +  S P L       L +G+R S+        +     +  
Sbjct: 168 EGRDRRLSAEEERRLLTAVNNHSNPMLGWIVRIALETGMRSSEITSLRRHQVDMKKRVVR 227

Query: 224 IKTQKTGTIITVELPDGFMKLLAMT------PIGKETFFINNDKQ--KMNATQFSIWFKA 275
           +   K  +  TV L     +           PI  +  F     +  K +   F+  +  
Sbjct: 228 LSDTKNDSARTVPLSKWATETFQAALNNPIRPIDCDLVFFGEPGKNGKRSPYAFTKTWGL 287

Query: 276 KATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             TK G+ +   H +R  + +   + G +  E+ A  G K++   + YT 
Sbjct: 288 LKTKLGMPDLRFHDLRHEAVSRLVEGGLSDQEVSAISGHKSMQMLKRYTH 337


>gi|220918789|ref|YP_002494093.1| integrase family protein [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219956643|gb|ACL67027.1| integrase family protein [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 392

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 53/301 (17%), Positives = 96/301 (31%), Gaps = 25/301 (8%)

Query: 45  PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QII 103
            A  + L G     E          TL     ++ + A       ++  + ES     ++
Sbjct: 68  EAIHAKLNGKGAANEARVP------TLAEFEKQFIEHARANRQKASTVYAKESILRVHLV 121

Query: 104 RKSGDFDYRKITTKHIRSGVESRK-HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162
              G     +IT   +++   +   H P +    L ++  L + A R   +   P  S E
Sbjct: 122 PVLGTKRLDEITEADVQALKVTLAEHRPKTVNNVLATLSKLLRVAKRLGVIDAVPVESFE 181

Query: 163 RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS--GLRCSDSCRAGVQHLQNN 220
             K     +  +T E+     +  +    PR+    LL    GLR  +     +  ++  
Sbjct: 182 LVKAPLAAVPFYTFEEYAVLVA-AARRLDPRILAAVLLGGNAGLRAGEVVALELPDVRRA 240

Query: 221 IFSIKTQ-----------KTGTIITVELPDGFMKLLAMT-PIGKETFFINNDKQKMNATQ 268
              I  +           K G    V + D     LA    +      + +D   + A  
Sbjct: 241 NARITIERQAWRGVVDTPKGGKGRVVPMTDALKAALAAVRHLRGARVLVQDDGSDLTAKV 300

Query: 269 FSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
              W K+    AG+    + H +R    +  A  GA A  +    G   +     Y   A
Sbjct: 301 LRGWMKSAQRLAGLRPTGNFHILRHTFCSHLAMRGAPAKVIQELAGHTHLSTTMRYMHLA 360

Query: 327 D 327
           +
Sbjct: 361 E 361


>gi|91781187|ref|YP_556394.1| putative phage integrase [Burkholderia xenovorans LB400]
 gi|121582724|ref|YP_973166.1| phage integrase family protein [Polaromonas naphthalenivorans CJ2]
 gi|91693847|gb|ABE37044.1| putative phage integrase [Burkholderia xenovorans LB400]
 gi|120595986|gb|ABM39424.1| phage integrase family protein [Polaromonas naphthalenivorans CJ2]
          Length = 400

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 55/297 (18%), Positives = 100/297 (33%), Gaps = 19/297 (6%)

Query: 48  MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKS 106
             A            +  +K  T+K L   +           +++  ++   D+ II   
Sbjct: 77  WLAEVRRGGDPGGDKAEARKAPTVKELCGRFMSDYSKVRNKPSTQKGYQGNIDRNIIPIL 136

Query: 107 GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA--INPCLSVERP 164
           G    + +    + + ++  + TP  A   L  MR +F  A          NPC  + + 
Sbjct: 137 GRMKVQDVKRPDVATMMKKLESTPMEANHTLAVMRKMFNMAEIWGLRTDGTNPCRHIPQ- 195

Query: 165 KRKTEGIRPWTKEDM-------QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217
             + +  R  T E+M        + ++  SE     LA         R S+        +
Sbjct: 196 YPQGKTTRLITDEEMGKLFRHLDKVEAESSEPPIVTLAIRLQFEFAARRSEILLLEWTWV 255

Query: 218 Q--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFF----INNDKQKMNATQFSI 271
              N   +    KTG +    + +   +LL+  P  + + +    + +  + M   +   
Sbjct: 256 DLENRRVAWPDSKTGGMSK-PMSEEAHRLLSTVPRHEGSLYVLPSLRDPLKHMTNGEHYN 314

Query: 272 WFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
            +      AGV     HG+R  SAT  A++G      M     KTV     Y    D
Sbjct: 315 GWSRILKAAGVQHVGTHGIRHRSATDIANSGIPVKVGMVLTAHKTVAMFMRYIHTED 371


>gi|266620141|ref|ZP_06113076.1| tyrosine recombinase XerD [Clostridium hathewayi DSM 13479]
 gi|288868265|gb|EFD00564.1| tyrosine recombinase XerD [Clostridium hathewayi DSM 13479]
          Length = 323

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 39/286 (13%), Positives = 90/286 (31%), Gaps = 45/286 (15%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHTPSSAIQFLTSM 140
            +L+  +  +++S    +     +  Y  I    I         ++K +P S  +   S+
Sbjct: 23  RNLSGKTIYAYKSDLLCMFTWLNENKYESINPHSISDYFLYLQNNKKLSPRSIRRKYVSI 82

Query: 141 RVLFKWAVRQEYVAINPCLSV---------ERPKRKTEGIRPWTKEDMQQFKSFWSEG-- 189
           +  F +        IN    V          + +      R  +K ++ Q  +  S+   
Sbjct: 83  KQFFHY--------INVEKGVNEIFMKFSSRKFQLPKSLPRTLSKMEVNQLIATVSKEYK 134

Query: 190 -----------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------ 232
                       +     E L   GLR  +     ++   +   S      G        
Sbjct: 135 SASTDFYRRLCLRDMCIIEILFCLGLRIGEVAALNIEDYDSGEASFLIHGKGNKERMLFI 194

Query: 233 ITVELPDGFMKLLAMTP---IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAH 287
            ++ +     K +       +  +  F+N   ++++       F      A +N   + H
Sbjct: 195 SSITVNQKLQKWIRTRQEFNLQDDALFVNKYGKRLSIYSIENLFYKYRELAHINSEATPH 254

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
            +R   AT   + GA    +    G  ++   + YT+ + + +  +
Sbjct: 255 YLRHSFATQLLNNGADIRAVQDILGHSSIVTTQIYTEVSLKRKKEV 300


>gi|254460911|ref|ZP_05074327.1| tyrosine recombinase XerC [Rhodobacterales bacterium HTCC2083]
 gi|206677500|gb|EDZ41987.1| tyrosine recombinase XerC [Rhodobacteraceae bacterium HTCC2083]
          Length = 306

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 42/271 (15%), Positives = 84/271 (30%), Gaps = 28/271 (10%)

Query: 88  AVNSRISFESYFDQII--------RKSGDFDYRKITTKHIRSGVESRKH---TPSSAIQF 136
           + N+  ++ +     I           G     +ITT+ +R+ +   +    +  S  + 
Sbjct: 26  SENTIKAYSADTADFIGFMTSYKSEPQGLAALARITTRDMRAWMAQTRGDEVSARSLARK 85

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK-------SFWSEG 189
           L+S++  ++W   +E       L++  PK + +  RP   E  +          +     
Sbjct: 86  LSSVKSFYRWLAEREGFEPTAVLTIRAPKFQKKLPRPLAVEAAKAMIETVEYQTAHTWVA 145

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM-- 247
           ++       L   GLR S++       +          K G    V +     + +    
Sbjct: 146 ARDSAVLTLLYGCGLRISEALGLTGADVPLPTALRILGKGGKERVVPVLPAAREAVQAYL 205

Query: 248 -----TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADA 300
                        F       +N             + G+  +A  H +R   AT    A
Sbjct: 206 NICPYPLEPNAPLFRGIRGGALNPRAVQSVMAKARMQLGLPATATPHAMRHSFATHLLSA 265

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRL 331
           G     +    G  ++   + YT   D  RL
Sbjct: 266 GGDLRSIQELLGHSSLSTTQAYT-AVDTARL 295


>gi|149278899|ref|ZP_01885034.1| integrase [Pedobacter sp. BAL39]
 gi|149230518|gb|EDM35902.1| integrase [Pedobacter sp. BAL39]
          Length = 294

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 47/271 (17%), Positives = 86/271 (31%), Gaps = 26/271 (9%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDF------DYRKITTKHIRSGVESRKHTPS 131
           Y K  H    + ++  S+E+   Q      D       D  +   +     +  R+    
Sbjct: 9   YLK--HEKRYSPHTIQSYETDLLQFEAYLSDVYELALPDAGRAQVRDYMVWLMERQIAER 66

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS- 190
           S  + L+++R  +K  V    +A +P   V  PK             + Q        + 
Sbjct: 67  SVARKLSALRSFYKHLVAGGAIASSPMALVRAPKVPNRLPVFVEDHKLDQLLDSTEIFND 126

Query: 191 -----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKL 244
                + +L  E L  +G+R S+     +Q +     S+K   K      + +      L
Sbjct: 127 SFSSVRDKLVIEMLFGTGMRVSELVNVKLQDVDFYASSVKVLGKRNKERIIPIGKTLTSL 186

Query: 245 LAMTPIGK---------ETFFINNDKQKMNATQFSIWFKAKA--TKAGVNKSAHGVRKFS 293
           L +    K         E  F+ N    +          +          KS H +R   
Sbjct: 187 LKVYIDTKTLQDFNNKTEYLFVTNKGAAVTRGFIYKIVTSYLTYVSTQDKKSPHVLRHSY 246

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324
           AT   + GA  + +    G  ++   + YT 
Sbjct: 247 ATSLLNRGADLNAIKELLGHASLAATQVYTH 277


>gi|254294584|ref|YP_003060607.1| integrase family protein [Hirschia baltica ATCC 49814]
 gi|254043115|gb|ACT59910.1| integrase family protein [Hirschia baltica ATCC 49814]
          Length = 318

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 44/296 (14%), Positives = 98/296 (33%), Gaps = 32/296 (10%)

Query: 66  KKPTTLKWLISEYRKSA-HWGSLAVNSRISFES--------YFDQIIRKSGDFDYRKITT 116
             P T    +  + +   H   ++ ++   +            + +  ++   D   +T 
Sbjct: 14  HAPNTASQALYAFVEHLTHERRMSEHTIDGYRRDVGNFLGFLVNHLGGEAHVNDLVNLTP 73

Query: 117 KHIRSGVESRKHT----PSSAIQFLTSMRVLFKWAVRQEYVAINP-CLSVERPKRKTEGI 171
             +R+ +  R+       +S  + L+++R  FK+ + ++    N     V+ PKR     
Sbjct: 74  SDVRAWLAFRRANDDLQATSISRALSAVRAFFKY-LDRQLDKPNARIQMVKAPKRPQRLP 132

Query: 172 RPWTKE-------DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
           RP ++E       +++         ++       +  +GLR S++       +       
Sbjct: 133 RPVSQEIAKNLLKEVENQDVEPWIAARDAAMVALMYGAGLRISEALSLTDADVPARDILR 192

Query: 225 KTQKTGTIITVELPDGFMKLLAM-------TPIGKETFFINNDKQKMNATQFSIWFKAKA 277
              K   +  V L       L +           +   F     +K+N        +   
Sbjct: 193 IQGKGNKVRLVPLIPAVRDALNVYYEKRPFLSDEEGPLFRGVKGKKLNPRIIQKLIEKLR 252

Query: 278 TKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330
              G+    + H +R   AT     GA    +    G  ++   + YT   ADR++
Sbjct: 253 ISMGLPDTATPHALRHSFATHLLANGADLRSIQTLLGHASLSSTQIYTGVEADRLK 308


>gi|226307996|ref|YP_002767956.1| integrase [Rhodococcus erythropolis PR4]
 gi|226187113|dbj|BAH35217.1| putative integrase [Rhodococcus erythropolis PR4]
          Length = 374

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 51/280 (18%), Positives = 94/280 (33%), Gaps = 35/280 (12%)

Query: 88  AVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKW 146
              +R     Y D+ I+    + +   +  + +R+   S    P+      + +R +   
Sbjct: 96  KPRTRDLNRGYLDRVILPTFANLELEGLNVQMVRTWFASLDARPTRNANAYSLLRTILNQ 155

Query: 147 AVRQEYVAINPCLSVER--PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGL 204
           A+  E + +NPC  ++R   K +       +  +++   +  S   + R       +SGL
Sbjct: 156 ALDDELIQVNPCR-IKRAAVKVRVVEPIALSAGEVRALSAAMSI-ERWRALVLVAGFSGL 213

Query: 205 RCSDSCRAGVQHL-----------------QNNIFSIKTQKTGTII-TVELPDGFMKLL- 245
           R  +        +                 +   F I   K+   + TV LP    + L 
Sbjct: 214 RWGELAALRRSDVVLTDSECSVTVARAVVRRTGEFVIGRPKSHAALRTVPLPSALREALE 273

Query: 246 -----AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATIS 297
                   P      F +      +        K  A  A +       H +R  +AT+ 
Sbjct: 274 DHLELYALPGRNGLVFPSVGGTVAHENVVRPHLKKAA--AKIGHQSFRFHDLRHTAATMF 331

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKG-ADRIRLGIKNS 336
           A AGAT  + M   G  +   +  YT   A R R  ++N 
Sbjct: 332 AQAGATLADHMTLMGHTSAAMSARYTHSTASRNRELVENM 371


>gi|294778653|ref|ZP_06744075.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
 gi|294447602|gb|EFG16180.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
          Length = 430

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 49/284 (17%), Positives = 99/284 (34%), Gaps = 29/284 (10%)

Query: 78  YRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVESRKHTPSSA 133
           + KSA        +++ +  S    +       D++ +T    +     +  + +  ++ 
Sbjct: 135 FAKSAIDNSDKKQSTKDNLHSTLAVLHDFRSGLDFKDLTYTFLRDFEQYLREKGNAVNTI 194

Query: 134 IQFLTSMRVLFKWAVRQEYVAIN--PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
            + +  +R L   A+ Q Y+  +  P    +  K++       T +++++ ++   E   
Sbjct: 195 AKHMRQLRTLVNEAINQGYMHADAYPFRKYK-IKQEKGRHEFLTPDELKKLETVKVEEES 253

Query: 192 PR---LAFEFLLYSGLRCSDSCRAGVQHLQN----NIFSIKTQKTGTIITVELPDGFMKL 244
            R    AF F  Y+GLR SD C+   ++            K+ KTG  I + L    +  
Sbjct: 254 MRHVLDAFLFCCYTGLRYSDFCQLTPENFIRINGKRWLYFKSVKTGVEIRLPLH--LLFE 311

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGA 302
                I      I +       ++ +   +  A   G+ K    H  R   AT+    G 
Sbjct: 312 SRALGILDRYPDIGSFAALPCNSEVNKQLRKLAELCGIKKRITYHVSRHTCATLLVHQGV 371

Query: 303 TAHELMATYGWKTVDQAETYT-----------KGADRIRLGIKN 335
               +    G  +V   + Y+           K   R R  +K 
Sbjct: 372 AITTVQKLLGHTSVKTTQIYSEVLSSTIVRDLKNVQRKRKKVKM 415


>gi|239621228|ref|ZP_04664259.1| site-specific tyrosine recombinase XerC [Bifidobacterium longum
           subsp. infantis CCUG 52486]
 gi|239515689|gb|EEQ55556.1| site-specific tyrosine recombinase XerC [Bifidobacterium longum
           subsp. infantis CCUG 52486]
          Length = 357

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 49/329 (14%), Positives = 91/329 (27%), Gaps = 82/329 (24%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGV--ESRKHTP 130
             Y KS     L+ N+  ++ +       +    G  D  +IT   +RS +  ESR H  
Sbjct: 14  VSYLKSNR--GLSANTLKAYRADLTACLHLFELRGVTDLNEITLDDLRSWMAVESRDHAR 71

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK------- 183
           SS  +   ++R  F WA        +P  ++  P   +      T+   +Q         
Sbjct: 72  SSMARKTVAVRGFFAWAYEHGVTNTDPAATLMTPSIPSTLPAVLTESQAEQLLDVAEQAV 131

Query: 184 ----------------------------------------SFWSEGSQPRLAFE------ 197
                                                   +   +    R+  E      
Sbjct: 132 ATNQYKGDGGAAAASGSGSGKAVGKTADKSADTVNRNEAPARADKRDSARVVAESQRNAA 191

Query: 198 ---FLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPD------------- 239
               L  +G+R ++     +  +   N    +  +     +                   
Sbjct: 192 ILELLYATGIRVAELVSMDIVDVDFSNRTIKVTGKGNKQRVVPFGLPAQRALETWLEQGR 251

Query: 240 ---GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSAT 295
                    A         F+     +++           A +AGV + S H +R  +AT
Sbjct: 252 PVLARTATDAAKSRAANALFLGARGGRIDQRIARDIVHRAAREAGVPDISPHALRHSAAT 311

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTK 324
              D GA   E+    G  ++   + YT 
Sbjct: 312 HMLDGGADLREVQEMLGHSSLKTTQRYTH 340


>gi|329314712|gb|AEB89125.1| Integrase [Staphylococcus aureus subsp. aureus T0131]
          Length = 390

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 63/385 (16%), Positives = 129/385 (33%), Gaps = 62/385 (16%)

Query: 17  RHGKIIYYFRK---GHGRRIRLPYPHESTF----IPAYMSALTGSTPKREYINSPRKKPT 69
           + G   + +R          +  Y   S F       + + +     +     +P    +
Sbjct: 6   KRGNT-WRYRISLGKDAETGKYKYISNSGFKRKSDAKHHAEMVERQLRNGDYIAP--STS 62

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           T K +  ++  S +   + V+S  + E   +  I +  +   + I     +  V      
Sbjct: 63  TFKQVADDWI-SQYANEVKVSSVRAREKAINHAIERFNNKPIQTINKHEYQRFVNDISAQ 121

Query: 130 PSSA--IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK--------TEGIRP-WTKED 178
            S       + S  ++FK+A   + + I P   ++RPK+K        TE  +    K++
Sbjct: 122 YSKNYVDSIIASTNMIFKYAYDMKLIRIMPSEGIKRPKKKISVEELEDTEIHKKFLEKDE 181

Query: 179 MQQFKSFWSEGSQPRLAFEF---LLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ------ 227
           + QF         P+ +FE    L Y+G+R  +        +   NN  +I         
Sbjct: 182 LFQFLEVAKNHHSPQNSFELFCTLAYTGMRAGELLALKWSDIDFENNTINITKTYYNPNN 241

Query: 228 ----------KTGTII-TVELPDGFMKLLAMTP------------IGKETFFINNDKQKM 264
                     KT + I  + +    +KLL                +     F + +   +
Sbjct: 242 NKKQFQILTPKTESSIGKISVDPHVIKLLKNYKVDVQDTWKNELYVDNNFVFTDVNGYPL 301

Query: 265 NATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE- 320
              +  +W KA   K  +     S H  R     +  +AG    E+      K ++    
Sbjct: 302 VIKKLQLWIKAILKKTDITNKQISTHSFRHTHCALLIEAGVHIKEIQERLRHKDINTTMN 361

Query: 321 TYTKGADRIRLGIKNSRRISSVVDS 345
            Y K  +  +     S++ S ++++
Sbjct: 362 IYAKITNSYKK--DASQKFSKLMEN 384


>gi|237729900|ref|ZP_04560381.1| phage integrase [Citrobacter sp. 30_2]
 gi|226908506|gb|EEH94424.1| phage integrase [Citrobacter sp. 30_2]
          Length = 398

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 60/285 (21%), Positives = 111/285 (38%), Gaps = 14/285 (4%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNS-RISFESYFDQIIRKSGDF 109
           +   T  R   +  R  P TL+   S+Y     W  L   S     + + D I    G+ 
Sbjct: 89  IATGTDPRYERDKCRAIP-TLQEAFSQYY--FPWAKLHKKSWNKDEQRFRDHIAPVMGNL 145

Query: 110 DYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167
              +IT +H+     S   T  P++  + +  ++ L +W++R E VA NP  +    +  
Sbjct: 146 LLNEITPRHVTHLQSSLCETCQPATNNRVIALLKALLRWSLRHEMVATNPAANTPLLREN 205

Query: 168 TEGIRPWTKEDMQQ-FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRA-GVQH--LQNNIFS 223
               R +++ ++++ F++   + S+    +  LL       D  R     H  LQ     
Sbjct: 206 NARQRYFSETEIRRIFEAASEDNSRVASIYIRLLLLTGLRRDELRLAKWAHYSLQQGTLW 265

Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK-QKMNATQFSIWFKAKATKAGV 282
           +   K GT   V L D  +KL+A  P      ++   K         +  F+    +AG+
Sbjct: 266 LPETKNGTGRLVHLNDWAIKLIAELPRFGGNIWMFGGKIPGKPVCNVTKAFRRIIRRAGI 325

Query: 283 ---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
                  H  R   A +    G T +++ A  G +++  ++ Y  
Sbjct: 326 YDDEVCIHTCRHSVAALIVSRGGTLYDVQAQLGHRSIQSSQRYAH 370


>gi|166710518|ref|ZP_02241725.1| site-specific tyrosine recombinase XerC [Xanthomonas oryzae pv.
           oryzicola BLS256]
          Length = 345

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 39/267 (14%), Positives = 89/267 (33%), Gaps = 27/267 (10%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDF-------------DYRKITTKHIRSGV---ESRKH 128
             ++ ++  ++      ++  +G+              D  ++ + H+R  V     R  
Sbjct: 55  RQVSAHTLDAYRRDLAALVAWTGERNTEDGAQQTATPVDSAQLDSAHLRQFVAAEHRRGL 114

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF--- 185
           +P S  + L++ R  + W ++   +A +P  ++  PK   +  +    ++  +       
Sbjct: 115 SPKSLQRRLSACRSYYAWLLKHGRIAASPAAALRAPKAPRKLPQVLDADEAVRLVEVPTD 174

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKL 244
              G + R   E    SGLR S+ C    + L  ++   +   K      V +    +  
Sbjct: 175 APLGLRDRALLELFYSSGLRLSELCALRWRDLDLDSGLVMVLGKGSKQRLVPVGSHAIAA 234

Query: 245 LAM-----TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS 297
           L               F       ++     I  K  A + G+  +   H +R   A+  
Sbjct: 235 LRQWRRDSGASADAHVFPGRAGGAISQRAVQIRIKQLAVRQGMFKDVHPHMLRHSFASHI 294

Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324
            ++      +    G   +   + YT 
Sbjct: 295 LESSGDLRGVQELLGHSDIATTQIYTH 321


>gi|138563|sp|P25426|VINT_BPMFR RecName: Full=Integrase
 gi|15091|emb|CAA45229.1| integrase [Mycobacterium phage FRAT1]
          Length = 333

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 50/299 (16%), Positives = 102/299 (34%), Gaps = 40/299 (13%)

Query: 53  GSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDY 111
               K+   ++   +  T KW+            LA  ++  + ++   +I    GD   
Sbjct: 23  AEREKKAAASAITVEEYTKKWIAER--------DLAGGTKDLYSTHARKRIYPVLGDTPV 74

Query: 112 RKITTKHIRSGVESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170
            ++T   +R+      K  P++       +R +   AV  + V+ NPC  +E+       
Sbjct: 75  AEMTPALVRAWWAGMGKQYPTARRHAYNVLRAVMNTAVEDKLVSENPCR-IEQKAPAERD 133

Query: 171 IRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQK 228
           +   T E++             R+A   L ++ LR  +      + + ++     ++ ++
Sbjct: 134 VEALTPEELDVVAG--EVFEHYRVAVYILAWTSLRFGELIEIRRKDIMDDGETMKLRVRR 191

Query: 229 TGTII----------------TVELPDGFMKLLAM--------TPIGKETFFINNDKQKM 264
               +                 V +P     ++              +         Q++
Sbjct: 192 GPARVGEKIVVGNTKTVRSKRPVTVPPHVAAMIRAHMADRTKMNKGPEALLVTTTRGQRL 251

Query: 265 NATQFSIWFKA-KATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           + + F+   K   A     +   H +R   AT++A AGAT  ELM   G  T   A  Y
Sbjct: 252 SKSAFTRSLKKGYAKIGRPDLRIHDLRAVGATLAAQAGATTKELMVRLGHTTPRMAMKY 310


>gi|33242394|ref|NP_877335.1| site-specific tyrosine recombinase XerD [Chlamydophila pneumoniae
           TW-183]
 gi|33236905|gb|AAP98992.1| tyrosine recombinase [Chlamydophila pneumoniae TW-183]
 gi|269302825|gb|ACZ32925.1| tyrosine recombinase XerD [Chlamydophila pneumoniae LPCoLN]
          Length = 299

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 41/258 (15%), Positives = 80/258 (31%), Gaps = 24/258 (9%)

Query: 89  VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAV 148
              R    S+   I   S   D  + +       +  RK   ++  + L +++V F +  
Sbjct: 30  AAYRQDISSFLT-ISAISSPQDISQNSVYIFAEELYRRKEAETTLARRLIALKVFFLFLK 88

Query: 149 RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS--------EGSQPRLAFEFLL 200
            Q+ +   P   +E PK         T +++    +              +       L 
Sbjct: 89  DQQLLPYPPI--IEHPKIWKRLPSVLTPQEVDALLAVPLQMEKNPRHLAFRDTAILHTLY 146

Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM-----------TP 249
            +G+R S+ C   + H+ ++   + T K      V L     + +               
Sbjct: 147 STGVRVSELCDLRLGHVSDDCIRV-TGKGSKTRLVPLGSRAREAIDAYLCPFRDQYQKKN 205

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATK-AGVNKSAHGVRKFSATISADAGATAHELM 308
             ++  F++    K+  +         A +      S H +R   AT   D  A    + 
Sbjct: 206 PHEDHLFLSTRGHKLERSCVWRRIHNYAKQVTSKPVSPHSLRHAFATHLLDNKADLRVIQ 265

Query: 309 ATYGWKTVDQAETYTKGA 326
              G   +   E YT  A
Sbjct: 266 EMLGHARIASTEVYTHVA 283


>gi|23465946|ref|NP_696549.1| site-specific tyrosine recombinase XerC [Bifidobacterium longum
           NCC2705]
 gi|312132551|ref|YP_003999890.1| integrase/recombinase-like protein [Bifidobacterium longum subsp.
           longum BBMN68]
 gi|23326657|gb|AAN25185.1| probable integrase/recombinase protein similar to RV2894C
           [Bifidobacterium longum NCC2705]
 gi|311773487|gb|ADQ02975.1| Integrase/recombinase-like protein [Bifidobacterium longum subsp.
           longum BBMN68]
          Length = 357

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 49/329 (14%), Positives = 91/329 (27%), Gaps = 82/329 (24%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGV--ESRKHTP 130
             Y KS     L+ N+  ++ +       +    G  D  +IT   +RS +  ESR H  
Sbjct: 14  VSYLKSNR--GLSANTLKAYRADLTACLHLFELRGVTDLNEITLDDLRSWMAVESRDHAR 71

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK------- 183
           SS  +   ++R  F WA        +P  ++  P   +      T+   +Q         
Sbjct: 72  SSMARKTVAVRGFFAWAYEHGVTNTDPAATLMTPSIPSTLPAVLTESQAEQLLDVAEQAV 131

Query: 184 ----------------------------------------SFWSEGSQPRLAFE------ 197
                                                   +   +    R+  E      
Sbjct: 132 ATNQYKGDGGAAAASGSGSGKAVGKTADKSADTVNRNEAPARADKRDSARVVAESQRNAA 191

Query: 198 ---FLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPD------------- 239
               L  +G+R ++     +  +   N    +  +     +                   
Sbjct: 192 ILELLYATGIRVAELVSMDIVDVDFSNRTIKVTGKGNKQRVVPFGLPAQRALETWLEQGR 251

Query: 240 ---GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSAT 295
                    A         F+     +++           A +AGV + S H +R  +AT
Sbjct: 252 PVLARTATDAAKSRATNALFLGARGGRIDQRIARDIVHRAAREAGVPDISPHALRHSAAT 311

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTK 324
              D GA   E+    G  ++   + YT 
Sbjct: 312 HMLDGGADLREVQEMLGHSSLKTTQRYTH 340


>gi|313682300|ref|YP_004060038.1| tyrosine recombinase xerd subunit [Sulfuricurvum kujiense DSM
           16994]
 gi|313155160|gb|ADR33838.1| tyrosine recombinase XerD subunit [Sulfuricurvum kujiense DSM
           16994]
          Length = 273

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 35/253 (13%), Positives = 80/253 (31%), Gaps = 19/253 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLF 144
            +L+  +  ++     +I  ++       I +  +   + +  +   +  + L++     
Sbjct: 16  KALSPRTIEAYSRDLGEI-EQNAQKALVDIDSNTVFQILGTLSNK-RTLNRKLSAFNSFL 73

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ----FKSFWSEGSQPRLAFEFLL 200
            +  R  + ++         K      +  T E +Q            G +      FL 
Sbjct: 74  DFCHRNRFDSL--STKFSLSKVPKNLPKYVTYETIQAGLGMIDRSDWIGLRDYALILFLY 131

Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL----PDGFMKLLAMTPIGKETFF 256
            +G R S++  A    ++     I+  K      V +              +P  K   +
Sbjct: 132 ATGSRISEALIAEEGDIEIEWLRIRHGKGEKERYVPIAHEALKALRAYQEASPYNKPYLW 191

Query: 257 INNDKQKMNA-TQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKT 315
           +N   + ++  + F I  K       +  S H +R   AT     GA    +    G  +
Sbjct: 192 LNYRGEPLSRISAFKITQKY------LGVSPHALRHSYATALILGGADLRVVQELLGHAS 245

Query: 316 VDQAETYTKGADR 328
           +   + YT    +
Sbjct: 246 LLTTQIYTHVQKQ 258


>gi|167813643|ref|ZP_02445323.1| prophage integrase [Burkholderia pseudomallei 91]
 gi|254188210|ref|ZP_04894722.1| prophage integrase [Burkholderia pseudomallei Pasteur 52237]
 gi|157935890|gb|EDO91560.1| prophage integrase [Burkholderia pseudomallei Pasteur 52237]
          Length = 376

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 43/320 (13%), Positives = 100/320 (31%), Gaps = 23/320 (7%)

Query: 18  HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISE 77
                ++     G RIR             ++A   S   R+     R    T    +  
Sbjct: 8   KNGPWWFDLSIDGSRIRQSSGTSDRRAAEELAAKVASDYWRQKKLGERPA-VTWDAAVVH 66

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--------T 129
           + K     +    S  + +     +  +    + R I  + I++ +E++           
Sbjct: 67  WLK----QNQHQRSLETTKQRLRWLTDQLKGENVRNIDRERIQALIETKAAEKYRGSPVA 122

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            ++  + + ++ V+      + ++   P   + + +  +  +   T+   Q+        
Sbjct: 123 GATVNRHMAALSVILHHCHAEGWIDAVP--PIRKLRENSARLTWLTRAQAQRLLEELP-- 178

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGFMKLL 245
           +  R    F L +GLR S+        +              K G +I+V L +  + +L
Sbjct: 179 THLRQMARFALATGLRESNVRLLEWAQVDRERALAWIHADQAKAGKVISVPLNEDALGVL 238

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATA 304
                  + +        +    ++  ++    +AG+     H +R   A+    AG   
Sbjct: 239 REQQGQHKRYVFVYKGAPIGRI-YNHAWQKACVRAGLSGLRFHDLRHTWASWHVQAGTPL 297

Query: 305 HELMATYGWKTVDQAETYTK 324
             L    GW +      Y  
Sbjct: 298 PILQQLGGWASYQMVLRYAH 317


>gi|157964965|ref|YP_001499789.1| site-specific tyrosine recombinase XerC [Rickettsia massiliae MTU5]
 gi|166918900|sp|A8F2V6|XERC_RICM5 RecName: Full=Tyrosine recombinase xerC
 gi|157844741|gb|ABV85242.1| Tyrosine recombinase XerC [Rickettsia massiliae MTU5]
          Length = 305

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 44/284 (15%), Positives = 109/284 (38%), Gaps = 28/284 (9%)

Query: 69  TTLKWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127
           T+++ LI++++K      + + ++ IS+ +     +     ++   +T  HI++      
Sbjct: 4   TSIQALINKWQKYLVLQRNYSNHTVISYNNDLKHFLEFMNYYNSEFVTINHIKTADIRLI 63

Query: 128 HTP-----------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
            +            SS  + L++++  +++  +   +  +   S++ PK+     +  ++
Sbjct: 64  RSWLAKRHCDNFTTSSISRGLSAVKNFYRFLEKTTQLNSHIIFSIKSPKKTKLLPKALSE 123

Query: 177 ED-------MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229
           +D       ++++ +      + +     +  SGLR S++      HLQN  F     K 
Sbjct: 124 DDVVISLEHIEEYGNVKWVELRNKALLVLIYASGLRISEALSITKLHLQNLEFIRIIGKG 183

Query: 230 GTIITVELPD-------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
                +            ++++L       E  F     +K+    F+          G+
Sbjct: 184 SKERIIPWLPIAKNLITQYLEILPYKLGDNEPIFRGKQGKKLQPPVFNRELIKLKHFYGL 243

Query: 283 --NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             + +AH  R   A+   + GA    +    G K++   + YTK
Sbjct: 244 PQHLTAHSFRHSFASHLLEHGADLRSIQELLGHKSLSTTQNYTK 287


>gi|327398234|ref|YP_004339103.1| integrase family protein [Hippea maritima DSM 10411]
 gi|327180863|gb|AEA33044.1| integrase family protein [Hippea maritima DSM 10411]
          Length = 283

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 43/269 (15%), Positives = 98/269 (36%), Gaps = 20/269 (7%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI----RSGVESRKHT 129
           ++ +Y+        + N++  + SYF        +     ITT  I       ++S+  +
Sbjct: 4   VLRQYKDLLIQKRYSQNTQDIYYSYFKDFCVYFQNEKLMNITTAQINSYILDLIKSKNIS 63

Query: 130 PSSAIQFLTSMRVLFKWAV--RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            S   Q + +++  ++  +   ++Y        + RPK++ +  +  +K++++      S
Sbjct: 64  ISQQNQRINAIKFYYEKVMGGEKQYYE------LHRPKKEHKLPKVLSKKEVKIIFDVTS 117

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK-TGTIITVELPDGFMKLLA 246
              + +     +  +GLR S+        + +    I      G    + L    +  L 
Sbjct: 118 -NLKHKCILMLIYSAGLRRSEPLNLAPTDIDSERMIIHINGAKGKKDRISLLSDNLLNLL 176

Query: 247 MTP----IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADA 300
           +        ++  F        + T  +   K  A KAG+ K+   H +R   AT   + 
Sbjct: 177 LKYYKEYRPQKYLFEGQKGGMYSPTSIANILKKAAIKAGIKKTVTPHMLRHSFATHLLEQ 236

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRI 329
           G     +    G ++    E YT  + + 
Sbjct: 237 GTDLRYIQELLGHESSKTTEIYTHVSKKA 265


>gi|261226303|ref|ZP_05940584.1| site-specific recombinase [Escherichia coli O157:H7 str. FRIK2000]
          Length = 394

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 46/274 (16%), Positives = 98/274 (35%), Gaps = 19/274 (6%)

Query: 65  RKKPTTLKWLISEYRKSAHWGS---LAVNSRIS---FESYFDQIIRKSGDFDYRKITTKH 118
           + +  T+   + +Y K+        L    R++        ++ +      D      + 
Sbjct: 26  KIRKMTISRALDKYLKTVSIHKKGHLQEFYRVNVIKRHPIAERYMDDITTVDIANYRDQR 85

Query: 119 IRSG--VESRKHTPSSAIQFLTSMRVLFKWA-VRQEYVAINPCLSVERPKRKTEGIRPWT 175
           +        R+ T ++    L  +  LF  A V      +NP   V +PK  +   R  T
Sbjct: 86  LAQINPRTGRQITGNTVRLELALLSSLFNIACVEWGTCRMNPVEMVRKPKISSGRDRRLT 145

Query: 176 KEDMQQFKSFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTGTI 232
             + ++   ++ E +Q   + F   L + +R  +      +H+     +  + T K G  
Sbjct: 146 SGEERRLSRYFKEKNQALYVIFHLALETAMRQGEILSLRWEHVDLQHGVAHLPTTKNGAP 205

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRK 291
             V L       L M PI      +N +     ++ F   ++    +  + N   H +R 
Sbjct: 206 RDVPLSRKARSYLQMLPIQ-----LNGNIFSYTSSGFKSAWRTALQELKIENLHFHDLRH 260

Query: 292 FSATISADAG-ATAHELMATYGWKTVDQAETYTK 324
            + +   + G     E+ A  G ++++  + YT 
Sbjct: 261 EAISRFFELGTLNVIEVAAISGHRSLNMLKRYTH 294


>gi|228470660|ref|ZP_04055516.1| putative tyrosine type site-specific recombinase [Porphyromonas
           uenonis 60-3]
 gi|299143043|ref|ZP_07036164.1| integrase [Prevotella oris C735]
 gi|228307668|gb|EEK16647.1| putative tyrosine type site-specific recombinase [Porphyromonas
           uenonis 60-3]
 gi|298575494|gb|EFI47379.1| integrase [Prevotella oris C735]
          Length = 427

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 59/318 (18%), Positives = 120/318 (37%), Gaps = 34/318 (10%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWL---ISEYRKSAHWGSLAVNS----RISFES--YFDQ 101
           +T    K  Y+   R  P TL  L   + EY++     +L+  +    + S++S  +F Q
Sbjct: 90  ITAEYLKERYMQQSRPMP-TLTELYQSVCEYKEELQGRTLSKATVRAFKDSYKSFVHFLQ 148

Query: 102 IIRKSGDFDYRKITTKHIRS----GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINP 157
           +  ++ D    ++    +       +    +  SS    L  +  + + A+++ YV  +P
Sbjct: 149 VRDRA-DCMPTEVDKTLLEDYRLFMLRDLGNKESSVGNRLRHLHQVIRKALQERYVREDP 207

Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGV 214
              ++  +  T      T +D+Q+  ++    S     RL F    ++GL  SD  +  +
Sbjct: 208 FELID-IETPTYERNALTADDLQKLLAYRPHRSTDNHCRLIFLLGCFTGLAFSDLKKLRM 266

Query: 215 QHL-----QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG-KETFFINNDKQKMNATQ 268
             +          S+   KT     V L     K+LA+   G +E  F        + + 
Sbjct: 267 DDVYTFGDGRRYISLCRTKTQNRSIVPLLPVAEKILAIVSHGRREGLFFREF---PSNSN 323

Query: 269 FSIWFKAKATKAGVN----KSAHGVRKFSATIS-ADAGATAHELMATYGWKTVDQAETYT 323
           F+   +    KAG+      ++H  R   AT    + G     +    G + +   E Y 
Sbjct: 324 FNRTIQEICIKAGLPPHTQATSHTARHTFATTICLENGLPIETVSKMLGHRFISTTEIYA 383

Query: 324 KGADRIRLGIKNSRRISS 341
           +   + ++  +    + S
Sbjct: 384 R-VTKSKIAKEMQPLMGS 400


>gi|254451305|ref|ZP_05064742.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 238]
 gi|198265711|gb|EDY89981.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 238]
          Length = 371

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 48/322 (14%), Positives = 110/322 (34%), Gaps = 20/322 (6%)

Query: 9   PFVTKERTRHGKIIYYFRK---GHGRRIRL-PYPHESTFIPAYMSALTGSTPKREYINSP 64
             +     +  K  +YF+K   G  +RI +  +P  S       +        R    + 
Sbjct: 38  KGLVLFVGKRSKT-WYFQKDVGGQTKRILIGRFPIISAQAARQTALGFALEMGRGAGKAA 96

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
           +    TL+  +  Y         +  +++   +     ++        +I+         
Sbjct: 97  QIGAPTLEAAMEVYLARPKLR--SETNKVGMRAQLTLHLKDWMRLPLDEISKAMTVRRHH 154

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
               +PS+A   L S R ++  A R   +   P +++E  + K +G      +   +   
Sbjct: 155 DMAGSPSAANHVLRSFRAIYNHARRTGDLPECPTMAIEWFEDKPDGRIIENLKHWWKTID 214

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
                   R+ +E LL++GLR ++        +  +   +   K G    + +     ++
Sbjct: 215 DLPNPIH-RVFYELLLFTGLRKTEVFTLKWDQIHEDRIHLPMTKNGRSFDLPILQLHHEI 273

Query: 245 LAMT-PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGAT 303
           LA   P+ +E  F          ++     + +     +  + H  R+  AT++ +AG  
Sbjct: 274 LAPLRPLSREWVF------PSPKSESGHITRPER----LKYNPHMHRRTFATVAMEAGVL 323

Query: 304 AHELMATYGWKTVDQA-ETYTK 324
              +        +    + YT+
Sbjct: 324 EEIVGRLLNHTPLSITGQRYTR 345


>gi|315651213|ref|ZP_07904243.1| phage integrase family integrase/recombinase [Eubacterium saburreum
           DSM 3986]
 gi|315486509|gb|EFU76861.1| phage integrase family integrase/recombinase [Eubacterium saburreum
           DSM 3986]
          Length = 327

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 40/277 (14%), Positives = 94/277 (33%), Gaps = 14/277 (5%)

Query: 59  EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH 118
           E     ++  T+ +  +  +  +      +  S   +++  + ++ +    D + I T  
Sbjct: 37  ELTEKQKQGKTSKQNFVELFLSAKRIEGCSEKSLKYYKATIEAMLNEL-QKDVKHIVTDD 95

Query: 119 IRSGV----ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
           IR  +    E +K +  +       +   F W   ++Y+  +P   + + K  T     +
Sbjct: 96  IRGYLTEYQEKKKSSKVTIDNIRRILSSFFAWLEDEDYILKSPVRRIHKVKTGTNIKETY 155

Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234
           + E ++  +   +E  +     + L  +G+R  +        +  N         G+   
Sbjct: 156 SDEALELMRDNCTE-LRDLAIIDMLASTGMRVGEMVLLNRNDIDFNERECIVFGKGSKER 214

Query: 235 VELPDG-----FMKLLAMTPIGKETFFIN--NDKQKMNATQFSIWFKAKATKAGVNK-SA 286
           V   D          L          F++     +++      +  +    K G+ K   
Sbjct: 215 VVYFDARTKIHLQNYLNSRIDDNPALFVSLKEPHKRLKIGGIEVRLREYGKKLGLQKVHP 274

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           H  R+  AT++ D G    +L    G + +D    Y 
Sbjct: 275 HKFRRTLATMAIDKGMPIEQLQQLLGHRKIDTTLQYA 311


>gi|153815865|ref|ZP_01968533.1| hypothetical protein RUMTOR_02110 [Ruminococcus torques ATCC 27756]
 gi|145846890|gb|EDK23808.1| hypothetical protein RUMTOR_02110 [Ruminococcus torques ATCC 27756]
          Length = 400

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 58/369 (15%), Positives = 117/369 (31%), Gaps = 68/369 (18%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEY 78
           G+ I  F    G+R  L     +        A+     + E+  +   +  TL      +
Sbjct: 20  GRYIARFTSKTGKRKTLYDFKLNELKRKLREAVY----EDEHGLNGNGESITLNAWYVTW 75

Query: 79  RKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAI 134
            +     ++ + +     SY++ ++    G    + I T H++  +     +     +  
Sbjct: 76  TELYKKKTVKMTTIYKNHSYYNARVKNSIGKMYLQDIKTYHVQKFINELIDSGLAHGTVS 135

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
                +  +F  AV  EY+  NPC++VE P +  +  R  T+E+ ++F +F S       
Sbjct: 136 NIRFMLSDMFDKAVLSEYIRKNPCIAVEMPPKVKKERRVLTREEQKKFFTFASSYIHI-N 194

Query: 195 AFEFLLYSGLRCSDSCRAGVQH----------------------LQNNIFSIKTQKT-GT 231
             +F + +G R  +      +                       ++ + F   T KT  +
Sbjct: 195 VLKFAVTTGCRIGEVLGLKWEDCDFEKREITINKTIHYSKASSPVEGSKFFYTTAKTISS 254

Query: 232 IITVELPDGFMKLLAMTPIGK------------------ETFFINNDKQKMNATQFSIWF 273
              + + D   ++L    I +                     F  +D   +     +   
Sbjct: 255 NRVIPMTDEVYEILQNQKIKQTEQKMWKRSIWKQHKEFQNLVFTCSDGSPVYYYNVNSAI 314

Query: 274 KAKATK--------AGVNK---------SAHGVRKFSATISADAGATAHELMATYGWKTV 316
           K    K        A   K         + H +R   AT   + G     +    G  T+
Sbjct: 315 KDYVAKINVIEIELAKEEKREPKIFELFTCHTLRHTYATRCYENGVDQQVVQKLLGHSTL 374

Query: 317 DQ-AETYTK 324
               + YT 
Sbjct: 375 AMTTDLYTH 383


>gi|326407821|gb|ADZ64892.1| integrase [Lactococcus lactis subsp. lactis CV56]
          Length = 378

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 46/293 (15%), Positives = 104/293 (35%), Gaps = 39/293 (13%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           T++ +  +++K      L  ++    +  F+  +++ G+ D ++I    I+S + + + +
Sbjct: 68  TIQEVFDDWQKIRK-EELKPSTFHVGKMAFNTFLKRFGEMDIKEINPDQIQSFLFNSQLS 126

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK-------RKTEGIRPWTKEDMQQF 182
           PS+      S  +LF +A    Y+  NP   V  PK        K +  +    E+M+  
Sbjct: 127 PSTRSLRKNSFNLLFTYAKNVGYIEANPVERVVLPKEKNTIEELKKKQNKFLNLEEMRII 186

Query: 183 KSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI----------KTQKT 229
                   +     L +EFL  +GLR  +      + +     ++           ++K 
Sbjct: 187 LEKNKPIEKDIRKLLIYEFLFLTGLRIGEVQALRWEDVDFEKKTLAVTHTLNHQGTSEKN 246

Query: 230 GTII---------TVELPDGFMKLL---AMTPIGKETFFINNDKQKMNATQFSIWFKAKA 277
             ++         T+ + D  +++L         +   F+N        +  +  FK   
Sbjct: 247 RQLLSPKTINSYRTISINDRCLEILNYFYSHLTDELFIFVNKHGDTYCYSILARHFKKVC 306

Query: 278 TKAG-----VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
              G        + H +R    ++  + G     +M   G        + Y+ 
Sbjct: 307 QVLGEETSQRKYTLHMLRHSHISLLIEIGIPIKTIMERVGHSNEQMILQIYSH 359


>gi|325299603|ref|YP_004259520.1| Tyrosine recombinase xerC [Bacteroides salanitronis DSM 18170]
 gi|324319156|gb|ADY37047.1| Tyrosine recombinase xerC [Bacteroides salanitronis DSM 18170]
          Length = 292

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 41/266 (15%), Positives = 92/266 (34%), Gaps = 23/266 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSG---VES 125
           L   + K   +  + +  + +S+                  D+  +    IR     +  
Sbjct: 2   LKESFLKYLQFEKNYSEKTVVSYGIDLSGFEAYFKAVDETLDFATVDADVIRGWVVSLMD 61

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
             +  SS  + L+S+R  +++ +R++ V+++P   V  PK+K        + DM +    
Sbjct: 62  EGYAASSVNRKLSSLRSFYRYLLREKVVSVDPVRKVTGPKKKKPLPVFVKEADMDRLLDA 121

Query: 186 WS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDG 240
                 E  + +        +G+R S+       ++  +  +IK T K      +   + 
Sbjct: 122 ECGTDFESVRNKAIVAVFYETGIRLSELIGLKDANVDFSAGTIKVTGKRNKQRVIPFGEE 181

Query: 241 FMKLLAMT--------PIGKETFFINNDKQKMNATQFSIWFKA--KATKAGVNKSAHGVR 290
              +L +             E FF+  + + M      +  +       A   +S H +R
Sbjct: 182 LENILQVYLSARNEYCHTECEAFFVRKEGKAMYPGMVYLLVRQNLSRVVALKKRSPHVLR 241

Query: 291 KFSATISADAGATAHELMATYGWKTV 316
              AT   +  A    +    G +++
Sbjct: 242 HSFATAMLNNQAGLEAVKELLGHESL 267


>gi|320352532|ref|YP_004193871.1| integrase family protein [Desulfobulbus propionicus DSM 2032]
 gi|320121034|gb|ADW16580.1| integrase family protein [Desulfobulbus propionicus DSM 2032]
          Length = 357

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 56/334 (16%), Positives = 112/334 (33%), Gaps = 32/334 (9%)

Query: 26  RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG 85
           R  +G+R R       +F+    + L  S    + I   +     L    +EY + A   
Sbjct: 19  RIVNGKRQR------KSFLTKKEALLWESEQLPDEIAEQKTHSVCLLDWATEYLRHAE-Q 71

Query: 86  SLAVNSRISFESYFDQIIRKSG---DFDYRKITTKHIRSGVESRKHTPS--SAIQFLTSM 140
           +    +       F Q    SG        ++T   ++  ++ +  + S  +A +   ++
Sbjct: 72  NFTGKTFDEKRMAFRQFFAYSGINPKESANRLTALQVQKALQRQSISRSGNAANKDRKNL 131

Query: 141 RVLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199
              + W V+  +  + NP   VE+   +       T +D  +         Q +L     
Sbjct: 132 SAAWSWGVKFLQLPSENPFSKVEKFASERFERYVPTLDDFWKVFHSL-VQDQDKLMLYCY 190

Query: 200 LYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGT----IITVELPDGFMKLLAMTPIG-- 251
           L +G R  +  R     +        +  +K          + + D   + L     G  
Sbjct: 191 LQTGARRDELFRLTWADVDFFRKRIRLSWRKNKVGEWRSQWLSIKDDLAEWLLRHKKGNS 250

Query: 252 --KETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELM 308
             KE  F++   + +       W K    +AGV     HG+R   A+I A       E+ 
Sbjct: 251 DLKEHVFVS--YRSLAYQYRQHWLKKVCKEAGVKPFGFHGIRHLFASILAAQNVPLVEIQ 308

Query: 309 ATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
                 ++   + Y       RL  +N   ++++
Sbjct: 309 YMLRHTSLATTQRYIH-----RLKKENREVLAAL 337


>gi|153009174|ref|YP_001370389.1| phage integrase family protein [Ochrobactrum anthropi ATCC 49188]
 gi|151561062|gb|ABS14560.1| phage integrase family protein [Ochrobactrum anthropi ATCC 49188]
          Length = 426

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 56/303 (18%), Positives = 94/303 (31%), Gaps = 38/303 (12%)

Query: 59  EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTK 117
           E +   RK    L  L+ E+ K     +    +    +   ++ ++ K G      +T  
Sbjct: 94  ERVERQRKSSDILTDLVDEFLKKHAAQN---KTHDETKRILERELLSKHGKKSIHVVTKH 150

Query: 118 HIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
            I S +E  +    P  A + L ++R    W V ++ +AI+P   +  P R+    R  T
Sbjct: 151 DILSVLEGIRDRGAPYMANRVLAAIRKFMNWCVSRDIIAISPANGISLPTREVSRDRVLT 210

Query: 176 KED-MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKTG 230
            ++      +  S G       E L  +  R  +        L  +  +        K G
Sbjct: 211 ADETRAALMAAKSVGYPYGNIVELLFLTAQRRDEVGDMRWSELNLDKATWTIPAERVKNG 270

Query: 231 TIITVELPDGFMKLLAMTP-------IGKETFFINNDKQKMNATQFSI---------WFK 274
               V L    + LL   P       +  +  F        +    S            +
Sbjct: 271 KAHDVHLSKDALALLHSIPRFVSADNVESDLVFTTTGNTPFSGYSKSKTTLDKKMLEVLQ 330

Query: 275 AKATKAGVN--------KSAHGVRKFSATISADAGATAHELMATYGWKTV---DQAETYT 323
             A   GVN           H +R+   T  +  G   H   A    K+      A  Y 
Sbjct: 331 KMAEDKGVNPELVKLTPWRLHDIRRTVTTELSKLGVAIHVADAILNHKSGVISGVAAVYQ 390

Query: 324 KGA 326
           K A
Sbjct: 391 KNA 393


>gi|39933583|ref|NP_945859.1| tyrosine recombinase XerD [Rhodopseudomonas palustris CGA009]
 gi|39647429|emb|CAE25950.1| site-specific integrase/recombinase XerD [Rhodopseudomonas
           palustris CGA009]
          Length = 338

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 45/279 (16%), Positives = 90/279 (32%), Gaps = 31/279 (11%)

Query: 80  KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
            SA+              +  +     G  D   +  +   + +++R    SS  + L++
Sbjct: 47  ASANTLDAYRRDLADLSHFLSRRRLSIGSADTAAL--RSYLADLDNRGFATSSVARRLSA 104

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS-------FWSEGSQP 192
           +R LF++ + +   A +P   +  PKR     +  +  D+ Q  +           G++ 
Sbjct: 105 LRHLFRFLLSERIRADDPAAILAGPKRGRSLPKVLSIADVDQLLACARQEIDAAEGGARL 164

Query: 193 RLA-----FEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVEL--------- 237
           R A      E L  +GLR S+     +   + +    +   K      V L         
Sbjct: 165 RAARLNCLLEVLYATGLRVSELVSLPLSAARRDARMIVVRGKGDKERLVPLNAGAKQAMA 224

Query: 238 --PDGFMKLLAMTPIGKETFFINNDKQK--MNATQFSIWFKAKATKAGVN---KSAHGVR 290
              +      A        +   +  +   +    F+   K  A +AG+     S H +R
Sbjct: 225 RYLEEMAAAKAPKDGPAPKWLFPSFGESGYLTRQHFARDLKDLAARAGLAPRLVSPHVLR 284

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              A+     GA    +    G   +   + YT   +  
Sbjct: 285 HAFASHLLHNGADLRIVQTLLGHSDISTTQIYTHVVEER 323


>gi|15604648|ref|NP_221166.1| site-specific tyrosine recombinase XerC [Rickettsia prowazekii str.
           Madrid E]
 gi|34223090|sp|Q9ZCE0|XERC_RICPR RecName: Full=Tyrosine recombinase xerC
 gi|3861343|emb|CAA15242.1| PROBABLE INTEGRASE/RECOMBINASE RIPX (xerC) [Rickettsia prowazekii]
 gi|292572467|gb|ADE30382.1| Tyrosine recombinase XerC [Rickettsia prowazekii Rp22]
          Length = 305

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 47/283 (16%), Positives = 109/283 (38%), Gaps = 28/283 (9%)

Query: 70  TLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI--------R 120
           +++ LI +++K      + + N+ I++ +     +     ++   +T  HI        R
Sbjct: 5   SIQELIKQWQKYLILQKNYSNNTVIAYNNDLKHFLEFMNYYNSELVTLNHIKTADIRLIR 64

Query: 121 SGVESRK---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
           S +  RK    T SS  + L++++  +K+  +   +  +   S++ PK+     +  + +
Sbjct: 65  SWLAKRKCENFTASSIARGLSTVKNFYKFLEKTLLLNNHIIFSIKSPKKAKLLPKGLSVD 124

Query: 178 D-------MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
           D       ++++ +      + +     +  +GLR S++      HLQN  F     K  
Sbjct: 125 DVLISLEHIEEYGNVKWVELRNKALIVLIYAAGLRISEALSITKLHLQNLEFIKIIGKGS 184

Query: 231 TIITVELPD-------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
               +            ++++L       E  F     +K+  + F+          G+ 
Sbjct: 185 KERIIPWLPLTKNLITKYLEILPYKLDENEPIFRGRQGKKLQPSVFNRELIKLKRIYGLP 244

Query: 284 --KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              +AH  R   A+   + GA    +    G K++   + YT+
Sbjct: 245 EYLTAHSFRHSFASHLLEYGADLRSIQELLGHKSLSTTQKYTQ 287


>gi|84501636|ref|ZP_00999808.1| tyrosine recombinase [Oceanicola batsensis HTCC2597]
 gi|84390257|gb|EAQ02816.1| tyrosine recombinase [Oceanicola batsensis HTCC2597]
          Length = 310

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 42/274 (15%), Positives = 90/274 (32%), Gaps = 28/274 (10%)

Query: 85  GSLAVNSRISFESYF--------DQIIRKSGDFDYRKITTKHIRSGVESRKH---TPSSA 133
              +  +  ++            + +    G     ++TT  +R+ +   +       S 
Sbjct: 24  RGASEATIGAYRRDLVDYLSFMTEHLGGPQGIAALGRVTTSDMRAWMARERGAGLGARSL 83

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF-------KSFW 186
            + L++++  ++W   +E + + P LS   P+ +    RP  ++  +          +  
Sbjct: 84  ARKLSAVKTFYRWLAEREGLEVTPVLSARAPRYQRSLPRPLAEDAARAMIETVGSSDTRP 143

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP-------D 239
              ++       L   GLR S++    V  L          K G    V L        +
Sbjct: 144 WVAARDAAVVTLLYGCGLRISEALSLTVDDLPLGDSLRIRGKGGKERIVPLIAPARQAVE 203

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATIS 297
            +++++          F       ++A       +      G+  +A  H +R   AT  
Sbjct: 204 AYLEIMPHPVTSGAPLFRAIRGGALSARTVQKSMERARMGLGLPATATPHAMRHSFATHL 263

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
             AG     +    G  ++   + YT G D  RL
Sbjct: 264 LSAGGDLRSIQDLLGHASLSTTQVYT-GVDTARL 296


>gi|326800846|ref|YP_004318665.1| integrase family protein [Sphingobacterium sp. 21]
 gi|326551610|gb|ADZ79995.1| integrase family protein [Sphingobacterium sp. 21]
          Length = 392

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 51/264 (19%), Positives = 96/264 (36%), Gaps = 25/264 (9%)

Query: 88  AVNSRISFESYFDQIIRKSGD--FDYRKITTKHIR---SGVESRKHTPSSAIQFLTSMRV 142
           +  +  +  +   Q I   G     + +IT + IR   + +     + ++   +   +R 
Sbjct: 131 SNQTWRNQRNCLRQFIDFWGSPLIPFHEITQEKIREYDAYLRKLDKSHNTITGYHKVIRK 190

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL--- 199
               A +Q  + +NP   +   +      RP  + ++++    + +        E L   
Sbjct: 191 FLNAAEKQNIIKVNPYNGLT-FRYVPGSRRPLEQVELKRLMDIYYKKPLMHSVREVLRRF 249

Query: 200 ---LYSGLRCSDSCRAGVQHLQNNIFSIKTQKT---GTIITVELPDGFMKLLAMTPIGKE 253
                +G+R SDS R     +  N  + K +KT   G   T+ LP   + L+     G+E
Sbjct: 250 LFSCLTGVRISDSHRLHRNMIVGNKLTFKMKKTERYGRTATIPLPKAALDLVE----GQE 305

Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATY 311
            +       K      + + K  A  AG+ K  + H  R    TI  + G     L    
Sbjct: 306 GYLFT----KFADKTINEYLKVIAVIAGIEKNLTYHCARDTFGTIFIELGGDIKSLCDIM 361

Query: 312 GWKTVDQAETYTKGADRIRLGIKN 335
           G       E Y K +D+ +  + N
Sbjct: 362 GHSDTRITEIYLKMSDQRKQNLMN 385


>gi|296100765|ref|YP_003610911.1| putative integrase [Enterobacter cloacae subsp. cloacae ATCC 13047]
 gi|295055224|gb|ADF59962.1| putative integrase [Enterobacter cloacae subsp. cloacae ATCC 13047]
          Length = 398

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 59/291 (20%), Positives = 115/291 (39%), Gaps = 21/291 (7%)

Query: 48  MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISF----ESYFDQII 103
            S  TG+ PK+E  N  ++   T   L ++     H+   A +++ S+    + Y D I 
Sbjct: 87  RSLATGTDPKQEREN--KRMELTFDELFNQ-----HYLPWAKSAKRSWGKDVQRYRDHIR 139

Query: 104 RKSGDFDYRKITTKHIRSGVESRKHTPSSA--IQFLTSMRVLFKWAVRQEYVAINPCLSV 161
              G      IT   I    ++   + S+A   + +  ++ +F WA RQ   +++P   V
Sbjct: 140 PAIGQRLLSDITPASILRLQQTLSTSLSAATCNRVIVLIKAVFTWAGRQSMTSVHPARVV 199

Query: 162 ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF--EFLLYSGLRCSDSCRAGVQHLQ- 218
           +  +      R +T++++++        + P  A   + LL +GLR  +   A  +H+  
Sbjct: 200 QLLRENNARQRYFTEDEIRRIFLSADNDTSPVAARYVKLLLLTGLRRDELRLAKWEHVDP 259

Query: 219 -NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK-ETFFINNDKQKMNATQFSIWFKAK 276
                 +   K G    V L    M ++   P  +   +     KQ M  +     F+  
Sbjct: 260 VKRTLWLPETKNGYGRIVHLNSLAMDVIRTLPTQRGNPWLFIGKKQGMPLSNPVKAFQRI 319

Query: 277 ATKAGV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             +AG+       H  R   A +    G T +++ A  G ++   ++ Y  
Sbjct: 320 VRRAGIFDKEVCIHTCRHSVAALIVSYGGTLYDVQAQLGHRSSQSSQRYAH 370


>gi|288959341|ref|YP_003449682.1| integrase/recombinase [Azospirillum sp. B510]
 gi|288911649|dbj|BAI73138.1| integrase/recombinase [Azospirillum sp. B510]
          Length = 321

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 41/244 (16%), Positives = 79/244 (32%), Gaps = 21/244 (8%)

Query: 110 DYRKITTKHIRSGVESRK---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS-VERPK 165
           D   +     R+ +          +S  + L ++R LF+W + +     NP ++ +  PK
Sbjct: 68  DLGDLKAADFRAWMSRLAMDGLVGASRARKLAAVRNLFRW-MDRGGRLHNPAVATLATPK 126

Query: 166 RKTEGIRPWTKEDMQQFKSFWS-------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218
            K    RP T+ D  +              G + R  F  L   GLR S++     +   
Sbjct: 127 VKRPAPRPLTEIDADRLLEEAEREREEPWIGKRDRALFTLLYGCGLRISEALGLAARDAP 186

Query: 219 NNIFSIKTQKTGTIITVELPDGFMKLLAM-------TPIGKETFFINNDKQKMNATQFSI 271
                  T K      + +     + +         T       F+     ++NA+    
Sbjct: 187 LGDTLRVTGKGRKDRMIPILPAVTEAVRAYLDSCPFTLAPDGPLFVGTRGGRLNASIAQH 246

Query: 272 WFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             +      G+  N + H +R   AT     G     +    G  ++   + YT   +  
Sbjct: 247 QMQKLRALMGMPDNATPHALRHSFATHLLADGGDLRAIQDLLGHASLSTTQRYTDVENEQ 306

Query: 330 RLGI 333
            + +
Sbjct: 307 LMNV 310


>gi|94972399|ref|YP_595617.1| integrase/recombinase [Lawsonia intracellularis PHE/MN1-00]
 gi|94731936|emb|CAJ53953.1| similar to integrase/recombinase [Lawsonia intracellularis
           PHE/MN1-00]
          Length = 361

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 38/269 (14%), Positives = 93/269 (34%), Gaps = 30/269 (11%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKH---IRSGVESRKHTPSSAIQFLTSMRVLF 144
           +  +   +  Y   +I      D+  IT++         +     P++    + +++  F
Sbjct: 83  SFATMELYARYITDLINYV-QKDFHHITSQDVDAFIRYRQLNGSKPATINTIIGALKSFF 141

Query: 145 KWAVRQEYVAINPCLSVERPKRKTE------GIRPWTKEDMQQ-FKSFWSEGS--QPRLA 195
           +  V    + +NP   +++ +  T+           ++ ++Q+ F     +G+  + +  
Sbjct: 142 RHLVDAGILTLNPTAFLKKRRNDTKQNLPGHLSHSLSESELQRLFDGMIEQGASLRDQAL 201

Query: 196 FEFLLYSGLRCSDSCRAGVQHL---QNNIFSIKTQKTGTIITVELPDG----------FM 242
            + L  +G+R  ++ R    H+   Q+  +     K      V LP             +
Sbjct: 202 MQVLFLTGIRAEEAVRLKWSHIVTWQSRWYLDVFGKGSKRRRVYLPIQALTVIQEYGKLL 261

Query: 243 KLLAMTPIGKETFF--INNDKQKMNATQFSIWFKAKATK--AGVNKSAHGVRKFSATISA 298
            +        +  F  +    + ++     +  K    +     + S H  R    T  A
Sbjct: 262 GIELGLASNSKPLFAHLRRPNEHISRHGLYVLVKKWCKRLLGRTDVSPHWFRHSCFTQLA 321

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGAD 327
             GA+   + A  G ++V+    Y + A 
Sbjct: 322 HKGASLESIKALAGHESVETTMQYNEAAQ 350


>gi|28895789|ref|NP_802139.1| integrase (phage associated) [Streptococcus pyogenes SSI-1]
 gi|28811038|dbj|BAC63972.1| putative integrase (phage associated) [Streptococcus pyogenes
           SSI-1]
          Length = 303

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 47/280 (16%), Positives = 88/280 (31%), Gaps = 26/280 (9%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           T   L  ++ K             +  +    I+ K        I    I+   E   + 
Sbjct: 2   TFGALTDQWLKEYEKTVQCSTYLKTERNINKHILPKLDKVKIGDINPLLIQRLTEEWCND 61

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG---IRPWTKEDMQQFKSFW 186
                + L  +R +   AVR  Y+  NP L +  PK K +       +T + ++QF    
Sbjct: 62  LKYGGKILGLVRNILNLAVRYGYINNNPALPITPPKIKRKRKMNNNFYTLDQLKQFLELV 121

Query: 187 SEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL------- 237
            +         F  L ++G+R  +        L  N  SI    T T + +E+       
Sbjct: 122 EKTDNIEKIALFRLLAFTGIRKGELLALTWDDLNGNTLSINKAVTRTQVGLEIDVTKTKS 181

Query: 238 -----------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-S 285
                       +  ++L    P     F  +     M  +    W         + + +
Sbjct: 182 SDRLISLDDETLEILLELHETFPTSTLMF-QSESGGIMTPSLPRKWLLQIIKGTDLPQIT 240

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTK 324
            HG R   A++  ++G +  ++    G   +      YT 
Sbjct: 241 IHGFRHTHASLLFESGLSLKQVQHRLGHGDLQTTMNVYTH 280


>gi|15891311|ref|NP_356983.1| site-specific tyrosine recombinase XerD [Agrobacterium tumefaciens
           str. C58]
 gi|34222927|sp|Q8U9U6|XERD_AGRT5 RecName: Full=Tyrosine recombinase xerD
 gi|15159692|gb|AAK89768.1| site-specific recombinase [Agrobacterium tumefaciens str. C58]
          Length = 331

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 44/283 (15%), Positives = 94/283 (33%), Gaps = 43/283 (15%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDF-----DYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
              A N+  S+E     +    G       + +        + + ++    +S  + L+S
Sbjct: 25  RGAAANTLSSYEHDLADLREFLGRRGQSLTEAQTPDLSAYLTHLAAQGFAATSQARRLSS 84

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS--------- 190
           MR  +++   +     +P   ++ P++     +  +  D+ +     ++ +         
Sbjct: 85  MRQFYRFLYSEGLRGDDPTGIIDAPRKGLALPKTMSVADVNRLLGLAAQEAATEGPGQLA 144

Query: 191 --QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAM 247
             +  L  E L  +G+R S+     V+ L+    F +   K      V L    ++ +  
Sbjct: 145 RIRMHLLLELLYATGMRVSELVSLPVKVLRQEGRFLMIRGKGNKDRMVLLSRAAIEAMEK 204

Query: 248 TPIGKETF----------------------FINNDK-QKMNATQFSIWFKAKATKAGVNK 284
              G++                        F +N K   +    F+   K  A +AG+  
Sbjct: 205 YEAGRKALSQEKSKAAASQKKTDTAESPWLFPSNSKEGHLPRQVFARDLKDIAIRAGLTA 264

Query: 285 SA---HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           SA   H +R   A+     GA    +    G   +   + YT 
Sbjct: 265 SAVSPHVLRHAFASHLLQNGADLRAVQELLGHSDISTTQIYTH 307


>gi|296171500|ref|ZP_06852764.1| integrase/recombinase XerD [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295894062|gb|EFG73823.1| integrase/recombinase XerD [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 298

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 37/267 (13%), Positives = 82/267 (30%), Gaps = 26/267 (9%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDFD-----YRKITTKHIRSGVESRKHTPSSAIQFLTSM 140
             + ++R ++      ++    D             +   S   +     ++  +  +++
Sbjct: 17  GRSAHTRRAYLGDLRSLLTFLADRGAGLDGLSLPLLRSWLSAGAAAGAARTTLARRTSAV 76

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED-MQQFKSF-------WSEGSQP 192
           +    WA R+  +A +P   ++ PK          ++  +    +             + 
Sbjct: 77  KAFTAWAARRGLLAADPGARLQVPKAHRTLPAVLRQDQALDAMAAAKSGAQQGDPMALRD 136

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM---- 247
           RL  E L  +G+R S+ C   V  +      ++   K     TV         L      
Sbjct: 137 RLIVEMLYATGIRVSELCGLDVDDVDTGHRLVRVLGKGNKQRTVPFGMPAADALRAWLDD 196

Query: 248 ------TPIGKETFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSAHGVRKFSATISAD 299
                 T        +    ++++  Q          A     +   HG+R  +AT   +
Sbjct: 197 GRPALVTAESGPALLLGARGRRLDVRQARTVVHQTVSAVDGAPDMGPHGLRHSAATHLLE 256

Query: 300 AGATAHELMATYGWKTVDQAETYTKGA 326
            GA    +    G  ++   + YT  A
Sbjct: 257 GGADLRVVQELLGHSSLATTQLYTHVA 283


>gi|307592267|ref|YP_003899858.1| integrase family protein [Cyanothece sp. PCC 7822]
 gi|306985912|gb|ADN17792.1| integrase family protein [Cyanothece sp. PCC 7822]
          Length = 338

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 46/296 (15%), Positives = 88/296 (29%), Gaps = 53/296 (17%)

Query: 88  AVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVES-RKHTPSSAIQFLTSMR 141
           A ++  ++ +   Q      I+        + T    R  +   +K+ P+S    LT +R
Sbjct: 30  ADDTLKTYSAALKQFLTWCKIKAISPMCATEGTICSYRQYLLKTKKYKPASVALKLTVVR 89

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIR---PWTKEDMQQFKSFWS-----EGSQPR 193
             +  A +Q ++A NP   V+ P +  +           + +Q              + R
Sbjct: 90  RFYTMATKQGFIAANPATDVKPPTQSYDPATHNNYLDLTEAKQLIESLPNDDSLPSLRDR 149

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKLLAM---- 247
              E +++ G R  +  R  V  +  +N    +  Q   +   V L     +LL      
Sbjct: 150 ALIEIMVWQGCRTVELYRLNVGDIIKRNEDLGLNVQGKRSRRIVPLTPDLAQLLQKYLKA 209

Query: 248 ---------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAG----------------- 281
                          T    N   ++     +          G                 
Sbjct: 210 RKKAGEILKADTPLFTSLTRNKGSRLTRRSIARIVDKYLKINGWKNNNLDEHQVDHDDFD 269

Query: 282 -------VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
                     SAH +R    T++  AG +  ++    G +  +    Y    DR R
Sbjct: 270 DLFICSPRKLSAHSLRHTCGTLALWAGVSLRQVQDLLGHRDPETTALYAHAGDRWR 325


>gi|228960186|ref|ZP_04121843.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus thuringiensis serovar pakistani str. T13001]
 gi|228799454|gb|EEM46414.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus thuringiensis serovar pakistani str. T13001]
          Length = 376

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 44/293 (15%), Positives = 96/293 (32%), Gaps = 28/293 (9%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHT 129
              L+  + +     S   ++   ++     +++ + G+     I    + +  +     
Sbjct: 63  FSQLVEIWMQEKE-SSCRPSTLYQYKRILRSRVMPEFGEKRLSDIKPLTVHNFHQKLLKE 121

Query: 130 PSSAIQFLTS---MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             +     +    ++ +    V  E +  NP    +RPK K +    WT E+  +F  + 
Sbjct: 122 GLTTKYISSVDVMLKQILDKGVELEMINSNPAKKAKRPKVKKKAQASWTVEEAMKFMEYA 181

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT------------ 234
                  +AF   L++G+R  +        +     +I  Q+T T++             
Sbjct: 182 KIQGSYYIAFVLALHTGMRIGEVLALQWDDINFENKTIHVQRTLTLVDGKYELGETKTEA 241

Query: 235 ----VELPDGFMKLLAMTPIGK-----ETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284
               + + +  M  L      K     +      +K+ ++        KA      V   
Sbjct: 242 SNRIIPMTEELMGELLEYQSHKKENSFDLLICTRNKKIVHPYTIRYQMKALCEAIDVPYI 301

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNS 336
             H +R+   TI  D+GA A  +    G   V      YT   +  ++ +   
Sbjct: 302 RFHDIRRTFTTILIDSGANAKVVSKLLGHTNVSTTLNIYTDVYEERQIEVTEM 354


>gi|228961482|ref|ZP_04123093.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis serovar pakistani str. T13001]
 gi|228798196|gb|EEM45198.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis serovar pakistani str. T13001]
          Length = 367

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 47/294 (15%), Positives = 101/294 (34%), Gaps = 44/294 (14%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE----S 125
               I +Y K+    +L   +  ++    D  II   G+     I T H+ +       +
Sbjct: 56  FAEWIQKYAKT----NLQKTTLFNYIHILDTHIIPVLGNKKVEDIKTIHLVTLFHGKLPA 111

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +    ++     T +++LFK A    ++  NP   V + K K + ++P+ ++++ +  + 
Sbjct: 112 KGLATTTINSIHTRVKMLFKKACEWGFIKKNPMDGVSKLKNKRQELQPYDQKEIVKILAL 171

Query: 186 WS-EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---------------NNIFSIKTQKT 229
              E    ++ F+  + +G+R  +       H+                     +K  KT
Sbjct: 172 TEQEKDMNKMLFQLAIVTGMRRGELLGLEWGHIDFQNDMVHIQQTIVRAGKEILLKEPKT 231

Query: 230 -GTIITVELPDGFMKLLAMTPI--------------GKETFFINN--DKQKMNATQFSIW 272
             +   + +P  F   L                   G+E  F+ +  + + +   + S  
Sbjct: 232 SKSKRIISIPPTFTTKLKQYKKYCAEKRIACGDLWEGEEHLFLFSTWNGRPLTPEKASTR 291

Query: 273 FKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTK 324
           ++    K G+     HG+R   AT     G     +    G   +      Y  
Sbjct: 292 WQYFTQKHGLRHIKLHGLRSTHATYLLTQGENLKVISERLGHSDIQTTMNIYAH 345


>gi|239828404|ref|YP_002951028.1| integrase [Geobacillus sp. WCH70]
 gi|239808697|gb|ACS25762.1| integrase family protein [Geobacillus sp. WCH70]
          Length = 301

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 99/302 (32%), Gaps = 36/302 (11%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFE----SYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127
           +  I  + +  +  +    +  S+      + +   ++ G+    +     ++  +   K
Sbjct: 2   QQFIDPFVRYLYEEAKDKKTIASYRTTVAHFLEWYEQREGNIIIEETRPVDVKEYISYLK 61

Query: 128 H----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK---RKTEGIRPW-TKEDM 179
           H     P++  +++ +++V F +      V  NP   ++  K    +      W TKE+ 
Sbjct: 62  HQCKRKPATINKYIAALKVFFSYLTEVGLVKDNPMTRIKTEKIEYAQGSSQTKWLTKEEQ 121

Query: 180 QQFKSFWSE------GSQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKT 229
           ++F S+           +     + ++Y+GLR ++     +  +     +    ++  K 
Sbjct: 122 ERFISYVELEKNEFKRLRNLAIIDLMIYAGLRVNEVASLELSDIQVKGNDVEIIVRQGKG 181

Query: 230 GTIITVEL-----------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKAT 278
               +V L                 L   T    +  F++     +            A 
Sbjct: 182 NKYASVLLVQKYSRNLRKWLKYRQNLEKSTHKESQRLFVSERSMFLTERAIQKMLTKYAD 241

Query: 279 KAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
            A + N + H  R       A+AG     +      +++     Y   +      ++  R
Sbjct: 242 LANMKNITPHRFRHSFCKNLANAGTPIEIIRRLARHESIQTTAIYVDAS--KEEQVQALR 299

Query: 338 RI 339
           ++
Sbjct: 300 KM 301


>gi|160875127|ref|YP_001554443.1| integrase family protein [Shewanella baltica OS195]
 gi|160875848|ref|YP_001555164.1| integrase family protein [Shewanella baltica OS195]
 gi|160860649|gb|ABX49183.1| integrase family protein [Shewanella baltica OS195]
 gi|160861370|gb|ABX49904.1| integrase family protein [Shewanella baltica OS195]
 gi|315267318|gb|ADT94171.1| integrase family protein [Shewanella baltica OS678]
          Length = 287

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 41/267 (15%), Positives = 88/267 (32%), Gaps = 21/267 (7%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----SRK 127
             L+ ++         +  +R ++     Q+ +   +  +  IT + + +        R 
Sbjct: 2   SSLLQQFHDEISLRGYSARTRNAYLYAITQL-QHYANQPFDNITDEQLTAYFRYLNLERH 60

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           H+ ++    L  +   ++  + +++      + +  PKR  +  +  + +D+        
Sbjct: 61  HSRATLKLQLNGIHFFYEHVLGRDF-----TVQLSLPKRPHKLPQLLSCQDIAALL-CHC 114

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLL 245
           +  + R         GLR S+     V  +      +K    K      V +    + LL
Sbjct: 115 QNLKQRAMLALCYGCGLRVSELTHIKVADIDGQRQLLKVCQGKGAYDRLVIISPTLLTLL 174

Query: 246 A---MTPIGKETFFINNDK---QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS 297
                     E  F +        ++ + F       A  A +    S H +R   AT  
Sbjct: 175 RQYWRAYHPVEWLFASTYHDVVYPLHESTFRKALAKAARLASITKPCSPHSLRHAYATHQ 234

Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324
             AG   H+L A  G  ++   E Y  
Sbjct: 235 LQAGMPLHQLQAQLGHHSIKSTERYLH 261


>gi|299529229|ref|ZP_07042673.1| phage-related integrase [Comamonas testosteroni S44]
 gi|298722753|gb|EFI63666.1| phage-related integrase [Comamonas testosteroni S44]
          Length = 340

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 56/352 (15%), Positives = 110/352 (31%), Gaps = 46/352 (13%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
           P     + + G   YYF  G   R  +P   +      Y  A+            P  + 
Sbjct: 2   PNFRARKQKSGTTYYYFDTGAKPRKEIPLGSD------YRVAVQKWLELSAMPARPVSE- 54

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD---FDYRKITTKHIRSGVES 125
                L  +Y         A +++ +      ++     +        I  KHI   ++ 
Sbjct: 55  -NFAELADKYEAEVIPLK-AKSTQATQLGDLKKLRTFFCNPTPAPLNAIKPKHIYLLLQW 112

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVA-INPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
            K TP++A +       +F  A    +    NPC  +E           +  +++  ++ 
Sbjct: 113 AKDTPTTANRLKRVFSHMFNMARAWGWTENENPCTGIEGHSLGKR--EVYISDEV--YRL 168

Query: 185 FWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
            +  G+   + A +    +G R  D+       + +    IK  KT   +   +      
Sbjct: 169 VYEHGNVALKDAMDLAYLTGQRPGDTLSLTDHDIIDGYLVIKQSKTSAALRFIIEGELNA 228

Query: 244 LLAMTPIGKET-------FFINNDKQKMNATQFSIWFKAKATKAG--VNKS--------- 285
           LL      K +         ++   + M+       F+   + A    +KS         
Sbjct: 229 LLDRIEERKRSHKTWSANLLVSQYGKAMSKQMLRKAFETARSDAADEADKSGNAALAAQI 288

Query: 286 ----AHGVRKFSATISADAGATAHELMA--TYGWKTVDQAE-TYTKGADRIR 330
                + +R  +A   AD      EL A    G  +V   +  Y +   R++
Sbjct: 289 RAFWFYDLRAKAADDVADERG---ELAASKQLGHTSVQTTKRHYLRRGTRVQ 337


>gi|297620912|ref|YP_003709049.1| putative integrase [Waddlia chondrophila WSU 86-1044]
 gi|297376213|gb|ADI38043.1| putative integrase [Waddlia chondrophila WSU 86-1044]
          Length = 367

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 63/351 (17%), Positives = 124/351 (35%), Gaps = 42/351 (11%)

Query: 24  YFRKGHGRRIRLPY-PHESTFIPAYMSALTGSTPKREYINSPRKKPTT------LKWLIS 76
           Y+R     +IRL   PH S    ++  A          I S +   TT      L  LI 
Sbjct: 22  YYRV----QIRLKGCPHISKNFDSFQKAKDWKRKTIAAIQSGQPYETTEMRRLTLSDLID 77

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP------ 130
            +  S     L + +  + + +      + G     ++    I    +  K  P      
Sbjct: 78  RFISSDL---LKLRNHKTIKGHLSWWKDEIGYCILSQLREDIIAQARDKLKEQPDKWGRS 134

Query: 131 ---SSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
              ++  ++L S+  +   AVR+   +  +P  +V +        R  +KE+ +Q     
Sbjct: 135 RSSATVNRYLCSLGSVINLAVREWRLLPYSPLKNVRKLPEPRGRERFLSKEEKKQLLLAC 194

Query: 187 SEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFM 242
              S   L       L +G+R  +      +H+   N   +++  K      V +PD  +
Sbjct: 195 QNSSCKLLYPIVLLALSTGMRKGEILNLKWKHVDLTNGSVTLEHTKNNDRRVVPVPDISL 254

Query: 243 KLLAMTPIGKETF------FINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSAT 295
            +L         F      ++ + K+  N   F   +KA   +A + +   H +R    T
Sbjct: 255 NILKSLRAHCAHFGELTDEYVFSQKKGHNPIDFRASWKAALKQAKIKDFKFHDLRHDFIT 314

Query: 296 ISADAGATAHELMATYGWKTVD-QAETYTKGADRIRLGIKNSRRISSVVDS 345
             ++     H +    G ++    A  Y+       LG+ +++  S+ + S
Sbjct: 315 TLSELKYPLHVISKIVGHRSHTITATRYSH------LGLDHAKEASADIGS 359


>gi|78777937|ref|YP_394252.1| Phage integrase [Sulfurimonas denitrificans DSM 1251]
 gi|78498477|gb|ABB45017.1| Phage integrase [Sulfurimonas denitrificans DSM 1251]
          Length = 270

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 35/247 (14%), Positives = 84/247 (34%), Gaps = 16/247 (6%)

Query: 85  GSLAVNSRISF-ESYFDQI--IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMR 141
              +  +  S+ ES  + +  I    D ++  +     R  + +    P +  + L+++R
Sbjct: 11  RGYSDLTIKSYDESITEALKSIEFVQDKNHILLNLMPYRIKISTL--NPKTISKKLSAIR 68

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201
               +    E   +      +  K      +P +   +   ++        R+       
Sbjct: 69  SFADYLNDNEISVM--LKGDDSIKVAKTLPKPIS--HVNIIEAINLASLDERVVVTLFYT 124

Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG----FMKLLAMTPIGKETFFI 257
            GLR S+     ++++ +    +   K      V L +       + L+ +P  K  F  
Sbjct: 125 LGLRISELASLELKNVSDEWVRVI-GKGSKQRDVPLLEQSKKVLDEYLSKSPHKKFVF-- 181

Query: 258 NNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVD 317
             + +K++             + G+  S H +R   A+   +  A   ++    G  ++ 
Sbjct: 182 EKNGEKLSENSLRYIITKVFRRVGLKVSPHQLRHSFASQLLNGNAPIADVSELLGHSSMA 241

Query: 318 QAETYTK 324
             + YTK
Sbjct: 242 TTQIYTK 248


>gi|307565729|ref|ZP_07628198.1| phage integrase, N-terminal SAM domain protein [Prevotella amnii
           CRIS 21A-A]
 gi|307345555|gb|EFN90923.1| phage integrase, N-terminal SAM domain protein [Prevotella amnii
           CRIS 21A-A]
          Length = 292

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 44/261 (16%), Positives = 94/261 (36%), Gaps = 21/261 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSG---VESRKHTPSSAIQFL 137
              ++ +  S+    +         D     + I +  IR+    +   K   SS  + L
Sbjct: 15  KGYSLKTIESYREDLNGFELFYKSCDEQLTLKSIDSDVIRNWVEYMMDNKAAVSSVNRRL 74

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ-----P 192
           +++R L+++ ++  +V  +P   V  PK++        + +M         G        
Sbjct: 75  SALRSLYRYLLKHRFVEKDPVHGVRGPKKQKPLPVFVKESEMDCLLRKEMWGGVYNDVLA 134

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLL------ 245
           R     L  +G+R S+     +  +     ++K T K      + +     + L      
Sbjct: 135 RAIIMMLYETGMRLSEITGLDMSSVDFYTCTVKVTGKRNKQRIIPIGQELEEELKSYLKK 194

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGAT 303
            ++  G++ FF+     ++NA Q     K   +K      ++ H +R   AT   +  A 
Sbjct: 195 RVSVEGEKAFFVTEKGIRVNANQVRYLVKKNLSKVSTLKKRTPHVLRHSFATAMLNHKAG 254

Query: 304 AHELMATYGWKTVDQAETYTK 324
              +    G +++   E YT 
Sbjct: 255 LESVRKLLGHESLATTEVYTH 275


>gi|291457408|ref|ZP_06596798.1| integrase/recombinase, phage integrase family [Bifidobacterium
           breve DSM 20213]
 gi|322691668|ref|YP_004221238.1| phage integrase [Bifidobacterium longum subsp. longum JCM 1217]
 gi|291381243|gb|EFE88761.1| integrase/recombinase, phage integrase family [Bifidobacterium
           breve DSM 20213]
 gi|320456524|dbj|BAJ67146.1| phage integrase [Bifidobacterium longum subsp. longum JCM 1217]
          Length = 319

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 36/289 (12%), Positives = 92/289 (31%), Gaps = 15/289 (5%)

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
           P ++ +  + L++ +  +      +  +   +ES    + +        +I +  +R  +
Sbjct: 34  PTQETSAPQNLLTLFLTAKEVEGCSPKTIAYYESTLQHMTQALA-KPCTRINSDDLREYL 92

Query: 124 ESRKHTPSS----AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
              ++   +           M   F W   ++Y+  +P   + R K         + E++
Sbjct: 93  NRYENERHAGKVTIDNIRRIMSSFFAWLEDEDYIVKSPVRRIHRVKTAVMAKEVLSDENL 152

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELP 238
           +  +       +     + L  +G+R  +     +  +       + T K      V   
Sbjct: 153 ETLRDRCGT-LRDLAIVDILASTGMRVGELVGLNIADVNLQERECLVTGKGNKQRPVYFD 211

Query: 239 DG----FMKLLAMTPIGKETFF--INNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRK 291
                     L          F  +N D  +++        +     AG+++   H  R+
Sbjct: 212 ARTKLHLTAYLQSRNDSNPALFVALNGDGDRISIGGIESRLRQLGKDAGIHRVHPHKFRR 271

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
             AT + D G    ++    G   +D    Y    ++  +   + R + 
Sbjct: 272 TLATHAIDKGMPIEQVQKLLGHARIDTTMHYV-MVNQNNVKASHRRYLE 319


>gi|85373645|ref|YP_457707.1| site-specific recombinase, phage integrase family protein
           [Erythrobacter litoralis HTCC2594]
 gi|84786728|gb|ABC62910.1| site-specific recombinase, phage integrase family protein
           [Erythrobacter litoralis HTCC2594]
          Length = 390

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 58/325 (17%), Positives = 107/325 (32%), Gaps = 20/325 (6%)

Query: 19  GKIIYYFR---KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR---KKPTTLK 72
           G   ++ R   +G  RRI L    E     A   A              R   K   T+ 
Sbjct: 48  GNYFWFVRLRHRGKHRRITLGRTDELEAGLARAQARRILAETALDGLPKRAVVKATPTMT 107

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES-RKHTPS 131
             +  Y            ++ +++++   I    GD     I    I    +     +  
Sbjct: 108 DFVEAYWDDLSRVWKPSTTKRNWDAWRLDIKPTFGDTRVADILPADIHRWRDGCAGESEV 167

Query: 132 SAIQFLTSMRVLFKWAVRQEYV--AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
              + +  +  L K+A   +      NPC  + R KR++   R  T  + ++  +   E 
Sbjct: 168 KFNRAVPVLSALLKYAEALKMRRPGSNPCRGMPRYKRQSVE-RYLTPAEYRRIGAALREA 226

Query: 190 SQPRLA----FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
              R A       LL++G R  +      + ++     +   KTG  + + L      +L
Sbjct: 227 EADRPAEVAIARLLLFTGARVGEIKNLRWEWVKPPRLLLPDSKTGPKV-IWLNSQAQDVL 285

Query: 246 AMTPI--GKETFFINNDK-QKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGA 302
           A+       E  F N    + +N  Q+   F+ +   A  +   H +R   A+ +     
Sbjct: 286 AVIERREDSELVFPNKTGKRPVNFDQWWFVFRRRC--ALPDVRIHDLRHSFASTAIMENV 343

Query: 303 TAHELMATYGWKTVDQAETYTKGAD 327
               +    G K V+    Y   +D
Sbjct: 344 PLSTIGKLLGHKLVETTAKYAHLSD 368


>gi|28867763|ref|NP_790382.1| site-specific recombinase, phage integrase family [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|28850998|gb|AAO54077.1| site-specific recombinase, phage integrase family [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 413

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 51/289 (17%), Positives = 99/289 (34%), Gaps = 26/289 (8%)

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119
           YI     +  TL+  +  Y  S    +    ++    S   ++I   G +    ++   I
Sbjct: 97  YIQRSGSERMTLEAALKRYL-SDITPTKKPTTQRGETSKAKKLIEHLGKYSLAALSADII 155

Query: 120 RSGVESRKHTPS-----SAIQF---LTSMRVLFKWAVRQEY---VAINPCLSVERPKRKT 168
               + R + PS     S       L  +  L+  A+ QE+   +  NP L++ +P    
Sbjct: 156 AGYRDKRLNEPSRGGTISNNTVRLELALLSHLYTVAI-QEWGLGLTFNPVLNIRKPSPGD 214

Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQN--NIFSI 224
              R  + E+ +   +  +  S P L       L +G+R S+        +     +  +
Sbjct: 215 GRDRRLSPEEERLLLAAVNRHSNPMLGWIVCIALETGMRSSEISSLRRPQVDLAKRVIRL 274

Query: 225 KTQKTGTIITVELPDGFMKLLAMT------PIGKETFFINNDKQ--KMNATQFSIWFKAK 276
              K     TV L     ++          PI     F     +  K     F+  +   
Sbjct: 275 SDTKNDGSRTVPLSKRATEVFKAAMDNPVRPIDCNLVFFGEPGKDGKRRPYTFTKIWGQL 334

Query: 277 ATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             K  + +   H +R  + +   + G +  E+ A  G K++   + YT 
Sbjct: 335 KKKLDLPDFRFHDLRHEAVSRLVEGGLSDQEVSAISGHKSMQMLKRYTH 383


>gi|325963702|ref|YP_004241608.1| tyrosine recombinase XerC subunit [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323469789|gb|ADX73474.1| tyrosine recombinase XerC subunit [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 308

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 43/306 (14%), Positives = 100/306 (32%), Gaps = 31/306 (10%)

Query: 59  EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKIT 115
           E    P +    L    + Y   A   +++ ++   +      ++  +   G      + 
Sbjct: 2   ENPELPVELAGALDAF-ARYL--AAERAVSPHTLRGYVGDVRGLLSHASIEGAKRLEDLE 58

Query: 116 TKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
               R  + ++       ++  +   S+RV   WA+ +E +  +P L ++ PKR+     
Sbjct: 59  LGTFRRWLGAQSQAGAARTTLARRSASVRVFTAWALGEERIVADPALRLKAPKREASLPG 118

Query: 173 PWTKEDMQQFKSF--------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
                 + +  +              + R   E L  +G+R  +     +  L  +  ++
Sbjct: 119 VLHSGQLARLLAGLAQAAEEGAPLALRNRAIVELLYATGVRVGELAGLDIDDLDPDRRTL 178

Query: 225 KTQKTGT---------IITVELPDGFMKL--LAMTPIGKETFFINNDKQKMNATQFSIWF 273
           +    G             + + D   +   L       +  F+     +++  Q     
Sbjct: 179 RVIGKGNKERTVPYGVPAALAVDDWLRRGRPLVARSTSGQALFLGMRGGRVDQRQVRTMV 238

Query: 274 KAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330
                + G   +   H +R  +AT   D GA    +    G  ++   + YT    DR+R
Sbjct: 239 NGLFKELGDTSASGPHALRHSAATHLLDGGADLRAVQEILGHSSLATTQIYTHVSVDRLR 298

Query: 331 LGIKNS 336
              + +
Sbjct: 299 KSYQQA 304


>gi|209883237|ref|YP_002287094.1| tyrosine recombinase XerD [Oligotropha carboxidovorans OM5]
 gi|209871433|gb|ACI91229.1| tyrosine recombinase XerD [Oligotropha carboxidovorans OM5]
          Length = 316

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 49/278 (17%), Positives = 94/278 (33%), Gaps = 37/278 (13%)

Query: 89  VNSRISFESYFDQIIR--KSGDFDYRKITTKHIR---SGVESRKHTPSSAIQFLTSMRVL 143
            N+  ++ S  + +         D+ +  T+ +R   + ++ R    SS  + L+S R L
Sbjct: 25  DNTLNAYRSDLEDLSAFLAHAKTDFARADTQALRDYLADLDRRGFKSSSVARRLSSTRHL 84

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP----------- 192
           F++ + +   + +P   +  PKR     +  +  D+ +      E +             
Sbjct: 85  FRFLLNERKRSDDPAAILAGPKRGRPLPKVLSIADVDRLLGKAREFADQEQAPLQKLRAM 144

Query: 193 RLA--FEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELP----DGFMKLL 245
           RL    E L  +GLR S+     +   + +    +   K      V L     +     L
Sbjct: 145 RLWCLLEVLYATGLRVSELVALPLSAAKRDARMIVVRGKGDKERLVPLNQSSREAMTAYL 204

Query: 246 AMT-----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRK 291
           A T           P  K  F  + +   +    F+   K  A  A ++    S H +R 
Sbjct: 205 AATEAAKTDKTKSEPRSKWLFPSSGESGHLTRQHFARDLKELAMAAAISPRLISPHVLRH 264

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             A+     GA    +    G   +   + YT   +  
Sbjct: 265 AFASHLLHNGADLRIVQTLLGHTDISTTQIYTHVVEER 302


>gi|322691408|ref|YP_004220978.1| tyrosine recombinase [Bifidobacterium longum subsp. longum JCM
           1217]
 gi|320456264|dbj|BAJ66886.1| tyrosine recombinase [Bifidobacterium longum subsp. longum JCM
           1217]
          Length = 357

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 54/329 (16%), Positives = 97/329 (29%), Gaps = 82/329 (24%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGV--ESRKHTP 130
             Y KS     L+ N+  ++ +       +    G  D  +IT   +RS +  ESR H  
Sbjct: 14  VSYLKSNR--GLSANTLKAYRADLTACLHLFELRGVTDLNEITLDDLRSWMAVESRDHAR 71

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK------- 183
           SS  +   ++R  F WA        +P  ++  P   +      T+   +Q         
Sbjct: 72  SSMARKTVAVRGFFAWAYEHGVTNTDPAATLMTPSIPSTLPAVLTESQAEQLLDVAEQAV 131

Query: 184 ----------------------------------------SFWSEGSQPRLAFE------ 197
                                                   +   +    R+  E      
Sbjct: 132 ATNQYKGDGGAAAASGSGSGKAVGKTADKSADTVNRNEAPARADKRDSARVVAESQRNAA 191

Query: 198 ---FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV------------ELPDGFM 242
               L  +G+R ++     +  +  +  +IK    G    V               +   
Sbjct: 192 ILELLYATGIRVAELVSMNIADIDFSTRTIKVTGKGNKQRVVPFGLPAQRALETWLEQGR 251

Query: 243 KLLAMTPIG------KETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSAT 295
            +LA T             F+     +++           A +AGV + S H +R  +AT
Sbjct: 252 PVLARTATDAVKSRAANALFLGARGGRIDQRIARDIVHRAAREAGVPDISPHALRHSAAT 311

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTK 324
              D GA   E+    G  ++   + YT 
Sbjct: 312 HMLDGGADLREVQEMLGHSSLKTTQRYTH 340


>gi|119475308|ref|ZP_01615661.1| tyrosine recombinase [marine gamma proteobacterium HTCC2143]
 gi|119451511|gb|EAW32744.1| tyrosine recombinase [marine gamma proteobacterium HTCC2143]
          Length = 312

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 38/274 (13%), Positives = 88/274 (32%), Gaps = 21/274 (7%)

Query: 71  LKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRK------SGDFDYRKITTKHIRSGV 123
            +  I  +         L+ ++  ++    ++                     +   + +
Sbjct: 13  WQTAIDSFLTYQEVARQLSPHTLSNYRRDLEKFADYCRHRAIVDHHHAHNSDVRQWIALL 72

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
                + +S  + L+S+R  +K++ +Q     NP + ++ P+ +    +    + MQQF 
Sbjct: 73  HRNGLSGTSLSRSLSSLRSFYKYSNKQG-GDHNPAIGIKAPRGEKRLPKTLDIDSMQQFL 131

Query: 184 SFWSEG---SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPD 239
           S   +     + R   E    SGLR S+      +     N   I T K     T+ +  
Sbjct: 132 SIDGDDWLTVRDRAILELFYSSGLRLSELVDMDTEDFDLQNGLIIVTGKGRKTRTLPVGS 191

Query: 240 GFMKLLAM-------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVR 290
             +  L                 F++    ++         K  + + G+ +    H +R
Sbjct: 192 HAIAALKNWFSVRSDAHPINNAAFVSAKGTRLGQRGIQQRLKKYSLQQGLGQKIHPHMLR 251

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              A+   ++      +    G   +   + YT 
Sbjct: 252 HSFASHMLESSGDLRAVQELLGHANITTTQVYTH 285


>gi|258622064|ref|ZP_05717091.1| phage integrase family protein [Vibrio mimicus VM573]
 gi|258585678|gb|EEW10400.1| phage integrase family protein [Vibrio mimicus VM573]
          Length = 402

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 43/250 (17%), Positives = 86/250 (34%), Gaps = 15/250 (6%)

Query: 101 QIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158
               K G      I  + I+  ++       P++  +  + +  +F+ A+   YV  NP 
Sbjct: 141 HFYSKWGKKPLTDIGQQDIQKLLDGLLEGRKPATVNRLRSLVLRMFRLAMEWGYVDSNPG 200

Query: 159 LSVERPKRKTEGIRPWTKEDMQQFKSFWSE--GSQPRLAFEFLLYSGLRCSDSCRAGVQH 216
             + + K      R  ++ ++  F    +E        A +F L +G+R  +   +  + 
Sbjct: 201 QYIRKLKENNVRQRFLSRAEVSSFIKACNEEPNRTQSNALKFALLTGMRIGEITSSKWEC 260

Query: 217 L----QNNI-FSIKTQKTGTIITVELPDGFMKLL---AMTPIGKETFFINNDKQKMNATQ 268
           L      N    +   K+G   TV L     +++         K  +    D        
Sbjct: 261 LTVDDDGNWSLFLPHTKSGLSRTVLLNHLAKEVINDQRRFQQLKNPYIFAGDAPGRPIAH 320

Query: 269 FSIWFKAKATKAGV--NKSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKG 325
               F      AG+  N   H +R   A+I  ++G AT +++    G ++   +  Y   
Sbjct: 321 PKKAFARIKKAAGITDNFRIHDLRHSFASILINSGNATLYDVQHLLGHQSPQTSTRYAHL 380

Query: 326 ADRIRLGIKN 335
           A      +  
Sbjct: 381 ASSRLREVSA 390


>gi|21241407|ref|NP_640989.1| site-specific tyrosine recombinase XerC [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|34222918|sp|Q8PPP9|XERC_XANAC RecName: Full=Tyrosine recombinase xerC
 gi|21106742|gb|AAM35525.1| site-specific recombinase [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 305

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 72/219 (32%), Gaps = 11/219 (5%)

Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
           +   +    R  +  S  + L++ R  + W +++  ++ +P  ++  PK   +  +    
Sbjct: 63  RQFVAAEHRRGLSAKSLQRRLSACRSYYAWLLKRGRISASPAAALRAPKAPRKLPQVLDA 122

Query: 177 EDMQQFKSF---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTI 232
           ++  +          G + R   E    SGLR S+ C    + L  ++   +   K    
Sbjct: 123 DEAVRLVEVPTDAPLGLRDRALLEVFYSSGLRLSELCALRWRDLDLDSGLVMVLGKGSKQ 182

Query: 233 ITVELPDGFMKLLA-----MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKS 285
             V +    +  L               F       ++     I  K  A + G+  +  
Sbjct: 183 RLVPVGSHAIAALREWRRDSGASADSHVFPGRAGGAISQRAVQIRIKQLAVRQGMFKDVH 242

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            H +R   A+   ++      +    G   +   + YT 
Sbjct: 243 PHMLRHSFASHILESSGDLRGVQELLGHSDIATTQIYTH 281


>gi|23014819|ref|ZP_00054617.1| COG0582: Integrase [Magnetospirillum magnetotacticum MS-1]
          Length = 314

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 54/281 (19%), Positives = 94/281 (33%), Gaps = 23/281 (8%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESR---K 127
           +WL SE R SAH          +F ++  + +  +        +     R+ +  R    
Sbjct: 23  QWLGSEKRASAHTLDGYGRDLAAFLTFLTEHLAAEPDLAALAALGPGDFRAFLARRTQDG 82

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPC-LSVERPKRKTEGIRPW-TKEDMQQFKSF 185
              SS  + ++++R  FK+  R   V  NP   +V+ P+      +P    E ++   S 
Sbjct: 83  LGRSSLARLMSTLRGFFKFLDRHGLV-HNPAIKAVKSPRPPKSIPKPLAPDEALEALSSA 141

Query: 186 WSEGSQPRLA------FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP- 238
                +P LA      F  L  +GLR  ++     + L      + T K      V +  
Sbjct: 142 GELHDEPWLAARDVALFSLLYGAGLRLGEALSLLRRDLPKGDTMVITGKGNKQRVVPVLP 201

Query: 239 ---DGFMKLLAMTP---IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVR 290
              D     L   P      +  F+      +N        +      G+    + H +R
Sbjct: 202 VVRDAIADYLKRLPFPSESTDPVFLGARGGPLNPGVVQRQMRRLRQVMGLPDTATPHALR 261

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
              AT     G     +    G  ++   + YT   D  RL
Sbjct: 262 HSFATHLLAGGGDLRTIQELLGHSSLSTTQRYT-EVDAARL 301


>gi|254445051|ref|ZP_05058527.1| site-specific recombinase, phage integrase family protein
           [Verrucomicrobiae bacterium DG1235]
 gi|198259359|gb|EDY83667.1| site-specific recombinase, phage integrase family protein
           [Verrucomicrobiae bacterium DG1235]
          Length = 307

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 42/269 (15%), Positives = 94/269 (34%), Gaps = 30/269 (11%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYR---KITTKHIRSGVE-----SRKHTPSSAIQF 136
             L+  +  ++E+  +   +   D D +    +    +R   +      R+ +  +   +
Sbjct: 23  RRLSAYTVRNYEAALETFFQFL-DTDSKWGGNLGKVSLREARDFVIEQQRRVSRRTLHNY 81

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS------ 190
           ++ +R  FK+ +RQ  +  NP + +  PK   +     T++ ++                
Sbjct: 82  VSGLRTFFKYWIRQGKLEANPLVGLVLPKLPKKLPAFMTQKQVKLLLDGPMLLLENESIT 141

Query: 191 -----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGT-------IITVEL 237
                + RL  E L  +G R S+ C      +  +   +    K G         + + +
Sbjct: 142 AFQAWRDRLVLELLYGAGFRVSELCGLTYGQVSFDEGVARIVGKGGKSRICPLGRVAMAV 201

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSAT 295
            D + +  A+     +   ++N + K       +  K     A +  + + H +R   AT
Sbjct: 202 LDKWRREFAVGTAFADPVVLSNRRVKWTPRGVQLLLKKYLALADLPMDLTPHKIRHSYAT 261

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTK 324
              D GA    +    G   +   + YT 
Sbjct: 262 HLLDNGADLRLVQELLGHAKLSTTQIYTH 290


>gi|120609495|ref|YP_969173.1| phage integrase family protein [Acidovorax citrulli AAC00-1]
 gi|120587959|gb|ABM31399.1| phage integrase family protein [Acidovorax citrulli AAC00-1]
          Length = 326

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 42/289 (14%), Positives = 79/289 (27%), Gaps = 39/289 (13%)

Query: 75  ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESR---KH 128
           +  Y +       LA  +   +     ++   + D      ++ T HIR  V        
Sbjct: 15  VLRYLEHVRVEKRLAERTVTLYTLDLAKLAASARDAGVPLLQLQTAHIRRFVAQMHAGGR 74

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS- 187
           +       L+  R  F WA RQ  V  NP   V  P+      +    +D  +   F   
Sbjct: 75  SGRGIALILSGWRGFFAWAARQGLVPHNPVQGVRAPRAPKPLPKALGVDDAVRLAEFEGS 134

Query: 188 ------EGSQPRLAFEFLLYSGLRCSDSCRA----GVQHLQNNIFSIKTQ--------KT 229
                   ++     E L   GLR  +        G    +     I  +        K 
Sbjct: 135 SGSDPWLEARDAAMVELLYGCGLRVGELAGLDAVPGPDTQRQGRGWIDLEAAEAHVFGKG 194

Query: 230 GTIITVELPD------------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKA 277
               +V +                    A +       F+     ++         + ++
Sbjct: 195 SKRRSVPVGSAALAALRAWLEVRLQPFGAASGRVDAALFLGRRGARLTGQSIWSRLRQRS 254

Query: 278 TKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             AG+      H +R   A+    +      +    G   +   + YT+
Sbjct: 255 QLAGLSTPVHPHMLRHSFASHLLQSSGDLRAVQELLGHANITTTQVYTR 303


>gi|299148759|ref|ZP_07041821.1| integrase/recombinase [Bacteroides sp. 3_1_23]
 gi|301311646|ref|ZP_07217572.1| integrase/recombinase [Bacteroides sp. 20_3]
 gi|15072728|emb|CAC47935.1| TpnF protein [Bacteroides thetaiotaomicron]
 gi|298513520|gb|EFI37407.1| integrase/recombinase [Bacteroides sp. 3_1_23]
 gi|300830387|gb|EFK61031.1| integrase/recombinase [Bacteroides sp. 20_3]
          Length = 279

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 44/256 (17%), Positives = 91/256 (35%), Gaps = 19/256 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFD-YRKITTKHIRSGVESR----KHTPSSAIQFLTS 139
              A N+  S++ Y    ++    +    +I    I + +  +    K + S     + +
Sbjct: 17  QRYAGNTIRSYKDYASIFLKHVSKYPSLEEIPLSDIEAFINEKVQNGKISVSYQKGLVGA 76

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRK-TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEF 198
           ++ +++  + ++       L    PKR  ++  + ++KE+++      ++  + +     
Sbjct: 77  IKKMYELILDKKIQ-----LDYLYPKRSFSKLPKFFSKEEVRNILDN-TQNLKHKAILMT 130

Query: 199 LLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAM---TPIGKE 253
           +   GLR S+     ++ ++  + I  I   K      V LPD  +  L         KE
Sbjct: 131 IYSCGLRLSELLNLKIKDIKSSDGIIRIHQSKGNKDRIVSLPDKLLATLRHYYQAFKPKE 190

Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATY 311
             F      K +     +  K    KA V    S H  R   AT    +G     +    
Sbjct: 191 YLFEGEKGGKYSERSVQLILKKALIKANVQSEGSVHTGRHSYATHLIQSGIDIRIVKELL 250

Query: 312 GWKTVDQAETYTKGAD 327
           G + +     YT   D
Sbjct: 251 GHENIKTTMIYTHITD 266


>gi|325953868|ref|YP_004237528.1| integrase [Weeksella virosa DSM 16922]
 gi|323436486|gb|ADX66950.1| integrase family protein [Weeksella virosa DSM 16922]
          Length = 388

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 46/291 (15%), Positives = 96/291 (32%), Gaps = 36/291 (12%)

Query: 85  GSLAVNSRISF----ESYFDQIIR-KSGDFDYRKITTKHIRSGVESRKHTP----SSAIQ 135
             L   S   +        D +IR K      + I   HI++ +E  K +      +  +
Sbjct: 97  QRLKPKSYSDYLCTNRFILDAVIRLKYDKLSIQSIERYHIKTIMEDIKISRKWSNHAYNK 156

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195
            L  ++ +    V  + +  NP   +   K +T      T ++  +        +   L 
Sbjct: 157 NLGYLKSILSELVEFDIIKTNPAHGIRLLKYETSPTSFPTDQEQTKIIQHLYARNFTYLR 216

Query: 196 FEFLLY-SGLRCSDSCRAGVQHLQNNI----FSIKTQKTGTIITVELPDGFMKLLA--MT 248
           F   LY +G+R ++  R  V  +  +           KT     V +     K L   ++
Sbjct: 217 FVKALYQTGMRPAELLRLKVGDVDLDRDLILLKSDDGKTNKYRLVPIKSDLKKDLLTIIS 276

Query: 249 PIGKETFFI----NNDKQK------MNATQFSI--------WFKAKATKAGVNKSAHGVR 290
           P      ++         K       +  ++ I        W K    + G+NK+ + ++
Sbjct: 277 PTHGPDLYLFGTPRKHGGKLDYSEMFSPNKYKIKRDTVTKYWKKYIKDELGINKNLYSLK 336

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
             +A      G     + A +G       E Y    + +R   + ++++  
Sbjct: 337 HKAANDMMFDGLDIETIQAIFGHSKAKTTEIYANQINLLR--FEKAKKLER 385


>gi|319936293|ref|ZP_08010711.1| integrase/recombinase XerC [Coprobacillus sp. 29_1]
 gi|319808669|gb|EFW05213.1| integrase/recombinase XerC [Coprobacillus sp. 29_1]
          Length = 365

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 52/306 (16%), Positives = 103/306 (33%), Gaps = 29/306 (9%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR-- 126
           T    I  Y        L +N+ +  ++  + +I     DF   +IT  HI         
Sbjct: 57  TFDDFIEVYFDDKK-QRLKLNTFLMKQNVINTKIRPYFKDFKMCEITPNHILKWQNDMMK 115

Query: 127 -------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE-GIRPWTKED 178
                  K+T S+       +  +F  AV+   +  NP   V     + E  +  WT E+
Sbjct: 116 QHHKKGEKYTSSTLKTMHAQLSAIFNHAVKYYRLDKNPARIVGTMGSEDEIEMLFWTTEE 175

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK---------- 228
            ++F     +     +AFE L ++G+R  +     ++ +  +   ++  K          
Sbjct: 176 YKKFAFEIMDNPISYMAFEMLYWTGIREGELLALTLEDIDFDKCKLRINKSYQRLQGEDV 235

Query: 229 ------TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
                 + +   V++PD  +  +     G       +    +N +      K     A V
Sbjct: 236 ITTPKTSKSNRVVDIPDFLVDEVKDYVAGLPGLKKTDRMFPINKSFLYREMKRGCKAADV 295

Query: 283 NK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
            K   H +R    ++  + G +A  +    G +++     Y          I N+     
Sbjct: 296 KKIRVHDLRHSHVSLLIEKGFSALAIADRVGHESIHITYKYAHLFPSKGKEIANTLNEEK 355

Query: 342 VVDSDD 347
             D D+
Sbjct: 356 ERDYDE 361


>gi|149370706|ref|ZP_01890395.1| tyrosine type site-specific recombinase [unidentified eubacterium
           SCB49]
 gi|149356257|gb|EDM44814.1| tyrosine type site-specific recombinase [unidentified eubacterium
           SCB49]
          Length = 284

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 40/269 (14%), Positives = 88/269 (32%), Gaps = 11/269 (4%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS-SA 133
           + +++K      L+ N+ +++ +     +         ++  + +R            S 
Sbjct: 14  LIQFKKWMEEQRLSHNTIMTYSNAVSLFLNYIVKHGTTEMNEEWVRRFNYDYIIKNRFSI 73

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
                 +  + K+   +         + ERP +        +K+++++         + +
Sbjct: 74  SYQNQCISGVKKYLEFRGLAVT--LENYERPDKGKTLPAVLSKQEVKRLLDGIK-NLKHK 130

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLA---MT 248
                +  SGLR  ++       +     +  I+  K      V L    ++ L      
Sbjct: 131 TLLSLVYSSGLRIGEALSLRPTAIDSTRKLIFIEGAKGKKDRYVLLSSKLLEDLRKYYTV 190

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHE 306
              K   F        +A+     FK+ A +AG+ K    H +R   AT   + G     
Sbjct: 191 YRPKTYLFEGRSGTMYSASSARAVFKSAAKRAGITKEVRLHTLRHSFATHLLENGTDLRY 250

Query: 307 LMATYGWKTVDQAETYTKGADRIRLGIKN 335
           +    G ++      YT  + R    IKN
Sbjct: 251 IQQLLGHQSPKTTMIYTHVSTRSLQNIKN 279


>gi|317126229|ref|YP_004100341.1| integrase [Intrasporangium calvum DSM 43043]
 gi|315590317|gb|ADU49614.1| integrase family protein [Intrasporangium calvum DSM 43043]
          Length = 375

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 60/328 (18%), Positives = 102/328 (31%), Gaps = 34/328 (10%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT--TLKWLISEYRKSAHW- 84
            +G+R   P    +             + +RE       +    TLK     Y       
Sbjct: 29  PNGKRQAAPNTFSTRVEAERWLLRVHESLEREEWRDSGAQLGRRTLKDYAESYLTENPNV 88

Query: 85  -GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE---SRKHTPSSAIQFLTSM 140
               A  SR +   +   ++    D     IT   +RS      +     +S  Q    +
Sbjct: 89  GERWAETSRRNMRLHLTPLL----DMPVASITPAVVRSWHAQALAGTGGRTSIAQTYRLL 144

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200
           R +   AV  E +  NPC        + +     +  ++       +   + R A     
Sbjct: 145 RSVLNMAVLDEAIQKNPCQIPRAGTDRPKERPIASPAEVAALIE--AITPRYRAAVALAA 202

Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQKT------------------GTIITVELPDGFM 242
           + GLR  +     V  +     +++  KT                       V +P   +
Sbjct: 203 WCGLRRGELMALRVTDVDLEKATVRVDKTYVELLESRRRFEKEPKSQAGRRVVSIPPHVL 262

Query: 243 KLLAM---TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISAD 299
            L+A    T  G E FF+ +D  +M        F       GVN S H +R    T++A 
Sbjct: 263 PLMAEHLETWAGPEFFFVGHDGTRMAGNALYQAFVRARKVVGVNLSFHDLRHTGQTLAAA 322

Query: 300 AGATAHELMATYGWKTVDQAETYTKGAD 327
            GA+  +L    G  +   A  Y    +
Sbjct: 323 TGASLADLKRRLGHSSTAAALRYMHAVE 350


>gi|311695984|gb|ADP98857.1| phage integrase family protein [marine bacterium HP15]
          Length = 327

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 44/306 (14%), Positives = 90/306 (29%), Gaps = 18/306 (5%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87
              +RIR            + + +     +    N  +    TLK LI  +  +     L
Sbjct: 19  RGSKRIR-KSFDSKAEAKRFETFVMAKRAEGREWNPSKADNRTLKQLIKLWFNAKGVH-L 76

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA---IQFLTSMRVLF 144
               R   +   D +    G+   R +      +    +    +S       L  +  ++
Sbjct: 77  KDGERR--KRCLDTMAEFLGNPIARTVKPTSFLAYRAHKIQKGASKKTLNNHLGYLNAVY 134

Query: 145 KWAVRQEYVA-INPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WSEGSQPRLAFEFLL 200
               R   +   NP  +VE  +     +   T E ++        +S+     L     L
Sbjct: 135 NQLNRLNEIDFDNPIRNVEMIRLDERELSWLTVEQIRHLLKTIEDFSQNPHVHLLTRICL 194

Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINND 260
            +G R  ++    ++H+Q    +    K+G   +V +     + +         F     
Sbjct: 195 ATGARWGEAENLQLRHVQEGKLTFVNTKSGKSRSVPVSKELFEEIRKHLKEHGCF----- 249

Query: 261 KQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
               + + F              ++AH +R   A+     G     L    G   +    
Sbjct: 250 --SFSLSAFRRALDKSGITLPPGQAAHVLRHTFASHFLMNGGDIVTLQKILGHSHISMTL 307

Query: 321 TYTKGA 326
            Y+  A
Sbjct: 308 RYSHLA 313


>gi|319761944|ref|YP_004125881.1| hypothetical protein Alide_1232 [Alicycliphilus denitrificans BC]
 gi|317116505|gb|ADU98993.1| hypothetical protein Alide_1232 [Alicycliphilus denitrificans BC]
          Length = 359

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 52/339 (15%), Positives = 102/339 (30%), Gaps = 44/339 (12%)

Query: 17  RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76
           +HG   Y  R G   R+          +    +AL            P+    T+ + + 
Sbjct: 21  KHGAFYYRHRDGRWERV-----GTDVKVAKERAALYND---------PQGVYGTVAYWLD 66

Query: 77  EYRKS----AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE--SRKHTP 130
           ++          G+L+  +   +      +    G      I  +H+++ ++  ++   P
Sbjct: 67  QFIVDCTARVAAGTLSARTLADYTENIVPLKAYFGAMLPEHIEPQHVQAYLDIGAKAGRP 126

Query: 131 SSAIQFLTSMRVLFKWAVRQEY--VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
             A +    +     W +R     + +NPC+     K   E  R       +  + + + 
Sbjct: 127 VRANREKACLSSCLSWLMRTGRTTLKVNPCMQASGTKGNPESKRERYVTHAEYIEVYEAA 186

Query: 189 GSQPRLAFEFLLYSGLRC-SDSCRAGVQ------HLQNNIFSIKTQKTGTIITVELPDGF 241
           G+Q RL  E    +  R  SD             H    + S    KTG  + + L +  
Sbjct: 187 GTQVRLLMELTYRTLQRPESDLLGWTPAVLARDPHSGARVLSFIQGKTGMRVKIALTERL 246

Query: 242 MKLLAMT----PIGKETFFINNDKQKMNATQFSIWFK-------AKATKAGVNK----SA 286
             L+       P+  +    N   +    +  +                 G+ K      
Sbjct: 247 ESLIHRAMGKVPVISQPLVHNRKGEGYTYSGITAMLTAAIRKVNKAREAKGLPKLESFGF 306

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
             ++   AT    AG    ++    G       E Y K 
Sbjct: 307 RDLKGKGATDMWLAGHPIEQIQLLCGHSDKATTEKYIKA 345


>gi|294636531|ref|ZP_06714898.1| site-specific recombinase, phage integrase family [Edwardsiella
           tarda ATCC 23685]
 gi|291090228|gb|EFE22789.1| site-specific recombinase, phage integrase family [Edwardsiella
           tarda ATCC 23685]
          Length = 378

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 58/335 (17%), Positives = 108/335 (32%), Gaps = 30/335 (8%)

Query: 16  TRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75
            RHG  ++      G  + L Y  +   I     A                +  T+   I
Sbjct: 20  NRHGFFVWRH-PLTGSELPLGYITQREAIRQAREANHYLAALTPSPLPEPHEIPTVSQWI 78

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSA 133
           +EY +      +A N+  +  S    +    G     +I+T+ I   +         ++A
Sbjct: 79  TEYLQRLEQRGVAANTLRARRSQSKTVHAMIGPRYLTQISTRDIAILLHPYILDGRLTAA 138

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK-SFWSEGSQP 192
               + +  LF+ AV   ++  NP      P  + +  R   +  +  ++ +   EG +P
Sbjct: 139 SLMRSFLNALFREAVAAGFIDHNPVAQTRTPPIRVKRRRLSEETLLAVYRLALQGEGKKP 198

Query: 193 RLA--FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGF 241
            LA   E  L +G R  D C    Q ++ N   +   KTG  + +               
Sbjct: 199 WLARGIELALLTGQRREDLCTLRWQDVRENKLWLIQGKTGARLAITTRLHLQLGPYALRL 258

Query: 242 MKLLAMTPIGKET-FFINND--------KQKMNATQFSIWFKAKATKAGV-----NKSAH 287
            ++L        + + +N+            +     S  F     ++G+       S H
Sbjct: 259 SEVLDRCRAQGPSDYLLNSRRPRLHRAPGGPLVPDTLSKGFSRLLDQSGLVHAPHPPSFH 318

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
            +R   A+    A           G K+    E Y
Sbjct: 319 EIR-SLASRMYQAQYGTEFCQHLLGHKSRLMTEKY 352


>gi|160945568|ref|ZP_02092794.1| hypothetical protein FAEPRAM212_03097 [Faecalibacterium prausnitzii
           M21/2]
 gi|313113644|ref|ZP_07799225.1| site-specific recombinase, phage integrase family [Faecalibacterium
           cf. prausnitzii KLE1255]
 gi|158443299|gb|EDP20304.1| hypothetical protein FAEPRAM212_03097 [Faecalibacterium prausnitzii
           M21/2]
 gi|310624012|gb|EFQ07386.1| site-specific recombinase, phage integrase family [Faecalibacterium
           cf. prausnitzii KLE1255]
          Length = 342

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 36/270 (13%), Positives = 86/270 (31%), Gaps = 26/270 (9%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS---MRV 142
           ++A  ++ S++     +           I    I + ++  +    S      +   +  
Sbjct: 61  NIAPTTQESYKYCLKMLKEGFYHRPLTVIRPIDIENFLKGMRRDGRSDSYISKARGMLYQ 120

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIR--PWTKEDMQQFKSFWSEGSQPRLAFEFLL 200
           +F+ A   + V  NP    E+ +      R   +T  ++        +  +  L+   LL
Sbjct: 121 IFQKAEANDLVRRNPVRLAEKMRASGTAKRKEAFTTAEVAHLMKVLPD-DRMGLSIRLLL 179

Query: 201 YSGLRCSDSCRAGVQHL--QNNIFSIKT--------------QKTGTIITVELP-DGFMK 243
            +G+R  +      Q +    ++  I+               +   +I  + +P +    
Sbjct: 180 GTGMRMQELLALEPQFIEEDGSVIHIRQAVKVVKGTVSIGSPKSKDSIRDIPVPLNVRPC 239

Query: 244 LLAMTPIGKETFFIN-NDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
            + +     +  + +       N T F   F+    +AG  +  + H  R    +     
Sbjct: 240 AIKLRDTTDQFIWESPKTGLPCNPTHFRDVFRKSLEEAGDVRLLTPHSCRHTYVSQMQAL 299

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIR 330
           G     + +  G    +  E Y    + IR
Sbjct: 300 GVDIQTIQSIVGHADTEMTEHYLHVQESIR 329


>gi|150010096|ref|YP_001304839.1| site-specific recombinase [Parabacteroides distasonis ATCC 8503]
 gi|149938520|gb|ABR45217.1| site-specific recombinase [Parabacteroides distasonis ATCC 8503]
          Length = 382

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 51/267 (19%), Positives = 93/267 (34%), Gaps = 18/267 (6%)

Query: 95  FESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF-----LTSMRVLFKWAVR 149
             S  + +         + I T  ++  +   +  P     F        + V    AV+
Sbjct: 118 LRSLANHLRDYMPQCLLKDIDTGFVKGFIAHLRKQPYLKSDFTIHGYYRLLNVTLNKAVK 177

Query: 150 QEYVAINPCLSV---ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRC 206
           +  +  NPC S+   E+P + T      T E++++         + + AF F  + GLR 
Sbjct: 178 KGLILSNPCGSLDTDEKPHKPTSLRTYLTLEELKRLIRTDCVCPEVKKAFLFCCFCGLRI 237

Query: 207 SDSCRAGVQHLQNN-----IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK 261
           SD      + +Q          I  +KT   I + L +  +K L       +   +    
Sbjct: 238 SDLTALRWEDMQKEGNDKFRLQIIQRKTKEAIYLPLSEEAIKYLPARENENDNDRLGLIF 297

Query: 262 QKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
              + T      K     AG+     + H  R   AT+S   G   + +    G K +  
Sbjct: 298 HLPSLTIICQVLKGWTLAAGIKNKKVTFHVSRHTFATLSLALGIDLYTVCKLLGHKNIIS 357

Query: 319 AETYTKGADRIRLGIKNSRRISSVVDS 345
            + Y K  D  +   +   R + V+D+
Sbjct: 358 TQVYAKIIDASKR--QAIDRFNGVLDA 382


>gi|258542904|ref|YP_003188337.1| site-specific tyrosine recombinase XerC [Acetobacter pasteurianus
           IFO 3283-01]
 gi|256633982|dbj|BAH99957.1| phage DNA recombinase RipX/XerC [Acetobacter pasteurianus IFO
           3283-01]
 gi|256637042|dbj|BAI03011.1| phage DNA recombinase RipX/XerC [Acetobacter pasteurianus IFO
           3283-03]
 gi|256640094|dbj|BAI06056.1| phage DNA recombinase RipX/XerC [Acetobacter pasteurianus IFO
           3283-07]
 gi|256643151|dbj|BAI09106.1| phage DNA recombinase RipX/XerC [Acetobacter pasteurianus IFO
           3283-22]
 gi|256646206|dbj|BAI12154.1| phage DNA recombinase RipX/XerC [Acetobacter pasteurianus IFO
           3283-26]
 gi|256649258|dbj|BAI15199.1| phage DNA recombinase RipX/XerC [Acetobacter pasteurianus IFO
           3283-32]
 gi|256652245|dbj|BAI18179.1| phage DNA recombinase RipX/XerC [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256655302|dbj|BAI21229.1| phage DNA recombinase RipX/XerC [Acetobacter pasteurianus IFO
           3283-12]
          Length = 315

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 48/268 (17%), Positives = 90/268 (33%), Gaps = 40/268 (14%)

Query: 98  YFDQIIRKSGDFDYRKITTKHIRSGVE---SRKHTP-----------SSAIQFLTSMRVL 143
           + D +    G      I+ +  R+ +    +    P            +  + ++++R  
Sbjct: 42  HLDGLPDMIG---LGLISLRDFRAWLAYEQAEASKPTARKTSSDQATRTRARRVSAVRSF 98

Query: 144 FKWAVRQEYVAINPCLSV-ERPKRKTEGIRPWT-------KEDMQQFKSFWSEGSQPRLA 195
           FK+  R++ V  NP + +   P+ K    RP          ED+        E  +    
Sbjct: 99  FKYLARRQGVE-NPAIQLLSTPRTKKPLPRPLAKDQALAAPEDISDLAHTPMEQQRDAAL 157

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQ----NNIFSIKTQKTGTIITVELPDGFMKLLAM---- 247
           F  L   GLR S++    +  L     +N+  I   K G    V +     + L      
Sbjct: 158 FLLLYGCGLRISEALNLNIADLDVMRSSNVLRI-LGKGGKERLVPVLPVVQQALEAWRTR 216

Query: 248 --TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGAT 303
              P      F+    +++         +     +G+    + H +R   AT   + GA 
Sbjct: 217 HPAPTPDAPLFVGVRGKRLQPAIAQKAMREWRHLSGLPDYVTPHALRHSFATHLMEGGAD 276

Query: 304 AHELMATYGWKTVDQAETYTKGADRIRL 331
              +    G  ++   + YT  AD  RL
Sbjct: 277 LRVIQELLGHASLSTTQRYT-LADEARL 303


>gi|313109025|ref|ZP_07794998.1| integrase [Pseudomonas aeruginosa 39016]
 gi|310881500|gb|EFQ40094.1| integrase [Pseudomonas aeruginosa 39016]
          Length = 399

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 59/325 (18%), Positives = 107/325 (32%), Gaps = 30/325 (9%)

Query: 48  MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKS 106
             A            +  +K  T+  L  ++ +        V+++  ++   D+ II   
Sbjct: 77  WLAEVRRGGDPGGAKAEARKAPTMAELCKKFMEDYSKKRNKVSTQDGYQGVIDRNIIPLL 136

Query: 107 GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA--INPCLSVERP 164
           G      +    I   +E   + P+ A +    +R +F  A    +     NPC  V   
Sbjct: 137 GRKKVHDVKRPDIAGLMEKLAYKPTEANKTFGVLRKMFNLAEVWGFRPDGTNPCRHVPM- 195

Query: 165 KRKTEGIRPWTKEDM----QQFKSFWSEGSQPR---LAFEFLLYSGLRCSDSCRAGVQ-- 215
               +  R    E+M    +Q +   +EG +     LA         R S+ C       
Sbjct: 196 YPPGKETRLIVDEEMVRIFRQLEKLEAEGLENYVIPLAIRLQFEFAARRSEICPLEWSWL 255

Query: 216 HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI--GKETFFI--NNDKQKMN-ATQFS 270
             +N        K G  I+  + +   +LL+  P   G        N+  + +     + 
Sbjct: 256 DFENRRVVWPDSKVGG-ISKPMSEEAYRLLSTAPRLEGCPYVLPSPNDPAKHLTFGEHYG 314

Query: 271 IWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR-- 328
            W +     +  +   HG+R  S T  A++G      M   G KTV     Y    D+  
Sbjct: 315 GWCRTLKAASVPHVGTHGIRHRSTTDIANSGVPTKVGMKLTGHKTVAMFMHYVHTEDKPV 374

Query: 329 ---------IRLGIKNSRRISSVVD 344
                     R  I  +R+++  V 
Sbjct: 375 REAAELVASRRQAITGARQLAEAVA 399


>gi|311064016|ref|YP_003970741.1| integrase/recombinase [Bifidobacterium bifidum PRL2010]
 gi|310866335|gb|ADP35704.1| Integrase/recombinase [Bifidobacterium bifidum PRL2010]
          Length = 334

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 51/300 (17%), Positives = 100/300 (33%), Gaps = 60/300 (20%)

Query: 85  GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGV--ESRKHTPSSAIQFLTS 139
             L+ N+  ++ +   + +      G  D R++TT  +R  +  E+R H  SS  + + S
Sbjct: 18  RGLSDNTVKAYGTDVRECLHALASRGIADLRQVTTDDLRGWMAFETRDHARSSMARKVVS 77

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ------------------ 181
           +R  F WA     +  +P   +  PK         T+   ++                  
Sbjct: 78  VRSFFAWAHEHGRIEADPAAVLMTPKLPDTLPSVLTEAQAERLMDRVDDDASLHAASSQR 137

Query: 182 FKSFWSE--------------------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221
           +++   E                      +     E L  +G+R ++     +  +  + 
Sbjct: 138 YETRHDEMPRLDSAHRGEGMSQRDEVVALRDAAMLELLYATGIRVAELVGLDIGDVDWSH 197

Query: 222 FSIK-TQKTGTIITVELPDGFMKLLA---------------MTPIGKETFFINNDKQKMN 265
            +I+ T K      V   D   K LA                  +     F+    ++++
Sbjct: 198 RTIRVTGKGSKQRVVPFGDPAEKALAGWKEHGRPLILRRAGAGTLDTAALFLGMRGRRID 257

Query: 266 ATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
                      A ++GV + S H +R  +AT   D GA   E+    G  ++   + YT 
Sbjct: 258 QRIVRDVVHRAARESGVPDISPHSLRHSAATHMLDGGADLREVQEMLGHSSLRTTQRYTH 317


>gi|294625642|ref|ZP_06704265.1| tyrosine recombinase [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 11122]
 gi|294666817|ref|ZP_06732050.1| tyrosine recombinase [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
 gi|292600065|gb|EFF44179.1| tyrosine recombinase [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 11122]
 gi|292603401|gb|EFF46819.1| tyrosine recombinase [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
          Length = 305

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 71/219 (32%), Gaps = 11/219 (5%)

Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
           +   +    R  +  S  + L++ R  + W ++   ++ +P  ++  PK   +  +    
Sbjct: 63  RQFVAAEHRRGLSAKSLQRRLSACRSYYAWLLKHGRISASPAAALRAPKAPRKLPQVLDA 122

Query: 177 EDMQQFKSF---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTI 232
           ++  +          G + R   E    SGLR S+ C    + L  ++   +   K    
Sbjct: 123 DEAVRLVEVPTDAPLGLRDRALLEVFYSSGLRLSELCALRWRDLDLDSGLVMVLGKGSKQ 182

Query: 233 ITVELPDGFMKLLA-----MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKS 285
             V +    +  L               F       ++     I  K  A + G+  +  
Sbjct: 183 RLVPVGSHAIAALREWRRDSGASADSHVFPGRAGGAISQRAVQIRIKQLAVRQGMFKDVH 242

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            H +R   A+   ++      +    G   +   + YT 
Sbjct: 243 PHMLRHSFASHILESSGDLRGVQELLGHSDIATTQIYTH 281


>gi|218263976|ref|ZP_03477907.1| hypothetical protein PRABACTJOHN_03597 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222387|gb|EEC95037.1| hypothetical protein PRABACTJOHN_03597 [Parabacteroides johnsonii
           DSM 18315]
          Length = 382

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 61/303 (20%), Positives = 115/303 (37%), Gaps = 42/303 (13%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFES-------YFDQIIRK------------SGDFDYR 112
            WL           S A ++  ++ S       Y   + R+             G  D+ 
Sbjct: 85  DWLADHIEGIRRNPSYAASTYRNYRSTVNVIKAYLQHLRRQRLLMSKIDKGFVLGFIDFI 144

Query: 113 KITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE--- 169
           + T ++ +S    ++ +P +   + +++  +   AV++  +  NP  S+ER  R  +   
Sbjct: 145 EHTYRNTKSPDNPKEMSPHTLHLYQSTLVRMLNAAVKEGVLDRNPFYSLERKDRIGKQQA 204

Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIK 225
                TKE++  F    +     + AF F  ++GLR SD      + ++      + S+K
Sbjct: 205 EKEYLTKEELMAFAEAPTVNETTKRAFLFCCFTGLRYSDVSALTWRDIRQGDNGWMVSVK 264

Query: 226 T-QKTGTIITVELPDGFMKLLA----MTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280
             QKTG  + + L    + LL       P  K  F +         +  +   K  A  A
Sbjct: 265 AMQKTGKQVVIPLNQSAISLLPDRNGCKPSQK-VFDMT------CLSSCNKCLKKIAAAA 317

Query: 281 GVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338
           G+ K  S H  R   A ++  AG   + +    G  +++  + Y       +  ++   R
Sbjct: 318 GIEKKISYHTSRHTFAVLALAAGGDIYTVGKLLGHTSINSTQVYADAVMETK--VEAISR 375

Query: 339 ISS 341
           ISS
Sbjct: 376 ISS 378


>gi|90578175|ref|ZP_01233986.1| hypothetical protein VAS14_14029 [Vibrio angustum S14]
 gi|90441261|gb|EAS66441.1| hypothetical protein VAS14_14029 [Vibrio angustum S14]
          Length = 296

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 44/271 (16%), Positives = 92/271 (33%), Gaps = 18/271 (6%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHT 129
            +L  ++            +  ++     +I  +  D     +TT  ++       + H+
Sbjct: 10  DYLYEQHLIHLTLQGKRPATIDAYSRALRRITHQL-DKSPDTLTTDDLKRYFTQLIKTHS 68

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            S+       ++  FK  +++++  +N    + +P          T  ++    +  S+ 
Sbjct: 69  WSTVKINRNGLQFFFKHVLQRDWEWLN----IVKPPHVKTLPDILTPTEVSLLINATSQ- 123

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFMKLLA- 246
            + ++ F  L   GLR  +     V ++ ++     I+  K G    + LP   +  L  
Sbjct: 124 LRYQVFFLTLYSLGLRLGEGLNLTVGNIDSHRMLVHIRQGKGGKDRFIPLPRRTLYALRY 183

Query: 247 --MTPIGKETFF---INNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISAD 299
              T       F    N +   M+        KA     G+ KS   H +R   AT   +
Sbjct: 184 YWQTHKNSHYLFPSQFNVNHTVMDRGGVQKAMKAVIKSCGITKSISPHNLRHSYATHLLE 243

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIR 330
            G     +    G  +++    YT   D  R
Sbjct: 244 RGLDLRSVQHLLGHNSLNTTAKYTHLTDISR 274


>gi|224540991|ref|ZP_03681530.1| hypothetical protein CATMIT_00142 [Catenibacterium mitsuokai DSM
           15897]
 gi|224526090|gb|EEF95195.1| hypothetical protein CATMIT_00142 [Catenibacterium mitsuokai DSM
           15897]
          Length = 417

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 41/269 (15%), Positives = 87/269 (32%), Gaps = 30/269 (11%)

Query: 85  GSLAVNSRISFESY----FDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSSAIQFLTS 139
             L+ +++  +        D + +K G  D   I        + +    +  +  Q +  
Sbjct: 127 TELSKSTKKHYIRISLIFLDYLNQK-GITDVSYIDLSICNDYIRTFTGMSFKTIEQHICG 185

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPK--RKTEGIRPWTKEDMQQFKSFW----SEGSQPR 193
           +R   ++   +  +  +    +  P   + T+    WT++++++           G +  
Sbjct: 186 LRYFLRYLNEENVLESDVASLIHMPAISKSTKIPSVWTEDEIKKLLQAIDRNSPIGKRDY 245

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFM-KLLAMTPI 250
                    GLR SD       +   +    SI   KT   +T+ +PD     ++     
Sbjct: 246 AMIVLACILGLRISDIKNLKFDNFNWEEKKLSIIQHKTKKPLTLPIPDAVGWAVIDYIKN 305

Query: 251 GKET-----FFINNDKQKMNATQ----FSIWFKAKATKAGV------NKSAHGVRKFSAT 295
           G+       F          +       S        KA +      ++  H +R  SA+
Sbjct: 306 GRPKYYESKFIFLKHMPPFGSLSDENHLSDRIHFYMKKAKIPLNKNCHRGFHSLRHTSAS 365

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTK 324
           +  DAG     + +  G  + D    Y K
Sbjct: 366 MLLDAGVELPVITSILGHSSTDITSIYLK 394


>gi|220931210|ref|YP_002508118.1| phage integrase family protein [Halothermothrix orenii H 168]
 gi|219992520|gb|ACL69123.1| phage integrase family protein [Halothermothrix orenii H 168]
          Length = 391

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 42/301 (13%), Positives = 105/301 (34%), Gaps = 48/301 (15%)

Query: 87  LAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR----------KHTPSSAIQ 135
           LA ++  +++   +  +    G+   + +  + ++  +  +            +P +   
Sbjct: 85  LAYSTYRNYKVMINNHLADDIGETKLKDLKARQVQELLNDKLEKGKVYGEGGLSPRTVKY 144

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG-IRPWTKEDMQQFKSFWSEGSQPRL 194
             +++    + AV++  +  N C +VE PK++ E  +  W K+ +  F     +     L
Sbjct: 145 IYSTLHTALEQAVKENMIPRNICKAVEVPKKQEEKKLHTWNKKQVNIFLKAARDYKYFIL 204

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQ---------------NNIFSIKTQKTGTI-ITVELP 238
            +   L +G+R  +      + +                +     K  KT +   T+ + 
Sbjct: 205 HY-LALNTGMRRGELLGLQWKDIDMEKKRIEVKRQLARTDEGLIFKKVKTKSGNRTIPIT 263

Query: 239 DGFMKLLAMTPIG---------------KETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
           D  ++ L    I                 +    N     ++       FK    + G+ 
Sbjct: 264 DNVVRELKRHQIKQGEKRLALGEAYNKKADLVASNGIGNPIDPRNLVRDFKDIIEETGLP 323

Query: 284 K-SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADRIRLGIKNSRRISS 341
           +   H +R   AT+  +A      L    G  ++    +TY+   +   + I+  R++ +
Sbjct: 324 EIRYHDLRHTFATLFLEAKGPIKTLQQILGHSSITVTIDTYSHVTE--EMLIEAERKMET 381

Query: 342 V 342
           +
Sbjct: 382 M 382


>gi|86141512|ref|ZP_01060058.1| tyrosine type site-specific recombinase [Leeuwenhoekiella
           blandensis MED217]
 gi|295133678|ref|YP_003584354.1| tyrosine type site-specific recombinase [Zunongwangia profunda
           SM-A87]
 gi|85832071|gb|EAQ50526.1| tyrosine type site-specific recombinase [Leeuwenhoekiella
           blandensis MED217]
 gi|294981693|gb|ADF52158.1| tyrosine type site-specific recombinase [Zunongwangia profunda
           SM-A87]
          Length = 388

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 40/274 (14%), Positives = 90/274 (32%), Gaps = 29/274 (10%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT-TKHIRSGVESRKHTPSSAI 134
             Y+   ++ +         + + +        F+   I   K  +  +++   T S+  
Sbjct: 104 ERYQTKGNYDNWDAA-----QKHLENYCPNHISFNEVDIDFIKGFKKYLDTVAVTKSNKN 158

Query: 135 -------QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
                   +    +   + A  + Y+  N    V+            T +++++      
Sbjct: 159 LSQNTKHTYFNKFKAAMRAAFEEGYLKENLIAKVKGFAMGESKREYLTSDELKRLAKTPC 218

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----------IFSIKTQKTGTIITVEL 237
                + AF F   +G+R SD  +     +++               K +KT  +  + +
Sbjct: 219 NIQVFKDAFLFSALTGIRWSDIHKLTWSEVRDEGIDKSDNEIFRIVFKQKKTEGMEYLYI 278

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSAT 295
                +LL      K+  F N       +   ++        AG++K  + H  R  +A 
Sbjct: 279 SKQARRLLGKRSEPKDRVFTNLR----YSAYMNLQLLRWCMAAGISKHITFHSARHTNAV 334

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           +  + GA  + +    G K +   E Y K  D+ 
Sbjct: 335 LLLENGADIYTVSKRLGHKEIRTTEIYAKIIDKK 368


>gi|323138655|ref|ZP_08073722.1| integrase family protein [Methylocystis sp. ATCC 49242]
 gi|322396143|gb|EFX98677.1| integrase family protein [Methylocystis sp. ATCC 49242]
          Length = 420

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 48/260 (18%), Positives = 90/260 (34%), Gaps = 21/260 (8%)

Query: 109 FDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
               +IT   +   ++       P  A + L+ +  L +WAV +  VA NPC  + +P +
Sbjct: 149 RRLSEITRADVHELLDGLIDRGAPVQANRLLSYLNKLCRWAVSRGIVAHNPCDGIGKPSQ 208

Query: 167 KTEGIRPWTKEDMQQF-KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225
           +    R     +++   ++    G         L+ +G R S+   A       +  + +
Sbjct: 209 EKSRDRVLDDHELRLVWRAAGELGWPFAPIIRLLILTGQRKSEVAEATWSEFDLDARAWR 268

Query: 226 ----TQKTGTIITVELPDGFMKLLAMTPI---GKETFFINNDKQKMNATQFSIWFKAKAT 278
                 K   + TV L    + LL   P      +  F    K  ++    +      A 
Sbjct: 269 IPPERVKNKRLHTVPLSPQAVALLKNLPRIQSASDLVFTTTGKTSVSGFSRAKRNIDVAV 328

Query: 279 K---AG---VNKSAHGVRKFSATISADAGATAHELMATYGWKTVD---QAETYTKG--AD 327
           K   AG      + H +R+ +A+  A  GA  H +       +         Y +   AD
Sbjct: 329 KVLNAGTQIPAWTIHDLRRSAASGLAKNGAELHVIERVLNHVSGAFAGVVGVYQRHTFAD 388

Query: 328 RIRLGIKNSRRISSVVDSDD 347
            +R  +    R    + S+ 
Sbjct: 389 EMRAALDAWGRHIEQITSEK 408


>gi|310287153|ref|YP_003938411.1| Integrase/recombinase XerC [Bifidobacterium bifidum S17]
 gi|309251089|gb|ADO52837.1| Integrase/recombinase XerC [Bifidobacterium bifidum S17]
          Length = 334

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 51/300 (17%), Positives = 100/300 (33%), Gaps = 60/300 (20%)

Query: 85  GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGV--ESRKHTPSSAIQFLTS 139
             L+ N+  ++ +   + +      G  D R++TT  +R  +  E+R H  SS  + + S
Sbjct: 18  RGLSDNTVKAYGTDVRECLHALASRGIADLRQVTTDDLRGWMAFETRDHARSSMARKVVS 77

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ------------------ 181
           +R  F WA     +  +P   +  PK         T+   ++                  
Sbjct: 78  VRSFFAWAHEHGRIEADPAAVLMTPKLPDTLPSVLTEAQAERLMDRVDDDASLHAASSQR 137

Query: 182 FKSFWSE--------------------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221
           +++   E                      +     E L  +G+R ++     +  +  + 
Sbjct: 138 YETRHDEMPRLDSAHRGEGMSQRDEVVALRDAAMLELLYATGIRVAELVGLDIGDVDWSH 197

Query: 222 FSIK-TQKTGTIITVELPDGFMKLLA---------------MTPIGKETFFINNDKQKMN 265
            +I+ T K      V   D   K LA                  +     F+    ++++
Sbjct: 198 RTIRVTGKGSKQRVVPFGDPAEKALAGWKEHGRPLILRRAGAGTLDTAALFLGMRGRRID 257

Query: 266 ATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
                      A ++GV + S H +R  +AT   D GA   E+    G  ++   + YT 
Sbjct: 258 QRIVRDVVHRAARESGVPDISPHSLRHSAATHMLDGGADLREVQEMLGHSSLRTTQRYTH 317


>gi|319644101|ref|ZP_07998650.1| hypothetical protein HMPREF9011_04253 [Bacteroides sp. 3_1_40A]
 gi|317384343|gb|EFV65312.1| hypothetical protein HMPREF9011_04253 [Bacteroides sp. 3_1_40A]
          Length = 381

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 44/210 (20%), Positives = 80/210 (38%), Gaps = 19/210 (9%)

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVER--PKRKTEGIRPW-TKEDMQQFKSF---WSE 188
            +  ++      AVR++ +  NP   +E+    RK E +R + T E++Q          E
Sbjct: 165 NYYRALNGALNSAVRKKKMKANPFNELEKSEKIRKPESMRSYMTIEEVQALIDTPMPHEE 224

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT----QKTGTIITVELPDGFMKL 244
               + A+ F  + GLR SD  +     +  +    +     +KT   I + L    +K 
Sbjct: 225 YEIVKCAYLFSCFCGLRISDIIKLKWSDVFVDRGQYRLAVSMKKTKEPIYLPLSPEALKW 284

Query: 245 L--AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
           +        ++  F        +A    +  K  A  AG++K  S H  R   AT+    
Sbjct: 285 MPERGGKSSEDNVFDL-----PSANTIRMQLKPWAKAAGISKRFSYHTSRHTFATMMLTL 339

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIR 330
           GA  + +    G   V   + Y K  ++ +
Sbjct: 340 GADLYTVSKLLGHADVKMTQVYAKIINKKK 369


>gi|315080448|gb|EFT52424.1| site-specific recombinase, phage integrase family
           [Propionibacterium acnes HL078PA1]
          Length = 420

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 58/373 (15%), Positives = 115/373 (30%), Gaps = 51/373 (13%)

Query: 23  YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSA 82
           +Y + G  +R+R      +         L            PR    TL   ++ +  + 
Sbjct: 27  FYDKNGTKQRVRGRGATRAEATKRLNKNLRQRIDGTRTATGPRGGL-TLNQWVNIWLATK 85

Query: 83  HWGS-LAVNSRISFE-SYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA-IQFLTS 139
                +   +    +  Y   I  K G    +++T + I+  + +      +  +    +
Sbjct: 86  QASEQMKPQTAQQHKIRYKQWIAPKLGSRPVKRLTAEEIQEVIAAGAQQGHAIPVNIFKT 145

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEG-------IRPWTK--EDMQQFKSFWSEGS 190
           M      AV+   V +NP   +  P++++         I  W++  + M ++ +      
Sbjct: 146 MNAALNSAVKAGEVDLNPMKQLTPPRQRSAAGEKDTAHIEYWSRIMDKMCKWLAQPECEL 205

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQ---------------KTGTII 233
             R      +  GLR ++             N  +IK Q               KTG   
Sbjct: 206 HDRYTLTIAMLLGLRRAELLGLTWDCFDECMNKLTIKQQLMRQNDGSYIIQNSTKTGKNR 265

Query: 234 TVELPDGFMK---------LLAMTPIGKETFFINNDKQKMNATQFSIWFKA----KATKA 280
           T+ LP+ + +         L A  P      F+      +    ++  ++        K 
Sbjct: 266 TLMLPERWKEAFLLQRQKSLTAAAPEWNNLVFLTPAGGPITYPMYNKLWRNTIVTYMAKE 325

Query: 281 GVNK-------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT-KGADRIRLG 332
           G            H  RK  A+  A  G      M+  G  +      YT   AD+ R  
Sbjct: 326 GQEWKEEQHYWRPHTCRKMCASWLAWGGVDIQTAMSILGHSSEAMTLYYTIINADQQRKA 385

Query: 333 IKNSRRISSVVDS 345
           ++    +    + 
Sbjct: 386 LEGLSNVYEHHNV 398


>gi|301647024|ref|ZP_07246858.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 146-1]
 gi|301074822|gb|EFK89628.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 146-1]
          Length = 401

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 45/274 (16%), Positives = 97/274 (35%), Gaps = 19/274 (6%)

Query: 65  RKKPTTLKWLISEYRKSAHWGS---LAVNSRIS---FESYFDQIIRKSGDFDYRKITTKH 118
           + +  T+   + +Y K+        L    R++        ++ +      D      + 
Sbjct: 33  KIRKMTISRALDKYLKTVSIHKKGHLQEFYRVNVIKRHPIAERYMDDITTVDIANYRDQR 92

Query: 119 IRSG--VESRKHTPSSAIQFLTSMRVLFKWA-VRQEYVAINPCLSVERPKRKTEGIRPWT 175
           +        R+ T ++    L  +  LF  A V      +NP   V +PK  +   R  T
Sbjct: 93  LAQINPRTGRQITGNTVRLELALLSSLFNIARVEWGTCRMNPVELVRKPKISSGRDRRLT 152

Query: 176 KEDMQQFKSFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTGTI 232
             + ++   ++ E +Q   + F   L + +R  +      +H+     +  + T K G  
Sbjct: 153 SGEERRLSRYFKEKNQALYVIFHLALETAMRQGEILSLRWEHVDLQHGVAHLPTTKNGAP 212

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRK 291
             V L       L M P       +N +     ++ F   ++    +  + N   H +R 
Sbjct: 213 RDVPLSRKARNYLQMLPTQ-----LNGNIFSYTSSGFKSAWRTALQELKIENLHFHDLRH 267

Query: 292 FSATISADAG-ATAHELMATYGWKTVDQAETYTK 324
            + +   + G     E+ A  G ++++  + YT 
Sbjct: 268 EAISRFFELGTLNVIEVAAISGHRSLNMLKRYTH 301


>gi|218783046|ref|YP_002434364.1| integrase family protein [Desulfatibacillum alkenivorans AK-01]
 gi|218764430|gb|ACL06896.1| integrase family protein [Desulfatibacillum alkenivorans AK-01]
          Length = 408

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 60/377 (15%), Positives = 106/377 (28%), Gaps = 53/377 (14%)

Query: 16  TRHGKIIYY--FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYI-NSPRKKPTTLK 72
            R  ++ Y+  +R   G++ R           A          +   +     ++  T +
Sbjct: 31  KRSKRVRYWIAYRLPGGKQRREAVGFSIEDARAAEGKRKAEKKENPRVLKKSPEETMTFE 90

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI----------------TT 116
            L   Y        L    R   E          G    + I                  
Sbjct: 91  DLAKWYLALPKVNGLKSFWR--IEMNLKTFNETFGKTKIKNIMAVDLEKFQVDGLAQGFK 148

Query: 117 KHIRSGVESRKHTPSS-------AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
           K  R   E +K   +S         Q LT  R +   A   + V+        R K    
Sbjct: 149 KRTRGSKEEKKEGGASQPASQAYIDQILTVARTMINRAFDSDIVSGETVKVFRRVKNLQG 208

Query: 170 GI-----RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
           G      R  T ++ ++  +     ++P        Y+G+R  +        +      I
Sbjct: 209 GNANARDRVLTHDEFEKIMANLPAHAKP--IIATAYYTGMRSGEIFPLTWDRVDLKERVI 266

Query: 225 KTQ----KTGTIITVELPDGFMKLLAMTPIGKET--FFINNDKQKMNATQFSIWFKAKAT 278
           + +    K      V + +   ++L+  P    T   F+    + +   +     K  A 
Sbjct: 267 RLEAADTKDKEPRVVPICNELYEVLSGLPRAIHTDNVFL-RYGEPI--KKLRNSLKEAAK 323

Query: 279 KAGVNK--------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY-TKGADRI 329
           KAG+          + H  R    T    AG     +M   G  T    + Y T  AD  
Sbjct: 324 KAGIPFGRKVKNGFTFHDFRHTFNTNMRRAGVPESVIMKITGHSTRAMFDRYNTVDADDA 383

Query: 330 RLGIKNSRRISSVVDSD 346
           +  +         VD +
Sbjct: 384 KNAVNIMSSFLQPVDQN 400


>gi|54303359|ref|YP_133352.1| hypothetical protein PBPRB1692 [Photobacterium profundum SS9]
 gi|46916789|emb|CAG23552.1| hypothetical protein PBPRB1692 [Photobacterium profundum SS9]
          Length = 295

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 41/285 (14%), Positives = 90/285 (31%), Gaps = 21/285 (7%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPS 131
           L  ++  +         +  ++     +I +         +TT  ++    S  + H+ S
Sbjct: 12  LYEQHLTNLTLQGKRPATIDAYSRAVRRISQFFDRCP-DAMTTADLKQYFASLIQTHSWS 70

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           +       ++  ++  + +E+  ++    + +P +  +     T + +    S      +
Sbjct: 71  TVKLDRNGLQFFYRHTLEKEWQWLD----IVKPPQSKKLPDIITAQQVALLISMTK--QK 124

Query: 192 PRLAFEFLLYS-GLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFMKLLAM- 247
               F   LY+ GLR  +     V  +  +     I+  K G    V +P   +  L   
Sbjct: 125 RYQIFFLTLYTMGLRLGEGLSLTVHDIDQHTMQVHIRDGKGGKDRLVPVPQRTLNALRAH 184

Query: 248 -TPIGKETFFINNDK----QKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
                                M+        K      G+NK  S H +R   AT   + 
Sbjct: 185 WLTHRHPRLIFPGKGCNTDNPMDRGGVQKAMKLVLKDCGINKPISPHSLRHGFATHLLEQ 244

Query: 301 GATAHELMATYGWKTVDQAETYTKGAD-RIRLGIKNSRRISSVVD 344
           G     L    G  +++    YT+    + R       R++  + 
Sbjct: 245 GLDLRSLQILLGHASLNTTARYTRMTQIKQRDAALAINRLADALT 289


>gi|329729089|gb|EGG65500.1| site-specific recombinase, phage integrase family [Staphylococcus
           epidermidis VCU144]
          Length = 391

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 62/377 (16%), Positives = 129/377 (34%), Gaps = 57/377 (15%)

Query: 23  YYFRKGHGRRI---RLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT--TLKWLISE 77
           + +R   G+     +  Y  ++ F     +       +R+  N     P+  T K +  +
Sbjct: 12  WRYRISLGKNTETGKYEYISKTGFKRKSDAKHQAEMIERQLRNGDYIAPSSSTFKQVAED 71

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA--IQ 135
           + K      + V+S  + E      I+       + I     +  V+      S      
Sbjct: 72  WIKQYA-NDVKVSSVRAREKAIQHAIQHFNTKPIQTIKKHDYQRFVDDMSIQYSKNYVDS 130

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRK--------TEGIRP-WTKEDMQQFKSFW 186
            + S  ++FK+A   + + + P   ++RPK+K        +E  +    K+++ QF    
Sbjct: 131 IVASTNMIFKYAYDMKLIRVLPIEGIKRPKKKVSVEELEDSEIHKKFLEKDELFQFLEVA 190

Query: 187 SEGSQPRLAFEF---LLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ-------------- 227
                P+ +FE    L Y+G+R  +        +   NN  SI                 
Sbjct: 191 KNHHSPQNSFEVFTTLAYTGMRAGELLALKWSDIDFENNTISITKTYYNPNNNKKHYQIL 250

Query: 228 --KTGTII-TVELPDGFMKLLAMTP------------IGKETFFINNDKQKMNATQFSIW 272
             KT + I  + +    ++LL                +     F + +   +   + S W
Sbjct: 251 TPKTESSIGKISVDPHVIQLLKDYKVNVQDTWKNELYVDNNFVFTDVNGYPLVIKKLSTW 310

Query: 273 FKAKATKAGV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADR 328
            +A   K  +   + S H  R     +  +AG    E+      K ++     Y K  + 
Sbjct: 311 IQAIMKKTDITNKHISTHSFRHTHCALLIEAGVHIKEIQERLRHKDINTTMNIYAKITNS 370

Query: 329 IRLGIKNSRRISSVVDS 345
            +     S++ S ++++
Sbjct: 371 YKK--DASQKFSKLMEN 385


>gi|320161829|ref|YP_004175054.1| putative site-specific recombinase [Anaerolinea thermophila UNI-1]
 gi|319995683|dbj|BAJ64454.1| putative site-specific recombinase [Anaerolinea thermophila UNI-1]
          Length = 292

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 40/277 (14%), Positives = 91/277 (32%), Gaps = 32/277 (11%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQII--------RKSGDFDYRKITTKHIRSGVES- 125
           + ++         +  +   + +              +  G  +      +  R  +++ 
Sbjct: 4   LEQFEVWLQEQDRSPVTVRGYMADLRAFAAWFEQTNGKALGVEEVTPADVREYRGWLQAV 63

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT---------EGIRPWTK 176
           ++   ++  + L ++R   +W V  E +  +P   V+ P+ +T         E  R   +
Sbjct: 64  KRAGAATVRRHLMALRAYCRWGVETERIDRDPTARVKLPREETLSPGWLAKQEQYRLLRE 123

Query: 177 EDMQQFKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQK 228
            +     +          + R    FLL +GLR +++C   V+ +    ++    ++  K
Sbjct: 124 AERAVSAADTPTRRRLAVRDRALVVFLLNTGLRIAEACALTVEDVQIGERSGWVVVRGGK 183

Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM--NATQFSIWFKAKATKAGVNKSA 286
                 V L     + L      +     + +        +           +AGV    
Sbjct: 184 GNKSRKVPLNVEVRRALNAWREERG----DGEGSVFDLTPSGAYRRLVEMGRRAGVEVHP 239

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           H +R   A    DAG   HE+ A  G  +++    Y 
Sbjct: 240 HTLRHTLAKNLVDAGVGLHEVAALLGHSSLNTTRVYV 276


>gi|317055405|ref|YP_004103872.1| integrase family protein [Ruminococcus albus 7]
 gi|315447674|gb|ADU21238.1| integrase family protein [Ruminococcus albus 7]
          Length = 396

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 57/317 (17%), Positives = 103/317 (32%), Gaps = 53/317 (16%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGVESRKH---- 128
            ++ +     +L   +   +E       +I    G     KIT + I++ V S       
Sbjct: 74  EQWFEEYAKPNLRNTT---YERMLQLRGRIYPALGHMRMDKITPRQIQAFVNSLSREGAN 130

Query: 129 -------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
                   P +    L+ +  +F +AV+   V  NPC  V  PK      + +T E +Q+
Sbjct: 131 ERTGKPLAPKTIRHNLSFVSDVFSYAVKMGVVNDNPCSKVTLPKNNQAEKKIYTPEQVQR 190

Query: 182 FKSFW-SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKT--------- 229
           F +    E  + R  F  +++SG R  +      + +   +NI SI+             
Sbjct: 191 FLTLLNDEPLKYRTFFNLMIFSGFRRGEMLGLEWKDVDFEHNIISIRRTSNYTGRKGTYT 250

Query: 230 ------GTIITVELPDGFMKLLAMTP--------------IGKETFFINNDKQKMNATQF 269
                  +  T++ P   M +L                  +  +  +   +   M     
Sbjct: 251 DTTKTKKSQRTLKFPQEIMDMLREYKDEQDMQALKCGDKWVETDRLYTKWNGLPMQNGTP 310

Query: 270 SIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGAD 327
             W      K  +     H  R   A++  + G     +    G  TV      Y    D
Sbjct: 311 YFWLGEFCEKHDLPFYGLHSFRHLFASLLVNQGVDIVTVSGALGHSTVSTTSNIYCHMLD 370

Query: 328 RIRLGIKNSRRISSVVD 344
             R   K S  +S+ +D
Sbjct: 371 EAR--AKVSEAVSAALD 385


>gi|295105295|emb|CBL02839.1| Site-specific recombinase XerD [Faecalibacterium prausnitzii SL3/3]
          Length = 341

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 36/270 (13%), Positives = 86/270 (31%), Gaps = 26/270 (9%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS---MRV 142
           ++A  ++ S++     +           I    I + ++  +    S      +   +  
Sbjct: 60  NIAPTTQESYKYCLKMLKEGFYHRPLTVIRPIDIENFLKGMRRDGRSDSYISKARGMLYQ 119

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIR--PWTKEDMQQFKSFWSEGSQPRLAFEFLL 200
           +F+ A   + V  NP    E+ +      R   +T  ++        +  +  L+   LL
Sbjct: 120 IFQKAEANDLVRRNPVRLAEKMRASGTAKRKEAFTTAEVAHLMKVLPD-DRMGLSIRLLL 178

Query: 201 YSGLRCSDSCRAGVQHL--QNNIFSIKT--------------QKTGTIITVELP-DGFMK 243
            +G+R  +      Q +    ++  I+               +   +I  + +P +    
Sbjct: 179 GTGMRMQELLALEPQFIEEDGSVIHIRQAVKVVKGTVSIGSPKSKDSIRDIPVPLNVRPC 238

Query: 244 LLAMTPIGKETFFIN-NDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
            + +     +  + +       N T F   F+    +AG  +  + H  R    +     
Sbjct: 239 AIKLRDTTDQFIWESPKTGLPCNPTHFRDVFRKSLEEAGDVRLLTPHSCRHTYVSQMQAL 298

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIR 330
           G     + +  G    +  E Y    + IR
Sbjct: 299 GVDIQTIQSIVGHADTEMTEHYLHVQESIR 328


>gi|92116109|ref|YP_575838.1| tyrosine recombinase XerD [Nitrobacter hamburgensis X14]
 gi|91799003|gb|ABE61378.1| tyrosine recombinase XerD subunit [Nitrobacter hamburgensis X14]
          Length = 319

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 43/279 (15%), Positives = 86/279 (30%), Gaps = 38/279 (13%)

Query: 89  VNSRISFESYFDQIIR---KSGDFDYRKITT--KHIRSGVESRKHTPSSAIQFLTSMRVL 143
            N+  ++    + +     + G       T   +     ++ R    SS  + L++MR L
Sbjct: 27  DNTLDAYRRDLEDLSAFLTRVGQTFVTAGTQTLRDYLGDLDVRGFKSSSVARRLSAMRHL 86

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW------SEGSQPR---- 193
           F++ + +   + +P   +  PKR     +  +  D+ +  +         + S  R    
Sbjct: 87  FRFLLSERIRSDDPAAILSGPKRGRSLPKVLSIADVDRLLACAKAAMETPDASPARRLRA 146

Query: 194 ----LAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELP--------DG 240
                  E L  +GLR S+     +   + +    +   K      V L         D 
Sbjct: 147 ARLYCLLEVLYATGLRVSELVSLPLSAARRDARMIVVRGKGNKERLVPLNEASRQAMADY 206

Query: 241 FMKLLAMTPIGKET-----FFINNDK--QKMNATQFSIWFKAKATKAGVN---KSAHGVR 290
              +       K       +   +      +    F+   K  A  AG+     S H +R
Sbjct: 207 LAAMADRRGADKAVAVQPKWLFPSFGESGHLTRQHFARELKELAAAAGLAPRLVSPHVLR 266

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              A+     GA    +    G   +   + YT   +  
Sbjct: 267 HAFASHLLHNGADLRIVQTLLGHTDISTTQIYTHVVEER 305


>gi|221133384|ref|ZP_03559689.1| Tyrosine recombinase xerC [Glaciecola sp. HTCC2999]
          Length = 383

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 57/347 (16%), Positives = 100/347 (28%), Gaps = 33/347 (9%)

Query: 7   LPPFVTKE--RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64
           LP     E  +T  G   Y FR    +   L   +  +   A   A     P     + P
Sbjct: 30  LPKGFRIEIRKTSKGIGTYRFRTKV-KDHNLGRTNALSLEQALQQA-AQLIPSPTPPHIP 87

Query: 65  RKKPT---------TLKWLISEYRKSAHWGSLAVNSRISF---ESYFDQIIRKSGDFDYR 112
              P          TL     +Y     W  +    R        +  +I    G     
Sbjct: 88  LSPPIAQASPTCTFTLNEFWEQYY----WPHIKTRLRTCRNIESMWRIRIQPTFGHQRLD 143

Query: 113 KI---TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
            I     +  ++ +   + + S     +  +  +F  A++ E +  NPC  VE  K   +
Sbjct: 144 DIKVLELERFQTSLIEMQLSGSHVTGHIKLLSRMFTLAIQWELITKNPCDKVEYMKFDNQ 203

Query: 170 GIRPWTKEDMQQFKSF---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226
             R  + ++  +F S      E     L    L+ +G+R   +       +      I  
Sbjct: 204 KERFLSSDEQTRFISVLMEHPERPVNLLMIFLLV-TGVRSGVAKSLRWSWINMEKQIITV 262

Query: 227 ----QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
                K     T+ L    M +L        T+   N   ++    F   FK     A +
Sbjct: 263 PPSIAKNKKQNTIFLNTTAMDILKRLAGINPTYVFINPMTQLPYNDFKKSFKTALKAAQI 322

Query: 283 NKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           + S   H +R    +       +   +              Y K + 
Sbjct: 323 SDSVRIHDLRHTFCSNLVSNNVSLASVQQLANHACYSTTLRYAKVSQ 369


>gi|303257603|ref|ZP_07343615.1| putative integrase/recombinase [Burkholderiales bacterium 1_1_47]
 gi|302859573|gb|EFL82652.1| putative integrase/recombinase [Burkholderiales bacterium 1_1_47]
          Length = 358

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 61/311 (19%), Positives = 110/311 (35%), Gaps = 46/311 (14%)

Query: 56  PKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT 115
            + E  ++ R    TL  LI EY   A     +  +             K        IT
Sbjct: 43  AELELGSAERSSQITLSALIDEYIVEATSQKRSKRTEEIRLRRLQ--RDKLATRALSSIT 100

Query: 116 TKHIRSGVESR----------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165
            K I + +E R            +PS+  + LT +  +F++A++ E   +NPC  VE+P+
Sbjct: 101 KKTIENYIERRLQERAKNRDSNISPSTVNRELTILSDVFQYAIKNELTDVNPCRGVEKPR 160

Query: 166 RKTEGIRPWTKEDMQQFKSF--WSEGSQPR-------LAFEFLLYSGLRCSDSCRAGVQH 216
                 R  + ED+++      W   + P+        AF F   +G+R  +  +     
Sbjct: 161 EPEHRERVASGEDIEKLLLACGWDGHTVPKNKMQLAVAAFLFSCQTGMRAGELLKIEYSW 220

Query: 217 LQNNIFSIKTQ--KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274
           + +N+  +  +  KT +   V L     ++L +     E  +       +N       F+
Sbjct: 221 IDDNVLHVPAEATKTLSRRDVALSARAREILKLV---MELEYEPRIFGGLNDHNRDTLFR 277

Query: 275 AKATKAGV-------------NKSAHGVRKFSATISA----DAGA---TAHELMATYGWK 314
               +AG+               + H  R   AT +A    + GA       L    G K
Sbjct: 278 KVRDRAGLGPEYDSQNRLIKEGLNFHDGRATFATWAASPDPETGAPRLDVLALARQTGHK 337

Query: 315 TVDQAETYTKG 325
            +   + Y + 
Sbjct: 338 DLKMLQRYYRA 348


>gi|255320348|ref|ZP_05361532.1| site-specific recombinase XerC [Acinetobacter radioresistens SK82]
 gi|262379369|ref|ZP_06072525.1| tyrosine recombinase XerC [Acinetobacter radioresistens SH164]
 gi|255302543|gb|EET81776.1| site-specific recombinase XerC [Acinetobacter radioresistens SK82]
 gi|262298826|gb|EEY86739.1| tyrosine recombinase XerC [Acinetobacter radioresistens SH164]
          Length = 306

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 42/278 (15%), Positives = 90/278 (32%), Gaps = 27/278 (9%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGV----ESRK 127
           L+S + K     + + ++  ++       +            I    +R  +    E  +
Sbjct: 8   LLSMWLKEREIQNQSAHTLSAYARDVKDFLDFCAVKKLPLNSIEASDLREYLALKVEREQ 67

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            + SS  + L+++R   KWA + +Y+  NP    +  ++          E +QQ     +
Sbjct: 68  LSSSSLQRHLSAIRQFMKWAEQGQYLGFNPADDFQLKRQPRPLPGMIDIETVQQILDQPA 127

Query: 188 EG--------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---- 235
                      + +   E L  SGLR ++     ++ +  N   ++    G    +    
Sbjct: 128 PEKLQDQHLWLRDKAMLELLYSSGLRLTELQSLCMKDIDFNRRLLRITGKGNKTRIVPFG 187

Query: 236 -----ELPDGFM--KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG--VNKSA 286
                 L       +L           FI+    ++   Q     K +A +AG  ++   
Sbjct: 188 TQAYESLLKWLEVYRLWQGQFNADSAVFISQKGGQLGPRQIENRVKLQALRAGVNIDLHP 247

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           H +R   A+           +    G   +   + YT 
Sbjct: 248 HLLRHCFASHMLSNSGDLRAVQEMLGHSNLSTTQIYTH 285


>gi|253571052|ref|ZP_04848460.1| integrase [Bacteroides sp. 1_1_6]
 gi|251840001|gb|EES68084.1| integrase [Bacteroides sp. 1_1_6]
          Length = 381

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 44/210 (20%), Positives = 80/210 (38%), Gaps = 19/210 (9%)

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVER--PKRKTEGIRPW-TKEDMQQFKSF---WSE 188
            +  ++      AVR++ +  NP   +E+    RK E +R + T E++Q          E
Sbjct: 165 NYYRALNGALNSAVRKKKMKANPFNELEKSEKIRKPESMRSYMTIEEVQALIDTPMPHEE 224

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT----QKTGTIITVELPDGFMKL 244
               + A+ F  + GLR SD  +     +  +    +     +KT   I + L    +K 
Sbjct: 225 YEIVKCAYLFSCFCGLRISDIIKLKWNDVFVDRGQYRLAVSMKKTKEPIYLPLSPEALKW 284

Query: 245 L--AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
           +        ++  F        +A    +  K  A  AG++K  S H  R   AT+    
Sbjct: 285 MPERGGKSSEDNVFDL-----PSANTIRMQLKPWAKAAGISKRFSYHTSRHTFATMMLTL 339

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIR 330
           GA  + +    G   V   + Y K  ++ +
Sbjct: 340 GADLYTVSKLLGHADVKMTQVYAKIINKKK 369


>gi|319407796|emb|CBI81447.1| integrase/recombinase XerC [Bartonella sp. 1-1C]
          Length = 321

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 39/262 (14%), Positives = 81/262 (30%), Gaps = 25/262 (9%)

Query: 88  AVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESRK---HTPSSAIQFLTSM 140
           AV        +   + +  G          +    +R+ +  R+    +  S  + + S+
Sbjct: 43  AVAYERDTRQFLFFLCQHLGYQPALNDLADLHVADLRAYLAYRRTQNISARSLSRNMASL 102

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE-------DMQQFKSFWSEGSQPR 193
           R  F +  R++ V +     V  PK +    +P T E       +  Q ++     ++  
Sbjct: 103 RSFFNYLSREKLVNVPAAKLVRTPKHRKSLPKPLTIESALRIVKEENQQETEPWIIARNT 162

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI--KTQKTGTIITVELPDGFMKL----LAM 247
                L   G+R S++     +   +        T K G    + L     K     L  
Sbjct: 163 AILILLYGCGMRISEALALTPEQFADPSIKSLSVTGKGGKTRLIPLIPIVHKAIENYLKC 222

Query: 248 TP---IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGA 302
            P   +  +  F+    + +         +      G+ ++   H +R   AT     G 
Sbjct: 223 CPYPLVNTQPIFLGVRGKPLQPAIIQRAVQNLRAHLGLPETTTPHALRHSFATHLLSRGG 282

Query: 303 TAHELMATYGWKTVDQAETYTK 324
               +    G   +   + YT 
Sbjct: 283 DLRTIQELLGHACLSTTQVYTH 304


>gi|317481431|ref|ZP_07940498.1| phage integrase [Bacteroides sp. 4_1_36]
 gi|316902416|gb|EFV24303.1| phage integrase [Bacteroides sp. 4_1_36]
          Length = 385

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 55/316 (17%), Positives = 110/316 (34%), Gaps = 39/316 (12%)

Query: 55  TPKREYINSPRKKPTTLKWLISEYRKS-------AHWGSLAVNSRISFESYFDQIIRKSG 107
             K++   +   K  T      +Y +                  R   E+Y  +  +   
Sbjct: 70  EKKQKTEENEAAKTMTWLQWCDDYVRCAMLDGNCPKMIQHKDVVRRRIETYLKRAKKT-- 127

Query: 108 DFDYRKITT----------KHIRSGVESRKHTPSSAIQFL----TSMRVLFKWAVRQEYV 153
           D   + +            ++ R+  + + +    A   L     +++ +F  AVR   +
Sbjct: 128 DVLLKDVDRDLVSGLFGYMRNYRNRKQIKANGGRLAAYTLVLFEETVKAIFNKAVRDGLM 187

Query: 154 AINPCLSV---ERPKRKTEGIRPWTKEDMQQFKSFWSE---GSQPRLAFEFLLYSGLRCS 207
           A NP   +   ER     +     T +++++F +   +       + AF F   +GLR  
Sbjct: 188 ASNPVQELTREERFHAPDKHREYLTADELKRFLAVEPQTYMEEVVQRAFGFSCMTGLRLG 247

Query: 208 DSCRAGVQHLQN----NIFSIKTQKTGTIITVELPDGFMKLLAMTP-IGKETFFINNDKQ 262
           D  R     +++       S+   KT   + V L    + LL   P  G++       K+
Sbjct: 248 DMQRLRWSDIKDVNGVQTVSVIQHKTKRPVAVPLNALALSLLPPRPENGEDGIIFPLVKK 307

Query: 263 KMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
                  + + +    KAG+ K    H  R  +AT++  AGA  + +    G  ++   +
Sbjct: 308 P---DNVAKYVRRIKDKAGIEKDFTYHSSRHSAATLAITAGAELYSVSKILGHGSIASTQ 364

Query: 321 TYTKGADRIRLGIKNS 336
            Y K     ++   N 
Sbjct: 365 VYAKVKMEKKVEAMNL 380


>gi|160875353|ref|YP_001554669.1| integrase family protein [Shewanella baltica OS195]
 gi|160860875|gb|ABX49409.1| integrase family protein [Shewanella baltica OS195]
 gi|315267553|gb|ADT94406.1| integrase family protein [Shewanella baltica OS678]
          Length = 296

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 42/272 (15%), Positives = 87/272 (31%), Gaps = 18/272 (6%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KH 128
              L  ++  +         +  ++     +I     D     +TT  ++         H
Sbjct: 9   FDLLYEQHLTNLTLQGKRPATIDAYSRAIRRIAAYF-DCCPDTLTTDDLKRYFADLIASH 67

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           + S+       ++  +   + + +  +N    + +P +        T  ++    S   +
Sbjct: 68  SWSTVKLDRNGLQFFYFHVLNKSWQWLN----IVKPPQVKHLPDILTPCEVAIVISLTRQ 123

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFMKLLA 246
             + ++ F  L   GLR  ++    V  +   +    I+  K G    V LP   +  L 
Sbjct: 124 -LRYQVCFLTLYSMGLRLGEAISLQVGDIDAGLMQVHIRDAKGGKDRLVPLPQRTLLALR 182

Query: 247 ---MTPIGKETFFINNDKQK---MNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISA 298
               T       F   D Q    M+        K    +  ++K  S H +R   AT   
Sbjct: 183 YYWRTHRHPHWLFPGKDNQPDSLMDRGGLQKAMKQVILECNIHKAISPHSLRHSYATHLL 242

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIR 330
           + G     +    G  +++    YT+  D  R
Sbjct: 243 EQGLDLRSVQTLLGHHSLNTTARYTRLTDITR 274


>gi|325270622|ref|ZP_08137220.1| phage integrase family integrase/recombinase [Prevotella
           multiformis DSM 16608]
 gi|324987017|gb|EGC19002.1| phage integrase family integrase/recombinase [Prevotella
           multiformis DSM 16608]
          Length = 330

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 35/278 (12%), Positives = 93/278 (33%), Gaps = 13/278 (4%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG---DFDYRKITTKHIRSGVESRKHTP 130
           L++ +  +      +  +   + S  + ++ K     D         ++    E R  + 
Sbjct: 55  LLNAFIAAKKIEGCSDKTLHYYRSSIEALLAKLNKKIDVIVTNDIRNYLSDYQEERLSSR 114

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
            +           F W   ++Y+  +P   + + + ++      + E+M+  +    E  
Sbjct: 115 VTIDNLRRIFSSFFAWLEDEDYIGKSPVRRIHKVRTESLVKEVLSDENMEVLRDTCHE-I 173

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDG----FMKLL 245
           +     + L  +G+R  +  +   + +       +   K      V           + L
Sbjct: 174 RDLAMIDLLASTGMRVGELAKMNREDIDFQERQCVVFGKGNKEREVYFNARTKIHLKRYL 233

Query: 246 AMTPIGKETFF--INNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGA 302
                     F  +++   ++  +   +  +    KAG++K   H  R+  AT++ D G 
Sbjct: 234 ESRKDNNPALFVSLSSPHNRLTISGVEVRLRQLGRKAGISKVHPHKFRRTLATMAIDKGM 293

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
              ++    G   +D    Y    ++  + I + + I 
Sbjct: 294 PIEQVQKLLGHVKIDTTLHYA-MVNQTNVKIAHRKFIG 330


>gi|293568954|ref|ZP_06680267.1| phage integrase family protein [Enterococcus faecium E1071]
 gi|291588387|gb|EFF20222.1| phage integrase family protein [Enterococcus faecium E1071]
          Length = 378

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 52/365 (14%), Positives = 113/365 (30%), Gaps = 55/365 (15%)

Query: 15  RTRHGKIIYYFR--KGHGRRIRLPYPHE---STFIPAYMSALTGSTPKREY-INSPRKKP 68
           R R  +  YYF      G R ++             A    L+      +Y + +  +  
Sbjct: 6   RKRGKRWYYYFEDINDDGSRKKVEKVGGDTRPEAEAALRKVLSDIDETGQYFLGTDTRVK 65

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESR- 126
             L + + EY K     +L  N+  ++     + I    G      ++   +++ + +  
Sbjct: 66  QYLDFWMEEYVK----LNLKYNTYENYRFTIKNHIDGYLGKKKLTDLSPALLQNFINAEF 121

Query: 127 -----KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK-----TEGIRPWTK 176
                K T +     L +   +  +      +  NP L V+ PK +      + ++  + 
Sbjct: 122 KKGYSKKTMTITHSVLKNALNMAVY--PWGLIKQNPMLYVKIPKYEERPTTKKDLKIISL 179

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----------------QNN 220
           ED         EG    +      Y+G+R  + C     ++                   
Sbjct: 180 EDFDHMLEITPEGHPFYIPLNIGFYTGMRVGEVCGLTWDNVDFSNGTTTVEKQMVKNDGA 239

Query: 221 IFSIKTQKTGTIITVELPDGFMKLLAMTP--------------IGKETFFINNDKQKMNA 266
                 + + +  T+ +    + +L                  I         D   +  
Sbjct: 240 WIYGTPKTSSSNRTIFIGQTLLAILKKHKKQQLENRMKYGKLYIDSNAVCTKEDGGLVTP 299

Query: 267 TQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKG 325
           +      K  +    ++ + H +R   AT+  + GA   E+    G   +    +TY+  
Sbjct: 300 SVVKWNTKRISNALSLSFNFHSLRHTHATLLLENGAKMKEISERLGHSRISITMDTYSHV 359

Query: 326 ADRIR 330
            D++R
Sbjct: 360 TDKMR 364


>gi|304386123|ref|ZP_07368463.1| site-specific recombinase [Pediococcus acidilactici DSM 20284]
 gi|304327850|gb|EFL95076.1| site-specific recombinase [Pediococcus acidilactici DSM 20284]
          Length = 396

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 56/314 (17%), Positives = 112/314 (35%), Gaps = 48/314 (15%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
            + +YR +    +L   ++     +   ++   GD    ++T    +  V        S 
Sbjct: 88  WMEQYRLTVRESTL-EKTQRIIRVH---VLPAFGDMLIDQVTPNVCQRVVNKWFLEAKSY 143

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP----WTKEDMQQFKSFWSEG 189
            ++L    ++F +A+R EYV  NPC  V  P+ + +        WT++++  F  + +  
Sbjct: 144 KKWLNYASMIFDYALRAEYVGRNPCTLVTMPRVQEQAGEKLENFWTRDELNTFFDYVTPE 203

Query: 190 S--QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-----------------G 230
              +    F  L YSG+R  +      + +     +++  KT                  
Sbjct: 204 RDVEQFTMFRVLAYSGIRKGELLALTWKDINFEDNTLRVNKTLTQGLGGKLIVQPPKSRA 263

Query: 231 TIITVELPDGFMKLLAMTP-IGKETF--------------FINNDKQKMNATQFSIWFKA 275
              T++L D  M+ L     + +ETF              F +N     +    + W   
Sbjct: 264 GRRTIDLDDSTMRYLRQWKGVQRETFLGMGFNTNNVDQLVFASNRNHFRSMNTPTKWLNK 323

Query: 276 KATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA---ETYTKGADRIRL 331
                G+   S HG R   A++   +G    E     G    D +   + YT   ++  +
Sbjct: 324 AIKATGLKHISIHGFRHTHASLLYQSGVGLKETQQRLGHSRADSSVTLDVYTHTTEQQNV 383

Query: 332 GIKNSRRISSVVDS 345
                +R  + V++
Sbjct: 384 A--ALQRFENYVEA 395


>gi|325288214|ref|YP_004264395.1| integrase family protein [Syntrophobotulus glycolicus DSM 8271]
 gi|324963615|gb|ADY54394.1| integrase family protein [Syntrophobotulus glycolicus DSM 8271]
          Length = 403

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 60/298 (20%), Positives = 110/298 (36%), Gaps = 52/298 (17%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFD--YRKITTKHIRSGVES--- 125
           KWLI          ++A  +   +++  D +I R   + D    ++T +HI+   +S   
Sbjct: 93  KWLIQAK------PTIAKTTFKGYQTMLDGRISRYFTELDITLAEVTPQHIQDFHQSIFD 146

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
             HTP++ I +   +R   + AV++E +  NP   V+RPK+     + ++ E+M      
Sbjct: 147 EGHTPNTVIHYHAVLRRALQNAVKKEIIGSNPADRVDRPKKNVYHAQFYSAEEMMALFDA 206

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIK------------------ 225
            S+     +  +   Y GLR S+         +L+    SIK                  
Sbjct: 207 ISDDPLE-ICVKLAAYYGLRRSEVLGLKWDAINLEQKTISIKHKVIEDTVDGKSIAVGED 265

Query: 226 TQKTGTI-ITVELPDGFMKLLAMTPIGKETF----------------FINNDKQKMNATQ 268
             KT +   T+ L     KLL      +E +                 ++   + M    
Sbjct: 266 VLKTKSSFRTLPLLPSVEKLLLAEKEKQEMYRKLFKRSYCRDYLDYICLDQTGKLMRPNY 325

Query: 269 FSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTK 324
            +  F     KA + K   H +R   A++    G +  ++    G  T    A+ Y+ 
Sbjct: 326 VTDHFSWVLEKADLKKIRFHDLRHSCASLLLANGISMKQIQIWLGHSTFSTTADIYSH 383


>gi|302185959|ref|ZP_07262632.1| site-specific recombinase, phage integrase family protein
           [Pseudomonas syringae pv. syringae 642]
          Length = 354

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 51/289 (17%), Positives = 100/289 (34%), Gaps = 26/289 (8%)

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119
           YI     +  TL+  +  Y  S    +    ++    S   ++I   G +    ++ + I
Sbjct: 50  YIQRSGSERMTLEAALKRYL-SDITPTKKPTTQRGETSKAKKLIEHLGKYSLAALSAEII 108

Query: 120 RSGVESRKHTPS-----SAIQF---LTSMRVLFKWAVRQEY---VAINPCLSVERPKRKT 168
               + R + PS     S       L  +  L+  A+ QE+   +  NP L++ +P    
Sbjct: 109 AGYRDKRLNEPSRGGTISNNTVRLELALLSHLYTVAI-QEWGLGLTFNPVLNIRKPSPGD 167

Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQN--NIFSI 224
              R  + E+ +   +  +  S P L       L +G+R S+        +     +  +
Sbjct: 168 GRDRRLSPEEERLLLAAVNRHSNPMLGWIVCIALETGMRSSEISSLRRPQVDLAKRVIRL 227

Query: 225 KTQKTGTIITVELPDGFMKLLAMT------PIGKETFFINNDKQ--KMNATQFSIWFKAK 276
              K     TV L     ++          PI     F     +  K     F+  +   
Sbjct: 228 SDTKNDGSRTVPLSKRATEVFKAAMDNPVRPIDCNLVFFGEPGKDGKRRPYTFTKIWGHL 287

Query: 277 ATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             K  + +   H +R  + +   + G +  E+ A  G K++   + YT 
Sbjct: 288 KKKLDLPDFRFHDLRHEAVSRLVEGGLSDQEVSAISGHKSMQMLKRYTH 336


>gi|148727179|ref|YP_001285625.1| putative integrase [Aeromonas phage phiO18P]
 gi|110349314|gb|ABG73202.1| putative integrase [Aeromonas phage phiO18P]
          Length = 350

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 56/345 (16%), Positives = 107/345 (31%), Gaps = 40/345 (11%)

Query: 26  RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG 85
           R G  +R R     E+    ++M  LT    ++            L  L++ +    H  
Sbjct: 22  RDGPRKRKRFATKGEALAWESHM--LTAKPWQQTEAVVATGDERRLSDLVAAWFG-RHGQ 78

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR------------KHTPSSA 133
           +LA   R         +     +    + T++   +  E R            + TP++ 
Sbjct: 79  TLADGERR--RDKLVWLCEALDNPIATEFTSELFSAYRERRLAGELYVPGQRKQVTPTTI 136

Query: 134 IQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
            +    ++ +F    R   +   NP   + + K +   +   ++++++Q      E    
Sbjct: 137 NREQLYLQAVFNELARLGVWSGGNPLADLRQYKVQESELAYLSQDEIEQLLDACKEQRDL 196

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252
            L     L +G R S+  +     +     +    K     TV +       LAM P   
Sbjct: 197 WLIVMLCLSTGARWSEIEKVSRSQIGMGRITFTKTKGKRNRTVPVAPWL---LAMLPRRT 253

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNK----SAHGVRKFSATISADAGATAHELM 308
              F                F+    +AG+      S H +R   A+     G     L 
Sbjct: 254 GRLF----------DDCYADFEKAIRRAGIKLPAGQSTHVLRHTFASHFMMNGGNILVLQ 303

Query: 309 ATYGWKTVDQAETYTKGA-----DRIRLGIKNSRRISSVVDSDDP 348
              G   +     Y   A     D +RL    + +    V ++ P
Sbjct: 304 RILGHTDIKMTMRYAHFAPDHLEDAVRLNPITALKNGDKVATEAP 348


>gi|78046247|ref|YP_362422.1| site-specific tyrosine recombinase XerC [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325925416|ref|ZP_08186815.1| tyrosine recombinase XerC subunit [Xanthomonas perforans 91-118]
 gi|325928769|ref|ZP_08189938.1| tyrosine recombinase XerC subunit [Xanthomonas perforans 91-118]
 gi|78034677|emb|CAJ22322.1| Site-specific recombinase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|325540850|gb|EGD12423.1| tyrosine recombinase XerC subunit [Xanthomonas perforans 91-118]
 gi|325544176|gb|EGD15560.1| tyrosine recombinase XerC subunit [Xanthomonas perforans 91-118]
          Length = 305

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 71/219 (32%), Gaps = 11/219 (5%)

Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
           +   +    R  +  S  + L++ R  + W ++   ++ +P  ++  PK   +  +    
Sbjct: 63  RQFVAAEHRRGLSAKSLQRRLSACRSYYAWLLKHGRISASPAAALRAPKAPRKLPQVLDA 122

Query: 177 EDMQQFKSF---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTI 232
           ++  +          G + R   E    SGLR S+ C    + L  ++   +   K    
Sbjct: 123 DEAVRLVEVPTDAPLGLRDRALLEVFYSSGLRLSELCALRWRDLDLDSGLVMVLGKGSKQ 182

Query: 233 ITVELPDGFMKLLA-----MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKS 285
             V +    +  L               F       ++     I  K  A + G+  +  
Sbjct: 183 RLVPVGSHAIAALREWRRDSGASADSHVFPGRAGGAISQRAVQIRIKQLAVRQGMFKDVH 242

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            H +R   A+   ++      +    G   +   + YT 
Sbjct: 243 PHMLRHSFASHILESSGDLRGVQELLGHSDIATTQIYTH 281


>gi|192824211|ref|YP_001994852.1| gp35 [Mycobacterium phage Pukovnik]
 gi|190610441|gb|ACE79961.1| gp35 [Mycobacterium phage Pukovnik]
          Length = 377

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 63/353 (17%), Positives = 125/353 (35%), Gaps = 38/353 (10%)

Query: 24  YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP--RKKPTTLKWL-ISEY-R 79
           Y     G+R   P  +++               + E    P  R K   +  + + EY +
Sbjct: 27  YVSSVDGQRHYAPTTYDNRMDAEAWLTSERRLIEMEVWTPPAERAKKKAVSAITVEEYAK 86

Query: 80  KSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR-KHTPSSAIQFL 137
           K      LA  +R  ++++   +I    GD    ++    +R+      K  P++     
Sbjct: 87  KWLEERDLAEGTRELYKTHARKRIYPVLGDTAVSEMNPAIVRAWWAGMGKDYPTARRHAY 146

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE 197
             +R +   AV  + +  NPC  +E+       +   T E++             R+A  
Sbjct: 147 NVLRAVMNTAVEDKLLTENPCR-IEQKTAAERDVEALTPEELDIVAG--EVFEHYRIAVY 203

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTII----------------TVELPD 239
            L ++ LR  +      + + ++      + ++    +                 V +P 
Sbjct: 204 ILAWTSLRFGELIELRRKDIDDDGETMLFRVRRGAARVGEKIVVGNTKTVRSKRPVTVPP 263

Query: 240 GFMKLLA--------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVR 290
              +++         M    +        KQ+++ + F+   K    K G  +   H +R
Sbjct: 264 HVAEMVREHMKDRTKMNKGPEALLVTTTQKQRLSKSAFTRSLKKGYRKIGRTDLRVHDLR 323

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343
              AT +A AGAT  ELM   G  T   A  Y + A   R  ++ ++R+S + 
Sbjct: 324 AVGATYAAQAGATTKELMVRLGHTTPRMAMKY-QMASEAR-DVEIAKRMSDLA 374


>gi|238764951|ref|ZP_04625889.1| Integrase [Yersinia kristensenii ATCC 33638]
 gi|238696810|gb|EEP89589.1| Integrase [Yersinia kristensenii ATCC 33638]
          Length = 330

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 42/235 (17%), Positives = 90/235 (38%), Gaps = 14/235 (5%)

Query: 94  SFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQ 150
           ++    +++IR+ GD    ++T K +      +      PSS  + L ++  +F   +  
Sbjct: 81  TYRVRLEKVIREMGDPRASQMTRKFMLEYRSDKLQAGLMPSSINRDLCALSAMFTVLIDA 140

Query: 151 E-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDS 209
           E +   NP   + + K +   +   + +++++      EG   R+A    L +G R +++
Sbjct: 141 EVFHNENPVHGIRKLKVRNTEMAFLSDDEIERLLERL-EGDARRVAI-LCLSTGARWNEA 198

Query: 210 CRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF 269
                +H+  N  +    K G   +V + +  + L+     G+          +++  QF
Sbjct: 199 AGLRGEHIVGNRVTFFNTKNGKSRSVPVANSVLSLIKTHRTGQLY--------RVDYLQF 250

Query: 270 SIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
               +         ++ H +R   AT     G     L    G  T+ Q  TY  
Sbjct: 251 REILREVKPDLPKGQATHVMRHTFATHFMMNGGNIVTLQRILGHATIQQTMTYAH 305


>gi|153000221|ref|YP_001365902.1| phage integrase family protein [Shewanella baltica OS185]
 gi|151364839|gb|ABS07839.1| phage integrase family protein [Shewanella baltica OS185]
          Length = 296

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 42/272 (15%), Positives = 87/272 (31%), Gaps = 18/272 (6%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KH 128
              L  ++  +         +  ++     +I     D     +TT  ++         H
Sbjct: 9   FDLLYEQHLTNLTLQGKRPATIDAYSRAIRRIAAYF-DCCPDTLTTDDLKRYFADLIASH 67

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           + S+       ++  +   + + +  +N    + +P +        T  ++    S   +
Sbjct: 68  SWSTVKLDRNGLQFFYFHVLNKSWQWLN----IVKPPQVKHLPDILTPCEVAIVISLTRQ 123

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFMKLLA 246
             + ++ F  L   GLR  ++    V  +   +    I+  K G    V LP   +  L 
Sbjct: 124 -LRYQVCFLTLYSMGLRLGEAISLQVGDIDAGLMQVHIRDAKGGKDRLVPLPQRTLLALR 182

Query: 247 ---MTPIGKETFFINNDKQK---MNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISA 298
               T       F   D Q    M+        K    +  ++K  S H +R   AT   
Sbjct: 183 YYWRTHRHPRWLFPGKDNQPDSLMDRGGLQKAMKQVIAECNIHKAISPHSLRHSYATHLL 242

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIR 330
           + G     +    G  +++    YT+  D  R
Sbjct: 243 EQGLDLRSVQTLLGHHSLNTTARYTRLTDITR 274


>gi|170076521|ref|YP_001733160.1| integrase/recombinase [Synechococcus sp. PCC 7002]
 gi|170079512|ref|YP_001736147.1| integrase/recombinase [Synechococcus sp. PCC 7002]
 gi|169887181|gb|ACB00892.1| integrase/recombinase [Synechococcus sp. PCC 7002]
 gi|169887383|gb|ACB01091.1| integrase/recombinase [Synechococcus sp. PCC 7002]
          Length = 289

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 44/252 (17%), Positives = 85/252 (33%), Gaps = 10/252 (3%)

Query: 83  HWGSL-AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMR 141
            W S  +  ++ ++       +        +      +      +  + ++    +  +R
Sbjct: 27  RWASQKSSATQKTYFYIVRNFMAAIAKPLNQITLDDLLDWLDSLQWQSQNTRRNKIAVIR 86

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKT-EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200
            LF +     Y+ +NP   +++PK       R  TK  +Q   +  ++  +  L  + L 
Sbjct: 87  SLFGFCHATGYITLNPAKLLQQPKENDCRIERIITKPKVQAM-AMNADTLRNELIIKTLY 145

Query: 201 YSGLRCSDSCRAGVQHL---QNNIFSIKTQKTGTII-TVELPDGFMKLLAMTPIGKETFF 256
             G+R S+             +N   +K    G  +  + +P G    L          F
Sbjct: 146 LLGVRVSELINIRWDDFIQTDDNGLKLKVMGKGDKVRFIVVPTGLWDELEALRNDSAYVF 205

Query: 257 IN---NDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGW 313
            +   N+  K++  Q     KA   + GV  S H +R   AT S   G   H L  + G 
Sbjct: 206 SSRKGNNGSKLSRIQVYRVVKANGDRVGVQVSPHFLRHSHATHSLKNGCDLHLLSESLGH 265

Query: 314 KTVDQAETYTKG 325
             +     Y   
Sbjct: 266 GNIAITSRYLHA 277


>gi|83593076|ref|YP_426828.1| phage integrase [Rhodospirillum rubrum ATCC 11170]
 gi|83575990|gb|ABC22541.1| Phage integrase [Rhodospirillum rubrum ATCC 11170]
          Length = 278

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 38/243 (15%), Positives = 72/243 (29%), Gaps = 39/243 (16%)

Query: 113 KITTKHIRSGVESRK-HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
            I  + ++   +  +  TP+ A   +T +R+L   AVR++ VA N   +         G 
Sbjct: 3   AIGAQRVQKLYDGMRVKTPAKANAVITMLRILLTHAVREQMVATNVAKNPGLISLPFSG- 61

Query: 172 RPWTKEDMQQFKSF------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225
           + W  + +  F          S G+    A     + G R  D         ++ +F + 
Sbjct: 62  KLWPVDAVSLFVEVADRMGWHSVGT----AVAINHWIGQRQGDILAMKRGAYRDGVFYVT 117

Query: 226 TQKTGTIITVELPDGFMKLLAM-----------TPIGKETFFINNDKQKMNATQFSIWFK 274
             KT   + V       + +             +         ++  Q      F   F 
Sbjct: 118 QNKTSARVAVPHSPWVQRRVDAELDRQKARKIGSTTTATLLLCDSTNQPWREDHFRHVFA 177

Query: 275 AKATKAG----------------VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
              +KA                 ++     +R  + T  A AG T  ++    G      
Sbjct: 178 EIRSKAADLWHTFFLDDGSSVAMLDLQFMHLRHTAVTELAIAGCTVLQIAGITGHTPKSV 237

Query: 319 AET 321
              
Sbjct: 238 TTI 240


>gi|304384214|ref|ZP_07366629.1| possible tyrosine type site-specific recombinase [Prevotella
           marshii DSM 16973]
 gi|325270616|ref|ZP_08137214.1| tyrosine type site-specific recombinase [Prevotella multiformis DSM
           16608]
 gi|304334715|gb|EFM00993.1| possible tyrosine type site-specific recombinase [Prevotella
           marshii DSM 16973]
 gi|324987011|gb|EGC18996.1| tyrosine type site-specific recombinase [Prevotella multiformis DSM
           16608]
          Length = 387

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 59/318 (18%), Positives = 121/318 (38%), Gaps = 34/318 (10%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWL---ISEYRKSAHWGSLAVNS----RISFES--YFDQ 101
           +T    K  Y+   R  P TL  L   + EY++     +L+  +    + S++S  +F Q
Sbjct: 50  ITAEYLKERYMQQSRPMP-TLAELYQSVCEYKEELQGRTLSKATVRAFKDSYKSFVHFLQ 108

Query: 102 IIRKSGDFDYRKITTKHIRS----GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINP 157
           +  ++ D    ++    +       +    +  SS    L  +  + + A+++ YV  +P
Sbjct: 109 VRDRA-DCMPTEVDKTLLEDYRLFMLRDLGNKESSVGNRLRHLHQVIRKALQERYVREDP 167

Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGV 214
              ++  +  T      T +D+Q+  ++    S     RL F    ++GL  SD  +  +
Sbjct: 168 FELID-IETPTYERNALTADDLQKLLAYRPHRSVDNHCRLIFLLGCFTGLAFSDLKKLRM 226

Query: 215 QHL-----QNNIFSIKTQKTGTIITVELPDGFMKLLAM-TPIGKETFFINNDKQKMNATQ 268
             +          S+   KT     V L     K+LA+ +P  +E  F        + + 
Sbjct: 227 DDVYTFGDGRRYISLCRTKTQNRSIVPLLPIAEKILAIVSPGRREGLFFREF---PSNSN 283

Query: 269 FSIWFKAKATKAGVN----KSAHGVRKFSATIS-ADAGATAHELMATYGWKTVDQAETYT 323
           F+   +    KAG+      ++H  R   AT    + G     +    G + +   E Y 
Sbjct: 284 FNRTIQEICIKAGLPPHTQATSHTARHTFATTICLENGLPIETVSKMLGHRFISTTEIYA 343

Query: 324 KGADRIRLGIKNSRRISS 341
           +   + ++  +    + S
Sbjct: 344 R-VTKSKIAKEMQPLMGS 360


>gi|257438381|ref|ZP_05614136.1| site-specific recombinase, phage integrase family [Faecalibacterium
           prausnitzii A2-165]
 gi|257199212|gb|EEU97496.1| site-specific recombinase, phage integrase family [Faecalibacterium
           prausnitzii A2-165]
          Length = 342

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 36/270 (13%), Positives = 86/270 (31%), Gaps = 26/270 (9%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS---MRV 142
           ++A  ++ S++     +           I    I + ++  +    S      +   +  
Sbjct: 61  NIAPTTQESYKYCLKMLKEGFYHRPLTVIRPIDIENFLKGMRRDGRSDSYISKARGMLYQ 120

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIR--PWTKEDMQQFKSFWSEGSQPRLAFEFLL 200
           +F+ A   + V  NP    E+ +      R   +T  ++        +  +  L+   LL
Sbjct: 121 IFQKAEANDLVRRNPVRLAEKMRATGTAKRKEAFTTAEVAHLMKVLPD-DRMGLSIRLLL 179

Query: 201 YSGLRCSDSCRAGVQHL--QNNIFSIKT--------------QKTGTIITVELP-DGFMK 243
            +G+R  +      Q +    ++  I+               +   +I  + +P +    
Sbjct: 180 GTGMRMQELLALEPQFIEEDGSVIHIRQAVKVVKGTVSIGSPKSKDSIRDIPVPLNVRPC 239

Query: 244 LLAMTPIGKETFFIN-NDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
            + +     +  + +       N T F   F+    +AG  +  + H  R    +     
Sbjct: 240 AIKLRDTTDQFIWESPKTGLPCNPTHFRDVFRKSLEEAGDVRLLTPHSCRHTYVSQMQAL 299

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIR 330
           G     + +  G    +  E Y    + IR
Sbjct: 300 GVDIQTIQSIVGHADTEMTEHYLHVQESIR 329


>gi|53717770|ref|YP_106756.1| prophage integrase [Burkholderia pseudomallei K96243]
 gi|52208184|emb|CAH34115.1| prophage integrase [Burkholderia pseudomallei K96243]
          Length = 376

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 43/320 (13%), Positives = 100/320 (31%), Gaps = 23/320 (7%)

Query: 18  HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISE 77
                ++     G RIR             ++A   S   R+     R    T    +  
Sbjct: 8   KNGPWWFDLSIDGSRIRQSSGTSDRRAAEELAAKVASDYWRQKKLGERPA-VTWDAAVVH 66

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--------T 129
           + K     +    S  + +     +  +    + R I  + I++ +E++           
Sbjct: 67  WLK----QNQHQRSLETTKQRLRWLTDQLKGENVRNIDRERIQALIETKAAEKYRGSPVA 122

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            ++  + + ++ V+      + ++   P   + + +  +  +   T+   Q+        
Sbjct: 123 GATVNRHMAALSVILHHCHAEGWIDAVP--PIRKLRENSARLTWLTRAQAQRLLEELP-- 178

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGFMKLL 245
           +  R    F L +GLR S+        +              K G +I+V L +  + +L
Sbjct: 179 THLRQMARFALATGLRESNVRLLEWAQVDRERALAWIHADQAKAGKVISVPLNEDALGVL 238

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATA 304
                  + +        +    ++  ++    +AG+     H +R   A+    AG   
Sbjct: 239 REQQGQHKRYVFVYKGAPIGRI-YNHAWQKACMRAGLSGLRFHDLRHTWASWHVQAGTPL 297

Query: 305 HELMATYGWKTVDQAETYTK 324
             L    GW +      Y  
Sbjct: 298 PILQQLGGWASYQMVLRYAH 317


>gi|300313582|ref|YP_003777674.1| site-specific integrase/recombinase [Herbaspirillum seropedicae
           SmR1]
 gi|300076367|gb|ADJ65766.1| site-specific integrase/recombinase protein [Herbaspirillum
           seropedicae SmR1]
          Length = 330

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 56/305 (18%), Positives = 95/305 (31%), Gaps = 46/305 (15%)

Query: 74  LISEYRKSAHWGS-LAVNSRISFESYFDQII-------RKSGDFDYRKITTKHIR---SG 122
           LI +Y         L+ ++   +     ++         +  D D RK T   IR   + 
Sbjct: 12  LIGQYLSFLRTQRKLSDHTVEHYGRDLQELRSLLAPAGEEHADIDLRKTTQVQIRKCAAR 71

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           + +R     S  + L++ R  F W   Q  +A NP   V+ PK+     +    +D  + 
Sbjct: 72  LHARGLNARSIARKLSAWRGFFGWLSMQMDLAANPVDGVKAPKKSKPLPKALAADDAIRL 131

Query: 183 KSFWSEGSQP--------RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS----------- 223
            S       P        R  FE L  SGLR S+     V  ++   +            
Sbjct: 132 VSQPDPVRDPDSTLAACNRAMFELLYSSGLRVSELVGIDVADVREGGYESAGWVDLEEAE 191

Query: 224 -IKTQKTGTIITVELPDGFMKLL------------AMTPIGKETFFINNDKQKMNATQFS 270
              T K G    V +       L            A         F+N    +++     
Sbjct: 192 VTVTGKGGKKRKVPVGQAARAALADWLPLRARLRKADGGPDSHALFLNERGARISPRVAQ 251

Query: 271 IWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           +  KA      +  +   H +R   A+    +      +    G  ++   + YT   D 
Sbjct: 252 LRLKAHGRALEMASDVHPHMLRHSFASHVLQSSGDLRAVQEMLGHASITATQVYT-ALDF 310

Query: 329 IRLGI 333
            RL  
Sbjct: 311 QRLAQ 315


>gi|296393161|ref|YP_003658045.1| integrase family protein [Segniliparus rotundus DSM 44985]
 gi|296180308|gb|ADG97214.1| integrase family protein [Segniliparus rotundus DSM 44985]
          Length = 329

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 40/269 (14%), Positives = 94/269 (34%), Gaps = 2/269 (0%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           L+ +++           +      +  +  + +G            R   +  + + ++ 
Sbjct: 54  LLEDWQTDMTIQRREETTISERVRFVSKFHKDTGVQPAHAQVIDIKRWIAQHPEWSTATV 113

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
             + T +R  FKW   Q++ + +P + +   +      RP + + + +  +        R
Sbjct: 114 ATYTTHLRAWFKWLQFQDHRSDDPMVKIAAVRHPERDPRPVSSDGLARLLADCRMQPTTR 173

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE 253
                     LR ++  +   + + ++ F +   K     T+ L     +L    P    
Sbjct: 174 ARVLLAACQELRVAEIAKIRGEDIVDSRFLVVNGKGNRTKTLPLHPLIAELAKKMPAQGF 233

Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGW 313
            +F   +   +++   S        +A V  + H +R +  T  +D GA    +      
Sbjct: 234 -WFPPPNGGHVDSKSVSQVISLAMRRAKVKGTPHSLRHWYGTELSDRGADLAVVQDLMRH 292

Query: 314 KTVDQAETYTKGAD-RIRLGIKNSRRISS 341
           K+ +    YT  AD R R  I +  + +S
Sbjct: 293 KSPNTTRGYTLIADKRKRQAILSLDQYNS 321


>gi|254449557|ref|ZP_05062994.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198263963|gb|EDY88233.1| phage integrase [Octadecabacter antarcticus 238]
          Length = 315

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 43/266 (16%), Positives = 82/266 (30%), Gaps = 17/266 (6%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132
            L     +     ++   ++              G       T   +R+       T  +
Sbjct: 28  ALRQRMIEDMRIRAIGETTQKGHIRAIKHFATFLGRSPDTA-TPDELRAYQLHMTDTEVT 86

Query: 133 A---IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM-QQFKSFWSE 188
                  + S+R+ F     +E +       ++  ++        + E++     +    
Sbjct: 87  TSTFNTRIVSLRLFFGVTCGREEMKR----YMQFRRKPRRLPVVLSVEEIGDLLAAVPGP 142

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLLA 246
           G   R A      +GLR S+ C   V  + +      +   K G      L  G + LL 
Sbjct: 143 GLTYRAALGISYGAGLRASEVCHLKVVDIDSGRMLIHVDEGKNGKDRKAMLSPGLLDLLR 202

Query: 247 ---MTPIGKETFFINNDK-QKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
              +    +   F    K   ++  Q +  F +    AG+NK  + H +R   AT   +A
Sbjct: 203 EYWLEARPEGWLFPGKPKINPLSPRQLNRAFTSAKHMAGINKPVTLHTLRHSFATHLLEA 262

Query: 301 GATAHELMATYGWKTVDQAETYTKGA 326
           G     +    G   +     YT  A
Sbjct: 263 GTDVRVIQVLLGHSKLSTTARYTHVA 288


>gi|289676143|ref|ZP_06497033.1| site-specific recombinase, phage integrase family protein
           [Pseudomonas syringae pv. syringae FF5]
          Length = 354

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 50/290 (17%), Positives = 108/290 (37%), Gaps = 27/290 (9%)

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119
           YI     +  TL+  +  Y +     +    ++ +  +   Q+I+  G +    ++++ I
Sbjct: 50  YIQRSGSERMTLENALQRYLREVS-PTKKPTTQKAEATKAQQLIKHLGKYSLAALSSEVI 108

Query: 120 RSGVESR------KHTPSSAIQF---LTSMRVLFKWAVRQEY---VAINPCLSVERPKRK 167
            +  ++R      +  P+S       L  +  LF  A+ QE+   +  NP L++ +P   
Sbjct: 109 ANYRDTRLGSLTNRGQPTSNNTVRLELALLSHLFTVAI-QEWGLGLTYNPVLNIRKPSPG 167

Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNN--IFS 223
               R  T ++ ++     ++ S P L       L +G+R S+        +     +  
Sbjct: 168 EGRNRRLTADEERRLLKEVNKHSNPMLGWIVSIALETGMRSSEITGLRRHQVDVKKRVAH 227

Query: 224 IKTQKTGTIITVELPDGFMKLLAMT------PIGKETFFINNDKQ--KMNATQFSIWFKA 275
           +   K  +  TV L                 PI  +  F     +  K     F+  +  
Sbjct: 228 LLVTKNDSARTVPLSKLAAATFQAALQNPVRPIDCDLIFFGEPGKDGKRRPYAFTKIWGL 287

Query: 276 KATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             +K G+ +   H +R  + +   + G +  E+ +  G K++   + YT 
Sbjct: 288 LKSKLGMPDFRFHDLRHEAVSRLVEGGLSDQEVSSISGHKSMQMLKRYTH 337


>gi|222147551|ref|YP_002548508.1| Integrase protein [Agrobacterium vitis S4]
 gi|221734539|gb|ACM35502.1| Integrase protein [Agrobacterium vitis S4]
          Length = 343

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 69/325 (21%), Positives = 111/325 (34%), Gaps = 31/325 (9%)

Query: 13  KERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           K   RHG   +Y R G  R + +     +               KR      R++   L 
Sbjct: 4   KLIKRHGGKNWYIR-GTIRGVSVDETTGTD------------DKKRAEEIRIRRETEILD 50

Query: 73  WLISEYRKSAHWGSLAVNSRIS--FESYFDQIIRKSGDFDYRKITTKHI-RSGVESRKHT 129
             I   RK+A +   +V          + D + R  G     +I    I R+        
Sbjct: 51  RRIHGIRKTATFLEASVMYLEEGGASRFVDVVARYFGTTPLSEIDQPAIDRAARVLYPDA 110

Query: 130 PSSAIQ--FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            +S       T +  +  +A +++     P   +ERP +    IR  T E+ Q      +
Sbjct: 111 KASTRNRQVFTPVSAVLNFAAKKKMCDK-PI--IERPAQPKGRIRWITIEEAQSLIDACA 167

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLL 245
              +P + F  L Y+G R S++     + +  +   +     KTG    V L  G + +L
Sbjct: 168 PHLKPLVTF--LFYTGARLSEALYLDWRDVDLSRSHVAFLDTKTGDDRGVPLHSGVVAML 225

Query: 246 AMTPIGKETFFINNDKQKMNAT-----QFSIWFKAKATKAGV-NKSAHGVRKFSATISAD 299
           A  P  +   F  +D +          Q    FK    +AG+ +   H  R   AT    
Sbjct: 226 ANLPHREGAVFRRHDGKPYEVKEDGGGQIKTGFKGACRRAGISDFHPHDCRHTWATWHYA 285

Query: 300 AGATAHELMATYGWKTVDQAETYTK 324
           A      LM   GWK+      Y  
Sbjct: 286 ANRDLITLMRLGGWKSERMVLRYAH 310


>gi|160894142|ref|ZP_02074920.1| hypothetical protein CLOL250_01696 [Clostridium sp. L2-50]
 gi|160894145|ref|ZP_02074923.1| hypothetical protein CLOL250_01699 [Clostridium sp. L2-50]
 gi|156864175|gb|EDO57606.1| hypothetical protein CLOL250_01696 [Clostridium sp. L2-50]
 gi|156864178|gb|EDO57609.1| hypothetical protein CLOL250_01699 [Clostridium sp. L2-50]
          Length = 351

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 43/285 (15%), Positives = 99/285 (34%), Gaps = 14/285 (4%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD 110
           L  +  K E   +  K+  + +  +  +  +      +  S   +++  + ++ +    D
Sbjct: 53  LRYTLAKYEVTENQNKEKYSEQNYVELFLSAKRIEGCSEKSLKYYKATIEAMLDEL-QKD 111

Query: 111 YRKITTKHIRSGV----ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
            + I T  IR  +    E +K +  +       +   F W   ++Y+  +P   + R K 
Sbjct: 112 VKHIVTDDIRGYLTEYQEKKKSSKVTIDNIRRILSSFFSWLEDEDYILKSPVRRIHRVKT 171

Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226
            T     ++ E ++  +   +E  +     + L  +G+R  +        +  N      
Sbjct: 172 GTNIKETYSDEALELMRDNCTE-LRDLAIIDMLASTGMRVGEMVLLNRDDIDFNERECVV 230

Query: 227 QKTGTIITVELPDG-----FMKLLAMTPIGKETFFIN--NDKQKMNATQFSIWFKAKATK 279
              G+   V   D          L          F++  +  +++      +  +    +
Sbjct: 231 FGKGSKERVVYFDARTKIHLQNYLESRRDNNPALFVSLKSPHKRLKIGGVEVRLREFGKQ 290

Query: 280 AGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
            G+NK   H  R+  AT++ D G    +L    G + +D    Y 
Sbjct: 291 LGLNKVHPHKFRRTLATMAIDKGMPIEQLQQLLGHRKIDTTLQYA 335


>gi|319442272|ref|ZP_07991428.1| integrase/recombinase [Corynebacterium variabile DSM 44702]
          Length = 312

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 45/277 (16%), Positives = 85/277 (30%), Gaps = 38/277 (13%)

Query: 85  GSLAVNSRISFESYFDQIIR-------KSGDFDYRKITT--KHIRSGVESRKHTP---SS 132
             L+ N+  ++    D+ +                 I      +R G E     P   +S
Sbjct: 20  RGLSSNTLENYGRDADRYLTWLEGEGLTVATATVADIERFITDLRKGHEVTGGRPLAQTS 79

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG--- 189
           A + L+++R L  +A R   +  +   +V   +++ +  +  T + +         G   
Sbjct: 80  AARSLSTVRSLHAFAARDRGIP-DAADAVPVTQQRADLPKALTIDQVTALIEAVPVGEDA 138

Query: 190 ----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTGTIITVELPDGFMK 243
                + R   E L  +G R S+     V  +    +   ++ +     +          
Sbjct: 139 RPLDLRDRALVELLYSTGARISEVLDLNVDDIDRTQDTVLLRGKGDHERVVPVGTPALAA 198

Query: 244 ----LLAMTPI-----------GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAH 287
               L+   P                 F+    ++M          A   KAG+ K S H
Sbjct: 199 VDAYLVRARPTLAARGSGRAGSDGAALFLTASGRRMRRQSGFNVVAAAGEKAGLGKVSPH 258

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            +R   AT     GA    +    G   V   + Y K
Sbjct: 259 ALRHSFATHLLAGGADIRVVQELLGHSHVVTTQIYAK 295


>gi|317057318|ref|YP_004105785.1| integrase family protein [Ruminococcus albus 7]
 gi|315449587|gb|ADU23151.1| integrase family protein [Ruminococcus albus 7]
          Length = 403

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 46/323 (14%), Positives = 102/323 (31%), Gaps = 50/323 (15%)

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR- 126
               + +  E+  +    +    +    +    +  +  G     KI T+ I+  +    
Sbjct: 66  AAKFETVAEEWFSTYAEKNYKPKTLERTKQLKARTYKAIGHLRIDKINTRIIQKFINDLG 125

Query: 127 ----------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
                     K +P +   + T + ++F +A + + ++ NPC +V  PK        +T 
Sbjct: 126 GEGINIRTGGKLSPKTIKHYSTFISMVFSYAEKMQMISDNPCKNVLLPKIAEHEKEIYTL 185

Query: 177 EDMQQFKSFW-SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ------ 227
           E+ Q   S      ++ R      +Y G R  +      + +    N+ SI+        
Sbjct: 186 EETQHLLSLLQEAPTKYRAFLTLAIYGGFRRGELLGLEWKDVDFNTNVVSIRRTALYTKE 245

Query: 228 --------KTGTIIT--------VELPD--GFMKLLAMTPIGK-----ETFFINNDKQKM 264
                   KT   +         + +       +   +  +G      +  F   + + M
Sbjct: 246 KGHYTDTPKTKGSVRDLKFTADVINILKIHKAEQAKQILKVGDQWNETDRLFTTWNGKVM 305

Query: 265 NATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETY 322
           +      W K    +  +     H +R  +A++   +G     + A  G          Y
Sbjct: 306 DGATPYNWLKKLCDRNNLRFLGLHSLRHLNASLLIHSGVNIRTVSACLGHSQTSTTLNIY 365

Query: 323 TKGADRIRLGIKNSRRISSVVDS 345
                   +   N+  + SV D+
Sbjct: 366 AHS-----MAKANAEAMESVADT 383


>gi|255602863|ref|XP_002537936.1| conserved hypothetical protein [Ricinus communis]
 gi|223514495|gb|EEF24447.1| conserved hypothetical protein [Ricinus communis]
          Length = 384

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 56/354 (15%), Positives = 114/354 (32%), Gaps = 39/354 (11%)

Query: 1   MTPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60
           M     LP  V  +   HG   Y  R+ + +R  +     +  +P+   AL  +  +   
Sbjct: 41  MKKKSHLPKGVHAK---HG-AYYLVRQVNKQRSWIRLSAIADGLPSLYRALADAEMRGAV 96

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
            +        ++ + S++ +       A  ++ +       I +   +F    + T    
Sbjct: 97  DDR-------MQAICSQWLQEVSTKH-AKKTQANDIYQVRTISQAFAEFRAEDVRTPDAV 148

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI--NPCLSVERPKRKTEGIRPWTKED 178
             +++    P +   + + +R L +++  + Y     NP  ++     K    R  T  +
Sbjct: 149 EFLKAFAKMPRTYNAYRSMLRELMRFSEEKGYRESGANPVDAIRTASVKAR-NRYITDSE 207

Query: 179 MQQFKSFW------------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226
           +++ K                 G       +    +G R  D       ++       + 
Sbjct: 208 LRRVKVAALRSGGQRAKQINPAGRMICAILDMAYLTGQRIGDVLALPWANVGREGVLFRP 267

Query: 227 QK----TGTIITVELPDGFMKLLAMTPIGK----ETFFINNDKQKMNATQFSIWFKAKAT 278
            K    TG  + +E      +L+A     K       F   D    +       ++   T
Sbjct: 268 SKVEDSTGAQVLIEWTPRLRELVARIRAEKNVGLNYVFTGPDGGAYSYEALKSAWRRALT 327

Query: 279 KAGV-NKSAHGVRKFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
           +AGV +   H +R  + T      G TA + M      T  Q   Y +    IR
Sbjct: 328 RAGVKDAHIHDLRAKALTDVDRLHGVTAAQRM--GAHSTQSQTADYVRHKQAIR 379


>gi|295100875|emb|CBK98420.1| Site-specific recombinase XerD [Faecalibacterium prausnitzii L2-6]
          Length = 341

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 36/270 (13%), Positives = 86/270 (31%), Gaps = 26/270 (9%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS---MRV 142
           ++A  ++ S++     +           I    I + ++  +    S      +   +  
Sbjct: 60  NIAPTTQESYKYCLKMLKEGFYHRPLTVIRPIDIENFLKGMRRDGRSDSYISKARGMLYQ 119

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIR--PWTKEDMQQFKSFWSEGSQPRLAFEFLL 200
           +F+ A   + V  NP    E+ +      R   +T  ++        +  +  L+   LL
Sbjct: 120 IFQKAEANDLVRRNPVRLAEKMRASGTAKRKEAFTTAEVAHLMKVLPD-DRMGLSIRLLL 178

Query: 201 YSGLRCSDSCRAGVQHL--QNNIFSIKT--------------QKTGTIITVELP-DGFMK 243
            +G+R  +      Q +    ++  I+               +   +I  + +P +    
Sbjct: 179 GTGMRMQELLALEPQFIEEDGSVIHIRQAVKVVKGTVSIGSPKSKDSIRDIPVPLNVRPC 238

Query: 244 LLAMTPIGKETFFIN-NDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
            + +     +  + +       N T F   F+    +AG  +  + H  R    +     
Sbjct: 239 AIKLRDTTDQFIWESPKTGLPCNPTHFRDVFRKSLEEAGDVRLLTPHSCRHTYVSQMQAL 298

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIR 330
           G     + +  G    +  E Y    + IR
Sbjct: 299 GVDIQTIQSIVGHADTEMTEHYLHVQESIR 328


>gi|213422078|ref|ZP_03355144.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
          Length = 166

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 53/155 (34%), Gaps = 15/155 (9%)

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTP 249
           + +   E L  +GLR S+     +  +      ++   K      V L +  +  L    
Sbjct: 2   RDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYL 61

Query: 250 IGKETFFIN----------NDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATI 296
                + +N             Q+M    F    K  A  AG++    S H +R   AT 
Sbjct: 62  EHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATH 121

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA-DRIR 330
             + GA    +    G   +   + YT  A +R+R
Sbjct: 122 LLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLR 156


>gi|90962164|ref|YP_536080.1| Phage integrase [Lactobacillus salivarius UCC118]
 gi|90821358|gb|ABD99997.1| Phage integrase [Lactobacillus salivarius UCC118]
          Length = 381

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 57/303 (18%), Positives = 101/303 (33%), Gaps = 39/303 (12%)

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES- 125
           K      ++ E+         A   R       + +     D    KIT +H +      
Sbjct: 66  KSGKFGDVLDEWLALHKETVKASTWRYIERRVKNHVRPYFKDMYVDKITLRHCQDFTNKA 125

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP----WTKEDMQQ 181
               P    Q ++ ++    +A+R   +  NP L V +PK++T         + K+++++
Sbjct: 126 FAAAPVGFTQIISIVKNTLDYALRLGMIESNPMLYVIKPKKQTTISDKHGNYYNKDELKK 185

Query: 182 FKSFWSE-GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---------------NNIFSIK 225
           F +   +   +    F  L YSGLR  +        L                NN   I+
Sbjct: 186 FLAAAKDTDLKKYTLFRLLAYSGLRVGECLALTWHDLDYKNNTIAINKTYAKTNNGIKIQ 245

Query: 226 TQKTGTII-----TVELPDGFMKL----------LAMTPIGKETFFINNDKQKMNA-TQF 269
           T KT   I      VE      +           + +  + K+    +N+K    A    
Sbjct: 246 TPKTKASIRKVSLDVETIQVLKEWQLNQRKQLLKVGINAMNKQQLIFSNNKNSFIANETV 305

Query: 270 SIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGAD 327
            +     A K G++  + HG R   AT+   +G    ++ A  G   V      YT    
Sbjct: 306 RLAIHQIAKKTGIHPITTHGFRHTHATLLFASGMDIKQVQARLGHSNVQTTLNIYTHAIQ 365

Query: 328 RIR 330
             +
Sbjct: 366 DKQ 368


>gi|308455404|ref|XP_003090242.1| hypothetical protein CRE_23788 [Caenorhabditis remanei]
 gi|308265127|gb|EFP09080.1| hypothetical protein CRE_23788 [Caenorhabditis remanei]
          Length = 319

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 42/313 (13%), Positives = 90/313 (28%), Gaps = 53/313 (16%)

Query: 71  LKWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSG--------DFDYRKITTKHIRS 121
           L   I  +  +  +    +  +  ++      +             + D  ++  + +R 
Sbjct: 3   LGTAIDGFLSAVEFEYGYSPQTVRAYRRDLLSLSEYLEASAPDSGPESDVSELGLETLRD 62

Query: 122 GVESRKHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
            + SR+      S+  + + +++   KW  +   VA NP   +  PK  +   R  + + 
Sbjct: 63  WLWSRQEQGLAQSTLARNVATLKSFGKWLEQHRLVAGNPASRLRTPKAPSALPRVLSDDQ 122

Query: 179 MQQFKSFW--------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
           + +                 + R   E L  + LR S+ C   +  L     +++    G
Sbjct: 123 ISRILDRAESLARGGDPIAVRDRALLELLYATALRVSEVCGLDLSGLDRIQRTVRVVGKG 182

Query: 231 -TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV------- 282
                V         L        +  +N      ++       +  AT A         
Sbjct: 183 AKERVVPFGAPAALALEEYLSSARSELMNVATDAASSAGL---VRESATTAVFLSASGSR 239

Query: 283 ---------------------NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
                                 +  H +R  +AT   + GA    +    G  ++   + 
Sbjct: 240 IQAHQIYRLVARSLEQEPGSGPRGPHTLRHTAATHLLNGGADLRVVQEMLGHSSLASTQV 299

Query: 322 YTKGADRIRLGIK 334
           YT      RL   
Sbjct: 300 YTH-VSTERLAQS 311


>gi|268608336|ref|ZP_06142063.1| hypothetical protein RflaF_02413 [Ruminococcus flavefaciens FD-1]
          Length = 396

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 56/329 (17%), Positives = 105/329 (31%), Gaps = 57/329 (17%)

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRS 121
           +      + L  E+ ++    +L   +   +E       +I    G     KIT + I++
Sbjct: 63  KTSAMKFQELAEEWFENYAKNALRSTT---YERMLQLRGRIYPALGHMRMDKITPRQIQA 119

Query: 122 GVESRKH-----------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170
            V S               P +    L+ +  +F +AV+   V  NPC  V  PK     
Sbjct: 120 FVNSLSREGANERTGKPLAPKTIRHNLSFVSDVFSYAVKMGVVNDNPCTKVTLPKNNQAE 179

Query: 171 IRPWTKEDMQQFKSFW-SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ 227
            + +T E +Q+F S   +E  + R  F  +++SG R  +      + +   NNI S++  
Sbjct: 180 KKIYTPEQVQRFLSLLNNEPLKYRTFFNLMIFSGFRRGEMLGLEWKDVDFENNIISVRRT 239

Query: 228 KT---------------GTIITVELPDGFMKLLAMTP--------------IGKETFFIN 258
                             +  T++ P   M +L                  +  +  +  
Sbjct: 240 SNYTGRKGTYTDTTKTKKSQRTLKFPQEIMDMLREYKDEQDMQALKCGDKWVEADRLYTK 299

Query: 259 NDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVD 317
                M       W      K  +     H  R   A++  + G     +    G  TV 
Sbjct: 300 WKGLPMQNGTPYFWLGEFCEKHDLPFYGLHSFRHLFASLLVNQGVDIVTVSGALGHSTVS 359

Query: 318 QAE-TYTKGADRIRLGIKNSRRISSVVDS 345
                Y        +  +   ++S  V +
Sbjct: 360 TTSNIYCH------MLEEAQAKVSEAVSA 382


>gi|227519034|ref|ZP_03949083.1| bacteriophage integrase [Enterococcus faecalis TX0104]
 gi|227073534|gb|EEI11497.1| bacteriophage integrase [Enterococcus faecalis TX0104]
          Length = 392

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 63/392 (16%), Positives = 125/392 (31%), Gaps = 72/392 (18%)

Query: 1   MTPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60
           M    R    +T      GKI +YF+     R       E+    AY+  +     K++ 
Sbjct: 1   MENMSRFKKHITAT----GKITWYFQAFRTTRRGFNSKREAQL--AYLEMVKQHRNKQKR 54

Query: 61  INS-PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119
           + S  +    + KW   EY +S +     V +    E     + R  G      ++++ +
Sbjct: 55  LASNDKFSVVSQKWF--EYYRSLN--EQKVATYDKREEQVKILNRWIGGKKLSSLSSEEL 110

Query: 120 RSGVESRKHT----------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK-- 167
           +  +   K             +S    +  + ++F +  ++  +  NP   V+ PK +  
Sbjct: 111 QKFLFILKEKGIDGVNVGYAKNSLQSLVQVLNMVFNYCKKKNLINENPMKFVKMPKYQLS 170

Query: 168 ---------TEGIRPWTKEDMQQFKSF--WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216
                    +   +  T ++++ F ++    E     + F  L Y+G R S++     Q 
Sbjct: 171 LKDLKESVNSLEDKFLTVDELRAFLNYGIVYEELPMSVLFHVLFYTGCRVSEALALQPQD 230

Query: 217 LQNNI-----------------FSIKTQKT-GTIITVELPD-------GFMKLLAMTPIG 251
           +                     F I+T KT  +   V +           + +L  T   
Sbjct: 231 IDFERNEILFYKQTAVKGKSKDFRIETTKTVSSARRVPVTPLVMEKLQELIDVLNKTKRN 290

Query: 252 -----KETFFI-----NNDKQKMNATQFSIWFKAKATKAGVNKSAHG--VRKFSATISAD 299
                 ET+                   +   K    + G+NK  H    R   A++ A+
Sbjct: 291 SNFVVDETYLFVYLDPGKRGVPYRREYVNDHVKRCVERCGINKDFHTHLARHTMASLVAE 350

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRL 331
              +   L    G      ++ Y       +L
Sbjct: 351 Y-CSWDVLKDRLGHTDSTTSKIYRHLTSTEKL 381


>gi|288940629|ref|YP_003442869.1| integrase family protein [Allochromatium vinosum DSM 180]
 gi|288896001|gb|ADC61837.1| integrase family protein [Allochromatium vinosum DSM 180]
          Length = 361

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 42/285 (14%), Positives = 92/285 (32%), Gaps = 23/285 (8%)

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
           +  TLK  I  YR           +R ++    D    + G      +T   I    +  
Sbjct: 61  QKHTLKDAIKRYRTEI-LPDHTATTRPTYAQRLDYWCAELGHLRLSDVTPAKIAGCRDEL 119

Query: 127 --KHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
                P++   +L  +  +    V++  +V  +P   V++P       R  +++++ +  
Sbjct: 120 LTSKAPATVHGYLAVLASVLTTCVKRWHWVKESPMAHVDKPSVANGRTRFLSQDELSRLL 179

Query: 184 SFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIK-----TQKTGTIIT 234
                   P   LA    + +G R  +      + +    ++  ++     T K G    
Sbjct: 180 EACRASESPDLYLAVVLAITTGARRGELLGLRWRDVDLVKDVLYLRVDNETTTKGGVRAV 239

Query: 235 V------ELPDGFMKLLAMTPIGKET---FFINNDKQKMNATQFSIWFKAKATKAGVNK- 284
                   + +          +   T       +             F+    +AG+   
Sbjct: 240 RIASQVKPILEARQAGYRRGKVADITGAALVFPSRVSTRQPVDLRTPFRTALRRAGIEGF 299

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             H +R  +A+  A  GA+  E+ A  G ++    + Y   A++ 
Sbjct: 300 RWHDLRHSAASFMAAHGASLVEIGAVLGHRSAQTTKRYAHLAEQA 344


>gi|238922492|ref|YP_002936005.1| putative phage integrase/recombinase [Eubacterium rectale ATCC
           33656]
 gi|238925709|ref|YP_002939226.1| putative phage integrase/recombinase [Eubacterium rectale ATCC
           33656]
 gi|238874164|gb|ACR73871.1| putative phage integrase/recombinase [Eubacterium rectale ATCC
           33656]
 gi|238877385|gb|ACR77092.1| putative phage integrase/recombinase [Eubacterium rectale ATCC
           33656]
 gi|291525374|emb|CBK90961.1| Site-specific recombinase XerD [Eubacterium rectale DSM 17629]
          Length = 282

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 34/268 (12%), Positives = 93/268 (34%), Gaps = 17/268 (6%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---TPSSA 133
           +  ++    +L   S   +++Y    +         ++T + +R  + ++K      ++ 
Sbjct: 8   QLEEAGKIRNLKERSINCYKNYVSYFLNYMEKHP-EELTCQDVRDFLLAKKDNGLKATTL 66

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
             + +++R  ++  +   +      ++V R   + +     + +++ +      +  + +
Sbjct: 67  NLYNSAIRFFYRNVLHVLWDD----ITVPRMIIEHKLPTVLSTDEIDRLLDATDD-LKYK 121

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL------PDGFMKLLAM 247
             F  +  SG+R S+        +      I  + T   +               +    
Sbjct: 122 AMFATMYSSGMRVSEVIHLHYDDISRTNMQIHVRDTKNRMDRYTILSERNLALLTEYWFR 181

Query: 248 TPIGKETFFINND-KQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAH 305
               K   F N    Q +  +      +  A+ AG++  + H +R   AT   + G    
Sbjct: 182 KGRPKGILFPNQFTGQYLTVSTLEQVIRRSASAAGLSGVTPHCLRHSFATHLMEQGVEQR 241

Query: 306 ELMATYGWKTVDQAETYTKGADRIRLGI 333
            + A  G +     E Y   +++  +GI
Sbjct: 242 NIQALLGHRDPKSTEVYLHVSNKSIMGI 269


>gi|294619348|ref|ZP_06698812.1| phage integrase family protein [Enterococcus faecium E1679]
 gi|291594397|gb|EFF25810.1| phage integrase family protein [Enterococcus faecium E1679]
          Length = 378

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 51/365 (13%), Positives = 114/365 (31%), Gaps = 55/365 (15%)

Query: 15  RTRHGKIIYYFR--KGHGRRIRLPYPHE---STFIPAYMSALTGSTPKREY-INSPRKKP 68
           R R  +  YYF      G R ++             A    L+      +Y + +  +  
Sbjct: 6   RKRGKRWYYYFEDINDDGSRKKVEKVGGDTRPEAEAALRKVLSDIDETGQYFLGTDTRVK 65

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESR- 126
             L + + EY K     +L  N+  ++     + I    G      ++   +++ + +  
Sbjct: 66  QYLDFWMEEYVK----LNLKYNTYENYRFTIKNHINGYLGKKKLTDLSPALLQNFINAEF 121

Query: 127 -----KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK-----TEGIRPWTK 176
                K T +     L +   +  +      +  NP L V+ PK +      + ++  + 
Sbjct: 122 KKGYSKKTMTITHSVLKNALNMAVY--PWGLIKQNPMLYVKIPKYEERPTTKKDLKIISL 179

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----------------QNN 220
           ED         EG    +      Y+G+R  + C     ++                   
Sbjct: 180 EDFDHMLEITPEGHPFYIPLNIGFYTGMRVGEVCGLTWDNVDFSNGTITVEKQMVKNDGE 239

Query: 221 IFSIKTQKTGTIITVELPDGFMKLLAMTP--------------IGKETFFINNDKQKMNA 266
                 + + +  T+ +    + +L                  I         D + +  
Sbjct: 240 WVYGTPKTSSSNRTIFIGQTLLAILKKHKKQQLENRMKYGKLYIDSNAVCTKEDGELVTP 299

Query: 267 TQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKG 325
           +      +  +    ++ + H +R   AT+  + GA   E+    G   +    +TY+  
Sbjct: 300 SVVKWNTRRISNALSLSFNFHSLRHTHATLLLENGAKMKEISERLGHSRISITMDTYSHV 359

Query: 326 ADRIR 330
            D++R
Sbjct: 360 TDKMR 364


>gi|329114535|ref|ZP_08243294.1| Tyrosine recombinase XerC [Acetobacter pomorum DM001]
 gi|326696015|gb|EGE47697.1| Tyrosine recombinase XerC [Acetobacter pomorum DM001]
          Length = 315

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 78/221 (35%), Gaps = 23/221 (10%)

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSV-ERPKRKTEGIRPWT-------KEDMQQF 182
            +  + ++++R  FK+  R++ V  NP + +   P+ K    RP          ED+   
Sbjct: 86  RTRARRVSAVRSFFKYLARRQGVE-NPAIQLLSTPRTKKPLPRPLAKDQALAAPEDISDL 144

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----NNIFSIKTQKTGTIITVELP 238
                E  +    F  L   GLR S++    +  L     +N+  I   K G    V + 
Sbjct: 145 AHTPMEQQRDAALFLLLYGCGLRISEALNLNIADLDVMRSSNVLRI-LGKGGKERLVPVL 203

Query: 239 DGFMKLLAM------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVR 290
               + L         P      F+    +++         +     +G+    + H +R
Sbjct: 204 PVVQQALEAWRGRHPAPTPDAPLFVGIRGKRLQPAIAQKAMREWRHLSGLPDYVTPHALR 263

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
              AT   + GA    +    G  ++   + YT  AD  RL
Sbjct: 264 HSFATHLMEGGADLRVIQELLGHASLSTTQRYT-LADEARL 303


>gi|301162387|emb|CBW21932.1| putative tyrosine recombinase [Bacteroides fragilis 638R]
          Length = 308

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 39/260 (15%), Positives = 83/260 (31%), Gaps = 13/260 (5%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAI 134
           Y +       ++++  +++ YF   +      D   +T + I S +      KH  ++  
Sbjct: 36  YLELLEQKRYSLSTIKAYKIYFSDFMEYHKGQDLDLLTVEDINSYMLHMVKEKHISATQQ 95

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
               +    +   VR+          + R K         ++E+M+   +  S     R 
Sbjct: 96  NMRINAIKFYYEKVRKGKRQY--YGGIARAKEYKALPEVLSREEMKSIFAQLSNRKH-RC 152

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-----ITVELPDGFMKLLAMTP 249
               +  +GLR S+      Q + +    I+    G       ++ +L +          
Sbjct: 153 MISLIYSAGLRRSELLNLTPQDIISERMLIRIAGKGKKCRYSLLSEKLLNELRDYYREYR 212

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHEL 307
             K  F      ++ + +      K  A KAG+      H +R   AT   + G     +
Sbjct: 213 PQKWLFEGEQAGEQYSPSALVKILKEAARKAGIKHRVHLHMLRHTFATHLLEQGTDLRTI 272

Query: 308 MATYGWKTVDQAETYTKGAD 327
               G   +     Y   ++
Sbjct: 273 QELMGHTDIKTTAIYLHVSN 292


>gi|237711592|ref|ZP_04542073.1| site-specific recombinase [Bacteroides sp. 9_1_42FAA]
 gi|229454287|gb|EEO60008.1| site-specific recombinase [Bacteroides sp. 9_1_42FAA]
          Length = 381

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 48/237 (20%), Positives = 79/237 (33%), Gaps = 13/237 (5%)

Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV---ERPKRKTEGIRP 173
           +H          +P SA  ++         AVR E +  NP +++   ER K        
Sbjct: 149 QHTYKTRWGNPLSPKSAADYVGYFSTALNAAVRAEVIPENPIMTLAPTERIKVPESKREY 208

Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT----QKT 229
            T ++++            + A+ F  Y GLR SD      + +  +    +     QKT
Sbjct: 209 LTIDEIKALIDTECPREDVKRAYLFSCYCGLRLSDIYALRWKDIFLDGEQYRVSTVMQKT 268

Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--H 287
            T I + L    ++ L       +   I            +      A  AG+ K    H
Sbjct: 269 TTPIYLPLSRHAVRWLPERDGEGDELKIFA-GLPAEPN-INKVLAKWAVAAGITKKITYH 326

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
             R   AT+    GA  +      G   V   + Y K  D  +  ++    + SV D
Sbjct: 327 TSRHSFATMMLTLGADLYTTSKLLGHSNVKTTQIYAKIVDSKK--VEAVNLVDSVFD 381


>gi|297589909|ref|ZP_06948549.1| integrase [Staphylococcus aureus subsp. aureus MN8]
 gi|297577037|gb|EFH95751.1| integrase [Staphylococcus aureus subsp. aureus MN8]
 gi|315193060|gb|EFU23461.1| hypothetical protein CGSSa00_09058 [Staphylococcus aureus subsp.
           aureus CGS00]
          Length = 402

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 63/385 (16%), Positives = 128/385 (33%), Gaps = 62/385 (16%)

Query: 17  RHGKIIYYFRK---GHGRRIRLPYPHESTF----IPAYMSALTGSTPKREYINSPRKKPT 69
           + G   + +R          +  Y   S F       + + +     +     +P    +
Sbjct: 18  KRGNT-WRYRISLGKDAETGKYKYISNSGFKRKSDAKHHAEMVERQLRNGDYIAP--STS 74

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           T K +  ++  S +   + V+S  + E   +  I +  +   + I     +  V      
Sbjct: 75  TFKQVADDWI-SQYANEVKVSSVRAREKAINHAIERFNNKPIQTINKHEYQRFVNDISAQ 133

Query: 130 PSSA--IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK--------TEGIRP-WTKED 178
            S       + S  ++FK+A   + + I P   ++RPK+K        TE  +    K++
Sbjct: 134 YSKNYVDSIIASTNMIFKYAYDMKLIRIMPSEGIKRPKKKISVEELEDTEIHKKFLEKDE 193

Query: 179 MQQFKSFWSEGSQPRLAFEF---LLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ------ 227
           + QF         P+ +FE    L Y+G+R  +        +   NN  +I         
Sbjct: 194 LFQFLEVAKNHHSPQNSFEVFCTLAYTGMRAGELLALKWSDIDFENNTINITKTYYNPNN 253

Query: 228 ----------KTGTII-TVELPDGFMKLLAMTPI------------GKETFFINNDKQKM 264
                     KT + I  + +    +KLL                      F + +   +
Sbjct: 254 NKKQFQILTPKTESSIGKISVDPHVIKLLKNYKTDVQDTWKNELYVDNNFVFTDVNGYPL 313

Query: 265 NATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE- 320
              +  +W KA   K  +     S H  R     +  +AG    E+      K ++    
Sbjct: 314 VIKKLQLWIKAILKKTDITNKQISTHSFRHTHCALLIEAGVHIKEIQERLRHKDINTTMN 373

Query: 321 TYTKGADRIRLGIKNSRRISSVVDS 345
            Y K  +  +     S++ S ++++
Sbjct: 374 IYAKITNSYKK--DASQKFSKLMEN 396


>gi|153955558|ref|YP_001396323.1| integrase-related protein [Clostridium kluyveri DSM 555]
 gi|219855951|ref|YP_002473073.1| hypothetical protein CKR_2608 [Clostridium kluyveri NBRC 12016]
 gi|146348416|gb|EDK34952.1| Integrase-related protein [Clostridium kluyveri DSM 555]
 gi|219569675|dbj|BAH07659.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 416

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 51/345 (14%), Positives = 108/345 (31%), Gaps = 66/345 (19%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVE 124
               T +  I ++ K      LA  +   ++     +II   G     K+   HI     
Sbjct: 66  SGKITFEEFIKKWLKDYAEAELAPKTLYRYKELLYTRIIPALGHIKLNKLQPTHITEFYS 125

Query: 125 SRKH-------TP-----SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
           + +         P      + +     +  +   A++  ++  NP L ++ PK + +  R
Sbjct: 126 NLREDGIRNDGKPGGLSERTILHHHRLISSILATAIQWGFILNNPALRLKAPKVEKKEAR 185

Query: 173 PWTKEDMQQFKSFWS-EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ------------- 218
            +  E+          E  + +      +Y G+R  +        +              
Sbjct: 186 HFNIEETAYVLQLIENEPIKYKTMITLAIYGGMREGELTALTWSDINFDDCTIKINKSLQ 245

Query: 219 ---NNIFSIKTQKTGTIITVELPDGFMKLLAMTPI--------------GKETFFINNDK 261
                   IK+ KT T   + +P   M LL                     +  F   D 
Sbjct: 246 HLPGRDTFIKSTKTETTRLISIPISVMTLLKEYKRWQNTEKLKLGNLWHDSDALFTATDG 305

Query: 262 QKMNATQFSIWFKAKATK--------AGV---NKS--------AHGVRKFSATISADAGA 302
           + +  +  S WF     K          +   +KS         HG+R  SAT+  + G 
Sbjct: 306 KSIFPSTISKWFLKFIRKHNESIINDDKIPPKDKSKYLLKEVNFHGLRHTSATLLINQGV 365

Query: 303 TAHELMATYGW-KTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346
               +    G  +T    + Y+    +    ++ + ++ ++ +++
Sbjct: 366 DITTVSKRLGHARTSTTTDIYSHSLQKA--DVEAADKLENLFNNE 408


>gi|116872216|ref|YP_848997.1| phage integrase family protein [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116741094|emb|CAK20214.1| phage integrase family protein [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 386

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 45/264 (17%), Positives = 85/264 (32%), Gaps = 42/264 (15%)

Query: 98  YFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS---------------AIQFLTSMRV 142
            F++ +        R I+++ I   +     T +                  + L  +R+
Sbjct: 100 IFEKKMEYFYRMRIRDISSQDIEDWMHELSQTATRNSRKQEEITTLSRTYINRILGHLRI 159

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEF 198
           +   AV++  +  NP  SV    ++   +  W  E+ Q+  +   E S      ++ +E 
Sbjct: 160 ILNRAVKEGLIERNPVDSVSYFPKENNKVEFWEIEEFQKVMAMIPENSIQNQHRKIIYEM 219

Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-----------------GTIITVELPDGF 241
           L Y+GLR  +      +++      I  +KT                  +  T+ +    
Sbjct: 220 LFYTGLRIGELQALSWENVNFEKNQITVEKTLIYQGKNDWYFSTPKTNKSYRTISIGKTL 279

Query: 242 MKLLAMTP-----IGKETFFINNDKQKMNATQFSIWFKAKATKAG-VNKSAHGVRKFSAT 295
            K L         IG   +    D     +  FS W K  A KAG +    H +R     
Sbjct: 280 SKRLKKWQELQRMIGNFEYMSQLDGTFTPSYSFSNWLKDSARKAGVIPIKLHALRHSHVA 339

Query: 296 ISADAGATAHELMATYGWKTVDQA 319
           +  D       +    G   +   
Sbjct: 340 LLIDQNIQPLVIQERLGHANIQIT 363


>gi|282904692|ref|ZP_06312567.1| integrase [Staphylococcus aureus subsp. aureus C160]
 gi|282906371|ref|ZP_06314223.1| integrase [Staphylococcus aureus subsp. aureus Btn1260]
 gi|283958805|ref|ZP_06376251.1| integrase [Staphylococcus aureus subsp. aureus A017934/97]
 gi|295428615|ref|ZP_06821242.1| hypothetical protein SIAG_02387 [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|116282493|gb|ABJ97306.1| integrase [Staphylococcus aureus]
 gi|282330568|gb|EFB60085.1| integrase [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282594941|gb|EFB99917.1| integrase [Staphylococcus aureus subsp. aureus C160]
 gi|283789845|gb|EFC28667.1| integrase [Staphylococcus aureus subsp. aureus A017934/97]
 gi|295127597|gb|EFG57236.1| hypothetical protein SIAG_02387 [Staphylococcus aureus subsp.
           aureus EMRSA16]
          Length = 390

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 63/385 (16%), Positives = 128/385 (33%), Gaps = 62/385 (16%)

Query: 17  RHGKIIYYFRK---GHGRRIRLPYPHESTF----IPAYMSALTGSTPKREYINSPRKKPT 69
           + G   + +R          +  Y   S F       + + +     +     +P    +
Sbjct: 6   KRGNT-WRYRISLGKDAETGKYKYISNSGFKRKSDAKHHAEMVERQLRNGDYIAP--STS 62

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           T K +  ++  S +   + V+S  + E   +  I +  +   + I     +  V      
Sbjct: 63  TFKQVADDWI-SQYANEVKVSSVRAREKAINHAIERFNNKPIQTINKHEYQRFVNDISAQ 121

Query: 130 PSSA--IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK--------TEGIRP-WTKED 178
            S       + S  ++FK+A   + + I P   ++RPK+K        TE  +    K++
Sbjct: 122 YSKNYVDSIIASTNMIFKYAYDMKLIRIMPSEGIKRPKKKISVEELEDTEIHKKFLEKDE 181

Query: 179 MQQFKSFWSEGSQPRLAFEF---LLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ------ 227
           + QF         P+ +FE    L Y+G+R  +        +   NN  +I         
Sbjct: 182 LFQFLEVAKNHHSPQNSFEVFCTLAYTGMRAGELLALKWSDIDFENNTINITKTYYNPNN 241

Query: 228 ----------KTGTII-TVELPDGFMKLLAMTPI------------GKETFFINNDKQKM 264
                     KT + I  + +    +KLL                      F + +   +
Sbjct: 242 NKKQFQILTPKTESSIGKISVDPHVIKLLKNYKTDVQDTWKNELYVDNNFVFTDVNGYPL 301

Query: 265 NATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE- 320
              +  +W KA   K  +     S H  R     +  +AG    E+      K ++    
Sbjct: 302 VIKKLQLWIKAILKKTDITNKQISTHSFRHTHCALLIEAGVHIKEIQERLRHKDINTTMN 361

Query: 321 TYTKGADRIRLGIKNSRRISSVVDS 345
            Y K  +  +     S++ S ++++
Sbjct: 362 IYAKITNSYKK--DASQKFSKLMEN 384


>gi|158341559|ref|YP_001522723.1| phage integrase [Acaryochloris marina MBIC11017]
 gi|158311800|gb|ABW33409.1| phage integrase [Acaryochloris marina MBIC11017]
          Length = 337

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 56/303 (18%), Positives = 110/303 (36%), Gaps = 32/303 (10%)

Query: 49  SALTGSTPKREYINSPRKKPTTLKWL-ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG 107
            A+T     R   + P+  P  L W+ + E+ +S     ++ N+R ++E    Q +    
Sbjct: 14  QAITPIDTARSRTHPPQTTPADLLWMRVGEFMRS---REISSNTRKAYERDLKQFMD-WT 69

Query: 108 DFDYRKITTKHIRSGVESRKHTP---------SSAIQFLTSMRVLFKWAVRQEYVAINPC 158
           D  + +IT + +       K  P         ++  + L +++  FKW   ++Y+  +P 
Sbjct: 70  DKGWHEITARDLDRYKNHLKTEPNQRGQLRRNATINRNLAALQSFFKWLTVRDYIPKDPT 129

Query: 159 LSVERPKRKTEGIRPWTKEDMQQ-FKSFWSEGSQPRLAFEF--LLYSGLRCSDSCRAGVQ 215
           L +E+ K      + ++++++ + +++    G           L+  GLR S+  R  V 
Sbjct: 130 LLLEKLKADPVLPQEFSQDEVDKLYQAICDRGFHAFRDRALLHLIDHGLRASEIHRLNVG 189

Query: 216 HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP----------IGKETFFI----NNDK 261
                  +I+  K  ++ TV L     K +                    F+    N+  
Sbjct: 190 DYDGQRITIRVAKADSVGTVPLLKKARKAIDQYKQWREQQGDVLENDSPLFVSHSNNSKG 249

Query: 262 QKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
           Q++        FKA A  A V N   H  R   AT        +          +     
Sbjct: 250 QRLQYWGIYKIFKAIAEIAEVENAHPHRGRHTLATQLVMKDMDSVLARRITCHASEQSFV 309

Query: 321 TYT 323
            Y+
Sbjct: 310 RYS 312


>gi|71904526|ref|YP_281329.1| DNA integration/recombination/invertion protein [Streptococcus
           pyogenes phage 6180.4]
 gi|94991460|ref|YP_599560.1| DNA integration/recombination/inversion protein [Streptococcus
           phage 10270.5]
 gi|71803621|gb|AAX72974.1| DNA integration/recombination/invertion protein [Streptococcus
           pyogenes phage 6180.4]
 gi|94544968|gb|ABF35016.1| DNA integration/recombination/inversion protein [Streptococcus
           phage 10270.5]
          Length = 387

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 62/321 (19%), Positives = 106/321 (33%), Gaps = 52/321 (16%)

Query: 50  ALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGD 108
           A+ G T K +   +  K+ T L W    Y+ +     +  NSR S E      I+   GD
Sbjct: 55  AMNGYTVKEKPTVTTYKELTALWW--ESYKNT-----IKPNSRQSMEGIVRLHILPAFGD 107

Query: 109 FDYRKITTKHIRSGVESRKHTPSS------AIQ-FLTSM-RVLFKWAVRQEYVAINPCLS 160
               K+TT  I+  V    +  +       A   FL ++ R + ++ V  + +  NP   
Sbjct: 108 CKLSKLTTPVIQQQVNKWANNANKGIKGAYANYSFLNNINRRILQYGVTMQVIEHNPARD 167

Query: 161 VERPKRKTEGIRP---WTKEDMQQFKSFWS-------EGSQPRLAFEFLLYSGLRCSDSC 210
           V  P+++         ++ ++++QF ++         E     + ++ LL +G R  +  
Sbjct: 168 VIIPRKQNNKEHKVKFFSNQELKQFLNYLDDLDLSSYENFFDYVLYKTLLATGCRIGEVL 227

Query: 211 RAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ-------- 262
                 +     +IK  KT               L    I + T  +    +        
Sbjct: 228 ALEWSDIDLKKGTIKVSKTLNRYQETNTPKSKAGLRDIEIDRATVLLLKQYKNRQQVLSW 287

Query: 263 -----------KMNATQ-----FSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAH 305
                                      +     AGV + S HG R   ATI   AG  A 
Sbjct: 288 DLGRSETIVFTPFTTKYAYACLLRKRLQKHFKAAGVPDISFHGFRHTHATIMLYAGIEAK 347

Query: 306 ELMATYGWKTVDQA-ETYTKG 325
           +L    G   +     TY   
Sbjct: 348 DLQYRLGHSNISMTLNTYVHA 368


>gi|300115010|ref|YP_003761585.1| integrase family protein [Nitrosococcus watsonii C-113]
 gi|299540947|gb|ADJ29264.1| integrase family protein [Nitrosococcus watsonii C-113]
          Length = 310

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 44/247 (17%), Positives = 87/247 (35%), Gaps = 30/247 (12%)

Query: 115 TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
           T + +   +  R        +  + +   +KWA++   V  +P    ++PKR        
Sbjct: 59  TEQFVAWQMRERGTKAHIVARRSSCLGSFYKWAMKNALVESDPIYLADKPKRPYRIPVWL 118

Query: 175 TKEDMQQFKSFWSE----------GSQPR---------LAFEFLLYSGLRCSDSCRAGVQ 215
            KE+   F+                ++           + F  +L SGLR S++    V+
Sbjct: 119 EKEEQLAFQEAVQRTEDLPENIFGHTRAHIKTVRRRYDVLFGLILNSGLRISEALAVKVR 178

Query: 216 HLQN-NIFSIKTQ---KTGTIITVELPDG----FMKLLAMTPIGKETFFINNDKQKMNAT 267
            ++  N  +   +   K      V LP+         L    +G   F     ++ +   
Sbjct: 179 DVRVVNGIAKSVRIIGKGNRERLVPLPEAFGQVLGAWLQDRAVGDFVFAKAPGEKPLGPH 238

Query: 268 QFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
               + +    +AG++K  + H +R   AT   +AGA   ++ A  G   +   + YT  
Sbjct: 239 AVRAYLRRLIERAGIDKPVTPHKLRHTYATRLLEAGAELVDIQALLGHVDLSTTQIYTH- 297

Query: 326 ADRIRLG 332
               R+ 
Sbjct: 298 VSEERMA 304


>gi|82543521|ref|YP_407468.1| integrase for prophage [Shigella boydii Sb227]
 gi|81244932|gb|ABB65640.1| putative integrase for prophage [Shigella boydii Sb227]
          Length = 214

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 33/194 (17%), Positives = 57/194 (29%), Gaps = 14/194 (7%)

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200
             ++ W   + YV  NPC  V + K K       T ++ Q   S         +A E   
Sbjct: 3   SRVYSWGYERGYVKANPCAGVSKFKAKNRERYV-TDKEYQAVLSVAPL--PVFIAMEIAY 59

Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP--IGKETFFIN 258
               R SD      + + N+   I+  KTG              +              N
Sbjct: 60  LCAARVSDVLSLKWEQIGNDGIFIQQGKTGKKQIKAWSPRLQAAIEKAKQLPTSAYVISN 119

Query: 259 NDKQKMNATQFSIWFKAKATKAG------VNKSAHGVRKFSATISADAGATAHELMATYG 312
               +     F+  +     +AG       + + H + K       +   ++ +     G
Sbjct: 120 QYGNRYMYKGFNEMWVEARNRAGKISGILTDFTFHDL-KAKGISDYE--GSSRDKQLFSG 176

Query: 313 WKTVDQAETYTKGA 326
            KT  Q   Y +  
Sbjct: 177 HKTEGQVLIYDRKV 190


>gi|291516261|emb|CBK69877.1| Site-specific recombinase XerD [Bifidobacterium longum subsp.
           longum F8]
          Length = 319

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 36/289 (12%), Positives = 92/289 (31%), Gaps = 15/289 (5%)

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
           P ++ +  + L++ +  +      +  +   +ES    + +        +I +  +R  +
Sbjct: 34  PTQETSAPQNLLTLFLTAKEVEGCSPKTIAYYESTLQHMTQALA-KPCTRINSDDLREYL 92

Query: 124 ESRKHTPSS----AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
              ++   +           M   F W   ++Y+  +P   + R K         + E++
Sbjct: 93  NRYENERHAGKVTIDNIRRIMSSFFAWLEDEDYIVKSPVRRIHRVKTAVMAKEVLSDENL 152

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELP 238
           +  +       +     + L  +G+R  +     +  +       + T K      V   
Sbjct: 153 ETLRDRCGT-LRDLAIVDILASTGMRVGELVGLNIADVNLQERECLVTGKGNKQRPVYFD 211

Query: 239 DG----FMKLLAMTPIGKETFF--INNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRK 291
                     L          F  +N D  +++        +     AG+++   H  R+
Sbjct: 212 ARTKLHLTAYLQSRNDSNPALFVALNGDGDRISIGGIESRLRQLGKDAGIHRVHPHKFRR 271

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
             AT + D G    ++    G   +D    Y    ++  +   + R + 
Sbjct: 272 TLATHAIDKGMPIEQVQKLLGHARIDTTMHYA-MVNQNNVKASHRRYLE 319


>gi|226949169|ref|YP_002804260.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum A2 str. Kyoto]
 gi|226843724|gb|ACO86390.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum A2 str. Kyoto]
          Length = 330

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 46/294 (15%), Positives = 97/294 (32%), Gaps = 47/294 (15%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFD----QIIRKSGDFDYRKITTKHIRSGVESRKH-- 128
           I E+       +L+  + +S+E         +  + G  D +K+T K IR  +   K+  
Sbjct: 8   IDEFMIYCESKNLSKKTMMSYEQTLRLFTKYLEEEKGIGDVKKVTEKMIREYINYTKNRG 67

Query: 129 --------------TP------------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162
                         TP            ++   ++ +++V F + + Q Y+  +   +++
Sbjct: 68  KYTIVGDKETLKTNTPEMRKDYGKKVSITTINNYIRNIKVFFNFLLEQSYIKKDVVKNIK 127

Query: 163 RPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218
           + K + +     T     +             +  L    LL +G+R  +     V+++ 
Sbjct: 128 QFKNQRKAKEFITDSQFAELLRHIDTTKFHERRDHLCIMLLLDTGMRIGECLEIKVENID 187

Query: 219 NNIFSI------KTQKTGTIITVE--LPDGFMKLLAMTP--IGKETFFINNDKQKMNATQ 268
            N  SI         K    +     +     + L      +  +  F       +    
Sbjct: 188 MNYRSILLPAEDTKGKRDRYVYFSQVMNKELRRWLQYKDRYVESDYLFCTTKGTPVLIRT 247

Query: 269 FSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
           F    K  A +AG+ +   H +R   A     +G + + L    G  +V   E 
Sbjct: 248 FERKLKDYANRAGLKDIHPHQLRNNFAKRFLMSGGSIYILSQVLGHSSVKVTEQ 301


>gi|227818829|ref|YP_002822800.1| transposase number 1 for insertion sequence NGRIS-16a
           [Sinorhizobium fredii NGR234]
 gi|227819104|ref|YP_002823075.1| transposase number 1 for insertion sequence NGRIS-16b
           [Sinorhizobium fredii NGR234]
 gi|227819152|ref|YP_002823123.1| transposase number 1 for insertion sequence NGRIS-16c
           [Sinorhizobium fredii NGR234]
 gi|227819580|ref|YP_002823551.1| transposase number 1 for insertion sequence NGRIS-16d
           [Sinorhizobium fredii NGR234]
 gi|227819591|ref|YP_002823562.1| transposase number 1 for insertion sequence NGRIS-16e
           [Sinorhizobium fredii NGR234]
 gi|227820371|ref|YP_002824342.1| transposase number 1 for insertion sequence NGRIS-16f
           [Sinorhizobium fredii NGR234]
 gi|227822209|ref|YP_002826180.1| putative transposase number 1 for insertion sequence NGRIS-16h
           [Sinorhizobium fredii NGR234]
 gi|227823694|ref|YP_002827667.1| putative transposase number 1 for insertion sequence NGRIS-16
           [Sinorhizobium fredii NGR234]
 gi|36959087|gb|AAQ87512.1| Putative integrase/recombinase Y4QK [Sinorhizobium fredii NGR234]
 gi|227337828|gb|ACP22047.1| putative transposase number 1 for insertion sequence NGRIS-16a
           [Sinorhizobium fredii NGR234]
 gi|227338103|gb|ACP22322.1| putative transposase number 1 for insertion sequence NGRIS-16b
           [Sinorhizobium fredii NGR234]
 gi|227338151|gb|ACP22370.1| putative transposase number 1 for insertion sequence NGRIS-16c
           [Sinorhizobium fredii NGR234]
 gi|227338579|gb|ACP22798.1| putative transposase number 1 for insertion sequence NGRIS-16d
           [Sinorhizobium fredii NGR234]
 gi|227338590|gb|ACP22809.1| putative transposase number 1 for insertion sequence NGRIS-16e
           [Sinorhizobium fredii NGR234]
 gi|227339370|gb|ACP23589.1| putative transposase number 1 for insertion sequence NGRIS-16f
           [Sinorhizobium fredii NGR234]
 gi|227341209|gb|ACP25427.1| putative transposase number 1 for insertion sequence NGRIS-16h
           [Sinorhizobium fredii NGR234]
 gi|227342696|gb|ACP26914.1| putative transposase number 1 for insertion sequence NGRIS-16
           [Sinorhizobium fredii NGR234]
          Length = 286

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 38/253 (15%), Positives = 93/253 (36%), Gaps = 15/253 (5%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRK--ITTKHIRSGVESRKHTPSSAIQFLTSMRV 142
            +L+  ++ S+     +  R  G    R      +  +  + S   +  +  Q + ++R 
Sbjct: 18  RNLSPATQRSYLHAVTKFSRYFGRSPDRLGLEDVRAFQVHLVSSGLSWPALNQTVCALR- 76

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202
            F + V   +  I P   +   +   +       +++ +F        + R A      +
Sbjct: 77  -FFFGVTLGHAEI-P-ERIAYARTPAKLPTILNGDEIVRFLEAVPS-LKTRTALTTAYAA 132

Query: 203 GLRCSDSCRAGVQHLQN--NIFSIKTQKTGTIITVELPDGFMKLLAM-TPIGKETFFI-- 257
           GLR +++    V ++     +  I+  K G    V L    + +L +   + +   ++  
Sbjct: 133 GLRATETVSLKVSNIDGERGVIRIEHGKGGKDRNVMLSAQLLHILRVYWKLVRPQVWLFP 192

Query: 258 -NNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWK 314
             ++ + ++        ++    AG++K  S H +R   AT   ++G     +    G  
Sbjct: 193 GRDESKPIDVQVLHSACRSARAAAGIDKRISVHTLRHSFATHLLESGTDIRIIQVLLGHN 252

Query: 315 TVDQAETYTKGAD 327
            +     YTK ++
Sbjct: 253 NLSTTARYTKVSN 265


>gi|293556237|ref|ZP_06674827.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium E1039]
 gi|291601656|gb|EFF31918.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium E1039]
          Length = 378

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 53/365 (14%), Positives = 118/365 (32%), Gaps = 55/365 (15%)

Query: 15  RTRHGKIIYYFR--KGHGRRIRLPYPHE---STFIPAYMSALTGSTPKREY-INSPRKKP 68
           R R  +  YYF      G R ++             A    L+      +Y + +  +  
Sbjct: 6   RKRGKRWYYYFEDINDDGSRKKVEKVGGDTRPEAEAALRKVLSDIDETGQYFLGTDTRVK 65

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESR- 126
             L + + EY K     +L  N+  ++     + I    G      ++   +++ + +  
Sbjct: 66  QYLDFWMEEYVK----LNLKYNTYENYRFTIKNHINGYLGKKKLTDLSPALLQNFINAEF 121

Query: 127 -----KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK-----TEGIRPWTK 176
                K T +     L +   +  +      +  NP L V+ PK +      + ++  + 
Sbjct: 122 KKGYSKKTMTITHSVLKNALNMAVY--PWGLIKQNPMLYVKIPKYEERPTTKKDLKIISL 179

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK-------- 228
           ED         EG    +      Y+G+R  + C     ++  +  +I  +K        
Sbjct: 180 EDFDHMLEITPEGHPFYIPLNIGFYTGMRVGEVCGLTWDNVDFSNGTITVEKQMVKNGGA 239

Query: 229 --------TGTIITVELPDGFMKLLAMTP--------------IGKETFFINNDKQKMNA 266
                   + +  T+ +    + +L                  I         D + +  
Sbjct: 240 WVYGTPKTSSSNRTIFIGQTLLAILKKHKKQQLENRMKYGKLYIDSNAVCTKEDGELVTP 299

Query: 267 TQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKG 325
           +      +  +    ++ + H +R   AT+  + GA   E+    G   +    +TY+  
Sbjct: 300 SVVKWNTRRISNALSLSFNFHSLRHTHATLLLENGAKMKEISERLGHSRISITMDTYSHV 359

Query: 326 ADRIR 330
            D++R
Sbjct: 360 TDKMR 364


>gi|91792496|ref|YP_562147.1| phage integrase [Shewanella denitrificans OS217]
 gi|91714498|gb|ABE54424.1| phage integrase [Shewanella denitrificans OS217]
          Length = 296

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 40/266 (15%), Positives = 90/266 (33%), Gaps = 18/266 (6%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KH 128
              L  ++  +         +  ++     +I     D    K+TT  ++         H
Sbjct: 9   FDCLYQQHLTNLTLQGKRPATIDAYSRAVRRIAAYF-DCCPDKLTTADLKRYFADLIASH 67

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           + S+       ++  ++  + Q +      LS+ +P +        T  ++    S  + 
Sbjct: 68  SWSTVKLDRNGLQFFYRHVLNQAWQW----LSIVKPPQVNHLPDILTPAEVSMVISL-TH 122

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFMKLLA 246
             + ++ F  L   GLR  ++    +  + + +    I+  K G    + LP   ++ L 
Sbjct: 123 KLRYQVCFLTLYSMGLRLGEAVSLQIGDIDSQLMQVHIRDAKGGKDRLIPLPQRTLQALR 182

Query: 247 ---MTPIGKETFFINNDKQK---MNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISA 298
               T       F   D +    M+        K   ++  ++KS   H +R   AT   
Sbjct: 183 YYWQTHRHPRYLFPGKDGKPNSLMDRGGIQKAMKKVISECHIHKSISPHNLRHSYATHLL 242

Query: 299 DAGATAHELMATYGWKTVDQAETYTK 324
           + G     +    G  +++    YT+
Sbjct: 243 EQGLDLRSVQQLLGHNSLNTTARYTR 268


>gi|166031854|ref|ZP_02234683.1| hypothetical protein DORFOR_01555 [Dorea formicigenerans ATCC
           27755]
 gi|166028307|gb|EDR47064.1| hypothetical protein DORFOR_01555 [Dorea formicigenerans ATCC
           27755]
          Length = 361

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 53/331 (16%), Positives = 112/331 (33%), Gaps = 42/331 (12%)

Query: 41  STFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFE-SYF 99
             F   Y  A+   +  +  IN          +L+     +  + +    +   F     
Sbjct: 36  PPFAKDYFRAMEPKSSAKTRINYAYDIRVFFHFLLE---NNPIYKNY---TMDQFRVQDL 89

Query: 100 DQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL 159
           ++I       +Y +    + R   E   +      + ++++R  + +  + +Y+A NP L
Sbjct: 90  ERI-EPVDIEEYMEYLKVYKREDNEMITNGERGLKRKMSALRSFYSYYFKHQYIATNPTL 148

Query: 160 SVERPKRKTEGIRPWTKEDMQQFKSFWSEG----------------SQPRLAFEFLLYSG 203
            V+ PK   + I     +++     +                    ++       LL +G
Sbjct: 149 LVDMPKLHDKAIIRLDIDEVAMLLDYVESAGEHLTGQALAYYQKTKNRDLAILTLLLGTG 208

Query: 204 LRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLA---------MTPIGK 252
           +R S+     +  +   NN  ++ T+K G+ + V   D     L          +TP+  
Sbjct: 209 IRVSECVGLNLTDVDFKNNGITV-TRKGGSQMVVYFGDEVADALENYIEADRKVITPLSG 267

Query: 253 --ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELM 308
             E  F++  +++M         K  A +   NK  + H +R    T         + + 
Sbjct: 268 HEEALFLSTQRKRMGVQAIENMVKKYARQVTPNKKITPHKLRSTYGTSLYKETGDIYLVA 327

Query: 309 ATYGWKTVDQA-ETYTK-GADRIRLGIKNSR 337
              G K V+   + Y     DR R+     +
Sbjct: 328 DVLGHKDVNTTKKHYAAIDEDRRRMAASAVK 358


>gi|160915626|ref|ZP_02077834.1| hypothetical protein EUBDOL_01633 [Eubacterium dolichum DSM 3991]
 gi|158432102|gb|EDP10391.1| hypothetical protein EUBDOL_01633 [Eubacterium dolichum DSM 3991]
          Length = 403

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 52/377 (13%), Positives = 106/377 (28%), Gaps = 71/377 (18%)

Query: 12  TKERTRHGKIIYYFRK--GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
               TR G + Y  R     G+++ L              A         +   P     
Sbjct: 11  YGTVTRKGVLYYRTRILDADGKQVSLYGTTCEELYDKEQEARRQVAEIIFHREHPTVAEY 70

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKH 128
             KWL+ +   SA    ++  +   + S   + II+  GD    ++T   IR  +    +
Sbjct: 71  CEKWLLMQ---SAK---VSPATLKGYASNMKNYIIKPLGDMYMEEVTADDIRLALIPLSN 124

Query: 129 TPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQQFKSFW 186
              S    +  +     + A R + +  NPC  +  +  + T+     T + ++      
Sbjct: 125 KSESLHNTVNMLLKCIFYSAERSQLLEYNPCEGISAKGGKPTQKKDSLTDQQVEVLLETV 184

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-------------------QNNIFSIKTQ 227
             G  P L     LY+GLR  ++       +                      + S   +
Sbjct: 185 K-GLPPYLFTMIGLYAGLRREEALALQWDCVFLDAPTPYISVRRAWRSEHNRPVISTTLK 243

Query: 228 KTGTIITVELPDGFMKLLA--MTPIGKETFFINNDKQKMNATQFSIWFKAKATK------ 279
                  + +P   +  L         E    +++ Q ++ +QF   ++    +      
Sbjct: 244 TKAARRDIPIPKCLVNCLREAKAASKSEYVIADSEGQPLSYSQFKRVWQYIVVRSTKERT 303

Query: 280 -------------------------------AGVNKSAHGVRKFSATISADAGATAHELM 308
                                             + + H +R    T    AG     + 
Sbjct: 304 YYKYVNGQSIKYTVQPSLGGHQKNNPNIVYSLDFDVTPHLLRHTYITNLLYAGVDPKTVQ 363

Query: 309 ATYGWKTVDQA-ETYTK 324
              G +      + Y +
Sbjct: 364 YLAGHENSKTTMDIYAR 380


>gi|37522020|ref|NP_925397.1| integrase/recombinase [Gloeobacter violaceus PCC 7421]
 gi|35213019|dbj|BAC90392.1| glr2451 [Gloeobacter violaceus PCC 7421]
          Length = 289

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 39/255 (15%), Positives = 91/255 (35%), Gaps = 14/255 (5%)

Query: 85  GSLAVNSRISFESYFDQIIR--KSGDFDYRKITTK--HIRSGVESRKHTPSSAIQFLTSM 140
            SLA N+  +++   ++  R  +S   D++       H  + +  + HTP SA + L+++
Sbjct: 18  RSLAGNTLKAYQRDLEEFARFVESEHLDWQTFGATGTHHFAQILQKTHTPRSAARKLSAL 77

Query: 141 RVLFKWAVRQEYVAINP-CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199
           R  ++ A+ Q +    P   +   P  +    R  +    ++     +         E L
Sbjct: 78  RTFYRHALVQGWAGGVPPACTRTLPSAERGLPRILSVAQTEKLIESAASPL-ESAVLELL 136

Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKETF--- 255
             +GL+  + C   V+ +      +  Q        V + +  +  +      +      
Sbjct: 137 YATGLKAGELCELRVRDVAFAEAYLSVQPAASQPRVVPVGEPALAAVEAYLGSEPVLPER 196

Query: 256 --FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATY 311
             F+    + +N        +  A ++ ++   +   +R   A    + GA    +    
Sbjct: 197 WLFVGRQNRPLNRFHIYRIVREAAARSAIDWPVTPDTLRHSFAVHLLEGGADLATVRELL 256

Query: 312 GWKTVDQAETYTKGA 326
           G  ++     YT+ A
Sbjct: 257 GHASLATTGIYTRLA 271


>gi|307720464|ref|YP_003891604.1| integrase family protein [Sulfurimonas autotrophica DSM 16294]
 gi|306978557|gb|ADN08592.1| integrase family protein [Sulfurimonas autotrophica DSM 16294]
          Length = 278

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 35/268 (13%), Positives = 96/268 (35%), Gaps = 33/268 (12%)

Query: 75  ISEYRKSA-----HWGSLAVNSRISFESYF------DQIIRKSGDFDYRKITTKHIRSGV 123
           I++Y+K        +   +  +  ++           +I+++ G   +  +  +   +G+
Sbjct: 5   INKYKKEFLVSLEEYRGYSELTVKTYADVLGEAFQYIEIVQEDGHTVFNLMPYRIYIAGL 64

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEY---VAINPCLSVERPKRKTEGIRPWTKEDMQ 180
            ++     +  + L+++R   ++   Q     +  +     E  K      +P +   + 
Sbjct: 65  NAK-----TISKKLSAIRSFVEFLNEQGLHVALQAD-----ESIKVAKTLPKPVSHAHI- 113

Query: 181 QFKSFWSEGSQPRLAFEFLLYS-GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP- 238
             ++      Q +L    +LY+ GLR S+     + ++ N    +   K      + L  
Sbjct: 114 -LEALSQSDLQEKL-LAVMLYTLGLRISELASLELHNITNEWIRVI-GKGNKQRDIPLLG 170

Query: 239 --DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATI 296
                +     T + K+ F    + ++++             +  +  + H +R   A+ 
Sbjct: 171 TTRALIDEYLSTFVVKK-FLFEKNGERLSENSLRYMITKIFKRVALKVTPHQLRHSYASS 229

Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324
             + GA   ++    G  ++   + YTK
Sbjct: 230 LLNGGAPIVDVSELLGHSSMATTQIYTK 257


>gi|291530097|emb|CBK95682.1| Site-specific recombinase XerD [Eubacterium siraeum 70/3]
          Length = 338

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 32/238 (13%), Positives = 80/238 (33%), Gaps = 27/238 (11%)

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKE------- 177
           + + P +  + L +++    + + ++ +  NP   +E   K      +    +       
Sbjct: 93  KSYKPKTVKRKLATLKAFTHYLLIRDIIDCNPFDKIETSIKEPVILPKTIPLDTIGEILC 152

Query: 178 ----DMQQFKSFWSEGSQPRLA--FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
                +++  + + + S  R A   E L  +G R ++ C    Q +     S+K    G+
Sbjct: 153 FAYTQIEKSNTDYKKNSAIRNAAVLELLFATGARVAEICNLHSQDVDFIGKSVKLYGKGS 212

Query: 232 IITVELPDGFMKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281
              + +P     +L +                 FF+N   +++          +     G
Sbjct: 213 KERI-IPIENTSVLTILSDYYFIHEEKISDCGYFFVNKYGKRLTEQSVRCMINSYCQTCG 271

Query: 282 V--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
           +  + + H  R   AT+  +       +    G  ++   + YT      +  I  ++
Sbjct: 272 ISMHITPHMFRHSFATLLLEQDVDIRYIQKLLGHSSITTTQIYTHVTSAKQKEIIKTK 329


>gi|254885206|ref|ZP_05257916.1| integrase [Bacteroides sp. 4_3_47FAA]
 gi|254837999|gb|EET18308.1| integrase [Bacteroides sp. 4_3_47FAA]
          Length = 430

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 48/284 (16%), Positives = 97/284 (34%), Gaps = 29/284 (10%)

Query: 78  YRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVESRKHTPSSA 133
           + KSA        +++ +  S    +       D++ +T    +     +  + +  ++ 
Sbjct: 135 FAKSAIDNSDKKQSTKDNLHSTLAVLHDFRSGLDFKDLTYTFLRDFEQYLREKGNAVNTI 194

Query: 134 IQFLTSMRVLFKWAVRQEYVAIN--PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
            + +  +R L   A+ Q Y+  +  P    +  K++       T +++++ ++   E   
Sbjct: 195 AKHMRQLRTLVNEAINQGYMHADAYPFRKYK-IKQEKGRHEFLTPDELKKLETVEVEEES 253

Query: 192 PR---LAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDGFMKL 244
            R    AF F  Y+GLR SD C+    +             + KTG  I + L    +  
Sbjct: 254 MRHVLDAFLFCCYTGLRYSDFCQLSPANFIKVNGKRWLHFTSVKTGVEIRLPLH--LLFE 311

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGA 302
                I      I +       ++ +   +  A   G+ K    H  R   AT+    G 
Sbjct: 312 SRALGILDRYPDIGSLASLPCNSEVNKQLRKLAGLCGIKKRITYHVSRHTCATLLVHQGV 371

Query: 303 TAHELMATYGWKTVDQAETYT-----------KGADRIRLGIKN 335
               +    G  +V   + Y+           K   R R  +K 
Sbjct: 372 AITTVQKLLGHTSVKTTQIYSEVLSSTIVRDLKNVQRKRKKVKM 415


>gi|167751075|ref|ZP_02423202.1| hypothetical protein EUBSIR_02060 [Eubacterium siraeum DSM 15702]
 gi|167655993|gb|EDS00123.1| hypothetical protein EUBSIR_02060 [Eubacterium siraeum DSM 15702]
          Length = 338

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 32/238 (13%), Positives = 80/238 (33%), Gaps = 27/238 (11%)

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKE------- 177
           + + P +  + L +++    + + ++ +  NP   +E   K      +    +       
Sbjct: 93  KSYKPKTVKRKLATLKAFTHYLLIRDIIDCNPFDKIETSIKEPVILPKTIPLDTIGEILC 152

Query: 178 ----DMQQFKSFWSEGSQPRLA--FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
                +++  + + + S  R A   E L  +G R ++ C    Q +     S+K    G+
Sbjct: 153 FAYTQIEKSNTDYKKNSAIRNAAVLELLFATGARVAEICNLHSQDVDFIGKSVKLYGKGS 212

Query: 232 IITVELPDGFMKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281
              + +P     +L +                 FF+N   +++          +     G
Sbjct: 213 KERI-IPIENTSVLTILSDYYFIHEEKISDCGYFFVNKYGKRLTEQSVRCMINSYCQTCG 271

Query: 282 V--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
           +  + + H  R   AT+  +       +    G  ++   + YT      +  I  ++
Sbjct: 272 ISMHITPHMFRHSFATLLLEQDVDIRYIQKLLGHSSITTTQIYTHVTSAKQKEIIKTK 329


>gi|251783530|ref|YP_002997835.1| DNA integration/recombination/inversion protein [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
 gi|242392162|dbj|BAH82621.1| DNA integration/recombination/inversion protein [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
          Length = 387

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 61/321 (19%), Positives = 106/321 (33%), Gaps = 52/321 (16%)

Query: 50  ALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGD 108
           A+ G T K +   +  K+ T L W    Y+ +     +  NSR S E      I+   GD
Sbjct: 55  AMNGYTVKEKPTVTTYKELTALWW--ESYKNT-----IKPNSRQSMEGIVRLHILPAFGD 107

Query: 109 FDYRKITTKHIRSGVESRKHTPSS------AIQ-FLTSM-RVLFKWAVRQEYVAINPCLS 160
               ++TT  I+  V    +  +       A   FL ++ R + ++ V  + +  NP   
Sbjct: 108 CKLSRLTTPVIQQQVNKWANNANKGIKGAYANYSFLNNINRRILQYGVTMQVIEHNPARD 167

Query: 161 VERPKRKTEGIRP---WTKEDMQQFKSFWS-------EGSQPRLAFEFLLYSGLRCSDSC 210
           V  P+++         ++ ++++QF ++         E     + ++ LL +G R  +  
Sbjct: 168 VIIPRKQNNKEHKVKFFSNQELKQFLNYLDDLDLSSYENFFDYVLYKTLLATGCRIGEVL 227

Query: 211 RAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ-------- 262
                 +     +IK  KT               L    I + T  +    +        
Sbjct: 228 ALEWSDIDLEKGTIKVSKTLNRYQETNTPKSKAGLRDIEIDRATVLLLKQYKNRQQVLSW 287

Query: 263 -----------KMNATQ-----FSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAH 305
                                      +     AGV + S HG R   ATI   AG  A 
Sbjct: 288 DLGRSETIVFTPFTTKYAYACLLRKRLQKHFKAAGVPDISFHGFRHTHATIMLYAGIEAK 347

Query: 306 ELMATYGWKTVDQA-ETYTKG 325
           +L    G   +     TY   
Sbjct: 348 DLQYRLGHSNISMTLNTYVHA 368


>gi|310816227|ref|YP_003964191.1| site-specific tyrosine recombinase XerC [Ketogulonicigenium vulgare
           Y25]
 gi|308754962|gb|ADO42891.1| site-specific tyrosine recombinase XerC [Ketogulonicigenium vulgare
           Y25]
          Length = 307

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 43/275 (15%), Positives = 84/275 (30%), Gaps = 23/275 (8%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVESRK 127
           +WL+         G+  V  R    ++   +    G         +I    +R+ +   +
Sbjct: 12  RWLVHSGAIEGKAGATLVAYRHDVSTFLTFMTLHHGGPQGFAAIAQIEVADMRAWMAQMR 71

Query: 128 HTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
            T     S  + L++++  + W   +E       L+   PK +    RP   +D ++   
Sbjct: 72  GTGLSSRSLARALSAVKGFYTWLAAREGFEPTAVLAARAPKFQRNLPRPLEVDDARRLMD 131

Query: 185 FWSE-------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237
                       ++       L  SGLR S++     +          T K G    V +
Sbjct: 132 RVEVQSNEPWVAARDLAVITLLYGSGLRISEALSLTGEDYPLPDVLRMTGKGGKQRLVPV 191

Query: 238 PDGFMKLLAM-------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HG 288
                  +          P+     F       ++        +    + G+  SA  H 
Sbjct: 192 LPIAAAAVKDYVRRTPYAPVAGAPLFRGVRGGALSPRIIQKMIEQVRLQLGLPASATPHA 251

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           +R   AT    AG     +    G  ++   + YT
Sbjct: 252 LRHSFATHLLAAGGDLRSIQELLGHASLSTTQAYT 286


>gi|162329627|ref|YP_471302.2| site-specific tyrosine recombinase XerD [Rhizobium etli CFN 42]
          Length = 317

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 48/274 (17%), Positives = 83/274 (30%), Gaps = 34/274 (12%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTK-----HIRSGVESRKHTPSSAIQFLTS 139
              A N+  S+E   D +         R             + +  +   PSS  + L +
Sbjct: 20  RGAAANTLQSYERDLDDVRSFLNGRSIRLTEAASADLAAYLASLARQGFKPSSQARRLAA 79

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-------SEGSQP 192
           MR  +K+   +     +P   ++ PK+     +    E++ +  S         + G   
Sbjct: 80  MRQFYKFLYAEGLRTDDPTGVLDAPKKGRPLPKTMGVEEVGRLLSQAQTEADDPAPGQLQ 139

Query: 193 R----LAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLA- 246
           R       E L  +G+R S+      + L     F +   K      V L    +  L  
Sbjct: 140 RRRMLALLELLYATGMRVSELVSLPARVLDQEGRFLMIRGKGNKERLVPLSHSAIAALKS 199

Query: 247 ------------MTPIGKETFFINNDKQKM-NATQFSIWFKAKATKAGVN---KSAHGVR 290
                         P      F    K+       F+   K  A +AG+     S H +R
Sbjct: 200 YGRLLAADAAAAKEPQESPWLFPAASKEGYLPRQVFARDLKNLAIRAGLTPSLISPHVMR 259

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              A+     GA    +    G   +   + YT 
Sbjct: 260 HAFASHLLANGADLRVVQELLGHSDISTTQIYTH 293


>gi|288905839|ref|YP_003431061.1| integrase [Streptococcus gallolyticus UCN34]
 gi|288732565|emb|CBI14137.1| putative integrase [Streptococcus gallolyticus UCN34]
          Length = 376

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 53/350 (15%), Positives = 114/350 (32%), Gaps = 64/350 (18%)

Query: 48  MSALTGSTPKREYINSPRK------KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ 101
             A+     +       +K      +  T+K L  E+        +  ++  +     + 
Sbjct: 36  TRAVQAEAKRILEDKISKKNSVRLLQAETVKELYEEWLVIRK-MEVKPSTLQTQMGIMNG 94

Query: 102 IIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV 161
            I+  G+    +I +  +++ + ++  +          +  LF +A    Y+  NP   V
Sbjct: 95  FIKIFGNEKLTRIKSAALQTYLLAKDWSYGYRNLVKVYLSSLFDYAKTVGYLVDNPMDRV 154

Query: 162 ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF----------------EFLLYSGLR 205
             PK K       T+E+++  +  +    Q RL                  EFL  +GLR
Sbjct: 155 VLPKYKV------TQEEIELKREHYLSRQQIRLYLNILDTEGKNPIFNILVEFLYLTGLR 208

Query: 206 CSDSCRAGVQHLQ--NNIFSIK------TQKTGTIITVE-----------------LPDG 240
             ++       +     I +++       +K+   IT                   L D 
Sbjct: 209 IGEAQALMWSDIDFETKILTVRHTVQRANKKSDYRITTPKTIHSYRKVYFNSRVVKLLDE 268

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK------SAHGVRKFSA 294
              L ++    K+  F N          F+++ +       + K      ++H  R    
Sbjct: 269 LKCLTSVV-SDKDLVFTNGRGDFFGLDAFNLYIQRYFDNQKIGKPDNFKLTSHVFRHSHV 327

Query: 295 TISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVV 343
           ++ A+ G    E+M   G        + YT   +  ++   +  ++ SV 
Sbjct: 328 SLLAELGFHVREIMERVGHSDEKTTIQIYTHVTE--KMKQNSFEKLESVA 375


>gi|197250677|ref|YP_002147601.1| integrase [Salmonella enterica subsp. enterica serovar Agona str.
           SL483]
 gi|205360077|ref|ZP_02834436.2| integrase [Salmonella enterica subsp. enterica serovar Weltevreden
           str. HI_N05-537]
 gi|197214380|gb|ACH51777.1| integrase [Salmonella enterica subsp. enterica serovar Agona str.
           SL483]
 gi|205341129|gb|EDZ27893.1| integrase [Salmonella enterica subsp. enterica serovar Weltevreden
           str. HI_N05-537]
          Length = 336

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 55/305 (18%), Positives = 110/305 (36%), Gaps = 19/305 (6%)

Query: 26  RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG 85
           R   G+RIR  +  +S     Y   +  +   +E+ + P      L  LI+ +     + 
Sbjct: 24  RGTSGKRIRRKFNRKSE-AQTYEKYVLTNFHDKEWQDKP-ADRRLLSDLIALWW---SYH 78

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFLTSMRV 142
               N   S++   ++I R+ G+    ++T   +     SR H   +  +  +   +M  
Sbjct: 79  GKNHNYGDSYKKRLEKINREMGEPRVYELTRNFLMKYRASRLHDGVSAGTVNRDFCTMSS 138

Query: 143 LFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201
           +F+  +  +E+   NP   V + + +   +   ++E+++      +     R      L 
Sbjct: 139 MFRLLIDMEEFHHENPFHKVRKLRLENTEMSFLSEEEIRDLLMALT--GDDRRVVVLCLN 196

Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK 261
           +G R  ++     +H+ +N  +    KTG   TV +       +     GK   F  N  
Sbjct: 197 TGARWGEASNLKAEHVISNRVTFVKTKTGPARTVPISQEIADYILTRKSGK--LFDTNY- 253

Query: 262 QKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
                 +     +         ++ H +R   AT     G     L    G  T++Q  T
Sbjct: 254 -----ERVRDVLRKVKPDLPRGQALHVLRHTFATHFMINGGNIITLQRILGHTTIEQTMT 308

Query: 322 YTKGA 326
           Y   A
Sbjct: 309 YAHFA 313


>gi|209965542|ref|YP_002298457.1| tyrosine recombinase XerC, putative [Rhodospirillum centenum SW]
 gi|259710436|sp|B6IPE2|XERC_RHOCS RecName: Full=Tyrosine recombinase xerC
 gi|209959008|gb|ACI99644.1| tyrosine recombinase XerC, putative [Rhodospirillum centenum SW]
          Length = 341

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 47/268 (17%), Positives = 89/268 (33%), Gaps = 30/268 (11%)

Query: 85  GSLAVNSRISFESYF--------DQIIRKSGDFDYRKITTKHIRSGVESRKHTPS---SA 133
              + ++  S+ +          +   R  G  D   +     R+ + +R    +   + 
Sbjct: 31  RGASTHTLRSYRADLAGFLAFVAEHRGRPPGLNDLGALDLGAFRAWLAARAADGAGAATR 90

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSV-ERPKRKTEGIRPWTKEDMQQFKSFWS----- 187
            + ++ +R  F+WA R   +  NP +++   PK +    RP   +D        +     
Sbjct: 91  SRGVSGVRSFFRWADRSGLL-HNPAIALLTAPKAQRPLPRPLAADDAALLLEEAAAVPEA 149

Query: 188 --EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKL 244
              G + R  F  L   GLR S++       L     S++   K G    V +     + 
Sbjct: 150 PWIGLRDRALFTLLYGCGLRISEAIGLNRSDLPAGAASVRVLGKGGKQRDVPVLPAVREA 209

Query: 245 ----LAMTPIGKE---TFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSAT 295
               LA  P G       F+     +++        +      G+  S   H +R   AT
Sbjct: 210 VAAYLAAVPWGGGRAAPLFVGAKGDRLSPDVARRQMRHLRALLGLPDSTTPHALRHSFAT 269

Query: 296 ISADAGATAHELMATYGWKTVDQAETYT 323
                GA    +    G  ++   + YT
Sbjct: 270 HLLGGGADLRAIQDLLGHASLSTTQRYT 297


>gi|222150032|ref|YP_002550989.1| site-specific tyrosine recombinase XerC [Agrobacterium vitis S4]
 gi|221737014|gb|ACM37977.1| site-specific tyrosine recombinase XerC [Agrobacterium vitis S4]
          Length = 322

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 42/275 (15%), Positives = 85/275 (30%), Gaps = 29/275 (10%)

Query: 85  GSLAVNSRISFES----YFDQIIRKSGDFD----YRKITTKHIRSGVESRKHTPSSAI-- 134
             LA ++  ++E     +   +    G        + +    +R+ + SR+   + A   
Sbjct: 38  RRLADHTLTAYERDTRQFLGFLTGYFGGPPSIDDIKALRPSDLRAFLSSRRKEGAGARSL 97

Query: 135 -QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM-------QQFKSFW 186
            + L  +R L ++  R+  V      ++  PK+     +P +            Q     
Sbjct: 98  GRHLAGVRSLLRYLERKGLVNAAGAGAIRSPKQPKSLPKPLSAAQALTVVAAETQLNEEP 157

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-VELPDGFMKLL 245
              ++    F  L   GLR S++       +     +++    G     V L     + +
Sbjct: 158 WIAARDAAVFALLYGCGLRISEALDLTPADIVATTTTLRVTGKGNKTRLVPLLPIVRQAV 217

Query: 246 AMTP-------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATI 296
                         E  F      K+         +   +  G+    + H +R   AT 
Sbjct: 218 ESYQSLCPYHLPATEPLFRGARGGKLQQGIIQREMQRLRSALGLPDTATPHALRHSFATH 277

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
               G     +    G  ++   + YT G D  RL
Sbjct: 278 LLSGGGDLRTIQELLGHASLSTTQIYT-GVDSARL 311


>gi|126436488|ref|YP_001072179.1| phage integrase family protein [Mycobacterium sp. JLS]
 gi|126236288|gb|ABN99688.1| phage integrase family protein [Mycobacterium sp. JLS]
          Length = 387

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 51/320 (15%), Positives = 104/320 (32%), Gaps = 34/320 (10%)

Query: 55  TPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRK 113
           TP  E     + +  TL+     +  +     LA  +R ++  + D  I+   GD    +
Sbjct: 73  TPPAERAARRQAEKLTLRTYAKTWLDNK--TKLARRTRDNYRGHLDNHILPVLGDLGLAE 130

Query: 114 ITTKHIRSGVESRKHTPSSAI-QFLTSMRVLFKWAVRQEYVAINPC--LSVERPKRKTEG 170
           IT +H+R+          +   Q    +  +F  AV  + +  NPC      + K     
Sbjct: 131 ITPEHVRTWFAGLGTEHDTRNAQAYAILNGVFNTAVADDLIERNPCRIKGAAQVKHAKRS 190

Query: 171 IRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK-- 228
           +       + +  +   +    RLA     +  LR  +        +  +  +++ ++  
Sbjct: 191 VVLLDAAQLTELAAAMPD--DARLAVLLAGWCALRKGEVFALRRCDIAADGSTVRIERAV 248

Query: 229 --------------TGTIITVELPDGFM-----KLLAMTPIGKETFFINND--KQKMNAT 267
                           +   V +P          L      G E                
Sbjct: 249 TYREGKFEVGPTKTRESRRVVSVPPHVRPAVVDHLARHVGEGDEALVFTEPSTGSFAGEK 308

Query: 268 QFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           +F   ++A     G      H +R     ++A AGAT  E+M   G  + + A  Y   A
Sbjct: 309 RFRTAWEAAREAIGQPQLHFHDLRHAGGVMAAQAGATLREVMDRLGHTSPNMAMRYQHTA 368

Query: 327 DRIRLGIKNSRRISSVVDSD 346
           +        + ++S++  ++
Sbjct: 369 EGR--AAALADKLSALAATN 386


>gi|283771192|ref|ZP_06344083.1| integrase [Staphylococcus aureus subsp. aureus H19]
 gi|283459786|gb|EFC06877.1| integrase [Staphylococcus aureus subsp. aureus H19]
          Length = 390

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 63/385 (16%), Positives = 129/385 (33%), Gaps = 62/385 (16%)

Query: 17  RHGKIIYYFRK---GHGRRIRLPYPHESTF----IPAYMSALTGSTPKREYINSPRKKPT 69
           + G   + +R          +  Y   S F       + + +     +     +P    +
Sbjct: 6   KRGNT-WRYRISLGKDAETGKYKYISNSGFKRKSDAKHHAEMVERQLRNGDYIAP--STS 62

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           T K +  ++  S +   + V+S  + E   +  I +  +   + I     +  V      
Sbjct: 63  TFKQVADDWI-SQYANEVKVSSVRAREKAINHAIERFNNKPIQTINKHEYQRFVNDISAQ 121

Query: 130 PSSA--IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK--------TEGIRP-WTKED 178
            S       + S  ++FK+A   + + I P   ++RPK+K        TE  +    K++
Sbjct: 122 YSKNYVDSIIASTNMIFKYAYDMKLIRIMPSEGIKRPKKKISVEELEDTEIHKKFLEKDE 181

Query: 179 MQQFKSFWSEGSQPRLAFEF---LLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ------ 227
           + QF         P+ +FE    L Y+G+R  +        +   NN  +I         
Sbjct: 182 LFQFLEVAKNHHSPQNSFEVFCTLAYTGMRAGELLALKWSDIDFENNTINITKTYYNPNN 241

Query: 228 ----------KTGTII-TVELPDGFMKLLAMTP------------IGKETFFINNDKQKM 264
                     KT + I  + +    +KLL                +     F + +   +
Sbjct: 242 NKKQFQILTPKTESSIGKISVDPHVIKLLKNYKVDVQDTWKNELYVDNNFVFTDVNGYPL 301

Query: 265 NATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE- 320
              +  +W KA   K  +     S H  R     +  +AG    E+      K ++    
Sbjct: 302 VIKKLQLWIKAILKKTDITNKQISTHSFRHTHCALLIEAGVHIKEIQERLRHKDINTTMN 361

Query: 321 TYTKGADRIRLGIKNSRRISSVVDS 345
            Y K  +  +     S++ S ++++
Sbjct: 362 IYAKITNSYKK--DASQKFSKLMEN 384


>gi|144899499|emb|CAM76363.1| phage integrase [Magnetospirillum gryphiswaldense MSR-1]
          Length = 427

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 50/308 (16%), Positives = 111/308 (36%), Gaps = 24/308 (7%)

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFE-SYFDQIIRKSGDFDYR 112
              K E   +  K   T +     + +      LA ++++ ++ + F Q      +    
Sbjct: 95  QIKKAEKQVNEEKAANTFRVAAERFMRQHVEPRLAASTKMDYKWALFGQDTAAWANKPVD 154

Query: 113 KITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170
            IT   +R  +++   + +P+ A + L  +   F W   ++ + + P + ++ P  K+ G
Sbjct: 155 SITRADVRRALDATIERGSPAGANKLLAYLSKFFNWCAERDLLEVPPTIRIKPPSPKSVG 214

Query: 171 IRPWTKEDM-QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-------IF 222
            R     ++   + +F +EG      F+ LL +G R +++    +  + +          
Sbjct: 215 ERTLNHAEVADVWAAFEAEGGLFCDLFKLLLLTGQRRTETAGMRLSEISDLDGEKPVWEI 274

Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI-------WFKA 275
                K      V L    + ++   PI  +  F+         + +S        W   
Sbjct: 275 PGNRTKNSRPHAVPLSPQVVAIIKGRPIVGDLGFLLTTTGTTGTSGYSNAKERVDAWIAK 334

Query: 276 KATKAG----VNKSAHGVRKFSATISADA-GATAHELMATYGWKTVDQAETYTKGADRIR 330
           +  +AG       + H +R+   T+  +  G   H + A     +   A+    G     
Sbjct: 335 RREEAGEQPMPRWTLHDLRRTMVTMMNEHVGIAPHVVEACVNHVS-GMAKAGVAGVYNKA 393

Query: 331 LGIKNSRR 338
           L + + RR
Sbjct: 394 LYMDDRRR 401


>gi|329117413|ref|ZP_08246130.1| site-specific recombinase, phage integrase family [Streptococcus
           parauberis NCFD 2020]
 gi|326907818|gb|EGE54732.1| site-specific recombinase, phage integrase family [Streptococcus
           parauberis NCFD 2020]
          Length = 362

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 56/343 (16%), Positives = 111/343 (32%), Gaps = 35/343 (10%)

Query: 11  VTKERTRHGKIIY----YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
           +   +  +GK  Y    Y     G++  +      T   A  S +       E      +
Sbjct: 3   IESYKKSNGKTYYKFLLYIGIVDGKKKYIRRSGFETKAKAKASLINLQAELSEP-----Q 57

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
              T   L +++ K             +  +  + I+ K  +     IT   I+   E  
Sbjct: 58  TNMTFGKLTNQWLKEYEKTVQGSTYLKTERNINNHILPKLSNVKIGDITPLLIQQLTEQW 117

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR---PWTKEDMQQFK 183
            +      + L  +R +   A+R  Y+  NP L +  PK K E  +    ++ ++++ F 
Sbjct: 118 CYDLKYGAKILGIVRNILNLAIRYGYLNSNPALPITPPKIKRERKKNNNFYSLDELKIFL 177

Query: 184 SFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--------------TQ 227
               E         F  L ++G+R  +        L NN  +I               T+
Sbjct: 178 KLVDETDDIEKIALFRLLAFTGIRKGELLALTWDDLNNNTLTINKAVTRTFTGLEIDVTK 237

Query: 228 KTGTIITVELPDGFMKLLAMT----PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV- 282
              +   + L D  +++L       P     F  +     M  +    W     +   + 
Sbjct: 238 TKSSDRLISLDDETVEILNELHETFPTSTLMF-QSESGGIMTPSLPRKWLLQLTSDTKLP 296

Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTK 324
             + HG R   A++  ++G +  ++    G   +      YT 
Sbjct: 297 PITIHGFRHTHASLLFESGLSLKQVQHRLGHGDLQTTMNVYTH 339


>gi|227431405|ref|ZP_03913455.1| bacteriophage integrase [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
 gi|227352833|gb|EEJ43009.1| bacteriophage integrase [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
          Length = 375

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 55/347 (15%), Positives = 113/347 (32%), Gaps = 46/347 (13%)

Query: 16  TRHGKII----YYFRKGHGRRIRLPYPH------ESTFIPAYMSALTGSTPKREYINSPR 65
           ++HGK+     Y  R   G + R              +    ++  +    K     +P 
Sbjct: 8   SKHGKVYEVVGYIGRHQDGTQARAKKRGFDSKRSAQQWFNNEVALFSNGQSKYNKKTTPN 67

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE 124
               T+K L   + ++    ++  ++     + F+  II   GD     I    ++  + 
Sbjct: 68  V--MTVKELYDMWLETYQ-HTVEESTLNKTMNVFNVHIIPAWGDTHVTDIKPLDLQRYIN 124

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
           + +       +    +R L   AVR + + ++P   +E PK + +  +     D+ +FK+
Sbjct: 125 TMQGKILHYRKITGYLRRLLNIAVRMDMIPVDPFTKIEMPKERRQVNKRKQFMDVDEFKA 184

Query: 185 FWS--------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKT-------- 226
           F             Q          +G+R  +      + +       SI          
Sbjct: 185 FLEVLDSQYKYINQQAYTLLRLGALTGMRTEELLALQWEQVDFNGGYISIVQALGRGFNG 244

Query: 227 -----------QKTGTIITVELPDGFMKLLAMTP-IGKETFFINNDKQKMNATQFSIWFK 274
                       K    I  ++         ++     + F  NN  + +   + + W  
Sbjct: 245 GTYIKAPKSQTSKRTLKIDNKMLAVLSDWYEVSHYNSNDDFVFNNQGKTLQVMRPNKWLH 304

Query: 275 AKATKAG--VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
             + K G  V  S H +R   AT++ D GA+  ++    G   V   
Sbjct: 305 DVSDKYGVAVGLSMHKLRHTWATLALDQGASVKQVQTYLGHADVSMT 351


>gi|319949186|ref|ZP_08023275.1| site-specific tyrosine recombinase XerD [Dietzia cinnamea P4]
 gi|319437172|gb|EFV92203.1| site-specific tyrosine recombinase XerD [Dietzia cinnamea P4]
          Length = 316

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 47/255 (18%), Positives = 78/255 (30%), Gaps = 34/255 (13%)

Query: 103 IRKSGDFDYRKITTKHIRSGVESRKHT----------PSSAIQFLTSMRVLFKWAVRQEY 152
           +   G  D   +T  H+                    PSS  + L ++R L ++A R   
Sbjct: 43  LAAVGVDDLTAVTEAHVEDFRARLATGDPDEGRPPLAPSSVARTLAAVRGLHRFATRDGV 102

Query: 153 VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW--------SEGSQPRLAFEFLLYSGL 204
              +   +V  P+      +    + M                   + R   E L  +G 
Sbjct: 103 TDTDVAAAVAPPRPPRRLPKALPLDRMIAVIEAAGDTGVDTDPARLRDRAMLELLYATGA 162

Query: 205 RCSDSCRAGVQHLQ-----NNIFSIKTQKTGTIITVELPDGFMKLL---------AMTPI 250
           R ++     V  L      +    I   K G    V +     + +         A+   
Sbjct: 163 RAAELIGLDVDDLDGLDHPDGGTVILRGKGGKERLVPVGRPACEAVGAYLTRARPALAKR 222

Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELM 308
           G    F+N    +++         A A +AGV +  S H  R   AT   D GA    + 
Sbjct: 223 GGPALFLNTRGGRISRQTLWNVVSAAAARAGVTQEVSPHSFRHSFATHLLDGGADIRVVQ 282

Query: 309 ATYGWKTVDQAETYT 323
              G  +V   + YT
Sbjct: 283 ELLGHASVTTTQVYT 297


>gi|49476240|ref|YP_034281.1| site-specific tyrosine recombinase XerC [Bartonella henselae str.
           Houston-1]
 gi|49239048|emb|CAF28348.1| Integrase /recombinase xerC [Bartonella henselae str. Houston-1]
          Length = 326

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 38/263 (14%), Positives = 71/263 (26%), Gaps = 27/263 (10%)

Query: 88  AVNSRISFESYFDQIIRKSGDFD-------YRKITTKHIRSGVESRKHTPSSAIQFLTSM 140
           A         +   + +  G           R I  +   +       +  S  + +  +
Sbjct: 44  AQAYERDTRQFLFFLCQHLGHTPTFKDLANLRVIDLRAYLAYRRKHDISARSLSRGMAGI 103

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT--------KEDMQQFKSFWSEGSQP 192
           R  F +  R+   +I     V  PK      +P          K++ QQ    W   ++ 
Sbjct: 104 RSFFNYLSREGIASIPAAKLVRTPKHPKSLPKPLNIKSALHLVKQENQQENEPWII-ARN 162

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTGTIITVELP----DGFMKLLA 246
                 L   G+R S++     +   +        T K G    V L     +     L 
Sbjct: 163 TAVLMLLYGCGMRISEALSLTPEQFSDPQKTSLFVTGKGGKTRLVPLIKVVYEAIQNYLK 222

Query: 247 MTP---IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAG 301
             P   +  +  F       +         +      G+    + H +R   AT     G
Sbjct: 223 CCPYPLLDNQPMFRGARGGPLQPAIIQKTVRNLRAYLGLPETATPHTLRHSFATHLLSRG 282

Query: 302 ATAHELMATYGWKTVDQAETYTK 324
                +    G   +   + YT 
Sbjct: 283 GDLRTIQELLGHACLSTTQVYTH 305


>gi|251773314|gb|EES53863.1| putative phage integrase [Leptospirillum ferrodiazotrophum]
          Length = 275

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 47/239 (19%), Positives = 86/239 (35%), Gaps = 13/239 (5%)

Query: 96  ESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--TPSSAIQFLTSMRVLFKWAVRQEYV 153
            S    I  +  D    ++T K +R   E +K   + S+A + L  ++ L + +V   ++
Sbjct: 27  RSMLFWINTRWKDRLLEEVTAKSVRKLAEEKKAETSASTANRTLALIKALLRASVEWGWL 86

Query: 154 AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG 213
              P   ++        +R  T+E+ ++      E  +P + F     +GLR S+     
Sbjct: 87  DRVP--PIKLYPLDNRRVRWLTREEARKLIGHLPEDLKPMVLFSLA--TGLRRSNVFALE 142

Query: 214 VQHLQNN----IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF-FINNDKQKMNATQ 268
              +           +  K+G  I V L +    +L       E F F + + +  N   
Sbjct: 143 WSQVDLARNVAWIHGEQSKSGKPIGVPLNETAGAVLKKQKGQSEVFVFPDKNGKARNRLA 202

Query: 269 FSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
              W +     AG+ N   H +R   A+    +G     L    GW +      Y   A
Sbjct: 203 DRAW-RKALRAAGIENFRWHDLRHTWASWHVQSGTPIPVLQELGGWHSYAMVLRYAHLA 260


>gi|15639386|ref|NP_218835.1| integrase/recombinase (xprB) [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189025628|ref|YP_001933400.1| integrase/recombinase [Treponema pallidum subsp. pallidum SS14]
 gi|3322673|gb|AAC65379.1| integrase/recombinase (xprB) [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189018203|gb|ACD70821.1| integrase/recombinase [Treponema pallidum subsp. pallidum SS14]
 gi|291059785|gb|ADD72520.1| tyrosine recombinase XerC [Treponema pallidum subsp. pallidum str.
           Chicago]
          Length = 297

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 41/264 (15%), Positives = 82/264 (31%), Gaps = 24/264 (9%)

Query: 85  GSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSG---VESRKHTPSSAIQFLTS 139
             L+ ++  ++    +   R  +       ++T   +R     +  R  + +S  + L+ 
Sbjct: 17  RRLSAHTVSAYARDLNLFERWLQHAQRACARVTVSDMRLFVCELGRRGLSAASINRVLSV 76

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS-----QPRL 194
           +R  + +A ++ + A NP   V   K  ++  R       + F +  S        +   
Sbjct: 77  VRGFYVFAKKKHWCADNPARLVRNIKGPSKLPRFMFPPQAKAFYTLPSRTDILWQERDAA 136

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLL-------- 245
            F  L  +G R S+     ++ +  ++ S I   K     TV +       L        
Sbjct: 137 LFAMLYSTGCRVSEIAALSLKDVHPHLSSAIVRGKGDRERTVFIAPFAQNFLHVYMQARA 196

Query: 246 ---AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADA 300
              A         F+N   + ++              A      S H  R   A+     
Sbjct: 197 QRCARYASCTPALFVNQRGRSLSVRGIQYLVSRYVLLAQDVHALSPHAFRHSFASTLIRR 256

Query: 301 GATAHELMATYGWKTVDQAETYTK 324
           GA         G  +V   + Y  
Sbjct: 257 GADVRVAQELLGHASVSTTQRYVH 280


>gi|292491077|ref|YP_003526516.1| integrase family protein [Nitrosococcus halophilus Nc4]
 gi|291579672|gb|ADE14129.1| integrase family protein [Nitrosococcus halophilus Nc4]
          Length = 320

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 44/242 (18%), Positives = 81/242 (33%), Gaps = 17/242 (7%)

Query: 45  PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR 104
             Y  A+     +   IN+  +   TL  ++  Y+K       A  ++         +  
Sbjct: 36  RDYHQAMV----RYAEINTQPRPMMTLGQVMDRYQKEVI-PKKAPRTQKDNLKQLVPLRA 90

Query: 105 KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP 164
             G      +T   I + ++ R   P SA +    +  +F +A+R      NPC  V+R 
Sbjct: 91  VFGHMPPNDLTPPEIYAYMDRRP--PVSANREKALLSHIFSYAIRWGAAKDNPCRHVKRN 148

Query: 165 KRKTEGIRPWTKEDMQQFKSFWSE-GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223
                G       D +Q++  +       + A +  L +GLR  D  +      +     
Sbjct: 149 TETPSGRYV----DPEQYRLVYDVMPEVVQCAMDIALLTGLRQGDVLKLKRTDCKEEGLL 204

Query: 224 IKTQKTGTIITVELPDGFMKLLAM---TPIGKETFFI--NNDKQKMNATQFSIWFKAKAT 278
           + T KTG  +     +   + +      P    T +I      Q      F   ++    
Sbjct: 205 VGTSKTGRTLMFSWTEDLREAINRAQNLPSTIATLWILHTKHGQPYTGDGFRTLWQKAMR 264

Query: 279 KA 280
           KA
Sbjct: 265 KA 266


>gi|120553910|ref|YP_958261.1| phage integrase family protein [Marinobacter aquaeolei VT8]
 gi|120323759|gb|ABM18074.1| phage integrase family protein [Marinobacter aquaeolei VT8]
          Length = 283

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 45/264 (17%), Positives = 87/264 (32%), Gaps = 19/264 (7%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----SRKHT 129
           L     ++      +  ++ S+      + R        ++    +++        R   
Sbjct: 4   LRQAMIQTMRQHGFSPQTQKSYLYVVADLARYY-RRSPDQLEVGDLQTYFNYLVQERSLA 62

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
           P+S   +L  +R L+   +      +N  L    PKR        T++D+ +        
Sbjct: 63  PASCRLYLHGIRFLYLQVLHWADFDVNLVL----PKRPQRIPELLTRQDVARIVGATKNP 118

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLLAM 247
              R         GLR S++    V+++        I   K G    V L D  + +L  
Sbjct: 119 KH-RALLLITYGCGLRVSEAVSLQVKNIDGERHLLHIHQGKGGKDRMVPLTDVLLDVLRA 177

Query: 248 -TPIGKETFFINND----KQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADA 300
              +G+   ++        Q + AT     ++     +GV +    H +R   AT   + 
Sbjct: 178 YWCLGRPVLWLFPSEVLVGQHLTATTAQKVYRHAKRLSGVQRRGGIHALRHAYATHQLEH 237

Query: 301 GATAHELMATYGWKTVDQAETYTK 324
           G   +EL    G   +   E Y  
Sbjct: 238 GVPLNELQKYLGHSDLRTTERYLH 261


>gi|307691931|ref|ZP_07634168.1| Phage integrase [Ruminococcaceae bacterium D16]
          Length = 390

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 56/293 (19%), Positives = 94/293 (32%), Gaps = 38/293 (12%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRK- 127
           TL   +  + +     +L  N+  S+E Y    +    G     ++T   I+      K 
Sbjct: 60  TLGEWLDRWMEEYGAVTLRPNTLRSYEQYIRCYVKPYLGGKIVSRVTRLDIQKLYRKLKK 119

Query: 128 -----HTPS-----SAIQFLTSMRVLFKWAVRQE---YVAINPCLSVERPKRKTEGIRPW 174
                  P      S    L    +L +     E    V  NP   V+ PK   +  +  
Sbjct: 120 EGRVHDHPEYGHELSDSMVLRIHAMLHRCLKDAERDHIVPYNPTDGVKLPKSNYKPKQVL 179

Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK------TQK 228
            +E M  F +   +    R  F   L +GLR  + C    +    N  ++K        K
Sbjct: 180 DREQMDAFLAAVDKNEIWRDFFYTELTTGLRRGEICGLMWRDFDENAGTLKILRSVNVPK 239

Query: 229 TGT-----------IITVELPDGFMKLLAMTPIGKETFFIN----NDKQKMNATQFSIWF 273
            G              T+ LP   ++ L        + +I       ++ +  +    W 
Sbjct: 240 RGELEIGETKTERGRRTIRLPPSTVQRLKERKKHAISQWIFPEPLAPEKPVRPSAAYYWM 299

Query: 274 KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTK 324
           K    +AG+     H +R   AT +  +G  A  L    G        +TYT 
Sbjct: 300 KVLLKEAGLPHIRFHDLRHTFATHALASGVDAKTLSGILGHTNASFTLDTYTH 352


>gi|228966946|ref|ZP_04127984.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228792680|gb|EEM40244.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus thuringiensis serovar sotto str. T04001]
          Length = 376

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 43/293 (14%), Positives = 96/293 (32%), Gaps = 28/293 (9%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHT 129
              L+  + +     S   ++   ++     +++ + G+     I    + +  +     
Sbjct: 63  FSQLVEIWMQEKE-SSCRPSTLYQYKRILRSRVMPEFGEKRLSDIKPLTVHNFHQKLLKE 121

Query: 130 PSSAIQFLTS---MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             +     +    ++ +    V  E +  NP    +RPK K +    WT E+  +F  + 
Sbjct: 122 GLTTKYISSVDVMLKQILDKGVELEMINSNPAKKAKRPKVKKKAQASWTVEEAMKFMEYA 181

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT------------ 234
                  +AF   L++G+R  +        +     +I  Q+T T++             
Sbjct: 182 KIQGSYYIAFVLALHTGMRIGEVLALQWDDINFENKTIHVQRTLTLVDGKYELGETKTEA 241

Query: 235 ----VELPDGFMKLLAMTPIGK-----ETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284
               + + +  M  L      +     +      +K+ ++        KA      V   
Sbjct: 242 SNRMIPMTEDLMGALLEYQNHRKENSFDLLICTRNKKIVHPYTIRYQMKALCEAIDVPYI 301

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNS 336
             H +R+   TI  D+GA A  +    G   V      YT   +  ++ +   
Sbjct: 302 RFHDIRRTFTTILIDSGANAKVVSKLLGHTNVSTTLNIYTDVYEERQIEVTEM 354


>gi|297561148|ref|YP_003680122.1| integrase family protein [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296845596|gb|ADH67616.1| integrase family protein [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 329

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 47/317 (14%), Positives = 106/317 (33%), Gaps = 39/317 (12%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS--------GDFDYRKITTK 117
            +   +   + +Y  +      + ++  ++      ++              +++ +   
Sbjct: 3   AQTGPVAEAVEQYLVARRAAKPSPHTVAAYRRDLRGVLGCVAQVMGVEPEQVEWQDLEAG 62

Query: 118 HIRSGVESRK--HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
            +R+           SS ++  ++    F + V +  VA NP  +V RP+ +  G +P  
Sbjct: 63  VLRAAFAEFAGERAASSVVRAWSTWNGFFGFWVSEGVVAGNPMSAVPRPRVRPSGPKPLM 122

Query: 176 KED-----MQQF-----KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225
            ED     ++       K+      +        L +G+R ++     V+ +       +
Sbjct: 123 GEDTPERLLEALARGARKARDPWPERDLAVLALALLTGMRSAEMLSLRVESVGGRSGERR 182

Query: 226 ---TQKTGTIITVELPDGFMKLLAM----------TPIGKETFFINNDKQKMNATQFSIW 272
                K G    + +      LL               G +   ++N  + +        
Sbjct: 183 IRVVGKGGGERVLPIEVPLEALLEAYLVSRRERFGVVRGSDPLLVDNRGEGLRRGGLQYL 242

Query: 273 FKAKATKAGVNKSA------HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            +     AGV+         H +R   AT  A+ GA+  E+M   G  +V  ++ Y +  
Sbjct: 243 VQQCYKHAGVHDRVARGTLVHALRHTFATRLAEDGASVSEIMHLLGHASVASSQAYIEVT 302

Query: 327 DRIRLGIKNSRRISSVV 343
            R +    +S R   V+
Sbjct: 303 ARAQREAASSNRTYGVL 319


>gi|115377467|ref|ZP_01464669.1| phage integrase family protein [Stigmatella aurantiaca DW4/3-1]
 gi|310823313|ref|YP_003955671.1| phage integrase family protein [Stigmatella aurantiaca DW4/3-1]
 gi|115365511|gb|EAU64544.1| phage integrase family protein [Stigmatella aurantiaca DW4/3-1]
 gi|309396385|gb|ADO73844.1| Phage integrase family protein [Stigmatella aurantiaca DW4/3-1]
          Length = 381

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 54/345 (15%), Positives = 110/345 (31%), Gaps = 30/345 (8%)

Query: 4   SLRLPPFVTKERTRHGKII-YYFRKGHGR--RIRLPYP-----HESTFIPAYMSALTGST 55
           S+++ P++  +R + G  +   F+   G   R R+  P         +     S L    
Sbjct: 2   SVKVRPYI--KRGKSGWEVDIMFKWPDGELYRERVKAPVSSKSGAKAWGEQRQSELLARG 59

Query: 56  PKREYINSPRKKPTTLKWLISEY-RKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRK 113
            + +     +  P  L+  +  +    A       ++ IS ES     ++ + G      
Sbjct: 60  KQAKEEVKRKAVPM-LEEFVPRFIEGYARANRQKPSTIISKESVLRIYLVPRFGQRRLDT 118

Query: 114 ITTKHIRSGVESRKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
           +T + I+      K  +  +    LT    L K AV    +   P   ++  K     + 
Sbjct: 119 LTHEDIQRLKADLKDLSTKTVNNVLTVFNKLLKVAVEWGVLDKLPVT-IKLLKAPKPTMS 177

Query: 173 PWTKEDMQQF-KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ-- 227
            +  E+ ++  ++      + +        +GLR  +        +        I+    
Sbjct: 178 FYDFEEYERLVEAASKLDWRIQAMVLLGGDAGLRSGEILALEWTDVDFRRGQLHIRQSEW 237

Query: 228 -------KTGTIITVELPDGFMKLLAM-TPIGKETFFINNDKQKMNATQFSIWFKAKATK 279
                  K G    V +      LLA    +        ++ Q       S W      +
Sbjct: 238 QGHVTVPKGGRDRRVPMTKRLAALLATNRHLKGPRVLYRDNGQPATRAAVSRWMAKAQKR 297

Query: 280 AGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           AG+  +   H +R    +  A  GA A  +    G + +   + Y
Sbjct: 298 AGLPVTRALHVLRHTFCSPLAMRGAPAKAIQELAGHENLSTTQRY 342


>gi|330880190|gb|EGH14339.1| Phage integrase [Pseudomonas syringae pv. morsprunorum str.
           M302280PT]
          Length = 271

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 49/247 (19%), Positives = 91/247 (36%), Gaps = 28/247 (11%)

Query: 110 DYRKITTKHI---RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPK 165
           ++R +T  H+   R+ +E R    ++  + L ++  LF   +        NP   V+RP+
Sbjct: 14  EFRVVTRSHVLAWRAHLEHRGLAGATIRRKLAALASLFDHLLENNAIAGGNPVHGVKRPR 73

Query: 166 RKT-EGIRPWTKED-----MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-- 217
            ++ EG  P   +      ++       +G + R     LLY GLR  ++    V  +  
Sbjct: 74  IESNEGKTPALGDHQAKALLEAPDETTLKGQRDRALLAVLLYHGLRREEAALLQVSDIQE 133

Query: 218 QNNIFSIKT-QKTGTIITVELPDG--------FMKLLAMTPIGKETFFINNDKQ----KM 264
           +  I  +K   K G +  + L                      K   F+    +     +
Sbjct: 134 RRGIQHLKVHGKGGKVRYLPLHPIAAGRIHQYLENSEHHLAERKVPLFMPLRGKLTGAGI 193

Query: 265 NATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
            A        A A KAG+       HG+R  +AT + +  A   ++ A  G   +   + 
Sbjct: 194 TANGIYAVVTAYAKKAGIEVDGLGVHGLRATAATNALEHEADIAKVQAWLGHANISTTKI 253

Query: 322 YTKGADR 328
           Y +  +R
Sbjct: 254 YDRRENR 260


>gi|147677726|ref|YP_001211941.1| site-specific recombinase XerD [Pelotomaculum thermopropionicum SI]
 gi|146273823|dbj|BAF59572.1| site-specific recombinase XerD [Pelotomaculum thermopropionicum SI]
          Length = 317

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 39/282 (13%), Positives = 96/282 (34%), Gaps = 20/282 (7%)

Query: 65  RKKPTTLKW--LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIR 120
           R K  ++KW   + E+         A  +   +++      +   +   DY  +      
Sbjct: 6   RLKKLSVKWEQALEEFLLHKKAEGRAARTLFDYKARITPFFQAYPEAWPDYEALRRAVRL 65

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
              +     P+S    L  +R  F W + +  +  NP   + + K + +      ++ ++
Sbjct: 66  YLAQFTGKAPASYNLPLQYLRSFFSWCMAENMLHANPTEGIAKRKDEGKAREI-PEDTLK 124

Query: 181 QFKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI---------KTQ 227
              +        G +        + +G+R  ++              +         +TQ
Sbjct: 125 NLLALPDRRTYAGIRDYALILLQVDTGIRPGEALNLKPSDFNIPQLEVVIPRETAKTRTQ 184

Query: 228 KTG--TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS 285
           +T   + +T +     + +           F + D ++M  T ++   +A   + G +  
Sbjct: 185 RTAVYSPVTAKAIKRLLDVRPPDWNDSVPVFASQDGKRMLETSWANRLRAYGKRIGADLQ 244

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
            + +R  SA ++   GATA  +    G   +   + Y +  +
Sbjct: 245 PYMLRHTSAIMALRNGATAFFVQKQLGHSDMQMTKRYCRLVE 286


>gi|323487277|ref|ZP_08092579.1| hypothetical protein HMPREF9474_04330 [Clostridium symbiosum
           WAL-14163]
 gi|323399418|gb|EGA91814.1| hypothetical protein HMPREF9474_04330 [Clostridium symbiosum
           WAL-14163]
          Length = 410

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 52/321 (16%), Positives = 105/321 (32%), Gaps = 53/321 (16%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKHT--PSS 132
            ++  S      A ++   +  Y+   I    GD    KI+  HI+  V++ K      +
Sbjct: 89  KQWLSSCKPPVFANSTYEGYSYYYTHYIADVFGDRPVNKISPLHIQKYVDAMKEKYSAET 148

Query: 133 AIQFLTSMRVLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
             + +  +  +F +A+   + +A+NP   ++R K     +  W+ +D+Q F +     S 
Sbjct: 149 VNKCINVLIDIFNYAITPLKEIAVNPASGIKRLKVSRPQMTVWSDDDVQYFLNLPEVKSS 208

Query: 192 P-RLAFEFLLYSGLRCSDSCRA-------GVQHLQ-----NNIFSIKTQKT-GTIITVEL 237
                F   L  G R S+ C           + L      +   ++   KT G+   + +
Sbjct: 209 EYYAMFCVSLLIGSRPSEVCGLSELSLLDNPKRLDFWRGYDQHGAVSDMKTDGSHRVIRI 268

Query: 238 PDGF-------------MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK----- 279
           PD                +L        E  F+      +    +S  FK    +     
Sbjct: 269 PDILYKSIHRRLLWKKEQQLKNPEFGNNEFLFVTKFGNPIRPNLYSKAFKRIVMQHNEQI 328

Query: 280 AGVNK-----------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           + ++K           + +G R   AT +         + +  G         Y      
Sbjct: 329 SKLDKIPEGRRLLPVITLYGCRHSFATNALAGNNDPALISSIMGNSVKTLLTRYAHPNQE 388

Query: 329 IRL------GIKNSRRISSVV 343
            +L        K  +++S  +
Sbjct: 389 RQLSLINDFADKALKKVSQNI 409


>gi|296328607|ref|ZP_06871124.1| integrase/recombinase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 23726]
 gi|296154206|gb|EFG95007.1| integrase/recombinase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 23726]
          Length = 338

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 42/295 (14%), Positives = 96/295 (32%), Gaps = 44/295 (14%)

Query: 88  AVNSRISFESYFDQIIR--KSGDFDY---------RKITTKHIRSGV----ESRKHTPSS 132
           +  +   +  +    +     G+ D+         + I  + + + +    E RK   +S
Sbjct: 43  SEKTVKDYMFHLKDFLHFVYDGENDFSISEVIPLMQDIEKEDVEAYIVHLFEDRKLKKTS 102

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW--TKEDMQQFKSFWSEGS 190
               L++++ L+K          NP   ++  K           + +D+++    +   S
Sbjct: 103 VNTILSALKSLYKELESNGL--KNPVKYIKLFKVNRNIENVLKVSIDDIRKIIGLYKIDS 160

Query: 191 QPR----LAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDGFM 242
           + +         L Y+G+R  +      +H         F +   K+G  +   +    +
Sbjct: 161 EKKYRNITILYTLFYTGMRSKELLTLQFKHYLKREDEYFFKLIQTKSGKDVYKPIHKSLV 220

Query: 243 K-------------LLAMTPIGKETFFINN--DKQKMNATQFSIWFKAKATKAGVNKSAH 287
           K              L +  + ++  F  +  D   ++    +   +      G + S H
Sbjct: 221 KKLEEYKKYLISMYSLDLKDLDEKYIFSTSVLDNTPLSYRSLNAIIQDMGKLIGKDISPH 280

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
            +R   AT  + +GA   E+    G       E Y     R  L  K   ++  +
Sbjct: 281 NIRHAIATELSLSGADILEIRDFLGHSDTKVTEVYINA--RSILEKKVLEKLPEI 333


>gi|294785567|ref|ZP_06750855.1| integrase/recombinase [Fusobacterium sp. 3_1_27]
 gi|294487281|gb|EFG34643.1| integrase/recombinase [Fusobacterium sp. 3_1_27]
          Length = 328

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 42/295 (14%), Positives = 96/295 (32%), Gaps = 44/295 (14%)

Query: 88  AVNSRISFESYFDQIIR--KSGDFDY---------RKITTKHIRSGV----ESRKHTPSS 132
           +  +   +  +    +     G+ D+         + I  + + + +    E RK   +S
Sbjct: 33  SEKTVKDYMFHLKDFLHFVYDGENDFSISEVIPLMQDIEKEDVEAYIVHLFEDRKLKKTS 92

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW--TKEDMQQFKSFWSEGS 190
               L++++ L+K          NP   ++  K           + +D+++    +   S
Sbjct: 93  VNTILSALKSLYKELESNGL--KNPVKYIKLFKVNRNIENVLKVSIDDIRKIIGLYKIDS 150

Query: 191 QPR----LAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDGFM 242
           + +         L Y+G+R  +      +H         F +   K+G  +   +    +
Sbjct: 151 EKKYRNITILYTLFYTGMRSKELLTLQFKHYLKREDEYFFKLIQTKSGKDVYKPIHKSLV 210

Query: 243 K-------------LLAMTPIGKETFFINN--DKQKMNATQFSIWFKAKATKAGVNKSAH 287
           K              L +  + ++  F  +  D   ++    +   +      G + S H
Sbjct: 211 KKLEEYKKYLISMYSLDLKDLDEKYIFSTSVLDNTPLSYRSLNAIIQDMGKLIGKDISPH 270

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
            +R   AT  + +GA   E+    G       E Y     R  L  K   ++  +
Sbjct: 271 NIRHAIATELSLSGADILEIRDFLGHSDTKVTEVYINA--RSILEKKVLEKLPEI 323


>gi|58697179|ref|ZP_00372594.1| site-specific recombinase, phage integrase family [Wolbachia
           endosymbiont of Drosophila simulans]
 gi|58536507|gb|EAL59887.1| site-specific recombinase, phage integrase family [Wolbachia
           endosymbiont of Drosophila simulans]
          Length = 278

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 33/233 (14%), Positives = 73/233 (31%), Gaps = 19/233 (8%)

Query: 109 FDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL-SVERPKRK 167
            +      +   +   +R     S  + L+ +R  FK+ ++  +   N  + S+ RP ++
Sbjct: 25  KNLSIPELRSWLTSRYARGVNARSNTRALSVIRNFFKY-IKNNHNIDNEAVFSLSRPIQR 83

Query: 168 TEGIRPWTKEDMQQFKSFWSEGS--------QPRLAFEFLLYSGLRCSDSCRAGVQHLQN 219
               +  +  +++                  +       L  +GLR S++    V  + N
Sbjct: 84  RTLPKALSIPNIKTLLKEMKLSDLGEPWVVKREIAIIVLLYGTGLRISEALNLRVSDINN 143

Query: 220 NIFSIKTQKTGTIITVELPDGF----MKLLAMTP--IGKETFFINNDKQKMNATQFSIWF 273
               I T K      V +         + +   P     +  F+    +K+  T  +   
Sbjct: 144 ESL-IVTGKGDKQRQVFILPVVKKCIQEYIKACPYLDEAQHLFVGVRGKKLGRTYVANRL 202

Query: 274 KAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +       +    S H  R   AT           +    G  +++  + YT 
Sbjct: 203 QKIRRMLNLPEILSPHAFRHSFATHLLQEDIDIRSIQQLLGHSSLETTQIYTH 255


>gi|163869346|ref|YP_001610602.1| integrase/recombinase XerD [Bartonella tribocorum CIP 105476]
 gi|161019049|emb|CAK02607.1| integrase/recombinase XerD [Bartonella tribocorum CIP 105476]
          Length = 312

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 42/284 (14%), Positives = 100/284 (35%), Gaps = 33/284 (11%)

Query: 74  LISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESRK 127
           +I  + +  +     + ++  +++        +         + +      + S + +  
Sbjct: 6   VIERFLEMMSAERGASAHTLAAYQHDLQWAQDELSSHSVSLFSAQKEDLIGLLSLMHTFG 65

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              +S  + L+++R  +++   +   A +P   ++ P++     +  +++ + +F     
Sbjct: 66  FAATSQARRLSTLRQFYQFLYAEGLRADDPSHDIDAPRQGRPLPKIISEDVVIKFLDLAQ 125

Query: 188 E-------GSQPRLAF-------EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233
                   GS+  L         E L  +GLR S+     VQ ++   +S+  +  G   
Sbjct: 126 LEVNQADYGSKDYLRALRLQLLSEMLYATGLRISELVSLPVQAVRGKEYSLLVRGKGKKE 185

Query: 234 TVELPDG-----FMKLLAMTPIGKET----FFINNDKQKMNATQFSIW-FKAKATKAGVN 283
            + L         ++ L +   GK+      F  + +    A Q      K  A +AG+ 
Sbjct: 186 RMVLLSKKAYQVLLQWLDLRDQGKDAKSLYLFPAHSETGYIARQVVARELKNLAKRAGIT 245

Query: 284 K---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
               S H +R   A+     GA    +    G   +   + YT 
Sbjct: 246 SESFSPHVLRHAFASHLLQNGADLRAVQHLLGHSDISTTQIYTH 289


>gi|323128281|gb|ADX25578.1| DNA integration/recombination/inversion protein [Streptococcus
           dysgalactiae subsp. equisimilis ATCC 12394]
          Length = 374

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 61/321 (19%), Positives = 106/321 (33%), Gaps = 52/321 (16%)

Query: 50  ALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGD 108
           A+ G T K +   +  K+ T L W    Y+ +     +  NSR S E      I+   GD
Sbjct: 42  AMNGYTVKEKPTVTTYKELTALWW--ESYKNT-----IKPNSRQSMEGIVRLHILPAFGD 94

Query: 109 FDYRKITTKHIRSGVESRKHTPSS------AIQ-FLTSM-RVLFKWAVRQEYVAINPCLS 160
               ++TT  I+  V    +  +       A   FL ++ R + ++ V  + +  NP   
Sbjct: 95  CKLSRLTTPVIQQQVNKWANNANKGIKGAYANYSFLNNINRRILQYGVTMQVIEHNPARD 154

Query: 161 VERPKRKTEGIRP---WTKEDMQQFKSFWS-------EGSQPRLAFEFLLYSGLRCSDSC 210
           V  P+++         ++ ++++QF ++         E     + ++ LL +G R  +  
Sbjct: 155 VIIPRKQNNKEHKVKFFSNQELKQFLNYLDDLDLSSYENFFDYVLYKTLLATGCRIGEVL 214

Query: 211 RAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ-------- 262
                 +     +IK  KT               L    I + T  +    +        
Sbjct: 215 ALEWSDIDLEKGTIKVSKTLNRYQETNTPKSKAGLRDIEIDRATVLLLKQYKNRQQVLSW 274

Query: 263 -----------KMNATQ-----FSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAH 305
                                      +     AGV + S HG R   ATI   AG  A 
Sbjct: 275 DLGRSETIVFTPFTTKYAYACLLRKRLQKHFKAAGVPDISFHGFRHTHATIMLYAGIEAK 334

Query: 306 ELMATYGWKTVDQA-ETYTKG 325
           +L    G   +     TY   
Sbjct: 335 DLQYRLGHSNISMTLNTYVHA 355


>gi|251780460|ref|ZP_04823380.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
 gi|243084775|gb|EES50665.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
          Length = 385

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 57/353 (16%), Positives = 115/353 (32%), Gaps = 53/353 (15%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG-S 86
           G  RR+            A+  A      K     SP       K  I ++         
Sbjct: 24  GKRRRVIKQGFRTKKLAEAF--ATQILDKKNHGFVSPTDSDLLFKNFIMKWYDMHTTSLK 81

Query: 87  LAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSG----VESRKHTPSSAIQFLTSMR 141
           L+VN+R  + S  +  +I   G++  + I+   +++     +  +   P++  ++L  + 
Sbjct: 82  LSVNTRNDYLSRINTNLIPLLGNYKIKDISIDVVQNFYNTLINEKHLKPTTVKKYLDILS 141

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201
              K+A  ++ +   P   +++ K +   I  W +E++  F ++    +         + 
Sbjct: 142 SCLKYAQSKDLIYKLPTSYIKKVKIQKPKIEYWNQEEVNFFLNYIK-NTYLYTPIFIDIL 200

Query: 202 SGLRCSDSCRAGVQHLQ--NNIFSIKTQ---------------KTGTIIT-VELPDGFMK 243
           +GLR  + C      +   N I ++  Q               KT +    + +P   + 
Sbjct: 201 TGLRIGELCGLRWCDVDLQNGIITVNHQLIHDKRLKVLLLADLKTSSSHRSITIPKILID 260

Query: 244 LLA-----MTPIGKETFFINNDKQKMNATQFSIWF--KAKATKAGVN------------- 283
            L            E   ++    K      S+ F  K    K  ++             
Sbjct: 261 YLKELKANRQATNTEYVVLDRQDFKYIPRSLSMNFTKKVAKYKKSIDDFKKANEEVPHGY 320

Query: 284 -----KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIR 330
                 S HG+R   AT+    G     +    G   +     TYT   D ++
Sbjct: 321 MQLKQISFHGLRHTHATLLIANGENVKVVSERLGHTDIRMTLNTYTHVLDSMK 373


>gi|288574964|ref|ZP_06393321.1| integrase family protein [Dethiosulfovibrio peptidovorans DSM
           11002]
 gi|288570705|gb|EFC92262.1| integrase family protein [Dethiosulfovibrio peptidovorans DSM
           11002]
          Length = 297

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 46/289 (15%), Positives = 97/289 (33%), Gaps = 30/289 (10%)

Query: 69  TTLKWLISEY--RKSAHWGSLAVNSRISFESYF---DQIIRKSGDFDYRKITT--KHIRS 121
           T+   ++ ++    S   G  + N+  ++       +    +SG       +        
Sbjct: 2   TSFSSILGQFLSYLSLELGE-SQNTCKAYRVDISQWNDFCSRSGRDPVASDSDLYGKYVH 60

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAIN-PCLSVERPKRKTEGIRPWTKEDMQ 180
            + S    P++  +   ++R    + V + YV+ + P      P R     +  T+ ++ 
Sbjct: 61  YMRSIDLAPATIQRKCAAVRTWINFLVVEGYVSDDVPM--PPLPDRPKRLPQLLTEGEVS 118

Query: 181 QFKSFWS------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTII 233
           +               + R   E L   GLR S+ C   ++ LQ    S I   K     
Sbjct: 119 RLLGACDGDPMGYLDFRDRAILETLYGCGLRASELCSLKLRDLQFERASMIIFGKGNKER 178

Query: 234 TVELPDGFMKLLAM---------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284
            V L     + +              G +  F++ + + M         + + ++AG+++
Sbjct: 179 MVPLVGSARRWIERFIDEARPSVAKEGVDQVFLSRNGRPMRRESLWKMIRKRGSRAGISQ 238

Query: 285 S---AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
           S    H +R   A+     G     L    G +++   E Y      +R
Sbjct: 239 SRLHPHVIRHTVASHLLRRGMDLRTLQEFLGHESIGTTEKYLHFDQELR 287


>gi|254450128|ref|ZP_05063565.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198264534|gb|EDY88804.1| phage integrase [Octadecabacter antarcticus 238]
          Length = 315

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 43/266 (16%), Positives = 82/266 (30%), Gaps = 17/266 (6%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132
            L     +     ++   ++              G       T   +R+       T  +
Sbjct: 28  ALRQRMIEDMRIRAIGETTQKGHIRAIKHFATFLGRSPDTA-TPDELRAYQLHMTDTEVT 86

Query: 133 A---IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM-QQFKSFWSE 188
                  + S+R+ F     +E +       ++  ++        + E++     +    
Sbjct: 87  TSTFNTRIVSLRLFFGVTCGREEMKR----YMQFRRKPRRLPVVLSVEEIGDLLAAVPGP 142

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLLA 246
           G   R A      +GLR S+ C   V  + +      +   K G      L  G + LL 
Sbjct: 143 GLTYRAALGISYGAGLRASEVCHLKVVDIDSGRMLIHVDEGKNGKDRKAMLSPGLLDLLR 202

Query: 247 ---MTPIGKETFFINNDK-QKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
              +    +   F    K   ++  Q +  F +    AG+NK  + H +R   AT   +A
Sbjct: 203 EYWLEARPEGWLFPGKPKINPLSPRQLNRAFTSAKHMAGINKPATLHTLRHSFATHLLEA 262

Query: 301 GATAHELMATYGWKTVDQAETYTKGA 326
           G     +    G   +     YT  A
Sbjct: 263 GTDVRVIQVLLGHSKLSTTARYTHVA 288


>gi|162447445|ref|YP_001620577.1| tyrosine recombinase/integrase [Acholeplasma laidlawii PG-8A]
 gi|161985552|gb|ABX81201.1| tyrosine recombinase/integrase, xerDC family [Acholeplasma
           laidlawii PG-8A]
          Length = 310

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 48/282 (17%), Positives = 93/282 (32%), Gaps = 32/282 (11%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSGVESRK 127
            + L  +Y   A    +++ ++ S+E    Q +       D   R       R  +  RK
Sbjct: 7   FRQLTKKYLDDA---DVSLTTKQSYERILQQFVEYANTLSDLPTRS-DIMAYRDHLFKRK 62

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP-WTKEDMQQFKSFW 186
              ++    L  +R  ++W     +   NP   ++ PK + +  R   ++ + +Q     
Sbjct: 63  LEETTIKYHLVVVRNFYRWYHTNGH-GANPSEGIKSPKIEKKFKRAHLSESESRQLLKLA 121

Query: 187 SEGS-------QPRLAFEFLLYSGLRCSDSCRAGVQH---LQNNIFSIK--TQKTGTIIT 234
              S       +  +    +L +G+R  +  RA V     + +          KT     
Sbjct: 122 QINSDKNIIKYRDYVMVLLMLTTGMRTVEVERADVSDLNVIDDGEILYVHGKGKTSKSSF 181

Query: 235 VELPDGFMKLLAMTPIGK----ETFFINND----KQKMNATQFSIWFKAKATKAGVN--- 283
           V L     K +    + +    E  FI++      Q+M         K      G +   
Sbjct: 182 VRLSPLVNKAIETYIMKRSDQYEPLFIDHKPKYLGQRMKTRNIRRIIKDLLRDIGFDDDK 241

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
            +AH +R  +AT++   GA   +             E Y   
Sbjct: 242 HTAHSLRHTTATLARQYGANKDDTQKIMRHSDPATTEIYMHA 283


>gi|282879915|ref|ZP_06288640.1| phage integrase domain protein [Prevotella timonensis CRIS 5C-B1]
 gi|281306217|gb|EFA98252.1| phage integrase domain protein [Prevotella timonensis CRIS 5C-B1]
          Length = 292

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 42/267 (15%), Positives = 95/267 (35%), Gaps = 24/267 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVESRKH 128
           +I E+     +  + +  +  ++                   +  I +  IR  +ES   
Sbjct: 1   MIKEFLDYLRFEKNRSALTVKNYGKDLMAFEEFFRLLEPQLSWESIDSNIIRDWMESMMD 60

Query: 129 TPSSA---IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
             ++A    + L+++R  +++A+ +  V  +P +++  PK+K    +   + +M    +F
Sbjct: 61  RGNNATSINRRLSALRSFYRFALTRGLVDKDPTITIVGPKKKKPLPQFVKESEMDALLAF 120

Query: 186 WSEGSQ-----PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPD 239
             E +Q          E    +G+R ++        +     S+K   K      +    
Sbjct: 121 KLEVNQYKDVLAHTLVETFYCTGMRLAELIGLDEASIDFAHQSLKVLGKRNKERYIPFGA 180

Query: 240 GFMKLL--------AMTPIGKETFFINNDKQKMNATQFSIWF-KAKATKAGVNK-SAHGV 289
              + L                 FF++ D Q++   Q      K  +T   + K + H +
Sbjct: 181 ELKESLQYYISIRDQQVQRQSTAFFVDKDGQRLTHNQVRYAVNKCLSTVTTLKKRTPHVL 240

Query: 290 RKFSATISADAGATAHELMATYGWKTV 316
           R   AT   + GA    +    G +++
Sbjct: 241 RHTFATAMMNHGAGLESVQQLLGHQSL 267


>gi|170697596|ref|ZP_02888685.1| integrase family protein [Burkholderia ambifaria IOP40-10]
 gi|170137483|gb|EDT05722.1| integrase family protein [Burkholderia ambifaria IOP40-10]
          Length = 327

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 48/323 (14%), Positives = 105/323 (32%), Gaps = 28/323 (8%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           R R GK     R+           +  T    +  ++     +  +++    +  TL+ +
Sbjct: 5   RQRDGKWQVRVRRRGFAD-EAKTFNTRTDAERWARSVETEMDRGSFVSRSEAEANTLEDI 63

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGVESR--KHT 129
           I+ Y        +    R   ++         +         +T K + +  + R  +  
Sbjct: 64  INLYI-----TDVCPTQRSGPDAIIRLRATCRKTLAKLSMAALTPKAVAAYRDERLKQVK 118

Query: 130 PSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           P++ I+ L  +  +   A R+ +    NP   + +P       R  + E+  +  +    
Sbjct: 119 PATVIRELAFLSAIINHARREWDINIPNPIALIRKPTAPQGRDRVLSIEEEARLLAELVP 178

Query: 189 GSQPRLAFE----FLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFM 242
             +  +         L +G+R  +        +        +   K GT  TV L    +
Sbjct: 179 VGRINVWLLPATILSLETGMRRGELVALRWSDVNLEAQTAHLSMTKNGTARTVPLSKKAV 238

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFS--IWFKAKATKAGV-NKSAHGVRKFSATISAD 299
             LA  P        + D + +     +     +    +AG+ +   H +R  + T  A 
Sbjct: 239 ATLAALPR-------SIDGRVIPVKGLTLHAALRKACARAGIVDFHWHDLRHTAITRMAQ 291

Query: 300 AGATAHELMATYGWKTVDQAETY 322
                 EL A  G +++   + Y
Sbjct: 292 KLPNVIELAAVSGHRSLAMLKRY 314


>gi|320107543|ref|YP_004183133.1| integrase family protein [Terriglobus saanensis SP1PR4]
 gi|319926064|gb|ADV83139.1| integrase family protein [Terriglobus saanensis SP1PR4]
          Length = 419

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 54/348 (15%), Positives = 98/348 (28%), Gaps = 32/348 (9%)

Query: 22  IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKS 81
            +Y      R  +         +P+   A       R  IN   + P T+  LI+ YRK 
Sbjct: 24  RWYDETSGKRTYKKRNLGTVKDLPSRRDAEQAVADFRANINVEVRVPITVSELIAHYRKH 83

Query: 82  AHWGSLAV-NSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
                     +  S   Y  + I  K G+     + T  +   + S  + P++  +    
Sbjct: 84  ELTEDKKAFATIASTSIYLTNHIAPKWGEKWLSDVRTVEVEEWLHSLPYAPATKSKIRNI 143

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199
           M  +F  A+R E+   NP   V    ++       T  +            + +      
Sbjct: 144 MSAVFNHAIRYEWTHRNPITKVRASSKRLREPDVLTPGEFSALVEELPL--RVKAMVILA 201

Query: 200 LYSGLRCSDSCRAGVQHLQ--------------NNIFSIKTQKTGTIIT-----VELPDG 240
             +GLR S+      + +                     KT+ +   +      +E  D 
Sbjct: 202 GSTGLRRSELVALTWRDVDPLLMQINVLRSCVRGRFGDTKTEASRKPVPLHTSVIECLDV 261

Query: 241 FMKLLAMTPIGKETF--FINNDKQKMNATQ-FSIWFKAKATKAGVNKS---AHGVRKFSA 294
           + K           F    N  +  +          +    +A +       H  R   A
Sbjct: 262 WRKESRYNGEDDFLFPSVRNEGRTPVTPDMILKKIIRPALVRAKITGKRIGWHSFRHSLA 321

Query: 295 TISADAGATAHELMATYGWKTVDQA-ETYTKG--ADRIRLGIKNSRRI 339
           T    AGA                  + YT+   A++     K    +
Sbjct: 322 TNLRAAGADLKTAQELLRHANSRITLDIYTRAISANKREANNKVMEMV 369


>gi|269126616|ref|YP_003299986.1| integrase family protein [Thermomonospora curvata DSM 43183]
 gi|268311574|gb|ACY97948.1| integrase family protein [Thermomonospora curvata DSM 43183]
          Length = 338

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 51/326 (15%), Positives = 94/326 (28%), Gaps = 47/326 (14%)

Query: 70  TLKWLISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGD----------FDYRKITTK 117
           TL+ L   +          ++ N+  ++ +  +   R   D               + T 
Sbjct: 5   TLQDLAERWLDHKRASGRGMSDNTEAAYRADLNAWGRALADHHAIDTPDQTRPLEALHTG 64

Query: 118 HIRSG--------VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
           H+ +               T ++  + ++++R    W VR  ++  +P   +E P+    
Sbjct: 65  HLTAEALTAAAASFYREGKTAATRSRRISALRGWCAWLVRTGHLTADPTTDLETPRLPRR 124

Query: 170 GIRPWTKEDMQQFKSFWS---EGSQP------RLAFEFLLYSGLRCSDSCRAGVQHL--- 217
                T   +       S   +G++       R        +G R  +     V  +   
Sbjct: 125 LPVALTDAQLAAIVQAASTPWQGARAQWVRLDRALLALFAGAGARTGEVVALRVGDVICE 184

Query: 218 -QNNIFSIKTQKTGTIITVELP-----------DGFMKLLAMTPIGKETFFINNDK---Q 262
                      K G    V L            D    LL             N K    
Sbjct: 185 EDGGGLLRLRGKGGAHRNVPLHADAMQPVTDYLDERRALLGPFDAEDPLLVARNGKAITT 244

Query: 263 KMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
            M   +   WF+  A +    + AH  R   A      GA+ +EL A  G + +     Y
Sbjct: 245 GMIEYRVDQWFRRAAVRRPEGELAHVFRHTYAVGVLQNGASLNELQAVLGHQNLATTSIY 304

Query: 323 TKGADRIRLGIKNSRRISSVVDSDDP 348
           TK A      +     +   + +  P
Sbjct: 305 TKVAAEGLKDVARVAPVLRHLRATRP 330


>gi|189219748|ref|YP_001940389.1| Site-specific recombinase XerD [Methylacidiphilum infernorum V4]
 gi|189186606|gb|ACD83791.1| Site-specific recombinase XerD [Methylacidiphilum infernorum V4]
          Length = 280

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 73/221 (33%), Gaps = 26/221 (11%)

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAI-NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            PSS      ++R  F +  R++ +   +P   V  PK      R  + E +Q   +   
Sbjct: 42  KPSSIRVRFAALRSFFNFFYREKKINKESPFSQVMLPKPDRNLPRYLSLEQVQALLNAPQ 101

Query: 188 EGS------------------QPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQ 227
           +                    + +   E L  +GLR  +      ++    +    ++ +
Sbjct: 102 KKWEKEKEKGKKSRWNEWQWKRDQAWLETLYGAGLRVGELSSLKRKNFFPSDLALLVEGK 161

Query: 228 KTGTIITVE---LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284
           +      +            L   P   E  F+++  + +    F +  K     AG+++
Sbjct: 162 RKKERYCILGEVATASLCSYLESCPFESEFLFVSSRGKPLTPRFFQLSLKEYLAIAGLDQ 221

Query: 285 S--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           S   H +R   AT   + GA    +    G   +   + YT
Sbjct: 222 SISPHKLRHTFATHLLEGGADLRSIQELLGHAHLSTTQIYT 262


>gi|229192133|ref|ZP_04319101.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus cereus ATCC 10876]
 gi|228591340|gb|EEK49191.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus cereus ATCC 10876]
          Length = 376

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 44/293 (15%), Positives = 96/293 (32%), Gaps = 28/293 (9%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHT 129
              L+  + +     S   ++   ++     +++ + G+     I    + +  +     
Sbjct: 63  FSQLVEIWMQEKE-SSCRPSTLYQYKRILRSRVMPEFGEKRLSDIKPLTVHNFHQKLLKE 121

Query: 130 PSSAIQFLTS---MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             +     +    ++ +    V  E +  NP    +RPK K +    WT E+  +F  + 
Sbjct: 122 GLTTKYISSVDVMLKQILDKGVELEMINSNPAKKAKRPKVKKKAQASWTIEEAMKFMEYA 181

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT------------ 234
                  +AF   L++G+R  +      + +      I  Q+T T++             
Sbjct: 182 KIQGSYYIAFVLALHTGMRIGEVLALQWKDINFESKIIHVQRTLTLVDGKYELGETKTEA 241

Query: 235 ----VELPDGFMKLLAMTPIGK-----ETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284
               + + +  M  L      K     +      +K+ ++        KA      V   
Sbjct: 242 SNRMIPMTEELMGELLEYQSHKKDNSFDLLICTRNKKIVHPYTIRYQMKALCEAIDVPYI 301

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNS 336
             H +R+   TI  D+GA A  +    G   V      YT   +  ++ +   
Sbjct: 302 RFHDIRRTFTTILIDSGANAKVVSKLLGHTNVSTTLNIYTDVYEERQIEVTEM 354


>gi|134300616|ref|YP_001114112.1| phage integrase family protein [Desulfotomaculum reducens MI-1]
 gi|134053316|gb|ABO51287.1| phage integrase family protein [Desulfotomaculum reducens MI-1]
          Length = 367

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 44/304 (14%), Positives = 101/304 (33%), Gaps = 38/304 (12%)

Query: 59  EYINSPRKKPTTLKWLISEYRKSAHWGSL-----AVNSRISFESYFDQIIRKSGDFDYRK 113
           E       +P + + L+S+Y     W           +  ++  +  ++    GD +  +
Sbjct: 48  ETKLRKSLQPGS-QMLVSDYLDY--WLKRIQPSIEERTFKTYSWHLKRLKETLGDIELGE 104

Query: 114 ITTKHIRSGVESRKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
           +    ++  +   K  + +S  +  T+ R   + AV  E +  +P + +  P+   +  +
Sbjct: 105 LKVLLVQERLNELKDISETSVRKITTTFRTALRQAVVWELLEKDPTVGLRLPRNPKKEKK 164

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-----TQ 227
             + +++ +F +   E  +  L    L  +G+R  +      + L  +  ++K       
Sbjct: 165 VLSSDELIKFLNAAKEY-KYYLVLRILAVTGMRLGECLGLMWKDLNFDKGTMKILRSADS 223

Query: 228 KTGTIITVELPDG--------------FMKLLAMTPIGKET-------FFINNDKQKMNA 266
           KT  ++     D                          K T          + + + +  
Sbjct: 224 KTRKVLDKPKNDSSRRTVTIDKETVELLKTHRKKQAKRKVTSIRIEDELVFHVNGRPITH 283

Query: 267 TQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTK 324
                  K    KA +     H +R  + +I  DAG +   + +  G  T    A  Y+ 
Sbjct: 284 KAIDRTIKTALKKAELPMIRIHDLRHTAGSILLDAGYSLPTVSSLLGHSTPATTAAIYSH 343

Query: 325 GADR 328
              R
Sbjct: 344 AIRR 347


>gi|327412825|emb|CAX67831.1| shufflon-specific dna recombinase [Salmonella bongori]
          Length = 383

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 42/279 (15%), Positives = 91/279 (32%), Gaps = 23/279 (8%)

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121
              R K  +L   + +Y  +          +  F            +    +ITT  I S
Sbjct: 3   RPQRIKKMSLSKALDKYYATVSVHKRGH--QQEFYRVRVIQRHPLAEKMMDEITTVDIAS 60

Query: 122 GVESRKHTPSSAIQF----------LTSMRVLFKWA-VRQEYVAINPCLSVERPKRKTEG 170
             + R    ++              L  +  L+  A V       NP   V +PK     
Sbjct: 61  YRDDRLSQVNTRTGRCISGNTVRLELALLSSLYNLASVEWGTCRTNPVEMVRKPKISGGR 120

Query: 171 IRPWTKEDMQQFKSFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQ 227
            R  T ++ ++   ++ E +      F   + + +R  +      +H+     +  +   
Sbjct: 121 DRRLTSQEERRLSRYFQEQNPALHAIFHLAIETAMRQGEILSLRWEHIDLQHGVAHLPMT 180

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSA 286
           K G+   V L      LL        T  ++ +    +++ F   ++    +  + +   
Sbjct: 181 KNGSSRDVPLSRKARHLL-----QGMTVALSGNVFHYSSSGFKSAWRVALQRLNIVDLHF 235

Query: 287 HGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTK 324
           H +R  + +   + G     E+ A  G ++++    YT 
Sbjct: 236 HDLRHEAISRLFELGTLNVMEVAAISGHRSLNMLRRYTH 274


>gi|257887261|ref|ZP_05666914.1| phage integrase [Enterococcus faecium 1,141,733]
 gi|257823315|gb|EEV50247.1| phage integrase [Enterococcus faecium 1,141,733]
          Length = 378

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 52/365 (14%), Positives = 117/365 (32%), Gaps = 55/365 (15%)

Query: 15  RTRHGKIIYYFR--KGHGRRIRLPYPHE---STFIPAYMSALTGSTPKREY-INSPRKKP 68
           R R  +  YYF      G R ++             A    L+      +Y + +  +  
Sbjct: 6   RKRGKRWYYYFEDINDDGSRKKVEKVGGDTRPEAEAALRKVLSDIDETGQYFLGTDTRVK 65

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESR- 126
             L + + EY K     +L  N+  ++     + I    G      ++   +++ + +  
Sbjct: 66  QYLDFWMEEYVK----LNLKYNTYENYRFTIKNHINGYLGKKKLTDLSPALLQNFINAEF 121

Query: 127 -----KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK-----TEGIRPWTK 176
                K T +     L +   +  +      +  NP L V+ PK +      + ++  + 
Sbjct: 122 KKGYSKKTMTITHSVLKNALNMAVY--PWGLIKQNPMLYVKIPKYEERPTTKKDLKIISL 179

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK-------- 228
           ED         EG    +      Y+G+R  + C     ++  +  +I  +K        
Sbjct: 180 EDFDHMLEITPEGHPFYIPLNIGFYTGMRVGEVCGLTWDNVDFSNGTITVEKQMVKNDGA 239

Query: 229 --------TGTIITVELPDGFMKLLAMTP--------------IGKETFFINNDKQKMNA 266
                   + +  T+ +    + +L                  I           + +  
Sbjct: 240 WVYGTPKTSSSNRTIFIGQTLLAILKKHKKQQLENRMKYGKLYIDSNAVCTKEYGELVTP 299

Query: 267 TQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKG 325
           +      +  +    ++ + H +R   AT+  + GA   E+    G   +    +TY+  
Sbjct: 300 SVVKWNTRRISNALSLSFNFHSLRHTHATLLLENGAKMKEISDRLGHSRISITMDTYSHV 359

Query: 326 ADRIR 330
            D++R
Sbjct: 360 TDKMR 364


>gi|123967974|ref|YP_001008832.1| hypothetical protein A9601_04371 [Prochlorococcus marinus str.
           AS9601]
 gi|123198084|gb|ABM69725.1| Hypothetical protein A9601_04371 [Prochlorococcus marinus str.
           AS9601]
          Length = 321

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 55/310 (17%), Positives = 96/310 (30%), Gaps = 25/310 (8%)

Query: 31  RRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLA-V 89
           RR     P    F+   ++       +          P TL   I++Y         +  
Sbjct: 16  RRKNYVGPRSRNFLSRDLAESWADAVEERTKKVLNDTPVTLGEAINDYINGPLLLHRSAE 75

Query: 90  NSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWA 147
           N +       +      GD     +  KH     + R  K  P++ ++ L  +RVL  WA
Sbjct: 76  NEKYPLRVTAESW---LGDIPLSDLQIKHFAVWRDERLLKVKPNTVMRELRILRVLIDWA 132

Query: 148 VRQE--YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS-QPRLAFE-FLLYSG 203
             +    +  NP   +             T ED ++     S+ S Q  L      L +G
Sbjct: 133 RDERGAEIKDNPARQLRVRGTGDARAPFLTNEDEKRLLFELSQMSNQNHLRLTKLALTTG 192

Query: 204 LRCSDSCRAGVQHLQNNI-FSIKTQKTGTIIT-------VELPDGFMKLLAMTPIGKETF 255
            R S+      +++          +K    I        V  P+   K+L          
Sbjct: 193 FRRSELLSLTWRNIDLKKKLLYIYRKNCAAIDNSSGMRLVPFPEKAQKILEELQGRDGKV 252

Query: 256 FINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWK 314
              +     N       F     KAG+     H +R  + +    +G +A E+ A  G +
Sbjct: 253 IELSKGAARNG------FDKARKKAGLETLRFHDLRHIAISRMWRSGMSALEISACSGHR 306

Query: 315 TVDQAETYTK 324
            +     Y+ 
Sbjct: 307 DIKMLMRYSH 316


>gi|194462977|ref|NP_777346.2| hypothetical protein IN93_gp29 [Thermus phage IN93]
 gi|194077333|dbj|BAC55308.2| unnamed protein product [Thermus phage IN93]
          Length = 349

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 50/301 (16%), Positives = 102/301 (33%), Gaps = 31/301 (10%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWLISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDF 109
           L    PK      P      L   ++ + +  A    L   +  ++  Y   +       
Sbjct: 5   LARLLPKAGVGWVPDPSGLRLGDYLASWIEHRAATRDLRPTTLRNYHVYLKHV-EPIAHL 63

Query: 110 DYRKITTKHIRSGVESRKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168
              ++T    R+        +PS        +R   + A+R + +  NP  +V+ P+   
Sbjct: 64  PLSRLTPLTFRAFFAELAGFSPSHRRHIYQFLRAALRDAMRADLLDQNPMDAVDPPRGGA 123

Query: 169 -EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-- 225
               + W  E++ +F    S+G +    F  +L + LR  ++     +  + ++  ++  
Sbjct: 124 VRPAKAWKPEEVARFLE-ASKGHRLYPLFALMLATRLRPGEALALRWEDWEGDVLHVRHT 182

Query: 226 --------TQKT-GTIITVELPDG-----------FMKLLAMTPI--GKETFFINNDKQK 263
                     KT G++  + L                +  A TP        F ++    
Sbjct: 183 LRRDGTLGPAKTPGSVAPIYLDPDTQALLAWWRERLEEEKASTPDWQDHGLMFPSSKGTP 242

Query: 264 MNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAET 321
           +    F   F A   KAGV++ + HG+R    +++  AG     + A           + 
Sbjct: 243 LEYNNFKRAFYALQEKAGVSRITPHGLRHTYTSLALRAGLPPKVVAARLRHADPTFTVKV 302

Query: 322 Y 322
           Y
Sbjct: 303 Y 303


>gi|326331386|ref|ZP_08197676.1| tyrosine recombinase XerC [Nocardioidaceae bacterium Broad-1]
 gi|325950642|gb|EGD42692.1| tyrosine recombinase XerC [Nocardioidaceae bacterium Broad-1]
          Length = 331

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 42/301 (13%), Positives = 103/301 (34%), Gaps = 46/301 (15%)

Query: 71  LKWLISEY---RKSAHWGSLAVNSRISFESYFDQIIRKSGD-------------FDYRKI 114
              ++ ++   R +     L   SR ++        R+                     +
Sbjct: 2   FGDVVEDFLTDRATLTRRGLNDKSRSAYRQDIVAWARQLHVDAGGEPDADVLALVPISAL 61

Query: 115 TTKHIRSGVESRKHTPSSAI--QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
           T +++R    S +   ++A   + + ++R+   W   + ++ ++P L +E P+R +    
Sbjct: 62  TDQNVRIAYRSLRENSAAATCQRRVGTLRLFTHWLQLEGHLLVDPTLRIEAPERPSRLPA 121

Query: 173 PWTKEDMQQFKSFWSEG----------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---N 219
            W+ +++++     S            ++ R  F  L+ +G+R ++ C   V  ++   +
Sbjct: 122 GWSVDELRRLARVASTPREGTDRRRWPTRDRAIFAVLVTTGVRAAELCDLTVGSIRREPD 181

Query: 220 NIFSIKT-QKTGTIITVELPDGFMKLLAM----------TPIGKETFFINNDKQKMNATQ 268
               ++   K      + LP   +  +            T    +  F+    +++    
Sbjct: 182 GETLVRVIGKGDKQRNLPLPPEAVDAVDAYLAELEARFGTRDPADNLFVLTSGKQLRPGA 241

Query: 269 FSIWFKAKATKAGVNKS----AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            +   +     AGV K     AH  R  +A     +G     +    G + +     Y K
Sbjct: 242 LNHLVETWIRLAGVPKQPGEAAHAFRHSAAKGLIRSGVPVPAVQGLLGHEDLKTTGIYVK 301

Query: 325 G 325
            
Sbjct: 302 A 302


>gi|296158318|ref|ZP_06841149.1| integrase family protein [Burkholderia sp. Ch1-1]
 gi|295891262|gb|EFG71049.1| integrase family protein [Burkholderia sp. Ch1-1]
          Length = 348

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 64/328 (19%), Positives = 108/328 (32%), Gaps = 26/328 (7%)

Query: 15  RTRHGKIIYY--FRKGHGRRIR-LPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
           R R G   ++  FR   G RIR             Y   L     +   +    K+  T 
Sbjct: 4   RKRKGSPTWHIDFRTPGGERIRQSTGTANKKEAEEYHDRLKAELWRVSKLG--EKQKRTW 61

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV-----ESR 126
                   K +      VN+RI    +     +         IT   I   +      ++
Sbjct: 62  DEAAVRMLKESAHLRSFVNTRI----HLRYFRKFFAGRLLESITRDEIYEALPELSARTK 117

Query: 127 KHTPSSA---IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
           +  P SA     +L +MR +F  A+  E++A  P L  +  K   +  R  T+++ Q+  
Sbjct: 118 QPKPLSAKTKNLYLGTMRHMFNLAIEWEWLAQAPIL--KAAKVSNKRFRFLTRDEAQRLI 175

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----NNIFSIKTQKTGTIITVELPD 239
           +  S     R        +GLR ++        +              K    I V L D
Sbjct: 176 AAIST-EWLRDVAILGFATGLRRANLLGLEWSQVDLVNRRAWIHADQAKARKAIGVPLND 234

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISA 298
             + ++        T       + +     S  ++ +  +AG+ +   H VR   A+  A
Sbjct: 235 EAVAVIRRWIGRHPTHVFVRRGR-IIPNVISEQWQNQCKRAGIEDFRFHDVRHTWASWHA 293

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGA 326
            AG   + LM   GW   +    Y   A
Sbjct: 294 QAGTPLNRLMELGGWTKYEHVLRYAHLA 321


>gi|212703032|ref|ZP_03311160.1| hypothetical protein DESPIG_01070 [Desulfovibrio piger ATCC 29098]
 gi|212673620|gb|EEB34103.1| hypothetical protein DESPIG_01070 [Desulfovibrio piger ATCC 29098]
          Length = 327

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 50/275 (18%), Positives = 97/275 (35%), Gaps = 35/275 (12%)

Query: 85  GSLAVNSRISFESYFDQII-----RKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQF 136
             L+  ++I++ +   Q+      R +      +++ KHI++ +          S+  + 
Sbjct: 33  RGLSPTTQIAYGTDLRQLALFLAQRGASLARPAEVSKKHIQAWLARLYALGEAKSTMARK 92

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFWSEGS-- 190
           L + R  F++  R      N    V  PK++    R    +     +    +    GS  
Sbjct: 93  LAAARTFFRYQQRMGRTENNVAAQVRNPKQEQRHPRVLNVDQAFAVLDTPDALAGTGSPR 152

Query: 191 -----------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-ELP 238
                      +     E L  SGLR S++    V  L+ +   ++    G    +  L 
Sbjct: 153 IPPATGDALAARDHALAELLYGSGLRISEALGLDVTDLRLDESVVRVFGKGARERMSPLS 212

Query: 239 DGFMKLLAM--------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGV 289
           D  +  L           P G++  F+     +++  +     +     AGV   S H +
Sbjct: 213 DTSVTALRAWLEQRGTLAPEGEKALFVGARGGRLDRREAMRRIERLCRNAGVEPVSPHAL 272

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           R   AT   DAGA    +    G + +   + YT+
Sbjct: 273 RHSFATHLLDAGADLRSVQELLGHQRLTTTQRYTR 307


>gi|170289596|ref|YP_001739834.1| integrase family protein [Thermotoga sp. RQ2]
 gi|281413176|ref|YP_003347255.1| integrase family protein [Thermotoga naphthophila RKU-10]
 gi|170177099|gb|ACB10151.1| integrase family protein [Thermotoga sp. RQ2]
 gi|281374279|gb|ADA67841.1| integrase family protein [Thermotoga naphthophila RKU-10]
          Length = 253

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 44/254 (17%), Positives = 86/254 (33%), Gaps = 32/254 (12%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES-RKHTPSSAIQFLTSMRVL 143
              +  +   + S   +  R      +  +T +  +  + +  K+TP++    L  ++  
Sbjct: 12  KKRSERTLYQYRSILREFTR------FEPVTPETWKEYLNTISKNTPATQRNKLVVVKNY 65

Query: 144 FKWAVRQEYVAI-----NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEF 198
             W   +  + I     N       P R T   +    +++++        S  R  F+ 
Sbjct: 66  LNWKADRGLLNIEERFWNEAE----PPRHTVLPKAIELDEVRRIIEACD-NSLYRAIFKV 120

Query: 199 LLYSGLRCSDSCRAGVQHLQNN---IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF 255
           L  +G+R S+     V  +  N      IK +     I + +    ++ L         F
Sbjct: 121 LANTGMRVSEIVNLSVHDISVNETARIRIKGKGNKERI-INISKELVEELM-----NSGF 174

Query: 256 FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGW 313
           F     +K +        K  A KAG+ K  + H  R   A    + G   +++ A  G 
Sbjct: 175 FE----KKPSVRSIQRAVKRYARKAGIKKKVTPHIFRHSFAVALIERGVPLNKIQALLGH 230

Query: 314 KTVDQAETYTKGAD 327
             +     Y K A 
Sbjct: 231 ANISTTSIYLKIAS 244


>gi|49146142|ref|YP_025580.1| site-specific recombinase [Mycobacterium ulcerans Agy99]
 gi|42414776|emb|CAE46869.1| possible site-specific recombinase [Mycobacterium ulcerans Agy99]
          Length = 345

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 45/314 (14%), Positives = 98/314 (31%), Gaps = 57/314 (18%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQII-------RKSGDFDYRKITTKHIRSGVESRKHT 129
           E+         + ++  ++   F+ +                  +  + +R+       T
Sbjct: 21  EFLADRAIRKPSPHTTKAYRQDFEAVALLLAGGADAISTLPTNALNKESLRAAFAVYAET 80

Query: 130 --PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ------- 180
              +S  +  ++   L  +      +  NP  ++ RPK      + +T + +        
Sbjct: 81  HSAASIRRCWSTWNTLCTFLYTANLLDANPMPAIGRPKVPKALPKSYTADAVNNLIAAID 140

Query: 181 -----QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---NNIFSIKTQKTGTI 232
                  +S W E  + R      L +GLR  +  RA +  ++   +      + K    
Sbjct: 141 TDDGSARRSNWPE--RDRAIIFTALLTGLRADELIRANIGDIRCNADGGVLHVSGKGNKD 198

Query: 233 ITVELPDGFMKLLAM-----------------------TPIGKETFFINNDKQKMNATQF 269
             +      +++L                                 F+ +D +++     
Sbjct: 199 RRIPCDTKLIEMLQRYLQTREDRIPHLRKRSASPDVMGRFSPTAPLFVGSDGERITRGTL 258

Query: 270 SIWFKAKATKAGVNKS------AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
                    KAG+N         HG+R   AT  A+A  + + LM   G +++  ++ Y 
Sbjct: 259 QYRILRGFKKAGINNDRAAGALVHGLRHTFATELANANVSVYALMKLLGHESMVTSQRYV 318

Query: 324 --KGADRIRLGIKN 335
               AD  R   +N
Sbjct: 319 DGAAADTRRAAERN 332


>gi|54303070|ref|YP_133063.1| hypothetical protein PBPRB1396 [Photobacterium profundum SS9]
 gi|46916498|emb|CAG23263.1| hypothetical protein PBPRB1396 [Photobacterium profundum SS9]
          Length = 295

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 41/285 (14%), Positives = 90/285 (31%), Gaps = 21/285 (7%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPS 131
           L  ++  +         +  ++     +I +         +TT  ++    S  + H+ S
Sbjct: 12  LYEQHLTNLTLQGKRPATIDAYSRAVRRISQFFDRCP-DAMTTADLKQYFASLIQTHSWS 70

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           +       ++  ++  + +E+  ++    + +P +  +     T + +    S      +
Sbjct: 71  TVKLDRNGLQFFYRHTLEKEWQWLD----IVKPPQSKKLPDIITAQQVALLISMTK--QK 124

Query: 192 PRLAFEFLLYS-GLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFMKLLAM- 247
               F   LY+ GLR  +     V  +  +     I+  K G    V +P   +  L   
Sbjct: 125 RYQIFFLTLYTMGLRLGEGLSLTVHDIDQHTMQVHIRDGKGGKDRLVPVPQRTLNALRAH 184

Query: 248 -TPIGKETFFINNDK----QKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
                                M+        K      G+NK  S H +R   AT   + 
Sbjct: 185 WLTHRHPRLIFPGKGCNTDNPMDRGGVQKAMKLVLKDCGINKPISPHSLRHCFATHLLEQ 244

Query: 301 GATAHELMATYGWKTVDQAETYTKGAD-RIRLGIKNSRRISSVVD 344
           G     L    G  +++    YT+    + R       R++  + 
Sbjct: 245 GLDLRSLQILLGHASLNTTARYTRMTQIKQRDAALAINRLADALT 289


>gi|10955493|ref|NP_065345.1| site-specific recombinase [Escherichia coli]
 gi|48994|emb|CAA44100.1| site-specific recombinase [Escherichia coli]
 gi|9971687|dbj|BAB12638.1| rci [Escherichia coli]
          Length = 374

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 45/274 (16%), Positives = 97/274 (35%), Gaps = 19/274 (6%)

Query: 65  RKKPTTLKWLISEYRKSAHWGS---LAVNSRIS---FESYFDQIIRKSGDFDYRKITTKH 118
           + +  T+   + +Y K+        L    R++        ++ +      D      + 
Sbjct: 6   KIRKMTISRALDKYLKTVSIHKKGHLQEFYRVNVIKRHPIAERYMDDITTVDIANYRDQR 65

Query: 119 IRSG--VESRKHTPSSAIQFLTSMRVLFKWA-VRQEYVAINPCLSVERPKRKTEGIRPWT 175
           +        R+ T ++    L  +  LF  A V      +NP   V +PK  +   R  T
Sbjct: 66  LAQINPRTGRQITGNTVRLELALLSSLFNIARVEWGTCRMNPVELVRKPKISSGRDRRLT 125

Query: 176 KEDMQQFKSFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTGTI 232
             + ++   ++ E +Q   + F   L + +R  +      +H+     +  + T K G  
Sbjct: 126 SGEERRLSRYFKEKNQALYVIFHLALETAMRQGEILSLRWEHVDLQHGVAHLPTTKNGAP 185

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRK 291
             V L       L M P       +N +     ++ F   ++    +  + N   H +R 
Sbjct: 186 RDVPLSRKARNYLQMLPTQ-----LNGNIFSYTSSGFKSAWRTALQELKIENLHFHDLRH 240

Query: 292 FSATISADAG-ATAHELMATYGWKTVDQAETYTK 324
            + +   + G     E+ A  G ++++  + YT 
Sbjct: 241 EAISRFFELGTLNVIEVAAISGHRSLNMLKRYTH 274


>gi|56461653|ref|YP_156934.1| site-specific recombinase XerC [Idiomarina loihiensis L2TR]
 gi|56180663|gb|AAV83385.1| Site-specific recombinase XerC [Idiomarina loihiensis L2TR]
          Length = 300

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 36/271 (13%), Positives = 84/271 (30%), Gaps = 26/271 (9%)

Query: 85  GSLAVNSRISFESYFDQ------IIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLT 138
             LA  +  +++           + + +     R    + +  G         S    L+
Sbjct: 18  RGLAELTLKNYQRLIAADLTALELQKITEPKALRVPVIERLLVGWRRNGLGERSIALKLS 77

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE---GSQPRLA 195
           + R   ++ V    +  NP +SV  PK      +    + +       ++     +    
Sbjct: 78  AWRTFCQFMVESNAMDDNPAMSVSAPKIPKRLPKNLDVDSISHLLDLPTDDDLAIRDAAM 137

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV------------ELPDGFMK 243
            E L  SG+R ++     + H+ + +  ++    G+   +            +       
Sbjct: 138 MELLYASGIRLAELVSLDLDHIDHRMMQLRVTGKGSKTRIVPFGRCAEKALKKWLSVRQA 197

Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAG 301
            L   P  +   F++   Q+++             + GV  +   H +R   A+   ++ 
Sbjct: 198 WLNQKP--ELALFVSKRLQRISPRTVQQRLNYWGKQQGVVGDLHPHKLRHSFASHMLESS 255

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLG 332
                +    G   +   + YT   D  RL 
Sbjct: 256 GDLRAVQEMLGHANLSTTQVYTH-LDFKRLA 285


>gi|168238497|ref|ZP_02663555.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|194734720|ref|YP_002114907.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|194710222|gb|ACF89443.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197288650|gb|EDY28025.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
          Length = 359

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 49/287 (17%), Positives = 96/287 (33%), Gaps = 34/287 (11%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--- 126
           T+   I  Y       SL+VN+     +    +  K G+    ++TT+HI   +ES    
Sbjct: 75  TVSAWIDRYEVLLQRRSLSVNTYKIRGNQLVTVREKMGEIILAEVTTRHIAKFLESWITE 134

Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
            K+T + A++  + +  +F+ A+ + ++  NP  +   P+ K    R      ++ + + 
Sbjct: 135 GKNTMAGAMR--SVLSDMFREAIVEGHIVKNPVEATRIPEVKVARERL----QLETYNAT 188

Query: 186 WSEGSQPRLAF----EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241
            +        F    +  L +G R  D        + +N   +   KTG  I + L    
Sbjct: 189 RAAAEHMPAWFPLAMDLALVTGQRREDIVNMKFSDVFDNRLYVTQIKTGMKIAIPLSLTL 248

Query: 242 MK--------LLAMTPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNKS-- 285
                     +     + +  F I      N+    ++    +  F      +GV  S  
Sbjct: 249 RATGLRLGTVIDRCRLVSRTDFMISAGIRKNSPTGNIHPDGLTKKFVKARKISGVKFSDN 308

Query: 286 ---AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
               H +R   A                 G  + +  + Y    D  
Sbjct: 309 PPTFHEIR-SLAGRLYKDERVEEFAQKLLGHTSENTTKLYLDERDNK 354


>gi|42524456|ref|NP_969836.1| site-specific recombinase [Bdellovibrio bacteriovorus HD100]
 gi|39576665|emb|CAE80829.1| site-specific recombinase [Bdellovibrio bacteriovorus HD100]
          Length = 294

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 44/283 (15%), Positives = 99/283 (34%), Gaps = 17/283 (6%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH------IRSGVESRK 127
           I +Y K   +  S +  +   +     Q      D   +  +          R+      
Sbjct: 11  IDKYLKYMTFIKSASPLTIKHYSLDLMQ-AFNYEDPSVKAKSISESELLSTARAAFNQWA 69

Query: 128 H-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQF 182
           H + +S  +   +++  F WA  +     +  + +  PK   +     + ++    ++ F
Sbjct: 70  HLSLASRNRKAATLKSFFSWAFEESLTEKDLSVQITCPKVPKKLPHFVSVDEALSVLKSF 129

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
            S      + ++ F  L   GLR S++C      +Q +   ++ +  G+   V       
Sbjct: 130 DSETKIPLKEKVLFLLLYGGGLRVSEACNLKWSEVQTSQKVLRVKGKGSKERVVALPSLT 189

Query: 243 KLLAMTPIGKETFFINNDK-QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISAD 299
             + +    + +F       + +N+       +    +AG+      H +R   AT    
Sbjct: 190 VEVLLKWKKESSFDEYVFGEKPLNSRTAYEMVRQSGIRAGLLKPLHPHALRHSFATHLLS 249

Query: 300 AGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSRRISS 341
           +GA    L    G +++   E YT  G D++   ++N   +  
Sbjct: 250 SGANLRTLQELLGHESLQATEKYTHLGIDQLARTMENLHPLGK 292


>gi|71909266|ref|YP_286853.1| Phage integrase [Dechloromonas aromatica RCB]
 gi|71848887|gb|AAZ48383.1| Phage integrase [Dechloromonas aromatica RCB]
          Length = 340

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 49/333 (14%), Positives = 99/333 (29%), Gaps = 31/333 (9%)

Query: 15  RTRHGKIIYYFRKGHGRRI----RLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
           R R G      R+     +    +L    E      +  A+        Y++    +  T
Sbjct: 5   RQRSGGWQVRVRRQGYPDVVKTFKLRQDGEK-----WARAIERELDMGCYVHRTEAERMT 59

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
           L  L+  Y K            +        +  +   +    +T   +    + R    
Sbjct: 60  LAELLDRYGKEVSPQHKGHREELWKIGVI--LRDRIAKYSLVALTPMLVADYRDRRLQVV 117

Query: 131 S--SAIQFLTSMRVLFKWA-VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           +  +A   L  +   +K A         NP   ++RP    E  R  ++ +++       
Sbjct: 118 ADATARHELNIISAAYKVAAREWGIPVSNPVSQIKRPPAGRERKRRISQAEIEAIIQHSK 177

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLL 245
               P       + +G+R  +  R   Q +        +   K G    V L    + +L
Sbjct: 178 TRELPDF-LCLAVTTGMRRGEIIRLRWQDIDMGRRLAYLSDTKNGEDRVVPLSSEALAVL 236

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKAT------KAGV--------NKSAHGVRK 291
              P   +    + + +  +        +A+         AGV        +   H  R 
Sbjct: 237 QAMPRRFDGRLFSLEPRGFSKAMRKSVVRARRAYEAESSLAGVQPDPEFLCDLRLHDARH 296

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK 324
            + +   + G    E+ +  G KT+   + YT 
Sbjct: 297 EAVSAFFERGLDVMEVASISGHKTLSCLKRYTH 329


>gi|295402897|ref|ZP_06812822.1| integrase family protein [Geobacillus thermoglucosidasius C56-YS93]
 gi|294975066|gb|EFG50719.1| integrase family protein [Geobacillus thermoglucosidasius C56-YS93]
          Length = 301

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 40/286 (13%), Positives = 92/286 (32%), Gaps = 36/286 (12%)

Query: 88  AVNSRISFE----SYFDQIIRKSGDFDYRKITTKHIRSGVESRKH----TPSSAIQFLTS 139
              +  S+      +     ++ G++   +     I+  +   KH     P++  +++ +
Sbjct: 18  DEKTIASYRTTVVHFLTWKEQRDGEYIIEETRPIDIKEYISYLKHQCKRKPATINKYIAA 77

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKR---KTEGIRPW-TKEDMQQFKSFWSE------G 189
           ++V F + +    +  NP   ++  K           W TKE+  +F S+          
Sbjct: 78  LKVFFAFLLSSGIIKDNPMTRIKVEKLDYANGANQTKWLTKEEQDRFISYVQLEPNEFKR 137

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVEL-------- 237
            +     + +LYSGLR ++     +  +    ++    I+  K     TV L        
Sbjct: 138 LRNLAIIDLMLYSGLRVNEVSSLEINDIITKDKDVQVIIREGKGNKFATVILVQKHAKNL 197

Query: 238 ---PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFS 293
                    L           F++                  A  A ++  + H  R   
Sbjct: 198 RKWLKYRKGLDKDIHKSSPRLFVSERSPFFTERGIQKMLNKYAELANMDHITPHRFRHSF 257

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
               A+AG     +      +++     Y + +   +  I+  R++
Sbjct: 258 CKNLANAGTPIELIRRLARHESIQTTAIYLESSQEEQ--IEALRKV 301


>gi|227823255|ref|YP_002827227.1| site-specific tyrosine recombinase XerD [Sinorhizobium fredii
           NGR234]
 gi|227342256|gb|ACP26474.1| tyrosine recombinase XerD [Sinorhizobium fredii NGR234]
          Length = 313

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 44/270 (16%), Positives = 87/270 (32%), Gaps = 30/270 (11%)

Query: 85  GSLAVNSRISFESYFD---QIIRKSGDF--DYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
              A+N+  S+E         +R SG           K   S +       SS  + L++
Sbjct: 20  RGAAINTLQSYERDLRDALAFLRSSGARLNSATADDLKRYLSHLAGEGFKSSSQARRLSA 79

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-----------E 188
           +R  +K+   +     +P   ++ PK+     +  + +D+ +                  
Sbjct: 80  LRQFYKFLYAEGLRGDDPTGILDAPKKARALPKTLSIDDVTRLIGQAEAEAAAGGEDAFA 139

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHL-QNNIFSIKTQKTGTIITVELPDGFMKLLA- 246
             +     E L  +G+R S+        L QN  F +   K      V L    ++ +  
Sbjct: 140 RLRMHALIELLYATGMRVSELVSLPASVLAQNGRFLVIRGKGNKERLVPLSQAAIRAMRT 199

Query: 247 -------MTPIGKETFFINNDKQ--KMNATQFSIWFKAKATKAGVNK---SAHGVRKFSA 294
                       +  +   +  +   +    F+   K+ A +AG+     S H +R   A
Sbjct: 200 YGDALRRRAAEAESPWLFPSSGKSGHLPRQVFARDLKSLAARAGIRVAVISPHVLRHAFA 259

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324
           +     GA    +    G   +   + YT 
Sbjct: 260 SHLLANGADLRAVQELLGHSDISTTQIYTH 289


>gi|167620939|ref|ZP_02389570.1| putative integrase/recombinase [Burkholderia thailandensis Bt4]
          Length = 342

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 48/327 (14%), Positives = 105/327 (32%), Gaps = 24/327 (7%)

Query: 27  KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGS 86
           +  G   +            + +++     +  +++    + TT   L+  Y        
Sbjct: 17  RRKGYPTQTKTFETKKAAEKWATSVENEMNRGSFVDRSELETTTFGELLDRYAVEVTTAK 76

Query: 87  LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLF 144
               + +       +            + +    S    R  T  P++  + +  +  +F
Sbjct: 77  RGRETEMVRIRALKK--HPLAARTLASLRSMDFASYRNERLKTCSPATVKREMVIISHVF 134

Query: 145 KWAV-RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF--KSFWSEGSQPRLAFEFLLY 201
             A         NP   + +P+ K    R    ++  +    +  S  +         + 
Sbjct: 135 THANNEWSLPVGNPLAGIAKPREKDHRERRLRDDEESRLVEAAHNSRAATLSFCIVLAIE 194

Query: 202 SGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPI----GKETF 255
           +G+R  +  +   + +   N+   +   K G   +V L +     +   P     G+ T 
Sbjct: 195 TGMRAGEIVKLRWEQIDLANHTIRLNLTKNGHARSVPLSERAEAAIRALPRSIHGGRLTS 254

Query: 256 FINNDKQKMNATQFSIWFKAKATKAG-VNKSAHGVRKFSATISADAGATAHELMATYGWK 314
           F ++          S  F+    +AG V    H +R  +A+  A     A  L    GWK
Sbjct: 255 FYDSRG-------LSAAFRRACERAGVVGLRFHDLRHEAASRLAPH-MPASTLAKVMGWK 306

Query: 315 TVDQAETYTKGADRIRLGIKNSRRISS 341
           T+  A  Y    D+    +   R++S+
Sbjct: 307 TLQMAMRYYNPTDQEL--VTAVRKVSA 331


>gi|149195410|ref|ZP_01872494.1| Integrase [Caminibacter mediatlanticus TB-2]
 gi|149134460|gb|EDM22952.1| Integrase [Caminibacter mediatlanticus TB-2]
          Length = 315

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 51/303 (16%), Positives = 102/303 (33%), Gaps = 37/303 (12%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIR--------KSGDFDYRKITTKHIRSGVE 124
           WL     K     + + N+  +F++  ++ I            D D++      I++ + 
Sbjct: 16  WLNEA-IKDRKLLNQSENTIYTFKNSIEKFIEFCYLERINDYPDLDFKDFNKYFIKNYIS 74

Query: 125 SRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER--PKRKTEGIRPWTKEDM 179
             K     PSS    L  +   FK+        ++    +++   K +   I  ++ E++
Sbjct: 75  YLKDLNYKPSSINTHLKYLYAFFKFISENNEDGVDLLYKLDKIFLKEEKNVIYTFSNEEL 134

Query: 180 QQF-------KSFWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQ--NNIFSIK-TQ 227
           ++         +     +  R AF   L   +G R S+        ++     F +K T 
Sbjct: 135 EKIQLALINKLNLTKSYTTFRNAFIVYLLSLTGARVSEIINLKNDDIKENGEFFYLKLTG 194

Query: 228 KTGTIITVEL--------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK 279
           K      V +         +   +L     I  E F  +    K   T    + K     
Sbjct: 195 KGNKERIVPIEKDYIIDFLEKLQELKDKDNINSEYFLPDKQGYKTAITSIQSFNKTLLKN 254

Query: 280 AGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADRIRLGIKNSRR 338
            G+  + H  R   ATI  + G   + +    G  ++   A  Y K  D+ +   +  R+
Sbjct: 255 LGIKGNIHQYRHTFATILLEKGVDINTIKELLGHSSIQTTASYYAKVTDKAK--QEAIRK 312

Query: 339 ISS 341
           +  
Sbjct: 313 LKE 315


>gi|67925842|ref|ZP_00519134.1| Phage integrase:Phage integrase, N-terminal SAM-like [Crocosphaera
           watsonii WH 8501]
 gi|67852313|gb|EAM47780.1| Phage integrase:Phage integrase, N-terminal SAM-like [Crocosphaera
           watsonii WH 8501]
          Length = 290

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 46/242 (19%), Positives = 91/242 (37%), Gaps = 8/242 (3%)

Query: 88  AVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFK 145
           +  +R  ++S   Q IR  G    + +          +E + + PS+    L++++ LF 
Sbjct: 23  SKLTRQHYQSNIKQFIRFIGLSLEEVKIEDINGFVRMLELKGNKPSTIKGKLSTVKSLFS 82

Query: 146 WAVRQEYVAINPCLSVERPKRKTE-GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGL 204
           +A +  Y+  N  + V+ PK            ED+++     +   + RL  + + + GL
Sbjct: 83  FAYKVGYLTSNVTVLVKSPKVNKRTASMRIEHEDIRKMVDGTNS-KRDRLIIKMMFFLGL 141

Query: 205 RCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ-- 262
           R S+  R        N   I  +           + F++L  +      TF     ++  
Sbjct: 142 RVSEVLRLKWSDFYQNKVFISGKGNKERSLNLPEELFLELSELKSEFNPTFVFTAYQKDE 201

Query: 263 KMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
           ++     +I       + G++     H  R   +  S D G   H L  + G  +V   E
Sbjct: 202 QLKRQAVNIMLNRLKKRLGIDANIHPHKFRHEHSMTSLDNGCDIHLLSRSLGHGSVSITE 261

Query: 321 TY 322
           +Y
Sbjct: 262 SY 263


>gi|224370500|ref|YP_002604664.1| Phage integrase/recombinase family protein [Desulfobacterium
           autotrophicum HRM2]
 gi|223693217|gb|ACN16500.1| Phage integrase/recombinase family protein [Desulfobacterium
           autotrophicum HRM2]
          Length = 301

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 38/274 (13%), Positives = 83/274 (30%), Gaps = 31/274 (11%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTK------HIRSGVESRKHTPSSAIQFLTSMR 141
           + NS  +++      +   G     ++ T         +  ++ +  +  +    L+++ 
Sbjct: 19  SDNSVDTYDRAIRTFLDFLGISSPEELRTITHGHVIAFKKFLQDQGRSARTINNRLSAIS 78

Query: 142 VLFKWAVRQEYVAINPCLSVER--PKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLA 195
            LF   + Q+ V IN    V+R          +     +++   +        G + +  
Sbjct: 79  SLFNHLIDQQVVKINVAQGVKRMPVNASRVEAKVLAPVEVRNLLNSPDVSKLQGLRDKAI 138

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIK---TQKTGTIITVELPDGFMKLLA------ 246
              L ++G R S+ C   V+               K G    + +       L       
Sbjct: 139 LSTLFFTGCRVSEVCSLKVRDFYEEQGFFVLDFWVKGGKRNRMAINQELQITLDQYLTET 198

Query: 247 -MTPIGKETFFI--------NNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATI 296
              P      F+         + K+K++       F   A   G+   + H  R    T 
Sbjct: 199 GHGPDQASFLFLPVKSGYKALDPKRKLSRRTIDHLFNKYANTIGIAGITPHSARATFITQ 258

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
           + +       +  T G   +   + Y K   + R
Sbjct: 259 ALENNCPIEAVQKTVGHAQIKTTQMYDKRTAKYR 292


>gi|224369008|ref|YP_002603172.1| predicted bacteriophage P4 integrase [Desulfobacterium
           autotrophicum HRM2]
 gi|223691725|gb|ACN15008.1| predicted bacteriophage P4 integrase [Desulfobacterium
           autotrophicum HRM2]
          Length = 386

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 63/346 (18%), Positives = 123/346 (35%), Gaps = 50/346 (14%)

Query: 22  IYYFRKGHGRRIR-LPYPHESTFI-----------PAYMSAL--TGSTPKREYINSPRKK 67
           ++YF+K    ++R LP P++ +               Y+  +   G   K E +    + 
Sbjct: 18  VWYFQK----KVRGLPKPYKFSLDTKSVVEARKKRDEYLLEVKVNGFIQKNEVVVVNPED 73

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR 126
            T    +  ++ +      ++ ++   +    +  I+ + G+     IT   I   V   
Sbjct: 74  GTCFGEIAVQWAELKK-TKVSKSTIQEYRKVMNKYILPQFGNRRIDSITGLEIEVLVSKL 132

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
           K    +    LT  + + ++A + + +  NP   V+  KR++  I P +  +++ F    
Sbjct: 133 KCGGKTKNNILTPFKDVMRFAKKHKLIQHNPFDDVDSIKRESSEIHPLSLGEIKLFLEHV 192

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------------GTIIT 234
            +  +P   F FL ++G R  ++     + +      I   KT            G+I T
Sbjct: 193 PDYYRPL--FTFLFFTGARFGEAAALKWKRVDLTNGMIHIAKTYVRGEYKDPKTKGSIRT 250

Query: 235 VELPD----GFMKLLAMTPIGKETFFINNDKQKMNATQFS-IWFKAKATKAGV--NKSA- 286
           V+L         +    T    E  F+N   + ++    +   F+    KAG+  NKS  
Sbjct: 251 VKLSPIVIDALHQQREHTMDKSEFVFLNTLGRHIHPHSVNLHVFRPTLEKAGLSANKSFS 310

Query: 287 -------HGVRKFSATISADAGATAHELMATYGWKTVDQ-AETYTK 324
                     R    T S D       +    G  T     E Y +
Sbjct: 311 AATRRSCKDTRSSYITNSLDNNERMGFVQKQVGHTTTKMIVEHYYR 356


>gi|254450213|ref|ZP_05063650.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198264619|gb|EDY88889.1| phage integrase [Octadecabacter antarcticus 238]
          Length = 315

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 43/266 (16%), Positives = 82/266 (30%), Gaps = 17/266 (6%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132
            L     +     ++   ++              G       T   +R+       T  +
Sbjct: 28  ALRQRMIEDMRIRAIGETTQKGHIRAIKHFATFLGRSPDTA-TPDELRAYQLHMTDTDVT 86

Query: 133 A---IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM-QQFKSFWSE 188
                  + S+R+ F     +E +       ++  ++        + E++     +    
Sbjct: 87  TSTFNTRIVSLRLFFGVTCGREEMKR----YMQFRRKPRRLPVVLSVEEIGDLLAAVPGP 142

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLLA 246
           G   R A      +GLR S+ C   V  + +      +   K G      L  G + LL 
Sbjct: 143 GLTYRAALGISYGAGLRASEVCHLKVVDIDSGRMLIHVDEGKNGKDRKAMLSPGLLDLLR 202

Query: 247 ---MTPIGKETFFINNDK-QKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
              +    +   F    K   ++  Q +  F +    AG+NK  + H +R   AT   +A
Sbjct: 203 EYWLEARPEGWLFPGKPKINPLSPRQLNRAFTSAKHMAGINKPATLHTLRHSFATHLLEA 262

Query: 301 GATAHELMATYGWKTVDQAETYTKGA 326
           G     +    G   +     YT  A
Sbjct: 263 GTDVRVIQVLLGHSKLSTTARYTHVA 288


>gi|323138675|ref|ZP_08073741.1| integrase family protein [Methylocystis sp. ATCC 49242]
 gi|322396030|gb|EFX98565.1| integrase family protein [Methylocystis sp. ATCC 49242]
          Length = 408

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 41/280 (14%), Positives = 92/280 (32%), Gaps = 18/280 (6%)

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITT 116
                S +    ++  ++  + +         NS    E    + I+ + GD     ++ 
Sbjct: 95  AAAKVSQQPARDSIAEIVDLFLEKHVKPKTRPNSARETERLLRREIVARWGDRKLSTVSR 154

Query: 117 KHIRSGVESRKHT-PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
             +R  +E      P  + + L + R L  WAV ++ +  +PC  ++    +    R  +
Sbjct: 155 GDVRRLLEETAERAPVLSNRVLAAFRKLCGWAVERDIIVASPCDKLKPVAAENSRDRVLS 214

Query: 176 KEDMQQF-KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKTG 230
            +++    ++    G      F+ L  +G R S+        +              K G
Sbjct: 215 DDELAAVWRAVDGLGFPFGPMFQLLALTGQRRSEVAGMTWAEVDLASALWTIPAARSKNG 274

Query: 231 TIITVELPDGFMKLLAMTPI--GKETFFINNDKQKMNATQFSIW-----FKAKATKAGVN 283
               V L    +K++A  P   G + F  ++     +    +           A  +G +
Sbjct: 275 LEHRVPLSPQAVKIIAALPRFAGGQGFLFSSGDTPPSGFSRAKRRLDDALSTMAKASGDD 334

Query: 284 K----SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
                + H +R+ + +  A  G     +       +   A
Sbjct: 335 GMPPFALHDLRRTAVSGMARLGVALPIIERVVNHISGSFA 374


>gi|255527617|ref|ZP_05394479.1| integrase family protein [Clostridium carboxidivorans P7]
 gi|296187660|ref|ZP_06856054.1| site-specific recombinase, phage integrase family [Clostridium
           carboxidivorans P7]
 gi|255508689|gb|EET85067.1| integrase family protein [Clostridium carboxidivorans P7]
 gi|296047617|gb|EFG87057.1| site-specific recombinase, phage integrase family [Clostridium
           carboxidivorans P7]
          Length = 329

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 42/265 (15%), Positives = 91/265 (34%), Gaps = 15/265 (5%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS----SAIQFLTSMRVL 143
           +  S   ++S  + ++R  G    + ITT+ +R  +       S    S       +   
Sbjct: 68  SEKSIKYYKSTIENMLRTLG-KPVKHITTEDLRGYLAEYHKRSSCSKVSIDNIRRILSTF 126

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203
           F W   + Y+  +P   + + K        +T E+++  +    E  +     + L  +G
Sbjct: 127 FSWLEDENYILKSPVRRIHKIKTGKIVKEVYTDENLEIMRDSCKE-IRDLAIIDLLNSTG 185

Query: 204 LRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDG----FMKLLAMTPIGKETFFIN 258
           +R  +  +  +  +  N    I   K      V             +          F++
Sbjct: 186 IRVGELVKLNIDDIDFNERECIVEGKGDKQRRVYFDARTKIHLQNYINSRVDNNRALFVS 245

Query: 259 --NDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKT 315
                 ++N +   I  ++   K  +NK   H  R+  AT + D G    ++    G + 
Sbjct: 246 LIEPYNRLNISGVEIRMRSLGKKLNINKVHPHKFRRTLATRAIDKGMPIEQVQQLLGHQK 305

Query: 316 VDQAETYTKGADRIRLGIKNSRRIS 340
           +D    Y    ++  + I + + I 
Sbjct: 306 IDTTLQYA-MVNQNNVKISHRKYIG 329


>gi|261420932|ref|YP_003254613.1| integrase [Geobacillus sp. Y412MC61]
 gi|319768580|ref|YP_004134080.1| integrase family protein [Geobacillus sp. Y412MC52]
 gi|261377390|gb|ACX80131.1| integrase family protein [Geobacillus sp. Y412MC61]
 gi|317113446|gb|ADU95937.1| integrase family protein [Geobacillus sp. Y412MC52]
          Length = 304

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 47/290 (16%), Positives = 88/290 (30%), Gaps = 39/290 (13%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH----T 129
           ++ EY         + N+ +S+ +  +Q ++         +T+  IR  ++   H     
Sbjct: 1   MLREYEDYLRGKGYSPNTVLSYLNDVNQFLKDLNLRPDDYVTSADIRKWIQQMLHPDEGK 60

Query: 130 P---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP---WTKEDMQQFK 183
           P   S+  + L ++R  + WAV Q YV  NP   +   K   E        T+E+ +   
Sbjct: 61  PFAVSTINRRLNALRNFYGWAVEQGYVEQNPMNGIADLKTADEDQETIMWLTEEEFEDLL 120

Query: 184 SF------WSEG-------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
                    S G        + R      +Y+GLR  +     +  +   +  ++    G
Sbjct: 121 HRMRKMLAHSRGVDPEEKYRRDRAIVYLFVYAGLRVEELSNLKLTDIDLEMKRLRIVGKG 180

Query: 231 TII-TVE----LPDGFMKLLAMTP---------IGKETFFINNDKQKMNATQFSIWFKAK 276
             + TV     L       LA                  F +    K +        +  
Sbjct: 181 MKVRTVPISNILLAELQDWLAFRAEMSKKKPHVAASPYVFYSQRSPKFSVRGIQRMVEGY 240

Query: 277 ATKAGVNKSAHGVRKFSATISADA-GATAHELMATYGWKTVDQAETYTKG 325
           +   G   + H  R         A      ++    G   +     Y K 
Sbjct: 241 SLP-GKKLTPHMFRHTFCKWMLKATNNDIEKVRRLAGHSHIATTSRYLKD 289


>gi|225376750|ref|ZP_03753971.1| hypothetical protein ROSEINA2194_02392 [Roseburia inulinivorans DSM
           16841]
 gi|225211376|gb|EEG93730.1| hypothetical protein ROSEINA2194_02392 [Roseburia inulinivorans DSM
           16841]
          Length = 323

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 37/280 (13%), Positives = 93/280 (33%), Gaps = 15/280 (5%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---- 128
             +  +  + H    +  +   +    ++++    +    KITT+ +R  +   +     
Sbjct: 47  DFLDMFLTTKHLERCSDKTIRYYRCNIEKMLDTI-NIPVIKITTEMLRKYLVEYQTINNC 105

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
              +      S+   F W   ++Y+  +P   + + K           E ++  +   + 
Sbjct: 106 GKVTIDNIRRSLSTFFSWLEEEDYIIKSPMKRIHKVKTAVIVKDTIPDEKIEILRDNCN- 164

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG-----FMK 243
             + R   +FLL +G+R  +  R  +  +  +         G        D       + 
Sbjct: 165 NLRDRAMIDFLLSTGIRVGELVRLNIDDIDFSERECVVYGKGDKERKAYFDAKTKIHLLN 224

Query: 244 LLAMTPIGKETFF--INNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADA 300
            +          F  +N    ++  +   +  +    K GV K   H  R+   T + + 
Sbjct: 225 YIESRTDNNIALFVSLNKPHSRLTESGVELRLREMGKKLGVEKVHPHKFRRTMDTRAIEK 284

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
           G    ++    G + +D    Y    ++  + + + + IS
Sbjct: 285 GMLIEQVQKILGHEQIDTTLRYA-MVNQNNVKLSHRKYIS 323


>gi|254440821|ref|ZP_05054314.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
 gi|198250899|gb|EDY75214.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
          Length = 319

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 41/244 (16%), Positives = 77/244 (31%), Gaps = 20/244 (8%)

Query: 107 GDFDYRKITTKHIRSGVESRKHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVER 163
           G     +IT   +R+ + S +    +A    + L++++  ++W   +E       LS   
Sbjct: 51  GLGPISRITVSDMRAWMASERSRGVAARSLARSLSAVKSFYRWLADREGFEPTAVLSTRS 110

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWS-------EGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216
           PK + +  RP   +  +                ++       L   GLR S++       
Sbjct: 111 PKFQKKLPRPLAVDAARAMIDTVQLQAGEPWIAARDMAVVTLLYGCGLRISEALGLIPAD 170

Query: 217 LQNNIFSIKTQKTGTIITVELPDGFM----KLLAMTP---IGKETFFINNDKQKMNATQF 269
           +          K G    V +           L   P      +  F  +    +     
Sbjct: 171 VPLPATLRIIGKGGKERLVPVIPAARTAVNAYLEACPHPMDADQPIFRGSRGGPLYPRAI 230

Query: 270 SIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
            I       + G+  +A  H +R   AT   +AG     +    G  ++   + YT   D
Sbjct: 231 QIVMANARMQLGLPATATPHAMRHSFATHLLNAGGDLRSIQELLGHASLSTTQAYT-AVD 289

Query: 328 RIRL 331
             RL
Sbjct: 290 TARL 293


>gi|160886776|ref|ZP_02067779.1| hypothetical protein BACOVA_04789 [Bacteroides ovatus ATCC 8483]
 gi|298383599|ref|ZP_06993160.1| tyrosine type site-specific recombinase [Bacteroides sp. 1_1_14]
 gi|156107187|gb|EDO08932.1| hypothetical protein BACOVA_04789 [Bacteroides ovatus ATCC 8483]
 gi|298263203|gb|EFI06066.1| tyrosine type site-specific recombinase [Bacteroides sp. 1_1_14]
          Length = 381

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 44/210 (20%), Positives = 81/210 (38%), Gaps = 19/210 (9%)

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVER--PKRKTEGIRPW-TKEDMQQFKSF---WSE 188
            +  ++      AVR++ +  NP   +E+    RK E +R + T E++Q          E
Sbjct: 165 NYYRALNGALNSAVRKKKMKANPFNELEKSEKIRKPESMRSYMTIEEVQALIDTPMPHEE 224

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT----QKTGTIITVELPDGFMKL 244
               + A+ F  + GLR SD  +   + +  +    +     +KT   I + L    +K 
Sbjct: 225 YEIVKCAYLFSCFCGLRISDIIKLKWKDVFVDRGQYRLAVSMKKTKEPIYLPLSPEALKW 284

Query: 245 L--AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
           +        ++  F        +A    +  K  A  AG++K  S H  R   AT+    
Sbjct: 285 MPERGGKSSEDNVFDL-----PSANTIRMQLKPWAKAAGISKRFSYHTSRHTFATMMLTL 339

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIR 330
           GA  + +    G   V   + Y K  ++ +
Sbjct: 340 GADLYTVSKLLGHADVKMTQVYAKIINKKK 369


>gi|84683488|ref|ZP_01011391.1| tyrosine recombinase XerC [Maritimibacter alkaliphilus HTCC2654]
 gi|84668231|gb|EAQ14698.1| tyrosine recombinase XerC [Rhodobacterales bacterium HTCC2654]
          Length = 313

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 45/246 (18%), Positives = 89/246 (36%), Gaps = 22/246 (8%)

Query: 106 SGDFDYRKITTKHIRSGVESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162
            G      +T   +R+ + S +    +  S  + L++++  ++W   ++    +  LS  
Sbjct: 55  HGRTALASVTISDMRAWMASERAGGLSARSLARALSAVKGFYRWLSDRDGFDASTVLSTR 114

Query: 163 RPKRKTEGIRPWTKEDMQQFKSFWSE-------GSQPRLAFEFLLYSGLRCSDSCRA-GV 214
            PK   +  RP ++E  ++  S  +        G++       L   GLR S++    G 
Sbjct: 115 APKFTAKLPRPVSQEAAEEVISTTAIQARDGWIGARDAAVVTLLYGCGLRISEALGLTGR 174

Query: 215 QHLQNNIFSIKTQKTGTIITVELPDGFMKL------LAMTPIGKET-FFINNDKQKMNAT 267
            H   ++  I   K G    V +             L   P+  +T  F     + +   
Sbjct: 175 AHPLPDVLRI-VGKGGKERLVPVLPAARDAVASYVRLCPYPVTDDTPLFYGARGKALGPR 233

Query: 268 QFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
                 ++   + G+  +A  H +R   AT   +AG     +    G  ++   + YT  
Sbjct: 234 TVQKAMESARLQLGLPATATPHAMRHSFATHLLNAGGDLRAIQELLGHASLSTTQAYT-A 292

Query: 326 ADRIRL 331
            D  RL
Sbjct: 293 VDTQRL 298


>gi|187934545|ref|YP_001886950.1| phage integrase [Clostridium botulinum B str. Eklund 17B]
 gi|187722698|gb|ACD23919.1| phage integrase [Clostridium botulinum B str. Eklund 17B]
          Length = 335

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 41/258 (15%), Positives = 92/258 (35%), Gaps = 13/258 (5%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR--SGVESRKHTPSSAIQ 135
           Y        L+  +  +++ + +++  +        I+T  +R    +  +    S+   
Sbjct: 65  YLACKKLEGLSSKTLYNYKLFLNKL-DQYFTKPCSTISTMDLRMFLALLGKGKKASTVNG 123

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195
           ++T ++  F W   +EY+  NP   +++ K     +  +  E++++ +    E  + +  
Sbjct: 124 YITYLKNFFGWLQNEEYIIKNPAFKLKQAKVPKVILEGYKAENLEKLREAC-ETKREKAL 182

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-----ELPDGFMKLLAMTPI 250
           FE L  +  R S+     +Q +  N  SIK    G+   +              L     
Sbjct: 183 FELLDSTACRISEIQNIKLQDINWNEKSIKVTGKGSKERIVYFSTRAKLALENYLKSRND 242

Query: 251 GKETFFINN--DKQKMNATQFSIWFKAKATKAGVNKSAHG--VRKFSATISADAGATAHE 306
              + FI+     + +         K    ++GV +  H    R+  AT   + G     
Sbjct: 243 DNNSLFISKKFHNRTLGVRSLQKTIKKIKERSGVTERVHTHKFRRTQATRLLNQGMRIEG 302

Query: 307 LMATYGWKTVDQAETYTK 324
           +    G  T    + Y +
Sbjct: 303 VQGILGHTTPTTTQIYAQ 320


>gi|327439442|dbj|BAK15807.1| integrase [Solibacillus silvestris StLB046]
          Length = 363

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 56/342 (16%), Positives = 112/342 (32%), Gaps = 39/342 (11%)

Query: 11  VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
           V K++ R     Y+  + +G++++        F     + L  +  + E      ++  +
Sbjct: 3   VYKDKER--NTYYFITRINGKQVKRRG-----FKTKKEALLAEAQLENEGNV---EQIIS 52

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---K 127
            +++  EY K         + +         +           I  + I    +     K
Sbjct: 53  FEFIADEYMKWYKTRRKESSFKKLRSVITVHLKPYFKKKALHTIRQRDIIKFHDHLIETK 112

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI-RPWTKEDMQQFKSFW 186
            + ++A +    +  LF +A++ EY   NP   V   + K       WT ++ + F    
Sbjct: 113 LSAATAKKIHQILSALFNFAIKNEYTKDNPARVVGNIEMKENKHMNYWTLDEFKAFIKQV 172

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIF---------SIKTQKT-GTIIT 234
                    F  L YSG+R  +        +   NN            I T KT  +   
Sbjct: 173 D-NIVYHTLFMTLYYSGMRTGELVALTWSDIDFTNNTINVNKTLAGTKITTTKTESSTRI 231

Query: 235 VELPDGFMKLLAMTPIG---------KETFFIN-NDKQKMNATQFSIWFKAKATKAGVNK 284
           + +P+  M LL    +          K  + +     + M+ T     ++     + V +
Sbjct: 232 ITMPNHIMHLLGKLKLHQASKYGFEPKMNYCVFGKFTRYMSKTALDNNYRKYIELSDVKR 291

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
              H  R   A+   + G     + A  G   V    +TY+ 
Sbjct: 292 IRLHDFRHSHASYLINKGVIISVVAARLGHANVSMTLDTYSH 333


>gi|323669665|emb|CBJ94787.1| shufflon-specific DNA recombinase [Salmonella bongori]
          Length = 383

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 42/279 (15%), Positives = 91/279 (32%), Gaps = 23/279 (8%)

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121
              R K  +L   + +Y  +          +  F            +    +ITT  I S
Sbjct: 3   RPQRIKKMSLSKALDKYYATVSVHKRGH--QQEFYRVRVIQRHPLAEKMMDEITTVDIAS 60

Query: 122 GVESRKHTPSSAIQF----------LTSMRVLFKWA-VRQEYVAINPCLSVERPKRKTEG 170
             + R    ++              L  +  L+  A V       NP   V +PK     
Sbjct: 61  YRDDRLSQVNTRTGRCISGNTVRLELALLSSLYNLASVEWGTCRTNPVEMVRKPKISGGR 120

Query: 171 IRPWTKEDMQQFKSFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQ 227
            R  T ++ ++   ++ E +      F   + + +R  +      +H+     +  +   
Sbjct: 121 DRRLTSQEERRLSRYFQEQNPALHAIFHLAIETAMRQGEILSLRWEHIDLQHGVAHLPMT 180

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSA 286
           K G+   V L      LL        T  ++ +    +++ F   ++    +  + +   
Sbjct: 181 KNGSSRDVPLSRKARHLL-----QGMTVALSGNVFHYSSSGFKSAWRVALQRLNIADLHF 235

Query: 287 HGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTK 324
           H +R  + +   + G     E+ A  G ++++    YT 
Sbjct: 236 HDLRHEAISRLFELGTLNVMEVAAISGHRSLNMLRRYTH 274


>gi|148272560|ref|YP_001222121.1| integrase/recombinase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147830490|emb|CAN01425.1| integrase/recombinase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 298

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 37/280 (13%), Positives = 86/280 (30%), Gaps = 32/280 (11%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR------K 127
           I+ +  S       A ++  ++ +    +   +G           +    +        +
Sbjct: 4   IAAFGTSMDRERGSAAHTVRAYSADLRDLAAHAGRQGVTTSAALDLEVLRDWLWRGSQAR 63

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186
             P++  +   ++R    W +R   V  +P + ++ P+  +   R   +E M    +   
Sbjct: 64  LAPATLARRSAAVRGFGAWLLRTGRVEADPAVRLKAPRAGSHLPRVLAREQMSALLARLA 123

Query: 187 -------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---- 235
                      +     E L  S LR S+     +  +  +  +++    G    V    
Sbjct: 124 ARAAEDDPAALRDLAVIELLYASALRVSELTGLELGDVDASRLTVRVVGKGDRERVVPFG 183

Query: 236 -ELPDGFMKLLAM------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--- 285
               +     +A       +P      F+     ++ +          +  A +  S   
Sbjct: 184 VPAAEALDAYVARGRPGLVSPRTGTALFLGARGGRLGSRAVYGLV--ASLLADIPGSGPQ 241

Query: 286 -AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             H +R  +AT   D GA    +    G  ++   + YT 
Sbjct: 242 GPHALRHTAATHLLDGGADLRTVQEMLGHASLGTTQIYTH 281


>gi|114567775|ref|YP_754929.1| phage integrase [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
 gi|114338710|gb|ABI69558.1| phage integrase [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
          Length = 392

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 54/344 (15%), Positives = 109/344 (31%), Gaps = 49/344 (14%)

Query: 26  RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK-PTTLKWLISEYRKSAHW 84
           R G  R+ +  +         Y+  + G      Y +         L   I+ Y      
Sbjct: 24  RTGERRQHKKRFTGTKREANKYLQRILGEIESGSYSDLGNITIKQYLDKWINAYCTP--- 80

Query: 85  GSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHT---------PSSAI 134
            +L   +  S+ S  +  II   G      +   HI         +         P++ +
Sbjct: 81  TNLQPKTIRSYTSTINNHIIPHLGRHKLNNLKAAHIADYYALMSKSRTEGGAGLSPTTVL 140

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
                +    K AV Q+Y+  NP   V+ P++    I+  + E  +   + +SE  Q  L
Sbjct: 141 YHHRILHQALKHAVNQDYLKQNPVAKVQPPRKNRPDIKVLSVEQARYLIARYSE-EQIYL 199

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQ---------------NNIFSIKTQKT-GTIITVELP 238
                L +G+R ++      Q++                 N   +K  KT  +  ++ +P
Sbjct: 200 PVFLALMTGMREAEIAALRWQNVDFDNRTLSVTNALQRQENRLELKEPKTKKSRRSIPVP 259

Query: 239 DGFMKLLAMTPIGKETF--------------FINNDKQKMNATQFSI-WFKAKATKAGVN 283
           +  + +L      ++ +                  D +  +       W K  A+   + 
Sbjct: 260 EQVVVVLKKEKERQDCYREILGEGYDCRGFVCAWEDGKPYDPEWIGKQWAKLVASDDKIP 319

Query: 284 --KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
                H +R   ATI          +    G +++    + Y+ 
Sbjct: 320 NGVRFHDLRHTHATILLSQNINLKVIQDRLGHESIATTGDIYSH 363


>gi|19704172|ref|NP_603734.1| integrase/recombinase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
 gi|19714390|gb|AAL95033.1| Integrase/recombinase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
          Length = 328

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 42/295 (14%), Positives = 96/295 (32%), Gaps = 44/295 (14%)

Query: 88  AVNSRISFESYFDQIIR--KSGDFDY---------RKITTKHIRSGV----ESRKHTPSS 132
           +  +   +  +    +     G+ D+         + I  + + + +    E RK   +S
Sbjct: 33  SEKTVKDYMFHLKDFLHFVYDGENDFSISEVIPLMQDIEKEDVEAYIVHLFEDRKLKKTS 92

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW--TKEDMQQFKSFWSEGS 190
               L++++ L+K          NP   ++  K           + +D+++    +   S
Sbjct: 93  VNTILSALKSLYKELESNGL--KNPVKYIKLFKVNRNIENILKVSIDDIRKIIGLYKIDS 150

Query: 191 QPR----LAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDGFM 242
           + +         L Y+G+R  +      +H         F +   K+G  +   +    +
Sbjct: 151 EKKYRNITILYTLFYTGMRSKELLTLQFKHYLKREDEYFFKLVQTKSGKDVYKPIHKSLV 210

Query: 243 K-------------LLAMTPIGKETFFINN--DKQKMNATQFSIWFKAKATKAGVNKSAH 287
           K              L +  + ++  F  +  D   ++    +   +      G + S H
Sbjct: 211 KKLEEYKEYLMSMYSLDLKDLDEKYIFSTSILDNSPLSYRSLNAIIQDMGKLIGKDISPH 270

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
            +R   AT  + +GA   E+    G       E Y     R  L  K   ++  +
Sbjct: 271 NIRHAIATELSLSGADILEIRDFLGHSDTKVTEVYINA--RSILEKKVLEKLPEI 323


>gi|326344401|gb|EGD68154.1| Shufflon-specific DNA recombinase [Escherichia coli O157:H7 str.
           1125]
          Length = 374

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 46/274 (16%), Positives = 98/274 (35%), Gaps = 19/274 (6%)

Query: 65  RKKPTTLKWLISEYRKSAHWGS---LAVNSRIS---FESYFDQIIRKSGDFDYRKITTKH 118
           + +  T+   + +Y K+        L    R++        ++ +      D      + 
Sbjct: 6   KIRKMTISRALDKYLKTVSIHKKGHLQEFYRVNVIKRHPIAERYMDDITTVDIANYRDQR 65

Query: 119 IRSG--VESRKHTPSSAIQFLTSMRVLFKWA-VRQEYVAINPCLSVERPKRKTEGIRPWT 175
           +        R+ T ++    L  +  LF  A V      +NP   V +PK  +   R  T
Sbjct: 66  LAQINPRTGRQITGNTVRLELALLSSLFNIARVEWGTCRMNPVELVRKPKISSGRDRRLT 125

Query: 176 KEDMQQFKSFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTGTI 232
             + ++   ++ E +Q   + F   L + +R  +      +H+     +  + T K G  
Sbjct: 126 SGEERRLSRYFKEKNQALYVIFHLALETAMRQGEILSLRWEHVDLQHGVAHLPTTKNGAP 185

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRK 291
             V L       L M PI      +N +     ++ F   ++    +  + N   H +R 
Sbjct: 186 RDVPLSRKARSYLQMLPIQ-----LNGNIFSYTSSGFKSAWRTALQELKIENLHFHDLRH 240

Query: 292 FSATISADAG-ATAHELMATYGWKTVDQAETYTK 324
            + +   + G     E+ A  G ++++  + YT 
Sbjct: 241 EAISRFFELGTLNVIEVAAISGHRSLNMLKRYTH 274


>gi|255975601|ref|ZP_05426187.1| phage integrase [Enterococcus faecalis T2]
 gi|307277808|ref|ZP_07558892.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0860]
 gi|255968473|gb|EET99095.1| phage integrase [Enterococcus faecalis T2]
 gi|306505205|gb|EFM74391.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0860]
          Length = 392

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 63/392 (16%), Positives = 125/392 (31%), Gaps = 72/392 (18%)

Query: 1   MTPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60
           M    R    +T      GKI +YF+    R  R  +  +     AY+        K++ 
Sbjct: 1   MENMSRFKKHITAT----GKITWYFQ--DFRTTRRGFNSKREAQLAYLEMEKQHRNKQKR 54

Query: 61  INS-PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119
           + S  +    + KW   EY +S +     V +    E     + R  G      ++++ +
Sbjct: 55  LASNDKFSVVSQKWF--EYYRSLN--EQKVATYDKREEQVKILNRWIGGKKLSSLSSEEL 110

Query: 120 RSGVESRKHT----------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK-- 167
           +  +   K             +S    +  + ++F +  ++  +  NP   V+ PK +  
Sbjct: 111 QKFLFILKEKGIDGVNVGYAKNSLQSLVQVLNMVFNYCKKKNLINENPMKFVKMPKYQLS 170

Query: 168 ---------TEGIRPWTKEDMQQFKSF--WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216
                    +   +  T ++++ F ++    E     + F  L Y+G R S++     Q 
Sbjct: 171 LKDLKESVNSLEDKFLTVDELRAFLNYGIVYEELPMSVLFHVLFYTGCRVSEALALQPQD 230

Query: 217 LQNNI-----------------FSIKTQKT-GTIITVELPD-------GFMKLLAMTPIG 251
           +                     F I+T KT  +   V +           + +L  T   
Sbjct: 231 IDFERNEILFYKQTAVKGKSKDFRIETTKTVSSARRVPVTPLVMEKLQELIDVLNKTKRN 290

Query: 252 -----KETFFI-----NNDKQKMNATQFSIWFKAKATKAGVNKSAHG--VRKFSATISAD 299
                 ET+                   +   K    + G+NK  H    R   A++ A+
Sbjct: 291 SNFVVDETYLFVYLDPGKRGVPYRREYVNDHVKRCVERCGINKDFHTHLARHTMASLVAE 350

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRL 331
              +   L    G      ++ Y       +L
Sbjct: 351 Y-CSWDVLKDRLGHTDSTTSKIYRHLTSTEKL 381


>gi|224282694|ref|ZP_03646016.1| site-specific tyrosine recombinase XerC [Bifidobacterium bifidum
           NCIMB 41171]
          Length = 334

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 51/300 (17%), Positives = 100/300 (33%), Gaps = 60/300 (20%)

Query: 85  GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGV--ESRKHTPSSAIQFLTS 139
             L+ N+  ++ +   + +      G  D R++TT  +R  +  E+R H  SS  + + S
Sbjct: 18  RGLSGNTVKAYGTDVRECLHALASRGIADLRQVTTDDLRGWMAFETRDHARSSMARKVVS 77

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ------------------ 181
           +R  F WA     +  +P   +  PK         T+   ++                  
Sbjct: 78  VRSFFAWAHEHGRIEADPAAVLMTPKLPDTLPSVLTEAQAERLMDRVDDDASLHAASSQR 137

Query: 182 FKSFWSE--------------------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221
           +++   E                      +     E L  +G+R ++     +  +  + 
Sbjct: 138 YETRHDEMPRLDSAHRGEGMSQRDEVVALRDAAMLELLYATGIRVAELVGLDIGDVDWSH 197

Query: 222 FSIK-TQKTGTIITVELPDGFMKLLA---------------MTPIGKETFFINNDKQKMN 265
            +I+ T K      V   D   K LA                  +     F+    ++++
Sbjct: 198 RTIRVTGKGSKQRVVPFGDPAEKALAGWKEHGRPLILRRAGAGTLDTAALFLGMRGRRID 257

Query: 266 ATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
                      A ++GV + S H +R  +AT   D GA   E+    G  ++   + YT 
Sbjct: 258 QRIVRDVVHRAARESGVPDISPHSLRHSAATHMLDGGADLREVQEMLGHSSLRTTQRYTH 317


>gi|254360492|ref|ZP_04976641.1| possible integrase/recombinase [Mannheimia haemolytica PHL213]
 gi|153091032|gb|EDN73037.1| possible integrase/recombinase [Mannheimia haemolytica PHL213]
          Length = 346

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 50/252 (19%), Positives = 83/252 (32%), Gaps = 18/252 (7%)

Query: 88  AVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFK 145
           A N+R S       + +  G+      KI  KHI   ++ RK TP+ A   +     ++ 
Sbjct: 88  AKNTRQSNLQAIHWLCKFFGNPPAPLEKIEPKHISQYLQWRKDTPAVANIEVGLFNTIWN 147

Query: 146 WAVRQEYVA-INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGL 204
            A    Y A  +P   V++   K   +       + +   F  E        E     G 
Sbjct: 148 MAREWGYTALPSPSQGVKKFPTKYREVYV-EDYILDKIYEFADERMAD--IIETAYLLGQ 204

Query: 205 RCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA-MTPIGKETFFINNDKQK 263
           R  D C     H+ + I  I  QKTG  +  E+     ++L        +  F N   +K
Sbjct: 205 RPIDICNIHRSHIYDGILHITQQKTGKKVRFEISGRLKEILDKRLGYESDWIFTNKWGKK 264

Query: 264 MNATQFSIWFKAKATKA---------GVNK-SAHGVRKFSATISADAGATAHELMATYGW 313
           +        FK    +A          + K     +R  +AT  +    T  +     G 
Sbjct: 265 LKRRSLGDHFKEIRERAMKAYPELADEIAKVQMRDMRAKAATDISLM-TTDEQAQKQLGH 323

Query: 314 KTVDQAETYTKG 325
            +      Y + 
Sbjct: 324 TSKRMTHHYIRK 335


>gi|291563477|emb|CBL42293.1| Site-specific recombinase XerD [butyrate-producing bacterium SS3/4]
          Length = 350

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 42/285 (14%), Positives = 90/285 (31%), Gaps = 40/285 (14%)

Query: 97  SYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA-----------IQFLTSMRVLFK 145
             FD         D  K+T   +   ++  K  PS             ++ ++S+R  + 
Sbjct: 65  RTFDNPAHTLTPGDLEKLTVSDLEEYIDYLKCHPSDTCEDVVNTERGLMRKVSSLRSFYS 124

Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS--------------- 190
           +  R E +  NP   V  PK   + I     +++ +      EG                
Sbjct: 125 YFFRNELIEKNPAALVRMPKLHEKEIIRLEIDEVAKLLDEVEEGDKLTEKQKLYHERTKV 184

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF-------- 241
           +       LL +G+R S+     +  +  +    +  +K G    +   D          
Sbjct: 185 RDLAMMSLLLGTGIRVSECVGLNINDIDLDTCGARVYRKGGKESVIYFSDEVRDVLEDYL 244

Query: 242 --MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS 297
              +++   P  ++  F++  ++++N        K  A         + H +R    T  
Sbjct: 245 DEREMIDAVPGNEDALFLSMQRKRINVRSVENLVKKYAKLVTPLKKITPHKLRSTYGTSL 304

Query: 298 ADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISS 341
                  + + +  G   V+   + Y    +  R   +N  R+  
Sbjct: 305 YRETGDIYLVASVLGHNDVNTTRKHYAAQEEERRRSARNVVRLRE 349


>gi|218884315|ref|YP_002428697.1| phage integrase family protein [Desulfurococcus kamchatkensis
           1221n]
 gi|218765931|gb|ACL11330.1| phage integrase family protein [Desulfurococcus kamchatkensis
           1221n]
          Length = 321

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 42/277 (15%), Positives = 97/277 (35%), Gaps = 22/277 (7%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR------K 127
           ++ E++ S      +  +  ++ S     +   GD   R +T + I +    R       
Sbjct: 9   IVEEFKASLEASGASEETVKAYLSAIKDFLGFIGDKPLRDVTLRDILAWRNDRLRNGFPN 68

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
              S   ++L ++     +  R  E++ +N    V   ++    I   + E++++  +  
Sbjct: 69  RKISDKEKWLVTLHYYTLFLKRFFEWLGVNIV--VTPVRKPHASINVLSDEEVEKLYNVA 126

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKL 244
                 +L    L+ +GLR  +     V+ +   + +  + + K G    V   +   K+
Sbjct: 127 RTPL-DKLVLRLLVDTGLRSRELLGLRVEDVNFHSRVIKVTSAKYGKERYVVATEETFKM 185

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG 301
           L             +    +  +      K  AT+AG+       H +R   AT +   G
Sbjct: 186 LDAWIRLNG-LMPGDRLFNLTYSGLYKKLKRLATRAGIAPERVRPHVLRHTFATRALRRG 244

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338
            +   L    G   +   + Y        L +++ ++
Sbjct: 245 LSLPALQRLLGHSDIKTTQIYLH------LSVEDLKK 275


>gi|148912793|ref|YP_001293372.1| Integrase [Pseudomonas phage F10]
          Length = 349

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 54/318 (16%), Positives = 100/318 (31%), Gaps = 43/318 (13%)

Query: 7   LPPFVTKERTR---HGKII--YYF--RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKRE 59
           LPP + K RTR    GK+   YY+  R   GRR  +P   +        +        + 
Sbjct: 11  LPPRMIK-RTRTMKSGKVWVGYYYDGRDAEGRRKEIPLGTDLDEAREKWA--------KL 61

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119
              +      T+  L+  + +     + A  ++  +     Q++    +     IT   I
Sbjct: 62  ERKAVPPTTRTVGDLLRRFERDV-VPTKAPKTQKEYSKMIRQLLGAFDEAPVEDITPSTI 120

Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA-INPCLSVERPKRKTEGIRPWTKED 178
               ++R      A + +T +   +  A      +  NPC  V++ K +   +   T E 
Sbjct: 121 AQYRDARTAKVR-ANREITLLSFAYNMAREWGITSMENPCRGVKKNKEQPRDVYV-TDEV 178

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
            +       +    R+  +    +G R +D  +     +  +   +   KT   + + L 
Sbjct: 179 WKALYEKAPDDL--RVTMDLAYLTGQRPADVRKLRKSDVSGDYLLVGQNKTSRKLRIRLR 236

Query: 239 DG------FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKF 292
                      L+            N   Q M        F                RK 
Sbjct: 237 RADGQMTQLGHLVESIASDSPALVTNEKGQPMTEKMLRTRFD-------------TARKA 283

Query: 293 SATISADAG--ATAHELM 308
           +A  +  AG    A E+M
Sbjct: 284 AADEAIKAGDQDLAREIM 301


>gi|15856|emb|CAA49810.1| integrase [Mycobacterium phage D29]
 gi|2358241|gb|AAB69102.1| integrase [Mycobacterium phage D29]
          Length = 333

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 51/299 (17%), Positives = 101/299 (33%), Gaps = 40/299 (13%)

Query: 53  GSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDY 111
               K+   ++   +  T KW+            LA  ++  + ++   +I    GD   
Sbjct: 23  AEREKKAAASAITVEEYTKKWIAER--------DLAGGTKDLYSTHARKRIYPVLGDTPV 74

Query: 112 RKITTKHIRSGVESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170
            ++T   +R+      K  P++       +R +   AV  + V+ NPC  +E+       
Sbjct: 75  AEMTPALVRAWWAGMGKQYPTARRHAYNVLRAVMNTAVEDKLVSENPCR-IEQKAPAERD 133

Query: 171 IRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQK 228
           +   T E++             R+A   L ++ LR  +      + +        ++ ++
Sbjct: 134 VEALTPEELDVVAG--EVFEHYRVAVYILAWTSLRFGELIEIRRKDIVDDGETMKLRVRR 191

Query: 229 TGTII----------------TVELPDGFMKLLA--------MTPIGKETFFINNDKQKM 264
               +                 V +P     ++         M    +         Q++
Sbjct: 192 GAARVGEKIVVGNTKTVRSKRPVTVPPHVAAMIREHMADRTKMNKGPEALLVTTTRGQRL 251

Query: 265 NATQFSIWFKA-KATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           + + F+   K   A     +   H +R   AT++A AGAT  ELM   G  T   A  Y
Sbjct: 252 SKSAFTRSLKKGYAKIGRPDLRIHDLRAVGATLAAQAGATTKELMVRLGHTTPRMAMKY 310


>gi|30263996|ref|NP_846373.1| prophage LambdaBa02, site-specific recombinase phage integrase
           family protein protein [Bacillus anthracis str. Ames]
 gi|47778252|ref|YP_020778.2| prophage lambdaba02, site-specific recombinase phage integrase
           family protein protein [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49186834|ref|YP_030086.1| prophage LambdaBa02, site-specific recombinase phage integrase
           family protein protein [Bacillus anthracis str. Sterne]
 gi|65321318|ref|ZP_00394277.1| COG0582: Integrase [Bacillus anthracis str. A2012]
 gi|165872111|ref|ZP_02216750.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0488]
 gi|167633704|ref|ZP_02392028.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0442]
 gi|167641018|ref|ZP_02399275.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0193]
 gi|170688722|ref|ZP_02879926.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0465]
 gi|170705756|ref|ZP_02896219.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0389]
 gi|190565741|ref|ZP_03018660.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis Tsiankovskii-I]
 gi|227816697|ref|YP_002816706.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. CDC 684]
 gi|229604530|ref|YP_002868225.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0248]
 gi|254683690|ref|ZP_05147550.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family protein [Bacillus anthracis str. CNEVA-9066]
 gi|254721526|ref|ZP_05183315.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family protein [Bacillus anthracis str. A1055]
 gi|254736035|ref|ZP_05193741.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family protein [Bacillus anthracis str. Western North
           America USA6153]
 gi|254743926|ref|ZP_05201609.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family protein [Bacillus anthracis str. Kruger B]
 gi|254754295|ref|ZP_05206330.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family protein [Bacillus anthracis str. Vollum]
 gi|254758014|ref|ZP_05210041.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family protein [Bacillus anthracis str. Australia 94]
 gi|30258640|gb|AAP27859.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. Ames]
 gi|47551957|gb|AAT33253.2| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. 'Ames Ancestor']
 gi|49180761|gb|AAT56137.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. Sterne]
 gi|164712058|gb|EDR17596.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0488]
 gi|167511068|gb|EDR86457.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0193]
 gi|167531110|gb|EDR93797.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0442]
 gi|170129296|gb|EDS98160.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0389]
 gi|170667238|gb|EDT17997.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0465]
 gi|190562660|gb|EDV16626.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis Tsiankovskii-I]
 gi|227005467|gb|ACP15210.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. CDC 684]
 gi|229268938|gb|ACQ50575.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0248]
          Length = 376

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 44/293 (15%), Positives = 96/293 (32%), Gaps = 28/293 (9%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHT 129
              L+  + +     S   ++   ++     +++ + G+     I    + +  +     
Sbjct: 63  FSQLVEIWTQEKE-SSCRPSTLYQYKRILRSRVMPEFGEKRLSDIKPLSVHNFHQKLLKE 121

Query: 130 PSSAIQFLTS---MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             +     +    ++ +    V  E +  NP    +RPK K +    WT E+  +F  + 
Sbjct: 122 GLTTKYISSVDVMLKQILDKGVELEMINSNPAKKAKRPKVKKKAQASWTVEEAMKFMEYA 181

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT------------ 234
                  +AF   L++G+R  +      + +      I  Q+T T++             
Sbjct: 182 KIQGSYYIAFVLALHTGMRIGEVLALQWKDINFESKVIHVQRTLTLVDGKYELGETKTEA 241

Query: 235 ----VELPDGFMKLLAMTPIGK-----ETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284
               + +    M+ L      K     +      +K+ ++        KA      V   
Sbjct: 242 SNRMIPMTQELMRELLEYQSHKKDNSFDLLICTRNKKIVHPYTIRYQMKALCEAIDVPYI 301

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNS 336
             H +R+   TI  D+GA A  +    G   V      YT   +  ++ +   
Sbjct: 302 RFHDIRRTFTTILIDSGANAKVVSKLLGHTNVSTTLNIYTDVYEERQIEVTEM 354


>gi|218889533|ref|YP_002438397.1| Integrase [Pseudomonas aeruginosa LESB58]
 gi|218769756|emb|CAW25516.1| Integrase [Pseudomonas aeruginosa LESB58]
          Length = 349

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 54/318 (16%), Positives = 100/318 (31%), Gaps = 43/318 (13%)

Query: 7   LPPFVTKERTR---HGKII--YYF--RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKRE 59
           LPP + K RTR    GK+   YY+  R   GRR  +P   +        +        + 
Sbjct: 11  LPPRMIK-RTRTMKSGKVWVGYYYDGRDAEGRRKEIPLGTDLDEAREKWA--------KL 61

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119
              +      T+  L+  + +     + A  ++  +     Q++    +     IT   I
Sbjct: 62  ERKAVPPTTRTVGDLLRRFERDV-VPTKAPKTQKEYSKMIRQLLGAFDEAPVEDITPSTI 120

Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA-INPCLSVERPKRKTEGIRPWTKED 178
               ++R      A + +T +   +  A      +  NPC  V++ K +   +   T E 
Sbjct: 121 AQYRDARTAKVR-ANREITLLSFAYNMAREWGITSMENPCRGVKKNKEQPRDVYV-TDEV 178

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
            +       +    R+  +    +G R +D  +     +  +   +   KT   + + L 
Sbjct: 179 WKALYEKAPDDL--RVTMDLAYLTGQRPADVRKLRKNDVSGDYLLVGQNKTSRKLRIRLR 236

Query: 239 DG------FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKF 292
                      L+            N   Q M        F                RK 
Sbjct: 237 RADGQMTQLGHLVESIASDSPALVTNEKGQPMTEKMLRTRFD-------------TARKA 283

Query: 293 SATISADAG--ATAHELM 308
           +A  +  AG    A E+M
Sbjct: 284 AADEAIKAGDQDLAREIM 301


>gi|116254396|ref|YP_770234.1| shufflon-specific DNA recombinase [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115259044|emb|CAK10154.1| putative shufflon-specific DNA recombinase [Rhizobium leguminosarum
           bv. viciae 3841]
          Length = 317

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 48/325 (14%), Positives = 109/325 (33%), Gaps = 35/325 (10%)

Query: 32  RIRLPYPHESTFIPAYMSALTGSTPKREYINSPR-KKPTTLKWLISEYRKSAHWGSLAVN 90
           + R            +   L     +       +  + TTL  L+  Y+       ++  
Sbjct: 2   KPRAKSFDSKAEAEKWARELESQVDRFGAAPDTKILETTTLGDLLKRYK-----IEVSP- 55

Query: 91  SRISFESYFDQI----IRKSGDFDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLF 144
           ++        +I      +        ++   + S  + R  +  PS+A++ +  +  + 
Sbjct: 56  TKRGCVQEIQRIDVLERHEIAHRTLVGLSQPDVASFRDERLSSVAPSTAVREMAILSHVI 115

Query: 145 KWAVRQEY---VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP--RLAFEFL 199
           + A+ +++   ++ N    V RP  + E  R    ++ Q+       G  P  R      
Sbjct: 116 EVAM-RDWGFPLSRNVVKLVRRPVIRNERKRRLEGDEEQRLLDGCDGGKIPFMRTLLIVA 174

Query: 200 LYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELP----DGFMKLLAMTPIGKE 253
           + +G+R S+        +     + +++  K G+   V +     D   +     P+ + 
Sbjct: 175 IETGMRRSEILGLKWTDISHNRRVITLEMTKNGSGREVPMTQRAFDALSRWKENAPVEES 234

Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYG 312
             F            F   ++    +A +     H +R    +   + G    E+ +  G
Sbjct: 235 MVFPIAPG------SFEQVWRRLLKRANIVGLRFHDLRHEGVSRLFERGLNVIEVSSISG 288

Query: 313 WKTVDQAETYTK-GAD--RIRLGIK 334
            K +   + YT   AD    RLG+ 
Sbjct: 289 HKELRMLKRYTHLSADDLVARLGMS 313


>gi|332042847|gb|EGI79046.1| integrase family protein [Lacinutrix algicola 5H-3-7-4]
          Length = 279

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 39/256 (15%), Positives = 85/256 (33%), Gaps = 17/256 (6%)

Query: 85  GSLAVNSRISFESYFDQIIRKSG-DFDYRKITTKHIRSGVESRKHTPSSA----IQFLTS 139
              + NS  ++        +  G   D   +  K + + +    H  + A     Q   +
Sbjct: 17  KRYSENSINTYLGLIKSFHKYVGFQIDLISLENKQLLAIIIQIVHDKNLAYTTHKQLCAA 76

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199
           +++ ++    ++ +  +P     RP   +      + ++++      +   + +     +
Sbjct: 77  LKLFYREMYSRD-IDFSPVYPTRRP---SPLPNIISTKEVKAISESHN-NIKHKAMLTAI 131

Query: 200 LYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKLLA---MTPIGKET 254
              GLR  +     ++ +    N   I++ K      + LP+    L     +    K  
Sbjct: 132 YALGLRSGELINIKIEDINSDRNQIFIRSGKGRKDRVLPLPNSLRVLFREYYLQYRPKNY 191

Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYG 312
            F   +  K         FK    KAG+NK  + H +R   AT   D G     +    G
Sbjct: 192 LFCGRNGDKYAPESLRKVFKMAVFKAGINKQITLHSLRHAYATHLMDRGTDVRIIKELLG 251

Query: 313 WKTVDQAETYTKGADR 328
             ++     YT    +
Sbjct: 252 HSSIKTTLIYTHVTQK 267


>gi|325956667|ref|YP_004292079.1| integrase-recombinase [Lactobacillus acidophilus 30SC]
 gi|325333232|gb|ADZ07140.1| integrase-recombinase [Lactobacillus acidophilus 30SC]
 gi|327183490|gb|AEA31937.1| integrase-recombinase [Lactobacillus amylovorus GRL 1118]
          Length = 302

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 40/275 (14%), Positives = 100/275 (36%), Gaps = 25/275 (9%)

Query: 75  ISEYRKSAHWGSL-AVNSRISFESYF----DQIIRKSGDFDYRKITTKHIRSGVE---SR 126
           + ++     +    +  +  S+ +             G   ++K+T + I+  ++    R
Sbjct: 8   LDQFISYLQFERYYSKKTISSYATDLHEAKKFWQENGGFAGWKKVTERDIQIYIQHLGDR 67

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
           K   SS  + ++S+   +++  R+  V I+P  +V   + + +  + + + +++Q     
Sbjct: 68  KLARSSQARQMSSLHSFYRFLTRRRIVKIDPTQTVVIRRGEKKLPQFFYQPEIKQVFDSL 127

Query: 187 ----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-ITVELPDGF 241
                   +    FE    +G+R S+     +  +  ++ +I     G     V   D  
Sbjct: 128 QGDKPLTVRNLALFELFYATGMRVSEVSGLTLPQIDLDLKTILVHGKGNKDRYVAFDDRT 187

Query: 242 MKLL-----AMTPI-----GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289
              L        P       ++  F++N  + ++        +    +AG++     H +
Sbjct: 188 KNSLLNYLNNARPRLLKDKDEQHVFLSNQGKAISDRGIQYVMQKTFNQAGISGKVHPHEL 247

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           R   AT   + GA    +    G  ++   + YT 
Sbjct: 248 RHTFATAMLNNGADMRSVQELLGHSSLSATQIYTH 282


>gi|302039282|ref|YP_003799604.1| putative phage integrase [Candidatus Nitrospira defluvii]
 gi|300607346|emb|CBK43679.1| putative Phage integrase (modular protein) [Candidatus Nitrospira
           defluvii]
          Length = 410

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 59/339 (17%), Positives = 112/339 (33%), Gaps = 40/339 (11%)

Query: 22  IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKS 81
           +YY  KG   R  L Y            A+  +  + E     R   +TL+  +  Y   
Sbjct: 18  LYYRWKGQRYRPLLGYDLSPDEAEELAIAMISTIHRGEQAPPSRSPESTLRTFLPIY--- 74

Query: 82  AHWGSLAVNSRISFES---YFD-QIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAI 134
             W +L V +R+         +  ++ + GD     +T +  +  + +R   K +P +  
Sbjct: 75  --WQALRVKNRVDLRRPEIILETHLLPRFGDRLLDSLTPEDGQEYIAARLDAKASPGTIQ 132

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
           +    +  +   AV  E +  N    V+ P+      R  T E++   ++  ++    ++
Sbjct: 133 KEWGVLMRILNLAVDFEKLDRNRLKRVQLPEVARRE-RVATNEELSAIQAEAAKRKPYKI 191

Query: 195 ------------AFEFLLYSGLRCSDSCRAGVQHL---QNNIFSI----KTQKTGTIITV 235
                         +  L++GLR +         L    +  + I    +T+  GT   +
Sbjct: 192 LGRVYDPAEFWRIVQVALHTGLREAKILEIDRSWLRQRDDGWWLILPPSRTRLKGTPREL 251

Query: 236 EL-PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFS 293
            L    +  L       +   F N      +A  F   +      A V +   H +R   
Sbjct: 252 PLNHLVYRALRPEVAAIEGPIFAN-----WSADAFGHQWHRTCKAAKVQDLHFHDLRHTF 306

Query: 294 ATISADAGATAHELMATYGWKTVD-QAETYTKGADRIRL 331
            T   + G +     A  G  T       Y+ G     L
Sbjct: 307 TTRLQNLGVSLEIRSALLGHSTKAIMTSQYSHGGQGWNL 345


>gi|296451879|ref|ZP_06893596.1| conserved hypothetical protein [Clostridium difficile NAP08]
 gi|296879726|ref|ZP_06903701.1| conserved hypothetical protein [Clostridium difficile NAP07]
 gi|296259261|gb|EFH06139.1| conserved hypothetical protein [Clostridium difficile NAP08]
 gi|296429315|gb|EFH15187.1| conserved hypothetical protein [Clostridium difficile NAP07]
          Length = 424

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 47/307 (15%), Positives = 93/307 (30%), Gaps = 53/307 (17%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSG---VES 125
           TL     ++ +   +  +A ++R+ +ES +   I    G    + I    IR     ++ 
Sbjct: 67  TLDEWYQKWLEIYKYKVIAPSTRVQYESIYKKHIQTDFGHMKLKDIQPLQIRGKLVNLDK 126

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +     +  +    +  +F  AV       NP  +++  + + +  R  + E+   F   
Sbjct: 127 KGFGYETQNKVRILLLDMFNKAVADNVAMKNPVRNIKVVRDEEKEPRVLSTEEQSAFFDT 186

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---------------------NNIFSI 224
              G+     F   + +GLR  +      + L                         F +
Sbjct: 187 CK-GTFYDNLFNVAISTGLRPGELYALEAEDLDFEKKVIHITKSLSYQKFEGDTGKTFHM 245

Query: 225 KTQKTGTI-ITVELPDG---------FMKLLAMTPIGKET-------FFINNDKQKMNAT 267
              KT +    V +              K +     G +T        F       +NA 
Sbjct: 246 GKTKTKSSYRDVPMNRRCEIALKKQLLQKRVVSGRNGAKTLKGFENLIFTTKYDTPLNAQ 305

Query: 268 QFSIWFKAKATKAGVNK---------SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
            ++   K    +  + +         S H  R   AT   +AG     +    G  T+  
Sbjct: 306 IYADAIKVIVEQINLMREELEQFETFSGHCFRHTFATRCFEAGIQPKTVQKYLGHATLQM 365

Query: 319 A-ETYTK 324
             + YT 
Sbjct: 366 TMDLYTH 372


>gi|326315550|ref|YP_004233222.1| integrase family protein [Acidovorax avenae subsp. avenae ATCC
           19860]
 gi|323372386|gb|ADX44655.1| integrase family protein [Acidovorax avenae subsp. avenae ATCC
           19860]
          Length = 326

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 40/289 (13%), Positives = 79/289 (27%), Gaps = 39/289 (13%)

Query: 75  ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIR---SGVESRKH 128
           +  Y +       LA  +   +     ++   + D      ++ T HIR   + + +   
Sbjct: 15  VLRYLEHVRVEKRLAQRTVTLYTLDLAKLAASARDAGVPLLQLQTAHIRRFVAQMHAGGR 74

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS- 187
                   L+  R  F WA RQ  V  NP   V  P+      +    +D  +   F   
Sbjct: 75  GGRGIALILSGWRGFFTWAARQGLVPHNPVQGVRAPRAPKPLPKALGVDDAVRLAEFEGS 134

Query: 188 ------EGSQPRLAFEFLLYSGLRCSDSCRA------GVQHLQNNIFSIKT------QKT 229
                   ++     E L   GLR  +            Q        ++        K 
Sbjct: 135 SGSDPWLEARDAAMVELLYGCGLRVGELAGLDAVPGPDTQRQGRGWIDLQAAEAHVFGKG 194

Query: 230 GTIITVELPD------------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKA 277
               +V +                    A +       F+     ++         + ++
Sbjct: 195 SKRRSVPVGSAALAALRAWLEVRLQPFGAASGRADAALFLGRRGARLTGQSIWSRLRQRS 254

Query: 278 TKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             AG+      H +R   A+    +      +    G   +   + YT+
Sbjct: 255 QLAGLSTPVHPHMLRHSFASHLLQSSGDLRAVQELLGHANITTTQVYTR 303


>gi|326402598|ref|YP_004282679.1| phage integrase family protein [Acidiphilium multivorum AIU301]
 gi|325049459|dbj|BAJ79797.1| phage integrase family protein [Acidiphilium multivorum AIU301]
          Length = 423

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 52/327 (15%), Positives = 102/327 (31%), Gaps = 39/327 (11%)

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRI---------SFESYFDQIIRKSGD 108
                 P    TT+  +   Y   A+ G +    R                  I    GD
Sbjct: 90  PAAPVEPDGSTTTVGQICDWYLLEANAGRILGRRRRPIRASTLTMDKSRIETHIRPLLGD 149

Query: 109 FDYRKITTKHIRSGVES-------------RKHTP----SSAIQFLTSMRVLFKWAVRQE 151
                +    I +                 R  TP      A + ++S+  +F+ AVR  
Sbjct: 150 RRVSSLKLGDIEAMQADIAAGKTAKGRAGPRGGTPIGGEGVAARTVSSLHSIFEHAVRWG 209

Query: 152 YVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKSFWSEGSQP--RLAFEFLLYSGLR 205
            +  NP   V +        R  +  ++    +  ++  +EG  P    A   LL +G R
Sbjct: 210 KIESNPARGVRKLASAPRERR-LSSVEIARLGEAMRTLAAEGEHPTGLAAIRLLLLTGFR 268

Query: 206 CSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLLAMTPI--GKETFFINNDK 261
             +        +        +   KTG  + V +    + L+   P+  G    F  +  
Sbjct: 269 RMECLALQRAWVDAEQRAIRLPETKTGPQMRV-VGQAAIDLILAQPVTDGSPYVFPADWG 327

Query: 262 QKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
                    +  +        + + H +R   A+++ D G +   + A  G       + 
Sbjct: 328 NGHFIGVVRVLERVCGAARLTDVTPHTLRHTFASVAGDLGFSELTIAALLGHAARGVTQR 387

Query: 322 YTKGADRIRLGIKN-SRRISSVVDSDD 347
           Y    + +R+     S ++ +++D  D
Sbjct: 388 YVHIDEALRVAADRVSAKVVALLDGRD 414


>gi|254486283|ref|ZP_05099488.1| tyrosine recombinase XerC [Roseobacter sp. GAI101]
 gi|214043152|gb|EEB83790.1| tyrosine recombinase XerC [Roseobacter sp. GAI101]
          Length = 314

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 44/249 (17%), Positives = 74/249 (29%), Gaps = 20/249 (8%)

Query: 104 RKSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
              G      IT   +RS +   +     P S  + L++++  ++W   +E       LS
Sbjct: 56  DSIGLGALANITISDMRSWMARTRGPDVGPRSLARKLSAVKAFYRWLAEREGFEPTAVLS 115

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSE-------GSQPRLAFEFLLYSGLRCSDSCRAG 213
              PK   +  RP   +  +                ++       L   GLR S++    
Sbjct: 116 TRSPKFPKKLPRPLAVDAAKAMIDCVELQSPRPWVAARDVAVLTLLWGCGLRISEALGLK 175

Query: 214 VQHLQNNIFSIKTQKTGTIITVELPDGFM----KLLAMTPIGKET---FFINNDKQKMNA 266
                         K G    V +           L   P  +E     F       + A
Sbjct: 176 GADAPLPDVLRIVGKGGKERVVPVLPAARDAVDAYLRACPHPQEHGTALFKAVRGGPLAA 235

Query: 267 TQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              +        + G+  +A  H +R   AT   DAG     +    G  ++   + YT 
Sbjct: 236 RAIAQVMADARMQLGLPATATPHAMRHSFATHLLDAGGDLRAIQELLGHASLSTTQAYT- 294

Query: 325 GADRIRLGI 333
             D  RL  
Sbjct: 295 AVDTARLMD 303


>gi|254470612|ref|ZP_05084016.1| phage integrase family protein [Pseudovibrio sp. JE062]
 gi|211960923|gb|EEA96119.1| phage integrase family protein [Pseudovibrio sp. JE062]
          Length = 415

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 52/347 (14%), Positives = 102/347 (29%), Gaps = 49/347 (14%)

Query: 25  FRKGHGRRIRLPY-------PHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISE 77
           +R   GR  RL         P ++  +   + A   +           +   T+  L+  
Sbjct: 45  YRTLEGRSCRLTLGKYGELTPDQARGLAVDVLAKVRNGEDPTVNRKIIRNAPTVDDLLDM 104

Query: 78  YRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF 136
           Y            S +      ++ + +  G      +T + I     S + TP  A   
Sbjct: 105 YLSEHVEVHNKPKSAVEIRRILERCVRKPLGKAKLASVTRQDISKLHRSMRRTPRQANHV 164

Query: 137 LTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPWTKEDMQQF------------ 182
           L  +   F  A          NP   V+R K + E  R  T +++Q+             
Sbjct: 165 LAIISKAFNLAEIWGLRPEHSNPVRLVKRYK-ENERDRFLTGDELQRLGKTLELAEKEGL 223

Query: 183 -------------------KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNI 221
                              K             + LLY+G R  +      +H+      
Sbjct: 224 PWIIKAKPENRKHLRHDIEKRRTPVNPMALYCLKLLLYTGARLMEIASLEWKHVDFEEGA 283

Query: 222 FSIKTQKTGTIITVELPDGFMKLLAMTPI--GKETFF--INNDKQKMNATQFSIWFKAKA 277
            ++ ++K        +    + +L+  P   G       IN+  + +        ++   
Sbjct: 284 IALPSKKGDGRKPHPVSGNVLDILSDIPRLDGSPYVLARINDPTRHITKELVENAWQRVR 343

Query: 278 TKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
             A + +   H +R    T +A +G+ A  +      + V     Y 
Sbjct: 344 HHADIPDVRIHDLRHTVGTFAAQSGSNAFLISHLLRHRNVTITNRYV 390


>gi|86159979|ref|YP_466764.1| Phage integrase [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85776490|gb|ABC83327.1| Phage integrase [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 275

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 47/267 (17%), Positives = 91/267 (34%), Gaps = 25/267 (9%)

Query: 101 QIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINP 157
            +    G      I    I      +     +  S    L ++R L   AV  E +   P
Sbjct: 5   HLSPFFGKKKLIDIGPAEIEEFKAKKLAEGQSKKSINNHLAALRKLLNLAVEWEVIPRAP 64

Query: 158 CLSVERPKRKTE---GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGV 214
              V+  + KTE     +  T ++ ++     +   + R      L +GLR  +      
Sbjct: 65  --KVKGFRAKTEYITEEQFLTFDEAERL--VHAAAPEWRTFIITALKTGLRVGELLALKW 120

Query: 215 QHLQ--NNIFSIKTQ---------KTGTIITVELPDGFMKLLAMTPIGKETF-FINNDKQ 262
           + L        ++           K G    V L D  + +L      K T+ F   D +
Sbjct: 121 EDLDLVAGQLVVRRTLWHKQEGPPKGGRNRKVPLSDEAIAVLKAHRHLKGTYVFCEADGR 180

Query: 263 KMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
           ++  ++      +   +A + K  + HG+R   A+     G +   +    G ++++   
Sbjct: 181 RLTHSRVKDVVPSTCRRAQLAKRLTTHGLRHTFASHLVMRGVSLMAVKELLGHESIEMPL 240

Query: 321 TYTK-GADRIRLGIKNSRRISSVVDSD 346
            Y+    D  R  +K     SSV + +
Sbjct: 241 RYSHLSPDVKRDAVKLLDAPSSVANGN 267


>gi|257879743|ref|ZP_05659396.1| site-specific recombinase [Enterococcus faecium 1,230,933]
 gi|261209087|ref|ZP_05923490.1| predicted protein [Enterococcus faecium TC 6]
 gi|289566304|ref|ZP_06446734.1| predicted protein [Enterococcus faecium D344SRF]
 gi|294616983|ref|ZP_06696703.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium E1636]
 gi|314940614|ref|ZP_07847744.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133a04]
 gi|314942809|ref|ZP_07849625.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133C]
 gi|314953492|ref|ZP_07856407.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133A]
 gi|314992553|ref|ZP_07857972.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133B]
 gi|314997829|ref|ZP_07862737.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133a01]
 gi|257813971|gb|EEV42729.1| site-specific recombinase [Enterococcus faecium 1,230,933]
 gi|260076914|gb|EEW64638.1| predicted protein [Enterococcus faecium TC 6]
 gi|289161880|gb|EFD09750.1| predicted protein [Enterococcus faecium D344SRF]
 gi|291590137|gb|EFF21926.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium E1636]
 gi|313588144|gb|EFR66989.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133a01]
 gi|313592920|gb|EFR71765.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133B]
 gi|313594474|gb|EFR73319.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133A]
 gi|313598444|gb|EFR77289.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133C]
 gi|313640201|gb|EFS04782.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133a04]
          Length = 388

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 65/376 (17%), Positives = 126/376 (33%), Gaps = 69/376 (18%)

Query: 11  VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
           +   +  +GK  YY +KG              F     + L  +  K E  ++   KP+ 
Sbjct: 18  LYVRKDENGKQEYYVKKG--------------FKTEKEAKLHEARKKVEIEDTGYHKPSN 63

Query: 71  --LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128
                +  E+  S          + + + +   I+ K G+    KIT  H ++ V     
Sbjct: 64  DLFITVYEEWLPSYRNRVQETTYQRTKDLFRLHILPKFGNKSISKITPVHCQNAVNEWAL 123

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-PWTKEDMQQFKSFW- 186
              +  Q  +    +F++A+  E +  NP  +   PKR+ +     ++ E+++ F     
Sbjct: 124 KFKNIKQLKSYSSQIFEYAIFAELLHRNPMANTNLPKREKKENENYFSLEELKAFWDILN 183

Query: 187 -SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKT--------QKTGTIITV 235
             E  +  L F+ L+ +G+R  +        +  +  +  ++         +K     TV
Sbjct: 184 KEEPLKHILIFQLLITTGIRKGELAALHWSDIYFEEQLMYVRKSYATIRNEEKNARRKTV 243

Query: 236 ELPDGFMKL--LAMTPIGKETF------------------------------FINNDK-- 261
            +      +    + PI  +T                               ++N D   
Sbjct: 244 RIQKNTKNISSERILPIDAQTIEMLKIWKKEQARELLQFGINTNTKNQLIFTYVNADGDI 303

Query: 262 -QKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
            Q ++A   +   K    K      + HG R   AT+  + GA+  E     G K  +  
Sbjct: 304 NQPLHADYSNNILKRLEKKYKFKHVTIHGFRHTHATLLLEGGASIKETQDRLGHKNAETT 363

Query: 320 ----ETYTKGADRIRL 331
                  T+ A R  L
Sbjct: 364 LNTYSHVTEKAQRNAL 379


>gi|225570002|ref|ZP_03779027.1| hypothetical protein CLOHYLEM_06097 [Clostridium hylemonae DSM
           15053]
 gi|225161472|gb|EEG74091.1| hypothetical protein CLOHYLEM_06097 [Clostridium hylemonae DSM
           15053]
          Length = 384

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 52/301 (17%), Positives = 105/301 (34%), Gaps = 32/301 (10%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH 128
           +   L S Y +S     L  ++ ++ ++    +I+   G+    +I    IR        
Sbjct: 77  SFSDLYSAYFESMK-HRLRDSTLLTKDNLIKTKILPYFGNIPINQIDPGAIREWQNIMCG 135

Query: 129 TPSSAIQFLTS---------MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP-WTKED 178
              +  +  +S         +  +F +AVR   +  NPCL+     +K  G +  W  E+
Sbjct: 136 QQMNNGKHYSSTYLKAMNNQLSTVFNYAVRYYNLPSNPCLAAGSMGKKQAGQKTFWKPEE 195

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII--TVE 236
              F  ++SE  +  L F  L Y+G+R  +              ++  +K+   I  T  
Sbjct: 196 FHIFLEYFSENMEMYLIFSLLYYTGVRIGEMLAFSYDDFNLQKGTVTVRKSYRRIRKTDY 255

Query: 237 LPDG-------FMKLLAMTPIGKETFFINNDKQKMNATQF--------SIWFKAKATKAG 281
           +           + L A      + +F   +   M+   F        S +         
Sbjct: 256 ITPPKTPKSFRVIALPAFLIEQLQKYFSLKEGSGMDERIFSGISRYHISKFMNEACENTK 315

Query: 282 VNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK-GADRIRLGIKNSRR 338
           V K   H +R   A++  + G +   +    G + V+     Y+     R +   ++  R
Sbjct: 316 VKKIRIHDLRHSHASLLIELGVSPVLIAERLGHENVETTLNIYSHLYPHRQKELAESLDR 375

Query: 339 I 339
           +
Sbjct: 376 L 376


>gi|254457347|ref|ZP_05070775.1| phage integrase [Campylobacterales bacterium GD 1]
 gi|207086139|gb|EDZ63423.1| phage integrase [Campylobacterales bacterium GD 1]
          Length = 278

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 35/258 (13%), Positives = 86/258 (33%), Gaps = 19/258 (7%)

Query: 76  SEYRKSA-HWGSLAVNSRISF-ESYFDQII--RKSGDFDYRKITTKHIRSGVESRKHTPS 131
            E+ +S   +   +  +  S+ E+  + +       +  +  I     R  +      P 
Sbjct: 10  VEFLQSLEDFRGYSELTIKSYDEAITEALRYVEIIEEDTHTTINLMPYRIKISQL--NPK 67

Query: 132 SAIQFLTSMRVLFKWAVRQE---YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           +  + L+++R   K+    +   Y+  +     E  K      +P + + +   ++    
Sbjct: 68  TISKKLSAIRTFVKYLNDNKIKIYLKAD-----ESVKVAKTLPKPISHKHI--LEALEHA 120

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248
               R     L   GLR S+     +  + +    +   K      V L     +L+   
Sbjct: 121 EFYERFVVTMLYSLGLRISELASLKLSDISDEWIRV-LGKGNKHRDVPLLRTTRELIDEY 179

Query: 249 PIGK--ETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHE 306
                 + F    + ++++             + G+  + H +R   AT   ++ A   +
Sbjct: 180 LSNNCPKIFLFEANDERLSENSLRYTVNKVFKRVGLKVTPHQLRHSYATALLNSSAPIAD 239

Query: 307 LMATYGWKTVDQAETYTK 324
           +    G  ++   + YTK
Sbjct: 240 VSELLGHSSMATTQIYTK 257


>gi|161613589|ref|YP_001587554.1| hypothetical protein SPAB_01311 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|161362953|gb|ABX66721.1| hypothetical protein SPAB_01311 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 359

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 45/285 (15%), Positives = 91/285 (31%), Gaps = 30/285 (10%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--K 127
           T+   I  Y       +L+VN+     +    +  K  +    ++TT+HI   +ES   +
Sbjct: 75  TVSAWIDRYEVLLQRRNLSVNTYKIRSNQLATVREKMEEIILAEVTTRHIAKFLESWITE 134

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              + A    + +  +F+ A+ + ++  NP  +   P+ K    R      ++ + +  +
Sbjct: 135 GKKTMAGAMRSVLSDMFREAIVEGHIVKNPVEATRIPEIKVARERL----QLETYNATRA 190

Query: 188 EGSQPRLAF----EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
                   F    +  L +G R  D        + +N   +   KTG  I + L      
Sbjct: 191 AAEHMPAWFPLAMDLALVTGQRREDIVNMKFSDVVDNRLYVTQIKTGMKIAIPLSLTLEA 250

Query: 244 --------LLAMTPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNKS---- 285
                   +     + +    I      N+    ++    +  F      +GVN S    
Sbjct: 251 PGLRLGTVIDRCRLVSRTDIMISAGIRKNSPTGNIHPDGLTKTFVKARKASGVNFSNNPP 310

Query: 286 -AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             H +R   A                 G  + +  + Y    D  
Sbjct: 311 TFHEIR-SLAGRLYKNEHGEVFAQKLLGHTSANTTKLYLDERDDK 354


>gi|315144921|gb|EFT88937.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX2141]
          Length = 392

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 63/392 (16%), Positives = 124/392 (31%), Gaps = 72/392 (18%)

Query: 1   MTPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60
           M    R    +T      GKI +YF+     R       E+    AY+        K++ 
Sbjct: 1   MENMSRFKKHITAT----GKITWYFQAFRTTRRGFNSKREAQL--AYLEMEKQHRNKQKR 54

Query: 61  INS-PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119
           + S  +    + KW   EY +S +     V +    E     + R  G      ++++ +
Sbjct: 55  LASNDKFSVVSQKWF--EYYRSLN--EQKVATYDKREEQVKILNRWIGGKKLSSLSSEEL 110

Query: 120 RSGVESRKHT----------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK-- 167
           +  +   K             +S    +  + ++F +  ++  +  NP   V+ PK +  
Sbjct: 111 QKFLFILKEKGIDGVNVGYAKNSLQSLVQVLNMVFNYCKKKNLINENPMKFVKMPKYQLS 170

Query: 168 ---------TEGIRPWTKEDMQQFKSF--WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216
                    +   +  T ++++ F ++    E     + F  L Y+G R S++     Q 
Sbjct: 171 LKDLKESVNSLEDKFLTVDELRAFLNYGIVYEELPMSVLFHVLFYTGCRVSEALALQPQD 230

Query: 217 LQNNI-----------------FSIKTQKT-GTIITVELPD-------GFMKLLAMTPIG 251
           +                     F I+T KT  +   V +           + +L  T   
Sbjct: 231 IDFERNEILFYKQTAVKGKSKDFRIETTKTVSSARRVPVTPLVMEKLQELIDVLNKTKRN 290

Query: 252 -----KETFFI-----NNDKQKMNATQFSIWFKAKATKAGVNKSAHG--VRKFSATISAD 299
                 ET+                   +   K    + G+NK  H    R   A++ A+
Sbjct: 291 SNFVVDETYLFVYLDPGKRGVPYRREYVNDHVKRCVERCGINKDFHTHLARHTMASLVAE 350

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRL 331
              +   L    G      ++ Y       +L
Sbjct: 351 Y-CSWDVLKDHLGHTDSTTSKIYRHLTSTEKL 381


>gi|260433010|ref|ZP_05786981.1| phage integrase family protein [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260416838|gb|EEX10097.1| phage integrase family protein [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 417

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 52/304 (17%), Positives = 101/304 (33%), Gaps = 26/304 (8%)

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119
            I +   +   +K L+ +Y K  H   L   S         + + + GD D  ++T + I
Sbjct: 96  RIEAQLSERDKVKTLLEQYAK-RHLSKLRSGS-EVKRRLETEFLPRYGDHDIHEVTKRDI 153

Query: 120 RSGVESRKHTPS--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
              +E    +    +A +    +   F W + ++ + I+P   V+   ++    R    +
Sbjct: 154 LELLEKIADSGRITTANRMRLYLSGFFNWCLERDAIPISPVQGVKPVAKEKSRDRVLNDD 213

Query: 178 DMQQFKSFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI--KTQKTGTIIT 234
           +++ F         P R A + LL +G R ++        L  + + +  +  K G    
Sbjct: 214 EIRWFWKACERAGYPWRQAGQTLLLTGQRLNEVLGMTDDELHGDAWHLSAQRTKNGREHL 273

Query: 235 VELPDGFMKLL---AMTPIGKETFFINNDKQK----MNATQFSIWFKAKATKAG------ 281
           V L      +L             F    +        A      F A+  +A       
Sbjct: 274 VPLSQAARDVLSSVERIESPSRLLFTTTGRTPICGHFKARNRLSRFMAEIAEAETGEAIE 333

Query: 282 -VNKSAHGVRKFSATISADAGATAHELMATYGWKTVD---QAETYTKG--ADRIRLGIKN 335
             + + H +R+ +AT  A  G       A     +         Y +   AD  R  ++ 
Sbjct: 334 IPHWTFHDLRRTAATGMARLGIPVRVTEAVLNHVSGTGGGIVAVYQRHDFADEKRKALEA 393

Query: 336 SRRI 339
             R 
Sbjct: 394 WARF 397


>gi|88607956|ref|YP_506332.1| phage integrase family site specific recombinase [Neorickettsia
           sennetsu str. Miyayama]
 gi|88600125|gb|ABD45593.1| site-specific recombinase, phage integrase family [Neorickettsia
           sennetsu str. Miyayama]
          Length = 307

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 49/265 (18%), Positives = 96/265 (36%), Gaps = 31/265 (11%)

Query: 88  AVNSRISFESYFDQIIRKSGDFD--------YRKITTKHIRSGVESRKH---TPSSAIQF 136
           + N+ +++       +     F            I +K +R+ + SR+    +  +  + 
Sbjct: 27  SSNTLVAYSRDLMAFLDFLSTFRGEPVRFTSLDCIDSKDLRAWLASRRKNSISFRTNARA 86

Query: 137 LTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQF---KSFWSE 188
           L+S++  FK+ A  +  +  +  L V    +     R  T +++    ++F   K+ W  
Sbjct: 87  LSSVKSFFKYLAKHKGIINED-VLGVVLRFKPNTLPRSLTFKEIIELIEKFSFLKTSWIV 145

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL--- 245
                L +  L  SGLR S++    V  L N+   I   K G    + L       L   
Sbjct: 146 KRNIALCY-LLYGSGLRISEALSLTVADLTNSEIKII-GKGGRERMIRLLPIVRVALSDY 203

Query: 246 ----AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISAD 299
                  P      F++ +  K+  T  +  F +      +  + + H +R   AT    
Sbjct: 204 IASCPFQPDAGGFLFLDRNGNKLCRTAVARAFLSIRRGFNLPDHITPHALRHSFATHLLQ 263

Query: 300 AGATAHELMATYGWKTVDQAETYTK 324
            G    ++    G  ++   E YTK
Sbjct: 264 EGVGVRKIQELLGHASLASTEVYTK 288


>gi|269102990|ref|ZP_06155687.1| phage integrase family protein [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268162888|gb|EEZ41384.1| phage integrase family protein [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 291

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 43/271 (15%), Positives = 92/271 (33%), Gaps = 18/271 (6%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHT 129
            +L  ++            +  ++     +I  +  D     +TT  ++       + H+
Sbjct: 10  DYLYEQHLTHLTLQGKRPATIDAYSRALRRITHQL-DKSPDTLTTDDLKRYFTQLIKTHS 68

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            S+       ++  FK  +++++  +N    + +P          T  ++    +  S+ 
Sbjct: 69  WSTVKIDRNGLQFFFKHVLQRDWEWLN----IVKPPHVKTLPDILTPSEVSLLINATSQ- 123

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDG-FMKLLA 246
            + ++ F  L   GLR  +     V  + ++     I+  K G    + LP      L  
Sbjct: 124 LRYQVFFLTLYSLGLRLGEGLNLTVGDIDSHRMLVHIRQGKGGKDRFIPLPRRTLYALRY 183

Query: 247 MTPIGKETFFI-----NNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISAD 299
                K + ++     N +   M+        KA     G+ KS   H +R   AT   +
Sbjct: 184 YWQTHKNSRYLFPSQFNLNHTVMDRGGVQKAMKAVIKSCGITKSISPHNLRHSYATHLLE 243

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIR 330
            G     +    G  +++    YT   D  R
Sbjct: 244 RGLDLRSVQHLLGHNSLNATAKYTHLTDISR 274


>gi|198244121|ref|YP_002215215.1| phage integrase [Salmonella enterica subsp. enterica serovar Dublin
           str. CT_02021853]
 gi|197938637|gb|ACH75970.1| phage integrase [Salmonella enterica subsp. enterica serovar Dublin
           str. CT_02021853]
          Length = 359

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 49/287 (17%), Positives = 95/287 (33%), Gaps = 34/287 (11%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--- 126
           T+   I  Y       SL+VN+     +    +  K G+    ++TT+HI   +ES    
Sbjct: 75  TVSAWIDRYEVLLQRRSLSVNTYKIRSNQLATVREKMGEIILAEVTTRHIAKFLESWITE 134

Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
            K+T + A++  + +  +F+ A+ + ++  NP  +   P+ K    R      ++ + + 
Sbjct: 135 GKNTMAGAMR--SVLSDMFREAIVEGHIVKNPVEATRIPEIKVARERL----QLETYNAT 188

Query: 186 WSEGSQPRLAF----EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241
            +        F    +  L +G R  D        + +N   +   KTG  I + L    
Sbjct: 189 RAAAEHMPAWFPLAMDLALVTGQRREDIVNMKFSDVVDNRLYVTQIKTGMKIAIPLSLTL 248

Query: 242 MK--------LLAMTPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNKS-- 285
                     +     + +    I      N+    ++    +  F      +GVN S  
Sbjct: 249 EAPGLRLGTVIDRCRLVSRTDIMISAGIRKNSPTGNIHPDGLTKTFVKARKASGVNFSNN 308

Query: 286 ---AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
               H +R   A                 G    +  + Y    D  
Sbjct: 309 PPTFHEIR-SLAGRLYKNEHGEVFAQKLLGHTLANTTKLYLDERDDK 354


>gi|320202251|gb|EFW76823.1| Shufflon-specific DNA recombinase [Escherichia coli EC4100B]
          Length = 374

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 45/274 (16%), Positives = 97/274 (35%), Gaps = 19/274 (6%)

Query: 65  RKKPTTLKWLISEYRKSAHWGS---LAVNSRIS---FESYFDQIIRKSGDFDYRKITTKH 118
           + +  T+   + +Y K+        L    R++        ++ +      D      + 
Sbjct: 6   KIRKMTISRALDKYLKTVSIHKKGHLQEFYRVNVIKRHPIAERYMDDITTVDIANYRDQR 65

Query: 119 IRSG--VESRKHTPSSAIQFLTSMRVLFKWA-VRQEYVAINPCLSVERPKRKTEGIRPWT 175
           +        R+ T ++    L  +  LF  A V      +NP   V +PK  +   R  T
Sbjct: 66  LAQINPRTGRQITGNTVRLELALLSSLFNIARVEWGTCRMNPVELVRKPKISSGRDRRLT 125

Query: 176 KEDMQQFKSFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTGTI 232
             + ++   ++ E +Q   + F   L + +R  +      +H+     +  + T K G  
Sbjct: 126 SGEERRLSRYFKEKNQALYVIFHLALETAMRQGEILSLRWEHVDLQHGVAHLPTTKNGAP 185

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRK 291
             V L       L M P       +N +     ++ F   ++    +  + N   H +R 
Sbjct: 186 RDVPLSRKARNYLQMLPTQ-----LNGNIFSYTSSGFKSAWRTALHELKIENLHFHDLRH 240

Query: 292 FSATISADAG-ATAHELMATYGWKTVDQAETYTK 324
            + +   + G     E+ A  G ++++  + YT 
Sbjct: 241 EAISRFFELGTLNVIEVAAISGHRSLNMLKRYTH 274


>gi|116751410|ref|YP_848097.1| phage integrase family protein [Syntrophobacter fumaroxidans MPOB]
 gi|116700474|gb|ABK19662.1| phage integrase family protein [Syntrophobacter fumaroxidans MPOB]
          Length = 415

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 59/376 (15%), Positives = 106/376 (28%), Gaps = 60/376 (15%)

Query: 8   PPFVTKERTRHGKI----IYYFRKGHGRRIRLPYPHESTFIPAYMSALT---------GS 54
           P    +E  R G      +YY       ++ L       F+     A           G 
Sbjct: 9   PGVFYREADRIGGKGAEKVYYILFKQDGKV-LEEKVGRQFVDDMTPARAAGIRAERIEGK 67

Query: 55  TPKREYINSPRKKPT-----------TLKWLISEY-RKSAHWGSLAVNSRISFESYFDQI 102
            P R+ I   R+              T+  L  EY R +     + V     FE +   I
Sbjct: 68  RPSRKEIKEEREAQEHAVKEAEANRWTITRLWEEYKRGTPGLKGI-VTDENRFEKHIKPI 126

Query: 103 IRKSGDFDYRKITTKHIRSGVESRKHTPS-----------------------SAIQFLTS 139
                  +   +    +R G+  +   P+                       +    L  
Sbjct: 127 FGDKQPHELGALDVDRLRIGLLKKARKPAVQKTPGDSKPGTVKKSVDPLKPGTVKNVLEL 186

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW--SEGSQPRLAFE 197
           +R +  + V++         ++E PK         T +++ +        E        +
Sbjct: 187 LRRIINFGVKKNLCTG-AGFAIELPKVNNLRTEDLTPDELAKLMDAIEKDENLIAANLMK 245

Query: 198 FLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF 255
             L++G+R  +  R     L        I+  K G   T+ + +   K+L         F
Sbjct: 246 MALFTGMRRGELFRLKWSDLDFERGFIHIRGPKGGVDQTIPVNEEARKILQSHRRTNSGF 305

Query: 256 FINNDKQKMNATQFSIWFKAKATKAGVNKSA---HGVRKFSATISADAGA-TAHELMATY 311
                                   AG+ K     HG+R   A++ A +G    + L    
Sbjct: 306 VFPGRGGHQRID-IHKSVNKIKEAAGLPKGFRALHGLRHAYASMLASSGKVDLYTLQRLL 364

Query: 312 GWKTVDQAETYTKGAD 327
             K+    + Y    D
Sbjct: 365 THKSPTMTQRYAHLRD 380


>gi|29376385|ref|NP_815539.1| phage integrase family site specific recombinase [Enterococcus
           faecalis V583]
 gi|227553657|ref|ZP_03983706.1| bacteriophage integrase [Enterococcus faecalis HH22]
 gi|256619313|ref|ZP_05476159.1| phage integrase [Enterococcus faecalis ATCC 4200]
 gi|256961658|ref|ZP_05565829.1| phage integrase [Enterococcus faecalis Merz96]
 gi|256964874|ref|ZP_05569045.1| phage integrase [Enterococcus faecalis HIP11704]
 gi|257090143|ref|ZP_05584504.1| phage integrase [Enterococcus faecalis CH188]
 gi|293383362|ref|ZP_06629275.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis R712]
 gi|293388986|ref|ZP_06633471.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis S613]
 gi|294614272|ref|ZP_06694191.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium E1636]
 gi|307272962|ref|ZP_07554209.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0855]
 gi|307275714|ref|ZP_07556854.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX2134]
 gi|312903582|ref|ZP_07762762.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0635]
 gi|312907810|ref|ZP_07766801.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis DAPTO 512]
 gi|312910429|ref|ZP_07769276.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis DAPTO 516]
 gi|29343848|gb|AAO81609.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis V583]
 gi|227177214|gb|EEI58186.1| bacteriophage integrase [Enterococcus faecalis HH22]
 gi|256598840|gb|EEU18016.1| phage integrase [Enterococcus faecalis ATCC 4200]
 gi|256952154|gb|EEU68786.1| phage integrase [Enterococcus faecalis Merz96]
 gi|256955370|gb|EEU72002.1| phage integrase [Enterococcus faecalis HIP11704]
 gi|256998955|gb|EEU85475.1| phage integrase [Enterococcus faecalis CH188]
 gi|291079153|gb|EFE16517.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis R712]
 gi|291081767|gb|EFE18730.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis S613]
 gi|291592931|gb|EFF24521.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium E1636]
 gi|306507590|gb|EFM76720.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX2134]
 gi|306510576|gb|EFM79599.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0855]
 gi|310626838|gb|EFQ10121.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis DAPTO 512]
 gi|310633458|gb|EFQ16741.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0635]
 gi|311289702|gb|EFQ68258.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis DAPTO 516]
 gi|315032050|gb|EFT43982.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0017]
 gi|315162894|gb|EFU06911.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0645]
 gi|315575946|gb|EFU88137.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0309B]
 gi|315577866|gb|EFU90057.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0630]
 gi|315580736|gb|EFU92927.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0309A]
          Length = 392

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 63/392 (16%), Positives = 124/392 (31%), Gaps = 72/392 (18%)

Query: 1   MTPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60
           M    R    +T      GKI +YF+     R       E+    AY+        K++ 
Sbjct: 1   MENMSRFKKHITAT----GKITWYFQAFRTTRRGFNSKREAQL--AYLEMEKQHRNKQKR 54

Query: 61  INS-PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119
           + S  +    + KW   EY +S +     V +    E     + R  G      ++++ +
Sbjct: 55  LASNDKFSVVSQKWF--EYYRSLN--EQKVATYDKREEQVKILNRWIGGKKLSSLSSEEL 110

Query: 120 RSGVESRKHT----------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK-- 167
           +  +   K             +S    +  + ++F +  ++  +  NP   V+ PK +  
Sbjct: 111 QKFLFILKEKGIDGVNVGYAKNSLQSLVQVLNMVFNYCKKKNLINENPMKFVKMPKYQLS 170

Query: 168 ---------TEGIRPWTKEDMQQFKSF--WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216
                    +   +  T ++++ F ++    E     + F  L Y+G R S++     Q 
Sbjct: 171 LKDLKESVNSLEDKFLTVDELRAFLNYGIVYEELPMSVLFHVLFYTGCRVSEALALQPQD 230

Query: 217 LQNNI-----------------FSIKTQKT-GTIITVELPD-------GFMKLLAMTPIG 251
           +                     F I+T KT  +   V +           + +L  T   
Sbjct: 231 IDFERNEILFYKQTAVKGKSKDFRIETTKTVSSARRVPVTPLVMEKLQELIDVLNKTKRN 290

Query: 252 -----KETFFI-----NNDKQKMNATQFSIWFKAKATKAGVNKSAHG--VRKFSATISAD 299
                 ET+                   +   K    + G+NK  H    R   A++ A+
Sbjct: 291 SNFVVDETYLFVYLDPGKRGVPYRREYVNDHVKRCVERCGINKDFHTHLARHTMASLVAE 350

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRL 331
              +   L    G      ++ Y       +L
Sbjct: 351 Y-CSWDVLKDRLGHTDSTTSKIYRHLTSTEKL 381


>gi|169245911|gb|ACA50932.1| site-specific recombinase [Mycobacterium marinum DL240490]
          Length = 345

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 45/314 (14%), Positives = 98/314 (31%), Gaps = 57/314 (18%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQII-------RKSGDFDYRKITTKHIRSGVESRKHT 129
           E+         + ++  ++   F+ +                  +  + +R+       T
Sbjct: 21  EFLADRAIRKPSPHTTKAYRQDFEAVALLLAGGADAISTLPTNALNKESLRAAFAVYAET 80

Query: 130 --PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ------- 180
              +S  +  ++   L  +      +  NP  ++ RPK      + +T + +        
Sbjct: 81  HSAASIRRCWSTWNTLCTFLYTANLLDANPMPAIGRPKVPKALPKSYTADAVNNLIAAID 140

Query: 181 -----QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---NNIFSIKTQKTGTI 232
                  +S W E  + R      L +GLR  +  RA +  ++   +      + K    
Sbjct: 141 TDDGSARRSNWPE--RDRAIIFTALLTGLRADELIRANIGDIRCNADGGVLHVSGKGNKD 198

Query: 233 ITVELPDGFMKLLAM-----------------------TPIGKETFFINNDKQKMNATQF 269
             +      +++L                                 F+ +D +++     
Sbjct: 199 RRIPCDTKLIEMLQRYLQTREDRIPHLRKRSASPDAMGRFSPTAPLFVGSDGERITRGTL 258

Query: 270 SIWFKAKATKAGVNKS------AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
                    KAG+N         HG+R   AT  A+A  + + LM   G +++  ++ Y 
Sbjct: 259 QYRILRGFKKAGINNDRAAGALVHGLRHTFATELANANVSVYALMKLLGHESMVTSQRYV 318

Query: 324 --KGADRIRLGIKN 335
               AD  R   +N
Sbjct: 319 DGAAADTRRAAERN 332


>gi|126640131|ref|YP_001083115.1| site-specific tyrosine recombinase [Acinetobacter baumannii ATCC
           17978]
 gi|126386015|gb|ABO10513.1| site-specific tyrosine recombinase [Acinetobacter baumannii ATCC
           17978]
 gi|322506426|gb|ADX01880.1| Site-specific tyrosine recombinase [Acinetobacter baumannii 1656-2]
 gi|323517823|gb|ADX92204.1| site-specific tyrosine recombinase [Acinetobacter baumannii
           TCDC-AB0715]
 gi|323519204|gb|ADX93585.1| site-specific tyrosine recombinase [Acinetobacter baumannii
           TCDC-AB0715]
          Length = 310

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 31/282 (10%), Positives = 88/282 (31%), Gaps = 36/282 (12%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---TP 130
           L+ ++       + +  +  + ++  +     + +    +I    IR+ +  R       
Sbjct: 7   LLKKWLDEYLLANKSNETIYTLKNSLNLFFEYT-NLALEEIEASDIRTFIAYRAQNGVGV 65

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           S+  + ++++R  F +  +++ +  NP   ++  K      +     ++           
Sbjct: 66  STLKKNISAIRTFFHYLTKEKLINFNPAEDIKIKKSSKVLPKF---HEVTVINEVLDSNK 122

Query: 191 --------------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV- 235
                         +     E     GLR  +     +++++     ++    G    + 
Sbjct: 123 NLEFERPSSTVIFKRDLALIEIAYSCGLRLEEIHSLQIENVEVKRKQVRVTGKGNKTRII 182

Query: 236 -----------ELPDGFMKLLAMTPIGKE-TFFINNDKQKMNATQFSIWFKAKATKAG-- 281
                      E      +++      K    F+     +++  Q +   K     AG  
Sbjct: 183 PLGSKAIEAYLEWLPLREEIMNKDTNQKHNYVFVTTTGAQLSRVQINKRIKNAFKLAGYP 242

Query: 282 VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           +  + H +R   AT   +      E+    G   ++  + YT
Sbjct: 243 IQSNPHMLRHSFATHLINNSVGIREIQEMLGHSNLNTTQIYT 284


>gi|254454307|ref|ZP_05067744.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198268713|gb|EDY92983.1| phage integrase [Octadecabacter antarcticus 238]
          Length = 422

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 43/256 (16%), Positives = 88/256 (34%), Gaps = 11/256 (4%)

Query: 82  AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMR 141
             WG + V    S++          G     K    +    ++  K TP  A +    +R
Sbjct: 123 PAWGRMLVTEVSSYDVELLLNRVAEGRARPAKAKPNNRARKLQGSKPTPVRANRVGEVVR 182

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA--FEFL 199
            +F +AV+  +   NP +   RP+ +T   R  ++E++ +  +        R A      
Sbjct: 183 KMFAYAVKWGWREDNPAMGF-RPRMETPRERYLSQEEIARLATALDRAEDTRAANIIRIC 241

Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIITVELPDGFMKLLAMTPIG---K 252
           + +G R  +  +A  +       S      T K   +  V + D    ++          
Sbjct: 242 MLTGARVGEVRQARFEDFNLEHLSWTKPATTTKQRRVHRVPISDDAAVIVRQRRQAVYPG 301

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATY 311
             +   +D       +   ++K    +AG+ +   H +R   A++    GA+   +    
Sbjct: 302 CPWLFPSDTPGHPVQEVRRFWKRIQREAGIEDVRIHDLRHTFASLLVSGGASLEMIGKLL 361

Query: 312 GWKTVDQAETYTKGAD 327
           G   +   + Y    D
Sbjct: 362 GHSQMQTTQRYAHLMD 377


>gi|317480894|ref|ZP_07939975.1| phage integrase [Bacteroides sp. 4_1_36]
 gi|316902979|gb|EFV24852.1| phage integrase [Bacteroides sp. 4_1_36]
          Length = 356

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 81/226 (35%), Gaps = 16/226 (7%)

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
               ++   ++A   LT ++ +   A     +  N    + R K      +  TKE++ Q
Sbjct: 128 MHNGKRMMGTTANNNLTKLKCILAIAYEDGLLKENIAKKLVRAKAHGNKRQFLTKEELLQ 187

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNI-FSIKTQKTGTIITVE 236
                 +    R A  F   +GLR SD  R   +++           I T+KT T   + 
Sbjct: 188 LSQTPCKSDVLRRAGLFSCLTGLRLSDCIRLQWENIIKLADGGWGMDIITKKTSTAAILP 247

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSA 294
           + +  ++L      G    F     + +  +  +++ K     +G+ K  + H  R   A
Sbjct: 248 ISEEALQL--CGERGTGQVF-----KNLTNSTVTLYLKPWIKASGIEKHITFHCFRHTFA 300

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
           T+    G   + +        +   + Y    D ++     + RIS
Sbjct: 301 TLQLAEGTDIYTVSKLLTHSNLATTQVYADVVDELKR--DAAERIS 344


>gi|257898367|ref|ZP_05678020.1| phage integrase [Enterococcus faecium Com15]
 gi|257836279|gb|EEV61353.1| phage integrase [Enterococcus faecium Com15]
          Length = 378

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 53/365 (14%), Positives = 117/365 (32%), Gaps = 55/365 (15%)

Query: 15  RTRHGKIIYYFR--KGHGRRIRLPYPHE---STFIPAYMSALTGSTPKREY-INSPRKKP 68
           R R  +  YYF      G R ++             A    L+      +Y + +  +  
Sbjct: 6   RKRGKRWYYYFEDINDDGSRKKVEKVGGDTRPEAEAALRKVLSDIDETGQYFLGTDTRVK 65

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESR- 126
             L + + EY K     +L  N+  ++     + I    G      ++   +++ + +  
Sbjct: 66  QYLDFWMKEYVK----LNLKYNTYENYRFTIKNHINGYLGKKKLTDLSPALLQNFINAEF 121

Query: 127 -----KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK-----TEGIRPWTK 176
                K T +     L +   +  +      +  NP L V+ PK +      + ++  + 
Sbjct: 122 KKGYSKKTMTITHSVLKNALNMAVY--PWGLIKQNPMLYVKIPKYEERPTTKKDLKIISL 179

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK-------- 228
           ED         EG    +      Y+G+R  + C     ++  +  +I  +K        
Sbjct: 180 EDFDHMLEITPEGHPFYIPLNIGFYTGMRVGEVCGLTWDNVDFSNGTITVEKQMVKNDGA 239

Query: 229 --------TGTIITVELPDGFMKLLAMTP--------------IGKETFFINNDKQKMNA 266
                   + +  T+ +    + +L                  I         D   +  
Sbjct: 240 WVYGTPKTSSSNRTIFIGQTLLAILKKHKKQQLENRMKYGKLYIDSNAVCTKEDGGLVTP 299

Query: 267 TQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKG 325
           +      +  +    ++ + H +R   AT+  + GA   E+    G   +    +TY+  
Sbjct: 300 SVVKWNTRRISNALSLSFNFHSLRHTHATLLLENGAKMKEISERLGHSRISITMDTYSHV 359

Query: 326 ADRIR 330
            D++R
Sbjct: 360 TDKMR 364


>gi|254450263|ref|ZP_05063700.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198264669|gb|EDY88939.1| phage integrase [Octadecabacter antarcticus 238]
          Length = 315

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 43/266 (16%), Positives = 82/266 (30%), Gaps = 17/266 (6%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132
            L     +     ++   ++              G       T   +R+       T  +
Sbjct: 28  ALRQRMIEDMRIRAIGETTQKGHIRAIKHFATFLGRSPDTA-TPDELRAYQLHMTDTEVT 86

Query: 133 A---IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM-QQFKSFWSE 188
                  + S+R+ F     +E +       ++  ++        + E++     +    
Sbjct: 87  TSTFNTRIVSLRLFFGVTCGREEMKR----YMQFRRKPRRLPVVLSVEEIGDLLAAVPGP 142

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLLA 246
           G   R A      +GLR S+ C   V  + +      +   K G      L  G + LL 
Sbjct: 143 GLTYRAALGISYGAGLRASEVCHLKVVDIDSGRMLIHVDEGKNGKDRKAMLSPGLLDLLR 202

Query: 247 ---MTPIGKETFFINNDK-QKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
              +    +   F    K   ++  Q +  F +    AG+NK  + H +R   AT   +A
Sbjct: 203 EYWLEARPEGWLFPGKPKINPLSLRQLNRAFTSAKHMAGINKPATLHTLRHSFATHLLEA 262

Query: 301 GATAHELMATYGWKTVDQAETYTKGA 326
           G     +    G   +     YT  A
Sbjct: 263 GTDVRVIQVLLGHSKLSTTARYTHVA 288


>gi|291528623|emb|CBK94209.1| Site-specific recombinase XerD [Eubacterium rectale M104/1]
          Length = 282

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 34/268 (12%), Positives = 93/268 (34%), Gaps = 17/268 (6%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---TPSSA 133
           +  ++    +L   S   +++Y    +         ++T + +R  + ++K      ++ 
Sbjct: 8   QLEEAGKIRNLKERSINCYKNYVSYFLNYMEKHP-EELTCQDVRDFLLAKKDDGLKATTL 66

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
             + +++R  ++  +   +      ++V R   + +     + +++ +      +  + +
Sbjct: 67  NLYNSAIRFFYRNVLHVLWDD----ITVPRMIIEHKLPTILSTDEIDRLLDATDD-LKYK 121

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL------PDGFMKLLAM 247
             F  +  SG+R S+        +      I  + T   +               +    
Sbjct: 122 AMFATMYSSGMRVSEVIHLHYDDISRTNMQIHVRDTKNRMDRYTILSERNLALLTEYWFQ 181

Query: 248 TPIGKETFFINND-KQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAH 305
               K   F N    Q +  +      +  A+ AG++  + H +R   AT   + G    
Sbjct: 182 KGRPKGILFPNQFTGQYLTVSTLEQVIRRSASAAGLSGVTPHCLRHSFATHLMEQGVEQR 241

Query: 306 ELMATYGWKTVDQAETYTKGADRIRLGI 333
            + A  G +     E Y   +++  +GI
Sbjct: 242 NIQALLGHRDPKSTEVYLHVSNKSLMGI 269


>gi|325267781|ref|ZP_08134431.1| site-specific tyrosine recombinase XerC [Kingella denitrificans
           ATCC 33394]
 gi|324980662|gb|EGC16324.1| site-specific tyrosine recombinase XerC [Kingella denitrificans
           ATCC 33394]
          Length = 357

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 44/293 (15%), Positives = 92/293 (31%), Gaps = 18/293 (6%)

Query: 49  SALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD 108
           +A T   P       P    +     + +Y +     + + ++  +++    Q+     +
Sbjct: 38  AAKTVKMPFMPIQKQPASMSSPFFAHLPDYLREQTQLNRSAHTLAAYQRDLWQLQTLLPE 97

Query: 109 F--DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
              +            +  R    S+  + LT  R   K+  ++E    +P   ++ P++
Sbjct: 98  ACENPTAQDFSAALKTLSQRGLNASTLARKLTVWRQYAKFVQQKEAADASPAERLKAPRQ 157

Query: 167 KTEGIRPWTKEDMQ-----QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QN 219
                R   +E +Q       ++  +   +     E    SGLR S+ C   +  +    
Sbjct: 158 AQRLPRAIERETLQYLLDQAPEAGDALAVRDHAVAELFYGSGLRLSELCALNLHDIWLDE 217

Query: 220 NIFSIKTQKTGTIITVELPD----GFMKLLAMTPIGKE--TFFINNDKQKMNATQFSIWF 273
              S+   K G    V L           LA           F     +++   Q +   
Sbjct: 218 GWVSVH-GKGGKQRHVPLTQHSIAALRAWLARRTTADSESALFTGRYGKRLTTRQIAKRL 276

Query: 274 KAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +  A + G     + H +R   A     A      +    G  ++   + YTK
Sbjct: 277 QHWAAERGSLQTITPHMLRHSFAGHLLQASHDLRAVQDLLGHSSLSSTQIYTK 329


>gi|85708628|ref|ZP_01039694.1| tyrosine recombinase [Erythrobacter sp. NAP1]
 gi|85690162|gb|EAQ30165.1| tyrosine recombinase [Erythrobacter sp. NAP1]
          Length = 265

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 46/235 (19%), Positives = 79/235 (33%), Gaps = 21/235 (8%)

Query: 110 DYRKITTKHIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINP-CLSVERPK 165
           D   +    +RS + SR+      SSA + L++++ L  +A R E    +P    +  P+
Sbjct: 12  DVAAVEAHDLRSHLASRRAQGLSNSSAARELSALKALIAYA-RSEAGDPDPSAPRLCGPR 70

Query: 166 RKTEGIRPWTKEDMQQFKSFWS-------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218
            K    RP T ++                 G++ R     +  SGLR +++     +   
Sbjct: 71  LKKGLPRPVTPDEAVNIADLIDGTASEDWIGARDRAVLLLMYGSGLRIAEALSLEGRDAV 130

Query: 219 NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG-------KETFFINNDKQKMNATQFSI 271
                  T K G    V +     + +A             E  F       ++A     
Sbjct: 131 LGETLQVTGKGGKQRLVPILPITREAVAEYANACPWPLPTHEPLFRGAKGGPLSAGMVQK 190

Query: 272 WFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
                    G+    + H +R   AT    AGA    L    G  ++   + YTK
Sbjct: 191 AMARARRALGLPDTATPHALRHSFATHLLGAGADLRSLQELLGHASLGSTQIYTK 245


>gi|213857670|ref|ZP_03384641.1| shufflon-specific DNA recombinase [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
          Length = 365

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 42/279 (15%), Positives = 92/279 (32%), Gaps = 23/279 (8%)

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121
              R K  +L   + +Y  +          +  F            +    +ITT  I S
Sbjct: 3   RPQRIKKMSLSKALDKYYATVSVHKRGH--QQEFYRVRVIQRHPLAEKMMDEITTVDIAS 60

Query: 122 GVESRKHTPSSAIQF----------LTSMRVLFKWA-VRQEYVAINPCLSVERPKRKTEG 170
             + R    ++              L  +  L+  A V       NP   V +PK     
Sbjct: 61  YRDDRLSQVNTRTGRCISGNTVRLELALLSSLYNLASVEWGTCRTNPVEMVRKPKISGGR 120

Query: 171 IRPWTKEDMQQFKSFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQ 227
            R  T ++ ++   ++ E +      F   + + +R  +      +H+     +  +   
Sbjct: 121 DRRLTSQEERRLSRYFQEQNPALHAIFHLAIETAMRQGEILSLRWEHIDLQHGVAHLPMT 180

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSA 286
           K G+   V L      LL        T  ++ +    +++ F   ++    +  + +   
Sbjct: 181 KNGSSRDVPLSRKARHLL-----QGMTVALSGNVFHYSSSGFKSAWRVALQRLNIVDLHF 235

Query: 287 HGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTK 324
           H +R  + +   + G     E+ A  G ++++  + YT 
Sbjct: 236 HDLRHEAISRLFELGTLNVMEVAAISGHRSLNMLKRYTH 274


>gi|167464469|ref|ZP_02329558.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family protein [Paenibacillus larvae subsp. larvae
           BRL-230010]
          Length = 379

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 57/340 (16%), Positives = 115/340 (33%), Gaps = 41/340 (12%)

Query: 23  YYFR-----KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT--TLKWLI 75
           +Y+R        G+R +        F     +       + E +N    +PT  T+   +
Sbjct: 25  WYYRYDITDPKTGKRKQKEVGG---FRTKEEAQEAAVRIQSELLNGTYVEPTKLTVGEFL 81

Query: 76  SEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKH--TPSS 132
            ++ ++     +A N+     ++  + I    G      +T  H++    S +       
Sbjct: 82  LDFVENTLKYEVAPNTYEQRMTFVKNHIQPNIGSLRLTDLTPNHVQKFYNSLREHYGAGY 141

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK--RKTEGIRPWTKEDMQQFKSFWSEGS 190
                  +   F  AV+   ++ NP   V++P   RK   ++ WT ED ++F  +  +G 
Sbjct: 142 VQNIGNLLSKAFTQAVKWNMISRNPIPLVKKPSLSRKNTKMKTWTVEDQRKFLDYAKDGP 201

Query: 191 QPR-LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-----------------GTI 232
           +   + F   L SG+R  +        +      +  ++T                   I
Sbjct: 202 KLYYVIFLLALTSGMRKGELLGLIWDDVDTKKGIVSIKRTIVYAQRKLYLKDMPKTESAI 261

Query: 233 ITVELPDG----FMKLLAMTPIGKETFFINNDKQK--MNATQFSIWFKAKATKAGVNK-S 285
            T++LP+       +     P  +      + K K  +               AGV + +
Sbjct: 262 RTIQLPEPTIKVMKQWKLECPANELNLLFPSPKTKGILYPNSLDKQLAKTIKGAGVPEIT 321

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
            HG+R   AT    +      +    G  T+    +TY+ 
Sbjct: 322 MHGLRHTFATTLLGSNVNPKIVQEMLGHATIKTTMDTYSH 361


>gi|152983145|ref|YP_001352184.1| phage integrase family site specific recombinase [Janthinobacterium
           sp. Marseille]
 gi|151283222|gb|ABR91632.1| site-specific recombinase, phage integrase family
           [Janthinobacterium sp. Marseille]
          Length = 328

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 39/267 (14%), Positives = 81/267 (30%), Gaps = 21/267 (7%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           T+   +  Y +      L    +                    ++    +    + R   
Sbjct: 60  TITAALDRYAR--EVTPLKKGWKQELVRLRRWQSNPLAQLTMPQLRAAELAKYRDQRLSD 117

Query: 130 PSSAIQF---LTSMRVLFKWAV-RQEY-VAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
              A      L  +  +++ A+      V INP   + +PK      R  T+ +      
Sbjct: 118 GLGANTVRLELALISHVYEVAIKDWGLEVLINPVRIIRKPKLPRGRERRLTEGEEDLLLE 177

Query: 185 FWSE--GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN--IFSIKTQKTGTIITVELPDG 240
           +  +   +  RL     L + +R  +      +++  +  +  +   K G    V L   
Sbjct: 178 YCKKKGAALLRLVIILALETAMRRGEIASLHTENIDLDSRLIFLDQTKNGDKRKVPLSRR 237

Query: 241 FMKLLAMTPIGKETFFINNDKQ--KMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATIS 297
             K L       E +      +   ++    S  F       G+   + H +R  + +  
Sbjct: 238 AQKEL-------ENYLCGKHGELVPLHPDNISGAFSQACKVCGISGLTLHDLRHEATSRL 290

Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324
            + G    E+ A  G KT+   + YT 
Sbjct: 291 FEKGFNMMEVAAITGHKTLTMLKRYTH 317


>gi|224477023|ref|YP_002634629.1| putative integrase [Staphylococcus carnosus subsp. carnosus TM300]
 gi|222421630|emb|CAL28444.1| putative integrase [Staphylococcus carnosus subsp. carnosus TM300]
          Length = 390

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 54/346 (15%), Positives = 112/346 (32%), Gaps = 53/346 (15%)

Query: 48  MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG 107
            + +     +     +P     T  ++  E+          V+S  + E          G
Sbjct: 44  HAEMVERQIRNNEYIAP--SAHTFSYIADEFINHYR-KDAKVSSVRAREKAIKHAKVAFG 100

Query: 108 DFDYRKITTKHIRSGVESRKHTPSSA--IQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165
           D   + IT    +  V+      S       + S  ++FK+A+    +   P   ++RPK
Sbjct: 101 DKAIQSITKHQYQQFVDDISTRFSKNYVDSIVASTNLVFKYALDMNLLKKLPNEGIKRPK 160

Query: 166 RK---TEGIRP------WTKEDMQQFKSFWSEGSQPRLAFEF---LLYSGLRCSDSCRAG 213
           +K    E            KE++ +F +       P  +FE    + YSG R  +     
Sbjct: 161 QKVTVEELEHTELKQKFLEKEELFEFLNVAKNDHPPLNSFELFTLMAYSGCRAGEILALK 220

Query: 214 VQHLQNNIFSIKTQKTG--------------------------TIITVELPDGFM----- 242
              +  + ++I   KT                               ++L   +      
Sbjct: 221 WSDVDFDNYTINITKTYYNPNNNKKNYQILTPKTNASIGKLSIDPHVIKLLKDYKVNVQD 280

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
           K      +     F +N+   +   + S W ++  +K  ++K  + H  R     +  +A
Sbjct: 281 KWKNELYVDNNFVFTDNNGYPLVIKKLSQWIQSIMSKTNIDKNITTHSFRYTHCALLIEA 340

Query: 301 GATAHELMATYGWKTVDQAE-TYTKGADRIRLGIKNSRRISSVVDS 345
           G    E+      K ++     Y K  D  +     S++ S ++++
Sbjct: 341 GVHIKEIQERLRHKDINTTMNIYAKITDSYKK--DASQKFSQLMEN 384


>gi|120603607|ref|YP_968007.1| phage integrase family protein [Desulfovibrio vulgaris DP4]
 gi|120563836|gb|ABM29580.1| phage integrase family protein [Desulfovibrio vulgaris DP4]
          Length = 417

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 54/354 (15%), Positives = 112/354 (31%), Gaps = 33/354 (9%)

Query: 4   SLRLPPFVTKERTRHG-----KIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTP 56
             + P    +E  R G     ++ Y  Y R G     ++         PA  + +     
Sbjct: 40  KTQYPGVYYREAQRIGGTGTERVYYALYKRDGRLIETKIGRQFSDDLTPAKAALIRAQLI 99

Query: 57  KREYINSPR-------KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF 109
           +                 P T+  L  EY++        +  +  FE +   + +     
Sbjct: 100 EGRRSTRKELRQAEMDNAPWTILTLWEEYKRRKPNLKGIITDQNRFEVHLRHL-QNMKPE 158

Query: 110 DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA-INPCLSVERPKRKT 168
           +       +++  + +    P +    +  +R +  +  ++  +     C   E P    
Sbjct: 159 EITTTLVDNLQLSLANSGKKPGTIKNVIELLRRIISFGEKKGLITPSQICAHFEMPILNN 218

Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSI 224
           +     T E +    +        +        LY+G+R  +      +H+       +I
Sbjct: 219 QKTEDLTPEQLNNLIAAIESTKHKKAGQMMLLALYTGMRRGEIFNLKWEHIDWHRGFINI 278

Query: 225 KTQ------KTGTIITVELPDGFMKLLAMTPIGKETF-FINNDKQKMNATQFSIWFKAKA 277
             +      K+G    + L D   +LL   P G+  + F      ++          A  
Sbjct: 279 VGRDDGLGAKSGQCERIPLNDLARQLLLSVPKGQSRYVFPGKSGGRLV--DIRKQADALK 336

Query: 278 TKAGVNKS---AHGVRKFSATISADAGA-TAHELMATYGWKTVDQAETYTKGAD 327
            +AG+  S    HG+R   A++ A  G  + +EL      K+    + Y    D
Sbjct: 337 KEAGLPDSFRPFHGLRHVYASLLASTGKVSMYELQKLMTHKSAAMTQRYAHLRD 390


>gi|42526718|ref|NP_971816.1| phage integrase family site specific recombinase [Treponema
           denticola ATCC 35405]
 gi|81412439|sp|Q73NE4|XERC_TREDE RecName: Full=Tyrosine recombinase xerC
 gi|41817033|gb|AAS11727.1| site-specific recombinase, phage integrase family [Treponema
           denticola ATCC 35405]
          Length = 305

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 47/284 (16%), Positives = 94/284 (33%), Gaps = 36/284 (12%)

Query: 76  SEYRK-SAHWGSLAVNSRISFES---YFDQIIRKSGDFDYRKITTKHIRSGVESRKHT-- 129
             Y   SA        +  S+++    F++ +++  D +  ++    IR  +        
Sbjct: 6   ESYLTYSAGVRQFTKATIDSYKNDLIIFEEWLKEL-DLNIFELKASDIRIFIAELADKKI 64

Query: 130 -PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
            P+S  + ++++R  +K+A+R     +NP  SV   K   +       +  Q+F    S 
Sbjct: 65  APASINRMMSTLRGFYKYALRFNLTKMNPISSVRNLKLAQKLPVFMFPKQAQEFCRLPSN 124

Query: 189 G-----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPDGFM 242
                 ++    F  L  +G R S+     ++ L   + ++I   K      V   +   
Sbjct: 125 AGILWETRDAALFASLYSTGCRVSELAGLDIKDLDKTLSYAIVFGKGKKERKVFFAEFAK 184

Query: 243 KLLA--------------------MTPIGKETFFINNDKQKMNATQFSIWFKAKATK--A 280
           + L                          ++T FIN   Q + +                
Sbjct: 185 EYLREYLKERSDLVEKFKGQVQKDGKGKIRDTLFINQKAQPLTSRGIRYIIDRYVELSPE 244

Query: 281 GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             + S H  R   A+     GA    +    G ++V   + YT 
Sbjct: 245 LKHLSPHAFRHSFASTLITRGADIRVVQELLGHESVSTTQRYTH 288


>gi|323139352|ref|ZP_08074404.1| integrase family protein [Methylocystis sp. ATCC 49242]
 gi|322395418|gb|EFX97967.1| integrase family protein [Methylocystis sp. ATCC 49242]
          Length = 317

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 51/273 (18%), Positives = 87/273 (31%), Gaps = 30/273 (10%)

Query: 89  VNSRISFESY---FDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVL 143
            ++R ++      F     + G      I   HI + VE+  R H+  +A Q L ++R+L
Sbjct: 37  PHTRRAYGRAIGDFLAWCEQRGLASIVDIEPLHIGAYVEAMTRSHSAPTAKQRLAAIRML 96

Query: 144 FKWAVRQEYVAINPCLSVERPKR--KTEGIRPWTKEDMQQFKS----FWSEGSQPRLAFE 197
           F W V  + V  NP  SV  PK   K          + +            G + R    
Sbjct: 97  FDWLVTGQIVPTNPAASVRGPKHVVKVGKTPVLDPAEARALLDSIDVTAPVGLRDRALIG 156

Query: 198 FLLYSGLRCSDSCRAGVQH--LQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKE- 253
            ++YS  R   +    V+   +QN    ++  +K G    +         L     G   
Sbjct: 157 LMIYSFARVGAALAMKVEDVYVQNRRLWVRLHEKGGKRHEMPCHHNLEAYLHAYIDGCGL 216

Query: 254 -----TFFINNDKQKMNATQFS--------IWFKAKATKAGVNKSA--HGVRKFSATISA 298
                        +   A  F+           + +A  AG+      H  R    T   
Sbjct: 217 ASDPKAPLFRTIGRGAGALTFTPLPQANAYAMIRRRAVAAGIATKVGNHSFRATGITAYL 276

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
             G T  +  +     +    + Y +  D + L
Sbjct: 277 KNGGTLEKAASMANHASTRTTQLYDRRRDEMSL 309


>gi|300869256|ref|ZP_07113849.1| Integrase family protein [Oscillatoria sp. PCC 6506]
 gi|300332747|emb|CBN59047.1| Integrase family protein [Oscillatoria sp. PCC 6506]
          Length = 281

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 44/253 (17%), Positives = 92/253 (36%), Gaps = 14/253 (5%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSSAIQFLTSMRVL 143
              + N+  S+  +  +++    +     +T   I++   +  + +  S    + +++ L
Sbjct: 19  HGRSKNTAGSYRLHTSRLLSFVDNKPLSSVTLADIQAWELTLSNLSSGSQRTAIFAIKSL 78

Query: 144 FKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202
             +  +   + +N  L V  R  + T   R  ++ ++Q   +  ++  + R+    L   
Sbjct: 79  LSFGHKLGVLPVNVGLLVRSRGVKDTLSERILSEAEVQAMIASETDP-RNRVMLRLLYSG 137

Query: 203 GLRCSDSCRAGVQHLQ---NNIFSIKTQKTGTIITVELPDG-----FMKLLAMTPIGKET 254
           GLR S+ C    + L+        +     G    V L         ++L    P     
Sbjct: 138 GLRVSELCGLKWKDLKERPGAGGQVTIFGKGNKTRVVLLPPGIWGGLIQLGPGQP-DDPV 196

Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYG 312
           F        ++ +      KA A +AG+    S H +R   A+ S D GA  H +  T G
Sbjct: 197 FHSYLGGGHLHRSHLWRIVKAAAIRAGISDKVSPHWLRHAHASHSLDRGAPIHLVQQTLG 256

Query: 313 WKTVDQAETYTKG 325
             ++     Y   
Sbjct: 257 HSSLATITRYLHA 269


>gi|118466667|ref|YP_879975.1| site-specific recombinase, phage integrase family protein
           [Mycobacterium avium 104]
 gi|118167954|gb|ABK68851.1| site-specific recombinase, phage integrase family protein
           [Mycobacterium avium 104]
          Length = 370

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 50/318 (15%), Positives = 102/318 (32%), Gaps = 52/318 (16%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV------ 123
           T++    ++    H   +   +R ++      +  + GD   +++T  H+   V      
Sbjct: 53  TVEQACRDWLAGMH--DIEPTTRAAYTHALKPLRERHGDMAVQQLTKSHLDQLVTDLTTG 110

Query: 124 ----ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
               + R  T +S    L  +  +    VRQ  +A +    V+R KR    +  +T+E++
Sbjct: 111 KLDGQKRAWTANSINPMLNLVSRVLADLVRQGALARDVAAFVKRLKRPESKLTTFTEEEV 170

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-------------------NN 220
           +Q      E  +   A+   L  GLR  + C      +Q                     
Sbjct: 171 RQLLK-HVENDRLGHAWHLALA-GLRRGEICGLEWADVQLDDDRDAGTLTVAHNRVSVGG 228

Query: 221 IFSIKTQKT-GTIITVELPDGFMKLLAMTPI---------------GKETFFINNDKQKM 264
               K  KT  +  T+ L     ++L                          +++  +  
Sbjct: 229 RVHEKAPKTVRSARTLPLTPTLARMLKRAKALQAAERLRLGPHYLGDGVRVVVDDSGRPY 288

Query: 265 NATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETY 322
           +    S +++     A V +   H  R   A++    G     + A  G         TY
Sbjct: 289 HPDTLSDFWRELCGDAKVRRIRLHDARHSCASLMHAQGVPIAVISAWLGHADPAFTMRTY 348

Query: 323 TKGA-DRIRLGIKNSRRI 339
                D + L   + +++
Sbjct: 349 VHAENDALNLAAASLQKV 366


>gi|125974940|ref|YP_001038850.1| phage integrase [Clostridium thermocellum ATCC 27405]
 gi|125715165|gb|ABN53657.1| phage integrase [Clostridium thermocellum ATCC 27405]
          Length = 370

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 55/311 (17%), Positives = 103/311 (33%), Gaps = 36/311 (11%)

Query: 49  SALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD 108
            AL     K E          T+   ++ +  +    ++A ++   +  +   I    G 
Sbjct: 42  KALADIIAKIEKGEYFEPANMTVAEYLNYWLDTYPKNNVAPSTYRRYTEFAAHIKTHIGG 101

Query: 109 FDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL---FKWAVRQEYVAINPCLSVERPK 165
               K+   HI+S   S      S    L   R+L    K AV  + +  NP  +V  P+
Sbjct: 102 IMMPKLKPAHIQSFYSSLLEKNLSKSTVLKIHRMLHLALKHAVNWQIIISNPTDAVTPPR 161

Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ------- 218
                +R W  E  ++F    +E +   +     L +G+R  + C    +++        
Sbjct: 162 PDKVEMRVWDVETAKKFLDDIAE-TPIYIPVLLALQTGMRAGEICGLKWENIDLPRGFLM 220

Query: 219 --------NNIFSIKTQKT-GTIITVELPD----GFMK---------LLAMTPIGKETFF 256
                   N + ++K  KT  ++ T+ L D       +         LL  +    + F 
Sbjct: 221 VKYALQRINGVLTLKEPKTAKSMRTIALMDYTVQALKEHKRKQNKTKLLMGSAYNDQDFV 280

Query: 257 IN-NDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWK 314
              +D +  +       F       G  K   H +R   AT+    G     +    G  
Sbjct: 281 CAWDDGRPYDPHYLGQKFTKLIKLLGYPKIRFHDLRHTHATMLLQQGINPKIVSERLGHS 340

Query: 315 TVDQA-ETYTK 324
            +    +TY+ 
Sbjct: 341 QISVTLDTYSH 351


>gi|310819252|ref|YP_003951610.1| phage integrase family protein [Stigmatella aurantiaca DW4/3-1]
 gi|309392324|gb|ADO69783.1| Phage integrase family protein [Stigmatella aurantiaca DW4/3-1]
          Length = 395

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 57/379 (15%), Positives = 102/379 (26%), Gaps = 62/379 (16%)

Query: 21  IIYYFRKGHGRRIRLPYPHEST-FIPAY-----MSALTGSTPKREYINSPRKKPTTLKWL 74
           + Y    G   RIR   P  +      Y      + LTG+  K            TL   
Sbjct: 23  VKYQHPSGRVERIRKASPINTRRGAEEYERQIRHALLTGTFGKENGAGRVL----TLGEF 78

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA- 133
           +  +   +   +   +     +   D +I   G+     I    I     + +  PS A 
Sbjct: 79  VPRFLTYSENNNKHSSVVTKRQILDDHLIPAFGNMPLDAIGPAEIEDFKAAMRKKPSGAR 138

Query: 134 ----------------------------IQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165
                                          LT +  L   A  Q  +   P   V+  K
Sbjct: 139 ARKEAPTRAALLKRKGSGAVKLLSLKSINNVLTVLHKLLALAQEQGVLQHVP--RVKLFK 196

Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225
                    + E+ ++  +      + R      L +GLR  +        L      + 
Sbjct: 197 TDKPAFDFLSFEEAERMSNAAEP--EWRTLILVALKTGLRLGELIGLQWADLDLQRGKLN 254

Query: 226 TQ-----------KTGTIITVELPDGFMKLLAM-TPIGKETFFINNDKQKMNATQFSIWF 273
            +           K G   TV+LP   ++ L     +     F   D + + A       
Sbjct: 255 VRRTIWRGVVGLPKGGRERTVDLPTSAVEALKAHRHLCGPYVFCQTDGRPLTAGMTKHPL 314

Query: 274 KAKATKAGVNK-----SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
                +AGV++       H +R    +  A  G     +    G  T++    Y   +  
Sbjct: 315 LRALRRAGVSRPEGSIGWHDLRHTYGSHLAMRGVALKVIQELMGHATIEMTMRYAHLSPE 374

Query: 329 IRLGIKNSRRISSVVDSDD 347
            R      + +   +    
Sbjct: 375 AR--ESAVQELDRPIPQPR 391


>gi|52842271|ref|YP_096070.1| prophage dlp12 integrase [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
 gi|52629382|gb|AAU28123.1| Prophage dlp12 integrase [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
          Length = 334

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 47/327 (14%), Positives = 106/327 (32%), Gaps = 20/327 (6%)

Query: 26  RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG 85
           R     R ++       F   ++  L       ++   P++K  +    +  + + +   
Sbjct: 20  RIRRSTRTKVKQ-QAQQFHDNFLQDLW----SNKHTKLPQQK--SWVDAVVRWLEESA-H 71

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFK 145
             ++ +     ++ D  + +    +      + I    E    TP++  + L  +R +  
Sbjct: 72  KRSLVTDKFHLAFLDPYLGQKTLDEINAELIEFIAQEKERTNVTPTTVNRMLEIIRAILN 131

Query: 146 WA-VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGL 204
            A    +++   P       K + + IR  ++    +         +   AF     +GL
Sbjct: 132 KAHKEWQWINTMP--LFRMRKVENKRIRWLSRGQANKLIQELPNHLKDMAAFTLA--TGL 187

Query: 205 RCSDSCRAGVQHLQN----NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINND 260
           R S+  +     +       +      KT   I V L    + ++        TF     
Sbjct: 188 RQSNVTQLQWSEVDLIRKHALIHPDQSKTKKAIPVPLNSQAIVIIEKQVGLHPTFVFTYF 247

Query: 261 KQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
            + +       W K    +AG+ +   H +R   A+     G +  EL    GW   +  
Sbjct: 248 GKPVTRCNNHAWQK-ALIRAGIKDFRWHDLRHTWASWHVQNGTSLQELQQLGGWSEYEMV 306

Query: 320 ETYTK-GADRIRLGIKNSRRISSVVDS 345
             Y    +D +++  +   + S    S
Sbjct: 307 LRYAHLSSDHLKVAAERITKNSGTFSS 333


>gi|283769290|ref|ZP_06342191.1| site-specific recombinase, phage integrase family [Bulleidia
           extructa W1219]
 gi|283104100|gb|EFC05482.1| site-specific recombinase, phage integrase family [Bulleidia
           extructa W1219]
          Length = 327

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 38/277 (13%), Positives = 96/277 (34%), Gaps = 14/277 (5%)

Query: 59  EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH 118
           E I   +++  + +  +  +  +      +  S   +++  + ++ +    D + I T  
Sbjct: 37  EVIEKQQQEKNSEQNFVELFLSAKRIEGCSEKSLKYYKATIEAMLDEL-KKDVKHIVTDD 95

Query: 119 IRSGV----ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
           IR  +    + +K +  +       +   F W   ++Y+  +P   + + K  T     +
Sbjct: 96  IRGYLTDYQKKKKSSKVTIDNIRRILSSFFSWLEDEDYILKSPVRRIHKVKTGTNIKETY 155

Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234
           + E ++  +   +E  +     + L  +G+R  +        +  N         G+   
Sbjct: 156 SDEALELMRDNCTE-LRDLAIIDMLASTGMRVGEMVLLNRNDIDFNERECIVFGKGSKER 214

Query: 235 VELPDG-----FMKLLAMTPIGKETFFIN--NDKQKMNATQFSIWFKAKATKAGVNK-SA 286
           V   D          L          F++  +  +++      +  +    + G+ K   
Sbjct: 215 VVYFDARTKIHLQNYLGSRTDDNPALFVSLKSPHERLKIGGVEVRLREFGKQLGLQKVHP 274

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           H  R+  AT++ D G    +L    G + +D    Y 
Sbjct: 275 HKFRRTLATMAIDKGMPIEQLQQLLGHRKIDTTLQYA 311


>gi|29345643|ref|NP_809146.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
 gi|29337535|gb|AAO75340.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
          Length = 373

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 49/231 (21%), Positives = 90/231 (38%), Gaps = 13/231 (5%)

Query: 110 DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
            +R+      +   ++RK   +SA  + ++ R     A R   +  NP   +ER +    
Sbjct: 139 RFREYLLTAPQGLHKNRKLHINSAANYWSTFRASIHTAYRDRKIKENPNGFLERIETIPT 198

Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIK 225
                +++++ +  S        + AF F   + LR SD  +   + +     + +  + 
Sbjct: 199 DKEHLSQDEVIRLASTPCSAPALKRAFLFSCLTALRKSDIKKLTWEEIQPYGSDGVMYVT 258

Query: 226 T--QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
           T  QKT  I+   + +  ++L+  +P  +   F  + K  M       W K     AG+ 
Sbjct: 259 TRMQKTKDIVHNPISEEALELIGYSPDKRGKVFP-DFKDSMTQAPLKNWLKD----AGIT 313

Query: 284 K--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           K  S H  R   A +  DAG +   +    G K V   E Y K +D  +  
Sbjct: 314 KHISYHCSRHSFACLQLDAGTSIAVVQRYLGHKNVATTEVYAKISDAQKRA 364


>gi|218442312|ref|YP_002380638.1| integrase [Cyanothece sp. PCC 7424]
 gi|218175416|gb|ACK74145.1| integrase family protein [Cyanothece sp. PCC 7424]
          Length = 313

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 39/253 (15%), Positives = 88/253 (34%), Gaps = 25/253 (9%)

Query: 109 FDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVA-INPCLSVERPK 165
            ++ ++  +H  +     K     ++A + L +++ +   AVR + +   +   +V+ PK
Sbjct: 59  LNWARLRYQHTAAIRAIFKERYCATTANKMLCALKRVLAEAVRLDLMEATDYAKAVDFPK 118

Query: 166 RKTEGI---RPWTKEDMQQFKSFW-----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217
            K +     R  + +++              G +       L  +GLR ++     ++  
Sbjct: 119 IKGKKKLRGRALSGDEISALIEVCRQDESPLGVRDAAIIAILRGTGLRRAELAALELRDF 178

Query: 218 --QNNIFSIKTQKTGTIITVELP----DGFMKLLAMTPIGKETFFI------NNDKQKMN 265
                +  ++  K     TV LP          +A+                  + + ++
Sbjct: 179 IADGGVLEVREGKGDKDRTVYLPHNVISYVNDWIAVRGDAPGALLCPIRKGGRIEGRHLH 238

Query: 266 ATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY-T 323
                   K +AT+AGV   S H  R+   +   DAG     +    G  + +    Y  
Sbjct: 239 PDAVLKIVKKRATQAGVESFSPHDFRRTFCSDLLDAGVDIVTVQKLAGHASPETTAKYDR 298

Query: 324 KGADRIRLGIKNS 336
           +G +  R  ++  
Sbjct: 299 RGEETKRKAVQML 311


>gi|188575133|ref|YP_001912062.1| site-specific tyrosine recombinase XerC [Xanthomonas oryzae pv.
           oryzae PXO99A]
 gi|188519585|gb|ACD57530.1| tyrosine recombinase XerC [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 305

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 39/267 (14%), Positives = 90/267 (33%), Gaps = 27/267 (10%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDF-------------DYRKITTKHIRSGV---ESRKH 128
             ++ ++  ++      ++  +G+              D  ++ + H+R  V     R  
Sbjct: 15  RQVSAHTLDAYRRDLAALVAWTGERNAEDGAQQTATPVDSAQLDSAHLRQFVAAEHRRGL 74

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF--- 185
           +P S  + L++ R  + W ++   +A +P  ++  PK + +  +    ++  +       
Sbjct: 75  SPKSLQRRLSACRSYYAWLLKHGRIAASPAAALRAPKAQRKLPQVLDADEAVRLVEVPTD 134

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKL 244
              G + R   E    SGLR S+ C    + L  ++   +   K      V +    +  
Sbjct: 135 APLGLRDRALLELFYSSGLRLSELCALRWRDLDLDSGLVMVLGKGSKQRLVPVGSHAIAA 194

Query: 245 LAM-----TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS 297
           L               F       ++     I  K  A + G+  +   H +R   A+  
Sbjct: 195 LRQWRRDSGASADAHVFPGRTGGAISQRAVQIRIKQLAVRQGMFKDVHPHMLRHSFASHI 254

Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324
            ++      +    G   +   + YT 
Sbjct: 255 LESSGDLRGVQELLGHSDIATTQIYTH 281


>gi|52079825|ref|YP_078616.1| lambda integrase-like protein(phage related) [Bacillus
           licheniformis ATCC 14580]
 gi|52785195|ref|YP_091024.1| hypothetical protein BLi01428 [Bacillus licheniformis ATCC 14580]
 gi|52003036|gb|AAU22978.1| Lambda integrase-like protein(phage related) [Bacillus
           licheniformis ATCC 14580]
 gi|52347697|gb|AAU40331.1| putative protein [Bacillus licheniformis ATCC 14580]
          Length = 379

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 51/296 (17%), Positives = 102/296 (34%), Gaps = 42/296 (14%)

Query: 70  TLKWLISEYRK-SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128
           T + +  E+    +     +   R    ++   I+   G    + IT  + +  +     
Sbjct: 66  TFEDVFKEWWDVHSKTIKRSTRYRK-LSNFKKHILPHFGKLKIKDITRAYCQKVINLIAQ 124

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT-------EGIRPWTKEDMQQ 181
              S         ++FK+A+R EY+  NP   V  PK++        E    W K++++ 
Sbjct: 125 DIDSVQNVKIQANLVFKYALRMEYITKNPMEFVVIPKKEENFLSQEEEKRNFWEKDEIKT 184

Query: 182 F--KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----------------NNIFS 223
           F  K+      Q  + F  L+++G+R  +      + +                      
Sbjct: 185 FLEKAHSQLAPQDYVMFYVLIFTGMRKGELIALEWKDVDLKEKTINIKQTMFFENGKEVI 244

Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIG-------------KETFFINNDKQKMNATQFS 270
             T+K  +   + + D   ++L                    +   I  D + +     +
Sbjct: 245 QTTKKYHSKRIITIDDQTAQILKKWRTQQKEMLLSNGITSEAKYVLIRGDMRPLRLAYPN 304

Query: 271 IWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTK 324
                  TK  +++ + HG R   A+I  +AGA+  E+ A  G K +      YT 
Sbjct: 305 DLLNRMITKNKLHRITIHGFRHSHASILFEAGASIKEVQARLGHKEIQTTMNIYTH 360


>gi|310825725|ref|YP_003958082.1| phage integrase family site specific recombinase [Eubacterium
           limosum KIST612]
 gi|308737459|gb|ADO35119.1| phage integrase family site specific recombinase [Eubacterium
           limosum KIST612]
          Length = 412

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 52/307 (16%), Positives = 99/307 (32%), Gaps = 46/307 (14%)

Query: 69  TTLKWLISEYRK-SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV---- 123
           TTL+  + ++ +    +   A +        +  I+ + GDF    +T   ++  +    
Sbjct: 95  TTLRQCLVQWLEEHKKFSVKASSYTRYCSIVYKHIVPQLGDFPVADVTAAVVQDYIHYLR 154

Query: 124 -ESRKHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
            ++ KH    PS+    L  +   F+  +  E V  NPC +V  P  + +      + + 
Sbjct: 155 TDANKHKGLAPSTIKIHLVLLSSFFEKMIELEMVQNNPCEAVRIPPSQKKKPNYLKQNEY 214

Query: 180 QQFKSFWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNN--IFSIK---------- 225
           Q+ +    +    + A   LL   +G+R  +        +        ++          
Sbjct: 215 QKLEKVLEDKICDKRARAILLALKTGIRLGELAALRWTDIDLQSKTIHVRHSIQRVKAKS 274

Query: 226 TQKTGTII------------TVELPDGFMKLLA---------MTPIGKETFFINNDKQKM 264
             K  T I             + + DG   LL               +   F N     +
Sbjct: 275 PGKNKTEIVFGQTKSVCSQRDIPMNDGIYTLLYSYQKVLKKSGIFTEESFVFSNRQGSYL 334

Query: 265 NATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETY 322
           +   +  +F     KAG+   + H +R   ATI+A        L    G  T     + Y
Sbjct: 335 DPRAYQNYFSKLLKKAGIRCVNFHALRHTFATIAASKNMQISTLSRILGHSTPTITLQIY 394

Query: 323 TKGADRI 329
               D  
Sbjct: 395 VHAVDEQ 401


>gi|148360267|ref|YP_001251474.1| integrase [Legionella pneumophila str. Corby]
 gi|296106689|ref|YP_003618389.1| phage integrase-like protein [Legionella pneumophila 2300/99 Alcoy]
 gi|148282040|gb|ABQ56128.1| integrase, phage related [Legionella pneumophila str. Corby]
 gi|295648590|gb|ADG24437.1| phage integrase-like protein [Legionella pneumophila 2300/99 Alcoy]
          Length = 393

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 65/361 (18%), Positives = 126/361 (34%), Gaps = 33/361 (9%)

Query: 19  GKIIYYFR---KGHGRRIRL-PYP-HESTFIPAYMSALT-----GSTPKREYINSPRKKP 68
           G   +++R    G  +++ L  YP         Y++        G  P         K+ 
Sbjct: 34  GNKSWFYRFSMNGKRQKMTLGKYPAISLKQAREYLAKAQSLKEQGINPIENTKLEKLKED 93

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--R 126
            T   LI  + ++    +      I ++    +II   GD    K+ TK I   ++   +
Sbjct: 94  NTFSKLIQSWYENYAVKNRKQPRPIKYQ-IDSEIIPLLGDTVLDKLQTKDITIALDKIVQ 152

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV---ERPKRKTEGIRPWTKEDMQQFK 183
           +  P  A + L++++ +  +AV + Y+  NP  ++   +    +    R  + E+++   
Sbjct: 153 RGAPIHANRILSTIKQVLNYAVSRGYIQYNPATNIRSRDIGGIEKPRERVLSPEEIRIIW 212

Query: 184 SFWSEG-----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT----QKTGTIIT 234
            F            RLA + ++ +G+R  +   A                   K G  + 
Sbjct: 213 KFLESDKSQMSESARLAIKVIILTGVRTGEIRLAQWHQFDFEQSLWTIPPEHSKGGITVK 272

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQ---KMNATQFSIWFKAKATKAGVN-KSAHGVR 290
           + L +   KLL        + F+         M+        K   T+ GV   +AH +R
Sbjct: 273 IHLSELTKKLLLQFKEQSVSPFVIPGITIDVPMSKDALPRAIKRIQTRVGVPEWTAHDLR 332

Query: 291 KFSATISADAGA-TAHELMATYGWKTVDQAETYTKGA---DRIRLGIKNSRRISSVVDSD 346
           +  AT   ++       +    G K      TY K      R       +  I+ ++ S 
Sbjct: 333 RTFATQLGESLNIDPVVIEKCLGHKMPRIMATYNKNEMLPQRKEALDAWASHIAKLISSK 392

Query: 347 D 347
           D
Sbjct: 393 D 393


>gi|299132835|ref|ZP_07026030.1| tyrosine recombinase XerD [Afipia sp. 1NLS2]
 gi|298592972|gb|EFI53172.1| tyrosine recombinase XerD [Afipia sp. 1NLS2]
          Length = 319

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 47/281 (16%), Positives = 90/281 (32%), Gaps = 40/281 (14%)

Query: 89  VNSRISFESYFDQIIRKSG----DFDYRKITT-KHIRSGVESRKHTPSSAIQFLTSMRVL 143
            N+  ++ S  + +         DF +      +   + ++ R    SS  + L+SMR L
Sbjct: 25  DNTLNAYRSDLEDLAAFLARAKQDFAHADTQVLRDYLADLDQRGFKSSSVARRLSSMRHL 84

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS-----------QP 192
           F++ + +     +P   +  PKR     +  +  D+ +      E +             
Sbjct: 85  FRFLLNERKRTDDPAAILSGPKRGRALPKVLSIADVDRLLGKAREFADRDQPPLQKVRAM 144

Query: 193 RLA--FEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELP----------- 238
           RL    E L  +GLR S+     +   + +    +   K      V L            
Sbjct: 145 RLWCLLEVLYATGLRVSELVALPLSAARRDARMIVVRGKGDKERLVPLNQSSRDAMAAYL 204

Query: 239 -------DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288
                  +   +     P  K  F  + +   +    F+   K  A  AG++    S H 
Sbjct: 205 AAAGTAKEEKGEKAKSEPASKWLFPSSGESGHLTRQHFARDLKELAVAAGISPRLISPHV 264

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           +R   A+     GA    +    G   +   + YT   +  
Sbjct: 265 LRHAFASHLLHNGADLRIVQTLLGHTDISTTQIYTHVVEER 305


>gi|212694197|ref|ZP_03302325.1| hypothetical protein BACDOR_03723 [Bacteroides dorei DSM 17855]
 gi|212663263|gb|EEB23837.1| hypothetical protein BACDOR_03723 [Bacteroides dorei DSM 17855]
          Length = 229

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 81/226 (35%), Gaps = 16/226 (7%)

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
               ++   ++A   LT ++ +   A     +  N    + R K      +  TKE++ Q
Sbjct: 1   MHNGKRMMGTTANNNLTKLKCILAIAYEDGLLKENIAKKLVRAKAHGNKRQFLTKEELLQ 60

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNI-FSIKTQKTGTIITVE 236
                 +    R A  F   +GLR SD  R   +++           I T+KT T   + 
Sbjct: 61  LSQTPCKSDVLRRAGLFSCLTGLRLSDCIRLQWENIVKLADGGWGMDIITKKTSTAAILP 120

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSA 294
           + +  ++L      G    F     + +  +  +++ K     +G+ K  + H  R   A
Sbjct: 121 ISEEALQL--CGERGTGQVF-----KNLTNSTVALYLKPWIKASGIEKHITFHCFRHTFA 173

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
           T+    G   + +        +   + Y    D ++     + RIS
Sbjct: 174 TLQLAEGTDIYTVSKLLTHSNLATTQVYADVVDELKR--DAAERIS 217


>gi|16763023|ref|NP_458640.1| shufflon-specific DNA recombinase [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|29144508|ref|NP_807850.1| shufflon-specific DNA recombinase [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|213161172|ref|ZP_03346882.1| shufflon-specific DNA recombinase [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213425488|ref|ZP_03358238.1| shufflon-specific DNA recombinase [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|8896036|gb|AAF81219.1|AF247502_14 Rci [Salmonella enterica subsp. enterica serovar Dublin]
 gi|6995991|gb|AAC38070.2| Rci [Salmonella enterica subsp. enterica serovar Typhi str. Ty2]
 gi|16505330|emb|CAD09330.1| shufflon-specific DNA recombinase [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29140146|gb|AAO71710.1| shufflon-specific DNA recombinase [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|32454468|gb|AAP83040.1| Rci site-specific recombinase [Salmonella enterica subsp. enterica
           serovar Paratyphi C]
          Length = 383

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 42/279 (15%), Positives = 92/279 (32%), Gaps = 23/279 (8%)

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121
              R K  +L   + +Y  +          +  F            +    +ITT  I S
Sbjct: 3   RPQRIKKMSLSKALDKYYATVSVHKRGH--QQEFYRVRVIQRHPLAEKMMDEITTVDIAS 60

Query: 122 GVESRKHTPSSAIQF----------LTSMRVLFKWA-VRQEYVAINPCLSVERPKRKTEG 170
             + R    ++              L  +  L+  A V       NP   V +PK     
Sbjct: 61  YRDDRLSQVNTRTGRCISGNTVRLELALLSSLYNLASVEWGTCRTNPVEMVRKPKISGGR 120

Query: 171 IRPWTKEDMQQFKSFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQ 227
            R  T ++ ++   ++ E +      F   + + +R  +      +H+     +  +   
Sbjct: 121 DRRLTSQEERRLSRYFQEQNPALHAIFHLAIETAMRQGEILSLRWEHIDLQHGVAHLPMT 180

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSA 286
           K G+   V L      LL        T  ++ +    +++ F   ++    +  + +   
Sbjct: 181 KNGSSRDVPLSRKARHLL-----QGMTVALSGNVFHYSSSGFKSAWRVALQRLNIVDLHF 235

Query: 287 HGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTK 324
           H +R  + +   + G     E+ A  G ++++  + YT 
Sbjct: 236 HDLRHEAISRLFELGTLNVMEVAAISGHRSLNMLKRYTH 274


>gi|241206644|ref|YP_002977740.1| site-specific tyrosine recombinase XerC [Rhizobium leguminosarum
           bv. trifolii WSM1325]
 gi|240860534|gb|ACS58201.1| integrase family protein [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 311

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 52/276 (18%), Positives = 92/276 (33%), Gaps = 31/276 (11%)

Query: 85  GSLAVNSRISFESYFDQIIRKS-GDF-------DYRKITTKHIRSGVESRKHTPSSAIQF 136
             L+ ++  ++E    Q +    G         D R++ +   R+ + +R+   S A   
Sbjct: 27  RRLSEHTLDAYERDTRQFLTFLTGHLAGPVTLGDIRELRSADFRAFLAARRKQGSGARSL 86

Query: 137 ---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK--------EDMQQFKSF 185
              L  +R L +   ++  V      +V  PK+     +P +         +D Q     
Sbjct: 87  GRNLAGLRSLLRHLEKKGLVNAAGAAAVRSPKQPKSLPKPLSDTQAITVVSDDAQLHDEP 146

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELP----DG 240
           W   ++       L   GLR S++       LQ    +++ T K      V L     D 
Sbjct: 147 W-IAARDAAVMTLLYGCGLRISEALDLTPADLQKGATTLRITGKGNKTRLVPLLSVIFDA 205

Query: 241 FMKLLAMTP---IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSAT 295
             K   + P      E  F      K+ A       +   +  G+    + H +R   AT
Sbjct: 206 VEKYRTLCPYHLEAGEPLFRGARGGKLQAAIIQRTMQKMRSAFGLPETATPHALRHSFAT 265

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
                G     +    G  ++   + YT G D  RL
Sbjct: 266 HLLAGGGDLRTIQELLGHASLSTTQVYT-GVDASRL 300


>gi|254475428|ref|ZP_05088814.1| tyrosine recombinase XerC [Ruegeria sp. R11]
 gi|214029671|gb|EEB70506.1| tyrosine recombinase XerC [Ruegeria sp. R11]
          Length = 305

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 43/266 (16%), Positives = 84/266 (31%), Gaps = 27/266 (10%)

Query: 85  GSLAVNSRISFESYF--------DQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI-- 134
              A N+  ++                   G     +ITT  +R+ + + +   + A   
Sbjct: 22  RDAADNTLTAYRGDVVDFLAFMTQHFGSPQGLGALAEITTGDMRAWMAATRAGGTGARSL 81

Query: 135 -QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS------ 187
            + L++++  + W   ++       LS   PK + +  RP  ++  +             
Sbjct: 82  ARKLSAVKSFYTWLAERQGFEATAVLSARSPKFQKKLPRPLAEDAAKAMIETVEYQSTSD 141

Query: 188 -EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL-- 244
              ++       L   GLR S++                T K G    V +         
Sbjct: 142 WVAARDVAVVTVLYGCGLRISEALGLTGGDAPLPAVLRITGKGGKERIVPVLPAARAAVD 201

Query: 245 --LAMTPIGKET---FFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATIS 297
             L + P  +ET    F       +NA+           + G+  +A  H +R   AT  
Sbjct: 202 RYLDLCPHPQETNAPLFRGVRGGPLNASIIRKAMAQARAQLGLPATATPHALRHSFATHL 261

Query: 298 ADAGATAHELMATYGWKTVDQAETYT 323
            +AG     +    G  ++   + YT
Sbjct: 262 LEAGGDLRAIQELLGHASLSTTQAYT 287


>gi|149922734|ref|ZP_01911160.1| Phage integrase [Plesiocystis pacifica SIR-1]
 gi|149816439|gb|EDM75939.1| Phage integrase [Plesiocystis pacifica SIR-1]
          Length = 374

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 38/253 (15%), Positives = 78/253 (30%), Gaps = 19/253 (7%)

Query: 88  AVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSS--AIQFLTSMRVLF 144
             +   S E +    I+   GD    ++  + +         T  +       T++  L 
Sbjct: 94  KPSHTESIERHLRIHILPAFGDKRLDELEQEDLERFKAKLGETRKNKTINNIQTTLSTLL 153

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG- 203
           K AV  + +   P   ++R +   + +  +  ++    + F ++     +    +L  G 
Sbjct: 154 KAAVAWKVIEEVPVE-IKRLRVVRKKMDFFDFDEFAWLREFAAKAPSDGIDLAIVLLGGD 212

Query: 204 --LRCSDSCRAGVQHLQNNI-----------FSIKTQKTGTIITVELPDGFMKLLAMTPI 250
             LR  +        L                 I T K   I  + +     K L   P 
Sbjct: 213 AGLRAGEIRGLHWDSLDFQRNRLTVERAEWHGHITTPKHDKIRVLPMTQRLNKALRQLPR 272

Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMA 309
             +        + + A       +    +AG+ +K  H +R    +  A  G  A  +  
Sbjct: 273 ECKLVLPQPSGEPLTAGLLDKRLRRVEKRAGLRDKGPHTLRHTFCSHLAMRGIPARVIQQ 332

Query: 310 TYGWKTVDQAETY 322
             G  ++   E Y
Sbjct: 333 LAGHSSLVTTERY 345


>gi|88607829|ref|YP_504822.1| tyrosine recombinase XerC [Anaplasma phagocytophilum HZ]
 gi|88598892|gb|ABD44362.1| tyrosine recombinase XerC [Anaplasma phagocytophilum HZ]
          Length = 319

 Score =  100 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 30/205 (14%), Positives = 67/205 (32%), Gaps = 16/205 (7%)

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF--KSFWSEGSQP 192
           + ++++R  F++  R   +  +    +  P  +    +   K  + +   ++      + 
Sbjct: 92  RAISAIRNFFRYLQRNHGIKNDVVFHIVNPIVRKGLPKVLEKSHVLKMVSENIHWTSRRD 151

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT---- 248
                 L   GLR S++       L+ +   +   K      + +     KLL       
Sbjct: 152 AAIVALLYGCGLRISEAVGLRFGDLEADAVRV-LGKGKKERIIPILPWVQKLLDGYVESC 210

Query: 249 -------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISAD 299
                         F+    + ++ T F+   +A     G+ +S   H +R   AT    
Sbjct: 211 PFHGTGCGNKASYVFLGVRGKVLDRTYFAHRMQALRRNMGLPESTTPHALRHSFATHLFL 270

Query: 300 AGATAHELMATYGWKTVDQAETYTK 324
            GA    +    G + +   + YT 
Sbjct: 271 EGADIRVIQELLGHENLSTTQIYTH 295


>gi|326799802|ref|YP_004317621.1| Tyrosine recombinase xerC [Sphingobacterium sp. 21]
 gi|326550566|gb|ADZ78951.1| Tyrosine recombinase xerC [Sphingobacterium sp. 21]
          Length = 293

 Score =  100 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 40/282 (14%), Positives = 91/282 (32%), Gaps = 25/282 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFD-----QIIRKSGDFDYRKITTKHIRSGVESRK 127
            +  +     +    + ++  ++E          +  +    +      ++  S +    
Sbjct: 2   YVERFMSFLRFEKHYSEHTLKAYEKDVRSYLQFWVAEQISFEEVGHKQLRYYLSILMDSG 61

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              SS  + L+S+R  +K+  R+     NP L V+  K+  +      ++ + Q      
Sbjct: 62  LEASSINRILSSLRTYYKFLQRESLYGANPTLLVKALKKPKKLPVVIQEDKLNQLLDHDH 121

Query: 188 ------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDG 240
                 EG + RL  E L  +G+R ++  +   + +     +I+   K      V +   
Sbjct: 122 IFQDNFEGQRDRLIIELLFGTGMRLTELIQLQEKDIDYYNQTIRILGKRNKERIVPMLPH 181

Query: 241 FMKLLAM---------TPIGKETFFINNDKQKMNATQFSIWFKAKA--TKAGVNKSAHGV 289
              L+                 T  +    ++                  +   KS H +
Sbjct: 182 LKLLIEQYLKLKKIENLDNNSLTLVVTIKGKQAYPKLIYQVVIRYLSLITSQQKKSPHVL 241

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330
           R   AT   + GA  + +    G   +   + YT    +R++
Sbjct: 242 RHSFATALLNKGADLNAIKELLGHANLVATQVYTHNSVERLK 283


>gi|322384983|ref|ZP_08058635.1| phage integrase-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321150178|gb|EFX43689.1| phage integrase-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 404

 Score =  100 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 57/340 (16%), Positives = 115/340 (33%), Gaps = 41/340 (12%)

Query: 23  YYFR-----KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT--TLKWLI 75
           +Y+R        G+R +        F     +       + E +N    +PT  T+   +
Sbjct: 50  WYYRYDITDPKTGKRKQKEVGG---FRTKEEAQEAAVRIQSELLNGTYVEPTKLTVGEFL 106

Query: 76  SEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKH--TPSS 132
            ++ ++     +A N+     ++  + I    G      +T  H++    S +       
Sbjct: 107 LDFVENTLKYEVAPNTYEQRMTFVKNHIQPNIGSLRLTDLTPNHVQKFYNSLREHYGAGY 166

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK--RKTEGIRPWTKEDMQQFKSFWSEGS 190
                  +   F  AV+   ++ NP   V++P   RK   ++ WT ED ++F  +  +G 
Sbjct: 167 VQNIGNLLSKAFTQAVKWNMISRNPIPLVKKPSLSRKNTKMKTWTVEDQRKFLDYAKDGP 226

Query: 191 QPR-LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-----------------GTI 232
           +   + F   L SG+R  +        +      +  ++T                   I
Sbjct: 227 KLYYVIFLLALTSGMRKGELLGLIWDDVDTKKGIVSIKRTIVYAQRKLYLKDMPKTESAI 286

Query: 233 ITVELPDG----FMKLLAMTPIGKETFFINNDKQK--MNATQFSIWFKAKATKAGVNK-S 285
            T++LP+       +     P  +      + K K  +               AGV + +
Sbjct: 287 RTIQLPEPTIKVMKQWKLECPANELNLLFPSPKTKGILYPNSLDKQLAKTIKGAGVPEIT 346

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
            HG+R   AT    +      +    G  T+    +TY+ 
Sbjct: 347 MHGLRHTFATTLLGSNVNPKIVQEMLGHATIKTTMDTYSH 386


>gi|300855279|ref|YP_003780263.1| putative site-specific recombinase [Clostridium ljungdahlii DSM
           13528]
 gi|300435394|gb|ADK15161.1| predicted site-specific recombinase [Clostridium ljungdahlii DSM
           13528]
          Length = 328

 Score =  100 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 48/299 (16%), Positives = 99/299 (33%), Gaps = 43/299 (14%)

Query: 85  GSLAVNSRISFESYFDQIIR-------------KSGDFDYRKITTKHIRSGVES------ 125
              + N++  ++       R             +  + D   I T  IR    S      
Sbjct: 28  RGKSKNTQDGYQVDLTMFFRFLKIYRGIVKENYEFENIDISDINTDFIRKITLSDLYAFI 87

Query: 126 ------RKHTPSSAIQFLTSMRVLFKWA-VRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
                 R +   +  + +  ++  FK+   + + +  NP L +E PK         + ++
Sbjct: 88  SFAENYRNNGNYARARKVACLKSFFKYLFSKAKLIDTNPALELESPKIDKRNPIYLSLKE 147

Query: 179 MQQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
            +   +      + R      F L  G+R S+ C   +  ++ +  ++   K     T+ 
Sbjct: 148 SKILLNSIDGKFKERDYCIITFFLNCGMRLSELCSINISKIKEDTLTV-VGKGNKERTIY 206

Query: 237 LPDGFMKLL----------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--- 283
           L    +  L                K+  F++ +  ++N     +  K     AG++   
Sbjct: 207 LNRACLTALNNYLEIRNKDYDKIKDKDALFLSKNHTRINKRSVEMMLKKYLKNAGLDSNK 266

Query: 284 KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
            + H +R  +AT+    G      L    G + V   + YT   D       NS  +S+
Sbjct: 267 YTPHKLRHTAATLMYKYGNVDIRSLQKILGHENVSTTQIYTHVDDEQLREAVNSNPLSN 325


>gi|213649960|ref|ZP_03380013.1| shufflon-specific DNA recombinase [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
          Length = 382

 Score =  100 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 42/279 (15%), Positives = 92/279 (32%), Gaps = 23/279 (8%)

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121
              R K  +L   + +Y  +          +  F            +    +ITT  I S
Sbjct: 3   RPQRIKKMSLSKALDKYYATVSVHKRGH--QQEFYRVRVIQRHPLAEKMMDEITTVDIAS 60

Query: 122 GVESRKHTPSSAIQF----------LTSMRVLFKWA-VRQEYVAINPCLSVERPKRKTEG 170
             + R    ++              L  +  L+  A V       NP   V +PK     
Sbjct: 61  YRDDRLSQVNTRTGRCISGNTVRLELALLSSLYNLASVEWGTCRTNPVEMVRKPKISGGR 120

Query: 171 IRPWTKEDMQQFKSFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQ 227
            R  T ++ ++   ++ E +      F   + + +R  +      +H+     +  +   
Sbjct: 121 DRRLTSQEERRLSRYFQEQNPALHAIFHLAIETAMRQGEILSLRWEHIDLQHGVAHLPMT 180

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSA 286
           K G+   V L      LL        T  ++ +    +++ F   ++    +  + +   
Sbjct: 181 KNGSSRDVPLSRKARHLL-----QGMTVALSGNVFHYSSSGFKSAWRVALQRLNIVDLHF 235

Query: 287 HGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTK 324
           H +R  + +   + G     E+ A  G ++++  + YT 
Sbjct: 236 HDLRHEAISRLFELGTLNVMEVAAISGHRSLNMLKRYTH 274


>gi|86283512|gb|ABC92575.1| tyrosine site-specific integrase/recombinase protein [Rhizobium
           etli CFN 42]
          Length = 383

 Score =  100 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 48/274 (17%), Positives = 83/274 (30%), Gaps = 34/274 (12%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTK-----HIRSGVESRKHTPSSAIQFLTS 139
              A N+  S+E   D +         R             + +  +   PSS  + L +
Sbjct: 86  RGAAANTLQSYERDLDDVRSFLNGRSIRLTEAASADLAAYLASLARQGFKPSSQARRLAA 145

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-------SEGSQP 192
           MR  +K+   +     +P   ++ PK+     +    E++ +  S         + G   
Sbjct: 146 MRQFYKFLYAEGLRTDDPTGVLDAPKKGRPLPKTMGVEEVGRLLSQAQTEADDPAPGQLQ 205

Query: 193 R----LAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLA- 246
           R       E L  +G+R S+      + L     F +   K      V L    +  L  
Sbjct: 206 RRRMLALLELLYATGMRVSELVSLPARVLDQEGRFLMIRGKGNKERLVPLSHSAIAALKS 265

Query: 247 ------------MTPIGKETFFINNDKQKM-NATQFSIWFKAKATKAGVN---KSAHGVR 290
                         P      F    K+       F+   K  A +AG+     S H +R
Sbjct: 266 YGRLLAADAAAAKEPQESPWLFPAASKEGYLPRQVFARDLKNLAIRAGLTPSLISPHVMR 325

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              A+     GA    +    G   +   + YT 
Sbjct: 326 HAFASHLLANGADLRVVQELLGHSDISTTQIYTH 359


>gi|160893903|ref|ZP_02074682.1| hypothetical protein CLOL250_01458 [Clostridium sp. L2-50]
 gi|156864281|gb|EDO57712.1| hypothetical protein CLOL250_01458 [Clostridium sp. L2-50]
          Length = 379

 Score =  100 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 42/287 (14%), Positives = 86/287 (29%), Gaps = 44/287 (15%)

Query: 74  LISEYRKSAHWGSLA-----VNSRISF-ESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127
           L+  + +   W  L       N+  ++ E Y   I     +    ++   H +       
Sbjct: 67  LVDAWFEY--WIDLKKKTVRPNTVRNYSERYERNIKNVIENKLLTEVKPIHCQKIFSDMA 124

Query: 128 HTPSSAIQFLTSMRVLFK---WAVRQEYVAINPCLS-VER-PKRKTEGIRPWTKEDMQQF 182
                      +   L+    +A   E +  NPC   V+    + ++     T +D ++F
Sbjct: 125 DEGYKTTTIYQTRIALYNMLEFAKENEVIITNPCKKSVKSDIGKPSDKKEALTIDDQRRF 184

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL---------------QNNIFSIKTQ 227
            +     S     + F L +GLR  +      + +               +  +   +  
Sbjct: 185 LAAAKGQSYEY-QYRFALQTGLRTGELVGLKWEDINFERKTLTIERSMEFRYKVGEWRVG 243

Query: 228 KTGTI---ITVELPDGFMKLLAMTPIG-----------KETFFINNDKQKMNATQFSIWF 273
              +     T+ L D  + +L                  +T F+    Q +  + +    
Sbjct: 244 PPKSKSGYRTIPLTDEAICILKAQKEKNRKIKVIDKEWADTVFLCRKGQPVKNSTYDTAL 303

Query: 274 KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
                KAG+ + S H +R   AT   + G     L    G   +   
Sbjct: 304 FKICDKAGIKRFSMHVLRHTFATRCIEGGMMPKTLQKILGHSNIGIT 350


>gi|84683725|ref|ZP_01011628.1| site-specific recombinase, phage integrase family protein
           [Maritimibacter alkaliphilus HTCC2654]
 gi|84668468|gb|EAQ14935.1| site-specific recombinase, phage integrase family protein
           [Rhodobacterales bacterium HTCC2654]
          Length = 392

 Score =  100 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 55/327 (16%), Positives = 111/327 (33%), Gaps = 32/327 (9%)

Query: 12  TKERTRHGKIIYYFRKGHGRRIRLP-YPHES-TFIPAYMSALTGSTPKR-----EYINSP 64
            +  T   K+ Y   + +G R R+   P+   +   A   A+  +         +    P
Sbjct: 39  VRVSTTGAKVFYTLVRPNGSRRRIKIGPYPVVSLADARRRAMEIARDVELGEFEKTPEVP 98

Query: 65  RKKPTTLKWLISEYRKSAHWGSL--AVNSRISFESYFDQIIRKSG---DFDYRKITTKHI 119
                TL  +I        +  L    N++    +  + ++ K     D    +I  + +
Sbjct: 99  EASADTLGEMI------PKFIELHAKPNTKDWKRT--ESVLHKFDGLKDRPIDQIRRQDV 150

Query: 120 RSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
              ++      TP+ A + L++++ L  W V +  +  +P   +  P R+ +  R  +  
Sbjct: 151 SKVLDGIIANGTPTRANRALSAIKKLMNWCVMRGDIETSPVALLRPPTREVQRDRVLSDA 210

Query: 178 DMQQFKSFWSEGSQPRLAFE-FLLYSGLRCSDSCRAGVQHLQNNIFSI----KTQKTGTI 232
           +++           P   F   LL SG R S+        L  +           K   +
Sbjct: 211 EIRAIWQHSDAEDYPFGPFLKLLLISGQRRSEVAGMRWSELNLDEGIWELPANRVKNARL 270

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA----HG 288
             V LP   + +L       ++ F+     +   + F    K +   A    +     H 
Sbjct: 271 HIVPLPVQAVDILRGLHRFLDSDFVFTTTGRSAISGFG-RLKERVDTALPEGTPDWRFHD 329

Query: 289 VRKFSATISADAGATAHELMATYGWKT 315
            R+ ++T  A  G   H + A    K+
Sbjct: 330 FRRTASTGMAKLGVMPHVIDAVTNHKS 356


>gi|242240462|ref|YP_002988643.1| integrase family protein [Dickeya dadantii Ech703]
 gi|242132519|gb|ACS86821.1| integrase family protein [Dickeya dadantii Ech703]
          Length = 374

 Score =  100 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 40/242 (16%), Positives = 89/242 (36%), Gaps = 18/242 (7%)

Query: 95  FESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF---LTSMRVLFKWA-VRQ 150
                ++ + +    D  +     + S   +R   P SA      L  +  L+  A V  
Sbjct: 40  RSRLANRNMDEISSIDIAEYRDTRL-SEFNARTQKPISANTVRLELALLSALYNLAKVEW 98

Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA-FEFLLYSGLRCSDS 209
              +INP  ++ +P   +   R  T  + ++   ++ + +   LA F   L +G+R  + 
Sbjct: 99  GTCSINPVENIRKPTVSSGRTRRLTTHEERRLTRYFKDKNPELLAIFHIALETGMRQGEI 158

Query: 210 CRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT---PIGKETFFINNDKQKM 264
                +   L+  +  +   K GT   V L     ++L+     P  +  +  +      
Sbjct: 159 LSLRWEYTDLRLGVAHLPLTKNGTSRDVPLSSKARQILSGLGERPHHENGYIFS-----Y 213

Query: 265 NATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETY 322
            ++ F   ++       + +   H +R  + +   + G     E+ A  G K+++  + Y
Sbjct: 214 TSSGFKSAWRVALKALAIDDLHFHDLRHEAISRFFELGTLNVMEVAAISGHKSMNMLKRY 273

Query: 323 TK 324
           T 
Sbjct: 274 TH 275


>gi|284031468|ref|YP_003381399.1| integrase family protein [Kribbella flavida DSM 17836]
 gi|283810761|gb|ADB32600.1| integrase family protein [Kribbella flavida DSM 17836]
          Length = 318

 Score =  100 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 48/294 (16%), Positives = 100/294 (34%), Gaps = 37/294 (12%)

Query: 88  AVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESRKHT--PSSAIQFLTSMR 141
           + ++  ++      I     D         +T   +R+   +       SS ++  ++  
Sbjct: 20  SPHTTAAYRRDLAGITALLTDDPDSLQVEDLTAPALRAAFGAFADGHAKSSVLRAWSTWN 79

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM-QQFKSFWSEG---------SQ 191
               + V    +A NP  +V RPK      +P   ED  ++     ++G          +
Sbjct: 80  QFLTFCVSDGLLAGNPMGAVARPKTPPLSPKPLRGEDTPERLLQAAADGVRRGRDPWPER 139

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTGTI-ITVELPDGFMKLLAM- 247
             L     L +GLR ++        L        +     G+   ++ +     +++A  
Sbjct: 140 DVLVIALGLVAGLRSAEMRMLTADSLAGRPGEMRLHVHGKGSRDRSIPVEPIMERIIAAY 199

Query: 248 -------TPIGKET----FFINNDKQKMNATQFSIWFKAKATKAGVN------KSAHGVR 290
                   P  +        ++ +   +         K+    AG++       + H +R
Sbjct: 200 LDSCARRFPRKRFGRSAKLLLDREGSPIGRGGLEYLVKSCYRWAGLHDRVPVGANLHALR 259

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
              AT  A+ GATA E+MA  G  ++  ++ Y +   R +     S R    +D
Sbjct: 260 HTFATRLAEDGATASEIMALLGHASLATSQNYIEATGREQRAATASNRTYRTLD 313


>gi|182413068|ref|YP_001818134.1| integrase family protein [Opitutus terrae PB90-1]
 gi|177840282|gb|ACB74534.1| integrase family protein [Opitutus terrae PB90-1]
          Length = 388

 Score =  100 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 47/301 (15%), Positives = 85/301 (28%), Gaps = 48/301 (15%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD------YRKITTKHI 119
               + K     + K      ++  +   +    + +    G            I  +  
Sbjct: 73  AADVSFKTYTDIWLKRKATEEVSPGTLTRYRQIAEAMGEFLGPRIERNLVFLSAIEVQTF 132

Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE--GIRPWTKE 177
           R  + +R  +  SA  +L ++R+L   A R  +V  N    V+  K +      RP+T  
Sbjct: 133 RDLIGAR-LSAKSANIYLKTLRILLGEAWRDGHVIENVANKVKTLKVRENQTARRPFTTT 191

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN--IFSIKTQKTGTIITV 235
            ++   S      +      F  Y+  R  D        +     +   KT KT   + V
Sbjct: 192 QIEILLSHAPGEWKG--IILFGFYTAQRLGDIASLSWSQVDLEKAVVHFKTAKTHRTVEV 249

Query: 236 ELPDGFMKLLAMTPIG---------KETFFINNDKQKMNATQFSIWFKAKATKAGVN--- 283
            L D  +  L   P           K    +  + +       S  F    T A +    
Sbjct: 250 PLADPLLAFLKRLPAPERATAPVFPKAHAIVTKEGR---TGSLSNQFHEILTAAKLAEKR 306

Query: 284 --------------------KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
                                S H +R  + +     G          G ++   +E YT
Sbjct: 307 THHADAKAPTGRSGKRQTSALSFHSLRHSATSALKREGVNDATARDIVGHESRAISEHYT 366

Query: 324 K 324
            
Sbjct: 367 H 367


>gi|126178708|ref|YP_001046673.1| phage integrase family protein [Methanoculleus marisnigri JR1]
 gi|125861502|gb|ABN56691.1| tyrosine recombinase XerC subunit [Methanoculleus marisnigri JR1]
          Length = 304

 Score =  100 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 39/289 (13%), Positives = 94/289 (32%), Gaps = 32/289 (11%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS----------------------GD 108
               +  +       + +  +   +     +  R +                       D
Sbjct: 6   FSEWLDRFSSYLRMRNYSPRTIEKYLQTIRRFARYAWLRQNSDGVSFDGAAFENAPLDAD 65

Query: 109 FDYRKITTKHIRSGVESRKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167
            +          S +  ++   P +  + ++++   +K+   Q  V  +P L VERP+ K
Sbjct: 66  VNVSSALVTDFFSYLSEQQDYKPKTLHRMISTLSSFYKYLYVQGAVVADPMLGVERPRIK 125

Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227
            + ++      + +  +      + RL    +  +G+R S+ C   V+ +     +I+ +
Sbjct: 126 NQELKYLKHSQVLRLINTIES-ERDRLIVRLIYATGVRVSELCAICVEDIDFEEQTIRVK 184

Query: 228 KTGTII-TVELPDGFMKLLAMTP--IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284
             G  I TV + +  ++ +        +   F       ++       FK  A   G+  
Sbjct: 185 GKGDKIRTVFIDEETLEEINRFIGNTIEGPLFSGQQGNHLSPRTVQHLFKQYAPS-GI-- 241

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG--ADRIRL 331
           + H +R   A+           +    G  ++   E Y      +R R+
Sbjct: 242 TPHKIRHSYASELYRRSKNLRVVQENLGHSSIKTTEIYLHTDIDERKRV 290


>gi|93005052|ref|YP_579489.1| phage integrase [Psychrobacter cryohalolentis K5]
 gi|92392730|gb|ABE74005.1| tyrosine recombinase XerC subunit [Psychrobacter cryohalolentis K5]
          Length = 349

 Score =  100 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 43/313 (13%), Positives = 101/313 (32%), Gaps = 33/313 (10%)

Query: 45  PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR 104
           P+++SA    T + +   S    P      +  +       + + ++  ++ +  +Q+  
Sbjct: 22  PSWLSAELAITIEADAALSELLAP------VHRWLNVLSVRNHSPHTLTAYFAGLNQLAL 75

Query: 105 KSGDFDY------RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158
                        ++   +HI   ++  K + +S  Q L+++R  + W + ++   INP 
Sbjct: 76  FLRGKRLTWTRCDKRQLAQHISQRLDEDKLSLASVQQELSAIRHFYGWLIEEDLARINPT 135

Query: 159 LSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS--------QPRLAFEFLLYSGLRCSDSC 210
              +  +           + + Q        +        + +  FE L  SGLR  +  
Sbjct: 136 TGYQLKRSPRPLPSIADVDLLTQLLDQEIPDTPEQARLWLRDKAMFELLYSSGLRVGELV 195

Query: 211 RAGVQHLQNNIFSIKTQKTGTIIT-VELPDGFMKLLAM---------TPIGKETFFINND 260
              +  +      ++    G     V L       +             + +  F     
Sbjct: 196 ALDIVDVDLADLRVRVTGKGNKTRLVPLGIKAADAIRRYLPHRNLWVEQMDQALFISEKL 255

Query: 261 KQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
             +++        K  AT+AG+ ++   H +R   A+           +    G   +  
Sbjct: 256 GTRLSTRAVQQRLKVAATRAGIAQNMYPHLLRHCFASHMLSGSGDLRAVQEMLGHSDIST 315

Query: 319 AETYTKGADRIRL 331
            + YT   D  +L
Sbjct: 316 TQIYTH-VDFAKL 327


>gi|296110926|ref|YP_003621307.1| integrase [Leuconostoc kimchii IMSNU 11154]
 gi|295832457|gb|ADG40338.1| integrase [Leuconostoc kimchii IMSNU 11154]
          Length = 375

 Score =  100 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 55/347 (15%), Positives = 112/347 (32%), Gaps = 46/347 (13%)

Query: 16  TRHGKII----YYFRKGHGRRIRLPYPH------ESTFIPAYMSALTGSTPKREYINSPR 65
           ++HGK+     Y  R   G + R              +    ++  +    K     +P 
Sbjct: 8   SKHGKVYEVVGYIGRHQDGTQARAKKRGFDSKRSAQQWFNNEVALFSNGQSKYNKKTTPN 67

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE 124
               T+K L   + ++    ++  ++     + F+  II   GD     I    ++  + 
Sbjct: 68  V--MTVKELYDMWLETYQ-HTVEESTLNKTMNVFNVHIIPAWGDTRVTDIRPLDLQRYIN 124

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
           + +       +    +R L   AVR + + ++P   +E PK + +  +     D+ +FK+
Sbjct: 125 TMQGKILHYRKITGYLRRLLNIAVRMDMIPVDPFTKIEMPKERRQVNKRKQFMDVDEFKA 184

Query: 185 FWS--------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKT-------- 226
           F             Q          +G+R  +      + +       SI          
Sbjct: 185 FVEVLDSQYKYINQQAYTLLRLGAMTGMRTEELLALQWEQVDFNGGYISIVQALGRGFNG 244

Query: 227 -----------QKTGTIITVELPDGFMKLLAMTP-IGKETFFINNDKQKMNATQFSIWFK 274
                       K    I  ++         ++       F  NN  + +   + + W  
Sbjct: 245 GTYIKAPKSQTSKRTLKIDNKMLAVLSDWYEVSHYNSNNDFVFNNQGKTLQVMRPNKWLH 304

Query: 275 AKATKAG--VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
             + K G  V  S H +R   AT++ D GA+  ++    G   V   
Sbjct: 305 DVSNKYGVAVGLSMHKLRHTWATLALDQGASVKQVQTYLGHADVSMT 351


>gi|312109424|ref|YP_003987740.1| integrase [Geobacillus sp. Y4.1MC1]
 gi|311214525|gb|ADP73129.1| integrase family protein [Geobacillus sp. Y4.1MC1]
          Length = 301

 Score =  100 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 40/286 (13%), Positives = 92/286 (32%), Gaps = 36/286 (12%)

Query: 88  AVNSRISFE----SYFDQIIRKSGDFDYRKITTKHIRSGVESRKH----TPSSAIQFLTS 139
              +  S+      +     ++ G++   +     I+  +   KH     P++  +++ +
Sbjct: 18  DEKTIASYRTTVVHFLTWKEQRDGEYIIEETRPIDIKEYISYLKHQCKRKPATINKYIAA 77

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKR---KTEGIRPW-TKEDMQQFKSFWSE------G 189
           ++V F + +    +  NP   ++  K           W TKE+  +F S+          
Sbjct: 78  LKVFFAFLLSSGIIKDNPMTRIKVEKLDYANGANQTKWLTKEEQDRFISYVQLEPNEFKR 137

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVEL-------- 237
            +     + +LYSGLR ++     +  +    ++    I+  K     TV L        
Sbjct: 138 LRNLAIIDLMLYSGLRVNEVSSLEINDIITKDKDVQVIIREGKGNKFATVILVQKHAKNL 197

Query: 238 ---PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFS 293
                    L           F++                  A  A ++  + H  R   
Sbjct: 198 RKWLKYRKGLDKDIHKSSPRLFVSERSPFFTERGIQKMLNKYAELANMDHITPHRFRHSF 257

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
               A+AG     +      +++     Y + +   +  I+  R++
Sbjct: 258 CKNLANAGTPIELIRRLARHESIQTTAIYLESSQEEQ--IETLRKV 301


>gi|78187478|ref|YP_375521.1| phage/XerD family site-specific recombinase [Chlorobium luteolum
           DSM 273]
 gi|78167380|gb|ABB24478.1| site-specific recombinase, phage/XerD family [Chlorobium luteolum
           DSM 273]
          Length = 341

 Score =  100 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 54/309 (17%), Positives = 92/309 (29%), Gaps = 50/309 (16%)

Query: 65  RKKPTTLK-WLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS------GDFDYRKITT 116
           +  P TL   LI E+  S     +L+  + +++ +   Q           G+FD   +T 
Sbjct: 17  KDNPATLSERLIEEFLLSGRGQKNLSGTTIVAYRTDLRQFFGFLARHSGSGEFDLSLVTP 76

Query: 117 KHIR---SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
             +R     +  R     S  + L S++  F++     ++  +   +V  P+        
Sbjct: 77  SLVRMFMGDLLRRGLQQRSIARKLASLKSFFRFLHESRHLTESALSAVSMPRYSRPIPSF 136

Query: 174 WTKEDMQQFK------SFWSEG-------------SQPRLAFEFLLYSGLRCSDSCRAGV 214
            T+ +           +   EG              +     E L   GLR S+      
Sbjct: 137 LTEPEASMLFEDVVPMAPHREGFAHGRELQRNFTLLRDAAILEMLYGCGLRISELTGLRQ 196

Query: 215 QHLQN-NIFSIKTQKTGTIITVELPDGFMKLLA----------------MTPIGKETFFI 257
             L+    F   T K      V L    +  L                         F  
Sbjct: 197 SDLEMVGGFVKLTGKGRKQRIVPLGAPAVSALKKYFEVRLNFFRISVDGALGESDFVFLT 256

Query: 258 NNDKQ--KMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKT 315
           N  KQ   M   + +  +   A      K+ H +R   AT   + GA    +    G   
Sbjct: 257 NKGKQIYPMLVQRMTRRY-LAAVTEQKKKNPHTLRHTFATHLLNGGADLQSVSEMLGHSN 315

Query: 316 VDQAETYTK 324
           +   E YT 
Sbjct: 316 LSTTEIYTH 324


>gi|49474762|ref|YP_032804.1| site-specific tyrosine recombinase XerC [Bartonella quintana str.
           Toulouse]
 gi|49240266|emb|CAF26736.1| Integrase /recombinase xerC [Bartonella quintana str. Toulouse]
          Length = 322

 Score =  100 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 41/270 (15%), Positives = 78/270 (28%), Gaps = 28/270 (10%)

Query: 88  AVNSRISFESYFDQIIRKSGDFD-------YRKITTKHIRSGVESRKHTPSSAIQFLTSM 140
           A         +   + +  G           R    +   +   +   +  S  + +  +
Sbjct: 44  AQAYERDTRQFLSFLCQHLGHKPTFHDLANLRVTDLRAYLAYRRTLNISARSLSRGMAGL 103

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT--------KEDMQQFKSFWSEGSQP 192
           R  F +  R+  V+I     V  PK      +P          K++ QQ    W   ++ 
Sbjct: 104 RSFFNYLSREGIVSIPASKLVRTPKYSKSLPKPLAIKSALHVVKQENQQENESWII-ARN 162

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTGTIITVELP----DGFMKLLA 246
                 L   G+R S++     +   +        T K G    V L     +     L 
Sbjct: 163 AAVLILLYGCGMRISEALALTPEQFSDPEKTSLFVTGKGGKTRLVPLIKVVYETIQNYLK 222

Query: 247 MTP---IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAG 301
             P   +  +  F       ++        +   +  G+    + H +R   AT     G
Sbjct: 223 CCPYPLVENQPMFRGARGGPLHPAIIQRTVRNLRSSLGLPETATPHSLRHSFATHLLSRG 282

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRL 331
                +    G  ++   + YT   D  RL
Sbjct: 283 GDLRTIQELLGHASLSTTQIYTH-VDTDRL 311


>gi|67920907|ref|ZP_00514426.1| Phage integrase:Phage integrase, N-terminal SAM-like [Crocosphaera
           watsonii WH 8501]
 gi|67857024|gb|EAM52264.1| Phage integrase:Phage integrase, N-terminal SAM-like [Crocosphaera
           watsonii WH 8501]
          Length = 279

 Score =  100 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 48/242 (19%), Positives = 94/242 (38%), Gaps = 8/242 (3%)

Query: 88  AVNSRISFESYFDQIIRKSG-DFDYRKITTKH-IRSGVESRKHTPSSAIQFLTSMRVLFK 145
           +  +R  ++S   Q IR  G   +  KI   H     +E + + PS+    L++++ LF 
Sbjct: 23  SKLTRQHYQSNIKQFIRFIGLSLEEVKIEDIHGFVRMLELKGNKPSTIKGKLSTVKSLFS 82

Query: 146 WAVRQEYVAINPCLSVERPKRKTE-GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGL 204
           +A +  Y+  N  + V+ PK            ED+++     +   + RL  + + + GL
Sbjct: 83  FAYKVGYLTSNVAVLVKSPKVNKRIASMRIENEDIRKMVDGTNS-KRDRLIIKMMYFLGL 141

Query: 205 RCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ-- 262
           R S+  R    +   N   I  +           + F++L  +      TF     ++  
Sbjct: 142 RVSEVLRLKWSYFYQNKVFISGKGNKERSLNLPEELFLELSELKSEFNPTFVFTAYQRDE 201

Query: 263 KMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
           ++     +I       + G++     H  +   +  S D G   H L  + G  +V   E
Sbjct: 202 QLKRQAVNIMLNRLKKRLGIDANIHPHKFKHEHSMTSLDNGCDIHLLSRSLGHSSVSITE 261

Query: 321 TY 322
           +Y
Sbjct: 262 SY 263


>gi|258405086|ref|YP_003197828.1| integrase family protein [Desulfohalobium retbaense DSM 5692]
 gi|257797313|gb|ACV68250.1| integrase family protein [Desulfohalobium retbaense DSM 5692]
          Length = 371

 Score =  100 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 54/332 (16%), Positives = 102/332 (30%), Gaps = 31/332 (9%)

Query: 13  KERTRHGKIIYY---FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
            ++ R+GK++ +    R+    + R+    E         AL         I   R  PT
Sbjct: 3   SKKKRNGKMVGWLAQVRRQGVNKSRVCATREEA------LALEAQWKAEIKIEEERTTPT 56

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG-DFDYRKITTKHIRSGVESRKH 128
            L+W  ++Y   +     +  +        D ++R  G + + R IT  +  + ++    
Sbjct: 57  VLEW-GNDYLDFSK-KRHSERTYEEKRYALDLLVRAVGGETEVRHITVGNALAILDDVAE 114

Query: 129 TPSS--AIQFLTSMRVLFKWAVR--QEYVA-INPCLSVERPKRKTEGIRPWTKEDMQQFK 183
             S   A Q   ++   + W  R   ++    +P   VER   +         ED+Q   
Sbjct: 115 RRSGYVANQVRKNLLAAWNWGNRYLDKWPDMASPFGKVERYSYQKRPRVVPPMEDVQAVL 174

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ------NNIFSIKTQKTGTIITVEL 237
               E    R      L++  R  +  R   + +             +         + +
Sbjct: 175 EIMDE--TDRAMLLAYLHTAARRDEIFRLQWEDIDFANSKIALWTRKRQGGAWEADRIPM 232

Query: 238 PDGFMKLL---AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFS 293
                + L        G    F     +K        W      +AGV   S HG+R  +
Sbjct: 233 TRDLREALLKERGKGNGHGLVFCREGGRKY--QYRRHWIPYWCDRAGVPLFSFHGIRHLA 290

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKG 325
           A+           + A    K+ +    Y   
Sbjct: 291 ASWLDAHNVPLTTIQAVLRHKSANTTAKYLHE 322


>gi|326201175|ref|ZP_08191047.1| integrase family protein [Clostridium papyrosolvens DSM 2782]
 gi|325988743|gb|EGD49567.1| integrase family protein [Clostridium papyrosolvens DSM 2782]
          Length = 291

 Score =  100 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 39/284 (13%), Positives = 93/284 (32%), Gaps = 28/284 (9%)

Query: 73  WLISEYRKSAHWGSLAVNSRISF----ESYFDQIIRKSGDFDYRKITTKHIRSGV----E 124
             I+EY         + N+  SF      + +      G     ++  +  R        
Sbjct: 2   NWITEYENHLKTAQKSPNTISSFVSDVHEFVEWFAITYGKKFDCQVLEQDAREFRGFLLN 61

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF-K 183
             +  P++  + + +++   ++ V +      P   +         I+   + +  +  +
Sbjct: 62  ILRRKPATINRKMAALKSFNQFLVEKGLSKDIPIAGLLLADPSDREIKTLERTEQNKLKR 121

Query: 184 SFWSEGS-QPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFS-----IKTQKTGTII 233
           + +++G+ +    +E L   G+R S+     ++ +    +N   +     I+  K     
Sbjct: 122 AIYAKGNKRDIAIYELLYNIGVRVSELVSLSLEDVHLTERNGNINYSYVIIRQGKGSKYR 181

Query: 234 TVELP----DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHG 288
              L         + L +     +  FI      +         K     AG+++ S+H 
Sbjct: 182 ECPLNAQARSALDEYLKIRVSSSDNIFIGQRG-PLGREAVDKILKKYCADAGIDRISSHV 240

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETY---TKGADRI 329
           +R    T     G     +    G  +V+    +   T  AD+I
Sbjct: 241 IRHTFCTRLIQEGVPLPTVSRLAGHSSVETTTRFYVHTPRADKI 284


>gi|295399108|ref|ZP_06809090.1| integrase family protein [Geobacillus thermoglucosidasius C56-YS93]
 gi|294978574|gb|EFG54170.1| integrase family protein [Geobacillus thermoglucosidasius C56-YS93]
          Length = 324

 Score = 99.7 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 41/294 (13%), Positives = 92/294 (31%), Gaps = 44/294 (14%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR----KSGDFDYRKITTKHIRSGVE-- 124
           L + + ++       +L+  +  S+E      I     + G  +   + T HIR  +   
Sbjct: 6   LDFYLQDFLLYCQSKNLSPKTLSSYEQSLKLFIAYLKNEHGIEEVDAVRTGHIRQYIAYL 65

Query: 125 --------------------------SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158
                                     ++K +  +   ++ +++V F W   +  +  NP 
Sbjct: 66  QERGKYTVVNREASRLINRPENRRDYNKKISNVTINNYIRNIKVFFNWLHEEGEIHKNPV 125

Query: 159 LSVERPKRKTEGIRPWTKED----MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGV 214
             +++ K + +     ++E+    + QF      G + ++    L  +G+R  +     V
Sbjct: 126 DKIKQIKTERKQKAGISQEEFNLLLSQFDYTTFHGYRNKVITMLLQDTGMRIGECLALTV 185

Query: 215 QHLQ--NNIFSIKTQKTGTIITVE----LPDGFMKLLAMTP--IGKETFFINNDKQKMNA 266
             +   + +  +K  K      V     +       +         E  F       +  
Sbjct: 186 DDIDFKHRMILVKKTKGRKERYVYFSQVMARELKHYIRFKDRYTDTELLFPTTRNTPLTV 245

Query: 267 TQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
             F    K    + G++   H +R   A      G   + L    G  +V   E
Sbjct: 246 HSFEKQLKQAGERIGLSIHPHQIRNNFARQYLLNGGDLYTLSRILGHSSVKVTE 299


>gi|220930346|ref|YP_002507255.1| integrase family protein [Clostridium cellulolyticum H10]
 gi|220000674|gb|ACL77275.1| integrase family protein [Clostridium cellulolyticum H10]
          Length = 307

 Score = 99.7 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 40/276 (14%), Positives = 94/276 (34%), Gaps = 19/276 (6%)

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
           K    K  +S++         +  +   ++ + +   ++  +     +    +  G    
Sbjct: 7   KKADWKKALSDFLLLKRAEGKSERTIKDYDKHVNIFFKRYPNA-LADLEASVL--GYMGE 63

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
              P++       ++  F +   ++ +  NP + + + K + + I     + +QQ  +  
Sbjct: 64  NIKPATYNLRRAYLKCFFDYLKEEDIITSNPIIKLPKRKAQDKIIDI-PVDVLQQLLALP 122

Query: 187 SE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQ--KTGTIITVELP 238
            +    G         ++  G+R  ++    V       N  +I  +  KTG   T+ L 
Sbjct: 123 DKSSFTGLVDHCLILLMMDCGIRPKEALTLKVSDFDIKHNCVTIPAELAKTGVSRTLPLS 182

Query: 239 ----DGFMKLLAMTPIG---KETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRK 291
                   K+++  P         F +   + +++   S  FK  + K G + + + +R 
Sbjct: 183 IETVRPITKVISSRPKDWNNNVPVFCSCSAETLDSEVLSRRFKRYSQKLGTDITPYSLRH 242

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
             A      G  +  L    G  T D    Y   +D
Sbjct: 243 CFALYYLRNGGNSLMLQKIMGHTTQDMTRKYVALSD 278


>gi|315443040|ref|YP_004075919.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1]
 gi|315261343|gb|ADT98084.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1]
          Length = 403

 Score = 99.7 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 57/334 (17%), Positives = 110/334 (32%), Gaps = 39/334 (11%)

Query: 19  GKI-IYYFRKGHGR-RIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76
           GK+  +  R        R           AY++ LT    + EY++ PRK   T   +  
Sbjct: 34  GKVSRWRVRWVDATGAERTKSFQRKPDAQAYLNGLTADVQRGEYVD-PRKSAETFGTVAE 92

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRSGVESR--------- 126
           ++  +         +   + S  D + + K  D   +++  +   + + +          
Sbjct: 93  QWFTTK--QHRKPKTVAGYRSLLDTVVLPKWEDVPLKRLDYESYSTWLGALSVDGGQRGA 150

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER----PKRKTEGIRPWTKEDMQQF 182
             + S   Q    +  + K+A R   VA N  L ++R    P++     R  +  ++   
Sbjct: 151 GLSASRITQAHQLVGAVLKYAQRTGKVAKNVALEIKRDEDLPEQAERERRYLSHAELLML 210

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--------------TQK 228
                      L      Y GLR  ++     +H+ + + +++              T K
Sbjct: 211 AKAADRFETLTLVLG---YCGLRFGEAVALRRRHVGDRVLTVRSSATAVTGKGIVESTTK 267

Query: 229 TGTIITVELPDGFMKLLAM-TPIGKETFFINNDKQKMNATQFSIW-FKAKATKAGVNK-S 285
           T     V +P+   K L    P         + K          W F     + G+    
Sbjct: 268 TKRDRHVPVPEPVWKRLHAELPTDPNALVFPSRKGGFLPLGEYRWAFDNACAEVGIEGLV 327

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
            HG+R  +A+++  AGA    +    G  T    
Sbjct: 328 PHGLRHTTASLAISAGANVKVVQRLLGHATAAMT 361


>gi|149199882|ref|ZP_01876911.1| phage integrase family protein [Lentisphaera araneosa HTCC2155]
 gi|149137053|gb|EDM25477.1| phage integrase family protein [Lentisphaera araneosa HTCC2155]
          Length = 441

 Score = 99.7 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 57/312 (18%), Positives = 107/312 (34%), Gaps = 36/312 (11%)

Query: 44  IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII 103
              +         +       ++K +       ++ +S     L   S+   + Y   ++
Sbjct: 72  WDIFKKEAPALMKREPSPTKWKQKESCWNDF-KDFLESKEVEDLRQVSKSHAQEYV-GLL 129

Query: 104 RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163
           + SG F+ R I+ K   +  E ++ +PS+  +++T ++ +F     +  + INP   + +
Sbjct: 130 KDSGKFNKRIISKKGSYTS-EIKELSPSTINEYMTHIKQVFTLLHDRANLLINPFDGIPK 188

Query: 164 PKRKTEGIRPWTKEDMQQFKSF------WSEGSQP-------RLAFEFLLYSGLRCSDSC 210
              K +    +   ++ +   F      W   S P       R  F   L +GLR  D C
Sbjct: 189 VDGKKKKRDVFEISELTKINDFLVKGKSWKYSSNPKLDILILRTLFIVGLNTGLRRGDIC 248

Query: 211 RAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLL--AMTPIGKETFFI--NNDKQKM 264
                   L  N  S++  KT   +++ +    M  L       G   F +    D  + 
Sbjct: 249 MLDWPSVDLDKNRISLENSKTEVFVSIPISAPLMTFLNERHAITGGSGFVVPELADMYQN 308

Query: 265 NATQFSIWFKAKATKAGV--------------NKSAHGVRKFSATISADAGATAHELMAT 310
           N+   S  F+    K  +              NK  H +R     +    G +  EL   
Sbjct: 309 NSDGISYRFRQMLDKLKIKNTKEVTGRTVAVSNKDIHSLRHTFCYLHGIQGTSIQELQLM 368

Query: 311 YGWKTVDQAETY 322
            G  T    E Y
Sbjct: 369 TGHLTPKMTEAY 380


>gi|77454860|ref|YP_345728.1| putative transposase [Rhodococcus erythropolis PR4]
 gi|229492444|ref|ZP_04386248.1| putative transposase [Rhodococcus erythropolis SK121]
 gi|77019860|dbj|BAE46236.1| putative transposase [Rhodococcus erythropolis PR4]
 gi|229320673|gb|EEN86490.1| putative transposase [Rhodococcus erythropolis SK121]
          Length = 341

 Score = 99.7 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 28/224 (12%), Positives = 65/224 (29%), Gaps = 28/224 (12%)

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPC-------------LSVERPKRKTEGIRPWTKE 177
           S+  + L S+  LF +   +  V  NP                    +      R  + +
Sbjct: 93  STIKRRLASISGLFSYLHERGLVEKNPVPRGLSTRSGRSHVRGTPLIRAPRRLPRVLSPD 152

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITV 235
           ++    +      + R     +L+ GLR  +     +  ++       +   K G    V
Sbjct: 153 EVNALLAALRC-ERDRAMVLLMLFGGLRRCEVLGLRMPDVRPGERRVFVAAGKGGHQRIV 211

Query: 236 ELPD-------GFMKLLAMTPIGKETFFIN----NDKQKMNATQFSIWFKAKATKAGVNK 284
            +          ++          +  F+          ++A            + G+  
Sbjct: 212 PVAPTFFESLGRYLDAERPIDSATDHVFVVLKRPRRGNPLSAAGLDEILSGARVRGGLPH 271

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
            + H +R    T   ++G     + A  G  +++    Y   A+
Sbjct: 272 ATCHELRHTCFTRLRESGMALEAIQAQAGHASIESTRIYLHLAN 315


>gi|260907246|ref|ZP_05915568.1| phage integrase family protein [Brevibacterium linens BL2]
          Length = 319

 Score = 99.7 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 41/299 (13%), Positives = 92/299 (30%), Gaps = 42/299 (14%)

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD------------YRKIT 115
           PTT+  ++S Y        ++ ++  ++ +        +                   I 
Sbjct: 4   PTTIAEVVSGYADHLRSRDVSAHTSRAYVADVSDFFDHTAHAPGAGDKSRAAELQVSDID 63

Query: 116 TKHIRSGV---ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
              +RS +   +      S+  + + +++  F + V Q  ++ NP   +  PK+ +    
Sbjct: 64  LNDLRSWLITLDDAGAAKSTVARKIAAVKSFFAYCVNQHGLSNNPAARLRTPKKDSRLPT 123

Query: 173 PWTK----EDMQQFKSFWSEGS-----------QPRLAFEFLLYSGLRCSDSCRAGVQHL 217
                   + + + ++  +E             +     E L  + +R S+        +
Sbjct: 124 VLKPQQAADLVSRQRTVHTEADNSDPIEATKWVRDAAILEMLYATAVRVSELTGLNRGDV 183

Query: 218 QNNIFSIKT-QKTGTIITVELPDGFMKLLA---------MTPIGKETFFINNDKQKMNAT 267
            +    I    K      V         L           +    +  F+     ++ A 
Sbjct: 184 DHQRSMITVLGKGNKERRVPYGKPAQTALQKWLSLRDTFASESSGDALFLGVRGGRIGAR 243

Query: 268 QFSIWFKA--KATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           Q          A  +  +   HG+R  +AT   D GA   ++    G  T+   + YT 
Sbjct: 244 QVRELVHRYGAADPSAPDIGPHGLRHSAATHMLDGGADLRQIQELLGHSTMSSTQIYTH 302


>gi|121595275|ref|YP_987171.1| phage integrase family protein [Acidovorax sp. JS42]
 gi|120607355|gb|ABM43095.1| phage integrase family protein [Acidovorax sp. JS42]
          Length = 444

 Score = 99.7 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 64/346 (18%), Positives = 127/346 (36%), Gaps = 30/346 (8%)

Query: 9   PFVTKERTRHGK----IIYYFRKGHGRRIRLPYPHESTFIPA------YMSALTGSTPKR 58
           P    + T  G+    + Y    G  R+ R+    E T   A      +M+ +   +   
Sbjct: 29  PGFLCKVTASGRKIFMLHYRTNSGERRKPRIGRFGELTVEQARSIAQDWMADVRKGSDPS 88

Query: 59  EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTK 117
               + R+ P T+K L +++ +         ++  +++ + ++ I+ K G     ++T  
Sbjct: 89  AAKQAARQAP-TVKELCTQFIEEYSKTRNKPSTVATYQDHINRYIVPKLGKIKVPELTRV 147

Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI--NPCLSVERPKRKTEGIRPWT 175
            +   +       S+A + L  +R +F  A    Y     NPC  V + +   E  R  T
Sbjct: 148 DVAEVMRDMAKISSTANRTLACLRKMFNMAEVWGYRPDGSNPCRHVPKYRENGE-TRYIT 206

Query: 176 KEDMQQFKSFWS-------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKT 226
            E++ +  ++         E     LA         R S+        +   N   +   
Sbjct: 207 DEELARLYAYLDRADAEGLEHPTLTLAIRLQFEFSARMSEIRTLQWAWIDFENRRVAWPD 266

Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFF----INNDKQKMNATQFSIWFKAKATKAGV 282
            KTG  I+  + +   +LL+     +++ +    I +    + +  +   ++    +A V
Sbjct: 267 SKTGG-ISKPMSEVAHQLLSNAERIEDSPYVCPSIYDGNLPLPSGTYYNSWRRILLRAKV 325

Query: 283 NK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
                HG+R  +AT  A++G      MA    KTV     Y    D
Sbjct: 326 PHVGTHGIRHRAATDIANSGVPLKVGMALTAHKTVSMFMRYVHAED 371


>gi|323499333|ref|ZP_08104310.1| super-integron integrase IntIA [Vibrio sinaloensis DSM 21326]
 gi|323315721|gb|EGA68755.1| super-integron integrase IntIA [Vibrio sinaloensis DSM 21326]
          Length = 320

 Score = 99.7 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 52/308 (16%), Positives = 97/308 (31%), Gaps = 62/308 (20%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
           I EY +S  +   A  +  ++  +  + I  SG     K+    +   +         A 
Sbjct: 9   IKEYMQSRRY---APKTIQAYLLWITKFIAYSGMQHPSKLKEHEVEQFLTYLAVEEKVAA 65

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT----EGIRPWTKEDMQQFKSFWSEGS 190
           +          +  R+ +      LSVE   +K+    +      K++M++F        
Sbjct: 66  KTQALALNAINFLYREYFRTP---LSVEMKFQKSLLDRKLPVVLNKQEMRRFVQHIDP-- 120

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLAMT 248
           + +L    L  SGLR  +  R  +Q +  +  +++    K G    V L D  + LL   
Sbjct: 121 RYKLHIMLLYGSGLRVMECVRLRIQDVDFHYKALRIWQGKGGKNRVVTLADELLPLLKQQ 180

Query: 249 PIGKETFFINN----------------------------------------------DKQ 262
                 ++  +                                               + 
Sbjct: 181 QSVALAYYNKDIHSPGYEGVHLSNSLQRKYPGAELDFNWHFMFPSHKLSIDPESMGWKRH 240

Query: 263 KMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
            +N T      K  A  AG++K  + H +R   AT   ++GA    +    G   V   +
Sbjct: 241 HINETALQRAVKRSAQDAGIDKNVTCHTLRHSFATHLLESGADIRTVQEQLGHSDVKTTQ 300

Query: 321 TYTKGADR 328
            YT   +R
Sbjct: 301 IYTHVIER 308


>gi|257074479|ref|YP_003162877.1| integrase [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
 gi|257048700|gb|ACV37886.1| integrase family protein [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
          Length = 322

 Score = 99.7 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 47/270 (17%), Positives = 92/270 (34%), Gaps = 31/270 (11%)

Query: 90  NSRISFESYFDQIIRKSG---DFDYRKITTKHIRSGVES---RKHTPSSAIQFLTSMRVL 143
            +R ++E+     ++ +G     ++R +   H+ +  +    R  +  +    L ++  L
Sbjct: 42  ATRRAYENALGDFMKFTGIVKPEEFRTVIRAHVIAWRDDLVQRALSGMTVRHRLAALSSL 101

Query: 144 FKWAVRQEYVAINPCLSVERPKRKT-EGIRPWTKED-----MQQFKSFWSEGSQPRLAFE 197
           F+    +  V  NP   V+RP  ++ EG  P   +      +        +G + R    
Sbjct: 102 FESLCEKNAVTHNPVKGVKRPPVESYEGKTPALGDHQARKLLDAPDGASLKGKRDRAILA 161

Query: 198 FLLYSGLRCSDSCRAGVQHL---QNNIFSIKT-QKTGTIITVELPDG-------FMKLLA 246
            LLY  LR  + CR  V+     +  +  +K   K G I  V L          ++++  
Sbjct: 162 TLLYHALRRDELCRLTVKDYKHERRGVPHLKVFGKGGKIRYVPLHPAAGGLIGDYLEIAG 221

Query: 247 MTPIGKETFF------INNDK--QKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISA 298
                    F             + +         +  +T  G    AH +R  +AT + 
Sbjct: 222 HGADDAGALFRPLRNNCTTGGLERAITPDAVYKLVRQYSTALGFAIGAHALRATAATNAL 281

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADR 328
           D  A   ++    G   +     Y     R
Sbjct: 282 DHQADIAKVQEWLGHANIATTRIYDHRKTR 311


>gi|237733058|ref|ZP_04563539.1| conserved hypothetical protein [Mollicutes bacterium D7]
 gi|229383860|gb|EEO33951.1| conserved hypothetical protein [Coprobacillus sp. D7]
          Length = 286

 Score = 99.7 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 37/268 (13%), Positives = 89/268 (33%), Gaps = 23/268 (8%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           LI  Y+        ++ +   +    ++  + +   +  K   K  +  +    + P+S 
Sbjct: 10  LIVNYKNHLIDEEKSLATITKYIRDIEKFYQYADKKEVTKELVKLYKEELMK-SYKPTSI 68

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI----RPWTKEDMQQFKSFWSEG 189
              L ++   F++     ++       ++  K +        +  +K++ ++  +   + 
Sbjct: 69  NSMLAALNQFFEY---NGWLE----CKIKELKIQKRVFLEESKELSKDEYKRLVNAARKQ 121

Query: 190 SQPRLAFEF--LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL-- 245
              RL      +  +G+R  +     VQ L++    I     G +  +   D   ++L  
Sbjct: 122 KNERLYVLLQAICSTGIRVGEHRYITVQALKDGYAQI--YNKGKVREIFFSDDLKRILLK 179

Query: 246 --AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADA 300
                 I     F+    + ++ +      K     A V +S    H +R   A    + 
Sbjct: 180 YCHKNKIENGAIFVTRSGRPLDRSNIWKAMKDLCDDAKVERSKVYPHNLRHLFAVTYYNL 239

Query: 301 GATAHELMATYGWKTVDQAETYTKGADR 328
                 L    G  ++D    YT  + R
Sbjct: 240 KKDIARLADLLGHSSMDTTRIYTMSSGR 267


>gi|195940859|ref|ZP_03086241.1| shufflon-specific DNA recombinase [Escherichia coli O157:H7 str.
           EC4024]
          Length = 374

 Score = 99.7 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 45/274 (16%), Positives = 97/274 (35%), Gaps = 19/274 (6%)

Query: 65  RKKPTTLKWLISEYRKSAHWGS---LAVNSRIS---FESYFDQIIRKSGDFDYRKITTKH 118
           + +  T+   + +Y K+        L    R++        ++ +      D      + 
Sbjct: 6   KIRKMTISRALDKYVKTVSIHKKGHLQEFYRVNVIKRHPIAERYMDDITTVDIANYRDQR 65

Query: 119 IRSG--VESRKHTPSSAIQFLTSMRVLFKWA-VRQEYVAINPCLSVERPKRKTEGIRPWT 175
           +        R+ T ++    L  +  LF  A V      +NP   V +PK  +   R  T
Sbjct: 66  LAQINPRTGRQITGNTVRLELALLSSLFNIARVEWGTCRMNPVELVRKPKISSGRDRRLT 125

Query: 176 KEDMQQFKSFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTGTI 232
             + ++   ++ E +Q   + F   L + +R  +      +H+     +  + T K G  
Sbjct: 126 SGEERRLSRYFKEKNQALYVIFHLALETAMRQGEILSLRWEHVDLQHGVAHLPTTKNGAP 185

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRK 291
             V L       L M P       +N +     ++ F   ++    +  + N   H +R 
Sbjct: 186 RDVPLSRKARNYLQMLPTQ-----LNGNIFSYTSSGFKSAWRTALQELKIENLHFHDLRH 240

Query: 292 FSATISADAG-ATAHELMATYGWKTVDQAETYTK 324
            + +   + G     E+ A  G ++++  + YT 
Sbjct: 241 EAISRFFELGTLNVIEVAAISGHRSLNMLKRYTH 274


>gi|71906676|ref|YP_284263.1| Phage integrase [Dechloromonas aromatica RCB]
 gi|71846297|gb|AAZ45793.1| Phage integrase [Dechloromonas aromatica RCB]
          Length = 338

 Score = 99.7 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 50/321 (15%), Positives = 100/321 (31%), Gaps = 21/321 (6%)

Query: 16  TRHGKIIYYFRKG-HGRRI-RLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
            R     ++ +    GR++ R     +      +   L     ++  +    K   + K 
Sbjct: 5   KRKDSSCWWVKIIIDGRKVQRSTGTDDKIKAQEFHDRLKAQMWEQNRLGV--KARRSWKE 62

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK--HIRSGVESRKHTPS 131
            +  + +          +    +     +    G     +IT          + ++   +
Sbjct: 63  AVVRWLEETS----EKATHNEDKRKLIWLDTYLGKLMLDEITLDVIDSVRAAKLKEAAKA 118

Query: 132 SAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           +  ++L  MR +   A  + E++   P   V   K      R  T+E   +         
Sbjct: 119 TTNRYLALMRSILLRARDEWEWIDKVP--KVRLFKESASRERSLTREQAGKLLEELP--Q 174

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGFMKLLA 246
             R    F L +GLR S+  +     +              K    I++ L +    +L 
Sbjct: 175 HQRDVVLFALATGLRQSNVLQLEWSQINLEQRHAWIHAWQSKNRRPISIPLNEAAYSVLI 234

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAH 305
                 E+       + + +     W +    ++G++    H +R   AT    AG   H
Sbjct: 235 RQKGKHESRVFTFRGKPLESANTRAW-RKALLRSGIDNFRWHDLRHTWATWQRQAGTPTH 293

Query: 306 ELMATYGWKTVDQAETYTKGA 326
           EL    GW+T    E Y   A
Sbjct: 294 ELQRLGGWRTGAMVERYAHLA 314


>gi|75812471|ref|YP_320090.1| Phage integrase [Anabaena variabilis ATCC 29413]
 gi|75705227|gb|ABA24901.1| Phage integrase [Anabaena variabilis ATCC 29413]
          Length = 343

 Score = 99.7 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 52/311 (16%), Positives = 104/311 (33%), Gaps = 35/311 (11%)

Query: 49  SALTGSTPKREYINSPRKKPTTLKWL-ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG 107
            A +    +          PT ++W+ + E+ +S    +LA NSR  +E    + +    
Sbjct: 21  QAPSTLQEQSRSRGRKTSLPTDIRWIKVLEFLRS---TNLAPNSRKLYERELKRFLA-WT 76

Query: 108 DFDYRKITTKHI-------RSGVESRKHTP---SSAIQFLTSMRVLFKWA--VRQEYVAI 155
              Y +++ +H+       R  V++    P   +S    + +++  F W      E +  
Sbjct: 77  QLHYHELSPRHLGLYKEYLRDEVKTDAGKPLSKASINAGVAALKSFFNWMCYTYPEIIVT 136

Query: 156 NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE--GSQPR-LAFEFLLYSGLRCSDSCRA 212
           NP L ++  K      +  T E M++  S       ++ R  A   +L  GLR  +  + 
Sbjct: 137 NPTLGIKLEKVPLPPAQSLTDEQMERVWSALELLGETKGRDTALVHILSHGLRAGEIVQL 196

Query: 213 GVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE----------TFFINND-- 260
            V      +  +   KT     V L      +L      +              I++   
Sbjct: 197 NVGSFDGKLLFLPDTKTNEPRLVPLRKESRDVLEAYLRSRREQGEELNSLTPLMISHHAS 256

Query: 261 --KQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVD 317
               +++        +     AG+ +   H  R   AT     G          G ++  
Sbjct: 257 YKGDRLSYHGIYFAVEKIGELAGIEDLHPHQFRHTYATELLLLGVDPSHARKLTGHQSEK 316

Query: 318 QAETYTKGADR 328
               YT  +++
Sbjct: 317 AFRRYTLRSEQ 327


>gi|323517745|gb|ADX92126.1| hypothetical protein ABTW07_1697 [Acinetobacter baumannii
           TCDC-AB0715]
          Length = 319

 Score = 99.7 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 57/321 (17%), Positives = 111/321 (34%), Gaps = 36/321 (11%)

Query: 16  TRHGKIIYYFRKGHGRRIRLPYPHESTF-IPAYMSALTGSTPKREYINSPRKKPT-TLKW 73
            R+G+I    R               TF       A    T  +      +     TL+ 
Sbjct: 6   KRNGRITATVRIKPHPAK------SKTFNTKKEAKAWADETELQLKNEKEKIFTHITLRQ 59

Query: 74  LISEYRKSAHWG---SLAVNSRISFESYFDQIIRKSG-DFDYRKITTKHIRSGVESRKHT 129
            I EYR +        +   +R       +Q I+    D    ++  + + +  E R  +
Sbjct: 60  AIEEYRDTVSIHKKGGVKEVTR------LNQFIKIMNVDVSLSEVNKEFLVNFREYRLES 113

Query: 130 --PSSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             P++  + L  +  +F W + ++ +++ +P   V+ PK      +  +  +++    F 
Sbjct: 114 VVPATVRRELLMLSGMFSWCIDKKLWLSSSPMDGVKLPKASNHREKVISDFEIETLLPF- 172

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKL 244
               + +  F   L +G+R S+ C    + +        +KT K G    V L    + +
Sbjct: 173 -LNDELKSIFLIALETGMRLSEICLLEWERIFLDKQYLVLKTTKNGRPREVPLNVIAVDI 231

Query: 245 LAMTPIGKETFFINNDKQKMN--ATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAG 301
                + K         +  +      S  F     KAG+ + + H  R  +AT  A   
Sbjct: 232 FIGIGVKKS-------GRVFSYEPKYASADFMKARIKAGLYDFTFHDTRHTAATRIAPK- 283

Query: 302 ATAHELMATYGWKTVDQAETY 322
               +L   +GW    +A  Y
Sbjct: 284 LPLLDLCKMFGWTDPKRAMVY 304


>gi|282920050|ref|ZP_06327778.1| hypothetical protein SASG_02692 [Staphylococcus aureus subsp.
           aureus C427]
 gi|282316221|gb|EFB46601.1| hypothetical protein SASG_02692 [Staphylococcus aureus subsp.
           aureus C427]
          Length = 390

 Score = 99.7 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 63/385 (16%), Positives = 128/385 (33%), Gaps = 62/385 (16%)

Query: 17  RHGKIIYYFRK---GHGRRIRLPYPHESTF----IPAYMSALTGSTPKREYINSPRKKPT 69
           + G   + +R          +  Y   S F       + + +     +     +P    +
Sbjct: 6   KRGNT-WRYRISLGKDAETGKYKYISNSGFKRKSDAKHHAEMVERQLRNGEYIAP--STS 62

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           T K +  ++  S +   + V+S  + E   +  I +  +   + I     +  V      
Sbjct: 63  TFKQVADDWI-SQYANEVKVSSVRAREKAINHAIERFNNKPIQTINKHEYQRFVNDISAQ 121

Query: 130 PSSA--IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK--------TEGIRP-WTKED 178
            S       + S  ++FK+A   + + I P   ++RPK+K        TE  +    K++
Sbjct: 122 YSKNYVDSIIASTNMIFKYAYDMKLIRILPSEGIKRPKKKVSVEELEDTEIYKKFLEKDE 181

Query: 179 MQQFKSFWSEGSQPRLAFEF---LLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ------ 227
           + QF         P+ +FE    L Y+G+R  +        +   NN  +I         
Sbjct: 182 LFQFLEIAKNHHSPQNSFEVFCTLAYTGMRAGELLALKWSDIDFENNTINITKTYYNPNN 241

Query: 228 ----------KTGTII-TVELPDGFMKLLAMTPI------------GKETFFINNDKQKM 264
                     KT + I  + +    +KLL                      F + +   +
Sbjct: 242 NKKQYQILTPKTESSIGKISVDPHVIKLLKNYKTDVQDTWKNELYVDNNFVFTDVNGYPL 301

Query: 265 NATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE- 320
              +  +W KA   K  +     S H  R     +  +AG    E+      K ++    
Sbjct: 302 VIKKLQLWIKAILKKTDITNKQISTHSFRHTHCALLIEAGVHIKEIQERLRHKDINTTMN 361

Query: 321 TYTKGADRIRLGIKNSRRISSVVDS 345
            Y K  +  +     S++ S ++++
Sbjct: 362 IYAKITNSYKK--DASQKFSKLMEN 384


>gi|115522171|ref|YP_779082.1| tyrosine recombinase XerD [Rhodopseudomonas palustris BisA53]
 gi|115516118|gb|ABJ04102.1| tyrosine recombinase XerD subunit [Rhodopseudomonas palustris
           BisA53]
          Length = 326

 Score = 99.7 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 51/302 (16%), Positives = 97/302 (32%), Gaps = 46/302 (15%)

Query: 74  LISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGV---ESRK 127
           LI  +    A       N+  ++ S    +    G          T  +R+ +   ++R 
Sbjct: 11  LIELFLDMLAAEQGAGKNTLDAYRSDLADLAAFLGHAKTSLSGADTHALRAYLIDLDARG 70

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           +  +S  + L+++R LF++ + +   A +P   +  PKR     +  +  D+ +      
Sbjct: 71  YKSASVARKLSALRHLFRFLLTERVRADDPAAILSGPKRGRGLPKVMSIADVDRLLEHAK 130

Query: 188 --------EGSQPRLA-----FEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTII 233
                    G Q R A      E L  +GLR S+     V   + +    +   K     
Sbjct: 131 RLAEAPGRAGEQVRAARLYCLLEVLYATGLRVSELVSLPVSAARRDARMIVVRGKGNKER 190

Query: 234 TVELPDGFMKLLAM-----------------------TPIGKETFFINNDKQKMNATQFS 270
            V L +   + +A                            K  F  + +   +    F+
Sbjct: 191 LVPLNESSKRAMAAYLEAIAAQDRERDKEKGKAKPGKAAAQKWLFPSSGESGHLTRQHFA 250

Query: 271 IWFKAKATKAGVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
              K  A  AG++    S H +R   A+     GA    +    G   +   + YT   +
Sbjct: 251 RELKELAAAAGLSARLISPHVLRHAFASHLLHNGADLRIVQTLLGHTDISTTQIYTHVVE 310

Query: 328 RI 329
             
Sbjct: 311 ER 312


>gi|288941419|ref|YP_003443659.1| integrase family protein [Allochromatium vinosum DSM 180]
 gi|288896791|gb|ADC62627.1| integrase family protein [Allochromatium vinosum DSM 180]
          Length = 398

 Score = 99.7 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 50/302 (16%), Positives = 92/302 (30%), Gaps = 16/302 (5%)

Query: 45  PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR 104
            A ++ +         +   + +  T + L   Y +    G    +           ++ 
Sbjct: 74  RAELAKVETQGADPLAVRQRQAQGETFRDLCQTYME--RHGQAKKSGTDDQRRIDRHLLP 131

Query: 105 KSGDFDYRKITTKHIRSGVES-RKHTPSSAIQFLTSMRVLFKWAVRQEYVA---INPCLS 160
             G      +T   + +      K  P  A + L  +  +F  A R  +V     NP   
Sbjct: 132 LWGSLKVPAVTRADVAALHSKIGKAHPYEANRVLALLSKMFDLARRWGFVPEGHPNPARD 191

Query: 161 VERPKRKTEGIRPW-TKEDMQQFKSFWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHL 217
           ++R K        W T E++ +     +E       F   LY  +G R S+  RA    +
Sbjct: 192 IDRFKEAKRDR--WVTPEELPRLAQAINEEPNQSARFGLWLYLLTGARKSELLRARWDDV 249

Query: 218 Q--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPI--GKETFFINNDKQKMNATQFSIWF 273
                   I   K G +  + L    + LL   P   G                    W 
Sbjct: 250 DWTRAELRIPDTKAGRVHYIPLSAAALALLREIPRVAGNPHILPGKLDGAHLVNINKPWD 309

Query: 274 KAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLG 332
           + +      +   H +R+   +  A AG + H +              Y + G D +R  
Sbjct: 310 RVRRAAGVEDVRVHDLRRTVGSWLAQAGNSLHLIGRVLNHSNQSTTAIYARFGEDSVRAA 369

Query: 333 IK 334
           ++
Sbjct: 370 LE 371


>gi|297748991|gb|ADI51537.1| Integrase/recombinase (XerC/CodV family) [Chlamydia trachomatis
           D-EC]
 gi|297749871|gb|ADI52549.1| Integrase/recombinase (XerC/CodV family) [Chlamydia trachomatis
           D-LC]
          Length = 308

 Score = 99.7 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 31/224 (13%), Positives = 71/224 (31%), Gaps = 23/224 (10%)

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
              K + ++  + L +++V F +    + +   P   +E PK         + E++    
Sbjct: 73  HKAKESETTLARRLIALKVFFHFLKDAKMLDQQPF--IEHPKIWKRLPSILSTEEVNSLL 130

Query: 184 SFWS--------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
                         S+          +G+R S+ C   +  + ++   +  +   T + V
Sbjct: 131 DQPLNIPNLDTHIASRDAAILYTFYATGIRVSELCDLCIGDISDDFIRVTGKGRKTRL-V 189

Query: 236 ELPDGFMKLLAM-----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284
            +     + +                 +E  F++   +K++ +         A      +
Sbjct: 190 PISIKAKQAIDAYLSSFRDELQKKNPSEEHVFLSIRGKKLDRSCVWKRITFYAKLVTTKR 249

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
            S H +R   AT   +  A    +    G   +   E YT  A 
Sbjct: 250 ISPHSLRHAFATHLLNNHADLRIIQEMLGHSRISSTEIYTHVAS 293


>gi|254426076|ref|ZP_05039793.1| Phage integrase, N-terminal SAM-like domain protein [Synechococcus
           sp. PCC 7335]
 gi|196188499|gb|EDX83464.1| Phage integrase, N-terminal SAM-like domain protein [Synechococcus
           sp. PCC 7335]
          Length = 326

 Score = 99.7 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 48/288 (16%), Positives = 100/288 (34%), Gaps = 26/288 (9%)

Query: 85  GSLAVNSRISFESYF----DQIIRKSGDFDYRKITT--KHIRSGVESRKHT--PSSAIQF 136
             LA N+R  +E       + + +      +R I    +H+++    R  +  P++  Q 
Sbjct: 39  RELAENTRKVYERQLRQFYEWVKKPWQQVTHRDIDRYKQHLKALPSKRGGSLSPATINQS 98

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF---KSFWSEGSQPR 193
           + S++  FKW   ++Y++ NP L++E+ K   +  +   + ++       ++  E     
Sbjct: 99  INSLKSFFKWLTVKDYISRNPTLTIEQLKDAPKPPKDLDEAEVDALFDGLNYRGESEVRD 158

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA------- 246
           LA   LL  GLR  +     ++        +   K G+   V L    +  L        
Sbjct: 159 LAILQLLSHGLRAGEVSALNIEDYDGKRVHVLGAKWGSDGKVPLKPEAIMALDSYLGWLV 218

Query: 247 ---MTPIGKETFFI----NNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISA 298
              M    +    +    N+  +++         K  A  + + +   H +R   AT   
Sbjct: 219 RQGMATTPESPLLVSLSRNSRGKRLGYRGIYDLVKELAAASELEDVHPHRLRHTCATSLV 278

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346
             G  +         K+      Y+  A  +++            DS 
Sbjct: 279 AQGMDSILAKRLVRIKSDRVFARYSDHALDMKMEEAFDELYGQSQDSR 326


>gi|81428201|ref|YP_395201.1| site-specific recombinase, prophage lsa1 integrase [Lactobacillus
           sakei subsp. sakei 23K]
 gi|78609843|emb|CAI54890.1| Site-specific recombinase, prophage lsa1 integrase [Lactobacillus
           sakei subsp. sakei 23K]
          Length = 385

 Score = 99.7 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 52/303 (17%), Positives = 101/303 (33%), Gaps = 47/303 (15%)

Query: 87  LAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESR-KHTPSSAIQFLTSMRVLF 144
           +  ++    +  F + I+   G +  R ITT  +++ +    K T  S   +      +F
Sbjct: 84  VRESTMYKQKKVFQNHILPAFGKYRIRTITTSQVQTTLNKWFKQTDYSFKPWFNYTSAIF 143

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIR--PWTKEDMQQFKSFWSE--GSQPRLAFEFLL 200
           K+A+ Q Y+  NPC  V  PK+  +      W K+ ++ F +        +    F  L 
Sbjct: 144 KYAILQGYIKDNPCTRVTMPKKLDKEDTLNFWDKDQLKTFFNGIDPVNDLEKYTLFRVLA 203

Query: 201 YSGLRCSDSCRAGVQHL----------------QNNIFSIKTQKTGTIITVELPDG---- 240
           ++G+R  +        L                      I+  KT     V   D     
Sbjct: 204 FTGIRRGECLSLTWDDLNVQKATLDINKTLTHGDKGRLLIQPTKTKKGTRVISLDESTLL 263

Query: 241 ------------FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---- 284
                       ++ L        +  F  +     +    S W +A    A  +     
Sbjct: 264 YLKKWHLEQRRMYLMLGYNINKSNQLIFATSKNTFKSLNTPSKWLRALIDDANKSGANLP 323

Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISS 341
             + HG R   A+    AGA+  E+    G +        YT   ++   G +  +++ +
Sbjct: 324 SITVHGFRHSHASALFSAGASIKEVQERLGHEDAQTTLNIYTHVTEKQ--GQEAVQKLVN 381

Query: 342 VVD 344
            ++
Sbjct: 382 FLN 384


>gi|310658536|ref|YP_003936257.1| site-specific integrase/recombinase [Clostridium sticklandii DSM
           519]
 gi|308825314|emb|CBH21352.1| putative site-specific integrase/recombinase [Clostridium
           sticklandii]
          Length = 334

 Score = 99.7 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 39/290 (13%), Positives = 96/290 (33%), Gaps = 41/290 (14%)

Query: 87  LAVNSRISFESYFDQIIRKSGDFDYRKITTK--HIRSGVESRKHTPSSAIQFLTSMRVLF 144
           L + +   + S  + + ++  D     I +   H+ S  ++      S  +    M++ F
Sbjct: 47  LDIKTFFDYCSISEILSQEITDIRPIHINSYYTHLVSVRDNNSI---SIKRKKYVMKLFF 103

Query: 145 KWAVRQEYVAINPCLS---VE-RPKRKTEGIRPWTKEDMQQFKSFW-----SEGSQPRL- 194
            +   Q  +  NP      ++ + K   +       E++++          +E ++ R  
Sbjct: 104 DFLEEQNEINKNPIPKDSVIKAKIKNPYKAPTYLEIEEIKKINKAILDTNKNEFTKIRNL 163

Query: 195 -AFEFLLYSGLRCSDSCRAGVQHLQNNIFS---IKTQKTGTIITVELP------------ 238
             F  L+++GLR +++    +   +  I +       K      + +             
Sbjct: 164 FIFNLLIHTGLRINEALNLDLSDFEQGINTNRLYVKGKGEKERYLPIELNSTFFQIYEEG 223

Query: 239 ------DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290
                 + +  L   T       FI+    ++ +       +     A +NK  + H +R
Sbjct: 224 FVYNFAERYFTLRNKTKTSNCALFISKRGDRLTSRYVQKNLQELRLSANLNKNVTPHKLR 283

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
              AT     G     +    G  ++   + YT   +   L  +  ++ +
Sbjct: 284 HTFATHLLKNGTNIRLVQELLGHSSISTTQIYTHS-NSKDL-DEAIKKFT 331


>gi|331680860|ref|ZP_08381500.1| shufflon-specific DNA recombinase [Escherichia coli H299]
 gi|331081848|gb|EGI53006.1| shufflon-specific DNA recombinase [Escherichia coli H299]
          Length = 389

 Score = 99.7 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 46/274 (16%), Positives = 95/274 (34%), Gaps = 19/274 (6%)

Query: 65  RKKPTTLKWLISEYRKSAHWGS---LAVNSRIS---FESYFDQIIRKSGDFDYRKITTKH 118
           + +  +L   + +Y K+        L    R++        D+ + +    D      + 
Sbjct: 6   KIRKMSLSRALDKYLKTVSVHKKGHLQEFYRVNVIKRHPMADRYMDEITTIDIAGYRDQR 65

Query: 119 IRSG--VESRKHTPSSAIQFLTSMRVLFKWA-VRQEYVAINPCLSVERPKRKTEGIRPWT 175
           +        R+ T ++    L  +  LF  A V      +NP   V +PK      R  T
Sbjct: 66  LAQINPRTGRQITGNTVRLELALLSSLFNIARVEWGTCRMNPVELVRKPKISNGRDRRLT 125

Query: 176 KEDMQQF-KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTGTI 232
             + ++  + F  +  Q  + F   L + +R  +      +HL     +  +   K G+ 
Sbjct: 126 SGEERRISRYFRDKNPQLYVIFHLALETAMRQGEILSLRWEHLDLQHGVAHLPETKNGSP 185

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRK 291
             V L       L + P       IN +     ++ F   ++       + N   H +R 
Sbjct: 186 RDVPLSRKARNYLQILPQQ-----INGNVFSYTSSGFKSAWRTALLDLKIENLHFHDLRH 240

Query: 292 FSATISADAG-ATAHELMATYGWKTVDQAETYTK 324
            + +   + G     E+ A  G ++++  + YT 
Sbjct: 241 EAISRLFELGTLNVMEIAAISGHRSLNMLKRYTH 274


>gi|289425363|ref|ZP_06427140.1| site-specific recombinase, phage integrase family
           [Propionibacterium acnes SK187]
 gi|289154341|gb|EFD03029.1| site-specific recombinase, phage integrase family
           [Propionibacterium acnes SK187]
          Length = 442

 Score = 99.7 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 58/373 (15%), Positives = 115/373 (30%), Gaps = 51/373 (13%)

Query: 23  YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSA 82
           +Y + G  +R+R      +         L            PR    TL   ++ +  + 
Sbjct: 49  FYDKNGTKQRVRGRGATRAEATKRLNKNLRQRIDGTRTATGPRGGL-TLNQWVNIWLATK 107

Query: 83  HWGS-LAVNSRISFE-SYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA-IQFLTS 139
                +   +    +  Y   I  K G    +++T + I+  + +      +  +    +
Sbjct: 108 QASEQMKPQTAQQHKIRYKQWIAPKLGSRPVKRLTAEEIQEVIAAGAQQGHAIPVNIFKT 167

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEG-------IRPWTK--EDMQQFKSFWSEGS 190
           M      AV+   V +NP   +  P++++         I  W++  + M ++ +      
Sbjct: 168 MNAALNSAVKAGEVDLNPMKQLTPPRQRSAAGEKDTAHIEYWSRIMDKMCKWLAQPECEL 227

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQ---------------KTGTII 233
             R      +  GLR ++             N  +IK Q               KTG   
Sbjct: 228 HDRYTLTIAMLLGLRRAELLGLTWDCFDECMNKLTIKQQLMRQNDGSYIIQNSTKTGKNR 287

Query: 234 TVELPDGFMK---------LLAMTPIGKETFFINNDKQKMNATQFSIWFKA----KATKA 280
           T+ LP+ + +         L A  P      F+      +    ++  ++        K 
Sbjct: 288 TLMLPERWKEAFLLQRQKSLTAAAPEWNNLVFLTPAGSPITYPMYNKLWRNTIVTYMAKE 347

Query: 281 GVNK-------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT-KGADRIRLG 332
           G            H  RK  A+  A  G      M+  G  +      YT   AD+ R  
Sbjct: 348 GQEWKEEQHYWRPHTCRKMCASWLAWGGVDIQTAMSILGHSSEAMTLYYTIINADQQRKA 407

Query: 333 IKNSRRISSVVDS 345
           ++    +    + 
Sbjct: 408 LEGLSNVYEHHNV 420


>gi|257870032|ref|ZP_05649685.1| phage integrase [Enterococcus gallinarum EG2]
 gi|257804196|gb|EEV33018.1| phage integrase [Enterococcus gallinarum EG2]
          Length = 390

 Score = 99.7 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 50/344 (14%), Positives = 111/344 (32%), Gaps = 52/344 (15%)

Query: 42  TFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGS-LAVNSRISFESYFD 100
               AY   +          +S +        L  E+ K   + + +  ++ +      +
Sbjct: 42  EAKQAYSRLMVKVQENDVVTDSNKL----FSELAEEWMK--QYKNTVKESTYVVQRLAME 95

Query: 101 -QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL 159
             I+   G+    KIT    +  V +     +     +     +FK+A+    V  NP  
Sbjct: 96  KHILPIFGELKISKITIPFCQKQVNNWYSYYTKYSNLIGLTSSVFKYAISLRLVRSNPMN 155

Query: 160 SVERPKRKTEGIR------PWTKEDMQQFKSFWSEGSQP-RLAFEFLLYSGLRCSDSCRA 212
            + RPKRK +          + K+++ +F        +P    F  L ++GLR  +    
Sbjct: 156 GIIRPKRKKKIDEEAFVAPYYAKDELLEFLDIVKAFPEPIYPMFRILAFTGLRKGELLGL 215

Query: 213 GVQHLQ---------------NNI-FSIKTQKT-GTIITVELPDG--------------- 240
             + +                +      +  KT  ++ T+ L D                
Sbjct: 216 RYKDIDFQNKTLSVKQTLATVDGWKLEFQVPKTEKSLRTISLDDETLKVIKKHMIKQKAF 275

Query: 241 -FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISA 298
                L     G++  F   + +       +   +    +  + + + HG R    ++  
Sbjct: 276 FLEHGLKTKENGEQLLFATFENKPYYLDFVNHNLERIIKEHNLKRITPHGFRHTHCSLLF 335

Query: 299 DAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISS 341
           ++GA+  E+ A  G   +    + Y   +   R   + + R ++
Sbjct: 336 ESGASIKEVQARLGHTDIKTTMDIYNHLS--KRQTEETANRFAN 377


>gi|332176048|gb|AEE25301.1| integrase family protein [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 286

 Score = 99.7 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 35/255 (13%), Positives = 82/255 (32%), Gaps = 15/255 (5%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLF 144
             L+  ++I +     ++            T + +R    +     +S I    ++  L 
Sbjct: 22  RRLSPKTQIGYIRGVKKLAAYL-KRSPEDATAEELRQFQLALAEQGASNITINATLSGL- 79

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF-KSFWSEGSQPRLAFEFLLYSG 203
           K+   +    ++  L V       +     +KE+++Q   +  +   + + AF     +G
Sbjct: 80  KFLFHKTLNLLDVMLKVSTVPVPRKLPTVLSKEEVKQLIDATHTI--KYKAAFSVAYGAG 137

Query: 204 LRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLAMTPIGKETF---FIN 258
           LR  +     V  + ++   ++    K        L     +               ++ 
Sbjct: 138 LRIGEVVALKVTDIDSSRMLLRIEQGKGKKDRMAMLLTTLCQWYKHAKAHHLMLNGGWLF 197

Query: 259 NDKQKMNA---TQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGW 313
             +  +N     Q S  +K+    AG+ K  S H +R   A    +       +    G 
Sbjct: 198 PGQNPLNPIGTRQLSRAWKSACIDAGLTKKVSMHTLRHSFAMHLLEDKVDIRVIQTLLGH 257

Query: 314 KTVDQAETYTKGADR 328
             ++    Y + A +
Sbjct: 258 SKLETTALYAQVASK 272


>gi|291557595|emb|CBL34712.1| Site-specific recombinase XerD [Eubacterium siraeum V10Sc8a]
          Length = 282

 Score = 99.7 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 42/274 (15%), Positives = 100/274 (36%), Gaps = 18/274 (6%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK---H 128
           K +    R  A   +L   +   + S     +R  G  +   +T +   S + +++    
Sbjct: 3   KDIFESIRNEAEKRNLRERTIQLYCSDVSYFLRWIG-KNVSDLTLEDAESFLTAKRLEGR 61

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           +P +   + ++++ L+K  ++  +       +V   KR+       +++++         
Sbjct: 62  SPETHNHYRSAIKFLYKKVLKILWDDD----TVPAMKRERNLPVVLSRDEINAIIDATP- 116

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL------PDGFM 242
             + +     +  SGLR S+        +     +I  ++T   I           D   
Sbjct: 117 NLKHKAIIATMYSSGLRVSEVVHLHYDDISRTNMTIHVRETKGRIDRYTILSQKNLDLLT 176

Query: 243 KLLAMTPIGKETFFINND-KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
           +        K+  F ++     ++    + +FK  A  AG+N+  S+H  R   A+   +
Sbjct: 177 EYWYKCGRPKDILFPSSWSGGYLDIASVNQFFKKSAKLAGINRHVSSHACRHSFASHLFE 236

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           +G     + +  G       + Y   +++  LGI
Sbjct: 237 SGTDIKYIQSLLGHVDPRSTDVYLHVSNKTLLGI 270


>gi|283479897|emb|CAY75813.1| Tyrosine recombinase xerD [Erwinia pyrifoliae DSM 12163]
          Length = 351

 Score = 99.7 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 44/289 (15%), Positives = 105/289 (36%), Gaps = 32/289 (11%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFE---SYFDQIIRKSGDFDYRKITTKHIRSGV--- 123
           TL+ L   +         +  +   +      F       G     +++   + +     
Sbjct: 20  TLRQLAESWLAHLVVAGRSARTAQGYGERVXAFLAWCEPRGITYAPQVSLAVLEAYQRWL 79

Query: 124 ------ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI-RPWTK 176
                 + ++   +S +  L+++R+LF+W +++ ++  +P   +E PK +     + +++
Sbjct: 80  QGYRRADGKQLVVNSQLHRLSAVRMLFRWLLKRHHILYSPAEQLELPKEERRLPAQVFSE 139

Query: 177 ED----MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTG 230
            +    +Q   +    G + R   E L  SG+R S+     +  +     + +++  K G
Sbjct: 140 AETRRVLQSLDAGTPPGLRXRAILELLWSSGIRRSELAGLLLSDVDFTRGVVNVRRGKGG 199

Query: 231 TIITVEL----PDGFMKLLA------MTPIGKETFFINNDKQKMNATQFSIWF-KAKATK 279
               V +         + L                FI++    +     +    +A  + 
Sbjct: 200 KDRVVPVGHTALMWLXRYLKDVRPRLAQRFDSGHLFISHKGTGLAHGTLTAMAGRAIRSG 259

Query: 280 AGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           A + K+   H  R   AT   + GA    + A  G + ++  + YT+ A
Sbjct: 260 AHLKKAGACHIFRHXMATQMLENGADTRHIQAILGHEKLETTQIYTRVA 308


>gi|163753743|ref|ZP_02160866.1| tyrosine type site-specific recombinase [Kordia algicida OT-1]
 gi|161325957|gb|EDP97283.1| tyrosine type site-specific recombinase [Kordia algicida OT-1]
          Length = 428

 Score = 99.7 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 38/250 (15%), Positives = 87/250 (34%), Gaps = 16/250 (6%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHTPSSAIQFLTSMR 141
             + ++   ++S+          ++ ++IT + IR+ +    + R+ + S   Q + +++
Sbjct: 165 RYSESTIKIYKSFLSIFFTYHYAYEPQEITNEMIRTYMRYLVQEREISESYQNQMINAIK 224

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201
             +     +          ++RPKR        ++++  Q         + +     +  
Sbjct: 225 FYY----EKVLGGKQQTYFIDRPKRSKPLPIVLSQKETIQLLKSIP-NLKHKTILTVIYS 279

Query: 202 SGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVEL---PDGFMKLLAMTPIGKETFF 256
            GLR S+     +   +L+ N   I   K      V L       +K+       +    
Sbjct: 280 CGLRVSELIDLKLSSIYLEENKIHIVAGKGKKDRYVTLAVRTKKLIKIYIKKYAPEHYLI 339

Query: 257 INNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWK 314
                 K   +    + K  + +AG+ K  + H +R   AT   + G +   +    G +
Sbjct: 340 EGQKGGKYATSSIQKFIKKYSNEAGLTKNVTPHTLRHSFATHLLEKGISLRYIQYILGHQ 399

Query: 315 TVDQAETYTK 324
                E YT 
Sbjct: 400 NSKTTEIYTH 409


>gi|319955952|ref|YP_004167215.1| integrase family protein [Nitratifractor salsuginis DSM 16511]
 gi|319418356|gb|ADV45466.1| integrase family protein [Nitratifractor salsuginis DSM 16511]
          Length = 284

 Score = 99.7 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 42/252 (16%), Positives = 88/252 (34%), Gaps = 11/252 (4%)

Query: 85  GSLAVNSRISFESYFDQIIRKSG-DFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL 143
              +  +  ++E    Q+++      + +++    +        +TP +  + L+++R  
Sbjct: 16  RGYSERTVATYELPLRQMLQYHRLKREGKQLILDIMPLRRRIASNTPRTVAKKLSAVRSF 75

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203
            ++   Q  ++I      E  K      +P  +  +++           RL    L   G
Sbjct: 76  VRYLQDQRNLSI-LLEGDESVKVPRTLPKPIEERYIREVLEAADP--TERLILGLLYGMG 132

Query: 204 LRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG----FMKLLAMTPIGKETFFINN 259
           LR S+      + +      I   K G    + LP          LA+ P G   +    
Sbjct: 133 LRISELAGLRREQIDREWIRIH-GKGGKTRQLPLPQAVLQMLDHYLALHPAG--VYLFEK 189

Query: 260 DKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
            K  ++A Q     +      G+  + H +R   AT   D GA   ++    G  ++   
Sbjct: 190 GKAPLSAAQIRYRVQKLFRSRGIKATPHQLRHSFATHLLDHGARISDVSELLGHASMATT 249

Query: 320 ETYTKGADRIRL 331
           + YT+     +L
Sbjct: 250 QIYTQLGSSRKL 261


>gi|329848271|ref|ZP_08263299.1| phage integrase family protein [Asticcacaulis biprosthecum C19]
 gi|328843334|gb|EGF92903.1| phage integrase family protein [Asticcacaulis biprosthecum C19]
          Length = 442

 Score = 99.7 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 53/377 (14%), Positives = 101/377 (26%), Gaps = 80/377 (21%)

Query: 19  GKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALT-------GSTPKREYINSPRKKPT 69
           G+ +Y   +R G  +RI     H S + P              G+           +   
Sbjct: 42  GRKVYAVKYRLGKAQRIFTIGTHGSPWTPEKAREKATAVLKDVGNNIDPAAEKLADRHAM 101

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESY---------FDQIIRKSGDFDYRKITTKHIR 120
           T+  L+ EY            ++ +  +             II   G     ++T +   
Sbjct: 102 TVADLVKEY------IERGPQTKANKRAVSWAADESCLRRHIIPTVGKDAADRLTNEGAA 155

Query: 121 SGVES----------RKHTPSS----------AIQFLTSMRVLFKWAVRQEYVAINPCLS 160
             + +          +   P            A +  +    +F W ++   V  NP   
Sbjct: 156 KAIYAIRMGKTAVVEKSDKPRGKAVVTGGEAVARRTRSVAAAMFAWGIKHGLVKRNPFTG 215

Query: 161 VERPKRKTEGIRPWTKED----MQQFKSFWSEGSQPRL---AFEFLLYSGLRCSDSCRAG 213
           ++ P    +  R  ++ +    +       +EGS  R+   A   LL +G R S+     
Sbjct: 216 IDLPAAPVKE-RFLSQAEAGAFLDALAGLEAEGSVDRVYGDALRLLLLTGARKSEIANLT 274

Query: 214 VQ--HLQNNIFSIKTQ------KTGTIITVELPDGFMKLLAMTPIGKETF---------- 255
                       +  +      KTG    + +P     L        +            
Sbjct: 275 WSEVDFDRRCLVLPPERTKAGGKTGERRIMLMPAALEILSRRYKARSDYVGIDGKPLDLP 334

Query: 256 -------FINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHEL 307
                   +N     +        F      A +     H +R   A+ +   GA+   +
Sbjct: 335 LVFPSPRTLNTTGGPIV--GLRRIFAKACLAADIKGVRLHDMRHSFASFAVAGGASLFLV 392

Query: 308 MATYGWKTVDQAETYTK 324
               G       E Y  
Sbjct: 393 SKLLGHSNSRTTERYAH 409


>gi|298252084|ref|ZP_06975887.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
 gi|297546676|gb|EFH80544.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
          Length = 362

 Score = 99.7 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 42/296 (14%), Positives = 88/296 (29%), Gaps = 45/296 (15%)

Query: 72  KWLISEYRK---SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG---VES 125
            W + EY +   SAH  ++   S + +    ++I +  G+   + +    I+     +  
Sbjct: 42  AWTVQEYLEYWLSAHGPTIRAISLMGYRHAVNRINKIVGNVKLKALKADKIQLAYGTMLK 101

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
               P +     T   +    AV  EY+  NP   V  PK           ++ ++    
Sbjct: 102 NGFKPRTIQTTHTIFAIALNDAVDWEYLPSNPASKVTPPKAGKREYTLLDMDEAKRLIDA 161

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---------------------NNIFSI 224
             + +  R      + +G+R ++        +                        I   
Sbjct: 162 AGD-TPIRAIIALAVGTGMRKAEITALKWSSIDLDAKKLYVAEGAVYVKLDETPGQIVEN 220

Query: 225 KTQKTGTIITVELPDGFMKLLAMTP--------------IGKETFFINNDKQKMNATQFS 270
             + +    ++ LPD  +  L                  +     F N     +     +
Sbjct: 221 DPKTSSGRRSLTLPDFVIDELRAHKIRQKEQRLKAGAAWVDHGLVFTNRRGGHIYV-SIN 279

Query: 271 IWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTK 324
             FK    +AG+ +   H +R   A+I    G     +    G  ++      Y+ 
Sbjct: 280 EMFKRVLAQAGLPDMRLHDLRHSLASILLAMGVHPKVVQEILGHSSITITMNIYSH 335


>gi|116254158|ref|YP_769996.1| site-specific tyrosine recombinase XerC [Rhizobium leguminosarum
           bv. viciae 3841]
 gi|115258806|emb|CAK09912.1| putative tyrosine recombinase [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 299

 Score = 99.7 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 53/278 (19%), Positives = 91/278 (32%), Gaps = 29/278 (10%)

Query: 82  AHWGSLAVNSRISFESYFDQIIRKS-GDF-------DYRKITTKHIRSGVESRKHTPSSA 133
           A    L+ ++  ++E    Q +    G         D R++     R+ + +R+   S A
Sbjct: 12  ARERRLSEHTLDAYERDTRQFLTFLTGHLAGPATLRDIRELRPADFRAFLAARRKQGSGA 71

Query: 134 IQF---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK-------EDMQQFK 183
                 L  +R L +   ++  V      +V  PK+     +P +         D  Q  
Sbjct: 72  RSLGRNLAGLRSLLRHLEKKGLVNAAGAAAVRSPKQPKSLPKPLSDTQAITVVSDEAQLH 131

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELP---- 238
                 ++       L   GLR S++       LQ    +++ T K      V L     
Sbjct: 132 DEPWIAARDAAVMTLLYGCGLRISEALDLTPADLQKGATTLRITGKGNKTRLVPLLSVVF 191

Query: 239 DGFMKLLAMTP---IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFS 293
           D   K  A+ P      E  F      K+ A       +   +  G+    + H +R   
Sbjct: 192 DAVEKYRALCPYHLESGEPLFRGARGGKLQAAIIQRTMQKMRSAFGLPETATPHALRHSF 251

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           AT     G     +    G  ++   + YT G D  RL
Sbjct: 252 ATHLLAGGGDLRTIQELLGHASLSTTQVYT-GVDASRL 288


>gi|315221512|ref|ZP_07863432.1| site-specific recombinase, phage integrase family [Streptococcus
           anginosus F0211]
 gi|315189346|gb|EFU23041.1| site-specific recombinase, phage integrase family [Streptococcus
           anginosus F0211]
          Length = 382

 Score = 99.7 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 45/313 (14%), Positives = 104/313 (33%), Gaps = 40/313 (12%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
            + L   + +S            +  +    I    G+    KIT   I+  +       
Sbjct: 70  FQELADIWLESYKLTVKPQTYEATLSNLRTHIYPVFGNRQLDKITASDIQVFINQLSRYF 129

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI----RPWTKEDMQQFKSFW 186
            + +   + +R +F+  +  + V  NP   +  P+R+ +      +    +D++ F    
Sbjct: 130 ENFVTIRSIIRRIFQQGILLQLVTNNPARDIILPRRQKKADDNKVKFIAPDDLKAFLDNL 189

Query: 187 SEGSQPR-------LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT---------- 229
            +    R       + +  LL +GLR  + C      +  +  +I   KT          
Sbjct: 190 EKKQYKRYGLYYEYVLYHLLLSTGLRIGEVCALEWTDIDLDKSTITVNKTYNKGLKAVST 249

Query: 230 ----GTIITVELPDGFMKLLAMTP-IGKETFFINNDKQKM------NATQFSIWFKA--- 275
                   T+ +    + +L +     ++ FF    +             F +  +    
Sbjct: 250 AKTKSANRTISIDKKTVNMLRLYKNRQRQLFFETGARAPSVVFATPTREYFDLAIRQSAL 309

Query: 276 --KATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK-GADRIR 330
             +  +AG+ + + H  R   A++  +AG +  EL    G   +    + Y+    D+ +
Sbjct: 310 DTRCKEAGIPRFTFHAFRHTHASLLLNAGISYKELQYRLGHANITMTLDIYSHLSRDKEK 369

Query: 331 LGIKNSRRISSVV 343
             +    +  S +
Sbjct: 370 EAVAYFEKAISSL 382


>gi|291482891|dbj|BAI83966.1| hypothetical protein BSNT_00830 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 368

 Score = 99.7 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 57/329 (17%), Positives = 98/329 (29%), Gaps = 36/329 (10%)

Query: 25  FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHW 84
           F    G RIR      +      + A      + E     R    +   LIS Y  +   
Sbjct: 19  FDPITGERIRTRPVASTRKEALELEAKLRREFQEERARKSRSV--SFPTLISIYLANCEI 76

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTK---HIRSGVESRKHTPSSAIQFLTSMR 141
            S     +         I       D +KIT +     R  +     +  S    +TS+ 
Sbjct: 77  DSKPNYYQNQKYIINKHISDYFLKSDIQKITHREITDFRKHLMETGLSNKSVNNIMTSLS 136

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP-RLAFEFLL 200
            +F  AV +E +  NPC +V+R     + ++ W  E+ ++F S   +     +  +    
Sbjct: 137 KIFDTAVHEEILKRNPCDNVKRLPLTRKKMKFWRPEEFKKFISLIPQDQLLFKTFYTVAF 196

Query: 201 YSGLRCSDSCRAGVQHLQ---------------NNIFSIKTQKTGTII-TVELPDGFMKL 244
            +GLRC +      + +                +  F + T KT   I  V +    +KL
Sbjct: 197 LTGLRCGEMLALQWKDIDKILLEIDVHKSCTWLDGQFVVTTPKTKNSIRRVSINKKLLKL 256

Query: 245 LAMTP-------------IGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVR 290
           L                    +T+             FS   K     + +     H  R
Sbjct: 257 LESWKEAQEELFNELGIRHSHDTYIFQYKDTPSRKDIFSRKIKYFCKDSDLTPIRLHDFR 316

Query: 291 KFSATISADAGATAHELMATYGWKTVDQA 319
                +    G     +    G  +V   
Sbjct: 317 HSHVALLIHQGEDYITIKERLGHGSVKTT 345


>gi|125973032|ref|YP_001036942.1| phage integrase [Clostridium thermocellum ATCC 27405]
 gi|125713257|gb|ABN51749.1| phage integrase [Clostridium thermocellum ATCC 27405]
          Length = 506

 Score = 99.7 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 40/243 (16%), Positives = 76/243 (31%), Gaps = 44/243 (18%)

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
           S+  +P+S ++   ++R   + A     +  NP   +ERPK++      +T E++ +   
Sbjct: 236 SKGLSPNSVLRRHANIRKALQHAFHLGLIKSNPADRIERPKKQDYTASYYTDEELAKLFK 295

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--------------------NNIFSI 224
               G    L      Y GLR S+        +                     +   ++
Sbjct: 296 AAK-GDPLELPIVLAAYYGLRRSEIIGLRWDAIDFNPDDPKITIQFTVTEVNFGDGQGNV 354

Query: 225 KTQKTG-----TIITVELPDGFMKLLAMTPIG----------------KETFFINNDKQK 263
             +K G     +  T+ L      LL                       +   +N   ++
Sbjct: 355 IIEKEGTKSKASKRTLPLVKPIADLLLQKKKDIENNRRLCGSCYNDKYLDFVHVNEIGER 414

Query: 264 MNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-T 321
           M     S  F     K G+ K   H +R   A++    G +  ++    G   +      
Sbjct: 415 MKPNYISQHFALLLEKHGLKKIRFHDLRHSCASLLYANGVSLKQIQEWLGHSDISTTANI 474

Query: 322 YTK 324
           YT 
Sbjct: 475 YTH 477


>gi|258654185|ref|YP_003203341.1| tyrosine recombinase XerD [Nakamurella multipartita DSM 44233]
 gi|258557410|gb|ACV80352.1| tyrosine recombinase XerD [Nakamurella multipartita DSM 44233]
          Length = 353

 Score = 99.7 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 46/330 (13%), Positives = 91/330 (27%), Gaps = 62/330 (18%)

Query: 56  PKREYINSPRKKPTTLKWLISEYRKS-AHWGSLAVNSRISFESYFDQ---IIRKSGDFDY 111
           P RE + SP +    L   +  Y         +A N+ +S+    ++    +  +G    
Sbjct: 5   PAREAVASPVEPSPELVAALRGYLDHLVVERGVARNTVLSYRRDLNRYLQFLAAAGRTRV 64

Query: 112 RKITTKHIRSGVESRKHTP--------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163
             +T   +   +   +           SSA + + + R   ++ + +     +P   V  
Sbjct: 65  ADVTAADVSDFLVCLRTGADGRPPLAASSAARAVVAARGWHRFLLNEGTAEADPSRDVHP 124

Query: 164 PKRKTEGIRPWTKEDMQQFKSFW-------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216
           P       +    E + +              G + R   E L  +G R S+     V  
Sbjct: 125 PTPARRLPKALPVEAIGRLLDAAGSADPDGPRGLRDRALLELLYATGARISEVVGLDVDD 184

Query: 217 LQNNIFSIKTQ-------------------------KTGTIITVEL-------------- 237
           +      +  +                         K      V +              
Sbjct: 185 IDLGPGRLAGRSSTDPTDPTDPQVAPPITSVVRLHGKGAKERLVPVGSFALRALEAYLVR 244

Query: 238 -PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFS 293
                          +   F+N    +++           A +AG+     S H +R   
Sbjct: 245 GRPVLAAAGRGAGPARGALFLNIRGGRLSRQSAWQVLADAARRAGLPASGVSPHTLRHSF 304

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYT 323
           AT   + GA    +    G  +V   + YT
Sbjct: 305 ATHLLEGGADVRSVQELLGHASVTTTQIYT 334


>gi|84625422|ref|YP_452794.1| site-specific tyrosine recombinase XerC [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|84369362|dbj|BAE70520.1| site-specific recombinase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 305

 Score = 99.7 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 39/267 (14%), Positives = 90/267 (33%), Gaps = 27/267 (10%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDF-------------DYRKITTKHIRSGV---ESRKH 128
             ++ ++  ++      ++  +G+              D  ++ + H+R  V     R  
Sbjct: 15  RQVSAHTLDAYRRDLAALVAWTGERNAEDGAQQTATPVDSAQLDSAHLRQFVAAEHRRGL 74

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF--- 185
           +P S  + L++ R  + W ++   +A +P  ++  PK + +  +    ++  +       
Sbjct: 75  SPKSLQRRLSACRSYYAWLLKHGRIAASPAAALRAPKAQRKLPQVLDADEAVRLVEVPTD 134

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKL 244
              G + R   E    SGLR S+ C    + L  ++   +   K      V +    +  
Sbjct: 135 APLGLRDRALLELFYSSGLRLSELCALRWRDLDLDSGLVMVLGKGSKQRLVPVGSHAIAA 194

Query: 245 LAM-----TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS 297
           L               F       ++     I  K  A + G+  +   H +R   A+  
Sbjct: 195 LRQWRRDSGASADAHVFPGRAGGAISQRAVQIRIKQLAVRQGMFKDVHPHMLRHSFASHI 254

Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324
            ++      +    G   +   + YT 
Sbjct: 255 LESSGDLRGVQELLGHSDIATTQIYTH 281


>gi|224371854|ref|YP_002606020.1| Phage integrase family protein [Desulfobacterium autotrophicum
           HRM2]
 gi|223694573|gb|ACN17856.1| Phage integrase family protein [Desulfobacterium autotrophicum
           HRM2]
          Length = 360

 Score = 99.7 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 60/345 (17%), Positives = 117/345 (33%), Gaps = 34/345 (9%)

Query: 16  TRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75
            R  + +  F    G+R  +  P  +T   A                   KK  T   + 
Sbjct: 6   KRRDRYVLDFYDLEGKRKWITMPKGTTLKAAKEELRKVEDDLATGNYISPKKTPTFDQVA 65

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP---SS 132
            E+       ++  ++   +E +      +  +    +IT + +   +  R+      S+
Sbjct: 66  QEWLDHKK-MNIRASTWAVYEGHTKNHFPEFKNLKIHQITIQRVEKFITDRQAAGMNLST 124

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG------IRPWTKEDMQQFKSFW 186
             + L S+R +F  AV++ Y   NP    + PK + E       I+  T + +  F    
Sbjct: 125 LRKILVSLRQIFNLAVKRGYCPRNPLDYADMPKSQGEETDGADKIQILTHDQITAFLEVV 184

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIK----------TQKTGTIIT 234
           +E  +  + F   ++SG R  +        +   ++   I+          T+  G+   
Sbjct: 185 TE-QKYHVLFSLAIFSGARQGELLGLKWSDILWGDSQIHIQRSFNNQRFYDTKTKGSNRK 243

Query: 235 VELPDGFMK-----LLAMTPIGKETFFINNDKQKMNATQFSIW-FKAKATKAGVNK-SAH 287
           +++    +K      LA  P G +  F       MN        F      A + +   H
Sbjct: 244 IDIGPVMLKKLKKWRLACPPGGLDLVFPTAKGNPMNHNNMVNRYFLPGLKAAKLERIRFH 303

Query: 288 GVRKFSATISADAGATAHELMATYGWK----TVDQAETYTKGADR 328
            +R   A++  D G     + A  G      T++      KG +R
Sbjct: 304 DMRHTYASLLIDQGENIKYIQAQLGHSNPTVTLNVYAHLMKGTNR 348


>gi|317133822|ref|YP_004089733.1| integrase family protein [Ruminococcus albus 7]
 gi|315450284|gb|ADU23847.1| integrase family protein [Ruminococcus albus 7]
          Length = 326

 Score = 99.7 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 83/223 (37%), Gaps = 17/223 (7%)

Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
           +    + R++  S+  +  TS++  + + A + + +  +  +S+E P  K    +  + +
Sbjct: 83  MVWLKDERQNGASARARKTTSLKQFYDYLANKAQLIPKDNMVSLEVPHVKRALPKYLSLD 142

Query: 178 DMQQFKS--FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
           ++Q+  S        +        L  G+R S+ C   +  +     +++    G    +
Sbjct: 143 EVQKLLSSIRTKNTERDYCIITLFLNCGMRLSELCGININDISFENKTLRLMGKGKKERI 202

Query: 236 -----ELPDGFMKLL-----AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-- 283
                   D   K L           ++  F+++ K +++  +     +     AG+   
Sbjct: 203 ITLNNNCLDAIEKYLPYRKNYEMAQNEKALFLSSRKNRLSRRRVQKIIEECIMDAGLKNT 262

Query: 284 -KSAHGVRKFSATISADA-GATAHELMATYGWKTVDQAETYTK 324
             + H +R  +AT+  +  G     +    G ++    E YT 
Sbjct: 263 GVTTHKLRHTAATLMYNNNGGDILAVKEILGHESTATTEIYTH 305


>gi|15834875|ref|NP_296634.1| site-specific tyrosine recombinase XerD [Chlamydia muridarum Nigg]
 gi|34223084|sp|Q9PL53|XERD_CHLMU RecName: Full=Tyrosine recombinase xerD
 gi|7190294|gb|AAF39124.1| integrase/recombinase XerD [Chlamydia muridarum Nigg]
          Length = 301

 Score = 99.7 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 70/224 (31%), Gaps = 23/224 (10%)

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
              K + ++  + L +++V F +    + +   P   +E PK         + E++    
Sbjct: 65  HQAKESETTLARRLIALKVFFHFLKDAKLIHQQPF--IEHPKVWKRLPSILSTEEVNSLL 122

Query: 184 SF--------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
           +             ++          +G+R S+ C   +  + ++   +  +   T + V
Sbjct: 123 NQPLNTLNLDAYIANRDTAILYTFYATGIRVSELCDLCIGDISDDFIRVTGKGRKTRL-V 181

Query: 236 ELPDGFMKLLAMTPI-----------GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284
            +     + +                 +E  F++   +K+  +         A       
Sbjct: 182 PISIKARQTIDSYLTMFRERFQKKNPSEEHVFLSIRGKKLERSCVWKRITFYAKLVTTKH 241

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
            S H +R   AT   +  A    +    G   +   E YT  A 
Sbjct: 242 ISPHSLRHAFATHLLNNQADLRIIQEMLGHARISSTEIYTHVAS 285


>gi|318604128|emb|CBY25626.1| putative bacteriophage integrase [Yersinia enterocolitica subsp.
           palearctica Y11]
          Length = 351

 Score = 99.7 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 50/314 (15%), Positives = 107/314 (34%), Gaps = 31/314 (9%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87
             GRRIR  +  +   + AY   +     ++ ++   ++   T+  L+  + + AH  +L
Sbjct: 20  RDGRRIRKQFSTKGEAL-AYERHVKDEAEQKPWLG-DKQDKRTVSDLVDTWHR-AHGVTL 76

Query: 88  AVNSRI------SFESYFDQIIRKSGDFDYRKITTKHIRSGVES----RKHTPSSAIQFL 137
               R       ++ES    +  +     + +   K +   ++     +K +P +    L
Sbjct: 77  EDGDRRKDAMTYAYESMGKPLATEFNAKLFSQYREKRLSGELQRNTRVKKVSPRTVNLEL 136

Query: 138 TSMRVLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW--SEGSQPRL 194
              R +F   +R  E+ A +P  +V   +     +     E++         S  S    
Sbjct: 137 AYFRAMFNELIRLDEWKAEHPLKNVRPYRTDESEMAFLRLEEIDTLLKECANSSASDLLT 196

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254
             +  L +G R S++    +  +  +  +    K     T+ + +  +K +     G+  
Sbjct: 197 VVKICLATGARWSEAESLSLSQITKDRITFIKTKGKKNRTIPVSEELIKSIPKKESGEPL 256

Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGVNKSA----HGVRKFSATISADAGATAHELMAT 310
           F                 F+    +A +N  A    H +R   A+    AG     L   
Sbjct: 257 FV-----------SCYSAFRTALKRAKINLPAGQLSHVLRHTFASHFMMAGGNILVLQRI 305

Query: 311 YGWKTVDQAETYTK 324
            G   +     Y+ 
Sbjct: 306 LGHTDIKMTMRYSH 319


>gi|315924314|ref|ZP_07920537.1| tyrosine recombinase XerC [Pseudoramibacter alactolyticus ATCC
           23263]
 gi|315622385|gb|EFV02343.1| tyrosine recombinase XerC [Pseudoramibacter alactolyticus ATCC
           23263]
          Length = 355

 Score = 99.7 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 50/303 (16%), Positives = 97/303 (32%), Gaps = 53/303 (17%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG--------DFDYRKITT---------- 116
           +++Y  SA     ++N+  S+++   Q  R           D  +  I            
Sbjct: 38  LADYLISA--KGYSLNTIRSYQNDLIQFFRFLRRRFGQVDRDCPFEAIDISPIDFSLLSA 95

Query: 117 ---KHIRSGVESRKHTPSSAIQFLT----SMRVLFKWA-VRQEYVAINPCLSVERPKRKT 168
                I + +        +          ++R L+ +  V  +    +P  ++E PK K 
Sbjct: 96  VQLADIYAFLGYASVQRGNGNTTRKRKTAAIRALYHYLTVVLQLDMSDPTQNLEVPKIKQ 155

Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226
                 T ++     +     ++ R        L  G+R S+     ++ +Q+    I  
Sbjct: 156 RDPIYLTLDEAMSLLNAIDGRNKERDLAIVTLFLNCGMRLSELTNLRLKDIQDETLHI-V 214

Query: 227 QKTGTIITVELPDGFMKLLAMT-PIGK-----------------ETFFINNDKQKMNATQ 268
            K      V L D  +  L    PI K                 +  F+++  + ++   
Sbjct: 215 GKGNKERDVILNDACVNALEAYYPIRKQQIERIEAQSDKVVKVDDHLFLSSRGRGISNRM 274

Query: 269 FSIWFKAKATKAGVNK---SAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTK 324
                     KAG++    + H +R  +AT+    G      L    G + V   E YT 
Sbjct: 275 VEGMVHKYILKAGLDANKITVHKLRHTAATLMYKYGQVDIRTLQKVLGHENVSTTEIYTH 334

Query: 325 GAD 327
             D
Sbjct: 335 IED 337


>gi|228911396|ref|ZP_04075196.1| Prophage LambdaBa04, site-specific recombinase, phage integrase
           [Bacillus thuringiensis IBL 200]
 gi|228848231|gb|EEM93085.1| Prophage LambdaBa04, site-specific recombinase, phage integrase
           [Bacillus thuringiensis IBL 200]
          Length = 356

 Score = 99.7 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 52/314 (16%), Positives = 98/314 (31%), Gaps = 56/314 (17%)

Query: 84  WGSLAVNSRI-----SFESYFD----QIIRKSGDFDYRKITTKHIRSGVESRKHTP---S 131
           W  L    +      S+E         I+   G    + I    I+S     K       
Sbjct: 47  WEKLKPIRKAELKITSYEKDISLVKLYILPTFGYKKIKSIKPVIIQSYYAELKEKGLSNG 106

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           +        R +FK AV  E +  N    V++P+ +   ++ W+ E+  +F  +  E ++
Sbjct: 107 TISNIHRCFRCIFKHAVEWEILHDNIMNKVKKPREEQVEMKTWSSEECNRFLHYLKEKNK 166

Query: 192 PRLAFEFL-LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP- 249
               F  L +Y+G+R  +      + +  +   I   K+     V+  +G  K    T  
Sbjct: 167 KYYMFFLLAIYTGMRRGELLALTWKDIDFDNQRILVNKS----LVKTEEGLFKAATKTKS 222

Query: 250 ------IGKETFFINNDKQKMNATQFSIW----------------------------FKA 275
                 I                 +F  W                             K 
Sbjct: 223 SNRSISISSFVVIELQTYYLYKKKEFFRWGISLNEEAYIFAGNTIHSPLHIDAPHRFLKD 282

Query: 276 KATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGI 333
              KAGV +   H +R   AT+   AG     +    G  ++    + Y+       +  
Sbjct: 283 HYKKAGVPRIRIHDLRHTHATLMLQAGEHPKIVQDRLGHSSIQMTLDKYSHITQ--NMQQ 340

Query: 334 KNSRRISSVVDSDD 347
           + +    S++ S++
Sbjct: 341 QAAENFESIIKSNE 354


>gi|222152421|ref|YP_002561596.1| phage integrase [Streptococcus uberis 0140J]
 gi|222113232|emb|CAR40731.1| putative phage integrase [Streptococcus uberis 0140J]
          Length = 381

 Score = 99.7 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 46/322 (14%), Positives = 115/322 (35%), Gaps = 43/322 (13%)

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRS 121
           S + +  T K L   +  +    +L   S  S  S  +  I+   G     KIT+  +++
Sbjct: 62  SKKVQVKTFKDLTDMWLVNYK-LTLKPQSYNSTVSMLNKHILPYFGKMKLDKITSSDVQT 120

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV---ERPKRKTEGIRPWTKED 178
            + S      + +   + +  + +  V  + +  NP   +    + K+ ++ ++   K+D
Sbjct: 121 FINSLSKKTINYVNARSIISRILQHGVLLQLIQHNPARDIVLPRKQKKDSDKVKFIEKDD 180

Query: 179 MQQFKSFWSEGSQ-------PRLAFEFLLYSGLRCSDSCRAGVQHLQ------------- 218
           +++F  +  +            + ++ LL +GLR  ++C      +              
Sbjct: 181 LKKFLDYIEKYKLRNYKTNFNYVLYKLLLATGLRIGEACALEWSDIDLINGTINIDKTYS 240

Query: 219 --NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK-------MNATQF 269
                 S    K+GT + + +    + +L +  + +   F     +             F
Sbjct: 241 KSIRRLSTTKSKSGTRL-ISIDQATVNMLKLYQVRQRQLFHEVGGKAPKVVFATPTRKYF 299

Query: 270 SIWFK-----AKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETY 322
             + +         +AG+ + + H  R   A++  +AG +  EL    G   +    + Y
Sbjct: 300 HTFVRQNALDRACIEAGIPRFTFHAFRHTHASLLLNAGISYKELQYRLGHSNIAMTLDVY 359

Query: 323 TK-GADRIRLGIKNSRRISSVV 343
           +    D+ +  +    +  + +
Sbjct: 360 SHLSKDKEKEAVSYFEKAINSI 381


>gi|167618213|ref|ZP_02386844.1| phage integrase family protein [Burkholderia thailandensis Bt4]
          Length = 448

 Score = 99.7 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 69/367 (18%), Positives = 124/367 (33%), Gaps = 28/367 (7%)

Query: 9   PFVTKERTRHGKII----YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64
           P    + T HG+ +    Y    G  R+ ++    E T   A   A       R+  +  
Sbjct: 29  PGFLCKVTAHGRKVFMLQYRTNWGERRKPKIGQFGELTVEQARSIAQDWLADVRKGNDPS 88

Query: 65  RKKPT-----TLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKH 118
             K       T+K L +++ +         ++  +++   D+ I+   G      +T +H
Sbjct: 89  AAKLAARMSPTVKELCTQFMEEYSRPRNKPSTVDTYQDQIDRFIVPMLGKLKVPDVTRQH 148

Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI--NPCLSVERPKRKTEGIRPWTK 176
           I + +      P +A + L+ +R +F  A    Y     NPC  V +     E  R    
Sbjct: 149 ITTLMRDLAKIPVTANRVLSCIRKMFNMAEVWGYRPDGSNPCRHVPKYPENGE-TRYIVN 207

Query: 177 EDMQQFKSFWS-------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ 227
           +++ +  ++         E     LA         R S+        +   N        
Sbjct: 208 DELARLYTYLDRADAEGLEHPTLTLAVRLQFEFSARMSEIRLLEWSWIDFENRRIVWPDS 267

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFF---INNDKQKMNATQFSIWFKAKATKAGV-N 283
           KTG I        +  L     I    +    I +    +  + +   +K    +A V +
Sbjct: 268 KTGDISKPMSEVAYQLLSNACRIDDSPYVCPAIFDSSIPLPESTYYNGWKRILKRANVVH 327

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR-IRLGIKNSRRISS- 341
              HG+R  +AT  A++G      MA    KTV     Y    D  IR   +    +   
Sbjct: 328 VGTHGIRHRAATDIANSGIPVKVGMALTAHKTVSMFMRYVHAEDDPIRAAAEKVANLRRD 387

Query: 342 VVDSDDP 348
            +D+  P
Sbjct: 388 TIDNRAP 394


>gi|296446473|ref|ZP_06888416.1| integrase family protein [Methylosinus trichosporium OB3b]
 gi|296255969|gb|EFH03053.1| integrase family protein [Methylosinus trichosporium OB3b]
          Length = 446

 Score = 99.7 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 50/302 (16%), Positives = 94/302 (31%), Gaps = 41/302 (13%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRI---------SFESYFDQIIRKSGDFDYRKITTKHIR 120
           T+  L   Y   A  G +    R                  I    G      +    I 
Sbjct: 107 TVAELCDWYLADAETGRILGRRRRPIKASTLAMDRSRIDSHIKPLLGRRQVGALKLGDIE 166

Query: 121 SGVESRKHTPSS-----------------AIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163
           +         ++                 A + L+++  +F+ AVR   +  NP   V R
Sbjct: 167 AAQADIAAGKTAKARKGSRGGATTGGEGVAARTLSTLHAIFEHAVRVGKIPSNPAKGVRR 226

Query: 164 PKRKTEGIRPWTKEDMQQF----KSFWSEGSQP--RLAFEFLLYSGLRCSDSCRA--GVQ 215
                   R  ++ ++++     ++   +G  P    A  FLL +G R  +      G  
Sbjct: 227 LASAPRERR-LSRAEIERLGKTLRAAAEDGEHPTALAAIRFLLMTGFRRMEGLGVERGWL 285

Query: 216 HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINND---KQKMNATQFSIW 272
             +         K+G    V +    + LL   P  K  FF   D      +   +    
Sbjct: 286 DEEEGAIRFPDTKSGAQTRV-IGQAAIDLLLARPEAKSPFFFPADWGEGHFIGVVRVLDR 344

Query: 273 FKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
              +A  A +  + H +R   A+++ D G +   + A  G  +    + Y    + +R+ 
Sbjct: 345 ICERARLADI--TPHTLRHTFASLAGDLGFSELTIAALLGHASRGVTQRYIHIDEALRMA 402

Query: 333 IK 334
             
Sbjct: 403 AD 404


>gi|258616485|ref|ZP_05714255.1| phage integrase family site specific recombinase [Enterococcus
           faecium DO]
          Length = 225

 Score = 99.7 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 34/209 (16%), Positives = 71/209 (33%), Gaps = 23/209 (11%)

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQP 192
           + S+R  +++ +++E +  NP   V   K+     R + + +MQ              + 
Sbjct: 2   IASLRSFYQYLLKEEVIKENPFSYVHLKKKNLRLPRFFYENEMQALFDSVAGDSPLDLRN 61

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVEL------------PD 239
           R   E L  SG+R S+     V  +  ++   +   K        L             +
Sbjct: 62  RALLEVLYGSGIRLSECSSLSVSDIDFDSEVMLIHGKGNKERYAPLGSFAQDALQEYFRE 121

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQ----FSIWFKAKATKAGVNKSAHGVRKFSAT 295
           G   L+       +  F+N+  + +  T      +   K  +  + ++   H +R   AT
Sbjct: 122 GRQVLMTKYHEEHDIVFVNHHGKPITPTGIEYVLNQMIKKSSLDSDIH--PHMLRHTFAT 179

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTK 324
              + GA    +    G   +   + Y  
Sbjct: 180 HLLNNGADLRTVQELLGHANLSTTQIYAH 208


>gi|320450285|ref|YP_004202381.1| integrase/recombinase [Thermus scotoductus SA-01]
 gi|320150454|gb|ADW21832.1| integrase/recombinase [Thermus scotoductus SA-01]
          Length = 304

 Score = 99.7 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 44/239 (18%), Positives = 89/239 (37%), Gaps = 18/239 (7%)

Query: 116 TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPW 174
            + +R+ +   +  P     FL ++R  +++  + +     +P   + RPK         
Sbjct: 63  PEAVRALLLKERWAPRRVQGFLAALRSYYRYLSQVKGEAVSDPTEGIGRPKAGRRLPLHP 122

Query: 175 TKEDMQQFKSFWSEGSQPRLAFEF---LLYSGLRCSDSCRAGVQHLQNNI---FSIKTQK 228
             E++++F        + RL       L  +GLR S++     +++        +I+   
Sbjct: 123 APEELRRFLEALEAEKEARLLSRLARFLYGTGLRISEALSLKGRNVILEGSVPVAIRVVG 182

Query: 229 TG-TIITVELPDGFMKLLAMT--PIGKETFFINNDKQKM----NATQFSIWFKAKATKAG 281
            G     V L     ++L     P G  + F     +      +A      F+  A +AG
Sbjct: 183 KGNKERLVPLSRTAREVLLELGPPQGNVSIFTFTHGRHRGSVPSARYVEARFREAALRAG 242

Query: 282 VN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
           ++    + H +R   AT+  + G     +    G +++   + Y   A R RL    SR
Sbjct: 243 LDPRRFTPHKLRHAYATLLVENGVELDAVKDLLGHESIATTQIYLH-ASRERLREAASR 300


>gi|225023696|ref|ZP_03712888.1| hypothetical protein EIKCOROL_00560 [Eikenella corrodens ATCC
           23834]
 gi|224943578|gb|EEG24787.1| hypothetical protein EIKCOROL_00560 [Eikenella corrodens ATCC
           23834]
          Length = 285

 Score = 99.7 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 42/241 (17%), Positives = 89/241 (36%), Gaps = 15/241 (6%)

Query: 111 YRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAV-RQEYVAINPCLSVERPKRKTE 169
              +T   I   V  +  + S+  ++   +R +    V   +++   P   ++  K   +
Sbjct: 28  LSDLTRDFIHQVVNQKNCSSSTKNRYFALIRAILNKCVNEWDWLDKAP--KLKLHKEPKK 85

Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIK 225
            IR    E+ Q+  +        +    F L +GLR ++      + +            
Sbjct: 86  RIRWLYPEEAQRLVNALDSLPYMQHLVIFSLATGLRQANVLNLKWEQIDLRRQVAWIYPD 145

Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NK 284
             K G  I V L    M++L   P   +  F ++   ++ +    +W +    KAG+ + 
Sbjct: 146 QAKAGKAIGVPLNHTAMQVLMDRPRVSDYVFTHSKGARVKSISSRVW-REALEKAGITDF 204

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
             H +R   A+     G     L    GW++V+  + Y        L  ++  + + ++D
Sbjct: 205 RWHDLRHTWASWLVQQGTPLAALKEMGGWESVEMVQRYAH------LAPEHLSQHARLID 258

Query: 345 S 345
           S
Sbjct: 259 S 259


>gi|222149986|ref|YP_002550943.1| site-specific tyrosine recombinase XerD [Agrobacterium vitis S4]
 gi|221736968|gb|ACM37931.1| tyrosine recombinase XerD [Agrobacterium vitis S4]
          Length = 332

 Score = 99.7 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 50/324 (15%), Positives = 104/324 (32%), Gaps = 51/324 (15%)

Query: 75  ISEYRKS-AHWGSLAVNSRISFESYFDQII-----RKSGDFDYRKITTKHIRSGVESRKH 128
           I  + +  +     A N+  S+E   + +      RK               + +  R  
Sbjct: 9   IEAFLEMMSAERGAAGNTLSSYERDLEDLHGFLATRKVSVMAATSDDLSAYLADLGHRGF 68

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
             SS  + L+++R  +K+   +     +P   ++ PK+     +  +  D+ +  S    
Sbjct: 69  EASSQARRLSALRQFYKFLYAEGLRGDDPTSILDTPKKGRPLPKTLSIADVDKLLSLAQA 128

Query: 189 GS-----------QPRLAFEFLLYSGLRCSDSCRAGVQHL-QNNIFSIKTQKTGTIITVE 236
            +           +     E L  +G+R S+        L Q   F +   K      V 
Sbjct: 129 EAALDGPDRLQRLRRLALLELLYATGMRVSELVSLPANVLAQEGRFLVIRGKGNKERLVP 188

Query: 237 LPDGFMKLL-----------AMTPIGKET-----------------FFINNDKQKM-NAT 267
           L    +  +           A  P  K+T                  F    ++      
Sbjct: 189 LSRSAIAAMQVYAQAKEIEQAEKPPSKKTASKQTESKLGKSSGIGFLFPAASREGYLPRQ 248

Query: 268 QFSIWFKAKATKAGVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            F+   K  A +AG++    S H +R   A+   + GA    +    G   +   + YT 
Sbjct: 249 VFARELKDLAIRAGLSGDAVSPHVLRHAFASHLLENGADLRVVQELLGHSDISTTQIYTH 308

Query: 325 G-ADRIRLGIKNSRRISSVVDSDD 347
              +R+++ ++    ++    + D
Sbjct: 309 VLEERLQILVETHHPLAKHRKNHD 332


>gi|119384024|ref|YP_915080.1| phage integrase family protein [Paracoccus denitrificans PD1222]
 gi|119373791|gb|ABL69384.1| phage integrase family protein [Paracoccus denitrificans PD1222]
          Length = 323

 Score = 99.7 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 41/273 (15%), Positives = 93/273 (34%), Gaps = 35/273 (12%)

Query: 90  NSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGV---ESRKHTPSSAIQFLTSMRVLF 144
           N+ +++       +      D     +  + +   +   +++  + ++  + L+++R L 
Sbjct: 28  NTLLAYGRDLRDFVDWLAARDETLLTVPREGVEDYLSHCDAQGLSRATRARRLSAIRQLT 87

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-------EGSQPRLAFE 197
           ++A+ + +   +P   +  P R     +   + ++Q              E ++  +  E
Sbjct: 88  RFALDEGWREDDPAGRISGPGRAQRLPKVLDRAEVQAMLDALPRIGRNETERARNLVLVE 147

Query: 198 FLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKLLAM--------- 247
            +  +G+R S+     V   + +    +   K G    V L D   + LA          
Sbjct: 148 LVYATGMRVSELVSLPVGACRGDPALLLIRGKGGKERMVPLSDPARRALAAWLKRRDDAP 207

Query: 248 -------TPIGKETFFIN---NDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSA 294
                     GK   ++    + +  M     +      A  AG++    S H +R   A
Sbjct: 208 AESPLGRLVAGKGARWLFPAPSREGHMTRQAMNALLGQLALAAGIDPARVSPHVIRHAFA 267

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           T   + GA    +    G   +   E YT   D
Sbjct: 268 THLLEGGADLRAIQTLLGHADLGTTEIYTHVMD 300


>gi|313677913|gb|ADR74174.1| putative integrase [uncultured bacterium 52B7]
          Length = 404

 Score = 99.7 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 50/293 (17%), Positives = 103/293 (35%), Gaps = 20/293 (6%)

Query: 47  YMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRK 105
           Y     G       +    KK +T+      + KSA        +++ +  S    +   
Sbjct: 82  YWK--RGIPATLSLLKDAVKKKSTVNVSFFTFAKSAIDNSDKKQSTKDNLHSTLAVLNDF 139

Query: 106 SGDFDYRKIT---TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAIN--PCLS 160
               D++ +T    +     +  + +  ++  + +  +R L   A+ Q Y+  +  P   
Sbjct: 140 RSGLDFKDLTYTSLRDFEQYLREKGNAVNTIAKHMRQLRTLVNEAINQGYMHADAYPFRK 199

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR---LAFEFLLYSGLRCSDSCRAGVQHL 217
            +  K++       T +++++ ++   E    R    AF F  Y+GLR SD C+   ++ 
Sbjct: 200 YK-IKQEKGRHEFLTPDELKKLETVEVEEESMRHVLDAFLFCCYTGLRYSDFCQLTPENF 258

Query: 218 QN----NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF 273
                      K+ KTG  I + L    +       I      I +       ++ +   
Sbjct: 259 IRVNGKRWLYFKSVKTGVEIRLPLH--LLFESRALGILDRYPDIGSFAALPCNSEVNKQL 316

Query: 274 KAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +  A   G+ K    H  R   AT+    G     +    G  +V   + Y++
Sbjct: 317 RKLAGLCGIKKRITYHVSRHTCATLLVHQGVAITTVQKLLGHTSVKTTQIYSE 369


>gi|167756396|ref|ZP_02428523.1| hypothetical protein CLORAM_01929 [Clostridium ramosum DSM 1402]
 gi|167703804|gb|EDS18383.1| hypothetical protein CLORAM_01929 [Clostridium ramosum DSM 1402]
          Length = 286

 Score = 99.7 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 38/268 (14%), Positives = 90/268 (33%), Gaps = 23/268 (8%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           LI  Y+        ++ +   +    ++  + +   +  K   K  +  +    + P+S 
Sbjct: 10  LIVNYKNHLIDEEKSLATITKYIRDIEKFYQYADKKEVTKELVKLYKEELMK-SYKPTSI 68

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI----RPWTKEDMQQFKSFWSEG 189
              L ++   F++     ++       ++  K +        +  +K++ ++  +   + 
Sbjct: 69  NSMLAALNQFFEY---NGWLE----CKIKELKIQKRVFLEESKELSKDEYKRLVNAARKQ 121

Query: 190 SQPRLAFEF--LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL-- 245
              RL      +  +G+R S+     VQ L++    I     G +  +   D   ++L  
Sbjct: 122 KNERLYVLLQAICSTGIRVSEHRYITVQALKDGYAQI--YNKGKVREIFFSDDLKRILLK 179

Query: 246 --AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADA 300
                 I     F+    + ++ +      K     A V +S    H +R   A    + 
Sbjct: 180 YCHKNKIENGAIFVTRSGRPLDRSNIWKAMKDLCDDAKVERSKVYPHNLRHLFAVTYYNL 239

Query: 301 GATAHELMATYGWKTVDQAETYTKGADR 328
                 L    G  ++D    YT  + R
Sbjct: 240 KKDIARLADLLGHSSMDTTRIYTMSSGR 267


>gi|161617508|ref|YP_001591473.1| hypothetical protein SPAB_05367 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|161366872|gb|ABX70640.1| hypothetical protein SPAB_05367 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 360

 Score = 99.7 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 36/240 (15%), Positives = 81/240 (33%), Gaps = 17/240 (7%)

Query: 95  FESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWA-VRQE 151
             +   + + +    D  +   + +        R ++P+S    L  +  L+  A +   
Sbjct: 29  RSALARRYMHEITSVDIAEYRDQRLSEVSGKTGRTNSPASVRLELALLSALYNLARIEWG 88

Query: 152 YVAINPCLSVERPKRKTEGIRPWTKEDMQQF-KSFWSEGSQPRLAFEFLLYSGLRCSDSC 210
               NP   V +P       R  T ++ ++  ++      +    F   L + +R  +  
Sbjct: 89  TCTHNPVEHVRKPPASKGRTRRLTSQEERKIGRALAKRNIELAAIFHLALETAMRQGEIL 148

Query: 211 RAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLA--MTPIGKETFFINNDKQKMNA 266
               +++     I  +   K G++  V L     K+L     P+    F          +
Sbjct: 149 SLRWENIDLHIGIAHLPLTKNGSVRDVPLSFKARKVLREYSGPLSGPVF-------SYTS 201

Query: 267 TQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTK 324
             F   ++      G+ +   H +R  + +   + G     E+ A  G K++   + YT 
Sbjct: 202 NGFKSAWREVIQALGIVDLHFHDLRHEAISRLFELGTLNVMEIAAISGHKSLTMLKRYTH 261


>gi|77163532|ref|YP_342058.1| Phage integrase [Nitrosococcus oceani ATCC 19707]
 gi|254436437|ref|ZP_05049942.1| site-specific recombinase, phage integrase family protein
           [Nitrosococcus oceani AFC27]
 gi|76881846|gb|ABA56528.1| Phage integrase [Nitrosococcus oceani ATCC 19707]
 gi|207087971|gb|EDZ65245.1| site-specific recombinase, phage integrase family protein
           [Nitrosococcus oceani AFC27]
          Length = 310

 Score = 99.7 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 45/247 (18%), Positives = 85/247 (34%), Gaps = 30/247 (12%)

Query: 115 TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
           T K +   +  R        +  + +   +KWA++   V  +P    ++PKR        
Sbjct: 59  TEKFVAWQMRERGAKAHIVARRSSCLGSFYKWAMKNALVESDPIYLADKPKRPYRIPVWL 118

Query: 175 TKEDMQQFKSF-----------------WSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQ 215
            KE+ Q  +                     +  + R  + F  +L SGLR S++    V+
Sbjct: 119 EKEEQQALQEATQRIDNLPENIFGRTQEHIKAVRRRYDVLFGLILNSGLRISEALAVKVR 178

Query: 216 HLQ-NNIFSIKTQ---KTGTIITVELPDGFM----KLLAMTPIGKETFFINNDKQKMNAT 267
            ++  N  +   +   K      V LP+ F       L         F      +     
Sbjct: 179 DVRVMNGIAKSVRIIGKGNRERLVPLPEAFGQVFGAWLQGREGDDFVFAKAPGGKPPGPH 238

Query: 268 QFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
               + +    +AG++K  + H +R   AT   ++GA   ++ A  G   +   + YT  
Sbjct: 239 AARAYLRRLIERAGIDKPVTPHKLRHTYATRLLESGAELVDIQALLGHVDLSTTQIYTH- 297

Query: 326 ADRIRLG 332
               R+ 
Sbjct: 298 VSEERMA 304


>gi|270285043|ref|ZP_06194437.1| site-specific tyrosine recombinase XerD [Chlamydia muridarum Nigg]
 gi|270289068|ref|ZP_06195370.1| site-specific tyrosine recombinase XerD [Chlamydia muridarum Weiss]
 gi|301336439|ref|ZP_07224641.1| site-specific tyrosine recombinase XerD [Chlamydia muridarum
           MopnTet14]
          Length = 299

 Score = 99.3 bits (246), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 70/224 (31%), Gaps = 23/224 (10%)

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
              K + ++  + L +++V F +    + +   P   +E PK         + E++    
Sbjct: 63  HQAKESETTLARRLIALKVFFHFLKDAKLIHQQPF--IEHPKVWKRLPSILSTEEVNSLL 120

Query: 184 SF--------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
           +             ++          +G+R S+ C   +  + ++   +  +   T + V
Sbjct: 121 NQPLNTLNLDAYIANRDTAILYTFYATGIRVSELCDLCIGDISDDFIRVTGKGRKTRL-V 179

Query: 236 ELPDGFMKLLAMTPI-----------GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284
            +     + +                 +E  F++   +K+  +         A       
Sbjct: 180 PISIKARQTIDSYLTMFRERFQKKNPSEEHVFLSIRGKKLERSCVWKRITFYAKLVTTKH 239

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
            S H +R   AT   +  A    +    G   +   E YT  A 
Sbjct: 240 ISPHSLRHAFATHLLNNQADLRIIQEMLGHARISSTEIYTHVAS 283


>gi|300115640|ref|YP_003762214.1| integrase family protein [Nitrosococcus watsoni C-113]
 gi|299541582|gb|ADJ29893.1| integrase family protein [Nitrosococcus watsonii C-113]
          Length = 310

 Score = 99.3 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 48/293 (16%), Positives = 99/293 (33%), Gaps = 37/293 (12%)

Query: 76  SEYRKSAHW-GSLAVNSRISFESYFD---QIIRKSGD---FDYRKITTKHIRSGVESRKH 128
            ++    H+    +  +  ++ S      + + ++G          T K +   +  R  
Sbjct: 13  KDFLAHLHYAKGYSQGTCYAYNSDLGIWGRWLEEAGKDWCQATHADTEKFVAWQMRERGA 72

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF--- 185
                 +  + +   +KWA++   V  +P    ++PKR         KE+ Q  +     
Sbjct: 73  KAHIVARRSSCLGSFYKWAMKNALVESDPIYLADKPKRPYRIPVWLEKEEQQALQEATQR 132

Query: 186 --------------WSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQ- 227
                           +  + R  + F  +L SGLR S++    V+ ++  N  +   + 
Sbjct: 133 IDNLPENIFGRTQEHIKAVRRRYDVLFGLILNSGLRISEALAVKVRDVRVMNGIAKSVRI 192

Query: 228 --KTGTIITVELPDGFM----KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281
             K      V LP+ F       L         F      +         + +    +AG
Sbjct: 193 IGKGNRERLVPLPEAFGQVFGAWLQGREGDDFVFAKAPGGKPPGPHAARAYLRRLIERAG 252

Query: 282 VNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           ++K  + H +R   AT   ++GA   ++ A  G   +   + YT      R+ 
Sbjct: 253 IDKPVTPHKLRHTYATRLLESGAELVDIQALLGHVDLSTTQIYTH-VSEERMA 304


>gi|229820647|ref|YP_002882173.1| tyrosine recombinase XerD [Beutenbergia cavernae DSM 12333]
 gi|229566560|gb|ACQ80411.1| tyrosine recombinase XerD [Beutenbergia cavernae DSM 12333]
          Length = 311

 Score = 99.3 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 43/271 (15%), Positives = 91/271 (33%), Gaps = 32/271 (11%)

Query: 85  GSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSGVESRK--------HTPSSA 133
             L+ ++  ++     +        G      +    + + VE+ +         + SSA
Sbjct: 21  RGLSPHTLAAYRRDLSRYAAYLGALGRARLSDVRPADVDAYVEALRTGSDGGSALSASSA 80

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS--- 190
            + + ++R   ++A+ +     +P + V  P       +    ED+++     S G    
Sbjct: 81  SRAVVAVRGWHRFAMLEGIAPSDPAVDVRPPSTTKRLPKAIAVEDVERLLVAASAGDGPG 140

Query: 191 --QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTI-ITVELPDGFMKL- 244
             + R   E L  +G R +++    V  +  +    S++    G     V L        
Sbjct: 141 PLRDRALLELLYGTGARITEATSLAVDDIDLDDDAGSVRLFGKGRRERVVPLGRFARDAV 200

Query: 245 ----------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKF 292
                     LA    G    F+    + ++        ++ A +A +  + S H +R  
Sbjct: 201 DAYLVRARPVLAQAGTGTPALFLGMRGRPLSRQSAWAILQSAARRADLEEHVSPHTLRHS 260

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYT 323
            AT     GA    +    G  +V   + YT
Sbjct: 261 YATHLLAGGADVRVVQELLGHASVTTTQLYT 291


>gi|218263977|ref|ZP_03477908.1| hypothetical protein PRABACTJOHN_03598 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222388|gb|EEC95038.1| hypothetical protein PRABACTJOHN_03598 [Parabacteroides johnsonii
           DSM 18315]
          Length = 389

 Score = 99.3 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 48/293 (16%), Positives = 93/293 (31%), Gaps = 30/293 (10%)

Query: 65  RKKPTTLKWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRS 121
           ++   TL   + EY +    + +  +  R       +  + ++   D     +     R 
Sbjct: 89  KRSCITLIDFLKEYEQEKFGFSASTLKGRRDLRLKVETYLNETCQPDIVLANVDADFCRG 148

Query: 122 GVESRKHTPS------------SAIQFLTSMRVLFKWAVRQEYVAINPCLSV---ERPKR 166
            +   ++  +            +A      +      AVR+  +  NP  S+   E+ + 
Sbjct: 149 FIAFLRYAKNSVRKDGSTISNGAAHHHQAVLNGALNKAVREGILTSNPLKSLASKEKYQP 208

Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIF 222
                   T E+++   +        + AF F  ++GLR SD        +      +  
Sbjct: 209 SESIREYLTLEELKAAMAAPCPRDDVKRAFLFSCFTGLRLSDVRSLTWGKIIKAPDGHTL 268

Query: 223 SIKT--QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280
            I+   QKT  ++ V L    +  L       E  F             + W       A
Sbjct: 269 YIRVRMQKTQKLLNVPLSKEALDCLYPKDDADEPIFTLPAGASNIERNLTKWM----QNA 324

Query: 281 GVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            + K  + H  R   AT+    GA  +      G   V+    Y K  D+ ++
Sbjct: 325 KITKHITYHCSRHSFATMMLTLGADIYTTSKLLGHANVNTTSIYAKIVDQKKI 377


>gi|76789612|ref|YP_328698.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis
           A/HAR-13]
 gi|237803298|ref|YP_002888492.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis
           B/Jali20/OT]
 gi|237805218|ref|YP_002889372.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis
           B/TZ1A828/OT]
 gi|76168142|gb|AAX51150.1| integrase/recombinase [Chlamydia trachomatis A/HAR-13]
 gi|231273518|emb|CAX10435.1| integrase/recombinase [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231274532|emb|CAX11328.1| integrase/recombinase [Chlamydia trachomatis B/Jali20/OT]
          Length = 300

 Score = 99.3 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 31/224 (13%), Positives = 71/224 (31%), Gaps = 23/224 (10%)

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
              K + ++  + L +++V F +    + +   P   +E PK         + E++    
Sbjct: 65  HKAKESETTLARRLIALKVFFHFLKDAKMLDQQPF--IEHPKIWKRLPSILSTEEVNSLL 122

Query: 184 SFWS--------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
                         S+          +G+R S+ C   +  + ++   +  +   T + V
Sbjct: 123 DQPLNIPNLDTHIASRDAAILYTFYATGIRVSELCDLCIGDISDDFIRVTGKGRKTRL-V 181

Query: 236 ELPDGFMKLLAM-----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284
            +     + +                 +E  F++   +K++ +         A      +
Sbjct: 182 PISIKAKQAIDAYLSSFRDELQKKNPSEEHVFLSIRGKKLDRSCVWKRITFYAKLVTTKR 241

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
            S H +R   AT   +  A    +    G   +   E YT  A 
Sbjct: 242 ISPHSLRHAFATHLLNNHADLRIIQEMLGHSRISSTEIYTHVAS 285


>gi|70726004|ref|YP_252918.1| hypothetical protein SH1003 [Staphylococcus haemolyticus JCSC1435]
 gi|68446728|dbj|BAE04312.1| int [Staphylococcus haemolyticus JCSC1435]
          Length = 391

 Score = 99.3 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 57/347 (16%), Positives = 114/347 (32%), Gaps = 54/347 (15%)

Query: 48  MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG 107
            + + G   +     +P     T K +  ++ K      + V+S  + E      I +  
Sbjct: 44  QAEMIGRQLRNGDYIAPSSS--TFKQVADDWLKQYA-NDVKVSSVRAREKAIQHAIERFN 100

Query: 108 DFDYRKITTKHIRSGVESRKHTPSSA--IQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165
               + I     +  V+      S       + S  ++FK+A     +   P   ++RPK
Sbjct: 101 TKPIQTIKKHDYQRFVDDISAQYSKNYVDSIVASTNMIFKYAYDTRLIKAMPSEGIKRPK 160

Query: 166 RKTEGIR---------PWTKEDMQQFKSFWSEGSQPRLAFEF---LLYSGLRCSDSCRAG 213
           +K                 K+++ QF         P+ +FE    L Y+G+R  +     
Sbjct: 161 KKVSVEELEDIEIHKKFLEKDELFQFLKVAKYHHSPQNSFEVFTTLAYTGMRAGELLALK 220

Query: 214 VQHLQ--NNIFSIK----------------TQKTGTII-TVELPDGFMKLLAMTPI---- 250
              +   NN  SI                 T+KT + I  + +    ++LL    +    
Sbjct: 221 WSDIDFENNTISITKTYYNPNNNKKHYQILTRKTESSIGKITVDPHVIQLLKDYKVNVQD 280

Query: 251 --------GKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISAD 299
                        F + +   +   +  +W KA   K  +     S H  R     +  +
Sbjct: 281 TWKNELYVDNNFVFTDVNGYPLVIKKLQLWIKAILKKTDITNKQISTHSFRYTHYALLIE 340

Query: 300 AGATAHELMATYGWKTVDQAE-TYTKGADRIRLGIKNSRRISSVVDS 345
           AG    E+      K ++     Y K  +  +     S++ S ++++
Sbjct: 341 AGVHIKEIQERLRHKDINTTMNIYAKITNSYKK--DASQKFSKLMEN 385


>gi|257894525|ref|ZP_05674178.1| site-specific recombinase [Enterococcus faecium 1,231,408]
 gi|314949949|ref|ZP_07853247.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0082]
 gi|257830904|gb|EEV57511.1| site-specific recombinase [Enterococcus faecium 1,231,408]
 gi|313643717|gb|EFS08297.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0082]
          Length = 392

 Score = 99.3 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 60/390 (15%), Positives = 122/390 (31%), Gaps = 70/390 (17%)

Query: 1   MTPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60
           M    R    ++      GKI +YF+     R R         +            K+  
Sbjct: 1   MENMSRFKKHISAT----GKITWYFQAFRTTR-RGFNSKREAQLAYLEMERQHRNQKKRI 55

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
            ++ +    + KW   EY +S +     + +    E   + + R  GD     ++++ ++
Sbjct: 56  ASNDKFSVVSQKWF--EYYRSLN--EQKIATYDKREEQVEILNRWIGDEKLSSLSSEELQ 111

Query: 121 SGVESRKHT----------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK--- 167
             +   K             +S    +  + ++FK+ +++     NP   V+ PK +   
Sbjct: 112 KFLFILKEKGINGVDVGYAKNSLQSLVQVLNMIFKYCMKKNLTNENPMKFVKMPKYQLTV 171

Query: 168 --------TEGIRPWTKEDMQQFKSF--WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217
                   +   +  T ++++ F ++    E     + F  L Y+G R S++     Q +
Sbjct: 172 KDLKESVNSLEDKFLTVDELRTFLNYGIIYEELPMSVLFHVLFYTGCRVSEALALQPQDI 231

Query: 218 QNNI-----------------FSIKTQKT-GTIITVELPD-------GFMKLLAMTPIG- 251
                                F I+T KT  +   V +           + +L  T    
Sbjct: 232 DFERNEILFYKQTAVKGKSKDFRIETTKTVSSARRVPVTPLVMEKLQELIDVLNKTKRNS 291

Query: 252 ----KETFFI-----NNDKQKMNATQFSIWFKAKATKAGVNKSAHG--VRKFSATISADA 300
                ET+                   +   K    + G+NK  H    R   A++ A+ 
Sbjct: 292 NFVVDETYLFVYLDPGKRGVPYRREYVNDHVKRCVERCGINKDFHTHLARHTMASLVAEY 351

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIR 330
             +   L    G      ++ Y       R
Sbjct: 352 -CSWDVLKDRLGHTDSTTSKIYRHLTSNER 380


>gi|302668703|ref|YP_003832528.1| tyrosine recombinase XerC2 [Butyrivibrio proteoclasticus B316]
 gi|302397043|gb|ADL35946.1| tyrosine recombinase XerC2 [Butyrivibrio proteoclasticus B316]
          Length = 352

 Score = 99.3 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 59/308 (19%), Positives = 109/308 (35%), Gaps = 54/308 (17%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQI-------IRKSGDFDYRKITTKHI-----RSG 122
           + +Y +S+    L+V++ + +   F          I K  D    + T   +        
Sbjct: 29  VQDYIESSR-DYLSVSTLLQYTYDFVDFFTFLSSRIEKYKDKPIPEYTLVDMMQLSCEDM 87

Query: 123 VESRK----------HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
            E  K            P +  +FL+++  LF + V++  +A NP  +V RP  K + + 
Sbjct: 88  DECMKWYKHPDKDVFRKPRTINRFLSTLSSLFTFYVKRRKLADNPVSAVRRPAVKRKEVN 147

Query: 173 PWTKEDMQQFKSFWSEGS---------QPRLAF------EFLLYSGLRCSDSCRAGVQHL 217
              + +  QF S    G+           R            L++G+R S+     +  +
Sbjct: 148 RLYEGEKSQFLSAVMNGTGLTKRQLPYHERQWLRDYTIARVFLFTGIRVSELVGLDISDV 207

Query: 218 QNNIFSIK-TQKTGTIITVELPDG--------FMKLLAMTPIGKET-FFINNDKQKMNAT 267
                S++  +K G I  V L D           +   M     ET  FI+  KQ++   
Sbjct: 208 NLREHSLRVVRKGGNIERVYLDDETDLILREYLAEREEMELTDDETALFISRKKQRIGVR 267

Query: 268 QFSIWFKAKATKAGVN-----KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
                 K    +AG+       + H +R   AT    A    +      G K++     Y
Sbjct: 268 AVEKLIKKY-QQAGLPSHPNGLTPHRLRATFATDLYSATGDIYRTSKAMGHKSIATTTIY 326

Query: 323 TKGADRIR 330
            + +D+ +
Sbjct: 327 AEVSDKQK 334


>gi|254819058|ref|ZP_05224059.1| site-specific tyrosine recombinase XerC [Mycobacterium
           intracellulare ATCC 13950]
          Length = 232

 Score = 99.3 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 69/213 (32%), Gaps = 21/213 (9%)

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS---- 190
           +  ++++    WAVR+  +  +P   ++ PK          ++      +    G+    
Sbjct: 5   RRTSAVKAFTAWAVRRGLLDTDPAARLQVPKAHRTLPAVLRQDQALDALAAAKSGAQQGE 64

Query: 191 ----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLL 245
               + RL  E L  +G+R S+ C   +  +   +       K     +V       + L
Sbjct: 65  PMALRDRLIVEMLYATGIRVSELCGLDIDDVDTRHRLVRVLGKGNKQRSVPFGAPAAEAL 124

Query: 246 AMTPIGKETFFINNDKQK---MNATQFSIWFKAK---------ATKAGVNKSAHGVRKFS 293
                      +N D      + A    I  +           A     +   HG+R  +
Sbjct: 125 DAWLADGRPALVNADSGPALLLGARGRRIDVRQARTVVHQTVAAVDGAPDMGPHGLRHSA 184

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           AT   + GA    +    G  ++   + YT  A
Sbjct: 185 ATHLLEGGADLRVVQELLGHSSLATTQLYTHVA 217


>gi|323489572|ref|ZP_08094799.1| tyrosine recombinase xerC [Planococcus donghaensis MPA1U2]
 gi|323396703|gb|EGA89522.1| tyrosine recombinase xerC [Planococcus donghaensis MPA1U2]
          Length = 297

 Score = 99.3 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 45/265 (16%), Positives = 93/265 (35%), Gaps = 27/265 (10%)

Query: 85  GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLT 138
            + + ++   +E         +   G  D R++   H R+ V      K + ++  + ++
Sbjct: 18  KNYSEHTVHHYEHDLADFFLFLNAEGVPDIREVEYIHARNYVTKLYDAKLSRTTVSRKIS 77

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194
           ++R  F++A R+  +      S+  PK++    + + +E++ Q             +   
Sbjct: 78  AIRSFFRYANREYGLDEAAFRSLYHPKKEERLPQFFYEEELAQLFKSVLGDDKLSIRNTA 137

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVE------------LPDGF 241
             E L  +G+R S+     +  L   +  +K    G     +             L D  
Sbjct: 138 LLELLYATGMRVSECVSIRLTDLDQTMQIVKVMGKGRKERYIPYGQFAQDALEHYLEDAR 197

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISAD 299
            KL+       +  F+N+  + +              KA VN S   H +R   AT   +
Sbjct: 198 PKLMKKQ--DHDYLFVNSRGEAVTDRGIRHILSECMKKASVNSSIYPHMIRHTFATHLIN 255

Query: 300 AGATAHELMATYGWKTVDQAETYTK 324
            GA    +    G   +   + YT 
Sbjct: 256 NGADIRTVQELLGHSHLSSTQVYTH 280


>gi|319646365|ref|ZP_08000595.1| hypothetical protein HMPREF1012_01631 [Bacillus sp. BT1B_CT2]
 gi|317392115|gb|EFV72912.1| hypothetical protein HMPREF1012_01631 [Bacillus sp. BT1B_CT2]
          Length = 379

 Score = 99.3 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 50/296 (16%), Positives = 100/296 (33%), Gaps = 42/296 (14%)

Query: 70  TLKWLISEYRK-SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128
           T + +  E+    +     +   R    ++   I+   G    + IT  + +  +     
Sbjct: 66  TFEDVFKEWWDVHSKTIKRSTRYRK-LSNFKKHILPHFGKLKIKDITRAYCQKVINLIAQ 124

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT-------EGIRPWTKEDMQQ 181
              S         ++FK+A+R EY+  NP   V  PK++        E    W K +++ 
Sbjct: 125 DIDSVQNVKIQANLVFKYALRMEYITKNPMEFVVIPKKEENFLSQEEEKRNFWEKAEIKT 184

Query: 182 F--KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----------------NNIFS 223
           F  K+      Q  + F  L+++G+R  +      + +                      
Sbjct: 185 FLEKAHSQLAPQDYVMFYVLIFTGMRKGELLALEWKDVDLKEKTINIKQTMFFENGEEVI 244

Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIG-------------KETFFINNDKQKMNATQFS 270
             T+K  +   + + D   ++L                    +   I  D + +     +
Sbjct: 245 QTTKKYHSKRIITIDDQTAQILKKWRTQQKEMLLSNGITSEAKYVLIRGDMRPLRLAYPN 304

Query: 271 IWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTK 324
                   K  +++ + HG R   A+I  +AGA+  E+ A  G K +      YT 
Sbjct: 305 DLLNRMIAKNKLHRITIHGFRHSHASILFEAGASIKEVQARLGHKEIQTTMNIYTH 360


>gi|304404723|ref|ZP_07386384.1| integrase family protein [Paenibacillus curdlanolyticus YK9]
 gi|304346530|gb|EFM12363.1| integrase family protein [Paenibacillus curdlanolyticus YK9]
          Length = 307

 Score = 99.3 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 37/276 (13%), Positives = 80/276 (28%), Gaps = 24/276 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLTSMR 141
              + +++  + +    + R         I    + S +     R     +  + L+++R
Sbjct: 20  RGYSKDTQQGYLNDIQLLCRSLRGKPLPSIRKIDVMSHLTDARERGAGDGARNRALSAIR 79

Query: 142 VLFKWAVRQEYVAINPCLSVERPKR-KTEGIRPWTKEDMQQFKSFWSEGSQPR--LAFEF 198
           + FK  +  E +  NP   V + K  K        +  +           + R       
Sbjct: 80  LFFKVMIEFERMEHNPAADVSKSKVEKNRLPLYLEESYLGDLLRSVEGNFRVRDIAMLAL 139

Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDG--------FMKLLAMTP 249
           + Y GLR S+  +  +Q        +    K      + L             + +    
Sbjct: 140 MSYCGLRVSEVSQLNLQDFDPEAGQLSILGKGRKWRYIPLQPSIITLLKQCLQERIPPKR 199

Query: 250 IGKETFFINNDKQKMNATQFSIWFKA--------KATKAGVNKSAHGVRKFSATISADAG 301
             +  FF++   ++++        +             A    SAH +R   AT      
Sbjct: 200 KNEHPFFVSRLGRRISRRTVQFIVERTFEQFKQQHEHMAERKFSAHKLRHSFATNLLSTD 259

Query: 302 A-TAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
                 L    G   +   + YT   D+ +     +
Sbjct: 260 KVDLRTLQELLGHADISTTQIYTHITDKKKKQAMAA 295


>gi|218886780|ref|YP_002436101.1| integrase family protein [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218757734|gb|ACL08633.1| integrase family protein [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 355

 Score = 99.3 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 52/323 (16%), Positives = 103/323 (31%), Gaps = 25/323 (7%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHESTFI-PAYMSALTGSTPKREYINSPRKKPTTLKW 73
           + RHGK + Y       R++LP           +  A+      +           +L  
Sbjct: 6   KDRHGKPVIY------GRVKLPSGKHREHRCTTWREAVAWEESVKVTQPDTVTGTVSLAA 59

Query: 74  LISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVE--SRKHTP 130
           L + Y        +A  +       F D +         +++T   I + ++  +R+ + 
Sbjct: 60  LFTAYLDHVQARGMADKTYGEKRQAFRDLLADVKPSLPVQRVTYALIEAHLDGIARRISG 119

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCL-SVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
           + A +   ++   + W VR   +   PC   VER +         T ED  +        
Sbjct: 120 AQANRRRKNILAAYSWGVRAFKLPE-PCPWRVERYREDKRPKYVPTPEDFWKVHDAAKSP 178

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----NNIFSIKTQKTG--TIITVELPDGFMK 243
              R      L++  R  +  R     L           + +K G      + +      
Sbjct: 179 D-ERAMLFTALHTAARKEELFRMQRSDLDFANRRLRLWTRKRKGGGLEEDWIPMTQALHD 237

Query: 244 LLAMTPIG---KETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISAD 299
            L    +    +E  F+++      +   +    +   KAGV +   H +R  SA++   
Sbjct: 238 CLLRHRLQMGFREHVFVSSRGTPWVSA--THLMYSLCDKAGVRRFGFHAIRHLSASMLDG 295

Query: 300 AGATAHELMATYGWKTVDQAETY 322
           AG     + A    ++      Y
Sbjct: 296 AGVPLSVIQAILRHRSALTTSRY 318


>gi|255349272|ref|ZP_05381279.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis 70]
 gi|255503808|ref|ZP_05382198.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis 70s]
          Length = 300

 Score = 99.3 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 31/224 (13%), Positives = 71/224 (31%), Gaps = 23/224 (10%)

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
              K + ++  + L +++V F +    + +   P   +E PK         + E++    
Sbjct: 65  HKAKESETTLARRLIALKVFFHFLKDAKMLDQQPF--IEHPKIWKRLPSILSTEEVNSLL 122

Query: 184 SFWS--------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
                         S+          +G+R S+ C   +  + ++   +  +   T + V
Sbjct: 123 DQPLNIPNLDTHIASRDAAILYTFYATGIRVSELCDLCIGDISDDFIRVTGKGRKTRL-V 181

Query: 236 ELPDGFMKLLAM-----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284
            +     + +                 +E  F++   +K++ +         A      +
Sbjct: 182 PISIKAKQAIDAYLSSFRDELQKKNPSEEHIFLSIRGKKLDRSCVWKRITFYAKLVTTKR 241

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
            S H +R   AT   +  A    +    G   +   E YT  A 
Sbjct: 242 ISPHSLRHAFATHLLNNHADLRIIQEMLGHSRISSTEIYTHVAS 285


>gi|188492334|ref|ZP_02999604.1| integrase for prophage CP-933T [Escherichia coli 53638]
 gi|188487533|gb|EDU62636.1| integrase for prophage CP-933T [Escherichia coli 53638]
          Length = 341

 Score = 99.3 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 40/270 (14%), Positives = 82/270 (30%), Gaps = 26/270 (9%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI--------TTKHIRSG 122
           L  L+  + +        + +    ++    +  + GD    +           + +   
Sbjct: 57  LSELVDIWYEM---HGKTLTTGEERQAKLKAVCERMGDPLVSEFDRNMFAVYRKRRLSGE 113

Query: 123 VESRKHTP---SSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKED 178
             + K  P   ++  +  + +  +F    R   +   NP   V   K     +    +++
Sbjct: 114 WSANKKKPTKEATVNREQSYLHAVFSELKRLGAWAGENPLEGVRHFKVSESELSFLYEDE 173

Query: 179 MQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
           +++  S   E     L       L +G R S++ +     +     +    K+    TV 
Sbjct: 174 IERLLSVCDESGNADLGSVVRVCLATGARWSEAEKLTQSQVLPGRITFTNTKSKKNRTVP 233

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATI 296
           + D   KLL   P  +   F N          F+   K    +    +  H +R   A+ 
Sbjct: 234 ISDNIQKLL---PKRRGRLFSN------CYEAFTWALKKAKIELPEGQRTHVLRHTFASH 284

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326
               G     L    G  T+     Y   A
Sbjct: 285 FMMNGGNILVLQQILGHSTILMTMRYAHFA 314


>gi|255507490|ref|ZP_05383129.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis
           D(s)2923]
 gi|296439216|gb|ADH21369.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis
           E/11023]
          Length = 300

 Score = 99.3 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 32/224 (14%), Positives = 71/224 (31%), Gaps = 23/224 (10%)

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
              K + ++  + L +++V F +    + +   P   +E PK         + E++    
Sbjct: 65  HKAKESETTLARRLIALKVFFHFLKDAKMLDQQPF--IEHPKIWKRLPSILSTEEVNSLL 122

Query: 184 SFWS--------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
                         S+          +G+R S+ C   +  + ++   +  +   T + V
Sbjct: 123 DQPLNIPNLDTHIASRDAAILYTFYATGIRVSELCDLCIGDISDDFIRVTGKGRKTRL-V 181

Query: 236 ELPDGFMKLLAM-----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284
            +     + +                 +E  F++   +K++ +         A      +
Sbjct: 182 PISIKAKQAIDAYLSSFRDELQKKNPSEEHVFLSIRGKKLDRSCVWKRITFYAKLVTTKR 241

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
            S H +R   AT   D  A    +    G   +   E YT  A 
Sbjct: 242 ISPHSLRHAFATHLLDNHADLRIIQEMLGHSRISSTEIYTHVAS 285


>gi|160932995|ref|ZP_02080384.1| hypothetical protein CLOLEP_01837 [Clostridium leptum DSM 753]
 gi|156868069|gb|EDO61441.1| hypothetical protein CLOLEP_01837 [Clostridium leptum DSM 753]
          Length = 393

 Score = 99.3 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 44/297 (14%), Positives = 89/297 (29%), Gaps = 44/297 (14%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           +      ++ KS     ++V+   S+++Y    +         +I    I+S +   K  
Sbjct: 63  SFGDWAEKFLKSKEADGVSVSQLNSYKNYCRNHLSPLYMKSLSEILPADIQSIINETKLA 122

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            ++      +   +F+ A+    +  NP   V  PK   E  R    +D Q++       
Sbjct: 123 KNTLKAIRNTASQIFRLAIENRAIDFNPADYVRIPKIAPEFHRDALTDDQQRWIRETPH- 181

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII---------------- 233
            + + A   +LYSGLR  ++       +  N  +I   K+  +I                
Sbjct: 182 -RAQRAAMLMLYSGLRRGEATALTWADVDLNTGTISVTKSAEMINGKPHIKTTKTETGIR 240

Query: 234 TVELPDGFMKLLAMTPIGK----ETFFINNDKQKMNATQFSIWFKAKATKAGVNK----- 284
            V +P   +  L      +         +   + M    +   + +      V       
Sbjct: 241 IVRIPQVLIDFLRNEKDSEFPLCMHVIHSARGKMMTNQAWRCMWDSYLLDLNVKYGYGGK 300

Query: 285 ----------------SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
                           + H +R   A++   AG          G   +      YT 
Sbjct: 301 INKFDPHGVVMRIPAFTPHWLRHTFASLLYRAGVDVLTARDQLGHSDIKTTLMIYTH 357


>gi|330988384|gb|EGH86487.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. lachrymans str. M301315]
          Length = 367

 Score = 99.3 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 55/351 (15%), Positives = 111/351 (31%), Gaps = 43/351 (12%)

Query: 7   LPPFVTKERT-RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
           LPP + ++   R+G   Y +R     R+      +         A   +   +  +    
Sbjct: 13  LPPNLYRKTDKRNGHTYYTYRDPVTGRVF-GLGKDKAAAIMEAVAANHADVLKPTLAQRI 71

Query: 66  KKP-----TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
            +P      T    + EY        L+  +  S +S    +    G+   R I T  I 
Sbjct: 72  AEPVAVDDRTFADWLGEYELIYTERGLSAQTTRSMKSRLKTVNSAFGEKFVRNIRTMDIA 131

Query: 121 SGVE--SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
           + +   S+      +  + + +R +F  A+   +  +NP  + +  + K +  R      
Sbjct: 132 TFLATFSKAGKAPMSKAYRSLLRDVFNEAIAAGWCDLNPVDATKPARSKVKRARL----S 187

Query: 179 MQQFKSFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
           ++ +K+  +   +P  + A E  L +G R  D      +   +    +   KTG  + + 
Sbjct: 188 LELWKAAHTATDRPWLKRAMELALLTGQRRDDIGSMLFKDEHDGFLHVIQSKTGARLRIS 247

Query: 237 LPDGFMK----------------LLAMTPIGKETFFINNDKQKMNATQFSIWFKAK---- 276
                                  L         T  +      +     ++ F       
Sbjct: 248 TSLRLEAIGLDLSSVIKSCRDRVLSKHLVHHTRTVAVAKAGNPIKLNTLTLAFAEARDKG 307

Query: 277 ATKAGVNK-----SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           A   G++      S H +R  +A + A  G    +L    G +     E Y
Sbjct: 308 AAALGIDLGANPPSFHEMRSLAARLHALEGRDPQKL---LGHRNAAMTEMY 355


>gi|319641682|ref|ZP_07996365.1| phage integrase family Site-specific recombinase [Bacteroides sp.
           3_1_40A]
 gi|317386656|gb|EFV67552.1| phage integrase family Site-specific recombinase [Bacteroides sp.
           3_1_40A]
          Length = 401

 Score = 99.3 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 38/230 (16%), Positives = 81/230 (35%), Gaps = 13/230 (5%)

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
             + ++  + ++A  +    + +   A R+  +  N    ++         +  + E+++
Sbjct: 152 KVMVNKPISRNTASAYWNIFKQVLTKAYRERRLVDNIASLLDNIPCTIPVKQSLSLEEVR 211

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-----QNNIFSIKTQKTGTIITV 235
           +  +        R A  F   SGLR SD      +++       +    K  KT     V
Sbjct: 212 KLYNSECSVPVVRKAAIFSCLSGLRISDILNLKWENIQTYADGGHYLDFKCVKTQRQTQV 271

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFS 293
            + D   +L+      K  +  +   + M       W K    + G+NK  + H  R   
Sbjct: 272 PIGDDAYELIQPQTTDK--YIFSGFNRTMTYRVMQDWIK----ECGINKHITFHCFRHTY 325

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343
           A++  + G   + +      K V   + Y   AD       +  R+++V 
Sbjct: 326 ASLQLELGTDIYTVQHLLNHKNVSTTQIYASHADPKTREAADRIRLTNVK 375


>gi|251780250|ref|ZP_04823170.1| phage integrase [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|243084565|gb|EES50455.1| phage integrase [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 391

 Score = 99.3 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 63/380 (16%), Positives = 131/380 (34%), Gaps = 70/380 (18%)

Query: 11  VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP-----R 65
           + K++ ++GK  Y+ R  H + +R P          Y   +     K + I        +
Sbjct: 5   IYKKKLKNGKEYYFHRLRH-KNLRKPKDI-------YAKTVKELEEKIKLITHDLDYNIQ 56

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGV 123
                 +   S++    H+  L  ++++ +E+ +   I+ S   D   ++IT+K I++  
Sbjct: 57  NNKDCFETFFSDWLFDVHFMGLKPSTQMRYETIYRNHIKNSELSDIKIKEITSKDIQTYY 116

Query: 124 ESRKHTPSSAIQFLTSMRVLF----KWAVRQEYVAINPCLSVERPK-------RKTEGIR 172
              K     ++  + S+  +     ++A    ++  N   ++  PK        K   + 
Sbjct: 117 N-NKIKRGCSVTLVKSIHKIITPCIRYAYNNNFIIKNFTSALILPKETEKDKLNKKSSVI 175

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-------------- 218
           P+T E+ ++F S    G++  + F   L SGLR  +      + +               
Sbjct: 176 PFTLEEQKKFISVI-RGNKFEMIFLTALNSGLREGELLALTWKDINFKDKYINVNKNLSV 234

Query: 219 -----------NNIFSIKTQKTGTIIT-VELPDGFMKLLAMTP--------------IGK 252
                       +   ++T KT   I  V +P      L                     
Sbjct: 235 VTEISKENGRGGSTLEVQTPKTKKGIRKVSIPSFLATALKQYKKQQIKNRLKMNQFYNDN 294

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATY 311
              F +     +N  +    FK       + +   H +R   AT   + G +A  + +  
Sbjct: 295 NLVFCDELGNYLNRDKIVYRFKKVLEDNKMKEIKFHDLRHTYATRLFELGESAKTVQSFL 354

Query: 312 GWKTVDQA-ETYTKGADRIR 330
           G   +    +TYT   D ++
Sbjct: 355 GHSDISVTLDTYTHVLDSMK 374


>gi|268315977|ref|YP_003289696.1| integrase family protein [Rhodothermus marinus DSM 4252]
 gi|262333511|gb|ACY47308.1| integrase family protein [Rhodothermus marinus DSM 4252]
          Length = 320

 Score = 99.3 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 44/284 (15%), Positives = 101/284 (35%), Gaps = 29/284 (10%)

Query: 85  GSLAVNSRISFESYF----DQIIRKSGDFDYRKITTKHIRSGVES-RKHTPSSAIQFLTS 139
            + +  +  ++             + G F +R    +  +  +   +K    S   +LT+
Sbjct: 35  KNKSPETVGTYRRALHEFERWFATQRGQFRFRVADVQRYKQYLMREKKLHQVSVSTYLTA 94

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKT-EGIRPWTKEDMQQFKSFWS-----EGSQPR 193
           +R   ++ V    +  NP  +V+  +R +       T+ +++Q  +         G + R
Sbjct: 95  LRRFCQYLVDIGLLPENPARTVKGNRRPSSHSRSVLTRVEIEQLLAVLDQDTSQIGLRDR 154

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTG---TIITVELPDGFMKLLAM- 247
                +L++GL   +  RA V+ L   +    ++ Q  G       V L    ++ L   
Sbjct: 155 AIVHMMLFAGLSEVEIVRADVRDLDQTLLGWYLRVQGKGHTAKDQQVPLDPPVVEALQAY 214

Query: 248 -----TPIGKETFFINND----KQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSAT 295
                     E  F+++      Q++N        K     AG+ +   + H +   +A 
Sbjct: 215 LNTRVPLHPGEPLFVSHGHRSEGQRLNTRSVRSRIKQHLEAAGITRRGVTPHSLTHTAAL 274

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
           I  + G +  E+       T++    Y +    +    +  +R+
Sbjct: 275 IWLNQGMSIEEVQRRMRHGTLETTMIYYRKQGLLNRDPEELKRL 318


>gi|54023527|ref|YP_117769.1| putative phage integrase [Nocardia farcinica IFM 10152]
 gi|54015035|dbj|BAD56405.1| putative phage integrase [Nocardia farcinica IFM 10152]
          Length = 290

 Score = 99.3 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 46/279 (16%), Positives = 86/279 (30%), Gaps = 18/279 (6%)

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
           +K P +    +  Y        L   +      + ++I R+ G      IT   + S   
Sbjct: 3   KKTPASWAPTLEAYALHMAAAGLPPTTIRLRCKHLERIAREIGRAGPWTITADQLVSWAG 62

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
            +     +   + +S    ++W +       NP    E P+       P    D     +
Sbjct: 63  QQNWATETRRSYRSSCMKFWRWGIASGLTDTNPVE--EWPRIPGAAANPRPAPDRVYRAA 120

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---NNIFSIKTQKTGTIITVELPDGF 241
             +   + R+        GLR ++  +  ++ L    +    I   K G    + +PD  
Sbjct: 121 LAAADPRTRIMLRLAAECGLRRAEVAQVHIRDLVEDFDGWVLIVHGKGGKDRRLPIPDDI 180

Query: 242 MKLLAMTPIGKET---------FFINNDKQKMNATQFSIWFKAKATK---AGVNKSAHGV 289
             L+     G             F   D   ++A    +       K   +G   + H +
Sbjct: 181 AALIRAGARGHSPHDHTPSRGWLFPGQDHGHLSAAHVGVLCSRALAKVQTSGQVWTMHKL 240

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           R   AT +  A      +    G  +V   + YT   DR
Sbjct: 241 RHRFATTAYRATRDIRAVQEALGHSSVATTQIYT-AVDR 278


>gi|222446012|ref|ZP_03608527.1| hypothetical protein METSMIALI_01661 [Methanobrevibacter smithii
           DSM 2375]
 gi|261349449|ref|ZP_05974866.1| integrase-recombinase protein [Methanobrevibacter smithii DSM 2374]
 gi|222435577|gb|EEE42742.1| hypothetical protein METSMIALI_01661 [Methanobrevibacter smithii
           DSM 2375]
 gi|288861812|gb|EFC94110.1| integrase-recombinase protein [Methanobrevibacter smithii DSM 2374]
          Length = 302

 Score = 99.3 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 44/279 (15%), Positives = 90/279 (32%), Gaps = 35/279 (12%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQ 135
             Y  S    + + N+  ++ S   +               K       S        ++
Sbjct: 31  ESYITSLKNNNYSQNTIKTYSSIIHKFTTYL-KNQIAIYNEKEFIKYFNSYIL----YLK 85

Query: 136 FLTSMRVLFKWAVR---QEYVAINPC---LSVERPKRKTEGIRPWTKEDMQQFKS--FWS 187
            + ++   + + V    ++++  N      S+  PKR        T+++++Q      W 
Sbjct: 86  QVKNVSQNYIYLVTVVVKKFLEFNNIHFLDSITTPKRIKSPPNFLTQKEVKQLLDSITWD 145

Query: 188 EGS----------QPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITV 235
           E S          + +L    L  SGLR S+     V ++  +    SI   K  + +  
Sbjct: 146 ENSDSDFRIITKLRDKLIVTLLYSSGLRVSELINLTVDNVNFEGKQLSI-VGKNNSRVI- 203

Query: 236 ELPDG-----FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288
            L D        K L           +N     +      +  K    ++G+ K  + H 
Sbjct: 204 -LLDESTKQLIQKYLEKRTQKSNYLVVNKSGNPLTPRYVQLMIKKYGNESGIEKKITPHI 262

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           +R   AT   + G     +    G   +   + Y++ A+
Sbjct: 263 LRHSYATHLFEQGVNIKIIQQLLGHSNLSTTQIYSQDAN 301


>gi|75812296|ref|YP_319915.1| Phage integrase [Anabaena variabilis ATCC 29413]
 gi|75705052|gb|ABA24726.1| Phage integrase [Anabaena variabilis ATCC 29413]
          Length = 320

 Score = 99.3 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 54/284 (19%), Positives = 107/284 (37%), Gaps = 33/284 (11%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGD-------FDYRKITTKHIRSGVES--RKHTPSSAIQ 135
             LA+ SR++ E   + I R   +        ++  +  +H  +   +  +K+ P++  +
Sbjct: 27  AGLALGSRLTIEQALNAIARLISNGECDAYTLNWAALRYQHTAAIRTALMQKYAPATTNK 86

Query: 136 FLTSMRVLFKWAVRQEYVA-INPCLSVE----RPKRKTEGIRPWTKEDMQQFKSFW---- 186
            L ++R + K A+R E +   +   +V+    + KRK  G R  T  ++           
Sbjct: 87  MLCALRRVLKEALRLELMDATDYAKAVDFKNVKVKRKLRG-RALTSAEIAALIEVCLCDP 145

Query: 187 -SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKL 244
              G +       L  +G+R ++     ++ L  N    I+  K     TV LP   M L
Sbjct: 146 TPCGVRDAALIAILRGAGVRRAEVVNLELRDLSSNGALEIRQGKGDKDRTVYLPTAAMAL 205

Query: 245 ----LAMTPIGKETFFINNDK------QKMNATQFSIWFKAKATKAGVNK-SAHGVRKFS 293
               L +             K      ++M      +  + +A+++GV   S H  R+  
Sbjct: 206 VEDWLRVRGRKTGALLCPIRKGGQVQLRRMTPQAVLLIVRKRASESGVESFSPHDFRRTF 265

Query: 294 ATISADAGATAHELMATYGWKTVDQAETY-TKGADRIRLGIKNS 336
            +   D+G     +    G  +      Y  +G +  RL ++N 
Sbjct: 266 CSDLLDSGTDIVTVQKLAGHASPATTSKYDRRGEETKRLAVENL 309


>gi|294102004|ref|YP_003553862.1| integrase family protein [Aminobacterium colombiense DSM 12261]
 gi|293616984|gb|ADE57138.1| integrase family protein [Aminobacterium colombiense DSM 12261]
          Length = 294

 Score = 99.3 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 37/259 (14%), Positives = 81/259 (31%), Gaps = 26/259 (10%)

Query: 88  AVNSRISFESYFDQIIR-----KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRV 142
           + N+ +++       +          +   +   +  +  +       SS  + + S+R 
Sbjct: 24  SENTILAYNRDIKAWLDFCDKNDQPAYPPNQTYLERYQRSLHEEGKKRSSQQRAIASLRS 83

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEG---IRPWTKEDMQQFKSFWSEGS----QPRLA 195
             ++   ++ V       V  P    +G        + ++++     S  S    + R  
Sbjct: 84  WLRYLDSEKLVE----EEVTLPTLPLKGDSLPHILNEGEVERIFEACSGNSFLALRDRAI 139

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMK-----LLAMTP 249
            E     GLR S+ C   ++ +  +  +++   K G    +       +     +    P
Sbjct: 140 LETAYGCGLRASELCTICLRDIDFSGRTLRIFGKGGKERIIPFLGEVSRRVGFYMEKARP 199

Query: 250 IGK-ETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGATAH 305
               +  FI+     +         K +   AG++ S    H +R   AT     G    
Sbjct: 200 DAHVQELFISKTGNPLRREDIWRIVKKRGAAAGISSSRLFPHILRHSFATHLLRRGMDLR 259

Query: 306 ELMATYGWKTVDQAETYTK 324
            L    G  T+   E Y  
Sbjct: 260 TLQELLGHATIATTEKYVH 278


>gi|78355667|ref|YP_387116.1| hypothetical protein Dde_0620 [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78218072|gb|ABB37421.1| hypothetical protein Dde_0620 [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 281

 Score = 99.3 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 41/277 (14%), Positives = 92/277 (33%), Gaps = 16/277 (5%)

Query: 75  ISEYRKSAHWGSLAVNS----RISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHT 129
            +EY       +    +    R +F  +FD +I +         +        V    H+
Sbjct: 6   WAEYYVDHAEQTWPHKTFDEKRRAFRRFFDTKICKPGDPITTVSVEKASKVLAVLKEHHS 65

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVA-INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
            ++  +   ++   + W ++   +   NP    +R     +       ED++        
Sbjct: 66  GNNLNRMRKNLIAAWNWGIKNHKIPAQNPFALTDRSSEIIKLRYVPPMEDLKAVVDV--A 123

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---NNIFSIKTQKTGTIIT---VELPDGFM 242
             + RL      Y+  R  +  R     +    N I     ++ G  +    + +     
Sbjct: 124 AGEQRLMLLTAFYTAARKCELFRLRWTDVDFASNKIGLWTKKRKGGNLELDLMPMAKPLR 183

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG 301
            LL     G E+  +  D+   +    + W K    +AGV     HG+R  +A+   ++G
Sbjct: 184 SLLEEHHRGAESEHVF-DQSPHSQNSNNRWLKELCKEAGVKAFGFHGIRHLAASYGIESG 242

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338
           A+  ++      K+ +    Y +   +    ++    
Sbjct: 243 ASIVDVQELLRHKSANVTARYIRRLKKGNRAVEALEM 279


>gi|296450797|ref|ZP_06892548.1| integrase/recombinase [Clostridium difficile NAP08]
 gi|296260358|gb|EFH07202.1| integrase/recombinase [Clostridium difficile NAP08]
          Length = 280

 Score = 99.3 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 37/263 (14%), Positives = 92/263 (34%), Gaps = 18/263 (6%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLTSMR 141
            +L  ++  ++       +  +G   ++++T       +         P +   +  ++R
Sbjct: 16  KNLKESTTKAYCHALSPFLNATG-KPWQELTVADADDYLTTKRRMGILPETYNHYYGALR 74

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201
            ++K  ++  +        + R KR        ++E++       +   + +  F  +  
Sbjct: 75  FMYKRVLKLNWDED----EIPRMKRDRSLPTVLSREEVNAILDVTT-NLKYKAIFAVMYS 129

Query: 202 SGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLL-----AMTPIGKET 254
            GLR S++       +   N+   I+  K        L D  + +L              
Sbjct: 130 GGLRVSEATHLHYDDISRSNHSIHIRNTKNRMDRYTILADRTLDILTQYWFQCQRPRNIL 189

Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYG 312
           F      + ++ +  +   +  + +AG+ K  ++H  R   A+   + G     + A  G
Sbjct: 190 FPSQTTGEYLDISAVNQVLRRSSERAGIPKHVTSHAFRHSFASHLLEDGCDIKYIQALLG 249

Query: 313 WKTVDQAETYTKGADRIRLGIKN 335
                  E Y   +++  LGIK+
Sbjct: 250 HLDPKSTEIYLHVSNKTLLGIKS 272


>gi|4520380|dbj|BAA75916.1| similar to integrase [Pseudomonas putida]
          Length = 399

 Score = 99.3 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 58/356 (16%), Positives = 118/356 (33%), Gaps = 40/356 (11%)

Query: 7   LPPFVTKERT-RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS-- 63
           LPP + ++   R+G   Y +R     R+      ++  I   +SA          +++  
Sbjct: 44  LPPNLYRKTDKRNGVTYYTYRDPVSDRMFGLGSDKAKAIAEAVSANMALQVAPPTLSARI 103

Query: 64  ---PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
              P          I EY        L+ +S  +     +++ +  G+   R +TT  I 
Sbjct: 104 APEPSAPDRKFSEWIVEYFADLKDRELSESSMRNLRMRLNRVEKAFGERGIRTLTTMDIA 163

Query: 121 SGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
             + +  ++     A    + +R LF  A+ + +V  NP  + +  + K +  R  T E 
Sbjct: 164 DYLSTYVKEGKAQMARAMRSLLRDLFMGAMARGWVDYNPVEATKAARVKIKRQR-LTLEL 222

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE-- 236
            +      ++    R A E  L +G R  D      +   +    +   KTG  + +   
Sbjct: 223 WKAIYEEAAQPWLKR-AMELALITGQRREDIASFVFRDEVDGFLQVVQSKTGARLRISTS 281

Query: 237 -----LPDGFMKLLAM---------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
                +     +++                 T         +     S  F A   +A V
Sbjct: 282 VTLECISLSLGEVIRRCRDRVLSKHLVHHHRTISRAKAGSPIMLDTISKEFAAARDRAAV 341

Query: 283 NK---------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY--TKGAD 327
                      + H  R  +A +  + G    +     G ++    + Y  ++GA+
Sbjct: 342 KLGLDLGASPPTFHEQRSLAARLHDEEG---RDAQRLLGHRSAKMTDLYRDSRGAE 394


>gi|294791010|ref|ZP_06756168.1| putative tyrosine recombinase XerC [Scardovia inopinata F0304]
 gi|294458907|gb|EFG27260.1| putative tyrosine recombinase XerC [Scardovia inopinata F0304]
          Length = 322

 Score = 99.3 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 48/291 (16%), Positives = 89/291 (30%), Gaps = 48/291 (16%)

Query: 82  AHWGSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGV--ESRKHTPSSAIQF 136
           A    L+ ++R ++    D     +   G     K+ T  +R  +  ESR+   SS  + 
Sbjct: 15  AENQGLSQHTRTAYRGDVDQCLHFLSLRGVDSIEKVNTDLLRMWMAYESRRLAKSSLARK 74

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-------- 188
           + ++R  F +         +P   +  P+         TK+          E        
Sbjct: 75  IVAVRGFFAYTYVHGLSHSDPAADLGTPRLPQTLPSVLTKKQASALMDKAEEVYQTDRKE 134

Query: 189 -------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-----E 236
                    +     E L  +G+R ++        +  +  ++K    G    V      
Sbjct: 135 QSGRTAIDLRNDAIVELLYATGIRVAELVGLNTGDIDFSSRTVKVTGKGNKQRVVPFGAP 194

Query: 237 LPDGFMKLLAMTPI----------------------GKETFFINNDKQKMNATQFSIWFK 274
                 + L                             E  F+ +   ++N  Q      
Sbjct: 195 ASHALQEWLNRGRPSLVRKNSADGSSAGSKKNEDRQDSEAVFVGSRGGRINQRQVRQVVH 254

Query: 275 AKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             A +AGV + S H +R  +AT   D GA   E+    G  ++   + YT 
Sbjct: 255 RLAAEAGVPDISPHSLRHSAATHLLDGGADLREVQEMLGHSSLATTQRYTH 305


>gi|114775560|ref|ZP_01451128.1| site-specific recombinase, phage integrase family protein
           [Mariprofundus ferrooxydans PV-1]
 gi|114553671|gb|EAU56052.1| site-specific recombinase, phage integrase family protein
           [Mariprofundus ferrooxydans PV-1]
          Length = 331

 Score = 99.3 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 54/327 (16%), Positives = 110/327 (33%), Gaps = 22/327 (6%)

Query: 11  VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPA---YMSALTGSTPKREYINSPRKK 67
           + K + ++G+  Y  +  H  ++      +  F      + + +     + +++++   +
Sbjct: 3   IQKRKWKNGRTTYRVQVYHRGKVVADATFD--FRRDAQLFEAEVKTKLQRGDFVDTRLAE 60

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR- 126
            T     +  Y ++         +R                    KI T  I    +SR 
Sbjct: 61  RTLFGEALERYAENI--VPRKKGARQEMSRVRTLSRSSLVRLPLSKIRTPDIIKYRDSRL 118

Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQ---EYVAINP-CLSV-ERPKRKTEGIRPWTKEDMQ 180
            +  P+S    L  +  LF  A R     Y++ NP    V    K+     R    E+ Q
Sbjct: 119 KEVGPNSVRLELAVISHLFTVASRDWGMNYLS-NPVARGVMPSVKQTARDRRLQPGEEDQ 177

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
             ++    G        F L + +R ++      + +  NI  +   K G    V L   
Sbjct: 178 LMQACKEYGGVIGDIVMFALETAMRRAEIASLRWEDIHGNIARLHDTKNGERRDVPLSSR 237

Query: 241 FMKLLAMTPIGKETFFINNDKQKMN--ATQFSIWFKAKATKAGV-NKSAHGVRKFSATIS 297
             +++      +      NDK+         S  F      AG+ +   H +R  + +  
Sbjct: 238 AREIIHRRAKVRSL----NDKRVFGIAPNGISQAFSRVCKHAGIVDLRFHDLRHEATSRL 293

Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324
            + G    ++ +  G KT+   + YT 
Sbjct: 294 FERGLNPMQVASITGHKTLQMLKRYTH 320


>gi|34540214|ref|NP_904693.1| phage integrase family site specific recombinase [Porphyromonas
           gingivalis W83]
 gi|34396526|gb|AAQ65592.1| site-specific recombinase, phage integrase family/ribosomal subunit
           interface protein [Porphyromonas gingivalis W83]
          Length = 400

 Score = 99.3 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 42/255 (16%), Positives = 85/255 (33%), Gaps = 23/255 (9%)

Query: 91  SRISFESYFDQIIRKSGD-FDYRKITTKHIRSGV---ESRKHTPSSAIQFLTSMRVLFKW 146
                  Y       +G+ F+  +      R+ +          SS  + L++++  +K+
Sbjct: 29  YAQDLNRYAAFFSEHTGEVFEPSERDKDVARAWLFSLMEAGQKSSSVQRRLSALKSFYKY 88

Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-----FKSFWSEGSQPRLAFEFLLY 201
            V+   +  +P   +  PK++          +M++      +    E  + RL  E L  
Sbjct: 89  MVKIGLIGQSPVRMLRGPKKERPLPVFVPNNEMEKVLNKPIREDDFEAVRDRLILETLYE 148

Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLL------AMTPIGK-E 253
            GLR S+        +++    I+   K      V        ++          +GK +
Sbjct: 149 VGLRRSEIATLKDSAVEDKAGCIRIIGKRNKERIVPFGKRLQDMIDNYRNIREEKVGKSD 208

Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGVNK----SAHGVRKFSATISADAGATAHELMA 309
            FF++ D + +         +     A V      S H +R   AT   + GA    +  
Sbjct: 209 FFFVSLDGRPLTGEVVYKIVR--TALANVPHLTKRSPHVLRHSFATEMLNHGADLISVKE 266

Query: 310 TYGWKTVDQAETYTK 324
             G  ++     YT 
Sbjct: 267 LLGHDSLSTTVQYTH 281


>gi|224373197|ref|YP_002607569.1| phage integrase [Nautilia profundicola AmH]
 gi|223589506|gb|ACM93242.1| phage integrase [Nautilia profundicola AmH]
          Length = 301

 Score = 99.3 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 52/272 (19%), Positives = 102/272 (37%), Gaps = 21/272 (7%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH 128
           T   L +EY +     ++  ++  + +SY+      K G         K  +  V     
Sbjct: 12  TFDELFAEYCEIMK-HTMTSHTLRTKQSYYKTHFGHKYGHIIITDFKYKDAQLFVNELLD 70

Query: 129 T---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK-- 183
               P +    +   +VL+K+A+  EY   NP   V+ PK        +T E++++F   
Sbjct: 71  KGLQPKTVKNIVDIFKVLYKYAIMNEYCEKNPFEFVQLPKFDNRIYFNFTDEEIKRFIYT 130

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSI---KTQKTGTIITVELPD 239
           +      + R  F FLL  G R ++       H+   N       K  K   +++ ++ D
Sbjct: 131 AINFPNVKFRGIFTFLL-HGRRLNEVLSLTWDHIDFENKQYFIPPKINKAKKLMSYQMTD 189

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNA------TQFSIWFKAKATKAGVNK--SAHGVRK 291
               +L    I  +     ++    ++            FK     A +NK    H +R 
Sbjct: 190 ILEDILLRQKIINDVECPRSEYVFPSSVTCQKIKDIRKQFKKLLQYANINKKMRIHDIRH 249

Query: 292 FSATISADA-GATAHELMATYGWKTVDQAETY 322
             A+ + ++ G +  E+  T G  +++  + Y
Sbjct: 250 LVASYAINSLGLSVEEVSYTLGHTSIEITQRY 281


>gi|157827676|ref|YP_001496740.1| site-specific tyrosine recombinase XerC [Rickettsia bellii OSU
           85-389]
 gi|166918898|sp|A8GXV3|XERC_RICB8 RecName: Full=Tyrosine recombinase xerC
 gi|157802980|gb|ABV79703.1| site-specific tyrosine recombinase XerC [Rickettsia bellii OSU
           85-389]
          Length = 305

 Score = 99.3 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 47/282 (16%), Positives = 106/282 (37%), Gaps = 28/282 (9%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD--------YRKITTKHIRS 121
           ++ LI +++K      + + ++ IS+ +     +     ++         +    + +RS
Sbjct: 6   IQELIIKWQKYLSLQKNYSNHTLISYNNDLKHFLEFMNYYNSDIVTMDYIKAADIRLMRS 65

Query: 122 GVESRK---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
            +  RK      SS  + L++++  +K+  +   +  +   S++ PK+     +  ++E+
Sbjct: 66  WLAKRKCDNFVTSSIARGLSAIKNFYKFLEKTAELHNHVVFSIKSPKKSKLLPKALSEEE 125

Query: 179 -------MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
                  ++++ +      + +     +  SGLR S++      HLQN  F     K   
Sbjct: 126 VNISLDHIEEYGNSQWIEIRNKALLVLIYASGLRISEALSITKLHLQNLEFIKIMGKGSK 185

Query: 232 IITVELPDGFM----KLLAMTP---IGKETFFINNDKQKMNATQFSIWFKAKATKAGV-- 282
              +           + L   P      E  F     +K+    F+          G+  
Sbjct: 186 ERVIPWLAIARNLITEYLEKLPYELKDDEPIFRGKQGKKLQPPVFNRELIKLKRFYGLPE 245

Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           + SAH  R   A+   + GA    +    G K++   ++YTK
Sbjct: 246 HLSAHSFRHSFASHLLENGADLRSIQELLGHKSLSTTQSYTK 287


>gi|71064781|ref|YP_263508.1| tyrosine recombinase XerC subunit [Psychrobacter arcticus 273-4]
 gi|71037766|gb|AAZ18074.1| tyrosine recombinase XerC subunit [Psychrobacter arcticus 273-4]
          Length = 345

 Score = 99.3 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 36/236 (15%), Positives = 74/236 (31%), Gaps = 21/236 (8%)

Query: 116 TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
            +HI   ++  K   +S  Q L+++R  + W + ++   INP    +  +          
Sbjct: 89  AQHISQRLDEDKLALASVQQELSAIRHFYGWLIEEDLARINPTTGYQLKRSPRPLPSIAD 148

Query: 176 KEDMQQFKSFWSEGS--------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227
            + + Q        +        + +  FE L  SGLR  +     +  +      ++  
Sbjct: 149 VDLLTQLLDQEIPDTPEQARLWLRDKAMFELLYSSGLRVGELVALDIADVDLADLRVRVT 208

Query: 228 KTGTIIT-VELPDGFMKLLAM---------TPIGKETFFINNDKQKMNATQFSIWFKAKA 277
             G     V L       +             +    F       +++        K  A
Sbjct: 209 GKGNKTRLVPLGIKAADAIRRYLPHRNLWVEQMDTALFISEKLGTRLSTRAVQQRLKVAA 268

Query: 278 TKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           T+AG+ ++   H +R   A+           +    G   +   + YT   D  +L
Sbjct: 269 TRAGIAQNMYPHLLRHCFASHMLSGSGDLRAVQEMLGHSDISTTQIYTH-VDFAKL 323


>gi|296114852|ref|ZP_06833500.1| site-specific tyrosine recombinase XerC [Gluconacetobacter hansenii
           ATCC 23769]
 gi|295978558|gb|EFG85288.1| site-specific tyrosine recombinase XerC [Gluconacetobacter hansenii
           ATCC 23769]
          Length = 324

 Score = 99.3 bits (246), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 52/306 (16%), Positives = 92/306 (30%), Gaps = 50/306 (16%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGV--- 123
           L W+  E R S          R     + D +    G          ++   +R+ +   
Sbjct: 11  LDWMADERRASPRTT---EAYRGDLHRFLDFLGGHLGGEVDVAALDALSLADLRAWLAFE 67

Query: 124 ESRKHTPSSAIQF-------------LTSMRVLFKWAVRQEYVAINPC-LSVERPKRKTE 169
             +   P    +              ++++R  F++  R  +   NP    +  P+ K  
Sbjct: 68  HDQALRPRPGHRVTTRDRAARTRARRVSALRSFFRYLARH-HGVDNPAPALLAAPRVKKT 126

Query: 170 GIRPWTKED-------MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---- 218
             RP + ED       + +         +    F  L   GLR S++    V  L     
Sbjct: 127 LPRPLSHEDALEVPQGVGEIAHTPMARMRDGALFLLLYGCGLRISEALSLDVADLDRAMA 186

Query: 219 -----NNIFSIKTQKTGTIITVELPDGFMKLLA------MTPIGKETFFINNDKQKMNAT 267
                +        K G    V L     + L         P+     F      ++ A 
Sbjct: 187 LGGGADEGVLRIMGKGGKERMVPLLPVVGRALREWRRHHPAPVAGAPLFPGVRGGRLQAA 246

Query: 268 QFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
                 +     AG+  + + H +R   AT   + GA    +    G  ++   + YT  
Sbjct: 247 VAQRAMRTWRHMAGLPDHATPHALRHSFATHLMEGGADLRVIQELLGHASLSTTQRYT-L 305

Query: 326 ADRIRL 331
           AD  RL
Sbjct: 306 ADESRL 311


>gi|164688499|ref|ZP_02212527.1| hypothetical protein CLOBAR_02144 [Clostridium bartlettii DSM
           16795]
 gi|164602912|gb|EDQ96377.1| hypothetical protein CLOBAR_02144 [Clostridium bartlettii DSM
           16795]
          Length = 302

 Score = 99.3 bits (246), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 43/254 (16%), Positives = 90/254 (35%), Gaps = 21/254 (8%)

Query: 89  VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKW 146
             ++  +     Q  +     D   +  +  +  + S + T   S++ +  + +   + +
Sbjct: 24  PKTKKDYLLKIIQFKKFLEGKDLLDVNKEDCQKFMCSIRETYAKSTSEKIYSYIHSFYSF 83

Query: 147 AVRQEYVAINPCLSVERPK--RKTEGIRPWTKEDMQQF-KSFWSEGSQPRLAFEFLLYSG 203
             R +++ INP   VE+P   R        + +++ +   S +   ++ RL   FL  +G
Sbjct: 84  LQRNKHIEINPFSFVEKPIVSRDKGKDDVLSIQEINKLIDSLYKLNARDRLIMVFLTTTG 143

Query: 204 LRCSDSCRAGVQHL---QNNIFSIKTQKTGTIITVELPDGFMKLLA-----------MTP 249
              ++      + L   +++ + ++  K      V+L     KL+            + P
Sbjct: 144 CMLNELVDVKWKDLIVDEDDNYYVRLGKGKKERVVKLHPYCFKLIEDYRYHSGLSEIILP 203

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELM 308
                 F       +      +      + AG+ N SA  +R   A IS   GA   E+ 
Sbjct: 204 TDDF-IFTTQKSNSITDRNVRVIVHKAFSLAGLENYSAKDLRHSYAAISLLLGADKEEIQ 262

Query: 309 ATYGWKTVDQAETY 322
              GW     A  Y
Sbjct: 263 KQLGWSDKYYAIRY 276


>gi|291534339|emb|CBL07451.1| Site-specific recombinase XerD [Roseburia intestinalis M50/1]
          Length = 317

 Score = 99.3 bits (246), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 42/274 (15%), Positives = 100/274 (36%), Gaps = 18/274 (6%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK---H 128
           K +    R  A   +L   +   + S     +R  G  +   +T +   S + +++    
Sbjct: 3   KDIFESIRNEAEKRNLRERTIQLYCSDVSYFLRWIG-KNVSDLTLEDAESFLTAKRLEGR 61

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           +P +   + ++++ L+K  ++  +       +V   KR+       +++++         
Sbjct: 62  SPETHNHYRSAIKFLYKKVLKTVWDDD----TVPAMKRERNLPAVLSRDEINAIIDATP- 116

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL------PDGFM 242
             + +     +  SGLR S+        +     +I  ++T   I           D   
Sbjct: 117 NLKHKAIIATMYSSGLRVSEVVHLHYDDISRTNMTIHVRETKGRIDRYTILSQKNLDLLT 176

Query: 243 KLLAMTPIGKETFFINND-KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
           +        K+  F ++     ++    + +FK  A  AG+N+  S+H  R   A+   +
Sbjct: 177 EYWYKCGRPKDILFPSSWSGGYLDIASVNQFFKKSAKLAGINRHVSSHACRHSFASHLFE 236

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           +G     + +  G       + Y   +++  LGI
Sbjct: 237 SGTDIKYIQSLLGHVDPRSTDVYLHVSNKTLLGI 270


>gi|154492484|ref|ZP_02032110.1| hypothetical protein PARMER_02118 [Parabacteroides merdae ATCC
           43184]
 gi|254881869|ref|ZP_05254579.1| phage integrase [Bacteroides sp. 4_3_47FAA]
 gi|154087709|gb|EDN86754.1| hypothetical protein PARMER_02118 [Parabacteroides merdae ATCC
           43184]
 gi|254834662|gb|EET14971.1| phage integrase [Bacteroides sp. 4_3_47FAA]
          Length = 330

 Score = 99.3 bits (246), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 38/259 (14%), Positives = 91/259 (35%), Gaps = 15/259 (5%)

Query: 91  SRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----SRKHTPSSAIQFLTSMRVLFKW 146
           +   + S   Q+ +K         TT+ IR+ +       K +  +           F W
Sbjct: 72  TIKYYGSTIRQLFKKMPKK-VTDYTTEDIRAYLAVFQRKNKSSRVTIDNIRRIFSSFFAW 130

Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRC 206
              ++Y+  +P   + + K  T+     + E+++Q +   +E  +     + L  +G+R 
Sbjct: 131 LEEEDYIIKSPVRRIHKVKTGTQVKEVLSDENIEQLRDSCTE-IRDLAIIDILASTGMRV 189

Query: 207 SDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDG----FMKLLAMTPIGKETFFINNDK 261
            +  +   + +  N    I   K      V           + LA      +  F++  K
Sbjct: 190 GELVKLNREDINFNERECIVFGKGNKERIVYFNARAKIHLQQYLASRKDRNKALFVSLAK 249

Query: 262 --QKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
             +++  +      +     A + +   H  R+  AT++ D G    ++    G   +D 
Sbjct: 250 PHKRLGISGVETRLRKLGRSAKIVRVHPHKFRRTLATMAIDKGMPVEQVQRLLGHVKIDT 309

Query: 319 AETYTKGADRIRLGIKNSR 337
              Y    ++  + + + +
Sbjct: 310 TMHYA-MVNQSNVKLSHRK 327


>gi|134288747|ref|YP_001111041.1| gp10, site-specific recombinase, phage integrase family
           [Burkholderia phage phiE202]
 gi|134131960|gb|ABO60708.1| gp10, site-specific recombinase, phage integrase family
           [Burkholderia phage phiE202]
          Length = 393

 Score = 99.3 bits (246), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 43/320 (13%), Positives = 100/320 (31%), Gaps = 23/320 (7%)

Query: 18  HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISE 77
                ++     G RIR             ++A   S   R+     R    T    +  
Sbjct: 8   KNGPWWFDLSIDGSRIRQSSGTSDRRAAEELAAKVASDYWRQKKLGERP-TVTWDAAVVH 66

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--------T 129
           + K     +    S  + +     +  +    + R I  + I++ +E++           
Sbjct: 67  WLK----QNQHQRSLETTKQRLRWLTDQLKGENVRNIDRERIQALIETKAAEKYRGSPVA 122

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            ++  + + ++ V+      + ++   P   + + +  +  +   T+   Q+        
Sbjct: 123 GATVNRHMAALSVILHHCHAEGWIDAVP--PIRKLRENSARLTWLTRAQAQRLLEELP-- 178

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGFMKLL 245
           +  R    F L +GLR S+        +              K G +I+V L +  + +L
Sbjct: 179 THLRQMARFALATGLRESNVRLLEWAQVDRERALAWIHADQAKAGKVISVPLNEDALGVL 238

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATA 304
                  + +        +    ++  ++    +AG+     H +R   A+    AG   
Sbjct: 239 REQQGQHKRYVFVYKGAPIGRI-YNHAWQKACVRAGLSGLRFHDLRHTWASWHVQAGTPL 297

Query: 305 HELMATYGWKTVDQAETYTK 324
             L    GW +      Y  
Sbjct: 298 PILQQLGGWASYQMVLRYAH 317


>gi|124268171|ref|YP_001022175.1| putative site specific integrase [Methylibium petroleiphilum PM1]
 gi|124260946|gb|ABM95940.1| putative site specific integrase [Methylibium petroleiphilum PM1]
          Length = 318

 Score = 99.3 bits (246), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 47/271 (17%), Positives = 90/271 (33%), Gaps = 28/271 (10%)

Query: 89  VNSRISFES---YFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFK 145
            N+R ++     +F     + G  D R++   H+   VE       S  Q L ++R LF 
Sbjct: 40  PNTRKAYARAGQHFADWCARFGIGDVRQVQPVHVALYVEQLDLAAPSVKQRLAALRALFD 99

Query: 146 WAVRQEYVAINPCLSVERPK--RKTEGIRPWTKED----MQQFKSFWSEGSQPRLAFEFL 199
           W V  + + INP  +V  P+   KT      +  +    ++   +    G + R     +
Sbjct: 100 WLVVGQVMPINPAAAVRGPRYSVKTGKTPVLSASEVRDLVESIDAESLVGMRDRALIGTM 159

Query: 200 LYSGLRCSDSCRAGVQHL--QNNIFSIKT-QKTGTIITVELPDGFMKLLA-------MTP 249
           +Y+  R     R  V+ +  Q     ++  +K G    +       + L        +  
Sbjct: 160 VYTFARVGAVTRLRVEDVYTQRRRLWVRLDEKGGKRHEMPCHHRLEEWLYDYLEAAGIAD 219

Query: 250 IGKETFFINND-------KQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADA 300
                 F +          + M+        + +A  AG+  +   H  R    T     
Sbjct: 220 DPGGPLFRSARAATDTLTSRPMSQADVYRMIRRRAEAAGIATAIGCHSFRATGITEYLLN 279

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRL 331
           G            ++      Y +  D+I+L
Sbjct: 280 GGKLEIAQQMANHESSRTTGLYDRRGDQIKL 310


>gi|309792261|ref|ZP_07686733.1| integrase domain-containing protein [Oscillochloris trichoides DG6]
 gi|308225802|gb|EFO79558.1| integrase domain-containing protein [Oscillochloris trichoides DG6]
          Length = 301

 Score = 99.3 bits (246), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 51/279 (18%), Positives = 93/279 (33%), Gaps = 32/279 (11%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLF 144
             L+ N+  S+            D     ITT  I+S ++SR   P +  + + S+   F
Sbjct: 12  QGLSGNTITSYRCDLRTAAGVV-DKPLETITTLDIQSFLDSRNEQPGTTNRRIASLGRFF 70

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPW-TKEDMQQFKSFWSEGSQP-RLAFEFLLYS 202
           +WAV + Y   NP   +          +P  ++ + +   +  +  SQP RL F  L   
Sbjct: 71  RWAVARGYCLYNPLEQIAGRYHTEHRPQPIVSEAERRALDTAIAACSQPYRLIFTLLREI 130

Query: 203 GLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDGF-----------MKLLAM 247
           G+R  +     V  +       +  ++  K+G    V L               M+ L  
Sbjct: 131 GVRTDEVLNLNVGDVILETGREVLLVQDTKSGNKRMVALTPDAMPRSLRGLRSWMRDLGP 190

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV----------NKSAHGVRKFSATIS 297
            P      F ++  ++ +       +      A +            + H +R  +A   
Sbjct: 191 NPAPDAPLFCSSRGKRASYDTLHRRWVQVCRAAHLIDLVEGKEQPRYTLHHLRHTAAAEL 250

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
             A      +    G +       Y   AD +R G  N+
Sbjct: 251 -IAFYPEQVVRRILGHRDPRSTRRY---ADIVRKGAHNA 285


>gi|293372459|ref|ZP_06618843.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|292632642|gb|EFF51236.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
          Length = 196

 Score = 99.3 bits (246), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 34/166 (20%), Positives = 56/166 (33%), Gaps = 18/166 (10%)

Query: 177 EDMQQFKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
           E++ +  S       EG + R   E L   GLR S+     +  L  +   IK +  G+ 
Sbjct: 2   EEIDRIISAVDRSKAEGQRNRAILETLYSCGLRVSELITLKLSDLYFDEGFIKVEGKGSK 61

Query: 233 IT-VELPDGFMKLLAMTPIG-----------KETFFINNDKQKMNATQFSIWFKAKATKA 280
              V +    +  + +                  F      + ++        K  A KA
Sbjct: 62  QRLVPISPRAINEIKLYIPDRNQIEVKKGHEDFVFVSQRRGKGLSRIMIFHMIKELAEKA 121

Query: 281 GVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           G+ K  S H  R   AT   + GA    +    G +++   E YT 
Sbjct: 122 GITKNISPHTFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYTH 167


>gi|126437019|ref|YP_001072710.1| phage integrase family protein [Mycobacterium sp. JLS]
 gi|126236819|gb|ABO00220.1| phage integrase family protein [Mycobacterium sp. JLS]
          Length = 424

 Score = 99.3 bits (246), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 59/334 (17%), Positives = 113/334 (33%), Gaps = 39/334 (11%)

Query: 19  GKI-IYYFRKGHGR-RIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76
           GK+  +  R        R           AY++ LT    + EY++ PRK   T   +  
Sbjct: 55  GKVSRWRVRWVDASGAERTKSFQRKPDAQAYLNGLTADVQRGEYVD-PRKSAETFGSVAE 113

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRSGVES------RKHT 129
           ++  +         +   + S  D + + K      ++I  +   + + +      ++ T
Sbjct: 114 QWFATK--QHRKPKTVAGYRSLLDTVVLPKWESVQLKRINYESYSTWLGALSVDGGQRGT 171

Query: 130 PSSAIQFLTS---MRVLFKWAVRQEYVAINPCLSVER----PKRKTEGIRPWTKEDMQQF 182
             SA +   +   +  + K+A R   VA N    ++R    P++     R  T  ++   
Sbjct: 172 GLSASRITQAHQLVGAVLKYAQRTGKVAKNVAFEIKRDEDLPEQGERERRYLTHAELLML 231

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--------------TQK 228
                      L      Y GLR  ++     +H+ + + +++              T K
Sbjct: 232 AKAADRFETLTLVLG---YCGLRFGEAVALRRRHVGDRMLTVRSSATAVTGKGIVESTTK 288

Query: 229 TGTIITVELPDGF-MKLLAMTPIGKETFFINNDKQKMNATQFSIW-FKAKATKAGVNK-S 285
           T     V +P+    KL A  P         + K          W F       G++   
Sbjct: 289 TKRDRHVPVPEPVWKKLKAELPADPNALVFPSRKGGFLPLGEYRWAFDNACADIGIDGLV 348

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
            HG+R  +A+++  AGA    +    G  T    
Sbjct: 349 PHGLRHTTASLAISAGANVKVVQRLLGHATAAMT 382


>gi|91204992|ref|YP_537347.1| site-specific tyrosine recombinase XerC [Rickettsia bellii
           RML369-C]
 gi|122990944|sp|Q1RK56|XERC_RICBR RecName: Full=Tyrosine recombinase xerC
 gi|91068536|gb|ABE04258.1| Tyrosine recombinase XerC [Rickettsia bellii RML369-C]
          Length = 305

 Score = 99.3 bits (246), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 47/282 (16%), Positives = 105/282 (37%), Gaps = 28/282 (9%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD--------YRKITTKHIRS 121
           ++ LI +++K      + + ++ IS+ +     +     ++         +    + +RS
Sbjct: 6   IQELIIKWQKYLSLQKNYSNHTLISYNNDLKHFLEFMNYYNSDIVTMDYIKAADIRLMRS 65

Query: 122 GVESRK---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
            +  RK      SS  + L++++  +K+  +   +  +   S++ PK+     +  ++E+
Sbjct: 66  WLAKRKCDNFVTSSIARGLSAIKNFYKFLEKTAELHNHVVFSIKSPKKSKLLPKALSEEE 125

Query: 179 -------MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
                  ++++ +      + +     +  SGLR S++      HLQN  F     K   
Sbjct: 126 VNISLDHIEEYGNSQWIEIRNKALLVLIYASGLRISEALSITKLHLQNLEFIKIMGKGSK 185

Query: 232 IITVELPDGFM----KLLAMTP---IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN- 283
              +           + L   P      E  F     +K+    F+          G+  
Sbjct: 186 ERVIPWLAIARNLITEYLEKLPYELKDDEPIFRGKQGKKLQPPVFNRELIKLKRFYGLPE 245

Query: 284 -KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             SAH  R   A+   + GA    +    G K++   ++YTK
Sbjct: 246 YLSAHSFRHSFASHLLENGADLRSIQELLGHKSLSTTQSYTK 287


>gi|284993087|ref|YP_003411641.1| integrase family protein [Geodermatophilus obscurus DSM 43160]
 gi|284066332|gb|ADB77270.1| integrase family protein [Geodermatophilus obscurus DSM 43160]
          Length = 404

 Score = 99.3 bits (246), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 45/320 (14%), Positives = 99/320 (30%), Gaps = 38/320 (11%)

Query: 53  GSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDY 111
                R           T+   ++ + +    G     +  S+ ++ ++ I+   G    
Sbjct: 27  ADVANRTAQGVRVDDRETVASFLARWLQ-VKAGEAKPTTVRSYRAHVERVIVPAIGHVPI 85

Query: 112 RKITTKHIRSGV--ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
            ++  +H+   +   +    P +  +   ++R    + V+   +  N   +V  P     
Sbjct: 86  EELRAEHVEQLLVDAANGRGPVTVRRIHATLRSALSYGVKTRRLPFNVASNVTPPNGIRP 145

Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----------- 218
            ++PW+  ++  F     E  +    FE +   GLR  ++       L            
Sbjct: 146 EVQPWSAAELAAFL-RHVETDRLGPLFEVIAACGLRRGEALGLRWSDLDLANRTARIRQT 204

Query: 219 ----NNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIG--------------KETFFINN 259
                      T KT  +  TV L +  ++ L    +G               +  F   
Sbjct: 205 IVDVGGRLQFSTPKTRSSEATVPLTERAVQALLQVRLGQDLDRQGWGGAYHAHDLVFARE 264

Query: 260 DKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD- 317
           +   +     +  F A    AG+     H +R  +A++   AG     +       ++  
Sbjct: 265 NGAPLRPEYATRRFVALTKAAGLRWVRLHDLRHGAASLMLAAGVPMAIVSKVLRHSSIGI 324

Query: 318 QAETYTK-GADRIRLGIKNS 336
             +TY     D +R      
Sbjct: 325 TVDTYGHLSEDTVRTASDAM 344


>gi|15605600|ref|NP_220386.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis
           D/UW-3/CX]
 gi|255311708|ref|ZP_05354278.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis
           6276]
 gi|255318009|ref|ZP_05359255.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis
           6276s]
 gi|34222769|sp|O84872|XERD_CHLTR RecName: Full=Tyrosine recombinase xerD
 gi|3329338|gb|AAC68462.1| Integrase/recombinase [Chlamydia trachomatis D/UW-3/CX]
 gi|296436423|gb|ADH18597.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis
           G/9768]
 gi|296437354|gb|ADH19524.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis
           G/11222]
 gi|296438282|gb|ADH20443.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis
           G/11074]
 gi|297140783|gb|ADH97541.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis
           G/9301]
          Length = 300

 Score = 99.3 bits (246), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 32/224 (14%), Positives = 70/224 (31%), Gaps = 23/224 (10%)

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
              K + ++  + L +++V F +    + +   P   +E PK         + E++    
Sbjct: 65  HKAKESETTLARRLIALKVFFHFLKDAKMLDQQPF--IEHPKIWKRLPSILSTEEVNSLL 122

Query: 184 SFWS--------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
                         S+          +G+R S+ C   +  + ++   + T K      V
Sbjct: 123 DQPLNIPNLDTHIASRDAAILYTFYATGIRVSELCDLCIGDISDDFIRV-TGKGRKTRLV 181

Query: 236 ELPDGFMKLLAM-----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284
            +     + +                 +E  F++   +K++ +         A      +
Sbjct: 182 PISIKAKQAIDAYLSSFRDELQKKNPSEEHVFLSIRGKKLDRSCVWKRITFYAKLVTTKR 241

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
            S H +R   AT   +  A    +    G   +   E YT  A 
Sbjct: 242 ISPHSLRHAFATHLLNNHADLRIIQEMLGHSRISSTEIYTHVAS 285


>gi|253566956|ref|ZP_04844408.1| integrase [Bacteroides sp. 3_2_5]
 gi|251944519|gb|EES85008.1| integrase [Bacteroides sp. 3_2_5]
          Length = 392

 Score = 99.3 bits (246), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 55/272 (20%), Positives = 96/272 (35%), Gaps = 26/272 (9%)

Query: 84  WGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRSGVESRKHTPSSA--IQFLTSM 140
           + + A      +E  F        G   + ++T +     +E  + TP +    + L + 
Sbjct: 120 FKTYASKKNSRYEQAFLHFDRFVGGKCTFGEVTVELCNKFLEYLRSTPQAIHQKRKLHTN 179

Query: 141 RVLFKW---------AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
            +   W         A R   +  NPC  +ER +         + E++ +      E   
Sbjct: 180 TIASYWSAFLGTLHTAHRDRKIKENPCPYLERVQTIPSDKVGLSAEELARVAETPCEIPV 239

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQ---NNIFSIKT--QKTGTIITVELPDGFMKLLA 246
            + AF F   +GLR SD      + +Q   +    I T  QKT  II   + +  ++L+ 
Sbjct: 240 LKTAFLFSCLTGLRKSDVKTFSWEMIQPEADGTLYITTRMQKTKQIIYNPIGEEALQLID 299

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATA 304
                +E       K  M    F  W K     AG+ K  + HG R    ++  DAG  +
Sbjct: 300 G---SREGLVFPGFKDSMTQAPFKKWIK----AAGITKKLTFHGARHTFCSLQLDAGTDS 352

Query: 305 HELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
             +    G K +   + Y    +  +    N 
Sbjct: 353 RTVQELVGHKNLATTQRYLDSVNSRKKEAANR 384


>gi|89053521|ref|YP_508972.1| site-specific tyrosine recombinase XerC [Jannaschia sp. CCS1]
 gi|88863070|gb|ABD53947.1| phage integrase [Jannaschia sp. CCS1]
          Length = 307

 Score = 99.3 bits (246), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 43/251 (17%), Positives = 79/251 (31%), Gaps = 20/251 (7%)

Query: 100 DQIIRKSGDFDYRKITTKHIRSGVESRKHT---PSSAIQFLTSMRVLFKWAVRQEYVAIN 156
           D +    G    R + T+ +R+ + S++       S  + L++++  + W   ++     
Sbjct: 47  DHLGGSPGPAALRTLQTRDLRAWMSSQRARDVGARSLARRLSAVKAFYNWWAERDGFDAT 106

Query: 157 PCLSVERPKRKTEGIRPWTK----EDMQQFKSFWSEG---SQPRLAFEFLLYSGLRCSDS 209
             LS+  PK      RP T+    + +             ++       L   GLR S++
Sbjct: 107 AVLSMRAPKHTRRLPRPLTEVGAKDMIAGLADQDDRDWVQARDMAVVTLLYGCGLRISEA 166

Query: 210 CRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP-------IGKETFFINNDKQ 262
                  L        T K G    V +        A                F      
Sbjct: 167 LGLTADLLPLPGILRITGKGGKEREVPVLPAAQDACARYAQLCPHDLAPGTPLFRAIRGG 226

Query: 263 KMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
            +     +   +    + G+  +A  H +R   AT   DAG     +    G  ++   +
Sbjct: 227 ALGPRAVAKVMEKTRLQLGLPATATPHAMRHSFATHLLDAGGDLRAIQELLGHASLSTTQ 286

Query: 321 TYTKGADRIRL 331
            YT   D  RL
Sbjct: 287 AYT-AVDTARL 296


>gi|297572206|ref|YP_003697980.1| integrase family protein [Arcanobacterium haemolyticum DSM 20595]
 gi|296932553|gb|ADH93361.1| integrase family protein [Arcanobacterium haemolyticum DSM 20595]
          Length = 260

 Score = 99.3 bits (246), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 37/251 (14%), Positives = 74/251 (29%), Gaps = 5/251 (1%)

Query: 82  AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMR 141
               +L+  +        + +            T + I     S   +  +   + T ++
Sbjct: 1   MRAQALSDLTIHERIRVSNCLCEYVDATPVTITTDQIIE--WVSLLPSAVTKWTYFTHIK 58

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201
            LF W         NP L ++ P+R     RP + E ++   +      + R        
Sbjct: 59  ALFTWLEITRRRTDNPLLGLKAPRRPKYYPRPISLEVIEHVLNQ-RLYRKTRCMILLAFN 117

Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKTQ-KTGTIITVELPDGFMKLLAMTPIGKETFFINND 260
            GLR  + C+   Q        +  + K G    + +           P     F   N 
Sbjct: 118 CGLRVGEICKVRGQDYDRQAGLLTVEGKGGKRSIIPVNSALQPFFNTMPAHGWWFPCRNG 177

Query: 261 KQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
               + +      +       V+  +H +R   AT    A      +      +++    
Sbjct: 178 GHVRSRSVGDTIVRTFRRYE-VHMVSHQLRHTFATELLAADVDLRIVQLLMRHESIQTTA 236

Query: 321 TYTKGADRIRL 331
            YT+ A   +L
Sbjct: 237 LYTRVARAQQL 247


>gi|254303856|ref|ZP_04971214.1| site-specific recombinase [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148324048|gb|EDK89298.1| site-specific recombinase [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 328

 Score = 99.3 bits (246), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 42/295 (14%), Positives = 95/295 (32%), Gaps = 44/295 (14%)

Query: 88  AVNSRISFESYFDQIIRKS--GDFDY---------RKITTKHIRSGV----ESRKHTPSS 132
           +  +   +  +    +     G+ D+         + I  + + + +    E RK   +S
Sbjct: 33  SEKTVKDYMFHLKDFLHFVYEGENDFSISEVIPLMQDIEKEDVEAYIVHLFEDRKLKKTS 92

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW--TKEDMQQFKSFWSEGS 190
               L++++ L+K          NP   ++  K           + +D+++    +   S
Sbjct: 93  VNTILSALKSLYKELESNGL--KNPVKYIKLFKVNRNIENVLKVSIDDIRKIIGLYKIDS 150

Query: 191 QPR----LAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDGFM 242
           + +         L Y+G+R  +      +H         F +   K+G  +   +    +
Sbjct: 151 EKKYRNITILYTLFYTGMRSKELLTLQFKHYLKREDEYFFKLVETKSGKDVYKPIHKSLV 210

Query: 243 K-------------LLAMTPIGKETFFINN--DKQKMNATQFSIWFKAKATKAGVNKSAH 287
           K              L +  + +   F  +  D   ++    +   +      G + S H
Sbjct: 211 KKLEEYKKYLMSMYSLDIKDLDEHYIFSTSILDNSPLSYRSLNAIIQDMGKLIGKDISPH 270

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
            +R   AT  + +GA   E+    G       E Y     R  L  K   ++  +
Sbjct: 271 NIRHAIATELSLSGADILEIRDFLGHSDTKVTEVYINA--RSILEKKVLEKLPEI 323


>gi|331086445|ref|ZP_08335525.1| hypothetical protein HMPREF0987_01828 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330406211|gb|EGG85734.1| hypothetical protein HMPREF0987_01828 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 353

 Score = 99.3 bits (246), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 51/335 (15%), Positives = 101/335 (30%), Gaps = 44/335 (13%)

Query: 16  TRHGKII----YY-----FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
           TR GK      YY      R    +R          +   +                 + 
Sbjct: 4   TRDGKTWRSQFYYEDWQGIRHKKNKRGFKTKAEAEEWERNFRQ------------QQRKD 51

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE- 124
                +  +  Y        L  ++  +    FD ++          +I T  IR+    
Sbjct: 52  LDINFENFVEIYFADVE-NRLRESTIKNKRYVFDLKVTPYFKKKKMCEIKTSDIRAWQNE 110

Query: 125 --SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP-KRKTEGIRPWTKEDMQQ 181
              + + P+        +  LF +AVR   +  NPC       K K + +  WTK++ +Q
Sbjct: 111 LIKQGYAPTYLKSINNQLAALFNYAVRYYDLKDNPCRKAGSIGKSKADDMEFWTKQEFKQ 170

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---------------NNIFSIKT 226
           F     +  + R+AF  L ++G+R  +      + +                +    I  
Sbjct: 171 FLPSMDKKPEARMAFMLLYWTGMRIGELLALTYEDIDLEKRIISISKSYQRLDGKDVITP 230

Query: 227 QKT-GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284
            KT  +   + +P    + L            N    +   +           + GV + 
Sbjct: 231 PKTPKSNRKITIPPFLAEELKEYCSHLYGIMSNERMFRFTKSYMEHEIVRGIKETGVKRI 290

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
             H +R   A++  + G     +    G + ++  
Sbjct: 291 RIHDLRHSHASLLVELGFQPLAIAERLGHEKIETT 325


>gi|225377375|ref|ZP_03754596.1| hypothetical protein ROSEINA2194_03023 [Roseburia inulinivorans DSM
           16841]
 gi|225210776|gb|EEG93130.1| hypothetical protein ROSEINA2194_03023 [Roseburia inulinivorans DSM
           16841]
          Length = 404

 Score = 99.3 bits (246), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 93/278 (33%), Gaps = 24/278 (8%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSGVESRK 127
           L  L SE+ K+      + ++         +        G  D++ +T   I + + S  
Sbjct: 112 LHDLFSEFLKAEEHRHFSESTMKQLRGRLMRFHDYLYDIGIRDFKSVTGSIINTYILSLA 171

Query: 128 HTPSSAIQ-FLTSMRVLFKWAVRQEYVAINPCLSVERPK--RKTEGIRPWTKEDMQQFKS 184
              ++ +   L  +R L  +     ++       +   K  R+ +    +T  ++++  +
Sbjct: 172 RYSTTYVSESLREIRRLLTFGYENGFIDTPLSDFIPHVKNIRQQKIPSTFTDTEIEKILN 231

Query: 185 FW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELP 238
                   G +    F      G+R SD       ++   + + S   QKTG  +++ LP
Sbjct: 232 SVDRSNPIGKRNYAIFLIAARLGIRSSDIRTLTFSNINWDDKLISFCQQKTGHALSLPLP 291

Query: 239 DGFM-KLLAMTPIGKE-----TFFINNDKQKMNATQFSIWFKAKATKAGVNKSA------ 286
           D     ++     G+        F+++                +   AG+N  A      
Sbjct: 292 DDVGWAIIDYLKNGRPETNVKNIFVSHMYPYGELHSLGNVIPRQMRTAGINTPANKRTGM 351

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           H  R   AT   +   +   +  T G   +   E Y +
Sbjct: 352 HAFRHGLATRMLENDVSLPVISQTLGHADISSTEVYLR 389


>gi|213019194|ref|ZP_03335001.1| site-specific recombinase, phage integrase family [Wolbachia
           endosymbiont of Culex quinquefasciatus JHB]
 gi|212995303|gb|EEB55944.1| site-specific recombinase, phage integrase family [Wolbachia
           endosymbiont of Culex quinquefasciatus JHB]
          Length = 278

 Score = 99.3 bits (246), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 39/256 (15%), Positives = 80/256 (31%), Gaps = 23/256 (8%)

Query: 90  NSRISFESYFD-QIIRKSGDFDYRKITTKHIRSG---VESRKHTPSSAIQFLTSMRVLFK 145
                  S+ +  I  +       K++   +RS      +R     S  + L+ +R  FK
Sbjct: 2   RDLKDLISFLNTHIGEEVNVGSLEKLSIPELRSWFTSRYARGVNARSNTRALSVIRNFFK 61

Query: 146 WAVRQEYVAINPCL-SVERPKRKTEGIRPWTKEDMQQFKSFWSEGS--------QPRLAF 196
           + ++  Y   N  + S+ RP ++    +  +  +++                  +     
Sbjct: 62  Y-IKNNYEINNEAVFSLSRPIQRRTLPKALSISNIETLLKEMKLPDLGEPWVVKREIAIV 120

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF- 255
             L  +GLR +++    V  + N    I T K      V +     K +         F 
Sbjct: 121 VLLYGTGLRITEALNLKVSDISNESL-IVTGKGDKQRQVFILPVVKKCIQKYIKACPHFD 179

Query: 256 -----FINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELM 308
                F+    +K+  T  +   +       +    S H  R   AT           + 
Sbjct: 180 EAGHLFVGVRGKKLGRTYVANRLQKIRRFLNLPEILSPHAFRHSFATHLLQEDIDIRSIQ 239

Query: 309 ATYGWKTVDQAETYTK 324
              G  +++  + YT 
Sbjct: 240 QLLGHSSLETTQVYTH 255


>gi|289525911|emb|CBJ15393.1| integrase/recombinase [Chlamydia trachomatis Sweden2]
 gi|296435499|gb|ADH17677.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis
           E/150]
          Length = 300

 Score = 99.0 bits (245), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 31/224 (13%), Positives = 71/224 (31%), Gaps = 23/224 (10%)

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
              K + ++  + L +++V F +    + +   P   +E PK         + E++    
Sbjct: 65  HKAKESETTLARRLIALKVFFHFLKDAKMLDQQPF--IEHPKIWKRLPSILSTEEVNSLL 122

Query: 184 SFWS--------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
                         S+          +G+R S+ C   +  + ++   +  +   T + V
Sbjct: 123 DQPLNIPNLDTHIASRDAAILYTFYATGIRVSELCDLCIGDISDDFIRVTGKGRKTRL-V 181

Query: 236 ELPDGFMKLLAM-----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284
            +     + +                 +E  F++   +K++ +         A      +
Sbjct: 182 PISIKAKQAIDAYLSSFRDELQKKNPSEEHVFLSIRGKKLDRSCIWKRITFYAKLVTTKR 241

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
            S H +R   AT   +  A    +    G   +   E YT  A 
Sbjct: 242 ISPHSLRHAFATHLLNNHADLRIIQEMLGHSRISSTEIYTHVAS 285


>gi|92115230|ref|YP_575158.1| phage integrase [Chromohalobacter salexigens DSM 3043]
 gi|123083908|sp|Q1QSU9|XERC_CHRSD RecName: Full=Tyrosine recombinase xerC
 gi|91798320|gb|ABE60459.1| phage integrase [Chromohalobacter salexigens DSM 3043]
          Length = 298

 Score = 99.0 bits (245), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 36/271 (13%), Positives = 84/271 (30%), Gaps = 20/271 (7%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGVES---R 126
             +  +  S   G  +  +  ++        + +  SG  D+  +    +R  + +   R
Sbjct: 3   AAVERFLHSLS-GHASPATLDAYRRDLTALARFLEASGIDDWAALDVAQVRRFMGAERTR 61

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
              P S  +   ++       VR   +  NP    + P++     RP   + + +F    
Sbjct: 62  GLAPRSLARRRAALSRFADHLVRSGILDHNPVALTQTPRQPRHLPRPVDVDQLARFLDTP 121

Query: 187 SEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-------KTQKTGTIITV 235
            +G+    + +   E     GLR ++     V  L      +       +    G     
Sbjct: 122 HDGTPLAVRDQAMLELFYSCGLRLAELTALDVTDLDARRLRVVGKGNKPRQMPIGRRAQA 181

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293
            L D +     +    +   F+     ++            A + G+  +   H +R   
Sbjct: 182 ALADWYRLRGQLAGHDEPALFVGQRGARLGHRAVQKRLAQLARERGLAEHLHPHRLRHSF 241

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324
           A+   ++      +    G   +   + YT+
Sbjct: 242 ASHLLESSQDLRAVQELLGHANLSTTQVYTR 272


>gi|294141273|ref|YP_003557251.1| site-specific recombinase, phage integrase family [Shewanella
           violacea DSS12]
 gi|294141423|ref|YP_003557401.1| site-specific recombinase, phage integrase family [Shewanella
           violacea DSS12]
 gi|293327742|dbj|BAJ02473.1| site-specific recombinase, phage integrase family [Shewanella
           violacea DSS12]
 gi|293327892|dbj|BAJ02623.1| site-specific recombinase, phage integrase family [Shewanella
           violacea DSS12]
          Length = 296

 Score = 99.0 bits (245), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 41/284 (14%), Positives = 93/284 (32%), Gaps = 19/284 (6%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KH 128
             +L  ++  +         +  ++     +I     D     +TT  ++    S    H
Sbjct: 9   FDFLYEQHLTNLTLQGKRPATIDAYSRAVRRIAAFF-DCCPDNLTTDDLKRYFASLIDSH 67

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           + S+       ++  +++ +   +  +N    + +P +        T  ++    S   +
Sbjct: 68  SWSTVKLDRNGLQFFYRYVLNHSWEWLN----IVKPPQVQRLPDILTPCEVAIVISLTRQ 123

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDG-FMKLL 245
             + ++ F  L   GLR  ++    V  + + I    I+  K G    V LP      L 
Sbjct: 124 -LRYQVCFLTLYSMGLRLGEAISLRVGDIDSQIMQVHIRNAKGGKDRLVPLPKRTLQALR 182

Query: 246 AMTPIGK--ETFFINNDKQKMN---ATQFSIWFKAKATKAGVNKS--AHGVRKFSATISA 298
                       F   D Q  +           K    +  ++KS   H +R   AT   
Sbjct: 183 YYWKTHHHPRYLFPGKDSQPDSLIDKGGIQKALKRVIGECNIHKSISPHNLRHSYATHLL 242

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLG-IKNSRRISS 341
           + G     + +  G  +++    YT+     R   ++   +++ 
Sbjct: 243 EQGLDLRSVQSLLGHNSLNTTARYTRLTQITRKNTVEAINQLAD 286


>gi|177654275|ref|ZP_02936204.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0174]
 gi|172080765|gb|EDT65846.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0174]
          Length = 376

 Score = 99.0 bits (245), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 43/293 (14%), Positives = 95/293 (32%), Gaps = 28/293 (9%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHT 129
              L+  + +     S   ++   ++     +++ + G+     I    + +  +     
Sbjct: 63  FSQLVEIWTQEKE-SSCRPSTLYQYKRILRSRVMPEFGEKRLSDIKPLSVHNFHQKLLKE 121

Query: 130 PSSAIQFLTS---MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             +     +    ++ +    V  E +  NP    +RPK K +    WT E+  +F  + 
Sbjct: 122 GLTTKYISSVDVMLKQILDKGVELEMINSNPAKKAKRPKVKKKAQASWTVEEAMKFMEYA 181

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT------------ 234
                  +AF   L++G+R  +      + +      I  Q+T T++             
Sbjct: 182 KIQGSYYIAFVLALHTGMRIGEVLALQWKDINFESKVIHVQRTLTLVDGKYELGETKTEA 241

Query: 235 ----VELPDGFMKLLAMTPIGK-----ETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284
               + +    M+        K     +      +K+ ++        KA      V   
Sbjct: 242 SNRMIPMTQELMREPLEYQSHKKDNSFDLLICTRNKKIVHPYTIRYQMKALCEAIDVPYI 301

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNS 336
             H +R+   TI  D+GA A  +    G   V      YT   +  ++ +   
Sbjct: 302 RFHDIRRTFTTILIDSGANAKVVSKLLGHTNVSTTLNIYTDVYEERQIEVTEM 354


>gi|154490810|ref|ZP_02030751.1| hypothetical protein PARMER_00727 [Parabacteroides merdae ATCC
           43184]
 gi|154088558|gb|EDN87602.1| hypothetical protein PARMER_00727 [Parabacteroides merdae ATCC
           43184]
          Length = 333

 Score = 99.0 bits (245), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 82/228 (35%), Gaps = 14/228 (6%)

Query: 110 DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
            +R       +     +  + +SA  + +  R + K A R +Y+  NP   +E+ + +  
Sbjct: 103 RFRDYLLHARQLKHTDKMVSRNSAASYFSLFRGVLKLAYRDKYLRENPNDFLEKIESRDI 162

Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-----QNNIFSI 224
                T+++++   S   +    R A  F   +GLR SD      ++L       +   +
Sbjct: 163 HKEFLTQDELKTLASTPCDIPVLRNASLFSCLTGLRISDILNLKWENLCTAPDLGHCIRL 222

Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284
           +TQKT T   + +      L      GK        ++ M       W K     AG+ K
Sbjct: 223 RTQKTQTEALLPISYEAYALCGEPGTGK---VFKELRRCMTGYPLKAWIKK----AGIQK 275

Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
             + H  R   AT+   AG     +      K V   + Y +     +
Sbjct: 276 HITFHCFRHTYATLQIAAGTDIFTVSKMLTHKNVATTQIYAELVSEKK 323


>gi|54308529|ref|YP_129549.1| putative integrase [Photobacterium profundum SS9]
 gi|46912958|emb|CAG19747.1| putative integrase [Photobacterium profundum SS9]
          Length = 295

 Score = 99.0 bits (245), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 40/271 (14%), Positives = 86/271 (31%), Gaps = 21/271 (7%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFK 145
              +  ++     +I +         +TT  ++    S  + H+ S+       ++  ++
Sbjct: 26  RPATIDAYSRAVRRISQFFDRCP-DAMTTADLKQYFASLIQTHSWSTVKLDRNGLQFFYR 84

Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS-GL 204
             + +E+  ++    + +P +  +     T + +    S      +    F   LY+ GL
Sbjct: 85  HTLEKEWQWLD----IVKPPQSKKLPDIITAQQVALLISMTK--QKRYQIFFLTLYTMGL 138

Query: 205 RCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFMKLLAM--TPIGKETFFINND 260
           R  +     V  +  +     I+  K G    V +P   +  L                 
Sbjct: 139 RLGEGLSLTVHDIDQHTMQVHIRDGKGGKDRLVPVPQRTLNALRAHWLTHRHPRLIFPGK 198

Query: 261 K----QKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWK 314
                  M+        K      G+NK  S H +R   AT   + G     L    G  
Sbjct: 199 GCNTDNPMDRGGVQKAMKLVLKDCGINKPISPHSLRHCFATHLLEQGLDLRSLQILLGHA 258

Query: 315 TVDQAETYTKGAD-RIRLGIKNSRRISSVVD 344
           +++    YT+    + R       R++  + 
Sbjct: 259 SLNTTARYTRMTQIKQRDAALAINRLADALT 289


>gi|41179218|ref|NP_958556.1| putative integrase [Lactobacillus prophage Lj965]
 gi|42518375|ref|NP_964305.1| Lj965 prophage integrase [Lactobacillus johnsonii NCC 533]
 gi|38731488|gb|AAR27434.1| putative integrase [Lactobacillus prophage Lj965]
 gi|41582660|gb|AAS08271.1| Lj965 prophage integrase [Lactobacillus johnsonii NCC 533]
          Length = 391

 Score = 99.0 bits (245), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 60/382 (15%), Positives = 131/382 (34%), Gaps = 58/382 (15%)

Query: 14  ERTRHGKIIYYF-----RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
            + + GK  Y F     +  +G R+++      T+  A   A+     + +  N  ++K 
Sbjct: 12  YKLKSGKKRYEFVISLGQNSNGDRVQVHRRGFKTYAEA--EAVFNKLSQTKPDNFVKQKQ 69

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRK 127
             +  L   + ++     +  ++    +  FD  +I   G+    KIT   ++   + + 
Sbjct: 70  IKVSELRDLWFENYK-TQVKESTANKNKQVFDNHVIPDFGNQYVDKITVAELQKWADRKA 128

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-----PWTKEDMQQF 182
                    +     LF++ +R  YV+ NP   +  PK+ +   R      +T+E++ QF
Sbjct: 129 KQIVKYRDAINEFNALFEYGIRLNYVSENPLKRIIIPKKTSRPRRDTEHNVYTREELNQF 188

Query: 183 KSFWSE-GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------------ 229
                E G      F+ L  +GLR S++     Q +     ++   KT            
Sbjct: 189 LEVAKEYGLVQYTYFKLLSATGLRKSEALALTWQDIDLKAGTLSINKTLAYGLDNKTIIQ 248

Query: 230 -----GTIITVELPDGFMKLL----AMTPIGKETFFINNDKQKMNATQFSIWFK------ 274
                 +   + + D   ++L        I     F       +  ++   W K      
Sbjct: 249 PPKSPKSKRILPISDSLKEVLIDYKQKQKIISNKLFHTIKGTYLKMSKPDQWLKSIYAKD 308

Query: 275 -----AKATKAGVNK--------SAHGVRKFSATIS-ADAGATAHELMATYGWKTVDQA- 319
                  A    + +        + HG R   AT+  A+       +    G + +    
Sbjct: 309 HEEKVKYAKTHNLKEPQPDLRHITVHGFRHTFATLLIAETNVKPKTVQMLLGHENIQMTL 368

Query: 320 ETYTKGADRIRL-GIKNSRRIS 340
           + YT   ++ +   +   ++++
Sbjct: 369 DIYTHVNNKNKEDAVNALKQLN 390


>gi|332096520|gb|EGJ01516.1| integrase [Shigella dysenteriae 155-74]
          Length = 348

 Score = 99.0 bits (245), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 60/341 (17%), Positives = 110/341 (32%), Gaps = 23/341 (6%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63
           +  LPP +     R G   Y +R     R       +   +   ++A       +     
Sbjct: 10  TRDLPPNLY---NRGG--YYSYRDPRSGREFGIGRDKRIAVNEAIAANMELLSTQHISLL 64

Query: 64  PRKKPTT---LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
            R K  +      LI  +R       L+ N+          I    G    + I  + + 
Sbjct: 65  DRIKGNSVTLFYELILNFRNEIERRQLSTNTMKRHNQRLKIISEYFGGVPVKNIGIREVY 124

Query: 121 SGVESRK--HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
           S +E R      + A Q+   +  +FK A+       +P  +    + + +  R    E 
Sbjct: 125 SFLEIRAVGSKFAIANQYRALLSDIFKTAIASGLAEEDPASATRPFRTEVKRSRLLIDEY 184

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
           +   K    +     L  +  L +G R  D      + +++    ++ QKTG  I + LP
Sbjct: 185 LLIRKIADVQNEWFGLCMDLALVTGQREGDLAAMRWEDIRDGRLYVEQQKTGAKIRISLP 244

Query: 239 DGFMKLLAMTPIGKETFFINNDK-----QKMNATQFSIWFKAKATKAGVNK-----SAHG 288
               +L        +     N K         A   +  F+     +G+         H 
Sbjct: 245 TTISRLNLTLADVLDNLKKINGKNEKLLGGKTARTIAAQFRIARDTSGLKWEGDPPPFHE 304

Query: 289 VRKFSAT-ISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           +R  S    SA+ G+   +  A  G ++    + Y  G  R
Sbjct: 305 IRSLSGRLHSAEKGSDFTQ--ALLGHRSSSMTDKYRDGRGR 343


>gi|262067786|ref|ZP_06027398.1| conserved domain protein [Fusobacterium periodonticum ATCC 33693]
 gi|291378509|gb|EFE86027.1| conserved domain protein [Fusobacterium periodonticum ATCC 33693]
          Length = 362

 Score = 99.0 bits (245), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 44/290 (15%), Positives = 105/290 (36%), Gaps = 23/290 (7%)

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK 113
             P        +K+    + L   + K+     L   +  +  ++F+   +K    D + 
Sbjct: 68  EKPLIAENKKDKKEKILFENLYDIWLKNKKPSKL---TLRNLTTHFNN-SKKLHKLDIKT 123

Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAIN-------PCLSVERPKR 166
           I    +++ +     +  +     +  + +F +A+  ++   +       P    E+ K+
Sbjct: 124 INGIILQNILNDANLSKGTLRNLKSFWKQIFDFAILNDFCQKDYVTFLKLPTE--EKGKK 181

Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQPRL----AFEFLLYSGLRCSDSCRAGVQHL--QNN 220
            ++  R +T ED+Q+  +      + R           Y+GLR ++     ++++  +  
Sbjct: 182 TSDRNRIFTTEDLQKLWNNLYNDEKDRFKIIDVILVHCYTGLRPNELLNIKIENVNLKEK 241

Query: 221 IFSIKTQKTGTIIT-VELPDGFMKLLA-MTPIGKETFFINNDKQKMNATQFSIWFKAKAT 278
              I   KT + I  + +P    +L+       KE  F   D  K+    +   F+    
Sbjct: 242 YIDITKSKTKSGIRRLPIPSKIFELIKKRYDNEKEFLFTRYDGAKLLYDTYDYQFREVMI 301

Query: 279 KAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGA 326
              ++  + H  R   AT+ ++A      ++   G  +    +E Y    
Sbjct: 302 DLEIDYHTTHDCRHTFATLLSNAEIDKEIIIKLTGHSSYKITSEKYIHKV 351


>gi|209418091|ref|YP_002274120.1| site-specific recombinase [Mycobacterium liflandii 128FXT]
 gi|169409223|gb|ACA57629.1| site-specific recombinase [Mycobacterium liflandii 128FXT]
          Length = 345

 Score = 99.0 bits (245), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 45/314 (14%), Positives = 98/314 (31%), Gaps = 57/314 (18%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQII-------RKSGDFDYRKITTKHIRSGVESRKHT 129
           E+         + ++  ++   F+ +                  +  + +R+       T
Sbjct: 21  EFLADRAIRKPSPHTTKAYRQDFEAVALLLAGGADAISTLPTNALNKESLRAAFAVYAET 80

Query: 130 --PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ------- 180
              +S  +  ++   L  +      +  NP  ++ RPK      + +T + +        
Sbjct: 81  HSAASIRRCWSTWNTLCTFLYTANLLDANPMPAIGRPKVPKALPKSYTADAVNNLIAAID 140

Query: 181 -----QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---NNIFSIKTQKTGTI 232
                  +S W E  + R      L +GLR  +  RA +  ++   +      + K    
Sbjct: 141 TDDGSARRSNWPE--RDRAIIFTALLTGLRADELIRANIGAIRCNADGGVLHVSGKGNKD 198

Query: 233 ITVELPDGFMKLLAM-----------------------TPIGKETFFINNDKQKMNATQF 269
             +      +++L                                 F+ +D +++     
Sbjct: 199 RRIPCDTKLIEMLQRYLQTREDRIPHLRKRSASPDVMGRFSPTAPLFVGSDGERITRGTL 258

Query: 270 SIWFKAKATKAGVNKS------AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
                    KAG+N         HG+R   AT  A+A  + + LM   G +++  ++ Y 
Sbjct: 259 QYRILRGFKKAGINNDRAAGALVHGLRHTFATELANANVSVYALMKLLGHESMVTSQRYV 318

Query: 324 --KGADRIRLGIKN 335
               AD  R   +N
Sbjct: 319 DGAAADTRRAAERN 332


>gi|158341027|ref|YP_001522194.1| phage integrase [Acaryochloris marina MBIC11017]
 gi|158311268|gb|ABW32880.1| phage integrase [Acaryochloris marina MBIC11017]
          Length = 351

 Score = 99.0 bits (245), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 52/296 (17%), Positives = 103/296 (34%), Gaps = 32/296 (10%)

Query: 56  PKREYINSPRKKPTTLKWL-ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI 114
             R     P+  P  L+   + E+ +S     ++ N+R ++E    Q +    D  + +I
Sbjct: 21  AARSRTQPPKSTPADLRRTRVEEFMRS---REISSNTRKAYERDLKQFMD-WTDKGWHEI 76

Query: 115 TTKHIRSGVESRKHTP---------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165
           + + +       K  P         ++  + L +++  FKW   ++Y+  +P L +E+ K
Sbjct: 77  SARDLDRYKNHLKVEPNQRGQLRKNATINRNLAALQSFFKWLTVRDYITKDPTLLLEKLK 136

Query: 166 RKTEGIRPWTKEDMQQ-FKSFWSEGSQPRLAFEF--LLYSGLRCSDSCRAGVQHLQNNIF 222
                 + ++++++   +++    G           L+  GLR S+  R  V        
Sbjct: 137 ADPVLPQEFSQDEVDNLYQAICDRGFHTFRDRALLHLIDHGLRASEIHRLNVGDYDGQRI 196

Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTP----------IGKETFFI----NNDKQKMNATQ 268
            I+  K  ++ TV L     K +                    F+    N+  Q++    
Sbjct: 197 IIRVAKADSVGTVPLLKKARKAIDQYKQWREQQGDVLGNDSPLFVSHSNNSKGQRLQYWG 256

Query: 269 FSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
               FKA A  A V N   H  R   AT        +          +      Y+
Sbjct: 257 IYKIFKAIADIAEVENAHPHRGRHTLATRLVMKDMDSVLARRITRHTSEQSFVRYS 312


>gi|159905040|ref|YP_001548702.1| integrase family protein [Methanococcus maripaludis C6]
 gi|159886533|gb|ABX01470.1| integrase family protein [Methanococcus maripaludis C6]
          Length = 282

 Score = 99.0 bits (245), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 37/254 (14%), Positives = 87/254 (34%), Gaps = 15/254 (5%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLF 144
             L+ +++ +++       +K  +  +R +    +     +   T +S +  L  +   +
Sbjct: 14  AGLSKSTKNAYKYGLRTF-QKYVNKRWRDVMVNDVILFYTNHNATKNSKMGLLGIVNRFY 72

Query: 145 KWAVRQEYVAINPCLS-VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203
            WA+ + Y+  NP    ++  +R+ +     T    +   S   + S   +   F+L +G
Sbjct: 73  DWAIEENYLLENPVKKFLKTLRREKKERNYLTTSQAEYLLSNMKKYSY-YVMTLFILRTG 131

Query: 204 LRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFM-------KLLAMTPIGKET 254
           +R S+     +Q +   +    I+  K      V   +          K         + 
Sbjct: 132 VRISEIRNIKLQDIDFESKCIFIRAGKGKKDRYVFFDNNLEFHIKEYIKERCYRDPDCDN 191

Query: 255 FFINNDKQKMNATQ---FSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATY 311
            FIN   + ++      ++ +    A    +  + H +R   AT   + G     L    
Sbjct: 192 LFINRFGRPVSRRSIIYYTEYLNEVAPNIHIRITPHILRHTFATSMLERGIDLKSLSLIL 251

Query: 312 GWKTVDQAETYTKG 325
           G + +     Y   
Sbjct: 252 GHENISTTSIYLHK 265


>gi|255014532|ref|ZP_05286658.1| integrase [Bacteroides sp. 2_1_7]
 gi|293370765|ref|ZP_06617311.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|292634125|gb|EFF52668.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
          Length = 401

 Score = 99.0 bits (245), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 37/230 (16%), Positives = 80/230 (34%), Gaps = 13/230 (5%)

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
             + ++  + ++A  +    + +   A R+  +  N    ++         +  + E+++
Sbjct: 152 KVMVNKPISRNTASAYWNIFKQVLTKAYRERRLVDNIASLLDNIPCTIPVKQSLSLEEVR 211

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-----QNNIFSIKTQKTGTIITV 235
           +  +        R A  F   SGLR SD      +++       +    K  KT     V
Sbjct: 212 KLYNSECSVPVVRKAAIFSCLSGLRISDILNLKWENIQTYADGGHYLDFKCVKTQRQTQV 271

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFS 293
            + D   +L+      K  +  +   + M       W K    + G+ K  + H  R   
Sbjct: 272 PIGDDAYELIQPQTTDK--YIFSGFNRTMTYRVMQDWIK----ECGIKKHITFHCFRHTY 325

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343
           A++  + G   + +      K V   + Y   AD       +  R+++V 
Sbjct: 326 ASLQLELGTDIYTVQHLLNHKNVSTTQIYASHADPKTREAADRIRLTNVK 375


>gi|310818587|ref|YP_003950945.1| phage integrase family protein [Stigmatella aurantiaca DW4/3-1]
 gi|309391659|gb|ADO69118.1| Phage integrase family protein [Stigmatella aurantiaca DW4/3-1]
          Length = 395

 Score = 99.0 bits (245), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 57/380 (15%), Positives = 102/380 (26%), Gaps = 64/380 (16%)

Query: 21  IIYYFRKGHGRRIRLPYPHEST-FIPAY-----MSALTGSTPKREYINSPRKKPTTLKWL 74
           + Y    G   RIR   P  +      Y      + LTG+  K            TL   
Sbjct: 23  VKYQHPSGRVERIRKASPINTRRGAEEYERQIRHALLTGTFGKENGAGRVL----TLGEF 78

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           +  +   +   +   +S ++ +   D  +I   G+     I    I     + +  PS A
Sbjct: 79  VPRFLTYSENNN-KHSSVVTKQQILDDHLIPAFGNMPLDAIGPAEIEDFKAAMRKKPSGA 137

Query: 134 -----------------------------IQFLTSMRVLFKWAVRQEYVAINPCLSVERP 164
                                           LT +  L   A  Q  +   P   V+  
Sbjct: 138 RARKETPTRAALLKRKGSGAVKLLSLKSINNVLTVLHKLLALAQEQGVLQHVP--RVKLF 195

Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
           K         + E+ ++  +      + R      L +GLR  +        L      +
Sbjct: 196 KTDKPAFDFLSFEEAERMSNAAEP--EWRTLILVALKTGLRLGELIGLQWADLDLQRGKL 253

Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIG------------KETFFINNDKQKMNATQFSIW 272
             ++T     V LP G  +     P                  F   D + + A      
Sbjct: 254 NVRRTIWRDVVGLPKGGRERTVDLPTSTVEALKAHRHLCGPYVFCQTDGRPLTAGMTKHP 313

Query: 273 FKAKATKAGVNK-----SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
                 +AGV++       H +R    +  A  G     +    G  T++    Y   + 
Sbjct: 314 LLRALRRAGVSRPEGSIGWHDLRHTYGSHLAMRGVALKVIQELMGHATIEMTMRYAHLSP 373

Query: 328 RIRLGIKNSRRISSVVDSDD 347
             R      + +   +    
Sbjct: 374 EAR--ESAVQELDRPIPQPR 391


>gi|88803782|ref|ZP_01119305.1| tyrosine type site-specific recombinase [Polaribacter irgensii
           23-P]
 gi|88780310|gb|EAR11492.1| tyrosine type site-specific recombinase [Polaribacter irgensii
           23-P]
          Length = 374

 Score = 99.0 bits (245), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 45/261 (17%), Positives = 90/261 (34%), Gaps = 19/261 (7%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
           KWL  + R S +     V    ++  Y   +++K+  F  + +   +  S     K    
Sbjct: 108 KWLF-QKRLSKNTVHTYVTVTATYIRY--ALLKKADLFSMKTVAAFNYDSIFVPNKSISY 164

Query: 132 SAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
              QF+  ++  F +     E +       +ERP+++ +     +  +++   S  +   
Sbjct: 165 Q-NQFIGGIQKFFAYKGYAYEEIP------IERPRKEKKLPIILSGAEIKAIFSTIT-NL 216

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI--KTQKTGTIITVELPDGFMKLLA-- 246
           + +     L  +GLR  ++    V  +      I  +  K        L   F+K+L   
Sbjct: 217 KHKALLSLLYSAGLRIGEAITLEVTDIDCQRMLIYGRQAKGKKDRYTLLSPVFLKILRDY 276

Query: 247 -MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGAT 303
            +    K + F   +    +        K    KAG+ K  + H +R   AT   + G  
Sbjct: 277 YVAYRPKNSLFEGANGSTYSDASAQKVLKNALFKAGIRKKATLHSLRHSFATHLLEKGTD 336

Query: 304 AHELMATYGWKTVDQAETYTK 324
              +    G  +      YT 
Sbjct: 337 IRYIQELLGHSSPKTTMIYTH 357


>gi|306519780|ref|ZP_07406127.1| putative tyrosine recombinase [Clostridium difficile QCD-32g58]
          Length = 290

 Score = 99.0 bits (245), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 44/267 (16%), Positives = 101/267 (37%), Gaps = 21/267 (7%)

Query: 85  GSLAVNSRISF----ESYFDQIIRKSGDF-DYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
             L+ N+  S+    + Y + I +KS    D  +         +E    + ++  + ++S
Sbjct: 15  KKLSENTVASYFMDIKKYMEYINQKSIKLVDIVENDIISYLIKLEKDNVSIATIARMISS 74

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLA 195
           ++    +         NP   +++PK K E I   T+E++++  +F    +    + +  
Sbjct: 75  IKSFHDYLFLNHICTNNPAKDIKKPKIKKENINILTEEEIERLLNFPKLTTPKLIRDKAI 134

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ---KTGTIIT------VELPDGFMKLLA 246
           FE L  +G++ S+     ++ +  +I  I      K   +I       + L     +   
Sbjct: 135 FEVLYGTGIKVSELVEMNIEDIDLDIDYIYCNSCCKNQRVIPLCDITKLYLEKYLKEARP 194

Query: 247 MTPIGKE-TFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHG--VRKFSATISADAGAT 303
              +  E + F+++  Q+          K  +  A ++K+ +   +R   A    + GA 
Sbjct: 195 KMAVEGEKSLFVSSLGQRFTRQGLWKVIKKYSNLANIDKNINPTMLRHSFAIHLLNEGAN 254

Query: 304 AHELMATYGWKTVDQAETYTKGADRIR 330
              +    G   +   + Y    D+ R
Sbjct: 255 IAVVSKILGNVNLSSLQVYLNHIDKKR 281


>gi|121602777|ref|YP_989194.1| putative integrase [Bartonella bacilliformis KC583]
 gi|120614954|gb|ABM45555.1| putative integrase [Bartonella bacilliformis KC583]
          Length = 95

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 35/93 (37%), Positives = 49/93 (52%)

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISA 298
                 LA  PIG ETF  +  ++  +    S  F     +AG+ KSAHG+RK +AT +A
Sbjct: 2   PKLAATLATGPIGDETFICSKSEKNSSKKALSTCFVKPCNQAGIKKSAHGLRKLAATRAA 61

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           ++GAT  ++ A +GW     A  Y K ADR  L
Sbjct: 62  NSGATVSQMRALFGWTEDSMASLYPKRADRKNL 94


>gi|225567989|ref|ZP_03777014.1| hypothetical protein CLOHYLEM_04062 [Clostridium hylemonae DSM
           15053]
 gi|225163277|gb|EEG75896.1| hypothetical protein CLOHYLEM_04062 [Clostridium hylemonae DSM
           15053]
          Length = 364

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 53/340 (15%), Positives = 106/340 (31%), Gaps = 61/340 (17%)

Query: 41  STFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD 100
             F   Y  A+   +  +  IN          +L+              N +       +
Sbjct: 39  PPFARDYFRAMEPKSSAKTRINYAYDIRVFFHFLMEA----------NPNYK-------N 81

Query: 101 QIIRKSGDFDYRKITTKHIRSGVESRK----------HTPSSAIQFLTSMRVLFKWAVRQ 150
             I +    D  K+    I   +E  K          ++     + ++++R  + +  + 
Sbjct: 82  HTISQFDVSDLEKLEPVDIEEYMEYLKVYRHEDELITNSEKGLSRKMSALRSFYSYYFKH 141

Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----------------FWSEGSQPRL 194
           + +  NP L V+ PK   + I     +++                     +     +   
Sbjct: 142 QIITKNPTLLVDMPKLHDKAIIRLDADEVALLLDYVETCGSKLSGQALTYYHKTKDRDLA 201

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLL------- 245
               LL +G+R S+     +  +   NN  ++ T+K G  + V   +   K L       
Sbjct: 202 ILTLLLGTGIRVSECVGLDLTDVDFKNNGITV-TRKGGNQMVVYFGEEVEKALLTYINGD 260

Query: 246 --AMTPIGKE--TFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
             A TP+       F++  +++M         K  A +   NK  + H +R    T    
Sbjct: 261 RKAATPLSGHENALFLSTQRRRMGIQAMENMVKKYARQVTPNKKITPHKLRSTYGTSLYK 320

Query: 300 AGATAHELMATYGWKTVDQA-ETYTK-GADRIRLGIKNSR 337
                + +    G K V+   + Y     DR R      +
Sbjct: 321 ETGDIYLVADVLGHKDVNTTKKHYAAIDEDRRRKAASAVK 360


>gi|171741094|ref|ZP_02916901.1| hypothetical protein BIFDEN_00161 [Bifidobacterium dentium ATCC
           27678]
 gi|171276708|gb|EDT44369.1| hypothetical protein BIFDEN_00161 [Bifidobacterium dentium ATCC
           27678]
          Length = 286

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 32/264 (12%), Positives = 74/264 (28%), Gaps = 7/264 (2%)

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122
            P   P T +  + ++           ++  +        +          +T       
Sbjct: 9   RPEPFPQTWEQSVDQWLTYLRAAGRMPSTIKTRRVKLWGFVHYLAGKPPENVTRADCEKW 68

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           +     +  +      ++   F W V  +  + NP + +  P        P    +    
Sbjct: 69  MGREGLSAETRKGIRATLTSYFDWCVDHDLRSDNPAIGL--PHVAGSKPHPRPCPETGIR 126

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL---QNNIFSIKTQKTGTIITVELPD 239
           ++      + RL        GLR S+  +   + +    +N       K      + LP 
Sbjct: 127 EAMDGLSERDRLMVRLGAELGLRRSEIAKVSGRDVVGPADNALLRVVGKGDKQRLIPLPQ 186

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISAD 299
                + +   G    F + +   ++        K   +    +   H +R  +AT +  
Sbjct: 187 DLA--VRIRQTGDGWLFPSRNDHGISHLTAGRVGKIVGSALPQSYGTHSLRHRAATQAYL 244

Query: 300 AGATAHELMATYGWKTVDQAETYT 323
           A      +    G  +V   + Y 
Sbjct: 245 ATHDLLAVSTLLGHSSVATTQRYV 268


>gi|222085948|ref|YP_002544480.1| tyrosine site-specific integrase/recombinase protein [Agrobacterium
           radiobacter K84]
 gi|221723396|gb|ACM26552.1| tyrosine site-specific integrase/recombinase protein [Agrobacterium
           radiobacter K84]
          Length = 431

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 61/378 (16%), Positives = 113/378 (29%), Gaps = 66/378 (17%)

Query: 25  FRKGHG------RRIRLP--YPHESTFIPAYMS---ALTGSTPKREYINSPRKKPTTLKW 73
           +R G G      +RI++     H         S   A            +  +K   +  
Sbjct: 47  YRPGAGGRGVSKKRIKIGTLATHSPEAAREEASRTLARVTLGSDPAAARTDERKGQVVAA 106

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKS---------GDFDYRKITTKHIRSGVE 124
           +   + +          +   ++   ++ I+              D  ++  K IR  V 
Sbjct: 107 VAETWLEEHVLIKRKPKTYNEYKLAVERYIKPVLGSLKFALVEPSDVLRMQAKIIRGKVN 166

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPWTKEDMQQF 182
                 + A + L ++  ++ WA   + V    NP  S+ER K      R  T E++   
Sbjct: 167 KANGGRTMANRALATLSAIYGWAQDLKIVPLGFNPVTSIERFKENQIE-RFLTSEEIGSL 225

Query: 183 KSFWSE------------------------------GSQPRLAFEFLLYSGLRCSDSCRA 212
            +  +E                              G     A    L++G R S+  R 
Sbjct: 226 ATALTEAETIGLPYEVDETKAKAKHANRVENRRTVYGEHAIAAIRLYLFTGCRRSEILRL 285

Query: 213 GVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS 270
               +     I  +   KTG    V L      +L       +      D    +    +
Sbjct: 286 TWSDVDLERGILFLPDSKTGKK-PVILSPQAQAILTNLTRVGKYVIAGADAGTKDEAPRA 344

Query: 271 IW---FKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
                +KA   +AG++K   H +R   A+I A  G     +    G K +   + Y    
Sbjct: 345 DIDRPWKAVTRRAGLHKLRLHDLRHTYASIGAGGGQGLPIIGKLLGHKNIATTQRYAH-- 402

Query: 327 DRIRLGIKNSRRISSVVD 344
               L     +R++  + 
Sbjct: 403 ----LDTNPMKRVAGFIG 416


>gi|206975676|ref|ZP_03236588.1| integrase family protein [Bacillus cereus H3081.97]
 gi|206746138|gb|EDZ57533.1| integrase family protein [Bacillus cereus H3081.97]
          Length = 388

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 45/290 (15%), Positives = 94/290 (32%), Gaps = 40/290 (13%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
           +L++++ +      +   +  ++    +  II   G+ +  ++T   I+          +
Sbjct: 70  YLLNQWLEDKQ-TKVKKQTLQTYRWLVEKHIIPAIGNMELTQLTPMAIQKLYNQLTKEKA 128

Query: 132 SAIQFLTSMRVLFKW----AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            + + +  +  L       A R   ++ NP   V+RPK + + I+ W  +++Q F     
Sbjct: 129 LSDENIQKVHTLINDSLKKAERWGIISKNPASLVDRPKAEKKEIKVWDVKEVQTFLKHAQ 188

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKT--------------QKTGT 231
             S+  +AF   L +G+R  +      + +        I                 K+G+
Sbjct: 189 SHSRYYIAFLLALTTGMRQGEILGLRWRDVDFETGCIRITQTLSSDGKEILPYTKTKSGS 248

Query: 232 IITVELPDG----FMKLLAMTPIGK-----------ETFFINNDKQKMNATQFSIWF-KA 275
             TV+LP+       K   +    K           +           N +     F   
Sbjct: 249 R-TVDLPEETIIQLKKHRKLIESEKLEAGSEVYNNWDLVVCTELGTPTNKSNIRRSFNSI 307

Query: 276 KATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
                      H +R   AT+    G     +    G   V    +TY+ 
Sbjct: 308 IKKAKIPKIRFHDMRHTHATLLLLQGVNPKIVSERLGHADVRITLDTYSH 357


>gi|28211234|ref|NP_782178.1| DNA integration/recombination protein [Clostridium tetani E88]
 gi|28203674|gb|AAO36115.1| DNA integration/recombination protein [Clostridium tetani E88]
          Length = 343

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 44/316 (13%), Positives = 104/316 (32%), Gaps = 53/316 (16%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF----DYRKITTKHIRSGV--- 123
           + + I ++        L   +  S+ES      R   D     + + IT +  +  +   
Sbjct: 16  INYAIDDFMFYCQQKDLRPKTIASYESTLRLFARYLEDTFSINNVKDITEEMCKDYITYT 75

Query: 124 -------------------------ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158
                                      +K + ++   ++ +++V F W + +    +N  
Sbjct: 76  KERGKYTFVADKNTTFINQPSNREDYGKKISTTTVNNYIRNLKVFFNWCIEERITNVNNM 135

Query: 159 LSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGV 214
             +++ K         T E+ ++   +         +  +  + ++ +G+R  ++    +
Sbjct: 136 QRIKQFKNNRISKDQLTDEEFKRLVRYLDTTKYHEFRDYVIIQLIIDTGMRIGETLALTI 195

Query: 215 QHLQNNIFSIKTQ----KTGTIITVELPDGFMKLLAMTP------IGKETFFINNDKQKM 264
            ++  +  +I  Q    K      V       +LL          +  +  F      ++
Sbjct: 196 DNVDLDRRAILIQAEINKGRKDRYVFYSYTMSRLLKRWIQYKDRYVESDLLFCVKRGTQL 255

Query: 265 NATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
             + F   F     +A ++K  S H +R   A     AG +  +L    G  +V   E  
Sbjct: 256 QISNFEKNFSKYIKRARIDKKISPHTLRNNYARRFLLAGGSIFDLSRILGHSSVTVTEK- 314

Query: 323 TKGADRIRLGIKNSRR 338
              AD   L  ++ R+
Sbjct: 315 -AYAD---LTTEDIRK 326


>gi|260431124|ref|ZP_05785095.1| site-specific tyrosine recombinase XerC [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260414952|gb|EEX08211.1| site-specific tyrosine recombinase XerC [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 306

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 39/288 (13%), Positives = 87/288 (30%), Gaps = 29/288 (10%)

Query: 72  KWLISEYRKS-AHWGSLAVNSRISFESYFDQII--------RKSGDFDYRKITTKHIRSG 122
           +  +  + +S +     + N+  ++       +         + G     +I+   +R+ 
Sbjct: 9   RDALQLWLESLSALAGRSDNTTNAYRRDVTDFLAFMTLHHNERQGLAALERISVTDMRAW 68

Query: 123 VESRKHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
           +  ++ +     S  + L++++  ++W   +E       LS   PK   +  RP  ++  
Sbjct: 69  MAQQRDSGVGARSLARKLSAVKSFYRWLAEREGFEPTAVLSTRAPKFTKKLPRPLAEDAA 128

Query: 180 QQFKSFWS-------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
           +                ++       L   GLR S++                  K    
Sbjct: 129 RAMIETVELQSSSDWVAARDVAVVTLLYGCGLRISEALSLTGADAPLPATLRIVGKGDKE 188

Query: 233 ITVELPDGFMKLLAM-------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS 285
             V +     + +              E  F     + +N             + G+  +
Sbjct: 189 RIVPVIPAARQAVDRYLELCPHPQGATEPLFRGVRGKALNPKAIQSVMAKARMQLGLPAT 248

Query: 286 A--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           A  H +R   AT    AG     +    G  ++   + YT   D  RL
Sbjct: 249 ATPHAMRHSFATHLLSAGGDLRAIQELLGHASLSTTQAYT-AVDTARL 295


>gi|170769298|ref|ZP_02903751.1| integrase [Escherichia albertii TW07627]
 gi|300901680|ref|ZP_07119738.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 198-1]
 gi|170121950|gb|EDS90881.1| integrase [Escherichia albertii TW07627]
 gi|300354904|gb|EFJ70774.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 198-1]
          Length = 330

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 42/239 (17%), Positives = 85/239 (35%), Gaps = 22/239 (9%)

Query: 94  SFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQ 150
           S+     +++R+ GD    ++T K +      +      PSS  + L  +  +F   +  
Sbjct: 81  SYRVRLGKVVREMGDPRASQMTRKFMLEYRSEKLQAGLMPSSINRDLCVLSTMFTVLIEA 140

Query: 151 E-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDS 209
           E +   NP   + + K +   +   + +++++      EG   R+A    L +G R S++
Sbjct: 141 EVFHNANPVRGIRKLKVQNTEMAFLSDDEIERLLERL-EGDARRVAI-LCLSTGARWSEA 198

Query: 210 CRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF 269
                +H+  N  +    K G   +V + D  +              I   +  +     
Sbjct: 199 SELRGEHIVGNRVTFFNTKNGKSRSVPVADSVVP------------LIKTRRTGLLYQVD 246

Query: 270 SIWFKAKATKAGVNK----SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            + F+    +   +     + H +R   AT     G     L    G  T+ Q  TY  
Sbjct: 247 YLKFREILQEVKPDLPKGQATHVMRHTFATHFMMNGGNIVTLQRILGHATIQQTMTYAH 305


>gi|153939017|ref|YP_001391193.1| phage integrase family site specific recombinase [Clostridium
           botulinum F str. Langeland]
 gi|152934913|gb|ABS40411.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum F str. Langeland]
 gi|295319232|gb|ADF99609.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum F str. 230613]
          Length = 330

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 46/294 (15%), Positives = 97/294 (32%), Gaps = 47/294 (15%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFD----QIIRKSGDFDYRKITTKHIRSGVESRKH-- 128
           I E+       +L+  + +S+E         +  + G  D +K+T K IR  +   K+  
Sbjct: 8   IDEFMIYCESKNLSKKTMMSYEQTLRLFTKYLEEEKGIGDVKKVTEKMIREYINYTKNRG 67

Query: 129 --------------TP------------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162
                         TP            ++   ++ +++V F + + Q Y+  +   +++
Sbjct: 68  KYTIVGDKETLKTNTPEMRKDYGKKVSITTINNYIRNIKVFFNFLLEQSYIKKDVVKNIK 127

Query: 163 RPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218
           + K + +     T     +             +  L    LL +G+R  +     V+++ 
Sbjct: 128 QFKNQRKAKEFITDSQFAELLRHIDTTKFHERRDHLCIMMLLDTGMRIGECLEIKVENID 187

Query: 219 NNIFSI------KTQKTGTIITVE--LPDGFMKLLAMTP--IGKETFFINNDKQKMNATQ 268
            N  SI         K    +     +     + L      +  +  F       +    
Sbjct: 188 MNYRSILLPAVDTKGKRDRYVYFSQVMQKELRRWLQYKDRYVESDYLFCTTKGTPVLIRT 247

Query: 269 FSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
           F    K  A +AG+ +   H +R   A     +G + + L    G  +V   E 
Sbjct: 248 FERKLKDYANRAGLKDIHPHQLRNNFAKRFLMSGGSIYILSQVLGHSSVKVTEQ 301


>gi|229061589|ref|ZP_04198932.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus cereus AH603]
 gi|228717710|gb|EEL69361.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus cereus AH603]
          Length = 362

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 43/293 (14%), Positives = 95/293 (32%), Gaps = 28/293 (9%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHT 129
              L+  + +     S   ++   ++     +++ + G+     I    + +  +     
Sbjct: 49  FSQLVEIWMQEKE-SSCRPSTLYQYKRILRSRVMPEFGEKRLSDIKPLTVHNFHQKLLKE 107

Query: 130 PSSAIQFLTS---MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             +     +    ++ +    V  E +  NP    +RPK K +    WT E+  +F  + 
Sbjct: 108 GLTTKYISSVDVMLKQILDKGVELEMINSNPAKKAKRPKVKKKAQASWTIEEAMKFMEYA 167

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT------------ 234
                  + F   L++G+R  +        +     +I  Q+T T++             
Sbjct: 168 KIQGSYYITFVLALHTGMRIGEVLALKWNDINFENKTIHVQRTLTLVDGKYELGETKTEA 227

Query: 235 ----VELPDGFMKLLAMTPIGK-----ETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284
               + + +  M  L      K     +      +K+ ++        KA      V   
Sbjct: 228 SNRIIPMTEELMGELLEYQNHKKENSFDLLICTRNKKIVHPYTIRYQMKALCEAIDVPYI 287

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNS 336
             H +R+   TI  D+GA A  +    G   V      YT   +  ++ +   
Sbjct: 288 RFHDIRRTFTTILIDSGANAKVVSKLLGHTNVSTTLNIYTDVYEERQIEVTEM 340


>gi|91209996|ref|YP_539982.1| putative phage integrase [Escherichia coli UTI89]
 gi|91071570|gb|ABE06451.1| putative phage integrase [Escherichia coli UTI89]
          Length = 330

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 42/239 (17%), Positives = 85/239 (35%), Gaps = 22/239 (9%)

Query: 94  SFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQ 150
           S+     +++R+ GD    ++T K +      +      PSS  + L  +  +F   +  
Sbjct: 81  SYRVRLGKVVREMGDPRASQMTRKFMLEYRSEKLQAGLMPSSINRDLCVLSTMFTVLIEA 140

Query: 151 E-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDS 209
           E +   NP   + + K +   +   + +++++      EG   R+A    L +G R S++
Sbjct: 141 EVFHNANPVRGIRKLKVQNTEMAFLSDDEIERLLERL-EGDARRVAI-LCLSTGARWSEA 198

Query: 210 CRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF 269
                +H+  N  +    K G   +V + D  +              I   +  +     
Sbjct: 199 SELRGEHIVGNRVTFFNTKNGKSRSVPVADSVVP------------LIKTRRTGLLYQVD 246

Query: 270 SIWFKAKATKAGVNK----SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            + F+    +   +     + H +R   AT     G     L    G  T+ Q  TY  
Sbjct: 247 YLKFREILQEVKPDLPKGQATHVMRHTFATHFMMNGGNIVTLQRILGHATIQQTMTYAH 305


>gi|319937080|ref|ZP_08011489.1| hypothetical protein HMPREF9488_02323 [Coprobacillus sp. 29_1]
 gi|319807858|gb|EFW04443.1| hypothetical protein HMPREF9488_02323 [Coprobacillus sp. 29_1]
          Length = 391

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 57/363 (15%), Positives = 118/363 (32%), Gaps = 46/363 (12%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87
           G  +R              Y +++   +  +  I   RK+  TL  +  EY +       
Sbjct: 26  GVTQRHTKSGFRTKKEARNYEASIIEKSNAKVLIPESRKR--TLNDVFDEYVEIEGKIKW 83

Query: 88  AVNSRISF-ESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS--SAIQFLTSMRVLF 144
           A  +   + +++   +    G+     ++   +++ +       +  +         V+F
Sbjct: 84  APATLYYYIKTHQTYVKGNFGNVPIESVSYVSLQAHINELSQRYNYPTVKNIKKVYSVIF 143

Query: 145 KWAVRQEYVAINPCLSVERPKR--KTEGIRPWTKEDMQQFKSFWSEGSQPR--------- 193
           K  VR  Y++INP  ++  P +  K EG+   + +D+++      + S  R         
Sbjct: 144 KHGVRAGYISINPVPNILLPNKPEKKEGVEIISDDDLKRLIEEIIKASPNRCFAKKAQYK 203

Query: 194 -----LAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ-----------------KT 229
                +A     Y+GLR S+      +      N  +I+ +                 KT
Sbjct: 204 YKSYGIALLIGRYTGLRISEVMALKKEDFDLERNQLTIRRRIEHAGLKRKEIYLTERLKT 263

Query: 230 GT-IITVELPDGFMKLLAMTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGVNKSA 286
            +    VE+     + L    +         +     ++   F    +  A K  +    
Sbjct: 264 KSSKARVEICSILSEYLKSWFVENPYDFVICDEHGDFISPVNFQERIRDTAKKLDIKFHY 323

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK--GADRIRLGIKNSRRISSVV 343
           H +R   AT    AG     +       TV+     YT     D+ ++           +
Sbjct: 324 HMLRHTYATELMVAGVNPIVVRDLLRHSTVNTTWNVYTHPSRDDQRKVLDDLYDDNVEFM 383

Query: 344 DSD 346
           D+D
Sbjct: 384 DND 386


>gi|313681225|ref|YP_004058963.1| integrase family protein [Sulfuricurvum kujiense DSM 16994]
 gi|313154085|gb|ADR32763.1| integrase family protein [Sulfuricurvum kujiense DSM 16994]
          Length = 297

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 41/266 (15%), Positives = 96/266 (36%), Gaps = 27/266 (10%)

Query: 89  VNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFK 145
             +   + S     I+   GD   R++   ++        ++ T  +  ++   +R +F+
Sbjct: 18  PRTHERYLSIIKHSILPVFGDSPIRELKVSNVEKWRNDLLKRFTAKTVKEYQIVLRGIFQ 77

Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLR 205
            A+  E +  NP  +++  K K   + P+   +++          +  LA  F+  +G+R
Sbjct: 78  KALHDEEIGKNPIDALDSLKVKKPHVVPFMPYEVKLILDTAQGWFKNYLALGFM--TGMR 135

Query: 206 CSDSCRAGVQHL------------QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI--- 250
             +      +++            +       T+   +I  + + D  +  L        
Sbjct: 136 VGEIVALKWENVNLKKREIYVCASRIEGVEGTTKTQSSIRYIPIIDTLVPFLEAQKKLSG 195

Query: 251 GKETFFINNDKQKMN-ATQFS-IWFKAKATKAGVNK-SAHGVRKFSATISADAGA-TAHE 306
            KE  F+N   +            +K+   +  ++    + +R   AT    +G  + +E
Sbjct: 196 DKEYVFVNQYGEVFYDYKTIGANQWKSILKECKLDHRRMYEMRHTCATNLLMSGQYSVNE 255

Query: 307 LMATYGWKTVDQA-ETYTK--GADRI 329
           + +  G  T     E YT+   A+R 
Sbjct: 256 IASILGHTTPQMLFERYTRNISAERK 281


>gi|166154210|ref|YP_001654328.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis
           434/Bu]
 gi|166155085|ref|YP_001653340.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|301335456|ref|ZP_07223700.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis
           L2tet1]
 gi|165930198|emb|CAP03683.1| integrase/recombinase [Chlamydia trachomatis 434/Bu]
 gi|165931073|emb|CAP06637.1| integrase/recombinase [Chlamydia trachomatis L2b/UCH-1/proctitis]
          Length = 300

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 31/224 (13%), Positives = 71/224 (31%), Gaps = 23/224 (10%)

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
              K + ++  + L +++V F +    + +   P   +E PK         + E++    
Sbjct: 65  HKAKESETTLARRLIALKVFFHFLKDVKMLDQQPF--IEHPKIWKRLPSILSTEEVNSLL 122

Query: 184 SFWS--------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
                         S+          +G+R S+ C   +  + ++   +  +   T + V
Sbjct: 123 DQPLNIPNLDTHIASRDAAILYTFYATGIRVSELCDLCIGDISDDFIRVTGKGRKTRL-V 181

Query: 236 ELPDGFMKLLAM-----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284
            +     + +                 +E  F++   +K++ +         A      +
Sbjct: 182 PISIKAKQAIDAYLSSFRDELQKKNPSEEHVFLSIRGKKLDRSCVWKRITFYAKLVTTKR 241

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
            S H +R   AT   +  A    +    G   +   E YT  A 
Sbjct: 242 ISPHSLRHAFATHLLNNHADLRIIQEMLGHSRISSTEIYTHVAS 285


>gi|126663343|ref|ZP_01734341.1| integrase [Flavobacteria bacterium BAL38]
 gi|126625001|gb|EAZ95691.1| integrase [Flavobacteria bacterium BAL38]
          Length = 295

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 32/227 (14%), Positives = 85/227 (37%), Gaps = 19/227 (8%)

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM-----QQFKSF 185
           +S  + +++++  +K+ ++ + +++NP L  +  K   +   P++++++     +   + 
Sbjct: 67  TSVNRKISALKSYYKFLLKVKQISVNPLLKHKSLKTAKKVQIPFSEKELLDVFSENEYAD 126

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKL 244
             EG + R   E    +G+R ++     +  +     +I+   K      + + D  + L
Sbjct: 127 DFEGIRNRFIIELFYTTGIRRAELINLNLNSVSEIQKTIRVIGKRNKERIIPVLDCTLNL 186

Query: 245 LAM---------TPIGKETFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSAHGVRKFS 293
                            E   ++    K++ +                  KS H +R   
Sbjct: 187 YKKYKSLRNGLELISDNEMLILSKTGNKVSESFVYRLINDYFSTVSKKEKKSPHVLRHSF 246

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKG--ADRIRLGIKNSRR 338
           AT   + GA  + +    G  ++   + YT    A+  ++  +   R
Sbjct: 247 ATHLLNNGADLNSVKELLGHASLSSTQIYTHSSLAELKKVYQEAHPR 293


>gi|77164210|ref|YP_342735.1| Phage integrase [Nitrosococcus oceani ATCC 19707]
 gi|76882524|gb|ABA57205.1| Phage integrase [Nitrosococcus oceani ATCC 19707]
          Length = 310

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 45/247 (18%), Positives = 90/247 (36%), Gaps = 30/247 (12%)

Query: 115 TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
           T + +   +  R        +  + +   +KWA++   V  +P    ++PKR        
Sbjct: 59  TEQFVAWQMRKRGTKAHIVARRSSCLGSFYKWAMKNALVESDPIYLADKPKRPYRIPVWL 118

Query: 175 TKEDMQQFKSF-----------------WSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQ 215
            KE+ + F+                     +  + R  + F  +L SGLR S++    V+
Sbjct: 119 EKEEQRAFQEAVQRVEDLPENIFGRTQEHIKAVRRRYDVLFGLILNSGLRISEALAVKVR 178

Query: 216 HLQNNIFSIKT----QKTGTIITVELPDGFMKLLAMTPIGK---ETFFINNDK-QKMNAT 267
            ++      K+     K      V LP+ F ++L     G+   +  F      +     
Sbjct: 179 DVRMVNGVAKSVRIIGKGNRERLVPLPEAFGQVLGAWLQGRGGEDFVFAKAPGEKPPGPH 238

Query: 268 QFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
               + +    +AG++K  + H +R   AT   ++GA   ++ A  G   +   + YT  
Sbjct: 239 AVRAYLRRLIERAGIDKPVTPHKLRHTYATRLLESGAELVDIQALLGHVDLSTTQIYTH- 297

Query: 326 ADRIRLG 332
               R+ 
Sbjct: 298 VSEERMA 304


>gi|158340051|ref|YP_001521220.1| phage integrase / plasmid pRiA4b ORF-3-like protein [Acaryochloris
           marina MBIC11017]
 gi|158310292|gb|ABW31907.1| phage integrase / plasmid pRiA4b ORF-3-like protein [Acaryochloris
           marina MBIC11017]
          Length = 654

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 52/306 (16%), Positives = 105/306 (34%), Gaps = 37/306 (12%)

Query: 51  LTGSTPKREYINSPRKKPTT-----LKWL-ISEYRKSAHWGSLAVNSRISFESYFDQIIR 104
           L             R +P T     L+W+ + E+ +S     +  N+  ++E    Q++ 
Sbjct: 11  LADQAATPIDAARSRTQPATTPLADLRWMRVEEFLRS---REIRPNTHKAYERDLKQLMD 67

Query: 105 KSGDFDYRKITTKHIRSGVESRKHTP---------SSAIQFLTSMRVLFKWAVRQEYVAI 155
                 + +IT++ +       K  P         ++  + L +++  FKW   ++Y+  
Sbjct: 68  -WTPKGWHEITSRDLDRYKTYLKTEPNHRGKLRKCATINRSLAALQSFFKWLTVRDYITK 126

Query: 156 NPCLSVERPKRKTEGIRPWTKEDMQQ-FKSFWSEGSQPRLAFEF--LLYSGLRCSDSCRA 212
           NP L +E+ K      + ++++++   +++    G           L+  GLR S+    
Sbjct: 127 NPALLLEKLKSDPLLPQEFSQDEVDNLYQAICDRGFHSFRDRALLHLIDHGLRASEIQGL 186

Query: 213 GVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP----------IGKETFFI----N 258
            V         I+  K  ++ +V L     +                  +   F+    N
Sbjct: 187 NVGDYDGQRVHIREAKADSVGSVPLLSKARRAFDQYKQWREQQGEVLEDESPLFVSHSNN 246

Query: 259 NDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVD 317
           +  Q++        FKA A  A V N   H  R   AT        +         K+  
Sbjct: 247 SKGQRLQYWGIYKIFKAIADIAEVENAHPHRGRHTLATRLVMKDMDSILARKVTRHKSEQ 306

Query: 318 QAETYT 323
               Y+
Sbjct: 307 SFVRYS 312


>gi|222087381|ref|YP_002545918.1| tyrosine site-specific integrase/recombinase protein [Agrobacterium
           radiobacter K84]
 gi|221724829|gb|ACM27985.1| tyrosine site-specific integrase/recombinase protein [Agrobacterium
           radiobacter K84]
          Length = 319

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 49/275 (17%), Positives = 91/275 (33%), Gaps = 35/275 (12%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTK-----HIRSGVESRKHTPSSAIQFLTS 139
              AVN+  S+E   D +     +   R             SG+  +   PSS  + L++
Sbjct: 21  RGAAVNTLQSYERDLDDLHSFLSERSVRLTEAGSNDLGAYLSGLSRQGFKPSSQARRLSA 80

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KSFWSEGSQPRL- 194
           MR  +K+   +     +P   ++ PK+     +    E++ +     +   +E S  +L 
Sbjct: 81  MRQFYKFLYAEGLRTDDPTGILDAPKKGRALPKTMGVEEVTRLLTQAEKEAAEESPDQLQ 140

Query: 195 ------AFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAM 247
                   E L  +G+R S+      + L     F +   K      V L    +  L  
Sbjct: 141 RLRMLVLLELLYATGMRVSELVTLPAKVLDQEGRFLMIRGKGNKERLVPLSQSAIAALKT 200

Query: 248 -------------TPIGKETFFINNDKQK--MNATQFSIWFKAKATKAGVN---KSAHGV 289
                         P  +  +      ++  +    F+   K  A +AG+     S H +
Sbjct: 201 YGKLQTQVAANTKQPAPESAWLFPAASKQGYLPRQVFARDLKDLAIRAGLTPSLISPHVM 260

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           R   A+     GA    +    G   +   + YT 
Sbjct: 261 RHAFASHLLANGADLRVVQELLGHSDISTTQIYTH 295


>gi|148642488|ref|YP_001273001.1| phage integrase family integrase/recombinase [Methanobrevibacter
           smithii ATCC 35061]
 gi|148551505|gb|ABQ86633.1| integrase-recombinase protein, phage integrase family
           [Methanobrevibacter smithii ATCC 35061]
          Length = 302

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 44/279 (15%), Positives = 90/279 (32%), Gaps = 35/279 (12%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQ 135
             Y  S    + + N+  ++ S   +               K       S        ++
Sbjct: 31  ESYITSLKNNNYSQNTIKTYSSIIHKFTTYL-KNQIAIYNEKEFIKYFNSYIL----YLK 85

Query: 136 FLTSMRVLFKWAVR---QEYVAINPC---LSVERPKRKTEGIRPWTKEDMQQFKS--FWS 187
            + ++   + + V    ++++  N      S+  PKR        T+++++Q      W 
Sbjct: 86  QVKNVSQNYIYLVTVVVKKFLEFNNIHFLDSITTPKRIKSPPNFLTQKEVKQLLDSITWD 145

Query: 188 EGS----------QPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITV 235
           E S          + +L    L  SGLR S+     V ++  +    SI   K  + +  
Sbjct: 146 ENSDSDFRIITKLRDKLIVTLLYSSGLRVSELINLSVDNVNFEGKQLSI-VGKNNSRVI- 203

Query: 236 ELPDG-----FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288
            L D        K L           +N     +      +  K    ++G+ K  + H 
Sbjct: 204 -LLDESTKQLIQKYLEKRTQKSNYLVVNKSGNPLTPRYVQLMIKKYGNESGIEKKITPHI 262

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           +R   AT   + G     +    G   +   + Y++ A+
Sbjct: 263 LRHSYATHLFEQGVNIKIIQQLLGHSNLSTTQIYSQDAN 301


>gi|327188713|gb|EGE55912.1| tyrosine site-specific integrase/recombinase protein [Rhizobium
           etli CNPAF512]
          Length = 317

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 50/274 (18%), Positives = 87/274 (31%), Gaps = 34/274 (12%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTK-----HIRSGVESRKHTPSSAIQFLTS 139
              A N+  S+E   D I         R             + + S+   PSS  + L +
Sbjct: 20  RGAAANTLQSYERDLDDIRSFLNGRSIRLTEAASADLSAYLASLASQGFKPSSQARRLAA 79

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-------SEGSQP 192
           MR  +K+   +     +P   ++ PK+     +    E++ +  S         + G   
Sbjct: 80  MRQFYKFLYAEGIRTDDPTGVLDAPKKGRPLPKTMGVEEVGRLLSQAQTEADDPAPGQLQ 139

Query: 193 RLAFEFL----LYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLL-- 245
           RL    L      +G+R S+        L     F +   K      V L    +K L  
Sbjct: 140 RLRMLALLELLYATGMRVSELVSLPAGVLDQEGRFLMIRGKGNKERLVPLSQSAIKALKS 199

Query: 246 ----------AMTPIGKETFFINNDKQK--MNATQFSIWFKAKATKAGVN---KSAHGVR 290
                     A     +  F  +   ++  +    F+   K  A +AG+     S H +R
Sbjct: 200 YGRLLAAENAAAKEPQESPFLFSAASKEGYLPRQVFARDLKNLAIRAGLTPSLISPHVMR 259

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              A+     GA    +    G   +   + YT 
Sbjct: 260 HAFASHLLANGADLRVVQELLGHSDISTTQIYTH 293


>gi|323175010|gb|EFZ60625.1| integrase [Escherichia coli LT-68]
          Length = 330

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 44/235 (18%), Positives = 85/235 (36%), Gaps = 14/235 (5%)

Query: 94  SFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQ 150
           S+     ++IR+ GD     +T K +      +      PSS  + L  +  +F   +  
Sbjct: 81  SYRVRLGKVIREMGDPRASHMTRKFMLEYRSEKLQAGLMPSSINRDLCVLSTMFTVLIEA 140

Query: 151 E-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDS 209
           E +   NP   + + K +   +   + ++++Q      EG   R+A    L +G R  ++
Sbjct: 141 EVFHNANPVRGIRKLKVQNTEMAFLSDDEIEQLLERL-EGDARRVAI-LCLSTGARWREA 198

Query: 210 CRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF 269
                +H+  N  +    K G   +V + D  + L+     G           +++  +F
Sbjct: 199 SELRGEHIVGNRVTFFNTKNGKSRSVPVADSVVPLIKTRRTGLLY--------QVDYLEF 250

Query: 270 SIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
               +         ++ H +R   AT     G     L    G  T+ Q  TY  
Sbjct: 251 REILQEVKPDLPKGQATHVMRHTFATHFMMNGGNIVTLQRILGHATIQQTMTYAH 305


>gi|86747659|ref|YP_484155.1| tyrosine recombinase XerD [Rhodopseudomonas palustris HaA2]
 gi|86570687|gb|ABD05244.1| tyrosine recombinase XerD subunit [Rhodopseudomonas palustris HaA2]
          Length = 347

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 41/287 (14%), Positives = 86/287 (29%), Gaps = 41/287 (14%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFD-----YRKITTKHIRSGVESRKHTPSSAIQFLTS 139
              + N+  ++      +    G              +   + +++R    +S  + L++
Sbjct: 49  QGASANTLDAYRRDLADLSHYLGRRRKSIASADTEALRGYLADLDTRGFASTSVARRLSA 108

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS------------ 187
           +R LF++ + +     +P   +  PKR     +  +  D+ +                  
Sbjct: 109 LRHLFRFLLSERIRVDDPAAILSGPKRGRGLPKVLSIADVDRLLGCARQEADAAEGAAGL 168

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKLLA 246
             ++     E L  +GLR S+         + +    +   K      V L       + 
Sbjct: 169 RAARLYCLLEVLYATGLRVSELVALPRTAARGDARMIVVRGKGDKERLVPLNGSSKAAMT 228

Query: 247 M-------------------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---K 284
                                P  K  F    +   +    F+   K  A +AG+     
Sbjct: 229 RYLATAAAAEKAAAGGKKTAAPASKWLFPSFGESGHLTRQHFARDLKELAARAGLPPRLV 288

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIR 330
           S H +R   A+     GA    +    G   +   + YT    DR++
Sbjct: 289 SPHVLRHAFASHLLHNGADLRIVQTLLGHSDISTTQIYTHVVEDRLK 335


>gi|253579255|ref|ZP_04856525.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849353|gb|EES77313.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 350

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 51/296 (17%), Positives = 94/296 (31%), Gaps = 30/296 (10%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           I  Y +      L  NS  + +   +  I+   G     +IT   I     + +    S 
Sbjct: 62  IQVYFEDKK-NELKENSIRNKQHMMNKHIVPYFGTRKMNEITPAEIIQWQNAIQEKGYSK 120

Query: 134 IQ---FLTSMRVLFKWAVRQEYVAINPCLSVER-PKRKTEGIRPWTKEDMQQFKSFWSEG 189
                    +  LF  A +   +  NPC  V++  K     +  WTK +  +F +    G
Sbjct: 121 TYERMIQNQLNALFNHAQKIYNLKENPCKKVKKMGKSDANKLEFWTKAEYDRFIAGIEPG 180

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ-------------KTGTII- 233
           S+  L FE L ++G+R  +     +       N+  I                KT   + 
Sbjct: 181 SEDYLIFEILFWTGIREGELLALSLSDFDMSGNLLHINKTYNRIKKRDVIDTPKTENSVR 240

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKF 292
           T+++P+   + +         F  +     + A       K      GV     H +R  
Sbjct: 241 TIDIPNFLKEEVQEYAKKHYGFPEDQRLFPIVARTLQKRLKKYEALTGVKPIRVHDIRHS 300

Query: 293 SATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVVDSDD 347
                   G     +    G K +     TY        L     ++++ ++D+  
Sbjct: 301 HVAYLIYQGVEPLIIKERLGHKDIQMTLNTYGH------LYPSQQKKVAEMLDNKR 350


>gi|149915599|ref|ZP_01904125.1| tyrosine recombinase [Roseobacter sp. AzwK-3b]
 gi|149810491|gb|EDM70334.1| tyrosine recombinase [Roseobacter sp. AzwK-3b]
          Length = 304

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 51/296 (17%), Positives = 91/296 (30%), Gaps = 32/296 (10%)

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII--------RKSGDFDYRKI 114
           SP  +     WL ++          A N+  ++       +           G     +I
Sbjct: 3   SPAARDALQGWLETQ----KALKGAADNTLEAYGRDVAGFLTFMTGHKGEMQGIAPLTRI 58

Query: 115 TTKHIRSGVESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
               +R+ +   +     P S  + L++++  ++W   +E       LS   PK + +  
Sbjct: 59  GVTDMRAWMAFIRGEDVGPRSLARKLSAVKSFYRWLAEREGFDATAVLSARAPKFQRKLP 118

Query: 172 RPWTKEDMQQFKSFWSE-------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
           RP   E  Q                ++ +     L   GLR S++       L       
Sbjct: 119 RPLAPEAAQDLIDTLELQSATPWVAARDQAVVTLLYGCGLRISEALGLTGGDLPMGEALR 178

Query: 225 KTQKTGTIITVELPDGFMKLLAMTPI-------GKETFFINNDKQKMNATQFSIWFKAKA 277
            T K G    V +       +A                F       +N        +A  
Sbjct: 179 ITGKGGKERIVPVIAPARDAVAHYARLCPFDLRPGTPLFRGMRGGPLNPRAVQKVTEAAR 238

Query: 278 TKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           T+ G+  +A  H +R   AT   +AG     +    G  ++   + YT   D  RL
Sbjct: 239 TQLGLPATATPHAMRHSFATHLLNAGGDLRAIQELLGHASLSTTQAYT-AVDTSRL 293


>gi|251772880|gb|EES53439.1| putative phage integrase [Leptospirillum ferrodiazotrophum]
          Length = 337

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 62/322 (19%), Positives = 110/322 (34%), Gaps = 23/322 (7%)

Query: 16  TRHGKIIYYFRKG-HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
            R    I++      GRR R           A    L        +     K+   L W 
Sbjct: 4   KRKDSPIWWVSFTVRGRRTRCSAGTTD---KAQALELHDRWKSEAWREISLKEKPKLGW- 59

Query: 75  ISEYRKSAHWGSL--AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP-- 130
                 +  W  +  A  +    E++   I          +I  + I S    +K T   
Sbjct: 60  ---KEAALKWLEVKSAKATIHDDEAHLLFIQNFWKGKKLSEIGKEEIDSLKVKKKATGVS 116

Query: 131 -SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            ++  + L+ +R + + + +  ++   P   VE      + IR  TKE+  +  S+  E 
Sbjct: 117 NATVNRMLSLVRAILRMSFKLGWIESVP--PVELMPEPKKRIRWLTKEEAAKLLSYLPEH 174

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQN----NIFSIKTQKTGTIITVELPDGFMKLL 245
            Q R+A  F L +GLR  +        +              K    I + LPD  + LL
Sbjct: 175 -QERIAR-FALLTGLRQGNILGLEWSQVDLVRKVLWIHADQAKGRKAIGIPLPDAAVTLL 232

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATA 304
                    +       ++N    ++ ++    KAG+ N   H +R   A+     G   
Sbjct: 233 RELSGQHPQWVFTYKGNRINQVN-TLAWRKALKKAGIENFRWHDLRHCWASWHIQDGTPL 291

Query: 305 HELMATYGWKTVDQAETYTKGA 326
           + L    GW+++D    Y+  A
Sbjct: 292 YALKELGGWESMDMVMRYSHMA 313


>gi|170024532|ref|YP_001721037.1| integrase family protein [Yersinia pseudotuberculosis YPIII]
 gi|169751066|gb|ACA68584.1| integrase family protein [Yersinia pseudotuberculosis YPIII]
          Length = 335

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 42/285 (14%), Positives = 80/285 (28%), Gaps = 26/285 (9%)

Query: 56  PKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT 115
            K + +         L  L+S + +       +  +R       + I  + GD       
Sbjct: 44  QKDQVVEVSVSNTLKLSNLVSRWYEMHGQTLTSGKTRKVK---LEAICERLGDPLVTDFD 100

Query: 116 TKHIRSGVESR-----------KHTPSSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVER 163
                   E R               ++  +  + +R +F    R   ++  NP   + +
Sbjct: 101 KNAFAVYREQRLNGKWQTKGRAAPKQATVNREYSYLRAVFSELKRLGEWMGDNPLDGLRQ 160

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNI 221
            K   + +     ED+++      E     L       L +G R S++       L  + 
Sbjct: 161 FKEGDQELAFLYPEDIKRLLVACDESENKDLGNVVRICLATGARWSEAQGLSQSQLMPSR 220

Query: 222 FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281
            +    K+    TV +           P  + + F            F    K  A +  
Sbjct: 221 VTFTQTKSKRNRTVPISKRL---YDRLPKRRGSMF------SSCYDAFKHALKRSAIELP 271

Query: 282 VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
             +  H +R   A+     G     L    G  T+     Y   A
Sbjct: 272 KGQRTHVLRHTFASHFMMGGGNILVLQQILGHSTILMTMRYAHFA 316


>gi|56708875|ref|YP_164918.1| phage integrase family site specific recombinase [Ruegeria pomeroyi
           DSS-3]
 gi|56680560|gb|AAV97225.1| site-specific recombinase, phage integrase family [Ruegeria
           pomeroyi DSS-3]
          Length = 400

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 49/273 (17%), Positives = 92/273 (33%), Gaps = 24/273 (8%)

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK 117
            +      +   TL  +I +Y +        V++R       + ++ K      ++I   
Sbjct: 86  EDRTGVEVETKPTLGDVIPDYIE----KHAKVHNRDWKRK--EALLAKFAALHVKRIDEI 139

Query: 118 HIRSGVES----RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
                V++     K  P SA + L  ++ L  W V +  +  +P   ++   ++    R 
Sbjct: 140 KRADVVKACDLIHKSAPVSANRALAHLKHLMGWCVERGMIDASPIAGMKPLSKERSRERV 199

Query: 174 WTKEDMQQFKSFWS-EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQK 228
            T +++    +    EG       + L+ SG R ++        L              K
Sbjct: 200 LTDDELGALWTACDAEGYPFGDCMKLLILSGQRRAEVAEMRWTELDLEKRLWTLPSQRAK 259

Query: 229 TGTIITVELPDGFMKLLAMTPI--GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS- 285
            G   TV + D  + +L   P   G +  F    K  ++   F    K +  KA    + 
Sbjct: 260 NGRQHTVPITDAMIDVLRRVPRFLGSDYVFTTTGKSPVS--GFG-RLKDRLDKALPEGTE 316

Query: 286 ---AHGVRKFSATISADAGATAHELMATYGWKT 315
               H +R+  +T  A  G       A    KT
Sbjct: 317 PWIIHDLRRTMSTNMAMLGVPQPVTEALLNHKT 349


>gi|49474798|ref|YP_032840.1| integrase /recombinase xerD [Bartonella quintana str. Toulouse]
 gi|49240302|emb|CAF26784.1| Integrase /recombinase xerD [Bartonella quintana str. Toulouse]
          Length = 315

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 36/285 (12%), Positives = 88/285 (30%), Gaps = 33/285 (11%)

Query: 73  WLISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESR 126
            +I  + +  +     + ++  +++        +         + +      + S +   
Sbjct: 5   AVIDHFLEMMSAERGASTHTLAAYQHDLQWAQDELSLHSVSLFSAQKEDLIGLLSLMHIL 64

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185
               SS  + L+++R  +++   +     +P   ++ P++     +  +++ + +     
Sbjct: 65  GFAASSQARRLSTLRQFYRFLYAEGMRVDDPSHDLDAPRQGRPLPKVISEDGVTKLLDLA 124

Query: 186 -------------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
                             + ++  E L  +GLR S+     VQ ++   +SI  +  G  
Sbjct: 125 QLEVNQADYGSKDHFRALRLQVLIEMLYATGLRISELVSLPVQAVRGKEYSILVRGKGKK 184

Query: 233 ITVELP---------DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW-FKAKATKAGV 282
             + L                           F    +    A Q      K  A +AG+
Sbjct: 185 ERIVLLSKKACQVLSQWLSLRDQRKDAASLYLFPARSETGYIARQVVARELKGLAKRAGI 244

Query: 283 NKS---AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             S    H +R   A+     GA    +    G   +   + YT 
Sbjct: 245 KSSGFSPHVLRHAFASHLLQNGADLRAVQHLLGHSDIATTQIYTH 289


>gi|237736397|ref|ZP_04566878.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Fusobacterium
           mortiferum ATCC 9817]
 gi|229421439|gb|EEO36486.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Fusobacterium
           mortiferum ATCC 9817]
          Length = 255

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 37/243 (15%), Positives = 89/243 (36%), Gaps = 9/243 (3%)

Query: 103 IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162
           I K  +   + I  +H++  +++     ++  +       +F +A++ + +  +    V+
Sbjct: 14  IEKLHNMKIKDIKARHLQEAIDNCSKGQATKKKIKFLFGQMFAYAMQNDIITKDYSEFVD 73

Query: 163 RPKRKTE-GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221
             K   E    P++ ++++       +          ++YSG R  +      +++    
Sbjct: 74  IGKASEESKREPFSNKEIELLWKHIDDIEFIDTIL-IMIYSGFRIGELLELETKNIDLVN 132

Query: 222 FSIKTQ-KT--GTIITVELPDGFMKLL-AMTPIGKETFFINNDKQKMNATQFSI-WFKAK 276
            ++    KT  G    V +      L+        +   IN   +KM    +    F   
Sbjct: 133 MTMTGGLKTEAGKNRLVPIHPKIFPLIEKRYNKDNQYLIINFKGKKMKYDNYYKEKFIPI 192

Query: 277 ATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYT-KGADRIRLGIK 334
             +  +    H  R   AT+ ++A A A  +    G ++    E  YT K  + +R  ++
Sbjct: 193 MEQLNMEHRPHDCRHTFATLLSNANANATAIKKMIGHESYATTEKIYTHKDIEELRKNVE 252

Query: 335 NSR 337
             +
Sbjct: 253 LIK 255


>gi|284990058|ref|YP_003408612.1| integrase family protein [Geodermatophilus obscurus DSM 43160]
 gi|284063303|gb|ADB74241.1| integrase family protein [Geodermatophilus obscurus DSM 43160]
          Length = 308

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 42/294 (14%), Positives = 94/294 (31%), Gaps = 20/294 (6%)

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRS 121
           R        L  ++  S      +VN++  +    +++             +I  + + +
Sbjct: 9   RAMEQEWAALRRDFAISMRAEGKSVNTQRVYLRAVNRLGAWCVDMQRGGPTRIRRQDVMA 68

Query: 122 GVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
            +     T  P +      +++  F W VR+E +  +P   +  P      +   T+E +
Sbjct: 69  FLADMSETWSPGTRNLVYRALQQFFGWMVREEEIEKSPMAGMRAPTAPETPVPVLTEEQL 128

Query: 180 QQFKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
           +Q  +        G +          +G R  +      + +     SI+    G+ I V
Sbjct: 129 RQLLATCCGKTFTGRRDNALIRLFTDTGCRLGELSGLKFEDVDLTDQSIRVLGKGSRIRV 188

Query: 236 ---------ELPDGFMKLLAMTPIGK-ETFFINNDKQKMNATQFSIWFKAKATKAGV-NK 284
                     +              + E +    D+  +  +  ++  + +  + G+ N 
Sbjct: 189 VPFGARTAQAMGRYLRVRERSAHASRPELWLAEKDRGVLGYSGVTLMLRRRGRQIGIANL 248

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338
            AH  R  +A      G +  +LM   GW++      Y       R    + R 
Sbjct: 249 HAHQFRHTAAHRWGANGGSETDLMRLMGWRSPQMLRRYAASTADERARDAHRRM 302


>gi|148264912|ref|YP_001231618.1| phage integrase family protein [Geobacter uraniireducens Rf4]
 gi|146398412|gb|ABQ27045.1| phage integrase family protein [Geobacter uraniireducens Rf4]
          Length = 279

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 37/263 (14%), Positives = 89/263 (33%), Gaps = 17/263 (6%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHT 129
            L     +       +  ++ S+      + +      D              ++ RK  
Sbjct: 3   DLRRRMMEDLQLAGYSARTQKSYLDAVRGLAKYYMRSPDLLSEDDVRGFFLHLLKVRKAA 62

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            S+   +L+ ++  F+  +++++        + +P +        ++++++         
Sbjct: 63  RSTFTIYLSGIKFFFETTLQRKW----SVFGITKPAKSKRLPVVLSRKEVRTLLKSIK-N 117

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELP----DGFMK 243
            + ++A   +   GLR S+  R  V+ + +      ++  K      V LP    +    
Sbjct: 118 PRVKMALTIIYACGLRLSEGARLKVKDIDSGRKLLWVRDGKGMKDRCVPLPKRPLELLQT 177

Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAG 301
              +   G E  F + D   +N       F+    K+ + K+A  H +R   AT   + G
Sbjct: 178 HYRLFGAGSEYLFPSGDG-HINICTIQTAFRVAVRKSDIGKTATVHTLRHSYATHLLENG 236

Query: 302 ATAHELMATYGWKTVDQAETYTK 324
             +  L    G  ++     Y  
Sbjct: 237 EDSATLKEILGHSSITTTNIYLH 259


>gi|289207303|ref|YP_003459369.1| tyrosine recombinase XerC [Thioalkalivibrio sp. K90mix]
 gi|288942934|gb|ADC70633.1| tyrosine recombinase XerC [Thioalkalivibrio sp. K90mix]
          Length = 316

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 41/291 (14%), Positives = 89/291 (30%), Gaps = 21/291 (7%)

Query: 52  TGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF-- 109
           +G  P  E           +   ++  R        + ++  +++     + R       
Sbjct: 3   SGPNPPPEAAAETTAHDADIAAFLAHLR---DVRGHSPHTIKAYQRDLAHLRRLHSGPWD 59

Query: 110 DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
             +    + I   +  + H P S  +FL++ R  F   V    +  NP   +  P+    
Sbjct: 60  QLKAADMRRIAGQLARQGHHPRSIQRFLSAARGFFAHQVEHRRMPANPAAGLRGPRAGRA 119

Query: 170 GIRPWTKEDMQQFKSFWS-----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
             R    +  QQ  +          ++ +   E L  SGLR S+     +  L  +   +
Sbjct: 120 LPRDLDVDQTQQALTPAEDLDPILAARDQAMLELLYSSGLRLSELTGLDLTDLDLDAGLV 179

Query: 225 KTQKTGTI-ITVELPDGFMKLLAM--------TPIGKETFFINNDKQKMNATQFSIWFKA 275
           +    G    +V +       L                  F++   Q++           
Sbjct: 180 RVLGKGRRERSVPVGRMARDALRNWLKCRGDWAAPDAHAVFVSRRGQRIGNRAVQRRVAE 239

Query: 276 KATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              +AG++     H +R   A+   ++      +    G   ++  + YT 
Sbjct: 240 AGRRAGLDVRLHPHRLRHAFASHLLESSGDLRAIQELLGHANLETTQIYTH 290


>gi|254459215|ref|ZP_05072637.1| phage integrase [Campylobacterales bacterium GD 1]
 gi|207084108|gb|EDZ61398.1| phage integrase [Campylobacterales bacterium GD 1]
          Length = 347

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 42/272 (15%), Positives = 89/272 (32%), Gaps = 29/272 (10%)

Query: 88  AVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLF 144
              S+  ++  +++ I    G     +I    I +      +K +  S    L    V+F
Sbjct: 73  RPLSQKDYKFIYERHIKPIFGKRIIDEIKPSEIATWQSKLLKKLSTKSLTMILAVFNVMF 132

Query: 145 KWAVRQEYVAINPCLSVERPKRKT-EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203
             A+  E +A NP   +++PK  +   I P+ ++++ +      E  + R  F    ++G
Sbjct: 133 NDALADELIARNPMSLIKKPKNISVNEILPFKQDEIFKLLGHIQE--RMRAVFAIGFFTG 190

Query: 204 LRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVE--------------LPDGFMKLLAM 247
           +R  +        +   NNI  ++  K   + ++               L       L  
Sbjct: 191 MRTGELVALKWSDIDFENNIIKVRRAKRQNVESLPKTKSSIRDIDIIDILLPYLQNHLKF 250

Query: 248 TPIGKETFFINNDKQKMNAT---QFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATA 304
                E  F +  K+          + W           ++ + +R   A++    G   
Sbjct: 251 KLDDSEYMFNSLHKRPFTCFHSISRTYWRPIFEKIDIAYRNPYQMRHTFASMMISNGEDI 310

Query: 305 HELMATYGWK----TVDQAETYTKGADRIRLG 332
             +    G      T+     Y +  D+ R  
Sbjct: 311 LWVSKMLGHTNSAITLTMYARYIENKDKKRGA 342


>gi|152993773|ref|YP_001359494.1| phage integrase family site specific recombinase [Sulfurovum sp.
           NBC37-1]
 gi|151425634|dbj|BAF73137.1| site-specific recombinase, phage integrase family [Sulfurovum sp.
           NBC37-1]
          Length = 280

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 39/209 (18%), Positives = 80/209 (38%), Gaps = 10/209 (4%)

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV--ERPKRKTEGIRPWTKEDMQQFKS 184
           K++  + ++ L+++R   K+   Q  +   P   +  E  K      +P  ++ +++  +
Sbjct: 64  KNSKKTIVKKLSAVRSFVKYLEDQCNI---PVKLIADESIKVPQSLPKPIEEQYIEEVLA 120

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
                 + +L    L   GLR S+     ++ ++     I   K   +  + L     KL
Sbjct: 121 --KANVEEKLLISMLYGLGLRISELSGLKLEDIKGEWIQIH-GKGNKVRELPLMKSLQKL 177

Query: 245 L--AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGA 302
           +   M   G + +        MNA Q          K G+  + H +R   AT   + GA
Sbjct: 178 IGVYMDQNGPKRYLFEKGNAPMNAAQLRYKLTKLFKKEGLKVTPHQLRHSFATHLLNHGA 237

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRL 331
              ++    G +T+   + YTK     ++
Sbjct: 238 RIADVSELLGHETMATTQVYTKLGSVKKM 266


>gi|58039205|ref|YP_191169.1| site-specific tyrosine recombinase XerC [Gluconobacter oxydans
           621H]
 gi|58001619|gb|AAW60513.1| Site-specific recombinase, integrase/recombinase RipX, XerC
           [Gluconobacter oxydans 621H]
          Length = 321

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 45/257 (17%), Positives = 82/257 (31%), Gaps = 31/257 (12%)

Query: 103 IRKSGDFDYRKITT--KHIRSGVESRKHTPSSAI-------QFLTSMRVLFKW-AVRQEY 152
           +   G      +     H  +  E     P+SA        + ++++R  F++  +R + 
Sbjct: 53  LADLGKLSLADLRAWLAHETARSEQPTRRPTSADSRARSRARHVSALRSFFRYLGLRHDL 112

Query: 153 VAINPC-LSVERPKRKTEGIRPWTKEDMQQFKSFWS-------EGSQPRLAFEFLLYSGL 204
              NP    +  P+ K    RP  ++  +      S          + R  F  L  +GL
Sbjct: 113 --SNPAPSLLATPRTKKRLPRPLGEDAARAAAEGISDDAETSLAALRDRALFTLLYGTGL 170

Query: 205 RCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKLL------AMTPIGKETFF 256
           R  ++    ++ L            K G    V L    M+ L        +P      F
Sbjct: 171 RIGEALSLDIRDLTNAGQNMLRVVGKGGKERLVPLLPAVMEALESWKAAHPSPTPDAPLF 230

Query: 257 INNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWK 314
                 ++N        +      G+    + H +R   AT   + GA    +    G  
Sbjct: 231 CGVRGGRLNPGVAQRAMRTWRKGEGLPDSATPHALRHSFATHLMEGGADLRTIQELMGHA 290

Query: 315 TVDQAETYTKGADRIRL 331
           ++   + YT  AD   L
Sbjct: 291 SLSTTQAYT-LADEKHL 306


>gi|153810539|ref|ZP_01963207.1| hypothetical protein RUMOBE_00920 [Ruminococcus obeum ATCC 29174]
 gi|149833718|gb|EDM88799.1| hypothetical protein RUMOBE_00920 [Ruminococcus obeum ATCC 29174]
          Length = 332

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 43/265 (16%), Positives = 93/265 (35%), Gaps = 14/265 (5%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESR 126
            + +++ +  S    + ++ +   ++    ++I    +   + ITT  IR  +    E+R
Sbjct: 54  WQKILNTFLASKRIENCSLGTLDRYKECVTKLITSL-NKRLQDITTNDIRYYLAMYQETR 112

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
           K + S        +   F W   + Y+ INP   +++ K   +  +P+T  + +  +   
Sbjct: 113 KISISYMDTIRRYLSSFFAWISDEGYININPMRRLKKIKVPQKIKKPFTPAEREHLR-CS 171

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDG---- 240
           +   +     EFL  +  R  +  R   + +    N   I  +K      V L D     
Sbjct: 172 ARCQRDIAIMEFLYSTAARIGEVVRLDRRDIDWNRNEIIIYGEKGKKERKVYLTDECAYH 231

Query: 241 FMKLLAMTPIGKETFFINNDKQK--MNATQFSIWFKAKATKAGVNKSAHGVRKFSATISA 298
             K L          F+++ +    +         +    K  ++   H  R+   T + 
Sbjct: 232 LRKYLLSRNDANPALFVSSKQPHTRLGKQAIQSMLRTLGQKTDIHAHPHKFRRTLLTDAG 291

Query: 299 DAGATAHELMATYGWKTVDQAETYT 323
           + G    E+    G +  D    Y 
Sbjct: 292 NRGIPLQEIQHYAGHEKPDTTMMYV 316


>gi|257870348|ref|ZP_05650001.1| integrase [Enterococcus gallinarum EG2]
 gi|257804512|gb|EEV33334.1| integrase [Enterococcus gallinarum EG2]
          Length = 377

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 48/317 (15%), Positives = 118/317 (37%), Gaps = 38/317 (11%)

Query: 43  FIPAYMSALTGSTPKREYINSPRKKP---TTLKWLISEYRKSAHWGSLAVNSRISFESYF 99
           F     + L  +  +   ++ P  +P    T + + + + +     ++  ++ +  E  F
Sbjct: 45  FRTQREARLAIADLELNGLSKPESEPQMIHTYEQIYNLWYEEYK-TTVKASTLLKTERVF 103

Query: 100 -DQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158
            + I+   G+   + I     ++ +         A   +    ++F +A+R + + +NP 
Sbjct: 104 KNHILPAFGNKPIQDIKPMDAQNQMNIWHKKLVRASMVMNYAGLIFDYAIRMQLINMNPT 163

Query: 159 LSVERPKRKTEGIR-----PWTKEDMQQFKSFWSEGS--QPRLAFEFLLYSGLRCSDSCR 211
             +++P RK           + K+++++F +     +  +  + F  L ++G+R  +S  
Sbjct: 164 KVIKKPVRKESVREDKDMNFYDKDELKKFMAALENNNNFRAFVYFRLLAFTGMRKGESLA 223

Query: 212 AGVQHLQNN---------------IFSIKTQKTGTIIT-VELPDG----FMKLLAMTPIG 251
                +                     I+T KT + I  + + D       +    +P G
Sbjct: 224 LKWSDIDLEKQTLYINKAVSRSATGLYIQTPKTPSSIRRISIDDKTVSILQEYKKESPDG 283

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELM 308
               F + D   ++  +   W+         +    S HG R   A++  +AGA+  ++ 
Sbjct: 284 --LVFQSEDGGILSPAKPRKWYLTAMKNLPDDFKQISIHGFRHTHASLLFEAGASIKDVQ 341

Query: 309 ATYGWKTVDQA-ETYTK 324
           +  G   +    + YT 
Sbjct: 342 SRLGHSDIQTTMDVYTH 358


>gi|167772802|ref|ZP_02444855.1| hypothetical protein ANACOL_04184 [Anaerotruncus colihominis DSM
           17241]
 gi|167665280|gb|EDS09410.1| hypothetical protein ANACOL_04184 [Anaerotruncus colihominis DSM
           17241]
          Length = 402

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 57/293 (19%), Positives = 91/293 (31%), Gaps = 38/293 (12%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH 128
           TL   +  + +     +L  N+  S+E +    I    G+    ++T   I+      KH
Sbjct: 70  TLGEWLDRWMEDYGAATLRPNTLRSYEQFIRCYIKPYLGNKIVSRVTRMDIQKLYRKLKH 129

Query: 129 TPS-----------SAIQFLTSMRVLFKWAVRQE---YVAINPCLSVERPKRKTEGIRPW 174
                         S    L    +L +     E    +A NP      PK      +  
Sbjct: 130 EGRVREHPEHGHELSDTMVLRIHAMLHRCLKDAEAAHVIARNPTDGAVVPKANHRPKQIL 189

Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--------------- 219
           TKE M+ F +        R  F   L +GLR  + C    Q                   
Sbjct: 190 TKEQMETFLAAVERNEIWRDFFYTELTTGLRRGEICGLMWQDFDEKAGTLKILRSVNVPK 249

Query: 220 -NIFSIKTQKTGT-IITVELPDGFMKLLAMTPIGKETFFIN----NDKQKMNATQFSIWF 273
                I   KT     T+ LP   ++ L        + +I       ++ +  +    W 
Sbjct: 250 AGELEIGETKTSQGRRTIRLPPSTVQRLRERKQHAVSQWIFPEPLAPEKPVRPSAAYYWM 309

Query: 274 KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTK 324
           K    +AG+     H +R   AT +  +G  A  L    G        +TYT 
Sbjct: 310 KRILREAGLPTIRFHDLRHTFATHALTSGVDAKTLSGILGHTNASFTLDTYTH 362


>gi|320532036|ref|ZP_08032926.1| site-specific tyrosine recombinase XerC [Actinomyces sp. oral taxon
           171 str. F0337]
 gi|320135749|gb|EFW27807.1| site-specific tyrosine recombinase XerC [Actinomyces sp. oral taxon
           171 str. F0337]
          Length = 307

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 43/295 (14%), Positives = 94/295 (31%), Gaps = 33/295 (11%)

Query: 69  TTLKWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSG---------DFDYRKITTKH 118
            T   L++ YR        L+ ++  ++      ++   G         D     +    
Sbjct: 3   RTRADLLASYRSYLALQRDLSGHTVRAYLVDVSDLLSFLGVGEKDTEPVDPALATLDLAD 62

Query: 119 IRSGVESRK---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
           +R  + +     H+ ++  +   S+R    WA     +A +    +  P+         T
Sbjct: 63  LRDWLAAMAASGHSRATLARRSASVRTFSSWAFEAGLLASDVAARLRAPRVDNRLPGVLT 122

Query: 176 KEDMQQFKSFWSEGSQPR--------LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227
            +   Q     ++ +  R           E L  +G+R S+     V  L ++  +++  
Sbjct: 123 TQQASQLLKTAADLASDRQVLAVRDLAIIETLYATGVRVSELIGLDVADLDHSQRTLRVL 182

Query: 228 KTGTIIT-----VELPDGFMKLLA-----MTPIGKETFFINNDKQKMNATQFSIWFKAKA 277
             G         +       + L               F+    ++++            
Sbjct: 183 GKGRKERTVPYGLPAARALEEWLRRRGEICAVDAGGALFLGARGRRIDPRAVRDVVHRLC 242

Query: 278 TKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330
           + A V +   HG+R  +AT     GA    +    G  ++   + YT   A+R+R
Sbjct: 243 SAAQVPDLGPHGLRHSTATHVLGGGADLRSVQELLGHSSLATTQRYTHVSAERLR 297


>gi|119715851|ref|YP_922816.1| phage integrase family protein [Nocardioides sp. JS614]
 gi|119536512|gb|ABL81129.1| phage integrase family protein [Nocardioides sp. JS614]
          Length = 368

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 54/287 (18%), Positives = 94/287 (32%), Gaps = 40/287 (13%)

Query: 90  NSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVE---SRKHTPSSAIQFLTSMRVLFK 145
           ++  ++ SY D+  I   G     KI    I+  V        +P+S  ++ T +  +F+
Sbjct: 82  STLAAYRSYLDRHFIPTFGRRPMGKILPSEIQRWVTTATEHGLSPASVRKYHTMLHSVFE 141

Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLR 205
            A+R   V  NPC+  E PK   +  R  T E+     +   E  Q RL  E  + +GLR
Sbjct: 142 RALRDRVVTFNPCVHTELPKVVKKKARTLTPEEYVAILTALPE--QHRLMVETAINTGLR 199

Query: 206 CSDSCRAGVQHLQNNIFSIKTQKTGTIITV------------ELPDGFMKLLAMTPIG-- 251
             +      +HL      +  ++T   +++              P          P    
Sbjct: 200 WGELIALKPRHLDLIKRQLTVEETVVEVSIKNSPTGHRMLTKPYPKDNEARTMGLPADLV 259

Query: 252 --------------KETFFINNDKQKMNATQFSIWFKAKATKA---GVNKSAHGVRKFSA 294
                          +  F   +   ++   F       A +A     +   H +R   A
Sbjct: 260 DQLADWITTRRLRLDDLLFATREGTPISRNTFRTRVWLPAIRASGVDFDVRVHDLRHAHA 319

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKG---ADRIRLGIKNSRR 338
           +     G+    +M   G   +   + Y      AD   L   N  R
Sbjct: 320 SWLLAGGSDLKSVMDRMGHAQITTTQKYLHALPDADAKNLDALNRIR 366


>gi|325924348|ref|ZP_08185892.1| site-specific recombinase XerD [Xanthomonas gardneri ATCC 19865]
 gi|325545213|gb|EGD16523.1| site-specific recombinase XerD [Xanthomonas gardneri ATCC 19865]
          Length = 358

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 52/293 (17%), Positives = 100/293 (34%), Gaps = 30/293 (10%)

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119
           YI     + TT++  +  Y            ++IS     + +I+  G +    +T + +
Sbjct: 50  YIRRAGSERTTVEAAMRRYLAEVT-PGKRPVTQISEVRRAEVLIKHLGRYSLAAVTAEIV 108

Query: 120 RSGVESR---------KHTPSSAIQF---LTSMRVLFKWAVRQ---EYVAINPCLSVERP 164
               + R         +  P S       L  +  +F  A+++     +   P L + RP
Sbjct: 109 ARFRDERLAGDLDAQGQRRPRSNNTVRLELALLGHMFTVALKEWGLGLIHS-PVLGIRRP 167

Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQ--NN 220
                  R     + Q+        S P L       L +G+R S+        +     
Sbjct: 168 PPGPGRDRRLIPHEEQRLLRAVDGHSNPMLGWIVRLALETGMRASELVGLRRSQVDLVRR 227

Query: 221 IFSIKTQKTGTIITVELPDGFMKLLAMT------PIGKETFF---INNDKQKMNATQFSI 271
           +  ++  K G+  TV L    +++L         PI  +  F      D ++ +      
Sbjct: 228 VARLQQTKNGSSRTVPLTQEAVRVLRAALANPVRPIDTDLLFYGEPGRDGKRRSYQFNPA 287

Query: 272 WFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           W K K      +   H +R  + +   +AG +  E+ A  G K++     YT 
Sbjct: 288 WMKLKRDSGMADLHFHDLRHEAISRLVEAGLSDQEVAAISGHKSMQMLRRYTH 340


>gi|170293839|gb|ACB12975.1| IntI 1 [Aquabacterium sp. PL1F5]
 gi|170293900|gb|ACB13034.1| IntI1 [Imtechium sp. PL2H3]
          Length = 337

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 43/306 (14%), Positives = 94/306 (30%), Gaps = 62/306 (20%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129
           ++ + R+S  +   ++ +  ++  +    IR  G      + +  + + +      RK +
Sbjct: 16  VLDQLRESIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75

Query: 130 PSSAIQFLTSMRVLFK--WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            S+  Q L ++   +         ++       + RP+         T +++ +   F  
Sbjct: 76  VSTHRQALAALLFFYGKVLCTDLPWLQ-----EIGRPRPSRRLPVVLTPDEVVRILGFL- 129

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
           EG   RL  + L  +G+R S+  +  V+     +    ++  K      + LP+     L
Sbjct: 130 EGEH-RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSL 188

Query: 246 AMTPIGKETFFINN---------------------------------------------D 260
                    +++ +                                              
Sbjct: 189 REQLSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVR 248

Query: 261 KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           +  M    F   FK    +AG+ K  + H +R   AT    +G     +    G   V  
Sbjct: 249 RHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVST 308

Query: 319 AETYTK 324
              YT 
Sbjct: 309 TMIYTH 314


>gi|49476286|ref|YP_034327.1| integrase /recombinase xerD [Bartonella henselae str. Houston-1]
 gi|49239094|emb|CAF28397.1| Integrase /recombinase xerD [Bartonella henselae str. Houston-1]
          Length = 312

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 38/268 (14%), Positives = 94/268 (35%), Gaps = 32/268 (11%)

Query: 89  VNSRISFESYF-----DQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL 143
            ++  +++        +        F  ++     + S + +     SS  + L+++R  
Sbjct: 22  EHTLAAYQRDLQWAQDELFSHSVSLFSAQREDLIGLLSLMHTLGFAASSQARRLSTLRQF 81

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF--------------WSEG 189
           +++   +   A +P  +++ P++     +  ++  + +                      
Sbjct: 82  YQFLYAEGLRADDPSHNIDAPRQGRPLPKVVSENVVTKLLDLAQLEVNQEDYGSKGHFRA 141

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG-----FMKL 244
            + +L  E L  +GLR S+     VQ ++   +SI  +  G    + L          + 
Sbjct: 142 LRLQLLIEMLYATGLRISELVSLPVQAVRGKDYSILVRGKGKKERMVLLSKKACQVLSQW 201

Query: 245 LAMTPIGK--ETFFINNDKQKMNATQFSIWFKAK---ATKAGVNK---SAHGVRKFSATI 296
           L++   GK  E+ ++   + +       +  +     A +AG+     S H +R   A+ 
Sbjct: 202 LSLRDQGKYAESLYLFPARSETGYIARQVVARDLKSLARRAGIKSGGFSPHVLRHAFASH 261

Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324
               GA    +    G   +   + YT 
Sbjct: 262 LLQNGADLRAVQHLLGHSDIATTQIYTH 289


>gi|331086028|ref|ZP_08335111.1| hypothetical protein HMPREF0987_01414 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330406951|gb|EGG86456.1| hypothetical protein HMPREF0987_01414 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 376

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 43/283 (15%), Positives = 85/283 (30%), Gaps = 38/283 (13%)

Query: 85  GSLAVNSRISF-ESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL 143
            ++  N+  ++ E Y   I    G      +   H +                  +   L
Sbjct: 81  KTVRPNTVRNYTERYIRNIKPLIGKMSLSDVKPLHCQKIFYDMADQGYRTSTIYQARITL 140

Query: 144 FK---WAVRQEYVAINPCLS-VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199
           +    +A   E +  NPC   V+    K    +   + D+Q+    ++EG      + F+
Sbjct: 141 YNMLEYAKENEVLRTNPCKRSVKSDMGKPSEKKVALERDVQKIFLRYAEGQSYENQYRFI 200

Query: 200 LYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ-----------------KTGTIITVELPDG 240
           L +GLR  +      + +   +    I+                   K+G   T+ L + 
Sbjct: 201 LQTGLRTGELVGLKWEDIDFESKTIQIRRSMEYRYSVKEWRIGEPKSKSGYR-TIPLTEE 259

Query: 241 FMKLLAMTPIGK-----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHG 288
            + +L                  E  F+      +  + +         KA + + S H 
Sbjct: 260 AVTILNKQKEKNKWISEISKEWEEFVFLCRKGTPVKNSTYDTALFKICDKAQIPRFSMHI 319

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIR 330
           +R   AT   +AG     L    G   +      Y    +  +
Sbjct: 320 LRHTFATRCIEAGMKPKTLQMLLGHSNIGITMNLYVHTTEEEK 362


>gi|229521999|ref|ZP_04411416.1| site-specific recombinase XerD [Vibrio cholerae TM 11079-80]
 gi|229340924|gb|EEO05929.1| site-specific recombinase XerD [Vibrio cholerae TM 11079-80]
          Length = 348

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 48/319 (15%), Positives = 108/319 (33%), Gaps = 52/319 (16%)

Query: 73  WLISEYRK-SAHWGSLAVNSRISFESYFDQIIR-KSGDFDYRKITT--KHIRSGVESRKH 128
            LI ++        + +  +   +     Q+ +  SG+F   ++ T  +     +    +
Sbjct: 18  DLIDQFLTWKGENENCSARTVKKYRGLLSQLDKFLSGNFAAAELKTLEQFSGGWLHRAGY 77

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP--WTKEDMQQFKSFW 186
           + +S    + ++R  + +  ++  VA NP   +  P+      R       +   F+   
Sbjct: 78  SAASRKVAVAAIRGFYSFLAKRRIVARNPAADLVYPRMGRRLPRFMGLKSAEALLFQPNL 137

Query: 187 SE--GSQPRLAFEFLLYSGLRCSDSCRAG------VQHLQNNIFSIKTQKTGTI---ITV 235
           +   G +       L+  G R +  C          Q+ +    +I+T + G     + V
Sbjct: 138 TSLSGVRDSAMLALLIGCGFRVAGLCGLNESQLIWYQYGEVERLAIRTLEKGERERLVPV 197

Query: 236 EL-----------PDGFMKLLAMTPIGKETFFINNDKQK------------MNATQFSIW 272
            L                 +  +   G +  F+N   +             ++       
Sbjct: 198 PLEAMLLVQAYLGHHDLKHVDRVLDNGDQVLFVNLRNRHVPEWEHRGELRRLSTRAVDRM 257

Query: 273 FKAKATKAGVNKS---AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            K  A  AGV +    AH +R    T  A++ ++  ++ A  G      +E Y+      
Sbjct: 258 IKKYAIAAGVPEDQSHAHALRHLFGTELAESDSSTLQIQALMGHADPKTSEIYSH----- 312

Query: 330 RLGIKNSRRISSVVDSDDP 348
                + R+++ V+D  +P
Sbjct: 313 ----ISMRKMTHVLDKGNP 327


>gi|193214435|ref|YP_001995634.1| integrase family protein [Chloroherpeton thalassium ATCC 35110]
 gi|193087912|gb|ACF13187.1| integrase family protein [Chloroherpeton thalassium ATCC 35110]
          Length = 336

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 44/286 (15%), Positives = 83/286 (29%), Gaps = 51/286 (17%)

Query: 90  NSRISFESYFDQIIRKSG-----DFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMR 141
             R     + + + ++       D     + T  IR  +       +   S  + L S++
Sbjct: 34  AYRKDLSQFLEFLKKEFELPSSQDISLADVETSTIRLFLGELLDAGYQSKSIGRKLASVK 93

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK-------EDM-----QQF------K 183
             FK+ V   ++  +P  +V  PK K        +       +++     + F      K
Sbjct: 94  SFFKFLVYINHLPASPAANVTTPKAKKTLPTFLNETQTQTLFDEILDHFNEAFYHDNRAK 153

Query: 184 SFWSEGS--------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIIT 234
                 +        + R   E     GLR ++     +  L      +K   K      
Sbjct: 154 KHEKVNTLEWDFRYNRDRAILEMFYSCGLRLAELIGLNIMELDFQNGFVKVLGKGRKQRI 213

Query: 235 VELPDGFMKLL--------------AMTPIGKETFFINNDKQKMNATQFSIWFKAK--AT 278
           + L +   K L                  + +E  F+    +++         K      
Sbjct: 214 IPLGESAQKTLKNYLEIKKKFFEMKRSNVLEREAVFVTEKGKRVYPVLVQRLVKKYLSPV 273

Query: 279 KAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
                KS H +R   AT   + GA    +    G   +   E YT 
Sbjct: 274 TEQKKKSPHVLRHTFATHLLNNGADLRSVSEMLGHSNLSTTEIYTH 319


>gi|300853246|ref|YP_003778230.1| phage integrase-like protein [Clostridium ljungdahlii DSM 13528]
 gi|300433361|gb|ADK13128.1| phage integrase related protein [Clostridium ljungdahlii DSM 13528]
          Length = 391

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 48/371 (12%), Positives = 106/371 (28%), Gaps = 71/371 (19%)

Query: 17  RHGKIIYYFRKGHGR-----RIRL-----PYPHESTFIPAYMSALTGSTPKREYINSPRK 66
           R+GK  Y  R   GR     RIR              +  Y + L               
Sbjct: 9   RNGKKYYRLRVDLGRDSDGNRIRKTFYGKSKKDAEDKLQEYKNGLNSGLSND-------Y 61

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYR-----KITTKHIRS 121
              TL  +   +       ++  ++   +E  +   I+ S  +  +      +  +   +
Sbjct: 62  DKLTLGNVCKLWLFEKIKNTVKPSTFERYEGVYRIYIKSSPLYPVKLKELKSLDIQRYYN 121

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS--VERPK------RKTEGIRP 173
            + +   + S        ++  F + + + Y+  N C+   +  P+       K + I  
Sbjct: 122 DLFNSGKSTSIIKNLDKLLKSFFNYCIDEGYIVRNYCIGKSITIPESNSVNENKKDDITV 181

Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN------------- 220
           +T ++  QF +   +  + +  F   L +GLR  +        +                
Sbjct: 182 FTVDEQNQFINAVQDH-RLKALFLLDLGTGLREGEILGLKWSDIDFENCTLSVKRAIKGV 240

Query: 221 -----------IFSIKTQKTGTIITVELPDGFMKLL------------AMTP--IGKETF 255
                      +     +   +I T+  P+  + +L               P     +  
Sbjct: 241 TLIEGTKRNYHLIEQTPKTKNSIRTIPFPENLIPILEKHQLQQKEEKIKAGPAYTKNDYV 300

Query: 256 FINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWK 314
           F       ++       ++       +  K  H +R   AT   +       +    G  
Sbjct: 301 FCTELGLPIDPRNLRRSYERVLKNNNIPYKKFHSLRHTFATRLFENNVPLKTVQMLLGHS 360

Query: 315 TVD-QAETYTK 324
            ++  A  YT 
Sbjct: 361 NINITANIYTH 371


>gi|291529887|emb|CBK95472.1| Site-specific recombinase XerD [Eubacterium siraeum 70/3]
          Length = 327

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 38/264 (14%), Positives = 89/264 (33%), Gaps = 14/264 (5%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRK 127
           + L+  +  +      +  +   + +    ++   G    R I T  +RS +    E  +
Sbjct: 50  QNLVELFLSAKRIEGCSEKTLKYYNATIQAMLTCVGKG-VRHIVTDDVRSYLTEYQEKNQ 108

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            +  +       +   F W   ++Y+  +P   + + K  T     +T E ++  +   +
Sbjct: 109 SSKVTIDNIRRILSSFFSWLEDEDYILKSPVRRIHKVKTGTNIKETYTDEALELMRDSCT 168

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG-----FM 242
           E  +     + L  +G+R  +        +  N         G    +   D        
Sbjct: 169 E-LRDLAIIDMLASTGMRVGEMVLLNRADINFNERECVVFGKGDKERIVYFDARTKIHLQ 227

Query: 243 KLLAMTPIGKETFFINNDK--QKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISAD 299
             L          F++  K  +++  +   +  +    + G++K   H  R+  AT++ D
Sbjct: 228 NYLNSRRDENPALFVSLQKPHKRLQISGIEVRLREYGKRLGLSKVHPHKFRRTLATMAID 287

Query: 300 AGATAHELMATYGWKTVDQAETYT 323
            G    +L    G + +D    Y 
Sbjct: 288 KGMPIEQLQQLLGHRRIDTTLQYA 311


>gi|15925018|ref|NP_372552.1| integrase [Staphylococcus aureus subsp. aureus Mu50]
 gi|15927603|ref|NP_375136.1| hypothetical protein SA1835 [Staphylococcus aureus subsp. aureus
           N315]
 gi|156980344|ref|YP_001442603.1| hypothetical protein SAHV_2013 [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|255006817|ref|ZP_05145418.2| hypothetical protein SauraM_10125 [Staphylococcus aureus subsp.
           aureus Mu50-omega]
 gi|13701822|dbj|BAB43115.1| int [Staphylococcus aureus subsp. aureus N315]
 gi|14247801|dbj|BAB58190.1| similar to integrase [Staphylococcus aureus subsp. aureus Mu50]
 gi|156722479|dbj|BAF78896.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3]
          Length = 390

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 64/385 (16%), Positives = 129/385 (33%), Gaps = 62/385 (16%)

Query: 17  RHGKIIYYFRK---GHGRRIRLPYPHESTF----IPAYMSALTGSTPKREYINSPRKKPT 69
           + G   + +R          +  Y   S F       + + +     +     +P    +
Sbjct: 6   KRGNT-WRYRISLGKDAETGKYKYISNSGFKRKSDAKHHAEMVERQLRNGDYIAP--STS 62

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           T K +  ++  S +   + V+S  + E      I +  +   + I     +  V      
Sbjct: 63  TFKQVADDWI-SQYANEVKVSSVRAREKAIHHAIERFKNKPIQTIKKHDYQRFVNDISIQ 121

Query: 130 PSSA--IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK--------TEGIRP-WTKED 178
            S       +TS  ++FK+A   + + I P   ++RPK+K        TE  +    K++
Sbjct: 122 YSKNYVDSIVTSTNMIFKYAYDMKLIRILPSEGIKRPKKKVSVEELEDTEIHKKFLEKDE 181

Query: 179 MQQFKSFWSEGSQPRLAFEF---LLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ------ 227
           + QF         P+ +FE    L Y+G+R  +        +   NN  +I         
Sbjct: 182 LFQFLEIAKNHHSPQNSFEVFYTLAYTGMRAGELLALKWSDIDFENNTINITKTYYNPNN 241

Query: 228 ----------KTGTII-TVELPDGFMKLLAMTP------------IGKETFFINNDKQKM 264
                     KT + I  + +    +KLL                +     F + +   +
Sbjct: 242 NKKQYQILTPKTESSIGKISVDPHVIKLLKNYKVDVQDTWKNELYVDNNFVFTDVNGYPL 301

Query: 265 NATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE- 320
              +  +W KA   K  +     S H  R     +  +AG    E+      K ++    
Sbjct: 302 VIKKLQLWIKAILKKTNITNKQISTHSFRHTHCALLIEAGVHIKEIQERLRHKDINTTMN 361

Query: 321 TYTKGADRIRLGIKNSRRISSVVDS 345
            Y K  +  +     S++ S ++++
Sbjct: 362 IYAKITNSYKK--DASQKFSKLMEN 384


>gi|220905619|ref|YP_002480931.1| integrase family protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219869918|gb|ACL50253.1| integrase family protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 398

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 57/370 (15%), Positives = 119/370 (32%), Gaps = 36/370 (9%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSA-----------LT 52
             + P        +  KI Y   +  G+++      ES  +    +A           L 
Sbjct: 24  KSKTPSGEAVPTEKADKIYYIMYRLDGKKVEEKVGRESERMTVAKAAKIREQRINGVTLP 83

Query: 53  GSTPKREYINSPRKKPT--TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD 110
            +  +R+ +   + +    T+  L   Y+ +       V     F++Y     + S +  
Sbjct: 84  NTERRRQRLEKAQAEAGRWTIGKLWKAYKDNNPGLKGIVTDENRFKNYLSGFTKLSPEEL 143

Query: 111 YRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA-INPCLS-VERPKRKT 168
             ++    +R  +        +    L  +R +  + V++   A  +P     E PK   
Sbjct: 144 TTQM-VDTLRLKLLKSGKKAGTTKNVLELLRRIINFGVKKGLCAWQDPSRLHFEMPKLNN 202

Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSI 224
                 TKE+  +F          +         Y+G+R ++       H+   +   +I
Sbjct: 203 VKTEMLTKEERARFIEAAKAAPNRKAGQLMLMAYYTGMRRNELFGLKWAHIDFEHGFINI 262

Query: 225 KTQK-----TGTIITVELPDGFMKLLA-MTPIGKETFFINNDKQKMNATQFSIWFKAKAT 278
             +K     +     + L     +LLA +   G E  F   D +       +    A   
Sbjct: 263 VGEKQEGAKSNRDERIPLSPPVRELLAEVGDNGSEYVFPGKDGRSRMIDM-NKQVNAIKA 321

Query: 279 KAGVNKSA---HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335
            AG+ K     HG+R   A+++   G     +      K     + Y        L  + 
Sbjct: 322 AAGLPKDFRPLHGLRHTFASVAVSNGVPLSHVQKLLTHKDPTLTQRYAH------LEDEA 375

Query: 336 SRRISSVVDS 345
            +  +++V +
Sbjct: 376 LKNAANMVGN 385


>gi|162148139|ref|YP_001602600.1| site-specific tyrosine recombinase XerC [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161786716|emb|CAP56299.1| Tyrosine recombinase xerC [Gluconacetobacter diazotrophicus PAl 5]
          Length = 324

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 50/309 (16%), Positives = 99/309 (32%), Gaps = 49/309 (15%)

Query: 70  TLKWLISEYRK-SAHWGSLAVNSRISFESYFDQIIRKSGD--------FDYRKITTKHIR 120
           T   L   +          +  +  ++    D+ +   G             +++   +R
Sbjct: 2   TGADLRDAFLDWMRDERRASPLTIAAYRGDLDRFLDFIGAHVGGTVDLAVLDRLSLADLR 61

Query: 121 SGVE--------------SRKHTP----SSAIQFLTSMRVLFKWAVRQEYVAINPCLSV- 161
           + +                R  TP     +  + +++MR  +++  R+ +   NP   + 
Sbjct: 62  AWLAFEHAQGHALAQRDRGRSSTPDRAARTRARRVSAMRSFYRYLARR-HGVTNPAPGLL 120

Query: 162 ERPKRKTEGIRPWTKEDMQQF------KSFWSEGSQPRLAFEFLLY-SGLRCSDSCRAGV 214
             P+ K+   RP ++             +    G     A   LLY  GLR S++    V
Sbjct: 121 AAPRTKSPLPRPLSEAQALDVPDGVGDLAVTPLGQARDAALFLLLYGCGLRISEALGLDV 180

Query: 215 QHLQ----NNIFSIKTQKTGTIITVELPDGFMKLL------AMTPIGKETFFINNDKQKM 264
           + L          +   K G    V +     ++L         P+     F      ++
Sbjct: 181 RDLDHALSAGGTLLVRGKGGRERLVPILPAVARVLTDWRARHPAPLPDAPLFPGVRGGRL 240

Query: 265 NATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
                    +A    AG+  + + H +R   AT   + GA    +    G  ++   + Y
Sbjct: 241 QPAVAQRAMRAWRDMAGLPDHATPHALRHSFATHLMEGGADLRTIQELLGHASLSTTQRY 300

Query: 323 TKGADRIRL 331
           T  AD  RL
Sbjct: 301 T-LADEARL 308


>gi|331091113|ref|ZP_08339955.1| hypothetical protein HMPREF9477_00598 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330405335|gb|EGG84871.1| hypothetical protein HMPREF9477_00598 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 353

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 47/330 (14%), Positives = 103/330 (31%), Gaps = 41/330 (12%)

Query: 41  STFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD 100
             F+  Y  A+  +T  +  I+         K+L+     +  + S  +       S  +
Sbjct: 28  PGFVRDYFRAIEPTTSVKTRISYAYDIRIFFKFLLE---NNPVYKSYKMTDFQV--SDLE 82

Query: 101 QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
           +I     +     +          +      +  + ++++R  + +  + + +  NP L 
Sbjct: 83  RIAPVDIEEYQEYLKVYQNEDKQITNAEKGLA--RKMSALRSFYNYYYKHQMIEKNPSLF 140

Query: 161 VERPKRKTEGIRPWTKEDMQQFKS----------------FWSEGSQPRLAFEFLLYSGL 204
           V+ PK   + I     +++                     +    ++       LL +G+
Sbjct: 141 VDMPKIHDKAIVRLDTDEVALLLEYVENCGNQLTGQKKVYYEKNKTRDLAILTLLLGTGI 200

Query: 205 RCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLL-----------AMTPIG 251
           R S+     +  +   NN   +  +K G  + V       K L              P  
Sbjct: 201 RVSECVGLDIPDIDFKNNGIKVM-RKGGNEMVVYFGPEVRKALIDYLETTRNTITPLPEH 259

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMA 309
           +   F++  K++M         K  A +   NK  + H +R    T         + +  
Sbjct: 260 ENALFLSTQKKRMGVQAVENMVKKYAREVTPNKKITPHKLRSTYGTSLYKETGDIYLVAD 319

Query: 310 TYGWKTVDQA-ETYTKGAD-RIRLGIKNSR 337
             G + V+   + Y    D R R      +
Sbjct: 320 VLGHRDVNTTKKHYAAIDDARRRQAASAVK 349


>gi|299135445|ref|ZP_07028635.1| tyrosine recombinase XerC [Afipia sp. 1NLS2]
 gi|298589853|gb|EFI50058.1| tyrosine recombinase XerC [Afipia sp. 1NLS2]
          Length = 327

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 40/281 (14%), Positives = 94/281 (33%), Gaps = 33/281 (11%)

Query: 85  GSLAVNSRISFESYFDQ----IIRKSGD----FDYRKITTKHIRSGVESRKH---TPSSA 133
             L+  +  ++E    Q    +    G       +  I    +R+ + +R+       S 
Sbjct: 39  RRLSPKTLEAYERDLRQCLMFLAEHWGKPASLKAFAAIEATDVRAFMAARRADDIGGRSL 98

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW--------TKEDMQQFKSF 185
           ++ L  +R   ++  R+    +    ++  PK      +P         T+ D++  +  
Sbjct: 99  MRALAGLRSFGRFLEREGKGKVGALSAIRAPKISKTLPKPLAVSAARNLTEADIRAGEDR 158

Query: 186 WS-EGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVEL--- 237
                ++       L  SGLR S++     + +    + ++ ++  +   T +   L   
Sbjct: 159 PPWIWARDAAVMALLYGSGLRISEALGLNRRDIPEPGRGDVITVTGKGNKTRMVPVLQGV 218

Query: 238 PDGFMKLLAMTP---IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKF 292
            +     +A  P     ++  F+      ++     +  +      G+    + H +R  
Sbjct: 219 LEAVQDYIAQCPYPLAPEKPVFVGARGGPLSPRIIQLTMERLRGALGLPDSATPHALRHS 278

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
            AT     G     +    G  ++   + YT G D  RL  
Sbjct: 279 FATHLLSRGGDLRAIQELLGHASLSTTQIYT-GIDAERLMD 318


>gi|150005337|ref|YP_001300081.1| integrase protein [Bacteroides vulgatus ATCC 8482]
 gi|149933761|gb|ABR40459.1| integrase protein [Bacteroides vulgatus ATCC 8482]
          Length = 407

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 48/288 (16%), Positives = 99/288 (34%), Gaps = 37/288 (12%)

Query: 78  YRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVESRKHTPSSA 133
           + KSA        +++ +  S    +       D++ +T    +     +  + +  ++ 
Sbjct: 112 FAKSAIDNSDKKQSTKDNLHSTLAVLNDFRSGLDFKDLTYTFLRDFEQYLREKGNAVNTI 171

Query: 134 IQFLTSMRVLFKWAVRQEYVAIN--PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
            + +  +R L   A+ Q Y+  +  P    +  K++       T +++++ ++   E   
Sbjct: 172 AKHMRQLRTLVNEAINQGYMHADAYPFRKYK-IKQEKGRHEFLTPDELKKLETVEVEEKS 230

Query: 192 PR---LAFEFLLYSGLRCSDSCRAGVQHLQN----NIFSIKTQKTGTIITVELP----DG 240
            R    AF F  Y+GLR SD C+   ++            K+ KTG  I + L       
Sbjct: 231 MRHVLDAFLFCCYTGLRYSDFCQLTPENFIRVNGKRWLYFKSVKTGVEIRLPLHLLFESR 290

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISA 298
            + +L   P       +         ++ +   +      G+ K    H  R   AT+  
Sbjct: 291 ALGILDRYPDIGSLVSL------PCNSEVNKQLRKLTGLCGIKKRITYHVSRHTCATLLV 344

Query: 299 DAGATAHELMATYGWKTVDQAETYT-----------KGADRIRLGIKN 335
             G     +    G  +V   + Y+           K   R R  +K 
Sbjct: 345 HQGVAITTVQKLLGHTSVKTTQIYSEVLSSTIVRDLKNVQRKRKKVKM 392


>gi|291522918|emb|CBK81211.1| Site-specific recombinase XerD [Coprococcus catus GD/7]
          Length = 282

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 42/274 (15%), Positives = 100/274 (36%), Gaps = 18/274 (6%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK---H 128
           K +    R  A   +L   +   + S     +R  G  +   +T +   S + +++    
Sbjct: 3   KDIFESIRNEAEKRNLRERTIQLYCSDVSYFLRWIG-KNVSDLTLEDAESFLTAKRLEGR 61

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           +P +   + ++++ L+K  ++  +       +V   KR+       +++++         
Sbjct: 62  SPETHNHYRSAIKFLYKKVLKTVWDDD----TVPAMKRERNLPAVLSRDEINAIIDATP- 116

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL------PDGFM 242
             + +     +  SGLR S+        +     +I  ++T   I           D   
Sbjct: 117 NLKHKAIIATMYSSGLRVSEVVHLHYDDISRTNMTIHVRETKGRIDRYTILSQKNLDLLT 176

Query: 243 KLLAMTPIGKETFFINND-KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
           +        K+  F ++     ++    + +FK  A  AG+N+  S+H  R   A+   +
Sbjct: 177 EYWYKCGRPKDILFPSSWSGGYLDIASVNQFFKKSAKLAGINRHVSSHACRHSFASHLFE 236

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           +G     + +  G       + Y   +++  LGI
Sbjct: 237 SGTDIKYIQSLLGHVDPRSTDVYLHVSNKTLLGI 270


>gi|237736957|ref|ZP_04567438.1| integrase/recombinase [Fusobacterium mortiferum ATCC 9817]
 gi|229420819|gb|EEO35866.1| integrase/recombinase [Fusobacterium mortiferum ATCC 9817]
          Length = 292

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 44/272 (16%), Positives = 92/272 (33%), Gaps = 24/272 (8%)

Query: 75  ISEYRKSAHWGS-LAVNSRISFES-------YFDQIIRKSGDFDYRKITTKHIRSGVESR 126
           I ++     +G+  + N+  S +        Y ++I +         +  +     ++  
Sbjct: 13  IKDFLYFEEFGNNKSPNTIKSMKKDLFQLAEYLNEIEKVDNCMAIDSVMIRGFIINLQEN 72

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             T  +  + L+S+R  FK+ VR++ +  +P   +  P   T+     T E++ + +   
Sbjct: 73  GITKRTINRKLSSLRSFFKYLVREKRINQSPVEVIASPSFYTQKPDILTLEEINKLREVI 132

Query: 187 SE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
           S     G + RL  E L  SG+   +    G      +   +      +   V   +   
Sbjct: 133 SLKNANGLRDRLILELLYSSGITSVEMLGVGEGVFDLDKRELYVSNGKSRRVVFFSERTR 192

Query: 243 KLLAMTPIGK----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290
           +        K          +  F+N    +++           A KAG+ +  S +  R
Sbjct: 193 EFFKRYIKAKKEKYKEKYNPDILFVNGSATRLSDRSLRRIIDRYAVKAGIEREISPYSFR 252

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETY 322
              A      G     L    G  T++  + Y
Sbjct: 253 HTFAVHMLSHGMDILYLKELMGHVTLESTKVY 284


>gi|218534740|ref|YP_002424501.1| integrase family protein [Methylobacterium chloromethanicum CM4]
 gi|218525889|gb|ACK86472.1| integrase family protein [Methylobacterium chloromethanicum CM4]
          Length = 291

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 46/246 (18%), Positives = 87/246 (35%), Gaps = 9/246 (3%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWA 147
           + N+R ++E    + +   G      +    ++  +  R  + ++      +++ LF +A
Sbjct: 35  SPNTRRNYEREARRFLAHVG-RPLAAVRMGDLQEYIAGRPGSSATTALSAAALKSLFAFA 93

Query: 148 VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCS 207
               Y+  N   +V+ P  K         E             + R+    L   GLR S
Sbjct: 94  QEAGYLRFNVGAAVKVPPIKNTLAERIMPEGDALLMIRQEPALRNRVLLTVLYGGGLRIS 153

Query: 208 DSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGF----MKLLAMTPIGKETFFINNDK 261
           + C    + L  ++          G    V L        ++ L    +  +  F +   
Sbjct: 154 EVCSLRWRDLAPRDEAGQATVFGKGGKTRVVLLSAATWKVLQALREEALADDPVFRSRKG 213

Query: 262 QKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
             ++ +      KA A +AG+    SAH +R   A+ + D GA  H + AT G  +V   
Sbjct: 214 GALDPSAVHRIVKAAAARAGLPADVSAHWLRHAHASHALDRGAPIHLVQATLGHASVATT 273

Query: 320 ETYTKG 325
             Y   
Sbjct: 274 GRYLHA 279


>gi|254303771|ref|ZP_04971129.1| possible integrase [Fusobacterium nucleatum subsp. polymorphum ATCC
           10953]
 gi|148323963|gb|EDK89213.1| possible integrase [Fusobacterium nucleatum subsp. polymorphum ATCC
           10953]
          Length = 353

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 46/286 (16%), Positives = 95/286 (33%), Gaps = 26/286 (9%)

Query: 80  KSAHWGSL--AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQ 135
           +   +  L     + ++  +  + I     +     IT   I +      RK+  SS   
Sbjct: 68  QHLEFKKLRIKELTYMNMSNILNSI-TYFDNLLISDITPIQISNFQNDLLRKYKGSSIRT 126

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI-RPWTKEDMQQFKSFWSEGSQPRL 194
               +++LF W VR + +  NP   V+R K +T+      T ++  Q     +     +L
Sbjct: 127 INAYVKMLFTWCVRYKNLTSNPFDMVDRLKLETKKRMDIITVDEFNQIVEQVN-NPDMKL 185

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQ----------------NNIFSIKTQKTGTIITVELP 238
            F+ L ++GLR  ++    +  +                         +  G+I  +++ 
Sbjct: 186 MFKLLFWTGLRIGEARALKIDDIDFNNKTISVTKSYTNLSGKSIITTPKTKGSIRVIKID 245

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK-AGVNKSAHGVRKFSATIS 297
           D  +  +       +    +N   + N   +   FK    K  G +   H +R   A+  
Sbjct: 246 DVLLSEIKDYIDKAKYILDDNFIFRFNKASYRYNFKNATIKVLGRDLRVHDLRHSHASFL 305

Query: 298 ADAGATAHELMATYGWKTVDQA-ETYTK-GADRIRLGIKNSRRISS 341
            + G     +    G          Y+    DR    I    ++ +
Sbjct: 306 INNGVDILLISKRLGHSNTAMTLNVYSHLYPDRENEAINLINKLKA 351


>gi|49146367|ref|YP_025475.1| putative site-specific recombinase [Caedibacter taeniospiralis]
 gi|40458335|gb|AAR87083.1| putative site-specific recombinase [Caedibacter taeniospiralis]
          Length = 282

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 32/272 (11%), Positives = 81/272 (29%), Gaps = 22/272 (8%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--------FDYRKITTKHIRSGVE 124
             I  + K       +  + I++    +   +   D                +  +S + 
Sbjct: 4   DAIERFIKYLESTEKSPATLINYRRDLNAFAKWFEDNNGDAFLPAKITTTDLRQYKSMLI 63

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
                P +  + + S+R    W      +  N    + +  ++ +    W  ++ Q    
Sbjct: 64  DHPFKPKTINRRIGSLRSFINWLWDIGEI--NNKFPLPKLVKENQPTPMWLDKNQQHALM 121

Query: 185 FWSE---GSQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVEL 237
              E     +        + +G+R  +        +    +  I  I+  K      + L
Sbjct: 122 RHLERYGNERDASIISIFMNTGMRVQEFVNLKWIDVTLSDKKGIIMIRHSKANKYREIPL 181

Query: 238 PDGFM----KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKF 292
                    KL   T  G + + +   +  +      +  K +     ++  S H +R  
Sbjct: 182 NKDARYAFVKLGFKTHAGSDEYVLQGQRGNITTRGIQMMIKRRVAYTDLDYLSPHMLRHT 241

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324
                 +AG +  ++    G +T++  + Y  
Sbjct: 242 FCKNLVNAGVSLEKVAVLAGHETLETTKIYCH 273


>gi|146338350|ref|YP_001203398.1| putative phage-like integrase [Bradyrhizobium sp. ORS278]
 gi|146191156|emb|CAL75161.1| putative phage-like integrase [Bradyrhizobium sp. ORS278]
          Length = 424

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 63/344 (18%), Positives = 118/344 (34%), Gaps = 41/344 (11%)

Query: 15  RTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMS---------ALTGSTPKREYINS 63
           R + G  +Y   FR    +R     PH S + P                G  P  E    
Sbjct: 35  RRQRGTPVYVLKFRASGRQRFFTIGPHGSPWTPEKARKEAKRLLGLVAQGKDPAAERELL 94

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
             +   T + +  EY K+A        +    E Y   + +        +I+ +H+ + V
Sbjct: 95  TLQTADTFRKVADEYLKTAK-QKQRPRTYSEIERYLLGVWKPLHQLPMSQISRRHVAARV 153

Query: 124 ESRK--HTPSSAIQFLTSMRVLFKWAVRQEY-VAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                 +   +A +  +++  +F WA+R+   +  NP L   RP       R  T  ++ 
Sbjct: 154 GDIATNNGAVTAARARSALSAMFNWAIREGLEIPANPVLGTNRPAAPRSRERVLTDGELA 213

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIITVE 236
           +  +   +    R   + L+ +  R  +        +  +           K      + 
Sbjct: 214 EIWTGLEDDDYGR-IVKLLILTAQRRDEVGGMRWAEIDGSRCLWTIPGSRTKNHREHALP 272

Query: 237 LPDGFMKLLAMTPIGKETFFINN-DKQKMNATQFSIWFK-----------AKATKAGVNK 284
           L +  M LL    +G+E  F +   ++      FS W K            +  +AGV +
Sbjct: 273 LTEAAMLLLPAASVGREFVFGDGPRRKGDAPRGFSGWSKSKAALDEGLLAKRKERAGVGE 332

Query: 285 S--------AHGVRKFSATISADA-GATAHELMATYGWKTVDQA 319
           +         H +R+ +AT+ AD  G   H + A     +  +A
Sbjct: 333 TVNPMPEWWLHDLRRTAATVMADQLGVLPHIIEAVLNHVSGHRA 376


>gi|153815634|ref|ZP_01968302.1| hypothetical protein RUMTOR_01870 [Ruminococcus torques ATCC 27756]
 gi|317502423|ref|ZP_07960587.1| phage integrase family Site-specific recombinase [Lachnospiraceae
           bacterium 8_1_57FAA]
 gi|145847065|gb|EDK23983.1| hypothetical protein RUMTOR_01870 [Ruminococcus torques ATCC 27756]
 gi|316896161|gb|EFV18268.1| phage integrase family Site-specific recombinase [Lachnospiraceae
           bacterium 8_1_57FAA]
          Length = 322

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 36/248 (14%), Positives = 84/248 (33%), Gaps = 14/248 (5%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS----SAIQFLTSMRVL 143
           +  +   +    + +  K  +   R+ITT+ IR+ +   +        +      ++   
Sbjct: 61  SERTIQYYRVTVEHLFSKM-NQSVRRITTEEIRTYLSDYQKINRCSNVTIDNIRRNISSF 119

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203
           F W   ++Y+  +P   + + K KT      T E +++ +   +E  +     + L  +G
Sbjct: 120 FSWLEEEDYILKSPMKRIHKIKTKTVVKSVITDEGIEKLRDNCAE-IRDLAIIDLLYSTG 178

Query: 204 LRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDG----FMKLLAMTPIGKETFFIN 258
           +R  +     ++ +       I   K      V           + +       E  F+ 
Sbjct: 179 IRVGELVNLNIEDIDLEGRECIVYGKGDKERRVYFDAKAKVHLKEYIEKRKDNNEALFVT 238

Query: 259 NDKQK--MNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKT 315
            D     +  +   I  +    +  +++   H  R+  AT + D G    ++    G   
Sbjct: 239 LDAPHDRLKISGVEIRLRQLGRQLKLDRIHPHKFRRTMATRAIDKGMPIEQVQKILGHSQ 298

Query: 316 VDQAETYT 323
           +D    Y 
Sbjct: 299 IDTTMQYA 306


>gi|163761399|ref|ZP_02168473.1| site-specific tyrosine recombinase XerC [Hoeflea phototrophica
           DFL-43]
 gi|162281394|gb|EDQ31691.1| site-specific tyrosine recombinase XerC [Hoeflea phototrophica
           DFL-43]
          Length = 316

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 38/267 (14%), Positives = 77/267 (28%), Gaps = 28/267 (10%)

Query: 85  GSLAVNSRISFESYFDQII-----------RKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
             LA  +  ++E    Q +           + S   D R +  +   +          + 
Sbjct: 32  RRLADKTAEAYERDLRQFLGFLTLHLGGPPKISDLADLRPLDLRAFMAERRREGAGARTL 91

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ-------QFKSFW 186
            + L  +R   +   R+         +   PK+     +P +  D +       Q     
Sbjct: 92  GRGLAGIRSFLRHLERKGLANAAGATATRAPKQPKSLPKPLSARDARRVVDADLQLSDEP 151

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPD------ 239
              ++       L   GLR S++       +  +  S++ T K G    V L        
Sbjct: 152 WIAARDAAVLTLLYGCGLRISEALGLTRNDIPRDGESLRITGKGGKTRIVPLLPIARSAI 211

Query: 240 -GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATI 296
             +++L    P      F       +         +A  +   +    + H +R   AT 
Sbjct: 212 SDYLELSPFRPAADAPMFRGARGCPLQPAIVQKAMRALRSALDLPETATPHALRHSFATH 271

Query: 297 SADAGATAHELMATYGWKTVDQAETYT 323
               G     +    G  ++   + YT
Sbjct: 272 LLAGGGDLRTIQELLGHASLSTTQVYT 298


>gi|291550383|emb|CBL26645.1| Site-specific recombinase XerD [Ruminococcus torques L2-14]
          Length = 356

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 46/282 (16%), Positives = 94/282 (33%), Gaps = 45/282 (15%)

Query: 100 DQIIRKSGDFDYRKITTKHIRSGVESRK-----------HTPSSAIQFLTSMRVLFKWAV 148
           +  I +    D  ++    I    E  K           +T     + ++++R  + +  
Sbjct: 72  NYTIEQFEVHDLERLEPVDIEEYQEYLKVYKNDEEKCITNTEKGLARKMSALRSFYGYYF 131

Query: 149 RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG----------------SQP 192
           +++ ++ NP L VE PK   + I     +++     +   G                ++ 
Sbjct: 132 KRQIISKNPTLLVEMPKMHEKAIIRLDTDEIAMLLDYVDHGGDNLTGQRKAYFEKTKNRD 191

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLA---- 246
                 LL +G+R S+     +Q +   NN  ++ T+K G  + V   +     L     
Sbjct: 192 LAILTLLLGTGIRVSECVGLDLQDIDFKNNGITV-TRKGGNQMVVYFGEEVENALKTYLY 250

Query: 247 -----MTPIGKE--TFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS 297
                  P+       F++  +++M         K  A +   NK  + H +R    T  
Sbjct: 251 TTRKQAIPLSGHENALFLSTQRKRMGVQAVENMVKKYAREVTPNKKITPHKLRSTYGTAL 310

Query: 298 ADAGATAHELMATYGWKTVDQA-ETYTK-GADRIRLGIKNSR 337
                  + +    G K V+   + Y     DR R      +
Sbjct: 311 YKETGDIYLVADVLGHKDVNTTKKHYAAIDEDRRRQAAGAVK 352


>gi|193212222|ref|YP_001998175.1| integrase family protein [Chlorobaculum parvum NCIB 8327]
 gi|254799328|sp|B3QM22|XERC_CHLP8 RecName: Full=Tyrosine recombinase xerC
 gi|193085699|gb|ACF10975.1| integrase family protein [Chlorobaculum parvum NCIB 8327]
          Length = 336

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 40/289 (13%), Positives = 89/289 (30%), Gaps = 49/289 (16%)

Query: 85  GSLAVNSRISFE----SYFDQIIRKSGDFDYRKITTKHIRSG--------VESRKHTPSS 132
            +++  +  ++      YF  +  ++G      +  + +           +  +   P S
Sbjct: 31  RNVSPKTVTAYRCDLLQYFSFLKEQAGLDRLEAVEPERVEVADVRLFMGHLLDKGIQPRS 90

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----- 187
             + L S++  +++ +    ++ +P   V  P+   +  R  ++E+ +Q    +      
Sbjct: 91  IARKLASVKSFYRFLLETGRISSSPLSLVVTPRLDKKVPRFVSEEEARQLFRRFESQEDN 150

Query: 188 ---------------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGT 231
                          E  + R   E L   GLR S+        +   + F   T K   
Sbjct: 151 AALQGDGKKAEVRQFETFRDRAVLEVLYGCGLRLSELIALERADVDLVHGFLKVTGKGRK 210

Query: 232 IITVELPDGFMKLLAM--------------TPIGKETFFINNDKQKMNATQFSIWFKAK- 276
              V L +  ++ L                        F+ +  +++         K   
Sbjct: 211 QRIVPLGEPAVEALRKYFEVRRNFFRIPLERTGESSRVFVTSRGRQLYPMLVQRMTKRYL 270

Query: 277 -ATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
                   K+ H +R   AT   + GA    +    G  ++   E YT 
Sbjct: 271 TPVSESEKKNPHILRHSFATHMLNGGADLKSVSEMLGHSSLTTTELYTH 319


>gi|308235890|ref|ZP_07666627.1| site-specific tyrosine recombinase XerC [Gardnerella vaginalis ATCC
           14018]
 gi|311115014|ref|YP_003986235.1| tyrosine recombinase XerC [Gardnerella vaginalis ATCC 14019]
 gi|310946508|gb|ADP39212.1| tyrosine recombinase XerC [Gardnerella vaginalis ATCC 14019]
          Length = 357

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 43/312 (13%), Positives = 90/312 (28%), Gaps = 66/312 (21%)

Query: 77  EYRKSAHWGSLAVNSRISFE---SYFDQIIRKSGDFDYRKITTKHIRSG--VESRKHTPS 131
           +Y +S     L   +  ++        +    +   D   ++T  +R      ++ H  S
Sbjct: 31  DYLRSN--KGLGSRTLRAYRVDVLQCLEWCGVNDLSDLNSVSTSVLRQWMYWLNKNHARS 88

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS- 190
           S  + + ++R  F W      ++ NP   +  PK   E      +   ++      + S 
Sbjct: 89  SLARKVVAVRGFFAWTTHVGLISANPAQILNTPKIVNELPTVLDEAQAEKLLDCAEDRSE 148

Query: 191 --------------------------------------------QPRLAFEFLLYSGLRC 206
                                                       +     E L  +G+R 
Sbjct: 149 DYAVDKSPATEHQENTPLKSQIKMRIKSKIKSQTKTKQEYVIALRNAAILELLYATGMRV 208

Query: 207 SDSCRAGVQHLQNNIFSIKTQKTGTIITV-----ELPDGFMKLLAM--------TPIGKE 253
            +     VQ +     ++K    G    V            K L          +    +
Sbjct: 209 GELTGLNVQDMDFENHTVKVTGKGNKQRVVPFGVPAAKACKKWLDCGRSALQEKSAASSQ 268

Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYG 312
             F+    ++++           A  A V + + H +R  +AT   + GA   E+    G
Sbjct: 269 ALFLGVRAKRIDQRIVRSIVHEAAAAANVPDVAPHALRHSAATHMLNGGADLREVQELLG 328

Query: 313 WKTVDQAETYTK 324
             +++  + YT 
Sbjct: 329 HSSLNTTQRYTH 340


>gi|209542780|ref|YP_002275009.1| site-specific tyrosine recombinase XerC [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209530457|gb|ACI50394.1| integrase family protein [Gluconacetobacter diazotrophicus PAl 5]
          Length = 324

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 50/309 (16%), Positives = 99/309 (32%), Gaps = 49/309 (15%)

Query: 70  TLKWLISEYRK-SAHWGSLAVNSRISFESYFDQIIRKSGD--------FDYRKITTKHIR 120
           T   L   +          +  +  ++    D+ +   G             +++   +R
Sbjct: 2   TGADLRDAFLDWMRDERRASPLTIAAYRGDLDRFLDFIGAHVGGTVDLAVLDRLSLADLR 61

Query: 121 SGVE--------------SRKHTP----SSAIQFLTSMRVLFKWAVRQEYVAINPCLSV- 161
           + +                R  TP     +  + +++MR  +++  R+ +   NP   + 
Sbjct: 62  AWLAFEHAQGHALAQRDRGRSSTPDRAARTRARRVSAMRSFYRYLARR-HGVTNPAPGLL 120

Query: 162 ERPKRKTEGIRPWTKEDMQQF------KSFWSEGSQPRLAFEFLLY-SGLRCSDSCRAGV 214
             P+ K+   RP ++             +    G     A   LLY  GLR S++    V
Sbjct: 121 AAPRTKSPLPRPLSEAQALDVPDGVGDLAVTPLGQARDAALFLLLYGCGLRISEALGLDV 180

Query: 215 QHLQ----NNIFSIKTQKTGTIITVELPDGFMKLL------AMTPIGKETFFINNDKQKM 264
           + L          +   K G    V +     ++L         P+     F      ++
Sbjct: 181 RDLDHALSAGGTLLVRGKGGRERLVPILPAVARVLTDWRARHPAPLPDAPLFPGVRGGRL 240

Query: 265 NATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
                    +A    AG+  + + H +R   AT   + GA    +    G  ++   + Y
Sbjct: 241 QPAVAQRAMRAWRDMAGLPDHATPHALRHSFATHLMEGGADLRTIQELLGHASLSTTQRY 300

Query: 323 TKGADRIRL 331
           T  AD  RL
Sbjct: 301 T-LADEARL 308


>gi|118463502|ref|YP_881424.1| integrase fusion protein [Mycobacterium avium 104]
 gi|118164789|gb|ABK65686.1| traSA:integrase fusion protein [Mycobacterium avium 104]
          Length = 382

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 61/372 (16%), Positives = 123/372 (33%), Gaps = 47/372 (12%)

Query: 2   TPSLRLPPFVTKERT--RHGK-IIYYF-----RKGHGRRIRLPYPHESTFIPAYMSALTG 53
           T ++R P    +     RHG+ + +       +     R          ++    +A+  
Sbjct: 5   TKTVRDPDDTIRTVPSARHGRGMRWRATYVDDQSREHSRSFGRKVDAQRWLDEVTAAVVT 64

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYR 112
                     P+    T +     +RK         +SR   E+   +      GD    
Sbjct: 65  GQ-----YVDPKAGQITFRDYAERWRKM---QVQRPSSRAHIETMLRRHAYPTLGDRQLT 116

Query: 113 KITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
            I    +++ V+  +  P++       +  + K A+R   +A NPC   + PK +   I 
Sbjct: 117 SILPSDVQAWVKGLQLAPATVGVVHGLVSTVMKSAIRDRRLAANPCDGTKLPKVQRPQIV 176

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ--- 227
           P T E ++  ++      Q  +       +GLR  +     V  ++    + ++  Q   
Sbjct: 177 PLTTEQVEAVRAELPAELQALV--TLAAGTGLRQGECFGLTVDRVRFLERVLTVDRQLVT 234

Query: 228 -----------KTGTI-ITVELPDGFMKLLAMTPIGK----ETFFINNDKQKMNATQFSI 271
                      KT      + LP      LA          +        + +  + F  
Sbjct: 235 VAGQAPTFGPPKTRASNRAIPLPKVVADALAAHLAAFPAEPDGLVFTQQGKPITRSTFGY 294

Query: 272 WFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKT-VDQAETYTK---- 324
            ++A   +A +      H +R + A++    G +   + A  G  + V+  +TY+     
Sbjct: 295 RWRAAVKEAKLPHGTGFHALRHYYASLLIRHGESVKTVQARLGHASAVETLDTYSHLWPD 354

Query: 325 GADRIRLGIKNS 336
             DR R  I + 
Sbjct: 355 SDDRTRDAIDSV 366


>gi|303326955|ref|ZP_07357397.1| tyrosine recombinase XerD [Desulfovibrio sp. 3_1_syn3]
 gi|302862943|gb|EFL85875.1| tyrosine recombinase XerD [Desulfovibrio sp. 3_1_syn3]
          Length = 331

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 46/284 (16%), Positives = 98/284 (34%), Gaps = 37/284 (13%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQI----IRKSGDF-DYRKITTKHIRSGVE- 124
           L WL  +          +  ++ ++ +   Q+      +  D     +++ KHI++ +  
Sbjct: 35  LSWLAVQ-------KGASDATQKAYGADLTQLAVFLREQGADLARPGEVSRKHIQAFLAW 87

Query: 125 --SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
              R    SS  + L ++R  F++ +R   V+ N    V  P+++    R    ++    
Sbjct: 88  LFRRGEAKSSMARKLAAVRSFFRFLLRSGRVSENVAAQVRNPRQEKHHPRALNVDETFAL 147

Query: 183 KSFWSEG-----------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
                              +     E L  SGLR S++    +   Q     ++    G+
Sbjct: 148 LDTPKAAPPSEAHAARLLCRDLALAELLYGSGLRISEALSLDLDDAQLRSRVLRVMGKGS 207

Query: 232 IITV-ELPD--------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
              +  L D           +   +    ++  F+     ++N  + +        +AG+
Sbjct: 208 RERLSPLSDTSCEALAAWLAERSYLALPEEQALFVGARGARLNRREAARIIAGLCRRAGL 267

Query: 283 --NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
               S H +R   AT    AGA    +    G + +   + YT+
Sbjct: 268 AFTVSPHSLRHSFATHLLAAGADLRSVQELLGHRRLTTTQRYTQ 311


>gi|2251178|emb|CAB10656.1| XerC protein [Mycobacterium leprae]
          Length = 302

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 37/273 (13%), Positives = 93/273 (34%), Gaps = 27/273 (9%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHTPSSA---IQFLTSM 140
             + ++R ++      ++           +++   +RS + +     ++     + ++++
Sbjct: 21  GRSEHTRRAYLGDLRSLLTHLEGRGSRLDQLSLPVLRSWLATAAGAGAARTTLARRISAV 80

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS--------QP 192
           +    WA  +  +A +P   ++ P+          ++   Q  +    G+        + 
Sbjct: 81  KAFTAWAKWRGQLAADPAARLQVPRAYRTLPAVLRQDQALQIMAAAKSGAEQGDPLALRD 140

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-----VELPDGFMKLLA- 246
           RL  E L  +G+R S+ C   +  +      ++    G         V   D     L  
Sbjct: 141 RLIVEMLYATGIRVSELCGLDIDDVDTRHRLVRVLGKGNKQRTAPFGVPAADALRGWLDD 200

Query: 247 -----MTPIGKETFFINNDKQKMNATQFSIWFKA--KATKAGVNKSAHGVRKFSATISAD 299
                +T        + +  ++++  Q                +   HG+R  +AT   +
Sbjct: 201 GRPALVTVESGPALLLGSRGRRLDVRQARTVVHQTVAVVAGAPDMGPHGLRHSAATHLLE 260

Query: 300 AGATAHELMATYGWKTVDQAETYTKGA-DRIRL 331
            GA    +    G  ++   + YT  A  R+R+
Sbjct: 261 GGADLRVVQELLGHSSLATTQLYTHVAVSRLRV 293


>gi|330830137|ref|YP_004393089.1| phage integrase [Aeromonas veronii B565]
 gi|328805273|gb|AEB50472.1| Phage integrase [Aeromonas veronii B565]
          Length = 321

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 42/279 (15%), Positives = 85/279 (30%), Gaps = 39/279 (13%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---- 126
           L  L+  +         ++    + +S    +    GD      T +   +  E+R    
Sbjct: 40  LSDLVELWFG---RHGQSLRDGEARKSKLLTVCHYLGDPLAVNFTARDFAAYREARLSGD 96

Query: 127 ------------KHTPSSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRP 173
                         TP++  +    +R +F    R   + + NP   +   K     +  
Sbjct: 97  ITDRRAINQEKQGVTPNTVNREHAYLRAVFNELKRLGEWQSENPLDGLRAYKVAEAELAF 156

Query: 174 WTKEDMQQFKSFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
              +++++  +  +E   P   L  +  L +G R S+        +  N  +    K+  
Sbjct: 157 LYPDELKRLLAACAESPNPDLLLVVKLCLATGARWSEVEELTQSQVSPNRITFTRTKSKK 216

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA----H 287
             +V +        A  P  +   F +  +           F+    +AG+   A    H
Sbjct: 217 SRSVPISPEL---YAQLPRKRGRLFSDCYR----------AFEMVVERAGLELPAGQNTH 263

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            +R   A+     G     L    G  T+     Y   A
Sbjct: 264 VLRHTFASHFMMNGGNILVLQKILGHSTIAMTMRYAHFA 302


>gi|198241749|ref|YP_002215264.1| integrase [Salmonella enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|197936265|gb|ACH73598.1| integrase [Salmonella enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|326623011|gb|EGE29356.1| integrase [Salmonella enterica subsp. enterica serovar Dublin str.
           3246]
          Length = 359

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 49/285 (17%), Positives = 92/285 (32%), Gaps = 30/285 (10%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--- 126
           T+   I  Y       +L+VN+     +    +  K G+    + TT+HI   +ES    
Sbjct: 75  TVSAWIDRYEVLLQRRNLSVNTYKIRSNQLATVREKMGEIILAEATTRHIAKFLESWITE 134

Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINP--CLSVERPKRKTEGIRPWTKEDMQQFK 183
            K+T + A++  + +  +F+ A+ + ++  NP     +   K   E ++  T    +   
Sbjct: 135 GKNTMAGAMR--SVLSDMFREAIVEGHIVKNPVEATRIPEIKVARERLQLETYNATRTAA 192

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
                     LA +  L +G R  D        + +N   +   KTG  I + L      
Sbjct: 193 EHLPVWFP--LAMDLALVTGQRREDIVNMKFSDVVDNRLYVTQIKTGMKIAIPLSLTLEA 250

Query: 244 --------LLAMTPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNKS---- 285
                   +     + +    I      N+    ++    +  F      +GVN S    
Sbjct: 251 PGLRLGTVIDRCRLVSRTDIMISAGIRKNSPTGNIHPDGLTKTFVKARKASGVNFSNNPP 310

Query: 286 -AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             H +R   A                 G    +  + Y    D  
Sbjct: 311 TFHEIR-SLAGRLYKNEHGEVFAQKLLGHTLANTTKLYLDERDDK 354


>gi|154504725|ref|ZP_02041463.1| hypothetical protein RUMGNA_02232 [Ruminococcus gnavus ATCC 29149]
 gi|153794899|gb|EDN77319.1| hypothetical protein RUMGNA_02232 [Ruminococcus gnavus ATCC 29149]
          Length = 288

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 34/274 (12%), Positives = 97/274 (35%), Gaps = 18/274 (6%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---TP 130
            + +  ++    +L   S   +++Y    + K  + + +++T + +R  + ++K      
Sbjct: 10  YLEQLEEAGKIRNLKDRSISCYKNYVSYFL-KYQNKNPKELTCQDVRVFLLAKKEEGLKA 68

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           ++   + +++R  ++  +   +      ++V R   + +     T  ++ +      +  
Sbjct: 69  TTLNLYNSAIRFFYRNVLHILWDD----ITVPRMILEHKLPTVLTASEIDRLLDAVDD-I 123

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE------LPDGFMKL 244
           + +  F  +  SG+R S+        +  +   I  + T   +           D   + 
Sbjct: 124 KYKAMFAVMYSSGMRVSEVIHLHYDDISRSNMQIHVRDTKNRMDRYTILSKRCLDILTQY 183

Query: 245 LAMTPIGKETFFINND-KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301
                  +   F N      +  +      +       + K  + H +R   AT   + G
Sbjct: 184 WFEKGRPRGILFPNKFTGNYLTVSTLEQVMRRAVADTELPKAATPHCLRHSFATHLMEQG 243

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335
              H + A  G +     E Y   +++  +GI++
Sbjct: 244 IERHNIQALLGHRDPKSTEVYLHVSNKSLMGIQS 277


>gi|91974776|ref|YP_567435.1| tyrosine recombinase XerD [Rhodopseudomonas palustris BisB5]
 gi|91681232|gb|ABE37534.1| tyrosine recombinase XerD subunit [Rhodopseudomonas palustris
           BisB5]
          Length = 351

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 41/287 (14%), Positives = 88/287 (30%), Gaps = 38/287 (13%)

Query: 80  KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
            SA+              Y  +  +     D   +  +   + +++R    SS  + L++
Sbjct: 55  ASANTIDAYRRDLADLSHYLTRSRKSIASADTEAL--RGYLADLDARGFKSSSVARRLSA 112

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS------------ 187
           +R LF++ + +     +P   +  PKR     +  +  D+ +   +              
Sbjct: 113 LRHLFRFLLSERIRVDDPAAILSGPKRGRGLPKVLSIADVDRLLGYARQQAEAADGAGGV 172

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKLLA 246
             ++     E L  +GLR S+         + +    +   K      V L     + + 
Sbjct: 173 RAARLYCLLEVLYATGLRVSELVSLPSSAARGDARMIVVRGKGDKERLVPLNHSAKQAMT 232

Query: 247 M-----------------TPIGKETFFINNDK--QKMNATQFSIWFKAKATKAGVN---K 284
                                    +   +      +    F+   K  A +AG++    
Sbjct: 233 RYLATAAAAEKAAATATKAGSKGSKWLFPSFGESGHLTRQHFARDLKDLAGRAGLSPRLV 292

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIR 330
           S H +R   A+     GA    +    G   +   + YT    DR++
Sbjct: 293 SPHVLRHAFASHLLHNGADLRIVQTLLGHSDISTTQIYTHVVEDRLK 339


>gi|314931491|gb|EFS95322.1| site-specific recombinase, phage integrase family
           [Propionibacterium acnes HL067PA1]
          Length = 420

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 57/373 (15%), Positives = 115/373 (30%), Gaps = 51/373 (13%)

Query: 23  YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSA 82
           +Y + G  +R+R      +         L            PR    TL   ++ +  + 
Sbjct: 27  FYDKNGTKQRVRGRGATRAEATKRLNKNLRQRIDGTRTATGPRGGL-TLNQWVNIWLATK 85

Query: 83  HWGS-LAVNSRISFE-SYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA-IQFLTS 139
                +   +    +  Y   I  K G    +++T + I+  + +      +  +    +
Sbjct: 86  QASEQMKPQTAQQHKIRYKQWIAPKLGSRPVKRLTAEEIQEVIAAGAQQGHAIPVNIFKT 145

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEG-------IRPWTK--EDMQQFKSFWSEGS 190
           M      AV+   V +N    +  P++++         I  W++  + M ++ +      
Sbjct: 146 MNAALNSAVKAGEVDLNSMKQLTPPRQRSAAGEKDTAHIEYWSRIMDKMCKWLAQPECEL 205

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQ---------------KTGTII 233
             R      +  GLR ++             N  +IK Q               KTG   
Sbjct: 206 HDRYTLTIAMLLGLRRAELLGLTWDCFDECMNKLTIKQQLMRQNDGSYIIQNSTKTGKNR 265

Query: 234 TVELPDGFMK---------LLAMTPIGKETFFINNDKQKMNATQFSIWFKA----KATKA 280
           T+ LP+ + +         L A  P      F+      +  + ++  ++        K 
Sbjct: 266 TLMLPERWKEAFLLQRQKSLTAAAPEWNNLVFLTPAGGPITYSMYNKLWRNTIVTYMAKE 325

Query: 281 GVNK-------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT-KGADRIRLG 332
           G            H  RK  A+  A  G      M+  G  +      YT   AD+ R  
Sbjct: 326 GQEWKEEQHYWRPHTCRKMCASWLAWGGVDIQTAMSILGHSSEAMTLYYTIINADQQRKA 385

Query: 333 IKNSRRISSVVDS 345
           ++    +    + 
Sbjct: 386 LEGLSNVYEHHNV 398


>gi|239905618|ref|YP_002952357.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
 gi|239795482|dbj|BAH74471.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
          Length = 382

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 46/291 (15%), Positives = 94/291 (32%), Gaps = 31/291 (10%)

Query: 53  GSTPKREYINSPRKKPT--TLKWLISEYRKSAHWGSLAVNSRISFESYFDQI-IRKSGDF 109
            + P +++     + P    L  L S+Y               + E   + + I   GD 
Sbjct: 76  ATAPIQDFNQVTGRVPGGMVLSELGSKYLAHMKASGRTEKHIRNIEHLVNHVFIPVLGDK 135

Query: 110 DYRKITTK--------HIRSGVESRK--HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL 159
               ++ +        H +          +  +  ++   +  +F + +   + ++NP  
Sbjct: 136 PVDSLSYQENMIPFILHFQGVSSRTGKVRSQYTVNKYCDYLSFIFNFGIDNGFTSVNPLK 195

Query: 160 SVERPKRKTEGIRPW----TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD--SCRAG 213
             ++PK +     PW    T +D ++           + A E     G R  +       
Sbjct: 196 IWKKPKVQ-----PWDMKLTLDDAKKIMVNAEP--HLKWAMEVCFNLGTRPGESELLSLK 248

Query: 214 VQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI 271
            + +     +++    KT +  TV +   F+K L       +T ++       N T    
Sbjct: 249 WEDIDFKASTVRIYASKTKSYRTVPINPEFLKRLEKEQAESQTGYVIEY-MGRNLTTIRK 307

Query: 272 WFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
            FK    +AG+      + +R   AT     GA    +    G  TV    
Sbjct: 308 AFKNACKRAGITYQTRMYDLRHLFATTLLRKGADLAAVSKMMGHSTVKMTA 358


>gi|56697962|ref|YP_168333.1| site-specific tyrosine recombinase XerC [Ruegeria pomeroyi DSS-3]
 gi|56679699|gb|AAV96365.1| tyrosine recombinase XerC [Ruegeria pomeroyi DSS-3]
          Length = 306

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 39/242 (16%), Positives = 74/242 (30%), Gaps = 19/242 (7%)

Query: 101 QIIRKSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINP 157
                 G     +I    +R+ +   +       S  + L++++  ++W   +E      
Sbjct: 47  HFGATQGLAPLARIGVPDMRAWMAQMRADGIGARSLARKLSAVKSFYRWLAEREGFEPTA 106

Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFWS-------EGSQPRLAFEFLLYSGLRCSDSC 210
            LS   PK + +  RP  ++  +                ++       L   GLR S++ 
Sbjct: 107 VLSTRAPKFQRKLPRPLAEDAARAMIDTVELQSSKPWIAARDMAVVTLLYGCGLRISEAL 166

Query: 211 RAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL------LAMTPIGKET-FFINNDKQK 263
               +            K G    V +             L   P+  ET  F       
Sbjct: 167 SLTGRAAPLPATLRIRGKGGKERLVPVIPVARAAVDTYLRLCPWPVEPETPLFRGARGGP 226

Query: 264 MNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
           +NA            + G+  +A  H +R   AT   +AG     +    G  ++   + 
Sbjct: 227 LNARSIQAVMAKARMQLGLPATATPHAMRHSFATHLLEAGGDLRAIQELLGHASLSTTQA 286

Query: 322 YT 323
           YT
Sbjct: 287 YT 288


>gi|256027362|ref|ZP_05441196.1| integrase/recombinase [Fusobacterium sp. D11]
 gi|289765331|ref|ZP_06524709.1| integrase/recombinase [Fusobacterium sp. D11]
 gi|289716886|gb|EFD80898.1| integrase/recombinase [Fusobacterium sp. D11]
          Length = 328

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 42/295 (14%), Positives = 96/295 (32%), Gaps = 44/295 (14%)

Query: 88  AVNSRISFESYFDQIIR--KSGDFDY---------RKITTKHIRSGV----ESRKHTPSS 132
           +  +   +  +    +     G+ D+         + I  + + + +    E RK   +S
Sbjct: 33  SEKTVKDYMFHLKDFLHFVYDGENDFSISEVIPLMQNIEKEDVEAYIVHLFEDRKLKKTS 92

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW--TKEDMQQFKSFWSEGS 190
               L++++ L+K          NP   ++  K           + +D+++    +   S
Sbjct: 93  VNTILSALKSLYKELESNGL--KNPVKYIKLFKVNRNIENILKVSIDDIRKIIGLYKIDS 150

Query: 191 QPR----LAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDGFM 242
           + +         L Y+G+R  +      +H         F +   K+G  +   +    +
Sbjct: 151 EKKYRNITILYTLFYTGMRSKELLTLQFKHYLKRENEYFFKLIETKSGKDVYKPIHKSLV 210

Query: 243 K-------------LLAMTPIGKETFFINN--DKQKMNATQFSIWFKAKATKAGVNKSAH 287
           K              L +  + K+  F  +  +   ++    +   +      G + S H
Sbjct: 211 KKLEEYKEYLMNMYSLDLKDLDKKYIFSTSVLNNSPLSYRSLNAIIQDMGKLIGKDISPH 270

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
            +R   AT  + +GA   E+    G       E Y     R  L  K   ++  +
Sbjct: 271 NIRHAIATELSLSGADILEIRDFLGHSDTKVTEVYINA--RSILEKKVLEKLPEI 323


>gi|291557209|emb|CBL34326.1| Site-specific recombinase XerD [Eubacterium siraeum V10Sc8a]
          Length = 301

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 48/276 (17%), Positives = 94/276 (34%), Gaps = 28/276 (10%)

Query: 75  ISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           I+EY +  +   +L   +  ++ +   Q    S     + I   +I  G   R+  P +A
Sbjct: 7   ITEYLRYCSEQRTLNSKTTKAYRTDLLQFAEFSSGMFSKDIIISYI--GCLHRQFKPKTA 64

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVE------RPKRKTEGIRPWTKEDMQQFKSFWS 187
            + + S++    + + QE +  NP   ++          K   +   ++     +  F  
Sbjct: 65  RRKIASLKAFAHYLMIQEIINANPFDKIDTSFREPMVLPKVIPMNIISEILANAYDVFCQ 124

Query: 188 EGS--------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---ITVE 236
             +        +     E L  +G R S+ C      +     +IK    G+    I +E
Sbjct: 125 CNTDFSRRNAVRNIAVLEILFATGARVSEICTLTPDMVDLTNHTIKIFGKGSRERIIQIE 184

Query: 237 LPDGFMKL------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288
            PD    L           +    FF+N   Q++      +    +A   G NK  + H 
Sbjct: 185 NPDVLEALNRYYETFRSDILESGFFFVNKLHQRLTEQSVRVMISNQAAAIGYNKHITPHM 244

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            R   AT+  +       +    G  ++   + YT 
Sbjct: 245 FRHSFATLLLEEDVDIRYIQKILGHSSIATTQIYTH 280


>gi|157826278|ref|YP_001493998.1| site-specific tyrosine recombinase XerC [Rickettsia akari str.
           Hartford]
 gi|166918897|sp|A8GQ15|XERC_RICAH RecName: Full=Tyrosine recombinase xerC
 gi|157800236|gb|ABV75490.1| site-specific tyrosine recombinase XerC [Rickettsia akari str.
           Hartford]
          Length = 305

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 43/258 (16%), Positives = 97/258 (37%), Gaps = 28/258 (10%)

Query: 110 DYRKITTKHIRSGVESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
             +    + IRS +  R +   T SS  + L++++  +++  +   +  +   S++ PK+
Sbjct: 54  HIKNADIRLIRSWLAKRNYDNFTTSSIARGLSAVKNFYRFLEKTTQLNSHIIFSIKSPKK 113

Query: 167 KTEGIRPWTKED-------MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN 219
                +  +++D       ++++ +      + +     +  SGLR S++      HLQN
Sbjct: 114 TKLLPKALSEDDVVVSLEHIEEYGNVKWVELRNKSLLVLIYASGLRISEALSITKLHLQN 173

Query: 220 NIFSIKTQKTGTIITVELPD-------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIW 272
             F     K      +            ++++L       E  F     +K+    F+  
Sbjct: 174 LEFIRIIGKGSKERIIPWLPIAKNLITQYLEILPYKLGDNEPIFRGKRGKKLQPQVFNRE 233

Query: 273 FKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
                   G+  + +AH  R   A+   + GA    +    G K++   + YTK      
Sbjct: 234 LIKLKHFYGLPQHLTAHSFRHSFASHLLERGAELRSIQELLGHKSLSTTQNYTK------ 287

Query: 331 LGIKNSRRISSVVDSDDP 348
               + +R+ +V  +  P
Sbjct: 288 ---TSIKRLEAVYTTAYP 302


>gi|323138436|ref|ZP_08073505.1| integrase family protein [Methylocystis sp. ATCC 49242]
 gi|322396232|gb|EFX98764.1| integrase family protein [Methylocystis sp. ATCC 49242]
          Length = 428

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 58/379 (15%), Positives = 122/379 (32%), Gaps = 52/379 (13%)

Query: 19  GKIIYY--FRKGHGRRIRLPYPH----ESTFIPAYMSALTGSTPKREYI---NSPRKKPT 69
           GK +YY  +R   G R R+         +        A  G   K +      + R++  
Sbjct: 37  GKRVYYVDYRNAGGARKRMKIGDHGKITTDEARKMALATLGGVVKGDDPLTERTTRRESI 96

Query: 70  TLKWLISEYRKSAH----WGSL----AVNSR-ISFESYFDQIIRKSGDFDYRKITTKHIR 120
           T+K L ++Y  +A     +G        ++           I+   G    +++T   + 
Sbjct: 97  TVKELCADYMAAAEKGLIFGKKRRPKKPSTISQDHARIDRHIVPLLGKKLVKELTRADVA 156

Query: 121 S----------GVESRKHTPS----------SAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
                       ++     P           +A +    +  +  WAV +  +  NP   
Sbjct: 157 KFIRDVTTGKTALDLPSDKPRGRVIVRGGAGTAARAANFLGAVLTWAVHEGIIDSNPAHG 216

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE------FLLYSGLRCSDSCRAGV 214
           V+R +   +  R  T ++ +   +   +       ++       +  +G R  +  +   
Sbjct: 217 VKR-QADQKRTRRLTPDEYRALGNALRQAEDEMATWQGVAGARLITLTGCRLGEIAKLRW 275

Query: 215 QHLQNNIFSIKTQKTGTII-TVELPDGFMKLLAMTPI--GKETFFINNDKQKMNATQFSI 271
             +       + Q T     T  +      +LA      G                  + 
Sbjct: 276 SEVDEAAGCFRLQDTKEGASTRPMGRAVFDILAGVDRVDGSPYVLPAVRGTG-AYGGLTG 334

Query: 272 WFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
           +F+  A +AG+   + H +R   A+ +AD G     + A  G         Y    D + 
Sbjct: 335 FFEKVAARAGLQGVTPHTMRHSFASTAADLGFAESTIAAMLGHAAGSVTARYVHHLDAVL 394

Query: 331 LGIKN--SRRISSVVDSDD 347
           +   +  + RIS+++D  +
Sbjct: 395 IAAADRVAARISAMLDGRE 413


>gi|302878736|ref|YP_003847300.1| integrase family protein [Gallionella capsiferriformans ES-2]
 gi|302581525|gb|ADL55536.1| integrase family protein [Gallionella capsiferriformans ES-2]
          Length = 328

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 51/319 (15%), Positives = 104/319 (32%), Gaps = 33/319 (10%)

Query: 23  YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSA 82
           YYF     + I L           Y  A+     K   +  P      L  ++  Y K  
Sbjct: 22  YYFVNTDNKWIPLG--------KEYCIAMQ----KWAAMLQPVIGKQRLSSVMDTYIKE- 68

Query: 83  HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRV 142
                   ++  + +    +    GD     +  K+I + +   ++ P  + + +  +  
Sbjct: 69  ELPLRKPLTQTDYLASLAILRPVFGDMFPEDVEPKNIYAFM-RMRNAPVRSNRDVAVLSN 127

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202
           +   A++   +  NPC  V R              ++  F     E  Q  +  + L  +
Sbjct: 128 VMNQAIKMGLINTNPCKQVRRNVENPRTREVL-DSEIVAFLPHCPEWLQAYIRLKLL--T 184

Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF----FIN 258
           GLR  D     +  L+ +   ++T K G  +     D    ++      +        IN
Sbjct: 185 GLRQGDMLSIRLDQLREDGLFVQTWKRGKKLLFSWSDNLRTIVETIKSLRHRVTSLHLIN 244

Query: 259 N--DKQKMNATQFSIWFKAKATKAGVNKSA------HGVRKFSATISADAGATAHELMAT 310
           +  D  K+  + F   +     +A    S       + +R   AT + + G  A ++   
Sbjct: 245 SDRDGTKLTTSGFKSAWARAMKRAIEAGSLTETFAENDLRAKVATEARELGQNATKI--- 301

Query: 311 YGWKTVDQAE-TYTKGADR 328
            G  +    +  Y +G  +
Sbjct: 302 LGHSSDAVTKRHYERGTSK 320


>gi|226355111|ref|YP_002784851.1| Tyrosine recombinase xerC-like protein [Deinococcus deserti VCD115]
 gi|226317101|gb|ACO45097.1| putative Tyrosine recombinase xerC-like protein [Deinococcus
           deserti VCD115]
          Length = 379

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 59/351 (16%), Positives = 106/351 (30%), Gaps = 46/351 (13%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT--------TLKWLISEYR 79
           G G  + L Y  +      Y SA T +  + +      ++          TL   +  + 
Sbjct: 19  GWGGYVTLGYGPDGKQQRRYFSAKTQAEAREKLQALVSERNGGCLSSETLTLAAYLDRWL 78

Query: 80  KSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQ 135
                  +  N+  S+E      I  + G     K+T  HI   V +      +   A+ 
Sbjct: 79  THKQ-RDVKFNTHRSYEMTARVHIKPRLGKVQLDKLTPLHIEELVSALLAEGQSAKVALG 137

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195
            +  +R     AVR + V  N   SV  PK   + ++ WT ++  +F +   E  +    
Sbjct: 138 CVKLLRTALTQAVRWQLVGRNVAQSVTPPKHTPKEMQVWTPDEASRFLAVAREH-RLYAL 196

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ---------------KTG-TIITVELPD 239
           F   L +G+R  +      + +     ++  Q               KT  +  T+ L  
Sbjct: 197 FYLALATGMRRGELLGLKWESINMLAGTLVVQHNLIDRVSSVTLETPKTRASRRTIALSP 256

Query: 240 GFMKLLAMTPIG--------------KETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284
             ++ L                        F ++    M        F+    KA V   
Sbjct: 257 DTVEALRAHRHSQWLEQCKAGEKWQEHGMVFPSDVGTLMFPANLMGAFRRLCAKARVPAI 316

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADRIRLGIK 334
             H +R  SA++   A      +    G          Y    +  R    
Sbjct: 317 RLHDLRHTSASLLIRANVPPKVVADRLGHTDPGFTLRVYAHVYEEQRRAAA 367


>gi|323139749|ref|ZP_08074786.1| integrase family protein [Methylocystis sp. ATCC 49242]
 gi|322394986|gb|EFX97550.1| integrase family protein [Methylocystis sp. ATCC 49242]
          Length = 331

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 51/271 (18%), Positives = 88/271 (32%), Gaps = 30/271 (11%)

Query: 91  SRISFES---YFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFK 145
           +R ++      F     + G      I   HI + VE+  R H+  +A Q L ++R+LF 
Sbjct: 53  TRRAYGRSIGEFLAWCEQRGLASIIDIDPLHIGAYVEALTRSHSAPTAKQRLAAIRMLFD 112

Query: 146 WAVRQEYVAINPCLSVERPKR--KTEGIRPWTKED----MQQFKSFWSEGSQPRLAFEFL 199
           W V  + +  NP  SV  PK   K         E+    +       + G + R     +
Sbjct: 113 WLVTGQIIPTNPAASVRGPKHVVKVGKTPVLDPEETRILLDSIDVTTTVGLRDRALIALM 172

Query: 200 LYSGLRCSDSCRAGVQH--LQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIG----- 251
           +YS  R   +    V+   +QN    ++  +K G    +         L     G     
Sbjct: 173 VYSFARVGAALAMKVEDVYVQNRRLWVRLHEKGGKRHEMPCHHNLESYLHAYIDGCYLAA 232

Query: 252 --KETFFINNDKQ-------KMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADA 300
             K   F    +         +         + +A  AG+      H  R    T     
Sbjct: 233 DPKAHLFRTIGRGTGELTLTPLPQANAYAMIRRRALAAGIATKVGNHSFRATGITAYLKN 292

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRL 331
           G T  +  +     +    + Y +  D + L
Sbjct: 293 GGTLEKAASMANHASTRTTQLYDRRRDEMSL 323


>gi|298375519|ref|ZP_06985476.1| mobilizable transposon, int protein [Bacteroides sp. 3_1_19]
 gi|298268019|gb|EFI09675.1| mobilizable transposon, int protein [Bacteroides sp. 3_1_19]
          Length = 347

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 45/234 (19%), Positives = 87/234 (37%), Gaps = 14/234 (5%)

Query: 109 FDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168
             +R+      +    +R  + +SA  + ++ R L K A R +++  N    +++ + + 
Sbjct: 116 KKFREYLLNAKQLKHSNRPISLNSASGYYSTFRGLLKIAYRDKWLRENINDYLDKIEPQD 175

Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-----QNNIFS 223
                 T ++++Q  +   +    + A  F   +GLR SD      +       Q     
Sbjct: 176 VKKEYLTLDEVKQLAATPCDIPVLKAASLFACLTGLRISDILNLQWEDFAIAPDQGYCLR 235

Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
           I+TQKT T  T+ +     + L   P   + F      + +  +  +   K    KAG+ 
Sbjct: 236 IRTQKTQTEATLPISYEAYE-LCGMPDTGKVF------KGLKRSMINYPLKNWLKKAGIT 288

Query: 284 K--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335
           K  + HG R   A I    G   + +      K V   + Y    +  +    N
Sbjct: 289 KPITFHGFRHSYAVIQISLGTDIYTVSKMLTHKNVSTTQIYADLVNVKKRETAN 342


>gi|327413091|emb|CAX68120.1| shufflon-specific DNA recombinase [Salmonella enterica subsp.
           enterica]
          Length = 371

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 44/284 (15%), Positives = 93/284 (32%), Gaps = 35/284 (12%)

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI----IRKSGDFDYRKITTKH 118
             R K   L   + +Y ++          +  +   F +I         D    +IT+  
Sbjct: 2   KKRIKKMLLGKALDKYYRTVSVN------KRGYMQEFYRISVIKRSALADKCMDEITSVD 55

Query: 119 IRSGVESR----------KHTPSSAIQFLTSMRVLFKWA-VRQEYVAINPCLSVERPKRK 167
           I    ++R            +P++    L  +  L+  A +       NP   V +P   
Sbjct: 56  IAEYRDARLGVVSKRTGRAISPNTVRLELGLLSALYNIARIEWGTCTHNPVEYVRKPPPS 115

Query: 168 TEGIRPWTKEDMQQF-KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSI 224
               R  T  + ++  ++      Q    F+  L + +R  +      +++     +  +
Sbjct: 116 PGRNRRLTSTEERRITRALRKRNPQQLAIFQLALETAMRQGEILALRWEYVDLHLGVAHL 175

Query: 225 KTQKTGTIITVELPDGFMKLLA--MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
              K GT   V L     ++L     P+    F          +  F   ++    + G+
Sbjct: 176 PVTKNGTARDVPLSYKARQVLREFAGPLSGPVF-------TYTSNGFKSAWRTLIAELGI 228

Query: 283 -NKSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTK 324
            +   H +R  + +   + G     E+ A  G K++   + YT 
Sbjct: 229 EDLHFHDLRHEAVSRLFELGTLNMMEVAAISGHKSLSMLKRYTH 272


>gi|302874927|ref|YP_003843560.1| integrase family protein [Clostridium cellulovorans 743B]
 gi|307690455|ref|ZP_07632901.1| integrase family protein [Clostridium cellulovorans 743B]
 gi|302577784|gb|ADL51796.1| integrase family protein [Clostridium cellulovorans 743B]
          Length = 276

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 46/268 (17%), Positives = 89/268 (33%), Gaps = 23/268 (8%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD--YRKITTKHIRSGVESRKHT 129
           KW+I            ++N+  S++    Q +           K      +  +   + +
Sbjct: 6   KWIIK-----MREEDKSINTIESYKGDVIQFMNFIEKEPEEITKEDILKYKEYLALNEMS 60

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI--RPWTKEDMQQFKSFWS 187
             SA +   S+   F +   +  +  +  + +++ K + +        KED +      S
Sbjct: 61  VKSANRKYISVNSFFSFLQTE--LEKDVQMRIKKDKIQNQEYLEEMLAKEDFENLVQVAS 118

Query: 188 EGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
             +  R    F  L Y+G+R S++ +     + N++  IK  K      V +P     +L
Sbjct: 119 SYNDYRAVAIFNTLFYTGMRISEALQLKTTDISNDVVVIK-GKGSKHRNVFIPQKLKSIL 177

Query: 246 -----AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATIS 297
                   P   +  F    K  +N        K  A  AG+      AH  R       
Sbjct: 178 NTYMIYRLPCKSDALF-TGKKGPINRKTVDAIIKKYAAIAGISMTKAHAHNFRHLYCLTL 236

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKG 325
            + G T   +    G   ++    YT+ 
Sbjct: 237 IEKGLTIDTVADLAGHSNINTTRIYTRK 264


>gi|223938389|ref|ZP_03630283.1| integrase family protein [bacterium Ellin514]
 gi|223892958|gb|EEF59425.1| integrase family protein [bacterium Ellin514]
          Length = 337

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 46/337 (13%), Positives = 103/337 (30%), Gaps = 52/337 (15%)

Query: 55  TPKREYINSPRKKPTTLKW----LISEYRKSAHW-GSLAVNSRISFESYFDQI----IRK 105
            P+ +    P +   T        I  +          ++ ++ ++     +      ++
Sbjct: 8   VPEGDPTPEPAEVSGTNSASEEKWIKTFLHHLAADRGASIYTQRNYRQTLVEFYGWHRKE 67

Query: 106 SGDFD----YRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV 161
            G         +   +     +     + ++      ++R  +K+ +R   V+ +P  +V
Sbjct: 68  RGVEPAWENLHRDDFRGYLRFLGRGNLSRAAIQLRFCALRTFYKFLIRHGVVSASPIKNV 127

Query: 162 ERPKRKTEGIRPWTKEDMQQFKSFWSEGS------------------QPRLAFEFLLYSG 203
             PK +    +  T + M +      +                    +     E +   G
Sbjct: 128 SLPKMEKRLPKFLTAQQMVELLGAPLKPLATPKKKGPGRPISATVCYRDVAILETIYSCG 187

Query: 204 LRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDGFMKLLA-------MTPIGKETF 255
           LR S+ C    Q +  N   ++ +  G     V + +  +  +         +P G    
Sbjct: 188 LRISELCGLTAQDIDWNEQLVRVRGKGKKERQVPIGEPALTAIRNYWSTLEQSPGGGSPV 247

Query: 256 FI--NNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATY 311
           F+        ++        K     AG++   + H +R   AT   DAGA    +    
Sbjct: 248 FLGETEKAAALSPRVLQQRLKKYLALAGLDPSLTPHKLRHSYATHMLDAGADLRSVQELL 307

Query: 312 GWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
           G   +   + YT           ++ R+    DS  P
Sbjct: 308 GHAHLITTQVYTHV---------STERLKRAYDSAHP 335


>gi|172041119|ref|YP_001800833.1| putative phage integrase [Corynebacterium urealyticum DSM 7109]
 gi|171852423|emb|CAQ05399.1| putative phage integrase [Corynebacterium urealyticum DSM 7109]
          Length = 265

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 43/256 (16%), Positives = 86/256 (33%), Gaps = 10/256 (3%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
           + ++       SL+  +      + ++++    +     +T   +   +  +   P +  
Sbjct: 7   LDKWGDYMTAASLSDETLYLRRRHVNRVLTHI-NKPLDDLTLDDLIDWLAQQNWKPETRR 65

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
            + +S+R  F W  +      N    + R +      RP    D+    +     ++ +L
Sbjct: 66  GYRSSLRQFFAWREKAGLGE-NIARDLPRARLHRSLPRP--ARDVDILLALRKAPARTQL 122

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254
             E + Y GLR  + C+     L  +   +   K G    V LP      +     G   
Sbjct: 123 MIELMAYGGLRRGEVCKLRTCDLVGDTLRV-VGKGGHERFVPLPPHLSGQIRGMTAG--Y 179

Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWK 314
            F       ++A         +A  AGV  + H +R   AT++   G     + +  G  
Sbjct: 180 LFPGRIDGHLSAAYVGKLI-GRALPAGV--TPHQLRHRFATVAYRKGRDIVAVQSLLGHA 236

Query: 315 TVDQAETYTKGADRIR 330
            +D    Y    D  R
Sbjct: 237 KLDTTMIYVALDDSAR 252


>gi|114764172|ref|ZP_01443410.1| tyrosine recombinase [Pelagibaca bermudensis HTCC2601]
 gi|114543324|gb|EAU46340.1| tyrosine recombinase [Roseovarius sp. HTCC2601]
          Length = 308

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 39/263 (14%), Positives = 82/263 (31%), Gaps = 27/263 (10%)

Query: 88  AVNSRISFESYFDQII--------RKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQF 136
           + N+  ++ +   + I           G     ++TT  +R+ +   +       +  + 
Sbjct: 27  SENTITAYRADVLEFIVFLTSHHAEPQGLAPLARVTTPDMRAFLAHLRGQGVGSRTMARK 86

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-------EG 189
           L++++  ++W    E       +    PK + +  RP  ++  +               G
Sbjct: 87  LSAVKSFYRWLAELEGFEPTAVMMARAPKFQKKLPRPLAEDAAKAMIDTVEMQAADSWIG 146

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM-- 247
           ++       L   GLR S++     + L          K G    V +     + L    
Sbjct: 147 ARDAAVVTLLYGCGLRISEALGLRGRDLPLGESLRIVGKGGKERIVPVLPIARRALDTYL 206

Query: 248 -----TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADA 300
                 P      F       +N        +A   + G+  +A  H +R   AT    A
Sbjct: 207 RLCPYDPEPDAPVFRGKRGGALNPRLIQKVTEAARLQLGLPATATPHAMRHSFATHLLAA 266

Query: 301 GATAHELMATYGWKTVDQAETYT 323
           G     +    G  ++   + YT
Sbjct: 267 GGDLRAIQELLGHASLSTTQAYT 289


>gi|75812424|ref|YP_320043.1| Phage integrase [Anabaena variabilis ATCC 29413]
 gi|75705180|gb|ABA24854.1| Phage integrase [Anabaena variabilis ATCC 29413]
          Length = 343

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 54/311 (17%), Positives = 105/311 (33%), Gaps = 35/311 (11%)

Query: 49  SALTGSTPKREYINSPRKKPTTLKWL-ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG 107
            A +    +          PT ++W+ + E+ +S    +LA NSR  +E    + +    
Sbjct: 21  QAPSTLQGQSRSRARKTSLPTDIRWIKVLEFLRS---TNLAPNSRKLYERELKRFLG-WT 76

Query: 108 DFDYRKITTKHI-------RSGVESRKHTP---SSAIQFLTSMRVLFKWA--VRQEYVAI 155
              Y ++  +H+       R  V++    P   SS    + +++  FKW      + +A 
Sbjct: 77  QLHYHELRPRHLGLYKEYLRDEVKTDSGKPLSKSSINAGVAALKSFFKWMCYTYPDIIAT 136

Query: 156 NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE--GSQPR-LAFEFLLYSGLRCSDSCRA 212
           NP L ++  K      +  T E M++  S       ++ R  A   +L  GLR  +  + 
Sbjct: 137 NPTLGIKLEKVPLPPAQSLTDEQMERVWSALELLGETKQRDTALVHILSHGLRAGEIVQL 196

Query: 213 GVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE----------TFFINND-- 260
            V      +  +   KT     V L      +L      +              I++   
Sbjct: 197 NVGSFDGKLLFLPDTKTNEPRLVPLRKESRDVLEAYLRSRREQGEELNSLTPLMISHHAS 256

Query: 261 --KQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVD 317
               +++        +     AG+ +   H  R   AT     G          G ++  
Sbjct: 257 YKGDRLSYHGIYFAVEKIGELAGIEDLHPHQFRHTYATELLLLGVDPSHARKLTGHQSEK 316

Query: 318 QAETYTKGADR 328
               YT  +++
Sbjct: 317 AFRRYTLRSEQ 327


>gi|238919949|ref|YP_002933464.1| integrase [Edwardsiella ictaluri 93-146]
 gi|238869518|gb|ACR69229.1| integrase [Edwardsiella ictaluri 93-146]
          Length = 364

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 48/282 (17%), Positives = 98/282 (34%), Gaps = 31/282 (10%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RK 127
           ++   ++EY +   +  +A N+  +  S    +    G  +  ++TT+ I   +      
Sbjct: 68  SVSQWMAEYLRILGYRGVAANTLRARRSQIKAVQTVIGQKNIAQVTTRDIALLLHHYVLI 127

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              S+A    + +  LF+ A+    +  NP      P  + +  R  T+  +Q   +   
Sbjct: 128 GHLSAAGLMRSFLNALFREAIAAGLIDYNPVTQTRTPPIRVKRRR-LTETMLQTVYAQAL 186

Query: 188 EGSQPRLAF----EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL------ 237
           +    +       E  L +G R  D C    Q ++ +   +  +KTG  + + L      
Sbjct: 187 QLEPHKPWLPRSIELALLTGQRREDLCALRWQDIREDKLWVIQRKTGARLAMTLDLHLQL 246

Query: 238 ---PDGFMKLLAMTPIGKET-FFINNDKQKMNA--------TQFSIWFKAKATKAGV--- 282
              P    ++LA   I   + + +N+ + ++N            +  F     K G+   
Sbjct: 247 GDYPLRLREVLARCRIPGPSDYLLNSQRPRLNRRPGGSLVPDTLTKGFSRLMDKCGLVQE 306

Query: 283 --NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
               S H +R   ++    A           G K     E Y
Sbjct: 307 ISPPSFHEIR-SLSSRMYQAQYGTEFCQRLLGHKNRHMTEKY 347


>gi|254450597|ref|ZP_05064034.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 238]
 gi|198265003|gb|EDY89273.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 238]
          Length = 358

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 47/322 (14%), Positives = 110/322 (34%), Gaps = 20/322 (6%)

Query: 9   PFVTKERTRHGKIIYYFRK---GHGRRIRL-PYPHESTFIPAYMSALTGSTPKREYINSP 64
             +     +  K  +YF+K   G  +RI +  +P  S       +        R    + 
Sbjct: 28  KGLVLFVGKRSKT-WYFQKDVGGQTKRILIGRFPIISAQAARQTALGFALEMGRGAGKAA 86

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
           +    TL+  +  Y         +  +++   +     ++        +I+         
Sbjct: 87  QIGAPTLEAAMEVYLARPKLR--SETNKVGMRAQLTLHLKDWMRLPLDEISKAMTVRRHH 144

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
               +PS+A   L S R ++  A R   +   P +++E  + K +G      +  ++   
Sbjct: 145 DMAGSPSAANHVLRSFRAIYNHARRTGDLPECPTMAIEWFEDKPDGRIIENLKHWRKTID 204

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
                   R+ +E LL++GLR ++      + +  +   +   K G    + +     ++
Sbjct: 205 DLPNPIH-RVFYELLLFTGLRKTEVFTLKWEQILEDRIHLPMTKNGRSFDLPISQLHHEI 263

Query: 245 LAMT-PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGAT 303
           LA   P+  +  F          ++     +       +  + H  R+  AT++ +AG  
Sbjct: 264 LAPLRPLSSDWVF------PSPKSETGHITRPVR----LKYNPHMHRRTFATVAMEAGVL 313

Query: 304 AHELMATYGWKTVDQA-ETYTK 324
              +        +    + YT+
Sbjct: 314 EEIVGRLLNHTPLSITGQRYTR 335


>gi|26988264|ref|NP_743689.1| phage integrase, putative [Pseudomonas putida KT2440]
 gi|24983008|gb|AAN67153.1|AE016344_3 phage integrase, putative [Pseudomonas putida KT2440]
          Length = 368

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 58/356 (16%), Positives = 118/356 (33%), Gaps = 40/356 (11%)

Query: 7   LPPFVTKERT-RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS-- 63
           LPP + ++   R+G   Y +R     R+      ++  I   +SA          +++  
Sbjct: 13  LPPNLYRKTDKRNGVTYYTYRDPVSDRMFGLGSDKAKAIAEAVSANMALQVAPPTLSARI 72

Query: 64  ---PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
              P          I EY        L+ +S  +     +++ +  G+   R +TT  I 
Sbjct: 73  APEPSAPDRKFSEWIVEYFADLKDRELSESSMRNLRMRLNRVEKAFGERGIRTLTTMDIA 132

Query: 121 SGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
             + +  ++     A    + +R LF  A+ + +V  NP  + +  + K +  R  T E 
Sbjct: 133 DYLSTYVKEGKAQMARAMRSLLRDLFMGAMARGWVDYNPVEATKAARVKIKRQR-LTLEL 191

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE-- 236
            +      ++    R A E  L +G R  D      +   +    +   KTG  + +   
Sbjct: 192 WKAIYEEAAQPWLKR-AMELALITGQRREDIASFVFRDEVDGFLQVVQSKTGARLRISTS 250

Query: 237 -----LPDGFMKLLAM---------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
                +     +++                 T         +     S  F A   +A V
Sbjct: 251 VTLECISLSLGEVIRRCRDRVLSKHLVHHHRTISRAKAGSPIMLDTISKEFAAARDRAAV 310

Query: 283 NK---------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY--TKGAD 327
                      + H  R  +A +  + G    +     G ++    + Y  ++GA+
Sbjct: 311 KLGLDLGASPPTFHEQRSLAARLHDEEG---RDAQRLLGHRSAKMTDLYRDSRGAE 363


>gi|28198888|ref|NP_779202.1| phage-related integrase [Xylella fastidiosa Temecula1]
 gi|182681588|ref|YP_001829748.1| integrase family protein [Xylella fastidiosa M23]
 gi|28056979|gb|AAO28851.1| phage-related integrase [Xylella fastidiosa Temecula1]
 gi|182631698|gb|ACB92474.1| integrase family protein [Xylella fastidiosa M23]
 gi|307580023|gb|ADN63992.1| integrase family protein [Xylella fastidiosa subsp. fastidiosa
           GB514]
          Length = 410

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 55/348 (15%), Positives = 121/348 (34%), Gaps = 34/348 (9%)

Query: 19  GKIIYYFRK-----------GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK 67
           G I++ FR            G    + L          A + A+  S  +++ +      
Sbjct: 34  GGIVWRFRYRLAGRYEKLTLGKYPALSLRNARLKRDEAASLVAMGTSPARQKQLAKVTAA 93

Query: 68  PT-TLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVES 125
              T++     + +         ++      Y D+ I+   GD   R++T + IRS +  
Sbjct: 94  DAMTVRDFAERFFREIQSRDRKDSTMP--RRYLDKDILPFVGDKPMREVTAEEIRSLIWR 151

Query: 126 RKHTP--SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER--PKRKTEGIRPWTKEDMQQ 181
           +K     ++A Q    ++ L  +AV    +  NP L++      +     R  + ++++ 
Sbjct: 152 KKEQGFDATAGQIRGVLKRLCDYAVTCGLMPTNPVLALPMRHVYKAVSRDRALSPDEIRL 211

Query: 182 F-KSFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT----QKTGTIIT 234
           F ++ W+   +   +LA   +L + +R S+   A   H+  +           KTG    
Sbjct: 212 FLRAVWASRIRRQFKLALHLILLTMVRKSELLLARWDHVHLDQAQWHIPAEHSKTGKPHI 271

Query: 235 VELPDG---FMKLLAMTPIGKETFFINNDK--QKMNATQFSIWFKAKATKAGVNK-SAHG 288
           V L        + L +   G       +    +       +          G++  + H 
Sbjct: 272 VYLSRQAVVLFEALRVLAGGSALVMPGSGTLTRPFAHNALNHALGKAMQWQGIHAFTIHD 331

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKG--ADRIRLGIK 334
           +R+ ++T   + G  +  +              Y +   AD+ R  ++
Sbjct: 332 LRRTASTWLHEHGWASDVVEKALNHSIGGVRGVYNRAEYADQRRQMLQ 379


>gi|327412982|emb|CAX68000.1| shufflon-specific DNA recombinase [Salmonella enterica subsp. VII]
          Length = 383

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 45/281 (16%), Positives = 89/281 (31%), Gaps = 25/281 (8%)

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
               R K  +L   + +Y  +A         R  F                 +ITT  I 
Sbjct: 2   ARPQRIKKMSLSKALDKYYATASVHKRGH--RQEFYRVNVIQRHPLARKAMDEITTVDIA 59

Query: 121 SGVESRKHTPSSAIQF----------LTSMRVLFKWA-VRQEYVAINPCLSVERPKRKTE 169
           S  + R    ++              L  +  L+  A V       NP   V +PK    
Sbjct: 60  SYRDDRLAQMNTRTGRCISGNTVRLELALLSSLYNLASVEWGTCRTNPVEMVRKPKISGG 119

Query: 170 GIRPWTKEDMQQFKSFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIK 225
             R  T  + ++  S + +   P     F   + + +R  +      +H+     +  + 
Sbjct: 120 RDRRLTSHE-ERCLSRYFQNQNPALHAIFHLAIETAMRQGEILSLRWEHIDLQHGVAHLP 178

Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG-VNK 284
             K G+   V L     +LL        T  +        ++ F   ++    +   ++ 
Sbjct: 179 LTKNGSSRDVPLSRKARQLL-----QGMTVALTGSVFNYTSSGFKSAWRVALQRLSIIDL 233

Query: 285 SAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTK 324
             H +R  + +   + G     E+ A  G ++++  + YT 
Sbjct: 234 HFHDLRHEAISRLFELGTLNVMEVAAISGHRSLNMLKRYTH 274


>gi|301310050|ref|ZP_07215989.1| tyrosine type site-specific recombinase [Bacteroides sp. 20_3]
 gi|325280034|ref|YP_004252576.1| integrase family protein [Odoribacter splanchnicus DSM 20712]
 gi|300831624|gb|EFK62255.1| tyrosine type site-specific recombinase [Bacteroides sp. 20_3]
 gi|324311843|gb|ADY32396.1| integrase family protein [Odoribacter splanchnicus DSM 20712]
          Length = 406

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 47/275 (17%), Positives = 99/275 (36%), Gaps = 26/275 (9%)

Query: 90  NSRISFE---SYFDQIIRK---SGDFDYRKITTKHIRSGVESRKH----TPSSAIQFLTS 139
            +   +E    Y ++ I+K     D     +    I       K       +SAI  L +
Sbjct: 132 KTVQRYETTTRYLEEFIKKEYQLSDIALNNLEANFISKFDAFLKIEKGCAQNSAITRLKN 191

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLAF 196
           ++ + + A+  +++  +P  +  R K +       T ++++   +         Q R  F
Sbjct: 192 LKKIIRIALENDWIKKDP-FAYYRFKLEETDPEFLTMDEIKIILAKEFTIKRVEQVRDVF 250

Query: 197 EFLLYSGLRCSDSCRAGVQH-LQNN----IFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251
            F +++GL  SD      +H +++N          QKT  +  + +      +L      
Sbjct: 251 IFCIFTGLAFSDVKDLSPEHLVKDNKGELWIRKNRQKTKIMCNIPVLPVAASILDKYKDV 310

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS-ADAGATAHELM 308
            E          +   + + + K  A   G++K  S H  R   AT      G +   + 
Sbjct: 311 AE--CTGKLLPVLCNQRMNSYLKEIADVCGIHKNLSTHTARHSYATSVCLANGVSMENVA 368

Query: 309 ATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343
              G       + Y +  D+  L  K+ ++++S +
Sbjct: 369 KMLGHADTSVTKHYARVLDQNIL--KDMQKVNSCL 401


>gi|218260603|ref|ZP_03475830.1| hypothetical protein PRABACTJOHN_01493 [Parabacteroides johnsonii
           DSM 18315]
 gi|218224449|gb|EEC97099.1| hypothetical protein PRABACTJOHN_01493 [Parabacteroides johnsonii
           DSM 18315]
          Length = 406

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 46/275 (16%), Positives = 99/275 (36%), Gaps = 26/275 (9%)

Query: 90  NSRISFE---SYFDQIIRK---SGDFDYRKITTKHIRSGVESRKH----TPSSAIQFLTS 139
            +   +E    Y ++ I+K     D     +    I       K       +SAI  L +
Sbjct: 132 KTVQRYETTTRYLEEFIKKEYQLPDIALNNLEANFISKFDAFLKIEKGCAQNSAITRLKN 191

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLAF 196
           ++ + + A+  +++  +P  +  R K +       T ++++   +         Q R  F
Sbjct: 192 LKKIIRIALENDWIKKDP-FAYYRFKLEETDPEFLTMDEIKIILAKEFTIKRVEQVRDVF 250

Query: 197 EFLLYSGLRCSDSCRAGVQH-LQNN----IFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251
            F +++GL  SD      +H +++N          QKT  +  + +      +L      
Sbjct: 251 VFCIFTGLAFSDVKDLSPEHLVKDNKGELWIRKNRQKTKIMCNIPVLPVAASILDKYKDV 310

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS-ADAGATAHELM 308
            E          ++  + + + K  A   G++K  S H  R   AT      G +   + 
Sbjct: 311 AE--CTGKLLPVLSNQRMNSYLKEIADVCGIHKNLSTHTARHSYATSICLANGVSIENVA 368

Query: 309 ATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343
              G       + Y +  D+     K+ ++++S +
Sbjct: 369 KMLGHADTSVTKHYARVLDQN--IFKDMQKVNSCL 401


>gi|317483230|ref|ZP_07942225.1| phage integrase [Bifidobacterium sp. 12_1_47BFAA]
 gi|316915299|gb|EFV36726.1| phage integrase [Bifidobacterium sp. 12_1_47BFAA]
          Length = 387

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 58/343 (16%), Positives = 103/343 (30%), Gaps = 37/343 (10%)

Query: 11  VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
           VT+ +T  G+  Y  RK    +              + +              P      
Sbjct: 4   VTRYKTSKGENRY--RKPDSTQTDKRGFRRKIDAENWAAEHVTIAKATNSYVDPEDGKRR 61

Query: 71  LKWLISEYRKSAHWGSLAVNSRI-SFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RK 127
           +  L  ++ K   W      +R+ + E++      +  D     IT   +++ +      
Sbjct: 62  VGDLYEQWLKE-KWPFWKETTRVNATEAWRLYCEERWADRRIGTITRAEVQAWISDIIAS 120

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP--WTKEDMQQFKSF 185
               S  +   +M  + + AVR + +  NPC +VE PK      R    T   +  F   
Sbjct: 121 AGAPSVRRPYQTMLGICRMAVRDKLILDNPCENVELPKLPRRKSRRVYLTISRLLAFADE 180

Query: 186 WSEGSQ---PRLAFEFLL-YSGLRCSDSCRAGVQHLQNNIFSIKTQ-------------- 227
            S G      R A    L + GLR  ++     + L      +                 
Sbjct: 181 CSRGKHLGAERRALVLTLGFCGLRWGEAAALKARDLDFGRGVLHVGGNLVYVGARWVEGT 240

Query: 228 -KTGTIITVELP---DGFMKLLAMTPIGKETFFINNDKQKMNATQFSI---WFKAKATKA 280
            K      V +P      +K +       E  F +     +     +    W+       
Sbjct: 241 PKNSEERDVPMPLIVMEALKPMCGEREPDERVFRDLRGGPIMKQSAAKTTGWWYHALVCL 300

Query: 281 GVNK----SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
           G  K    + H +R  +A+++  AGA    L    G K     
Sbjct: 301 GWPKEEWPTPHDLRHTAASLAVHAGANVKALQRMLGHKNASMT 343


>gi|254818892|ref|ZP_05223893.1| site-specific tyrosine recombinase XerD [Mycobacterium
           intracellulare ATCC 13950]
          Length = 209

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 57/190 (30%), Gaps = 22/190 (11%)

Query: 156 NPCLSVERPKRKTEGIRPWTKEDMQQFKSFW--------SEGSQPRLAFEFLLYSGLRCS 207
           +   +V  P       +  T + +                   + R   E L  +G R S
Sbjct: 1   DVARAVRPPTPGRRLPKSLTVDQVLALLEGAGGDSPADGPLTLRNRALLELLYSTGARIS 60

Query: 208 DSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKLL-----------AMTPIGKETF 255
           ++    V  +       +   K G    V +    +  L           A    G    
Sbjct: 61  EAVGLDVDDVDTQARSVLLRGKGGKQRLVPIGRPAVAALDAYLVRGRSDLARRGRGTPAI 120

Query: 256 FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGW 313
           F+N    +++        +  A +AG+    S H +R   AT   + GA    +    G 
Sbjct: 121 FLNVRGGRLSRQSAWQVLQDAAERAGITSGVSPHMLRHSFATHLLEGGADVRVVQELLGH 180

Query: 314 KTVDQAETYT 323
            +V   + YT
Sbjct: 181 ASVTTTQIYT 190


>gi|169827113|ref|YP_001697271.1| tyrosine recombinase xerC [Lysinibacillus sphaericus C3-41]
 gi|168991601|gb|ACA39141.1| Tyrosine recombinase xerC [Lysinibacillus sphaericus C3-41]
          Length = 299

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 42/263 (15%), Positives = 89/263 (33%), Gaps = 23/263 (8%)

Query: 85  GSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLT 138
            + +V++   +ES        +++ G  D   +   H R  V      K   +S  + ++
Sbjct: 20  KNFSVHTVREYESDLLDFLAFLQREGINDLASVEYIHARLYVTKLYDEKRARASISRKIS 79

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194
           S+R  F++  RQ         S+  PK+++     + +E++ Q          +  +   
Sbjct: 80  SIRSFFRFLNRQYGFDDGAFRSLYHPKKESRLPNFFYEEELMQLFDANTGDDLKSLRNMA 139

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLL 245
             E L  +G+R S+     V+ +  +   I+    G    +          + D   +  
Sbjct: 140 ILELLYATGIRVSELTSIQVKDVDFHYSIIRVMGKGRKERIIPFGQFASLAMLDYIEQAR 199

Query: 246 AMT--PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAG 301
                    +  F+N    ++              KA ++     H +R   AT   + G
Sbjct: 200 PRLMKKTNHQQLFVNMRGGELTPRGVRHVLNEMIDKASLHTKIYPHMLRHTFATHLLNNG 259

Query: 302 ATAHELMATYGWKTVDQAETYTK 324
           A    +    G   +   + YT 
Sbjct: 260 ADLRTVQELLGHSHLSSTQVYTH 282


>gi|160944688|ref|ZP_02091915.1| hypothetical protein FAEPRAM212_02202 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443872|gb|EDP20876.1| hypothetical protein FAEPRAM212_02202 [Faecalibacterium prausnitzii
           M21/2]
          Length = 416

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 60/409 (14%), Positives = 115/409 (28%), Gaps = 101/409 (24%)

Query: 10  FVTKERTRHGKII------------YYFRK--GHGRRIRLPYPHESTFIPAYMSALTGST 55
           ++ + +   G+++            Y +R    +G+R  +           Y + L G  
Sbjct: 6   YMQRRKDNKGRVLKDGEVYRKSDGLYMYRWTAKNGKRHTI-----------YDATLEGLR 54

Query: 56  PKREYINSPRKKPT-------TLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSG 107
            K E I               TL  L   +RK+     L  ++  ++   +++ +  + G
Sbjct: 55  EKEEKIQHDLADGIRIPECSLTLNDLFELWRKNK--VGLKEHTFANYVYMYNRFVRDEIG 112

Query: 108 DFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMR----VLFKWAVRQEYVAINPCLSV-- 161
               + I    IRS           A+  L +++     +F  AV  EY+ +NP   V  
Sbjct: 113 MMKLKDIRKSDIRSYYNGIVRNGKMALNTLETIQNVLHQVFAVAVDDEYIRVNPTDGVLT 172

Query: 162 ---ERPKRKTEGIRPWTKEDMQQFK---SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ 215
                 + +T      T    Q F        +       F F+L +G R S++      
Sbjct: 173 AIKAAHQYETPKRHALTLPQQQAFLNFIKKTPKFQHWLPMFTFMLGTGCRISETVGLCWS 232

Query: 216 HLQ--NNIFSIK------------------TQKTGT-IITVELPDGFMKLLAMTPIG--- 251
            +   +   +I+                  T KT      + +     K L         
Sbjct: 233 DIDFESGFITIQHNLVYHDHEVGGCYFTMSTPKTAAGKRAIPILPEVRKALEQERTNQQE 292

Query: 252 ------------KETFFINNDKQKMNATQFSIWFKAKATK-----------------AGV 282
                        +  F+N   Q  N    +   K  +                      
Sbjct: 293 LELVCEYEIDGISDFVFLNRFGQPQNPQTVNRAIKRISVAHNEAELEKAEKEKREPQLLP 352

Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIR 330
             S H +R    T   +       +    G + +    E Y +     +
Sbjct: 353 PFSCHNLRHTFCTRLCENETNLKIIQDIMGHRDISTTMEIYAEATKEAK 401


>gi|331090315|ref|ZP_08339199.1| hypothetical protein HMPREF1025_02782 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330401450|gb|EGG81035.1| hypothetical protein HMPREF1025_02782 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 322

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 36/248 (14%), Positives = 84/248 (33%), Gaps = 14/248 (5%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS----SAIQFLTSMRVL 143
           +  +   +    + +  K  +   R+ITT+ IR+ +   +        +      ++   
Sbjct: 61  SERTIQYYRVTVEHLFSKM-NQSVRRITTEEIRTYLSDYQKINRCSNVTIDNIRRNISSF 119

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203
           F W   ++Y+  +P   + + K KT      T E +++ +   +E  +     + L  +G
Sbjct: 120 FSWLEEEDYILKSPMKRIHKIKTKTVVKSVITDEGIEKLRDNCAE-IRDLAIIDLLYSTG 178

Query: 204 LRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDG----FMKLLAMTPIGKETFFIN 258
           +R  +     ++ +       I   K      V           + +       E  F+ 
Sbjct: 179 IRVGELVNLNIEDIDLEGRECIVYGKGDKERRVYFDAKAKVHLKEYIEKRKDNSEALFVT 238

Query: 259 NDKQK--MNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKT 315
            D     +  +   I  +    +  +++   H  R+  AT + D G    ++    G   
Sbjct: 239 LDAPHDRLKISGVEIRLRQLGRQLKLDRIHPHKFRRTMATRAIDKGMPIEQVQKILGHSQ 298

Query: 316 VDQAETYT 323
           +D    Y 
Sbjct: 299 IDTTMQYA 306


>gi|313892498|ref|ZP_07826087.1| site-specific recombinase, phage integrase family [Dialister
           microaerophilus UPII 345-E]
 gi|313119077|gb|EFR42280.1| site-specific recombinase, phage integrase family [Dialister
           microaerophilus UPII 345-E]
          Length = 372

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 50/279 (17%), Positives = 106/279 (37%), Gaps = 32/279 (11%)

Query: 83  HWGSLAVNSRIS-----FESYFDQ-IIRKSGDFDYRKITTKHIRS----GVESRKHTPSS 132
           H+  L  N+        ++++ ++  I    D    +I    I       +  +K++P+S
Sbjct: 81  HFLELKKNTIKESTFTYYKTHIEKDFIPILKDTPISRIDVNKINQLLNYMLNVKKNSPTS 140

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCL-SVERPK-RKTEGIRPWTKEDMQQFKSFWSEGS 190
                T++  +FK A+ +  +  NP   S++  K R  + I P+TK+++    +   + +
Sbjct: 141 IKTKKTTLHAIFKQAIYESLITKNPVEFSIKLSKSRAKKEIIPFTKQEISSLLAASKDNN 200

Query: 191 ---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK----------TQKTGTIITV 235
                      ++ +G+R  +        +    N  +IK          T+ T +  T+
Sbjct: 201 SLYTLYPIIRLVIETGMRRGEVLGLHWDDIDYTKNTITIKRSVSSFGVTSTKTTSSYRTL 260

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSA 294
            +    +++L          F+N     ++    S  FK    + G+ N+  H +R  +A
Sbjct: 261 IVSKDTLEMLKKYKKHDTKVFVNAIYSYLSPNLLSKKFKILCDELGIVNQHFHNLRHTNA 320

Query: 295 TISADAGATAHELMATYGWKTVDQA-ETYTK---GADRI 329
           T   + G     +    G   +     TYT     AD+ 
Sbjct: 321 TWLINQGVDIATVSRRLGHSNISTTLNTYTHFIPEADKK 359


>gi|257469562|ref|ZP_05633654.1| phage integrase family protein [Fusobacterium ulcerans ATCC 49185]
 gi|317063801|ref|ZP_07928286.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185]
 gi|313689477|gb|EFS26312.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185]
          Length = 355

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 57/290 (19%), Positives = 101/290 (34%), Gaps = 42/290 (14%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHIRSGVES--- 125
           T + L   Y +      L  ++ ++ +   ++ I     D     IT   +R+   +   
Sbjct: 57  TFQSLYDLYIEDMQ-PRLREHTLLTKKKIIEKKILPFFKDMTLESITAVRVRAWQNTLLN 115

Query: 126 ---RKHTPSSAIQFLTS---MRVLFKWAVRQEYVAINPCLSVERP-KRKTEGIRPWTKED 178
              R + P S     T    +  +F +AVR   +  NPC       K++ E    WT E+
Sbjct: 116 GVTRHNNPYSQTYIRTICNQLTAIFNYAVRFHSMRENPCHRAGTIGKKRAEEKNIWTPEE 175

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT--------- 229
            ++F +          AF+ L ++GLR  +     ++ +     +I   K+         
Sbjct: 176 FEKFVALIEHKIPSYTAFQILFWTGLRIGELLALSIKDIDFENKAIVVNKSYQRLGSRDV 235

Query: 230 -------GTIITVELPDGFMKLLAM------TPIGKETFFINNDKQKMNATQFSIWFKAK 276
                      TV++ D  ++++         P   +  F            F    K  
Sbjct: 236 ITAPKTEKGKRTVDISDELLEIIEKYLKRLYKPKKTDRLF------PYTKHTFENDMKEY 289

Query: 277 ATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
           A KAGV K   H +R   A+   + G     +    G + V    ETYT 
Sbjct: 290 AVKAGVKKIRLHDLRHSHASFLFNNGIDIITIALRLGHEEVQTTLETYTH 339


>gi|330898878|gb|EGH30297.1| site-specific recombinase, phage integrase family protein
           [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 349

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 50/289 (17%), Positives = 102/289 (35%), Gaps = 26/289 (8%)

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119
           YI     +  TL+  +  Y  S    +    ++    S   ++I   G +    ++ + I
Sbjct: 50  YIQRSGSERMTLEAALKRYL-SDITPTKKPTTQRGETSKAKKLIEHLGKYSLAALSAEII 108

Query: 120 RSGVESR---KHTPSSAIQ-----FLTSMRVLFKWAVRQEY---VAINPCLSVERPKRKT 168
               + R   K    +A        L  +  LF  A+ QE+   +  NP L++ +P    
Sbjct: 109 AGYRDKRLNEKGRAGTASNNTVRLELALLSHLFTVAI-QEWGLGLTFNPVLNIRKPSPGE 167

Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSI 224
              R  + ++ ++  +  +  S P L       L +G+R ++          L+  I  +
Sbjct: 168 GRNRRLSADEERRLMAAVNRHSNPMLGWIVGIALETGMRSAEINTLRKPMVDLERRIVKL 227

Query: 225 KTQKTGTIITVELPDGFMKLLAMT------PIGKETFFINNDKQ--KMNATQFSIWFKAK 276
              K     TV L     +L          P   +  F     +        F+  + + 
Sbjct: 228 VDTKNDGQRTVPLSKRATELFKAAMANPARPGDCQLVFFGEPGKDKNRRPYAFTKIWGSL 287

Query: 277 ATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             + G+ +   H +R  + +   + G +  E+ A  G K++   + YT 
Sbjct: 288 VKELGLSDFRFHDLRHEAVSRLVEGGLSDQEVSAISGHKSMQMLKRYTH 336


>gi|239946786|ref|ZP_04698539.1| tyrosine recombinase XerC [Rickettsia endosymbiont of Ixodes
           scapularis]
 gi|239921062|gb|EER21086.1| tyrosine recombinase XerC [Rickettsia endosymbiont of Ixodes
           scapularis]
          Length = 305

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 46/283 (16%), Positives = 105/283 (37%), Gaps = 28/283 (9%)

Query: 70  TLKWLISEYRKSAHWG-SLAVNSRISFESYFDQIIR-----KSGDFDYRKITTKHIRSGV 123
           +++ LI++++K      + + ++ IS+ +     +       S       I T  IR   
Sbjct: 5   SIQELINKWQKYLVLQRNCSNHTVISYNNDLKHFLEFMNYYNSELVTINHIKTADIRLIR 64

Query: 124 ESRKH------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
                      T SS  + L++++  +++  +   +  +   S++ PK+     +  +++
Sbjct: 65  SWLAKRNCNNFTTSSISRGLSAVKNFYRFLEKTTQLNSHIIFSIKSPKKTKLLPKALSED 124

Query: 178 D-------MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
           D       ++++ +      + +     +  SGLR S++      HLQN  F     K  
Sbjct: 125 DVVISLEHIEEYGNVKWVELRNKALLVLIYASGLRISEALSITKLHLQNLEFIRIIGKGS 184

Query: 231 TIITVELPD-------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV- 282
               +            ++++L       E  F     +K+    F+          G+ 
Sbjct: 185 KERIIPWLPITKNLITKYLEILPYKLGDNEPIFRGKQGKKLQPPVFNRELIKLKHFYGLP 244

Query: 283 -NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            + +AH  R   A+   + GA    +    G K++   + YTK
Sbjct: 245 QHLTAHSFRHSFASHLLEHGADLRSIQELLGHKSLSTTQNYTK 287


>gi|254465304|ref|ZP_05078715.1| phage integrase [Rhodobacterales bacterium Y4I]
 gi|206686212|gb|EDZ46694.1| phage integrase [Rhodobacterales bacterium Y4I]
          Length = 292

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 42/265 (15%), Positives = 84/265 (31%), Gaps = 16/265 (6%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK--ITTKHIRSGVESRKHTPS 131
           L +   +      L    + S                        +  +  +  R  TP 
Sbjct: 9   LRARMIEDMRIKGLGDKCQKSHIRAIKDFAAFLRRSPDTATPDDLRAYQLHMTDRGVTPP 68

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-EGS 190
           +    + ++R  F+    +  +       ++   +  +    ++ E++          G 
Sbjct: 69  TYNARIIALRFFFETTCGRGEMKR----HMQFRTQPRKLPVVFSAEEVAALLQVAPGPGL 124

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLLA-- 246
           + R A      +GLR S+ C   V  + ++     ++  K      V L  G + LL   
Sbjct: 125 KYRAALSISYGAGLRASEVCNLKVSDIDSDRMLIHVEQGKGRKDRKVMLSPGLLNLLREY 184

Query: 247 -MTPIGKETFFINNDK-QKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATISADAG 301
                 +   F    K   +++ Q    F +    AG+ K   + H +R   AT   +AG
Sbjct: 185 WREARPEGWLFPGKPKINPVSSRQLHRAFSSAKLIAGIKKPGSTLHTLRHSFATHLLEAG 244

Query: 302 ATAHELMATYGWKTVDQAETYTKGA 326
                +    G   ++  E YT  A
Sbjct: 245 TDVRVIQVLLGHAKLETTERYTHVA 269


>gi|300215222|gb|ADJ79638.1| Phage integrase [Lactobacillus salivarius CECT 5713]
          Length = 381

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 56/307 (18%), Positives = 99/307 (32%), Gaps = 57/307 (18%)

Query: 67  KPTTLKWLISEYRK---------SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK 117
           K      ++ E+           +  +  L  N           +     D    KIT +
Sbjct: 66  KSGKFGDVLDEWLALHKETVKASTWQFIELRAN---------KHVRPYFKDMYVDKITLR 116

Query: 118 HIRSGVES-RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR---- 172
             +  V    K  P + +  ++ ++    +A+R   +  NP L V +PK++         
Sbjct: 117 QCQDFVNKTFKVAPVAYVYSVSIVKNTLDYALRLGMIESNPMLYVIKPKKQANISDNHGN 176

Query: 173 PWTKEDMQQFKSFWS-EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ------------- 218
            + K+++++F         +    F  L YSG+R  +        L              
Sbjct: 177 YYNKDELKKFLDVAKNTNLKKYALFRLLAYSGMRIGECLALTWHDLDYKNNTIAINKTLA 236

Query: 219 --NNIFSIKTQKTGTIITVELPD----------GFMKLLAMTPIG------KETFFINND 260
             NN   I+T KT     V   D             +   +  +G      K+  F N  
Sbjct: 237 RTNNGIKIQTPKTKASNRVISLDNETIQVLKMWQLEQRKQLLKVGINAMDSKQLIFSNGK 296

Query: 261 KQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
              +      +  K  A KAG++  + HG R   AT+   +G    ++ A  G   V   
Sbjct: 297 NSFIIVPTVRLAIKQIAKKAGIHSITTHGFRHTHATLLFASGLDIKQVQARLGHSNVQTT 356

Query: 320 -ETYTKG 325
              YT  
Sbjct: 357 LNIYTHA 363


>gi|253571485|ref|ZP_04848891.1| integrase [Bacteroides sp. 1_1_6]
 gi|251838693|gb|EES66778.1| integrase [Bacteroides sp. 1_1_6]
          Length = 420

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 37/228 (16%), Positives = 80/228 (35%), Gaps = 10/228 (4%)

Query: 110 DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
           D +    +    G +    + ++A  + + ++   K A   EY+ ++    V+      +
Sbjct: 182 DIKMFLLRAPMGGNKKGTISQNTASTYFSILKAGLKQAFIDEYLTVDISAKVKGITNIEK 241

Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSI- 224
                T  ++Q       +    + AF F + +GLR SD      + +    +    ++ 
Sbjct: 242 PRVALTMNEVQMLVDTPCKDDVLKRAFLFSILTGLRHSDIQTLKWKQIQQTSKGTWQAVV 301

Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284
             QKT       +    ++L  + P   E            A+  S   K     +G+ K
Sbjct: 302 IQQKTKRPDYKPVTQQALQLCGIRPDDDEALVFEGLTD---ASWISRPLKVWIEASGIKK 358

Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
             + H  R   A++  + G   + + +  G   V   + YT   +  +
Sbjct: 359 HITFHCGRHSYASLLLENGVDIYTIKSLMGHTNVKTTQIYTHIVNEQK 406


>gi|237740351|ref|ZP_04570832.1| conserved hypothetical protein [Fusobacterium sp. 2_1_31]
 gi|294782552|ref|ZP_06747878.1| integrase/recombinase, phage integrase family [Fusobacterium sp.
           1_1_41FAA]
 gi|229422368|gb|EEO37415.1| conserved hypothetical protein [Fusobacterium sp. 2_1_31]
 gi|294481193|gb|EFG28968.1| integrase/recombinase, phage integrase family [Fusobacterium sp.
           1_1_41FAA]
          Length = 329

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 37/277 (13%), Positives = 94/277 (33%), Gaps = 15/277 (5%)

Query: 59  EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH 118
           +   + R +   +++L   +  + H    +  S   +++  + + +K  D   + ITT  
Sbjct: 40  KKEGADRDEKQNIEYL-EAFLSAKHVEGCSRKSLKYYKATIENLFKKI-DKSIKHITTND 97

Query: 119 IRSGVESRKHTPSS----AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
           +R  +++ +   ++               F W   ++Y+  +P   + + K  T     +
Sbjct: 98  LREYLDNYQKEGNASKITIDNIRRIFSSFFAWLEEEDYILKSPVRRIHKVKTGTVVKETY 157

Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTII 233
           + E M+  +       +     + L  +G+R  +  +  ++ +       +   K     
Sbjct: 158 SDEAMEIMRDNCKS-LRDLAIIDILASTGMRVGELVKLNIEDIDFEGRECVVFGKGDKER 216

Query: 234 TVELPDG----FMKLLAMTPIGKETFFIN--NDKQKMNATQFSIWFKAKATKAGVNK-SA 286
            V             L          F++     +++  +   I  +    K  + K   
Sbjct: 217 KVYFDARTKIHLHNYLKTRDDDNSALFVSLLKPHKRLQISGVEIMLRELGKKLNITKVHP 276

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           H  R+  AT + D G    ++    G + +D    Y 
Sbjct: 277 HKFRRTLATKAIDKGMPIEQVQQLLGHQKIDTTLQYA 313


>gi|60680662|ref|YP_210806.1| putative bacteriophage integrase [Bacteroides fragilis NCTC 9343]
 gi|60492096|emb|CAH06859.1| putative bacteriophage integrase [Bacteroides fragilis NCTC 9343]
          Length = 371

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 45/290 (15%), Positives = 96/290 (33%), Gaps = 35/290 (12%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRK--------SGDFDYRKITTK---------- 117
            +Y+  A +       R     +  +             G   + +I             
Sbjct: 87  DKYKLKADFLEY---YRKQLRKHDQKWEFVYLHFNNFVHGKCTFEEIDIDLCNKFREYLL 143

Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
             +    + + T +SA  + ++ R   K   R   +  N    +E+ + +       + E
Sbjct: 144 SAKKLRRNGRITRNSASGYWSTFRGFLKILYRNGMIKTNVNDFLEKIETEDVMKEALSVE 203

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-----QNNIFSIKTQKTGTI 232
           ++ +      +    + A  F   + LR SD      + +           I TQK    
Sbjct: 204 ELYKLAETPCKKPILKTASLFSCMTSLRISDILSLCWEDIVDYSAGGKCVHIITQKNKAE 263

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290
             + + +  + L+  +   K   F     + +  +   I  K     AG+ K  + H  R
Sbjct: 264 DIIPISEEALGLIGYSSEKKGLVF-----KGLMRSWTQIPMKEWIRSAGITKNITFHSYR 318

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
           +  AT+ A AG     + +    K++   + Y K  D  +   + S++I+
Sbjct: 319 RTFATLQAAAGTDIRTIQSIMAHKSITTTQRYIKVVDANKR--EASKKIT 366


>gi|324325058|gb|ADY20318.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 385

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 46/354 (12%), Positives = 101/354 (28%), Gaps = 48/354 (13%)

Query: 13  KERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
             R R+ K  Y  R     + +               A      +     + +    T  
Sbjct: 3   SFRKRNDKWEYRIRYKEMGKYKETSRGGFKTKKEAQLAAAKVEERIANGGNIQDNKVTFN 62

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
             + E+  +   G+++  +   +E      I+   G+   +++T    +  + +     S
Sbjct: 63  EYMYEWLNTFKKGNVSPRTYTVYEKNIRLHILPAFGELKLKELTRIKYQKFINNLLEKYS 122

Query: 132 SAIQFLTSMRVLFKWAVR-----QEYVAINPCLSVE----RPKRKTEGIRPWTKEDMQQF 182
              + + ++ V    A+         +  NP   ++        K + I+ +  +++QQF
Sbjct: 123 K--KTVETINVTMHHALDTAVNELGILEKNPTTKIKLRTNHINPKQDEIKCYDIDELQQF 180

Query: 183 KSF---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ------------------NNI 221
            ++      G +    F FL  +GLR  +      + +                     I
Sbjct: 181 LNYILKEKGGFKYYSLFMFLSRTGLRIGECLALQWEDIDFEEQKLFVNKTLLSTKRNEGI 240

Query: 222 FSIKTQKTGTIITVELPDGFMKLLAMTP--------------IGKETFFINNDKQKMNAT 267
                +   +  T+ +    M  L                        F + D   M   
Sbjct: 241 IFGPPKNKSSKRTISIDPSTMSHLKKMKLEQNKQILKNGKYYKDHNFIFTHEDNSCMLHP 300

Query: 268 QFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
               + +    K      + HG R   A     +GA    +    G  ++D   
Sbjct: 301 STLKFLQQACKKGNFKYITLHGFRHTHAVHLLQSGANLKYVSERLGHSSIDMTA 354


>gi|209551233|ref|YP_002283150.1| site-specific tyrosine recombinase XerC [Rhizobium leguminosarum
           bv. trifolii WSM2304]
 gi|209536989|gb|ACI56924.1| tyrosine recombinase XerC [Rhizobium leguminosarum bv. trifolii
           WSM2304]
          Length = 311

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 49/278 (17%), Positives = 90/278 (32%), Gaps = 29/278 (10%)

Query: 82  AHWGSLAVNSRISFESYFDQIIRKS-GDF-------DYRKITTKHIRSGVESRKHTPSSA 133
           A    L+ ++  ++E    Q +    G         D R++     R+ + +R+   S A
Sbjct: 24  ARERRLSEHTLDAYERDTRQFLTFLTGHLAGPATLGDIRELRPADFRAFLAARRKQGSGA 83

Query: 134 IQF---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM-------QQFK 183
                 L  +R L ++  ++  V      ++  PK+     +P +            Q  
Sbjct: 84  RSLGRNLAGLRSLLRYLEKKGLVNAAGAGAIRSPKQPKSLPKPLSDTQAITVVSNEAQLH 143

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELP---- 238
                 ++       L   GLR S++       L+    +++ T K      V L     
Sbjct: 144 DEPWIAARDAAVMTLLYGCGLRISEALDLIPSDLKKGATTLRITGKGNKTRLVPLLSVVF 203

Query: 239 DGFMKLLAMTPIG---KETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFS 293
           D   K   + P      E  F      K+ A       +   +  G+    + H +R   
Sbjct: 204 DAVEKYRTLCPYDLEPGEPLFRGARGGKLQAAIIQRAMQKLRSAFGLPETATPHALRHSF 263

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           AT     G     +    G  ++   + YT G D  RL
Sbjct: 264 ATHLLAGGGDLRTIQELLGHASLSTTQVYT-GVDASRL 300


>gi|86359460|ref|YP_471352.1| site-specific tyrosine recombinase XerC [Rhizobium etli CFN 42]
 gi|86283562|gb|ABC92625.1| tyrosine site-specific integrase/recombinase protein [Rhizobium
           etli CFN 42]
          Length = 311

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 89/278 (32%), Gaps = 29/278 (10%)

Query: 82  AHWGSLAVNSRISFESYFDQIIRKS-GDF-------DYRKITTKHIRSGVESRKHTPSSA 133
           A    L+ ++  ++E    Q +    G         D R++    +R+ + +R+   S A
Sbjct: 24  ARERRLSEHTLDAYERDTRQFLTFLTGHLAGPATLGDIRELRPADLRAFLAARRRQGSGA 83

Query: 134 IQF---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK-------EDMQQFK 183
                 L  +R L +   ++  V      ++  PK+     +P +         D  Q  
Sbjct: 84  RSLGRNLAGLRSLLRHLEKKGLVNAAGAGAIRSPKQPKSLPKPLSDTQAITIVSDEAQLH 143

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPD--- 239
                 ++       L   GLR S++       L     +++ T K      V L     
Sbjct: 144 DEPWIAARDAAVMTLLYGCGLRISEALNLVPADLPKGATTLRITGKGNKTRLVPLLPVVF 203

Query: 240 -GFMKLLAMTPIG---KETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFS 293
               K  A+ P      E  F      K+ A       +      G+    + H +R   
Sbjct: 204 DAVEKYRALCPYDLESGEPLFRGARGGKLQAAIIQRAMQKLRGALGLPETATPHALRHSF 263

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           AT     G     +    G  ++   + YT G D  RL
Sbjct: 264 ATHLLAGGGDLRTIQELLGHASLSTTQVYT-GVDASRL 300


>gi|323175399|gb|EFZ60994.1| site-specific recombinase, phage integrase family [Escherichia coli
           1180]
          Length = 310

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 68/220 (30%), Gaps = 26/220 (11%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGR-----RIRLPYPHESTFIPAYMSALTGSTPKREYI 61
           LPP V            Y  K  G        R+     +     Y           E  
Sbjct: 86  LPPRVRS------NGYSYVWKPEGSTRTIGLGRVRKTSVAKVWQNY-----------ELE 128

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121
            +      T+  L   +  S  +  LA  ++  +  +   ++   G      + T+ +R 
Sbjct: 129 KAKLHNIMTVAKLWHMFMDSPAFTELAPRTQKDYRQHQKALLMVFGKVLADNVKTEQVRI 188

Query: 122 GVESRK-HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
            ++ R   + + A   L S+  ++ W   + YV  NPC  V +   K   +   T E   
Sbjct: 189 FMDKRGLESKTQANHELASLSRVYGWGYERGYVKNNPCKGVRKFSLKARTVYI-TDEQYA 247

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220
              +      Q R+A E       R  D      Q + + 
Sbjct: 248 AIYA--EAIPQLRIAMEISYLCAARLGDVLELKWQDIMDK 285


>gi|167772803|ref|ZP_02444856.1| hypothetical protein ANACOL_04185 [Anaerotruncus colihominis DSM
           17241]
 gi|167665281|gb|EDS09411.1| hypothetical protein ANACOL_04185 [Anaerotruncus colihominis DSM
           17241]
          Length = 526

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 39/291 (13%), Positives = 88/291 (30%), Gaps = 38/291 (13%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFE-SYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
               +  + ++     +   ++ ++E   +  II + G     ++  K ++      K  
Sbjct: 72  FGEWLDFWYQNYVKPQIRPTTQANYEAKIYQHIIPELGKIPLNQLAQKDLQQFYARMKTA 131

Query: 130 PSSAIQ--------------FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
                                  + R   + AV++  +  NP +  + P ++   ++   
Sbjct: 132 GRLIRTEQFGKGLSDSMVRGLHAACRSALEKAVQEGLIRTNPAVGCKLPPKRGREMQVLG 191

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT----GT 231
           +E++Q+F           L F   L +GLR  +        L     ++   K       
Sbjct: 192 REELQRFLIQAQAEGYFEL-FLLDLCTGLRRGELLALQWDDLDFRTGALTVNKQVYEVKG 250

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQ----------------KMNATQFSIWFKA 275
            + V +P     +  +         +   ++                 M         + 
Sbjct: 251 RLQVSVPKTRASIRRLVLPPGVVEVLRAYRETVDSRWMFPSPVKEDVPMTPGAVRRRLQI 310

Query: 276 KATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
              +AG  +   H +R   AT+S + G     L A  G  +     + YT 
Sbjct: 311 ILERAGCKRIRFHDLRHTFATLSLENGMDVKTLSAMLGHVSAATTLDIYTH 361


>gi|269138944|ref|YP_003295645.1| putative phage integrase protein [Edwardsiella tarda EIB202]
 gi|267984605|gb|ACY84434.1| putative phage integrase protein [Edwardsiella tarda EIB202]
          Length = 364

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 47/282 (16%), Positives = 93/282 (32%), Gaps = 31/282 (10%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RK 127
           ++   ++EY +   +  +A N+  +  S    +    G  +  ++TT+ I S +      
Sbjct: 68  SVSQWMAEYLRILGYRGVAANTLRARRSQIKAVQTVIGQKNIAQVTTRDIASLLHHYVLI 127

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              S+A    + +  LF+ A+    +  NP      P  + +  R  T+  +Q   +   
Sbjct: 128 GHLSAAGLMRSFLNALFREAIAAGLIDYNPVTQTRTPPIRVKRRR-LTETMLQTVYAQAL 186

Query: 188 EGSQPRLAF----EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL------ 237
           +    +       E  L +G R  D C    Q ++ +   +  +KTG  + + L      
Sbjct: 187 QLESYKPWLPRSIELALLTGQRREDLCALRWQDIREDKLWVIQRKTGARLAMTLDLHLQL 246

Query: 238 ---PDGFMKLLA--MTPIGKETFFINND-------KQKMNATQFSIWFKAKATKAGV--- 282
              P    ++LA    P   +    +            +     +  F     K G+   
Sbjct: 247 GDYPLRLREVLARCRLPGPSDYLLNSQRSRLNRRPGGALVPDTLTKGFSRLMDKCGLVQE 306

Query: 283 --NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
               S H +R   ++    A           G K     E Y
Sbjct: 307 IYPPSFHEIR-SLSSRMYQAQYGTEFCQRLLGHKNRHMTEKY 347


>gi|154505016|ref|ZP_02041754.1| hypothetical protein RUMGNA_02526 [Ruminococcus gnavus ATCC 29149]
 gi|153794686|gb|EDN77106.1| hypothetical protein RUMGNA_02526 [Ruminococcus gnavus ATCC 29149]
          Length = 288

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 34/274 (12%), Positives = 97/274 (35%), Gaps = 18/274 (6%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---TP 130
            + +  ++    +L   S   +++Y    + K  + + +++T + +R  + ++K      
Sbjct: 10  YLEQLEEAGKIRNLKDRSISCYKNYVSYFL-KYQNKNPKELTCQDVRVFLLAKKEEGLKA 68

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           ++   + +++R  ++  +   +      ++V R   + +     T  ++ +      +  
Sbjct: 69  TTLNLYNSAIRFFYRNVLHILWDD----ITVPRMILEHKLPTVLTASEIDRLLDAVDD-I 123

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE------LPDGFMKL 244
           + +  F  +  SG+R S+        +  +   I  + T   +           D   + 
Sbjct: 124 KYKAMFAVMYSSGMRVSEVIHLHYDDISRSKMQINVRDTKNRMDRYTILSKRCLDILTQY 183

Query: 245 LAMTPIGKETFFINND-KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301
                  +   F N      +  +      +       + K  + H +R   AT   + G
Sbjct: 184 WFEKGRPRGILFPNKFTGNYLTVSTLEQVMRRAVADTELPKAATPHCLRHSFATHLMEQG 243

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335
              H + A  G +     E Y   +++  +GI++
Sbjct: 244 IERHNIQALLGHRDPKSTEVYLHVSNKSLMGIQS 277


>gi|94968162|ref|YP_590210.1| phage integrase [Candidatus Koribacter versatilis Ellin345]
 gi|94550212|gb|ABF40136.1| phage integrase [Candidatus Koribacter versatilis Ellin345]
          Length = 454

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 44/270 (16%), Positives = 91/270 (33%), Gaps = 19/270 (7%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE 124
           K   T+  L   + ++A   ++  N+   ++      I+   G  +   IT + +++ + 
Sbjct: 150 KTAMTVSELHRRW-ENAELPTIKRNTAGYYQKILRCHILPTFGQREIGSITREDVQTFLA 208

Query: 125 SR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR--PWTKEDMQ 180
           S+  K++ ++      S+  +  WAV   ++  NPC  V  P  +   I+      E + 
Sbjct: 209 SQAGKYSRNTLRGMRVSLGRILTWAVNCAWLEKNPCSKVPLPHVEKGEIQRSILMTEQVT 268

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT---------QKT-G 230
                  E    R     L  +GLR  ++          +I  +            KT  
Sbjct: 269 AIADKLEE--PYRTLVLLLAVTGLRIGEAIGIKWSDFDGDILHVSRTIYDGKADSTKTAS 326

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS-AHGV 289
           +   + +P   +  + M   G+  F                + +  A   G+  +  H  
Sbjct: 327 SNRKLPIPAALISRMRMLGDGEFIFHSRAGSPVNPGNALKRYLRPAAKALGIRLTGWHDF 386

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQA 319
           R   AT    +G++   +    G   V   
Sbjct: 387 RHTQATQLLRSGSSPKVVSGILGHSDVGIT 416


>gi|154251910|ref|YP_001412734.1| integrase family protein [Parvibaculum lavamentivorans DS-1]
 gi|154155860|gb|ABS63077.1| integrase family protein [Parvibaculum lavamentivorans DS-1]
          Length = 326

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 46/307 (14%), Positives = 92/307 (29%), Gaps = 29/307 (9%)

Query: 53  GSTPKREYINSPRKKPTTLKWLISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGD--- 108
           G  P  +            +  I  +         ++  + I++     +      D   
Sbjct: 10  GGAPAPDDAARTIPASGDARTEIRNWYSHLMGERRMSEATLINYHRDLTRFFEFLVDHLG 69

Query: 109 -----FDYRKITTKHIRSGVESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
                 D  ++  +  R+ V  R+       S  + L+S+R  F++  R   ++     +
Sbjct: 70  GPATLKDLGRLELRDFRAFVSQRRKDGLQSRSLARMLSSVRSFFRFLDRTHVLSNASATA 129

Query: 161 VERPKRKTEGIRPWTK-------EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG 213
           +  PK      +P T        ++ +        G++       L   GLR S++    
Sbjct: 130 LRSPKLPHAIPKPLTAAGARELLDEAEIAHEEPWIGARDIAVLTLLYGCGLRVSEALGLN 189

Query: 214 VQHLQNNIFSIKTQKTGTIITVELPDGFM----KLLAMTPIG---KETFFINNDKQKMNA 266
                       T K G    V +           L + P G    +  F+ +   ++  
Sbjct: 190 RSEAPLKDVLRITGKGGKERVVPVLPAARMAVDDYLRLCPHGLAKDDPLFVGSRGARLGQ 249

Query: 267 TQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            Q          + G+    + H +R   AT     G     +    G  ++   + YT 
Sbjct: 250 RQVRETMTRLRRRLGLPESATPHALRHSFATHLLAGGGDLRSIQELLGHASLSTTQMYT- 308

Query: 325 GADRIRL 331
             D  RL
Sbjct: 309 EVDAARL 315


>gi|229136719|ref|ZP_04265374.1| Prophage LambdaBa04, site-specific recombinase, phage integrase
           [Bacillus cereus BDRD-ST196]
 gi|228646739|gb|EEL02919.1| Prophage LambdaBa04, site-specific recombinase, phage integrase
           [Bacillus cereus BDRD-ST196]
          Length = 378

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 43/307 (14%), Positives = 101/307 (32%), Gaps = 46/307 (14%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
           I+ Y K      L +    S++               + +  +   + ++ +  +  +  
Sbjct: 82  ITSYEKDMSLVRLYILPPFSYKKI----------KSIKPVMIQSYYAELKEKGLSNGTIS 131

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-GSQPR 193
                +R +FK AV  E +  N    V++P+ +   ++ W+ E+  +F  +  E   +  
Sbjct: 132 NIHRCLRCIFKHAVEWEIIHDNIMNKVKKPREEQGEMKTWSSEECNRFLQYLKEKNIKYH 191

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE 253
           + F   +Y+G+R  +      + +  +   I   K+       L     K  +       
Sbjct: 192 MFFLLAIYTGMRRGELLALTWKDIDFDNKRILVNKSLVKTEKGLFKAATKTKSSNRSISI 251

Query: 254 TFFINNDKQKMNATQFSIWFK-------------------------------AKATKAGV 282
           + F+    Q   + +   +F+                                   KAGV
Sbjct: 252 SSFVIGKLQSYYSYKKKEFFRWGIHLNEEAYIFTGNTIHSPLHIDAPHRFLNDHYKKAGV 311

Query: 283 NK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRIS 340
            +   H +R   AT+   AG     +    G  ++    + Y+       +  + +    
Sbjct: 312 PRIRIHDLRHTHATLMLQAGEHPKIVQDRLGHSSIQMTLDKYSHITQ--NMQQQAAENFE 369

Query: 341 SVVDSDD 347
           S++ S++
Sbjct: 370 SIIKSNE 376


>gi|299536245|ref|ZP_07049558.1| prophage Lp3 protein 1, integrase [Lysinibacillus fusiformis ZC1]
 gi|298728231|gb|EFI68793.1| prophage Lp3 protein 1, integrase [Lysinibacillus fusiformis ZC1]
          Length = 388

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 52/305 (17%), Positives = 103/305 (33%), Gaps = 52/305 (17%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132
            I++Y K+        ++ +    YF + I+   G +   KIT    +            
Sbjct: 81  WITQYEKTVE-----ESTFVKTVGYFKNHILPSMGSYRIEKITIAICQKHYNEWASKVKK 135

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS-- 190
           A    +  + +  +A+   ++  NP   VE   +  +     T+++ + F +     S  
Sbjct: 136 ARTIKSYAKKVLDFAIVHGFIQTNPFTHVET--KVKKAFTESTEDENENFYTKEELISFL 193

Query: 191 ---------QPRLAFEFLLYSGLRCSDSCRAGVQHL----------------QNNIFSIK 225
                    +    F  + Y+G+R S++       +                +     +K
Sbjct: 194 EKAKDHLNYKAYTLFRLIAYTGMRKSEALALTWNDVNFVENEITINKAIGRGKQTQLYLK 253

Query: 226 TQKTGTIITVELPDGFMKLLA---------------MTPIGKETFFINNDKQKMNATQFS 270
           T KTG   T++L +  + +L                 T    +  F N     +   Q  
Sbjct: 254 TTKTGKPRTIKLDETTLSILKEWNKLQKQQYIQLGINTLKKNQLMFSNTKNDFIQPGQVQ 313

Query: 271 IWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADR 328
            W  +   K  + K S HG+R    ++  +AGA+  E+    G   V    + YT    +
Sbjct: 314 KWMYSVQNKYTLKKVSPHGLRHTHCSLLFEAGASIKEVQDRLGHSDVKTTLDIYTHVTKK 373

Query: 329 IRLGI 333
            + G 
Sbjct: 374 AKEGA 378


>gi|170781199|ref|YP_001709531.1| tyrosine recombinase XerC [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|169155767|emb|CAQ00888.1| tyrosine recombinase XerC [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 315

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 48/310 (15%), Positives = 101/310 (32%), Gaps = 35/310 (11%)

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRK 113
           +    +P   P  L+  ISE+  S       A ++  ++ +    +   +   G      
Sbjct: 6   QPQRGAPAATP--LEADISEFATSMDRERGSAAHTVRAYSADLRDLAAHAARQGVTTSAG 63

Query: 114 ITTKHIRSGV---ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170
           +    +R  +      +  P++  +   ++R    W +R   V  +P + ++ P+  +  
Sbjct: 64  LDLDVLRDWLWRGSQARLAPATLARRSAAVRGFGAWLLRTGRVDADPAVRLKAPRAGSHL 123

Query: 171 IRPWTKEDM--------QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222
            R   +E M         Q         +   A E L  S LR S+     +  +  +  
Sbjct: 124 PRVLAREQMSALLADLAAQAADDDPAALRDLAAIELLYASALRVSELTGLDLGDVDASRL 183

Query: 223 SIKTQKTGTI-ITVELPDGFMKLLAM----------TPIGKETFFINNDKQKMNATQFSI 271
           +++    G     V       + L            TP      F+     ++ +     
Sbjct: 184 TVRVVGKGDRERVVPFGVPAAEALDAYVTRGRPALVTPRTGTALFLGARGGRLGSRAVYG 243

Query: 272 WFKAKATKAGVNKS----AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GA 326
                +  A +  S     H +R  +AT   D GA    +    G  ++   + YT    
Sbjct: 244 LV--ASLLADIPGSGPQGPHALRHTAATHLLDGGADLRTVQEMLGHASLGTTQIYTHVSI 301

Query: 327 DRIRLGIKNS 336
           +R+R   + +
Sbjct: 302 ERLRRSYEGA 311


>gi|15838723|ref|NP_299411.1| hypothetical protein XF2132 [Xylella fastidiosa 9a5c]
 gi|9107262|gb|AAF84931.1|AE004027_13 phage-related protein [Xylella fastidiosa 9a5c]
          Length = 226

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 36/205 (17%), Positives = 69/205 (33%), Gaps = 16/205 (7%)

Query: 133 AIQFLTSMRVLFKWAVRQEYVA-INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           A + ++    L+ WA  +      NPC  + R K     +      D   +++ +    +
Sbjct: 16  ANREVSVFSHLWNWARSKGITDLPNPCGGIRRNKATGRDVYV----DDTTYRAVYQAADR 71

Query: 192 P-RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250
             + A +    +G R SD      + + +    I   KTG  + + +      L+     
Sbjct: 72  TLKDAMDLAYLTGQRVSDVVSMDERQIIDGALEICQAKTGVKLAIAITGELAVLIKRIFD 131

Query: 251 GKE-------TFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATISADA 300
            K           ++    +++ T     F      AG+ K       +R  +AT  AD 
Sbjct: 132 RKRGLKLRSTRLIVDAKGLELSRTGLRYRFDKARVAAGIAKEVFQFRDLRAKAATDKADL 191

Query: 301 GATAHELMATYGWKTVDQAETYTKG 325
                +  A  G  +V   E Y + 
Sbjct: 192 AGDIRQAQAQLGHASVTMTEHYVRK 216


>gi|226326689|ref|ZP_03802207.1| hypothetical protein PROPEN_00542 [Proteus penneri ATCC 35198]
 gi|225204910|gb|EEG87264.1| hypothetical protein PROPEN_00542 [Proteus penneri ATCC 35198]
          Length = 237

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 35/235 (14%), Positives = 78/235 (33%), Gaps = 19/235 (8%)

Query: 61  INSPRKKPTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYR---KITT 116
           +N P   P TL   I ++ +       L+  +  ++      + +            + +
Sbjct: 1   MNQPIDIPETLSTAIEQFLRYIQVERRLSPVTVENYHRQLMALAQMMVAMKITQWISLES 60

Query: 117 KHIRSGVESRKHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
           +H+R  +     +   P+S     +++R    W V Q  + +NP   +  PK      + 
Sbjct: 61  QHVRMLLAKSNRSGLQPTSLALRFSALRSFLDWQVAQGMLEVNPAKGIRTPKSGRHLPKN 120

Query: 174 WTKEDMQQFKS---FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKT 229
              +++ Q  +         + R   E +  +GLR S+     +  +  N   ++   K 
Sbjct: 121 MDVDEVSQLMNIDLKDPLSVRDRTMLEVMYGAGLRLSELTNLNISDIDMNEGEVRVLGKG 180

Query: 230 GTIITVELPDGFMKLLAM--------TPIGKETFFINNDKQKMNATQFSIWFKAK 276
                V L    ++ L           P  K  F      ++++       F+  
Sbjct: 181 SKERKVPLGRKALEWLQNWFPIRELYAPEDKAVFISTQSGKRLSVRSVQKRFELW 235


>gi|294782426|ref|ZP_06747752.1| integrase/recombinase [Fusobacterium sp. 1_1_41FAA]
 gi|294481067|gb|EFG28842.1| integrase/recombinase [Fusobacterium sp. 1_1_41FAA]
          Length = 328

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 40/295 (13%), Positives = 93/295 (31%), Gaps = 44/295 (14%)

Query: 88  AVNSRISFESYFDQIIRKS--GDFDY---------RKITTKHIRSGV----ESRKHTPSS 132
           +  +   +  +    +     G+ D+         + I  + + + +    E RK   +S
Sbjct: 33  SEKTVKDYMFHLKDFLHFVYEGENDFSISEVIPLMQDIEKEDVEAYIVHLFEDRKLKKTS 92

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW--TKEDMQQFKSFWSEGS 190
               L++++ L+K          NP   ++  K           + +D+++    +   S
Sbjct: 93  VNTILSALKSLYKELESNGL--KNPVKYIKLFKVNRNIENVLKVSIDDIRKIIGLYKIDS 150

Query: 191 QPR----LAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDGFM 242
           + +         L Y+G+R  +      +H         F +   K+G  +   +    +
Sbjct: 151 EKKYRNITILYTLFYTGMRSKELLTLQFKHFLRREDEYFFKLVQTKSGKDVYKPIHKSLV 210

Query: 243 K-------------LLAMTPIGKETFFINN--DKQKMNATQFSIWFKAKATKAGVNKSAH 287
           K              L    + +   F  +  +   ++    ++  +        + S H
Sbjct: 211 KKLEEYRSYLMNMYSLDSKDLDEHYIFATSVLNNSPLSYRSLNVIIQDMGKLIEKDISPH 270

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
            +R   AT  +  GA   E+    G       E Y     R  L  K   ++  +
Sbjct: 271 NIRHAIATELSLNGADILEIRDFLGHSDTKVTEVYINA--RSVLEKKVLEKLPEI 323


>gi|229826012|ref|ZP_04452081.1| hypothetical protein GCWU000182_01376 [Abiotrophia defectiva ATCC
           49176]
 gi|229789754|gb|EEP25868.1| hypothetical protein GCWU000182_01376 [Abiotrophia defectiva ATCC
           49176]
          Length = 331

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 33/248 (13%), Positives = 81/248 (32%), Gaps = 14/248 (5%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH----TPSSAIQFLTSMRVL 143
           +  +   + +    ++ K+   + RKITT+ +R  +   +     +  +      ++   
Sbjct: 70  SERTIKFYRTTIKHLLSKT-KTNVRKITTEEMRKYLSDYQKWNNCSNVTIDNVRRNISSF 128

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203
           F W   ++Y+  +P   + + K KT      + E +++ +    E  +     + L  +G
Sbjct: 129 FSWLEEEDYILKSPMKRIHKIKTKTVVKSTISDEGIEKLRDNCKE-KRDLAIIDLLYSTG 187

Query: 204 LRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDG----FMKLLAMTPIGKETFFIN 258
           +R  +     +  +       I   K      V           + +          F+ 
Sbjct: 188 IRVGELVNLNIDDIDFEGRECIVYGKGDKERRVYFDAKAKVHLKEYVDTRSDTNSALFVT 247

Query: 259 --NDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKT 315
                 ++  +   I  +       + +   H  R+  AT + D G    ++    G   
Sbjct: 248 LDAPYDRLKISGVEIRLRELGRSLNIERIHPHKFRRSMATRAIDKGMPIEQVQKILGHSQ 307

Query: 316 VDQAETYT 323
           +D    Y 
Sbjct: 308 IDTTMQYA 315


>gi|239813909|ref|YP_002942819.1| integrase family protein [Variovorax paradoxus S110]
 gi|239800486|gb|ACS17553.1| integrase family protein [Variovorax paradoxus S110]
          Length = 356

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 41/290 (14%), Positives = 84/290 (28%), Gaps = 39/290 (13%)

Query: 74  LISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESR---K 127
            + +Y +       LA  +   +  +   +   + +      ++ T HIR  +       
Sbjct: 12  WVDKYLEHVRVERRLAARTVELYAIHLQALAANAAEAGLPLDRVQTAHIRRWMAQLHGAG 71

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
             P      L+  R  ++W   +  V  NP   V  PK      +    +D  +    + 
Sbjct: 72  REPRGIALVLSCWRSFYRWLGNEGLVGFNPVKDVHAPKAARPLPKALAVDDAVRLAELYD 131

Query: 188 E------GSQPRLAFEFLLYSGLRCSDSCRA--GVQHLQNNIFSIKT------QKTGTII 233
                   ++     E L   GLR S+         +       +         K     
Sbjct: 132 PEADPWTEARDGAIVEVLYGCGLRVSELTGLDARASNTARGWVDLDALEANVLGKGSKRR 191

Query: 234 TVELPDGFMKLLA-----------------MTPIGKETFFINNDKQKMNATQFSIWFKAK 276
            V +     + L                    P G    FI+    +M++       + +
Sbjct: 192 IVPIGSKAAEALRDWFAVRGECAALSTAALRDPAGAAALFISAKGVRMSSQAVWKLLRER 251

Query: 277 ATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           + KAG+      H +R   A+    + +    +    G   +   + YT+
Sbjct: 252 SLKAGLAAPVHPHMLRHSFASHVLQSSSDLRAVQELLGHANIATTQVYTR 301


>gi|146299694|ref|YP_001194285.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
 gi|146154112|gb|ABQ04966.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
          Length = 297

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 33/210 (15%), Positives = 79/210 (37%), Gaps = 17/210 (8%)

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ--QFKSFWSEG 189
           S  + + S++  +K+ ++ + + ++P L  +  K       P++++++    F      G
Sbjct: 70  SVNRKMASLKAFYKFLLKIKQIEVSPMLKHKALKTPKIVQIPFSEKEVSDLMFGVESPIG 129

Query: 190 S---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLL 245
               + +L  +    +G+R ++     ++++  +   +K   K      V L       +
Sbjct: 130 FEEVRDKLIVDLFYTTGMRRAELIGLMLKNVDLSSGVVKVLGKRSKERIVPLLPIVADQI 189

Query: 246 AM---------TPIGKETFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSAHGVRKFSA 294
            +           +  E FFI+    K++ +                V KS H +R   A
Sbjct: 190 NLYIKEREQLDQIVDSEYFFISKKGLKLSESFVYRLINCYFSRVSEKVKKSPHVLRHTFA 249

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324
           T   + GA  + +    G  ++   + YT 
Sbjct: 250 THLLNNGADLNSVKELLGHSSLASTQVYTH 279


>gi|228996473|ref|ZP_04156112.1| DNA integration/recombination/invertion protein [Bacillus mycoides
           Rock3-17]
 gi|228763105|gb|EEM12013.1| DNA integration/recombination/invertion protein [Bacillus mycoides
           Rock3-17]
          Length = 256

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 74/239 (30%), Gaps = 32/239 (13%)

Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
           ++  + +        +  + +  +R   + A+  E +  N     + PK   E +  W +
Sbjct: 2   QNYVNSLRDEGLKRGTIEKIIKVIRNSLEHAIDLELITKNVAAKTKLPKVDKEELTVWNE 61

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----------- 225
           +++Q F     + S+  + F   L +G+R  +      + +  +  ++            
Sbjct: 62  QEVQLFLKTAQD-SRYSIVFHMALVTGMRQGELLGLRWKDVDLDKGNLTISQTLSHDGKT 120

Query: 226 ---TQKTGTIITVELPDG-----FMKLLAMTPIGK----------ETFFINNDKQKMNAT 267
                KT + +   L          K  A+    K          +          +N  
Sbjct: 121 FLLGGKTKSSLRKILLPASTIAKLKKHRAVVLKEKLSQGEEYHDNDLVMCTPSGTPINPA 180

Query: 268 QFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
                  A   KA V K   H +R   AT+    G     +    G   +    +TY+ 
Sbjct: 181 NVRRSLNALIQKAAVPKIRFHDLRHTHATLLLAKGVNVKVISERLGHSNIKITLDTYSH 239


>gi|254462175|ref|ZP_05075591.1| phage integrase [Rhodobacterales bacterium HTCC2083]
 gi|206678764|gb|EDZ43251.1| phage integrase [Rhodobacteraceae bacterium HTCC2083]
          Length = 295

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 44/284 (15%), Positives = 90/284 (31%), Gaps = 18/284 (6%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           L +   +      ++  ++ +            G       T   +R+          S 
Sbjct: 9   LRTRMIEDMRIRGMSPKTQQTHIRAVRYFSEFIGRSPDTA-TPDELRAYQLHMTDAGVST 67

Query: 134 ---IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM-QQFKSFWSEG 189
                 + S+R  F     +E +       ++  ++  +     + E++     +    G
Sbjct: 68  GVFNARIVSLRFFFGMTCGREEMKR----FMQFRRKAKKLPVVLSVEEVGDLLAAVPGPG 123

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLLA- 246
            + R A      +GLR S+ C   +  + ++     +   K        L  G + LL  
Sbjct: 124 LKYRAALGISYGAGLRASEVCNLKISDIDSDRMLIHVDEGKNDKDRKAMLSPGSLDLLRD 183

Query: 247 --MTPIGKETFFINNDK-QKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301
                  +   F    K   ++  Q +  F +    AG+NK  + H +R   AT   +AG
Sbjct: 184 YWREARPEGWLFPGKPKIMALSPRQLNRAFTSAKHMAGINKPATLHTLRHSFATHLLEAG 243

Query: 302 ATAHELMATYGWKTVDQAETYTKGADR-IRLGIKNSRRISSVVD 344
                +    G   +     YT  A + IR  +     +  + D
Sbjct: 244 TDVRVIQVLLGHSKLSTTARYTHVATKTIRGTVSPYEMLEKLQD 287


>gi|296268973|ref|YP_003651605.1| integrase family protein [Thermobispora bispora DSM 43833]
 gi|296091760|gb|ADG87712.1| integrase family protein [Thermobispora bispora DSM 43833]
          Length = 292

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 39/265 (14%), Positives = 87/265 (32%), Gaps = 27/265 (10%)

Query: 85  GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLT 138
             L+ ++  ++      +   +R +G     ++    +R+ +        + ++  + + 
Sbjct: 13  RDLSPHTVRAYLGDVASLFAHLRATGRERIAELDITDLRAWLGEQHRAGLSRTTLARRIA 72

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FWSEGSQPRL 194
             R    +  R+ ++A +P   +   K +       T+E  Q   S       +  +   
Sbjct: 73  CARTFTAFCHRRGWLAHDPGPLLGTTKAERRLPAVLTQEQAQAALSPPVSGDPKELRDHA 132

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFMKLLAMTPIGK- 252
             E L  +G+R S+ C   +  +     +I+    G    TV       + L    +   
Sbjct: 133 IMELLYATGIRVSELCALDLGDVDRERNTIRVMGKGRKERTVPFGQPAARALDAWCVRGR 192

Query: 253 ---------ETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA----HGVRKFSATISAD 299
                       F+     +++           A  AGV  +     HG+R   AT   +
Sbjct: 193 PQWVRDGTPPALFLGVRGGRIDPGTVRRVV--HARLAGVPGAPGMGPHGIRHTMATHLLE 250

Query: 300 AGATAHELMATYGWKTVDQAETYTK 324
            GA    +    G  ++   + YT 
Sbjct: 251 GGADLRSVQEILGHASLATTQLYTH 275


>gi|188994781|ref|YP_001929033.1| tyrosine type site-specific recombinase [Porphyromonas gingivalis
           ATCC 33277]
 gi|188594461|dbj|BAG33436.1| tyrosine type site-specific recombinase [Porphyromonas gingivalis
           ATCC 33277]
          Length = 420

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 38/283 (13%), Positives = 92/283 (32%), Gaps = 26/283 (9%)

Query: 77  EYRKSAHWG---SLAVNSRISFESYFDQIIRKSGD-FDYRKITTKHIRSGVESRKHTPS- 131
            Y + A +    + + +  ++++   D +   +G+   + KI               P  
Sbjct: 132 SYFREAMYKRHKNSSTSILVNWKRAMDFLKMYAGENLPFFKIDNAFAEEYKRFLLTAPRG 191

Query: 132 ----------SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
                     +A  + +  +   K A    Y+ ++    ++  + +       T E++  
Sbjct: 192 GNKCGTISHNTASTYFSIFKAALKQAFIDGYLTVDISAKIKGIQEQESRREYLTVEELNT 251

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVEL 237
             S   +    + A  F   +GLR  D  +   + +  +          +KT  +  + +
Sbjct: 252 LASTPCDREVMKRAALFSALTGLRHCDIQKLKWKEINMDGEQPRLHFTQKKTKGVEYMPI 311

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSAT 295
            +  ++L     + ++  F +       +       K     AG+ KS   H  R   AT
Sbjct: 312 SEQALQLCGERGLPEQLVFEDLPDPSWISKPL----KRWIEAAGIKKSISFHCFRHSYAT 367

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIR-LGIKNSR 337
           +   +    + +    G   V   + Y K  D  +    +  +
Sbjct: 368 LQFASSTDIYTVSKMLGHTNVKTTQIYAKVVDEKKNKAAQAIK 410


>gi|256832233|ref|YP_003160960.1| integrase family protein [Jonesia denitrificans DSM 20603]
 gi|256685764|gb|ACV08657.1| integrase family protein [Jonesia denitrificans DSM 20603]
          Length = 333

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 45/242 (18%), Positives = 79/242 (32%), Gaps = 31/242 (12%)

Query: 114 ITTKHIRSGVES---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170
           IT + +R  +     +  + S+  +   S R  F W V +     +P   +  P   +  
Sbjct: 75  ITLEELREWLAHSLTQNLSRSTIARRGASARQFFAWLVERGIRHDDPSKRLTTPTPHSAL 134

Query: 171 IRPWTKEDMQQFKS-----FWSEGS------------QPRLAFEFLLYSGLRCSDSCRAG 213
               T   ++Q  +     +  E +            + R A E    SGLR ++     
Sbjct: 135 PHVLTVAQVKQLLAAVERVYLPETTDTNTELSRARTDRLRAAVELTYSSGLRIAELVSLN 194

Query: 214 VQHLQNNIFSIK-TQKTGTIITVEL-PDGFMKLLA--------MTPIGKETFFINNDKQK 263
           V  + +    I+ T K      V L       L          M    +E  F+     +
Sbjct: 195 VGDIDHEQRVIRVTGKGNKQRRVPLGLPALQALERWIAESRPIMQSTSEEALFLGVRGGR 254

Query: 264 MNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
            NA Q        A  A ++    H +R  +AT   + GA    +    G  ++   + Y
Sbjct: 255 WNARQVRDELNKAALHADLDVVRPHDLRHTTATHLLEGGADLRSVQEILGHSSLRTTQRY 314

Query: 323 TK 324
           T 
Sbjct: 315 TH 316


>gi|150402804|ref|YP_001330098.1| phage integrase family protein [Methanococcus maripaludis C7]
 gi|150033834|gb|ABR65947.1| phage integrase family protein [Methanococcus maripaludis C7]
          Length = 291

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 35/252 (13%), Positives = 85/252 (33%), Gaps = 16/252 (6%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWA 147
           +++   + ++     +       +  +          ++  + ++ + +LT + V F + 
Sbjct: 28  SLSYNKNLKNIILNFMEFIKKDSFMNVEVSDAIFYYNNKSCSKNTKLSYLTYLNVFFDFC 87

Query: 148 VRQEYVAINPCLSV-ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRC 206
           V   Y+A NP     +  K   +     T++  +   S   +  + R  + FL+ +GLR 
Sbjct: 88  VDNNYIAKNPISKYRKSMKPSKKERVYLTEKHQELVFSRLKD-FEFRFMYVFLVQTGLRR 146

Query: 207 SDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMT--------PIGKETFF 256
            +        +   + I  +K  K      V + D     L           P+  +++F
Sbjct: 147 GEFLNLKFIDVDLDDRIIHVKGGKGDKYRFVPISDELYMYLKRWNYERALRYPV-DDSYF 205

Query: 257 INNDKQKMN---ATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGW 313
           ++   ++ +      FS +         +  + H +R   AT   +       L    G 
Sbjct: 206 VSKKGKRQSNKIYASFSEYIDRAVPNLHIRVTPHILRHTFATNCINKKMDLKTLSLILGH 265

Query: 314 KTVDQAETYTKG 325
           + +     Y   
Sbjct: 266 EDIATTSIYLHK 277


>gi|300772355|ref|ZP_07082225.1| integrase [Sphingobacterium spiritivorum ATCC 33861]
 gi|300760658|gb|EFK57484.1| integrase [Sphingobacterium spiritivorum ATCC 33861]
          Length = 413

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 64/325 (19%), Positives = 115/325 (35%), Gaps = 45/325 (13%)

Query: 57  KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISF---ESYFDQIIR-KSG--DFD 110
           K  Y+    ++  TL  L+  Y K      LA  +  ++   E+Y  + I+ K G  D  
Sbjct: 100 KSVYLGEDIEETMTLLKLVE-YHKQVAVSKLAPGTMKNYYTTETYIQKFIKQKYGKKDIP 158

Query: 111 YRKITTK---HIRSGVESRK----HTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLS 160
             ++  +      + +   K    H P +     + +  +R +   AV  +++  +P   
Sbjct: 159 LDELNYRFILDFENFLNDYKPKDHHKPINNNGVMKHMERLRKMVNLAVTMDWLVRDPFAK 218

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL-----AFEFLLYSGLRCSDSCRAGVQ 215
            +    K E     +KE++    +     S  RL      F F  Y+GL   D      +
Sbjct: 219 YKLRFEKVERGH-LSKEELTVLLN--KSFSIERLQSVSDMFIFSCYTGLAYIDIFNLTPE 275

Query: 216 HLQNN-----IFSIKTQKTGTIITVELPDGFMKLL-----AMTPIGKETFFINNDKQKMN 265
           ++          + K QKT T + V L      LL             T F     Q+MN
Sbjct: 276 NISKGIDGKDWLTTKRQKTDTTVRVPLLPEASDLLKKYRGHPVAEANGTIFPVISNQRMN 335

Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSAT-ISADAGATAHELMATYGWKTVDQAETY 322
                 + K  A   G+NK  + H  R   AT ++   G     +    G  ++   + Y
Sbjct: 336 G-----YLKEIAEICGINKNLTFHLARHTFATTVTLSNGVPIESVSKMLGHTSIRTTQIY 390

Query: 323 TKGADRIRLGIKNSRRISSVVDSDD 347
            K  +      ++  ++   + S D
Sbjct: 391 AKVLEHKL--SEDMHKLEVRMASQD 413


>gi|262067553|ref|ZP_06027165.1| integrase/recombinase [Fusobacterium periodonticum ATCC 33693]
 gi|291378728|gb|EFE86246.1| integrase/recombinase [Fusobacterium periodonticum ATCC 33693]
          Length = 328

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 40/295 (13%), Positives = 93/295 (31%), Gaps = 44/295 (14%)

Query: 88  AVNSRISFESYFDQIIRKS--GDFDY---------RKITTKHIRSGV----ESRKHTPSS 132
           +  +   +  +    +     G+ D+         + I  + + + +    E RK   +S
Sbjct: 33  SEKTVKDYMFHLKDFLHFVYEGENDFSISEVIPLMQDIEKEDVEAYIVHLFEDRKLKKTS 92

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW--TKEDMQQFKSFWSEGS 190
               L++++ L+K          NP   ++  K           + +D+++    +   S
Sbjct: 93  VNTILSALKSLYKELESNGL--KNPVKYIKLFKVNRNIENVLKVSIDDIRKIIELYKIDS 150

Query: 191 QPR----LAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDGFM 242
           + +         L Y+G+R  +      +H         F +   K+G  +   +    +
Sbjct: 151 EKKYRNITILYTLFYTGMRSKELLTLQFKHFLRREDEYFFKLVQTKSGKDVYKPVHKSLV 210

Query: 243 K-------------LLAMTPIGKETFFINN--DKQKMNATQFSIWFKAKATKAGVNKSAH 287
           K              L    + +   F  +  +   ++    ++  +        + S H
Sbjct: 211 KKLEEYRSYLMNMYSLDSKDLDEHYIFATSVSNNSPLSYRSLNVIIQDMGKLIEKDISPH 270

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
            +R   AT  +  GA   E+    G       E Y     R  L  K   ++  +
Sbjct: 271 NIRHAIATELSLNGADILEIRDFLGHSDTKVTEVYINA--RSVLEKKVLEKLPEI 323


>gi|239983801|ref|ZP_04706325.1| integrase [Streptomyces albus J1074]
 gi|239983807|ref|ZP_04706331.1| integrase [Streptomyces albus J1074]
 gi|291455603|ref|ZP_06594993.1| phage integrase [Streptomyces albus J1074]
 gi|291455609|ref|ZP_06594999.1| phage integrase [Streptomyces albus J1074]
 gi|291358552|gb|EFE85454.1| phage integrase [Streptomyces albus J1074]
 gi|291358558|gb|EFE85460.1| phage integrase [Streptomyces albus J1074]
          Length = 385

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 65/371 (17%), Positives = 123/371 (33%), Gaps = 46/371 (12%)

Query: 11  VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT- 69
           VT+ +    +   Y     G R+R  + + ST+  A  +   G   ++E    P    T 
Sbjct: 12  VTRRKDGRYQGAAYVTNTDGHRVR-KFVYGSTYDEA--AEKLGKLQEQERNGVPVPSRTW 68

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH 128
           +L   ++ + +     +   N+ + +ES     ++   G     ++T   +RS +   K 
Sbjct: 69  SLGEWLAYWLEHIVKPNREHNTYVKYESKVRLYLVPHLGMKPMARLTPAQLRSFMAELKR 128

Query: 129 T---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           T   P++  + L  +R     AVR+E +  N    V+ PK   +  +PW+  +   F   
Sbjct: 129 TEVPPAARFEVLRVLRNALNRAVREELLTRNVAELVDMPKVTKKEAKPWSAREAIAFLRS 188

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII------------ 233
                +   A   +L  GLR S+      Q +  +       K    +            
Sbjct: 189 ARAH-RLYAACVLVLVLGLRRSEVLGLRWQDIDFDQRQFTPLKQVQRVKGIGLVLKDLKT 247

Query: 234 -----TVELPDGFMKLLA-----------------MTPIGKETFFINNDKQKMNATQFSI 271
                 + LP+   + L                      G++  F +     ++   FS 
Sbjct: 248 ESSHAVLPLPEFCARALKERRELQDLERRIVGDAWSQEAGQDLIFSSERGGPIDPVGFSR 307

Query: 272 WFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGA-DR 328
            F A   +AGV + +    R    T+ A          A      +    + YT    D 
Sbjct: 308 TFNALVKRAGVRRITVRLARHTCGTLLAFLKVHPKVAQAILRHSQISMTMDVYTHVVGDG 367

Query: 329 IRLGIKNSRRI 339
            R  +     +
Sbjct: 368 EREAVTMLAEL 378


>gi|323137229|ref|ZP_08072308.1| integrase family protein [Methylocystis sp. ATCC 49242]
 gi|322397587|gb|EFY00110.1| integrase family protein [Methylocystis sp. ATCC 49242]
          Length = 316

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 46/280 (16%), Positives = 90/280 (32%), Gaps = 36/280 (12%)

Query: 85  GSLAVNSRISFESYFDQIIRKS-----GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
              A N++ ++       I           D      +   + +E R  + ++  + +++
Sbjct: 20  RGAAQNTQDAYRRDLADYIDFLRGQGTNPDDVTSDGVRAYLASLEPRGMSAATVARRISA 79

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS-------QP 192
           +R   K+     +   +P  ++E P+R        +  ++ +  S   EG        + 
Sbjct: 80  IRQFHKFLYVDRHRGDDPAAALEGPRRVRSAPGVMSVAEVDRLLSVAREGLDDEKRPLRE 139

Query: 193 RLA-------FEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMK 243
           RL         E L  +GLR S+           ++   +I+  K G      L D    
Sbjct: 140 RLRAARLYALLETLYATGLRVSELVSLPKSAARARDPFITIR-GKGGRERLAPLTDRAKS 198

Query: 244 LLA-----------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGV 289
            LA               G   F  ++D   +    F+   K     AG++ +    H +
Sbjct: 199 ALADYRKLLDATAPGLAEGPFLFPADSDSGHLTRQAFARDLKMLGVVAGLSAAQVHPHAL 258

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           R   A+     GA    +    G   +   + YT   D  
Sbjct: 259 RHAFASHLLQNGADLRVVQELLGHADISTTQIYTHVLDER 298


>gi|299536758|ref|ZP_07050066.1| tyrosine recombinase xerC [Lysinibacillus fusiformis ZC1]
 gi|298727770|gb|EFI68337.1| tyrosine recombinase xerC [Lysinibacillus fusiformis ZC1]
          Length = 299

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 42/263 (15%), Positives = 89/263 (33%), Gaps = 23/263 (8%)

Query: 85  GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLT 138
            + +V++   +ES     +   +  G  D   +   H R  V      K   +S  + ++
Sbjct: 20  KNFSVHTVREYESDLLDFLTFLQTEGIDDLASVEYIHARLYVTKLYDEKRARASISRKIS 79

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194
           S+R  F++  RQ  +      S+  PK+++     + +E+++Q          +  +   
Sbjct: 80  SIRSFFRFLNRQYGLDDGAFRSLYHPKKESRLPNFFYEEELKQLFDANTGDDLKSLRNIA 139

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLL 245
             E L  +G+R S+     V+ +  +   I+    G    +          + D   +  
Sbjct: 140 ILELLYATGIRVSELTSIQVEDVDFHYSIIRVMGKGRKERIIPFGQFASLAMQDYIEQAR 199

Query: 246 AMT--PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAG 301
                       F+N    ++              KA ++     H +R   AT   + G
Sbjct: 200 PRLMKKTNHLQLFVNMRGGELTPRGVRHILNEMIDKASLHTKIYPHMLRHTFATHLLNNG 259

Query: 302 ATAHELMATYGWKTVDQAETYTK 324
           A    +    G   +   + YT 
Sbjct: 260 ADLRTVQELLGHSHLSSTQVYTH 282


>gi|218754387|ref|ZP_03533183.1| integrase [Mycobacterium tuberculosis GM 1503]
 gi|289762820|ref|ZP_06522198.1| integrase [Mycobacterium tuberculosis GM 1503]
 gi|289710326|gb|EFD74342.1| integrase [Mycobacterium tuberculosis GM 1503]
          Length = 435

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 42/256 (16%), Positives = 87/256 (33%), Gaps = 10/256 (3%)

Query: 44  IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII 103
           + A+++A   S  K          P + +  I +Y  + +       +    ++      
Sbjct: 46  VEAFLAA-AKSQNKPPGPPPSLHAPPSWRRDIDDYLLNLNAAGQRPATIRLRKTVLCAAA 104

Query: 104 RKSGDFDYRKITTKHIRSGVESRKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162
              G      +T +H+   +  ++H +P     + +++R  F WA   + V      S+ 
Sbjct: 105 HGLG-RPPADVTAEHLLDWLGKQQHLSPEGRKTYRSTLRGFFVWAYEMDRVRDYVADSLP 163

Query: 163 RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222
           + +   +  RP   +  Q   +      +  L       +GLR +++ +A    L +   
Sbjct: 164 KVRCPKQPPRPAGDDVWQAALAKADR--RIELMIRLAGEAGLRRAEAAQAHTGDLMDGGL 221

Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
            +   K G    V + D    L+  TP G    F N     + A                
Sbjct: 222 LLVHGKGGKRRIVPISDYLAALIRDTPHG--YLFPNGTGGHLTAEHVGKLVSRALPG--- 276

Query: 283 NKSAHGVRKFSATISA 298
           + + H +R   AT + 
Sbjct: 277 DATMHTLRHRYATRAY 292


>gi|197301291|ref|ZP_03166376.1| hypothetical protein RUMLAC_00022 [Ruminococcus lactaris ATCC
           29176]
 gi|197299609|gb|EDY34124.1| hypothetical protein RUMLAC_00022 [Ruminococcus lactaris ATCC
           29176]
          Length = 411

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 56/394 (14%), Positives = 111/394 (28%), Gaps = 74/394 (18%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEY 78
           G+ +Y +    GRR    Y +    +            + + ++       T+ ++   Y
Sbjct: 24  GRYVYTYTDPLGRR---KYVYTQDLVTLREKEAQLMKDQMDGLDIYVAGKATINFVFDRY 80

Query: 79  RKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFL 137
               +  +L   ++ ++   +D+ I    G  +  +I    +              I  L
Sbjct: 81  MSLKN--NLKPTTKSNYLYMYDRFIRDTFGKRNIAEIKYSDVVQFYNHLIEKQELKINTL 138

Query: 138 TSMRVL----FKWAVRQEYVAINPCLSV-----ERPKRKTEGIRPWTKEDMQQFKSF--- 185
            ++  L    F+ AVR + +  NP   V     +    KT      T    + F  +   
Sbjct: 139 ETIHTLLHPTFQLAVRDDIIRKNPTDGVMAELKKNLGMKTGVRHALTIPQQRAFMEYIAT 198

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIF--------------------SI 224
                     F   L +G R  +      + +                           I
Sbjct: 199 HPIYFHWWPIFTIFLGTGCRIGEVLGLRWEDINYEKRIISINHNLTYYPVGEDRASENHI 258

Query: 225 KTQKTGTII-TVELPDGFMKLLAM------------TPIGKET--FFINNDKQKMNATQF 269
            T KT   + T+ + D       M              I   T   F N     MNA   
Sbjct: 259 STPKTEAGMRTIPMLDTVKDAFEMIWEEQKENGWTDAEIDGMTGFVFCNRYGNIMNAQSV 318

Query: 270 SIWFKA--------KATKAGVNK---------SAHGVRKFSATISADAGATAHELMATYG 312
           +   K         +  +A             SAH +R    T   +       + +  G
Sbjct: 319 NRAIKRISSAYNATEEVEAKKEHREPVLLPDFSAHSLRHTFCTRLCERETNLKIIQSIMG 378

Query: 313 WKTVDQA-ETYTKGADRIRLGIKNSRRISSVVDS 345
            K +    + Y +  +  +   +    +++ +D 
Sbjct: 379 HKDIQTTMDIYAEATEEKK--QETFEHLAATMDV 410


>gi|197301719|ref|ZP_03166789.1| hypothetical protein RUMLAC_00445 [Ruminococcus lactaris ATCC
           29176]
 gi|197299159|gb|EDY33689.1| hypothetical protein RUMLAC_00445 [Ruminococcus lactaris ATCC
           29176]
          Length = 375

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 58/363 (15%), Positives = 117/363 (32%), Gaps = 61/363 (16%)

Query: 34  RLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRI 93
           ++  P  S    A  S         +     R+   TL     +Y ++    + +  +RI
Sbjct: 11  KISSPDSSEVFDASPSKTYHEQAYIDQTLRLREILKTLPAFTKDYFRAVE-PTTSARTRI 69

Query: 94  SFESYF---------------DQIIRKSGDFDYRKITTKHIRSGVESRK----------- 127
           S+                   +  I +    D  ++    I    E  K           
Sbjct: 70  SYAYDIRVFFHFLMEVNPHYKNYTIDQFTVQDLERLDPVDIEEYQEYLKVYKNEEDRQIT 129

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           +T     + ++++R  + +  +++ ++ NP L V+ PK   + I     +++     +  
Sbjct: 130 NTEKGLSRKMSALRSFYGYYFKRQIISKNPTLLVDMPKLHEKAIIRLDTDEIAMLLDYVE 189

Query: 188 EG----SQPRLAF------------EFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKT 229
            G    +  RLA+              LL +G+R S+     VQ +   NN   + T+K 
Sbjct: 190 HGGENLTGQRLAYYEKTKNRDLAILTLLLGTGIRVSECVGLDVQDVDFKNNGIKV-TRKG 248

Query: 230 GTIITVELPDGFMKLLAM-----------TPIGKETFFINNDKQKMNATQFSIWFKAKAT 278
           G  + V   +     L                 +   F++  +++M         K  A 
Sbjct: 249 GNEMVVYFGEEVEHALKTYLYTTRKSTVPLSGHENALFLSTQRKRMGVQAVENMVKKYAR 308

Query: 279 KAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK-GADRIRLGIK 334
           +   NK  + H +R    T         + +    G K V+   + Y     +R R    
Sbjct: 309 EVTPNKKITPHKLRSTYGTALYKETGDIYLVADVLGHKDVNTTKKHYAAIDENRRRRAAG 368

Query: 335 NSR 337
             +
Sbjct: 369 AVK 371


>gi|158520305|ref|YP_001528175.1| integrase family protein [Desulfococcus oleovorans Hxd3]
 gi|158509131|gb|ABW66098.1| integrase family protein [Desulfococcus oleovorans Hxd3]
          Length = 403

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 48/328 (14%), Positives = 105/328 (32%), Gaps = 32/328 (9%)

Query: 23  YYFRKGHGRRI--RLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP---TTLKWLISE 77
           +YFRK H  ++  R     +        +    +  +   +++P K      T   +  E
Sbjct: 21  FYFRKKHNGKVFKRSLNTTDKRTARDLRNFYLRNLVEYGQLDAPEKVDYDVITFGEVAKE 80

Query: 78  YRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF 136
           +  S H   +  ++   + S  +  I+    D    +IT   +       K     A   
Sbjct: 81  W-ASIHKKEVRYSTWPDYVSSMNGHILPNFKDMPIAEITYGDVLKFRSGLKVGAKRANNI 139

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196
           L  M+ +F +A R+  +  N    ++R   +   I P++ +++ +         QP L  
Sbjct: 140 LVPMKSVFDYADREGIIQDNVMRKIKRLSEEAPEIHPFSYDEVNRLLDAVHPWYQPYLI- 198

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNN-----IFSIK----------TQKTGTIITVELPDGF 241
               ++G+R  +           +        I+           +   +   ++     
Sbjct: 199 -VAFFTGMRAGEQNGLCWSDFLEDMQPEPRIFIRKTYVYKKDGIPKTKKSKRYIKCLPQV 257

Query: 242 MKLL---AMTPIGKETFFINNDKQKMNATQFSI-WFKAKATKAGVNKSA--HGVRKFSAT 295
           ++ L          +  F+  D ++M         +     KAG+         R   AT
Sbjct: 258 LEALSEQRKLTGKNKHIFLTIDGRRMTPDHIRKEVWIPALEKAGIEYRPPIQT-RHTFAT 316

Query: 296 ISADAGATAHELMATYGWKTVDQA-ETY 322
           +   AG     +    G  ++    + Y
Sbjct: 317 MMLSAGEDIGWVQNMLGHSSLQMIFQRY 344


>gi|114797932|ref|YP_758814.1| tyrosine recombinase XerD [Hyphomonas neptunium ATCC 15444]
 gi|114738106|gb|ABI76231.1| tyrosine recombinase XerD [Hyphomonas neptunium ATCC 15444]
          Length = 309

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 38/269 (14%), Positives = 85/269 (31%), Gaps = 30/269 (11%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT---PSSAIQFLTSMR 141
              + N+  ++                   ++  + + +         PS+  + L+++R
Sbjct: 18  RGASPNTLDAYGRDLLDASE-FCHLRLVTASSSDLSAWLADLAARGMAPSTQARKLSAVR 76

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201
             F++  ++     +P   ++ P  + E     ++E++ +         + +   E L  
Sbjct: 77  RFFRFLFQEGDRKDDPTARLDGPSPEREVPDVLSREEVGRLIEACGNDKRLKCLVELLYG 136

Query: 202 SGLRCSDSCRAGVQHL----QNNIFS---IKTQKTGT--------IITVELPDGFMKLLA 246
           +GLR ++     V +L         S   I   K G            + L +      A
Sbjct: 137 AGLRATELVTLRVGNLPRRKAGQWMSADIIIRGKGGKDRLCPLGRAALIALSEWLEVREA 196

Query: 247 MTP------IGKETFFINNDKQ--KMNATQFSIWFKAKATKAGVNKS---AHGVRKFSAT 295
             P        +E F   +  +   +   +     +  A +AG+       H +R   AT
Sbjct: 197 SLPDNPLMRSKQEGFVFPSRGKEGHLTRRRLGQMLEDLAGEAGLRSERVYPHALRHAYAT 256

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTK 324
                GA    +    G   +   + YT 
Sbjct: 257 HLLQGGADLRVVQTLLGHADIATTQIYTH 285


>gi|239906151|ref|YP_002952890.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
 gi|239796015|dbj|BAH75004.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
          Length = 347

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 60/350 (17%), Positives = 108/350 (30%), Gaps = 26/350 (7%)

Query: 12  TKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALT-----GSTPKREYINSPRK 66
              R  +G     +R   G++    +        A           GS   R       +
Sbjct: 3   VHMRKNNGTYYVAYRNAEGKQTTKTFGKGREGRRAAQKFDKQVKDHGSVQPRTPEAISEE 62

Query: 67  KPTT----LKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRS 121
              T    L  L   Y  S      ++ +    +S+    +I         +I    I  
Sbjct: 63  VAVTGKLYLDQLAQMYINSRKVEGTSIRTLNEIKSFLKRHLIPVFAQRPVEEIKYDEIVK 122

Query: 122 GVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
            V       +P +  ++L+ ++ +FK+ V  + +  NP     +P+ K    +  T +D+
Sbjct: 123 IVAKAYENRSPVTRGRYLSYLKTVFKFGVEHDLIEKNPLRQWHKPREKPRDTK-LTVDDL 181

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLR--CSDSCRAGVQHLQ--NNIFSIKTQKTGTIITV 235
           QQ K+          A E     G+R   S+        +       ++   KT T  TV
Sbjct: 182 QQIKAAAEPHLA--WAIEVAWNLGVRTGPSELLALTWDDISWAEKTINVFATKTNTRRTV 239

Query: 236 ELPDG-FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKF 292
            L D    +L       +    +    +     Q S   +    +AG+      + VR  
Sbjct: 240 PLSDEFLARLQEKKATAQCERIVEYHGRP--VKQISRAMRTACRRAGITYPVVLYDVRHL 297

Query: 293 SATISADAGATAHELMATYGWKTVDQAE--TYTKGADRIRLGIKNSRRIS 340
            AT   + G     +    G  ++       Y    D  R  I    R+ 
Sbjct: 298 FATTLLNEGGDLSAVSKLMGHSSIQMTANNYYHLLGDEKRRTIARLPRLE 347


>gi|218782611|ref|YP_002433929.1| integrase family protein [Desulfatibacillum alkenivorans AK-01]
 gi|218763995|gb|ACL06461.1| integrase family protein [Desulfatibacillum alkenivorans AK-01]
          Length = 409

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 59/355 (16%), Positives = 114/355 (32%), Gaps = 52/355 (14%)

Query: 20  KIIYYFRKGHGRRI--RLPYPHESTFIPAYMSALTGST---------PKREYINSPRKKP 68
           +I Y F +  G++I  +    ++    PA  + +              +RE + + ++  
Sbjct: 29  RIYYIFYRKDGKQIEEKAGRQYQDDMTPARAAGIRAQRIQGKEATNEERREEVRAAKEAE 88

Query: 69  T---TLKWLISEYRKSAHWGSLA--VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
               TL  +  EY+  A    L   V  +  +ESY   +       + +++    +R  +
Sbjct: 89  AGRWTLDRIWEEYK--AQRPDLKGIVTDQNRYESYLQPVFGDKTPSEIQQLEVDRLRINM 146

Query: 124 ESRKH----------------------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV 161
            ++                        TP +    L  +R +  +  R+          +
Sbjct: 147 LTKPRKPPRFRNGKRMEKPKNGKLPPLTPQTVKNTLEILRRIINFGERKGLCEG-LGFKI 205

Query: 162 ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA--FEFLLYSGLRCSDSCRAGVQHLQ- 218
             PK         T + ++       E +   +A   +  LYSG+R  +  +    H+  
Sbjct: 206 TFPKVDNTKTEDLTPDQLRDLLKAIDEATNTEVAAIMKMALYSGMRRGELLKLQWDHVDF 265

Query: 219 -NNIFSIKTQKTGTIITVELPDGFMKLLA-MTPIGKETFFINNDKQKMNATQFSIWFKAK 276
                 I   K G    V L D    LL   +       F     ++    +        
Sbjct: 266 ERGFIHIVDPKGGASQKVPLNDASRALLENRSRTDSPYVFPGKGGKQRVCIRHEAN--KI 323

Query: 277 ATKAGVNKSA---HGVRKFSATISADAGA-TAHELMATYGWKTVDQAETYTKGAD 327
             KAG+ K     HG+R   A++ A +G    + L      K+    + Y    D
Sbjct: 324 KEKAGLPKDFRAMHGLRHTYASMLASSGKVDMYTLQKLLTHKSPQMTQRYAHLRD 378


>gi|317487260|ref|ZP_07946055.1| phage integrase [Bilophila wadsworthia 3_1_6]
 gi|316921450|gb|EFV42741.1| phage integrase [Bilophila wadsworthia 3_1_6]
          Length = 347

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 56/279 (20%), Positives = 101/279 (36%), Gaps = 29/279 (10%)

Query: 65  RKKPTTLKWLISEYR---KSAHWGSLAVNSRISFESYFDQIIRKSGD-FDYRKITTKHIR 120
           +    T  W + +     KS +W   A + +++  S F  I    G+     KIT   I 
Sbjct: 64  KDPDDTSGWTLKQAYDRTKSLYWEDSAWSYKVA--SNFKSISTYFGETMPIGKITLDDID 121

Query: 121 SGVES---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
             V +   + ++  +  + L  +  +F+ AV +  + + P   +   K     +R  T+E
Sbjct: 122 DYVNTLLTKGNSNGTINRKLAILSRIFRTAVERGKLEVVP--KIPLRKEAHHRVRFLTQE 179

Query: 178 DMQQF-KSFWSEGSQPRL-AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT--QKTGTII 233
           +   F K+F   G       F  LLY+G R  +  R   + +   + +I     K G   
Sbjct: 180 EENAFVKAFIQNGYNTHAEVFLILLYTGFRLGECWRIECRDINLELGTITAWKTKNGHPR 239

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK----AKATKAGVNKS---- 285
           T+ + D    +L          F   +  K+  T  + WF+          G+ K     
Sbjct: 240 TIPIVDKIRPILERK------IFEAGENGKLFPTADNRWFESAWNRIKRLLGLEKDVQLV 293

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            H +R   A+  A  G +   +    G   +     YT 
Sbjct: 294 PHALRHTCASRLAQRGVSMMVIKEWMGHSNIKTTMRYTH 332


>gi|89892756|ref|YP_516243.1| hypothetical protein DSY0010 [Desulfitobacterium hafniense Y51]
 gi|89332204|dbj|BAE81799.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 395

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 58/301 (19%), Positives = 111/301 (36%), Gaps = 53/301 (17%)

Query: 74  LISEYRKSAHWGSLAV-----NSRISFESYFD-QIIRKSGDFDYR--KITTKHIRSGVES 125
           L ++Y +   W + A       +   +++  D +I R   + +    ++T +HI+   +S
Sbjct: 66  LFTDYLQ--KWLTQAKPTIAKTTFKGYQTMLDGRISRYFTELNITLGEVTPQHIQDFHQS 123

Query: 126 ---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
                HTP++ I +   +R   + AV++E +  NP   V+RPK+     + ++ E+M   
Sbjct: 124 IFDEGHTPNTVIHYHAVLRRALQNAVKKEIIDSNPADRVDRPKKNVYHAQFYSAEEMMAL 183

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIK--------------- 225
               S+     +  +   Y GLR S+         +L+    SIK               
Sbjct: 184 FDEISDDPLE-ICVKLAAYYGLRRSEVLGLKWDAINLEQKTISIKHKVIEDTVDGKSIAV 242

Query: 226 ---TQKTGTI-ITVELPDGFMKLLAMTPIGKETF----------------FINNDKQKMN 265
                KT +   T+ L     KLL      +E +                 ++   + M 
Sbjct: 243 GEDVLKTKSSFRTLPLLPSVEKLLLAEKEKQEMYRKLFKRSYCRDYLDYICLDQAGKLMR 302

Query: 266 ATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYT 323
               +  F     KA + K   H +R   A++    G +  ++    G  T    A+ Y+
Sbjct: 303 PNYVTEHFSWALEKADLKKIRFHDLRHSCASLLLANGISMKQIQIWLGHSTFSTTADIYS 362

Query: 324 K 324
            
Sbjct: 363 H 363


>gi|300727313|ref|ZP_07060727.1| mobilizable transposon, int protein [Prevotella bryantii B14]
 gi|299775357|gb|EFI71953.1| mobilizable transposon, int protein [Prevotella bryantii B14]
          Length = 365

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 43/254 (16%), Positives = 93/254 (36%), Gaps = 28/254 (11%)

Query: 96  ESYFDQIIRKSGDFDYRKITTKHIRSGVE-----------SRKHTPSSAIQFLTSMRVLF 144
             +F++  +  G   +R I                      +K + +SA  +  +   + 
Sbjct: 111 RLHFERFCK--GQCKFRDINASLCERFRLYLLRAKGLQHTKKKLSKNSASAYFNAFLSIV 168

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGI-RPWTKEDMQQFKSF-WSEGSQPRLAFEFLLYS 202
            +A R   ++ +    +E+ K   +      +  +++Q  S  + +      A  F +Y+
Sbjct: 169 HFAYRDNILSEDYTTCIEKIKWNHDIPKEYLSSAEIKQLASTPYDDNPDVYRAGMFSIYT 228

Query: 203 GLRCSDSCRAGVQHLQNNI-----FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI 257
           GLR SD      +++ ++         + +KT T+I + L    +++L       + F  
Sbjct: 229 GLRRSDILALRWENIHHDRGRKAYIRFRIKKTRTLIQLPLSLPAIRVLGDPKSEGKIF-- 286

Query: 258 NNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKT 315
                 +  +  +I      +KA + K  + H  R   A    D G   + + A  G K 
Sbjct: 287 ----PMITESILTIHIPRWVSKARIRKHITFHCFRHTFAMQLLDKGVDIYTIAALLGHKQ 342

Query: 316 VDQAETYTKGADRI 329
           V   + Y K + + 
Sbjct: 343 VSSTQNYAKMSSKK 356


>gi|297588425|ref|ZP_06947068.1| tyrosine recombinase XerC [Finegoldia magna ATCC 53516]
 gi|297573798|gb|EFH92519.1| tyrosine recombinase XerC [Finegoldia magna ATCC 53516]
          Length = 326

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 33/203 (16%), Positives = 70/203 (34%), Gaps = 15/203 (7%)

Query: 140 MRVLFKWAVRQEYVAI-NPCLSVERPKRKTEGIRPWTKED------MQQFKSFWSEGSQP 192
           +R  +K+ +    + I NP   ++ PK+        T ++      +   +      ++ 
Sbjct: 101 IRTFYKYLINIRKLDIINPAELLDSPKKNIRQPVYLTLDESLNLLKVILREKDEEIKARD 160

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---ITVELPDGFMKLLAMTP 249
                  L  G+R S+     + H++ N   +  +        +     D     L + P
Sbjct: 161 YCITVLFLNCGMRLSELSSINIDHIKTNTLRVIGKGNKERTVYLNDMCLDALDNYLKIRP 220

Query: 250 -IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG-ATA 304
            I  +  FI+  + +M+        +      G +    S H +R  +AT+    G    
Sbjct: 221 EIDNDALFISKKRNRMSNRAIQYRIEHYLKAGGFDTSIYSVHKLRHTAATLMYQYGNVDI 280

Query: 305 HELMATYGWKTVDQAETYTKGAD 327
             L    G ++V   + YT   +
Sbjct: 281 KVLQEILGHESVSTTQIYTHVDN 303


>gi|320353544|ref|YP_004194883.1| integrase family protein [Desulfobulbus propionicus DSM 2032]
 gi|320122046|gb|ADW17592.1| integrase family protein [Desulfobulbus propionicus DSM 2032]
          Length = 311

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 46/269 (17%), Positives = 93/269 (34%), Gaps = 16/269 (5%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFK 145
             N++   +    ++IR       + IT+K I +  + R  +  PSS IQ L+ +  +++
Sbjct: 44  KRNTQRLDQEIGGRLIRYFDGKSLQTITSKDIAAYRDYRLQQVGPSSVIQDLSFLSCMYR 103

Query: 146 WA-VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA--FEFLLYS 202
            A +       +P   + RP      +   T + +     +       +L      LL++
Sbjct: 104 MARIEWGLDVNDPGAEIRRPSAPKNRLSLLTPKQIDTLLDYCCVSKSEKLYCYVLLLLHT 163

Query: 203 GLRCSDSCRAGVQH--LQNNIFSIKTQKTGTIITVELPDGFMKL---LAMTPIGKETFFI 257
            +R S+          +   +  +   KT     V +     K+   + +   G+  F  
Sbjct: 164 AMRPSEGAGLRWDQVLIGQGMIDLTETKTD-PRRVPMTRTIRKMFERMRVAGEGENGFVF 222

Query: 258 NNDKQKM---NATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGW 313
               +         F   F      AG+ N + +G+R  +A+     G     +    G 
Sbjct: 223 LPPGKGYRDQPHRYFRRSFDNACRYAGICNFTLYGLRHSAASYLIMNGVDIRTVAEIMGH 282

Query: 314 KTVDQAETYTKGADRIRL-GIKNSRRISS 341
           + + Q   YT   D  +L  I     +  
Sbjct: 283 RNISQTMKYTHFLDDHKLSAIGAIDNLGR 311


>gi|291282339|ref|YP_003499157.1| putative integrase [Escherichia coli O55:H7 str. CB9615]
 gi|312966817|ref|ZP_07781035.1| integrase [Escherichia coli 2362-75]
 gi|290762212|gb|ADD56173.1| putative integrase [Escherichia coli O55:H7 str. CB9615]
 gi|312288281|gb|EFR16183.1| integrase [Escherichia coli 2362-75]
          Length = 246

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 41/239 (17%), Positives = 79/239 (33%), Gaps = 21/239 (8%)

Query: 108 DFDYRKITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165
           D     I+TK + + + +   +    SA    +++  +F+ A+ + +VA NP  +    K
Sbjct: 3   DKPLTDISTKEVAAMLNTYVAEGKAVSARVIRSTLVDVFRGAIAEGHVATNPVTTTRAAK 62

Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225
            +    R    E +  + +        RL+ +  + +G R  D CR     + +    I 
Sbjct: 63  SEVRRSRLTANEYVAIYHAAEHLPIWLRLSMDLAVVTGQRVGDLCRMKWSDINDGHLHIG 122

Query: 226 TQKTGTIITVELP-----------DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274
             KTG  I + L            D   K         ET   +   + ++    S +  
Sbjct: 123 QSKTGAKIAIPLALTIDALDISLVDTLQK--CREASSSETIIASTYHEPLSPATVSRYLT 180

Query: 275 AKATKAGV-----NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
                +G+       + H +R   +                 G K+   A  Y    +R
Sbjct: 181 KARNASGISFDGDPPTFHELR-SLSARLYRNQIGYKFAQRLLGHKSDSMAAHYRDSRER 238


>gi|268609330|ref|ZP_06143057.1| site-specific tyrosine recombinase XerC [Ruminococcus flavefaciens
           FD-1]
          Length = 327

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 45/266 (16%), Positives = 93/266 (34%), Gaps = 21/266 (7%)

Query: 103 IRKSGDFDYRKITTKHIRSGV----ESRKHTPSSAIQFLTSMRVLFKWAVRQEYV-AINP 157
           I    + D RKIT   I + +    + R +   +  + ++S+R  FK+  +  ++   +P
Sbjct: 61  ISDFPEDDLRKITVSDIYNFIFYVSDERHNNDKARYRKISSLRSFFKYLEKAAHIIEKDP 120

Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQ 215
              ++ P  K    +  +  +  +           R        L  G+R S+     + 
Sbjct: 121 TKDLDVPVPKKSLPKFLSLNESMRLLQASDNADSKRDYCIITLFLNCGIRLSELVGINIS 180

Query: 216 HLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM---------TPIGKETFFINNDKQKMN 265
            +      ++   K      + L +  +  L               +   FI+N  ++++
Sbjct: 181 DIDFYENRMRVLGKGNKERMIYLNEACVDALNKYLIIRRDNQKAKAELALFISNQNKRIS 240

Query: 266 ATQFSIWFKAKATKAGVNK---SAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAET 321
             +     +   T AG++    + H +R  +AT+    G A    L    G  +V   E 
Sbjct: 241 KRRVQQIVENTLTAAGLDGKGITTHKLRHTAATLMYQYGDADVLTLKELLGHASVATTEI 300

Query: 322 YTKGADRIRLGIKNSRRISSVVDSDD 347
           YT  ++        S  +S V   D 
Sbjct: 301 YTHLSNENVRSAIESNPLSKVKSDDK 326


>gi|167041339|gb|ABZ06093.1| putative Phage integrase family protein [uncultured marine
           microorganism HF4000_005I08]
          Length = 422

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 56/360 (15%), Positives = 110/360 (30%), Gaps = 46/360 (12%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
             RHG   +   K   R  R+               +       +  ++ + KP T+  L
Sbjct: 63  IGRHGSP-WTVEKARTRAKRIIGN------------IADGKDPAKDRDADKNKP-TVAEL 108

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQI------IRKSGDFDYRKITT--KHIRSGVESR 126
              Y +         +S  S +   +                +  I    + ++ G  SR
Sbjct: 109 CERYLEDYAKEHKKPSSLKSDQKNIENHVLPLLGREFVASVTFADIDRFKRAVKDGKSSR 168

Query: 127 KHTP------------SSAIQFLTSMRVLFKWAVRQEY--VAINPCLSVERPKRKTEGIR 172
           +  P              A + L  +  +F  A R  +  V  NPC  V+R        +
Sbjct: 169 ERKPEHQGGPNVTGGKGVANRCLALLSKMFNLAERWGWCSVGSNPCRHVDRYPENKRE-K 227

Query: 173 PWTKEDMQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKT 226
             + +++           SE      A   L+++G R  +       H+        +  
Sbjct: 228 FLSDKELAALAEVLNKSESENPYAVAAIRMLIFTGARLGEILHLEWAHVDMERAMLLLPD 287

Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKS 285
            KTG             L  +  +      I  +K   +       +     +AG+ +  
Sbjct: 288 PKTGQKAVFLSAPALDVLANLPHMKNNPHVICGEKDGSHLVNLQKPWGRIRKRAGLEDVR 347

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNS-RRISSVV 343
            H +R   A+++A  G +   +    G         Y    AD ++   +   +RI++V+
Sbjct: 348 LHDLRHSFASVAASGGLSLPMIGKLLGHTQAATTARYAHLAADPLKAANEAIGQRIAAVM 407


>gi|323495619|ref|ZP_08100692.1| hypothetical protein VISI1226_05828 [Vibrio sinaloensis DSM 21326]
 gi|323319351|gb|EGA72289.1| hypothetical protein VISI1226_05828 [Vibrio sinaloensis DSM 21326]
          Length = 442

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 54/334 (16%), Positives = 106/334 (31%), Gaps = 48/334 (14%)

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK 113
                E  +       ++  L+SE+ +      +   +     S  +             
Sbjct: 100 QPASMEPSSITSNVGRSVSVLLSEFVECKQLEGVKPKNIDLLSSRINNFFENQ-TVSPDS 158

Query: 114 ITTKHIRSGVES---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK---RK 167
           +T +H  + ++S   R  +  +   +L + R  + W +  EY  +NP  +V   K     
Sbjct: 159 VTPRHASAFLKSLYGRGLSAKTVRDYLAATRQFYSWMITMEYATVNPFENVRVKKDVRLP 218

Query: 168 TEGIRPWTKEDMQQFKSFWS----EGSQPRLAFE-----------FLLYSGLRCSDSCRA 212
           +E  R W++E++ +  S  +     G+                   LL++G R S+ C+ 
Sbjct: 219 SEQRRRWSREELVKLFSHDNFAGVIGTNDSTVNYQKKLEDYWIPYLLLFTGARVSEICQL 278

Query: 213 GVQHLQNNIFSI---------KTQKTGTII-TVELPDGFMKLL-------AMTPIGKETF 255
             + +Q               KT KT   I  + L    + +               + F
Sbjct: 279 RTEDVQEREGVWCISVNEDEGKTVKTKASIRHIPLHKELLNMGFLSYVNHRYGARKDKLF 338

Query: 256 FINNDKQKMN-ATQFSIWFKAKATKAGVNK----SAHGVRKFSATISADAGATAHELMAT 310
            I    + M  + QF   F       G       + HG+R      +   G   +E+   
Sbjct: 339 DIRPYGKTMCWSEQFGKRFTKVLKAIGFTGAQRPTLHGLRHTFVDSAQAIGLPENEVCEI 398

Query: 311 YGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
            G         Y +     RL +   + +   +D
Sbjct: 399 VGHAKQSMT--YGRYG--KRLSLMRLKSLIDEID 428


>gi|227888721|ref|ZP_04006526.1| bacteriophage integrase [Lactobacillus johnsonii ATCC 33200]
 gi|227850748|gb|EEJ60834.1| bacteriophage integrase [Lactobacillus johnsonii ATCC 33200]
          Length = 386

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 46/284 (16%), Positives = 95/284 (33%), Gaps = 42/284 (14%)

Query: 100 DQIIRKSGDFDYRKITTKHIRSGVESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158
           + I+   G+    KI+T   +  +       P    +  +    +  +AV  + +  NP 
Sbjct: 103 NHILPVLGELYVEKISTFRCQKALNKWFSDLPKMYRKVYSLSSKVLDYAVNNDLIVKNPM 162

Query: 159 LSVERPKRKTEGIRP---WTKEDMQQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAG 213
             V +PK + +       ++KE++ ++     +   PR  L F  L Y+G+R  ++    
Sbjct: 163 KRVIKPKMQKDKREFTNFYSKEELNKYLDACKQKKNPRVYLFFRLLAYTGMRKGEALALK 222

Query: 214 VQHLQNNIFSIKTQK-----TGTIITVELP---------------------------DGF 241
              +     +I+  K     T   + +  P                              
Sbjct: 223 WSDIDFENETIRINKTLSLGTHNSLVIGTPKTKASNRTIQVDEQTIYYLQEWRKRQRKEL 282

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADA 300
            K+        +  F N + Q +       W K  A  A +   + HG R   A++  +A
Sbjct: 283 FKVGFNALTDDQLLFSNGNNQLIRPWLVQYWNKTIAKDARLKHITVHGFRHTHASLLFEA 342

Query: 301 GATAHELMATYGWKTVDQAE-TYTK--GADRIRLGIKNSRRISS 341
           G    ++    G   +      YT    +++ +   K +R +  
Sbjct: 343 GTPMQDVKERLGHSDITTTMNVYTHVTKSEKKKTAEKFARFMEG 386


>gi|283852866|ref|ZP_06370128.1| integrase family protein [Desulfovibrio sp. FW1012B]
 gi|283571776|gb|EFC19774.1| integrase family protein [Desulfovibrio sp. FW1012B]
          Length = 319

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 46/276 (16%), Positives = 89/276 (32%), Gaps = 30/276 (10%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDF--------DYRKITTKHIRSGVESRKHTPSSAIQF 136
              +  +  ++     Q                       +   + +  R+   SS  + 
Sbjct: 29  KGYSPATLAAYAEDLAQFEESLAGRGLTLAAPGAVTLEAARGFLAELHRRRVAKSSMGRK 88

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-------- 188
           L+++R LF +  R++ V  +P   ++ PK      +    ++     +   E        
Sbjct: 89  LSALRGLFTFLRRKKRVTGDPLAGLKNPKTDKRQPKALNVDEAVALVTPGPESPAADGSR 148

Query: 189 -GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG------ 240
              +     E L  SGLR S++    V  L  +   ++   K G      L D       
Sbjct: 149 EACRDLALAELLYGSGLRVSEAMTLDVDDLDLSQGIVRVMGKGGKERLAPLSDAARVRLG 208

Query: 241 ---FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSAT 295
                +        +  FF+     +++  Q +    A A  AG+  +   H +R   AT
Sbjct: 209 EYARRRAEFAPAPREPAFFLGARGGRLDRRQAARIIDALARGAGLARHAHPHMLRHSFAT 268

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
              ++GA    +    G   +   + YT   D  RL
Sbjct: 269 HLLESGADMRSVQELLGHARLSTTQRYTH-LDLARL 303


>gi|297569003|ref|YP_003690347.1| tyrosine recombinase XerC [Desulfurivibrio alkaliphilus AHT2]
 gi|296924918|gb|ADH85728.1| tyrosine recombinase XerC [Desulfurivibrio alkaliphilus AHT2]
          Length = 330

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 41/291 (14%), Positives = 92/291 (31%), Gaps = 51/291 (17%)

Query: 85  GSLAVNSRISFESYFDQI----IRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLT 138
              + ++  S+    D+               ++  + +R+ V S   ++  SS  + L+
Sbjct: 21  KGYSPHTVSSYRRDLDEFAALDRGAGPLERVDQLDARRVRAFVYSLHGRNRSSSVARKLS 80

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRL 194
           ++R  F++  +   +A +P  +V  PK +       + +++              ++ R 
Sbjct: 81  ALRTFFRYLQKNGVIAHDPAAAVAAPKAEGYLPTVLSVDEVFSLLEMPGPADTYAARDRA 140

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVEL-----------PDGFM 242
             E L  +G+R ++     ++ L      ++ +  G     V +                
Sbjct: 141 MLELLYSTGMRVAELAALNLEQLDLAEGMVRVRGKGNKERLVPIGTPACEAVQAYLPQRE 200

Query: 243 KLLAMTPIGKE---------------------------TFFINNDKQKMNATQFSIWFKA 275
            LL      +E                              +N    ++         K 
Sbjct: 201 VLLRAAKREREEPQEEKPPAPAGGKRSRPARREAAQEQPLLLNARGGRLTTRSIERLVKL 260

Query: 276 KATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            A +AG+    S H +R   AT   + GA    +    G  ++   + YT 
Sbjct: 261 YAERAGIAARVSPHALRHSFATHLLEMGADLRTVQELLGHASLSTTQRYTH 311


>gi|15827839|ref|NP_302102.1| site-specific tyrosine recombinase XerC [Mycobacterium leprae TN]
 gi|221230316|ref|YP_002503732.1| site-specific tyrosine recombinase XerC [Mycobacterium leprae
           Br4923]
 gi|18202762|sp|Q9CBU0|XERC_MYCLE RecName: Full=Tyrosine recombinase xerC
 gi|13093391|emb|CAC30551.1| integrase/recombinase [Mycobacterium leprae]
 gi|219933423|emb|CAR71695.1| integrase/recombinase [Mycobacterium leprae Br4923]
          Length = 297

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 37/273 (13%), Positives = 93/273 (34%), Gaps = 27/273 (9%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHTPSSA---IQFLTSM 140
             + ++R ++      ++           +++   +RS + +     ++     + ++++
Sbjct: 16  GRSEHTRRAYLGDLRSLLTHLEGRGSRLDQLSLPVLRSWLATAAGAGAARTTLARRISAV 75

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS--------QP 192
           +    WA  +  +A +P   ++ P+          ++   Q  +    G+        + 
Sbjct: 76  KAFTAWAKWRGQLAADPAARLQVPRAYRTLPAVLRQDQALQIMAAAKSGAEQGDPLALRD 135

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-----VELPDGFMKLLA- 246
           RL  E L  +G+R S+ C   +  +      ++    G         V   D     L  
Sbjct: 136 RLIVEMLYATGIRVSELCGLDIDDVDTRHRLVRVLGKGNKQRTAPFGVPAADALRGWLDD 195

Query: 247 -----MTPIGKETFFINNDKQKMNATQFSIWFKA--KATKAGVNKSAHGVRKFSATISAD 299
                +T        + +  ++++  Q                +   HG+R  +AT   +
Sbjct: 196 GRPALVTVESGPALLLGSRGRRLDVRQARTVVHQTVAVVAGAPDMGPHGLRHSAATHLLE 255

Query: 300 AGATAHELMATYGWKTVDQAETYTKGA-DRIRL 331
            GA    +    G  ++   + YT  A  R+R+
Sbjct: 256 GGADLRVVQELLGHSSLATTQLYTHVAVSRLRV 288


>gi|298243765|ref|ZP_06967572.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
 gi|297556819|gb|EFH90683.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
          Length = 385

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 60/383 (15%), Positives = 112/383 (29%), Gaps = 68/383 (17%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW----L 74
           G+   Y R   G++                +AL              K+  TL      L
Sbjct: 18  GRFAGYIRLEGGKKKYFYGSTRKEVQDKVRAALN------------EKERGTLATGPNPL 65

Query: 75  ISEYRKSAHWGS-------LAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR 126
           + +Y     W          A ++ + + S     II + G    R +T +HI+     +
Sbjct: 66  LKDYL--PEWLETVCKPPYRAPSTYLHYRSAMKKHIIPEIGHLKIRNLTPRHIQELYAKK 123

Query: 127 ---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
                 P +       +      A++ E V+ N    V  PK     I P T+E  +   
Sbjct: 124 IRDGAKPPTIKLMHEVLSGSLNSALQWEMVSKNVASQVTVPKGVQREIVPLTEEQARVLL 183

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-----------------NNIFSIKT 226
              + G +        + +GLR  +        +                        + 
Sbjct: 184 EI-ARGHRLEGMILLAVTTGLRRGEITALKWSDIDFDARLLFIKHTVSHVAFMGYVEKEP 242

Query: 227 QKTGTIITVELPDG----FMKLLAMTPIGKE-------------TFFINNDKQKMNATQF 269
           +      T+ LP+       +  +      E               F++  +  M++ Q 
Sbjct: 243 KTRAGKRTIHLPEAVIQTLQQHYSEQKAKAEEMGLSLSEWNPKGLVFLSKLRSYMHSPQT 302

Query: 270 SIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKG-- 325
              F     +AG+ K   H +R  +ATI    G     +    G  ++      Y+    
Sbjct: 303 LKEFHQIVAQAGLPKMRFHDLRHSAATILLAKGVHPKVVQELLGHSSIAMTMNIYSHVMP 362

Query: 326 ADRIRLGIKNSRRISSVVDSDDP 348
           + R  +        S   + D+P
Sbjct: 363 SMRKEVASIMDTIFSEEKEGDEP 385


>gi|295105592|emb|CBL03136.1| Site-specific recombinase XerD [Faecalibacterium prausnitzii SL3/3]
          Length = 398

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 38/239 (15%), Positives = 80/239 (33%), Gaps = 19/239 (7%)

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKED----MQQ 181
            +  SS  + L S+   + + V Q   ++ +P  ++  PK+     +  T E     ++ 
Sbjct: 101 GNKKSSTARRLASLHGFYDYLVNQVNRLSEDPTAAIRPPKQDKVLPKYLTAEQSISLLES 160

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240
            ++      +        L  G+R ++     +  +      I+   K      V L D 
Sbjct: 161 TQTQSDFPERDYCMVVLFLNCGMRLAELVGMDLGDIDLEQRQIRLFGKGHKERMVYLNDA 220

Query: 241 FMKLLAM-----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHG 288
            ++ L +           +P  K  F     K++++  +           AG+   S H 
Sbjct: 221 CVEALQLYLRKRNTMEGLSPKEKAVFITRMRKERISNRRVEQLISGAMKAAGLKGFSTHK 280

Query: 289 VRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346
           +R  +AT+    G      L    G  +V   + YT   +           +  V+  +
Sbjct: 281 LRHTAATLMYQTGNVDILTLKQLLGHSSVGTTQIYTHLQEFQVRSAIEENPLGKVLPIN 339


>gi|289643920|ref|ZP_06476023.1| tyrosine recombinase XerD [Frankia symbiont of Datisca glomerata]
 gi|289506249|gb|EFD27245.1| tyrosine recombinase XerD [Frankia symbiont of Datisca glomerata]
          Length = 323

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 58/276 (21%), Positives = 93/276 (33%), Gaps = 35/276 (12%)

Query: 90  NSRISFESYFDQII----RKSGDFDYRKITTKHIRSGVESRKHTPSSAI---QFLTSMRV 142
             R     Y + +     R   D D  ++          + +H P +A    + L S+R 
Sbjct: 29  AYRRDLRRYLEHLSLRGVRSLADVDESEVAEFAATLREGAGEHPPLAASSVARMLVSVRS 88

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS------------EGS 190
           L ++A R+  V  +    V  P       R  T + +       S            EGS
Sbjct: 89  LHRFAAREGEVTSDVSRPVRPPTPPRRLPRALTVDQVVAVLRAASTSAAGGPGGDPAEGS 148

Query: 191 QPRLA---FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLA 246
           +   A    E L  +G R S++    V  L  +  S++   K G    V L     + LA
Sbjct: 149 RQLRAVALLELLYGTGARISEAVGLDVDDLDLDAASVRLLGKGGRARVVPLGRYAGEALA 208

Query: 247 M----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSAT 295
                      +       F++    +++        +  A  AGV   S H +R   AT
Sbjct: 209 AYLVRARPVLASRRASPAVFLSRRGTRLSRQSAWTVLRTAAVAAGVEGVSPHVLRHSFAT 268

Query: 296 ISADAGATAHELMATYGWKTVDQAETYT-KGADRIR 330
              D GA    +    G  +V   + YT    DR+R
Sbjct: 269 HLLDGGADVRVVQELLGHASVSTTQIYTLVTVDRLR 304


>gi|126654062|ref|ZP_01725888.1| site-specific tyrosine recombinase XerC [Bacillus sp. B14905]
 gi|126589442|gb|EAZ83589.1| site-specific tyrosine recombinase XerC [Bacillus sp. B14905]
          Length = 299

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 42/263 (15%), Positives = 87/263 (33%), Gaps = 23/263 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR---KHTPSSAIQFLT 138
            + +V++   +ES     +      G  D   +   H R  V      K   +S  + ++
Sbjct: 20  KNFSVHTVREYESDLLDFLAFLQGEGIHDLASVEYIHARLYVTKLYDEKRARASISRKIS 79

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194
           S+R  F++  RQ         S+  PK+++     + +E++ Q          +  +   
Sbjct: 80  SIRSFFRFLNRQYGFDDGAFRSLYHPKKESRLPNFFYEEELMQLFDANTGDDLKSLRNMA 139

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLL 245
             E L  +G+R S+     V+ +  +   I+    G    +          + D   +  
Sbjct: 140 ILELLYATGIRVSELTSIQVKDVDFHYSIIRVMGKGRKERIIPFGQFASLAMLDYIEQAR 199

Query: 246 AMT--PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAG 301
                    +  F+N    ++              KA ++     H +R   AT   + G
Sbjct: 200 PRLMKKTNHQQLFVNMRGGELTPRGVRHVLNEMIDKASLHTKIYPHMLRHTFATHLLNNG 259

Query: 302 ATAHELMATYGWKTVDQAETYTK 324
           A    +    G   +   + YT 
Sbjct: 260 ADLRTVQELLGHSHLSSTQVYTH 282


>gi|319744173|gb|EFV96543.1| phage integrase family integrase/recombinase [Streptococcus
           agalactiae ATCC 13813]
          Length = 328

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 34/279 (12%), Positives = 90/279 (32%), Gaps = 15/279 (5%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----SRKHT 129
           L+  +  +      +  S   ++   ++++ +  D   R+I+T  +R+ +      R+ +
Sbjct: 53  LLHLFISAKRIEGCSEKSLKYYKMVIEKMVAEL-DKPIRQISTSDLRTYLANYQKERQSS 111

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
             +           F W   ++Y+  +P   + + K         + E ++  +      
Sbjct: 112 KVTIDNMRRIFSSFFSWLEDEDYILKSPVRRIHKIKTDKVIKETLSDESLELLRDTCD-N 170

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG-----FMKL 244
            +     + L  +G+R  +  R   + +  +         G    +   D       +  
Sbjct: 171 IRDLAMIDLLASTGMRVGELVRLNREDINFHERECLVFGKGNSERIVYFDARTKIHLINY 230

Query: 245 LAMTPIGKETFFINN--DKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG 301
           L          F++      ++         +    +A + K   H  R+  AT + D G
Sbjct: 231 LDSRKDDSSALFVSLAYPYDRLMIGGVETRLREIGKRANLQKVHPHKFRRTLATRAIDKG 290

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
               ++    G   +D    Y    ++  +   + + I 
Sbjct: 291 MPIEQVQHLLGHVKIDTTMHYA-MVNQANVKNSHRKYIG 328


>gi|237740506|ref|ZP_04570987.1| integrase/recombinase [Fusobacterium sp. 2_1_31]
 gi|229422523|gb|EEO37570.1| integrase/recombinase [Fusobacterium sp. 2_1_31]
          Length = 328

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 37/275 (13%), Positives = 87/275 (31%), Gaps = 42/275 (15%)

Query: 88  AVNSRISFESYFDQIIRKS--GDFDY---------RKITTKHIRSGV----ESRKHTPSS 132
           +  +   +  +    +     G+ D+         + I  + + + +    E RK   +S
Sbjct: 33  SEKTVKDYMFHLKDFLHFVYEGENDFSISEVIPLMQDIEKEDVEAYIVHLFEDRKLKKTS 92

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW--TKEDMQQFKSFWSEGS 190
               L++++ L+K          NP   ++  K           + +D+++    +   S
Sbjct: 93  VNTILSALKSLYKELESNGL--KNPVKYIKLFKVNRNIENVLKVSIDDIRKIIGLYKIDS 150

Query: 191 QPR----LAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDGFM 242
           + +         L Y+G+R  +      +H         F +   K+G  +   +    +
Sbjct: 151 EKKYRNITILYTLFYTGMRSKELLTLQFKHFLRREDEYFFKLVQTKSGKDVYKPIHKSLV 210

Query: 243 K-------------LLAMTPIGKETFFINN--DKQKMNATQFSIWFKAKATKAGVNKSAH 287
           K              L    + +   F  +  +   ++    ++  +        + S H
Sbjct: 211 KKLEEYRSYLMNMYSLDSKDLDEHYIFATSVSNNSPLSYRSLNVIIQDMGKLIEKDISPH 270

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
            +R   AT  +  GA   E+    G       E Y
Sbjct: 271 NIRHAIATELSLNGADILEIRDFLGHSDTKVTEVY 305


>gi|189460668|ref|ZP_03009453.1| hypothetical protein BACCOP_01310 [Bacteroides coprocola DSM 17136]
 gi|189432627|gb|EDV01612.1| hypothetical protein BACCOP_01310 [Bacteroides coprocola DSM 17136]
          Length = 296

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 46/267 (17%), Positives = 96/267 (35%), Gaps = 24/267 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSG---VES 125
           L   + K   +  + +  + +S+    ++            D+  +    IR     +  
Sbjct: 5   LKDSFLKYLQFEKNYSDKTIVSYGIDLEKFEEYFKTVDECLDFTVVDVDLIRGWVLSLME 64

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
             +T +S  + L+S+R  +++ +RQ  V+++P   V  PK+K        + DM +    
Sbjct: 65  EGYTATSVNRKLSSLRSFYRYLLRQGVVSVDPLQKVVGPKKKKPLPVFVKEADMSRLLDE 124

Query: 186 WSEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPD 239
              G+     + ++  E    +G+R S+        +  ++  IK T K      +   D
Sbjct: 125 ADFGTSFEGVRDKVILEVFYETGVRLSELVGLTDADVDLSLKQIKVTGKRNKQRFIPFGD 184

Query: 240 GFMKLLAM--------TPIGKETFFINNDKQKMNATQFSIWFKA--KATKAGVNKSAHGV 289
                L           P G E FF+  + + +      +  K       +   KS H +
Sbjct: 185 KLKSDLNAYLSVREERFPGGGEAFFLRGNGKPIYPGLVYLLVKRNLSKVVSLKKKSPHVL 244

Query: 290 RKFSATISADAGATAHELMATYGWKTV 316
           R   AT   +  A    +    G +++
Sbjct: 245 RHSFATSMLNNHAELGAVKELLGHESL 271


>gi|148379636|ref|YP_001254177.1| phage integrase [Clostridium botulinum A str. ATCC 3502]
 gi|237795099|ref|YP_002862651.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum Ba4 str. 657]
 gi|148289120|emb|CAL83214.1| phage integrase [Clostridium botulinum A str. ATCC 3502]
 gi|229262802|gb|ACQ53835.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum Ba4 str. 657]
          Length = 349

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 48/277 (17%), Positives = 98/277 (35%), Gaps = 25/277 (9%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSG---VESR 126
            K L   Y + +    + V +    E    ++I+    D +   IT  +IR     + S+
Sbjct: 58  FKELSDLYLEHSK-TRIRVTTFQVKEIIIKERILPYFKDMNVNNITPNNIRKWQNKLMSK 116

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV-ERPKRKTEGIRPWTKEDMQQFKSF 185
            +  +        +  +F +A++   +  NP L      K+ +EG++ WT E+ ++F   
Sbjct: 117 DYKQTYLKAVNKQLNAIFNFAIKYYNLNSNPALKAGPMGKKDSEGMQFWTLEEYKEFIK- 175

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT---------------- 229
             +    +LAFE L ++GLR  +        +      I   KT                
Sbjct: 176 CVDNPMCKLAFEILFWTGLRKGELEALTFSDIDTKNKIISITKTYTRINKKDIINPPKTP 235

Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHG 288
            +   V + D   + +         F  N     +         +    K+ V +   H 
Sbjct: 236 KSKRKVSISDFLCEDIENYKKKLYNFDKNERIFPVGRHILKNSMRDACEKSSVKEIRIHD 295

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
           +R   A++  + G +   +    G + +    +TY+ 
Sbjct: 296 LRHSHASLLIELGFSPLLIKERLGHENIQTTLDTYSH 332


>gi|295134062|ref|YP_003584738.1| transposase [Zunongwangia profunda SM-A87]
 gi|294982077|gb|ADF52542.1| putative transposase [Zunongwangia profunda SM-A87]
          Length = 410

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 49/287 (17%), Positives = 102/287 (35%), Gaps = 28/287 (9%)

Query: 77  EYRKSAHWGSLAVNSRISFE---SYFDQ-IIRKSGDFDYRKI------------TTKHIR 120
           EY       S++ ++   ++    Y  + +  K    D+R I              K  +
Sbjct: 115 EYHNEISRHSISAHTLRHYKVTQGYLQKFLRAKFNLEDFRLIYLNFSFIKDFEFFIKSYQ 174

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                RK   ++A++ L  +R +   A   E++  +P +  +    K       T+E++Q
Sbjct: 175 PTDHQRKMGHNTAMKHLQRLRKMVTMAYHHEWIPKDPFVRFKSSYVKKR-REFLTREELQ 233

Query: 181 QFKSFWSEGSQ---PRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTI 232
             + F S  ++    +  F F  Y+GL   D  +  + ++  +         + QKT T 
Sbjct: 234 SIEDFQSSINRLNIVKDIFLFSCYTGLSYIDITKLTMDNIGMDFDGNQWIETERQKTKTA 293

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290
           + + L +    +L       +T        + +  + + + K  A   G+ K  + H  R
Sbjct: 294 LKIPLLNQARDILKRYQDHPKTVHSKTLLPRYSNQKLNSYLKEIADFCGIKKHLTFHIAR 353

Query: 291 KFSAT-ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
              AT I+   G     +    G   +   + Y +  D+        
Sbjct: 354 HTFATTITLTNGVPIETVSKLLGHTKLATTQIYARVVDKKVKDDMAM 400


>gi|238923573|ref|YP_002937089.1| putative phage integrase/recombinase [Eubacterium rectale ATCC
           33656]
 gi|238925721|ref|YP_002939238.1| putative phage integrase/recombinase [Eubacterium rectale ATCC
           33656]
 gi|238875248|gb|ACR74955.1| putative phage integrase/recombinase [Eubacterium rectale ATCC
           33656]
 gi|238877397|gb|ACR77104.1| putative phage integrase/recombinase [Eubacterium rectale ATCC
           33656]
 gi|291524021|emb|CBK89608.1| Site-specific recombinase XerD [Eubacterium rectale DSM 17629]
          Length = 282

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 42/274 (15%), Positives = 100/274 (36%), Gaps = 18/274 (6%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK---H 128
           K +    R  A   +L   +   + S     +R  G  +   +T +   S + +++    
Sbjct: 3   KDIFESIRNEAEKRNLRERTIQLYCSDVSYFLRWIG-KNVSDLTLEDAESFLTAKRLEGR 61

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           +P +   + ++++ L+K  ++  +       +V   KR+       +++++         
Sbjct: 62  SPETHNHYRSAIKFLYKKVLKTVWDDD----TVPAMKRERNLPAVLSRDEINAIIDATP- 116

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL------PDGFM 242
             + +     +  SGLR S+        +     +I  ++T   I           D   
Sbjct: 117 NLKHKAIIATMYSSGLRVSEVVHLHYDDISRTNMTIHVRETKGRIDRYTILSQKNLDLLT 176

Query: 243 KLLAMTPIGKETFFINND-KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
           +        K+  F ++     ++ T  + +FK  A  AG+ +  S+H  R   A+   +
Sbjct: 177 EYWYKCGRPKDILFPSSWTGGYLDITGVNQFFKKSAKLAGITRHVSSHACRHSFASHLFE 236

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           +G     + +  G       + Y   +++  LGI
Sbjct: 237 SGTDIKYIQSLLGHVDPRSTDVYLHVSNKTLLGI 270


>gi|227891999|ref|ZP_04009804.1| phage integrase [Lactobacillus salivarius ATCC 11741]
 gi|227866203|gb|EEJ73624.1| phage integrase [Lactobacillus salivarius ATCC 11741]
          Length = 370

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 55/351 (15%), Positives = 120/351 (34%), Gaps = 43/351 (12%)

Query: 13  KERTRHGKIIYYFRK------GHGRRI-RLPYPHESTFIPAYM----SALTGSTPKREYI 61
               + G  +Y FR       G  + + R  +  ++    AY     +A  G   +   +
Sbjct: 6   AYTNKKGDKLYKFRIYVGFVDGKSKYVNRAGFKTKTEVKKAYQEVKFAAYQGEYRQESNL 65

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121
           +   +   T   L   + +         +  +  +     +     +   + IT    ++
Sbjct: 66  DVSLR---TFGDLYDFWFEQYKNTVRGSSYYVIKKGLDKNVYPYLKNKQLKNITLIDCQN 122

Query: 122 GVESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT--EGIRPWTKED 178
                 K  P + +      + + ++AV  + +  NP  +V +P+ K        ++KE+
Sbjct: 123 LFNKLLKTNPGNYVILSIYTKKILQYAVTLKLIPENPMNNVIKPREKKTYGSNNYYSKEE 182

Query: 179 MQQFKSFWS-EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----------------NNI 221
           ++ F ++   E     + F  L YSG+R  +     V  +                 ++ 
Sbjct: 183 LKTFLAYSKKEKFHVYVLFRLLAYSGMRIGELLALKVADIDFNTSQISITKTISSDADSR 242

Query: 222 FSIKTQKT--GTIITVELPDGFMKLLAMTPIGK--ETFFINNDK--QKMNATQFSIWFKA 275
           F +   KT  G  I + +    + L++     K  + F        +  +    ++W   
Sbjct: 243 FELHKPKTTTGNRI-ISVDPDTINLVSTLIKDKKKDDFIFRFYGCSKPYSPRTVALWKNK 301

Query: 276 KATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
              KA + K S HG R    ++  ++G    ++    G   V+     YT 
Sbjct: 302 IIKKANLRKISLHGFRHTYTSLLFESGVNIKKIQKQLGHSKVEMTLNVYTH 352


>gi|221640000|ref|YP_002526262.1| site-specific tyrosine recombinase XerC [Rhodobacter sphaeroides
           KD131]
 gi|221160781|gb|ACM01761.1| Phage integrase family protein [Rhodobacter sphaeroides KD131]
          Length = 306

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 45/249 (18%), Positives = 82/249 (32%), Gaps = 19/249 (7%)

Query: 101 QIIRKSGDFDYRKITTKHIRSGVE---SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINP 157
            +    G      +    +R+ +    +R     S  + L+++R    W   +E V    
Sbjct: 48  HLGEGYGLKRLASVPHADLRAWMAHERARGLGARSLARSLSAVRQFTGWLAEREGVDATA 107

Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-------GSQPRLAFEFLLYSGLRCSDSC 210
            LS   PK + +  RP ++ D +   S  +E        ++       L   GLR S++ 
Sbjct: 108 VLSARGPKFRRKLPRPLSEADAKALLSTVAEDAAEDWIRARDLAVVTLLYGCGLRISEAL 167

Query: 211 RA-GVQHLQNNIFSIKTQKTGTIITVELPDGFMKL-----LAMTPIGKETFFINNDKQKM 264
              G  H    +  I  +     +   LP     +     L    +G    F       +
Sbjct: 168 GLPGTAHPLPEVLRITGKGDKERLVPSLPVARAAVARYAALCPFDLGSGVLFRGARGGPL 227

Query: 265 NATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           N    +   +      G+    + H +R   AT   +AG     +    G  ++   + Y
Sbjct: 228 NPRLVARTMERARATLGLPPTATPHALRHSFATHLLNAGGDLRSIQELLGHASLSTTQVY 287

Query: 323 TKGADRIRL 331
           T   D  RL
Sbjct: 288 T-AVDGARL 295


>gi|322836802|ref|YP_004210716.1| integrase [Acidobacterium sp. MP5ACTX9]
 gi|321165889|gb|ADW71589.1| integrase family protein [Acidobacterium sp. MP5ACTX9]
          Length = 317

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 56/295 (18%), Positives = 106/295 (35%), Gaps = 28/295 (9%)

Query: 80  KSAHWGSL-AVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHTPSSAIQ 135
           KS+   SL +  S+ ++ +  +  I          + +      R  +ESR+  P++   
Sbjct: 25  KSSVLQSLGSAASKRTYGAAIEDFITWYCSEPRLAFGRTVVLRYRYELESRRLAPATINL 84

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPK-RKTEGIRP---WTKEDMQQFKSFWSEGS- 190
            L ++R L   A     +  +    + R K  K  G+R     T +  ++  +  +  S 
Sbjct: 85  GLAAVRRLAYEASDNGLLNPDLAAGIRRVKGVKRLGMRLGNWLTADQGKKLLAVPASNST 144

Query: 191 ---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT---QKTGTIITVELPDG---- 240
              +       LL  GLR ++     + H Q +          K G I TV +P      
Sbjct: 145 RDKRDYAVLALLLGCGLRRAELTSLTLGHQQRDGHWAIVNLFGKCGHIRTVPVPSWVKVA 204

Query: 241 FMKLLAMTPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFS 293
             + +    I +   F            +++        + +A  AG+ K + H +R+  
Sbjct: 205 LDRWVIAASISEGAIFRRVSRTGTVWGPRISEKLVWWIVRRRAETAGIEKLAPHDLRRTC 264

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
           A +   AG    ++    G ++ +  E Y     R RL    + +I    DS  P
Sbjct: 265 ARLCHAAGGELEQIQFLLGHRSAETTERYLGS--RQRLASAVNDKIGLEPDSGGP 317


>gi|294644652|ref|ZP_06722402.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294809546|ref|ZP_06768241.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
 gi|292639986|gb|EFF58254.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294443246|gb|EFG12018.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
          Length = 356

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 37/228 (16%), Positives = 80/228 (35%), Gaps = 10/228 (4%)

Query: 110 DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
           D +    +    G +    + ++A  + + ++   K A   EY+ ++    V+      +
Sbjct: 118 DIKMFLLRAPMGGNKKGTISQNTASTYFSILKAGLKQAFIDEYLTVDISAKVKGITNIEK 177

Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSI- 224
                T  ++Q       +    + AF F + +GLR SD      + +    +    ++ 
Sbjct: 178 PRVALTMNEVQMLVDTPCKDDVLKRAFLFSILTGLRHSDIQTLKWKQIQQTSKGTWQAVV 237

Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284
             QKT       +    ++L  + P   E            A+  S   K     +G+ K
Sbjct: 238 IQQKTKRPDYKPVIQQALQLCGIRPDDDEALVFEGLTD---ASWISRPLKVWIEASGIKK 294

Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
             + H  R   A++  + G   + + +  G   V   + YT   +  +
Sbjct: 295 HITFHCGRHSYASLLLENGVDIYTIKSLMGHTNVKTTQIYTHIVNEQK 342


>gi|226324982|ref|ZP_03800500.1| hypothetical protein COPCOM_02774 [Coprococcus comes ATCC 27758]
 gi|225206330|gb|EEG88684.1| hypothetical protein COPCOM_02774 [Coprococcus comes ATCC 27758]
          Length = 358

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 55/335 (16%), Positives = 116/335 (34%), Gaps = 46/335 (13%)

Query: 41  STFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISE---YR----KSAHWGSLAVNSRI 93
             F   Y  A+  +T  +  I+         ++LI E   Y+    K      L     +
Sbjct: 28  PDFARDYFRAIEPTTSPKTRISYAYDIRLFFQFLIEENPVYKHHSIKDFQVQDLEAIQPV 87

Query: 94  SFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYV 153
             E Y + +      +D   + TK  +    S +         ++++R  + +  +++ +
Sbjct: 88  DIEEYLEYLK----VYDTTDVHTKETKQVTNSERGLFRK----MSALRSFYNYFFKRQII 139

Query: 154 AINPCLSVERPKRKTEGIRPWTKEDMQQFKSF--------------WSEGSQPR--LAFE 197
             NP L V+ PK   + I     +++ +   +              +   ++ R      
Sbjct: 140 QKNPTLFVDMPKLHDKAIIRLDTDEVAKLLDYVESCGSKLTGQALSYYNKTKERDIAIIT 199

Query: 198 FLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLA---------M 247
            LL +G+R S+     +  +  NN   + T+K G+ + V   +   K L          +
Sbjct: 200 LLLGTGIRVSELVGLDLSDVDFNNNGVMVTRKGGSQMVVYFGEEVEKALRNYLETYRKAV 259

Query: 248 TPIGK--ETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATA 304
           TP+       F++  K+++         K  A++    + + H +R    T         
Sbjct: 260 TPLAGYENALFLSTQKRRIGVQAVENMVKKYASQITNKRITPHKLRSTYGTALYKETGDI 319

Query: 305 HELMATYGWKTVDQA-ETYTK-GADRIRLGIKNSR 337
           + +    G K V+   + Y     DR R      +
Sbjct: 320 YLVADVLGHKDVNTTKKHYAAIDEDRRRSAANVVK 354


>gi|194447018|ref|YP_002039152.1| shufflon-specific DNA recombinase [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194447281|ref|YP_002043943.1| shufflon-specific DNA recombinase [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194358462|gb|ACF56906.1| shufflon-specific DNA recombinase [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194405585|gb|ACF65806.1| shufflon-specific DNA recombinase [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
          Length = 395

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 44/281 (15%), Positives = 91/281 (32%), Gaps = 25/281 (8%)

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI------IRKSGDFDYRKI 114
           + SPR +  +L   + +Y K+               +   +       + +    D    
Sbjct: 12  MPSPRIRKMSLSRALDKYLKTVSVHKKGHQQEFYRSNVIKRYPIALRNMDEITTVDIATY 71

Query: 115 TTKHIRSGVESRKHTPSSAIQF---LTSMRVLFKWA-VRQEYVAINPCLSVERPKRKTEG 170
               + + +  R   P +       L  +  LF  A V       NP   V +PK  +  
Sbjct: 72  RDVRL-AEINPRTGKPITGNTVRLELALLSSLFNIARVEWGTCRTNPVELVRKPKVSSGR 130

Query: 171 IRPWTKEDMQQFKSFWSE-GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQ 227
            R  T  + ++   ++ E      + F   L + +R  +      +H+     +  +   
Sbjct: 131 DRRLTSSEERRLSRYFREKNLMLYVIFHLALETAMRQGEILALRWEHIDLRHGVAHLPET 190

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM--NATQFSIWFKAKATKAGV-NK 284
           K G    V L       L M P       +N         A+ F   ++    +  + + 
Sbjct: 191 KNGHSRDVPLSRRARNFLQMMP-------VNLHGNVFDYTASGFKNAWRIATQRLRIEDL 243

Query: 285 SAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTK 324
             H +R  + +   + G     E+ A  G ++++  + YT 
Sbjct: 244 HFHDLRHEAISRFFELGSLNVMEIAAISGHRSMNMLKRYTH 284


>gi|283853709|ref|ZP_06370938.1| integrase family protein [Desulfovibrio sp. FW1012B]
 gi|283570887|gb|EFC18918.1| integrase family protein [Desulfovibrio sp. FW1012B]
          Length = 339

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 49/319 (15%), Positives = 100/319 (31%), Gaps = 17/319 (5%)

Query: 17  RHGKIIYYFR-KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75
           + G + +  R +  G                +   +     K +++++   +  TL   +
Sbjct: 6   KRGNLQWEARIRKRGYPATCKTFDTKAEAEQWAKGVETEMSKGQFVSTKEAESYTLSECL 65

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQ 135
             Y++   +     + R           R         I +K I     +R+    SA  
Sbjct: 66  DRYKE--EYLPRLKDPRREISRANCLQSRAIAHRIMSTIRSKDIADYRRAREKEGISANT 123

Query: 136 F---LTSMRVLFKWAV-RQEYVA-INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
               L  +  LF +A       +  NP     +PK      R     + ++      +  
Sbjct: 124 IRLDLALLSRLFNFAKSDWGMESLTNPVQLAAKPKLPPGRERRLESGEEEKLFEAIGDDF 183

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMT 248
           +     +F L + +R  +  +   + +   N    ++  K GT  TV L    +++L   
Sbjct: 184 EFCAIIKFALETAMRRGEIVKLAWEDIDLRNKSVLLRDTKNGTCRTVPLSRKAIEVLQGL 243

Query: 249 PIG-KETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADA-GATAH 305
           P       F       ++    S         AG+ N   H +R  + +   +       
Sbjct: 244 PRHISGRVFP----GHLHPDTLSSKMGKACQLAGLANLHFHDLRHEATSRFFEHTDLDVM 299

Query: 306 ELMATYGWKTVDQAETYTK 324
           E+ A  G K++     YT 
Sbjct: 300 EIKAITGHKSLQMLARYTH 318


>gi|317405722|gb|EFV86018.1| phage integrase family Site-specific recombinase [Achromobacter
           xylosoxidans C54]
          Length = 375

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 53/314 (16%), Positives = 108/314 (34%), Gaps = 32/314 (10%)

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119
           YI     +  T++  ++ Y K     +   +++         IIR  G +    +  + +
Sbjct: 50  YIQRAPAERMTVEAALTRYLKEVT-PTKRASTQAGEHKKAQVIIRHLGKYSLAALNAEIV 108

Query: 120 RSGVESR---------KHTPSSAIQF---LTSMRVLFKWAVRQEY---VAINPCLSVERP 164
               + R         K  P S       L  +  LF  A++ E+   +  NP  ++ RP
Sbjct: 109 AQFRDMRLAGDPDKNGKLRPRSNNTVRLELALLGHLFTVAIK-EWGIGLPFNPVSNIRRP 167

Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNIF 222
              +   R  T E+  +      + S P         + +G+R S+     ++ +     
Sbjct: 168 APGSGRNRRLTPEEQNRLLQAVDKHSNPMFGWIVRIAVQTGMRLSEIATLRIRQVDIERR 227

Query: 223 SIKTQ--KTGTIITVELPDGFMKLLAMT------PIGKETFFINNDKQK--MNATQFSIW 272
            ++ +  K  +  TV L     ++          P   E  F     +        F   
Sbjct: 228 VVRLEHTKNSSPRTVPLTTEATRVFTEALANPLRPAETELVFFGEPGRDGIRRPYLFDKA 287

Query: 273 FKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           +      AG+ +   H +R  + +   +AG +  E+ A  G K++   + YT    R   
Sbjct: 288 WTDAKRAAGLEDFRFHDLRHEAVSRFVEAGLSDQEVSAISGHKSMQMLKRYTHL--RAED 345

Query: 332 GIKNSRRISSVVDS 345
            ++   R++    S
Sbjct: 346 LVQKLDRLARRAPS 359


>gi|218263866|ref|ZP_03477835.1| hypothetical protein PRABACTJOHN_03525 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222465|gb|EEC95115.1| hypothetical protein PRABACTJOHN_03525 [Parabacteroides johnsonii
           DSM 18315]
          Length = 354

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 45/290 (15%), Positives = 95/290 (32%), Gaps = 35/290 (12%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRK--------SGDFDYRKITTK---------- 117
            +Y+  A +       R     +  +             G   + +I             
Sbjct: 70  DKYKLKADFLEY---YRKQLRKHDQKWEFVYLHFSNFVHGKCTFEEIDIDLCNKFREYLL 126

Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
             +    + + T +SA  + ++ R   K   R   +  N    +E+ + +       + E
Sbjct: 127 SAKKLRRNGRITRNSASGYWSTFRGFLKILYRNGMIKTNVNDFLEKIETEDVMKEALSVE 186

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-----QNNIFSIKTQKTGTI 232
           ++ +      +    + A  F   + LR SD      + +           I TQK    
Sbjct: 187 ELYKLAETPCKKPILKTASLFSCMTSLRISDILSLCWEDIVDYSAGGKCVHIITQKNKAE 246

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290
             + + +  + L+      K   F     + +  +   I  K     AG+ K  + H  R
Sbjct: 247 DIIPISEEALGLIGYNSEKKGFVF-----KGLMRSWTQIPMKEWIRSAGITKNITFHSYR 301

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
           +  AT+ A AG     + +    K++   + Y K  D  +   + S++I+
Sbjct: 302 RTFATLQAAAGTDIRTIQSIMAHKSITTTQRYIKVVDANKR--EASKKIT 349


>gi|330504101|ref|YP_004380970.1| phage integrase family protein [Pseudomonas mendocina NK-01]
 gi|328918387|gb|AEB59218.1| phage integrase family protein [Pseudomonas mendocina NK-01]
          Length = 339

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 42/317 (13%), Positives = 94/317 (29%), Gaps = 22/317 (6%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEY 78
           G+         GRR R            + +                K    L  LI  +
Sbjct: 9   GRWKVDVEPIKGRRFR-KTFKTKGEAQRFEATCRAKVINAPEWAPKPKDRRKLSELIDRW 67

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI---TTKHIRSGVESRKHTPSSAIQ 135
             + H  +L+     +     D + ++ G+    K+        R+        P +   
Sbjct: 68  -ATLHAHTLSDG--EARRRLLDTMAKELGNPVAIKMTGNEYAEYRTQAIKAGANPKTLNN 124

Query: 136 FLTSMRVLFKWAVRQEYVA-INPCLSVERPKRKTEGIRPWTKEDMQQFKS---FWSEGSQ 191
            L  +R +F    +   +   NP   V   + + + +   T   ++   +    +     
Sbjct: 125 RLGYLRSVFNVLHQLGEIDYANPLARVRPLRLQEKELAYLTDSQIETLFATIHRYCRTPH 184

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251
             +     L +G R  ++       ++N + +    K   + ++ +     + +      
Sbjct: 185 VAMVAAICLATGARWGEAQALTPDRVRNQLVTFVNTKGKRVRSIPIALELEQQIHRHFKQ 244

Query: 252 KETF--FINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMA 309
              F   +N+  + +  ++           AG  +S+H +R   A+     G     L  
Sbjct: 245 HGQFSNCLNSFDKALGESRLP-------VPAG--QSSHVLRHTFASHFVMNGGNILTLQK 295

Query: 310 TYGWKTVDQAETYTKGA 326
             G  T+     Y   A
Sbjct: 296 ILGHTTLAMTMRYAHLA 312


>gi|299136231|ref|ZP_07029415.1| integrase family protein [Acidobacterium sp. MP5ACTX8]
 gi|298602355|gb|EFI58509.1| integrase family protein [Acidobacterium sp. MP5ACTX8]
          Length = 396

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 53/317 (16%), Positives = 102/317 (32%), Gaps = 34/317 (10%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD 110
           L   +   +    PR K   +   I  +R       L   +      +F+  +++    +
Sbjct: 57  LEDESDPNKPEARPRAK---IVDAIQTFRDDEDSRRLTEGTLKKSRYFFETQLKEWAKNE 113

Query: 111 YRKITTKHIRSGVESRKHTPSSAIQFLTS----MRVLFKWAVRQEYVAINPCLSVERPKR 166
                 +   + +   +   ++A Q +      +     + VR +++  NP + ++R K 
Sbjct: 114 GIVYLDQLTPAVLTKFRSGWTNAAQTMQRKHERLIAFLWFCVRMDWITKNPAILLKRVKA 173

Query: 167 KTEGIRPWTKEDMQQFKS-----------FWSEGSQPRLAFEFLL--YSGLRCSDSCRAG 213
           +      + K++ +                  E  + RL    L+  +SGL   D+    
Sbjct: 174 EPTPTDYFPKDEFKALVDGTYAYGDWRGGHDFEHRRDRLRALILMMRWSGLAIKDAVTLE 233

Query: 214 VQHL-QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI-NNDKQKMNAT---- 267
              L  +    +   KTG  + V LP     LL   P     +F  + +     A     
Sbjct: 234 RTRLSDDGNLFLYRAKTGVPVYVPLPPEVHTLLRSLPNSNPHYFFWSGNGDPETAKRGWV 293

Query: 268 -QFSIWFKAKATK--AGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-T 321
              ++ FK  A K   G      +H  R   A     AG    ++    G  +V   E  
Sbjct: 294 RSLALLFKNVALKSPDGTLKRCHSHMFRDTFAVELLLAGVPIDQVSLLLGHSSVKVTEKH 353

Query: 322 YT--KGADRIRLGIKNS 336
           Y     A + +L     
Sbjct: 354 YAPFVKARQAQLAQSAR 370


>gi|227484989|ref|ZP_03915305.1| possible tyrosine recombinase XerC [Anaerococcus lactolyticus ATCC
           51172]
 gi|227236986|gb|EEI87001.1| possible tyrosine recombinase XerC [Anaerococcus lactolyticus ATCC
           51172]
          Length = 329

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 42/259 (16%), Positives = 91/259 (35%), Gaps = 27/259 (10%)

Query: 92  RISFESYFDQ--IIRKSGDFDYRKITTKHIRSGV----ESRKHTPSSAIQFLTSMRVLFK 145
           +  +E+ FD   I     +  + KIT +   + +      +  + ++  + +++++  +K
Sbjct: 52  KKDYENDFDYKKINFFVDNIFFEKITIQDFYAFLSYLDNDKNDSATTRSRKISAIKSFYK 111

Query: 146 WAV-RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG------SQPRLAFEF 198
           +     E +  N    +  PK         T  + ++     S+       ++       
Sbjct: 112 YMYSEIEVINTNIADKLTNPKISQRQPVYLTLSETERLIETISKEKNTFLKARDLAIVFT 171

Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE----- 253
            L +G+R S+     +  +  + F+I   K     TV L      L+    + +      
Sbjct: 172 FLTTGMRLSELISIDLSDVNKDSFNII-GKGNKERTVYLTKNCQDLINNYIVIRSEYLKD 230

Query: 254 ----TFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG-ATAH 305
                 FI+  K +++        +    KAG +    S H +R  +AT+    G     
Sbjct: 231 DTVNALFISTRKNRISNRAVQSTIEKYLAKAGFDTSVYSTHKLRHTAATLMYKYGNVDIR 290

Query: 306 ELMATYGWKTVDQAETYTK 324
            L    G  +V   + YT 
Sbjct: 291 ALKDILGHASVSTTQIYTH 309


>gi|189402613|ref|ZP_03006783.1| shufflon-specific DNA recombinase [Escherichia coli O157:H7 str.
           EC4401]
 gi|189403473|ref|ZP_02795670.2| shufflon-specific DNA recombinase [Escherichia coli O157:H7 str.
           EC4486]
 gi|189354639|gb|EDU73058.1| shufflon-specific DNA recombinase [Escherichia coli O157:H7 str.
           EC4401]
 gi|189360455|gb|EDU78874.1| shufflon-specific DNA recombinase [Escherichia coli O157:H7 str.
           EC4486]
          Length = 396

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 44/281 (15%), Positives = 91/281 (32%), Gaps = 25/281 (8%)

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI------IRKSGDFDYRKI 114
           + SPR +  +L   + +Y K+               +   +       + +    D    
Sbjct: 13  MPSPRIRKMSLSRALDKYLKTVSVHKKGHQQEFYRSNVIKRYPIALRNMDEITTVDIATY 72

Query: 115 TTKHIRSGVESRKHTPSSAIQF---LTSMRVLFKWA-VRQEYVAINPCLSVERPKRKTEG 170
               + + +  R   P +       L  +  LF  A V       NP   V +PK  +  
Sbjct: 73  RDVRL-AEINPRTGKPITGNTVRLELALLSSLFNIARVEWGTCRTNPVELVRKPKVSSGR 131

Query: 171 IRPWTKEDMQQFKSFWSE-GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQ 227
            R  T  + ++   ++ E      + F   L + +R  +      +H+     +  +   
Sbjct: 132 DRRLTSSEERRLSRYFREKNLMLYVIFHLALETAMRQGEILALRWEHIDLRHGVAHLPET 191

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM--NATQFSIWFKAKATKAGV-NK 284
           K G    V L       L M P       +N         A+ F   ++    +  + + 
Sbjct: 192 KNGHSRDVPLSRRARNFLQMMP-------VNLHGNVFDYTASGFKNAWRIATQRLRIEDL 244

Query: 285 SAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTK 324
             H +R  + +   + G     E+ A  G ++++  + YT 
Sbjct: 245 HFHDLRHEAISRFFELGSLNVMEIAAISGHRSMNMLKRYTH 285


>gi|325680339|ref|ZP_08159898.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
 gi|324107968|gb|EGC02225.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
          Length = 327

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 34/276 (12%), Positives = 89/276 (32%), Gaps = 14/276 (5%)

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119
            ++  + +  +   ++  +  S      +  S   ++     ++   G    + I T  +
Sbjct: 38  AVSCDKTEENSNDKIVGSFISSKRIEGCSEKSLKYYQKTITNMLVAVG-KQVKHIDTDDL 96

Query: 120 RSGV----ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
           R  +    E    +  +       +   F W   + Y+  +P   + + K  +     +T
Sbjct: 97  RKYLTSYQEDNNSSRVTIDNIRRILSSFFSWLEEENYIMKSPVRRIHKIKTASTIKDTYT 156

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
            E ++Q +   ++  +     + L  +G+R  +        +            G    +
Sbjct: 157 DEALEQMRDDCTD-LRDLALIDMLASTGMRVGELVLLNRSDIDFEERECVVLGKGNKERI 215

Query: 236 ELPDG-----FMKLLAMTPIGKETFFIN--NDKQKMNATQFSIWFKAKATKAGVNKS-AH 287
              D        + L       E  F++     +++      +  +    +  + K+  H
Sbjct: 216 VYFDARTKLHLKQYLDSRTDDNEALFVSLKAPHKRLKIGGVEVRIRKIGKRLNIQKAHPH 275

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
             R+  AT++ D G    +L    G + +D    Y 
Sbjct: 276 KFRRTLATMAIDKGMPIEQLQQLLGHRRIDTTLQYA 311


>gi|260889945|ref|ZP_05901208.1| DNA integration/recombination/invertion protein [Leptotrichia
           hofstadii F0254]
 gi|260860551|gb|EEX75051.1| DNA integration/recombination/invertion protein [Leptotrichia
           hofstadii F0254]
          Length = 342

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 45/266 (16%), Positives = 108/266 (40%), Gaps = 11/266 (4%)

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
           K  TLK ++  + ++   G +  +S+ S++ +++ + +   +   + I T  +++ + S 
Sbjct: 66  KDITLKEVMDRFMRNKK-GLVEKSSQKSYKVWYNYL-KPLCNKRMKDIRTLELQNFISSL 123

Query: 127 KHTPSSAIQFLTS-MRVLFKWAVRQEYVAINPCLSVERPKRKTE-GIRPWTKEDMQQFKS 184
            H  +  ++ + S +R+LFK A+  + +  +    ++ P+ K +   + +T+E++     
Sbjct: 124 NHLSTGTLKNIKSFIRMLFKDAMEMDIIVKDYSEFIKLPRHKPKIERKVFTEEEIALLWE 183

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-KT--GTIITVELPDG- 240
             +E     +    L+Y+G+R ++  +    ++      I    KT  G    + +    
Sbjct: 184 NINELEYADVIL-ILIYTGMRINELLKLQKINVDLEQNIITGGSKTEAGKNRIIPIHPKI 242

Query: 241 FMKLLAMTPIGKETFFINNDKQKMN-ATQFSIW-FKAKATKAGVNKSAHGVRKFSATISA 298
              ++       E    N  K        F I  F     + G+  + H  R   AT+ +
Sbjct: 243 LPLVIKRMENKTEYLIPNRRKSNYYEYNNFRIKEFMNIMKQLGMEHTIHDTRHTFATMIS 302

Query: 299 DAGATAHELMATYGWKTVDQAETYTK 324
           D       +    G   ++  + YT 
Sbjct: 303 DVSDNETAITGIIGHTNINMTKRYTH 328


>gi|254452011|ref|ZP_05065448.1| integrase [Octadecabacter antarcticus 238]
 gi|198266417|gb|EDY90687.1| integrase [Octadecabacter antarcticus 238]
          Length = 202

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 56/164 (34%), Gaps = 17/164 (10%)

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN--IFSIKTQKTGTIITVE 236
           +++  +      + R+        G+R  +  R  V  + ++  I  I   K      V 
Sbjct: 13  IKRILAMAPS-LKARVMLSLAYGCGMRAGEVVRLKVGDIDSDQEIIRIVQSKGRKDRIVM 71

Query: 237 LPDGFMKLLAMT------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284
           LP   + LL               P  +   F     + ++A Q S  FK  A +AG+ K
Sbjct: 72  LPVDILSLLRDWWKERPTGQDKDVPAPERVLFPGYRGKHLSARQISRLFKETAREAGITK 131

Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
             + H +R   AT   + G     + A  G   +     Y   A
Sbjct: 132 PVTLHTLRHSFATHLLERGVDIRVIQALLGHSKLTTTARYASVA 175


>gi|325272710|ref|ZP_08139063.1| Orf28 [Pseudomonas sp. TJI-51]
 gi|324102156|gb|EGB99649.1| Orf28 [Pseudomonas sp. TJI-51]
          Length = 315

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 44/268 (16%), Positives = 88/268 (32%), Gaps = 28/268 (10%)

Query: 89  VNSRISFESYFDQIIRKSGDFD---YRKITTKHI---RSGVESRKHTPSSAIQFLTSMRV 142
             +R ++           G      +R++   H+   R+ +E R  + ++  + L ++  
Sbjct: 37  PQTRRAYSIDIGDFTAFVGIVHPDQFREVQRAHVLAWRADLERRVLSAATIRRKLAALTS 96

Query: 143 LFKWAVRQE-YVAINPCLSVERPKRKTEGIRP--WTKEDMQQFKSFWSE----GSQPRLA 195
           LF   +        NP   V+RP  ++   +      +  +            G + R  
Sbjct: 97  LFDHLLDSNAVAGGNPVHGVKRPPNESNEGKTPALGDDQAKALLDAPDLDSVKGLRDRAL 156

Query: 196 FEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTII-TVELPDGFMK-----LLAM 247
              LLY GLR  ++    V  L  +  +  +K    G  +  + L     +     L A 
Sbjct: 157 LAVLLYHGLRREEAAMLDVDDLQERRGVRHLKVHGKGRKVRYLPLHPVAAERIHQYLEAD 216

Query: 248 TPIGKETFFINNDKQ----KMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADA 300
                   F +   +    ++ A          A  AG+       HG+R  +AT + + 
Sbjct: 217 GERTTGPLFRSVRGRTPGARLLANGIYSIIGFWAKTAGIAVAGLGVHGLRATAATNALEH 276

Query: 301 GATAHELMATYGWKTVDQAETYTKGADR 328
            A   ++    G   +     Y +   R
Sbjct: 277 EADIAKVQTWLGHSNISTTRLYDRRGQR 304


>gi|291521528|emb|CBK79821.1| Site-specific recombinase XerD [Coprococcus catus GD/7]
          Length = 583

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 51/341 (14%), Positives = 109/341 (31%), Gaps = 38/341 (11%)

Query: 10  FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
           F+  + TR    I+Y  +    + R+                       + +  P+ +  
Sbjct: 233 FIETDETRWDATIWYLERFRIAKERINQSDSIE------------KISFQEVLQPKNRL- 279

Query: 70  TLKWLISEYRK-SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128
               L+ EY K     G LA+++           +R+  + +  K     I   +++ ++
Sbjct: 280 ----LLQEYMKYEIGIGELALSTVYERFRTIRNFLREISELEVTKCDASLIDVYLKNLQN 335

Query: 129 TPSSAIQF---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED---MQQF 182
               A  F   ++ ++   K+   + Y+   P  +    +++       + E+   M+  
Sbjct: 336 GAMGAKTFNTNVSGIQFFMKFLEVKGYIKKVPFYASYYLEKQIPVHHDRSVEEDVYMEII 395

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELP 238
           ++        R+ F  L   GLR S+ C            +    +   K      V +P
Sbjct: 396 QNLSQFPEHLRMMFLHLWCVGLRISEVCTLKGDAYYIQNGDCWMKVYQVKMKNYKRVPIP 455

Query: 239 DGFMKLLAMT----PIGKETFFINND-KQKMNATQFSIWFKAKATKAGVNK-----SAHG 288
               +L+ +     P  KE +   N      + + F    K   ++ G+        +H 
Sbjct: 456 VTLYRLMQVYLKKHPTEKEAYIFRNRKGGAFSKSTFMGQMKKYCSQIGIQNGEYIFKSHD 515

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            R   AT   + G +   +    G    +    Y     R 
Sbjct: 516 YRHTVATNFYEHGVSIQSIRDYLGHTFEEMTMQYIDYMPRK 556


>gi|227539590|ref|ZP_03969639.1| tyrosine recombinase XerC [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227240503|gb|EEI90518.1| tyrosine recombinase XerC [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 293

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 39/271 (14%), Positives = 86/271 (31%), Gaps = 26/271 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESRKHTPSSAIQFLTS 139
              + ++  ++    +       D    +    H       S +       +S  + +++
Sbjct: 14  KRYSNHTIEAYTHELNVFFTFLQDQGVPEEEADHRVIRLYLSHLMEEGRQATSVNRSISA 73

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKSFWSEGSQPR-- 193
           +R  +K+  R+     NP   ++  K   +      K+ M     Q +      +  R  
Sbjct: 74  LRTYYKFLQRESLTDQNPLTLIKALKTPKKLPSVMEKDKMVGLLDQMEGAVDSFTDERDY 133

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAM---- 247
           L  E L  +G+R ++  +  +  +   N    I   K      V +    ++ L +    
Sbjct: 134 LVLELLFGTGIRLTELLQIKITDIDFYNKNILI-LGKRNKERLVPVNHTLLEKLKIYIQQ 192

Query: 248 ---TPIGKET--FFINNDKQKMNATQFSIWFKAKA--TKAGVNKSAHGVRKFSATISADA 300
                I  +T    +  + ++                      KS H +R   AT   D 
Sbjct: 193 LDNQKIDNKTAFLIVTKEGKQAYPKMIYRIVHRYLSLISTQRKKSPHVLRHTFATALLDN 252

Query: 301 GATAHELMATYGWKTVDQAETYTK-GADRIR 330
           GA  + +    G   +   + YT    +R++
Sbjct: 253 GADLNAIKELLGHAGLAATQVYTHNSVERLK 283


>gi|220904240|ref|YP_002479552.1| integrase family protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219868539|gb|ACL48874.1| integrase family protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 373

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 43/276 (15%), Positives = 95/276 (34%), Gaps = 36/276 (13%)

Query: 85  GSLAVNSRISFESYFDQIIR-----KSGDFDYRKITTKHIRSGVE---SRKHTPSSAIQF 136
              +  +R ++     Q+       +      + +T +H+++ +     +    SS  + 
Sbjct: 78  KGASEATRKAYAVDLAQLAEFLRGQEIDLGQPQTVTRRHMQAFLAWLFRKGEAKSSMARK 137

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG------- 189
           L + R  F++ +R   VA N    V  P+++    R    ++        +         
Sbjct: 138 LAAARSFFRFQMRGGKVAENVAAQVRNPRQEKRHPRALNVDETFALLDSATGPGGKRGPV 197

Query: 190 ----------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-ELP 238
                      +     E L  SGLR S++    V  +Q +   ++    G+   +  L 
Sbjct: 198 AGSAEEERILCRDLALAELLYGSGLRISEALSLDVDDVQLSSRVLRVMGKGSRERLAPLS 257

Query: 239 D--------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHG 288
           D           +   +    +   F+     ++N  + +   +    +AG+    S H 
Sbjct: 258 DTSFSCLKAWLEERPLLALPDEAALFVGARGARLNRREAARIVERLCRRAGLTFTVSPHS 317

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +R   AT   +AGA    +    G + +   + YT+
Sbjct: 318 LRHSFATHLLEAGADMRSVQELLGHQRLTTTQRYTQ 353


>gi|329667143|gb|AEB93091.1| putative prophage integrase [Lactobacillus johnsonii DPC 6026]
          Length = 391

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 58/382 (15%), Positives = 130/382 (34%), Gaps = 58/382 (15%)

Query: 14  ERTRHGKIIYYF-----RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
            + + GK  Y F     +  +G R+++      T+  A    +     + +  N  ++K 
Sbjct: 12  YKLKSGKKRYEFVISLGQNSNGDRVQVHRRGFKTYAEAET--VFNKLSQTKPDNFVKQKQ 69

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRK 127
             +  L   + ++     +  ++    +  FD  +I   G+    KIT   ++   + + 
Sbjct: 70  IKVSKLRDLWFENYK-TQVKESTANKNKQVFDNHVIPDFGNQYVDKITVAELQKWADRKA 128

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-----PWTKEDMQQF 182
                    +     LF++ +R  YV+ NP   +  PK+ +   R      +T++++ QF
Sbjct: 129 KQIVKYRDAINEFNALFEYGIRLNYVSENPLKRIIIPKKTSRPRRDTEHNVYTRDELNQF 188

Query: 183 KSFWSE-GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------------ 229
                E G      F+ L  +GLR S++     Q +     ++   KT            
Sbjct: 189 LEVAKEYGLVQYTYFKLLSATGLRKSEALALTWQDIDLKAGTLSVNKTLAYGLDNKTIIQ 248

Query: 230 -----GTIITVELPDGFMKLL----AMTPIGKETFFINNDKQKMNATQFSIWFK------ 274
                 +   + + D   ++L        I     F       +  ++   W K      
Sbjct: 249 PPKSPKSKRILPISDSLKEVLIDYKQKQKIISNKLFHTIKGTYLKMSKPDQWLKSIYAKD 308

Query: 275 -----AKATKAGVNK--------SAHGVRKFSATIS-ADAGATAHELMATYGWKTVDQA- 319
                  A    + +        + HG R   AT+  A+       +    G + +    
Sbjct: 309 HEEKVKYAKTHNLKEPQPDLRHITVHGFRHTFATLLIAETNVKPKTVQMLLGHENIQMTL 368

Query: 320 ETYTKGADRIRL-GIKNSRRIS 340
           + YT   ++ +   +   ++++
Sbjct: 369 DIYTHVNNKNKEDAVNALKQLN 390


>gi|298387319|ref|ZP_06996872.1| tyrosine type site-specific recombinase [Bacteroides sp. 1_1_14]
 gi|298259988|gb|EFI02859.1| tyrosine type site-specific recombinase [Bacteroides sp. 1_1_14]
          Length = 383

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 49/235 (20%), Positives = 91/235 (38%), Gaps = 14/235 (5%)

Query: 111 YRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV---ERPKRK 167
           +         S   +++   S+ + ++ +  V    A++  Y  INP   +   E+ K+ 
Sbjct: 147 FIDYLKHDYVSYKGNKRLQNSTIVDYVRTFSVAINAAIKDGYKIINPFKLLSSDEKVKQP 206

Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL---QNNIFSI 224
                  ++E++ +             A+ F  +SGLR SD      +++       F++
Sbjct: 207 DSHREYLSQEELLKLMITPCRRDDIGKAYLFACFSGLRISDIRALRWKNIIAEDGQFFAM 266

Query: 225 K-TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
              QKTG  + + LPD  M+++ +    ++  F        N T      K  A  AG+N
Sbjct: 267 LFMQKTGKELKIPLPDKAMEIIPIRGNDEDEVF----SLPSNPTVEDN-LKKWAEAAGIN 321

Query: 284 K--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
           K  + H  R   AT+    G   + +    G   V   + Y K  DR ++   N 
Sbjct: 322 KHLTFHTARHTYATLLLTLGTDLYTVSKMLGHTNVATTQIYAKVVDRKKVDAVNL 376


>gi|78777157|ref|YP_393472.1| Phage integrase [Sulfurimonas denitrificans DSM 1251]
 gi|78497697|gb|ABB44237.1| Phage integrase [Sulfurimonas denitrificans DSM 1251]
          Length = 392

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 48/265 (18%), Positives = 89/265 (33%), Gaps = 33/265 (12%)

Query: 93  ISFESYF----DQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKW 146
             +E       + ++   G      I    I+          TPSSA ++ +    + + 
Sbjct: 102 HVYERKMAAFKNYVVPYFGKTKISAIKPMDIQDWQNRLLTTLTPSSAQKYRSIFYNILQD 161

Query: 147 AVRQEYVAINPCLSVERPKRKTEGIR---------PWTKEDMQQFKSFWSEGSQPRLAFE 197
           A   E +  NP   V+ PK+K++            P+   +++            +  ++
Sbjct: 162 AFINEIIVKNPMQLVKAPKQKSKQKTLFDEEEDVMPFNNAEIKLILEDTQLFEHNKNFYK 221

Query: 198 FLLYSGLRCSDSCRAGVQHL--QNNIFSIKT----QKTGTIITVE-------LPDGFMKL 244
            +L++G+R  ++     Q +        I       K GT  T+        LP     L
Sbjct: 222 LMLFTGMRPGEAVALRWQDILFDKKQIKIMQTRVAGKDGTPKTMSSMRYVDILPQTLEVL 281

Query: 245 L--AMTPIGKETFFINNDKQK-MNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADA 300
           L        KE  F     ++  +    +  FK   T+  +  +  + +R   A+     
Sbjct: 282 LSQQKLTGDKEYLFYTRSGKRYFSHDTLAASFKRLLTRNKIKERVLYNLRHTFASQMISQ 341

Query: 301 GATAHELMATYGWKTVDQA-ETYTK 324
           G     +  T G K V     TYTK
Sbjct: 342 GVDIVWVSKTLGHKDVSITLSTYTK 366


>gi|257076713|ref|ZP_05571074.1| integrase/recombinase [Ferroplasma acidarmanus fer1]
          Length = 280

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 31/148 (20%), Positives = 50/148 (33%), Gaps = 11/148 (7%)

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLA-- 246
           +        LY+G+R S+     +  +    NI  I   K      V +PD   + +   
Sbjct: 119 RDIAVISVFLYTGIRVSELTNLQIGDVDFDENIIYIHAGKGDKDRIVVMPDICREHIKSY 178

Query: 247 -----MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
                         FI+N K K + +      K  A  AG+ K  + H +R   AT    
Sbjct: 179 MKERIRIKSSNNYLFISNKKTKFDTSTVERMVKRVAKNAGITKNVTPHVLRHTFATSILR 238

Query: 300 AGATAHELMATYGWKTVDQAETYTKGAD 327
            G     +    G  ++   + YT   D
Sbjct: 239 NGGDIRFIQQILGHSSLATTQIYTHIDD 266


>gi|254787261|ref|YP_003074690.1| site-specific recombinase, phage integrase family [Teredinibacter
           turnerae T7901]
 gi|237687132|gb|ACR14396.1| site-specific recombinase, phage integrase family [Teredinibacter
           turnerae T7901]
          Length = 317

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 48/298 (16%), Positives = 105/298 (35%), Gaps = 45/298 (15%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGD-FDYRKITTKHIRSGVES---RKHTPSSAIQFLTSM 140
             L+ +S  ++E      +   G      KI  K I   V++      + ++  + L  +
Sbjct: 18  KKLSHHSIRAYERDLQTFLVVVGRRARLEKIDRKIITKFVDACFADGLSHATVKRRLACL 77

Query: 141 RVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQQFKSFW------SEGSQPR 193
           + LFKW   +E +  +P    E + +      R  + +++ +            + S  R
Sbjct: 78  KALFKWLENEEILDDSPFRKFELKVRLPHRLPRNLSVQELNKLLRICRSRLGLPKNSDYR 137

Query: 194 L------------------AFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTII 233
           +                    E L  +G+R  +     +Q +  Q     I+  K     
Sbjct: 138 VGEFASVSRSNLNHLTTLVCVELLFTTGVRVGELTGIRLQDIYLQEKFIHIR-GKGQRER 196

Query: 234 TVELPD--------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284
            V + D         +++L  +T    +   +N+  +   +    IW K  +  A + + 
Sbjct: 197 RVFVTDKSIRNLIESYIQLRKITTPIDQNLLVNSRGRPATSQMVRIWLKNCSKAANLTRV 256

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG--ADRIR-LGIKNSRR 338
            + H  R  +AT   + G     +    G +++   + Y     +D +R + + N R+
Sbjct: 257 ATPHMYRHSTATELLNNGVDIIYVQKLLGHQSISTTQIYAHVSHSDVMRNVALANIRK 314


>gi|237713490|ref|ZP_04543971.1| tyrosine type site-specific recombinase [Bacteroides sp. D1]
 gi|262407276|ref|ZP_06083824.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|229446472|gb|EEO52263.1| tyrosine type site-specific recombinase [Bacteroides sp. D1]
 gi|262354084|gb|EEZ03176.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
          Length = 419

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 37/237 (15%), Positives = 76/237 (32%), Gaps = 10/237 (4%)

Query: 110 DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
           D+R       + G +    + ++A  +    +   K A    Y   +    ++  K K  
Sbjct: 182 DFRLFLLDAPQGGNKKGTISQNTASTYFAIFKAGLKQAFVDGYFVSDIAAKIKGIKEKEA 241

Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK---- 225
                T E++ +      + +  + A  F   +GLR  D  +   + L       +    
Sbjct: 242 RREHLTLEELNRLVCTPCDNATIKRAALFSALTGLRHCDIMKMTWKELTKEGTHYRINFD 301

Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284
            +KT  +  + + +    L        +  F         +   + W       +G+ K 
Sbjct: 302 QKKTKGVEYMPISEQAYDLCGEPGHPDQLVFEGLPAPSWISKPLARWI----EASGITKH 357

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
            + H  R   AT+    G     +    G   V   + YTK  D  +    ++ +I 
Sbjct: 358 ITFHCFRHTYATLQLSNGTDLFTVSKMLGHTNVRTTQRYTKVVDEKKENAADAIKID 414


>gi|317401433|gb|EFV82066.1| integrase/recombinase [Achromobacter xylosoxidans C54]
          Length = 324

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 41/280 (14%), Positives = 83/280 (29%), Gaps = 41/280 (14%)

Query: 85  GSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIR---SGVESRKHTPSSAIQFLTS 139
              + ++   +      +   +        ++   HIR   + + ++   P S  + L +
Sbjct: 25  RRYSPHTLDGYRRELGFLHALAERAKLPLERLGNGHIRQFVARLHAQGRGPRSLARTLAA 84

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-------SEGSQP 192
            R  ++W      +A NP   V  PK      +  + E  Q                 + 
Sbjct: 85  WRGFYQWWAPAIGLAGNPVAGVRAPKAPRSLPKALSVEQTQALLDRAPAKVATEPAALRD 144

Query: 193 RLAFEFLLYSGLRCSDSCRA-------------GVQHLQNNIFSIKTQKTGTIITVELPD 239
           +  FE L  SGLR S+                 G  +L      I   K G   +V +  
Sbjct: 145 QAMFELLYSSGLRLSELVGLDLRYARSADYESRGWLNLDEAEV-IVLGKGGKRRSVPVGQ 203

Query: 240 GFMKLLAMTPIGKE-------------TFFINNDKQKMNATQFSIWFKAKATKAGV--NK 284
             +  L      +                F+    ++++     +     A  AG+  + 
Sbjct: 204 AAVAALQRWIEARPQLAPPAASPSDAAALFLGARGRRISPRVVQLQLAHVAQAAGLPTHV 263

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             H +R   A+    +      +    G   +   + YT+
Sbjct: 264 HPHVLRHSFASHVLQSAQDLRAVQEMLGHANISTTQIYTR 303


>gi|308233786|ref|ZP_07664523.1| tyrosine recombinase XerD [Atopobium vaginae DSM 15829]
 gi|328943765|ref|ZP_08241230.1| tyrosine recombinase XerD [Atopobium vaginae DSM 15829]
 gi|327491734|gb|EGF23508.1| tyrosine recombinase XerD [Atopobium vaginae DSM 15829]
          Length = 319

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 41/297 (13%), Positives = 97/297 (32%), Gaps = 42/297 (14%)

Query: 70  TLKWLISEYRKSA-HWGSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGVES 125
           T   +  EY          +V++  S++         ++     D   IT + + + +  
Sbjct: 3   TFDTIKEEYLNYVLIERGYSVHTLHSYDHDLTLYLSFLQSHDIDDPAYITREIVEAYIAH 62

Query: 126 RKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM--- 179
             H   + S+  + ++S++   K+ V ++    +P  +++ PK+        T++ +   
Sbjct: 63  LFHEGMSSSTVQRAVSSIKGFHKFMVVEQICENHPTTNLKLPKKSFHLPDVLTQDQIIHL 122

Query: 180 -----------------QQFKSFWSEGS--QPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220
                            ++  S   +    + +   E L   GLR S+ C      +  +
Sbjct: 123 LDDPFKPQLLPAPKLTARKALSLKPQACFYRDKAILEMLYGCGLRVSELCGLNQGDVLVS 182

Query: 221 IFSIKT-QKTGTIITVELPDGF-----------MKLLAMTPIGKETFFINNDKQKMNATQ 268
              ++   K      V                   LLA +P   +  F++    +++   
Sbjct: 183 DELVRVFGKGSKERLVPCLGTALESYQNYCTKWRALLACSPKTTDAVFLSVRGTRISRQA 242

Query: 269 FSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
                +   +  G+     H +R   AT   + G     +    G  ++   + YT 
Sbjct: 243 VFSLVERYGSYVGIKGLHPHTLRHSYATHMLEGGMNLRIVQELLGHASISTTQLYTH 299


>gi|188589919|ref|YP_001921531.1| tyrosine recombinase XerD [Clostridium botulinum E3 str. Alaska
           E43]
 gi|251778368|ref|ZP_04821288.1| tyrosine recombinase XerD [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|188500200|gb|ACD53336.1| tyrosine recombinase XerD [Clostridium botulinum E3 str. Alaska
           E43]
 gi|243082683|gb|EES48573.1| tyrosine recombinase XerD [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 292

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 31/226 (13%), Positives = 75/226 (33%), Gaps = 15/226 (6%)

Query: 112 RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
            K+T       +     +  S  + + S+R  + +   Q  +   P +  +  K   +  
Sbjct: 47  DKLTVMAYIQYLLESGKSERSINRIVISLRSFYSYLKSQSLINEVPKIEYKSSKNNRKLP 106

Query: 172 RPWTKEDMQQF----KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-T 226
           +  T +++ +     +    +G +     E +  +G++ S+     V  +   +  ++ T
Sbjct: 107 QILTVDEVDKIIRTVEKDCPKGIRDNALLELMYATGMKVSELISLNVDDINLELHFVRCT 166

Query: 227 QKTGTIITVELPDGFMKLL--------AMTPIGKETFFINNDKQKMNATQFSIWFKAKAT 278
                   + +     K L         +   G    F+N +  K+         K  + 
Sbjct: 167 DSRNFERLIPIGRSACKALNEYLSIRYKIAECGVPNLFVNLNGNKLTRQGIWRIVKEYSK 226

Query: 279 KAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           +A ++K    +  R   A      GA    +    G + +   +TY
Sbjct: 227 RAHIDKDVNLNTFRHSFAVHLLQNGANVRAVQKLLGNQVLTYMDTY 272


>gi|154487520|ref|ZP_02028927.1| hypothetical protein BIFADO_01375 [Bifidobacterium adolescentis
           L2-32]
 gi|154084038|gb|EDN83083.1| hypothetical protein BIFADO_01375 [Bifidobacterium adolescentis
           L2-32]
          Length = 389

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 51/344 (14%), Positives = 111/344 (32%), Gaps = 37/344 (10%)

Query: 9   PFVTKERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
            +  ++ T      Y   +RK  G               A+ +A   +         P+ 
Sbjct: 2   AYTIRQYTTKSGKRYEVRYRKPDGSSTGRRGFKRKMDADAWGAANVTAAKSVGAYIDPQA 61

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFE-SYFDQIIRKSGDFDYRKITTKHIRSGVES 125
               ++     +  +    +   +   S E ++   +  + G  + + IT   ++  V  
Sbjct: 62  GRRLVEDFWEPWLAAKKTKA-KPSYIKSLEDAWRVHVEPQWGMREMQSITRDEVQRWVTD 120

Query: 126 RKHTPSSAIQFL--TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
                S+++       +R L + A     +  NPC  +E P+++       + +++ +  
Sbjct: 121 LAGRRSASVTIRAENLLRSLMERAKADRCIHDNPCDGIELPRKQVRKHVYLSADELSRVA 180

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI---------------KTQK 228
                G +  +     L  G+R  +     V+ +      +                  K
Sbjct: 181 MQC--GWREPIVLTLGL-CGMRWGELVALRVEDVDLQRCRLHIYRSITRLSSRLVETDPK 237

Query: 229 TGTIITVELPDGFMKLLAMTPIGKET--FFINNDKQK--------MNATQFSIWFKAKAT 278
           T    +V  P     LLA    G+ +  F      +          N T+   WF     
Sbjct: 238 THDGRSVMFPLVLRPLLARQCEGRRSSDFLFTAPGEPLDEPMGNGWNPTRSDGWFAVALR 297

Query: 279 KAGVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
           +AGV++   + H +R  +A++   +GA    +    G K+    
Sbjct: 298 RAGVDRGHMTIHDLRHTAASLMVQSGANVKTVQRQLGHKSAAMT 341


>gi|296116508|ref|ZP_06835119.1| Integrase [Gluconacetobacter hansenii ATCC 23769]
 gi|295976974|gb|EFG83741.1| Integrase [Gluconacetobacter hansenii ATCC 23769]
          Length = 266

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 45/207 (21%), Positives = 79/207 (38%), Gaps = 8/207 (3%)

Query: 67  KPTTLKWLISEYRKSAHWGS-LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
            P ++  LI +Y       S L  ++R  +  Y D++    GD   R IT + I +  + 
Sbjct: 57  VPGSISALIVDYLADEEAQSRLRASTRRLYRGYLDRMRDDWGDIAARAITRQEIMAIKKR 116

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
              TP  A Q L+ +++L   A  Q  V+ N      R +  +   + W+ E    F   
Sbjct: 117 MLGTPRKANQILSLLQILLARAKDQGIVSENVAERFGRLRIPSRV-QIWSYEMEDAFVER 175

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGF 241
                Q  LA+  LLY+  R SD        +         +++  KTGT++ V + +  
Sbjct: 176 ARPTLQ--LAYMLLLYTVQRPSDVLSMDASLISERNGRLFIALRQSKTGTLLDVPIHERL 233

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQ 268
              +       E        +++  T 
Sbjct: 234 ASRIRERMRQIEQETAGRTGRRVTRTG 260


>gi|254426111|ref|ZP_05039828.1| Phage integrase, N-terminal SAM-like domain protein [Synechococcus
           sp. PCC 7335]
 gi|196188534|gb|EDX83499.1| Phage integrase, N-terminal SAM-like domain protein [Synechococcus
           sp. PCC 7335]
          Length = 352

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 46/277 (16%), Positives = 95/277 (34%), Gaps = 28/277 (10%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---------TPSSAIQ 135
             LA N+R  +E    Q         ++++T + I    +  K          +P++  Q
Sbjct: 39  RELAENTRKVYERQLRQFYE-WAQKPWQQVTHRDIDRYKQHLKALPSKQGGSLSPATINQ 97

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF---KSFWSEGSQP 192
            + S++  FKW   ++Y++ N  L++E+ K   +  +   + ++       ++  E    
Sbjct: 98  SINSLKSFFKWLTVKDYISRNSTLTIEQLKDAPKPPKDLDEAEVDALFDGLNYRGESEVR 157

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA------ 246
            LA   LL  GLR  +     ++        +   K G+   V L    +  L       
Sbjct: 158 DLAILQLLSHGLRAGEVSALNIEDYDGKRVHVLGAKWGSDGKVPLKPEAIMALDSYLGWL 217

Query: 247 ----MTPIGKETFFI----NNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATIS 297
               M    +    +    N+  +++         K  A  + + +   H +R   AT  
Sbjct: 218 VRQGMATTPESPLLVSLSRNSRGKRLGYRGIYDLVKELAAASELEDVHPHRLRHTCATSL 277

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIK 334
              G  +         K+      Y+  A  I++   
Sbjct: 278 VAQGMDSILAKRLVRIKSDRVFARYSDRALDIKMEEA 314


>gi|168186351|ref|ZP_02620986.1| putative integrase/recombinase [Clostridium botulinum C str.
           Eklund]
 gi|169295760|gb|EDS77893.1| putative integrase/recombinase [Clostridium botulinum C str.
           Eklund]
          Length = 274

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 76/221 (34%), Gaps = 19/221 (8%)

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV--ERPKRKTEGIRPWTKEDMQ 180
           +  R     +  + L S+   FK+         N  + +  E+ + +       + +D+Q
Sbjct: 59  IYDRGLKIKTINRKLVSINQFFKF--------NNIAVDIRQEKVQMQNFLDDILSNKDVQ 110

Query: 181 QF--KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
                ++  +  + R     L Y+G+R S+  +  +   +    +I   K      V +P
Sbjct: 111 ALVNATYKKDDLRARTIIYTLYYTGMRVSEMLQLTIYDTKKQSITI-LGKGAKHREVFIP 169

Query: 239 DGFM---KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKF 292
           +      +      I K T      +  +N        K  A  AGV+KS   AH  R  
Sbjct: 170 NKLKDIWEAYMNVRIRKGTALFTGKRGPINRKTVDSLIKEYAALAGVSKSKAHAHNFRHL 229

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
                AD G     +    G + ++    YT+      L I
Sbjct: 230 YCKNLADKGIDISTIADIAGHQNINTTRIYTRKTKEELLDI 270


>gi|134298655|ref|YP_001112151.1| phage integrase family protein [Desulfotomaculum reducens MI-1]
 gi|134051355|gb|ABO49326.1| phage integrase family protein [Desulfotomaculum reducens MI-1]
          Length = 293

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 39/278 (14%), Positives = 87/278 (31%), Gaps = 22/278 (7%)

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYF----DQIIRKSGDFD----YRKITTKHI 119
             T   ++S++ +  + G  A ++  +++          I  +G          I  +  
Sbjct: 2   KNTSGNILSDFLEDIYSGGTARSTVEAYQKDVVYFSKWYIDTTGKEPHLWDITSIDLREY 61

Query: 120 RSGVES-RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
           +  + S +   P++  + + +M    +WA  + Y++       +  K +    +   + +
Sbjct: 62  QEYMLSVQGLMPATINRRMAAMEKYIRWAHGKGYISRLLAF-PKIIKEQKTPPKALGRVE 120

Query: 179 MQQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT---QKTGTII 233
             +         + R       ++  GLR  +     +  L             K     
Sbjct: 121 QNRLLREAERHGKARDIALIRLMMSCGLRVGEVVSIRLSDLDIGERHGTVAVLGKGKKYR 180

Query: 234 TVELPDGFMKLLAMTPI-------GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA 286
            V +P    K +              +  F N +   + A       K     AG++   
Sbjct: 181 KVPVPPEARKAIKEWLAERTQRYPDNDWLFPNRNVGNITARNVEQVIKNIGKFAGLDLHP 240

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           H +R  +AT     GA    +    G   ++    YTK
Sbjct: 241 HVLRHTAATNMIRTGADIVTVAQILGHANLNTTAIYTK 278


>gi|331091853|ref|ZP_08340685.1| hypothetical protein HMPREF9477_01328 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330402752|gb|EGG82319.1| hypothetical protein HMPREF9477_01328 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 350

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 50/296 (16%), Positives = 97/296 (32%), Gaps = 30/296 (10%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSG---VESRKHTP 130
           I  Y +      L  NS  + +   +  I+   G     +IT   I      ++ + ++ 
Sbjct: 62  IQVYFEDKK-NELKENSIRNKQHMMNKHIVPYFGTRKMNEITPAEIIQWQNIIQEKGYSK 120

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER-PKRKTEGIRPWTKEDMQQFKSFWSEG 189
           +        +  LF  A +   +  NPC  V++  K     +  WTK +  +F +    G
Sbjct: 121 TYERMIQNQLNALFNHAQKIYNLKENPCKKVKKMGKSDANKLEFWTKAEYDRFIAGIEPG 180

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ-------------KTGTII- 233
           S+  L FE L ++G+R  +     +       N+  I                KT   + 
Sbjct: 181 SEDYLIFEILFWTGIREGELLALSLSDFDMSGNLLHINKTYNRIKKRDVIDTPKTENSVR 240

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKF 292
           T+++P+   + +         F  +     + A       K      GV     H +R  
Sbjct: 241 TIDIPNFLKEEVQEYAKKHYGFPEDQRLFPIVARTLQKRLKKYEALTGVKPIRVHDIRHS 300

Query: 293 SATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVVDSDD 347
                   G     +    G K +     TY        L     ++++ ++D+  
Sbjct: 301 HVAYLIYQGVEPLIIKERLGHKDIQMTLNTYGH------LYPSQQKKVAEMLDNKR 350


>gi|229029889|ref|ZP_04185958.1| Prophage LambdaBa04, site-specific recombinase, phage integrase
           [Bacillus cereus AH1271]
 gi|228731397|gb|EEL82310.1| Prophage LambdaBa04, site-specific recombinase, phage integrase
           [Bacillus cereus AH1271]
          Length = 378

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 43/307 (14%), Positives = 102/307 (33%), Gaps = 46/307 (14%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
           I+ Y K      L +    S++               + +  +   + ++ +  +  +  
Sbjct: 82  ITSYEKDMSLVKLYILPPFSYKKI----------KSIKPVMIQSYYAELKEKGLSNGTIS 131

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-GSQPR 193
                +R +FK AV  E +  N    V++P+ +   ++ W+ E+  +F  +  E   +  
Sbjct: 132 NIHRCLRCIFKHAVEWEIIHDNIMNKVKKPREEQGEMKTWSSEECNRFLQYLKEKNIKYH 191

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE 253
           + F   +Y+G+R  +      + +  +   I   K+       L    +K  +       
Sbjct: 192 MFFLLAIYTGMRRGELLALTWKDIDFDNKRILVNKSLVKTEKGLFKAAIKTKSSNRSISI 251

Query: 254 TFFINNDKQKMNATQFSIWFK-------------------------------AKATKAGV 282
           + F+    Q   + +   +F+                                   KAGV
Sbjct: 252 SSFVIGKLQSYYSYKKKEFFRWGIHLNEEAYIFTGNTIHSPLHIDAPHRFLNDHYKKAGV 311

Query: 283 NK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRIS 340
            +   H +R   AT+   AG     +    G  ++    + Y+       +  + +    
Sbjct: 312 PRIRIHDLRHTHATLMLQAGEHPKIVQDRLGHSSIQMTLDKYSHITQ--NMQQQAAENFE 369

Query: 341 SVVDSDD 347
           S++ S++
Sbjct: 370 SIIKSNE 376


>gi|313114164|ref|ZP_07799716.1| site-specific tyrosine recombinase XerC family protein
           [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310623573|gb|EFQ06976.1| site-specific tyrosine recombinase XerC family protein
           [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 401

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 78/228 (34%), Gaps = 20/228 (8%)

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKED----MQQ 181
            +  SS  + L S+   + + V Q   +  +P  ++  PK+     +  T E     ++ 
Sbjct: 101 GNKKSSTARRLASLHGFYDYLVNQVNRLGADPTAAIHPPKQDKVLPKYLTAEQSMELLES 160

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240
            ++      +        L  G+R ++     +  +      I+   K      V L D 
Sbjct: 161 TQTQSDFPERDYCMVTLFLNCGMRLAELVGMNLDDIDLENRQIRLFGKGHKERMVYLNDA 220

Query: 241 FMKLLAM-----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHG 288
            M+ L +            P  K  F     K++++  +           AG+   S H 
Sbjct: 221 CMEALRLYLGKRNTMEGLLPQEKAVFITRRRKERISNRRVEQLVTGAMKAAGLKGFSTHK 280

Query: 289 VRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGAD-RIRLGIK 334
           +R  +AT+    G      L    G   V   + YT   + ++R  I+
Sbjct: 281 LRHTAATLMYQTGNVDILTLKQLLGHSNVSTTQIYTHLQEFQVRAAIE 328


>gi|298243705|ref|ZP_06967512.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
 gi|297556759|gb|EFH90623.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
          Length = 332

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 43/276 (15%), Positives = 89/276 (32%), Gaps = 37/276 (13%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQ------------ 135
           ++  + +       +    G  +  KIT  H+R  +     TPS  I+            
Sbjct: 23  SIAYQQALGYLVSLLSSVCGVNELEKITVLHLRECLRYMIETPSEVIRQRTFGKKSNLAD 82

Query: 136 -----FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-- 188
                ++T+ +V F W  ++E +  +P   ++ P+ +   ++ +T E + +         
Sbjct: 83  STMKTYVTNWKVFFNWCYQEELIDSDPSARLKTPRPEKRVLKTFTSEHIYKMLDTLDLST 142

Query: 189 --GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL- 245
             G +  +    LL +G+R S+     ++ + +    ++  K      V +     KLL 
Sbjct: 143 DMGFRDYVILLLLLDTGIRLSEIGTLLLEDVHDTYIKVR-GKGRKEREVGIHPDLGKLLW 201

Query: 246 --------AMTPIGKETFF-INNDKQKM-----NATQFSIWFKAKATKAGVNKSAHGVRK 291
                      P   + F       +                +       V  S H  R 
Sbjct: 202 KYVHKYRHPGNPDEPKIFIDCTKQGKGKAISGPGVKGILYRLRLALGFKDVRLSPHTFRH 261

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
             A +    G    +L    G  +V   + Y +  D
Sbjct: 262 TFAKMYMAHGGDIFKLSREMGHSSVRITQRYLEDFD 297


>gi|295397658|ref|ZP_06807733.1| tyrosine recombinase XerC [Aerococcus viridans ATCC 11563]
 gi|294974121|gb|EFG49873.1| tyrosine recombinase XerC [Aerococcus viridans ATCC 11563]
          Length = 389

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 54/350 (15%), Positives = 121/350 (34%), Gaps = 57/350 (16%)

Query: 41  STFIPAYMSALTGSTPKREYINSPRKKPT--TLKWLISEYRKSAHWGSLAVNS-RISFES 97
           S F     + +     K+E++ +          + +   + ++    ++  ++ +I  + 
Sbjct: 37  SGFAKKRDAEIAERKAKQEFLKAGTTNTDRLKFEEVAKIWLETYEMSNIKESTFQIQRDI 96

Query: 98  YFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVR-QEYVAIN 156
             + I+   G     KIT    +S V       ++    +     + ++A +  + +  N
Sbjct: 97  VLNHIVPNLGKHYVDKITPIMCQSLVNKFTREFTNYSNMIGLATRILEYARKTLKLIDDN 156

Query: 157 PCLSVERP----KRKTEGIRP--WTKEDMQQFKSFWSE--GSQPRLAFEFLLYSGLRCSD 208
           P   VERP    K K+E      +++E++  F     +    +       + ++G+R  +
Sbjct: 157 PMKDVERPRKARKLKSERYEAPYFSREELVYFLECAKKMNDPKAYAIIHLMSFTGIREGE 216

Query: 209 SCRAGVQH--------------LQNNIFSIKTQKTGT---IITVELPDGFMKLLAMTPI- 250
           +C    +               ++   F  K   T +     T+ + D   ++L      
Sbjct: 217 ACGLMWKDFDEVNNTITIERAIIRGKNFEKKVGTTKSSASERTISIDDETAQVLRNWKSK 276

Query: 251 -------------GKETFFINNDKQK-----MNATQFSIWFKAKATKAGVNKSAHGVRKF 292
                        GK  F   NDK +         +     K       +  +AHG+R  
Sbjct: 277 QKEIMFMLGYNTSGKNQFMFTNDKNEIYQPLYAYDRIQAVCKKFPEIGKM--TAHGLRHT 334

Query: 293 SATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISS 341
             T+  +AG +  E+    G +      E Y+       +  ++S+RI +
Sbjct: 335 HVTLLLEAGMSIKEVQERLGHENTKMVLEVYSH------INKESSKRIGN 378


>gi|257439773|ref|ZP_05615528.1| tyrosine recombinase XerC [Faecalibacterium prausnitzii A2-165]
 gi|257197793|gb|EEU96077.1| tyrosine recombinase XerC [Faecalibacterium prausnitzii A2-165]
          Length = 395

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 43/239 (17%), Positives = 81/239 (33%), Gaps = 23/239 (9%)

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKE------DM 179
            +  SS  + L S+   + + V Q   +  NP  S++ PK+     +  T E      + 
Sbjct: 101 GNKKSSTARRLASLHGFYDYLVNQVNKLTENPTASIKPPKQDKVLPKYLTAEQSMDLLES 160

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELP 238
            Q++S + E  +        L  G+R S+     +  +      I+   K      V L 
Sbjct: 161 TQYQSDFPE--RDYCMVVLFLNCGMRLSELVGMDLGDIDLEQRQIRLFGKGHKERMVYLN 218

Query: 239 DGFMKLLAM-----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SA 286
           +  ++ L +            P  K  F     K++++  +           AG+   S 
Sbjct: 219 EACVEALQLYLAKRNTMEGLNPKEKAVFVTRRRKERISNRRVEQLVTGAMKAAGLKGFST 278

Query: 287 HGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
           H +R  +AT+    G      L    G  +V   + YT   +           + +V  
Sbjct: 279 HKLRHTAATLMYQTGNVDILTLKQLLGHSSVGTTQIYTHLQEFQVRAAIEQNPLGTVTP 337


>gi|204931052|ref|ZP_03221878.1| integrase [Salmonella enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|204320096|gb|EDZ05301.1| integrase [Salmonella enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
          Length = 359

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 48/287 (16%), Positives = 94/287 (32%), Gaps = 34/287 (11%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--- 126
           T+   I  Y       SL+VN+     +    +  K G+    ++TT+HI   +ES    
Sbjct: 75  TVSAWIDRYEVLLQRRSLSVNTYKIRSNQLATVREKMGEIILAEVTTRHIAKFLESWITE 134

Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
            K+T + A++  + +  +F+ A+ + ++  NP  +   P+ K    R      ++ + + 
Sbjct: 135 GKNTMAGAMR--SVLSDMFREAIVEGHIVKNPVETTRIPEIKVARERL----QLETYNAT 188

Query: 186 WSEGSQP----RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241
            +          LA +  L +G R  D        + +    +   KTG  I   L    
Sbjct: 189 RTAAEHLPVWFSLAMDLALVTGQRREDIVNMKFSDIVDGRLHVTQIKTGMKIAFPLSLTL 248

Query: 242 MK--------LLAMTPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNKS-- 285
                     +     + +  F I      N+    ++    +  F      +G   S  
Sbjct: 249 EAPGLRLGTVIDRCRLVSRTDFMISAGIRKNSPTGNIHPDGLTKKFVKARKISGAKFSDN 308

Query: 286 ---AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
               H +R   A                 G  + +  + Y    D  
Sbjct: 309 PPTFHEIR-SLAGRLYKDERGEEFAQKLLGHTSENTTKLYLDERDNK 354


>gi|109392319|ref|YP_655549.1| gp32 [Mycobacterium phage Halo]
 gi|189043119|ref|YP_001936060.1| integrase [Mycobacterium phage BPs]
 gi|239590043|ref|YP_002941890.1| gp32 [Mycobacterium phage Angel]
 gi|91980569|gb|ABE67289.1| integrase [Mycobacterium phage Halo]
 gi|171909234|gb|ACB58191.1| integrase [Mycobacterium phage BPs]
 gi|238890575|gb|ACR77564.1| gp32 [Mycobacterium phage Angel]
 gi|255927876|gb|ACU41496.1| gp32 [Mycobacterium phage Hope]
          Length = 398

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 44/287 (15%), Positives = 86/287 (29%), Gaps = 17/287 (5%)

Query: 52  TGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY 111
              T +     +P   P     ++ +Y  S         +R +  ++  ++ R  G    
Sbjct: 44  ATITGRNTPGPAPVPAPRDWMQILDDYLDSLAAAGYPSTTRATRAAHIRRLARGLGVSPE 103

Query: 112 RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
                  +R   E       +   +  +    F WA R+  +  +P   +   K      
Sbjct: 104 NVTGASLVRFFAEQEHWARETRRGYRNTCVSFFGWACREGRIPTDPSADLPSIKPAPPAP 163

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---NNIFSIKTQK 228
           RP      +   +  +  ++  L        GLR ++  +     L    +    +   K
Sbjct: 164 RPAPDRVYRA--ALMAADARVMLMLRLAAELGLRRAEVAQVSTSDLTESFDGYVLVVHGK 221

Query: 229 TGTIITVELPDGFMKLLAMTPIGK-------ETFFINNDKQKMNATQFSIWFKAKATKAG 281
            G   T+ + D   +L+A    G           F  +D   ++      W       A 
Sbjct: 222 GGKNRTLPVSDELAELIARGAAGHTDGAPATGYLFPGDDAGHLSPR----WVGRLCGDAL 277

Query: 282 VNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
            +  + H +R   AT +         +    G  +V   E YT   D
Sbjct: 278 PDGWTMHKLRHRFATRAYRGSRNLRAVQTMLGHASVATTEIYTAVED 324


>gi|200388241|ref|ZP_03214853.1| integrase [Salmonella enterica subsp. enterica serovar Virchow str.
           SL491]
 gi|9944851|gb|AAG03003.1| integrase [Salmonella enterica subsp. enterica serovar Typhimurium]
 gi|199605339|gb|EDZ03884.1| integrase [Salmonella enterica subsp. enterica serovar Virchow str.
           SL491]
 gi|239842528|gb|ACS32045.1| integrase [Salmonella enterica subsp. enterica]
 gi|260667576|gb|ACX47954.1| integrase [Salmonella enterica subsp. enterica serovar Kentucky]
          Length = 405

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 42/253 (16%), Positives = 83/253 (32%), Gaps = 19/253 (7%)

Query: 93  ISFESYFDQIIRKSGDFDYRKITTKHIRSGV--ESRKHTPSSAIQFLTSMRVLFKWAVRQ 150
            S+    +    +             +   +     K   ++A  +   +R     A R+
Sbjct: 125 RSYHGRAELTFEEIDKKFLEGFRKYLLEEPLTKSQSKLAKNTASSYFNKVRAALNEAFRE 184

Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210
             +  NP   V+  K +       T ++++            + AF F   +GLR SD  
Sbjct: 185 GIIRDNPVQRVKSVKAENTQRTYLTLDEVRAMTKAECRYDVLKRAFLFSCTTGLRWSDIQ 244

Query: 211 RAGVQHLQN-----NIFSIKTQK----TGTIITVELPDGFMKLLAMTPIGKETFFINNDK 261
           +   + ++           K  K      +++ ++LPD  +KL+       E  F     
Sbjct: 245 KLTWKEIEEFQDGHYRIIFKQAKLLNAGNSLVYLDLPDSAVKLMGERQDKAERVF----- 299

Query: 262 QKMNATQFSI-WFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           + +  + ++       A  AGV K  + H  R   A    + G   + L    G   +  
Sbjct: 300 KGLKYSSYTNVALLHWAMLAGVQKHVTFHVGRHTFAVAQLNRGVDIYSLSRLLGHSELRT 359

Query: 319 AETYTKGADRIRL 331
            E Y    +  R+
Sbjct: 360 TEIYADILESRRV 372


>gi|148265120|ref|YP_001231826.1| phage integrase family protein [Geobacter uraniireducens Rf4]
 gi|146398620|gb|ABQ27253.1| phage integrase family protein [Geobacter uraniireducens Rf4]
          Length = 437

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 47/287 (16%), Positives = 101/287 (35%), Gaps = 26/287 (9%)

Query: 62  NSPRKKPTTLKWL-ISEYRKSAHWGSLAVNSRISF--ESYFDQ-IIRKSGDFDYRKITTK 117
             P +   T++ L +  Y     W  +  + R  +  +   +  ++   GD     I  K
Sbjct: 105 PPPPQVELTVRRLAVDLYL--DEWSKIHHSERWHYNNKKALEADVLPAWGDRLAADIRRK 162

Query: 118 HIRSGVES-RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER----PKRKT-EGI 171
                +E   K  P  A   L + R ++ +AV +E +  NP   ++     PK +     
Sbjct: 163 DAVEILELVAKRAPGQARNVLKAARGMYTYAVDRELLEYNPFTDIKISRTIPKMQPMSRD 222

Query: 172 RPWTKEDMQQFKSFWSEG---SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ- 227
           R  ++++++   +   EG      + A + +L +G R  +      Q ++   ++I  Q 
Sbjct: 223 RELSEKEIKHLWNAIDEGGGSDGTKRALKLILITGQRPGEVVGMHRQEIEGKWWTIPWQR 282

Query: 228 -KTGTIITVELPDGFMKLLAMTPIGKETFFIN--NDKQKMNATQFSIWFKAKATKA---- 280
            KT      +       L        + F  +  + +  M     S   +          
Sbjct: 283 IKTRKRRQEDHRIYLSPLAMSLIGDGKGFIFSDPSGENSMTENALSHHVRKDIPDTVKKP 342

Query: 281 --GVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             G+ + + H +R+ +AT  +  GA+   +           +  Y +
Sbjct: 343 YYGLPRWTPHDLRRTAATRLSRIGASDEIIDVILNHAKKGVSGIYNR 389


>gi|210612745|ref|ZP_03289460.1| hypothetical protein CLONEX_01662 [Clostridium nexile DSM 1787]
 gi|210151438|gb|EEA82446.1| hypothetical protein CLONEX_01662 [Clostridium nexile DSM 1787]
          Length = 356

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 46/332 (13%), Positives = 102/332 (30%), Gaps = 44/332 (13%)

Query: 41  STFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVN--SRISFESY 98
            +F   Y  A+  +T  +  I+          +LI     +  +        +    E  
Sbjct: 28  PSFTKDYFRAVEPTTSAKTRISYAYDIRVFFHFLIE---NNPIYHDYTTTQFTLQDLERV 84

Query: 99  FDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158
                      +Y +    +     +   +      +  +S+R  +++  R + +  NP 
Sbjct: 85  -----EPIDIEEYLEYLKVYKADDNQVITNGEKGLARKFSSLRSFYRYFYRHQMIEKNPT 139

Query: 159 LSVERPKRKTEGIRPWTKEDMQQFKS----------------FWSEGSQPRLAFEFLLYS 202
           + V+ PK   + I     +++                     +    ++       LL +
Sbjct: 140 IFVDMPKLHDKAIIRLDIDEVALLLDYVENCGKELTGQKKVYYEKTKTRDLAILTLLLGT 199

Query: 203 GLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLA-----------MTP 249
           G+R S+     +  +   NN   + T+K G+ + +   +     L              P
Sbjct: 200 GIRVSECVGLDINDIDFKNNGIKV-TRKGGSEMVIYFGEEVRNALENYLETTRASATPLP 258

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHEL 307
             +   F++  +++M         K  A +   NK  + H +R    T         + +
Sbjct: 259 DHENALFLSTQRKRMGVQAIENMVKKYAKQVTPNKKITPHKLRSTYGTSLYKETGDIYLV 318

Query: 308 MATYGWKTVDQA-ETYTKGAD-RIRLGIKNSR 337
               G K V+   + Y    D R R      +
Sbjct: 319 ADVLGHKDVNTTKKHYAAIDDMRRRQAASAVK 350


>gi|190573348|ref|YP_001971193.1| putative prophage integrase [Stenotrophomonas maltophilia K279a]
 gi|190011270|emb|CAQ44883.1| putative prophage integrase [Stenotrophomonas maltophilia K279a]
          Length = 413

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 57/306 (18%), Positives = 102/306 (33%), Gaps = 27/306 (8%)

Query: 44  IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-I 102
           +     A            +  +K  T+  L  ++ +         ++   +++  D+ I
Sbjct: 85  MAQDWLAEVRRGGDPGGAKAEARKAPTVAELCKKFMEDYSKKRNKPSTWRGYQAVIDRCI 144

Query: 103 IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA--INPCLS 160
           I   G      +    I   +E   + P+ A +    +R +F  A    +     NPC  
Sbjct: 145 IPMLGRKKVADVKRPDIAGYMEKLSYKPTEANKGFAILRKMFNLAEVWGFRPDGTNPCRH 204

Query: 161 VERPKRKTEGIRPWTKEDM----QQFKSFWSEGSQP-------RLAFEFLLYSGLRCSDS 209
           V       +  R    ++M    +Q +   +EG +        RL FEF      R S+ 
Sbjct: 205 VPM-YPPGKKTRLIVDDEMVLIFRQLEKLEAEGLENYVIPLSIRLQFEFA----GRRSEI 259

Query: 210 CRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI----NNDKQK 263
           C        L N        KTG +    +      LL+  P  +   ++    N+  + 
Sbjct: 260 CTLEWDWIDLDNRRVMWPDSKTGGMSK-PMSAEAHWLLSTAPRREGCPYVLPSPNDPTRH 318

Query: 264 MN-ATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           +     +  W +        +   HG+R  SAT  A++G      M     KTV Q   Y
Sbjct: 319 LTFGEHYGGWCRVLKAAGVPHVGTHGIRHRSATDIANSGVPIKVGMELTQHKTVAQFMHY 378

Query: 323 TKGADR 328
               D+
Sbjct: 379 VHTEDK 384


>gi|167717571|ref|ZP_02400807.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei
           DM98]
          Length = 244

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 71/221 (32%), Gaps = 26/221 (11%)

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           +  S    L++ R  ++W  +   +  NP  +V  PKR     +  + +D        + 
Sbjct: 2   SARSISHRLSAWRAFYRWFSQHVEMNANPVAAVRAPKRAKTLPKALSVDDTAALMDAPTA 61

Query: 189 GS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS------------IKTQKTGTI 232
           G+    +     E    SGLR ++     ++++++  +                 K    
Sbjct: 62  GTAESLRDHAILELFYSSGLRLAELIGLDIEYVKDGAYRSAGWLDLAEAEVTVRGKGDKE 121

Query: 233 ITVEL----PDGFMKLLAM----TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284
             V +     D     LA+            F++    +M+        K  A  AG+  
Sbjct: 122 RKVPVGRKALDALHAWLAVRGEFVKHDPRPLFLSVRGNRMSPGVVRERVKRAALAAGIPA 181

Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
               H +R   AT    +      +    G  ++   + YT
Sbjct: 182 NVHPHVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYT 222


>gi|75909304|ref|YP_323600.1| tyrosine recombinase XerD subunit [Anabaena variabilis ATCC 29413]
 gi|75703029|gb|ABA22705.1| tyrosine recombinase XerD subunit [Anabaena variabilis ATCC 29413]
          Length = 311

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 48/259 (18%), Positives = 90/259 (34%), Gaps = 23/259 (8%)

Query: 86  SLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL 143
            L+  +R  +     Q     K  D       T    +    + +  ++  + L S+   
Sbjct: 39  GLSRTTREQYSRDMRQFRAFVKLDDIRIISPMTFIAYAQHLEQTYAVATTRRKLASLSSF 98

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGI-RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202
             +AVR  ++A NP  +V +PK  T    +  T++ + +      +  + R   + L   
Sbjct: 99  CSFAVRLGFLAANPMAAVRKPKASTTLAGKSLTQQQVFRMLDRTDDH-RNRCLLKVLYSL 157

Query: 203 GLRCSDSCRAGVQHLQNNIFSIKT----QKTGTIITVELPD----GFMKLLAMTPIGK-- 252
           GLR S++             +  T     K G   T+ +P        +L          
Sbjct: 158 GLRVSEAVGLRWSDFTEVNPTKTTVSVLGKGGKYRTLVVPQSVWLELTELRTNQQHNGQN 217

Query: 253 ETFFIN-------NDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGAT 303
           +  F +          ++++    S   KA A   G+ +S  AH +R   A+ S   GA+
Sbjct: 218 DYVFQSYSNRHRKQSGKQLDRCNASKIVKACAVAVGLPESVSAHFLRHACASHSLANGAS 277

Query: 304 AHELMATYGWKTVDQAETY 322
              +  T G   +     Y
Sbjct: 278 IQLVKETLGHANISTTNWY 296


>gi|283458210|ref|YP_003362828.1| integrase [Rothia mucilaginosa DY-18]
 gi|283134243|dbj|BAI65008.1| integrase [Rothia mucilaginosa DY-18]
          Length = 422

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 72/371 (19%), Positives = 124/371 (33%), Gaps = 43/371 (11%)

Query: 1   MTPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPA--YMSALTGSTPKR 58
           MTP+ R P    + R  + +      +       LP  +  T  P     SAL  S    
Sbjct: 56  MTPA-RQPENRAENRNENREEY----RDEAPSTTLPVTYTRTLAPEQVESSALPDSALPE 110

Query: 59  EYINSPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQII---RKSGDFDYRKI 114
             +    +     + ++  + +   +    +  +  S+ S  +       + G      I
Sbjct: 111 SALGVSGEV---FRPVLDRFERFLRYEKHRSEETIRSYISDLEGFFGYMARRGVRHLDSI 167

Query: 115 TTKHIRSGVES---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
               IR  + S   R+   S+ ++  +++R  F WA  +E V  NP   +  PKR++   
Sbjct: 168 DASLIREWLGSLHLRQAARSTVVRRGSTLRTFFTWAQEEELVHANPTRGMRTPKRESHLP 227

Query: 172 RPWTKEDMQQF-----KSFWSEGSQPRL-----AFEFLLYSGLRCSDSCRAGVQHLQNNI 221
              ++E M Q      +    +    RL       E L  SG+R S+     +Q +    
Sbjct: 228 PVLSREQMNQLLTTLQERRAQDPRDARLLRLEAVVEVLYASGMRISELTGLDLQSVDRAN 287

Query: 222 FSIKT-QKTGTIITVEL-PDGFMKLLAMTPIGKE-----------TFFINNDKQKMNATQ 268
            +++   K      V L       L      G+              FI     + NA Q
Sbjct: 288 KTVRVLGKGNKERVVPLGTPALKALNRWVSYGRPQWIPEGSQGVTALFIGPRGGRANARQ 347

Query: 269 FSI-WFKAKATKAGVNKS-AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
                 +   T      S AH +R  +AT   D GA    +    G  ++   + YT   
Sbjct: 348 IREDLTRLLRTVENTQASGAHVLRHSAATHLVDGGADIRSVQELLGHSSLATTQIYTH-V 406

Query: 327 DRIRLGIKNSR 337
              RL    +R
Sbjct: 407 SMKRLAETYAR 417


>gi|116050518|ref|YP_790663.1| putative integrase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115585739|gb|ABJ11754.1| putative integrase [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 401

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 59/297 (19%), Positives = 106/297 (35%), Gaps = 19/297 (6%)

Query: 48  MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKS 106
             A            +  +K  T+K L   +           +++  ++   D  +I   
Sbjct: 77  WLAEVRRGGDPGLDKADARKAPTVKELCGRFMDDHSKPHNKPSTQAGYQYQIDTFVIPAF 136

Query: 107 GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI--NPCLSVERP 164
           G     ++T   I + ++  + +P+ A + L+ +R +F  A    Y     NPC  V + 
Sbjct: 137 GTKKVHEVTRNDITALMKRMEKSPTQANRVLSLVRKMFNLAELWGYRPDGSNPCRHVPKY 196

Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS-------GLRCSDSCRAGVQHL 217
             K    R  T + M +  ++  +     L    LL +         R S+        L
Sbjct: 197 PEKG-STRLITDDQMVKLFAYLDKAEAENLEHPILLLAVRLQFEFAARMSEILLLQWDWL 255

Query: 218 Q--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFF----INNDKQKMNATQFSI 271
              N        KTG +    L +   + L   P   ++ +    I + +Q ++   +  
Sbjct: 256 DLPNGRVVWPDSKTGDMSK-PLSEEAKRRLTSAPRYGDSPYVCPAIIDHRQPLSPHTYYQ 314

Query: 272 WFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
            ++   + AGV K   HG+R  SAT  A++G      MA    KTV     Y    D
Sbjct: 315 GWRRILSNAGVPKVGTHGIRHRSATDIANSGVPVKVGMALTAHKTVAMFMRYVHTED 371


>gi|225026538|ref|ZP_03715730.1| hypothetical protein EUBHAL_00787 [Eubacterium hallii DSM 3353]
 gi|224956152|gb|EEG37361.1| hypothetical protein EUBHAL_00787 [Eubacterium hallii DSM 3353]
          Length = 354

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 61/335 (18%), Positives = 104/335 (31%), Gaps = 36/335 (10%)

Query: 11  VTKERTRHGKIIYYFR---KGHGRRIRLPYPH-ESTFIPAYMSALTGSTPKREYINSPRK 66
           V K++  HG     FR       +R ++            Y +    S      +   + 
Sbjct: 3   VYKDK-AHGTWYTSFRYIDWTGKKRQKMKRGFKTKREALNYENEFKNSVAVEPDMQMDK- 60

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSG--- 122
                   +  Y  S     L  NS  + +   +  II   G+    +IT   I      
Sbjct: 61  -------FVDIYF-SDKKNELKANSIRNKQHMINKHIIPYFGNKKLNEITPADIIQWQKI 112

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER-PKRKTEGIRPWTKEDMQQ 181
           ++  K + +        +  LF  A R   +  NPC  V+R  K   + +  W KE+  +
Sbjct: 113 IQENKFSKTYERMIQNQINALFNHAQRIYNLKENPCKKVKRMGKSDADKLDFWIKEEYDR 172

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---------------NNIFSIKT 226
           F S     S+  L FE L ++G+R  +     +                   +    I T
Sbjct: 173 FISGVDRKSEDYLMFEILFWTGIREGELLSLTIADFDMTNNLLHINKTYHRIDGKDVIST 232

Query: 227 QKTGTII-TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-K 284
            KT   + T+ +P+   + +         F  N     + A       K    K GV   
Sbjct: 233 PKTDNSVRTIIIPNFLKEEVQEYISYHYGFPENERLFPIVARTLQKRMKRYEKKTGVKPI 292

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
             H +R        + G     +    G K +   
Sbjct: 293 RVHDLRHSHVAYLINQGVEPLIIKERLGHKNIQIT 327


>gi|161523675|ref|YP_001578687.1| integrase family protein [Burkholderia multivorans ATCC 17616]
 gi|189351556|ref|YP_001947184.1| tyrosine recombinase [Burkholderia multivorans ATCC 17616]
 gi|160341104|gb|ABX14190.1| integrase family protein [Burkholderia multivorans ATCC 17616]
 gi|189335578|dbj|BAG44648.1| tyrosine recombinase [Burkholderia multivorans ATCC 17616]
          Length = 328

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 41/322 (12%), Positives = 91/322 (28%), Gaps = 29/322 (9%)

Query: 17  RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76
           R+G+      +      +            +  ++  +     +++       T   L+ 
Sbjct: 7   RNGRWQVKINRKGFP-TQYRSFATKAEGQVWARSVETAMDDGTWVDPAGTTDVTFGKLLE 65

Query: 77  EYRKSAHWGSLAVNSRISFE----SYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132
            YR+S         ++ S           +  K  ++  R +T   +    + R    ++
Sbjct: 66  RYRESIT------PTKRSRRSEEYRIGKMLRHKIAEYSMRNLTASLVADYRDQRLKVATN 119

Query: 133 --AIQFLTSMRVLFKWA-VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----- 184
               + L ++  +   A         NP   V++P+      R     ++ +        
Sbjct: 120 SCVCRELATISAVITHAQREWGLSITNPAKLVKKPRLPPGRNRILKPAELDRLLHELHAE 179

Query: 185 FWSEGSQPRLAFE-FLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGF 241
                S+  L      L + +R  +      +H+  +     +   K G    V L    
Sbjct: 180 RHELRSRWLLPLAKLALETAMRQGELLSLEWRHVDFDQRTAYLPMTKNGKDRHVPLSSAA 239

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADA 300
           + +L       E          +        +     +A + N   H +R  + T  A  
Sbjct: 240 IAILESLERIDERVI------PITQNVVLCAWPRACKRAAIENFHFHDLRHMATTNLAKK 293

Query: 301 GATAHELMATYGWKTVDQAETY 322
                EL +  G   V     Y
Sbjct: 294 LPNVIELASVTGHSNVQMLSRY 315


>gi|323480978|gb|ADX80417.1| phage integrase family protein [Enterococcus faecalis 62]
          Length = 392

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 62/392 (15%), Positives = 123/392 (31%), Gaps = 72/392 (18%)

Query: 1   MTPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60
           M    R    +T      GKI +YF+     R       E+    AY+        K++ 
Sbjct: 1   MENMSRFKKHITAT----GKITWYFQAFRTTRRGFNSKREAQL--AYLEMEKQHRNKQKR 54

Query: 61  INS-PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119
           + S  +    + KW   EY +S +     V +    E     + R  G      ++++ +
Sbjct: 55  LASNDKFSVVSQKWF--EYYRSLN--EQKVATYDKREEQVKILNRWIGGKKLSSLSSEEL 110

Query: 120 RSGVESRKHT----------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK-- 167
           +  +   K             +S    +  + ++F +  ++  +  NP   V+ PK +  
Sbjct: 111 QKFLFILKEKEIDGVNVGYAKNSLQSLVQVLNMVFNYCKKKNLINENPMKFVKMPKYQLS 170

Query: 168 ---------TEGIRPWTKEDMQQFKSF--WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216
                    +   +    ++++ F ++    E     + F  L Y+G R S++     Q 
Sbjct: 171 LKDLKESVNSLEDKFLIVDELRAFLNYGIVYEELPMSVLFHVLFYTGCRVSEALALQPQD 230

Query: 217 LQNNI-----------------FSIKTQKT-GTIITVELPD-------GFMKLLAMTPIG 251
           +                     F I+T KT  +   V +           + +L  T   
Sbjct: 231 IDFERNEILFYKQTAVKGKSKDFRIETTKTVSSARRVPVTPLVMEKLQELIDVLNKTKRN 290

Query: 252 -----KETFFI-----NNDKQKMNATQFSIWFKAKATKAGVNKSAHG--VRKFSATISAD 299
                 ET+                   +   K    + G+NK  H    R   A++ A+
Sbjct: 291 SNFVVDETYLFVYLDPGKRGVPYRREYVNDHVKRCVERCGINKDFHTHLARHTMASLVAE 350

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRL 331
              +   L    G      ++ Y       +L
Sbjct: 351 Y-CSWDVLKDRLGHTDSTTSKIYRHLTSTEKL 381


>gi|218134658|ref|ZP_03463462.1| hypothetical protein BACPEC_02561 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990043|gb|EEC56054.1| hypothetical protein BACPEC_02561 [Bacteroides pectinophilus ATCC
           43243]
          Length = 282

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 42/274 (15%), Positives = 100/274 (36%), Gaps = 18/274 (6%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK---H 128
           K +    R  A   +L   +   + S     +R  G  +   +T +   S + +++    
Sbjct: 3   KDIFESIRNEAEKRNLRERTIQLYCSDVSYFLRWIG-KNVSDLTLEDAESFLTAKRLEGR 61

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           +P +   + ++++ L+K  ++  +       +V   KR+       +++++         
Sbjct: 62  SPETHNHYRSAIKFLYKKVLKIVWDDD----TVPAMKRERNLPAVLSRDEINAIIDATP- 116

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL------PDGFM 242
             + +     +  SGLR S+        +     +I  ++T   I           D   
Sbjct: 117 NLKHKAIIATMYSSGLRVSEVVHLHYDDISRTNMTIHVRETKGRIDRYTILSQKNLDLLT 176

Query: 243 KLLAMTPIGKETFFINND-KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
           +        K+  F ++     ++    + +FK  A  AG+N+  S+H  R   A+   +
Sbjct: 177 EYWFKCGRPKDILFPSSWSGGYLDIASVNQFFKKSAKLAGINRHVSSHACRHSFASHLFE 236

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           +G     + +  G       + Y   +++  LGI
Sbjct: 237 SGTDIKYIQSLLGHVDPRSTDVYLHVSNKTLLGI 270


>gi|326381298|ref|ZP_08202992.1| phage integrase family protein [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326199545|gb|EGD56725.1| phage integrase family protein [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 385

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 70/365 (19%), Positives = 126/365 (34%), Gaps = 56/365 (15%)

Query: 11  VTKERTRHGKIIYYFRK-------GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63
           +T+ + ++G++ Y FR        G   R R  YP +      Y   +T       Y+  
Sbjct: 14  ITRRKAKNGRVSYEFRADVGVKPDGSRDRRRFTYPTKKEAQAEYRR-ITTEVAAGRYVGR 72

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI---- 119
            R    T+   +  +        +  N+  ++      I+R  G  + +++T  HI    
Sbjct: 73  SRV---TVAEHVEAWLAGKR--DVRPNTLRNYTDAAKPIVRDLGGLELQRLTKAHIDKFL 127

Query: 120 --RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT---EGIRPW 174
              +  + R ++  SA   L  +R + K A RQ  ++ +P   VE PK K    E +  W
Sbjct: 128 GGLTRRDGRPYSTDSARLVLAVLRQVTKDAHRQGIISRDPSEFVEPPKAKRVAAENLDVW 187

Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234
           T+E+   F+   +E          L   GLR S+      + +  +  +I   +    +T
Sbjct: 188 TREEANLFRKHTAEDRMAACWLLTL--CGLRRSEVLGLRWRDVDLDAGTITVTQGRVEVT 245

Query: 235 V---------------------ELPDGFMKLLAMTPIGK----------ETFFINNDKQK 263
                                 E+ D    L  +    +              +  D   
Sbjct: 246 ATFIDTAEPKTARGRRALPISGEIIDALAALRRLQAAERAEMGCDYAETGLVAVEPDGTP 305

Query: 264 MNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
                +S  F+  A+ AGV   +   VR  S ++  DAG     + A +G         Y
Sbjct: 306 TLPRTYSDRFRRLASAAGVPPITLRNVRHTSVSVMLDAGVPPTVVAAWHGHDPRMTVSVY 365

Query: 323 TKGAD 327
            +  D
Sbjct: 366 GRTYD 370


>gi|90420213|ref|ZP_01228121.1| tyrosine recombinase XerD [Aurantimonas manganoxydans SI85-9A1]
 gi|90335547|gb|EAS49297.1| tyrosine recombinase XerD [Aurantimonas manganoxydans SI85-9A1]
          Length = 328

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 34/273 (12%), Positives = 86/273 (31%), Gaps = 33/273 (12%)

Query: 85  GSLAVNSRISFESYFDQ----IIRKSGDFDYRKITT-KHIRSGVESRKHTPSSAIQFLTS 139
              A N+  ++    +     +  + G          +     + +R    +S  + L++
Sbjct: 34  RGAADNTVAAYRRDLEDAAGFMAGQGGSLMTATTEDIRAYVGRLAARGFAETSRSRRLSA 93

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----------- 188
           +R  +++   +     +P   +E  +RK    +  +++++ +     +            
Sbjct: 94  LRQYYRFLYVEGRRGDDPTGPIEGARRKRPLPKVMSEDEVDRLLDRAAAEAVDPERSPAG 153

Query: 189 ---GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGTIITVELPDGFMKL 244
               ++     E L  +G+R S+        L+      +   K      V + +     
Sbjct: 154 LVRAARMHALVELLYATGMRVSELVSLPRAVLRGRQRMIVVRGKGDKERMVPIGEAARDA 213

Query: 245 LAMTPIGKETFFINNDKQ----------KMNATQFSIWFKAKATKAGVNK---SAHGVRK 291
           L       +   ++ + +           +    F+   KA A + G+     S H +R 
Sbjct: 214 LIRFAEAMKLAGVSEEGRWLFPAVSETGHLTRQAFARDLKALAAREGIPAERISPHVLRH 273

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK 324
             A+     GA    +    G   +   + YT 
Sbjct: 274 AFASHLLQNGADLRAVQELLGHADISTTQIYTH 306


>gi|15643727|ref|NP_228775.1| integrase-recombinase protein [Thermotoga maritima MSB8]
 gi|222100583|ref|YP_002535151.1| Integrase-recombinase protein [Thermotoga neapolitana DSM 4359]
 gi|4981505|gb|AAD36046.1|AE001759_10 integrase-recombinase protein [Thermotoga maritima MSB8]
 gi|221572973|gb|ACM23785.1| Integrase-recombinase protein [Thermotoga neapolitana DSM 4359]
          Length = 253

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 42/254 (16%), Positives = 83/254 (32%), Gaps = 32/254 (12%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES-RKHTPSSAIQFLTSMRVL 143
              +  +   + S   +  R      +  IT +  +  + +  K+ P++    L  ++  
Sbjct: 12  KKRSERTLYQYRSILREFTR------FEPITPETWKEYLNTISKNAPATQRNKLVVVKNY 65

Query: 144 FKWAVRQEYVAI-----NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEF 198
             W   +  +       N       P R T   +    +++++           R  F+ 
Sbjct: 66  LNWRADRGLLNAEERFWNEAE----PPRHTVLPKAIELDEVRRIIEACDNPLY-RAIFKV 120

Query: 199 LLYSGLRCSDSCRAGVQHLQNN---IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF 255
           L  +G+R S+     V  +  N      IK +     I + +    ++ L         F
Sbjct: 121 LANTGMRVSEIVNLSVHDISVNETARIRIKGKGNKERI-INVSKELVEELM-----NSGF 174

Query: 256 FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGW 313
           F     +K +        K  A KAG+ K  + H  R   A    + G   +++ A  G 
Sbjct: 175 FE----KKPSVRSIQRAVKRYARKAGIKKKVTPHIFRHSFAVALIERGVPLNKIQALLGH 230

Query: 314 KTVDQAETYTKGAD 327
             +     Y K A 
Sbjct: 231 ANISTTSIYLKIAS 244


>gi|326791706|ref|YP_004309527.1| integrase family protein [Clostridium lentocellum DSM 5427]
 gi|326542470|gb|ADZ84329.1| integrase family protein [Clostridium lentocellum DSM 5427]
          Length = 384

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 57/370 (15%), Positives = 114/370 (30%), Gaps = 71/370 (19%)

Query: 15  RTRHGKIIY-YFRKGHGRRIRLPYPHESTFIPAYM--SALTGSTPKREYINSPRKKPTTL 71
           R  +G   Y YFR    + ++         + AY    AL G    +  +        TL
Sbjct: 29  RNANGTKKYKYFRAKTKKELKAK-------VDAYKMDVALNGKPLDKTTV--------TL 73

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKS-GDFDYRKITTKHIRSGVESRKHT 129
              + ++        +A  +   + + ++  I     GD   + IT   I+    ++   
Sbjct: 74  SEWVYQFLFVHVIHEVAPTTFHRYVNLYEVHIKDSYIGDIGLQCITHTQIQRYFNNKTDK 133

Query: 130 PSSAIQFLTSM-RVLFKWAVRQEYVAINPCLSVERPKRKTEG--IRPWTKEDMQQFKSFW 186
             + +Q + ++    FK A+   ++  NP   +  PK   E   I+  T ++  ++    
Sbjct: 134 AKATLQKIKNLLNKAFKSAIHNNFIRYNPMDGIIIPKTAKEAKEIKILTTQEQLRYIE-A 192

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ------------------- 227
           S+     L     LY+G+R  +      +++     +I  +                   
Sbjct: 193 SKAEPNGLFLRLALYTGMRLGEVLALKWENVDLEQGTITVKESMKRSRVYSDDGNFIVED 252

Query: 228 -----KTGTIIT-VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281
                KT   I  + +PD  ++ L          F  N       +  +       T A 
Sbjct: 253 VIKEPKTKKGIRLIYIPDILIEELKQIEKEDGLVFDTN------ESTVNHMHDRICTAAK 306

Query: 282 VN---------------KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKG 325
           +N                  H +R   AT   +       +    G K +      Y+  
Sbjct: 307 INPNKVYKGETATTVYGVGIHALRHTLATRLLENNVNIKYVSDILGHKNITTTYNIYSHV 366

Query: 326 ADRIRLGIKN 335
            D  +  +  
Sbjct: 367 LDDSKREVAT 376


>gi|322832185|ref|YP_004212212.1| integrase family protein [Rahnella sp. Y9602]
 gi|321167386|gb|ADW73085.1| integrase family protein [Rahnella sp. Y9602]
          Length = 328

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 63/304 (20%), Positives = 101/304 (33%), Gaps = 20/304 (6%)

Query: 29  HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP--RKKPTTLKWLISEYRKSAHWGS 86
            GRRIR    +       Y   +  +   +E++  P  R+K T L  L   Y    H   
Sbjct: 21  EGRRIR-RKFNTKGEAQIYERHVLVNYHNKEWLEKPADRRKLTDLLELWWLYHGKHHNRG 79

Query: 87  LAVNSRISFESYFDQIIRKSGDFDYRKITTK---HIRSGVESRKHTPSSAIQFLTSMRVL 143
           L         S       + G     +IT K     R  + +    P+S  +       +
Sbjct: 80  LIE---KGRLSAIMIKFAEIGVTRADQITKKAITDYRVKMMNEGLKPASVNRHQAIFSGM 136

Query: 144 FKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202
           F   +   EY + +P   V++ K     +   + E++ Q           R A    L +
Sbjct: 137 FTKLIDANEYHSEHPFRGVKKLKEAEPEMAFLSTEEITQLLDMLE--GDNRNAVLLCLAT 194

Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ 262
           G R S+      +H+ N + +    K G   T+ L +G +K++     GK   F      
Sbjct: 195 GGRWSEVADLKAEHIINCMLTFMKTKNGRRRTIPLSEGLVKMVKKRSTGK--LFT----- 247

Query: 263 KMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
             N        +A        ++ H +R   AT     G     L    G  TV Q   Y
Sbjct: 248 -PNYDTVRNTLRAMKPDLPAGQAVHVLRHTFATHFMMNGGNIITLQRILGHSTVQQTMVY 306

Query: 323 TKGA 326
              A
Sbjct: 307 AHFA 310


>gi|125624456|ref|YP_001032939.1| putative integrase/recombinase [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|124493264|emb|CAL98231.1| putative integrase/recombinase [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|300071244|gb|ADJ60644.1| putative integrase/recombinase [Lactococcus lactis subsp. cremoris
           NZ9000]
          Length = 324

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 43/303 (14%), Positives = 99/303 (32%), Gaps = 45/303 (14%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSGVESR 126
           +++  I E         L+ N+ I  E           ++   +  +I   HI+  +  R
Sbjct: 4   SIQSAIQEMLFDNKARGLSKNTIIFREKILKIFSVFLCQNDILNINEIKPIHIKQYLVDR 63

Query: 127 ---KHTPSSAIQFLTSMRVLFKWAVRQEYV--AINPCLSVERPKRKTEGIRPWTKEDMQQ 181
               ++ ++    L  +R LF + + +EY+     P   V+  K K   +  +T  ++++
Sbjct: 64  LECGYSETTVNGHLRVIRALFSYCINEEYIRYEEAPIHRVKWIKEKKMIVNTFTDSEIKR 123

Query: 182 FKSFWSEGS---------------------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220
              +  + +                     +  L    L  +G+R +++    ++++ ++
Sbjct: 124 MLHYTRKRTFHTIKKTGKGRTGFCTKFVNERNYLLILILTDTGMRINEALSLKLENINDS 183

Query: 221 IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI------------NNDKQKMNA-- 266
              IK  K      V       K        KE +F+                +K +   
Sbjct: 184 QIIIKNGKGKKDRIVHCSPLVYKQYLKYNRAKENYFLSNGIVPIENIFVTKFGKKYDYRL 243

Query: 267 --TQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              +     KA   +  +  S H  R + A          + +    G  ++   E Y +
Sbjct: 244 AEKEIYKIGKAVNIRDTIRISPHTFRHYFAQKLVRENVDIYMIQKLLGHASIKTTEIYLR 303

Query: 325 GAD 327
             +
Sbjct: 304 SLN 306


>gi|321271757|gb|ADW79844.1| IncI1 shufflon-specific DNA recombinase Rci [Escherichia coli]
          Length = 397

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 47/282 (16%), Positives = 94/282 (33%), Gaps = 27/282 (9%)

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
           + SPR +  +L   + +Y K+               +   +        +  +ITT  I 
Sbjct: 14  MPSPRIRKMSLSRALDKYLKTVSVHKKGHQQEFYRSNVIKRY--PIALRNMDEITTVDIA 71

Query: 121 SGVESR----------KHTPSSAIQFLTSMRVLFKWA-VRQEYVAINPCLSVERPKRKTE 169
           +  + R            T ++    L  +  LF  A V       NP   V +PK  + 
Sbjct: 72  TYRDVRLAEINPRTGKAITGNTVRLELALLSSLFNIARVEWGTCRTNPVELVRKPKVSSG 131

Query: 170 GIRPWTKEDMQQFKSFWSE-GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKT 226
             R  T  + ++   ++ E      + F   L + +R  +      +H+     +  +  
Sbjct: 132 RDRRLTSSEERRLSRYFREKNLMLYVIFHLALETAMRQGEILALRWEHIDLRHGVAHLPE 191

Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM--NATQFSIWFKAKATKAGV-N 283
            K G    V L       L M P       +N         A+ F   ++    +  + +
Sbjct: 192 TKNGHSRDVPLSRRARNFLQMMP-------VNLHGNVFDYTASGFKNAWRIATQRLRIED 244

Query: 284 KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTK 324
              H +R  + +   + G     E+ A  G ++++  + YT 
Sbjct: 245 LHFHDLRHEAISRFFELGSLNVMEIAAISGHRSMNMLKRYTH 286


>gi|296446709|ref|ZP_06888649.1| integrase family protein [Methylosinus trichosporium OB3b]
 gi|296255830|gb|EFH02917.1| integrase family protein [Methylosinus trichosporium OB3b]
          Length = 423

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 56/353 (15%), Positives = 107/353 (30%), Gaps = 45/353 (12%)

Query: 26  RKGHGRRIRLPYPHESTFIPAYMSALT-----GSTPKREYINSPRKKPTTLKWLISEYRK 80
           R G  +++++     +T   A   AL       +           +   T + +  ++  
Sbjct: 51  RNGRSQKVKIGVFGPTTAEQARAQALNLLGAIEAGADPVAERRAARAVRTFRQVAEDFMA 110

Query: 81  SAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
                     +  S+    D  ++ + G     +I    +     +   TP  A   ++ 
Sbjct: 111 QHVLTKRKPRTAESYRCLLDKYVLPELGAKRIVEIGRADVARLHSNLGTTPRQANAAVSV 170

Query: 140 MRVLFKWAVRQEYVA--INPCLSVERP----------------------KRKTEGIRPWT 175
           +  ++ WA R+E      NP   +ER                       + +TEGI PW 
Sbjct: 171 ISAIWGWAARREETEFGKNPATRLERFPERRWERYLSSEEMGRLGKALQRAETEGI-PWM 229

Query: 176 KEDMQQFKSFWSEGSQ------PRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ 227
            E+ Q       E  +         A   L+ +G+R  +       H+        +   
Sbjct: 230 DEEPQSKHGVKPENRRSIFDPFAVAAIRLLILTGMRPREVLNLEWGHVDFERGALFLPDS 289

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINND---KQKMNATQFSIWFKAKATKAGVNK 284
           KTG    +        L  +  + K  F I      K + +  +  +  +  A   GV  
Sbjct: 290 KTGRKTVILGGPALRVLSELPRVEKCPFVIAGRSLEKPRADLNRPWVAVRRYAKLEGV-- 347

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNS 336
             + +R   A++ A A      +    G         Y    AD +R      
Sbjct: 348 RLYDLRHSFASVGAGASLGLPIVGKLLGHSQPATTNRYAHLDADPLRHAANAI 400


>gi|256838718|ref|ZP_05544228.1| tyrosine type site-specific recombinase [Parabacteroides sp. D13]
 gi|256739637|gb|EEU52961.1| tyrosine type site-specific recombinase [Parabacteroides sp. D13]
          Length = 406

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 46/275 (16%), Positives = 99/275 (36%), Gaps = 26/275 (9%)

Query: 90  NSRISFE---SYFDQIIRK---SGDFDYRKITTKHIRSGVESRKH----TPSSAIQFLTS 139
            +   +E    Y ++ I+K     D     +    I       K       +SAI  L +
Sbjct: 132 KTVQRYETTTRYLEEFIKKEYQLPDIALNNLEANFISKFDAFLKIEKGCAQNSAITRLKN 191

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLAF 196
           ++ + + A+  +++  +P  +  R K +       T ++++   +         Q R  F
Sbjct: 192 LKKIIRIALENDWIKKDP-FAYYRFKLEETDPEFLTMDEIKIILAKEFTIKRVEQVRDVF 250

Query: 197 EFLLYSGLRCSDSCRAGVQH-LQNN----IFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251
            F +++GL  SD      +H +++N          QKT  +  + +      +L      
Sbjct: 251 VFCIFTGLAFSDVKDLSPEHLVKDNKGELWIRKNRQKTKIMCNIPVLPVAASILDKYKDV 310

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS-ADAGATAHELM 308
            E          ++  + + + K  A   G++K  S H  R   AT      G +   + 
Sbjct: 311 AE--CTGKLLPVLSNQRMNSYLKEIADVCGIHKNLSTHTARHSYATSICLANGVSMENVA 368

Query: 309 ATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343
              G       + Y +  D+     K+ ++++S +
Sbjct: 369 KMLGHADTSVTKHYARVLDQN--IFKDMQKVNSCL 401


>gi|253569672|ref|ZP_04847081.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251840053|gb|EES68135.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 371

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 45/290 (15%), Positives = 95/290 (32%), Gaps = 35/290 (12%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRK--------SGDFDYRKITTK---------- 117
            +Y+  A +       R     +  +             G   + +I             
Sbjct: 87  DKYKLKADFLEY---YRKQLRKHDQKWEFVYLHFSNFVHGKCTFEEIDIDLCNKFREYLL 143

Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
             +    + + T +SA  + ++ R   K   R   +  N    +E+ + +       + E
Sbjct: 144 SAKKLRRNGRITRNSASGYWSTFRGFLKILYRNGMIKTNVNDFLEKIETEDVMKEALSVE 203

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-----QNNIFSIKTQKTGTI 232
           ++ +      +    + A  F   + LR SD      + +           I TQK    
Sbjct: 204 ELYKLAETPCKKPILKTASLFSCMTSLRISDILSLCWKDIVDYSAGGKCVHIITQKNKAE 263

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290
             + + +  + L+      K   F     + +  +   I  K     AG+ K  + H  R
Sbjct: 264 DIIPISEEALGLIGYNSEKKGLVF-----KGLMRSWTQIPMKEWIRSAGITKNITFHSYR 318

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
           +  AT+ A AG     + +    K++   + Y K  D  +   + S++I+
Sbjct: 319 RTFATLQAAAGTDIRTIQSIMAHKSITTTQRYIKVVDANKR--EASKKIT 366


>gi|220935034|ref|YP_002513933.1| integrase family protein [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996344|gb|ACL72946.1| integrase family protein [Thioalkalivibrio sp. HL-EbGR7]
          Length = 401

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 59/297 (19%), Positives = 106/297 (35%), Gaps = 19/297 (6%)

Query: 48  MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKS 106
             A            +  +K  T+K L   +           +++  ++   D  +I   
Sbjct: 77  WLAEVRRGGDPGLDKADARKAPTVKELCGRFMDDHSKPHNKPSTQAGYQYQIDTFVIPAF 136

Query: 107 GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI--NPCLSVERP 164
           G     ++T   I + ++  + +P+ A + L+ +R +F  A    Y     NPC  V + 
Sbjct: 137 GTKKVHEVTRNDITALMKRMEKSPTQANRVLSLVRKMFNLAELWGYRPDGSNPCRHVPKY 196

Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS-------GLRCSDSCRAGVQHL 217
             K    R  T + M +  ++  +     L    LL +         R S+        L
Sbjct: 197 PEKG-STRLITDDQMVKLFAYLDKAEAENLEHPILLLAVRLQFEFAARMSEILLLQWDWL 255

Query: 218 Q--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFF----INNDKQKMNATQFSI 271
              N        KTG +    L +   + L   P   ++ +    I + +Q ++   +  
Sbjct: 256 DLPNGRVVWPDSKTGDMSK-PLSEEAKRRLTSAPRYGDSPYVCPAIIDHRQPLSPHTYYQ 314

Query: 272 WFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
            ++   + AGV K   HG+R  SAT  A++G      MA    KTV     Y    D
Sbjct: 315 GWRRILSNAGVPKVGTHGIRHRSATDIANSGVPVKVGMALTAHKTVAMFMRYVHTED 371


>gi|301058430|ref|ZP_07199451.1| site-specific recombinase, phage integrase family [delta
           proteobacterium NaphS2]
 gi|300447486|gb|EFK11230.1| site-specific recombinase, phage integrase family [delta
           proteobacterium NaphS2]
          Length = 399

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 60/330 (18%), Positives = 101/330 (30%), Gaps = 42/330 (12%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR--------KKPTT 70
           GK  Y F     R  R  +  +         AL     KR  +N+P              
Sbjct: 63  GKWKYKFEFQKKRYKREGFKTQKE-------ALLAEAGKRTLVNAPSLGLMELEEPPSGY 115

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
           L+  I  Y K      +  N+           ++  GD     I    I + +E R  + 
Sbjct: 116 LEETILNYLKYCKKRKMRSNTIRQKYFVLSNFVKSIGDKPVELIRKSDIEAYLELRIDSG 175

Query: 131 SSA-IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI--RPWTKEDMQQFKSFWS 187
            S   + L  +R +F W   +E +  NP   +E+     E     P++     +  +   
Sbjct: 176 KSTFNRDLRDIRAMFNWYYGREGIFHNPANDIEKIGEDVELRYVPPFSDIVAVKLMATRD 235

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-----NIFSIKTQKTGTIITVE--LPDG 240
           EG       E + Y+GLR  ++ R       +      I   + +K GT+      +   
Sbjct: 236 EGD----FLETIFYAGLRRIEAIRLLWSRDVDFESRTLISWTRKRKNGTLTPKPKAITKT 291

Query: 241 FMKLL-----AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSA 294
               L         +    F       + +    +   K    KAGV     H +R   A
Sbjct: 292 LYTALKNRYERRNKLDDRVF-------QFSVEYLNDMMKRLCEKAGVQHFGLHALRHLGA 344

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324
           +I          +    G + +    TY  
Sbjct: 345 SILLSENVPLPAVQEYLGHERITTTNTYAH 374


>gi|254796806|ref|YP_003081643.1| site-specific recombinase, phage integrase family [Neorickettsia
           risticii str. Illinois]
 gi|254590046|gb|ACT69408.1| site-specific recombinase, phage integrase family [Neorickettsia
           risticii str. Illinois]
          Length = 307

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 49/278 (17%), Positives = 100/278 (35%), Gaps = 33/278 (11%)

Query: 75  ISEYRKSAHWGSLAVNSRISFES----YFDQIIRKSGD----FDYRKITTKHIRSGVESR 126
            + +  S      + N+ +++      + D +    G+         I  K +R+ + SR
Sbjct: 16  WTRWLGSV--KCFSSNTLVAYSRDTIAFLDFLSTFRGESVNCASLEGIDDKDLRAWLASR 73

Query: 127 KH---TPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM--- 179
           +    +  +  + L+S++  F++ A     +  +  L V    +     R  T +++   
Sbjct: 74  RKNSISFRTNARALSSVKSFFRYLAKHNGIINED-VLGVVLRFKPNTLPRSLTFKEIIEL 132

Query: 180 -QQF---KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
            ++F   K+ W       L +  L  SGLR S++    V  L N    I   K      +
Sbjct: 133 IEKFSFLKTGWIVKRNIALCY-LLYGSGLRISEALSLTVADLANTEIKIM-GKGSRERMI 190

Query: 236 ELPD----GFMKLLAMTP---IGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286
            L           +A  P    G    F++ +  K+  T  +  F +   +  +  + + 
Sbjct: 191 RLLPIVRVALADYIASCPFQLDGGGFLFLDRNGNKLCRTAVAGAFLSIRRRFNLSNHITP 250

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           H +R   AT     G    ++    G  ++     YTK
Sbjct: 251 HALRHSFATHLLQEGVGVRKIQELLGHASLASTAVYTK 288


>gi|291545712|emb|CBL18820.1| Site-specific recombinase XerD [Ruminococcus sp. SR1/5]
          Length = 322

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 38/248 (15%), Positives = 83/248 (33%), Gaps = 14/248 (5%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES----RKHTPSSAIQFLTSMRVL 143
           +  +   ++   + ++    +   RKITT+ IR+ +       K +  +      ++   
Sbjct: 61  SERTIQYYKVTVEHLLSHI-ETSVRKITTEEIRTYLAEYQKNNKCSNVTVDNIRRNISSF 119

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203
           F W   ++Y+  +P   + + K KT      T E +++ +    E  +     + L  +G
Sbjct: 120 FSWLEEEDYILKSPMKRIHKIKTKTVVKSVITDEGIERLRDNCKE-IRDLAIIDLLYSTG 178

Query: 204 LRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDG----FMKLLAMTPIGKETFFIN 258
           +R  +     V  +       I   K      V           + +A         F+ 
Sbjct: 179 IRVGELVNLNVDDIDLEGRECIVYGKGDKERRVYFDAKAKVHLKEYIAHRKDNNSALFVT 238

Query: 259 NDKQK--MNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKT 315
            D     +  +   I  +    +  + +   H  R+  AT + D G    ++    G   
Sbjct: 239 LDAPHDRLKISGVEIRLRELGKRIDLERIHPHKFRRTMATRAIDKGMPIEQVQKILGHSQ 298

Query: 316 VDQAETYT 323
           +D    Y 
Sbjct: 299 IDTTMQYA 306


>gi|253575298|ref|ZP_04852636.1| integrase [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251845295|gb|EES73305.1| integrase [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 344

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 47/281 (16%), Positives = 93/281 (33%), Gaps = 42/281 (14%)

Query: 86  SLAVNSRISFESYF----DQIIRKSGDFDY-----RKITTKHI------RSGVESRKHTP 130
            L   + + +  ++    D +     D +Y      ++   HI      R+  E  K+ P
Sbjct: 40  GLRERTLVDYAKHYGYFVDWLREAHADVEYVDEVTTQMVRDHISYLKYDRTRYEGHKYIP 99

Query: 131 S----------SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
           +          +    L +++ +F    R + + +NP   V+  ++  +     T ++++
Sbjct: 100 TKDQRVGLSDTTINIRLRTLKAIFNQLERDDLIEVNPLAKVKLLRQDVDLTNCLTDDEVK 159

Query: 181 QFKS----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ--KTGTI 232
              +        G +  +    LL SGLR S+  +     +        +  +  K    
Sbjct: 160 AILAQPNRRDFVGFRDYVGIVTLLDSGLRISELLKLRAGDIDFQTRFIVLPGEMNKNRKP 219

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINND------KQKMNATQFSIWFKAKATKAGV---N 283
             V +     KLL         FF  +        + ++   F+   K    KAGV    
Sbjct: 220 RMVPISAHTAKLLLQLIEENRQFFSTDRLFMSSFGEPISPNHFNKRLKYYGEKAGVAGKK 279

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            +AH  R   A      GA    +    GW  +     Y +
Sbjct: 280 MTAHVYRHTWARAMVLNGADPFTIQKMGGWADMRTMRRYVQ 320


>gi|239907103|ref|YP_002953844.1| site-specific recombinase [Desulfovibrio magneticus RS-1]
 gi|239796969|dbj|BAH75958.1| site-specific recombinase [Desulfovibrio magneticus RS-1]
          Length = 409

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 55/329 (16%), Positives = 90/329 (27%), Gaps = 39/329 (11%)

Query: 26  RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG 85
           R     R  +        +     A  G     E        P T   L   Y     W 
Sbjct: 59  RILGEIRQNIRRGTGPQSLRDMARAARGEADAAE------AAPLTFGELARRYL---DWA 109

Query: 86  SLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKH----TPSSAIQFLTSM 140
               +S    E     +++          +T        ++       +P +    L  +
Sbjct: 110 KRNKSSWKEDEYLLAKRVLPLFAHRPATSLTRTDTEQFRDALLDAGGLSPMTIKHHLVVI 169

Query: 141 RVLFKWA------VRQEYV---AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           R ++ WA          ++     NP   +  P    E IR  T+E+  +      E   
Sbjct: 170 RRVYNWAASTPVADDPGHMLFEGRNPVSGIRMPLVDNERIRFLTREEADRLLEAAGERLP 229

Query: 192 P-RLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSI----KTQKTGTIITVELPDGFMKL 244
                    L +G+R  +      Q +   N I SI       K      ++     M  
Sbjct: 230 EMHDIILLALLTGMRRQEILGLMWQDVDLVNRIISIPARLTRAKRSRKAFLDEETAAMLQ 289

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---------AHGVRKFSAT 295
                      F      + +    +  F A     G+N            H +R   A+
Sbjct: 290 ARREHAQSPFVFPGAVDGRRDPDHVTRQFDALVNGIGLNNGVTDPKHKVVFHTLRHTFAS 349

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTK 324
             A AGA  H LM   G K++   + Y  
Sbjct: 350 WLAQAGADIHHLMELTGHKSISTMQRYAH 378


>gi|237743743|ref|ZP_04574224.1| DNA integration/recombination/invertion protein [Fusobacterium sp.
           7_1]
 gi|229432774|gb|EEO42986.1| DNA integration/recombination/invertion protein [Fusobacterium sp.
           7_1]
          Length = 343

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 46/277 (16%), Positives = 103/277 (37%), Gaps = 14/277 (5%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           T K +   +  +    +++  +  +  +   ++     D   + +    ++   +     
Sbjct: 66  TFKDVKDLWYSNYS-KTVSDVTLRNVGNQLKKL-EVFNDEKIKDLKLYTLQKFFDDLDSA 123

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE-GIRPWTKEDMQQFKSFWSE 188
             S +   +++ ++F++A++ E++  N    +E  K +     + +T +++         
Sbjct: 124 YGSKLALRSALNMIFEFALKNEFIETNRIKFIELGKNEKVVERKIFTTDEINILFDNLDS 183

Query: 189 GSQ----PRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIIT-VELPDGF 241
            ++       A   L+Y+GLR  +      + +   NNI SI   KT   I  V + +  
Sbjct: 184 DNRFIKKMSYATLILIYTGLRIGELMNLKTEDVDLKNNILSIVESKTIAGIRKVPISEKI 243

Query: 242 MKL-LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISAD 299
           + L        KE F  N    + N   F   F+       +   + H  R   AT+  +
Sbjct: 244 INLFKDNIDYSKEYFLYNKKGGQYNYVNFFQQFQTMLELLNLERHTIHDTRHTFATLLNN 303

Query: 300 AGATAHELMATYGWKTVDQAE-TYT-KGADRIRLGIK 334
           A A +  ++   G       E  YT K  + +R  + 
Sbjct: 304 ANANSTSIIKLIGHSDFSMTENVYTHKDIEELRKAVN 340


>gi|261337550|ref|ZP_05965434.1| tyrosine recombinase [Bifidobacterium gallicum DSM 20093]
 gi|270277960|gb|EFA23814.1| tyrosine recombinase [Bifidobacterium gallicum DSM 20093]
          Length = 329

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 91/302 (30%), Gaps = 48/302 (15%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126
              ++ EY +       L+ N+  ++     +        G   + ++TT  +R  +   
Sbjct: 11  FAPMVEEYARYLRANMGLSENTVRAYAKDAVRCCTALHAMGISGFEQVTTDALRDWMAQE 70

Query: 127 KH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
               + +S  +   ++R  F W       A +P  ++  PK          ++  Q    
Sbjct: 71  AQITSRTSLARRTVAVRRFFGWMAEHGKTATDPAAALHIPKAAHYLPDVLNEQQAQTLME 130

Query: 185 F------------------------------WSEGSQPRLAFEFLLYSGLRCSDSCRAGV 214
                                           +   +     E L  +G+R ++     +
Sbjct: 131 QVDDEAGARGAVAQPQADGEQHDGKAQTPQQHALAQRDCAMVELLYATGIRVAELTGLNM 190

Query: 215 QHLQNNIFSIKTQKTGTIIT-----VELPDGFMKLLA------MTPIGKETFFINNDKQK 263
             +  +  +I+    G         +         +             +  F+ +   +
Sbjct: 191 ADVHADNRTIRVTGKGNKQRVVPYGIPAQRALDAWMEHGRAVLAAVSSGDALFLGSRGGR 250

Query: 264 MNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           ++          +A +AGV + S H +R  +AT   D GA   E+    G  ++   + Y
Sbjct: 251 IDQRIVREVVHREAQRAGVPDISPHALRHSAATHLLDGGADLREVQEMLGHSSLRTTQRY 310

Query: 323 TK 324
           T 
Sbjct: 311 TH 312


>gi|187933384|ref|YP_001886557.1| tyrosine recombinase XerD [Clostridium botulinum B str. Eklund 17B]
 gi|187721537|gb|ACD22758.1| tyrosine recombinase XerD [Clostridium botulinum B str. Eklund 17B]
          Length = 292

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 30/226 (13%), Positives = 75/226 (33%), Gaps = 15/226 (6%)

Query: 112 RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
            K+T       +     +  S  + + S+R  + +   Q  +   P +  +  K   +  
Sbjct: 47  DKLTVMAYIQYLLESGKSERSINRIVISLRSFYSYLKSQSLINEVPKIEYKSSKNNRKLP 106

Query: 172 RPWTKEDMQQF----KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-T 226
           +  T +++ +     +    +G +     E +  +G++ S+     V  +   +  ++ T
Sbjct: 107 QILTVDEVDKIIRTVEKDCPKGIRDNALLELMYATGMKVSELISLNVDDINLELHFVRCT 166

Query: 227 QKTGTIITVELPDGFMKLL--------AMTPIGKETFFINNDKQKMNATQFSIWFKAKAT 278
                   + +     + L         +   G    F+N +  K+         K  + 
Sbjct: 167 DSRNFERLIPIGRSACRALNEYLSIRYKIAECGVPNLFVNLNGNKLTRQGIWRIVKEYSK 226

Query: 279 KAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           +A ++K    +  R   A      GA    +    G + +   +TY
Sbjct: 227 RAHIDKDVNLNTFRHSFAVHLLQNGANVRAVQKLLGNQVLTYMDTY 272


>gi|239906070|ref|YP_002952809.1| site-specific recombinase [Desulfovibrio magneticus RS-1]
 gi|239795934|dbj|BAH74923.1| site-specific recombinase [Desulfovibrio magneticus RS-1]
          Length = 398

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 51/312 (16%), Positives = 100/312 (32%), Gaps = 30/312 (9%)

Query: 58  REYINSPRKKPTTLKWLISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT 116
           +E          T+  L   Y ++        V  R  +E +   ++          +  
Sbjct: 82  KEIARDRAMTDRTIAELADAYFEAKGDALKGVVTDRNRYEKHVRPLLGGFRASKLSPLDM 141

Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS--VERPKRKTEGIRPW 174
             +R  +E R    ++    L  +R +  +  +       P L+  +E PK+  E +   
Sbjct: 142 ARLRKTMEGRAA--ATVWNVLELVRRIVNFGTKAGLC---PALTFTIEMPKKDNEVVEYL 196

Query: 175 TKEDMQQFKSF---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKT 229
             E   + K+    W      R   E  ++SG+R  +  +  ++ L     + SI+  K 
Sbjct: 197 EPEQAARLKAVLDEWPSRDAAR-MLEVAMFSGMRRGEVFKLRIRDLDFRAGLISIRDPKG 255

Query: 230 GTIITVELPDGFMKLLA-------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
           G  ++V +       L                 F   D  +  A   +   K     AG+
Sbjct: 256 GKTVSVPMNPITRAALEDQLAWKEEAFPDSSYVFPGKDGAQRVACSAASRIKQA---AGI 312

Query: 283 NKSA---HGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGA--DRIRLGIKNS 336
                  HG+R   A   A++G  T   +      K+      Y +     + R   K +
Sbjct: 313 PARFRIFHGLRHHFAVTLANSGEFTLDMIGELLTHKSTAMTRRYGQFLPDAKKRASDKAA 372

Query: 337 RRISSVVDSDDP 348
             +++      P
Sbjct: 373 ELLTNHAGLGKP 384


>gi|154487218|ref|ZP_02028625.1| hypothetical protein BIFADO_01059 [Bifidobacterium adolescentis
           L2-32]
 gi|154085081|gb|EDN84126.1| hypothetical protein BIFADO_01059 [Bifidobacterium adolescentis
           L2-32]
          Length = 287

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 56/292 (19%), Positives = 107/292 (36%), Gaps = 21/292 (7%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH- 128
           T+  +I+ +        L   +R  + S   + +R   D     +  K     V +    
Sbjct: 3   TVSDMIAGFLA-----GLTPGTRAGYRSVVSRWLRWCADNGIDMLRAKRTHIEVFAAYDG 57

Query: 129 --TPSSAIQFLTSMRV---LFKWAVRQEYVAINPCLSVERPKRKTEGIRP-WTKEDMQQF 182
              P++      ++ V   L+++   + Y+  NP   V RPK          T+E  + F
Sbjct: 58  GMRPAAKNTVCRNLSVVCCLYRYLCEEGYIDCNPGEHVRRPKLYGHSDGTYLTREQARLF 117

Query: 183 KSFWS-EGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIK-TQKTGTIITVELP 238
            +     G++       LL +G R  ++    V+  HL +    ++  +K      V +P
Sbjct: 118 LTEARGMGARTDALCSLLLLTGARVGEALGLDVEDCHLNDGRPWVRFDRKGDWSQRVAIP 177

Query: 239 DGFMKLLAMTP--IGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSAT 295
               + LA       +   F  +   ++          + A + GV + S H +R+   T
Sbjct: 178 SDAAEALARLIGERRRGAVFREDSGARLRQQTAVGIVSSVALRVGVPDISPHSLRRTFCT 237

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
           +S DAG    ++MA  GW +    + Y     R  L  K    +   +  +D
Sbjct: 238 LSRDAGVPDRDIMAAGGWNSPQMLDYY--DMSRRGLNGKAGDGLQDYLGEED 287


>gi|322384294|ref|ZP_08058003.1| phage integrase-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321150942|gb|EFX44368.1| phage integrase-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 413

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 50/334 (14%), Positives = 108/334 (32%), Gaps = 58/334 (17%)

Query: 65  RKKPTTLKWLIS-----EYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKH 118
           + +  TLK  I      +Y       +L+  +  ++  + +  I+   G      I T H
Sbjct: 71  KPEKMTLKQFIENEWEPKYASKP--KNLSPLTYKTYMHHIENHIMPTFGHKFLGDIKTLH 128

Query: 119 IRSGVESRKH------------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
           I + ++                +P +       ++ +   A   + +  NP + V++PK 
Sbjct: 129 IVTFIDDLGKPGSRKDNKGDTLSPGTIQFIYRVLKNILTRATEWQLIKSNPTVGVKKPKV 188

Query: 167 -KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFS 223
            +T+      KE  +  K+ + E  + RL     +  G R  +        +   N   S
Sbjct: 189 EQTQLDFYDEKEAREVIKALYQEPRRWRLLILGAMLGGCRRGELVGLEWSDVDFENKTIS 248

Query: 224 IK---------------TQKTGTIITVELPDGFMKLLAMTPI----------------GK 252
           I+                +   +I T+++P  +M  L                      +
Sbjct: 249 IRKSISLTVDSRAIEKEPKSKSSIRTIDMPQWYMVELKEYEREWKKEKLSVGDKWIGGDR 308

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATY 311
              F     +    +  S W+     +  + +   H +R  SAT+  +AGA+   +    
Sbjct: 309 RYVFHAGLGKPYFYSYPSEWWSKFIKRHDLKRVRFHDLRHSSATLLIEAGASMKAIQQRL 368

Query: 312 GWKT-VDQAETYTKGADRIRLGIKNSRRISSVVD 344
           G       A+ Y       ++  + + +      
Sbjct: 369 GHSKHQTTADVYAHVT--KKVSRETAEKFDKFAP 400


>gi|227503375|ref|ZP_03933424.1| site-specific tyrosine recombinase XerC [Corynebacterium accolens
           ATCC 49725]
 gi|227075878|gb|EEI13841.1| site-specific tyrosine recombinase XerC [Corynebacterium accolens
           ATCC 49725]
          Length = 305

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 41/266 (15%), Positives = 84/266 (31%), Gaps = 22/266 (8%)

Query: 85  GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMR 141
              A  +   + +    +   I    DF+   +  + + + V   K   + A +   S++
Sbjct: 32  KGRAEATVRGYRADLKNLAQDIDTFADFNLNNL-RQWLGNAVAEGKARATLARRT-ASVK 89

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM-----QQFKSFWSEGSQPRLAF 196
               WA R+ Y+  +    +  PK           +              +   +     
Sbjct: 90  AFSTWAEREGYLTRDVAARLVTPKVGQHLPTVMAPQQAGELVGNAVSVDEAHFQRDSAIL 149

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-----ELPDGFMKLLAM---- 247
           E L  SG+R ++  R  ++ +     + +    G    V        D   + +      
Sbjct: 150 ELLYASGMRVAELVRLDIEDVDFKRSTARVTGKGNKQRVVPFGAAATDALQQWIDGGRKE 209

Query: 248 -TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAH 305
                 +  F+ +   +++  Q        AT  G    + HGVR  +AT   + GA   
Sbjct: 210 MARGETQAIFVGSRGARIDQRQVRRIVDKAATVTGTSGLTPHGVRHLAATHLLEGGADLR 269

Query: 306 ELMATYGWKTVDQAETYTKGADRIRL 331
            +    G  ++   + YT      RL
Sbjct: 270 VVQELLGHSSLSTTQIYTH-VSAKRL 294


>gi|134045801|ref|YP_001097287.1| phage integrase family protein [Methanococcus maripaludis C5]
 gi|132663426|gb|ABO35072.1| phage integrase family protein [Methanococcus maripaludis C5]
          Length = 287

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 47/285 (16%), Positives = 107/285 (37%), Gaps = 22/285 (7%)

Query: 74  LISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRKHTP 130
           L+ +Y     +  SL+ +S   +++  +  ++   D    +  +T +       S   + 
Sbjct: 8   LVKKYL---EFHTSLSKDSLKYYKAGLNAFMKYFPDENKSWENLTVEDAIFFYRSYNVSK 64

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLS-VERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
           ++ I+ L  +   + WA++Q+Y+  NP  + V   + + +     T++  +   S   + 
Sbjct: 65  NTKIRRLNDVNRFYNWAMKQKYLVENPIETFVTTLRPEKKERAYLTEKQFKILLSNVKDF 124

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLA- 246
           +       FLL +G+R S+     V+ +   N I  I   K      V +       L  
Sbjct: 125 NY-YTYTLFLLKTGVRISEFVNLKVKQVDFENGIIFIHAGKGAKDRYVFMDVELASRLEY 183

Query: 247 ------MTPIGKETFFINNDKQKMNATQFSIW--FKAKATKAGV--NKSAHGVRKFSATI 296
                 +T +    FF+N   +K+   Q + +  +  +     +    + H +R   AT 
Sbjct: 184 YLEMRILTNLSCNNFFVNKHGRKLAEDQITKYTDYLNEVMDGSISFRITPHILRHTFATA 243

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
             + G     L    G + +     Y    ++  L  +  + ++ 
Sbjct: 244 MLEKGMDLKSLSLILGHEDIKTTSQYLHK-NKEALQKEYLKAMAR 287


>gi|114706518|ref|ZP_01439419.1| tyrosine recombinase [Fulvimarina pelagi HTCC2506]
 gi|114537910|gb|EAU41033.1| tyrosine recombinase [Fulvimarina pelagi HTCC2506]
          Length = 319

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 36/239 (15%), Positives = 69/239 (28%), Gaps = 19/239 (7%)

Query: 109 FDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168
            D + +  +   +          S  + L+ +R   +   ++   +     ++  PK+  
Sbjct: 62  ADLKPMDLRSFLAARRRDGAGARSLGRGLSGIRSFLRHLEKRGLASSAGAKAMRAPKQTK 121

Query: 169 EGIRPWT-------KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221
              RP +        E+   F +    G++       L   GLR S++       L + +
Sbjct: 122 GLPRPLSVAGALDVTEEADAFSTEPWVGARDVAVLTLLYGCGLRISEALTLRGDALTDEM 181

Query: 222 FS--IKTQKTGTIITVELPDGFMKLLAMTPI-------GKETFFINNDKQKMNATQFSIW 272
                   K G    V L     + +A                F       +        
Sbjct: 182 ARSMTIRGKGGKTRLVPLIPAVHEAVATYRRLCPHDLDAGHPLFRGVRGGPLRPQIVQRN 241

Query: 273 FKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADR 328
                   G+    + H +R   AT    AG     +    G  ++   + YT   ADR
Sbjct: 242 MARLRGAFGLPPSATPHALRHSFATHLLAAGGDLRTIQDLLGHASLSTTQAYTAVDADR 300


>gi|29830251|ref|NP_824885.1| phage integrase [Streptomyces avermitilis MA-4680]
 gi|29607362|dbj|BAC71420.1| putative tyrosine-family recombinase/integrase [Streptomyces
           avermitilis MA-4680]
          Length = 393

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 66/372 (17%), Positives = 118/372 (31%), Gaps = 46/372 (12%)

Query: 13  KERTRHGKIIYYFRKGHG--RRIRLPYPHES--------TFIPAYMSALTGSTPKREYIN 62
           ++R  +G    + RK      R+ +P P  +        T      +       +     
Sbjct: 4   RKRNPNGSGSIWQRKDGRYEARVYVPQPDGTRKRKTVYGTTWEECDTKRQELVLRDRQGI 63

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRS 121
               +   L   +  + K        +++   +E      ++   G      ++   +R 
Sbjct: 64  PTPTRSAKLSEWLPYWLKHYVEPRRKLSTYDKYEVQVRLYLVPLLGTRRLESLSVADVRR 123

Query: 122 GVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
            +      HT ++A +    +R     AVR+E +  N    VE P+ K   IRPW+ E+ 
Sbjct: 124 FITRVQNAHTAATAKESHRVLRTALTAAVREELITRNVASLVEPPRVKQREIRPWSLEET 183

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQ---------- 227
             F    +       AF   +  GLR  +        +   N +  ++ Q          
Sbjct: 184 LSFLE-AARSDPLYAAFVLAIAMGLRRGELGGLRWSDVDLDNRVVHVRQQTQRRRGTLYD 242

Query: 228 ---KTGTIITVELPDGFMKLLA-MTPIGKETF-------------FINNDKQKMNATQFS 270
              K+  I  V +P   +  L       +ETF             F   + + +      
Sbjct: 243 DDPKSRRIRVVPMPALCIAPLRWHRLRQRETFARTGVAWCEAGYVFATRNGRPVEPRNVY 302

Query: 271 IWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGA-D 327
             F   A  AG+     H  R   AT+   AG     +M   G   +    + YT    D
Sbjct: 303 RSFTRVAADAGLRVVRLHDARHGCATLLTAAGVAPRVIMEILGHSQISITMDVYTHVVHD 362

Query: 328 RIRLGIKNSRRI 339
             R  I +  R+
Sbjct: 363 TQREAISHMDRL 374


>gi|251779032|ref|ZP_04821952.1| phage integrase [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|243083347|gb|EES49237.1| phage integrase [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 335

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 41/263 (15%), Positives = 87/263 (33%), Gaps = 23/263 (8%)

Query: 78  YRKSAHWGSLAVNSRISFES-------YFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
           Y        L+  +  +++        YF +     G  D R          +  +   P
Sbjct: 65  YLACKKLEGLSPKTLNNYKLFLIKLNMYFTKPCSTIGTMDLRMFL------ALLGKGKQP 118

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           S+   ++T ++  F W   +EY+  NP   +++ K      + +  E++++ +       
Sbjct: 119 STVNGYITCLKNFFGWLQNEEYIIKNPAFRLKQTKVPKVVRQGYKAENLEKLREACKT-E 177

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-----ELPDGFMKLL 245
           + +  FE L  +  R S+     +  +  +  SIK    G+   +              +
Sbjct: 178 REKALFELLDSTACRISEIQNIKLPDINWHEKSIKVLGKGSKERIVYFSTRAKLALENYI 237

Query: 246 AMTPIGKETFFINNDKQKMN--ATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAG 301
                   + FI+   +             K    ++GV +   AH  R+  AT   + G
Sbjct: 238 KDRSDNNNSLFISKKFKNKTIGVRSLQNIIKKIYERSGVTERVYAHKFRRTQATRLLNQG 297

Query: 302 ATAHELMATYGWKTVDQAETYTK 324
                +    G  T    + Y +
Sbjct: 298 MRIEGVQGILGHTTPTTTQIYAQ 320


>gi|295099411|emb|CBK88500.1| Site-specific recombinase XerD [Eubacterium cylindroides T2-87]
          Length = 583

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 51/341 (14%), Positives = 110/341 (32%), Gaps = 38/341 (11%)

Query: 10  FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
           F+  + TR    I+Y  +    + R+                       + +  P+ +  
Sbjct: 233 FIETDETRWDATIWYLERFRIAKERINQSDSIE------------KISFQEVLQPKNRL- 279

Query: 70  TLKWLISEYRK-SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128
               L+ EY K     G LA+++           +++  + +  K  T  I   +++ ++
Sbjct: 280 ----LLQEYMKYEIGIGELALSTVYERFRTIRNFLQEISELEVTKCDTSLIDVYLKNLQN 335

Query: 129 TPSSAIQF---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED---MQQF 182
               A  F   ++ ++   K+   + Y+   P  +    +++       + E+   M+  
Sbjct: 336 GAMGAKTFNTNVSGIQFFMKFLEVKGYIKKVPFYASYYLEKQIPVHHDRSVEEDVYMEII 395

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELP 238
           ++        R+ F  L   GLR S+ C            +    +   K      V +P
Sbjct: 396 QNLSQFPEHLRMMFLHLWCVGLRISEVCTLKGDAYYIQNGDCWMKVYQVKMKNYKRVPIP 455

Query: 239 DGFMKLLAMT----PIGKETFFINND-KQKMNATQFSIWFKAKATKAGVNK-----SAHG 288
               +L+ +     P  KE +   N      + + F    K   ++ G+        +H 
Sbjct: 456 VTLYRLMQVYLKKHPTEKEAYIFRNRKGGAFSKSTFMGQMKKYCSQIGIQNGEYIFKSHD 515

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            R   AT   + G +   +    G    +    Y     R 
Sbjct: 516 YRHTVATNFYEHGVSIQSIRDYLGHTFEEMTMQYIDYMPRK 556


>gi|205320825|gb|ACI02940.1| TnpF [uncultured bacterium HH1107]
          Length = 221

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 66/172 (38%), Gaps = 10/172 (5%)

Query: 161 VERPKRKTEGIRPWTKED-MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN 219
           +ERPK++       ++E+ ++  ++   E  + +     +  +GLR S+     ++ + +
Sbjct: 34  IERPKKEKTLPVVMSEEETIRVLRAI--ENVKHKAILMTIYSAGLRISECINLKIKDIDS 91

Query: 220 NIFSIK--TQKTGTIITVELPDGFMKLLAMTPIG---KETFFINNDKQKMNATQFSIWFK 274
               I+    K        L +  + +L    +    K+  F        ++      FK
Sbjct: 92  KRMQIRIEQSKGKRDRYTILSEKTLIILRTYFMEYKPKDYLFEGQKGGAYSSRSIQNIFK 151

Query: 275 AKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           A   KA + K  + H +R   AT   + G +   + +  G  +    E YT 
Sbjct: 152 AAVLKAKIQKEVTVHTLRHSFATHLLENGTSLRYIQSLLGHSSSKTTEVYTH 203


>gi|304394166|ref|ZP_07376089.1| tyrosine recombinase XerD [Ahrensia sp. R2A130]
 gi|303293606|gb|EFL87983.1| tyrosine recombinase XerD [Ahrensia sp. R2A130]
          Length = 308

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 44/271 (16%), Positives = 86/271 (31%), Gaps = 31/271 (11%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITT--KHIRSGVESRKHTPSSAI---QFLTS 139
              A N+   +            +     +    +H+R  +     +  +A    + L++
Sbjct: 18  RGAAANTLSGYGRDLADYSAHCRNTRTTVMDAGAEHVRGWMARLADSGCAASTQARKLSA 77

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ------PR 193
           +R L+++         +P  +V+RPK      +  ++ D+ +      + ++       R
Sbjct: 78  VRQLYRFLFSDGLREDDPTATVDRPKTGRPLPKVISEIDVDRLLGAAQDAARKGETSAAR 137

Query: 194 LA-------FEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLL 245
           L         E L  SGLR S+        +     F   T K      V +    ++ +
Sbjct: 138 LRAARTLALLELLYASGLRVSELVALRSATITPQTRFVNVTGKGAKERLVPISAAALEAV 197

Query: 246 AM---------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFS 293
                             F   +    +    F+   KA AT AG+  S    H +R   
Sbjct: 198 EAYRQAARDHKQAPSAWLFPSRSAAGHITRQHFARDLKALATSAGLPASKLSPHVLRHAF 257

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324
           A+     GA    +    G   +   + YT 
Sbjct: 258 ASHLLQNGADLRAVQQLLGHADIATTQIYTH 288


>gi|312195374|ref|YP_004015435.1| integrase family protein [Frankia sp. EuI1c]
 gi|311226710|gb|ADP79565.1| integrase family protein [Frankia sp. EuI1c]
          Length = 304

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 47/271 (17%), Positives = 93/271 (34%), Gaps = 19/271 (7%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISF----ESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
           L  L+ ++R+     + +  +  S+    ES+   +  +        I  +H+ + + S 
Sbjct: 12  LTTLLPDWRRHLRALNRSPATIQSYLTVGESFVGYLTEQGMPRSAGAIAREHVEAYLVSL 71

Query: 127 KHTPSSA--IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
               S+A   +   S++ LF+W V    ++  P   +  P    + +     + +++   
Sbjct: 72  SERVSAATVAKHYRSLQQLFRWLVEDGEISRTPFERMSAPAVPEQPVPILGDDVLRKLLD 131

Query: 185 FWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVEL-- 237
                  E  +        L +G+R  +     V  L  ++  +    K      V    
Sbjct: 132 ACKGNSFENRRDAAIIRLFLDTGVRIGELVGLSVDDLDFDHDVAHVMGKGRRGRAVPYGN 191

Query: 238 --PDGFMKLLAMTPI---GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRK 291
              D   + +         K        K  M ++  S   + +A  AGV K  AH  R 
Sbjct: 192 RTADALRRYIRARARHGQAKSPALWLGKKGPMTSSGISQMLERRAADAGVPKLHAHQFRH 251

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETY 322
             A     AG    +LM   GW++ +    Y
Sbjct: 252 TFAHAWLAAGHQEQDLMRLAGWRSREMVGRY 282


>gi|330812148|ref|YP_004356610.1| putative phage integrase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327380256|gb|AEA71606.1| putative phage integrase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 377

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 51/290 (17%), Positives = 107/290 (36%), Gaps = 27/290 (9%)

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119
           YI     +  TL+  + +Y +     +    ++ +  +   Q+IR  G +    ++++ I
Sbjct: 71  YIQRSGSERLTLEKALQQYLREVS-PTKKPTTQRAEATKAQQLIRHLGKYSLAALSSEVI 129

Query: 120 RSGVESR------KHTPSSAIQF---LTSMRVLFKWAVRQEY---VAINPCLSVERPKRK 167
            +  ++R      +  P+S       L  +  LF  A+ QE+   +  NP L++ +P   
Sbjct: 130 ANYRDTRLGSLTNRGNPTSNNTVRLELALLSHLFTVAI-QEWGLGLTFNPVLNIRKPSPG 188

Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225
               R  + E+ ++  +  +  S P L       L +G+R S+        +      ++
Sbjct: 189 EGRDRRLSPEEERRLLAAVNNHSNPMLGWIVRIALETGMRSSEITGLRRHQIDLKRRVVR 248

Query: 226 TQ--KTGTIITVELPDGFMKLLAMT------PIGKETFFINNDKQ--KMNATQFSIWFKA 275
               K  +  TV L                 P   +  F     +  K     F+  +  
Sbjct: 249 LSDTKNDSARTVPLSRLATVTFQAALENPTRPQDCDLVFFGEPGKDGKRRPYAFTKVWGV 308

Query: 276 KATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              K G+ +   H +R  + +   + G +  E+ A  G K++   + YT 
Sbjct: 309 LKKKFGMPDLRFHDLRHEAVSRFVEGGLSDQEVSAISGHKSMQMLKRYTH 358


>gi|229497057|ref|ZP_04390761.1| site-specific recombinase, phage integrase family/ribosomal subunit
           interface protein [Porphyromonas endodontalis ATCC
           35406]
 gi|229315982|gb|EEN81911.1| site-specific recombinase, phage integrase family/ribosomal subunit
           interface protein [Porphyromonas endodontalis ATCC
           35406]
          Length = 398

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 39/275 (14%), Positives = 94/275 (34%), Gaps = 25/275 (9%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFE----SYFDQIIRKSGDFDYRKITTKHIRSGVES---- 125
           I  +     +  + + ++  ++E     Y   +    G+        + +  G  S    
Sbjct: 6   IERFLGYLRYERNQSEHTVAAYELDLQQYVRYVEEVLGEEFVPSDGDRDLIRGFLSSLIE 65

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM------ 179
           +    SS  + L+S++  +++ V+   +  +P   V  P+ ++      +++++      
Sbjct: 66  QGRKRSSVHRKLSSLKSYYRYLVKIGLLEQSPARLVRGPRGESPLPAVLSEQEISNLLYA 125

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELP 238
           Q+         + +L  E    +G+R S+        +  +   ++   K      +   
Sbjct: 126 QEVDKDDFVALRNQLILEMFYETGMRRSELVGLLEGGVDLSSRVLRVFGKGRKERIIPFG 185

Query: 239 DGFMK------LLAMTPIG-KETFFINNDKQKMNATQFSIWFKAKATKA-GVNKS-AHGV 289
           D           L    +G  + FF++   Q ++          +     G+ +   H +
Sbjct: 186 DRLAARISEYLALKHQKVGLSQIFFVSLGNQPLSGEVVYQIVHERLQSIPGLARRGPHVL 245

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           R   AT   + GA    +    G K+V     YT 
Sbjct: 246 RHTFATAMLNNGAQLMAVKELLGHKSVATTVLYTH 280


>gi|169825072|ref|YP_001692683.1| putative integrase [Finegoldia magna ATCC 29328]
 gi|167831877|dbj|BAG08793.1| putative integrase [Finegoldia magna ATCC 29328]
          Length = 327

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 41/278 (14%), Positives = 92/278 (33%), Gaps = 14/278 (5%)

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK 117
           +E + S   +  T + L+  +  +      +  S + + +    +  K  +   R+I T 
Sbjct: 36  KEIVESYSVQEDTSEDLLENFLSAKRIEGCSEKSLVYYRNTIQAMRDKV-EKPVREIETN 94

Query: 118 HIRSGV----ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
            +R  +    + +  +  +           F W   ++Y+  +P   + R K  T     
Sbjct: 95  DLREYLTGYQKEKNSSKVTIDNIRRIFSSFFSWLEDEDYIIKSPVRRIHRVKSATTIKET 154

Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233
           ++ E+++  +   SE  +     + L  +G+R  +      + +            G+  
Sbjct: 155 YSDENLETMRDSCSE-LRDLALIDILASTGMRIGELVHLNRKDINFEERECVVFGKGSKE 213

Query: 234 TVELPDG-----FMKLLAMTPIGKETFFIN--NDKQKMNATQFSIWFKAKATKAGVNK-S 285
            +   D        + L          F++      +M         +      G+ K  
Sbjct: 214 RMVYFDARTKIHLQEYLNSRKDDNPALFVSLKAPYDRMKIGGIEARLRGIGRNLGIEKVH 273

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
            H  R+  AT++ D G    +L    G K +D    Y 
Sbjct: 274 PHKFRRTLATMAIDKGMPIEQLQQLLGHKRIDTTLQYA 311


>gi|330468102|ref|YP_004405845.1| integrase family protein [Verrucosispora maris AB-18-032]
 gi|328811073|gb|AEB45245.1| integrase family protein [Verrucosispora maris AB-18-032]
          Length = 333

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 48/308 (15%), Positives = 105/308 (34%), Gaps = 44/308 (14%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG----------- 122
           LI  +  +      + +++ ++      +   + +     +    +R G           
Sbjct: 12  LIEGFLTARATRKPSPHTQAAYRRDLIGVATLAAELTTPPLPLADLRIGALSPGLLRTAF 71

Query: 123 -VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM-Q 180
              +     +S  +  ++    F + V ++ V  NP  +V RP+      +P   ED  +
Sbjct: 72  ARFAADRAAASVGRAWSTWNSFFTFLVAEQVVPGNPMPAVGRPRMPLPQPKPLRGEDTPE 131

Query: 181 QFKSFWSEGS---------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ---K 228
           Q  +  + G          +        L +GLR S+     V  L       + +   K
Sbjct: 132 QLLASAARGEGRQRDPWPERDVAVLALALCAGLRLSELLALRVGSLSGRPGERRVEVAGK 191

Query: 229 TGTIITVELPDGFMKLLAM------------TPIGKETFFINNDKQKMNATQFSIWFKAK 276
            G    + +  G  ++L+             T        ++   + +         ++ 
Sbjct: 192 GGRPRVLPVEPGLDEVLSAYLDSRVRRFGTRTVRPDSPLLVDRRGEPLRRGGLQYLVESC 251

Query: 277 ATKAGVN------KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRI 329
             +AG+          H +R   AT  A+ GA A E+M   G  ++  ++TY +  A + 
Sbjct: 252 YRRAGIGDRVPRGARLHALRHTFATRLAEDGAGAAEIMRLLGHASLASSQTYIEVTAVQQ 311

Query: 330 RLGIKNSR 337
           R  ++ +R
Sbjct: 312 REAVRANR 319


>gi|167768052|ref|ZP_02440105.1| hypothetical protein CLOSS21_02596 [Clostridium sp. SS2/1]
 gi|167710381|gb|EDS20960.1| hypothetical protein CLOSS21_02596 [Clostridium sp. SS2/1]
 gi|291561050|emb|CBL39850.1| Site-specific recombinase XerD [butyrate-producing bacterium SSC/2]
          Length = 322

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 36/265 (13%), Positives = 94/265 (35%), Gaps = 15/265 (5%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS----SAIQFLTSMRVL 143
           +  +   ++   + ++ ++ + + RKITT  +RS +   +   +    +      ++   
Sbjct: 61  SERTIQYYKVTAEHMLSQT-EKEIRKITTDEMRSYLADYQKRNNCSNVTIDNIRRNISSF 119

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203
           F W   ++Y+  +P   + + K KT      T E ++Q +   ++  +     + L  +G
Sbjct: 120 FTWLEEEDYILKSPMRRIHKIKTKTVVKSVITDEGIEQLRDHCTQ-IRDLAMIDLLYSTG 178

Query: 204 LRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDG----FMKLLAMTPIGKETFFIN 258
           +R  +     +  +       +   K      V          M+ +          F+ 
Sbjct: 179 IRVGELVNLNIGDINFEERECVVYGKGDKERRVYFDAKAKVHLMEYIESRKDKNPALFVT 238

Query: 259 --NDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKT 315
                 ++  +   I  +    + G+ +   H  R+  AT + D G    ++    G   
Sbjct: 239 LDAPYDRLKISGVEIRLRQLGRELGLERIHPHKFRRTMATRAIDKGMPIEQVQKILGHSQ 298

Query: 316 VDQAETYTKGADRIRLGIKNSRRIS 340
           +D    Y    ++  +   + + +S
Sbjct: 299 IDTTMQYA-MVNQNNVKASHQKYMS 322


>gi|319648636|ref|ZP_08002848.1| integrase [Bacillus sp. BT1B_CT2]
 gi|317389284|gb|EFV70099.1| integrase [Bacillus sp. BT1B_CT2]
          Length = 405

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 60/380 (15%), Positives = 116/380 (30%), Gaps = 74/380 (19%)

Query: 23  YYFR-----KGHGRR-------IRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
           +Y+R        G+R        R     E          L G+  + + I         
Sbjct: 23  WYYRYDIVDPTTGKRKQKEVGGFRTKAEAEEEAKRIQYELLQGTYIEEKEITFEEFAK-- 80

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
            +WLI  + +  + G + V++    +    +++        + IT K  +  +   K   
Sbjct: 81  -EWLI--WYE--NTGKVKVSTIRVRKHEISRLMDYFQYLKMKDITRKQYQEALNDLKARG 135

Query: 131 SSAIQFLTSMR---VLFKWAVRQEYVAINPC---------LSVERPKRKTEGIRPWTKED 178
            +      + R   ++FK A+  E +  +P           +VE  +R+ E  +   KE+
Sbjct: 136 YAENTIDGAHRTGRMIFKRAIELEVIKTDPTEYAIVPKVQKTVEELEREKELPKYLEKEE 195

Query: 179 MQQFKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------ 229
           +  F S   +     +    F  L Y+G+R  + C      +     +I   KT      
Sbjct: 196 LAHFLSIIPDHQMDIRDYPIFLTLAYTGMRAGELCALKWSDIDFEEQTISITKTYYNPRN 255

Query: 230 --------------GTIITVELPDGFMKLLAMTPIGKET-------------FFIN---- 258
                            +     D  ++L  +    KE               F      
Sbjct: 256 AIKEYELLTPKTKKSKRVIDVTKDVLIELDKLRKAQKEVQMKHRKTYHNEGFVFAQLDEV 315

Query: 259 NDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTV 316
           N           I  K     A +N   + H +R    ++ A+AG +  ++M   G    
Sbjct: 316 NAGYPAYVKLIEIRMKRLLKIANLNPSLTPHSLRHTHTSLLAEAGVSLEQIMDRLGHTDD 375

Query: 317 DQAE-TYTKGADRIRLGIKN 335
           D  +  Y       +    +
Sbjct: 376 DTTKNIYLHITKPKKKEASH 395


>gi|317481288|ref|ZP_07940359.1| phage integrase [Bacteroides sp. 4_1_36]
 gi|316902621|gb|EFV24504.1| phage integrase [Bacteroides sp. 4_1_36]
          Length = 366

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 35/297 (11%), Positives = 91/297 (30%), Gaps = 22/297 (7%)

Query: 41  STFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD 100
             F   Y         +    +   ++  TL      Y +       + ++  ++ +YF 
Sbjct: 60  PDFYDRYSPHAYIDYSRVYVRHPKPQREYTLP---EGYLELLEQKRYSPSTIKTYRAYFS 116

Query: 101 QIIRKSGDFDYRKITTKHIRSGV----ESRKHTPSSAIQFLTSMRVLFKWAV--RQEYVA 154
             +      +   +    I   +      +K + S     + +++  ++     +++Y  
Sbjct: 117 DFMEYHKGRNIDHLKVADINKYILYLVNEKKISVSQQNMRINAIKFYYEQVKGGKRQYYG 176

Query: 155 INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGV 214
                 + R K         ++ ++ +  +  S     R     +  +GLR S+      
Sbjct: 177 -----GITRAKEYKSLPEVLSRNEVARILACLSNRKH-RCMISLIYSAGLRRSELLNLTP 230

Query: 215 QHLQNNIFSIKTQKTGTI-----ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF 269
           + + +    ++    G       ++ +L     +        K  F      ++ +A+  
Sbjct: 231 KDIISERMLVRIMGKGRKCRYSLLSEKLLKELREYFKEYRPQKWLFEGETPGEQYSASAL 290

Query: 270 SIWFKAKATKAGVNKSAHG--VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
               K  A++AG+    H   +R   AT   + G     +    G   +     Y  
Sbjct: 291 VKILKEAASRAGIKHRVHVHMLRHSFATHLLEQGTDLRTIQELLGHNDIKTTSIYLH 347


>gi|323340466|ref|ZP_08080721.1| tyrosine recombinase XerC [Lactobacillus ruminis ATCC 25644]
 gi|323092010|gb|EFZ34627.1| tyrosine recombinase XerC [Lactobacillus ruminis ATCC 25644]
          Length = 372

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 42/357 (11%), Positives = 105/357 (29%), Gaps = 36/357 (10%)

Query: 23  YYFRK-----GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISE 77
           +  R         RR +      +    A  S    S   ++  ++   K  +      E
Sbjct: 12  WRVRISWYDSTGTRRFKSKAGFST---KAEASRWARSMEIKKDDSTITDKSVSFAQYFDE 68

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HTPSSAIQ 135
           + ++     ++  +   +     ++    G     +IT +  +  +      H P S  +
Sbjct: 69  WFRTYKENKISYITAGKYRVIQSKLAEFYGSRKIDEITRRDYQRFINEYGACHAPESVKK 128

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP--WTKEDMQQFKSFWSEGSQPR 193
             + +R   K A+  + +  +   +VE         +       ++ +  ++      PR
Sbjct: 129 TNSIIRSCVKSAILDDLITKDFTQNVELVWNSDREHKVDYLNVNEINKLAAYLESKLDPR 188

Query: 194 LAFEFLLYS----GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT--------------V 235
               +++Y+    G+R  +        +  N  +I   K    +               +
Sbjct: 189 YTSYYMIYTAIMTGMRLQEIAALTWDDINFNWKTIDINKAWDFVLKKYIPTKTESSTRII 248

Query: 236 ELPDGFMKLLAMTPIGKE-TFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRK 291
            +    + ++A          F N       +   +   +    + G+NK     H +R 
Sbjct: 249 RVNSKLLDIIAQLKSNHSGMVFCNASGTIPTSAGCNKTLRKSLRQLGINKPSYHFHALRH 308

Query: 292 FSATISADAGATAHELMATYGWKTV-DQAETYTKGADRIR-LGIKNSRRISSVVDSD 346
               +    G   + +    G   +      Y    D +R     +   I + V  +
Sbjct: 309 SHVALLLYKGVDIYAISKRLGHSDLTTTTRRYAYLIDELRQKADDDIENILNNVGIE 365


>gi|118616367|ref|YP_904699.1| prophage integrase [Mycobacterium ulcerans Agy99]
 gi|118568477|gb|ABL03228.1| prophage integrase [Mycobacterium ulcerans Agy99]
          Length = 389

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 60/354 (16%), Positives = 119/354 (33%), Gaps = 48/354 (13%)

Query: 8   PPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFI-------------PAYMSALTGS 54
           P  + K     G+  Y  R        +  P   +                A+ S     
Sbjct: 6   PRGIRKRLNAAGEPRYQVR------YLIRDPDAPSGWVETSATFPTLREAKAFKSERDNE 59

Query: 55  TPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRK 113
                    PR   T L  + +++  S    +++  +   +  +++ +I  + G     +
Sbjct: 60  AALGARRFDPRLGRTPLSRIWTQFSDSKK-PAVSPKTWSGYNQHWELRIKPRFGHVPVDE 118

Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR-KTEGIR 172
           IT   +R+ V+     P + +  L  +R +   A +   +  NP L V   +  + E  R
Sbjct: 119 ITRADVRAFVDGLTVGPWAKVSTLRLLRSILDVAHQDGRIHRNPALGVSAGRIPERERHR 178

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-------------- 218
             T ++++   +   +          L Y+GLR S+     V+ +               
Sbjct: 179 YLTAQEVRMLATACGD---QGDVVTILAYTGLRWSEPVGLRVKDIDLTARRLYVRRAAPE 235

Query: 219 -NNIFSIKTQKTGTII-TVELPDGFMKLLAMTPIGK--ETFFINNDKQKMNAT----QFS 270
                 I   KT   I TV LP   + +      G+  +   + +    M  +    + +
Sbjct: 236 VEGHIVIGPPKTRAGIRTVPLPQVVVDIFKGRITGQAPDQPAVTSTNGAMLRSNNWRRHT 295

Query: 271 IWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYT 323
            W KA  +      + H +R   A+++  +GA    +  T G  T    A  Y+
Sbjct: 296 HWNKALKSTDLAPLTIHDLRHTYASLARKSGADLRYVQKTMGHSTPTVTANIYS 349


>gi|194449272|ref|YP_002045468.1| phage integrase family protein [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194407576|gb|ACF67795.1| phage integrase family protein [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
          Length = 404

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 42/255 (16%), Positives = 79/255 (30%), Gaps = 21/255 (8%)

Query: 93  ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQ 150
            S+    +    +             +   +   K     ++A  +   +R     A R+
Sbjct: 125 RSYHGRAELTFEEIDKKFLEGFRKYLLEEPLTKSKSKLAKNTASSYFNKVRAALNEAYRE 184

Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210
             +  NP   V+  K +       T ++++            + AF F   +GLR SD  
Sbjct: 185 GIIRDNPVQRVKSVKAENTKRTYLTLDEVRAMTKAECRYDVLKRAFLFSCTTGLRWSDIN 244

Query: 211 RAGVQHLQN-----NIFSIKTQK----TGTIITVELPDGFMKLLAMT---PIGKETFFIN 258
           +     ++             QK      +++ ++LPD  + LL +          F   
Sbjct: 245 KLTWSEIEEFEPGHYRIIFDQQKLKNGGNSLVYLDLPDSAVTLLNIQNKEGPDDRVFVGL 304

Query: 259 NDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTV 316
                MN           A +AG+ K  + H  R   A    + G   + L    G   +
Sbjct: 305 KYNSYMNVALLQ-----WAMRAGITKHVTFHAGRHTFAVAQLNRGVDIYSLSRLLGHSEL 359

Query: 317 DQAETYTKGADRIRL 331
              E Y    +  R+
Sbjct: 360 RTTEIYADILESRRV 374


>gi|118443064|ref|YP_879283.1| phage integrase family site specific recombinase [Clostridium novyi
           NT]
 gi|118133520|gb|ABK60564.1| site-specific recombinase, phage integrase family, putative
           [Clostridium novyi NT]
          Length = 387

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 56/386 (14%), Positives = 119/386 (30%), Gaps = 66/386 (17%)

Query: 12  TKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT- 70
            +++T + K  Y++R  H     L  P        Y   +     K + I        T 
Sbjct: 6   YRKKTVNNKEYYFYRLRHK---NLKKP-----KDIYAKTVKELDSKIKMIIKELDNNITN 57

Query: 71  ----LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK--SGDFDYRKITTKHIRSGVE 124
                     ++  + H  +   ++   ++S F   I      D   +++    I++   
Sbjct: 58  NKEYFGAFFKDWLYNTHMINKKPSTIERYDSIFRNYIEDSIIYDIKLKELNPSDIQNYYN 117

Query: 125 ---SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK-------RKTEGIRPW 174
              +R  + SS       +    ++A     +  +   ++  PK       +K+  ++P+
Sbjct: 118 VLVTRGKSISSIKNLHKLIAPSIRYAYDSNRIMKDFSRAIIIPKDKEDTKLKKSSDVKPF 177

Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK------ 228
           T E+  +F           L F   L +GLR  +        +  +   I   K      
Sbjct: 178 TLEEQLKFIEAIKGHELEML-FLTALDTGLRQGELFALTWNDIDLDTRHISVNKSFKSIR 236

Query: 229 ---TGT---------------IITVELP--DGFMKLLAMTPI----------GKETFFIN 258
              TG                ++ + +   D   +   +                  F N
Sbjct: 237 NISTGKYENIIQTPKTSNSIRLVPIPVHLIDKLKQHKLLQKTLKLKLANLYEDNTLIFCN 296

Query: 259 NDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVD 317
              + +++      FK       + ++  H +R   AT   + G  A  +    G   + 
Sbjct: 297 KFGKYLDSGNVLKKFKKILNDNNLNDRKFHDLRHTYATRLFELGEEAKTVQTLLGHSNIS 356

Query: 318 QA-ETYTKGADRIRLGIKNSRRISSV 342
              +TYT   D   L  K   ++ ++
Sbjct: 357 ITLDTYTHVLDS--LKEKAVSKLDTL 380


>gi|330900242|gb|EGH31661.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. japonica str. M301072PT]
          Length = 299

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 45/261 (17%), Positives = 90/261 (34%), Gaps = 30/261 (11%)

Query: 89  VNSRISFESYFDQIIR---KSGDFDYRKITTKHI---RSGVESRKHTPSSAIQFLTSMRV 142
             +R ++++           +G  ++R +   H+   R+ +E R  + ++  + L ++  
Sbjct: 39  PRTRRAYQADLRDFCSFVGLAGAEEFRAVNRAHVLAWRAQLERRALSGATIRRKLAALAS 98

Query: 143 LFKWAVRQE-YVAINPCLSVERPKRKT-EGIRPWTKED-----MQQFKSFWSEGSQPRLA 195
           LF + +        NP   V RPK +T EG  P   +D     +    +   +G + R  
Sbjct: 99  LFDYLLNNNALAGGNPVHGVARPKVETNEGKTPALGDDQAKRLLDAPDAESLQGVRDRAI 158

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ---KTGTIITVELPDGFMKLLAMTPIGK 252
              LLY GLR  +        LQ        +   K G I  + L     + + +  +  
Sbjct: 159 LAVLLYQGLRREELSLLQTGDLQERRGVKHLRIHGKGGKIRYLPLHPVAAERIYVYLVRD 218

Query: 253 E-------TFFINNDKQ----KMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISA 298
                     F +   +     +            A+ A +       HG+R  +AT + 
Sbjct: 219 GDRALTPGALFRSQRGKTSGTGITGKGVYGVVTKWASAAQIRVDGLGVHGLRATAATNAL 278

Query: 299 DAGATAHELMATYGWKTVDQA 319
           +  A   ++    G   +   
Sbjct: 279 EHDADIAKVQIWLGHANISTT 299


>gi|255021753|ref|ZP_05293790.1| Site-specific recombinase XerD [Acidithiobacillus caldus ATCC
           51756]
 gi|254968809|gb|EET26334.1| Site-specific recombinase XerD [Acidithiobacillus caldus ATCC
           51756]
          Length = 307

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 39/270 (14%), Positives = 80/270 (29%), Gaps = 34/270 (12%)

Query: 83  HWGSLAVNSRISF---ESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
            +   A N++  +      F              +T  H++  ++ R  + SS + ++ +
Sbjct: 22  EYPDHAENTQKQYITVARTFLHWCANR-SLHPDHVTAAHLQRFLDDRGLSRSSQLAYMQA 80

Query: 140 MRVLFKWAVRQEYVAINPC----------LSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
           +  L+     +     NP                P+           E+  +F +     
Sbjct: 81  LSALYGILQDRGLADDNPTSSWSVQYRKKKGKSGPRMAKRLPTVLDSEEETRFLATIPLD 140

Query: 190 S-------QPRLAFEFLLYSGLRCSDSCRAGVQHLQ---NNIFSIKTQKTGTIITVELPD 239
                   + R+    LL++GLR S++    +  ++   +        K      V +  
Sbjct: 141 DLLPFSVYRKRVFLHLLLFTGLRVSEALSLSLAQVRLEADPPVVRVIGKGNKEREVPISP 200

Query: 240 GFMKLLAMTPIGKETF-------FINNDKQKMNATQFSIWFKAKATKAGVNKSAHG---V 289
               +L      ++ F       F          T            AG+ K A+G   +
Sbjct: 201 TLQVVLEGYLERRQRFVRNGDWLFSTAVGAPFTRTWAYTTVSEVIRGAGIQKPAYGPHVL 260

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQA 319
           R   AT    AG     + A  G + +   
Sbjct: 261 RHTFATRQLRAGIAPAIVKAWLGHEDLAIT 290


>gi|153852802|ref|ZP_01994239.1| hypothetical protein DORLON_00221 [Dorea longicatena DSM 13814]
 gi|149754444|gb|EDM64375.1| hypothetical protein DORLON_00221 [Dorea longicatena DSM 13814]
          Length = 583

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 50/341 (14%), Positives = 109/341 (31%), Gaps = 38/341 (11%)

Query: 10  FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
           F+  + TR    I+Y  +    + R+                       + +  P+ +  
Sbjct: 233 FIETDETRWDATIWYLERFRIAKERINQSDSIE------------KISFQEVLQPKNRL- 279

Query: 70  TLKWLISEYRK-SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128
               L+ EY K     G LA+++           +++  + +  K     I   +++ ++
Sbjct: 280 ----LLQEYMKYEIGIGELALSTVYERFRTIRNFLQEISELEVTKCDASLIDVYLKNLQN 335

Query: 129 TPSSAIQF---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED---MQQF 182
               A  F   ++ ++   K+   + Y+   P  +    +++       + E+   M+  
Sbjct: 336 GAMGAKTFNTNVSGIQFFMKFLEVKGYIKKVPFYASYYLEKQIPVHHDRSVEEDVYMEII 395

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELP 238
           ++        R+ F  L   GLR S+ C            +    +   K      V +P
Sbjct: 396 QNLSQFPEHLRMMFLHLWCVGLRISEVCTLKGDAYYIQNGDCWMKVYQVKMKNYKRVPIP 455

Query: 239 DGFMKLLAMT----PIGKETFFINND-KQKMNATQFSIWFKAKATKAGVNK-----SAHG 288
               +L+ +     P  KE +   N      + + F    K   ++ G+        +H 
Sbjct: 456 VTLYRLMQVYLKKHPTEKEAYIFRNRKGGAFSKSTFMGQMKKYCSQIGIQNGEYIFKSHD 515

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            R   AT   + G +   +    G    +    Y     R 
Sbjct: 516 YRHTVATNFYEHGVSIQSIRDYLGHTFEEMTMQYIDYMPRK 556


>gi|294678724|ref|YP_003579339.1| tyrosine recombinase XerC [Rhodobacter capsulatus SB 1003]
 gi|294477544|gb|ADE86932.1| tyrosine recombinase XerC [Rhodobacter capsulatus SB 1003]
          Length = 307

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 41/247 (16%), Positives = 79/247 (31%), Gaps = 20/247 (8%)

Query: 104 RKSGDFDYRKITTKHIRSGVES---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
              G      +    +R+ +     R  +  S  + L++++   +W   +E       LS
Sbjct: 51  ESLGLAQLAGLGQSDMRAWMAHERNRGLSGRSLARALSAVKNFIRWLAAREGFDATHVLS 110

Query: 161 VERPKRKTEGIRPWTKED----MQQFKSFWSEG---SQPRLAFEFLLYSGLRCSDSCRAG 213
            + PK + +  RP + E     ++Q +    E    ++       +   GLR S++    
Sbjct: 111 AKAPKYQRKLPRPLSVEAAAEVLEQVEVQAQEPWIAARDSAVMTLMYGCGLRVSEALALK 170

Query: 214 VQHLQNNIFSIKTQKTGTIITVELPDGFMKL------LAMTPIGK-ETFFINNDKQKMNA 266
                         K      V +     K       L   P+ + E  F       +N 
Sbjct: 171 GSDAPLPEVLRIRGKGDKERLVPVLPAARKAVADYLRLCPFPMSRYEPLFRGARGGPLNP 230

Query: 267 TQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              +   +      G+  +A  H +R   AT     G     +    G  ++   + YT 
Sbjct: 231 RLVAKSMERARLGLGLPATATPHALRHSFATHLLAEGGDLRAIQELLGHASLATTQVYT- 289

Query: 325 GADRIRL 331
             D+ RL
Sbjct: 290 AVDQARL 296


>gi|283797946|ref|ZP_06347099.1| site-specific recombinase, phage integrase family [Clostridium sp.
           M62/1]
 gi|291074412|gb|EFE11776.1| site-specific recombinase, phage integrase family [Clostridium sp.
           M62/1]
 gi|295091862|emb|CBK77969.1| Site-specific recombinase XerD [Clostridium cf. saccharolyticum
           K10]
          Length = 350

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 42/281 (14%), Positives = 90/281 (32%), Gaps = 32/281 (11%)

Query: 93  ISFESYFDQIIRKSGDFDYRK---ITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVR 149
                +   ++ + G  D  +       H     E   +T     + ++S++  + +  R
Sbjct: 69  RDKRDFTVDVLDQIGVMDLEEYLEFLKCHSTENKEDLVNTERGLTRKMSSLKSFYNYFFR 128

Query: 150 QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS---------------QPRL 194
            E +  NP   V+ PK   + I     +++ +      +G                +   
Sbjct: 129 NERIKTNPAALVKLPKLHEKEIIRLEIDEVARLLDLVEDGQELTERQKAYHEKTKIRDLA 188

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM------ 247
               LL +G+R S+     +  +  N+  I+  +K G  + +   D   + L        
Sbjct: 189 LMTLLLGTGIRVSECIGLNLNDVDFNVDGIRIHRKGGKEVIIYFGDEVEQALRAYLEERK 248

Query: 248 ----TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAG 301
                P  +E  F++  K++MN        K  +         + H +R    T      
Sbjct: 249 KMIPAPGNEEALFLSMQKKRMNVRSVENLVKKYSRIVTPLKKITPHKLRSTYGTNLYRET 308

Query: 302 ATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISS 341
              + +    G   V+   + Y    D  R   +N  ++  
Sbjct: 309 GDIYLVADVLGHADVNTTKKHYAALEDERRRSARNKVKLRE 349


>gi|160934965|ref|ZP_02082351.1| hypothetical protein CLOLEP_03840 [Clostridium leptum DSM 753]
 gi|156866418|gb|EDO59790.1| hypothetical protein CLOLEP_03840 [Clostridium leptum DSM 753]
          Length = 414

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 44/283 (15%), Positives = 90/283 (31%), Gaps = 45/283 (15%)

Query: 86  SLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHT--PSSAIQFLTSM 140
            +   +  S+ES   Q I           + +  +HI+     +  T  P+S I +   +
Sbjct: 95  RVKPTTFGSYESMVKQTIEPYFRNKPITLKDLEARHIQQFYSEKLKTVKPNSVIHYHAVI 154

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200
               K+A++ + VA N  + V+RPK+           ++Q        G++  L      
Sbjct: 155 HQALKYAMKTDLVAQNVAMKVDRPKKNDFQPVFLDAAELQHLFDVVK-GTKLELPVLVAA 213

Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQKT---------------------GTIITVELPD 239
           + GLR  +        +     ++  ++T                      ++ T+ L  
Sbjct: 214 FYGLRRGEVLGLKWDAIDFERGTLTIKRTVTSVNVGGKTQVIEQESAKTKSSMRTLPLVG 273

Query: 240 GFMKLLAMTPIGKET----------------FFINNDKQKMNATQFSIWFKAKATKAGVN 283
            F +  A     +E                  F++   ++M     +  F A   + G+ 
Sbjct: 274 RFREYFAEVKAAQELNKQVCGNCYNYEYDGFVFVDELGERMKTDYLTSQFPAFIQRHGMK 333

Query: 284 K-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTK 324
           K   H +R   A++    G    ++    G          Y  
Sbjct: 334 KMRFHDLRHSCASLLLANGVPLKQIQDWLGHSDFSTTANIYAH 376


>gi|154500010|ref|ZP_02038048.1| hypothetical protein BACCAP_03668 [Bacteroides capillosus ATCC
           29799]
 gi|150271608|gb|EDM98865.1| hypothetical protein BACCAP_03668 [Bacteroides capillosus ATCC
           29799]
          Length = 503

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 46/329 (13%), Positives = 98/329 (29%), Gaps = 47/329 (14%)

Query: 42  TFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAH-------WGSLAVNSRIS 94
            F  A         P         + P      I E+ +          + S A + + S
Sbjct: 148 AFQYAVELTWLKENPVAHINPCADEAPILFTDFILEWLEMMKNSVELTTYSSYANSIKGS 207

Query: 95  FESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA 154
              YF   +    D +      +        +  T ++ I    ++R   ++A +   + 
Sbjct: 208 IVPYFKDKMLTLQDLEKHPKHIQDYYQFELGKGLTANTVIHRHANIRKCLQYAFQIGLIK 267

Query: 155 INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGV 214
            NP   VERP++       + +++++        G    L      + GLR S+      
Sbjct: 268 SNPADRVERPRKDKYLATIYNQQELEILFKTVK-GDPIELGVILAAFYGLRRSEVVGLKW 326

Query: 215 Q------------------HLQNNIFSIKTQKTGTI---ITVELPDGFMKLLAMTPIGK- 252
                              ++     +++  +T T     T+ L   F +LL      + 
Sbjct: 327 DAIDFEKKTISIKHTVTQVNVDGKNITVQKDRTKTKSSYRTLPLVPPFEELLRRLKQEQL 386

Query: 253 ---------------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATI 296
                          +  ++N   + +     +  F+      G+ K   H +R   A++
Sbjct: 387 VNQKVCGAAYCKKYLDYIYVNAMGELVKPNFITQHFEIVLKNHGLKKIRFHDLRHSCASL 446

Query: 297 SADAGATAHELMATYGWKTVDQAE-TYTK 324
               G +  ++    G   +      YT 
Sbjct: 447 LYANGVSLRDIQEWLGHSDIGTTSNIYTH 475


>gi|301066065|ref|YP_003788088.1| site-specific recombinase, prophage lsa1 integrase [Lactobacillus
           casei str. Zhang]
 gi|300438472|gb|ADK18238.1| Site-specific recombinase, prophage lsa1 integrase [Lactobacillus
           casei str. Zhang]
          Length = 382

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 56/314 (17%), Positives = 111/314 (35%), Gaps = 46/314 (14%)

Query: 69  TTLKWLISE----YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
            T   L ++    Y ++   GS A  ++  F ++    I   G      I T  I+S V 
Sbjct: 67  HTFSDLYNQWWPIYVQTVE-GSTAYKTKQLFNNHL---IPMFGSKTLTAIKTGSIQSAVS 122

Query: 125 SRKHTPSSAIQ-FLTSMRVLFKWAVRQEYVAINPCLSVERPK--RKTEGIRPWTKEDMQQ 181
             + T + A +     ++ +  +AV+ +Y+  NP   VE P+  R  +    W  + + +
Sbjct: 123 QWRETTTKAYKERFIYLKKILSFAVKMQYIEKNPADGVELPRGVRSGKSPVYWDNKQVAR 182

Query: 182 FKSFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQ----------------NNIFS 223
           F +     + P     F  ++ +G+R  + C   V  +                 N   S
Sbjct: 183 FLTCIDPNNDPEKYTMFLLMVSTGIRREELCALNVSDVNFKTSTLSINKAYATGLNGKES 242

Query: 224 IKTQK-TGTIITVELPD----GFMKLLA-------MTPIGKETFFIN--NDKQKMNATQF 269
           IK  K T  + T+ L         K +A       ++       F +  + ++++   + 
Sbjct: 243 IKGTKSTAGMRTIPLTPKVTIQLKKWIALLDASKIISIRDDRPLFPSPQHFEKRLGINRP 302

Query: 270 SIWFKAKATK--AGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           + W K            + HG+RK   T    +G     +    G  T D       G +
Sbjct: 303 NKWLKDIIEANHLTPRITLHGLRKSFVTNMIRSGVDVSTVQRLAGHSTPDVTLRIYAGMN 362

Query: 328 RIRLGIKNSRRISS 341
           +     +   +++ 
Sbjct: 363 QSD-AREGIDKLAE 375


>gi|148652162|ref|YP_001279255.1| phage integrase family protein [Psychrobacter sp. PRwf-1]
 gi|148571246|gb|ABQ93305.1| tyrosine recombinase XerC subunit [Psychrobacter sp. PRwf-1]
          Length = 341

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 42/287 (14%), Positives = 91/287 (31%), Gaps = 31/287 (10%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQI--IRKSGDFDYRKITTKHIRSGVESRKHTPSS 132
           + ++        ++ ++  ++ +   Q+         ++ +   + +   +  R  T + 
Sbjct: 37  VEQWLSELSVRQMSAHTIDAYYAGLYQLACFLAQAQLNWTRCDKRQLAKYIAKRLDTDAL 96

Query: 133 AI----QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           AI    Q L+++R  + W + Q    INP    +  +           + + Q       
Sbjct: 97  AISSVQQELSAIRHFYSWLIEQGQARINPTTGYQLKRAPRPLPSIADGDLIAQLLEQPMP 156

Query: 189 GS--------QPRLAFEFLLYSGLRCSDSCRAGVQHLQ----NNIFSIKTQKTGTIIT-V 235
            +        + +  FE L  SGLR  +     V  L+         ++    G     V
Sbjct: 157 DTPEQARLWIRDKAMFELLYSSGLRVGELVGLNVADLRIDAKGERGEVRVTGKGNKTRLV 216

Query: 236 ELPDGFMKLLAM--------TPIGKETFFIN-NDKQKMNATQFSIWFKAKATKAGVNKS- 285
            +    +K +             G    FI+     ++         K  A +AG+ ++ 
Sbjct: 217 PVGRQALKAINRYLPHRNLWEERGDRALFISEKHGTRLTTRAVQQRLKVAAARAGIAQNM 276

Query: 286 -AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
             H +R   A+           +    G   +   + YT   D  RL
Sbjct: 277 YPHLLRHCFASHMLSGSGDLRAVQEMLGHSDISTTQIYTH-VDFDRL 322


>gi|330891180|gb|EGH23841.1| site-specific recombinase, phage integrase family protein
           [Pseudomonas syringae pv. mori str. 301020]
          Length = 357

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 50/289 (17%), Positives = 105/289 (36%), Gaps = 26/289 (8%)

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119
           YI     +  TL+  +  Y  S    +    ++    S   ++I   G +    ++ + I
Sbjct: 50  YIQRSGSERMTLEAALKRYL-SDITPTKKPTTQRGETSKAKKLIEHLGKYSLAALSAEII 108

Query: 120 RSGVESR-------KHTPSSAIQF-LTSMRVLFKWAVRQEY---VAINPCLSVERPKRKT 168
               + R         T ++ ++  L  +  LF  A+ QE+   +  NP L++ +P    
Sbjct: 109 AGYRDKRLNEKGRVGTTSNNTVRLELALLSHLFTVAI-QEWGLGLTFNPVLNIRKPSPGE 167

Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSI 224
              R  + ++ ++  +  +  S P L       L +G+R ++          L+  I  +
Sbjct: 168 GRNRRLSADEERRLMAAVNRHSNPMLGWIVGIALETGMRSAEISTLRKPMVDLERRIVKL 227

Query: 225 KTQKTGTIITVELPDGFMKLLAMT------PIGKETFFINNDKQ--KMNATQFSIWFKAK 276
              K     TV L     +L          P   +  F     +  K     F+  + + 
Sbjct: 228 VDTKNDGQRTVPLSKRATELFKAAMANPARPGDCQLVFFGEPGKDKKRRPYAFTKIWGSL 287

Query: 277 ATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             + G+ +   H +R  + +   + G +  E+ A  G K++   + YT 
Sbjct: 288 VKELGLSDFRFHDLRHEAVSRLVEGGLSDQEVSAISGHKSMQMLKRYTH 336


>gi|308448796|ref|XP_003087755.1| hypothetical protein CRE_30625 [Caenorhabditis remanei]
 gi|308253057|gb|EFO97009.1| hypothetical protein CRE_30625 [Caenorhabditis remanei]
          Length = 543

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 48/288 (16%), Positives = 96/288 (33%), Gaps = 28/288 (9%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGV----ESR 126
            L+S + K     + +V++  ++       I    D   + +++    +R  V    E  
Sbjct: 241 QLLSMWIKDRKIQNQSVHTLDAYFRDVSNFIDFCYDKQIELKQVEAADLREYVAYRVEKD 300

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
           + + SS  + LTS+R   KWA +  Y+ IN     +  ++          E + Q     
Sbjct: 301 QLSTSSLQRHLTSIRQFMKWAKQGGYLEINAADDFQIKRQARPLPGMIDIETVNQIMDQP 360

Query: 187 SEG--------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV--- 235
                       + +   E L  SGLR ++     ++ +      ++    G    +   
Sbjct: 361 EPEKPIEKQLWLRDKAILELLYSSGLRLAEVQSLAIRDIDFTRHLLRITGKGNKTRIVPF 420

Query: 236 --ELPDGFMKLLAM------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKS 285
             +  D  ++ L +          +   FI      ++  Q     K +A +AGV  +  
Sbjct: 421 GSKARDSLIEWLKIYRIWQGEFSPESLVFITQRGTSISPRQIENRVKYQALRAGVNVDLH 480

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
            H +R   A+           +    G   +   + YT   D   L  
Sbjct: 481 PHLLRHCFASHMLSNSGDLRAVQEMLGHSNLTTTQIYTH-VDFDHLAQ 527


>gi|167465667|ref|ZP_02330756.1| DNA integration/recombination/invertion protein [Paenibacillus
           larvae subsp. larvae BRL-230010]
          Length = 412

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 50/334 (14%), Positives = 108/334 (32%), Gaps = 58/334 (17%)

Query: 65  RKKPTTLKWLIS-----EYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKH 118
           + +  TLK  I      +Y       +L+  +  ++  + +  I+   G      I T H
Sbjct: 70  KPEKMTLKQFIENEWEPKYASKP--KNLSPLTYKTYMHHIENHIMPTFGHKFLGDIKTLH 127

Query: 119 IRSGVESRKH------------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
           I + ++                +P +       ++ +   A   + +  NP + V++PK 
Sbjct: 128 IVTFIDDLGKPGSRKDNKGDTLSPGTIQFIYRVLKNILTRATEWQLIKSNPTVGVKKPKV 187

Query: 167 -KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFS 223
            +T+      KE  +  K+ + E  + RL     +  G R  +        +   N   S
Sbjct: 188 EQTQLDFYDEKEAREVIKALYQEPRRWRLLILGAMLGGCRRGELVGLEWSDVDFENKTIS 247

Query: 224 IK---------------TQKTGTIITVELPDGFMKLLAMTPI----------------GK 252
           I+                +   +I T+++P  +M  L                      +
Sbjct: 248 IRKSISLTVDSRAIEKEPKSKSSIRTIDMPQWYMVELKEYEREWKKEKLSVGDKWIGGDR 307

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATY 311
              F     +    +  S W+     +  + +   H +R  SAT+  +AGA+   +    
Sbjct: 308 RYVFHAGLGKPYFYSYPSEWWSKFIKRHDLKRVRFHDLRHSSATLLIEAGASMKAIQQRL 367

Query: 312 GWKT-VDQAETYTKGADRIRLGIKNSRRISSVVD 344
           G       A+ Y       ++  + + +      
Sbjct: 368 GHSKHQTTADVYAHVT--KKVSRETAEKFDKFAP 399


>gi|149916304|ref|ZP_01904824.1| site-specific recombinase, phage integrase family protein
           [Roseobacter sp. AzwK-3b]
 gi|149809758|gb|EDM69610.1| site-specific recombinase, phage integrase family protein
           [Roseobacter sp. AzwK-3b]
          Length = 363

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 49/283 (17%), Positives = 96/283 (33%), Gaps = 33/283 (11%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIR----KSGDFDYRKITTKHIRSGVESRKH-- 128
           + ++ +  H+       R +  +           + G      I    +R   +  +   
Sbjct: 71  LDQFYRD-HFLPWYQTYRRNSTNIVQLYRSTYHIRYGHRHLHTICQDDLRKLTKEMQDLG 129

Query: 129 -TPSSAIQFLTSMRVLFKWAVRQEY------VAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
             P S  + +  +R + + A    Y      +   P L  + P+ +    R  ++E+ Q+
Sbjct: 130 YAPGSVNRTVVILRGMLRRADDWGYCKIHSSLQKPPNLLPDHPRHE----RFLSREEAQR 185

Query: 182 FKSFWSE--GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVEL 237
            ++       +   LA  FLLY+G R S+   A   H+      + I   K G   TV L
Sbjct: 186 LQAVLQRRGATPVNLAILFLLYTGARRSEVLNADWAHVDFARQEWRIPISKNGRPRTVIL 245

Query: 238 PDGFMKLLAMT-----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA 286
            D  + +L                   T F N   ++     +  W + +A     +   
Sbjct: 246 SDRAVDILEQARAYQQRHFVKQARSVSTVFANPQTRQPYHNIWETWKRVRAEADLTDVRL 305

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           H +R   A+   +AG + +E+    G   +   + Y   A   
Sbjct: 306 HDLRHSYASTLINAGVSIYEVQKLLGHTNITTTQRYAHLASER 348


>gi|89070669|ref|ZP_01157942.1| site-specific recombinase, phage integrase family protein
           [Oceanicola granulosus HTCC2516]
 gi|89043749|gb|EAR49952.1| site-specific recombinase, phage integrase family protein
           [Oceanicola granulosus HTCC2516]
          Length = 371

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 52/294 (17%), Positives = 98/294 (33%), Gaps = 20/294 (6%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE-SRKH 128
           TL  +I +Y +      +        E+   +     G     +I    +    +     
Sbjct: 71  TLGDVIPDYIE--KHAKVHNRDWKRKEALLAKFTALHG-RRIDEIKRADVVKACDVIHSS 127

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF-KSFWS 187
            P SA + L  ++ L  W V +  +  +P   ++   ++    R  T +++     +  +
Sbjct: 128 APVSANRALAHLKHLMGWCVERGMIDASPIAGMKPLSKERSRERVLTDDELGALWAASDA 187

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIITVELPDGFMK 243
           EG       + L+ SG R ++        L              K G   TV L D  + 
Sbjct: 188 EGYPFGDCMKLLILSGQRRAEVAEMQWSELDLERRLWTLPSQRAKNGRQHTVPLTDAMLD 247

Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS----AHGVRKFSATISAD 299
           LL   P    + F+     +   + F    K +  +     +     H +R+  +T  A 
Sbjct: 248 LLRGVPRFLGSDFVFTTTGRSAVSGFG-RLKDRLDRTLPEGTQPWIIHDLRRTMSTNMAM 306

Query: 300 AGATAHELMATYGWKTV---DQAETYT--KGADRIRLGIKN-SRRISSVVDSDD 347
            G       A    KT      A  Y     AD  R  +   SR+++  +++ D
Sbjct: 307 MGVPQPVTEALLNHKTGVVSGVAAIYNVYSYADEKRAALDAWSRKLTQQIEALD 360


>gi|160887392|ref|ZP_02068395.1| hypothetical protein BACOVA_05411 [Bacteroides ovatus ATCC 8483]
 gi|156107803|gb|EDO09548.1| hypothetical protein BACOVA_05411 [Bacteroides ovatus ATCC 8483]
          Length = 420

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 37/228 (16%), Positives = 80/228 (35%), Gaps = 10/228 (4%)

Query: 110 DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
           D +    +    G +    + ++A  + + ++   K A   EY+ ++    V+      +
Sbjct: 182 DIKMFLLRAPMGGNKKGTISQNTASTYFSILKAGLKQAFIDEYLTVDISAKVKGITNIEK 241

Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSI- 224
                T  ++Q       +    + AF F + +GLR SD      + +    +    ++ 
Sbjct: 242 PRVALTMNEVQMLVDTPCKDDVLKRAFLFSILTGLRHSDIQTLKWKQIQQTSKGTWQAVV 301

Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284
             QKT       +    ++L  + P   E            A+  S   K     +G+ K
Sbjct: 302 IQQKTKRPDYKPVIQQALQLCGIRPDDDEALVFEGLTD---ASWISRPLKVWIEASGIKK 358

Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
             + H  R   A++  + G   + + +  G   V   + YT   +  +
Sbjct: 359 HITFHCGRHSYASLLLENGVDIYTIKSLMGHTNVKTTQIYTHIVNEQK 406


>gi|34540643|ref|NP_905122.1| mobilizable transposon, int protein [Porphyromonas gingivalis W83]
 gi|34396957|gb|AAQ66021.1| mobilizable transposon, int protein [Porphyromonas gingivalis W83]
          Length = 367

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 48/256 (18%), Positives = 93/256 (36%), Gaps = 27/256 (10%)

Query: 92  RISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----------SRKHTPSSAIQFLTSMR 141
           RI ++ +++ +    G   +  IT +  +   E            K + +SA  + ++ R
Sbjct: 112 RIVYQHFYNYV---QGHCTFGDITIELCQGFREYLLNAKQLKRKGKVSTNSASGYYSTFR 168

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201
            L K A R +++  N    +++ + K       T ++++       E    + A  F   
Sbjct: 169 GLLKIAYRDKWLRENINDFLDKIEAKEVKKEYLTLDEVKILAQTPCEHDVLKRASLFSCL 228

Query: 202 SGLRCSDSCRAGVQHL-----QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFF 256
           +GLR SD      +       Q     I+TQKT T  T+ +     + L   P   + F 
Sbjct: 229 TGLRISDILNLRWEDFTLAPDQGYCIRIRTQKTSTEATLPISYEAYE-LCGEPSSGKVF- 286

Query: 257 INNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWK 314
                + +  +  +   K    +AG+ K  + H  R   A I    G   + +      K
Sbjct: 287 -----KGLQRSMINYPLKKWIKQAGIMKHITFHCFRHSYAVIQISLGTDIYTVSKMLTHK 341

Query: 315 TVDQAETYTKGADRIR 330
            V   + Y    +  +
Sbjct: 342 NVSTTQIYADLVNSKK 357


>gi|254555639|ref|YP_003062056.1| prophage Lp4 protein 1, integrase [Lactobacillus plantarum JDM1]
 gi|254044566|gb|ACT61359.1| prophage Lp4 protein 1, integrase [Lactobacillus plantarum JDM1]
          Length = 385

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 47/300 (15%), Positives = 91/300 (30%), Gaps = 42/300 (14%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKH 128
           T   +   + K+     +  ++    E  F   I    G      IT +  +      + 
Sbjct: 72  TFDEVYEVWLKTYK-LGVKESTLNRVEGIFKHHITPSFGGMRINTITWQKCQEEALKWRE 130

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK------RKTEGIRPWTKEDMQQF 182
           +     +      ++F+ A +   +  NP   V+ PK      +       WT E +  F
Sbjct: 131 SVKQFNKLAQYAALVFRTAQKMGVITTNPMKLVDVPKIAVDYSKDKAADNFWTAEQLATF 190

Query: 183 KSFWSE----GSQPR----LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-- 232
            +         +QPR      F  L  +G+R  ++       +      +   KT +   
Sbjct: 191 LAVVDATDGHRTQPRYDRSALFYLLATTGMRKGEALALTWSDIDLKNGLVTINKTISRSI 250

Query: 233 ----------------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS 270
                                  T++    + K L + P  K+  F N   Q M+    +
Sbjct: 251 DNHQIISTPKTRNAYRTLSLNSSTIDRLKKYRKSLVVIPRAKDLIFTNQKGQIMSVMTPN 310

Query: 271 IWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADR 328
            W +A   +  +   + HG+R   A+I          L    G   +      Y   + +
Sbjct: 311 HWLEALIGETDLPTITVHGLRHTFASIQVANNINVKALQMQMGHSDIKITLNIYAHLSQQ 370


>gi|197285858|ref|YP_002151730.1| phage integrase [Proteus mirabilis HI4320]
 gi|194683345|emb|CAR44052.1| phage integrase [Proteus mirabilis HI4320]
          Length = 327

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 51/319 (15%), Positives = 117/319 (36%), Gaps = 29/319 (9%)

Query: 12  TKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
            +   R+GK     R+   ++      HE+     Y+  +   + K         +P  L
Sbjct: 15  IRPTGRNGK---RIRRKFNKK------HEAIAFERYV--MANHSKKEWGTKLKDIRP--L 61

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH---IRSGVESRKH 128
             L+  +     +G  + N + ++ +   ++ +     +  ++T+K     ++   ++  
Sbjct: 62  DELVELWWNM--FGKHSENGKSNYNNAM-RVCKGMHSSNVSQVTSKSISFYQNERFAKGI 118

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAI-NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            PS+  + L ++R +F   ++       NP +  ++ K     +   T ++ ++  +   
Sbjct: 119 KPSTINRELYAIRGIFSQLIKMGLYEAENPFIEAKKLKINASEMSYLTLDETRKLLANL- 177

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
           EG    +A  F L +G R  ++ +   +H+  N       KT     V +       +  
Sbjct: 178 EGDYYNIAV-FCLSTGARWGEAMKLKREHIIENKVRFTYTKTRKARIVPISKELCDQICK 236

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHEL 307
              GK+    ++    ++   F    K+        ++ H +R   AT     G +   L
Sbjct: 237 ---GKKDLLFSS----VSYQVFRKILKSVKPSLPDGQATHVLRHTFATHFMINGGSIITL 289

Query: 308 MATYGWKTVDQAETYTKGA 326
               G  ++ Q  TY   A
Sbjct: 290 QRILGHASLKQTMTYAHFA 308


>gi|34763511|ref|ZP_00144452.1| DNA integration/recombination/invertion protein [Fusobacterium
           nucleatum subsp. vincentii ATCC 49256]
 gi|27886817|gb|EAA23949.1| DNA integration/recombination/invertion protein [Fusobacterium
           nucleatum subsp. vincentii ATCC 49256]
          Length = 328

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 41/295 (13%), Positives = 97/295 (32%), Gaps = 44/295 (14%)

Query: 88  AVNSRISFESYFDQIIR--KSGDFDY---------RKITTKHIRSGV----ESRKHTPSS 132
           +  +   +  +    +     G+ D+         + I  + + + +    E R+   +S
Sbjct: 33  SEKTIKDYMFHLKDFLHFVYDGENDFSISEVIPLMQDIEKEDVEAYIVHLFEDRQLKKTS 92

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW--TKEDMQQFKSFWSEGS 190
               L++++ L+K    +     NP   ++  K           + +D+++    +   S
Sbjct: 93  VNTILSALKSLYKELESKGL--KNPVKYIKLFKVNRNIENILKVSIDDIRKIIGLYKIDS 150

Query: 191 QPR----LAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDGFM 242
           + +         L Y+G+R  +      +H         F +   K+G  +   +    +
Sbjct: 151 EKKYRNITILYTLFYTGMRSKELLTLQFKHYLKREDEYFFKLIETKSGKDVYKPIHKSLV 210

Query: 243 K-------------LLAMTPIGKETFFINN--DKQKMNATQFSIWFKAKATKAGVNKSAH 287
           K              L +  + ++  F  +  D   ++    +   +      G + S H
Sbjct: 211 KKLEEYKKYLISMYSLDLKDLDEKYIFSTSILDNSPLSYRSLNAIIQDMGKLIGKDISPH 270

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
            +R   AT  + +GA   E+    G       E Y     R  L  K   ++  +
Sbjct: 271 NIRHAIATELSLSGADILEIRDFLGHSDTKVTEVYINA--RSILEKKVLEKLPEI 323


>gi|291444654|ref|ZP_06584044.1| site-specific recombinase [Streptomyces roseosporus NRRL 15998]
 gi|291444673|ref|ZP_06584063.1| site-specific recombinase [Streptomyces roseosporus NRRL 15998]
 gi|291347601|gb|EFE74505.1| site-specific recombinase [Streptomyces roseosporus NRRL 15998]
 gi|291347620|gb|EFE74524.1| site-specific recombinase [Streptomyces roseosporus NRRL 15998]
          Length = 314

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 45/249 (18%), Positives = 86/249 (34%), Gaps = 26/249 (10%)

Query: 109 FDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
            D   I  +H+ + + +  R+ + S+A     S++ +F W V +E +  +P  +++ P  
Sbjct: 56  ADLDDIHREHVEAYITATMRRTSASNAHNHFRSLKTMFNWLVDEEELDRSPMRTMKPPTL 115

Query: 167 KTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSC--RAGVQHLQNN 220
               +      D+ +        +    +       LL +G+R S+    R G   L   
Sbjct: 116 PEVEVPVIPDADLSKLFKACKGTTYADRRDTALLMLLLDTGVRLSELTDRRVGDLDLDLK 175

Query: 221 IFSIKTQKTGTIITVELPDGFMKLLAM----------TPIGKETFFI----NNDKQKMNA 266
           +  +   K G    V   +     L             P+  +  ++     N  Q++  
Sbjct: 176 VLHV-LGKGGKTRPVPFGNTCATALDRYLRAAAKHKGKPLDDDEMWLWWGHRNKGQRLTI 234

Query: 267 TQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
                  K +  +AG+     H  R   A      G    +LM   GWK+      Y   
Sbjct: 235 WGVGTMLKRRCAQAGIGELHPHQFRHTFAHQWKVNGGNEDDLMRITGWKSRQMLSRYAAS 294

Query: 326 A--DRIRLG 332
           A  +R R+ 
Sbjct: 295 AGTERARMA 303


>gi|324006765|gb|EGB75984.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 57-2]
          Length = 326

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 50/305 (16%), Positives = 99/305 (32%), Gaps = 21/305 (6%)

Query: 26  RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG 85
           R G   R R     E+     Y+ A              R     L      Y ++   G
Sbjct: 20  RNGKRIRRRFEKKQEAVLFERYVLANADKKEWLGASVDRRTLSELLDTWWLLYGQTQENG 79

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI---RSGVESRKHTPSSAIQFLTSMRV 142
            +        + + ++ IR  GD    ++  + I   RS       + ++  + +  +  
Sbjct: 80  EIE-------KRHLNKTIRALGDPAVNRLNKRMIAQHRSQRLEDGISAATINRDIYRLSG 132

Query: 143 LFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201
           +F   ++ +E+   NPC  +E  K     +    K ++ +     + G   R+A    L 
Sbjct: 133 MFSTLIKLEEFRKENPCKGLEPLKEAPPAMTYLAKSEISKLLDTLT-GDDRRVAL-LCLS 190

Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK 261
           +G R  +      + + +   +    K G   TV + +   K +  +  G    F     
Sbjct: 191 TGARWGEGSTLRGEQVNHGRVTFLKTKNGKKRTVPISEELEKEIKTSDTG--PLF----- 243

Query: 262 QKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
            K++   F    +         ++ H +R   A+     G     L    G  ++ Q   
Sbjct: 244 -KVDYENFCERLRQVKPDLPRGQATHVLRHTFASWFMMNGGNIIALQQILGHASIQQTMV 302

Query: 322 YTKGA 326
           Y   A
Sbjct: 303 YAHLA 307


>gi|295087166|emb|CBK68689.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A]
          Length = 420

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 37/228 (16%), Positives = 80/228 (35%), Gaps = 10/228 (4%)

Query: 110 DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
           D +    +    G +    + ++A  + + ++   K A   EY+ ++    V+      +
Sbjct: 182 DIKMFLLRAPMGGNKKGTISQNTASTYFSILKAGLKQAFIDEYLTVDISAKVKGITNIEK 241

Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIK 225
                T  ++Q       +    + AF F + +GLR SD      + +    +    ++ 
Sbjct: 242 PRVALTMNEVQMLVDTPCKDDVLKRAFLFSILTGLRHSDIQSLKWKQIQQTNKGTWQAVV 301

Query: 226 -TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284
             QKT       +    ++L  + P   E            A+  S   K     +G+ K
Sbjct: 302 VQQKTKRPDYKPVIQQALQLCGIRPNDDEALVFEGLTD---ASWISRPLKVWIEASGIKK 358

Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
             + H  R   A++  + G   + + +  G   V   + YT   +  +
Sbjct: 359 HITFHCGRHSYASLLLENGVDIYTIKSLMGHTNVKTTQIYTHLVNEQK 406


>gi|255016170|ref|ZP_05288296.1| integrase [Bacteroides sp. 2_1_7]
          Length = 420

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 37/228 (16%), Positives = 80/228 (35%), Gaps = 10/228 (4%)

Query: 110 DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
           D +    +    G +    + ++A  + + ++   K A   EY+ ++    V+      +
Sbjct: 182 DIKMFLLRAPMGGNKKGTISQNTASTYFSILKAGLKQAFIDEYLTVDISAKVKGITNIEK 241

Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSI- 224
                T  ++Q       +    + AF F + +GLR SD      + +    +    ++ 
Sbjct: 242 PRVALTMNEVQMLVDTPCKDDVLKRAFLFSILTGLRHSDIQTLRWKQIQQTSKGTWQAVV 301

Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284
             QKT       +    ++L  + P   E            A+  S   K     +G+ K
Sbjct: 302 IQQKTKRPDYKPVIQQALQLCGIRPDDDEALVFEGLTD---ASWISRPLKVWIEASGIKK 358

Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
             + H  R   A++  + G   + + +  G   V   + YT   +  +
Sbjct: 359 HITFHCGRHSYASLLLENGVDIYTIKSLMGHTNVKTTQIYTHIVNEQK 406


>gi|119869100|ref|YP_939052.1| phage integrase family protein [Mycobacterium sp. KMS]
 gi|119695189|gb|ABL92262.1| phage integrase family protein [Mycobacterium sp. KMS]
          Length = 407

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 52/285 (18%), Positives = 98/285 (34%), Gaps = 37/285 (12%)

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRSG 122
           P+    T   +   + ++    + A  +   + S  D + + +  D   R ++ + ++  
Sbjct: 79  PKLSGVTFGVIAERWIQTKA--TRAPKTVAGYRSLLDVVVLPRWRDVPLRDVSFEDLQQW 136

Query: 123 -----------VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
                       E R  +PS  IQ    +  + ++AV+ +++  NP   +E P++     
Sbjct: 137 VSGLSVNGSTRFEGRGLSPSRVIQAHQVVSQVLRYAVKAKHLPANPADGIELPRKPEVEQ 196

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ------------- 218
           R  T E +Q+         + R     L Y GLR  ++    V  +              
Sbjct: 197 RYLTHEQLQRLAV---ASGRFRTFVLVLGYCGLRFGEAAALRVGDVNLSSRRIRIRRSVT 253

Query: 219 ---NNIFSIKTQKTGTIITVELPDGFMKLLAM---TPIGKETFFINNDKQKMNATQFSIW 272
                       K  +  TV +P     L+       +  E  F +     +   +    
Sbjct: 254 AVTGQGLVEGPTKNHSARTVPVPKFLAPLIETEVGGRVDDELLFPSRRGGYLTEGEVRWV 313

Query: 273 FKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTV 316
           F A A   GV   + H +R   A+++  AGA    L    G KT 
Sbjct: 314 FDAAAVAVGVTGLTPHELRHTCASLAIAAGANVKVLQTLLGHKTA 358


>gi|322517694|ref|ZP_08070557.1| phage integrase family site-specific recombinase [Streptococcus
           vestibularis ATCC 49124]
 gi|322123682|gb|EFX95274.1| phage integrase family site-specific recombinase [Streptococcus
           vestibularis ATCC 49124]
          Length = 384

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 61/366 (16%), Positives = 116/366 (31%), Gaps = 57/366 (15%)

Query: 11  VTKERTRHGKIIYYF-------RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63
           + K +T+ G I+YY          G  +R              Y + L            
Sbjct: 3   IHKYKTKKG-ILYYVSFYIGLDAYGKKKRHLKRGFKTKKEAKLYEARLEAGVVAPTVSTD 61

Query: 64  PRKKPTTLKWL----ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119
                 T K L     + Y  +    + +  ++  +  +   I    GD    +I+    
Sbjct: 62  KPNPKVTYKELYQEWFNAYVGTVEETT-SSQTKNIYRIHILPI---FGDKFIDQISPLDC 117

Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK-RKTEGIRPWTKED 178
           ++ +     T  +  Q  +    +F +A+   Y+  NP  +V  PK +KT     W+ E+
Sbjct: 118 QNFITQNSQTFKNIKQIKSYTSKIFDFAINMNYIDRNPMKNVIMPKIKKTRSDNFWSLEE 177

Query: 179 MQQFKSFWS--EGSQPRLAFEFLLYSGLRCSDSCRAGVQH----------------LQNN 220
           +  F       E  +    F  L +SGLR  +                        +   
Sbjct: 178 LHHFLDIVKETEPFKHFALFRLLAFSGLRKGELYALKWADINFDSNLLNIDKSLGRIDGK 237

Query: 221 IFSIKTQKTGTIITVELPDGFMKLLA-----------MTPIGK--------ETFFINNDK 261
                T+   ++ T+ L D  + ++              P+ K         ++  +NDK
Sbjct: 238 AIEKSTKNESSVRTIYLDDETIDIIKQWRNFYLKEQSQLPLTKLNISNEYMFSYISSNDK 297

Query: 262 -QKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
            + ++A   +        K  +   S HG R   AT+ ++ G          G  +    
Sbjct: 298 IEPLHADYINNVLNRIIKKHKLKPISPHGFRHTHATLMSEIGIDPSNTSKRLGHASSQMT 357

Query: 320 -ETYTK 324
            + YT 
Sbjct: 358 LDVYTH 363


>gi|126733327|ref|ZP_01749074.1| tyrosine recombinase [Roseobacter sp. CCS2]
 gi|126716193|gb|EBA13057.1| tyrosine recombinase [Roseobacter sp. CCS2]
          Length = 304

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 37/263 (14%), Positives = 83/263 (31%), Gaps = 27/263 (10%)

Query: 88  AVNSRISFESYFDQII--------RKSGDFDYRKITTKHIRSGVES---RKHTPSSAIQF 136
           A N+  ++++     +           G     ++T + +R+ +     R     S  + 
Sbjct: 24  AENTLKAYQTDVMGFLAFMTQYNGESQGLAPIARVTVRDMRAWMAHERGRGIGARSLARS 83

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT-------KEDMQQFKSFWSEG 189
           L++++  ++W   +E       LS   PK + +  RP          + ++   +     
Sbjct: 84  LSAVKSFYRWLAEREGFEPTAVLSTRAPKFQRKLPRPLEVNAASAMIDTVELQANEPWVA 143

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM-- 247
           ++       L   GLR S++       +          K G    V +     + +A   
Sbjct: 144 ARDAAVVTLLYGCGLRISEALGLTSVDVPLPEVLRIVGKGGKERIVPVIAEAREAVATYV 203

Query: 248 -----TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADA 300
                     +  F       ++        +    + G+  +A  H +R   AT    A
Sbjct: 204 RLCPYPVAQDQPIFRAVRGGILSPRAIQKVMEQARLQLGLPATATPHAMRHSFATHLLAA 263

Query: 301 GATAHELMATYGWKTVDQAETYT 323
           G     +    G  ++   + YT
Sbjct: 264 GGDLRAIQELLGHASLSTTQAYT 286


>gi|258539251|ref|YP_003173750.1| phage-related integrase [Lactobacillus rhamnosus Lc 705]
 gi|257150927|emb|CAR89899.1| Phage-related integrase [Lactobacillus rhamnosus Lc 705]
          Length = 382

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 57/313 (18%), Positives = 111/313 (35%), Gaps = 46/313 (14%)

Query: 70  TLKWLISE----YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
           T   L ++    Y ++   GS A  ++  F ++    I   G      I T  I+S V  
Sbjct: 68  TFSDLYNQWWPIYVQTVE-GSTAYKTKQLFHNHL---IPMFGSKTLTAIKTGSIQSAVSQ 123

Query: 126 RKHTPSSAIQ-FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP--WTKEDMQQF 182
            + T + A +     ++ +  +AV+ +Y+  NP   VE P+    G  P  W  + + +F
Sbjct: 124 WRETTTKAYKERFIYLKKILSFAVKMQYIEKNPADGVELPRGVGSGKSPVYWDNKQVARF 183

Query: 183 KSFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQ----------------NNIFSI 224
            +     + P     F  ++ +G+R  + C   V  +                 N   SI
Sbjct: 184 LTCIDPNNDPEKYTMFLLMVSTGIRREELCALNVSDVNFKTSTLSINKAYATGLNGKESI 243

Query: 225 KTQK-TGTIITVELPD----GFMKLLA-------MTPIGKETFFIN--NDKQKMNATQFS 270
           K  K T  + T+ L         K +A       ++       F +  + ++++   + +
Sbjct: 244 KGTKSTAGMRTIPLTPKVTIQLKKWIALLDASKIISIRDDRPLFPSPQHFEKRLGINRPN 303

Query: 271 IWFKAKATK--AGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
            W K            + HG+RK   T    +G     +    G  T D       G ++
Sbjct: 304 KWLKDIIEANHLSPRITLHGLRKSFVTNMIRSGVDVSTVQRLAGHSTPDVTLRIYAGMNQ 363

Query: 329 IRLGIKNSRRISS 341
                +   +++ 
Sbjct: 364 SD-AREGIDKLAE 375


>gi|239905577|ref|YP_002952316.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
 gi|239795441|dbj|BAH74430.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
          Length = 372

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 45/272 (16%), Positives = 88/272 (32%), Gaps = 31/272 (11%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTK--------HIRS 121
           L  L S+Y               + E     + I   GD     +T +        H + 
Sbjct: 86  LSELGSKYLAHMKASGRTEKHIRNIEHLVHHVFIPVLGDKPVDSLTYQEDMIPFILHFQG 145

Query: 122 GVESRK--HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW----T 175
                    +  +  ++   +  +F + +   + ++NP  + ++PK +     PW    T
Sbjct: 146 VSSRTGKVRSQYTVNKYCDYLSFIFNFGIDNGFTSVNPLKNWKKPKVQ-----PWDMKLT 200

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD--SCRAGVQHLQNNIFSIK--TQKTGT 231
            +D ++           + A E     G R  +        + +     +++    KT T
Sbjct: 201 LDDAKKIMVNAEP--HLKWAMEVCFNLGTRPGESELLSLKWEDIDFKASTVRIYASKTKT 258

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINND-KQKMNATQFSIWFKAKATKAGVNK--SAHG 288
             TV +   F+K L       +T ++     +K+        FK    +AG+      + 
Sbjct: 259 YRTVPINPEFLKRLEKEQAESQTGYVIEYMGRKLT--TIRKAFKNACKRAGITYQTRMYD 316

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAE 320
           +R   AT     GA    +    G  TV    
Sbjct: 317 LRHLFATTLLRKGADLAAVSKMMGHSTVKMTA 348


>gi|189463345|ref|ZP_03012130.1| hypothetical protein BACCOP_04062 [Bacteroides coprocola DSM 17136]
 gi|189429964|gb|EDU98948.1| hypothetical protein BACCOP_04062 [Bacteroides coprocola DSM 17136]
          Length = 418

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 36/226 (15%), Positives = 73/226 (32%), Gaps = 11/226 (4%)

Query: 111 YRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170
           +R+      + G +    + ++A  + +  +   K A    Y+ I+    V+  + +   
Sbjct: 183 FRQFIMNAPQGGTKRGTISQNTASTYFSIFKAGLKQAFIDGYLTIDIAAKVKGIQERESR 242

Query: 171 IRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----NNIFSIKT 226
               T E++ +      +    R A    L +G+R  D  +     ++        +   
Sbjct: 243 REYLTIEELNRLAQTPCDPLLKRAALFSAL-TGIRHCDIQKLKWSEVEQFNGGYRLNFTQ 301

Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284
           QKT  +  + + +    L      G+   F                 K     AG+ K  
Sbjct: 302 QKTKGVEYMPISEQAYNLCGEQKEGELLVFAGLPDPSWINRP----VKKWVEAAGITKHI 357

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
           + H  R   AT+    G   + +    G   V   + Y K  D  +
Sbjct: 358 TFHCFRHSYATLQLAGGTDIYTVSKMLGHTNVRTTQVYAKVVDEKK 403


>gi|239930698|ref|ZP_04687651.1| integrase [Streptomyces ghanaensis ATCC 14672]
 gi|291439062|ref|ZP_06578452.1| integrase [Streptomyces ghanaensis ATCC 14672]
 gi|166078058|gb|ABY81078.1| Int1 [Streptomyces ghanaensis]
 gi|291341957|gb|EFE68913.1| integrase [Streptomyces ghanaensis ATCC 14672]
          Length = 376

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 55/343 (16%), Positives = 103/343 (30%), Gaps = 36/343 (10%)

Query: 19  GKIIYYFRKGHGRRIR-LPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISE 77
           G+    +R     ++R     + +            S   R   + P           + 
Sbjct: 20  GRWQVRYRDPETGQLRPAEKTYATKTDAQVALTHIESDIVRGQWSDPDAGAVNFGEYATA 79

Query: 78  YRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSA 133
           + +      LA  +R   ES     I+   G      +TT  +R              + 
Sbjct: 80  WLRD---RKLADRTRERNESVMRLHILPTFGAGSVADVTTARVRGWRGKLLAAGVGEPTV 136

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
           ++    +R L   AV  E +  NPC      +         T  ++  F    S   + R
Sbjct: 137 VKAYQLLRALMNTAVDDELIRRNPCRIKGADRYDVPERPVLTVAEV--FAVADSIAPRYR 194

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII-----------------TVE 236
           L      ++ LR  +      + +     ++  ++    +                 +V 
Sbjct: 195 LLVLLAAFTTLRFGELAALRRRDIDQEGLTVTVRRAQAELQDGRLFDKAPKSAAGVRSVS 254

Query: 237 LPDGFMKLLA------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHG 288
            P   +  +A        P      F+     ++  + F   +      AGV      H 
Sbjct: 255 FPAELLDAVAHHLEHFAAPGRDGHVFVGPQGGQLRRSNFRDDWVKAREAAGVTAELHFHD 314

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330
           +R    T+++ AGA+  ELM   G  +   A  Y    +DR R
Sbjct: 315 LRHTGNTLASTAGASTRELMTRMGHSSSRAALIYQHMTSDRDR 357


>gi|325473780|gb|EGC76968.1| tyrosine recombinase xerC [Treponema denticola F0402]
          Length = 305

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 49/284 (17%), Positives = 98/284 (34%), Gaps = 36/284 (12%)

Query: 76  SEYRK-SAHWGSLAVNSRISFES---YFDQIIRKSGDFDYRKITTKHIRSGVESRKHT-- 129
             Y   SA        +  S+++    F++ +++  D +  ++    IR  +        
Sbjct: 6   ESYLTYSAGVRQFTKATIDSYKNDLIIFEEWLKEL-DLNVFELKASDIRIFIAELADKKI 64

Query: 130 -PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
            P+S  + ++++R  +K+A+R     INP  SV   K   +       +  Q+F    S 
Sbjct: 65  APASINRMMSTLRGFYKYALRFNLTKINPISSVRNLKLAQKLPVFMFPKQAQEFCRLPSN 124

Query: 189 G-----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPDGFM 242
                 ++    F  L  +G R S+     ++ L   + ++I   K      V   +   
Sbjct: 125 AGILWETRDAALFASLYSTGCRVSELAGLDIKDLDKTLSYAIVFGKGKKERKVFFAEFAK 184

Query: 243 KLLAMTPIGKETFF------INNDKQKMNATQFSIWFKAKATKA-GV------------- 282
           + L +    +          +  D +        I  KA+A  + G+             
Sbjct: 185 EYLKIYLQERTDLVEKFKGQVQKDGKGKIRDALFINQKAQALTSRGIRYIINRYVELSPE 244

Query: 283 --NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             + S H  R   A+     GA    +    G ++V   + YT 
Sbjct: 245 LKHLSPHAFRHSFASTLITRGADIRVVQELLGHESVSTTQRYTH 288


>gi|240172534|ref|ZP_04751193.1| phage integrase family protein [Mycobacterium kansasii ATCC 12478]
          Length = 368

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 52/309 (16%), Positives = 104/309 (33%), Gaps = 43/309 (13%)

Query: 45  PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI-I 103
            AY+  LTG   +  Y++ PRK   T   +  ++  +   G     +   + S  D + +
Sbjct: 22  QAYLDGLTGDIQRGAYVD-PRKSAETFGSVAEQWFATK--GHRKPKTVAGYRSILDALAL 78

Query: 104 RKSGDFDYRKITTKHIRSGVE------SRKHTPSSAIQFLTS---MRVLFKWAVRQEYVA 154
            K  +   ++I  +   + +       S + T  SA +   +   +  + K+A R   ++
Sbjct: 79  PKWAEVPLKQIDYQAYSTWLGGLAVDGSLRGTALSASRITQAHQLVGAVLKYAQRTGKIS 138

Query: 155 INPCLSVER----PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL-YSGLRCSDS 209
            N    ++R    P       R     ++ Q        +        +L Y GLR  ++
Sbjct: 139 RNVAAEIKRSEDLPVPVERERRYLNHAELLQLAK----ATLRFETLTLVLGYCGLRFGEA 194

Query: 210 CRAGVQHLQNNIFSIK--------------TQKTGTIITVELP----DGFMKLLAMTPIG 251
                +H+ +    ++              T KT     V +P    D     L   P  
Sbjct: 195 AALRRKHVGDRELLVRSSATYVTGRGIVESTTKTNRARHVPIPGPVWDRLQPELPSDP-- 252

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMAT 310
               F ++    +   ++   F       G+     H +R  +A+++  AGA    +   
Sbjct: 253 NALVFPSHRGGHLPIEEYRRAFDKGCNAVGIAGLVPHALRHTTASLAISAGANVKVVQRL 312

Query: 311 YGWKTVDQA 319
            G  T    
Sbjct: 313 LGHATAAMT 321


>gi|254513132|ref|ZP_05125198.1| phage integrase family protein [Rhodobacteraceae bacterium KLH11]
 gi|221533131|gb|EEE36126.1| phage integrase family protein [Rhodobacteraceae bacterium KLH11]
          Length = 236

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 33/170 (19%), Positives = 59/170 (34%), Gaps = 9/170 (5%)

Query: 166 RKTEGIRPWTKEDMQQFKSFWS-EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--F 222
           +  +     + E++ +  +     G + R A      +GLR S+ C      + ++    
Sbjct: 40  QPRKLPAVLSAEEVSELLAVAPGPGLKYRAALSISYGAGLRASEVCNLTAGDIDSDRVLI 99

Query: 223 SIKTQKTGTIITVELPDGFMKLLA---MTPIGKETFFINNDK-QKMNATQFSIWFKAKAT 278
            +   K      V L    + LL         +   F    K   ++  Q +  F +   
Sbjct: 100 HVVQGKGRKDRKVMLSPDLLDLLRDYWCEARPEGWLFPGKPKINPISPRQLNRAFTSAKR 159

Query: 279 KAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            AG+NK  + H +R   AT   +AG     +    G   +     YTK A
Sbjct: 160 MAGINKPATLHTLRHSFATHLLEAGTDVRVIQVLLGHAKLTTTAQYTKVA 209


>gi|188590222|ref|YP_001919587.1| phage integrase [Clostridium botulinum E3 str. Alaska E43]
 gi|188500503|gb|ACD53639.1| phage integrase [Clostridium botulinum E3 str. Alaska E43]
          Length = 389

 Score = 97.0 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 60/403 (14%), Positives = 135/403 (33%), Gaps = 81/403 (20%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR- 65
           +P  + ++R  +G   +++R  H     L  P +          L   T K       + 
Sbjct: 1   MPKSIYRKRVINGTEYFFYRLRHD---NLRKPKD----------LYARTEKELKAKIKKL 47

Query: 66  ---------KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR--KSGDFDYRKI 114
                        +     SE+     +  +  +++I +E+ +   I+  +  D   +++
Sbjct: 48  NYELDHNIQSNKNSFGVFFSEWLFDIKFMEIKPSTKIKYETVYRNHIKNSEISDIKIKEL 107

Query: 115 TTKHIRSGVES--RKHTPSSAIQFLTSMRVLF-KWAVRQEYVAIN-------PCLSVERP 164
           T+K I+    +  +K   ++ ++ +  +     K+A   +++  +       P    E+ 
Sbjct: 108 TSKDIQIYYNNLIKKGKSTTLVKTIHKLIAPCIKYAYNNDFIIKDFTGSLIIP-KETEKD 166

Query: 165 KRKTEGIR-PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223
           K   E    P+T E+ ++F      G++    F   L SGLR  +        +      
Sbjct: 167 KLNKESSVIPFTLEEQKEFIKAIK-GNKFEALFITALNSGLREGELLALTWNDINLKEKY 225

Query: 224 I---------------------------KTQKTGTIITVE-----LPDGFMKL------- 244
           I                           KT+K    +++      +   + K        
Sbjct: 226 INVNKNLGVVTEVSKDGRGVSKLEVQTPKTRKGKRQVSIPNFLITVLKEYKKQQSKNRLK 285

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGAT 303
           LA         F +     +N  + +  +K    ++ +  +  H +R   AT   + G  
Sbjct: 286 LANKYTNNNLIFCDEYGNYLNRDKVTYQYKKLLKESKIKTRKFHDLRHTYATRLFELGEQ 345

Query: 304 AHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVVDS 345
           A  +    G   V     TYT   D ++   K   ++ ++ ++
Sbjct: 346 ARTVQELLGHSDVSVTLNTYTHVLDDMK--EKAVSKLDNLFNA 386


>gi|167762266|ref|ZP_02434393.1| hypothetical protein BACSTE_00619 [Bacteroides stercoris ATCC
           43183]
 gi|167699909|gb|EDS16488.1| hypothetical protein BACSTE_00619 [Bacteroides stercoris ATCC
           43183]
          Length = 373

 Score = 97.0 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 89/231 (38%), Gaps = 13/231 (5%)

Query: 110 DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
            +R+      +   ++RK   +SA  + ++ R       R   +  NP   +ER +    
Sbjct: 139 RFREYLLTAPQGLHKNRKLHINSAANYWSTFRASIHITYRDRKIKENPNGFLERIETIPT 198

Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIK 225
                +++++ +  S        + AF F   + LR SD  +   + +     + +  + 
Sbjct: 199 DKEHLSQDEVIRLASTPCSAPALKRAFLFSCLTALRKSDIKKLTWEEIQPYGSDGVMYVT 258

Query: 226 T--QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
           T  QKT  I+   + +  ++L+  +P  +   F  + K  M       W K     AG+ 
Sbjct: 259 TRMQKTKDIVHNPISEEALELIGYSPDKRGKVFP-DFKDSMTQAPLKNWLKD----AGIT 313

Query: 284 K--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           K  S H  R   A +  DAG +   +    G K V   E Y K +D  +  
Sbjct: 314 KHISYHCSRHSFACLQLDAGTSIAVVQRYLGHKNVATTEVYAKISDAQKRA 364


>gi|323143711|ref|ZP_08078381.1| site-specific recombinase, phage integrase family [Succinatimonas
           hippei YIT 12066]
 gi|322416514|gb|EFY07178.1| site-specific recombinase, phage integrase family [Succinatimonas
           hippei YIT 12066]
          Length = 355

 Score = 97.0 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 48/287 (16%), Positives = 96/287 (33%), Gaps = 32/287 (11%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH 128
           +   L+  Y +      L +N+ ++       +I+    D     I+   IR        
Sbjct: 57  SFSSLVDAYFEDMA-HRLKLNTIMTKRQIVTTKILPYFKDKAVCDISAVDIRKWQAVMIS 115

Query: 129 TPSSAIQFLTS---MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-PWTKEDMQQFKS 184
             +S     T    +  +F +AVR   + +NPC        K    +  WT E+ + F  
Sbjct: 116 KGNSETYLRTINNQLSTIFNYAVRFYDLKVNPCTKAGSIGSKNAVSKDFWTVEEFKTFAD 175

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK-----TGTII------ 233
              +     + F  L ++G+R  +     V+       ++   K      G  +      
Sbjct: 176 GLYDNWDAYIGFNLLFWTGMRIGELLALNVKDFDLKAKTVSISKSYQRIKGKDVITKPKT 235

Query: 234 -----TVELPDGFMKLLAMTPIGKETFFINNDKQ--KMNATQFSIWFKAKATKAGVNK-S 285
                 V LP+  ++ L         + +N+  +        F+   +    + GV K  
Sbjct: 236 LNSTRVVSLPNFLIEDLEDYFS--HIYEVNDRYRLFPYTKHYFNYEMQQVCKRTGVKKIR 293

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQ-----AETYTKGAD 327
            H +R   A++  + G  A  +    G K ++      +  Y +  D
Sbjct: 294 LHDLRHSHASLLVNMGLGAKVIADRLGHKRIETTLNTYSHLYKRTQD 340


>gi|315505932|ref|YP_004084819.1| integrase family protein [Micromonospora sp. L5]
 gi|315412551|gb|ADU10668.1| integrase family protein [Micromonospora sp. L5]
          Length = 353

 Score = 97.0 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 54/313 (17%), Positives = 110/313 (35%), Gaps = 44/313 (14%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFD---QIIRKSGD-----FDYRKITTKHIRS 121
           T+  LI E+  +      + ++  ++        +++  +GD          ++ K +R+
Sbjct: 32  TVGALIEEFLTARATRKPSPHTLAAYRRDLTTVAELVAAAGDASPLRLPVSTLSPKVMRA 91

Query: 122 GVESRKHTPSSAI--QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW----T 175
                    ++A   +  ++    F + V +  V  NP  +V RP+      +P     T
Sbjct: 92  AFARFAGPRAAASVHRAWSTWNSFFTFLVAEGVVPGNPMPAVGRPRTPLPRPKPLRGEDT 151

Query: 176 KEDMQQF------KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT--- 226
            E++         +       +        L +GLR S+     V  +       +    
Sbjct: 152 PEELLAAVARAEGRQRDPWPERDLAVLALALCAGLRLSELLALRVSSVAGRDGERRVDVA 211

Query: 227 QKTGTIITVELPDGFMKLLA------------MTPIGKETFFINNDKQKMNATQFSIWFK 274
            K G   TV + DG  ++LA             +      F ++   + +         +
Sbjct: 212 GKGGRPRTVPIEDGVDRVLAGYLDSRRLRFGSRSVRPDSPFLVDRQGEALRRGGLQYLVE 271

Query: 275 AKATKAGVN------KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY---TKG 325
           +   +AG+          H +R   AT  A+ GA+A E+M   G  ++  ++TY   T G
Sbjct: 272 SCYRRAGIGDRVPRGARLHALRHTFATRLAEDGASAAEIMRLLGHASLASSQTYIEVTAG 331

Query: 326 ADRIRLGIKNSRR 338
             R  +    + R
Sbjct: 332 QQRAAVAANRTNR 344


>gi|150017497|ref|YP_001309751.1| phage integrase family protein [Clostridium beijerinckii NCIMB
           8052]
 gi|149903962|gb|ABR34795.1| phage integrase family protein [Clostridium beijerinckii NCIMB
           8052]
          Length = 325

 Score = 97.0 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 43/323 (13%), Positives = 103/323 (31%), Gaps = 51/323 (15%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFE-SYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128
           +LK  ++ + +       +  + I +  +    +I   G+     +   H+   +   + 
Sbjct: 2   SLKTYLNMWLEDYVKEERSERTYIIYRDTMLKHVIPCIGNIKLSDLKVVHVEKYLRELRK 61

Query: 129 TPSSAIQFLT----SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK- 183
             ++    +     +++     AV+ + +  NPC  VE PK+        T E+      
Sbjct: 62  IKNNNGSTIQLNFRNLKTALNKAVKLQLLNDNPCRFVEMPKKNNFKGNYLTAEEFNLIYN 121

Query: 184 ---SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK---TGTIIT--- 234
              +    GS  R+  +  + +G R  + C    +++  +  +I   K    G       
Sbjct: 122 SLNAATYLGSSFRVLLDLAVETGCRRGEMCGTEWRNIDFDNKTITFDKALIKGEHGWKIG 181

Query: 235 ----------VELPDGFMKLLAMTPIGK---------------------ETFFINNDKQK 263
                     + L D  +  L    I +                     +   I  + + 
Sbjct: 182 RLKTETSYRALPLSDDLINQLKKLRIKQLENKLTFGSEYHLNSFDGIEYDLICIQRNGKF 241

Query: 264 MNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE- 320
           M         K    +  ++K    H +R  SAT+  + G     +    G  ++     
Sbjct: 242 MVPNDVRDRLKYLLKRNKIDKNIRWHDLRHTSATLLLENGVAMKTIQKRLGHASMSTTSD 301

Query: 321 TYTKGADRIRLGIKNSRRISSVV 343
            Y+   +  ++  + +  +S  +
Sbjct: 302 IYSHVTE--KMDREATNILSRTI 322


>gi|148285154|ref|YP_001249244.1| site-specific tyrosine recombinase XerC [Orientia tsutsugamushi
           str. Boryong]
 gi|146740593|emb|CAM81243.1| tyrosine recombinase XerC [Orientia tsutsugamushi str. Boryong]
          Length = 312

 Score = 97.0 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 45/283 (15%), Positives = 98/283 (34%), Gaps = 30/283 (10%)

Query: 71  LKWLISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGD-FDYRKITTKHIRSGVESRKH 128
           L+ +I+E+     ++ + ++N+  S+ +   Q +    D  +  ++ T H+ S       
Sbjct: 7   LEKIITEWLNHLKNYKNYSINTCNSYNNDLQQFLNFIVDYCNLSELKTSHLCSVDIRLMR 66

Query: 129 TPSSAIQFLT-----------SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
           +  S    L            S+R  +K+  +Q  +      +V  PK      +    E
Sbjct: 67  SWLSQRYNLQYNSSSNSRALSSVRNFYKYLFKQHNLVNKIISAVRSPKLAKRLPKALDIE 126

Query: 178 -------DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
                  ++    +    G++ +     L   GLR S++       L++    IK  K  
Sbjct: 127 DTVACTTEINNIANDKWIGARDKALLFLLYGQGLRISEALSVTKVSLKSESLIIK-GKGN 185

Query: 231 TIITVELPD-------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
            I  +   D        ++ L+  +       F+    +K+    F         +  + 
Sbjct: 186 KIRLIPWLDITKQLVSDYVNLVPYSLTENSPLFVGKRGKKLQPAVFGRHLIKLRRQLNLP 245

Query: 284 --KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              + H  R   A+   + GA    +    G +++   + YTK
Sbjct: 246 ESLTPHTFRHCFASHLLNNGADLRSIQELLGHQSLSSTQIYTK 288


>gi|262068300|ref|ZP_06027912.1| integrase/recombinase, phage integrase family [Fusobacterium
           periodonticum ATCC 33693]
 gi|291377988|gb|EFE85506.1| integrase/recombinase, phage integrase family [Fusobacterium
           periodonticum ATCC 33693]
          Length = 329

 Score = 97.0 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 37/277 (13%), Positives = 94/277 (33%), Gaps = 15/277 (5%)

Query: 59  EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH 118
           +   + R +   +++L   +  + H    +  S   +++  + + +K  D   + ITT  
Sbjct: 40  KKEGADRDEKQNIEYL-EAFLSAKHVEGCSRKSLKYYKATIENLFKKI-DKSIKHITTND 97

Query: 119 IRSGVESRKHTPSS----AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
           +R  +++ +   ++               F W   ++Y+  +P   + + K  T     +
Sbjct: 98  LREYLDNYQKEGNASKITIDNIRRIFSSFFAWLEEEDYILKSPVRRIHKVKTGTVVKETY 157

Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTII 233
           + E M+  +       +     + L  +G+R  +  +  ++ +       +   K     
Sbjct: 158 SDEAMEIMRDNCKS-LRDLAIIDILASTGMRVGELVKLNIEDIDFEGRECVVFGKGDKER 216

Query: 234 TVELPDG----FMKLLAMTPIGKETFFIN--NDKQKMNATQFSIWFKAKATKAGVNK-SA 286
            V             L          F++     +++  +   I  +    K  + K   
Sbjct: 217 KVYFDARTKIHLHNYLKTRDDDNSALFVSLLKPHKRLQISGVEIMLRQLGRKLNITKVHP 276

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           H  R+  AT + D G    ++    G + +D    Y 
Sbjct: 277 HKFRRTLATKAIDKGMPIEQVQQLLGHQKIDTTLQYA 313


>gi|229916806|ref|YP_002885452.1| integrase family protein [Exiguobacterium sp. AT1b]
 gi|229468235|gb|ACQ70007.1| integrase family protein [Exiguobacterium sp. AT1b]
          Length = 287

 Score = 97.0 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 39/226 (17%), Positives = 77/226 (34%), Gaps = 11/226 (4%)

Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
             + + S    P +   +L+++R L+ WA+ ++ V  NP   +     +       T  D
Sbjct: 58  YITALRSEGCQPVTINNYLSALRGLYDWAITEQLVTHNPFHHLRVKVTERPPSDVPTPSD 117

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN--IFSIKTQKTGTIITVE 236
           + +           R      L++G+R ++  +  +  +  N  +  I   KTG    V 
Sbjct: 118 LHRVIDAIDVPLY-RTFLTLQLHTGMRINEVRQLTLDAIDLNARLLYIHESKTGKPRKVP 176

Query: 237 LPDGFMKLL------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATK-AGVNKSAHGV 289
           L D    ++          I     F +     +  T  +   K  A    G + ++H +
Sbjct: 177 LNDVTHAMMTTYLEEERRCIDSPYVFPSARGDLICKTTINRHLKRAAEDVLGTSVTSHTL 236

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIK 334
           R    +   D G     L    G         Y +   D +R  ++
Sbjct: 237 RHAFTSHLYDMGVKETTLSELLGHSEPKTTRRYIRVREDHLRDAVE 282


>gi|298375507|ref|ZP_06985464.1| integrase [Bacteroides sp. 3_1_19]
 gi|298268007|gb|EFI09663.1| integrase [Bacteroides sp. 3_1_19]
          Length = 330

 Score = 97.0 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 35/282 (12%), Positives = 95/282 (33%), Gaps = 21/282 (7%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129
           L++ +  +      +  +   + +  ++++          ITT  IR+ +    E  + +
Sbjct: 55  LLNSFISAKKIEGCSEKTLTYYRNTIERLLVTL-SLAICHITTTDIRTYLSDYQEEHQSS 113

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
             +           F W   ++Y+A +P   + + K  +      + E ++Q +   +  
Sbjct: 114 KVTIDNMRRIFSSFFAWLEDEDYIAKSPVRRIHKVKTDSLVKEVLSDEQLEQLRDSCTT- 172

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT----QKTGTIITVELPDG----F 241
            +     +FL  +G+R  +  +   + +    F  +      K      V          
Sbjct: 173 KRDLAIIDFLSSTGIRVGELVKLSREDID---FHERQCVVFGKGNKERVVYFNARTKLHL 229

Query: 242 MKLLAMTPIGKETFF--INNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISA 298
            + L          F  +N+   ++  +   +  +       + K   H  R+  AT++ 
Sbjct: 230 QQYLNERTDSNPALFVSLNSPHSRLTISGVEVRIRKMGQALSMPKVHPHKFRRTLATMAI 289

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
           D G    ++    G   +D    Y    ++  + + + + + 
Sbjct: 290 DKGMPIEQVQRLLGHVRIDTTLHYA-IVNQNNVKLAHKKYLG 330


>gi|154504412|ref|ZP_02041150.1| hypothetical protein RUMGNA_01916 [Ruminococcus gnavus ATCC 29149]
 gi|153795341|gb|EDN77761.1| hypothetical protein RUMGNA_01916 [Ruminococcus gnavus ATCC 29149]
          Length = 237

 Score = 97.0 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 39/233 (16%), Positives = 80/233 (34%), Gaps = 34/233 (14%)

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG------- 189
           ++++R  + +  + + +  NP L V+ PK   + I     +++     F   G       
Sbjct: 1   MSALRSFYGYYFKHQIIEKNPTLFVDMPKLHEKAIVRLDTDEVASLLDFVEHGGDELTGQ 60

Query: 190 ---------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELP 238
                    ++       LL +G+R S+     +Q +   NN  ++  +K G  + +   
Sbjct: 61  KKVYYEKTKNRDLAIITLLLGTGIRVSECVGLDIQDVDFKNNGITV-VRKGGNEMVIYFG 119

Query: 239 DGFMKLLA-----------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--S 285
           +     L              P  +   F++  +++M         K  A +   NK  +
Sbjct: 120 EEVEHALKQYLYTTREAATPLPGHENALFLSTQRRRMGVQAVENMVKKYARQVTPNKKIT 179

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK-GADRIRLGIKNS 336
            H +R    T         + +    G K V+   + Y     DR R+  K  
Sbjct: 180 PHKLRSTYGTTLYKETGDIYLVADVLGHKDVNTTKKHYAAIDEDRRRMAAKAV 232


>gi|153805908|ref|ZP_01958576.1| hypothetical protein BACCAC_00148 [Bacteroides caccae ATCC 43185]
 gi|149130585|gb|EDM21791.1| hypothetical protein BACCAC_00148 [Bacteroides caccae ATCC 43185]
          Length = 328

 Score = 97.0 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 40/262 (15%), Positives = 87/262 (33%), Gaps = 14/262 (5%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----KHT 129
           L+  +  +      + NS   + S  +  + K G  +   ITT  +R  + +       +
Sbjct: 53  LVENFISAKKVEGCSPNSIAYYRSTINNALIKLG-KEVIHITTDDLRHYLNTYQSESGAS 111

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
             +       +   F W   + Y+  +P   + + K        +T E ++  +   S  
Sbjct: 112 KVTVDNIRRILSSFFSWLEEENYIVKSPVRRIHKVKVGKTVKETYTDESLELMRDHCS-N 170

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDG----FMKL 244
            +     + L  +G+R  +  +     +  +N   I T K      V           K 
Sbjct: 171 PRDLALIDLLASTGMRVGELVKLNRSDIDYHNRECIVTGKGDKQRKVYFDARTKIHLQKY 230

Query: 245 LAMTPIGKETFFIN--NDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG 301
           +       E  F++      ++  +   I  +       + K   H  R+  AT++ D G
Sbjct: 231 INSRTDNNEALFVSLLAPYDRLQISGVEIRLRQMGKDLNIPKVHPHKFRRTLATMAIDKG 290

Query: 302 ATAHELMATYGWKTVDQAETYT 323
               ++    G +++D    Y 
Sbjct: 291 MPIEQVQHLLGHQSLDTTLQYA 312


>gi|72537678|ref|YP_293708.1| prophage integrase [Burkholderia phage phi52237]
 gi|72398368|gb|AAZ72603.1| prophage integrase [Burkholderia phage phi52237]
          Length = 441

 Score = 97.0 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 43/320 (13%), Positives = 100/320 (31%), Gaps = 23/320 (7%)

Query: 18  HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISE 77
                ++     G RIR             ++A   S   R+     R    T    +  
Sbjct: 56  KNGPWWFDLSIDGSRIRQSSGTSDRRAAEELAAKVASDYWRQKKLGERPA-VTWDAAVVH 114

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--------T 129
           + K     +    S  + +     +  +    + R I  + I++ +E++           
Sbjct: 115 WLK----QNQHQRSLETTKQRLRWLTDQLKGENVRNIDRERIQALIETKAAEKYRGSPVA 170

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            ++  + + ++ V+      + ++   P   + + +  +  +   T+   Q+        
Sbjct: 171 GATVNRHMAALSVILHHCHAEGWIDAVP--PIRKLRENSARLTWLTRAQAQRLLEELP-- 226

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGFMKLL 245
           +  R    F L +GLR S+        +              K G +I+V L +  + +L
Sbjct: 227 THLRQMARFALATGLRESNVRLLEWAQVDRERALAWIHADQAKAGKVISVPLNEDALGVL 286

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATA 304
                  + +        +    ++  ++    +AG+     H +R   A+    AG   
Sbjct: 287 REQQGQHKRYVFVYKGAPIGRI-YNHAWQKACVRAGLSGLRFHDLRHTWASWHVQAGTPL 345

Query: 305 HELMATYGWKTVDQAETYTK 324
             L    GW +      Y  
Sbjct: 346 PILQQLGGWASYQMVLRYAH 365


>gi|167621189|ref|ZP_02389820.1| Fels-2 prophage protein [Burkholderia thailandensis Bt4]
          Length = 317

 Score = 97.0 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 39/294 (13%), Positives = 82/294 (27%), Gaps = 27/294 (9%)

Query: 44  IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII 103
              Y+ A      +    + PR+    +  L+  + +       A+++          + 
Sbjct: 3   WERYIRA---KVQETPEWSPPRRDERFVVELVEIWYRH---HGAALSAGADTRRRLLAMC 56

Query: 104 RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLT---SMRVLFKWAVRQE-YVAINPCL 159
              G+      +          R     +A         +R +F    R   +   NP  
Sbjct: 57  EAMGNPRAESFSADLFAEYRTRRLEAGVTANNMNREHAYLRAMFNELGRLGHWTKENPLR 116

Query: 160 SVERPKRKTEGIRPWTKEDMQQFKSFWSEGS--QPRLAFEFLLYSGLRCSDSCRAGVQHL 217
            V   K +   +     + ++   +  +EG      L  +  L +G R  ++       +
Sbjct: 117 HVRAFKVQESELTYLVPQQIRGLLAALAEGRNVHVLLISKVCLATGARWGEAEGLRRTQI 176

Query: 218 QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF---SIWFK 274
           +         K+    +V + D   + L             N         F   S  F+
Sbjct: 177 KGGQIQFVKTKSSKARSVPITDALERELIA--------HFGNYGDSDTGRLFEASSSAFR 228

Query: 275 AKATKAGV----NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
               +AG+     +  H +R   A+     G     L    G  ++     Y  
Sbjct: 229 EAVERAGLVLPDGQLTHVLRHTFASHFMMNGGNILALQRALGHHSLTMTMRYAH 282


>gi|312136007|ref|YP_004003345.1| integrase family protein [Caldicellulosiruptor owensensis OL]
 gi|311776058|gb|ADQ05545.1| integrase family protein [Caldicellulosiruptor owensensis OL]
          Length = 291

 Score = 97.0 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 41/286 (14%), Positives = 98/286 (34%), Gaps = 31/286 (10%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFD----QIIRKSGDFDYRKITTKHIRSGVESR- 126
            WL  ++ +       + N+  S+ +  +           +    +I  +  R       
Sbjct: 2   DWL-KKFEEDLKQTGKSQNTVASYCADINEFLQWFEETYANKFDGRILEQDAREYRNYLL 60

Query: 127 ---KHTPSSAIQFLTSMRVLFKWAVRQEY-VAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
              K  PSS  + + S++   ++ ++      +N C  +         I+  +++++ + 
Sbjct: 61  NVVKQKPSSINRKMASLKNFNQFLIQVGTGTEVNIC-GISVADIHDREIKTISRKELNRL 119

Query: 183 -KSFWSEGSQPRLAF-EFLLYSGLRCSDSCRAGVQHLQNNI---------FSIKTQKTGT 231
            ++ ++ G++  +A  E L+ +G+R S+     VQ +              +++  K   
Sbjct: 120 KRAVYASGNKRDIALIELLINTGVRVSELVSLTVQDIHLTERNGSQNYSYIAVRNGKGNK 179

Query: 232 IITVELP----DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SA 286
              + L         + L+      +  FI+     +         K     AG+ + SA
Sbjct: 180 YREIPLNSQVKRALEEYLSTRSSSSDKIFISQRG-PLRRESVDKIIKKYCRLAGIEEISA 238

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK--GADRI 329
           H +R    T           +    G  +V    + Y +   AD+ 
Sbjct: 239 HVLRHTFCTRLVAENVPLPIISKLAGHLSVQTTMDFYVRVSRADKA 284


>gi|296284090|ref|ZP_06862088.1| phage integrase [Citromicrobium bathyomarinum JL354]
          Length = 299

 Score = 97.0 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 38/262 (14%), Positives = 81/262 (30%), Gaps = 22/262 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP------SSAIQFLT 138
             L+ ++  ++    ++++ ++   D++ +      +                SA + L+
Sbjct: 13  RRLSPHTVRAYIRAAERLLEETPATDWQGVARLGAPALRAQLARRRADGLSNRSAARELS 72

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-------GSQ 191
           ++R    +A  +          +  P+ K    RP T ++         E       G +
Sbjct: 73  ALRAFLAFARAEAGFDDAQAPRLRGPRIKRTLPRPVTPDEALHLAERIGEERREEWTGLR 132

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251
            R     L  +G+R  ++     +H Q       T K G      +       +A     
Sbjct: 133 DRAVLLLLYGAGMRLGEALSLTGEHAQIGETIRVTGKGGKTRVAPILPAIRSAIAAYVAA 192

Query: 252 KET-------FFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGA 302
                      F       ++             + G+  N + H +R   AT    AGA
Sbjct: 193 CPHDLAPDKPLFRGQRGGPLSPGLVQKAMAQVRGEIGLPANATPHALRHSFATHLLGAGA 252

Query: 303 TAHELMATYGWKTVDQAETYTK 324
               L    G  ++   + YT+
Sbjct: 253 DLRSLQELLGHASLGSTQIYTE 274


>gi|268316885|ref|YP_003290604.1| integrase family protein [Rhodothermus marinus DSM 4252]
 gi|262334419|gb|ACY48216.1| integrase family protein [Rhodothermus marinus DSM 4252]
          Length = 309

 Score = 97.0 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 47/270 (17%), Positives = 103/270 (38%), Gaps = 30/270 (11%)

Query: 88  AVNSRISFESYFDQ---IIRKSGDFDYRKITT---KHIRSGVESRKHTPSSAI---QFLT 138
           + N+R ++ +  ++   +  + G      ++     H+   +E  K +  +     + ++
Sbjct: 28  SENTRRAYRNDLEEFFGLFFEDGRLSLENVSKVTFAHVNLYIEHLKRSGCAENTLRRKIS 87

Query: 139 SMRVLFKWAVRQEYVAINPCLS--VERPKRKTEGI-RPWTKED----MQQFKSFWSEGSQ 191
           S+   FKWA   E V  +P +   V+ P+   E      ++E+    ++  ++    G +
Sbjct: 88  SVSSFFKWAEAVELVDRSPVVRLLVQLPRASKERHIVTLSREEARQMLEAARAHPRTGIR 147

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQN----NIFSIKTQKTGTIITVELPDGFMKLLAM 247
                  LLY  LR S++     +H++      +  +   K GT   V++P   M  L  
Sbjct: 148 DEALVRVLLYCWLRRSEAAAMNFEHIRKIGAHYVLRLPRTKKGTEEIVKIPPHCMTSLER 207

Query: 248 TPIGK--------ETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATIS 297
                         +F  N+  ++++A          A + G+++   AH +R    T++
Sbjct: 208 LAAFYGEARGPVWRSFSNNSRGRRLSAQSIYNIVARLAREIGLDRRIGAHTLRHTGITLA 267

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGAD 327
              GA  H++        +     Y    D
Sbjct: 268 VQGGAPLHKVRTQARHADIQTTMVYVHQQD 297


>gi|85372971|ref|YP_457033.1| site-specific recombinase, phage integrase family protein
           [Erythrobacter litoralis HTCC2594]
 gi|84786054|gb|ABC62236.1| site-specific recombinase, phage integrase family protein
           [Erythrobacter litoralis HTCC2594]
          Length = 389

 Score = 97.0 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 56/343 (16%), Positives = 111/343 (32%), Gaps = 26/343 (7%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIP-------AYMSALTGSTPKREYI 61
           P   +     G+  Y  ++  G + RL    ++  +        A    L     +    
Sbjct: 34  PGFGERIHPSGRKSYVLQRTMGGKQRLITIGDAAILTERIAKDVARRLILRIELGQNPAD 93

Query: 62  NSPRKKPT-TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHI 119
              R K T T    +  Y + A   +   ++    + Y    +          +I+    
Sbjct: 94  RKQRGKKTPTYAAFLRHYWEVAA-PAWKPSTLEIHDIYRRTHLEHAFAGKFIDEISHADA 152

Query: 120 RSG--VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPWT 175
                + +R   P +A + +  ++ +F  A    Y+    NP   V+R K   +  R  +
Sbjct: 153 VRWHAMLTRTAGPGAANRAMEILKAMFGKAEAWGYLPEHSNPFRGVKRNK-GRKIERFLS 211

Query: 176 KEDMQQFKSFWSEGSQPR----LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
           + +M +     S+    +         L  +G R  +        +Q     +   KTG 
Sbjct: 212 QAEMARLGEALSQHRADKPNEVAVISLLALTGCRRGEILNLTWGEVQGRKLKLTDTKTGP 271

Query: 232 IITVELPDGFMKLLAMTPI--GKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHG 288
            + + L      ++   P   G E  F  +         F    +    +AG+ +   H 
Sbjct: 272 RV-IWLGKEARAVIDRLPRRRGHERVFQFDVLPVSAIDWFWRMLR---VEAGIEDLRLHD 327

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           +R   A+++A +  T   +    G + V     Y    DR  L
Sbjct: 328 LRHNYASLAARSAETLPMIGELLGHRDVGTTARYAHFDDRSSL 370


>gi|255690817|ref|ZP_05414492.1| tyrosine type site-specific recombinase [Bacteroides finegoldii DSM
           17565]
 gi|260623621|gb|EEX46492.1| tyrosine type site-specific recombinase [Bacteroides finegoldii DSM
           17565]
          Length = 385

 Score = 97.0 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 60/307 (19%), Positives = 114/307 (37%), Gaps = 47/307 (15%)

Query: 71  LKWLISEY----RKSAHWGSLAVNSRISFESYFDQII-----RKSGDFDYRKITTKHIRS 121
               +++Y    R+S  +   + ++  ++ S  + I      R+   +   KI  K I  
Sbjct: 86  FADWLNDYIEGIRRSPSY---SQSTYHNYRSTVNIIKAYLQYRRRPRYLMSKIDKKFIAG 142

Query: 122 GVESRKHT------PSSAIQFLT--------SMRVLFKWAVRQEYVAINPCLSV---ERP 164
            ++  ++T      P +  +            +  +   AV +  +  NP  ++   ER 
Sbjct: 143 LLDFMQNTYRNTKSPDNPKEMSQCTLHLHQAILVRMLNAAVNEGIMNSNPFYALGKHERI 202

Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----NN 220
            ++       TK+++       +     R AF F  ++GLR SD C    + ++      
Sbjct: 203 AKQQAERDYLTKDELLALAEAPTTNETTRRAFLFCCFTGLRYSDVCTLAWRDIKQVDSGL 262

Query: 221 IFSIKT-QKTGTIITVELPDGFMKLLA---MTPIGKETFFINNDKQKMNATQFSIWFKAK 276
           + SI+  +KTG  +T+ L    +K L        G+  F +       + +      K  
Sbjct: 263 VVSIRAMRKTGKQVTIPLNQSALKWLPDRNGCKPGQRVFDMT------SLSACDRCLKKS 316

Query: 277 ATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIK 334
           A  AG+ K  S H  R   AT+S  AG   + +    G   +   + Y       +  I+
Sbjct: 317 AVAAGIEKNVSYHTSRHTFATLSLAAGGDLYTVGKLLGHTNILSTQVYADVVMETK--IE 374

Query: 335 NSRRISS 341
              RIS 
Sbjct: 375 AVNRISE 381


>gi|260174266|ref|ZP_05760678.1| tyrosine type site-specific recombinase [Bacteroides sp. D2]
 gi|315922537|ref|ZP_07918777.1| tyrosine type site-specific recombinase [Bacteroides sp. D2]
 gi|313696412|gb|EFS33247.1| tyrosine type site-specific recombinase [Bacteroides sp. D2]
          Length = 406

 Score = 97.0 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 46/275 (16%), Positives = 99/275 (36%), Gaps = 26/275 (9%)

Query: 90  NSRISFE---SYFDQIIRK---SGDFDYRKITTKHIRSGVESRKH----TPSSAIQFLTS 139
            +   +E    Y ++ I+K     D     +    I       K       +SAI  L +
Sbjct: 132 KTVQRYETTTRYLEEFIKKEYQLSDIALNNLEANFISKFDAFLKIEKGCAQNSAITRLKN 191

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLAF 196
           ++ + + A+  +++  +P  +  R K +       T ++++   +         Q R  F
Sbjct: 192 LKKIIRIALENDWIKKDP-FAYYRFKLEETDPEFLTMDEIKIILAKEFTIKRVEQVRDVF 250

Query: 197 EFLLYSGLRCSDSCRAGVQH-LQNN----IFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251
            F +++GL  SD      +H +++N          QKT  +  + +      +L      
Sbjct: 251 VFCIFTGLAFSDVKDLSPEHLVKDNKGELWIRKNRQKTKIMCNIPVLPVAASILEKYKNV 310

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS-ADAGATAHELM 308
            E          ++  + + + K  A   G++K  S H  R   AT      G +   + 
Sbjct: 311 AE--CTGKLLPVLSNQRMNSYLKEIADVCGIHKNLSTHTARHSYATSICLANGVSMENVA 368

Query: 309 ATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343
              G       + Y +  D+     K+ ++++S +
Sbjct: 369 KMLGHADTSITKHYARVLDQN--IFKDMQKVNSCL 401


>gi|218282511|ref|ZP_03488761.1| hypothetical protein EUBIFOR_01343 [Eubacterium biforme DSM 3989]
 gi|218216498|gb|EEC90036.1| hypothetical protein EUBIFOR_01343 [Eubacterium biforme DSM 3989]
          Length = 343

 Score = 97.0 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 36/279 (12%), Positives = 94/279 (33%), Gaps = 15/279 (5%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH----T 129
           LI+++  +      +  +   + +   ++       +   +TT  +R  +   +     +
Sbjct: 68  LINKFIAAKEIEGCSERTTKYYYATLIKM-DSMITKNVTHLTTDDLRMYLTEYQKINNCS 126

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            +S      ++   F W   + Y+  +P   + + K        ++ E ++  +   +  
Sbjct: 127 KASIDNIRRNLSSFFSWLEEENYILKSPMKRIHKIKTDKVIKETYSDETLELLRDNCN-N 185

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDG----FMKL 244
            +     + L  +G+R  +  R  +  +   N   +   K      V             
Sbjct: 186 LRDLAIIDLLSSTGMRVGELVRLNINDIDFENRECVVFGKGNKERPVYFDARTKIHLRNY 245

Query: 245 LAMTPIGKETFFINNDKQK--MNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG 301
           +          F++ D     +N +   I  +    K G+NK   H  R+  AT + D G
Sbjct: 246 INSRNDDNVALFVSLDAPHDRLNISGVEIRLRQLGRKLGINKVHPHKFRRTVATKAIDKG 305

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
               ++ +  G   +D    Y    ++  +   + + ++
Sbjct: 306 MPIEQVQSLLGHSQIDTTMHYA-MVNQNNVKESHRKFVA 343


>gi|58580222|ref|YP_199238.1| phage integrase family site specific recombinase [Xanthomonas
           oryzae pv. oryzae KACC10331]
 gi|58424816|gb|AAW73853.1| site-specific recombinase, phage integrase family [Xanthomonas
           oryzae pv. oryzae KACC10331]
          Length = 400

 Score = 97.0 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 59/297 (19%), Positives = 105/297 (35%), Gaps = 34/297 (11%)

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119
           YI     +  T++  +  Y  S    +    S  S   +   +++  G +    +T + I
Sbjct: 86  YIQRAPSERMTIEDALKRYL-SEISPTKRPASADSDARHAKPLMQNLGKYSLAALTPELI 144

Query: 120 RSGVESR-------------KHTPSSAIQF---LTSMRVLFKWAVRQEY---VAINPCLS 160
               + R                P S       L  +  LF  A++ E+   +  NP  S
Sbjct: 145 AKYRDDRLAGLDRKDAKGKPAPKPRSPNTVRLDLALLGHLFNVAIK-EWGIGLTYNPVQS 203

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQ 218
           + RP       R  T+E+  +  +     S P L       L +G+R S+        + 
Sbjct: 204 IRRPAPSPGRDRRLTREEETRLMAAVDAHSNPMLGWIVRIALETGMRSSEITGLRRNQVD 263

Query: 219 NNIFSIKTQKTGTII--TVELPDGFMKLLAMT------PIGKETFFINNDKQ--KMNATQ 268
            +   ++ Q+T   +  TV L     +L          PI     F     +  K  A Q
Sbjct: 264 LDRRVVRLQETKNTMSRTVPLTVEATRLFREALNNPVRPIDTNLIFFGEPGRDNKRRAYQ 323

Query: 269 FSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           F+  +      AGV +   H +R  + +   +AG +  E+ A  G K++   + YT 
Sbjct: 324 FNPIWTRIKKDAGVPDFRFHDLRHEAVSRFVEAGLSDQEVAAISGHKSMQMLKRYTH 380


>gi|317057341|ref|YP_004105808.1| integrase family protein [Ruminococcus albus 7]
 gi|315449610|gb|ADU23174.1| integrase family protein [Ruminococcus albus 7]
          Length = 372

 Score = 97.0 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 57/323 (17%), Positives = 105/323 (32%), Gaps = 55/323 (17%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
            + +I  +       +    +        D++I   G     KIT + I+  + S    P
Sbjct: 44  FQKVIEMWATEYAELNHRSTTLQREHLIADRVIPALGHLRIDKITARDIQKFINSLA-KP 102

Query: 131 SSAIQ------------FLTSMRVLFKWAVRQEYVAINPCLSVERPKR-------KTEGI 171
            +  +             L+ +  +F++A+R + V  NPC  V  PK        K    
Sbjct: 103 GANKRNGKPLSQKTMRHHLSFISSIFEYAIRLDMVNTNPCSKVMIPKIDASGKAYKKPEK 162

Query: 172 RPWTKEDMQQFKSFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQ------------ 218
             +TKE  ++F     E     ++ F   +Y+G R  +      +++             
Sbjct: 163 HIYTKEQAREFMKILREAPMKYKVFFTLAIYTGCRRGELLGIEWKNIDFERGTVKIDHTS 222

Query: 219 ----NNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKETF--------------FINN 259
               +        KT  +   V+LP   + LL      ++++              F   
Sbjct: 223 NYTADKGIYSDATKTERSTRMVDLPPAVIGLLKAYKHDQDSYKANLGDEWQEHDRLFTKW 282

Query: 260 DKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKT-VD 317
           D Q M+      W   +  +        H  R F A++  +AG     + A  G  T V 
Sbjct: 283 DGQPMHPNTPYTWLMRECERRNFPFYGLHSFRHFFASVEIEAGVDPTTVAAMLGHSTPVT 342

Query: 318 QAETYTKG-ADRIRLGIKNSRRI 339
              TY+   A+  R        +
Sbjct: 343 TMSTYSHYFAESKRRASNIMAEV 365


>gi|239941212|ref|ZP_04693149.1| phage integrase family site specific recombinase [Streptomyces
           roseosporus NRRL 15998]
 gi|239941232|ref|ZP_04693169.1| phage integrase family site specific recombinase [Streptomyces
           roseosporus NRRL 15998]
 gi|239987688|ref|ZP_04708352.1| phage integrase family site specific recombinase [Streptomyces
           roseosporus NRRL 11379]
          Length = 324

 Score = 97.0 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 45/249 (18%), Positives = 86/249 (34%), Gaps = 26/249 (10%)

Query: 109 FDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
            D   I  +H+ + + +  R+ + S+A     S++ +F W V +E +  +P  +++ P  
Sbjct: 66  ADLDDIHREHVEAYITATMRRTSASNAHNHFRSLKTMFNWLVDEEELDRSPMRTMKPPTL 125

Query: 167 KTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSC--RAGVQHLQNN 220
               +      D+ +        +    +       LL +G+R S+    R G   L   
Sbjct: 126 PEVEVPVIPDADLSKLFKACKGTTYADRRDTALLMLLLDTGVRLSELTDRRVGDLDLDLK 185

Query: 221 IFSIKTQKTGTIITVELPDGFMKLLAM----------TPIGKETFFI----NNDKQKMNA 266
           +  +   K G    V   +     L             P+  +  ++     N  Q++  
Sbjct: 186 VLHV-LGKGGKTRPVPFGNTCATALDRYLRAAAKHKGKPLDDDEMWLWWGHRNKGQRLTI 244

Query: 267 TQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
                  K +  +AG+     H  R   A      G    +LM   GWK+      Y   
Sbjct: 245 WGVGTMLKRRCAQAGIGELHPHQFRHTFAHQWKVNGGNEDDLMRITGWKSRQMLSRYAAS 304

Query: 326 A--DRIRLG 332
           A  +R R+ 
Sbjct: 305 AGTERARMA 313


>gi|217978007|ref|YP_002362154.1| integrase family protein [Methylocella silvestris BL2]
 gi|217503383|gb|ACK50792.1| integrase family protein [Methylocella silvestris BL2]
          Length = 314

 Score = 97.0 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 86/278 (30%), Gaps = 37/278 (13%)

Query: 92  RISFESYFDQIIRKSGDFDYRK--------ITTKHIRSGVESRKHTPSSAIQFLTSMRVL 143
           + + E+Y   +   +G     K               + +E R   P+S+ + L+++R L
Sbjct: 26  KNTLEAYARDLADYAGRLKAAKKSPIEATGDDIGAYIASLEKRGLKPASSARKLSAIRQL 85

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA-------- 195
            ++ V + Y + +P   +E P+R     +  +  ++ +  +   EG              
Sbjct: 86  HRFLVAESYRSDDPAAIIEGPRRGRGLPKTLSIAEVDRLLAVSKEGLDAAARSPGEQLRA 145

Query: 196 ------FEFLLYSGLRCSDSCRAGVQ-----------HLQNNIFSIKTQKTGTIITVELP 238
                  E L  +GLR S+                    +     +    T     +   
Sbjct: 146 LRTACLIELLYATGLRVSELVSLPKSIARGKDPLIPIRGKGGRDRLAPISTKAREAIAAY 205

Query: 239 DGFMKLLAMTPIGKETFF-INNDKQKMNATQFSIWFK---AKATKAGVNKSAHGVRKFSA 294
              +  LA         F  +++   +    F+   K   A A  +    S H +R   A
Sbjct: 206 RALLDRLAPGAASGPWLFPADSESGHLTRQAFARDLKTAAAAAGLSAARVSPHVLRHAFA 265

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           +     GA    +    G   +   + YT   D     
Sbjct: 266 SHLLQNGADLRVVQELLGHADISTTQIYTHVLDERMKA 303


>gi|126434804|ref|YP_001070495.1| phage integrase family protein [Mycobacterium sp. JLS]
 gi|126234604|gb|ABN98004.1| phage integrase family protein [Mycobacterium sp. JLS]
          Length = 388

 Score = 97.0 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 65/371 (17%), Positives = 112/371 (30%), Gaps = 51/371 (13%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT-----TLKW 73
           G     F    GRR + P    +        +L  +   R+    P    T     T + 
Sbjct: 17  GHYRARFTGPDGRRYKAPTTFLTKGDARAWLSLQQADIIRKAWTPPEATRTVDRKLTFRD 76

Query: 74  L--ISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESR-KHT 129
              +  Y +     +L + +R  +     + I    G      IT   +R+      K T
Sbjct: 77  YATVWLYNRRVKGEALKMRTREHYAWLLAEHIYPTFGAMPVGSITADDVRAWHNRMGKAT 136

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPC-LSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           P++       +  +   AV     A++PC +      R+ + IRP T  +++   +    
Sbjct: 137 PTARSHAYGLLNAIMNTAVADGKAALSPCVIRGAGTSRRVKKIRPATLAELEALTNAMPA 196

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ------------------------------ 218
             Q         +  LR  +      + ++                              
Sbjct: 197 PYQA--MILLASWCALRFGELTELRRKDVELSTSVERDDQGQEVTVHEGLIHVERAVVRA 254

Query: 219 NNIFSIKTQKTGTII-TVELPDGFMKLLAM------TPIGKETFFINNDKQKMNATQFSI 271
            + + + T K+      V +P   + ++           G    F       +       
Sbjct: 255 GDGYEVTTPKSDAGTRDVAIPPHLVPVIEAHLADHVGIWGDALLFPAKHGGHLAPATLYR 314

Query: 272 WFKAKATKAG-VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD-RI 329
            F    T AG  +   H +R   A ++A  GAT  ELMA  G  T   A  Y   A  R 
Sbjct: 315 RFYTARTAAGRPDLRFHDLRHSGAVLAAQTGATLAELMARLGHSTPQAAMRYQHAAQGRD 374

Query: 330 RLGIKNSRRIS 340
           R       RI+
Sbjct: 375 RQIAAALSRIA 385


>gi|254773716|ref|ZP_05215232.1| prophage integrase [Mycobacterium avium subsp. avium ATCC 25291]
          Length = 384

 Score = 97.0 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 59/354 (16%), Positives = 117/354 (33%), Gaps = 48/354 (13%)

Query: 8   PPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFI-------------PAYMSALTGS 54
           P  + K     G+  Y  R        +  P   +                A+ S     
Sbjct: 6   PRGIRKRLNAAGEPRYQVR------YLIRDPAAPSGWVETSATFPTLREAKAFKSERDNE 59

Query: 55  TPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRK 113
                    PR   T L+ +  ++  S    +++  +   +  +++ +I  + G     +
Sbjct: 60  AALGARRFDPRLGRTPLQRIWVQFSDSKK-PAVSPKTWSGYTQHWELRIKPRFGHVPVDE 118

Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR-KTEGIR 172
           I+   +++ V+     P + +  L  +R +   A +   +  NP L V   +  + E  R
Sbjct: 119 ISRGDVQAFVDDLTVGPWAKVSTLRLLRSILDVAHQDGRIHRNPALGVSAGRIPERERHR 178

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-------------- 218
             T +++Q   +   +          L Y+GLR S+     V+ +               
Sbjct: 179 YLTAQEVQTLATACGD---QGDVVTILAYTGLRWSELVGLRVKDIDLVARRLYVRRAAPE 235

Query: 219 -NNIFSIKTQKTGTII-TVELPDGFMKLLAMTPIGKET--FFINNDKQKMNAT----QFS 270
                 I   KT   I TV LP   + +      G+      + +    M  +    + +
Sbjct: 236 VEGRIVIGPPKTRAGIRTVPLPQVVVDIFKTRISGRAPDEPAVTSPNGAMLRSNNWRRHT 295

Query: 271 IWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYT 323
            W KA         + H +R   A+++  +GA    +  T G  T    A  Y+
Sbjct: 296 HWNKALKKTNLAPLTIHDLRHTYASLARKSGADLRYVQKTMGHSTPTVTANIYS 349


>gi|326335381|ref|ZP_08201569.1| mobilizable transposon [Capnocytophaga sp. oral taxon 338 str.
           F0234]
 gi|325692446|gb|EGD34397.1| mobilizable transposon [Capnocytophaga sp. oral taxon 338 str.
           F0234]
          Length = 410

 Score = 97.0 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 40/274 (14%), Positives = 89/274 (32%), Gaps = 22/274 (8%)

Query: 85  GSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQ-------- 135
            + +   RI+++   + + +   G   + +I  K            P    +        
Sbjct: 140 KNSSDAIRINWKRVIELLKLFSGGRVKFAQIDMKFSEDFKNFLLSAPCGGNKKGTISVNT 199

Query: 136 ---FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
              + +  + + K A    Y   +    ++    +       ++E++        +    
Sbjct: 200 SATYFSIFKAILKQAFIDGYFLSDLSGKIKGIADRESRREYLSEEELNILAKTPCDNDIL 259

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGFMKLLAMT 248
           R A  F   +GLR SD  R   + +  +          +KT  +    +    ++L    
Sbjct: 260 RRASLFSALTGLRLSDIQRLKWKEIIEDNDKIELHFTQKKTKGVEYKPISKQALELCGER 319

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHE 306
              ++  F N       +     W     TKAG++K  + H  R   AT+    G   + 
Sbjct: 320 RDLEDLVFENLPDPAWISRPLKKWI----TKAGIHKNITFHCFRHTFATLQLANGTDIYT 375

Query: 307 LMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
           +    G   V   + Y K  D+ ++      +++
Sbjct: 376 VSKMLGHTNVKTTQAYAKVIDKNKIKAAEVIKLN 409


>gi|307704159|ref|ZP_07641083.1| phage integrase family protein [Streptococcus mitis SK597]
 gi|307622265|gb|EFO01278.1| phage integrase family protein [Streptococcus mitis SK597]
          Length = 384

 Score = 97.0 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 61/366 (16%), Positives = 116/366 (31%), Gaps = 57/366 (15%)

Query: 11  VTKERTRHGKIIYYF-------RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63
           + K +T+ G I+YY          G  +R              Y + L            
Sbjct: 3   IHKYKTKKG-ILYYVSFYIGLDAYGKKKRHLKRGFKTKKEAKLYEARLEAGVVAPTVSTD 61

Query: 64  PRKKPTTLKWL----ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119
                 T K L     + Y  +    + +  ++  +  +   I    GD    +I+    
Sbjct: 62  KPNPKVTYKELYQEWFNAYVGTVEETT-SSQTKNIYRIHILPI---FGDKFIDQISPLDC 117

Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK-RKTEGIRPWTKED 178
           ++ +  +  T  +  Q  +    +F +A+   Y+  NP  +V  PK +KT     W+ E+
Sbjct: 118 QNFITQKSQTFKNIKQIKSYTSKIFDFAINMNYIDRNPMKNVIMPKIKKTRSDNFWSLEE 177

Query: 179 MQQFKSFWS--EGSQPRLAFEFLLYSGLRCSDSCRAGVQH----------------LQNN 220
           +  F       E  +    F  L +SGLR  +                        +   
Sbjct: 178 LHHFLDIVKETEPFKHFALFRLLAFSGLRKGELYALKWADINFDSNLLNIDKSLGRIDGK 237

Query: 221 IFSIKTQKTGTIITVELPDGFMKLLAMT-----------PIGK--------ETFFINNDK 261
                T+   ++ T+ L D  + ++              P+ K          +  +NDK
Sbjct: 238 AIEKSTKNESSVRTIYLDDETIDIIKQWRNFYLKEQSQFPLTKLNISNEYMFYYISSNDK 297

Query: 262 -QKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
            + ++A   +        K  +   S HG R   AT+ ++ G          G  +    
Sbjct: 298 IEPLHADYINNVLNRIIKKHKLKPISPHGFRHTHATLMSEIGIDPSNTSKRLGHASSQMT 357

Query: 320 -ETYTK 324
            + YT 
Sbjct: 358 LDVYTH 363


>gi|15838156|ref|NP_298844.1| hypothetical protein XF1555 [Xylella fastidiosa 9a5c]
 gi|9106598|gb|AAF84364.1|AE003985_5 phage-related protein [Xylella fastidiosa 9a5c]
          Length = 284

 Score = 97.0 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 41/225 (18%), Positives = 78/225 (34%), Gaps = 15/225 (6%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRK 127
           T + +   YR      + A N++     Y + +++   D    +  I   +IR  ++ R 
Sbjct: 2   TFRHVAERYRAEVI-PTKAHNTQRMHHIYLNYLLQFFDDPPAPFESIKPVNIRQYLDWRP 60

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVA-INPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
               SA + +     L+ WA  +      NPC  + R K +   +     +D      + 
Sbjct: 61  FKV-SANREVALFSHLWNWARSKGVTDLPNPCGGIRRNKERGRDVYI---DDTTYRAVYH 116

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
           +     R A +    +G R SD      +H+ N    I   KTG  + + +      L+ 
Sbjct: 117 AADQTLRDAMDLAYLTGQRVSDVVSMDERHIVNGALEICQAKTGVKLAIAITGELAVLIK 176

Query: 247 MTPIGKE-------TFFINNDKQKMNATQFSIWFKAKATKAGVNK 284
                K           ++    +++ T     F      AG+ K
Sbjct: 177 RIFDHKRGLKLRSTRLIVDAKGLELSRTGLRYRFDKARVAAGIAK 221


>gi|258653763|ref|YP_003202919.1| integrase [Nakamurella multipartita DSM 44233]
 gi|258556988|gb|ACV79930.1| integrase family protein [Nakamurella multipartita DSM 44233]
          Length = 638

 Score = 97.0 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 47/315 (14%), Positives = 98/315 (31%), Gaps = 52/315 (16%)

Query: 64  PRKKPTTLKWLISEYRK---SAHW--GSLAVNSRISFESYFDQIIRKSGDF-DYRKITTK 117
           P   P  ++ ++  Y +    A +        +R       + + +   +  + R++   
Sbjct: 259 PEPCPPAIRAVVERYLRLRLEAKFDRPQTVRLTREGLRRLVNWLAKVHPEITNLRQLDRS 318

Query: 118 HIRSGVE-------SRKHTPSSAIQFLTSMRVLFKWAVR---QEYVAINPCLSV----ER 163
            I   ++        +   P +     +++  +  +        +  + P   +    + 
Sbjct: 319 LIEDYLQWLPGCLSQQTGQPLTPSTVASAISAVGAFCRDTAVWGWTDV-PGRPLVTTRDT 377

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQNN- 220
           PK+     R    +++    +     + P  R A   L +SG R  +  R     L ++ 
Sbjct: 378 PKQPKPLPRFLPADELAAIMTAIDALADPAQRAALLLLRWSGARRDEIRRLTWDCLDHDL 437

Query: 221 ----IFSIKTQKTGTIITVELPDGFMKLLAMTPIGK-----------------ETFFINN 259
                  I   K+ T   V L       L                           F+ +
Sbjct: 438 HGNPRLRIPVGKSYTERIVPLHPDAAAALRGAITAAKAQNAIARHDQHASRAVNYVFMRH 497

Query: 260 DKQKMNATQFSIWFKAKATKAGV-------NKSAHGVRKFSATISADAGATAHELMATYG 312
            K     T F   F+     AG+         SAH  R    T  A+ GA    +MA  G
Sbjct: 498 GKLLSKTTLFDDAFRTVCGAAGLLDAHGVPKVSAHRFRHTLGTQLAEGGARIQTIMAILG 557

Query: 313 WKTVDQAETYTKGAD 327
            ++ + +  Y++ +D
Sbjct: 558 HRSAEMSLVYSRISD 572


>gi|34762210|ref|ZP_00143217.1| DNA integration/recombination/invertion protein [Fusobacterium
           nucleatum subsp. vincentii ATCC 49256]
 gi|27888171|gb|EAA25230.1| DNA integration/recombination/invertion protein [Fusobacterium
           nucleatum subsp. vincentii ATCC 49256]
          Length = 348

 Score = 97.0 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 48/283 (16%), Positives = 102/283 (36%), Gaps = 32/283 (11%)

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG---- 122
              T   L  ++  +    +L+  S + +++  + +        + K+TT  IR      
Sbjct: 55  SDRTNAELWKKFFLTKKAENLSDKSLLYYKNSLE-LFSLFVKKSFLKVTTDDIRLYLAVE 113

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
            E  +    S       +   F +   +EY++ NP   +++ K +      +T+ ++++ 
Sbjct: 114 REKNQQKAVSIDNIRRILNSFFSFLNEEEYISNNPVKRIKKVKGQKTEKTAFTQLELEKL 173

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
           +    E S  +   E L+ S +R ++     ++ +      IK  + G    +     FM
Sbjct: 174 RMAC-ENSLEKAIMEVLISSAIRATELANIKIRDIDFEKNEIKIVRKGNKEGI----AFM 228

Query: 243 KLLAMTPIGK----------ETFFINND-----------KQKMNATQFSIWFKAKATKAG 281
             +A   I K             ++ +              K+    F    K+ AT+A 
Sbjct: 229 STIAALAIKKYISERGNYNTPYLWVVDGLMYKCYKNQILGSKIETEGFRRVLKSIATRAK 288

Query: 282 V-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           V N   H  R+  AT++   G    E+    G + ++    Y 
Sbjct: 289 VENVHPHRFRRTFATMALKKGMDVEEIQQVLGHQNINTTMIYV 331


>gi|325690779|gb|EGD32780.1| phage integrase family integrase/recombinase [Streptococcus
           sanguinis SK115]
          Length = 328

 Score = 97.0 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 37/279 (13%), Positives = 88/279 (31%), Gaps = 15/279 (5%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----SRKHT 129
           L+  +  +      +  S   +    + +     +   R ITT  +R+ +      RK +
Sbjct: 53  LLELFISAKRIEGCSEKSLKYYRMVIENMFTSL-NLTVRDITTSDLRTYLAHYQRERKSS 111

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
             +           F W   ++++  +P   + + K        ++ E ++  +    E 
Sbjct: 112 KVTIDNMRRIFSSFFSWLEDEDFILKSPVRRIRKIKTDKTIKETFSDEGLELLRDACDE- 170

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG-----FMKL 244
            +     + L  +G+R  +  R   + +            G    +   D       +  
Sbjct: 171 IRDLAMIDLLASTGMRVGELVRLNREDINFYERECLVFGKGNSERIVYFDARTKIHLINY 230

Query: 245 LAMTPIGKETFF--INNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG 301
           L          F  +++   ++         +    KA +NK   H  R+  AT + D G
Sbjct: 231 LDSRQDDNPALFVSLSSPHDRLLIGGVETRLRQLGEKADLNKVHPHKFRRTLATRAIDKG 290

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
               ++    G   +D    Y    ++  +   + + I 
Sbjct: 291 MPIEQVQHLLGHVKIDTTMHYA-MVNQANVKNSHRKYIG 328


>gi|294777960|ref|ZP_06743395.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
 gi|294448169|gb|EFG16734.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
          Length = 354

 Score = 97.0 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 43/290 (14%), Positives = 93/290 (32%), Gaps = 35/290 (12%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRK--------SGDFDYRKITTK---------- 117
             Y+    +       R     +  +             G   + +I             
Sbjct: 70  DRYKLKGDFLEY---YRQQLRKHDQKWEFVYLHFKNFVHGKCTFEEIDIDLCNKFREYLL 126

Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
             +    + + T +SA  + ++ R   K   R   +  N    +E+ + +       + E
Sbjct: 127 SAKKLRRNGRITRNSASGYWSTFRGFLKILYRNGLIKTNVNDFLEKIETEDTMKEALSVE 186

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-----QNNIFSIKTQKTGTI 232
           ++ Q      +    ++A  F   + LR SD      + +           I TQK    
Sbjct: 187 ELYQLAETPCKKPIVKIASLFSCMTSLRISDILALRWEDIVDYSAGGKCVHIITQKNKAE 246

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290
             + + +  + L+  +   K   F     + +  +   +  K     AG+ K  + H  R
Sbjct: 247 DIIPISEEALGLIGYSSDKKGLVF-----KGLMRSWTQMPMKEWIRSAGITKNITFHSYR 301

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
           +  AT+   AG     + +    K++     Y K  D  +   + S++I+
Sbjct: 302 RTFATLQGAAGTDIRTIQSIMAHKSITTTMRYMKVVDSNKR--EASKKIT 349


>gi|292557929|gb|ADE30930.1| putative transposon integrase, Tn916 ORF3-like protein
           [Streptococcus suis GZ1]
          Length = 432

 Score = 97.0 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 59/392 (15%), Positives = 109/392 (27%), Gaps = 88/392 (22%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPA-------YMSALTGSTPKREYINSPRKK 67
             R  K     R G  +R      +  ++  A       Y   L     K E I   +  
Sbjct: 19  TKRKDKSRVVLRTGESQR--ADGTYHFSWTDANHKRRYVYAKTLDELRYKEEQIAKDKSD 76

Query: 68  PTTLKWLISEYRKSAH----WGSLAV----NSRISFESYFD-QIIRKSGDFDYRKITTKH 118
              ++     Y         W  L      N+  +++  ++  +  + G      +    
Sbjct: 77  GIKVEA---RYTTVNDIYELWKDLKRGLKNNTFENYKYMYETFVRHQIGSKTVSSLRKTD 133

Query: 119 IRSGV----ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV-ERPKR----KTE 169
           I+       + R   P++     T +  +   AV  +Y+  NP  +V +  K+    +TE
Sbjct: 134 IKRFYNYLADERHLKPATIDNIHTVLHQILDMAVDDDYIRNNPSNNVLKELKQSHCFQTE 193

Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLA---FEFLLYSGLRCSDSCRAGVQHLQNNI----- 221
             R  TK + + F  +       +     F  ++ +GLR  +        +         
Sbjct: 194 KRRALTKPEQELFLDYLKNSPTSKYWYPVFAVMIGTGLRVGEVTGLRWCDIDLEEGIIDV 253

Query: 222 -------------------FSIKTQKTGT-IITVELP-------------DGFMKLLAMT 248
                              F++ T KT      V +                 + L    
Sbjct: 254 NHTLVYYDHRTEGSKRGCYFNVNTTKTPAGRRKVPMLGFVKEAFLMEKERQELLDLHCEA 313

Query: 249 PIGKET--FFINNDKQKMNATQFSIWFKAKATKAG--------------VNKSAHGVRKF 292
            +   T   FIN   Q  +    +   +                      + S H +R  
Sbjct: 314 TVDGYTDFIFINRFGQPQHQATLNKAIRRIIRDCNDEQLLKDENAEVLLPHFSCHSLRHT 373

Query: 293 SATISADAGATAHELMATYGWKTVDQA-ETYT 323
             T   +AG     +  T G K +      YT
Sbjct: 374 FTTRMCEAGVNVKVIQDTLGHKDISTTLNIYT 405


>gi|260494457|ref|ZP_05814587.1| integrase/recombinase [Fusobacterium sp. 3_1_33]
 gi|260197619|gb|EEW95136.1| integrase/recombinase [Fusobacterium sp. 3_1_33]
          Length = 328

 Score = 97.0 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 42/295 (14%), Positives = 96/295 (32%), Gaps = 44/295 (14%)

Query: 88  AVNSRISFESYFDQIIR--KSGDFDY---------RKITTKHIRSGV----ESRKHTPSS 132
           +  +   +  +    +     G+ D+         + I  + + + +    E RK   +S
Sbjct: 33  SEKTVKDYMFHLKDFLHFVYDGENDFSISEVIPLMQDIEKEDVEAYIVHLFEDRKLKKTS 92

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW--TKEDMQQFKSFWSEGS 190
               L++++ L+K          NP   ++  K           + +D+++    +   S
Sbjct: 93  VNTILSALKSLYKELETNGL--KNPVKYIKLFKVNRNIENILKVSIDDIRKIIGLYKIDS 150

Query: 191 QPR----LAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDGFM 242
           + +         L Y+G+R  +      +H         F +   K+G  +   +    +
Sbjct: 151 EKKYRNITILYTLFYTGMRSKELLTLQFKHYLKRENEYFFKLIETKSGKDVYKPIHKSLV 210

Query: 243 K-------------LLAMTPIGKETFFINN--DKQKMNATQFSIWFKAKATKAGVNKSAH 287
           K              L +  + ++  F  +  D   ++    +   +      G + S H
Sbjct: 211 KKLEEYKEYLMSMYSLDLKDLEEKYIFSTSVLDNSPLSYRSLNAIIQDMGKLIGKDISPH 270

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
            +R   AT  + +GA   E+    G       E Y     R  L  K   ++  +
Sbjct: 271 NIRHAIATELSLSGADILEIRDFLGHSDTKVTEVYINA--RSILEKKVLEKLPEI 323


>gi|319406320|emb|CBI79957.1| integrase/recombinase XerC [Bartonella sp. AR 15-3]
          Length = 321

 Score = 97.0 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 36/261 (13%), Positives = 75/261 (28%), Gaps = 25/261 (9%)

Query: 89  VNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESRK---HTPSSAIQFLTSMR 141
           V        +   + +  G          +    +R+ +  R+       S  + + S+R
Sbjct: 44  VAYERDTRQFLFFLCKHLGYQPTLNDLADLRVADLRAYLAYRRTQNINARSLSRNMASLR 103

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE-------DMQQFKSFWSEGSQPRL 194
             F +  R++ V +     V  PK      +  T E       +  Q ++     ++   
Sbjct: 104 SFFNYLSREQLVNVPAAKLVRTPKYPKSLPKSLTIESALRIVREDNQQETEPWIIARNTA 163

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSI--KTQKTGTIITVELPD----GFMKLLAMT 248
               L   G+R S++     +   +        T K G    + L           L   
Sbjct: 164 ILILLYGCGMRISEALALTPEKFSDPNIKSLPITGKGGKTRLIPLIPIAHTAIKNYLKCC 223

Query: 249 P---IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGAT 303
           P   +  +  F     + +         +      G+ ++   H +R   AT     G  
Sbjct: 224 PYPLVNNQPIFRGVRGKPLQPAIIQRTVQNLRAHLGLPETTTPHALRHSFATHLLSRGGD 283

Query: 304 AHELMATYGWKTVDQAETYTK 324
              +    G   +   + YT 
Sbjct: 284 LRTIQELLGHACLSTTQIYTH 304


>gi|301057714|ref|ZP_07198787.1| site-specific recombinase, phage integrase family [delta
           proteobacterium NaphS2]
 gi|300448175|gb|EFK11867.1| site-specific recombinase, phage integrase family [delta
           proteobacterium NaphS2]
          Length = 345

 Score = 97.0 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 52/289 (17%), Positives = 100/289 (34%), Gaps = 37/289 (12%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVES--R 126
           TLK    E+ +  H   +   +   ++      +  K GD    +I  + ++   +   +
Sbjct: 31  TLKRYAEEWFQLPH--KMNRFTLERYKGTMVRHVYPKLGDHQIDQIKRRDLKVFFDRLLK 88

Query: 127 KHTPSSAIQFLTS-MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           K    S+ Q + S +  +F+ A+  E + +NP   +   KR++  I+P+T++    F   
Sbjct: 89  KGMKESSFQLIKSPLSKIFQHAIDDELIQVNPLSGISHSKRRSIDIKPFTEDQAFLFLEA 148

Query: 186 WSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQ---------NNIFSIKTQ---KTGT 231
             +  +      F  LL +G+R  +      + +           +IF        K G 
Sbjct: 149 AKDYRKGVYYPHFLTLLRTGVRIGELLGLQWKDIDFKSRELVLKRHIFQTTVMDATKNGQ 208

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT--QFSIWFK------------AKA 277
           I TV++     + L      K+        +  +          K               
Sbjct: 209 IRTVDMTPHLSETLRALKKEKQ-INALKFGRPFSEWCFSLGNKVKPMSMPPIRKAMFEIL 267

Query: 278 TKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
            KAG+ K   H  R   ATI    G    ++    G  ++    + YT 
Sbjct: 268 EKAGLPKMRLHDFRHSYATIRLLKGHDIGDVSYQMGHSSIKVTFDIYTH 316


>gi|198277427|ref|ZP_03209958.1| hypothetical protein BACPLE_03641 [Bacteroides plebeius DSM 17135]
 gi|198269925|gb|EDY94195.1| hypothetical protein BACPLE_03641 [Bacteroides plebeius DSM 17135]
          Length = 293

 Score = 97.0 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 45/255 (17%), Positives = 93/255 (36%), Gaps = 23/255 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVESRKHTPSS---AIQFL 137
            + +  + +S+    D+          +F++  +    +R  V S      +     + L
Sbjct: 14  RNYSEKTILSYGIDLDEFEAYFKSVDEEFEFTSVDADVVRGWVLSLMDEGRAETTVNRKL 73

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-----EGSQP 192
           +S+R  + + +RQ+ VA++P   V  PK+K         E M Q    +      EG + 
Sbjct: 74  SSLRSFYHYLLRQKLVAVDPVAKVVGPKKKKPLPVFVRDEAMNQLLDGFEFPQTFEGVRD 133

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAMTPIG 251
           +   E    +G+R ++      + +  +   IK T K      +   D   ++L+     
Sbjct: 134 KAMLEVFYSTGMRRAELITLRDEDVDFSALVIKVTGKRNKQRLIPFGDRLQEVLSAYLQE 193

Query: 252 K--------ETFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSAHGVRKFSATISADAG 301
           +        E FFI     +++ +  +   K           KS H +R   AT   +  
Sbjct: 194 RARFYSGECEAFFIRKSGVRLSPSSVNYIVKRYLSKVVTLKKKSPHVLRHTFATSMLNHQ 253

Query: 302 ATAHELMATYGWKTV 316
           A    +    G +++
Sbjct: 254 AELEAVKELLGHESL 268


>gi|254452044|ref|ZP_05065481.1| putative phage-related integrase [Octadecabacter antarcticus 238]
 gi|198266450|gb|EDY90720.1| putative phage-related integrase [Octadecabacter antarcticus 238]
          Length = 385

 Score = 97.0 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 56/322 (17%), Positives = 120/322 (37%), Gaps = 20/322 (6%)

Query: 20  KIIYYFRKGHGRRIRLPYPHESTFI--PAYMSALTGSTPKREYINSPRKKPTTLKWLISE 77
           K  +  R+ +GR +R  +          A + A        + +   ++K    K ++ E
Sbjct: 44  KSWFMMRRFNGRMLRTTFGRYPDLTLANARLKAPNVLADMSDGLTQGQRKTDLFKVVLDE 103

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQ 135
           + K     + +V       + +   +   G      IT + +   ++      +P +A +
Sbjct: 104 WLKKDQAKNKSV--HQVRVAMYKHALPAFGPMPVASITKRDVNRLIDKIVDAGSPVAANR 161

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-GSQPRL 194
            L   +  F W   ++ + ++P  ++  P ++    R  T E+++ F +   + G     
Sbjct: 162 VLAFTKRFFSWCKERDILELSPAEAIRPPSKEKTRDRVLTLEEIKGFWAACDQMGYPWGP 221

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSI--KTQKTGTIITVELPDGFMKLLAMTPI 250
            F+ LL +G R  +  +A    +   +   ++  +  K G    ++L D  + ++   P 
Sbjct: 222 IFQLLLLTGARLREVSQASWGEVSIADGTLNLPARRTKNGRAHQIQLSDQAINIIQALPK 281

Query: 251 --GKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADA-GATAHE 306
             G++  F  N    ++   FS   K     +GV +   H +R+  AT S +  G +   
Sbjct: 282 VEGQDLIFTTNGTTAVS--GFSKVKKRLDIISGVADWRFHDLRRSFATHSTERLGISPVV 339

Query: 307 LMATYGWKTVD---QAETYTKG 325
                   T      A  Y  G
Sbjct: 340 ADKILNHVTGQVRGVAAIYQHG 361


>gi|121535734|ref|ZP_01667537.1| phage integrase family protein [Thermosinus carboxydivorans Nor1]
 gi|121305699|gb|EAX46638.1| phage integrase family protein [Thermosinus carboxydivorans Nor1]
          Length = 393

 Score = 97.0 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 42/305 (13%), Positives = 92/305 (30%), Gaps = 37/305 (12%)

Query: 48  MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKS 106
             AL        Y+++ +    T+   ++++       ++A ++   +E      +I   
Sbjct: 52  RDALAAQYEAAYYVDADKI---TVGDWLAKWLDVYARPAVAPSTYDWYERICRVHLIPAI 108

Query: 107 GDFDYRKITTKHIRSGVESRKHTPSSAIQFL---TSMRVLFKWAVRQEYVAINPCLSVER 163
           G     ++    ++  + S      SA       + + +  + A +   +   P   V  
Sbjct: 109 GHLRLSRLQQMAVQQLLNSLVDAGKSARTVQAVHSVLAMALRVARKHGLLRTLPTDDVAV 168

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223
           P+ + +  RP T ++     +          A      +GLR  +        +  +   
Sbjct: 169 PQVRKQDKRPLTPDEWDALLTAAQTAPDIFAALVVEWATGLRRGELLGLMWDDIDFDRCL 228

Query: 224 IKTQKT----------------GTIITVELPDGFMKLLAMTPIGKE-------------- 253
           I  ++                  T   + +P   M++L      +               
Sbjct: 229 INVRRAVQIRRGGCVLADPKTEATKRVLPVPKEVMQVLRAHRARQMQCRLAAGPAWQDCG 288

Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGW 313
             F  +     +   +S  F   A  AG++   H +R    +    AGA   E     G 
Sbjct: 289 LVFPTSGGTLYDPRNWSKRFARIAKAAGLDIGVHHLRHDLTSRIVAAGAPVKEAQYRLGH 348

Query: 314 KTVDQ 318
            TV  
Sbjct: 349 ATVKM 353


>gi|299141859|ref|ZP_07034994.1| mobilizable transposon protein, int protein [Prevotella oris C735]
 gi|298576710|gb|EFI48581.1| mobilizable transposon protein, int protein [Prevotella oris C735]
          Length = 418

 Score = 97.0 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 70/208 (33%), Gaps = 10/208 (4%)

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           + ++A  + +  +   K A    Y+ I+    ++  + +       T +++ +  +   E
Sbjct: 199 SRNTASTYFSIFKAALKQAFIDGYLTIDLSAKIKGIQEQESRREYLTLDELNKLANTPCE 258

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI----FSIKTQKTGTIITVELPDGFMKL 244
               + A  F   +GLR  D  +     +             +KT  +  + + +   KL
Sbjct: 259 RDVLKRAALFSALTGLRHCDIQKLKWNEIAIEGNQAKLLFTQKKTKGVEYMPISEQAFKL 318

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302
                  ++  F         +       +A   KAG+ K  S H  R   AT+    G 
Sbjct: 319 CGEPRQPEQLVFEGLPNPSWISRSL----RAWIEKAGIQKHLSFHCFRHTFATLQLANGT 374

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIR 330
             + +    G   V   + Y K  D  +
Sbjct: 375 DIYTVSKMLGHTNVKTTQVYAKVVDEKK 402


>gi|120600872|ref|YP_965446.1| phage integrase family protein [Shewanella sp. W3-18-1]
 gi|120560965|gb|ABM26892.1| phage integrase family protein [Shewanella sp. W3-18-1]
          Length = 405

 Score = 97.0 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 42/253 (16%), Positives = 83/253 (32%), Gaps = 19/253 (7%)

Query: 93  ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQ 150
            S+    +    +             +   +   K     ++A  +   +R     A R+
Sbjct: 125 RSYHGRAELTFEELDKKFLEGFRKYLLEEPLTKSKSKLAKNTASSYFNKVRAALNEAYRE 184

Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210
             +  NP   V+  K +       T ++++            + AF F   +GLR SD  
Sbjct: 185 GIIRDNPVQRVKSVKAENTQRTYLTLDEVRAMTRAECRYDVLKRAFLFSCTTGLRWSDIQ 244

Query: 211 RAGVQHLQN-----NIFSIKTQK----TGTIITVELPDGFMKLLAMTPIGKETFFINNDK 261
           +   + ++           K  K      +++ ++LPD  +KL+       E  F     
Sbjct: 245 KLTWKEIEEFQDGHYRIIFKQTKLLNAGNSLVYLDLPDSAVKLMGERQDKTERVF----- 299

Query: 262 QKMNATQFSI-WFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           + +  + ++       A  AGV K  + H  R   A    + G   + L    G   +  
Sbjct: 300 KGLKYSSYTNVALLHWAMLAGVQKHVTFHVGRHTFAVAQLNRGVDIYSLSRLLGHSELRT 359

Query: 319 AETYTKGADRIRL 331
            E Y    +  R+
Sbjct: 360 TEIYADILESRRV 372


>gi|29350025|ref|NP_813528.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
 gi|29341937|gb|AAO79722.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
          Length = 420

 Score = 97.0 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 37/228 (16%), Positives = 80/228 (35%), Gaps = 10/228 (4%)

Query: 110 DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
           D +    +    G +    + ++A  + + ++   K A   EY+ ++    V+      +
Sbjct: 182 DIKMFLLRAPMGGNKKGTISQNTASTYFSILKAGLKQAFIDEYLTVDISAKVKGITNIEK 241

Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSI- 224
                T  ++Q       +    + AF F + +GLR SD      + +    +    ++ 
Sbjct: 242 PRVALTMNEVQMLVDTPCKDDVLKRAFLFSILTGLRHSDIQTLKWKQIQQTSKGTWQAVV 301

Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284
             QKT       +    ++L  + P   E            A+  S   K     +G+ K
Sbjct: 302 IQQKTKRPDYKPVIQQALQLCGIRPDDDEALVFEGLTD---ASWISRPLKVWIEASGIKK 358

Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
             + H  R   A++  + G   + + +  G   V   + YT   +  +
Sbjct: 359 HITFHCGRHSYASLLLENGVDIYTIKSLMGHTNVKTTQIYTHIVNEQK 406


>gi|108804749|ref|YP_644686.1| phage integrase [Rubrobacter xylanophilus DSM 9941]
 gi|108765992|gb|ABG04874.1| phage integrase [Rubrobacter xylanophilus DSM 9941]
          Length = 379

 Score = 97.0 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 42/295 (14%), Positives = 90/295 (30%), Gaps = 42/295 (14%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFE-SYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           +   +  + + +  G++   +  +++      I    G+   + +T  H++     +   
Sbjct: 68  VGEYMDRWLRDSVEGNVGPRTLANYKLQVRRHIKPVLGEIQLKTLTPAHVQGLYRQKLDA 127

Query: 130 ---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
              PSS       +      A+R   V  N   +V+ PK  +E +   T E+ ++F    
Sbjct: 128 GLAPSSVRYIHAVLHRALTQALRWGLVPRNVSEAVDLPKLVSEEVDALTPEEARKFLD-A 186

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--------------------FSIKT 226
           + G +    +   + +G+R  +        +                             
Sbjct: 187 ARGDRFEALYVVAVMTGMRRGELLGLRWSDIDLGQNAPATLRVGRQLQRMRDGSGLKFVA 246

Query: 227 QKTGTIITVELPDGFMKLLAM--------------TPIGKETFFINNDKQKMNATQFSIW 272
            K G   T+ LP   ++ L                    +   F +     +  +     
Sbjct: 247 PKGGKGRTIRLPSRAVEALKAHRARQAEERLKAGPLYRDEGLVFASEVGTPLEPSNIDRR 306

Query: 273 -FKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTK 324
            FK    KAG+ +   H +R   AT+    G     +    G   +     TY+ 
Sbjct: 307 SFKPLLKKAGLPDIRFHDLRHTCATVLLSQGVNPKFVQELLGHADIKLTLGTYSH 361


>gi|153930697|ref|YP_001393320.1| shufflon-specific DNA recombinase [Yersinia pseudotuberculosis IP
           31758]
 gi|152958238|gb|ABS45700.1| shufflon-specific DNA recombinase [Yersinia pseudotuberculosis IP
           31758]
          Length = 375

 Score = 97.0 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 41/246 (16%), Positives = 86/246 (34%), Gaps = 16/246 (6%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF-LTSMRVLFKW 146
            VN+   +      +       D  +   + +++   + K   S+ ++  L  +  LFK 
Sbjct: 34  RVNTIKKY-KLSTLLTNNITTVDIAEYRDERLKTVKPNGKTISSNTVRLELALLSHLFKV 92

Query: 147 AV-RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA--FEFLLYSG 203
            +        NP L V +PK      R     + ++   +  E S    A      + + 
Sbjct: 93  GIVEWGIARENPVLLVRKPKASEGRNRRVQPAEHRRLIRYADEHSTGECASIINLAIETA 152

Query: 204 LRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLLA-MTPIGKETFFINND 260
           +R  +      +   L+  +  +   K GT   V L     ++L   +P    + F    
Sbjct: 153 MRQGEILSLQWEYVDLRQGVAHLPETKNGTSRDVPLSAKAREILRKCSPKSSGSVF---- 208

Query: 261 KQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQ 318
                +  F   ++    K+G+ +   H +R    +   ++G     E+ A  G K++  
Sbjct: 209 --SYTSNGFKSAWRCIIIKSGIKDLHFHDLRHEGVSRFVESGRLNIMEVAAISGHKSLSM 266

Query: 319 AETYTK 324
            + YT 
Sbjct: 267 LKRYTH 272


>gi|307711353|ref|ZP_07647773.1| phage integrase family protein [Streptococcus mitis SK321]
 gi|307616869|gb|EFN96049.1| phage integrase family protein [Streptococcus mitis SK321]
          Length = 384

 Score = 97.0 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 61/366 (16%), Positives = 115/366 (31%), Gaps = 57/366 (15%)

Query: 11  VTKERTRHGKIIYYF-------RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63
           + K +T+ G I+YY          G  +R              Y + L            
Sbjct: 3   IHKYKTKKG-ILYYVSFYIGLDAYGKKKRHLKRGFKTKKEAKLYEARLEAGVVAPTVNTD 61

Query: 64  PRKKPTTLKWL----ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119
                 T K L       Y  +    + +  ++  +  +   I    GD    +I+    
Sbjct: 62  KPNPKVTYKELYQEWFKAYVGTVEETT-SSQTKNIYRIHILPI---FGDKFVDQISPLDC 117

Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK-RKTEGIRPWTKED 178
           ++ +  +  T  +  Q  +    +F +A+   Y+  NP  +V  PK +KT     W+ E+
Sbjct: 118 QNFITQKSQTFKNIKQIKSYTSKIFDFAINMNYIDRNPMKNVIMPKIKKTRSDNFWSLEE 177

Query: 179 MQQFKSFWS--EGSQPRLAFEFLLYSGLRCSDSCRAGVQH----------------LQNN 220
           +  F       E  +    F  L +SGLR  +                        +   
Sbjct: 178 LHHFLDIVKETEPFKHFALFRLLAFSGLRKGELYALKWADINFDSNLLNIDKSLGRIDGK 237

Query: 221 IFSIKTQKTGTIITVELPDGFMKLLAMT-----------PIGK--------ETFFINNDK 261
                T+   ++ T+ L D  + ++              P+ K          +  +NDK
Sbjct: 238 AIEKSTKNESSVRTIYLDDETIDIIKQWRNFYLKEQSQFPLTKLNISNEYMFYYISSNDK 297

Query: 262 -QKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
            + ++A   +        K  +   S HG R   AT+ ++ G          G  +    
Sbjct: 298 IEPLHADYINNVLNRIIKKHKLKPISPHGFRHTHATLMSEIGIDPSNTSKRLGHASSQMT 357

Query: 320 -ETYTK 324
            + YT 
Sbjct: 358 LDVYTH 363


>gi|238762306|ref|ZP_04623278.1| Phage integrase [Yersinia kristensenii ATCC 33638]
 gi|238699653|gb|EEP92398.1| Phage integrase [Yersinia kristensenii ATCC 33638]
          Length = 360

 Score = 97.0 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 48/278 (17%), Positives = 92/278 (33%), Gaps = 30/278 (10%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--K 127
           T+   +  Y        LA N+      + + I  K  D    KITT  I   +ES   +
Sbjct: 77  TMDNWLERYEIILQRRKLAANTYKVRAGHINTIRDKFADKVLSKITTLDIAEFLESWVEQ 136

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              + A    + +  +F+ A+    + +NP      PK      R     + +Q+ +  +
Sbjct: 137 GKAAMAGTLRSVLSDVFREAIVAGRIEVNPVTPTRAPKITVMRERL----EYEQYIAIRN 192

Query: 188 EGSQPRLAF----EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
              Q    F    +  L +G R  D  +     +++N   I+  KTG +I + L      
Sbjct: 193 AAEQQPAWFALSMDLALVTGQRREDVVKMKFIDVRDNRLYIEQTKTGAMIAIPLTLTLKS 252

Query: 244 --------LLAMTPIGKETFFINNDKQKMN------ATQFSIWFKAKATKAGV-----NK 284
                   +     + +  F I++  +K +          +  F      +G+       
Sbjct: 253 VGLSLSNIIDRCRQVSRTDFLISSGIRKNSPDGSIHPDGLTKGFVKARRYSGLSFSHSPP 312

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           S H +R   +    +            G K+    + Y
Sbjct: 313 SFHEIR-SLSGRLYEKEYGKEFTRKLLGHKSEKMTDKY 349


>gi|323146135|gb|ADX32374.1| phage integrase [Cronobacter phage ESSI-2]
          Length = 338

 Score = 97.0 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 44/321 (13%), Positives = 88/321 (27%), Gaps = 44/321 (13%)

Query: 29  HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLA 88
            G+RIR  +  +   + AY   +      + ++   +     L  LI+       W  L 
Sbjct: 21  KGKRIRKKFVTKGEAL-AYEKFINAELEDKPWLGEKQDNRR-LSDLINL------WYDLY 72

Query: 89  VNSRISFESY---FDQIIRKSGDFDYRKITTKHIRSGVESR-------------KHTPSS 132
             +             I    GD     IT        E R                P +
Sbjct: 73  GRTLSDSNRMMSKLKAICAGMGDPIASNITAADFSEYREGRLKGEIPDITGRCMPIQPQT 132

Query: 133 AIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG-- 189
                 ++  +F    +   +   NP   +   K   + +      +++    + +E   
Sbjct: 133 VNHEQRNLSAVFGTLKKLGHWQLPNPLAGIPTFKVDEKMVSFLYPAEIKTLLEYLNESNS 192

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP 249
           S   L  +  L +G R S++       +     + +  K   + +V + +     +    
Sbjct: 193 SSVLLVAKICLATGARWSEAENLEGAQVTPYRITYRNTKNKKVRSVPISEKLYNEIPK-- 250

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS----AHGVRKFSATISADAGATAH 305
                       +          F+    KAG++       H +R   A+     G    
Sbjct: 251 ---------KRGRLFTP--CRKTFERVIQKAGIDLPEGQCTHVLRHTFASHFMMNGGNIL 299

Query: 306 ELMATYGWKTVDQAETYTKGA 326
            L    G   +     Y   A
Sbjct: 300 VLKDILGHSDIKMTMIYAHFA 320


>gi|240047536|ref|YP_002960924.1| Tyrosine recombinase xerC [Mycoplasma conjunctivae HRC/581]
 gi|239985108|emb|CAT05101.1| Tyrosine recombinase xerC [Mycoplasma conjunctivae]
          Length = 326

 Score = 97.0 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 35/271 (12%), Positives = 94/271 (34%), Gaps = 16/271 (5%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS- 132
           ++  +  S      +  +   + S  D +++   +    +I T  +R+ + + ++  +S 
Sbjct: 51  IVELFIGSKTLEGCSDKTIKYYISTIDSMVKSI-NKQINEIETNDLRNYLSNYQYKNNSS 109

Query: 133 ---AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
                     +   F W   + Y+  +P   +++ K        ++ E+++  +   +  
Sbjct: 110 KVTIDNIRRILSSFFSWLEDENYIVKSPVRRIKKVKAPITVKETYSDEELEIMRDNVN-N 168

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG-----FMKL 244
            +     + L  +G+R  +  +  ++ +  N         G    +   D        K 
Sbjct: 169 YRDLALIDILASTGMRVGELVKLNIEDVDFNERECIVVGKGNKQRIVYFDARTKIHLKKY 228

Query: 245 LAMTPIGKETFFIN--NDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG 301
           L       ++ F++      +++        +       + K   H  R+  ATI+ D G
Sbjct: 229 LDSRVDKNKSLFVSLKLPYGRISINGIESRLRKIGKDLNIKKVHPHKFRRTLATIAIDKG 288

Query: 302 ATAHELMATYGWKTVDQAETY--TKGADRIR 330
               ++    G + VD    Y   K ++  +
Sbjct: 289 MPIEQVQRLLGHEKVDTTLKYAMVKQSNVKK 319


>gi|9507525|ref|NP_052532.1| shufflon-specific recombinase [Plasmid ColIb-P9]
 gi|132191|sp|P16470|RCI2_ECOLX RecName: Full=Shufflon-specific DNA recombinase
 gi|216411|dbj|BAA14093.1| site-specific recombinase [Plasmid ColIb-P9]
 gi|4512522|dbj|BAA75171.1| shufflon-specific recombinase [Plasmid ColIb-P9]
 gi|70610245|gb|AAZ05392.1| shufflon-specific recombinase [Salmonella enterica]
 gi|321271455|gb|ADW79545.1| IncI1 shufflon-specific DNA recombinase Rci [Escherichia coli]
 gi|321271652|gb|ADW79740.1| IncI1 shufflon-specific DNA recombinase Rci [Salmonella enterica
           subsp. enterica serovar Kentucky]
          Length = 384

 Score = 97.0 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 44/281 (15%), Positives = 91/281 (32%), Gaps = 25/281 (8%)

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI------IRKSGDFDYRKI 114
           + SPR +  +L   + +Y K+               +   +       + +    D    
Sbjct: 1   MPSPRIRKMSLSRALDKYLKTVSVHKKGHQQEFYRSNVIKRYPIALRNMDEITTVDIATY 60

Query: 115 TTKHIRSGVESRKHTPSSAIQF---LTSMRVLFKWA-VRQEYVAINPCLSVERPKRKTEG 170
               + + +  R   P +       L  +  LF  A V       NP   V +PK  +  
Sbjct: 61  RDVRL-AEINPRTGKPITGNTVRLELALLSSLFNIARVEWGTCRTNPVELVRKPKVSSGR 119

Query: 171 IRPWTKEDMQQFKSFWSE-GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQ 227
            R  T  + ++   ++ E      + F   L + +R  +      +H+     +  +   
Sbjct: 120 DRRLTSSEERRLSRYFREKNLMLYVIFHLALETAMRQGEILALRWEHIDLRHGVAHLPET 179

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM--NATQFSIWFKAKATKAGV-NK 284
           K G    V L       L M P       +N         A+ F   ++    +  + + 
Sbjct: 180 KNGHSRDVPLSRRARNFLQMMP-------VNLHGNVFDYTASGFKNAWRIATQRLRIEDL 232

Query: 285 SAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTK 324
             H +R  + +   + G     E+ A  G ++++  + YT 
Sbjct: 233 HFHDLRHEAISRFFELGSLNVMEIAAISGHRSMNMLKRYTH 273


>gi|298250834|ref|ZP_06974638.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
 gi|297548838|gb|EFH82705.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
          Length = 309

 Score = 97.0 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 46/270 (17%), Positives = 86/270 (31%), Gaps = 27/270 (10%)

Query: 85  GSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKHT--PSSAIQFLTSM 140
           G LA +SR ++              D     +   ++ +       T   S+A +     
Sbjct: 27  GQLAPSSRKTYTIDAKHFAHWLAGRDLSLTSLNRDNLVAYRTHLAETYAQSTAARMWAVA 86

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEG-IRPWTKED----MQQFKSFWSEGSQPRLA 195
           R L   AV++  +  NP   V   K   +       +E+    +       + G +    
Sbjct: 87  RRLLDEAVQRGLLLKNPAEGVRGFKTGDDESPHALKREEAKALLDAIDRRTALGKRDNAL 146

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFS----IKTQKTGTIITVELP--------DGFMK 243
              LL +G+R +++    +  L          I+  K       +LP        D    
Sbjct: 147 LMLLLRTGIRRAEAVALTIGDLMMEQGYHIVIIRHGKGKKRGLAKLPVEVRQAIDDYLEA 206

Query: 244 LLAMTPIGKETFFINNDK------QKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATIS 297
           +       +   FI+  K      + ++  Q     K +A   G+  S HG+R    T++
Sbjct: 207 VGRACAAPEAPLFISFRKGDHPQERPLHPNQVGRIVKQRAQVVGIVMSPHGMRASFITLA 266

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGAD 327
            + GA    +      K       Y K  +
Sbjct: 267 FEGGADLALVQDGARHKDPRTTRRYQKRRN 296


>gi|315222639|ref|ZP_07864528.1| site-specific recombinase, phage integrase family [Streptococcus
           anginosus F0211]
 gi|315188325|gb|EFU22051.1| site-specific recombinase, phage integrase family [Streptococcus
           anginosus F0211]
          Length = 322

 Score = 97.0 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 43/280 (15%), Positives = 93/280 (33%), Gaps = 15/280 (5%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----SRKH 128
            LI  +  +      +  +   +ES     + K  D D  KITT  +R  ++        
Sbjct: 46  DLIQLFLAAKRVEGCSNKTVHYYESTIRNAVEKI-DKDVVKITTDDLRMFLDGYQEENNI 104

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           +  +       +   F W   ++Y+  +    + + K        +T E ++  +     
Sbjct: 105 SKVTVDNIRRILSSFFAWLEDEDYIVKSSVRRIHKVKTCKTVKETYTDEALEIMRDECD- 163

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDG----FMK 243
           G +     + L  +G+R  +  +     +   N   +   K      V           K
Sbjct: 164 GLRDLAMIDLLASTGMRVGELVKLNCDDIDFENRECVVLGKGNKQRRVYFDARTKLHLQK 223

Query: 244 LLAMTPIGKETFFINNDKQ--KMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADA 300
            L       E  F++  K   ++  +   I  +    K  ++K   H  R+  AT + D 
Sbjct: 224 YLNSREDSNEALFVSLQKPYNRLLISGVEIRLRNLGEKLNLHKVHPHKFRRTLATTAIDK 283

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
           G    ++    G +++D    Y    ++  +   + + I 
Sbjct: 284 GMPIEQVQQLLGHQSIDTTLQYA-MVNQNNVKQSHRKFIG 322


>gi|300786599|ref|YP_003766890.1| phage integrase family protein [Amycolatopsis mediterranei U32]
 gi|299796113|gb|ADJ46488.1| phage integrase family protein [Amycolatopsis mediterranei U32]
          Length = 326

 Score = 97.0 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 47/298 (15%), Positives = 100/298 (33%), Gaps = 41/298 (13%)

Query: 88  AVNSRISFESYF--------DQIIRKSGDFDYRKITTKHIRSGVESRKHT--PSSAIQFL 137
           + ++  ++             ++ R + D +   +T   +RS   +       SS ++  
Sbjct: 26  SPHTTDAYRRDLAGITTLLVSELGRPAEDLEVADLTGPALRSAFGAFADGHAKSSVLRAW 85

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM-QQFKSFW---------S 187
           ++      + V    +A NP  +V RP+      +P   E+  +Q  S            
Sbjct: 86  STWNQFLTFCVADGLLAGNPMGAVARPRTPALTPKPLRGEETPEQLLSAAAAGSRRARDP 145

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK---TQKTGTIITVELPDGFMKL 244
              +  L     L +GLR ++      + L      ++     K     ++ +     +L
Sbjct: 146 WPERDVLVIALGLVAGLRAAEMRALSARSLVGRAGELRLHVKGKGSRDRSIPVQPVLAEL 205

Query: 245 LAM------------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN------KSA 286
           +                       ++   + +         K+    AG++       + 
Sbjct: 206 IERYRESCRVRFPNVRFSPGSPLLLDRAGEPIGRGALEYLVKSCYRGAGLHDRVPAGANL 265

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
           H +R   AT  A+ GATA E+MA  G  ++  ++ Y +   R +     S R    +D
Sbjct: 266 HALRHTFATRLAEDGATASEIMALLGHASLATSQNYIEATGREQRAAAASNRTYRALD 323


>gi|146329464|ref|YP_001208978.1| site-specific recombinase XerC [Dichelobacter nodosus VCS1703A]
 gi|146232934|gb|ABQ13912.1| site-specific recombinase XerC [Dichelobacter nodosus VCS1703A]
          Length = 302

 Score = 97.0 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 37/269 (13%), Positives = 89/269 (33%), Gaps = 19/269 (7%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVESRKH-TP 130
           +I  +  +  +   L+  +  ++    +Q  R   G+ + +K          + RK   P
Sbjct: 1   MIEAFLHALQYERGLSPQTCTTYRYSLNQAQRYFHGELEQQKANALQSYLNHQRRKRIAP 60

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK-RKTEGIRPWTKEDMQQFKS----F 185
            +  +   ++R  F W  +      NP ++++ PK RK    +  + +++    +     
Sbjct: 61  ITLNRHRAALRTYFSWLKQTRQRLDNPAMALQIPKIRKKTLPKTLSIDEITILLAPPNSE 120

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH---------LQNNIFSIKTQKTGTIITVE 236
                +    FE    +GLR ++      +          +       +    GT   + 
Sbjct: 121 EPLTLRNHALFELAYSAGLRLAELIAINWRDCARLPDELIITGKGGYQRRIFIGTHAKMA 180

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSA 294
           L         +    ++  F++N  ++++           A     N+  + H +R   A
Sbjct: 181 LSKWLNVRAQIAAPEEKALFVSNQGRRIHPRSVEYILHRYAQSRLPNRHITPHMLRHSFA 240

Query: 295 TISADAGATAHELMATYGWKTVDQAETYT 323
                A      +    G + +   + YT
Sbjct: 241 GHMLQACGDIRAVQDLLGHQRISTTQIYT 269


>gi|322435168|ref|YP_004217380.1| integrase family protein [Acidobacterium sp. MP5ACTX9]
 gi|321162895|gb|ADW68600.1| integrase family protein [Acidobacterium sp. MP5ACTX9]
          Length = 311

 Score = 97.0 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 41/271 (15%), Positives = 83/271 (30%), Gaps = 31/271 (11%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFD--YRKITTKHIRSGVESRKHTP---SSAIQFLTS 139
             L  NS  ++     Q        D      T + +   +   +       S  + L+ 
Sbjct: 20  RGLRPNSCEAYGRDLLQFAEFLEKRDGLLVGATQQDVGEFLGQLRGHAVESRSVARKLSG 79

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----------QQFKSFWSEG 189
           ++  +KW +  + V  +P L+V  P       +   + ++           +        
Sbjct: 80  LKGFYKWLLMDKRVRHDPTLNVASPSVWKILPKSMAESEVVGMLERTGVAARAADADGIA 139

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFMKLLAM- 247
            +     E L   GLR  + C   V+ ++      + +  G     V L       LA+ 
Sbjct: 140 LRDHAILELLYAGGLRVGEICALRVEDVRLEDQRAQVRGKGDKERIVPLGRQACDALAIY 199

Query: 248 TPIGKETF------------FINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSAT 295
              G+               F++   + +         +   ++ G + S H +R   AT
Sbjct: 200 LDRGRPGLARGAGAGMRREMFLSVRGRALTRQWVWEMVRG-CSENG-DASPHKLRHSCAT 257

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGA 326
              + GA    +    G   +   + YT  A
Sbjct: 258 HMVEHGADLRSVQTFLGHADIATTQVYTHVA 288


>gi|152993870|ref|YP_001359591.1| phage integrase family site specific recombinase [Sulfurovum sp.
           NBC37-1]
 gi|151425731|dbj|BAF73234.1| site-specific recombinase, phage integrase family [Sulfurovum sp.
           NBC37-1]
          Length = 379

 Score = 97.0 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 50/353 (14%), Positives = 102/353 (28%), Gaps = 35/353 (9%)

Query: 6   RLPPFVTKERTRHGKIIY--YFRKGHGRRIRLPYPHESTFI-----PAYMS-ALTGSTPK 57
           R+   + K     G+IIY   FR   G+   L    +S  +       Y S  +      
Sbjct: 9   RVATGIYKRIDAKGEIIYDINFRDEFGKNKFLKVGRKSDGVTVAYCKQYRSKIINMKYLG 68

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK 117
            +  N  +K   T   +  +Y +   +       +     Y D I    G      IT  
Sbjct: 69  EDVSNIRKKSSITFDDITEDYFEYVKYADFKEP-QSFANRYRDHIKDSLGHLPVESITKN 127

Query: 118 HIRSGVESRKHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCL----------SVERP 164
            I + +   K     P++  +    +   F  A+ +E    NP             + + 
Sbjct: 128 DINNLIMLLKDKNLAPATIDRIRQQVSATFNVAIGKEKCRNNPASVSRVDSSSLMRLNKK 187

Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGS-QPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNI 221
                  R  +K++     S                L +G R  +  +   + +   N  
Sbjct: 188 SINNARERYLSKDEANLLLSELKLRRFDVYFMALLALTTGARAGEILKIQYKDIDLENRY 247

Query: 222 FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA- 280
            ++   K G+   +++      +L          ++    +  +       +     +  
Sbjct: 248 INLVETKNGSSRKIKITSKVYDILNEIEFESPNKYLFAGSKHDHLQAIPNIYSIIVGELF 307

Query: 281 --GVNKS-------AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              ++          H +R   A+  A  G     +    G K ++    Y K
Sbjct: 308 NSELDSRDTKHRVCFHTLRHTFASWLAINGTPIFTIQKLMGHKDINMTLRYAK 360


>gi|134102479|ref|YP_001108140.1| integrase/recombinase [Saccharopolyspora erythraea NRRL 2338]
 gi|133915102|emb|CAM05215.1| integrase/recombinase [Saccharopolyspora erythraea NRRL 2338]
          Length = 325

 Score = 97.0 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 38/287 (13%), Positives = 87/287 (30%), Gaps = 30/287 (10%)

Query: 68  PTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--GDFDYRKIT------TKH 118
           P  +   +  + +       L+ ++  ++      ++     GD + + +        + 
Sbjct: 22  PGPVGAAVDGFERHLKAERGLSAHTVRAYIGDVVSLLDHFCAGDEERKGLNGLGLTVLRE 81

Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
             +   +   + S+  +   S R    WA R E +  +P   +  P  K +       E 
Sbjct: 82  WLAAQHADGASRSTLARRAASARTFTAWAHRAELLPHDPGPRLAAPAPKRKLPTVLRAEQ 141

Query: 179 MQQF--------KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
            +          +       +     E L  +G+R S+ C   +  + +    ++    G
Sbjct: 142 AKSAMSASQAGAEQGDPIALRDHAVVELLYATGVRVSELCGLDLDDVDHERRVVRVIGKG 201

Query: 231 -----TIITVELPDGFMKLLAM------TPIGKETFFINNDKQKMNATQFSIWFKAK--A 277
                    V   D   + ++       T       F+     +++             A
Sbjct: 202 DKERAVPFGVPAEDAVSRWISAGRPELATDASGPALFLGARGGRLDPRAVRRVVHDAVGA 261

Query: 278 TKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
                +   HG+R  +AT   + GA    +    G  T+   + YT 
Sbjct: 262 VSGATDVGPHGLRHSAATHLLEGGADLRSVQELLGHATLATTQLYTH 308


>gi|323973095|gb|EGB68288.1| phage integrase [Escherichia coli TA007]
          Length = 334

 Score = 97.0 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 55/311 (17%), Positives = 107/311 (34%), Gaps = 14/311 (4%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIP-AYMSALTGSTPKREYINSPRKKPTTLKWLISE 77
           G+ +   R    +  R+    +   +  A    +  +  KREYI   R +  TL  L+  
Sbjct: 9   GRYLLDIRPNGRKGKRVRKVFDKKSVAVATERYIMANAEKREYIQGYRDR-RTLNDLLEL 67

Query: 78  Y-RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF 136
           +          A   R    +  +++       D  K+     RS   +    PSSA ++
Sbjct: 68  WWMYHGQHRRKAEEDRKQLRNIINELGADMQAVDLDKLKIIAWRSQKIADGLKPSSANRY 127

Query: 137 LTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195
           +  +  +F    +   + A +P   +         +   +++++        EG   R+A
Sbjct: 128 MNRLSGMFTVLKKIGLWDAEHPVRGISILYVSPREMAFLSQKEVALLLDTL-EGDYWRVA 186

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF 255
               L +G R S++C+   + + +N  +    K G   TV +     + +     G    
Sbjct: 187 L-LCLSTGARWSEACKLRGEQIVHNRVTFLETKNGRKRTVPISQAVCEAIKTKETGN--L 243

Query: 256 FINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKT 315
           F    ++      F +  K         ++AH +R   A+     G     L    G  T
Sbjct: 244 FEVKYRE------FCLMLKRVKPDLPKGQAAHVLRHTFASHFVMNGGNIIALQKILGHAT 297

Query: 316 VDQAETYTKGA 326
           + Q   Y   A
Sbjct: 298 IQQTMAYAHFA 308


>gi|255505939|ref|ZP_05349026.3| integrase/recombinase, phage integrase family [Bryantella
           formatexigens DSM 14469]
 gi|255264981|gb|EET58186.1| integrase/recombinase, phage integrase family [Bryantella
           formatexigens DSM 14469]
          Length = 332

 Score = 97.0 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 38/265 (14%), Positives = 90/265 (33%), Gaps = 15/265 (5%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH----TPSSAIQFLTSMRVL 143
           +  +   + S  ++++R   +   RKI+T+ IR  +   +     +  +      ++   
Sbjct: 71  SARTIQYYSSTVERMLRNI-EQPIRKISTEEIRKYLVDYQKINNCSKVTVDNIRRNISSF 129

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203
           F W   ++Y+  +P   + + K K       + E ++  +      S+     + L  +G
Sbjct: 130 FSWLEEEDYILKSPMKRIHKIKTKQPVKETISDEAIELLRDSCEC-SRDLAMIDLLYSTG 188

Query: 204 LRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDG----FMKLLAMTPIGKETFFIN 258
           +R  +     +  +       I   K      V             L          F++
Sbjct: 189 IRVGELVNLNISDVDFEARECIVFGKGDKERKVYFDAKAKLHLQNYLKTRADDNPALFVS 248

Query: 259 NDKQK--MNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKT 315
            D+    +  +   I  ++   K  + K   H  R+  AT + D G    ++    G   
Sbjct: 249 LDEPHDRLKISGVEIRIRSLGRKLNMEKIHPHKFRRTMATRAIDKGMPIEQVQKILGHSQ 308

Query: 316 VDQAETYTKGADRIRLGIKNSRRIS 340
           +D    Y    ++  +   + + I+
Sbjct: 309 IDTTMQYA-IVNQTNVKTSHQKFIA 332


>gi|242278903|ref|YP_002991032.1| integrase family protein [Desulfovibrio salexigens DSM 2638]
 gi|242121797|gb|ACS79493.1| integrase family protein [Desulfovibrio salexigens DSM 2638]
          Length = 439

 Score = 97.0 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 45/292 (15%), Positives = 95/292 (32%), Gaps = 30/292 (10%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHIRSGVES--R 126
           TLK    +Y +    G +   S      +F+ +I          +IT   +   ++   +
Sbjct: 152 TLKEFADQYVEYCT-GRINPRSVKEKRRHFNTLIAHFTESCFVEEITAFKMNKFLQEVLK 210

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVA-----INPCLSVERPKRKTEGIRPWTKEDMQQ 181
             T +     +  ++  + WA    +V       +P  ++++   +        KED+ +
Sbjct: 211 TKTGNMVNIIMKHLKAAWSWA--GGFVEGFPQNSDPFRNIQKFPEQRHPRYVPPKEDLDK 268

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSI----KTQKTGTIITV 235
                    Q R+  +   Y+G R ++      + +   +N   +    +         +
Sbjct: 269 VFDVAE--GQDRVMLKTFYYTGGRKNEIFSLKWEDVLFDSNQIRLWTNKRKHGNRESNLI 326

Query: 236 ELPDGFMKLL----AMTPIGKETFFINNDKQKMNATQF----SIWFKAKATKAGVNK-SA 286
            +     ++L       P   +  FI   K+     Q       + +    KAGV +   
Sbjct: 327 PMVKELKRILTEWKKACPCESDYVFIEVRKKAPTYGQRYVYRKGFMERHCDKAGVKRFGF 386

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK--GADRIRLGIKNS 336
           HG+R   AT   + G     +      K  +    Y    G DR    ++  
Sbjct: 387 HGIRHLFATTLYNNGQPLAVVQKMMRHKNPNTTVRYLHEMGLDRALEAVEGV 438


>gi|80159790|ref|YP_398534.1| XerC/D family recombinase [Clostridium phage c-st]
 gi|78675380|dbj|BAE47802.1| XerC/D family recombinase [Clostridium phage c-st]
          Length = 317

 Score = 97.0 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 49/285 (17%), Positives = 102/285 (35%), Gaps = 26/285 (9%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES---- 125
           T+K+L ++Y+       L+  +  ++E           D  + +  T+     +      
Sbjct: 23  TMKYL-NKYKIDMSIRELSEKTIYNYEMDLYNWFTYILDKQFNQCITELNEDDIMEFLYF 81

Query: 126 ---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR--PWTKEDMQ 180
              + +      + + S+   +K+  ++  +  NP   ++RP++ T+ +     TK+ ++
Sbjct: 82  CKQQGNNSRRMKRRMASISAFYKFLRKKRIIKENPMEFIDRPRKDTDVVTQTFLTKDQVE 141

Query: 181 QFKSFWSEGSQPRLA--FEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVE 236
           Q K    E    +L       L +  R +       + +   N I S   +K G I+ + 
Sbjct: 142 QIKRKLKEHGDIQLETYVLLSLSTMARVNAISNIKWEQIDFENRIISDVLEKEGKIVDLY 201

Query: 237 LPDGFMKLLAMTP-------IGKETFFINNDKQKMN---ATQFSIWFKAKATKAGVN-KS 285
                 +LL           I  E  FI+   +  +    +  S W K      GV    
Sbjct: 202 FNKEVKELLLQLQSIRKENNIDSEYVFISKYNKGYSNVNTSTLSKWTKKVGEMIGVPTLH 261

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAET-YTKGADRI 329
            H  R   AT+  +AG     + +    + +D  +  Y K   + 
Sbjct: 262 CHDWRHSGATLLKNAGMPIERVSSLLHHEGLDVTKKFYIKEDTQK 306


>gi|297160045|gb|ADI09757.1| putative integrase [Streptomyces bingchenggensis BCW-1]
          Length = 428

 Score = 97.0 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 54/334 (16%), Positives = 110/334 (32%), Gaps = 61/334 (18%)

Query: 57  KREYINSPRKKPT---TLKWLISEYRKSAHWGSLAVNSRISFE-SYFDQIIRKSGDFDYR 112
           +++      KKP    T+K  ++ + ++    ++  N+ + +  +    +I   G     
Sbjct: 61  EKQRDAKTVKKPGKAWTVKAWLTHWVENVAPLAVNDNTMVGYGVAVRKHLIPGLGAHRLD 120

Query: 113 KITTKHIRSGVES---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
           ++  +HI +           P++A Q   + R     AVR+ ++  NP    + PK    
Sbjct: 121 RLKPEHIEAFYAKTQANGSKPATAHQVHRTFRTALNEAVRRGHLGKNPVQLAKAPKTGEY 180

Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ 227
            + P++ +++Q+      +  +    +   L  GLR  +      + +        ++  
Sbjct: 181 EVEPYSVQEVQRLLKAADQH-RNSARWAVALALGLRQGEVLGLKWEDVDLEGGFLVVRRS 239

Query: 228 K------------------------------------TGTIITVELPDGFMKLLAM---- 247
           +                                          V LPD  + LL      
Sbjct: 240 RHRPQYAHGCVEPCGRKAAGYCPQRRRTNPELSTTKSRAGRRAVGLPDQLVDLLRAHLKA 299

Query: 248 -----TPIGK-----ETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATI 296
                T  GK     +  F +   +  +  +    +KA   +A V +   H  R  +AT+
Sbjct: 300 QEVERTEAGKCWEDNDLVFPDEHGRSPSHRRDWTEWKALLAEAKVRDGRLHDARHTAATV 359

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
               G     +M   GW T   A  Y    D +R
Sbjct: 360 LLILGVPERAVMGLMGWSTTAMAARYQHMVDAVR 393


>gi|265763640|ref|ZP_06092208.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_16]
 gi|263256248|gb|EEZ27594.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_16]
          Length = 165

 Score = 96.6 bits (239), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 53/144 (36%), Gaps = 15/144 (10%)

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT----QKTGTIITVELPDGFMKLL--AMT 248
           A+ F  + GLR SD      + +  +    +     QKT   I + L +  +K +     
Sbjct: 17  AYLFSCFCGLRISDIIGLQWKDVFIDNGQYRLAVAMQKTKEPIYLPLSNEALKWMPERGD 76

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHE 306
               +  F          +  +   K  A  AG++K  + H  R   AT+    GA  + 
Sbjct: 77  KTADDHVF-------DLPSGINQLIKPWAKAAGISKRFTFHTARHTFATMMLTLGADLYT 129

Query: 307 LMATYGWKTVDQAETYTKGADRIR 330
           +    G  +V   + Y K  ++ +
Sbjct: 130 VSKLLGHTSVKMTQVYAKIVNKKK 153


>gi|153853140|ref|ZP_01994549.1| hypothetical protein DORLON_00534 [Dorea longicatena DSM 13814]
 gi|149753926|gb|EDM63857.1| hypothetical protein DORLON_00534 [Dorea longicatena DSM 13814]
          Length = 366

 Score = 96.6 bits (239), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 61/370 (16%), Positives = 116/370 (31%), Gaps = 84/370 (22%)

Query: 7   LPPFVTKERTRHGKIIYYFR---KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63
           LPPFV            YFR        R R+ Y ++   I  +   L  + P  +    
Sbjct: 38  LPPFVKD----------YFRAMEPKSSARTRINYAYD---IRVFFHFLMENNPVYKNYTI 84

Query: 64  PRKKPTTLKWL----ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119
            R  P  L+ L    I EY +              ++   D  +  +G+           
Sbjct: 85  DRFTPQDLENLEPVDIEEYLE----------YLKVYKRDEDGELITNGEKGLA------- 127

Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
                          + ++++R  + +  +   +  NP L V+ PK   + I     +++
Sbjct: 128 ---------------RKMSALRSFYGYYFKHRIIQKNPTLLVDMPKLHDKAIIRLDTDEV 172

Query: 180 QQFKSFWSEG--------------SQPR--LAFEFLLYSGLRCSDSCRAGVQHLQ-NNIF 222
                F                  ++ R       LL +G+R S+     ++ +   N  
Sbjct: 173 ALLLDFVESAGEHLTGQALNYYKKTRDRDIAILTLLLGTGIRVSECVGLDIKDVDFKNNG 232

Query: 223 SIKTQKTGTIITVELPDGFMKLLA-----------MTPIGKETFFINNDKQKMNATQFSI 271
            + T+K G  + V   D   + L              P  ++  F++  +++M       
Sbjct: 233 IMVTRKGGNQMVVYFGDEVAEALKNYMAGDREAATPLPGHEQALFLSTQRKRMGVQAVEN 292

Query: 272 WFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK-GAD 327
             K  A +   NK  + H +R    T         + +    G K V+   + Y     +
Sbjct: 293 MVKKYARQVTPNKKITPHKLRSTYGTSLYKETGDIYLVADVLGHKDVNTTKKHYAAIDDN 352

Query: 328 RIRLGIKNSR 337
           R R      +
Sbjct: 353 RRRKAASAVK 362


>gi|313895830|ref|ZP_07829384.1| site-specific recombinase, phage integrase family [Selenomonas sp.
           oral taxon 137 str. F0430]
 gi|312975255|gb|EFR40716.1| site-specific recombinase, phage integrase family [Selenomonas sp.
           oral taxon 137 str. F0430]
          Length = 363

 Score = 96.6 bits (239), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 62/314 (19%), Positives = 113/314 (35%), Gaps = 45/314 (14%)

Query: 57  KREYINSPRKKPT-TLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKI 114
           ++E++    + P+ TL+ L   Y +      +   +  + ES F ++I+   G +   KI
Sbjct: 43  EQEFLRQKTESPSMTLESLYHLYMEDLR-HRIRPTTYSTKESIFSNRILPHLGQYPCDKI 101

Query: 115 TTKHIRSGVE---SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP-KRKTEG 170
           T K IR       + +++P+        +  LF +AV+   + +NP  SV+   K   E 
Sbjct: 102 TPKIIRQWQNLLVADEYSPTYLKMINGQLVSLFNFAVKYYGLYVNPMKSVDTIGKSSAEA 161

Query: 171 IRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT- 229
           ++ WT ++  +F    S     +  F  L ++G+R  +               ++ QK+ 
Sbjct: 162 MQFWTVDEFNRFILTQSSPLH-KTIFMLLFWTGMRVGELLALTYADFDLEKKIVRVQKSY 220

Query: 230 ---------------GTIITVELPDGFM-------KLLAMTPIGKETFFINNDKQKMNAT 267
                          G+   V LP   +       + L         F +     +   T
Sbjct: 221 IRLKGKDLIGPPKTPGSNRVVSLPSFLVDNLMSFFESLKPLDPNARLFIVTRASIRRLHT 280

Query: 268 QFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQ-----AET 321
                    A KAGV     H +R   A+     G    E+    G   ++      A  
Sbjct: 281 G--------AKKAGVKLIRIHDLRHSHASYLIHIGVPIMEVSKRLGHDKIETTLRTYAHL 332

Query: 322 YTKGADRIRLGIKN 335
           Y K  D +   I+N
Sbjct: 333 YPKEHDVVLEAIEN 346


>gi|255011874|ref|ZP_05284000.1| integrase [Bacteroides fragilis 3_1_12]
 gi|313149708|ref|ZP_07811901.1| integrase [Bacteroides fragilis 3_1_12]
 gi|313138475|gb|EFR55835.1| integrase [Bacteroides fragilis 3_1_12]
          Length = 363

 Score = 96.6 bits (239), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 33/251 (13%), Positives = 84/251 (33%), Gaps = 24/251 (9%)

Query: 96  ESYFDQIIRK---SGDFDYRKITTKHIRSGVES-----RKHTPSSAIQFLTSMRVLFKWA 147
             +F++   +     D               +      +K + ++A  +      + + A
Sbjct: 111 RLHFEEFCERKCSFRDLSVSLCEKYRAYILRDKHLTSSKKISHNTASAYFNVFLKMVRLA 170

Query: 148 VRQEYVAINPCLSVERPKRKTE-GIRPWTKEDMQQFKS--FWSEGSQPRLAFEFLLYSGL 204
              + ++ +    ++      +      + +++   +   +      P+    F +++GL
Sbjct: 171 YEDKIISHDYTEIIKPIVWNHDTLKEYLSNDEVNILRQTPYSPYPELPKACL-FSIFTGL 229

Query: 205 RCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINND 260
           R SD      +++     N    I+  KTG +I + L    + +L         F     
Sbjct: 230 RRSDILALRWENIVKRSHNTFIEIQCSKTGVLIRLPLSKPALNVLGKRKEEGIVF----- 284

Query: 261 KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
            Q +  +  ++  +     AG+ K  + H  R   A +  + G   + +      K V  
Sbjct: 285 -QSLTISILNLHVQKWLASAGITKHITFHCFRHTFAMLLQEKGVEIYTISKLLAHKQVSS 343

Query: 319 AETYTKGADRI 329
            + Y K  ++ 
Sbjct: 344 TQIYAKVTNQQ 354


>gi|228986847|ref|ZP_04146975.1| Prophage LambdaBa04, site-specific recombinase, phage integrase
           [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|228772929|gb|EEM21367.1| Prophage LambdaBa04, site-specific recombinase, phage integrase
           [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
          Length = 357

 Score = 96.6 bits (239), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 49/306 (16%), Positives = 96/306 (31%), Gaps = 48/306 (15%)

Query: 84  WGSLAVNSRI-----SFESYFD----QIIRKSGDFDYRKITTKHIRSGVESRKHTP---S 131
           W  L    +      S+E         I+   G    + I    I+      K       
Sbjct: 47  WEKLKPIRKAELKITSYEKDMSLVRLYILPTFGYKKIKSIKPVMIQCYYAELKEKGLSNG 106

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           +        R +FK AV  E +  N    V++P+ +   ++ W+ E+  +F  +  E ++
Sbjct: 107 TISNIHRCFRCIFKHAVEWEIIHNNIMNKVKKPREEQGEMKTWSSEECNRFLHYLKEKNK 166

Query: 192 PRLAFEFL-LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250
               F  L +Y+G+R  +      + +  +   I   K+       L +   K  +    
Sbjct: 167 KYYMFFLLAIYTGMRRGELLALTWKDIDFDNRRILVNKSIVKTEEGLFNAATKTKSSNRS 226

Query: 251 GKETFFINNDKQKMN---ATQFSIW----------------------------FKAKATK 279
              + F+  + Q        +F  W                             K    K
Sbjct: 227 ISISSFVVTELQSYYVYKKKEFFRWGIHLNEEAFIFAGNTIHSPLHIDAPHRFLKDHYKK 286

Query: 280 AGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSR 337
           AGV +   H +R   AT+   AG     +    G  ++    + Y+       +  + + 
Sbjct: 287 AGVPRIRIHDLRHTHATLMLQAGEHPKIVQDRLGHSSIQMTLDKYSHITQ--NMQQQAAE 344

Query: 338 RISSVV 343
              +V+
Sbjct: 345 NFENVI 350


>gi|55980943|ref|YP_144240.1| integrase/recombinase [Thermus thermophilus HB8]
 gi|55772356|dbj|BAD70797.1| integrase/recombinase [Thermus thermophilus HB8]
          Length = 313

 Score = 96.6 bits (239), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 47/243 (19%), Positives = 90/243 (37%), Gaps = 20/243 (8%)

Query: 113 KITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVR-QEYVAINPCLSVERPKRKTEGI 171
             + + +R+ +   +  P     FL ++R  +++    +   A +P   + RPK      
Sbjct: 69  SPSPEAVRALLLRERWAPRRVQGFLAALRSYYRYLREVKGEAASDPTEGIGRPKAGRRLP 128

Query: 172 -RPWTKE---DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS---- 223
             P  +E    ++ F+          LA  FL  +GLR S++     +++     S    
Sbjct: 129 LHPGPEELKRFLEAFREEKEAALLEALAR-FLYGTGLRISEALSLKGRNVVLEGGSPVAV 187

Query: 224 IKTQKTGTIITVELPDGFMKLLAMT--PIGKETFFINNDKQKMNATQFSIW----FKAKA 277
               K      V L     ++L     P G    F  +  ++      + W    F+  A
Sbjct: 188 RVVGKGNKERLVPLSKTAREVLEALGRPQGNVNIFTFSQGRRKGHVPSARWVEAKFREAA 247

Query: 278 TKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIK 334
            +AG++    + H +R   AT+  + G     +    G +++   + Y   A R RL   
Sbjct: 248 LRAGLDPRRFTPHKLRHAYATLLVERGVELDAVKDLLGHESIATTQIYLH-ASRERLREA 306

Query: 335 NSR 337
            SR
Sbjct: 307 ASR 309


>gi|32470244|ref|NP_863468.1| shufflon-specific DNA reconbinase [Salmonella enterica subsp.
           enterica serovar Typhimurium]
 gi|195940258|ref|ZP_03085640.1| shufflon-specific DNA recombinase [Escherichia coli O157:H7 str.
           EC4024]
 gi|299836175|ref|YP_003717744.1| shufflon-specific DNA recombinase [Escherichia coli ETEC 1392/75]
 gi|132190|sp|P10487|RCI1_ECOLX RecName: Full=Shufflon-specific DNA recombinase
 gi|4903104|dbj|BAA77989.1| shufflon-specific DNA recombinase [Plasmid R64]
 gi|20521612|dbj|BAB91676.1| shufflon-specific DNA reconbinase [Salmonella enterica subsp.
           enterica serovar Typhimurium]
 gi|297374524|emb|CBL93603.1| shufflon-specific DNA recombinase [Escherichia coli ETEC 1392/75]
 gi|323133131|gb|ADX20559.1| shufflon-specific DNA reconbinase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|323959213|gb|EGB54879.1| phage integrase [Escherichia coli H489]
          Length = 384

 Score = 96.6 bits (239), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 44/281 (15%), Positives = 91/281 (32%), Gaps = 25/281 (8%)

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI------IRKSGDFDYRKI 114
           + SPR +  +L   + +Y K+               +   +       + +    D    
Sbjct: 1   MPSPRIRKMSLSRALDKYLKTVSVHKKGHQQEFYRSNVIKRYPIALRNMDEITTVDIATY 60

Query: 115 TTKHIRSGVESRKHTPSSAIQF---LTSMRVLFKWA-VRQEYVAINPCLSVERPKRKTEG 170
               + + +  R   P +       L  +  LF  A V       NP   V +PK  +  
Sbjct: 61  RDVRL-AEINPRTGKPITGNTVRLELALLSSLFNIARVEWGTCRTNPVELVRKPKVSSGR 119

Query: 171 IRPWTKEDMQQFKSFWSE-GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQ 227
            R  T  + ++   ++ E      + F   L + +R  +      +H+     +  +   
Sbjct: 120 DRRLTSSEERRLSRYFREKNLMLYVIFHLALETAMRQGEILALRWEHIDLRHGVAHLPET 179

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM--NATQFSIWFKAKATKAGV-NK 284
           K G    V L       L M P       +N         A+ F   ++    +  + + 
Sbjct: 180 KNGHSRDVPLSRRARNFLQMMP-------VNLHGNVFDYTASGFKNAWRIATQRLRIEDL 232

Query: 285 SAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTK 324
             H +R  + +   + G     E+ A  G ++++  + YT 
Sbjct: 233 HFHDLRHEAISRFFELGSLNVMEIAAISGHRSMNMLKRYTH 273


>gi|148256274|ref|YP_001240859.1| putative phage-like integrase [Bradyrhizobium sp. BTAi1]
 gi|146408447|gb|ABQ36953.1| putative phage-like integrase [Bradyrhizobium sp. BTAi1]
          Length = 434

 Score = 96.6 bits (239), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 48/246 (19%), Positives = 93/246 (37%), Gaps = 13/246 (5%)

Query: 102 IIRKSGDFDYRKIT--TKHIRSGVESRKHTPSSAI--QFLTSMRVLFKWAVRQEYVAINP 157
           ++   GD  Y  I    +H   G+  R   PS A       ++  LFKW  R+  + +NP
Sbjct: 178 VLDFDGDEIYALIAEARRHGVPGMARRSAAPSDARGRHMAAALSALFKWLHRERRIKVNP 237

Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFW-SEGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216
            L + +P       R  +  ++++F +   + GS      + LL +G R ++  R     
Sbjct: 238 VLGLSKPPNSPSRRRFLSDAEIKKFWAACTTLGSPFGPMLKLLLLTGQRLNEIARLHDTE 297

Query: 217 LQNNIFSIKTQKTGTII--TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274
           L +    +   +T   +   V L     ++LA       + ++ +   +   + FS    
Sbjct: 298 LTDEAIRLPGSRTKNALPHDVPLSSLAKEVLAEVQRVPNSKYVFSTNGRAPVSGFSKAKS 357

Query: 275 AKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKT---VDQAETYTKG--ADR 328
                  +     H +R+ +AT  A+ G   H + A     +      A  Y +   A+ 
Sbjct: 358 RIDDLLNIEPWVFHDLRRSAATGMAEIGIQPHVIEAILNHISGHKASVAGIYNRAAYANE 417

Query: 329 IRLGIK 334
            R  ++
Sbjct: 418 KREALE 423


>gi|163745808|ref|ZP_02153167.1| site-specific tyrosine recombinase XerC [Oceanibulbus indolifex
           HEL-45]
 gi|161380553|gb|EDQ04963.1| site-specific tyrosine recombinase XerC [Oceanibulbus indolifex
           HEL-45]
          Length = 314

 Score = 96.6 bits (239), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 46/305 (15%), Positives = 88/305 (28%), Gaps = 32/305 (10%)

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII--------RK 105
           S      + SP  +     WL  +    +     A N+  ++     + +          
Sbjct: 2   SAEANPLLISPAARDALQTWLTHQ----SALKGAAENTVTAYRGDVTEFLAFMTLHKGDT 57

Query: 106 SGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162
            G     KIT   +R+ +   +       S  + L++++  ++W   +E       L   
Sbjct: 58  QGLGALAKITISDMRAWMARMRSGGVGSRSVARKLSAVKAFYRWLAEREGFEPTAVLLTR 117

Query: 163 RPKRKTEGIRPWTKEDMQQFKSFWS-------EGSQPRLAFEFLLYSGLRCSDSCRAGVQ 215
            PK + +  RP  ++  +                ++       L   GLR S++      
Sbjct: 118 SPKFQKKLPRPLAEDAARALIDCVETQARAPWVAARDVAVLTMLWGCGLRISEALALKGG 177

Query: 216 HLQNNIFSIKTQKTGTIITVELPDGFMKLL-------AMTPIGKETFFINNDKQKMNATQ 268
                       K G    V +       +                 F       + A  
Sbjct: 178 DAPLPSSLRILGKGGKERVVPVLPAARAAVEDYLAVCPHPQEPHAPLFRAIRGGALGARA 237

Query: 269 FSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            +        + G+  +A  H +R   AT   DAG     +    G  ++   + YT   
Sbjct: 238 VAQVMADARMQLGLPATATPHAMRHSFATHLLDAGGDLRAIQELLGHASLSTTQAYT-AV 296

Query: 327 DRIRL 331
           D  RL
Sbjct: 297 DTARL 301


>gi|148724460|ref|YP_001285426.1| integrase [Cyanophage Syn5]
 gi|145588105|gb|ABP87924.1| integrase [Synechococcus phage Syn5]
          Length = 262

 Score = 96.6 bits (239), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 46/260 (17%), Positives = 87/260 (33%), Gaps = 16/260 (6%)

Query: 70  TLKWLISEYRKSAHWGSL-AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128
           T       Y    HW  L +  +      +   + R   +       T+ + S ++ +  
Sbjct: 3   TFAD-CYRYTFQHHWKRLASAGTTQINYKHITGVSRPIAELSRGAWWTE-LVSHLQDQGL 60

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
            PS+  + L        +  +     +       RPK K +    +T+E+++Q     + 
Sbjct: 61  APSTIHKVLAVATHAVNFTRKAGLHDVTI-PEFSRPKLKAKRRPHFTREEVEQLLGHCAP 119

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248
                 A     Y+GLR  +      +H+Q+N   +   K G    V L    + ++   
Sbjct: 120 NLAE--AVLTAAYTGLRQDELLSLRAEHVQDNGLHVVDSK-GDDRFVPLHPKLITIINRR 176

Query: 249 PIGKETFFINNDKQKM-NATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAH 305
                 F          N  Q    FK   + AG+   K  H +R    T  A+    A+
Sbjct: 177 LTNDRLF-----GDDWLNKDQLYGAFKKARSAAGLSDKKVWHSLRHSFGTFLAETQ-PAN 230

Query: 306 ELMATYGWKTVDQAETYTKG 325
            +    G K++  ++ Y   
Sbjct: 231 VIKDLMGHKSIVTSQIYIHS 250


>gi|293602012|ref|ZP_06684467.1| phage integrase family site-specific recombinase [Achromobacter
           piechaudii ATCC 43553]
 gi|292819542|gb|EFF78568.1| phage integrase family site-specific recombinase [Achromobacter
           piechaudii ATCC 43553]
          Length = 372

 Score = 96.6 bits (239), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 50/293 (17%), Positives = 101/293 (34%), Gaps = 30/293 (10%)

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119
           YI     +  T++  ++ Y K     +   +++         IIR  G +    +  + +
Sbjct: 50  YIQRAPAERMTVEAALTRYLKEVT-PTKRESTQAGEHKKAQVIIRHLGKYSLAALNAEIV 108

Query: 120 RSGVESR---------KHTPSSAIQF---LTSMRVLFKWAVRQEY---VAINPCLSVERP 164
               + R         K  P S       L  +  LF  A++ E+   +  NP  ++ RP
Sbjct: 109 AQFRDMRLAGDPDKKGKLRPRSNNTVRLELALLGHLFTVAIK-EWGIGLPFNPVSNIRRP 167

Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNIF 222
              +   R  T E+  +      + S P         + +G+R S+     ++ +     
Sbjct: 168 APGSGRNRRLTSEEQTRLLQAVDKHSNPMFGWIVRIAVQTGMRLSEIATLRIRQVDIERR 227

Query: 223 SIKTQ--KTGTIITVELPDGFMKLLAMT------PIGKETFFINNDKQK--MNATQFSIW 272
            ++ +  K  +  TV L     ++          P   E  F     +        F   
Sbjct: 228 VVRLEHTKNSSPRTVPLTAEATRVFTEALANPLRPAETELVFFGEPGRDGIRRPYLFDKA 287

Query: 273 FKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +      AG+ +   H +R  + +   +AG +  E+ A  G K++   + YT 
Sbjct: 288 WTDAKRAAGLEDFRFHDLRHEAVSRFVEAGLSDQEVSAISGHKSMQMLKRYTH 340


>gi|302343317|ref|YP_003807846.1| integrase family protein [Desulfarculus baarsii DSM 2075]
 gi|301639930|gb|ADK85252.1| integrase family protein [Desulfarculus baarsii DSM 2075]
          Length = 325

 Score = 96.6 bits (239), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 42/281 (14%), Positives = 85/281 (30%), Gaps = 34/281 (12%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIR----KSGDFDYRKITTKHIRSGVESRKHTPS 131
             Y        +   +R ++     Q+      K G   + ++    +R+ +  R  T +
Sbjct: 18  DRYLAEGA--GVMPRTRQAYARDARQLAEFIAVKRGGKPWGQVDADDVRAWLAERLRTSA 75

Query: 132 SAI--QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF------- 182
            A   + L + R  F++  R   V  NP    + PK + +     + ++           
Sbjct: 76  RATVGRKLAAARAWFEFLRRAGLVESNPARLAQPPKLEKKLPARLSVDEAFHLVDGPNRP 135

Query: 183 -------KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTII 233
                      +   +     E L  SGLR  +        L+ ++    ++  K G   
Sbjct: 136 RPGRRDDAKATARRLRDAAVLELLYSSGLRVGELVALDRPDLRLDLGVARVRQGKGGKER 195

Query: 234 TVEL----PDGFMKLLAMTPIGKETFFI----NNDKQKMNATQFSIWFKAKATKAGVNKS 285
            V +         + LA  P            NN   +++         A      + + 
Sbjct: 196 VVPVGAKAAQALERYLAARPALLAGEAAALFLNNAGGRLSVRGVQKIVAANQDGLAIGRR 255

Query: 286 --AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              H +R   AT   + GA    +    G  ++   + Y  
Sbjct: 256 IGPHALRHAMATHLLEGGADLRSVQEMLGHASLSTTQKYLH 296


>gi|189426739|ref|YP_001953915.1| integrase domain protein SAM domain protein [Geobacter lovleyi SZ]
 gi|189422998|gb|ACD97395.1| integrase domain protein SAM domain protein [Geobacter lovleyi SZ]
          Length = 337

 Score = 96.6 bits (239), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 50/294 (17%), Positives = 106/294 (36%), Gaps = 36/294 (12%)

Query: 73  WLISE----YRKSAHWGSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVESR 126
            LI +    +      G    ++  ++ S+ +  +   +  + D    TT H+++  +  
Sbjct: 33  DLIDQAAEWFALDVANGDARPDTIATYISHLNHWLNWCRVNNIDPGHATTTHLKAFRQEL 92

Query: 127 KHTPSSAIQF---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKT---EGIRPWTKEDMQ 180
             + ++       LT++R  +  AV +  +  NP   V+ P+++T   E I+  T  + +
Sbjct: 93  VQSGAAHATISLKLTTVRRFYDGAVSRGLLEANPVNGVKAPRKRTADAEIIKCLTAGETE 152

Query: 181 QFKSFWSEG-----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTII 233
           +F             + R     +   GLR  + CRA ++ ++  ++   I     G   
Sbjct: 153 RFFEAIPHDHKLKSLRDRAMAALMTLEGLRRIEICRANLEDIEETDSGVRILVHGKGKDG 212

Query: 234 TV-ELPDGFMK----LLAMTPI----GKETFFINNDKQ-----KMNATQFSIWFKAKATK 279
            +    D        L+   P+      E  F++  K      ++     S W      K
Sbjct: 213 YIYPREDTVACIQNYLIQRGPVQSDKDGEPIFVSLSKGDKVRGRITRIGLSKWIDTMLAK 272

Query: 280 AGVNKSA---HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
           AG+ K     H +R     +   A      +  T    ++  A  Y+   +R +
Sbjct: 273 AGITKKGRGCHALRHTCGALLYQATRDVKVVQETLRHASIAMAAKYSHVQERGK 326


>gi|69247698|ref|ZP_00604457.1| Phage integrase [Enterococcus faecium DO]
 gi|257883247|ref|ZP_05662900.1| phage integrase [Enterococcus faecium 1,231,502]
 gi|257891822|ref|ZP_05671475.1| phage integrase [Enterococcus faecium 1,231,410]
 gi|258616941|ref|ZP_05714711.1| phage integrase family site specific recombinase [Enterococcus
           faecium DO]
 gi|260559279|ref|ZP_05831461.1| phage integrase [Enterococcus faecium C68]
 gi|261207244|ref|ZP_05921932.1| phage integrase [Enterococcus faecium TC 6]
 gi|289567468|ref|ZP_06447824.1| phage integrase [Enterococcus faecium D344SRF]
 gi|293562793|ref|ZP_06677267.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium E1162]
 gi|294618145|ref|ZP_06697737.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium E1679]
 gi|314940445|ref|ZP_07847597.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133a04]
 gi|314942379|ref|ZP_07849225.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133C]
 gi|314953889|ref|ZP_07856751.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133A]
 gi|314994453|ref|ZP_07859735.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133B]
 gi|314996983|ref|ZP_07861979.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133a01]
 gi|68194722|gb|EAN09203.1| Phage integrase [Enterococcus faecium DO]
 gi|257818905|gb|EEV46233.1| phage integrase [Enterococcus faecium 1,231,502]
 gi|257828182|gb|EEV54808.1| phage integrase [Enterococcus faecium 1,231,410]
 gi|260074639|gb|EEW62959.1| phage integrase [Enterococcus faecium C68]
 gi|260078459|gb|EEW66162.1| phage integrase [Enterococcus faecium TC 6]
 gi|289160740|gb|EFD08684.1| phage integrase [Enterococcus faecium D344SRF]
 gi|291595575|gb|EFF26876.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium E1679]
 gi|291605230|gb|EFF34690.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium E1162]
 gi|313588906|gb|EFR67751.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133a01]
 gi|313591154|gb|EFR69999.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133B]
 gi|313594138|gb|EFR72983.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133A]
 gi|313598847|gb|EFR77692.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133C]
 gi|313640352|gb|EFS04933.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133a04]
          Length = 392

 Score = 96.6 bits (239), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 56/372 (15%), Positives = 121/372 (32%), Gaps = 66/372 (17%)

Query: 13  KERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           K+ +  G+I +YF+     R      +           +      ++ I +   K + + 
Sbjct: 9   KQISSTGRITWYFQAYRTTR---RGFNSKREAQLAYLEMEKQQRLKKKIVASNDKFSVVG 65

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---- 128
               +Y +S +       +    E     I+R  GD     +T + ++  + + K     
Sbjct: 66  EQWFQYYRSLN--EQKEITYDKREEQLKIIVRWIGDKKLSDLTPECLQELLFTLKECGVN 123

Query: 129 ------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK-----------TEGI 171
                   +S    +  + ++FK+  R+  ++ NP  SV  PK +               
Sbjct: 124 GTNVGYAKNSLQSLIQVLNMIFKYCQRKNLISENPMKSVRMPKYQLTVTDLKEAINNIED 183

Query: 172 RPWTKEDMQQFKSFWSEG--SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-------- 221
           +  T ++++ F ++          + F  L Y+G R S++       +            
Sbjct: 184 KFLTVDELRTFLNYGIVHEELPMSVLFHVLFYTGCRVSEALALQPGDIDFKRNEILFYKQ 243

Query: 222 ---------FSIKTQKT-----GTIITVELPDGFMKLLAMT--------PIGKETFFI-- 257
                    F I+T KT       ++T  + +   +L+            I +ET+    
Sbjct: 244 TAVKGKSKDFRIETTKTVSSARRVLVTPLVMEKLQQLIKALGEMRQHYRFIIEETYLFVY 303

Query: 258 ---NNDKQKMNATQFSIWFKAKATKAGVNKSAHG--VRKFSATISADAGATAHELMATYG 312
              +           +   K    ++G+NK  H    R   A++ A+   +   L    G
Sbjct: 304 LDSSKRGVPYRREYVNDHVKRCVNRSGINKPFHTHLARHTMASLVAEH-CSWEVLKDRLG 362

Query: 313 WKTVDQAETYTK 324
                 ++ Y  
Sbjct: 363 HTDQTTSKIYRH 374


>gi|293374058|ref|ZP_06620397.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|292631019|gb|EFF49658.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
          Length = 418

 Score = 96.6 bits (239), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 36/226 (15%), Positives = 74/226 (32%), Gaps = 11/226 (4%)

Query: 111 YRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170
           +R+      + G +    + ++A  + +  +   K A    Y+ I+    V+  + +   
Sbjct: 183 FRQFIMNAPQGGTKRGTISQNTASTYFSIFKAGLKQAFIDGYLTIDIAAKVKGIQERESR 242

Query: 171 IRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----NNIFSIKT 226
               T E++ +      +    R A    L +G+R  D  +     ++        +   
Sbjct: 243 REYLTIEELNRLAQTPCDPLLKRAALFSAL-TGIRHCDIQKLKWSEVEQFNGGYRLNFTQ 301

Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284
           QKT  +  + + +    L      G+   F                 K     AG++K  
Sbjct: 302 QKTKGVEYMPISEQAYNLCGEQKEGELLVFAGLPDPSWINRP----VKKWVEAAGISKHI 357

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
           + H  R   AT+    G   + +    G   V   + Y K  D  +
Sbjct: 358 TFHCFRHSYATLQLAGGTDIYTVSKMLGHTNVRTTQVYAKVVDEKK 403


>gi|297527277|ref|YP_003669301.1| integrase family protein [Staphylothermus hellenicus DSM 12710]
 gi|297256193|gb|ADI32402.1| integrase family protein [Staphylothermus hellenicus DSM 12710]
          Length = 333

 Score = 96.6 bits (239), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 39/269 (14%), Positives = 92/269 (34%), Gaps = 24/269 (8%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----- 126
           K ++ E+  +      + ++  ++ S     +   G+   R ++ + I      R     
Sbjct: 20  KDILEEFIFALEAAGASEDTVRAYRSAIKDFLEFLGEKPLRNVSLRDIILWRNHRLKNGF 79

Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
            K       ++ T++     +  R   ++ +N  + + R ++    I     +++++   
Sbjct: 80  SKAKTRDKKKWQTTLHYYSMFLNRFFNWLGLN--IRIPRIRKPPRKIHVLNDDEIRKLLK 137

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFM 242
              +    +L    LL +GLR  +     V  +   N   ++ + K      V +    +
Sbjct: 138 SIRDPL-DKLILFILLDTGLRSKELLGIRVSDIDFENRTITVTSTKYDKERKVLVTSRTI 196

Query: 243 KLLAMTP----IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSAT 295
           +L+        +GKE   I      +  +      K    +AG+       H +R   AT
Sbjct: 197 ELIRSWIELKNLGKEDRLI-----PLTYSGLYKRIKRLGKRAGIPVWKIRPHILRHTFAT 251

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTK 324
            +   G +   L    G   +   + Y  
Sbjct: 252 QALKKGLSLPYLQRLLGHSDIKTTQVYLH 280


>gi|300769888|ref|ZP_07079768.1| integrase [Sphingobacterium spiritivorum ATCC 33861]
 gi|300763339|gb|EFK60155.1| integrase [Sphingobacterium spiritivorum ATCC 33861]
          Length = 414

 Score = 96.6 bits (239), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 54/294 (18%), Positives = 101/294 (34%), Gaps = 38/294 (12%)

Query: 68  PTTLKWLISEYR------KSAHWGSLAVNSRISFESYFDQI------IRKSGDFDYRKIT 115
             T + L+S ++      +S      A  +   +++                D D RKI 
Sbjct: 103 AGTARMLVSIFQDHNNKIQSLIGQEYAPGTLERYKTSLKHTVDFLQTRHTIQDIDIRKID 162

Query: 116 TKHIRSG----VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
              I         +RK   ++A++++ + R +    +   ++  +P ++ +   R+ E  
Sbjct: 163 HAFIMDYEFYLRNTRKCNNNTAVKYIKNFRKIINICIANGWLDRDPFVNYKSKIREVERS 222

Query: 172 RPWTKEDMQQFKSFWSEGSQ---PRLAFEFLLYSGLRCSDSCRAGVQHLQ-----NNIFS 223
              T+E++    S      +    R  F F  ++GL   D       H+           
Sbjct: 223 Y-LTQEEVHIIYSRTFATDRLNIVRDIFVFSCFTGLAYIDVRNLTPFHINIGIDGGKWIF 281

Query: 224 IKTQKTGTIITVELPDGFMKLLAMTP-----IGKETFFINNDKQKMNATQFSIWFKAKAT 278
              QKT T   + L    ++++           + T       QKMNA     + K  A 
Sbjct: 282 THRQKTETPSRIPLLPIALEIIRKYEDHPQCSNEGTLLPILSNQKMNA-----YLKEIAD 336

Query: 279 KAGVNK--SAHGVRKFSAT-ISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             G+ K  + H  R   AT I+   G     +    G K +   + Y K  D+ 
Sbjct: 337 ICGIRKELTFHIARHTFATTITLSNGVPIESVSKMLGHKNLRTTQHYAKILDQK 390


>gi|163795284|ref|ZP_02189251.1| probable site-specific integrase/recombinase [alpha proteobacterium
           BAL199]
 gi|159179270|gb|EDP63801.1| probable site-specific integrase/recombinase [alpha proteobacterium
           BAL199]
          Length = 335

 Score = 96.6 bits (239), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 49/303 (16%), Positives = 105/303 (34%), Gaps = 24/303 (7%)

Query: 36  PYPHESTFIPAYMSALTGSTPKRE------YINSPRKKPTTLKWLISEYRKSAHWGSLAV 89
             P   TF     + L     +RE        N       +LK L++ Y  S        
Sbjct: 20  HAPISRTFANRADAQLWARGIEREMDLGTFRTNDGVPADISLKELLARYV-SEVTPRKKG 78

Query: 90  NSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-KHTPSSAIQFLTSMRVLFKWAV 148
           + + ++      ++      + + ++  H+    + R K    +A   L  ++ +   A+
Sbjct: 79  HVQEAYR-ISRLMLSDLAARNLKDLSPAHLARFRDERLKSGTEAARYDLVLIQGVINTAM 137

Query: 149 RQEY---VAINPCLSVERPKRKTEGIRPWTKEDMQQF--KSFWSEGSQPRLAFEFLLYSG 203
            +E+   +  NP   V +PK      R  T  ++     ++    G          + +G
Sbjct: 138 -REWGLDLQQNPVTRVTKPKPVRARERRLTDSELTSIVERAHGRCGGVLLPTILLAIETG 196

Query: 204 LRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK 261
           +R S+       ++       ++   K G   +V L +  +++L   P   +        
Sbjct: 197 MRRSELLSMTWANVALSAGAVTLPDSKNGKPRSVPLTNEAIQILGDLPREADAVL----- 251

Query: 262 QKMNATQFSI-WFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
             ++A   ++ W +   T A  +   H +R  + +   + G    E+    G +T  Q  
Sbjct: 252 -PISANALALGWKRLMRTCAIADLRFHDLRHEAISRFFEMGLNVPEVALISGHRTPSQLF 310

Query: 321 TYT 323
            YT
Sbjct: 311 RYT 313


>gi|260593520|ref|ZP_05858978.1| putative integrase [Prevotella veroralis F0319]
 gi|260534508|gb|EEX17125.1| putative integrase [Prevotella veroralis F0319]
          Length = 385

 Score = 96.6 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 56/322 (17%), Positives = 123/322 (38%), Gaps = 32/322 (9%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWL---ISEYRKSAHWGSLAVNS----RISFES--YFDQ 101
           +T    K  Y+   R  P TL  L   + EY++     +L+  +    + S++S  +F Q
Sbjct: 36  ITAEYLKERYMQQSRPMP-TLTELYQSVCEYKEELQGRTLSKATVRAFKDSYKSFVHFLQ 94

Query: 102 IIRKSGDFDYRKITTKHIRS----GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINP 157
           +  ++ D    ++    +       +   ++  SS    L  +  + + A+++ YV  +P
Sbjct: 95  VRDRA-DCMPTEVDKTLLEDYRLFMLRDLENKESSVGNRLRHLHQVIRKALQERYVREDP 153

Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGV 214
              ++  +  T      T +D+Q+  ++    S     RL F    ++GL  SD  +  +
Sbjct: 154 FELID-IETPTYERNSLTVDDLQKLLAYRPHRSTDNHCRLIFLLGCFTGLAFSDLKKLRM 212

Query: 215 QHL-----QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF 269
             +          S+   KT     V L     ++L +   G++   +   ++    + F
Sbjct: 213 DDVYTFGDGRRYISLCRTKTQNRSIVPLLPIAEEILTIVSDGRKEGLL--FREFPTNSHF 270

Query: 270 SIWFKAKATKAGVN----KSAHGVRKFSATIS-ADAGATAHELMATYGWKTVDQAETYTK 324
           +   +    KAG+      ++H  R   AT    + G     +    G + +   E Y K
Sbjct: 271 NRKIRDIIIKAGLPPHTEANSHTARHTFATTICLENGLPIETVSKMLGHRFISTTELYAK 330

Query: 325 GADRIRLGIKNSRRISSVVDSD 346
              + ++  +    + S +  +
Sbjct: 331 -VSKGKIAREMQPLMGSNITME 351


>gi|257884210|ref|ZP_05663863.1| integrase [Enterococcus faecium 1,231,501]
 gi|257820048|gb|EEV47196.1| integrase [Enterococcus faecium 1,231,501]
          Length = 380

 Score = 96.6 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 53/309 (17%), Positives = 112/309 (36%), Gaps = 40/309 (12%)

Query: 50  ALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGD 108
           AL     + E     ++KP T + +   +       ++  ++ +  E  F + ++ + GD
Sbjct: 48  ALARLQSEYENNLLKKEKPKTYRDVYDLWMTEYK-RTVRGSTLLKTERIFKNHVLEELGD 106

Query: 109 FDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168
               +IT   I+  ++   +   +A + +    ++FK+AVR   +  NP  ++ +PKR+ 
Sbjct: 107 IYISEITPIKIQKLMDKWANKYDTAPKMMNYTGLVFKYAVRFGIIESNPTDAIRKPKRRK 166

Query: 169 EGIRPWTKEDMQQFKSFWSE-----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----- 218
           +        D +Q K F  E       + +  F  L  +G+R  ++     + +      
Sbjct: 167 KATVEEPFYDKKQLKLFLDELYNQPNLKIQAFFRLLAMTGMRKQEAGALEWRDIDFKAKT 226

Query: 219 ----------NNIFSIKTQKT-GTIITVEL----PDGFMKLLAMTPIGKETFFINNDKQK 263
                      N   I T KT G+   + +     D  ++         + + I      
Sbjct: 227 VNIYKAVTRTANGLEIDTTKTVGSSRIISIDQGTLDKLLEWKEAVLPPSDEWLIFGHSSA 286

Query: 264 ------MNATQFSIWF------KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMAT 310
                 M+      W         K  K  + + + HG R   A++  + GA+  E+   
Sbjct: 287 KNPHDIMSLDTSRKWLLNIQDQMDKKQKKKLPRITVHGFRHTQASLLIEMGASLKEVQFR 346

Query: 311 YGWKTVDQA 319
            G + +   
Sbjct: 347 LGHEDIQTT 355


>gi|315023286|gb|EFT36296.1| hypothetical protein RAYM_08905 [Riemerella anatipestifer RA-YM]
 gi|325335153|gb|ADZ11427.1| integrase/recombinase [Riemerella anatipestifer RA-GD]
 gi|329025335|gb|AEB71699.1| DNA breaking-rejoining enzyme [Riemerella phage RAP44]
          Length = 414

 Score = 96.6 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 61/350 (17%), Positives = 117/350 (33%), Gaps = 44/350 (12%)

Query: 19  GKIIY-YFRKGHGRRIRLPYPHE--STFIPAYMSALTGSTPKREYINS---PRKKPTTLK 72
           GK  Y +FR   G  IR+         F      A   +   RE + S   P+     +K
Sbjct: 47  GKDWYVWFRFNGGNPIRVKQGLNQIPEFEERLQEAYAMADVIRERLESGWVPQSAKVRVK 106

Query: 73  --WLISE--YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--- 125
              LI    +       +L+ NS  +F S  +  I    +  Y ++              
Sbjct: 107 RINLIDAVIFGFEEKKKTLSKNSIDNFRSSVNFFIEAVKELKYHRMQVSSFERIQAKEVL 166

Query: 126 ------RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK-RKTEGIRPWTKED 178
                 +  +  +  + L  +R +F   +  +Y+  NP   ++  K  K E   P T E+
Sbjct: 167 EHLKNEKGWSNKTYNKHLGFLRSVFHEILDADYIKSNPFRDIKNLKVLKKEANVPPTNEE 226

Query: 179 MQQFKSFWSEGSQPRLAF-EFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQ--KTGTII 233
           M+   +   +       F   + Y G+R ++  +  V    L N + ++  +  KT    
Sbjct: 227 MKAISNALQDYCFGFYVFCSTIYYCGIRPAELVQMKVSMLDLGNELINLPAEITKTDADR 286

Query: 234 TVELPDGFMKLLAMTPIGKET-----FFINNDKQKMNATQF--------------SIWFK 274
            V + +    L +   +           + N  +     ++               +W K
Sbjct: 287 VVPISENLKSLFSKFDLSNPHNYLFGTCVPNGGRHGIKNRYFEPNEFKVKEDTANKLWRK 346

Query: 275 AKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
                 G++K+ + ++   A     AG     + A +G  T    E Y +
Sbjct: 347 LIKDGLGIDKNMYSLKHKGADDKILAGMPIETIQAIFGHSTQKMTERYAR 396


>gi|313207391|ref|YP_004046568.1| integrase family protein [Riemerella anatipestifer DSM 15868]
 gi|312446707|gb|ADQ83062.1| integrase family protein [Riemerella anatipestifer DSM 15868]
          Length = 385

 Score = 96.6 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 61/350 (17%), Positives = 117/350 (33%), Gaps = 44/350 (12%)

Query: 19  GKIIY-YFRKGHGRRIRLPYPHE--STFIPAYMSALTGSTPKREYINS---PRKKPTTLK 72
           GK  Y +FR   G  IR+         F      A   +   RE + S   P+     +K
Sbjct: 18  GKDWYVWFRFNGGNPIRVKQGLNQIPEFEERLQEAYAMADVIRERLESGWVPQSAKVRVK 77

Query: 73  --WLISE--YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--- 125
              LI    +       +L+ NS  +F S  +  I    +  Y ++              
Sbjct: 78  RINLIDAVIFGFEEKKKTLSKNSIDNFRSSVNFFIEAVKELKYHRMQVSSFERIQAKEVL 137

Query: 126 ------RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK-RKTEGIRPWTKED 178
                 +  +  +  + L  +R +F   +  +Y+  NP   ++  K  K E   P T E+
Sbjct: 138 EHLKNEKGWSNKTYNKHLGFLRSVFHEILDADYIKSNPFRDIKNLKVLKKEANVPPTNEE 197

Query: 179 MQQFKSFWSEGSQPRLAF-EFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQ--KTGTII 233
           M+   +   +       F   + Y G+R ++  +  V    L N + ++  +  KT    
Sbjct: 198 MKAISNALQDYCFGFYVFCSTIYYCGIRPAELVQMKVSMLDLGNELINLPAEITKTDADR 257

Query: 234 TVELPDGFMKLLAMTPIGKET-----FFINNDKQKMNATQF--------------SIWFK 274
            V + +    L +   +           + N  +     ++               +W K
Sbjct: 258 VVPISENLKSLFSKFDLSNPHNYLFGTCVPNGGRHGIKNRYFEPNEFKVKEDTANKLWRK 317

Query: 275 AKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
                 G++K+ + ++   A     AG     + A +G  T    E Y +
Sbjct: 318 LIKDGLGIDKNMYSLKHKGADDKILAGMPIETIQAIFGHSTQKMTERYAR 367


>gi|150402206|ref|YP_001329500.1| phage integrase family protein [Methanococcus maripaludis C7]
 gi|150033236|gb|ABR65349.1| phage integrase family protein [Methanococcus maripaludis C7]
          Length = 282

 Score = 96.6 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 35/255 (13%), Positives = 82/255 (32%), Gaps = 17/255 (6%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLF 144
             L+ ++  S++       +K  +  +R +    +     + K T +S +  L ++   +
Sbjct: 14  TGLSKSTINSYKYGLRTF-QKYANKRWRDVMVNDVILFYTNHKATKNSKMSVLGTVSRFY 72

Query: 145 KWAVRQEYVAINPCLS-VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203
            W + ++Y+  NP    ++  +R+ +     T        S         +   F+L +G
Sbjct: 73  DWGIEEKYLLDNPVKKFLKTLRREKKERNYLTTSQANYLLSNIKRYDY-YVITMFILKTG 131

Query: 204 LRCSDSCRAGVQHLQ-NNIFSIKTQKTGTI-ITVELPDGFMKLLAMTPIGKET------- 254
           +R S+     VQ +  ++  +      G     V         L      +         
Sbjct: 132 VRISELVNLKVQDVDLDSKIAFIGSGKGKKDRYVFFDRDLAFHLREYIKERSYRDPKCDN 191

Query: 255 FFINNDKQKMNATQFSIWFKAKATKAG----VNKSAHGVRKFSATISADAGATAHELMAT 310
            F+   +   +    +  +K    +      +  + H +R   AT   + G     L   
Sbjct: 192 LFLGVYRGHFSQRSLT-LYKEYINEVAPNIHIRITPHILRHTFATSMLERGIDLKSLSLI 250

Query: 311 YGWKTVDQAETYTKG 325
            G + +     Y   
Sbjct: 251 LGHEDLSTTSIYLHK 265


>gi|121997992|ref|YP_001002779.1| tyrosine recombinase XerC [Halorhodospira halophila SL1]
 gi|121589397|gb|ABM61977.1| tyrosine recombinase XerC subunit [Halorhodospira halophila SL1]
          Length = 304

 Score = 96.6 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 39/262 (14%), Positives = 86/262 (32%), Gaps = 22/262 (8%)

Query: 85  GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLT 138
             LA  +R  +    D         G   +  +T   +R+ V  ++       +  + L 
Sbjct: 17  RRLAEPTRRRYRQDLDAFAAFCTDRGLASWAAVTHDVVRAWVAHQRRRGLAGRTLGRQLA 76

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG----SQPRL 194
           ++R  +++ +R+  VA +P   V  P+ +         +++         G    ++   
Sbjct: 77  ALRSFYRFLIREGAVAADPAAEVRPPQTRRRLPGTLDPDEVAGLLDGADPGDPLQARDAA 136

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252
            +E +  SGLR S+     +  L   + +  +   K      V +    ++ L      +
Sbjct: 137 LYELIYSSGLRLSEVIGLNMMDLDRRDGLVRVLRGKGAKDRVVPVGRQALRALDAWLRHR 196

Query: 253 ET--------FFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGA 302
                      F+     ++ A       +  A   GV +    H +R   AT   ++  
Sbjct: 197 PAWASAEETAIFVGRHGGRLGARTVQRRLQRLAHLRGVQRRVHPHMLRHSFATHMLESSG 256

Query: 303 TAHELMATYGWKTVDQAETYTK 324
               +    G   +   + YT 
Sbjct: 257 DLRAIQELLGHADISTTQVYTH 278


>gi|149199670|ref|ZP_01876702.1| Integron integrase; Phage integrase; Phage integrase N-terminal
           SAM-like domain [Lentisphaera araneosa HTCC2155]
 gi|149137187|gb|EDM25608.1| Integron integrase; Phage integrase; Phage integrase N-terminal
           SAM-like domain [Lentisphaera araneosa HTCC2155]
          Length = 424

 Score = 96.6 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 59/410 (14%), Positives = 119/410 (29%), Gaps = 100/410 (24%)

Query: 7   LPPFVTKERTRHGKII-YYFRK----GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYI 61
              F+ K++  + K + YY R         R     P+E + +  YM +L G     +  
Sbjct: 7   FKAFLLKQKGVYVKTVDYYLRWVVQYADFSRKLGRSPYEKSCLDQYMRSLFGRVEDWQIK 66

Query: 62  NSPRKKPTTLKW--------------------------------LISEYRKSAHWGSLAV 89
            +         W                                L+ E+ K+      + 
Sbjct: 67  QAEEAVKYYWYWRGGEESNNSDWKSEEDIKSDRLESRFNEEFDGLLVEFEKAMRLQQKSY 126

Query: 90  NSRISF----ESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFK 145
            +  S+    E Y         + DY +    H+         T + A   L ++ + FK
Sbjct: 127 RTIQSYVTWVERYLAHAKTHYKESDYVRDFLSHLVMRYNVAASTQNQA---LCALVLFFK 183

Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLR 205
           + ++ +   +       R K+        T +++++  S  +   + +L  + +   GLR
Sbjct: 184 YILKCDLGDV---SGSLRSKKDVRLPVVLTVDEVREILS--ASTGKEQLMMKLIYGGGLR 238

Query: 206 CSDSCRAGVQHLQ--NNIFSIKTQKTGTIIT----------------------------- 234
            S+  R  ++ L       +I+  K                                   
Sbjct: 239 KSECLRLRIKDLDFSRGSLNIRDGKGNKDRQTLLSRDLKEQIDCHLNEVRKLFEIDRESE 298

Query: 235 ---VELPDGFMKLLAMTPIGKETFFI---------------NNDKQKMNATQFSIWFKAK 276
              V LP+  +K           F++                  +   +    S + KA 
Sbjct: 299 VAGVFLPNALIKKYPNAGRKWAWFWLFPSEKLSIDPMTSQKTIRRHHNSGQMLSRFLKAT 358

Query: 277 ATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
               G+ K  + H +R   AT   + G     +    G + +   + YT 
Sbjct: 359 CEDLGIKKQCTVHTLRHSFATHLLERGTDLRTIQELLGHEDISTTQIYTH 408


>gi|78357906|ref|YP_389355.1| site-specific recombinase XerD-like [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|78220311|gb|ABB39660.1| Site-specific recombinase XerD-like protein [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 417

 Score = 96.6 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 53/384 (13%), Positives = 111/384 (28%), Gaps = 69/384 (17%)

Query: 10  FVTKERTRHG--KIIYY---FRKGHGRRIRLPYPHESTFI----------PAYMSALTGS 54
           +   +  +HG  K  YY   +++  G+R+       S                 +A TG 
Sbjct: 15  YREHDTRKHGIKKDRYYTIRYQR-SGQRVEEGLGWASEGWTLDKAVATLAKLREAATTGE 73

Query: 55  TPKREYINSPRKKPT---------TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK 105
              R        +           T   +++ Y ++           +        ++  
Sbjct: 74  GETRLQEKRKAAEAQKALKEKKNITFATILAGYLEAGTEKKNTRVLAVQKGYGDKWLLPD 133

Query: 106 SGDFDYRKITTKH---IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA-INPCLSV 161
            G    R++T  H   I+  + +   +  +A   +   R  + WA ++E +   NP   +
Sbjct: 134 LGPLPIRQVTAGHLEQIQKQILAAGRSKQTAAHAIDLFRAAWNWAYKRELIEGRNPVTQM 193

Query: 162 ERPKRKTEGIRPWTKEDMQQFKS-FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-- 218
           ER +      R ++  ++Q        +            ++G R  +        +   
Sbjct: 194 ERIRPDGSRERFFSAAELQSLLGWLHRKDIHTYRITLCAAHTGARLGELAHLTWDRVNLP 253

Query: 219 NNIFSIKTQKTGTIITVELPDGFMKL-------------------LAMTPIG--KETFFI 257
           +   +    K+G   +V +      +                      TP G   +  F+
Sbjct: 254 DRQINFIHTKSGVPRSVPMTPELHDMFSDLLMTMSSAKTSGIPLGTNYTPAGLAGKIVFL 313

Query: 258 NNDKQKM-----------NATQFSIWFKAKA-----TKAGVNKSAHGVRKFSATISADAG 301
              ++               T F     A         A    + H +R  +AT+    G
Sbjct: 314 TKARKPFFKEIEGRLRTDTPTAFRSALSALKLNEGHATAKTKLTFHCLRHTAATLLLSNG 373

Query: 302 ATAHELMATYGWKTVDQAETYTKG 325
                +    GW T+   E Y+  
Sbjct: 374 VDPVTVQNIMGWSTLKMLERYSHA 397


>gi|325981039|ref|YP_004293441.1| integrase family protein [Nitrosomonas sp. AL212]
 gi|325530558|gb|ADZ25279.1| integrase family protein [Nitrosomonas sp. AL212]
          Length = 337

 Score = 96.6 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 45/324 (13%), Positives = 102/324 (31%), Gaps = 29/324 (8%)

Query: 17  RHGKIIY-YFRKGHGRRIR-LPYPHESTFIPAYMSALTGSTPKREYINSPRKKP---TTL 71
           + GK  +  F    G R+R      + T    +   L   + +   +    K+       
Sbjct: 5   KRGKTWWISFTTPSGERVRCSAATEDKTQAQEFHDKLKAESWRVVKLGDKPKRTWDEAAY 64

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT-- 129
           KWL+          +    +     +  + + +        ++T + + +G+   K    
Sbjct: 65  KWLME---------TQDKKTHHDDVAKINWLQQFFRGKYLDELT-RDVIAGIGELKRKET 114

Query: 130 -PSSAIQFLTSMRVLFKWA-VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
             ++A + L  +R + + A +  E++   P   ++  +     +R  +            
Sbjct: 115 SSATANRLLALIRSILRRAALDWEWIDKPPV--IKLYREARRRVRYLSATQATMLIQELP 172

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGFMK 243
           +         F L +GLR S+  +     +              K G  I V L    + 
Sbjct: 173 QHLAD--MVTFSLATGLRRSNVTKLEWSQVDMQRNVAWIHGDQAKAGKPIHVTLNATAIA 230

Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGA 302
           +L            +   + +       W+K    +AG+ +   H +R   A+     G 
Sbjct: 231 VLTRQIGKHPRSVFSYKGKPITQVNTKAWYK-ALKRAGIEDFRWHDLRHTWASWLTQNGV 289

Query: 303 TAHELMATYGWKTVDQAETYTKGA 326
             + +     W++ +    Y   A
Sbjct: 290 PLNVIQEMGAWESAEMVRRYAHLA 313


>gi|253563451|ref|ZP_04840908.1| integrase [Bacteroides sp. 3_2_5]
 gi|251947227|gb|EES87509.1| integrase [Bacteroides sp. 3_2_5]
          Length = 420

 Score = 96.6 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 37/228 (16%), Positives = 80/228 (35%), Gaps = 10/228 (4%)

Query: 110 DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
           D +    +    G +    + ++A  + + ++   K A   EY+ ++    V+      +
Sbjct: 182 DIKMFLLRAPMGGNKKGTISQNTASTYFSILKAGLKQAFIDEYLTVDISAKVKGITNIEK 241

Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSI- 224
                T  ++Q       +    + AF F + +GLR SD      + +    +    ++ 
Sbjct: 242 PRVALTMNEVQMLVGTPCKDDVLKRAFLFSILTGLRHSDIQTLKWKQIQQTSKGTWQAVV 301

Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284
             QKT       +    ++L  + P   E            A+  S   K     +G+ K
Sbjct: 302 IQQKTKRPDYKPVIQQALQLCGIRPDDDEALVFEGLTD---ASWISRPLKVWIEASGIKK 358

Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
             + H  R   A++  + G   + + +  G   V   + YT   +  +
Sbjct: 359 HITFHCGRHSYASLLLENGVDIYTIKSLMGHTNVKTTQIYTHIVNEQK 406


>gi|194433928|ref|ZP_03066200.1| integrase [Shigella dysenteriae 1012]
 gi|194417800|gb|EDX33897.1| integrase [Shigella dysenteriae 1012]
          Length = 336

 Score = 96.6 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 43/276 (15%), Positives = 88/276 (31%), Gaps = 26/276 (9%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--K 127
           T+   I  Y+        + N+  +  +  + I  K G     +ITT+HI   ++     
Sbjct: 53  TMADWIERYKTILIRRKASRNTYKTRVNQLETIKEKLGGVLLTEITTRHIAEFLDLWIEG 112

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK--RKTEGIRPWTKEDMQQFKSF 185
              + A    + +  +F+ A+ +  ++ NP      PK     E ++  T   +++    
Sbjct: 113 GKNTMAGSMRSVLSDMFREAIVEGRISQNPVTPTRAPKIVVTRERLKLKTYNCIREAADQ 172

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
                   LA +  L +G R  D        + ++   I+  KTG +I + L        
Sbjct: 173 LPAWFP--LAMDLALVTGQRREDITNMRFSDIYDDRLHIRQIKTGMMIAIPLSLSLPVAG 230

Query: 246 AMTP--------IGKETFFINNDKQKMN------ATQFSIWFKAKATKAGV-----NKSA 286
                       + +  + I+   +K +          +  F A     G+       + 
Sbjct: 231 LRLGAVVKQCRMVSRGDYLISAGIRKNSPDGSIHPDGLTKKFVAARKLTGILFSENPPTF 290

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           H +R   A                 G  +    + Y
Sbjct: 291 HEIR-SLAGRLYKEICGEEFAQRLLGHTSEKTTKMY 325


>gi|238916936|ref|YP_002930453.1| integrase/recombinase XerC [Eubacterium eligens ATCC 27750]
 gi|238872296|gb|ACR72006.1| integrase/recombinase XerC [Eubacterium eligens ATCC 27750]
          Length = 354

 Score = 96.6 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 52/323 (16%), Positives = 113/323 (34%), Gaps = 55/323 (17%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISF----ESYFDQIIRKSGDF-----------DYRKIT 115
           L    ++Y  S  +      ++I++    + +F+ +I     F           D  KI 
Sbjct: 30  LPDFCTQYFDSLEFNKQ-PRTKIAYAMDIKGFFEFLIECIPKFSSYAMKDFKPSDLEKID 88

Query: 116 TKHIRSGVESRK----------HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165
              I   +   K          ++ S+A + L ++R  +++  R E +++NP + V+ PK
Sbjct: 89  GTDITRYLRHVKLYKKNGRDITNSESAAKRKLCALRRFYEYYCRYEIISLNPTIKVDMPK 148

Query: 166 RKTEGIRPWTKEDMQQFKSFWSEG---------------SQPRLAFEFLLYSGLRCSDSC 210
              + I      ++ +F      G               ++       +L +G+R S+  
Sbjct: 149 IHEKAIIRMEPNEVAEFLDNVESGNKLTKTQLQSHEKLKTRDLALLTLMLGTGIRVSECV 208

Query: 211 RAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLL--------AMTPIGKE--TFFINN 259
              +  +  +   I+  +K G+   V   D   + L         +TP        FI+ 
Sbjct: 209 GLDINDVDFDNDRIRVIRKGGSESFVYFGDEVREALLNYLEERKNLTPDEGHENALFISA 268

Query: 260 DKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVD 317
            K+++      +  K  A      K  + H +R    T         + +    G K V+
Sbjct: 269 KKKRLCVRSVELLVKKYAQTVTTVKHITPHKLRSTYGTNLYQESQDIYLVADVLGHKDVN 328

Query: 318 QA-ETYTKGADRIRLGIKNSRRI 339
              + Y +  +  +   +N  ++
Sbjct: 329 TTRKHYAEIVEENKRSARNIVKL 351


>gi|169633091|ref|YP_001706827.1| putative phage integrase [Acinetobacter baumannii SDF]
 gi|169151883|emb|CAP00727.1| conserved hypothetical protein; putative phage integrase
           [Acinetobacter baumannii]
          Length = 402

 Score = 96.6 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 56/330 (16%), Positives = 110/330 (33%), Gaps = 33/330 (10%)

Query: 49  SALTGSTPKREYINS---PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI-IR 104
            A+T    K+   +    P     T      EY    +       ++  + S  +++ + 
Sbjct: 69  KAVTAKPIKKADASQKTLPASNAPTFAHYAQEYL--YNLSDHKQGTKKKYLSILERLWMP 126

Query: 105 KSGDFDYRKITTKHIRSGVESRK-HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163
              D     IT++ +R+ V  R+  +  +    L  +R +F+ A   E +  NPC  ++ 
Sbjct: 127 LFEDMPINTITSQMLRTAVNGREWSSAKTRNDALIPLRGVFELACDDEVIDKNPCDRLKN 186

Query: 164 PKRKTEGIRPWTKEDMQQF-----KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218
            K + +   P+ + + +       + + S+       F    ++G R S+      Q + 
Sbjct: 187 QKTQEDEPDPFNEMEKEIILNWLKEKYISDYPTVYWYFVVAFWTGCRPSEIIALTWQDVD 246

Query: 219 --NNIFSIK----------TQKTGTIITVELPDGFMKL-----LAMTPIGKETFFINNDK 261
             N    I           T KT     V+L D   +      L      +  F  +   
Sbjct: 247 FLNKQIYINKGRVNGVQQETTKTNKARFVDLNDFAFEAFQQLRLLTYLKYEHVFICDETG 306

Query: 262 QKMNA-TQFSIWFKAKATKAGVNKS-AHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
           ++       S  F A     G+    A+  R   AT+    G     + +  G   V   
Sbjct: 307 KEFTTQKSLSEKFVASLKANGIRYRPAYNTRHTYATVCLMNGLNPVYVASQLGHSLVMLM 366

Query: 320 ETYTK--GADRIRLGIKNSRRISSVVDSDD 347
             Y K   +D+ +  I      + +V +  
Sbjct: 367 MRYAKWINSDKNKEEIAKISNSAKIVPNKK 396


>gi|227496708|ref|ZP_03926983.1| integrase [Actinomyces urogenitalis DSM 15434]
 gi|226833805|gb|EEH66188.1| integrase [Actinomyces urogenitalis DSM 15434]
          Length = 415

 Score = 96.6 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 55/329 (16%), Positives = 114/329 (34%), Gaps = 34/329 (10%)

Query: 40  ESTFIPAY-MSALTGSTPKREYINSPRKKPTTLKWL-ISEYRKSAHWGSLAVNSRISFES 97
             TF+P Y   A      + E + +   +  + +WL   +  ++ +  + +  +  S+ S
Sbjct: 84  SRTFVPPYQRRAEARKKAEEERLQAVTVEQWSQQWLKRLQSGQTRNGKARSSGTITSYRS 143

Query: 98  YFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEY--VA 154
             +  ++   G      +T K +   + +      +    L ++R +F  A+R E   V 
Sbjct: 144 TLNAHVLPALGHVRLADVTRKDVDGLLATVADQSGAWNNVLRTVRAMFGEAIRAEVGGVE 203

Query: 155 INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGV 214
           +NP  + E+P R +E  R    E +        +G    L      +  LR  +      
Sbjct: 204 VNPVRAPEKPVRLSEEGRTLEPEQVAALARAMPDGL--GLTVLLAAWCALRQGEVLGLQR 261

Query: 215 QHLQN------NIFSIKTQ-------------KTGTIITVELPDGFMKLLA------MTP 249
           + ++        +  ++ Q             K   +  V +P   + LLA         
Sbjct: 262 RDVKGLGKDGEAVLQVRRQWNSKTHPPTYTLPKEEKVRDVAIPPTLVPLLAEHLKGMRDK 321

Query: 250 IGKETFFINND--KQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHEL 307
            G+   F +    KQ ++    +  +     +       H +R    +  +++GAT  E 
Sbjct: 322 DGQAPLFRSPRWPKQPLSHQALTRAWDEARRQVVPGFRFHDLRGVGLSYFSESGATVEET 381

Query: 308 MATYGWKTVDQAETYTKGADRIRLGIKNS 336
           M   G   V  A  Y     R +  +  +
Sbjct: 382 MTRGGHSDVKAAMRYQHARMRRQQALAAA 410


>gi|168698235|ref|ZP_02730512.1| phage integrase family protein [Gemmata obscuriglobus UQM 2246]
          Length = 374

 Score = 96.6 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 53/346 (15%), Positives = 110/346 (31%), Gaps = 27/346 (7%)

Query: 17  RHGKIIYYFRKG------HGRRIRL-PYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
           R  K+ Y    G       G + RL   P++         A       R+   +  +   
Sbjct: 3   RPAKVWYRSDIGWWMITLGGEKTRLVQGPNDDHHR---HLAEEKYIELRKLRRTAPEAVG 59

Query: 70  TL-KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128
           +    +I  +   +     A ++    + Y        G+   R++   HI   ++ +  
Sbjct: 60  SRTADVIEAFLHHSRVH-FAADTHRLNKYYCQLFAEACGEVLARELKPYHIDRWIDPKVE 118

Query: 129 ----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
                 ++      +   +F WA  ++ +  NP   ++ PK +    R  T  +  +   
Sbjct: 119 AEEWGETTVYNARKAAGRVFSWAAERKLLPENPIDGMKNPKPRPRQ-RAITDVEFWKM-- 175

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT----GTIITVELPDG 240
             + G   +     L  +G R  +        +Q + + +   KT    G    + L   
Sbjct: 176 HENAGGPLKDLLLALYLTGARPKEVRELTWDQVQEDRWVLIEHKTGKKSGKPRVIYLTGP 235

Query: 241 FMKLL-AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATIS 297
             ++   +   G    F+N +          +       K  + K   A+  R    T +
Sbjct: 236 LKEITGRLRGNGHTHVFLNTEGLPWTMNALRLQVWRIKRKLELPKDVCAYLCRHGFGTRA 295

Query: 298 ADAGATAHELMATYGWKTVDQ-AETYTKGADRIRLGIKNSRRISSV 342
             AG     L    G  + +  ++ Y   AD+ +       RI+ V
Sbjct: 296 ILAGVDGQTLAELMGHTSQEMISKVYVHLADQHQHLKDAVNRINGV 341


>gi|152990189|ref|YP_001355911.1| phage integrase family site specific recombinase [Nitratiruptor sp.
           SB155-2]
 gi|151422050|dbj|BAF69554.1| site-specific recombinase, phage integrase family [Nitratiruptor
           sp. SB155-2]
          Length = 378

 Score = 96.6 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 47/287 (16%), Positives = 98/287 (34%), Gaps = 26/287 (9%)

Query: 57  KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT 116
           + E     ++ P   ++   +Y          + +        D++I    D D   IT 
Sbjct: 67  ELEAELKAKETPKAFRYYAEKYLLLKE----QLKTYDELSKQVDKLIEVF-DKDIDAITR 121

Query: 117 KHIRSG--VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
             I+       R  TP +  ++L  +  +F  A+    +  NP   ++ P    +   P+
Sbjct: 122 GEIKEWSAFALRDKTPKTVRKYLNLLGSIFDTAIEYGVIKDNPARKIKLPVHIEKHKEPF 181

Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK------ 228
           + ++++   S  S   +  LA  F  ++G+R  +        +     +I   K      
Sbjct: 182 SSDEVELLLSTASGWFRNYLAIAF--FTGMRPGEIIALTKDDVNLKRRTINVSKARRYGK 239

Query: 229 --TGTIIT----VELPDGFMKLLAMTPIGKETFFINNDK--QKMNATQFSIWFKAKATKA 280
             T   +     V + D  +  L         +   N K  Q  +A +   ++K    ++
Sbjct: 240 TTTPKTVYSIREVPILDALVPYLMDQIENSSYYLFTNSKGDQFWDAKKLHPYWKEVIEQS 299

Query: 281 GVNKS-AHGVRKFSATISADAG-ATAHELMATYGWK-TVDQAETYTK 324
           G+     +  R    T    +G  +  EL    G K + +    Y +
Sbjct: 300 GLMYREMYATRHTFITAMLKSGYVSVMELAQIVGHKNSTEIMNNYAR 346


>gi|146301334|ref|YP_001195925.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
 gi|146155752|gb|ABQ06606.1| Bacteroides conjugative transposon integrase-like protein
           [Flavobacterium johnsoniae UW101]
          Length = 419

 Score = 96.6 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 48/296 (16%), Positives = 102/296 (34%), Gaps = 27/296 (9%)

Query: 41  STFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD 100
             FI  Y++A+      + +  S +      + L +E+ KS   GSL  +   S  +   
Sbjct: 128 EDFIK-YVAAVAA----KRHNRSSKSIRINWERL-AEFLKSFSNGSLNFSQIDSRMA--- 178

Query: 101 QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
                    D++       + G +    + ++A  +    +   K A    Y+ ++    
Sbjct: 179 --------EDFKLFLLGAPQGGGKKGTISRNTAGTYFAIFKAAVKQAFIDGYLTVDLSSK 230

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--Q 218
           ++    +       T E++    S   E    + A  F   +GLR SD  +   + +  +
Sbjct: 231 IKGIPEEESRREYLTIEELNALASTDCEKDVLKRAALFSALTGLRHSDIQKLRWKEIAVE 290

Query: 219 NNI--FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK 276
           + +       +KT  +  + +    ++L     +  +  F +       +     W    
Sbjct: 291 DGMAKLHFTQKKTKGVEYMPISQQALQLCGEPRLPGQLVFEDLPDPSWISRPLKKWV--- 347

Query: 277 ATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
              AG+ K  + H  R   AT+   +G   + +    G   V   + Y K  D  +
Sbjct: 348 -LSAGIKKNITFHCFRHTFATLQLSSGTDIYTVSKMLGHTNVKTTQIYAKVVDEKK 402


>gi|313157598|gb|EFR57014.1| site-specific recombinase, phage integrase family [Alistipes sp.
           HGB5]
          Length = 405

 Score = 96.6 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 49/288 (17%), Positives = 97/288 (33%), Gaps = 33/288 (11%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS-- 132
            ++Y +   +  +   ++  +            D     + +     G+ +   T     
Sbjct: 134 CNKYHRLLRY--MTEYTKQQYRK---------DDLPL-DMVSYEYIDGLNTFMQTAHQCR 181

Query: 133 ---AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
              A+  L  ++    +A+R E++  NP    +    KT    P TKE++    S     
Sbjct: 182 NNGAVNLLCCLKNFILFAIRNEWIEKNPFQYYKMKIDKTNVKVPLTKEELDILISKEMPN 241

Query: 190 SQ---PRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVELPDGF 241
            +    R  F F   +GL  +D+     +H+  +           +KT  I  V L    
Sbjct: 242 ERLECIRDVFCFCALTGLAFTDADNLQKRHITTDDSGTTWIHKPREKTSVISRVPLLPYP 301

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
           +K+L       E           +  + + + K   T   ++K  + H  R   AT++ +
Sbjct: 302 LKILQKYEHNPELQLKGKLLPIPSNQKMNSYLKEIGTICNIHKNLTTHCARHTFATLAIE 361

Query: 300 AGATAHELMATYGWKTVDQAETYTK--GADRIRLGIKNSRRISSVVDS 345
            G     +    G    +    Y K   A+  R      +RI  V+ +
Sbjct: 362 YGMPIDIIAKILGHTNTNMTRHYAKISEANISR----EMQRIGKVLTA 405


>gi|319788866|ref|YP_004090181.1| integrase family protein [Ruminococcus albus 7]
 gi|315450733|gb|ADU24295.1| integrase family protein [Ruminococcus albus 7]
          Length = 361

 Score = 96.6 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 43/268 (16%), Positives = 95/268 (35%), Gaps = 31/268 (11%)

Query: 88  AVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQ---FLTSMRVL 143
             ++  ++    ++ I+ + G      I T+ I   ++ +     SA      +T M+ +
Sbjct: 79  KDSTASNYRMKIERHILPEFGAKVCASIKTRMISEFIQKKLSQGLSARYVGDIITVMKAM 138

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR-LAFEFLLYS 202
           +++A   EY   N    V  PK+    I   T E+ ++   + +       LA    L++
Sbjct: 139 YRYAA-NEYNITNVIEGVVMPKKAKPEINIMTAEEKRKLVYYINTNHNETTLAVALSLFT 197

Query: 203 GLRCSDSCRAGVQHLQNN--IFSIK-----------TQKTGTIIT----------VELPD 239
           G+R  + C    Q +     +  ++             KT  IIT          + +P+
Sbjct: 198 GMRIGEVCALSWQDIDIEKRVLYVRHTIQRIQNYDGKSKTKIIITEPKSQSSKREIPIPE 257

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISA 298
             + +L       +++ +      +        FK+   + G+   + H +R   A+ + 
Sbjct: 258 CLVPMLTELKRKPDSYVLTGTGTPIEPRTLQYRFKSILNRLGLGSFTYHSLRHKMASEAI 317

Query: 299 DAGATAHELMATYGWKTVDQA-ETYTKG 325
           + G     L    G  +     + Y   
Sbjct: 318 EIGFDVKTLSEILGHSSSQITLDRYVHS 345


>gi|327537427|gb|EGF24153.1| Integrase, integron-type [Rhodopirellula baltica WH47]
          Length = 408

 Score = 96.6 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 46/311 (14%), Positives = 92/311 (29%), Gaps = 62/311 (19%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---- 128
             I E+R+S     LA+ +  S+       +   G          H              
Sbjct: 77  DAIQEFRRSMRRAGLAIATERSYVKKLKAFMADRGLNCLADFDRIHASDVEAHLTDLAVD 136

Query: 129 ---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
              +PS+  Q   S+   F+  +++E       +   R  + +      + E++ Q    
Sbjct: 137 GNVSPSTQNQAFHSLLKFFELVLKREMGK----IEAIRANKNSMAPTVMSPEEVGQVFEG 192

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMK 243
                   +  + L   G+R S++ R  V+ +   N    I+  K      V +PD  ++
Sbjct: 193 LE--GVYLVIAKLLYGCGMRISEAHRLRVKDIDFANKQIEIRQSKGNKSRLVPMPDDLIE 250

Query: 244 LLAMTPIGKETFFINN-------------------------------------------- 259
            L      +E    ++                                            
Sbjct: 251 PLRRFVKTREALHEHDLANGTASVYLPYALDRKYPSAHRELKWQYLFASHRLSRDPRTGR 310

Query: 260 -DKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTV 316
             +  ++A+ F    +    +AG+  + ++H  R   AT     G    ++    G   V
Sbjct: 311 IHRHHLHASTFPTHLRRAVEQAGILKHVTSHTFRHCFATHLLWQGTDIRQIQQLLGHSDV 370

Query: 317 DQAETYTKGAD 327
              E YT   +
Sbjct: 371 KTTEIYTHVRN 381


>gi|326789971|ref|YP_004307792.1| integrase family protein [Clostridium lentocellum DSM 5427]
 gi|326540735|gb|ADZ82594.1| integrase family protein [Clostridium lentocellum DSM 5427]
          Length = 407

 Score = 96.6 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 54/308 (17%), Positives = 90/308 (29%), Gaps = 54/308 (17%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVESRK 127
           TL      +        L   S   +E  +   I+    G      I T HI+S   +  
Sbjct: 82  TLNQWFYTWLFEFRINELKDTSFERYEGIYRNYIKGSALGKRKLVDIRTAHIQSYYNALA 141

Query: 128 HTPSSAIQFL---TSMRVLFKWAVRQEYVAINPCLSVERPK-------RKTEGIRPWTKE 177
               +         +++     AV+Q Y+  N C  V  PK        K   I  +T E
Sbjct: 142 EQGKTTNTIKVLNKTLKTCLNDAVKQGYIVRNYCSLVTMPKCEGAAGTDKDNDITFFTPE 201

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSI--------KTQ 227
           + + F     +  + R+ F   L SGLR  +       ++   NN  S+        K  
Sbjct: 202 EQKTFIGSLEKN-KNRMLFILALGSGLRLGELMALKWDNVDMVNNTLSVTHAISRLSKVG 260

Query: 228 KTGTIIT---------------VELP----DGFMKLLAMTPI----------GKETFFIN 258
           K G+                  + LP        K  A                   F  
Sbjct: 261 KDGSRTWSVLEHDPKTKSSTRIIPLPTKIIKELKKHKAEQDKLILKYGDLYQKNNLVFCT 320

Query: 259 NDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVD 317
           +    ++    +  +      AG+ +K  H +R   AT   +       + +  G   + 
Sbjct: 321 DLGGYLDTRNLTRSYARALANAGIEHKKFHSMRHTYATRLFENDVPIKTVQSLMGHNDIT 380

Query: 318 QAE-TYTK 324
                YT 
Sbjct: 381 TTMNIYTH 388


>gi|94272229|ref|ZP_01292090.1| Phage integrase [delta proteobacterium MLMS-1]
 gi|93450194|gb|EAT01495.1| Phage integrase [delta proteobacterium MLMS-1]
          Length = 398

 Score = 96.6 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 45/285 (15%), Positives = 96/285 (33%), Gaps = 24/285 (8%)

Query: 70  TLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES-RK 127
           T   L++E + +         ++R   E      +   G+     I  + I   ++   +
Sbjct: 91  TFAQLLAEIWERELRHKKSGKDTRRLLEKDC---LPTWGNLPVETIRRREIVLLLDEIEQ 147

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF-KSFW 186
             P    +   ++  LF +A  +  +  +PC  + +   K    R  T ++++   ++  
Sbjct: 148 RAPIVRNRVHGALTRLFNFAAERGIIDDSPCTRIRKLAEKGRK-RVLTDDEIKTLWEALD 206

Query: 187 SEGSQP-------RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVEL 237
            E  QP       +LA   +L +G R  +        +  + ++I     K G    V L
Sbjct: 207 PEQVQPMDSYRLTKLALRLILLTGQRPGEVAGMTWDEIDGDTWNIPASRMKNGDPNDVPL 266

Query: 238 PD-GFMKLLAMTPIGKETFFI---NNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRK 291
                  +     +  ++ F+    +    M+A   S          G  +  + H +R+
Sbjct: 267 TGLALETIEQARQLSGDSPFVFRSTHRDGAMSAHALSRAIATHWQAIGFKERFTPHDLRR 326

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK--GADRIRLGIK 334
              T  A+ G          G +       Y +   A   RL ++
Sbjct: 327 TMRTRLAELGVDDVVAERCLGHRLQGVLAVYNRHDYAMEKRLALE 371


>gi|116049139|ref|YP_792059.1| putative bacteriophage integrase [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|37596415|gb|AAQ94690.1| PA0728 [Pseudomonas phage Pf1]
 gi|115584360|gb|ABJ10375.1| putative bacteriophage integrase [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 338

 Score = 96.6 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 46/313 (14%), Positives = 100/313 (31%), Gaps = 18/313 (5%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEY 78
           G+ +       G+R R  +         + + +     ++   N  ++    L  LI  +
Sbjct: 9   GRWLADVEPIKGKRFRKRF-KTKGEAQRFEAMVRTKHARQREWNPVQQDKRLLSELIERW 67

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQ 135
                    ++ S    ++    I  + GD   ++ TT  + +  +        P S   
Sbjct: 68  Y---ELHGHSITSGRRRKNLLLLIASRLGDPVGQRFTTADLVAFRKRELEEGALPRSINV 124

Query: 136 FLTSMRVLFKWAVRQEYVA-INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ-PR 193
             + ++ +F    R   +   NP   ++  K +   +   +K+ +    S   + S  P 
Sbjct: 125 RYSYLKTVFTELRRLGDIDYPNPLDRLKPLKPQQSVVSFLSKDQVAVLVSALRDYSTFPH 184

Query: 194 LAF--EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251
           LA   E  L +G R S++    +  +++        K+  + +V +       L     G
Sbjct: 185 LALISEVCLATGARWSEAQGLTLPMVRDGSVVFSNTKSKRVRSVPISTDLQARLEKYFAG 244

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATY 311
           +  F             F+   K         +  H +R   A+     G     L    
Sbjct: 245 RNRF-------PSCREAFARMVKRCGIVLPRGQCTHVLRHTFASHFMMNGGNILALKEIL 297

Query: 312 GWKTVDQAETYTK 324
           G  +++    Y  
Sbjct: 298 GHSSLNMTMRYAH 310


>gi|119356400|ref|YP_911044.1| tyrosine recombinase XerC subunit [Chlorobium phaeobacteroides DSM
           266]
 gi|119353749|gb|ABL64620.1| tyrosine recombinase XerC subunit [Chlorobium phaeobacteroides DSM
           266]
          Length = 328

 Score = 96.6 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 42/287 (14%), Positives = 88/287 (30%), Gaps = 42/287 (14%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQI---------IRKSGDFDYRKITTKHIRSGVES--- 125
           Y K++   +++ ++  ++ +  DQ          ++    FD  ++T   +R  +     
Sbjct: 27  YLKTS--KNVSRHTITAYRNDLDQFFSFMQRHLELQHMSLFDPEQVTVASVRLFMGDLLQ 84

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           R   P S  + L S++  +++      +  +    V  P+         T++  ++    
Sbjct: 85  RGLQPKSIARKLASVKSFYRYLQETGVIKSSVLSLVSTPRYPRHVPGFLTEQQTEKIFEQ 144

Query: 186 WSEGS----------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIIT 234
              G           +     E L   GLR S+        +      +K T K      
Sbjct: 145 EDSGLFGSDDTFEFHRDISVLEMLYGCGLRISELIDLCPDDINFLQGYVKITGKGQKQRI 204

Query: 235 VELPDGFMKLLAMTPIGKE---------------TFFINNDKQKMNATQFSIWFKAK--A 277
           V L     + +      +                  F+    +K+         K    +
Sbjct: 205 VPLGTQAAEAVRKYFEVRRNFFRINKLMDEKELNHVFVTKRGKKLYPMLVQRITKKYLMS 264

Query: 278 TKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
                 K+ H +R   AT   + GA    +    G  ++   E YT 
Sbjct: 265 VTEQKEKNPHLLRHTFATHLLNNGADLKSVSEMLGHSSLATTEIYTH 311


>gi|317484015|ref|ZP_07942950.1| phage integrase [Bilophila wadsworthia 3_1_6]
 gi|316924742|gb|EFV45893.1| phage integrase [Bilophila wadsworthia 3_1_6]
          Length = 311

 Score = 96.6 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 39/239 (16%), Positives = 76/239 (31%), Gaps = 23/239 (9%)

Query: 111 YRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170
            +          + ++   PSS      ++R  F+  V      +NP   ++R +   +G
Sbjct: 62  LKAWDIDAYLRHLTNKGLKPSSRNTAAATLRSFFRHLVDSGVCTVNPAAFLKRKRNDGKG 121

Query: 171 I------RPWTKEDMQQ-FKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHL---Q 218
                      ++++++ F      G+  R  + F  L  +GLR  ++      ++   Q
Sbjct: 122 SLPGHLSHSLGRDELERLFAGMEEVGAPFRDIVLFRVLFMTGLRAEEAVSLKWMNVINWQ 181

Query: 219 NNIFSIKTQKTGTIITVELPDGFMKLL-----AMTPIGKETFF--INNDKQKMNATQFSI 271
              +     K      V LP      L       +P  +   F  + +  + ++      
Sbjct: 182 GRWYLDVLGKGSKARRVYLPQKAQAALEELRRHTSPRPEYPIFENLRHRGRPISRHGLYA 241

Query: 272 WFKAK---ATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
             K         G + S H  R    T  A  GA    + A  G   +     Y + A 
Sbjct: 242 LVKKWSSLVISRG-DVSPHWFRHSCFTQLASRGARLESIQALAGHANIQTTMHYNEAAQ 299


>gi|282848850|ref|ZP_06258240.1| site-specific recombinase, phage integrase family [Veillonella
           parvula ATCC 17745]
 gi|282581355|gb|EFB86748.1| site-specific recombinase, phage integrase family [Veillonella
           parvula ATCC 17745]
          Length = 350

 Score = 96.6 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 45/291 (15%), Positives = 95/291 (32%), Gaps = 30/291 (10%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           T   L   Y +      ++ N+++ ++     +         R I+ + I   +   +  
Sbjct: 67  TFIELCELYMREK--IGISENTKLVYQYIIKNLS-VLHQKRVRDISHQMIFKTLSDIEFA 123

Query: 130 PSSAIQFLTSMRVLFKWAVR-QEYVAINPCLSVERPKRKT-EGIRPWTKEDMQQFKSFWS 187
             +    +T ++ +F +A++    +  NP   ++R   KT + +  +T ++M      + 
Sbjct: 124 NRTKNMHITFLKSVFNFAIKPYRIIRSNPVADIKRFTTKTYKSLTTFTIDEMDLLLKTYI 183

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----------------NNIFSIKTQKTGT 231
           +  +         Y+G R  +        +                 NN F +K  KT  
Sbjct: 184 DNKKLYTLLCIARYTGARYGEILALTWLDIDLAYNTIRINKQWSRTSNNTFGVKEPKTRN 243

Query: 232 II-TVELPDGFMKLLAMTPIGKET-FFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGV 289
            I T+ +P     +L        T    N +        ++I           NK+ H  
Sbjct: 244 SIRTLPIPPILSNILLEYKSISNTERLFNINTSSTGNVNYAIRTIV------PNKTIHAF 297

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL-GIKNSRRI 339
           R   AT     G     + +  G         Y   +D +R    ++  +I
Sbjct: 298 RHTYATTLLANGVDIKTVASLLGDNINTVMNVYVHYSDEMRKNAAQDVSKI 348


>gi|237744359|ref|ZP_04574840.1| phage integrase [Fusobacterium sp. 7_1]
 gi|229431588|gb|EEO41800.1| phage integrase [Fusobacterium sp. 7_1]
          Length = 353

 Score = 96.6 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 46/295 (15%), Positives = 100/295 (33%), Gaps = 29/295 (9%)

Query: 71  LKWLISEYRKSAHWGSL--AVNSRISFESYFDQI--IRKSGDFDYRKITTKHIRSGVESR 126
            K  +++Y     +  L     + ++  +  + I         D   I   + ++ +  +
Sbjct: 62  FKVAVNQYL---EFKKLRIKELTYMNMSNILNSITYFDNLLISDITAIQVSNFQNDLL-K 117

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI-RPWTKEDMQQFKSF 185
           K+  SS       +++LF W VR + +A NP   V+R K +T+      T ++  Q    
Sbjct: 118 KYKGSSIRTINAYVKMLFTWCVRYKNLASNPFDMVDRLKLETKKRMDIITVDEFNQIIKQ 177

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----------------NNIFSIKTQKT 229
            +     +L F+ L ++GLR  ++    +  +                         +  
Sbjct: 178 VN-NPDMKLMFKLLFWTGLRIGEARALKIDDIDFNNKTISVTKSYTHLSGKSIITTPKTK 236

Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK-AGVNKSAHG 288
           G+I  +++ D  +  +            +N   + N   +   FK    K  G +   H 
Sbjct: 237 GSIRVIKIDDVLLSEIKDYIDKASYILEDNFIFRFNKASYRYNFKNATIKVLGRDLRVHD 296

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK-GADRIRLGIKNSRRISS 341
           +R   A+   + G     +               Y+    D+    IK   ++ +
Sbjct: 297 LRHSHASFLINNGVDILLISKRLEHSNTAMTLNVYSHLYPDKESEAIKLINKLKA 351


>gi|256826758|ref|YP_003150717.1| site-specific recombinase XerC [Cryptobacterium curtum DSM 15641]
 gi|256582901|gb|ACU94035.1| site-specific recombinase XerC [Cryptobacterium curtum DSM 15641]
          Length = 381

 Score = 96.6 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 50/285 (17%), Positives = 97/285 (34%), Gaps = 23/285 (8%)

Query: 58  REYINSPRKKPTTLK-WLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKIT 115
            E   +      TL+ + + EY  S        ++   +    +  ++   GD     + 
Sbjct: 54  AEAGKADVTCDATLREYALEEYLPSKE-AECKQSTIDGYRCRLENHVLPYLGDIALEDLR 112

Query: 116 TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
           T  IR  ++    + S   +    +  + K A+ ++ +  NPC  +  PK K       T
Sbjct: 113 TATIRRWLDRLDKSQSVKREAYKILDQVCKHAMYRDMMQSNPCDRIRVPKVKRYEPVVLT 172

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK---------- 225
            E    +   + EGS   +A    L  GLR  +     V  +     ++           
Sbjct: 173 AEQAIAYLDHF-EGSSIEIAVLLALGCGLRRGEIAALNVSDINWETGAVIVDDSYVTTSK 231

Query: 226 -----TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280
                T K G   TV +P+  +  L           +  D ++      +  ++ K    
Sbjct: 232 GTIRSTTKNGRARTVHMPESLLARLHKIAPKSGA-LLQWDGRRYRPHSITEAYERKIQSL 290

Query: 281 --GVNKSA-HGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
             G+ +     +R  S T++ D+GA   ++    G  +    E Y
Sbjct: 291 PEGLPRIPLKNLRHTSLTLAYDSGARITDVRDRAGHSSEAVTERY 335


>gi|330470281|ref|YP_004408024.1| integrase family protein [Verrucosispora maris AB-18-032]
 gi|328813252|gb|AEB47424.1| integrase family protein [Verrucosispora maris AB-18-032]
          Length = 412

 Score = 96.6 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 69/380 (18%), Positives = 109/380 (28%), Gaps = 67/380 (17%)

Query: 28  GHGRRIRLPYPHEST-----------FIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76
           G   R+R   P                  A+++ +     K  Y++ P    TT K    
Sbjct: 30  GMRYRVRYIAPDGKEKSQSFPDRKKREAQAFLANVQADILKGTYVD-PDAGRTTFKQYAD 88

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF 136
           E+   A    +    RI +E     +    G      I    IR      + +  S    
Sbjct: 89  EWLA-AATTDILTRDRIEYELRL-HVYPVLGHKPMASIQPATIREWARRIQESGLSVGYR 146

Query: 137 LTS---MRVLFKWAVRQEYVAINP--CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
                 + ++F  AV    +  NP    S+ RPK     + PW+ + +  F+       +
Sbjct: 147 RVLFTDVSMIFNAAVDDRKIVSNPFSAKSIRRPKPAPTRVVPWSVDRLAAFRENLPL--R 204

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQ---------------NNIFSIKTQKTGTIITVE 236
            R+A +     GLR  +        +                  +      K G    V 
Sbjct: 205 YRVAVDLGAGCGLRQGEIFAVSPGDIDPTRPVLHVTRQIKLVRGVLIFAPPKGGKSREVP 264

Query: 237 LPDGFMKLLA-------------------MTPIGKETFFINNDKQKMNATQF-SIWFKAK 276
           LP      L                      P   E +  N     +  + F S  +K  
Sbjct: 265 LPSSVAGRLRKHAQDCQPVAVTLPWGSLTGEPRTVELYLTNPAGTALTRSMFNSGVWKPA 324

Query: 277 ATKAGVNKS----AHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTK----GAD 327
               G+        H +R   A++  DAG +   L A  G         TYT       D
Sbjct: 325 VRATGIPDDRHNGMHVLRHTYASVLLDAGESIKALSAYLGHADPGFTLRTYTHLLPASED 384

Query: 328 RIRLGIKNSRRISSVVDSDD 347
           R R  I   R +      +D
Sbjct: 385 RTRRAID--RALGEDQADND 402


>gi|315644600|ref|ZP_07897732.1| integrase family protein [Paenibacillus vortex V453]
 gi|315280107|gb|EFU43404.1| integrase family protein [Paenibacillus vortex V453]
          Length = 268

 Score = 96.6 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 39/253 (15%), Positives = 92/253 (36%), Gaps = 35/253 (13%)

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           ++ +  +P++  +    +R    + ++Q++V  N   +VE PK++    + +TKE + + 
Sbjct: 11  MDKKGLSPNTVHKHHACIRKALDFGLKQQWVYRNVADAVELPKKERFEGKSYTKEQLNEL 70

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-----NNIFSIKTQ---------- 227
                 G++  +      Y GLR  +  R   +++       NI  ++T           
Sbjct: 71  LQKVK-GTKLEVPVYLASYLGLRREEISRLKWKYVNLEQRNINIVEVRTSAGRNVIIKGP 129

Query: 228 KTG-TIITVELPDGFMKLLAMTPIGKETF--------------FINNDKQKMNATQFSIW 272
           KT  +  T+ + D  +++L      +E                +  ++ +       +  
Sbjct: 130 KTKESRRTLYITDELLEVLLRHRAKQEHLKNILKNEYEDSDYVYTRDNGKPYRVNSVTEQ 189

Query: 273 FKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGAD--R 328
           F        + K   H +R   A+I    G     +    G   +    + YT   D   
Sbjct: 190 FNKFLEDNKLPKIRLHDLRHSFASILYAEGVDLKAISEILGHSDLSTTNKIYTHRFDIVH 249

Query: 329 IRLGIKNSRRISS 341
            +  +  S+ +++
Sbjct: 250 EKTAMAMSKALNA 262


>gi|255326004|ref|ZP_05367092.1| tyrosine recombinase XerC [Rothia mucilaginosa ATCC 25296]
 gi|255296895|gb|EET76224.1| tyrosine recombinase XerC [Rothia mucilaginosa ATCC 25296]
          Length = 358

 Score = 96.6 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 58/299 (19%), Positives = 100/299 (33%), Gaps = 33/299 (11%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGVES- 125
            + ++  + +   +    +  +  S+ S  +       + G      I    IR  + S 
Sbjct: 56  FRPVLDRFERFLRYEKHRSEETIRSYISDLEGFFGYMARRGVRHLDSIDASPIREWLGSL 115

Query: 126 --RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF- 182
             R+   S+  +  +++R  F WA  +E V  NP   +  PKR+       ++E M Q  
Sbjct: 116 HLRQAARSTVARRGSTLRTFFTWAQEEELVHANPTRGMRTPKRENHLPPVLSREQMNQLL 175

Query: 183 ----KSFWSEGSQPRL-----AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTI 232
               +    +    RL       E L  SG+R S+     +Q +     +++   K    
Sbjct: 176 TTLQERRAQDPRDARLLRLEAVVEVLYASGMRISELTGLDLQSVDRANKTVRVLGKGNKE 235

Query: 233 ITVEL-PDGFMKL-----------LAMTPIGKETFFINNDKQKMNATQFSI-WFKAKATK 279
             V L       L           +     G    FI     + NA Q      +   T 
Sbjct: 236 RVVPLGTPALKALNRWVSYGRPQWIPEGAQGVTALFIGPRGGRANARQIREDLTRLLRTV 295

Query: 280 AGVNKS-AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
                S AH +R  +AT   D GA    +    G  ++   + YT      RL    +R
Sbjct: 296 ENTQASGAHVLRHSAATHLVDGGADIRSVQELLGHSSLATTQIYTH-VSMKRLAETYAR 353


>gi|303236540|ref|ZP_07323125.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
 gi|302483288|gb|EFL46298.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
          Length = 418

 Score = 96.6 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 35/208 (16%), Positives = 70/208 (33%), Gaps = 10/208 (4%)

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           + ++A  + +  +   K A    Y+ I+    ++  + +       T +++ +  +   E
Sbjct: 199 SRNTASTYFSIFKAALKQAFVDGYLTIDLSAKIKGIQEQESRREYLTLDELNKLANTPCE 258

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI----FSIKTQKTGTIITVELPDGFMKL 244
               + A  F   +GLR  D  +     +             +KT  +  + + +   KL
Sbjct: 259 RDVLKRAALFSALTGLRHCDIQKLKWDEIAIEGNQAKLLFTQKKTKGVEYMPISEQAFKL 318

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302
                  K+  F         +       +A   KAG+ K  S H  R   AT+    G 
Sbjct: 319 CGEPRQPKQLVFEGLPNPSWISRPL----RAWIEKAGIQKHLSFHCFRHTFATLQLANGT 374

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIR 330
             + +    G   V   + Y K  D  +
Sbjct: 375 DIYTVSKMLGHTNVKTTQVYAKVVDEKK 402


>gi|291531147|emb|CBK96732.1| Site-specific recombinase XerD [Eubacterium siraeum 70/3]
          Length = 305

 Score = 96.6 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 37/271 (13%), Positives = 82/271 (30%), Gaps = 24/271 (8%)

Query: 84  WGSLAVNSRISFESYFDQIIRKSGD-FDYRKITT----------KHIRSGVESRKHTPSS 132
           + + +  + I +           G+  +   +T           +H       +    SS
Sbjct: 21  FRNNSKRTLIWYNENLSAFFNWLGENKNVDSLTVENYKSYCTFLQHDYVKRNGQPLKSSS 80

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEG 189
               + +++  + + + ++ +       ++  K +     P   +++    S +   +  
Sbjct: 81  VNSRVRAIKAFYNYCIEEDLLPDF-SKKLKATKIRKTEKLPLDDDEIHTLVSAFGDSALE 139

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPD----GFMKL 244
            + R     +  SGLR  +     + ++     F I T K      V L +         
Sbjct: 140 ERNRCWVILMCDSGLRRGEIINLQIGNVHLARGFMIVTGKGDKQRFVPLGELSKISLATY 199

Query: 245 LAM---TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADA 300
           +          E  F+N   +K         F+    + G+    AH +R   AT     
Sbjct: 200 IRKYRNEAKESEPVFVNRFGEKCTINTVKQVFQKLKKQTGILRLHAHLLRHTFATNYLVD 259

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRL 331
           G     L    G   +     Y   A+  +L
Sbjct: 260 GGDLETLRLLMGHSDLQVTMMYLHLAENKKL 290


>gi|312193458|ref|YP_003991124.1| integrase [Geobacillus sp. Y4.1MC1]
 gi|311217910|gb|ADP76513.1| integrase family protein [Geobacillus sp. Y4.1MC1]
          Length = 304

 Score = 96.6 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 44/290 (15%), Positives = 90/290 (31%), Gaps = 39/290 (13%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----KHT 129
           ++ EY         + N+ IS+ +  +Q ++         +T+  IR  ++      +  
Sbjct: 1   MLHEYETYLQEKGFSPNTVISYLNDVNQFLKDLHLRPGDYVTSADIRKWIQQMLNPVEGK 60

Query: 130 P---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP---WTKEDMQQFK 183
           P   S+  + L S+R  + WAV + Y+  NP   ++  K   E        T+E+ +   
Sbjct: 61  PLAISTINRRLNSLRSFYAWAVERHYIEQNPMKDIQDLKTADEDHEKIMWLTEEEFEDLL 120

Query: 184 SF-------------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
                            +  + R     L Y+GLR  +     +  L   +  I+    G
Sbjct: 121 HRMRKKPVQSRGVDPEEKYRRDRAVVYLLTYAGLRVEELSNLKLTDLDLEMKRIRIVGKG 180

Query: 231 TII-TVELPDGF-----------MKLLAMTP--IGKETFFINNDKQKMNATQFSIWFKAK 276
             + TV + +              ++    P        F +    K +        ++ 
Sbjct: 181 MKVRTVPISNILLAELEDWLKFRAEMAKKKPHVAASPYVFYSQRSPKFSVRGIQRMIESY 240

Query: 277 ATKAGVNKSAHGVRKFSATISADA-GATAHELMATYGWKTVDQAETYTKG 325
           +       + H  R         A      ++    G   +     Y K 
Sbjct: 241 SLP-NKKLTPHMFRHTFCKWMLKATNNDIEKVRRLAGHSNIATTSRYLKD 289


>gi|254885282|ref|ZP_05257992.1| phage integrase [Bacteroides sp. 4_3_47FAA]
 gi|254838075|gb|EET18384.1| phage integrase [Bacteroides sp. 4_3_47FAA]
          Length = 343

 Score = 96.6 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 40/292 (13%), Positives = 96/292 (32%), Gaps = 45/292 (15%)

Query: 85  GSLAVNSRISFESYFDQIIR--------KSGDFDYRKITTKHIRSGVESRKHTPSSA--- 133
            +++ N+++S+   F  ++              +   I+ + +   ++       +A   
Sbjct: 28  RNMSHNTQMSYRDTFRMLVTFVSGKTNIAIDKLNISDISKEMVLLFLDEFVEKMRNASVS 87

Query: 134 --IQFLTSMRVLFKW--AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---- 185
              Q LT+++   K+      +Y+  + C  + +   K    R  T  D ++ ++     
Sbjct: 88  SRNQRLTAIKSFAKFIAWKCPDYI--DWCHQIRQIPSKKITQRQITYMDREEMEALTEAP 145

Query: 186 -----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGT----- 231
                   G +  +    +  +G R S+     V  +    +  + ++     G      
Sbjct: 146 LSNRNHKYGKRDHIIILLMYNTGARVSEVISIHVGDIVMPKKRGMGTVTLHGKGRHERTC 205

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK------- 284
            +  E  D    L+      +   F+N   + M         K  A     +        
Sbjct: 206 PLWPEFWDLLKPLIEGRKPDEF-LFLNRFNKPMTRYCIYTLIKKYADYISRDYPNLRNKR 264

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIK 334
            S H +R  +AT   ++G   + +    G  ++D    Y +   D+    +K
Sbjct: 265 PSPHTIRHTTATHLLNSGTDINTVRNWLGHASIDTTNIYAEISIDQKIKALK 316


>gi|126661716|ref|ZP_01732715.1| tyrosine type site-specific recombinase [Flavobacteria bacterium
           BAL38]
 gi|126625095|gb|EAZ95784.1| tyrosine type site-specific recombinase [Flavobacteria bacterium
           BAL38]
          Length = 408

 Score = 96.6 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 43/209 (20%), Positives = 86/209 (41%), Gaps = 17/209 (8%)

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---S 187
           +S +++  +++ +  +A+R E +  NP  ++   K K E     T+E+++  ++      
Sbjct: 189 NSVVKYFKNLKTICNYAIRMELIDKNP-FNIYNGKIKVEEATFLTQEELESIENKTFKID 247

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVELPDGFM 242
              + +  F F  Y+G    D+ +   +++  +           QKT T   V +    +
Sbjct: 248 RLERVKDIFLFSCYTGYAPVDAIKLTRKNIIQDTEKTLWIKANRQKTNTKANVPILPPVL 307

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSAT-ISAD 299
           K++       +T       QKMNA     + K  A   G+ K  + +  R   AT ++  
Sbjct: 308 KIINKYQFYGDTLLPKISNQKMNA-----YLKEIADIIGLEKKLTWYVARHTFATTVTLG 362

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADR 328
            G     + A  G  T+ Q + Y K  D+
Sbjct: 363 NGIRIENVSAMLGHTTIKQTQHYAKILDQ 391


>gi|53711947|ref|YP_097939.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|52214812|dbj|BAD47405.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
          Length = 406

 Score = 96.6 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 46/275 (16%), Positives = 100/275 (36%), Gaps = 26/275 (9%)

Query: 90  NSRISFE---SYFDQIIRK---SGDFDYRKITTKHIRSGVESRKH----TPSSAIQFLTS 139
            +   +E    Y ++ I+K     D     +    I       K       +SAI  L +
Sbjct: 132 KTVQRYETTTRYLEEFIKKEYQLSDIALNNLEANFISKFDAFLKIEKGCAQNSAITRLKN 191

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLAF 196
           ++ + + A+  +++  +P  +  R K +       T ++++   +         Q R  F
Sbjct: 192 LKKIIRIALENDWIKKDP-FAYYRFKLEETDPEFLTMDEIKIILAKEFTIKRVEQVRDVF 250

Query: 197 EFLLYSGLRCSDSCRAGVQH-LQNN----IFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251
            F +++GL  SD      +H +++N          QKT  +  + +    + +L      
Sbjct: 251 IFCVFTGLAFSDVKDLSPEHLVKDNKGELWIRKNRQKTKIMCNIPVLPVAVSILEKYKNV 310

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS-ADAGATAHELM 308
            E          ++  + + + K  A   G++K  S H  R   AT      G +   + 
Sbjct: 311 AE--CTGKLLPVLSNQRMNSYLKEIADVCGIHKNLSTHTARHSYATSICLANGVSMENVA 368

Query: 309 ATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343
              G       + Y +  D+     K+ ++++S +
Sbjct: 369 KMLGHADTSITKHYARVLDQN--IFKDMQKVNSCL 401


>gi|293373143|ref|ZP_06619507.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|292631914|gb|EFF50528.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
          Length = 171

 Score = 96.6 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 35/145 (24%), Positives = 57/145 (39%), Gaps = 11/145 (7%)

Query: 195 AFEFLLYSGLRCSDSCRAGVQHL------QNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248
           AF F  ++GLR SD        +      +         KT   +T+ L D   K +   
Sbjct: 13  AFLFSCFTGLRYSDMKALNWSEIHKAADGKTEYIDHIQVKTKDRVTIPLSDETKKWMPKR 72

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHE 306
             G +  F N     + +T   +  K     AG+ K  + H  R  +AT+    GA+ + 
Sbjct: 73  EEGIDNIFHNLT---ITSTTVEVVLKEWMEAAGITKHITYHCSRHTAATMLLTLGASIYV 129

Query: 307 LMATYGWKTVDQAETYTKGADRIRL 331
           +    G K++   E Y K  D+ +L
Sbjct: 130 VSKILGHKSIKMTEIYAKIVDKKKL 154


>gi|251791810|ref|YP_003006531.1| integrase family protein [Dickeya zeae Ech1591]
 gi|247540431|gb|ACT09052.1| integrase family protein [Dickeya zeae Ech1591]
          Length = 379

 Score = 96.6 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 40/234 (17%), Positives = 82/234 (35%), Gaps = 17/234 (7%)

Query: 110 DYRKITTKHIRSGVESRKHT-------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162
           +  ++  +  R  +  +  T        ++   +   +R     A ++  +  NP   V+
Sbjct: 138 EVDQLFLEGFRHYLMHKARTKSGTPLSRNTQSAYFNKLRAALNQAEQERLLPDNPVRRVK 197

Query: 163 RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----Q 218
             + +       T+++++         +  + AF F   +GLR SD  +     L     
Sbjct: 198 AIQGEKNKRVYLTEDEVRALAQAECRYNVLKRAFLFSCCTGLRWSDIHKLTWAELEPFYD 257

Query: 219 NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKAT 278
           +       +KT  +  ++L D  M+L+       E  F        +  + + W    A 
Sbjct: 258 HYRIVFTQKKTSGLQYLDLNDMAMQLMGRPGKATERIFKGLKYSAWHNMELTRW----AL 313

Query: 279 KAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
           +AG+ K  + H  R   A I  + G   + L    G   +   E Y    +  R
Sbjct: 314 QAGITKKVTFHSARHTFAVIQLNRGVDIYALSRLLGHSELRTTEIYADILESRR 367


>gi|218780651|ref|YP_002431969.1| integrase family protein [Desulfatibacillum alkenivorans AK-01]
 gi|218762035|gb|ACL04501.1| integrase family protein [Desulfatibacillum alkenivorans AK-01]
          Length = 408

 Score = 96.6 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 60/375 (16%), Positives = 103/375 (27%), Gaps = 53/375 (14%)

Query: 16  TRHGKIIYY--FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYI-NSPRKKPTTLK 72
            R  ++ Y+  +R   G++ R           A          +   +     ++  T +
Sbjct: 31  KRSKRVRYWITYRLPGGKQRREAVGFSIEDARAAEGKRKAEKKENPRVLKKSPEETMTFE 90

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT----------------T 116
            L   Y        L    R   E   +      G    + IT                 
Sbjct: 91  DLAKWYLALPKVKGLKSFWR--IEMNLNTFNETFGKTKIKNITALDLEKFQVDGLAQGFK 148

Query: 117 KHIRSGVESRKHTPSS-------AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
           K  R   E +K   +S         Q LT  R +   A   + V+        R K    
Sbjct: 149 KRTRGSKEEKKEGGASQPASQAYIDQILTVARTMINRAFDSDIVSGETVKVFRRVKNLQG 208

Query: 170 GI-----RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
           G      R  T ++ ++  +        R       Y+G+R  +        +      I
Sbjct: 209 GNANARDRVLTHDEFERIMANLPA--HARPVIATAYYTGMRSGEIFPLTWDKVDLKERVI 266

Query: 225 KTQ----KTGTIITVELPDGFMKLLAMTPIGKET--FFINNDKQKMNATQFSIWFKAKAT 278
           + +    K      V + +   ++L+  P    T   F+   K+     +        A 
Sbjct: 267 RLEAADTKDKEPRVVPICNELFEVLSGLPRPIHTNNVFL---KKGEPIKKLRNSLSTAAK 323

Query: 279 KAGVNK--------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY-TKGADRI 329
           KA +          + H  R    T    AG     +M   G  T    + Y T  AD  
Sbjct: 324 KANIPFGRKVKNGFTFHDFRHTFNTNMRRAGVPESVIMKITGHSTRAMFDRYNTVDADDA 383

Query: 330 RLGIKNSRRISSVVD 344
           +  +         VD
Sbjct: 384 KNAVNIMSSFLQPVD 398


>gi|293372407|ref|ZP_06618791.1| phage integrase, N-terminal SAM domain protein [Bacteroides ovatus
           SD CMC 3f]
 gi|292632590|gb|EFF51184.1| phage integrase, N-terminal SAM domain protein [Bacteroides ovatus
           SD CMC 3f]
          Length = 330

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 34/282 (12%), Positives = 92/282 (32%), Gaps = 21/282 (7%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129
           L+S +  +      +  +   + +  ++++          ITT  IR+ +    E  + +
Sbjct: 55  LLSSFISAKKIEGCSEKTLAYYRNTIERLLLTL-SVAICHITTSDIRAYLSDYQEEHQSS 113

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
             +           F W   ++Y+A +P   + + K  +      + E ++Q +   +  
Sbjct: 114 KVTIDNMRRIFSSFFAWLEDEDYIAKSPVRRIHKVKTDSLVKEVLSDEQLEQLRDSCT-N 172

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT----QKTGTIITVELPDG----F 241
            +     + L  +G+R  +  +   + +    F  +      K      V          
Sbjct: 173 KRDLALIDILSSTGIRVGELVKLNREDID---FHERQCVVFGKGNKERVVYFNARTKLHL 229

Query: 242 MKLLAMTPIGKETFFINNDKQK--MNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISA 298
            + L          F++       +  +   +  +       + K   H  R+  AT++ 
Sbjct: 230 QQYLDERTDDNPALFVSLHSPHTRLTISGVEVRIRKLGKSLSMPKVHPHKFRRTLATMAI 289

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
           D G    ++    G   +D    Y    ++  + + + + + 
Sbjct: 290 DKGMPIEQVQRLLGHVRIDTTLHYA-IVNQNNVKLAHKKYLG 330


>gi|257062249|ref|YP_003142307.1| integrase family protein [Cyanothece sp. PCC 8802]
 gi|256592509|gb|ACV03359.1| integrase family protein [Cyanothece sp. PCC 8802]
          Length = 316

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 41/251 (16%), Positives = 87/251 (34%), Gaps = 25/251 (9%)

Query: 109 FDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAI-NPCLSVERPK 165
            D+ K+   H  +     K     ++  + L ++R + + A+R + +   +   +V+ P 
Sbjct: 62  LDWAKLRYHHTATIRRELKQRYSATTTNKMLCALRRVLEEALRLDLMEAADYAKAVDLPS 121

Query: 166 RKTEGI---RPWTKEDMQQFKSFWS-----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217
            K +     R  T  +++   S         G +       L  +GLR ++     V+  
Sbjct: 122 VKGKKRLRGRALTALEIEGLMSVCLKDSSVLGVRDLALMGILRGTGLRRAELVALEVKDF 181

Query: 218 --QNNIFSIKTQKTGTIITVELPDGF----MKLLAMTPIGKETFFI------NNDKQKMN 265
                +  ++  K     TV LP+         L +                  +++ +N
Sbjct: 182 TSDGGVLEVRGGKGDKDRTVYLPESVIGLVEDWLEVRGAFSGALLCPIRKGGRVEQRHLN 241

Query: 266 ATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY-T 323
                   K +A +AG+   S H  R+   +   DAG     +    G  + +    Y  
Sbjct: 242 PDAVLKIVKKRALEAGIESFSPHDFRRTFCSDLLDAGVDLVTVQKLAGHASPETTAKYDR 301

Query: 324 KGADRIRLGIK 334
           +G +  R  ++
Sbjct: 302 RGEETKRRAVQ 312


>gi|301309845|ref|ZP_07215784.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           20_3]
 gi|300831419|gb|EFK62050.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           20_3]
          Length = 311

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 47/284 (16%), Positives = 102/284 (35%), Gaps = 36/284 (12%)

Query: 90  NSRISFESYFDQIIRKSG--DFDYRKITTKH---IRSGVESRKHTPSSAIQFLTSMRVLF 144
           ++  S++   +      G     Y  I        +S +  +  + ++   ++  +R ++
Sbjct: 25  STAKSYQDALNSFKCFCGMEAIPYAYINRNRLLCYQSWLLDKGRSLNTVSTYMRRIRHIY 84

Query: 145 KWAVRQEYVAINP------CLSVERPKRKTEGIRPWTKEDMQQ-FKSFWSEGSQPRLAFE 197
             AV        P         VE  ++K        +E +++ F +   + S  R+   
Sbjct: 85  NLAVEANEAPFVPNLFKDVFTGVESKRKK-----ALPREMLERMFNAELEDQSLRRVQLT 139

Query: 198 FLL---YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG----FMKLLAMTPI 250
             L   +SG+   D      +++++ I     QK+G++I +E+P G      +L A T  
Sbjct: 140 VRLMFAFSGIAFVDLAHLKWENIRDGILQYHRQKSGSLIQLEIPSGALRLLEELSACTAK 199

Query: 251 GKETFFINNDKQK----------MNATQFSIWFKAKATKAG--VNKSAHGVRKFSATISA 298
                F     ++             ++F+   K  A   G  +  +++ +R   A+   
Sbjct: 200 ESLYLFPFLSGRRTGEAAYKEYNRTLSRFNREMKLLARSTGVTLPVTSYTIRHSFASFLK 259

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
           +   +   +    G K++   + Y K     RL   N     SV
Sbjct: 260 EQDVSIEVISELLGHKSIKTTQIYLKSFSLERLSTVNRNCFESV 303


>gi|291544270|emb|CBL17379.1| Site-specific recombinase XerD [Ruminococcus sp. 18P13]
          Length = 397

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 46/299 (15%), Positives = 97/299 (32%), Gaps = 49/299 (16%)

Query: 71  LKWL--ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG----VE 124
           L WL  I +  +   +G+ ++  +                   R+I  KHI+      + 
Sbjct: 83  LDWLEMIKKNVEETTYGAYSMGIK---SKIIPYFEEHHPGLLLREIKPKHIQDYYTYELT 139

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
            R  + ++ I    ++R   + A +   +  NP   +ERPK++      + ++++ +   
Sbjct: 140 VRGVSANTVIHRHANIRKALQHAFKLGLIDTNPADRIERPKKEKFVGSAYEEDELNRLFE 199

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-----------------NNIFSI--- 224
               G    L      + GLR S++       +                  +    I   
Sbjct: 200 VVK-GDPIELGVILGAFYGLRRSEAVGLKWDAIDFKKKTITIRHTVTQATIDGKSKIIQK 258

Query: 225 -KTQKTGTIITVELPDGFMKLLAMTPIGKE----------------TFFINNDKQKMNAT 267
            +T+   +  ++ L   F +LL      +E                  ++N   + +   
Sbjct: 259 DRTKTKASYRSLPLVPPFEELLYRLKAEQELNRKLCGRSYCRQYTDYIYVNEIGELVKPG 318

Query: 268 QFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTK 324
             +  F     K G+ K   H +R   A++    G +  E+    G   +      YT 
Sbjct: 319 YITQHFPLVLEKNGMRKIRFHDLRHSCASLLYANGVSLKEIQEWLGHSDISTTSNIYTH 377


>gi|300773739|ref|ZP_07083608.1| tyrosine recombinase XerC [Sphingobacterium spiritivorum ATCC
           33861]
 gi|300759910|gb|EFK56737.1| tyrosine recombinase XerC [Sphingobacterium spiritivorum ATCC
           33861]
          Length = 293

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 39/271 (14%), Positives = 85/271 (31%), Gaps = 26/271 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESRKHTPSSAIQFLTS 139
              + ++  ++            D    +    H       S +       +S  + +++
Sbjct: 14  KRYSNHTIEAYTHELTIFFTFLQDQGIPEEEADHRVIRFYLSHLMEEGRQATSVNRSISA 73

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKSFWSEGSQPR-- 193
           +R  +K+  R+     NP   ++  K   +      K+ M     Q +      +  R  
Sbjct: 74  LRTYYKFLQRESLTDQNPLTLIKALKTPKKLPSVMEKDKMVGLLDQMEGAVDSFTDERDY 133

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAM---- 247
           L  E L  +G+R ++  +  +  +   N    I   K      V +    ++ L +    
Sbjct: 134 LVLELLFGTGIRLTELLQIKITDIDFYNKNILI-LGKRNKERLVPVNHTLLEKLKIYIQQ 192

Query: 248 ---TPIGKET--FFINNDKQKMNATQFSIWFKAKA--TKAGVNKSAHGVRKFSATISADA 300
                I  +T    +  + ++                      KS H +R   AT   D 
Sbjct: 193 LDNQKIDNKTAFLIVTKEGKQAYPKMIYRIVHRYLSLISTQRKKSPHVLRHTFATALLDN 252

Query: 301 GATAHELMATYGWKTVDQAETYTK-GADRIR 330
           GA  + +    G   +   + YT    +R++
Sbjct: 253 GADLNAIKELLGHAGLAATQVYTHNSVERLK 283


>gi|237744578|ref|ZP_04575059.1| integrase/recombinase [Fusobacterium sp. 7_1]
 gi|229431807|gb|EEO42019.1| integrase/recombinase [Fusobacterium sp. 7_1]
          Length = 328

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 41/295 (13%), Positives = 96/295 (32%), Gaps = 44/295 (14%)

Query: 88  AVNSRISFESYFDQIIR--KSGDFDY---------RKITTKHIRSGV----ESRKHTPSS 132
           +  +   +  +    +     G+ ++         + I  + + + +    E RK   +S
Sbjct: 33  SEKTVKDYMFHLKDFLHFVYDGENNFSISEVIPLMQDIEKEDVEAYIVHLFEDRKLKKTS 92

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW--TKEDMQQFKSFWSEGS 190
               L++++ L+K          NP   ++  K           + +D+++    +   S
Sbjct: 93  VNTILSALKSLYKELESNGL--KNPVKYIKLFKVNRNIENILKVSIDDIRKIIGLYKIDS 150

Query: 191 QPR----LAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDGFM 242
           + +         L Y+G+R  +      +H         F +   K+G  +   +    +
Sbjct: 151 EKKYRNITILYTLFYTGMRSKELLTLKFKHYLKRENEYFFKLIETKSGKDVYKPIHKSLV 210

Query: 243 K-------------LLAMTPIGKETFFINN--DKQKMNATQFSIWFKAKATKAGVNKSAH 287
           K              L +  + ++  F  +  D   ++    +   +      G + S H
Sbjct: 211 KKLEEYKEYLMSMYSLDLKDLEEKYIFSTSVLDNSPLSYRSLNAIIQDMGKLIGKDISPH 270

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
            +R   AT  + +GA   E+    G       E Y     R  L  K   ++  +
Sbjct: 271 NIRHAIATELSLSGADILEIRDFLGHSDTKVTEVYINA--RSILEKKVLEKLPEI 323


>gi|77464133|ref|YP_353637.1| site-specific tyrosine recombinase XerC [Rhodobacter sphaeroides
           2.4.1]
 gi|126462976|ref|YP_001044090.1| site-specific tyrosine recombinase XerC [Rhodobacter sphaeroides
           ATCC 17029]
 gi|77388551|gb|ABA79736.1| putative site-specific recombinase [Rhodobacter sphaeroides 2.4.1]
 gi|126104640|gb|ABN77318.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17029]
          Length = 306

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 44/249 (17%), Positives = 81/249 (32%), Gaps = 19/249 (7%)

Query: 101 QIIRKSGDFDYRKITTKHIRSGVE---SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINP 157
            +    G      +    +R+ +    +R     S  + L+++R    W   +E V    
Sbjct: 48  HLGEGYGLKRLASVPHADLRAWMAHERARGLGARSLARSLSAVRQFTGWLAEREGVDATA 107

Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-------GSQPRLAFEFLLYSGLRCSDSC 210
            LS   PK + +  RP ++ D +   S  +E        ++       L   GLR S++ 
Sbjct: 108 VLSARGPKFRRKLPRPLSEADAKALLSTVAEDAAEDWIRARDLAVVTLLYGCGLRISEAL 167

Query: 211 RA-GVQHLQNNIFSIKTQKTGTIITVELPDGFMKL-----LAMTPIGKETFFINNDKQKM 264
              G  H    +  I  +     +   LP     +     L    +     F       +
Sbjct: 168 GLPGTAHPLPEVLRITGKGDKERLVPSLPVARAAVARYAALCPFDLASGVLFRGARGGPL 227

Query: 265 NATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           N    +   +      G+    + H +R   AT   +AG     +    G  ++   + Y
Sbjct: 228 NPRLVARTMERARATLGLPPTATPHALRHSFATHLLNAGGDLRSIQELLGHASLSTTQVY 287

Query: 323 TKGADRIRL 331
           T   D  RL
Sbjct: 288 T-AVDGARL 295


>gi|301299429|ref|ZP_07205708.1| putative toxin-antitoxin system, toxin component, PIN family
           [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|300852965|gb|EFK80570.1| putative toxin-antitoxin system, toxin component, PIN family
           [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 384

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 56/332 (16%), Positives = 107/332 (32%), Gaps = 57/332 (17%)

Query: 61  INSPRKKPTTL----KWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKIT 115
           + + ++K  T     K    +Y+ +     +  ++  +  +  + QI+   G     KI 
Sbjct: 61  LPTSKRKIMTFDEAYKMWFEQYKTT-----VKESTAYTQNNIINVQILPYFGSLRVDKID 115

Query: 116 TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP-- 173
           T   +  V        +    +   R +  +A   + +  NP   V  PK++        
Sbjct: 116 TAFCQKQVNRIFKNLKNYNNVINITRQILDYAKIMKQIKTNPMNDVIVPKKRKTLDDTDN 175

Query: 174 ----WTKEDMQQFKSFWSEGS--QPRLAFEFLLYSGLRCSDSCRAGVQHLQ--------- 218
               +TKE ++ F     + +  Q  + F  L ++G+R  +        +          
Sbjct: 176 QVNFYTKEQLKVFLGALKKHTTYQMYVVFRVLAFTGMRKGELAALKWSDIDFNNETITID 235

Query: 219 -------NNIFSIKTQKTGTIITV----------------ELPDGFMKLLAMTPIGKETF 255
                  N    I+  KT   I                  EL     K       G    
Sbjct: 236 KTVAIDSNGGLHIQAPKTRKSIRTISVDDTTLNALRTWKNELRKELFKQGKNIDKGDGFI 295

Query: 256 FINNDKQKMNA--TQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGW 313
           F  N+   +N    QF   F  K     +    HG R   A++  ++GA+  E+    G 
Sbjct: 296 FHRNNGNFINKYIDQFLPSFLRKYNLPQIK--PHGFRHTHASLLFESGASIKEVQDRLGH 353

Query: 314 KTVDQA-ETYTKGADRIRLGIKNSRRISSVVD 344
           + +    + YT      R   K + + +  +D
Sbjct: 354 ENIKTTMDIYTHVTKSAR--EKTAEKFAKYID 383


>gi|307309696|ref|ZP_07589348.1| integrase family protein [Sinorhizobium meliloti BL225C]
 gi|306899908|gb|EFN30531.1| integrase family protein [Sinorhizobium meliloti BL225C]
          Length = 355

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 44/267 (16%), Positives = 88/267 (32%), Gaps = 14/267 (5%)

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSR-ISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
           K TTL  L+  Y     W          +F    D+I+  +    + +     +   +  
Sbjct: 82  KETTLAELLQRY-ADILWDEGRHKYNVKAFIGELDEILLGARFSAFSQELLDGLIGALRK 140

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           R ++ ++  + + ++  L + A +   +   P    +R K K   +R    ++ +     
Sbjct: 141 RGNSNATINRKMAALGKLLRKAYKMGDIHNLP--EFKRQKEKAGRLRFLEADEEEVLFRE 198

Query: 186 WSEGSQPRLAFEFLLY-SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
            +  S+  L     L  +G R  ++       +     +    K+G   TV L       
Sbjct: 199 IASRSELYLYLSIFLVDTGARLGEAIALKWNDIHEGRATFWVTKSGRSRTVPLTVRAKDA 258

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV----NKSAHGVRKFSATISADA 300
           L          F   D+QK     +   + A    AG+    +   H +R   A+     
Sbjct: 259 LKRVADRSPGPFSRIDQQK-----YRAVWNAAKVDAGLGNEDDLVPHILRHTCASRLVRG 313

Query: 301 GATAHELMATYGWKTVDQAETYTKGAD 327
           G     +    G +T++    Y   A 
Sbjct: 314 GIDLRRVQMWLGHQTLEMTMRYAHLAS 340


>gi|294647358|ref|ZP_06724951.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294809021|ref|ZP_06767743.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
 gi|292637317|gb|EFF55742.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294443746|gb|EFG12491.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
          Length = 330

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 34/282 (12%), Positives = 90/282 (31%), Gaps = 21/282 (7%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR----SGVESRKHT 129
           L++ +  +      +  +   + +  ++++          ITT  IR       E  + +
Sbjct: 55  LLNSFISAKKIEGCSDKTLTYYRNTIERLLVTL-SLAICHITTTDIRTYLSDYQEEHQSS 113

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
             +           F W   ++Y+A +P   + + K  +      + E ++Q +   +  
Sbjct: 114 KVTIDNMRRIFSSFFAWLEDEDYIAKSPVRRIHKVKTDSLVKEVLSDEQLEQLRDSCT-N 172

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT----QKTGTIITVELPDG----F 241
            +     + L  +G+R  +  +   + +    F  +      K      V          
Sbjct: 173 KRDLAIIDILASTGIRVGELVKLNREDID---FHERQCVVFGKGNKERIVYFNARTKLHL 229

Query: 242 MKLLAMTPIGKETFFINNDKQK--MNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISA 298
            + L          F++       +  +   I  +       + K   H  R+  AT++ 
Sbjct: 230 QQYLNERTDDNPALFVSLHSPHTRLTISGVEIRIRKLGQSLSMPKVHPHKFRRTLATMAI 289

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
           D G    ++    G   +D    Y    ++  + + + + + 
Sbjct: 290 DKGMPIEQVQRLLGHVRIDTTLHYA-IVNQNNVKLAHKKYLG 330


>gi|289165155|ref|YP_003455293.1| phage integrase [Legionella longbeachae NSW150]
 gi|288858328|emb|CBJ12196.1| putative phage integrase [Legionella longbeachae NSW150]
          Length = 333

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 41/261 (15%), Positives = 88/261 (33%), Gaps = 12/261 (4%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           + +  +  + K       ++   I    + D  +R     +  +   + +    E    T
Sbjct: 57  SWQDAVVRWLKENE-HKRSLKDDIMHLRWLDPYLRGFQLHEITRDILEEVAIKKEDTGVT 115

Query: 130 PSSAIQFLTSMRVLFKWA-VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           P++  + L  +R + + A +  E++   P   V     + + IR  T  +  +  +    
Sbjct: 116 PTTINRMLEVVRAILRKAQMEWEWLDKVPV--VRMRHVEKQRIRWLTIGEANRLLNELPS 173

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN----NIFSIKTQKTGTIITVELPDGFMKL 244
             +     +F L +GLR S+        +              K    I V L    + +
Sbjct: 174 HLKD--MADFSLSTGLRASNVTGLRWSDVDLIKRHAWIHPDQAKANKAIPVPLNAHALAI 231

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGAT 303
           L     G  T ++   + K      +  ++    +AG++    H +R   A+     G +
Sbjct: 232 LKRR-RGIHTDYVFTYQDKQIRQCNTKAWRKALDRAGIDNFRWHDLRHTWASWHVQNGTS 290

Query: 304 AHELMATYGWKTVDQAETYTK 324
             EL    GW + +    Y  
Sbjct: 291 LQELQQLGGWSSFEMVLRYAH 311


>gi|296169729|ref|ZP_06851346.1| phage integrase [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295895626|gb|EFG75323.1| phage integrase [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 325

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 46/272 (16%), Positives = 80/272 (29%), Gaps = 8/272 (2%)

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127
           P   +  IS +            +      +   I R+S      +IT   +      RK
Sbjct: 9   PQLWEAAISGWMIWLRIAGKREGTIELRRDHLRSIARRSRTSGPAEITLSTLVLLCSERK 68

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            +        TS+   + WA+  + V++NP   + R K      RP   +  ++  +   
Sbjct: 69  WSNDHRKSVRTSLISFYDWAIDADLVSMNPAAKLPRVKPDLPAPRPAPDDVWEELLAAAQ 128

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN---NIFSIKTQKTGTIITVELPDGFMKL 244
              + RL       +GLR ++        L         I   K G      L DG    
Sbjct: 129 P--RERLMARLAGEAGLRRAEVALVHSDDLIRDLHGWSLIVHGKGGKQRVAPLNDGLTAE 186

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATA 304
           L          F       ++A                  S H +R   AT+        
Sbjct: 187 LRAFCTSHGYLFPGQVDGHISAEWVGTVISRLMP---PGWSMHKLRHRFATLGYSGTGNL 243

Query: 305 HELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
             +    G  +V   + YT  + R    + ++
Sbjct: 244 RAVQEALGHASVATTQRYTAVSTREVRSVADA 275


>gi|194015373|ref|ZP_03053989.1| site-specific recombinase, phage integrase family protein [Bacillus
           pumilus ATCC 7061]
 gi|194012777|gb|EDW22343.1| site-specific recombinase, phage integrase family protein [Bacillus
           pumilus ATCC 7061]
          Length = 353

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 42/211 (19%), Positives = 79/211 (37%), Gaps = 15/211 (7%)

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS- 187
           +P S   ++ ++R LF++A  +    +NP    +      E +   + +++++  S    
Sbjct: 110 SPKSVNDYIKTLRTLFRFAQHEGSALLNPFDDTKLVSDPEEMVNILSPDELRRLLSAPDQ 169

Query: 188 ---EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----NNIFSIKTQKTGTIITVELPDG 240
               G +  +   FL+ S  R  +      +++        FS    KT     V L   
Sbjct: 170 RTFVGFRDYVIMTFLVDSMARIGEILSLTKENVDYASSTVYFSAWDVKTRQGRFVPLERK 229

Query: 241 FMKLLAMTPIGKETF-----FINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFS 293
            M L+    I  E F     F++N  +++    F       A + G+ K    H  R   
Sbjct: 230 TMNLIKELLIENEDFESPFVFLSNYGEQLETNHFRKQLNRYAEQVGITKKVHPHLFRHTG 289

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324
           AT+  + G     L A  G + +   + YT 
Sbjct: 290 ATMYLENGGDIRHLQAMLGHRDMRMVKRYTH 320


>gi|194017070|ref|ZP_03055682.1| DNA integration/recombination [Bacillus pumilus ATCC 7061]
 gi|194010938|gb|EDW20508.1| DNA integration/recombination [Bacillus pumilus ATCC 7061]
          Length = 363

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 67/351 (19%), Positives = 117/351 (33%), Gaps = 56/351 (15%)

Query: 20  KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYR 79
           +I YY      RR +      +    A  +A+  +    +++   +    T+   I  + 
Sbjct: 14  RIPYYDPVTQKRREKSKKGFRTKKEAATEAAIVQAEINGDFVR--KDDNITISSYIDLWF 71

Query: 80  KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
           +         +    ++S    I +  G    + +T K     +   K  P  A   LT+
Sbjct: 72  EKYKLTVKKSSWDSRYDSII-VIKKNLGSCRVKDVTEKTYEGFLN--KIAPEYAKNTLTN 128

Query: 140 MRVLFK----WAVRQEYVAINPCLSVERPKRKT-----------EGIRPWTKEDMQQFKS 184
           +  +F      AVR  Y   NP  +V  PK+             + ++ W KE+++ F  
Sbjct: 129 IHQVFNMMIREAVRDSYFKDNPIHAVNLPKKAKEKKVEELDEDLKDMKFWEKEEIKLFLQ 188

Query: 185 FWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ--------------- 227
             S   +PR    F  L+YSGLR  ++       +      IK +               
Sbjct: 189 VVSRKGRPRDLAMFLLLIYSGLRIGEAVALTWDKVDFKKSEIKVRYTLFREKDLKSNYEL 248

Query: 228 ---KTGTIIT-VELPDGFMKLLAMTPI--------------GKETFFINNDKQKMNATQF 269
              KT + I  V +P   +  L +                  ++  F +N      A  F
Sbjct: 249 LSPKTESSIRNVPVPPQVIMQLRILKNVQEQVKNDVGELYKDEDFVFADNSGMPEPARNF 308

Query: 270 SIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
           +        KAGV K + H +R   A++   AG    E     G  +    
Sbjct: 309 NYRMATYIKKAGVTKITPHNLRHTYASLLFAAGIDLKEAQRRLGHSSSKTT 359


>gi|86131808|ref|ZP_01050405.1| phage integrase family protein [Dokdonia donghaensis MED134]
 gi|85817630|gb|EAQ38804.1| phage integrase family protein [Dokdonia donghaensis MED134]
          Length = 296

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 41/265 (15%), Positives = 95/265 (35%), Gaps = 26/265 (9%)

Query: 85  GSLAVNSRISFES----YFDQIIRKSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFL 137
            + + ++ +++E     +F  +    G+ D  K+    IR+ + S      +  S  + +
Sbjct: 14  KNYSKHTVLAYEKDVTSFFVFLENNYGERDPVKVAYAQIRAWIISLVDAGLSSQSVNRKV 73

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS-----QP 192
           +S++  +K+ ++   + ++P +  +  K       P++++++        E       + 
Sbjct: 74  SSLKSYYKFLLKTGDILVSPLVKHKSLKVSKRVQIPFSEKEVAIVLEELRESQDFTSLRD 133

Query: 193 RLAFEFLLYSGLRCSDSC--RAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA---- 246
            L  E L  +G+R ++      G       I  +K  K      + L  G +  L     
Sbjct: 134 LLIVELLYGTGMRRAELIDLTMGSVDFSQKILKVK-GKRDKERFIPLLPGVITTLERYVV 192

Query: 247 -----MTPIGKETFFINNDKQKMNATQFSIWFKAKATKA--GVNKSAHGVRKFSATISAD 299
                      E   +     K+ +T          ++A      S H +R   AT   +
Sbjct: 193 ERAQVAQSGNSEPLLVTLKGLKVYSTLVYRIINRYFSEASDKFKTSPHILRHSFATHLLN 252

Query: 300 AGATAHELMATYGWKTVDQAETYTK 324
            GA  + +    G  ++   + YT 
Sbjct: 253 QGADLNVVKELLGHASLASTQVYTH 277


>gi|306836381|ref|ZP_07469359.1| tyrosine recombinase XerD [Corynebacterium accolens ATCC 49726]
 gi|304567741|gb|EFM43328.1| tyrosine recombinase XerD [Corynebacterium accolens ATCC 49726]
          Length = 305

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 40/266 (15%), Positives = 84/266 (31%), Gaps = 22/266 (8%)

Query: 85  GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMR 141
              A  +   + +    +   I    DF+   +  + + + V   K   + A +   S++
Sbjct: 32  KGRAEATVRGYRADLKNLAQEIDTFADFNLNNL-RQWLGNAVAEGKARATLARRT-ASVK 89

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM-----QQFKSFWSEGSQPRLAF 196
               WA R+ Y+  +    +  PK           +              +   +     
Sbjct: 90  AFSTWAERERYLTRDVAARLVTPKVGQHLPTVMAPQQAGELVGNAVSVDEAHFQRDSAIL 149

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-----ELPDGFMKLLAM---- 247
           E L  +G+R ++  R  ++ +     + +    G    V        D   + +      
Sbjct: 150 ELLYATGMRVAELVRLDLEDVDFKRSTARVTGKGNKQRVVPFGAAATDALQQWIDGGRKE 209

Query: 248 -TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAH 305
                 +  F+ +   +++  Q        AT  G    + HGVR  +AT   + GA   
Sbjct: 210 MARGETQAIFVGSRGARIDQRQVRRIVDKAATVTGTSGLTPHGVRHLAATHLLEGGADLR 269

Query: 306 ELMATYGWKTVDQAETYTKGADRIRL 331
            +    G  ++   + YT      RL
Sbjct: 270 VVQELLGHSSLSTTQIYTH-VSAKRL 294


>gi|256840177|ref|ZP_05545685.1| LOW QUALITY PROTEIN: tyrosine type site-specific recombinase
           [Parabacteroides sp. D13]
 gi|256737449|gb|EEU50775.1| LOW QUALITY PROTEIN: tyrosine type site-specific recombinase
           [Parabacteroides sp. D13]
          Length = 267

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 44/213 (20%), Positives = 76/213 (35%), Gaps = 18/213 (8%)

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVE---RPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
                   + + A++ + +AINP   ++   +PK +       T E++++  +   E   
Sbjct: 54  NLYKKFAWVIRKAMQADIMAINPLDKIDNTDKPKPEDGQREFLTIEEIKRLMNTPCEDDM 113

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVELPDGFMKLLA 246
            + AF F    GLR SD  +     L  +     I  I+  KT       +    +K L 
Sbjct: 114 LKCAFIFCCLVGLRYSDVKKLVWNDLYEDNEGAIILRIRVTKTKRCEDFPISKEALKWLP 173

Query: 247 -MTPIGKETFFINNDKQKMNATQFSIW-FKAKATKAGVNK--SAHGVRKFSATISADAGA 302
                G E  F      K+     S    K   T AG+ K  + H  R  +AT++   G 
Sbjct: 174 ERIGSGDEKIF------KLPKNDNSNRKLKHWCTLAGITKNVTFHVARHTAATLNLSLGV 227

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335
               +    G   +   + Y K  D  +    +
Sbjct: 228 PIETVSKLLGHTKISTTQIYAKVIDANKKAAVH 260


>gi|257784351|ref|YP_003179568.1| integrase family protein [Atopobium parvulum DSM 20469]
 gi|257472858|gb|ACV50977.1| integrase family protein [Atopobium parvulum DSM 20469]
          Length = 403

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 45/293 (15%), Positives = 91/293 (31%), Gaps = 44/293 (15%)

Query: 74  LISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132
               Y KS      +   +  S+++    I    G+   ++IT   +   V     +  +
Sbjct: 77  YCLNYFKSLVATQQIERRTYTSYKNNVRYIDLFFGEKRLQEITVTDVELYVSWLYDSGYA 136

Query: 133 AIQFLTSM---RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-- 187
           A     +    R   + AV    +  +PC +++ PK       P  +   ++ +   S  
Sbjct: 137 ANTVKKAFNSFRACTRHAVAIRDLQYDPCAAIKAPKGYLAPPNPLNEPSRKKLQVMLSAL 196

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-----------------QNNIFSIKTQKTG 230
           E S   LA     Y+G+R  + C    + +                       IK  K G
Sbjct: 197 ELSPMVLATYLAYYTGMRREECCGLQWKDVKFKAEDVTAHLCRAISYDGGKTYIKGLKNG 256

Query: 231 TIITVELPDGFMKLLA--------------MTPIGKETFFINNDKQKMNATQFSIWFKAK 276
              TV +P   + +L               +    +     +   + +   + + W+K+ 
Sbjct: 257 KDRTVPIPAPLVDILKQWRSKYIEDCMLMGIAFSEEMYVLGDFSGEYLRPERATAWWKSH 316

Query: 277 ATKAGVNKS------AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           + + G+  +       H +R   AT  A             G   ++    Y 
Sbjct: 317 SEEWGLLGTQGRRPVFHDLRHTYAT-IAVRTMDIKSAQDILGHSDINMTMRYA 368


>gi|7263003|gb|AAF44051.1|AF206717_5 ResU [Shuttle vector pI3]
          Length = 321

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 41/281 (14%), Positives = 85/281 (30%), Gaps = 36/281 (12%)

Query: 85  GSLAVNSRISFESYFDQIIR--KSGDFD-------YRKITTKHIRSGVESRKHTPSSAIQ 135
              +  +   +      +     + D         + +++   +R+ + +   +P    +
Sbjct: 18  QGRSPATVREYLKDVRLLRSWLDAEDKPQHLRGRDWGELSAADLRAFLAAADPSPRRFHR 77

Query: 136 FLTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPWTKEDMQQFKSF------WS 187
            + S R  +++ VR + +    +    +  PK         T ED+ +            
Sbjct: 78  LVNSWRSFWRFLVRVQKLPGVQDITADLTTPKIPKRAPVKLTLEDVSKLLEVVYRDKSPQ 137

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHL---QNNIFSIKT-QKTGTIITVELPD---- 239
            G +      FL  +GLR S+        +     +  +++   K      V L      
Sbjct: 138 RGLKNWCIVAFLYGTGLRISEMLAMKFADIEYQDGSPVAVRVIGKGDKERRVPLSPTAQG 197

Query: 240 GFMKLLAMTPIGKETFFI--------NNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288
             M+ L                        Q+M A          A +AG++    S H 
Sbjct: 198 ALMRWLRERKTHGNPVTPWVWSPLSGKRYGQQMQARTIGKMLDTAAERAGLDPATVSPHK 257

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           +R   AT   + G T  E+    G + +     Y +   R 
Sbjct: 258 LRHTFATTLLNNGRTLDEIKELLGHENIQTTMIYAQTDTRR 298


>gi|229181765|ref|ZP_04309077.1| Integrase [Bacillus cereus 172560W]
 gi|228601703|gb|EEK59212.1| Integrase [Bacillus cereus 172560W]
          Length = 267

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 39/265 (14%), Positives = 91/265 (34%), Gaps = 36/265 (13%)

Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
           +   + ++ +  +  +       +R +FK AV  E +  N    V++P+ +   ++ W+ 
Sbjct: 3   QSYYAELKEKGLSNGTISNIHRCLRCIFKHAVEWEIIHENIMNKVKKPREEQGEMKTWSS 62

Query: 177 EDMQQFKSFWSE-GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
           E+  +F  +  E   +  + F   +Y+G+R  +      + +  +   I   K+      
Sbjct: 63  EECNRFLQYLKEKNIKYHIFFLLAIYTGMRRGELLALTWKDIDFDNKRILVNKSLVKTEK 122

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK--------------------- 274
            L     K  +       + F+    Q   + +   +F+                     
Sbjct: 123 GLFKAATKTKSSNRSISISSFVIRKLQSYYSYKKKEFFRWGIHLDEEAYIFTGNTIHSPL 182

Query: 275 ----------AKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETY 322
                        TKAGV +   H +R   AT+   AG     +    G  ++    + Y
Sbjct: 183 HIDAPHRFLNDHYTKAGVPRIRIHDLRHTHATLMLQAGEHPKIVQDRLGHSSIQMTLDKY 242

Query: 323 TKGADRIRLGIKNSRRISSVVDSDD 347
           +       +  + +    S++ S++
Sbjct: 243 SHITQ--NMQQQAAENFESIIKSNE 265


>gi|16519719|ref|NP_443839.1| putative integrase/recombinase of undefined transposable element
           [Sinorhizobium fredii NGR234]
 gi|2497416|sp|P55429|Y4EF_RHISN RecName: Full=Putative integrase/recombinase y4eF
 gi|2182375|gb|AAB91651.1| putative integrase/recombinase of undefined transposable element
           [Sinorhizobium fredii NGR234]
          Length = 251

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 28/220 (12%), Positives = 73/220 (33%), Gaps = 12/220 (5%)

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
             +K  P S    L+++R  F   + +++    P   +  PK+  +     + +++Q F 
Sbjct: 16  NEKKLAPGSIHIALSALRFFFNVTLERDWA---PEEVLPLPKKPQKLPIILSPDEVQHFL 72

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ--KTGTIITVELPDGF 241
              ++  +          +GLR S++ +     + +    ++ +  K      V L    
Sbjct: 73  GCVAD-VKHHAILTTCYAAGLRISEAVQLKPTDIDSQRMVVRVEHGKGQKDRYVMLSPKL 131

Query: 242 MKLLA---MTPIGKETFFINND-KQKMNATQFSIWFKAK--ATKAGVNKSAHGVRKFSAT 295
           +++L         +   F  +     +               ++     + H +R     
Sbjct: 132 LEILRDYWRMWRPEAWLFPGDRAGHPITRYAVGQACVKPHDLSRLSKPVTPHSLRHAFVV 191

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335
              +AGA    +    G +++     Y + A       ++
Sbjct: 192 HLLEAGADVRTIQPLLGHRSLATTAHYLRIATNKVCATES 231


>gi|303327829|ref|ZP_07358269.1| prophage DLP12 integrase [Desulfovibrio sp. 3_1_syn3]
 gi|302862190|gb|EFL85124.1| prophage DLP12 integrase [Desulfovibrio sp. 3_1_syn3]
          Length = 320

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 42/300 (14%), Positives = 99/300 (33%), Gaps = 13/300 (4%)

Query: 48  MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG 107
            SA +  +      +  R     L   ++      H      + R+       ++    G
Sbjct: 8   HSATSRPSGNSRRRDGARAAILRLDAFVAAVYL-PHVRLRKRSWRVDERIARQRLSPAFG 66

Query: 108 DFDYRKITTKHIRSGVESRKHT---PSSAIQFLTSMRVLFKWAVRQEYVA--INPCLSVE 162
                +I    +   +         P++  + L   + +   A+    +    +PC  V 
Sbjct: 67  ARRLDRIRRGEVEDWLRDLAEEGLCPATCNRILAVFKSVCSLAMLHGVLPAGQSPCADVP 126

Query: 163 RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA-FEFLLYSGLRCSDSCRAGVQHLQNNI 221
             K   +  R    ++ Q+        ++P  A    LL +G R S+  +A  ++++ ++
Sbjct: 127 PFKIHLQRERYLAPDEAQRLMRELERSARPEAAAIRLLLLTGARKSEILKARWENVRLDL 186

Query: 222 --FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI---NNDKQKMNATQFSIWFKAK 276
              ++   K+G    + L D  + ++   P G    ++   +   + ++   +  W   +
Sbjct: 187 RLLTVPLSKSGKPRHLPLSDAAVAVIRALPRGPGCPWLFPGHAPGKPLS-DVYLFWDGLR 245

Query: 277 ATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
                 +   H +R   A+   +AG + +E+    G         Y        L    S
Sbjct: 246 RGLGLADVRIHDLRHTFASFLVNAGHSLYEVQKLLGHSDPRTTMRYAHLGQASLLAAAQS 305


>gi|83310003|ref|YP_420267.1| integrase [Magnetospirillum magneticum AMB-1]
 gi|82944844|dbj|BAE49708.1| Integrase [Magnetospirillum magneticum AMB-1]
          Length = 359

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 51/335 (15%), Positives = 106/335 (31%), Gaps = 31/335 (9%)

Query: 12  TKERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
            K    +GKI +    R+     +             + +       +  + +    + T
Sbjct: 15  IKRVGTNGKISWQARVRRKGFPDMF-KTFRTKVEAQKWAAVTESEMARHVFTDRSLAERT 73

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           TL   +  YR                +++    + K        +  +  ++ V  +K T
Sbjct: 74  TLGDALEVYRDEVTVEKAGHQEGYVIKAWLKHPLSK---RTLSSLKVRDFQAWVTEKKAT 130

Query: 130 --PSSAIQFLTSMRVLFKWAVRQEYVAI--NPCLSVERPKRKTEGIRPWT---------K 176
             P +    +  +  L+        +    NP L +  P       R            +
Sbjct: 131 VGPKTIRLHIGVISNLYNRLENLLEIEALPNPVLKLILPPLPEGRDRRLNVIEHDDGTVR 190

Query: 177 EDMQQFKSFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT----QKTG 230
            + +      ++   P  R A EF L   +R ++  +   +H+  N   ++      KTG
Sbjct: 191 NEAEALIGACADAVNPWIRPAVEFALDGAMRRNEIVQMRWEHVDLNAGMVRLPAAITKTG 250

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGV 289
               V L    +++L   P       I+     + A      F     +AG++    H +
Sbjct: 251 VSRDVALSPAGVQVLRTLPRS-----IDGRVFPLTADALYRAFVRARKRAGLDDLHFHDL 305

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           R  +A+   + G    E+ +  G KT+   + Y  
Sbjct: 306 RHEAASRLREEGLDLMEIASITGHKTLQMLKRYVH 340


>gi|291544906|emb|CBL18015.1| Site-specific recombinase XerD [Ruminococcus sp. 18P13]
          Length = 331

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 41/299 (13%), Positives = 93/299 (31%), Gaps = 39/299 (13%)

Query: 85  GSLAVNSRISFESYFDQIIRKS------------GDFDYRKITTKHIRS----------- 121
              +  +   +       ++               D D R +    +R            
Sbjct: 24  KGRSPRTVAEYNLDLRLFLKYIKFMKTEHNQPAVEDMDIRDVDITLLRQVTLQDIYQFEY 83

Query: 122 -GVESRKHTPSSAIQFLTSMRVLFKWA-VRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
              + R++   +  +  ++++  F +       +  NP   +E P  K    +  + E+ 
Sbjct: 84  YLQDDRQNRDRARSRKTSAVKGFFSYLTYNMTLLEKNPAEHLELPGVKHSLPKFLSLEES 143

Query: 180 QQFKS--FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVE 236
            +  S        +        L  G+R S+     VQ +      ++   K      + 
Sbjct: 144 LRMLSSVESDHPQRDYCILVLFLNCGIRLSELVGINVQDVDMYERRLRILGKGNKERMIY 203

Query: 237 LPD-------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK---AKATKAGVNKSA 286
           L D        +++     P      F++ + ++++  +     +     A   G   S 
Sbjct: 204 LNDACLSAITEYLQTRKNPPTEPNALFLSRNNRRISRRRVQQIVESVLKNADLGGKGLST 263

Query: 287 HGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
           H +R  +AT+    G      L    G K++   E YT  +D  R        +++V +
Sbjct: 264 HKLRHTAATLMYQHGNVDTLTLKEILGHKSIVTTEIYTHLSDEQRQDAIEHNPLANVKN 322


>gi|229590798|ref|YP_002872917.1| integrase (pseudogene) [Pseudomonas fluorescens SBW25]
 gi|229362664|emb|CAY49573.1| integrase (pseudogene) [Pseudomonas fluorescens SBW25]
          Length = 323

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 56/331 (16%), Positives = 95/331 (28%), Gaps = 45/331 (13%)

Query: 22  IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKS 81
            Y  R   G+R  +P   +        + L   TP +              ++   Y K 
Sbjct: 1   YYDGRTTDGKRKEIPLGTDLDQAKVEWARLERKTPPKPTHLMS--------YVFDRYEKE 52

Query: 82  AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMR 141
                 ++ ++        Q+ R         IT + +    ++R      A + +  + 
Sbjct: 53  II-PGKSIRTQSDNRKELKQLRRAFESAPIESITPQVVAQYRDARTAKVR-ANREIALLS 110

Query: 142 VLFKWAVRQEYVAI-NPCLSVERPKRKTE----GIRPWTKEDMQQFKSFWSEGSQPRLAF 196
             F  A         NPC  V R K K      G   W     +  +           A 
Sbjct: 111 HAFTIAREWGLTDKANPCFGVRRNKEKPRDYYAGATVWNAVYAEAVQELKD-------AM 163

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP------------DGFMKL 244
           +    +G R +D  +     L N    I   KT   + + L             D   + 
Sbjct: 164 DLAYLTGQRPADVLKIAATDLNNGFLLIGQGKTEKRLRLRLEDDGIQSGLSSFIDDLQER 223

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHG-------VRKFSATIS 297
            A+  I   T   N    +M+       +     KA +  SA G       +R+F     
Sbjct: 224 RAVNGIRTSTLITNASGLRMSQQMLRNRWDDAREKAAIKASADGDPALATSIRQFQFKDI 283

Query: 298 ADAGATAHEL---MATYGWKTVDQAET-YTK 324
               A+  EL       G  T +  +  Y +
Sbjct: 284 RPKAASEIELTHASRLLGHSTEEMTKKVYRR 314


>gi|223983261|ref|ZP_03633454.1| hypothetical protein HOLDEFILI_00734 [Holdemania filiformis DSM
           12042]
 gi|223964754|gb|EEF69073.1| hypothetical protein HOLDEFILI_00734 [Holdemania filiformis DSM
           12042]
          Length = 343

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 40/279 (14%), Positives = 97/279 (34%), Gaps = 15/279 (5%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH----T 129
           LIS++  +      +  +   +ES   ++  K  +     +TT  +R+ +   +     +
Sbjct: 68  LISKFISAKEIEGCSKRTTKYYESTLIKMNEKI-NMSITYMTTDDLRTYLTDYQKMNNCS 126

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            +S      ++   F W   + Y+  +P   + + K        ++ E ++  +   +  
Sbjct: 127 KASVDNIRRNLSSFFSWLEEENYILKSPMKRIHKIKTDKVIKETYSDETLELLRDSCTS- 185

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDG----FMKL 244
            +     + L  +G+R  +  +  +  +   N   +   K      V             
Sbjct: 186 LRDLAIIDLLSSTGMRVGELVKLNINDIDFENRECVVFGKGNKERPVYFDARTKIHLKNY 245

Query: 245 LAMTPIGKETFFINND--KQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG 301
           L          F++ D    ++  +   I  +    + G++K   H  R+  AT + D G
Sbjct: 246 LNTRNDDNPALFVSLDLPHDRLKISGVEIRLRQLGRRLGISKVHPHKFRRTVATKAIDKG 305

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
               ++ +  G   +D    Y    ++  +   + R IS
Sbjct: 306 MPIEQVQSLLGHSQIDTTMHYA-MVNQNNVKESHRRYIS 343


>gi|212693440|ref|ZP_03301568.1| hypothetical protein BACDOR_02956 [Bacteroides dorei DSM 17855]
 gi|212663953|gb|EEB24527.1| hypothetical protein BACDOR_02956 [Bacteroides dorei DSM 17855]
          Length = 297

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 48/283 (16%), Positives = 99/283 (34%), Gaps = 37/283 (13%)

Query: 78  YRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVESRKHTPSSA 133
           + KSA        +++ +  +    +       D++ +T    +     ++ + +  ++ 
Sbjct: 2   FAKSAIDNSDKKQSTKDNLHTTLAVLHDFRSGLDFKDLTYTFLRDFEQYLKEKGNAVNTI 61

Query: 134 IQFLTSMRVLFKWAVRQEYVAIN--PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
            + +  +R L   A+ Q Y+  N  P    +  K++         +++++ ++   E   
Sbjct: 62  AKHMRQLRTLVNEAINQGYMHANAYPFRKYK-IKQEKGRHEFLIPDELKKLETVEVEEES 120

Query: 192 PR---LAFEFLLYSGLRCSDSCRAGVQHLQN----NIFSIKTQKTGTIITVELP----DG 240
            R    AF F  Y+GLR SD C+   ++            K+ KTG  I + L       
Sbjct: 121 MRHVLDAFLFCCYTGLRYSDFCQLTPENFIRINGKRWLYFKSVKTGVEIRLPLHLLFESR 180

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISA 298
            + +L   P       +         ++ +   +  A   G+ K    H  R   AT+  
Sbjct: 181 ALGILDRYPDSGSLAAL------PCNSEVNRQLRKLAGLCGIKKRITYHVSRHTCATLLI 234

Query: 299 DAGATAHELMATYGWKTVDQAETYT-----------KGADRIR 330
             G     +    G  +V   + Y+           K A R R
Sbjct: 235 HQGVAITTVQKLLGHTSVKTTQIYSEILSSTIVRDLKNAQRKR 277


>gi|169343418|ref|ZP_02864422.1| phage integrase [Clostridium perfringens C str. JGS1495]
 gi|169298504|gb|EDS80590.1| phage integrase [Clostridium perfringens C str. JGS1495]
          Length = 386

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 45/322 (13%), Positives = 94/322 (29%), Gaps = 58/322 (18%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQII--RKSGDFDYRKIT---TKHIRSGVES 125
            + L   +  + H      ++   +E  +   I     G    + +     +   + +  
Sbjct: 67  FQGLFKSWLFNTHLLDKKPSTIERYEGLYRNYILNSSLGKSKIKNLNSLVIQEYYNNLYK 126

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAIN---------PCLSVERPKRKTEGIRPWTK 176
              + S+       ++    +     Y   +         P   +       E ++  T 
Sbjct: 127 GGRSVSTLKMLHKVIKPFLLFLYNNGYTKKDFGSKGLIKIPTEKI----NNEEELQVLTL 182

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII--- 233
           E+ + F +   EG++ +L F   L +GLR  +       ++    +++K  KT   +   
Sbjct: 183 EEQKIFLNSL-EGNKDKLIFMTALMTGLRLGELLNLKWSNVDLKEYTLKVDKTIKRVKNI 241

Query: 234 -------------------TVELPDGFMKLLAMTPIG--------------KETFFINND 260
                               V +P   +K L                     +  F  + 
Sbjct: 242 ETGKTELIEQEPKTKKSKRVVPIPLSLVKDLKELKKEQNKTKLLIGELYKNNDLVFATDF 301

Query: 261 KQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVD-Q 318
              +++   +  FK    KA +  K  H +R   AT   +       +    G   +   
Sbjct: 302 GNYLDSNNINKRFKKALIKANLEPKKFHSLRHTYATRLFENDVPLKTVSELLGHSNIQIT 361

Query: 319 AETY-TKGADRIRLGIKNSRRI 339
           A TY T   D  +  I     I
Sbjct: 362 ANTYITVLEDEKKKVINQLDNI 383


>gi|237745754|ref|ZP_04576234.1| phage integrase [Oxalobacter formigenes HOxBLS]
 gi|229377105|gb|EEO27196.1| phage integrase [Oxalobacter formigenes HOxBLS]
          Length = 354

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 41/241 (17%), Positives = 85/241 (35%), Gaps = 22/241 (9%)

Query: 95  FESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVR-QEYV 153
              Y D+I R                  ++  + TP+ A ++L+ +R +F  AV+  E++
Sbjct: 91  RSRYLDEITRPM----------IARIGEIKKAESTPARANRYLSLLRAIFNRAVKIWEWL 140

Query: 154 AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG 213
              P   +   +     +R  T E++++      +  +P   F F + +GLR S+     
Sbjct: 141 PKAPT--ITLYREPKLRVRYLTPEEIRRVFDELPDHQKP--IFTFSIMTGLRRSNVLNLR 196

Query: 214 VQHLQ----NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF 269
              +       I S    K G    V +     ++L         +      +++     
Sbjct: 197 WDQVDFMQDAIIISGNEMKAGKTHVVPMSATVKQILMDQVGKHPQYVFTYRGRRIG--DI 254

Query: 270 SIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
              F+    + G+ +   H  R   A+I    G   +EL     W + +  + Y   + +
Sbjct: 255 KTAFRKALKRTGITDYRWHDNRHTWASILIQNGVPLNELQEMGAWNSAEMVKRYAHLSPQ 314

Query: 329 I 329
            
Sbjct: 315 K 315


>gi|75761152|ref|ZP_00741143.1| DNA integration/recombination/inversion protein [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
 gi|228904570|ref|ZP_04068646.1| DNA integration/recombination/inversion protein [Bacillus
           thuringiensis IBL 4222]
 gi|74491351|gb|EAO54576.1| DNA integration/recombination/inversion protein [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
 gi|228855051|gb|EEM99634.1| DNA integration/recombination/inversion protein [Bacillus
           thuringiensis IBL 4222]
          Length = 392

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 53/324 (16%), Positives = 105/324 (32%), Gaps = 55/324 (16%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
            K  + E+       S  ++S    +   ++++    +   + IT K  ++ +       
Sbjct: 68  FKDFVQEWLNIYS-KSTKISSLRVRQKQSNKLVDFFANIKMKDITKKMYQTALNDLHDK- 125

Query: 131 SSAIQFLTSM----RVLFKWAVRQEYVAINPCLSVERPKR---------KTEGIRPWTKE 177
             A   L  +    R++FK A+  + +  NP  +V+ P++           + I+   KE
Sbjct: 126 GYAFNTLDGIHTAGRMIFKKAIELQIIKSNPTDNVKLPRKVETVEDIENDKKAIKYLEKE 185

Query: 178 DMQQFKSFWSEG--SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------ 229
           ++  F     E       + F  L YSGLR  +        +     +IK  KT      
Sbjct: 186 ELAHFLQVAKEKGLDNDYVFFSILAYSGLRAGELLALKWTDVDFENNTIKITKTLYNPDN 245

Query: 230 -------------GTIITVELPDGFMKLLAMTP--------------IGKETFFINNDKQ 262
                        G+I T+++  G MKLL                  + +          
Sbjct: 246 NSQHYHLLTPKTKGSIRTIKMDQGIMKLLKSHKAKQNELKLYTRPQYVDQGFVITKASGY 305

Query: 263 KMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQA- 319
                      K     + + K  + H  R    ++  +AG    E+    G   ++   
Sbjct: 306 PEVMKMIQNRLKRLIKLSNITKNITPHSFRHTHTSLLIEAGVGIKEIQQRLGHTDIETTM 365

Query: 320 ETYTKGADRIRLGIKNSRRISSVV 343
             Y        +  K S++ S ++
Sbjct: 366 NIYAHMT--KNMEEKASQKFSELM 387


>gi|291288556|ref|YP_003505372.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809]
 gi|290885716|gb|ADD69416.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809]
          Length = 386

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 52/292 (17%), Positives = 107/292 (36%), Gaps = 23/292 (7%)

Query: 55  TPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFES-YFDQIIRKSGDFDYRK 113
              +E +   R    T   L  E+        +A N+R +  S + + I    G      
Sbjct: 72  QKPKEELEVDRFLTATFDVLYLEWIDHK--THIAKNTRRTMLSFHRNHISPYIGHKLLGD 129

Query: 114 ITTKHIRSGVESRKHTPSSA--IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
           IT K IR  +        +    + L S+R  F   V + ++  +P   V+  + +   I
Sbjct: 130 ITEKDIRMMMTVMSKVNRNVVVNRKLRSVRSFFNEVVEEGHLKESPFKKVKYLRNEKVDI 189

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAF-EFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQ- 227
           +P+ +E++ +    ++E      +F  FL +SG R ++           +N    I+   
Sbjct: 190 KPFNQEELARLLVGFAEKYPAYESFVAFLAFSGCRPNEVVGLKWDKIDWENRKILIREGF 249

Query: 228 --------KTGTII-TVELPDGFMKLLAM---TPIGKETFFINNDKQKMNATQFSIWFKA 275
                   KT + +  +++ +    LL       I  E  F+N   +++    F   +  
Sbjct: 250 VLGEETLLKTDSSVRDIDMTEPLEVLLLQQLDKGIDSEYVFVNEFNRRICWENFRQKYHR 309

Query: 276 KATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKG 325
                 + ++ A+ +R   A+++   G     +    G   +     TYT+ 
Sbjct: 310 VLKLKNIVSRPAYQLRHTFASMAIKNGEDILWVSRMLGHSNLKTTLTTYTRY 361


>gi|262201386|ref|YP_003272594.1| integrase family protein [Gordonia bronchialis DSM 43247]
 gi|262084733|gb|ACY20701.1| integrase family protein [Gordonia bronchialis DSM 43247]
          Length = 390

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 58/328 (17%), Positives = 106/328 (32%), Gaps = 37/328 (11%)

Query: 22  IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKS 81
            +  R     R       + +   AY+S LT +     +++  R    T+  L  E+  +
Sbjct: 29  RWLVRWVDESREHSKSFDKKSDATAYLSELTTARNTGRFVH-ERAGRVTVAALWGEW--T 85

Query: 82  AHWGSLAVNSRISFE-SYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFL 137
           A  G L+  +  S E +Y   ++ +        I    +R+ V           +  + +
Sbjct: 86  AQAGHLSQKTIASRETAYCCHVMPRWAGVTVGDIRVTAVRAWVADMAQAGVGVPTIERAV 145

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE 197
             +R L + AV    ++ NPC++V+ P+R        +   +Q      +   +     E
Sbjct: 146 GVLRGLCELAVDDRRISANPCVNVKLPRRSHPDRAYLSVPHVQALAEAITFRPE---VVE 202

Query: 198 FLLYSGLRCSDSCRAGVQHLQ---------------NNIFSIKTQKTGTIITVELPDGFM 242
            L Y+GLR  +     V                          T KT    +V  P    
Sbjct: 203 LLAYTGLRWGEMAALRVSDFDMLRRRVDVSRSVTEVRGHLVWGTPKTHERRSVPFPAVLA 262

Query: 243 KLLAMTPIGK---ETFFINNDKQK-----MNATQFSIWFKAKATKAG---VNKSAHGVRK 291
           + +A    GK   +  F                 F    K    +A     + S H +R 
Sbjct: 263 ETIAPLMAGKGRDDLVFTAESGGVLRNSIWRPRVFDKAVKG-CQRADDTFPSLSPHDLRH 321

Query: 292 FSATISADAGATAHELMATYGWKTVDQA 319
            +A+++  AGA    +    G       
Sbjct: 322 TAASLAISAGANVKAVQRMLGHAKASMT 349


>gi|254303662|ref|ZP_04971020.1| possible bacteriophage integrase/recombinase [Fusobacterium
           nucleatum subsp. polymorphum ATCC 10953]
 gi|148323854|gb|EDK89104.1| possible bacteriophage integrase/recombinase [Fusobacterium
           nucleatum subsp. polymorphum ATCC 10953]
          Length = 329

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 34/262 (12%), Positives = 87/262 (33%), Gaps = 14/262 (5%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS- 132
            +  +  + H    +  S   +++  + + +K  D   + ITT  +R  +++ +   ++ 
Sbjct: 54  YLEAFLSAKHVEGCSRKSLKYYKATIENLFKKI-DKSIKHITTNDLREYLDNYQKEGNAS 112

Query: 133 ---AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
                         F W   ++++  +P   + + K  T     ++ E M+  +      
Sbjct: 113 KITIDNIRRIFSSFFAWLEEEDHILKSPVRRIHKVKTGTVVKETYSDEAMEIMRDNCKS- 171

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDG----FMKL 244
            +     + L  +G+R  +  +  ++ +       +   K      V             
Sbjct: 172 LRDLAIIDMLASTGMRVGELVKLNIEDIDFEGRECVVFGKGDKERKVYFDARTKIHLHNY 231

Query: 245 LAMTPIGKETFFIN--NDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG 301
           L          F++     +++  +   I  +    K  + K   H  R+  AT + D G
Sbjct: 232 LKTRDDDNSALFVSLLKPHKRLQISGVEIMLRQLGRKLNITKVHPHKFRRTLATKAIDKG 291

Query: 302 ATAHELMATYGWKTVDQAETYT 323
               ++    G + +D    Y 
Sbjct: 292 MPIEQVQQLLGHQKIDTTLQYA 313


>gi|331647433|ref|ZP_08348525.1| putative phage integrase protein [Escherichia coli M605]
 gi|331043157|gb|EGI15295.1| putative phage integrase protein [Escherichia coli M605]
          Length = 358

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 43/276 (15%), Positives = 87/276 (31%), Gaps = 26/276 (9%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--K 127
           T+   I  Y+       ++ N+     +  + I  K G     +ITT+HI   ++     
Sbjct: 75  TMADWIERYKTILIRRKVSRNTYKIRVNQLETIKEKLGGILLTEITTRHIAEFLDLWIEG 134

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK--RKTEGIRPWTKEDMQQFKSF 185
              + A    + +  +F+ A+ +  ++ NP      PK     E ++  T   +++    
Sbjct: 135 GKNTMAGSMRSVLSDMFREAIVEGRISQNPVTPTRAPKIVVTRERLKLKTYNCIREAADQ 194

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
                   LA +  L +G R  D        + ++   I+  KTG +I + L        
Sbjct: 195 LPAWFP--LAMDLALVTGQRREDITNMRFSDIYDDRLHIRQIKTGMMIAIPLSLSLPVAG 252

Query: 246 AMTPI--------GKETFFINNDKQKMN------ATQFSIWFKAKATKAGV-----NKSA 286
                         +  + I+   +K +          +  F A     G+       + 
Sbjct: 253 LRLGTVVEQCRLVSRGDYLISAGIRKNSPDGSIHPDGLTKKFVAARKLTGIQFSENPPTF 312

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           H +R   A                 G  +    + Y
Sbjct: 313 HEIR-SLAGRLYKETCGEEFAQRLLGHTSEKTTKMY 347


>gi|300727390|ref|ZP_07060803.1| phage integrase family protein [Prevotella bryantii B14]
 gi|299775330|gb|EFI71927.1| phage integrase family protein [Prevotella bryantii B14]
          Length = 328

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 41/262 (15%), Positives = 88/262 (33%), Gaps = 14/262 (5%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129
           LI  +  +      +  S   ++S  +  + K    +   ITT  +R  +    E    +
Sbjct: 53  LIDNFIAAKKVEGCSDKSISYYKSTINNALVKI-KKEVVHITTDDLRGYLNQYQEESGAS 111

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
             +       +   F W   + Y+  +P   + + K        +T E ++Q +   S  
Sbjct: 112 KVTVDNIRRILSSFFSWLEEENYIVKSPVRRIHKVKVGKTVKETYTDEALEQMRDHCS-N 170

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDG----FMKL 244
            +     + L  +G+R  +  R     +   N   I T K      V           K 
Sbjct: 171 IRDLALIDLLASTGMRVGELVRLNKNDIDYQNRECIVTGKGDKQRKVYFDARTKIHLQKY 230

Query: 245 LAMTPIGKETFFIN--NDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG 301
           +       +  F++  +   ++  +   I  +    +  + K   H  R+  AT++ D G
Sbjct: 231 VNSRTDTNDALFVSLLSPNNRLEISGVEIRLRRLGRELNIPKVHPHKFRRTLATMAIDKG 290

Query: 302 ATAHELMATYGWKTVDQAETYT 323
               ++    G +++D    Y 
Sbjct: 291 MPIEQVQHLLGHQSLDTTLQYA 312


>gi|298243894|ref|ZP_06967701.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
 gi|297556948|gb|EFH90812.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
          Length = 385

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 65/383 (16%), Positives = 124/383 (32%), Gaps = 68/383 (17%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW----L 74
           G+   Y R   G++                +AL              K+  TL      L
Sbjct: 18  GRFAGYIRLEGGKKKYFYGNTRKEVQDKVRAALN------------EKERGTLATGPNPL 65

Query: 75  ISEYRKSAHWGS-------LAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESR 126
           + +Y     W          A  + IS+ S     +I + G    R +T +HI++    +
Sbjct: 66  LKDYL--PEWLETVCKPPYRAPQTYISYRSVISKHLIPEIGHLKIRNLTARHIQNLYTKK 123

Query: 127 ---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
                 P++  Q    +      A++ E V+ N    +   K +   I P T+E+ +   
Sbjct: 124 IREGAKPATIEQMQKVLSGSLNSALQWEMVSTNVASKITTLKGEQREILPLTEEEAKVLL 183

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT--------- 234
              + G +        +  GLR  +      +++  +  ++  + T + +          
Sbjct: 184 ET-ARGHRLEGMILLGVTLGLRLGEITALKWKNIDLDAHTLTVKLTVSHVPSMSHVEKDP 242

Query: 235 --------VELPDGFMKLLA---------MTPIG--------KETFFINNDKQKMNATQF 269
                   ++LP+  ++ L             +G        K   F+N  +  M A Q 
Sbjct: 243 KTRASRRKIDLPNAVVQTLRQHYDEQKAEAEKMGLSLSEWNPKGLVFLNKRRGYMYAGQT 302

Query: 270 SIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKG-- 325
              F A   +AG+ K   H +R  +ATI    G     +    G  ++      Y+    
Sbjct: 303 RKEFYAILAQAGLPKMHFHDLRHSAATILLVKGVHPKMVQELLGHSSIVMTMNIYSHVMP 362

Query: 326 ADRIRLGIKNSRRISSVVDSDDP 348
           + R  +        S   + D P
Sbjct: 363 SMRKEVAGIMDTIFSEKKEEDKP 385


>gi|238922801|ref|YP_002936314.1| phage integrase family protein [Eubacterium rectale ATCC 33656]
 gi|238874473|gb|ACR74180.1| phage integrase family protein [Eubacterium rectale ATCC 33656]
          Length = 363

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 48/300 (16%), Positives = 95/300 (31%), Gaps = 30/300 (10%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           L   +  Y +    G L   +  + +   +  ++    +    +IT   I       +  
Sbjct: 64  LGAFVDVYFQDKA-GELKERTIKNKQYMIEAHVLPYFANKRMNEITPSDIIQWQNEMRAK 122

Query: 130 PSSAIQFLTS---MRVLFKWAVRQEYVAINPCLSVER-PKRKTEGIRPWTKEDMQQFKSF 185
             S          +  LF  A     +  NPC  V++  K   + +  WTK +   F   
Sbjct: 123 GYSQTYLRMVQNQITALFTHACNIYNLGNNPCKKVKKMGKADADKLNFWTKAEYDSFIRG 182

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ-------------KTG 230
             + S+  + FE L ++G R  +        +   NN  SI                KT 
Sbjct: 183 IDKESRYFVIFEILFWTGCREGEMLALTKSDIDFENNQISITKTYYRTERRDIITTPKTE 242

Query: 231 TIIT-VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHG 288
             I  +++P+   K +            N     + A       K +  K+GV +   H 
Sbjct: 243 QSIRVIDIPEFLKKEIEAYVNRCYGLPDNERLFPIVAEAVQHKLKRECAKSGVKQIRVHD 302

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVVDSDD 347
           +R        + G     +    G + +     TY        L     ++++ ++++  
Sbjct: 303 LRHSHVAYLINQGVQPLIIKERLGHRDIKITLNTYGH------LYPNQQKKVADMLNATR 356


>gi|159039223|ref|YP_001538476.1| integrase family protein [Salinispora arenicola CNS-205]
 gi|157918058|gb|ABV99485.1| integrase family protein [Salinispora arenicola CNS-205]
          Length = 296

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 47/285 (16%), Positives = 102/285 (35%), Gaps = 20/285 (7%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG-VESRKHTPSSA 133
           I+ Y +       +  +  S+ +   Q+       D  ++T   +    +++++   SSA
Sbjct: 8   IASYERYHRARRTSPETVDSYVTTLRQLAGFCSGRDLAEVTRVDVEEFLIDAQEIGNSSA 67

Query: 134 I--QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW--SEG 189
              +   ++R  ++W   +E V  NP   +  P   ++ I     + M            
Sbjct: 68  TVHKKFRNLRAFYRWCEVEEIVDSNPMARIAEPAVTSKPIPIVPADHMALLLKACGGKGF 127

Query: 190 SQPRLAFEFLLYSGL---RCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-VE--------L 237
           ++ R      L+      R S+     +  L      +     G  I  V         +
Sbjct: 128 TERRDTAMIRLWCEAGSPRVSEMVGITLDALDMRHDLVTLHGKGDKIRSVPFGAKTGQAI 187

Query: 238 PDGFMKLLAMTPIGK-ETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSAT 295
                        G+ E  ++      + ++      + +  +A + K + H +R  +A 
Sbjct: 188 DRYLRVRSKHRDAGRLEALWLAERGGALTSSGAYQMLERRCEEAKIPKINPHKLRHLAAH 247

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
           + ADAG +  + MA +GW + +    Y + A   R   + +RR+S
Sbjct: 248 LWADAGGSEGDAMALFGWSSAEMPRRYGRSAQVER-AQRAARRVS 291


>gi|238791773|ref|ZP_04635410.1| Phage integrase [Yersinia intermedia ATCC 29909]
 gi|238728877|gb|EEQ20394.1| Phage integrase [Yersinia intermedia ATCC 29909]
          Length = 263

 Score = 96.3 bits (238), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 44/252 (17%), Positives = 82/252 (32%), Gaps = 35/252 (13%)

Query: 99  FDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS--AIQFLTSMRVLFKWAVRQEYVAIN 156
              I ++  D   + +TTKHI   + +   +  S  A+   + +  +F+ A+    ++ N
Sbjct: 8   IGYINQEFEDKPLKAVTTKHIADFINTYVDSGKSSMAVNLRSVLSDVFREAIADGLISSN 67

Query: 157 PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR----LAFEFLLYSGLRCSDSCRA 212
           P  +   P  K +  R     D   F   +    Q R    L+    L +G R  D  + 
Sbjct: 68  PVEATRTPSPKVKRERL----DYAAFCKIYEAAGQQRNWVQLSLALALITGQRRDDVRQL 123

Query: 213 GVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG-----------KETFFINNDK 261
               + +    I   KT   I + L       +  T +G            E    ++ +
Sbjct: 124 KRSDVHDGKLWIVQSKTKMQIAISL--SLRLEIMKTTVGEIIEKCLNNSKSEYLICSSSR 181

Query: 262 Q------KMNATQFSIWFKAKATKAGV-----NKSAHGVRKFSATISADAGATAHELMAT 310
           +       +NA   +  F        +       S H +R   A+   +A          
Sbjct: 182 KSGRELGALNADSLTKAFVKALKATDLVYDISPPSFHEIR-SLASRLYEAEYGKEFAQKL 240

Query: 311 YGWKTVDQAETY 322
            G K++     Y
Sbjct: 241 LGHKSMKMTNVY 252


>gi|325922226|ref|ZP_08184012.1| tyrosine recombinase XerC subunit [Xanthomonas gardneri ATCC 19865]
 gi|325547296|gb|EGD18364.1| tyrosine recombinase XerC subunit [Xanthomonas gardneri ATCC 19865]
          Length = 305

 Score = 96.3 bits (238), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 38/259 (14%), Positives = 78/259 (30%), Gaps = 23/259 (8%)

Query: 89  VNSRISFESYFDQIIRKSGD------------FDYRKITTKHIRSGVESRKHTPSSAIQF 136
              R    +       + G+                    +   +    R  +P S  + 
Sbjct: 23  DAYRRDLAALVSWAAEQKGEDGAPLDAALLDSAQLTSAQLRQFVAAEHRRGLSPKSLQRR 82

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WSEGSQPR 193
           L++ R  + W ++   +A +P  ++  PK   +  +    ++  +          G + R
Sbjct: 83  LSACRSYYAWLLKHGRIAASPAAAMRAPKAPRKLPQVLDADEAVRLVEVPTDAPLGLRDR 142

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPD----GFMKLLAMT 248
              E    SGLR S+ C    + L      +     G     V +         + L  +
Sbjct: 143 ALLELFYSSGLRLSELCALRWRDLDLESGLVMVLGKGEKQRLVPVGPHAITALREWLRDS 202

Query: 249 PIGKET-FFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAH 305
               ET  F       ++     I  K  A + G+  +   H +R   A+   ++     
Sbjct: 203 GGRAETHVFPGRAGGAISQRAVQIRIKQLAVRQGMFKDVHPHMLRHSFASHILESSGDLR 262

Query: 306 ELMATYGWKTVDQAETYTK 324
            +    G   +   + YT 
Sbjct: 263 GVQELLGHSDIATTQIYTH 281


>gi|291559720|emb|CBL38520.1| Site-specific recombinase XerD [butyrate-producing bacterium SSC/2]
          Length = 363

 Score = 96.3 bits (238), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 49/338 (14%), Positives = 104/338 (30%), Gaps = 38/338 (11%)

Query: 41  STFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD 100
             F   +  A+  +T  R  I           +LI E   +  + + +V       S  D
Sbjct: 26  PPFAKEFFRAIDSTTQVRTRIAYAYDLRVFFHFLIDE---NPAYRNYSVLDFKV--SDLD 80

Query: 101 QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
           +I     +     +         +  ++T     + ++++R  + +  +++ +  NP L 
Sbjct: 81  KIESVDLEEYMEYLKVYISEEQHKHMQNTEQGVFRKMSALRSFYGYFYKRQLIEKNPTLL 140

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEG----------------SQPRLAFEFLLYSGL 204
           V+ PK + + I     +++     F   G                 +       LL +G+
Sbjct: 141 VDMPKIREKEIIRLEADEVASLLDFVEHGGDHLTGQKLAYYEKTKERDLAIITLLLGTGI 200

Query: 205 RCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK---------- 252
           R S+     V  +   NN   +  +K    +TV   +     L     G           
Sbjct: 201 RVSELVGLNVDDVDFRNNGLHLI-RKGRKEMTVYFGNEVADALEQYIEGSRKLIIPKEGH 259

Query: 253 -ETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMA 309
            +  F +  ++++         K  A +       + H +R    T         + +  
Sbjct: 260 EDALFYSMQRRRIGVQAVQNLVKKYAKEVTPLKKITPHKLRSTYGTALYQETDDIYLVAE 319

Query: 310 TYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVVDSD 346
             G   V+   + Y   +D  R        +   V  D
Sbjct: 320 VLGHSDVNTTRKHYAAMSDTRRRQAAGKVVLRESVSHD 357


>gi|218892832|ref|YP_002441701.1| putative bacteriophage integrase [Pseudomonas aeruginosa LESB58]
 gi|218773060|emb|CAW28872.1| putative bacteriophage integrase [Pseudomonas aeruginosa LESB58]
          Length = 338

 Score = 96.3 bits (238), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 46/313 (14%), Positives = 100/313 (31%), Gaps = 18/313 (5%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEY 78
           G+ +       G+R R  +         + + +     ++   N  ++    L  LI  +
Sbjct: 9   GRWLADVEPIKGKRFRKRF-KTKGEAQRFEAMVRTKHARQREWNPVQQDKRLLSELIERW 67

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQ 135
                    ++ S    ++    I  + GD   ++ TT  + +  +        P S   
Sbjct: 68  Y---ELHGHSITSGRRRKNLLLLIASRLGDPVGQRFTTADLVAFRKRELEEGALPRSINV 124

Query: 136 FLTSMRVLFKWAVRQEYVA-INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ-PR 193
             + ++ +F    R   +   NP   ++  K +   +   +K+ +    S   + S  P 
Sbjct: 125 RYSYLKTVFTELRRLGDIDYPNPLDRLKPLKPQQSVVSFLSKDQVAVLVSALRDYSTFPH 184

Query: 194 LAF--EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251
           LA   E  L +G R S++    +  +++        K+  + +V +       L     G
Sbjct: 185 LALISEVCLATGARWSEAQGLTLPMVRDGSVVFSNTKSKRVRSVPISTDLQARLEKYFAG 244

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATY 311
           +  F             F+   K         +  H +R   A+     G     L    
Sbjct: 245 RNRF-------PSCREAFARMVKRCGIVLPRGQCTHVLRHTFASHFMMNGGNILALKEIL 297

Query: 312 GWKTVDQAETYTK 324
           G  +++    Y  
Sbjct: 298 GHSSLNMTMRYAH 310


>gi|323152607|gb|EFZ38884.1| integrase [Escherichia coli EPECa14]
          Length = 371

 Score = 96.3 bits (238), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 42/278 (15%), Positives = 87/278 (31%), Gaps = 30/278 (10%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--K 127
           T+   I  Y+       ++ N+     +  + I  K G     +ITT+HI   ++     
Sbjct: 75  TMADWIERYKTILIRRKVSRNTYKIRVNQLETIKEKLGGVLLTEITTRHIAEFLDLWIEG 134

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----K 183
              + A    + +  +F+ A+ +  ++ NP      PK      R      ++ +    +
Sbjct: 135 GKNTMAGSMRSVLSDMFREAIVEGRISQNPVTPTRAPKIVVTRERL----KLKTYNCIRE 190

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
           +     +   LA +  L +G R  D        + ++   I+  KTG +I + L      
Sbjct: 191 AADQLPTWFPLAMDLALVTGQRREDITNMRFSEIYDDRLHIRQIKTGMMIAIPLSLSLPV 250

Query: 244 LLAMTPI--------GKETFFINNDKQKMN------ATQFSIWFKAKATKAGV-----NK 284
                           +  + I+   +K +          +  F A     G+       
Sbjct: 251 AGLRLGTVVEQCRMVSRGDYLISAGIRKNSPDGSIHPDGLTKKFVAARKLTGIQFSENPP 310

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           + H +R   A                 G  +    + Y
Sbjct: 311 TFHEIR-SLAGRLYKETCGEEFAQRLLGHTSEKTTKMY 347


>gi|255264826|ref|ZP_05344168.1| site-specific tyrosine recombinase XerC [Thalassiobium sp. R2A62]
 gi|255107161|gb|EET49835.1| site-specific tyrosine recombinase XerC [Thalassiobium sp. R2A62]
          Length = 304

 Score = 96.3 bits (238), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 45/289 (15%), Positives = 93/289 (32%), Gaps = 29/289 (10%)

Query: 71  LKWLISEYRKS-AHWGSLAVNSRISFESYFDQIIR--------KSGDFDYRKITTKHIRS 121
           L+  +  +  S A     + N+  ++++     +           G     +I    +R+
Sbjct: 6   LRDALEGWLASTAALNGTSENTTKAYQADVAGFLAFMTVHHGGAQGLGPISQICVSDMRA 65

Query: 122 GVESRKHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
            + S +    +A    + L++++  + W   +E       LS   PK + +  RP  ++ 
Sbjct: 66  WMASERGRGVAARSLARSLSAVKTFYCWFAEREGFEPTAVLSTRAPKFQKKLPRPLAEDA 125

Query: 179 -------MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
                  ++   +     ++       L   GLR S++     + +          K G 
Sbjct: 126 ARAMIDTVELQAAEPWVAARDMAVMTLLYGCGLRISEALGLCGRDVPLPQTLRILGKGGK 185

Query: 232 IITVELPDGFMKLLAMTPIG-------KETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284
              V +       +A                F       +N        +A   + G+  
Sbjct: 186 ERVVPVIPQACDAVAAYLRQCPYPVEPDAPLFRGVRGGALNPRAIQKVTEAARLQLGLPA 245

Query: 285 SA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           +A  H +R   AT    AG     +    G  ++   +TYT   D  RL
Sbjct: 246 TATPHAMRHSFATHLLSAGGDLRAIQELLGHASLSTTQTYT-AVDTARL 293


>gi|158522964|ref|YP_001530834.1| integrase family protein [Desulfococcus oleovorans Hxd3]
 gi|158511790|gb|ABW68757.1| integrase family protein [Desulfococcus oleovorans Hxd3]
          Length = 409

 Score = 96.3 bits (238), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 44/255 (17%), Positives = 84/255 (32%), Gaps = 18/255 (7%)

Query: 101 QIIRKSGDFDYRKITTKHIRS---GVESRKHTPSSAIQFLTSMRVLFKWAVRQE-YVAIN 156
            +    G+  + KI   H+      +  +K    +    L   R +F  A ++  Y   N
Sbjct: 137 HLAETIGNLPFGKIAAFHVERVKKAMADKKKAGRTIQYALQVTRQVFNMARKRGVYTGEN 196

Query: 157 PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQ 215
           P  +V+ PK     +R  + ++ ++     +  S          L+SGLR  +  +    
Sbjct: 197 PTSAVKWPKLDNMKMRYLSIDEAEKLFDALAAKSHNLHDMALLSLHSGLRFGEIAKLTWS 256

Query: 216 --HLQNNIFSIKTQKTGTIITVELPDGFMKLL-AMTPIGKETFFINNDKQKMNATQFSIW 272
             + +    +I   KTG+            L         E  F        +  + S  
Sbjct: 257 CVNWKAGTLAILDAKTGSRTAYLTTRAKAMLKNREEGAPNELIFQKRSGLDGSIARASKT 316

Query: 273 FKAKATKAGVNK---------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           F     + G+N+         + H +R   AT   ++    +    + G  T    + Y 
Sbjct: 317 FSRVVKELGLNQGITDRKQKVTFHTLRHSYATHLYESTHDLYLTQKSLGHTTSTMTQRYA 376

Query: 324 K-GADRIRLGIKNSR 337
           K   +R+R G     
Sbjct: 377 KMTENRLREGSAALE 391


>gi|160881628|ref|YP_001560596.1| integrase family protein [Clostridium phytofermentans ISDg]
 gi|160430294|gb|ABX43857.1| integrase family protein [Clostridium phytofermentans ISDg]
          Length = 443

 Score = 96.3 bits (238), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 54/403 (13%), Positives = 125/403 (31%), Gaps = 75/403 (18%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63
           SL LP  +T+      +  Y +    G R  L               L  +  + ++   
Sbjct: 53  SLNLPKGITRCSDGRYQARYTY---EGHRYCLYGRDVKELEER----LNNAKYEIQHGIY 105

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFES-YFDQIIRKSGDFDYRKITTKHIRS- 121
            +++  +L      +       ++   +  S+E  Y   +  + G    + I  +HI+  
Sbjct: 106 AKEERISLNAWYETWINEYKSMTVKQGTVESYECMYLYYVKPELGKRLIKDIRGEHIQKL 165

Query: 122 --GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK-TEGIRPWTKED 178
              +    ++ S+       +  +FK A++ E +  NP      P+ +  +  R  T ++
Sbjct: 166 YNDLSRNGYSKSTISLIHVLLGAMFKQALKNELIKKNPVDFTTLPRAERKKERRVLTLKE 225

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT--------- 229
            +      + G +        L +GLR  +        +  N   +  + T         
Sbjct: 226 QEILLKEIT-GHELEPVVRLSLATGLRVGEVTGLEWCDVDFNKKEVTVRGTLKCTRKGME 284

Query: 230 ---------GTIITVELPDGFMKLLAM----------------TPIGK--ETFFINNDKQ 262
                     +  ++ L D    +L                   PI    +  F+  D +
Sbjct: 285 YYKDTPKTDKSTRSIPLLDNMELMLKRYRIIQKEHKLSMGIDWKPIEGLEDLVFLREDGK 344

Query: 263 KMNATQFSIWFKAKATKAGVNK---------------------SAHGVRKFSATISADAG 301
             +     I  +      G+N+                     + H +R   AT + + G
Sbjct: 345 PFS--GQHIRQQLVHIVDGINEKYYSKKSIRQEKLLEEKFDYFTPHALRHTFATRALENG 402

Query: 302 ATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVV 343
                +    G  ++    + YT    + +   +  +++ S++
Sbjct: 403 IPPKVVQEILGHSSITMTLDLYTHVLPQTK--AQEMKKLESLI 443


>gi|320161781|ref|YP_004175006.1| putative site-specific recombinase [Anaerolinea thermophila UNI-1]
 gi|319995635|dbj|BAJ64406.1| putative site-specific recombinase [Anaerolinea thermophila UNI-1]
          Length = 288

 Score = 96.3 bits (238), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 48/270 (17%), Positives = 93/270 (34%), Gaps = 30/270 (11%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK-- 127
           T+K L+  + +S   G ++ ++   +  Y   ++   GD +   ITT  + +     +  
Sbjct: 8   TVKELVDVFLESQK-GFISDSTLRWYVFYLRPLVAHLGDRETNSITTSDLINLFHLMRTD 66

Query: 128 -HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
              P +   F+   + LF+WAV + Y+A+NP   + RP    +       ED+ +     
Sbjct: 67  DREPYTLFNFIRGWKRLFRWAVDEGYIAMNPAKKLRRPPLPQKSPAGIQAEDLSKMLDAA 126

Query: 187 SEGSQPRLAFEFLLY---SGLRCSDSCRAGVQHLQNN---IFSIKTQKTG---------T 231
           S+   P      +L+   +G+R        V  L  N      ++  + G         +
Sbjct: 127 SKTGTPERDLALVLFVADTGVRLGGVAGLTVDRLDINKRRAIVLEKGRGGQKERVVFFSS 186

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGV 289
              + L +   K         +  F+      +        FK  A K+ +    + H  
Sbjct: 187 RTAIALENWLEK---RGETEDQRVFL------LKPNGIYQLFKRLARKSEITGKWNPHSF 237

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQA 319
           R   A      G +   +    G   V   
Sbjct: 238 RHAYARKLLAEGVSIGIVSHLMGHSNVQVT 267


>gi|256841231|ref|ZP_05546738.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256737074|gb|EEU50401.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 354

 Score = 96.3 bits (238), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 43/290 (14%), Positives = 97/290 (33%), Gaps = 35/290 (12%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRK--------SGDFDYRKITTK---------- 117
            +Y+  A +     + R     +  +             G   + +I             
Sbjct: 70  DKYKLKADFL---EHYRKQLRKHDQKWEFVYLHFNNFVHGKCTFEEIDIDLCNKFREYLL 126

Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
             +      + T +SA  + ++ R   K   R   +  N    +++ + +       + +
Sbjct: 127 TAKKLRRKGRITRNSASGYWSTFRGFLKILYRNGMIKTNVNDFLDKIETEDVVKEYLSVD 186

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-----QNNIFSIKTQKTGTI 232
           ++ +      +    ++A  F   + LR SD      + +           I TQK    
Sbjct: 187 ELYKLAETPCKKPILKIASLFSCMTSLRISDILALCWEDIVDYSAGGKCVHIITQKNKAE 246

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290
             + + +  + L+  +   K   F     + +  +   I  K     AG+ K  + H  R
Sbjct: 247 DIIPISEEALGLIGYSSEKKGLVF-----KGLMRSWTQIPMKEWIRSAGITKNITFHSYR 301

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
           +  AT+ A AG     + +    K++   + Y K  D  +   + S++I+
Sbjct: 302 RTFATLQAAAGTDIRTIQSIMAHKSITTTQRYIKVVDANKR--EASKKIT 349


>gi|257055038|ref|YP_003132870.1| tyrosine recombinase XerC subunit [Saccharomonospora viridis DSM
           43017]
 gi|256584910|gb|ACU96043.1| tyrosine recombinase XerC subunit [Saccharomonospora viridis DSM
           43017]
          Length = 329

 Score = 96.3 bits (238), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 30/229 (13%), Positives = 67/229 (29%), Gaps = 21/229 (9%)

Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
           +   +       + ++  + + S R    WA R+  +  +P + +  P+           
Sbjct: 83  RAWLARQHEAGCSRATVARRVASARTFTAWAYRRGLLPSDPGIRLASPRPHRRLPGVLRM 142

Query: 177 EDMQQFKSF--------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
           ++  +                 +     E L  +G+R S+ C   +  +  +   ++   
Sbjct: 143 DEATELMRVSEAGTATGHPVALRDHALIELLYATGVRISELCGLDIDDVDFDRRVVRVLG 202

Query: 229 TGTIITV-----ELPDGFMKLLA------MTPIGKETFFINNDKQKMNATQFSIWFKAK- 276
            G    +              L        T       F+    ++++            
Sbjct: 203 KGRKQRMVPFGLPSERALRLWLRQGRPEVATADSGAALFLGARGKRVDPRTVRRVVHDAV 262

Query: 277 -ATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            A     +   HG+R  +AT   D GA    +    G  T+   + YT 
Sbjct: 263 AAVPGAADIGPHGLRHSAATHMLDGGADLRSVQELLGHATLATTQLYTH 311


>gi|189467538|ref|ZP_03016323.1| hypothetical protein BACINT_03928 [Bacteroides intestinalis DSM
           17393]
 gi|189435802|gb|EDV04787.1| hypothetical protein BACINT_03928 [Bacteroides intestinalis DSM
           17393]
          Length = 333

 Score = 96.3 bits (238), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 48/244 (19%), Positives = 90/244 (36%), Gaps = 20/244 (8%)

Query: 105 KSGDFDY---RKITTKHIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPC 158
             GD +    +K     + +      + P   +SA  + ++ R L K A R ++   N  
Sbjct: 92  TFGDVNVDLCKKFREYLLNAKQLKHSNRPISLNSASGYYSTFRGLLKIAYRDKWFRENIN 151

Query: 159 LSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL- 217
             +++ + +       T ++++Q  +   +    + A  F   +GLR SD      +   
Sbjct: 152 DYLDKIEPQDVKKEYLTLDEVKQLAATPCDIPVLKAASLFACLTGLRISDILNLQWEDFT 211

Query: 218 ----QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF 273
               Q     I+TQKT T  T+ +     + L  TP   + F      + +  +  +   
Sbjct: 212 IAPDQGYCLRIRTQKTQTEATLPISYEAYE-LCGTPGTGKVF------KDLKRSMINYPL 264

Query: 274 KAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           K+   KAG+ K  + HG R   A I    G   + +      K V   + Y    +  + 
Sbjct: 265 KSWLKKAGITKPITFHGFRHSYAVIQISLGTDIYTVSKMLTHKNVSTTQIYADLVNSKKR 324

Query: 332 GIKN 335
              N
Sbjct: 325 ETAN 328


>gi|293393584|ref|ZP_06637894.1| phage integrase family site-specific recombinase [Serratia
           odorifera DSM 4582]
 gi|291423919|gb|EFE97138.1| phage integrase family site-specific recombinase [Serratia
           odorifera DSM 4582]
          Length = 335

 Score = 96.3 bits (238), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 50/305 (16%), Positives = 98/305 (32%), Gaps = 21/305 (6%)

Query: 26  RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG 85
           R G   R R     E+     Y+ A              R     L      Y ++   G
Sbjct: 29  RNGKRIRRRFEKKQEAVLFERYVLANADKKEWLGASVDRRTLSELLDTWWLLYGQTQENG 88

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI---RSGVESRKHTPSSAIQFLTSMRV 142
            +        + + ++ IR  GD    +++ + I   R        + ++  + +     
Sbjct: 89  EIE-------KRHLNKTIRALGDPAVNRLSKRTIAQHRGQRLEDGISAATINRDVYRFSG 141

Query: 143 LFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201
           +F   ++  E+   NPC  +E  K     +    K ++ +  +  + G   R+A    L 
Sbjct: 142 MFSTLIKLDEFRKENPCKGLEPLKETPPAMTYLAKSEISRLLNTLT-GDDRRVAL-LCLS 199

Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK 261
           +G R  +S     + + +   +    K G   TV + +     +  +  G    F     
Sbjct: 200 TGARWGESSTLRGEQVNHGRVTFLKTKNGKKRTVPISEELEGEIKTSDTG--PLF----- 252

Query: 262 QKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
            K++   F    K         ++ H +R   A+     G     L    G  ++ Q   
Sbjct: 253 -KVDYENFCERLKQVKPDLPRGQATHVLRHTFASWFMMNGGNIIALQQILGHASIQQTMV 311

Query: 322 YTKGA 326
           Y   A
Sbjct: 312 YAHLA 316


>gi|261344170|ref|ZP_05971814.1| site-specific recombinase, phage integrase family [Providencia
           rustigianii DSM 4541]
 gi|282567765|gb|EFB73300.1| site-specific recombinase, phage integrase family [Providencia
           rustigianii DSM 4541]
          Length = 338

 Score = 96.3 bits (238), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 45/316 (14%), Positives = 98/316 (31%), Gaps = 35/316 (11%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87
            +G+R+R           A+   L   + ++ ++   ++    L  L+  + ++     +
Sbjct: 20  RNGKRVR-KLFTTKGEAIAFERYLLEESQEKPWLG-EKQDKRKLTELVETWFRA---HGI 74

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH------------TPSSAIQ 135
            +      +S         GD    +   K      E R              TP +   
Sbjct: 75  TLGDGKKRKSSMLFACEAMGDPLAIEFNAKIFSIYREKRLSGEIVRTDRLKTVTPRTVNL 134

Query: 136 FLTSMRVLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
            L   R +F   +R  E+   +P   V   K   + +   + ++++   S   + +   L
Sbjct: 135 ELAYFRAMFNELIRLDEWTKEHPLAKVRSYKTDEQEMGFLSDDEIRLLLSECEKSTSKDL 194

Query: 195 A--FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252
               +  L +G R S++       ++NN  +    K     ++ + D     L       
Sbjct: 195 IHVVKICLATGARWSEAENLTATQIRNNTITYVRTKGKRNRSIPISDELANELPKGQGNN 254

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNK----SAHGVRKFSATISADAGATAHELM 308
             F                 F++   + G+      S+H +R   A+    +G     L 
Sbjct: 255 RLF-----------KSCYSAFRSALERTGIELPKQQSSHVLRHTFASHFMMSGGNILVLQ 303

Query: 309 ATYGWKTVDQAETYTK 324
              G   +     Y+ 
Sbjct: 304 RILGHTDIKMTMRYSH 319


>gi|9910723|sp|P76168|INTQ_ECOLI RecName: Full=Putative lambdoid prophage Qin defective integrase
          Length = 385

 Score = 96.3 bits (238), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 45/317 (14%), Positives = 97/317 (30%), Gaps = 64/317 (20%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK-ITTKHIRSGVESR-- 126
           T+K L  ++        +A  S  ++ +    I+   G+ +    I  + +    +    
Sbjct: 39  TIKELAEKFLALKE-TEVAKTSLNTYRAVIKNILSIIGEKNLASSINKEKLLEVRKELLT 97

Query: 127 --------------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
                           +  +   ++T++  +F++ V   Y+A NP   +   K       
Sbjct: 98  GYQIPKSNYIVTQPGRSAVTVNNYMTNLNAVFQFGVDNGYLADNPFKGISPLKESRTIPD 157

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK----- 225
           P ++E+  +         Q +  +   +Y+G+R  + C  G + +   N    I+     
Sbjct: 158 PLSREEFIRLIDAC-RNQQAKNLWCVSVYTGVRPGELCALGWEDIDLKNGTMMIRRNLAK 216

Query: 226 --------TQKTGTIITV--ELPDGFMKLLAMTPIGKETFF------------------- 256
                      T  +I +     D     + +T + KE                      
Sbjct: 217 DRFTVPKTQAGTNRVIHLIKPAIDALRSQMTLTRLSKEHIIDVHFREYGRTEKQKCTFVF 276

Query: 257 -------INNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELM 308
                  + N             + A   +AG+ ++ ++  R   A  S  AGA    + 
Sbjct: 277 QPEVSARVKNYGDHFTVDSIRQMWDAAIKRAGLRHRKSYQSRHTYACWSLTAGANPAFIA 336

Query: 309 ATYGWKTVDQA-ETYTK 324
              G        + Y K
Sbjct: 337 NQMGHADAQMVFQVYGK 353


>gi|325263946|ref|ZP_08130679.1| site-specific recombinase, phage integrase family [Clostridium sp.
           D5]
 gi|324030984|gb|EGB92266.1| site-specific recombinase, phage integrase family [Clostridium sp.
           D5]
          Length = 355

 Score = 96.3 bits (238), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 43/281 (15%), Positives = 90/281 (32%), Gaps = 43/281 (15%)

Query: 100 DQIIRKSGDFDYRKITTKHIRSGVESRK-----------HTPSSAIQFLTSMRVLFKWAV 148
           +  + +    D  +I    I    E  K           +T     + ++++R  + +  
Sbjct: 71  NYTVDQFTVKDLERIEPVDIEEYQEYLKVYKGSEDKQITNTEKGLARKMSALRSFYAYFF 130

Query: 149 RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG----------------SQP 192
           + + +  NP L V+ PK   + I     +++     +   G                ++ 
Sbjct: 131 KHQVIEKNPTLLVDMPKLHDKAIIRLDTDEVASLLEYVEHGGDDLTGQRKVYFEKTKNRD 190

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLL------ 245
                 LL +G+R S+     +Q +   N     T+K G  + V   +     L      
Sbjct: 191 LAILTLLLGTGIRVSECVGLDIQDVDFKNNGVKVTRKGGNEMVVYFGEEVENALKMYLYT 250

Query: 246 -----AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISA 298
                A  P  +   F++  ++++         K  A +   NK  + H +R    T   
Sbjct: 251 TRKSTAPLPGHENALFLSTQRKRIGVQAVENMVKKYARQITPNKKITPHKLRSTYGTALY 310

Query: 299 DAGATAHELMATYGWKTVDQA-ETYTK-GADRIRLGIKNSR 337
                 + +    G K V+   + Y     +R R      +
Sbjct: 311 KETGDIYLVADVLGHKDVNTTKKHYAAIDENRRRQAAGAVK 351


>gi|53712520|ref|YP_098512.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|52215385|dbj|BAD47978.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
          Length = 419

 Score = 96.3 bits (238), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 35/254 (13%), Positives = 81/254 (31%), Gaps = 22/254 (8%)

Query: 95  FESYFDQIIRKSGD-FDYRKITTKHIRSGVESRKHTP-----------SSAIQFLTSMRV 142
           +    + +   +G+   + KI  +            P           ++A  + +  + 
Sbjct: 153 WRRTHELLKIFAGEYLPFSKIDNRLAEDFRMFMLSAPCGGKKSGTVSQNTAATYFSIFKA 212

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202
             K A   +Y+ ++    ++  + +       T E++    S   E    + +  F   +
Sbjct: 213 ALKQAFIDDYLTVDLSAKIKGIQEQESRREYLTVEELNMLASTPCERDVLKRSALFSALT 272

Query: 203 GLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFIN 258
           GLR  D  +   + +  +          QKT  +  + + +  ++L       ++  F +
Sbjct: 273 GLRHCDIQKLRWKEISMDGNQARLHFTQQKTKGVEYMPISEQALQLCGERRKPEQLVFED 332

Query: 259 NDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTV 316
                  +     W       AG+ K    H  R   AT+   +    + +    G   V
Sbjct: 333 LPDPAWISKPLKKWV----ESAGIKKKITYHCFRHTFATLQLSSSTDIYTVSKMLGHTNV 388

Query: 317 DQAETYTKGADRIR 330
              + Y K  D  +
Sbjct: 389 KTTQIYAKVVDEKK 402


>gi|293572845|ref|ZP_06683798.1| DNA integration/recombination/invertion protein [Enterococcus
           faecium E980]
 gi|291607092|gb|EFF36461.1| DNA integration/recombination/invertion protein [Enterococcus
           faecium E980]
          Length = 380

 Score = 96.3 bits (238), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 55/309 (17%), Positives = 114/309 (36%), Gaps = 40/309 (12%)

Query: 50  ALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGD 108
           AL     + E     ++KP T K +   +       ++  ++ +  E  F + ++ + GD
Sbjct: 48  ALARLQSEYENNLLKKEKPKTYKDVYDLWMTEYK-RTVRGSTLLKTERIFKNHVLEELGD 106

Query: 109 FDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168
               +IT   I+  ++   +   +A + +    ++FK+AVR   +  NP  ++ +PKR+ 
Sbjct: 107 IYISEITPIKIQKLMDKWANKYDTAPKMMNYTGLVFKYAVRFGIIESNPTDAIRKPKRRK 166

Query: 169 EGIRPWTKEDMQQFKSFWSE-----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----- 218
           +        D +Q K F          + +  F  L  +G+R  ++     + +      
Sbjct: 167 KTTTEEPFYDKKQLKLFLDVLYEQPNIKVQAFFRLLAMTGMRKQEAGALEWRDIDFKAKT 226

Query: 219 ----------NNIFSIKTQKT-GTIITVEL----PDGFMKLLAMTPIGKETFFI---NND 260
                      N   I T KT G+   + +     D  ++   +     + + I    N 
Sbjct: 227 VNIYKAVTRTANGLEIDTTKTVGSSRIISIDQGTLDKLLEWKEVALPPSDDWLIFGQTNA 286

Query: 261 KQK---MNATQFSIWF------KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMAT 310
           K     M+      W         K  K  + + + HG R   A++  + GA+  E+   
Sbjct: 287 KNPHDIMSLDTSRKWLLNIQDQMDKKQKKKLPRITVHGFRHTQASLLIEMGASLKEVQFR 346

Query: 311 YGWKTVDQA 319
            G + +   
Sbjct: 347 LGHEDIQTT 355


>gi|190571372|ref|YP_001975730.1| site-specific recombinase, phage integrase family [Wolbachia
           endosymbiont of Culex quinquefasciatus Pel]
 gi|213018771|ref|ZP_03334579.1| site-specific recombinase, phage integrase family [Wolbachia
           endosymbiont of Culex quinquefasciatus JHB]
 gi|190357644|emb|CAQ55088.1| site-specific recombinase, phage integrase family [Wolbachia
           endosymbiont of Culex quinquefasciatus Pel]
 gi|212995722|gb|EEB56362.1| site-specific recombinase, phage integrase family [Wolbachia
           endosymbiont of Culex quinquefasciatus JHB]
          Length = 328

 Score = 96.3 bits (238), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 51/310 (16%), Positives = 105/310 (33%), Gaps = 53/310 (17%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVE---- 124
           +  L+SE        S   N+  S+ S   Q+ +    G       +  +I+  V     
Sbjct: 19  IDALVSE-------KSSTQNTLESYRSDLHQLEKFLLEGGTTLVGASKANIKDYVNFLRT 71

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC----LSVERPKRKTEGIRPWTKEDM- 179
            +K+  SS  + +++++  +K       +  NP       +  PK      +  + +++ 
Sbjct: 72  QKKYKTSSISRKISAIKNFYKCLFNDGIIDFNPAPANDNELRNPKVSRPLPKYLSVQEIF 131

Query: 180 ---QQFKSFW----SEGSQPRLA--FEFLLYSGLRCSDSCRAGVQHL--------QNNIF 222
              +  K        E S  RL    + L  SG+R S+     +  +        +    
Sbjct: 132 LLMETVKKSASGSNKEISSKRLCAILDILYSSGMRVSELINMKLCEVLHLVNGNGKEGYI 191

Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK-----------QKMNATQFSI 271
            IK  K+     +   +  ++ L      ++    NN K           + +   +   
Sbjct: 192 IIK-GKSSRERQILFNEQALQSLKNYLSIRDNLLPNNKKSDWLFPGDKPNKPITRQRVGQ 250

Query: 272 WFKAKATKAGVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
             K  A K  +++   S H +R   AT   ++GA    +    G   +   + YT  A+ 
Sbjct: 251 LIKELARKCDIDENKISPHVIRHSLATHLLNSGANIVLIQKILGHTNLSTTQIYTHIANE 310

Query: 329 I---RLGIKN 335
               +L   +
Sbjct: 311 KLKDKLADSH 320


>gi|160894953|ref|ZP_02075727.1| hypothetical protein CLOL250_02503 [Clostridium sp. L2-50]
 gi|156863384|gb|EDO56815.1| hypothetical protein CLOL250_02503 [Clostridium sp. L2-50]
          Length = 583

 Score = 96.3 bits (238), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 50/341 (14%), Positives = 109/341 (31%), Gaps = 38/341 (11%)

Query: 10  FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
           F+  + TR    I+Y  +    + R+                       + +  P+ +  
Sbjct: 233 FIETDETRWDATIWYLERFRIAKERINQSDSIE------------KISFQEVLQPKNRL- 279

Query: 70  TLKWLISEYRK-SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128
               L+ EY K     G LA+++           +++  + +  K     I   +++ ++
Sbjct: 280 ----LLQEYMKYEIGIGELALSTVYERFRTIRNFLQEISELEVTKCDASLIDVYLKNLQN 335

Query: 129 TPSSAIQF---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED---MQQF 182
               A  F   ++ ++   K+   + Y+   P  +    +++       + E+   M+  
Sbjct: 336 GAMGAKTFNTNVSGIQFFMKFLEVKGYIKKVPFYASYYLEKQIPVHHDRSVEEDVYMEII 395

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELP 238
           ++        R+ F  L   GLR S+ C            +    +   K      V +P
Sbjct: 396 QNLSQFPEHLRMMFLHLWCVGLRISEVCTLKGDAYYIQNGDCWMKVYQVKMKNYKRVPIP 455

Query: 239 DGFMKLLAMT----PIGKETFFINND-KQKMNATQFSIWFKAKATKAGVNK-----SAHG 288
               +L+ +     P  KE +   N      + + F    K   ++ G+        +H 
Sbjct: 456 VTLYRLMQVYLKKHPTEKEAYIFRNRKGGAFSKSTFMGQMKKYCSQIGIQNGEYIFKSHD 515

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            R   AT   + G +   +    G    +    Y     R 
Sbjct: 516 YRHTVATNFYEHGVSIQSIRDYLGHMFEEMTMQYIDYMPRK 556


>gi|314955500|gb|EFS99903.1| site-specific recombinase, phage integrase family
           [Propionibacterium acnes HL027PA1]
          Length = 420

 Score = 96.3 bits (238), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 58/373 (15%), Positives = 116/373 (31%), Gaps = 51/373 (13%)

Query: 23  YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSA 82
           +Y + G  +R+R      +         L            PR    TL   ++ +  + 
Sbjct: 27  FYDKNGTKQRVRGRGATRAEATKRLNKNLRQRIDGTRTATGPRGGL-TLNQWVNIWLATK 85

Query: 83  HWGS-LAVNSRISFE-SYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA-IQFLTS 139
                +   +    +  Y   I  K G    +++T + I+  + +      +  +    +
Sbjct: 86  QASEQMKPQTAQQHKIRYKQWIAPKLGSRPVKRLTAEEIQEVIAAGAQQGHAIPVNIFKT 145

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEG-------IRPWTK--EDMQQFKSFWSEGS 190
           M      AV+   V +NP   +  P++++         I  W++  + M ++ +      
Sbjct: 146 MNAALNSAVKAGEVDLNPMKQLTPPRQRSAAGEKDTAHIEYWSRIMDKMCKWLAQPECEL 205

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQ---------------KTGTII 233
             R      +  GLR ++             N  +IK Q               KTG   
Sbjct: 206 HDRYTLTIAMLLGLRRAELLGLTWDCFDECMNKLTIKQQLMRQNDGSYIIQNSTKTGKNR 265

Query: 234 TVELPDGFMK---------LLAMTPIGKETFFINNDKQKMNATQFSIWFKA----KATKA 280
           T+ LP+ + +         L A  P      F+      +  + ++  ++        K 
Sbjct: 266 TLMLPERWKEAFLLQRQKSLTAAAPEWNNLVFLTPAGGPITYSMYNKLWRNTIVTYMAKE 325

Query: 281 GVNKSA--H-----GVRKFSATISADAGATAHELMATYGWKTVDQAETYT-KGADRIRLG 332
           G       H       RK  A+  A  G      M+  G  +      YT   AD+ R  
Sbjct: 326 GQEWKEEQHYWRPPTCRKMCASWLAWGGVDIQTAMSILGHSSEAMTLYYTIINADQQRKA 385

Query: 333 IKNSRRISSVVDS 345
           ++    +    + 
Sbjct: 386 LEGLSNVYEHHNV 398


>gi|298249757|ref|ZP_06973561.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
 gi|297547761|gb|EFH81628.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
          Length = 297

 Score = 96.3 bits (238), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 41/275 (14%), Positives = 96/275 (34%), Gaps = 29/275 (10%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
             LI+ +         A  ++ ++  +  + +   G   ++ I    ++    S +    
Sbjct: 17  ANLINTWL-----HDKAQTTQRAYRRFAYEYLTALG-KPFQMIAPLELKQYAMSLEGDAG 70

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK-RKTEGIRPWTKEDMQQFKSFWSEGS 190
           +    + +++ L+ +A +  Y+ +N    +E PK R+    R   +++M +  +      
Sbjct: 71  TVAYRVNALKSLYSYATKLGYIQVNLGELLEAPKVRQKLAERILEEDEMLRLVAG-ETNP 129

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQ----NNIFSIKTQKTGTIITVELPDGFMKLLA 246
           +       + ++GLR S+      +++              K      V +    ++ L 
Sbjct: 130 RNHATLRLMYHAGLRVSEIVSLKWENIHKTKSGGATLDVWGKGEEQRYVPISPSMLEELE 189

Query: 247 MTP----------IGKETFFINNDKQKMNATQFSIW-----FKAKATKAGV--NKSAHGV 289
             P          +G + +     K K  +            +  A + G+  N S H  
Sbjct: 190 ALPGRLPLLTRSTVGNDRYVFQGRKSKGGSIPLDTRHVHRIVQEAAKRVGIEDNVSPHWF 249

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           R  +A+ S D GA    +  + G K++     Y  
Sbjct: 250 RHANASHSLDNGAPISVVQQSLGHKSLATTMKYLH 284


>gi|229051739|ref|ZP_04195198.1| Phage integrase [Bacillus cereus AH676]
 gi|228721643|gb|EEL73128.1| Phage integrase [Bacillus cereus AH676]
          Length = 387

 Score = 96.3 bits (238), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 50/354 (14%), Positives = 105/354 (29%), Gaps = 48/354 (13%)

Query: 13  KERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
             R R  K  Y  R     + +               A      K     + +    T  
Sbjct: 3   SFRKRKDKWEYRIRYKEMGKYKETSKGGFKTKKEAQLAAAKVEEKLATGGNLKDSKITFN 62

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
             + E+  +   G++A  + + +E      I+   G+   + +T    +  +       S
Sbjct: 63  EYLYEWLNTYKKGNVAPRTYMVYEKNIRLHILPAFGELRLKDLTRIKYQKFINGLMEKYS 122

Query: 132 SAIQFLTSMRVLFKWAVR-----QEYVAINPCLSVE----RPKRKTEGIRPWTKEDMQQF 182
              + + ++ V    A+         +  NP   ++    R   K + I+ +  +++QQF
Sbjct: 123 K--KTVETINVTMHHALDIAVNELGILEKNPTSKIKLRTTRVTSKDDEIKCYDIDELQQF 180

Query: 183 KSF---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI----------KTQK- 228
            ++      G +    F FL  +GLR  +      + +      +          +++K 
Sbjct: 181 LNYVLKEKGGFKYFSLFMFLSRTGLRIGECLALQWEDVDFEEQKLFINKTLINTKRSEKI 240

Query: 229 -------TGTIITVELPDGFMKLLAMTPIGKET--------------FFINNDKQKMNAT 267
                    +  T+ L    +  L    I +                 F + D   M   
Sbjct: 241 LFGPPKNKSSKRTISLDPSTISHLKKMKIEQNKQVLKNGKYYKDYNFVFTHEDNSCMLHP 300

Query: 268 QFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
               +    + K      + HG R   A     +GA    +    G  ++D   
Sbjct: 301 SSLKFLLEASKKGNFKYITLHGFRHTHAVHLLQSGANIKYVSERLGHSSIDMTA 354


>gi|169824446|ref|YP_001692057.1| site-specific tyrosine recombinase XerC [Finegoldia magna ATCC
           29328]
 gi|302380744|ref|ZP_07269209.1| site-specific tyrosine recombinase XerC [Finegoldia magna
           ACS-171-V-Col3]
 gi|167831251|dbj|BAG08167.1| integrase [Finegoldia magna ATCC 29328]
 gi|302311687|gb|EFK93703.1| site-specific tyrosine recombinase XerC [Finegoldia magna
           ACS-171-V-Col3]
          Length = 326

 Score = 96.3 bits (238), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 36/204 (17%), Positives = 71/204 (34%), Gaps = 17/204 (8%)

Query: 140 MRVLFKWAVRQEYVAI-NPCLSVERPKRKTEGIRPWTKED------MQQFKSFWSEGSQP 192
           +R  +K+ +    + I NP   ++ PK+        T ++      +   +      S+ 
Sbjct: 101 IRTFYKYLINIRKLDIINPAELLDSPKKNIRQPVYLTLDESLDLLKVILREKDEEIKSRD 160

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA-----M 247
                  L  G+R S+     + H++ N   +   K     TV L D  +  +       
Sbjct: 161 YCITVLFLNCGMRLSELSSINIDHIKTNTLRVI-GKGNKERTVYLNDMCLDAIDNYLKIR 219

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG-AT 303
             I  +  FI+  + +M+        +      G +    S H +R  +AT+    G   
Sbjct: 220 PEIDNDALFISKKRNRMSNRAIQYRIEHYLKIGGFDTSIYSVHKLRHTAATLMYQYGNVD 279

Query: 304 AHELMATYGWKTVDQAETYTKGAD 327
              L    G ++V   + YT   +
Sbjct: 280 IKVLQEILGHESVSTTQIYTHVDN 303


>gi|320668198|gb|EFX35057.1| Site-specific recombinase, phage integrase family protein
           [Escherichia coli O157:H7 str. LSU-61]
          Length = 203

 Score = 96.3 bits (238), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 75/209 (35%), Gaps = 18/209 (8%)

Query: 6   RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
           +LPP V   +        Y  K   R        ES  + A    L     K E   + R
Sbjct: 12  KLPPKVYPNK------YSYVWKPTSR--------ESVTLTAIEDGLAALWKKYEETVNHR 57

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
            +  T   L  ++  SA++  L+  ++  +  +  +++   G      +  +HIR  ++ 
Sbjct: 58  DRAMTFGRLWEKFLASAYYSELSPRTQKDYLQHQKKLLAVFGKVLADSVKPEHIRRYMDK 117

Query: 126 RKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
           R   + + A    +SM  ++ W   + YV  NPC  V + K K       T ++ Q   S
Sbjct: 118 RGEQSKTQANHEKSSMSRVYSWGYERGYVKANPCAGVSKFKAKNRERYV-TDKEYQAVLS 176

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAG 213
                    +A E       R SD     
Sbjct: 177 VAPL--PVFIAMEIAYLCAARVSDVLSLK 203


>gi|310816481|ref|YP_003964445.1| integrase [Ketogulonicigenium vulgare Y25]
 gi|308755216|gb|ADO43145.1| integrase [Ketogulonicigenium vulgare Y25]
          Length = 333

 Score = 96.3 bits (238), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 58/337 (17%), Positives = 102/337 (30%), Gaps = 33/337 (9%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           R R G  + +     GRR         T   A   ++         +        T+  +
Sbjct: 8   RLRGGYCVTWTDPDGGRRRYKLDATTPTEAEAEARSIFHQAAAARAL--------TVSDI 59

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
            S YRK           R       D    I+   G  +  +ITT+  R  VE R+    
Sbjct: 60  WSAYRK-------DKAGRRIDHHMIDTGKTILPVFGALEPHQITTQDCRDYVEKRRAIGR 112

Query: 132 ---SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
              +    L  +R    WA +   +   P   +ERP   +   R  ++ ++ +  S   +
Sbjct: 113 KDGTIRTELGHLRTSLSWAEKHRMIEHAP--HIERPAMPSPKERYLSRAEIDRLLSVDGD 170

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTG---TIITVELPDGFMK 243
               RLA   +L +  R           +       +++ +  G       V + +    
Sbjct: 171 P-HIRLAILLMLTTAGRVGAILELTWDRVDMIRGQINLRLEGEGPRKGRAVVPINNTLRA 229

Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGA 302
            L        + F+               F+    KAG+   + H +R  +A    +AG 
Sbjct: 230 ALVAAKAHAMSEFVVEYAGGQIG-SIKTGFRNACAKAGLKGVTPHVLRHTAAVHMVEAGV 288

Query: 303 TAHELMATYGWKTVDQA-ETYTK-GADRIRLGIKNSR 337
              E+    G         TY +   D +R       
Sbjct: 289 PILEVAQYLGHSNPSVTFSTYGRFSPDHLRKAADALE 325


>gi|207724061|ref|YP_002254459.1| integrase/recombinase protein [Ralstonia solanacearum MolK2]
 gi|206589270|emb|CAQ36232.1| integrase/recombinase protein [Ralstonia solanacearum MolK2]
          Length = 310

 Score = 96.3 bits (238), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 39/300 (13%), Positives = 88/300 (29%), Gaps = 25/300 (8%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD 110
           +     + +          T+  L++ Y    H    A + R  ++   + I     +F+
Sbjct: 1   MLERLAEEKRKIEVDATERTMSRLVAIYMA-KHAKDYAESYRDEWKRRGETIRTAFRNFE 59

Query: 111 YRKITTKHIRSGV-ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
             ++        + E+    P++       +   F WAVR++++ +NP   V+  K+   
Sbjct: 60  IEQVDAAACEDFLTENWHDKPTTQKAMKAWLSGFFSWAVRRKHLQVNPVREVK-IKKPPR 118

Query: 170 GIRPWTKEDMQQFK---------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-- 218
                T       +              G   ++  +    +  R ++        +   
Sbjct: 119 RTVYITSAHFVAIRDALAMAADGKKTPTGPMMQVFVDLCYLTCQRSTEIRNLRWADIDWS 178

Query: 219 NNIFSIKTQKT----GTIITVELPDGFMKLLAMT----PIGKETFFINNDKQKMNATQFS 270
             +      KT    G  +   +      +L       PIG +    +   +        
Sbjct: 179 ARLIRFVPTKTEDSSGEAVDWPITPEIEAVLHRAKKLEPIGGDYVVRDKHGKPKTTAACR 238

Query: 271 IWFKAKATKAGV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
             +     +AG+     +   +R  + T +  AG     L            E Y K  +
Sbjct: 239 DAWNDAKMRAGLRDTKYTVKDIRAQALTDAKKAGYDIEALQVAGAHSDRATTEGYIKQRE 298


>gi|169628813|ref|YP_001702462.1| putative phage integrase [Mycobacterium abscessus ATCC 19977]
 gi|169240780|emb|CAM61808.1| Putative phage integrase [Mycobacterium abscessus]
          Length = 416

 Score = 96.3 bits (238), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 48/317 (15%), Positives = 105/317 (33%), Gaps = 44/317 (13%)

Query: 50  ALTGSTPKREYINSPRKKPTT---LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS 106
           AL      R  I S +   ++   L+  ++ + ++     +   +   +E+     I   
Sbjct: 84  ALDKLRDLRSAIRSGKSPTSSKVHLEQWLNHWLETIQKPRVRPTTYKYYETTVRLYILPF 143

Query: 107 --GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP 164
             G     K+T   +R  +   K+   +A +   ++      A+ +  +  N    V++P
Sbjct: 144 IDGRTQLGKLTPAQVRKMIA--KNGTRNAQKAHQTLVKALGDAMDEGMLDKNVAAVVDKP 201

Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQ--HLQNNI 221
           K      +P+T ++ +Q  +   + + P    +  + ++G R  +          L+  +
Sbjct: 202 KHVAIERQPFTFDEARQIIATAIKRNDPWATMWAAMFFTGARQGEIIGMEWDRCDLEKGL 261

Query: 222 FSIKTQ--------------------------KTGTIITV-ELPDGFMKLLAM------T 248
           F    Q                          KT     V  +      ++         
Sbjct: 262 FDFSWQLQQLPPELPRGFKHRPCHLSLAWTKPKTKAGARVAPMTKPLQAIMEAYAKTDTG 321

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHEL 307
           P      + + D   ++ T  S  ++A    A V  +S H  R  +AT+  +AG +    
Sbjct: 322 PNPHGLVWRHPDGHPISPTDASDAWRALVKAADVPYRSMHSARHTTATLLNNAGVSQETR 381

Query: 308 MATYGWKTVDQAETYTK 324
           M   G  +    + Y  
Sbjct: 382 MKVVGHSSAVAQQIYVH 398


>gi|116254087|ref|YP_769925.1| site-specific tyrosine recombinase XerD [Rhizobium leguminosarum
           bv. viciae 3841]
 gi|115258735|emb|CAK09841.1| putative tyrosine recombinase [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 317

 Score = 96.3 bits (238), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 50/274 (18%), Positives = 85/274 (31%), Gaps = 34/274 (12%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTK-----HIRSGVESRKHTPSSAIQFLTS 139
              A N+  S+E   D +     +   R             S +  +   PSS  + L +
Sbjct: 20  RGAAANTLQSYERDLDDVRSFLTERSIRLTEAASTDLAAYLSSLARKGFKPSSQARRLAA 79

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-------GSQP 192
           MR  +K+   +   A +P   ++ PK+     +    E++ +  S           G   
Sbjct: 80  MRQFYKFLYAEGLRADDPTGILDAPKKGRPLPKTMGVEEVGRLLSRAEAEAEDPAPGQLQ 139

Query: 193 RLAFEFL----LYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLA- 246
           RL    L      +G+R S+      + L     F +   K      V L    +  L  
Sbjct: 140 RLRMLALLELLYATGMRVSELVSLPARVLDQEGRFLMIRGKGNKERLVPLSQSAISALKS 199

Query: 247 ------------MTPIGKETFFINNDKQKM-NATQFSIWFKAKATKAGVN---KSAHGVR 290
                         P      F +  K+       F+   K  A +AG+     S H +R
Sbjct: 200 YGRLLAVENAAVKEPQESPWLFPSASKEGYLPRQVFARDLKNLAIRAGLTPSLISPHVMR 259

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              A+     GA    +    G   +   + YT 
Sbjct: 260 HAFASHLLANGADLRVVQELLGHSDISTTQIYTH 293


>gi|32471281|ref|NP_864274.1| integrase [Rhodopirellula baltica SH 1]
 gi|32396983|emb|CAD71953.1| integrase [Rhodopirellula baltica SH 1]
          Length = 348

 Score = 96.3 bits (238), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 48/314 (15%), Positives = 94/314 (29%), Gaps = 50/314 (15%)

Query: 52  TGSTPKREY------INSPRKKPTTL--KWLISEYRKSAHWGSLAVNSRISFESYFDQII 103
           + + P++E         SP+  P     + L     +  H    A  +   +     Q+ 
Sbjct: 25  SATPPEKETNMSNSSSKSPQNAPGAHFPESLRLRLSEDLHLTGKAKRTHDGYIRAVRQLS 84

Query: 104 RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS----MRVLFKWAVRQEYVAINPCL 159
             +G     ++T +H+R      K+  + A   L      ++  F    ++++       
Sbjct: 85  DFAG-CSPDQVTEQHVRQFFLHLKNDRNFAYGSLRVAFSGIKFFFTHTCKRDW------E 137

Query: 160 SVERPKRK--TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS----GLRCSDSCRAG 213
            ++  K +  T      T   ++Q        +  R       ++    GLR +++    
Sbjct: 138 IIKMLKLQNITTLPEVLT---IEQVHELIGSATTQR--MFVYFWTVYSLGLRLNEALHLQ 192

Query: 214 VQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAM--TPIGKETFFINNDKQ------- 262
           V  +        +   K      V LP   ++LL          +F    D +       
Sbjct: 193 VSDIDAERGWVHVHRGKGAKDRYVPLPTTTVRLLRNYWASHRHPSFLFPADGRKHDLAKD 252

Query: 263 -------KMNATQFSIWFKAKATKA--GVNKSAHGVRKFSATISADAGATAHELMATYGW 313
                   M+ T      K        G   S H +R   AT   +AG     +    G 
Sbjct: 253 GVSEATTPMSETAVQGAMKQITKNLRFGKKVSIHTLRHSYATHLLEAGVGLKVIQKYLGH 312

Query: 314 KTVDQAETYTKGAD 327
            ++     Y    D
Sbjct: 313 SSLQTTMVYLHLTD 326


>gi|298531269|ref|ZP_07018669.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298508879|gb|EFI32785.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
          Length = 394

 Score = 96.3 bits (238), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 37/237 (15%), Positives = 82/237 (34%), Gaps = 20/237 (8%)

Query: 108 DFDYRKITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWA-VRQEYVAINPCLSVERP 164
           D   + +   H+ + +  R  K+ P + I   + +R   ++  + ++ +  +    ++ P
Sbjct: 143 DMGLKDLDVLHMDAFLAERNRKYAPETRIHERSGLRGFLRYLYLERQILKKDLSALIQGP 202

Query: 165 --KRKTEGIRPWTKEDMQQFK----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL- 217
               ++   R  T E ++            G +           GLR  + CR  +  + 
Sbjct: 203 PVYAQSRPPRFLTLEQIKTLFQSIDKDRPGGLRSYAMIHLAYSLGLRPGEICRVTLDDIL 262

Query: 218 -QNNIFSIKTQKTGTIITVELPDGFMKLL-------AMTPIGKETFFINNDK--QKMNAT 267
            ++ +  +  +K  +   + LP G ++ L            G      N       +   
Sbjct: 263 FRDKLIYLPDRKNSSPAKLPLPQGALRALAAYLAWNRPMDPGHRFLLCNTRTPYGPLTPL 322

Query: 268 QFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             S    A   +AG+  SA+ +R   A     A A+  E+    G   +  ++ Y  
Sbjct: 323 TVSQNISACFRRAGIKGSAYWLRHTYAQNLLQAEASIFEIKEMLGHDIIKTSKRYLH 379


>gi|291438313|ref|ZP_06577703.1| phage integrase [Streptomyces ghanaensis ATCC 14672]
 gi|291341208|gb|EFE68164.1| phage integrase [Streptomyces ghanaensis ATCC 14672]
          Length = 389

 Score = 96.3 bits (238), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 57/348 (16%), Positives = 104/348 (29%), Gaps = 39/348 (11%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEY 78
           G+    +    G     P+  E+T       A   +  +R     P       +    ++
Sbjct: 20  GRYQARYPGPDGVMRPAPFTFETTADADDWLAEKQTEIRRGEWRDPEAGAVGFRAYADKW 79

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR------KHTPSS 132
            +      LA  +R  +    D+ +    D D  +IT   +R     R      K   + 
Sbjct: 80  VEE---RELAPLTRDLYRYLLDKHLTAFADLDLDEITAPRVREWRAERLRITGAKTITAK 136

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
           A + L ++      AV  E +  NPC      K K    R  T   +       + G + 
Sbjct: 137 AYRLLKAIMET---AVDDELIQRNPCRIKGAGKEKAAERRIATVAQVDALAD--AVGMRW 191

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--------------TQKTGTII---TV 235
           RL      Y  +R  +      + +  +   ++                 T +     TV
Sbjct: 192 RLMVYLGAYGPMRPEELAGLRRRDVDVDNLRVRIRLAEPERMNGRRVQGDTKSEAGTRTV 251

Query: 236 ELPDGFMKLLA------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287
            LP    + L         P      F+         + F   ++      G+ K    +
Sbjct: 252 ILPAFLRRELRWHLESYAEPGPDGLVFVGEKGAPFRRSTFGRKWRRAREVVGMPKGFRFY 311

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335
            +R    T+S  +GAT  + M   G  +   A  Y    +  +  +  
Sbjct: 312 DLRHTGHTLSTRSGATLKDTMVRAGQSSEKAALIYQHSDEERQEEVAA 359


>gi|238760428|ref|ZP_04621566.1| Int [Yersinia aldovae ATCC 35236]
 gi|238701323|gb|EEP93902.1| Int [Yersinia aldovae ATCC 35236]
          Length = 284

 Score = 96.3 bits (238), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 40/258 (15%), Positives = 85/258 (32%), Gaps = 17/258 (6%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI---RSGVESRK 127
           L  L+  +    H  +L   +    + +  + +   GD    ++T + +   RS   +  
Sbjct: 19  LSDLVETWWL-YHGQNLKNGTIE--KRHLMKTLTALGDKVVSQLTKRELMEHRSQRLADG 75

Query: 128 HTPSSAIQFLTSMRVLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            + ++  + L  +  +F   ++ +E+   NP   +     K  G+     E++ +  +  
Sbjct: 76  ISAATINRDLYRLSGMFSALIKIEEFSGQNPQHGLPPLAEKNPGMTFLDTEEINRLLAVL 135

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
           S     RL     L +G R  +        + NN  +    K G   T+ +     + + 
Sbjct: 136 S--GDERLIALLCLSTGGRWGEVSTLTAAQVVNNRVTFLETKNGKKRTIPISAELQEEVK 193

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHE 306
               GK   F  +  +      F    +         ++ H +R   A+     G     
Sbjct: 194 TNASGK--LFKVDYGK------FCETLRMVKPDLPRGQATHVLRHTFASHFMMNGGNIIA 245

Query: 307 LMATYGWKTVDQAETYTK 324
           L    G   + Q   Y  
Sbjct: 246 LQQILGHANIQQTMAYAH 263


>gi|260062369|ref|YP_003195449.1| tyrosine type site-specific recombinase [Robiginitalea biformata
           HTCC2501]
 gi|88783932|gb|EAR15103.1| tyrosine type site-specific recombinase [Robiginitalea biformata
           HTCC2501]
          Length = 386

 Score = 96.3 bits (238), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 52/321 (16%), Positives = 109/321 (33%), Gaps = 30/321 (9%)

Query: 34  RLPYPHESTFI------PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87
            LP P+ +  +        Y+ +  G   K     +    PT    L+  YR+       
Sbjct: 48  HLPDPNHAKGLIRHLREAGYIVSGQGEVEKFRERLAREANPT----LLDTYRQFLRGRRY 103

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----SRKHTPSSAIQFLTSMRVL 143
           + ++  S+ +   Q +   G+    K       + ++     RK + S+  Q +++++ L
Sbjct: 104 SESTIASYGTMAAQFLEFLGEKPPEKADQTDAEAFLQWLVLERKVSVSTHRQAISALKQL 163

Query: 144 FKW--AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201
             +  A   E         +  P++  +      K ++ +     +   + R     L  
Sbjct: 164 EAFLPACHLE------AKGLVSPRKDRKLPGVLGKAEVMRLLQQ-TRNLKHRTLTALLYG 216

Query: 202 SGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLL---AMTPIGKETFF 256
            GLR  +     +  +        ++  K      V LP+  + LL              
Sbjct: 217 CGLRVGELINLQLAEVDIPRRQLLVRAGKGRKDRRVVLPERLLPLLGDYLTAYAPSRYLA 276

Query: 257 INNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWK 314
                Q+ +AT    + KA + +AG+    + H +R   AT   + G     +    G  
Sbjct: 277 EGRPGQQYSATSIRAFLKANSRRAGILKKVTPHMLRHSYATHLLEQGVDIRYIQELLGHA 336

Query: 315 TVDQAETYTKGADRIRLGIKN 335
             +    YT  + +  L I++
Sbjct: 337 RPETTMVYTHVSRQDLLDIQS 357


>gi|291615497|ref|YP_003522605.1| integrase family protein [Nitrosococcus halophilus Nc4]
 gi|291582559|gb|ADE17015.1| integrase family protein [Nitrosococcus halophilus Nc4]
          Length = 310

 Score = 96.3 bits (238), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 43/247 (17%), Positives = 86/247 (34%), Gaps = 30/247 (12%)

Query: 115 TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
           T + +   +  R        +  + +   +KWA++   V  +P    ++PKR        
Sbjct: 59  TEQFVAWQMRERGTKAHIVARRSSCLGSFYKWAMKNALVESDPIYLADKPKRPYRIPIWL 118

Query: 175 TKEDMQQFKSF-----------------WSEGSQPRLAFE--FLLYSGLRCSDSCRAGVQ 215
            KE+   F+                     +  + R  F    +L SGLR S++    ++
Sbjct: 119 EKEEQLAFQEAVRRVDDLPENIFGRPREHIKAIRRRYDFLFGLILNSGLRISEALAVKIR 178

Query: 216 HLQ---NNIFSIKTQKTGTI-ITVELPDGFMKLLAM---TPIGKETFFINNDK-QKMNAT 267
            ++       S++    G     V LP+ F ++         G +  F      +     
Sbjct: 179 DVRIVNGVAKSVRVIGKGNRERLVPLPEAFGQVFGAWLQGRGGDDFVFAKAPGEKPPGPH 238

Query: 268 QFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
               + +    +AG++K  + H +R   AT   +AGA   ++    G   +   + YT  
Sbjct: 239 AVRTYLRRLIERAGIDKPVTPHKLRHTYATRLLEAGAELVDIQVLLGHVDLSTTQIYTH- 297

Query: 326 ADRIRLG 332
               R+ 
Sbjct: 298 VSEERMA 304


>gi|222150480|ref|YP_002559633.1| integrase [Macrococcus caseolyticus JCSC5402]
 gi|222119602|dbj|BAH16937.1| integrase [Macrococcus caseolyticus JCSC5402]
          Length = 388

 Score = 96.3 bits (238), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 51/297 (17%), Positives = 108/297 (36%), Gaps = 55/297 (18%)

Query: 91  SRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVR 149
           +  S ES F  +I+ K G    ++I+  + ++ V        +   ++   R++F +A++
Sbjct: 87  TLASKESKFKSRILPKFGRIPIKEISRVYCQTVVNEWSKEMKAFNDYVIQARLVFNYAMK 146

Query: 150 QEYVAINPCLSVERPKRKTEG------IRPWTKEDMQQFKSFWSEG--SQPRLAFEFLLY 201
            E +  NP   +  P R  +        +  TKE+++QF  +  E   +Q    F  L +
Sbjct: 147 LELIDKNPMEYITLPSRLEDKVFVEQSRKFLTKEELKQFMIYLEEENKTQNTCLFRLLAF 206

Query: 202 SGLRCSDSCRAGVQHLQ---------------NNIFSIKTQKTG-TIITVELPD------ 239
           +G+R  +        +                NN   ++  KT  +   +++ +      
Sbjct: 207 TGMRKGEVLALHWSDINFVNKDLYVKKTLAKVNNKHVLQPPKTRESQRWIDIDNQTISKL 266

Query: 240 ---------GFMKLLAMTPIGKETFFINNDKQKMNA----------TQFSIWFKAKATKA 280
                     + +        KE    +    ++N            +   +FK  +   
Sbjct: 267 LQWKEEQKLQYEEYGFSVASDKEQPIFSTYHTRLNEMKYMRVSTPNDKLEAFFKRHSDLH 326

Query: 281 GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK--GADRIRLGIK 334
            ++   HG R   A++  ++GAT  E+    G   +    + YT    + R +L  K
Sbjct: 327 KIH--VHGFRHTHASLLFESGATLKEVQTRLGHSDIKTTMDIYTHITQSSREKLADK 381


>gi|154492472|ref|ZP_02032098.1| hypothetical protein PARMER_02106 [Parabacteroides merdae ATCC
           43184]
 gi|154087697|gb|EDN86742.1| hypothetical protein PARMER_02106 [Parabacteroides merdae ATCC
           43184]
          Length = 406

 Score = 96.3 bits (238), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 52/265 (19%), Positives = 96/265 (36%), Gaps = 26/265 (9%)

Query: 84  WGSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRSGVE-----------SRKHTPS 131
           +  LA    I ++  +    R  +G   + ++     R  +E           ++K   +
Sbjct: 134 FKELADRKNIKWQHVYKHFERFVNGKCTFEEVDVDLCRKFMEYLLNAPQSIHTNQKLHIN 193

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           SA  + ++ R +   A R + +  NP   ++R +         ++E++ +      E   
Sbjct: 194 SAAGYWSAFRAVLHTAYRDKKIKENPNGFLDRIECIPTMREHLSQEELIRLAETPCEEDV 253

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQ---NNIFSIKT--QKTGTIITVELPDGFMKLLA 246
            + AF F   +GLR SD  +   Q +Q   N    + T  QKT  I+   + D    LL 
Sbjct: 254 LKRAFLFACLTGLRKSDIRQLTWQQIQPYTNGKMFVTTRMQKTKQIVHNPISDEAYGLLG 313

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATA 304
               G    F     +           K     AG+ K  + H  R    ++  + G   
Sbjct: 314 ERHEG--LIF-----EGFKDKMLQGPLKRWLLAAGITKKITFHCTRHSFGSLHVEMGTDM 366

Query: 305 HELMATYGWKTVDQAETYTKGADRI 329
             + A  G K +   + Y+K A + 
Sbjct: 367 AVIQAYMGHKNITTTQIYSKMAAQQ 391


>gi|118463716|ref|YP_881470.1| phage-related integrase [Mycobacterium avium 104]
 gi|118165003|gb|ABK65900.1| phage-related integrase [Mycobacterium avium 104]
          Length = 402

 Score = 96.3 bits (238), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 40/283 (14%), Positives = 93/283 (32%), Gaps = 27/283 (9%)

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122
           +PR    T++     + +   +      +     ++  QI+ + GD    ++    +++ 
Sbjct: 80  APRDAKLTVQQWCDTWIE--GYKVHREGTVREARTHIRQIVTEFGDTPLTQVRPSQVKAW 137

Query: 123 VESRKHTPSSAIQFL---TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
               +     A       + +  +   AV    +  NPC     P      +   T E +
Sbjct: 138 TARLRADGMKASYIYALHSRLSQIMADAVHDGVLGRNPCSRRTAPPMGKAKVYVATTEQV 197

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ------KT-G 230
                  +     ++A     ++GLR ++     V  +     +   K Q      KT G
Sbjct: 198 WAL--HDAVPDHLKVAVLLGAFAGLRVAEVSGLRVSDVDFIRGVVHPKQQWSDKPLKTEG 255

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA---GVNK--- 284
           +   + +P     LL+ +        +  +   +   +   W   +A +    G++    
Sbjct: 256 SSAPIPIPQDLALLLSASVQKYPAEMMVTNG--LGTDRCGPWIIERAIRDVRRGIDGLPE 313

Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
             S H +R + A++    G     + A     +     +TY+ 
Sbjct: 314 GFSFHDLRHYLASLLIARGCDVKTVQARLRHSSAKTTLDTYSH 356


>gi|15808369|gb|AAL08410.1|AF252852_3 unknown [Prevotella loescheii]
          Length = 418

 Score = 96.3 bits (238), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 71/208 (34%), Gaps = 10/208 (4%)

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           + ++A  + +  +   K A    Y+ I+    ++  + +       T +++ +  +   E
Sbjct: 199 SRNTASTYFSIFKAALKQAFIDGYLTIDLSAKIKGIQEQESRREYLTLDELNKLANTPCE 258

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI----FSIKTQKTGTIITVELPDGFMKL 244
               + A  F   +GLR  D  +   + +             +KT  +  + + +   KL
Sbjct: 259 RDVLKRAALFSALTGLRHCDIQKLRWKEIAIEGNQAKLLFTQKKTKGVEYMPISEQAFKL 318

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302
                  ++  F         +       +A   KAG+ K  S H  R   AT+    G 
Sbjct: 319 CGEPRQPEQLVFEGLPNPSWISRPL----RAWIEKAGIQKHLSFHCFRHTFATLQLANGT 374

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIR 330
             + +    G   V   + Y K  D  +
Sbjct: 375 DIYTVSKMLGHTNVKTTQVYAKVVDEKK 402


>gi|294789961|ref|ZP_06755178.1| xylulose-5-phosphate/fructose-6-phosphate phosphoketolase
           [Simonsiella muelleri ATCC 29453]
 gi|294482099|gb|EFG29809.1| xylulose-5-phosphate/fructose-6-phosphate phosphoketolase
           [Simonsiella muelleri ATCC 29453]
          Length = 315

 Score = 95.9 bits (237), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 44/248 (17%), Positives = 89/248 (35%), Gaps = 14/248 (5%)

Query: 92  RISFESYFDQIIRKSGDFDYR-----KITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKW 146
           +   +S  D I R       R      +  K I   V     + S+  ++L  +R +   
Sbjct: 32  KQDKKSIEDDICRIRQLTALRGRYLQDLDRKTIMKVVSELPCSNSTKNRYLALIRSILNK 91

Query: 147 AV-RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLR 205
            V   ++++  P   +   K   + IR    ++ Q+    +      +    F L +GLR
Sbjct: 92  CVNEWDWLSKAP--KLTLYKEPKKRIRWLKPQEAQKLVHAFENLPYMQHMIIFSLVTGLR 149

Query: 206 CSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK 261
            ++      + +              K    + V L    +++LA+        F N+  
Sbjct: 150 QNNVLNLKWEQIDLKRRIAWIYPDETKNSQALGVPLNQVALQVLAVRQKTTPFVFNNSKG 209

Query: 262 QKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
           Q + A    IW +    +AG+ N   H +R   A+    +G     L    GW++++  +
Sbjct: 210 QPVKAVSHRIW-RKGLKEAGISNFKWHDLRHTWASWLVQSGVPLLALKEMGGWESLEMVQ 268

Query: 321 TYTKGADR 328
            Y   + +
Sbjct: 269 KYAHLSSQ 276


>gi|317056716|ref|YP_004105183.1| integrase family protein [Ruminococcus albus 7]
 gi|315448985|gb|ADU22549.1| integrase family protein [Ruminococcus albus 7]
          Length = 335

 Score = 95.9 bits (237), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 34/251 (13%), Positives = 87/251 (34%), Gaps = 16/251 (6%)

Query: 111 YRKITTKHIRSGV-ESRKHTPSSAIQFLTSMRVLFKWA-VRQEYVAINPCLSVERPKRKT 168
            R I        + + R ++  +  +  ++++  + +  +++  +  +P   +E PK   
Sbjct: 75  LRLIDAYDYLKWLADERSNSVKTRARKTSALKQFYSYLYLKKNSIPSDPLTQLELPKLPK 134

Query: 169 EGIRPWTKEDMQQFKSFW--SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226
              +  + ED Q+  S        +        L  G+R S+ C   +        +I+ 
Sbjct: 135 TLPKYLSLEDAQRLLSSIESDHFERDYCMITLFLNCGMRLSELCGLDIGDFSFESGTIRL 194

Query: 227 QKTGTIIT--------VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKAT 278
              G            +     ++ +       ++  F++N   +++  +     +    
Sbjct: 195 FGKGQKERVVYINQACIAALKAYLPIRLSVQTQEKALFLSNRNTRISRRRTQEIVEESLK 254

Query: 279 KAGVN---KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGADRIRLGIK 334
           KAG+     + H +R  +AT+    G      L    G +++   E YT  ++       
Sbjct: 255 KAGLGNLGITTHKLRHTAATLMYQYGNVDTLVLKDILGHESLATTEIYTHLSNENLKQAA 314

Query: 335 NSRRISSVVDS 345
            +  +S    +
Sbjct: 315 EANPLSGQKAN 325


>gi|298388102|ref|ZP_06997647.1| integrase [Bacteroides sp. 1_1_14]
 gi|298259132|gb|EFI02011.1| integrase [Bacteroides sp. 1_1_14]
          Length = 382

 Score = 95.9 bits (237), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 46/275 (16%), Positives = 99/275 (36%), Gaps = 26/275 (9%)

Query: 90  NSRISFE---SYFDQIIRK---SGDFDYRKITTKHIRSGVESRKH----TPSSAIQFLTS 139
            +   +E    Y ++ I+K     D     +    I       K       +SAI  L +
Sbjct: 108 KTVQRYETTTRYLEEFIKKEYQLSDIALNNLEANFISKFDAFLKIEKGCAQNSAITRLKN 167

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLAF 196
           ++ + + A+  +++  +P  +  R K +       T ++++   +         Q R  F
Sbjct: 168 LKKIIRIALENDWIKKDP-FAYYRFKLEETDPEFLTMDEIKIILAKEFTIKRVEQVRDVF 226

Query: 197 EFLLYSGLRCSDSCRAGVQH-LQNN----IFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251
            F +++GL  SD      +H +++N          QKT  +  + +      +L      
Sbjct: 227 VFCIFTGLAFSDVKDLSPEHLVKDNKGELWIRKNRQKTKIMCNIPVLPVAASILDKYKDV 286

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS-ADAGATAHELM 308
            E          +   + + + K  A   G++K  S H  R   AT      G +   + 
Sbjct: 287 AE--CTGKLLPVLCNQRMNSYLKEIADVCGIHKNLSTHTARHSYATSICLANGVSMENVA 344

Query: 309 ATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343
              G    +  + Y +  D+     K+ ++++S +
Sbjct: 345 KMLGHADTNVTKHYARVLDQN--IFKDMQKVNSCL 377


>gi|190893726|ref|YP_001980268.1| tyrosine site-specific integrase/recombinase protein [Rhizobium
           etli CIAT 652]
 gi|190699005|gb|ACE93090.1| tyrosine site-specific integrase/recombinase protein [Rhizobium
           etli CIAT 652]
          Length = 311

 Score = 95.9 bits (237), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 45/278 (16%), Positives = 85/278 (30%), Gaps = 29/278 (10%)

Query: 82  AHWGSLAVNSRISFESYFDQIIRKS-GDF-------DYRKITTKHIRSGVESRKHTPSSA 133
           A    L+ ++  ++E    Q +    G         D R++     R+ + +R+   S A
Sbjct: 24  ARERRLSEHTLDAYERDTRQFLTFLTGHLAGPVTLSDIRELRPADFRAFLAARRKQGSGA 83

Query: 134 IQF---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM-------QQFK 183
                 L  +R L +   ++  V      ++  PK+     +P +            Q  
Sbjct: 84  RSLGRNLAGLRSLLRHLEKKGLVNAAGAAAIRSPKQPKSLPKPLSDTQAITVVSNEAQLH 143

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFM 242
                 ++       L   GLR S++       L     +++ T K      V L     
Sbjct: 144 DEPWIAARDAAVMTLLYGCGLRISEALDLVPADLPKGATTLRITGKGNKTRLVPLLPVVF 203

Query: 243 KLLAMTPI-------GKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFS 293
           + +                 F      K+ A       +   +  G+    + H +R   
Sbjct: 204 EAVEKYRALCPYHLENDAPLFRGARGGKLQAAIIQRAMQKLRSAFGLPETATPHALRHSF 263

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           AT     G     +    G  ++   + YT G D  RL
Sbjct: 264 ATHLLAGGGDLRTIQELLGHASLSTTQVYT-GVDASRL 300


>gi|160945174|ref|ZP_02092400.1| hypothetical protein FAEPRAM212_02693 [Faecalibacterium prausnitzii
           M21/2]
 gi|158442905|gb|EDP19910.1| hypothetical protein FAEPRAM212_02693 [Faecalibacterium prausnitzii
           M21/2]
          Length = 402

 Score = 95.9 bits (237), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 37/239 (15%), Positives = 80/239 (33%), Gaps = 19/239 (7%)

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKED----MQQ 181
            +  SS  + L S+   + + V Q   ++ +P  ++  PK+     +  T E     ++ 
Sbjct: 101 GNKKSSTARRLASLHGFYDYLVNQVNRLSEDPTAAIRPPKQDKVLPKYLTAEQSISLLES 160

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240
            ++      +        L  G+R ++     +  +      I+   K      V L + 
Sbjct: 161 TQTQSDFPERDYCMVVLFLNCGMRLAELVGMDLGDIDLEQRQIRLFGKGHKERMVYLNNA 220

Query: 241 FMKLLAM-----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHG 288
            ++ L +           +P  K  F     K++++  +           AG+   S H 
Sbjct: 221 CVEALQLYLRKRNTMEGLSPKEKAVFITRMRKERISNRRVEQLISGAMKAAGLKGFSTHK 280

Query: 289 VRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346
           +R  +AT+    G      L    G  +V   + YT   +           +  V+  +
Sbjct: 281 LRHTAATLMYQTGNVDILTLKQLLGHSSVGTTQIYTHLQEFQVRSAIEENPLGKVLPIN 339


>gi|320534120|ref|ZP_08034661.1| putative site-specific tyrosine recombinase XerD [Actinomyces sp.
           oral taxon 171 str. F0337]
 gi|320133699|gb|EFW26106.1| putative site-specific tyrosine recombinase XerD [Actinomyces sp.
           oral taxon 171 str. F0337]
          Length = 222

 Score = 95.9 bits (237), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 65/201 (32%), Gaps = 26/201 (12%)

Query: 150 QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-----SEGSQPRLAFEFLLYSGL 204
           +   + +P  +V  P+      +    ++++               + R   E L  +G 
Sbjct: 3   EGTTSEDPSATVRPPQPGRRLPKALGIDEVRLLLEAAGVDDSPVSLRDRALLEVLYATGA 62

Query: 205 RCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVEL-------PDGF----MKLLAMTPIGK 252
           R S++    +  L  +   ++   K      V +        D +      +LA    G 
Sbjct: 63  RISEAVGLVIDDLDTDSRLLRLFGKGRKERVVPMGTYAWEALDAYLVRGRPVLAEKGRGV 122

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGV---------NKSAHGVRKFSATISADAGAT 303
              F+N   + ++        +  A +AG+           S H +R   AT     GA 
Sbjct: 123 PQVFLNTLGRPLSRQSAWAVLQQAAERAGLIGVDSADRRRISPHTLRHSFATHLLAGGAD 182

Query: 304 AHELMATYGWKTVDQAETYTK 324
              +    G  +V   + YTK
Sbjct: 183 VRVVQEMLGHASVTTTQIYTK 203


>gi|256367608|ref|YP_003108167.1| shufflon-specific DNA recombinase [Escherichia coli]
 gi|331660225|ref|ZP_08361160.1| shufflon-specific DNA recombinase [Escherichia coli TA206]
 gi|228480863|gb|ACQ42189.1| shufflon-specific DNA recombinase [Escherichia coli]
 gi|321271555|gb|ADW79644.1| IncI1 shufflon-specific DNA recombinase Rci [Escherichia coli]
 gi|331052492|gb|EGI24528.1| shufflon-specific DNA recombinase [Escherichia coli TA206]
          Length = 384

 Score = 95.9 bits (237), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 47/282 (16%), Positives = 94/282 (33%), Gaps = 27/282 (9%)

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
           + SPR +  +L   + +Y K+               +   +        +  +ITT  I 
Sbjct: 1   MPSPRIRKMSLSRALDKYLKTVSVHKKGHQQEFYRSNVIKRY--PIALRNMDEITTVDIA 58

Query: 121 SGVESR----------KHTPSSAIQFLTSMRVLFKWA-VRQEYVAINPCLSVERPKRKTE 169
           +  + R            T ++    L  +  LF  A V       NP   V +PK  + 
Sbjct: 59  TYRDVRLAEINPRTGKAITGNTVRLELALLSSLFNIARVEWGTCRTNPVELVRKPKVSSG 118

Query: 170 GIRPWTKEDMQQFKSFWSE-GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKT 226
             R  T  + ++   ++ E      + F   L + +R  +      +H+     +  +  
Sbjct: 119 RDRRLTSSEERRLSRYFREKNLMLYVIFHLALETAMRQGEILALRWEHIDLRHGVAHLPE 178

Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM--NATQFSIWFKAKATKAGV-N 283
            K G    V L       L M P       +N         A+ F   ++    +  + +
Sbjct: 179 TKNGHSRDVPLSRRARNFLQMMP-------VNLHGNVFDYTASGFKNAWRIATQRLRIED 231

Query: 284 KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTK 324
              H +R  + +   + G     E+ A  G ++++  + YT 
Sbjct: 232 LHFHDLRHEAISRFFELGSLNVMEIAAISGHRSMNMLKRYTH 273


>gi|255530752|ref|YP_003091124.1| integrase family protein [Pedobacter heparinus DSM 2366]
 gi|255343736|gb|ACU03062.1| integrase family protein [Pedobacter heparinus DSM 2366]
          Length = 294

 Score = 95.9 bits (237), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 38/272 (13%), Positives = 94/272 (34%), Gaps = 27/272 (9%)

Query: 85  GSLAVNSRISFESYF---DQIIRKSGDFDYRKITTKHIRS---GVESRKHTPSSAIQFLT 138
              + ++  S+++        ++++ +    ++   HIR+    +   + + +S  + L+
Sbjct: 14  KRYSSHTIQSYQTDLLQFTDFMQQTFELPLTEVKYVHIRNFIVALMEDEISENSVGRKLS 73

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE-------DMQQFKSFWSEGSQ 191
           ++R  +K+ +R+  ++ NP   V+ PK        +  E       D ++F        +
Sbjct: 74  ALRSFYKYLLRENVLSSNPMALVKAPKVPKRLP-VFVDEGKLDLLLDSEEFFDGSFPSLR 132

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMK------- 243
            +   E L  +G+R ++        +     +I+   K      V +     +       
Sbjct: 133 DKTVIETLFGTGIRLAELLSLKETDINFYESTIRVMGKRSKERIVPIGKTLREQFRVYME 192

Query: 244 --LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKA--TKAGVNKSAHGVRKFSATISAD 299
              L          F+ +              +           KS H +R   AT   +
Sbjct: 193 LKTLQNFDNKTTMLFVTDKGAAAYPKLIYRTVQRYLTYVSTQDKKSPHVLRHSYATSLLN 252

Query: 300 AGATAHELMATYGWKTVDQAETYTK-GADRIR 330
            GA  + +    G  ++   + YT    +R++
Sbjct: 253 RGADLNAIKELLGHASLAATQVYTHNSVERLK 284


>gi|327252692|gb|EGE64346.1| phage integrase family protein [Escherichia coli STEC_7v]
          Length = 426

 Score = 95.9 bits (237), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 45/317 (14%), Positives = 97/317 (30%), Gaps = 64/317 (20%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK-ITTKHIRSGVESR-- 126
           T+K L  ++        +A  S  ++ +    I+   G+ +    I  + +    +    
Sbjct: 80  TIKELAEKFLALKE-TEVAKASLNTYRAVIKNILSIIGEKNLASSINKEKLLEVRKELLT 138

Query: 127 --------------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
                           +  +   ++T++  +F++ V   Y+A NP   +   K       
Sbjct: 139 GYQIPKSNYIVTQPGRSAVTVNNYMTNLNAVFQFGVDNGYLADNPFKGISPLKESRTIPD 198

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK----- 225
           P ++E+  +         Q +  +   +Y+G+R  + C  G + +   N    I+     
Sbjct: 199 PLSREEFIRLIDAC-RNQQAKNLWCVSVYTGIRPGELCALGWEDIDLKNGTMMIRRNLAK 257

Query: 226 --------TQKTGTIITV--ELPDGFMKLLAMTPIGKETFF------------------- 256
                      T  +I +     D     + +T + KE                      
Sbjct: 258 DRFTVPKTQAGTNRVIHLIKPAIDALRSQMTLTRLSKEHIIDVHLREFGRTEKQKCTFVF 317

Query: 257 -------INNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELM 308
                  + N             + A   +AG+ ++ ++  R   A  S  AGA    + 
Sbjct: 318 QPEVSARVKNYGDHFTVDSIRQMWDAAIKRAGLRHRKSYQSRHTYACWSLTAGANPAFIA 377

Query: 309 ATYGWKTVDQA-ETYTK 324
              G        + Y K
Sbjct: 378 NQMGHADAQMVFQVYGK 394


>gi|302343665|ref|YP_003808194.1| integrase family protein [Desulfarculus baarsii DSM 2075]
 gi|301640278|gb|ADK85600.1| integrase family protein [Desulfarculus baarsii DSM 2075]
          Length = 397

 Score = 95.9 bits (237), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 53/370 (14%), Positives = 119/370 (32%), Gaps = 44/370 (11%)

Query: 12  TKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
            +E+ +     + F    G+R +     +          +  +    ++I      P T 
Sbjct: 5   VREKVKGSGAWWVFVNHDGKR-KSKLVGDKKAAKEAARKIEAALASGKFIVEDEAMP-TF 62

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
             L  E+       +   ++   ++    + I+R+ G     +IT   I+  +  +  + 
Sbjct: 63  GELAKEWIALTVPATCKASTLKDYQRLLANHILRRFGSKPVDQITRLMIKDFLLQKGKSG 122

Query: 131 ---SSAIQFLTSMRVLFKWAVRQEYVAINPC----LSVERPKRKTEGIRPWTKEDMQQFK 183
              S+    L  +  +   AV   Y+A NP       V R K +   I P T +++    
Sbjct: 123 LAGSTVRHMLNVISGVMTRAVEAGYIAHNPGQRMGRGVIRIKDRKADIEPLTTQELDHLL 182

Query: 184 SFWSEGSQPRLAFEFLLY-SGLRCSDSCRAGVQHLQ--NNIFSIKTQ---------KTGT 231
               +           L  +G+R  ++       +        I+           K+G 
Sbjct: 183 EVVRDRFPNAFPMILTLARTGMRLGEARGLEWGDIDFRGGFIMIRRGVSRERMETPKSGK 242

Query: 232 IITVELPDGFMKLLAMTPIGK-------------ETFFINNDKQKMNATQFSIWFKAKAT 278
              V++      +L      +             +  F++ + + ++   F      KA 
Sbjct: 243 GRRVDMSRQLAAVLLDLRARRKREALAKGWGKVPDRVFLSAEGKPVHDYHFRNRIWYKAL 302

Query: 279 K-AGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADRIRLGIKN 335
           + AG+ +   H +R   A++    G +   +    G  ++    +TY        L    
Sbjct: 303 EYAGLRRVRIHDLRHTFASLLIQNGESLAYVRDQLGHCSISLTVDTYGH------LAPDG 356

Query: 336 SRRISSVVDS 345
           +R     +D+
Sbjct: 357 NRNAVDKLDN 366


>gi|225574819|ref|ZP_03783429.1| hypothetical protein RUMHYD_02896 [Blautia hydrogenotrophica DSM
           10507]
 gi|225038019|gb|EEG48265.1| hypothetical protein RUMHYD_02896 [Blautia hydrogenotrophica DSM
           10507]
          Length = 279

 Score = 95.9 bits (237), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 33/280 (11%), Positives = 94/280 (33%), Gaps = 26/280 (9%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
           +  Y         ++ +   ++      +       + K +    +  +  +++ P+S  
Sbjct: 10  LDSYLDYLKRQERSLATIKQYQRDIQSFLMYIKKHGFCKESVIQYKEKL-RKEYLPASVN 68

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS---- 190
             L ++     ++   E         V++ + + +      ++++ + +      +    
Sbjct: 69  VKLAAINGFLNYSGATEL-------KVKQLRIQKKTYCA-KEKELSKNEYLCMVNTARSL 120

Query: 191 -QPRLAFEF--LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE--LPDGFMKLL 245
            Q +LA     +  +G+R S+      + + N    I  +     + +   L     + +
Sbjct: 121 GQEKLALLLQTICGTGIRVSELSFITAEAVCNGEALIHMKGKTRTVLIPGKLRKVLKRYM 180

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGA 302
               I     F+    + ++ +      K    KAGV       H +R   A     A  
Sbjct: 181 GSQKISSGAVFVTRTGRPLDRSNIWKMMKRLCGKAGVETKKVFPHNLRHLFARCFYAADK 240

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
              +L    G  +++    Y K +     G+++ +R+ ++
Sbjct: 241 DIAKLADVLGHSSINTTRIYIKSS-----GVEHRQRMDAL 275


>gi|170744751|ref|YP_001773406.1| integrase family protein [Methylobacterium sp. 4-46]
 gi|168199025|gb|ACA20972.1| integrase family protein [Methylobacterium sp. 4-46]
          Length = 413

 Score = 95.9 bits (237), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 42/277 (15%), Positives = 101/277 (36%), Gaps = 30/277 (10%)

Query: 100 DQIIRKSGDFDYRKITTKHIRSGVESRKHTP--SSAIQFLTSMRVLFKWAVRQEYVAINP 157
           + ++   G      I    + + V+        + A +   + R LF +A+ ++ +   P
Sbjct: 131 NHVLPHWGHRRIGDIGRADVIALVDGLTDRGMTTGANRVFATTRALFNFALGRDLITSTP 190

Query: 158 CLSVERPKRKTEGIRPWTKEDMQ-QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216
            L ++ P       R  +  +++  +      G       + LL +G R +++       
Sbjct: 191 FLGLKPPLPNPSRDRVLSDAEVRWAWLCAERIGFPFGPMVQLLLLTGTRRNETGEMVWSE 250

Query: 217 LQNNIFSIKTQKTGTII--TVELPDGFMKLLAMTPI--GKETFFINNDK----------- 261
           L   +++I   +T   +   V LP   +++LA  P   G+  +    +            
Sbjct: 251 LDGTVWTIPGARTKNSLEHVVPLPPAAIEILAAVPRIAGRPGYVFTRNGSTPASDLSAGK 310

Query: 262 QKMNATQFSIWFKAKATKAGVNK-------SAHGVRKFSATISADAGATAHELMATYGWK 314
           +++ A   ++     A +    K       + H +R+ +A+  A  G   H + A    +
Sbjct: 311 RRLEAAMLTVAQSEAARRGEDPKAVTIPRWTLHDLRRTAASGMARLGTDPHVVEAVLNHR 370

Query: 315 TVDQ---AETYTKGA--DRIRLGIKNSRRISSVVDSD 346
           +      A  Y + A  +  R  ++   +  + + +D
Sbjct: 371 SGTISGVAAVYNRYAYLNEKRAALETWGKHVTSLAND 407


>gi|297617958|ref|YP_003703117.1| integrase family protein [Syntrophothermus lipocalidus DSM 12680]
 gi|297145795|gb|ADI02552.1| integrase family protein [Syntrophothermus lipocalidus DSM 12680]
          Length = 280

 Score = 95.9 bits (237), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 41/261 (15%), Positives = 88/261 (33%), Gaps = 24/261 (9%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS---------GVESRKHTPSSAIQF 136
            L   +  ++        R   + +   +    + S          + +R   P++  + 
Sbjct: 9   ELNRGTARAYREDLLDFSRWFAETNGESLEPHLVTSIDLKEYQSHMILNRGLKPATVNRR 68

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF-KSFWSEGSQPRLA 195
           + ++R   +W   Q  +   P    +R  +     +  +K + ++F ++   EG++  +A
Sbjct: 69  MAAIRAWMRWCQEQGLIENLP-RWPKRAAQVQHAPKALSKREQERFLRAVEKEGNRRDVA 127

Query: 196 FE-FLLYSGLRCSDSCRAGVQHL---QNNIFSIKTQKTGTIITVELPDGFMKLLA----- 246
               +L++GLR  ++ R  V  +           T K      V L      ++      
Sbjct: 128 LIGLMLFAGLRVGEAARVRVSDVSISDRKGKVSITGKGMKHREVPLGFDARNMVRDWLNH 187

Query: 247 -MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAGA 302
                 +E  F   +   ++A       K  A +A +     + H +R   AT     G 
Sbjct: 188 QAQHAQQEWLFPGQNGGHISARAVQHMIKKYAWQARIEPQKITPHVLRHTFATNLLRDGV 247

Query: 303 TAHELMATYGWKTVDQAETYT 323
               + A  G   +D    YT
Sbjct: 248 DLVTVAALLGHSRLDTTARYT 268


>gi|256026508|ref|ZP_05440342.1| putative integrase [Fusobacterium sp. D11]
 gi|289764520|ref|ZP_06523898.1| conserved hypothetical protein [Fusobacterium sp. D11]
 gi|289716075|gb|EFD80087.1| conserved hypothetical protein [Fusobacterium sp. D11]
          Length = 329

 Score = 95.9 bits (237), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 35/262 (13%), Positives = 87/262 (33%), Gaps = 14/262 (5%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS- 132
            +  +  + H    +  S   +++  + + +K  D   + ITT  +R  +++ +   ++ 
Sbjct: 54  YLEAFLSAKHVEGCSRKSLKYYKATIENLFKKI-DKSIKHITTNDLREYLDNYQKEGNAS 112

Query: 133 ---AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
                         F W   ++Y+  +P   + + K  T     ++ E M+  +      
Sbjct: 113 KITIDNIRRIFSSFFAWLEEEDYILKSPVRRIHKVKTGTLVKETYSDEAMEIMRDNCRS- 171

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDG----FMKL 244
            +     + L  +G+R  +  +  ++ +       +   K      V             
Sbjct: 172 LRDLAIIDILASTGMRVGELVKLNIEDIDFEGRECVVFGKGDKERKVYFDARTKIHLHNY 231

Query: 245 LAMTPIGKETFFIN--NDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG 301
           L          F++     +++  +   I  +    K  + K   H  R+  AT + D G
Sbjct: 232 LKTRDDDNSALFVSLLKPYKRLQISGVEIMLRQLGRKLNITKVHPHKFRRTLATKAIDKG 291

Query: 302 ATAHELMATYGWKTVDQAETYT 323
               ++    G + +D    Y 
Sbjct: 292 MPIEQVQQLLGHQKIDTTLQYA 313


>gi|251778173|ref|ZP_04821093.1| phage integrase [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|243082488|gb|EES48378.1| phage integrase [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 388

 Score = 95.9 bits (237), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 63/387 (16%), Positives = 121/387 (31%), Gaps = 63/387 (16%)

Query: 11  VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
           + K++ ++GK  Y++R  H    +    +  T                  I + ++   T
Sbjct: 5   IYKKKIKNGKDYYFYRLRHENLDKPADLYGRTVKELEDRIKQRKYELEHDIVNNKECFET 64

Query: 71  L--KWLISEYRKSAHWGSLAVNSRISFESYFDQIIR-----KSGDFDYRKITTKHIRSGV 123
               WL        H+  L  +++ ++E  +   ++     K    + + I  +   + +
Sbjct: 65  FFTDWLFD-----IHFSHLKPSTKENYEGVYRMYVKNSSLSKIKVKNLKLIDIQKFYNSL 119

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK-------RKTEGIRPWTK 176
            S   T          +R   ++      +  +   S+  PK        K   I P+T+
Sbjct: 120 VSNGCTIIRIKNIHKIIRPFIRYLYANNIIIKDFSSSIILPKEDEKTKLAKENKIIPFTR 179

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ------------------ 218
           E+ + F S    G    + F   LYSGLR  +        +                   
Sbjct: 180 EEEKTFLSAIK-GQHLEMLFVTALYSGLRQGELFALTWNDINFEKAYIDVNKTYRYIADV 238

Query: 219 ------NNIFSIKTQKTGTII-TVELPDGFMKLLAMTPIG--------------KETFFI 257
                     SI+T KT   I TV +P   +K+L                        F 
Sbjct: 239 TRTGRTGGYSSIQTPKTPKSIRTVPIPQFLIKMLLQYRNDQRLLKIKYADVYEDHNLVFC 298

Query: 258 NNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTV 316
           N     +  +     +K   T   +  +  H +R   AT   + G     +    G  TV
Sbjct: 299 NKLGAYLVDSTVGRQYKIILTNNNIPLRKFHDMRHTFATRLFELGEEPKTVQELLGHSTV 358

Query: 317 DQA-ETYTKGADRIRLGIKNSRRISSV 342
                TYT   + ++   +   ++  +
Sbjct: 359 SITLNTYTHVLESVK--QQAISKLDEL 383


>gi|292669749|ref|ZP_06603175.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
 gi|292648546|gb|EFF66518.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
          Length = 344

 Score = 95.9 bits (237), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 44/248 (17%), Positives = 78/248 (31%), Gaps = 31/248 (12%)

Query: 101 QIIRKSGDFDYRKITTKHIRSGVESRKHTPSS---AIQFLTSMRVLFKWAVRQEYVAINP 157
           Q++   G+     IT   ++  V +    P S          +  +   A   + + +NP
Sbjct: 69  QLLPAFGEQPLAAITRSQVQGFVNAMADHPYSMETIKATKCLLSSIMALAASDQLIPVNP 128

Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217
           C +V+ PK +    R  + E+ ++     SEG +  +A   L  +GLR  +      + +
Sbjct: 129 CKAVKLPKVEPNKKRAPSMEEFKRLMK-ASEGHRLWIAIPLLFLAGLRLGEMLALTWEDI 187

Query: 218 QNNIFSIKTQKTGT-------------------IITVELPDGFMKLLAMTPI----GKET 254
                 I   KT +                     ++ + D    +L         GK  
Sbjct: 188 DMKERLIHVSKTWSVENGSGKAYLKDSPKTKAGRRSIPIGDDLYTMLKRYRTNEGKGKNV 247

Query: 255 FFINNDKQKMNATQ--FSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMAT 310
                D  +    Q      FK     A + K  + H  R + A     AG     L   
Sbjct: 248 VIPKRDADEYTHPQVFRGKVFKYWCYDADLPKDITPHSGRHYFAYHLYAAGVNPETLRHI 307

Query: 311 YGWKTVDQ 318
            G   +  
Sbjct: 308 TGHSDITT 315


>gi|158340210|ref|YP_001521380.1| phage integrase [Acaryochloris marina MBIC11017]
 gi|158310451|gb|ABW32066.1| phage integrase [Acaryochloris marina MBIC11017]
          Length = 551

 Score = 95.9 bits (237), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 57/315 (18%), Positives = 103/315 (32%), Gaps = 43/315 (13%)

Query: 50  ALTGSTPKREYINSPRK--KPTTLKW-LISEYRKSAHWGSLAVNSRISFESYFDQIIRKS 106
           A    +PK      P +   P  ++W ++ E+ +++   +L+ NS+  +E    + +   
Sbjct: 22  ADQAPSPKSIRRGRPTQIPTPMDIRWPMVQEFLRNS---NLSPNSQKLYERELKRFLG-W 77

Query: 107 GDFDYRKITTKHI---------RSGVESRKHTPSSAIQFLTSMRVLFKWAVR--QEYVAI 155
             F +  +T +H+             E +  + +S    LT+++  FKW  +   E    
Sbjct: 78  THFRWSDLTLRHLGQYKVYLMELKVAEGKTLSKNSLNSALTALKSFFKWLTQFHPELCPT 137

Query: 156 NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR------LAFEFLLYSGLRCSDS 209
           NP   V+  K      +  T E+M +    W   +Q        LA   LL   LR  + 
Sbjct: 138 NPTKGVKFEKVPLPPAQNLTPEEMTR---VWDAITQREQTQLRDLALVQLLSHNLRAGEV 194

Query: 210 CRAGVQHLQNNIFSIKTQKTGTIITVEL-----------PDGFMKLLAMTPIGKETFFIN 258
             A V      + SI   K      V L            D            +    ++
Sbjct: 195 VTANVGSFDGRLISITKTKNNQPRLVPLSTEGQQVVQEYLDWRKDQQGEALSAESPLILS 254

Query: 259 ND----KQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGW 313
           +      Q+++        +     A + +   H  R  SAT     G          G 
Sbjct: 255 HHQGWEGQRLSYHGVYFAVEDIGRLAELPDLHPHQFRHTSATEYLRMGLDPAHARRLTGH 314

Query: 314 KTVDQAETYTKGADR 328
                   YT  A++
Sbjct: 315 TDERSFRRYTVAAEQ 329


>gi|320161568|ref|YP_004174792.1| putative site-specific recombinase [Anaerolinea thermophila UNI-1]
 gi|319995421|dbj|BAJ64192.1| putative site-specific recombinase [Anaerolinea thermophila UNI-1]
          Length = 292

 Score = 95.9 bits (237), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 42/280 (15%), Positives = 90/280 (32%), Gaps = 38/280 (13%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT--------KHIRSGVES- 125
           +  +         +  +   + +   Q  R     + R +          +  R+ +++ 
Sbjct: 4   LQAFEAWLREQDRSDVTVRGYLADMSQFERWFEQTNGRGLRVEDVTPADVREYRAWLQTV 63

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +K + ++  + L ++R   +W +    +  NP   ++ P+ +        + +  +    
Sbjct: 64  QKASAATIRRRLMALRAYCRWGMAAGKIERNPTARLKMPREEKLSPGWLERSEQWRLVRE 123

Query: 186 WSEG-----SQPRLAFE--------FLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQK 228
              G     +  R            FLL++GLR S++C   V  +Q         +++ K
Sbjct: 124 AERGIQAADTPARRRLAVRDWALVVFLLHTGLRVSEACAVEVSDVQMGERSGWVQVRSGK 183

Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK-----MNATQFSIWFKAKATKAGVN 283
                 V L     + L         +      Q      M  +           +AGV 
Sbjct: 184 GAKARKVPLNAEARRALKA-------WLEERGGQPGRMFEMTVSGVQRRLAEMGRRAGVE 236

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
              H +R   A    DAG    E+ A  G  +++    Y 
Sbjct: 237 VHPHTLRHTLAKNLVDAGVGLQEVAALLGHSSLNATRVYV 276


>gi|291531296|emb|CBK96881.1| Site-specific recombinase XerD [Eubacterium siraeum 70/3]
          Length = 391

 Score = 95.9 bits (237), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 51/294 (17%), Positives = 94/294 (31%), Gaps = 40/294 (13%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKH 128
           TL   +  +       ++  ++  S+++   +QI    GD     +TT+ ++    + K 
Sbjct: 70  TLGEWLDRWINEYMIFTIRESTLDSYKAMIKNQIKPYLGDRPLSALTTQELQKFYNTVKK 129

Query: 129 TPSS----------AIQFLTSMRVLFKWA----VRQEYVAINPCLSVERPKRKTEGIRPW 174
                         A   +  + ++   A    VR   +  NP +    PK      +  
Sbjct: 130 KGRVKPDKLHGTELADSMVRGIHMMLHEALDMAVRLRLIVKNPTVGTTIPKNNYPPKQIL 189

Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK------ 228
             E +++F     +  +    F   L +GLR  + C    +        +K ++      
Sbjct: 190 NDEQLERFMKRIRQDKRWYDFFYTELTTGLRRGEICGLKWEDFDAENGKLKVRRSVAKRK 249

Query: 229 ------------TGTIITVELPDGFMKLLAMTPIGKET--FFIN--NDKQKMNATQFSIW 272
                       TGT  T+ LP    +LL        +   F N    +  M+       
Sbjct: 250 GGGLNIGETKTETGTR-TIVLPPSTAELLRKRKETAVSEWIFPNIYEPENPMHPDYAYHR 308

Query: 273 FKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTK 324
            K    +A +     H +R   AT +   G  A  L    G        +TYT 
Sbjct: 309 LKTLLKQAELPLIRFHDLRHTFATHALAGGVDAKTLSGILGHTNASFTLDTYTH 362


>gi|295107192|emb|CBL04735.1| Site-specific recombinase XerC [Gordonibacter pamelaeae 7-10-1-b]
          Length = 427

 Score = 95.9 bits (237), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 51/375 (13%), Positives = 107/375 (28%), Gaps = 80/375 (21%)

Query: 25  FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHW 84
           +RK   R +       +  +  Y + +  ++  R           T+      + +    
Sbjct: 46  YRKSPSRTVHGTKSEATKALMEYRAEIMDASAVRP-------SDITIGEYAVRFHEEREH 98

Query: 85  GSLAVNS--RISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS--- 139
              +  +  R ++E    +I    G +  +++ T  +RS     +   ++  +       
Sbjct: 99  EFRSPLAWNREAYE--IKRIAEAFGAYRLQELDTLTLRSAYSRMRKEGATESRLHRVHQK 156

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW--SEGSQPRLAFE 197
           +  +   AV    VA NPC  +  P+ K +     T ++ Q+  S       S P  A  
Sbjct: 157 LSQIMNQAVDDGLVAKNPCSPISIPRPKPKERHSLTVDEAQRLNSIILGLPASAPHCAVL 216

Query: 198 FLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQ-----------KTGTIITVELPDGFMKL 244
             L++G+R  +      +H+        +  Q              +   + L    +  
Sbjct: 217 LALHTGMRRGEVLGLTWEHVHFDKRRLYVAQQYACDKVPRDPKSKKSKRWISLDSEIVAY 276

Query: 245 L--------------------------AMTPIGKETFFINNDKQKMNATQFSIWFKAKAT 278
           L                          A+    K     N      +   F  WF+    
Sbjct: 277 LEEWKRTQRIELENRKRRLDREDTDAIAILQTEKSPVVTNVYGGYYDPNIFGRWFREFCV 336

Query: 279 KAG------------------VNKS------AHGVRKFSATISADAGATAHELMATYGWK 314
           + G                  + ++       H +R   AT+    GA    +    G  
Sbjct: 337 ENGFGEQGRAIRYVDSRGIPRIKRTGYEGLKFHELRHTQATLLISNGADIKTVQNRLGHS 396

Query: 315 TVD-QAETYTKGADR 328
           T     + Y    ++
Sbjct: 397 TAALTMDIYAHAIEQ 411


>gi|153006817|ref|YP_001381142.1| phage integrase family protein [Anaeromyxobacter sp. Fw109-5]
 gi|152030390|gb|ABS28158.1| phage integrase family protein [Anaeromyxobacter sp. Fw109-5]
          Length = 365

 Score = 95.9 bits (237), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 41/262 (15%), Positives = 84/262 (32%), Gaps = 27/262 (10%)

Query: 84  WGSLAVNSRISFESY------FDQIIRKSGDFDYRKITTKHIRSGVESR---------KH 128
           W +    +R   +S+         ++   G     K+T K +    E R           
Sbjct: 72  WKAWEPITRRDNDSWRSDVDRARHLVEHLGSRRAAKLTRKDVEEYREKRFEETTRRGGPP 131

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
            P +  + +  ++    +A+    +  NP  +V                 +++       
Sbjct: 132 APGTIDREIALLKRCINFAIECGTLVRNPIAAVPLLNEPNTRDMVLKPVMLERILKAAPP 191

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ----KTGTIITVELPDGFMKL 244
              P    EF   +GLR ++      + +   +  I+      KT     V L    +++
Sbjct: 192 TFAP--VIEFDYETGLRKTELRFLRWEQVDLGLGCIRLSAKETKTNEARVVYLTSRALEI 249

Query: 245 LAMTPIG--KETFFIN-NDKQKMNATQFSIWFKAKATKAGVNKSA-HGVRKFSATISADA 300
           L  TP        F+N +  +  +    +   +    +AG      H +R+   T +  +
Sbjct: 250 LRATPRQLHSPYVFVNPDTGRPWSE--HNKMLRRACERAGYAGIWFHDLRRSFVTNARRS 307

Query: 301 GATAHELMATYGWKTVDQAETY 322
           G     +M   G KT    + Y
Sbjct: 308 GVPESVVMKLSGHKTRSVFDRY 329


>gi|319744124|gb|EFV96497.1| phage integrase family site-specific recombinase [Streptococcus
           agalactiae ATCC 13813]
          Length = 384

 Score = 95.9 bits (237), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 56/349 (16%), Positives = 108/349 (30%), Gaps = 54/349 (15%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEY 78
           GK  YY ++G   R             A+ +A+        +++   +   T + L   +
Sbjct: 26  GKKKYYTKRGFKTRKAAK---------AHETAVNHQLNSGTFVHITAQTTYTYQELYQRW 76

Query: 79  RKSAHWGSLAVNSRISFESYFDQ--IIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF 136
            +   +      +     +   +  I+   G+    KI+    ++ +  +  T  +  Q 
Sbjct: 77  YE--AYKDTVEATTAVKTADLYRLHILPVFGEKKISKISPLDCQTFITDKAKTFKNMKQI 134

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-PWTKEDMQQFKSFWSEGS--QPR 193
            +    +F++A+   Y+  NP   V  PK K       WT +++  F +   E    +  
Sbjct: 135 KSYTSKIFEFAINMNYIERNPMSKVIMPKLKKTVSENYWTVDELHHFLTIILENEPYKHY 194

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT----------------VEL 237
             F  L YSGLR  +      +   +    +   K+   I                 + L
Sbjct: 195 ALFRLLAYSGLRKGELYALKWEDFDSENQLLTVSKSLGRIDGHAIEKGTKNIFSVRSIYL 254

Query: 238 PDGFMKLLAMTPIGKET---------------FFINNDKQ-----KMNATQFSIWFKAKA 277
            D    +L                        F      +      ++A   +   K   
Sbjct: 255 DDETCSILNKWKQETSREKWQLSVQPLSLDKEFMFTYYNRDGEVEPLHADYINNILKRII 314

Query: 278 TKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
            K  + K S HG R   AT+  + G          G  +     +TY+ 
Sbjct: 315 RKHNLKKISPHGFRHTHATLMIEMGIDPVNTAKRLGHASSQMTLDTYSH 363


>gi|218442469|ref|YP_002380790.1| integrase [Cyanothece sp. PCC 7424]
 gi|218175240|gb|ACK73971.1| integrase family protein [Cyanothece sp. PCC 7424]
          Length = 304

 Score = 95.9 bits (237), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 48/308 (15%), Positives = 104/308 (33%), Gaps = 37/308 (12%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH- 128
           TL  L++++ +      L+ N+  S+ES    ++++ G      +T + +   +    H 
Sbjct: 4   TLASLVTQFLERPQ---LSQNTIRSYESTLMPLLQQLGSVKVDLLTRQQLIEYLSGLTHL 60

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT--------EGIRPWTKEDMQ 180
           + ++  +    ++ L  +AV Q ++  NP   ++  K           E IR    E + 
Sbjct: 61  SYTTYNRHQAILQSLLNFAVEQGFLTSNPLSGLKSRKPDREKGEHSSDEPIRYLNPEQIA 120

Query: 181 QFKSFWSEGS------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTII 233
                  E S      + +     L  +G R ++     ++ +       +   K     
Sbjct: 121 VLYRLLKENSYKPQIYRLQTLVTLLHRTGARIAEILALDLEEIDLKNRRFQVIGKGNKQR 180

Query: 234 TVELPDGFMKLLAMTP-----IGKETFFINND--KQKMNATQFSIWFKAKATKAGVNKSA 286
                D   K+L +             F       ++++   +   ++  +    + KS 
Sbjct: 181 WCFYSDDVAKILEIYLKHYRYTEHSALFTAQQPLSKEVSRLSYRTAYRDWSNL--IAKSP 238

Query: 287 -------HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
                  H +R   AT          EL A  G + +     Y K     R      + +
Sbjct: 239 VLKGFRLHDLRHTFATE-RVGLMGIEELRALMGHENIQTTLRYQK-VTSSRAEEVAQKAL 296

Query: 340 SSVVDSDD 347
           S +V+S+ 
Sbjct: 297 SILVNSEK 304


>gi|282600876|ref|ZP_05979981.2| putative tyrosine recombinase XerD [Subdoligranulum variabile DSM
           15176]
 gi|282571222|gb|EFB76757.1| putative tyrosine recombinase XerD [Subdoligranulum variabile DSM
           15176]
          Length = 322

 Score = 95.9 bits (237), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 43/290 (14%), Positives = 97/290 (33%), Gaps = 20/290 (6%)

Query: 50  ALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD- 108
           A+         + +P ++  TL  +   +    H+  +  +++ S+++ + +     G  
Sbjct: 19  AVRELDAVNARLIAPDRQMYTLADVYDRWSV-LHFPKITKSAQQSYKNAYRKAEPLQGRR 77

Query: 109 -FDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167
             D +    + I + + + K + S   +       L ++A+RQ+ +  N    +  P   
Sbjct: 78  MMDLKTEDYQEIITDMAAHKASRSLCEKQRQLFSQLCQYAMRQDIINTNYAQGLVLPSAS 137

Query: 168 TEGIRPWTKEDMQQFKSFWS---EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
               R  ++ +++   S       G   R+A   L+Y+G+R ++   A   ++      +
Sbjct: 138 APQTRVLSEAEVEAIWSMADDKRLGETARIAL-VLIYTGMRLNELLTARRTNVHLEAGYL 196

Query: 225 KTQKT---GTIITVELPDGFMKLLAMTPIGKET--FFINNDKQKM----NATQFSIWFKA 275
              +    G    + L       +     G +T     +              F    K 
Sbjct: 197 VGGEKTEAGRDRVIPLHTDVQPFIREWLNGNDTDFLIPSKYGIPRDHNNVRKSFGSLMKK 256

Query: 276 KATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
              + GV    H  R  +AT    +G     +    G   +      YT 
Sbjct: 257 LEIQ-GVK--PHTCRHTAATKMMASGLAPEVVKQILGHADITTTLNIYTH 303


>gi|149184521|ref|ZP_01862839.1| phage integrase [Erythrobacter sp. SD-21]
 gi|148831841|gb|EDL50274.1| phage integrase [Erythrobacter sp. SD-21]
          Length = 299

 Score = 95.9 bits (237), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 41/261 (15%), Positives = 84/261 (32%), Gaps = 22/261 (8%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP------SSAIQFLTS 139
             + ++  ++    ++++ +    ++ +I                      +SA + L++
Sbjct: 19  RRSPHTVRAYHKAAERLLSRLHLHEFDQIAELSAGKLRTHLASRRSDGLSNASAARELSA 78

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED-------MQQFKSFWSEGSQP 192
           ++    +A  Q          +  P+ K    RP T +D       +++       G++ 
Sbjct: 79  LKSFIGFARAQAGHEQTDAPRMRGPRLKKGLPRPVTPDDAIGLAETIEELAVDGWVGARD 138

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM----- 247
           R     L  +G+R S++       L        T K      V L       +A      
Sbjct: 139 RAVLLLLYGAGMRISEALSLKGGDLPLGETLTVTGKGNKQRVVPLLPLVRDSVATYVKQC 198

Query: 248 -TPIG-KETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGAT 303
             P+G K+  F       ++               G+    + H +R   AT    AGA 
Sbjct: 199 PWPLGPKDPLFRGVKGGVLSQGVVQKATARARRALGLPDTATPHALRHSFATHLLGAGAD 258

Query: 304 AHELMATYGWKTVDQAETYTK 324
              L    G  ++   + YTK
Sbjct: 259 LRSLQELLGHASLGSTQIYTK 279


>gi|34451618|gb|AAQ72365.1| putative integrase [Thermus sp. R]
          Length = 391

 Score = 95.9 bits (237), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 49/254 (19%), Positives = 90/254 (35%), Gaps = 33/254 (12%)

Query: 86  SLAVNSRISF----ESYFDQIIRKSGDFD-YRKITTKHIRSGVESRKHTPSSAIQFLTSM 140
             +  +   +      +      + G    + ++ ++HIR+ + SR+ +P  A + L S+
Sbjct: 97  GRSPRTAKEYLMDAGLFARWFRERHGRPPRWEEVGSQHIRAFLASREVSPYRAGRVLASL 156

Query: 141 RVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA--- 195
           R LF++    E +    +P   V+RPK         T  ++ +      +   PR+A   
Sbjct: 157 RKLFRYLAEVEGLPLLKDPTEGVKRPKLPRRLPVYLTPPEVARLLQAAYQNRSPRVALRD 216

Query: 196 ---FEFLLYSGLRCSDSCRAGVQHL--QNNIFS--IKTQKTGTIITVELPDGFMKLLAM- 247
                FL  +GLR S++       L  Q+ I        K G    V L     + L   
Sbjct: 217 WALLAFLYGTGLRLSEALALTYADLTYQDGIPHAIRVQGKGGKERVVVLSPTAQRALHQW 276

Query: 248 -------TPIGKETFFIN----NDKQKMNATQFSIWFKAKATKAGVN----KSAHGVRKF 292
                          + +    N  +  +A       K  A +AG+      + H +R  
Sbjct: 277 LKHRNLEGHPTSPYIWSHTSGPNRGKPFSARAVEAMVKRVAKRAGLKDWRRITPHKLRHS 336

Query: 293 SATISADAGATAHE 306
            A+   +AG    E
Sbjct: 337 YASALVEAGRGIDE 350


>gi|148989772|ref|ZP_01821081.1| hypothetical protein CGSSp6BS73_01057 [Streptococcus pneumoniae
           SP6-BS73]
 gi|147924888|gb|EDK75971.1| hypothetical protein CGSSp6BS73_01057 [Streptococcus pneumoniae
           SP6-BS73]
          Length = 277

 Score = 95.9 bits (237), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 38/260 (14%), Positives = 87/260 (33%), Gaps = 37/260 (14%)

Query: 102 IIRKSGDFDYRKI--TTKHIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAIN 156
           ++   G   Y  I    +H+R  V      P   ++  + +  ++ +F   +R+ Y + N
Sbjct: 1   MVDNVGKLTYEDIYQFREHLRQKVAKNSDKPLSTNTINKIMILLKKIFDVGLRKGYYSSN 60

Query: 157 PCLSVERPKRKTEGIRPWTKEDMQQFKSFW-SEGSQPRLAFEFLLYSGLRCSDSCRAGVQ 215
           P   +++   +   ++ WT ++ Q+F + +  E    +L F  L ++GLR  ++     Q
Sbjct: 61  PAKLIKKLPIEKTKMQFWTVKEFQKFLTLFEPEEYNIKLLFTVLFFTGLRLGEALALTWQ 120

Query: 216 HLQ---------------NNIFSIKTQKTGTII-TVELPDGFMKLLAMTPIGKETFFINN 259
            +                  +  I T KT      + +     + L      ++      
Sbjct: 121 DIDFSSNTIHITKSVYVNKGVTHISTTKTKAGTRRIVINKKLSQELQDWEKRQKHLLEQF 180

Query: 260 DKQKMNATQFSI------------WFKAKATKAGV--NKSAHGVRKFSATISADAGATAH 305
               +    F               +K    +  +      H  R   A++  + G    
Sbjct: 181 TNNSLTLQVFQNSPITITKNAIEKQYKKIIERDSILKKIRIHDFRHSHASLLINQGEDYL 240

Query: 306 ELMATYGWKTVDQA-ETYTK 324
            +    G  ++    +TY+ 
Sbjct: 241 VVKERLGHASITTTIDTYSH 260


>gi|260855381|ref|YP_003229272.1| putative integrase [Escherichia coli O26:H11 str. 11368]
 gi|257754030|dbj|BAI25532.1| putative integrase [Escherichia coli O26:H11 str. 11368]
          Length = 426

 Score = 95.9 bits (237), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 46/317 (14%), Positives = 99/317 (31%), Gaps = 64/317 (20%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK-ITTKHIRSGVESR-- 126
           T+K L  ++        +A  S  ++ +    I+   G+ +    I  + + +  +    
Sbjct: 80  TIKELAEKFLALKE-TEVAKTSLNTYRAVIKNILSIIGEKNLASSINKEKLLAVRKELLT 138

Query: 127 --------------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
                           +  +   ++T++  +F++ V   Y+A NP   +   K       
Sbjct: 139 GYQIPKSNYIVTQPGRSAVTVNNYMTNLYAVFQFGVDNGYLADNPFKGISPLKESRTIPD 198

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK----- 225
           P ++E+  +         Q +  +   +Y+G+R  + C  G + +   N    I+     
Sbjct: 199 PLSREEFIRLIDAC-RNQQAKNLWCVSVYTGIRPGELCALGWEDIDLKNGTMIIRRNLAK 257

Query: 226 --------TQKTGTIITV--ELPDGFMKLLAMTPIGKETFF------------------- 256
                      T  +I +     D     +A+T + KE                      
Sbjct: 258 DRFTVPKTQAGTNRVIHLIKPAIDALRSQMALTRLSKEHIIDVHLREFGRTEKQKCTFVF 317

Query: 257 -------INNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELM 308
                  + N             + A   +AG+ ++ ++  R   A  S  AGA    + 
Sbjct: 318 QPEVSAKVKNYGDHFTVDSIRQMWDAAVKRAGIRHRKSYQSRHTYACWSLTAGANPAFIA 377

Query: 309 ATYGWKTVDQA-ETYTK 324
              G        + Y K
Sbjct: 378 NQMGHADAQMVFQVYGK 394


>gi|188492966|ref|ZP_03000236.1| integrase [Escherichia coli 53638]
 gi|188488165|gb|EDU63268.1| integrase [Escherichia coli 53638]
          Length = 358

 Score = 95.9 bits (237), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 42/276 (15%), Positives = 89/276 (32%), Gaps = 26/276 (9%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--K 127
           T+   I  Y+       ++ N+     +  + I  K G+    +ITT+HI   ++     
Sbjct: 75  TMADWIERYKTILIRRKVSRNTYKIRANQLETIKEKLGEILLTEITTRHIAEFLDLWIEG 134

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK--RKTEGIRPWTKEDMQQFKSF 185
              + A    + +  +F+ A+ +  ++ NP      PK     E ++  T   +++    
Sbjct: 135 GKNTMAGSMRSVLSDMFREAIVEGRISQNPVTPTRAPKIVVTRERLKLKTYNCIREAADQ 194

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL- 244
                   LA +  L +G R  D        + ++   ++  KTG +I + L        
Sbjct: 195 LPAWFP--LAMDLALVTGQRREDITNMRFSDIYDDRLHVRQIKTGMMIAIPLSLSLPVAG 252

Query: 245 -------LAMTPIGKETFFINNDKQKMN------ATQFSIWFKAKATKAGV-----NKSA 286
                       + +  + I+   +K +          +  F A     G+       + 
Sbjct: 253 LRLGTVVERCRLVSRGDYLISAGIRKNSPDGSIHPDGLTKKFVAARKFTGIQFSENPPTF 312

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           H +R   A                 G  +    + Y
Sbjct: 313 HEIR-SLAGRLYKETCGEEFAQRLLGHTSEKTTKMY 347


>gi|268610904|ref|ZP_06144631.1| integrase family protein [Ruminococcus flavefaciens FD-1]
          Length = 391

 Score = 95.9 bits (237), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 49/308 (15%), Positives = 101/308 (32%), Gaps = 61/308 (19%)

Query: 73  WLI---SEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKH 128
           WL     +Y K      + + + +++++Y    I    G +    + T  ++S    +  
Sbjct: 72  WLCTWLDQYCK----IEVKLTTYVNYDTYVHRHIKNTIGGYKLCDLNTSIMQSFFNEKAE 127

Query: 129 ----------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
                     +P +       M      AV  + +  NP   V  PKR+   +R  T ++
Sbjct: 128 NGKLHSSGGLSPKTIKNMHDMMHRALDKAVHLDMIIKNPTDFVTLPKRRKSEMRFLTIDE 187

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-----QNNIFSIKT------- 226
            ++ +     G +  +     LY+G+R  +      +++           +         
Sbjct: 188 QKKLQEALK-GDRLEMPVLLALYTGMRQGEIFGLKWKYVHIESTDRAWLRVVQAVNRFSN 246

Query: 227 ------QKT----------GTIITVELPDGFMKLLAMTPIG------------KETFFIN 258
                 +KT           +I T+ L     + L                   E  F  
Sbjct: 247 RTDDGKRKTFLSLSEPKTPHSIRTIPLMPYIAERLTEYKCEQEQHFKDNGLPMSEMVFTT 306

Query: 259 NDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD 317
            +   ++   F   FK    + G+++ + HG+R   AT + ++G     L    G  +V 
Sbjct: 307 KNGNLVDPRNFQRDFKLLLKRNGLHEINVHGLRHTFATRALESGMNVKTLSKILGHSSVA 366

Query: 318 -QAETYTK 324
              +TY  
Sbjct: 367 FTLDTYAH 374


>gi|311744114|ref|ZP_07717920.1| integrase/recombinase XerD [Aeromicrobium marinum DSM 15272]
 gi|311313244|gb|EFQ83155.1| integrase/recombinase XerD [Aeromicrobium marinum DSM 15272]
          Length = 306

 Score = 95.9 bits (237), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 40/291 (13%), Positives = 93/291 (31%), Gaps = 28/291 (9%)

Query: 71  LKWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRK---SGDFDYRKITTKHIRSGVESR 126
              ++++Y         L+ ++  S+      +       G  D   +T + +RS + + 
Sbjct: 8   WAQILADYEHHLTRERDLSPHTVRSYLVDVRGLAEHATRLGIHDPAAMTIRTLRSHLATL 67

Query: 127 K---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
           K      ++  +  T++RV   W  R     ++    +  P  +       +  DM++  
Sbjct: 68  KSLGRARATLSRRATALRVFTAWLQRSGRADLDVGALLASPAARRTLPATLSAADMREVL 127

Query: 184 SFWSE--------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG----- 230
              +         G++     E L  +G+R  +     +  +  +   ++    G     
Sbjct: 128 DAATAMIDGDPVTGTRDLAILELLYATGVRVGELVGLDLDDVDRSRRVVRVLGKGRKERT 187

Query: 231 TIITVELPDGFMKLLA------MTPIGKETFFINNDKQKMNATQFSIWFKAK--ATKAGV 282
               +   D     LA       TPI      +     +++          +  A     
Sbjct: 188 VPFGLPAQDALDAWLAVGRPAVATPISGHAVLLGVRGGRIDPRTVRQVVHDRLGAVDGVA 247

Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           +   HG+R  +AT   + GA    +    G  ++   + YT  ++      
Sbjct: 248 DLGPHGLRHTAATHLLEGGADLRSVQEVLGHASLGTTQIYTHVSNERLRAA 298


>gi|291526261|emb|CBK91848.1| Site-specific recombinase XerD [Eubacterium rectale DSM 17629]
          Length = 376

 Score = 95.9 bits (237), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 51/347 (14%), Positives = 99/347 (28%), Gaps = 76/347 (21%)

Query: 47  YMSALTGSTPKREYINSPR-------KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF 99
           Y   L     K + I   +        + TT+  L   +        L  N+  +++  +
Sbjct: 7   YARTLDDLREKEKRIQKDKCDGIKTEARYTTIDELFDLWANMKR--GLKNNTFENYKYMY 64

Query: 100 DQIIRK-SGDFDYRKITTKHIRSG----VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA 154
           +  +R   G      +    I+      V+ R   PS+     T +  + + AV  +++ 
Sbjct: 65  NTFVRPVIGSKRISTLKKSDIKKYYNYLVDERNLKPSTIDNIHTVLHQVLQIAVDDDFIR 124

Query: 155 INPCLSVER-PKR----KTEGIRPWTKEDMQQFKSF---WSEGSQPRLAFEFLLYSGLRC 206
            NP  +V R  K+    ++E  R  TK + + F +F             F  ++ +GLR 
Sbjct: 125 NNPSDNVLRELKKAHCFQSEKRRALTKPEQELFLNFLKTHPAYEHWYPVFAVMIGTGLRV 184

Query: 207 SDSCRAGVQHLQNN------------------------IFSIKTQKTGTIIT-VELPDGF 241
            +        +                            F++ T KT   +  V +    
Sbjct: 185 GEVTGLRWCDIDMESGMIDVNHTLVYYDHRTEGSKSGCYFNVNTTKTPASMRQVPMLGFV 244

Query: 242 MKLLAMTPIGKET---------------FFINNDKQKMNATQFSIWFKAKATKAG----- 281
            +        +E                 FIN   Q  +    +   +            
Sbjct: 245 REAFEQEKQKQEDLGLHCEVTIDGYTDFIFINRFGQAQHQATLNKAIRRIIRDCNDEQFL 304

Query: 282 ---------VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
                     + S H +R    T   +AG     +    G   +   
Sbjct: 305 HSDEPDVLLPHFSCHSLRHTFTTRMCEAGVNIKVIQDALGHSDISTT 351


>gi|269928745|ref|YP_003321066.1| integrase family protein [Sphaerobacter thermophilus DSM 20745]
 gi|269788102|gb|ACZ40244.1| integrase family protein [Sphaerobacter thermophilus DSM 20745]
          Length = 376

 Score = 95.9 bits (237), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 50/330 (15%), Positives = 105/330 (31%), Gaps = 38/330 (11%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDF 109
           L  +  +++Y      +  T+K  +  + +     SL   +  S+       +    G  
Sbjct: 49  LARALVEQQYGLPVVSERETVKDYLERWLEDVARPSLRPRTYESYRGIITRHLTPALGRT 108

Query: 110 DYRKITTKHIRSGVESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
              +++   ++  +  ++    +P +       +R     A+R   V+ N       PK+
Sbjct: 109 RLARLSPDQVQRYINQKQAAGLSPRTVTYHRAVLRKALNDAMRWGLVSRNAAALAAPPKQ 168

Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226
                R  T E+ + F      G +    F   L  GLR  ++       +     ++  
Sbjct: 169 DRPPARFLTPEEARHFLDTV-AGHRLEALFTVALAVGLRQGEALGLRWDDVDLEAGTLTV 227

Query: 227 Q---------------KTG-TIITVELPDGFMKLLA-----------MTP--IGKETFFI 257
           +               KT  +  TV LP   ++ L              P    +   F 
Sbjct: 228 RYALQRSGGALVLVEPKTQRSRRTVALPAVALRALREHRTRQLEERIAAPYWDDQGFVFT 287

Query: 258 NNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTV 316
           +     ++A   +  F     +AG+     H +R   A++    G     +M   G   +
Sbjct: 288 STIGTAIDARNLTREFHRLRAEAGLPWLRFHDLRHGCASLLMAQGVNPRVVMEILGHSQI 347

Query: 317 D-QAETYTKGADRIRLGIKNSRRISSVVDS 345
                TY+  A    L    + +I  ++  
Sbjct: 348 TLTLGTYSHVA--PTLARDAADKIDGILGV 375


>gi|253681402|ref|ZP_04862199.1| putative integrase/recombinase [Clostridium botulinum D str. 1873]
 gi|253561114|gb|EES90566.1| putative integrase/recombinase [Clostridium botulinum D str. 1873]
          Length = 274

 Score = 95.9 bits (237), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 45/262 (17%), Positives = 88/262 (33%), Gaps = 25/262 (9%)

Query: 88  AVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSG----VESRKHTPSSAIQFLTSMR 141
           +  +  S+     Q     K+      KI    I       +  ++    +  + L S++
Sbjct: 18  SEKTIDSYIRDISQFNDYLKTNKKKLAKIKISDIDEFKNFLIYHKELKIKTINRKLVSIK 77

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGI--RPWTKEDMQQFKS--FWSEGSQPRLAFE 197
              K+         N  + +++ K + +       + +D++      +  +  + R    
Sbjct: 78  QYLKF--------NNISVDIKQEKVQMQNFLDDMLSNQDIENIIKATYAKDDLRARTIIY 129

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL---LAMTPIGKET 254
            L Y+G+R S+  +  +   + +  SI   K      V +P+    +        I K T
Sbjct: 130 TLYYTGMRVSEMLQLTIYDTKKSSISII-GKGSKHREVFVPNKLKTIWDNYLQVRIKKST 188

Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGATAHELMATY 311
                 +  +N        K  A  AGV+KS   AH  R       AD G     +    
Sbjct: 189 ALFTGKRGPINRKTVDSIIKTYAEAAGVDKSKAHAHNFRHLYCKNLADRGIDISTIADIA 248

Query: 312 GWKTVDQAETYTKGADRIRLGI 333
           G + ++    YT+      L I
Sbjct: 249 GHQNINTTRIYTRKTKEELLNI 270


>gi|27375557|ref|NP_767086.1| site-specific tyrosine recombinase XerC [Bradyrhizobium japonicum
           USDA 110]
 gi|34222842|sp|Q89X68|XERC_BRAJA RecName: Full=Tyrosine recombinase xerC
 gi|27348694|dbj|BAC45711.1| xerC [Bradyrhizobium japonicum USDA 110]
          Length = 321

 Score = 95.9 bits (237), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 38/280 (13%), Positives = 83/280 (29%), Gaps = 35/280 (12%)

Query: 85  GSLAVNSRISFESYF----DQIIRKSGD----FDYRKITTKHIRSGVESRKH---TPSSA 133
             L+  +  ++        D +    G+      +  +    +R+ +  R+       S 
Sbjct: 33  RRLSPKTLEAYGRDLRQCLDFLCNHWGERVTLKRFAALEATDVRAFMAMRRADDIAGRSL 92

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
           ++ L  +R   ++  R+    +    ++  PK      +P      ++         + R
Sbjct: 93  MRALAGLRSFGRFLEREGKGKVGALSAIRAPKVAKSLPKPLPMASAKRLADADERAGEER 152

Query: 194 ---------LAFEFLLYSGLRCSDSCRAGVQHL---QNNIFSIKTQKTGTIITVELPDGF 241
                         L  SGLR S++     + +         + T K      V +    
Sbjct: 153 ETWILARDAAVMALLYGSGLRISEALGLKRREVPKPGEGDVLVVTGKGNKTRMVPVLQNV 212

Query: 242 MKLLA--------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRK 291
           + L+           P      F+      ++     +  +      G+    + H +R 
Sbjct: 213 LALVQEYVSMCPYPLPAEGP-IFVGARGGPLSPRIIQLAMERLRGALGLPDSATPHALRH 271

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
             AT     G     +    G  ++   + YT G D  RL
Sbjct: 272 SFATHLLSRGGDLRAIQELLGHSSLSTTQIYT-GIDSERL 310


>gi|108799889|ref|YP_640086.1| phage integrase [Mycobacterium sp. MCS]
 gi|119868999|ref|YP_938951.1| phage integrase family protein [Mycobacterium sp. KMS]
 gi|108770308|gb|ABG09030.1| phage integrase [Mycobacterium sp. MCS]
 gi|119695088|gb|ABL92161.1| phage integrase family protein [Mycobacterium sp. KMS]
          Length = 379

 Score = 95.9 bits (237), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 45/330 (13%), Positives = 94/330 (28%), Gaps = 44/330 (13%)

Query: 48  MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSA-HWGSLAVNSRISF----ESYFDQI 102
              L     + E     +  P T+   + ++R S+         ++  +      + +  
Sbjct: 47  RKELKKVRDRIEGGAPAKDAPNTVSSWLKQWRASSLAASDRKETTKSLYATLSRKHLEG- 105

Query: 103 IRKSGDFDYRKITTKHIRSGVESRKHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCL 159
             + GD    ++    +   +   +      S+  Q  T +R     AVR   +A NP  
Sbjct: 106 -ARIGDKRLDRLKPSDVELLIVQLRGKNLSDSTVRQVYTVLRQALDVAVRDGLLAANPAS 164

Query: 160 SVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ- 218
            V+RP    +  +     D+ +       G +  L    +  +GLR  +        +  
Sbjct: 165 KVKRPGVARKEAKYLPAADVARLLDAAK-GLRYYLGVVLMATTGLRRGEVAGLLWSDVDL 223

Query: 219 --------------NNIFSIKTQKTG-TIITVELP------------DGFMKLLAMTP-- 249
                         +    +   KT  +   V L                 + LA     
Sbjct: 224 EKGELTVRHTLSRVDGKLVLTEPKTDRSRRRVPLHAGVVAQLKMHRTQQLQERLAAGDQW 283

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELM 308
                         ++        +  A K G+ +  AH +R  +A    ++G       
Sbjct: 284 RDTGAVLATEFGTLLDPRNLLRTVEIAAAKVGIEDVGAHTMRHSAAVAWLESGVHIKAAA 343

Query: 309 ATYGWKTVDQA-ETYTKGADR-IRLGIKNS 336
              G  ++    + Y   +D   R  +   
Sbjct: 344 DLLGHSSIAITGDLYGHTSDETARAAVDGL 373


>gi|302345845|ref|YP_003814198.1| site-specific recombinase, phage integrase family [Prevotella
           melaninogenica ATCC 25845]
 gi|302149964|gb|ADK96226.1| site-specific recombinase, phage integrase family [Prevotella
           melaninogenica ATCC 25845]
          Length = 418

 Score = 95.9 bits (237), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 70/208 (33%), Gaps = 10/208 (4%)

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           + ++A  + +  +   K A    Y+ I+    ++  + +       T +++ +  +   E
Sbjct: 199 SRNTASTYFSIFKAALKQAFIDGYLTIDLSAKIKGIQEQESRREYLTLDELNKLANTPCE 258

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI----FSIKTQKTGTIITVELPDGFMKL 244
               + A  F   +GLR  D  +     +             +KT  +  + + +   KL
Sbjct: 259 RDVLKRAALFSALTGLRHCDIQKLKWDEIAIEGNQAKLLFTQKKTKGVEYMPISEQAFKL 318

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302
                  ++  F         +       +A   KAG+ K  S H  R   AT+    G 
Sbjct: 319 CGEPRQPEQLVFEGLPNPSWISRPL----RAWIEKAGIQKHLSFHCFRHTFATLQLANGT 374

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIR 330
             + +    G   V   + Y K  D  +
Sbjct: 375 DIYTVSKMLGHTNVKTTQVYAKVVDEKK 402


>gi|145594863|ref|YP_001159160.1| phage integrase family protein [Salinispora tropica CNB-440]
 gi|145304200|gb|ABP54782.1| phage integrase family protein [Salinispora tropica CNB-440]
          Length = 322

 Score = 95.9 bits (237), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 49/308 (15%), Positives = 99/308 (32%), Gaps = 44/308 (14%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD----------FDYRKITTKHIRSGV 123
           LI ++         + ++  ++      +   + D               + ++ +RS  
Sbjct: 4   LIEDFLTDRATRKPSPHTVEAYRRDLRTVASIAADALTSPLPLDALPLAALHSRTLRSAF 63

Query: 124 ESRKHTPSSAI--QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM-Q 180
                T S+A   +  ++    F + V    VA NP  +V RP+      +P    D  +
Sbjct: 64  AHFAATRSAASVHRAWSTWNSFFVFLVADGVVAGNPMPAVGRPRAPLPRPKPLRGADTPE 123

Query: 181 QF---------KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK---TQK 228
           Q          +       +        L  GLR ++     V  L   +   +     K
Sbjct: 124 QLLTAVARVDGRQRDPWPQRDLAVLALALCGGLRLAEMLALRVASLAGRVGERRLDVAGK 183

Query: 229 TGTIITVELPDGFMKLLA------------MTPIGKETFFINNDKQKMNATQFSIWFKAK 276
            G    V +     ++LA             T        ++     +          + 
Sbjct: 184 GGRPRVVPVEPELDQVLADYLESCRRRFGSATVRPDAPLLMDRRGGPLRRGGLQYLVDSC 243

Query: 277 ATKAGVN------KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRI 329
             +AG+          H +R   AT  A+ GA+A E+M   G  ++  ++ Y +  A + 
Sbjct: 244 FRRAGIGDRVPQGARLHALRHTFATRLAEDGASAAEIMRLLGHVSLASSQAYIEVTAGQQ 303

Query: 330 RLGIKNSR 337
           R  ++ +R
Sbjct: 304 RAAVRANR 311


>gi|94267190|ref|ZP_01290806.1| Phage integrase [delta proteobacterium MLMS-1]
 gi|93452099|gb|EAT02779.1| Phage integrase [delta proteobacterium MLMS-1]
          Length = 406

 Score = 95.9 bits (237), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 47/341 (13%), Positives = 120/341 (35%), Gaps = 30/341 (8%)

Query: 11  VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT- 69
           +     R   ++ Y  +G  RRI L    + + + A  ++    +  ++ ++   K+   
Sbjct: 29  LVLPSGRRSWLLRYQFEGKPRRITLGEYPDMSLLQARNASEATRSIIKQGLDPALKRTEE 88

Query: 70  --------TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121
                   T+  L++EY         + + +         ++   G     +IT +    
Sbjct: 89  KTAHKTSPTVSDLLTEYW-DMELKE-SPSGKERRRLVEKDVLPPWGKRKVAEITRRDAAL 146

Query: 122 GVES-RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
            +++ R   P +  +    +  +F +A  +  +  +P + + + K +    R    ++++
Sbjct: 147 LLDTVRARAPVTGNRLQGVLVRMFNFAAERGVLEHSPLMGLRKKKEQPRS-RVLADKEIK 205

Query: 181 QFKSFWSEGSQP-------RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ--KTGT 231
                 +  +         +LA + +L +G R  + C      +  + ++I  +  K+  
Sbjct: 206 LLWDALALDNTAMDIYRVSKLALKMILLTGQRPGEVCGMTWDEIDGDTWNIPAERMKSKE 265

Query: 232 IITVELPDGFMKLL----AMTPIGKETFFINNDKQ--KMNATQFSIWFKAKATKAGVNK- 284
              V L    ++++      +P G    F ++  +   +     S        + GV + 
Sbjct: 266 PHNVPLGSMALEIIEQARRYSPRGSTFVFKSSHFKEGPITPHSLSKAILRHWQEMGVTER 325

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            + H +R+   T  A+ G          G K       Y +
Sbjct: 326 FTPHDLRRTLRTRLAEIGVDDVVGERVLGHKLQGIMAVYNR 366


>gi|320353450|ref|YP_004194789.1| integrase family protein [Desulfobulbus propionicus DSM 2032]
 gi|320121952|gb|ADW17498.1| integrase family protein [Desulfobulbus propionicus DSM 2032]
          Length = 357

 Score = 95.9 bits (237), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 52/316 (16%), Positives = 103/316 (32%), Gaps = 26/316 (8%)

Query: 49  SALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG- 107
            AL     +       +     L    +EY + A   +    +       F Q+    G 
Sbjct: 35  DALLWEAERPTEPAEQKTLTVCLLDWATEYLRHAE-QNFTGKTFDEKRIAFRQLFACPGI 93

Query: 108 --DFDYRKITTKHIRSGVESRK--HTPSSAIQFLTSMRVLFKWAVR-QEYVAINPCLSVE 162
                  ++T   ++  ++ +    + ++A +   ++   + W V+  +    NP   VE
Sbjct: 94  NPKESANRLTALQVQKALQRQSVSRSGNAANKDRKNLSAAWSWGVKFLDLPIDNPFSKVE 153

Query: 163 RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NN 220
           +   +       T +D  +      +  Q +L     L +G R  +  R     +     
Sbjct: 154 KFASERVERYVPTLDDFWKIFHIIED-DQDKLMLYCYLQTGARRDELFRLTWADVDFFRK 212

Query: 221 IFSIKTQKTGT----IITVELPDGFMKLLAMTPIG----KETFFINNDKQKMNATQFSIW 272
              +  +K          + + D  ++ L          KE  FI    QK++      W
Sbjct: 213 RIRLSWRKNKVGEWRSQWLSVKDDLVEWLLRHRKKSCDIKEHVFIRE--QKLSYQYRQHW 270

Query: 273 FKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            K    KAGV     HG+R   A+I A       E+       ++   + Y       RL
Sbjct: 271 LKRLCKKAGVKPFGFHGIRHLFASILAAQNVPLVEIQYMLRHTSLATTQRYIH-----RL 325

Query: 332 GIKNSRRISSVVDSDD 347
             +N   ++++    D
Sbjct: 326 KKENREVLAALPGLKD 341


>gi|310826020|ref|YP_003958377.1| hypothetical protein ELI_0397 [Eubacterium limosum KIST612]
 gi|308737754|gb|ADO35414.1| hypothetical protein ELI_0397 [Eubacterium limosum KIST612]
          Length = 359

 Score = 95.9 bits (237), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 48/294 (16%), Positives = 99/294 (33%), Gaps = 44/294 (14%)

Query: 91  SRISFESYFD-QIIRKSGDFDYRKITTKHIRSGV----ESRKHTPSSAIQFLTSMRVLFK 145
           +  ++       +I   G+++ + ITT+ ++  V    E     P++       +  + K
Sbjct: 44  TLENYRRQVRVHLIPMLGEYEVQDITTEVLQDFVFYLEEENGLNPTTVKNIFGRIATVLK 103

Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW--SEGSQPRLAFEFLLYSG 203
            A     +  NPC SV  PK      +   + +  + +      EGS+  L+    L+SG
Sbjct: 104 KAHEDGIIFENPCNSVVLPKANARTGKALNRLEQDKLEKVLSNDEGSKT-LSVYIALHSG 162

Query: 204 LRCSDSCRAGVQHLQ--NNIFSIK-------------TQKT----------GTIITVELP 238
           LR S+      + +   N    ++             T K+           ++ ++ + 
Sbjct: 163 LRISEVTALKWKDIDMENEFIYVRHSFQRISQQMTDGTHKSSLLLGKPKSLKSVRSIPMN 222

Query: 239 DGFM-------KLLAMTPIGKETFFINN-DKQKMNATQFSIWFKAKATKAGVNKS-AHGV 289
           D          K L       E F I+  +    +      +F      A ++    H +
Sbjct: 223 DLLAMKIKEYYKGLEKWQRKGEMFVISKGNGSFYDVRTIQRYFNDVCKVACIDHHHFHDL 282

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRL-GIKNSRRISS 341
           R   AT +   G     +    G   +    + Y   +D  +   I+   R++ 
Sbjct: 283 RHTFATNAKACGIDIQLISEMLGHAQIKTTMDIYVHPSDTDKQNAIQLMNRLNK 336


>gi|295087104|emb|CBK68627.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A]
          Length = 470

 Score = 95.9 bits (237), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 33/268 (12%), Positives = 88/268 (32%), Gaps = 21/268 (7%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHTPSSAIQFLTSMRVL 143
           +  +   + +  ++++          ITT  IR+ +    E  + +  +           
Sbjct: 209 SDKTLAYYRNTIERLLVTL-SMAICHITTSDIRTYLSDYQEEHQSSKVTIDNMRRIFSSF 267

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203
           F W   ++Y+A +P   + + K  +      + E ++Q +   +   +     +FL  +G
Sbjct: 268 FAWLEDEDYIAKSPVRRIHKVKTDSLVKEVLSDEQLEQLRDSCT-NKRDLAIIDFLSSTG 326

Query: 204 LRCSDSCRAGVQHLQNNIFSIKT----QKTGTIITVELPDG----FMKLLAMTPIGKETF 255
           +R  +  +   + +    F  +      K      V           + L          
Sbjct: 327 IRVGELVKLNREDID---FHERQCVVFGKGNKERVVYFNARTKLHLQQYLNGRTDDNPAL 383

Query: 256 FINNDKQK--MNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYG 312
           F++       +  +   +  +       + K   H  R+  AT++ D G    ++    G
Sbjct: 384 FVSLHSPHTRLTISGVEVRIRKLGHTLSMPKVHPHKFRRTLATMAIDKGMPIEQVQRLLG 443

Query: 313 WKTVDQAETYTKGADRIRLGIKNSRRIS 340
              +D    Y    ++  + + + + + 
Sbjct: 444 HVRIDTTLHYA-IVNQNNVKLAHKKYLG 470


>gi|163792312|ref|ZP_02186289.1| Integrase [alpha proteobacterium BAL199]
 gi|159182017|gb|EDP66526.1| Integrase [alpha proteobacterium BAL199]
          Length = 323

 Score = 95.9 bits (237), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 42/285 (14%), Positives = 90/285 (31%), Gaps = 32/285 (11%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYF----DQIIRKSGDF----DYRKITTKHIRSGVESR 126
             E+ KS     ++ ++  ++        + +    GD         +     R+ +  R
Sbjct: 29  WREWLKSE--KRVSPHTLAAYGRDLGGFVNFLAGHLGDTVNLSALGTLQPADFRAWLARR 86

Query: 127 KHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER-PKRKTEGIRPWTKED---- 178
                  SS  + L+++R  F++  R+   + N  + V R P+      +  T ++    
Sbjct: 87  AGGGLEKSSTARALSTIRGFFRFLERRGLAS-NAAVGVVRGPRVPRSIPKALTVDEARDA 145

Query: 179 ---MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
              + +        ++       L   GLR  ++     + +  +     T K G    V
Sbjct: 146 LESVGELTDEPWIAARDSAVLTLLYGCGLRVGEALDLNRRVVPLSDTLTITGKGGKARMV 205

Query: 236 ELPD----GFMKLLAMTPIG---KETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSA 286
            +           L   P      +  F+     ++ A +     +      G+    + 
Sbjct: 206 PVLPVVRRAVADYLERCPYRLGPDDPLFVGVRGGRLGARRVQQSIQTLRCWLGLPETATP 265

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           H +R   AT     G     +    G  ++   + YT   D  RL
Sbjct: 266 HALRHSFATHLLAGGGDLRAIQELLGHASLSTTQRYT-EVDAARL 309


>gi|198277079|ref|ZP_03209610.1| hypothetical protein BACPLE_03287 [Bacteroides plebeius DSM 17135]
 gi|198269577|gb|EDY93847.1| hypothetical protein BACPLE_03287 [Bacteroides plebeius DSM 17135]
          Length = 418

 Score = 95.9 bits (237), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 36/226 (15%), Positives = 73/226 (32%), Gaps = 11/226 (4%)

Query: 111 YRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170
           +R+      + G +    + ++A  + +  +   K A    Y+ I+    V+  + +   
Sbjct: 183 FRQFIMNAPQGGTKRGTISQNTAATYFSIFKAGLKQAFIDGYLTIDISAKVKGIQERESR 242

Query: 171 IRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----NNIFSIKT 226
               T E++ +      +    R A    L +G+R  D  +     ++        +   
Sbjct: 243 REYLTVEELNRLAQTPCDPLLKRAALFSAL-TGIRHCDIQKLKWSEVEMFNGGYRLNFTQ 301

Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284
           QKT  +  + + +    L      G+   F                 K     AG+ K  
Sbjct: 302 QKTKGVEYMPISEQAYNLCGEPKEGELLVFAGLPDPSWINRP----VKKWIEAAGITKHI 357

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
           + H  R   AT+    G   + +    G   V   + Y K  D  +
Sbjct: 358 TFHCFRHSYATLQLAGGTDIYTVSKMLGHTNVRTTQVYAKVVDEKK 403


>gi|154499119|ref|ZP_02037497.1| hypothetical protein BACCAP_03111 [Bacteroides capillosus ATCC
           29799]
 gi|150271959|gb|EDM99185.1| hypothetical protein BACCAP_03111 [Bacteroides capillosus ATCC
           29799]
          Length = 417

 Score = 95.9 bits (237), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 58/362 (16%), Positives = 112/362 (30%), Gaps = 61/362 (16%)

Query: 22  IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKS 81
            YY R  +G+R  L     +     Y   L     K+       K   TL    +++ K 
Sbjct: 25  RYYDR--NGQRKYLYNSSLAVLKKEYKDVL-----KQVSTRPVVKTEYTLDEWYAQWIKV 77

Query: 82  AHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHT---PSSAIQFL 137
             +  +  ++R+ +   +   +    G +   +ITT  ++  +   K          +  
Sbjct: 78  YKY-EVRDSTRLQYSHVYTKHVSPALGHYLLTQITTLEVKRFLNDMKKRGFSFEMRNKAR 136

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE 197
             +  LF  A+  ++   NP   ++  + +    R  +KE+   F      G+     F 
Sbjct: 137 IVLLDLFDKAIMDDFAFKNPARGIKVVRDERVEPRVLSKEEQVDFFDTCK-GTFYEELFT 195

Query: 198 FLLYSGLRCSDSCRAGVQHLQ---------------------NNIFSIKTQKTGTIITVE 236
             + +GLR  +        +                         F I   KT T +   
Sbjct: 196 VAVLTGLRPGELFALRWSDVNLKEKYLDVTRTLLYQKLEGDTGKAFHIHPPKTATSLRRV 255

Query: 237 LPDGFMKLLAMTPIGK-----------------ETFFINNDKQKMNATQFSIWFKAKATK 279
             D   KL  M+   K                 +  F+      +N++ +S   +     
Sbjct: 256 YFDERCKLALMSQFRKKSNISLRETSSPLEGLEDLLFVTKYNTPLNSSLYSSAIQRIVDL 315

Query: 280 AGVNKSA---------HGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRI 329
              ++SA         H  R   AT + +A      +    G  T+    + YT   +  
Sbjct: 316 INESRSAVDQFETFSGHCFRHTYATRAFEADVDPKVVQKQLGHATLKMTMDLYTHLFEDK 375

Query: 330 RL 331
           +L
Sbjct: 376 KL 377


>gi|71901496|ref|ZP_00683583.1| Phage integrase [Xylella fastidiosa Ann-1]
 gi|71728752|gb|EAO30896.1| Phage integrase [Xylella fastidiosa Ann-1]
          Length = 353

 Score = 95.9 bits (237), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 46/292 (15%), Positives = 96/292 (32%), Gaps = 30/292 (10%)

Query: 7   LPPFVTKER--TRHGKII--YYF--RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60
           LPP + +     + GK+   +Y+  R   GRRI +P   +        +AL       E 
Sbjct: 10  LPPRMLRRIRLMKSGKVWESFYYNGRTPEGRRIEIPLGRDLNEAKRKWAALECKEAPAE- 68

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
                     L+++   Y +       A  ++     +   + +     +   +T +HI 
Sbjct: 69  -------TGLLRFIFERYEREIIPLK-APVTQRVNRGFLTTLRKVFDVVNIDNVTPQHIA 120

Query: 121 SGVESRK-HTPSSAIQFLTSMRVLFKWAVRQEYVAI-NPCLSVERPKRKTEGIRPWTKED 178
              + R+  TP  A + ++    ++  A    Y    NP   V + K           +D
Sbjct: 121 QYRDKRRLRTPVQANREISLFSHIWNMAREWGYTEKENPVKGVRKNKETPRDFYA---DD 177

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
                 +     + R A +    +G R +D  +     +++    ++  KTG  + + L 
Sbjct: 178 AVWMAVYAKASEELRDAMDLSYLTGQRPADILKMRFTDIKDGALEVQQNKTGKKLRILLE 237

Query: 239 D-----GFMKLLAMTPIGKETFF-----INNDKQKMNATQFSIWFKAKATKA 280
                    K++      +   F        +   +N       F +   +A
Sbjct: 238 RSGIRTELGKVIDRIKARERKVFSVFLVATPNGTPLNKQTLPSRFNSARARA 289


>gi|302339270|ref|YP_003804476.1| integrase family protein [Spirochaeta smaragdinae DSM 11293]
 gi|301636455|gb|ADK81882.1| integrase family protein [Spirochaeta smaragdinae DSM 11293]
          Length = 416

 Score = 95.9 bits (237), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 42/265 (15%), Positives = 85/265 (32%), Gaps = 43/265 (16%)

Query: 103 IRKSGDFDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
            +   +    K+    +            P +  + L+ ++ + + A+ QE +  +P + 
Sbjct: 126 CKDFVNKPIAKMRRSDVLEFRSFMLDRVGPRTVNKALSIVKAVIREAIFQEVIDRDPTIG 185

Query: 161 VERPKR-KTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQ 215
           V + K  + +    +TKE++         G          F     +G+R S+      +
Sbjct: 186 VSKVKLTEKKEPGVFTKEELLLMFPEKGIGPWKSITDHTVFLTAASTGMRRSEILALRWE 245

Query: 216 HLQNN--------------IFSIKTQKTGTIITVELPD----GFMKLLAMTPIGKET--F 255
           ++                 +  I   K      V +P         L   +P  K++   
Sbjct: 246 NVNLEKQFINVVEAFKDYRMIEIGKPKWERSRVVPIPKKLVTRLKDLRDQSPYAKDSDYV 305

Query: 256 FINNDKQKMNATQFSIWFKAKATKAGV----------------NKSAHGVRKFSATISAD 299
           F   D   +  T +S  F++     GV                N + H  R    T+   
Sbjct: 306 FCYKDGTHLGGTWWSKHFRSACIAIGVIKAKKKVKENEDPNPRNLTPHSFRHTLNTLLLS 365

Query: 300 AGATAHELMATYGWKTVDQAETYTK 324
            G  + ++ AT GW +    + YT 
Sbjct: 366 NGYDSGKIRATLGWTSEKIQDNYTH 390


>gi|239627043|ref|ZP_04670074.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239517189|gb|EEQ57055.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 298

 Score = 95.9 bits (237), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 53/279 (18%), Positives = 97/279 (34%), Gaps = 24/279 (8%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
           I EY +       +  +   +  Y  Q    +GD    K      ++ +  R  TP +  
Sbjct: 14  IEEYGQWLESCERSRETVKKYRHYLKQFKEFTGDGPVTKEVVLLWKADLRER-LTPVTIN 72

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP----WTKEDMQQFKSFWSEGS 190
             + ++   FK+     +   + C S +  K       P     TK++  +         
Sbjct: 73  CVIAALNGFFKYC---GW---DGCES-KFLKISKSSFYPERKELTKDEYGRLVKTAFANG 125

Query: 191 QPRLAF--EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248
             RLA   E +  SG+R S+     V+ ++     I+    G I TV L      +L   
Sbjct: 126 NERLALVLETICVSGIRVSELSFITVEAIRRGQAEIEC--KGRIRTVLLTRQLCTILQSY 183

Query: 249 PIGKE----TFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAG 301
              K       F+    + ++ +      KA   +AGV       H +R   A    +  
Sbjct: 184 ASKKNISTGMIFVTKSGKALDRSNIWREMKALGMEAGVKNEKIFPHNLRHLFARTYYEIE 243

Query: 302 ATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSRRI 339
               +L    G + ++    YTK +  + RL ++  R +
Sbjct: 244 KNLSKLADILGHRDINTTRIYTKESGSQHRLQLEKMRLL 282


>gi|118511775|emb|CAD20932.2| IntI1 integrase [Salmonella enterica subsp. enterica serovar
           Infantis]
          Length = 337

 Score = 95.9 bits (237), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 42/306 (13%), Positives = 94/306 (30%), Gaps = 62/306 (20%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129
           ++ + R+   +   ++ +  ++ ++    IR  G      + +  + + +      RK +
Sbjct: 16  VLDQLRERIRYLHYSLRTEQAYVNWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75

Query: 130 PSSAIQFLTSMRVLFK--WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            S+  Q L ++   +         ++       + RP+         T +++ +   F  
Sbjct: 76  VSTHRQALAALLFFYGKVLCTDLPWLQ-----EIGRPRPSRRLPVVLTPDEVVRILGFL- 129

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
           EG   RL  + L  +G+R S+  +  V+     +    ++  K      + LP+     L
Sbjct: 130 EGEH-RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSL 188

Query: 246 AMTPIGKETFFINN---------------------------------------------D 260
                    +++ +                                              
Sbjct: 189 REQLSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVR 248

Query: 261 KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           +  M    F   FK    +AG+ K  + H +R   AT    +G     +    G   V  
Sbjct: 249 RHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVST 308

Query: 319 AETYTK 324
              YT 
Sbjct: 309 TMIYTH 314


>gi|325293997|ref|YP_004279861.1| site-specific tyrosine recombinase XerC [Agrobacterium sp. H13-3]
 gi|325061850|gb|ADY65541.1| site-specific tyrosine recombinase XerC [Agrobacterium sp. H13-3]
          Length = 311

 Score = 95.9 bits (237), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 44/275 (16%), Positives = 84/275 (30%), Gaps = 29/275 (10%)

Query: 85  GSLAVNSRISFESYFD--------QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI-- 134
             LA N+  ++E             I + +   D   +    +R+ + SR+   + A   
Sbjct: 27  RRLADNTVEAYERDTRQFLTFLTGYIGKPASIADIADLRPVDLRAFLASRRKEGAGARSL 86

Query: 135 -QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM-------QQFKSFW 186
            + L  +R    +  ++  V      ++  PK+     +P T            Q     
Sbjct: 87  GRHLAGLRSFLHYLQKKRLVNAAGATAMRSPKQPKSLPKPLTDRQALKITTTEAQLNEEP 146

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLL 245
              ++       L   GLR S++          +  S++ T K      V L     + +
Sbjct: 147 WIAARNAAVLSLLYGCGLRISEALGLAPADFTPDARSLRITGKGNKTRMVPLLAVVTEAV 206

Query: 246 AMTP-------IGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATI 296
                         +  F+     K+         +      G+  N + H +R   AT 
Sbjct: 207 EAYKKLCPYHLAADQPLFLGARGGKLQPAIIQREMQKLRGAFGLPENATPHALRHSFATH 266

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
               G     +    G  ++   + YT G D  RL
Sbjct: 267 LLAGGGDLRTIQELLGHASLSTTQIYT-GVDTARL 300


>gi|255012810|ref|ZP_05284936.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_7]
          Length = 406

 Score = 95.9 bits (237), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 46/276 (16%), Positives = 99/276 (35%), Gaps = 28/276 (10%)

Query: 90  NSRISFE---SYFDQIIRK---SGDFDYRKITTKHIRSGVESRKH----TPSSAIQFLTS 139
            +   +E    Y ++ I+K     D     +    I       K       +SAI  L +
Sbjct: 132 KTVQRYETTTRYLEEFIKKEYQLSDIALNNLEANFISKFDAFLKIEKGCAQNSAITRLKN 191

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLAF 196
           ++ + + A+  +++  +P  +  R K +       T ++++   +         Q R  F
Sbjct: 192 LKKIIRIALENDWIKKDP-FAYYRFKLEETDPEFLTMDEIKIILAKEFTIKRVEQVRDVF 250

Query: 197 EFLLYSGLRCSDSCRAGVQH-LQNN----IFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251
            F +++GL  SD      +H +++N          QKT  +  + +      +L      
Sbjct: 251 VFCIFTGLAFSDVKDLSPEHLVKDNKGELWIRKNRQKTKIMCNIPVLPVAASILDKY--- 307

Query: 252 KETFFINNDKQK-MNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS-ADAGATAHEL 307
           K+           +   + + + K  A   G++K  S H  R   AT      G +   +
Sbjct: 308 KDVVECTGKLLPVLCNQRMNSYLKEIADVCGIHKNLSTHTARHSYATSICLANGVSMENV 367

Query: 308 MATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343
               G       + Y +  D+     K+ ++++S +
Sbjct: 368 AKMLGHADTSVTKHYARVLDQN--IFKDMQKVNSCL 401


>gi|71733392|ref|YP_273045.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. phaseolicola 1448A]
 gi|71553945|gb|AAZ33156.1| site-specific recombinase, phage integrase family [Pseudomonas
           syringae pv. phaseolicola 1448A]
          Length = 318

 Score = 95.9 bits (237), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 45/270 (16%), Positives = 91/270 (33%), Gaps = 30/270 (11%)

Query: 89  VNSRISFESYFDQII---RKSGDFDYRKITTKHI---RSGVESRKHTPSSAIQFLTSMRV 142
             +R ++++   +       +G  ++R +   H+   R+ +E R  + ++  + L ++  
Sbjct: 38  PRTRRAYQADLREFCSFVDLAGAEEFRVVNRAHVLAWRAQLERRALSGATIRRKLATLAS 97

Query: 143 LFKWAVRQE-YVAINPCLSVERPKRKT-EGIRPW-----TKEDMQQFKSFWSEGSQPRLA 195
            F + +        N    V RP  +T EG  P      TK  +        +G + R  
Sbjct: 98  PFDYLLDNNALAGGNQVHGVARPPVETNEGKTPALGGDQTKRLLDAPDDESLQGVRDRAI 157

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ---KTGTIITVELPDGFMKLLAMTPIGK 252
              LLY GLR  +        LQ        +   K G I  + L     + + +  +  
Sbjct: 158 LAVLLYQGLRREELSLLQTGDLQERRGVKHLRIHGKGGKIRYLPLHPVAAERIYVYLVRD 217

Query: 253 E-------TFFINNDKQ----KMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISA 298
                     F +   +     +            A+ A ++      HG+R  +AT + 
Sbjct: 218 GDRAQTPGALFRSLRGKTSGTGITGKGVYGVVSKWASAAQIHVDGLGVHGLRATAATNAL 277

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADR 328
           +  A   ++    G   +     Y +   R
Sbjct: 278 EHDADIAKVQIWLGHANISTTRLYDRRGHR 307


>gi|302864521|ref|YP_003833158.1| integrase family protein [Micromonospora aurantiaca ATCC 27029]
 gi|302567380|gb|ADL43582.1| integrase family protein [Micromonospora aurantiaca ATCC 27029]
          Length = 383

 Score = 95.9 bits (237), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 52/311 (16%), Positives = 102/311 (32%), Gaps = 38/311 (12%)

Query: 66  KKPTTLKWLISEYRKSAHWGS-LAVNSRISFE-SYFDQIIRKSGDFDYRKITTKHIRSGV 123
            +P T++  ++E+ +          ++   +  +    ++   G     ++T + ++  +
Sbjct: 67  AQPRTVEAWLTEWLRDVKAHDGTRPSTLARYRLAVTKHLVPGLGRVKLDRLTPREVQRFL 126

Query: 124 --ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
                K  P+S I+    +RV    A R + VA N   + + P       R  T E+ +Q
Sbjct: 127 TGLRGKLAPASIIKVHAVLRVALADAERMDLVARNVAKAAKPPALGRVERRALTPEEAKQ 186

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---------------NNIFSIKT 226
             S  + G +    F   L +GLR ++        +                +       
Sbjct: 187 LLSVLT-GDRLESLFVLALATGLRRAELLGLRWSDVDLPGKALFVRQTVQRTDRGLEFVP 245

Query: 227 QKTG-TIITVELPDGFMKLLAMTPIGK--------------ETFFINNDKQKMNATQFSI 271
            KT  +   + L    ++ L    + +                 F +     M     + 
Sbjct: 246 PKTHRSSRPLPLSALAVRALEAQRVRQARERLAAGELWSDLGLVFASTIGTAMEPRNVNR 305

Query: 272 WFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQ-AETYTKGA-DR 328
            F+     AG++    H +R   AT   D G     +M   G  T+   A+TY      R
Sbjct: 306 RFEQLRAAAGLDWLHLHDLRHAFATFLLDQGEELRTVMELLGHSTIRMTADTYGHVLPAR 365

Query: 329 IRLGIKNSRRI 339
            R       R+
Sbjct: 366 ARQAASAIDRV 376


>gi|301162166|emb|CBW21711.1| putative bacteriophage integrase [Bacteroides fragilis 638R]
          Length = 371

 Score = 95.9 bits (237), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 47/290 (16%), Positives = 96/290 (33%), Gaps = 35/290 (12%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRK--------SGDFDYRKITTK---HIRSGVE 124
             Y+  A +       R     +  +             G   + +I        R  + 
Sbjct: 87  DRYKLKADFLEY---YRKQLRKHDQKWEFVYLHFRNFVHGKCTFEEIDIDLCNKFREYLL 143

Query: 125 SRKH-------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
           S K        T +SA  + ++ R   K   R   +  N    +++ + +       + E
Sbjct: 144 SAKKLRRNGPITRNSASGYWSTFRGFLKILYRNGMIKTNVNDFLDKIETEDVVKEYLSVE 203

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-----QNNIFSIKTQKTGTI 232
           ++ +      +    + A  F   + LR SD      + +           I TQK    
Sbjct: 204 ELYKLAETPCKKPILKTASLFSCMTSLRISDILSLCWEDIVDYSAGGKCVHIITQKNKAE 263

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290
             + + +  + L+  +   K   F     + +  +   I  K     AG+ K  + H  R
Sbjct: 264 DIIPISEEALGLIGYSSEKKGLVF-----KGLMRSWTQIPMKEWIRSAGITKNITFHSYR 318

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
           +  AT+ A AG     + +    K++   + Y K  D  +   + S++I+
Sbjct: 319 RTFATLQAAAGTDIRTIQSIMAHKSITTTQRYIKVVDANKR--EASKKIT 366


>gi|190893664|ref|YP_001980206.1| tyrosine site-specific integrase/recombinase protein [Rhizobium
           etli CIAT 652]
 gi|190698943|gb|ACE93028.1| tyrosine site-specific integrase/recombinase protein [Rhizobium
           etli CIAT 652]
          Length = 383

 Score = 95.9 bits (237), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 49/274 (17%), Positives = 87/274 (31%), Gaps = 34/274 (12%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTK-----HIRSGVESRKHTPSSAIQFLTS 139
              A N+  S+E   D I         R             + +  +   PSS  + L +
Sbjct: 86  RGAAANTLQSYERDLDDIRSFLNGRSIRLTEAASADLSAYLASLARQGFKPSSQARRLAA 145

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-------SEGSQP 192
           MR  +K+   +     +P   ++ PK+     +    E++ +  S         + G   
Sbjct: 146 MRQFYKFLYAEGIRTDDPTGVLDAPKKGRPLPKTMGVEEVSRLLSQAQAEADDPAPGQLQ 205

Query: 193 RLAFEFL----LYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLL-- 245
           RL    L      +G+R S+      + L     F +   K      V L    +K L  
Sbjct: 206 RLRMLALLELLYATGMRVSELVSLPARVLDQEGRFLMIRGKGNKERLVPLSQSAIKALKS 265

Query: 246 ----------AMTPIGKETFFINNDKQK--MNATQFSIWFKAKATKAGVN---KSAHGVR 290
                     A     +  F  +   ++  +    F+   K  A +AG+     S H +R
Sbjct: 266 YGRLLAAENAAAKEPQESPFLFSAASKEGYLPRQVFARDLKNLAIRAGLTPSLISPHVMR 325

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              A+     GA    +    G   +   + YT 
Sbjct: 326 HAFASHLLANGADLRVVQELLGHSDISTTQIYTH 359


>gi|270296259|ref|ZP_06202459.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270273663|gb|EFA19525.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 418

 Score = 95.9 bits (237), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 36/226 (15%), Positives = 73/226 (32%), Gaps = 11/226 (4%)

Query: 111 YRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170
           +R+      + G +    + ++A  + +  +   K A    Y+ I+    V+  + +   
Sbjct: 183 FRQFIMNAPQGGTKRGTISQNTAATYFSIFKAGLKQAFIDGYLTIDISAKVKGIQERESR 242

Query: 171 IRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----NNIFSIKT 226
               T E++ +      +    R A    L +G+R  D  +     ++        +   
Sbjct: 243 REYLTVEELNRLAQTPCDPLLKRAALFSAL-TGIRHCDIQKLKWSEVEMFNGGYRLNFTQ 301

Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284
           QKT  +  + + +    L      G+   F                 K     AG+ K  
Sbjct: 302 QKTKGVEYMPISEQAYNLCGEPKEGELLVFAGLPDPSWINRP----VKKWIEAAGITKHI 357

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
           + H  R   AT+    G   + +    G   V   + Y K  D  +
Sbjct: 358 TFHCFRHSYATLQLAGGTDIYTVSKMLGHTNVRTTQVYAKVVDEKK 403


>gi|326331572|ref|ZP_08197862.1| integrase [Nocardioidaceae bacterium Broad-1]
 gi|325950828|gb|EGD42878.1| integrase [Nocardioidaceae bacterium Broad-1]
          Length = 417

 Score = 95.5 bits (236), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 63/395 (15%), Positives = 112/395 (28%), Gaps = 69/395 (17%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSAL---------TGSTPKREYINSPRKKPT 69
           G+I   +    GRR   P   E +                  TG TP +      + +  
Sbjct: 21  GRIQARYTGPDGRRHPAPMTFEDSDAATAWLLRERRLLEEDPTGWTPPKARAAKKKSQAV 80

Query: 70  TLKWLISEYRKSAHWGS--LAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESR 126
           T       +  +       LA  +R  ++   D+ I+    +   + IT + +    ++ 
Sbjct: 81  TFGAFAERWLLTRKVKGRPLAGRTRDHYQDLLDRFILPTFEETVVKHITPEMVDDWYDAT 140

Query: 127 K-HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI--RPWTKEDMQQFK 183
              TP+        +R + K AV +  +  NP   V      +        T  ++    
Sbjct: 141 ALDTPTYRAHAYGLLRTILKTAVERNVIPANPAH-VRGAGSVSAAHDVETATLNEVATIV 199

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ---------------- 227
           +      + RL      +   R  +      + +      I+ +                
Sbjct: 200 AMMPA--KQRLMILLGAWCSNRYGEIAELRRRDIDLKRMVIRVRREVVWVKDADGRYVAT 257

Query: 228 ----KTGT-IITVELPDGFMKLL------AMTPIGKETFFINNDKQKMNATQFSI----- 271
               KT        +P   +  +                F N    ++  + F       
Sbjct: 258 VKAPKTDAGSRDAPIPPHLVPDIKDHLKHHAADGLDGLLFPNAQGGQIRHSTFYGQAPVI 317

Query: 272 -------------WFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
                        W+ A+      +   H +R  + T +A AGAT  ELMA  G  T   
Sbjct: 318 DKKTKKIRRKGHGWYAARHAAGRPDLHFHDLRHTALTNAAIAGATIAELMALAGHSTPAA 377

Query: 319 AETYTKGA-DR-----IRLGIKNSRRISSVVDSDD 347
           A  Y   A DR      RL       + +   S  
Sbjct: 378 AMRYQHAARDRMQDLAKRLSEMAVGELGANEGSSR 412


>gi|315506755|ref|YP_004085642.1| tyrosine recombinase xerd [Micromonospora sp. L5]
 gi|315413374|gb|ADU11491.1| tyrosine recombinase XerD [Micromonospora sp. L5]
          Length = 323

 Score = 95.5 bits (236), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 87/278 (31%), Gaps = 39/278 (14%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTK-------HIRSGVESRKHTP----SSA 133
             L+ N+  S+    D+ +          +          H+          P    SSA
Sbjct: 27  RGLSANTLASYRRDLDRYLATLAAAGVDDLAAAGPAQVEAHLARLRAGDDDHPPLAVSSA 86

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW------- 186
            +  +++R L ++A+R+     +P   V  P       R    + + +            
Sbjct: 87  ARAASAVRGLHRFALREGLAGADPSRDVRPPAPPRRLPRALPVDAVLRLLEAAGTPGASG 146

Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVEL----P 238
              +   + R   EFL  +G R S++  A V  L  +  ++    K G    V +     
Sbjct: 147 DAAARALRDRALLEFLYGTGARISEAVGAAVDDLDLDAGTVLLRGKGGRTRLVPVGGYAA 206

Query: 239 DGFMKLL-------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK------S 285
           D     L            G    F+N     +         +  A +AG+        S
Sbjct: 207 DALRAWLVRGRPALLAAGRGTHAVFVNARGGPLTRQGAWAVLRTAAARAGLPVDGPDAVS 266

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
            H +R   AT   D GA    +    G  +V   + YT
Sbjct: 267 PHTLRHSYATHLLDGGADVRVVQELLGHASVTTTQVYT 304


>gi|307610879|emb|CBX00496.1| prophage dlp12 integrase [Legionella pneumophila 130b]
          Length = 324

 Score = 95.5 bits (236), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 41/246 (16%), Positives = 81/246 (32%), Gaps = 11/246 (4%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLF 144
              ++ +     ++ D  +R     D  +   + I    E+   + ++  + L  +R + 
Sbjct: 71  HKRSLETDKYHLAWLDSFLRAKKLSDIDRDLIEFIAKKKEAEHVSLTTVNRVLELVRAIL 130

Query: 145 KWA-VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203
             A     ++   P   +   K + + IR  TKE+            +   +F     +G
Sbjct: 131 NRAHKEWGWLDKTPI--IRMRKIENKRIRWLTKEEANLLLKELPPHLEAMASFTLA--TG 186

Query: 204 LRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN 259
           LR S+  +     +  +    +      K+   I V L    + +L        T+    
Sbjct: 187 LRESNVTQLKWSEINLDKKHALIHADESKSKRPIPVPLNKQAISILKAQQGRNSTYVFTY 246

Query: 260 DKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           +   +       W K    +AG+N    H +R   A+     G   HEL    GW   + 
Sbjct: 247 NGNPVTRCNNHAWQK-ALIRAGINDFRWHDLRHTWASWHVQNGTPLHELQQLGGWSNYEM 305

Query: 319 AETYTK 324
              Y  
Sbjct: 306 VLRYAH 311


>gi|218688736|ref|YP_002396948.1| Integrase [Escherichia coli ED1a]
 gi|218426300|emb|CAR07125.1| Integrase [Escherichia coli ED1a]
          Length = 335

 Score = 95.5 bits (236), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 42/239 (17%), Positives = 81/239 (33%), Gaps = 22/239 (9%)

Query: 94  SFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQ 150
           ++    ++I R+  D    ++T K +      +      PSS  + L ++  +F   +  
Sbjct: 86  TYRVRLEKINREMRDPCASEMTRKFMLGYRSDKLQAGLMPSSVNRDLCALSAMFTSLIDA 145

Query: 151 E-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDS 209
           E +   NP   + + K +   +   + +++ +      EG   R+A    L +G R  ++
Sbjct: 146 EVFHNENPVRGIRKLKVRNTEMAFLSDDEIDRLLERL-EGDARRVAV-LCLSTGARWGEA 203

Query: 210 CRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF 269
                +H+  N       K G    V + D  +              I   K  +     
Sbjct: 204 AGLRGEHIVGNRVMFFNTKNGKSRAVPVSDTVLS------------LIKTRKTGLLYQAD 251

Query: 270 SIWFKAKATKAGVNK----SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            I F+    +   +     + H +R   AT     G     L    G  T+ Q  TY  
Sbjct: 252 YIRFRDILQEVKPDLPKGQATHVMRHTFATHFMMNGGNIVTLQRILGHTTIQQTMTYAH 310


>gi|89108420|ref|AP_002200.1| predicted defective integrase [Escherichia coli str. K-12 substr.
           W3110]
 gi|85675030|dbj|BAE76475.1| predicted defective integrase [Escherichia coli str. K12 substr.
           W3110]
 gi|260449299|gb|ACX39721.1| integrase family protein [Escherichia coli DH1]
 gi|315136218|dbj|BAJ43377.1| predicted defective integrase [Escherichia coli DH1]
          Length = 398

 Score = 95.5 bits (236), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 45/317 (14%), Positives = 97/317 (30%), Gaps = 64/317 (20%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK-ITTKHIRSGVESR-- 126
           T+K L  ++        +A  S  ++ +    I+   G+ +    I  + +    +    
Sbjct: 52  TIKELAEKFLALKE-TEVAKTSLNTYRAVIKNILSIIGEKNLASSINKEKLLEVRKELLT 110

Query: 127 --------------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
                           +  +   ++T++  +F++ V   Y+A NP   +   K       
Sbjct: 111 GYQIPKSNYIVTQPGRSAVTVNNYMTNLNAVFQFGVDNGYLADNPFKGISPLKESRTIPD 170

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK----- 225
           P ++E+  +         Q +  +   +Y+G+R  + C  G + +   N    I+     
Sbjct: 171 PLSREEFIRLIDAC-RNQQAKNLWCVSVYTGVRPGELCALGWEDIDLKNGTMMIRRNLAK 229

Query: 226 --------TQKTGTIITV--ELPDGFMKLLAMTPIGKETFF------------------- 256
                      T  +I +     D     + +T + KE                      
Sbjct: 230 DRFTVPKTQAGTNRVIHLIKPAIDALRSQMTLTRLSKEHIIDVHLREYGRTEKQKCTFVF 289

Query: 257 -------INNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELM 308
                  + N             + A   +AG+ ++ ++  R   A  S  AGA    + 
Sbjct: 290 QPEVSARVKNYGDHFTVDSIRQMWDAAIKRAGLRHRKSYQSRHTYACWSLTAGANPAFIA 349

Query: 309 ATYGWKTVDQA-ETYTK 324
              G        + Y K
Sbjct: 350 NQMGHADAQMVFQVYGK 366


>gi|325579064|ref|ZP_08149020.1| xylulose-5-phosphate/fructose-6-phosphate phosphoketolase
           [Haemophilus parainfluenzae ATCC 33392]
 gi|325159299|gb|EGC71433.1| xylulose-5-phosphate/fructose-6-phosphate phosphoketolase
           [Haemophilus parainfluenzae ATCC 33392]
          Length = 399

 Score = 95.5 bits (236), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 63/346 (18%), Positives = 126/346 (36%), Gaps = 28/346 (8%)

Query: 17  RHGKIIYYFR-----KGHGRRIRLPYP-HESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
           R GK  Y           GRRIR      +          L   + K E +N  ++   T
Sbjct: 39  RSGKNKYGVWQIDFTTPSGRRIRSSSGRTDKRLAQELHDKLKAESYKVERLN--KQPERT 96

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT- 129
           ++  +  + + A           +   +      + G  +   +T+  I + + + K T 
Sbjct: 97  VEDALICFLEDAE----HQKDLETKIHHAQYWRDRIGHKNLSSLTSDDIYNNLPTHKRTG 152

Query: 130 ----PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW-TKEDMQQFKS 184
               PS+  ++ TS+      A +  +V   P L+      + +    W T+++  +F  
Sbjct: 153 ERLSPSTQNRYRTSIMRALNLAKQAGWVDAIPYLA---KNNEPKKRVRWITQDEANRFLD 209

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----NNIFSIKTQKTGTIITVELPDG 240
             +     R    F L +G R S+        +       I +    K+G   ++ LP  
Sbjct: 210 SLNL-EWMREVCSFALLTGGRMSEILTLTWDKIDFPRSIAIVTSDVAKSGHARSLPLPRN 268

Query: 241 FMKLLAMTPIGKETFFINNDKQ-KMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISA 298
            +  L      + + ++ +  + KM +      FK    +AG+ + S H +R   A+   
Sbjct: 269 AVNFLRQKETRRISQYVFHRGKGKMISDIDREDFKRALQRAGISDFSFHDLRHTWASWHI 328

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
            +G     L    GW+T++  + Y    +R  L   N  +++S + 
Sbjct: 329 QSGTPLMVLKELGGWETIEMVQKYAHLNERHLLQYANHVKVTSKLT 374


>gi|51597440|ref|YP_071631.1| phage integrase/recombinase [Yersinia pseudotuberculosis IP 32953]
 gi|51590722|emb|CAH22367.1| Possible phage integrase/recombinase [Yersinia pseudotuberculosis
           IP 32953]
          Length = 327

 Score = 95.5 bits (236), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 48/307 (15%), Positives = 96/307 (31%), Gaps = 24/307 (7%)

Query: 26  RKGHGRRIRLPYPHESTFIP-AYMSALTGSTPKREYINSP--RKKPTTLKWLISEYRKSA 82
           R       R+           A+   +  +  ++E+++ P  ++  + L  L   Y    
Sbjct: 16  RPAGRNGKRIRRTFSKKHEAVAFEKYVVVNYHEKEWLSKPTDKRSLSELSTLWWSY--HG 73

Query: 83  HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRV 142
                    ++       +I+     F   K      R+   +     SS  + L  +  
Sbjct: 74  QNMDYGQKYKVQLAKVI-RIMSDLCAFQIDKNVIARYRAIRLAGGVKASSVNRDLAVLSG 132

Query: 143 LFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201
           +F   +    Y + +P   + + K K       ++ ++++  +    G   R+A    L 
Sbjct: 133 MFTALINAGVYHSEHPLAGISKLKPKQTARAFLSQSEIKKLLNCLD-GDNRRVAI-LCLS 190

Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG----KETFFI 257
           +G R  ++ +   +H+ +N  +    K G   TV +       L     G       + I
Sbjct: 191 TGARWGEAIKLRTEHIIDNRITFVATKNGKQRTVPISSDVFNDLTAMKSGLLFNDAAYLI 250

Query: 258 NNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVD 317
              K K   T                ++ H +R   AT     G     L    G  T+ 
Sbjct: 251 FRQKLKSVKTDLPQ-----------GQATHVLRHTFATHFMINGGNIITLQRILGHSTIQ 299

Query: 318 QAETYTK 324
           Q   Y  
Sbjct: 300 QTMLYAH 306


>gi|288801874|ref|ZP_06407316.1| integrase [Prevotella melaninogenica D18]
 gi|288335916|gb|EFC74349.1| integrase [Prevotella melaninogenica D18]
          Length = 328

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 51/291 (17%), Positives = 110/291 (37%), Gaps = 30/291 (10%)

Query: 75  ISEYRKSAHWGSLAVNS----RISFES--YFDQIIRKSGDFDYRKITTKHIRS----GVE 124
           + EY++     +L+  +    + S++S  +F Q+  ++ D    ++    +       + 
Sbjct: 17  VCEYKEELQGRTLSKATVRAFKDSYKSFVHFLQVRDRA-DCMPTEVDKTLLEDYRLFMLR 75

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
              +  SS    L  +  + + A+++ YV  +P   ++  +  T      T +D+Q+  +
Sbjct: 76  DLGNKESSVGNRLRHLHQVIRKALQERYVREDPFELID-IETPTYERNALTADDLQKLLA 134

Query: 185 FWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHL-----QNNIFSIKTQKTGTIITVE 236
           +    S     RL F    ++GL  SD  +  +  +          S+   KT     V 
Sbjct: 135 YRPHRSTDNHCRLIFLLGCFTGLAFSDLKKLRMDDVYTFGDGRRYISLCRTKTQNRSIVP 194

Query: 237 LPDGFMKLLAMTPIG-KETFFINNDKQKMNATQFSIWFKAKATKAGV----NKSAHGVRK 291
           L     K+LA+   G +E  F        + + F+   +    KAG+      ++H  R 
Sbjct: 195 LLPVAEKILAIVSHGRREGLFFREF---PSNSNFNRTIQEICIKAGLLPHTQATSHTARH 251

Query: 292 FSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
             AT    + G     +    G + +   E Y +   + ++  +    + S
Sbjct: 252 TFATTICLENGLPIETVSKMLGHRFISTTEIYAR-VTKSKIAKEMQPLMGS 301


>gi|163745902|ref|ZP_02153261.1| Phage integrase [Oceanibulbus indolifex HEL-45]
 gi|161380647|gb|EDQ05057.1| Phage integrase [Oceanibulbus indolifex HEL-45]
          Length = 497

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 46/272 (16%), Positives = 94/272 (34%), Gaps = 28/272 (10%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS--AIQFLTSMRV 142
           GSL   +      +  Q +   GD     +   H  +  E+     ++      ++ +RV
Sbjct: 211 GSLKRKTAKQRIRHLKQFVEMIGDHALEDLEPIHAYAYAEALAEELANKTINARISDVRV 270

Query: 143 LFKWAVRQEYVAINPCLSV--ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200
               AV++  + +NP L++  +     T+   P + E ++          + R  +  L 
Sbjct: 271 ALHLAVKKGLLKVNPFLNLSLKHYGTGTKNYDPLSDEQIEALVGQPKLPDRIRTIWLILA 330

Query: 201 YSGLRCSDSCRAGVQHLQ--NNIFSI-----KTQKTGTIITVELPDGFMKLLAMT---PI 250
            +G+R  +        ++  + I+       + +   ++  V + D    L+        
Sbjct: 331 CTGMRVDEVATLRCDQVKHLDGIWYFDLRHAQVKNKSSMRRVPICDALFPLVHQLLKDRK 390

Query: 251 GKETFF---INNDKQKMNATQFSIWFKAKATKAGVNKS--------AHGVRKFSATISAD 299
           G+E  F   +N D +   +TQ + WFK    +   N S         H +R        D
Sbjct: 391 GQERLFDYELNADGKTRASTQMNYWFKKAGVE---NLSEISNGHFVTHSLRGTFKDKLRD 447

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           A        + +G       + Y  G    +L
Sbjct: 448 ADVLTEINKSIHGHGLGGMEDIYGHGFSLRKL 479


>gi|262381530|ref|ZP_06074668.1| transposase [Bacteroides sp. 2_1_33B]
 gi|262296707|gb|EEY84637.1| transposase [Bacteroides sp. 2_1_33B]
          Length = 403

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 54/287 (18%), Positives = 98/287 (34%), Gaps = 37/287 (12%)

Query: 88  AVNSRISFESY-------FDQIIRKS--GDFDYRKITTKHIRSG----VESRKHTPSSAI 134
              ++ ++  Y        + I  K    D  +R+I    I        E+   T ++A+
Sbjct: 126 KTATQKTYTRYELTKNRLAEYIHDKYNVEDITFREINVVFIEGFYLFIRENYPCTHNTAM 185

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQ 191
           +F+   R +  +A     +  NP     + K +        + ++ +            Q
Sbjct: 186 KFIQRFRTVVLFAHNLGLITFNP-FGAYKLKFEYVERDFLEQAELDRIYQKTFASKRLEQ 244

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQ-----NNIFSIKTQKTGTIITVELPDG----FM 242
            R  F F  Y+GL   D C    ++++     N     K  KT     + L D       
Sbjct: 245 VRDIFIFSCYTGLSYVDVCELTPENIKLSFDGNLWIIKKRHKTSVTSNIRLLDIPKSILQ 304

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
           K     P GK    I+N K        + + K  AT  G+NK  + H  R   AT+S   
Sbjct: 305 KYDGKLPNGKLLPVISNQK-------MNDYLKEIATVCGINKRITFHVARHSFATLSISY 357

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
           G     +    G   +   + Y K  D      ++    ++ +++  
Sbjct: 358 GVPIESVSKMLGHTNIRTTQIYAKIIDTKL--SEDMDIFANKLNNRK 402


>gi|47097559|ref|ZP_00235093.1| site-specific recombinase, phage integrase family, putative
           [Listeria monocytogenes str. 1/2a F6854]
 gi|254900896|ref|ZP_05260820.1| DNA integration/recombination/invertion protein [Listeria
           monocytogenes J0161]
 gi|47014070|gb|EAL05069.1| site-specific recombinase, phage integrase family, putative
           [Listeria monocytogenes str. 1/2a F6854]
          Length = 387

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 42/296 (14%), Positives = 84/296 (28%), Gaps = 47/296 (15%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE---SR 126
               + ++R +     L  N+   +  + +  II         KITT  +         +
Sbjct: 65  FIDFVEKWRLNYAKRELKGNTIDKYNLFLENWIIPYFERKKISKITTMQLLDYFHEVQKK 124

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
              PS+       +R LFK+A        +  LSV++P  K      + + +++      
Sbjct: 125 GVGPSALEGHHRVIRSLFKYATLWGITETDVSLSVKKPTYKVPEKNIYNRREIEVLIDRI 184

Query: 187 SEGSQ-PRLAFEFLLYSGLRCSDSCRAGVQHLQ----------------NNIFSIKTQKT 229
               +  ++  +  LY GLR  +      + +                 +    +   K 
Sbjct: 185 KILQKYQQVMIKLALYCGLRRGEVIGLTTKDMNYNKNTINVYRAVIKSASEGIKLDETKN 244

Query: 230 GTIITVELPDGFMKLLAMTPIGKE----------------------TFFINNDKQKMNAT 267
                V  P G M+ +      K+                        F ++D       
Sbjct: 245 KRKRIVPAPAGLMQEIKELAKEKQKNKDKLGLLWKGTKDLDGKTVVLIFSHDDGTPFTPA 304

Query: 268 QFSIWFKAKATKAG----VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
             +  F     K         S H +R  +A+   + G     +    G   +   
Sbjct: 305 SVTRMFNRFLEKEENNDLTKISFHDLRHSAASFLLEQGINVKVIQNILGHSDIKVT 360


>gi|302189251|ref|ZP_07265924.1| phage integrase, putative [Pseudomonas syringae pv. syringae 642]
          Length = 335

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 33/284 (11%), Positives = 88/284 (30%), Gaps = 29/284 (10%)

Query: 11  VTKERTRHGKIIY---YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK 67
           V ++R R    ++   Y+R  +G+ + L    +   +    + L       +        
Sbjct: 2   VRRKRPRKNGTVWVGYYYRDANGKELPLGGDLDKARLK--WAELEAKAKPDDLKI----- 54

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127
              +K +   Y +       A  ++   ++    + +         IT   +    ++R 
Sbjct: 55  ---MKGIFDRYERDII-PKKAARTQKDNKAELKHLRKGFESAPIDAITPSMVAQYRDART 110

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAI-NPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
              + A + +  +  ++  A    +    NPC  V + K K                   
Sbjct: 111 AK-TRANREIALLSHVYNMAREWGFTDRENPCAGVRKNKEKVRDYYA-NDMVWAAVYGQA 168

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL-----PDGF 241
            +  +   A +    +G R +D        ++ +  +++  KTG  + +++     P+  
Sbjct: 169 PQELKD--AMDLAYLTGQRPADVIAMNRGDIEGDYLNVQQGKTGKRLRIQMQNSGVPNSL 226

Query: 242 -----MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280
                  +L         F ++    +++       +      A
Sbjct: 227 GLLIGAIMLRNAKHASHHFILSRTGMRVSQQMLRNRWDEAREAA 270


>gi|218554145|ref|YP_002387058.1| putative defective integrase; Qin prophage [Escherichia coli IAI1]
 gi|218360913|emb|CAQ98485.1| putative defective integrase; Qin prophage [Escherichia coli IAI1]
          Length = 431

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 45/317 (14%), Positives = 97/317 (30%), Gaps = 64/317 (20%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK-ITTKHIRSGVESR-- 126
           T+K L  ++        +A  S  ++ +    I+   G+ +    I  + +    +    
Sbjct: 85  TIKELAEKFLALKE-TEVAKTSLNTYRAVIKNILSIIGEKNLASSINKEKLLEVRKELLT 143

Query: 127 --------------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
                           +  +   ++T++  +F++ V   Y+A NP   +   K       
Sbjct: 144 GYQIPKSNYIVTQPGRSAVTVNNYMTNLNAVFQFGVDNGYLADNPFKGISPLKESRTIPE 203

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK----- 225
           P ++E+  +         Q +  +   +Y+G+R  + C  G + +   N    I+     
Sbjct: 204 PLSREEFIRLIDAC-RNQQAKNLWCVSVYTGVRPGELCALGWEDIDLKNGTMMIRRNLAK 262

Query: 226 --------TQKTGTIITV--ELPDGFMKLLAMTPIGKETFF------------------- 256
                      T  +I +     D     + +T + KE                      
Sbjct: 263 DRFTVPKTQAGTNRVIHLIKPAIDALRSQMTLTRLSKEHIIDVHLREYGRTEKQKCTFVF 322

Query: 257 -------INNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELM 308
                  + N             + A   +AG+ ++ ++  R   A  S  AGA    + 
Sbjct: 323 QPEVSARVKNYGDHFTVDSIRQMWDAAIKRAGLRHRKSYQSRHTYACWSLTAGANPAFIA 382

Query: 309 ATYGWKTVDQA-ETYTK 324
              G        + Y K
Sbjct: 383 NQMGHADAQMVFQVYGK 399


>gi|42525368|gb|AAS18383.1| Int1 DNA integrase [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 372

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 42/306 (13%), Positives = 93/306 (30%), Gaps = 62/306 (20%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129
           ++ + R+   +   ++ +  ++  +    IR  G      + +  + + +      RK +
Sbjct: 16  VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75

Query: 130 PSSAIQFLTSMRVLFK--WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            S+  Q L ++   +         ++       + RP+         T +++ +   F  
Sbjct: 76  VSTHRQALAALLFFYGKVLCTDLPWLQ-----EIGRPRPSRRLPVVLTPDEVVRILGFL- 129

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
           EG   RL  + L  +G+R S+  +  V+     +    ++  K      + LP+     L
Sbjct: 130 EGEH-RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSL 188

Query: 246 AMTPIGKETFFINN---------------------------------------------D 260
                    +++ +                                              
Sbjct: 189 REQLSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVR 248

Query: 261 KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           +  M    F   FK    +AG+ K  + H +R   AT    +G     +    G   V  
Sbjct: 249 RHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVST 308

Query: 319 AETYTK 324
              YT 
Sbjct: 309 TMIYTH 314


>gi|225572883|ref|ZP_03781638.1| hypothetical protein RUMHYD_01074 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039748|gb|EEG49994.1| hypothetical protein RUMHYD_01074 [Blautia hydrogenotrophica DSM
           10507]
          Length = 397

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 62/378 (16%), Positives = 107/378 (28%), Gaps = 61/378 (16%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
            ++ K     G   Y +          P P      P+            E       K 
Sbjct: 24  KYLYKYVDAFGNTKYVYAWRLTP--TDPTPKGKREKPSLRELEQQIRRDIEDGIDSTGKK 81

Query: 69  TTLKWLISEY-RKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRSGVESR 126
            T   L   Y +++A   ++  +++   E     +   K G      I     +      
Sbjct: 82  MT---LCQLYAKQNAQRANVKKSTQKQREQLMRLLKEDKLGARSIDTIKPSDAKEWALRM 138

Query: 127 KHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPC--LSVERPKRKTEGIRPWTKEDMQQ 181
           K      ++      S++  F  A++ +YV  NP      E  +  T+     T+E  Q 
Sbjct: 139 KDKGFSYNTINNHKRSLKASFYIAIQDDYVRKNPFDFKLSEVLENDTKEKVALTEEQEQA 198

Query: 182 FKSFWSEGSQPRLAFE---FLLYSGLRCSDSCRAGVQHLQ------------------NN 220
             SF    +     F+    LL +GLR S+ C   +  +                     
Sbjct: 199 LLSFIKTDNVYHKYFDDVLILLKTGLRISELCGLTIMDVDFNHEVVIIDHQLLKSKEQGY 258

Query: 221 IFSIKTQKTGTIITVELPDG----FMKLLAMTPIG--------KETFFINNDKQKMNATQ 268
                  K+GT   V L +     F +L+   P              F+N   +   A  
Sbjct: 259 YIETPKTKSGTR-QVPLSEETIKAFQRLMKKRPKAEPFVIDGRGNFLFVNQKGKPKVAID 317

Query: 269 FSIWFKAKATKAGVNK--------SAHGVRKFSATISADAGATAHELMATYGWKTVD--- 317
           ++  F     K   +         + H +R    T  A       +L    G   +    
Sbjct: 318 YNALFVRMVKKYNKHHKDNPLPHITPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISITM 377

Query: 318 ----QAETYTKGADRIRL 331
                A   T  ++  RL
Sbjct: 378 NWYAHASIDTAKSEVQRL 395


>gi|311107246|ref|YP_003980099.1| integrase [Achromobacter xylosoxidans A8]
 gi|310761935|gb|ADP17384.1| phage integrase family protein 5 [Achromobacter xylosoxidans A8]
          Length = 248

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 84/228 (36%), Gaps = 19/228 (8%)

Query: 108 DFDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWA-VRQEYVAINPCLSVERP 164
           D    K+T +HI +  + R  T  PSS ++ L+ +  +F+ A +  E+V +NP   + +P
Sbjct: 14  DLAMSKVTAQHIGAFRDDRAKTIGPSSVLRELSLLASVFESARLEWEWVELNPVRGIRKP 73

Query: 165 KRKTEGIRPWTKEDMQQ------FKSFWSEGSQPRL---AFEFLLYSGLRCSDSCRAGVQ 215
            +     R  +  ++++      ++     GS            L +G+R  + C     
Sbjct: 74  AKGKHRDRIISMPEVRRMLREMGYQRSGRIGSTAEAVANCMMLALRTGMRAGELCGLTWA 133

Query: 216 HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKA 275
           ++ +    +   K+     V L      +L       ET                  F+ 
Sbjct: 134 NVHDLHAHLPDTKSDRPRDVPLSTRARAILRRMKGWDETLVFGIR-----PASLDALFRK 188

Query: 276 KATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
              +A ++  + H  R  +AT+ A       +L   +GW     A  Y
Sbjct: 189 YRERAELSGFTFHDTRHTAATMIAKK-IDVLDLCKMFGWTDPKMAMVY 235


>gi|302866903|ref|YP_003835540.1| tyrosine recombinase XerD [Micromonospora aurantiaca ATCC 27029]
 gi|302569762|gb|ADL45964.1| tyrosine recombinase XerD [Micromonospora aurantiaca ATCC 27029]
          Length = 323

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 87/278 (31%), Gaps = 39/278 (14%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTK-------HIRSGVESRKHTP----SSA 133
             L+ N+  S+    D+ +          +          H+          P    SSA
Sbjct: 27  RGLSANTLASYRRDLDRYLATLAAAGVDDLAAAGPAQVEAHLARLRAGDDDHPPLAVSSA 86

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW------- 186
            +  +++R L ++A+R+     +P   V  P       R    + + +            
Sbjct: 87  ARAASAVRGLHRFALREGLAGADPSRDVRPPAPPRRLPRALPVDAVLRLLEAAGTPGATG 146

Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVEL----P 238
              +   + R   EFL  +G R S++  A V  L  +  ++    K G    V +     
Sbjct: 147 DAAARALRDRALLEFLYGTGARISEAVGAAVDDLDLDAGTVLLRGKGGRTRLVPVGGYAA 206

Query: 239 DGFMKLL-------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK------S 285
           D     L            G    F+N     +         +  A +AG+        S
Sbjct: 207 DALRAWLVRGRPALLAAGRGTHAVFVNARGGPLTRQGAWAVLRTAAARAGLPVDGPDAVS 266

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
            H +R   AT   D GA    +    G  +V   + YT
Sbjct: 267 PHTLRHSYATHLLDGGADVRVVQELLGHASVTTTQVYT 304


>gi|168703458|ref|ZP_02735735.1| Phage integrase [Gemmata obscuriglobus UQM 2246]
          Length = 363

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 52/293 (17%), Positives = 90/293 (30%), Gaps = 22/293 (7%)

Query: 52  TGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFD 110
            G   K E +  P     TLK  +  + KS     L   ++   ++  D   +   G   
Sbjct: 52  AGLVKKLEEVAPPSSG-ITLKAWLERWLKSLEGTELRQRTKDVRKTATDLYFVPTLGHIR 110

Query: 111 YRKITTKHIRSGVESRKHTPSSAIQF---LTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167
              +T   I   V+    T  SA      L ++      A  +  +  NP L V+RP + 
Sbjct: 111 LTDLTHLQITEAVKKWTATLKSASTRRTYLAALSTALNAAKYEGLITDNPILKVKRPPQP 170

Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK 225
                P+T  D+ +  +   +             +G R  ++    V          +I 
Sbjct: 171 KAVFDPFTVADLNRIIADAVQRPATYPC-ALYAATGCRMGEALALDVTSFDPAAGTIAIT 229

Query: 226 T----------QKTGTIIT-VELPDGFMKLL--AMTPIGKETFFINNDKQKMNATQFSIW 272
                       KT   I  +E+P      L  A+        F     ++ + +     
Sbjct: 230 QTQDARRERGPAKTSNSIRVIEVPADARPALVSAIGTRTDGPLFTTPAGRRQSKSNVRKA 289

Query: 273 FKAKATKAGVNKSA-HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +     + G+   A H  R   AT    AG    ++ A  G         Y +
Sbjct: 290 WIRLLNRLGLKYRAPHKCRHTVATRMLAAGYGIPDVAAYLGDTAETVLRIYAR 342


>gi|145708124|ref|YP_001165299.1| site-specific recombinase [Ralstonia phage phiRSA1]
 gi|139003913|dbj|BAF52427.1| site-specific recombinase [Ralstonia phage phiRSA1]
          Length = 360

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 50/335 (14%), Positives = 105/335 (31%), Gaps = 31/335 (9%)

Query: 16  TRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR---KKPTTLK 72
            R     +Y+ K +    R P    +       +       K +  N  +   +   T  
Sbjct: 5   KRKDSNNWYY-KLYAPGNRTPVQGSTGTSDRERAQEYHDRLKVDLWNQAKLGHQPRYTWN 63

Query: 73  WLISEYRKSAHWGSLAVNSR---ISFESYFDQIIRKSGDFDYRKITTK---------HIR 120
             +  Y +          +R      + + D ++    D D      +           R
Sbjct: 64  DAVVRYVEDRAELRSLETTRTHLRWLDKHLDGVVLADIDRDRVDALARLKRAEHRIVRTR 123

Query: 121 SGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
            G++    T  PS+  + +  +  +   AV   ++   P    +R K   + IR  +  +
Sbjct: 124 EGIKQLPGTVSPSTVRRVIGVLTAVLNAAVEWGWLTSAPKR--KRVKTAGKRIRWLSPAE 181

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN----NIFSIKTQKTGTIIT 234
            ++  +   +       F   L +GLR ++        +              K    IT
Sbjct: 182 AERLLAELPDHLAEMARF--SLETGLRRANVTGLQWSQVDLVRRVAWIHADQAKAHKAIT 239

Query: 235 VELPDGFMKLLA---MTPIGKETF-FINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGV 289
           V L D  +++L      P   +   ++   +        +  +K    +AG+ +   H +
Sbjct: 240 VPLSDTAVEVLRRQLAKPRKPQYVSWVFVYRGCSIYKTTTAAWKKAQKRAGIRDFRWHDL 299

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           R   A+     G     L    GW+T++  + Y  
Sbjct: 300 RHTWASWHVQRGTPLQVLKELGGWETMEMVQRYAH 334


>gi|258538870|ref|YP_003173369.1| phage-related integrase [Lactobacillus rhamnosus Lc 705]
 gi|257150546|emb|CAR89518.1| Phage-related integrase [Lactobacillus rhamnosus Lc 705]
          Length = 383

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 63/341 (18%), Positives = 117/341 (34%), Gaps = 49/341 (14%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGS--TPKREYINSPRKKPTTLKWLISEYRKSAHWG 85
           G  RRI         F     +AL  S  T   +  +    +  T K +  E+  +    
Sbjct: 29  GKKRRIHKRG-----FRDKKEAALAASRFTLDADAGSLSTNRSMTFKAVYLEWDAAYKNT 83

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-KHTPSSAIQFLTSMRVLF 144
                   ++      ++   G+    KITT  ++  V    K    +  ++LT+   + 
Sbjct: 84  VRESTYERTYIQIKKHVLPLFGNKPINKITTAQLQQAVNQWSKQVTRNYRRWLTTASRIL 143

Query: 145 KWAVRQEYVAINPCLSVERPKRKTE----GIRPWTKEDMQQFKSFWSEGSQPR--LAFEF 198
           ++A+R+ Y+  NP   V  PK K +        W K+++ +F S+     +P+    F  
Sbjct: 144 RFALRRGYINKNPADLVIIPKEKEQIGDVAANFWDKQELTRFFSYIDAKQEPQKTALFRI 203

Query: 199 LLYSGLRCSDSCRAGVQHL----------------QNNIFSIKTQKT-GTIITVEL---- 237
           L + GLR  +      + +                 N    ++  KT  +  T+ +    
Sbjct: 204 LAFGGLRRGECLALTWKDISFTDSTITVNKTLSQGMNGRQLVQPPKTRKSRRTITMDSKT 263

Query: 238 --------PDGFMKLLAMTPIG---KETFFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284
                        K +A+        +  F N+  + +   + + W K+      +    
Sbjct: 264 MSALKHWRLVQLQKYMALGFNANKPDQLVFSNSKNKHLLLHKPADWLKSIEDTHKIEHRI 323

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
           + HG R   A+    AGAT  E+    G   V      YT 
Sbjct: 324 TIHGFRHSHASALFSAGATVKEVQERLGHSDVKTTLNIYTH 364


>gi|157362896|ref|YP_001469663.1| phage integrase family protein [Thermotoga lettingae TMO]
 gi|157313500|gb|ABV32599.1| phage integrase family protein [Thermotoga lettingae TMO]
          Length = 276

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 38/262 (14%), Positives = 87/262 (33%), Gaps = 16/262 (6%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132
            L+  +        L+  +  ++ S   +  +   + +  +I      +   +    PS+
Sbjct: 6   DLLKRFEAVLRSQKLSSMTVRAYMSAVRKFTQSIEELNVEEILKW---AETTAEGRKPST 62

Query: 133 AIQFLTSMRVLFKWAVRQEYVA-INPCLSVERPKRKTEGIRPWTKED----MQQFKSFWS 187
              +  ++R   +    +  +   N    ++   R +   +  ++ +      +    + 
Sbjct: 63  VNLYYCAIRRFLEEVSPEILLDLRN---KLKVKGRSSTIPKALSEREFLKLWNKAVKIFD 119

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-ELPDGFMKLL- 245
           E  +  L      Y+GLR S+     V H+      I     G  + +  +P      + 
Sbjct: 120 EDYRQLLIVGLAGYAGLRVSEIRSLKVGHINLREDHILVNGKGRKMRIVPIPSKLKPYIF 179

Query: 246 AMTPI--GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGA 302
            + P    +E    N   + + +   S   K  A K G+   S H +R  +AT     G 
Sbjct: 180 KIVPKLKEEEPLLKNLSGKPITSHGISYLLKNLAKKTGIKHISPHVLRHTAATNLLKKGV 239

Query: 303 TAHELMATYGWKTVDQAETYTK 324
               +    G  ++   E Y +
Sbjct: 240 NLKIVQEFLGHSSLATTERYLR 261


>gi|78776442|ref|YP_392757.1| Phage integrase [Sulfurimonas denitrificans DSM 1251]
 gi|78496982|gb|ABB43522.1| Phage integrase [Sulfurimonas denitrificans DSM 1251]
          Length = 377

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 66/369 (17%), Positives = 123/369 (33%), Gaps = 46/369 (12%)

Query: 10  FVTKERTRHGKIIYYFRKGHG----RRIRLPYPHESTFIPAY--------MSALTGSTPK 57
            V       G   YY R        +R+++    + T    Y        ++A       
Sbjct: 12  GVQYYIKADGTKSYYVRYKDEENRLKRVKIGDETDGT-TEVYCKNKRIEILNAQNKGEQP 70

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK 117
            + + + RKK  TL  +  +Y  +      + ++      Y   I    G      IT  
Sbjct: 71  PKIVKNHRKKVLTLNEVADKYFTT---KDSSRSTFDRISKYKKHIAPVLGHRGVTGITKN 127

Query: 118 HIRSGVES----RKHTPSSAIQFLTSMRVLFKWAVRQEYVA-INPCLSVERPKRKTEGIR 172
            + S  +S    +  +P +A   +     +F +  ++E    +NP L V++ K +    R
Sbjct: 128 DLISIQDSIIKEQNLSPQTANMVIELFGTIFIYGFKEEMYEAVNPTLKVQKFKVRNTRER 187

Query: 173 PWTKEDMQ-------QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFS 223
              K +++       Q+    + G    L  +  L +G R           +   N+I  
Sbjct: 188 FLNKLEIEELFDAAKQYDEKNANGGVLELFTKLALTTGARMESVLNIKKCDIDLQNDIIR 247

Query: 224 IKTQKTGTIITV-ELPDGFMKLL-AMTPIGKET-FFI--NNDKQKMNATQFSIWFKAKAT 278
           +   K G  +    + D   +LL   +   K T + I  NN+ +K+ A Q     K    
Sbjct: 248 LVDLKNGGEVYSGYITDTTRELLYQKSKAIKFTDYLISFNNNGKKIGARQLQTRLKPLLD 307

Query: 279 KA---GVNKS-------AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GAD 327
                G++          H +R   A+  A A     ++        + Q   Y K   D
Sbjct: 308 DLFNQGLDVKDRKNRIVIHSLRHTCASQLAMANVPILQIQELLNHADISQTVRYAKLQGD 367

Query: 328 RIRLGIKNS 336
             +  I+  
Sbjct: 368 ANKKAIQGV 376


>gi|262195487|ref|YP_003266696.1| integrase family protein [Haliangium ochraceum DSM 14365]
 gi|262078834|gb|ACY14803.1| integrase family protein [Haliangium ochraceum DSM 14365]
          Length = 395

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 46/331 (13%), Positives = 92/331 (27%), Gaps = 81/331 (24%)

Query: 72  KWL--ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD--------YRKITTKHIRS 121
           +WL    +Y ++      + ++R ++     +  R   +             +  +   +
Sbjct: 15  RWLARFDDYLRTER--GGSAHTRAAYGRDLAEFGRVYEERSGAPPVPAQVAVLDIRAHLA 72

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
           G+  R    + A + L+++R  F + V++  +  NP   V  PKR+    R    +D  +
Sbjct: 73  GLYERNDAATMARK-LSALRSFFAFLVQRGALDNNPARGVRSPKRRKALPRALDVDDAFR 131

Query: 182 FKS-------------------------------------------------FWSEGSQP 192
                                                                     + 
Sbjct: 132 LIEAPTRAPASGADAAAASPARNVGRSGGRSANRAGATGTASAGKNKRAKTSREPLKLRD 191

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-----SIKTQKTGTIITVELPDGFMKLLAM 247
           R   E L  SGLR  + C   +  +           ++  K G    V L    +  L  
Sbjct: 192 RAIAEVLYGSGLRVGECCALDLDDIDRARLSSALVRVRRGKGGKERIVPLGRQAVAALDA 251

Query: 248 -------------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFS 293
                                F++    ++            A + G    + H +R   
Sbjct: 252 YLNVRPLLRDPKTGARDPAALFLSYRGTRLTTRSVQRMIGRNAQEVGAYEATPHALRHSF 311

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324
           AT   D+G     +    G  ++   + YTK
Sbjct: 312 ATHLLDSGVDLRAIQELLGHASLASTQIYTK 342


>gi|255015356|ref|ZP_05287482.1| putative bacteriophage integrase [Bacteroides sp. 2_1_7]
          Length = 389

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 44/213 (20%), Positives = 76/213 (35%), Gaps = 18/213 (8%)

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVE---RPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
                   + + A++ + +AINP   ++   +PK +       T E++++  +   E   
Sbjct: 176 NLYKKFAWVIRKAMQADIMAINPLDKIDNTDKPKPEDGQREFLTIEEIKRLMNTPCEDDM 235

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVELPDGFMKLLA 246
            + AF F    GLR SD  +     L  +     I  I+  KT       +    +K L 
Sbjct: 236 LKCAFIFCCLVGLRYSDVKKLVWNDLYEDNEGAIILRIRVTKTKRCEDFPISKEALKWLP 295

Query: 247 -MTPIGKETFFINNDKQKMNATQFSIW-FKAKATKAGVNK--SAHGVRKFSATISADAGA 302
                G E  F      K+     S    K   T AG+ K  + H  R  +AT++   G 
Sbjct: 296 ERIGSGDEKIF------KLPKNDNSNRKLKHWCTLAGITKNVTFHVARHTAATLNLSLGV 349

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335
               +    G   +   + Y K  D  +    +
Sbjct: 350 PIETVSKLLGHTKISTTQIYAKVIDANKKAAVH 382


>gi|254501567|ref|ZP_05113718.1| site-specific recombinase, phage integrase family protein
           [Labrenzia alexandrii DFL-11]
 gi|222437638|gb|EEE44317.1| site-specific recombinase, phage integrase family protein
           [Labrenzia alexandrii DFL-11]
          Length = 397

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 51/277 (18%), Positives = 89/277 (32%), Gaps = 24/277 (8%)

Query: 90  NSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKHTPS--SAIQFLTSMRVLFKW 146
            S        D  +I   G+     +T   I S V+      +  +A + L ++R    W
Sbjct: 122 RSARETTRLLDHDVIPVIGNKSIHDVTKHDIISIVDRVSGRGAHTTANRTLAAVRKFLNW 181

Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK-SFWSEGSQPRLAFEFLLYSGLR 205
            V +  +  +P  +V  PK++    R     ++     +    G       + L  +  R
Sbjct: 182 CVGRGVIETSPAANVAAPKKEVSRDRALDTAELAAILNATDKMGFPFGYYVKLLFLTAQR 241

Query: 206 CSDSCRAGVQHLQNNIFSIK----TQKTGTIITVELPDGFMKLLAMTP-------IGKET 254
             +        +  +  +        K G    V L    + +L   P          + 
Sbjct: 242 RGEVSGMRWSEINLDSATWTIPAERAKNGKAHVVHLSQASLDVLQSIPKFANANGTESDL 301

Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGW 313
            F  N K   + + FS   K     +GV +   H +R+   T  A  G   H   A    
Sbjct: 302 VFTTNGKT--SISGFSKAKKQLDELSGVTDWRIHDIRRTVVTQMAAMGVWHHVADAILNH 359

Query: 314 KTVDQ---AETYTKGA---DRIRLGIKNSRRISSVVD 344
           KT      A  Y +     DR R     ++R+  + D
Sbjct: 360 KTGAISGVAAVYQRHEFLDDRKRALDDWAKRLREISD 396


>gi|172040496|ref|YP_001800210.1| integrase/recombinase [Corynebacterium urealyticum DSM 7109]
 gi|171851800|emb|CAQ04776.1| integrase/recombinase [Corynebacterium urealyticum DSM 7109]
          Length = 352

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 44/311 (14%), Positives = 93/311 (29%), Gaps = 53/311 (17%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132
           L+ +Y     +    + N+  +++      +   G  D    T  H R  +       +S
Sbjct: 35  LLEDYVDYLRYNLGRSENTIRAYQRDLTDSLE--GLRDIESFTLDHARDVLGYAADDGAS 92

Query: 133 AIQFL---TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----- 184
             +     +SM+   K+  ++E +  NP  ++  PK +    R    +  +         
Sbjct: 93  RSRLSRLASSMKGFGKFLAQREVLPANPVSALRLPKGEKTLPRVLRSDQARTLLDGLKRD 152

Query: 185 --------------------------FWSEGSQPRLAF--EFLLYSGLRCSDSCRAGVQH 216
                                       +   + R  F  E L  +G+R  ++    V+ 
Sbjct: 153 ALEPPAPHEGSEDAPATAQPTGNKNQRHATARRVRDWFIAELLFGTGIRVGEAEAIDVED 212

Query: 217 LQNNIFSIKTQKTGTIITV---------ELPDGFMKLLAMTPIGKETFFINNDKQKMN-- 265
                + ++    G    V          L         +         +     ++N  
Sbjct: 213 FDRANWLLRVTGKGNKTRVVPYGGVIDEALTHWLSHRGELAQPANPALLVGVRGGRLNQR 272

Query: 266 --ATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
                     +     A  + S HG R  +AT   + GA    +    G  +++  + YT
Sbjct: 273 EIRRVIDQAIRRHPELAVGHMSPHGFRHSAATAVLEGGADLRVVQELLGHASMNTTQIYT 332

Query: 324 K-GADRIRLGI 333
             GA+R++   
Sbjct: 333 HVGAERLKAAY 343


>gi|160936910|ref|ZP_02084274.1| hypothetical protein CLOBOL_01799 [Clostridium bolteae ATCC
           BAA-613]
 gi|158440100|gb|EDP17847.1| hypothetical protein CLOBOL_01799 [Clostridium bolteae ATCC
           BAA-613]
          Length = 290

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 46/265 (17%), Positives = 89/265 (33%), Gaps = 23/265 (8%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
             +I +Y    H   ++  +   +  Y +   + +      K      +  +  +  +P 
Sbjct: 8   DNMIKDYCGEMHQNEMSSGTIKKYFYYLNLFRKYADGKPVSKELVIVWKDTLREQ-FSPV 66

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI----RPWTKEDMQQFKSFWS 187
           +A   L ++   FKW     +       +V   K K        R  ++E+  +  +   
Sbjct: 67  TANSALAALNGFFKW---FGWED----CTVRLIKVKHRMFCSGQRELSREEYIRLVNVAR 119

Query: 188 EGSQPRLAFEF--LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
                RL+     +  +G+R S+     V  +   +  +     G I TV L +G  +LL
Sbjct: 120 GEGNERLSLLLQTVCSTGIRISELSFITVNAVDKQVAEVDC--KGKIRTVFLTNGLCRLL 177

Query: 246 AMTPIGKE----TFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISA 298
                 +       F+    + M+ +      K  + KAGVN      H +R   A +  
Sbjct: 178 KAYARKRNIISGMIFVTRSGKPMDRSNIWREMKQISHKAGVNPDKVFPHNLRHLFARVYY 237

Query: 299 DAGATAHELMATYGWKTVDQAETYT 323
                   L    G  +V+    YT
Sbjct: 238 SQEKDLVRLADILGHSSVNTTRIYT 262


>gi|41408246|ref|NP_961082.1| hypothetical protein MAP2148 [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41396601|gb|AAS04465.1| hypothetical protein MAP_2148 [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 227

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 35/200 (17%), Positives = 73/200 (36%), Gaps = 15/200 (7%)

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRL 194
           +++   KW V +  ++ +P L ++ PK   + +   T++ +++  +     S    +   
Sbjct: 8   ALKRYAKWLVDEGELSSDPLLGLKPPKGDQKVVNALTEDQLKRLIAACQGKSLMDRRDET 67

Query: 195 AFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVE--------LPDGFMKL 244
               +  +GLR +++    +  +     I +I   K G              +       
Sbjct: 68  IVRLMAETGLRANETLSLQITDVNLDAGIVTIVRGKGGKGRVSPFSVQTATAIDRYLRAR 127

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGAT 303
            A         ++    + +     S   K +AT AG+     H +R  +AT    AG +
Sbjct: 128 RAHRLSNTGALWLGGGGKSLGYYGLSKALKQRATAAGIETFHLHMLRHTAATRWLRAGGS 187

Query: 304 AHELMATYGWKTVDQAETYT 323
              LM+  GWK     + Y 
Sbjct: 188 ESGLMSVAGWKNRSMIDRYV 207


>gi|325479493|gb|EGC82589.1| phage integrase, N-terminal SAM domain protein [Anaerococcus
           prevotii ACS-065-V-Col13]
          Length = 329

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 49/305 (16%), Positives = 100/305 (32%), Gaps = 52/305 (17%)

Query: 74  LISEYRKS-AHWGSLAVNSRISFESYFDQIIR-----------------KSGDFD----- 110
           LI++Y         L+ N+   +    + +IR                 +  D +     
Sbjct: 9   LITDYLNYLKSIRGLSSNTIKEYSYDLNLLIRFMIVRKIYYGNIVKFNKEFNDDEINSII 68

Query: 111 ----YRKITTKHIRSGV----ESRKHTPSSAIQFLTSMRVLFKWAV-RQEYVAINPCLSV 161
               +  +T +   S +      +  T S+  + +++++  +K+     E +  N    +
Sbjct: 69  NPSFFETLTLQDFYSYLSYLDNEKNDTASTRSRKISAIKSFYKYLYSEIEVINSNVSEKL 128

Query: 162 ERPKRKTEGIRPWTKEDMQQF------KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ 215
             PK         T  + ++       +      S+        L +G+R S+     + 
Sbjct: 129 TNPKISQRQPVYLTLTETERLLDTINNEKNDFLRSRDLAIVFTFLTTGMRLSELVSIDIT 188

Query: 216 HLQNNIFSIKTQKTGTIITVELPDG---------FMKLLAMTPIGKETFFINNDKQKMNA 266
            + N+ F+I   K     TV L D           ++   +     +  FI+  K++++ 
Sbjct: 189 DIVNDHFNII-GKGNKERTVYLTDNCLQLIYSYILVRAKYIGDKDIDALFISTRKKRISN 247

Query: 267 TQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETY 322
                       KAG +    S H +R  +AT+    G      L    G   V   + Y
Sbjct: 248 RAVQSTIDKYLKKAGFDTSIYSTHKLRHTAATLMYKYGNVDIRALKDILGHSNVSTTQIY 307

Query: 323 TKGAD 327
           T   D
Sbjct: 308 THLDD 312


>gi|296447748|ref|ZP_06889663.1| tyrosine recombinase XerD [Methylosinus trichosporium OB3b]
 gi|296254725|gb|EFH01837.1| tyrosine recombinase XerD [Methylosinus trichosporium OB3b]
          Length = 314

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 43/274 (15%), Positives = 87/274 (31%), Gaps = 30/274 (10%)

Query: 89  VNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWA 147
              R   E Y   + R  +          +   + ++SR  T +++ + L+++R   K+ 
Sbjct: 29  DAYRRDLEDYVAHLERTGAEPLGVTTDGLRAYLATLQSRGMTAATSARRLSALRQFHKFL 88

Query: 148 VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG--------------SQPR 193
               Y A +P   +E P+R+         +++++      EG              ++  
Sbjct: 89  YVDRYRADDPSTPLEGPRRQHSAPDILAMDEVERLLETAREGLEDESRAAGERLRAARLY 148

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-ELPDGFMKLL------- 245
              E L  +GLR S+         ++       +  G+   +  +       L       
Sbjct: 149 ALLETLYATGLRVSELVSLPASAARSRDSFFTVRGKGSKERLAPMTPRAKAALTVFRALL 208

Query: 246 --AMTPIGKETFFINNDK--QKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISA 298
                 +    F   +D     +    F+   K  A  AG+   + S H +R   A+   
Sbjct: 209 AKHAPGLADSHFLFPSDAAEGHLTRQAFARDLKTAAAAAGLSARDISPHALRHAFASHLL 268

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
             GA    +    G   +   + YT   D     
Sbjct: 269 QNGADLRVVQELLGHADISTTQIYTHVLDERIRA 302


>gi|294085081|ref|YP_003551841.1| putative site-specific integrase/recombinase [Candidatus
           Puniceispirillum marinum IMCC1322]
 gi|292664656|gb|ADE39757.1| probable site-specific integrase/recombinase [Candidatus
           Puniceispirillum marinum IMCC1322]
          Length = 326

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 54/277 (19%), Positives = 99/277 (35%), Gaps = 17/277 (6%)

Query: 57  KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT 116
           K   + S     TTL+ L+  Y K      L  +   +++           +     +T 
Sbjct: 45  KNTSLPSVDVGDTTLRELLQTYAKEVS-SHLKGSEIETYKLNL-YSKHPIAENKLVNLTQ 102

Query: 117 KHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAV-RQEY-VAINPCLSVERPKRKTEGIR 172
           +H     + R  +    +    L   R +FK A+ +  Y +  NP   ++ P       R
Sbjct: 103 RHFEHLRDERLKQVKSGTVHADLMMFRRVFKTAIHKWGYGLPKNPVEYLQLPSPHKSRKR 162

Query: 173 PWTKEDMQQFKSFWSEGSQPRLA--FEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQK 228
                + +   +  S      +A   EF + +G+R S+  +     +   N   S+   K
Sbjct: 163 RLMPSEKEHLLTAASLQRNIYIASIVEFAIETGMRRSEILKLRWCDVDLENGFASLYDTK 222

Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAH 287
            G    V L    +++L   P   E  F       ++AT   + +     KAG+ +   H
Sbjct: 223 NGEDRRVPLTRRCIEVLQTVPHTNEQVF------PISATCLRLAWNRARKKAGITDLRFH 276

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            +R  + +   + G +  E+    G K V Q   YT 
Sbjct: 277 DLRHEAVSRFFEMGMSVPEVALISGHKDVRQLFRYTH 313


>gi|227523354|ref|ZP_03953403.1| bacteriophage integrase [Lactobacillus hilgardii ATCC 8290]
 gi|227089460|gb|EEI24772.1| bacteriophage integrase [Lactobacillus hilgardii ATCC 8290]
          Length = 383

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 51/287 (17%), Positives = 99/287 (34%), Gaps = 44/287 (15%)

Query: 100 DQIIRKSGDFDYRKITTKHIRSGVESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVA-INP 157
           + I+ + G+   R IT   ++  V    K    +  ++      +F +A++  Y+   NP
Sbjct: 98  NHILPELGNKRIRTITIAQVQRAVNKWFKQATYNYKRWYEYTMAIFDYALKHGYMHGDNP 157

Query: 158 CLSVERPKRKT----EGIRPWTKEDMQQFKSFWS--EGSQPRLAFEFLLYSGLRCSDSCR 211
              +  PKRK     +    W K+ + QF S+    E  +    F  L ++G+R  +   
Sbjct: 158 AKMITIPKRKETWGEKPENFWDKQQLAQFFSYIDPKEELEKYTLFRVLAFAGVRRGECLA 217

Query: 212 AGVQHL----------------QNNIFSIKTQKTGTIITVELPD---------------- 239
                +                      I+  KT     V   D                
Sbjct: 218 LTWNDVNFSKSTLSINKTLTQGMRGKQIIQPPKTKKGQRVIALDKITLNYLKQWRARQRR 277

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISA 298
            ++ L   T    +  F N++    +    + W         + K + HG R  SA++  
Sbjct: 278 EYLMLGFNTIQRGQLIFANSNNGFKSLNTPAKWLNKIIKAHNLKKITVHGFRHTSASMLF 337

Query: 299 DAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVVD 344
           +AGAT  E+    G +        YT      +   + + ++++ +D
Sbjct: 338 EAGATIKEVQTRLGHEDAQTTLNIYTHVT--KKQDNQAAEKLANYLD 382


>gi|294647344|ref|ZP_06724937.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294809035|ref|ZP_06767757.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
 gi|292637303|gb|EFF55728.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294443760|gb|EFG12505.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
          Length = 368

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 48/234 (20%), Positives = 86/234 (36%), Gaps = 14/234 (5%)

Query: 109 FDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168
             +R+      +    +R  + +SA  + ++ R L K A R ++   N    +++ + + 
Sbjct: 137 KKFREYLLNVKQLKHSNRSISLNSASGYYSTFRGLLKIAYRDKWFRENINDYLDKIEPQD 196

Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-----QNNIFS 223
                 T ++++Q  +   +    + A  F   +GLR SD      +       Q     
Sbjct: 197 VKKEYLTLDEVKQLAATPCDIPVLKAASLFACLTGLRISDILNLQWEDFTIAPDQGYCLR 256

Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
           I+TQKT T  T+ +     + L  TP   + F   + K+ M       W K     AG+ 
Sbjct: 257 IRTQKTQTEATLPISYEAYE-LCGTPGTGKVF--KDLKRSMINYPLKNWLKK----AGIT 309

Query: 284 KSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335
           KS   H  R   A I    G   + +      K V   + Y    +  +    N
Sbjct: 310 KSITFHCFRHSYAVIQISLGTDIYTVSKMLTHKNVSTTQIYADLVNSKKRETAN 363


>gi|196229377|ref|ZP_03128242.1| integrase family protein [Chthoniobacter flavus Ellin428]
 gi|196226609|gb|EDY21114.1| integrase family protein [Chthoniobacter flavus Ellin428]
          Length = 354

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 55/329 (16%), Positives = 107/329 (32%), Gaps = 22/329 (6%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
            R +HG   +   K  G++IR     + + +     A       + +  +   +  T   
Sbjct: 15  YRNKHG-TYFALLKVRGKQIRRSLKTDDSALARRRLA---EFRTKAHGLTGDARTMTFNQ 70

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--TPS 131
           L   +        L  +S        + +         R I    I      R    +  
Sbjct: 71  LAKRWLAFIK-PDLRPSSHRRLSGIVETVKPFFAGLPVRSIGQPQIEKWKIKRGGAVSAR 129

Query: 132 SAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           S       +R LF++A      +  NP L +++ K     +   TKE  ++         
Sbjct: 130 SFNYEREVLRRLFEYARGNLRIILDNPALDIKKRKVGKAELVIPTKEQFRKLVETLRAEP 189

Query: 191 QPRLA---FEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQ-----KTGTIITVELPDGF 241
           + ++A    EFL YSGLR +++ +   + +  ++   + T      K   + T+ L    
Sbjct: 190 RVKIAADFVEFLGYSGLRLTEATQVRWRDVNFDSELLLVTGGEQGTKNHEVRTIPLFPPL 249

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADA 300
            +LL      +      +  +                K G+     H +R F  + + +A
Sbjct: 250 RRLLERLAESQPK--RTDSHRLFPLDSAKTAIGTACKKVGLPHFGHHAMRHFFCSNAIEA 307

Query: 301 GATAHELMATYGWKTVD--QAETYTKGAD 327
           G     +    G K      A+TY    +
Sbjct: 308 GCDFKVIAGWLGHKDGGVLVAQTYGHLRN 336


>gi|46562173|ref|YP_009122.1| phage integrase family site specific recombinase [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|46447710|gb|AAS94376.1| site-specific recombinase, phage integrase family [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|311235464|gb|ADP88317.1| integrase family protein [Desulfovibrio vulgaris RCH1]
          Length = 343

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 42/263 (15%), Positives = 80/263 (30%), Gaps = 29/263 (11%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLF 144
           +  +   +        R   +     I   HI   + S     + P++    L  ++  F
Sbjct: 59  SPGTVRVYLPTLLAFFR-FAETPVTHIRVWHIEDWLNSLEQAAYKPATIATKLACIKSFF 117

Query: 145 KWAVRQEYVAINPCLSVERPKR--KTEGIRPWTKEDMQQFKSFWSEGSQPR--LAFEFLL 200
            +  +   + +NP   V+ PK      G R    E++Q+        +  R  L    L 
Sbjct: 118 GYLWKCGLLPLNPAAPVKGPKHIEGHHGDRVLLAEEVQELLEHTRRHAPARDHLMCRLLF 177

Query: 201 YSGLRCSDSCRAGV----QHLQNNIFSIKTQKTGTIITVELPDGFMKLL----------- 245
            +G R +++         + ++   ++    K      + +P      L           
Sbjct: 178 AAGARAAEAVSLRWGDLRRDVRGRWYATVMGKGRKTRHLHIPKDLAADLLVWKGALYSIE 237

Query: 246 ---AMTPIGKETFFINND--KQKMNATQFSIWFKAKATKA-GVNKSAHGVRKFSATISAD 299
                  +     F N     Q +               A G   S H +R   AT S  
Sbjct: 238 PYQPAPGLDAVPLFPNRRVLTQPITVKTAYRIVTRWGEAALGRKISPHWLRHTFATHSRL 297

Query: 300 AGATAHELMATYGWKTVDQAETY 322
           AGAT  ++    G +++     Y
Sbjct: 298 AGATLEQIRVALGHESIQTTIRY 320


>gi|303233777|ref|ZP_07320431.1| site-specific tyrosine recombinase XerC [Finegoldia magna BVS033A4]
 gi|302495211|gb|EFL54963.1| site-specific tyrosine recombinase XerC [Finegoldia magna BVS033A4]
          Length = 326

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 35/204 (17%), Positives = 71/204 (34%), Gaps = 17/204 (8%)

Query: 140 MRVLFKWAVRQEYVAI-NPCLSVERPKRKTEGIRPWTKED------MQQFKSFWSEGSQP 192
           +R  +K+ +    + I NP   ++ PK+        T ++      +   +      ++ 
Sbjct: 101 IRTFYKYLINIRKLDIINPAELLDSPKKNIRQPVYLTLDESLDLLKVILREKDEEIKARD 160

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA-----M 247
                  L  G+R S+     + H++ N   +   K     TV L D  +  +       
Sbjct: 161 YCITVLFLNCGMRLSELSSINIDHIKTNTLRVI-GKGNKERTVYLNDMCLDAIDNYLKIR 219

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG-AT 303
             I  +  FI+  + +M+        +      G +    S H +R  +AT+    G   
Sbjct: 220 PEIDNDALFISKKRNRMSNRAIQYRIEHYLKIGGFDTSIYSVHKLRHTAATLMYQYGNVD 279

Query: 304 AHELMATYGWKTVDQAETYTKGAD 327
              L    G ++V   + YT   +
Sbjct: 280 IKVLQEILGHESVSTTQIYTHVDN 303


>gi|218709877|ref|YP_002417498.1| Site-specific recombinase IntIA [Vibrio splendidus LGP32]
 gi|218322896|emb|CAV19073.1| Site-specific recombinase IntIA [Vibrio splendidus LGP32]
          Length = 324

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 50/312 (16%), Positives = 102/312 (32%), Gaps = 62/312 (19%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
               I EY    H+   A+ +  ++  +  Q I        R +T++H+   +       
Sbjct: 6   FLAYIQEYMLGRHY---ALRTTQAYIYWIHQYILYHNKKHPRNLTSRHVEDFLTHLVVDR 62

Query: 131 SSAIQF----LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            SA +     L ++  L+K  + QE + ++  +   R  +  +     T E++ +F +  
Sbjct: 63  KSAQKTQSLALNAIVFLYKE-IIQEPIELD--MQFRRSDKSRKLPTVMTPEEISRFFNHC 119

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKL 244
           S   +  L ++ +  SGLR  +  R  +Q +  +  S++    K G    V +       
Sbjct: 120 SPNFK--LPYQLMYGSGLRLMECLRLRMQDIDYDYKSVRVWQGKGGKNRIVTIAPELFPS 177

Query: 245 LAMTPIGKETFFINN--------------------------------------------- 259
           + +       ++  +                                             
Sbjct: 178 IKLQQQKSAEYYQQDIHDKAFSGVYLPDSLAKKYPSAERSLNWQFLFPSARLAPDLRTGE 237

Query: 260 -DKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTV 316
             +  ++ T      K  + KA + K  S H +R   AT    +GA    +    G   +
Sbjct: 238 LRRHHIHPTALQKHIKVASQKADIEKNISCHTLRHSFATHLLQSGADIRTVQEQLGHTDL 297

Query: 317 DQAETYTKGADR 328
              + YT   DR
Sbjct: 298 KTTQIYTHIIDR 309


>gi|289444200|ref|ZP_06433944.1| probable phirv2 prophage integrase [Mycobacterium tuberculosis T46]
 gi|289417119|gb|EFD14359.1| probable phirv2 prophage integrase [Mycobacterium tuberculosis T46]
          Length = 291

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 51/286 (17%), Positives = 98/286 (34%), Gaps = 31/286 (10%)

Query: 85  GSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRK-HTPSSAIQFLTSMRV 142
             +   +R  +    D  I+    D D R IT   +R    +    TP+      + +R 
Sbjct: 4   RGIKDRTRAHYRKLLDNHILATFADTDLRDITPAAVRRWYATTAVGTPTMRAHSYSLLRA 63

Query: 143 LFKWAVRQEYVAINPCL-SVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201
           + + A+  + +  NPC  S     R+   IRP T ++++       +  Q  +      +
Sbjct: 64  IMQTALADDLIDSNPCRISGASTARRVHKIRPATLDELETITKAMPDPYQAFV--LMAAW 121

Query: 202 SGLRCSDSCRAGVQHLQ---------------NNIFSIKTQKTGTII-TVELPDGFMKLL 245
             +R  +      + +                   F + T K+   +  + +P   +  +
Sbjct: 122 LAMRYGELTELRRKDIDLHGEVARVRRAVVRVGEGFKVTTPKSDAGVRDISIPPHLIPAI 181

Query: 246 ------AMTPIGKETFF--INNDKQKMNATQFSIWFKAKATKAG-VNKSAHGVRKFSATI 296
                  + P  +   F  +N+  + +  +     F      AG  +   H +R   A +
Sbjct: 182 EDHLHKHVNPGRESLLFPSVNDPNRHLAPSALYRMFYKARKAAGRPDLRVHDLRHSGAVL 241

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGAD-RIRLGIKNSRRISS 341
           +A  GAT  ELM   G  T   A  Y   A  R R       +++ 
Sbjct: 242 AASTGATLAELMQRLGHSTAGAALRYQHAAKGRDREIAALLSKLAE 287


>gi|221218583|ref|YP_002527541.1| class 1 integron integrase protein IntI1 [Escherichia coli]
 gi|261888715|ref|YP_003264403.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Typhimurium]
 gi|215252911|gb|ACJ63570.1| class 1 integron integrase protein IntI1 [Escherichia coli]
 gi|261857302|emb|CBA11369.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Typhimurium]
 gi|312949085|gb|ADR29911.1| class 1 integron integrase protein IntI1 [Escherichia coli O83:H1
           str. NRG 857C]
          Length = 372

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 42/306 (13%), Positives = 93/306 (30%), Gaps = 62/306 (20%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129
           ++ + R+   +   ++ +  ++  +    IR  G      + +  + + +      RK +
Sbjct: 16  VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75

Query: 130 PSSAIQFLTSMRVLFK--WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            S+  Q L ++   +         ++       + RP+         T +++ +   F  
Sbjct: 76  VSTHRQALAALLFFYGKVLCTDLPWLQ-----EIGRPRPSRRLPVVLTPDEVVRILGFL- 129

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
           EG   RL  + L  +G+R S+  +  V+     +    ++  K      + LP+     L
Sbjct: 130 EGEH-RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSL 188

Query: 246 AMTPIGKETFFINN---------------------------------------------D 260
                    +++ +                                              
Sbjct: 189 REQLSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVR 248

Query: 261 KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           +  M    F   FK    +AG+ K  + H +R   AT    +G     +    G   V  
Sbjct: 249 RHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVST 308

Query: 319 AETYTK 324
              YT 
Sbjct: 309 TMIYTH 314


>gi|254437562|ref|ZP_05051056.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
 gi|198253008|gb|EDY77322.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
          Length = 309

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 42/258 (16%), Positives = 82/258 (31%), Gaps = 15/258 (5%)

Query: 82  AHWGS--LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
             WG+  +   +    E   +++    G     K+T  +    +++ K TP  A +    
Sbjct: 24  PDWGNRLVTEITPYDVEKLLNKVAA--GRARPSKVTPNNRARKLQAAKPTPVRANRTGEV 81

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA--FE 197
           +R +F +AV   +   NP  S  R        R    E++ +           R A    
Sbjct: 82  LRKMFTYAVGWGWRDDNPASSFRRRIENPRE-RFLCHEEIHKLAEALETAEDRRAADIIR 140

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKT----QKTGTIITVELPDGFMKLLA----MTP 249
             + +G R  +  +A  +H      S        K   I  + + D    ++     + P
Sbjct: 141 MCMLTGARVGEVRQAQFEHFNLEHLSWSKPASMTKQRKIHRLPISDEAAAIVRQRQLLVP 200

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMA 309
            G    F  +   +        W   +      +   H +R   A++    GA+   +  
Sbjct: 201 RGCVLLFPGDVPGQPVREIRRFWAHIQKQVGIPDVRIHDLRHTFASLLVSGGASLEMIGK 260

Query: 310 TYGWKTVDQAETYTKGAD 327
             G   +   + Y    D
Sbjct: 261 LLGHSQMQTTQRYAHLMD 278


>gi|296161182|ref|ZP_06843991.1| integrase family protein [Burkholderia sp. Ch1-1]
 gi|295888523|gb|EFG68332.1| integrase family protein [Burkholderia sp. Ch1-1]
          Length = 316

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 43/274 (15%), Positives = 93/274 (33%), Gaps = 29/274 (10%)

Query: 84  WGSLA-VNSRISFE---SYFDQIIRKSGDFDYRKITTKHI---RSGVESRKHTPSSAIQF 136
           + +L    +R ++      F      +   D+R +   H+   R  +E R  + ++  + 
Sbjct: 32  FANLDNPRTRRAYRIDLRDFMSFTAITRPEDFRIVARAHVLAWRKVLEDRALSGATIRRK 91

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP--WTKEDMQQFKSFWSEGS---- 190
           L ++  LF++   +  V  NP    +RPK ++   +         +         +    
Sbjct: 92  LAALSSLFEYLCEKNAVDFNPVKGAKRPKVESNEGKTPALGDHQARALLDAPDPATLKGK 151

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTII-TVELPDGFMKLLAM 247
           + R     LLY GLR  + C+  V+ +  +  +  ++    G  +  + L  G  + +  
Sbjct: 152 RDRALLSVLLYHGLRREELCQLKVRDIHARRGVLHLRIHGKGNKLRYLPLHAGSAERIHA 211

Query: 248 -------TPIGKETFFINNDKQ---KMNATQFSIWFKAKATKAGVNKS---AHGVRKFSA 294
                          F    ++    + A        A A  A +       H +R  +A
Sbjct: 212 YLEVAGHGETPHAPLFQPARRKTHAALTADGVYKIVLAYAAGAQIEVQGFGVHSLRATAA 271

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           T + +  A   ++    G   +     Y +   R
Sbjct: 272 TNALEHEADIAKVQEWLGHANIATTRIYDRRKSR 305


>gi|260201791|ref|ZP_05769282.1| integrase [Mycobacterium tuberculosis T46]
          Length = 296

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 51/286 (17%), Positives = 98/286 (34%), Gaps = 31/286 (10%)

Query: 85  GSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRK-HTPSSAIQFLTSMRV 142
             +   +R  +    D  I+    D D R IT   +R    +    TP+      + +R 
Sbjct: 9   RGIKDRTRAHYRKLLDNHILATFADTDLRDITPAAVRRWYATTAVGTPTMRAHSYSLLRA 68

Query: 143 LFKWAVRQEYVAINPCL-SVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201
           + + A+  + +  NPC  S     R+   IRP T ++++       +  Q  +      +
Sbjct: 69  IMQTALADDLIDSNPCRISGASTARRVHKIRPATLDELETITKAMPDPYQAFV--LMAAW 126

Query: 202 SGLRCSDSCRAGVQHLQ---------------NNIFSIKTQKTGTII-TVELPDGFMKLL 245
             +R  +      + +                   F + T K+   +  + +P   +  +
Sbjct: 127 LAMRYGELTELRRKDIDLHGEVARVRRAVVRVGEGFKVTTPKSDAGVRDISIPPHLIPAI 186

Query: 246 ------AMTPIGKETFF--INNDKQKMNATQFSIWFKAKATKAG-VNKSAHGVRKFSATI 296
                  + P  +   F  +N+  + +  +     F      AG  +   H +R   A +
Sbjct: 187 EDHLHKHVNPGRESLLFPSVNDPNRHLAPSALYRMFYKARKAAGRPDLRVHDLRHSGAVL 246

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGAD-RIRLGIKNSRRISS 341
           +A  GAT  ELM   G  T   A  Y   A  R R       +++ 
Sbjct: 247 AASTGATLAELMQRLGHSTAGAALRYQHAAKGRDREIAALLSKLAE 292


>gi|237811210|ref|YP_002895661.1| phage integrase family protein [Burkholderia pseudomallei MSHR346]
 gi|237503525|gb|ACQ95843.1| phage integrase family protein [Burkholderia pseudomallei MSHR346]
          Length = 443

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 51/300 (17%), Positives = 108/300 (36%), Gaps = 20/300 (6%)

Query: 45  PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-II 103
             +++ +   +       + R+ P T+K L +++ +         ++  +++   D+ I+
Sbjct: 75  QDWLADVRKGSDPSAAKQAARQAP-TVKELCTQFIEEYSKTRNKPSTVETYQDQIDRYIV 133

Query: 104 RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI--NPCLSV 161
            K G     ++T   + + +       ++A + L  +R +   A    Y     NPC  V
Sbjct: 134 PKLGRIKVPELTRMDVTAMMRDMVKISATANRVLACLRKMLNMAEVWGYRPDGSNPCRHV 193

Query: 162 ERPKRKTEGIRPWTKEDMQQFKSFWS-------EGSQPRLAFEFLLYSGLRCSDSCRAGV 214
            +  R++   R  T E++ +  ++         E     LA         R S+      
Sbjct: 194 PK-YRESGETRYITDEELARLYAYLDRADIEGLEHPTLTLAIRLQFEFSARMSEIRMLQW 252

Query: 215 Q--HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI--GKETFFINNDKQ--KMNATQ 268
                 +   +    KTG  I+  + +   +LL+      G      +   +   ++   
Sbjct: 253 AWIDFDSRRVAWPDSKTGG-ISKPMSEAAHQLLSNAHRIEGSPYVCPSIYDKEIPLSEGT 311

Query: 269 FSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           +   ++    +A V     HG+R  +AT  A++G      MA    KTV     Y    D
Sbjct: 312 YYNSWRRILQRAKVPHVGTHGIRHRAATDIANSGVPVKVGMALTAHKTVSMFMRYVHTED 371


>gi|168233685|ref|ZP_02658743.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|194471329|ref|ZP_03077313.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|194457693|gb|EDX46532.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|205332273|gb|EDZ19037.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
          Length = 359

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 51/302 (16%), Positives = 94/302 (31%), Gaps = 34/302 (11%)

Query: 55  TPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI 114
           TP        R    T+   I  Y        LA N+     +    +  K G+    ++
Sbjct: 60  TPAALIEKLKRSDTFTVSMWIDRYNVLLKRRDLAANTYKIRGNQLATVREKMGEMILAEV 119

Query: 115 TTKHIRSGVESR----KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170
           TT+HI   +ES     K+T + A++  + +  +F+ A+ +  +  NP      P+ K   
Sbjct: 120 TTRHIAEFLESWIAEGKNTMAGAMR--SVLSDMFREAIVEGRITTNPVEPTRAPEIKVAR 177

Query: 171 IRPWTKEDMQQFKSFWSEGSQPR----LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226
            R      ++ + +  +          LA +  L +G R  D        + +    +  
Sbjct: 178 ERL----QLETYNATRTAAEHLPVWFPLAMDLALVTGQRREDIVNMKFSDIVDGRLHVTQ 233

Query: 227 QKTGTIITVELPDGFMK--------LLAMTPIGKETFFI------NNDKQKMNATQFSIW 272
            KTG  I   L              +     + +  F I      N+    ++    +  
Sbjct: 234 IKTGMKIAFPLSLTLEAPGLRLGTVIDRCRLVSRTDFMISAGIRKNSPTGNIHPDGLTKK 293

Query: 273 FKAKATKAGVNKS-----AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           F      +GV  S      H +R   A                 G  + +  + Y    D
Sbjct: 294 FVKARKISGVKFSDNPPTFHEIR-SLAGRLYKDERGEEFAQKLLGHTSENTTKLYLDERD 352

Query: 328 RI 329
             
Sbjct: 353 NK 354


>gi|153807728|ref|ZP_01960396.1| hypothetical protein BACCAC_02010 [Bacteroides caccae ATCC 43185]
 gi|160886150|ref|ZP_02067153.1| hypothetical protein BACOVA_04157 [Bacteroides ovatus ATCC 8483]
 gi|160889087|ref|ZP_02070090.1| hypothetical protein BACUNI_01508 [Bacteroides uniformis ATCC 8492]
 gi|149129337|gb|EDM20551.1| hypothetical protein BACCAC_02010 [Bacteroides caccae ATCC 43185]
 gi|156108035|gb|EDO09780.1| hypothetical protein BACOVA_04157 [Bacteroides ovatus ATCC 8483]
 gi|156861554|gb|EDO54985.1| hypothetical protein BACUNI_01508 [Bacteroides uniformis ATCC 8492]
          Length = 354

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 43/290 (14%), Positives = 96/290 (33%), Gaps = 35/290 (12%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRK--------SGDFDYRKITTK---------- 117
            +Y+  A +     + R     +  +             G   + +I             
Sbjct: 70  DKYKLKADFL---EHYRKQLRKHDQKWEFVYLHFNNFVHGKCTFEEIDIDLCNKFREYLL 126

Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
             +      + T +SA  + ++ R   K   R   +  N    +++ + +       + +
Sbjct: 127 TAKKLRRKGRITRNSASGYWSTFRGFLKILYRNGMIKTNVNDFLDKIETEDVVKEYLSVD 186

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-----QNNIFSIKTQKTGTI 232
           ++ +      +    ++A  F   + LR SD      + +           I TQK    
Sbjct: 187 ELYKLAETPCKKPILKIASLFSCMTSLRISDILALCWEDIVDYSAGGKCVHIITQKNKAE 246

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290
             + + +  + L+      K   F     + +  +   I  K     AG+ K  + H  R
Sbjct: 247 DIIPISEEALGLIGYNSEKKGLVF-----KGLMRSWTQIPMKEWIRSAGITKNITFHSYR 301

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
           +  AT+ A AG     + +    K++   + Y K  D  +   + S++I+
Sbjct: 302 RTFATLQAAAGTDIRTIQSIMAHKSITTTQRYIKVVDANKR--EASKKIT 349


>gi|323702859|ref|ZP_08114517.1| integrase family protein [Desulfotomaculum nigrificans DSM 574]
 gi|323532117|gb|EGB21998.1| integrase family protein [Desulfotomaculum nigrificans DSM 574]
          Length = 320

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 44/294 (14%), Positives = 93/294 (31%), Gaps = 50/294 (17%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
             LI +Y               S    FDQ    +G+ +         +  V+    + S
Sbjct: 9   ASLIEQYIDFKRNLGYKFKDAESVYYLFDQFTILNGETEIGITKELANKWAVKRPNESDS 68

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP--WTKEDMQQFKSFWSEG 189
           +  + +  +     +     Y    P   +  PK       P  +++E+M+         
Sbjct: 69  TCYKRVMYLIQFSSFLNDSGY----PSYILRLPKAYKSTFTPYIFSREEMKAIFE----- 119

Query: 190 SQPRL---------------AFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTI 232
           +  RL                   L  +G+R  ++    V+ +        I+  K G  
Sbjct: 120 ASDRLKIDNSMDSAVNVIPAILRMLYGTGIRIGEAVSLKVKDVNLTEKYIIIRQSKNGME 179

Query: 233 ITVELPDGFMKL-------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284
             +   D    +       L +    ++ FF+  + ++ N      WF+    +AG++  
Sbjct: 180 RMIPFSDSLADVCRQYRNSLQVLQDPEDYFFVKRNGRRCNPKGIYEWFRKVLWEAGISHG 239

Query: 285 ------SAHGVRKFSA----TISADAGATAH----ELMATYGWKTVDQAETYTK 324
                   H +R   +    T  A++G   +     L    G ++++  E Y +
Sbjct: 240 GKRQGPRLHDLRHAFSVHSLTAMAESGLDLYYSLPILSEYLGHQSLEATEKYVR 293


>gi|291004130|ref|ZP_06562103.1| integrase/recombinase [Saccharopolyspora erythraea NRRL 2338]
          Length = 301

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 37/269 (13%), Positives = 82/269 (30%), Gaps = 29/269 (10%)

Query: 85  GSLAVNSRISFESYFDQIIRKS--GDFDYRKIT------TKHIRSGVESRKHTPSSAIQF 136
             L+ ++  ++      ++     GD + + +        +   +   +   + S+  + 
Sbjct: 16  RGLSAHTVRAYIGDVVSLLDHFCAGDEERKGLNGLGLTVLREWLAAQHADGASRSTLARR 75

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF--------KSFWSE 188
             S R    WA R E +  +P   +  P  K +       E  +          +     
Sbjct: 76  AASARTFTAWAHRAELLPHDPGPRLAAPAPKRKLPTVLRAEQAKSAMSASQAGAEQGDPI 135

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-----TIITVELPDGFMK 243
             +     E L  +G+R S+ C   +  + +    ++    G         V   D   +
Sbjct: 136 ALRDHAVVELLYATGVRVSELCGLDLDDVDHERRVVRVIGKGDKERAVPFGVPAEDAVSR 195

Query: 244 LLAM------TPIGKETFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSAHGVRKFSAT 295
            ++       T       F+     +++             A     +   HG+R  +AT
Sbjct: 196 WISAGRPELATDASGPALFLGARGGRLDPRAVRRVVHDAVGAVSGATDVGPHGLRHSAAT 255

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTK 324
              + GA    +    G  T+   + YT 
Sbjct: 256 HLLEGGADLRSVQELLGHATLATTQLYTH 284


>gi|227499531|ref|ZP_03929638.1| possible tyrosine recombinase XerC [Anaerococcus tetradius ATCC
           35098]
 gi|227218410|gb|EEI83661.1| possible tyrosine recombinase XerC [Anaerococcus tetradius ATCC
           35098]
          Length = 329

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 49/300 (16%), Positives = 98/300 (32%), Gaps = 53/300 (17%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIR-------KSGDFD-------------------Y 111
           Y KS     L+ N+   +    + +IR         GDF+                   +
Sbjct: 16  YLKSIR--GLSSNTIREYNYDLNLMIRFMLVRKIYYGDFERFDEQFDPESINKIVDPKFF 73

Query: 112 RKITTKHIRSGV----ESRKHTPSSAIQFLTSMRVLFKWA-VRQEYVAINPCLSVERPKR 166
             ++ +   S +      +    S+  + ++++R  +K+     E +  N    +  PK 
Sbjct: 74  ETLSLQDFYSYLSYLDNDKSDLASTRSRKISAIRSFYKYLFSEIEVIDTNISDKLTNPKI 133

Query: 167 KTEGIRPWTKEDMQQFKSFWS------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220
                   T ++ ++               +        L +G+R S+     ++ + N+
Sbjct: 134 SQRQPVYLTLQETEKLLETVKGEQNEFLKCRDLAIIFTFLTTGMRLSELVSVNLRDISND 193

Query: 221 IFSIKTQKTGTIITVELPDGFMKLLAMTP---------IGKETFFINNDKQKMNATQFSI 271
            F+I   K     T+ L    + L+             I  +  FI+  K++++      
Sbjct: 194 HFNII-GKGNKERTIYLTSNCIDLIEKYIEVRGKYVKNIDIDALFISTRKKRISNRAVQS 252

Query: 272 WFKAKATKAGVN---KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGAD 327
                  KAG +    S H +R  +AT+    G      L    G   V   + YT   D
Sbjct: 253 TIDKYLKKAGFDVSVYSTHKLRHTAATLMYKYGNVDIRALKDILGHANVSTTQIYTHLDD 312


>gi|237666570|ref|ZP_04526555.1| site-specific recombinase, phage integrase family [Clostridium
           butyricum E4 str. BoNT E BL5262]
 gi|237657769|gb|EEP55324.1| site-specific recombinase, phage integrase family [Clostridium
           butyricum E4 str. BoNT E BL5262]
          Length = 361

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 37/270 (13%), Positives = 91/270 (33%), Gaps = 44/270 (16%)

Query: 88  AVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFLTSMRVL 143
            +N++  +    D  II    D+  +++    ++  +  +K    + SS   F   +   
Sbjct: 81  KLNTQTYYRRILDNHIIPYFKDYKLKQLKADALQKFLNYKKRNGLSKSSITNFYGVLSGA 140

Query: 144 FKWAV-RQEYVAINPCLSVERPK-----RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE 197
            K+AV    Y+  NP   V  PK     ++ + ++  T E+  +  + +  G    +  +
Sbjct: 141 LKYAVYPCNYIKENPMYYVNIPKYDEAQKEAKDLKIITIEEFTRIINRFPMGENLYIPLQ 200

Query: 198 FLLYSGLRCSDSCRAGVQHLQ--NNIFSIK------------------TQKTGTIITVEL 237
               +G+R  +       ++   N I  +K                   +   +  ++ +
Sbjct: 201 IGFNTGMRGGEIVALTWDNVDLENGIIHVKHTLIETGTKGMKKFILGTPKTKSSYRSIHI 260

Query: 238 PDGFMKLLAMTPI-------------GKETFFINN-DKQKMNATQFSIWFKAKATKAGVN 283
            D  + +L                      F     + + +  + +    +    +  +N
Sbjct: 261 GDTLINILKHHKEWQLMNKEKYGEWYEHSNFVCTKENGKPLTTSIYKYLSRVVNNELCIN 320

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGW 313
            + H +R   AT+  + GA   ++    G 
Sbjct: 321 FTMHSLRHTHATLLLENGANMKDMQKRLGH 350


>gi|159046242|ref|YP_001541914.1| integrase family protein [Dinoroseobacter shibae DFL 12]
 gi|157914001|gb|ABV95433.1| phage integrase [Dinoroseobacter shibae DFL 12]
          Length = 295

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 45/284 (15%), Positives = 92/284 (32%), Gaps = 18/284 (6%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT---P 130
           L     +      +   ++ S            G       T + +R+       T   P
Sbjct: 9   LRQRMIEDMRIRGMGDKAQKSHIRAIKDFAAFLGRSPDTA-TPEDLRAYQLHMTDTGITP 67

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM-QQFKSFWSEG 189
           S+    + ++R  F     +E +       ++      +    ++ E++     +    G
Sbjct: 68  STFNTRIVALRFFFGMTCGREEMKR----YMQFRTEPRKLPVVFSVEEVSDILMAAPGPG 123

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLLAM 247
            + R A      +GLR ++ C   +  + ++     ++  K      V L  G ++LL  
Sbjct: 124 LKYRAALSISYGAGLRAAEVCNLKIGDIDSDRMLIHVEQGKGQKDRKVMLSPGLLELLRA 183

Query: 248 TPIGKET---FFINNDK-QKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301
                      F    K   ++  Q +  F +    AGV K  + H +R   AT   +A 
Sbjct: 184 WWRETRPEGWLFPGKPKINPISPRQLNRAFTSAKHMAGVKKPATLHTLRHSFATHLLEAN 243

Query: 302 ATAHELMATYGWKTVDQAETYTKGADR-IRLGIKNSRRISSVVD 344
                +    G   +     YT  A + IR  +     ++ + D
Sbjct: 244 TDVRVIQVLLGHAKLTTTARYTHVATKTIRDTVSPYEMLARLQD 287


>gi|325107529|ref|YP_004268597.1| integrase family protein [Planctomyces brasiliensis DSM 5305]
 gi|324967797|gb|ADY58575.1| integrase family protein [Planctomyces brasiliensis DSM 5305]
          Length = 310

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 51/278 (18%), Positives = 102/278 (36%), Gaps = 18/278 (6%)

Query: 59  EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH 118
           E I    ++  T   LI  +           N++ ++     + +        R +    
Sbjct: 28  EVIGPVVQQADTDDQLIELWL-----HGRPKNTQTAYGREIVRFMDWV-KKPLRTVKLGD 81

Query: 119 IRSGVESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE-GIRPWT 175
           +++  +        SS  + LT+++ LF +  R  Y++ +   +++ P  + E   R   
Sbjct: 82  VQAFADELSDSLKESSLHRALTAVKSLFAFGFRLGYLSFDVGRAMKLPTFRDELADRILG 141

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKT-QKTGTI 232
           + D+ +  S   +  + R     L   G R S+ C     HL  +++   I    K G  
Sbjct: 142 ETDVLRIISLEPQP-RNRALLLTLYAGGFRVSELCSLKWCHLQERDSAGQITVFGKGGKT 200

Query: 233 ITVELPD---GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287
            TV +P      +  L  +   +   F +     ++ +      K  A +AG++K  S H
Sbjct: 201 RTVLMPQSVWEAVMKLRDSDSSEAPVFRSRKNGHLDESAVWRIVKKAAERAGIDKNVSCH 260

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
             R   A+ + D     H + AT G  ++     Y   
Sbjct: 261 WFRHAHASHALDRNCPIHLVQATLGHASISTTGRYLHA 298


>gi|237710114|ref|ZP_04540595.1| transposase [Bacteroides sp. 9_1_42FAA]
 gi|229455576|gb|EEO61297.1| transposase [Bacteroides sp. 9_1_42FAA]
          Length = 320

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 44/267 (16%), Positives = 90/267 (33%), Gaps = 27/267 (10%)

Query: 85  GSLAVNSRISFESYFDQIIR------KSGDFDYRKITTKHIRSGVESRKHTP----SSAI 134
             +A  +   +E+                D    +I+ + I       K       ++A 
Sbjct: 41  TDMAPATVQRYETSLKHTRDFVWETYHKKDVLLDEISRQFIEDYEFWLKTEKKCCHNTAT 100

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQ 191
           ++L + + + + A+ + ++  +P L + R              ++Q+  S        SQ
Sbjct: 101 KYLKNFKKIIRIALAKGWMKNDPFLEI-RFSLDKVEPDFLEDSEIQKLISKEIDIPRLSQ 159

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVELPDGFMKLLA 246
            R  F F  ++GL  SD      +H+  +           QKT  +  + L +  +K+L 
Sbjct: 160 VRDIFVFCCFTGLAFSDIHGLRKEHIVEDSNGVRWIRKGRQKTKIMCNIPLMEIPLKILE 219

Query: 247 MTPIGKETFFINNDK---QKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAG 301
                +   +          +   + + + K  A   G+ K+   H  R   AT +   G
Sbjct: 220 KYSTNE---YCKKHGVLFPVLCNQKMNAYLKELADICGIKKTLTTHVGRHTFATFALANG 276

Query: 302 ATAHELMATYGWKTVDQAETYTKGADR 328
            +   +    G   V     Y +  DR
Sbjct: 277 VSIESVAKMLGHTNVQMTRHYARVLDR 303


>gi|167552499|ref|ZP_02346252.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|205322867|gb|EDZ10706.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
          Length = 359

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 47/287 (16%), Positives = 89/287 (31%), Gaps = 34/287 (11%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--- 126
           T+   I  Y        LA N+     +    +  K G+     +TT+HI   +ES    
Sbjct: 75  TVSMWIDRYDVLLKRRDLAANTYKIRGNQLATVREKMGEMILADVTTRHIAEFLESWIAE 134

Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
            K+T + A++  + +  +F+ A+ +  +  NP      P+ K    R      ++ + + 
Sbjct: 135 GKNTMAGAMR--SVLSDMFREAIVEGRITTNPVEPTRAPEIKVARERL----QLETYNAT 188

Query: 186 WSEGSQPRLAF----EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241
            +        F    +  L +G R  D        + +    +   KTG  I   L    
Sbjct: 189 RAAAEHMPAWFPLAMDLALVTGQRREDIVNMKFSDIVDGRLHVTQIKTGMKIAFPLSLNL 248

Query: 242 MK--------LLAMTPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNKS-- 285
                     +     + +  F I      N+    ++    +  F      +GV  S  
Sbjct: 249 EAPGLRLGTVIDRCRLVSRTDFMISAGIRKNSPTGNIHPDGLTKKFVKARKISGVKFSDN 308

Query: 286 ---AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
               H +R   A                 G  + +  + Y    D  
Sbjct: 309 PPTFHEIR-SLAGRLYKDERGEEFAQKLLGHTSENTTKLYLDERDNK 354


>gi|319899442|ref|YP_004159539.1| integrase/recombinase XerC [Bartonella clarridgeiae 73]
 gi|319403410|emb|CBI76978.1| integrase/recombinase XerC [Bartonella clarridgeiae 73]
          Length = 322

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 36/262 (13%), Positives = 76/262 (29%), Gaps = 25/262 (9%)

Query: 88  AVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESRK---HTPSSAIQFLTSM 140
           A+        +   + +  G          +     R+ +  R+       S  + + S+
Sbjct: 44  AIAYERDTRQFLFFLCQHLGYQPTLNDLANLRVADFRAYLAYRRTQNINARSLSRNMASL 103

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE-------DMQQFKSFWSEGSQPR 193
           R  F +  R++ V +     V  PK      +  T E       +  Q ++     ++  
Sbjct: 104 RSFFNYLSREKEVNVPAAKLVRTPKYPKSLPKALTIESALRIVKEENQQENEPWIIARNT 163

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI--KTQKTGTIITVEL----PDGFMKLLAM 247
                L   G+R S++     +   +        T K G    V +     +     L  
Sbjct: 164 AILILLYGCGMRISEALALTPEQFADPSIKSLSVTGKGGKTRLVPMIPIVHEAVENYLKC 223

Query: 248 TP---IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGA 302
            P   +  +  F     + +         +      G+ ++   H +R   AT     G 
Sbjct: 224 CPYPLLNNQPIFRGVRGKPLQPAIIQRTVQNLRAHLGLPETTTPHALRHSFATHLLSRGG 283

Query: 303 TAHELMATYGWKTVDQAETYTK 324
               +    G   +   + YT 
Sbjct: 284 DLRTIQELLGHACLSTTQVYTH 305


>gi|262202039|ref|YP_003273247.1| integrase family protein [Gordonia bronchialis DSM 43247]
 gi|262085386|gb|ACY21354.1| integrase family protein [Gordonia bronchialis DSM 43247]
          Length = 304

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 36/272 (13%), Positives = 80/272 (29%), Gaps = 26/272 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSG-----DFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
              + ++  ++      +I  +G       D      +   +    R    ++  + ++S
Sbjct: 23  MGRSPHTVRAYVGDVRGLIAFAGARGVATADIDLTLLRAWLAEHTRRGAARTTIARQVSS 82

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW--------SEGSQ 191
           ++    WAVR+  ++ +P   +  PK             +    +              +
Sbjct: 83  VKTFCAWAVREGLMSDDPSHRLRAPKAHRTLPAVLAPAQVPDVIAAAAAERPQGDPIALR 142

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQ---------NNIFSIKTQKTGTIITVELPDGFM 242
             +  E L   G+R  + C   V  +                +T   G    V L     
Sbjct: 143 DTVIVEVLYAGGIRVGELCGLDVDDVDRDRRVLRVIGKGDKERTVPYGAPAAVALDAWLR 202

Query: 243 KLLAMTPIGKE--TFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISAD 299
                    +      +     +++             +AG      HG+R  +AT   +
Sbjct: 203 HGRPALATERSGAALLLGARGGRLDQRMARTVVTRAVEQAGGPAMGPHGLRHSAATHLLE 262

Query: 300 AGATAHELMATYGWKTVDQAETYTK-GADRIR 330
            GA    +    G  ++   + YT    +R+R
Sbjct: 263 GGADLRVVQELLGHSSLATTQIYTHVSVERLR 294


>gi|41023639|emb|CAF18331.1| integrase/recombinase IntI1 [Morganella morganii subsp. morganii]
          Length = 320

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 42/306 (13%), Positives = 93/306 (30%), Gaps = 62/306 (20%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129
           ++ + R+   +   +  +  ++ ++    IR  G      + +  + + +      RK +
Sbjct: 16  VLDQLRERIRYLHYSSRTEQAYVNWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75

Query: 130 PSSAIQFLTSMRVLFK--WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            S+  Q L ++   +         ++       + RP+         T +++ +   F  
Sbjct: 76  VSTHRQALAALLFFYGKVLCTDLPWLQ-----EIGRPRPSRRLPVVLTPDEVVRILGFL- 129

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
           EG   RL  + L  +G+R S+  +  V+     +    ++  K      + LP+     L
Sbjct: 130 EGEH-RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSL 188

Query: 246 AMTPIGKETFFINN---------------------------------------------D 260
                    +++ +                                              
Sbjct: 189 REQLSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVR 248

Query: 261 KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           +  M    F   FK    +AG+ K  + H +R   AT    +G     +    G   V  
Sbjct: 249 RHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVST 308

Query: 319 AETYTK 324
              YT 
Sbjct: 309 TMIYTH 314


>gi|260855764|ref|YP_003229655.1| putative integrase [Escherichia coli O26:H11 str. 11368]
 gi|257754413|dbj|BAI25915.1| putative integrase [Escherichia coli O26:H11 str. 11368]
          Length = 371

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 41/278 (14%), Positives = 86/278 (30%), Gaps = 30/278 (10%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--K 127
           T+   I  Y+       ++ N+     +  + I  K G     +ITT+HI   ++     
Sbjct: 75  TMADWIERYKTILIRRKVSRNTYKIRVNQLETIKEKLGGVLLTEITTRHIAEFLDLWIEG 134

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----K 183
              + A    + +  +F+ A+ +  ++ NP      PK      R      ++ +    +
Sbjct: 135 GKNTMAGSMRSVLSDMFREAIVEGRISQNPVTPTRAPKIVVTRERL----KLKTYNCIRE 190

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
           +     +   LA +  L +G R  D        + ++   I+  K G +I + L      
Sbjct: 191 AADQLPTWFPLAMDLALVTGQRREDITNMRFSEIYDDRLHIRQIKKGMMIAIPLSLSLPV 250

Query: 244 LLAMTPI--------GKETFFINNDKQKMN------ATQFSIWFKAKATKAGV-----NK 284
                           +  + I+   +K +          +  F A     G+       
Sbjct: 251 AGLRLGTVVEQCRMVSRGDYLISAGIRKNSPDGSIHPDGLTKKFVAARKLTGIQFSENPP 310

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           + H +R   A                 G  +    + Y
Sbjct: 311 TFHEIR-SLAGRLYKETCGEEFAQRLLGHTSEKTTKMY 347


>gi|68262570|emb|CAJ13499.1| integrase/recombinase [Klebsiella pneumoniae]
          Length = 320

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 42/306 (13%), Positives = 94/306 (30%), Gaps = 62/306 (20%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129
           ++ + R+   +   ++ +  ++ ++    IR  G      + +  + + +      RK +
Sbjct: 16  VLDQLRERIRYLHYSLRTEQAYVNWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75

Query: 130 PSSAIQFLTSMRVLFK--WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            S+  Q L ++   +         ++       + RP+         T +++ +   F  
Sbjct: 76  VSTHRQALAALLFFYGKVLCTDLPWLQ-----EIGRPRPSRRLPVVLTPDEVVRILGFL- 129

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
           EG   RL  + L  +G+R S+  +  V+     +    ++  K      + LP+     L
Sbjct: 130 EGEH-RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSL 188

Query: 246 AMTPIGKETFFINN---------------------------------------------D 260
                    +++ +                                              
Sbjct: 189 REQLSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVR 248

Query: 261 KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           +  M    F   FK    +AG+ K  + H +R   AT    +G     +    G   V  
Sbjct: 249 RHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVST 308

Query: 319 AETYTK 324
              YT 
Sbjct: 309 TMIYTH 314


>gi|323126847|gb|ADX24144.1| putative transposon integrase [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 414

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 48/327 (14%), Positives = 97/327 (29%), Gaps = 67/327 (20%)

Query: 85  GSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGV----ESRKHTPSSAIQFLTS 139
             L  N+  +++  ++  +    G+   + +    IRS      E R    ++     T 
Sbjct: 83  QGLKDNTFKNYQYLYEYFVDDNLGNVLIKNLKKSDIRSFYNYLAEERNVKVNTIDNIHTV 142

Query: 140 MRVLFKWAVRQEYVAINPCLS-VERPKR----KTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
           +  +   AV  +Y+  NP  + ++  K+      +  +  T  +   F+ F    ++ + 
Sbjct: 143 LHQVLDLAVDDDYILKNPSDNALKELKQSRTNGKKSRKALTLAEQNLFEDFLRTNNKYKG 202

Query: 195 A---FEFLLYSGLRCSDSCRAGVQHLQNNI---------------------FSIKTQKTG 230
               F  +L++GLR  +        +  N                      F++ T KT 
Sbjct: 203 WYPIFITMLWTGLRVGEVTGLRWDDIDFNNNTISVNHTLVYYQTRTERGCDFTVNTPKTK 262

Query: 231 T-IITVELPDGFMKLLAMTP-------------IGKET--FFINNDKQKMNATQFSIWFK 274
               TV L     + L M               I   T   F+N      +    +   K
Sbjct: 263 AGERTVPLLPKVKEALKMEKQRQTELEISCRVVINGFTNFIFLNRFGDLYHQGTLNKALK 322

Query: 275 AKATKAGV--------------NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
                                 N S H +R    T   +AG     +    G   +    
Sbjct: 323 RIIRDCNFSVLDGKINSEVTLPNFSNHSLRHTFTTRMVEAGTNLKAMQDILGHSDISTTM 382

Query: 321 -TYTKGADRIRLGIKNSRRISSVVDSD 346
             Y + +    L         + ++++
Sbjct: 383 NIYAEAS--KDLKEIEMENFGNKIENN 407


>gi|319743915|gb|EFV96301.1| integrase [Streptococcus agalactiae ATCC 13813]
          Length = 362

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 48/339 (14%), Positives = 115/339 (33%), Gaps = 34/339 (10%)

Query: 11  VTKERTRHGKIIYYFRK----GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
           +   + ++G   Y FR       G++  +     S F      A       ++ I +P+ 
Sbjct: 3   IESYKKKNGTTAYRFRVYIGVIDGKKKYIKR---SGFTSK-KLAKQALINLQQEIENPKD 58

Query: 67  KPTT-LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
           K T   K L   +  +            +  +  + I+   G +  + +T   I+   + 
Sbjct: 59  KSTLLFKDLTKIWLDNYEKTVQGSTYLKTKRNIENHILPSLGSYQIKDLTPLIIQKYADE 118

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP---WTKEDMQQF 182
                  + + +  +R +   AV+ +Y+  NP   V  PK +    +    + K+++++F
Sbjct: 119 WSTKLKYSSKIVGIVRNILNHAVKFQYITSNPSAPVSAPKIQRTINKKKDYYNKDELKEF 178

Query: 183 KSFWSEGSQPRLA--FEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--------------T 226
                      +   F  L ++GLR  +      +  +N    +               T
Sbjct: 179 VQLVYNTDDINIIATFRLLAFTGLRKGEMLALTWKDYRNGTLDVNKAITRDIAGEHIGPT 238

Query: 227 QKTGTIITVELPDGFMKLLAMTPI--GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284
           +   +   + L    M +L        K  + + +   +  +      +  +  +  ++K
Sbjct: 239 KNKSSDRLISLDPETMNVLDNLHKTYPKTKYILESASGRWISPTQPRRWLVQILRDSISK 298

Query: 285 ----SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
                 HG R   A++  ++G T  ++    G + +   
Sbjct: 299 LEPIRIHGFRHTHASLLFESGLTLKQVQHRLGHEDLKTT 337


>gi|255690122|ref|ZP_05413797.1| mobilizable transposon, int protein [Bacteroides finegoldii DSM
           17565]
 gi|260624404|gb|EEX47275.1| mobilizable transposon, int protein [Bacteroides finegoldii DSM
           17565]
          Length = 337

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 46/290 (15%), Positives = 96/290 (33%), Gaps = 35/290 (12%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRK--------SGDFDYRKITTK---HIRSGVE 124
             Y+  A +       R     +  +             G   + +I        R  + 
Sbjct: 53  DRYKLKADFLEY---YRKQLRKHDQKWEFVYLHFRNFVHGKCTFEEIDIDLCNKFREYLL 109

Query: 125 SRKH-------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
           S K        T +SA  + ++ R   K   R   +  N    +++ + +       + E
Sbjct: 110 SAKKLRRNGPITRNSASGYWSTFRGFLKILYRNGMIKTNVNDFLDKIETEDVVKEYLSVE 169

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-----QNNIFSIKTQKTGTI 232
           ++ +      +    ++A  F   + LR SD      + +           I TQK    
Sbjct: 170 ELYKLAETPCKKPILKIASLFSCMTSLRISDILALCWEDIVDYSAGGKCVHIITQKNKAE 229

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290
             + + +  + L+  +   K   F     + +  +      K     AG+ K  + H  R
Sbjct: 230 DIIPISEEALGLIGYSSEKKGLVF-----KGLMRSWTQAPMKEWIRSAGITKNITFHSYR 284

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
           +  AT+ A AG     + +    K++   + Y K  D  +   + S++I+
Sbjct: 285 RTFATLQAAAGTDIRTIQSIMAHKSITTTQRYIKVVDANKR--EASKKIT 332


>gi|254451033|ref|ZP_05064470.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 238]
 gi|198265439|gb|EDY89709.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 238]
          Length = 368

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 47/322 (14%), Positives = 110/322 (34%), Gaps = 20/322 (6%)

Query: 9   PFVTKERTRHGKIIYYFRK---GHGRRIRL-PYPHESTFIPAYMSALTGSTPKREYINSP 64
             +     +  K  +YF+K   G  +RI +  +P  S       +        R    + 
Sbjct: 38  KGLVLFVGKRSKT-WYFQKDVGGQTKRILIGRFPIISAQAARQTALGFALEMGRGAGKAA 96

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
           +    TL+  +  Y         +  +++   +     ++        +I+         
Sbjct: 97  QIGAPTLEAAMEVYLARPKLR--SETNKVGMRAQLTLHLKDWMRLPLDEISKAMTVRRHH 154

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
               +PS+A   L S R ++  A R   +   P +++E  + K +G      +  ++   
Sbjct: 155 DMAGSPSAANHVLRSFRAIYNHARRTCDLPECPTMAIEWFEDKPDGRIIENLKHWRKTID 214

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
                   R+ +E LL++GLR ++      + +  +   +   K G    + +     ++
Sbjct: 215 DLPNPIH-RVFYELLLFTGLRKTEVFTLKWEQVLEDRIHLPMTKNGRSFDLPISQLHHEI 273

Query: 245 LAMT-PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGAT 303
           LA   P+  +  F          ++     +       +  + H  R+  AT++ +AG  
Sbjct: 274 LAPLRPLSSDWVF------PSPKSETGHITRPVR----LKYNPHMHRRTFATVAMEAGVL 323

Query: 304 AHELMATYGWKTVDQA-ETYTK 324
              +        +    + YT+
Sbjct: 324 EEIVGRLLNHTPLSITGQRYTR 345


>gi|158317270|ref|YP_001509778.1| integrase family protein [Frankia sp. EAN1pec]
 gi|158112675|gb|ABW14872.1| integrase family protein [Frankia sp. EAN1pec]
          Length = 477

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 48/295 (16%), Positives = 95/295 (32%), Gaps = 37/295 (12%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE 124
            +  T+   + E+           ++  ++    +  I+   G     K+T   +R  V 
Sbjct: 147 AERRTVAVWLGEWLDIKEGDGTRASTLRAYRWLINMHIVPVIGRVQLDKLTPLDVRRLVA 206

Query: 125 SRKHTPSSA---IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
           S K +  SA       + +R     A R + VA N   +V+ P      +R    E+ ++
Sbjct: 207 SAKKSGLSAGSVRHVHSLIRNALAEAERLDLVARNVAKAVKAPPTPHREVRALRPEEARR 266

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT------- 234
                  G +    F   L  GLR  +        +  +  ++  ++T   +        
Sbjct: 267 LVEVL-RGERLEAVFACGLMLGLRRGEILGLRWSDVDLDGATLHVRQTLQRVDGSLMFVP 325

Query: 235 ---------VELPDGFMKLLA---MTPIGKET-----------FFINNDKQKMNATQFSI 271
                    + +P   + +L     T   + T            F ++    +     + 
Sbjct: 326 AKTERSHRRLPIPPKLVTILRRHRATQTAERTGLGDAWTETGLVFTSSIGTPLEPRNVNR 385

Query: 272 WFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTK 324
            F     +AG+     H +R   A++    G  A  +M   G  T+     TYT 
Sbjct: 386 RFDVLRRQAGLPWLRLHDLRHAFASMLFAEGVPARTVMELLGHSTIQLTMNTYTH 440


>gi|171913488|ref|ZP_02928958.1| integrase family protein [Verrucomicrobium spinosum DSM 4136]
          Length = 358

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 43/240 (17%), Positives = 100/240 (41%), Gaps = 12/240 (5%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES-RKHTPSSAIQFLTSMRVL 143
             L  ++    ++  + +++ +     R+IT + + + V++ +K  P +AI +L+  +  
Sbjct: 73  RELTESTLKFRKAAINHLVKFTQATTPRQITPRQVSAWVDALKKQNPETAINYLSVAQSW 132

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIR-PWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202
           F W  +   +  NP   V+ PK+ T+G +     E+ ++  +  +       A    L++
Sbjct: 133 FSWLQQGFKINSNPASQVKPPKKPTKGRKQFLRPEEARKLITAATGDRDLTFALYCALHA 192

Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQKTGTII-------TVELPDGFMKLLAMTPIGKETF 255
           GLR  +   A       +   +  Q T T +       T+ L   F + L      +E F
Sbjct: 193 GLRRKEVIEARPSWFDLDAGLLHVQATPTFVPKDKDNRTIPLTKEFREWLRKNYTMQEPF 252

Query: 256 FIN---NDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYG 312
            ++      +      F   ++    +AG++ + H +R+  A++    G + +++    G
Sbjct: 253 MLSPERTHGKSPYRYNFGRIYERLLERAGLSANFHDLRRTFASLHVSKGTSVYKVAQWLG 312


>gi|167766929|ref|ZP_02438982.1| hypothetical protein CLOSS21_01446 [Clostridium sp. SS2/1]
 gi|317499598|ref|ZP_07957861.1| phage integrase [Lachnospiraceae bacterium 5_1_63FAA]
 gi|167710904|gb|EDS21483.1| hypothetical protein CLOSS21_01446 [Clostridium sp. SS2/1]
 gi|316893147|gb|EFV15366.1| phage integrase [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 363

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 48/338 (14%), Positives = 104/338 (30%), Gaps = 38/338 (11%)

Query: 41  STFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD 100
             F   +  A+  +T  R  I           +LI E   +  + + +V       S  D
Sbjct: 26  PPFAKEFFRAIDSTTQVRTRIAYAYDLRVFFHFLIDE---NPAYRNYSVLDFKV--SDLD 80

Query: 101 QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
           +I     +     +         +  ++T     + ++++R  + +  +++ +  NP L 
Sbjct: 81  KIESVDLEEYMEYLKVYISEEQHKHMQNTEQGVFRKMSALRSFYGYFYKRQLIEKNPTLL 140

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEG----------------SQPRLAFEFLLYSGL 204
           V+ PK + + I     +++     F   G                 +       LL +G+
Sbjct: 141 VDMPKIREKEIIRLEADEVASLLDFVEHGGDHLTGQKRAYYEKTKERDLAIITLLLGTGI 200

Query: 205 RCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK---------- 252
           R S+     +  +   NN   +  +K    +TV   +     L     G           
Sbjct: 201 RVSELVGLNIDDVDFRNNGLHLI-RKGRKEMTVYFGNEVADALEQYIEGSRKLIIPKEGH 259

Query: 253 -ETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMA 309
            +  F +  ++++         K  A +       + H +R    T         + +  
Sbjct: 260 EDALFYSMQRRRIGVQAVQNLVKKYAKEVTPLKKITPHKLRSTYGTALYQETDDIYLVAE 319

Query: 310 TYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVVDSD 346
             G   V+   + Y   +D  R        +   V  D
Sbjct: 320 VLGHSDVNTTRKHYAAMSDTRRRQAAGKVVLRESVSHD 357


>gi|315607470|ref|ZP_07882465.1| mobilizable transposon [Prevotella buccae ATCC 33574]
 gi|315250653|gb|EFU30647.1| mobilizable transposon [Prevotella buccae ATCC 33574]
          Length = 418

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 70/208 (33%), Gaps = 10/208 (4%)

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           + ++A  + +  +   K A    Y+ I+    ++  + +       T +++ +  +   E
Sbjct: 199 SRNTASTYFSIFKAALKQAFIDGYLTIDLSAKIKGIQEQESRREYLTLDELNKLANTPCE 258

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI----FSIKTQKTGTIITVELPDGFMKL 244
               + A  F   +GLR  D  +     +             +KT  +  + + +   KL
Sbjct: 259 RDVLKRAALFSALTGLRHCDIQKLKWNEIAIEGNQAKLLFTQKKTKGVEYMPISEQAFKL 318

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302
                  ++  F         +       +A   KAG+ K  S H  R   AT+    G 
Sbjct: 319 CGEPRQPEQLVFEGLPNPSWISRPL----RAWIEKAGIQKHLSFHCFRHTFATLQLANGT 374

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIR 330
             + +    G   V   + Y K  D  +
Sbjct: 375 DIYTVSKMLGHTNVKTTQVYAKVVDEKK 402


>gi|309810355|ref|ZP_07704190.1| tyrosine recombinase XerD [Dermacoccus sp. Ellin185]
 gi|308435668|gb|EFP59465.1| tyrosine recombinase XerD [Dermacoccus sp. Ellin185]
          Length = 311

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 46/269 (17%), Positives = 88/269 (32%), Gaps = 31/269 (11%)

Query: 85  GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGVESRKHT--------PSSA 133
             L+ ++  ++     + +     SG      +    + + + S +           SSA
Sbjct: 25  RGLSPHTLAAYRRDVTRYLGYLAASGVTSLDGVEESRVEAFLRSLREGGQGHPPLAASSA 84

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG---- 189
            + L ++R L  + V  E  A +    V  P+   +  +     D+++  +   +G    
Sbjct: 85  ARALVAVRRLHAF-VSLETDAPDAATDVAPPRLPRKLPKAIPLADVERLLAAAGDGEDAG 143

Query: 190 -SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLL-- 245
             + R   E L   G R S+     V  +     S++   K      V L       L  
Sbjct: 144 SLRDRALLEVLYGVGARVSEVVGLDVDDVDLMSRSLRLFGKGSKERIVPLGRYAADALGS 203

Query: 246 ---------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSA 294
                    A         F+N    +++        +  A  AG++   S H +R   A
Sbjct: 204 YLTRERPALAAKGKAGAAVFLNQRGGRLSRQSVFGLVRRAAEVAGLDGEISPHTLRHSYA 263

Query: 295 TISADAGATAHELMATYGWKTVDQAETYT 323
           T   + GA    +    G  +V   + YT
Sbjct: 264 THLLEGGADVRVVQELLGHASVTTTQIYT 292


>gi|298529884|ref|ZP_07017286.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298531276|ref|ZP_07018676.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298508886|gb|EFI32792.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298509258|gb|EFI33162.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
          Length = 394

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 35/236 (14%), Positives = 81/236 (34%), Gaps = 20/236 (8%)

Query: 109 FDYRKITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWA-VRQEYVAINPCLSVERP- 164
            + + +   H+ + +  R  K+ P + I   + +R   ++  + ++ +  +    ++ P 
Sbjct: 144 MELKDLDVLHMDAFLAERNRKYAPETRIHERSGLRGFLRYLYLERQILKKDLSALIQGPP 203

Query: 165 -KRKTEGIRPWTKEDMQQFK----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-- 217
              ++   R  T E ++            G +           GLR  + CR  +  +  
Sbjct: 204 VYAQSRPPRFLTLEQIKTLFQSIDKDRPGGLRSYAMIHLAYSLGLRPGEICRVTLDDILF 263

Query: 218 QNNIFSIKTQKTGTIITVELPDGFMK-------LLAMTPIGKETFFINNDK--QKMNATQ 268
           ++ +  +  +K  +   + LP G ++              G      N       +    
Sbjct: 264 RDKLIYLPDRKNSSPAKLPLPQGALRALAAYLAWDRPMDPGHRFLLCNTRTPYGPLTPLT 323

Query: 269 FSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            S    A   +AG+  SA+ +R   A     A A+  E+    G   +  ++ Y  
Sbjct: 324 VSQNISACFRRAGIKGSAYWLRHTYAQNLLQAEASIFEIKEMLGHDIIKTSKRYLH 379


>gi|330970858|gb|EGH70924.1| site-specific recombinase, phage integrase family protein
           [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 351

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 48/289 (16%), Positives = 101/289 (34%), Gaps = 26/289 (8%)

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119
           YI     +  TL+  ++ Y  S    +  + ++    S   ++I   G +    ++ + I
Sbjct: 50  YIQRNGSERMTLEVALARYL-SDITPTKKLATQRGEISKDKKLIEHLGKYSLAALSAEII 108

Query: 120 RSGVESRKHTPSSAIQF--------LTSMRVLFKWAVRQEY---VAINPCLSVERPKRKT 168
            +  + R + P              L  +  L+  A+ QE+   +  NP L++ +P    
Sbjct: 109 ANYRDKRLNEPGRDGNINNNTVRLELALLSHLYTVAI-QEWGLGMTFNPMLNIRKPSPGG 167

Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQN--NIFSI 224
              R  + E+ +   +  +  S P L       L +G+R S+        +     +  +
Sbjct: 168 GRDRRLSPEEERDLLAAVNRHSNPMLGWIVRIALETGMRSSEISSLRRPQVDLAKRVIRL 227

Query: 225 KTQKTGTIITVELPDGFMKLLAMT------PIGKETFFINNDKQ--KMNATQFSIWFKAK 276
              K  +  TV L     +           PI     F     +  K     F+  +   
Sbjct: 228 SDTKNDSSRTVPLSKRATEAFQAAMNNPVRPIDCNLVFFGESGKDGKRRPYTFTKIWGQL 287

Query: 277 ATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             K  + +   H +R  + +   + G +  E+ A  G +++   + YT 
Sbjct: 288 KKKLDLPDFKFHDLRHEAVSRLVEGGLSDQEVSAISGHRSMQMLKRYTH 336


>gi|323153903|gb|EFZ40133.1| phage integrase family protein [Escherichia coli EPECa14]
          Length = 431

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 46/317 (14%), Positives = 99/317 (31%), Gaps = 64/317 (20%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK-ITTKHIRSGVESR-- 126
           T+K L  ++        +A  S  ++ +    I+   G+ +    I  + + +  +    
Sbjct: 85  TIKELAEKFLALKE-TEVAKTSLNTYRAVIKNILSIIGEKNLASSINKEKLLAVRKELLT 143

Query: 127 --------------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
                           +  +   ++T++  +F++ V   Y+A NP   +   K       
Sbjct: 144 GYQIPKSNYIVTQPGRSAVTVNNYMTNLYAVFQFGVDNGYLADNPFKGISPLKESRTIPD 203

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK----- 225
           P ++E+  +         Q +  +   +Y+G+R  + C  G + +   N    I+     
Sbjct: 204 PLSREEFIRLIDAC-RNQQAKNLWCVSVYTGIRPGELCALGWEDIDLKNGTMIIRRNLAK 262

Query: 226 --------TQKTGTIITV--ELPDGFMKLLAMTPIGKETFF------------------- 256
                      T  +I +     D     +A+T + KE                      
Sbjct: 263 DRFTVPKTQAGTNRVIHLIKPAIDALRSQMALTRLSKEHIIDVHLREFGRTEKQKCTFVF 322

Query: 257 -------INNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELM 308
                  + N             + A   +AG+ ++ ++  R   A  S  AGA    + 
Sbjct: 323 QPEVSAKVKNYGDHFTVDSIRQMWDAAVKRAGIRHRKSYQSRHTYACWSLTAGANPAFIA 382

Query: 309 ATYGWKTVDQA-ETYTK 324
              G        + Y K
Sbjct: 383 NQMGHADAQMVFQVYGK 399


>gi|317473155|ref|ZP_07932453.1| phage integrase [Anaerostipes sp. 3_2_56FAA]
 gi|316899379|gb|EFV21395.1| phage integrase [Anaerostipes sp. 3_2_56FAA]
          Length = 297

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 47/277 (16%), Positives = 87/277 (31%), Gaps = 31/277 (11%)

Query: 78  YRKSAHWGSL-----AVNSRISFESYFDQIIRKSGDFDYRKITT---KHIRSGVESRKHT 129
           Y  S  W SL     A ++  S+      I          +I     +     + S+   
Sbjct: 5   YDVSMKWFSLHELEIAESTAYSYSKNLRFINEYFHGKSIYEIDKNDIQDYVKFLYSKGCK 64

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAI--NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
             +   +   + + F +AV  E +    NPC  +  PK + + I P+++ +M++      
Sbjct: 65  TDTITNYFKLINMTFNYAVDYEILPKGANPCYKIVIPKTEKQEINPFSETEMEKILKVKC 124

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-----------------G 230
                   F     +G+R  +      + +  N   IK QKT                  
Sbjct: 125 LPWLYAGEF-IAYRTGMRKGEIYALRKKDIDFNGGFIKVQKTQSLTKNAKVILKEPKSKS 183

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFIN-NDKQKMNATQFSIWFKAKATKAGVNK-SAHG 288
           +   +      M  L       E+ F+  N+         S  F      A V + + H 
Sbjct: 184 SRRRIACDKILMNFLWNLSNRSESVFLFPNNDTFFVPWNISSAFTDVCEMAKVPRRTFHE 243

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
           +R   AT+          +    G  ++     TY+ 
Sbjct: 244 LRHTHATVLLSHNVHPKVVQERLGHASIQTTLNTYSH 280


>gi|298245891|ref|ZP_06969697.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
 gi|297553372|gb|EFH87237.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
          Length = 384

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 45/315 (14%), Positives = 96/315 (30%), Gaps = 39/315 (12%)

Query: 48  MSALTGSTPKREYINSPRKKPTT---LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR 104
             A+         +        T   L   + ++ ++ H G L V + ++++     +I 
Sbjct: 43  QEAIKKKNEALRELEMGILATGTRRRLGEYLEDWLENVHKGRLRVGTYVNYKKLIKYVIA 102

Query: 105 KSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV 161
             GD   +K+T +H+++    +     +          + V  + AVR      N C  V
Sbjct: 103 DLGDIWLQKLTPQHVQTFYSKKLNEGLSSKLINNIHGVLHVALENAVRWGLAPKNVCDLV 162

Query: 162 ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221
             P+  +  + P + E  + F     +     L     + +G+R  +        +    
Sbjct: 163 TPPRIVSREVVPLSVEQARWFVDRVKKHRLEVL-LVTAVVTGMRRGELLALRWPDIDFER 221

Query: 222 FSIK----------------TQKT-GTIITVELPDGFMKLLAMTPI-------------G 251
             +                   KT      + LP   + +L                   
Sbjct: 222 SRLLVLHSVDFIAGHGYVEGQPKTVAGRRVISLPSFLVDMLKQHRTLQQDARKSAKDWQD 281

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMAT 310
           ++  F N     ++       F+    +AG+     H +R  +A+I    G     +   
Sbjct: 282 RDLVFPNLKGGYLHPAHMGEKFRKILAEAGLPPIHFHDLRHSAASILLCMGVNIKVIQEL 341

Query: 311 YGWKTVDQA-ETYTK 324
            G   +     TY+ 
Sbjct: 342 LGHSDISITLRTYSH 356


>gi|218680623|ref|ZP_03528520.1| site-specific tyrosine recombinase XerD [Rhizobium etli CIAT 894]
          Length = 311

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 46/274 (16%), Positives = 83/274 (30%), Gaps = 34/274 (12%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTK-----HIRSGVESRKHTPSSAIQFLTS 139
              A N+  S+E   D +     +   R             + +  +   PSS  + L +
Sbjct: 20  RGAAANTLQSYERDLDDVSAFLKERGIRLTEAASADLAAYLASLARKGFKPSSQARRLAA 79

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEF- 198
           MR  +K+   +     +P   ++ PK+     +    E++ +  S     +Q     +  
Sbjct: 80  MRQFYKFLYAEGLRTDDPTGILDAPKKGRPLPKTMGVEEVGKLLSQAETEAQDAAPGQLQ 139

Query: 199 ----------LLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLA- 246
                     L  +G+R S+      + L     F +   K      V L    +  L  
Sbjct: 140 RLRMLALLELLYATGMRVSELVSLPARVLDQEGRFLMIRGKGNKERLVPLSQSAISALKS 199

Query: 247 ------------MTPIGKETFFINNDKQKM-NATQFSIWFKAKATKAGVN---KSAHGVR 290
                         P      F    K+       F+   K  A +AG+     S H +R
Sbjct: 200 YGRLLAAENAAVKDPQESPWLFPAASKEGYLPRQVFARDLKNLAIRAGLTPSMISPHVMR 259

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              A+     GA    +    G   +   + YT 
Sbjct: 260 HAFASHLLANGADLRVVQELLGHSDISTTQIYTH 293


>gi|218689499|ref|YP_002397711.1| putative defective integrase; Qin prophage [Escherichia coli ED1a]
 gi|218427063|emb|CAR07940.2| putative defective integrase; Qin prophage [Escherichia coli ED1a]
          Length = 431

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 46/317 (14%), Positives = 99/317 (31%), Gaps = 64/317 (20%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK-ITTKHIRSGVESR-- 126
           T+K L  ++        +A  S  ++ +    I+   G+ +    I  + + +  +    
Sbjct: 85  TIKELAEKFLALKE-TEVAKTSLNTYRAVIKNILSIIGEKNLASSINKEKLLAVRKELLT 143

Query: 127 --------------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
                           +  +   ++T++  +F++ V   Y+A NP   +   K       
Sbjct: 144 GYQIPKSNYIVTQPGRSAVTVNNYMTNLYAVFQFGVDNGYLADNPFKGISPLKESRTIPD 203

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK----- 225
           P ++E+  +         Q +  +   +Y+G+R  + C  G + +   N    I+     
Sbjct: 204 PLSREEFIRLIDAC-RNQQAKNLWCVSVYTGIRPGELCALGWEDIDLKNGTMIIRRNLAK 262

Query: 226 --------TQKTGTIITV--ELPDGFMKLLAMTPIGKETFF------------------- 256
                      T  +I +     D     +A+T + KE                      
Sbjct: 263 DRFTVPKTQAGTNRVIHLIKPAIDALRSQMALTRLSKEHIIDVHLREFGRTEKQKCTFVF 322

Query: 257 -------INNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELM 308
                  + N             + A   +AG+ ++ ++  R   A  S  AGA    + 
Sbjct: 323 QPEVSAKVKNYGDHFTVDSIRQMWDAAVKRAGIRHRKSYQSRHTYACWSLTAGANPAFIA 382

Query: 309 ATYGWKTVDQA-ETYTK 324
              G        + Y K
Sbjct: 383 NQMGHADAQMVFQVYGK 399


>gi|186471842|ref|YP_001863160.1| integrase family protein [Burkholderia phymatum STM815]
 gi|184198151|gb|ACC76114.1| integrase family protein [Burkholderia phymatum STM815]
          Length = 347

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 50/302 (16%), Positives = 99/302 (32%), Gaps = 25/302 (8%)

Query: 42  TFIPAYMSALTGSTPKREYINSPRKKP-TTLKWLISEYRKSAHWGSL-------AVNSRI 93
                +  A+         I      P TT++ LI+ Y +               + + +
Sbjct: 35  EEADQWAIAIETRIAGGAAIEGGDITPRTTVRDLIARYMREVSTTKKGSYAERNRLGTLL 94

Query: 94  SFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYV 153
              S FD+ I +    D   +    +R   +    +  + I+ L  +  +F+ A+++   
Sbjct: 95  DRYSVFDKTIVEFSSTDIEAVRDARMRGSKDHAPVSALTVIRDLGCLSGVFRHAIKKWKA 154

Query: 154 --AINPCLSVERPKRKTEGIRPWTKEDMQQFK--SFWSEGSQPRLAFEFLLY-------S 202
              +NPC  V+RP+           +DM++    S +  G+ P  A +++ +       +
Sbjct: 155 PFTVNPCKEVDRPRAPRGRSVRVRDDDMRKLLDWSGYVPGADPANARQWMAWSVLFALET 214

Query: 203 GLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINND 260
            +R  +  R     +        +   K      V L    + LL     GK      + 
Sbjct: 215 AMRRGEFMRMRWTDINRGERGVHLPDTKNDEARDVPLTKKALALLDSLTEGKP----EDR 270

Query: 261 KQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
              +    F   F       G+N   H  R  + T  A        L +  G + +   +
Sbjct: 271 VIGITYHTFGNAFYKCQKATGINVRIHDCRHEATTNLAKRVKDPLWLASITGHRDLRSLK 330

Query: 321 TY 322
            Y
Sbjct: 331 IY 332


>gi|323344390|ref|ZP_08084615.1| mobilizable transposon [Prevotella oralis ATCC 33269]
 gi|323094517|gb|EFZ37093.1| mobilizable transposon [Prevotella oralis ATCC 33269]
          Length = 418

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 70/208 (33%), Gaps = 10/208 (4%)

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           + ++A  + +  +   K A    Y+ I+    ++  + +       T +++ +  +   E
Sbjct: 199 SRNTASTYFSIFKAALKQAFIDGYLTIDLSAKIKGIQEQESRREYLTLDELNKLANTPCE 258

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI----FSIKTQKTGTIITVELPDGFMKL 244
               + A  F   +GLR  D  +     +             +KT  +  + + +   KL
Sbjct: 259 RDVLKRAALFSALTGLRHCDIQKLKWNEIAIEGNQAKLLFTQKKTKGVEYMPISEQAFKL 318

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302
                  ++  F         +       +A   KAG+ K  S H  R   AT+    G 
Sbjct: 319 CGEPRQPEQLVFEGLPNPSWISRPL----RAWIEKAGIQKHLSFHCFRHTFATLQLANGT 374

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIR 330
             + +    G   V   + Y K  D  +
Sbjct: 375 DIYTVSKMLGHTNVKTTQVYAKVVDEKK 402


>gi|254431901|ref|ZP_05045604.1| integron integrase [Cyanobium sp. PCC 7001]
 gi|197626354|gb|EDY38913.1| integron integrase [Cyanobium sp. PCC 7001]
          Length = 325

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 53/315 (16%), Positives = 99/315 (31%), Gaps = 59/315 (18%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK---- 127
             LI  YR+       A  +  ++E +  + +R       R++ +  + S +        
Sbjct: 10  AGLIQRYREELQTRHYARRTVKTYELWLRRFLRFHNLRHPREMGSAEVNSFLTHLAVDLQ 69

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            +PS+  Q L ++  L++  + ++         V R + +       ++ +++  +    
Sbjct: 70  VSPSTQNQALAALLFLYRELLDRDLELD----GVVRARNRRRLPVVLSEAEVRAVRDHLE 125

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLL 245
               P L    L  SGLR  ++ R  V+ L       S++  K G      LP   +  L
Sbjct: 126 --GDPALVVGLLYGSGLRLMEALRLRVKDLDFERRELSVRDGKGGKDRLTLLPQSLVADL 183

Query: 246 AMTPIGKETFFI---------------------------------------------NND 260
               +G                                                      
Sbjct: 184 KHHLLGVRRLHRLDLAAGWGQVLMPHALARKYPNAAREWAWQWVFPQEHRWHDRTSGTQG 243

Query: 261 KQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           +  ++ +      K   T AGV+K+A  H  R   AT   + G     +    G K V  
Sbjct: 244 RHHLDPSLVQKAVKRAVTAAGVSKAASCHTFRHSFATHLLERGQDIRTIQELLGHKDVST 303

Query: 319 AETYTKGADRIRLGI 333
              YT   +R  LG+
Sbjct: 304 TMIYTHVLNRGPLGV 318


>gi|126698818|ref|YP_001087715.1| putative tyrosine recombinase [Clostridium difficile 630]
 gi|254974757|ref|ZP_05271229.1| putative tyrosine recombinase [Clostridium difficile QCD-66c26]
 gi|255092146|ref|ZP_05321624.1| putative tyrosine recombinase [Clostridium difficile CIP 107932]
 gi|255306126|ref|ZP_05350298.1| putative tyrosine recombinase [Clostridium difficile ATCC 43255]
 gi|255313883|ref|ZP_05355466.1| putative tyrosine recombinase [Clostridium difficile QCD-76w55]
 gi|255516564|ref|ZP_05384240.1| putative tyrosine recombinase [Clostridium difficile QCD-97b34]
 gi|255649664|ref|ZP_05396566.1| putative tyrosine recombinase [Clostridium difficile QCD-37x79]
 gi|260682828|ref|YP_003214113.1| putative tyrosine recombinase [Clostridium difficile CD196]
 gi|260686426|ref|YP_003217559.1| putative tyrosine recombinase [Clostridium difficile R20291]
 gi|115250255|emb|CAJ68076.1| putative phage integrase site-specific recombinase XerD-like
           [Clostridium difficile]
 gi|260208991|emb|CBA62057.1| putative tyrosine recombinase [Clostridium difficile CD196]
 gi|260212442|emb|CBE03323.1| putative tyrosine recombinase [Clostridium difficile R20291]
          Length = 304

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 43/265 (16%), Positives = 100/265 (37%), Gaps = 21/265 (7%)

Query: 85  GSLAVNSRISF----ESYFDQIIRKSGDF-DYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
             L+ N+  S+    + Y + I +KS    D  +         +E    + ++  + ++S
Sbjct: 15  KKLSENTVASYFMDIKKYMEYINQKSIKLVDIVENDIISYLIKLEKDNVSIATIARMISS 74

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLA 195
           ++    +         NP   +++PK K E I   T+E++++  +F    +    + +  
Sbjct: 75  IKSFHDYLFLNHICTNNPAKDIKKPKIKKENINILTEEEIERLLNFPKLTTPKLIRDKAI 134

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ---KTGTIIT------VELPDGFMKLLA 246
           FE L  +G++ S+     ++ +  +I  I      K   +I       + L     +   
Sbjct: 135 FEVLYGTGIKVSELVEMNIEDIDLDIDYIYCNSCCKNQRVIPLCDITKLYLEKYLKEARP 194

Query: 247 MTPIGKE-TFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHG--VRKFSATISADAGAT 303
              +  E + F+++  Q+          K  +  A ++K+ +   +R   A    + GA 
Sbjct: 195 KMAVEGEKSLFVSSLGQRFTRQGLWKVIKKYSNLANIDKNINPTMLRHSFAIHLLNEGAN 254

Query: 304 AHELMATYGWKTVDQAETYTKGADR 328
              +    G   +   + Y    D+
Sbjct: 255 IAVVSKILGNVNLSSLQVYLNHIDK 279


>gi|114769433|ref|ZP_01447059.1| tyrosine recombinase [alpha proteobacterium HTCC2255]
 gi|114550350|gb|EAU53231.1| tyrosine recombinase [alpha proteobacterium HTCC2255]
          Length = 305

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 47/289 (16%), Positives = 90/289 (31%), Gaps = 29/289 (10%)

Query: 73  WLISEYRKS-AHWGSLAVNSRISFESYFDQII----RKSGDFD----YRKITTKHIRSGV 123
            L+  +  S +  G  A  +  ++       I    + +G         K++ K +RS +
Sbjct: 9   DLMENWLSSLSAVGGRAEKTIDAYRHDVSHFIHFLSQHNGKMPSKAILSKVSVKDMRSWI 68

Query: 124 ESRKHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
              + +   P S  + L++++  ++W  +   V+    LS   PK +    RP  K D +
Sbjct: 69  SHARRSGLSPRSLARALSAIKSFYRWMGQTYGVSTTAVLSTRTPKFEKPLPRPVKKSDAK 128

Query: 181 QFKSFWS-------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233
                           ++       L   GLR S++                  K     
Sbjct: 129 DLIKQIDLQSEHEWINARNVAVITLLYGCGLRISEALSITFDKTPLPEVLKIIGKGNKER 188

Query: 234 TVELPDGFMKL----LAMTPIG---KETFFINNDKQKMNATQFSIWFKAKATKAGVN--K 284
            V +           L   P      +  F       +N        +    + G+    
Sbjct: 189 IVPILPVAKAAVKNYLKCCPYSFLPNDRLFKGARGGPLNQRLIRKVMEQTRIQLGLPSTA 248

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           + H +R   AT   +AG     +    G  ++   + YT   D+ RL  
Sbjct: 249 TPHSMRHSFATHLLEAGGDLRVIQELLGHASLSSTQAYT-AVDQTRLMD 296


>gi|281426208|ref|ZP_06257121.1| mobilizable transposon, int protein [Prevotella oris F0302]
 gi|281399784|gb|EFB30615.1| mobilizable transposon, int protein [Prevotella oris F0302]
          Length = 418

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 70/208 (33%), Gaps = 10/208 (4%)

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           + ++A  + +  +   K A    Y+ I+    ++  + +       T +++ +  +   E
Sbjct: 199 SRNTASTYFSIFKAALKQAFIDGYLTIDLSAKIKGIQEQESRREYLTLDELNKLANTPCE 258

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI----FSIKTQKTGTIITVELPDGFMKL 244
               + A  F   +GLR  D  +     +             +KT  +  + + +   KL
Sbjct: 259 RDVLKRAALFSALTGLRHCDIQKLKWNEIAIEGNQAKLLFTQKKTKGVEYMPISEQAFKL 318

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302
                  ++  F         +       +A   KAG+ K  S H  R   AT+    G 
Sbjct: 319 CGEPRQPEQLVFEGLPNPSWISRPL----RAWIEKAGIQKHLSFHCFRHTFATLQLANGT 374

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIR 330
             + +    G   V   + Y K  D  +
Sbjct: 375 DIYTVSKMLGHTNVKTTQVYAKVVDEKK 402


>gi|265763422|ref|ZP_06091990.1| integrase [Bacteroides sp. 2_1_16]
 gi|263256030|gb|EEZ27376.1| integrase [Bacteroides sp. 2_1_16]
          Length = 372

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 83/232 (35%), Gaps = 12/232 (5%)

Query: 111 YRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170
           +R+      +     R  + +SA+ + ++ R   K   R + +  N    +E+ + +   
Sbjct: 138 FREYLLNAKQLRRPERPISRNSAVGYWSTFRGFLKILYRNKLIHSNVNDFLEKIEPEDVV 197

Query: 171 IRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-----QNNIFSIK 225
               + +++ +      +    + A  F   + LR SD      + +             
Sbjct: 198 KDYLSVDELYRLAETPCKIPVLKTASLFSCLTSLRISDILTLRWEEIVDFAAGGKCVHTV 257

Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284
           TQKT T   + + D  ++L+  +P      F    K+           K     AG+ K 
Sbjct: 258 TQKTKTEDIIPISDEALQLIGYSPEKTGLVF-KGLKRCWTQYP----MKEWIRAAGITKN 312

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335
            + H  R+  AT+ A AG     + +    K++   + Y K  D  +    N
Sbjct: 313 ITFHSYRRTFATLQAAAGTDIRTIQSIMAHKSITTTQRYMKVVDSNKRKASN 364


>gi|45766|emb|CAA33849.1| unnamed protein product [Plasmid R1033]
 gi|530804|gb|AAB59999.1| IntI1 integrase [Pseudomonas aeruginosa]
          Length = 337

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 42/306 (13%), Positives = 94/306 (30%), Gaps = 62/306 (20%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129
           ++ + R+   +   ++ +  ++ ++    IR  G      + +  + + +      RK +
Sbjct: 16  VLDQLRERIRYLHYSLRTEQAYVNWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75

Query: 130 PSSAIQFLTSMRVLFK--WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            S+  Q L ++   +         ++       + RP+         T +++ +   F  
Sbjct: 76  VSTHRQALAALLFFYGKVLCTDLPWLQ-----EIGRPRPSRRLPVVLTPDEVVRILGFL- 129

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
           EG   RL  + L  +G+R S+  +  V+     +    ++  K      + LP+     L
Sbjct: 130 EGEH-RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPTL 188

Query: 246 AMTPIGKETFFINN---------------------------------------------D 260
                    +++ +                                              
Sbjct: 189 REQLSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVR 248

Query: 261 KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           +  M    F   FK    +AG+ K  + H +R   AT    +G     +    G   V  
Sbjct: 249 RHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVST 308

Query: 319 AETYTK 324
              YT 
Sbjct: 309 TMIYTH 314


>gi|302345835|ref|YP_003814188.1| site-specific recombinase, phage integrase family [Prevotella
           melaninogenica ATCC 25845]
 gi|302149177|gb|ADK95439.1| site-specific recombinase, phage integrase family [Prevotella
           melaninogenica ATCC 25845]
          Length = 330

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 39/262 (14%), Positives = 91/262 (34%), Gaps = 15/262 (5%)

Query: 91  SRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----SRKHTPSSAIQFLTSMRVLFKW 146
           +   + S  +Q+ +K         TT+ IR+ +       K +  +           F W
Sbjct: 72  TIKYYGSTINQLFKKMPKK-VTNYTTEDIRAYLAVFQRKHKSSKVTIDNIRRIFSSFFSW 130

Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRC 206
              ++Y+  +P   + + K  T+     T E+++Q +   +   +     + L  +G+R 
Sbjct: 131 LEDEDYIIKSPVRRIHKVKTGTQIKEVLTDENLEQLRDNCTR-VRDLAMIDLLASTGMRV 189

Query: 207 SDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDG----FMKLLAMTPIGKETFFINNDK 261
            +  +   + +  N    I   K      V           + LA      +  F++  K
Sbjct: 190 GELVKLNREDINFNERECIVFGKGNKERIVYFNARAKIHLQQYLAERKDRNKALFVSLAK 249

Query: 262 QK--MNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
               +  +      +     + + +   H  R+  AT++ D G    ++    G   +D 
Sbjct: 250 PHNRLQISGVETRLRKIGRLSKIVRVHPHKFRRTLATMAIDKGMPVEQVQKLLGHVKIDT 309

Query: 319 AETYTKGADRIRLGIKNSRRIS 340
              Y    ++  + + + + IS
Sbjct: 310 TMHYA-MVNQTNVKLSHRKFIS 330


>gi|302387141|ref|YP_003822963.1| integrase family protein [Clostridium saccharolyticum WM1]
 gi|302197769|gb|ADL05340.1| integrase family protein [Clostridium saccharolyticum WM1]
          Length = 339

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 57/323 (17%), Positives = 104/323 (32%), Gaps = 45/323 (13%)

Query: 67  KPTTLKWLISEYRKS--AHWGSLAVNSRISF---ESYFDQIIRKSGDFDYRKITTKHIRS 121
           KPT    L++EY  S      +++ N+  S+        +  R   +    KI+ K I +
Sbjct: 2   KPTDFSKLLTEYLTSYLPSLKNVSKNTISSYCDTFRLLLKYCRDVHNLSIEKISMKDIDA 61

Query: 122 GV---------ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINP-----CLSVERPKRK 167
            +         E R    S+  Q L ++R  F++   Q     N       L++   K+ 
Sbjct: 62  DLVSQFMLWLEEERHCGISTRNQRLMAIRSFFRYV--QGEQPQNLLNCQKVLNIPPKKKS 119

Query: 168 TEGIRPWTKEDMQQFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223
              +   T E+M+   +       EG +       L  +G R  +     V++++    +
Sbjct: 120 LPVVTYLTVEEMKLLLAQPNTSTPEGRRDLALLCILYDTGGRVQEIADLTVRNIRLENPA 179

Query: 224 IK--TQKTGTIITVELPDGFMKLLA---------MTPIGKETFFINNDKQKMNATQFSIW 272
               T K      V L    ++LL                   F N    K+  +  S  
Sbjct: 180 KVHLTGKGRKSREVPLLPRTVQLLERYMIEHRLLAPEKQDHPLFCNRHNSKLTRSGISYI 239

Query: 273 FKAKATKAG-------VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
               A  A         + S H +R   A     AG     +    G  +VD  + Y   
Sbjct: 240 LNKYAELASSQSLTFPESISPHVLRHTKAMHLLQAGVNIIYIRDILGHASVDTTQIYASA 299

Query: 326 ADRIRLGIKNSRRISSVVDSDDP 348
             +++       ++      + P
Sbjct: 300 NTQMKRA--ALEKLGDSPAPEFP 320


>gi|294636124|ref|ZP_06714548.1| site-specific recombinase, phage integrase family [Edwardsiella
           tarda ATCC 23685]
 gi|291090569|gb|EFE23130.1| site-specific recombinase, phage integrase family [Edwardsiella
           tarda ATCC 23685]
          Length = 238

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 83/228 (36%), Gaps = 17/228 (7%)

Query: 109 FDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
                ITTK+I   +     K   ++A    + +  +FK A+   Y+ +NP  +   PK 
Sbjct: 1   MPLTAITTKNIADILNEYVNKQKSATAKMIRSELNDIFKEAIAAGYLTLNPVTNTRTPKC 60

Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
           K    R  +  D  +  +   E +           L +G R  D C    + +       
Sbjct: 61  KVHRSR-LSIGDYMKILAKADEITPTWFSAMLRVALITGQRQGDLCTVSWEDVTKTHIRF 119

Query: 225 KTQKTGTIITVELPD---GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281
             +KTG  I + L     G     A+ P GK + F+++ K   +       F+     A 
Sbjct: 120 TQEKTGAKIAIPLSLTMVGMQLADALPPHGKGSIFVSSTKSAPSPRTVRYQFQRARDAAN 179

Query: 282 VNK------SAHGVRKFSATISA-DAGATAHELMATYGWKTVDQAETY 322
           +        S H +R  SA + A + GA         G K++   + Y
Sbjct: 180 IEWGDKTPPSFHEIRSLSARLYAKERGADFA--KRLLGHKSMSTTDKY 225


>gi|86130954|ref|ZP_01049553.1| phage integrase family protein [Dokdonia donghaensis MED134]
 gi|85818365|gb|EAQ39525.1| phage integrase family protein [Dokdonia donghaensis MED134]
          Length = 357

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 41/267 (15%), Positives = 91/267 (34%), Gaps = 22/267 (8%)

Query: 83  HWGSLAVNSRISF--------ESYFDQIIRKSGDFDYR--KITTKHIRSGVESRKHTPS- 131
           ++   +      +         +  ++    +G+   +   IT   ++   +   H    
Sbjct: 83  NFFDFSEIYLKEYLKKDGRMIYAAVEKFREFTGNDKLKIIDITPDLMQRFYDFLIHKAGL 142

Query: 132 ---SAIQFLTSMRVLFKWAVRQEYVAINPCLSVE---RPKRKTEGIRPWTKEDMQQFKSF 185
              +   ++T  + L K A  +  +   P   +      K  T        ++++   + 
Sbjct: 143 SGETPHNYITRFKKLLKSAKNKGIIKEVPTADIRFSNPNKGDTLSKEVLDIDEIKVLYNT 202

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
           +      + AF F  Y+GL  ++  +    H++ N   I+  KT + I  EL    + LL
Sbjct: 203 YCGNDVVKRAFIFCCYTGLGLAEIRKLKWGHIKKNRLVIQRSKTDSKIDNELSKQTLSLL 262

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGAT 303
               +     F   D + ++ T  +   K    +A + K  + +  R   A +    GA 
Sbjct: 263 GKRKLNDNLVF---DLKGISDTAVNKNLKNWLRRADIEKKITFYCARHSFAVLLLLNGAN 319

Query: 304 AHELMATYGWKTVDQAETYTKGADRIR 330
              +    G  +      Y    DR++
Sbjct: 320 LKSVADAMGHSSTKTTLKYLNHVDRLK 346


>gi|238924762|ref|YP_002938278.1| site-specific recombinase, phage integrase family [Eubacterium
           rectale ATCC 33656]
 gi|238876437|gb|ACR76144.1| site-specific recombinase, phage integrase family [Eubacterium
           rectale ATCC 33656]
          Length = 336

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 38/264 (14%), Positives = 86/264 (32%), Gaps = 21/264 (7%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS----SAIQFLTSMRVL 143
           +  +   +      ++ ++ +   RKITT+ IR  +   +   +    +      ++   
Sbjct: 75  SERTIKYYRETVQHLLSQT-ETSVRKITTEEIREYLSDYQKLNNCSNVTIDNVRRNISSF 133

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203
           F W   ++Y+  +P   + + K KT      + E +++ +   +E  +     + L  +G
Sbjct: 134 FSWLEEEDYILKSPMRRIHKIKTKTVVKSVISDEGIEKLRDNCNE-KRDLAIIDLLYSTG 192

Query: 204 LRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDG----FMKLLAMTPIGKETFFIN 258
           +R  +     +  +       I   K      V             +       +  F+ 
Sbjct: 193 IRVGELVNLNIDDIDLEGRECIVYGKGDKERRVYFDAKAKVHLKDYIDTRTDKNKALFVT 252

Query: 259 NDKQK--MNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKT 315
            D     +  +   I  +    K  + +   H  R+  AT + D G    ++    G   
Sbjct: 253 LDAPHDRLKISGVEIRLRKLGRKLSLERVHPHKFRRSMATRAIDKGMPIEQVQKILGHSQ 312

Query: 316 VDQAETY-------TKGADRIRLG 332
           +D    Y        K A +  L 
Sbjct: 313 IDTTMQYAMVNQNNVKTAHQKYLA 336


>gi|257063564|ref|YP_003143236.1| site-specific recombinase XerD [Slackia heliotrinireducens DSM
           20476]
 gi|256791217|gb|ACV21887.1| site-specific recombinase XerD [Slackia heliotrinireducens DSM
           20476]
          Length = 460

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 46/429 (10%), Positives = 115/429 (26%), Gaps = 103/429 (24%)

Query: 14  ERTRHGKIIYYF----------------RKGHGRRIRLPYPHESTFIPAYMSALTGSTPK 57
           ++ R G++++                  R+   +  R+ Y         +   L      
Sbjct: 26  KKNRKGQLVWRVCLSFGYETVIDGNGNKRRKRNKVQRMCY-GSLGDARKFCKQLQAEYEN 84

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHWGS-LAVNSRISFESYFDQIIRKSGDFDYRKITT 116
            +     +    + +W   ++          +      + ++   +    GD    ++  
Sbjct: 85  IDQ----QAAQGSFRWACDKWLSWMRAKGGASQAVLRQYTTWLGYMSDVLGDKKLVEVKK 140

Query: 117 KHIRSGVESRKHTP----SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP-KRKTEGI 171
             + + + + K +     ++  +     + LF++ V  +++  NPC ++E P K +    
Sbjct: 141 SDVEAAMVAVKTSRDLSNTTMNKMFAVTKRLFEYCVDSDWITRNPCRNIEAPAKDRVTSR 200

Query: 172 RPWTKEDMQQFKSFWSEGSQPR--------------------------------LAFEFL 199
              T E+    +                                          +A   +
Sbjct: 201 HSLTDEESAVLRKRLDLAEADAISGYLEKENRQSDHNNLFGRSCVRGLSHISGIIAIRIM 260

Query: 200 LYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTI-------------ITVE-------- 236
           L +G+R  + C          N+   ++   T ++             + VE        
Sbjct: 261 LATGMRRGEVCGLTWGAVDFDNSQIYVRQSLTASVEVKDPKTYSGRRSLFVEQNTMRHLK 320

Query: 237 ---------LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF--------KAKATK 279
                    L        A+T   +     ++    ++ T  S W+        +     
Sbjct: 321 EWKTFQAKALHMVMPDGTALTQTDETPVCCSDVGGWLDPTNLSRWWGGNKNKGREGFRDS 380

Query: 280 AGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKG--ADRIRLGIKN 335
            G    + H +R   AT+    G     +    G        + Y     A+        
Sbjct: 381 LGFPELNMHELRHTQATMLLGNGIDVKSVQTRLGHSRASVTLDQYAHAIPANDKAAADLM 440

Query: 336 SRRISSVVD 344
              ++  V 
Sbjct: 441 GEIMNKSVP 449


>gi|120586881|ref|YP_961226.1| phage integrase family protein [Desulfovibrio vulgaris subsp.
           vulgaris DP4]
 gi|120564295|gb|ABM30038.1| phage integrase family protein [Desulfovibrio vulgaris DP4]
          Length = 343

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 41/263 (15%), Positives = 80/263 (30%), Gaps = 29/263 (11%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLF 144
           +  +   +        R   +     I   HI   + S     + P++    L  ++  F
Sbjct: 59  SPGTVRVYLPTLLAFFR-FAETPVTHIRVWHIEDWLNSLEQAAYKPATIATKLACIKSFF 117

Query: 145 KWAVRQEYVAINPCLSVERPKR--KTEGIRPWTKEDMQQFKSFWSEGSQPR--LAFEFLL 200
            +  +   + +NP   V+ PK      G R    E++Q+        +  R  L    L 
Sbjct: 118 GYLWKCGLLPLNPAAPVKGPKHIEGHHGDRVLLAEEVQELLEHTRRHAPARDHLMCRLLF 177

Query: 201 YSGLRCSDSCRAGV----QHLQNNIFSIKTQKTGTIITVELPDGFMKLL----------- 245
            +G R +++         + ++   ++    K      + +P      L           
Sbjct: 178 AAGARAAEAVSLRWGDLRRDVRGRWYATVMGKGRKTRHLHIPKDLAADLLVWKGALYSIE 237

Query: 246 ---AMTPIGKETFFINND--KQKMNATQFSIWFKAKATKA-GVNKSAHGVRKFSATISAD 299
                  +     F N     + +               A G   S H +R   AT S  
Sbjct: 238 PYQPAPGLDAVPLFPNRRVLTRPITVKTAYRIVTRWGEAALGRKISPHWLRHTFATHSRL 297

Query: 300 AGATAHELMATYGWKTVDQAETY 322
           AGAT  ++    G +++     Y
Sbjct: 298 AGATLEQIRVALGHESIQTTIRY 320


>gi|330950377|gb|EGH50637.1| phage integrase, putative [Pseudomonas syringae Cit 7]
          Length = 335

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 33/284 (11%), Positives = 88/284 (30%), Gaps = 29/284 (10%)

Query: 11  VTKERTRHGKIIY---YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK 67
           V ++R R    ++   Y+R  +G+ + L    +   +    + L       +        
Sbjct: 2   VRRKRPRKNGTVWVGYYYRDANGKELPLGGDLDKARLK--WAELEAKAKPDDLKI----- 54

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127
              +K +   Y +       A  ++   ++    + +         IT   +    ++R 
Sbjct: 55  ---MKGIFDRYERDII-PKKAARTQKDNKAELKHLRKGFETAPIDAITPSMVAQYRDART 110

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAI-NPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
              + A + +  +  ++  A    +    NPC  V + K K                   
Sbjct: 111 AK-TRANREIALLSHVYNMAREWGFTDRENPCAGVRKNKEKVRDYYA-NDMVWAAVYGQA 168

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL-----PDGF 241
            +  +   A +    +G R +D        ++ +  +++  KTG  + +++     P+  
Sbjct: 169 PQELKD--AMDLAYLTGQRPADVIAMNRSDIEGDYLNVQQGKTGKRLRIQMQNSGVPNSL 226

Query: 242 -----MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280
                  +L         F ++    +++       +      A
Sbjct: 227 GLLIGAIMLRNAKHVSHHFILSRTGMRVSQQMLRNRWDEAREAA 270


>gi|213692647|ref|YP_002323233.1| phage integrase family protein [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|213524108|gb|ACJ52855.1| phage integrase family protein [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|320458797|dbj|BAJ69418.1| phage integrase [Bifidobacterium longum subsp. infantis ATCC 15697]
          Length = 396

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 52/356 (14%), Positives = 109/356 (30%), Gaps = 50/356 (14%)

Query: 11  VTKERTRHGKIIYY--FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
           VT+ +T  G+  Y   +RK  G +              + +    +         P+   
Sbjct: 4   VTRYKTSKGETRYRVRYRKPDGTQTDKRGFKRKIDAENWAAKRVTTAKAEGTYIDPQAGK 63

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----- 123
            T+  L   +       +   + R    ++   +  + G+     +T +  +  V     
Sbjct: 64  ATVGELGPAWLAKKKLSTKPSHYRTLEGAWEKWVKPEWGNTPVSAVTRETTQQWVTGISQ 123

Query: 124 -----ESRK-----HTPSSAIQFLTS---MRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170
                + R        P SA   L +   +  +   A +   +  NP   +E P+++ + 
Sbjct: 124 GKTVKDERGNEIVLAKPRSASVVLRAHGVLAGILDDAKKDRRIPDNPARGIELPRKRRKK 183

Query: 171 IRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY-SGLRCSDSCRAGVQHLQ----------- 218
               T E + +        +  R     +L   G+R  +     V  +            
Sbjct: 184 HVYLTAEQLDRLAGSV---TPWRRDLVLVLGLCGMRWGELIPLRVMDVDLEKHRIYIGVS 240

Query: 219 ----NNIF---SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI 271
                 +      KT K   I+   + D  M+ L       +  F    ++ M   ++  
Sbjct: 241 APMVGGVIIPDDTKTYKARAIMYPVVLDPIMRRLCADRKPGDLLFEQPGREGMMIREWGN 300

Query: 272 ------WFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
                 W      +AG+    + H +R  +A++   AGA    +    G K+    
Sbjct: 301 ASRDDGWLSVGLRRAGIPGHLTIHDLRHTAASLMVRAGANVKAVQRQLGHKSAAMT 356


>gi|75674624|ref|YP_317045.1| site-specific tyrosine recombinase XerC [Nitrobacter winogradskyi
           Nb-255]
 gi|123773314|sp|Q3SVJ8|XERC_NITWN RecName: Full=Tyrosine recombinase xerC
 gi|74419494|gb|ABA03693.1| tyrosine recombinase XerC subunit [Nitrobacter winogradskyi Nb-255]
          Length = 321

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 43/311 (13%), Positives = 89/311 (28%), Gaps = 36/311 (11%)

Query: 55  TPKREYINSPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFD--------QIIRK 105
             + E +  P    + +   I  +         L+  +  ++                 +
Sbjct: 2   AKRAEPLPDPACAASDIGQQIVRWLTHLRAERRLSPKTLEAYARDVRQCLMFLGQHWSEQ 61

Query: 106 SGDFDYRKITTKHIRSGVESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162
                +  +    IRS + +R+       S ++ L  +R   ++  R+    +    ++ 
Sbjct: 62  VTLEGFVALEPADIRSFMAARRADDIGGRSLMRSLAGLRSFARFLEREGLGKVGALGAIR 121

Query: 163 RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR---------LAFEFLLYSGLRCSDSCRAG 213
            PK      +P      ++F        + R              L  SGLR S++    
Sbjct: 122 APKVGKSVPKPIHMSAAKRFADASERAGEDREPWIWARDAAVMALLYGSGLRISEALGLK 181

Query: 214 VQHL---QNNIFSIKTQKTGTIITVELPDGFMKLLA--------MTPIGKETFFINNDKQ 262
            + +         + T K      V +    + L+           P      F+     
Sbjct: 182 RRDVPPPGAGDVLVVTGKGNKTRMVPVLQNVLALIHEYVAMCPHSLPPEGP-IFVGARGG 240

Query: 263 KMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
            + A    +         G+    + H +R   AT     G     +    G  ++   +
Sbjct: 241 PLRARIIQLVMARMRGALGLPDSATPHALRHSFATHLLSRGGDLRAIQELLGHASLSTTQ 300

Query: 321 TYTKGADRIRL 331
            YT G D  RL
Sbjct: 301 IYT-GIDSERL 310


>gi|32472343|ref|NP_865337.1| integrase/recombinase Y4QK [Rhodopirellula baltica SH 1]
 gi|32443579|emb|CAD73021.1| putative integrase/recombinase Y4QK [Rhodopirellula baltica SH 1]
          Length = 348

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 43/296 (14%), Positives = 86/296 (29%), Gaps = 44/296 (14%)

Query: 64  PRKKPTTL--KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121
            +  P +   + L     +  H    A  +   +     Q+   +G     ++  +H+R 
Sbjct: 43  SQDAPGSHFPESLRLRLSEDLHLTGKAKRTHDGYIRAVRQLSDFAG-CSPDQVNEQHVRQ 101

Query: 122 GVESRKHTPSSAIQFLTS----MRVLFKWAVRQEYVAINPCLSVERPKRK--TEGIRPWT 175
                K+  + A   L      ++  F    ++++        ++  K +  T      T
Sbjct: 102 FFLHLKNDRNFAYGSLRVAFSGIKFFFTHTCKRDW------EIIKMLKLQNITTLPEVLT 155

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYS----GLRCSDSCRAGVQHLQ--NNIFSIKTQKT 229
              ++Q        +  R       ++    GLR +++    V  +        +   K 
Sbjct: 156 ---IEQVHELIGSATTQR--MFVYFWTVYSLGLRLNEALHLQVSDIDAERGWVHVHRGKG 210

Query: 230 GTIITVELPDGFMKLLAM--TPIGKETFFINNDKQ--------------KMNATQFSIWF 273
                V LP   ++LL          +F    D +               M+ T      
Sbjct: 211 AKDRYVPLPTTTVRLLRNYWASHRHPSFLFPADGRKHDLAKDGVSEATTPMSETAVQGAM 270

Query: 274 KAKATKA--GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           K        G   S H +R   AT   +AG     +    G  ++     Y    D
Sbjct: 271 KQITKNLRFGKKVSIHTLRHSYATHLLEAGVGLKVIQKYLGHSSLQTTMVYLHLTD 326


>gi|320663643|gb|EFX30917.1| putative defective integrase; Qin prophage [Escherichia coli
           O157:H7 str. LSU-61]
          Length = 431

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 46/317 (14%), Positives = 99/317 (31%), Gaps = 64/317 (20%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK-ITTKHIRSGVESR-- 126
           T+K L  ++        +A  S  ++ +    I+   G+ +    I  + + +  +    
Sbjct: 85  TIKELAEKFLALKE-TEVAKTSLNTYRAVIKNILSIIGEKNLASSINKEKLLAVRKELLT 143

Query: 127 --------------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
                           +  +   ++T++  +F++ V   Y+A NP   +   K       
Sbjct: 144 GYQIPKSNYIVTQPGRSAVTVNNYMTNLYAVFQFGVDNGYLADNPFKGISPLKESRTIPD 203

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK----- 225
           P ++E+  +         Q +  +   +Y+G+R  + C  G + +   N    I+     
Sbjct: 204 PLSREEFIRLIDAC-RNQQAKNLWCVSVYTGIRPGELCALGWEDIDLKNGTMIIRRNLAK 262

Query: 226 --------TQKTGTIITV--ELPDGFMKLLAMTPIGKETFF------------------- 256
                      T  +I +     D     +A+T + KE                      
Sbjct: 263 DRFTVPKTQAGTNRVIHLIKPAIDALRSQMALTRLSKEHIIDVHLREFGRTEKQKCTFVF 322

Query: 257 -------INNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELM 308
                  + N             + A   +AG+ ++ ++  R   A  S  AGA    + 
Sbjct: 323 QPEVSAKVKNYGDHFTVDSIRQMWDAAVKRAGIRHRKSYQSRHTYACWSLTAGANPAFIA 382

Query: 309 ATYGWKTVDQA-ETYTK 324
              G        + Y K
Sbjct: 383 NQMGHADAQMVFQVYGK 399


>gi|308174806|ref|YP_003921511.1| Tyrosine recombinase xerD [Bacillus amyloliquefaciens DSM 7]
 gi|307607670|emb|CBI44041.1| Tyrosine recombinase xerD [Bacillus amyloliquefaciens DSM 7]
 gi|328554760|gb|AEB25252.1| Tyrosine recombinase xerD [Bacillus amyloliquefaciens TA208]
          Length = 383

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 61/386 (15%), Positives = 116/386 (30%), Gaps = 65/386 (16%)

Query: 11  VTKERTRHGKIIYYF----------RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60
           +   +T  GK  Y+           R    +R          FI    SA+     K  Y
Sbjct: 4   IHPYKTSKGKQKYFVAYDVYDENGERHQKKKRGFDKKKDAKEFIAEVESAIN----KGMY 59

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHI 119
           I +P+    T+   +  + +     ++   +   +++   + I    GD     + T+HI
Sbjct: 60  IQTPKI---TVNDYLERWLEVKS-INIGSQTVTLYKNSLKNYIYPYIGDILLANLKTEHI 115

Query: 120 RSGV------ESRKHTPSSAIQFLT----SMRVLFKWAVRQEYVAINPCLSVERPKR-KT 168
            + +      +  K     A + +      +     + V  + +  N       PK  K 
Sbjct: 116 NNFIHALYTKDRGKGKIGYAYKTIKRSHEIVSAALDYGVDNKLIKTNVAKKAILPKEPKR 175

Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSI 224
           + I  W  E   QF     E  Q R  LA+   +  G+R  +      + +   +N+  +
Sbjct: 176 KRIDVWDLEQANQFLETSKEDEQNRYHLAYAIAIICGMRQGEILGLTWKDVDLEDNLLYV 235

Query: 225 KT-------------QKTGTIITVELPDGFMKLLAMTPI--------------GKETFFI 257
           +              +   +  T+E  +                          ++    
Sbjct: 236 EQTLSHDGKEILDDTKTKKSRRTIEFSESLADQFRQQKKIIESEKEKFGDDYQDQDLVIC 295

Query: 258 NNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTV 316
                 +NA            KAGV K + H +R   A++    G    E+    G    
Sbjct: 296 TELGNPINARNVLRKQAKLMKKAGVPKITFHDLRHVHASLMLYFGHDIKEISERLGHAKS 355

Query: 317 D-QAETYTKGAD--RIRLGIKNSRRI 339
               +TY       + +L     R I
Sbjct: 356 SFTYDTYVHIMSKTKKKLIDNLQRSI 381


>gi|257867216|ref|ZP_05646869.1| phage integrase [Enterococcus casseliflavus EC30]
 gi|257873551|ref|ZP_05653204.1| phage integrase [Enterococcus casseliflavus EC10]
 gi|257801272|gb|EEV30202.1| phage integrase [Enterococcus casseliflavus EC30]
 gi|257807715|gb|EEV36537.1| phage integrase [Enterococcus casseliflavus EC10]
          Length = 410

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 43/317 (13%), Positives = 102/317 (32%), Gaps = 51/317 (16%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           L+W   +Y+ +     +  ++ +      +  I+   G+    KI+  + +  V      
Sbjct: 72  LEWF-EQYKNT-----VKESTYVVQRVALNKHILPLFGERRISKISIPYCQKQVNHWYSY 125

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR------PWTKEDMQQFK 183
                  +     +F++A     +  NP   V RPKR+ +          +TK ++  F 
Sbjct: 126 YKKYSNLIGMTNSIFQYAKSLRLIRRNPMEGVIRPKRQKQIDEEKYTAPFYTKAEVLYFL 185

Query: 184 SFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ------------- 227
               +   P    F  L ++GLR  +      + +       S+K               
Sbjct: 186 QIAKKYPDPLYPMFHILTFTGLRKGELLALRWKDIDFKRGTLSVKQTLTTVEDWKLAFQT 245

Query: 228 -KT-GTIITVELPDG----------------FMKLLAMTPIGKETFFINNDKQKMNATQF 269
            KT  ++ T+ + +                           G +  F   + +       
Sbjct: 246 PKTEKSLRTISIDNQTLSIFRQCILKQKAFFLKTGRKPVENGAQLLFTTEENKPYYLDFL 305

Query: 270 SIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGAD 327
           +        +  +   + HG R    ++  ++GA+  E+    G   V    + Y   ++
Sbjct: 306 NHNLTKILKENKLKHMTVHGFRHTHCSLLFESGASIKEVQVRLGHTDVRTTMDIYAHVSE 365

Query: 328 RIRLGIKNSRRISSVVD 344
           + +   + + R +  ++
Sbjct: 366 QKK--EETADRFADYMN 380


>gi|255655227|ref|ZP_05400636.1| putative tyrosine recombinase [Clostridium difficile QCD-23m63]
 gi|296451212|ref|ZP_06892953.1| tyrosine recombinase XerD [Clostridium difficile NAP08]
 gi|296880435|ref|ZP_06904398.1| tyrosine recombinase XerD [Clostridium difficile NAP07]
 gi|296260033|gb|EFH06887.1| tyrosine recombinase XerD [Clostridium difficile NAP08]
 gi|296428676|gb|EFH14560.1| tyrosine recombinase XerD [Clostridium difficile NAP07]
          Length = 304

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 42/265 (15%), Positives = 99/265 (37%), Gaps = 21/265 (7%)

Query: 85  GSLAVNSRISF----ESYFDQIIRKSGDF-DYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
             L+ N+  S+    + Y + I +KS    D  +         +E    + ++  + ++S
Sbjct: 15  KKLSENTVASYFMDIKKYMEYINQKSIKLIDIVENDIISYLIKLEKDNVSIATIARMISS 74

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLA 195
           ++    +         NP   +++PK K E I   T+E++++  +F    +    + +  
Sbjct: 75  IKSFHDYLFLNHICTNNPAKDIKKPKIKKENINILTEEEIERLLNFPKLTTPKLIRDKAI 134

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSI---------KTQKTGTIITVELPDGFMKLLA 246
           FE L  +G++ S+     ++ +  +I  I         +      I  + L     +   
Sbjct: 135 FEVLYGTGIKVSELVEMNIEDIDLDIDYIYCNSCCKSQRVIPLCDITKLYLEKYLKEARP 194

Query: 247 MTPIGKE-TFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHG--VRKFSATISADAGAT 303
              +  E + F+++  Q+          K  +  A ++K+ +   +R   A    + GA 
Sbjct: 195 KMAVEGEKSLFVSSLGQRFTRQGLWKVIKKYSNLANIDKNINPTMLRHSFAIHLLNEGAN 254

Query: 304 AHELMATYGWKTVDQAETYTKGADR 328
              +    G   +   + Y    D+
Sbjct: 255 IAVVSKILGNVNLSSLQVYLNHIDK 279


>gi|229126350|ref|ZP_04255367.1| DNA integration/recombination/invertion protein [Bacillus cereus
           BDRD-Cer4]
 gi|228657121|gb|EEL12942.1| DNA integration/recombination/invertion protein [Bacillus cereus
           BDRD-Cer4]
          Length = 347

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 39/267 (14%), Positives = 84/267 (31%), Gaps = 36/267 (13%)

Query: 93  ISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFLTSMRVLFKWAV 148
              + Y + +II   G+    K+T+ H+++ V S +       +  + +  +R   + A+
Sbjct: 65  KVLKGYLNSRIIPSLGNIKLAKLTSLHMQNYVNSLRDEGLKRGTIEKIIKLIRNSLENAI 124

Query: 149 RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD 208
             E +  N    ++  K   E +  W ++++Q F     + S+  + F   L +G+R  +
Sbjct: 125 DLELITKNVAAKIKLSKADKEELTVWNEQEVQLFLKAAQD-SRYYIVFHMALVTGMRQGE 183

Query: 209 SCRAGVQHLQNNIFSIK--------------TQKTGTIITVELPDG-------------F 241
                 + +      +                 KT + +   L                 
Sbjct: 184 LLGLRWKDVDLEKGHLTISQTLSHDGKTFLVGGKTKSSLRKILLPASTVAKLKKHGVVVL 243

Query: 242 MKLLAMTP--IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISA 298
            + L+        +          +N         A    A V K   H +    AT+  
Sbjct: 244 KEKLSQGEEYHDNDLVMCTPSGTSINPANVRRSLNALIQNAAVPKIRFHDLHHTHATLLM 303

Query: 299 DAGATAHELMATYGWKTVDQA-ETYTK 324
             G     +    G   +    +TY+ 
Sbjct: 304 AKGVDVKVISERLGHSNIKITLDTYSH 330


>gi|254512300|ref|ZP_05124367.1| tyrosine recombinase XerC [Rhodobacteraceae bacterium KLH11]
 gi|221536011|gb|EEE38999.1| tyrosine recombinase XerC [Rhodobacteraceae bacterium KLH11]
          Length = 306

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 41/274 (14%), Positives = 89/274 (32%), Gaps = 28/274 (10%)

Query: 85  GSLAVNSRISFESYFDQI--------IRKSGDFDYRKITTKHIRSGVESRKHT---PSSA 133
              + N++ ++     +           + G     +IT   +R+ +  ++++     S 
Sbjct: 23  AGRSENTQNAYRGDVTEFLSFMTLHHSERQGLAALERITVSDMRAWMADQRNSDVSARSL 82

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----- 188
            + L++++  ++W   +E       LS   PK   +  RP  ++  +             
Sbjct: 83  ARKLSAVKSFYRWLAEREGFEPTAVLSTRAPKFTKKLPRPLAEDAARAMIETVELQSASD 142

Query: 189 --GSQPRLAFEFLLYSGLRCSDSCRA-GVQHLQNNIFSIKTQKTGTIITVELP------D 239
              ++       L   GLR S++    G      +   I  +     +   +P      D
Sbjct: 143 WVAARDVAVVTLLYGCGLRISEALSLTGADAPLPDTLRILGKGEKERVVPVIPAARSAVD 202

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATIS 297
            +++L           F       +N +           + G+  +A  H +R   AT  
Sbjct: 203 RYLRLCPHPQSPDAALFRGVRGGALNPSAIQGVMAKARMQLGLPATATPHAMRHSFATHL 262

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
             AG     +    G  ++   + YT   D  RL
Sbjct: 263 LSAGGDLRAIQELLGHASLSTTQAYT-AVDTARL 295


>gi|91069971|gb|ABE10899.1| putative site-specific integrase/recombinase [uncultured
           Prochlorococcus marinus clone ASNC2259]
          Length = 321

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 53/312 (16%), Positives = 96/312 (30%), Gaps = 25/312 (8%)

Query: 31  RRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHW-GSLAV 89
           RR     P   TF+   ++       + +     +  P TL   I++Y          A 
Sbjct: 16  RRKNYVGPRSRTFLSRDLAQSWADAVEEKTKKVFKDIPFTLGEAINDYINGPLLLHRSAE 75

Query: 90  NSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWA 147
           N +       +      GD     +  KH     + R  K  P++ ++ L  +RVL  WA
Sbjct: 76  NEKYPLRVTAESW---LGDIPLSDLQIKHFAVWRDERLLKVKPNTVMRELRILRVLIDWA 132

Query: 148 VRQE--YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS-QPRLAFE-FLLYSG 203
             +    +  NP   +            +T +D Q+     S+ S +  L      L +G
Sbjct: 133 RDERGAEIKDNPARHLRVRGTGDARAPFFTDQDEQRLLFELSQMSNKNHLRLTKLALATG 192

Query: 204 LRCSDSCRAGVQHLQ-NNIFSIKTQKT-------GTIITVELPDGFMKLLAMTPIGKETF 255
            R S+      +++  N       +K             + LP    K+L          
Sbjct: 193 FRRSELLSLTWRNIDLNKKLLYIHRKNCAATDNYSAPRLIPLPGKAKKILEELSERHGKI 252

Query: 256 FINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWK 314
                    +       F     +A +     H +R    +    +G  A E+ A  G +
Sbjct: 253 IELTKGAARHG------FDKARKRADLETLRFHDLRHIGISRMWSSGMNALEISACSGHR 306

Query: 315 TVDQAETYTKGA 326
            +     Y+   
Sbjct: 307 DIKMLMRYSHYQ 318


>gi|1403511|emb|CAA67039.1| integrase [Pseudomonas aeruginosa]
          Length = 336

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 42/306 (13%), Positives = 93/306 (30%), Gaps = 62/306 (20%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129
           ++ + R+   +   ++ +  ++  +    IR  G      + +  + + +      RK +
Sbjct: 16  VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75

Query: 130 PSSAIQFLTSMRVLFK--WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            S+  Q L ++   +         ++       + RP+         T +++ +   F  
Sbjct: 76  VSTHRQALAALLFFYGKVLCTDLPWLQ-----EIGRPRPSRRLPVVLTPDEVVRILGFL- 129

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
           EG   RL  + L  +G+R S+  +  V+     +    ++  K      + LP+     L
Sbjct: 130 EGEH-RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPTL 188

Query: 246 AMTPIGKETFFINN---------------------------------------------D 260
                    +++ +                                              
Sbjct: 189 REQLSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVR 248

Query: 261 KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           +  M    F   FK    +AG+ K  + H +R   AT    +G     +    G   V  
Sbjct: 249 RHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVST 308

Query: 319 AETYTK 324
              YT 
Sbjct: 309 TMIYTH 314


>gi|296160164|ref|ZP_06842983.1| integrase family protein [Burkholderia sp. Ch1-1]
 gi|295889638|gb|EFG69437.1| integrase family protein [Burkholderia sp. Ch1-1]
          Length = 345

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 53/327 (16%), Positives = 95/327 (29%), Gaps = 23/327 (7%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT-TLKW 73
           R R G  +++         RL     +               +   +    ++P    + 
Sbjct: 4   RKRKGSDVWHIDIRTPGGGRLRQTTGTADKKEAQELHDKLKHEAWRVAKMGERPRYVFEQ 63

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV--------ES 125
             + Y       +          ++    +      D   IT   I + +          
Sbjct: 64  AAARYLTEQSNKADYD----DRAAHIRHFLTHFAGRDLGSITRPEIMAAIPTESPKKHRK 119

Query: 126 RKHTPSSAIQFLTSMRVLF-KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
               P++  ++L ++R L    A   E++   P L        T  +R  T+++ ++   
Sbjct: 120 TPLKPATRNRYLATIRALLLDAAKDWEWIDRAPSL--PEFPEPTIRVRWITRDEAKRLLR 177

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----NNIFSIKTQKTGTIITVELPDG 240
              E +  R    F   +GLR  +        +              K    I V L D 
Sbjct: 178 ALDE-TCMRDITAFCFATGLRQRNILELEWSQVDLVSRRAWIHPDQAKARKPIGVPLNDE 236

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISAD 299
            + LL       ETF    D + +       W ++    A + N   H VR   A+    
Sbjct: 237 AIALLRKQIGQHETFVFVRDGKPLKKWDDWKW-RSACRLANISNFRFHDVRHTWASWHVQ 295

Query: 300 AGATAHELMATYGWKTVDQAETYTKGA 326
            G     L    GW T +    Y   A
Sbjct: 296 NGTPLQVLKELGGWATFEMVLRYAHLA 322


>gi|228969782|ref|ZP_04130546.1| Integrase/recombinase [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228789934|gb|EEM37752.1| Integrase/recombinase [Bacillus thuringiensis serovar sotto str.
           T04001]
          Length = 304

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 40/290 (13%), Positives = 90/290 (31%), Gaps = 39/290 (13%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESRKHT 129
           ++ +YR        + N+ IS+ +      ++ G             K  R  +  +K  
Sbjct: 1   MLHKYRNYLIDKGKSRNTVISYINDLQVFFQEMGVNPDSYVISNDIKKWTRDMLNPKKGK 60

Query: 130 P---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP---WTKEDMQQFK 183
               S+  + L ++R  F WA R+ Y+ +NP   ++  K   E        T+++ ++  
Sbjct: 61  ALSVSTINRRLNTLRSYFSWAERENYIRVNPMTDIKDLKMVDEEHEKIMWLTEKEFEELL 120

Query: 184 SF-------------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
                            +  + R+    L Y+GLR  +     +  +  ++  I+    G
Sbjct: 121 ERMRKYPIKTRGVNAEEKYRRDRVIIYILTYAGLRVEELSNLKITDIDLDVKKIRVVGKG 180

Query: 231 TII-TVELPDGFMKLL------------AMTPIGKETFFI-NNDKQKMNATQFSIWFKAK 276
             + T+ + +     +                +    F + +    K +        +  
Sbjct: 181 NKVRTIPMSNFLYNEILEWLQFRSKVSNEKEIVSHSPFLLYSQRSGKFSIRGIQNMIENY 240

Query: 277 ATKAGVNKSAHGVRKFSATISADA-GATAHELMATYGWKTVDQAETYTKG 325
           +T      + H  R         A      ++    G   +     Y K 
Sbjct: 241 STPDK-KLTPHMFRHTFCKWMLKATNNDIEKVRRLAGHSHISTTTRYLKS 289


>gi|86139634|ref|ZP_01058202.1| integrase/recombinase [Roseobacter sp. MED193]
 gi|85823817|gb|EAQ44024.1| integrase/recombinase [Roseobacter sp. MED193]
          Length = 306

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 46/273 (16%), Positives = 90/273 (32%), Gaps = 18/273 (6%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFLTSMR 141
             +   ++ S            G       T + +R+          TPS+    + ++R
Sbjct: 31  RGMGEKAQKSHIRAIKDFAAFLGRPPDTA-TPEDLRAYQLHMTDSGVTPSTFNVRIVALR 89

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM-QQFKSFWSEGSQPRLAFEFLL 200
             F     +E +       ++      +    ++ E++     +    G + R A     
Sbjct: 90  FFFSMTCGREEMKR----YMQFRTEPRKLPVVFSVEEVSDILMAAPGPGLKYRAALSISY 145

Query: 201 YSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLLAMTPIGKET---F 255
            +GLR S+ C   +  + ++     ++  K      V L  G ++LL             
Sbjct: 146 GAGLRASEVCNLKISDIDSDRMLIHVELGKGQKDRKVMLSPGLLELLRAWWREARPEGWL 205

Query: 256 FINNDK-QKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYG 312
           F    K   ++  Q S  F +    AGV K  + H +R   AT   +A      +    G
Sbjct: 206 FPGKPKINPISPRQLSRAFTSAKHMAGVKKPATLHTLRHSFATHLLEANTDVRVIQVLLG 265

Query: 313 WKTVDQAETYTKGADR-IRLGIKNSRRISSVVD 344
              +     YT  A + IR  +     ++ + D
Sbjct: 266 HAKLTTTARYTHVATKTIRDTVSPYEMLAKLQD 298


>gi|237717514|ref|ZP_04547995.1| phage integrase [Bacteroides sp. 2_2_4]
 gi|229453183|gb|EEO58974.1| phage integrase [Bacteroides sp. 2_2_4]
          Length = 407

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 45/293 (15%), Positives = 91/293 (31%), Gaps = 26/293 (8%)

Query: 58  REYINSPRKKPTTLKWL-ISEYRKSAHWGSLAVNSRISFESYFDQ----IIRKSGDFDYR 112
           +E    P     ++  + I+EY     +   +                 I +++ +    
Sbjct: 91  KELHMLPESGSPSISDIRINEYLNHLAYRRYSHAYIKGRRYILTYFYKIIEKENQEHPLT 150

Query: 113 KITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
                         +   ++  ++L  +RV  ++AV + +   +   ++  PK  +E   
Sbjct: 151 LEDIDKYIEYYTINQVQRNTLKEYLCCIRVYLRYAVEKGWCIADLDKALITPKVYSEENL 210

Query: 173 P--WTKEDMQQFKSFWSE-----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFS 223
           P     + +Q+      E      S+    F  L   GLRCS+     +  +        
Sbjct: 211 PSFLPWDKVQKLLQTVKEQTGKSASRDYAIFMLLAMYGLRCSEVANLKLSDIDWRKEQIY 270

Query: 224 IKTQKTGTIITVELP--------DGFMKLLAMTPIGKETFFIN-NDKQKMNATQFSIWFK 274
           IK  K      + L         D               FF      + ++    +    
Sbjct: 271 IKRAKNCRPQILPLLHNVGEAIIDYLKNGRPNEVDSDSLFFCAPAPIRPISCNAIASVVY 330

Query: 275 AKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
                +G+N   K  H +R   AT   + G T  ++    G K+++    Y K
Sbjct: 331 RYLKYSGINIKHKGPHSLRHSHATFLINEGQTLKDVGDLLGHKSMEATRVYAK 383


>gi|291295791|ref|YP_003507189.1| integrase family protein [Meiothermus ruber DSM 1279]
 gi|290470750|gb|ADD28169.1| integrase family protein [Meiothermus ruber DSM 1279]
          Length = 374

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 47/274 (17%), Positives = 94/274 (34%), Gaps = 30/274 (10%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSSAIQFLTSMRVL 143
             L  ++  ++ +Y  Q+++        +++   IR+        +PS+       +R  
Sbjct: 84  KGLRPSTVQNYRNY-QQLLKPLAATPLTRLSPLAIRARFAELAELSPSTRRHLYQFLRAA 142

Query: 144 FKWAVRQEYVAINPCLSVERPKRKT-EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202
            + AVR   +  NP  +V+ P   T    R W +E +  F +  ++G +    F  +L +
Sbjct: 143 LRDAVRVGLLEANPMDAVDPPTGGTVRPPRAWNREQVSAFLA-AAQGHRLYPMFYVMLTT 201

Query: 203 GLRCSDSCRAGVQHLQNNIFSIK----------TQKT-GTIITVEL----------PDGF 241
           GLR  ++     Q  Q     I+            KT G+   + L              
Sbjct: 202 GLRIGEAMALRWQDWQGEKLWIRHTLTKQRTLGPTKTLGSSAPIYLDLATQTILSEHRTR 261

Query: 242 MKLLAMTPI---GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATIS 297
                 T       +  F +     ++       F+A   +A V +   HG+R    +++
Sbjct: 262 QAEERATAKRWLDHDLIFPSEVGTPLSYRNVMRTFQALTEQAKVPRIGLHGLRHTYTSMA 321

Query: 298 ADAGATAHELMATYGWKTVD-QAETYTKGADRIR 330
             AG +  ++      K        Y    +  R
Sbjct: 322 LQAGLSPKQVADRLRHKDPALTLRIYQHLQEEDR 355


>gi|298206637|ref|YP_003714816.1| putative tyrosine recombinase [Croceibacter atlanticus HTCC2559]
 gi|83849267|gb|EAP87135.1| putative tyrosine recombinase [Croceibacter atlanticus HTCC2559]
          Length = 265

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 35/256 (13%), Positives = 81/256 (31%), Gaps = 18/256 (7%)

Query: 85  GSLAVNSRISF----ESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSM 140
             LA N+   +      +   +  K  D        +     +       +   Q +  +
Sbjct: 4   KRLAQNTIDIYTEVTRIFLRYLSLKQADEITNIWVQRFNYDYIIGNGFGVAYQNQCINGI 63

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200
           +    +  +   +       + RPK+  +     +KE++ Q  +  +   + +     L 
Sbjct: 64  KKFVSFLGKPLVLDT-----LVRPKKPQKLPVVLSKEEISQLFNVIN-NLKHKALLALLY 117

Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLA---MTPIGKETF 255
            +GLR  ++ +   + + +    I+    K        L + F+ LL         K   
Sbjct: 118 SAGLRIGEALQLTPEAIDSKRMLIRIEQAKGNKDRYTLLSESFLTLLRMYYKKYKPKTYL 177

Query: 256 FINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATISADAGATAHELMATYG 312
           F   +     ++      K     AG+ +   + H +R   AT   ++G     +    G
Sbjct: 178 FEGQNGGAYTSSSAQKVLKRALRDAGITRIGVTLHTLRHSFATHLLESGTDLRYIQELLG 237

Query: 313 WKTVDQAETYTKGADR 328
             +      YT  + +
Sbjct: 238 HNSPKTTMIYTHVSSK 253


>gi|295110839|emb|CBL24792.1| Site-specific recombinase XerD [Ruminococcus obeum A2-162]
          Length = 411

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 52/349 (14%), Positives = 97/349 (27%), Gaps = 75/349 (21%)

Query: 66  KKPTTLKWLISEY--RKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSG 122
               T+ ++   Y   KS    +L   ++ ++   +D+ I    G  +  +I    +   
Sbjct: 68  AGKATVNFVFDRYMSLKS----NLKPTTKSNYLYMYDRFIRDTFGKRNIAEIKYSDVVQF 123

Query: 123 VESRKHTPSSAIQFLTSMRVL----FKWAVRQEYVAINPCLSV-----ERPKRKTEGIRP 173
                      I  L ++  L    F+ AVR + +  NP   V     +    KT     
Sbjct: 124 YNHLIEKQELQINTLETVHTLLHPTFQLAVRDDIIRKNPTDGVMAELKKNLGMKTGVRHA 183

Query: 174 WTKEDMQQFKSF---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIF------- 222
            T    + F  +             F   L +G R  +      + +             
Sbjct: 184 LTIPQQRAFMEYIATHPIYYHWWPIFTVFLGTGCRIGEVLGLRWEDINYEKRIISINHNL 243

Query: 223 -------------SIKTQKTGTII-TVELPDGFMKLLAM------------TPIGKET-- 254
                         I T KT   + T+ + D       M              I   T  
Sbjct: 244 TYYPVGEDRASENHIATPKTEAGMRTIPMLDTVKDAFEMIWEEQKENGWTDAEIDGMTGF 303

Query: 255 FFINNDKQKMNATQFSIWFKA--------KATKAGVNK---------SAHGVRKFSATIS 297
            F N     MNA   +   K         +  +A             SAH +R    T  
Sbjct: 304 VFCNRYGNVMNAQSVNRAIKRISSAYNATEEIEAKKEHREPVLLPNFSAHSLRHTFCTRL 363

Query: 298 ADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVVDS 345
            +       + +  G K +    + Y +  +  +   +    +++ +D 
Sbjct: 364 CERETNLKVIQSIMGHKDIQTTMDIYAEATEEKK--QETFEHLAATMDV 410


>gi|237803677|ref|ZP_04591262.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. oryzae str. 1_6]
 gi|331025659|gb|EGI05715.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. oryzae str. 1_6]
          Length = 367

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 55/349 (15%), Positives = 108/349 (30%), Gaps = 39/349 (11%)

Query: 7   LPPFVTKERT-RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
           LPP + ++   R+G   Y +R     R+      +        +A   +   +  +    
Sbjct: 13  LPPNLYRKTDKRNGHTYYTYRDPVTGRMF-GLGKDKAAAIMEAAAANHADVLKPTLAQRI 71

Query: 66  KKP-----TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
            +P      T    + EY        L+ ++  S +S    I    G+   R I T  I 
Sbjct: 72  AEPVAVDDRTFADWLGEYDLIYTERGLSAHTTRSIKSRLKVINNAFGEKYMRSIRTMDIA 131

Query: 121 SGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
           + + +  +      +    + +R +F  A+   +  +NP  + +  + K +  R  + E 
Sbjct: 132 TFLATFTKAGKAPMSKALRSLLRDVFTEAIAAGWCDLNPVDATKAARSKVKRGR-LSLEL 190

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
            +   +        R A E  L +G R  D      +   +    +   KTG  + +   
Sbjct: 191 WKAAHAATDRPWLKR-AMELALLTGQRRDDIGSMLFKDEHDGFLHVIQSKTGARLRISTS 249

Query: 239 DGFMK----------------LLAMTPIGKETFFINNDKQKMNATQFSIWFKAK----AT 278
                                L         T  +      +     ++ F       A 
Sbjct: 250 LRLEAIDLDLSNVIKMCRDRVLSKHLVHHARTVAVAKAGSPVKLNTLTLAFAEARDKGAA 309

Query: 279 KAGVNK-----SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
             G++      S H +R  +A + A  G    +L    G +     E Y
Sbjct: 310 ALGIDLGTSPPSFHEMRSLAARLHALEGRDPQKL---LGHRNAAMTEMY 355


>gi|32472034|ref|NP_865028.1| integrase [Rhodopirellula baltica SH 1]
 gi|32397406|emb|CAD72712.1| integrase [Rhodopirellula baltica SH 1]
          Length = 348

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 43/296 (14%), Positives = 86/296 (29%), Gaps = 44/296 (14%)

Query: 64  PRKKPTTL--KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121
            +  P +   + L     +  H    A  +   +     Q+   +G     ++  +H+R 
Sbjct: 43  SQDAPGSHFPESLRLRLSEDLHLTGKAKRTHDGYIRAVRQLSDFAG-CSPDQVNEQHVRQ 101

Query: 122 GVESRKHTPSSAIQFLTS----MRVLFKWAVRQEYVAINPCLSVERPKRK--TEGIRPWT 175
                K+  + A   L      ++  F    ++++        ++  K +  T      T
Sbjct: 102 FFLHLKNDRNFAYGSLRVAFSGIKFFFTHTCKRDW------EIIKMLKLQNITTLPEVLT 155

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYS----GLRCSDSCRAGVQHLQ--NNIFSIKTQKT 229
              ++Q        +  R       ++    GLR +++    V  +        +   K 
Sbjct: 156 ---IEQVHELIGSATTQR--MFVYFWTVYSLGLRLNEALHLQVSDIDAERGWVHVHRGKG 210

Query: 230 GTIITVELPDGFMKLLAM--TPIGKETFFINNDKQ--------------KMNATQFSIWF 273
                V LP   ++LL          +F    D +               M+ T      
Sbjct: 211 AKDRYVPLPTTTVRLLRNYWASHRHPSFLFPADGRKHDLAKDGVSEATTPMSETAVQGAM 270

Query: 274 KAKATKA--GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           K        G   S H +R   AT   +AG     +    G  ++     Y    D
Sbjct: 271 KQITKNLRFGKKVSIHTLRHSYATHLLEAGVGLKVIQKYLGHSSLQTTMVYLHLTD 326


>gi|10955228|ref|NP_044257.1| hypothetical protein R751p48 [Enterobacter aerogenes]
 gi|32470064|ref|NP_863006.1| hypothetical protein p165897_094 [Escherichia coli]
 gi|53793938|ref|YP_112391.1| DNA integrase [uncultured bacterium]
 gi|60115543|ref|YP_209334.1| hypothetical protein SC029 [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|134047152|ref|YP_001102016.1| integrase IntI1 for transposon Tn21 [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|152973776|ref|YP_001338815.1| integrase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|157412100|ref|YP_001481441.1| IntI1 integrase [Escherichia coli APEC O1]
 gi|161867947|ref|YP_001598128.1| hypothetical protein pOU7519_85 [Salmonella enterica subsp.
           enterica serovar Choleraesuis]
 gi|168239505|ref|ZP_02664563.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|169797532|ref|YP_001715325.1| integrase/recombinase (E2 protein) [Acinetobacter baumannii AYE]
 gi|184156542|ref|YP_001844881.1| integrase [Acinetobacter baumannii ACICU]
 gi|237640301|ref|YP_002891156.1| IntI1 [Escherichia coli]
 gi|237810044|ref|YP_002894484.1| IntI1 [Escherichia coli]
 gi|294843384|ref|ZP_06788067.1| IntI1 [Acinetobacter sp. 6014059]
 gi|302141607|ref|YP_003813066.1| integrase type 1 [Klebsiella pneumoniae]
 gi|313116705|ref|YP_004032855.1| integrase [Edwardsiella tarda]
 gi|13344938|gb|AAK19119.1|AF263520_1 integrase INTI1 [Pseudomonas aeruginosa]
 gi|149117|gb|AAA92744.1| IntI1 integrase [Escherichia coli]
 gi|288634|emb|CAA51182.1| integrase [Klebsiella aerogenes]
 gi|1572565|gb|AAC64460.1| Int [Enterobacter aerogenes]
 gi|13508544|emb|CAC35169.1| DNA integrase IntI1 [Achromobacter denitrificans]
 gi|15375396|gb|AAK95981.1| IntI1 integrase [Escherichia coli]
 gi|17046108|dbj|BAB72152.1| DNA integrase [Escherichia coli]
 gi|17157973|gb|AAL36429.1| IntI1 integrase [Pseudomonas aeruginosa]
 gi|24527229|gb|AAM89398.1| IntI1 integrase [Klebsiella pneumoniae]
 gi|28629321|gb|AAO49601.1| IntI1 [Escherichia coli]
 gi|30524990|emb|CAD56838.1| Integrase INTI1 [Pseudomonas aeruginosa]
 gi|33358378|gb|AAQ16665.1| IntI1 [Escherichia coli]
 gi|45758101|gb|AAS76313.1| Int [Salmonella enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|53136974|emb|CAG30882.1| DNA integrase [uncultured bacterium]
 gi|56786620|gb|AAA92752.2| IntI1 integrase [Escherichia coli]
 gi|70905581|gb|AAZ14844.1| IntI1 [Acinetobacter baumannii]
 gi|72536052|gb|AAZ73121.1| IntI1 [Klebsiella pneumoniae]
 gi|78057541|gb|ABB17271.1| site-specific recombinase [Vibrio cholerae]
 gi|78709991|gb|ABB48427.1| IntI1 integrase [Salmonella enterica subsp. enterica serovar
           Kentucky]
 gi|84180556|gb|ABC54721.1| IntI1 [Vibrio cholerae]
 gi|86212237|tpd|FAA00063.1| TPA: IntI1 integrase [Escherichia coli]
 gi|90265400|emb|CAJ77082.1| Integrase [Acinetobacter baumannii]
 gi|99867125|gb|ABF67770.1| IntI1 integrase [Escherichia coli APEC O1]
 gi|108945866|gb|ABG23475.1| integrase [Morganella morganii]
 gi|110346525|emb|CAJ58443.1| class 1 DNA integrase [Pseudomonas aeruginosa]
 gi|126635814|gb|ABO21789.1| IntI1 [Pseudomonas aeruginosa]
 gi|133905071|gb|ABO41086.1| integrase IntI1 for transposon Tn21 [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|134034958|gb|ABO46012.1| integrase [Enterobacter cloacae]
 gi|148455749|gb|ABQ65123.1| IntI1 [Pseudomonas aeruginosa]
 gi|149850111|emb|CAG29002.1| IntI1 [Klebsiella pneumoniae]
 gi|150958558|gb|ABR80585.1| integrase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|161087326|gb|ABX56796.1| IntI1 [Salmonella enterica subsp. enterica serovar Choleraesuis]
 gi|169150459|emb|CAM88359.1| Integrase/recombinase (E2 protein) [Acinetobacter baumannii AYE]
 gi|183208136|gb|ACC55534.1| integrase [Acinetobacter baumannii ACICU]
 gi|191174836|emb|CAQ43032.1| DNA integrase [Pseudomonas aeruginosa]
 gi|197287812|gb|EDY27202.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|207999196|emb|CAQ52799.1| class 1 integrase [Pseudomonas aeruginosa]
 gi|222353664|emb|CAU08341.1| integrase [Pseudomonas aeruginosa]
 gi|223868914|gb|ACN22478.1| integrase 1 [Klebsiella oxytoca]
 gi|224983001|gb|ACN73419.1| IntI1 [Acinetobacter sp. NFM2]
 gi|225121196|gb|ACN81019.1| IntI1 integrase [Acinetobacter baumannii]
 gi|226876274|gb|ACO89459.1| IntI1 integrase [Cloning vector pPSX]
 gi|229561520|gb|ACQ77723.1| IntI1 [Escherichia coli]
 gi|229561900|gb|ACQ78101.1| IntI1 [Escherichia coli]
 gi|254595917|gb|ACT75274.1| integrase [Acinetobacter baumannii]
 gi|283148037|gb|ADB13428.1| class 1 integrase [Escherichia coli]
 gi|283484045|gb|ADB23335.1| IntI1 integrase [Salmonella enterica subsp. enterica serovar
           Typhimurium]
 gi|289065298|gb|ADC80800.1| IntI1 [Escherichia coli]
 gi|289065323|gb|ADC80824.1| IntI1 [Escherichia coli]
 gi|294884937|gb|ADF47470.1| integrase [Pseudomonas aeruginosa]
 gi|296033872|gb|ADG84835.1| integrase type 1 [Klebsiella pneumoniae]
 gi|299757085|emb|CAB92435.2| class 1 integrase [Acinetobacter baumannii]
 gi|307639753|gb|ADN80878.1| IntI1 integrase [Salmonella enterica subsp. enterica serovar
           Typhimurium]
 gi|311629588|gb|ACI29751.2| IntI1 [Pseudomonas aeruginosa]
 gi|312192342|gb|ADQ43828.1| integrase [Edwardsiella tarda]
 gi|316994927|gb|ADU79012.1| IntI1 [Aeromonas veronii]
 gi|317109966|gb|ADU90903.1| IntI1, DNA integrase [uncultured bacterium]
 gi|324007543|gb|EGB76762.1| integron integrase [Escherichia coli MS 57-2]
          Length = 337

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 42/306 (13%), Positives = 94/306 (30%), Gaps = 62/306 (20%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129
           ++ + R+   +   ++ +  ++ ++    IR  G      + +  + + +      RK +
Sbjct: 16  VLDQLRERIRYLHYSLRTEQAYVNWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75

Query: 130 PSSAIQFLTSMRVLFK--WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            S+  Q L ++   +         ++       + RP+         T +++ +   F  
Sbjct: 76  VSTHRQALAALLFFYGKVLCTDLPWLQ-----EIGRPRPSRRLPVVLTPDEVVRILGFL- 129

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
           EG   RL  + L  +G+R S+  +  V+     +    ++  K      + LP+     L
Sbjct: 130 EGEH-RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSL 188

Query: 246 AMTPIGKETFFINN---------------------------------------------D 260
                    +++ +                                              
Sbjct: 189 REQLSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVR 248

Query: 261 KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           +  M    F   FK    +AG+ K  + H +R   AT    +G     +    G   V  
Sbjct: 249 RHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVST 308

Query: 319 AETYTK 324
              YT 
Sbjct: 309 TMIYTH 314


>gi|283796718|ref|ZP_06345871.1| integrase/recombinase, phage integrase family [Clostridium sp.
           M62/1]
 gi|291075602|gb|EFE12966.1| integrase/recombinase, phage integrase family [Clostridium sp.
           M62/1]
          Length = 331

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 34/248 (13%), Positives = 83/248 (33%), Gaps = 14/248 (5%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHTPSSAIQFLTSMRVL 143
           +  S   + S    ++ K G     +ITT  +R+ +      +K +  +       +   
Sbjct: 70  SEKSLKYYASTIRTMLDKIG-KQVLEITTDDLRAYLTDYQAEKKSSKVTIDNIRRILSSF 128

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203
           F W   ++Y+  +P   + + K        ++ E +++ +       +     + L  +G
Sbjct: 129 FTWLEDEDYILKSPIRRIHKVKSAATIKETYSDESLEKMRDKCDS-LRDLAMIDMLSSTG 187

Query: 204 LRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDG----FMKLLAMTPIGKETFFIN 258
           +R  +  R     ++ +    +   K      V             L      +   F++
Sbjct: 188 MRVGEMVRLNRDDIRFDERECVVFGKGDKERIVYFDARTKIHLQNYLQSRTDSEPALFVS 247

Query: 259 NDK--QKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKT 315
                +++      +  +    +  + K   H  R+  AT++ D G    +L    G + 
Sbjct: 248 LRSPHRRLTIGGIELRLRELGKRLDIPKVHPHKFRRTLATMAIDKGMPIEQLQHLLGHQR 307

Query: 316 VDQAETYT 323
           +D    Y 
Sbjct: 308 IDTTMHYA 315


>gi|312902286|ref|ZP_07761494.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX0635]
 gi|86652132|gb|ABD14561.1| Int [Enterococcus faecium]
 gi|283466092|emb|CBG92867.1| Int6000 protein [Enterococcus casseliflavus]
 gi|310634345|gb|EFQ17628.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX0635]
          Length = 410

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 43/317 (13%), Positives = 102/317 (32%), Gaps = 51/317 (16%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           L+W   +Y+ +     +  ++ +      +  I+   G+    KI+  + +  V      
Sbjct: 72  LEWF-EQYKNT-----VKESTYVVQRVALNKHILPLFGERRISKISIPYCQKQVNHWFSY 125

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR------PWTKEDMQQFK 183
                  +     +F++A     +  NP   V RPKR+ +          +TK ++  F 
Sbjct: 126 YKKYSNLIGMTNSIFQYAKSLRLIRRNPMEGVIRPKRQKQIDEEKYTAPFYTKAEVLYFL 185

Query: 184 SFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ------------- 227
               +   P    F  L ++GLR  +      + +       S+K               
Sbjct: 186 QIAKKYPDPLYPMFHILTFTGLRKGELLALRWKDIDFKRGTLSVKQTLTTVEDWKLAFQT 245

Query: 228 -KT-GTIITVELPDG----------------FMKLLAMTPIGKETFFINNDKQKMNATQF 269
            KT  ++ T+ + +                           G +  F   + +       
Sbjct: 246 PKTEKSLRTISIDNQTLSIFRQCILKQKAFFLKTGRKPVENGAQLLFTTEENKPYYLDFL 305

Query: 270 SIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGAD 327
           +        +  +   + HG R    ++  ++GA+  E+    G   V    + Y   ++
Sbjct: 306 NHNLTKILKENKLKHMTVHGFRHTHCSLLFESGASIKEVQVRLGHTDVRTTMDIYAHVSE 365

Query: 328 RIRLGIKNSRRISSVVD 344
           + +   + + R +  ++
Sbjct: 366 QKK--EETADRFADYMN 380


>gi|54294005|ref|YP_126420.1| hypothetical protein lpl1066 [Legionella pneumophila str. Lens]
 gi|53753837|emb|CAH15303.1| hypothetical protein lpl1066 [Legionella pneumophila str. Lens]
 gi|307609834|emb|CBW99352.1| hypothetical protein LPW_11301 [Legionella pneumophila 130b]
          Length = 414

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 49/293 (16%), Positives = 107/293 (36%), Gaps = 20/293 (6%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD 110
            +G  PK+       KK  T+  LI+ + +     +         +     II   G  +
Sbjct: 77  RSGQAPKKIIQIQNEKKNNTMDQLINSWYQGYVIKNRK-KPLQIKQQIEADIIPLLGHLE 135

Query: 111 YRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER---PK 165
             KI    I + +++  ++  P  A + L+S++ +F +A+ +  +  NP  +++      
Sbjct: 136 LEKIKPIDITNALDAIVKRGAPIHANRVLSSLKQVFNYAISRGSLETNPAANIKARNIGG 195

Query: 166 RKTEGIRPWTKEDMQQFKSFW-----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-N 219
            +    R    ++++    F          Q + A + +L +G+R ++   A   H    
Sbjct: 196 IEKPSERFLALDEIKTLWQFLNSDQSKMSLQTKSAIKIILLTGVRTAEIRLAQWSHFDFA 255

Query: 220 NIFSIKTQ---KTGTIITVELPDGFMKLLAMTPIGKETFFINND---KQKMNATQFSIWF 273
           N          K G  + + L +    ++     G ++ F+ +     + ++        
Sbjct: 256 NSLWTIPSELTKGGITVKIHLSELTKSVIFKLNEGSDSPFVLSGLVPNKPLDENALPRAI 315

Query: 274 KAKATKAGVN-KSAHGVRKFSATISADAGA-TAHELMATYGWKTVDQAETYTK 324
           +    + G+   SAH +R+  AT   +        +    G K      TY K
Sbjct: 316 RRIQKRVGIPEWSAHDLRRTFATQLGETLHIDPVVIEKCLGHKMPRIMATYNK 368


>gi|294776786|ref|ZP_06742249.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
 gi|294449262|gb|EFG17799.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
          Length = 404

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 44/287 (15%), Positives = 97/287 (33%), Gaps = 37/287 (12%)

Query: 72  KWLISEYRKSAH-WGSL-----AVNSRISFESYFDQIIR------KSGDFDYRKITTKHI 119
           K L+  +R+    + +L        + + +E     +        KS D  +R I  + +
Sbjct: 108 KMLLERFREHNEKYRALIGKDVVEATVLRYERTVRYLEEFLKKEYKSSDIPFRNIDRQFV 167

Query: 120 RSG----VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
                     +    ++ +++L  ++ +   A+  +++  NP   ++  + +T      T
Sbjct: 168 EKFEYFIKTEKNCAQNATVKYLKILKKIVTLALTNKWMTENPFTGIKFKQTQTN-RDFLT 226

Query: 176 KEDMQQFKSF---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQ 227
           ++++                R  F F   SGL  +D      +H+  +           +
Sbjct: 227 EDELHAIMEKKFDIPRLEAVRDIFVFCCLSGLAFTDVQHLKPEHITKDINGEWWIRKARE 286

Query: 228 KTGTIITVELPDGFMKLL---AMTPI--GKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
           KT  +  + L D    ++      P+   K         Q+MN+     + K  A   G+
Sbjct: 287 KTNNMCHIPLLDIPAMIIEKYRKNPVCLQKNVVLPVPSNQRMNS-----YLKEIADVCGI 341

Query: 283 NK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
            K  + H  R   A  +     +   +    G   +   + Y K  D
Sbjct: 342 TKKLTTHCARHSFACFALANKVSMETIAKMLGHSDIRTTKIYAKVLD 388


>gi|307544706|ref|YP_003897185.1| phage-related integrase [Halomonas elongata DSM 2581]
 gi|307216730|emb|CBV42000.1| phage-related integrase [Halomonas elongata DSM 2581]
          Length = 336

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 59/335 (17%), Positives = 118/335 (35%), Gaps = 33/335 (9%)

Query: 17  RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76
           +HG   YY+R     R             +Y  AL     + +     +     L+ LI 
Sbjct: 11  KHG--AYYYRPRQHERAAFDNKSWFRLGESYTEALRAFADRMDIQTGDK-----LEELID 63

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAI 134
            Y       +L+ +++ ++     ++    G      I  + +   ++   R+ +   A 
Sbjct: 64  RYTVEV-LPTLSYSAQNNYRQSLRRLRPTMGSNPVAVIVPRLVYQYMDEVQRRKSMHLAN 122

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ--QFKSFWSEGSQP 192
           Q L  +  +  +AVR   +  +P   + +   K +G+R      ++  +  ++ +  ++ 
Sbjct: 123 QDLKVLNRVLDFAVRWGVIDRHPIKGLVKAYGKRDGLRKGRDRYVEDWELAAWQTVATRQ 182

Query: 193 RLAFE-FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA----M 247
           + AF   +L +G+R SD  R    H+  N  +++  KTG  I   L D     +A     
Sbjct: 183 QRAFAAIILLTGIRKSDCLRLMENHVGENTLTVQVAKTGNSIDFVLTDALRAAIAEARSC 242

Query: 248 TPIGKETFFINNDKQKM--------NATQFSIWFKAKATKA-GVNK--SAHGVRKFSATI 296
            P        N   +                     KA +A  +    + H +R    + 
Sbjct: 243 KPKLSLYLLPNRRGRCYVNEDGLTQTWDGRWRATMDKALEATDLEHAFTQHDLRAKVGSD 302

Query: 297 SADAGATAHELMATYGWKTVD-QAETYTKGADRIR 330
            A+  A A EL       +V    + Y +    I+
Sbjct: 303 -AENDARAQEL---LDHTSVAVTRQHYRRKRQAIK 333


>gi|255280908|ref|ZP_05345463.1| putative tyrosine recombinase XerC [Bryantella formatexigens DSM
           14469]
 gi|255268356|gb|EET61561.1| putative tyrosine recombinase XerC [Bryantella formatexigens DSM
           14469]
          Length = 352

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 52/327 (15%), Positives = 109/327 (33%), Gaps = 39/327 (11%)

Query: 41  STFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD 100
             F   Y  A+  +T  R  I+         ++L+ E   S     +   +        D
Sbjct: 28  PGFARDYFRAIEPTTSTRTRISYAYDIRVFFQFLLEE-NPSLRGKEMTDITLD----ILD 82

Query: 101 QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
           +I     +     +       G+++      +  + + ++R  + +  ++E +  NP L 
Sbjct: 83  KIKPVDIEEYLEYLKVYQSEDGLKTNGE--RALKRKMVALRGFYAYYFKREMIKTNPTLL 140

Query: 161 VERPKRKTEGIRPWTKEDMQQFKS---------------FWSEGSQPRLAF-EFLLYSGL 204
           V+ PK   + I     ++                     +W +  +  LA    LL +G+
Sbjct: 141 VDMPKIHDKAIVRLDTDETASLLDYIEHAGDSLSGQKKVYWEKTKRRDLALVTLLLGTGI 200

Query: 205 RCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLA--------MTPIGKE- 253
           R S+     +  +   NN   +  +K G  + V   D   K L         +TP+    
Sbjct: 201 RVSECVGLDIGDVDFKNNGIKV-VRKGGNEMVVYFGDEVEKALRDYLEERCGITPVAGSE 259

Query: 254 -TFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMAT 310
              F++  ++++         K  A +    K  + H +R    T         + +   
Sbjct: 260 NALFLSTQRKRIGVQAVENLVKKYARQITTTKKITPHKLRSTYGTSLYQETNDIYLVADV 319

Query: 311 YGWKTVDQA-ETYTKGADRIRLGIKNS 336
            G K V+   + Y    D+ R    ++
Sbjct: 320 LGHKDVNTTKKHYAAMDDQRRRSAASA 346


>gi|298482697|ref|ZP_07000881.1| tyrosine type site-specific recombinase [Bacteroides sp. D22]
 gi|298271160|gb|EFI12737.1| tyrosine type site-specific recombinase [Bacteroides sp. D22]
          Length = 416

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 36/226 (15%), Positives = 74/226 (32%), Gaps = 11/226 (4%)

Query: 111 YRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170
           +R+      + G +    + ++A  + +  +   K A    Y+ I+    V+  + +   
Sbjct: 183 FRQFIMNAPQGGTKRGTISQNTAATYFSIFKAGLKQAFIDGYLTIDISAKVKGIQERESR 242

Query: 171 IRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----NNIFSIKT 226
               T E++ +      +    R A    L +G+R  D  +     ++        +   
Sbjct: 243 REYLTVEELNRLAQTPCDPLLKRAALFSAL-TGIRHCDIQKLKWSEVEMFNGGYRLNFTQ 301

Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284
           QKT  +  + + +    L      G+   F                 K     AG++K  
Sbjct: 302 QKTKGVEYMPISEQAYSLCGEQQEGELLVFAGLPDPSWINRP----VKRWVEAAGISKHI 357

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
           + H  R   AT+    G   + +    G   V   + Y K  D  +
Sbjct: 358 TFHCFRHSYATLQLAGGTDIYTVSKMLGHTNVKTTQVYAKVVDEKK 403


>gi|291009716|ref|ZP_06567689.1| phage integrase family site specific recombinase [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 319

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 48/298 (16%), Positives = 93/298 (31%), Gaps = 29/298 (9%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-----------FDYRKITTKH 118
           T    + ++ +S   G+    +R ++     Q+ R   +            D  ++   H
Sbjct: 16  TWAGYLRDWDRSLRSGNRPETTRYNYVLAAAQLARYLAEHAPDPEADAAAEDPAEVAKAH 75

Query: 119 IRSGVESRKHTPSSAIQFLT--SMRVLFKWA-VRQEYVAINPCLSVERPKRKTEGIRPWT 175
           I +       T S+A       +++ LFKW  + +E +  +P   V  PK  T+ +    
Sbjct: 76  IEAFQAWMIETRSAATAVNKHKALQQLFKWLMLDEEEIDRSPMERVRLPKAPTKLVPVLE 135

Query: 176 KEDMQQFKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---------NNIF 222
           +E   +             + +        +G R ++     ++ +              
Sbjct: 136 EEATTRLLEVCKGKDFLSLRDQAIIRLFCNTGARLAEVAHLRLEDVDLKTESVTLYGKGG 195

Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK-QKMNATQFSIWFKAKATKAG 281
            ++  + G      L                  ++ +   Q +NA    I  K    +AG
Sbjct: 196 KVRRVRMGARTARALSRYLRARAKRKGADLPNLWLADRGGQALNANGIKIRLKRLGQRAG 255

Query: 282 VNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338
           ++   AH  R   A     AG    +LM   GW +      Y   A   R      R 
Sbjct: 256 LDHVHAHRWRHTYAHQWKRAGGDTGDLMLLLGWSSDAMPRHYGASAAAERAQESQVRM 313


>gi|167761886|ref|ZP_02434013.1| hypothetical protein BACSTE_00229 [Bacteroides stercoris ATCC
           43183]
 gi|167700256|gb|EDS16835.1| hypothetical protein BACSTE_00229 [Bacteroides stercoris ATCC
           43183]
          Length = 330

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 35/282 (12%), Positives = 91/282 (32%), Gaps = 21/282 (7%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR----SGVESRKHT 129
           L++ +  +      +  +   + +  ++++          ITT  IR       E  + +
Sbjct: 55  LLNSFISAKKIEGCSDKTLAYYRNTIERLLVTL-SLAICHITTTDIRTYLSDYQEEHQSS 113

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
             +           F W   ++Y+A +P   + + K  +      + E ++Q +   +  
Sbjct: 114 KVTIDNMRRIFSSFFAWLEDEDYIAKSPVRRIHKVKTDSLVKEVLSDEQLEQLRDSCTT- 172

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT----QKTGTIITVELPDG----F 241
            +     +FL  +G+R  +  +   + +    F  +      K      V          
Sbjct: 173 KRDLAIIDFLSSTGIRVGELVKLNREDID---FHERQCVVFGKGNKERIVYFNARTKLHL 229

Query: 242 MKLLAMTPIGKETFFINNDKQK--MNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISA 298
            + L          F++       +  +   I  +       + K   H  R+  AT++ 
Sbjct: 230 QQYLNGRTDDNPALFVSLHSPHTRLTISGVEIRIRKLGQSLSMPKVHPHKFRRTLATMAI 289

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
           D G    ++    G   +D    Y    ++  + + + + + 
Sbjct: 290 DKGMPIEQVQRLLGHVRIDTTLHYA-IVNQNNVKLAHKKYLG 330


>gi|298292615|ref|YP_003694554.1| integrase family protein [Starkeya novella DSM 506]
 gi|296929126|gb|ADH89935.1| integrase family protein [Starkeya novella DSM 506]
          Length = 458

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 53/306 (17%), Positives = 89/306 (29%), Gaps = 36/306 (11%)

Query: 56  PKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT 115
            K     S      T+  ++  Y ++     +         +    I  K G     ++T
Sbjct: 93  AKSIKAGSDASPALTVDAILDRYFEARAAEGMKSIYDAKSRAGL-HIRPKLGKLRISELT 151

Query: 116 TKHIRSGVESRKHTPS-----------------------------SAIQFLTSMRVLFKW 146
              IR   ++    P                              +A + LT+++    W
Sbjct: 152 VDKIRRWRDAMAAAPRKVRTGKHAAKPNLRPVDPNDPEATRRRRDTANRTLTTLKAALNW 211

Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRC 206
           A  Q  V  +    + +P R T   R     D +Q +   +     R      L +G R 
Sbjct: 212 ARDQRLVDDDTAWRLVKPYRGTTAARVRFLSDGEQQQLLDNAEGDVRNLIAAALLTGARF 271

Query: 207 SDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKL--LAMTPIGKETFFINNDKQ 262
            +  R  V+     N    I   K+G    V L  G   L  L           +  + +
Sbjct: 272 GELARLLVRDFDAANGSIFIAESKSGKARHVPLTTGGRALFSLLAGGRSGSAPMLTRNDE 331

Query: 263 KMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE- 320
                 +   F A    AG+ + + H +R   A+    AGA    +    G       E 
Sbjct: 332 AWRPATYQRAFHAALEAAGLSDITLHELRHSYASTMVRAGAPLMVVARALGHADTRMVEK 391

Query: 321 TYTKGA 326
            Y   A
Sbjct: 392 HYAHLA 397


>gi|150007997|ref|YP_001302740.1| integrase [Parabacteroides distasonis ATCC 8503]
 gi|298378107|ref|ZP_06988045.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           3_1_19]
 gi|149936421|gb|ABR43118.1| integrase [Parabacteroides distasonis ATCC 8503]
 gi|298264989|gb|EFI06664.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           3_1_19]
          Length = 311

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 48/284 (16%), Positives = 104/284 (36%), Gaps = 36/284 (12%)

Query: 90  NSRISFESYFDQIIRKSG--DFDYRKITTKH---IRSGVESRKHTPSSAIQFLTSMRVLF 144
           ++  S++   +      G     Y  I        +S +  +  + ++   ++  +R ++
Sbjct: 25  STAKSYQDALNSFKCFCGMEAIPYAYINRNRLLCYQSWLLDKGRSLNTVSTYMRRIRHIY 84

Query: 145 KWAVRQEYVAINP------CLSVERPKRKTEGIRPWTKEDMQQ-FKSFWSEGSQPRLAFE 197
             AV        P         VE  ++K        +E +++ F +   + S  R+   
Sbjct: 85  NLAVEANEAPFVPNLFKDVFTGVESKRKK-----ALPREMLERMFNAPLEDPSLRRVQLT 139

Query: 198 FLL---YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL----AMTPI 250
             L   +SG+   D      +++++ I     QK+G++I +E+P G ++LL    A T  
Sbjct: 140 VRLMFAFSGIAFVDLTHLKWENIRDGILQYHRQKSGSLIQLEIPSGALRLLDELSACTAK 199

Query: 251 GKETFFINNDKQK----------MNATQFSIWFKAKATKAG--VNKSAHGVRKFSATISA 298
                F     ++             ++F+   K  A   G  +  +++ +R   A+   
Sbjct: 200 ESLYLFPFLSGRRTGEAAYKEYNRTLSRFNRDLKLLARSTGVTLPVTSYTIRHSFASFLK 259

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
           +   +   +    G K++   + Y K     RL   N     SV
Sbjct: 260 EQDVSIEVISELLGHKSIKTTQIYLKSFSLERLSTVNRNCFESV 303


>gi|89068699|ref|ZP_01156085.1| tyrosine recombinase [Oceanicola granulosus HTCC2516]
 gi|89045662|gb|EAR51724.1| tyrosine recombinase [Oceanicola granulosus HTCC2516]
          Length = 307

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 38/246 (15%), Positives = 73/246 (29%), Gaps = 20/246 (8%)

Query: 105 KSGDFDYRKITTKHIRSGVES---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV 161
           + G     ++    +R+ +     R  +  S  + L++++  ++W   +E       LS 
Sbjct: 52  QQGLAPLARVGVSDMRAWMAHERGRGVSARSLARALSAVKGFYRWIAEREGFEPTAVLST 111

Query: 162 ERPKRKTEGIRPWTKEDMQQFKSFWSE-------GSQPRLAFEFLLYSGLRCSDSCRAGV 214
             PK + +  RP   +  Q                ++       L   GLR S++     
Sbjct: 112 RSPKFQKKLPRPLAVDAAQAMIDRVELQAREGWVAARDVAVVTLLYGCGLRISEALGLTG 171

Query: 215 QHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI-------GKETFFINNDKQKMNAT 267
             +          K G    V +       +                 F       +N  
Sbjct: 172 AAVPLPEVVRIVGKGGKERVVPVIAPARDAVDAYARLCPHPLEPHLPLFRGVRGGALNPR 231

Query: 268 QFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
                 +    + G+  +A  H +R   AT    AG     +    G  ++   + YT  
Sbjct: 232 AIQKVMEQARLQLGLPATATPHALRHSFATHLLGAGGDLRSIQELLGHASLSTTQAYT-A 290

Query: 326 ADRIRL 331
            D  RL
Sbjct: 291 VDTARL 296


>gi|228920886|ref|ZP_04084225.1| Prophage LambdaBa04, site-specific recombinase, phage integrase
           [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|228838817|gb|EEM84119.1| Prophage LambdaBa04, site-specific recombinase, phage integrase
           [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1]
          Length = 378

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 46/310 (14%), Positives = 97/310 (31%), Gaps = 48/310 (15%)

Query: 84  WGSLAVNSRI-----SFESYFD----QIIRKSGDFDYRKITTKHIRSGVESRKHTP---S 131
           W  L    +      S+E         I+        + I    I+S     K       
Sbjct: 69  WEKLKPLRKAELKITSYEKDMSLVRLYILPPFSYKKIKSIKPVMIQSYYAELKGKGLSNG 128

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-GS 190
           +       +R +FK AV  E +  N    V++P+ +   ++ W+ E+  +F  +  E   
Sbjct: 129 TISNIHRCLRCIFKHAVEWEIIHDNIMNKVKKPREEQGEMKTWSSEECNRFLQYLKEKNI 188

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250
           +  + F   +Y+G+R  +      + +  +   I   K+       L     K  +    
Sbjct: 189 KYHMFFLLAIYTGMRRGELLALTWKDIDFDNKRILVNKSLVKTEKGLFKAATKTKSSNRS 248

Query: 251 GKETFFINNDKQKMNATQFSIWFK-------------------------------AKATK 279
              + F+    Q   + +   +F+                                   K
Sbjct: 249 ISISSFVIEKLQSYYSYKKKEFFRWGIHLNEEAFIFTGNTIHSPLHIDAPHRFLNDHYKK 308

Query: 280 AGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSR 337
           A V +   H +R   AT+   AG     +    G  ++    + Y+       +  + + 
Sbjct: 309 ADVPRIRIHDLRHTHATLMLQAGEHPKIVQDRLGHSSIQMTLDKYSHITQ--NMQQQAAE 366

Query: 338 RISSVVDSDD 347
              S++ S++
Sbjct: 367 NFESIIKSNE 376


>gi|303245432|ref|ZP_07331716.1| integrase family protein [Desulfovibrio fructosovorans JJ]
 gi|302493281|gb|EFL53143.1| integrase family protein [Desulfovibrio fructosovorans JJ]
          Length = 339

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 46/319 (14%), Positives = 97/319 (30%), Gaps = 17/319 (5%)

Query: 17  RHGKIIYYFR-KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75
           + G + +  R +  G                +   +     K +++++   +  TL   +
Sbjct: 6   KRGNLQWEARIRKRGYPTTCKTFDTKAEAEQWAKGVETEMSKGQFVSTKEAEGYTLGECL 65

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQ 135
             Y++   +     N +           R  G      I +K I      R+    SA  
Sbjct: 66  DRYKE--EYLPRLKNPQSEIYRADRLKKRALGLRIMATIRSKDIADYRREREKEGVSANT 123

Query: 136 F---LTSMRVLFKWAV-RQEYVA-INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
               L  +  LF +A       +  NP     +PK      R   + + ++         
Sbjct: 124 IRLELALLSRLFNFAKSDWGMESLTNPVQLAAKPKLPPGRERRLEQGEEEKLFEAIGNDF 183

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMT 248
           +     +  L + +R  +  +   + +   N    ++  K GT  TV L    +++    
Sbjct: 184 EFSAIIKIALETAMRRGEILKLTWKDVDLRNKAVFLQDTKNGTCRTVPLSKKAIEVFQGL 243

Query: 249 PIG-KETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADA-GATAH 305
                   F +           S        +AG+ +   H +R  + +   +       
Sbjct: 244 HRHISGKVFPSCT----VPQSLSKKMAKACQRAGLADLRFHDLRHEATSRFFEHTDLDVM 299

Query: 306 ELMATYGWKTVDQAETYTK 324
           E+ A  G K++     YT 
Sbjct: 300 EIKAITGHKSLQMLARYTH 318


>gi|189463323|ref|ZP_03012108.1| hypothetical protein BACCOP_04040 [Bacteroides coprocola DSM 17136]
 gi|189429942|gb|EDU98926.1| hypothetical protein BACCOP_04040 [Bacteroides coprocola DSM 17136]
          Length = 420

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 41/241 (17%), Positives = 84/241 (34%), Gaps = 10/241 (4%)

Query: 110 DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
           D +    +    G +    + ++A  + + ++   K A   EY+ ++    V+       
Sbjct: 182 DIKMFLLRAPMGGNKKGTISQNTASTYFSILKAGLKQAFVDEYLTVDISAKVKGITNIET 241

Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSI- 224
                T  ++Q       +    + AF F + +GLR SD      + +    +    +I 
Sbjct: 242 PRVALTMNEVQMLVDTPCKDDVLKRAFLFSILTGLRHSDIQALKWKQIQQTSKGTWQAIV 301

Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284
             QKT       +    ++L    P   E            A+  S   KA    +G+ K
Sbjct: 302 IQQKTKRPDYKPVIQQALQLCGERPSNDEALVFEGLTD---ASWISRPLKAWIEASGIKK 358

Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
             + H  R   A++  + G   + + +  G   V   + YT   +  +    N+  I ++
Sbjct: 359 HITFHCGRHSYASLLLENGVDIYTIKSLMGHTNVKTTQIYTHIVNEQKEKAANTLHIENL 418

Query: 343 V 343
            
Sbjct: 419 A 419


>gi|170701053|ref|ZP_02892031.1| integrase family protein [Burkholderia ambifaria IOP40-10]
 gi|170134033|gb|EDT02383.1| integrase family protein [Burkholderia ambifaria IOP40-10]
          Length = 332

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 44/291 (15%), Positives = 98/291 (33%), Gaps = 19/291 (6%)

Query: 45  PAYMSALTGSTPKREYINSPRKKPTTLKWLISEY--RKSAHWGSLAVNSRISFESYFDQI 102
             +  A+     +  ++++   + TTL  L+ +Y  R S              +S     
Sbjct: 39  EDWARAVETEMRRGTFVDTAAARETTLGDLLQKYAERVSPT-KKSGAGEAKRIQSMLKWF 97

Query: 103 IRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWA-VRQE-YVAINPC 158
           + K        IT   +    + R    + S+  + L  +  +F  A +  + ++ +NP 
Sbjct: 98  LCKY---AVVNITPAVLAEWRDERLQSVSGSTVNRELNLLSHVFSTAMIEWDIHLPVNPV 154

Query: 159 LSVERPKRKTEGIRPWT--KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216
             + RPK      R     +E +  ++   +       A    + +G+R S+       +
Sbjct: 155 SRIRRPKHNKPRNRRTEGGEESLLLYECRKARNKHLYPAVLLAIETGMRRSEVVGIEWPN 214

Query: 217 LQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274
           +     +  +   K G    V L     + LA     +           +        ++
Sbjct: 215 IDLKRRVLWLPDSKNGEGRAVALSTRAAQALAAIATDRNGPVF----PGLTVDAIKCAYR 270

Query: 275 AKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
               +A ++    H +R  + +   + G    E+ +  G KT+   + YT 
Sbjct: 271 RARKRAKIDGLRFHDLRHEATSRLFEKGLNPMEVASITGHKTLSMLQRYTH 321


>gi|319938811|ref|ZP_08013175.1| phage integrase family Site-specific recombinase [Streptococcus
           anginosus 1_2_62CV]
 gi|319811861|gb|EFW08127.1| phage integrase family Site-specific recombinase [Streptococcus
           anginosus 1_2_62CV]
          Length = 385

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 54/350 (15%), Positives = 108/350 (30%), Gaps = 47/350 (13%)

Query: 20  KIIYYFRKGHGRRIRLPYPHESTFIPA--YMSALTGSTPKREYINSPRKKPTTLKWLISE 77
           K+  Y R   G+R         +   A  Y + +       +     R        +  E
Sbjct: 18  KVRIY-RVIDGKRQDFFKSGFKSLREARQYEAMIYHKKASGDLSGLLRASERRFDEVFEE 76

Query: 78  YRKSAHWGSLAVNSRISFESYF--DQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQ 135
           + K+  + +    +            I+   G+    KIT  H +  +  +  T  +  Q
Sbjct: 77  WFKT--YQNTVERTTSVRTDDLFRIHILPVLGNMKISKITPWHCQDFITEKGQTFRNIKQ 134

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRK-TEGIRPWTKEDMQQFKS--FWSEGSQP 192
             +    +F +A++ + +  NP      PKR+  +    ++ E++ +F +     E  + 
Sbjct: 135 VKSYTSQVFDFALKMKLITDNPMKQTILPKRERKKSDNFFSVEELHEFLAIIKAEEPYKN 194

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK-----TGTII-----------TVE 236
              F  L YSGLR  +        +  +   +   K      G  +            + 
Sbjct: 195 YALFRLLAYSGLRKGELYSLRWSDIDFDNQLLSISKNLGRIKGKAVEKSTKNRFSIRQIP 254

Query: 237 LPDG----FMKLLAMTPIGKETF-------------FINNDKQ--KMNATQFSIWFKAKA 277
           L         +    +   K                F++ D +   +     +   K   
Sbjct: 255 LDTETVSILKEWKQKSRREKGQLSVTPLIGSDYMFTFVDRDGKIEPLYQDYINSVLKRII 314

Query: 278 TKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKG 325
            K G+ K + HG R   AT+  + G          G  +     +TY+  
Sbjct: 315 RKHGLKKITPHGFRHTHATLMIEVGVDPVNAAKRLGHASSQMTLDTYSHS 364


>gi|221369889|ref|YP_002520985.1| Phage integrase [Rhodobacter sphaeroides KD131]
 gi|221162941|gb|ACM03912.1| Phage integrase [Rhodobacter sphaeroides KD131]
          Length = 434

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 49/298 (16%), Positives = 93/298 (31%), Gaps = 39/298 (13%)

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHIR 120
            S R++    + LI  Y K  H   LA  S    +S   +++    G     +IT   + 
Sbjct: 101 RSRRREAPRFQDLIDRYLKE-HVPRLAPVSAADQKSMLAKLVAPYWGRKLVTEITKPDVE 159

Query: 121 SGVESR----------------------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158
             +                         K TP  A +    +R +F  A+   +   NP 
Sbjct: 160 KLLAQIAEGRARPSKAKPNNRARKLQGPKPTPVRANRVGEVLRKMFNLAIEWGWRTDNPA 219

Query: 159 LSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA--FEFLLYSGLRCSDSCRAGVQH 216
               R        R  +K+++ +           R A      + +G R  +  ++  + 
Sbjct: 220 NGFFRRIENPRE-RFLSKDEIDRLAKALDAAEDQRAAGIIRICMLTGARVGEVRQSRFEQ 278

Query: 217 LQNNIFSI----KTQKTGTIITVELPDGFMKLLA----MTPIGKETFFINN-DKQKMNA- 266
                        T K   +  V + +    ++     + P G    F  +   Q +   
Sbjct: 279 FDLEHCLWSKPAATTKQRRVHRVPISEDVSAIVRQRRLLVPKGSPWLFPGDVPGQPVKEI 338

Query: 267 TQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            +F I  + +A   GV    H +R   A++    GA+   +    G   +   + Y  
Sbjct: 339 RRFWIRIQKEAQIEGV--RIHDLRHTFASLLVSGGASLEMIGKLLGHTQMQTTQRYAH 394


>gi|268611842|ref|ZP_06145569.1| integrase family protein [Ruminococcus flavefaciens FD-1]
          Length = 404

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 50/309 (16%), Positives = 106/309 (34%), Gaps = 52/309 (16%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYF---DQIIRKSGDFDYRKITTK----HIRSGV 123
           L  LI+ Y ++     +++ S  S++S     +Q+    G      +T +     + + +
Sbjct: 89  LDNLINTYIETV--KKVSIRS-TSYDSVLVSANQVNEHLGYLSISNLTPEIIQTDLINKM 145

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR---KTEGIRPWTKEDMQ 180
               +   +  +    +     +AV ++Y+  NPC+ V+ P +   + +  R    +++Q
Sbjct: 146 IELDYAYGTIHKAYVILNECLNYAVFKDYITKNPCMGVKLPSKDNFEKKERRFLNDDEIQ 205

Query: 181 QFKSFWSEGSQPRLA--------FEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK----- 225
            FK+                      +LY+GLR  +      + +   + I S+      
Sbjct: 206 TFKAQACVSQSNFNIPKYVYGNIICLILYTGLRVGELSALKWKDIDFQHKILSVNKAVVV 265

Query: 226 -----------------TQKTGTIITVELPDGFMKLLAMTPI----GKETFFINNDKQKM 264
                            T K+G    + L    +++L           + F +N  KQ  
Sbjct: 266 VYDYSAKPKKRTLTVQDTTKSGKPRVIPLNQKAIQILETQRSLFGGDDDCFIVNGTKQIP 325

Query: 265 NATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAET 321
           + T  +  +   A  A +      H +R   A+ +   G     +    G  +V     T
Sbjct: 326 DKTVVANSYSKIARAAKIPDPSGIHTLRHTFASSAIRKGVDIKVVSEILGHASVTFTYNT 385

Query: 322 YTKGADRIR 330
           Y    D  +
Sbjct: 386 YVHIIDEQK 394


>gi|256393898|ref|YP_003115462.1| integrase family protein [Catenulispora acidiphila DSM 44928]
 gi|256360124|gb|ACU73621.1| integrase family protein [Catenulispora acidiphila DSM 44928]
          Length = 354

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 81/222 (36%), Gaps = 23/222 (10%)

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINP------CLSVERPKRKTEGIRPWTKE 177
           +  +  P++  + ++++R  + +AV   Y + +P       L + R  RK++ + P  +E
Sbjct: 111 DEGRARPATLARKISAVRNFYAYAVDSGYTSSSPVPIKDKALHLPRVSRKSQTLGPDREE 170

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL---QNNIFSIKTQKTGTIIT 234
                ++    G +       LLY GLR S+ C   V+ L   + +      +K G    
Sbjct: 171 SAAMLEAAAQRGVRDEAVVAVLLYQGLRVSELCGINVEDLSSQRGHRVVRLRRKGGEEQD 230

Query: 235 VELPDGFMKLLAMTPIGK------------ETFFINNDKQKMNATQFSIWFKAKATKAGV 282
             +       L      +               F+  +  ++   Q     ++ A  AGV
Sbjct: 231 QAIAPPAAGCLDAWLAERARDSAFGAVPASGPVFVGPEGARLTRYQVEWIVESCARAAGV 290

Query: 283 NK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
            K  S H +R    T+  DAG    ++    G       E Y
Sbjct: 291 EKKISPHSLRHACTTMLLDAGVPLRDIQVYMGHANSATTERY 332


>gi|228471614|ref|ZP_04056388.1| tyrosine recombinase XerC [Capnocytophaga gingivalis ATCC 33624]
 gi|228277033|gb|EEK15719.1| tyrosine recombinase XerC [Capnocytophaga gingivalis ATCC 33624]
          Length = 296

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 76/218 (34%), Gaps = 15/218 (6%)

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           +  R  T  S  + L S++  + + VR   +  +P +     K   +   P++  ++   
Sbjct: 58  LVERGITNRSINRKLASLKAYYAFLVRTLAIKASPFVPHIPLKAPKKISIPFSSREIDSV 117

Query: 183 KS---FWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE 236
            S        +Q R     E    +G+R ++     +  +  +  ++K   K      + 
Sbjct: 118 LSQPIVEDSYTQMRNKTIIELFYATGMRRAELIDLKISDIDFSQKTVKVLGKRNKERIIP 177

Query: 237 L-------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA--GVNKSAH 287
           L        + ++ L       +   F+ +  +KM          +  + A   + KS H
Sbjct: 178 LIHTVVETLEKYLTLRKGVETNEVFLFLTDKGKKMYPKLVYNIINSYFSTATTKLKKSPH 237

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
            +R   AT   D GA  + +    G   +   + YT  
Sbjct: 238 VLRHSFATHLLDNGADLNAVKELLGHAGLAATQVYTHS 275


>gi|224825788|ref|ZP_03698892.1| integrase family protein [Lutiella nitroferrum 2002]
 gi|224602012|gb|EEG08191.1| integrase family protein [Lutiella nitroferrum 2002]
          Length = 342

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 44/289 (15%), Positives = 84/289 (29%), Gaps = 45/289 (15%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG-----VESRKHTPSSAIQFLTSM 140
            LA  S  ++     +        D  ++    + +       +  K  P S   ++  +
Sbjct: 17  GLADRSVRAYRDILVRYEAWLDGRDPLEVNGDQLLAFCGPYLHKQLKLAPVSRTPYVACI 76

Query: 141 RVLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLA 195
             L+++    +     +P  +V  P++  +  R  T +  ++          EG +    
Sbjct: 77  HELYRYLSAVRGLTGRDPSQAVPYPRKPGKLPRVATLDTAERLMWAPDFNTFEGVRDAAM 136

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNN------IFSIKT-QKTGTIITVELP---------- 238
              LL  GLR S        +L           ++K  +K G    + +P          
Sbjct: 137 LALLLGCGLRVSGLAALNEGNLTTQVVDGEPRLALKPIEKGGKERLIPVPREADLLLRVY 196

Query: 239 ---DGFMKLLAMTPIGKETFFINND------------KQKMNATQFSIWFKAKATKAGVN 283
                   +   TP G    FI               +++ +        +     AG+ 
Sbjct: 197 MEHPDLEGIDRSTPSGDRVLFITTRNRRCPAHEYYGERRRFSTRGVFAMIQRHGKAAGIP 256

Query: 284 ---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
               + H +R    T  A+      E     G K       YT  A R 
Sbjct: 257 EEQLNPHALRHLFGTELAEGDIDLLERQNLMGHKDPKSTAIYTHLAFRK 305


>gi|302349105|ref|YP_003816743.1| Tyrosine recombinase XerC/XerD [Acidilobus saccharovorans 345-15]
 gi|302329517|gb|ADL19712.1| Tyrosine recombinase XerC/XerD [Acidilobus saccharovorans 345-15]
          Length = 324

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 42/288 (14%), Positives = 89/288 (30%), Gaps = 28/288 (9%)

Query: 55  TPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-FDYRK 113
             +R     P     ++   +  +  +      +  +  S+ +         G      +
Sbjct: 2   PARRIQQPQPEVLSKSVADAVESFLSALEASGASKLTLKSYRAALQSFASHVGPSRPVSQ 61

Query: 114 ITTKHIRSGVESRKHT---------PSSAIQFLTS-MRVLFKWAVRQEYVAINPCLSVER 163
           ++     S +   +            SS + + T  +R   +W          P      
Sbjct: 62  LSQADYLSWLSEMRSKGPVGPRGGRWSSTVHYYTIFVRRFLQWLGISGL----PAE---- 113

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223
           P+R++E     + ++++   S   +     L    +  SGLR  +        +      
Sbjct: 114 PQRRSEFSGALSWKEVEAMMSKARD-LYDLLILSLMAESGLRAREVVNLTWGDIDLAKGE 172

Query: 224 IKTQKT-GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
            + +   G    V L      +L++ P G      N    K++        K+ A +AG+
Sbjct: 173 ARVRGKYGKERLVVLGQVARSVLSVLPPGGP----NERVVKLSYQAIYDRVKSLARRAGI 228

Query: 283 NKS---AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           + S    H +R   AT +   G +   L    G   +   + Y    D
Sbjct: 229 DVSKVRPHVLRHTFATEALRRGMSLPVLQRLLGHSDIRITQVYLHLLD 276


>gi|284989441|ref|YP_003407995.1| integrase family protein [Geodermatophilus obscurus DSM 43160]
 gi|284062686|gb|ADB73624.1| integrase family protein [Geodermatophilus obscurus DSM 43160]
          Length = 370

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 54/331 (16%), Positives = 107/331 (32%), Gaps = 37/331 (11%)

Query: 16  TRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75
            R  K + ++R   G++      H       +      +     +++  R K T  +W  
Sbjct: 4   KRGDKWVGFYRDVAGKQHTNGNFHRKRDADLWEQEQKAAIRNDTWVDPSRSKMTVGQW-- 61

Query: 76  SEYRKSAHWGS----LAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKH-- 128
                S  W +    L   +  S+ S    +++         +I    + + V + +   
Sbjct: 62  -----SETWIAGRVHLKPKTLSSYRSLLATRVLPTWNTVPLTRIRHSDVVAWVAAMRAEL 116

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           + S   Q    +  +   AVR   +A NP   V  P+      R  T + +         
Sbjct: 117 SASRTRQAYHLLSSMLDDAVRDNRLARNPATGVGLPRLPKSDRRYLTHQQLADLADGCGP 176

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---------------NNIFSIKTQKTGTII 233
               RL      Y+GLR  +      + ++               +      T KT    
Sbjct: 177 H---RLMVLVAGYTGLRWGELTGLRARRVESLRGRIDVVEAVTEVDGGMVFGTPKTHQHR 233

Query: 234 TVELPDGFMKLLAMTPIGK---ETFFINNDKQKMNATQFSI-WFKAKATKAGV-NKSAHG 288
           +V +P    + L     GK   +  F +     +    F   WF   A   G+   + H 
Sbjct: 234 SVVVPRFIREDLGRQLAGKAPADLVFASRAGTPLRVQNFRRDWFDRAAHAVGLSGLTPHE 293

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQA 319
           +R  +A+++  +GA+   + +  G  +    
Sbjct: 294 LRHTAASLAIASGASVKGVQSMLGHASAQMT 324


>gi|157149671|ref|YP_001449679.1| phage integrase family site specific recombinase [Streptococcus
           gordonii str. Challis substr. CH1]
 gi|157074465|gb|ABV09148.1| site-specific recombinase, phage integrase family [Streptococcus
           gordonii str. Challis substr. CH1]
 gi|327460667|gb|EGF07002.1| phage integrase family site-specific recombinase [Streptococcus
           sanguinis SK1]
          Length = 384

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 62/366 (16%), Positives = 117/366 (31%), Gaps = 57/366 (15%)

Query: 11  VTKERTRHGKIIYYF-------RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63
           + K +T+ G I+YY          G  +R              Y + L            
Sbjct: 3   IHKYKTKKG-ILYYVSFYIGLDAYGKKKRHLKRGFKTKKEAKLYEARLEAGVVAPTVSTD 61

Query: 64  PRKKPTTLKWL----ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119
                 T K L     + Y  +    + +  ++  +  +   I    GD    +I+    
Sbjct: 62  KPNPKVTYKELYQEWFNAYVGTVEETT-SSQTKNIYRIHILPI---FGDKFIDQISPLDC 117

Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK-RKTEGIRPWTKED 178
           ++ +  +  T  +  Q  +    +F +A+   Y+  NP  +V  PK +KT     W+ E+
Sbjct: 118 QNFITQKSQTFKNIKQIKSYTSKIFDFAINMNYIDRNPMKNVIMPKIKKTRSDNFWSLEE 177

Query: 179 MQQFKSFWS--EGSQPRLAFEFLLYSGLRCSDSCRAGVQH----------------LQNN 220
           +  F       E  +    F  L +SGLR  +                        +   
Sbjct: 178 LHHFLDIVKETEPFKHFALFRLLAFSGLRKGELYALKWADINFDSNLLNIDKSLGRIDGK 237

Query: 221 IFSIKTQKTGTIITVELPDGFMKLLA-----------MTPIGK--------ETFFINNDK 261
                T+   ++ T+ L D  + L+              P+ K         ++  +NDK
Sbjct: 238 AIEKSTKNESSVRTIYLDDETIDLIKQWRNFYLKEQSQLPLTKLNISDEYMFSYISSNDK 297

Query: 262 -QKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
            + ++A   +        K  +   S HG R   AT+ ++ G          G  +    
Sbjct: 298 IEPLHADYINNVLNRIIKKHKLKPISPHGFRHTHATLMSEIGIDPSNTSKRLGHASSQVT 357

Query: 320 -ETYTK 324
            + YT 
Sbjct: 358 LDVYTH 363


>gi|291526089|emb|CBK91676.1| Site-specific recombinase XerD [Eubacterium rectale DSM 17629]
 gi|291527174|emb|CBK92760.1| Site-specific recombinase XerD [Eubacterium rectale M104/1]
          Length = 336

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 38/264 (14%), Positives = 86/264 (32%), Gaps = 21/264 (7%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS----SAIQFLTSMRVL 143
           +  +   +      ++ ++ +   RKITT+ IR  +   +   +    +      ++   
Sbjct: 75  SERTIKYYRETVQHLLSQT-ETSVRKITTEEIREYLSDYQKLNNCSNVTIDNVRRNISSF 133

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203
           F W   ++Y+  +P   + + K KT      + E +++ +   +E  +     + L  +G
Sbjct: 134 FSWLEEEDYILKSPMRRIHKIKTKTVVKSVISDEGIEKLRDNCNE-KRDLAIIDLLYSTG 192

Query: 204 LRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDG----FMKLLAMTPIGKETFFIN 258
           +R  +     +  +       I   K      V             +       +  F+ 
Sbjct: 193 IRVGELVNLNIDDIDLEGRECIVYGKGDKERRVYFDAKAKVHLKDYINTRTDKNKALFVT 252

Query: 259 NDKQK--MNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKT 315
            D     +  +   I  +    K  + +   H  R+  AT + D G    ++    G   
Sbjct: 253 LDAPHDRLKISGVEIRLRKLGRKLSLERIHPHKFRRSMATRAIDKGMPIEQVQKILGHSQ 312

Query: 316 VDQAETY-------TKGADRIRLG 332
           +D    Y        K A +  L 
Sbjct: 313 IDTTMQYAMVNQNNVKTAHQKYLA 336


>gi|260577378|ref|ZP_05845348.1| integrase family protein [Rhodobacter sp. SW2]
 gi|259020414|gb|EEW23740.1| integrase family protein [Rhodobacter sp. SW2]
          Length = 423

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 41/258 (15%), Positives = 80/258 (31%), Gaps = 15/258 (5%)

Query: 82  AHWGS--LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
             WG+  +   ++     + D +    G     K    +    ++  K TP  A +    
Sbjct: 134 PAWGNKLVTEITKSDVAKFLDFVAE--GRPRPSKEKPNNRARKLQGHKPTPIRANRTGEV 191

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA--FE 197
           +R +F  AV  E+ A NP     R   +    R    +++ +  +        R A    
Sbjct: 192 LRKMFTLAVEWEWRADNPAQGFHRRIEEARE-RFLGPDELARIAAVLDSAEDQRAASIIR 250

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIITVELPDGFMKLLA----MTP 249
             + +G R  +   A  +    +         T K   I  V +    + ++     + P
Sbjct: 251 ICMLTGARVGEVRTARFEQFNLDYVVWSKPASTTKQRKIHRVPISQEVVAIVRQRQLVVP 310

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMA 309
            G    F      +        W K +      +   H +R   A++    GA+   +  
Sbjct: 311 KGNPWLFPGETVGQPVREIRRFWAKVQKDADLPDLHIHDLRHTFASLLVSGGASLEMIGK 370

Query: 310 TYGWKTVDQAETYTKGAD 327
             G   +   + Y    D
Sbjct: 371 LLGHSQMQTTQRYAHLMD 388


>gi|310287230|ref|YP_003938488.1| Integrase/recombinase (XerD/RipX family) [Bifidobacterium bifidum
           S17]
 gi|309251166|gb|ADO52914.1| Integrase/recombinase (XerD/RipX family) [Bifidobacterium bifidum
           S17]
          Length = 377

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 53/354 (14%), Positives = 106/354 (29%), Gaps = 65/354 (18%)

Query: 56  PKREYINSPRKKPTT---LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR-KSGDFDY 111
            K EY  S R    T   LK  +  +        L  ++  ++ S  + +I+   G    
Sbjct: 17  KKLEYERSGRMPSQTTPYLKDWLDRWLDEIVKPRLRPSTLATYRSVVEALIKPAIGGVRL 76

Query: 112 RKITTKHIRSGVE------------SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL 159
            ++  KH R   E             R  + ++A     ++      AVR+  +  NPC 
Sbjct: 77  GRLEPKHFRMMEEYITKGDDTCDPPRRPRSSATAGSAWRTLHKALDDAVREGIIESNPCD 136

Query: 160 SVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC--------- 210
             E P+      +  T     Q  +  ++     L +     +G+R  +           
Sbjct: 137 RAESPRVVYTERKILTPAQAGQLINAEND-VMWHLMWRLAYETGMRQGERLGLTNSEIQL 195

Query: 211 ---------------------------RAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
                                        G +H+    + +  +       + LP+    
Sbjct: 196 IDNVICIVVEWQLKVYNNVKDARDIPSSLGARHVMGKAYLVPPKTNAGRRVIPLPESLAA 255

Query: 244 LLAMTPIG------KETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSAT 295
            L +   G       +  F+  D   +N    +  +K    + G+      H  R  +AT
Sbjct: 256 ELGLYIKGTGRVKPDDLVFVQEDGAPLNRMIETRAWKKALQRVGLPGDFVPHSARHTAAT 315

Query: 296 ISADAGATAHELMATYGWKTVDQAET-YTK--GADRIRLGIKNSRRISSVVDSD 346
             A  G +     +  G   +      YT    AD  +  +     + ++  ++
Sbjct: 316 AMAQLGMSDKVRESIMGHSDISVTNRVYTHVGTADASK-AVNGVETLLALEPAN 368


>gi|298528848|ref|ZP_07016251.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298529857|ref|ZP_07017259.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298509231|gb|EFI33135.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298510284|gb|EFI34187.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
          Length = 394

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 36/236 (15%), Positives = 82/236 (34%), Gaps = 20/236 (8%)

Query: 109 FDYRKITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWA-VRQEYVAINPCLSVERP- 164
            + + +   H+ + +  R  K+ P + I   + +R   ++  + ++ +  +    ++ P 
Sbjct: 144 MELKDLDVLHMDAFLAERNRKYAPETRIHERSGLRGFLRYLYLERQILKKDLSALIQGPP 203

Query: 165 -KRKTEGIRPWTKEDMQQFK----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-- 217
              ++   R  T E ++            G +           GLR  + CR  +  +  
Sbjct: 204 VYAQSRPPRFLTLEQIKTLFQSIDKDRPGGLRSYAMIHLAYSLGLRPGEICRVTLDDILF 263

Query: 218 QNNIFSIKTQKTGTIITVELPDGFMKLL-------AMTPIGKETFFINNDK--QKMNATQ 268
           ++ +  +  +K  +   + LP G ++ L            G      N       +    
Sbjct: 264 RDKLIYLPDRKNSSPAKLPLPQGALRALAAYLAWNRPMDPGHRFLLCNTRTPYGPLTPLT 323

Query: 269 FSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            S    A   +AG+  SA+ +R   A     A A+  E+    G   +  ++ Y  
Sbjct: 324 VSQNISACFRRAGIKGSAYWLRHTYAQNLLQAEASIFEIKEMLGHDIIKTSKRYLH 379


>gi|227327444|ref|ZP_03831468.1| phage integrase family protein [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 337

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 52/315 (16%), Positives = 95/315 (30%), Gaps = 37/315 (11%)

Query: 29  HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLA 88
            G+RIR        F     +        +      +    TLK L+  +  SAH  +L 
Sbjct: 21  KGKRIR------KKFATKGEAIAFEQYAAQNPWQEEKGDRRTLKELVDAWY-SAHGITLK 73

Query: 89  VNSRIS------FESYFDQIIRKSGDFDYRKITTKHIRSGVES----RKHTPSSAIQFLT 138
              +        +E   + + R      + +   K ++ G       ++ TP +    L 
Sbjct: 74  DGLKRQSAMHHAYECMGEPLARDFEAQMFSRYREKRLKGGYARSNRVKEVTPRTLNLELA 133

Query: 139 SMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL--A 195
             R +F    R   +   NP  ++   + +   +   T++ +  F S       P L   
Sbjct: 134 YFRAMFNELTRLGEWKGENPLKNMRPFRTEEAEMAYLTQDQIALFLSECQRHEHPHLQAV 193

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF 255
            +  L +G R S++       L     +    K      V +     + L   P  K   
Sbjct: 194 VKICLSTGARWSEAENLRRSQLSPYKITFTYTKGRRNRAVPISKALYESL---PENKGRL 250

Query: 256 FINNDKQKMNATQFSIWFKAKATKAGVNKSA----HGVRKFSATISADAGATAHELMATY 311
           F +              F++   + G+   A    H +R   A+     G     L    
Sbjct: 251 FTDCYG----------AFRSALERTGIELPAGQLTHVLRHTFASHFMMKGGNILVLQRVL 300

Query: 312 GWKTVDQAETYTKGA 326
           G   +     Y   A
Sbjct: 301 GHTDIKMTMRYAHFA 315


>gi|121611464|ref|YP_999271.1| phage integrase family protein [Verminephrobacter eiseniae EF01-2]
 gi|121556104|gb|ABM60253.1| phage integrase family protein [Verminephrobacter eiseniae EF01-2]
          Length = 378

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 44/295 (14%), Positives = 81/295 (27%), Gaps = 46/295 (15%)

Query: 75  ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESR---KH 128
           +  Y +       LA  S   +    +++ R +        ++T  HIR  V        
Sbjct: 23  VQRYLEHLRVEKRLAARSLTLYRLDLEKLARFAAGLSLPLLQLTDAHIRRFVAQMHSAGR 82

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           +       L+  R  F WA RQ  +  NP L +  PK      +    +   +   F   
Sbjct: 83  SGRGIALILSGWRGFFIWAGRQGLIGRNPVLGIRAPKSPKPLPKALGVDQAMRLADFDGA 142

Query: 189 GS-----------QPRLAFEFLLYSGLRCSDSCRA-------------GVQHLQNNIFSI 224
                        +     E L  SGLR  +                 G   LQ     +
Sbjct: 143 AGAATEADIWLQIRDAAMAELLYGSGLRAGELAGLDAVPNADTERQGRGWVDLQAGEVHV 202

Query: 225 KTQKTGTIITVELPDGFMKLLAM-------------TPIGKETFFINNDKQKMNATQFSI 271
              K     +V +       L                       F+     ++       
Sbjct: 203 -LGKGSKRRSVPMGRAASAALRAWLALRAKPFGAAGAARLDAALFVGRRGARLTTLSIWR 261

Query: 272 WFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             + ++ +AG+      H +R   A+    +      +    G  ++   + YT+
Sbjct: 262 RLRQRSQRAGLPSPVHPHMLRHSFASHLLQSSGDLRAVQELLGHASITSTQVYTR 316


>gi|297539373|ref|YP_003675142.1| integrase family protein [Methylotenera sp. 301]
 gi|297258720|gb|ADI30565.1| integrase family protein [Methylotenera sp. 301]
          Length = 339

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 47/320 (14%), Positives = 99/320 (30%), Gaps = 22/320 (6%)

Query: 16  TRHGKIIYYFRKGH-GRRIR-LPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
            R     ++ R  H G+R++     ++      Y + L  S  ++E +    K+      
Sbjct: 5   KRKDSTCWWVRFTHKGKRVQESTGTNDRQKAQEYEAKLVNSLWEQERLGIKPKRQ--WND 62

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP--- 130
            +  Y       +    S++S   +   + +     + + I    +   +++++      
Sbjct: 63  AVVRYVDE----TQHKASQVSDLYHLRWLDKYLNGVELQVINRDFLEKILKAKQAEGVAN 118

Query: 131 SSAIQFLTSMRVLFKWAV-RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
           S+  + L  +R L + A    E++   P   V       + +R  T+ +  +        
Sbjct: 119 STVNRVLEVVRGLLRKACNEWEWIDRVPA--VRMLPEPKKRVRWITRNEADRLVEALPSH 176

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----NNIFSIKTQKTGTIITVELPDGFMKLL 245
                   F L +GLR S+        +              K    I V L    +  L
Sbjct: 177 LAD--IVRFSLETGLRRSNVTGLQWSQVDLVRRMAWIHPDQAKARKAIPVPLSTVAVLTL 234

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATA 304
                  +T         +       W +    + G+     H +R   A+     G   
Sbjct: 235 RKQIGKHQTHVFTYKGNTITQVNTKTW-RKVLKEVGIESFRWHDLRHTWASWHIQEGTPQ 293

Query: 305 HELMATYGWKTVDQAETYTK 324
           H L    GW + +  + Y  
Sbjct: 294 HILQELGGWSSPEMVQKYAH 313


>gi|254281766|ref|ZP_04956734.1| site-specific recombinase, phage integrase family [gamma
           proteobacterium NOR51-B]
 gi|219677969|gb|EED34318.1| site-specific recombinase, phage integrase family [gamma
           proteobacterium NOR51-B]
          Length = 296

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 42/269 (15%), Positives = 91/269 (33%), Gaps = 31/269 (11%)

Query: 99  FDQIIRKSGDFDYRKITTKHI------RSGVESRKHTPSSA---------------IQFL 137
               + + GD     IT   +       +     K    SA                +F+
Sbjct: 25  IQFWVEEFGDQPIDAITEDAVDQALVRLAKRGKLKAGRGSARRAVPTGKPLAGSTINRFI 84

Query: 138 TSMRVLFKWAVRQEYVAIN---PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ--P 192
           +++  +FK+A R   +  +   P   +E+     +  + +  E++ +  +      Q   
Sbjct: 85  STLSGIFKYARRVRALPRSHTPPTRGIEKAPEPVDPEKYFRPEEVDKLMAVARVVDQKWR 144

Query: 193 RLAFEFLLY--SGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLLAMT 248
           +L    +L   +GLR  +      + +  +    S+ T K G      L D  +  L   
Sbjct: 145 KLPALIILGFHTGLRVGNLLDLKWEDVDLDERTLSVATTKNGRPHIAALTDRCITELQKL 204

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHEL 307
           P G  +  +    +      +   ++    +AG   ++ H +R    +  A AG +  ++
Sbjct: 205 PAGSPSDLVFRSYRTDKPFNYRDLWQKVCDEAGFEGRTFHWLRHGCGSALASAGVSQAQI 264

Query: 308 MATYGWKTVDQAETYTKGADRIRLGIKNS 336
           M   G +T+  +  Y       R  +   
Sbjct: 265 MQVMGHRTLVASARYMHSNVEDRRAVVGR 293


>gi|210615472|ref|ZP_03290599.1| hypothetical protein CLONEX_02815 [Clostridium nexile DSM 1787]
 gi|210150321|gb|EEA81330.1| hypothetical protein CLONEX_02815 [Clostridium nexile DSM 1787]
          Length = 387

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 40/273 (14%), Positives = 83/273 (30%), Gaps = 45/273 (16%)

Query: 90  NSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVR 149
           +++ S+ +++ +I  + G      +    ++      K T ++       +  +   AV 
Sbjct: 93  STKGSYITHYKRIQEELGWRKLTSLNLIVMQEAFNKLK-TDNARKNSKKILVDMLNRAVD 151

Query: 150 QEYVAINPCLSVERP--KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCS 207
            + +  N    +     K + +  R  T  + + F      G+     F   L +GLR  
Sbjct: 152 TDLLVKNVAKQINTVIAKEEKKERRVLTIRETELFLEQAK-GTFYENLFILALETGLRVG 210

Query: 208 DSCRAGVQHLQ--NNIFSIKT-----QKTGTII-------------TVELPDGFMKLLAM 247
           +      + +     +  +K       K G  +             T+ L    +  L  
Sbjct: 211 ELSALQWEDIDFKKKVIHVKHTLCYFSKNGKYVFEMHDTKTNNGKRTIPLTAKAINSLKC 270

Query: 248 TPIGKETFFI------------------NNDKQKMNATQFSIWFKAKATKAGVNKSA--- 286
             + K+   +                  N   Q+    Q          KAG++ S    
Sbjct: 271 QKLQKQEIILKGKTAKEEFQNLVFVTKNNQPTQQFLINQCMQLVIQNMNKAGIDFSPFTL 330

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQA 319
           H +R   AT + + G     L    G  T+   
Sbjct: 331 HTLRHTFATRAIECGMNPKTLQKLLGHGTLQMT 363


>gi|171741671|ref|ZP_02917478.1| hypothetical protein BIFDEN_00757 [Bifidobacterium dentium ATCC
           27678]
 gi|283455017|ref|YP_003359581.1| phage integrase [Bifidobacterium dentium Bd1]
 gi|171277285|gb|EDT44946.1| hypothetical protein BIFDEN_00757 [Bifidobacterium dentium ATCC
           27678]
 gi|283101651|gb|ADB08757.1| phage integrase [Bifidobacterium dentium Bd1]
          Length = 367

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 51/339 (15%), Positives = 107/339 (31%), Gaps = 39/339 (11%)

Query: 11  VTKERTRHGKIIYY--FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
           +    T+ G   Y   +R     +              Y++ +T      +YI+     P
Sbjct: 3   IYSYNTKSGDKRYRVTYRDPDHSQRTKRGFRRRKDAQDYLARMTTYIADNDYID-----P 57

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFD-----QIIRKSGDFDYRKITTKHIRSGV 123
              K L+ ++             +  + +  +      +    G+ +   I    I++ V
Sbjct: 58  NAGKTLVCQF-ADTWLKGKKNVVKPKYYADLECSWRVHVCNAWGNREIASIRHSEIQTWV 116

Query: 124 ESRKHTPSSAIQFLT--SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
                  S+ I       ++ +   AVR   +  NP    + P+++ +     T   +  
Sbjct: 117 SELAKKRSATITIRAHGVLKGVLDLAVRDGSIRRNPADGCQLPRKQRKERTYLTPAQV-- 174

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-------------- 227
                + G+   L      + GLR  ++    V+H+      ++ +              
Sbjct: 175 IDLAHAAGTYQALILTLG-FCGLRWGEAAALRVKHVDTQNNRLRVRLSWVRSGKKHFEGA 233

Query: 228 -KTGTIITVELPDGFMKLLAMTPIGK---ETFFINNDKQKMNATQFSI--WFKAKATKAG 281
            KT  +  V +PD  M  +     GK   +  F       +         W+      +G
Sbjct: 234 PKTWEVRDVPVPDQVMSAIKEQCEGKGPEDLVFTAPSGGHLREQSAKNHGWYARALRDSG 293

Query: 282 VN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
           V   + H +R  +A+I+  +GA    +    G K     
Sbjct: 294 VPTLTCHDLRHTAASIAISSGANVKAVQRMLGHKNAAMT 332


>gi|323170034|gb|EFZ55690.1| integrase [Escherichia coli LT-68]
          Length = 285

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 40/255 (15%), Positives = 81/255 (31%), Gaps = 10/255 (3%)

Query: 74  LISEYRK-SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132
           LI  + K          N+R+      + +           + T+ +R     +   PS+
Sbjct: 23  LIDLWWKYHGQLMKSGHNTRLKLLRLSEAMDDPCVHKLNTTMLTE-LRVSRIEQGIQPST 81

Query: 133 AIQFLTSMRVLFKWAVRQEY-VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
             + + ++  +F   +   + +  NP   ++  K     +   +K +  Q     +E   
Sbjct: 82  INREIGALSAMFTALISSGHFLNDNPVQGLKGMKVNEREMGYLSKSECVQLLDALAENPD 141

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251
            RLA E LL +G R  +      + + +   +    K     TV + +   +   +   G
Sbjct: 142 ERLAVEILLSTGARWGEVAALEQRRVLHCRITFSKTKNSKNRTVPISESLFE--KIKKRG 199

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATY 311
            +  F   D      +      K  A      ++ H +R   A+     G     L    
Sbjct: 200 GKLVFPTLD-----YSLVRDVIKTVAPDVPDGQAVHALRHTFASHFMMNGGNILTLQKIL 254

Query: 312 GWKTVDQAETYTKGA 326
           G   +     Y   A
Sbjct: 255 GHAKIQTTMIYAHLA 269


>gi|157960209|ref|YP_001500243.1| tyrosine recombinase XerC [Shewanella pealeana ATCC 700345]
 gi|157845209|gb|ABV85708.1| tyrosine recombinase XerC [Shewanella pealeana ATCC 700345]
          Length = 304

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/272 (12%), Positives = 94/272 (34%), Gaps = 21/272 (7%)

Query: 71  LKWL--ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVE 124
           ++WL     Y ++     ++  +  ++     ++ +   + D     +  + + + + + 
Sbjct: 10  VRWLTDFERYLRTER--QVSAYTVRNYLFELKRVEKLFSETDSWLSLQHESLQAMLAKLH 67

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR---PWTKEDMQQ 181
            +  +P S    L+S++  +++ +R++ + +NP +S+  PK+     +     +   +  
Sbjct: 68  RKGLSPRSLSLTLSSLKQFYEFLLREQQIKVNPAISLTAPKQGKPLPKNMDVDSVSHLLD 127

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240
                    + +   E    SGLR ++     V  +Q +   +K   K      V +   
Sbjct: 128 LDGDDPLSLRDKAIMELFYSSGLRLAELAALNVGDIQFSQAQVKVLGKGSKERIVPIGKL 187

Query: 241 FMKLL-------AMTPIGKETFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSAHGVRK 291
            +  +              +  F+    +++                  G+    H +R 
Sbjct: 188 ALTAINQWLDIKRDIACEDDALFVTAKGKRLAHRSIQARLAKWGQEQAIGIKVHPHKLRH 247

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYT 323
             AT   ++ A    +    G   +   + YT
Sbjct: 248 SFATHMLESSADLRAVQELLGHANLSTTQVYT 279


>gi|221200783|ref|ZP_03573824.1| phage integrase [Burkholderia multivorans CGD2M]
 gi|221206979|ref|ZP_03579990.1| phage integrase [Burkholderia multivorans CGD2]
 gi|221173053|gb|EEE05489.1| phage integrase [Burkholderia multivorans CGD2]
 gi|221179355|gb|EEE11761.1| phage integrase [Burkholderia multivorans CGD2M]
          Length = 403

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 51/305 (16%), Positives = 98/305 (32%), Gaps = 25/305 (8%)

Query: 44  IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-I 102
           +     A            +  +K  T+  L  ++ +         +++  +++  ++ +
Sbjct: 73  MAQDWLAEVRRGGDPGGDRAEARKAPTIAELCKKFMEDYSRKRNKPSTQDGYQAVINRNV 132

Query: 103 IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA--INPCLS 160
           I   G     ++    I   +E   + P+ A +    +R +F  +    Y     NPC  
Sbjct: 133 IPLLGRKKVHEVKRPDIAGLMEKLSYKPTEANKTFGVLRKMFNLSEVWGYRPDGTNPCRH 192

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP----------RLAFEFLLYSGLRCSDSC 210
           V       E       E ++ F+      ++           RL FEF      R S+ C
Sbjct: 193 VPMYPPGKETRLIVDDELVRVFRQLEKIEAEELENYVIPLSIRLQFEFA----GRRSEIC 248

Query: 211 RAGVQHLQNN--IFSIKTQKTGTIITVELPDGFMKLLAMTPI-GKETFFINNDKQKMNAT 267
           +     +            KTG +    + +   +LL+  P      + +   K      
Sbjct: 249 KLEWDWVDLEHRRVVWPDSKTGGMSK-PMSEEAYRLLSTAPRLEGCRYVLPKPKDPTKHL 307

Query: 268 QFSI----WFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
            +      W +        +   HG+R  SAT  A++G      M     KTV Q   Y 
Sbjct: 308 TYGQHYCGWCRVLKAADVPHVGTHGIRHRSATDIANSGVPIKVGMELTQHKTVAQFMHYV 367

Query: 324 KGADR 328
              D+
Sbjct: 368 HTEDK 372


>gi|163839844|ref|YP_001624249.1| XerC/XerD family integrase [Renibacterium salmoninarum ATCC 33209]
 gi|162953320|gb|ABY22835.1| integrase, XerC/XerD family [Renibacterium salmoninarum ATCC 33209]
          Length = 308

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 44/274 (16%), Positives = 90/274 (32%), Gaps = 28/274 (10%)

Query: 85  GSLAVNSRISFESY---FDQIIRKSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFLT 138
            + + ++  ++ +           +G     +I    IR  +  +       S+  +   
Sbjct: 25  RARSEHTIRAYSADVESLMYYAIAAGVRSIDEIDLATIREWLGEQSSDGLARSTLARRAA 84

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS--------FWSEGS 190
           S R L  WA+R+E ++++P L ++ PKR+        +  M +  +          +   
Sbjct: 85  STRTLMSWALREELISVDPTLRLKAPKRQKTLPGVLQQNQMARMLADLASAAEEGSAAAL 144

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAM-T 248
           +     E L  +GLR  +     +  L       +   K     +V       + L    
Sbjct: 145 RDLAIVELLYAAGLRVGELAGLDLDDLDFERRTVVVLGKGNKERSVPFGQPAARALQAWL 204

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-----------KSAHGVRKFSATIS 297
             G+  F+       +           +  ++ V             S H +R  +AT  
Sbjct: 205 QTGRPAFYREGSGAALFLGTRGGRIDQRQIRSVVGSRFVALGDTSATSPHALRHTAATHL 264

Query: 298 ADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330
            D GA    +    G  ++   + YT    DR+R
Sbjct: 265 LDGGADLRAVQEILGHSSLATTQIYTHVSVDRLR 298


>gi|62550837|emb|CAH64760.1| site-specific recombinase [uncultured bacterium]
 gi|194337964|emb|CAQ51376.1| InH class 1 integrase [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 337

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 40/301 (13%), Positives = 90/301 (29%), Gaps = 52/301 (17%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS-S 132
           ++ + R+   +   ++ +  ++  +    IR  G      + +  + + +    +    S
Sbjct: 16  VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
                 ++  L  + V+     +     + RP+         T +++ +   F  EG   
Sbjct: 76  VSTHRQALAALLFFYVKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILGFL-EGEH- 133

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250
           RL  + L  +G+R S+  +  V+     +    ++  K      + LP+     L     
Sbjct: 134 RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLS 193

Query: 251 GKETFFINN---------------------------------------------DKQKMN 265
               +++ +                                              +  M 
Sbjct: 194 RARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMY 253

Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
              F   FK    +AG+ K  + H +R   AT    +G     +    G   V     YT
Sbjct: 254 DQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 313

Query: 324 K 324
            
Sbjct: 314 H 314


>gi|46198918|ref|YP_004585.1| DNA integration/recombination/invertion protein [Thermus
           thermophilus HB27]
 gi|46196542|gb|AAS80958.1| DNA integration/recombination/invertion protein [Thermus
           thermophilus HB27]
          Length = 313

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 46/242 (19%), Positives = 89/242 (36%), Gaps = 20/242 (8%)

Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVR-QEYVAINPCLSVERPKRKTEGI- 171
            + + +R+ +   +  P     FL ++R  +++    +   A +P   + RPK       
Sbjct: 70  PSPEAVRALLLRERWAPRRVQGFLAALRSYYRYLREVKGEAASDPTEGIGRPKAGRRLPL 129

Query: 172 RPWTKE---DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS----I 224
            P  +E    ++ F+          LA  FL  +GLR S++     +++     S     
Sbjct: 130 HPGPEELKRFLEAFREEKEAALLEALAR-FLYGTGLRISEALSLKGRNVVLEGGSPVAVR 188

Query: 225 KTQKTGTIITVELPDGFMKLLAMTPI--GKETFFINNDKQKMNATQFSIW----FKAKAT 278
              K      V L     ++L       G    F  +  ++      + W    F+  A 
Sbjct: 189 VVGKGNKERLVPLSKTAREVLEALGRLQGNVNIFTFSQGRRKGHVPSARWVEAKFREAAL 248

Query: 279 KAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335
           +AG++    + H +R   AT+  + G     +    G +++   + Y   A R RL    
Sbjct: 249 RAGLDPRRFTPHKLRHAYATLLVERGVELDAVKDLLGHESIATTQIYLH-ASRERLREAA 307

Query: 336 SR 337
           SR
Sbjct: 308 SR 309


>gi|296444774|ref|ZP_06886737.1| integrase family protein [Methylosinus trichosporium OB3b]
 gi|296257722|gb|EFH04786.1| integrase family protein [Methylosinus trichosporium OB3b]
          Length = 424

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 56/374 (14%), Positives = 120/374 (32%), Gaps = 51/374 (13%)

Query: 19  GKIIYY--FRKGHGRRIRLPYPHE-----STFIPAYMSALTGSTPKREYI--NSPRKKPT 69
           GK  Y+  +R   G R R+                 M+AL G     + +   S R+   
Sbjct: 37  GKRTYFADYRNADGSRKRMTLGRHSVITCEEARKLAMAALGGVVKGADPLTERSSRRAAL 96

Query: 70  TLKWLISEYRKSAH-------WGSLAVNSR--ISFESYFDQIIRKSGDFDYRKITTKHIR 120
           T+  L   Y ++A        +      S   +        I+   G     ++T   ++
Sbjct: 97  TVSDLCDLYLEAADKGLVTTRFHKPKRASTLAVDRGRIGRHIVPLIGSKKADRLTRADVQ 156

Query: 121 SGVESRKHT-------------------PSSAIQFLTSMRVLFKWAVRQEYV-AINPCLS 160
              +                          +A + +     ++ WA R+ +V   +P   
Sbjct: 157 RMTDDIAAGKTAGTFKTKLRGKAVVTGGAGTARRVVELFGGIWTWAERRGHVVGRSPTHG 216

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR----LAFEFLLYSGLRCSDSCRAGVQH 216
           VE  K   +  R  +  ++ +  +   E  +       A   +L +G R  +        
Sbjct: 217 VETQKGDPK-DRILSPAELARLGAVLKEKEEALPFAVAAVRLILLTGARREEIVGLRWSE 275

Query: 217 LQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274
                +   ++  KTG  +   +    + +L+  P  +  F   N   K  A        
Sbjct: 276 FDAAGSCLRLEQTKTGRSMR-PIGSPVVAILSALPRDENEFVFPNRSGKRPAD-LKKRIA 333

Query: 275 AKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADRIRLG 332
                AGV +  +H  R+  +T + + G +     +  G  +    A  Y +  D     
Sbjct: 334 ELFDAAGVDDARSHDCRRTFSTTADELGYSEATAGSIIGHASRGVTARHYIRRPDAAL-- 391

Query: 333 IKNSRRISSVVDSD 346
           ++ + +++ +++  
Sbjct: 392 VEAADKVAKLIERR 405


>gi|15889883|ref|NP_355564.1| site-specific tyrosine recombinase XerC [Agrobacterium tumefaciens
           str. C58]
 gi|34222928|sp|Q8UC70|XERC_AGRT5 RecName: Full=Tyrosine recombinase xerC
 gi|15157830|gb|AAK88349.1| site-specific recombinase [Agrobacterium tumefaciens str. C58]
          Length = 315

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 49/275 (17%), Positives = 85/275 (30%), Gaps = 29/275 (10%)

Query: 85  GSLAVNSRISFESYFD--------QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI-- 134
             LA N+  ++E             I R +   D   +    +R+ + +R+   + A   
Sbjct: 31  RRLADNTVEAYERDTRQFLRFLTGYIGRPAAIRDIADLRPVDLRAFLANRRKEGAGARSL 90

Query: 135 -QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM-------QQFKSFW 186
            + L  +R L     ++  V      ++  PK+     +P T            Q     
Sbjct: 91  GRHLAGLRSLLHHLQKKGLVNAAGATAMRAPKQPKSLPKPLTDRQALKITTAEAQLNEEP 150

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELP------- 238
              ++       L   GLR S++             S++ T K      V L        
Sbjct: 151 WIAARNAAVLSLLYGCGLRISEALGLTPADFPPGTRSLRITGKGNKTRIVPLLAVVTEAV 210

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATI 296
           D + KL        E  F+     K+         +      G+  N + H +R   AT 
Sbjct: 211 DTYRKLCPYALAADEPMFLGARGGKLQPAIIQREMQKLRGAFGLPENATPHALRHSFATH 270

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
               G     +    G  ++   + YT G D  RL
Sbjct: 271 LLAGGGDLRTIQELLGHASLSTTQVYT-GVDTARL 304


>gi|254777686|ref|ZP_05219202.1| phage integrase family protein [Mycobacterium avium subsp. avium
           ATCC 25291]
          Length = 361

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 65/360 (18%), Positives = 109/360 (30%), Gaps = 41/360 (11%)

Query: 25  FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL-ISEYRKS-A 82
           +    GRR   P    +        +L  +   R+    P      +  L    Y K+  
Sbjct: 2   YHGPDGRRYTAPKTFLTEKDARGWLSLRQAEIIRKAWVPPEADEQPVPKLTFETYSKTWM 61

Query: 83  HWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESR-KHTPSSAIQFLTSM 140
               L   +R  +     D I+   G      IT   +R+       +TP+        +
Sbjct: 62  AQRDLKDRTRQHYAKLLGDHIVPTFGGLPIASITADDVRAWHAKLGANTPTLRAHCYGLL 121

Query: 141 RVLFKWAVRQEYVAINPC--LSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEF 198
           R +   A+    + +NPC        +R  + IRP T +++        E  + R     
Sbjct: 122 RTIMGTALSDGKIKVNPCVIRGAGSARRVHK-IRPATLDEIATIAEEMPE--RYRAMVLL 178

Query: 199 LLYSGLRCSDSCRAGVQHL-----------------------QNNIFSIKTQKTGT-IIT 234
             +  LR  +      + +                           F I T K+      
Sbjct: 179 AAWCALRFGELTELRRRDIIIVDADDPDDTYGVVRVERAVVRVEQGFQITTPKSDAGRRD 238

Query: 235 VELPDGFMKLLA------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAH 287
           VE+P   +  +       + P      F       +        F    + A  +    H
Sbjct: 239 VEIPPHLLPAIRDHLDRFVEPDKDALLFPAVHGGHLAPASLYRQFYRARSVAKRDDLRWH 298

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD-RIRLGIKNSRRISSVVDSD 346
            +R   A ++A  GAT  ELMA  G  T   A  Y   A  R R   +   ++ +V  S 
Sbjct: 299 DLRHSGAVLAAATGATLAELMARLGHSTPQAAMRYQHAAQGRDRQIARLLSKLVAVEPSP 358


>gi|115334655|ref|YP_764501.1| DNA integration/recombination protein [Geobacillus phage GBSV1]
 gi|155042957|ref|YP_001425624.1| DNA integration/recombination /inversion [Bacillus virus 1]
 gi|297528601|ref|YP_003669876.1| integrase [Geobacillus sp. C56-T3]
 gi|84688605|gb|ABC61301.1| DNA integration/recombination protein [Geobacillus phage GBSV1]
 gi|115529861|gb|ABJ09640.1| DNA integration/recombination /inversion [Bacillus virus 1]
 gi|297251853|gb|ADI25299.1| integrase family protein [Geobacillus sp. C56-T3]
          Length = 394

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 48/309 (15%), Positives = 103/309 (33%), Gaps = 54/309 (17%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSM----RVL 143
            +++  + +     ++R  G+   + +T K  +  +   K     A   L  +    R++
Sbjct: 84  KISTIRARKHELGHLMRYFGNLKLKDVTRKMYQDMLLDLKKK-GYADNTLDGIHTTGRMI 142

Query: 144 FKWAVRQEYVAINPCLSVERPKRKT---------EGIRPWTKEDMQQFKSFWSEG--SQP 192
           FK A+  E +  NP    + PK+K          + ++   K ++  F     E   +  
Sbjct: 143 FKKAMELELINSNPTEYAKVPKQKKTVEDIESGNKDMKFLEKHELALFLKTAQEHGLAMD 202

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-------------------GTII 233
            + F  L Y+G+R  +      + +     +I   KT                   G+I 
Sbjct: 203 YVVFSTLAYTGMRLGELLALQWKDINFKEHTIAITKTLYSPRNNERYYQLLPPKTQGSIR 262

Query: 234 TVELPDGFMKLLAMTPIGKETF--------------FINNDKQKMNATQFSIWFKAKATK 279
           T+++    + LL      +                 F           +  I  K     
Sbjct: 263 TIKVDPNIISLLKKHKAEQNEIKLRMGELYHDLGFVFARPSGFPEVPKKIEIRMKRLLRI 322

Query: 280 AGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGIKNS 336
           A ++K  + H +R    ++  +AG    E+    G   ++     Y        L  + S
Sbjct: 323 ANIHKHVTPHSLRHTHTSLLIEAGVGIKEIQQRLGHADIETTMNIYAHLT--KDLEERAS 380

Query: 337 RRISSVVDS 345
           ++ S ++ +
Sbjct: 381 QKFSELMSN 389


>gi|260868071|ref|YP_003234473.1| putative integrase [Escherichia coli O111:H- str. 11128]
 gi|257764427|dbj|BAI35922.1| putative integrase [Escherichia coli O111:H- str. 11128]
          Length = 426

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 45/317 (14%), Positives = 97/317 (30%), Gaps = 64/317 (20%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK-ITTKHIRSGVESR-- 126
           T+K L  ++        +A  S  ++ +    I+   G+ +    I  + +    +    
Sbjct: 80  TIKELAEKFLALKE-NEVAKTSLNTYRAVIKNILSIIGEKNLASSINKEKLLEVRKELLT 138

Query: 127 --------------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
                           +  +   ++T++  +F++ V   Y+A NP   +   K       
Sbjct: 139 GYQIPKSNYIVTQPGRSAVTVNNYMTNLNAVFQFGVDNGYLADNPFKGISPLKESRTIPD 198

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK----- 225
           P ++E+  +         Q +  +   +Y+G+R  + C  G + +   N    I+     
Sbjct: 199 PLSREEFIRLIDAC-RNQQAKNLWCVSVYTGVRPGELCALGWEDIDLKNGTMMIRRNLAK 257

Query: 226 --------TQKTGTIITV--ELPDGFMKLLAMTPIGKETFF------------------- 256
                      T  +I +     D     + +T + KE                      
Sbjct: 258 DRFTVPKTQAGTNRVIHLIKPAIDALRSQMTLTRLSKEHIIDVHLKEYGRTEKQKCTFVF 317

Query: 257 -------INNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELM 308
                  + N             + A   +AG+ ++ ++  R   A  S  AGA    + 
Sbjct: 318 QPEVSARVKNYGDHFTVDSIRQMWDAAIKRAGLRHRKSYQSRHTYACWSLTAGANPAFIA 377

Query: 309 ATYGWKTVDQA-ETYTK 324
              G        + Y K
Sbjct: 378 NQMGHADAQMVFQVYGK 394


>gi|256377530|ref|YP_003101190.1| integrase family protein [Actinosynnema mirum DSM 43827]
 gi|255921833|gb|ACU37344.1| integrase family protein [Actinosynnema mirum DSM 43827]
          Length = 324

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 49/309 (15%), Positives = 103/309 (33%), Gaps = 42/309 (13%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYF--------DQIIRKSGDFDYRKITTKHIRSGVESRK 127
             + ++      + ++  ++            + + R+ G+     +T  H+RS      
Sbjct: 8   EAFFQARRPRKDSPHTTAAYRRDLAGVNALLGEVVGREVGELRVEDLTGAHLRSAFGVFA 67

Query: 128 HT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED------- 178
            +   SS ++  ++      + V ++ V  NP  +V RPK      +P   ED       
Sbjct: 68  DSHAKSSVLRAWSTWNQFLTFLVAEDLVPGNPMGAVARPKTPPLVPKPLRGEDTPERLLA 127

Query: 179 ---MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT---QKTGTI 232
                  K+      +  L     L +GLR  +     +  +       +     K    
Sbjct: 128 AAAEGARKARDPWPERDVLVLALGLVAGLRSVEMRTLTLASVVGRSGERRLHVLGKGNRD 187

Query: 233 ITVELPDG--------FMKLLAMTPIGK----ETFFINNDKQKMNATQFSIWFKAKATKA 280
            +V +                   P G+         +   + +         ++    A
Sbjct: 188 RSVPIEPAMERVVDEYLASCRKRFPQGRFDRGSALLRDRHGEPIGRGGLEYLVRSCFRWA 247

Query: 281 GVN------KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIRLGI 333
           G++       + H +R   AT  A+ GATA E+MA  G  ++  ++ Y +  A   R  +
Sbjct: 248 GLHDRVPSGANLHALRHTFATRLAEDGATASEIMALLGHASLATSQNYIEATAREQRSAV 307

Query: 334 KNSRRISSV 342
             +R  +S+
Sbjct: 308 AGNRTYASL 316


>gi|229545565|ref|ZP_04434290.1| bacteriophage integrase [Enterococcus faecalis TX1322]
 gi|256853373|ref|ZP_05558743.1| site-specific recombinase [Enterococcus faecalis T8]
 gi|307291735|ref|ZP_07571607.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0411]
 gi|229309305|gb|EEN75292.1| bacteriophage integrase [Enterococcus faecalis TX1322]
 gi|256711832|gb|EEU26870.1| site-specific recombinase [Enterococcus faecalis T8]
 gi|306497187|gb|EFM66732.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0411]
          Length = 392

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 62/392 (15%), Positives = 123/392 (31%), Gaps = 72/392 (18%)

Query: 1   MTPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60
           M    R    +T      GKI +YF+     R       E+    AY+        K++ 
Sbjct: 1   MENMSRFKKHITAT----GKITWYFQAFRTTRRGFNSKREAQL--AYLEMEKQHRNKQKR 54

Query: 61  INS-PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119
           + S  +    + KW   EY +S +     V +    E     + R  G      ++++ +
Sbjct: 55  LASNDKFSVVSQKWF--EYYRSLN--EQKVATYDKREEQVKILNRWIGGKKLSSLSSEEL 110

Query: 120 RSGVESRKHT----------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK-- 167
           +  +   K             +S    +  + ++F +  ++  +  NP   V+ PK +  
Sbjct: 111 QKFLFILKEKGIDGVNVGYAKNSLQSLVQVLNMVFNYCKKKNLINENPMKFVKMPKYQLS 170

Query: 168 ---------TEGIRPWTKEDMQQFKSF--WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216
                    +   +  T ++++ F ++    E     + F  L Y+G   S++     Q 
Sbjct: 171 LKDLKESVNSLEDKFLTVDELRAFLNYGIVYEELPMSVLFHVLFYTGCCVSEALALQPQD 230

Query: 217 LQNNI-----------------FSIKTQKT-GTIITVELPD-------GFMKLLAMTPIG 251
           +                     F I+T KT  +   V +           + +L  T   
Sbjct: 231 IDFERNEILFYKQTAVKGKSKDFRIETTKTVSSARRVPVTPLVMEKLQELIDVLNKTKRN 290

Query: 252 -----KETFFI-----NNDKQKMNATQFSIWFKAKATKAGVNKSAHG--VRKFSATISAD 299
                 ET+                   +   K    + G+NK  H    R   A++ A+
Sbjct: 291 SNFVVDETYLFVYLDPGKRGVPYRREYVNDHVKRCVERCGINKDFHTHLARHTMASLVAE 350

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRL 331
              +   L    G      ++ Y       +L
Sbjct: 351 Y-CSWDVLKDRLGHTDSTTSKIYRHLTSTEKL 381


>gi|237719564|ref|ZP_04550045.1| integrase [Bacteroides sp. 2_2_4]
 gi|253565904|ref|ZP_04843358.1| integrase [Bacteroides sp. 3_2_5]
 gi|254882935|ref|ZP_05255645.1| integrase [Bacteroides sp. 4_3_47FAA]
 gi|282859997|ref|ZP_06269081.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
 gi|282877475|ref|ZP_06286295.1| site-specific recombinase, phage integrase family [Prevotella
           buccalis ATCC 35310]
 gi|282880866|ref|ZP_06289559.1| site-specific recombinase, phage integrase family [Prevotella
           timonensis CRIS 5C-B1]
 gi|294777530|ref|ZP_06742981.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
 gi|301312112|ref|ZP_07218033.1| mobilizable transposon, int protein [Bacteroides sp. 20_3]
 gi|304382591|ref|ZP_07365085.1| integrase [Prevotella marshii DSM 16973]
 gi|317478196|ref|ZP_07937364.1| phage integrase [Bacteroides sp. 4_1_36]
 gi|317504497|ref|ZP_07962474.1| mobilizable transposon integrase [Prevotella salivae DSM 15606]
 gi|5453489|gb|AAB53787.2| integrase [Bacteroides fragilis]
 gi|229451424|gb|EEO57215.1| integrase [Bacteroides sp. 2_2_4]
 gi|251945008|gb|EES85446.1| integrase [Bacteroides sp. 3_2_5]
 gi|254835728|gb|EET16037.1| integrase [Bacteroides sp. 4_3_47FAA]
 gi|281300399|gb|EFA92748.1| site-specific recombinase, phage integrase family [Prevotella
           buccalis ATCC 35310]
 gi|281305248|gb|EFA97315.1| site-specific recombinase, phage integrase family [Prevotella
           timonensis CRIS 5C-B1]
 gi|282587203|gb|EFB92424.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
 gi|294448598|gb|EFG17147.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
 gi|300829900|gb|EFK60549.1| mobilizable transposon, int protein [Bacteroides sp. 20_3]
 gi|304336216|gb|EFM02458.1| integrase [Prevotella marshii DSM 16973]
 gi|315664395|gb|EFV04085.1| mobilizable transposon integrase [Prevotella salivae DSM 15606]
 gi|316905648|gb|EFV27434.1| phage integrase [Bacteroides sp. 4_1_36]
          Length = 372

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 54/265 (20%), Positives = 95/265 (35%), Gaps = 26/265 (9%)

Query: 84  WGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRSGVESRKHTP-----------S 131
           +  LA    I ++  +       +G   + ++     R  +E     P           +
Sbjct: 100 FKGLADRKNIKWQHVYKHFQRFVNGKCTFEEVDVDLCRKFMEYLLDAPQSIHTNQKLHIN 159

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           SA  + ++ R +   A R   +  NP   ++R +         ++E++ +      E   
Sbjct: 160 SAAGYWSTFRAVLHTAYRDRKIKENPNGFLDRIECIPTIREHLSQEELIRLAETPCEEEV 219

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQ---NNIFSIKT--QKTGTIITVELPDGFMKLLA 246
            + AF F   +GLR SD  +   Q +Q   N    + T  QKT  I+   + D    LL 
Sbjct: 220 LKKAFLFACLTGLRKSDIRQLTWQQIQPYTNGRMFVTTRMQKTKEIVHNPISDEAYGLLG 279

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATA 304
                 E     + K KM       W     T AG+ K  + H  R    ++  + G   
Sbjct: 280 E---RGEGLIFEDFKDKMLQGPLQRWL----TAAGITKKITFHCTRHSFGSLHVEMGTDM 332

Query: 305 HELMATYGWKTVDQAETYTKGADRI 329
             + A  G K +   + Y+K A + 
Sbjct: 333 AVIQAYLGHKNITTTQIYSKIAAQQ 357


>gi|331673161|ref|ZP_08373929.1| putative lambdoid prophage Qin defective integrase [Escherichia
           coli TA280]
 gi|331069359|gb|EGI40746.1| putative lambdoid prophage Qin defective integrase [Escherichia
           coli TA280]
          Length = 431

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 44/317 (13%), Positives = 96/317 (30%), Gaps = 64/317 (20%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK-ITTKHIRSGVESR-- 126
           T+K L  ++        +A  S  ++ +    I+   G+ +    I  + +    +    
Sbjct: 85  TIKELAEKFLALKE-TEVAKTSLNTYRAVIKNILSIIGEKNLASSINKEKLLEVRKELLT 143

Query: 127 --------------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
                           +  +   ++T++  +F++ V   Y+  NP   +   K       
Sbjct: 144 GYQIPKSNYIVTQPGRSAVTVNNYMTNLNAVFQFGVDNGYLPDNPFKGISPLKESRTIPD 203

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK----- 225
           P ++E+  +         Q +  +   +Y+G+R  + C  G + +   N    I+     
Sbjct: 204 PLSREEFIRLIDAC-RNQQAKNLWCVSVYTGVRPGELCALGWEDIDLKNGTMMIRRNLAK 262

Query: 226 --------TQKTGTIITV--ELPDGFMKLLAMTPIGKETFF------------------- 256
                      T  +I +     D     + +T + KE                      
Sbjct: 263 DRFTVPKTQAGTNRVIHLIKPAIDALRSQMTLTRLSKEHIIDVHLREYGRTEKQKCTFVF 322

Query: 257 -------INNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELM 308
                  + N             + A   +AG+ ++ ++  R   A  S  AGA    + 
Sbjct: 323 QPEVSARVKNYGDHFTVDSIRQMWDAAIKRAGLRHRKSYQSRHTYACWSLTAGANPAFIA 382

Query: 309 ATYGWKTVDQA-ETYTK 324
              G        + Y K
Sbjct: 383 NQMGHADAQMVFQVYGK 399


>gi|295110203|emb|CBL24156.1| Site-specific recombinase XerD [Ruminococcus obeum A2-162]
          Length = 322

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 36/248 (14%), Positives = 83/248 (33%), Gaps = 14/248 (5%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS----SAIQFLTSMRVL 143
           +  +   ++   + ++ +      RKITT+ IR+ +   +        +      ++   
Sbjct: 61  SDRTLQYYKVTVEHLLSQI-KTSVRKITTEEIRAYLADYQKNSKCSNVTIDNIRRNISSF 119

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203
           F W   ++Y+  +P   + + + KT      T E +++ +    E  +     + L  +G
Sbjct: 120 FSWLEEEDYILKSPMRRIHKIRTKTVVKSVITDEGIEKLRDNCME-IRDLAIIDLLYSTG 178

Query: 204 LRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDG----FMKLLAMTPIGKETFFIN 258
           +R  +     +  +       +   K      V          M+ +A         F+ 
Sbjct: 179 IRVGELVNLNIDDIDLEGRECVVYGKGDKERRVYFDAKSKVHLMRYIAERKDANPALFVT 238

Query: 259 NDKQK--MNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKT 315
            D     +  +   I  +    K  + +   H  R+  AT + D G    ++    G   
Sbjct: 239 LDAPHDRLKISGVEIRLRQLGRKLELERIHPHKFRRTMATRAIDKGMPIEQVQKILGHSQ 298

Query: 316 VDQAETYT 323
           +D    Y 
Sbjct: 299 IDTTMQYA 306


>gi|239621773|ref|ZP_04664804.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|239514964|gb|EEQ54831.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
          Length = 396

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 52/356 (14%), Positives = 108/356 (30%), Gaps = 50/356 (14%)

Query: 11  VTKERTRHGKIIYY--FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
           VT+ +T  G+  Y   +RK  G +              + +              P+   
Sbjct: 4   VTRYKTSKGETRYRVRYRKPDGTQTDKRGFKRKVDAENWAAKRVTVAKAEGTYIDPQAGK 63

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----- 123
            T+  L   +       +   + R    ++   +  + G+     +T +  +  V     
Sbjct: 64  ATVGELAPAWLAKKKLSTKPSHYRTLEGAWEKWVKPEWGNTPVSAVTRETTQQWVTGISQ 123

Query: 124 -----ESRK-----HTPSSAIQFLTS---MRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170
                + R        P SA   L +   +  +   A +   +  NP   +E P+++ + 
Sbjct: 124 GKTVKDERGNEIVLAKPRSASVVLRAHGVLAGILDDAKKDRRIPDNPARGIELPRKRRKK 183

Query: 171 IRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY-SGLRCSDSCRAGVQHLQ----------- 218
               T E + +        +  R     +L   G+R  +     V  +            
Sbjct: 184 HVYLTAEQLDRLAGSV---TPWRRDLVLVLGLCGMRWGELIPLRVMDVDLEKHRIYIGVS 240

Query: 219 ----NNIF---SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI 271
                 +      KT K   I+   + D  M+ L       +  F    ++ M   ++  
Sbjct: 241 APMVGGVIIPDDTKTYKARAIMYPVVLDPIMRRLCADRKPGDLLFEQPGREGMMIREWGN 300

Query: 272 ------WFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
                 W      +AG+    + H +R  +A++   AGA    +    G K+    
Sbjct: 301 ASRDDGWLSVGLRRAGIPGHLTIHDLRHTAASLMVRAGANVKAVQRQLGHKSAAMT 356


>gi|320658751|gb|EFX26425.1| putative defective integrase; Qin prophage [Escherichia coli O55:H7
           str. USDA 5905]
          Length = 427

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 45/317 (14%), Positives = 97/317 (30%), Gaps = 64/317 (20%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK-ITTKHIRSGVESR-- 126
           T+K L  ++        +A  S  ++ +    I+   G+ +    I  + +    +    
Sbjct: 80  TIKELAEKFLALKE-TEVAKTSLNTYRAVIKNILSIIGEKNLASSINKEKLLEVRKELLT 138

Query: 127 --------------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
                           +  +   ++T++  +F++ V   Y+A NP   +   K       
Sbjct: 139 GYQIPKSNYIVTQPGRSAVTVNNYMTNLNAVFQFGVDNGYLADNPFKGISPLKESRTIPD 198

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK----- 225
           P ++E+  +         Q +  +   +Y+G+R  + C  G + +   N    I+     
Sbjct: 199 PLSREEFIRLIDAC-RNQQAKNLWCVSVYTGVRPGELCALGWEDIDLKNGTMMIRRNLAK 257

Query: 226 --------TQKTGTIITV--ELPDGFMKLLAMTPIGKETFF------------------- 256
                      T  +I +     D     + +T + KE                      
Sbjct: 258 DRFTVPKTQAGTNRVIHLIKPAIDALRSQMTLTRLSKEHIIDVHLREYGRTEKQKCTFVF 317

Query: 257 -------INNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELM 308
                  + N             + A   +AG+ ++ ++  R   A  S  AGA    + 
Sbjct: 318 QPEVSARVKNYGDHFTVDSIRQMWDAAIKRAGLRHRKSYQSRHTYACWSLTAGANPAFIA 377

Query: 309 ATYGWKTVDQA-ETYTK 324
              G        + Y K
Sbjct: 378 NQMGHADAQMVFQVYGK 394


>gi|303326016|ref|ZP_07356459.1| site-specific recombinase, phage integrase family [Desulfovibrio
           sp. 3_1_syn3]
 gi|302863932|gb|EFL86863.1| site-specific recombinase, phage integrase family [Desulfovibrio
           sp. 3_1_syn3]
          Length = 337

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 53/340 (15%), Positives = 111/340 (32%), Gaps = 23/340 (6%)

Query: 17  RHGKIIYYFR-KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75
           + G   +  R +  G   +            +  A+        +I+    + T+L+   
Sbjct: 6   KRGDFQWEVRVRRKGHPTQCKTFEIKADAERWARAVEKEMDGGAFISQKEAERTSLEEAF 65

Query: 76  SEYRKSAHWGSLAVNSRISFESY--FDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
             +       +LA        ++        K      R      +    E++  +P + 
Sbjct: 66  KRFIPEYIEKNLAHPKNEIVRAHGIMKYPFAKKSLVAIRGNDIAKLIQEREAQGRSPHTI 125

Query: 134 IQFLTSMRVLF-----KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
            + +  +  L+      W +    +  NP  +V +PK      R     + ++     S+
Sbjct: 126 ARDIALISRLYEVARANWGME-GLM--NPTKNVIKPKLPQGRTRRLMPGEEKKLLEASSK 182

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN--IFSIKTQKTGTIITVELPDGFMKLLA 246
             Q      F L S +R  +      Q +     I  +   K G   TV L    + +L 
Sbjct: 183 AFQ--RILRFALESSMRREEIASLTWQQVDLERCILFLPKTKNGEARTVPLSPAALAILK 240

Query: 247 MTPIGKETFFINNDKQKMNAT--QFSIWFKAKATKAGV-NKSAHGVRKFSATISADA-GA 302
             P  +      +D++  + T    +   +    KAG+ +   H +R  + +   +    
Sbjct: 241 EIPRPEG---ERHDQRVFSYTISSITGAMRENCAKAGIKDLRFHDLRHEAISRLFENTDL 297

Query: 303 TAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSRRISS 341
              E+    G KT+     YT   A+R+   +  ++R  S
Sbjct: 298 DVMEIRMITGHKTLQMLARYTHLRAERLVERLAGAKRSGS 337


>gi|303236616|ref|ZP_07323197.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
 gi|302483120|gb|EFL46134.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
          Length = 337

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 54/265 (20%), Positives = 95/265 (35%), Gaps = 26/265 (9%)

Query: 84  WGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRSGVESRKHTP-----------S 131
           +  LA    I ++  +       +G   + ++     R  +E     P           +
Sbjct: 65  FKGLADRKNIKWQHVYKHFQRFVNGKCTFEEVDVDLCRKFMEYLLDAPQSIHTNQKLHIN 124

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           SA  + ++ R +   A R   +  NP   ++R +         ++E++ +      E   
Sbjct: 125 SAAGYWSTFRAVLHTAYRDRKIKENPNGFLDRIECIPTIREHLSQEELIRLAETPCEEEV 184

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQ---NNIFSIKT--QKTGTIITVELPDGFMKLLA 246
            + AF F   +GLR SD  +   Q +Q   N    + T  QKT  I+   + D    LL 
Sbjct: 185 LKKAFLFACLTGLRKSDIRQLTWQQIQPYTNGRMFVTTRMQKTKEIVHNPISDEAYGLLG 244

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATA 304
                 E     + K KM       W     T AG+ K  + H  R    ++  + G   
Sbjct: 245 E---RGEGLIFEDFKDKMLQGPLQRWL----TAAGITKKITFHCTRHSFGSLHVEMGTDM 297

Query: 305 HELMATYGWKTVDQAETYTKGADRI 329
             + A  G K +   + Y+K A + 
Sbjct: 298 AVIQAYLGHKNITTTQIYSKIAAQQ 322


>gi|255014895|ref|ZP_05287021.1| integrase [Bacteroides sp. 2_1_7]
          Length = 311

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 47/284 (16%), Positives = 105/284 (36%), Gaps = 36/284 (12%)

Query: 90  NSRISFESYFDQIIRKSG--DFDYRKITTKH---IRSGVESRKHTPSSAIQFLTSMRVLF 144
           ++  S++   +      G     Y  I        +S +  +  + ++   ++  +R ++
Sbjct: 25  STAKSYQDALNSFKCFCGMEAIPYAYINRNRLLCYQSWLLDKGRSLNTVSTYMRRIRHIY 84

Query: 145 KWAVRQEYVAINP------CLSVERPKRKTEGIRPWTKEDMQQ-FKSFWSEGSQPRLAFE 197
             AV        P         VE  ++K        +E +++ F +   + S  R+   
Sbjct: 85  NLAVEANEAPFVPNLFKDVFTGVESKRKK-----ALPQEMLERMFNAELEDQSLRRVQLT 139

Query: 198 FLL---YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL----AMTPI 250
             L   +SG+   D      +++++ I     QK+G++I +E+P G ++LL    A T  
Sbjct: 140 VRLMFAFSGIAFVDLAHLKWENIRDGILQYHRQKSGSLIQLEIPSGALRLLDELSACTAK 199

Query: 251 GKETFFINNDKQK----------MNATQFSIWFKAKATKAG--VNKSAHGVRKFSATISA 298
                F     ++             ++F+   ++ A   G  +  +++ +R   A+   
Sbjct: 200 ESLYLFPFLSGRRTGEAAYKEYNRTLSRFNRDLRSLARSTGVTLPVTSYTIRHSFASFLK 259

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
           +   +   +    G K++   + Y K     RL   N     SV
Sbjct: 260 EQDVSIEVISELLGHKSIKTTQIYLKSFSLERLSKVNRNCFESV 303


>gi|158321643|ref|YP_001514150.1| integrase family protein [Alkaliphilus oremlandii OhILAs]
 gi|158141842|gb|ABW20154.1| integrase family protein [Alkaliphilus oremlandii OhILAs]
          Length = 286

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 37/280 (13%), Positives = 94/280 (33%), Gaps = 27/280 (9%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYF----DQIIRKSG-DFDYRKITTKHIRSGVESR 126
             ++  + +       +  +   ++         + +K G + +  +I++  +   +   
Sbjct: 4   SNVVENFLRYLESIDRSKETIKGYKKELGYFGRFLEKKYGFEKEMEQISSVDLEDYMYYL 63

Query: 127 KHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----M 179
           K +    ++  + +   R L+K++ ++E    N  + +E  K K       ++E+    +
Sbjct: 64  KKSGKKSATRSRVVYIFRSLYKYSYKRELCTKNLAIFLESVKVKQTERDYLSEEEFILLI 123

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVEL 237
           Q+  S     S  + A + + Y+GLR S++    ++++     I    + K      + +
Sbjct: 124 QKINS-----SIVKAAVQTIFYTGLRVSEALNLTMENVKLDEKIIYTISGKGDKDRIIPI 178

Query: 238 PDGFMKLLA------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289
            +    +L          +    FF       ++    +             K  SAH +
Sbjct: 179 SNKLYYILDDYVKNIRPDVESNKFFCTKKTGSLSPQYINRMLHIAKDSLNWEKNISAHIL 238

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           R   A+      A    +    G   +     Y     R 
Sbjct: 239 RHSFASNLILQNAPLPAVQKLLGHSDLRVTSRYIHQDLRQ 278


>gi|254518744|ref|ZP_05130800.1| phage integrase [Clostridium sp. 7_2_43FAA]
 gi|226912493|gb|EEH97694.1| phage integrase [Clostridium sp. 7_2_43FAA]
          Length = 292

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 76/220 (34%), Gaps = 15/220 (6%)

Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
                + S+  +  S  + + S+R  + +   Q+ V+  P +  +      +     T +
Sbjct: 53  GYIQYLLSQGKSERSINRIVISLRSFYNYLKDQKVVSEIPKIYYKNTTTTKKLPEILTID 112

Query: 178 DMQQFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-I 232
           ++ +         ++G +     E +  +G++ S+     V  +   +  +K        
Sbjct: 113 EVDRIIKIVDKDCNKGIRDNALLELMYATGMKVSEIIGLNVYDINLELNFVKCHDNKNYE 172

Query: 233 ITVEL----PDGFMKLLAM----TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284
             + +     +   + L +       G ET F+N +   +         K  + KAG+ K
Sbjct: 173 RLIPIGRSATEALKEYLKIRDQVASAGVETLFVNLNGNHLTRQGVWRIVKEYSHKAGIKK 232

Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
             + +  R   A      GA    +    G + +   +TY
Sbjct: 233 EVNLNTFRHSFAVHLLQNGANVRAVQKLLGNQVLTYMDTY 272


>gi|218691167|ref|YP_002399379.1| Shufflon-specific DNA recombinase [Escherichia coli ED1a]
 gi|218428731|emb|CAR09669.2| Shufflon-specific DNA recombinase [Escherichia coli ED1a]
          Length = 374

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 46/274 (16%), Positives = 95/274 (34%), Gaps = 19/274 (6%)

Query: 65  RKKPTTLKWLISEYRKSAHWGS---LAVNSRIS---FESYFDQIIRKSGDFDYRKITTKH 118
           + +  TL   + +Y K+        L    R++        ++ + +    D      + 
Sbjct: 6   KIRKMTLNRALDKYLKTVSIHKKGHLQEFYRVNVIKRHPMAERYMDEITTVDIATYRDQR 65

Query: 119 IRSG--VESRKHTPSSAIQFLTSMRVLFKWA-VRQEYVAINPCLSVERPKRKTEGIRPWT 175
           +        R+ T ++    L  +  LF  A V      +NP   V +PK  +   R  T
Sbjct: 66  LAQINPRTGRQITGNTVRLELALLSSLFNIASVEWGTCRMNPVELVRKPKISSGRDRRLT 125

Query: 176 KEDMQQF-KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTGTI 232
             + ++  + F  +  Q  + F   L + +R  +      +HL     +  +   K G  
Sbjct: 126 SGEERRLSRYFRDKNQQLYVIFHLALETAMRQGEILTLRWEHLDLQHGVAHLPETKNGLP 185

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRK 291
             V L       L + P       IN +     ++ F   ++       + N   H +R 
Sbjct: 186 RDVPLSRKARNYLQILPQQ-----INGNVFSYTSSGFKSAWRTALLDLKIENLHFHDLRH 240

Query: 292 FSATISADAG-ATAHELMATYGWKTVDQAETYTK 324
            + +   + G     E+ A  G ++++  + YT 
Sbjct: 241 EAISRFFELGTLNVMEVAAISGHRSLNMLKRYTH 274


>gi|92112109|gb|ABE73743.1| class 1 integron integrase [Azoarcus communis]
          Length = 337

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 42/306 (13%), Positives = 93/306 (30%), Gaps = 62/306 (20%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129
           ++ + R+   +   ++ +  ++  +    IR  G      + +  + + +      RK +
Sbjct: 16  VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75

Query: 130 PSSAIQFLTSMRVLFK--WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            S+  Q L ++   +         ++       + RP+         T +++ +   F  
Sbjct: 76  VSTHRQALAALLFFYGKVLCTDLTWLQ-----EIGRPRPSRRLPVVLTPDEVVRILGFL- 129

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
           EG   RL  + L  +G+R S+  +  V+     +    ++  K      + LP+     L
Sbjct: 130 EGEH-RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSL 188

Query: 246 AMTPIGKETFFINN---------------------------------------------D 260
                    +++ +                                              
Sbjct: 189 REQLSRARDWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFLVFAQHTHSTDPRSGVVR 248

Query: 261 KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           +  M    F   FK    +AG+ K  + H +R   AT    +G     +    G   V  
Sbjct: 249 RHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVST 308

Query: 319 AETYTK 324
              YT 
Sbjct: 309 TMIYTH 314


>gi|307310851|ref|ZP_07590497.1| integrase family protein [Escherichia coli W]
 gi|306909029|gb|EFN39525.1| integrase family protein [Escherichia coli W]
 gi|323378547|gb|ADX50815.1| integrase family protein [Escherichia coli KO11]
          Length = 426

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 45/317 (14%), Positives = 97/317 (30%), Gaps = 64/317 (20%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK-ITTKHIRSGVESR-- 126
           T+K L  ++        +A  S  ++ +    I+   G+ +    I  + +    +    
Sbjct: 80  TIKELAEKFLALKE-TEVAKTSLNTYRAVIKNILSIIGEKNLASSINKEKLLEVRKELLT 138

Query: 127 --------------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
                           +  +   ++T++  +F++ V   Y+A NP   +   K       
Sbjct: 139 GYQIPKSNYIVTQLGRSAVTVNNYMTNLNAVFQFGVDNGYLADNPFKGISPLKESRTIPD 198

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK----- 225
           P ++E+  +         Q +  +   +Y+G+R  + C  G + +   N    I+     
Sbjct: 199 PLSREEFIRLIDAC-RNQQAKNLWCVSVYTGVRPGELCALGWEDIDLKNGTMMIRRNLAK 257

Query: 226 --------TQKTGTIITV--ELPDGFMKLLAMTPIGKETFF------------------- 256
                      T  +I +     D     + +T + KE                      
Sbjct: 258 DRFTVPKTQAGTNRVIHLIKPAIDALRSQMTLTRLSKEHIIDVHLREYGRTEKQKCTFVF 317

Query: 257 -------INNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELM 308
                  + N             + A   +AG+ ++ ++  R   A  S  AGA    + 
Sbjct: 318 QPEVSARVKNYGDHFTVDSIRQMWDAAIKRAGLRHRKSYQSRHTYACWSLTAGANPAFIA 377

Query: 309 ATYGWKTVDQA-ETYTK 324
              G        + Y K
Sbjct: 378 NQMGHADAQMVFQVYGK 394


>gi|260843883|ref|YP_003221661.1| putative integrase [Escherichia coli O103:H2 str. 12009]
 gi|257759030|dbj|BAI30527.1| putative integrase [Escherichia coli O103:H2 str. 12009]
          Length = 431

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 46/317 (14%), Positives = 99/317 (31%), Gaps = 64/317 (20%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK-ITTKHIRSGVESR-- 126
           T+K L  ++        +A  S  ++ +    I+   G+ +    I  + + +  +    
Sbjct: 85  TIKELAEKFLALKE-TEVAKTSLNTYRAVIKNILSIIGEKNLASSINKEKLLAVRKELLT 143

Query: 127 --------------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
                           +  +   ++T++  +F++ V   Y+A NP   +   K       
Sbjct: 144 GYQIPKSNYIVTQPGRSAVTVNNYMTNLYAVFQFGVDNGYLANNPFKGISPLKESRTIPD 203

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK----- 225
           P ++E+  +         Q +  +   +Y+G+R  + C  G + +   N    I+     
Sbjct: 204 PLSREEFIRLIDAC-RNQQAKNLWCVSVYTGIRPGELCALGWEDIDLKNGTMIIRRNLAK 262

Query: 226 --------TQKTGTIITV--ELPDGFMKLLAMTPIGKETFF------------------- 256
                      T  +I +     D     +A+T + KE                      
Sbjct: 263 DRFTVPKTQAGTNRVIHLINPAIDALRSQMALTRLSKEHIIDVHLREFGRTEKQKCTFVF 322

Query: 257 -------INNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELM 308
                  + N             + A   +AG+ ++ ++  R   A  S  AGA    + 
Sbjct: 323 QPEVSAKVKNYGDHFTVDSIRQMWDAAVKRAGIRHRKSYQSRHTYACWSLTAGANPAFIA 382

Query: 309 ATYGWKTVDQA-ETYTK 324
              G        + Y K
Sbjct: 383 NQMGHADAQMVFQVYGK 399


>gi|325286409|ref|YP_004262199.1| integrase family protein [Cellulophaga lytica DSM 7489]
 gi|324321863|gb|ADY29328.1| integrase family protein [Cellulophaga lytica DSM 7489]
          Length = 297

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 43/248 (17%), Positives = 91/248 (36%), Gaps = 10/248 (4%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS-SAIQFLTSMRVL 143
            + + N+  ++   F Q +         +++T HI    +      + SA     S+  +
Sbjct: 34  KNYSKNTTKTYMHMFKQFLTYMYPMPLHQVSTAHIMYYHKELVTKQNVSASYQNQSINAI 93

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203
            K+ + +            RP++  +  +  + +++    +  +   + +   + +   G
Sbjct: 94  -KFYIEKVLNLPKVQYDFCRPRKAKKLPKVLSLQEVADIITV-TNNIKHKTILKMIYGCG 151

Query: 204 LRCSDSCRAGVQHLQNN--IFSIKTQK-TGTIITVELPDGFMKLLAMTPIGKET--FFIN 258
           LR S+     V+ + +N     ++  K     IT+  P    +L A   + K     F  
Sbjct: 152 LRISECVNLKVEDIDSNNMRVWVRNAKGNKDRITLLSPTMLAQLRAYYIVYKPKKWLFEG 211

Query: 259 NDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTV 316
            D ++ +A+     F     KA V+   + H +R   AT   DAG     +    G  + 
Sbjct: 212 ADGKQYSASSIRQVFNRSKKKARVHMPATVHTLRHSFATHLLDAGTNLRYIQKLLGHNSS 271

Query: 317 DQAETYTK 324
              E YT 
Sbjct: 272 KTTEIYTH 279


>gi|307708146|ref|ZP_07644613.1| site-specific recombinase, phage integrase family [Streptococcus
           mitis NCTC 12261]
 gi|307615592|gb|EFN94798.1| site-specific recombinase, phage integrase family [Streptococcus
           mitis NCTC 12261]
          Length = 384

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 61/366 (16%), Positives = 117/366 (31%), Gaps = 57/366 (15%)

Query: 11  VTKERTRHGKIIYYF-------RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63
           + K +T+ G I+YY          G  +R              Y + L            
Sbjct: 3   IHKYKTKKG-ILYYVSFYIGLDAYGKKKRHLKRGFKTKKEAKLYEARLEAGVVAPTVSTD 61

Query: 64  PRKKPTTLKWL----ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119
                 T K L     + Y  +    + +  ++  +  +   I    GD    +I+    
Sbjct: 62  KTNPKVTYKELYQEWFNAYVGTVEETT-SSQTKNIYRIHILPI---FGDKFIDQISPLDC 117

Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK-RKTEGIRPWTKED 178
           ++ +  +  T  +  Q  +    +F +A+   Y+  NP  +V  PK +KT     W+ E+
Sbjct: 118 QNFITQKSQTFKNIKQIKSYTSKIFDFAINMNYIDRNPMKNVIMPKIKKTRSDNFWSLEE 177

Query: 179 MQQFKSFWS--EGSQPRLAFEFLLYSGLRCSDSCRAGVQH----------------LQNN 220
           +  F       E  +    F  L +SGLR  +                        +   
Sbjct: 178 LHHFLDIVKETEPFKHFALFRLLAFSGLRKGELYALKWADINFDSNLLNIDKSLGRIDGK 237

Query: 221 IFSIKTQKTGTIITVELPDGFMKLLA-----------MTPIGK--------ETFFINNDK 261
                T+   ++ T+ L D  + ++              P+ K         ++  +NDK
Sbjct: 238 AIEKSTKNESSVRTIYLDDETIDIIKQWRNFYLKEQSQLPLTKLNISDEYMFSYISSNDK 297

Query: 262 -QKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
            + ++A   +        K  +   S HG R   AT+ ++ G          G  +    
Sbjct: 298 IEPLHADYINNVLNRIIKKHKLKPISPHGFRHTHATLMSEIGIDPSNTSKRLGHASSQVT 357

Query: 320 -ETYTK 324
            + YT 
Sbjct: 358 LDVYTH 363


>gi|254494929|ref|ZP_01052592.2| phage integrase family protein [Polaribacter sp. MED152]
 gi|213690511|gb|EAQ42020.2| phage integrase family protein [Polaribacter sp. MED152]
          Length = 315

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 45/273 (16%), Positives = 103/273 (37%), Gaps = 22/273 (8%)

Query: 74  LISEYRKS-AHWGSLAVNSRISFESYFDQ----IIRKSGDFDYRKITTKHIRSGVESR-- 126
           LI  +    +H  + + ++ I+++   +     I       D  ++    IRS + S   
Sbjct: 22  LIKAFLDYLSHEKNYSKHTVIAYQKDLNSFKSFIRINFDQEDLLEVNYSQIRSWIVSLVE 81

Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
            + +  +  + ++S++  +K+  + E +  NP    +  K   +   P++++++      
Sbjct: 82  EEISNRTINRKISSLKSFYKFLQKTEQIKSNPLQKHKALKVAKKVQVPFSQKEVATVLES 141

Query: 186 WSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240
            +E S    + +L  E    +G+R ++     ++ + +    +K   K      V + + 
Sbjct: 142 NTENSFVSIRNKLMVEIFYSTGIRRAELINIQLKDINSGSNVLKVLGKRNKERLVPILNS 201

Query: 241 FMKLL-------AMTPIGKETFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSAHGVRK 291
            +K L              E  FI     K+  T       +      + V KS H +R 
Sbjct: 202 VLKTLNLYLGHRKNISNNSEYLFITEKGNKIYETLVYRVINSYFSKVSSKVKKSPHMLRH 261

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK 324
             AT   + GA  + +    G  ++   + YT 
Sbjct: 262 SFATHLLNEGADLNSVKELLGHSSLASTQVYTH 294


>gi|154505934|ref|ZP_02042672.1| hypothetical protein RUMGNA_03476 [Ruminococcus gnavus ATCC 29149]
 gi|153793952|gb|EDN76372.1| hypothetical protein RUMGNA_03476 [Ruminococcus gnavus ATCC 29149]
          Length = 376

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 41/278 (14%), Positives = 80/278 (28%), Gaps = 38/278 (13%)

Query: 90  NSRISF-ESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFK--- 145
           N+  ++ E Y   I    G+     +   H +                  +   L+    
Sbjct: 86  NTVRNYTERYIKNIKPVIGEMPLSDVKPLHCQKIFYDMADQEYRTSTIYQARIALYNMFE 145

Query: 146 WAVRQEYVAINPCLS-VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGL 204
           +A   E +  NPC   V+    K    +     D+Q+    ++EG      + F+L +GL
Sbjct: 146 YAKENEVLCSNPCKKSVKSDMGKPSEKKVALTRDIQKTFLQYAEGQSYENQYRFILQTGL 205

Query: 205 RCSDSCRAGVQHLQNN-------------------IFSIKTQKTGTIITVELPDGFMKLL 245
           R  +      + +                             K+G   T+ L +  + +L
Sbjct: 206 RTGELVGLKWKDVDLKSKTIQIRRSMEYRYSAKKWRIGEPKSKSGYR-TIPLTEEAVAIL 264

Query: 246 AMTPIGKETF-----------FINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFS 293
                  +             F+      +  + +         KA + + S H +R   
Sbjct: 265 KKQKEKNKRISEISTEWEEFVFLCRKGTPVKNSTYDTALFKICDKAKIPRFSMHILRHTF 324

Query: 294 ATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIR 330
           AT   +AG     L    G   +      Y    +  +
Sbjct: 325 ATRCIEAGMKPKTLQMLLGHSNIGITMNLYVHTTEEEK 362


>gi|54297046|ref|YP_123415.1| hypothetical protein lpp1088 [Legionella pneumophila str. Paris]
 gi|53750831|emb|CAH12239.1| hypothetical protein lpp1088 [Legionella pneumophila str. Paris]
          Length = 414

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 49/293 (16%), Positives = 108/293 (36%), Gaps = 20/293 (6%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD 110
            +G  PK+       KK  T++ LI+ + +     +         +     II   G  +
Sbjct: 77  RSGQAPKKIIQIQNEKKNNTMEQLINSWYQGYVIKNRK-KPLQIKQQIEADIIPLLGHLE 135

Query: 111 YRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER---PK 165
             KI    I + +++  ++  P  A + L+S++ +F +A+ +  +  NP  +++      
Sbjct: 136 LEKIKPIDITNALDTIVKRGAPIHANRVLSSLKQVFNYAISRGNLETNPAANIKARNIGG 195

Query: 166 RKTEGIRPWTKEDMQQFKSFW-----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-N 219
            +    R    ++++    F          Q + A + +L +G+R ++   A   H    
Sbjct: 196 IEKPSERFLALDEIKTLWQFLNSDQSKMSLQTKSAIKIILLTGVRTAEIRLAQWSHFDFA 255

Query: 220 NIFSIKTQ---KTGTIITVELPDGFMKLLAMTPIGKETFFINND---KQKMNATQFSIWF 273
           N          K G  + + L +    ++     G ++ F+ +     + ++        
Sbjct: 256 NSLWTIPSELTKGGITVKIHLSELTKSVILKLNEGSDSSFVLSGLVPNKPLDENALPRAI 315

Query: 274 KAKATKAGVN-KSAHGVRKFSATISADAGA-TAHELMATYGWKTVDQAETYTK 324
           +    + G+   SAH +R+  AT   +        +    G K      TY K
Sbjct: 316 RRIQKRVGIPEWSAHDLRRTFATQLGETLHIDPVVIEKCLGHKMPRIMATYNK 368


>gi|301054003|ref|YP_003792214.1| DNA integration/recombination/invertion protein [Bacillus anthracis
           CI]
 gi|300376172|gb|ADK05076.1| DNA integration/recombination/invertion protein [Bacillus cereus
           biovar anthracis str. CI]
          Length = 317

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 45/295 (15%), Positives = 94/295 (31%), Gaps = 52/295 (17%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQII-------------RKSGDFDYRKITTKHIRS 121
           I EY +     +L+  +  S+E+  ++                         I ++HI+ 
Sbjct: 7   IKEYIEDRSLENLSHRTLESYENTLNEFRLWLNGCNGNEEEASSRAVTHVEDIKSQHIKD 66

Query: 122 GVE----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI--NPCLSVERPKRKTEGIRPWT 175
            +      R ++ ++    LT+++V F +  ++  +    NP L V+ P++ T      T
Sbjct: 67  YMRYCYKERSNSHTTVAGKLTNLKVYFNYLAQEGLIEERNNPTLRVKNPRKDTNV-ETLT 125

Query: 176 KED-------------MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222
           +E              +  F  +     +      FLL +G R  +      + +     
Sbjct: 126 EEQIRLILRHLRRRRRVDDFYHY-----RDYTLVVFLLGTGARLGEIMDLRWEDIDLKAG 180

Query: 223 SIKTQKTGTIIT----------VELPDGFMKLLAMTPIGKETFFINND-KQKMNATQFSI 271
            +    TG   T          +     + + L     G   +       +KM+     +
Sbjct: 181 QVVFPDTGKARTQQGQPLGAKLISELKDYKQYLENDTYGLPAYLFTTRTGRKMSREAIKL 240

Query: 272 WFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
            F   A +        SAH +R F  +    AG +   +        ++    Y 
Sbjct: 241 VFVRLAQELNFKSGRVSAHSLRHFYCSSLIKAGVSPFVVQKLMRHSKIETTMKYV 295


>gi|260664108|ref|ZP_05864961.1| Lj965 prophage integrase [Lactobacillus jensenii SJ-7A-US]
 gi|260561994|gb|EEX27963.1| Lj965 prophage integrase [Lactobacillus jensenii SJ-7A-US]
          Length = 375

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 46/295 (15%), Positives = 105/295 (35%), Gaps = 36/295 (12%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
             + YR +    S A  + I++  +        G+    KI+ + ++   +         
Sbjct: 79  WFARYRTTVK-ESTANKTAINYRVHIKPF---FGNAYMDKISVRDVQLWADKLATKLVKF 134

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-----PWTKEDMQQFKSFWSE 188
              +  +R  +++A+R  YV+INP  S+  P + +   R      +++++++ F     E
Sbjct: 135 NDPIFILRSFYEYAIRMNYVSINPVGSIIMPIKTSRPRRNVEDNVYSRKELELFFQVAKE 194

Query: 189 -GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----------------NNIFSIKTQKTGT 231
              +    F+ L  +GLR S++       +                 +N   ++  K+ +
Sbjct: 195 YNLRAYTYFKLLASTGLRKSEALALTWDDIDFINGVIDVNKTLAVGLDNKVQVQPPKSKS 254

Query: 232 IIT-VELPDGFMKLLAMTPIG----KETFFINNDKQKMNATQFSIWFKAKATKA--GVNK 284
            I  V +      +L              F     + ++ ++   W +A   KA   +  
Sbjct: 255 SIRQVPISANLANVLNEYKNSEKILSAKVFHTYTGKYLSLSKPMKWLEAIYNKAPKDLKH 314

Query: 285 -SAHGVRKFSATIS-ADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNS 336
            + HG R   AT+  ++       +    G   +    + YT   ++ +    N 
Sbjct: 315 ITVHGFRHTFATLLISETDVKPKTVQMLLGHSNIQMTLDIYTHINNKNKKEAVNM 369


>gi|260425160|ref|ZP_05779169.1| site-specific recombinase, phage integrase family [Dialister
           invisus DSM 15470]
 gi|260404344|gb|EEW97891.1| site-specific recombinase, phage integrase family [Dialister
           invisus DSM 15470]
          Length = 274

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 47/253 (18%), Positives = 89/253 (35%), Gaps = 43/253 (16%)

Query: 109 FDYRKITTKHIRSGVES------------RKHTPSSAIQFLTSMRVLFKWAVRQEYVAIN 156
               KIT   IR+                RK++P+        +  +F +AV    +  N
Sbjct: 1   MPINKITPADIRAWQNQILQATYITKGLQRKYSPTYVKVLHVQLSAIFNYAVTYYRLPSN 60

Query: 157 PCLSVERP-KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ 215
           P        K +   ++ WT E   +F S +   S   L F  L Y+G+R  +     + 
Sbjct: 61  PAKLAGSIGKTRAHTMKFWTIEQFTRFISSFPADSTEYLIFNLLFYTGMRSGELLALTLA 120

Query: 216 HLQNNIFSIKTQKTGTIIT----------------VELP----DGFMKLLAMTPIGKETF 255
                  SI+  KT + +                 + LP    D     +  +P      
Sbjct: 121 DFYEREKSIRINKTYSRLHKKDIITSPKTEKGNRVILLPQFIVDMLTDYINRSP------ 174

Query: 256 FINNDKQKMNATQFSIW--FKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYG 312
           +I  +++    T+F ++   K     +GV +   H +R   A++  + G +   +    G
Sbjct: 175 YIKQNERIFPCTKFWLFRHMKLGCKLSGVEQIRIHDLRHSHASLLIEMGFSPLLIKERLG 234

Query: 313 WKTVDQA-ETYTK 324
            + +    +TY+ 
Sbjct: 235 HEDIKTTLQTYSH 247


>gi|213155654|ref|YP_002317699.1| IntI1 integrase [Acinetobacter baumannii AB0057]
 gi|301347157|ref|ZP_07227898.1| IntI1 integrase [Acinetobacter baumannii AB056]
 gi|213054814|gb|ACJ39716.1| IntI1 integrase [Acinetobacter baumannii AB0057]
          Length = 344

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 42/306 (13%), Positives = 94/306 (30%), Gaps = 62/306 (20%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129
           ++ + R+   +   ++ +  ++ ++    IR  G      + +  + + +      RK +
Sbjct: 16  VLDQLRERIRYLHYSLRTEQAYVNWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75

Query: 130 PSSAIQFLTSMRVLFK--WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            S+  Q L ++   +         ++       + RP+         T +++ +   F  
Sbjct: 76  VSTHRQALAALLFFYGKVLCTDLPWLQ-----EIGRPRPSRRLPVVLTPDEVVRILGFL- 129

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
           EG   RL  + L  +G+R S+  +  V+     +    ++  K      + LP+     L
Sbjct: 130 EGEH-RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSL 188

Query: 246 AMTPIGKETFFINN---------------------------------------------D 260
                    +++ +                                              
Sbjct: 189 REQLSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVR 248

Query: 261 KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           +  M    F   FK    +AG+ K  + H +R   AT    +G     +    G   V  
Sbjct: 249 RHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVST 308

Query: 319 AETYTK 324
              YT 
Sbjct: 309 TMIYTH 314


>gi|296104775|ref|YP_003614921.1| phage integrase family site-specific recombinase [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
 gi|295059234|gb|ADF63972.1| phage integrase family site-specific recombinase [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
          Length = 361

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 52/318 (16%), Positives = 97/318 (30%), Gaps = 35/318 (11%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87
             GRRIR           AY   +   +  + ++   +     ++ L++ +   AH  +L
Sbjct: 20  RDGRRIR-RQFATKGEALAYERHIKEQSQDKPWLG-EKADKRRVRDLVTAWYN-AHGVTL 76

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH------------TPSSAIQ 135
           A   +   +   +      GD    +   K   +  E R              TP +   
Sbjct: 77  ADGEKR--KGAMEFACYAMGDPLATEFNAKIFSTYREQRLSGKITRSDRVKTVTPRTVNL 134

Query: 136 FLTSMRVLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
            L   R +F    R  ++ A NP  +V   K     +   T E+  +      +     L
Sbjct: 135 ELAYFRAMFNELKRLDDWTAPNPLENVREFKIAEVELAWLTVEEATRLLEECEKSKADDL 194

Query: 195 --AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252
               +  L +G R  ++     + +     +    K      V + +   +LL  +   K
Sbjct: 195 TAIVKICLATGARWGEAESLTGKQISPGKITFIKTKGKKNRAVPISEELYELLPKSRTSK 254

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNKS----AHGVRKFSATISADAGATAHELM 308
             F           T     F++   +AG+       +H +R   A+     G     L 
Sbjct: 255 PLF-----------TGCYSAFRSAIKRAGIELPDGQLSHVLRHTFASHFMMGGGNILVLQ 303

Query: 309 ATYGWKTVDQAETYTKGA 326
              G   +     Y   A
Sbjct: 304 RILGHTDIKVTMRYAHFA 321


>gi|254466182|ref|ZP_05079593.1| tyrosine recombinase XerC [Rhodobacterales bacterium Y4I]
 gi|206687090|gb|EDZ47572.1| tyrosine recombinase XerC [Rhodobacterales bacterium Y4I]
          Length = 306

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/265 (14%), Positives = 80/265 (30%), Gaps = 27/265 (10%)

Query: 86  SLAVNSRISFESYFDQIIR--------KSGDFDYRKITTKHIRSGVESRKHTPSSAI--- 134
             + N+  ++       +           G     +ITT  +R+ + S +++ + A    
Sbjct: 24  DASANTLAAYRGDVTAFLAFMTQHFGGPQGLGALARITTADMRAWMASERNSGTGARSLA 83

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE------ 188
           + L++++  ++W  ++E       L    PK + +  RP   E  +              
Sbjct: 84  RKLSAVKTFYRWLAKREGFEPAAVLLARAPKFQKKLPRPLAPEAAKAVLEAVELQSETDW 143

Query: 189 -GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
             ++       L   GLR S++                  K      V +       +  
Sbjct: 144 VAARDVAVVTLLYGCGLRISEALGLKGADAPLPQVLRILGKGRKERVVPVLPAARAAVDR 203

Query: 248 -------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISA 298
                          F       +N  Q          + G+  +A  H +R   AT   
Sbjct: 204 YLELCPHPQERAAPLFRGVRGGALNPRQIQGVMAKTRAQLGLPATATPHALRHSFATHLL 263

Query: 299 DAGATAHELMATYGWKTVDQAETYT 323
           +AG     +    G  ++   +TYT
Sbjct: 264 EAGGDLRAIQELLGHASLSTTQTYT 288


>gi|258612347|ref|ZP_05270117.2| DNA integration/recombination/invertion protein [Listeria
           monocytogenes F6900]
 gi|293596731|ref|ZP_05263903.2| DNA integration/recombination/invertion protein [Listeria
           monocytogenes J2818]
 gi|258611034|gb|EEW23642.1| DNA integration/recombination/invertion protein [Listeria
           monocytogenes F6900]
 gi|293591908|gb|EFG00243.1| DNA integration/recombination/invertion protein [Listeria
           monocytogenes J2818]
          Length = 393

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 42/296 (14%), Positives = 84/296 (28%), Gaps = 47/296 (15%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE---SR 126
               + ++R +     L  N+   +  + +  II         KITT  +         +
Sbjct: 71  FIDFVEKWRLNYAKRELKGNTIDKYNLFLENWIIPYFERKKISKITTMQLLDYFHEVQKK 130

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
              PS+       +R LFK+A        +  LSV++P  K      + + +++      
Sbjct: 131 GVGPSALEGHHRVIRSLFKYATLWGITETDVSLSVKKPTYKVPEKNIYNRREIEVLIDRI 190

Query: 187 SEGSQ-PRLAFEFLLYSGLRCSDSCRAGVQHLQ----------------NNIFSIKTQKT 229
               +  ++  +  LY GLR  +      + +                 +    +   K 
Sbjct: 191 KILQKYQQVMIKLALYCGLRRGEVIGLTTKDMNYNKNTINVYRAVIKSASEGIKLDETKN 250

Query: 230 GTIITVELPDGFMKLLAMTPIGKE----------------------TFFINNDKQKMNAT 267
                V  P G M+ +      K+                        F ++D       
Sbjct: 251 KRKRIVPAPAGLMQEIKELAKEKQKNKDKLGLLWKGTKDLDGKTVVLIFSHDDGTPFTPA 310

Query: 268 QFSIWFKAKATKAG----VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
             +  F     K         S H +R  +A+   + G     +    G   +   
Sbjct: 311 SVTRMFNRFLEKEENNDLTKISFHDLRHSAASFLLEQGINVKVIQNILGHSDIKVT 366


>gi|222033338|emb|CAP76078.1| lambdoid prophage Qin defective integrase [Escherichia coli LF82]
          Length = 426

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 44/317 (13%), Positives = 96/317 (30%), Gaps = 64/317 (20%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK-ITTKHIRSGVESR-- 126
           T+K L  ++        +A  S  ++ +    I+   G+ +    I  + +    +    
Sbjct: 80  TIKELAEKFLALKE-TEVAKTSLNTYRAVIKNILSIIGEKNLASSINKEKLLEVRKELLT 138

Query: 127 --------------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
                           +  +   ++T++  +F++ V   Y+  NP   +   K       
Sbjct: 139 GYQIPKSNYIVTQPGRSAVTVNNYMTNLNAVFQFGVDNGYLPDNPFKGISPLKESRTIPD 198

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK----- 225
           P ++E+  +         Q +  +   +Y+G+R  + C  G + +   N    I+     
Sbjct: 199 PLSREEFIRLIDAC-RNQQAKNLWCVSVYTGVRPGELCALGWEDIDLKNGTMMIRRNLAK 257

Query: 226 --------TQKTGTIITV--ELPDGFMKLLAMTPIGKETFF------------------- 256
                      T  +I +     D     + +T + KE                      
Sbjct: 258 DRFTVPKTQAGTNRVIHLIKPAIDALRSQMTLTRLSKEHIIDVHLREYGRTEKQKCTFVF 317

Query: 257 -------INNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELM 308
                  + N             + A   +AG+ ++ ++  R   A  S  AGA    + 
Sbjct: 318 QPEVSARVKNYGDHFTVDSIRHMWDAAIKRAGLRHRKSYQSRHTYACWSLTAGANPAFIA 377

Query: 309 ATYGWKTVDQA-ETYTK 324
              G        + Y K
Sbjct: 378 NQMGHADAQMVFQVYGK 394


>gi|169633390|ref|YP_001707126.1| putative phage integrase/recombinase [Acinetobacter baumannii SDF]
 gi|169152182|emb|CAP01086.1| putative phage integrase/recombinase [Acinetobacter baumannii]
          Length = 319

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 38/236 (16%), Positives = 84/236 (35%), Gaps = 14/236 (5%)

Query: 93  ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVR- 149
                    +     D    ++    +    E R      ++  +    +   F W +  
Sbjct: 77  KERRKINFLLKAMYVDQPLIQVNKDFLTEWREQRLLNVKGATIRREFILLSAFFTWCIEV 136

Query: 150 QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDS 209
           + ++++NP   ++ P       R  + E+++    F S  ++ R  F   L +G+R S+ 
Sbjct: 137 KRWLSVNPLRDIKFPSESPHRERVISDEEIEILLPFLS--TEMRYIFLIALQTGMRLSEI 194

Query: 210 CRAGVQHLQN--NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT 267
           C    + ++   N   +   K G    V L    +++       K+ +  +     + + 
Sbjct: 195 CNLKWEKIRLSKNYLILDLTKNGRAREVPLSSKAVEIFKSIGPKKQGYVFS-----ITSD 249

Query: 268 QFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
             +  F+    +AG+   + H  R  +AT  A       +L   +GW    +A  Y
Sbjct: 250 DATDEFRDAKLEAGLEGFTFHDSRHTAATKIALR-IPLLDLCKMFGWSNPRRAMIY 304


>gi|307710454|ref|ZP_07646891.1| phage integrase family protein [Streptococcus mitis SK564]
 gi|307618717|gb|EFN97856.1| phage integrase family protein [Streptococcus mitis SK564]
          Length = 384

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 61/366 (16%), Positives = 117/366 (31%), Gaps = 57/366 (15%)

Query: 11  VTKERTRHGKIIYYF-------RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63
           + K +T+ G I+YY          G  +R              Y + L            
Sbjct: 3   IHKYKTKKG-ILYYVSFYIGLDAYGKKKRHLKRGFKTKKEAKLYEARLEAGVVAPTVSTD 61

Query: 64  PRKKPTTLKWL----ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119
                 T K L     + Y  +    + +  ++  +  +   I    GD    +I+    
Sbjct: 62  KPNPKVTYKELYQEWFNAYVGTVEETT-SSQTKNIYRIHILPI---FGDKFIDQISPLDC 117

Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK-RKTEGIRPWTKED 178
           ++ +  +  T  +  Q  +    +F +A+   Y+  NP  +V  PK +KT     W+ E+
Sbjct: 118 QNFITQKSQTFKNIKQIKSYTSKIFDFAINMNYIDRNPMKNVIMPKIKKTRSDNFWSLEE 177

Query: 179 MQQFKSFWS--EGSQPRLAFEFLLYSGLRCSDSCRAGVQH----------------LQNN 220
           +  F       E  +    F  L +SGLR  +                        +   
Sbjct: 178 LHHFLDIVKETEPFKHFALFRLLAFSGLRKGELYALKWADINFDSNLLNIDKSLGRIDGK 237

Query: 221 IFSIKTQKTGTIITVELPDGFMKLLA-----------MTPIGK--------ETFFINNDK 261
                T+   ++ T+ L D  + ++              P+ K         ++  +NDK
Sbjct: 238 AIEKSTKNESSVRTIYLDDETIDIIKQWRNFYLKEQSQLPLTKLNISNEYMFSYISSNDK 297

Query: 262 -QKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
            + ++A   +        K  +   S HG R   AT+ ++ G          G  +    
Sbjct: 298 IEPLHADYINNVLNRIIKKHKLKPISPHGFRHTHATLMSEIGIDPSNTSKRLGHASSQVT 357

Query: 320 -ETYTK 324
            + YT 
Sbjct: 358 LDVYTH 363


>gi|15842199|ref|NP_337236.1| integrase [Mycobacterium tuberculosis CDC1551]
 gi|13882487|gb|AAK47050.1| integrase [Mycobacterium tuberculosis CDC1551]
          Length = 386

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 51/286 (17%), Positives = 98/286 (34%), Gaps = 31/286 (10%)

Query: 85  GSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRK-HTPSSAIQFLTSMRV 142
             +   +R  +    D  I+    D D R IT   +R    +    TP+      + +R 
Sbjct: 99  RGIKDRTRAHYRKLLDNHILATFADTDLRDITPAAVRRWYATTAVGTPTMRAHSYSLLRA 158

Query: 143 LFKWAVRQEYVAINPCL-SVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201
           + + A+  + +  NPC  S     R+   IRP T ++++       +  Q  +      +
Sbjct: 159 IMQTALADDLIDSNPCRISGASTARRVHKIRPATLDELETITKAMPDPYQAFV--LMAAW 216

Query: 202 SGLRCSDSCRAGVQHLQ---------------NNIFSIKTQKTGTII-TVELPDGFMKLL 245
             +R  +      + +                   F + T K+   +  + +P   +  +
Sbjct: 217 LAMRYGELTELRRKDIDLHGEVARVRRAVVRVGEGFKVTTPKSDAGVRDISIPPHLIPAI 276

Query: 246 ------AMTPIGKETFF--INNDKQKMNATQFSIWFKAKATKAG-VNKSAHGVRKFSATI 296
                  + P  +   F  +N+  + +  +     F      AG  +   H +R   A +
Sbjct: 277 EDHLHKHVNPGRESLLFPSVNDPNRHLAPSALYRMFYKARKAAGRPDLRVHDLRHSGAVL 336

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGAD-RIRLGIKNSRRISS 341
           +A  GAT  ELM   G  T   A  Y   A  R R       +++ 
Sbjct: 337 AASTGATLAELMQRLGHSTAGAALRYQHAAKGRDREIAALLSKLAE 382


>gi|312946178|gb|ADR27005.1| putative defective integrase; Qin prophage [Escherichia coli O83:H1
           str. NRG 857C]
          Length = 426

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 44/317 (13%), Positives = 96/317 (30%), Gaps = 64/317 (20%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK-ITTKHIRSGVESR-- 126
           T+K L  ++        +A  S  ++ +    I+   G+ +    I  + +    +    
Sbjct: 80  TIKELAEKFLALKE-TEVAKTSLNTYRAVIKNILSIIGEKNLASSINKEKLLEVRKELLT 138

Query: 127 --------------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
                           +  +   ++T++  +F++ V   Y+  NP   +   K       
Sbjct: 139 GYQIPKSNYIVTQPGRSAVTVNNYMTNLNAVFQFGVDNGYLPDNPFKGISPLKESRTIPD 198

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK----- 225
           P ++E+  +         Q +  +   +Y+G+R  + C  G + +   N    I+     
Sbjct: 199 PLSREEFIRLIDAC-RNQQAKNLWCVSVYTGVRPGELCALGWEDIDLKNGTMMIRRNLAK 257

Query: 226 --------TQKTGTIITV--ELPDGFMKLLAMTPIGKETFF------------------- 256
                      T  +I +     D     + +T + KE                      
Sbjct: 258 DRFTVPKTQAGTNRVIHLIKPAIDALRSQMTLTRLSKEHIIDVHLREYGRTEKQKCTFVF 317

Query: 257 -------INNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELM 308
                  + N             + A   +AG+ ++ ++  R   A  S  AGA    + 
Sbjct: 318 QPEVSARVKNYGDHFTVDSIRQMWDAAIKRAGLRHRKSYQSRHTYACWSLTAGANPAFIA 377

Query: 309 ATYGWKTVDQA-ETYTK 324
              G        + Y K
Sbjct: 378 NQMGHADAQMVFQVYGK 394


>gi|239625431|ref|ZP_04668462.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239519661|gb|EEQ59527.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 278

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 41/265 (15%), Positives = 80/265 (30%), Gaps = 19/265 (7%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
           +SEY         + N+   +           G+    K      +  +    + P+S  
Sbjct: 6   LSEYETYLRSEERSANTIAKYIRDLRAFFSFMGNEPLCKEAVVSFKGYLTE-SYAPASVN 64

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK----TEGIRPWTKEDMQQFKSFWSEGS 190
             L ++    +W            + V+  K +    T   +  T+E+  +      E  
Sbjct: 65  SMLAAVNGFLEW---SGMAQ----MKVKPLKIQKCLFTRPEKELTQEEYWRLIKAAEEKG 117

Query: 191 QPRLAFEF--LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE--LPDGFMKLLA 246
             RL+     +  +G+R S+     V+ ++     +  +    ++ +   L     +   
Sbjct: 118 NDRLSMLLQTICATGIRVSEVRHITVEAVRAGQAKVDCKGKNRVVFLPKVLCRALQRYCR 177

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGAT 303
              I     F     + +N T      KA   +AGV       H +R   A         
Sbjct: 178 RYGIDIGPVFKTASGKPLNRTNIWRDMKALCKRAGVEPGKVFPHNLRHLFARTYYKLEKD 237

Query: 304 AHELMATYGWKTVDQAETYTKGADR 328
              L    G  +V     YT  + R
Sbjct: 238 LSRLADLLGHSSVTTTRIYTMESGR 262


>gi|4210823|emb|CAA11470.1| intI1 [Pseudomonas aeruginosa]
          Length = 337

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 42/306 (13%), Positives = 93/306 (30%), Gaps = 62/306 (20%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129
           ++ + R+   +   ++ +  ++  +    IR  G      + +  + + +      RK +
Sbjct: 16  VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75

Query: 130 PSSAIQFLTSMRVLFK--WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            S+  Q L ++   +         ++       + RP+         T +++ +   F  
Sbjct: 76  VSTHRQALAALLFFYGKVLCTDLPWLQ-----EIGRPRPSRRLPVVLTPDEVVRILGFL- 129

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
           EG   RL  + L  +G+R S+  +  V+     +    ++  K      + LP+     L
Sbjct: 130 EGEH-RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPTL 188

Query: 246 AMTPIGKETFFINN---------------------------------------------D 260
                    +++ +                                              
Sbjct: 189 REQLSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVR 248

Query: 261 KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           +  M    F   FK    +AG+ K  + H +R   AT    +G     +    G   V  
Sbjct: 249 RHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVST 308

Query: 319 AETYTK 324
              YT 
Sbjct: 309 TMIYTH 314


>gi|86143473|ref|ZP_01061858.1| tyrosine type site-specific recombinase [Leeuwenhoekiella
           blandensis MED217]
 gi|85829920|gb|EAQ48381.1| tyrosine type site-specific recombinase [Leeuwenhoekiella
           blandensis MED217]
          Length = 414

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 46/263 (17%), Positives = 96/263 (36%), Gaps = 28/263 (10%)

Query: 107 GDFDYRKITTKHIRSGVESRKHTPS----SAIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162
            D+  R I    I       K   +    SA++++ + + + + A+  ++++ +P ++ +
Sbjct: 154 EDYRLRDIDHNFIIKFEHFLKTKRNCNHNSALKYVNNFKKIVRIALANKWISHDPFINYK 213

Query: 163 RPKRKTEGIRPWTKEDMQQFKSFWSEGSQ---PRLAFEFLLYSGLRCSDSCRAGVQHLQN 219
             K +       T+E++           +    R  F F  Y+GL  SD  +     +  
Sbjct: 214 -VKFEPVEREFLTQEEIDALWEKELHFERLILVRDMFVFSCYTGLAYSDVEKLSKSDITI 272

Query: 220 N-----IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF- 273
                    I   KTG+  ++ L     ++LA           +     + + Q S  F 
Sbjct: 273 GIDGSKWIRIHRTKTGSRSSIPLLPVAEQILARY-ENHPQVEESERVIPVLSNQKSNAFL 331

Query: 274 KAKATKAGVNK--SAHGVRKFSAT-ISADAGATAHELMATYGWKTVDQAETYTKGADRI- 329
           K  A    ++K  + H  R   AT ++   G     +    G +++   + Y K  DR  
Sbjct: 332 KEIAIMCDISKPLTTHLARHTFATTVTLTNGVPIETVSRMLGHQSLRTTQHYAKIVDRKI 391

Query: 330 ---------RLGIKNSRRISSVV 343
                    +L  + S++ S+  
Sbjct: 392 SDDMNILKEKLAAQKSKKESNTQ 414


>gi|194429446|ref|ZP_03061969.1| integrase [Escherichia coli B171]
 gi|194432824|ref|ZP_03065108.1| integrase [Shigella dysenteriae 1012]
 gi|194412507|gb|EDX28806.1| integrase [Escherichia coli B171]
 gi|194418812|gb|EDX34897.1| integrase [Shigella dysenteriae 1012]
 gi|195183060|dbj|BAG66620.1| putative integrase [Escherichia coli O111:H-]
 gi|332090165|gb|EGI95264.1| integrase [Shigella dysenteriae 155-74]
          Length = 334

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 55/311 (17%), Positives = 107/311 (34%), Gaps = 14/311 (4%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIP-AYMSALTGSTPKREYINSPRKKPTTLKWLISE 77
           G+ +   R    +  R+    +   +  A    +  +  KREYI   R +  TL  L+  
Sbjct: 9   GRYLLDIRPNGRKGKRVRKVFDKKSVAVATERYIMANAEKREYIQGYRDR-RTLNDLLEL 67

Query: 78  Y-RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF 136
           +          A   R    +  +++       D  K+     RS   +    PSSA ++
Sbjct: 68  WWMYHGQHRRKAEEDRKQLRNIINELGADMQAVDLDKLKIIAWRSQKIAEGLKPSSANRY 127

Query: 137 LTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195
           +  +  +F    +   + A +P   +         +   +++++        EG   R+A
Sbjct: 128 MNRLSGMFTVLKKIGLWDAEHPVRGISILYVSPREMAFLSQKEVALLLDTL-EGDYWRVA 186

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF 255
               L +G R S++C+   + + +N  +    K G   TV +     + +     G    
Sbjct: 187 L-LCLSTGARWSEACKLRGEQIVHNRVTFLETKNGRKRTVPISQAVCEAIKTRETGG--L 243

Query: 256 FINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKT 315
           F    ++      F +  K         ++AH +R   A+     G     L    G  T
Sbjct: 244 FEVKYRE------FCLALKRVKPDLPKGQAAHVLRHTFASHFVMNGGNIIALQKILGHAT 297

Query: 316 VDQAETYTKGA 326
           + Q   Y   A
Sbjct: 298 IQQTMAYAHFA 308


>gi|187476668|ref|YP_784691.1| site-specific tyrosine recombinase XerC [Bordetella avium 197N]
 gi|115421254|emb|CAJ47759.1| tyrosine recombinase [Bordetella avium 197N]
          Length = 325

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 41/281 (14%), Positives = 84/281 (29%), Gaps = 42/281 (14%)

Query: 85  GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIR---SGVESRKHTPSSAIQFLTS 139
              + ++  ++    + +   +       + ++  HIR   + + ++   P S  + L +
Sbjct: 19  RRYSSHTLAAYRHDLESLAALATQAGLALQDLSVSHIRQQIARLHAQGLGPRSLARRLAA 78

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-------GSQP 192
            R  ++W      +A NP   V  PK      +  + +  Q                 + 
Sbjct: 79  WRGFYQWWAPHIGLARNPVAGVRAPKAPRALPKALSVDQAQAMLDHAPAQLSTDPVSLRD 138

Query: 193 RLAFEFLLYSGLRCSDSCRA--------------GVQHLQNNIFSIKTQKTGTIITVELP 238
               E L  SGLR S+                  G  + +     +   K G    V + 
Sbjct: 139 HAISELLYSSGLRLSELVSLDTHYHRHTGSEEPAGWLN-RAEAEVVVLGKGGKRRIVPVG 197

Query: 239 DGFMKLL------------AMTPIGKE-TFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284
              +  L            A TP       F+     +++     +     A +AGV   
Sbjct: 198 SAALAALDKWLQARPTLLSAATPAADSYALFLGARGARISPRVVQLQLARLAQQAGVPAH 257

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              H +R   A+    +      +    G   +   + YT+
Sbjct: 258 VHPHVLRHSFASHVLQSAQDLRAVQELLGHANIATTQVYTR 298


>gi|323180893|gb|EFZ66431.1| phage integrase family protein [Escherichia coli 1180]
          Length = 431

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 45/317 (14%), Positives = 97/317 (30%), Gaps = 64/317 (20%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK-ITTKHIRSGVESR-- 126
           T+K L  ++        +A  S  ++ +    I+   G+ +    I  + +    +    
Sbjct: 85  TIKELAEKFLALKE-NEVAKTSLNTYRAVIKNILSIIGEKNLASSINKEKLLEVRKELLT 143

Query: 127 --------------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
                           +  +   ++T++  +F++ V   Y+A NP   +   K       
Sbjct: 144 GYQIPKSNYIVTQPGRSAVTVNNYMTNLNAVFQFGVDNGYLADNPFKGISPLKESRTIPD 203

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK----- 225
           P ++E+  +         Q +  +   +Y+G+R  + C  G + +   N    I+     
Sbjct: 204 PLSREEFIRLIDAC-RNQQAKNLWCVSVYTGVRPGELCALGWEDIDLKNGTMMIRRNLAK 262

Query: 226 --------TQKTGTIITV--ELPDGFMKLLAMTPIGKETFF------------------- 256
                      T  +I +     D     + +T + KE                      
Sbjct: 263 DRFTVPKTQAGTNRVIHLIKPAIDALRSQMTLTRLSKEHIIDVHLKEYGRTEKQKCTFVF 322

Query: 257 -------INNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELM 308
                  + N             + A   +AG+ ++ ++  R   A  S  AGA    + 
Sbjct: 323 QPEVSARVKNYGDHFTVDSIRQMWDAAIKRAGLRHRKSYQSRHTYACWSLTAGANPAFIA 382

Query: 309 ATYGWKTVDQA-ETYTK 324
              G        + Y K
Sbjct: 383 NQMGHADAQMVFQVYGK 399


>gi|284038161|ref|YP_003388091.1| integrase family protein [Spirosoma linguale DSM 74]
 gi|283817454|gb|ADB39292.1| integrase family protein [Spirosoma linguale DSM 74]
          Length = 372

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/269 (14%), Positives = 83/269 (30%), Gaps = 25/269 (9%)

Query: 92  RISFESYFDQIIR-KSGDFDYRKITTKHIRSGVE-------SRKHTPSSAIQFLT---SM 140
           +  +ES    +     G      +T K  R            R   P +    ++     
Sbjct: 108 KDGWESALHYLRDFTGGQLKLSNLTPKKCRDFRAYMMDAKSQRNEEPLAVNSTVSYFNKF 167

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF-KSFWSEGSQPRLAFEFL 199
           +   K A     + ++    +E  K +       T  ++Q   ++        + A  F 
Sbjct: 168 KAALKQAYIDGLINVDLNAKIESIKPEETRREYLTLAELQTLVQTDLPALPILKQAALFS 227

Query: 200 LYSGLRCSDSCRAGVQHLQ-----NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254
             +GLR SD      + ++             QKT  +  + + +  + LL       + 
Sbjct: 228 ALTGLRYSDIEALTWEQIRHDASSGYFIHFTQQKTRGVEVLPISELAVALLGTRLGDSQP 287

Query: 255 FFINNDKQKMNATQFSIWF-KAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATY 311
                    +  +       K     AG+ K  + H  R   AT+    G   + +    
Sbjct: 288 VL-----PGLIYSAHWNKILKQWVKDAGITKPITFHSFRHTYATLQLSLGTDIYTVSKML 342

Query: 312 GWKTVDQAETYTKGADRIRLGIKNSRRIS 340
           G + +   + Y K  D+ +    +  +++
Sbjct: 343 GHRELKTTQIYAKIVDQSKRDAADKIKLT 371


>gi|191168738|ref|ZP_03030516.1| Int [Escherichia coli B7A]
 gi|331658405|ref|ZP_08359367.1| integrase [Escherichia coli TA206]
 gi|190901228|gb|EDV60999.1| Int [Escherichia coli B7A]
 gi|323172004|gb|EFZ57648.1| integrase [Escherichia coli LT-68]
 gi|331056653|gb|EGI28662.1| integrase [Escherichia coli TA206]
          Length = 334

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 55/311 (17%), Positives = 107/311 (34%), Gaps = 14/311 (4%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIP-AYMSALTGSTPKREYINSPRKKPTTLKWLISE 77
           G+ +   R    +  R+    +   +  A    +  +  KREYI   R +  TL  L+  
Sbjct: 9   GRYLLDIRPNGRKGKRVRKVFDKKSVAVATERYIMANAEKREYIQGYRDR-RTLNDLLEL 67

Query: 78  Y-RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF 136
           +          A   R    +  +++       D  K+     RS   +    PSSA ++
Sbjct: 68  WWMYHGQHRRKAEEDRKQLRNIINELGADMQAVDLDKLKIIAWRSQKIADGLKPSSANRY 127

Query: 137 LTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195
           +  +  +F    +   + A +P   +         +   +++++        EG   R+A
Sbjct: 128 MNRLSGMFTVLKKIGLWDAEHPVRGISILYVSPREMAFLSQKEVALLLDTL-EGDYWRVA 186

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF 255
               L +G R S++C+   + + +N  +    K G   TV +     + +     G    
Sbjct: 187 L-LCLSTGARWSEACKLRGEQIVHNRVTFLETKNGRKRTVPISQAVCEAIKTRETGG--L 243

Query: 256 FINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKT 315
           F    ++      F +  K         ++AH +R   A+     G     L    G  T
Sbjct: 244 FEVKYRE------FCLALKRVKPDLPKGQAAHVLRHTFASHFVMNGGNIIALQKILGHAT 297

Query: 316 VDQAETYTKGA 326
           + Q   Y   A
Sbjct: 298 IQQTMAYAHFA 308


>gi|300765731|ref|ZP_07075708.1| integrase [Listeria monocytogenes FSL N1-017]
 gi|300513604|gb|EFK40674.1| integrase [Listeria monocytogenes FSL N1-017]
          Length = 400

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 55/362 (15%), Positives = 103/362 (28%), Gaps = 60/362 (16%)

Query: 23  YYFRKG-----HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS- 76
           +  R        G  IR      +         L     + E          T K  +  
Sbjct: 22  WRMRVTVGYDYKGTPIRAGRTTRTKNEREREKELRNFITELEQNGYTAPARMTFKAFVEN 81

Query: 77  EYRKSAHWGSLAVNSRISF-ESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH------- 128
           EY       +L V +   + +S   +     G     KITT HI + V   +        
Sbjct: 82  EYMPKHAQNNLEVKTWTEYYKSIVARAYPAFGGVQMDKITTLHIVNLVAKLQKPGARLDV 141

Query: 129 -------------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
                        +P S      ++  +F+ AV  + + INP   V  PK        +T
Sbjct: 142 KPTDSDEKKNKPLSPRSIRNIYFAINSVFETAVEWKVIPINPAEGVRLPKTTKRPPTIYT 201

Query: 176 KEDMQQFKSFW-SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKT------ 226
             +++   +    E  + ++     L SG R ++     V+H+    +  + +       
Sbjct: 202 PAEIELLNAALVKEPLRLQVMIYIALISGCREAELAALEVKHVNLIEDEITFEQTLVAKA 261

Query: 227 ---------QKTGTIITVELPDGFMKLLAMTP-------------IGKETFFINNDKQKM 264
                     K      V +P     L+                    +  F N + + +
Sbjct: 262 GEGLLLKESTKNDVAGIVSIPAWLTNLIETYISNEVLDLKTEGKWANHKFLFANMEGKPI 321

Query: 265 NATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGW-KTVDQAETY 322
                   +K    +  +     H +R  SAT+  + G     +        +V  +  Y
Sbjct: 322 RPDSIYQRWKRFLERHNLPVIRFHDLRHTSATLLLNKGRDIKIIQERLRHKSSVTTSNIY 381

Query: 323 TK 324
             
Sbjct: 382 AH 383


>gi|326789825|ref|YP_004307646.1| integrase family protein [Clostridium lentocellum DSM 5427]
 gi|326540589|gb|ADZ82448.1| integrase family protein [Clostridium lentocellum DSM 5427]
          Length = 376

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 63/354 (17%), Positives = 119/354 (33%), Gaps = 62/354 (17%)

Query: 18  HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT-----LK 72
           HG + + FR      ++   P+   F      A       +  ++  R    T       
Sbjct: 6   HGNV-WRFRI-----MKDGIPYTKLFEGTEKKAKEAHEAFK--VDVKRGNVGTNENMKFN 57

Query: 73  WLI----SEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRK 127
            L      +Y K     +   ++   +++ ++  ++   GD     I   HI+  V    
Sbjct: 58  ELCQLVTDQYVK----VNCKYSTVEFYKNTYNTHLLPFFGDKKLSSIKPLHIQQFVTHLS 113

Query: 128 H---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP---KRKTEGIRPWTKEDMQQ 181
                PS+    L+ ++  F+ AV+ E +  NPC+ V+RP   K +  G +  T ++M++
Sbjct: 114 ELDLAPSTVSNNLSCLKKTFEMAVKWELIIKNPCMYVDRPQKRKYQNRG-QLMTVDEMKK 172

Query: 182 FKSFWS----EGSQPR-LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK-------T 229
               +     + S     AF   L  GLR S+     +  +      I+  K        
Sbjct: 173 LLEIYENLSTKPSHMHKCAFYIALGCGLRNSEIRALTLDDIDFENNIIRVNKQFGKYTEK 232

Query: 230 GTII-------------TVELPDGFMKL-------LAMTPIGKETFFINNDKQKMNATQF 269
           G ++              +  PD  +         L   P+ K+ F+     + +     
Sbjct: 233 GKVVEGYITTKSESSIRDIYAPDFVIAAIKNYISTLDCIPLSKQLFWSARTNKPVGRQCL 292

Query: 270 SIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           S +F        +     H +R   AT+ A  G     L    G   ++    Y
Sbjct: 293 STFFTNILKNNNLPVIDFHDLRHLHATLLASKGVNMKSLSNRMGHSKLETTNIY 346


>gi|268609386|ref|ZP_06143113.1| putative integrase [Ruminococcus flavefaciens FD-1]
          Length = 328

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/262 (14%), Positives = 86/262 (32%), Gaps = 14/262 (5%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129
           ++SE+  +      +  S   +       +   G    + ITT  +R+ +      +K +
Sbjct: 53  ILSEFLSAKRIEGCSEKSLNYYSKTITAALDSIGKG-IKHITTDDLRAYLTDYQAEKKSS 111

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
             +       +   F W   ++Y+  +P   +   K        +T E+++  +    E 
Sbjct: 112 KVTMDNIRRILSSFFSWLEDEDYIIKSPVRRIHNVKTSKTIKETYTDENLELMRDNCVE- 170

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDG----FMKL 244
            +     + L  +G+R  +        +  N    +   K      V             
Sbjct: 171 LRDLAMIDMLASTGMRVGEMVLLNRSDIDFNERECVVVGKGDKERMVYFDARTKLHLQSY 230

Query: 245 LAMTPIGKETFFINNDK--QKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG 301
           LA         F++     +++      +  +    K G++K   H  R+  AT++ D G
Sbjct: 231 LASRTDSDSALFVSLRSPHKRLTIGAIELRLREMGRKLGISKVHPHKFRRTLATMAIDKG 290

Query: 302 ATAHELMATYGWKTVDQAETYT 323
               +L    G + +D    Y 
Sbjct: 291 MPIEQLQRLLGHQRIDTTLQYA 312


>gi|312984164|ref|ZP_07791510.1| phage integrase [Lactobacillus crispatus CTV-05]
 gi|310894383|gb|EFQ43459.1| phage integrase [Lactobacillus crispatus CTV-05]
          Length = 371

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/283 (13%), Positives = 87/283 (30%), Gaps = 30/283 (10%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK-HT 129
                 ++ K     S+   +++++   F  I +  G    + I     +  +       
Sbjct: 70  FADYCDKWIKIYKLPSVRPATKLTYNKRFKYIKQFFGTTKIKDIDRTMYQKFINWYGEDH 129

Query: 130 PSSAIQFLTSMRVLFKWA-VRQEYVAINPCLSVERPKR--KTEGIRPWTKEDMQQFKSFW 186
            +S+   +  +     +A +    ++ N    +       KT+ I    + +++   S  
Sbjct: 130 ATSSTHKMNILVKSCVFAAIDDGLISRNFTNQITIHGNDDKTKKIEYLNEHEIKALVSEL 189

Query: 187 SEGSQPR-----LAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ-----------K 228
               QPR     L     LY+G R  +        +   +   SI              K
Sbjct: 190 KTNLQPRYTSNYLILA-GLYTGARLGELSALHWSDIDFKHKTISITKSWNQDRKEMGKPK 248

Query: 229 TGTIIT-VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI--WFKAKATKAGVNKS 285
           T   +  + + D  + +++        F     + KM  T  ++    K   +KAG+ K 
Sbjct: 249 TKNSVRKIPVNDEILNIISQLKANHFDFVFATSRTKMPPTACAVNDALKRNLSKAGITKQ 308

Query: 286 ---AHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
               H +R              + +    G   +    + Y +
Sbjct: 309 GYHFHSLRHTHVAYLISHHVDIYSISRRLGHAKISTTLDIYAQ 351


>gi|291542827|emb|CBL15937.1| Site-specific recombinase XerD [Ruminococcus bromii L2-63]
          Length = 397

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 48/331 (14%), Positives = 100/331 (30%), Gaps = 59/331 (17%)

Query: 48  MSALTGSTPKREYINSPRKKP-TTLKWLISEYRKSAHWGSLA-----VNSRISFE----- 96
            +A       R    S  K P  T+  L + +     W  +        +  ++      
Sbjct: 52  RAAKEAELEARAIERSTGKAPAGTI--LFTAFLL--DWLDMTKKNVEETTYGAYSMTIKS 107

Query: 97  SYFDQIIRKSGDFDYRKITTKHIRSG----VESRKHTPSSAIQFLTSMRVLFKWAVRQEY 152
                           ++T KHI+      +  R  + ++ I    ++R   + A +   
Sbjct: 108 KIIPYFEEHHPGLALCEVTPKHIQDYYTYELTVRGVSANTVIHRHANIRKALQHAFKLGL 167

Query: 153 VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRA 212
           +  NP   +ERPK++      + + ++ +       G    L      + GLR S++   
Sbjct: 168 IDTNPADRIERPKKEKFVGSVYEEYELNRLFEIVK-GDPIELGVILGAFYGLRRSEAVGL 226

Query: 213 GVQHLQ-----------------NNIFSI----KTQKTGTIITVELPDGFMKLLAMTPIG 251
               +                  +    I    +T+   +  ++ L   F +LL      
Sbjct: 227 KWDAIDFKKKTITIRHTVTQATIDGKSKIIQKDRTKTKSSYRSLPLVPPFEELLHRLKAQ 286

Query: 252 KE----------------TFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSA 294
           +E                  ++N   + +     +  F     K G+ K   H +R   A
Sbjct: 287 QELNQKLCGRSYCKKYTGYIYVNEIGELVKPGYLTQHFPLILQKNGMRKIRFHDLRHSCA 346

Query: 295 TISADAGATAHELMATYGWKTVDQAE-TYTK 324
           ++    G +  E+    G   +      YT 
Sbjct: 347 SLLYANGVSLKEIQEWLGHSDISTTSNIYTH 377


>gi|241992592|gb|ACS73649.1| IntI1 [uncultured bacterium]
          Length = 337

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 42/306 (13%), Positives = 93/306 (30%), Gaps = 62/306 (20%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129
           ++ + R+   +   ++ +  ++  +    IR  G      + +  + + +      RK +
Sbjct: 16  VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75

Query: 130 PSSAIQFLTSMRVLFK--WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            S+  Q L ++   +         ++       + RP+         T +++ +   F  
Sbjct: 76  VSTHRQALAALLFFYGKVLCTDLPWLQ-----EIGRPRPSRRLPVVLTPDEVVRILGFL- 129

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
           EG   RL  + L  +G+R S+  +  V+     +    ++  K      + LP+     L
Sbjct: 130 EGEH-RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSL 188

Query: 246 AMTPIGKETFFINN---------------------------------------------D 260
                    +++ +                                              
Sbjct: 189 REQLSRARAWWLKDQAEGRSGVALPDALEREYPRAGHSWPWFWVFAQHTHSTDPRSGVVR 248

Query: 261 KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           +  M    F   FK    +AG+ K  + H +R   AT    +G     +    G   V  
Sbjct: 249 RHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVST 308

Query: 319 AETYTK 324
              YT 
Sbjct: 309 TMIYTH 314


>gi|284991405|ref|YP_003409959.1| integrase family protein [Geodermatophilus obscurus DSM 43160]
 gi|284064650|gb|ADB75588.1| integrase family protein [Geodermatophilus obscurus DSM 43160]
          Length = 377

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 45/346 (13%), Positives = 108/346 (31%), Gaps = 44/346 (12%)

Query: 22  IYY----FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISE 77
            +Y    +R   G   R      +       + L     + E     +    T+   + +
Sbjct: 18  RWYSALTYRDDFGEVKRREVSGRTQ--AEVRAKLRELRERVEAGAPVKDASITMAAWLED 75

Query: 78  YR-KSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH---TPSS 132
           +  K+         +   + +     ++ K G     ++   ++ + V +++    + SS
Sbjct: 76  WTTKALPASDRKQATIDLYATIARSHLVPKLGSLPLDRLRPSNVEALVLAKRRAGLSASS 135

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
                  +R     AVR   +  NP   V+RP  + +     + +  +        G + 
Sbjct: 136 VRTIYAVLRAALDVAVRDGLIQRNPAALVKRPAVERKDAGYLSAQQAEALLEAV-RGDRL 194

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK------------------TQKTGTIIT 234
              +  +L +GLR  ++     + +  +   ++                  T+K+   + 
Sbjct: 195 EALYRVMLATGLRRGEALALHWRDVDLDAAVVRVRWTLSRTSAGLELGEPKTEKSRRTVP 254

Query: 235 VELP--DGFMKLLAMTPIGKET----------FFINNDKQKMNATQFSIWFKAKATKAGV 282
           + +P  +            +             F +     +        F+A A +AG+
Sbjct: 255 LPVPAVETLRAHRKRQAAEQLAAGSLWQASGLVFTSEIGTPLEPRNVLRRFEALAERAGL 314

Query: 283 NK-SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGA 326
                H +R  +A+    AG     +    G  +    A+ Y+  A
Sbjct: 315 RGVHLHTLRHSAASFLLAAGTHTKVVQEHLGHSSYAITADIYSHVA 360


>gi|134101615|ref|YP_001107276.1| phage integrase family site specific recombinase [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133914238|emb|CAM04351.1| site-specific recombinase, phage integrase family
           [Saccharopolyspora erythraea NRRL 2338]
          Length = 316

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 48/298 (16%), Positives = 93/298 (31%), Gaps = 29/298 (9%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-----------FDYRKITTKH 118
           T    + ++ +S   G+    +R ++     Q+ R   +            D  ++   H
Sbjct: 13  TWAGYLRDWDRSLRSGNRPETTRYNYVLAAAQLARYLAEHAPDPEADAAAEDPAEVAKAH 72

Query: 119 IRSGVESRKHTPSSAIQFLT--SMRVLFKWA-VRQEYVAINPCLSVERPKRKTEGIRPWT 175
           I +       T S+A       +++ LFKW  + +E +  +P   V  PK  T+ +    
Sbjct: 73  IEAFQAWMIETRSAATAVNKHKALQQLFKWLMLDEEEIDRSPMERVRLPKAPTKLVPVLE 132

Query: 176 KEDMQQFKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---------NNIF 222
           +E   +             + +        +G R ++     ++ +              
Sbjct: 133 EEATTRLLEVCKGKDFLSLRDQAIIRLFCNTGARLAEVAHLRLEDVDLKTESVTLYGKGG 192

Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK-QKMNATQFSIWFKAKATKAG 281
            ++  + G      L                  ++ +   Q +NA    I  K    +AG
Sbjct: 193 KVRRVRMGARTARALSRYLRARAKRKGADLPNLWLADRGGQALNANGIKIRLKRLGQRAG 252

Query: 282 VNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338
           ++   AH  R   A     AG    +LM   GW +      Y   A   R      R 
Sbjct: 253 LDHVHAHRWRHTYAHQWKRAGGDTGDLMLLLGWSSDAMPRHYGASAAAERAQESQVRM 310


>gi|28868299|ref|NP_790918.1| integrase/recombinase XerD [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|28851536|gb|AAO54613.1| integrase/recombinase XerD, putative [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 296

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 52/283 (18%), Positives = 90/283 (31%), Gaps = 30/283 (10%)

Query: 89  VNSRISFESY---FDQIIRKSGDFDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRVL 143
            N+R ++      F    +  G     +++  H+ + +E +  T    S  Q L ++R L
Sbjct: 14  PNTRRAYARATQEFLTWCQVVGVPSLTEVSPLHVATWIELQMQTLAAPSVKQRLAAIRHL 73

Query: 144 FKWAVRQEYVAINPCLSVERPKR-----KTEGIRPWTKEDM-QQFKSFWSEGSQPRLAFE 197
           F W V  + V  NP  SV  P       KT  + P     +          G + R    
Sbjct: 74  FDWLVVGQVVPHNPAASVRGPSHTSRTGKTPVLEPLEARQLLDSIDICTPAGLRDRALIA 133

Query: 198 FLLYSGLRCSDSCRAGVQH--LQNNIFSIK-TQKTGTIITVELPDGFMKLLAM------- 247
            +++S  R   +    V+   +QN    ++  +K G    +         L         
Sbjct: 134 LMVFSFARIGAALAMKVEDVYIQNQRLWVRLKEKGGKQHVMPCQHSLEAYLHAYLVETGI 193

Query: 248 --TPIGKETFFINNDKQKMNATQFSI-----WFKAKATKAGVNKSA--HGVRKFSATISA 298
              P G     I    ++++             + +A  AG+  S   H  R    T   
Sbjct: 194 DNDPKGPLFRTIGRGTEQLSVNALPQANAHAMVRRRALAAGIKTSIGNHTFRATGITAYL 253

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
             G T     A     +    + Y +  D I L      R+  
Sbjct: 254 KNGGTLENAAAMANHASTRTTQLYDRRRDEISLDEVERIRLDR 296


>gi|327490261|gb|EGF22049.1| phage integrase family integrase/recombinase [Streptococcus
           sanguinis SK1058]
          Length = 328

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 36/279 (12%), Positives = 89/279 (31%), Gaps = 15/279 (5%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES----RKHT 129
           L+  +  +      +  S   ++   + ++        R +TT  +R+ +      RK +
Sbjct: 53  LLELFISAKRIEGCSEKSLKYYKIVIENMLTSL-KTSIRDLTTSDLRTYLARYQQERKSS 111

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
             +           F W   ++Y+  +P   + + K        ++ E ++  +    + 
Sbjct: 112 KVTIDNMRRIFSSFFGWLEDEDYILKSPVRRIHKIKTDKTIKETFSDEGLELLRDACDK- 170

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG-----FMKL 244
            +     + L  +G+R  +  R   + +            G    +   D       +  
Sbjct: 171 IRDLAMIDLLASTGMRVGELVRLNREDINFYERECVVFGKGNSERIVYFDARTKIHLINY 230

Query: 245 LAMTPIGKETFF--INNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG 301
           L          F  +++   ++         +    KA +NK   H  R+  AT + D G
Sbjct: 231 LDSRQDDNPALFVSLSSPHDRLLIGGVETRLRQLGQKADLNKVHPHKFRRTLATRAIDKG 290

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
               ++    G   +D    Y    ++  +   + + I 
Sbjct: 291 MPIEQVQHLLGHVKIDTTMHYA-MVNQANVKNSHRKYIG 328


>gi|317476899|ref|ZP_07936142.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
 gi|316907074|gb|EFV28785.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
          Length = 368

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 38/214 (17%), Positives = 82/214 (38%), Gaps = 14/214 (6%)

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           + +SA  + ++ R L K A +++ +  N    +++ + K    +  T  ++++  +   +
Sbjct: 157 SRNSAAGYFSTFRALLKIAYQEKMLRENLNDFIDKIEWKEVKKQYLTLAEVKKLAATPCK 216

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVELPDGFMK 243
               + A  F   +GLR SD  +    +++          I T+KT T  T+ + +  ++
Sbjct: 217 IPVLKQASLFSCMTGLRISDILQLTWDNIEVGPDNGYYIRICTEKTETEATLPISNEALE 276

Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301
            L   P     F      + +     +   K   ++AG+ K  + H  R   A I    G
Sbjct: 277 -LCGIPDSGRVF------KGLTRAMTNQPLKQWISEAGIKKHITFHCFRHSYAVIQISLG 329

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335
              + +      K V   + Y    +  +    N
Sbjct: 330 TDIYTVSKMLTHKNVSTTQIYADLVNSKKRETAN 363


>gi|302387143|ref|YP_003822965.1| integrase family protein [Clostridium saccharolyticum WM1]
 gi|302197771|gb|ADL05342.1| integrase family protein [Clostridium saccharolyticum WM1]
          Length = 407

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 46/278 (16%), Positives = 88/278 (31%), Gaps = 24/278 (8%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRK 127
            +  I  +       + A  +         +        G      IT +HI S V    
Sbjct: 110 FRQAILSFTDHCKKRNNADQTIQRRIRVIHKFFEHLTGSGVDACNDITPQHISSFVTGLA 169

Query: 128 -HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP--WTKEDMQQFKS 184
            ++  ++ Q+L S+RV FK          +   SV       +   P  W+  D++Q  S
Sbjct: 170 GYSKKTSDQYLESLRVFFKSLYFSGQRKDDLSKSVPTLYYPKQDRIPSVWSANDIEQLLS 229

Query: 185 FW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELP 238
                  +G +       +   GLR SD     ++++    +      QKTG  + + + 
Sbjct: 230 VIDRGNPKGKRDYALIFLVTQLGLRTSDVLNLKLENINWSESRIEFVQQKTGISVNLPIV 289

Query: 239 DGFMKLL-----AMTPIGKETFFINNDKQKMNATQFSI-WFKAKATKAGV------NKSA 286
           +     +        P   E +      Q  +  +           KAG+      +   
Sbjct: 290 EDLGMAIIDYLKYGRPKSNEPYLFLKHIQPFDRMKNGHYLITQYLVKAGIPLKTAKHHGL 349

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           H +R   A+   +       + +  G  TV+  + Y  
Sbjct: 350 HSLRHTLASRLLEQDVPLEIISSILGHTTVESTKPYLH 387


>gi|300821556|ref|ZP_07101703.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 119-7]
 gi|300526059|gb|EFK47128.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 119-7]
          Length = 431

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 45/317 (14%), Positives = 97/317 (30%), Gaps = 64/317 (20%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK-ITTKHIRSGVESR-- 126
           T+K L  ++        +A  S  ++ +    I+   G+ +    I  + +    +    
Sbjct: 85  TIKELAEKFLALKE-TEVAKTSLNTYRAVIKNILSIIGEKNLASSINKEKLLEVRKELLT 143

Query: 127 --------------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
                           +  +   ++T++  +F++ V   Y+A NP   +   K       
Sbjct: 144 GYQIPKSNYIVTQPGRSAVTVNNYMTNLNAVFQFGVDNGYLADNPFKGISPLKESRTIPD 203

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK----- 225
           P ++E+  +         Q +  +   +Y+G+R  + C  G + +   N    I+     
Sbjct: 204 PLSREEFIRLIDAC-RNQQAKNLWCVSVYTGVRPGELCALGWEDIDLKNGTMMIRRNLAK 262

Query: 226 --------TQKTGTIITV--ELPDGFMKLLAMTPIGKETFF------------------- 256
                      T  +I +     D     + +T + KE                      
Sbjct: 263 DRFTVPKTQAGTNRVIHLIKPAIDALRSQMTLTRLSKEHIIDVHLREYGRTEKQKCTFVF 322

Query: 257 -------INNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELM 308
                  + N             + A   +AG+ ++ ++  R   A  S  AGA    + 
Sbjct: 323 QPEVSARVKNYGDHFTVDSIRQMWDAAIKRAGLRHRKSYQSRHTYACWSLTAGANPAFIA 382

Query: 309 ATYGWKTVDQA-ETYTK 324
              G        + Y K
Sbjct: 383 NQMGHADAQMVFQVYGK 399


>gi|257068693|ref|YP_003154948.1| tyrosine recombinase XerD subunit [Brachybacterium faecium DSM
           4810]
 gi|256559511|gb|ACU85358.1| tyrosine recombinase XerD subunit [Brachybacterium faecium DSM
           4810]
          Length = 332

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 42/290 (14%), Positives = 89/290 (30%), Gaps = 39/290 (13%)

Query: 74  LISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKHTP 130
           ++ +Y         L+ N+  ++     + + +    D D   +  + +   ++S +   
Sbjct: 22  ILEQYLSHLRIERGLSANTLAAYRRDLRRYLAELARRDIDATAVDPQQLGRWLQSLRTGA 81

Query: 131 --------SSAIQFLTSMRVLFKWAVRQEYVAI-NPCLSVERPKRKTEGIRPWTKEDMQQ 181
                   SSA + L ++R L  +   +   +  +P   V  P        P     ++ 
Sbjct: 82  DGGSVLSASSAARSLAAVRGLHSFLDAERVSSSGDPARLVPSPALPRRLPHPLAIAQVEA 141

Query: 182 F----------KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQKTG 230
                      +   +   + R   E L   G R S++    V  +      ++   K  
Sbjct: 142 LIEAAGRPSTGRDATARALRDRALLEVLYGLGARISEATGLDVDDIDAQERAAVLRGKGD 201

Query: 231 TIITVELPDGFMKLL-----------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATK 279
               V +    ++ L           A    G    F+ +   ++         +  A  
Sbjct: 202 KHRVVPVGRFALEALEAYLTRGRPVLAARGTGTPAIFLGSRGTRLTRQAAWQVVQRAADA 261

Query: 280 AGV-----NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           A +       S H +R   AT     GA    +    G  +V   + YT+
Sbjct: 262 AELSDLPEPISPHTLRHSYATHLLHGGADVRAVQELLGHASVTTTQLYTQ 311


>gi|74311839|ref|YP_310258.1| putative phage integrase protein [Shigella sonnei Ss046]
 gi|73855316|gb|AAZ88023.1| putative phage integrase protein [Shigella sonnei Ss046]
          Length = 358

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 43/280 (15%), Positives = 91/280 (32%), Gaps = 34/280 (12%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--K 127
           T+   I  Y+       ++ N+     +  + I  K G+    +ITT+HI   ++     
Sbjct: 75  TMADWIERYKTILIRRKVSRNTYKIRANQLETIKEKLGEILLTEITTRHIAEFLDLWIEG 134

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ-QFKSFW 186
              + A    + +  +F+ A+ +  ++ NP      PK         T+E ++ +  +  
Sbjct: 135 GKNTMAGSMRSVLSDMFREAIVEGRISQNPVTPTRAPKIVV------TRERLKLKIYNCI 188

Query: 187 SEGSQPR-----LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241
            E +        LA +  L +G R  D        + ++   ++  KTG +I + L    
Sbjct: 189 REAADQLPAWFPLAMDLALVTGQRREDITNMRFSDIYDDRLHVRQIKTGMMIAIPLSLSL 248

Query: 242 MKL--------LAMTPIGKETFFINNDKQKMN------ATQFSIWFKAKATKAGV----- 282
                           + +  + I+   +K +          +  F A     G+     
Sbjct: 249 PVAGLRLGTVVERCRLVSRGDYLISAGIRKNSPDGSIHPDGLTKKFVAARKFTGIQFSEN 308

Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
             + H +R   A                 G  +    + Y
Sbjct: 309 PPTFHEIR-SLAGRLYKETCGEEFAQRLLGHTSEKTTKMY 347


>gi|241992572|gb|ACS73635.1| IntI1 [uncultured bacterium]
          Length = 315

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 42/306 (13%), Positives = 93/306 (30%), Gaps = 62/306 (20%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129
           ++ + R+   +   ++ +  ++  +    IR  G      + +  + + +      RK +
Sbjct: 16  VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRSHGVRHPATLGSSEVEAFLSWLANERKVS 75

Query: 130 PSSAIQFLTSMRVLFK--WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            S+  Q L ++   +         ++       + RP+         T +++ +   F  
Sbjct: 76  VSTHRQALAALLFFYGKVLCTDLPWLQ-----EIGRPRPSRRLPVVLTPDEVVRILGFL- 129

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
           EG   RL  + L  +G+R S+  +  V+     +    ++  K      + LP+     L
Sbjct: 130 EGEH-RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSL 188

Query: 246 AMTPIGKETFFINN---------------------------------------------D 260
                    +++ +                                              
Sbjct: 189 REQLSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVR 248

Query: 261 KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           +  M    F   FK    +AG+ K  + H +R   AT    +G     +    G   V  
Sbjct: 249 RHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVST 308

Query: 319 AETYTK 324
              YT 
Sbjct: 309 TMIYTH 314


>gi|41179288|ref|NP_958506.1| putative integrase [Lactobacillus prophage Lj928]
 gi|42519337|ref|NP_965267.1| Lj928 prophage integrase [Lactobacillus johnsonii NCC 533]
 gi|38731417|gb|AAR27347.1| putative integrase [Lactobacillus prophage Lj928]
 gi|41583625|gb|AAS09233.1| Lj928 prophage integrase [Lactobacillus prophage Lj928]
          Length = 391

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 52/309 (16%), Positives = 106/309 (34%), Gaps = 50/309 (16%)

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGV 123
           ++K   +  L   + ++     +  ++    +  FD  +I   G+    KIT   ++   
Sbjct: 66  KQKQIKVAELRELWFENYK-TQVKESTANKNKQVFDNHVIPAFGNQYIDKITVAELQKWA 124

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-----PWTKED 178
           + +          +     LF++ +R  YV+ NP   +  PK+ +   R      +T+++
Sbjct: 125 DRKAKQIVKYRDAINEFNALFEYGIRLNYVSENPLKRIIIPKKTSRPRRDTEHNVYTQDE 184

Query: 179 MQQFKSFWSE-GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-------- 229
           + QF     + G  P   F+ L  +GLR S++       +     ++   KT        
Sbjct: 185 LNQFLEVAKDYGLVPYTYFKLLSATGLRKSEALALTWSDINLTAGTLSVNKTLAYGLNGK 244

Query: 230 ---------GTIITVELPDGFMKLL----AMTPIGKETFFINNDKQKMNATQFSIWFK-- 274
                     +   + + DG  ++L        I  +  F  N    +  ++   W K  
Sbjct: 245 TIIQPPKSPKSKRILPISDGLKEVLIDYKRKQKIISKELFHTNKGTYLRISKPDQWLKSI 304

Query: 275 ------AKATKAG-----------VNKSAHGVRKFSATIS-ADAGATAHELMATYGWKTV 316
                  KA  A             + + HG R   AT+  A+       +    G + +
Sbjct: 305 YAKDHEEKAEYAKKYNLKEPQPDLRHITVHGFRHTFATLLIAETNVKPKTVQMLLGHENI 364

Query: 317 DQA-ETYTK 324
               + YT 
Sbjct: 365 QMTLDIYTH 373


>gi|307138229|ref|ZP_07497585.1| putative defective integrase; Qin prophage [Escherichia coli H736]
 gi|331668249|ref|ZP_08369097.1| putative lambdoid prophage Qin defective integrase [Escherichia
           coli TA271]
 gi|284921484|emb|CBG34555.1| integrase [Escherichia coli 042]
 gi|323940346|gb|EGB36538.1| phage integrase [Escherichia coli E482]
 gi|331063443|gb|EGI35354.1| putative lambdoid prophage Qin defective integrase [Escherichia
           coli TA271]
          Length = 426

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 45/317 (14%), Positives = 97/317 (30%), Gaps = 64/317 (20%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK-ITTKHIRSGVESR-- 126
           T+K L  ++        +A  S  ++ +    I+   G+ +    I  + +    +    
Sbjct: 80  TIKELAEKFLALKE-TEVAKTSLNTYRAVIKNILSIIGEKNLASSINKEKLLEVRKELLT 138

Query: 127 --------------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
                           +  +   ++T++  +F++ V   Y+A NP   +   K       
Sbjct: 139 GYQIPKSNYIVTQPGRSAVTVNNYMTNLNAVFQFGVDNGYLADNPFKGISPLKESRTIPD 198

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK----- 225
           P ++E+  +         Q +  +   +Y+G+R  + C  G + +   N    I+     
Sbjct: 199 PLSREEFIRLIDAC-RNQQAKNLWCVSVYTGVRPGELCALGWEDIDLKNGTMMIRRNLAK 257

Query: 226 --------TQKTGTIITV--ELPDGFMKLLAMTPIGKETFF------------------- 256
                      T  +I +     D     + +T + KE                      
Sbjct: 258 DRFTVPKTQAGTNRVIHLIKPAIDALRSQMTLTRLSKEHIIDVHLREYGRTEKQKCTFVF 317

Query: 257 -------INNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELM 308
                  + N             + A   +AG+ ++ ++  R   A  S  AGA    + 
Sbjct: 318 QPEVSARVKNYGDHFTVDSIRQMWDAAIKRAGLRHRKSYQSRHTYACWSLTAGANPAFIA 377

Query: 309 ATYGWKTVDQA-ETYTK 324
              G        + Y K
Sbjct: 378 NQMGHADAQMVFQVYGK 394


>gi|241992610|gb|ACS73661.1| IntI1 [uncultured bacterium]
          Length = 315

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 43/306 (14%), Positives = 94/306 (30%), Gaps = 62/306 (20%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129
           ++ + R+   +   ++ +  ++  +    IR  G      + +  + + +      RK +
Sbjct: 16  VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75

Query: 130 PSSAIQFLTSMRVLFK--WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            S+  Q LT++   +         ++       + RP+         T +++ +   F  
Sbjct: 76  VSTHRQALTALLFFYGKVLCTDLPWLQ-----EIGRPRPSRRLPVVLTPDEVVRILGFL- 129

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
           EG   RL  + L  +G+R S+  +  V+     +    ++  K      + LP+     L
Sbjct: 130 EGEH-RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSL 188

Query: 246 AMTPIGKETFFINN---------------------------------------------D 260
                    +++ +                                              
Sbjct: 189 REQLSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVR 248

Query: 261 KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           +  M    F   FK    +AG+ K  + H +R   AT    +G     +    G   V  
Sbjct: 249 RHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVST 308

Query: 319 AETYTK 324
              YT 
Sbjct: 309 TMIYTH 314


>gi|329849596|ref|ZP_08264442.1| phage integrase family protein [Asticcacaulis biprosthecum C19]
 gi|328841507|gb|EGF91077.1| phage integrase family protein [Asticcacaulis biprosthecum C19]
          Length = 430

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 42/327 (12%), Positives = 99/327 (30%), Gaps = 46/327 (14%)

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK 117
            +   + ++K  T+  L   Y +       A   +         I    G     ++ + 
Sbjct: 92  PQDAKAQKRKEMTVAELCDFYLEEGTTTKKASTLKSDGYRINRHIKPLLGKLKISEVNSS 151

Query: 118 HIRSGVESRKH------TPS--------------------------SAIQFLTSMRVLFK 145
           HI   +            PS                          +A + + ++  +F 
Sbjct: 152 HIERFLRDVAAGKHGGRKPSKVEAKRTGLTAETRGRTDSNVRGGKGTATRTVITLSGIFT 211

Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE---GSQPRLAFEFLLYS 202
           +AV+++  + +PC  VE  K         + E++++           +        L+ +
Sbjct: 212 FAVKRKLRSDHPCRGVETYKAGKSERH-LSLEELKRLGQVMDLSHWNATAVAIIRCLILT 270

Query: 203 GLRCSDSCRAGVQ--HLQNNIFSIKTQKTG---TIITVELPDGFMKLLAMTPIGKETF-- 255
           G R  +            N+   +   KTG     + +   +     +  +   +  F  
Sbjct: 271 GCRKGEIEHLRRDAVDFSNHFLKLSDSKTGPKVVPVGLPALELLRPYVNASVKSEFVFPS 330

Query: 256 FINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKT 315
            ++ +K  +   +     K  A       + H +R   A+++ + G T   +    G   
Sbjct: 331 AVDANKPFIGTPKIWTQIKLAADL--PKTTLHDLRHTFASLAIEDGKTLPIIGKILGHSD 388

Query: 316 VDQAETYTKGAD-RIRLGIKNSRRISS 341
           +   E Y    D   R    +   +++
Sbjct: 389 IKTTERYAHLTDTSARRAANDISVLAA 415


>gi|324012822|gb|EGB82041.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 60-1]
          Length = 358

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 43/276 (15%), Positives = 88/276 (31%), Gaps = 26/276 (9%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--K 127
           T+   I  Y+       ++ N+     +  + I  K G     +ITT+HI   ++     
Sbjct: 75  TMADWIERYKTILIRRKVSRNTYKIRVNQLETIKEKLGGILLTEITTRHIAEFLDLWIEG 134

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK--RKTEGIRPWTKEDMQQFKSF 185
              + A    + +  +F+ A+ +  ++ NP      PK     E ++  T   +++    
Sbjct: 135 GKNTMAGSMRSVLSDMFREAIVEGRISQNPVTPTRAPKIVVTRERLKLKTYNCIREAADQ 194

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
                   LA +  L +G R  D        + ++   I+  KTG +I + L        
Sbjct: 195 LPAWFP--LAMDLALVTGQRREDITNMRFSEIYDDRLHIRQIKTGMMIAIPLSLSLPVAG 252

Query: 246 AMTP--------IGKETFFINNDKQKMN------ATQFSIWFKAKATKAGV-----NKSA 286
                       + +  + I+   +K +          +  F A     G+       + 
Sbjct: 253 LRLGAVVEQCRMVSRGDYLISAGIRKNSPDGSIHPDGLTKKFVAARKLTGIQFSENPPTF 312

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           H +R   A                 G  +    + Y
Sbjct: 313 HEIR-SLAGRLYKETCGEEFAQRLLGHTSEKTTKMY 347


>gi|294776304|ref|ZP_06741787.1| integron integrase [Bacteroides vulgatus PC510]
 gi|294449844|gb|EFG18361.1| integron integrase [Bacteroides vulgatus PC510]
          Length = 366

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 37/297 (12%), Positives = 90/297 (30%), Gaps = 22/297 (7%)

Query: 41  STFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD 100
             F   Y         +    +   K+  TL      Y +       + ++  ++ +YF 
Sbjct: 60  PDFYDRYSPHAYIDYSRVYVRHPKPKREYTLP---EGYLELLEQKRYSPSTIKTYRAYFS 116

Query: 101 QIIRKSGDFDYRKITTKHIRSGV----ESRKHTPSSAIQFLTSMRVLFKWAV--RQEYVA 154
             +      +  ++    I   +      +K + S     + +++  ++     +++Y  
Sbjct: 117 DFMEYHKGRNIDRLKVADINKYILYLVNEKKISVSQQNMRINAIKFYYEQVKGGKRQYYG 176

Query: 155 INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGV 214
                 + R K         ++ ++ +  S  S     R     +  +GLR S+      
Sbjct: 177 -----GITRAKEYKSLPEVLSRNEVCRILSCLSNRKH-RCMISLIYSAGLRRSELLNLTP 230

Query: 215 QHLQNNIFSIKTQKTGTI-----ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF 269
           + + +    +     G       ++ +L     +        K  F      +  +A+  
Sbjct: 231 KDIISERMLVCIMGKGRKCRYSLLSEKLLKELREYFKEYRPQKWLFEGETPGEPYSASAL 290

Query: 270 SIWFKAKATKAGVNKSAHG--VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
               K  A++AG+    H   +R   AT   + G     +    G   +     Y  
Sbjct: 291 VKVLKEAASRAGIKHRVHVHMLRHSFATHLLEQGTDLRTIQELLGHNDIKTTSIYLH 347


>gi|29349957|ref|NP_813460.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
 gi|29341868|gb|AAO79654.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
          Length = 372

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 40/232 (17%), Positives = 83/232 (35%), Gaps = 12/232 (5%)

Query: 111 YRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170
           +R+      +     R  + +SA+ + ++ R   K   R + +  N    +++ + +   
Sbjct: 138 FREYLLNAKQLRRPERPISRNSAVGYWSTFRGFLKILYRNKLIHSNVNDFLDKIEPEDVV 197

Query: 171 IRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-----QNNIFSIK 225
               + +++ +      +    + A  F   + LR SD      + +             
Sbjct: 198 KDYLSVDELYRLAETPCKIPVLKTASLFSCLTSLRISDILTLRWEEIVDFAAGGKCVHTV 257

Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284
           TQKT T   + + D  ++L+  +P      F    K+           K     AG+ K 
Sbjct: 258 TQKTKTEDIIPISDEALQLIGYSPEKTGLVF-KGLKRCWTQYP----MKEWIRAAGITKN 312

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335
            + H  R+  AT+ A AG     + +    K++   + Y K  D  +    N
Sbjct: 313 ITFHSYRRTFATLQAAAGTDIRTIQSIMAHKSITTTQRYMKVVDSNKRKASN 364


>gi|56476174|ref|YP_157763.1| hypothetical protein ebA1360 [Aromatoleum aromaticum EbN1]
 gi|56312217|emb|CAI06862.1| similar to phage-related integrase [Aromatoleum aromaticum EbN1]
          Length = 411

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 47/292 (16%), Positives = 92/292 (31%), Gaps = 20/292 (6%)

Query: 49  SALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD 108
           + +           + + +P TL    +EY        LA       + + D + +  G+
Sbjct: 85  AEIESGANPAATKRAFKAEP-TLTEFFAEYGTRHGEKKLAW--PADVQRFRDYLQKPMGN 141

Query: 109 FDYRKITTKHIRSGV---ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165
               +I    I   +   E    + ++          +F  AV    +  NP   V+   
Sbjct: 142 KRLSEIDRAMIAKALSDAEKAGKSVATVRNIRALASGVFGKAVEWGRLDFNPAQGVKVAG 201

Query: 166 RKTEGIRPWTKEDMQQ-FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIF 222
           +K    R    +++ + F +   E    R      L +G R ++ C        L   ++
Sbjct: 202 KKVSRDRFLQADELPRFFAAVAEEDDTMRDFILLALLTGARRANVCAMHWHELDLAAGVW 261

Query: 223 SIKTQKTGTIITVELPDGFMKLLAMT--PIGKETFFINNDKQKMNATQFSIWFKAKATKA 280
            I   K G   TV L    + +L       G    F    +            +  A +A
Sbjct: 262 RIPRTKNGEPQTVTLCPEAVMILEARKDATGGGFVFPGTGRTGHVVEPKKAVERVMA-RA 320

Query: 281 GVNK--------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           G+          + H +R+   +  A  GA+   +  +   K+      Y +
Sbjct: 321 GIPYGRDVPNGATLHDLRRTLGSWQARTGASLAIIGKSLNHKSQQATAIYAR 372


>gi|323185883|gb|EFZ71240.1| phage integrase family protein [Escherichia coli 1357]
          Length = 426

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 45/317 (14%), Positives = 97/317 (30%), Gaps = 64/317 (20%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK-ITTKHIRSGVESR-- 126
           T+K L  ++        +A  S  ++ +    I+   G+ +    I  + +    +    
Sbjct: 80  TIKELAEKFLALKE-TEVAKTSLNTYRAVIKNILSIIGEKNLASSINKEKLLEVRKELLT 138

Query: 127 --------------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
                           +  +   ++T++  +F++ V   Y+A NP   +   K       
Sbjct: 139 GYQIPKSNYIVTQPGRSAVTVNNYMTNLNAVFQFGVDNGYLADNPFKGISPLKESRTIPD 198

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK----- 225
           P ++E+  +         Q +  +   +Y+G+R  + C  G + +   N    I+     
Sbjct: 199 PLSREEFIRLIDAC-RNQQAKNLWCVSVYTGVRPGELCALGWEDVDLKNGTMMIRRNLAK 257

Query: 226 --------TQKTGTIITV--ELPDGFMKLLAMTPIGKETFF------------------- 256
                      T  +I +     D     + +T + KE                      
Sbjct: 258 DRFTVPKTQAGTNRVIHLIKPAIDALRSQMTLTRLSKEHIIDVHLREYGRTEKQKCTFVF 317

Query: 257 -------INNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELM 308
                  + N             + A   +AG+ ++ ++  R   A  S  AGA    + 
Sbjct: 318 QPEVSARVKNYGDHFTVDSIRQMWDAAIKRAGLRHRKSYQSRHTYACWSLTAGANPAFIA 377

Query: 309 ATYGWKTVDQA-ETYTK 324
              G        + Y K
Sbjct: 378 NQMGHADAQMVFQVYGK 394


>gi|255100237|ref|ZP_05329214.1| putative tyrosine recombinase [Clostridium difficile QCD-63q42]
          Length = 304

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 44/265 (16%), Positives = 101/265 (38%), Gaps = 21/265 (7%)

Query: 85  GSLAVNSRISF----ESYFDQIIRKSGDF-DYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
             L+ N+  S+    + Y + I +KS    D  +         +E    + ++  + ++S
Sbjct: 15  KKLSENTVASYFMDIKKYMEYINQKSIKLVDIVENDIISYLIKLEKDNVSIATIARMISS 74

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLA 195
           ++    +       A NP   +++PK K E I   T+E++++  +F    +    + +  
Sbjct: 75  IKSFHDYLFLNHICANNPAKDIKKPKIKKENINILTEEEIERLLNFPKLTTPKLIRDKAI 134

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ---KTGTIIT------VELPDGFMKLLA 246
           FE L  +G++ S+     ++ +  +I  I      K   +I       + L     +   
Sbjct: 135 FEVLYGTGIKVSELVEMNIEDIDLDIDYIYCNSCCKNQRVIPLCDITKLYLEKYLKEARP 194

Query: 247 MTPIGKE-TFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHG--VRKFSATISADAGAT 303
              +  E + F+++  Q+          K  +  A ++K+ +   +R   A    + GA 
Sbjct: 195 KMAVEGEKSLFVSSLGQRFTRQGLWKVIKKYSNLANIDKNINPTMLRHSFAIHLLNEGAN 254

Query: 304 AHELMATYGWKTVDQAETYTKGADR 328
              +    G   +   + Y    D+
Sbjct: 255 IAVVSKILGNVNLSSLQVYLNHIDK 279


>gi|320335754|ref|YP_004172465.1| integrase family protein [Deinococcus maricopensis DSM 21211]
 gi|319757043|gb|ADV68800.1| integrase family protein [Deinococcus maricopensis DSM 21211]
          Length = 291

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 36/257 (14%), Positives = 83/257 (32%), Gaps = 13/257 (5%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFL 137
           +     +  L+  +   +   +++  + SG+       T           HTPSS     
Sbjct: 10  FIGDREYQGLSPETLRYYRQCWERFKQYSGEEPTVDRMTLQQYLISLQATHTPSSIATRW 69

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE 197
             +++  KW   +EY   +P   ++ P+   +  +P ++ ++ +  +      + +    
Sbjct: 70  RGLKIFLKWCYVEEYSEFDPSR-LKNPRAPFKKKQPLSEIEVLKLLNAC-RNFRDKAIVA 127

Query: 198 FLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK--- 252
            L  +G+R  + C   V  +   N    ++  K G    V      ++ L      +   
Sbjct: 128 LLFDTGIRSKELCNLTVGDVDLVNRCVYVRNGKGGRDRIVPFSPSALRDLRKWAQQRNVE 187

Query: 253 ----ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHE 306
                          +N         +   +AG+ +    H +R   A     +      
Sbjct: 188 SPWFFHVVKGEVGGALNRRWLHGLLMSAGKRAGLGEIVGPHKLRHSYARSYIASNGNPMA 247

Query: 307 LMATYGWKTVDQAETYT 323
           L  T G  ++   + Y 
Sbjct: 248 LQETLGHSSIIVTQRYV 264


>gi|262383667|ref|ZP_06076803.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_33B]
 gi|262294565|gb|EEY82497.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_33B]
          Length = 407

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 49/289 (16%), Positives = 101/289 (34%), Gaps = 39/289 (13%)

Query: 86  SLAVNSRISFESYFDQIIR------KSGDFDYRKITTKHIRSG----VESRKHTPSSAIQ 135
           +   ++   +E   + +IR         D  + K+    I +         K   ++ + 
Sbjct: 127 NREKSTAEQYEISLNHLIRFLRKKYNVSDVPFTKLDLSFIEAYDFYLRVELKLKSNTILG 186

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLS--VERPKRKTEGIRPWTKEDMQQFKSF---WSEGS 190
            +  +R + K A+ +  +  +P      ERPK + +     T+E++ +            
Sbjct: 187 IVRHVRKMIKLAIAEGIIYRDPFDGYAPERPKAEQK---YLTREELDRLMKTRLDHPSRY 243

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHL---QNNIFSIKT--QKTGTIITVELP----DGF 241
             R  F F +++GL   D C    +H+    + +  I+T  QKTGT   + L        
Sbjct: 244 LTRDMFLFSVFTGLAYRDVCNLTPKHIVRADDGVLWIRTTRQKTGTPCDIPLLGLPKQII 303

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATIS-A 298
            K   +   GK    ++  +        +   K  AT   +++    H  R   AT    
Sbjct: 304 EKYKGVAKDGKLLPMLSCGR-------LNKNLKVIATICKIDRKLIYHAGRHTYATEICL 356

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
             G     +    G + +   + Y K  +      ++ +R  S ++   
Sbjct: 357 SQGVPIESVSRMLGHRDLRSTQIYAKITEHK--IAEDMQRAESRIEDKF 403


>gi|237727000|ref|ZP_04557481.1| integrase [Bacteroides sp. D4]
 gi|229433856|gb|EEO43933.1| integrase [Bacteroides dorei 5_1_36/D4]
          Length = 406

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 48/284 (16%), Positives = 96/284 (33%), Gaps = 39/284 (13%)

Query: 78  YRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVESRKHTPSSA 133
           + KSA        +++ +  +    +       D++ +T    +     +  + +  ++ 
Sbjct: 111 FAKSAIDNSDKKQSTKDNLHTTLAVLHDFRSGLDFKDLTYTFLRDFEQYLREKGNAVNTI 170

Query: 134 IQFLTSMRVLFKWAVRQEYVAIN--PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
            + +  +R L   A+ Q Y+  +  P    +  K++         +++++ ++   E   
Sbjct: 171 AKHMRQLRTLVNEAINQGYMHADAYPFRKYK-IKQEKGRHEFLIPDELKKLETVEVEEES 229

Query: 192 PR---LAFEFLLYSGLRCSDSCRAGVQHLQN----NIFSIKTQKTGTIITVELP-----D 239
            R    AF F  Y+GLR SD C+   ++            K+ KTG  I + L       
Sbjct: 230 MRHVLDAFLFCCYTGLRYSDFCQLTPENFIRINGKRWLYFKSVKTGVEIRLPLHLLFESR 289

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATIS 297
               L     IG               ++ +   +  A   G+ K    H  R   AT+ 
Sbjct: 290 ALGSLDRYPDIGSLAALP-------CNSEVNRQLRKLAGLCGIKKRITYHVSRHTCATLL 342

Query: 298 ADAGATAHELMATYGWKTVDQAETYT-----------KGADRIR 330
              G     +    G  +V   + Y+           K A R R
Sbjct: 343 IHQGVAITTVQKLLGHTSVKTTQIYSEILSSTIVRDLKNAQRKR 386


>gi|212692014|ref|ZP_03300142.1| hypothetical protein BACDOR_01509 [Bacteroides dorei DSM 17855]
 gi|212665406|gb|EEB25978.1| hypothetical protein BACDOR_01509 [Bacteroides dorei DSM 17855]
          Length = 387

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 43/285 (15%), Positives = 89/285 (31%), Gaps = 33/285 (11%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRK--------SGDFDYRKITTK---------- 117
            +Y+  A +       R     +  +             G   + +I             
Sbjct: 103 DKYKLKADFLEY---YRKQLRKHDQKWEFVYLHFSNFVHGKCTFEEIDIDLCNKFREYLL 159

Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
             +    + + T +SA  + ++ R   K   R   +  N    +E+ + +       + E
Sbjct: 160 SAKKLRRNGRITRNSASGYWSTFRGFLKILYRNGMIKTNVNDFLEKIETEDTMKEALSVE 219

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-----QNNIFSIKTQKTGTI 232
           ++ Q      +    ++A  F   + LR SD      + +           I TQK  T 
Sbjct: 220 ELYQLAETPCKKPIVKIASLFSCMTSLRISDILALCWEDIVDYSAGGKCVHIITQKNKTE 279

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290
             + + +  + L+  +   K   F     + +  +      K     AG+ K  + H  R
Sbjct: 280 DIIPISEEALGLIGYSSEKKGLVF-----KGLMRSWTQAPMKEWIRSAGITKNITFHSYR 334

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335
           +   T+   AG     + +    K++     Y K  D  +    N
Sbjct: 335 RTFTTLQGAAGTDVRTIQSIMAHKSITTTMRYMKVVDSNKREASN 379


>gi|186896553|ref|YP_001873665.1| integrase family protein [Yersinia pseudotuberculosis PB1/+]
 gi|186699579|gb|ACC90208.1| integrase family protein [Yersinia pseudotuberculosis PB1/+]
          Length = 327

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 48/307 (15%), Positives = 96/307 (31%), Gaps = 24/307 (7%)

Query: 26  RKGHGRRIRLPYPHESTFIP-AYMSALTGSTPKREYINSP--RKKPTTLKWLISEYRKSA 82
           R       R+           A+   +  +  ++E+++ P  ++  + L  L   Y    
Sbjct: 16  RPAGRNGKRIRRTFSKKHEAVAFEKYVVVNYHEKEWLSKPTDKRSLSELSTLWWSY--HG 73

Query: 83  HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRV 142
                    ++       +I+     F   K      R+   +     SS  + L  +  
Sbjct: 74  QNMDYGQKYKVQLAKVI-RIMSDLCAFQIDKNVIARYRAIRLAGGVKASSVNRDLAVLSG 132

Query: 143 LFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201
           +F   +    Y + +P   + + K K       ++ ++++  +    G   R+A    L 
Sbjct: 133 MFTALINAGVYHSEHPLAGISKLKPKQTARAFLSQSEIKELLNCLD-GDNRRVAI-LCLS 190

Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG----KETFFI 257
           +G R  ++ +   +H+ +N  +    K G   TV +       L     G       + I
Sbjct: 191 TGARWGEAIKLRTEHIIDNRITFVATKNGKQRTVPISRDVFNDLTAMKSGLLFNDAAYLI 250

Query: 258 NNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVD 317
              K K   T                ++ H +R   AT     G     L    G  T+ 
Sbjct: 251 FRQKLKSVKTDLPQ-----------GQATHVLRHTFATHFMINGGNIITLQRILGHSTIQ 299

Query: 318 QAETYTK 324
           Q   Y  
Sbjct: 300 QTMLYAH 306


>gi|150008058|ref|YP_001302801.1| integrase [Parabacteroides distasonis ATCC 8503]
 gi|149936482|gb|ABR43179.1| integrase [Parabacteroides distasonis ATCC 8503]
          Length = 311

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 48/284 (16%), Positives = 104/284 (36%), Gaps = 36/284 (12%)

Query: 90  NSRISFESYFDQIIRKSG--DFDYRKITTKH---IRSGVESRKHTPSSAIQFLTSMRVLF 144
           ++  S++   +      G     Y  I        +S +  +  + ++   ++  +R ++
Sbjct: 25  STAKSYQDALNSFKCFCGMEAIPYAYINRNRLLCYQSWLLDKGRSLNTVSTYMRRIRHIY 84

Query: 145 KWAVRQEYVAINP------CLSVERPKRKTEGIRPWTKEDMQQ-FKSFWSEGSQPRLAFE 197
             AV        P         VE  ++K        +E +++ F +   + S  R+   
Sbjct: 85  NLAVEANEAPFVPNLFKDVFTGVESKRKK-----ALPREMLERMFNAPLGDPSLRRVQLT 139

Query: 198 FLL---YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL----AMTPI 250
             L   +SG+   D      +++++ I     QK+G++I +E+P G ++LL    A T  
Sbjct: 140 VRLMFAFSGIAFVDLTHLKWENIRDGILQYHRQKSGSLIQLEIPSGALRLLDELSACTAK 199

Query: 251 GKETFFINNDKQK----------MNATQFSIWFKAKATKAG--VNKSAHGVRKFSATISA 298
                F     ++             ++F+   K  A   G  +  +++ +R   A+   
Sbjct: 200 ESFYLFPFLSGRRTGEAAYKEYNRTLSRFNRDLKLLARSTGVTLPVTSYTIRHSFASFLK 259

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
           +   +   +    G K++   + Y K     RL   N     SV
Sbjct: 260 EQDVSIEVISELLGHKSIKTTQIYLKSFSLERLSTVNRNCFESV 303


>gi|218707888|ref|YP_002415407.1| Integrase/recombinase (E2 protein) [Escherichia coli UMN026]
 gi|293404547|ref|ZP_06648540.1| integron integrase IntI1 [Escherichia coli FVEC1412]
 gi|218434985|emb|CAR15926.1| Integrase/recombinase (E2 protein) [Escherichia coli UMN026]
 gi|291428259|gb|EFF01285.1| integron integrase IntI1 [Escherichia coli FVEC1412]
          Length = 337

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 42/306 (13%), Positives = 93/306 (30%), Gaps = 62/306 (20%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129
           ++ + R+   +   ++ +  ++  +    IR  G      + +  + + +      RK +
Sbjct: 16  VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75

Query: 130 PSSAIQFLTSMRVLFK--WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            S+  Q L ++   +         ++       + RP+         T +++ +   F  
Sbjct: 76  VSTHRQALAALLFFYGKVLCTDLPWLQ-----EIGRPRPSRRLPVVLTPDEVVRILGFL- 129

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
           EG   RL  + L  +G+R S+  +  V+     +    ++  K      + LP+     L
Sbjct: 130 EGEH-RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSL 188

Query: 246 AMTPIGKETFFINN---------------------------------------------D 260
                    +++ +                                              
Sbjct: 189 REQLSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWLWFWVFAQHTHSTDPRSGVVR 248

Query: 261 KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           +  M    F   FK    +AG+ K  + H +R   AT    +G     +    G   V  
Sbjct: 249 RHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVST 308

Query: 319 AETYTK 324
              YT 
Sbjct: 309 TMIYTH 314


>gi|26990625|ref|NP_746050.1| phage integrase, putative [Pseudomonas putida KT2440]
 gi|24985610|gb|AAN69514.1|AE016585_6 phage integrase, putative [Pseudomonas putida KT2440]
          Length = 349

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 51/294 (17%), Positives = 93/294 (31%), Gaps = 30/294 (10%)

Query: 2   TPSLRLPPFVTKER--TRHGKII--YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPK 57
           T +  LPP + + +    +GK+    Y+R   G+ I L        +    + L   +  
Sbjct: 6   TENRDLPPGMYRRKRQKANGKVWEALYYRDRSGKDIFLGNDLVKAKLK--WAELEAKSVP 63

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK 117
           +E         TT+K +  EY         AV ++        Q+           IT  
Sbjct: 64  KEL--------TTMKGIFDEYLL-KIVPGKAVRTQKDNIYELKQLRNVFDSAPIDAITPA 114

Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI-NPCLSVERPKRKTEGIRPWTK 176
            I    +SR    + A + +  +  +F  A         NPCL V + K K        +
Sbjct: 115 MIAQYRDSRSAK-TRANREIALLSHVFNTAREWGLTTRDNPCLGVRKNKEKPRDFYA-NE 172

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
              Q          +   A +    +G R SD        ++     +   KTG  + + 
Sbjct: 173 TVWQAVYEEAPPELKD--AMDLAYLTGQRPSDVLSMRKDDMEGIYLLVSQGKTGKRLRIV 230

Query: 237 L--------PDGFMKLLAMTPIGKET--FFINNDKQKMNATQFSIWFKAKATKA 280
           L            ++ +     G  +  F +N   ++M+       +      A
Sbjct: 231 LEVDGVKNSLGLLLERIMHRTSGHLSPFFIVNEHGKRMSWPMLRNRWADAREDA 284


>gi|145220218|ref|YP_001130927.1| phage integrase family protein [Prosthecochloris vibrioformis DSM
           265]
 gi|145206382|gb|ABP37425.1| phage integrase family protein [Chlorobium phaeovibrioides DSM 265]
          Length = 325

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 43/286 (15%), Positives = 88/286 (30%), Gaps = 41/286 (14%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESRKHTPSSAIQFLTSM 140
           G+L+ ++ +++ +   Q        D          +   + +  R   P S  + L S+
Sbjct: 31  GNLSEHTVLAYRTDIRQFFSILSPPDDLQLLTAADIRFFMAELIRRGLQPRSIARKLASV 90

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED-MQQFKSFWSEG---------- 189
           R  F +   +  +  +   ++  P+ +       +  +  + F++               
Sbjct: 91  RSFFHYLQERGLLGHSVLQTLSMPRYQRSVPAFLSVSETRELFETVVPAARYRKGEAGLL 150

Query: 190 -----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
                 +   A E L   GLR S+        L+     +K    G    + +P G   +
Sbjct: 151 DSFVLHRDAAALELLYGCGLRISELTALQDNDLELAGGFVKLTGKGRKQRI-VPLGLAAV 209

Query: 245 LAMTP-----------------IGKETFFINNDKQKMNATQFSIWFKAK--ATKAGVNKS 285
            A+                   +G    F+ N  +K+         +           K+
Sbjct: 210 SALKKYFEVRRNFFRMKRGTELVGNGYVFLTNKGKKIYPMLVQRMTRKYLLPVTEQKKKN 269

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            H +R   AT   ++GA    +    G   +   E YT      RL
Sbjct: 270 PHILRHSFATHLLNSGADLQSVSEMLGHSNLSTTEIYTH-VSFERL 314


>gi|327399861|ref|YP_004346892.1| site-specific recombinase, phage integrase family protein
           [Lactobacillus amylovorus GRL 1112]
 gi|327399877|ref|YP_004346908.1| site-specific recombinase, phage integrase family protein
           [Lactobacillus amylovorus GRL 1112]
 gi|327182531|gb|AEA32966.1| site-specific recombinase, phage integrase family protein
           [Lactobacillus amylovorus GRL 1112]
 gi|327182547|gb|AEA32982.1| site-specific recombinase, phage integrase family protein
           [Lactobacillus amylovorus GRL 1112]
          Length = 284

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 45/269 (16%), Positives = 92/269 (34%), Gaps = 22/269 (8%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVESRKH--- 128
           LI E+ +       A  + + +E    +     +       ++    +   +E +     
Sbjct: 9   LIDEFIEDLRLQGRAEGTLLEYEMRLKEFAEFFQLKALALDQVKKSDLTEFMEQKLSNCL 68

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK-RKTEGIRPWTKEDMQQFKSFWS 187
             S+    L++ RV   WAV + Y++       + PK    + IR  + E++  FK +  
Sbjct: 69  KVSTIRGKLSTFRVFCLWAVNKNYLSEVIISPQDYPKNTNVKRIRRLSDENLTIFKHYID 128

Query: 188 -EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI----FSIKTQKTGTIITVELPDGFM 242
                 R AF  L+ SG R +++     + +          I+  K G+   + + D   
Sbjct: 129 TLQPNARAAFYLLIGSGCRVAEAANLRAEDVTLRGNSVYIDIRNAKWGSDRNIPIVDADA 188

Query: 243 -----KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATIS 297
                K      +     F      +++      +    A   G+N   H +R   A + 
Sbjct: 189 AKIVWKYRTEVEVDNRPLF------RLSKRTLQNYATNFAKSTGINFYCHLLRHTFAGLL 242

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGA 326
            + G     +    G K++     Y + A
Sbjct: 243 TEKGVPLTTVQYLLGHKSLGMTAHYAQSA 271


>gi|294491667|gb|ADE90423.1| integrase/recombinase, phage integrase family [Escherichia coli
           IHE3034]
 gi|323161587|gb|EFZ47473.1| integrase [Escherichia coli E128010]
          Length = 334

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 55/311 (17%), Positives = 108/311 (34%), Gaps = 14/311 (4%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIP-AYMSALTGSTPKREYINSPRKKPTTLKWLISE 77
           G+ +   R    +  R+    +   +  A    +  +  KREYI   R +  TL  L+  
Sbjct: 9   GRYLLDIRPNGRKGKRVRKVFDKKSVAVATERYIMANAEKREYIQGYRDR-RTLNDLLEL 67

Query: 78  Y-RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF 136
           +          A   R    +  +++       D  K+     RS   +    PSSA ++
Sbjct: 68  WWMYHGQHRRKAEEDRKQLRNIINELGADMQAVDLDKLKIIAWRSQKIAEGLKPSSANRY 127

Query: 137 LTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195
           +  +  +F    +   + A +P   +         +   +++++        EG   R+A
Sbjct: 128 MNRLSGMFTVLKKIGLWDAEHPVRGISILYVSPREMAFLSQKEVALLLDTL-EGDYWRVA 186

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF 255
               L +G R S++C+   + + +N  +    K G   TV +     + +     G  + 
Sbjct: 187 L-LCLSTGARWSEACKLRGEQIVHNRVTFLETKNGRKRTVPISQAVCEAIKTRETG--SL 243

Query: 256 FINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKT 315
           F    ++      F +  K         ++AH +R   A+     G     L    G  T
Sbjct: 244 FEVKYRE------FCLALKRVKPDLPKGQAAHVLRHTFASHFVMNGGNIIALQKILGHAT 297

Query: 316 VDQAETYTKGA 326
           + Q   Y   A
Sbjct: 298 IQQTMAYAHFA 308


>gi|301026700|ref|ZP_07190109.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 69-1]
 gi|300395347|gb|EFJ78885.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 69-1]
          Length = 431

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 45/317 (14%), Positives = 97/317 (30%), Gaps = 64/317 (20%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK-ITTKHIRSGVESR-- 126
           T+K L  ++        +A  S  ++ +    I+   G+ +    I  + +    +    
Sbjct: 85  TIKELAEKFLALKE-TEVAKTSLNTYRAVIKNILSIIGEKNLASSINKEKLLEVRKELLT 143

Query: 127 --------------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
                           +  +   ++T++  +F++ V   Y+A NP   +   K       
Sbjct: 144 GYQIPKSNYIVTQPGRSAVTVNNYMTNLNAVFQFGVDNGYLADNPFKGISPLKESRTIPD 203

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK----- 225
           P ++E+  +         Q +  +   +Y+G+R  + C  G + +   N    I+     
Sbjct: 204 PLSREEFIRLIDAC-RNQQAKNLWCVSVYTGVRPGELCALGWEDIDLKNGTMMIRRNLAK 262

Query: 226 --------TQKTGTIITV--ELPDGFMKLLAMTPIGKETFF------------------- 256
                      T  +I +     D     + +T + KE                      
Sbjct: 263 DRFTVPKTQAGTNRVIHLIKPAIDALRSQMTLTRLSKEHIIDVHLREYGRTEKQKCTFVF 322

Query: 257 -------INNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELM 308
                  + N             + A   +AG+ ++ ++  R   A  S  AGA    + 
Sbjct: 323 QPEVSARVKNYGDHFTVDSIRQMWDAAIKRAGLRHRKSYQSRHTYACWSLTAGANPAFIA 382

Query: 309 ATYGWKTVDQA-ETYTK 324
              G        + Y K
Sbjct: 383 NQMGHADAQMVFQVYGK 399


>gi|254526258|ref|ZP_05138310.1| site-specific recombinase, phage integrase family [Prochlorococcus
           marinus str. MIT 9202]
 gi|221537682|gb|EEE40135.1| site-specific recombinase, phage integrase family [Prochlorococcus
           marinus str. MIT 9202]
          Length = 321

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 52/310 (16%), Positives = 95/310 (30%), Gaps = 25/310 (8%)

Query: 31  RRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLA-V 89
           RR     P   TF+   ++       +       +  P TL   I+EY         +  
Sbjct: 16  RRKNYVGPRSKTFLSRDLAQSWADAVEERSKKVFKDIPITLGEAINEYINGPLLMHRSAE 75

Query: 90  NSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWA 147
           N +       +      GD   + +  +H     + R  K  P++ ++ L  +RVL  W 
Sbjct: 76  NEKYPLRVTAESW---LGDIPLKDLQIRHFAVWRDERLLKVKPNTVMRELRILRVLIDWV 132

Query: 148 VRQE--YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS-QPRLAFE-FLLYSG 203
             +    +  NP   +            +T +D Q+     S+ S +  L      L +G
Sbjct: 133 RDERGAEIKDNPARQLRVRGTGDARAPFFTDQDEQRLLFELSQMSNKNHLRLTKLALTTG 192

Query: 204 LRCSDSCRAGVQHLQNN-IFSIKTQKT-------GTIITVELPDGFMKLLAMTPIGKETF 255
            R S+      +++          +K             V L     K+L          
Sbjct: 193 FRRSELLSLTWRNIDLKKRIIYIHRKNCAATDNSSAPRLVPLQGKAKKILEELSERHGKI 252

Query: 256 FINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWK 314
                    +       F     KAG+     H +R  + +    +G  A E+ A  G +
Sbjct: 253 IDLTKGAARHG------FDKARQKAGLKTLRFHDLRHIAISRMWSSGMNALEISACSGHR 306

Query: 315 TVDQAETYTK 324
            +     Y+ 
Sbjct: 307 DIKMLMRYSH 316


>gi|115525989|ref|YP_782900.1| phage integrase family protein [Rhodopseudomonas palustris BisA53]
 gi|115519936|gb|ABJ07920.1| phage integrase family protein [Rhodopseudomonas palustris BisA53]
          Length = 409

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 58/338 (17%), Positives = 105/338 (31%), Gaps = 41/338 (12%)

Query: 15  RTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMS---------ALTGSTPKREYINS 63
           R + G  +Y   +R    +R     PH S + P                G  P  +   +
Sbjct: 32  RRQRGAPVYVVKYRAFGRQRFFTIGPHGSPWTPERARKEAKRLLGLVADGKDPADQRTQA 91

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
             +   TL+ +  +Y K A        +    E Y     +         I  +H+ + V
Sbjct: 92  ALEAADTLRKITDQYLKHAK-QKQRPKTYSEVERYLITSWKPLHPVSVFLIRRRHVATRV 150

Query: 124 ESRK--HTPSSAIQFLTSMRVLFKWAVRQEY-VAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                 H   +A +   ++  +F WA+R+   +  NP +   RP       R  T  ++ 
Sbjct: 151 AEMASDHGAVTAARARAALSAMFNWAIREGLDIPSNPVIGTNRPTEPKSRERVLTDIELG 210

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI----KTQKTGTIITVE 236
           Q  +   +    R   + L+ +  R  +        L ++           K      V 
Sbjct: 211 QIWAALGDDDYGR-IVKLLILTAQRREEVGGMRWTELDHDTNVWTLPSTRTKNHREHRVP 269

Query: 237 LPDGFMKLLAMTPIGKETFF-INNDKQKMNATQFSIWFKAKATKAG-------------- 281
           L +  + L+      +E  F     ++      FS W K+K                   
Sbjct: 270 LTEAAIALIPTPQTSREHVFGAGPRRKGDCHRGFSGWSKSKCVLDAHLFAARRETVEGST 329

Query: 282 -----VNKSAHGVRKFSATISADA-GATAHELMATYGW 313
                 +   H +R+ +AT  AD  G   H + A    
Sbjct: 330 ETKPIPDWRLHDLRRTAATTMADRLGVLPHIIEAVLNH 367


>gi|323484510|ref|ZP_08089875.1| phage integrase family Site-specific recombinase [Clostridium
           symbiosum WAL-14163]
 gi|323402088|gb|EGA94421.1| phage integrase family Site-specific recombinase [Clostridium
           symbiosum WAL-14163]
          Length = 280

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 38/281 (13%), Positives = 94/281 (33%), Gaps = 29/281 (10%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           L  EY +       + N+   +     + +      +  K      +  +    +  +S 
Sbjct: 13  LFGEYLEQDE---KSKNTIEKYRRDLRKFVEYIDGEEVTKELVIGFKEYLVEH-YAVNSV 68

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
              + S+    ++A    +        V++ K++ +   P  ++++ + + F    +  R
Sbjct: 69  NSIIASLNRFMQFA---GWQEF----RVKQLKKQRQVYCP-EEKELTKQEYFELIRTAKR 120

Query: 194 -------LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE--LPDGFMKL 244
                  L  + +  +G+R S+     VQ ++N +  +  +     + +   L    M  
Sbjct: 121 EGKEKIGLIIQTIGSTGIRISELPSITVQAVKNGVAQVDCKGKNRQVLLPRKLLVKLMHY 180

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAG 301
           +    I     FI      ++ +      K     AGVN+     H +R   A       
Sbjct: 181 IRKEHIQCGPIFITKQGNPLDRSNIWKEMKKICRLAGVNEKKVFPHNLRHLFAYSFYQME 240

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
               +L    G   ++    Y   +     G+++ ++I  +
Sbjct: 241 KDIAKLADLLGHSNINTTRIYIVSS-----GVEHRKQIEKM 276


>gi|323169866|gb|EFZ55522.1| phage integrase family protein [Escherichia coli LT-68]
          Length = 431

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 45/317 (14%), Positives = 97/317 (30%), Gaps = 64/317 (20%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK-ITTKHIRSGVESR-- 126
           T+K L  ++        +A  S  ++ +    I+   G+ +    I  + +    +    
Sbjct: 85  TIKELAEKFLALKE-TEVAKTSLNTYRAVIKNILSIIGEKNLASSINKEKLLEVRKELLT 143

Query: 127 --------------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
                           +  +   ++T++  +F++ V   Y+A NP   +   K       
Sbjct: 144 GYQIPKSNYIVTQPGRSAVTVNNYMTNLNAVFQFGVDNGYLADNPFKGISPLKESRTIPD 203

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK----- 225
           P ++E+  +         Q +  +   +Y+G+R  + C  G + +   N    I+     
Sbjct: 204 PLSREEFIRLIDAC-RNQQAKNLWCVSVYTGVRPGELCALGWEDIDLKNGTMMIRRNLAK 262

Query: 226 --------TQKTGTIITV--ELPDGFMKLLAMTPIGKETFF------------------- 256
                      T  +I +     D     + +T + KE                      
Sbjct: 263 DRFTVPKTQAGTNRVIHLIKPAIDALRSQMTLTRLSKEHIIDVHLREYGRTEKQKCTFVF 322

Query: 257 -------INNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELM 308
                  + N             + A   +AG+ ++ ++  R   A  S  AGA    + 
Sbjct: 323 QPEVSARVKNYGDHFTVDSIRQMWDAAIKRAGLRHRKSYQSRHTYACWSLTAGANPAFIA 382

Query: 309 ATYGWKTVDQA-ETYTK 324
              G        + Y K
Sbjct: 383 NQMGHADAQMVFQVYGK 399


>gi|218295372|ref|ZP_03496185.1| integrase family protein [Thermus aquaticus Y51MC23]
 gi|218244004|gb|EED10530.1| integrase family protein [Thermus aquaticus Y51MC23]
          Length = 313

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 45/270 (16%), Positives = 86/270 (31%), Gaps = 19/270 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLF 144
              +      +        R            + +R+ +   +  P     FL ++R  +
Sbjct: 42  RGYSPRGVRRYLQDLALWFRFLEARAL-PPGPEAVRAILLEERWAPRRVQGFLAALRSYY 100

Query: 145 KW-AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEF---LL 200
           ++ A  +     +P   + RPK           E++ +F    ++  + RL       L 
Sbjct: 101 RYLAQVRGEAVADPTEGIGRPKAGRRLPLHPAPEELLRFLEALAQEKEARLLTALARFLY 160

Query: 201 YSGLRCSDSCRAGVQHLQNNIFS----IKTQKTGTIITVELPDGFMKLLAMT--PIGKET 254
            +GLR S++     +++              K      V L       L     P G   
Sbjct: 161 GTGLRISEALSLKGKNIVQEGGRPVAVRVVGKGNKERLVPLSRTAQSALLELGPPQGNVN 220

Query: 255 FFINN----DKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHEL 307
            F         +  +A      F+  A +AG++    + H +R   AT   + G     +
Sbjct: 221 VFTFAQGRYRGRVPSARYVEAKFREAALRAGLDPRRFTPHKLRHAYATFLVERGVQLDAV 280

Query: 308 MATYGWKTVDQAETYTKGADRIRLGIKNSR 337
               G +++   + Y   A R RL    SR
Sbjct: 281 KDLLGHESIATTQIYLH-ASRERLKEAASR 309


>gi|120435029|ref|YP_860715.1| phage integrase family protein [Gramella forsetii KT0803]
 gi|117577179|emb|CAL65648.1| phage integrase family protein [Gramella forsetii KT0803]
          Length = 412

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 49/271 (18%), Positives = 92/271 (33%), Gaps = 32/271 (11%)

Query: 85  GSLAVNSRISFE---SYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHTP----SSAI 134
              A  +   +     +    +++     D   + +  K I       K T     +SAI
Sbjct: 135 KDFATGTAERYRTCKKHVAAFVKQKYNKNDIPVQDVDHKFITGLEYYLKTTRKCAHNSAI 194

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQ 191
           +++T+ + + + A   +++  +P L  +  K K       T+E++Q+            Q
Sbjct: 195 KYITNFKKIIRIAHANDWIDKDPFLHWK-GKLKIVEREFLTEEEIQKIIDLHLKMERLDQ 253

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHL-----QNNIFSIKTQKTGTIITVELPDGFMKLLA 246
            R  F F  ++GL  +D  +     +            K  KT T   + +      ++ 
Sbjct: 254 VRDIFIFCCFTGLAYADVKKLNRGDISVGADGEEWVKTKRSKTDTRSNIPILPIAKTIIE 313

Query: 247 MTPI-----GKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSAT-ISA 298
                     K+        QKMNA     + K  A  AG+  N + H  R   AT ++ 
Sbjct: 314 KYKDNELLKEKDLVLPVLSNQKMNA-----YIKEIANLAGISKNLTFHLARHTFATTVTL 368

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRI 329
             G     +    G   +   + Y K  D  
Sbjct: 369 TNGVPIESVSKMLGHTNLKTTQHYAKILDMK 399


>gi|218711152|ref|YP_002418772.1| putative Shufflon-specific DNA recombinase [Escherichia coli ED1a]
 gi|218349935|emb|CAQ87344.1| putative Shufflon-specific DNA recombinase [Escherichia coli ED1a]
          Length = 397

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 47/282 (16%), Positives = 96/282 (34%), Gaps = 19/282 (6%)

Query: 57  KREYINSPRKKPTTLKWLISEYRKSAHWGS---LAVNSRIS---FESYFDQIIRKSGDFD 110
           K +     + +  +L   + +Y K+        L    R++        D+ + +    D
Sbjct: 21  KADMFQKNKTRKMSLSRALDKYLKTVSVHKKGHLQEFYRVNVIKRHPMADRYMDEITTID 80

Query: 111 YRKITTKHIRSG--VESRKHTPSSAIQFLTSMRVLFKWA-VRQEYVAINPCLSVERPKRK 167
                 + +        R+ T ++    L  +  LF  A V      +NP   V +PK  
Sbjct: 81  IAGYRDQRLAQINPRTGRQITGNTVRLELALLSSLFNIARVEWGTCRMNPVELVRKPKIS 140

Query: 168 TEGIRPWTKEDMQQF-KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSI 224
               R  T  + ++  + F  +  Q  + F   L + +R  +      +HL     +  +
Sbjct: 141 NGRDRRLTSGEERRISRYFRDKNQQLYVIFHLALETAMRQGEILTLRWEHLDLQHGVAHL 200

Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-N 283
              K G    V L       L + P       IN +     ++ F   ++       + N
Sbjct: 201 PETKNGLPRDVPLSRKARNYLQILPQQ-----INGNVFSYTSSGFKSAWRTALLDLKIEN 255

Query: 284 KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTK 324
              H +R  + +   + G     E+ A  G ++++  + YT 
Sbjct: 256 LHFHDLRHEAISRFFELGTLNVIEVAAISGHRSLNMLKRYTH 297


>gi|229491429|ref|ZP_04385253.1| site-specific tyrosine recombinase XerC [Rhodococcus erythropolis
           SK121]
 gi|229321714|gb|EEN87511.1| site-specific tyrosine recombinase XerC [Rhodococcus erythropolis
           SK121]
          Length = 308

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/293 (13%), Positives = 94/293 (32%), Gaps = 30/293 (10%)

Query: 68  PTTLKWLISEYRKSAHW-GSLAVNSRISF----ESYFDQIIRKSGDFDYRKITTKHIRSG 122
           P +L   +  Y +        + ++  ++     +        S + D  ++    +RS 
Sbjct: 6   PASLSVHLDAYAEHLRLSRGRSEHTIRAYVGDARALLTHFSAGSENADLDRLDLSVMRSW 65

Query: 123 VESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK--- 176
           + ++       ++  +  +S R    W  +   ++++P   +  P  +        +   
Sbjct: 66  LAAQNAVGTARTTVARRASSARGFTAWLAQTGRISVDPGTRLAAPPARRTLPTVLRQSQA 125

Query: 177 -EDMQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTG 230
            + M   +S          + RL  E L  +G+R  + C   V+ +  +   ++   K  
Sbjct: 126 LDAMDAAESGAQQQEPLALRDRLIVELLYSTGIRVGELCGLDVESVDADRRLLRVLGKGN 185

Query: 231 TIITVELPDGFMKLLA----------MTPIGKETFFINNDKQKMNATQFSIWFKA--KAT 278
              +V         L            +        +     +++  Q          A 
Sbjct: 186 KERSVPYGLPAESALNGWLEHGRPALCSDRSGRALLLGVRGGRLDQRQARSVVHETMAAI 245

Query: 279 KAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330
               +   HG+R  +AT   + GA    +    G  ++   + YT    +R+R
Sbjct: 246 PGAPDMGPHGLRHSAATHLLEGGADLRVVQELLGHASLATTQLYTHVSVERLR 298


>gi|260587709|ref|ZP_05853622.1| integrase/recombinase, phage integrase family [Blautia hansenii DSM
           20583]
 gi|331084000|ref|ZP_08333107.1| hypothetical protein HMPREF0992_02031 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260541974|gb|EEX22543.1| integrase/recombinase, phage integrase family [Blautia hansenii DSM
           20583]
 gi|330402362|gb|EGG81932.1| hypothetical protein HMPREF0992_02031 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 355

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 43/318 (13%), Positives = 100/318 (31%), Gaps = 59/318 (18%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF---------------DYRKITTKH 118
            + +Y ++    + +  +R+S+        R   +                D   +    
Sbjct: 29  YVKDYFRAKE-PTTSDKTRLSYAYDLRVFFRFLQETNPSLKEKSLSEISIQDLSLLEPVD 87

Query: 119 IRSGVESRKHTPSSAIQF-----------LTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167
                E  K   S+  +            ++ +R  + +  +++ +  NP   V+ PK K
Sbjct: 88  FEEFQEYLKAYQSADNKLETNSRTGIARKMSCLRSFYDYLCKRQLLTSNPVRLVDMPKIK 147

Query: 168 TEGIRPWTKEDMQ----------------QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCR 211
            + I     +++                 +   +  +  +       LL +G+R S+   
Sbjct: 148 EKAIIQLDPDEVANLLDYIENYGKQLSGVKLYHYNKQKYRDIAIVTLLLGTGVRVSELVG 207

Query: 212 AGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLA---------MTPIGK--ETFFIN 258
             +  +   NN   I  +K G  + V       + L          +TP+    +  F++
Sbjct: 208 LNIGDIDFKNNGIRI-LRKGGNEMIVYFGAEVEQALKDYLEISRNSITPLSGHEDALFLS 266

Query: 259 NDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD 317
             +++++        K  A+   V   + H +R    T         + +    G   V+
Sbjct: 267 GQRKRISVDAVEKMVKKYASAVSVKTITPHKLRSTYGTALYRETGDIYLVADVLGHSDVN 326

Query: 318 QA-ETYTKGADRIRLGIK 334
              + Y K +D  R    
Sbjct: 327 TTKKHYAKLSDERRRSAS 344


>gi|150395893|ref|YP_001326360.1| phage integrase family protein [Sinorhizobium medicae WSM419]
 gi|150027408|gb|ABR59525.1| phage integrase family protein [Sinorhizobium medicae WSM419]
          Length = 343

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 46/267 (17%), Positives = 87/267 (32%), Gaps = 14/267 (5%)

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSR-ISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
           K TTL  L+  Y     W          +F    D+I+       + +     I   +  
Sbjct: 70  KETTLAELLQRY-ADILWDEGKHKYNVKAFIGELDEILLGKRFSTFSQEMLDGIVGALRK 128

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           R ++ ++  + + ++  L + A +   +   P    +R K K   +R    ++ +     
Sbjct: 129 RGNSNATINRKMAALGKLLRKAYKMGDIHNLP--EFKRQKEKAGRLRFLEADEEEVLFRE 186

Query: 186 WSEGSQPRLAFEFLLY-SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
            +  S+  L     L  +G R  ++       +     +    K+G   TV L       
Sbjct: 187 IASRSELYLYLSIFLVDTGARLGEAIDLKWNDIHEGRATFWVTKSGRSRTVPLTLRAKDA 246

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV----NKSAHGVRKFSATISADA 300
           L          F   D+QK     F   + A    AG+    +   H +R   A+     
Sbjct: 247 LKKVADRSPGPFSRIDQQK-----FRAIWNAAKVDAGLGDEEDIVPHILRHTCASRLVRG 301

Query: 301 GATAHELMATYGWKTVDQAETYTKGAD 327
           G     +    G +T++    Y   A 
Sbjct: 302 GIDLRRVQMWLGHQTLEMTMRYAHLAS 328


>gi|329955504|ref|ZP_08296412.1| site-specific recombinase, phage integrase family [Bacteroides
           clarus YIT 12056]
 gi|328525907|gb|EGF52931.1| site-specific recombinase, phage integrase family [Bacteroides
           clarus YIT 12056]
          Length = 333

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 38/214 (17%), Positives = 82/214 (38%), Gaps = 14/214 (6%)

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           + +SA  + ++ R L K A +++ +  N    +++ + K    +  T  ++++  +   +
Sbjct: 122 SRNSAAGYFSTFRALLKIAYQEKMLRENLNDFIDKIEWKEVKKQYLTLAEVKKLAATPCK 181

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVELPDGFMK 243
               + A  F   +GLR SD  +    +++          I T+KT T  T+ + +  ++
Sbjct: 182 IPVLKQASLFSCMTGLRISDILQLTWDNIEVGPDNGYYIRICTEKTETEATLPISNEALE 241

Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301
            L   P     F      + +     +   K   ++AG+ K  + H  R   A I    G
Sbjct: 242 -LCGIPGSGRVF------KGLTRAMTNQPLKQWISEAGIKKHITFHCFRHSYAVIQISLG 294

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335
              + +      K V   + Y    +  +    N
Sbjct: 295 TDIYTVSKMLTHKNVSTTQIYADLVNSKKRETAN 328


>gi|227461184|gb|ACP39539.1| putative integron integrase [uncultured microorganism]
          Length = 317

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 42/306 (13%), Positives = 93/306 (30%), Gaps = 62/306 (20%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129
           ++ + R+   +   ++ +  ++  +    IR  G      + +  + + +      RK +
Sbjct: 16  VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75

Query: 130 PSSAIQFLTSMRVLFK--WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            S+  Q L ++   +         ++       + RP+         T +++ +   F  
Sbjct: 76  VSTHRQALAALLFFYGKVLCTDLPWLQ-----EIGRPRPSRRLPVVLTPDEVVRILGFL- 129

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
           EG   RL  + L  +G+R S+  +  V+     +    ++  K      + LP+     L
Sbjct: 130 EGEH-RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSL 188

Query: 246 AMTPIGKETFFINN---------------------------------------------D 260
                    +++ +                                              
Sbjct: 189 REQLSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVR 248

Query: 261 KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           +  M    F   FK    +AG+ K  + H +R   AT    +G     +    G   V  
Sbjct: 249 RHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVST 308

Query: 319 AETYTK 324
              YT 
Sbjct: 309 TMIYTH 314


>gi|218699855|ref|YP_002407484.1| putative defective integrase; Qin prophage [Escherichia coli IAI39]
 gi|256022761|ref|ZP_05436626.1| putative defective integrase; Qin prophage [Escherichia sp.
           4_1_40B]
 gi|300939773|ref|ZP_07154414.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 21-1]
 gi|301647740|ref|ZP_07247532.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 146-1]
 gi|331642162|ref|ZP_08343297.1| putative lambdoid prophage Qin defective integrase [Escherichia
           coli H736]
 gi|218369841|emb|CAR17612.1| putative defective integrase; Qin prophage [Escherichia coli IAI39]
 gi|300455386|gb|EFK18879.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 21-1]
 gi|301074110|gb|EFK88916.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 146-1]
 gi|315619033|gb|EFU99615.1| phage integrase family protein [Escherichia coli 3431]
 gi|331038960|gb|EGI11180.1| putative lambdoid prophage Qin defective integrase [Escherichia
           coli H736]
          Length = 431

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 45/317 (14%), Positives = 97/317 (30%), Gaps = 64/317 (20%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK-ITTKHIRSGVESR-- 126
           T+K L  ++        +A  S  ++ +    I+   G+ +    I  + +    +    
Sbjct: 85  TIKELAEKFLALKE-TEVAKTSLNTYRAVIKNILSIIGEKNLASSINKEKLLEVRKELLT 143

Query: 127 --------------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
                           +  +   ++T++  +F++ V   Y+A NP   +   K       
Sbjct: 144 GYQIPKSNYIVTQPGRSAVTVNNYMTNLNAVFQFGVDNGYLADNPFKGISPLKESRTIPD 203

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK----- 225
           P ++E+  +         Q +  +   +Y+G+R  + C  G + +   N    I+     
Sbjct: 204 PLSREEFIRLIDAC-RNQQAKNLWCVSVYTGVRPGELCALGWEDIDLKNGTMMIRRNLAK 262

Query: 226 --------TQKTGTIITV--ELPDGFMKLLAMTPIGKETFF------------------- 256
                      T  +I +     D     + +T + KE                      
Sbjct: 263 DRFTVPKTQAGTNRVIHLIKPAIDALRSQMTLTRLSKEHIIDVHLREYGRTEKQKCTFVF 322

Query: 257 -------INNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELM 308
                  + N             + A   +AG+ ++ ++  R   A  S  AGA    + 
Sbjct: 323 QPEVSARVKNYGDHFTVDSIRQMWDAAIKRAGLRHRKSYQSRHTYACWSLTAGANPAFIA 382

Query: 309 ATYGWKTVDQA-ETYTK 324
              G        + Y K
Sbjct: 383 NQMGHADAQMVFQVYGK 399


>gi|171315564|ref|ZP_02904800.1| integrase family protein [Burkholderia ambifaria MEX-5]
 gi|171099401|gb|EDT44139.1| integrase family protein [Burkholderia ambifaria MEX-5]
          Length = 343

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 46/305 (15%), Positives = 93/305 (30%), Gaps = 17/305 (5%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYR-KSAHWGS 86
             G+RIR           AY + L     +    +  R+   +L+ L+  +  +     S
Sbjct: 19  RGGKRIR-KSFRTHAEAKAYENWLRVKAAENPDWSPVRRDSRSLRELVQLWYDRHGRELS 77

Query: 87  LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKW 146
               +R    +   ++   + D  +        R+       + S+  +   ++R +F  
Sbjct: 78  SGAGTRDRLFAACVEMGEPTVD-SFSADVFASYRARRLEAGISASNMNREHATLRAVFNE 136

Query: 147 AVRQEYVAI-NPCLSVERPKRKTEGIRPWTKEDMQQFKS--FWSEGSQPRLAFEFLLYSG 203
             R       NP   + + K +   +     E +++       S      L     L +G
Sbjct: 137 LSRLGLWERENPLGKLRQFKVQERELSFLDDESIRELLRELRASRNPGAELIAVVCLSTG 196

Query: 204 LRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK 263
            R S++       ++N        K+     V + D     +                 +
Sbjct: 197 ARWSEAETLTRSQVRNGQIQFARTKSRRNRAVPIDDRLQHRVLAHADEHG------RGVR 250

Query: 264 MNATQFSIWFKAKATKAGVNKSA----HGVRKFSATISADAGATAHELMATYGWKTVDQA 319
           + +T FS  F+    +AG+   A    H +R   A+     G     L    G   +   
Sbjct: 251 IFSTAFSA-FREAVERAGLELPAGQLTHVLRHTFASHFMMNGGNILTLQRILGHANLTMT 309

Query: 320 ETYTK 324
             Y  
Sbjct: 310 MRYAH 314


>gi|160894098|ref|ZP_02074876.1| hypothetical protein CLOL250_01652 [Clostridium sp. L2-50]
 gi|156864131|gb|EDO57562.1| hypothetical protein CLOL250_01652 [Clostridium sp. L2-50]
          Length = 405

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 51/272 (18%), Positives = 86/272 (31%), Gaps = 23/272 (8%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKH 128
           T+   +  Y +     SL   S  +     +  ++    D     IT   I     +   
Sbjct: 57  TMGEFVEVYFRDKS-QSLKDRSIKNKRDTMNAQLLPYFKDRPMNSITPAEIIQWQNTIIE 115

Query: 129 TPSSAIQFLTS---MRVLFKWAVRQEYVAINPCLSVER-PKRKTEGIRPWTKEDMQQFKS 184
              S     T    M  LF  A     +A NPC  V+R  K   + ++ WT E+ +QF +
Sbjct: 116 KGYSDDYLKTIQNQMTALFNHAKNIYNLADNPCDKVKRMGKTSKKKMKFWTIEEYRQFMT 175

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-----GTII------ 233
               GS+  + FE L ++G R  ++       +      +   KT     G  +      
Sbjct: 176 GIEPGSKYYVLFELLFWTGAREGEALSITPADIDFERNLLHINKTYYRMHGEDVITSPKT 235

Query: 234 -----TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAH 287
                T+ +P+   K +            +     M         K    K GV K   H
Sbjct: 236 EESNRTISIPEFLKKEIQDYISRLYELPEDERIFPMVHEAVQHKLKQVVQKTGVKKIRVH 295

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQA 319
            +R   A    + G     +   +G   +   
Sbjct: 296 DIRHSHAAFLINKGVPPLMIKERFGHTDIRIT 327


>gi|42563728|gb|AAS20532.1| Int1 [Pseudomonas aeruginosa]
          Length = 337

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 42/306 (13%), Positives = 93/306 (30%), Gaps = 62/306 (20%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129
           ++ + R+   +   ++ +  ++  +    IR  G      + +  + + +      RK +
Sbjct: 16  VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75

Query: 130 PSSAIQFLTSMRVLFK--WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            S+  Q L ++   +         ++       + RP+         T +++ +   F  
Sbjct: 76  VSTHRQALAALLFFYGKVLCTDLPWLQ-----EIGRPRPSRRLPVVLTPDEVVRILGFL- 129

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
           EG   RL  + L  +G+R S+  +  V+     +    ++  K      + LP+     L
Sbjct: 130 EGEH-RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSL 188

Query: 246 AMTPIGKETFFINN---------------------------------------------D 260
                    +++ +                                              
Sbjct: 189 REQLSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVR 248

Query: 261 KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           +  M    F   FK    +AG+ K  + H +R   AT    +G     +    G   V  
Sbjct: 249 RHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVST 308

Query: 319 AETYTK 324
              YT 
Sbjct: 309 TMIYTH 314


>gi|9507567|ref|NP_052898.1| integrase [Plasmid R100]
 gi|17530624|ref|NP_511222.1| integrase [IncN plasmid R46]
 gi|18466564|ref|NP_569372.1| putative integrase [Salmonella enterica subsp. enterica serovar
           Typhi str. CT18]
 gi|31795140|ref|NP_857998.1| DNA integrase [uncultured bacterium]
 gi|51492558|ref|YP_067855.1| integrase/recombinase [Aeromonas punctata]
 gi|55275332|ref|YP_133854.1| DNA integrase [uncultured bacterium]
 gi|58000325|ref|YP_190211.1| integrase [Escherichia coli]
 gi|60115569|ref|YP_209361.1| integrase [Salmonella enterica subsp. enterica serovar Choleraesuis
           str. SC-B67]
 gi|66968565|ref|YP_245442.1| IntI1 DNA integrase [Pseudomonas aeruginosa]
 gi|77993248|ref|YP_358838.1| integrase [IncP-1beta multiresistance plasmid pB8]
 gi|111038080|ref|YP_709167.1| IntI1 integrase [IncP-1 plasmid pKJK5]
 gi|133756458|ref|YP_001096414.1| Tn21 integrase [Escherichia coli]
 gi|134044876|ref|YP_001102252.1| integrase IntI1 for transposon Tn21 [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|145301311|ref|YP_001144151.1| integrase/recombinase [Aeromonas salmonicida subsp. salmonicida
           A449]
 gi|156144910|ref|YP_001427371.1| integrase [Pseudomonas aeruginosa]
 gi|160431700|ref|YP_001552088.1| integrase [Salmonella enterica subsp. enterica serovar Dublin]
 gi|165938049|ref|ZP_02226609.1| integrase/recombinase (E2 protein) [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|170650836|ref|YP_001740003.1| integrase/recombinase [Escherichia coli SMS-3-5]
 gi|187736864|ref|YP_001816602.1| IntI1 [Escherichia coli 1520]
 gi|190410293|ref|YP_001965796.1| intI1 [Klebsiella pneumoniae]
 gi|190570443|ref|YP_001966865.1| integrase [Aeromonas hydrophila]
 gi|190576895|ref|YP_001966227.1| IntI1 integrase [Klebsiella pneumoniae]
 gi|194430536|ref|ZP_03063005.1| integrase/recombinase [Escherichia coli B171]
 gi|194439843|ref|ZP_03071908.1| integrase/recombinase [Escherichia coli 101-1]
 gi|194733854|ref|YP_002112947.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|209901149|ref|YP_002286930.1| integrase/recombinase [Klebsiella pneumoniae]
 gi|215528097|ref|YP_002332850.1| integrase [Klebsiella pneumoniae]
 gi|226807711|ref|YP_002791406.1| IntI1 [Enterobacter cloacae]
 gi|226807858|ref|YP_002791507.1| IntI1 integrase [Enterobacter cloacae]
 gi|226810024|ref|YP_002791719.1| IntI1 [Enterobacter cloacae]
 gi|226810139|ref|YP_002791835.1| IntI1 integrase [Enterobacter cloacae]
 gi|256367791|ref|YP_003108348.1| integrase/recombinase [Escherichia coli]
 gi|284000137|ref|YP_003377824.1| integrase IntL [Escherichia coli O26:H-]
 gi|297622240|ref|YP_003675796.1| IntI1 [Klebsiella oxytoca KOX105]
 gi|300819973|ref|ZP_07100154.1| integron integrase [Escherichia coli MS 107-1]
 gi|300906153|ref|ZP_07123870.1| integron integrase [Escherichia coli MS 84-1]
 gi|300955292|ref|ZP_07167681.1| integron integrase [Escherichia coli MS 175-1]
 gi|301302513|ref|ZP_07208643.1| integron integrase [Escherichia coli MS 124-1]
 gi|301329501|ref|ZP_07222300.1| integron integrase [Escherichia coli MS 78-1]
 gi|305696852|ref|YP_003864166.1| integrase [Salmonella enterica subsp. enterica serovar Typhimurium]
 gi|310286416|ref|YP_003937677.1| integrase/recombinase [Escherichia coli]
 gi|313107841|ref|ZP_07794014.1| integrase/recombinase (E2 protein) [Pseudomonas aeruginosa 39016]
 gi|330011345|ref|ZP_08307041.1| integron integrase [Klebsiella sp. MS 92-3]
 gi|331680833|ref|ZP_08381473.1| integrase/recombinase (E2 protein) [Escherichia coli H299]
 gi|50402171|sp|P62590|INT2_ECOLX RecName: Full=Integrase/recombinase; AltName: Full=E2 protein
 gi|50402172|sp|P62591|INT2_PSEAE RecName: Full=Integrase/recombinase; AltName: Full=E2 protein
 gi|50402173|sp|P62592|INT2_SALTI RecName: Full=Integrase/recombinase; AltName: Full=E2 protein
 gi|2120150|pir||I39499 integrase - Acinetobacter baumannii
 gi|6752460|gb|AAF27722.1|AF156486_1 integrase INTI1 [Klebsiella pneumoniae]
 gi|7381448|gb|AAF61482.1|AF191564_1 integrase [Pseudomonas aeruginosa]
 gi|13940487|gb|AAK50385.1|AF313472_1 IntI1 integrase [Pseudomonas aeruginosa]
 gi|15384483|gb|AAK96393.1|AF313471_1 IntI1 integrase [Pseudomonas aeruginosa]
 gi|18958400|gb|AAL82587.1|AF355189_1 integrase IntI1 [Pseudomonas aeruginosa]
 gi|48206|emb|CAA31361.1| unnamed protein product [Escherichia coli]
 gi|151300|gb|AAA25857.1| integrase [Pseudomonas aeruginosa]
 gi|151817|gb|AAB59081.1| IntI1 integrase [Plasmid R46]
 gi|530814|gb|AAC44315.1| DNA integrase [Pseudomonas aeruginosa]
 gi|596251|gb|AAA56784.1| integrase [Acinetobacter baumannii]
 gi|3088617|gb|AAC14727.1| DNA integrase [Plasmid NR79]
 gi|3513661|gb|AAC33911.1| IntI1 DNA integrase [Escherichia coli]
 gi|5103166|dbj|BAA78802.1| integrase for In2 [Plasmid R100]
 gi|16357506|gb|AAK60185.2| integrase IntI1 [Escherichia coli]
 gi|16505880|emb|CAD09758.1| putative integrase [Salmonella enterica subsp. enterica serovar
           Typhi str. CT18]
 gi|17342661|gb|AAL13418.1| integrase [IncN plasmid R46]
 gi|21898667|gb|AAM77079.1| integrase [uncultured bacterium]
 gi|29329827|emb|CAD57181.1| integrase [Aeromonas salmonicida]
 gi|30349168|gb|AAP20904.1| integrase [Escherichia coli]
 gi|30349183|gb|AAP20918.1| integrase [Escherichia coli]
 gi|30350250|gb|AAP22972.1| IntI1 [Escherichia coli]
 gi|31746384|emb|CAD97509.1| DNA integrase [uncultured bacterium]
 gi|33086394|emb|CAD80250.1| integrase class1 [Pseudomonas aeruginosa]
 gi|34556020|emb|CAD57194.1| integrase [Aeromonas salmonicida]
 gi|40645553|dbj|BAD06398.1| DNA integrase [Klebsiella pneumoniae]
 gi|42391698|dbj|BAD08688.1| DNA integrase [Klebsiella pneumoniae]
 gi|42543943|dbj|BAD11025.1| DNA integrase [Klebsiella pneumoniae]
 gi|45502089|emb|CAF31510.1| IntI1 DNA integrase [Salmonella enterica]
 gi|45758127|gb|AAS76339.1| integrase [Salmonella enterica subsp. enterica serovar Choleraesuis
           str. SC-B67]
 gi|45925935|gb|AAS79108.1| integrase [Shigella flexneri 2a]
 gi|45934117|gb|AAS79142.1| integrase [Pseudomonas aeruginosa]
 gi|46559086|emb|CAE52510.2| DNA integrase [Pseudomonas aeruginosa]
 gi|47716827|gb|AAT37602.1| integrase [Escherichia coli]
 gi|48526060|gb|AAT45232.1| integrase [Salmonella enterica subsp. enterica serovar
           Choleraesuis]
 gi|51470601|emb|CAG15092.1| integrase/recombinase [Aeromonas caviae]
 gi|54300645|gb|AAV32837.1| integrase [Pseudomonas aeruginosa]
 gi|54887450|emb|CAG34228.1| IntI1 integrase [Salmonella enterica subsp. enterica serovar
           Typhimurium]
 gi|54887458|emb|CAG34236.1| IntI1 integrase [Salmonella enterica subsp. enterica serovar
           Typhimurium]
 gi|54969638|emb|CAG27804.1| DNA integrase [uncultured bacterium]
 gi|66259843|gb|AAY43107.1| integrase [Enterobacter cloacae]
 gi|66862647|emb|CAI46945.1| IntI1 DNA integrase [Pseudomonas aeruginosa]
 gi|71361872|gb|AAZ30042.1| Integrase [Enterobacter cloacae]
 gi|72416446|emb|CAF31402.2| type I integrase [Pseudomonas aeruginosa]
 gi|77734001|emb|CAI10765.1| integrase [IncP-1beta multiresistance plasmid pB8]
 gi|81072647|gb|ABB55351.1| IntI1 integrase [Enterobacter cloacae]
 gi|87295510|gb|ABD37051.1| IntI1 [Escherichia coli]
 gi|88702681|gb|ABD49194.1| integrase [Achromobacter xylosoxidans]
 gi|88911246|gb|ABD58919.1| IntI1 [Pseudomonas aeruginosa]
 gi|89033269|gb|ABD59947.1| Tn21 integrase [Escherichia coli]
 gi|89211896|gb|ABD63310.1| IntI1 [Bordetella bronchiseptica]
 gi|89243390|gb|ABD64875.1| integrase [Aeromonas hydrophila]
 gi|89330180|emb|CAJ84004.1| integrase [Salmonella enterica subsp. enterica serovar Keurmassar]
 gi|92112119|gb|ABE73722.1| integrase [Acidovorax sp. MUL2G8]
 gi|92112131|gb|ABE73754.1| integrase [Burkholderiales bacterium MUL2G11]
 gi|110264479|gb|ABG56842.1| IntI1 integrase [Klebsiella pneumoniae]
 gi|110781085|emb|CAK02669.1| IntI1 integrase [IncP-1 plasmid pKJK5]
 gi|112553509|gb|ABI20478.1| integrase [uncultured bacterium]
 gi|114147178|gb|ABI50465.1| integrase [Klebsiella pneumoniae]
 gi|114147192|gb|ABI50478.1| IntI1 [Klebsiella pneumoniae]
 gi|116294895|gb|ABJ98410.1| IntI1 [Shigella flexneri 5]
 gi|118402696|emb|CAI94353.1| type I integrase [Pseudomonas aeruginosa]
 gi|118402704|emb|CAI94360.1| type I integrase [Pseudomonas aeruginosa]
 gi|118402713|emb|CAI94368.1| type I integrase [Pseudomonas aeruginosa]
 gi|118402722|emb|CAI94376.1| type I integrase [Pseudomonas aeruginosa]
 gi|119116290|emb|CAH10848.2| integrase-recombinase [Pseudomonas aeruginosa]
 gi|133905410|gb|ABO42172.1| integrase IntI1 for transposon Tn21 [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|142856088|gb|ABO92403.1| integrase/recombinase [Aeromonas salmonicida subsp. salmonicida
           A449]
 gi|145848971|emb|CAM91521.1| integrase intiI [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|146151087|gb|ABQ02853.1| intI1 [Klebsiella pneumoniae]
 gi|148455768|gb|ABQ65126.1| IntI1 [Pseudomonas aeruginosa]
 gi|156104633|emb|CAO91764.1| integrase [Pseudomonas aeruginosa]
 gi|159885569|dbj|BAF93171.1| integrase [Salmonella enterica subsp. enterica serovar Dublin]
 gi|165914072|gb|EDR32689.1| integrase/recombinase (E2 protein) [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165928622|gb|ABY74390.1| integrase [Klebsiella pneumoniae]
 gi|170293866|gb|ACB13001.1| IntI1 [Hydrogenophaga sp. PL2G6]
 gi|170522112|gb|ACB20289.1| integrase/recombinase [Escherichia coli SMS-3-5]
 gi|170785722|gb|ACB37786.1| IntI1 [Klebsiella pneumoniae]
 gi|172051446|emb|CAP07788.1| IntI1 [Escherichia coli]
 gi|182382566|gb|ACB87555.1| DNA integrase [Pseudomonas aeruginosa]
 gi|190683007|gb|ACE81789.1| IntI1 [Enterobacter cloacae]
 gi|192822646|gb|ACF06155.1| class 1 integrase [Klebsiella pneumoniae]
 gi|193409924|gb|ACF17979.1| IntI1 [Escherichia coli]
 gi|194326135|emb|CAQ64786.1| intergrase [Cloning vector pRG930cm]
 gi|194359398|gb|AAK59383.2| DNA integrase [Pseudomonas aeruginosa]
 gi|194411419|gb|EDX27772.1| integrase/recombinase [Escherichia coli B171]
 gi|194421233|gb|EDX37255.1| integrase/recombinase [Escherichia coli 101-1]
 gi|194709356|gb|ACF88579.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197359178|gb|ACH69795.1| class I integrase [Pseudomonas aeruginosa]
 gi|207581351|gb|ACI24747.1| integrase [Salmonella enterica subsp. enterica serovar Newport]
 gi|208436691|gb|ACI28900.1| IntI1 [Pseudomonas aeruginosa]
 gi|209574100|gb|ACI62988.1| integrase/recombinase [Klebsiella pneumoniae]
 gi|225730198|gb|ACO24910.1| integrase [Enterobacter aerogenes]
 gi|225730210|gb|ACO24921.1| integrase [Escherichia coli]
 gi|226425937|gb|ACO54030.1| IntI1 [Enterobacter cloacae]
 gi|226426085|gb|ACO54178.1| IntI1 integrase [Enterobacter cloacae]
 gi|226426251|gb|ACO54343.1| IntI1 [Enterobacter cloacae]
 gi|226426366|gb|ACO54458.1| IntI1 integrase [Enterobacter cloacae]
 gi|227809552|gb|ACP40994.1| DNA integrase intI1 [Shigella flexneri]
 gi|228480728|gb|ACQ42055.1| integrase/recombinase [Escherichia coli]
 gi|238773820|dbj|BAH66385.1| integrase [Pseudomonas aeruginosa]
 gi|247712942|gb|ACT09123.1| IntI1 [Pseudomonas aeruginosa]
 gi|253559511|gb|ACT32445.1| class I integrase [Xanthomonas oryzae pv. oryzae]
 gi|253559513|gb|ACT32446.1| class I integrase [Xanthomonas oryzae pv. oryzae]
 gi|254914163|gb|ACT83767.1| integrase IntI1 [Escherichia coli]
 gi|257043820|gb|ACV33237.1| DNA integrase [Enterobacter cloacae]
 gi|257043842|gb|ACV33257.1| DNA integrase [Pseudomonas aeruginosa]
 gi|257043850|gb|ACV33264.1| DNA integrase [Pseudomonas aeruginosa]
 gi|257123763|gb|ACV41753.1| IntI1 [Pseudomonas aeruginosa]
 gi|260677486|gb|ACX47970.1| integrase [Pseudomonas aeruginosa]
 gi|267850619|gb|ACY82390.1| integrase [Salmonella enterica subsp. enterica serovar Typhimurium]
 gi|281323234|gb|ADA60225.1| integrase/recombinase [Klebsiella oxytoca]
 gi|281600419|gb|ADA73403.1| Integrase/recombinase [Shigella flexneri 2002017]
 gi|283445077|gb|ADB20421.1| integrase IntI1 [Escherichia coli O26:H-]
 gi|284923819|emb|CBG36917.1| integrase [Escherichia coli 042]
 gi|289064109|gb|ADC80448.1| class 1 integron integrase IntI1 [Pseudomonas alcaligenes]
 gi|289064116|gb|ADC80454.1| class 1 integron integrase IntI1 [Pseudomonas oryzihabitans]
 gi|289064135|gb|ADC80472.1| class 1 integron integrase IntI1 [Comamonas testosteroni]
 gi|289065278|gb|ADC80781.1| IntI1 [Escherichia coli]
 gi|289065352|gb|ADC80852.1| IntI1 [Escherichia coli]
 gi|289551904|gb|ADD10607.1| IntI1 [Pseudomonas putida]
 gi|290964843|emb|CBH41111.1| class 1 integrase [Kluyvera georgiana]
 gi|295981465|emb|CBL87884.1| IntI1 integrase [Pseudomonas sp. Tik3]
 gi|296492059|gb|ADH29561.1| DNA integrase IntI1 [Klebsiella oxytoca KOX105]
 gi|299483209|gb|ADJ19347.1| IntI1 [Enterobacter cloacae]
 gi|300317797|gb|EFJ67581.1| integron integrase [Escherichia coli MS 175-1]
 gi|300402043|gb|EFJ85581.1| integron integrase [Escherichia coli MS 84-1]
 gi|300527473|gb|EFK48535.1| integron integrase [Escherichia coli MS 107-1]
 gi|300842038|gb|EFK69798.1| integron integrase [Escherichia coli MS 124-1]
 gi|300844364|gb|EFK72124.1| integron integrase [Escherichia coli MS 78-1]
 gi|302127772|emb|CBO78185.1| class 1 integrase [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|304376153|dbj|BAJ15315.1| integrase [Salmonella enterica subsp. enterica serovar Typhimurium]
 gi|308826745|emb|CBX36000.1| Integrase/recombinase [Escherichia coli]
 gi|310880516|gb|EFQ39110.1| integrase/recombinase (E2 protein) [Pseudomonas aeruginosa 39016]
 gi|312261322|gb|ADQ54342.1| integrase [Klebsiella pneumoniae]
 gi|315252947|gb|EFU32915.1| integron integrase [Escherichia coli MS 85-1]
 gi|315667013|gb|ADU55733.1| intI1 [Pseudomonas sp. 11BF10]
 gi|317109804|gb|ADU90743.1| Integrase/recombinase [uncultured bacterium]
 gi|321271381|gb|ADW79471.1| class 1 integron integrase IntI1 [Escherichia coli]
 gi|323903319|gb|ADY11083.1| IntI1 DNA integrase [Escherichia coli]
 gi|323959138|gb|EGB54804.1| integron integrase [Escherichia coli H489]
 gi|324020458|gb|EGB89677.1| integron integrase [Escherichia coli MS 117-3]
 gi|324110986|gb|EGC04975.1| integron integrase [Escherichia fergusonii B253]
 gi|325491815|gb|ADZ16819.1| class 1 integrase [Pseudomonas fluorescens]
 gi|325495829|gb|EGC93689.1| integrase [Escherichia fergusonii ECD227]
 gi|327536588|gb|AEA95421.1| integron integrase IntI1 [Salmonella enterica subsp. enterica
           serovar Dublin]
 gi|327536704|gb|AEA95536.1| integron integrase IntI1 [Salmonella enterica subsp. enterica
           serovar Dublin]
 gi|328534216|gb|EGF60841.1| integron integrase [Klebsiella sp. MS 92-3]
 gi|331081821|gb|EGI52979.1| integrase/recombinase (E2 protein) [Escherichia coli H299]
          Length = 337

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 42/306 (13%), Positives = 93/306 (30%), Gaps = 62/306 (20%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129
           ++ + R+   +   ++ +  ++  +    IR  G      + +  + + +      RK +
Sbjct: 16  VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75

Query: 130 PSSAIQFLTSMRVLFK--WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            S+  Q L ++   +         ++       + RP+         T +++ +   F  
Sbjct: 76  VSTHRQALAALLFFYGKVLCTDLPWLQ-----EIGRPRPSRRLPVVLTPDEVVRILGFL- 129

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
           EG   RL  + L  +G+R S+  +  V+     +    ++  K      + LP+     L
Sbjct: 130 EGEH-RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSL 188

Query: 246 AMTPIGKETFFINN---------------------------------------------D 260
                    +++ +                                              
Sbjct: 189 REQLSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVR 248

Query: 261 KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           +  M    F   FK    +AG+ K  + H +R   AT    +G     +    G   V  
Sbjct: 249 RHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVST 308

Query: 319 AETYTK 324
              YT 
Sbjct: 309 TMIYTH 314


>gi|327470621|gb|EGF16077.1| phage integrase family integrase/recombinase [Streptococcus
           sanguinis SK330]
          Length = 328

 Score = 94.3 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 36/279 (12%), Positives = 87/279 (31%), Gaps = 15/279 (5%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES----RKHT 129
           L+  +  +      +  S   ++   + +         R +TT  +R+ +      RK +
Sbjct: 53  LLELFISAKRIEGCSEKSLKYYKMVIENMFVSL-KTSIRDLTTSDLRTYLARYQQERKSS 111

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
             +           F W   ++Y+  +P   + + K         + E ++  +    + 
Sbjct: 112 KVTIDNMRRIFSSFFGWLEDEDYILKSPVRRIHKIKTDKTIKETLSDEGLELLRDACDK- 170

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG-----FMKL 244
            +     + L  +G+R  +  R   + +            G    +   D       +  
Sbjct: 171 IRDLAMIDLLTSTGMRVGELVRLNREDINFYERECVVFGKGNSERIVYFDARTKIHLINY 230

Query: 245 LAMTPIGKETFF--INNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG 301
           L          F  +++   ++         +    KA +NK   H  R+  AT + D G
Sbjct: 231 LDSRQDDNPALFVSLSSPHDRLLIGGVETRLRQLGQKADLNKVHPHKFRRTLATRAIDKG 290

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
               ++    G   +D    Y    ++  +   + + I 
Sbjct: 291 MPIEQVQHLLGHVKIDTTMHYA-MVNQANVKNSHRKYIG 328


>gi|291515473|emb|CBK64683.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
          Length = 355

 Score = 94.3 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 83/232 (35%), Gaps = 12/232 (5%)

Query: 111 YRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170
           +R+      +     R  + +SA+ + ++ R   K   R + +  N    +E+ + +   
Sbjct: 121 FREYLLNAKQLRRPERPISRNSAVGYWSTFRGFLKILYRNKLIHSNVNDFLEKIEPEDVV 180

Query: 171 IRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-----QNNIFSIK 225
               + E++ +      +    + A  F   + LR SD      + +             
Sbjct: 181 KDYLSVEELYRLAEMPCKIPILKTASLFSCLTSLRISDILTLRWEEIVDFAAGGKCVYTV 240

Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284
           TQKT T   + + D  ++L+  +P      F    K+           K     AG+ K 
Sbjct: 241 TQKTKTEDIIPISDEALQLIGYSPEKTGLVF-KGLKRCWTQYP----MKEWIRTAGITKN 295

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335
            + H  R+  AT+ A AG     + +    K++   + Y K  D  +    N
Sbjct: 296 ITFHSYRRTFATLQAAAGTDIRTIQSIMAHKSITTTQRYMKVVDSNKRKASN 347


>gi|191165897|ref|ZP_03027734.1| site-specific recombinase, phage integrase family [Escherichia coli
           B7A]
 gi|190904028|gb|EDV63740.1| site-specific recombinase, phage integrase family [Escherichia coli
           B7A]
          Length = 426

 Score = 94.3 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 45/317 (14%), Positives = 97/317 (30%), Gaps = 64/317 (20%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK-ITTKHIRSGVESR-- 126
           T+K L  ++        +A  S  ++ +    I+   G+ +    I  + +    +    
Sbjct: 80  TIKELAEKFLALKE-TEVAKTSLNTYRAVIKNILSIIGEKNLASSINKEKLLEVRKELLT 138

Query: 127 --------------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
                           +  +   ++T++  +F++ V   Y+A NP   +   K       
Sbjct: 139 GYQIPKSNYIVTQPGRSAVTVNNYMTNLNAVFQFGVDNGYLADNPFKGISPLKESRTIPD 198

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK----- 225
           P ++E+  +         Q +  +   +Y+G+R  + C  G + +   N    I+     
Sbjct: 199 PLSREEFIRLIDAC-RNQQAKNLWCVSVYTGVRPGELCALGWEDIDLKNGTMMIRRNLAK 257

Query: 226 --------TQKTGTIITV--ELPDGFMKLLAMTPIGKETFF------------------- 256
                      T  +I +     D     + +T + KE                      
Sbjct: 258 DRFTVPKTQAGTNRVIHLIKPAIDALRSQMTLTRLSKEHIIDVHLREYGRTEKHKCTFVF 317

Query: 257 -------INNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELM 308
                  + N             + A   +AG+ ++ ++  R   A  S  AGA    + 
Sbjct: 318 QPEVSARVKNYGDHFTVDSIRQMWDAAIKRAGLRHRKSYQSRHTYACWSLTAGANPAFIA 377

Query: 309 ATYGWKTVDQA-ETYTK 324
              G        + Y K
Sbjct: 378 NQMGHADAQMVFQVYGK 394


>gi|8118290|gb|AAF72980.1|AF255921_1 recombinase [Shigella flexneri]
 gi|152063|gb|AAA91585.1| recombinase [Plasmid RGN238]
          Length = 337

 Score = 94.3 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 42/306 (13%), Positives = 93/306 (30%), Gaps = 62/306 (20%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129
           ++ + R+   +   ++ +  ++  +    IR  G      + +  + + +      RK +
Sbjct: 16  VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75

Query: 130 PSSAIQFLTSMRVLFK--WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            S+  Q L ++   +         ++       + RP+         T +++ +   F  
Sbjct: 76  VSTHRQALAALLFFYGKVLCTDLPWLQ-----EIGRPRPSRRLPVVLTPDEVVRILGFL- 129

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
           EG   RL  + L  +G+R S+  +  V+     +    ++  K      + LP+     L
Sbjct: 130 EGEH-RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSL 188

Query: 246 AMTPIGKETFFINN---------------------------------------------D 260
                    +++ +                                              
Sbjct: 189 REQLSRARAWWLKDQAQGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVR 248

Query: 261 KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           +  M    F   FK    +AG+ K  + H +R   AT    +G     +    G   V  
Sbjct: 249 RHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVST 308

Query: 319 AETYTK 324
              YT 
Sbjct: 309 TMIYTH 314


>gi|260844019|ref|YP_003221797.1| putative integrase [Escherichia coli O103:H2 str. 12009]
 gi|257759166|dbj|BAI30663.1| putative integrase [Escherichia coli O103:H2 str. 12009]
          Length = 312

 Score = 94.3 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 49/301 (16%), Positives = 98/301 (32%), Gaps = 12/301 (3%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRK-SAHWGS 86
             G+RIR  +  +S  +      L          NS  ++P ++  LI  + K       
Sbjct: 6   RKGKRIRKKFKTKSDAVLYERWVLAQQHNNEWKGNSIDRRPLSV--LIDLWWKYHGQLMK 63

Query: 87  LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKW 146
              N+R+      + +           + T+ +R     +   PS+  + + ++  +F  
Sbjct: 64  SGHNTRLKLLRLSEAMDDPCVHKLNTTMLTE-LRVSRIEQGIQPSTINREIGALSAMFTA 122

Query: 147 AVRQEY-VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLR 205
            +   + +  NP   ++  K     +   +K +  Q     +E    RLA E LL +G R
Sbjct: 123 LISSGHFLNDNPVQGLKGMKVNEREMGYLSKSECVQLLDALAENPDERLAVEILLSTGAR 182

Query: 206 CSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN 265
             +      + + +   +    K     TV + +   +   +   G +  F   D     
Sbjct: 183 WGEVAALEQRRVLHCRITFSKTKNSKNRTVPITESLFE--KIKKRGGKLVFPTLD----- 235

Query: 266 ATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
            +      K  A      ++ H +R   A+     G     L    G   +     Y   
Sbjct: 236 YSLVRDVIKTVAPDVPDGQAVHALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIYAHL 295

Query: 326 A 326
           A
Sbjct: 296 A 296


>gi|229020983|ref|ZP_04177670.1| Prophage LambdaBa04, site-specific recombinase, phage integrase
           [Bacillus cereus AH1273]
 gi|229023655|ref|ZP_04180148.1| Prophage LambdaBa04, site-specific recombinase, phage integrase
           [Bacillus cereus AH1272]
 gi|228737691|gb|EEL88194.1| Prophage LambdaBa04, site-specific recombinase, phage integrase
           [Bacillus cereus AH1272]
 gi|228740336|gb|EEL90647.1| Prophage LambdaBa04, site-specific recombinase, phage integrase
           [Bacillus cereus AH1273]
          Length = 379

 Score = 94.3 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 49/306 (16%), Positives = 96/306 (31%), Gaps = 48/306 (15%)

Query: 84  WGSLAVNSRI-----SFESYFD----QIIRKSGDFDYRKITTKHIRSGVESRKHTP---S 131
           WG L    +      S+E         I+   G    + I    I+S     K       
Sbjct: 69  WGKLKPIRKAELKITSYEKDMSLVKLYILPTFGYKKIKSIKPVIIQSYYAELKEKGLSNG 128

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-GS 190
           +        R +FK AV  E +  N    V++P+ +   ++ W+ ++  +F  +  E   
Sbjct: 129 TISNIHRCFRCIFKHAVEWEILHDNIMNKVKKPREEQGEMKTWSSKECNRFLHYLKEKNK 188

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250
           +  + F   +Y+G+R  +      + +  +   I   K+       L     K  +    
Sbjct: 189 KYYIFFLLAIYTGMRRGELLALTWKDIDFDNKRILVNKSLVKTEEGLFKAATKTKSSNRS 248

Query: 251 GKETFFINNDKQKMN---ATQFSIW----------------------------FKAKATK 279
              + F+  + Q        +F  W                             K    K
Sbjct: 249 ISISSFVVTELQSYYAYKKKEFFRWGIHLNEEAYIFAGNTIHSPLHIDAPHRFLKDHYKK 308

Query: 280 AGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSR 337
           AGV +   H +R   AT+   AG     +    G  ++    + Y+       +  + + 
Sbjct: 309 AGVPRIRIHDLRHTHATLMLQAGEHPKIVQDRLGHSSIQMTLDKYSHITQ--NMQQQAAE 366

Query: 338 RISSVV 343
              +V+
Sbjct: 367 NFENVI 372


>gi|262202504|ref|YP_003273712.1| integrase family protein [Gordonia bronchialis DSM 43247]
 gi|262202581|ref|YP_003273789.1| integrase family protein [Gordonia bronchialis DSM 43247]
 gi|262204533|ref|YP_003275741.1| integrase family protein [Gordonia bronchialis DSM 43247]
 gi|262085851|gb|ACY21819.1| integrase family protein [Gordonia bronchialis DSM 43247]
 gi|262085928|gb|ACY21896.1| integrase family protein [Gordonia bronchialis DSM 43247]
 gi|262087880|gb|ACY23848.1| integrase family protein [Gordonia bronchialis DSM 43247]
          Length = 324

 Score = 94.3 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 37/255 (14%), Positives = 76/255 (29%), Gaps = 29/255 (11%)

Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC-------------LSVERPK 165
           +R     +  +  +  + L+S+  L+++   +  V  NP                V   +
Sbjct: 68  VRIEDGEQGLSARTIKRRLSSIAGLYEYLRIRGVVTANPVPRGLATRSPGRAVRGVPLIR 127

Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFS 223
                 R         F +      + R     +L  GLR  +    G+  L        
Sbjct: 128 APRTLPRVLDPAQADAFVASLRT-DRDRAMVAAMLLGGLRRCEVLGLGLNDLNPGERRVF 186

Query: 224 IKTQKTGTIITVEL--------PDGFMKLLAMTPIGKETFFINN---DKQKMNATQFSIW 272
           I   K G    V +         D   +           F +       Q ++A      
Sbjct: 187 IAEGKGGHQRIVPISTRFFTAVTDYLNRERPQDTATDRLFVVLKGPRRGQPLSAAGLDEI 246

Query: 273 FKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
                 +AG+   + H +R    T   +AG     + +  G ++++    Y   A+   L
Sbjct: 247 IAGARRRAGIEQLTCHQLRHTCFTRLREAGMALEAIQSQAGHRSIESTRIYLHLANDW-L 305

Query: 332 GIKNSRRISSVVDSD 346
             +  R + ++   +
Sbjct: 306 ASEYRRAMEAIDAQN 320


>gi|299144869|ref|ZP_07037937.1| integrase/recombinase, phage integrase family [Bacteroides sp.
           3_1_23]
 gi|298515360|gb|EFI39241.1| integrase/recombinase, phage integrase family [Bacteroides sp.
           3_1_23]
          Length = 330

 Score = 94.3 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/282 (12%), Positives = 93/282 (32%), Gaps = 21/282 (7%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129
           L+S +  +      +  +   + +  ++++          ITT  IR+ +    E  + +
Sbjct: 55  LLSSFISAKKIEGCSEKTLAYYRNTIERLLLTL-SIAICHITTSDIRAYLSDYQEEHQSS 113

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
             +           F W   ++Y+A +P   + + K  +      + E ++Q +   +  
Sbjct: 114 KVTMDNMRRIFSSFFAWLEDEDYIAKSPVRRIHKVKTDSLVKEVLSDEQLEQLRDSCT-N 172

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT----QKTGTIITVELPDG----F 241
            +     + L  +G+R  +  +   + +    F  +      K      V          
Sbjct: 173 KRDLALIDILSSTGIRVGELVKLNREDID---FHERQCVVFGKGNKERIVYFNARTKLHL 229

Query: 242 MKLLAMTPIGKETFFINND--KQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISA 298
            + L          F++      ++  +   +  +       + K   H  R+  AT++ 
Sbjct: 230 QQYLDERTDDNPALFVSLHLPHTRLTISGVEVRIRDLGKSLSMPKVHPHKFRRTLATMAI 289

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
           D G    ++    G   +D    Y    ++  + + + + + 
Sbjct: 290 DKGMPIEQVQRLLGHVRIDTTLHYA-IVNQNNVKLAHKKYLG 330


>gi|226363393|ref|YP_002781175.1| integrase [Rhodococcus opacus B4]
 gi|226241882|dbj|BAH52230.1| putative integrase [Rhodococcus opacus B4]
          Length = 368

 Score = 94.3 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 57/320 (17%), Positives = 105/320 (32%), Gaps = 29/320 (9%)

Query: 24  YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAH 83
            +R    +  R            + +A       R     P+    T+  +   + +   
Sbjct: 18  RYRTPERKSTRRRGFTSKRQAQDF-AATVEVEKMRGEYVPPKLGHITMGEVGPAWLERKE 76

Query: 84  WGSLAVNSRISFE-SYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI--QFLTSM 140
              L  ++  S E S+   +  + G      +    +   +     T  + +  +    +
Sbjct: 77  -SDLKPSAYRSLETSWRVHVKPRWGTVRLSDVDLDAVERWIADLNRTKGATVVIRAYGVL 135

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP-WTKEDMQQFKSFWSEGSQPRLAFEFL 199
             +   AV+ + +A NP   VE   RK    R   T +++        E    R     L
Sbjct: 136 AGILDSAVKGKRLARNPARGVENLPRKQRKPRVYLTHDEVAALADSAGE---KRALVLVL 192

Query: 200 LYSGLRCSDSCRAGVQHLQ---------------NNIFSIKTQKTGTIITVELPDGFMKL 244
            Y GLR  ++    V+HL                N    + T K+    +V +P   ++ 
Sbjct: 193 AYCGLRWGEAIGLRVRHLDLLRKRATVVENAVQVNMEMHVGTPKSHKSRSVPIPGFVVEE 252

Query: 245 LAMT---PIGKETFFINNDKQKMNAT-QFSIWFKAKATKAGVNK-SAHGVRKFSATISAD 299
           LA         +  F   D   +  +  F+ WF     K+GV + + H +R   A++S  
Sbjct: 253 LARQCEGKGRDDLVFPGRDGDYLKRSVSFTGWFTKAVEKSGVPRLTPHDLRHTCASLSIA 312

Query: 300 AGATAHELMATYGWKTVDQA 319
           AGA    L    G  +    
Sbjct: 313 AGANVKSLQRMLGHASAAMT 332


>gi|304320755|ref|YP_003854398.1| Phage integrase [Parvularcula bermudensis HTCC2503]
 gi|303299657|gb|ADM09256.1| Phage integrase [Parvularcula bermudensis HTCC2503]
          Length = 440

 Score = 94.3 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 53/351 (15%), Positives = 99/351 (28%), Gaps = 46/351 (13%)

Query: 21  IIYYFRKGHGRR--IRLPYPHESTFIPAYMSALTGSTPK---REYINSPRKKPTTLKWLI 75
           +I Y  +G  RR  I L                 G   +           ++  T++ L 
Sbjct: 42  LIQYRARGRSRRYSIGLHGVWTPETARREAKIRLGDVAQGDDPAAEREEERRAVTVRELC 101

Query: 76  SEYRKSAHWG---------SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
            +Y      G           A             II   G    + IT   + + ++  
Sbjct: 102 EQYIADMEAGLVLGKGGRPKKATTVATDVGRIRRHIIPLLGTRRIKDITKPDMNNLMKDI 161

Query: 127 --------------------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
                               +    +AI+ +  +  +F +A+    +  NP   +++P+ 
Sbjct: 162 IAGKTRVVMKTEKLRGKAIVRGGRGTAIRTMGLLGGIFSYAIEAGIIDQNPTHGLKKPRY 221

Query: 167 KTEGIRPWTKEDMQQFKSFWSE-------GSQPRLAFEFLLYSGLRCSDSCRAGVQ--HL 217
           +    R  ++ + +       E       G    +     L +G R  +          +
Sbjct: 222 RVRDRR-LSEAEYRTLGHILKEVQDDSHYGIHAEILRLIAL-TGCRRGEIIGLRWSEVDI 279

Query: 218 QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF-SIWFKAK 276
           + +   +K  K G  +          L A       TF      +      F   W K  
Sbjct: 280 EGSCLRLKDSKEGASVRPVGLPVIDYLEAARSKRNGTFVFPGQGEDNAVGNFPQSWKKLF 339

Query: 277 ATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           A     + + H +R   A+I+ D G T   + A  G         Y    D
Sbjct: 340 ADTPLWDVTPHVLRHSFASIANDLGFTEITIAALIGHAKGSVTSKYVHTLD 390


>gi|323970469|gb|EGB65730.1| phage integrase [Escherichia coli TA007]
          Length = 374

 Score = 94.3 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 47/274 (17%), Positives = 94/274 (34%), Gaps = 19/274 (6%)

Query: 65  RKKPTTLKWLISEYRKSAHWGS---LAVNSRIS---FESYFDQIIRKSGDFDYRKITTKH 118
           + +  TL   + +Y K+        L    R++        D+ + +    D      + 
Sbjct: 6   KIRKMTLNRALDKYLKTVSVHKKGHLQEVYRVNVIKRHPVADRYMDEITTVDIASYRDQR 65

Query: 119 IRSG--VESRKHTPSSAIQFLTSMRVLFKWA-VRQEYVAINPCLSVERPKRKTEGIRPWT 175
           +        R+ T ++    L  +  LF  A V      +NP   V +PK      R  T
Sbjct: 66  LAQINPRTGRQITGNTVRLELALLSSLFNIARVEWGTCRMNPVELVRKPKISNGRERRLT 125

Query: 176 KEDMQQF-KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTGTI 232
             + ++  + F  +  Q  + F   L + +R  +      +HL     +  +   K G  
Sbjct: 126 SGEERRLSRYFRDKNQQLYVIFHLALETAMRQGEILTLRWEHLDLQHGVAHLPETKNGLP 185

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRK 291
             V L       L + P       IN +     ++ F   ++       + N   H +R 
Sbjct: 186 RDVPLSRKARNYLQILPQQ-----INGNVFSYTSSGFKSAWRTALLDLKIENLHFHDLRH 240

Query: 292 FSATISADAG-ATAHELMATYGWKTVDQAETYTK 324
            + +   + G     E+ A  G ++++  + YT 
Sbjct: 241 EAISRFFELGTLNVIEVAAISGHRSLNMLKRYTH 274


>gi|194445766|ref|YP_002041997.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194404429|gb|ACF64651.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
          Length = 336

 Score = 94.3 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 46/321 (14%), Positives = 94/321 (29%), Gaps = 44/321 (13%)

Query: 29  HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLA 88
            G+RIR  +  +   + AY   +     ++ ++   +     L  LI +      W  L 
Sbjct: 21  KGKRIRKKFATKGEAL-AYEKYIASEMEEKPWLGEKQDNRR-LSELIEQ------WHDLY 72

Query: 89  VNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGVESR-------------KHTPSS 132
             +    +    +   I    GD    +IT+       E R                P +
Sbjct: 73  GRTLSDADRMMSKLKGICAGMGDPIAAQITSADFSQYREGRLKGEIPDVNGRLMPIQPQT 132

Query: 133 AIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
                 ++  +F    +   +   NP   +   K   + +     E+++    + SE S 
Sbjct: 133 VNHEQRNLSAVFGTLKKLGHWSLPNPLAGIPTFKVDEKMVSFLYPEEIKSLLQYLSESSS 192

Query: 192 P--RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP 249
               +  +  L +G R S++       +     + K  K G + ++ +       +    
Sbjct: 193 DSVLIITKICLATGARWSEAENLEGAQVTPYRITYKNTKNGRVRSIPISKELYDEIPK-- 250

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGV----NKSAHGVRKFSATISADAGATAH 305
                       +          F+    KAG+     +  H +R   A+     G    
Sbjct: 251 ---------KRGRLFTP--CRKTFERVVAKAGIELPDGQCTHVLRHTFASHFMMNGGNIL 299

Query: 306 ELMATYGWKTVDQAETYTKGA 326
            L    G   +     Y   A
Sbjct: 300 VLKEILGHSDIKMTMIYAHFA 320


>gi|126642664|ref|YP_001085648.1| site-specific tyrosine recombinase [Acinetobacter baumannii ATCC
           17978]
          Length = 233

 Score = 94.3 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/211 (18%), Positives = 73/211 (34%), Gaps = 21/211 (9%)

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG----- 189
           + LTS+R   KWA + +Y+ INP    +  ++          E + Q             
Sbjct: 3   RHLTSIRQFMKWAEQGKYLEINPTDDFKLKRQPRPLPGMIDIEMVNQILDQPMPEKPVDQ 62

Query: 190 ---SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-----ELPDGF 241
               + +   E L  SGLR ++     ++ +  N   ++    G    +     +  +  
Sbjct: 63  QLWLRDKAMLELLYSSGLRLAELQGLTIKDIDFNRQLVRITGKGNKTRIVPFGKKAKESL 122

Query: 242 MKLLAMTPIGKETF------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293
           +  L +  I K  F      FI+     +   Q     K +A +AGV  +   H +R   
Sbjct: 123 LNWLKIYNIWKGHFDQNASVFISQRGGALTPRQIEKRVKLQAQRAGVNVDLHPHLLRHCF 182

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324
           A+    +      +    G   +   + YT 
Sbjct: 183 ASHMLSSSGDLRSVQEMLGHSNLSTTQIYTH 213


>gi|254821280|ref|ZP_05226281.1| phage integrase family protein [Mycobacterium intracellulare ATCC
           13950]
          Length = 378

 Score = 94.3 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 54/341 (15%), Positives = 109/341 (31%), Gaps = 33/341 (9%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT-TLKW 73
           R R G+    +     +    P  + +        A            +  +    TL+ 
Sbjct: 24  RERSGRYSAAYIGPDAKLHHAPRTYAAESDAEGWLANERRKIDLGTWGAVERSDGITLRA 83

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQII-RKSGDFDYRKITTKHIRSGVESR-KHTPS 131
              ++        L   +R  +ES   ++I    G      +T   +R          P+
Sbjct: 84  YADKWIGQ---RQLRPRTRQHYESMLGRLILPDLGAAKIVTLTPAKVRVWHAELGAEHPT 140

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCL-SVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
                   +  +   AV+ E +  NPC         +   +   T  D+ +         
Sbjct: 141 RNAHAYALLHAICATAVQDEVLDANPCRIRAAMQTTRKRDVDVLTPADVDRLAGKMPP-- 198

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ---------------KTGTII-T 234
           + R +     + GLR  ++     + +  +  +++ +               KT   +  
Sbjct: 199 RLRASVILAAWCGLRWGETSELRRKDVSGDCATLRVRRAVTYRKGEFIVGQPKTAAGVRD 258

Query: 235 VELPDGFMKLLA-------MTPIGKETFFINNDKQKMNATQF-SIWFKAKATKAGVNKSA 286
           V +P     ++           +    F ++ +   M+   + + W KA+A+    N   
Sbjct: 259 VAVPPHIRPIIKEHLKNHVNRDLESLLFPVDAEGSHMHGDNYRTHWEKARASIGKPNLRV 318

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           H +R   A ++A +GAT  ELM   G  T   A  Y   A+
Sbjct: 319 HDLRHVGAVLAAQSGATTAELMHRLGHTTPQMALRYQHVAE 359


>gi|239904755|ref|YP_002951493.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
 gi|239794618|dbj|BAH73607.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
          Length = 411

 Score = 94.3 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 50/296 (16%), Positives = 98/296 (33%), Gaps = 31/296 (10%)

Query: 63  SPRKKPT---TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS--GDFDYRKITT- 116
           SP   P+   T   L   Y               S E+   ++       D     +T  
Sbjct: 113 SPAAAPSKGLTFGQLSMMYLDHLRVSGRTEKHIASLENLLKRMFFDILGKDTPVAGMTYL 172

Query: 117 ------KHIRSGVESRKHTPSS---AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167
                      GV  +   P S     ++   +  +F + +  E ++ +P    ++ K +
Sbjct: 173 KDIVPFIRQMQGVSQQTGKPRSQASVNRYCDYVDAIFNFGMEMELISKSPMKGRKKAKEQ 232

Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCS--DSCRAGVQHLQNNIFSIK 225
              ++    +D+++        S  R A E     G R    +      +H+  +  +++
Sbjct: 233 PRDVQI-GIDDLKRIMDHAE--SHIRWAMEVCFNLGTRPGPSELFALRWEHVDFDAGTVR 289

Query: 226 --TQKTGTIITVELPDG-FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
               KT T  TV + +   ++L  M    +  F +  + + +   + S  F     KAG+
Sbjct: 290 IYATKTKTFRTVPVTESFLIRLREMRDQSQSGFIVEYEGKPLTTIRRS--FNTACEKAGI 347

Query: 283 --NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE----TYTKGADRIRLG 332
             +   + +R   AT     GA    +    G  TV         Y +G     +G
Sbjct: 348 TVDVRMYDLRHLFATTMLANGADLAAVSKLMGHSTVKMTADVYYHYLEGEKEKAVG 403


>gi|297565613|ref|YP_003684585.1| integrase family protein [Meiothermus silvanus DSM 9946]
 gi|296850062|gb|ADH63077.1| integrase family protein [Meiothermus silvanus DSM 9946]
          Length = 387

 Score = 94.3 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 47/332 (14%), Positives = 100/332 (30%), Gaps = 51/332 (15%)

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITT---KHI 119
           P     TLK     +  S     +   +   ++   +   I   GD   +++      H+
Sbjct: 56  PDPDRITLKEFCERWLTSVE-HRVKPTTHYGYKVALEKHAIPILGDIAVQRLQPLHLTHL 114

Query: 120 RSGVESRKHTPSSAIQFL-----------TSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168
            + +  ++  P+   +              ++    + AVR   +  NP   V+ P+   
Sbjct: 115 YADLLKKRIHPNDPKRLKTLSPTTVRLVHRTLHAALEDAVRWGLLPWNPADRVKPPQAPR 174

Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKT 226
                WT E++ +F +  ++ S+    F   L +G+R  +        +        ++ 
Sbjct: 175 YTGEVWTPEEVWRFLAE-AQHSRLYALFFLALMTGMRRGELLGLKWADIDWQEGAIWVRQ 233

Query: 227 --QKTGTIITVELPDGFMKLLAMTPIGKET--------------------------FFIN 258
              K G+   V+ P  +     +                                  F  
Sbjct: 234 NLTKAGSKRVVQSPKTYRSSRPVDVSSDVLEVLQQHREQQEKDRLGIGDAWTDEGWVFTT 293

Query: 259 NDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD 317
           +    +  +     F A   +A V +   H +R    ++ A AG     +    G  +V 
Sbjct: 294 SVGTPIEPSNLRREFLAIIKRAKVKEIRFHDLRDTHVSLLALAGVDPKVVSERVGHASVA 353

Query: 318 -QAETYTK--GADRIRLGIKNSRRISSVVDSD 346
              +TY     A R +  +     +    D  
Sbjct: 354 FTQQTYQHLFRAQRKKAALAVGELLGPREDRP 385


>gi|320197761|gb|EFW72369.1| putative integrase [Escherichia coli EC4100B]
          Length = 426

 Score = 94.3 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 45/317 (14%), Positives = 97/317 (30%), Gaps = 64/317 (20%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK-ITTKHIRSGVESR-- 126
           T+K L  ++        +A  S  ++ +    I+   G+ +    I  + +    +    
Sbjct: 80  TIKELAEKFLALKE-TEVAKTSLNTYRAVIKNILSIIGEKNLASSINKEKLLEVRKELLT 138

Query: 127 --------------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
                           +  +   ++T++  +F++ V   Y+A NP   +   K       
Sbjct: 139 GYQIPKSNYIVTQPGRSAVTVNNYMTNLNAVFQFGVDNGYLADNPFKGISPLKESRTIPD 198

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK----- 225
           P ++E+  +         Q +  +   +Y+G+R  + C  G + +   N    I+     
Sbjct: 199 PLSREEFIRLIDAC-RNQQAKNLWCVSVYTGVRPGELCALGWEDIDLKNGTMMIRRNLAK 257

Query: 226 --------TQKTGTIITV--ELPDGFMKLLAMTPIGKETFF------------------- 256
                      T  +I +     D     + +T + KE                      
Sbjct: 258 DRFTVPKTQAGTNRVIHLIKPAIDALRSQMTLTRLSKEHIIDVHLREYGRTEKQKCTFVF 317

Query: 257 -------INNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELM 308
                  + N             + A   +AG+ ++ ++  R   A  S  AGA    + 
Sbjct: 318 QPEVSARVKNYGDHFTVDSIRQMWDAAIKRAGLRHRKSYQSRHTYACWSLTAGANPAFIA 377

Query: 309 ATYGWKTVDQA-ETYTK 324
              G        + Y K
Sbjct: 378 NQMGHADAQMVFQVYGK 394


>gi|309793340|ref|ZP_07687767.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 145-7]
 gi|308122927|gb|EFO60189.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 145-7]
          Length = 431

 Score = 94.3 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 45/317 (14%), Positives = 97/317 (30%), Gaps = 64/317 (20%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK-ITTKHIRSGVESR-- 126
           T+K L  ++        +A  S  ++ +    I+   G+ +    I  + +    +    
Sbjct: 85  TIKELAEKFLALKE-TEVAKTSLNTYRAVIKNILSIIGEKNLASSINKEKLLEVRKELLT 143

Query: 127 --------------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
                           +  +   ++T++  +F++ V   Y+A NP   +   K       
Sbjct: 144 GYQIPKSNYIVTQPGRSAVTVNNYMTNLNAVFQFGVDNGYLADNPFKGISPLKESRSIPD 203

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK----- 225
           P ++E+  +         Q +  +   +Y+G+R  + C  G + +   N    I+     
Sbjct: 204 PLSREEFIRLIDAC-RNQQAKNLWCVSVYTGVRPGELCALGWEDIDLKNGTMMIRRNLAK 262

Query: 226 --------TQKTGTIITV--ELPDGFMKLLAMTPIGKETFF------------------- 256
                      T  +I +     D     + +T + KE                      
Sbjct: 263 DRFTVPKTQAGTNRVIHLIKPAIDALRSQMTLTRLSKEHIIDVHLREYGRTEKQKCTFVF 322

Query: 257 -------INNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELM 308
                  + N             + A   +AG+ ++ ++  R   A  S  AGA    + 
Sbjct: 323 QPEVSARVKNYGDHFTVDSIRQMWDAAIKRAGLRHRKSYQSRHTYACWSLTAGANPAFIA 382

Query: 309 ATYGWKTVDQA-ETYTK 324
              G        + Y K
Sbjct: 383 NQMGHADAQMVFQVYGK 399


>gi|300819734|ref|ZP_07099923.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 107-1]
 gi|300527685|gb|EFK48747.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 107-1]
          Length = 431

 Score = 94.3 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 45/317 (14%), Positives = 98/317 (30%), Gaps = 64/317 (20%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK-ITTKHIRSGVESR-- 126
           T+K L  ++        +A+ S  ++ +    I+   G+ +    I  + +    +    
Sbjct: 85  TIKELAEKFLALKE-TEVAITSLNTYRAVIKNILSIIGEKNLASSINKEKLLEVRKELLT 143

Query: 127 --------------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
                           +  +   ++T++  +F++ V   Y+A NP   +   K       
Sbjct: 144 GYQIPKSNYIVTQPGRSAVTVNNYMTNLNAVFQFGVDNGYLADNPFKGISPLKESRTIPD 203

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK----- 225
           P ++E+  +         Q +  +   +Y+G+R  + C  G + +   N    I+     
Sbjct: 204 PLSREEFIRLIDAC-RNQQAKNLWCVSVYTGVRPGELCALGWEDIDLKNGTMMIRRNLAK 262

Query: 226 --------TQKTGTIITV--ELPDGFMKLLAMTPIGKETFF------------------- 256
                      T  +I +     D     + +T + KE                      
Sbjct: 263 DRFTVPKTQAGTNRVIHLIKPAIDALRSQMTLTRLSKEHIIDVHLREYGRTEKQKCTFVF 322

Query: 257 -------INNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELM 308
                  + N             + A   +AG+ ++ ++  R   A  S  AGA    + 
Sbjct: 323 QPEVSARVKNYGDHFTVDSIRQMWDAAIKRAGLRHRKSYQSRHTYACWSLTAGANPAFIA 382

Query: 309 ATYGWKTVDQA-ETYTK 324
              G        + Y K
Sbjct: 383 NQMGHADAQMVFQVYGK 399


>gi|253682989|ref|ZP_04863775.1| XerC/D family recombinase [Clostridium phage D-1873]
 gi|253560818|gb|EES90281.1| XerC/D family recombinase [Clostridium phage D-1873]
          Length = 317

 Score = 94.3 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 47/285 (16%), Positives = 101/285 (35%), Gaps = 26/285 (9%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES---- 125
           T+K+L ++Y+       L+  +  ++E           D  + +  T+     +      
Sbjct: 23  TMKYL-NKYKIDMSIRELSEKTIYNYEMDLYNWFTYILDKQFNQCITELNEDDIMEFLYF 81

Query: 126 ---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR--PWTKEDMQ 180
              + +      + + S+   +K+  ++  +  NP   ++RP++ T+ +     TK+ ++
Sbjct: 82  CKQQGNNSRRMKRRMASISAFYKFLRKKRIIKENPMEFIDRPRKDTDVVTQTFLTKDQVE 141

Query: 181 QFKSFWSEGSQPRLA--FEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVE 236
           Q K    +    +L       L +  R +       + +   N I     +K G I+ + 
Sbjct: 142 QIKRKLKDHGDIQLETYVLLSLSTMARVNAISNIKWEQIDFENRIIGDVLEKEGKIVDLY 201

Query: 237 LPDGFMKLLAMTP-------IGKETFFINNDKQKMN---ATQFSIWFKAKATKAGVN-KS 285
                 +LL           I  E  FI+   +  +    +  S W K      GV    
Sbjct: 202 FNKEVKELLLQLQSIRKENNIESEYVFISKYNKGYSNVNTSTLSKWTKKVGEMIGVPTLH 261

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAET-YTKGADRI 329
            H  R   AT+  +AG     + +    + +D  +  Y K   + 
Sbjct: 262 CHDWRHSGATLLKNAGMPIERVSSLLHHEGLDVTKKFYIKEDTQK 306


>gi|16760822|ref|NP_456439.1| integrase [Salmonella enterica subsp. enterica serovar Typhi str.
           CT18]
 gi|25301774|pir||AC0740 probable integrase STY2077 [imported] - Salmonella enterica subsp.
           enterica serovar Typhi (strain CT18)
 gi|16503119|emb|CAD05622.1| putative integrase [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 358

 Score = 94.3 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 42/278 (15%), Positives = 87/278 (31%), Gaps = 30/278 (10%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--K 127
           T+   I  Y+       ++ N+     +  + I  K G     +ITT+HI   ++     
Sbjct: 75  TMADWIERYKTILIRRKVSRNTYKIRVNQLETIKEKLGGVLLTEITTRHIAEFLDLWIEG 134

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----K 183
              + A    + +  +F+ A+ +  ++ NP      PK      R      ++ +    +
Sbjct: 135 GKNTMAGSMRSVLSDMFREAIVEGRISQNPVTPTRAPKIVVTRERL----KLKTYNCIRE 190

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
           +     +   LA +  L +G R  D        + ++   I+  KTG +I + L      
Sbjct: 191 AADQLPTWFPLAMDLALVTGQRREDITNMRFSEIYDDRLHIRQIKTGMMIAIPLSLSLPV 250

Query: 244 LLAMTPI--------GKETFFINNDKQKMN------ATQFSIWFKAKATKAGV-----NK 284
                           +  + I+   +K +          +  F A     G+       
Sbjct: 251 AGLRLGTVVEQCRLVSRGDYLISAGIRKNSPDGSIHPDGLTKKFVAARKLTGIQFSENPP 310

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           + H +R   A                 G  +    + Y
Sbjct: 311 TFHEIR-SLAGRLYKETCGEEFAQRLLGHTSEKTTKMY 347


>gi|325955709|ref|YP_004293183.1| integrase/recombinase [Lactobacillus acidophilus 30SC]
 gi|325334689|gb|ADZ08242.1| integrase/recombinase [Lactobacillus acidophilus 30SC]
          Length = 284

 Score = 94.3 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 45/269 (16%), Positives = 92/269 (34%), Gaps = 22/269 (8%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVESRKH--- 128
           LI E+ +       A  + + +E    +     +       ++    +   +E +     
Sbjct: 9   LIDEFIEDLRLQGRAEGTLLEYEMRLKEFAEFFQLKALALDQVKKSDLTEFMEQKLSNCL 68

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK-RKTEGIRPWTKEDMQQFKSFWS 187
             S+    L++ RV   WAV + Y++       + PK    + IR  + E++  FK +  
Sbjct: 69  KVSTIRGKLSTFRVFCLWAVNKNYLSEVIISPQDYPKNTNVKRIRRLSDENLTIFKHYID 128

Query: 188 -EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI----FSIKTQKTGTIITVELPDGFM 242
                 R AF  L+ SG R +++     + +          I+  K G+   + + D   
Sbjct: 129 TLQPNARAAFYLLIGSGCRVAEAANLKAEDVTLRGKSVYIDIRNAKWGSDRNIPIVDADA 188

Query: 243 -----KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATIS 297
                K      +     F      +++      +    A   G+N   H +R   A + 
Sbjct: 189 AKIVWKYRTEVEVDNRPLF------RLSKRTLQNYATNFAKSTGINFYCHLLRHTFAGLL 242

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGA 326
            + G     +    G K++     Y + A
Sbjct: 243 TEKGVPLTTVQYLLGHKSLGMTAHYAQSA 271


>gi|56410450|ref|YP_145824.1| integrase/recombinase [Geobacillus kaustophilus HTA426]
 gi|56378347|dbj|BAD74256.1| integrase/recombinase [Geobacillus kaustophilus HTA426]
          Length = 304

 Score = 94.3 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 43/290 (14%), Positives = 86/290 (29%), Gaps = 39/290 (13%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----KHT 129
           +++EY         + N+ IS+ +  +             +T   IR  ++      +  
Sbjct: 1   MLNEYVAYLQEKGASRNTIISYTNDLNIFFHDLHIRPDDYVTPADIRKWIQHMLNPEEGK 60

Query: 130 P---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP---WTKEDMQQFK 183
           P   S+  + L S+R  + WAV   Y+  NP   ++  K   E        T+E+ +   
Sbjct: 61  PLAISTINRRLNSLRSFYAWAVEHHYIEQNPMKDIQDLKTADEDHEKIMWLTEEEFEDLL 120

Query: 184 SF-------------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
                            +  + R     L Y+GLR  +     +  L   +  I+    G
Sbjct: 121 QRMRKKPVQSRGVDPEEKYRRDRAVVYLLTYAGLRVEELSNLKLTDLDLEMKRIRIVGKG 180

Query: 231 TII-TVEL-----------PDGFMKLLAMTP--IGKETFFINNDKQKMNATQFSIWFKAK 276
             + TV +            +   ++    P        F +    K +        ++ 
Sbjct: 181 MKVRTVPISNILLAELEDWLEFRAEMAKKKPHVAASPYVFYSQRSPKFSVRGIQRMIESY 240

Query: 277 ATKAGVNKSAHGVRKFSATISADA-GATAHELMATYGWKTVDQAETYTKG 325
           +       + H  R         A      ++    G   +     Y K 
Sbjct: 241 SLP-NKKLTPHMFRHTFCKWMLKATNNDIEKVRRLAGHSNIATTSRYLKD 289


>gi|159901727|ref|YP_001547973.1| integrase family protein [Herpetosiphon aurantiacus ATCC 23779]
 gi|159894766|gb|ABX07845.1| integrase family protein [Herpetosiphon aurantiacus ATCC 23779]
          Length = 326

 Score = 94.3 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 48/304 (15%), Positives = 95/304 (31%), Gaps = 46/304 (15%)

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD-----YRKITTKH 118
           P+ +   ++ LI  +  +     L   +R  + S   ++ R     +        +    
Sbjct: 2   PQPESEPIESLIDRWWTNPG-DDLTAATRTRYRSALRRLCRWFAAAERRSLLLADLHPIS 60

Query: 119 IRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE-GIRPWT 175
           +    E+ K T   S+    L+++R    W V Q Y+A NP   ++  KR T    +  +
Sbjct: 61  LAGYREALKQTDAASTVNTHLSAIRTWCVWLVDQGYLATNPAQRLKLVKRTTPSAPKALS 120

Query: 176 KEDMQQFKSFWSE---GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS----IKTQK 228
              +              +     + L+ +G+R S+        +Q    S    I+  K
Sbjct: 121 PAHVNALLRQAQFTRYPLRNTAILQVLIQTGMRISECAALCWHDIQYGERSGHALIRAGK 180

Query: 229 TGTIITVELP------------------DGFMKLLAMTPIGKE-----TFFINNDKQKMN 265
             T+ TV L                       K+    P  +E       + +  +  ++
Sbjct: 181 GNTVRTVPLNESARCALASYVAPLLGVQPSLHKVARAWPQRQEGDPRCPLWTSERQHALS 240

Query: 266 ATQFSIWFKAKATKAGVNK------SAHGVRKFSATI-SADAGATAHELMATYGWKTVDQ 318
             + S             K      + H +R   AT   A        L    G +++  
Sbjct: 241 LREMSHMIHQLVRDTSARKLLPASTTPHSLRHTFATRYLARHPHDLVGLARLLGHRSITT 300

Query: 319 AETY 322
            + Y
Sbjct: 301 TQIY 304


>gi|332169104|gb|AEE18359.1| integrase family protein [Krokinobacter diaphorus 4H-3-7-5]
          Length = 295

 Score = 94.3 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/263 (14%), Positives = 89/263 (33%), Gaps = 23/263 (8%)

Query: 85  GSLAVNSRISFESYFDQIIR----KSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFL 137
            + + ++ I++E    + +        + +   I    IRS + S      +  +  + +
Sbjct: 14  KNYSKHTVIAYEKDVLEFLAFVKITFDESNLVDIHYAQIRSWIVSLVDNDVSNRTVNRKI 73

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS-----QP 192
           +S++  +K+ ++   V  +P       K       P+++ ++        E       + 
Sbjct: 74  SSLKAYYKFLLKIGEVEASPLAKHTSLKTPKRLQIPFSEVEVGAVFDRLKEADDFATLRD 133

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM---- 247
            L  E L  +G+R ++     V  +     +IK   K      V +    +         
Sbjct: 134 LLIVELLYATGMRRAELVDLTVGSIDVVQKTIKIIGKRNKERIVPMLSSVVVTYDRYIAV 193

Query: 248 ----TPIGKETFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSAHGVRKFSATISADAG 301
                  G++   + N   K+ +T            T   +  S H +R   AT   + G
Sbjct: 194 RSSVASSGEDALLVTNKGAKIYSTLVYRIINRYFSETSDKLKTSPHILRHSFATHLLNQG 253

Query: 302 ATAHELMATYGWKTVDQAETYTK 324
           A  + +    G  ++   + YT 
Sbjct: 254 ADLNIVKELLGHASLASTQVYTH 276


>gi|330826868|ref|YP_004390171.1| integrase family protein [Alicycliphilus denitrificans K601]
 gi|329312240|gb|AEB86655.1| integrase family protein [Alicycliphilus denitrificans K601]
          Length = 331

 Score = 94.3 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 40/308 (12%), Positives = 90/308 (29%), Gaps = 34/308 (11%)

Query: 49  SALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD 108
            AL         +   +  P T+      +R    +    +  +      F+QI      
Sbjct: 8   QALLQGFFTDRMMRQRQASPHTISSYRDSFRLLLRFAQRRIGVQPQ-RLTFEQI------ 60

Query: 109 FDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWA-----VRQEYVAINPCLSVER 163
                +    +     +R  + +S    LT++R  F++A          +     +  +R
Sbjct: 61  --DASLVAAFLEDLQSARGISAASRNLRLTAIRSFFRYAAFELPTHAAQIQRVLAIPSKR 118

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN 219
             R   G     +E++             G +        + +GLR S+         + 
Sbjct: 119 CTRAQIGF--LAREEIDALLHAPDLQTRAGRRDHALMLLAVQTGLRLSELTALRRDDTEL 176

Query: 220 NIF-SIKTQKTGTIITV-ELPDG----FMKLLAMTPIGKETFFINNDKQKMNATQFSIWF 273
            +   ++    G    V  L          LL      ++  F +    +++A       
Sbjct: 177 GVGAHVRVIGKGRKERVTPLTKATAQALRALLREIDAEQDLVFCSARGTRLSADAVQHLV 236

Query: 274 KAKATKAGVNK--------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
                +A  +         + H +R  +A     AG     +    G ++++  + Y   
Sbjct: 237 SKHVARAAQSCPSLACKHVTPHVLRHSAAMELLQAGVDRTVIAMWLGHESIETTQIYLDA 296

Query: 326 ADRIRLGI 333
             +I+   
Sbjct: 297 NLQIKQAA 304


>gi|281491988|ref|YP_003353968.1| phage integrase [Lactococcus lactis subsp. lactis KF147]
 gi|281375697|gb|ADA65201.1| Phage protein, integrase [Lactococcus lactis subsp. lactis KF147]
          Length = 359

 Score = 94.3 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 41/338 (12%), Positives = 108/338 (31%), Gaps = 28/338 (8%)

Query: 13  KERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR-KKPTTL 71
             + ++G   Y F+   G++       E +       A       +E I++P  K   T 
Sbjct: 5   AYKKKNGTTAYKFKAYIGKKNGKSQYAEKSGFKTKADARAALHNIQEEIDNPTPKSAMTF 64

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
           K L  E+               +  ++   ++   G       T   +++          
Sbjct: 65  KELYDEWLLVYEKEVQNSTYYKTTRAFEKHVLPVIGSTKLSDFTPMELQNFRNDLSEKLK 124

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCL-----SVERPKRKTEGIRPWTKEDMQQFKSFW 186
            A +    +R +F  A    Y+  NP L      +++   + +       ++++ F +  
Sbjct: 125 FARKLFGMVRKVFNHAALLSYIQANPALPVTSQGIKKKVEEKKDFY--DTDELRDFMALV 182

Query: 187 SEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
            + +  +    F  L ++G+R  +      +  + +   I    + + +  E+       
Sbjct: 183 EKTNDIKKIALFRILAFTGIRKGELLALEWKDYRKSTLDINKAISHSPVGYEILPPKANS 242

Query: 245 LAMTPIGKET----------------FFINNDKQKMNATQFSIWFKAKATKAGV-NKSAH 287
             +  + ++T                 F + +   ++ ++   W      +  +     H
Sbjct: 243 NRLLSLDEKTCKILDELHQTYPESTRIFESENGGMLSPSKPRKWLLEITKEKEIEPIRIH 302

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTK 324
             R   A++  ++G +  ++    G   +      YT 
Sbjct: 303 AFRHTHASLLFESGMSLKQVQYRLGHADLKTTMNIYTH 340


>gi|239907872|ref|YP_002954613.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
 gi|239797738|dbj|BAH76727.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
          Length = 374

 Score = 94.3 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 52/356 (14%), Positives = 103/356 (28%), Gaps = 54/356 (15%)

Query: 16  TRHGKIIYYFRKGHGRRIRLPYPHEST---FIPAYMSALTGST--------PKREYINSP 64
            R G+ + ++    G+R    +           A+  A++ +         P  + I+SP
Sbjct: 5   DRDGRWMVFYHDETGKRRDKSFGRGEEAYAQAEAFNKAVSDAKKLCTALPLPPTDLISSP 64

Query: 65  RKKP-------------------TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK 105
              P                    T + L  +Y           N+        D     
Sbjct: 65  APAPVKMIEEITLPEKTIQSGQGMTFRELAGKYLAHLKVSGRTENNTKKLAKMIDNQFNP 124

Query: 106 S-GDFDYRKITTKH-------IRSGVESRKHTPSS---AIQFLTSMRVLFKWAVRQEYVA 154
             GD     +T                 +++ P S     ++   +  +F + V      
Sbjct: 125 IIGDRVVNSMTYIDDMVPFIQFFQETNGKQNRPRSQPTVNRYGDYVNAIFNFGVTTGLTT 184

Query: 155 INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD--SCRA 212
           +NP    ++ + K   ++  T +D+++           R A E     G R  +      
Sbjct: 185 VNPMKGRKKSREKPRDVQ-LTVDDVKRIMDHAEP--HVRWAMEVCFSLGTRPGESELLAL 241

Query: 213 GVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET-FFINNDKQKMNATQF 269
              H+     I  I   KT T   V +    +  +       ++ + I    Q +   + 
Sbjct: 242 KWDHIDFDKGIAKIYASKTRTYRVVPISPTLLGKMKEVKTESQSGYVIEWRGQPIGMIRK 301

Query: 270 SIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETY 322
              F+    +AG+      + +R   AT     GA    +    G   +      Y
Sbjct: 302 G--FRRACERAGITYPVRMYDLRHLFATTMLSKGADLAAVSKLLGHSMISTTTSHY 355


>gi|229492422|ref|ZP_04386226.1| site-specific recombinase, phage integrase family protein
           [Rhodococcus erythropolis SK121]
 gi|229320651|gb|EEN86468.1| site-specific recombinase, phage integrase family protein
           [Rhodococcus erythropolis SK121]
          Length = 611

 Score = 94.3 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 51/331 (15%), Positives = 104/331 (31%), Gaps = 38/331 (11%)

Query: 25  FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP---TTLKWLISEYRKS 81
           F +G G R   P+P          +A +   P+  +  +    P    T++  + +   S
Sbjct: 180 FHRGQGPR---PHP------RKRWAARS--VPEIGWDRAEECAPVMVATMRRYLDQIGIS 228

Query: 82  AHWGSLA--VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
               S+     +   F  +           D  +   +  ++ + +R     +     T+
Sbjct: 229 LRVSSVDCIETTLRQFAGHLATTSDVVCVADIDRTHIEAYKTWLAARPGYRKNTNLSKTT 288

Query: 140 MRVLFKW--AVRQEYVAIN----PCLSV----ERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
           + +      A  Q  +  +    P  +     +RP +     R        +F +     
Sbjct: 289 IGMRMGHLSAFYQRIIEWDYPDIPARAPVYSSDRPIKDKPLPRFLDDGAAAKFLTAARNL 348

Query: 190 SQP--RLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDGFMK 243
                RLA E L  +G+R  +     +  +          I   K      V L      
Sbjct: 349 PDEFGRLAIEMLSRTGMRKGELLDLTIDSVVQIGSAYWLRIPVGKLHNDRYVPLHPQLKT 408

Query: 244 LL-----AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATIS 297
           ++                  +  + +  T+     ++ A  AG+     H +R   AT +
Sbjct: 409 MIDTWLEHRPDWQDSPLLFTDRGRPIPGTRIDKAVQSAAAAAGIGHVHPHQLRHTLATQA 468

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADR 328
            + G +   + A  G KT++    Y + ADR
Sbjct: 469 INRGMSLEAIAALLGHKTMEMTMVYARIADR 499


>gi|85813740|emb|CAJ65897.1| shufflon-specific recombinase [Salmonella enterica subsp. enterica
           serovar Typhimurium]
          Length = 308

 Score = 94.3 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 44/281 (15%), Positives = 91/281 (32%), Gaps = 25/281 (8%)

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI------IRKSGDFDYRKI 114
           + SPR +  +L   + +Y K+               +   +       + +    D    
Sbjct: 1   MPSPRIRKMSLSRALDKYLKTVSVHKKGHQQEFYRSNVIKRYPIALRNMDEITTVDIATY 60

Query: 115 TTKHIRSGVESRKHTPSSAIQF---LTSMRVLFKWA-VRQEYVAINPCLSVERPKRKTEG 170
               + + +  R   P +       L  +  LF  A V       NP   V +PK  +  
Sbjct: 61  RDVRL-AEINPRTGKPITGNTVRLELALLSSLFNIARVEWGTCRTNPVELVRKPKVSSGR 119

Query: 171 IRPWTKEDMQQFKSFWSE-GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQ 227
            R  T  + ++   ++ E      + F   L + +R  +      +H+     +  +   
Sbjct: 120 DRRLTSSEERRLSRYFREKNLMLYVIFHLALETAMRQGEILALRWEHIDLRHGVAHLPET 179

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM--NATQFSIWFKAKATKAGV-NK 284
           K G    V L       L M P       +N         A+ F   ++    +  + + 
Sbjct: 180 KNGHSRDVPLSRRARNFLQMMP-------VNLHGNVFDYTASGFKNAWRIATQRLRIEDL 232

Query: 285 SAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTK 324
             H +R  + +   + G     E+ A  G ++++  + YT 
Sbjct: 233 HFHDLRHEAISRFFELGSLNVMEIAAISGHRSMNMLKRYTH 273


>gi|328542282|ref|YP_004302391.1| Integrase family protein [Polymorphum gilvum SL003B-26A1]
 gi|326412031|gb|ADZ69094.1| Integrase family protein [Polymorphum gilvum SL003B-26A1]
          Length = 376

 Score = 94.3 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 51/314 (16%), Positives = 102/314 (32%), Gaps = 42/314 (13%)

Query: 52  TGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY 111
           +G                TL+ +I  +RK   +   A +++ +  S+     +  G +  
Sbjct: 46  SGIRKGEVKNVVRTAATKTLQDVIDRFRKEV-FIHRAESTKRAEGSFLAYWEKALGSYAL 104

Query: 112 RKITTKHIRSGV---------------ESRKHTPSSA---------IQFLTSMRVLFKWA 147
             IT   +   +               ++    P +A           +  ++ VLFK+A
Sbjct: 105 AYITADMVSEKMAELAAAGDGRRKADEDAEADKPKAAPKPKSRKTLKHYRDTLAVLFKYA 164

Query: 148 VRQEYVAINPCLSVERP-KRKTEGIRPWTKEDMQQFKSFWSEGSQPRL--AFEFLLYSGL 204
           ++  + A +P   V R  K + E  R  + E+ ++            L     F L +G 
Sbjct: 165 IQWGWTASSPLDGVNRITKIRNERTRYLSDEERKRLLDACKASDNEHLYPVVVFALSTGA 224

Query: 205 RCSDSCRAGVQHLQNNIFS--IKTQKTGTIITVELPDGFMKLL-----------AMTPIG 251
           R S+     +  L     +  ++  K G    V +      LL                 
Sbjct: 225 RKSEILGLTLDDLDLTRDTAILRDTKNGDTRAVPVVHHLRDLLEDQVETVNRFYDELEPP 284

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMAT 310
            +T ++   +           ++     A +N    H +R  +A+  A  GA+  E+   
Sbjct: 285 ADTRWLFPRRDGQEPIDIRKAWENARDAAKINDFRFHDLRHSTASYLAMNGASLVEIAEI 344

Query: 311 YGWKTVDQAETYTK 324
            G +T+     Y  
Sbjct: 345 LGHRTLQMVRRYAH 358


>gi|323181030|gb|EFZ66568.1| integrase domain protein [Escherichia coli 1180]
          Length = 233

 Score = 94.3 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/209 (16%), Positives = 68/209 (32%), Gaps = 8/209 (3%)

Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEY-VAINPCLSVERPKRKTEGIRPWTKE 177
           +R     +   PS+  + + ++  +F   +   + +  NP   ++  K     +   +K 
Sbjct: 17  LRVSRIEQGIQPSTINREIGALSAMFTALISSGHFLNDNPVQGLKGMKVNEREMGYLSKS 76

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237
           +  Q     +E    RLA E LL +G R  +      + + +   +    K     TV +
Sbjct: 77  ECVQLLDALAENPDERLAVEILLSTGARWGEVAALEQRRVLHCRITFSKTKNSKNRTVPI 136

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATIS 297
            +   +   +   G +  F   D      +      K  A      ++ H +R   A+  
Sbjct: 137 SESLFE--KIKKRGGKLVFPTLD-----YSLVRDVIKTVAPDVPDGQAVHALRHTFASHF 189

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGA 326
              G     L    G   +     Y   A
Sbjct: 190 MMNGGNILTLQKILGHAKIQTTMIYAHLA 218


>gi|152990726|ref|YP_001356448.1| phage integrase family site specific recombinase [Nitratiruptor sp.
           SB155-2]
 gi|151422587|dbj|BAF70091.1| site-specific recombinase, phage integrase family [Nitratiruptor
           sp. SB155-2]
          Length = 353

 Score = 94.3 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 37/285 (12%), Positives = 92/285 (32%), Gaps = 64/285 (22%)

Query: 74  LISEYRKSAHWGSLAVNSRISFE----SYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           +I ++  S+    L+  ++ ++     ++F  I + + D    +I               
Sbjct: 102 MIIDFLTSST-AGLSDATKKNYRIAMINFFRYIDKNNEDKHLYEIE-------------- 146

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----- 184
                  L +   L                   + K   +     +++++ +F       
Sbjct: 147 -------LKNWGGL-------------------KGKAGQKLPVFLSEDEITKFLHAIDTY 180

Query: 185 --FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITV--- 235
                  ++ R   + +LY+G+R S++    ++++       +  I  +     + +   
Sbjct: 181 PFRPDVAARNRAIIKMILYTGIRVSEAMNLEMKNIILQKDVYLLKITGKGNKARVVMIKA 240

Query: 236 -ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRK 291
            ++     + L      K   F N     +     S   +      G+ K    AH +R 
Sbjct: 241 QKIRKDLEEWLTKRNCEKGLLFCNKKGSPLTQAYISRMVEKILLSCGIRKEKNGAHMLRH 300

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
             AT+  +       +  + G  ++D +  YT   D+ +L    S
Sbjct: 301 TFATLLYNKSKDLVLVQESLGHASLDTSRIYTH-FDKEKLSKAAS 344


>gi|219848551|ref|YP_002462984.1| integrase domain-containing protein SAM domain-containing protein
           [Chloroflexus aggregans DSM 9485]
 gi|219542810|gb|ACL24548.1| integrase domain protein SAM domain protein [Chloroflexus aggregans
           DSM 9485]
          Length = 317

 Score = 94.3 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 42/280 (15%), Positives = 88/280 (31%), Gaps = 38/280 (13%)

Query: 86  SLAVNSRISFESYFD----QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMR 141
            L+ N+  S+          + ++        IT   I+  +  RK  P +  + + S+ 
Sbjct: 31  RLSENTITSYRCDLRTAGLALCQE-----LSTITAHDIQQFLAGRKEQPGTTNRRIASLN 85

Query: 142 VLFKWAVRQEYVAINPCLSV-ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP-RLAFEFL 199
             F+WA  + YV  NP   +  R   +        + +++      +   QP RL F  L
Sbjct: 86  RFFRWAKERGYVTHNPVEQIGGRLPTEHRPQPIANEHELRALDQAIAAAPQPYRLIFTLL 145

Query: 200 LYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDGFM-----------KL 244
              G+R  +     +  +       +  ++  K+G+   + L    M           + 
Sbjct: 146 REIGIRTDEVLNLNLGDVILEPGREMLLVRDSKSGSKRMIALTPDAMPRSLRGLRHWVRE 205

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV----------NKSAHGVRKFSA 294
           +   P      F ++   + +       + A    A +            + H +R  +A
Sbjct: 206 MDHLPPDTP-LFRSSRGTRASYDTLHRRWVAVCRAARLIDVVDGREQPRYTLHHLRHTAA 264

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIK 334
           T    A      +    G +       YT+         +
Sbjct: 265 TKLV-AFYPEQVVRRILGHRDPRSTRRYTELVRNRHHAAE 303


>gi|325848894|ref|ZP_08170404.1| site-specific recombinase, phage integrase family [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
 gi|325480538|gb|EGC83600.1| site-specific recombinase, phage integrase family [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
          Length = 353

 Score = 94.3 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 42/247 (17%), Positives = 82/247 (33%), Gaps = 24/247 (9%)

Query: 101 QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
            I+   G    ++IT +  +    S K        F  + R++  +A++  Y   NP  +
Sbjct: 87  HILPVFGQTKIQEITVQDCQKFALSLKDYVKGKEYFGYAKRII-DFAIKMNYTKKNPFNN 145

Query: 161 VERP--KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218
           V  P  K+  + I   T  ++     ++         F  + Y+GLR  +        + 
Sbjct: 146 VILPEFKKGKKQINFLTIVEVNTLLDYYKNNQYWYTLFRLMCYTGLRRGEILALTWDDID 205

Query: 219 NNIFSIKTQKT-----------------GTIITVELPDGFMKLLAMTPIGKET--FFINN 259
               ++   KT                  +I T++L D  +  L    I  +    F N 
Sbjct: 206 FKNKTLTVNKTLSIGEYKKIVLSSPKTESSIRTIDLDDKTILELQKLKIQSKYKLIFPNK 265

Query: 260 DKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
             +    +  +        +  + K   H +R   A++   +GA+   +    G   V  
Sbjct: 266 KGKYSRLSNIADKLNKAIKETNIKKIRVHDLRHTHASLLFASGASIKYVQTRLGHADVKT 325

Query: 319 A-ETYTK 324
               YT 
Sbjct: 326 TLNIYTH 332


>gi|215486887|ref|YP_002329318.1| predicted integrase [Escherichia coli O127:H6 str. E2348/69]
 gi|291282843|ref|YP_003499661.1| integrase [Escherichia coli O55:H7 str. CB9615]
 gi|215264959|emb|CAS09345.1| predicted integrase [Escherichia coli O127:H6 str. E2348/69]
 gi|290762716|gb|ADD56677.1| integrase [Escherichia coli O55:H7 str. CB9615]
          Length = 324

 Score = 94.3 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 49/301 (16%), Positives = 98/301 (32%), Gaps = 12/301 (3%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRK-SAHWGS 86
             G+RIR  +  +S  +      L          NS  ++P ++  LI  + K       
Sbjct: 19  RKGKRIRKKFKTKSDAVLYERWVLAQQHNNEWKGNSIDRRPLSV--LIDLWWKYHGQLMK 76

Query: 87  LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKW 146
              N+R+      + +           + T+ +R     +   PS+  + + ++  +F  
Sbjct: 77  SGHNTRLKLLRLSEAMDDPCVHKLNTTMLTE-LRVSRIEQGIQPSTINREIGALSAMFTA 135

Query: 147 AVRQEY-VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLR 205
            +   + +  NP   ++  K     +   +K +  Q     +E    RLA E LL +G R
Sbjct: 136 LISSGHFLNDNPVQGLKGMKVNEREMGYLSKSECVQLLDALAENPDERLAVEILLSTGAR 195

Query: 206 CSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN 265
             +      + + +   +    K     TV + +   +   +   G +  F   D   + 
Sbjct: 196 WGEVAALEQRRVLHCRITFSKTKNSKNRTVPISESLFE--KIKKRGGKLVFPTLD-YPLV 252

Query: 266 ATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
                   K  A      ++ H +R   A+     G     L    G   +     Y   
Sbjct: 253 RD----VIKTVAPDVPDGQAVHALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIYAHL 308

Query: 326 A 326
           A
Sbjct: 309 A 309


>gi|312115313|ref|YP_004012909.1| integrase family protein [Rhodomicrobium vannielii ATCC 17100]
 gi|311220442|gb|ADP71810.1| integrase family protein [Rhodomicrobium vannielii ATCC 17100]
          Length = 334

 Score = 94.3 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 44/319 (13%), Positives = 91/319 (28%), Gaps = 46/319 (14%)

Query: 61  INSPRKKPTTLKW--LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--DYRKIT 115
           +  P   P +     LI  Y          + N+  ++ +   ++ R   +    +    
Sbjct: 1   MGRPPSAPASAADEPLIDAYLAMMRAERGASANTVAAYAADLREMSRFLAERGETFAACA 60

Query: 116 TKHIRSGVESRKHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
              + +    R       +SA + L+ ++    + V ++    +P   ++  K +     
Sbjct: 61  RADLEAFFSDRAEAGLLANSAARKLSCLKRFMLFLVAEKMRDDDPARLIDGVKARRVLPM 120

Query: 173 PWTKEDMQQFKSFW--------SEGSQPRLAFEFL------LYSGLRCSDSCRAGVQHLQ 218
             T  ++                + S  R A            +GLR S+          
Sbjct: 121 TLTIAEVDLLLDAAHQAAAFGDPQTSSGRRALRLACLLELLYATGLRVSELVGLPRAAFL 180

Query: 219 NNIFSIKT-QKTGTIITVELPDGFMKLLAM-----------------TPIGKETFFINND 260
            +   +    K G    + L      +L                          +   + 
Sbjct: 181 GDRKMLTVKGKGGRERIIPLNAKARTVLDCWLDALEAAARADGKAGGAGASASKWLFPSW 240

Query: 261 K--QKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATISADAGATAHELMATYGWKT 315
                +   +F+   KA   + G++    S H +R   AT   D G     L    G   
Sbjct: 241 GEDGHLTRQKFAQDLKALGARLGIDAERLSPHVLRHAFATHLLDRGVDLRVLQTLLGHAD 300

Query: 316 VDQAETYTKG-ADRIRLGI 333
           +   + YT    DR+R  +
Sbjct: 301 ISTTQIYTHVMEDRLRQTV 319


>gi|331683085|ref|ZP_08383686.1| putative lambdoid prophage Qin defective integrase [Escherichia
           coli H299]
 gi|331079300|gb|EGI50497.1| putative lambdoid prophage Qin defective integrase [Escherichia
           coli H299]
          Length = 426

 Score = 94.3 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 45/317 (14%), Positives = 97/317 (30%), Gaps = 64/317 (20%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK-ITTKHIRSGVESR-- 126
           T+K L  ++        +A  S  ++ +    I+   G+ +    I  + +    +    
Sbjct: 80  TIKELAEKFLALKE-TEVAKTSLNTYRAVIKNILSIIGEKNLASSINKEKLLEVRKELLT 138

Query: 127 --------------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
                           +  +   ++T++  +F++ V   Y+A NP   +   K       
Sbjct: 139 GYQIPKSNYIVTQPGRSAVTVNNYMTNLNAVFQFGVDNGYLADNPFKGISPLKESRTIPD 198

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK----- 225
           P ++E+  +         Q +  +   +Y+G+R  + C  G + +   N    I+     
Sbjct: 199 PLSREEFIRLIDAC-RNQQAKNLWCVSVYTGVRPGELCALGWEDIDLKNGTMMIRRNLAK 257

Query: 226 --------TQKTGTIITV--ELPDGFMKLLAMTPIGKETFF------------------- 256
                      T  +I +     D     + +T + KE                      
Sbjct: 258 DRFTVPKTQAGTNRVIHLIKPAIDALRSQMTLTRLSKEHIIDVYLREYGRTEKHKCTFVF 317

Query: 257 -------INNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELM 308
                  + N             + A   +AG+ ++ ++  R   A  S  AGA    + 
Sbjct: 318 QPEVSARVKNYGDHFTVDSIRQMWDAAIKRAGLRHRKSYQSRHTYACWSLTAGANPAFIA 377

Query: 309 ATYGWKTVDQA-ETYTK 324
              G        + Y K
Sbjct: 378 NQMGHADAQMVFQVYGK 394


>gi|291551251|emb|CBL27513.1| Site-specific recombinase XerD [Ruminococcus torques L2-14]
          Length = 409

 Score = 94.3 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 51/347 (14%), Positives = 99/347 (28%), Gaps = 76/347 (21%)

Query: 47  YMSALTGSTPKREYINSPR-------KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF 99
           Y   L     K + I   +        + TT+  L   +        L  N+  +++  +
Sbjct: 40  YARTLDDLREKEKRIQKDKCDGIKTEARYTTIDELFDLWANMKR--GLKNNTFENYKYMY 97

Query: 100 DQIIRK-SGDFDYRKITTKHIRSG----VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA 154
           +  +R   G      +    I+      V+ R   PS+     T +  + + AV  +++ 
Sbjct: 98  NTFVRPVIGSKRISTLKKSDIKKYYNYLVDERNLKPSTIDNIHTVLHQVLQIAVDDDFIR 157

Query: 155 INPCLSV--ERPKR---KTEGIRPWTKEDMQQFKSF---WSEGSQPRLAFEFLLYSGLRC 206
            NP  +V  E  K    ++E  R  TK + + F +F             F  ++ +GLR 
Sbjct: 158 NNPSDNVLRELKKAHCFQSEKRRALTKHEQELFLNFMKTHPVYEHWYPVFAVMIGTGLRV 217

Query: 207 SDSCRAGVQHLQNN------------------------IFSIKTQKT-GTIITVELPDGF 241
            +        +                            F++ T KT  ++  V +    
Sbjct: 218 GEVTGLRWCDIDMESGMIDVNHTLVYYDHRTEGSKSGCYFNVNTTKTLASMRQVPMLGFV 277

Query: 242 MKLLAMTPIGKET---------------FFINNDKQKMNATQFSIWFKAKATKAG----- 281
            +        +E                 FIN   Q  +    +   +            
Sbjct: 278 REAFEQEKQKQEDLGLHCEVTIDGYTDFIFINRFGQAQHQATLNKAIRRIIRDCNDEQFL 337

Query: 282 ---------VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
                     + S H +R    T   +AG     +    G   +   
Sbjct: 338 HSDEPDVLLPHFSCHSLRHTFTTRMCEAGVNIKVIQDALGHSDISTT 384


>gi|145593868|ref|YP_001158165.1| phage integrase family protein [Salinispora tropica CNB-440]
 gi|145303205|gb|ABP53787.1| phage integrase family protein [Salinispora tropica CNB-440]
          Length = 325

 Score = 94.3 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 44/289 (15%), Positives = 93/289 (32%), Gaps = 37/289 (12%)

Query: 82  AHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHT---PSSAIQ 135
           A   + + ++  ++ +    ++  +   G      +T   IRS +  ++ T    S+  +
Sbjct: 30  AQVQNRSTHTVRAYVADVISLLDHAVRAGARTPADLTLAQIRSWLARQRTTGAARSTLAR 89

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK------------ 183
              + R    WA R   + ++    +  P+   E       +                  
Sbjct: 90  RSAAARTFSAWAHRDGRLPVDVAAGLASPRAHRELPAVLPVDQAAALLETAHAAPRGQPT 149

Query: 184 ------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE 236
                 +      + +L  E L  +G+R S++C   V  +      ++   K G   +V 
Sbjct: 150 DDVPPGAADPVRLRDQLLLELLYATGVRVSEACGLNVADVDPGRRVLRVFGKGGRERSVP 209

Query: 237 LPDGFMKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-S 285
                 + L                     +     ++N T          T AG+ + S
Sbjct: 210 YGVPAQRTLDAWLRHGRPRLVGAQSANALLLGARGGRLNPTTARGIVGRYTTAAGLPRTS 269

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGI 333
            HG+R  +AT   + GA    +    G  ++   + YT    +R+R   
Sbjct: 270 PHGLRHTAATHLLEGGADLRTVQELLGHSSLASTQIYTHVSVERLRSAY 318


>gi|57233840|ref|YP_182174.1| phage integrase family site specific recombinase [Dehalococcoides
           ethenogenes 195]
 gi|57224288|gb|AAW39345.1| site-specific recombinase, phage integrase family [Dehalococcoides
           ethenogenes 195]
          Length = 386

 Score = 94.3 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 42/305 (13%), Positives = 97/305 (31%), Gaps = 45/305 (14%)

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGV 123
           +   +T+   +  +       +L+  +   +       II   G+    ++  +H++   
Sbjct: 59  KPGKSTMYEYMQSWLNDYCKPNLSPRTVELYSYISTKHIIPTLGNIPIVELKPQHLQHLY 118

Query: 124 ESRKHTPSSAIQFLTSMRVLF----KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
              K +   + + +  + V+     K AV+   ++ N   +V+ PK +   ++   + DM
Sbjct: 119 AD-KQSFGLSNRTVQIIHVVLHKALKNAVKTGLLSRNIAEAVDAPKIQRHEMQVMNESDM 177

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--------------------N 219
           Q       E +     F   L++G+R ++        +                      
Sbjct: 178 QVLLEKAKE-TPYYALFYTSLFTGMRRAECLALRWSDIDLILCQVYVLRSMQYVQDADLG 236

Query: 220 NIFSIKTQKT-GTIITVELPD--------------GFMKLLAMTP-IGKETFFINNDKQK 263
              + K  KT  +   + L                   K L +      +  F + D   
Sbjct: 237 KRITFKEPKTSKSRRQIALSPSNVIILREHYQDQSELRKTLNLPGLTDSDLVFSHYDGSP 296

Query: 264 MNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ET 321
           +     +  +   A + G+N    H  R   A++    G     +    G  ++    +T
Sbjct: 297 LLPNSVTHAWIKLARRCGLNGIRLHDARHTHASLLLKQGVHPKIVQERLGHGSIQITLDT 356

Query: 322 YTKGA 326
           Y+  A
Sbjct: 357 YSHVA 361


>gi|149928222|ref|ZP_01916466.1| Tyrosine recombinase XerC [Limnobacter sp. MED105]
 gi|149823028|gb|EDM82269.1| Tyrosine recombinase XerC [Limnobacter sp. MED105]
          Length = 298

 Score = 94.3 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 43/272 (15%), Positives = 83/272 (30%), Gaps = 27/272 (9%)

Query: 74  LISEYRKSAHWGSLAVNSR----ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           LI  Y     +  L          + +     I    G      +  K I +   +    
Sbjct: 13  LIQRYL---DFLRLERRYSDHSVKAAQRDLSLIDTPPGQVTTTAL--KSILAQRHAAGAA 67

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE- 188
           P+S  +  +S R  FK+ +    V ++P L ++ PK      +    + +    +     
Sbjct: 68  PASLARLASSWRGFFKYLLNNGIVEVDPTLGLKTPKLTRSLPKAVGVDPLAALLAKPLPQ 127

Query: 189 ---GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK-- 243
               +Q  +  E L  +GLR S++     + L  +       K      V + D      
Sbjct: 128 EFRFAQAHVLIELLYCTGLRISEALTLQAEALNGSTELRVVGKGNKARIVPVVDALQARL 187

Query: 244 ----------LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRK 291
                     LL +      + F++     + A Q        A K G+  +   H +R 
Sbjct: 188 REFVEPRQIHLLKLGKGQGASLFVSAKGLALTARQAQRDIADHAAKCGLGQHLHPHMLRH 247

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYT 323
              +           +    G  ++   + YT
Sbjct: 248 SFGSHLLQGTQNLRAVQELLGHASIASTQVYT 279


>gi|329890948|ref|ZP_08269291.1| phage integrase family protein [Brevundimonas diminuta ATCC 11568]
 gi|328846249|gb|EGF95813.1| phage integrase family protein [Brevundimonas diminuta ATCC 11568]
          Length = 304

 Score = 94.3 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 52/294 (17%), Positives = 94/294 (31%), Gaps = 34/294 (11%)

Query: 70  TLKWLISEYRKS-AHWGSLAVNSRISF----ESYFDQIIRKSG----DFDYRKITTKHIR 120
           T +  ++ + +  AH   L+  +  ++      Y   + R  G      D   +T    R
Sbjct: 2   TSQDALAAWLEHLAHERRLSPRTLEAYGHIGRLYLAFLERHRGGPQSAADLGSVTAAEAR 61

Query: 121 SGVESRK--HTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLS-VERPKRKTEGIRPW 174
           + +  R+    P +A    Q L ++R    + + +      P L+ V  PK K    RP 
Sbjct: 62  AHLAERRSGDRPLNARSLSQTLAAIRGFHAF-LDRRLGVATPQLALVRGPKVKPSLPRPV 120

Query: 175 TKEDMQQFKSFWS--------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226
           +++  +               E ++ R     L   GLR S++                T
Sbjct: 121 SEDQAKGLLHEPEADPDMEPWEAARDRAVLTLLYGCGLRISEALSLKRSDAPLPESLRIT 180

Query: 227 QKTGTIITVELPDGFMKLLAM-------TPIGKETFFINNDKQKMNATQFSIWFKAKATK 279
            K      V +     +                +  F       ++A       +    +
Sbjct: 181 GKGDKTRMVPVLPEVREATQAYLALQPFVIDADQALFRARRGGPLSARHVQATVQRLRGR 240

Query: 280 AGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            G+  SA  H +R   AT    AGA    +    G  ++   + YT   D  RL
Sbjct: 241 LGLPASATPHALRHSFATHLLGAGADLRSIQELLGHASLSTTQKYT-QVDAARL 293


>gi|294677399|ref|YP_003578014.1| tyrosine recombinase XerD [Rhodobacter capsulatus SB 1003]
 gi|294476219|gb|ADE85607.1| tyrosine recombinase XerD [Rhodobacter capsulatus SB 1003]
          Length = 318

 Score = 94.3 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 35/196 (17%), Positives = 60/196 (30%), Gaps = 28/196 (14%)

Query: 157 PCLSVERPKRKTEGIRPWTKEDMQQFKSF-------WSEGSQPRLAFEFLLYSGLRCSDS 209
           P L +  P +     +  + E+++             +E  + R   E L  +G+R S+ 
Sbjct: 99  PTLQISGPGKAQRLPKTLSIEEVEALLEAGRDQGRSPAEQIRNRCLMELLYATGMRVSEL 158

Query: 210 CRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKLLAM-----------------TPIG 251
               V   + N    +   K      V L     + LA                   P  
Sbjct: 159 VGLPVAAARGNPAMLMVRGKGDKERMVPLSAPAREALAAWLATRDAAEEAARIARRLPPS 218

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELM 308
           +  F  +  +  +    F    K  A  AG++    + H +R   AT     GA    + 
Sbjct: 219 RFLFPSSGKEGHLTRQGFHALLKDIALAAGLDPARVTPHVLRHAFATHLLQGGADLRVIQ 278

Query: 309 ATYGWKTVDQAETYTK 324
              G   +   E YT 
Sbjct: 279 TLLGHADLSTTEIYTH 294


>gi|256828693|ref|YP_003157421.1| integrase family protein [Desulfomicrobium baculatum DSM 4028]
 gi|256577869|gb|ACU89005.1| integrase family protein [Desulfomicrobium baculatum DSM 4028]
          Length = 687

 Score = 94.3 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 50/359 (13%), Positives = 99/359 (27%), Gaps = 89/359 (24%)

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK 113
               +E    P +    L  +   Y K       A ++  +FE    + I   GD   + 
Sbjct: 304 QAQTQEASMIPSEDNPCLSTIWESYLKE---RKPAPSTIKNFEGAVRRFIELVGDLPVKA 360

Query: 114 ITTKHIRSGVESRKHTP-----------------------------------SSAIQFLT 138
           +T  H R   ++    P                                   +   ++L 
Sbjct: 361 VTKSHFRQYKDALLKFPVRLPHSVRKKSIQQVVAFVEKERQKGTAFELLNSKTINNKYLG 420

Query: 139 SMRVLFKWAVRQEYVAINPCLSV------ERPKRKTEGIRPWTKEDMQ------------ 180
           +++ +   AV   ++  NP   +      ++         P+T+E++             
Sbjct: 421 ALKAILAHAVDNGFIDDNPANQIRVTHDADKHGDNEPATLPYTEEELNVLFSSSFFVPGQ 480

Query: 181 --QFKSFWS-EGSQPRLAF-EFLLYSGLRCSDSCRAGVQHLQ------------NNIFSI 224
             +FK     +            L++G R  +  +  V  +             +     
Sbjct: 481 ECKFKKRMKRDAVLDYRWLPIVALFTGARLEEIGQLDVADVMEEDGVKFLFIHADQSTER 540

Query: 225 KTQKTGTIITVELPDGFMKL------LAMTPIGKETFFIN------NDKQKMNATQFSIW 272
           + +   +   V +    ++L         +  G    F          K K     FS W
Sbjct: 541 RLKNKSSRRKVPIHPRLVELGFLEFVKLRSKQGAIKLFSTLKEMGGARKDKRT-DAFSKW 599

Query: 273 FKAKATKAGVN----KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           ++      GV     K+ H  R  S     +AG       A +G      +  Y +  D
Sbjct: 600 WRRYTEAIGVKTGKQKTFHSFRHTSKRALRNAGVDPSLTDAIHGHTNKSISAHYGRDKD 658


>gi|328545835|ref|YP_004305944.1| Site-specific recombinase, phage integrase family protein
           [Polymorphum gilvum SL003B-26A1]
 gi|326415575|gb|ADZ72638.1| Site-specific recombinase, phage integrase family protein
           [Polymorphum gilvum SL003B-26A1]
          Length = 316

 Score = 94.3 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/279 (13%), Positives = 87/279 (31%), Gaps = 30/279 (10%)

Query: 82  AHWGSLAVNSRISFESYFDQIIRKS--------GDFDYRKITTKHIRSGVESRKHTPS-- 131
                L+  + +++E    Q +R          G  + R +     R+ +  R+   +  
Sbjct: 28  GDERRLSDKTLVAYERDVRQFLRFLTDHLGGTPGMAELRDLRPADFRAFLARRRRAGAQS 87

Query: 132 -SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF-------K 183
            S  + L  +R    +  R+  V      ++  P++     +P +  D +         +
Sbjct: 88  RSLARGLAGIRSFLGFLERRGEVNAAAAGAIRPPRQPRSLPKPVSAADARAIVSGELAME 147

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRA-GVQHLQNNIFSIK-TQKTGTIITVELPDGF 241
           +     ++       L   GLR +++    G    +    ++    K G    V +    
Sbjct: 148 AEPWIEARNAAVLTLLYGCGLRLAEALSLTGRTAPRRGTKTLTIRGKGGKERIVPVLPVV 207

Query: 242 MKLLAM-------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKF 292
            + +         TP      F+      +N     +  +   +   +    + H +R  
Sbjct: 208 CEAVDAYLKLCPYTPEPDGPLFLGARGGPLNPRLVQLAMQKLRSALALPDSATPHALRHS 267

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            AT     G     +    G  ++   + YT   D  RL
Sbjct: 268 FATHLLAGGGDLRTIQELLGHASLSTTQIYT-EVDTARL 305


>gi|325696149|gb|EGD38040.1| phage integrase family integrase/recombinase [Streptococcus
           sanguinis SK160]
 gi|328946727|gb|EGG40865.1| phage integrase family integrase/recombinase [Streptococcus
           sanguinis SK1087]
          Length = 328

 Score = 94.3 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 37/279 (13%), Positives = 88/279 (31%), Gaps = 15/279 (5%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----SRKHT 129
           L+  +  +      +  S   ++   + ++        R +TT  +R+ +      RK +
Sbjct: 53  LLELFISAKRIEGCSEKSLKYYKIVIENMLTSL-KTAIRDLTTGDLRTYLAHYQQERKSS 111

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
             +           F W   ++Y+  +P   + + K        ++ E ++  +    E 
Sbjct: 112 KVTIDNMRRIFSSFFGWLEDEDYILKSPVRRIHKIKTDKTIKETFSDEGLELLRDACDE- 170

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG-----FMKL 244
            +     + L  +G+R  +  R   + +            G    +   D       +  
Sbjct: 171 IRDLAMIDLLASTGMRVGELVRLNREDINFYERECLVFGKGNSERIVYFDARTKIHLINY 230

Query: 245 LAMTPIGKETFFINND--KQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG 301
           L          F++      ++         +    KA +NK   H  R+  AT + D G
Sbjct: 231 LDNRQDDNPALFVSLSFPYNRLLIGGVETRLRQIGEKADLNKVHPHKFRRTLATRAIDKG 290

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
               ++    G   +D    Y    ++  +   + + I 
Sbjct: 291 MPIEQVQHLLGHVKIDTTMHYA-MVNQANVKNSHRKYIG 328


>gi|229092729|ref|ZP_04223874.1| Phage integrase [Bacillus cereus Rock3-42]
 gi|228690655|gb|EEL44433.1| Phage integrase [Bacillus cereus Rock3-42]
          Length = 387

 Score = 94.3 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 46/306 (15%), Positives = 106/306 (34%), Gaps = 43/306 (14%)

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNS----RISFESYFDQIIRKSGDFDYRKITTKHIRSG 122
            PT+LK+ + ++ K     ++  N+    + + E +     +     D + +  ++  + 
Sbjct: 65  VPTSLKYFLEDWLKVYKENTVRKNTFILHKRNIEKHIIPYFKNINLKDLKPMMYQNFINH 124

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV---ERPKRKTEGIRPWTKEDM 179
           +  + ++  +      +M      AV  + +  NPC  V    + ++K EG++    ED+
Sbjct: 125 LTDQGYSKGTVKIIHRTMNNAMCKAVSLKKIGTNPCDDVVISNKNQKKEEGLKYMRTEDI 184

Query: 180 QQFKSFWSEGSQPRLAF-EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT--------- 229
            +F     + +     F + L+ +G+R  ++       +     +I   KT         
Sbjct: 185 PRFLKASYQYNYIYYIFFKTLINTGMRKGEAAALQWSDIDFKEQTINITKTLDFTAKDDE 244

Query: 230 ---------GTIITVELPDGFMKLL---------------AMTPIGKETFFINNDKQKMN 265
                     +  T+ +P    K L                      +  F   D   + 
Sbjct: 245 ELFGDTKTFSSRRTIMIPAPLAKDLLNHKKWQNENKLVLQESYKHDLDLVFTKTDGNFLP 304

Query: 266 ATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYT 323
            +     F     K  +     H +R   A +  ++GA    +    G K+++     Y+
Sbjct: 305 KSTLFNAFSRILKKVNIPSLDIHSLRHTHAVLLLESGANLKYIQERLGHKSIEMTSNVYS 364

Query: 324 KGADRI 329
             +D+I
Sbjct: 365 HISDKI 370


>gi|307693102|ref|ZP_07635339.1| integrase family protein [Ruminococcaceae bacterium D16]
          Length = 377

 Score = 94.3 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 60/357 (16%), Positives = 120/357 (33%), Gaps = 54/357 (15%)

Query: 17  RHGKIIYYF-----RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT-- 69
           RH   +YY      R  +G+RI+          P   +A  G          P+  P   
Sbjct: 16  RH---LYYVSMDLGRDENGKRIKQYRTF-----PTLAAARNGLKEFHATREQPQFVPAQE 67

Query: 70  -TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRK 127
            TL   +  +  S    + A  +  +++   D  I    GD    K++ K ++    + +
Sbjct: 68  MTLSQWLEYWMDSIVRPNRAETTVYAYQKIIDNHIDPALGDTPLTKLSAKQVQEYYTTTQ 127

Query: 128 HTPSSAIQFLT----SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
              + +   +      +    + AVRQE + ++P   VE P+ + +    +   +++Q  
Sbjct: 128 REANLSSNTMRRHHDLLSSALRSAVRQEMIPVSPMNRVEPPRPRPKETSFYDNLELKQLY 187

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI---------------FSIKTQK 228
               +G    L  +     G+R  + C     ++                      K  K
Sbjct: 188 QLI-QGKPLELPVKLAGSLGMRREEICGLKWDNVDLQRRLVIIREARTAYGANIVQKETK 246

Query: 229 TGTII-TVELPDGF----------MKLLAMTPIGKE----TFFINNDKQKMNATQFSIWF 273
               + T+ L D             + L               +++ ++  +    S+ F
Sbjct: 247 NRASVRTLYLADELCLLLEQEQSRQEALRCQDPDNFNPEGYVVLDHKQRPYSPNALSLAF 306

Query: 274 KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADR 328
                +  + + + HG+R   ATI++  GA+  ++    G  T       YT   DR
Sbjct: 307 TRFVRRNNLPRLTFHGLRHTFATIASCQGASLFDIGKALGHSTPSTTGRIYTHLVDR 363


>gi|77454861|ref|YP_345729.1| putative transposase [Rhodococcus erythropolis PR4]
 gi|77019861|dbj|BAE46237.1| putative transposase [Rhodococcus erythropolis PR4]
          Length = 611

 Score = 94.3 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 51/331 (15%), Positives = 104/331 (31%), Gaps = 38/331 (11%)

Query: 25  FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP---TTLKWLISEYRKS 81
           F +G G R   P+P          +A +   P+  +  +    P    T++  + +   S
Sbjct: 180 FHRGQGPR---PHP------RKRWAARS--VPEIGWDRAEECAPVMVATMRRYLDQIGIS 228

Query: 82  AHWGSLA--VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
               S+     +   F  +           D  +   +  ++ + +R     +     T+
Sbjct: 229 LRVSSVDCIETTLRQFAGHLATTSDVVCVADIDRTHIEAYKTWLAARPGYRKNTNLSKTT 288

Query: 140 MRVLFKW--AVRQEYVAIN----PCLSV----ERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
           + +      A  Q  +  +    P  +     +RP +     R        +F +     
Sbjct: 289 IGMRMGHLSAFYQRIIEWDYPDIPARAPVYSSDRPIKDKPLPRFLDDGAAAKFLTAARNL 348

Query: 190 SQP--RLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDGFMK 243
                RLA E L  +G+R  +     +  +          I   K      V L      
Sbjct: 349 PDEFGRLAIEMLSRTGMRKGELLDLTIDSVVQIGSAYWLRIPVGKLHNDRYVPLHPQLKT 408

Query: 244 LL-----AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATIS 297
           ++                  +  + +  T+     ++ A  AG+     H +R   AT +
Sbjct: 409 MIDTWLEHRPDWQDSPLLFTDRGRPIPGTRIDKAVQSAAAAAGIGHVHPHQLRHTLATQA 468

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADR 328
            + G +   + A  G KT++    Y + ADR
Sbjct: 469 INRGMSLEAIAALLGHKTMEMTMVYARIADR 499


>gi|327441062|dbj|BAK17427.1| site-specific recombinase XerD [Solibacillus silvestris StLB046]
          Length = 299

 Score = 94.3 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/264 (12%), Positives = 89/264 (33%), Gaps = 25/264 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV-------ESRKHTPSSAIQFL 137
            + ++++   + S  ++          +KI                + +K   +S  + +
Sbjct: 20  KNFSLHTVREYTSDLEEFFAFLHAEGIQKIAEVEYIHARLYVTKLYDEQKAR-TSISRKI 78

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KSFWSEGSQPR 193
           +S+R  F++  R++ +   P  S+  PK++      + +E++++     +       +  
Sbjct: 79  SSIRSFFRFLNREQNIDDAPFRSLYHPKKEERLPSFFYEEELKELFEKNEGDDPIQIRNM 138

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVEL----PDGFMKLLA-- 246
              E L  +G+R S+     +  +  +   ++    G     +       D  ++ +   
Sbjct: 139 ALLELLYATGMRVSECVSLELTDIDFHYNIVRVMGKGRKERIIPFGQYAHDALIRYIKQV 198

Query: 247 ----MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADA 300
               M     +  F+N    ++               A ++     H +R   AT   + 
Sbjct: 199 RPTLMKKENHQKVFVNMRGGELTTRGVRYILSEMIDNASMHTKIYPHMLRHTFATHLLNN 258

Query: 301 GATAHELMATYGWKTVDQAETYTK 324
           GA    +    G   +   + YT 
Sbjct: 259 GADMRTVQELLGHANLSSTQIYTH 282


>gi|298245229|ref|ZP_06969035.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
 gi|297552710|gb|EFH86575.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
          Length = 368

 Score = 94.3 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 56/367 (15%), Positives = 108/367 (29%), Gaps = 83/367 (22%)

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFES---YFDQIIRKSG------- 107
           R       + P ++   + ++  S +   LA  ++I +      F       G       
Sbjct: 5   RAIKRRDERAPISVSDAVKDFLASPNVKRLAHTTQIGYTLELVVFANWCDTHGLAQNPTS 64

Query: 108 ----------DFDYRKITTKHIRSGVESRK--HTPSSAIQ----------FLTSMRVLFK 145
                          +I  + +   ++  K  H PS A +              ++    
Sbjct: 65  KEWHVVSGKGQISLDQINDRVMMLYLDDFKQTHRPSRADREEISTYTLSRVSRVIKTFLN 124

Query: 146 WAVRQE----YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS------QPRLA 195
           W V  E    YV       +++PK +   I  +T E ++   +            + R  
Sbjct: 125 WCVLDEQYSQYVLSISIQRIKKPKVEEVIIETFTIEQIEALFAACDREESEHLQVRDRAI 184

Query: 196 FEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTI--------------------- 232
              LL SG+R  + C   + ++   +    I+    G                       
Sbjct: 185 LACLLDSGIRAHELCTLTIGNVCLDSKDAHIRVFGKGGKWGEVGLGEQARRAIQKYVRMF 244

Query: 233 ----ITVELPDGFMKL-------LAMTPIGKETFFINNDKQKMNATQFSIWFKA---KAT 278
               I  E+ +   +L       +    +GK   F+N   + +  +            A 
Sbjct: 245 REPTIEYEIREQLQRLPARQAQQIKRQALGKALVFVNRSGKALTISGLYRMVDRLGSWAG 304

Query: 279 KAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338
             GV  S H  R   A +    G   ++L       +V   E Y K   +     +  + 
Sbjct: 305 IEGVRCSPHTFRHTMAAMFIRNGGNIYQLSKLLRHASVSTTEEYLKSLRQS----EARKG 360

Query: 339 ISSVVDS 345
             SV+D+
Sbjct: 361 AKSVLDN 367


>gi|325679665|ref|ZP_08159240.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
 gi|324108695|gb|EGC02936.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
          Length = 362

 Score = 94.3 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 50/332 (15%), Positives = 106/332 (31%), Gaps = 40/332 (12%)

Query: 22  IYYFRKG-----HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76
            +  R        GRRI   +  +S     Y + +       E+  +      T + L++
Sbjct: 13  RWECRISMGKDESGRRIFRSFYGKSREEAEYKAMIAQGQADEEFAVT----EMTFRELVT 68

Query: 77  EYRKSAHWGSLAVNSRISF-ESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSS 132
           E+        +  ++  ++       +I   G+     +  K I + +E +     +   
Sbjct: 69  EWL-HVTASRIKESTAANYAMKAEKHLIPAFGEIKCCLLKAKDIYAFIERKLKEGLSVRY 127

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-GSQ 191
               +   + +F++A  +EY   N    +  PK+    I    KE   + + +  +  S 
Sbjct: 128 LSDIMVLFKSVFRYA-SREYRIRNVLDGIVLPKKNKPEIAVMNKEQQLRLEKYLDKRPSV 186

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII------------------ 233
             +     +Y GLR  + C    + +     ++   KT   +                  
Sbjct: 187 TSMGISISMYMGLRIGEVCALQWKDIDLEKRTLTVSKTIQRVQCRTGARHTKLIITEPKS 246

Query: 234 -----TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAH 287
                T+ +PD  + +L       E + ++  K+ +        F      A +     H
Sbjct: 247 ESSKRTIPIPDCLLPMLRQFKDNGEVYVVSGRKKPVEPRTMQYRFAKILHNANLPSFHYH 306

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQA 319
             R   AT   + G     L    G  +V+  
Sbjct: 307 STRHLFATRCVELGFDVKTLSEILGHSSVEVT 338


>gi|323527812|ref|YP_004229965.1| integrase family protein [Burkholderia sp. CCGE1001]
 gi|323384814|gb|ADX56905.1| integrase family protein [Burkholderia sp. CCGE1001]
          Length = 358

 Score = 94.3 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 53/343 (15%), Positives = 102/343 (29%), Gaps = 45/343 (13%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPA---YMSALTGSTPKREYINSPRKKPTT 70
           +R+R     Y      G  +       S    A   Y         +      PR    T
Sbjct: 5   KRSRSPNWYYRLTPPGGGSVVQGSTGTSNKEQAQELYDRLKVELWNQARLGVKPRY---T 61

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS-GVESRKHT 129
               +  Y          ++S  + +++   + R         I    + +  +  RK T
Sbjct: 62  WNDAVIRYVTDRE----GLSSLETSKTHLRWLDRHLSGVALAGIDRDRVDAIALAKRKET 117

Query: 130 P-----------------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
                              +  + +  +R +   AV   ++   P    +R K   + +R
Sbjct: 118 RVVRTKRGIVDTGQTVSLGTVRRVIGVLRAVLNAAVEWGWLDRAPVA--KRSKVVPKRVR 175

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----NNIFSIKTQK 228
             T  + ++              F   L +GLR S+        +              K
Sbjct: 176 WLTPAEAERLLPELPGHLAEMARF--SLETGLRRSNVTGLQWSQVDLVRRIAWIHPDQAK 233

Query: 229 TGTIITVELPDGFMKLLAMTPIGK------ETFFINNDKQKMNATQFSIWFKAKATKAGV 282
               ITV L +  + +L      K      ++ F+   K +      +  ++    +AG+
Sbjct: 234 AKRAITVPLSETAVAVLRRQIAKKRAPEYVDSVFV--YKGRPVYQTVTAAWRKALKRAGI 291

Query: 283 -NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            N   H +R   A+     G   H L    GW+T++  + Y  
Sbjct: 292 CNFRWHDLRHTWASWHVQRGTPLHVLKELGGWETLEMVQRYAH 334


>gi|262378264|ref|ZP_06071421.1| conserved hypothetical protein [Acinetobacter radioresistens SH164]
 gi|262299549|gb|EEY87461.1| conserved hypothetical protein [Acinetobacter radioresistens SH164]
          Length = 339

 Score = 94.3 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 47/282 (16%), Positives = 89/282 (31%), Gaps = 20/282 (7%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD 110
           L+     ++ I    K     + L ++Y +       +  +        D+I     D  
Sbjct: 42  LSELRSGKKAIEQGEKPKYLFRDLCAKYYQEHGRHMRSARTINFKIKNLDRIAPNLADKS 101

Query: 111 YRKITTKHIRSGVESRKH--TPSSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRK 167
                   I     +RK     ++          +F +A+++   +  N   SV  P ++
Sbjct: 102 IYDFKPADIAEWRNNRKKEVKVATLRNEHAIYSAVFTYAMKELFLIESNVWHSVTMPGKE 161

Query: 168 TEGIRPWTKEDMQQFKSF--WSEGSQPRL-------AFEFLLYSGLRCSDSCRAGVQHLQ 218
               +  T+ED         W   + P +       AF F L + +R  +      Q ++
Sbjct: 162 KSRSQRITEEDQALMLKSLSWDGTTTPEISRHYVAWAFLFALETAMRQGEILAMKRQDIK 221

Query: 219 NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKAT 278
                +   K G    V L     +LLA+ P        N     ++  +F   +     
Sbjct: 222 EGFVHLPVTKNGDSRNVPLSKEAKRLLALLPK------TNKQLVPLDKDRFCATWMRAKK 275

Query: 279 KAGVNK-SAHGVRKFSATISADAGA-TAHELMATYGWKTVDQ 318
           +AG+   + H  R  + T            L    G KT+  
Sbjct: 276 RAGLPHINFHDSRHEAITRMVKVRKLPVEVLAKITGHKTISM 317


>gi|241992512|gb|ACS73592.1| IntI1 [uncultured bacterium]
 gi|241992515|gb|ACS73594.1| IntI1 [uncultured bacterium]
 gi|241992526|gb|ACS73602.1| IntI1 [uncultured bacterium]
 gi|241992530|gb|ACS73605.1| IntI1 [uncultured bacterium]
 gi|241992537|gb|ACS73610.1| IntI1 [uncultured bacterium]
 gi|241992541|gb|ACS73613.1| IntI1 [uncultured bacterium]
 gi|241992546|gb|ACS73616.1| IntI1 [uncultured bacterium]
 gi|241992555|gb|ACS73622.1| IntI1 [uncultured bacterium]
 gi|241992568|gb|ACS73632.1| IntI1 [uncultured bacterium]
 gi|241992575|gb|ACS73637.1| IntI1 [uncultured bacterium]
 gi|241992618|gb|ACS73667.1| IntI1 [uncultured bacterium]
 gi|241992621|gb|ACS73669.1| IntI1 [uncultured bacterium]
 gi|241992633|gb|ACS73677.1| IntI1 [uncultured bacterium]
 gi|241992638|gb|ACS73681.1| IntI1 [uncultured bacterium]
 gi|241992641|gb|ACS73683.1| IntI1 [uncultured bacterium]
 gi|241992644|gb|ACS73685.1| IntI1 [uncultured bacterium]
          Length = 315

 Score = 94.3 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 42/306 (13%), Positives = 93/306 (30%), Gaps = 62/306 (20%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129
           ++ + R+   +   ++ +  ++  +    IR  G      + +  + + +      RK +
Sbjct: 16  VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75

Query: 130 PSSAIQFLTSMRVLFK--WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            S+  Q L ++   +         ++       + RP+         T +++ +   F  
Sbjct: 76  VSTHRQALAALLFFYGKVLCTDLPWLQ-----EIGRPRPSRRLPVVLTPDEVVRILGFL- 129

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
           EG   RL  + L  +G+R S+  +  V+     +    ++  K      + LP+     L
Sbjct: 130 EGEH-RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSL 188

Query: 246 AMTPIGKETFFINN---------------------------------------------D 260
                    +++ +                                              
Sbjct: 189 REQLSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVR 248

Query: 261 KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           +  M    F   FK    +AG+ K  + H +R   AT    +G     +    G   V  
Sbjct: 249 RHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVST 308

Query: 319 AETYTK 324
              YT 
Sbjct: 309 TMIYTH 314


>gi|218695140|ref|YP_002402807.1| putative defective integrase; Qin prophage [Escherichia coli 55989]
 gi|218351872|emb|CAU97595.1| putative defective integrase; Qin prophage [Escherichia coli 55989]
          Length = 431

 Score = 94.3 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 45/317 (14%), Positives = 97/317 (30%), Gaps = 64/317 (20%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK-ITTKHIRSGVESR-- 126
           T+K L  ++        +A  S  ++ +    I+   G+ +    I  + +    +    
Sbjct: 85  TIKELAEKFLALKE-TEVAKTSLNTYRAVIKNILSIIGEKNLASSINKEKLLEVRKELLT 143

Query: 127 --------------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
                           +  +   ++T++  +F++ V   Y+A NP   +   K       
Sbjct: 144 GYQIPKSNYIVTQPGRSAVTVNNYMTNLNAVFQFGVDNGYLADNPFKGISPLKESRTIPD 203

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK----- 225
           P ++E+  +         Q +  +   +Y+G+R  + C  G + +   N    I+     
Sbjct: 204 PLSREEFIRLIDAC-RNQQAKNLWCVSVYTGVRPGELCALGWEDIDLKNGTMMIRRNLAK 262

Query: 226 --------TQKTGTIITV--ELPDGFMKLLAMTPIGKETFF------------------- 256
                      T  +I +     D     + +T + KE                      
Sbjct: 263 DRFTVPKTQAGTNRVIHLIKPAIDALRSQMTLTRLSKEHIIDVHLREYGRTEKQKCTFVF 322

Query: 257 -------INNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELM 308
                  + N             + A   +AG+ ++ ++  R   A  S  AGA    + 
Sbjct: 323 QPEVSARVKNYGDHFTVDSIRQMWDAAIKRAGLRHRKSYQSRHTYACWSLTAGANPAFIA 382

Query: 309 ATYGWKTVDQA-ETYTK 324
              G        + Y K
Sbjct: 383 NQMGHADAQMVFQVYGK 399


>gi|168698263|ref|ZP_02730540.1| Phage integrase [Gemmata obscuriglobus UQM 2246]
          Length = 349

 Score = 94.3 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 49/310 (15%), Positives = 104/310 (33%), Gaps = 40/310 (12%)

Query: 59  EYINSPRKKPTTLKWLISEYRKS-AHWGSLAVN--SRISFESYFDQIIRKSGDF-----D 110
             +N+P ++  ++  L S+  ++ + W + + +  +R  +    +Q +  +G       +
Sbjct: 29  PTLNTPDQRLPSVNDLRSQLAEAVSAWLTRSPSVETRSGYARDLNQFMAHAGIAVRAWDE 88

Query: 111 YRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS--VERPK 165
              +   HI +  +       T ++  + L+ +R LF +     Y   NP  +  V  P 
Sbjct: 89  LPHVRPGHIAAWRDQLLAAGLTNAAISRKLSVVRSLFGYLRAYGYEGPNPADTAFVAAPP 148

Query: 166 RKTEG-IRPWTKEDMQQFK----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-- 218
              +G     T ED ++      +   EG + R     L ++G R  + CR  V   +  
Sbjct: 149 VPRDGKTVALTPEDCRRLLDATSAQTPEGVRDRALLAVLAFTGCRVGELCRLRVGDYKTS 208

Query: 219 -NNIFSIKTQKTGTIITVELPDGFMKLLAM-----------TPIGKETFFINNDKQ---- 262
             +       K G    V L     + L              P+ +         +    
Sbjct: 209 GGHKVLEIRGKGGKERRVPLHPEAFERLDAWLETAGLQGATGPLFRPVRTARGGGREGFR 268

Query: 263 --KMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
              ++     +       +  ++   + H  R  + T + + GA   +L    G      
Sbjct: 269 AAPLSRRAVQVLVARYVRRLQLDPHVTVHSFRVTALTTARERGADIVDLQDFAGHADPRT 328

Query: 319 AETYTKGADR 328
              Y +  DR
Sbjct: 329 TLGYIRNRDR 338


>gi|170020069|ref|YP_001725023.1| integrase family protein [Escherichia coli ATCC 8739]
 gi|169754997|gb|ACA77696.1| integrase family protein [Escherichia coli ATCC 8739]
          Length = 431

 Score = 94.3 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 45/317 (14%), Positives = 97/317 (30%), Gaps = 64/317 (20%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK-ITTKHIRSGVESR-- 126
           T+K L  ++        +A  S  ++ +    I+   G+ +    I  + +    +    
Sbjct: 85  TIKELAEKFLALKE-TEVAKTSLNTYRAVIKNILSIIGEKNLASSINKEKLLEVRKELLT 143

Query: 127 --------------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
                           +  +   ++T++  +F++ V   Y+A NP   +   K       
Sbjct: 144 GYQIPKSNYIVTQPGRSAVTVNNYMTNLNAVFQFGVDNGYLADNPFKGISPLKESRTIPD 203

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK----- 225
           P ++E+  +         Q +  +   +Y+G+R  + C  G + +   N    I+     
Sbjct: 204 PLSREEFIRLIDAC-RNQQAKNLWCVSVYTGVRPGELCALGWEDIDLKNGTMMIRRNLAK 262

Query: 226 --------TQKTGTIITV--ELPDGFMKLLAMTPIGKETFF------------------- 256
                      T  +I +     D     + +T + KE                      
Sbjct: 263 DRFTVPKTQAGTNRVIHLIKPAIDALRSQMTLTRLSKEHIIDVHLREYGRTEKQKCTFVF 322

Query: 257 -------INNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELM 308
                  + N             + A   +AG+ ++ ++  R   A  S  AGA    + 
Sbjct: 323 QPEVSARVKNYGDHFTVDSIRQMWDAAIKRAGLRHRKSYQSRHTYACWSLTAGANPAFIA 382

Query: 309 ATYGWKTVDQA-ETYTK 324
              G        + Y K
Sbjct: 383 NQMGHADAQMVFQVYGK 399


>gi|22536401|ref|NP_687252.1| phage integrase family site specific recombinase [Streptococcus
           agalactiae 2603V/R]
 gi|22533228|gb|AAM99124.1|AE014201_22 site-specific recombinase, phage integrase family [Streptococcus
           agalactiae 2603V/R]
          Length = 384

 Score = 94.3 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 59/361 (16%), Positives = 112/361 (31%), Gaps = 62/361 (17%)

Query: 10  FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMS--ALTGSTPKREYINSPRKK 67
           ++ K+  R   I   FR     +              Y +      ++ K E    P  K
Sbjct: 22  YMVKDSQRADHIKRGFRTRKEAK-------------DYEARLIYLKASGKLEEFIKPTHK 68

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYF--DQIIRKSGDFDYRKITTKHIRSGVES 125
             T   +  ++ +   +  +   +  S         I+   GD    KI+    ++ +  
Sbjct: 69  --TYNEIFEKWYQ--AYQDMVEPTTASRTLDMFRLHILPVMGDLPISKISPLDCQNFITD 124

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-PWTKEDMQQFKS 184
           +  T  +  Q  +    +F +A++ + +  NP   +  PKRK   I   WT +++Q+F +
Sbjct: 125 KAKTFKNIKQIKSYTGKVFDFAIKMKLLKHNPMAEIIMPKRKKTRIENYWTVQELQEFLA 184

Query: 185 --FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---------------NNIFSIKTQ 227
                E  +    F  L YSGLR  +        +                +     K  
Sbjct: 185 IVLQEEPYKHYALFRLLAYSGLRKGELYALKWADIDFQTETLSVDKSLGRLDGQAIEKGT 244

Query: 228 KTGTIIT-----------------VELPDGFMKLLAMTPIGKETFF--INNDKQ--KMNA 266
           K    +                  +   +     +A   I ++  F           ++A
Sbjct: 245 KNDFSVRKIKLDSETISILQEWKSISQKEKAQLAVAPLSIEQDFLFTYCTRSGSIEPLHA 304

Query: 267 TQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
              +        K G+ K S HG R   AT+  + G          G  +     +TY+ 
Sbjct: 305 DYINNVLSRIIRKHGLKKISPHGFRHTHATLMIEIGVDPVNTAKRLGHASSQMTLDTYSH 364

Query: 325 G 325
            
Sbjct: 365 S 365


>gi|295087392|emb|CBK68915.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A]
          Length = 382

 Score = 94.3 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 43/267 (16%), Positives = 90/267 (33%), Gaps = 27/267 (10%)

Query: 85  GSLAVNSRISFESYFDQIIR------KSGDFDYRKITTKHIRSGVESRKHTP----SSAI 134
             +A  +   +E+                D    +++ + I       K       ++A 
Sbjct: 103 TDMAPATVQRYETSLKHTRDFVWETYHKKDVLLDEVSRQFIEDYEFWLKTEKKCCHNTAT 162

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQ 191
           ++L + + + + A+ + ++  +P L + R              ++Q+  S        SQ
Sbjct: 163 KYLKNFKKIIRIALAKGWMKNDPFLEI-RFSLDKVEPDFLEDSEIQKLISKEIDIPRLSQ 221

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVELPDGFMKLLA 246
            R  F F  ++GL  SD      +H+  +           QKT  +  + L +  +K+L 
Sbjct: 222 VRDIFVFCCFTGLAFSDIHGLRKEHIVEDSNGVRWIRKGRQKTKIMCNIPLMEIPLKILE 281

Query: 247 MTPIGKETFFINNDK---QKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAG 301
                +   +          +   + + + K  A   G+ K+   H  R   AT +   G
Sbjct: 282 KYSTNE---YCKKHGVLFPVLCNQKMNAYLKELADICGIKKTLTTHVGRHTFATFALANG 338

Query: 302 ATAHELMATYGWKTVDQAETYTKGADR 328
            +   +    G   V     Y +  DR
Sbjct: 339 VSIESVAKMLGHTNVQMTRHYARVLDR 365


>gi|257870041|ref|ZP_05649694.1| phage integrase [Enterococcus gallinarum EG2]
 gi|257804205|gb|EEV33027.1| phage integrase [Enterococcus gallinarum EG2]
          Length = 383

 Score = 94.3 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 46/315 (14%), Positives = 100/315 (31%), Gaps = 49/315 (15%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132
           WL  +Y+ +    +L    +   + +   II   G     KIT  + ++ V         
Sbjct: 76  WL-EQYKNTVKASTLT-AQKFVLKKH---IIPHFGKIPINKITIPYCQAKVNHWFSYYKK 130

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE------GIRPWTKEDMQQFKSFW 186
               +     +F++A+    +  NP   V RPKR+ +          ++++ +  F    
Sbjct: 131 FNNLIMITSQIFQYAISVRLLTNNPMNGVIRPKRQMDIDQEDYAAPYYSQKQLITFLDKA 190

Query: 187 S--EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---------------NNI-FSIKTQK 228
                    L F  L ++GLR  +      + +                +      +T K
Sbjct: 191 KKQLPFSEFLMFRILAFTGLRKGELHALRWKDISFGRGTLSVKQTVATADGWKLIFQTPK 250

Query: 229 TGTIIT-VELPDGFMKLLAMTPIGK---------------ETFFINNDKQKMNATQFSIW 272
           T   +  + L D  +KLL    + +               +  F + + + +     +  
Sbjct: 251 TRKSVRELSLDDETLKLLKRWKLQQKELFFKLGIKHDNEEQLLFTSEENKVLYLDFLNHR 310

Query: 273 FKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIR 330
                    +   + HG R    ++  ++G    E+    G   +      Y    D+ R
Sbjct: 311 LTKILKDNNLEYMTVHGFRHTHCSLLLESGVPIKEVQERMGHTDIKTTMNVYAHVTDKKR 370

Query: 331 LGIKNSRRISSVVDS 345
              +   R +  + +
Sbjct: 371 --EETGNRFAQFMTN 383


>gi|325568652|ref|ZP_08144945.1| bacteriophage integrase [Enterococcus casseliflavus ATCC 12755]
 gi|325157690|gb|EGC69846.1| bacteriophage integrase [Enterococcus casseliflavus ATCC 12755]
          Length = 399

 Score = 94.3 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 46/323 (14%), Positives = 100/323 (30%), Gaps = 42/323 (13%)

Query: 50  ALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF 109
           AL     + +  +   +   T + + + + +       A    I   +    I+   G  
Sbjct: 46  ALARLQLESKEPDFITETTKTFEEVCNMWLEQYRNTVKASTYTIQKVAIDKHILPLFGHI 105

Query: 110 DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
              KIT +  +  V             +     +F +A+    +  NP   V RPK++ +
Sbjct: 106 RMSKITIQFCQKQVNHWFSYYKKYSNLIGITTSVFNYAINIRLLNNNPMDGVIRPKKQQK 165

Query: 170 GIR-----PWTK-EDMQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNI 221
                   P+   E +  F S   E    +L   F  L Y+GLR  +      + +  + 
Sbjct: 166 VDEEDYIAPFYDREQLLTFLSVVKENYSEQLFVMFRILGYTGLRKGELHALRWKDIDFDK 225

Query: 222 FSIKTQKTGTIIT----VELPDGFMKLLAMTPIGKET----------------------- 254
            ++  ++T   +     V  P    K +    +  ET                       
Sbjct: 226 KTLTVKQTLATVQNWELVFQPPKTRKSIRTISLDNETLGLIKKWKLHQQKFLFQFGINSL 285

Query: 255 -----FFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELM 308
                 F + + + +     +        +  + K + HG R    ++  +AG +  ++ 
Sbjct: 286 SQEQLLFPSTENKPLYLDYLNHNLSKILKENRLPKMTVHGFRHTHCSLLFEAGVSIKDVQ 345

Query: 309 ATYGWKTVDQAE-TYTKGADRIR 330
              G   +      Y    ++ +
Sbjct: 346 ERMGHTDIKTTMNIYAHVTEQRK 368


>gi|325280655|ref|YP_004253197.1| integrase family protein [Odoribacter splanchnicus DSM 20712]
 gi|324312464|gb|ADY33017.1| integrase family protein [Odoribacter splanchnicus DSM 20712]
          Length = 405

 Score = 94.3 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 59/329 (17%), Positives = 116/329 (35%), Gaps = 52/329 (15%)

Query: 43  FIPAYMS-ALTGST-PKREYINSPRKKPTTLKWLISEYRKSAHW------GSLAVNSRIS 94
           F   Y    L G     R  +N  + K  T K L + +++             A  +   
Sbjct: 77  FYQIYQDLELEGKIISARAIVNRYQGKDETFKTLYNVFKEHNDNCRKLIGTDYADITVRR 136

Query: 95  FESYFDQIIR------KSGDFDYRKITTKHIRSGVESRKH----TPSSAIQFLTSMRVLF 144
           +++    ++       K  D   R++  + +R      K       ++ I+++   + + 
Sbjct: 137 YDNCLKYLMELVKRDYKIDDILLREVNGELVRKFDLYLKTEKHCAQNTVIRYMKCFKKVI 196

Query: 145 KWAVRQEYVAINPCLSVERPKR--------KTEGIRPWTKE-DMQQFKSFWSEGSQPRLA 195
             A+  E++  NP   ++  +         ++E  R W KE  +++ +         R  
Sbjct: 197 NLAIANEWLTKNPFAGIKFHEVEVNKQFLSQSEINRIWQKEFKIERLE-------LVRDV 249

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVEL---PDGFMKLLAM 247
           F F +Y+GL   D      +H+  +           +KT  +  + L   P   ++    
Sbjct: 250 FIFCVYTGLAFIDVYNLHPEHISEDGNGNLWIVKPREKTNNLCNIPLLSIPKQILEKYKD 309

Query: 248 TP--IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG-A 302
            P  + K T       QKMN+     + K  A   G+ K  + H  R   A++ A A   
Sbjct: 310 NPYCMDKGTLLPVPCNQKMNS-----YLKEIADLCGIKKNLTTHTARHSFASVIALANNV 364

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRL 331
           +   +    G  +    + Y K  D+  L
Sbjct: 365 SLPNVAKMLGHSSTRMTQHYAKVLDQTIL 393


>gi|254452140|ref|ZP_05065577.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 238]
 gi|198266546|gb|EDY90816.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 238]
          Length = 368

 Score = 94.3 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 47/322 (14%), Positives = 110/322 (34%), Gaps = 20/322 (6%)

Query: 9   PFVTKERTRHGKIIYYFRK---GHGRRIRL-PYPHESTFIPAYMSALTGSTPKREYINSP 64
             +     +  K  +YF+K   G  +RI +  +P  S       +        R    + 
Sbjct: 38  KGLVLFVGKRSKT-WYFQKDVGGQTKRILIGRFPIISAQAARQTALGFALEMGRGAGKAA 96

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
           +    TL+  +  Y         +  +++   +     ++        +I+         
Sbjct: 97  QIGAPTLEATMEVYLARPKLR--SETNKVGMRAQLTLHLKDWMRLPLDEISKAMTVRRHH 154

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
               +PS+A   L S R ++  A R   +   P +++E  + K +G      +  ++   
Sbjct: 155 DMAGSPSAANHVLRSFRAIYNHARRTCDLPECPTMAIEWFEDKPDGRIIENLKHWRKTID 214

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
                   R+ +E LL++GLR ++      + +  +   +   K G    + +     ++
Sbjct: 215 DLPNPIH-RVFYELLLFTGLRKTEVFTLKWEQILEDRIHLPMTKNGRSFDLPISQLHHEI 273

Query: 245 LAMT-PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGAT 303
           LA   P+  +  F          ++     +       +  + H  R+  AT++ +AG  
Sbjct: 274 LAPLRPLSSDWVF------PSPKSETGHITRPVR----LKYNPHMHRRTFATVAMEAGVL 323

Query: 304 AHELMATYGWKTVDQA-ETYTK 324
              +        +    + YT+
Sbjct: 324 EEIVGRLLNHTPLSITGQRYTR 345


>gi|323947987|gb|EGB43981.1| phage integrase [Escherichia coli H120]
          Length = 426

 Score = 94.3 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 45/317 (14%), Positives = 97/317 (30%), Gaps = 64/317 (20%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK-ITTKHIRSGVESR-- 126
           T+K L  ++        +A  S  ++ +    I+   G+ +    I  + +    +    
Sbjct: 80  TIKELAEKFLALKE-TEVAKTSLNTYRAVIKNILSIIGEKNLASSINKEKLLEVRKELLT 138

Query: 127 --------------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
                           +  +   ++T++  +F++ V   Y+A NP   +   K       
Sbjct: 139 GYQIPKSNYIVTQPGRSAVTVNNYMTNLNAVFQFGVDNGYLADNPFKGISPLKESRTIPD 198

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK----- 225
           P ++E+  +         Q +  +   +Y+G+R  + C  G + +   N    I+     
Sbjct: 199 PLSREEFIRLIDAC-RNQQAKNLWCVSVYTGVRPGELCALGWEDIDLKNGTMMIRRNLAK 257

Query: 226 --------TQKTGTIITV--ELPDGFMKLLAMTPIGKETFF------------------- 256
                      T  +I +     D     + +T + KE                      
Sbjct: 258 DRFTVPKTQAGTNRVIHLIKPAIDALRSQMTLTRLSKEHIIDVHLREYGRTEKHKCTFVF 317

Query: 257 -------INNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELM 308
                  + N             + A   +AG+ ++ ++  R   A  S  AGA    + 
Sbjct: 318 QPEVSARVKNYGDHFTVDSIRQMWDAAIKRAGLRHRKSYQSRHTYACWSLTAGANPAFIA 377

Query: 309 ATYGWKTVDQA-ETYTK 324
              G        + Y K
Sbjct: 378 NQMGHADAQMVFQVYGK 394


>gi|309378134|emb|CBX23224.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 164

 Score = 94.3 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 24/151 (15%), Positives = 52/151 (34%), Gaps = 12/151 (7%)

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG--------- 240
           + +   E +  +GLR S++      ++  +   I    K      V +            
Sbjct: 2   RDKALLELMYATGLRVSEAVGLNFGNVDLDRGCITALGKGDKQRMVPMGQESAYWVGRYY 61

Query: 241 -FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISA 298
              + + +     +  F++  K  ++     +  K  A++AG+   S H +R   AT   
Sbjct: 62  TEARPVLLKGRSCDALFVSQKKTGISRQLAWMIVKEYASQAGIGHISPHSLRHAFATHLV 121

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRI 329
             G     +    G   ++  + YT  A+  
Sbjct: 122 QHGLDLRVVQDMLGHADLNTTQIYTHIANVR 152


>gi|301326452|ref|ZP_07219804.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 78-1]
 gi|300846868|gb|EFK74628.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 78-1]
 gi|324019448|gb|EGB88667.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 117-3]
          Length = 431

 Score = 94.3 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 45/317 (14%), Positives = 97/317 (30%), Gaps = 64/317 (20%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK-ITTKHIRSGVESR-- 126
           T+K L  ++        +A  S  ++ +    I+   G+ +    I  + +    +    
Sbjct: 85  TIKELAEKFLALKE-TEVAKTSLNTYRAVIKNILSIIGEKNLASSINKEKLLEVRKELLT 143

Query: 127 --------------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
                           +  +   ++T++  +F++ V   Y+A NP   +   K       
Sbjct: 144 GYQIPKSNYIVTQPGRSAVTVNNYMTNLNAVFQFGVDNGYLADNPFKGISPLKESRTIPD 203

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK----- 225
           P ++E+  +         Q +  +   +Y+G+R  + C  G + +   N    I+     
Sbjct: 204 PLSREEFIRLIDAC-RNQQAKNLWCVSVYTGVRPGELCALGWEDIDLKNGTMMIRRNLAK 262

Query: 226 --------TQKTGTIITV--ELPDGFMKLLAMTPIGKETFF------------------- 256
                      T  +I +     D     + +T + KE                      
Sbjct: 263 DRFTVPKTQAGTNRVIHLIKPAIDALRSQMTLTRLSKEHIIDVHLREYGRTEKHKCTFVF 322

Query: 257 -------INNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELM 308
                  + N             + A   +AG+ ++ ++  R   A  S  AGA    + 
Sbjct: 323 QPEVSARVKNYGDHFTVDSIRQMWDAAIKRAGLRHRKSYQSRHTYACWSLTAGANPAFIA 382

Query: 309 ATYGWKTVDQA-ETYTK 324
              G        + Y K
Sbjct: 383 NQMGHADAQMVFQVYGK 399


>gi|301309916|ref|ZP_07215855.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           20_3]
 gi|300831490|gb|EFK62121.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           20_3]
          Length = 311

 Score = 94.3 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 48/284 (16%), Positives = 103/284 (36%), Gaps = 36/284 (12%)

Query: 90  NSRISFESYFDQIIRKSG--DFDYRKITTKH---IRSGVESRKHTPSSAIQFLTSMRVLF 144
           ++  S++   +      G     Y  I        +S +  +  + ++   ++  +R ++
Sbjct: 25  STAKSYQDALNSFKCFCGMEAIPYAYINRNRLLCYQSWLLDKGRSLNTVSTYMRRIRHIY 84

Query: 145 KWAVRQEYVAINP------CLSVERPKRKTEGIRPWTKEDMQQ-FKSFWSEGSQPRLAFE 197
             AV        P         VE  ++K        +E +++ F +   + S  R+   
Sbjct: 85  NLAVEANEAPFVPNLFKDVFTGVESKRKK-----ALPREMLERMFNAELEDPSLRRVQLT 139

Query: 198 FLL---YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL----AMTPI 250
             L   +SG+   D      +++++ I     QK+G++I +E+P G ++LL    A T  
Sbjct: 140 VRLMFAFSGIAFVDLAHLKWENIRDGILQYHRQKSGSLIQLEIPSGALRLLDELSACTAK 199

Query: 251 GKETFFINNDKQKMNA----------TQFSIWFKAKATKAG--VNKSAHGVRKFSATISA 298
                F      +             ++F+   K  A   G  +  +++ +R   A+   
Sbjct: 200 ESLYLFPFLSGTRTGEAAYKEYNRILSRFNHDLKLLARSTGVTLPVTSYTIRHSFASFLK 259

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
           +   +   +    G K++   + Y K     RL   N     SV
Sbjct: 260 EQDVSIEVISELLGHKSIKTTQIYLKSFSLERLSTVNRNCFESV 303


>gi|320182626|gb|EFW57515.1| Phage integrase [Shigella boydii ATCC 9905]
          Length = 358

 Score = 94.3 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 43/276 (15%), Positives = 88/276 (31%), Gaps = 26/276 (9%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--K 127
           T+   I  Y+        + N+  +  +  + I  K G     +ITT+HI   ++     
Sbjct: 75  TMADWIERYKTILIRRKASRNTYKTRVNQLETIKEKLGGVLLTEITTRHIAEFLDLWIEG 134

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK--RKTEGIRPWTKEDMQQFKSF 185
              + A    + +  +F+ A+ +  ++ NP      PK     E ++  T   +++    
Sbjct: 135 GKNTMAGSMRSVLSDMFREAIVEGRISQNPVTPTRAPKIVVTRERLKLKTYNCIREAADQ 194

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
                   LA +  L +G R  D        + ++   I+  KTG +I + L        
Sbjct: 195 LPAWFP--LAMDLALVTGQRREDITNMRFSDIYDDRLHIRQIKTGMMIAIPLSLSLPVAG 252

Query: 246 AMTP--------IGKETFFINNDKQKMN------ATQFSIWFKAKATKAGV-----NKSA 286
                       + +  + I+   +K +          +  F A     G+       + 
Sbjct: 253 LRLGAVVKQCRMVSRGDYLISAGIRKNSPDGSIHPDGLTKKFVAARKLTGILFSENPPTF 312

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           H +R   A                 G  +    + Y
Sbjct: 313 HEIR-SLAGRLYKEICGEEFAQRLLGHTSEKTTKMY 347


>gi|226306026|ref|YP_002765986.1| tyrosine recombinase XerC [Rhodococcus erythropolis PR4]
 gi|226185143|dbj|BAH33247.1| tyrosine recombinase XerC [Rhodococcus erythropolis PR4]
          Length = 310

 Score = 94.3 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 39/293 (13%), Positives = 94/293 (32%), Gaps = 30/293 (10%)

Query: 68  PTTLKWLISEYRKSAHW-GSLAVNSRISF----ESYFDQIIRKSGDFDYRKITTKHIRSG 122
           P +L   +  Y +        + ++  ++     +        S + D  ++    +RS 
Sbjct: 8   PASLSVHLDAYAEHLRLSRGRSEHTIRAYVGDARALLTHFSAGSENADLDRLDLSVMRSW 67

Query: 123 VESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK--- 176
           + ++       ++  +  +S R    W  +   ++++P   +  P  +        +   
Sbjct: 68  LAAQNAVGTARTTVARRASSARGFTAWLAQTGRISVDPGTRLAAPPARRTLPTVLRQSQA 127

Query: 177 -EDMQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTG 230
            + M   +S          + RL  E L  +G+R  + C   V+ +  +   ++   K  
Sbjct: 128 LDAMDAAESGAQQQEPLALRDRLIVELLYSTGIRVGELCGLDVESVDADRRLLRVLGKGN 187

Query: 231 TIITVELPDGFMKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKA--KAT 278
              +V         L            +        +     +++  Q          A 
Sbjct: 188 KERSVPYGLPAESALNGWLEHGRPALSSDRSGRALLLGVRGGRLDQRQARSVVHETMAAI 247

Query: 279 KAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330
               +   HG+R  +AT   + GA    +    G  ++   + YT    +R+R
Sbjct: 248 PGAPDMGPHGLRHSAATHLLEGGADLRVVQELLGHASLATTQLYTHVSVERLR 300


>gi|209919029|ref|YP_002293113.1| phage integrase [Escherichia coli SE11]
 gi|209912288|dbj|BAG77362.1| phage integrase [Escherichia coli SE11]
          Length = 325

 Score = 94.3 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 49/301 (16%), Positives = 98/301 (32%), Gaps = 12/301 (3%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRK-SAHWGS 86
             G+RIR  +  +S  +      L          NS  ++P ++  LI  + K       
Sbjct: 19  RKGKRIRKKFKTKSDAVLYERWVLAQQHNNEWKGNSIDRRPLSV--LIDLWWKYHGQLMK 76

Query: 87  LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKW 146
              N+R+      + +           + T+ +R     +   PS+  + + ++  +F  
Sbjct: 77  SGHNTRLKLLRLSEAMDDPCVHKLNTTMLTE-LRVSRIEQGIQPSTINREIGALSAMFTA 135

Query: 147 AVRQEY-VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLR 205
            +   + +  NP   ++  K     +   +K +  Q     +E    RLA E LL +G R
Sbjct: 136 LISSGHFLNDNPVQGLKGMKVNEREMGYLSKSECVQLLDALAENPDERLAVEILLSTGAR 195

Query: 206 CSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN 265
             +      + + +   +    K     TV + +   +   +   G +  F   D     
Sbjct: 196 WGEVAALEQRRVLHCRITFSKTKNSKNRTVPISESLFE--KIKKRGGKLVFPTLD----- 248

Query: 266 ATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
            +      K  A      ++ H +R   A+     G     L    G   +     Y   
Sbjct: 249 YSLVRDVIKTVAPDVPDGQAVHALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIYAHL 308

Query: 326 A 326
           A
Sbjct: 309 A 309


>gi|312887736|ref|ZP_07747325.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
 gi|311299831|gb|EFQ76911.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
          Length = 412

 Score = 94.3 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 58/310 (18%), Positives = 111/310 (35%), Gaps = 33/310 (10%)

Query: 46  AYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISF---ESYFDQI 102
            +   L  +   +  +    ++ TTL WL++ Y  +     L   +  ++   E Y  + 
Sbjct: 85  RFNKELVNAEAIKAKVEGIDEEQTTLLWLMN-YHNTEIKKLLEDGTMKNYFTTERYVKEF 143

Query: 103 I---RKSGDFDYRKITTKHI-------RSGVESRKHTPSSAIQFLT---SMRVLFKWAVR 149
           +   +K  D    ++  K +       R     +   P +    +     +R +   AV+
Sbjct: 144 LLKKKKRHDIYLSQLDYKFVVDFEIYLRQREPDKNQRPCANNTVMKHIERLRKMINIAVK 203

Query: 150 QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK--SFWSEGSQ-PRLAFEFLLYSGLRC 206
            E++  +P L  ER K   +       E+++  K      +G +  R  F F  Y+GL  
Sbjct: 204 NEWLIKDPFLRFER-KIVNKDREALELEEIENIKGVKLDKDGQRIVRDVFIFSCYTGLSF 262

Query: 207 SDSCRAGVQHL-----QNNIFSIKTQKT----GTIITVELPDGFMKLLAMTPIGKETFFI 257
           +D C     HL           +   KT    G    V L    ++L+          + 
Sbjct: 263 ADMCLLNNNHLVTDIEGEKWIEMIRHKTANFSGKKFFVLLLPEAIELINRYRNHPMAGYT 322

Query: 258 NNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSAT-ISADAGATAHELMATYGWK 314
                  +    + + KA A +A V+K  + H  R   AT I+ + G     +    G  
Sbjct: 323 KTIFPVFSNQATNRYLKAIAKEAKVDKKLTFHIARHTFATTITLENGVPMETVSGMLGHA 382

Query: 315 TVDQAETYTK 324
           ++   + Y+K
Sbjct: 383 SLRTTQIYSK 392


>gi|302520688|ref|ZP_07273030.1| integrase [Streptomyces sp. SPB78]
 gi|302429583|gb|EFL01399.1| integrase [Streptomyces sp. SPB78]
          Length = 555

 Score = 94.3 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 45/313 (14%), Positives = 102/313 (32%), Gaps = 57/313 (18%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKH 128
           TL+  ++ + ++    +++ N+   +    +  +I   G     K+  +H+    +  + 
Sbjct: 44  TLETWLTHWVENIAAPNVSENTIDGYRVAVNHHLIPGLGAHRLEKLEPEHLERFYKKMQE 103

Query: 129 T---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           T     +A Q   ++R     AVR+ ++  NP    + P+ + + + P++ E++Q+  + 
Sbjct: 104 TGSAAGTAHQTHRTIRTCLNEAVRRGHLTRNPATIAKAPRLEEDEVEPYSVEEVQRLLAE 163

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI------------------------ 221
             +           L  GLR  +        +   +                        
Sbjct: 164 AGKHRNAARWV-IALALGLRQGEVLGMQWTDVDFELGVIRVRRGRLRPRYEHGCGNRCGR 222

Query: 222 --------FSIKTQKTGT-----IITVELPDGFMKLLAMTP--------------IGKET 254
                    +++ +            + +PD  M LL                    KE 
Sbjct: 223 KPGFCPQKINVRRETKNVKSRAGQRPIGVPDELMTLLRRHKEEQGRERALARDLWTEKEY 282

Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGW 313
            F +   + +N       +K     AGV +   H  R  +AT+    G +   + +  GW
Sbjct: 283 VFTSPVGEPLNPNTDFHRWKDLLKAAGVRDGRLHDARHTAATVLLILGISDAVVDSIMGW 342

Query: 314 KTVDQAETYTKGA 326
           +    A    +  
Sbjct: 343 EPGKSARMRRRYQ 355


>gi|289423952|ref|ZP_06425745.1| phage integrase [Peptostreptococcus anaerobius 653-L]
 gi|289155729|gb|EFD04401.1| phage integrase [Peptostreptococcus anaerobius 653-L]
          Length = 343

 Score = 94.3 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 53/302 (17%), Positives = 100/302 (33%), Gaps = 36/302 (11%)

Query: 67  KPTTLKWLISEY--RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
           K  TLK    EY    S       V ++  +    + I       +   I+ K I    +
Sbjct: 52  KDITLKQAKEEYFDYISTRLRESTVRNKRWYAKNLEYI----EHINLLNISPKTILDWQK 107

Query: 125 SRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
             +    +  +  Q    +  +FK   +      NP  ++E+   + + +  WT ++   
Sbjct: 108 HMQDIGKSNKTINQSTEVLYGIFKHNCKMYSNTHNPVKAIEKLPTEKKEMDYWTLDEFNT 167

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-----------KTG 230
           F  F  +  +  LAF+ L Y G+R  +     +  + +    I              K  
Sbjct: 168 FLGFVEDPEKS-LAFKILFYGGIRYGELLGLQIGDIYDTYIDINKSYDYRSKKFCPTKNK 226

Query: 231 TIIT-VELPDGFMKLLAM------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
             +  V +PD  M  +         P  K+  F      K   T  S   K    K  ++
Sbjct: 227 QSVRQVVMPDKIMDDIRAYISTLYKPGKKDRLF-----SKTTNTWLSRQLKVTCEKYNLH 281

Query: 284 K-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK-GADRIRLGIKNSRRIS 340
           K   H +R   AT+  + G     +    G         TY+    +R    +    +++
Sbjct: 282 KIRVHDLRHSHATLLINNGIDVLIISHRLGHSNPTTTLNTYSHLYKNRSTEAVDLLNKLA 341

Query: 341 SV 342
           ++
Sbjct: 342 NL 343


>gi|257093399|ref|YP_003167040.1| integrase family protein [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
 gi|257045923|gb|ACV35111.1| integrase family protein [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
          Length = 305

 Score = 94.3 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 52/284 (18%), Positives = 91/284 (32%), Gaps = 26/284 (9%)

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT--PSSAIQF 136
            K      L   +  ++     ++     D     ++   +       + T   SS    
Sbjct: 20  LKHLKLKGLQPKTIEAYSRAIRRVGDYF-DHQIGDLSEADLVDYFTDLRETHSWSSVKLD 78

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196
           L  ++  ++  +++ +V      S+ +P R        T E+ ++        S  R+ F
Sbjct: 79  LYGLKFHYEHVLKKPWV----APSLIKPPRSQRLPDIVTVEETERIFLATQVLSY-RVFF 133

Query: 197 EFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTGTIITVELPDGFMKLLAM---TPIG 251
             L   GLR  +  R  V  +        I+  K      V LP    +LL         
Sbjct: 134 FTLYSLGLRLGEGLRLTVGDIDGACERVHIRDAKGNKDRLVPLPTATHQLLRRFWQRHRN 193

Query: 252 KETFFINNDKQ---------KMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
               F N              ++        +A     GV K  S H +R   AT   +A
Sbjct: 194 PVLLFPNRHGGLAGARAARTPLDRGGVQKALRAVVESCGVKKHISPHSLRHAYATHLVEA 253

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
           G    E+    G  ++     YT   DR R       RI++++D
Sbjct: 254 GVELTEVQDILGHHSILTTVRYTHLTDRSR--HHAIDRINALMD 295


>gi|241992627|gb|ACS73673.1| IntI1 [uncultured bacterium]
          Length = 315

 Score = 94.3 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 42/306 (13%), Positives = 93/306 (30%), Gaps = 62/306 (20%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129
           ++ + R+   +   ++ +  ++  +    IR  G      + +  + + +      RK +
Sbjct: 16  VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75

Query: 130 PSSAIQFLTSMRVLFK--WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            S+  Q L ++   +         ++       + RP+         T +++ +   F  
Sbjct: 76  VSTHRQALAALLFFYGKVLCADLPWLQ-----EIGRPRPSRRLPVVLTPDEVVRILGFL- 129

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQH--LQNNIFSIKTQKTGTIITVELPDGFMKLL 245
           EG   RL  + L  +G+R S+  +  V+     +    ++  K      + LP+     L
Sbjct: 130 EGEH-RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSL 188

Query: 246 AMTPIGKETFFINN---------------------------------------------D 260
                    +++ +                                              
Sbjct: 189 REQLSRARAWWLKDQAEGRSGVALPDTLERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVR 248

Query: 261 KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           +  M    F   FK    +AG+ K  + H +R   AT    +G     +    G   V  
Sbjct: 249 RHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVST 308

Query: 319 AETYTK 324
              YT 
Sbjct: 309 TMIYTH 314


>gi|213968068|ref|ZP_03396213.1| site-specific recombinase, phage integrase family [Pseudomonas
           syringae pv. tomato T1]
 gi|301385270|ref|ZP_07233688.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. tomato Max13]
 gi|213927048|gb|EEB60598.1| site-specific recombinase, phage integrase family [Pseudomonas
           syringae pv. tomato T1]
          Length = 367

 Score = 94.3 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 53/348 (15%), Positives = 109/348 (31%), Gaps = 37/348 (10%)

Query: 7   LPPFVTKERT-RHGKIIYYFRKGHGRRI----RLPYPHESTFIPAYMSALTGSTPKREYI 61
           LPP + ++   R+G   Y +R     R+    +         + A  + +   T +    
Sbjct: 13  LPPNLYRKTDKRNGHTYYTYRDPVTGRMFGLGKDKAAAIMEAVAANHADVLKPTLRERLA 72

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121
               ++  T    + EY        L+ ++  S +S    +    G    R I T  I +
Sbjct: 73  EPIAEQDRTFADWLVEYDLIYPERGLSSHTTRSIKSRLKALKDAFGSRYLRSIRTMDIAT 132

Query: 122 GVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
            + +  +      +    + +R +F  A+   +  +NP  + +  + K +  R  + E  
Sbjct: 133 FLATFTKAGKAPMSKALRSLLRDVFTEAIAAGWCDLNPVDATKAARSKVKRSR-LSLELW 191

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239
           +   +        R A E  L +G R  D      +   +    +   KTG  + +    
Sbjct: 192 KAAHAATDRPWLKR-AMELALLTGQRRDDIASMLFKDEYDGFLHVVQSKTGARLRISTAL 250

Query: 240 GFMKLLAMTPI----------------GKETFFINNDKQKMNATQFSIWFKAK----ATK 279
               +                         T  +      +  T  ++ F       A  
Sbjct: 251 RLEAIDLDLSSVVRMCRDRVLSKHLVHHTRTVAVAKAGSPIKLTTLTLAFAQARDKGAAA 310

Query: 280 AGVNK-----SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
            G++      S H +R  +A + +  G    +L    G +     E Y
Sbjct: 311 LGIDLGENPPSFHEMRSLAARLHSAEGRDPQKL---LGHRNAAMTEMY 355


>gi|150390297|ref|YP_001320346.1| phage integrase family protein [Alkaliphilus metalliredigens QYMF]
 gi|149950159|gb|ABR48687.1| phage integrase family protein [Alkaliphilus metalliredigens QYMF]
          Length = 372

 Score = 94.3 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 41/287 (14%), Positives = 86/287 (29%), Gaps = 46/287 (16%)

Query: 91  SRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQ 150
           +      Y      +        I  +     +E+      +  +  +S+ VLFK+  R 
Sbjct: 95  TAKDINRYLGDFCSRY------SIEKEESIKIMENHN---RALARKKSSLAVLFKFLYRD 145

Query: 151 EYVAINPCLS---VERPKRKTEGIRPWTKEDMQQFKSFWSEG---------------SQP 192
             +  N       +  PK + + I+    +++ +       G                + 
Sbjct: 146 GLIKQNISDGLNPIRLPKPQPDAIKRLEIDEVARMIDCVDLGEAFTEKEKTYWQKTKLRD 205

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELP------------D 239
           +      L  GLR S+  +  +     N    K  +K G    + +             +
Sbjct: 206 KAILMLFLTYGLRLSELEQLNISSFNFNRGEFKIYRKRGKETAMPINRTCETVIKEYMAN 265

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK-----AGVNKSAHGVRKFSA 294
              +  A+    K+  F++  +++M         K          A    S H +R  +A
Sbjct: 266 ERPQSSALDEEHKDALFLSLQRKRMTTRAIRNMVKKYTALVLDTTAKNGYSPHKLRATAA 325

Query: 295 TISADAGATAHELMATYGWKTVDQAETY-TKGADRIRLGIKNSRRIS 340
           T     G + +++        V   + Y     D  R  +KN   + 
Sbjct: 326 TSLIQQGFSIYDVQNLLDHDDVTTTQLYAAHKKDVKRQIVKNFEWLD 372


>gi|298384323|ref|ZP_06993883.1| mobilizable transposon, int protein [Bacteroides sp. 1_1_14]
 gi|298262602|gb|EFI05466.1| mobilizable transposon, int protein [Bacteroides sp. 1_1_14]
          Length = 347

 Score = 94.3 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 48/244 (19%), Positives = 89/244 (36%), Gaps = 20/244 (8%)

Query: 105 KSGDFDY---RKITTKHIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPC 158
             GD +    +K     + +      + P   +SA  + ++ R L K A R ++   N  
Sbjct: 106 TFGDVNVDLCKKFREYLLNAKQLKHSNRPISLNSASGYYSTFRGLLKIAYRDKWFRENIN 165

Query: 159 LSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL- 217
             +++ + +       T  +++Q  +   +    + A  F   +GLR SD      +   
Sbjct: 166 DYLDKIEPQDVKKEYLTLNEVKQLAATPCDIPVLKAASLFACLTGLRISDILNLQWEDFT 225

Query: 218 ----QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF 273
               Q     I+TQKT T  T+ +     + L  TP   + F      + +  +  +   
Sbjct: 226 IAPDQGYCLRIRTQKTQTEATLPISYEAYE-LCGTPGTGKVF------KDLKRSMINYPL 278

Query: 274 KAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           K+   KAG+ K  + HG R   A I    G   + +      K V   + Y    +  + 
Sbjct: 279 KSWLKKAGITKPITFHGFRHSYAVIQISLGTDIYTVSKMLTHKNVSTTQIYADLVNSKKR 338

Query: 332 GIKN 335
              N
Sbjct: 339 ETAN 342


>gi|253563508|ref|ZP_04840965.1| mobilizable transposon [Bacteroides sp. 3_2_5]
 gi|251947284|gb|EES87566.1| mobilizable transposon [Bacteroides sp. 3_2_5]
          Length = 347

 Score = 94.3 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 48/244 (19%), Positives = 89/244 (36%), Gaps = 20/244 (8%)

Query: 105 KSGDFDY---RKITTKHIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPC 158
             GD +    +K     + +      + P   +SA  + ++ R L K A R ++   N  
Sbjct: 106 TFGDVNVDLCKKFREYLLNAKQLKHSNRPMSLNSASGYYSTFRGLLKIAYRDKWFRENIN 165

Query: 159 LSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL- 217
             +++ + +       T  +++Q  +   +    + A  F   +GLR SD      +   
Sbjct: 166 DYLDKIEPQDVKKEYLTLNEVKQLAATPCDIPVLKAASLFACLTGLRISDILNLQWEDFT 225

Query: 218 ----QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF 273
               Q     I+TQKT T  T+ +     + L  TP   + F      + +  +  +   
Sbjct: 226 IAPDQGYCLRIRTQKTQTEATLPISYEAYE-LCGTPGTGKVF------KDLKRSMINYPL 278

Query: 274 KAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           K+   KAG+ K  + HG R   A I    G   + +      K V   + Y    +  + 
Sbjct: 279 KSWLKKAGITKPITFHGFRHSYAVIQISLGTDIYTVSKMLTHKNVSTTQIYADLVNSKKR 338

Query: 332 GIKN 335
              N
Sbjct: 339 ETAN 342


>gi|268589662|ref|ZP_06123883.1| site-specific recombinase, phage integrase family [Providencia
           rettgeri DSM 1131]
 gi|291314972|gb|EFE55425.1| site-specific recombinase, phage integrase family [Providencia
           rettgeri DSM 1131]
          Length = 328

 Score = 94.3 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 58/305 (19%), Positives = 105/305 (34%), Gaps = 20/305 (6%)

Query: 26  RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG 85
           R+G   R R    HE+     Y  AL+    K     S   +P  L+ LI  +  +  +G
Sbjct: 20  RQGKRVRRRFDTKHEAVLFERY--ALSNKMHKDWLDKSNDIRP--LQDLIDLWWNT--FG 73

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRKITTKH---IRSGVESRKHTPSSAIQFLTSMRV 142
             +  ++ +      +I     +     +T K     R    +    PS+  +  +++  
Sbjct: 74  KSSEYAQDTLLRA-TRIATALDNPPMCLLTDKQLALYRELRLAAGIKPSTINRDFSAISG 132

Query: 143 LFKWAVRQEY-VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201
           +F    R +  +  +P   + R K+K   +   T E++    +    G   ++A    L 
Sbjct: 133 IFTALKRTDLFMGKHPIRGLSRLKQKATEMSYLTHEEIGLLLNILK-GDNKKVAI-LCLS 190

Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK 261
           +G R  ++ +   +H+  N       KTG    V +       +     G    F N   
Sbjct: 191 TGARWGEAVKLKREHVIQNKIRFTFTKTGKARIVPISQEVADKVCTRKSG--LLFPNT-- 246

Query: 262 QKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
              +   F    K         ++ H +R   AT     G +   L    G  T+ Q  T
Sbjct: 247 ---SYDMFRKHIKTIKPDMPQGQATHALRHTFATHFMMNGGSIITLQRILGHSTLQQTLT 303

Query: 322 YTKGA 326
           Y   A
Sbjct: 304 YAHFA 308


>gi|85059065|ref|YP_454767.1| putative phage integrase [Sodalis glossinidius str. 'morsitans']
 gi|84779585|dbj|BAE74362.1| putative phage integrase [Sodalis glossinidius str. 'morsitans']
          Length = 256

 Score = 94.3 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 83/230 (36%), Gaps = 10/230 (4%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMS--ALTGSTPKREYINS- 63
           LPP +     R+G  I Y     G+   L          A  +  A+ GS+ +   ++S 
Sbjct: 12  LPPNLQ---PRNGGYICYRDPRTGKEYGLGCNRREAITQAIAANMAIYGSSKQSPLVDSI 68

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
              + TT+    + Y +      L   +   +  Y   +    G F  +K+ TK I   +
Sbjct: 69  SGTQATTVNEWTTRYLEILESRKLKPKTMSEYNKYLKAVNAYLGKFAIQKVETKDIADFL 128

Query: 124 E--SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
              ++    + A      +R LF+ A+ +  +  NP  +    +   +  R  T +  + 
Sbjct: 129 YQWAKAGKVTMANCIRALLRDLFREAIAEGLLKSNPAEATRNQRIDIQRERI-TLDAWKL 187

Query: 182 FKSFWS-EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
            +       +      +  L +G R  D      + +++    IK  KTG
Sbjct: 188 IRKAADTLPAWVGPCLDLALVTGQRLGDIQALRWEDIKDGRLYIKQAKTG 237


>gi|315291911|gb|EFU51263.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 153-1]
          Length = 431

 Score = 94.3 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 45/317 (14%), Positives = 97/317 (30%), Gaps = 64/317 (20%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK-ITTKHIRSGVESR-- 126
           T+K L  ++        +A  S  ++ +    I+   G+ +    I  + +    +    
Sbjct: 85  TIKELAEKFLALKE-TEVAKTSLNTYRAVIKNILSIIGEKNLASSINKEKLLEVRKELLT 143

Query: 127 --------------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
                           +  +   ++T++  +F++ V   Y+A NP   +   K       
Sbjct: 144 GYQIPKSNYIVTQPGRSAVTVNNYMTNLNAVFQFGVDNGYLADNPFKGISPLKESRTIPD 203

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK----- 225
           P ++E+  +         Q +  +   +Y+G+R  + C  G + +   N    I+     
Sbjct: 204 PLSREEFIRLIDAC-RNQQAKNLWCVSVYTGVRPGELCALGWEDIDLKNGTMMIRRNLAK 262

Query: 226 --------TQKTGTIITV--ELPDGFMKLLAMTPIGKETFF------------------- 256
                      T  +I +     D     + +T + KE                      
Sbjct: 263 DRFTVPKTQAGTNRVIHLIKPAIDALRSQMTLTRLSKEHIIDVHLREYGRTEKHKCTFVF 322

Query: 257 -------INNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELM 308
                  + N             + A   +AG+ ++ ++  R   A  S  AGA    + 
Sbjct: 323 QPEVSARVKNYGDHFTVDSIRQMWDAAIKRAGLRHRKSYQSRHTYACWSLTAGANPAFIA 382

Query: 309 ATYGWKTVDQA-ETYTK 324
              G        + Y K
Sbjct: 383 NQMGHADAQMVFQVYGK 399


>gi|301309511|ref|ZP_07215453.1| tyrosine type site-specific recombinase [Bacteroides sp. 20_3]
 gi|300832600|gb|EFK63228.1| tyrosine type site-specific recombinase [Bacteroides sp. 20_3]
          Length = 418

 Score = 94.3 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 33/208 (15%), Positives = 71/208 (34%), Gaps = 11/208 (5%)

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           + ++A  + +  +   K A    Y+ ++    V+  + +       T +++ +      +
Sbjct: 201 SQNTASTYFSIFKAALKQAFIDGYLTVDIGAKVKGIQGQESRREYLTIDELNRLAQTPCD 260

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----NNIFSIKTQKTGTIITVELPDGFMKL 244
               R A    L +GLR  D  +     ++    +   +   QKT  +  + + +   +L
Sbjct: 261 PLLKRAALFSAL-TGLRHCDIQKLKWSEIEVFNGSYRLNFTQQKTKGVEYMPISEQAFQL 319

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302
                 G++  F                 K    +AG+ K  + H  R   AT+    G 
Sbjct: 320 CGERKDGEQLVFAGLPDPSWINRP----IKKWVVEAGITKHITYHCFRHSYATLQLAGGT 375

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIR 330
             + +    G   V   + Y K  D  +
Sbjct: 376 DIYTVSKMLGHTNVRTTQVYAKVVDAKK 403


>gi|241992647|gb|ACS73687.1| IntI1 [uncultured bacterium]
          Length = 315

 Score = 94.3 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 42/306 (13%), Positives = 93/306 (30%), Gaps = 62/306 (20%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129
           ++ + R+   +   ++ +  ++  +    IR  G      + +  + + +      RK +
Sbjct: 16  VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75

Query: 130 PSSAIQFLTSMRVLFK--WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            S+  Q L ++   +         ++       + RP+         T +++ +   F  
Sbjct: 76  VSTHRQALAALLFFYGKVLCTDLPWLQ-----EIGRPRPSRRLPVVLTPDEVVRILGFL- 129

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
           EG   RL  + L  +G+R S+  +  V+     +    ++  K      + LP+     L
Sbjct: 130 EGEH-RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSL 188

Query: 246 AMTPIGKETFFINN---------------------------------------------D 260
                    +++ +                                              
Sbjct: 189 REQLPRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVR 248

Query: 261 KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           +  M    F   FK    +AG+ K  + H +R   AT    +G     +    G   V  
Sbjct: 249 RHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVST 308

Query: 319 AETYTK 324
              YT 
Sbjct: 309 TMIYTH 314


>gi|218705077|ref|YP_002412596.1| putative defective integrase; Qin prophage [Escherichia coli
           UMN026]
 gi|293405080|ref|ZP_06649072.1| int protein [Escherichia coli FVEC1412]
 gi|298380726|ref|ZP_06990325.1| lambdoid prophage Qin defective integrase [Escherichia coli
           FVEC1302]
 gi|300901630|ref|ZP_07119692.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 198-1]
 gi|218432174|emb|CAR13062.1| putative defective integrase; Qin prophage [Escherichia coli
           UMN026]
 gi|291427288|gb|EFF00315.1| int protein [Escherichia coli FVEC1412]
 gi|298278168|gb|EFI19682.1| lambdoid prophage Qin defective integrase [Escherichia coli
           FVEC1302]
 gi|300354991|gb|EFJ70861.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 198-1]
          Length = 431

 Score = 94.3 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 44/317 (13%), Positives = 96/317 (30%), Gaps = 64/317 (20%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK-ITTKHIRSGVESR-- 126
           T+K L  ++        +A  S  ++ +    I+   G+ +    I  + +    +    
Sbjct: 85  TIKELAEKFLALKE-TEVAKTSLNTYRAVIKNILSIIGEKNLASSINKEKLLEVRKELLT 143

Query: 127 --------------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
                           +  +   ++T++  +F++ V   Y+  NP   +   K       
Sbjct: 144 GYQIPKSNYIVTQPGRSAVTVNNYMTNLNAVFQFGVDNGYLVDNPFKGISPLKESRTIPD 203

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK----- 225
           P ++E+  +         Q +  +   +Y+G+R  + C  G + +   N    I+     
Sbjct: 204 PLSREEFIRLIDAC-RNQQAKNLWCVSVYTGVRPGELCALGWEDIDLKNGTMMIRRNLAK 262

Query: 226 --------TQKTGTIITV--ELPDGFMKLLAMTPIGKETFF------------------- 256
                      T  +I +     D     + +T + KE                      
Sbjct: 263 DRFTVPKTQAGTNRVIHLIKPAIDALRSQMTLTRLSKEHIIDVHLREYGRTEKQKCTFVF 322

Query: 257 -------INNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELM 308
                  + N             + A   +AG+ ++ ++  R   A  S  AGA    + 
Sbjct: 323 QPEVSARVKNYGDHFTVDSIRQMWDAAIKRAGLRHRKSYQSRHTYACWSLTAGANPAFIA 382

Query: 309 ATYGWKTVDQA-ETYTK 324
              G        + Y K
Sbjct: 383 NQMGHADAQMVFQVYGK 399


>gi|84390124|ref|ZP_00991386.1| Phage integrase [Vibrio splendidus 12B01]
 gi|84376778|gb|EAP93653.1| Phage integrase [Vibrio splendidus 12B01]
          Length = 444

 Score = 94.3 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 53/309 (17%), Positives = 103/309 (33%), Gaps = 41/309 (13%)

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKSAHWGSL------------AVNSRISFESYFDQ 101
              +R+ + + R    TLK +I  Y ++     L            A   +    + +  
Sbjct: 100 EQERRKLLKTERVNSITLKDVIDHYLENYIQDRLTSSGGVISGARKAKGQKEVRRTLYVD 159

Query: 102 IIRKSGDFDYRKITTKHI---RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA---I 155
           I+   GD    ++    I     G+  R   P  A   L  +   +++A+  +Y+    +
Sbjct: 160 IVALLGDRSVMEVGKSDITYLIQGIIDRGA-PVQAGSVLRELSSAYEYAIGMDYLPENFV 218

Query: 156 NPCL-SVERPKRKT------EGIRPWTKEDMQQFKSFWSEGS---QPRLAFEFLLYSGLR 205
           NP L ++ + K+        +G R     ++ +F  +    S     R      L++G R
Sbjct: 219 NPALLAINKFKKSKVKLTNNKGKRVLDHSELSRFIKWLPNSSFSKNIRGILRMTLWTGCR 278

Query: 206 CSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET------FFI 257
             + C    Q      N   +   K G    V+LP   ++ L      K        F  
Sbjct: 279 TGEVCDLEWQQIDFDKNTIYLTETKNGNSRYVQLPSQAVQWLRKWKEVKSYPQSIYVFST 338

Query: 258 NNDKQKMNATQFSIW-FKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGW 313
           +     +   Q + + ++ +     ++    + H +R+   T  A  G       A  G 
Sbjct: 339 SKGGSHVVQKQLTQYTWRMRRDGLMIDMPLWTPHDLRRTVRTELARMGCPTGVAEAVLGH 398

Query: 314 KTVDQAETY 322
                  TY
Sbjct: 399 SVKGIEGTY 407


>gi|330898871|gb|EGH30290.1| Phage integrase [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 215

 Score = 94.3 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 43/197 (21%), Positives = 73/197 (37%), Gaps = 24/197 (12%)

Query: 156 NPCLSVERPKRKT-EGIRPWTKED-----MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDS 209
           NP   V+RPK ++ EG  P   +      +        +G + R     LLY GLR  ++
Sbjct: 8   NPVHGVKRPKIESNEGKTPALGDHQAKALLDAPDESTLKGLRDRAMLAVLLYHGLRREEA 67

Query: 210 CRAGVQHL--QNNIFSIKT-QKTGTIITVELPDG--------FMKLLAMTPIGKETFFIN 258
            +  V  +  +  I  +K   K G +  + L             +        K   FI 
Sbjct: 68  AQLQVSDIQERRGIQHLKIHGKGGKVRYLPLHPVAAGRIHLYLERSGHHLDDKKVPLFIP 127

Query: 259 NDKQK----MNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAGATAHELMATY 311
              +     ++A       +A A KAG+       HG+R  +AT + D  A   ++ A  
Sbjct: 128 LRGKPTDAGVSANGIYTVVEAYAKKAGIEVAGLGVHGLRATAATNALDHEADIAKVQAWL 187

Query: 312 GWKTVDQAETYTKGADR 328
           G   +   + Y +  +R
Sbjct: 188 GHANISTTKIYDRRGNR 204


>gi|317057150|ref|YP_004105617.1| integrase family protein [Ruminococcus albus 7]
 gi|315449419|gb|ADU22983.1| integrase family protein [Ruminococcus albus 7]
          Length = 378

 Score = 94.3 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 44/297 (14%), Positives = 100/297 (33%), Gaps = 40/297 (13%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISF-ESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
              L   Y  +     L  ++  ++   Y + I    G+   + I    +   ++S    
Sbjct: 70  FSELADWYFTNYAPQELKESTVYTYWGQYKNHIEPVLGNIKVKDINAPRLTQIMQSYDLN 129

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR-KTEGIRPWTKEDMQQFKSFWSE 188
           P++  +    ++ +F+    Q ++   PC +V  PKR K+   +   ++ +++F ++   
Sbjct: 130 PATVKKLYVIVQSIFRRGAEQGFIRDTPCRNVVLPKRKKSRKNKALEEDKLKRFMAYLES 189

Query: 189 GSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQ---------------NNIFSIKTQKTG 230
                  +   + LLY+G+R  +      + +                     +   KT 
Sbjct: 190 KPWDEDFKRIIKVLLYTGMRSGECLGLAWEDIDFENNTISINHTLTDIGGKHELTDPKTE 249

Query: 231 TIITVE-LPDGFMKLLAMTP--------------IGKETFFINNDKQKMNATQFSIWFKA 275
           + I +  +     K+L                     E  F++      +        K 
Sbjct: 250 SSIRIIGMGQELKKVLLAQKDYIEKLKLALGDDFAHPEMVFVSARGNYRDRNSVYQSLKR 309

Query: 276 KATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADRIR 330
                   + + H +R  +AT+  ++G     +    G   V+  A+ Y   AD +R
Sbjct: 310 FTKGTEFEDMTLHQLRHCNATMLLNSGIDLKVVSEHLGHCDVNVTADIY---ADVLR 363


>gi|296393822|ref|YP_003658706.1| integrase family protein [Segniliparus rotundus DSM 44985]
 gi|296180969|gb|ADG97875.1| integrase family protein [Segniliparus rotundus DSM 44985]
          Length = 444

 Score = 94.3 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 52/351 (14%), Positives = 110/351 (31%), Gaps = 56/351 (15%)

Query: 48  MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG 107
            + L  +  +        +   T+K   +++  S H  ++   +R  +E     +I + G
Sbjct: 56  RAFLANTQAEVSQGLYVHQNELTVKHACADWLSSRH--NIKPKTRSGYEQALMPVISQLG 113

Query: 108 DFDYRKITTKHIRSGVESRK--------------HTPSSA---IQFLTSMRVLFKWAVRQ 150
             + +K+  +HI + V + +              H P SA      L ++ ++ +    Q
Sbjct: 114 HLEVQKLAKRHIDTLVSALREGKVKRGEEGGAKFHKPWSARSVNYMLLTIGMVLEDLKEQ 173

Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210
             ++ N    V R K++      +T  + QQ  +   +  + R A+   L SGLR ++  
Sbjct: 174 GVLSRNVASLVTRIKQQRTVFTTFTAAETQQVLASIEQ-DRLRHAWHLAL-SGLRRAEIA 231

Query: 211 RAGVQHLQNNIFSI-------------------KTQKTGT--IITVELPDGFMKLLAMTP 249
                 +     ++                   KT+K+G    +T  L        A   
Sbjct: 232 GLRWDDVDLRAKTLTIKHTIVSVGGKAVEQDDGKTEKSGRTLPLTAPLLAELKAAKARQS 291

Query: 250 I----------GKETFFINNDKQKMNATQFSIWFKAKATK--AGVNKSAHGVRKFSATIS 297
                      G +    +   +  +    +  +               H  R    T+ 
Sbjct: 292 TEKLAFGPAYQGGDHVVCDEAGRLYHPDTLTSKWAQAVKAVPDVPKIRLHDARHTCGTLM 351

Query: 298 ADAGATAHELMATYGWKTVD-QAETYTKGA-DRIRLGIKNSRRISSVVDSD 346
              G     + A  G         TY     + +R       R+ ++ D +
Sbjct: 352 HLQGVPIAVISAWLGHADASFTMRTYVHSQPNALRDAALTLGRVVTICDKN 402


>gi|294785103|ref|ZP_06750391.1| hypothetical protein HMPREF0405_00446 [Fusobacterium sp. 3_1_27]
 gi|294486817|gb|EFG34179.1| hypothetical protein HMPREF0405_00446 [Fusobacterium sp. 3_1_27]
          Length = 351

 Score = 94.3 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 39/263 (14%), Positives = 90/263 (34%), Gaps = 18/263 (6%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFL 137
           Y+       +  ++  ++ + F++            I+   +++ +     T  S     
Sbjct: 80  YKLWLENKDVKKSTMKNYVTNFNR-SSILHKMQMNTISGLFLQNIINKANLTKGSLRNLK 138

Query: 138 TSMRVLFKWAVRQEYV-AIN-------PCLSVERPKRKTEGIRPWTKEDMQQF-KSFWSE 188
           +    ++ +A+  +     N       P   +ER  + +   R +T E+++    + + +
Sbjct: 139 SFWANIWDFALLNDLCSKKNYPKLLKLPS--IERGNKTSIRERIFTDEELEILWNNLYKD 196

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTII-TVELPDGFMKLL 245
             +       L Y+GLR  +     ++ +       +I   KT   I T+ + D  + L+
Sbjct: 197 KRKIVDIVLILCYTGLRIGELLNIKIKDIDLKEKTINITNSKTVNGIRTIPIHDKLLPLI 256

Query: 246 A-MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGAT 303
           +     G E  F   D +      F   F+       +   + H  R   AT+  +A   
Sbjct: 257 SNRMYKGNEYLFTTLDNKHYKYDSFDNHFRILCKNLKLKYHTLHDTRHTFATLLVNAKVN 316

Query: 304 AHELMATYGWKTVDQA-ETYTKG 325
              ++   G K      + Y   
Sbjct: 317 KEVIIKMIGHKRYKTTLDIYVHK 339


>gi|295396788|ref|ZP_06806923.1| tyrosine recombinase XerD [Brevibacterium mcbrellneri ATCC 49030]
 gi|294970372|gb|EFG46312.1| tyrosine recombinase XerD [Brevibacterium mcbrellneri ATCC 49030]
          Length = 312

 Score = 94.3 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 42/269 (15%), Positives = 83/269 (30%), Gaps = 24/269 (8%)

Query: 89  VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT---PSSAIQFLTSMRVLFK 145
                    Y   +    G  D   +T++H+   +E   H     +S  +   ++R L  
Sbjct: 41  DAYARDLAKYVTYLADT-GVNDLGSVTSEHVAGFIEHIAHQNFAVTSRARITVAVRRLHH 99

Query: 146 W-AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-------SEGSQPRLAFE 197
           + A        +P   V+ P       +  + + + +                +     E
Sbjct: 100 FTAGETG--GTSPADDVQPPTDTMRLPKALSVDQVSRIIHAAGDPQSADPAQLRAVALIE 157

Query: 198 FLLYSGLRCSDSCR---------AGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248
           FL  +G R S++           AG+  +       +    G+     L     +     
Sbjct: 158 FLYATGARISEAVGVDRDDVDVDAGIARVYGKGNKERLVPLGSHAIEALGAWLTRGRPAW 217

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHEL 307
                  F+N    +++        K  A  A V + +AH +R   AT   + GA    +
Sbjct: 218 AASSPAVFLNARGGRLSRQSAWAIVKKAAEIADVPRVTAHSLRHSCATHLVEGGADIRIV 277

Query: 308 MATYGWKTVDQAETYTKGADRIRLGIKNS 336
               G  +V   + YT+   +    +  S
Sbjct: 278 QELLGHSSVTTTQIYTQVTSQALKEVYAS 306


>gi|212709694|ref|ZP_03317822.1| hypothetical protein PROVALCAL_00742 [Providencia alcalifaciens DSM
           30120]
 gi|212687505|gb|EEB47033.1| hypothetical protein PROVALCAL_00742 [Providencia alcalifaciens DSM
           30120]
          Length = 377

 Score = 94.3 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 54/356 (15%), Positives = 114/356 (32%), Gaps = 46/356 (12%)

Query: 9   PFVTKERT-RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSA--LTGSTPKREYIN--- 62
           P + ++   R+GK+ + ++     R                 A  +      ++ ++   
Sbjct: 13  PNLYRKLDKRNGKVYWQYKHPLTGRFHSLGTDAEEAEQVAAQANVVIAEQQTKQILSIND 72

Query: 63  -----SPRKKPTTLKWLISEYRKS----AHWGSLAVNSRISFESYFDQIIRKSGDFDYRK 113
                  +K   ++   I +Y +        G L +NS        +   +  G    + 
Sbjct: 73  RLSNIKNKKIGISVSNWIDKYLEIQQERMDQGELKLNSYKQKIKPLNLFKQHCGMMSLKD 132

Query: 114 ITTKHIRSGVESRKHTPSS--AIQFLTSMRVLFKWAVRQEYVAI--NPCLSVERPKRKTE 169
           IT   +    +  K    +  A    + +  +FK A    +V    NP L+ ++P+ K +
Sbjct: 133 ITALEVVKITDEVKALGHNRMAQVVRSVIVDVFKEAQHVGHVPPGYNPALATKKPRSKVK 192

Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLA-FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
             R  + ++ +      +             L +G R  D  +     + + +  I+ +K
Sbjct: 193 RER-LSLDEWKAIYQQAAMHPHYLQHGMLLALITGQRLGDITKMKFSDVWDGMLHIEQEK 251

Query: 229 TGTIITVELP-------------DGFMKLLAMTP---IGKETFFINNDKQKMNATQFSIW 272
           TGT I + L                  + L ++P     + +         ++ T  +  
Sbjct: 252 TGTKIAIPLTLKCDAIEMTLGDVISMCRDLVVSPYLLHHRHSIARGKKGGAISNTSLTTA 311

Query: 273 FKAKATKAGVNKS------AHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           FK    K G+  S       H  R  S  I  + G          G ++    + Y
Sbjct: 312 FKNARNKCGITWSKGAEPTFHEQRSLSERIYREQGLDT---QRLLGHRSKVMTDNY 364


>gi|167751365|ref|ZP_02423492.1| hypothetical protein EUBSIR_02351 [Eubacterium siraeum DSM 15702]
 gi|167655611|gb|EDR99740.1| hypothetical protein EUBSIR_02351 [Eubacterium siraeum DSM 15702]
          Length = 391

 Score = 94.3 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 50/293 (17%), Positives = 94/293 (32%), Gaps = 40/293 (13%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           L   +  +       ++  ++  S+++   +QI    GD     +TT+ ++    + K  
Sbjct: 71  LGEWLDRWINEYMIFTIRESTLDSYKAMIKNQIKPYLGDRPLSALTTQELQKFYNTVKKK 130

Query: 130 PSS----------AIQFLTSMRVLFKWA----VRQEYVAINPCLSVERPKRKTEGIRPWT 175
                        A   +  + ++   A    VR   +  NP +    PK      +   
Sbjct: 131 GRVKADKLHGTELADSMVRGIHMMLHEALDMAVRLRLIVKNPTVGTTIPKNNYPPKQILN 190

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK------- 228
            E +++F     +  +    F   L +GLR  + C    +        +K ++       
Sbjct: 191 DEQLERFMQRIRQDERWYDFFYTELTTGLRRGEICGLKWEDFDAENGKLKVRRSVAKRKG 250

Query: 229 -----------TGTIITVELPDGFMKLLAMTPIGKET--FFIN--NDKQKMNATQFSIWF 273
                      TGT  T+ LP    +LL        +   F N    ++ M+        
Sbjct: 251 GGLNIGETKTETGTR-TIVLPPSTAELLRKRKETAVSEWIFPNIYEPEKPMHPDYAYHRL 309

Query: 274 KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTK 324
           K    +A +     H +R   AT +   G  A  L    G        +TYT 
Sbjct: 310 KTLLKQAELPLIRFHDLRHTFATHALAGGVDAKTLSGILGHTNASFTLDTYTH 362


>gi|327183903|gb|AEA32350.1| phage integrase family protein [Lactobacillus amylovorus GRL 1118]
          Length = 322

 Score = 94.3 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 41/292 (14%), Positives = 106/292 (36%), Gaps = 17/292 (5%)

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121
           + P KK  + +  ++++ ++      +  +   ++   +Q++RK  D   RK+TT+ +R 
Sbjct: 35  DEPEKKKISNQEYLTKFLEAKKIEGCSERTIKYYKVTVEQLLRKVLD-PIRKVTTEQMRE 93

Query: 122 GVESRKH----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
            +   +       ++      ++   F W   ++Y+  +P   + + + +       T E
Sbjct: 94  YLVDYQKINNCGKTTIDNVRRNISSFFSWLEEEDYILKSPMRRIHKIRAEKLVKNVITDE 153

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVE 236
           D+++ +       +     + L  +G+R  +  R     +  +    +   K      V 
Sbjct: 154 DIERLRDGCDC-LRDVAMIDLLYSTGIRVGELVRLNRSDINFSERECVVFGKGDKERRVY 212

Query: 237 LPDG----FMKLLAMTPIGKETFFINNDKQKMNA---TQFSIWFKAKATKAGVNK-SAHG 288
                    +  L          F++ D +  +    +   I  +    K  +++   H 
Sbjct: 213 FDAKSKIHLINYLKSRTDANPALFVSLD-RPYSRLKISGVEIRLRQLGRKLNLDRVHPHK 271

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
            R+  AT + D G    ++    G   +D    Y    ++  +   + + IS
Sbjct: 272 FRRSMATRAIDKGMPIEQVQKILGHSQIDTTMQYA-IVNQNNVKAAHRKYIS 322


>gi|241992607|gb|ACS73659.1| IntI1 [uncultured bacterium]
          Length = 315

 Score = 94.3 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 42/306 (13%), Positives = 93/306 (30%), Gaps = 62/306 (20%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129
           ++ + R+   +   ++ +  ++  +    IR  G      + +  + + +      RK +
Sbjct: 16  VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75

Query: 130 PSSAIQFLTSMRVLFK--WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            S+  Q L ++   +         ++       + RP+         T +++ +   F  
Sbjct: 76  VSTHRQALAALLFFYGKVLCTDLPWLQ-----EIGRPRPSRRLPVVLTPDEVVRILGFL- 129

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
           EG   RL  + L  +G+R S+  +  V+     +    ++  K      + LP+     L
Sbjct: 130 EGEH-RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSL 188

Query: 246 AMTPIGKETFFINN---------------------------------------------D 260
                    +++ +                                              
Sbjct: 189 REQLSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWLWVFAQHTHSTDPRSGVVR 248

Query: 261 KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           +  M    F   FK    +AG+ K  + H +R   AT    +G     +    G   V  
Sbjct: 249 RHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVST 308

Query: 319 AETYTK 324
              YT 
Sbjct: 309 TMIYTH 314


>gi|262202503|ref|YP_003273711.1| integrase family protein [Gordonia bronchialis DSM 43247]
 gi|262202582|ref|YP_003273790.1| integrase family protein [Gordonia bronchialis DSM 43247]
 gi|262085850|gb|ACY21818.1| integrase family protein [Gordonia bronchialis DSM 43247]
 gi|262085929|gb|ACY21897.1| integrase family protein [Gordonia bronchialis DSM 43247]
          Length = 608

 Score = 94.3 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 48/274 (17%), Positives = 88/274 (32%), Gaps = 31/274 (11%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYR-----KITTKHIRSGVESRKHTPS--------- 131
           SL  N+    E    +      D   +     ++   HI    +    TP+         
Sbjct: 225 SLRPNTVTGIEHDLRRFGSWLTDTHPQIANCAELQRVHIEEFKKWLSTTPTPRTGKPLNR 284

Query: 132 -SAIQFLTSMRVLFKWAVRQEY--VAINPCLSV-ERPKRKTEGIRPWTKEDMQQFKSFWS 187
            S    L ++   F      +Y    + P + + + P       R        +      
Sbjct: 285 VSIKNALINLHCFFDRITDWDYPNAPVRPLVFIGDLPIIDKPLPRFLDDGAATKLLRAAR 344

Query: 188 EGSQP--RLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDGF 241
             + P  RL  E L  +G+R S+        +          I   K      + L    
Sbjct: 345 ADTDPLSRLIVELLARTGIRISELLGLTTDAVVQIGTAFWLRIPLGKMHNDRYIPLHPQL 404

Query: 242 MKLLA-----MTPIG-KETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSA 294
            +LL        P G + +  +  + + + + + +      A  AG+   +AH +R   A
Sbjct: 405 KELLDDWIDNHRPTGIRTSRLLVENHRPITSHRVTAALDRHAEAAGIGHVTAHQLRHTLA 464

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           T + + G +   + A  G KT+     Y + ADR
Sbjct: 465 TQAINRGMSLDAIAALLGHKTLAMTMVYARIADR 498


>gi|220683968|gb|ACL80790.1| IntIA [Vibrio tasmaniensis]
          Length = 324

 Score = 94.3 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 48/312 (15%), Positives = 102/312 (32%), Gaps = 62/312 (19%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----SR 126
               I EY  + H+   A+ +  ++  +  Q I        + +T++H+   +      +
Sbjct: 6   FLAYIQEYMLARHY---ALRTTKAYIYWIHQYILYHDKKHPKSLTSRHVEDFLTHLVIDK 62

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
           K    +    L ++  L+K  + QE + ++  +   R  +  +     T E++ +F +  
Sbjct: 63  KLAQKTQSLALNALVFLYKE-IIQEPIELD--MQFRRSDKSRKLPTVMTPEEIGRFFNHC 119

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKL 244
           S   +  L ++ +  SGLR  +  R  +Q +  +  S++    K G    V +       
Sbjct: 120 SPNFK--LPYQLMYGSGLRLMECLRLRMQDIDYDYKSVRVWQGKGGKNRIVTIAPELFPA 177

Query: 245 LAMT-------------------------------------------PIGKETFFINN-- 259
           + +                                            P  +    +    
Sbjct: 178 IKLQQQKSAEYHQQDIHDEAFSGVYLPDSLAKKYPSAERSLNWQFLFPSARLAPDLRTGV 237

Query: 260 -DKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTV 316
             +  ++ T      K  + KA + K    H +R   AT    +GA    +    G   +
Sbjct: 238 LRRHHIHPTALQKHIKVASQKADIEKDISCHTLRHSFATHLLQSGADIRTVQEQLGHADL 297

Query: 317 DQAETYTKGADR 328
              + YT   DR
Sbjct: 298 KTTQIYTHIIDR 309


>gi|148455782|gb|ABQ65129.1| IntI1 [Pseudomonas aeruginosa]
          Length = 337

 Score = 94.3 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 42/306 (13%), Positives = 93/306 (30%), Gaps = 62/306 (20%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129
           ++ + R+   +   ++ +  ++  +    IR  G      + +  + + +      RK +
Sbjct: 16  VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75

Query: 130 PSSAIQFLTSMRVLFK--WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            S+  Q L ++   +         ++       + RP+         T +++ +   F  
Sbjct: 76  VSTHRQALAALLFFYGKVLCTDLPWLQ-----EIGRPRPSRRLPVVLTPDEVVRILGFL- 129

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
           EG   RL  + L  +G+R S+  +  V+     +    ++  K      + LP+     L
Sbjct: 130 EGEH-RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSL 188

Query: 246 AMTPIGKETFFINN---------------------------------------------D 260
                    +++ +                                              
Sbjct: 189 REQLSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVR 248

Query: 261 KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           +  M    F   FK    +AG+ K  + H +R   AT    +G     +    G   V  
Sbjct: 249 RHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVST 308

Query: 319 AETYTK 324
              YT 
Sbjct: 309 TMIYTH 314


>gi|253565833|ref|ZP_04843287.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|251944937|gb|EES85375.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
          Length = 408

 Score = 94.3 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 53/323 (16%), Positives = 112/323 (34%), Gaps = 40/323 (12%)

Query: 43  FIPAYMS-ALTGST-PKREYINSPRKKPTTLKWLISEYRKSAHW------GSLAVNSRIS 94
           F   Y    L G     R  +N  + K  T K L + +++             A  +   
Sbjct: 80  FYQIYQDLELEGKIISARAIVNRYQGKDETFKTLYNVFKEHNDNCRKLIGTDYADITVRR 139

Query: 95  FESYFDQIIR------KSGDFDYRKITTKHIRSGVESRKH----TPSSAIQFLTSMRVLF 144
           +++    ++       K  D   R++  + +R      K       ++ I+++   + + 
Sbjct: 140 YDNCLKYLMELVKRDYKVDDMLLREVNGELVRKFDLYLKTEKHCAQNTVIRYMKCFKKVI 199

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF---KSFWSEGSQPRLAFEFLLY 201
             A+  E++  NP   ++  + +    +  ++ ++ +    +         R  F F +Y
Sbjct: 200 NLAIANEWLTKNPFAGIKFHEVEVNK-QFLSQAEINRIWQKEFRIERLELVRDVFIFCVY 258

Query: 202 SGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVELPDGFMKLLAMTP-----IG 251
           +GL   D      +H+  +           +KT  +  + L     ++L         + 
Sbjct: 259 TGLAFIDVYNLRPEHISEDSNGNLWIVKPREKTNNLCNIPLLSISKQILEKYKDNPYCMD 318

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG-ATAHELM 308
           K T       QKMN+     + K  A   G+ K  + H  R   A++ A A   +   + 
Sbjct: 319 KGTLLPVPCNQKMNS-----YLKEIADLCGIKKNLTTHTARHSFASVIALANNVSLPNVA 373

Query: 309 ATYGWKTVDQAETYTKGADRIRL 331
              G  +    + Y K  D+  L
Sbjct: 374 KMLGHSSTRMTQHYAKVLDQTIL 396


>gi|220683973|gb|ACL80794.1| IntIA [Vibrio splendidus]
          Length = 324

 Score = 94.3 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 47/311 (15%), Positives = 98/311 (31%), Gaps = 60/311 (19%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
               I EY    H+   A+ +  ++  +  Q I        R +T++H+   +       
Sbjct: 6   FLAYIQEYMLGRHY---ALRTTQAYIYWIHQYILYHDKKHPRSLTSRHVEDFLTHLVVDR 62

Query: 131 SSAIQFLTSMRVLFKWAVR---QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            SA +  +       +  +   QE + ++  +   R  +  +     T E++ +F +  S
Sbjct: 63  KSAQKTQSLALNAIVFLCKEIVQEPIELD--MQFRRSDKSRKSPTVMTPEEIGRFFNHCS 120

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLL 245
              +  L ++ +  SGLR  +  R  +Q +  +  S++    K G    V +       +
Sbjct: 121 PNFK--LPYQLMYGSGLRLMECLRLRMQDIDYDYKSVRVWQGKGGKNRIVTIAPELFPAI 178

Query: 246 AMTPIGKETFFINN---------------------------------------------- 259
            +       ++  +                                              
Sbjct: 179 KLQQQKSAEYYQQDIHDKAFSGVYLPDSLAKKYPSAERSLNWQFLFPSARLAPDLRTGEL 238

Query: 260 DKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVD 317
            +  ++ T      K  + KA + K  S H +R   AT    +GA    +    G   + 
Sbjct: 239 RRHHIHPTALQKHIKVASQKADIEKNISCHTLRHSFATHLLQSGADIRTVQEQLGHTDLK 298

Query: 318 QAETYTKGADR 328
             + YT   DR
Sbjct: 299 TTQIYTHIIDR 309


>gi|182420352|ref|ZP_02951578.1| integrase/recombinase, phage integrase family [Clostridium
           butyricum 5521]
 gi|237668584|ref|ZP_04528568.1| integrase/recombinase, phage integrase family [Clostridium
           butyricum E4 str. BoNT E BL5262]
 gi|182375796|gb|EDT73391.1| integrase/recombinase, phage integrase family [Clostridium
           butyricum 5521]
 gi|237656932|gb|EEP54488.1| integrase/recombinase, phage integrase family [Clostridium
           butyricum E4 str. BoNT E BL5262]
          Length = 333

 Score = 94.3 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 42/256 (16%), Positives = 92/256 (35%), Gaps = 11/256 (4%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE--SRKHTPSSAIQ 135
           Y        L+  +  +++ +  ++           I+T  +R  +    +    S+   
Sbjct: 65  YLACKKLEGLSSKTLYNYKLFLIKLNMYF-TKPVSTISTMDLRMFLAVLGKGKQASTTNG 123

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195
           ++T ++  F W   +EY+  NP   +++ K     ++ +  E++++ +       + +  
Sbjct: 124 YITYLKNFFGWLQNEEYILKNPAAKLKQTKVPKVILQGYKAENLEKLREAC-VTEKQKCL 182

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE- 253
           FE L  +  R S+     ++ +       I T K      V         L     G+E 
Sbjct: 183 FELLDSTACRISEIDEIKIEDINWQEQSIIVTGKGNKQRVVYFSTKAKLHLKAYITGREE 242

Query: 254 -TFFIN--NDKQKMNATQFSIWFKAKATKAGVNKSAHG--VRKFSATISADAGATAHELM 308
              F++     Q +      +       KAGV +  H    R+  AT   ++G T   + 
Sbjct: 243 GHVFVSDKAPHQHIGVRALQLIVAKIKEKAGVTEKVHCHKFRRTQATYLLNSGMTIQGVQ 302

Query: 309 ATYGWKTVDQAETYTK 324
              G  + D  + Y +
Sbjct: 303 KILGHTSPDVTQRYAQ 318


>gi|317501739|ref|ZP_07959926.1| phage integrase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|316896861|gb|EFV18945.1| phage integrase [Lachnospiraceae bacterium 8_1_57FAA]
          Length = 350

 Score = 94.3 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 50/296 (16%), Positives = 93/296 (31%), Gaps = 30/296 (10%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           I  Y +      L  NS  + +   +  I+   G     +IT   I     + +    S 
Sbjct: 62  IQVYFEDKK-NELKENSIRNKQHMMNKHIVPYFGTRKMNEITPAEIIQWQNTIQEKGYSK 120

Query: 134 IQ---FLTSMRVLFKWAVRQEYVAINPCLSVER-PKRKTEGIRPWTKEDMQQFKSFWSEG 189
                    +  LF  A +   +  NPC  V++  K     +  WTK +  +F +    G
Sbjct: 121 TYERMIQNQLNALFNHAQKIYNLKENPCKKVKKMGKSDANKLEFWTKAEYDRFIAGIEPG 180

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ-------------KTGTII- 233
           S+  L FE L ++G+R  +     +       N+  I                KT   + 
Sbjct: 181 SEDYLIFEILFWTGIREGELLALSLLDFDMSGNLLHINKTYNRIRKRDVIDTPKTENSVR 240

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKF 292
           T+++P+   + +         F  +     + A       K       V     H +R  
Sbjct: 241 TIDIPNFLKEEVQEYAKKHYGFPEDQRLFPIVARTLQKRLKKYEALTSVKPIRVHDIRHS 300

Query: 293 SATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVVDSDD 347
                   G     +    G K +     TY        L     ++++ ++D+  
Sbjct: 301 HVAYLIYQGVEPLIIKERLGHKDIQMTLNTYGH------LYPSQQKKVAEMLDNKR 350


>gi|319945012|ref|ZP_08019274.1| phage integrase family site-specific recombinase [Lautropia
           mirabilis ATCC 51599]
 gi|319741582|gb|EFV94007.1| phage integrase family site-specific recombinase [Lautropia
           mirabilis ATCC 51599]
          Length = 396

 Score = 94.3 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 55/358 (15%), Positives = 121/358 (33%), Gaps = 34/358 (9%)

Query: 10  FVTKERTRHGKIIYYFR-KGHGRRIRLPYPHEST---------FIPAYMSALTGSTP--K 57
            +  E    G I++ +R +  G+R +L                +  A      G +P  K
Sbjct: 25  GLYVEVLPSGSIVWRYRYRLDGKREKLTLGKYPALTLKNARLKWDEAAHQVAMGESPAKK 84

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITT 116
           ++       + TT+      + K          +      Y ++ I+   G    R IT 
Sbjct: 85  KQQEKVSGAENTTVVDFAERFFKDIQSRDRKDVTMP--RRYLEKDILPHIGSKPVRDITA 142

Query: 117 KHIRSGVESRKHTP--SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER--PKRKTEGIR 172
           + +R+ +  +K     ++A Q    ++ +F +A+    +  NP +++      R     R
Sbjct: 143 EDVRNVIWRKKEQGFDAAAGQVRGLLKRMFDYALTCGLIQANPVMALPMRHVYRAAARDR 202

Query: 173 PWTKEDMQQFKSFWSEGSQPR---LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK---- 225
             T ++++ F       +  R   +AF+ +L + +R S+   A  + +  N         
Sbjct: 203 ALTPDEIKLFLRAMQTSNIRRQFKIAFQLILMTLVRKSELMLAQWKDVHVNEGEWHIPVE 262

Query: 226 TQKTGTIITVELP---DGFMKLLAMTPIGKETFFINNDK--QKMNATQFSIWFKAKATKA 280
             KTG +  V L        K L       +          +       +   K      
Sbjct: 263 NSKTGKLHIVYLSTQAQTLFKELKPLASSSDWVLPGRGTLAKPFANNALNQALKVSLQGQ 322

Query: 281 GVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG--ADRIRLGIKN 335
            +   + H +R+ ++T+  + G  +  +              Y +   A++ R  ++ 
Sbjct: 323 EIPAFTIHDLRRTASTLLHEQGWPSDVVEKALNHTIGGVRGVYNRAEYAEQRREMLQA 380


>gi|295691144|ref|YP_003594837.1| integrase family protein [Caulobacter segnis ATCC 21756]
 gi|295433047|gb|ADG12219.1| integrase family protein [Caulobacter segnis ATCC 21756]
          Length = 309

 Score = 94.3 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 44/271 (16%), Positives = 90/271 (33%), Gaps = 32/271 (11%)

Query: 85  GSLAVNSRISFE----SYFDQIIRKSGDF----DYRKITTKHIRSGVESRKHT-----PS 131
              +  +  ++     +Y + +    G+        +I+   +R  +  R+       P 
Sbjct: 23  RRASPRTVRAYGDNVLAYLNFLENHRGEALSVAALGEISAADLRGYLAFRRQGENALAPR 82

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLS-VERPKRKTEGIRPWTKEDMQ--QFKSFWS- 187
           S  Q L+S+R   ++ V Q +   N  +  V  P+ K    RP +++  +   F++    
Sbjct: 83  SISQALSSIRAFHRY-VDQRHGVANAAIGLVRGPRLKIGLPRPVSEDQARDLIFEASGDT 141

Query: 188 -----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
                E ++       L   GLR S++       +        T K G      + D   
Sbjct: 142 EREPWETARDEAVLTLLWGCGLRISEALSLTWSDVPLGAALRITGKGGKTRIAPVLDAVR 201

Query: 243 KLLAMTPIG-------KETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293
           + +A+            E  F       ++        +    + G+    + H  R   
Sbjct: 202 EAVAVYADELPFVLGPDEPLFRAKRGGPLSPRHVQALVQTLRGRLGLSDRVTPHAFRHAF 261

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324
           AT    AGA    +    G  ++   + YT+
Sbjct: 262 ATHLLGAGADLRTIQELLGHASLSTTQRYTQ 292


>gi|238020439|ref|ZP_04600865.1| hypothetical protein GCWU000324_00320 [Kingella oralis ATCC 51147]
 gi|237867419|gb|EEP68425.1| hypothetical protein GCWU000324_00320 [Kingella oralis ATCC 51147]
          Length = 336

 Score = 94.3 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 42/243 (17%), Positives = 84/243 (34%), Gaps = 14/243 (5%)

Query: 92  RISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMRVLFKWA- 147
           + S  S   ++    G    + + +   R+ +++    P   S+  ++L  +R +   A 
Sbjct: 36  KKSIRSDIGRLRA-LGALRGKDLASLDRRTIMQTVIALPCGNSTKNRYLALIRAILNKAA 94

Query: 148 VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-EGSQPRLAFEFLLYSGLRC 206
              E++   P   +   +   + IR     + Q+     +   +       F L +GLR 
Sbjct: 95  REWEWLDHAP--RLTLYQEPKKRIRWLKPAEAQKLLDVLAQRHTLLHDLAAFSLATGLRQ 152

Query: 207 SDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ 262
            +      + +         +    K G  I V L    + +L          F  N+ +
Sbjct: 153 RNVLELKWEQIDIQRRTAWINADQTKGGQAIGVPLNQTALHILQQQKRCAVYVFTQNNGK 212

Query: 263 KMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
           K+++    IW K    +AG+ +   H +R   A+     G     L    GW+     E 
Sbjct: 213 KLHSISSRIW-KDCLKEAGIHDFRWHDLRHTWASWLIQRGVPIAVLKEMGGWENAKMVER 271

Query: 322 YTK 324
           Y  
Sbjct: 272 YAH 274


>gi|169795355|ref|YP_001713148.1| putative integrase/recombinase protein [Acinetobacter baumannii
           AYE]
 gi|169148282|emb|CAM86147.1| putative integrase/recombinase protein [Acinetobacter baumannii
           AYE]
          Length = 339

 Score = 94.3 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 45/288 (15%), Positives = 96/288 (33%), Gaps = 28/288 (9%)

Query: 48  MSALTGSTPKREYINSPR--KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK 105
            +A+     K   +   +  K P   K L  +Y        + + S+    +  D + R 
Sbjct: 37  WAAMKLLELKSGKVQEEKGIKTPYPFKMLCEKYYAE---KGIKLRSKHVIRNKLDNLERI 93

Query: 106 SGDFDYRKI---TTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQE-YVAINPCL 159
            G+   + I       I      R  +    + +   +    +F +A ++   +  N   
Sbjct: 94  VGELASKSIYDFKPSDIARWRNKRVLEVKNGTVLYEFSIFSSIFTYAQKELFLIESNVWQ 153

Query: 160 SVERPKRKTEGIRPWTKEDMQQFK--SFWSEGSQPRL-------AFEFLLYSGLRCSDSC 210
           +V +P++     +  T +D ++    + W + + PR        A  F L + +R  +  
Sbjct: 154 NVIKPEKGKSRSQRITFDDQEKILQQAKWDKNNPPRFVKHYVCWAMLFALETAMRQGEIL 213

Query: 211 RAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS 270
               + +++    +   K G    V L     +LL++ P   +          + A  F 
Sbjct: 214 GMRREDIKDGFVHLPMTKNGESRNVPLSKEAKRLLSLLPSNTDILL------PVKAETFK 267

Query: 271 IWFKAKATKAGVNK-SAHGVRKFSATIS-ADAGATAHELMATYGWKTV 316
             +      A +   + H  R  + T    +       L    G KT+
Sbjct: 268 RTWIKIRDAADLKHINFHDTRHEAITRMVRERKLPVEVLAKITGHKTI 315


>gi|124010561|ref|ZP_01695187.1| tyrosine recombinase XerD [Microscilla marina ATCC 23134]
 gi|123982265|gb|EAY23838.1| tyrosine recombinase XerD [Microscilla marina ATCC 23134]
          Length = 299

 Score = 94.3 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 40/279 (14%), Positives = 86/279 (30%), Gaps = 41/279 (14%)

Query: 83  HWGSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGVESRKHTPS-------S 132
                A ++   +          + ++G  D   +    +       +  PS       S
Sbjct: 21  RTLGYAPDTCRKYPRQLREFLHFLEETGIVDLSSVDGAVVECFFTYLQSRPSIKTGKSLS 80

Query: 133 AIQFL---TSMRVLFKWAVRQEYVAINPCLSVERPKRKT---EGIRPWTKEDMQQFKSFW 186
               L    ++R   ++          P  ++ R + +    + +  +++ ++    +  
Sbjct: 81  TTHLLSMQKTLRQFTRYLDALGL----PGFALPRLRLQGLAAQSLEVFSQAEIDGLYAAC 136

Query: 187 SE---GSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGF 241
                G + +         GLR ++  +  V   H +     +K  K     +V +P   
Sbjct: 137 GTDFYGLRDQALLALGYGCGLRRAEVSQLEVSDLHFKKGWLEVKAGKGAKARSVPMPTKV 196

Query: 242 MKLL--------AMTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGV------NKS 285
              L        A  P    T    ++    +++    SI F+    KA +        S
Sbjct: 197 AAYLYRYVYQARAQLPQSGTTPALLLSWRATRLSKQMVSIRFRELVIKAELLSSEDKRTS 256

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            H +R   AT    AG +   +    G  ++D    YT 
Sbjct: 257 FHCLRHSIATHLHAAGVSLANIALFLGHSSLDSTRIYTH 295


>gi|325001053|ref|ZP_08122165.1| integrase family protein [Pseudonocardia sp. P1]
          Length = 297

 Score = 93.9 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 48/276 (17%), Positives = 102/276 (36%), Gaps = 28/276 (10%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVES---- 125
            L++ +  S      + N+R ++            + G  D  ++   HI   + +    
Sbjct: 3   QLVAAFLLSCR----SANTRRAYTRDIRDFHTWCAQHG-LDLLEVRRVHIDGYIAALATP 57

Query: 126 -----RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP--WTKED 178
                R   P++  + L+++  L+ +A  + Y+  +P   VERP+   +         E 
Sbjct: 58  QPRTGRPAAPATVARKLSALAGLYDYAAAEGYLPGSPLTRVERPRVGDDSQTTGLDRDEL 117

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK---TQKTGTIITV 235
            +   +  ++G++       L ++GLR +++    V+HL            +K G   TV
Sbjct: 118 RRLLAAAAADGTRSHALMLLLAHNGLRINEALSRDVEHLDTERGHQVLRLRRKGGRGATV 177

Query: 236 ELPDGFMKLLAMTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGVNKS----AHGV 289
            L       +A    G+ T   FI    ++++        +  A  A + ++     H +
Sbjct: 178 PLSAPVAHAIATYLDGRPTGPIFITRTGRRLDEPAAWRLIRRLARYAELPQADRINPHTL 237

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           R    T + DAG +  ++    G         Y + 
Sbjct: 238 RHAFVTAALDAGVSLRDVQDGAGHSDPRTTRRYDRA 273


>gi|262382327|ref|ZP_06075464.1| integrase [Bacteroides sp. 2_1_33B]
 gi|262295205|gb|EEY83136.1| integrase [Bacteroides sp. 2_1_33B]
          Length = 310

 Score = 93.9 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 48/303 (15%), Positives = 103/303 (33%), Gaps = 41/303 (13%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTK---HIRSGVESRKH 128
            I+  R+   +     +S  S++   +  +R  G     Y +I  +     +  +  R+ 
Sbjct: 13  YIARLREQGRY-----SSAKSYQDALNSFLRFCGQEVIPYTRIDREMLLRYQDYLRDREC 67

Query: 129 TPSSAIQFLTSMRVLFKWAVRQE------YVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           + ++   ++  +R ++  A+         Y+     + V+  ++K         E ++  
Sbjct: 68  SWNTVSTYMRRIRRVYGLAMENGEAPFSRYLFKGIFMGVKSKQKK-----ALPTESLRLL 122

Query: 183 KS--FWSEGSQ--PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
            +      G +   R      L+ G+   D        ++N +     QKTGT + VE+ 
Sbjct: 123 MTAPLDDSGLRKTQRALCLMFLFCGMAFVDFAHLKKSDIRNGVLRYNRQKTGTPMLVEIQ 182

Query: 239 DGFMKLLAM----TPIGKETFFINNDKQKMNATQFS----------IWFKAKATKAGVNK 284
               +LLA     T       F      K     F              K  A   GV +
Sbjct: 183 PVAKELLAALMTGTLRDSPYLFTFLSGTKTGEEAFREYTSALADFNSSLKELANACGVTE 242

Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
             +++ +R   AT   + G     +    G +++   + Y K     ++   N     S+
Sbjct: 243 MVTSYSIRHSFATTLKEQGVPIEMISELLGHQSIKTTQIYLKSFSLDKMSAVNKACFESI 302

Query: 343 VDS 345
            ++
Sbjct: 303 YNN 305


>gi|153821974|ref|ZP_01974641.1| integrase [Vibrio cholerae B33]
 gi|229508872|ref|ZP_04398363.1| integrase [Vibrio cholerae B33]
 gi|126520513|gb|EAZ77736.1| integrase [Vibrio cholerae B33]
 gi|229354147|gb|EEO19079.1| integrase [Vibrio cholerae B33]
          Length = 385

 Score = 93.9 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 53/328 (16%), Positives = 99/328 (30%), Gaps = 31/328 (9%)

Query: 29  HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLA 88
              R      H    +    +  +    + E      +  T L     +Y  S    S A
Sbjct: 48  DKPRSPAEREHNKEALRIAEAVRSKRLLESETSKHKLEDRTKLSASFFDYYDSVT-DSKA 106

Query: 89  VNSRISFESYFD---QIIRKSG--DFDYRKITTKHIRSGV----------ESRKHTPSSA 133
             S+ ++  +      + R  G  +  +  I    +                +  + ++ 
Sbjct: 107 SGSKSNYSIWVSAGHHLRRYHGRAELTFEDIDRAFLEGFKTYLLKSATTKSDQLLSRNTV 166

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
             +   +R     A ++  +  NP  +V+  K +T      T E+++            +
Sbjct: 167 SSYFNKIRAALNQAYQEGIIRDNPVRTVKSVKPETNQRVYLTLEEIKAMAKAECRYDVLK 226

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQN-----NIFSIKTQK----TGTIITVELPDGFMKL 244
            AF F   +GLR SD  +     ++           K +K       +  ++LPD  ++L
Sbjct: 227 RAFLFSCTTGLRWSDIQKLVWSEVEEFEQGHFRIIFKQKKIQNRGTALQYLDLPDSAVRL 286

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302
           +       E  F               W    A  AG+ K  + H  R   A      G 
Sbjct: 287 MGERKDNDERVFKALRYSSYTNVALLHW----AMLAGITKHVTFHAGRHSFAVNQLARGL 342

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIR 330
             + L    G   +   E Y    D+ R
Sbjct: 343 DIYSLSRLLGHSELKTTEIYADILDQRR 370


>gi|152976339|ref|YP_001375856.1| phage integrase family protein [Bacillus cereus subsp. cytotoxis
           NVH 391-98]
 gi|152025091|gb|ABS22861.1| phage integrase family protein [Bacillus cytotoxicus NVH 391-98]
          Length = 376

 Score = 93.9 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 43/304 (14%), Positives = 98/304 (32%), Gaps = 30/304 (9%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHT 129
              L+  + +         ++   ++     +++ + GD     I    + +  +     
Sbjct: 63  FSQLVEIWMQEKETTC-RPSTLYQYKRILRSRVMPEFGDKKLSNIKPLTVHNFHQKMIKE 121

Query: 130 PSSAIQFLTS---MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             +     +    ++ +    V  E ++ NP    +RPK K +    WT E    F    
Sbjct: 122 GLTTKYISSVDVMLKQILDKGVELEMISSNPAKKAKRPKVKKKAQASWTIEQAMTFIDCA 181

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT------------ 234
                  +AF   L++G+R  +        +     +I  Q+T T++             
Sbjct: 182 KLKGSYYIAFVLALHTGMRIGEVLALQWGDIDFEKKTIHVQRTLTLVDGKYVLGETKTEA 241

Query: 235 ----VELPDGFMKLLAMTPIGK-----ETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284
               + + +  +  L      K     +      +K+ ++        KA      V   
Sbjct: 242 SNRVIPMTEELVDELVEYQKYKKENPLDLLICTRNKKIVHPYTIRYQMKALCEAIDVPYI 301

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVV 343
             H +R+   TI  D+   A  +    G   V  +   YT   +  +  I+ + ++ + +
Sbjct: 302 RFHDIRRTFTTILIDSNVNAKVVAKLLGHTNVSTSLNIYTDVYEERQ--IEAAEKLQNAL 359

Query: 344 DSDD 347
            S  
Sbjct: 360 KSGR 363


>gi|326333337|ref|ZP_08199584.1| phage-related integrase [Nocardioidaceae bacterium Broad-1]
 gi|325948981|gb|EGD41074.1| phage-related integrase [Nocardioidaceae bacterium Broad-1]
          Length = 421

 Score = 93.9 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 43/290 (14%), Positives = 91/290 (31%), Gaps = 41/290 (14%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR-KH 128
              L+  +        LA  ++  +       I+     F   ++TT  + + + ++   
Sbjct: 75  FTTLVERWDADLETKELADGTKDHYRDQVRLYIMPAFEHFTLAELTTGRVEALLNAQEAD 134

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-- 186
           +PS A +  T + +LF +A+R + +  NP     R +      +  T E + + +     
Sbjct: 135 SPSRARKTRTVLNLLFGYALRHDAINRNPVQGTSRLRAVKNKPKALTLEQVSKIREAAAN 194

Query: 187 ----------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN--------IFSIKTQK 228
                         Q R   E LL + +R  +        + +           ++  +K
Sbjct: 195 WRTQPGLPGPKPDGQVRDIIEILLGTAMRPGEVLALRPCDITDGPAGMIAAVTGTVVQRK 254

Query: 229 TG------------TIITVELPDGFMKLLAMTPIG---KETFFINNDKQKMNATQFSIWF 273
                         +   V +P+    ++     G   + T F       +        F
Sbjct: 255 KKGTFRQERPKTDSSNRLVPVPEFAAAVIRRRLRGVPTERTIFAGRTGGPLVPPNVRRTF 314

Query: 274 KAKATKAGVNKSAHGV---RKFSATISADAGATAHELMATYGWKTVDQAE 320
           +     AG+  S   +   R+  AT+ A  G  +       G  +    E
Sbjct: 315 REFLVDAGLGDSGISLRWYRRTGATVIA-RGMDSDAAATFLGHTSSAITE 363


>gi|21716073|ref|NP_663635.1| putative integrase [Lactococcus phage ul36]
 gi|21700236|gb|AAM75749.1| putative integrase [Lactococcus phage ul36]
 gi|89212524|gb|ABD63636.1| putative integrase [Lactococcus phage ul36.k1]
 gi|89212585|gb|ABD63696.1| putative integrase [Lactococcus phage ul36.k1t1]
 gi|89212637|gb|ABD63747.1| putative integrase [Lactococcus phage ul36.t1]
 gi|89212690|gb|ABD63799.1| putative integrase [Lactococcus phage ul36.t1k1]
          Length = 359

 Score = 93.9 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 40/338 (11%), Positives = 107/338 (31%), Gaps = 28/338 (8%)

Query: 13  KERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR-KKPTTL 71
             + ++G   Y F+   G++       E +       A       +E I++P  K   T 
Sbjct: 5   AYKKKNGTTAYKFKAYIGKKNGKSQYAEKSGFKTKADARAALHNIQEEIDNPTPKSAMTF 64

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
           K L  E+               +  ++   ++   G       T   +++          
Sbjct: 65  KELYDEWLLVYEKEVQNSTYYKTTRAFEKHVLPVIGSTKLSDFTPMELQNFRNDLSEKLK 124

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPC-----LSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            A +    +R +F  A    Y+  NP        +++   + +       ++++ F +  
Sbjct: 125 FARKLFGMVRKVFNHAALLSYIQANPAAPVTSQGIKKKVEEKKDFY--DTDELRDFMALV 182

Query: 187 SEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
            + +  +    F  L ++G+R  +      +  + +   I    + + +  E+       
Sbjct: 183 EKTNDIKKIALFRILAFTGIRKGELLALEWKDYRKSTLDINKAISHSPVGYEILPPKANS 242

Query: 245 LAMTPIGKET----------------FFINNDKQKMNATQFSIWFKAKATKAGV-NKSAH 287
             +  + ++T                 F + +   ++ ++   W      +  +     H
Sbjct: 243 NRLLSLDEKTCKILDELHQTYPESTRIFESENGGMLSPSKPRKWLLEITKEKEIEPIRIH 302

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTK 324
             R   A++  ++G +  ++    G   +      YT 
Sbjct: 303 AFRHTHASLLFESGMSLKQVQYRLGHADLKTTMNIYTH 340


>gi|301162189|emb|CBW21734.1| putative bacteriophage integrase [Bacteroides fragilis 638R]
          Length = 368

 Score = 93.9 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 48/244 (19%), Positives = 89/244 (36%), Gaps = 20/244 (8%)

Query: 105 KSGDFDY---RKITTKHIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPC 158
             GD +    +K     + +      + P   +SA  + ++ R L K A R ++   N  
Sbjct: 127 TFGDVNVDLCKKFREYLLNAKQLKHSNRPMSLNSASGYYSTFRGLLKIAYRDKWFRENIN 186

Query: 159 LSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL- 217
             +++ + +       T  +++Q  +   +    + A  F   +GLR SD      +   
Sbjct: 187 DYLDKIEPQDVKKEYLTLNEVKQLAATPCDIPVLKAASLFACLTGLRISDILNLQWEDFT 246

Query: 218 ----QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF 273
               Q     I+TQKT T  T+ +     + L  TP   + F      + +  +  +   
Sbjct: 247 IAPDQGYCLRIRTQKTQTEATLPISYEAYE-LCGTPGTGKVF------KDLKRSMINYPL 299

Query: 274 KAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           K+   KAG+ K  + HG R   A I    G   + +      K V   + Y    +  + 
Sbjct: 300 KSWLKKAGITKPITFHGFRHSYAVIQISLGTDIYTVSKMLTHKNVSTTQIYADLVNSKKR 359

Query: 332 GIKN 335
              N
Sbjct: 360 ETAN 363


>gi|298374771|ref|ZP_06984729.1| integrase [Bacteroides sp. 3_1_19]
 gi|301308464|ref|ZP_07214418.1| integrase [Bacteroides sp. 20_3]
 gi|298269139|gb|EFI10794.1| integrase [Bacteroides sp. 3_1_19]
 gi|300833934|gb|EFK64550.1| integrase [Bacteroides sp. 20_3]
          Length = 310

 Score = 93.9 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 48/303 (15%), Positives = 103/303 (33%), Gaps = 41/303 (13%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTK---HIRSGVESRKH 128
            I+  R+   +     +S  S++   +  +R  G     Y +I  +     +  +  R+ 
Sbjct: 13  YIARLREQGRY-----SSAKSYQDALNSFLRFCGQEVIPYTRIDREMLLRYQDYLRDREC 67

Query: 129 TPSSAIQFLTSMRVLFKWAVRQE------YVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           + ++   ++  +R ++  A+         Y+     + V+  ++K         E ++  
Sbjct: 68  SWNTVSTYMRRIRRVYGLAMENGEAPFSRYLFKGIFMGVKSKQKK-----ALPTESLRLL 122

Query: 183 KS--FWSEGSQ--PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
            +      G +   R      L+ G+   D        ++N +     QKTGT + VE+ 
Sbjct: 123 MTAPLDDSGLRKTQRALCLMFLFCGMAFVDFAHLKKSDIRNGVLRYNRQKTGTPMLVEIQ 182

Query: 239 DGFMKLLAM----TPIGKETFFINNDKQKMNATQFS----------IWFKAKATKAGVNK 284
               +LLA     T       F      K     F              K  A   GV +
Sbjct: 183 PVAKELLAALMTDTLRDSPYLFTFLSGTKTGEEAFREYTSALADFNSSLKELANACGVTE 242

Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
             +++ +R   AT   + G     +    G +++   + Y K     ++   N     S+
Sbjct: 243 MVTSYSIRHSFATTLKEQGVPIEMISELLGHQSIKTTQIYLKSFSLDKMSAVNKACFESI 302

Query: 343 VDS 345
            ++
Sbjct: 303 YNN 305


>gi|228927542|ref|ZP_04090595.1| Phage integrase [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|228832150|gb|EEM77734.1| Phage integrase [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
          Length = 317

 Score = 93.9 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 45/295 (15%), Positives = 94/295 (31%), Gaps = 52/295 (17%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQII-------------RKSGDFDYRKITTKHIRS 121
           I EY +     +L+  +  S+E+  ++                         I ++HI+ 
Sbjct: 7   IREYIEDRSLENLSHRTLESYENTLNEFRLWLNGCNGNEEEASSRAVTHVEDIKSQHIKD 66

Query: 122 GVE----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI--NPCLSVERPKRKTEGIRPWT 175
            +      R ++ ++    LT+++V F +  ++  +    NP L V+ P++ T      T
Sbjct: 67  YMRYCYKERSNSHTTVAGKLTNLKVYFNYLAQEGLIEERNNPTLRVKNPRKDTNV-ETLT 125

Query: 176 KED-------------MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222
           +E              +  F  +     +      FLL +G R  +      + +     
Sbjct: 126 EEQIRLILRHLRRRRRVDDFYHY-----RDYTLVVFLLGTGARLGEIMDLRWEDIDLKAG 180

Query: 223 SIKTQKTGTIIT----------VELPDGFMKLLAMTPIGKETFFINND-KQKMNATQFSI 271
            +    TG   T          +     + + L     G   +       +KM+     +
Sbjct: 181 QVVFPDTGKARTQQGQPLGAKLISELKDYKQYLENDTYGLPAYLFTTRTGRKMSREAIKL 240

Query: 272 WFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
            F   A +        SAH +R F  +    AG +   +        ++    Y 
Sbjct: 241 VFVRLAQELNFKSGRVSAHSLRHFYCSSLIKAGVSPFVVQKLMRHSKIETTMKYV 295


>gi|291282710|ref|YP_003499528.1| Integrase family protein [Escherichia coli O55:H7 str. CB9615]
 gi|290762583|gb|ADD56544.1| Integrase family protein [Escherichia coli O55:H7 str. CB9615]
          Length = 431

 Score = 93.9 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 44/317 (13%), Positives = 97/317 (30%), Gaps = 64/317 (20%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK-ITTKHIRSGVESR-- 126
           T+K L  ++        +A  S  ++ +    I+   G+ +    I  + + +  +    
Sbjct: 85  TIKELAEKFLALKE-TEVAKTSLNTYRAVIKNILSIIGEKNLASSINKEKLLAVRKELLT 143

Query: 127 --------------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
                           +  +   ++T++  +F++ V   Y+  NP   +   K       
Sbjct: 144 GYQIPKSNYIVTQPGRSAVTVNNYMTNLYAVFQFGVDNGYLTDNPFKGISPLKESRTIPD 203

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK----- 225
           P ++E+  +         Q +  +   +Y+G+R  + C  G + +   N    I+     
Sbjct: 204 PLSREEFIRLIDAC-RNQQAKNLWCVSVYTGIRPGELCALGWEDIDLKNGTMMIRRNLAK 262

Query: 226 --------TQKTGTIITV--ELPDGFMKLLAMTPIGKETFF------------------- 256
                      T  +I +     D     + +T + KE                      
Sbjct: 263 DRFTVPKTQAGTNRVIHLIKPAIDALRSQMTLTRLSKEHIIDVHLREFGRTEKQKCTFVF 322

Query: 257 -------INNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELM 308
                  + N             + A   +AG+ ++ ++  R   A  S  AGA    + 
Sbjct: 323 QPEVSARVKNYGDHFTVDSIRQMWDAAIKRAGLRHRKSYQSRHTYACWSLTAGANPAFIA 382

Query: 309 ATYGWKTVDQA-ETYTK 324
              G        + Y K
Sbjct: 383 NQMGHADAQMVFQVYGK 399


>gi|255520384|ref|ZP_05387621.1| integrase [Listeria monocytogenes FSL J1-175]
          Length = 381

 Score = 93.9 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 45/294 (15%), Positives = 96/294 (32%), Gaps = 49/294 (16%)

Query: 84  WGSLAVNSRISFESYFDQ--------IIRKSGDFDYRKITTKHIRSGVESR-KHTPSSAI 134
           +  L + ++   ES  ++        I+    D    KI     +  + +  K  P+S  
Sbjct: 77  FTWLELYTQTVKESTLERTKIFFNHHILPVFSDKFIDKIDIHFCQQVINTWSKSNPASYK 136

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSV-----ERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
           +       +FK+A+    +  +P   V     E  +++ + I  + K +++ F     + 
Sbjct: 137 RLKNLTSRVFKYAISLHLIENDPFAFVVVPRGEMIEKEEKDITFYDKYELRSFLDTVKDD 196

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----------------IFSIKTQKTGT-I 232
           +     F  L ++GLR S++       +  N                   + T KT    
Sbjct: 197 TFKYTFFYLLAFTGLRKSEALALTWNDVDLNNKRLYVNKTLSRGEHARILVNTTKTKAGK 256

Query: 233 ITVELP----DGFMKLL-------AMTPIGKETFFINNDK----QKMNATQFSIWFKAKA 277
             + +     D   K          +  + K     +N+          +     FK   
Sbjct: 257 RDISIDASTVDVLKKWKSYQRGNHHILRLDKVQIIFDNEGNYYNPSSTYSWLDNIFKHHT 316

Query: 278 TKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIR 330
               +  ++HG R   A++  +AGA+  ++    G   +      YT      +
Sbjct: 317 ELKKI--TSHGFRHTHASLLFEAGASLKDVQERLGHADIQTTSNIYTHVTQEKK 368


>gi|237744716|ref|ZP_04575197.1| conserved hypothetical protein [Fusobacterium sp. 7_1]
 gi|229431945|gb|EEO42157.1| conserved hypothetical protein [Fusobacterium sp. 7_1]
          Length = 329

 Score = 93.9 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 34/262 (12%), Positives = 87/262 (33%), Gaps = 14/262 (5%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS- 132
            +  +  + H    +  S   +++  + + +K  +   + ITT  +R  +++ +   ++ 
Sbjct: 54  YLEAFLSAKHVEGCSRKSLKYYKATIENLFKKI-EKSIKHITTNDLREYLDNYQKEGNAS 112

Query: 133 ---AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
                         F W   ++Y+  +P   + + K  T     ++ E M+  +      
Sbjct: 113 KITIDNIRRIFSSFFAWLEEEDYILKSPVRRIHKVKTGTVVKETYSDEAMEIMRDNCRS- 171

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDG----FMKL 244
            +     + L  +G+R  +  +  ++ +       +   K      V             
Sbjct: 172 LRDLAIIDILASTGMRVGELVKLNIEDIDFEGRECVVFGKGDKERKVYFDARTKIHLHNY 231

Query: 245 LAMTPIGKETFFIN--NDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG 301
           L          F++     +++  +   I  +    K  + K   H  R+  AT + D G
Sbjct: 232 LKTRDDDNSALFVSLLKPHKRLQISGVEIMLRQLGRKLNITKVHPHKFRRTLATKAIDKG 291

Query: 302 ATAHELMATYGWKTVDQAETYT 323
               ++    G + +D    Y 
Sbjct: 292 MPIEQVQQLLGHQKIDTTLQYA 313


>gi|13095744|ref|NP_076635.1| integrase [Lactococcus phage bIL286]
 gi|15673415|ref|NP_267589.1| integrase [Lactococcus lactis subsp. lactis Il1403]
 gi|12724422|gb|AAK05531.1|AE006373_10 prophage pi3 protein 60, integrase [Lactococcus lactis subsp.
           lactis Il1403]
 gi|12830933|gb|AAK08288.1|AF323669_1 integrase [Lactococcus phage bIL286]
          Length = 359

 Score = 93.9 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 41/338 (12%), Positives = 108/338 (31%), Gaps = 28/338 (8%)

Query: 13  KERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR-KKPTTL 71
             + ++G   Y F+   G++       E +       A       +E I++P  K   T 
Sbjct: 5   AYKKKNGTTAYKFKAYIGKKNGKSQYAEKSGFKTKADARAALHNIQEEIDNPTPKSSMTF 64

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
           K L  E+               +  ++   ++   G       T   +++          
Sbjct: 65  KELYDEWLLVYEKEVQNSTYYKTTRAFEKHVLPVIGSTKLSDFTPMELQNFRNDLSEKLK 124

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCL-----SVERPKRKTEGIRPWTKEDMQQFKSFW 186
            A +    +R +F  A    Y+  NP L      +++   + +       ++++ F +  
Sbjct: 125 FARKLFGMVRKVFNHAALLSYIQANPALPVTSQGIKKKVEEKKDFY--DTDELRDFMALV 182

Query: 187 SEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
            + +  +    F  L ++G+R  +      +  + +   I    + + +  E+       
Sbjct: 183 EKTNDIKKIALFRILAFTGIRKGELLALEWKDYRKSTLDINKAISHSPVGYEILPPKANS 242

Query: 245 LAMTPIGKET----------------FFINNDKQKMNATQFSIWFKAKATKAGV-NKSAH 287
             +  + ++T                 F + +   ++ ++   W      +  +     H
Sbjct: 243 NRLLSLDEKTCKILDELHQTYPESTRIFESENGGMLSPSKPRKWLLEITKEKEIEPIRIH 302

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTK 324
             R   A++  ++G +  ++    G   +      YT 
Sbjct: 303 AFRHTHASLLFESGMSLKQVQYRLGHADLKTTMNIYTH 340


>gi|323486907|ref|ZP_08092223.1| hypothetical protein HMPREF9474_03974 [Clostridium symbiosum
           WAL-14163]
 gi|323691955|ref|ZP_08106204.1| integrase [Clostridium symbiosum WAL-14673]
 gi|323399770|gb|EGA92152.1| hypothetical protein HMPREF9474_03974 [Clostridium symbiosum
           WAL-14163]
 gi|323503964|gb|EGB19777.1| integrase [Clostridium symbiosum WAL-14673]
          Length = 350

 Score = 93.9 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 42/255 (16%), Positives = 85/255 (33%), Gaps = 29/255 (11%)

Query: 110 DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
           +Y +    H     E   +T    ++ + S++  + +  R E +  NP   V+ PK   +
Sbjct: 89  EYMEFLKCHSTEKREDLVNTERGIMRKIASLKSFYNYFYRHERIKNNPAALVQLPKLHEK 148

Query: 170 GIRPWTKEDMQQFKSFWSEGS---------------QPRLAFEFLLYSGLRCSDSCRAGV 214
            I     +++         G+               +       LL +G+R S+     +
Sbjct: 149 EIIRLEVDEVASLLDQVEAGAQLTEKQKAFHAKTKIRDLALMTLLLGTGIRVSECVGLNI 208

Query: 215 QHLQNNIFSIKT-QKTGTIITV----ELPDGFMKLLA------MTPIGKETFFINNDKQK 263
             +  N   I+  +K G  + V    E+ D     +A        P  ++  F++  K++
Sbjct: 209 NDVDFNTGGIRIHRKGGKEVIVYFGAEVEDALADYMAERKHITPEPGHEDALFLSLQKKR 268

Query: 264 MNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-E 320
           +N        K  A         + H +R    T         + +    G + V+   +
Sbjct: 269 LNVRSVENLVKKYAKIVTPLKKITPHKLRSTYGTNLYRETGDIYLVADVLGHEDVNTTKK 328

Query: 321 TYTKGADRIRLGIKN 335
            Y    D  R   +N
Sbjct: 329 HYAALEDERRRSARN 343


>gi|317486732|ref|ZP_07945549.1| phage integrase [Bilophila wadsworthia 3_1_6]
 gi|316922115|gb|EFV43384.1| phage integrase [Bilophila wadsworthia 3_1_6]
          Length = 363

 Score = 93.9 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 66/343 (19%), Positives = 118/343 (34%), Gaps = 33/343 (9%)

Query: 9   PFVTKER--TRHGKIIYYFR---KGHGRRIRLPYPHESTFIPA-YMSALTGSTPKREY-- 60
           P V +     R+GK    F    +   R+I      +S  + A Y S + G   K     
Sbjct: 10  PGVYERVLIDRNGKADVAFDIAYRHDSRKIWETVGRKSEGVNASYASRIRGERLKHIEDN 69

Query: 61  -INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119
              +P   P T K     +      G  +  +   +  +   II   GD    KI   HI
Sbjct: 70  NFVAPGNVP-TFKQAAHRFLTVHMAGKASAKNMTGYLEH--HIIPIFGDARMDKIRPMHI 126

Query: 120 R---SGVESRKHTPSSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWT 175
                 ++++  +P +    +  +R +++ A     YV   P   V+ P   +  +R  T
Sbjct: 127 EELKKAIQNKGLSPQTEKHVIGFVRQVYRKAKLWGVYVGSIPTEGVQLPAVDSARLRFLT 186

Query: 176 KEDMQQFKSFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTI 232
           +++ +       + S          LY+G+R  +     V H+     I ++   K GT 
Sbjct: 187 EKEARILLDELKKRSPQWHDIAYVSLYTGMRLREVLSLKVGHVNIAARIINVMDAKAGTR 246

Query: 233 ITVELPDGFMKLLAMTPIGKET---FFINNDKQKMNATQFSIWFKAKA--------TKAG 281
               + +   ++      GK+T    F       +     S  FK  A        T A 
Sbjct: 247 AA-YMNEEVQRIFLRRCDGKDTEGFVFEQKGGGHIRY--ISSAFKRTADMLFNEGITDAR 303

Query: 282 VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
                H +R    +  A  G   + +    G  T++  + Y+K
Sbjct: 304 YKVVFHTLRHTFGSWLAQKGVPLYTIAELMGHSTLEMTKRYSK 346


>gi|262204532|ref|YP_003275740.1| integrase family protein [Gordonia bronchialis DSM 43247]
 gi|262087879|gb|ACY23847.1| integrase family protein [Gordonia bronchialis DSM 43247]
          Length = 608

 Score = 93.9 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 48/274 (17%), Positives = 88/274 (32%), Gaps = 31/274 (11%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYR-----KITTKHIRSGVESRKHTPS--------- 131
           SL  N+    E    +      D   +     ++   HI    +    TP+         
Sbjct: 225 SLRPNTVTGIEHDLRRFGSWLTDTHPQIANCAELQRVHIEEFKKWLSTTPTPRTGKPLNR 284

Query: 132 -SAIQFLTSMRVLFKWAVRQEY--VAINPCLSV-ERPKRKTEGIRPWTKEDMQQFKSFWS 187
            S    L ++   F      +Y    + P + + + P       R        +      
Sbjct: 285 GSIKNALINLHCFFDRITDWDYPNAPVRPLVFIGDLPIIDKPLPRFLDDGAATKLLRAAR 344

Query: 188 EGSQP--RLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDGF 241
             + P  RL  E L  +G+R S+        +          I   K      + L    
Sbjct: 345 ADTDPLSRLIVELLARTGIRISELLGLTTDAVVQIGTAFWLRIPLGKMHNDRYIPLHPQL 404

Query: 242 MKLLA-----MTPIG-KETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSA 294
            +LL        P G + +  +  + + + + + +      A  AG+   +AH +R   A
Sbjct: 405 KELLDDWIDNHRPTGIRTSRLLVENHRPITSHRVTAALDRHAEAAGIGHVTAHQLRHTLA 464

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           T + + G +   + A  G KT+     Y + ADR
Sbjct: 465 TQAINRGMSLDAIAALLGHKTLAMTMVYARIADR 498


>gi|319641868|ref|ZP_07996545.1| transposase [Bacteroides sp. 3_1_40A]
 gi|317386541|gb|EFV67443.1| transposase [Bacteroides sp. 3_1_40A]
          Length = 407

 Score = 93.9 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 42/267 (15%), Positives = 93/267 (34%), Gaps = 27/267 (10%)

Query: 85  GSLAVNSRISFESYF----DQIIRKSGDFD--YRKITTKHIRSGVESRKHTP----SSAI 134
             +A  +   +E+      D +       D    +++ + +       K +     ++A 
Sbjct: 128 TDMAPATVQRYETSLKHTQDFVWETYHKKDILLDEVSRQFVEDYEFWLKTSKKCCHNTAT 187

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQ 191
           ++L + + + + A+ + ++  +P L + R              ++++  S         Q
Sbjct: 188 KYLKNFKKIIRIALAKGWMKNDPFLEI-RFSLDKVEPDFLEDSEIRKLISKEIDIPRLGQ 246

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVELPDGFMKLLA 246
            R  F F  ++GL  SD    G +H+  +           QKT  +  + L +  +K+L 
Sbjct: 247 VRDIFVFCCFTGLAFSDIHGLGKEHIVEDSNGVRWIRKGRQKTKIMCNIPLMEVPLKILE 306

Query: 247 MTPIGKETFFINNDK---QKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAG 301
                +   +          +   + + + K  A   G+ K+   H  R   AT +   G
Sbjct: 307 KYSTNE---YCRKHGVLFPVLCNQKMNAYLKELADICGIKKTLTTHVARHTFATFALANG 363

Query: 302 ATAHELMATYGWKTVDQAETYTKGADR 328
            +   +    G   V     Y +  DR
Sbjct: 364 VSIESVAKMLGHTNVQMTRHYARVLDR 390


>gi|293414529|ref|ZP_06657178.1| integrase for prophage CP-933O [Escherichia coli B185]
 gi|291434587|gb|EFF07560.1| integrase for prophage CP-933O [Escherichia coli B185]
          Length = 376

 Score = 93.9 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 61/369 (16%), Positives = 117/369 (31%), Gaps = 48/369 (13%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKR-------- 58
           L P+  K   R+ K+ + +R     +       +        +       ++        
Sbjct: 14  LSPYFDK---RNNKVYWRYRHPITGKNHGLGSIDQKLAETIAAEANSRLARQQMEQMLSL 70

Query: 59  -EYINSPRKKPTTLKWLISEYRKS----AHWGSLAVNSRISFESYFDQIIRKSGDFDYRK 113
            E I S     +T+   ++ YRK        G + +++     +       + G      
Sbjct: 71  QEKIISDTGGASTVSIFLNNYRKIQQERYENGEIKLSTLKQKAAPLRVFDERFGARPLDA 130

Query: 114 ITTKHIRSGVESRKHTPSSAIQ--FLTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTE 169
           IT K + S +E  K    + +   F   +  +F+ A +   V    NP  S ++P+ +  
Sbjct: 131 ITVKDVVSVLEEYKAKGHNRMGQIFRKVLIDVFREAQQTGDVPPGFNPAESAKKPQVRIS 190

Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229
             R    E M  + +   +G   +      L +G R SD C+     +++    ++ QKT
Sbjct: 191 RQRLTFDEWMMIYNAAEKDGYFLQRGMLLALMTGQRLSDICKMQFSDIRDGYLHVEQQKT 250

Query: 230 GTIITVELP---DGFMKLLAMTPIGKETFFIN-------------NDKQKMNATQFSIWF 273
           G  I + L    D     L         + ++                  +     ++ F
Sbjct: 251 GARIAIPLALRCDKLNLTLGDVVSSCRDYILSPWLLHHHHAKGMGKRGGMVKPATLTVAF 310

Query: 274 KAKA-------TKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY--TK 324
           K             G   S H  R  S  +  + G     L    G       + Y   +
Sbjct: 311 KKARDSVDYNWRANGTPPSFHEQRSLSERLFREQGIDTKIL---LGHSNQKMTDIYNDAR 367

Query: 325 GADRIRLGI 333
           G +  +L I
Sbjct: 368 GKEWKKLVI 376


>gi|289643686|ref|ZP_06475798.1| integrase family protein [Frankia symbiont of Datisca glomerata]
 gi|289506519|gb|EFD27506.1| integrase family protein [Frankia symbiont of Datisca glomerata]
          Length = 413

 Score = 93.9 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 52/365 (14%), Positives = 119/365 (32%), Gaps = 61/365 (16%)

Query: 10  FVTKERTRHGKIIYYFR-KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
           ++  +   HG++    R  G   R  +    E+               +         +P
Sbjct: 19  YLGADGVWHGRVTVGVRDNGKPDRRHVRAKTETEVTRKVRKL---EQERDAGTVRKPGRP 75

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRK 127
            T++  ++ + ++    S++ N+   +       ++   G     ++  +HI S +   +
Sbjct: 76  WTVERWLTHWVENISAPSVSENTSDGYRVAVRVHLVPGLGAHRLERLEPEHIESLMRRMQ 135

Query: 128 HT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
            +   P++A Q L ++R     AVR+ +V  N     + P+   + + P++  ++QQ  +
Sbjct: 136 ASGSAPATAHQALRTLRTALGEAVRRGHVGRNAAALAKPPRVVEQEVEPYSVAEVQQLLT 195

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------------ 232
             ++  +    +   L  GLR  ++       +  +   I+ ++                
Sbjct: 196 EAAK-RRNSARWVLALALGLRQGEALGLRWADVDLDAGVIRVRRGRLRPKYRHGCVEPCG 254

Query: 233 -------------------------ITVELPDGFMKLLAMTP--------------IGKE 253
                                      + LPD  +++L                  +   
Sbjct: 255 RKPGFCPNKVQIRPDTKETKSRAGTRPIGLPDELVEILRRHKERQDKERAEAGDLWVDGG 314

Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYG 312
             F     + +N       +KA    AG+ +   H  R  +AT+    G     +M   G
Sbjct: 315 WLFATETGRPLNPGTDYHAWKALVVAAGLRDARLHDARHTAATVLLLLGVPDRTVMGIMG 374

Query: 313 WKTVD 317
           W T  
Sbjct: 375 WSTDQ 379


>gi|144898165|emb|CAM75029.1| Phage integrase [Magnetospirillum gryphiswaldense MSR-1]
          Length = 387

 Score = 93.9 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 62/311 (19%), Positives = 120/311 (38%), Gaps = 26/311 (8%)

Query: 50  ALTGSTPKREYINSPRKKPTTLKWLI-SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD 108
           AL+G     +  +  R  P T K  +  +Y   A     + + + S      ++I   G 
Sbjct: 84  ALSGDPAGDK--DKHRAVP-TFKAFVTEQYLPFAKDRLRSYSDQESMCRL--RLIPTWGA 138

Query: 109 FDYRKITTKHIRSGVESRKH---TPSSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERP 164
               +I T  I       +    +PS+  + +   + +F  A+R + Y   NPC  VE  
Sbjct: 139 KRLDEIRTTDIVELQRRLRDENLSPSTVNRHVALAKRVFNLALRWQAYEGRNPCQHVE-F 197

Query: 165 KRKTEGIRPWTKEDMQQ-FKSFWSEGSQ-PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222
            R+ +  R  T ++M++ F++   E S+        L  +G R S++  A    +     
Sbjct: 198 AREHQRERFLTPDEMRRLFQALDDEPSRSAANCIALLALTGARKSEALNARFDDIDLPNR 257

Query: 223 SIKT----QKTGTIITVELPDGFMKLLAMTPIGKETFFIN----NDKQKMNATQFSIWFK 274
                    K+G +  + L +  +KLL   P   +  ++     +D    N  +     K
Sbjct: 258 VWTVPASRSKSGKVRRIPLSEAAVKLLVGLPPEPDCPWLFPNAASDGPIENIRRCWNRLK 317

Query: 275 AKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR----IR 330
           A AT    +   H +R   A++   +G + + +    G  + +    Y+  ++       
Sbjct: 318 AAATLPS-DTRPHDLRHSFASLLVGSGQSLYSVQTILGHASPNMTARYSHLSNTSLVDRV 376

Query: 331 LGIKNSRRISS 341
           LGI+ S R  +
Sbjct: 377 LGIQASDRAGA 387


>gi|323486023|ref|ZP_08091354.1| phage integrase [Clostridium symbiosum WAL-14163]
 gi|323400590|gb|EGA92957.1| phage integrase [Clostridium symbiosum WAL-14163]
          Length = 359

 Score = 93.9 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 53/355 (14%), Positives = 113/355 (31%), Gaps = 52/355 (14%)

Query: 7   LPPFVTKERTRHGKIIYYF------RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60
           +P +  K   + GK ++Y         G  + I             Y  +          
Sbjct: 1   MPAY--KYTLKSGKTLWYANFYYTDWTGEKKHICKRGFKTQREAKDYERSFLDQQSSSSD 58

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHI 119
           I            L++ Y +      L   +  +     D +++   G      I T  +
Sbjct: 59  ILFSS--------LVANYLEDME-HRLKPTTMENKRFIIDTKLLPYFGKQKICDIDTIKV 109

Query: 120 RSGVESR------KHTPSSAIQFLTS---MRVLFKWAVRQEYVAINPCLSVE-RPKRKTE 169
           R               P S     T    +  +  +AV    + +NPC +     K K +
Sbjct: 110 RKWQNELISYRDDDGKPFSQTYLKTVNNQLSAIMNYAVSHYRLPVNPCRAAGSMGKSKAD 169

Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL------------ 217
            +  WT+++ ++F +  S+ S  +LAF+ L Y+G+R  +        +            
Sbjct: 170 EMNIWTQKEYERFSNAISK-SSMKLAFDILFYTGMRSGELLALTPADILSSKRIDINKNY 228

Query: 218 ---QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK---MNATQFSI 271
              +     ++ +       + +PD     +          +   +  +      T    
Sbjct: 229 AKIKGEELFLEPKTPKAKRCISIPDFLYDDIQEYISK---LYGIGNGDRIFYFQKTALEK 285

Query: 272 WFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
             K  + + G+     H +R   A++  + G T  E+    G +++    +TY+ 
Sbjct: 286 EMKRVSERIGLKPIRVHDLRHSHASMLIELGFTPLEIAERLGHESIKTTLDTYSH 340


>gi|167757961|ref|ZP_02430088.1| hypothetical protein CLOSCI_00297 [Clostridium scindens ATCC 35704]
 gi|167664393|gb|EDS08523.1| hypothetical protein CLOSCI_00297 [Clostridium scindens ATCC 35704]
          Length = 349

 Score = 93.9 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 46/269 (17%), Positives = 89/269 (33%), Gaps = 22/269 (8%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESR---- 126
           +LI  YR       LA  +   +     ++I +      D  +I   +     E+R    
Sbjct: 66  YLIDLYRLKK--SRLAKETMDQYIGAITRLITQVDKPLTDIDEIDIDYYLRYYENRNVKN 123

Query: 127 ---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
              K+  S+       +   F W  ++++V  NP   VE  + + + I  +    M++ +
Sbjct: 124 NRGKNQASTCNNERRYLSAFFTWLRKEKFVTYNPVECVEPKRERRKPIDYFRPGQMEELR 183

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDG- 240
                  + R   E L  +G R  +        +       +I  +K G    + L +  
Sbjct: 184 EGC-ITLRDRALVEALRSTGARVGEIVPINRDDIDWNTGDVTILGEKGGRYRVIYLDEVA 242

Query: 241 ---FMKLLAMTPIGKETFFI--NNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFS 293
                K L       E  F+   +   +++ T      K  A +AG+      H +RK  
Sbjct: 243 RYHLRKYLESRKDENEALFVWERSPHNRLDKTGIRASLKTIAGRAGLKCRVYPHKMRKTL 302

Query: 294 ATISADAGATAHELMATYGWKTVDQAETY 322
                + G    ++    G    +    Y
Sbjct: 303 GMQLKNQGVDIGDIQEILGHSNPNVTSRY 331


>gi|293433570|ref|ZP_06661998.1| phage integrase family site specific recombinase [Escherichia coli
           B088]
 gi|291324389|gb|EFE63811.1| phage integrase family site specific recombinase [Escherichia coli
           B088]
          Length = 376

 Score = 93.9 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 61/377 (16%), Positives = 116/377 (30%), Gaps = 64/377 (16%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKR-------- 58
           L P+  K   R+ K+ + +R     +       +        +       ++        
Sbjct: 14  LSPYFDK---RNNKVYWRYRHPITGKNHGLGSIDQKLAETIAAEANSRLARQQMEQMLSL 70

Query: 59  -EYINSPRKKPTTLKWLISEYRKS----AHWGSLAVNSRISFESYFDQIIRKSGDFDYRK 113
            E I +     +T+   ++ YRK        G + +N+     +       + G      
Sbjct: 71  QEKIINDTGGSSTVSIFLNNYRKIQQERYENGEIKLNTLKQKAAPLRVFDERFGTRPLNA 130

Query: 114 ITTKHIRSGVESRKHTPSSAIQ--FLTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTE 169
           IT K + S +E  K    + +   F   +  +F+ A +   V    NP  S ++P+    
Sbjct: 131 ITVKDVVSVLEEYKSRGHNRMGQIFRKVLIDVFREAQQTGDVPPGFNPAESAKKPQV-RI 189

Query: 170 GIRPWTKEDMQQ-FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
             +  T ++    + +   +G   +      L +G R SD C+     +++    ++ QK
Sbjct: 190 SRQRLTFDEWTMIYNAAEKDGYFLQRGMLLALMTGQRLSDICKMQFSDIRDGYLHVEQQK 249

Query: 229 TGTIITVE-----------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265
           TGT I +                        L    +        GK           + 
Sbjct: 250 TGTRIAIPLALRCDKLNLTLDDVVSSCRDCVLSPWLLHHHHAKGTGK-------RGGMVK 302

Query: 266 ATQFSIWFKAKA-------TKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
               +I FK             G   S H  R  S  +  + G     L    G      
Sbjct: 303 PATLTIAFKKARDSVDYNWRANGTPPSFHEQRSLSERLFREQGIDTKIL---LGHSNQKM 359

Query: 319 AETY--TKGADRIRLGI 333
            + Y   +G +  +L I
Sbjct: 360 TDIYNDARGKEWKKLVI 376


>gi|227823634|ref|YP_002827607.1| site-specific tyrosine recombinase XerC [Sinorhizobium fredii
           NGR234]
 gi|227342636|gb|ACP26854.1| tyrosine recombinase XerC [Sinorhizobium fredii NGR234]
          Length = 310

 Score = 93.9 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 47/284 (16%), Positives = 80/284 (28%), Gaps = 29/284 (10%)

Query: 76  SEYRKS-AHWGSLAVNSRISFESYFDQIIRKS-GDF-------DYRKITTKHIRSGVESR 126
             +  S A    L+  +  ++E    Q +    G         D R +    +R  +  R
Sbjct: 17  HRWLASLAEERRLSEKTIEAYERDTRQFLTFLTGHLAGPPRLADIRTLRPADLRGFLAQR 76

Query: 127 KHTPSSAIQF---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM---- 179
           +   + A      L  +R   ++  +          +V  PK+     +P T  D     
Sbjct: 77  RKAGAGARTLGRGLAGLRSFLRYLEKHGLANAAGAGAVRSPKQPKSLPKPLTDRDALEVV 136

Query: 180 ---QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
               Q        ++       L   GLR S++                T K G    V 
Sbjct: 137 TADAQLAEEPWIAARNAAVLTLLYGCGLRISEALDLTPDDFSGAASLRITGKGGKTRIVP 196

Query: 237 LPDGFMKLLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAH 287
           L       +A             E  F      K+         +   +  G+    + H
Sbjct: 197 LIAAATGAVATYRKLCPYHIGPGEPIFRGARGAKLQPAIIQREMQKLRSALGLPDSATPH 256

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            +R   AT     G     +    G  ++   + YT G D  RL
Sbjct: 257 ALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYT-GVDSARL 299


>gi|209918891|ref|YP_002292975.1| putative phage integrase [Escherichia coli SE11]
 gi|209912150|dbj|BAG77224.1| putative phage integrase [Escherichia coli SE11]
          Length = 431

 Score = 93.9 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 45/317 (14%), Positives = 98/317 (30%), Gaps = 64/317 (20%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK-ITTKHIRSGVESR-- 126
           T+K L  ++        +A  S  ++ +    I+   G+ +    I  + + +  +    
Sbjct: 85  TIKELAEKFLALKE-TEVAKTSLNTYRAVIKNILSIIGEKNLASSINKEKLLAVRKELLT 143

Query: 127 --------------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
                           +  +   ++T++  +F++ V   Y+A NP   +   K       
Sbjct: 144 GYQIPKSNYIVTQPGRSAVTVNNYMTNLYAVFQFGVDNGYLADNPFKGISPLKESRTIPD 203

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK----- 225
           P ++E+  +         Q +  +   +Y+G+R  + C  G + +   N    I+     
Sbjct: 204 PLSREEFIRLIDAC-RNQQAKNLWCVSVYTGIRPGELCALGWEDIDLKNGTMMIRRNLAK 262

Query: 226 --------TQKTGTIITV--ELPDGFMKLLAMTPIGKETFF------------------- 256
                      T  +I +     D     + +T + KE                      
Sbjct: 263 DRFTVPKTQAGTNRVIYLIKPAIDALRSQMTLTRLSKEHIIDVHLREFGRTEKQKCTFVF 322

Query: 257 -------INNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELM 308
                  + N             + A   +AG+ ++ ++  R   A  S  AGA    + 
Sbjct: 323 QPEVSARVKNYGDHFTVDSIRQMWDAAIKRAGLRHRKSYQSRHTYACWSLTAGANPAFIA 382

Query: 309 ATYGWKTVDQA-ETYTK 324
              G        + Y K
Sbjct: 383 NQMGHADAQMVFQVYGK 399


>gi|331085647|ref|ZP_08334730.1| hypothetical protein HMPREF0987_01033 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330406570|gb|EGG86075.1| hypothetical protein HMPREF0987_01033 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 322

 Score = 93.9 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 35/265 (13%), Positives = 87/265 (32%), Gaps = 15/265 (5%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH----TPSSAIQFLTSMRVL 143
           +  +   +    D++++K      RKI+T+ IR  +   +     +  +      ++   
Sbjct: 61  SERTIQYYSVTVDKMLQKI-QTPVRKISTEEIRKYLVDYQKINDCSKVTVDNVRRNISSF 119

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203
           F W   ++Y+  +P   + + K K       + E ++  +       +     + L  +G
Sbjct: 120 FSWLEEEDYILKSPMRRIHKIKTKQPVKEIISDEAIEMLRDHCQCP-RDLAMIDLLYSTG 178

Query: 204 LRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDG----FMKLLAMTPIGKETFFIN 258
           +R  +     +  +       +   K      V          +  L+         F+ 
Sbjct: 179 IRVGELVNLNISDVDFEARECVVFGKGDKERRVYFDAKAKLHLLNYLSERKDNNPALFVT 238

Query: 259 --NDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKT 315
                 ++  +   I  +    K  + K   H  R+  AT + D G    ++    G   
Sbjct: 239 LDAPYDRLKISGVEIRIRTLGRKLNMEKIHPHKFRRTMATRAIDKGMPIEQVQKLLGHSQ 298

Query: 316 VDQAETYTKGADRIRLGIKNSRRIS 340
           +D    Y    ++  +   + + I+
Sbjct: 299 IDTTMQYA-IVNQTNVKTSHQKFIA 322


>gi|206602617|gb|EDZ39098.1| Putative phage integrase [Leptospirillum sp. Group II '5-way CG']
          Length = 346

 Score = 93.9 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 50/335 (14%), Positives = 113/335 (33%), Gaps = 33/335 (9%)

Query: 17  RHGKIIYYFR-KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75
           + G + +  + +  G  ++    +       +   +     +  +++    + TTL   +
Sbjct: 6   KRGDLQWRVKIRRRGFPLQTRTFNTKAEAETWARLIETEMDRGSFVDRSEAENTTLSDAL 65

Query: 76  SEYRKSAHWGSLAVNSRISFE---SYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132
             Y +      ++ + + S++      +      G     +I    I    + R    ++
Sbjct: 66  DRYAR-----EISPHKKGSYQELCRIENLKTHPLGKRFIAQIRGSDIALYRDERLKKVAA 120

Query: 133 AIQFLT--SMRVLFKWAVRQEYVA---INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           A   L    +  LF+ A R+E+      NP   V  PK+     R     + ++      
Sbjct: 121 ATVRLELAIISHLFEIA-RKEWGMESLSNPVRIVNLPKKSESRDRRLLYGEEEKLLESCD 179

Query: 188 EGSQPRLAFE-FLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTGTIITVELPDGFMKL 244
                  A     L +G+R  +      +H+    N   I   K G   +V L    +++
Sbjct: 180 IYGGDLPAIVRIALETGMRRGEIVGMTWEHVDLKKNTVLIPKTKNGEKRSVPLSKKAVEI 239

Query: 245 LAMTPI--GKETFFINNDKQKMNATQFSIW-----FKAKATKAGV--------NKSAHGV 289
           L       G   + I  +     A + +I      ++ +  + G+        + + H +
Sbjct: 240 LKGLSRRIGGRVWEITEEHSVTTAFRRAISRARATYEKECQEKGIKQDPSFLVDLTFHDL 299

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           R  + +   + G    ++ A  G KT+     YT 
Sbjct: 300 RHEATSRFFEKGLNPMQVAAITGHKTLQMLRRYTH 334


>gi|316932246|ref|YP_004107228.1| integrase family protein [Rhodopseudomonas palustris DX-1]
 gi|315599960|gb|ADU42495.1| integrase family protein [Rhodopseudomonas palustris DX-1]
          Length = 440

 Score = 93.9 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 55/362 (15%), Positives = 105/362 (29%), Gaps = 56/362 (15%)

Query: 10  FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR---K 66
           +V + RTR G+   Y        I L                 G   + E     R   +
Sbjct: 41  YVIQYRTR-GRSRRY-------TIGLHGVWTPETARREAKVQLGRVAQGENPAEERELDR 92

Query: 67  KPTTLKWLISEYRKSAHWG---------SLAVNSRISFESYFDQIIRKSGDFDYRKITTK 117
           K  T+K L  +Y      G           A    +        II   G+   R +T  
Sbjct: 93  KALTMKQLCEQYLADMQAGLILGKGGRPKKASTVEVDIGRIRRHIIPLVGNRRVRDVTKA 152

Query: 118 HIRSGVESR--------------------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINP 157
            + + +                       +  P +A + +  +  +F +AV+   +  NP
Sbjct: 153 DMNNLMRDIIAGKTRISVKTEKLRGRAIVRGGPGTATRAMGLLGGIFTYAVQLGIIEHNP 212

Query: 158 CLSVERPKRKTEGIRPWTKED---MQQFKSFWSEGSQPRL---AFEFLLYSGLRCSDSCR 211
              +++PK K    R  ++ +   + +  +   +  + R+     + +  +G R ++   
Sbjct: 213 THGLKKPKYKVRDRR-LSEAEYRTLGEILARARKSDRYRIHAEILQLIAVTGCRKTEIVE 271

Query: 212 AGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKL----LAMTPIGKETFFINNDKQKMN 265
                   + +   +   K G  +    P G   +               F         
Sbjct: 272 LKWSEVDFEGSCLRLSDSKEGASVR---PIGLSAINFLEKRHAHRTGTYVFPGQSDDNAV 328

Query: 266 ATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
                 W K        + + H +R   A+I+ D G T   + A  G         Y   
Sbjct: 329 GNFPQSWKKLFTESPLWDVTPHVLRHSFASIANDLGFTEITIAALIGHAKGSVTSKYVHT 388

Query: 326 AD 327
            D
Sbjct: 389 LD 390


>gi|310813968|gb|ADP30794.1| IntI1 [Providencia rettgeri]
          Length = 313

 Score = 93.9 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 42/305 (13%), Positives = 94/305 (30%), Gaps = 62/305 (20%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129
           ++ + R+   +   ++ +  ++ ++    IR  G      + +  + + +      RK +
Sbjct: 16  VLDQLRERIRYLHYSLRTEQAYVNWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75

Query: 130 PSSAIQFLTSMRVLFK--WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            S+  Q L ++   +         ++       + RP+         T +++ +   F  
Sbjct: 76  VSTHRQALAALLFFYGKVLCTDLPWLQ-----EIGRPRPSRRLPVVLTPDEVVRILGFL- 129

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
           EG   RL  + L  +G+R S+  +  V+     +    ++  K      + LP+     L
Sbjct: 130 EGEH-RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSL 188

Query: 246 AMTPIGKETFFINN---------------------------------------------D 260
                    +++ +                                              
Sbjct: 189 REQLSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVR 248

Query: 261 KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           +  M    F   FK    +AG+ K  + H +R   AT    +G     +    G   V  
Sbjct: 249 RHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVST 308

Query: 319 AETYT 323
              YT
Sbjct: 309 TMIYT 313


>gi|300863888|ref|ZP_07108808.1| Integrase family protein [Oscillatoria sp. PCC 6506]
 gi|300338109|emb|CBN53954.1| Integrase family protein [Oscillatoria sp. PCC 6506]
          Length = 288

 Score = 93.9 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 41/264 (15%), Positives = 86/264 (32%), Gaps = 29/264 (10%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRV 142
              +  ++  +  Y  + +  +G           +   + +E    + S+    + +++ 
Sbjct: 22  HGKSKRTQSYYRLYAQRFLEFAGKPLLLVTLAEVQGFATSLEQNNLSASTQRTIMAAVKS 81

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFEF 198
           L  +  + E +  N    V  P    +     ++  + + +           + +L  + 
Sbjct: 82  LLSFGTKIEILPRN----VGAPLPLPKAPDTLSERLLSEIEVLTMIDLESNLRNKLIIKT 137

Query: 199 LLYSGLRCSDSCRAGVQH--LQNNIFSIKTQKTG-TIITVELPDGF---MKLLAMTPIGK 252
           L Y G R S+ C    +H  ++NN   I     G    TV +P      ++ L       
Sbjct: 138 LYYGGFRVSELCALKWKHLSIRNNKGQITVTGKGIKTRTVLIPASLWVELQRLRGDSGEN 197

Query: 253 ETFFINNDKQKMNATQFSIWFKAK--------ATKAGVNK--SAHGVRKFSATISADAGA 302
           E  F     QK +        +          A  A +    S H +R   A+ + + GA
Sbjct: 198 EPVF---RSQKHSHDGQGHLQREWVHKIVQAAAKPAKITGKVSPHTLRHAHASHALERGA 254

Query: 303 TAHELMATYGWKTVDQAETYTKGA 326
             H +  T G  ++     Y    
Sbjct: 255 KIHLVSETLGHSSIAITSRYLHAQ 278


>gi|86137451|ref|ZP_01056028.1| site-specific recombinase, phage integrase family protein
           [Roseobacter sp. MED193]
 gi|85825786|gb|EAQ45984.1| site-specific recombinase, phage integrase family protein
           [Roseobacter sp. MED193]
          Length = 367

 Score = 93.9 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 66/347 (19%), Positives = 118/347 (34%), Gaps = 30/347 (8%)

Query: 11  VTKERTRHGKIIYY---FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK 67
           V +   + G   ++   +R    R +RL      +   A M+A+               K
Sbjct: 31  VLRVGKKFGAKHWHTFVYRGSKRRMVRLGLFPHMSVRDARMAAIQAKANANAPWTPEHIK 90

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHIRSGVE-- 124
             T+  L  EYRK+       + +    +S +D    +  G      ++  H R      
Sbjct: 91  --TVADLFEEYRKA---REPKMRAWRDVQSAWDVWGEEFLGYLKLTDVSIHHGRELRNHV 145

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
           S+K T       +  +R +F WAV +  +  NP   ++     T   R  T E+ Q+   
Sbjct: 146 SKKSTELRGSAVIRYIRPMFSWAVDESLIDENPWAGLKATAIATPRDRVLTNEEWQK--- 202

Query: 185 FWSEGSQPRLA--FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK-------TGTIITV 235
            W    +  L   F FL+ S  R  +        +Q N+++I  +K       +     V
Sbjct: 203 VWGATFKDNLGAYFRFLMLSAQRKDNVASMKWDEIQGNLWTIPAEKFKATKKESAKAHEV 262

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK-ATKAGV-NKSAHGVRKFS 293
            L    M++L   P      F       +   +     K + A KAGV +   H +R+ +
Sbjct: 263 PLTPALMEILENQPKRGPFVF---GPTGLKQLRLGSREKDRLAKKAGVDDWRLHDLRRTA 319

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKG--ADRIRLGIKNSRR 338
           AT   +       +    G         Y +    +  R  +    +
Sbjct: 320 ATRMTENKIPRFIVERVLGHADRSVTAVYDRANYREEKRQALNELSK 366


>gi|254168847|ref|ZP_04875688.1| site-specific recombinase, phage integrase family protein
           [Aciduliprofundum boonei T469]
 gi|254169391|ref|ZP_04876219.1| site-specific recombinase, phage integrase family protein
           [Aciduliprofundum boonei T469]
 gi|197621670|gb|EDY34257.1| site-specific recombinase, phage integrase family protein
           [Aciduliprofundum boonei T469]
 gi|197622284|gb|EDY34858.1| site-specific recombinase, phage integrase family protein
           [Aciduliprofundum boonei T469]
          Length = 299

 Score = 93.9 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 33/229 (14%), Positives = 83/229 (36%), Gaps = 18/229 (7%)

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
           + + S+    ++   ++ ++   F +         +  L   R + K     P T ++++
Sbjct: 51  AELRSKGTKTTTLNYYVKALNRYFAF------RGADIKLKYYRHRTKDTIWIP-TDDEVK 103

Query: 181 QFKS----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIIT 234
           +  S     + +  + R        +G+R  +        L   N++  I+T+K+G    
Sbjct: 104 RILSVRWRRYDQDLRNRAMLHIAFSTGVRLGELIALNWADLDETNHLLEIRTEKSGGTRL 163

Query: 235 VELPDGFMKLL----AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGV 289
           V +P   ++LL     +  +            +++       FK    +AGV K  +H  
Sbjct: 164 VPIPPKVLELLIQYRKVRILSDPNAMFTTYGGRISNAYARKIFKEAGERAGVKKFHSHAA 223

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338
           R + A    + G +   +    G  ++   + Y +      +  +  ++
Sbjct: 224 RHWRAVKWLEEGLSLETIRRLLGHSSLKSTQIYLRARSVNSIFEEVVKK 272


>gi|15609796|ref|NP_217175.1| phiRv2 prophage integrase [Mycobacterium tuberculosis H37Rv]
 gi|148662501|ref|YP_001284024.1| integrase [Mycobacterium tuberculosis H37Ra]
 gi|148823850|ref|YP_001288604.1| phiRv2 prophage integrase [Mycobacterium tuberculosis F11]
 gi|167967175|ref|ZP_02549452.1| integrase [Mycobacterium tuberculosis H37Ra]
 gi|215404625|ref|ZP_03416806.1| integrase [Mycobacterium tuberculosis 02_1987]
 gi|215412458|ref|ZP_03421200.1| integrase [Mycobacterium tuberculosis 94_M4241A]
 gi|215428087|ref|ZP_03426006.1| integrase [Mycobacterium tuberculosis T92]
 gi|215446918|ref|ZP_03433670.1| integrase [Mycobacterium tuberculosis T85]
 gi|218754399|ref|ZP_03533195.1| integrase [Mycobacterium tuberculosis GM 1503]
 gi|219558668|ref|ZP_03537744.1| integrase [Mycobacterium tuberculosis T17]
 gi|253798259|ref|YP_003031260.1| phiRv2 phage integrase [Mycobacterium tuberculosis KZN 1435]
 gi|254232768|ref|ZP_04926095.1| hypothetical protein TBCG_02599 [Mycobacterium tuberculosis C]
 gi|254365323|ref|ZP_04981368.1| hypothetical phiRv2 prophage integrase [Mycobacterium tuberculosis
           str. Haarlem]
 gi|254551713|ref|ZP_05142160.1| integrase [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
 gi|260187679|ref|ZP_05765153.1| integrase [Mycobacterium tuberculosis CPHL_A]
 gi|289448314|ref|ZP_06438058.1| phiRv2 phage integrase [Mycobacterium tuberculosis CPHL_A]
 gi|289553554|ref|ZP_06442764.1| phiRv2 phage integrase [Mycobacterium tuberculosis KZN 605]
 gi|289570833|ref|ZP_06451060.1| phiRv2 phage integrase [Mycobacterium tuberculosis T17]
 gi|289746460|ref|ZP_06505838.1| integrase [Mycobacterium tuberculosis 02_1987]
 gi|289751310|ref|ZP_06510688.1| phiRv2 phage integrase [Mycobacterium tuberculosis T92]
 gi|289758787|ref|ZP_06518165.1| integrase [Mycobacterium tuberculosis T85]
 gi|289762830|ref|ZP_06522208.1| phiRv2 prophage integrase [Mycobacterium tuberculosis GM 1503]
 gi|294994246|ref|ZP_06799937.1| integrase [Mycobacterium tuberculosis 210]
 gi|297635270|ref|ZP_06953050.1| integrase [Mycobacterium tuberculosis KZN 4207]
 gi|297732266|ref|ZP_06961384.1| integrase [Mycobacterium tuberculosis KZN R506]
 gi|298526131|ref|ZP_07013540.1| phiRv2 prophage integrase [Mycobacterium tuberculosis 94_M4241A]
 gi|306776941|ref|ZP_07415278.1| phiRv2 phage integrase [Mycobacterium tuberculosis SUMu001]
 gi|306780842|ref|ZP_07419179.1| phiRv2 phage integrase [Mycobacterium tuberculosis SUMu002]
 gi|306785466|ref|ZP_07423788.1| phiRv2 phage integrase [Mycobacterium tuberculosis SUMu003]
 gi|306790064|ref|ZP_07428386.1| phiRv2 phage integrase [Mycobacterium tuberculosis SUMu004]
 gi|306798562|ref|ZP_07436864.1| phiRv2 phage integrase [Mycobacterium tuberculosis SUMu006]
 gi|306804424|ref|ZP_07441092.1| phiRv2 phage integrase [Mycobacterium tuberculosis SUMu008]
 gi|306807539|ref|ZP_07444207.1| phiRv2 phage integrase [Mycobacterium tuberculosis SUMu007]
 gi|306968713|ref|ZP_07481374.1| phiRv2 phage integrase [Mycobacterium tuberculosis SUMu009]
 gi|306973054|ref|ZP_07485715.1| phiRv2 phage integrase [Mycobacterium tuberculosis SUMu010]
 gi|307080762|ref|ZP_07489932.1| phiRv2 phage integrase [Mycobacterium tuberculosis SUMu011]
 gi|307085356|ref|ZP_07494469.1| phiRv2 phage integrase [Mycobacterium tuberculosis SUMu012]
 gi|313659599|ref|ZP_07816479.1| integrase [Mycobacterium tuberculosis KZN V2475]
 gi|81556700|sp|P71956|INT2_MYCTU RecName: Full=Putative prophage phiRv2 integrase
 gi|1550700|emb|CAB02359.1| PROBABLE phiRv2 PROPHAGE INTEGRASE [Mycobacterium tuberculosis
           H37Rv]
 gi|124601827|gb|EAY60837.1| hypothetical protein TBCG_02599 [Mycobacterium tuberculosis C]
 gi|134150836|gb|EBA42881.1| hypothetical phiRv2 prophage integrase [Mycobacterium tuberculosis
           str. Haarlem]
 gi|148506653|gb|ABQ74462.1| integrase [Mycobacterium tuberculosis H37Ra]
 gi|148722377|gb|ABR07002.1| hypothetical phiRv2 prophage integrase [Mycobacterium tuberculosis
           F11]
 gi|253319762|gb|ACT24365.1| phiRv2 phage integrase [Mycobacterium tuberculosis KZN 1435]
 gi|289421272|gb|EFD18473.1| phiRv2 phage integrase [Mycobacterium tuberculosis CPHL_A]
 gi|289438186|gb|EFD20679.1| phiRv2 phage integrase [Mycobacterium tuberculosis KZN 605]
 gi|289544587|gb|EFD48235.1| phiRv2 phage integrase [Mycobacterium tuberculosis T17]
 gi|289686988|gb|EFD54476.1| integrase [Mycobacterium tuberculosis 02_1987]
 gi|289691897|gb|EFD59326.1| phiRv2 phage integrase [Mycobacterium tuberculosis T92]
 gi|289710336|gb|EFD74352.1| phiRv2 prophage integrase [Mycobacterium tuberculosis GM 1503]
 gi|289714351|gb|EFD78363.1| integrase [Mycobacterium tuberculosis T85]
 gi|298495925|gb|EFI31219.1| phiRv2 prophage integrase [Mycobacterium tuberculosis 94_M4241A]
 gi|308214684|gb|EFO74083.1| phiRv2 phage integrase [Mycobacterium tuberculosis SUMu001]
 gi|308326345|gb|EFP15196.1| phiRv2 phage integrase [Mycobacterium tuberculosis SUMu002]
 gi|308329888|gb|EFP18739.1| phiRv2 phage integrase [Mycobacterium tuberculosis SUMu003]
 gi|308333504|gb|EFP22355.1| phiRv2 phage integrase [Mycobacterium tuberculosis SUMu004]
 gi|308341179|gb|EFP30030.1| phiRv2 phage integrase [Mycobacterium tuberculosis SUMu006]
 gi|308346032|gb|EFP34883.1| phiRv2 phage integrase [Mycobacterium tuberculosis SUMu007]
 gi|308348986|gb|EFP37837.1| phiRv2 phage integrase [Mycobacterium tuberculosis SUMu008]
 gi|308353711|gb|EFP42562.1| phiRv2 phage integrase [Mycobacterium tuberculosis SUMu009]
 gi|308357551|gb|EFP46402.1| phiRv2 phage integrase [Mycobacterium tuberculosis SUMu010]
 gi|308361496|gb|EFP50347.1| phiRv2 phage integrase [Mycobacterium tuberculosis SUMu011]
 gi|308365102|gb|EFP53953.1| phiRv2 phage integrase [Mycobacterium tuberculosis SUMu012]
 gi|323718743|gb|EGB27903.1| phiRv2 phage integrase [Mycobacterium tuberculosis CDC1551A]
 gi|328458031|gb|AEB03454.1| phiRv2 phage integrase [Mycobacterium tuberculosis KZN 4207]
          Length = 375

 Score = 93.9 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 51/286 (17%), Positives = 98/286 (34%), Gaps = 31/286 (10%)

Query: 85  GSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRK-HTPSSAIQFLTSMRV 142
             +   +R  +    D  I+    D D R IT   +R    +    TP+      + +R 
Sbjct: 88  RGIKDRTRAHYRKLLDNHILATFADTDLRDITPAAVRRWYATTAVGTPTMRAHSYSLLRA 147

Query: 143 LFKWAVRQEYVAINPCL-SVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201
           + + A+  + +  NPC  S     R+   IRP T ++++       +  Q  +      +
Sbjct: 148 IMQTALADDLIDSNPCRISGASTARRVHKIRPATLDELETITKAMPDPYQAFV--LMAAW 205

Query: 202 SGLRCSDSCRAGVQHLQ---------------NNIFSIKTQKTGTII-TVELPDGFMKLL 245
             +R  +      + +                   F + T K+   +  + +P   +  +
Sbjct: 206 LAMRYGELTELRRKDIDLHGEVARVRRAVVRVGEGFKVTTPKSDAGVRDISIPPHLIPAI 265

Query: 246 ------AMTPIGKETFF--INNDKQKMNATQFSIWFKAKATKAG-VNKSAHGVRKFSATI 296
                  + P  +   F  +N+  + +  +     F      AG  +   H +R   A +
Sbjct: 266 EDHLHKHVNPGRESLLFPSVNDPNRHLAPSALYRMFYKARKAAGRPDLRVHDLRHSGAVL 325

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGAD-RIRLGIKNSRRISS 341
           +A  GAT  ELM   G  T   A  Y   A  R R       +++ 
Sbjct: 326 AASTGATLAELMQRLGHSTAGAALRYQHAAKGRDREIAALLSKLAE 371


>gi|256839225|ref|ZP_05544735.1| integrase [Parabacteroides sp. D13]
 gi|256740144|gb|EEU53468.1| integrase [Parabacteroides sp. D13]
          Length = 310

 Score = 93.9 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 47/299 (15%), Positives = 99/299 (33%), Gaps = 33/299 (11%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTK---HIRSGVESRKH 128
            I+  R+   +     +S  S++   +  +R  G     Y +I  +     +  +  R+ 
Sbjct: 13  YIARLREQGRY-----SSAKSYQDALNSFLRFCGQEVIPYTRIDREMLLRYQDYLRDREC 67

Query: 129 TPSSAIQFLTSMRVLFKWAVRQE------YVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           + ++   ++  +R ++  A+         Y+     + V+  ++K   +       M   
Sbjct: 68  SWNTVSTYMRRIRRVYGLAMENGEAPFSRYLFKGIFMGVKSKQKKALPMESLRL-LMTAP 126

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
                     R      L+ G+   D        ++N +     QKTGT + VE+     
Sbjct: 127 LDDSGLRKTQRALCLMFLFCGMAFVDFAHLKKSDIRNGVLRYNRQKTGTPMLVEIQPVAK 186

Query: 243 KLLAM----TPIGKETFFINNDKQKMNATQFS----------IWFKAKATKAGVNK--SA 286
           +LLA     T       F      K     F              K  A   GV +  ++
Sbjct: 187 ELLAALMTDTLRDSPYLFTFLSGTKTGEEAFREYTSALADFNSSLKELANACGVTEMVTS 246

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345
           + +R   AT   + G     +    G +++   + Y K     ++   N     S+ ++
Sbjct: 247 YSIRHSFATTLKEQGVPIEMISELLGHQSIKTTQIYLKSFSLDKMSAVNKACFESIYNN 305


>gi|168789851|ref|ZP_02814858.1| integrase [Escherichia coli O157:H7 str. EC869]
 gi|261227840|ref|ZP_05942121.1| phage integrase [Escherichia coli O157:H7 str. FRIK2000]
 gi|261258426|ref|ZP_05950959.1| putative integrase [Escherichia coli O157:H7 str. FRIK966]
 gi|189370614|gb|EDU89030.1| integrase [Escherichia coli O157:H7 str. EC869]
 gi|323163435|gb|EFZ49261.1| integrase [Escherichia coli E128010]
          Length = 312

 Score = 93.9 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 49/301 (16%), Positives = 98/301 (32%), Gaps = 12/301 (3%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRK-SAHWGS 86
             G+RIR  +  +S  +      L          NS  ++P ++  LI  + K       
Sbjct: 6   RKGKRIRKKFKTKSDAVLYERWVLAQQHNNEWKGNSIDRRPLSV--LIDLWWKYHGQLMK 63

Query: 87  LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKW 146
              N+R+      + +           + T+ +R     +   PS+  + + ++  +F  
Sbjct: 64  SGHNTRLKLLRLSEAMDDPCVHKLNTTMLTE-LRVSRIEQGIQPSTINREIGALSAMFTA 122

Query: 147 AVRQEY-VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLR 205
            +   + +  NP   ++  K     +   +K +  Q     +E    RLA E LL +G R
Sbjct: 123 LISSGHFLNDNPVQGLKGMKVNEREMGYLSKSECVQLLDALAENPDERLAVEILLSTGAR 182

Query: 206 CSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN 265
             +      + + +   +    K     TV + +   +   +   G +  F   D   + 
Sbjct: 183 WGEVAALEQRRVLHCRITFSKTKNSKNRTVPISESLFE--KIKKRGGKLVFPTLD-YPLV 239

Query: 266 ATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
                   K  A      ++ H +R   A+     G     L    G   +     Y   
Sbjct: 240 RD----VIKTVAPDVPDGQAVHALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIYAHL 295

Query: 326 A 326
           A
Sbjct: 296 A 296


>gi|329955587|ref|ZP_08296495.1| site-specific recombinase, phage integrase family [Bacteroides
           clarus YIT 12056]
 gi|328525990|gb|EGF53014.1| site-specific recombinase, phage integrase family [Bacteroides
           clarus YIT 12056]
          Length = 330

 Score = 93.9 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 39/265 (14%), Positives = 87/265 (32%), Gaps = 20/265 (7%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129
           L+  Y  +      +  +   ++S  D +           +TT  IR+ +    E RK +
Sbjct: 55  LLQAYLSAKKIEGCSEKTIGYYQSTIDTLFVAV-CKPVCDVTTNDIRNYLSGYQEQRKVS 113

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
             +           F W   ++++  +P   + R + ++      T E+M+  +    E 
Sbjct: 114 RVTIDNMRRIFSSFFAWLEDEDFIVKSPVRRIHRVRTESLVKEVLTDENMEVLRDSCQE- 172

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT----QKTGTIITVELPDG----F 241
            +     + L  +G+R  +      + +    F  +      K      V          
Sbjct: 173 IRDIAMIDLLASTGMRVGELVNLNREDID---FHERQCVVFGKGNKEREVYFNARTKIHL 229

Query: 242 MKLLAMTPIGKETFF--INNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISA 298
              L+         F  ++N   +++ +   +  +    K  + K   H  R+  AT++ 
Sbjct: 230 QNYLSSRTDDNPALFVSLSNPHSRLSISGVEVRLRTLGRKVNIAKVHPHKFRRTLATMAI 289

Query: 299 DAGATAHELMATYGWKTVDQAETYT 323
           D G    ++    G   +D    Y 
Sbjct: 290 DKGMPIEQVQRLLGHVKIDTTLHYA 314


>gi|322689216|ref|YP_004208950.1| phage integrase [Bifidobacterium longum subsp. infantis 157F]
 gi|320460552|dbj|BAJ71172.1| putative phage integrase [Bifidobacterium longum subsp. infantis
           157F]
          Length = 391

 Score = 93.9 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 59/347 (17%), Positives = 111/347 (31%), Gaps = 41/347 (11%)

Query: 11  VTKERTRHGKIIYY--FRKGHGRRIRLPY---PHESTFIPAYMSALTGSTPKREYINSPR 65
           +T+ RT  G+  Y   +RK  G +          ++    A    +  +T         +
Sbjct: 4   ITRYRTAKGENRYRVRYRKPDGTQTDKRGFRRKIDAETWAAEHVTIAKATGSYIDPEGGK 63

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
           ++  TL        K   W + + ++  S  ++      K  +     IT   +++ V S
Sbjct: 64  QRIGTLHDQWIA-EKKPFWKATSGSNMDS--AWKCHCEAKWAERQIGSITHAEVQAWVGS 120

Query: 126 --RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP--WTKEDMQQ 181
              K    S  +    M+ +   AVR + ++ NPC  +E P+      R    T   +  
Sbjct: 121 IIDKSGAPSVSRPYQIMQGICSMAVRDKLISSNPCDGIELPRLPKRKDRRIYLTITRLLA 180

Query: 182 FKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQH--LQNNIFSIKTQ-------- 227
             +        G + R     L + GLR  ++     +       I  ++          
Sbjct: 181 LANEASNCRKLGEERRALILLLGFCGLRWGEAAGLQRRDLDFDAGILHVRRNLVYVNAKW 240

Query: 228 -----KTGTIITVELPDGFMKLLAMTPIGKET---FFINNDKQKMNATQFSI---WFKAK 276
                K      V +P   M  L      +E     F +     +     +    W+   
Sbjct: 241 AEGTPKNHERRDVPMPRIVMDALKPICEQREHEERVFRDVRGGPIRKQSLARETGWWTHT 300

Query: 277 ATKAGVNKS----AHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
            T+ G  +      H +R  +A+++  AGA    L    G K     
Sbjct: 301 LTRLGWKRDDWPVPHDLRHTAASLAVHAGANVKALQRMLGHKNASMT 347


>gi|313900781|ref|ZP_07834273.1| site-specific recombinase, phage integrase family [Clostridium sp.
           HGF2]
 gi|312954451|gb|EFR36127.1| site-specific recombinase, phage integrase family [Clostridium sp.
           HGF2]
          Length = 397

 Score = 93.9 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 60/377 (15%), Positives = 110/377 (29%), Gaps = 59/377 (15%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
            ++ K     G   Y +          P P      P+            E       K 
Sbjct: 24  KYLYKYVDAFGNTKYVYAWRLTP--TDPTPKGKREKPSLRELEQQIRRDIEDGIDSTGKK 81

Query: 69  TTLKWLISEY-RKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRSGVESR 126
            T   L   Y +++A   ++  +++   E     +   K G      I     +      
Sbjct: 82  MT---LCQLYAKQNAQRANVKKSTQKQREQLMRLLKEDKLGARSIDTIKPSDAKEWALRM 138

Query: 127 KHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPC--LSVERPKRKTEGIRPWTKEDMQQ 181
           K      ++      S++  F  A++ + V  NP      E  +  T+     T+E  Q 
Sbjct: 139 KDKGFSYNTINNHKRSLKASFYIAIQDDCVRKNPFDFKLSEVLENDTKEKVALTEEQEQA 198

Query: 182 FKSFWSEGSQPRLAFE---FLLYSGLRCSDSCRAGVQHLQ----------------NNIF 222
             SF    +     ++    LL +GLR S+ C   +  +                    +
Sbjct: 199 LLSFIKTDNVYHKYYDDVLILLKTGLRISELCGLTMADIDFANEVVVIDHQLLKSKEQGY 258

Query: 223 SIKTQKTGTIIT-VELPDGFMKLLAMTPIG------------KETFFINNDKQKMNATQF 269
            I+T KT + +  V L    ++                    K+  FIN+  +   A  +
Sbjct: 259 YIETPKTKSGVRNVPLSKETIQAFHRVIKKRSKIRSMEIDGHKDFLFINSKGKPKVAIDY 318

Query: 270 SIWF--------KAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVD---- 317
           +  F        K    +   + + H +R    T  A       +L    G   +     
Sbjct: 319 TTLFVRMVKKYNKHHKDRLLPHITPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISITMN 378

Query: 318 ---QAETYTKGADRIRL 331
               A   T  ++  RL
Sbjct: 379 WYAHASIDTAKSEVQRL 395


>gi|298244935|ref|ZP_06968741.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
 gi|297552416|gb|EFH86281.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
          Length = 389

 Score = 93.9 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 56/367 (15%), Positives = 118/367 (32%), Gaps = 46/367 (12%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
             +H    +  R   G+  R    +++        A      +R+      ++  T K  
Sbjct: 22  VVQHADGRWVARVPLGKGKRKEEYYKTKQEAE--RAKRRMLNERDAGKLVTEQEQTFKDY 79

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITT---KHIRSGVESRKHTP 130
           +  Y  +AH  ++   + I +  Y + +II        RK+T    + +    E  K +P
Sbjct: 80  L-AYWLNAHRTTVRKTTYIMYSKYLETRIIPVLVHVGLRKLTLEMFQSLYQKWEQEKLSP 138

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           ++       +      AV+ + +A NP  +V+ PK +   I   + E++++      E  
Sbjct: 139 NTIRLIHGIISEALNDAVKWKKLAYNPAQNVKLPKPRKTKIYVLSDEEIERLLQCAQE-M 197

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII----------------- 233
                F   L  G+R  +        +     ++  Q+T + +                 
Sbjct: 198 HLHALFRMALLLGMRAGELLALRWSDINFKKRALTIQRTVSYVNDPAIGHYDFHVGPPKT 257

Query: 234 -----TVELP----DGFMKLLAMTP---------IGKETFFINNDKQKMNATQFSIWFKA 275
                T+ LP    D  ++                 ++  F       +      ++F  
Sbjct: 258 EAGERTIHLPLDIVDVLLEHREKQTQMRVSSPHWKDQDLVFCTRFGNYLTPASVRVFFDR 317

Query: 276 KATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKG-ADRIRLG 332
               AG+     H +R  ++ I           M   G  ++D  + TY     D  +  
Sbjct: 318 LLKAAGLEHMKFHALRHNASRILRQLKIDPVVRMEMLGHTSLDMTDGTYGHATRDMHKEA 377

Query: 333 IKNSRRI 339
            +   R+
Sbjct: 378 AEEINRL 384


>gi|254003129|ref|YP_003052595.1| integrase family protein [Methylovorus sp. SIP3-4]
 gi|253987212|gb|ACT52068.1| integrase family protein [Methylovorus sp. SIP3-4]
          Length = 380

 Score = 93.9 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 45/254 (17%), Positives = 82/254 (32%), Gaps = 26/254 (10%)

Query: 92  RISFES---YFDQIIR-KSGDFDYRKITTKHIRSGVESR-------KHTPSSAIQF---L 137
           +  +E      +QI R   G    R  T+  I S  + R          P +A      L
Sbjct: 21  KKGYEQEKFRIEQICRSPLGSLVVRNATSVDIASFRDDRLSQVNQKTKKPIAASTVRLEL 80

Query: 138 TSMRVLFKWA-VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP--RL 194
           + +   F    +       NP  +V +PK      R  T  + +Q   +    S      
Sbjct: 81  SLLSSFFDICRIEWGLCESNPVTNVRKPKAPPGRDRRLTPREDRQILRYAHSHSNQEFYS 140

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNN--IFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252
                L + +R S+  +   +HL     I  +   K G+   V L       L    +  
Sbjct: 141 IVILALETAMRQSEIIKLCWEHLDLKSRIAHLPDTKNGSKRDVPLSAKARDALIRLGVKS 200

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAG-ATAHELMAT 310
           +            ++     ++    K G+ +   H +R  + +   + G     E+ A 
Sbjct: 201 KGNVFT-----YTSSGIKSTWRFMLGKLGIEDLHFHDMRHEAISRFFELGSLDMMEIAAI 255

Query: 311 YGWKTVDQAETYTK 324
            G K++   + YT 
Sbjct: 256 SGHKSLSMLKRYTH 269


>gi|110640480|ref|YP_668208.1| phage integrase [Escherichia coli 536]
 gi|14594860|emb|CAC43408.1| integrase of Shigella flexneri bacteriophage X [Escherichia coli]
 gi|110342072|gb|ABG68309.1| phage integrase [Escherichia coli 536]
          Length = 386

 Score = 93.9 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 46/275 (16%), Positives = 94/275 (34%), Gaps = 26/275 (9%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
           K +IS +        L+  +        D +  +    ++     + +R G    ++ P 
Sbjct: 80  KSIISFWMLHFRETILSDITTEKIMEAVDGMENRRHRLNWEMSRDRCLRLGKPVPEYKPK 139

Query: 132 SAI-----QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            A      + L  +R +   AV   ++   P   +  P+ K   IR  T+E+ ++  +  
Sbjct: 140 LASKGTKTRHLAILRAILNMAVEWGWLDRTP--KISTPRVKNGRIRWLTEEESKRLFAEI 197

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGFM 242
           +    P + F     +GLR S+        +  +           K G  I V L +   
Sbjct: 198 APHFFPVVMFAIT--TGLRRSNVTDLEWSQVDLDKKMAWMHPDETKAGNAIGVPLNETAC 255

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFS------------IWFKAKATKAGV-NKSAHGV 289
           ++L       + +   + K    +                  +K    +AG+ N   H +
Sbjct: 256 QILRKQQGLHKRWVFVHTKPAYRSDGTKTAAVRKMRTDSNKAWKGALKRAGISNFRFHDL 315

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           R   A+    +G +   L    GW+T++  + Y  
Sbjct: 316 RHTWASWLVQSGVSLLALKEMGGWETLEMVQRYAH 350


>gi|239621464|ref|ZP_04664495.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|239515925|gb|EEQ55792.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
          Length = 391

 Score = 93.9 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 59/347 (17%), Positives = 112/347 (32%), Gaps = 41/347 (11%)

Query: 11  VTKERTRHGKIIYY--FRKGHGRRIRLPY---PHESTFIPAYMSALTGSTPKREYINSPR 65
           +T+ RT  G+  Y   +RK  G +          ++    A    +  +T         +
Sbjct: 4   ITRYRTAKGENRYRVRYRKPDGTQTDKRGFRRKIDAETWAAEHVTIAKATGSYIDPEGGK 63

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
           ++  TL    +   K   W + + ++  S  ++      K  +     IT   +++ V S
Sbjct: 64  QRIGTLHDQWTA-EKKPFWKATSGSNMDS--AWKCHCEAKWAERQIGSITHAEVQAWVGS 120

Query: 126 --RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP--WTKEDMQQ 181
              K    S  +    M+ +   AVR + ++ NPC  +E P+      R    T   +  
Sbjct: 121 IIDKSGAPSVSRPYQIMQGICSMAVRDKLISSNPCDGIELPRLPKRKDRRIYLTITRLLA 180

Query: 182 FKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQH--LQNNIFSIKTQ-------- 227
             +        G + R     L + GLR  ++     +       I  ++          
Sbjct: 181 LANEASNCRKLGEERRALILLLGFCGLRWGEAAGLQRRDLDFDAGILHVRRNLVYVNAKW 240

Query: 228 -----KTGTIITVELPDGFMKLLAMTPIGKET---FFINNDKQKMNATQFSI---WFKAK 276
                K      V +P   M  L      +E     F +     +     +    W+   
Sbjct: 241 AEGTPKNHERRDVPMPRIVMDALKPICEQREHEERVFRDVRGGPIRKQSLARETGWWTHT 300

Query: 277 ATKAGVNKS----AHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
            T+ G  +      H +R  +A+++  AGA    L    G K     
Sbjct: 301 LTRLGWKRDDWPVPHDLRHTAASLAVHAGANVKALQRMLGHKNASMT 347


>gi|323139026|ref|ZP_08074085.1| integrase family protein [Methylocystis sp. ATCC 49242]
 gi|322395686|gb|EFX98228.1| integrase family protein [Methylocystis sp. ATCC 49242]
          Length = 426

 Score = 93.9 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 56/362 (15%), Positives = 114/362 (31%), Gaps = 43/362 (11%)

Query: 21  IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRK 80
            I+  R+    ++    P E+      + A               +   T+  L  +Y +
Sbjct: 49  PIWRTRRLAFAKVGTITPEEARARARRLLADAAEGGDPSAERHEARSALTVAELCDQYLE 108

Query: 81  SAHWGSLAVNSRISFE---------SYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT-- 129
           +A  G +    R                  I    G     KIT   ++   ++      
Sbjct: 109 AARAGLVLTRFRKPKRASTIAIDEGRVARHIAPLIGKKVASKITRADLQRMADAIAAGKT 168

Query: 130 -----------------PSSAIQFLTSMRVLFKWAVRQEYVA-INPCLSVERPKRKTEGI 171
                              +A + +  +  ++ WA ++  V   NP   VE  +   +  
Sbjct: 169 AATIRTKMRGVARVEGGAGTAARVVELIGGIWSWAEKRGLVEGANPARGVETHRGDAK-D 227

Query: 172 RPWTKEDMQQF----KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK 225
           R  T E++ +     +   +    P  A   +  +G R  + C      +   N+   ++
Sbjct: 228 RILTAEELARLGVVLREQEAVRPAPVAALRIIALTGARREEICSLRWNEIDAANSCLRLQ 287

Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS 285
             KTG  +   +    + LLA  P   +  F N                     AG+  +
Sbjct: 288 ETKTGRSMR-PIGRAVLDLLATLPRAGDFVFPNRTGD--GHADMKKALADLFDAAGLKDT 344

Query: 286 -AHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADRIRLGIKNSRRISSVV 343
            +H +R+  A+++AD G     +    G       A  Y +  D   +    + R+S+ +
Sbjct: 345 RSHDLRRTFASVAADEGYGDATIGELLGHARRGVTARHYIRRPDAALVA--AADRVSACI 402

Query: 344 DS 345
            +
Sbjct: 403 SA 404


>gi|260590882|ref|ZP_05856340.1| putative integrase [Prevotella veroralis F0319]
 gi|260537173|gb|EEX19790.1| putative integrase [Prevotella veroralis F0319]
          Length = 421

 Score = 93.9 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 48/287 (16%), Positives = 103/287 (35%), Gaps = 33/287 (11%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK---HIRS-GVESRK 127
           K  +  +R S    +L + +R             +GD   ++       H R   +    
Sbjct: 130 KATVRAFRDSRKNFALFLKTRG------------NGDCLPKEADKDLIEHYRLFMLRDLG 177

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           +  S+    L  +  + + A++Q Y+  +P   ++  +  T      T +D+ +  S+  
Sbjct: 178 NKESTVSNRLRHLHQVIRKALQQRYIREDPFELID-IETPTYERNALTSDDLHKLLSYRP 236

Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHL---QNNI--FSIKTQKTGTIITVELPD 239
             S     RL F    ++GL  SD  +  +  +    +     S+   KT     V L  
Sbjct: 237 HRSVDNHCRLIFLLGCFTGLAFSDLKKLRMDDVYTLDDGRRYISLCRTKTQNRSIVPLLP 296

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN----KSAHGVRKFSAT 295
              ++L +   G++   +   ++    + F+   +    KAG+      ++H  R   AT
Sbjct: 297 IAEEILTIVSDGQKEGLL--FREFPTNSHFNRKIRDIIIKAGLPSHTEATSHTARHTFAT 354

Query: 296 IS-ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
               + G     +    G + +   E Y K   + ++  +    + S
Sbjct: 355 TICLENGLPIETVSKMLGHRFISTTELYAK-VSKSKIAREMQPLMGS 400


>gi|153954207|ref|YP_001394972.1| site-specific tyrosine recombinase XerC [Clostridium kluyveri DSM
           555]
 gi|146347088|gb|EDK33624.1| Predicted recombinase [Clostridium kluyveri DSM 555]
          Length = 328

 Score = 93.9 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 47/236 (19%), Positives = 93/236 (39%), Gaps = 20/236 (8%)

Query: 119 IRSGVESRKHTPSSAI-QFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
             S +E+ +H  S A  + + S++  FK+   + + ++ NP L +E P+         + 
Sbjct: 86  FISFIENYRHNKSYARARKVASLKSFFKYLCSKAKLISENPALELESPQISKRNPIYLSL 145

Query: 177 EDMQQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234
           ++ +          + R      F L  G+R S+ C   + +++ +  ++   K     T
Sbjct: 146 KESKLLLESIDGKFKERDYCIITFFLNCGMRLSELCSINISNIKEDTLTVI-GKGNKERT 204

Query: 235 VELPDGFMKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN- 283
           + L    ++ L                K+  FI+ +  ++N     I  K    KA ++ 
Sbjct: 205 IYLNKSCLEALKNYLTSRDEYLNKIKDKDALFISKNYARINKRSVEIMLKKYLKKANLDS 264

Query: 284 --KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGAD-RIRLGIKN 335
              + H +R  +AT+    G      L    G + V   + YT   D R+R  IK+
Sbjct: 265 EKYTPHKLRHTAATLMYKYGHVDIRSLQKILGHENVSTTQIYTHVDDERLREAIKS 320


>gi|154244121|ref|YP_001415079.1| integrase family protein [Xanthobacter autotrophicus Py2]
 gi|154158206|gb|ABS65422.1| integrase family protein [Xanthobacter autotrophicus Py2]
          Length = 342

 Score = 93.9 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 41/273 (15%), Positives = 88/273 (32%), Gaps = 30/273 (10%)

Query: 82  AHWGSLAVNSRISFESYF--------DQIIRKSGDFDYRKITTKHIRSGVESRKH---TP 130
           AH   L+  +  ++            D +    G  D   +TT  +R+ + +R+     P
Sbjct: 36  AHERRLSPKTLEAYARDLAVVLLRLTDHLGACPGLGDLAGLTTADVRAVLAARRADGVAP 95

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
            + ++ L + R   +   R+    +    +V  PK      +P +    +      +   
Sbjct: 96  RTLVRLLAAARSFGRHLEREGLGKVGALTAVRAPKVPRSLPKPVSIAAARALSDPTTRAG 155

Query: 191 QPR---------LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-----E 236
           + R              L  +GLR S++     + +  +  SI     G    +      
Sbjct: 156 EDREDWVLARDAAVIALLYGAGLRISEALSLTPRDVPADAESITVTGKGRKTRMVPLIAP 215

Query: 237 LPDGFMKLLAMTPIG---KETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRK 291
           +     +  A+ P     +   F       ++     +  +      G+ +SA  H +R 
Sbjct: 216 VRRSIAEYRAICPHALGPEGPLFRGTRGGPLSPRIVQLAVERMRGALGLPQSATPHALRH 275

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK 324
             AT     G     +    G  ++   + YT+
Sbjct: 276 AFATHLLSRGGEIRAIQELLGHASLSTTQIYTE 308


>gi|186681294|ref|YP_001864490.1| phage integrase family protein [Nostoc punctiforme PCC 73102]
 gi|186463746|gb|ACC79547.1| phage integrase family protein [Nostoc punctiforme PCC 73102]
          Length = 370

 Score = 93.9 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 53/291 (18%), Positives = 107/291 (36%), Gaps = 37/291 (12%)

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127
           P TL  L   +  S    SL+V +R   + ++  I ++    +   + T      +    
Sbjct: 84  PQTLLELWDYWVDS---LSLSVATR---QHHYKAIRQQILKANPDLMDT----LWLTKSN 133

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              S+  Q L  ++  ++WA+ +     NP   ++  +  T+ I+P+T  +++     + 
Sbjct: 134 LGASTFNQRLGYLKRCYRWAISKNLGNSNPYDELKTRRVCTKSIKPFTSREIKVIIQGFE 193

Query: 188 EGSQPRLAF-EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ------------------- 227
           E +     F +FLL +G+R S++      H+  +   +  Q                   
Sbjct: 194 ESAMHYAPFIKFLLATGVRTSEAIGLRWCHVDFDQGFVTIQESLSRDWAGNGYQRVRKET 253

Query: 228 KTGTIITVELPDGFMKLLAMTPIGK----ETFFINNDKQKMNATQF--SIWFKAKATKAG 281
           KTG+   +E+ +    LL      K       F     + ++   F    W K       
Sbjct: 254 KTGSNRQLEMTEELRGLLWSLKPSKTDPDSLVFTTVKGKPIDDGNFRERYWVKVLTKVGV 313

Query: 282 VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRL 331
             +  +  R  +A+ + D G +   +    G K      +TY    +R +L
Sbjct: 314 DYRRPYTTRHTTASHAIDQGTSVTGVAYLLGHKDTRMVMQTYAHLVNRPKL 364


>gi|319937020|ref|ZP_08011430.1| transposon integrase [Coprobacillus sp. 29_1]
 gi|319807956|gb|EFW04535.1| transposon integrase [Coprobacillus sp. 29_1]
          Length = 410

 Score = 93.9 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 64/391 (16%), Positives = 115/391 (29%), Gaps = 82/391 (20%)

Query: 13  KERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPA-------YMSALTGSTPKREYINSPR 65
               R  K     RKG  +R      ++  +          Y   L     K + I+  +
Sbjct: 2   ANTKRKDKSRKVLRKGESQRPD--GTYQFRWTDENRKRHCIYARNLDDLRYKEDEIDKDK 59

Query: 66  KKPTTLKWLISEYRKSAH-WGSLAV----NSRISFESYFDQIIR-KSGDFDYRKITTKHI 119
           K     +   +        W  L      N+  +++  ++  +R + G      I    I
Sbjct: 60  KDGIKAEARYTSLNDMYELWRDLKRGIKNNTFENYKYMYETFVRNQIGSQFIMSIKKTDI 119

Query: 120 RSG----VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER-PKR----KTEG 170
           +      V+ R   P++     T +  +F+ AV  +Y+  NP  +V R  K+    KTE 
Sbjct: 120 KRYYNSLVDDRHLKPATIDSIHTVLHQVFEMAVDDDYIRSNPTDNVLRELKKSHCFKTEK 179

Query: 171 IRPWTKEDMQQFKSFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI------ 221
            R  TK + + F  +     E       F  ++ +GLR  +        +          
Sbjct: 180 RRALTKPEQELFLEYLKNTPEAQYWYPIFAVMVGTGLRVGELTGLRWCDIDLEEGIIDVN 239

Query: 222 ------------------FSIKTQKTGTIIT-VELPD-------------GFMKLLAMTP 249
                             F++ T KT   +  V + +               + L     
Sbjct: 240 HTLVYYDHRTEGSKKGCYFNVNTTKTPAGMRQVPMLEFVKEAFLMEKERQELLGLHCEAT 299

Query: 250 IGKET--FFINNDKQKMNATQFSIWFKAKATKAG--------------VNKSAHGVRKFS 293
           +   T   F+N   Q  +    +   +                      + S H +R   
Sbjct: 300 VDGYTDFVFVNRFGQPQHQATLNKAIRRIIRNCNDKQFLESENPEVLLPHFSCHSLRHTF 359

Query: 294 ATISADAGATAHELMATYGWKTVDQA-ETYT 323
            T   +AG     +    G K V      YT
Sbjct: 360 TTRMCEAGVNVKVIQDALGHKDVSTTLNIYT 390


>gi|186681250|ref|YP_001864446.1| phage integrase family protein [Nostoc punctiforme PCC 73102]
 gi|186463702|gb|ACC79503.1| phage integrase family protein [Nostoc punctiforme PCC 73102]
          Length = 400

 Score = 93.9 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 54/320 (16%), Positives = 100/320 (31%), Gaps = 44/320 (13%)

Query: 44  IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISF-ESYFDQI 102
           +  Y   L         + SPR   T L  L  +Y         A   R  +   Y + I
Sbjct: 74  LERYKEKLESYKKPLLTLVSPRTPQTDLMELWEQYCAYMKPQLAATTYRRDYARKYTNHI 133

Query: 103 IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINP----C 158
                    + +T           + +P++A + LT +    KWA+       NP     
Sbjct: 134 KG----LPTKDLTQAIAIRDHLLTQLSPNAAKRVLTYLAACCKWAMGSGLAKDNPFAGMS 189

Query: 159 LSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF-EFLLYSGLRCSDSCRAGVQHL 217
             ++ PK  ++ I P++K++M      +         F +FL ++G R  ++     +H+
Sbjct: 190 EDIKLPKHDSDAIDPFSKQEMNNIIQAFETTRAHYAPFVKFLFWTGCRTGEAIALQWKHI 249

Query: 218 Q------------NNIFSIKTQ-KTGTIITVELPDGFMKLLAMTPIGK----ETFFINND 260
                        ++  +I+   KTG            +LL              F +  
Sbjct: 250 NPECTQINFCESYDSQLNIRKGTKTGKARKFPCNTQVRELLLSIRPQDINLESQVFTSPT 309

Query: 261 KQKMNATQFSI--WFKAKATKAGVNKSAHGV---------------RKFSATISADAGAT 303
              ++ T+FS   W   + +    N    G+               R    T+  + G T
Sbjct: 310 GGIISNTRFSTQVWKGGRTSNKNYNGVMQGLLDAGEIERYRCPYNTRHTFITLMLEQGLT 369

Query: 304 AHELMATYGWKTVDQAETYT 323
              +    G       + Y 
Sbjct: 370 VSTVAKLVGNSPEIILKHYA 389


>gi|313634565|gb|EFS01051.1| toxin-antitoxin system, toxin component, PIN family [Listeria
           seeligeri FSL N1-067]
          Length = 381

 Score = 93.9 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 47/296 (15%), Positives = 96/296 (32%), Gaps = 51/296 (17%)

Query: 82  AHWGSLAVNSRISFESYFDQ--------IIRKSGDFDYRKITTKHIRSGVESR-KHTPSS 132
           + W  L   ++   ES  ++        I+    D    KI     +  + +  K  P+S
Sbjct: 77  STWLELY--TQTVKESTLERTKIFFNHHILPVFSDKFIDKIDIHFCQQVINAWSKSNPTS 134

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSV-----ERPKRKTEGIRPWTKEDMQQFKSFWS 187
             +       +FK+A+    +  +P   V     E  +++ + I  + K +++ F     
Sbjct: 135 YKRLKNLTSRVFKYAISLHLIESDPFAFVVVPRGEMIEKEEKDITFYDKYELRSFLDTVK 194

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----------------IFSIKTQKTGT 231
           + +     F  L ++GLR S++     Q +  N                   + T KT  
Sbjct: 195 DDTFKYTFFYLLAFTGLRKSEALALTWQDVDLNNKRLYINKTLSRGEHARILVNTTKTKA 254

Query: 232 -IITVELP----DGFMKLL-------AMTPIGKETFFINNDK----QKMNATQFSIWFKA 275
               + +     D   K          +  + K     +N           +     FK 
Sbjct: 255 GKRDISIDASTVDVLKKWKSYQRGNHHILRLDKVQIIFDNKGNYYNPSSTYSWLDNIFKH 314

Query: 276 KATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIR 330
                 +  ++HG R   A++  +AGA+  ++    G   +      YT      +
Sbjct: 315 HTELKKI--TSHGFRHTHASLLFEAGASLKDVQERLGHADIQTTSNIYTHVTQEKK 368


>gi|218262162|ref|ZP_03476721.1| hypothetical protein PRABACTJOHN_02394 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223568|gb|EEC96218.1| hypothetical protein PRABACTJOHN_02394 [Parabacteroides johnsonii
           DSM 18315]
          Length = 406

 Score = 93.9 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 54/323 (16%), Positives = 113/323 (34%), Gaps = 40/323 (12%)

Query: 43  FIPAYMS-ALTGST-PKREYINSPRKKPTTLKWLISEYRKSAHW------GSLAVNSRIS 94
           F   Y    L G     R  +N  + K  T K L + +++             A  +   
Sbjct: 77  FYQIYQDLELEGKIISARAIVNRYQGKDETFKTLYNVFKEHNDNCRKLIGTDYADITVRR 136

Query: 95  FESYFDQIIR------KSGDFDYRKITTKHIRSGVESRKH----TPSSAIQFLTSMRVLF 144
           +++    ++       K  D   R++  + +R      K       ++ I+++   + + 
Sbjct: 137 YDNCLKYLMELVRRDYKVDDMLLREVNGELVRKFDLYLKTEKHCAQNTVIRYMKCFKKVI 196

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF---KSFWSEGSQPRLAFEFLLY 201
             A+  E++  NP   ++  + +    +  ++ ++ +    +         R  F F +Y
Sbjct: 197 NLAIANEWLTKNPFAGIKFHEVEVNK-QFLSQAEINRIWQKEFRIERLELVRDVFIFCVY 255

Query: 202 SGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVEL---PDGFMKLLAMTP--IG 251
           +GL   D      +H+  +           +KT  +  + L   P   ++     P  + 
Sbjct: 256 TGLAFIDVYNLRPEHISEDSNGNLWIVKPREKTNNLCNIPLLSIPKQILEKYKDNPYCMD 315

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG-ATAHELM 308
           K T       QKMN+     + K  A   G+ K  + H  R   A++ A A   +   + 
Sbjct: 316 KGTLLPVPCNQKMNS-----YLKEIADLCGIKKNLTTHTARHSFASVIALANNVSLPNVA 370

Query: 309 ATYGWKTVDQAETYTKGADRIRL 331
              G  +    + Y K  D+  L
Sbjct: 371 KMLGHSSTRMTQHYAKVLDQTIL 393


>gi|171464293|ref|YP_001798406.1| integrase family protein [Polynucleobacter necessarius subsp.
           necessarius STIR1]
 gi|171193831|gb|ACB44792.1| integrase family protein [Polynucleobacter necessarius subsp.
           necessarius STIR1]
          Length = 333

 Score = 93.9 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 47/309 (15%), Positives = 92/309 (29%), Gaps = 50/309 (16%)

Query: 65  RKKPTTLKWLISEYRKSAH-WGSLAVNSRISFESYFD-----QIIRKSGDFDYRKITTKH 118
           + K T L  L+ EY    H    L+ ++  ++           +              + 
Sbjct: 2   KLKATELHPLMQEYLHELHVLRQLSPHTLKAYGMDLSDLQNFALEDTVELLKVSNGHVRR 61

Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEY------------VAINPCLSVERPKR 166
               + S+  +P S  + L++ R  + W   ++             +  NP   V+ PKR
Sbjct: 62  WAGRLHSKGKSPRSIARTLSAWRGWYDWLSEKDARRDVHAGKVTSALVANPVDDVKAPKR 121

Query: 167 KTEGIRPWTKEDM---------QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG---- 213
                +  + E           +  +    E  +       L  SGLR S+         
Sbjct: 122 PKSLPKALSVEQALALVNQAVKEAEEKKDLESIRDAAIIGLLYSSGLRLSELLGIDVIQS 181

Query: 214 --VQHLQNNIFSIKT------QKTGTIITVELPDGFMKLLAMT---------PIGKETFF 256
              QH                 K G   +V +    MK LA                  F
Sbjct: 182 KDRQHESAGWLDWDAAEVTVLGKGGKRRSVPVGVPAMKSLAAWRELRDDGSYAEESIALF 241

Query: 257 INNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWK 314
           ++   ++++        +  A +AG+  +   H +R   A+    +      +    G  
Sbjct: 242 LSATGKRLSPRTVQARLRTLAMRAGLPTHVHPHMMRHSFASHVLQSSQDLRAVQEMLGHA 301

Query: 315 TVDQAETYT 323
           ++   + YT
Sbjct: 302 SIASTQIYT 310


>gi|149916562|ref|ZP_01905077.1| site-specific recombinase, phage integrase family protein
           [Roseobacter sp. AzwK-3b]
 gi|149809536|gb|EDM69395.1| site-specific recombinase, phage integrase family protein
           [Roseobacter sp. AzwK-3b]
          Length = 363

 Score = 93.9 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 48/283 (16%), Positives = 94/283 (33%), Gaps = 33/283 (11%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIR----KSGDFDYRKITTKHIRSGVESRKH-- 128
           + ++ +  H+       R +  +           + G      I    +R   +  +   
Sbjct: 71  LDQFYRD-HFLPWYQTYRRNSTNIVQLYRSTYHIRYGHRHLHTICQDDLRKLTKEMQDLG 129

Query: 129 -TPSSAIQFLTSMRVLFKWAVRQEY------VAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
             P S  + +  +R + + A    Y      +   P L  + P+ +    R  ++E+  +
Sbjct: 130 YAPGSVNRTVVILRGMLRRADDWGYCKIHSSLQKPPNLLPDHPRHE----RFLSREEAHR 185

Query: 182 FKSFWSE--GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVEL 237
            ++       +   LA  FLLY+G R S+   A   H+      + I   K G   TV L
Sbjct: 186 LQAVLQRRGATPVNLAILFLLYTGARRSEVLNADWAHVDFARQEWRIPISKNGRPRTVIL 245

Query: 238 PDGFMKLLAMT-----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA 286
            D  + +L                   T F N    +     +  W + +A     +   
Sbjct: 246 SDRAVDILEQARAYQQRHFGKQARSVSTVFANPQTLQPYHNIWETWKRVRAEADLTDVRL 305

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           H +R   A+   +AG + +E+    G   +   + Y   A   
Sbjct: 306 HDLRHSYASTLINAGVSIYEVQKLLGHTNITTTQRYAHLASER 348


>gi|134093808|ref|YP_001098883.1| putative phage integrase [Herminiimonas arsenicoxydans]
 gi|133737711|emb|CAL60756.1| putative phage integrase [Herminiimonas arsenicoxydans]
          Length = 418

 Score = 93.9 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 56/332 (16%), Positives = 112/332 (33%), Gaps = 29/332 (8%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           R RHG        G    + L    ++      +  + G+ P  E   +   +  T++ L
Sbjct: 47  RFRHGNRRQEVTLGRYPDLSLAAARQAAARKR-IGIIDGTNPADEVRKAKANRDWTMREL 105

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
           I++YRK   +  LA N+++++     +I         + +  + I + +E  K   S   
Sbjct: 106 IADYRK-LVFSDLAKNTQLTYGRNLKRIENGMAAMSVQTVGPEDIIAQLERVKAGWSELF 164

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSV-------ERPKRKTEGIRPWTKEDMQQFKSFWS 187
                +R LFK A  ++ +  NPC  +       +RP  +   +   +++++    +   
Sbjct: 165 TLWMVLRGLFKHAAGKKIIFANPCAGIQLEAVIGKRPAIRRRLM--LSEDELTTVMN-AD 221

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKL- 244
             S   LA   LL +G+R S+   A  +++      + I   KTG  I + LP   +   
Sbjct: 222 MNSANLLAIHILLGTGVRSSELFTALKENVFLDEGRWHIPASKTGPAIDIPLPPVVVGWF 281

Query: 245 --LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN------------KSAHGVR 290
             L                ++M+             +  ++             + H +R
Sbjct: 282 HELLEIAGNSIYVLPARVYRRMDRYGGDAHISKDTIREAIDFWVEKQQPDIRRFTPHDLR 341

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETY 322
               +     G            K       Y
Sbjct: 342 STMKSHMRKLGVPRDISEMCLNHKVSGVEGIY 373


>gi|92116157|ref|YP_575886.1| site-specific tyrosine recombinase XerC [Nitrobacter hamburgensis
           X14]
 gi|91799051|gb|ABE61426.1| tyrosine recombinase XerC subunit [Nitrobacter hamburgensis X14]
          Length = 300

 Score = 93.9 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 38/280 (13%), Positives = 84/280 (30%), Gaps = 35/280 (12%)

Query: 85  GSLAVNSRISFESY----FDQIIRKSGD----FDYRKITTKHIRSGVESRKH---TPSSA 133
             L+  +  ++          + +  G+      +  +    +R+ + +R+       S 
Sbjct: 12  RRLSPKTCEAYARDARQCLMFLSQHWGELVTLKRFAALEASDVRAFMAARRADDIGGRSL 71

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
           ++ L  +R   ++  R+    +    ++  PK      +P      ++F        + R
Sbjct: 72  MRALAGLRSFARFLEREGLGKVGALSAIRAPKVGKSLPKPIQMSAAKRFADASERAGEDR 131

Query: 194 ---------LAFEFLLYSGLRCSDSCRAGVQHL---QNNIFSIKTQKTGTIITVELPDGF 241
                         L  SGLR S++     + +         + T K      V +    
Sbjct: 132 EPWIWARDAAVMALLYGSGLRISEALGLKRRDVPQPGAGDVLVVTGKGNKTRMVPVLQNV 191

Query: 242 MKLLA--------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRK 291
           + L+           P      F+      ++     +         G+    + H +R 
Sbjct: 192 LALVHEYVAVCPHSLPPEGP-IFVGARGGPLSPRIIQLTMARMRGALGLPDSATPHALRH 250

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
             AT     G     +    G  ++   + YT G D  RL
Sbjct: 251 SFATHLLSRGGDLRAIQELLGHASLSTTQIYT-GIDSERL 289


>gi|219854815|ref|YP_002471937.1| hypothetical protein CKR_1472 [Clostridium kluyveri NBRC 12016]
 gi|219568539|dbj|BAH06523.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 355

 Score = 93.9 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 47/236 (19%), Positives = 93/236 (39%), Gaps = 20/236 (8%)

Query: 119 IRSGVESRKHTPSSAI-QFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
             S +E+ +H  S A  + + S++  FK+   + + ++ NP L +E P+         + 
Sbjct: 113 FISFIENYRHNKSYARARKVASLKSFFKYLCSKAKLISENPALELESPQISKRNPIYLSL 172

Query: 177 EDMQQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234
           ++ +          + R      F L  G+R S+ C   + +++ +  ++   K     T
Sbjct: 173 KESKLLLESIDGKFKERDYCIITFFLNCGMRLSELCSINISNIKEDTLTVI-GKGNKERT 231

Query: 235 VELPDGFMKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN- 283
           + L    ++ L                K+  FI+ +  ++N     I  K    KA ++ 
Sbjct: 232 IYLNKSCLEALKNYLTSRDEYLNKIKDKDALFISKNYARINKRSVEIMLKKYLKKANLDS 291

Query: 284 --KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGAD-RIRLGIKN 335
              + H +R  +AT+    G      L    G + V   + YT   D R+R  IK+
Sbjct: 292 EKYTPHKLRHTAATLMYKYGHVDIRSLQKILGHENVSTTQIYTHVDDERLREAIKS 347


>gi|94984539|ref|YP_603903.1| phage integrase [Deinococcus geothermalis DSM 11300]
 gi|94554820|gb|ABF44734.1| phage integrase [Deinococcus geothermalis DSM 11300]
          Length = 291

 Score = 93.9 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 34/268 (12%), Positives = 84/268 (31%), Gaps = 15/268 (5%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE---SRK 127
           +   I E+++          +   +     +++      +   +T   +   +     R 
Sbjct: 3   VADAIEEFQREHKARGSTPRTVKWYGETLRRLLTDHLSENVEALTPFTLSRALNIAGERG 62

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
             P++   +  ++R    W    E +  +P  + +RP  + +  +  T E+++       
Sbjct: 63  IRPATLANYDRALRGFTAWLHGVELLPRDPMKAKKRPVVRWQMKQVATPEEIRTLFELAR 122

Query: 188 E----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
                  +       L   GLR  +     +  +  +  ++K         V +     +
Sbjct: 123 RDKRYADRNCAILALLAGCGLRAGEVASLKLTDVDWHGSAVKVSGKTGERIVPMDRTTQR 182

Query: 244 LLAMTPI-----GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATI 296
           LL               F+ +  + + A   +      + +AG  +  + H +R  +AT 
Sbjct: 183 LLRRYVTHGRRGNHPNVFLFS-GRPIKAMTLTHLLSRMSDRAGFTRRVTPHLLRHTAATT 241

Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324
               G     L    G  T++    Y  
Sbjct: 242 YLRNGGDVASLRRILGHATINTTALYLH 269


>gi|323187008|gb|EFZ72325.1| integrase [Escherichia coli RN587/1]
          Length = 312

 Score = 93.9 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 49/301 (16%), Positives = 98/301 (32%), Gaps = 12/301 (3%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRK-SAHWGS 86
             G+RIR  +  +S  +      L          NS  ++P ++  LI  + K       
Sbjct: 6   RKGKRIRKKFKTKSDAVLYERWVLAQQHNNEWKGNSIDRRPLSV--LIDLWWKYHGQLMK 63

Query: 87  LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKW 146
              N+R+      + +           + T+ +R     +   PS+  + + ++  +F  
Sbjct: 64  SGHNTRLKLLRLSEAMDDPCVHKLNTTMLTE-LRVSRIEQGIQPSTINREIGALSAMFTA 122

Query: 147 AVRQEY-VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLR 205
            +   + +  NP   ++  K     +   +K +  Q     +E    RLA E LL +G R
Sbjct: 123 LISSGHFLNDNPVQGLKGMKVNEREMGYLSKSECVQLLDALAENPDERLAVEILLSTGAR 182

Query: 206 CSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN 265
             +      + + +   +    K     TV + +   +   +   G +  F   D   + 
Sbjct: 183 WGEVAALEQRRVLHCRITFSKTKNSKNRTVPISENLFE--KIKKRGGKLVFPTLD-YPLV 239

Query: 266 ATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
                   K  A      ++ H +R   A+     G     L    G   +     Y   
Sbjct: 240 RD----VIKTVAPDVPDGQAVHALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIYAHL 295

Query: 326 A 326
           A
Sbjct: 296 A 296


>gi|315029442|gb|EFT41374.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX4000]
          Length = 392

 Score = 93.9 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 62/392 (15%), Positives = 123/392 (31%), Gaps = 72/392 (18%)

Query: 1   MTPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60
           M    R    +T      GKI +YF+     R       E+    AY+        K++ 
Sbjct: 1   MENMSRFKKHITAT----GKITWYFQAFRTTRRGFNSKREAQL--AYLEMEKQHRNKQKR 54

Query: 61  INS-PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119
           + S  +    + KW   EY +S +     V +    E     + R  G      ++++ +
Sbjct: 55  LASNDKFSVVSQKWF--EYYRSLN--EQKVATYDKREEQVKILNRWIGGKKLSSLSSEEL 110

Query: 120 RSGVESRKHT----------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK-- 167
           +  +   K             +S    +  + ++F +  ++  +  NP   V+ PK +  
Sbjct: 111 QKFLFILKEKGIDGVNVGYAKNSLQSLVQVLNMVFNYCKKKNLINENPMKFVKMPKYQLS 170

Query: 168 ---------TEGIRPWTKEDMQQFKSF--WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216
                    +   +  T ++++ F ++    E     + F  L Y+G   S++     Q 
Sbjct: 171 LKDLKESVNSLEDKFLTVDELRAFLNYGIVYEELPMCVLFHVLFYTGCCVSEALALQPQD 230

Query: 217 LQNNI-----------------FSIKTQKT-GTIITVELPD-------GFMKLLAMTPIG 251
           +                     F I+T KT  +   V +           + +L  T   
Sbjct: 231 IDFERNEILFYKQTAVKGKSKDFRIETTKTVSSARRVPVTPLVMEKLQELIDVLNKTKRN 290

Query: 252 -----KETFFI-----NNDKQKMNATQFSIWFKAKATKAGVNKSAHG--VRKFSATISAD 299
                 ET+                   +   K    + G+NK  H    R   A++ A+
Sbjct: 291 SNFVVDETYLFVYLDPGKRGVPYRREYVNDHVKRCVERCGINKDFHTHLARHTMASLVAE 350

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRL 331
              +   L    G      ++ Y       +L
Sbjct: 351 Y-CSWDVLKDRLGHTDSTTSKIYRHLTSTEKL 381


>gi|262381977|ref|ZP_06075115.1| integrase/site-specific recombinase [Bacteroides sp. 2_1_33B]
 gi|301310515|ref|ZP_07216454.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           20_3]
 gi|262297154|gb|EEY85084.1| integrase/site-specific recombinase [Bacteroides sp. 2_1_33B]
 gi|300832089|gb|EFK62720.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           20_3]
          Length = 310

 Score = 93.9 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 48/304 (15%), Positives = 104/304 (34%), Gaps = 41/304 (13%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVESRKH 128
            I++  +   +     +S  S++   +  IR SG          K   +   + +     
Sbjct: 13  YIAQLNREKRY-----SSAKSYQDALNSFIRYSGTDCIAYSAINKDNLRRYEAYLLENGC 67

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCL------SVERPKRKTEGIRPWTKEDMQQF 182
             ++   ++  +R ++  AV        P L       VE  ++K+        ED+ + 
Sbjct: 68  MRNTISTYMRRLRCIYNKAVENGKAEFIPTLFKGIFTGVESKRKKS-----LPIEDLHRL 122

Query: 183 KSFWSEGSQPR---LAFEFL-LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
            +   E  + R   LA   + L+ G+   D       +++N I     QKTGT + +E+ 
Sbjct: 123 MTVPVEDGKQRKTQLALCLMFLFGGMSFVDFAHLKTGNIKNGILDYNRQKTGTPMRLEIL 182

Query: 239 D----GFMKLLAMTPIGKETFFINNDKQKMNAT----------QFSIWFKAKATKAGV-- 282
           +     + +L           F      +              +F+   KA    AG+  
Sbjct: 183 ETAETMYKELSGEKVRDSGYLFPFLSGTREGREEYLEYNAALFRFNRNLKALKEFAGITS 242

Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
           + +++ +R   A    +       +    G K++   + Y +     ++   NS     V
Sbjct: 243 DVTSYTIRHSFAMTLKEQNVPIEMISELLGHKSIKTTQIYLRSFSLGKMTEVNSACFGGV 302

Query: 343 VDSD 346
            + +
Sbjct: 303 YNYE 306


>gi|253563520|ref|ZP_04840977.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|251947296|gb|EES87578.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|301162178|emb|CBW21723.1| putative phage integrase protein [Bacteroides fragilis 638R]
          Length = 330

 Score = 93.9 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 34/282 (12%), Positives = 93/282 (32%), Gaps = 21/282 (7%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129
           L++ +  +      +  +   + +  ++++          ITT  IR+ +    E  + +
Sbjct: 55  LLNSFISAKKIEGCSEKTLTYYRNTIERLLVSL-SLAICHITTTDIRTYLSNYQEEHQSS 113

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
             +           F W   ++Y+A +P   + + K  +      + E ++Q +   +  
Sbjct: 114 KVTIDNMRRIFSSFFAWLEDEDYIAKSPVRRIHKVKTDSLVKEVLSDEQLEQLRDSCTT- 172

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT----QKTGTIITVELPDG----F 241
            +     +FL  +G+R  +  +   + +    F  +      K      V          
Sbjct: 173 KRDLAIIDFLSSTGIRVGELVKLNREDID---FHERQCVVFGKGNKERVVYFNARTKLHL 229

Query: 242 MKLLAMTPIGKETFFINNDKQK--MNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISA 298
            + L          F++       +  +   +  +       + K   H  R+  AT++ 
Sbjct: 230 QQYLNGRTDDNPALFVSLHSPHTRLTISGVEVRIRKLGHTLSMPKVHPHKFRRTLATMAI 289

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
           D G    ++    G   +D    Y    ++  + + + + + 
Sbjct: 290 DKGMPIEQVQRLLGHVRIDTTLHYA-IVNQNNVKLAHKKYLG 330


>gi|254437403|ref|ZP_05050897.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
 gi|198252849|gb|EDY77163.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
          Length = 372

 Score = 93.9 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 49/322 (15%), Positives = 113/322 (35%), Gaps = 20/322 (6%)

Query: 9   PFVTKERTRHGKIIYYFRK---GHGRRIRL-PYPHESTFIPAYMSALTGSTPKREYINSP 64
             +     +  K  +YF+K   G  +RI +  +P  S       +        R    + 
Sbjct: 38  KGLVLFVGKRSKT-WYFQKDVGGQTKRILIGRFPIISAQAARQTALGFALEMGRGAGKAA 96

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
           +    TL+  +  Y         +  ++I   +     ++        +I+   +    +
Sbjct: 97  QIGAPTLEAAMEGYLARPKLR--SETNKIGMRAQLSLHLKDWMRLPLDEISKGMMVRRHQ 154

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
           +   +PS+A   L S R ++  A R   +A  P +++E  + K +G         ++   
Sbjct: 155 AMSGSPSAANHVLRSFRAIYNHARRTCDLAECPTMAIEWFEDKPDGRIIENLRHWRKTID 214

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
                   R+ +E LL++GLR ++        +  +   +   K G    + +     ++
Sbjct: 215 DLPNPIH-RVFYELLLFTGLRKTEVFTLKWDQIHEDRIHLPMTKNGRSFDLPILQLHHEI 273

Query: 245 LAMT-PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGAT 303
           LA   P+ ++  F          ++     + +     +  + H  R+  AT++ +AG  
Sbjct: 274 LAPLRPLSRDWVF------PSPKSETGHITRPER----LKYNPHMHRRTFATVAMEAGVL 323

Query: 304 AHELMATYGWKTVDQA-ETYTK 324
              +        +    + Y K
Sbjct: 324 EEIVGRLLNHTPLSITGQRYVK 345


>gi|15964806|ref|NP_385159.1| putative integrase protein [Sinorhizobium meliloti 1021]
 gi|15073984|emb|CAC45625.1| Putative integrase [Sinorhizobium meliloti 1021]
          Length = 310

 Score = 93.9 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 44/267 (16%), Positives = 88/267 (32%), Gaps = 14/267 (5%)

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSR-ISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
           K TTL  L+  Y     W          +F    D+I+  +    + +     +   +  
Sbjct: 37  KETTLAELLQRY-ADILWDEGRHKYNVKAFIGELDEILLGARFSAFSQELLDGLIGALRK 95

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           R ++ ++  + + ++  L + A +   +   P    +R K K   +R    ++ +     
Sbjct: 96  RGNSNATINRKMAALGKLLRKAYKMGDIHNLP--EFKRQKEKAGRLRFLEADEEEVLFRE 153

Query: 186 WSEGSQPRLAFEFLLY-SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
            +  S+  L     L  +G R  ++       +     +    K+G   TV L       
Sbjct: 154 IASRSELYLYLSIFLVDTGARLGEAIALKWNDIHEGRATFWVTKSGRSRTVPLTVRAKDA 213

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV----NKSAHGVRKFSATISADA 300
           L          F   D+QK     +   + A    AG+    +   H +R   A+     
Sbjct: 214 LKRVADRSPGPFSRIDQQK-----YRAVWNAAKVDAGLGNEDDLVPHILRHTCASRLVRG 268

Query: 301 GATAHELMATYGWKTVDQAETYTKGAD 327
           G     +    G +T++    Y   A 
Sbjct: 269 GIDLRRVQMWLGHQTLEMTMRYAHLAS 295


>gi|172034883|ref|YP_001798679.1| integrase/recombinase [Cyanothece sp. ATCC 51142]
 gi|171701647|gb|ACB54625.1| integrase/recombinase [Cyanothece sp. ATCC 51142]
          Length = 362

 Score = 93.9 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 44/298 (14%), Positives = 83/298 (27%), Gaps = 68/298 (22%)

Query: 101 QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
            + R       R     + R  VE + +  ++    LT +R  +  AV +  +  NP L 
Sbjct: 52  HVQRLHPLDATRDDIKLYRRWLVEIQDYKCATIALKLTVVRRFYAGAVERGLILANPALG 111

Query: 161 VERPKRKTEGIRP---WTKEDMQQFKSFWSE-----GSQPRLAFEFLLYSGLRCSDSCRA 212
           ++ P+   +         + ++    +         G + R     ++  G R  +  RA
Sbjct: 112 IKPPRENIDPAERINYLEEAEVTGLLASLPTENTIGGLRDRFLVAVMVLEGCRTVEMHRA 171

Query: 213 GVQHL--QNNIFSIKTQKTGTIITVELPDGFMKLLAM----------TPIGKETFFI--- 257
            +  +  + +   I+     +   V L     KLL               G    FI   
Sbjct: 172 SIGDIVKRGSDIGIRVSGKRSRRIVPLTPDLAKLLNKYLQARKRSGEALNGDTPLFIALD 231

Query: 258 -NNDKQKMNATQFSIWFKAKATKAGVN--------------------------------- 283
                 +++              AG+                                  
Sbjct: 232 KRTYGGRLSRRSIQRVIDKYLRAAGLKEQPTKHKSKKRASNKSHQPSNGEKQNSSQSASA 291

Query: 284 -----------KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
                       SAH +R  + T++  AG+   ++    G         Y   ADR R
Sbjct: 292 KSHKFQQPQRQLSAHSLRHTAGTLAIRAGSDLRQVQDLLGHADPRTTALYAHVADRWR 349


>gi|325661848|ref|ZP_08150469.1| hypothetical protein HMPREF0490_01205 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325471826|gb|EGC75043.1| hypothetical protein HMPREF0490_01205 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 322

 Score = 93.9 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 36/265 (13%), Positives = 88/265 (33%), Gaps = 15/265 (5%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH----TPSSAIQFLTSMRVL 143
           +  +   +    D++++K      RKI+T+ IR  +   +     +  +      ++   
Sbjct: 61  SERTIQYYSVTVDKMLQKI-QTPVRKISTEEIRKYLVDYQKINDCSKVTVDNVRRNISSF 119

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203
           F W   ++Y+  +P   + + K K       + E ++  +       +     + L  +G
Sbjct: 120 FSWLEEEDYILKSPMRRIHKIKTKQPVKEIISDEAIEMLRDHCQCP-RDLAMIDLLYSTG 178

Query: 204 LRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDG----FMKLLAMTPIGKETFFIN 258
           +R  +     +  +       +   K      V          +  L+         F+ 
Sbjct: 179 IRVGELVNLNISDVDFEARECVVFGKGDKERRVYFDAKAKLHLLNYLSERKDNNPALFVT 238

Query: 259 ND--KQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKT 315
            D    ++  +   I  +    K  + K   H  R+  AT + D G    ++    G   
Sbjct: 239 LDVPYDRLKISGVEIRIRTLGRKLNMEKIHPHKFRRTMATRAIDKGMPIEQVQKLLGHSQ 298

Query: 316 VDQAETYTKGADRIRLGIKNSRRIS 340
           +D    Y    ++  +   + + I+
Sbjct: 299 IDTTMQYA-IVNQTNVKTSHQKFIA 322


>gi|291548984|emb|CBL25246.1| Site-specific recombinase XerD [Ruminococcus torques L2-14]
          Length = 397

 Score = 93.9 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 62/377 (16%), Positives = 111/377 (29%), Gaps = 59/377 (15%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
            ++ K     G   Y +          P P      P+            E       K 
Sbjct: 24  KYLYKYVDAFGNTKYVYAWRLTP--TDPTPKGKREKPSLRELEQQIRRDIEDGIDSTGKK 81

Query: 69  TTLKWLISEY-RKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRSGVESR 126
            T   L   Y +++A   ++  +++   E     +   K G      I     +      
Sbjct: 82  MT---LCQLYAKQNAQRANVKKSTQKQREQLMRLLKEDKLGARSIDTIKPSDAKEWALRM 138

Query: 127 KHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPC--LSVERPKRKTEGIRPWTKEDMQQ 181
           K      ++      S++  F  A++ + V  NP      E  +  T+     T+E  Q 
Sbjct: 139 KDKGFSYNTINNHKRSLKASFYIAIQDDCVRKNPFDFKLSEVLENDTKEKVALTEEQEQA 198

Query: 182 FKSFWSEGSQPRLAFE---FLLYSGLRCSDSCRAGVQHLQ----------------NNIF 222
             SF    +     ++    LL +GLR S+ C   V  +                    +
Sbjct: 199 LLSFIKTDNVYHNHYDDVLILLKTGLRISELCGLTVADIDFKNEVVIIDHQLLKSKEQGY 258

Query: 223 SIKTQKTGTIIT-VELPDG----FMKLLAMTPIGKET--------FFINNDKQKMNATQF 269
            I+T KT + I  V L       F +++   P  +           F+N+  +   A  +
Sbjct: 259 YIETPKTKSGIRQVPLSRETIQAFQQVMKKRPKAEPFVIDGQSNFLFVNHKGKPKVAIDY 318

Query: 270 SIWFKAKATKAGVNK--------SAHGVRKFSATISADAGATAHELMATYGWKTVD---- 317
           +  F     K   +         + H +R    T  A       +L    G   +     
Sbjct: 319 NALFVRMVKKYNKHHKDNPLPHITPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISITMN 378

Query: 318 ---QAETYTKGADRIRL 331
               A   T  ++  RL
Sbjct: 379 WYAHASIDTAKSEVQRL 395


>gi|227890200|ref|ZP_04008005.1| possible bacteriophage integrase [Lactobacillus johnsonii ATCC
           33200]
 gi|227849295|gb|EEJ59381.1| possible bacteriophage integrase [Lactobacillus johnsonii ATCC
           33200]
          Length = 391

 Score = 93.9 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 52/309 (16%), Positives = 106/309 (34%), Gaps = 50/309 (16%)

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGV 123
           ++K   +  L   + ++     +  ++    +  FD  +I   G+    KIT   ++   
Sbjct: 66  KQKQIKVAELRELWFENYK-TQVKESTANKNKQVFDNHVIPAFGNQYIDKITVAELQKWA 124

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-----PWTKED 178
           + +          +     LF++ +R  YV+ NP   +  PK+ +   R      +T+++
Sbjct: 125 DRKAKQIVKYRDAINEFNALFEYGIRLNYVSENPLKRIIIPKKTSRPRRDTEHNVYTRDE 184

Query: 179 MQQFKSFWSE-GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-------- 229
           + QF     + G  P   F+ L  +GLR S++       +     ++   KT        
Sbjct: 185 LNQFLEVAKDYGLVPYTYFKLLSATGLRKSEALALTWSDINLTAGTLSVNKTLAYGLNGK 244

Query: 230 ---------GTIITVELPDGFMKLL----AMTPIGKETFFINNDKQKMNATQFSIWFK-- 274
                     +   + + DG  ++L        I  +  F  N    +  ++   W K  
Sbjct: 245 TIIQPPKSPKSKRILPISDGLKEVLIDYKRKQKIISKELFHTNKGTYLRISKPDQWLKSI 304

Query: 275 ------AKATKAG-----------VNKSAHGVRKFSATIS-ADAGATAHELMATYGWKTV 316
                  KA  A             + + HG R   AT+  A+       +    G + +
Sbjct: 305 YAKDHEEKAEYAKKYNLKEPQPDLRHITVHGFRHTFATLLIAETNVKPKTVQMLLGHENI 364

Query: 317 DQA-ETYTK 324
               + YT 
Sbjct: 365 QMTLDIYTH 373


>gi|15921682|ref|NP_377351.1| integrase/recombinase [Sulfolobus tokodaii str. 7]
 gi|15622469|dbj|BAB66460.1| 284aa long hypothetical integrase/recombinase [Sulfolobus tokodaii
           str. 7]
          Length = 284

 Score = 93.9 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 41/245 (16%), Positives = 83/245 (33%), Gaps = 24/245 (9%)

Query: 84  WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL 143
           +      +  +++   +  IR        + T     + +E R+    +A  ++ ++   
Sbjct: 45  YIRKDPRTVTTYD--LNNWIRNI----LSRETKSKNENEIEKRRKKSVTARHYIIAVLRF 98

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203
            KW      V + P +    P+ + + IR  ++E++ + K    +  + RL  + LL +G
Sbjct: 99  LKWLG----VDVKPTI----PRIRRKEIRALSEEEIVKIKENVKK-LKDRLLIQLLLDTG 149

Query: 204 LRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLLAMTPI--GKETFFINN 259
           LR  +        +        ++  K G    V   +   +LL              N 
Sbjct: 150 LRSKELLSIKKSDINIERRYIIVRNTKNGEERIVFFTEETARLLKSYLRNIEDNGILFN- 208

Query: 260 DKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
               M         K    K G++   H +R   AT +   G     +    G K +   
Sbjct: 209 ----MTYHALYRKLKRLGKKLGIDLRPHILRHTFATQAIRKGMPLPVVQKLLGHKDIRTT 264

Query: 320 ETYTK 324
           + YT 
Sbjct: 265 QIYTH 269


>gi|331700415|ref|YP_004397374.1| integrase family protein [Lactobacillus buchneri NRRL B-30929]
 gi|329127758|gb|AEB72311.1| integrase family protein [Lactobacillus buchneri NRRL B-30929]
          Length = 383

 Score = 93.9 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 54/287 (18%), Positives = 101/287 (35%), Gaps = 44/287 (15%)

Query: 100 DQIIRKSGDFDYRKITTKHIRSGVESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVA-INP 157
           + I+ + G+   R IT   ++  V    K    +  ++      +F +A++  Y+   NP
Sbjct: 98  NHILPELGNKRIRTITIAQVQRAVNKWFKQATYNYKRWYEYTMAIFDYALKHGYMHGDNP 157

Query: 158 CLSVERPKRK-TEGIRP---WTKEDMQQFKSFWS--EGSQPRLAFEFLLYSGLRCSDSCR 211
              +  PKRK T G +P   W K+ + QF S+    E  +    F  L ++G+R  +   
Sbjct: 158 AKMITIPKRKETWGEKPENFWDKQQLAQFFSYIDPKEELEKYTLFRVLAFAGVRRGECLA 217

Query: 212 AGVQHL----------------QNNIFSIKTQKTGTIITVELPD---------------- 239
                +                      I+  KT     V   D                
Sbjct: 218 LTWNDVNFSKSTLSINKTLTQGMRGKQIIQPPKTKKGQRVIALDKITLNYLKQWRARQRR 277

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISA 298
            ++ L   T    +  F N++    +    + W         + K + HG R  SA++  
Sbjct: 278 EYLMLGFNTIQRGQLIFANSNNGFKSLNTPAKWLNKIIKAHNLKKITVHGFRHTSASMLF 337

Query: 299 DAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVVD 344
            AGAT  E+    G +        YT      +   + + ++++ +D
Sbjct: 338 AAGATIKEVQTRLGHEDAQTTLNIYTHVT--KKQDNQAAEKLANYLD 382


>gi|262382300|ref|ZP_06075437.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|262295178|gb|EEY83109.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
          Length = 408

 Score = 93.9 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 55/323 (17%), Positives = 113/323 (34%), Gaps = 40/323 (12%)

Query: 43  FIPAYMS-ALTGST-PKREYINSPRKKPTTLKWLISEYRKSAHW------GSLAVNSRIS 94
           F   Y    L G     R  +N  + K  T K L + +++             A  +   
Sbjct: 80  FYQIYQDLELEGKIISARAIVNRYQGKDETFKTLYNVFKEHNDNCRKLIGTDYADITVRR 139

Query: 95  FESYFDQIIR------KSGDFDYRKITTKHIRSGVESRKH----TPSSAIQFLTSMRVLF 144
           +++    ++       K  D   R++  + +R      K       ++ I+++   + + 
Sbjct: 140 YDNCLKYLMELVKRDYKVDDMLLREVNGELVRKFDLYLKTEKHCAQNTVIRYMKCFKKVI 199

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF---KSFWSEGSQPRLAFEFLLY 201
             A+  E++  NP   ++  + +    +  ++ ++ +    +         R  F F +Y
Sbjct: 200 NLAIANEWLTKNPFAGIKFHEVEVNK-QFLSQAEINRIWQKEFRIERLELVRDVFIFCVY 258

Query: 202 SGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVEL---PDGFMKLLAMTP--IG 251
           +GL   D      +H+  +           +KT  I  + L   P   ++     P  + 
Sbjct: 259 TGLAFIDVYNLRPEHVSEDSNGNLWIVKPREKTNNICNIPLLSIPKQILEKYKDNPYCMD 318

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG-ATAHELM 308
           K T       QKMN+     + K  A   G+ K  + H  R   A++ A A   +   + 
Sbjct: 319 KGTLLPVPCNQKMNS-----YLKEIADLCGIKKNLTTHTARHSFASVIALANNVSLPNVA 373

Query: 309 ATYGWKTVDQAETYTKGADRIRL 331
              G  +    + Y K  D+  L
Sbjct: 374 KMLGHSSTRMTQHYAKVLDQTIL 396


>gi|229060140|ref|ZP_04197510.1| DNA integration/recombination/invertion protein [Bacillus cereus
           AH603]
 gi|228719180|gb|EEL70790.1| DNA integration/recombination/invertion protein [Bacillus cereus
           AH603]
          Length = 249

 Score = 93.9 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 34/233 (14%), Positives = 71/233 (30%), Gaps = 32/233 (13%)

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           +        +  + +  +R   + A+  E ++ N     + PK   E +  W ++++Q F
Sbjct: 1   MRDEGLKRGTIEKIIKVIRNSLEHAIDIELISKNVAAKTKLPKADKEELTVWNEKEVQLF 60

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT----------GTI 232
                + S+  + F   L +G+R  +      + +      +  ++T          G  
Sbjct: 61  LKAAQD-SRYSIVFHLALVTGMRQGELLGLRWKDVDLEKGHLTIRQTLSHDGKTFLLGGK 119

Query: 233 ITVELPDGFMKLLAMTPIGK-------------------ETFFINNDKQKMNATQFSIWF 273
           I   L    +    +  + K                   +          +N        
Sbjct: 120 IKSSLRKILLPASTIAKLRKHRAVVLKEMLSQGGEYQENDLVMCTPSGTPINPANVRRSL 179

Query: 274 KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
            A   KA V K   H +R   AT+    G     +    G   +    +TY+ 
Sbjct: 180 NALIQKAAVPKVRFHDLRHTHATLLLAKGVNVKVISERLGHSNIKITLDTYSH 232


>gi|254438179|ref|ZP_05051673.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
 gi|198253625|gb|EDY77939.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
          Length = 376

 Score = 93.9 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 49/250 (19%), Positives = 87/250 (34%), Gaps = 17/250 (6%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWA 147
             N+   +    D   R  G     +IT   I++ +   K + S        +R L  WA
Sbjct: 107 KKNTVDYYRKRLDAHFR-FGRKRLDEITRTDIQTRIRKIKTSSSEQNHAFVVIRTLMNWA 165

Query: 148 VRQEYVAINPCLSVERPKRKTEGIRPWTKED-MQQFKSFWSEGSQPRLAFEFLLYSGLRC 206
           VR++YV  +P  S++ P +        T ++ +Q +K               L+ +G+R 
Sbjct: 166 VREQYVDQSPIASMKPPTKPQARDHVLTDQELIQAYKVSLEHPYPFGPIISLLVLTGMRR 225

Query: 207 SDSCRAGVQHLQNNIFSIK----TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ 262
           S+        + +   +I       K   + T+   D    +L   P      F +   +
Sbjct: 226 SEVASMRWDWISHGERTITIPADVTKNKRVQTLPYADLVEAVLETIPEIGPHLFPS---R 282

Query: 263 KMNATQFSIWFKAKAT-KAGV----NKSAHGVRKFSATISADAGATAHELMATYGWKTVD 317
               T F+ W K+K    A +      + H +R+  AT  A  G   H         +  
Sbjct: 283 SETGTVFNGWGKSKERFDASLENIEPYTLHDLRRTFATTHAKIGTPIHVTEKLLNHISGT 342

Query: 318 Q---AETYTK 324
               A  Y +
Sbjct: 343 ISGVAAVYNR 352


>gi|330429397|gb|AEC20731.1| site-specific recombinase, phage integrase family [Pusillimonas sp.
           T7-7]
          Length = 362

 Score = 93.9 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 46/306 (15%), Positives = 102/306 (33%), Gaps = 35/306 (11%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---- 126
           ++  +  Y +     +   +++I        +I+  G +    ++   +    ++R    
Sbjct: 61  VEAALKRYLREVT-PTKRESTQIGEHKKAQALIKHLGKYSLAALSADIVAQYRDARLAGD 119

Query: 127 -----KHTPSSAIQF---LTSMRVLFKWAVRQEY---VAINPCLSVERPKRKTEGIRPWT 175
                K  P S       L  +  LF  A++ E+   +  NP  ++ RP       R  T
Sbjct: 120 EDENGKRVPRSNNTVRLELALLGHLFTVAIK-EWGIGLPFNPVSNIRRPAPGAGRNRRLT 178

Query: 176 KEDMQQFKSFWSEGSQPRLAFEF--LLYSGLRCSDSCRAGVQHLQNNIFSIKTQ--KTGT 231
             + ++  +     S P  ++     L +G+R S+     +  +      ++ +  K  +
Sbjct: 179 PTENKRLLTAVDAYSNPMFSWIVRVALETGMRLSEIAGLRLGQVDMQKRVVRLEHTKNSS 238

Query: 232 IITVELPDGFMKLLAMT------PIGKETFFINNDKQ--KMNATQFSIWFKAKATKAGV- 282
             TV L      +          P   +  F     +        F   +      AG+ 
Sbjct: 239 PRTVPLTKAATSVFQAALDNPLRPPETDLVFFGEPGKDGMRRPYLFDKAWSDAKKAAGLV 298

Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
           +   H +R  + +   +AG +  E+ A  G K++   + YT              R+  +
Sbjct: 299 DFRFHDLRHEAVSRLVEAGLSDQEVAAISGHKSMQMLKRYTHLR-----AEDLVGRLDEL 353

Query: 343 VDSDDP 348
              + P
Sbjct: 354 ERRERP 359


>gi|256545162|ref|ZP_05472528.1| tyrosine recombinase XerC [Anaerococcus vaginalis ATCC 51170]
 gi|256399203|gb|EEU12814.1| tyrosine recombinase XerC [Anaerococcus vaginalis ATCC 51170]
          Length = 331

 Score = 93.9 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 83/224 (37%), Gaps = 21/224 (9%)

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
                  S+  + ++++R  +K+  ++ E +  N    +  PK +       T  + +  
Sbjct: 92  NELNDNTSTRSRKISALRSFYKYLHQEIEIIDNNITEKLRNPKIQKRQPVYLTLSETEHL 151

Query: 183 KSFWSEG------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
               S+       ++        L +G+R S+     ++ ++++ FSI   K     T+ 
Sbjct: 152 LEIVSQEKNEFLKNRDMAIVFTFLTTGMRLSELVSVDLKDIKDDHFSII-GKGNKERTIY 210

Query: 237 LPDGFMKLLAMTPIGK---------ETFFINNDKQKMNATQFSIWFKAKATKAGVN---K 284
           L    + L+      +         +  FI+  KQ+++        +    KAG +    
Sbjct: 211 LTKNCIDLIKNYIKIRKKYLKDKKIDALFISTRKQRISNRAVQSTVEKYLEKAGFDTKIY 270

Query: 285 SAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGAD 327
           S H +R  +AT+    G      L    G ++V   + YT   D
Sbjct: 271 STHKLRHTAATLMYKYGNVDIRALKDVLGHESVSTTQIYTHLDD 314


>gi|139439759|ref|ZP_01773150.1| Hypothetical protein COLAER_02181 [Collinsella aerofaciens ATCC
           25986]
 gi|133774909|gb|EBA38729.1| Hypothetical protein COLAER_02181 [Collinsella aerofaciens ATCC
           25986]
          Length = 220

 Score = 93.9 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 68/212 (32%), Gaps = 25/212 (11%)

Query: 150 QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFEFLLYSGLR 205
           +  V  +   ++  PK   +     T + ++            G +     E L  SG R
Sbjct: 4   EGIVEGDAVSAIASPKLPRDLPGVLTTQQVEALLKTPDTSTPAGLRDAAMLELLYASGAR 63

Query: 206 CSDSCRAGVQHLQNNIFSIK-TQKTGTIITVEL----------------PDGFMKLLAMT 248
            S+     V+ +  +  +++   K      V L                P+   +     
Sbjct: 64  ISELAALNVESIGWSERTLRLWGKGSKERIVPLYRRALEATRLYIEEGRPELLAQAKRRD 123

Query: 249 PIGKET-FFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAH 305
           P        I+    +M+A      F   AT AG+      H +R   AT   + GA   
Sbjct: 124 PATGPHPLLISARGNRMSAAMLRRRFHTLATLAGIPADIAPHAMRHTFATDLLEGGADLR 183

Query: 306 ELMATYGWKTVDQAETYTK-GADRIRLGIKNS 336
            +    G  ++   + YT    DR++  +  +
Sbjct: 184 SVQELLGHASLSTTQIYTHLTPDRLKRAVAQA 215


>gi|78184009|ref|YP_376444.1| site-specific recombinase XerD-like [Synechococcus sp. CC9902]
 gi|78168303|gb|ABB25400.1| Site-specific recombinase XerD-like [Synechococcus sp. CC9902]
          Length = 291

 Score = 93.9 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 35/267 (13%), Positives = 83/267 (31%), Gaps = 30/267 (11%)

Query: 88  AVNSRISFESYFDQIIR----KSGDFDYRKITTKHIRSGVESRKH-------TPSSAIQF 136
           +  +R  +      + R       D   R++    +++ ++  +         P +  + 
Sbjct: 15  SQETRDGYMRDLRHLTRWRDRHYPDLLIRELDPPMVQNWIDDLRGQVDAGEIKPRTFNRR 74

Query: 137 LTSMRVLFKWAVRQEY-----VAINPCLSVERPKRKTEGIRPWTKEDMQQF-------KS 184
           L+ +  LF+WA          +  NP    +      +  +  +++D+ +        + 
Sbjct: 75  LSVVSALFRWASEPSRSGVTGIGRNPVPG-KSHLVGGKEGKAMSEDDLSKLLGVVASSRD 133

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDG 240
             +  ++  +        G R S+  R     +          +  + +         D 
Sbjct: 134 RSARNNRDFVLIRGSYLLGARVSEVARLQWCDVEPLADGGQIHLLGKGSKARTVRVSADT 193

Query: 241 FMKLLAMTPIGKETFFI--NNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISA 298
                ++   G+  +    +  K  +     +   +    KAGV+   H +R   AT + 
Sbjct: 194 LQLFESLGRAGESDYLFPSSRTKSHLTRQAINYTMRKWGEKAGVDVHPHKLRHSHATHAI 253

Query: 299 DAGATAHELMATYGWKTVDQAETYTKG 325
             G     L  T G  + D    Y K 
Sbjct: 254 RRGTNVFCLQHTLGHSSTDTTSGYVKQ 280


>gi|194335806|ref|YP_002017600.1| integrase family protein [Pelodictyon phaeoclathratiforme BU-1]
 gi|254799350|sp|B4SDZ2|XERC_PELPB RecName: Full=Tyrosine recombinase xerC
 gi|194308283|gb|ACF42983.1| integrase family protein [Pelodictyon phaeoclathratiforme BU-1]
          Length = 336

 Score = 93.9 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 44/289 (15%), Positives = 89/289 (30%), Gaps = 49/289 (16%)

Query: 85  GSLAVNSRISFE----SYFDQIIRKSGDFDYRKITT--------KHIRSGVESRKHTPSS 132
            +L+ N+ I++      +F  + +  G  D              +   + +  R     S
Sbjct: 31  KNLSPNTVIAYRTDLFQFFSFLAQHLGLADLSLFDPEQVTTVEVRLFMAALIERGVRQRS 90

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS-- 190
             + L S++  +++     ++  +   ++  P+         T++  ++F +     S  
Sbjct: 91  IARKLASVKSFYRYLQESGHIRNSLFSALATPQYPKRVPGFLTEQQTEKFFNELLPQSAQ 150

Query: 191 -----------------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTI 232
                            + R   E L  SGLR S+     V  L      +K T K    
Sbjct: 151 GFRKPEKNELDESFICERDRSILELLYSSGLRISELIGLKVGELDLERGYVKLTGKGRKQ 210

Query: 233 ITVELPDGFMKLL-----------AMTPIGK----ETFFINNDKQKMNATQFSIWFKAK- 276
             V +    +  L            M   G        F+    +K+         +   
Sbjct: 211 RIVPVGQQAVDALKKYFEVRRNFFRMKRTGDAGELLHVFVTKSGKKLYPMLVQRLTRKYL 270

Query: 277 -ATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            +      K+ H +R   AT   ++GA  + +    G   +   E YT 
Sbjct: 271 TSVTDQKKKNPHLLRHTFATHLLNSGADLNSVSDMLGHSNLSTTEIYTH 319


>gi|241992601|gb|ACS73655.1| IntI1 [uncultured bacterium]
          Length = 315

 Score = 93.9 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 42/306 (13%), Positives = 92/306 (30%), Gaps = 62/306 (20%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129
           ++ + R+   +   ++ +  ++  +    IR  G      + +  + + +      RK +
Sbjct: 16  VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75

Query: 130 PSSAIQFLTSMRVLFK--WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            S+  Q L ++   +         ++       + RP+         T +++ +   F  
Sbjct: 76  VSTHRQALAALLFFYGKVLCTDLPWLQ-----EIGRPRPSRRLPVVLTPDEVVRILGFL- 129

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
           EG   RL  + L  +G+R S+  +  V+          ++  K      + LP+     L
Sbjct: 130 EGEH-RLFAQLLYGTGMRISEGLQLRVKDLDFDRGTIIVREGKGSKDRALMLPESLAPSL 188

Query: 246 AMTPIGKETFFINN---------------------------------------------D 260
                    +++ +                                              
Sbjct: 189 REQLSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVR 248

Query: 261 KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           +  M    F   FK    +AG+ K  + H +R   AT    +G     +    G   V  
Sbjct: 249 RHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVPT 308

Query: 319 AETYTK 324
              YT 
Sbjct: 309 TMIYTH 314


>gi|86139170|ref|ZP_01057740.1| tyrosine recombinase [Roseobacter sp. MED193]
 gi|85824014|gb|EAQ44219.1| tyrosine recombinase [Roseobacter sp. MED193]
          Length = 312

 Score = 93.9 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 39/236 (16%), Positives = 76/236 (32%), Gaps = 19/236 (8%)

Query: 107 GDFDYRKITTKHIRSGVESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163
           G     +ITT  +RS +   ++      S  + L++++  ++W   +E   +   L+   
Sbjct: 59  GLGALARITTSDMRSWMAQERNAGTGARSLARRLSAVKSFYRWLAEREGFELTAVLAARA 118

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWS-------EGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216
           PK + +  RP  ++  +                ++       L   GLR S++     + 
Sbjct: 119 PKFQKKLPRPLDEDAARAVIETVELQSNTDWIAARDVAVVTLLYGCGLRISEALALTGKT 178

Query: 217 LQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI-------GKETFFINNDKQKMNATQF 269
                      K G    V +     + +A                F       +N  Q 
Sbjct: 179 APLPSSLRILGKGGKERLVPVIAAAREAVARYIALSPYPNEADGPLFRGARGGALNPRQI 238

Query: 270 SIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
                    + G+  SA  H +R   AT   +AG     +    G  ++   + YT
Sbjct: 239 QGAMAQARAQLGLPASATPHALRHSFATHLLEAGGDLRAIQELLGHASLSTTQAYT 294


>gi|323169298|gb|EFZ54974.1| integrase [Shigella sonnei 53G]
          Length = 312

 Score = 93.9 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 49/301 (16%), Positives = 98/301 (32%), Gaps = 12/301 (3%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRK-SAHWGS 86
             G+RIR  +  +S  +      L          NS  ++P ++  LI  + K       
Sbjct: 6   RKGKRIRKKFKTKSDAVLYERWVLAQQHNNEWKGNSIDRRPLSV--LIDLWWKYHGQLMK 63

Query: 87  LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKW 146
              N+R+      + +           + T+ +R     +   PS+  + + ++  +F  
Sbjct: 64  SGHNTRLKLLRLSEAMDDPCVHKLNTTMLTE-LRVSRIEQGIQPSTINREIGALSAMFTA 122

Query: 147 AVRQEY-VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLR 205
            +   + +  NP   ++  K     +   +K +  Q     +E    RLA E LL +G R
Sbjct: 123 LISSGHFLNDNPVQGLKGMKVNEREMGYLSKSECVQLLDALAENPDERLAVEILLSTGAR 182

Query: 206 CSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN 265
             +      + + +   +    K     TV + +   +   +   G +  F   D     
Sbjct: 183 WGEVAALEQRRVLHCRITFSKTKNSKNRTVPISESLFE--KIKKRGGKLVFPTLD----- 235

Query: 266 ATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
            +      K  A      ++ H +R   A+     G     L    G   +     Y   
Sbjct: 236 YSLVRDVIKTVAPDVPDGQAVHALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIYAHL 295

Query: 326 A 326
           A
Sbjct: 296 A 296


>gi|305667872|ref|YP_003864346.1| shufflon-specific DNA recombinase [Escherichia coli]
 gi|304655621|emb|CBM42286.1| shufflon-specific DNA recombinase [Escherichia coli]
          Length = 374

 Score = 93.9 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 46/274 (16%), Positives = 95/274 (34%), Gaps = 19/274 (6%)

Query: 65  RKKPTTLKWLISEYRKSAHWGS---LAVNSRIS---FESYFDQIIRKSGDFDYRKITTKH 118
           + +  TL   + +Y K+        L    R++        ++ + +    D      + 
Sbjct: 6   KIRKMTLNRALDKYLKTVSIHKKGHLQEFYRVNVIKRHPMAERYMDEITTVDIATYRDQR 65

Query: 119 IRSG--VESRKHTPSSAIQFLTSMRVLFKWA-VRQEYVAINPCLSVERPKRKTEGIRPWT 175
           +        R+ T ++    L  +  LF  A V      +NP   V +PK  +   R  T
Sbjct: 66  LAQINPRTGRQITGNTVRLELALLSSLFNIASVEWGTCRMNPVELVRKPKISSGRDRRLT 125

Query: 176 KEDMQQF-KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTGTI 232
             + ++  + F  +  Q  + F   L + +R  +      +HL     +  +   K G  
Sbjct: 126 SGEERRLSRYFRDKNQQLYVIFHLALETAMRQGEILTLRWEHLDLQHGVAHLPETKNGLP 185

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRK 291
             V L       L + P       IN +     ++ F   ++       + N   H +R 
Sbjct: 186 RDVPLSRKARNYLQILPQQ-----INGNVFSYTSSGFKSAWRTALLDLKIENLHFHDLRH 240

Query: 292 FSATISADAG-ATAHELMATYGWKTVDQAETYTK 324
            + +   + G     E+ A  G ++++  + YT 
Sbjct: 241 EAISRFFELGTLNVIEVAAISGHRSLNMLKRYTH 274


>gi|284040174|ref|YP_003390104.1| integrase family protein [Spirosoma linguale DSM 74]
 gi|283819467|gb|ADB41305.1| integrase family protein [Spirosoma linguale DSM 74]
          Length = 378

 Score = 93.9 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 43/216 (19%), Positives = 73/216 (33%), Gaps = 12/216 (5%)

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           +SA  +          AV  +   INP  +V+   RK       T  ++Q       +  
Sbjct: 164 NSAKGYFVIFGTALNRAVDDKLFTINPNDTVKGLTRKETQREFLTLAELQSLAKTECDLP 223

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQ----HLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
             + A  F   +GLR SD  +         +  +      QKT  + T+ L +    LLA
Sbjct: 224 YLKRAALFSALTGLRYSDVAKLTWSEVYEDVNGSYIRFMQQKTEGVETLPLNETARILLA 283

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATA 304
                +   F           + S W    A ++G+ +  + H  R   AT+    G   
Sbjct: 284 E--RSEGVVFPELLYSSWQNQKLSEW----AHRSGIKRRITFHAFRHTFATLQLMEGTDL 337

Query: 305 HELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
           + +    G + +   + Y K  D  +    N   I 
Sbjct: 338 YTISKLLGHRNITTTQIYAKIVDTQKRAAVNRLSIE 373


>gi|169334405|ref|ZP_02861598.1| hypothetical protein ANASTE_00805 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259122|gb|EDS73088.1| hypothetical protein ANASTE_00805 [Anaerofustis stercorihominis DSM
           17244]
          Length = 353

 Score = 93.9 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 50/331 (15%), Positives = 105/331 (31%), Gaps = 36/331 (10%)

Query: 41  STFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD 100
            +F  A+   +T +T  +  I          ++LI        +  L    +    S  D
Sbjct: 24  PSFANAFFRGITNNTSIKTRIAYAMDLKIFFEYLIE---NHPLFTHLKDI-KDISLSDLD 79

Query: 101 QIIR-KSGDFD--YRKITTKHI--RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI 155
            +      DF       T +H    +      ++    ++ L+++R  +K+  ++E +  
Sbjct: 80  NVKAVDLEDFTEYLSYYTKEHYKNENSKVQLSNSNRGKMRKLSTLRSFYKYYFKKEMIKT 139

Query: 156 NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG---------------SQPRLAFEFLL 200
           NP + V+ PK   + I      ++         G                +       L+
Sbjct: 140 NPTVLVDLPKNYEKPIIRLEPNEVANLLDEIESGKSLTPAQLKYHNKTKVRDLAIVTLLV 199

Query: 201 YSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAM--------TPIG 251
            +G+R S+     V  +  NN   + T+K G    + +P+   + L              
Sbjct: 200 GTGIRISECVGLNVNDVDFNNDSFVVTRKGGNKTILYMPEEVREALLRYLRETRENIDTE 259

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMA 309
           +   F++   ++M  +      K          N S H +R    T         + +  
Sbjct: 260 ESALFLSLQNKRMTQSSIQKMLKKYTKIVVPLKNISPHKLRSTYGTNLYKETGDIYLVAD 319

Query: 310 TYGWKTVDQA-ETYTKGADRIRLGIKNSRRI 339
             G K V+   + Y    +  R       ++
Sbjct: 320 VLGHKDVNTTKKHYAAIEEERRKIAARVTKL 350


>gi|41057040|ref|NP_957522.1| putative integrase [Streptococcus thermophilus]
 gi|34980337|gb|AAQ84064.1| putative integrase [Streptococcus thermophilus]
          Length = 308

 Score = 93.9 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 46/277 (16%), Positives = 94/277 (33%), Gaps = 27/277 (9%)

Query: 83  HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFLTS 139
           ++   +  +  +++    Q     G    R+   + + +  +  K     P++   ++T+
Sbjct: 30  NYLDASPKTVETYKKALRQFFNYLGLHGIRQPQREDVLAFRDDLKASGLKPTTVQNYITA 89

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKR-KTEGIRPWT----KEDMQQFKSFWSEGSQPRL 194
            R+ FKW  ++     N    V+  K  K       T    KE +   K+   EG +   
Sbjct: 90  TRIFFKWTEQEGLYP-NIAEHVKGAKLDKNHKKDYLTSRQAKEVLANIKTDTEEGLRNYA 148

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQ---NNIFSIKTQKTGTI------ITVELPDGFMKLL 245
               ++  GLR  +  RA V  L+    N       K          I+  +       L
Sbjct: 149 ILSLMVTGGLRTIEVSRADVGDLRTVGENTVLFVQGKGREEKTEYIKISAPVEKAIRTYL 208

Query: 246 AM--TPIGKETFFI----NNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATI 296
                   ++  F     N+  +++     S   K     AG +    +AH +R  + T+
Sbjct: 209 KARDLTTEEQPLFTSTSNNSRGKRITTRTVSAVVKNALKNAGYDSARLTAHSLRHTAITL 268

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           +  AG    E+        ++    Y    D+ +  +
Sbjct: 269 ALLAGREITEVQQFARHANLNTTMIYNHALDQAKTAV 305


>gi|103487881|ref|YP_617442.1| phage integrase [Sphingopyxis alaskensis RB2256]
 gi|98977958|gb|ABF54109.1| phage integrase [Sphingopyxis alaskensis RB2256]
          Length = 242

 Score = 93.9 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 36/230 (15%), Positives = 81/230 (35%), Gaps = 17/230 (7%)

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS- 187
            P  A + L +++ +   A  +  + ++P L  ++   K +  R  +  +++      + 
Sbjct: 5   GPGVAGRCLGTLQAIIGHAKHKGLLEVHPTLGAKKLASKKKTRR-LSVAEIEMMGKAIAH 63

Query: 188 -----EGSQPRLAFEFLLYSGLRCSD--SCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
                E          LL +G R  +  + R    H      +    K G  I   +   
Sbjct: 64  AEASGENPVALGVLRTLLLTGYRREEGQAMRRSWLHPDAGYVAFPDTKGGAQIR-AIGPA 122

Query: 241 FMKLLA--MTPIGKETFFINNDK-QKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATI 296
            +++L       G    F +        A   S   +     AG+   + H +R    ++
Sbjct: 123 AVRVLQDQAEIAGNPHLFPSTIGDGPFTA--VSECLRRVCVLAGIEGVTPHTLRHTFGSV 180

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI-KNSRRISSVVDS 345
           + D G +   + A  G  + +  + Y    + ++L + + S  I  ++ S
Sbjct: 181 AGDLGFSELTIRAMLGHASQNVTQDYVHIDEALKLAVRRTSDEIERLLAS 230


>gi|317131475|ref|YP_004090789.1| integrase family protein [Ethanoligenens harbinense YUAN-3]
 gi|315469454|gb|ADU26058.1| integrase family protein [Ethanoligenens harbinense YUAN-3]
          Length = 330

 Score = 93.9 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 34/262 (12%), Positives = 83/262 (31%), Gaps = 14/262 (5%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES----RKHT 129
           L+  +  +      +  S   +++    +I        R+I T  +R  + +    R  +
Sbjct: 55  LLEIFISAKRVEGCSEKSLKYYDATIRHMIVDIA-KPVREIDTGDLRIYLANYQKLRNSS 113

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
             +           F W   ++Y+  +P   + + K +      ++ E +++ +    E 
Sbjct: 114 KVTIDNMRRIFSSFFGWLEDEDYILKSPVRRIHKIKTEKTIKDTFSDEGLEKLRDACDE- 172

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDG----FMKL 244
            +     + L  +G+R  +  +   + +  +    +   K G    V             
Sbjct: 173 LRDLAMVDLLASTGMRVGELVQLNREDMNFHERECLVLGKGGKERMVYFDARTKIHLRNY 232

Query: 245 LAMTPIGKETFF--INNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG 301
           L          F  + +  +++         +     A + K   H  R+  AT + D G
Sbjct: 233 LDSRSDDNPALFVSLTSPHERLLIGGVETRIREIGKNAALQKVHPHKFRRTLATRAIDKG 292

Query: 302 ATAHELMATYGWKTVDQAETYT 323
               ++    G   +D    Y 
Sbjct: 293 MPIEQVQRLLGHVKIDTTMHYA 314


>gi|261343362|ref|ZP_05971007.1| site-specific recombinase, phage integrase family [Providencia
           rustigianii DSM 4541]
 gi|282568500|gb|EFB74035.1| site-specific recombinase, phage integrase family [Providencia
           rustigianii DSM 4541]
          Length = 377

 Score = 93.9 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 54/356 (15%), Positives = 114/356 (32%), Gaps = 46/356 (12%)

Query: 9   PFVTKERT-RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSA--LTGSTPKREYIN--- 62
           P + ++   R+GK+ + ++     R                 A  +      ++ ++   
Sbjct: 13  PNLYRKLDKRNGKVYWQYKHPLTGRFHSLGTDAEEAEQVAAQANVVIAEQQTKQILSIND 72

Query: 63  -----SPRKKPTTLKWLISEYRKS----AHWGSLAVNSRISFESYFDQIIRKSGDFDYRK 113
                  +K   ++   I +Y +        G L +NS        +   +  G    + 
Sbjct: 73  RLSNIKNKKIGISVSNWIDKYLEIQQERMDQGELKLNSYKQKIKPLNLFKQHCGMMSLKD 132

Query: 114 ITTKHIRSGVESRKHTPSS--AIQFLTSMRVLFKWAVRQEYVAI--NPCLSVERPKRKTE 169
           IT   +    +  K    +  A    + +  +FK A    +V    NP L+ ++P+ K +
Sbjct: 133 ITALEVVKITDEVKALGHNRMAQVVRSVIVDVFKEAQHVGHVPPGYNPALATKKPRSKVK 192

Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLA-FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
             R  + ++ +      +             L +G R  D  +     + + +  I+ +K
Sbjct: 193 RER-LSLDEWKAIYQQAAMHPHYLQHGMLLALITGQRLGDITKMKFSDVWDGMLHIEQEK 251

Query: 229 TGTIITVELP-------------DGFMKLLAMTP---IGKETFFINNDKQKMNATQFSIW 272
           TGT I + L                  + L ++P     + +         ++ T  +  
Sbjct: 252 TGTKIAIPLTLKCDAIEMTLGDVISMCRDLVVSPYLLHHRHSIARGKKGGAISNTSLTAA 311

Query: 273 FKAKATKAGVNKS------AHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           FK    K G+  S       H  R  S  I  + G          G ++    + Y
Sbjct: 312 FKNARNKCGITWSKGAEPTFHEQRSLSERIYREQGLDT---QRLLGHRSKVMTDNY 364


>gi|331269495|ref|YP_004395987.1| integrase/recombinase [Clostridium botulinum BKT015925]
 gi|329126045|gb|AEB75990.1| integrase/recombinase, putative [Clostridium botulinum BKT015925]
          Length = 274

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 45/262 (17%), Positives = 87/262 (33%), Gaps = 25/262 (9%)

Query: 88  AVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSG----VESRKHTPSSAIQFLTSMR 141
           +  +  S+     Q     K+      KI    I       +  ++    +  + L S+ 
Sbjct: 18  SEKTIDSYIRDISQFNDYLKTNKKKLVKIKLSDIDEFKNFLIYDKELKIKTINRKLVSIN 77

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGI--RPWTKEDMQQFKS--FWSEGSQPRLAFE 197
              K+         N  + +++ K + +       + +D++      +  +  + R    
Sbjct: 78  QYLKF--------NNISVDIKQEKVQMQNFLDDMLSNQDIEDIIKATYAKDDVRARTIIY 129

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL---LAMTPIGKET 254
            L Y+G+R S+  +  +   + +  SI   K      V +P+    +        I K T
Sbjct: 130 TLYYTGMRVSEMLQLTIYDTKKSSISII-GKGSKHREVFVPNKLKTIWDNYMQVRIKKST 188

Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGATAHELMATY 311
                 +  +N        K  A  AGV+KS   AH  R       AD G     +    
Sbjct: 189 ALFTGKRGPINRKTVDSIIKTYAETAGVDKSKAHAHNFRHLYCKNLADRGIDISTIADIA 248

Query: 312 GWKTVDQAETYTKGADRIRLGI 333
           G + ++    YT+      L I
Sbjct: 249 GHQNINTTRIYTRKTKEELLNI 270


>gi|269977407|ref|ZP_06184379.1| tyrosine recombinase XerC [Mobiluncus mulieris 28-1]
 gi|269934323|gb|EEZ90885.1| tyrosine recombinase XerC [Mobiluncus mulieris 28-1]
          Length = 225

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 71/223 (31%), Gaps = 14/223 (6%)

Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
              +  +    T  SA    +S R  F WA R   +  +P   +   KR     RP ++ 
Sbjct: 8   DFSACHDWMPETRHSA---FSSFRQFFAWAYRTGRLETDPAAGLPAIKRFVPPPRPISEL 64

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT---QKTGTIIT 234
           D +       E +  RL        GLR S+ C    + +Q ++         K G    
Sbjct: 65  DFEAALDQADERT--RLILLLAGKMGLRRSEICLVHARDIQQDLLGYSLVVHGKGGKTRV 122

Query: 235 VELPDGFMKLLAMTPIGKETFF--INNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKF 292
           V +PD  +  L          F  +   +  + +   +   K            H +R  
Sbjct: 123 VPIPDSLVFPLRRAGEIGGWVFPSLTAREGHLTSGTVAKLAKRVLPT---GVCLHQLRHR 179

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGAD-RIRLGIK 334
            ATI          +    G   V   + Y    D R+RL + 
Sbjct: 180 FATIVYLRTKDLRAVQMLLGHDKVSTTQRYVAMDDQRLRLAVN 222


>gi|229825965|ref|ZP_04452034.1| hypothetical protein GCWU000182_01329 [Abiotrophia defectiva ATCC
           49176]
 gi|229789707|gb|EEP25821.1| hypothetical protein GCWU000182_01329 [Abiotrophia defectiva ATCC
           49176]
          Length = 366

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 53/306 (17%), Positives = 98/306 (32%), Gaps = 45/306 (14%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHT 129
               +  Y K      L   +  +     D  +I   G+    +I    I +  ++ K  
Sbjct: 61  FASFVEIYLKDKE-VELKQRTLRNKRYMIDTHVIPYFGEKKMNEIMPADIIAWQKTIKEN 119

Query: 130 PSSAIQFLTSMR----VLFKWAVRQEYVAINPCLSVER-PKRKTEGIRPWTKEDMQQFKS 184
              +  +L  ++     +F  AV+   + +NPC SV++  +     I  WT ++ Q F  
Sbjct: 120 NEFSEAYLRMLQNQVTAIFIHAVKIYSLRVNPCKSVKKMGRSDDRSITFWTFDEYQHFIR 179

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT--------------- 229
            +   S   L FE L ++G+R  +     +  +     SI   KT               
Sbjct: 180 TYDTTSMHYLMFEILFWTGMREGELLALTMNDIDFTQMSIHISKTYYRMNRQDIITEPKT 239

Query: 230 -GTIITVELPDGFMKLLAM-------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281
             ++ TV +P   M  +          P     F        + A       K    KA 
Sbjct: 240 DNSVRTVAVPKFLMDDIKCYYERLYKYPRDARLF-------PIVAEALQHSMKRHTAKAD 292

Query: 282 VN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRI 339
           V     H +R          G     +    G K +     TY        L     +++
Sbjct: 293 VKPIRVHDLRHSHCAYLIHQGIQPLLIKERLGHKDIRITLNTYGH------LYPSEQKKV 346

Query: 340 SSVVDS 345
           + ++++
Sbjct: 347 ADMLNN 352


>gi|254453490|ref|ZP_05066927.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 238]
 gi|198267896|gb|EDY92166.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 238]
          Length = 368

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 44/321 (13%), Positives = 106/321 (33%), Gaps = 18/321 (5%)

Query: 9   PFVTKERTRHGKIIYYFRK---GHGRRIRL-PYPHESTFIPAYMSALTGSTPKREYINSP 64
             +     +  K  +YF+K   G  +RI +  +P  S       +        R    + 
Sbjct: 38  KGLVLFVGKRSKT-WYFQKDVGGQTKRILIGRFPIISAQAARQTALGFALEMGRGAGKAA 96

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
           +     L+  +  Y         +  +++   +     ++        +I+         
Sbjct: 97  QIGAPILEAAMEVYLARPKLR--SETNKVGMRAQLTLHLKDWMRLPLDEISKAMSVRRHH 154

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
               +PS+A   L S R ++  A R   +   P +++E  + K +G      +  ++   
Sbjct: 155 DMAGSPSAANHVLRSFRAIYNHARRTGDLPECPTMAIEWFEDKPDGRIIENLKHWRKTID 214

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
                   R+ +E LL++GLR ++      + +  +   +   K G    + +     ++
Sbjct: 215 DLPNPIH-RVFYELLLFTGLRKTEVFTLKWEQVLEDRIHLPMTKNGRSFDLPISQLHHEI 273

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATA 304
           LA        + I         ++     +       +  + H  R+  AT++ +AG   
Sbjct: 274 LAPLRPLSSDWVI-----PSPKSETGHITRPVR----LKYNPHMHRRTFATVAMEAGVLE 324

Query: 305 HELMATYGWKTVDQA-ETYTK 324
             +        +    + Y +
Sbjct: 325 EIVGRLLNHTPLSITGQRYVR 345


>gi|126661524|ref|ZP_01732572.1| Phage integrase [Cyanothece sp. CCY0110]
 gi|126617190|gb|EAZ88011.1| Phage integrase [Cyanothece sp. CCY0110]
          Length = 320

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 48/289 (16%), Positives = 100/289 (34%), Gaps = 31/289 (10%)

Query: 80  KSAHWGSLAVNSRISFESYFDQIIR--KSGD-----FDYRKITTKHIRSGVES--RKHTP 130
            S +   L+  SR +     + I     +GD      D+ K+   H  +   +  +K  P
Sbjct: 28  ASVYLSGLSEGSRRTIRYSLNTIASLLTNGDCDADTLDWSKLRYHHTAAVRVALLQKLAP 87

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVA-INPCLSVERPKRKTEGI---RPWTKEDMQQFKSFW 186
            +A + L+++R +   A R   +A  +   +V+ P  +       R     +++      
Sbjct: 88  VTANKMLSALRRVLLEAYRLGLMAADDYQKAVDFPNIQGSPELRGRSLDSTEIRALLGTC 147

Query: 187 SEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDG 240
            E S    +       L  +G+R S+  +  ++  +       ++  K G    V LP+ 
Sbjct: 148 GEDSVMDVRDAAIMVMLRGTGIRRSELVKLELRDFESSTGEVLVRKGKRGKSRRVYLPEE 207

Query: 241 F----MKLLAMTPIGKETFFINNDKQK------MNATQFSIWFKAKATKAGVNK-SAHGV 289
                 + L +        F    +        M++       + +A  AG+   S H  
Sbjct: 208 AISYIQRWLGVRGEESGCLFCRIHRGGHLKLGQMHSDTVWRIIQKRAKMAGIESFSPHDF 267

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETY-TKGADRIRLGIKNSR 337
           R+   +   DAG     +    G  +      Y  +G +  R  ++  +
Sbjct: 268 RRTFCSDLLDAGVDIVTVQKLAGHSSPVTTAKYDRRGEETKRRAVQCLK 316


>gi|110805783|ref|YP_689303.1| putative phage integrase protein [Shigella flexneri 5 str. 8401]
 gi|110615331|gb|ABF03998.1| putative phage integrase protein [Shigella flexneri 5 str. 8401]
          Length = 358

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 43/276 (15%), Positives = 88/276 (31%), Gaps = 26/276 (9%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--K 127
           T+   I  Y+        + N+  +  +  + I  K G     +ITT+HI   ++     
Sbjct: 75  TMAGWIERYKTILIRRKASRNTYKTRVNQLETIKEKLGGVLLTEITTRHIAEFLDLWIEG 134

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK--RKTEGIRPWTKEDMQQFKSF 185
              + A    + +  +F+ A+ +  ++ NP      PK     E ++  T   +++    
Sbjct: 135 GKNTMAGSMRSVLSDMFREAIVEGRISQNPVTPTRAPKIVVTRERLKLKTYNCIREAADQ 194

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
                   LA +  L +G R  D        + ++   I+  KTG +I + L        
Sbjct: 195 LPAWFP--LAMDLALVTGQRREDITNMRFSDIYDDRLHIRQIKTGMMIAIPLSLSLPVAG 252

Query: 246 AMTP--------IGKETFFINNDKQKMN------ATQFSIWFKAKATKAGV-----NKSA 286
                       + +  + I+   +K +          +  F A     G+       + 
Sbjct: 253 LRLGAVVEQCRMVSRGDYLISAGIRKNSPDGSIHPDGLTKKFVAARKLTGILFSENPPTF 312

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           H +R   A                 G  +    + Y
Sbjct: 313 HEIR-SLAGRLYKEICGEEFAQRLLGHTSEKTTKMY 347


>gi|30019100|ref|NP_830731.1| DNA integration/recombination/invertion protein [Bacillus cereus
           ATCC 14579]
 gi|29894643|gb|AAP07932.1| DNA integration/recombination/invertion protein [Bacillus cereus
           ATCC 14579]
          Length = 282

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 38/258 (14%), Positives = 81/258 (31%), Gaps = 35/258 (13%)

Query: 101 QIIRKSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINP 157
           +II   G+    K+T+ H+++ V S +       +  + +  +R   + A+  E +  N 
Sbjct: 9   RIIPSLGNIKLAKLTSLHMQNYVNSLRDEGLKRGTIEKIIKLIRNSLENAIDLELITKNV 68

Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217
              ++  K   E +  W ++++Q F     + S+  + F   L +G+R  +      + +
Sbjct: 69  AAKIKLSKADKEELTVWNEQEVQLFLKAAQD-SRYYIVFHMALVTGMRQGELLGLRWKDV 127

Query: 218 QNNIFSIK--------------TQKTGTIITVELPDG-------------FMKLLAMTP- 249
                 +                 KT + +   L                  + L+    
Sbjct: 128 DLEKGHLTISQTLSHDGKTFLVGGKTKSSLRKILLPASTVAKLKKHGVVVLKEKLSQGEE 187

Query: 250 -IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHEL 307
               +          +N         A    A V K   H +    AT+    G     +
Sbjct: 188 YHDNDLVMCTPSGTSINPANVRRSLNALIQNAAVPKIRFHDLHHTHATLLMAKGVDVKVI 247

Query: 308 MATYGWKTVDQA-ETYTK 324
               G   +    +TY+ 
Sbjct: 248 SERLGHSNIKITLDTYSH 265


>gi|163846861|ref|YP_001634905.1| integrase domain-containing protein [Chloroflexus aurantiacus
           J-10-fl]
 gi|222524682|ref|YP_002569153.1| integrase domain-containing protein SAM domain-containing protein
           [Chloroflexus sp. Y-400-fl]
 gi|163668150|gb|ABY34516.1| integrase domain protein SAM domain protein [Chloroflexus
           aurantiacus J-10-fl]
 gi|222448561|gb|ACM52827.1| integrase domain protein SAM domain protein [Chloroflexus sp.
           Y-400-fl]
          Length = 317

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 48/288 (16%), Positives = 96/288 (33%), Gaps = 30/288 (10%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFK 145
            L+ N+  S+              +   ITT  I+  +  R+  P +  + + S+   F+
Sbjct: 31  GLSDNTITSYRCDLRTAGLAL-SQELSAITTADIQQFLARRQEQPGTTNRRIASLGRFFR 89

Query: 146 WAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQQFKSFWSEGSQP-RLAFEFLLYSG 203
           WA+ + YV  NP   ++ R   +        + +++      +   QP RL F  L   G
Sbjct: 90  WALERGYVTHNPVEQIDGRLPTEHRPQPITNEAELRALDQAIAAAPQPYRLIFTMLREIG 149

Query: 204 LRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVEL-PDGFMKLLAMT---------P 249
           +R  +     V  +       +  ++  K+G+   + L PD   + L             
Sbjct: 150 IRTDEVLNLNVGDVILEPGREMLLVQDSKSGSKRMIVLTPDAMPRSLRGLRVWVRDMEDA 209

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGV----------NKSAHGVRKFSATISAD 299
             +   F ++   +++       + A    A +            + H +R  +A     
Sbjct: 210 APETPLFRSSRGTRVSYDTLHRRWVAVCKAARLIDIVDGREQPRYTLHHLRHTAAAEL-I 268

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
           A      +    G +       Y++   R R      R +S  V S  
Sbjct: 269 AFYPEQVVRRILGHRDPRSTRRYSELV-RSR-AHTAERPVSLQVPSRR 314


>gi|121583523|ref|YP_973949.1| phage integrase family protein [Polaromonas naphthalenivorans CJ2]
 gi|120596773|gb|ABM40207.1| phage integrase family protein [Polaromonas naphthalenivorans CJ2]
          Length = 331

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 46/280 (16%), Positives = 97/280 (34%), Gaps = 35/280 (12%)

Query: 84  WGSL-AVNSRISFESYFDQIIRKSG---DFDYRKITTKHI---RSGVESRKHTPSSAIQF 136
           + +L +  +R +++      +  +G     ++R +T  HI   R+ +E +    +S  + 
Sbjct: 41  FANLDSAQTRRAYQGDLRAFMAFTGIVQPEEFRAVTRAHILAWRAELEKQNLAGASIRRK 100

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKT--EGIRPWTKEDMQQFKSFWS----EGS 190
           L ++  L+ +      V  NP   V+RPK +T             +           +G 
Sbjct: 101 LAALASLYDYLCESNAVTHNPVRGVKRPKAETSEGKTPALGDAQARALLGAPPSDTLKGK 160

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHL---QNNIFSIK-TQKTGTIITVELPD----GFM 242
           + R     LLY  LR  +  +  V+     +  +  ++   K G +  +           
Sbjct: 161 RDRAILSVLLYHALRREELTKLLVKDFAQERRGVPHLRVQGKGGKLRYLPAHPHSLRLVA 220

Query: 243 KLLAMTPIGKET--------------FFINNDKQKMNATQFSIWFKAKATKAGVNKSAHG 288
           + LA +  G+E                  +            + + A+   AG N   H 
Sbjct: 221 EYLAASGHGQEADSPLFRRTRAPRAGALASALTPGSVYADVVVRYMAQVGIAGENMGPHA 280

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           +R  +AT + +  A   ++    G  ++     Y +   R
Sbjct: 281 LRATAATNALEHQADIAKVQEWLGHASISTTRVYDRRGSR 320


>gi|320652975|gb|EFX21175.1| putative integrase [Escherichia coli O55:H7 str. 3256-97 TW 07815]
          Length = 309

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 49/301 (16%), Positives = 98/301 (32%), Gaps = 12/301 (3%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRK-SAHWGS 86
             G+RIR  +  +S  +      L          NS  ++P ++  LI  + K       
Sbjct: 6   RKGKRIRKKFKTKSDAVLYERWVLAQQHNNEWKGNSIDRRPLSV--LIDLWWKYHGQLMK 63

Query: 87  LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKW 146
              N+R+      + +           + T+ +R     +   PS+  + + ++  +F  
Sbjct: 64  SGHNTRLKLLRLSEAMDDPCVHKLNTTMLTE-LRVSRIEQGIQPSTINREIGALSAMFTA 122

Query: 147 AVRQEY-VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLR 205
            +   + +  NP   ++  K     +   +K +  Q     +E    RLA E LL +G R
Sbjct: 123 LISSGHFLNDNPVQGLKGMKVNEREMGYLSKSECVQLLDALAENPDERLAVEILLSTGAR 182

Query: 206 CSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN 265
             +      + + +   +    K     TV + +   +   +   G +  F   D   + 
Sbjct: 183 WGEVAVLEQRRVLHCRITFSKTKNSKNRTVPISESLFE--KIKKRGGKLVFPTLD-YPLV 239

Query: 266 ATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
                   K  A      ++ H +R   A+     G     L    G   +     Y   
Sbjct: 240 RD----VIKTVAPDVPDGQAVHALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIYAHL 295

Query: 326 A 326
           A
Sbjct: 296 A 296


>gi|268610896|ref|ZP_06144623.1| integrase family protein [Ruminococcus flavefaciens FD-1]
          Length = 399

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 53/321 (16%), Positives = 107/321 (33%), Gaps = 56/321 (17%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRSGVESRKHT 129
               + ++ +     ++  ++R+++  Y   I   K  D   + +T   ++  +   K+ 
Sbjct: 70  FGEYLDQWLEKFGSVAIRNSTRMNYLGYLRHIQRHKIKDIKLKNLTVDDLQEFILFLKNA 129

Query: 130 -------PSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
                  P SA      +  +      AV ++ +  N    V+ PK  T  +R  T+ ++
Sbjct: 130 GQLDTGLPLSAKTLHNIMNMIHKALDHAVGRQLIYHNAADYVQLPKVMTPEMRVLTETEI 189

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQK--------- 228
             F +   EG + ++A   +L+ GLR  + C      ++  + I+ +   K         
Sbjct: 190 SGFVAAM-EGDRLQIALVLMLFCGLRLGECCALTHDDVRCKDGIYYLNISKSLNRVSNFE 248

Query: 229 ------------------TGTIITVELPDGFMKLLAMTPIGKET-------------FFI 257
                              G      LP+   K+LA     KE                 
Sbjct: 249 AKAGEPKTILRLQETKTSKGKRQVPLLPEVADKVLAHIQWQKEQAEKSYGMYEENPWLIA 308

Query: 258 NNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTV 316
           N     ++        KA A   G+ +   H +R   A+ +  AG     L    G ++ 
Sbjct: 309 NELGHYLDPGTVRKKLKAVAESIGITDFHPHCLRHTYASQAVKAGVPLPYLSDILGHEST 368

Query: 317 D-QAETYTKGADRIRLGIKNS 336
              A+ Y     + R   + +
Sbjct: 369 AFTAKVYVSLDLQGRANAQAA 389


>gi|54026110|ref|YP_120352.1| site-specific tyrosine recombinase XerC [Nocardia farcinica IFM
           10152]
 gi|54017618|dbj|BAD58988.1| putative recombinase [Nocardia farcinica IFM 10152]
          Length = 307

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 37/286 (12%), Positives = 86/286 (30%), Gaps = 29/286 (10%)

Query: 68  PTTLKWLISEYRKSAHW-GSLAVNSRISF----ESYFDQIIRKSGDFDYRKITTKHIRSG 122
           P  L  L++EY +      + + ++  ++     +    +  +S D    ++    +RS 
Sbjct: 5   PEDLTALLAEYGRHLRLGQNRSAHTVRAYVGDARALLTHLYTRSPDAAIGELDLPLLRSW 64

Query: 123 VESRKHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW----- 174
           +          ++  +  +++R    W      +  +P L +  PK              
Sbjct: 65  LADLAAAGAARTTLARRASAVRTFTAWLTGTGRLPADPGLRLAAPKAHRTLPAVLARQQA 124

Query: 175 ---TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
                      +       + RL  E L  +G+R S+ C   +  +      ++    G 
Sbjct: 125 VAAMDAAESGARQEDPMALRDRLIVEMLYATGIRVSELCGLDIDDVDRERRLVRVLGKGN 184

Query: 232 ---------IITVELPDGFMKLLAMTPI--GKETFFINNDKQKMNATQFSIWFKAK--AT 278
                       + +     +               I    ++++  Q          A 
Sbjct: 185 KERSVPFGGPADLAVEQWLRRGRPAFATVESGRALLIGRRGRRLDQRQARTVVHEVVSAI 244

Query: 279 KAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
               +   HG+R  +AT   + GA    +    G  ++   + YT 
Sbjct: 245 PGAPDLGPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTH 290


>gi|254881857|ref|ZP_05254567.1| integrase [Bacteroides sp. 4_3_47FAA]
 gi|254834650|gb|EET14959.1| integrase [Bacteroides sp. 4_3_47FAA]
          Length = 372

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 52/265 (19%), Positives = 96/265 (36%), Gaps = 26/265 (9%)

Query: 84  WGSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRSGVE-----------SRKHTPS 131
           +  LA    I ++  +    R  +G   + ++     R  +E           ++K   +
Sbjct: 100 FKELADRKNIKWQHVYKHFERFVNGKCTFEEVDVDLCRKFMEYLLNAPQSIHTNQKLHIN 159

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           SA  + ++ R +   A R + +  NP   ++R +         ++E++ +      E   
Sbjct: 160 SAAGYWSAFRAVLHTAYRDKKIKENPNGFLDRIECIPTMREHLSQEELIRLAETPCEEDV 219

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQ---NNIFSIKT--QKTGTIITVELPDGFMKLLA 246
            + AF F   +GLR SD  +   Q +Q   N    + T  QKT  I+   + D    LL 
Sbjct: 220 LKRAFLFACLTGLRKSDIRQLTWQQIQPYTNGKMFVTTRMQKTKQIVHNPISDEAYGLLG 279

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATA 304
               G    F     +           K     AG+ K  + H  R    ++  + G   
Sbjct: 280 ERHEG--LIF-----EGFKDKMLQGPLKRWLLAAGITKKITFHCTRHSFGSLHVEMGTDM 332

Query: 305 HELMATYGWKTVDQAETYTKGADRI 329
             + A  G K +   + Y+K A + 
Sbjct: 333 AVIQAYMGHKNITTTQIYSKMAAQQ 357


>gi|84516978|ref|ZP_01004335.1| possible phage-related integrase [Loktanella vestfoldensis SKA53]
 gi|84509096|gb|EAQ05556.1| possible phage-related integrase [Loktanella vestfoldensis SKA53]
          Length = 386

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 52/340 (15%), Positives = 114/340 (33%), Gaps = 23/340 (6%)

Query: 27  KGHGRRIRLPYPHEST--FIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHW 84
           + +GRR R+            A  +A    +  +E     +  P T +  + E+   A  
Sbjct: 51  RENGRRKRITLGGYPAISLSKAREAARLALSEIQEGTFGRKNAPATFETAVEEWY--ARE 108

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP--SSAIQFLTSMRV 142
                + R   ++    ++   G     +I    +   ++        + A +    +  
Sbjct: 109 QRAKKSFRQVEQAMRLHVLPFLGRHQLDQIKKADLMRVIDRVAERGKLTQANRVRAFITR 168

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF-KSFWSEGSQPRLAFEFLLY 201
            F +A+ ++ +  +P  ++ RP  +    R  +++++    ++    G       + L+ 
Sbjct: 169 FFNFAIERDLLMSSPAAALPRPAVEISRDRVLSRDELCAVWETAEQMGFPFGRITQLLIL 228

Query: 202 SGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI 257
           +  R  +        L  +    I S +  K G    V L    + LL+  P       I
Sbjct: 229 TAQRRDEVAGMRWSELDLDRARWIISKERAKNGKAHIVHLSPQALALLSTIPRQNGVDLI 288

Query: 258 NNDKQKMNATQFSIWFKAKATKA---GVNKSAHGVRKFSATISADA-GATAHELMATYGW 313
                +   + FS      A  A     +   H +R+ +AT  A+    T   +      
Sbjct: 289 FTTTGRSAVSGFSKA--KAALDARSHVSDWRFHDLRRSAATFMAEELRITPVVVDRILNH 346

Query: 314 KTVD---QAETYTKG---ADRIRLGIKNSRRISSVVDSDD 347
            +         Y +G   ADR        + + ++V+S+ 
Sbjct: 347 VSGTVRGVTAVYLRGEHLADREAALAAWGQLVENLVNSNK 386


>gi|301059574|ref|ZP_07200486.1| site-specific recombinase, phage integrase family [delta
           proteobacterium NaphS2]
 gi|300446339|gb|EFK10192.1| site-specific recombinase, phage integrase family [delta
           proteobacterium NaphS2]
          Length = 441

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 52/313 (16%), Positives = 98/313 (31%), Gaps = 41/313 (13%)

Query: 49  SALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG-SLAVNSRISFESYF----DQII 103
            A+     K+E      K   ++     EY K  ++  +     + S+E       + + 
Sbjct: 100 RAIAEILKKKEEQAKAAKANESIS--FGEYFKETYYPIAQTSKKKRSYEQELSHFNNWLN 157

Query: 104 RKSGDFDYRKITTKHIRSG--------------------VESRKHTPSSAIQFLTSMRVL 143
              G+   + I   H+                       V+ +  +P        + R  
Sbjct: 158 PVIGNMRLKDIRPMHLERVKQNLLSAQAMSRNREPKKGPVKKQARSPRMIQYVFATGRQC 217

Query: 144 FKWAVRQEYVAIN-PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP-RLAFEFLLY 201
           + +A R   V+   P   V+ PK + + +R  T E+  Q  +   E SQ         L 
Sbjct: 218 WNYARRDGLVSNEWPGKDVKLPKVENQRMRFLTDEEGDQLLAGLKERSQQLHDICLLSLD 277

Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKETFFINND 260
           SGLR  +        +  +   +K     G    V L D  + +L   P      F +  
Sbjct: 278 SGLRAYEIFSLSWNRVDLDQKLVKVFDSKGKDRVVYLTDRTVNMLRGLPRDNGLVFKSRT 337

Query: 261 KQKMNATQFSIWFKAKATKAGVN---------KSAHGVRKFSATISADAGATAHELMATY 311
            +++   + S  F  +    G N            H +R   A+     G   + +    
Sbjct: 338 GEQI--KEISNSFHREVDSLGWNDGVKSHKDRLVFHSLRHSYASRLVARGVDLYVVGQLM 395

Query: 312 GWKTVDQAETYTK 324
           G   +   + Y+ 
Sbjct: 396 GHSDLTMTKRYSH 408


>gi|282877198|ref|ZP_06286036.1| site-specific recombinase, phage integrase family [Prevotella
           buccalis ATCC 35310]
 gi|281300690|gb|EFA93021.1| site-specific recombinase, phage integrase family [Prevotella
           buccalis ATCC 35310]
          Length = 410

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 40/268 (14%), Positives = 94/268 (35%), Gaps = 30/268 (11%)

Query: 85  GSLAVNSRISFE---SYFDQIIR---KSGDFDYRKITTKHIRSGVESRKH----TPSSAI 134
              A+ +   +E    Y  ++I+      D    +I  + +R+     K       ++ I
Sbjct: 130 KDYALITVRRYESCKRYLAELIKLKYDKEDLPLSEINGELVRAFEFYLKTEKECQQNTVI 189

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WSEGSQ 191
           +++  ++ +   A+  E++  +P + ++  +++       T +++    +        + 
Sbjct: 190 RYMKCLKKITNLALANEWITKDPFIGIKFHEKEVI-REFLTMDELLTIYNKEFSLDRITV 248

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHL-----QNNIFSIKTQKTGTIITVELPDG----FM 242
            R  F F  ++GL   D  +   +H+      N       QKT  +  + L D       
Sbjct: 249 VRDVFTFAAFTGLAFIDVQQLSAEHIVQDNNGNYWIRKPRQKTKNMCNIPLLDIPMQILE 308

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS-AD 299
           K  +     K+   +          + + + K  A   G++K  + H  R   AT     
Sbjct: 309 KYKSHPTCQKKNVLL----PVPCNQKMNSYLKEIADLCGISKCLTTHTARHSYATSVCLA 364

Query: 300 AGATAHELMATYGWKTVDQAETYTKGAD 327
            G +   +    G   +   + Y +  D
Sbjct: 365 NGVSIENVAKMLGHSNIKMTQHYARVLD 392


>gi|153814903|ref|ZP_01967571.1| hypothetical protein RUMTOR_01118 [Ruminococcus torques ATCC 27756]
 gi|317500415|ref|ZP_07958639.1| phage integrase family Integrase/recombinase [Lachnospiraceae
           bacterium 8_1_57FAA]
 gi|331089578|ref|ZP_08338477.1| hypothetical protein HMPREF1025_02060 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145847934|gb|EDK24852.1| hypothetical protein RUMTOR_01118 [Ruminococcus torques ATCC 27756]
 gi|316898170|gb|EFV20217.1| phage integrase family Integrase/recombinase [Lachnospiraceae
           bacterium 8_1_57FAA]
 gi|330404946|gb|EGG84484.1| hypothetical protein HMPREF1025_02060 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 366

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 44/281 (15%), Positives = 92/281 (32%), Gaps = 44/281 (15%)

Query: 100 DQIIRKSGDFDYRKITTKHIRSGVESRK----------HTPSSAIQFLTSMRVLFKWAVR 149
           +  I +    D   +    I    E  K          +T     + ++++R  + +  +
Sbjct: 83  NYTIDQFTLADIENLEPVDIEEYQEYLKVYKNDEKQVTNTEKGLARKMSALRSFYGYYFK 142

Query: 150 QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG--------------SQPR-- 193
           ++ ++ NP L V+ PK   + I     +++ +   +   G              ++ R  
Sbjct: 143 RQAISKNPTLLVDMPKLHEKAIIRLDADEVVRLLDYVDHGGDHLTGQKKAYFEKTRNRDL 202

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLA----- 246
                LL +G+R S+     +  +   NN   +  +K G  + V   +     L      
Sbjct: 203 AILTLLLGTGIRVSECVGLDINDVDFENNGIKVM-RKGGNEMIVYFGEEVENALKTYMYT 261

Query: 247 ------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISA 298
                   P  +   F++  +++M         K  A +   NK  + H +R    T   
Sbjct: 262 TRRTTLPLPGHENALFLSTQRKRMGVQAIENMVKKYAREVTPNKKITPHKLRSTYGTSLY 321

Query: 299 DAGATAHELMATYGWKTVDQA-ETYTK-GADRIRLGIKNSR 337
                 + +    G K V+   + Y     DR R      +
Sbjct: 322 KETGDIYLVADVLGHKDVNTTKKHYAAIDEDRRRQAANIVK 362


>gi|325662711|ref|ZP_08151308.1| hypothetical protein HMPREF0490_02048 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325471050|gb|EGC74277.1| hypothetical protein HMPREF0490_02048 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 351

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 53/340 (15%), Positives = 112/340 (32%), Gaps = 54/340 (15%)

Query: 16  TRHGKII----YY-----FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
           TR GK+     YY      R+   +R          +   ++                + 
Sbjct: 4   TRDGKLWRSQFYYKDWQGIRRKKNKRGFKTKGEADEWERNFLQ------------QQQKN 51

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE- 124
              + +  +  Y        L  ++ I+    FD ++          +I T  IR+    
Sbjct: 52  LDISFENFVEIYFADME-NRLRESTIINKRYVFDLKVTPYFKHKKMCEIQTSDIRAWQNE 110

Query: 125 --SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP-KRKTEGIRPWTKEDMQQ 181
              + + P+        +  LF +AVR   +  NPC       K K + +  WTK++ ++
Sbjct: 111 LIKKGYAPTYLKSINNQLAALFNYAVRYYDLRDNPCRKAGSIGKSKADEMDFWTKQEFKE 170

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---------------NNIFSIKT 226
           F        + R+AF  L ++G+R  +      + +                N    I  
Sbjct: 171 FLPSMDSKPEARMAFLLLYWTGMRIGELLALTYEDIDLEKRCITINKSYQRLNGKDMITP 230

Query: 227 QKT-GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS 285
            KT  +   + +P   ++ L         + I  +++     +F+  F       G+ ++
Sbjct: 231 PKTPKSNRKISIPPFLVEELKE--YCSMLYGITENERMF---RFTKSFMEHEMVRGIKET 285

Query: 286 ------AHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
                  H +R   A++  + G     +    G + ++  
Sbjct: 286 GVRRIRLHDLRHSHASLLVEMGFQPLAIAERLGHEKIETT 325


>gi|319760989|ref|YP_004124926.1| integrase family protein [Alicycliphilus denitrificans BC]
 gi|317115550|gb|ADU98038.1| integrase family protein [Alicycliphilus denitrificans BC]
          Length = 454

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 67/345 (19%), Positives = 123/345 (35%), Gaps = 28/345 (8%)

Query: 9   PFVTKERTRHGKII----YYFRKGHGRRIRLPYPHESTFIPAYMSA--LTGSTPKREYIN 62
           P    + T HG+ +    Y    G  R+ ++    E T   A   A        K +  +
Sbjct: 29  PGFLCKVTAHGRKVFMLQYRTNWGERRKPKIGQFGELTVEQARSIAQDWLADVRKGDDPS 88

Query: 63  SPRKKPT---TLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKH 118
           + +       T+K L  ++ +          +  S++ Y D+ I+   G      +T  H
Sbjct: 89  AAKLAARMAPTVKELCEQFIEEYSRPRNKPRTVDSYQGYIDRHILPALGKLKVPDVTRAH 148

Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI--NPCLSVERPKRKTEGIRPWTK 176
           I + ++ +     +A + L  +R +F  A    Y     NPC  V + +   E  R    
Sbjct: 149 ITTLMKDKARIGVTANRVLACLRKMFNMAEVWGYRPDGSNPCRHVPKYREDGE-TRYINN 207

Query: 177 EDMQQFKSFWS-------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ 227
           E++ +  ++         E     LA         R ++        +   N        
Sbjct: 208 EELARLYAYLDRADAQGLEHPTVTLAVRLQFEFSARMTEIRTLEWAWVDFENRRVVWPDS 267

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFF----INNDKQKMNATQFSIWFKAKATKAGVN 283
           KTG +    + +   +LL   P   ++ +    I + K+ +  + +   +K    +A V 
Sbjct: 268 KTGDMSK-PMSEAAYQLLRNAPRIDDSPYVCPAIFDAKKPLPDSTYYNGWKRILGRAEVA 326

Query: 284 K-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
               HG+R  +AT  A++G      MA    KTV Q   Y    D
Sbjct: 327 HVGTHGIRHRAATDIANSGIPIKVGMALTAHKTVTQFMAYVHAED 371


>gi|254504224|ref|ZP_05116375.1| site-specific recombinase, phage integrase family protein
           [Labrenzia alexandrii DFL-11]
 gi|222440295|gb|EEE46974.1| site-specific recombinase, phage integrase family protein
           [Labrenzia alexandrii DFL-11]
          Length = 317

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 39/269 (14%), Positives = 81/269 (30%), Gaps = 29/269 (10%)

Query: 85  GSLAVNSRISFESYFDQIIRKS--------GDFDYRKITTKHIRSGVESRKHTP---SSA 133
             L+  + I++E    Q +R          G  D   +     R  +  R+       S 
Sbjct: 32  RRLSDKTLIAYERDLRQFLRFLTDHLGGAPGIKDIADLRPADFRGFLAQRRRNKVQSRSL 91

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM-------QQFKSFW 186
            + L  +R   K+  R+  +      +V  P++     +P + +D           ++  
Sbjct: 92  ARGLAGIRSFLKFLERRGEINAAASDAVRPPRQLRSLPKPVSAKDAIDITSGDLAMETEA 151

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRA-GVQHLQNNIFSIKTQKTG-TIITVELPDGFMKL 244
              ++       L   GLR S++    G    Q    +++    G     V +     + 
Sbjct: 152 WVEARNAAVLTLLYGCGLRISEALSLTGKMAPQPGTKTMRIIGKGRKERIVPILPAVCEA 211

Query: 245 LAM-------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSAT 295
           +A                F+      +N     +         G+    + H +R   AT
Sbjct: 212 VAHYVKLCPYAISPDGPLFLGARGGPLNPRMIQLSMAKLRGALGLPETATPHALRHSFAT 271

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTK 324
                G     +    G  ++   + YT+
Sbjct: 272 HLLAGGGDLRTIQELLGHASLASTQIYTE 300


>gi|313885490|ref|ZP_07819240.1| site-specific recombinase, phage integrase family [Eremococcus
           coleocola ACS-139-V-Col8]
 gi|312619220|gb|EFR30659.1| site-specific recombinase, phage integrase family [Eremococcus
           coleocola ACS-139-V-Col8]
          Length = 385

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 51/328 (15%), Positives = 114/328 (34%), Gaps = 51/328 (15%)

Query: 49  SALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNS-RISFESYFDQIIRKSG 107
           + L     +  +I SP++   T + + + +       ++  ++ ++  +     I+ K G
Sbjct: 48  AQLLAEIKENGFIESPKQ--MTFEQVFNLWIPIYE-TTVKESTFQMQKDVIRLHILPKFG 104

Query: 108 DFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKR 166
                KITT++ ++ V       S     +   + + ++AV     +  NP   V RPK+
Sbjct: 105 QARVDKITTQYCQTIVNEWFGYYSKYSNLIGLTQRILEFAVNNLNLIKDNPMKKVIRPKK 164

Query: 167 KTEGIR------PWTKEDMQQFKSFWSE--GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218
           K E          ++ + +  F     E    Q  + F  + Y+G+R  + C        
Sbjct: 165 KNELREDKYKAPTYSAKQLNDFLEKVKELDPGQMYVVFRIIAYTGMREGEVCGLKWTDFD 224

Query: 219 NNIFSIKTQKTGTI-----------------ITVELPDGFMKLLAMTP------------ 249
               ++  ++T                     T+ L    +++L                
Sbjct: 225 EVNGTLAVRRTVARGKDYKKILQNTKSVAGQRTIPLDQETIEVLKNWKKTQRIEMFKLGF 284

Query: 250 --IGKETFFINNDKQKMNATQFS----IWFKAKATKAGVNKSAHGVRKFSATISADAGAT 303
               K+ F I N+  +   +Q+        + K     +  + HG+R    T+  ++GA+
Sbjct: 285 NTNHKDQFIITNEFNEFQYSQYPYALLKKIRKKCEIDPI--TVHGLRHTHCTLLIESGAS 342

Query: 304 AHELMATYGWKTVDQA-ETYTKGADRIR 330
             E+    G +      + Y    +  +
Sbjct: 343 LKEVQDRMGHEDESMVLKVYLHINEEKK 370


>gi|255012270|ref|ZP_05284396.1| putative bacteriophage integrase [Bacteroides sp. 2_1_7]
          Length = 411

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 42/269 (15%), Positives = 96/269 (35%), Gaps = 28/269 (10%)

Query: 93  ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH----TPSSAIQFLTSMRVLFKWAV 148
             + +   +I     D   + I  + IR+     K     + ++ I+++  ++ +   ++
Sbjct: 144 KRYLAELIKIKYDKEDLPLKDINGEFIRAFDFYLKTEKECSQNTVIRYMKCLKKITNLSL 203

Query: 149 RQEYVAINPCLSVERP-KRKTEGIRPWTKEDMQQFKSF---WSEGSQPRLAFEFLLYSGL 204
             E++  +P   ++   K        W  +++Q   +           R  F F  Y+GL
Sbjct: 204 ANEWINKDPFTGIKFHEKEVNREFLTW--DELQIITNKKFDLPRIDLVRDIFIFGCYTGL 261

Query: 205 RCSDSCRAGVQHL---QNNIFSIK--TQKTGTIITVELPDG----FMKLLAMTPIGKETF 255
              D  +   +H+   +   F I+   QKT  +  + L D       K        K+  
Sbjct: 262 SFIDIKQLTAEHIVKDREGNFWIRKARQKTKNMCNIPLLDIPLAIIEKYKDNPKCQKQNV 321

Query: 256 FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS-ADAGATAHELMATYG 312
            +          + + + K  +   G++K  S H  R   AT      G +   +    G
Sbjct: 322 LL----PVPCNQKMNSYLKEISDLCGIHKEISTHTARHSYATSVCLANGVSIENVAKMLG 377

Query: 313 WKTVDQAETYTKGADRIRLGIKNSRRISS 341
              ++  + Y +  D+  L   + +++ +
Sbjct: 378 HSNINMTKRYARVLDQSIL--NDMQKVGN 404


>gi|156978022|ref|YP_001448928.1| integrase [Vibrio harveyi ATCC BAA-1116]
 gi|156529616|gb|ABU74701.1| hypothetical protein VIBHAR_06819 [Vibrio harveyi ATCC BAA-1116]
          Length = 341

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 55/315 (17%), Positives = 107/315 (33%), Gaps = 46/315 (14%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD 110
           +T    K            T+   I ++  S  + ++  ++ IS +   +++ R  G   
Sbjct: 3   ITTRAAKAAKEIDMSNSQITVTQYIKKFLHSRKF-AVKPSTFISEKCKANKLTRYFGSTP 61

Query: 111 YRKITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168
              +    I   ++    +++  S  +FLT +R +F  A R   V  NP   ++  K   
Sbjct: 62  IDAVRHSDIIEMLDELHERYSNKSINEFLTILRAVFLRAERDGVVDRNPMNGIKNLKAIK 121

Query: 169 EGIRPWTKEDMQQFKSFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK 225
               P+TK+++ Q     + G +  + A E  +Y+GLR S+      + +   N +  ++
Sbjct: 122 PIPNPFTKKELSQL--HQTLGCEQGKNAVELDVYTGLRISELLALSWEDIDWENRVLLVR 179

Query: 226 TQK----------TGTIITVELPDGFMKLLAMT------------------------PIG 251
             K            +   VEL +  ++ L                              
Sbjct: 180 RAKVLQSYKTTKTKESTRKVELNELAIQALKRQWALTGQLEAVKISVLQDDNKSYIEERV 239

Query: 252 KETFFINNDKQKMNATQFSI--WFKAKATKAGVNKSAHG-VRKFSATISADAGATAHELM 308
              F+ +   Q           +F+A   KAGV     G +R   A+ +  AG     + 
Sbjct: 240 HIVFYNSQTNQPFLHAAQFNNTFFRAFLEKAGVAHRGVGQLRHTFASQNLTAGIAKDWIA 299

Query: 309 ATYGWKTVDQA-ETY 322
              G        + Y
Sbjct: 300 MQMGHADTSMIDDHY 314


>gi|29350147|ref|NP_813650.1| transposase [Bacteroides thetaiotaomicron VPI-5482]
 gi|29342059|gb|AAO79844.1| transposase [Bacteroides thetaiotaomicron VPI-5482]
          Length = 407

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 43/267 (16%), Positives = 90/267 (33%), Gaps = 27/267 (10%)

Query: 85  GSLAVNSRISFESYFDQIIR------KSGDFDYRKITTKHIRSGVESRKHTP----SSAI 134
             +A  +   +E+                D    +++ + I       K       ++A 
Sbjct: 128 TDMAPATVQRYETSLKHTRDFVWETYHKKDVLLDEVSRQFIEDYEFWLKTEKKCCHNTAT 187

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQ 191
           ++L + + + + A+ + ++  +P L + R              ++Q+  S        SQ
Sbjct: 188 KYLKNFKKIIRIALAKGWMKNDPFLEI-RFSLDKVEPDFLEDSEIQKLISKEIDIPRLSQ 246

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVELPDGFMKLLA 246
            R  F F  ++GL  SD      +H+  +           QKT  +  + L +  +K+L 
Sbjct: 247 VRDIFVFCCFTGLAFSDIHGLRKEHIVEDSNGVRWIRKGRQKTKIMCNIPLMEIPLKILE 306

Query: 247 MTPIGKETFFINNDK---QKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAG 301
                +   +          +   + + + K  A   G+ K+   H  R   AT +   G
Sbjct: 307 KYSTNE---YCKKHGVLFPVLCNQKMNAYLKELADICGIKKTLTTHVGRHTFATFALANG 363

Query: 302 ATAHELMATYGWKTVDQAETYTKGADR 328
            +   +    G   V     Y +  DR
Sbjct: 364 VSIESVAKMLGHTNVQMTRHYARVLDR 390


>gi|121602434|ref|YP_988421.1| site-specific tyrosine recombinase XerC [Bartonella bacilliformis
           KC583]
 gi|120614611|gb|ABM45212.1| tyrosine recombinase xerC [Bartonella bacilliformis KC583]
          Length = 322

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 41/268 (15%), Positives = 75/268 (27%), Gaps = 26/268 (9%)

Query: 89  VNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESRKHTP---SSAIQFLTSMR 141
                    +   + +  G          +    +RS +  R+       S  + + SMR
Sbjct: 45  EAYERDTRQFLFFLCQHLGRKPTYHDLADLQVADLRSYMAYRRKQMVSTRSLSRNMASMR 104

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM-------QQFKSFWSEGSQPRL 194
             F +  R+  V +     V  PK      +  T +          Q +      ++   
Sbjct: 105 SFFNYLSRENLVDVPAAKLVRTPKYAKSLPKTLTMKAALTIVKQGNQQEDEPWIAARNAA 164

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSI--KTQKTGTIITVELP----DGFMKLLAMT 248
               L   G+R S++     +   +   +      K G    V L     +     L   
Sbjct: 165 VLTLLYGCGMRISEALALTPKQFSDPNVTSLSIVGKGGKTRLVPLIKTVYESVETYLKCC 224

Query: 249 P---IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGAT 303
           P      +  F       +         +      G+ K+A  H +R   AT     G  
Sbjct: 225 PYPLGDNQPMFRGARGGPLQPAIIQRAVQNLRASLGLPKTATPHALRHSFATHLLSRGGN 284

Query: 304 AHELMATYGWKTVDQAETYTKGADRIRL 331
              +    G  ++   + YT   D  RL
Sbjct: 285 LRIIQELLGHASLSTTQVYT-EIDSDRL 311


>gi|310826662|ref|YP_003959019.1| integrase [Eubacterium limosum KIST612]
 gi|308738396|gb|ADO36056.1| integrase [Eubacterium limosum KIST612]
          Length = 412

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 46/304 (15%), Positives = 111/304 (36%), Gaps = 43/304 (14%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESY-FDQIIRKSGDFDYRKITTKHIRSGV------ 123
           L+  ++++ +++    +  +S   + S  ++ +I   GD+  +++T+  I++ V      
Sbjct: 97  LREWLTDWLENSKKTEIKKSSYTQYSSVVYNHLIPTIGDYRLQEVTSDVIQNYVKAKLSH 156

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
             +  + ++  + ++ +    K AV+   + +NPC+ V  P  K   +  ++KE+ Q+ +
Sbjct: 157 HQKALSSTTVRRHISILSSALKQAVKLGIITVNPCIDVCIPAAKKRKMDVFSKEEYQKLE 216

Query: 184 S--FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKT------------Q 227
              +  +      A    L +G+R  +        +        ++              
Sbjct: 217 KTLYCDQDKVKATAVLLALKTGVRLGELAALRWCDIDFEEKTMMVRDAVHRVNTSEEAGG 276

Query: 228 KTGTIIT-----------VELPDG----FMKLLAMTPIGKETFFINNDKQKMNATQFSIW 272
           K  T+I            + +            A+  +  E  F++     ++   +  +
Sbjct: 277 KKTTMIFEGTKSYYSERNIPMNHEIYTLLKGYEAILSVKGEFVFLSKKGSFIDPRVYQTY 336

Query: 273 FKAKATKAGVNKS-AHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK---GAD 327
           F      AG+ K   H +R   AT +A        L    G   +    ++Y       D
Sbjct: 337 FADVLKNAGIKKRNFHILRHTFATRAASKNMQLAVLSRLLGHSNITVTLKSYIHPLTEQD 396

Query: 328 RIRL 331
           RI +
Sbjct: 397 RIEM 400


>gi|260855535|ref|YP_003229426.1| putative integrase [Escherichia coli O26:H11 str. 11368]
 gi|312966869|ref|ZP_07781087.1| integrase [Escherichia coli 2362-75]
 gi|257754184|dbj|BAI25686.1| putative integrase [Escherichia coli O26:H11 str. 11368]
 gi|312288333|gb|EFR16235.1| integrase [Escherichia coli 2362-75]
          Length = 311

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 49/301 (16%), Positives = 98/301 (32%), Gaps = 12/301 (3%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRK-SAHWGS 86
             G+RIR  +  +S  +      L          NS  ++P ++  LI  + K       
Sbjct: 6   RKGKRIRKKFKTKSDAVLYERWVLAQQHNNEWKGNSIDRRPLSV--LIDLWWKYHGQLMK 63

Query: 87  LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKW 146
              N+R+      + +           + T+ +R     +   PS+  + + ++  +F  
Sbjct: 64  SGHNTRLKLLRLSEAMDDPCVHKLNTTMLTE-LRVSRIEQGIQPSTINREIGALSAMFTA 122

Query: 147 AVRQEY-VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLR 205
            +   + +  NP   ++  K     +   +K +  Q     +E    RLA E LL +G R
Sbjct: 123 LISSGHFLNDNPVQGLKGMKVNEREMGYLSKSECVQLLDALAENPDERLAVEILLSTGAR 182

Query: 206 CSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN 265
             +      + + +   +    K     TV + +   +   +   G +  F   D   + 
Sbjct: 183 WGEVAALEQRRVLHCRITFSKTKNSKNRTVPISESLFE--KIKKRGGKLVFPTLD-YPLV 239

Query: 266 ATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
                   K  A      ++ H +R   A+     G     L    G   +     Y   
Sbjct: 240 RD----VIKTVAPDVPDGQAVHALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIYAHL 295

Query: 326 A 326
           A
Sbjct: 296 A 296


>gi|238920129|ref|YP_002933644.1| integrase family protein [Edwardsiella ictaluri 93-146]
 gi|238869698|gb|ACR69409.1| integrase family protein [Edwardsiella ictaluri 93-146]
          Length = 295

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 40/274 (14%), Positives = 77/274 (28%), Gaps = 34/274 (12%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---- 126
           L  LI  +          ++S    +   D I R+ GD               E R    
Sbjct: 8   LSDLILRWY---ELHGRMLSSGAGRKGKLDAICRRLGDPLAGDFDKGMFARYRERRLNGE 64

Query: 127 -------KHTPSSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKED 178
                  +   ++  +    +  +F    R   +   NP   + + +   + +     ++
Sbjct: 65  WNPKGKKRLQEATVNREQAYLHAVFAELRRLGEWEGGNPLDGIRQFREGDQELAFLYADE 124

Query: 179 MQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
           + +  +     S+  L       L +G R S+        +     +    K+    TV 
Sbjct: 125 ITRLLAACDASSKADLGGIVRVCLATGARWSEVQSLRQSQVLPGRLTFTHTKSKKNRTVP 184

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK----SAHGVRKF 292
           + +    LL                +          FKA   +AG++       H +R  
Sbjct: 185 ISERLQALLP-----------TKQGRLFTP--CYEAFKAALARAGLHLPKGQRTHVLRHT 231

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            A+     G     L    G  T+     Y   A
Sbjct: 232 FASHFMMQGGNILVLQQILGHSTITMTMRYAHFA 265


>gi|226305786|ref|YP_002765746.1| integrase [Rhodococcus erythropolis PR4]
 gi|226184903|dbj|BAH33007.1| putative integrase [Rhodococcus erythropolis PR4]
          Length = 413

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 58/362 (16%), Positives = 114/362 (31%), Gaps = 57/362 (15%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
           +R R GK+ +  R      +      E        +A      +R     P  + TT+  
Sbjct: 5   KRIRGGKVRWVARYVGSDGLERSKTFEFEKQAKAWTAERERELRRGEWIDPADQDTTVGQ 64

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT---- 129
           L   +  SA        +R   E     + R        K+    IR+ V S ++     
Sbjct: 65  LWQAWEMSAT----TDGTRKVRELVGRNLGR-LERTPIGKVRPSDIRTWVHSLRNGRPWV 119

Query: 130 -------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI---RPWTKEDM 179
                  P++   F   +   F  AV    +  +P   + + ++    I        +++
Sbjct: 120 KGCTGLAPNTVGNFQGQLAGCFSMAVADGLLLKSPTEGIAKRRKVDRAISRSELLNADEI 179

Query: 180 QQFKSFWSEG------------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK 225
            Q     S G            +  R+       +GLR  +     ++ +       ++ 
Sbjct: 180 WQLVETASAGVQTGRNWIASQKTLARMII-VGAATGLRAGEIAGLRIRSVDFLRRELAVT 238

Query: 226 -TQKTGTI-------------ITVELPDG----FMKLLAMTPIGKET--FFINNDKQKMN 265
              K+GT                + LPD         L   P    +   F+   ++  +
Sbjct: 239 EQSKSGTSEFLWAPLKTAAASRVIPLPDAAIGALSDELRENPNSDRSMPVFLTARQRMWS 298

Query: 266 ATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETY 322
           ++     F+A   + G++   + H +R F A+    AGA+   +    G +  +   E Y
Sbjct: 299 SSTVGKSFQALRDRCGLDDEVTWHSLRHFYASALIHAGASVKTVQVRLGHEKAETTLEVY 358

Query: 323 TK 324
             
Sbjct: 359 AH 360


>gi|317126072|ref|YP_004100184.1| integrase [Intrasporangium calvum DSM 43043]
 gi|315590160|gb|ADU49457.1| integrase family protein [Intrasporangium calvum DSM 43043]
          Length = 374

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 39/260 (15%), Positives = 79/260 (30%), Gaps = 33/260 (12%)

Query: 87  LAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL-- 143
           L V++   +       I+ + G +    +    +R  V     +  SA     + RVL  
Sbjct: 75  LKVSTATRYRGLMCGHILPRFGAWAVADLRHSDVRDWVNDLSASGLSAGTVRQAHRVLSL 134

Query: 144 -FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202
               +V+   +A N    V+ P+      R    +++ +  +         L+   L + 
Sbjct: 135 ILSESVKDGRIARNVAAGVQLPRAVRADPRFLDADEVARLIA---GAGTNGLSIAVLAFC 191

Query: 203 GLRCSDSCRAGVQHLQ---------------NNIFSIKTQKTGTIITVELPDGFM---KL 244
           GLR  +     V+                           KT    TV  P       + 
Sbjct: 192 GLRFGELAALRVRRANVLRRRLVVAESVTEVGGRLVWSLPKTNRTRTVPFPPSLTPQIEA 251

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKA----KATKAGV-NKSAHGVRKFSATISAD 299
           L       +  F   +   +   +   W +         AG+   + H +R  +A+++  
Sbjct: 252 LCRGKGPDDLLFTAPEGGAL---RLGNWRRRVFDPACRAAGLVGVTPHDLRHTAASLAIA 308

Query: 300 AGATAHELMATYGWKTVDQA 319
           +GA    +    G  +    
Sbjct: 309 SGANVKAVQQMLGHASAAMT 328


>gi|260909620|ref|ZP_05916319.1| integrase [Prevotella sp. oral taxon 472 str. F0295]
 gi|260636263|gb|EEX54254.1| integrase [Prevotella sp. oral taxon 472 str. F0295]
          Length = 409

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 41/210 (19%), Positives = 71/210 (33%), Gaps = 20/210 (9%)

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186
            T  +A   L ++    + A R+    +      +  K   +  +   KE + + K+ + 
Sbjct: 183 STFYNAATHLKTV---CRLAYREGLADVPLFDKAKISKGDKKLPKALDKEALDKLKALYF 239

Query: 187 ----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVEL 237
                E    R  F F  Y+G    D    G +HL  +           QKT     V+L
Sbjct: 240 EDLEEEMETARDIFLFACYTGAAYCDLMELGKKHLVRDDEGSLWLKFNRQKTSVPCRVKL 299

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSAT 295
               ++L+      +    +      M    +  + KA   +AG++ S   H  R   AT
Sbjct: 300 LPEAIRLMEKLHSDERETLL----PFMGYVTYQSYLKALRLRAGISFSFTTHTARHTFAT 355

Query: 296 IS-ADAGATAHELMATYGWKTVDQAETYTK 324
           +   + G     +    G   V   E Y K
Sbjct: 356 LITLEQGVPIETVSKMLGHSNVSMTERYAK 385


>gi|254508879|ref|ZP_05120988.1| super-integron integrase IntIA [Vibrio parahaemolyticus 16]
 gi|219548193|gb|EED25209.1| super-integron integrase IntIA [Vibrio parahaemolyticus 16]
          Length = 320

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 50/295 (16%), Positives = 93/295 (31%), Gaps = 59/295 (20%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWA 147
           A  +  ++  +  + I  +      K+   H+ + +         A +          + 
Sbjct: 19  APKTIQAYLLWITKFILFNDKAHPSKLNESHVEAFLTHLAVDCKVAAKTQALALNSISFL 78

Query: 148 VRQEYVAINPCLSVERPKRKT----EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203
            R+ +      LSVE   +K+    +     TK++M++F        + +L    L  SG
Sbjct: 79  YREYFRTP---LSVEMKFQKSQLDRKLPVVLTKDEMRRFLMHIDP--RYKLHIMLLYGSG 133

Query: 204 LRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLAMTPIGKETFF---IN 258
           LR  +  R  VQ +  +  +++    K G    V L    + LL         ++   IN
Sbjct: 134 LRVMECVRLRVQDIDYDYKALRVWQGKGGKNRVVTLASEAISLLKEQQGIALRYYKKDIN 193

Query: 259 NDK-------------------------------------------QKMNATQFSIWFKA 275
           +                                               +N T      K 
Sbjct: 194 SPGYAGVHIRPSLQRKYPEAELDFNWHFLFPSHQLSVDPNTGELKRHHINETSLQRAVKR 253

Query: 276 KATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
            A +AG+ K  + H +R   AT   ++GA    +    G   V   + YT   +R
Sbjct: 254 SAKEAGITKAVTCHTLRHSFATHLLESGADIRTVQEQLGHSDVKTTQIYTHVIER 308


>gi|254439723|ref|ZP_05053217.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
 gi|198255169|gb|EDY79483.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
          Length = 360

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 49/322 (15%), Positives = 113/322 (35%), Gaps = 20/322 (6%)

Query: 9   PFVTKERTRHGKIIYYFRK---GHGRRIRL-PYPHESTFIPAYMSALTGSTPKREYINSP 64
             +     +  K  +YF+K   G  +RI +  +P  S       +        R    + 
Sbjct: 28  KGLVLFVGKRSKT-WYFQKDVGGQTKRILIGRFPIISAQAARQTALGFALEMGRGAGKAA 86

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
           +    TL+  +  Y         +  ++I   +     ++        +I+         
Sbjct: 87  QLGAPTLEAAMEGYLARPKLR--SETNKIGMRAQLTLHLKDWMRLPLDEISKAMAVRRHH 144

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
               +PS+A   L S R ++  A R   +   P +++E  + K +G      +  ++   
Sbjct: 145 DMAGSPSAANHVLRSFRAIYNHARRTCDLPECPTMAIEWFEDKPDGRIIENLKHWRKTID 204

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
                   R+ +E LL++GLR ++      + +Q +   +   K G    + +     ++
Sbjct: 205 DLPNPIH-RVFYELLLFTGLRKTEVFTLKWEQIQEDRIHLPMTKNGRSFDLPISQLHHEI 263

Query: 245 LAMT-PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGAT 303
           LA   P+ ++  F          ++     + +     +  + H  R+  AT++ +AG  
Sbjct: 264 LAPLRPLSRDWVF------PSPKSESGHITRPER----LKYNPHMHRRTFATVAMEAGVL 313

Query: 304 AHELMATYGWKTVDQA-ETYTK 324
              +        +    + YT+
Sbjct: 314 EEIVGRLLNHTPLSITGQRYTR 335


>gi|155024|gb|AAA72104.1| integrase [Shigella sonnei]
          Length = 337

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 42/306 (13%), Positives = 93/306 (30%), Gaps = 62/306 (20%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129
           ++ + R+   +   ++ +  ++  +    IR  G      + +  + + +      RK +
Sbjct: 16  VLDQLRERIRYFHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75

Query: 130 PSSAIQFLTSMRVLFK--WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            S+  Q L ++   +         ++       + RP+         T +++ +   F  
Sbjct: 76  VSTHRQALAALLFFYGKVLCTDLPWLQ-----EIGRPRPSRRLPVVLTPDEVVRILGFL- 129

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQH--LQNNIFSIKTQKTGTIITVELPDGFMKLL 245
           EG   RL  + L  +G+R S+  +  V+     +    ++  K      + LP+     L
Sbjct: 130 EGEH-RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSL 188

Query: 246 AMTPIGKETFFINN---------------------------------------------D 260
                    +++ +                                              
Sbjct: 189 REQLSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVR 248

Query: 261 KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           +  M    F   FK    +AG+ K  + H +R   AT    +G     +    G   V  
Sbjct: 249 RHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVST 308

Query: 319 AETYTK 324
              YT 
Sbjct: 309 TMIYTH 314


>gi|323694873|ref|ZP_08109025.1| phage integrase family Site-specific recombinase [Clostridium
           symbiosum WAL-14673]
 gi|323501067|gb|EGB16977.1| phage integrase family Site-specific recombinase [Clostridium
           symbiosum WAL-14673]
          Length = 280

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 38/281 (13%), Positives = 94/281 (33%), Gaps = 29/281 (10%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           L  EY +       + N+   +     + +      +  K      +  +    +  +S 
Sbjct: 13  LFGEYLEQDE---KSKNTIEKYRRDLRKFVEYIDGEEVTKELVIGFKEYLVEH-YAVNSV 68

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
              + S+    ++A    +        V++ K++ +   P  ++++ + + F    +  R
Sbjct: 69  NSIIASLNRFMQFA---GWQEF----RVKQLKKQRQVYCP-EEKELTKQEYFELIRTAKR 120

Query: 194 -------LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE--LPDGFMKL 244
                  L  + +  +G+R S+     VQ ++N +  +  +     + +   L    M  
Sbjct: 121 EGKEKIGLIIQTIGSTGIRISELPSITVQAVKNGVAEVDCKGKNRQVLLPRKLLVKLMYY 180

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAG 301
           +    I     FI      ++ +      K     AGVN+     H +R   A       
Sbjct: 181 IRKEHIQCGPIFITKQGNPLDRSNIWKEMKKICRLAGVNEKKVFPHNLRHLFAYSFYQME 240

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
               +L    G   ++    Y   +     G+++ ++I  +
Sbjct: 241 KDIAKLADLLGHSNINTTRIYIVSS-----GVEHRKQIEKM 276


>gi|323186140|gb|EFZ71495.1| integrase [Escherichia coli 1357]
          Length = 374

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 50/301 (16%), Positives = 99/301 (32%), Gaps = 12/301 (3%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRK-SAHWGS 86
             G+RIR  +  +S  +      L          NS  ++P ++  LI  + K       
Sbjct: 69  RKGKRIRKKFKTKSDAVLYERWVLAQQHNNEWKGNSIDRRPLSV--LIDLWWKYHGQLMK 126

Query: 87  LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKW 146
              N+R+      + +           + T+ +R     +   PS+  + + ++R +F  
Sbjct: 127 SGHNTRLKLLRLSEAMDDPCVHKLNTTMLTE-LRVSRIEQGIQPSTINREIGALRAMFTA 185

Query: 147 AVRQEY-VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLR 205
            +   + +  NP   ++  K     +   +K +  Q     +E    RLA E LL +G R
Sbjct: 186 LISSGHFLNDNPVQGLKGMKVNEREMGYLSKSECVQLLDALAENPDERLAVEILLSTGAR 245

Query: 206 CSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN 265
             +      + + +   +    K     TV + +   +   +   G +  F   D   + 
Sbjct: 246 WGEVAALEQRRVLHCRITFSKTKNSKNRTVPISESLFE--KIKKRGGKLVFPTLD-YPLV 302

Query: 266 ATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
                   K  A      ++ H +R   A+     G     L    G   +     Y   
Sbjct: 303 RD----VIKTVAPDVPDGQAVHALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIYAHL 358

Query: 326 A 326
           A
Sbjct: 359 A 359


>gi|307822732|ref|ZP_07652963.1| integrase family protein [Methylobacter tundripaludum SV96]
 gi|307736336|gb|EFO07182.1| integrase family protein [Methylobacter tundripaludum SV96]
          Length = 340

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 47/316 (14%), Positives = 97/316 (30%), Gaps = 15/316 (4%)

Query: 16  TRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL-KWL 74
            R       F    GRRI+      +                   +     KP    K  
Sbjct: 5   KRKDTWWIQFTAPDGRRIQ--QTAGTQLKDEAQELHDRLKADAWRVKYLGAKPRYFWKDA 62

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
           +  +         ++ +      + D+ +      +  K+    I++   +   + S+  
Sbjct: 63  VIRWLTEQG-HKKSIETDKVHLRWLDKHLSDVYLDEINKLKIDLIKNARLADGVSNSTVN 121

Query: 135 QFLTSMRVLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
           + L+ +R +   A    E++   P             +R  T+++  +      E  +  
Sbjct: 122 RLLSILRAILNRAKDDWEWIDSVP--GFRFLPEPAGRVRWITRDESVRLIEELPEHLKFM 179

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGFMKLLAMTP 249
           + F     +GLR S+        +              K G  I V L D  + ++  + 
Sbjct: 180 VRFALA--TGLRESNVTHLQWSQIDIQRRCAWVLADQAKAGKAIAVPLNDDALDVI-ASQ 236

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELM 308
           +GK    +   K  +     +  F+    +AG++    H +R   A+    +G   H L 
Sbjct: 237 VGKHDVRVFTYKGNVVNDGNTKSFRKALKRAGIDDFRWHDLRHTWASWHVQSGTPLHVLK 296

Query: 309 ATYGWKTVDQAETYTK 324
              GW  +     Y  
Sbjct: 297 ELGGWADISMVLRYAH 312


>gi|297592290|gb|ADI47028.1| Rci [Escherichia coli]
          Length = 365

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 44/235 (18%), Positives = 83/235 (35%), Gaps = 13/235 (5%)

Query: 96  ESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWA-VRQEYVA 154
           E Y D+I     D    +       +    R+ T ++    L  +  LF  A V      
Sbjct: 38  ERYMDEITTV--DIATYRDQRLAQINPRTGRQITGNTVRLELALLSSLFNIASVEWGTCR 95

Query: 155 INPCLSVERPKRKTEGIRPWTKEDMQQF-KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG 213
           +NP   V +PK  +   R  T  + ++  + F  +  Q  + F   L + +R  +     
Sbjct: 96  MNPVELVRKPKISSGRDRRLTSGEERRLSRYFRDKNQQLYVIFHLALETAMRQGEILTLR 155

Query: 214 VQHLQN--NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI 271
            +HL     +  +   K G    V L       L + P       IN +     ++ F  
Sbjct: 156 WEHLDLQHGVAHLPETKNGLPRDVPLSRKARNYLQILPQQ-----INGNVFSYTSSGFKS 210

Query: 272 WFKAKATKAGV-NKSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTK 324
            ++       + N   H +R  + +   + G     E+ A  G ++++  + YT 
Sbjct: 211 AWRTALLDLKIENLHFHDLRHEAISRFFELGTLNVIEVAAISGHRSLNMLKRYTH 265


>gi|126725541|ref|ZP_01741383.1| site-specific tyrosine recombinase XerC [Rhodobacterales bacterium
           HTCC2150]
 gi|126704745|gb|EBA03836.1| site-specific tyrosine recombinase XerC [Rhodobacterales bacterium
           HTCC2150]
          Length = 306

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 46/283 (16%), Positives = 86/283 (30%), Gaps = 26/283 (9%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF----DYRKITTKHIRSGVESRKH 128
           WL           +          S+   + +  G+       + +  + IRS +   + 
Sbjct: 15  WLSHIKSLDDAAQNTLDAYTRDLTSFLSFLTQHFGETSGISALKAVGQRDIRSWMAFERG 74

Query: 129 TPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +  SA    + L++++  ++W    E       LS   PK + +  RP   +  +     
Sbjct: 75  SGVSARSLARKLSAVKSFYRWFGEHEGFEPTAVLSARTPKFQKKLPRPIAPDAARAMIDT 134

Query: 186 WS-------EGSQPRLAFEFLLYSGLRCSDSCRA-GVQHLQNNIFSIKTQKTGTIITVEL 237
                     G +       L   GLR S++    G      ++  I   K G    V +
Sbjct: 135 VPLQSEKNWVGLRDTAVVTVLYGCGLRISEALGLLGSDAPLPDVLRI-LGKGGKERIVPV 193

Query: 238 PDGFM----KLLAMTPI---GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HG 288
                    + +   P         F       +N             + G+  +A  H 
Sbjct: 194 IPAAKRAVDEYIRACPHPIEADSPLFRGIRGGALNPRIIQGVVAKARMQLGLPATATPHA 253

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           +R   AT   +AG     +    G  ++   + YT   D  RL
Sbjct: 254 LRHSFATHLLEAGGDLRSIQELLGHASLSTTQAYT-AVDTARL 295


>gi|319937805|ref|ZP_08012208.1| integrase [Coprobacillus sp. 29_1]
 gi|319807240|gb|EFW03854.1| integrase [Coprobacillus sp. 29_1]
          Length = 390

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 61/377 (16%), Positives = 111/377 (29%), Gaps = 59/377 (15%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
            ++ K     G   Y +          P P      P+            E       K 
Sbjct: 17  KYLYKYVDAFGNTKYVYAWRLTP--TDPTPKGKREKPSLRELEQQIRRDIEDGIDSTGKK 74

Query: 69  TTLKWLISEY-RKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRSGVESR 126
            T   L   Y +++A   ++  +++   +     +   K G      I     +      
Sbjct: 75  MT---LCQLYAKQNAQRANVKKSTQKQRKQLMRLLKEDKLGARSIDTIKPSDAKEWALRM 131

Query: 127 KHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPC--LSVERPKRKTEGIRPWTKEDMQQ 181
           K      ++      S++  F  A++ + V  NP      E  +  T+     T+E  Q 
Sbjct: 132 KDKGFSYNTINNHKRSLKASFYIAIQDDCVRKNPFDFKLSEVLENDTKEKVALTEEQEQA 191

Query: 182 FKSFWSEGSQPRLAFE---FLLYSGLRCSDSCRAGVQHLQ----------------NNIF 222
             SF    +     ++    LL +GLR S+ C   V  +                    +
Sbjct: 192 LLSFIKTDNVYHKHYDDVLILLKTGLRISELCGLTVADIDFKNEVVIIDHQLLKSKEQGY 251

Query: 223 SIKTQKTGTIIT-VELPDG----FMKLLAMTPIGKET--------FFINNDKQKMNATQF 269
            I+T KT + I  V L       F +++   P  +           F+N+  +   A  +
Sbjct: 252 YIETPKTKSGIRQVPLSRETIQAFQRVMKKRPKAEPFVIDGQSNFLFVNHKGKPKVAIDY 311

Query: 270 SIWFKAKATKAGVNK--------SAHGVRKFSATISADAGATAHELMATYGWKTVD---- 317
           +  F     K   +         + H +R    T  A       +L    G   +     
Sbjct: 312 NALFVRMVKKYNKHHKDNPLPHITPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISITMN 371

Query: 318 ---QAETYTKGADRIRL 331
               A   T  ++  RL
Sbjct: 372 WYAHASIDTAKSEVQRL 388


>gi|194398664|ref|YP_002038654.1| phage integrase family site-specific recombinase [Streptococcus
           pneumoniae G54]
 gi|194358331|gb|ACF56779.1| site-specific recombinase, phage integrase family [Streptococcus
           pneumoniae G54]
          Length = 377

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 40/276 (14%), Positives = 94/276 (34%), Gaps = 41/276 (14%)

Query: 90  NSR-ISFESYFDQ---IIRKSGDFDYRKI--TTKHIRSGVESRKHTP---SSAIQFLTSM 140
           N++  ++  +      ++   G   Y  I    +H+R  V      P   ++  + +  +
Sbjct: 85  NTQDNNYNKHIKDYFSMVDNVGKLTYEDIYQFREHLRQKVAKNSDKPLSTNTINKIMILL 144

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-SEGSQPRLAFEFL 199
           + +F   +R+ Y + NP   +++   +   ++ WT ++ Q+F + +  E    +L F  L
Sbjct: 145 KKIFDVGLRKGYYSSNPAKLIKKLPIEKTKMQFWTVKEFQKFLTLFEPEEYNIKLLFTVL 204

Query: 200 LYSGLRCSDSCRAGVQHLQ---------------NNIFSIKTQKTGTII-TVELPDGFMK 243
            ++GLR  ++     Q +                  +  I T KT      + +     +
Sbjct: 205 FFTGLRLGEALALTWQDIDFSSNTIHITKSVYVNKGVTHISTTKTKAGTRRIVINKKLSQ 264

Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSI------------WFKAKATKAG-VNK-SAHGV 289
            L      ++          +    F               +K    +   + K   H  
Sbjct: 265 ELQDWEKRQKHLLEQFTNNSLTLQVFQNSPITITKNAIEKQYKKIIERDSTLKKIRIHDF 324

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
           R   A++  + G     +    G  ++    +TY+ 
Sbjct: 325 RHSHASLLINQGEDYLVVKERLGHASITTTIDTYSH 360


>gi|168214027|ref|ZP_02639652.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Clostridium perfringens CPE str. F4969]
 gi|170714519|gb|EDT26701.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Clostridium perfringens CPE str. F4969]
          Length = 368

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 54/336 (16%), Positives = 114/336 (33%), Gaps = 46/336 (13%)

Query: 41  STFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD 100
             F+  Y      S+        P+ K   LK  I ++  +    S+ +N+R ++ S  +
Sbjct: 42  EKFVNEY------SSKVDNGFLLPKSKDIYLKDFILDWFHNHKVLSIGINTRNNYLSRIE 95

Query: 101 -QIIRKSGDFDYRKITTKHIRSGVE-----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVA 154
             II   G++   ++ T  I++             PSSA + + ++    K+A + + + 
Sbjct: 96  TYIIPLLGNYKLTELDTLTIQNFYNHLLTKDNPLKPSSAKKVIEALSNCLKYAKKLKLIT 155

Query: 155 INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGV 214
             P   +E+   +   I  W+K+ +  F +   + +           +G+R  + C    
Sbjct: 156 YLPT-DIEKVNIEKPKIEFWSKQQLDFFLNEIKD-TYLYFPVLICALTGVRVGELCGLKW 213

Query: 215 QHLQ--NNIFSIKTQ-----------------KTGTIITVELPDGFMKLLAMTPIGKETF 255
             +       +I  Q                  T +  T+ +P   +K           F
Sbjct: 214 CDVDFRRGYLNITRQVISDKSTNTLVCTENLKTTKSDRTISIPKILLKEFEKNLKDPNDF 273

Query: 256 FINNDKQKMN-----ATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMAT 310
            + + + KM      +  F+        +     S HG+R   AT+    G     +   
Sbjct: 274 IVLSRENKMCNPRNISMDFTKKVNKYKDRL-PQISIHGLRHTHATLLILNGENIKIVSDR 332

Query: 311 YGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVVDS 345
            G   +     TYT       +  +     + ++D+
Sbjct: 333 LGHNDITTTLNTYTH------IMEEMKDNTAELLDN 362


>gi|13488149|ref|NP_085856.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
 gi|14028105|dbj|BAB54697.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
          Length = 299

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 34/254 (13%), Positives = 83/254 (32%), Gaps = 17/254 (6%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHTPSSAIQFLTSM 140
            +L+ +++ S+     Q  R         +  + +R+        +K  P S    ++++
Sbjct: 21  RNLSPHTQDSYLLQVSQFARHFAKSP-ALLCQEDVRTYQVYLTNEKKLAPKSIHVAVSAL 79

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200
           R L++  +  E+   +    +  P+         + E++  F     E  + +       
Sbjct: 80  RFLYRVTLGFEW-DFD--RIIPCPRVPKTLAVILSPEEVLHFLG-CVESLKHQTILTTCY 135

Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLL----AMTPIGKET 254
            +GLR S++     + +      ++    K      V L    ++ L             
Sbjct: 136 AAGLRISEAVHLRPEAIDRQRMVLRVDQGKGQKDRYVMLSARLLETLTDYWRAVRPKTWM 195

Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYG 312
           F      + ++              +G+ K  + H +R   A    +AG     +    G
Sbjct: 196 FPGTIPNEPISTNAVQNACGKAHRLSGLGKPVTPHSLRHAFACHLLEAGTDIRTIQLLLG 255

Query: 313 WKTVDQAETYTKGA 326
            +++     Y + A
Sbjct: 256 HRSLSTTSQYLRIA 269


>gi|193065311|ref|ZP_03046383.1| integrase [Escherichia coli E22]
 gi|213615968|ref|ZP_03371794.1| phage integrase [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-2068]
 gi|192927105|gb|EDV81727.1| integrase [Escherichia coli E22]
          Length = 312

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 49/301 (16%), Positives = 98/301 (32%), Gaps = 12/301 (3%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRK-SAHWGS 86
             G+RIR  +  +S  +      L          NS  ++P ++  LI  + K       
Sbjct: 6   RKGKRIRKKFKTKSDAVLYERWVLAQQHNNEWKGNSIDRRPLSV--LIDLWWKYHGQLMK 63

Query: 87  LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKW 146
              N+R+      + +           + T+ +R     +   PS+  + + ++  +F  
Sbjct: 64  SGHNTRLKLLRLSEAMDDPCVHKLNTTMLTE-LRVSRIEQGIQPSTINREIGALSAMFTA 122

Query: 147 AVRQEY-VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLR 205
            +   + +  NP   ++  K     +   +K +  Q     +E    RLA E LL +G R
Sbjct: 123 LISSGHFLNDNPVQGLKGMKVNEREMGYLSKSECVQLLDALAENPDERLAVEILLSTGAR 182

Query: 206 CSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN 265
             +      + + +   +    K     TV + +   +   +   G +  F   D     
Sbjct: 183 WGEVAALEQRRVLHCRITFSKTKNSKNRTVPISESLFE--KIKKRGGKLVFPTLD----- 235

Query: 266 ATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
            +      K  A      ++ H +R   A+     G     L    G   +     Y   
Sbjct: 236 YSLVRDVIKTVAPDVPDGQAVHALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIYAHL 295

Query: 326 A 326
           A
Sbjct: 296 A 296


>gi|307564601|ref|ZP_07627138.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
 gi|307346686|gb|EFN91986.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
          Length = 439

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 43/283 (15%), Positives = 99/283 (34%), Gaps = 25/283 (8%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
           K  +  +R S    +L + +R +                 + +   +    +    +  S
Sbjct: 130 KATVRAFRDSRKNFALFLKTREN--------EDCLPKEADKDLIESYRLFMLRDLGNKES 181

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS- 190
           +    L  +  + + A+++ Y+  +P   ++  +  T      T +D+ +  S+    S 
Sbjct: 182 TVSNRLRHLHQVIRKALQERYIHADPFELID-IETPTYERNALTSDDLHKLLSYRPHRSV 240

Query: 191 --QPRLAFEFLLYSGLRCSDSCRAGVQHL-----QNNIFSIKTQKTGTIITVELPDGFMK 243
               RL F    ++GL  SD  +  +  +          S+   KT     V L     +
Sbjct: 241 DNHCRLIFLLGCFTGLAFSDLKKLRMGDVYTFGDGRRYISLCRTKTQNRSIVPLLPIAEE 300

Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN----KSAHGVRKFSATIS-A 298
           +L +   G++   +   ++    + F+   +    KAG+      ++H  R   AT    
Sbjct: 301 ILTIVSDGRKEGLL--FREFPTNSHFNRKIRDIIIKAGLPSHTEATSHTARHTFATTICL 358

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
           + G     +    G + +   E Y K   + ++  +    + S
Sbjct: 359 ENGLPIETVSKMLGHRFISTTELYAK-VSKSKIAREMQPLMGS 400


>gi|254820912|ref|ZP_05225913.1| phage-related integrase [Mycobacterium intracellulare ATCC 13950]
          Length = 403

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 40/283 (14%), Positives = 91/283 (32%), Gaps = 27/283 (9%)

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122
           +PR    T++     + +   +      +     ++  QI+ + GD    ++    +++ 
Sbjct: 81  APRDAKLTVQQWCDTWIE--GYKVHREGTVREARTHIRQIVTEFGDAPLTQVRPSQVKAW 138

Query: 123 VESRKHTPSSAIQFL---TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
               +     A       + +  +   AV    +  NPC     P      +   T E +
Sbjct: 139 TARLRADGMKASYIYALHSRLSQILSDAVHDGVLGRNPCSRRTAPPMGKAKVYVATTEQV 198

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ------KT-G 230
                   +  +  +A     ++GLR ++     V  +     +   K Q      KT G
Sbjct: 199 WALHDAVPDPLK--VAVLLGAFAGLRVAEVSGLRVSDVDFIRGVVHPKQQWPDKPLKTEG 256

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKA---TKAGVNK--- 284
           +   + +P     LL+ +        +  +       +   W   +A    + G+     
Sbjct: 257 SSAPIPIPQDLALLLSASVQKYPAEMMVTNGPG--TDRCGPWIIERAIRDVRGGIEGLPE 314

Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
             S H +R + A++    G     + A     +     +TY+ 
Sbjct: 315 GFSFHDLRHYLASLLIARGCDVKTVQARLRHSSAKTTLDTYSH 357


>gi|158425506|ref|YP_001526798.1| putative integrase protein [Azorhizobium caulinodans ORS 571]
 gi|158332395|dbj|BAF89880.1| putative integrase protein [Azorhizobium caulinodans ORS 571]
          Length = 445

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 58/363 (15%), Positives = 104/363 (28%), Gaps = 42/363 (11%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
           L  F+ + RT  G+     R+    R  L    E     A    +  +        + R 
Sbjct: 43  LKSFIVQYRTPEGR----HRRRVIGRYGL-MTVEQARDAARDILMAVAKGCDPEEAATRT 97

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRI---------SFESYFDQIIRKSGDFDYRKITTK 117
              T+  +   Y   A  G +    R                  I    G      +   
Sbjct: 98  DDLTIGAVCDWYLDEAEAGRILGKRRRPIKASTLAMDRSRIDAHIKPLLGKRIINTLKLG 157

Query: 118 HIRSGVESRKHTPSS-----------------AIQFLTSMRVLFKWAVRQEYVAINPCLS 160
            I           +S                 A + ++++  + + AVR   +  NP   
Sbjct: 158 DIEGAQADIAAGKTSKARVGSRGGATTGGEGVAARTMSTLHSILEHAVRLGKITSNPAKG 217

Query: 161 VERPKRKTEGIRPWTKEDMQQF------KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG- 213
           V R    T   R  ++ ++++            E      A  F L +GLR  +      
Sbjct: 218 VRRL-ASTPRDRRLSRAEIEKLGKAMRIAEQDGEHPTGLAAIRFFLMTGLRRMEGLALER 276

Query: 214 -VQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW 272
              H +         K+G    V +    + LL   P     FF   D  + +       
Sbjct: 277 AWLHDEEGSIRFPDTKSGAQTRV-IGRAAVDLLLAQPQAGSRFFFPADWGEGHFVGIVRV 335

Query: 273 FKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
                  A + + + H +R   A+++ D G +   + A  G       + Y    + +RL
Sbjct: 336 LDRLCAMARLEDVTPHTLRHTFASVAGDLGFSELTIAALLGHAARGVTQRYIHIDEALRL 395

Query: 332 GIK 334
              
Sbjct: 396 AAD 398


>gi|153005509|ref|YP_001379834.1| phage integrase family protein [Anaeromyxobacter sp. Fw109-5]
 gi|152029082|gb|ABS26850.1| phage integrase family protein [Anaeromyxobacter sp. Fw109-5]
          Length = 381

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 38/281 (13%), Positives = 83/281 (29%), Gaps = 19/281 (6%)

Query: 62  NSPRKKPTTLKWLISEY-RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
              +K+  TL     ++    A       ++  + E  + + +   GD    ++    ++
Sbjct: 68  APVKKEVLTLAEFWPKFIEGHAQANQQKPSTIATHERIWKKHLSSLGDRRLDEVDDAQVQ 127

Query: 121 ---SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
                + ++K  P S    +T +  + K  V    +   PC  +   K     +  +  E
Sbjct: 128 LLKGRLSAQKLKPKSVNNVVTVLSKMLKVGVEWRVIEAMPCR-IRLLKSAKPVVEFYEDE 186

Query: 178 DMQQFKSFW-SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ--------- 227
           ++++  S       +  +A      +GLR  +        L      +K Q         
Sbjct: 187 ELERLVSAAGKVDPRTHVAVLLGGDAGLRLGEILALEWSDLDFTRGLMKVQRSECDGAVT 246

Query: 228 --KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--N 283
             K G    V +       L      K    +    + +              +AG+   
Sbjct: 247 LPKGGKPRVVPMTARLKAALHAHRHLKGPRILYEGIEPITKWPLKWLIDVAERRAGLRQG 306

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              H +R    +  A        +    G ++V+    Y  
Sbjct: 307 GRVHILRHTFCSRLAARNVPMLTIKGLAGHQSVETTMRYLH 347


>gi|7339576|emb|CAB82887.1| integrase [Salmonella enterica subsp. enterica serovar Typhimurium]
          Length = 334

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 42/306 (13%), Positives = 94/306 (30%), Gaps = 62/306 (20%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129
           ++ + R+   +   ++ +  ++ ++    IR  G      + +  + + +      RK +
Sbjct: 16  VLDQLRERIRYLHYSLRTEQAYVNWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75

Query: 130 PSSAIQFLTSMRVLFK--WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            S+  Q L ++   +         ++       + RP+         T +++ +   F  
Sbjct: 76  VSTHRQALAALLFFYGKVLCTDLPWLQ-----EIGRPRPSRRLPVVLTPDEVVRILGFL- 129

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQH--LQNNIFSIKTQKTGTIITVELPDGFMKLL 245
           EG   RL  + L  +G+R S+  +  V+     +    ++  K      + LP+     L
Sbjct: 130 EGEH-RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPEAVAPSL 188

Query: 246 AMTPIGKETFFINN---------------------------------------------D 260
                    +++ +                                              
Sbjct: 189 REQLSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVR 248

Query: 261 KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           +  M    F   FK    +AG+ K  + H +R   AT    +G     +    G   V  
Sbjct: 249 RHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVST 308

Query: 319 AETYTK 324
              YT 
Sbjct: 309 TMIYTH 314


>gi|254452471|ref|ZP_05065908.1| phage integrase family protein, putative [Octadecabacter
           antarcticus 238]
 gi|198266877|gb|EDY91147.1| phage integrase family protein, putative [Octadecabacter
           antarcticus 238]
          Length = 368

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 47/322 (14%), Positives = 108/322 (33%), Gaps = 20/322 (6%)

Query: 9   PFVTKERTRHGKIIYYFRK---GHGRRIRL-PYPHESTFIPAYMSALTGSTPKREYINSP 64
             +     +  K  +YF+K   G  +RI +  +P  S       +        R    + 
Sbjct: 38  KGLVLFVGKRSKT-WYFQKDVGGQTKRILIGRFPIISAQAARQTALGFALEMGRGAGKAA 96

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
           +    TL+  +  Y         +  ++I   +     ++        +I+         
Sbjct: 97  QIGAPTLEAAMEVYLARPKLR--SETNKIGMRAQLTLHLKDWMRLPLDEISKAMTVRRHH 154

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
               +PS+A   L S R ++  A R   +   P +++E  + K +G      +  ++   
Sbjct: 155 DMAGSPSAANHVLRSFRAIYNHARRTCDLPECPTMAIEWFEDKPDGRIIENLKHWRKTID 214

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
                   R+ +E LL++GLR ++        +  +   +   K G    + +     ++
Sbjct: 215 DLPNPIH-RVFYELLLFTGLRKTEVFTLKWDQILEDRIHLPMTKNGRSFDLPISQLHHEI 273

Query: 245 LAMT-PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGAT 303
           LA   P+  +  F          ++     +       +  + H  R+  AT++ +AG  
Sbjct: 274 LAPLRPLSSDWVF------PSPKSETGHITRPVR----LKYNPHMHRRTFATVAMEAGVL 323

Query: 304 AHELMATYGWKTVDQA-ETYTK 324
              +        +    + Y +
Sbjct: 324 EEIVGRLLNHTQLSITGQRYVR 345


>gi|254438003|ref|ZP_05051497.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
 gi|198253449|gb|EDY77763.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
          Length = 368

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 46/322 (14%), Positives = 109/322 (33%), Gaps = 20/322 (6%)

Query: 9   PFVTKERTRHGKIIYYFRK---GHGRRIRL-PYPHESTFIPAYMSALTGSTPKREYINSP 64
             +     +  K  +YF+K   G  +RI +  +P  S       +        R    + 
Sbjct: 38  KGLVLFVGKRSKT-WYFQKDVGGQTKRILIGRFPIISAQAARQTALGFALEMGRGAGKAA 96

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
           +    TL+  +  Y         +  +++   +     ++        +I+         
Sbjct: 97  QIGAPTLEAAMEVYLARPKLR--SETNKVGMRAQLTLHLKDWMRLPLDEISKSMAVRRHH 154

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
               +PS+A   L S R ++  A R   +   P +++E  + K +G      +  ++   
Sbjct: 155 DMAGSPSAANHVLRSFRAIYNHARRTCDLPECPTMAIEWFEDKPDGRIIENLKHWRKTID 214

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
                   R+ +E LL++GLR ++      + +  +   +   K G    + +     ++
Sbjct: 215 DLPNPIH-RVFYELLLFTGLRKTEVFTLKWEQILEDRIHLPMTKNGRSFDLPISQLHHEI 273

Query: 245 LAMT-PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGAT 303
           LA   P+  +  F          ++     +       +  + H  R+  AT++ +AG  
Sbjct: 274 LAPLRPLSSDWVF------PSPKSETGHITRPVR----LKYNPHMHRRTFATVAMEAGVL 323

Query: 304 AHELMATYGWKTVDQA-ETYTK 324
              +        +    + Y +
Sbjct: 324 EEIVGRLLNHTPLSITGQRYVR 345


>gi|159902922|ref|YP_001550266.1| site-specific recombinase XerD [Prochlorococcus marinus str. MIT
           9211]
 gi|159888098|gb|ABX08312.1| Site-specific recombinase XerD [Prochlorococcus marinus str. MIT
           9211]
          Length = 327

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 50/317 (15%), Positives = 105/317 (33%), Gaps = 27/317 (8%)

Query: 26  RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG 85
           RK   +  +       +    + +A+ GS  +   ++ P   P  LK  I  Y       
Sbjct: 16  RKKQYQGPKAKTFSSKSQAQLWANAVEGSLKRPTQLDQP--PPQILKEAIDLYIDGPLQK 73

Query: 86  SLA-VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTSMRV 142
             +  N +    +  +      G     +++ +H     + R  K  P++ ++ L  +RV
Sbjct: 74  HRSGHNEQYPLRAMANSW---MGGVLLSEMSIRHFALWRDERLLKVKPNTVMRELRILRV 130

Query: 143 LFKWAVRQE--YVAINPCLSVE-RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE-F 198
           L  WA  ++   +  NP   ++ R            +++    +      +   L     
Sbjct: 131 LLDWAKDEQGCLLKSNPARELKVRGTHDARIPHLTKQQEQDLLQQLAQAKNPNHLRLTQL 190

Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--------TIITVELPDGFMKLLAMTPI 250
            L +G+R S+        L  ++  +   +          +   V L    ++LLA  P 
Sbjct: 191 ALATGMRRSELLSMKWDDLDLDLRLVCLTRKDCAAQGMQRSERLVPLSPQAVELLAQYPK 250

Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMA 309
            ++     +     +       F      AG+N    H +R  + +     G  A ++ A
Sbjct: 251 EQQHIIGLSSGSARHG------FDRARKAAGLNQLRFHDLRHIAISKMWAEGMNALQISA 304

Query: 310 TYGWKTVDQAETYTKGA 326
             G K +     Y+   
Sbjct: 305 ISGHKDLRMLMRYSHYQ 321


>gi|300776492|ref|ZP_07086350.1| mobilizable transposon [Chryseobacterium gleum ATCC 35910]
 gi|300502002|gb|EFK33142.1| mobilizable transposon [Chryseobacterium gleum ATCC 35910]
          Length = 429

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 43/274 (15%), Positives = 89/274 (32%), Gaps = 22/274 (8%)

Query: 88  AVNSRISFESYFDQIIRKSGD-FDYRKITTKHIRSGVESRKHTP-----------SSAIQ 135
           + + R ++    + II  SGD   + KI               P           +SA  
Sbjct: 149 SDSIRTNWRCLIEFIIEFSGDDLRFSKIDLSFADDFKLYLLSAPYRGKKKGILSNNSAAT 208

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195
           + +  + +   A    Y  I+    ++    +       + E++    +   E  + + A
Sbjct: 209 YFSIFKAIVSQAFIDGYFIIDLSAKIKGIGEQESFREHLSLEELNLLVNTPCENDELKRA 268

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251
             F   +GLR  D  R   + +           + +KT  +    + +  + L     + 
Sbjct: 269 SLFSALTGLRHCDIKRLKWKEIDVQSNRIKIQFRQKKTKGVEYTPISEQAIHLCGTPRLP 328

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMA 309
           ++  F N       +     W K     AG+ K  + H  R   AT+    G   + +  
Sbjct: 329 EQLVFENLQDSSWISRPLEKWVK----SAGITKHITFHCFRHTFATLQLSLGTDIYTVSK 384

Query: 310 TYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343
             G   V   + Y K  D ++     + ++   +
Sbjct: 385 MLGHSKVTTTQVYAKVVDELKNRAAGAIKLDENI 418


>gi|32474798|ref|NP_867792.1| integrase/recombinase Y4QK [Rhodopirellula baltica SH 1]
 gi|32445338|emb|CAD75339.1| putative integrase/recombinase Y4QK [Rhodopirellula baltica SH 1]
          Length = 461

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 40/259 (15%), Positives = 90/259 (34%), Gaps = 16/259 (6%)

Query: 88  AVNSRISFES-YFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKW 146
           AV++  ++ S +   +    G     +I  + IR  +E      +SA +   ++  L   
Sbjct: 81  AVSTIKNYRSAWVCFLRWYRG--PLDQIDQEDIREYLELLVAGGASASEVSVTLSALRTG 138

Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRC 206
             +   +     + +  P++  +     +K+++Q+     +   + +L    L  +GLR 
Sbjct: 139 LDKFCLLRC--TVGLVSPRKSKQLPVVMSKKEVQRMME-AARTLRDKLLLTVLYATGLRV 195

Query: 207 SDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMT---PIGKETFFINNDK 261
           ++  R              ++  K      V L D  + L+        G    F +  +
Sbjct: 196 AEVARLQWSDFDFDRQQIRVQLGKGKKDRYVMLADDLLPLMRQLWRHTKGVGYLFPSEGR 255

Query: 262 Q---KMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTV 316
           +    ++        K     +G+ K  + H  R   AT   ++G     +    G   +
Sbjct: 256 RVDRHLSPRTIQRAVKQARILSGIGKAVTPHSFRHSFATHLIESGTDIRFIQKLLGHTNL 315

Query: 317 DQAETYTKGADRIRLGIKN 335
           +    YTK A      + +
Sbjct: 316 ETTSLYTKVARMKATAVAS 334


>gi|307293564|ref|ZP_07573408.1| integrase family protein [Sphingobium chlorophenolicum L-1]
 gi|306879715|gb|EFN10932.1| integrase family protein [Sphingobium chlorophenolicum L-1]
          Length = 378

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 63/347 (18%), Positives = 105/347 (30%), Gaps = 26/347 (7%)

Query: 1   MTPSLRLPPF-VTKERTRHGKIIYYFRKG-HGRRIRLPYPHESTFIPAYMSA------LT 52
           + P  +L    +T ER+++G  +Y       G RI      ES  +    +        T
Sbjct: 16  LAPGKKLAEHGITVERSQNGDAVYRINIMVDGERIHRVVGRESDGVTRQHAEDMIATLRT 75

Query: 53  GSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDY 111
            +  +R  +   RK     K     Y K          +    E   +  +    G    
Sbjct: 76  RAREERLDLPKGRKIAIPFKEAAESYIK--RLKEEGGKTIERKERTLELYLTPALGTKPL 133

Query: 112 RKITTKH---IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168
            KIT+      R+         ++  + +  +  L+  AV   +VA  P   + R K   
Sbjct: 134 SKITSSDLAVYRAQRLKAGAKDATINREMAVVSHLYSKAVDWGWVAAKP--KIIRAKEGD 191

Query: 169 EGIRPWTKEDMQQF--KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN--IFSI 224
             I   T +   +    +               L + +R S+      +HL  +     I
Sbjct: 192 GRIAYLTPDQCARIIAAARNDLSPHIHPFCVIALSTSMRMSEVLSIKPEHLDFDKRRIFI 251

Query: 225 KTQKTGT---IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281
            + K G     +T  L D     L   P   E  F N+  +           +     AG
Sbjct: 252 PSAKAGQREQPMTKGLSDFLKAQLESLPDDAEWLFPNSASKSGRVMTIRKAHRRVVKAAG 311

Query: 282 VNKSA---HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           +N      H  R  + T    AG     +    G KT+     Y   
Sbjct: 312 LNPDEVLRHTFRHTAITHLVQAGVDLPTVQKVSGHKTLAMVARYAHA 358


>gi|257898705|ref|ZP_05678358.1| integrase-recombinase [Enterococcus faecium Com15]
 gi|257836617|gb|EEV61691.1| integrase-recombinase [Enterococcus faecium Com15]
          Length = 313

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 37/289 (12%), Positives = 87/289 (30%), Gaps = 46/289 (15%)

Query: 85  GSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVESRKHTPSSA----IQFLT 138
             ++  +    + +        K     + +  T          K     A       L 
Sbjct: 8   RGISQKTIKKHQKFLKLFFEFLKKEQIYFIEDVTPKSIRQFMLMKLEEGCAETYVNSHLR 67

Query: 139 SMRVLFKWAVRQEYV--AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-------- 188
           S+R  FK+ V ++Y+    NPC+ V+  K +   I+ +   ++++  +   +        
Sbjct: 68  SIRAYFKYCVDEDYIRYDRNPCMRVKWVKERKVIIQTFNDMEIKEMLNVAKKLTFFKPQK 127

Query: 189 -------------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
                          +  L    L+ +GLR ++       H+ N    ++  K      V
Sbjct: 128 MDKQHTGYQTKFTNQRDYLLLLILVDTGLRINEVMNLKDFHITNKELFVENGKGKKDRIV 187

Query: 236 ELPDG-FMKLLAMTPIG------------KETFFINNDKQKMNA---TQFSIWFKAKAT- 278
                 + + +    +                 F+  + ++ N     +  I    +   
Sbjct: 188 HCSPLIYKEYIKYKRVANSFFEYNEIENIDNYVFLTREGKQYNYILAERAIIKIGNQCKI 247

Query: 279 KAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           +  +  S H  R + A      G   + +    G  ++   E Y +  +
Sbjct: 248 RKSIRVSPHSFRHYFAQKLVRNGTDIYRIQKLLGHASIKTTEVYLRSLN 296


>gi|253771281|ref|YP_003034141.1| putative integrase/recombinase [Clostridium botulinum D str. 1873]
 gi|253721433|gb|ACT33725.1| putative integrase/recombinase [Clostridium botulinum D str. 1873]
          Length = 272

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 35/265 (13%), Positives = 85/265 (32%), Gaps = 21/265 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGV-ESRKHTPSSAIQFLTSMR 141
              +  +  ++++   + I        +   I  +  +  + E+   +P +  + + ++R
Sbjct: 15  KDKSKKTIYTYKNDIKRFIEYFEKNKLEINTINMRKFKDYLLEALLLSPKTVNRNIIAIR 74

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGI--RPWTKEDMQQFKSFWS--EGSQPRLAFE 197
                    EY+ IN  + ++  K + +G      T +++ +           + +    
Sbjct: 75  QFL------EYIHIN-NIDIKMIKIQEQGFLEDTLTNDEVIRMIKETEKMHDLRAKAFIC 127

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL---LAMTPIGKET 254
            L Y+G+R S++     + +  +   I   K G    + +P     +     +       
Sbjct: 128 TLYYTGMRVSEAISLLSEDINKDSIRI-LGKGGKYRDILIPKKLKNIWKDYMIVRENNSD 186

Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGVNKSA---HGVRKFSATISADAGATAHELMATY 311
                 +  ++        K     A + K     H  R        D G     +    
Sbjct: 187 KLFTGREGGISRFTALNIVKKYGHMAKIKKDKVYNHAFRHLYCLNLVDRGIPLDAIKDLA 246

Query: 312 GWKTVDQAETYTKGADRIRLGIKNS 336
           G K +     YT+ + +  L I N 
Sbjct: 247 GHKNISTTIIYTRKSKKQLLDIINQ 271


>gi|218442682|ref|YP_002381002.1| integrase [Cyanothece sp. PCC 7424]
 gi|218175040|gb|ACK73772.1| integrase domain protein SAM domain protein [Cyanothece sp. PCC
           7424]
          Length = 319

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 44/289 (15%), Positives = 91/289 (31%), Gaps = 29/289 (10%)

Query: 83  HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH---IRSGVESRKHTPSSAIQFLTS 139
              SL+ NS+ ++     + I    +    +IT +     +  ++      SS  + L +
Sbjct: 37  RARSLSSNSQKAYRRELKRFI-NWSNKPLNQITPRQIVQYKEYLQGESLAASSINRALCA 95

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR----LA 195
           ++  F W + + Y   NP +SV   K  +      + ++++  +    +  +       A
Sbjct: 96  VKSFFAW-LEETYQTQNPTVSVALNKLPSLPAFDLSDKEIEALQLVLPQRPEVMRKRDAA 154

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM-------- 247
              +L  GLR  +     +         ++  K  +  TV L       +          
Sbjct: 155 IIAVLRHGLRACEVVALNLGDYDGVRVHVRVGKDDSGGTVPLDATARAAINAYLQQRREK 214

Query: 248 --TPIGKETFFINND---KQK--MNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISAD 299
                     F ++     +   +         K   + AG+ N + H +R   AT    
Sbjct: 215 GEKFSATAPMFASHSPVPGKPTRLGYQGLYYLIKELGSNAGIENLTPHRLRHTFATNLLL 274

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
            G  +         K+    + Y K A    L     R     +  + P
Sbjct: 275 KGMDSLHARTLTRHKSEVSFKRYAKRA----LSAAAERAFYEAIGEEPP 319


>gi|254192266|ref|ZP_04898755.1| phage integrase [Burkholderia pseudomallei Pasteur 52237]
 gi|157987461|gb|EDO95237.1| phage integrase [Burkholderia pseudomallei Pasteur 52237]
          Length = 411

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 59/385 (15%), Positives = 120/385 (31%), Gaps = 66/385 (17%)

Query: 1   MTPSLRLPPFVTKERTRHG---KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGST-- 55
           M    RLP  +       G   ++ +Y+R    R      P        Y   L G    
Sbjct: 1   MERKPRLPTGIEVRTGARGASLRVRFYYRGEECRETLKMEPTPKN--IQYADRLRGEILR 58

Query: 56  -------------PKREYINSPRKKPTT-------LKWLISEYRKSAHWGSLAVNSRISF 95
                        P+ +   +PR    +       L   +++ RK+     ++ ++   +
Sbjct: 59  KIEMGTFNYGEYFPESKRAATPRAASPSEVTVGERLDDFMTQARKAVAKTRMSPSTLEGY 118

Query: 96  ESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA 154
               D ++  + G      +    +R  +     T  +A   L  +  +   A+  E + 
Sbjct: 119 RKVVDGRLRPRWGAVRLVDVRPADLRKWISDLDVTLKTARNILGPLGSVLADALNDELID 178

Query: 155 INPCLSVERPKRKTEGIRP-------WTKEDMQQFKSFWSE---GSQPRLAFEFLLYSGL 204
            NP   ++  K  ++  RP       ++ ++++   +   E   G   R  F+F  +SG+
Sbjct: 179 ENPLTKIDVRKLLSKTTRPSDYEVDPFSIDEIRAILAAADELYPGGAARNLFQFAFWSGM 238

Query: 205 RCSDSCRAGVQHLQNNIFSIKTQ-------------KTGTIITVELPDGFMKLLAMTPIG 251
           R S+       H+  N   ++ +             K G    + LP     L A   + 
Sbjct: 239 RTSELIALDWLHVDLNAGVVRVRNAQVVGTMKTTKTKAGLRDVLLLPSARAALEAQREVT 298

Query: 252 KET-----FFINNDKQKMNATQFSIWFKAKA-----TKAGVNKS-AHGVRKFSATISADA 300
           +       F +    +  +        +         KA V     +  R   A++    
Sbjct: 299 RGMEHNRVFVVPWHGRPWSGD---KQIRVNCWTYVLKKAEVRYRNPYQTRHTFASMLLSR 355

Query: 301 GATAHELMATYGWKTVDQ-AETYTK 324
           G     +    G    +   +TY K
Sbjct: 356 GENPLWVAQQMGHVDTEMITKTYGK 380


>gi|182437392|ref|YP_001825111.1| putative phage integrase [Streptomyces griseus subsp. griseus NBRC
           13350]
 gi|178465908|dbj|BAG20428.1| putative phage integrase [Streptomyces griseus subsp. griseus NBRC
           13350]
          Length = 423

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 55/394 (13%), Positives = 110/394 (27%), Gaps = 73/394 (18%)

Query: 24  YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAH 83
           Y  +  G R R  + +  T      S LT                      ++ +  +  
Sbjct: 25  YVFRPDGTRTR-KFAYGKT-REEVASQLTEMQEMTRQGIPAASSTMAFGDYLTYWLATIA 82

Query: 84  WGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE------------------ 124
              L   +  S+E      I    G     +++   +R  +                   
Sbjct: 83  PERLKPATLNSYEGLSRLYIRPALGKKRLNRLSPADVRRFLAEFKAACLCCLRGADEERP 142

Query: 125 -------------SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
                         R+ +  +       +R   + A+R+E +A N    VE P  + + +
Sbjct: 143 EDKRTCCAVGRCCKRRPSARTVQYIHAVLRSALQQAIREELIARNVARIVETPTVEPKEV 202

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
           RP    +++             L    L+ +GLR  ++       +     +++ ++   
Sbjct: 203 RPLDAAEVRLLLKTARPHRLYALWL-LLVSTGLRRGEALGLTWADVDLTAGTLRVRRNVQ 261

Query: 232 II----------------TVELPDGFMKLLAMTPIGKE-------------------TFF 256
            I                T+ LP   ++ L      +E                     F
Sbjct: 262 RIRRELIFGTPKTMRSVRTISLPKSCVQALTAHRTQQEREQKVAGAKWQQTPGQPAGLVF 321

Query: 257 INNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKT 315
                +  +    +         A V +   H +R   A++    G  A  +M T G  T
Sbjct: 322 TTLTGRVTDPRSLNRMLTILCRDAKVRRVRVHDLRHTCASLLLAQGVDARTIMETLGHST 381

Query: 316 VDQA-ETYTKGA-DRIRLGIKNSRRISSVVDSDD 347
           +    +TY       +R   +       + D DD
Sbjct: 382 ITMTLDTYAHVMGSTLRAAAEQMDDALGLEDVDD 415


>gi|289167066|ref|YP_003445333.1| site-specific recombinase, phage integrase family [Streptococcus
           mitis B6]
 gi|288906631|emb|CBJ21465.1| site-specific recombinase, phage integrase family [Streptococcus
           mitis B6]
          Length = 377

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 40/276 (14%), Positives = 94/276 (34%), Gaps = 41/276 (14%)

Query: 90  NSR-ISFESYFDQ---IIRKSGDFDYRKI--TTKHIRSGVESRKHTP---SSAIQFLTSM 140
           N++  ++  +      ++   G   Y  I    +H+R  V      P   ++  + +  +
Sbjct: 85  NTQDNNYNKHIKDYFSMVDNVGKLTYEDIYQFREHLRQKVAKNSDKPLSTNTINKIMILL 144

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-SEGSQPRLAFEFL 199
           + +F   +R+ Y + NP   +++   +   ++ WT ++ Q+F + +  E    +L F  L
Sbjct: 145 KKIFDVGLRKGYYSSNPAKLIKKLPIEKTKMQFWTVKEFQKFLTLFEPEEYNIKLLFTVL 204

Query: 200 LYSGLRCSDSCRAGVQHLQ---------------NNIFSIKTQKTGTII-TVELPDGFMK 243
            ++GLR  ++     Q +                  +  I T KT      + +     +
Sbjct: 205 FFTGLRLGEALALTWQDIDFSSNTIHITKSVYVNKGVTHISTTKTKAGTRRIVINKKLSQ 264

Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSI------------WFKAKATKAG-VNK-SAHGV 289
            L      ++          +    F               +K    +   + K   H  
Sbjct: 265 ELQDWEKQQKHLLEQFTNNSLTLQVFQNSPITITKNAVEKQYKKILERDSTLKKIRIHDF 324

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
           R   A++  + G     +    G  ++    +TY+ 
Sbjct: 325 RHSHASLLINQGEDYLVVKERLGHASITTTIDTYSH 360


>gi|2668483|dbj|BAA23767.1| integrase [Pseudomonas aeruginosa]
          Length = 337

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 42/306 (13%), Positives = 92/306 (30%), Gaps = 62/306 (20%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129
           ++ + R+   +   ++ +  ++       IR  G      + +  + + +      RK +
Sbjct: 16  VLDQLRERIRYLHYSLRTEQAYVHCVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75

Query: 130 PSSAIQFLTSMRVLFK--WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            S+  Q L ++   +         ++       + RP+         T +++ +   F  
Sbjct: 76  VSTHRQALAALLFFYGKVLCTDLPWLQ-----EIGRPRPSRRLPVVLTPDEVVRILGFL- 129

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQH--LQNNIFSIKTQKTGTIITVELPDGFMKLL 245
           EG   RL  + L  +G+R S+  +  V+     +    ++  K      + LP+     L
Sbjct: 130 EGEH-RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSL 188

Query: 246 AMTPIGKETFFINN---------------------------------------------D 260
                    +++ +                                              
Sbjct: 189 REQLSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVR 248

Query: 261 KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           +  M    F   FK    +AG+ K  + H +R   AT    +G     +    G   V  
Sbjct: 249 RHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVST 308

Query: 319 AETYTK 324
              YT 
Sbjct: 309 TMIYTH 314


>gi|314950814|ref|ZP_07853885.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133A]
 gi|313596990|gb|EFR75835.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133A]
          Length = 371

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 43/303 (14%), Positives = 99/303 (32%), Gaps = 49/303 (16%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESR--- 126
           L + + EY K     +L  N+  ++     + I    G      ++   +++ + +    
Sbjct: 61  LDFWMEEYVK----LNLKYNTYENYRFTIKNHINGYLGKKKLTDLSPALLQNFINAEFKK 116

Query: 127 ---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK-----TEGIRPWTKED 178
              K T +     L +   +  +      +  NP L V+ PK +      + ++  + ED
Sbjct: 117 GYSKKTMTITHSVLKNALNMAVY--PWGLIKQNPMLYVKIPKYEARPTTKKDLKIISLED 174

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK---------- 228
                    EG    +      Y+G+R  + C      +  +  +I  +K          
Sbjct: 175 FDHMLEITPEGHPFYIPLNIGFYTGMRVGEVCGLTWDDVDFSNGTITVEKQMVKNDGAWV 234

Query: 229 ------TGTIITVELPDGFMKLLAMTP--------------IGKETFFINNDKQKMNATQ 268
                 + +  T+ +    + +L                  I         D + +  + 
Sbjct: 235 YGTPKTSSSNRTIFIGQTLLAILKKHKKQQLENRMKYGKLYIDSNAVCTKEDGELVTPSV 294

Query: 269 FSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGAD 327
                +  +    ++ + H +R   AT+  + GA   E+    G   +    +TY+   D
Sbjct: 295 VKWNTRRISNALSLSFNFHSLRHTHATLLLENGAKMKEISERLGHSRISITMDTYSHVTD 354

Query: 328 RIR 330
           ++R
Sbjct: 355 KMR 357


>gi|314939813|ref|ZP_07847031.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133a04]
 gi|314941456|ref|ZP_07848346.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133C]
 gi|314949549|ref|ZP_07852882.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0082]
 gi|314992246|ref|ZP_07857685.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133B]
 gi|314995374|ref|ZP_07860479.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133a01]
 gi|313590420|gb|EFR69265.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133a01]
 gi|313593214|gb|EFR72059.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133B]
 gi|313599741|gb|EFR78584.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133C]
 gi|313640909|gb|EFS05489.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133a04]
 gi|313644077|gb|EFS08657.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0082]
          Length = 372

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 43/303 (14%), Positives = 99/303 (32%), Gaps = 49/303 (16%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESR--- 126
           L + + EY K     +L  N+  ++     + I    G      ++   +++ + +    
Sbjct: 62  LDFWMEEYVK----LNLKYNTYENYRFTIKNHINGYLGKKKLTDLSPALLQNFINAEFKK 117

Query: 127 ---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK-----TEGIRPWTKED 178
              K T +     L +   +  +      +  NP L V+ PK +      + ++  + ED
Sbjct: 118 GYSKKTMTITHSVLKNALNMAVY--PWGLIKQNPMLYVKIPKYEARPTTKKDLKIISLED 175

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK---------- 228
                    EG    +      Y+G+R  + C      +  +  +I  +K          
Sbjct: 176 FDHMLEITPEGHPFYIPLNIGFYTGMRVGEVCGLTWDDVDFSNGTITVEKQMVKNDGAWV 235

Query: 229 ------TGTIITVELPDGFMKLLAMTP--------------IGKETFFINNDKQKMNATQ 268
                 + +  T+ +    + +L                  I         D + +  + 
Sbjct: 236 YGTPKTSSSNRTIFIGQTLLAILKKHKKQQLENRMKYGKLYIDSNAVCTKEDGELVTPSV 295

Query: 269 FSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGAD 327
                +  +    ++ + H +R   AT+  + GA   E+    G   +    +TY+   D
Sbjct: 296 VKWNTRRISNALSLSFNFHSLRHTHATLLLENGAKMKEISERLGHSRISITMDTYSHVTD 355

Query: 328 RIR 330
           ++R
Sbjct: 356 KMR 358


>gi|258616081|ref|ZP_05713851.1| phage integrase family site specific recombinase [Enterococcus
           faecium DO]
 gi|293563861|ref|ZP_06678293.1| phage integrase family protein [Enterococcus faecium E1162]
 gi|294623266|ref|ZP_06702131.1| phage integrase family protein [Enterococcus faecium U0317]
 gi|291597294|gb|EFF28480.1| phage integrase family protein [Enterococcus faecium U0317]
 gi|291604190|gb|EFF33692.1| phage integrase family protein [Enterococcus faecium E1162]
          Length = 361

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 43/303 (14%), Positives = 99/303 (32%), Gaps = 49/303 (16%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESR--- 126
           L + + EY K     +L  N+  ++     + I    G      ++   +++ + +    
Sbjct: 51  LDFWMEEYVK----LNLKYNTYENYRFTIKNHINGYLGKKKLTDLSPALLQNFINAEFKK 106

Query: 127 ---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK-----TEGIRPWTKED 178
              K T +     L +   +  +      +  NP L V+ PK +      + ++  + ED
Sbjct: 107 GYSKKTMTITHSVLKNALNMAVY--PWGLIKQNPMLYVKIPKYEARPTTKKDLKIISLED 164

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK---------- 228
                    EG    +      Y+G+R  + C      +  +  +I  +K          
Sbjct: 165 FDHMLEITPEGHPFYIPLNIGFYTGMRVGEVCGLTWDDVDFSNGTITVEKQMVKNDGAWV 224

Query: 229 ------TGTIITVELPDGFMKLLAMTP--------------IGKETFFINNDKQKMNATQ 268
                 + +  T+ +    + +L                  I         D + +  + 
Sbjct: 225 YGTPKTSSSNRTIFIGQTLLAILKKHKKQQLENRMKYGKLYIDSNAVCTKEDGELVTPSV 284

Query: 269 FSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGAD 327
                +  +    ++ + H +R   AT+  + GA   E+    G   +    +TY+   D
Sbjct: 285 VKWNTRRISNALSLSFNFHSLRHTHATLLLENGAKMKEISERLGHSRISITMDTYSHVTD 344

Query: 328 RIR 330
           ++R
Sbjct: 345 KMR 347


>gi|257878400|ref|ZP_05658053.1| phage integrase [Enterococcus faecium 1,230,933]
 gi|257882818|ref|ZP_05662471.1| phage integrase [Enterococcus faecium 1,231,502]
 gi|257889401|ref|ZP_05669054.1| phage integrase [Enterococcus faecium 1,231,410]
 gi|257894414|ref|ZP_05674067.1| phage integrase [Enterococcus faecium 1,231,408]
 gi|257812628|gb|EEV41386.1| phage integrase [Enterococcus faecium 1,230,933]
 gi|257818476|gb|EEV45804.1| phage integrase [Enterococcus faecium 1,231,502]
 gi|257825761|gb|EEV52387.1| phage integrase [Enterococcus faecium 1,231,410]
 gi|257830793|gb|EEV57400.1| phage integrase [Enterococcus faecium 1,231,408]
          Length = 351

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 43/303 (14%), Positives = 99/303 (32%), Gaps = 49/303 (16%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESR--- 126
           L + + EY K     +L  N+  ++     + I    G      ++   +++ + +    
Sbjct: 41  LDFWMEEYVK----LNLKYNTYENYRFTIKNHINGYLGKKKLTDLSPALLQNFINAEFKK 96

Query: 127 ---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK-----TEGIRPWTKED 178
              K T +     L +   +  +      +  NP L V+ PK +      + ++  + ED
Sbjct: 97  GYSKKTMTITHSVLKNALNMAVY--PWGLIKQNPMLYVKIPKYEARPTTKKDLKIISLED 154

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK---------- 228
                    EG    +      Y+G+R  + C      +  +  +I  +K          
Sbjct: 155 FDHMLEITPEGHPFYIPLNIGFYTGMRVGEVCGLTWDDVDFSNGTITVEKQMVKNDGAWV 214

Query: 229 ------TGTIITVELPDGFMKLLAMTP--------------IGKETFFINNDKQKMNATQ 268
                 + +  T+ +    + +L                  I         D + +  + 
Sbjct: 215 YGTPKTSSSNRTIFIGQTLLAILKKHKKQQLENRMKYGKLYIDSNAVCTKEDGELVTPSV 274

Query: 269 FSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGAD 327
                +  +    ++ + H +R   AT+  + GA   E+    G   +    +TY+   D
Sbjct: 275 VKWNTRRISNALSLSFNFHSLRHTHATLLLENGAKMKEISERLGHSRISITMDTYSHVTD 334

Query: 328 RIR 330
           ++R
Sbjct: 335 KMR 337


>gi|254469282|ref|ZP_05082687.1| phage integrase [Pseudovibrio sp. JE062]
 gi|211961117|gb|EEA96312.1| phage integrase [Pseudovibrio sp. JE062]
          Length = 416

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 58/356 (16%), Positives = 112/356 (31%), Gaps = 48/356 (13%)

Query: 10  FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
           F+ + RT  G+     R   GR   L            ++ +           + R  P 
Sbjct: 41  FIVQYRTHEGRSR---RMSLGRYGELTPDQARDLATNVLATVRNGDDPLLKRENKRAAP- 96

Query: 70  TLKWLISEYR-KSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRK 127
           T+  L+  Y  K     +    +    E    + +  + G      +  + I     S +
Sbjct: 97  TVNVLLDIYMSKHVQVHN-KPKTMKDIERLLKRCVRSRLGLMKLNSVRRQDIAKLHHSLR 155

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
            TP  A Q L  +   F  A          NP   V+R K + E  R  ++E++Q+    
Sbjct: 156 ATPRQANQVLAVLSKAFNLAEVWGLRPEHSNPVRLVKRYK-ENERDRFLSEEELQRLGRT 214

Query: 186 WSEGSQPRLAFEF-------------------------------LLYSGLRCSDSCRAGV 214
                Q  L +                                 LLY+G R S+      
Sbjct: 215 LELADQEGLPWIIKAGKRSAKHLPKDVAKRKTPVNPRALCCLRLLLYTGARLSEIATLKW 274

Query: 215 QHLQNNI--FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFF----INNDKQKMNATQ 268
           +H+   +  F++ ++K        +    +++L+  P    + +      +  Q ++   
Sbjct: 275 KHIDFELATFALPSRKGDERKPHPVSSSAIEILSEFPRVDGSPYVLPGCKDPTQPISIEV 334

Query: 269 FSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
               ++     A + +   H +R    T +A AG+ A  +      + V     Y 
Sbjct: 335 IENAWQRIRIHANIPDVRIHDLRHTVGTFAAQAGSNAFLISHLLRHRNVTITNRYV 390


>gi|163742251|ref|ZP_02149639.1| site-specific tyrosine recombinase XerC [Phaeobacter gallaeciensis
           2.10]
 gi|161384581|gb|EDQ08962.1| site-specific tyrosine recombinase XerC [Phaeobacter gallaeciensis
           2.10]
          Length = 311

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 40/236 (16%), Positives = 78/236 (33%), Gaps = 19/236 (8%)

Query: 107 GDFDYRKITTKHIRSGVESRKHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVER 163
           G     +I+T  +R+ + + + T + A    + L++++  + W   ++       LS   
Sbjct: 58  GLGALAEISTGDMRAWMAATRATGTGARSLARKLSAVKSFYTWLAERQGFEPTAVLSARS 117

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWS-------EGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216
           PK + +  RP  ++  +                ++       L   GLR S++       
Sbjct: 118 PKFQKKLPRPLAEDAARAVIETVEFQSTTDWVAARDVAVVTLLYGCGLRISEALGLTGAD 177

Query: 217 LQNNIFSIKTQKTGTIITVELP-------DGFMKLLAMTPIGKETFFINNDKQKMNATQF 269
                    T K G    V +        D +++L           F       +NA   
Sbjct: 178 APLPAVLRITGKGGKERIVPVLSAARAAVDRYLRLCPHPQERAAPLFRGVRGGALNARLI 237

Query: 270 SIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
                    + G+  SA  H +R   AT   +AG     +    G  ++   + YT
Sbjct: 238 RSAMAQARAQLGLPASATPHALRHSFATHLLEAGGDLRAIQELLGHASLSTTQAYT 293


>gi|153838484|ref|ZP_01991151.1| integrase [Vibrio parahaemolyticus AQ3810]
 gi|149748107|gb|EDM58966.1| integrase [Vibrio parahaemolyticus AQ3810]
          Length = 392

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 36/207 (17%), Positives = 65/207 (31%), Gaps = 17/207 (8%)

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199
           +R     A R+  +  NP   V   K KT      T +++             + AF F 
Sbjct: 175 VRAAINEAHREGIIRDNPLSQVTSIKAKTTKRVYLTLDEVNALAHTECRYPVLKRAFLFS 234

Query: 200 LYSGLRCSDSCRAGVQHLQN----NIFSIKTQK-----TGTIITVELPDGFMKLLAMTPI 250
             +G+R  D  R     ++             K       ++  +++P     LL     
Sbjct: 235 CATGMRWCDIHRLTWSEVETFNNHKRIIFDQAKLSQGDAKSLQYLDIPKSAESLLGSPKA 294

Query: 251 GKETFFINNDKQKMNATQFSIW-FKAKATKAGVNK--SAHGVRKFSATISADAGATAHEL 307
             E  F     + +  + +        A  AG++K  + H  R   A I    G   + +
Sbjct: 295 SHERVF-----KGLKYSSYINVELLRWALAAGISKHVTFHAGRHTFAVIQLSRGIDIYAV 349

Query: 308 MATYGWKTVDQAETYTKGADRIRLGIK 334
               G   +   E Y    ++ R+   
Sbjct: 350 SKLLGHSELKTTEIYADIIEQRRMEAM 376


>gi|69246683|ref|ZP_00604073.1| Phage integrase [Enterococcus faecium DO]
 gi|68195157|gb|EAN09615.1| Phage integrase [Enterococcus faecium DO]
          Length = 375

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 43/303 (14%), Positives = 99/303 (32%), Gaps = 49/303 (16%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESR--- 126
           L + + EY K     +L  N+  ++     + I    G      ++   +++ + +    
Sbjct: 65  LDFWMEEYVK----LNLKYNTYENYRFTIKNHINGYLGKKKLTDLSPALLQNFINAEFKK 120

Query: 127 ---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK-----TEGIRPWTKED 178
              K T +     L +   +  +      +  NP L V+ PK +      + ++  + ED
Sbjct: 121 GYSKKTMTITHSVLKNALNMAVY--PWGLIKQNPMLYVKIPKYEARPTTKKDLKIISLED 178

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK---------- 228
                    EG    +      Y+G+R  + C      +  +  +I  +K          
Sbjct: 179 FDHMLEITPEGHPFYIPLNIGFYTGMRVGEVCGLTWDDVDFSNGTITVEKQMVKNDGAWV 238

Query: 229 ------TGTIITVELPDGFMKLLAMTP--------------IGKETFFINNDKQKMNATQ 268
                 + +  T+ +    + +L                  I         D + +  + 
Sbjct: 239 YGTPKTSSSNRTIFIGQTLLAILKKHKKQQLENRMKYGKLYIDSNAVCTKEDGELVTPSV 298

Query: 269 FSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGAD 327
                +  +    ++ + H +R   AT+  + GA   E+    G   +    +TY+   D
Sbjct: 299 VKWNTRRISNALSLSFNFHSLRHTHATLLLENGAKMKEISERLGHSRISITMDTYSHVTD 358

Query: 328 RIR 330
           ++R
Sbjct: 359 KMR 361


>gi|318603813|emb|CBY25311.1| integrase [Yersinia enterocolitica subsp. palearctica Y11]
          Length = 284

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 41/273 (15%), Positives = 88/273 (32%), Gaps = 17/273 (6%)

Query: 56  PKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT 115
             ++  +  R     L  L+  +    H  +L   +    + +  + +   GD    ++T
Sbjct: 4   ANKKEWSDKRLDRRLLSDLVETWWL-YHGQNLKNGTIE--KRHLMKTLTALGDKAVSQLT 60

Query: 116 TKHI---RSGVESRKHTPSSAIQFLTSMRVLFKWAVR-QEYVAINPCLSVERPKRKTEGI 171
            + +   RS   +   + ++  + L  +  +F   ++ +E+   NP   +     K  G+
Sbjct: 61  KRELMEHRSQRLADGISAATINRDLYRLSGMFSALIKIEEFSGQNPLHGLPPLAEKNPGM 120

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
                E++ +  +  S     RL     L +G R  +        + NN  +    K G 
Sbjct: 121 TFLDAEEINRLLAVLS--GDERLIALLCLSTGGRWGEVSTLTAAQVVNNRVTFLETKNGK 178

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRK 291
             T+ +     K +      K   F  +  +      F    +         ++ H +R 
Sbjct: 179 KRTIPISAELEKEVKTNASRK--LFKVDYGK------FCETLRMVKPDLPRGQATHVLRH 230

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK 324
             A+     G     L    G   + Q   Y  
Sbjct: 231 TFASHFMMNGGNIIALQQILGHANIQQTMAYAH 263


>gi|51596109|ref|YP_070300.1| integrase [Yersinia pseudotuberculosis IP 32953]
 gi|51589391|emb|CAH21013.1| putative integrase [Yersinia pseudotuberculosis IP 32953]
          Length = 351

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 46/329 (13%), Positives = 91/329 (27%), Gaps = 32/329 (9%)

Query: 18  HGKII--YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75
           +GK +  +Y      +R+R  +      +      L                   LK L+
Sbjct: 8   NGKWVCDFYSDGRDSKRVRKTFVTRGEAMRFEREQLAQRGDLDIDYTPAETAAQRLKTLV 67

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-----KHTP 130
            ++         +++   +     + +    GD        +      + R        P
Sbjct: 68  GQWY---ELHGRSLSDGKARLDKLNILCDNLGDPAVADFDREVFAKYRKQRLAGEFSRKP 124

Query: 131 ----------SSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDM 179
                     ++  +    +R +F    R   +   NP   V   +     +    ++D+
Sbjct: 125 KHGIVKPPKEATVNREHAYLRAVFNELKRLGHWNHANPLDGVRLFRESENELTFLYEDDI 184

Query: 180 QQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237
           ++        S   L       L +G R S++ +     +  N  +    K+    TV +
Sbjct: 185 KRLLHECDSSSNKDLGIIVRICLATGARWSEAEQLRQAQVMPNKITYINTKSKKNRTVPI 244

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATIS 297
                KL+   P  K   F N          F              +  H +R   A+  
Sbjct: 245 SAELHKLI---PKMKGRLFANAY------DAFGQAIDRAKLVLPTGQLTHVLRHTFASHF 295

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGA 326
              G     L    G  T+     Y+  A
Sbjct: 296 MMNGGNILVLQQILGHSTIQMTMRYSHFA 324


>gi|327402450|ref|YP_004343288.1| integrase family protein [Fluviicola taffensis DSM 16823]
 gi|327317958|gb|AEA42450.1| integrase family protein [Fluviicola taffensis DSM 16823]
          Length = 404

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 46/291 (15%), Positives = 106/291 (36%), Gaps = 43/291 (14%)

Query: 79  RKSAHWGSLAVNSRISF------------ESYFDQIIRKSGDFDYRKITTKHIRSG---- 122
           +KS  +   A +   S+            +   +++ +      +  IT K + +     
Sbjct: 103 KKSMDFFEFANSVTESYLTDSKIGTYSKTKGIIEKLKKYDSSLSFIDITPKFLTAYEAYL 162

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPWTKEDMQ 180
                ++ ++    L  +R +F  A +Q+ +    +P L  +  K +       T+++++
Sbjct: 163 RTKLNNSTNTIHTNLKFIRTVFNKAFQQDIIELSSSPFLKFKM-KTEKVQRDYLTEDELK 221

Query: 181 QFKSFWSEG-----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
            F    ++G         +        GLR SD  +    H  ++  +   +KTG+ I++
Sbjct: 222 IFAEVDTQGNLKLELHQDMFVFAAYSGGLRISDILQLQWIHFDDSHINFTIKKTGSQISI 281

Query: 236 ELPDGFMKLLAM---TPIGK----------ETFFINNDKQKMNATQFSIWF----KAKAT 278
           ++P+  + ++     T   K          +T+  +   Q    +  +       K  A 
Sbjct: 282 KIPNIALNIIEKYNLTQSEKTSYIFPMLPEDTYLRDAIGQDKAISSATAVINKNLKTLAK 341

Query: 279 KAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
            A + K  S H  R   AT +   G +  ++    G   + + + Y K  +
Sbjct: 342 LAKIEKNISFHISRHTWATRALRKGMSIDKVSKLMGHSAIKETQIYAKIVN 392


>gi|301059533|ref|ZP_07200445.1| site-specific recombinase, phage integrase family [delta
           proteobacterium NaphS2]
 gi|300446298|gb|EFK10151.1| site-specific recombinase, phage integrase family [delta
           proteobacterium NaphS2]
          Length = 340

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 53/297 (17%), Positives = 97/297 (32%), Gaps = 31/297 (10%)

Query: 50  ALTGSTPKREYINSPR------KKPTT--LKWLISEYRKSAHWGSLAVNSRISFESYFDQ 101
           AL     +R  +N+P       ++P +  L+  I +Y        +  N+          
Sbjct: 34  ALLAEAERRTQVNAPSLGLKELEEPPSDYLEETILKYLNYCKKRKMRTNTIRQKYFVLSN 93

Query: 102 IIRKSGDFDYRKITTKHIRSGVESRKHTPSSA-IQFLTSMRVLFKWAVRQEYVAINPCLS 160
            ++  GD     I    I + +E R  +  S   + L  +R +F W   +E +  NP   
Sbjct: 94  FVKSIGDKPVELIRKSDIEAYLELRIDSGKSTFNRDLRDIRAMFNWYYGREGIFHNPAND 153

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF-EFLLYSGLRCSDSCRAGVQ-HLQ 218
           +E+     E        D++  K      ++  + F E + Y+GLR  ++ R      + 
Sbjct: 154 IEKIGEDVELRYVPPFSDIKAVK---LVATRDEVDFLETIFYAGLRRIEAIRLLWSRDVD 210

Query: 219 NN----IFSIKTQKTGTIITVE------LPDGFMKLLAMTPIGKETFFINNDKQKMNATQ 268
                 I   + +K GT+          L               +  F      + +   
Sbjct: 211 FGSRTLISWTRKRKNGTLTPKPKAMTKILYMALKNRYERRNRLDDRVF------QFSVEY 264

Query: 269 FSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            +   K    KAGV     H +R   A+I          +    G + +    TY  
Sbjct: 265 LNDMMKCLCEKAGVQHFGLHALRHLGASILLSENVPLPAVQEYLGHERITTTNTYAH 321


>gi|157159384|ref|YP_001462867.1| phage integrase family site specific recombinase [Escherichia coli
           E24377A]
 gi|157081414|gb|ABV21122.1| site-specific recombinase, phage integrase family [Escherichia coli
           E24377A]
          Length = 426

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 45/317 (14%), Positives = 97/317 (30%), Gaps = 64/317 (20%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK-ITTKHIRSGVESR-- 126
           T+K L  ++        +A  S  ++ +    I+   G+ +    I  + +    +    
Sbjct: 80  TIKELAEKFLALKE-TEVAKTSLNTYRAVIKNILSIIGEKNLASSINKEKLLEVRKELLT 138

Query: 127 --------------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
                           +  +   ++T++  +F++ V   Y+A NP   +   K       
Sbjct: 139 GYQIPKSNYIVTQPGRSAVTVNNYMTNLNAVFQFGVDNGYLADNPFKGISPLKESRTIPD 198

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK----- 225
           P ++E+  +         Q +  +   +Y+G+R  + C  G + +   N    I+     
Sbjct: 199 PLSREEFIRLIDAC-RNQQAKNLWCVSVYTGVRPGELCALGWEDIDLKNGTMMIRRNLAK 257

Query: 226 --------TQKTGTIITV--ELPDGFMKLLAMTPIGKETFF------------------- 256
                      T  +I +     D     + +T + KE                      
Sbjct: 258 DRFTVPKTQAGTNRVIHLIKPAIDALRSQMTLTRLSKEHIIDVHLREYGRTEKQKCTFVF 317

Query: 257 -------INNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELM 308
                  + N             + A   +AG+ ++ ++  R   A  S  AGA    + 
Sbjct: 318 QPEVSARVKNYGDHFTVDSIRQMWDAAIKRAGLRHRKSYQSRHTYACWSLTAGANPAFIA 377

Query: 309 ATYGWKTVDQA-ETYTK 324
              G        + Y K
Sbjct: 378 NQMGHADAQMVFKVYGK 394


>gi|160935791|ref|ZP_02083166.1| hypothetical protein CLOBOL_00681 [Clostridium bolteae ATCC
           BAA-613]
 gi|158441535|gb|EDP19245.1| hypothetical protein CLOBOL_00681 [Clostridium bolteae ATCC
           BAA-613]
          Length = 392

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 53/357 (14%), Positives = 104/357 (29%), Gaps = 61/357 (17%)

Query: 24  YFRKGHGRRIRLPYPHESTFIPAYMSALTGST----PKREYINSPRKKPTT------LKW 73
             R      +RL    +S     Y S    ++     K + I + +KK  T       + 
Sbjct: 14  RQRSDGRYEVRLYTGTDSNGKKTYKSIYGRTSKELKEKLKEIATEQKKNRTPAANINFRD 73

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS-- 131
               + +   +  L   S    E  ++++    G      I+T  I+  +     T +  
Sbjct: 74  YALHWMRLYKYPVLKPVSYDRLEQTYNKVCEYLGWIQMGNISTDDIQEMINDLARTKAYS 133

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK-----RKTEGIRPWTKEDMQQFKSFW 186
           +  +    ++ +F  A +   +  NPC +V  P       KT+      +E+ +   +F 
Sbjct: 134 TVKKHHEFVKNVFSHAYKTGELDFNPCEAVALPIERNMTVKTKPAEILLEEETEAMYAFN 193

Query: 187 SEGSQPR-------LAFEFLLYSGLRCSDSCRAGVQHLQ-------------------NN 220
            +  + R        A   +L +G R  +        +                    + 
Sbjct: 194 EKIKKSRNQFFKQMPALLLMLNTGWRVGELLALEWTDIDFKKRTARINKTLAKAKTRNDA 253

Query: 221 IFSIKTQKT----------GTIIT------VELPDGFMKLLAMTPIGKETFFINNDKQKM 264
             SI   KT          G  +T      V L     +      I         D   +
Sbjct: 254 GESISRHKTTFPEPTKTKAGERLTPLNDMAVSLLKQIKEYNQRMGIQSNYVVCTKDGGYV 313

Query: 265 NATQFSIWFKAK--ATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
           +       FK+      A  + + H +R   A+     G     +    G   ++  
Sbjct: 314 SERNLLRTFKSVMGIIGAEKDYTIHSLRHTYASRLLKRGVDVSVVSKLLGHSDINTT 370


>gi|85713711|ref|ZP_01044701.1| phage integrase [Nitrobacter sp. Nb-311A]
 gi|85699615|gb|EAQ37482.1| phage integrase [Nitrobacter sp. Nb-311A]
          Length = 322

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 44/307 (14%), Positives = 95/307 (30%), Gaps = 34/307 (11%)

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD-------- 108
            E +  P    + +   I+ +         L+  +  ++     Q +   G         
Sbjct: 6   AEPLPDPACAASDVGQQIARWLTHLRAERRLSAKTLEAYARDVRQCLMFLGQHWGELVTL 65

Query: 109 FDYRKITTKHIRSGVESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165
             +  +    IR+ + +R+       S ++ L  +R   ++  R+    +    ++  PK
Sbjct: 66  ERFAALEPGDIRAFMAARRAEDIGGRSLMRSLAGLRSFARFLEREGLGKVGALGAIRAPK 125

Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPR---------LAFEFLLYSGLRCSDSCRAGVQH 216
                 +P      ++F        + R              L  SGLR S++     + 
Sbjct: 126 VGKSLPKPIQMSAAKRFADASERAGEDREPWIWARDAAVMALLYGSGLRISEALGLKRRD 185

Query: 217 L----QNNIFSIKTQKTGTIITVELPDGFM---KLLAMTP---IGKETFFINNDKQKMNA 266
           +      ++  +  +   T +   L +      + +AM P         F+      + A
Sbjct: 186 VPLPGAGDVLVVTGKGNKTRMVPVLHNVLALIHEYVAMCPHSLSPDGPIFVGARGGPLRA 245

Query: 267 TQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
               +         G+    + H +R   AT     G     +    G  ++   + YT 
Sbjct: 246 RIIQLVMARMRGALGLPDSATPHALRHSFATHLLSRGGDLRAIQELLGHASLSTTQIYT- 304

Query: 325 GADRIRL 331
           G D  RL
Sbjct: 305 GIDSERL 311


>gi|331697265|ref|YP_004333504.1| integrase family protein [Pseudonocardia dioxanivorans CB1190]
 gi|326951954|gb|AEA25651.1| integrase family protein [Pseudonocardia dioxanivorans CB1190]
          Length = 573

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 47/302 (15%), Positives = 95/302 (31%), Gaps = 26/302 (8%)

Query: 52  TGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY 111
                + E+   P    TT++  + +   +   G++        E               
Sbjct: 163 RADVRELEWARVPTAIATTMRDYLQQITTTLRPGTVKNAELTLREFALLVTAEDPETRCV 222

Query: 112 RKITTKHIRSGVESRKHTPSS---------AIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162
             +  KHI          P++             L+ +R  F+     +     P   + 
Sbjct: 223 ANLRRKHIERYKTWLLERPAARGGPLHRHTVRDRLSKLRGFFRRLDEWDTEDR-PARQLV 281

Query: 163 RPKRKTEGIRPWTKEDMQQFKSFWSEGSQ------PRLAFEFLLYSGLRCSDSCRAGVQH 216
                     P  +       +     ++       RLA E L  +G+R S+     +  
Sbjct: 282 FDSDFPIADEPLPRFLDDAAAAKLLAAARNDPDPFARLAIEILARTGMRRSEMLGLTIDA 341

Query: 217 L----QNNIFSIKTQKTGTIITVELPDGFMKL----LAMTPIG-KETFFINNDKQKMNAT 267
           +          +   K  T   V L      L    LA  P G +      +  + +NA+
Sbjct: 342 VVQIGSAYWLRVPVGKMHTDRYVPLHPQLKALIDDWLARRPEGLRSDLLFTDHGRPVNAS 401

Query: 268 QFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           +     +  A +AG+ + + H +R   AT + + G +   + A  G +++     Y + A
Sbjct: 402 RIEAAVRNAADRAGLGRVTPHQLRHTLATQAINRGMSLEAIAALLGHRSLSMTRVYARIA 461

Query: 327 DR 328
           +R
Sbjct: 462 NR 463


>gi|260361955|ref|ZP_05774960.1| phage integrase family protein [Vibrio parahaemolyticus K5030]
 gi|308114176|gb|EFO51716.1| phage integrase family protein [Vibrio parahaemolyticus K5030]
          Length = 394

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 69/220 (31%), Gaps = 17/220 (7%)

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             + ++   +   +R     A R+  +  NP   V   K KT      T +++       
Sbjct: 164 ALSRNTQSSYFNKVRAAINEAHREGIIRDNPLAQVTSIKAKTTKRVYLTLDEVNALAHTE 223

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN----NIFSIKTQK-----TGTIITVEL 237
                 + AF F   +G+R  D  R     ++             K       ++  +++
Sbjct: 224 CRYPVLKSAFLFSCATGMRWCDIHRLTWSEIETFNNHKRIIFDQVKLSHGDAKSLQYLDI 283

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW-FKAKATKAGVNK--SAHGVRKFSA 294
           P     LL       E  F     + +  + +        A  AG++K  + H  R   A
Sbjct: 284 PKSAESLLGSPKASHERVF-----KGLKYSSYINVELLRWALAAGISKHVTFHAGRHTFA 338

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIK 334
            I    G   + +    G   +   E Y    ++ R+   
Sbjct: 339 VIQLSRGIDIYAVSKLLGHSELKTTEIYADIIEQRRMEAM 378


>gi|237710496|ref|ZP_04540977.1| integrase [Bacteroides sp. 9_1_42FAA]
 gi|229455218|gb|EEO60939.1| integrase [Bacteroides sp. 9_1_42FAA]
          Length = 406

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 44/267 (16%), Positives = 93/267 (34%), Gaps = 28/267 (10%)

Query: 78  YRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVESRKHTPSSA 133
           + KSA        +++ +  +    +       D++ +T    +     +  + +  ++ 
Sbjct: 111 FAKSAIDNSDKKQSTKDNLHTTLAVLHDFRSGLDFKDLTYTFLRDFEQYLREKGNAVNTI 170

Query: 134 IQFLTSMRVLFKWAVRQEYVAIN--PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
            + +  +R L   A+ Q Y+  +  P    +  K++         +++++ ++   E   
Sbjct: 171 AKHMRQLRTLVNEAINQGYMHADAYPFRKYK-IKQEKGRHEFLIPDELKKLETVEVEEES 229

Query: 192 PR---LAFEFLLYSGLRCSDSCRAGVQHLQN----NIFSIKTQKTGTIITVELP-----D 239
            R    AF F  Y+GLR SD C+   ++            K+ KTG  I + L       
Sbjct: 230 MRHVLDAFLFCCYTGLRYSDFCQLTPENFIRINGKRWLYFKSVKTGVEIRLPLHLLFESR 289

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATIS 297
               L     IG               ++ +   +  A   G+ K    H  R   AT+ 
Sbjct: 290 ALGSLDRYPDIGSLAALP-------CNSEVNRQLRKLAGLCGIKKRITYHVSRHTCATLL 342

Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324
              G     +    G  +V   + Y++
Sbjct: 343 IHQGVAITTVQKLLGHTSVKTTQIYSE 369


>gi|227461186|gb|ACP39540.1| putative integron integrase [uncultured microorganism]
          Length = 318

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 43/304 (14%), Positives = 94/304 (30%), Gaps = 58/304 (19%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           L+ + R+       +V +  ++  +  + I  +G    R +  + + + +       + A
Sbjct: 19  LLEQVRQRLRVKHYSVRTEQAYVGWIRRFILANGKRHPRDMGEREVEAFLTVLATKGNVA 78

Query: 134 ----IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
                Q L+++  L++   + E        +V R KR        ++E++ +  +     
Sbjct: 79  AGTQNQALSALLFLYREVPKLELP---WMENVVRAKRPRRIPAVLSREEVTRLLAALE-- 133

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
               L    L  +G+R  +  R  ++ +        ++  K G    V LP    + L  
Sbjct: 134 GPAWLMAALLYGTGMRLMECIRLRIKDVDFDRGEIVVRNGKGGKDRRVPLPLRLRESLRA 193

Query: 248 TP----------------------------------IGKETFFIN-----------NDKQ 262
                                                G +  F +             + 
Sbjct: 194 AIEHACLLHASDLADGLGEAWLPHALARKYPNAARETGWQYVFPSPQRSVDPRSGKTRRH 253

Query: 263 KMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
            ++ +      ++    A ++K A  H +R   AT   +AG     +    G K V    
Sbjct: 254 HVDDSVLQRAVRSARKLAMIDKPATCHTLRHSFATHLLEAGHDIRTVQELLGHKDVATTM 313

Query: 321 TYTK 324
            YT 
Sbjct: 314 IYTH 317


>gi|169830694|ref|YP_001716676.1| phage integrase family protein [Candidatus Desulforudis audaxviator
           MP104C]
 gi|169637538|gb|ACA59044.1| phage integrase family protein [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 390

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 47/295 (15%), Positives = 97/295 (32%), Gaps = 29/295 (9%)

Query: 70  TLKWLISEYRKSAH-WGSLAVNSRISFE---SYFDQIIRKSGDFDYRKITTK---HIRSG 122
           T +  I  Y +       +A  +  ++      F + +   G  + R+ITT        G
Sbjct: 2   TFEEAIEAYFEVGVVLRGMAAGTVEAYRCDFRDFSRFLESQGVGEVREITTAVVNTYLVG 61

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP-KRKTEGIRPWTKEDMQQ 181
           +  R  + S+  +   ++  L  + V+Q +V  NP   V    K +T      +   ++ 
Sbjct: 62  LRKRGLSLSTVHRRKNALSSLLGFCVQQGWVDNNPLRKVILQTKPRTVRNVVLSDMAVRT 121

Query: 182 FKS-----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-------QKT 229
           F          +G         L+++GLRCS+   A   H+  N   +         +K 
Sbjct: 122 FLQSDVTYRSVDGLTVTAIKMLLVFTGLRCSEIVSADWAHVNLNSGLLTVFNSKNTARKG 181

Query: 230 ---GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---- 282
              G    + L    ++ L   P  +          ++            +  + +    
Sbjct: 182 LPEGKDRDIPLCQTVIQALNALPYRQGPLLQTRGGLRLGVDALREIVARLSQASRLEYDH 241

Query: 283 -NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIRLGIKN 335
              + H  R   A+     G +  ++    G K     + Y     +R+R  ++ 
Sbjct: 242 RPLTPHCFRHNLASQLVSRGYSEADVATLLGHKPGTVTQAYIHSTIERLREAVQG 296


>gi|322378156|ref|ZP_08052641.1| prophage L54a, integrase [Streptococcus sp. M334]
 gi|321280886|gb|EFX57901.1| prophage L54a, integrase [Streptococcus sp. M334]
          Length = 379

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 59/359 (16%), Positives = 125/359 (34%), Gaps = 47/359 (13%)

Query: 18  HGKIIYY-----FRKGHGRRIRLPYPHES--TFIPAYMSALTGSTPKREYINSPRK--KP 68
           +GK  YY       +   +++ +    ++      A M        K+E I   +   K 
Sbjct: 8   NGKYRYYEKYFDLEESKWKQVSITLTSKTRQAQKQARMLLEEKIENKKENIEKEKTEVKK 67

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128
            T+K +  EY K      L  ++  S +      IRK  D+    +T++ +++ +     
Sbjct: 68  ITVKEVYEEYLKIRE-SELKRSTFKSQKYTIIGEIRKLEDYLLVNVTSRIVQNILLELPC 126

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG-------IRPWTKEDMQQ 181
           +          + + FK+ +   Y++ NP  +V  PKRK           +  T+ ++ Q
Sbjct: 127 SAEHRKNKKVLLNLFFKYCLNVGYISENPIDNVVLPKRKKNLKKVRKKQNKYLTRVEVVQ 186

Query: 182 FKSFWSE---GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK----TQKTGTI 232
           + +F  +     + RL  EF+  +GLR  +     ++ +   N    +K    T  +   
Sbjct: 187 YLNFLEKEEKNQRVRLIVEFMYLTGLRFGEVLALTLEDIDFENKTLEVKHTLHTSGSKAE 246

Query: 233 ITVELPDGFMKLLAMTPIGK--------------ETFFINNDKQKMNATQFSIWFKAKAT 278
           I ++ P        +    +                F    +        F+ + K    
Sbjct: 247 IFLDSPKSLASYRVIGISDRVLEIIEEYLLMEKEGRFIFTKNGNPFMIFSFNDFLKRSFK 306

Query: 279 KAGVNK------SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIR 330
           ++G+ K      + H  R    ++ A+       +M   G          YT   ++++
Sbjct: 307 RSGIQKEEDFVLTTHVFRHSHISLLAELEVPIKAIMERVGHTNEKMTLGVYTHVTEKMK 365


>gi|257466156|ref|ZP_05630467.1| putative integrase [Fusobacterium gonidiaformans ATCC 25563]
 gi|315917313|ref|ZP_07913553.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC
           25563]
 gi|313691188|gb|EFS28023.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC
           25563]
          Length = 329

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 37/262 (14%), Positives = 90/262 (34%), Gaps = 14/262 (5%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129
           L++ +  +      +  S   ++   ++++   G  + + I T  +RS +      ++ +
Sbjct: 54  LLNTFLSAKRVEGCSEKSLSYYQKTIERMLNSIG-KEIKYIVTDDLRSYLTEYQSEKQSS 112

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
             +       +   F W   ++Y+  +P   + + K  +     ++ E++++ +    E 
Sbjct: 113 RVTIDNIRRILSSFFSWLEDEDYILKSPVRRIHKVKTISSIKDTYSDEELERMRDSCHE- 171

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDG----FMKL 244
            +     + L  +G+R  +      Q ++      I   K      V             
Sbjct: 172 IRDLALIDILASTGMRVGELVLLNRQDIKFGERECIVFGKGDKERVVYFDARTKIHLQNY 231

Query: 245 LAMTPIGKETFFINNDKQ--KMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG 301
           L          F+   K   ++      +  +    +  +NK   H  R+  ATI+ D G
Sbjct: 232 LNTRVDSNPALFVALRKPYNRLTIGGIEVRLRKIGKELEINKVHPHKFRRTLATIAIDKG 291

Query: 302 ATAHELMATYGWKTVDQAETYT 323
               +L    G + +D    Y 
Sbjct: 292 MPIEQLQKLLGHRRIDTTLQYA 313


>gi|237708556|ref|ZP_04539037.1| transposase [Bacteroides sp. 9_1_42FAA]
 gi|229457485|gb|EEO63206.1| transposase [Bacteroides sp. 9_1_42FAA]
          Length = 320

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 43/267 (16%), Positives = 90/267 (33%), Gaps = 27/267 (10%)

Query: 85  GSLAVNSRISFESYFDQIIR------KSGDFDYRKITTKHIRSGVESRKHTP----SSAI 134
             +A  +   +E+                D    +++ + I       K       ++A 
Sbjct: 41  TDMAPATVQRYETSLKHTRDFVWETYHKKDVLLDEVSRQFIEDYEFWLKTEKKCCHNTAT 100

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQ 191
           ++L + + + + A+ + ++  +P L + R              ++Q+  S        SQ
Sbjct: 101 KYLKNFKKITRIALAKGWMKNDPFLEI-RFSLDKVEPDFLEDSEIQKLISKEIDIPRLSQ 159

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVELPDGFMKLLA 246
            R  F F  ++GL  SD      +H+  +           QKT  +  + L +  +K+L 
Sbjct: 160 VRDIFVFCCFTGLAFSDIHGLRKEHIVEDSNGVRWIRKGRQKTKIMCNIPLIEIPLKILE 219

Query: 247 MTPIGKETFFINNDK---QKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAG 301
                +   +          +   + + + K  A   G+ K+   H  R   AT +   G
Sbjct: 220 KYSTNE---YCKKHGVLFPVLCNQKMNAYLKELADICGIKKTLTTHVGRHTFATFALANG 276

Query: 302 ATAHELMATYGWKTVDQAETYTKGADR 328
            +   +    G   V     Y +  DR
Sbjct: 277 VSIESVAKMLGHTNVQMTRHYARVLDR 303


>gi|255305195|ref|ZP_05349367.1| phage integrase family protein [Clostridium difficile ATCC 43255]
          Length = 351

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 53/308 (17%), Positives = 111/308 (36%), Gaps = 40/308 (12%)

Query: 57  KREYINSPR-KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKI 114
           +RE++N  +       + L+ EY +      L + +    +   + +I+         +I
Sbjct: 46  EREFLNKSKMSTDMNFESLVDEYMQDMS-TRLKLTTIDIKKYLINLKILPFFRKLKINEI 104

Query: 115 TTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP-KRKTEG 170
           T KHIR          ++ +        +  +  +AV+   +  NP        K+  + 
Sbjct: 105 TAKHIRKWQNELLQSDYSQTYIKTINNQLVAILNYAVKYYNLPSNPAHLAGSIGKKNADE 164

Query: 171 IRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI------ 224
           ++ WT ++ ++F  F ++  +PRLAFE L ++GLR  +      + +  N  +I      
Sbjct: 165 MQFWTLDEFKKFMEFENKP-EPRLAFEILFWAGLRLGELMALTPKDIFENKINIDKSYMK 223

Query: 225 ----------KTQKTGTIITVE------LPDGFMKLLAMTPIGKETFFINNDKQKMNATQ 268
                     KT K+  I+ +       + D   KL  +     E  F      K   + 
Sbjct: 224 LNGEDIVSSPKTPKSKRIVPIPSFLYNNIKDYLSKLYDLK--EDERIF------KFAKSY 275

Query: 269 FSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGA 326
                      +G+ +   H +R   A++  +       +    G +  +    TY+   
Sbjct: 276 LHKELDRCCKLSGIKRIRVHDLRHSHASLLVNMDVNILTIAERLGHEKAETTWNTYSHLY 335

Query: 327 DRIRLGIK 334
              +L + 
Sbjct: 336 PNKQLEVA 343


>gi|198274804|ref|ZP_03207336.1| hypothetical protein BACPLE_00963 [Bacteroides plebeius DSM 17135]
 gi|198276070|ref|ZP_03208601.1| hypothetical protein BACPLE_02255 [Bacteroides plebeius DSM 17135]
 gi|198270882|gb|EDY95152.1| hypothetical protein BACPLE_02255 [Bacteroides plebeius DSM 17135]
 gi|198272251|gb|EDY96520.1| hypothetical protein BACPLE_00963 [Bacteroides plebeius DSM 17135]
          Length = 372

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 55/265 (20%), Positives = 97/265 (36%), Gaps = 26/265 (9%)

Query: 84  WGSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRSGVE-----------SRKHTPS 131
           +  LA    I ++  +    R  +G   + ++     R  +E           S+K   +
Sbjct: 100 FKGLADRKNIKWQHVYKHFERFVNGKCTFEEVDVDLCRKFMEYLLNAPQSIHTSQKLHIN 159

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           SA  + ++ R +   A R   +  NP   ++R +         ++E++ +      E   
Sbjct: 160 SAAGYWSAFRAVLHTAYRDRKIKENPNGFLDRIECIPTMREHLSQEELIRLAETPCEEEV 219

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQ---NNIFSIKT--QKTGTIITVELPDGFMKLLA 246
            + AF F   +GLR SD  +   Q +Q   N    + T  QKT  I+   + D    LL 
Sbjct: 220 LKRAFLFGCLTGLRKSDIRQLTWQQIQPYTNGKMFVTTRMQKTKQIVHNPISDEAYGLLG 279

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATA 304
                 E    +  K KM         K     AG+ K  + H  R    ++  + G   
Sbjct: 280 E---RHEGLIFDGFKDKM----LQGPLKRWLLAAGITKKITFHCTRHSFGSLHVEMGTDM 332

Query: 305 HELMATYGWKTVDQAETYTKGADRI 329
             + A  G K +   + Y+K A + 
Sbjct: 333 AVIQAYLGHKNITTTQIYSKMAAQQ 357


>gi|189461279|ref|ZP_03010064.1| hypothetical protein BACCOP_01929 [Bacteroides coprocola DSM 17136]
 gi|189461291|ref|ZP_03010076.1| hypothetical protein BACCOP_01941 [Bacteroides coprocola DSM 17136]
 gi|189431991|gb|EDV00976.1| hypothetical protein BACCOP_01941 [Bacteroides coprocola DSM 17136]
 gi|189432021|gb|EDV01006.1| hypothetical protein BACCOP_01929 [Bacteroides coprocola DSM 17136]
          Length = 337

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 55/265 (20%), Positives = 97/265 (36%), Gaps = 26/265 (9%)

Query: 84  WGSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRSGVE-----------SRKHTPS 131
           +  LA    I ++  +    R  +G   + ++     R  +E           S+K   +
Sbjct: 65  FKGLADRKNIKWQHVYKHFERFVNGKCTFEEVDVDLCRKFMEYLLNAPQSIHTSQKLHIN 124

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           SA  + ++ R +   A R   +  NP   ++R +         ++E++ +      E   
Sbjct: 125 SAAGYWSAFRAVLHTAYRDRKIKENPNGFLDRIECIPTMREHLSQEELIRLAETPCEEEV 184

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQ---NNIFSIKT--QKTGTIITVELPDGFMKLLA 246
            + AF F   +GLR SD  +   Q +Q   N    + T  QKT  I+   + D    LL 
Sbjct: 185 LKRAFLFGCLTGLRKSDIRQLTWQQIQPYTNGKMFVTTRMQKTKQIVHNPISDEAYGLLG 244

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATA 304
                 E    +  K KM         K     AG+ K  + H  R    ++  + G   
Sbjct: 245 E---RHEGLIFDGFKDKM----LQGPLKRWLLAAGITKKITFHCTRHSFGSLHVEMGTDM 297

Query: 305 HELMATYGWKTVDQAETYTKGADRI 329
             + A  G K +   + Y+K A + 
Sbjct: 298 AVIQAYLGHKNITTTQIYSKMAAQQ 322


>gi|116048748|ref|YP_792452.1| putative integrase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115583969|gb|ABJ09984.1| putative integrase [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 258

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 39/234 (16%), Positives = 72/234 (30%), Gaps = 20/234 (8%)

Query: 101 QIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAI-N 156
           Q+  + GD     +      S    R     +  +    L  +R +F        +   N
Sbjct: 3   QLAARLGDPLATALDASSYASLRRKRLEEGISGKTLNNELGYLRAVFNELKDLGQIDYGN 62

Query: 157 PCLSVERPKRKTEGIRPWTKEDM----QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRA 212
           P   V+  K +   +   T E +       +S         L     L +G R S++ + 
Sbjct: 63  PLAGVKLLKLQERELSWLTTEQIGELLDSIRSRCD-NPHTELVTLLCLATGARWSEAEKL 121

Query: 213 GVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM--TPIGKETFFINNDKQKMNATQFS 270
               LQ N+ +    K+G +  V +P       +      G  T  I + ++ ++ T   
Sbjct: 122 PAHRLQGNVVTYAGTKSGKVRHVPIPPELANRASAHWRMHGPFTSCITSFRRALDRTTIQ 181

Query: 271 IWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +              +H +R   A+     G     L    G  T+     Y  
Sbjct: 182 LPQGQA---------SHALRHSFASHFMMNGGNILTLQKILGHSTLTMTMRYAH 226


>gi|52081940|ref|YP_080731.1| lambda integrase-like, N-terminal,DNA breaking-rejoining enzyme,
           catalytic core [Bacillus licheniformis ATCC 14580]
 gi|52787324|ref|YP_093153.1| YdcL [Bacillus licheniformis ATCC 14580]
 gi|52005151|gb|AAU25093.1| Lambda integrase-like, N-terminal,DNA breaking-rejoining enzyme,
           catalytic core [Bacillus licheniformis ATCC 14580]
 gi|52349826|gb|AAU42460.1| YdcL [Bacillus licheniformis ATCC 14580]
          Length = 364

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 59/341 (17%), Positives = 106/341 (31%), Gaps = 34/341 (9%)

Query: 11  VTKERTRHGKIIYYF------RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64
           V K++ R     YYF      R G  ++I+      S        A   +  + E  +  
Sbjct: 3   VYKDKERG---TYYFIISYTNRNGEYKQIKRRGFKSSG---EAKRAEAETLLRLETDDGE 56

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
            +   T +++  EY K       A +   +       +I + G      I ++ I     
Sbjct: 57  NEDNPTFEFVAKEYLKWYKKRRKASSYLKTSSIINTHLIPRFGSKKINNIRSRDIMRFQN 116

Query: 125 SRKHTPSSA--IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-PWTKEDMQQ 181
                 + A   +    +  +F +A++QEY   NP         + +     WT ++ + 
Sbjct: 117 DLLDRYAVAHVKKIHQVLSAVFNFAIKQEYTKDNPARLAGNVDIEEDKHINYWTLDEFKA 176

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ------------NNIFSIKTQKT 229
           F     +       F  L YSG+R  +        +              N    K + T
Sbjct: 177 FIQHVDDQLY-YALFMTLYYSGMRKGELLALTWGDIDFDSNTINIDKTVYNRIVTKPKTT 235

Query: 230 GTIITVELPDGFMKLLAMTPIGKET----FFINNDKQKMNATQFSIWFKAKATKAGVNK- 284
            +I  + +P   M+LLA      +T             ++ T     +      A V K 
Sbjct: 236 SSIRKIMMPKHVMRLLAQLKAKTKTKMTYVVFGEFHDHISTTTLDRKYAEYVKAAKVKKI 295

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
             H  R   A+   +       +    G K V      Y+ 
Sbjct: 296 RLHDFRHSHASYLINRNTIPSVVAKRLGHKDVGTTLNIYSH 336


>gi|194429499|ref|ZP_03062021.1| integrase [Escherichia coli B171]
 gi|194412463|gb|EDX28763.1| integrase [Escherichia coli B171]
 gi|195182858|dbj|BAG66428.1| predicted integrase [Escherichia coli O111:H-]
          Length = 312

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 49/301 (16%), Positives = 98/301 (32%), Gaps = 12/301 (3%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRK-SAHWGS 86
             G+RIR  +  +S  +      L          NS  ++P ++  LI  + K       
Sbjct: 6   RKGKRIRKKFKTKSDAVLYERWVLAQQHNNEWKGNSIDRRPLSV--LIDLWWKYHGQLMK 63

Query: 87  LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKW 146
              N+R+      + +           + T+ +R     +   PS+  + + ++  +F  
Sbjct: 64  SGHNTRLKLLRLSEAMDDPCVHKLNTTMLTE-LRVSRIEQGIQPSTINREIGALSAMFTA 122

Query: 147 AVRQEY-VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLR 205
            +   + +  NP   ++  K     +   +K +  Q     +E    RLA E LL +G R
Sbjct: 123 LISSGHFLNDNPVQGLKGMKVNEREMGYLSKSECVQLLDALAENPDERLAVEILLSTGAR 182

Query: 206 CSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN 265
             +      + + +   +    K     TV + +   +   +   G +  F   D     
Sbjct: 183 WGEVAALEQRRVLHCRITFSKTKNSKNRTVPISESLFE--KIKKRGGKLVFPTLD----- 235

Query: 266 ATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
            +      K  A      ++ H +R   A+     G     L    G   +     Y   
Sbjct: 236 YSLVRDVIKTVAPDVPDGQAVHALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIYAHL 295

Query: 326 A 326
           A
Sbjct: 296 A 296


>gi|326330366|ref|ZP_08196676.1| putative phage integrase [Nocardioidaceae bacterium Broad-1]
 gi|325951903|gb|EGD43933.1| putative phage integrase [Nocardioidaceae bacterium Broad-1]
          Length = 382

 Score = 93.6 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 55/339 (16%), Positives = 117/339 (34%), Gaps = 34/339 (10%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIP-----AYMSALTGSTPKREYINS 63
               +  T+ G++    R       R    H   F        ++   T    + +++N 
Sbjct: 6   KHTARWTTKEGEVRTKVRWRAVYVDRAGEEHVKHFDRKTEGQDWIDEQTAGLVRGDWVN- 64

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSG 122
           P     T K     +R        A ++R +FE   +  I  K GD+    I    ++  
Sbjct: 65  PELGKQTFKAYAEAWR---ARQVHAESTRTTFEIALNAHIYPKIGDWRIDSIRQADVQEL 121

Query: 123 VESRKHTPSSAIQFLT--SMRVLFKWAVRQEYVAINPCLSVERPKRKTE-GIRPWTKEDM 179
           V     T +     L    + ++ K A ++  +A +PC     P+   +  + P T + +
Sbjct: 122 VAKWSATAAPTTVHLRYGVLAIVMKAAAKERVLAGSPCEGTRLPRLDPKSALVPITTDVV 181

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ------------ 227
           ++         + +     L  +G+R  +     V  +  +  +I+              
Sbjct: 182 KELSEM--IYPRYKNLITVLAGTGMRRGEILGLTVDRVSTDFNTIRVDRQLRTTEPTWKP 239

Query: 228 -KTGTII-TVELPDGFMKLLAMTPI-----GKETFFINNDKQKMNATQFSIWFKAKATKA 280
            KT + + T+ +PD  ++ +               F N+    +  +   + +   A K 
Sbjct: 240 PKTPSSVRTMAVPDIVLEAIEDQKKTFGIHESGLIFTNSSGNPIGKSTLWMAWNTAAKKV 299

Query: 281 GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
             + + H +R + A++   AG +   L A  G K   + 
Sbjct: 300 KTDATPHDLRHYFASMHIRAGTSIKALQALLGHKNAAET 338


>gi|152985119|ref|YP_001350673.1| integrase/recombinase [Pseudomonas aeruginosa PA7]
 gi|150960277|gb|ABR82302.1| integrase/recombinase (E2 protein) [Pseudomonas aeruginosa PA7]
          Length = 337

 Score = 93.6 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 42/306 (13%), Positives = 93/306 (30%), Gaps = 62/306 (20%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129
           ++ + R+   +   ++ +  ++  +    IR  G      + +  + + +      RK +
Sbjct: 16  VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75

Query: 130 PSSAIQFLTSMRVLFK--WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            S+  Q L ++   +         ++       + RP+         T +++ +   F  
Sbjct: 76  ASTHRQALAALLFFYGKVLCADLPWLQ-----EIGRPRPSRRLPVVLTPDEVVRILGFL- 129

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
           EG   RL  + L  +G+R S+  +  V+     +    ++  K      + LP+     L
Sbjct: 130 EGEH-RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLALGL 188

Query: 246 AMTPIGKETFFINN---------------------------------------------D 260
                    +++ +                                              
Sbjct: 189 REQLARARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVR 248

Query: 261 KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           +  M    F   FK    +AG+ K  + H +R   AT    +G     +    G   V  
Sbjct: 249 RHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVST 308

Query: 319 AETYTK 324
              YT 
Sbjct: 309 TMIYTH 314


>gi|61398373|gb|AAX46051.1| integrase [Pseudomonas aeruginosa]
          Length = 337

 Score = 93.6 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 42/306 (13%), Positives = 93/306 (30%), Gaps = 62/306 (20%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129
           ++ + R+   +   ++ +  ++  +    IR  G      + +  + + +      RK +
Sbjct: 16  VLDQLRERIRYLHYSLPTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSCLANERKVS 75

Query: 130 PSSAIQFLTSMRVLFK--WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            S+  Q L ++   +         ++       + RP+         T +++ +   F  
Sbjct: 76  VSTHRQALAALLFFYGKVLCTDLPWLQ-----EIGRPRPSRRLPVVLTPDEVVRILGFL- 129

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQH--LQNNIFSIKTQKTGTIITVELPDGFMKLL 245
           EG   RL  + L  +G+R S+  +  V+     +    ++  K      + LP+     L
Sbjct: 130 EGEH-RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSL 188

Query: 246 AMTPIGKETFFINN---------------------------------------------D 260
                    +++ +                                              
Sbjct: 189 REQLSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVR 248

Query: 261 KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           +  M    F   FK    +AG+ K  + H +R   AT    +G     +    G   V  
Sbjct: 249 RHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVST 308

Query: 319 AETYTK 324
              YT 
Sbjct: 309 TMIYTH 314


>gi|32472354|ref|NP_865348.1| integrase/recombinase Y4QK [Rhodopirellula baltica SH 1]
 gi|32443590|emb|CAD73032.1| probable integrase/recombinase Y4QK [Rhodopirellula baltica SH 1]
          Length = 450

 Score = 93.6 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 45/313 (14%), Positives = 90/313 (28%), Gaps = 66/313 (21%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---- 128
             I E+R+S     LA+ +   +       +   G          H              
Sbjct: 119 DAIQEFRRSMRRAGLAIATERCYVRKLKAFMADRGLNCLADFDRIHACDVEAHLTDLAVD 178

Query: 129 ---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE--GIRPWTKEDMQQFK 183
              +PS+  Q   S+   F+  +++E         +E  +   +       + E++ Q  
Sbjct: 179 GNVSPSTQNQAFHSLLKFFELVLKREMGK------IEAIRANKDSMAPTVMSPEEVGQVF 232

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGF 241
                     +  + L   G+R S++ R  V+ +   N    I+  K      V +PD  
Sbjct: 233 EGLE--GVYLVIAKLLYGCGMRISETHRLRVKDIDFANKQIEIRQSKGNKSRLVPMPDDL 290

Query: 242 MKLLAMTPIGKETFFINN------------------------------------------ 259
           ++ L      ++    ++                                          
Sbjct: 291 IEPLRRFVKTRDALHEHDLANGTASVYLPYALDRKYPSAHRELKWQYLFASHRLSRDPRT 350

Query: 260 ---DKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWK 314
               +  + AT F    +    +AG+  + ++H  R   AT     G    ++    G  
Sbjct: 351 GRIHRHHLRATTFPTHLRRAVEQAGILKHVTSHTFRHCFATHLLWQGTDIRQIQQLLGHS 410

Query: 315 TVDQAETYTKGAD 327
            V   E YT   +
Sbjct: 411 DVKTTEIYTHVRN 423


>gi|85708225|ref|ZP_01039291.1| site-specific recombinase, phage integrase family protein
           [Erythrobacter sp. NAP1]
 gi|85689759|gb|EAQ29762.1| site-specific recombinase, phage integrase family protein
           [Erythrobacter sp. NAP1]
          Length = 392

 Score = 93.6 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 38/245 (15%), Positives = 81/245 (33%), Gaps = 21/245 (8%)

Query: 95  FESYFDQ-----IIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVR 149
             ++ +       I + G  D  +      RS        P +A + +  ++ +F  A  
Sbjct: 131 RRTHLEHAFAGKFIDEIGHADAVRWHASLTRSA------GPGAANRAMEILKAMFGKAEA 184

Query: 150 QEYVA--INPCLSVERPKRKTEGIRPWTKEDMQQF---KSFWSEGSQPRLA-FEFLLYSG 203
             Y+    NP   V+R  R  +  R  ++ +M +     +         +A    L  +G
Sbjct: 185 WGYLPEHSNPFRGVKR-NRGRKIERFLSENEMARLGYALARHRAAKPNEVAVISLLALTG 243

Query: 204 LRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK 263
            R  +        +Q     +   KTG  + V L      ++   P  +    +      
Sbjct: 244 CRRGEILNLTWGEVQGRKLKLTDSKTGPRV-VWLGKEARAVIDRLPRKRPHECVFQF-DV 301

Query: 264 MNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           +  +    +++    +AG+ +   H +R   A+++A +  T   +    G         Y
Sbjct: 302 LPVSAIEWFWRMLRVEAGIEDVRLHDLRHNFASLAARSSETLPMIGRLLGHNNSSTTARY 361

Query: 323 TKGAD 327
               D
Sbjct: 362 AHLDD 366


>gi|323484865|ref|ZP_08090221.1| phage integrase family Integrase/recombinase [Clostridium symbiosum
           WAL-14163]
 gi|323401861|gb|EGA94203.1| phage integrase family Integrase/recombinase [Clostridium symbiosum
           WAL-14163]
          Length = 279

 Score = 93.6 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 31/247 (12%), Positives = 77/247 (31%), Gaps = 21/247 (8%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWA 147
           + ++   +     + I      +  K    + +  +       +S    L S+     +A
Sbjct: 23  SRHTIEKYRRDLRKFIDFINGGEVTKERVINFKEYLVENYAL-NSVNSILASINHFMVFA 81

Query: 148 VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR-------LAFEFLL 200
               +        V++ K++ +   P  + ++ + + F    +  R       L  + + 
Sbjct: 82  ---GWQEF----RVKQLKKQRQVYCP-EERELSRQEYFELIRTAKREGKERICLIIQTIG 133

Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE--LPDGFMKLLAMTPIGKETFFIN 258
            +G+R S+     VQ +++    +  +     + +   L    M  +    I     F  
Sbjct: 134 STGIRISELPSITVQAVKDGGVQVDCKGKSRQVLMPKKLTMKLMHYIKKEKIRSGPVFRT 193

Query: 259 NDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGATAHELMATYGWKT 315
                ++ +      K    KAG+ +     H +R   A           +L    G   
Sbjct: 194 KQGNPIDRSNIWKEMKKICRKAGIKEKKVFPHNLRHLFACSFYQMEKDIAKLADLLGHSN 253

Query: 316 VDQAETY 322
           ++    Y
Sbjct: 254 INTTRIY 260


>gi|300903759|ref|ZP_07121671.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 84-1]
 gi|301306619|ref|ZP_07212679.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 124-1]
 gi|300404237|gb|EFJ87775.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 84-1]
 gi|300838125|gb|EFK65885.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 124-1]
 gi|315252958|gb|EFU32926.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 85-1]
 gi|315295607|gb|EFU54930.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 16-3]
          Length = 376

 Score = 93.6 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 37/215 (17%), Positives = 73/215 (33%), Gaps = 18/215 (8%)

Query: 121 SGVESRKHTPSSAIQF---LTSMRVLFKWA-VRQEYVAINPCLSVERPKRKTEGIRPWTK 176
           + +  R   P +       L  +  LF  A V       NP   V +PK  +   R  T 
Sbjct: 58  AEINPRTGKPITGNTVRLELALLSSLFNIARVEWGTCRTNPVELVRKPKVSSGRDRRLTS 117

Query: 177 EDMQQFKSFWSE-GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTGTII 233
            + ++   ++ E      + F   L + +R  +      +H+     +  +   K G   
Sbjct: 118 SEERRLSRYFREKNLMLYVIFHLALETAMRQGEILALRWEHIDLRHGVAHLPETKNGHSR 177

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKM--NATQFSIWFKAKATKAGV-NKSAHGVR 290
            V L       L M P       +N         A+ F   ++    +  + +   H +R
Sbjct: 178 DVPLSRRARNFLQMMP-------VNLHGNVFDYTASGFKNAWRIATQRLRIEDLHFHDLR 230

Query: 291 KFSATISADAG-ATAHELMATYGWKTVDQAETYTK 324
             + +   + G     E+ A  G ++++  + YT 
Sbjct: 231 HEAISRFFELGSLNVMEIAAISGHRSMNMLKRYTH 265


>gi|256843101|ref|ZP_05548589.1| integrase [Lactobacillus crispatus 125-2-CHN]
 gi|256614521|gb|EEU19722.1| integrase [Lactobacillus crispatus 125-2-CHN]
          Length = 407

 Score = 93.6 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 50/349 (14%), Positives = 113/349 (32%), Gaps = 53/349 (15%)

Query: 48  MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG 107
              L     KR           T + L  +Y  S     LA  +    ++   +I R+ G
Sbjct: 44  QLLLDEKIRKRLIDLQTGNTDITFEQLTDKYI-SVAKQQLAHTTWYRKKTTLQKINREWG 102

Query: 108 DFDY-RKITTKHIRSGVESRK-HTPS-----SAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
                + IT++ I   ++S     P      +   + + +  +F   +R  Y++ NP   
Sbjct: 103 TKIIAKNITSQFINKYLDSLLYDNPRHYSNGTVNSYKSCISGVFDLGIRYGYISKNPVNQ 162

Query: 161 VE-------RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCR 211
           V+       + + +    +    ++  +  ++  + ++  L   F +L  +G+RC ++  
Sbjct: 163 VKITWKSQSKKRHEEIENKYLEDDEYAKILAYCDKHNRQDLKDLFIWLYNTGMRCGEAIA 222

Query: 212 AGVQHL------------QNNIFSIKTQKT--------------GTIITVELPDGFMKLL 245
              +++            +  +  IK +K                    V LP    K+ 
Sbjct: 223 LQKKNILQDKDGNYFARVEGTLIFIKGEKKLSERYRKTKNAKTFSGDRDVYLPPEAKKIA 282

Query: 246 ---AMTPIGKETFFINNDKQK--MNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISA 298
                     +  F +        + +      K  A K  ++K+   H  R    +  A
Sbjct: 283 LDHCKGKKANDYIFTSKWYHNNYFSISSIDRMLKTIAKKEEIHKNLVTHIFRHTHVSKLA 342

Query: 299 DAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGIKNSRRISSVVDSD 346
           + G   + +    G       +  Y    ++++       R+ +  DS 
Sbjct: 343 EQGWPLNVIQHRVGHSNSTITQKIYLHITNKVK--NTAIERLKNFPDSQ 389


>gi|134045984|ref|YP_001097470.1| phage integrase family protein [Methanococcus maripaludis C5]
 gi|132663609|gb|ABO35255.1| phage integrase family protein [Methanococcus maripaludis C5]
          Length = 275

 Score = 93.6 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 39/265 (14%), Positives = 87/265 (32%), Gaps = 22/265 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD-FDYRKITTKHIRSGVESRKHTPS 131
           L+  Y K   +   L+  + ++++S     +    D   +  +T + I    E  + + +
Sbjct: 8   LVERYLK---FCSGLSETTLVNYKSTMKIFLNYYDDSLSFENLTIEDIIEFFEVYEASRN 64

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLS-VERPKRKTEGIRPWTKEDMQ-QFKSFWSEG 189
           + I  + S+   ++WA + +Y+  NP  S +   K   +     T++      +S     
Sbjct: 65  TKIYRIRSLNRFYEWANKHKYITGNPVRSFLNTLKPDKKERDYLTQKQSDDLLRSIIDVN 124

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVE----LPDGFMK 243
                 F   + +G+R S+     +  +        I+  K      V     +     +
Sbjct: 125 FYIFTMF--FIKTGVRVSEFQNILLDDVDFNEQTIFIRGGKGRKDRFVFFDLDMGINLKR 182

Query: 244 LLA---MTPIGKETFFINNDKQKMNATQFSIWF----KAKATKAGVNKSAHGVRKFSATI 296
            L    +        F+N   + +  +  + +          K     + H +R   AT 
Sbjct: 183 WLRERDILKPKAPNLFLNRRGKAIGKSSITHYINYLNDVYGKKVNKRITPHILRHTFATT 242

Query: 297 SADAGATAHELMATYGWKTVDQAET 321
             D G     L    G + +     
Sbjct: 243 CVDKGMDLRTLQDILGHEDIKTTSI 267


>gi|110679359|ref|YP_682366.1| site-specific tyrosine recombinase XerC [Roseobacter denitrificans
           OCh 114]
 gi|109455475|gb|ABG31680.1| tyrosine recombinase XerC [Roseobacter denitrificans OCh 114]
          Length = 306

 Score = 93.6 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 39/244 (15%), Positives = 74/244 (30%), Gaps = 20/244 (8%)

Query: 107 GDFDYRKITTKHIRSGVESRKHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVER 163
           G      ++   +R+ +   + T  +A    + L++++  +KW   +E       LS   
Sbjct: 53  GLGALADVSVTDMRAWMAQTRETGVAARSLARKLSAVKAFYKWLALREGFEPTAVLSTRA 112

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGS-------QPRLAFEFLLYSGLRCSDSCRAGVQH 216
           PK + +  RP   +  +         S       +       L   GLR S++       
Sbjct: 113 PKFQKKLPRPLAPDAARNLIDAIEIQSQHPWVCARDVAVVTLLWGCGLRISEALSLTAAD 172

Query: 217 LQNNIFSIKTQKTGTIITVELPDGFMKLLAM-------TPIGKETFFINNDKQKMNATQF 269
                    + K G    V +       +                 F       +     
Sbjct: 173 APLPATLRISGKGGKERIVPVLPAARDAVDAYVRMCPHPQTADAPLFRAVRGGPLRPGAI 232

Query: 270 SIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
                A   + G+  +A  H +R   AT   +AG     +    G  ++   + YT   D
Sbjct: 233 QKVMAAARMQLGLPATATPHAMRHSFATHLLNAGGDLRAIQELLGHASLSTTQAYT-AVD 291

Query: 328 RIRL 331
            +RL
Sbjct: 292 TVRL 295


>gi|82703133|ref|YP_412699.1| Phage integrase [Nitrosospira multiformis ATCC 25196]
 gi|82411198|gb|ABB75307.1| Phage integrase [Nitrosospira multiformis ATCC 25196]
          Length = 329

 Score = 93.6 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 47/275 (17%), Positives = 98/275 (35%), Gaps = 34/275 (12%)

Query: 88  AVNSRISFESYFDQIIRKSG---DFDYRKITTKHI---RSGVESRKHTPSSAIQFLTSMR 141
           ++ +R ++++     +  +G     D+R IT  H+   R  +E  +   ++  + L ++ 
Sbjct: 44  SLQTRRAYQNDLRGFMAFAGIVSPEDFRLITRSHVLAWRKRLEEEQLGGATIRRKLAALS 103

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKT-EGIRPW-----TKEDMQQFKSFWSEGSQPRLA 195
            LF++      V  NP   V+RP  ++ +G  P       +  ++   +   +G + R  
Sbjct: 104 SLFEYLCEANAVTHNPVKGVKRPPVESWQGKTPALGDVQARALLEAPNAKTLKGKRDRAI 163

Query: 196 FEFLLYSGLRCSDSCRAGVQHL---QNNIFSIK-TQKTGTIITVELPD-------GFMKL 244
              LLY G+R  +  R  V+     +  +  ++   K G +  +            +++ 
Sbjct: 164 LSALLYHGIRREELARLKVKDYNQSRRGVPHLRIKGKGGKMRFIPTHPGTLTLIEEYLEA 223

Query: 245 LAMTPIGKETFF----INNDKQKMNATQ----FSIWFKAKATKAGV---NKSAHGVRKFS 293
                      F     N     + A      +         K G+   N   H +R  +
Sbjct: 224 AGHGHDPDAPLFRPVKNNVHGHTLTALTPDSIYFEVVLKYLRKLGIFGENMGPHVMRATA 283

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           AT + D GA   ++    G   +     Y     R
Sbjct: 284 ATNALDNGADIAKVQEWLGHANIATTRIYDHRKTR 318


>gi|320653467|gb|EFX21572.1| putative integrase [Escherichia coli O55:H7 str. 3256-97 TW 07815]
 gi|320659167|gb|EFX26756.1| putative integrase [Escherichia coli O55:H7 str. USDA 5905]
          Length = 230

 Score = 93.2 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 37/216 (17%), Positives = 69/216 (31%), Gaps = 19/216 (8%)

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
              SA    +++  +F+ A+ + +VA NP  +    K +    R    E +  + +    
Sbjct: 10  KAVSARVIRSTLVDVFRGAIAEGHVATNPVTTTRAAKSEVRRSRLTANEYVAIYHAAEHL 69

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP---------- 238
               RL+ +  + +G R  D CR     + +    I   KTG  I + L           
Sbjct: 70  PIWLRLSMDLAVVTGQRVGDLCRMKWSDINDGHLHIGQSKTGAKIAIPLALTIDALDISL 129

Query: 239 -DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NKSAHGVRKF 292
            D   K         ET   +   + ++    S +       +G+       + H +R  
Sbjct: 130 VDTLQK--CREASSSETIIASTYHEPLSPATVSRYLTKARNASGISFDGDPPTFHELR-S 186

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
            +                 G K+   A  Y    +R
Sbjct: 187 LSARLYRNQIGYKFAQRLLGHKSDSMAAHYRDSRER 222


>gi|317480558|ref|ZP_07939648.1| phage integrase [Bacteroides sp. 4_1_36]
 gi|316903287|gb|EFV25151.1| phage integrase [Bacteroides sp. 4_1_36]
          Length = 377

 Score = 93.2 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 51/276 (18%), Positives = 97/276 (35%), Gaps = 24/276 (8%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
           +  L+ EY++      L + +  +    F++    +   D  K         ++S   TP
Sbjct: 99  IGLLMEEYKQREQPAHLHLRASRTK---FEKFRPGTRLCDINKRFCTDYAEWLQSEPLTP 155

Query: 131 -------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSV---ERPKRKTEGIRPWTKEDMQ 180
                  ++A      + ++   A ++ Y+  NP   +   E+  R        T ++++
Sbjct: 156 QGKPLAQATACSCFWILGIILSAAWQKGYIKNNPWKLLSAKEKIARPESKREFLTLDEVR 215

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVE 236
           + +         R AF F  Y GLR  D        +  N      S+  QK    I++ 
Sbjct: 216 KLEDTPYIKENIRRAFLFTCYCGLRVGDVTDLCWSDISVNGGQHFVSVVMQKNSKPISLP 275

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAH-GV-RKFSA 294
           LP   +  L      + + F        + T  +   +  A  AG+++  H  + R    
Sbjct: 276 LPAKALSWLPERGEPEASVFSL-----PSHTVLNKHLRKWAELAGLDRHLHFHLSRHTYG 330

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
           T+   AG   +      G   V   + Y K  DR +
Sbjct: 331 TMLITAGVDLYTASKMMGHADVRPTQVYAKIVDRKK 366


>gi|257869303|ref|ZP_05648956.1| phage integrase [Enterococcus gallinarum EG2]
 gi|257803467|gb|EEV32289.1| phage integrase [Enterococcus gallinarum EG2]
          Length = 324

 Score = 93.2 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 45/293 (15%), Positives = 95/293 (32%), Gaps = 44/293 (15%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRSGVESRK- 127
           ++      + ++     L  N++ ++ +  ++ I+ + G +    I    ++  +     
Sbjct: 2   SVANYFDYWFENYVEKKLKYNTQKNYLNIINKYIKPEIGKYYLSSIGPSRLQDLMNKLPN 61

Query: 128 --HTP---SSAIQFLTSMRVLFKWAV-RQEYVAINPCLSVE------RPKRKTEGIRPWT 175
               P    S    LT ++  FK AV   + +  NP + VE      +PK+  + ++  T
Sbjct: 62  GFDRPLAKHSVEIVLTVLKGAFKRAVYPWQAINSNPMVYVEMPAFENKPKQTRDDMKIIT 121

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK------TQKT 229
            +  Q+   F    S  RL      ++GLR  + C      +  +  +I         K 
Sbjct: 122 MDQYQKILEFNPPSSPFRLPLMIGFHTGLRRGEVCGLQWSDISLDERTITVDRIMLQDKH 181

Query: 230 GTII----------TVELPDGFMKLLAMTPIG-------------KETFFINND-KQKMN 265
           G  +          T+ + D     L                     TF    D  + + 
Sbjct: 182 GIQLGTPKTQASFRTIAIDDVLAAELRRARKSQSENKLRYGKFYYDSTFVCTKDNGEPVT 241

Query: 266 ATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
                        + G++ + H +R   AT+  + G     +    G   +  
Sbjct: 242 PNSIKWHSSRIKKELGIDFNFHSLRHTHATMLLEDGVKPKIVQERLGHSRIAT 294


>gi|237711030|ref|ZP_04541511.1| site-specific recombinase [Bacteroides sp. 9_1_42FAA]
 gi|229454874|gb|EEO60595.1| site-specific recombinase [Bacteroides sp. 9_1_42FAA]
          Length = 352

 Score = 93.2 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 45/287 (15%), Positives = 97/287 (33%), Gaps = 37/287 (12%)

Query: 72  KWLISEYRKSAH-WGSL-----AVNSRISFESYFDQIIR------KSGDFDYRKITTKHI 119
           K L+  +R+    + +L        + + +E     +        KS D  +R I  + +
Sbjct: 56  KMLLERFREHNEKYRALIGKDVVEATVLRYERTVRYLEEFLKKEYKSSDIPFRNIDRQFV 115

Query: 120 RSG----VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
                     +    ++ +++L  ++ +   A+  +++  NP   ++  + +T      T
Sbjct: 116 EKFEYFIKTEKNCAQNATVKYLKILKKIVTLALTNKWMTENPFTGIKFKQTQTN-RDFLT 174

Query: 176 KEDMQQFKSF---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQ 227
           +E++                R  F F   SGL  +D      +H+  +           +
Sbjct: 175 EEELHAIMEKKFDIPRLEAVRDIFVFCCLSGLAFTDVQHLKPEHITKDINGEWWIRKARE 234

Query: 228 KTGTIITVELPDGFMKLL---AMTPI--GKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
           KT  +  + L D    ++      P+   K         Q+MN+     + K  A   G+
Sbjct: 235 KTNNVCHIPLLDIPAMIIEKYRKNPVCLQKNMVLPVPSNQRMNS-----YLKEIADVCGI 289

Query: 283 NK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
            K  + H  R   A  +     +   +    G   +   + Y K  D
Sbjct: 290 TKKLTTHIARHSFACFALANKVSMETIAKMLGHSDIRTTKIYAKVLD 336


>gi|17386060|gb|AAL38574.1|AF445082_1 class I integrase [Acinetobacter baumannii]
 gi|47155069|emb|CAG26808.1| DNA integrase [Acinetobacter baumannii]
 gi|110350561|emb|CAK55555.1| integrase [Pseudomonas putida]
 gi|110350568|emb|CAK55561.1| integrase [Acinetobacter baumannii]
 gi|195977009|gb|ACG63564.1| DNA integrase [Citrobacter youngae]
          Length = 337

 Score = 93.2 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 42/306 (13%), Positives = 94/306 (30%), Gaps = 62/306 (20%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129
           ++ + R+   +   ++ +  ++ ++    IR  G      + +  + + +      RK +
Sbjct: 16  VLDQLRERIRYLHYSLPTEQAYVNWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75

Query: 130 PSSAIQFLTSMRVLFK--WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            S+  Q L ++   +         ++       + RP+         T +++ +   F  
Sbjct: 76  VSTHRQALAALLFFYGKVLCTDLPWLQ-----EIGRPRPSRRLPVVLTPDEVVRILGFL- 129

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQH--LQNNIFSIKTQKTGTIITVELPDGFMKLL 245
           EG   RL  + L  +G+R S+  +  V+     +    ++  K      + LP+     L
Sbjct: 130 EGEH-RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSL 188

Query: 246 AMTPIGKETFFINN---------------------------------------------D 260
                    +++ +                                              
Sbjct: 189 REQLSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVR 248

Query: 261 KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           +  M    F   FK    +AG+ K  + H +R   AT    +G     +    G   V  
Sbjct: 249 RHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVST 308

Query: 319 AETYTK 324
              YT 
Sbjct: 309 TMIYTH 314


>gi|260900247|ref|ZP_05908642.1| site-specific recombinase, phage integrase family [Vibrio
           parahaemolyticus AQ4037]
 gi|308107582|gb|EFO45122.1| site-specific recombinase, phage integrase family [Vibrio
           parahaemolyticus AQ4037]
          Length = 385

 Score = 93.2 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 40/268 (14%), Positives = 93/268 (34%), Gaps = 18/268 (6%)

Query: 93  ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSSAIQFLTSMRVLFKWAVRQE 151
            +F S   +++   G      +T + +   + S    + +S  ++   +  LF  AV  E
Sbjct: 117 KTFLSRSKRVMAAFGKERVTDVTRRDVERFLNSLTDLSHASINRYHAFLSKLFSMAVEHE 176

Query: 152 YVAINPCLSVERPKRKTEGIRPWTKEDMQQF--KSFWSEGSQPRLAFEFLLYSGLRCSDS 209
            +  +P   V++        R  + ++M+ F   +          A    L +G+R  + 
Sbjct: 177 IIDKSPVKGVKKRVENNAKDRVLSSKEMESFCRNACAEPNFLHASALMLSLLTGMRIGNV 236

Query: 210 CRAGVQHLQNNIFS--IKTQKTGTIITVELPDGFMKLLAM--TPIGKETFF--INNDKQK 263
                  L +++ S  +   K+G    +   +   +L+         +  F  +NN  + 
Sbjct: 237 ISLTRSMLADDLSSALLPMTKSGKSQRIYFSEPAKRLIRKCLKVSFNDWVFPSLNNRGEH 296

Query: 264 MNA-----TQFSIWFKAK-ATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVD 317
           +        +     K +    A    + H +R+  AT    A         + G   V+
Sbjct: 297 IAYPRACMERIQQAMKQEGCLDA--PFTIHDLRRTYATQMLIATNDIRLAQQSLGHSNVN 354

Query: 318 QAETYTKGADRIRLGIKNSRRISSVVDS 345
             E Y    +   L   + + + +++ +
Sbjct: 355 VTERYAYYQN-THLAQASQQTVDAMLPN 381


>gi|167758156|ref|ZP_02430283.1| hypothetical protein CLOSCI_00494 [Clostridium scindens ATCC 35704]
 gi|167664053|gb|EDS08183.1| hypothetical protein CLOSCI_00494 [Clostridium scindens ATCC 35704]
          Length = 352

 Score = 93.2 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 46/281 (16%), Positives = 94/281 (33%), Gaps = 44/281 (15%)

Query: 100 DQIIRKSGDFDYRKITTKHIRSGVESRK----------HTPSSAIQFLTSMRVLFKWAVR 149
           +  I +    D  ++    I   +E  K          +      + ++++R  + +  +
Sbjct: 69  NYSIDQFTLGDLERLEPVDIEEYMEYLKVYIRDDELVTNGEKGLSRKMSALRSFYNYYFK 128

Query: 150 QEYVAINPCLSVERPKRKTEGIRPWTKEDM----------------QQFKSFWSEGSQPR 193
           ++ ++ NP L V+ PK   + I     +++                Q    +     +  
Sbjct: 129 RQAISRNPTLLVDMPKLHDKAIIRLDADEVALLLDFVENCGNELSGQALNYYKKTKDRDL 188

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLL------ 245
                LL +G+R S+     +  +   NN  ++ T+K G  + V   +   K L      
Sbjct: 189 AILTLLLGTGIRVSECVGLDLTDVDFKNNGITV-TRKGGNQMVVYFGEEVEKALKHYIEG 247

Query: 246 ---AMTPIGKE--TFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISA 298
              A TP+       F++  K++M         K  A +    K  + H +R    T   
Sbjct: 248 DRKAATPLSGHENALFLSTQKRRMGIQAVENMVKKYARQVTPTKKITPHKLRSTYGTSLY 307

Query: 299 DAGATAHELMATYGWKTVDQA-ETYTK-GADRIRLGIKNSR 337
                 + +    G K V+   + Y     DR R      +
Sbjct: 308 KETGDIYLVADVLGHKDVNTTKKHYAAIDEDRRRKAASAVK 348


>gi|88607245|ref|YP_504674.1| tyrosine recombinase XerD [Anaplasma phagocytophilum HZ]
 gi|88598308|gb|ABD43778.1| tyrosine recombinase XerD [Anaplasma phagocytophilum HZ]
          Length = 311

 Score = 93.2 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 39/278 (14%), Positives = 90/278 (32%), Gaps = 33/278 (11%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTK-----HIRSGVESRKHTPSSAIQFLTS 139
             ++ N+  S++   + + +       + +             +  R ++ ++  + +++
Sbjct: 18  KGVSENTVCSYKCDLEDLSQFLRRNGLKIVDASYGDLCEYIRNLNGRAYSAATVARRVSA 77

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-----EGSQPRL 194
           ++ L  +  +   V  +  LS+E  +      R  ++ D+             EG +   
Sbjct: 78  IKGLCSFLYKDRIVHSDLSLSLESCRLGRTLPRVISESDIGMLLDIAKADLSAEGKRLYA 137

Query: 195 AFEFLLYSGLRCSDSCRAGV--------QHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
               L  SG+R S+    G         +H+ +  + I   K      V L +  M  + 
Sbjct: 138 IVNILYSSGVRISELIHLGFFEIDAMLHEHVGDIGYIIIKGKGNRERLVLLNEVAMDSIR 197

Query: 247 MTPIGKETFFINNDKQKM------------NATQFSIWFKAKATKAGVN---KSAHGVRK 291
                ++ F    + +              +  +     K  A  AG++    S H  R 
Sbjct: 198 AYLEVRKCFIAGENTESRWLFPGAKYDQCISRQRVGQLLKELAISAGIDPEKVSPHKFRH 257

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             AT   + G+    +    G   +   + YT  A   
Sbjct: 258 SFATHLLNNGSNIVFIQKMLGHVNLSTTQVYTHVASEQ 295


>gi|330907916|gb|EGH36439.1| shufflon-specific DNA recombinase [Escherichia coli AA86]
          Length = 336

 Score = 93.2 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 37/215 (17%), Positives = 73/215 (33%), Gaps = 18/215 (8%)

Query: 121 SGVESRKHTPSSAIQF---LTSMRVLFKWA-VRQEYVAINPCLSVERPKRKTEGIRPWTK 176
           + +  R   P +       L  +  LF  A V       NP   V +PK  +   R  T 
Sbjct: 18  AEINPRTGKPITGNTVRLELALLSSLFNIARVEWGTCRTNPVELVRKPKVSSGRDRRLTS 77

Query: 177 EDMQQFKSFWSE-GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTGTII 233
            + ++   ++ E      + F   L + +R  +      +H+     +  +   K G   
Sbjct: 78  SEERRLSRYFREKNLMLYVIFHLALETAMRQGEILALRWEHIDLRHGVAHLPETKNGHSR 137

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKM--NATQFSIWFKAKATKAGV-NKSAHGVR 290
            V L       L M P       +N         A+ F   ++    +  + +   H +R
Sbjct: 138 DVPLSRRARNFLQMMP-------VNLHGNVFDYTASGFKNAWRIATQRLRIEDLHFHDLR 190

Query: 291 KFSATISADAG-ATAHELMATYGWKTVDQAETYTK 324
             + +   + G     E+ A  G ++++  + YT 
Sbjct: 191 HEAISRFFELGSLNVMEIAAISGHRSMNMLKRYTH 225


>gi|197106796|ref|YP_002132173.1| integrase/recombinase XerC [Phenylobacterium zucineum HLK1]
 gi|196480216|gb|ACG79744.1| integrase/recombinase XerC [Phenylobacterium zucineum HLK1]
          Length = 308

 Score = 93.2 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 41/270 (15%), Positives = 85/270 (31%), Gaps = 30/270 (11%)

Query: 85  GSLAVNSRISFE----SYFDQIIRKSGD----FDYRKITTKHIRSGVESRKH-----TPS 131
              +  +  ++      Y   + R  G+     D   +T   +R+ +   +      +P 
Sbjct: 22  RRASPRTLEAYGFVVARYLAFLERHRGEALSAKDLGSVTAGEVRAWLAHLRSGETPLSPR 81

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS---- 187
           S  Q L+++R   ++  R+  +       V  P+ K    RP +++      +  +    
Sbjct: 82  SLSQALSAIRTFHRFLDRRLEIPNAAVGLVRGPRVKPGAPRPVSEDQAIGLIAEPAFDPD 141

Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
               E ++ +     L   GLR S++                T K      V +     +
Sbjct: 142 REGWEAARDQAVLTLLYGCGLRISEALSLRRSDAPLPEQLRITGKGAKTRIVPVLPAVRE 201

Query: 244 LLAMTPIG-------KETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSA 294
            +              E  F       ++        +    + G+  SA  H +R   A
Sbjct: 202 AVDAYLTQVPFGLAPDEPLFRAKRGGPLSPRHVQATVQQLRGRLGLPASATPHALRHSFA 261

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324
           T    AGA    +    G  ++   + YT+
Sbjct: 262 THLLGAGADLRSIQELLGHASLSTTQRYTE 291


>gi|118590571|ref|ZP_01547973.1| site-specific tyrosine recombinase XerC [Stappia aggregata IAM
           12614]
 gi|118437034|gb|EAV43673.1| site-specific tyrosine recombinase XerC [Stappia aggregata IAM
           12614]
          Length = 319

 Score = 93.2 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 40/280 (14%), Positives = 87/280 (31%), Gaps = 30/280 (10%)

Query: 75  ISEYRKS-AHWGSLAVNSRISFESYFDQIIR----KSGDFD----YRKITTKHIRSGVES 125
           + ++    +    L+  + +++E    Q +R      G          +     R  + S
Sbjct: 23  VDQWLDHLSDERRLSDKTLLAYERDLRQFLRFLTNHLGGAPDLKEIAALRPADFRGFLAS 82

Query: 126 RKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM--- 179
           R+       S  + L  +R   ++  R+  V      +V  P++     +P + +D    
Sbjct: 83  RRRDGVQSRSLARGLAGIRSFLRFLERRGEVNAAASAAVRPPRQARSLPKPVSSKDAIDV 142

Query: 180 ----QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRA-GVQHLQNNIFSIKT-QKTGTII 233
                  +S     ++       L   GLR S++    G    +    +++   K G   
Sbjct: 143 TSGELAMESEPWLEARNAAVLTLLYGCGLRISEALSLTGAMAPRTGTKTLRVVGKGGKER 202

Query: 234 TVELPDG-------FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--K 284
            V +          ++KL           F+      +N     +         G+    
Sbjct: 203 IVPILPAVCQAVEHYLKLCPYAISPGGPLFLGARGGPLNPRMIQLAMARLRGALGLPDSA 262

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           + H +R   AT     G     +    G  ++   + YT+
Sbjct: 263 TPHALRHSFATHLLAGGGDLRTIQELLGHASLASTQIYTE 302


>gi|1197009|gb|AAA88676.1| unknown protein [Escherichia coli]
          Length = 337

 Score = 93.2 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 42/306 (13%), Positives = 93/306 (30%), Gaps = 62/306 (20%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129
           ++ + R+   +   ++ +  ++  +    IR  G      + +  + + +      RK +
Sbjct: 16  VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75

Query: 130 PSSAIQFLTSMRVLFK--WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            S+  Q L ++   +         ++       + RP+         T +++ +   F  
Sbjct: 76  VSTHRQALAALLFFYGKVLCTDLPWLQ-----EIGRPRPSRRLPVVLTPDEVVRILGFL- 129

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQH--LQNNIFSIKTQKTGTIITVELPDGFMKLL 245
           EG   RL  + L  +G+R S+  +  V+     +    ++  K      + LP+     L
Sbjct: 130 EGEH-RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSL 188

Query: 246 AMTPIGKETFFINN---------------------------------------------D 260
                    +++ +                                              
Sbjct: 189 REHVSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVR 248

Query: 261 KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           +  M    F   FK    +AG+ K  + H +R   AT    +G     +    G   V  
Sbjct: 249 RHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVST 308

Query: 319 AETYTK 324
              YT 
Sbjct: 309 TMIYTH 314


>gi|29348299|ref|NP_811802.1| transposase [Bacteroides thetaiotaomicron VPI-5482]
 gi|29340202|gb|AAO77996.1| transposase [Bacteroides thetaiotaomicron VPI-5482]
          Length = 397

 Score = 93.2 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 44/265 (16%), Positives = 98/265 (36%), Gaps = 22/265 (8%)

Query: 89  VNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVESRKHTPSSAIQFLTSMRVLFK 145
            ++ IS + Y      +  D    +I           + ++    ++   +L + R ++ 
Sbjct: 124 HSTYISLKKYIGMKSARKSDIRMEEINFSFVVGYEDYLNAQGLARNTINYYLRNFRTIYN 183

Query: 146 WAVRQEYVAI--NPCLSVERPKRKTEGIRPWTKEDMQQFKSF-WSEGSQPRLAFEFLLYS 202
            ++R  +     NP   ++    KT   R   K+DM++  S      S   +A +  L+S
Sbjct: 184 SSIRDGFKPKSENPFTYIQTKPCKTIK-RAINKDDMKKLSSLILPVHSGMDIARDMYLFS 242

Query: 203 ----GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFIN 258
               G+   D      +++++ I S +  K+  +I + +      L+       E  F  
Sbjct: 243 FYAQGMAFVDIVFLKKKNIRDGILSYRRHKSQQLIHIVITPQMQGLIDKYANDSEYVFPI 302

Query: 259 NDKQ---------KMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHEL 307
            D           ++   + + + K    +  +N   + +  R   AT++ ++GA    +
Sbjct: 303 IDTSLSTSIYDQYRLALGRVNRYLKKITFRLNINVRLTTYTARHTWATLARESGAPISII 362

Query: 308 MATYGWKTVDQAETYTKGADRIRLG 332
            A  G  + +    Y K  D+  L 
Sbjct: 363 SAGLGHTSEEMTRVYLKEFDQETLA 387


>gi|300907285|ref|ZP_07124940.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 84-1]
 gi|301303085|ref|ZP_07209211.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 124-1]
 gi|300400989|gb|EFJ84527.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 84-1]
 gi|300841494|gb|EFK69254.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 124-1]
 gi|315252570|gb|EFU32538.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 85-1]
          Length = 431

 Score = 93.2 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 45/317 (14%), Positives = 97/317 (30%), Gaps = 64/317 (20%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK-ITTKHIRSGVESR-- 126
           T+K L  ++        +A  S  ++ +    I+   G+ +    I  + +    +    
Sbjct: 85  TIKELAEKFLALKE-TEVAKTSLNTYRAVIKNILSIIGEKNLASSINKEKLLEVRKELLT 143

Query: 127 --------------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
                           +  +   ++T++  +F++ V   Y+A NP   +   K       
Sbjct: 144 GYQIPKSNYIVTQPGRSAVTVNNYMTNLNAVFQFGVDNGYLADNPFKGISPLKESRTIPD 203

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK----- 225
           P ++E+  +         Q +  +   +Y+G+R  + C  G + +   N    I+     
Sbjct: 204 PLSREEFIRLIDAC-RNQQAKNLWCVSVYTGVRPGELCALGWEDIDLKNGTMMIRRNLAK 262

Query: 226 --------TQKTGTIITV--ELPDGFMKLLAMTPIGKETFF------------------- 256
                      T  +I +     D     + +T + KE                      
Sbjct: 263 DRFTVPKTQAGTNRVIHLIKPAIDALRSQMTLTRLSKEHIIDVHLREYGRTEKQKCTFVF 322

Query: 257 -------INNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELM 308
                  + N             + A   +AG+ ++ ++  R   A  S  AGA    + 
Sbjct: 323 QPEVSARVKNYGDHFTVDSIRQMWDAAIKRAGLRHRKSYQSRHTYACWSLTAGANPAFIA 382

Query: 309 ATYGWKTVDQA-ETYTK 324
              G        + Y K
Sbjct: 383 NQMGHADAQMVFKVYGK 399


>gi|163738332|ref|ZP_02145747.1| phage integrase [Phaeobacter gallaeciensis BS107]
 gi|161388253|gb|EDQ12607.1| phage integrase [Phaeobacter gallaeciensis BS107]
          Length = 311

 Score = 93.2 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 40/236 (16%), Positives = 78/236 (33%), Gaps = 19/236 (8%)

Query: 107 GDFDYRKITTKHIRSGVESRKHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVER 163
           G     +I+T  +R+ + + + T + A    + L++++  + W   ++       LS   
Sbjct: 58  GLGALAEISTGDMRAWMAATRATGTGARSLARKLSAVKSFYTWLAERQGFEPTAVLSARS 117

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWS-------EGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216
           PK + +  RP  ++  +                ++       L   GLR S++       
Sbjct: 118 PKFQKKLPRPLAEDAARAVIETVEFQSTTDWVAARDVAVVTLLYGCGLRISEALGLTGAD 177

Query: 217 LQNNIFSIKTQKTGTIITVELP-------DGFMKLLAMTPIGKETFFINNDKQKMNATQF 269
                    T K G    V +        D +++L           F       +NA   
Sbjct: 178 APLPAVLRITGKGGKERIVPVLHAARAAVDRYLRLCPHPQERAAPLFRGVRGGALNARLI 237

Query: 270 SIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
                    + G+  SA  H +R   AT   +AG     +    G  ++   + YT
Sbjct: 238 RSAMAQARAQLGLPASATPHALRHSFATHLLEAGGDLRAIQELLGHASLSTTQAYT 293


>gi|322378161|ref|ZP_08052646.1| prophage L54a, integrase [Streptococcus sp. M334]
 gi|321280891|gb|EFX57906.1| prophage L54a, integrase [Streptococcus sp. M334]
          Length = 377

 Score = 93.2 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 51/302 (16%), Positives = 103/302 (34%), Gaps = 38/302 (12%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           T+K    EY K      L  ++  S +      +RK  ++    +T+  +++ +   + +
Sbjct: 69  TVKQAYEEYLKIRE-TELKRSTFKSQKYTIIGEVRKLENYLLVDVTSHIVQNILLELECS 127

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT-------EGIRPWTKEDMQQF 182
                     + + FK+ +   Y+  NP   V  PKRK        +  +  T+  M Q+
Sbjct: 128 AVHRKNKKVLLNLFFKYYLDIGYIMENPVEKVVLPKRKKNVKEIRRKQNKYLTRVQMFQY 187

Query: 183 KSFWSE---GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK----TQKTGTII 233
            +F  +     + RL  EF+  +GLR  +     +  +   N    +K    T  +   I
Sbjct: 188 LNFLEKEEKNQRVRLIVEFMYLTGLRFGEVLALTIDDIDFENKTLEVKHTLHTSGSKAEI 247

Query: 234 TVELPDGFMKLLAMTPI--------------GKETFFINNDKQKMNATQFSIWFKAKATK 279
            ++ P        +                 G+  F    +      T F+ + K+   K
Sbjct: 248 FLDSPKSLASYRVVGISNRVVSIIKEYLLLEGEGRFIFTKNGTPFMITGFNNFLKSSFKK 307

Query: 280 AGVNK------SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLG 332
           + + K      + H  R    ++ A+       +M   G          YT    +++  
Sbjct: 308 SKIEKEEDFVLTTHVFRHSHISLLAELEVPIKAIMERVGHTNEKMTLGVYTHVTQQMKFN 367

Query: 333 IK 334
           I 
Sbjct: 368 IT 369


>gi|307565783|ref|ZP_07628249.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
 gi|307345510|gb|EFN90881.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
          Length = 409

 Score = 93.2 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 65/198 (32%), Gaps = 17/198 (8%)

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-----SEGSQPRL 194
           ++ + + A R+    +     V+  K   +  +   + + ++ K+        E    R 
Sbjct: 192 LKTVCRLAYREGLADLLLFDKVKISKGNKKLPKALDRGEFEKLKTLHFEDLEEEMETARD 251

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVELPDGFMKLLAMTP 249
            F F  Y+G    D       HL  +           QKT     V+L    ++L+    
Sbjct: 252 IFLFACYTGAAYCDLMELDKSHLVRDDEGSLWLKFNRQKTSVPCRVKLLPEAIRLMEKLH 311

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS-ADAGATAHE 306
             +    +      M    +  + KA   +AG+    + H  R   AT+   + G     
Sbjct: 312 SDERETLL----PFMGYATYQSYLKALRLRAGISFPFTTHTARHTFATLITLEQGVPIET 367

Query: 307 LMATYGWKTVDQAETYTK 324
           +    G   V   E Y K
Sbjct: 368 VSKMLGHSNVSMTERYAK 385


>gi|322831910|ref|YP_004211937.1| integrase family protein [Rahnella sp. Y9602]
 gi|321167111|gb|ADW72810.1| integrase family protein [Rahnella sp. Y9602]
          Length = 328

 Score = 93.2 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 57/304 (18%), Positives = 107/304 (35%), Gaps = 20/304 (6%)

Query: 29  HGRRIRLPY--PHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGS 86
            G+RIR  +    E+     Y+ A        +  ++ R+K T L  L   Y    H   
Sbjct: 21  DGKRIRRKFNTKGEAQIFERYIIARYQDKAWLDK-SADRRKLTELLSLWWVYHGKHHVRG 79

Query: 87  LAVNSRISFESYFDQIIRKSGDFDYRKITTK---HIRSGVESRKHTPSSAIQFLTSMRVL 143
               SR    S  + +    G     ++T K     R  +      P+S  +    +  +
Sbjct: 80  EIDRSR--LHSIVNHLSE-MGVTRADQLTHKAIIDYRIMMLDLGLKPASVNRHQAILSGM 136

Query: 144 FKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202
           F   +    Y   +P   V++ +  T  +   T ++++       EG   ++A +  L +
Sbjct: 137 FTKLISAGEYHNAHPFREVKKLREGTTEMAYLTTDEIKALLQTL-EGDNLKVA-QLCLAT 194

Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ 262
           G R  +      +H+  N+ +    K G   +V + D  ++ +     G+   F++N   
Sbjct: 195 GGRWGEVSNLKGEHIIKNVITFMKTKNGKRRSVPVSDELVRAIKTKASGR--LFVSNY-- 250

Query: 263 KMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
                   +  +         ++AH +R   AT     G     L    G  T+ Q  TY
Sbjct: 251 ----NTVRMTLRKVKPDLPKGQAAHVLRHTFATHFMMNGGNIITLQRVLGHATIQQTMTY 306

Query: 323 TKGA 326
              A
Sbjct: 307 AHFA 310


>gi|257056384|ref|YP_003134216.1| site-specific recombinase XerD [Saccharomonospora viridis DSM
           43017]
 gi|256586256|gb|ACU97389.1| site-specific recombinase XerD [Saccharomonospora viridis DSM
           43017]
          Length = 402

 Score = 93.2 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 52/300 (17%), Positives = 95/300 (31%), Gaps = 48/300 (16%)

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSG 122
           P     +   +  ++ +S H   L  ++   +    D  +  + GD   R I ++ I + 
Sbjct: 74  PTTAKVSFAEVADKWLESRH--DLRPSTWWKYRGLLDTHVNVRWGDVQLRAIRSEDIAAW 131

Query: 123 VESR---------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
           + S             PS A      + ++  W V  + +  NP   V+ P R       
Sbjct: 132 LGSLLKSRTEGGSGLGPSQARHAFRVLSMVLDWCVPAKLL-RNPAEGVKLPVRPETEHVY 190

Query: 174 WTKEDMQQFKSFW-----------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---- 218
            + E +++  +             +  S  R     L Y+GLR  ++    V  +     
Sbjct: 191 LSFEQVERLANAAGDLRTKYGRPTASASVNRALILLLAYTGLRWGEAAALRVGRVDLVKR 250

Query: 219 -----------NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG---KETFFINNDK--- 261
                      N +      K+G   TV +P   +  L     G    E  F        
Sbjct: 251 RIRVVSTFYELNGVQHEGPPKSGKHRTVAIPPSLVPELKQVIGGRGDHELVFTTARGASL 310

Query: 262 --QKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
                   +F+   K  A   G+  + H +R  +A+++  AGA    L    G       
Sbjct: 311 RANNWRVREFNPAVKL-AKLDGLGLTPHKLRHTAASLAIAAGADVKVLQHMLGHADAAMT 369


>gi|226951511|ref|ZP_03821975.1| phage integrase [Acinetobacter sp. ATCC 27244]
 gi|226837747|gb|EEH70130.1| phage integrase [Acinetobacter sp. ATCC 27244]
          Length = 402

 Score = 93.2 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 51/306 (16%), Positives = 102/306 (33%), Gaps = 30/306 (9%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRSGVESRK- 127
           T      EY    +       ++  + S  +++ +    D     I+++ +RS V  R+ 
Sbjct: 93  TFAQYAQEYL--YNLSDHKHGTKKKYLSILERLWMPLFADMPINTISSQMLRSAVNGREW 150

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----- 182
            +  +    L  +R  F+ A   E +  NPC  ++  K +     P+ + + ++      
Sbjct: 151 SSAKTRNDALIPLRGAFELANDDEIIDKNPCDRLKNQKTQETEPDPFNEIERERILNWLR 210

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK----------TQKTG 230
           + + ++       F    ++G R S+      Q +   N    I           T KT 
Sbjct: 211 EKYLADYPTVYWYFVVAFWTGCRPSEIIALTWQDVDFLNKQIHINKGRVNGVQQETTKTN 270

Query: 231 TIITVELPDGFMKL-----LAMTPIGKETFFINNDKQKMNA-TQFSIWFKAKATKAGVNK 284
               V+L D   +      L      +  F  +   ++       S  F A     G+  
Sbjct: 271 KARFVDLNDFAFEAFQQLRLLTYLKYEHVFICDETGEEFTTQKSLSEKFVAALKANGIRY 330

Query: 285 S-AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK--GADRIRLGIKNSRRISS 341
             A+  R   AT+    G     + +  G   V   + Y K   +D+ +  I      + 
Sbjct: 331 RPAYNTRHTYATVCLMNGLNPVYVASQLGHSLVMLMKRYAKWINSDKNKEEIAKISNSAK 390

Query: 342 VVDSDD 347
           +V    
Sbjct: 391 IVPKKK 396


>gi|222034355|emb|CAP77096.1| Phage integrase [Escherichia coli LF82]
 gi|312601703|gb|ADQ92377.1| integrase [Salmonella phage RE-2010]
          Length = 338

 Score = 93.2 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 44/320 (13%), Positives = 90/320 (28%), Gaps = 39/320 (12%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87
            +G+R+R           A+ S       K+ ++     +   L  LI ++         
Sbjct: 20  RNGKRVR-KQFATKGEAIAFESFTMEEVNKKPWLGEKEDRRH-LSELIEQWY---SLYGQ 74

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--------------TPSSA 133
            +       +    I    GD    ++T        E+R                 P + 
Sbjct: 75  TLADPKRLMAKLRIICNGLGDPIASELTAGDFTKYREARLKGEVRNEDGTLMSPVKPRTV 134

Query: 134 IQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
                ++  +F    +   + A NP   +   K     +   + +++++  +  +E   P
Sbjct: 135 NLEQRNLSSVFGTLKKLGHWSAPNPLAGLPTFKITEGELAFLSVDEIKRLLAACAESQSP 194

Query: 193 RLAF--EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250
            L    +  L +G R S++       +     +    K     TV +       L     
Sbjct: 195 SLLMIAKICLATGARWSEAENLQGHQISKYRITYTKTKGKKNRTVPISQDLYHELPK--- 251

Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS----AHGVRKFSATISADAGATAHE 306
                   N  +          F+    +AG++       H +R   A+     G     
Sbjct: 252 --------NRGKLFTP--CRKSFERAVKRAGIDLPEGQCTHVLRHTFASHFMMNGGNILV 301

Query: 307 LMATYGWKTVDQAETYTKGA 326
           L    G   +     Y   A
Sbjct: 302 LRDILGHSDIKMTMVYAHFA 321


>gi|61106482|gb|AAX39006.1| int-OPT [synthetic construct]
          Length = 386

 Score = 93.2 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 57/348 (16%), Positives = 107/348 (30%), Gaps = 31/348 (8%)

Query: 27  KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGS 86
            G G R   P+  ++            +   R      R    T         + +    
Sbjct: 34  PGGGPRQNAPHTFKTKTDAHRWLTRVEADISRGTWLDDRAAGETFGNYARAILRDS--PK 91

Query: 87  LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE---SRKHTPSSAIQFLTSMRVL 143
           + V  R + E      +        R++T   +R             +S  Q    +R++
Sbjct: 92  IGVRWRETCERNLRLHLVPLVTVPLREVTASRVREWHAAALRGSGGRTSISQSYRFLRMV 151

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203
              AVR+  +A +PC        +       T   +       +   + R A     + G
Sbjct: 152 MNTAVREGIIARSPCQIPGAGTVRAAERPVATPAQVVALVE--AINPRYRTAVLIAAWCG 209

Query: 204 LRCSDSCRAGVQHLQNNIFSIKTQKTGTI-------------------ITVELPDGFMKL 244
           LR  +     V  +     +I  +K                        T+ +P   + +
Sbjct: 210 LRRGEIAGLRVADVDLTEHTITVRKARVEPLHDRGKAFDKDPKSEAGKRTIAIPPHVVPV 269

Query: 245 LAM---TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADA 300
           + +      GK+  F++ D   +        F     K G++  + H +R    T++A  
Sbjct: 270 IRLHLDEFAGKDRLFVSRDGSPLRGDTLYQAFVRARGKVGLDTLTFHDLRHTGQTLAAQT 329

Query: 301 GATAHELMATYGWKTVDQAETYTKGAD-RIRLGIKNSRRISSVVDSDD 347
           GAT  +LM   G  ++  A  Y    D R R   K    +++  D   
Sbjct: 330 GATLADLMKRLGHSSMAAARRYLHAVDGRDREIAKALSELAAHGDVAR 377


>gi|319902961|ref|YP_004162689.1| integrase family protein [Bacteroides helcogenes P 36-108]
 gi|319417992|gb|ADV45103.1| integrase family protein [Bacteroides helcogenes P 36-108]
          Length = 410

 Score = 93.2 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 48/277 (17%), Positives = 101/277 (36%), Gaps = 32/277 (11%)

Query: 85  GSLAVNSRISF---ESYFDQIIR---KSGDFDYRKITTKHIRSG----VESRKHTPSSAI 134
              A+ +   +   + Y +++IR      D    ++  + +R+        R+   ++ I
Sbjct: 130 KDYALITVRRYDNCKKYLNEVIRYKYAKDDLPLTEVNGELVRAFEFYLKTERECQQNTVI 189

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WSEGSQ 191
           +++  ++ +   A+  E++  NP L ++  +++       T +++ +  +        + 
Sbjct: 190 RYMKCLKKIINLALSNEWITKNPFLGIKFHEKEVI-REFLTIDELMRIYNKEFELDRITL 248

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVELPDGFMKLLA 246
            R  F F  ++GL   D  +   +H+  +           QKT  +  + L D  M++L 
Sbjct: 249 VRDVFIFAAFTGLAFIDVQQLSAEHIIKDNNGHYWIRKARQKTNNMCNIPLLDIPMQILN 308

Query: 247 MTPI-----GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS-A 298
                     K+        QKMN+     + K  A    +NK  S H  R   AT    
Sbjct: 309 KYSNNPQCLKKQVLLPVPCNQKMNS-----YLKEIADLCNINKRMSTHTARHSYATSVCL 363

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335
             G +   +    G   +   + Y K  D   L    
Sbjct: 364 ANGVSIENVAKMLGHSNIKMTQHYAKVMDSSILKDMM 400


>gi|315442147|ref|YP_004075026.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1]
 gi|315260450|gb|ADT97191.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1]
          Length = 395

 Score = 93.2 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 60/381 (15%), Positives = 117/381 (30%), Gaps = 65/381 (17%)

Query: 5   LRLPPFVTKE--RTRH-GKIIYYFRKG---------HGRRIRLPYPHESTFIPAYMSALT 52
            +LPP + K     R  GK +  +R             R+    +          ++ L 
Sbjct: 4   QQLPPQIKKVDILDRSTGKTVVRYRVKVDVGAHPETGKRQQAKRHCRTEQEARKVLAELQ 63

Query: 53  GSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYR 112
                  Y++  +    T++ + + Y   A   +L  +S          +  + G    +
Sbjct: 64  NKAVTGTYVSPSKV---TVEQVCANYI--AGRHNLRESSLSKLAYDLAPLRERHGKLPAQ 118

Query: 113 KITTKHI--------------RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158
           ++T  HI                G   R  +P +  + + ++  +   A+ Q+ V  N  
Sbjct: 119 RLTKAHIDQLVTDLVAGGTKTAKGRTRRAWSPVAVNKVIATIDQVLDDALDQKIVTFNVA 178

Query: 159 LSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218
             V R     + +  +T  ++ Q +  +++  +   A+E  LY GLR  +        + 
Sbjct: 179 AKVARVSSAQKDVDTFTTTEVDQLRKQFAK-DRIGHAWELALY-GLRRGEIAGLRWADVD 236

Query: 219 --NNIFSI---KTQKTGTIIT-----------VELPDGFMKLLAMTPI------------ 250
             +   +I   +    G  +            + LP   + +L                 
Sbjct: 237 LQDKTLAIANNRVSAGGATVENDPKSHASRRELPLPARLVTVLRAAKKRQAAERLALGEH 296

Query: 251 --GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHEL 307
               E    N   +  N    S ++      AGV     HG R  +AT+    G     +
Sbjct: 297 YGSGEYVVSNEIGEPYNPAVLSRYWADAVKAAGVRHIKLHGGRHTAATLMHLDGVPVAVI 356

Query: 308 MATYGWKTVD-QAETYTKGAD 327
            A  G          Y    D
Sbjct: 357 AAWIGHSDPTLTLRVYAHSQD 377


>gi|293400047|ref|ZP_06644193.1| putative tyrosine recombinase XerC [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291306447|gb|EFE47690.1| putative tyrosine recombinase XerC [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 341

 Score = 93.2 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 47/281 (16%), Positives = 103/281 (36%), Gaps = 12/281 (4%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
               TLK L   + +   +  L  + + S +S +     K     YR+I   H++  ++ 
Sbjct: 65  AHKMTLKDLYELWLE-KKYPKLGKSLQGSLKSAYKH-CYKIHLMRYREIKAIHMQDCIDK 122

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV--ERPKRKTEGIRPWTKEDMQQFK 183
                S+          L K+A+  + +  +    +  +     T+G    + E +    
Sbjct: 123 CGKGYSTQWAIKNLFGHLDKFALELDVINKSYAQLINADPIPETTKGR--LSNEQINTIW 180

Query: 184 SFWSEGSQPRL-AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT---GTIITVELPD 239
             +  G  P   +    +Y+G R S+     V ++  +  +I        G    + +  
Sbjct: 181 KIYESGEYPWADSILVFIYTGFRISELLSIEVANVDLDNRTITGGMKSEAGKNRIIPIHP 240

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISAD 299
               ++         +  + + +  + TQ+  ++     + G +++ H  R    ++  D
Sbjct: 241 LIYDIIVKRMNEGNKYLFSLNGKHCSKTQYYEFWYEIIDQLGEHRTPHECRHTFRSLLDD 300

Query: 300 AGATAHELMATYGWKTVDQAE-TYT-KGADRIRLGIKNSRR 338
           AGA    +    G K+ D  E  YT K  + +R  I+  +R
Sbjct: 301 AGANKKCIDMMMGHKSNDVGERRYTHKSIESLREAIELIKR 341


>gi|312115205|ref|YP_004012801.1| integrase family protein [Rhodomicrobium vannielii ATCC 17100]
 gi|311220334|gb|ADP71702.1| integrase family protein [Rhodomicrobium vannielii ATCC 17100]
          Length = 427

 Score = 93.2 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 41/268 (15%), Positives = 92/268 (34%), Gaps = 29/268 (10%)

Query: 93  ISFESYF-DQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVR 149
              E     +I+          IT   +   +++   +  P+ A + L+++R +  WAV 
Sbjct: 127 RETERILQREIVPVWKGRKLGDITRADVHEVLDAIVNRGCPTMANRTLSTVRKMCAWAVD 186

Query: 150 QEYVAINPCLSVERPKRKTEGIRPWTKEDMQ----QFKSF-WSEGSQPRLAFEFLLYSGL 204
           + ++A++PC  ++ P  +    R  ++++M+     F++  W  G   +     LL +  
Sbjct: 187 RSFIAVSPCHGIKAPASEKSRDRLLSEDEMRAAWLAFEATGWPFGPLAK----LLLATAQ 242

Query: 205 RCSDSCRAGVQHLQNNIFSIK----TQKTGTIITVELPDGFMKLLAMTPIGK---ETFFI 257
           R  +        +              K G    V L +  + +L   P      +  F 
Sbjct: 243 RRDEVADMRWSEIDFKTRIWTIPAARSKNGQAHEVPLSEAALAILDGLPHVAGVSDYVFT 302

Query: 258 NNDKQKMN-----ATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYG 312
              K  ++        F      +  +     + H +R+ +A+      +  H + A   
Sbjct: 303 TTGKTPVSGFSRAKKAFDEQITRQLGEGIPGWTLHDLRRTAASGMTALKSPPHVVDAVLN 362

Query: 313 WKTVDQ---AETYTK--GADRIRLGIKN 335
            K+      +  Y +   A   R  +  
Sbjct: 363 HKSGTIKGVSAVYMRYGYAAEKRTALDA 390


>gi|241992614|gb|ACS73664.1| IntI1 [uncultured bacterium]
          Length = 315

 Score = 93.2 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 42/306 (13%), Positives = 92/306 (30%), Gaps = 62/306 (20%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129
           ++ + R+   +   ++ +  ++       IR  G      + +  + + +      RK +
Sbjct: 16  VLDQLRERIRYLHYSLRTEQAYVHRVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75

Query: 130 PSSAIQFLTSMRVLFK--WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            S+  Q L ++   +         ++       + RP+         T +++ +   F  
Sbjct: 76  VSTHRQALAALLFFYGKVLCTDLPWLQ-----EIGRPRPSRRLPVVLTPDEVVRILGFL- 129

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQH--LQNNIFSIKTQKTGTIITVELPDGFMKLL 245
           EG   RL  + L  +G+R S+  +  V+     +    ++  K      + LP+     L
Sbjct: 130 EGEH-RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSL 188

Query: 246 AMTPIGKETFFINN---------------------------------------------D 260
                    +++ +                                              
Sbjct: 189 REQLSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVR 248

Query: 261 KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           +  M    F   FK    +AG+ K  + H +R   AT    +G     +    G   V  
Sbjct: 249 RHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVST 308

Query: 319 AETYTK 324
              YT 
Sbjct: 309 TMIYTH 314


>gi|324993830|gb|EGC25749.1| phage integrase family integrase/recombinase [Streptococcus
           sanguinis SK405]
 gi|324994849|gb|EGC26762.1| phage integrase family integrase/recombinase [Streptococcus
           sanguinis SK678]
 gi|327474704|gb|EGF20109.1| phage integrase family integrase/recombinase [Streptococcus
           sanguinis SK408]
          Length = 328

 Score = 93.2 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 37/279 (13%), Positives = 88/279 (31%), Gaps = 15/279 (5%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----SRKHT 129
           L+  +  +      +  S   ++   + ++        R +TT  +R+ +      RK +
Sbjct: 53  LLELFISAKRIEGCSEKSLKYYKIVIENMLISL-KTAIRDLTTGDLRTYLAHYQQERKSS 111

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
             +           F W   ++Y+  +P   + + K        ++ E ++  +    E 
Sbjct: 112 KVTIDNMRRIFSSFFGWLEDEDYILKSPVRRIHKIKTDKTIKETFSDEGLELLRDACDE- 170

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG-----FMKL 244
            +     + L  +G+R  +  R   + +            G    +   D       +  
Sbjct: 171 IRDLAMIDLLASTGMRVGELVRLNREDINFYERECLVFGKGNSERIVYFDARTKIHLINY 230

Query: 245 LAMTPIGKETFFINND--KQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG 301
           L          F++      ++         +    KA +NK   H  R+  AT + D G
Sbjct: 231 LDNRQDDNPALFVSLSFPYNRLLIGGVETRLRQIGEKADLNKVHPHKFRRTLATRAIDKG 290

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
               ++    G   +D    Y    ++  +   + + I 
Sbjct: 291 MPIEQVQHLLGHVKIDTTMHYA-MVNQANVKNSHRKYIG 328


>gi|198240906|gb|ABG36697.2| integrase [Salmonella enterica subsp. enterica serovar Newport]
          Length = 337

 Score = 93.2 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 42/306 (13%), Positives = 92/306 (30%), Gaps = 62/306 (20%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129
           ++   R+   +   ++ +  ++  +    IR  G      + +  + + +      RK +
Sbjct: 16  VLDRLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLFWLANERKVS 75

Query: 130 PSSAIQFLTSMRVLFK--WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            S+  Q L ++   +         ++       + RP+         T +++ +   F  
Sbjct: 76  VSTHRQALAALLFFYGKVLCTDLPWLQ-----EIGRPRPSRRLPVVLTPDEVVRILGFL- 129

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQH--LQNNIFSIKTQKTGTIITVELPDGFMKLL 245
           EG   RL  + L  +G+R S+  +  V+     +    ++  K      + LP+     L
Sbjct: 130 EGEH-RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSL 188

Query: 246 AMTPIGKETFFINN---------------------------------------------D 260
                    +++ +                                              
Sbjct: 189 REQLSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVR 248

Query: 261 KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           +  M    F   FK    +AG+ K  + H +R   AT    +G     +    G   V  
Sbjct: 249 RHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVST 308

Query: 319 AETYTK 324
              YT 
Sbjct: 309 TMIYTH 314


>gi|209886555|ref|YP_002290412.1| phage integrase family protein [Oligotropha carboxidovorans OM5]
 gi|209874751|gb|ACI94547.1| phage integrase family protein [Oligotropha carboxidovorans OM5]
          Length = 414

 Score = 93.2 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 55/331 (16%), Positives = 117/331 (35%), Gaps = 22/331 (6%)

Query: 9   PFVTKERTRHGK---IIYYFRKGHGRRIRLP--YPHES-TFIPAYMSALTGSTPKREYIN 62
           P    + T  G+   ++ Y   G G R+R     P+   T   A ++A      K E  +
Sbjct: 42  PGFGVKVTPKGRKVFVVMYRTAGSGSRLRKYTIGPYGRVTLNQARVAAQKVFAAKLEGRD 101

Query: 63  SPRKKPTTLKWLISEYRKSA--HWGSLAVNSRISFESYFDQIIRK----SGDFDYRKITT 116
              +K  + + ++++  +     + +  V+   S       + R+     G     +I+ 
Sbjct: 102 LAAEKAASRRRIVADRVEDLLEAFIAQHVSQNRSAREISRMLRREVGAVWGSRSIHEISK 161

Query: 117 KHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
           + + + V S  ++  P +A + L +++  F+W V +  +  +P   V  P ++    R  
Sbjct: 162 RDVIAIVNSIEQRGAPIAANKMLKTIKTFFRWCVGRALLDRSPADGVPLPAKQVARDRVL 221

Query: 175 TKED-MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKT 229
           + ++ ++   +    G       E L  +G R  +  R     +     + +      K 
Sbjct: 222 SDDELVRVILAARQLGGPYGNIVEMLALTGQRREEVARCTWDEINLTTRTWRLPSERTKN 281

Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHG 288
           G    + L D  + +LA    G  T F+ +         F          + V     H 
Sbjct: 282 GKAHEIYLSDQAVAVLARATTG--TKFVFSKTGAFAFQGFGPAKDEIDKLSDVTGWRLHD 339

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQA 319
           +R+   +  A  G   H        +T   +
Sbjct: 340 LRRTCVSGMARLGVAPHVADKILNHQTGTIS 370


>gi|167841198|ref|ZP_02467882.1| Phage integrase:Phage integrase, N-terminal SAM-like protein
           [Burkholderia thailandensis MSMB43]
          Length = 238

 Score = 93.2 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 38/204 (18%), Positives = 74/204 (36%), Gaps = 16/204 (7%)

Query: 133 AIQFLTSMRVLFKWAVRQEYVAI-NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           A + +  +  +F +A         NPCL ++  K    G   + ++D+  F+  +    Q
Sbjct: 28  ANRDIEVLSHMFNFAREIGMTKAANPCLGIK--KYSESGRDVYVEDDL--FRKVYDHADQ 83

Query: 192 P-RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250
           P R A +    +G +  D+     + +++N   I   KTG  + +E+    M ++     
Sbjct: 84  PTRDAMDLAYLTGQQPQDTLPHDERDIRDNFLHIDQGKTGKKLRMEVTGALMAVINRIRA 143

Query: 251 GKE-------TFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADA 300
            K           +N   ++M        F+    KA V         +R  + T   D+
Sbjct: 144 RKAGYKIVSTALVVNEKGERMTLDTLQRRFRDARRKADVRDNEFQFRDLRAKAGTDKTDS 203

Query: 301 GATAHELMATYGWKTVDQAETYTK 324
                +     G  +V   E Y +
Sbjct: 204 TGDIRQAQRQLGHTSVAMTEHYVR 227


>gi|119717469|ref|YP_924434.1| phage integrase family protein [Nocardioides sp. JS614]
 gi|119538130|gb|ABL82747.1| tyrosine recombinase XerC subunit [Nocardioides sp. JS614]
          Length = 312

 Score = 93.2 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 38/298 (12%), Positives = 93/298 (31%), Gaps = 29/298 (9%)

Query: 68  PTTLKWLISEYRKS-AHWGSLAVNSRISFESYFDQIIRK---SGDFDYRKITTKHIRSGV 123
           P  +   + +Y +  A    L+ ++  ++      ++      G  +   +  + +RS +
Sbjct: 11  PEAMARALGDYERHLAAERDLSEHTVRAYIGDVAGLLEHASRLGQTEPGDLDLRTLRSWL 70

Query: 124 ES---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED-- 178
                   + ++  +  T+ RV   W  R     ++   S+  PK           ++  
Sbjct: 71  AKQQTMGRSRTTLARRATAARVFTAWLARTGRTPLDAGASLGAPKAHRTLPPVLRTDEAA 130

Query: 179 ------MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGT 231
                 ++        G +     E L  +G+R  +     +  L      ++   K   
Sbjct: 131 DLVRAAVEHADDGSPVGLRDVAMLELLYATGIRVGELVGLDIDDLDRERNVVRVLGKGRK 190

Query: 232 IITVELPDGFMKL----------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK-- 279
             TV       +           L          F+    ++++          +  +  
Sbjct: 191 ERTVPFGRPAARAVDFWLKHGRPLLAVEGSGAALFLGARGRRIDQRAVRTVVHRRIAEVP 250

Query: 280 AGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNS 336
              +   HG+R  +AT   + GA    +    G  ++   + YT    +R+R   + +
Sbjct: 251 GAPDIGPHGLRHTAATHLLEGGADLRSVQELLGHASLATTQIYTHVSTERLRRAYQQA 308


>gi|85859016|ref|YP_461218.1| phage integrase family protein [Syntrophus aciditrophicus SB]
 gi|85722107|gb|ABC77050.1| phage integrase family protein [Syntrophus aciditrophicus SB]
          Length = 316

 Score = 93.2 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 50/318 (15%), Positives = 100/318 (31%), Gaps = 33/318 (10%)

Query: 20  KIIYYFRKGHGRRIRLPYPHESTFIPA-Y---MSALTGSTPKREYINSPRKKPTT--LKW 73
            + +Y+    G+ +      +  F  A Y     A          ++   ++P    LK 
Sbjct: 11  GVRWYY---SGQYL-----GQKYFSRAIYLTKQEAKRAERETIAEMDQKARQPGEVLLKD 62

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK-------HIRSGVESR 126
           LI E R        +         Y  +++   G+   + IT +            +  R
Sbjct: 63  LIEE-RLDIILHKKSKVYYRENRLYMKKLLDAVGNIPIQDITRQQIHKVLIDYSKDLRKR 121

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
             T   A   +   + LF + +   E    NP   ++            T ED+   K  
Sbjct: 122 GKTDHKANAMIRCFKALFNYGISLYELNMKNPVKGIQFFSVDINLKYIPTDEDILAVKEG 181

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
            +E  + +   +F   +G R +++ R     + +N   + T+K                L
Sbjct: 182 LTE--EQKFLIDFCQQTGCRINEALRLKGSDIGDNYIVLYTRKARNSNLTPRKIPKPPCL 239

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATA 304
           A     KE  F      + +      + + +  K  +   + H +R   A+  +      
Sbjct: 240 AGYKPKKERVF-----SEWS--NVPRFLEKRVKKLDMKYWTWHNLRHKYASELSKRNVPL 292

Query: 305 HELMATYGWKTVDQAETY 322
            E+M   G   +   + Y
Sbjct: 293 FEIMNLLGHSNMKTTQIY 310


>gi|77410914|ref|ZP_00787270.1| site-specific recombinase, phage integrase family [Streptococcus
           agalactiae CJB111]
 gi|77162969|gb|EAO73924.1| site-specific recombinase, phage integrase family [Streptococcus
           agalactiae CJB111]
          Length = 384

 Score = 93.2 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 49/279 (17%), Positives = 92/279 (32%), Gaps = 44/279 (15%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWA 147
           A  +   F  +   I+   GD    KI+    ++ +  +  T  +  Q  +    +F +A
Sbjct: 90  ASRTLDMFRLH---ILPVMGDLPISKISPLDCQNFITEKAKTFKNIKQIKSYTGKIFDFA 146

Query: 148 VRQEYVAINPCLSVERPKRKTEGIR-PWTKEDMQQFKS--FWSEGSQPRLAFEFLLYSGL 204
           ++ + +  NP   +  PKRK   I   WT +++++F +     E  +    F  L YSGL
Sbjct: 147 IKMKLLKHNPMAEIIMPKRKKTQIENYWTVQELKEFLAIVLQEEPYKHYALFRLLAYSGL 206

Query: 205 RCSDSCRAGVQHLQ---------------NNIFSIKTQKTGTII--------TVELPDGF 241
           R  +        +                +     K  K    +        T+ +   +
Sbjct: 207 RKGELYALKWADIDFQSETLSVNKSLGRLDGQAIEKGTKNDFSVRKIKLDSETISILQEW 266

Query: 242 MK---------LLAMTPIGKETFF--INNDKQ--KMNATQFSIWFKAKATKAGVNK-SAH 287
                       +A   I ++  F           ++A   +        K G+ K S H
Sbjct: 267 KANCQKEKAQLAVAPLSIKQDFIFTYCTRSGSVEPLHADYINNVLSRIIKKHGLKKISPH 326

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKG 325
           G R   AT+  + G          G  +     +TY+  
Sbjct: 327 GFRHTHATLMIEIGVDPVNTAKRLGHASSQMTLDTYSHS 365


>gi|241992559|gb|ACS73625.1| IntI1 [uncultured bacterium]
          Length = 315

 Score = 93.2 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 41/306 (13%), Positives = 92/306 (30%), Gaps = 62/306 (20%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129
           ++ +  +   +   ++ +  ++  +    IR  G      + +  + + +      RK +
Sbjct: 16  VLDQLHERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75

Query: 130 PSSAIQFLTSMRVLFK--WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            S+  Q L ++   +         ++       + RP+         T +++ +   F  
Sbjct: 76  VSTHRQALAALLFFYGKVLCTDLPWLQ-----EIGRPRPSRRLPVVLTPDEVVRILGFL- 129

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQH--LQNNIFSIKTQKTGTIITVELPDGFMKLL 245
           EG   RL  + L  +G+R S+  +  V+     +    ++  K      + LP+     L
Sbjct: 130 EGEH-RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSL 188

Query: 246 AMTPIGKETFFINN---------------------------------------------D 260
                    +++ +                                              
Sbjct: 189 REQLSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVR 248

Query: 261 KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           +  M    F   FK    +AG+ K  + H +R   AT    +G     +    G   V  
Sbjct: 249 RHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVST 308

Query: 319 AETYTK 324
              YT 
Sbjct: 309 TMIYTH 314


>gi|241992522|gb|ACS73599.1| IntI1 [uncultured bacterium]
          Length = 315

 Score = 93.2 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 42/306 (13%), Positives = 93/306 (30%), Gaps = 62/306 (20%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129
           ++ + R+   +   ++ +  ++  +    IR  G      + +  + + +      RK +
Sbjct: 16  VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75

Query: 130 PSSAIQFLTSMRVLFK--WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            S+  Q L ++   +         ++       + RP+         T +++ +   F  
Sbjct: 76  VSTHRQALAALLFFYGKVLCTDLPWLQ-----EIGRPRPSRRLPVVLTPDEVVRILGFL- 129

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQH--LQNNIFSIKTQKTGTIITVELPDGFMKLL 245
           EG   RL  + L  +G+R S+  +  V+     +    ++  K      + LP+     L
Sbjct: 130 EGEH-RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSRDRALMLPESLAPSL 188

Query: 246 AMTPIGKETFFINN---------------------------------------------D 260
                    +++ +                                              
Sbjct: 189 REQLSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVR 248

Query: 261 KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           +  M    F   FK    +AG+ K  + H +R   AT    +G     +    G   V  
Sbjct: 249 RHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVST 308

Query: 319 AETYTK 324
              YT 
Sbjct: 309 TMIYTH 314


>gi|325495888|gb|EGC93748.1| shufflon-specific DNA reconbinase [Escherichia fergusonii ECD227]
          Length = 376

 Score = 93.2 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 37/215 (17%), Positives = 73/215 (33%), Gaps = 18/215 (8%)

Query: 121 SGVESRKHTPSSAIQF---LTSMRVLFKWA-VRQEYVAINPCLSVERPKRKTEGIRPWTK 176
           + +  R   P +       L  +  LF  A V       NP   V +PK  +   R  T 
Sbjct: 58  AEINPRTGKPITGNTVRLELALLSSLFNIARVEWGTCRTNPVELVRKPKVSSGRDRRLTS 117

Query: 177 EDMQQFKSFWSE-GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTGTII 233
            + ++   ++ E      + F   L + +R  +      +H+     +  +   K G   
Sbjct: 118 SEERRLSRYFREKNLMLYVIFHLALETAMRQGEILALRWEHIDLRHGVAHLPETKNGHSR 177

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKM--NATQFSIWFKAKATKAGV-NKSAHGVR 290
            V L       L M P       +N         A+ F   ++    +  + +   H +R
Sbjct: 178 DVPLSRRARNFLQMMP-------VNLHGNVFDYTASGFKNAWRIATQRLRIEDLHFHDLR 230

Query: 291 KFSATISADAG-ATAHELMATYGWKTVDQAETYTK 324
             + +   + G     E+ A  G ++++  + YT 
Sbjct: 231 HEAISRFFELGSLNVMEIAAISGHRSMNMLKRYTH 265


>gi|282877848|ref|ZP_06286660.1| site-specific recombinase, phage integrase family [Prevotella
           buccalis ATCC 35310]
 gi|281300059|gb|EFA92416.1| site-specific recombinase, phage integrase family [Prevotella
           buccalis ATCC 35310]
          Length = 409

 Score = 93.2 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 65/198 (32%), Gaps = 17/198 (8%)

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-----SEGSQPRL 194
           ++ + + A R+    I     V+  K   +  +   +   ++ K+        E    R 
Sbjct: 192 LKTVCRLAYREGLADILLFDKVKISKGNKKLPKALDRGAFEKLKTLHFEDLEEEMETARD 251

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVELPDGFMKLLAMTP 249
            F F  Y+G    D       HL  +           QKTG    V+L    ++L+    
Sbjct: 252 IFLFACYTGAAYCDLMELDKSHLVRDDEGSLWLKFNRQKTGVPCRVKLLPEAIRLMEKLH 311

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS-ADAGATAHE 306
             +    +      M    +  + KA   +AG+    + H  R   AT+   + G     
Sbjct: 312 SDERETLL----PFMGYATYQSYLKALRLRAGISFPFTTHTARHTFATLITLEQGVPIET 367

Query: 307 LMATYGWKTVDQAETYTK 324
           +    G   V   E Y K
Sbjct: 368 VSKMLGHSNVSMTERYAK 385


>gi|153815667|ref|ZP_01968335.1| hypothetical protein RUMTOR_01903 [Ruminococcus torques ATCC 27756]
 gi|145846908|gb|EDK23826.1| hypothetical protein RUMTOR_01903 [Ruminococcus torques ATCC 27756]
          Length = 376

 Score = 93.2 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 41/283 (14%), Positives = 84/283 (29%), Gaps = 38/283 (13%)

Query: 85  GSLAVNSRISF-ESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL 143
            ++  N+  ++ E Y   I    G+     +   H +                  +   L
Sbjct: 81  KTVRSNTVRNYTERYIKNIKPVIGEMPLSDVKPLHCQKIFYDMADQEYRTSTIYQARIAL 140

Query: 144 FK---WAVRQEYVAINPCLS-VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199
           +    +A   E +  NPC   V+    K    +     D+Q+    ++E       + F+
Sbjct: 141 YNMFEYAKENEVLCSNPCKKSVKSDMGKPSEKKVALTRDIQKTFLQYAENQSYENQYRFI 200

Query: 200 LYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ-----------------KTGTIITVELPDG 240
           L +GLR  +      + +   +    I+                   K+G   T+ L + 
Sbjct: 201 LQTGLRTGELVGLKWEDVDFKSKTIQIRRSMEYRYSAKEWRIGEPKSKSGYR-TIPLTEE 259

Query: 241 FMKLLAMTPIGKETF-----------FINNDKQKMNATQFSIWFKAKATKAGVNK-SAHG 288
            + +L       +             F+      +  + +         KA + + S H 
Sbjct: 260 AVAILKKQKEKNKRISEISTEWEEFVFLCRKGTPVKNSTYDTALFKICDKAKIPRFSMHI 319

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIR 330
           +R   AT   +AG     L    G   +      Y    +  +
Sbjct: 320 LRHTFATRCIEAGMKPKTLQMLLGHSNIGITMNLYVHTTEEEK 362


>gi|15808708|gb|AAL08437.1|AF326777_12 Tn21 integrase IntI1 [Shigella flexneri 2a]
          Length = 337

 Score = 93.2 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 41/306 (13%), Positives = 92/306 (30%), Gaps = 62/306 (20%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129
           ++ + R+   +   ++ +  ++  +    IR  G      + +  + + +      RK +
Sbjct: 16  VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75

Query: 130 PSSAIQFLTSMRVLFK--WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            S+  Q L ++   +         ++       + RP+         T +++ +      
Sbjct: 76  VSTHRQALAALLFFYGKVLCTDLPWLQ-----EIGRPRPSRRLPVVLTPDEVVRIHGIL- 129

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQH--LQNNIFSIKTQKTGTIITVELPDGFMKLL 245
           EG   RL  + L  +G+R S+  +  V+     +    ++  K      + LP+     L
Sbjct: 130 EGEH-RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSL 188

Query: 246 AMTPIGKETFFINN---------------------------------------------D 260
                    +++ +                                              
Sbjct: 189 REQLSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVR 248

Query: 261 KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           +  M    F   FK    +AG+ K  + H +R   AT    +G     +    G   V  
Sbjct: 249 RHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVST 308

Query: 319 AETYTK 324
              YT 
Sbjct: 309 TMIYTH 314


>gi|317057351|ref|YP_004105818.1| XRE family transcriptional regulator [Ruminococcus albus 7]
 gi|315449620|gb|ADU23184.1| transcriptional regulator, XRE family [Ruminococcus albus 7]
          Length = 465

 Score = 93.2 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 41/271 (15%), Positives = 85/271 (31%), Gaps = 42/271 (15%)

Query: 100 DQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL 159
           ++I    G    +          +     TP +   +++ +  +F +A++ + ++ NPC 
Sbjct: 184 EKINAALGQPLAKTFDRIKTEKAL-----TPKTIKNYVSFISSVFDYAIKIKAISDNPCK 238

Query: 160 SVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQH 216
           +   PK   +    +T E  +QF         P   R  F+  L+ G R  +        
Sbjct: 239 NAVLPKIPQKEHTMFTIEQAKQFLDILDLPETPVKYRAFFQLALFGGFRRGEILGLEWSD 298

Query: 217 L--QNNIFSIKTQ--------------KTGTIIT-VELPDGFMKLLAMTPIGK------- 252
           +     +  I+                K+   +  + LP+  +  L      +       
Sbjct: 299 IDFDTGVIHIRRTVHYSKELGYYDTEPKSKKSVRALTLPENVIFTLKQLRNDQNSQRLIL 358

Query: 253 -------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATA 304
                  E  F + D  +MN      W         + K + H  R  +A++   +G   
Sbjct: 359 GDKWHNTERLFTSWDGHQMNGASPFGWLTKICAAYDLPKVNLHSFRHLNASLLISSGVDV 418

Query: 305 HELMATYGWKTVDQA-ETYTKG-ADRIRLGI 333
             + +  G        + Y     DR    +
Sbjct: 419 KTVQSVLGHSQASTTLDIYAAAFQDREAQAL 449


>gi|282892190|ref|ZP_06300661.1| hypothetical protein pah_c212o013 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281497924|gb|EFB40272.1| hypothetical protein pah_c212o013 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 313

 Score = 93.2 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 50/292 (17%), Positives = 102/292 (34%), Gaps = 30/292 (10%)

Query: 71  LKWLISEYRKSAHWGSLAVNS-RISFESYFDQIIRKSGDFDYRKITTKH---IRSGVESR 126
            + LI  +  S    + + ++ +   + +F+ +  +       K+T +     +  +   
Sbjct: 19  FEDLIERFISSIDAKANSKDTYKRQIKPFFEWVSERYSFNSLHKMTQQDIFAYKEFLVRD 78

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP--WTKEDMQQ--- 181
             +  +   +LT++R  F+W +    +  N   SV+  K K +G R    T E ++    
Sbjct: 79  GKSAYTISGYLTAVRKFFEW-LESNKIFPNIAKSVKGLK-KPKGFRKDCLTVEQIRTALS 136

Query: 182 -FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---NNIFSIKTQKTGTIITVEL 237
            F    S+G +    F  L+ +GLR  +  RA V  L+            K        +
Sbjct: 137 SFDVETSDGLRDYALFNLLVRTGLRTVEISRATVGDLRQESGEAILQIQGKGRDSKDDFV 196

Query: 238 P------DGFMKLL--AMTPIGKETFF----INNDKQKMNATQFSIWFKAKATKAGVN-- 283
                      K L        K+  F       + + +     S   K    +  ++  
Sbjct: 197 LLVDETLRPLRKYLASRGALSEKDPLFSSTSNRTNGEPLKERTISWIIKETLRRIDIDDS 256

Query: 284 -KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIK 334
             +AH +R  + ++S   GA+  +  A            Y    +RI+ G +
Sbjct: 257 RLTAHSLRHTAVSLSIKNGASLIQAQAMARHSDPKTTMIYFHNHERIKSGAE 308


>gi|297559217|ref|YP_003678191.1| integrase family protein [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296843665|gb|ADH65685.1| integrase family protein [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 289

 Score = 93.2 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 34/266 (12%), Positives = 84/266 (31%), Gaps = 21/266 (7%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRV- 142
             + ++   + +    ++    +     R +    +R  +   +   +S       +   
Sbjct: 14  GRSPHTVRGYLADLRSLLAHLEERGRSVRDLDVDLVRGWLSRARDAGASRATVARRVAAV 73

Query: 143 --LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAF 196
               ++  R+  +A +P   +  P ++        +       +  +EG+    + R   
Sbjct: 74  RAFTRFLHREGVLAADPGPRLASPAQQRSLPTVLDERQAAAALAGETEGTPTGLRRRAVV 133

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-----IITVELPDGFMKLL------ 245
           E L  +G+R ++ C   +  +     +++    G       +     D     L      
Sbjct: 134 ETLYATGVRVAELCALDLADVDRERDTVRVLGKGAKERTVPVGGPALDALDAWLSGGRPE 193

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAH 305
                     F+     ++   Q      A     G + + HG+R  +AT   + GA   
Sbjct: 194 MAGATSGSALFLGARGGRLGVRQAREDVHAHLRAVGADSAPHGLRHSAATHLLNGGADLR 253

Query: 306 ELMATYGWKTVDQAETYTK-GADRIR 330
            +    G  +    + YT    +R+R
Sbjct: 254 SVQEFLGHASPRSTQIYTHVSVERLR 279


>gi|167823920|ref|ZP_02455391.1| Integrase [Burkholderia pseudomallei 9]
          Length = 271

 Score = 93.2 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 45/265 (16%), Positives = 93/265 (35%), Gaps = 17/265 (6%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           T+  L + Y K+   G   V         F +  +K       K+   H+    + R   
Sbjct: 3   TVGDLFARYIKAPLPGRRNVEWERGICRRFIRNEKKLCAVPAAKLDKPHLVEWRDRRIGE 62

Query: 130 PSS--AIQFLTSMRVLFKWAVRQEY---VAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
            +S   I+ L ++  +++ A+  E+   + INP   + RPK            D ++  +
Sbjct: 63  VASSTVIRELDAISAVYRLAID-EWAVGLTINPTKGLRRPKLPPPRDVRLAIGDDEKLIA 121

Query: 185 FWSEGSQPRL-AFEFLLYSGLRCSDSCRAGVQHLQNNIFSI--KTQKTGTIITVELPDGF 241
              + ++    A    + + +R  +  +   +H+     ++     K GT   V L    
Sbjct: 122 SAIDYNREIAPAIVLAIETAMRQGEIAKLRWEHIDLEAQTVLLPMTKNGTPRKVPLSSRA 181

Query: 242 MKLLA-MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISAD 299
           ++ L    P  +   F      K+  +     F     + G+     H +R  + +   +
Sbjct: 182 IEALTWCPPPHRGRVF------KLTQSAMKYAFSRVREECGLGTIHFHDLRHEATSRLFE 235

Query: 300 AGATAHELMATYGWKTVDQAETYTK 324
            G    E+    G K +   + YT 
Sbjct: 236 KGLNVLEVATITGHKNLKHLQRYTH 260


>gi|77562727|gb|ABB00017.1| class 1 integrase [Pseudomonas aeruginosa]
          Length = 323

 Score = 93.2 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 42/306 (13%), Positives = 93/306 (30%), Gaps = 62/306 (20%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129
           ++ + R+   +   ++ +  ++  +    IR  G      + +  + + +      RK +
Sbjct: 16  VLDQLRERIRYLHYSLPTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75

Query: 130 PSSAIQFLTSMRVLFK--WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            S+  Q L ++   +         ++       + RP+         T +++ +   F  
Sbjct: 76  VSTHRQALAALLFFYGKVLCTDLPWLQ-----EIGRPRPSRRLPVVLTPDEVVRILGFL- 129

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQH--LQNNIFSIKTQKTGTIITVELPDGFMKLL 245
           EG   RL  + L  +G+R S+  +  V+     +    ++  K      + LP+     L
Sbjct: 130 EGEH-RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSL 188

Query: 246 AMTPIGKETFFINN---------------------------------------------D 260
                    +++ +                                              
Sbjct: 189 REQLSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVR 248

Query: 261 KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           +  M    F   FK    +AG+ K  + H +R   AT    +G     +    G   V  
Sbjct: 249 RHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVST 308

Query: 319 AETYTK 324
              YT 
Sbjct: 309 TMIYTH 314


>gi|115522315|ref|YP_779226.1| site-specific tyrosine recombinase XerC [Rhodopseudomonas palustris
           BisA53]
 gi|115516262|gb|ABJ04246.1| tyrosine recombinase XerC subunit [Rhodopseudomonas palustris
           BisA53]
          Length = 342

 Score = 93.2 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 42/290 (14%), Positives = 86/290 (29%), Gaps = 34/290 (11%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQ----IIRKSGD----FDYRKITTKHIRSGVES 125
           I  +         L+  +  ++     Q    +    G       + K+    +R+ + S
Sbjct: 43  IVRWLGHLRAERRLSPKTLEAYARDLRQFLGFLCEHWGTQVSVARFAKLEAGDVRAFMAS 102

Query: 126 RKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           R+       S ++ L  +R   ++  R+    +    ++  PK      +P      ++ 
Sbjct: 103 RRADAIGGRSLMRALAGLRSFGRFLEREGKGKVGALSAIRAPKVGKTLPKPIQIASAKRL 162

Query: 183 KSFWSEGSQPR---------LAFEFLLYSGLRCSDSCRAGVQHL---QNNIFSIKTQKTG 230
                   + R              L  SGLR S++     + +         I T K  
Sbjct: 163 TDPDERAGEERENWILVRDAAVMALLYGSGLRISEALGLKRRDVPLPGQGDTLIVTGKGN 222

Query: 231 TIITVELPDGF----MKLLAMTP---IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
               V +           +A+ P         F+      ++     +  +      G+ 
Sbjct: 223 KTRMVPVLQSVLQSVADYVAICPHPLAADRAIFVGARGGPLSPRIIQLTMERMRGALGLP 282

Query: 284 --KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
              + H +R   AT     G     +    G  ++   + YT G D  RL
Sbjct: 283 DSATPHALRHSFATHLLSRGGELRAIQELLGHASLSTTQIYT-GIDSERL 331


>gi|312890070|ref|ZP_07749614.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
 gi|311297602|gb|EFQ74727.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
          Length = 405

 Score = 93.2 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 51/288 (17%), Positives = 101/288 (35%), Gaps = 25/288 (8%)

Query: 66  KKPTTLKWLISEY---RKSAHWGSLAVNSRISFE------SYFDQIIRKSGDFDYRKITT 116
           +K  TL  +  ++    KS        ++   +E        F +      D    KI  
Sbjct: 104 EKARTLVAIFEDHNARMKSLVGQEFEKSTLQRYETCLMHTKDFMEWQYNLSDIPVNKINF 163

Query: 117 KHIRSG----VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
             +          RK   +SAI+++ ++  + +  +   ++ ++P L+ + PK+K     
Sbjct: 164 AFLNDFEYYLRSVRKCGNNSAIKYIKNLGKIVRICLGNGWLTVDPYLNYK-PKQKAVHRE 222

Query: 173 PWTKEDMQQFKSF---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----IFSI 224
             TKE++++            Q R  F F  Y+GL   D  +     L            
Sbjct: 223 VLTKEELERMSKKKFGVQRLDQVRDVFLFSCYTGLAYVDVHKLKRSELVTGIDGGLWIHT 282

Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284
             QKT T+  + +    + ++       E    +     M   + + + K  A    +NK
Sbjct: 283 HRQKTDTLSRIPVLSRALSIIKSYENHPECIVKDTLLPVMTNQKMNAYLKEIADLCRINK 342

Query: 285 --SAHGVRKFSAT-ISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             + H  R   AT ++ + G     +    G  ++   + Y K  D  
Sbjct: 343 VLTFHIARHTFATTVTLNNGVPIETVAKMMGHTSIKTTQIYAKVMDHK 390


>gi|289644810|ref|ZP_06476863.1| integrase family protein [Frankia symbiont of Datisca glomerata]
 gi|289505366|gb|EFD26412.1| integrase family protein [Frankia symbiont of Datisca glomerata]
          Length = 404

 Score = 93.2 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 44/327 (13%), Positives = 94/327 (28%), Gaps = 42/327 (12%)

Query: 52  TGSTPKREYINSPRKKPTTLKWLISEYRKS-AHWGSLAVNSRISFESYFDQII---RKSG 107
            G T         R+   +    +S Y +  A     +  +  ++ +    +    ++ G
Sbjct: 74  RGDTGVSRAAGVCREAEVSWDVAVSAYLRHLATERDRSPETVRAYRADLAHLRGYAQEVG 133

Query: 108 DFDYRKITTKHIRSGVESRKHTPSSAIQFL---TSMRVLFKWAVRQEYVAINPCLSVERP 164
                 +    +R  +   +   ++A       +  R    +A RQ ++A +    +  P
Sbjct: 134 LDGPTGVDLGVLRGWLAGMRARGAAATTLARRASVARGFSAFAARQGWLAADVAERLAGP 193

Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGS---------------------QPRLAFEFLLYSG 203
           +R        T     +  +                           +     E L  + 
Sbjct: 194 RRPASLPTVLTAAQAWELLAARPRPLPDGGDPPAAGQSAAGQSAVVVRDDAVLELLYATA 253

Query: 204 LRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-----VELPDGFMKLLAMT------PIGK 252
            R S+ C   +  + +    ++ +  G         V         LA            
Sbjct: 254 TRVSELCGLDIDDVDDERRLVRVRGKGGRERAVPFGVPAQRALRNWLAAGRPTLAVAGSG 313

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKA-GV-NKSAHGVRKFSATISADAGATAHELMAT 310
              F+    ++++         A+   A G+   S HG+R  +AT     GA    +   
Sbjct: 314 RALFLGVRGRRLDPRTVRRILAARTATADGIGPISPHGIRHSAATHLLAGGADLRSVQEF 373

Query: 311 YGWKTVDQAETYTK-GADRIRLGIKNS 336
            G  +    + YT     R+R   + S
Sbjct: 374 LGHASPATTQIYTHVTPQRLRAAFEQS 400


>gi|256851408|ref|ZP_05556797.1| Lj965 prophage integrase [Lactobacillus jensenii 27-2-CHN]
 gi|260660829|ref|ZP_05861744.1| Lj965 prophage integrase [Lactobacillus jensenii 115-3-CHN]
 gi|282933142|ref|ZP_06338529.1| prophage integrase [Lactobacillus jensenii 208-1]
 gi|256616470|gb|EEU21658.1| Lj965 prophage integrase [Lactobacillus jensenii 27-2-CHN]
 gi|260548551|gb|EEX24526.1| Lj965 prophage integrase [Lactobacillus jensenii 115-3-CHN]
 gi|281302646|gb|EFA94861.1| prophage integrase [Lactobacillus jensenii 208-1]
          Length = 375

 Score = 93.2 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 56/363 (15%), Positives = 128/363 (35%), Gaps = 43/363 (11%)

Query: 13  KERTRHGKIIYYFRKGHGRRI-RLPYPHESTFIPAYMSALTG--STPKREYINSPRKKPT 69
           +   ++G+  Y F+   GR I R+          ++  A             +  ++K  
Sbjct: 11  EYTLKNGEKRYMFKIFLGRNINRIKKETTRRGFKSFAEAEEAYNHLNIENVNDFVKQKQI 70

Query: 70  TLKWL----ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
           T+  +     + YR +    S A  + I++  +        G+    KI+ + ++   + 
Sbjct: 71  TINQMYEIWFARYRTTVK-ESTANKTAINYRVHIKPF---FGNAYMDKISVRDVQLWADK 126

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-----PWTKEDMQ 180
                      +  +R  +++A+R  YV+INP  S+  P + +   R      +++++++
Sbjct: 127 LATKLVKFNDPIFILRSFYEYAIRMNYVSINPVGSIIMPVKTSRPRRNVEDNVYSRKELE 186

Query: 181 QFKSFWSE-GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----------------NNIFS 223
            F     E   +    F+ L  +GLR S++       +                 +N   
Sbjct: 187 LFLQVAKEYNLRAYTYFKLLASTGLRKSEALALTWSDIDFINGVIDVNKTLAVGLDNKVQ 246

Query: 224 IKTQKTGTIIT-VELPDGFMKLLAMTPIG----KETFFINNDKQKMNATQFSIWFKAKAT 278
           ++  K+ + I  V +      +L              F     + ++ ++   W +A   
Sbjct: 247 VQPPKSKSSIRQVPISANLANVLNEYKNSEKILSAKVFHTYTGKYLSLSKPMKWLEAIYN 306

Query: 279 KA--GVNK-SAHGVRKFSATIS-ADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGI 333
           KA   +   + HG R   AT+  ++       +    G   +    + YT   ++ +   
Sbjct: 307 KAPKDLKHITVHGFRHTFATLLISETNVKPKTVQMLLGHSNIQMTLDIYTHINNKNKKEA 366

Query: 334 KNS 336
            N 
Sbjct: 367 VNV 369


>gi|237741434|ref|ZP_04571915.1| site-specific recombinase [Fusobacterium sp. 4_1_13]
 gi|237745172|ref|ZP_04575653.1| site-specific recombinase [Fusobacterium sp. 7_1]
 gi|294785953|ref|ZP_06751241.1| site-specific recombinase, phage integrase family [Fusobacterium
           sp. 3_1_27]
 gi|229429082|gb|EEO39294.1| site-specific recombinase [Fusobacterium sp. 4_1_13]
 gi|229432401|gb|EEO42613.1| site-specific recombinase [Fusobacterium sp. 7_1]
 gi|294487667|gb|EFG35029.1| site-specific recombinase, phage integrase family [Fusobacterium
           sp. 3_1_27]
          Length = 396

 Score = 93.2 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 37/292 (12%), Positives = 86/292 (29%), Gaps = 47/292 (16%)

Query: 93  ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFL----TSMRVLFKWAV 148
              +   ++   +  + D   +T  +I            +    +      +R  F  A 
Sbjct: 106 KDQQRIIEKFFSQK-NLDLEAVTVANILDFYNHLSIVRKNTNNTIIHYHALLRKTFTEAH 164

Query: 149 RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD 208
            ++ +  N  L + RPK++      +  +++  F ++   G +  L     L+ G R S+
Sbjct: 165 IRKLIKENIMLEIPRPKKEKYISEVFNLKEINTFLNYIK-GHKFELELNLALFYGFRRSE 223

Query: 209 SCRAGVQ--HLQNNIFSIKT-------------QKTGTIITVELPDGFMKL------LAM 247
                       NN   + T             QK     +  +      +         
Sbjct: 224 LLGLRFSVIDFDNNTILVNTKITSSEEEKLVAKQKMKNDSSYRIMPLLASIKELIIQRME 283

Query: 248 TPIGKETFFINNDKQKM-------------NATQFSIWFKAKATKAGVNK-SAHGVRKFS 293
                + FF ++  +K                 + +  F+    + G+ K   H +R   
Sbjct: 284 RIKKDKNFFKSSYTKKWEGFICVGEDGELIKPDRVTKTFRRLIKECGLKKIRLHDLRHSC 343

Query: 294 ATISADAGATAHELMATYGWKTVDQAET------YTKGADRIRLGIKNSRRI 339
           AT+  +      ++    G   +           YT+      +  K+ + +
Sbjct: 344 ATLLYEQDIQLKDIQMWLGHSDIQTTANIYSHFDYTRKEKTGEIIEKSLKNL 395


>gi|126466056|ref|YP_001041165.1| phage integrase family protein [Staphylothermus marinus F1]
 gi|126014879|gb|ABN70257.1| phage integrase family protein [Staphylothermus marinus F1]
          Length = 333

 Score = 93.2 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 45/269 (16%), Positives = 89/269 (33%), Gaps = 24/269 (8%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE-SRKHTP 130
           K ++ E+  +      + ++  ++ S     +   G+   R IT + I        KH  
Sbjct: 20  KDILEEFIFTLEAAGASEDTIKAYRSAIKDFLEFLGEKPLRDITLRDIILWRNYRLKHGF 79

Query: 131 SSAIQ-----FLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
           S A       + T++     +  R  E++ +N    + R ++    I     E++ +   
Sbjct: 80  SKAKTKDKKKWQTTLHYYSMFLNRFFEWLGLN--FRIPRIRKPPRKIHVLNDEEVHKLLE 137

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFM 242
              +    +L    LL +GLR  +     V  +   N   +I + K      V +    M
Sbjct: 138 SIRDPL-DKLILSILLDTGLRSKELLGIRVSDIDFENRTITITSTKYDKERKVLVTSRTM 196

Query: 243 KLLAMTPI----GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSAT 295
           +L+          KE   I      +  +      K    +A +       H +R   AT
Sbjct: 197 ELIRSWIKLNNLEKEDRLI-----PLTYSGLYKRIKRLGRRASIPAWKIRPHILRHTFAT 251

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTK 324
            +   G +   L    G   +   + Y  
Sbjct: 252 QALRKGLSLPYLQRLLGHSDIKTTQIYLH 280


>gi|167762101|ref|ZP_02434228.1| hypothetical protein BACSTE_00451 [Bacteroides stercoris ATCC
           43183]
 gi|167700060|gb|EDS16639.1| hypothetical protein BACSTE_00451 [Bacteroides stercoris ATCC
           43183]
          Length = 406

 Score = 93.2 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 46/275 (16%), Positives = 97/275 (35%), Gaps = 26/275 (9%)

Query: 90  NSRISFE---SYFDQIIRK---SGDFDYRKITTKHIRSGVESRKH----TPSSAIQFLTS 139
            +   +E    Y ++ I+K     D     +    I       K       +SAI  L +
Sbjct: 132 KTVQRYETTTRYLEEFIKKEYQLSDIALNNLEANFISKFDAFLKIEKGCAQNSAITRLKN 191

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLAF 196
           ++ + + A+  +++  +P  +  R K +       T + ++   +         Q R  F
Sbjct: 192 LKKIIRIALENDWIKKDP-FAYYRFKLEETDPEFLTMDKIKIIITKEFTIKRVEQVRDVF 250

Query: 197 EFLLYSGLRCSDSCRAGVQH-LQNN----IFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251
            F +++GL  SD      +H +++N          QKT  +  + +      +L      
Sbjct: 251 VFCIFTGLAFSDVKDLSPEHLVKDNKGELWIRKNRQKTKIMCNIPVLPMAASILEKYKNV 310

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS-ADAGATAHELM 308
            E          +   + + + K  A   G++K  S H  R   AT      G +   + 
Sbjct: 311 AE--CTGKLLPVLCNQRMNSYLKEIADVCGIHKNLSTHTARHSYATSICLANGVSMENVA 368

Query: 309 ATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343
              G       + Y +  D+     K+ ++++S +
Sbjct: 369 KMLGHADTSVTKHYARVLDQN--IFKDMQKVNSCL 401


>gi|50121562|ref|YP_050729.1| phage integrase [Pectobacterium atrosepticum SCRI1043]
 gi|49612088|emb|CAG75538.1| phage integrase [Pectobacterium atrosepticum SCRI1043]
          Length = 328

 Score = 93.2 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 44/238 (18%), Positives = 76/238 (31%), Gaps = 17/238 (7%)

Query: 96  ESYFDQII---RKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVR 149
           +   + II    + G     ++T K I     +R      PSS  +    +  +F   + 
Sbjct: 83  KGRLNAIIVKLAEVGVIRADQLTKKAILDYRVNRLNEGLKPSSVNRHHAILSGMFTKLIE 142

Query: 150 -QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD 208
             EY + +P   V++ K +   +   T  +++            R A    L +G R  +
Sbjct: 143 ADEYHSQHPFKDVKQLKEQQAEMAFLTAGEIEDLLQLLD--GDNRKAVLVCLATGGRWGE 200

Query: 209 SCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ 268
                 +H+ NN+ +    K G   T+ +    M  +     G   F         N   
Sbjct: 201 VANLKCEHIINNMLTFMKTKNGKRRTIPISPALMTQIKHAKTG---FVC-----HPNYDA 252

Query: 269 FSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
                +A        ++ H  R   AT     G     L    G  T+ Q   Y   A
Sbjct: 253 VRNTLRAMKPDLPDGQALHVFRHTFATHFMMNGGNIITLQRILGHSTIQQTMVYAHFA 310


>gi|298251414|ref|ZP_06975217.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
 gi|297546006|gb|EFH79874.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
          Length = 350

 Score = 93.2 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 45/318 (14%), Positives = 90/318 (28%), Gaps = 66/318 (20%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG-----DFDYRKITTKHIRSG--- 122
              L+  Y  S         ++ +  S   Q            FD  ++  + +R+    
Sbjct: 2   FDHLLERYVASLTTAGKTPATQRAIRSDLAQFCAWWEQMHQRPFDLTQVVERDLRAWKTV 61

Query: 123 -VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
             +     P++  + L+++R L  WAV Q+ +  NP   V          R      +  
Sbjct: 62  RQQEEGAAPATINRGLSTLRRLCTWAVEQQLLTENPVKDVADIPSTPVSPRSLPDLAVDA 121

Query: 182 FKSFWSEGSQPRLA------FEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTII 233
                      RL          L+Y+G+R  ++C   ++ L   +    +++ K G   
Sbjct: 122 LLRATRAEPDLRLRLRDEALLALLVYAGVRIQEACDLQLRDLDLASGTLVVRSGKGGKAR 181

Query: 234 TVELPDGFMKLLAM-----------TPIGKE---TFFINN-----DKQKMNATQFSIWFK 274
            + +     + L+             PIG E   T  +         + +     +   +
Sbjct: 182 RLPVHSEAQRALSRYLQEVRCPEGLPPIGSEQERTPLLVGMQRAVAGRPLAPGIKTRVAR 241

Query: 275 AKATKAG------------------------------VNKSAHGVRKFSATISADAGATA 304
            +  + G                                 + H +R   A      GA  
Sbjct: 242 QRIAQLGKVAATQLEEAATRERDLARAEQLRACVLQLETAAPHQLRHSFARRMLKTGAQL 301

Query: 305 HELMATYGWKTVDQAETY 322
            E+    G   +     Y
Sbjct: 302 PEVQRMLGHSRLSTTGIY 319


>gi|45673|emb|CAA31355.1| unnamed protein product [Plasmid pLMO20]
          Length = 337

 Score = 93.2 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 42/306 (13%), Positives = 93/306 (30%), Gaps = 62/306 (20%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129
           ++ + R+   +   ++ +  ++  +    IR  G      + +  + + +      RK +
Sbjct: 16  VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75

Query: 130 PSSAIQFLTSMRVLFK--WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            S+  Q L ++   +         ++       + RP+         T +++ +   F  
Sbjct: 76  VSTHRQPLPALLFFYGKVLCTDLPWLQ-----EIGRPRPSRRLPVVLTPDEVVRILGFL- 129

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQH--LQNNIFSIKTQKTGTIITVELPDGFMKLL 245
           EG   RL  + L  +G+R S+  +  V+     +    ++  K      + LP+     L
Sbjct: 130 EGEH-RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSL 188

Query: 246 AMTPIGKETFFINN---------------------------------------------D 260
                    +++ +                                              
Sbjct: 189 REQLSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVR 248

Query: 261 KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           +  M    F   FK    +AG+ K  + H +R   AT    +G     +    G   V  
Sbjct: 249 RHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVST 308

Query: 319 AETYTK 324
              YT 
Sbjct: 309 TMIYTH 314


>gi|313105646|ref|ZP_07791910.1| putative bacteriophage integrase [Pseudomonas aeruginosa 39016]
 gi|310878412|gb|EFQ37006.1| putative bacteriophage integrase [Pseudomonas aeruginosa 39016]
          Length = 328

 Score = 93.2 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 51/316 (16%), Positives = 96/316 (30%), Gaps = 24/316 (7%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEY 78
           G+         G+R R  +      +  + + +   T +        K    L  L+  +
Sbjct: 9   GRWFVDVEPIKGKRFRKRF-KTKGEVQRFEATVRQRTIENSAWTPKPKDRRRLSELVQLW 67

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQ 135
               H  SL    R   +    Q+  + GD     +      S    R     +  +   
Sbjct: 68  Y-DLHAHSLRDAPRRLSKPL--QLAARLGDPIATALDASSYASLRRKRLEEGISGKTLNN 124

Query: 136 FLTSMRVLFKWAVRQEYVA-INPCLSVERPKRKTEGIRPWTKEDM----QQFKSFWSEGS 190
            L  +R +F        +   NP   V+  K +   +   T E +       ++      
Sbjct: 125 ELGYIRAVFNELKDLGQIDYDNPLAGVKLLKLQEGELSWLTTEQIGELLDSIRNRCD-NP 183

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM-TP 249
              L     L +G R S++ +   Q LQ N+ +    K+G +  V +P      +    P
Sbjct: 184 HTELVTLLCLATGARWSEAEKLPAQRLQGNVVTYAGTKSGKVRHVPIPAELADRVRAHWP 243

Query: 250 IGKE-TFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELM 308
           +    T  I + ++ +  T   +              +H +R   A+     G     L 
Sbjct: 244 MHGPFTSCITSFRRALERTTIQLPQGQA---------SHALRHTFASHFMMNGGNILTLQ 294

Query: 309 ATYGWKTVDQAETYTK 324
              G  T+     Y  
Sbjct: 295 KILGHSTLTMTMRYAH 310


>gi|255319001|ref|ZP_05360224.1| putative integrase/recombinase protein [Acinetobacter
           radioresistens SK82]
 gi|255303928|gb|EET83122.1| putative integrase/recombinase protein [Acinetobacter
           radioresistens SK82]
          Length = 339

 Score = 93.2 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 46/282 (16%), Positives = 89/282 (31%), Gaps = 20/282 (7%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD 110
           L+     ++ I    K     + L ++Y +       +  +        D+I     D  
Sbjct: 42  LSELRSGKKAIEQGEKPKYLFRDLCAKYYQEHGRHMRSARTINFKIKNLDRIAPNLADKS 101

Query: 111 YRKITTKHIRSGVESRKH--TPSSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRK 167
                   I     +RK     ++          +F +A+++   +  N   SV  P ++
Sbjct: 102 IYDFKPADIAEWRNNRKKEVKVATLRNEHAIYSAVFTYAMKELFLIESNVWHSVTMPGKE 161

Query: 168 TEGIRPWTKEDMQQFKSF--WSEGSQPRL-------AFEFLLYSGLRCSDSCRAGVQHLQ 218
               +  T+ED         W   + P +       AF F L + +R  +      Q+++
Sbjct: 162 KSRSQRITEEDQALMLKSLSWDGTTTPEISRHYVAWAFLFALETAMRQGEILAMKRQNIK 221

Query: 219 NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKAT 278
                +   K G    V L     +LL + P        N     ++  +F   +     
Sbjct: 222 EGFVHLPVTKNGDSRNVPLSKEAKRLLVLLPK------TNKQLVPLDKDRFCATWMRAKK 275

Query: 279 KAGVNK-SAHGVRKFSATISADAGA-TAHELMATYGWKTVDQ 318
           +AG+   + H  R  + T            L    G KT+  
Sbjct: 276 RAGLPHINFHDSRHEAITRMVKVRKLPVEVLAKITGHKTISM 317


>gi|225871254|ref|YP_002747201.1| integrase [Streptococcus equi subsp. equi 4047]
 gi|225700658|emb|CAW95231.1| putative integrase [Streptococcus equi subsp. equi 4047]
          Length = 405

 Score = 93.2 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 63/364 (17%), Positives = 110/364 (30%), Gaps = 82/364 (22%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEY 78
           GK  YY ++G   R                +A    T     +NS      T   L ++ 
Sbjct: 26  GKKKYYTKRGFKTR---------------KAAKAHETAVNHQLNS-----GTFAHLTAQ- 64

Query: 79  RKSAHWGSLAVNSRISFESYFD----------------QIIRKSGDFDYRKITTKHIRSG 122
             +  +  L    +  +E+Y D                 I+   G+    KI+    ++ 
Sbjct: 65  -TTYTYQEL---YQRWYEAYKDTVETTTAAKTADLYRLHILPTFGEKKISKISPLDCQTF 120

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-PWTKEDMQQ 181
           +  +  +  +  Q  +     F++A+   ++  NP   V  PK K       WT  ++  
Sbjct: 121 ITDKAKSFKNMKQIKSYTSKTFEFAINMNHIERNPMSKVIMPKLKKTVSENYWTVNELHH 180

Query: 182 FKSFWSEGS--QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT----- 234
           F +   E    +    F  L YSGLR  +      +   +    +   K+   I      
Sbjct: 181 FLTIILENEPYKHYALFRLLAYSGLRKGELYALKWEDFDSENQLLTVSKSLGRIDGHAIE 240

Query: 235 -----------VELPDG----FMKLLAMTPIGKETF--------------FINNDKQ--K 263
                      + L D       K    T   K                 + N D +   
Sbjct: 241 KGTKNTFSVRSIYLDDETCSILNKWKQETSKEKGQLSVQPLSLDKEFMFTYCNRDGEIEP 300

Query: 264 MNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ET 321
           ++A   +   K    K  + K S HG R   AT+  + G          G  +     +T
Sbjct: 301 LHADYINNILKRIIRKHNLKKISPHGFRHTHATLMIEMGIDPVNTAKRLGHASSQMTLDT 360

Query: 322 YTKG 325
           Y+  
Sbjct: 361 YSHS 364


>gi|229829883|ref|ZP_04455952.1| hypothetical protein GCWU000342_01989 [Shuttleworthia satelles DSM
           14600]
 gi|229791181|gb|EEP27295.1| hypothetical protein GCWU000342_01989 [Shuttleworthia satelles DSM
           14600]
          Length = 405

 Score = 93.2 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 57/402 (14%), Positives = 113/402 (28%), Gaps = 72/402 (17%)

Query: 13  KERTRHGKIIYYFRKGHGRRI-------RLPYPHESTFIPAYM---------------SA 50
           K R R G+I+   R G  +R         +    E+ FI ++                + 
Sbjct: 4   KRRDRKGRIL---RTGESQRKDGRYLYKYIDSFGETQFIYSWKLVSTDRVPAGKRDCIAL 60

Query: 51  LTGSTPKREYINSPRKKPTTLKWLISEY-RKSAHWGSLAVNSRISFESYFDQII-RKSGD 108
                  ++ +            L   Y +++A   ++  N++   +   + +   K G 
Sbjct: 61  REKIAEIQKDVQDGIDVIGKKMTLCQLYAKQNAQRPNVKANTKTGRKYLMEILKNDKLGA 120

Query: 109 FDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCL-SVERP 164
                I     +             S+   +  S+R  F  A++ +YV  NP    +   
Sbjct: 121 RSIDSIKPSDAKEWAIRMSENGFAYSTINNYKRSLRASFYIAIQDDYVRKNPFDFQLNTV 180

Query: 165 KRKTEGIRP-WTKEDMQQFKSFWSEGSQPRLAFE---FLLYSGLRCSDSCRAGVQHLQ-- 218
                  +   T E   +   F    +     ++    LL +GLR S+ C   V  L   
Sbjct: 181 IDDDTVPKTILTLEQEARLLDFAKSDTVYHKNYDEILILLKTGLRISELCGMTVTDLDFE 240

Query: 219 ----------------NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET-------- 254
                                    K+       +      L  +  +  +         
Sbjct: 241 NHLILVNHQLLRNTELGYYIETPKTKSSERQVPMVEVTCQALKRVLAVQNQNECVEIDGY 300

Query: 255 ---FFINNDKQKMNATQFSIWFKA------KATKAGVNK-SAHGVRKFSATISADAGATA 304
               F+N +     A  F+   +       K  +  +   + H +R    T  A+AG   
Sbjct: 301 SNFLFLNRNGYPKTACDFNSILRNLIKKYNKCHEEKLPHITPHTLRHTFCTNCANAGMNP 360

Query: 305 HELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346
             L    G   +     Y   A      ++  +R+     + 
Sbjct: 361 KALQYIMGHANITMTLNYYAHAT-CNSAMEEMKRLEKEQQAR 401


>gi|78485177|ref|YP_391102.1| Phage integrase [Thiomicrospira crunogena XCL-2]
 gi|78363463|gb|ABB41428.1| Tyrosine recombinase family protein [Thiomicrospira crunogena
           XCL-2]
          Length = 341

 Score = 93.2 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 42/237 (17%), Positives = 80/237 (33%), Gaps = 13/237 (5%)

Query: 97  SYFDQIIRKSGDFDYRKITTKHIRSGVESR-KHTPSSA--IQFLTSMRVLFKWAVRQEYV 153
           S F  + R  G     +I   H+   +++R K   S+A   + L  +R +   A ++  V
Sbjct: 80  SIFKYLDRYFGHLYVDEIRRMHVDEIIQTRLKEGVSNATINRLLQKLRAVLNKAHKEWEV 139

Query: 154 AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG 213
             +P   ++  K   + +R W   + +  +   +            L +GLR S+     
Sbjct: 140 KCDPPY-IKLLKEPKKRVR-W-LAEPEALRLINALPEYIADMATLALETGLRESNVTLLK 196

Query: 214 VQHLQ--NNIFSIKTQ---KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ 268
            + +     I  I+     K+     V L D  ++++        T         +    
Sbjct: 197 WEQIDFSQRIIYIEGDDILKSEQAFVVPLSDTAVEVIKRQVGKHPTRVFTFRGDPIRRAN 256

Query: 269 FSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            +  FK    + G+ +   H +R   AT     G     L    GW      + Y  
Sbjct: 257 -TKAFKNTCAELGIEDFRWHDLRHTWATWHVQRGTPLEVLQELGGWTDYKMVKRYAH 312


>gi|315038770|ref|YP_004032338.1| phage integrase family protein [Lactobacillus amylovorus GRL 1112]
 gi|312276903|gb|ADQ59543.1| phage integrase family protein [Lactobacillus amylovorus GRL 1112]
          Length = 322

 Score = 93.2 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 41/297 (13%), Positives = 107/297 (36%), Gaps = 17/297 (5%)

Query: 57  KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT 116
           KR   + P KK  + +  ++++ ++      +  +   ++   +Q+++K      RK+TT
Sbjct: 30  KRLVKDEPEKKMISNQEYLNKFLEAKKIEGCSERTIKYYKVTVEQLLKKVLH-PIRKVTT 88

Query: 117 KHIRSGVESRKH----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
           + +R  +   +       ++      ++   F W   ++Y+  +P   + + + +     
Sbjct: 89  EQMREYLVDYQKINNCGKTTIDNVRRNISSFFSWLEEEDYILKSPMRRIHKIRAEKLVKN 148

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGT 231
             T ED+++ +       +     + L  +G+R  +  R     +  +    +   K   
Sbjct: 149 VITDEDIERLRDGCDC-LRDVAMIDLLYSTGIRVGELVRLNRADINFSERECVVFGKGDK 207

Query: 232 IITVELPDG----FMKLLAMTPIGKETFFINNDKQKMNA---TQFSIWFKAKATKAGVNK 284
              V          +  L          F++ D +  +    +   I  +    K  +++
Sbjct: 208 ERRVYFDAKSKIHLINYLKSRTDDNPALFVSLD-RPYSRLKISGVEIRLRQLGRKLNLDR 266

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
              H  R+  AT + D G    ++    G   +D    Y    ++  +   + + IS
Sbjct: 267 VHPHKFRRSMATRAIDKGMPIEQVQKILGHSQIDTTMQYA-IVNQNNVKAAHRKYIS 322


>gi|254933695|ref|ZP_05267054.1| phage integrase [Listeria monocytogenes HPB2262]
 gi|293585259|gb|EFF97291.1| phage integrase [Listeria monocytogenes HPB2262]
          Length = 400

 Score = 93.2 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 49/314 (15%), Positives = 94/314 (29%), Gaps = 55/314 (17%)

Query: 66  KKPTTLKWLIS-EYRKSAHWGSLAVNSRISF-ESYFDQIIRKSGDFDYRKITTKHIRSGV 123
               T K  +  EY       +L V +   + +S   +     G     KITT HI + V
Sbjct: 70  PARMTFKAFVENEYMPKHAQNNLEVKTWTEYYKSIVARAYPAFGGVQMDKITTLHIVNLV 129

Query: 124 ESRKH--------------------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163
              +                     +P S      ++  +F+ AV  + + INP   V  
Sbjct: 130 AKLQKPGARLDVKPTDSDEKKNKPLSPRSIRNIYFAINSVFETAVEWKVIPINPAEGVRL 189

Query: 164 PKRKTEGIRPWTKEDMQQFKSFW-SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NN 220
           PK        +T  +++   +    E  + ++     L SG R ++     V+H+    +
Sbjct: 190 PKTTKRPPTIYTPAEIELLNAALVKEPLRLQVMIYIALISGCREAELAALEVKHVNLIED 249

Query: 221 IFSIKT---------------QKTGTIITVELPDGFMKLLAMTP-------------IGK 252
             + +                 K      V +P     L+                    
Sbjct: 250 ELTFEQTLVAKAGEGLLLKESTKNDVAGIVSIPAWLTNLIETYISNEVLDLKTEGKWTNH 309

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATY 311
           +  F N + + +        +K    +  +     H +R  SAT+  + G     +    
Sbjct: 310 KFLFANMEGKPIRPDSIYQRWKRFLERHNLPVIRFHDLRHTSATLLLNKGRDIKIIQERL 369

Query: 312 GW-KTVDQAETYTK 324
               +V  +  Y  
Sbjct: 370 RHKSSVTTSNIYAH 383


>gi|258653657|ref|YP_003202813.1| integrase [Nakamurella multipartita DSM 44233]
 gi|258556882|gb|ACV79824.1| integrase family protein [Nakamurella multipartita DSM 44233]
          Length = 368

 Score = 93.2 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 51/335 (15%), Positives = 105/335 (31%), Gaps = 34/335 (10%)

Query: 39  HESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESY 98
               ++      +   T       +   +  T     +++  +     +   +R  +   
Sbjct: 41  DAEAWLTDERRLIAAGTWAPPAHRTKTIEHRTFGDYATDWLTA---RPIKPRTRSHYAML 97

Query: 99  FDQIIRK-SGDFDYRKITTKHIRSGVESRKH-TPSSAIQFLTSMRVLFKWAVRQEYVAIN 156
            D++I         + IT   +R+        TP+      + +R +   AV    +  N
Sbjct: 98  LDKLILPGFESSPLKTITPDQVRAWHTRLGDSTPTLRAHAYSLLRAILTDAVHDGIIPAN 157

Query: 157 PC--LSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGV 214
           P         KR  + I+P +  ++        +     L      + GLR  +      
Sbjct: 158 PAHIRGAGNAKRVHK-IKPASLAELGVLVGAMPDAKYQ-LMTLLAAWCGLRFGELTELRR 215

Query: 215 QHLQ--NNIFSIKTQ--KTGTIITVELPDGFMKLLAM------TPIGKETFFINNDKQ-- 262
             +   N +  ++    +T   + V  P        +       P  ++    N + +  
Sbjct: 216 SDIDAKNGVIHVRRGVVRTDGEVIVGTPKSAAGHRDVNIPPHLLPAVRDYLKANVNGRDG 275

Query: 263 ----------KMNATQFSIWFKAKATKAG-VNKSAHGVRKFSATISADAGATAHELMATY 311
                      +  +     F     KAG  +   H +R   A ++A  GA+  ELM   
Sbjct: 276 LLFPAADGVSHLAPSSLYRVFYPARKKAGRPDLRWHDLRHTGAVLAAATGASLAELMGRL 335

Query: 312 GWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346
           G  T   A  Y   A       + +RR+S +V+ +
Sbjct: 336 GHSTPGAALRYQHAAQGR--DAEIARRLSQLVEVN 368


>gi|160938619|ref|ZP_02085971.1| hypothetical protein CLOBOL_03514 [Clostridium bolteae ATCC
           BAA-613]
 gi|158438318|gb|EDP16077.1| hypothetical protein CLOBOL_03514 [Clostridium bolteae ATCC
           BAA-613]
          Length = 298

 Score = 93.2 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 47/279 (16%), Positives = 95/279 (34%), Gaps = 24/279 (8%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
           I  + +       ++ +   +  Y  Q     G+    K      ++ +     TP +  
Sbjct: 14  IEAFGQWLESCERSMETVKKYRHYLKQFKEFIGEEPVTKEMVLLWKANLREH-ITPVTIN 72

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP----WTKEDMQQFKSFWSEGS 190
             + ++   FK+     +   + C S +  K       P     TK++ ++      +  
Sbjct: 73  CVIAALNGFFKYC---GW---DGCES-KFLKISKSSFYPERKELTKDEYKRLVKTAFDNG 125

Query: 191 QPRLAF--EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248
             RLA   E +  SG+R S+     V  +      I+    G I TV L      LL   
Sbjct: 126 NERLALVLETICASGIRVSELSFITVAAIHKGQAEIEC--KGRIRTVLLTRQLCSLLHSY 183

Query: 249 P----IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAG 301
                I     F+  + + ++ +      KA   +A V       H +R   A    +  
Sbjct: 184 AQKNNISSGMIFVTKNGKPLDRSNIWREMKALGIEANVKAEKIFPHNLRHLFARTYYEIE 243

Query: 302 ATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSRRI 339
               +L    G + ++    YTK +  + R+ ++  + +
Sbjct: 244 KNLSKLADILGHRDINTTRIYTKESGSQHRIQLEKMKLL 282


>gi|146295078|ref|YP_001185502.1| phage integrase family protein [Shewanella putrefaciens CN-32]
 gi|145566768|gb|ABP77703.1| phage integrase family protein [Shewanella putrefaciens CN-32]
          Length = 389

 Score = 93.2 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 44/266 (16%), Positives = 83/266 (31%), Gaps = 19/266 (7%)

Query: 93  ISFESYFDQIIRKSGDFDYRKIT--TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQ 150
             +  + +    +   +         +H          + ++A  +   +R     A R 
Sbjct: 125 HRYHRHAELTFEQIDKYFLEGFRHYLQHEAITKSDTGLSRNTACSYFNKIRAALNQAQRD 184

Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210
             +  NP   V+  K +       T ++++            R AF F   +GLR SD  
Sbjct: 185 RIIRDNPVEQVKSIKAERTQRTYLTLDEVKALTKAECRYDVLRRAFLFSCTTGLRWSDIH 244

Query: 211 RAGVQHLQN-----NIFSIKTQK----TGTIITVELPDGFMKLLAMTPIGKETFFINNDK 261
           +     ++              K       +  ++LPD  ++LL +   GK T       
Sbjct: 245 KLVWGEIELFSQGHYRIIFSQIKLKNSGNGLQYLDLPDSAVRLLNLENKGKPT---ERVF 301

Query: 262 QKMNATQFSI-WFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           + +    +S       A +AG+ K  + H  R   A      G   + L    G   +  
Sbjct: 302 KGLRYDSYSNVALVQWAIRAGITKHVTFHAGRHTFAVNQLARGLDIYSLSRLLGHSELRT 361

Query: 319 AETYTKGADRIRLGIKNSRRISSVVD 344
            E Y    +  R   +  R    + D
Sbjct: 362 TEIYADILETRR--TEAMRTFPDIFD 385


>gi|255013306|ref|ZP_05285432.1| integrase [Bacteroides sp. 2_1_7]
          Length = 311

 Score = 93.2 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 48/284 (16%), Positives = 102/284 (35%), Gaps = 36/284 (12%)

Query: 90  NSRISFESYFDQIIRKSG--DFDYRKITTKH---IRSGVESRKHTPSSAIQFLTSMRVLF 144
           ++  S++   +      G     Y  I        +S +     + ++   ++  +R ++
Sbjct: 25  STAKSYQDALNSFKCFCGMEKIPYSYINRDTLLCYQSWLLGGGRSLNTVSTYMRRIRHIY 84

Query: 145 KWAVRQEYVAINP------CLSVERPKRKTEGIRPWTKEDMQQ-FKSFWSEGSQPRLAFE 197
             AV        P         VE  ++K        +E +++ F +   + S  R+   
Sbjct: 85  NLAVEANEAPFVPNLFKDVFTGVESKRKK-----ALPREMLERMFNAPLEDPSLRRVQLT 139

Query: 198 FLL---YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL----AMTPI 250
             L   +SG+   D      +++++ I     QK+G +I +E+P G ++LL    A T  
Sbjct: 140 VRLMFAFSGIAFVDLTHLKWENIRDGILQYYRQKSGALIQLEIPSGALRLLDELSACTAK 199

Query: 251 GKETFFINNDKQK----------MNATQFSIWFKAKATKAG--VNKSAHGVRKFSATISA 298
                F     ++             ++F+   K  A   G  +  +++ +R   A+   
Sbjct: 200 ESFYLFPFLSGRRTGEAAYKEYNRTLSRFNHDLKLLARSTGVTLPVTSYTIRHSFASFLK 259

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
           +   +   +    G K++   + Y K     RL   N     SV
Sbjct: 260 EQDVSIEVISELLGHKSIKTTQIYLKSFSLERLSTVNRNCFESV 303


>gi|255009533|ref|ZP_05281659.1| integrase [Bacteroides fragilis 3_1_12]
 gi|313147308|ref|ZP_07809501.1| integrase [Bacteroides fragilis 3_1_12]
 gi|313136075|gb|EFR53435.1| integrase [Bacteroides fragilis 3_1_12]
          Length = 372

 Score = 93.2 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 54/265 (20%), Positives = 97/265 (36%), Gaps = 26/265 (9%)

Query: 84  WGSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRSGVE-----------SRKHTPS 131
           + +LA    I +   +    R  +G   + ++     R  +E           ++K   +
Sbjct: 100 FKALADRKNIKWRHVYKHFERFVNGKCTFEEVDVDLCRKFMEYLLGAPQSIHTNQKLHIN 159

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           SA  + ++ R +   A R   +  NP   ++R +         ++E++ +      E   
Sbjct: 160 SAAGYWSAFRAVLHTAYRDRKIKENPNGFLDRIESIPTMREHLSQEELIRLAETPCEEEV 219

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQ---NNIFSIKT--QKTGTIITVELPDGFMKLLA 246
            + AF F   +GLR SD  +   Q +Q   N    + T  QKT  I+   + D    LL 
Sbjct: 220 LKRAFLFGCLTGLRKSDIKQLTWQQIQPYTNGKMFVTTRMQKTKQIVHNPISDEAYGLLG 279

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATA 304
                 E    +  K KM         K     AG+ K  + H  R    ++  + G   
Sbjct: 280 E---RCEGLIFDGFKDKM----LQGPLKRWLLAAGITKKITFHCTRHSFGSLHVEMGTDM 332

Query: 305 HELMATYGWKTVDQAETYTKGADRI 329
             + A  G K +   + Y+K A + 
Sbjct: 333 AVIQAYLGHKNITTTQIYSKMAAQQ 357


>gi|169823615|ref|YP_001691118.1| putative integrase [Finegoldia magna ATCC 29328]
 gi|167832235|dbj|BAG09150.1| putative integrase [Finegoldia magna ATCC 29328]
          Length = 359

 Score = 93.2 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 42/266 (15%), Positives = 88/266 (33%), Gaps = 39/266 (14%)

Query: 95  FESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP----SSAIQFLTSMRVLFKWAVRQ 150
           ++ ++  I  K     Y ++  +H+   +   K       SS I  +  ++  + +    
Sbjct: 79  YDEHYLSIDEKF----YEQVEKRHVNDFLAELKLERNLKESSVITKIRQLKSFYSYLEEH 134

Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKED-------MQQFKSFWSEGS-------QPRLAF 196
             +  N   ++  PK +       T E+       + +       G+       + +   
Sbjct: 135 YDIKNN-VKNIRIPKAEKNLPVYLTLEEAVSLVNVVDKDIEQHK-GTKTKWICVRNKCMI 192

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD-------GFMKLLAMTP 249
             LL   LR S+     ++ ++ +   +   K     T+ L D        ++++     
Sbjct: 193 VMLLNCALRRSELRSINIEDIKEDYIIVM-GKGAKERTIYLNDLTKQSINDYLRVRPKDA 251

Query: 250 IGKETFFINNDKQKMNA---TQFSIWFKAKATKAGVNK---SAHGVRKFSATISADAG-A 302
              +  FI  +K   +     +     K    +A +N    S H +R  SAT+    G  
Sbjct: 252 KDNKALFITKNKHTYSRISCERIGDVVKKYLREANLNDQLFSTHKLRHTSATLMYQHGNV 311

Query: 303 TAHELMATYGWKTVDQAETYTKGADR 328
               L    G  +    E YT   D+
Sbjct: 312 DLRSLQQILGHASSKTTEIYTHVYDK 337


>gi|238020277|ref|ZP_04600703.1| hypothetical protein GCWU000324_00153 [Kingella oralis ATCC 51147]
 gi|237867257|gb|EEP68263.1| hypothetical protein GCWU000324_00153 [Kingella oralis ATCC 51147]
          Length = 379

 Score = 93.2 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 40/241 (16%), Positives = 89/241 (36%), Gaps = 17/241 (7%)

Query: 110 DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
           +  +    H  +     K   ++  ++L  +R +   A   E++ I+    +   +    
Sbjct: 97  NLTRDLVMHSIAKTMQGKAN-ATKNRYLALVRAILNKAA-NEWLWIDKAPKITLYREPKR 154

Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIK 225
            IR  T  + ++  +   E       F     +GLR S+      Q L            
Sbjct: 155 RIRWLTPAEAERLIAALPEYMADMATFSLA--TGLRQSNVINLRWQQLDLQRGVAWVDAS 212

Query: 226 TQKTGTIITVELPDGFMKLLAMT-PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-N 283
             K+G  I + L    + ++       KE  F ++  +++++    IW +     AG+ +
Sbjct: 213 ESKSGRAIGIALNQTALNVIQKQMGKHKEYVFTHSKGRRLHSISSRIW-RNALAAAGISD 271

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343
              H +R   A+     G   + L    GW++++  + Y        L  ++  R ++++
Sbjct: 272 FRWHDLRHTWASWLVQKGVPLNVLQEMGGWESIEMVQRYAH------LAPEHLHRHAALL 325

Query: 344 D 344
           D
Sbjct: 326 D 326


>gi|227114983|ref|ZP_03828639.1| phage integrase family protein [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 328

 Score = 93.2 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 49/314 (15%), Positives = 91/314 (28%), Gaps = 31/314 (9%)

Query: 24  YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAH 83
           Y     G+R+R           A+          + +    ++    L  LI  + ++  
Sbjct: 16  YPHGREGKRVR-KQFATKGEAVAFERFTMEQAENKPW-TVEKRDTCKLSDLIDVWYRA-- 71

Query: 84  WGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESR----KHTPSSAIQFL 137
              + +N     +S  D      GD   D+     K +   +       K +P++  + L
Sbjct: 72  -HGITLNDGEGRKSILDCAGASLGDPARDFSVYREKRLNGEISHNGREAKISPTTVNREL 130

Query: 138 TSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE--GSQPRL 194
           +  R LF    R   + A NP  SV   K     +    K+ + +              L
Sbjct: 131 SYFRALFNELARLGEWNAANPLESVRPYKTSESEMAFLQKDQIARLLHECEASKAKDLLL 190

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254
             +  L +G R S++       L     +    K     TV + +         P     
Sbjct: 191 IVKLCLSTGARWSEAEELTRFQLSPYRVTFTKTKGKRNRTVPISETL---YNALPRNNGR 247

Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGV----NKSAHGVRKFSATISADAGATAHELMAT 310
            F          +     F+    +A +     + +H +R   A+     G     L   
Sbjct: 248 LF----------SGCYNAFRKAMERADIVLPAGQCSHVLRHTFASHFMMNGGNILVLQRI 297

Query: 311 YGWKTVDQAETYTK 324
            G   +     Y  
Sbjct: 298 LGHTDIKMTMRYAH 311


>gi|188026429|ref|ZP_02997898.1| hypothetical protein PROSTU_04137 [Providencia stuartii ATCC 25827]
 gi|188019828|gb|EDU57868.1| hypothetical protein PROSTU_04137 [Providencia stuartii ATCC 25827]
          Length = 643

 Score = 93.2 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 45/273 (16%), Positives = 100/273 (36%), Gaps = 34/273 (12%)

Query: 85  GSLAVNSRISFESYFDQIIRK---SGDFDYRKITTKHIRSGVESRK---HTPSSAIQFLT 138
              A ++R +      + +R     G  +   +T  H+R  + S+     TP S    ++
Sbjct: 33  RGFARSTRETSIRIVGRFLRDKFNDGAINLSTLTPAHVRDFLASQANVYRTPVSFSLVVS 92

Query: 139 SMRVLFKWAVRQEY-------VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----S 187
           S+R  F+W + Q+           NP        ++    +  + ++++Q  +       
Sbjct: 93  SLRGYFRWRIMQKDDLYVLIGALANPANW-----QQASLPKSLSTDEIEQLLNSLGQTDP 147

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELP------- 238
            G +        L  GLR  +  R  +  +   +   +++  K      + LP       
Sbjct: 148 IGLRADAMVRCALDLGLRIGEIARLSLDDIDWVSGTITLRRTKGRRDDVMPLPVTTGNAI 207

Query: 239 DGFMKLLAMTPIGKETF--FINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSAT 295
             +++      + +E F       ++ ++ +  SI  +   T+AG+   SAH +R   A 
Sbjct: 208 AAYLQNGRPKTLHREVFASHKTPRERPISRSVVSIAIRQVYTRAGLQYTSAHLLRHTMAN 267

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADR 328
                GA+  ++      ++++    Y K   R
Sbjct: 268 RLLATGASIKDIADILRHRSLNATRIYAKLDSR 300



 Score = 59.7 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 41/235 (17%), Positives = 75/235 (31%), Gaps = 39/235 (16%)

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-- 188
           S A   L  +R   +W    E     P  SV   K +      +++++++   +      
Sbjct: 388 SMAHGRLKYLRTFMRWLQFSEPEHEVPDGSVCGRKPERGTPHIYSEQEIEDLLAAAKRLG 447

Query: 189 ------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDG 240
                 G      F  L  +GLR S++    +  +    +I  I+  K G   ++ L   
Sbjct: 448 PHNSIRGLLYETLFGLLASTGLRISEALSLRISDVDLRRSILIIRRTKFGKSRSIVLHPS 507

Query: 241 F----------MKLLAMTPIGKETFFINND----KQKMNATQFSIWFKAKATKAG-VNK- 284
                       KL          FFI        +++   Q    F+A   + G VN+ 
Sbjct: 508 TSKALHQYLNQRKLTRAASDEDAYFFIGLRADVLGKRLGGQQVCQVFRALRRELGWVNRG 567

Query: 285 -----SAHGVRKFSATI----SADAGAT-AHELMAT---YGWKTVDQAETYTKGA 326
                  H +R              G   AHE+++     G  ++ +   Y +  
Sbjct: 568 THHAPRIHDLRHSFVVRRIILWQQQGIDVAHEMLSLSTYLGHASIAETYWYLQAV 622


>gi|146337558|ref|YP_001202606.1| site-specific tyrosine recombinase XerC [Bradyrhizobium sp. ORS278]
 gi|146190364|emb|CAL74360.1| Tyrosine recombinase (integrase/recombinase) [Bradyrhizobium sp.
           ORS278]
          Length = 327

 Score = 93.2 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 41/280 (14%), Positives = 82/280 (29%), Gaps = 35/280 (12%)

Query: 85  GSLAVNSRISFESYFDQ----IIRKSGDF----DYRKITTKHIRSGVESRKH---TPSSA 133
             L+  +  ++     Q    +    G+      +  +    IR+ +  R+       S 
Sbjct: 39  RRLSPKTVEAYARDLRQCLQFLCTHWGEPVTLPRFAALEASDIRAFMAMRRADDIAGRSL 98

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
           ++ L  +R   ++  R+    +     V  PK      +P   +  ++         + R
Sbjct: 99  MRTLAGLRSFGRFLEREGQGKVGALAGVRAPKIAKSLPKPLPMDSAKRLTDADERAGESR 158

Query: 194 ---------LAFEFLLYSGLRCSDSCRAGVQHL---QNNIFSIKTQKTGTIITVELPDGF 241
                         L  SGLR S++     + +         I T K      V +    
Sbjct: 159 ETWVLARDAAVMALLYGSGLRISEALGLKRREVPRPGEGDVLIVTGKGNKTRMVPVLQNV 218

Query: 242 MKLLA--------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRK 291
           + L+           P     F        ++     +  +      G+    + H +R 
Sbjct: 219 LALIDEYARLCPYPLPAEGPMFL-GAKGGPLSPRIIQLAMERLRGALGLPDSATPHALRH 277

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
             AT     G     +    G  ++   + YT G D  RL
Sbjct: 278 SFATHLLSRGGDLRAIQELLGHASLSTTQVYT-GIDSERL 316


>gi|298482012|ref|ZP_07000201.1| transposase [Bacteroides sp. D22]
 gi|298271876|gb|EFI13448.1| transposase [Bacteroides sp. D22]
          Length = 407

 Score = 93.2 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 43/267 (16%), Positives = 90/267 (33%), Gaps = 27/267 (10%)

Query: 85  GSLAVNSRISFESYFDQIIR------KSGDFDYRKITTKHIRSGVESRKHTP----SSAI 134
             +A  +   +E+                D    +++ + I       K       ++A 
Sbjct: 128 TDMAPATVQRYETSLKHTRDFVWETYHKKDVLLDEVSRQFIEDYEFWLKTEKKCCHNTAT 187

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQ 191
           ++L + + + + A+ + ++  +P L + R              ++Q+  S        SQ
Sbjct: 188 KYLKNFKKIIRIALAKGWMKNDPFLEI-RFSLDKVEPDFLEDSEIQKLISKEIDIPRLSQ 246

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVELPDGFMKLLA 246
            R  F F  ++GL  SD      +H+  +           QKT  +  + L +  +K+L 
Sbjct: 247 VRDIFVFCCFTGLAFSDIHGLRKEHIVEDSNGVRWIRKGRQKTKIMCNIPLMEIPLKILE 306

Query: 247 MTPIGKETFFINNDK---QKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAG 301
                +   +          +   + + + K  A   G+ K+   H  R   AT +   G
Sbjct: 307 KYSTNE---YCKKHGVLFPVLCNQKMNAYLKELADICGIKKTLTTHVGRHTFATFALANG 363

Query: 302 ATAHELMATYGWKTVDQAETYTKGADR 328
            +   +    G   V     Y +  DR
Sbjct: 364 VSIESVAKMLGHTNVQMTRHYARVLDR 390


>gi|290960010|ref|YP_003491192.1| integrase [Streptomyces scabiei 87.22]
 gi|260649536|emb|CBG72651.1| putative integrase [Streptomyces scabiei 87.22]
          Length = 412

 Score = 93.2 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 59/384 (15%), Positives = 126/384 (32%), Gaps = 59/384 (15%)

Query: 3   PSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62
           P+ R   ++  +   HG++    R       R         + A +  L      +    
Sbjct: 11  PNGRSSIYLGNDGKWHGRVTVGTRDDGKPDRRHVERKTRAEVTAAVRELEKQRDAKTVRK 70

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFE-SYFDQIIRKSGDFDYRKITTKHIR- 120
             R  P T+   ++ + ++    ++  N+ + +  +    +I   G     K++ +HI  
Sbjct: 71  PGR--PWTVTAWLTHWIENVAPLAVNDNTMVGYGVAVRKHLIPGLGAHRLDKLSPEHIEV 128

Query: 121 --SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
             + +++     ++A Q   + RV    AVR+ ++  NP    + PK     + P+T  +
Sbjct: 129 FYAKMQANGSKAATAHQVHRTFRVALNEAVRRGHLGKNPVQLAKAPKVGDYEVEPYTVAE 188

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT------- 231
           +Q+     +  S+    +   L  GLR  +      + +  +   +  +++         
Sbjct: 189 VQRLL-RAAGQSRNSARWAVALALGLRQGEVLGLQWEDVDLDAGFLMVRRSRHRPQYAHG 247

Query: 232 ------------------------------IITVELPDGFMKLLAMTPIGKET------- 254
                                            V LP+  + LL      ++T       
Sbjct: 248 CAEPCGRKAGYCPQKRRSNPETSTTKSRAGRRAVGLPEQLVDLLRAHRTAQDTEREAAGT 307

Query: 255 -------FFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHE 306
                   F + + +  +       +KA    A + +   H  R  +AT+    G     
Sbjct: 308 KWVDGGLVFPDENGRSPSHRTDWAEWKALLAGAKIRDGRLHDARHTAATVLLILGVPERA 367

Query: 307 LMATYGWKTVDQAETYTKGADRIR 330
           +M   GW T   A  Y    D +R
Sbjct: 368 VMGLMGWSTTAMAARYQHMVDAVR 391


>gi|239908241|ref|YP_002954982.1| phage integrase family protein [Desulfovibrio magneticus RS-1]
 gi|239798107|dbj|BAH77096.1| phage integrase family protein [Desulfovibrio magneticus RS-1]
          Length = 360

 Score = 93.2 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 46/300 (15%), Positives = 96/300 (32%), Gaps = 23/300 (7%)

Query: 52  TGSTPKREYINSPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS-GDF 109
            G  PK++   +      TL     EY     +    +        + F +  +      
Sbjct: 45  NGLPPKKQSHETGTDSLPTLVTWAEEYL---DFCQKFSSKVVEEKIAVFRRFFQYVDPTM 101

Query: 110 DYRKITTKHIRSGVESRK--HTPSSAIQFLTSMRVLFKWAVR-QEYVAINPCLSVERPKR 166
              ++  K +   +  +    T ++A +   ++   + W ++  +++  NPC  V+R   
Sbjct: 102 PVVELKPKMVLDYLRIQGTQRTGNAANKERKNLVAAWNWGIKYLDFLEKNPCR-VDRLPA 160

Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN------ 220
           + +     ++ED  +  +      Q ++     L+   R ++  R     +         
Sbjct: 161 QKKPRYIPSEEDFWKVYAVAE--GQDKVMLLAFLHLAGRKNEILRLRWTDVDFRNRRVCL 218

Query: 221 IFSIKTQKTGTIITVELPDGFMKLL--AMTPIGKETFFIN-NDKQKMNATQFSIWFKAKA 277
             S +         + + D   + L      +  E  F N              W K   
Sbjct: 219 WTSKRAGGDKEYDWLPMTDELFETLFKHRQEVAGEWVFPNPVTGVPFV--SRQHWMKELC 276

Query: 278 TKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
             AGV K   H +R  SA+I   AG     + A    K+      Y      +R+ + + 
Sbjct: 277 GLAGVKKFDRHSIRHLSASILDAAGVELTLIQAILRHKSATTTARYLHQLRGVRIVLNDV 336


>gi|255038961|ref|YP_003089582.1| integrase family protein [Dyadobacter fermentans DSM 18053]
 gi|254951717|gb|ACT96417.1| integrase family protein [Dyadobacter fermentans DSM 18053]
          Length = 406

 Score = 93.2 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 50/304 (16%), Positives = 111/304 (36%), Gaps = 38/304 (12%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR------ 104
           L     KR  +   R+    +  L+            A  +   +E+             
Sbjct: 102 LGKEESKRTILKIFREHNDQIAALVGA--------DFAPGTLERYETSLKHTRDFIKWNY 153

Query: 105 KSGDFDYRKITTKHIR----SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
           +  D D +K+  + I          +K + ++ +++L + + +    V++ ++  +P  +
Sbjct: 154 QEDDLDIKKLDYEFISQFEFWLKAKKKISHNTTMKYLANFKKIVLLCVKRGWLMRDPFFA 213

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA-----FEFLLYSGLRCSDSCRAGVQ 215
            +  KR+ +  +  T+ ++++       G+  RLA     F F  Y+GL  +D  +    
Sbjct: 214 FKFTKREVD-RQALTESELKKVWEK-DMGT-GRLAYVKDIFLFCCYTGLAYADVYKLKRT 270

Query: 216 HL-----QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK--QKMNATQ 268
            +          + K QKT T   + L    ++++            N ++    ++  +
Sbjct: 271 EIIEGIDGGKWITTKRQKTDTPSRIPLLPMALEIME--KYEDHPQCENENRVLPVLSNQK 328

Query: 269 FSIWFKAKATKAGVNK--SAHGVRKFSAT-ISADAGATAHELMATYGWKTVDQAETYTKG 325
            + + K  A   GV K  + H  R   AT ++   G     +    G + +   + Y K 
Sbjct: 329 MNSYLKEIADLCGVKKNITFHLARHTFATTVTLTNGVPIESVSKMLGHRNIKTTQQYAKI 388

Query: 326 ADRI 329
            DR 
Sbjct: 389 VDRK 392


>gi|303327306|ref|ZP_07357748.1| site-specific recombinase, phage integrase family [Desulfovibrio
           sp. 3_1_syn3]
 gi|302863294|gb|EFL86226.1| site-specific recombinase, phage integrase family [Desulfovibrio
           sp. 3_1_syn3]
          Length = 359

 Score = 93.2 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 48/292 (16%), Positives = 96/292 (32%), Gaps = 31/292 (10%)

Query: 59  EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISF--ESYFDQ-IIRKSGD---FDYR 112
           E    P     T+    + +++     +   N +  +  E  ++  I  + G        
Sbjct: 58  EAPPPPLPSGITVDEAWAVFKR-----NWLPNLKDQYVVEKTYEHHIRPRFGHQYILALS 112

Query: 113 KITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKW------AVRQEYVA-INPCLSVERPK 165
           ++  ++ +  + +R     +A++  T  ++L  +      A +   V   NP   V    
Sbjct: 113 ELDIENFKQELLTRGGKQGTALKAATVAKILSDFKRIVSRAFKWNLVEGRNPLAGVTVKN 172

Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGS-QPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIF 222
              +  R  T ++  Q     S  S +     +  LY+GLR ++        +     I 
Sbjct: 173 AFVKRERYLTHKEAGQILDGLSLVSCKLYHIAKIALYTGLRLNEILNLRGNDINISQGIM 232

Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFIN-NDKQKMNATQFSIWFKAKATKAG 281
            ++  K G        +   +L  + P     F    +  Q++++   S  F       G
Sbjct: 233 RVRDGKAGERTAYIPKNFEKELKNLIPADNSAFLFTGSKGQRLSSNVTSNAFARFMEDTG 292

Query: 282 VNKS---------AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +N S          H  R    +  A  G     +    G KT+   E Y K
Sbjct: 293 LNGSTVDSEHKIVFHTFRHTFCSWLAIEGVPLFTIARLAGHKTISMTERYAK 344


>gi|303236762|ref|ZP_07323341.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
 gi|302482930|gb|EFL45946.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
          Length = 404

 Score = 93.2 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 65/198 (32%), Gaps = 17/198 (8%)

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS-----QPRL 194
           ++ + + A R+    +      +  K   +  +   KE +++ K+   E         R 
Sbjct: 187 LKTVCRLAYREGLADVLLFDKAKISKGNKKLPKALDKEALEKLKALHFEELEGEMETARD 246

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVELPDGFMKLLAMTP 249
            F F  Y+G    D       HL  +            KTG    V+L    ++L+    
Sbjct: 247 NFLFACYTGAAYCDLMELNKSHLVRDDKGSLWLKFNRHKTGVPCRVKLLPEAIRLMEKLH 306

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS-ADAGATAHE 306
             +    +      M    +  + KA   +AG+    + H  R   AT+   + G     
Sbjct: 307 SDERETLL----PFMGYATYQSYLKALRLRAGISFPFTTHTARHTFATLITLEQGVPIET 362

Query: 307 LMATYGWKTVDQAETYTK 324
           +    G   V   E Y K
Sbjct: 363 VSKMLGHSNVSMTERYAK 380


>gi|167761899|ref|ZP_02434026.1| hypothetical protein BACSTE_00242 [Bacteroides stercoris ATCC
           43183]
 gi|167700269|gb|EDS16848.1| hypothetical protein BACSTE_00242 [Bacteroides stercoris ATCC
           43183]
          Length = 333

 Score = 93.2 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 48/244 (19%), Positives = 89/244 (36%), Gaps = 20/244 (8%)

Query: 105 KSGDFDY---RKITTKHIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPC 158
             GD +    +K     + +      + P   +SA  + ++ R L K A R ++   N  
Sbjct: 92  TFGDVNVDLCKKFREYLLNAKQLKHSNRPISLNSASGYYSTFRGLLKIAYRDKWFCENIN 151

Query: 159 LSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL- 217
             +++ + +       T  +++Q  +   +    + A  F   +GLR SD      +   
Sbjct: 152 DYLDKIEPQDVKKEYLTLNEVKQLAATPCDIPVLKAASLFACLTGLRISDILNLQWEDFT 211

Query: 218 ----QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF 273
               Q     I+TQKT T  T+ +     + L  TP   + F      + +  +  +   
Sbjct: 212 IAPDQGYCLRIRTQKTQTEATLPISYEAYE-LCGTPGTGKVF------KDLKRSMINYPL 264

Query: 274 KAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           K+   KAG+ K  + HG R   A I    G   + +      K V   + Y    +  + 
Sbjct: 265 KSWLKKAGITKPITFHGFRHSYAVIQISLGTDIYTVSKMLTHKNVSTTQIYADLVNSKKR 324

Query: 332 GIKN 335
              N
Sbjct: 325 ETAN 328


>gi|90421704|ref|YP_530074.1| site-specific tyrosine recombinase XerC [Rhodopseudomonas palustris
           BisB18]
 gi|90103718|gb|ABD85755.1| tyrosine recombinase XerC subunit [Rhodopseudomonas palustris
           BisB18]
          Length = 324

 Score = 93.2 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 43/309 (13%), Positives = 97/309 (31%), Gaps = 41/309 (13%)

Query: 61  INSPRKKPTTLKWLISE------YRKSAHWGSLAVNSRISFESYF--------DQIIRKS 106
             +P + P     L++E      Y +S     L+  +  ++            +    + 
Sbjct: 8   APAPLELPGAAADLVAEATRWLAYLRSER--RLSPKTLEAYTRDLRQCLTFLNEHWDAQV 65

Query: 107 GDFDYRKITTKHIRSGVESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163
               +  +    IR+ + SR+       S ++ L  +R   ++  R+    +    ++  
Sbjct: 66  SIKRFAALEAGDIRAFMASRRADEIGGRSLMRALAGLRSFGRFLEREGKGKVGALSAIRA 125

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQPR---------LAFEFLLYSGLRCSDSCRAGV 214
           PK      +P      ++         + R              L  SGLR S++     
Sbjct: 126 PKVGKSLPKPIQIAGAKRLADATERAGENREPWIWARDAAVMALLYGSGLRISEALGLKR 185

Query: 215 QHL----QNNIFSIKTQKTGTIITVELPDGF---MKLLAMTP---IGKETFFINNDKQKM 264
           + +    + +   +  +   T +   L +        +A+ P     +   F+      +
Sbjct: 186 RDVPLPGKGDTLIVTGKGNKTRMVPVLQNVLSLIQDYVAVCPHPLPQQGPIFVGARGGPL 245

Query: 265 NATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           +     +  +      G+    + H +R   AT     G     +    G  ++   + Y
Sbjct: 246 SPRIIQLTMERLRGALGLPDSATPHALRHSFATHLLSRGGELRAIQELLGHTSLSTTQIY 305

Query: 323 TKGADRIRL 331
           T G D  RL
Sbjct: 306 T-GIDSERL 313


>gi|327403680|ref|YP_004344518.1| integrase family protein [Fluviicola taffensis DSM 16823]
 gi|327319188|gb|AEA43680.1| integrase family protein [Fluviicola taffensis DSM 16823]
          Length = 413

 Score = 93.2 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 50/279 (17%), Positives = 97/279 (34%), Gaps = 32/279 (11%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKHTP 130
            LI +   +  +       + S++   D +  K    DFD R I    I       +   
Sbjct: 122 ALIGQEFSAGTF----ERYKTSYKHTLDFLEWKYSTTDFDIRNINHAFITDYDFYLRTVR 177

Query: 131 SSAIQF----LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF-KSF 185
             A       + + + + +  ++  ++A +P ++    K K       T+E+++   K  
Sbjct: 178 RCANNTTIKYIRNFQKVVRICLKNGWLAKDPFVNY-SVKLKEVTRTFLTEEEIEAIQKKK 236

Query: 186 WSEG--SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-----NNIFSIKTQKTGTIITVELP 238
           +  G   Q R  F F  ++GL  +D        +Q           K +KT T+  + + 
Sbjct: 237 FVSGRLDQVRDIFLFSCFTGLAYADVKELKKSDIQKVISAEKWIMTKRKKTDTVCNIPVL 296

Query: 239 DGFMKLLAMTPIG-----KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRK 291
               +L+            +        QKMN+     + K  A   G+ K  + H  R 
Sbjct: 297 PPVEELIQKYKDDPRCENADCLLPVISNQKMNS-----YLKEIADVCGIQKELTFHIARH 351

Query: 292 FSAT-ISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             AT ++   G +   +    G   +   + Y K  D+ 
Sbjct: 352 TFATTVTLTNGVSIESVSKMLGHTNLKTTQHYAKILDKK 390


>gi|325674670|ref|ZP_08154357.1| prophage DLP12 integrase [Rhodococcus equi ATCC 33707]
 gi|325554256|gb|EGD23931.1| prophage DLP12 integrase [Rhodococcus equi ATCC 33707]
          Length = 348

 Score = 93.2 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 46/280 (16%), Positives = 78/280 (27%), Gaps = 48/280 (17%)

Query: 93  ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQE- 151
                    +  K GD    KIT   I+  +   +    SA        +L       E 
Sbjct: 47  RDRGRLAKHVDPKWGDVKLNKITGHGIQVWLRELEDAGLSASSVQKCFHLLSSSLRAAEF 106

Query: 152 --YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDS 209
              +  NP   V+ PK      R  T++++        +    RL  E L+ +GLR  ++
Sbjct: 107 ARMIPSNPAKGVKLPKGGKNVDRYLTRDEVADLAGVLDDA--DRLVVELLVGTGLRLGEA 164

Query: 210 CRAGVQHLQNNI-------------FSIKTQKTGTIITVELPDGFMKLLAMTPIGKE--- 253
                + +  +               S+K  K+    TV +     +LL     G+    
Sbjct: 165 LGLHWESVDLSRRTIHVARSWDPVGGSMKPPKSWQQRTVPISRSLAELLEKELRGRGPGS 224

Query: 254 ---------------TFFINNDKQ-KMNATQFSIWFKAKATKAGV-----------NKSA 286
                                     +        +      A V               
Sbjct: 225 PPDVEYYREVRARSGLVLPARRGHGPLGEKHLRSRWNDAFALASVVRTKRGQEPIAPARI 284

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           H +R   A+     G + +EL    G ++V   E Y   A
Sbjct: 285 HDLRHTYASWLVQDGVSIYELKNLLGHESVKTTERYAHLA 324


>gi|239929979|ref|ZP_04686932.1| integrase [Streptomyces ghanaensis ATCC 14672]
          Length = 357

 Score = 93.2 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 55/333 (16%), Positives = 100/333 (30%), Gaps = 39/333 (11%)

Query: 34  RLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRI 93
             P+  E+T       A   +  +R     P       +    ++ +      LA  +R 
Sbjct: 3   PAPFTFETTADADDWLAEKQTEIRRGEWRDPEAGAVGFRAYADKWVEE---RELAPLTRD 59

Query: 94  SFESYFDQIIRKSGDFDYRKITTKHIRSGVESR------KHTPSSAIQFLTSMRVLFKWA 147
            +    D+ +    D D  +IT   +R     R      K   + A + L ++      A
Sbjct: 60  LYRYLLDKHLTAFADLDLDEITAPRVREWRAERLRITGAKTITAKAYRLLKAIMET---A 116

Query: 148 VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCS 207
           V  E +  NPC      K K    R  T   +       + G + RL      Y  +R  
Sbjct: 117 VDDELIQRNPCRIKGAGKEKAAERRIATVAQVDALAD--AVGMRWRLMVYLGAYGPMRPE 174

Query: 208 DSCRAGVQHLQNNIFSIK--------------TQKTGTII---TVELPDGFMKLLA---- 246
           +      + +  +   ++                 T +     TV LP    + L     
Sbjct: 175 ELAGLRRRDVDVDNLRVRIRLAEPERMNGRRVQGDTKSEAGTRTVILPAFLRRELRWHLE 234

Query: 247 --MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302
               P      F+         + F   ++      G+ K    + +R    T+S  +GA
Sbjct: 235 SYAEPGPDGLVFVGEKGAPFRRSTFGRKWRRAREVVGMPKGFRFYDLRHTGHTLSTRSGA 294

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335
           T  + M   G  +   A  Y    +  +  +  
Sbjct: 295 TLKDTMVRAGQSSEKAALIYQHSDEERQEEVAA 327


>gi|212694179|ref|ZP_03302307.1| hypothetical protein BACDOR_03705 [Bacteroides dorei DSM 17855]
 gi|224026237|ref|ZP_03644603.1| hypothetical protein BACCOPRO_02993 [Bacteroides coprophilus DSM
           18228]
 gi|253572729|ref|ZP_04850129.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|254882550|ref|ZP_05255260.1| tyrosine type site-specific recombinase [Bacteroides sp. 4_3_47FAA]
 gi|317480879|ref|ZP_07939960.1| phage integrase [Bacteroides sp. 4_1_36]
 gi|329965174|ref|ZP_08302105.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
 gi|212663245|gb|EEB23819.1| hypothetical protein BACDOR_03705 [Bacteroides dorei DSM 17855]
 gi|224019473|gb|EEF77471.1| hypothetical protein BACCOPRO_02993 [Bacteroides coprophilus DSM
           18228]
 gi|251837629|gb|EES65720.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|254835343|gb|EET15652.1| tyrosine type site-specific recombinase [Bacteroides sp. 4_3_47FAA]
 gi|316902964|gb|EFV24837.1| phage integrase [Bacteroides sp. 4_1_36]
 gi|328523537|gb|EGF50634.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
          Length = 415

 Score = 93.2 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 36/228 (15%), Positives = 74/228 (32%), Gaps = 12/228 (5%)

Query: 110 DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
            +R    K  + G +    + ++A  + +  +   K A    Y+  +     +    ++ 
Sbjct: 180 AFRSFLIKAPQGGSKKGTISRNTASTYFSIFKAALKQAFVDGYLNCDIAAKAKNIMFQSA 239

Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----NNIFSIK 225
                + E++        +    R A    L +G+R SD  +     ++        +  
Sbjct: 240 RREYLSLEELNILAKTPCDDILKRAALFSAL-TGMRHSDIQKLKWSEVEEYNGGYRLNFT 298

Query: 226 TQKTGTIITVEL-PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284
            QKT  +  + + P  +         G+   F         +     W KA     G+ K
Sbjct: 299 QQKTKGVEYMPISPQAYKLCGERKKDGELLVFAGLPDPSWISRPLERWVKAS----GITK 354

Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
             + H  R   AT+    G   + +    G   V   + Y K  D+ +
Sbjct: 355 HITFHCFRHTYATLQLANGTDIYTVSKMLGHTNVKTTQIYAKVIDKKK 402


>gi|163733501|ref|ZP_02140944.1| site-specific tyrosine recombinase XerC [Roseobacter litoralis Och
           149]
 gi|161393289|gb|EDQ17615.1| site-specific tyrosine recombinase XerC [Roseobacter litoralis Och
           149]
          Length = 306

 Score = 93.2 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 41/244 (16%), Positives = 75/244 (30%), Gaps = 20/244 (8%)

Query: 107 GDFDYRKITTKHIRSGVESRKHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVER 163
           G      I+   +R+ +   + T  +A    + L++++  +KW   +E       LS   
Sbjct: 53  GLGALADISVTDMRAWMAQTRETGVAARSLARKLSAVKAFYKWLALREGFEPTAVLSTRA 112

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGS-------QPRLAFEFLLYSGLRCSDSCRAGVQH 216
           PK + +  RP   +  +         S       +       L   GLR S++       
Sbjct: 113 PKFQKKLPRPLAPDAARNLIDAIEIQSQHPWVCARDVAVVTLLWGCGLRISEALSLAAAD 172

Query: 217 LQNNIFSIKTQKTGTIITVELPDGFMKLLAM-------TPIGKETFFINNDKQKMNATQF 269
                    T K G    V +       +             +   F       +     
Sbjct: 173 APLPATLRITGKGGKERIVPVLPAARDAVDAYVRMCPHPQTAEAPLFRAVRGGPLRPGTI 232

Query: 270 SIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
                A   + G+  +A  H +R   AT   +AG     +    G  ++   + YT   D
Sbjct: 233 QKVMAAARMQLGLPATATPHAMRHSFATHLLNAGGDLRAIQELLGHASLSTTQAYT-AVD 291

Query: 328 RIRL 331
            +RL
Sbjct: 292 TVRL 295


>gi|260576668|ref|ZP_05844655.1| integrase family protein [Rhodobacter sp. SW2]
 gi|259021153|gb|EEW24462.1| integrase family protein [Rhodobacter sp. SW2]
          Length = 307

 Score = 93.2 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 45/245 (18%), Positives = 78/245 (31%), Gaps = 22/245 (8%)

Query: 107 GDFDYRKITTKHIRSGVES---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163
           G      +    +R+ +     R  +P S  + L++++    W   +E       LS   
Sbjct: 54  GLAALTAVPLADLRAWMAHEKGRGLSPRSLARALSAVKGFTGWLAEREGADATAVLSARA 113

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWS-------EGSQPRLAFEFLLYSGLRCSDSCRA-GVQ 215
           PK + +  RP + +                   ++       L   GLR S++    G  
Sbjct: 114 PKFRRKLPRPLSVDAAADVLDRVGDQSLEPWIAARDAAVVTLLYGCGLRISEALGLTGAT 173

Query: 216 HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP-------IGKETFFINNDKQKMNATQ 268
           H    +  I T K G    V +       +A                F       +N  Q
Sbjct: 174 HPLPEVLRI-TGKGGKQRLVPVLPAARAAVARYVSLCPFELAATGPLFRGARGGALNPRQ 232

Query: 269 FSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            ++  +    + G+  SA  H +R   AT    AG     +    G  ++   + YT   
Sbjct: 233 IALVMEKTRAQLGLPASATPHALRHSFATHLLSAGGDLRAIQELLGHASLSTTQGYT-AV 291

Query: 327 DRIRL 331
           D  RL
Sbjct: 292 DTQRL 296


>gi|90421232|ref|ZP_01229131.1| integrase/recombinase [Aurantimonas manganoxydans SI85-9A1]
 gi|90334507|gb|EAS48293.1| integrase/recombinase [Aurantimonas manganoxydans SI85-9A1]
          Length = 318

 Score = 93.2 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 48/289 (16%), Positives = 90/289 (31%), Gaps = 36/289 (12%)

Query: 79  RKSAHWGS------LAVNSRISFESY---FDQIIRKSGDFDYRKITTKHIRSGVES--RK 127
           R S  +           N+R ++      F       G      + + H+ + +E   RK
Sbjct: 22  RASMRFLEFFASRIRNRNTRRAYGRAIGAFLAWCEAYGVTSITAVRSLHVAAFIEELTRK 81

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR--KTEGIRPWTKED----MQQ 181
            +  +A Q L+++R+LF W V  + V +NP  SV  P    +          +    +  
Sbjct: 82  RSAPTAKQQLSAIRMLFDWLVVGQVVPVNPAASVRGPSHSVRRGKTPVLDPTEARQLLDA 141

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKT-QKTGTIITVELP 238
                  G + R     ++YS +R   +    V+ +  QN    ++  +K G    +   
Sbjct: 142 IDVTTPAGLRDRALIGLMIYSFVRVGAALGMKVEDVYVQNRRLWVRLNEKGGKRHEMPCH 201

Query: 239 DGFMKLLAMTPIG-------KETFFINNDK-------QKMNATQFSIWFKAKATKAGVNK 284
                 L     G       +   F    +       + +         + +   AG+  
Sbjct: 202 HNLEGYLHSYLDGCGIAEDCRGPLFRTIGRGTRELTTKPLAQANAYAMIQRRTAAAGIGT 261

Query: 285 SA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
               H  R    T     G T     A     +    + Y +  D + L
Sbjct: 262 KIGNHTFRATGITAYLKNGGTLERAAAMANHASTRTTQLYDRRKDEVTL 310


>gi|148260195|ref|YP_001234322.1| site-specific tyrosine recombinase XerC [Acidiphilium cryptum JF-5]
 gi|146401876|gb|ABQ30403.1| phage integrase family protein [Acidiphilium cryptum JF-5]
          Length = 313

 Score = 93.2 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 43/242 (17%), Positives = 83/242 (34%), Gaps = 24/242 (9%)

Query: 109 FDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER-P 164
            D   ++    R+ +          ++  + L+++R  F+W +RQ +  IN    + R P
Sbjct: 60  ADLAALSLADFRAWLAKAASDGVGNATRAKKLSAVRSFFRW-LRQRHGMINEAPGLLRTP 118

Query: 165 KRKTEGIRPWTKEDMQQF-------KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217
           K +    R  T  D            +  +  ++       L  +GLR  ++    +  L
Sbjct: 119 KSRRPLPRALTAPDAAAVVDSLGDDAASPALAARDTALMALLYGAGLRIHEALGLNIGDL 178

Query: 218 --QNNIFSIKTQKTGTIITVELPDGFMKLLA------MTPIGKETFFINNDKQKMNATQF 269
             +    S++  K G    V L     + +A        P      F+     ++N    
Sbjct: 179 PPEGAPLSVR-GKGGRQRIVPLLPVLRREIASWLRHHPAPTPDAPLFLGARGARLNPGVV 237

Query: 270 SIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GA 326
               +      G+  + + H +R   AT     GA    +    G  ++   + YT   A
Sbjct: 238 QRRLRDFRRLNGLPEHATPHALRHSFATHLLANGADLRAIQELLGHASLSTTQRYTAVDA 297

Query: 327 DR 328
           DR
Sbjct: 298 DR 299


>gi|294506796|ref|YP_003570854.1| Tyrosine recombinase xerD [Salinibacter ruber M8]
 gi|294343124|emb|CBH23902.1| Tyrosine recombinase xerD [Salinibacter ruber M8]
          Length = 315

 Score = 93.2 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 46/314 (14%), Positives = 113/314 (35%), Gaps = 32/314 (10%)

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK 113
           S+P  E   S R+    L+    +Y +       +  +  ++    +   +     +  +
Sbjct: 6   SSPDPELELSLRELRDHLQAFQDDYLE-----DKSDETVGTYRRSLNSFEKWFVQQNTFR 60

Query: 114 ITTKHIRSG----VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR-KT 168
            T   +R      +E R  +  S   +LT++R   ++      +  NP   V+  +R +T
Sbjct: 61  FTEDGVREYKRYLMEDRDLSQVSVSTYLTALRRFCQYLTDVGELTENPATGVKGNRRPET 120

Query: 169 EGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-- 222
                 T+ D+++ ++   + +    +       +LY+GL   +  RA V+ L++ +   
Sbjct: 121 HSRSVLTESDIEKLEAVVDDATQIDKRDHAIISLMLYAGLSEIEIVRADVEDLEHTLMGP 180

Query: 223 SIKTQKTGTII---TVEL-PDGFMKLLAMTPIGKET-----FFINND----KQKMNATQF 269
            ++ Q  G  +      L P     + A      +       F+++      +++     
Sbjct: 181 VLRVQGKGREVKDQEAPLDPPVLEAVEAYLDTRDDVHPEDPLFVSHGHRSKGKRLQTRSV 240

Query: 270 SIWFKAKATKAGVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
                    +AG+ +   + H +   +A +  + G    E+       T+D    Y K  
Sbjct: 241 RSRINGYLKEAGIKRKGVTPHSLTHTAALLWLNDGMPLEEVKERMRHGTLDTTMIYYKKQ 300

Query: 327 DRIRLGIKNSRRIS 340
             ++   ++   + 
Sbjct: 301 GLLKRDPEDLEELD 314


>gi|169830786|ref|YP_001716768.1| phage integrase family protein [Candidatus Desulforudis audaxviator
           MP104C]
 gi|169637630|gb|ACA59136.1| phage integrase family protein [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 317

 Score = 93.2 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 50/297 (16%), Positives = 91/297 (30%), Gaps = 42/297 (14%)

Query: 74  LISEYRKSAHWGSL-AVNSRISFESYF----DQIIRKSGDFDYR----KITTKHIRSGVE 124
           LI  +          +  +  +++       D   R+ G  D       I  K  R  + 
Sbjct: 4   LIDGFLAYLQAERQASPRTITAYQKDLFAGLDYFARRRGKADAELRAGDIDLKLFRGYLA 63

Query: 125 SRKHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
               +    S+  + + + R  F++ VR+  V  +P   +  P+ K         E++  
Sbjct: 64  HLGQSGLARSTIARKVAAWRSFFRYLVRENAVPASPLAGMSAPRLKKRLPGVLYPEEVGT 123

Query: 182 FKSFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV--- 235
                     G + R   E L   GLR S+     +  L+     ++    G    +   
Sbjct: 124 LLEAPDLSPTGLRDRALLEMLYAGGLRVSELVGLDLADLELKQAYVRVLGKGNRERLLPL 183

Query: 236 ------ELPDGFMKLLAMTPIGKET---FFINNDKQKMNATQFSIWFKAKAT-------- 278
                  L     +       GK+T    F+N   +++      + F             
Sbjct: 184 GGYAVEALKRYLAEGRPKLLGGKKTTAALFLNYRGERLTDRGVRLVFTNYLKGLASGVPG 243

Query: 279 ------KAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADR 328
                  A      H +R   AT   +AGA    +    G   +   + YT+  ADR
Sbjct: 244 GTRFSGSADRQAGPHLLRHCFATHLLEAGADLRTVQELLGHARLSTTQIYTRVSADR 300


>gi|218782009|ref|YP_002433327.1| integrase family protein [Desulfatibacillum alkenivorans AK-01]
 gi|218763393|gb|ACL05859.1| integrase family protein [Desulfatibacillum alkenivorans AK-01]
          Length = 372

 Score = 93.2 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 57/319 (17%), Positives = 97/319 (30%), Gaps = 27/319 (8%)

Query: 24  YFRKGHGRRIRLPYPHESTFIPAY------MSALTGSTPKREYINSPRKKPTTLKWLISE 77
           Y     G+RI+      S+   A+      ++          Y  + + KP   +  +  
Sbjct: 28  YVHPATGQRIQKIVKTASSESEAFDIRCVELADAKRDAKNLTYGIAAKSKPVLFEDTVDA 87

Query: 78  YRKSAHWGSLAVNSRISFESYF---DQIIRKSGDFDYRKITTKHIRSGVESRKHTPS--S 132
           Y         A  ++ S+E+ F     +           I          +R    +  S
Sbjct: 88  YL------DWAKENKKSWETDFHRSKALKEGFKGKLLSDINPFMCEKYKMARAKAIAKKS 141

Query: 133 AIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPK-RKTEGIRPWTKEDMQQFKSFWSEGS 190
             + L+  R     A+    Y   NP   V R K  K       T E +Q      +   
Sbjct: 142 VNKELSLARQAIDKAIEWGKYDGTNPFDKVARFKVTKGRKPGSLTPEQVQNIMDEIAHPV 201

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMT 248
           + R    F  Y+G R S+      + +        I   K G  + VEL +  + ++   
Sbjct: 202 K-RDMVAFDFYAGWRISEIRNLKWEDVDLEAGAAWIVEPKNGQSVKVELSNAALSIIKKQ 260

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN----KSAHGVRKFSATISADAGATA 304
                  F   +      T         A +AGV+    K+ H +R+  A++    G   
Sbjct: 261 DRKGPYVFCFKNGMPF-KTNLHKTITNAAKRAGVDLPPRKAWHILRRTWASMMLQNGCDV 319

Query: 305 HELMATYGWKTVDQAETYT 323
             L     WK       Y 
Sbjct: 320 ETLRVLGNWKDYSMPMWYA 338


>gi|310829015|ref|YP_003961372.1| integrase family protein [Eubacterium limosum KIST612]
 gi|308740749|gb|ADO38409.1| integrase family protein [Eubacterium limosum KIST612]
          Length = 408

 Score = 93.2 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 51/311 (16%), Positives = 109/311 (35%), Gaps = 46/311 (14%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGV- 123
           K  T L   + ++ +S    ++  +S   + +  ++ ++ + G  +   +    I+  + 
Sbjct: 93  KAKTLLAEWLRKWLESYKKYTIKQSSYTRYSNVVNRHLVPRLGHCELENLKPDAIQDYIK 152

Query: 124 ---ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
              E  K   S+    +  +    K A ++  +  NPC  +  PKR  +       ++ Q
Sbjct: 153 ATLEENKIAVSTVRGHIVILSAALKQAQKEGLIHKNPCDDIILPKRPIKKPVFLDVKEAQ 212

Query: 181 QFKSFWSEGSQPR---LAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIK--------TQ 227
           + ++     S+      A  F L +G+R  +      + +     +  I+        ++
Sbjct: 213 KLETVLK-NSRDHKKSTAVLFALKTGIRLGELAALRWKDVDFDEQVIQIRDSVQRVKNSE 271

Query: 228 KTG--------------TIITVELPDGFMKLL-------AMTPIGKETFFINNDKQKM-N 265
           K+G              +  T+ +     +LL              ETF   N K    +
Sbjct: 272 KSGMKTKMVFEGTKSYSSNRTIPMNPEIHELLYQYYETMKHRENFSETFVFTNRKNSFID 331

Query: 266 ATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYT 323
              + ++F+    KAG+   + H +R   AT +A        L    G   V    + Y 
Sbjct: 332 PRVYQLYFRRILKKAGIRHVNFHALRHTFATHAASKNMQISVLSRILGHSNVGLTLQLYV 391

Query: 324 K---GADRIRL 331
               G D+  +
Sbjct: 392 HVLSGQDQQEM 402


>gi|307266069|ref|ZP_07547615.1| integrase family protein [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306918938|gb|EFN49166.1| integrase family protein [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 291

 Score = 93.2 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 40/285 (14%), Positives = 96/285 (33%), Gaps = 31/285 (10%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISF----ESYFDQIIRKSGDFDYRKITTKHIRSGVESR- 126
            WL  ++ +       + N+ IS+    + +              +I  + +R       
Sbjct: 2   DWL-EKFEEELKQTGKSQNTIISYCTDIKEFLKWFSDTYAKEFDGRILEQDVREYRNYLL 60

Query: 127 ---KHTPSSAIQFLTSMRVLFKWAVRQEY-VAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
              K  PSS  + + +++   ++ ++    +  + C  +         IR  ++ ++ + 
Sbjct: 61  NIAKLKPSSINRKMAALKNFNQFLIQTGTGIEADIC-GISVADIHDREIRTISRNELNRL 119

Query: 183 -KSFWSEGSQPRLAF-EFLLYSGLRCSDSCRAGVQHLQN---------NIFSIKTQKTGT 231
            ++ ++ G++  +A  E L+ +G+R S+      + +           +   I+  K   
Sbjct: 120 KRAVYASGNKRDIALIELLIGTGVRVSELVSLTTEDIHLTARNGKENYSYIVIRNGKGNK 179

Query: 232 IITVELPDGFMKLLAMTPIGKET----FFINNDKQKMNATQFSIWFKAKATKAGVNK-SA 286
              + L     K L    + +       FI      +         K     AG+ + SA
Sbjct: 180 YREIPLNSQVKKALEEYLVTRSHLSGRIFIGQRG-PLRRESVDKIIKKYCRMAGIEEISA 238

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK--GADR 328
           H +R    T           +    G  ++    + Y +   AD+
Sbjct: 239 HVLRHTFCTRLMSENVPIPIISKLAGHSSIQTTMDFYVRVSRADK 283


>gi|297570135|ref|YP_003691479.1| integrase family protein [Desulfurivibrio alkaliphilus AHT2]
 gi|296926050|gb|ADH86860.1| integrase family protein [Desulfurivibrio alkaliphilus AHT2]
          Length = 332

 Score = 93.2 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 53/315 (16%), Positives = 101/315 (32%), Gaps = 27/315 (8%)

Query: 27  KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGS 86
           + HG R      +      A+   +  +  +  YI     +  TL+ ++  YRK      
Sbjct: 17  RKHGYRTITKTFNNVADAKAWARQVEAAMDRGAYIPVAAAEKNTLRMVLERYRKEIC-PR 75

Query: 87  LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVL 143
           LA   R  F    +++    GD     +    +    + R      P +    L  +  +
Sbjct: 76  LARAGRDEFAR-LNRLTEALGDLSLAALQPAEVARYRDQRLKAGAAPQTVKHDLGLLNRV 134

Query: 144 FKWAVRQEYVAINP----CLSVERPKRKTEGIRPWTKEDMQQFKSFW--SEGSQPRLAFE 197
            K A   ++    P       V +P   +   R     + ++  +    S+  +      
Sbjct: 135 LK-ACVMDWGIPLPHGIVTAQVRKPSPPSGRDRRLESREEEKLLAAAQASKSREIEKIIT 193

Query: 198 FLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQ---KTGTIITVELPDGFMKLLAMTPIGKE 253
             L +  R ++      +H+  +           KT T  TV L  G M +L   P    
Sbjct: 194 IALETAARRAEIASMRWEHINLDKRIWFIPAAATKTKTARTVPLSTGAMAVLQGLPR--- 250

Query: 254 TFFINNDKQKMN---ATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMA 309
                 D Q  +       +  F     +A + +   H +R  + +   + G    E+ A
Sbjct: 251 ----RIDGQVWSFSHPDGITQAFDRICKRAEIEDLRFHDLRHEATSRLFEKGLNMMEVAA 306

Query: 310 TYGWKTVDQAETYTK 324
             G K +   + YT 
Sbjct: 307 ITGHKDLKMLKRYTH 321


>gi|58616455|ref|YP_195584.1| putative site specific integrase [Azoarcus sp. EbN1]
 gi|56315917|emb|CAI10560.1| putative site specific integrase [Aromatoleum aromaticum EbN1]
          Length = 328

 Score = 93.2 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 46/274 (16%), Positives = 87/274 (31%), Gaps = 31/274 (11%)

Query: 89  VNSRISFESY---FDQIIRKSGDF-DYRKITTKHIRSGVESR--KHTPSSAIQFLTSMRV 142
            N+R ++      F     +       R I   H+ + VE+   + +  S  Q L ++R+
Sbjct: 47  PNTRRAYGRAVAGFAAWCEQEARITALRDIEPVHVAAYVETLQTRLSAPSVKQHLAAIRM 106

Query: 143 LFKWAVRQEYVAINPCLSVERPKR--KTEGIRPWTKED----MQQFKSFWSEGSQPRLAF 196
           LF W V  + VA NP  +V  PK   K         ++    +       + G + R   
Sbjct: 107 LFDWLVVGQVVATNPASAVRGPKHSVKKGKTPVLAADEARALLDAIDVSTAVGLRDRALI 166

Query: 197 EFLLYSGLRCSDSCRAGVQH--LQNNIFSIKT-QKTGTIITVELPDGFMKLLAM------ 247
             ++Y+  R   + +  ++   +Q     ++  +K G    +       + L        
Sbjct: 167 GLMVYTFARIGAALKMRIEDVYVQGRRSWVRLHEKGGKRHEMPCHHNLEEYLHAYIEGAQ 226

Query: 248 -TPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATIS 297
               GK   F            + M+          +A  AG+      H  R    T  
Sbjct: 227 LAGAGKAFLFRTAIGHTGRLSERPMSQADAYRMIGRRAADAGILTRIGNHSFRATGITEY 286

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
              G            ++      Y +  D++ L
Sbjct: 287 LRNGGKLEIAQQMANHESARTTGLYDRRNDQLTL 320


>gi|157157141|ref|YP_001462517.1| phage integrase family site specific recombinase [Escherichia coli
           E24377A]
 gi|157079171|gb|ABV18879.1| site-specific recombinase, phage integrase family [Escherichia coli
           E24377A]
          Length = 376

 Score = 93.2 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 59/377 (15%), Positives = 114/377 (30%), Gaps = 64/377 (16%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKR-------- 58
           L P+  K   R+ K+ + +R     +       +        +       ++        
Sbjct: 14  LSPYFDK---RNNKVYWRYRHPITGKNHGLGSIDQKLAETIAAEANSRLARQQMEQMLSL 70

Query: 59  -EYINSPRKKPTTLKWLISEYRKS----AHWGSLAVNSRISFESYFDQIIRKSGDFDYRK 113
            E I S     +T+   ++ YRK        G + +N+     +       + G      
Sbjct: 71  QEKIISDTGGSSTVTIFLNNYRKIQQERYENGEIKLNTLKQKAAPLRVFDERFGTRPLDA 130

Query: 114 ITTKHIRSGVESRKHTPSSAIQ--FLTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTE 169
           IT K + S +E  K    + +   F   +  +F+ A +   V    NP  S ++P+    
Sbjct: 131 ITVKDVVSVLEEYKSRGHNRMGQIFRKVLIDVFREAQQTGDVPPGFNPAESAKKPQV-RI 189

Query: 170 GIRPWTKEDMQQ-FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
             +  T ++    + +   +G   +      L +G R SD C+     +++    ++ QK
Sbjct: 190 SRQRLTFDEWTMIYNAAEKDGYFLQRGMLLALMTGQRLSDICKMQFSDIRDGYLHVEQQK 249

Query: 229 TGTIITVE-----------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265
           TGT I +                        L    +         K           + 
Sbjct: 250 TGTRIAIPLALRCDKLNLTLDDVVSSCRDCVLSPWLLHHHHAKGTAK-------RGGMVK 302

Query: 266 ATQFSIWFKAKA-------TKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
               ++ FK             G   S H  R  S  +  + G          G      
Sbjct: 303 PATLTVAFKKARDSVDYNWRANGTPPSFHEQRSLSERLFREQGIDT---QILLGHSNQKM 359

Query: 319 AETY--TKGADRIRLGI 333
            + Y   +G +  +L I
Sbjct: 360 TDIYNDARGKEWKKLVI 376


>gi|169826079|ref|YP_001696237.1| prophage Lp3 protein 1, integrase [Lysinibacillus sphaericus C3-41]
 gi|168990567|gb|ACA38107.1| prophage Lp3 protein 1, integrase [Lysinibacillus sphaericus C3-41]
          Length = 390

 Score = 93.2 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 46/292 (15%), Positives = 96/292 (32%), Gaps = 52/292 (17%)

Query: 95  FESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS-MRVLFKWAVRQEYV 153
                  +     D     +  KH+    E  K       + + +    +  +A+++ Y+
Sbjct: 102 RNHILPAMREYKIDKITVDVCQKHVDKWAEKLKK-----FRVVKAYAAKVLDFAIKRGYM 156

Query: 154 AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-----------GSQPRLAFEFLLYS 202
             NP   V+ P   ++ +    +E+ + F +                 +    F  L +S
Sbjct: 157 QTNPFTHVDMPIAASKKVTIIEEEEAENFYTREQLIQFLACLEQENNYKAYALFRLLAFS 216

Query: 203 GLRCSDSCRAGVQHL----------------QNNIFSIKTQKTGTIITVELPDGFMKLLA 246
           G+R  ++       L                +NN   +K+ KTG   T+++ D  M +L 
Sbjct: 217 GMRKGEALALTWNDLNFTTNEMRINKALSRGKNNKLYVKSTKTGFARTIKMDDKTMAILK 276

Query: 247 MTPI---------------GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVR 290
                               K+  F N   + +  T+   W      K  +   + HG+R
Sbjct: 277 EWKKKQKQEYLVLGFNTMQPKQLVFSNERNEFLQPTKTRKWILHVQKKYKLGTITTHGLR 336

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGIKNSRRISS 341
               ++  +AGA+  E+    G   V      Y     + +   +  ++ +S
Sbjct: 337 HTHCSLLFEAGASLKEVQDRLGHSDVQTTMNIYAHVTKKAK--EEAIQKFAS 386


>gi|226948714|ref|YP_002803805.1| phage integrase [Clostridium botulinum A2 str. Kyoto]
 gi|226841697|gb|ACO84363.1| phage integrase [Clostridium botulinum A2 str. Kyoto]
          Length = 349

 Score = 92.8 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 47/294 (15%), Positives = 106/294 (36%), Gaps = 30/294 (10%)

Query: 57  KREYINSPRKKPT-TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKI 114
           +R+++N  +  P    + L++ Y        +   +    +   D +I     D +   I
Sbjct: 43  ERDFLNKQKNDPGINFENLVNIYLDDIK-NKIRFTTFRQKKLIVDLKIAPYFKDINLNNI 101

Query: 115 TTKHIRSGVESRKHTPSSAIQFLTS---MRVLFKWAVRQEYVAINPCLSV-ERPKRKTEG 170
           T  HIR           S     T    +  +F +A+R   ++ NP +      K+  + 
Sbjct: 102 TPNHIRKWQNKIMENDYSDTYLRTINNQLSAIFNFAIRYYNLSSNPVVKAGPMGKKNADV 161

Query: 171 IRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT- 229
           ++ WT E+ + F  +  +    +LAF+ L ++G+R  +      + +  +   I   K  
Sbjct: 162 MQFWTVEEFKTFIEYVKKPIY-KLAFKILFWTGIRSGELLALTYKDIDLDRKIININKNY 220

Query: 230 ---------------GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN--ATQFSIW 272
                           +   V + D   + +       + + +N +++         +  
Sbjct: 221 ARINKKDIINPPKTLKSKREVTISDFLCEDIKEYK--NKIYNLNENERIFTIAKQNINAQ 278

Query: 273 FKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
                 K+G+ K   H +R   A++  + G T   +    G + ++    TY+ 
Sbjct: 279 LNRTCKKSGIKKIRLHDLRHSHASLLIELGFTPLLISERLGHENIETTLNTYSH 332


>gi|224024631|ref|ZP_03642997.1| hypothetical protein BACCOPRO_01358 [Bacteroides coprophilus DSM
           18228]
 gi|224017853|gb|EEF75865.1| hypothetical protein BACCOPRO_01358 [Bacteroides coprophilus DSM
           18228]
          Length = 410

 Score = 92.8 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 46/281 (16%), Positives = 99/281 (35%), Gaps = 34/281 (12%)

Query: 85  GSLAVNSRISFE---SYF-DQIIRKSG--DFDYRKITTKHIRSGVESRKH----TPSSAI 134
              A+ +   +E    Y  + I +K G  D    ++  + +R+     K       ++ I
Sbjct: 130 KDYALITVRRYESCKRYLAELIRQKFGKDDLPLVEVNGELVRAFEFYLKTEKECQQNTVI 189

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
           +++  ++ +   A+  E++A +P + ++  +++       T +++     +  E    R+
Sbjct: 190 RYMKCLKKITNLALANEWIAKDPFIGIKFHEKEVI-REFLTMDELLTI--YHKEFPLERI 246

Query: 195 A-----FEFLLYSGLRCSDSCRAGVQHL-----QNNIFSIKTQKTGTIITVELPDG---- 240
           A     F F  ++GL   D  +   +H+      N       QKT  +  + L D     
Sbjct: 247 AVVRDVFIFAAFTGLAFIDVQQLSPEHIVKDNNGNLWIRKPRQKTKNMCNIPLLDIPLEI 306

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS- 297
             K        K+   +          + + + K  A    + K  + H  R   AT   
Sbjct: 307 LRKYADYPACKKKGVLL----PVPCNQKMNSYLKEIADLCLIKKNLTTHTARHSYATSVC 362

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338
              G +   +    G   +   + Y +  D   L   N+ R
Sbjct: 363 LANGVSIENVAKMLGHSNIKMTQHYARVLDSSILKDMNNVR 403


>gi|116872612|ref|YP_849393.1| phage integrase family protein [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116741490|emb|CAK20614.1| phage integrase family protein [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 377

 Score = 92.8 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 48/326 (14%), Positives = 97/326 (29%), Gaps = 44/326 (13%)

Query: 64  PRKKPTTLK--------WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT 115
            + K  TL              Y K+     L+ ++  S+E+ F ++    G+    KI 
Sbjct: 52  KKSKDGTLTLNSSLKLFDFCDIYIKTYVEKILSDSTLNSYENAFRELKDYFGNIKLDKIE 111

Query: 116 TKHIRSGVESR-KHTPSSAIQFL-TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
               +  +    K    S ++     +  ++  A+   YV  NP   V+   +    ++ 
Sbjct: 112 PLEYQLFINHLGKELAYSTVETRHKKITAMYNKAIMLNYVKSNPTSGVKIAGQDVAAMKL 171

Query: 174 --WTKEDMQQFKSFWSEG-SQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIK--- 225
                + +   K    +  S  R      + +G+R  +         + +     +K   
Sbjct: 172 QYLEDDQVAHLKKLVEDSMSVSRAVIFLAIQTGMRFGEIIALTWNSINFERQRIVVKNSW 231

Query: 226 ---------TQKTGTIITVELPDGFMKLLAMTP-------------IGKETFFINNDKQK 263
                      KT    T+ + D  +  L                       F   D Q 
Sbjct: 232 DYKKKKTFVPTKTEERRTIFIDDSTVDYLKKYKKWSKEYISNENITNDLSLVFCTRDNQP 291

Query: 264 MNATQFSIWFKA-KATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ET 321
           ++    +   K      +    + H +R        +AG     +    G   +    E 
Sbjct: 292 IDNQSCNKMLKKLFMNISNEYVTLHKLRHTHTVQCLEAGLDIIYVSERLGHADISTTMEY 351

Query: 322 YTKGADRIRLGIKNSRRISSVVDSDD 347
           YT  +   +L   N  RIS+  + + 
Sbjct: 352 YTHVS--KKLRNMNEDRISNYFNKEK 375


>gi|313897734|ref|ZP_07831275.1| site-specific recombinase, phage integrase family [Clostridium sp.
           HGF2]
 gi|312957269|gb|EFR38896.1| site-specific recombinase, phage integrase family [Clostridium sp.
           HGF2]
          Length = 397

 Score = 92.8 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 62/377 (16%), Positives = 111/377 (29%), Gaps = 59/377 (15%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
            ++ K     G   Y +          P P      P+            E       K 
Sbjct: 24  KYLYKYVDAFGNTKYVYAWRLTP--TDPTPKGKREKPSLRELEQQIRRDIEDGIDSTGKK 81

Query: 69  TTLKWLISEY-RKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRSGVESR 126
            T   L   Y +++A   ++  +++   E     +   K G      I     +      
Sbjct: 82  MT---LCQLYAKQNAQRANVKKSTQKQREQLMRLLKEDKLGARSIDTIKPSDAKEWALRM 138

Query: 127 KHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPC--LSVERPKRKTEGIRPWTKEDMQQ 181
           K      ++      S++  F  A++ + V  NP      E  +  T+     T+E  Q 
Sbjct: 139 KDKGFSYNTINNHKRSLKASFYIAIQDDCVRKNPFDFKLSEVLENDTKEKVALTEEQEQA 198

Query: 182 FKSFWSEGSQPRLAFE---FLLYSGLRCSDSCRAGVQHLQ----------------NNIF 222
             SF    +     ++    LL +GLR S+ C   V  +                    +
Sbjct: 199 LLSFIKTDNVYHKHYDDVLILLKTGLRISELCGLTVADIDFKNEVVIIDHQLLKSKEQGY 258

Query: 223 SIKTQKTGTIIT-VELPDG----FMKLLAMTPIGKET--------FFINNDKQKMNATQF 269
            I+T KT + I  V L       F +++   P  +           F+N+  +   A  +
Sbjct: 259 YIETPKTKSGIRQVPLSRETIQAFQRVMKKRPKAEPFVIDGQSNFLFVNHKGKPKVAIDY 318

Query: 270 SIWFKAKATKAGVNK--------SAHGVRKFSATISADAGATAHELMATYGWKTVD---- 317
           +  F     K   +         + H +R    T  A       +L    G   +     
Sbjct: 319 NALFVRMVKKYNKHHKDNPLPHITPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISITMN 378

Query: 318 ---QAETYTKGADRIRL 331
               A   T  ++  RL
Sbjct: 379 WYAHASIDTAKSEVQRL 395


>gi|307566493|ref|ZP_07628924.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
 gi|307344804|gb|EFN90210.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
          Length = 439

 Score = 92.8 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 47/287 (16%), Positives = 102/287 (35%), Gaps = 33/287 (11%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK---HIRS-GVESRK 127
           K  +  +R S    +L + +R             +GD   ++       H R   +    
Sbjct: 130 KATVRAFRDSRKNFALFLKTRG------------NGDSLPKEADKDLIEHYRLFMLRDLG 177

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           +  S+    L  +  + + A+++ Y+  +P   ++  +  T      T +D+ +  S+  
Sbjct: 178 NKESTVSNRLRHLHQVIRKALQERYIREDPFEQID-IETPTYERNALTSDDLHKLLSYRP 236

Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHL-----QNNIFSIKTQKTGTIITVELPD 239
             S     RL F    ++GL  SD  +  +  +          S+   KT     V L  
Sbjct: 237 HRSVDNHCRLIFLLGCFTGLAFSDLKKLRMDDVYTFGDGRRYISLCRTKTQNRSIVPLLP 296

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN----KSAHGVRKFSAT 295
              ++L +   G++   +   ++    + F+   +    KAG+      ++H  R   AT
Sbjct: 297 IAEEILTIVSDGRKEGLL--FREFPTNSHFNRKIRDIIIKAGLPPHTEATSHTARHTFAT 354

Query: 296 IS-ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
               + G     +    G + +   E Y K   + ++  +    + S
Sbjct: 355 TICLENGLPIETVSKILGHRFISTTELYAK-VSKSKIAREMQPLMGS 400


>gi|54022678|ref|YP_116920.1| putative phage integrase [Nocardia farcinica IFM 10152]
 gi|54014186|dbj|BAD55556.1| putative phage integrase [Nocardia farcinica IFM 10152]
          Length = 403

 Score = 92.8 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 55/332 (16%), Positives = 105/332 (31%), Gaps = 40/332 (12%)

Query: 18  HGK-IIYYFRKGHGR-----RIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
           HGK   +  R   G      +         +++ A  +A+                    
Sbjct: 34  HGKGKRWRARYVDGTGRENTKRFARKVDAQSWLDAQTAAVVSGVHAPPSAGRVTVDVIAT 93

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR---K 127
            WL        +  S   ++R  + S  D  I  + G+     +  + I+  V  +    
Sbjct: 94  AWL-------DNHPSWEESTRSRYRSVVDAHIRPRWGNVRVADLAHEEIQQWVIEQVSGG 146

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
               +  + L  +  +  +AV    +A+NPC +V RPK++    R  +  ++++      
Sbjct: 147 AAGGTVRKNLGVLSQICDYAVITRRIAVNPCSTVNRPKQRLAKRRYLSGMEVERLAEQAG 206

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---------------NNIFSIKTQKTGTI 232
                 L    L Y GLR ++     V  +                + +   K  K    
Sbjct: 207 GNW---LTVMVLAYCGLRFAELAGLQVSSVSLQRRRLQIERTITEVDGVLVTKAPKDHQR 263

Query: 233 ITVELP----DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAH 287
            +V  P    +   + LA      E F  +             W+   A  AG+   + H
Sbjct: 264 RSVPFPAFLAEPLERHLAGRRPDSEVFTSSTGAILRVRNMRRAWWDGAAKAAGLEGLTPH 323

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQA 319
            +R  +A+++   GA+   L    G       
Sbjct: 324 EMRHTAASLAVSHGASVLALQRMLGHDKPSTT 355


>gi|239908039|ref|YP_002954780.1| tyrosine recombinase XerC [Desulfovibrio magneticus RS-1]
 gi|239797905|dbj|BAH76894.1| tyrosine recombinase XerC [Desulfovibrio magneticus RS-1]
          Length = 308

 Score = 92.8 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 49/268 (18%), Positives = 96/268 (35%), Gaps = 29/268 (10%)

Query: 85  GSLAVNSRISFESYFDQII-----RKSGDFDYRKITTKHIR---SGVESRKHTPSSAIQF 136
              +  +  ++E    Q       R  G      IT  H+R   + +  R+   SS  + 
Sbjct: 12  KGYSPATVAAYEDDLAQFEAFLRGRGLGLDAPEAITRDHVRGFLAELHRRRAAKSSMGRK 71

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF---------KSFWS 187
           L+++R  FK+ ++++ +A +P   ++ PK +  G R    ++                 +
Sbjct: 72  LSTLRGFFKYQLQKKRLAADPTAGLKNPKAERRGPRALNADEAVALVTPPPAAPAADGSA 131

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-ELPDGFMKLLA 246
              +     E L  SGLR S++    +  L  +    +    G+   +  L D   + L 
Sbjct: 132 AACRDLALAELLYGSGLRISEALGLDLDDLDLSQGIARVMGKGSKERLAPLSDASRERLR 191

Query: 247 MTPIGK---------ETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSAT 295
                +            F+ N   +++  Q +    A A  AG+  +   H +R   AT
Sbjct: 192 EYLRRRGELGPGPMELALFLGNRGGRLDRRQAARIVDALAKGAGLARHAHPHMLRHSFAT 251

Query: 296 ISADAGATAHELMATYGWKTVDQAETYT 323
              ++GA    +    G   +     YT
Sbjct: 252 HLLESGADLRSVQELLGHARLTTTTRYT 279


>gi|17986431|ref|NP_539065.1| site-specific tyrosine recombinase XerC [Brucella melitensis bv. 1
           str. 16M]
 gi|256045523|ref|ZP_05448406.1| site-specific tyrosine recombinase XerC [Brucella melitensis bv. 1
           str. Rev.1]
 gi|260562833|ref|ZP_05833319.1| tyrosine recombinase xerC [Brucella melitensis bv. 1 str. 16M]
 gi|265991947|ref|ZP_06104504.1| tyrosine recombinase xerC [Brucella melitensis bv. 1 str. Rev.1]
 gi|34222942|sp|Q8YJD9|XERC_BRUME RecName: Full=Tyrosine recombinase xerC
 gi|17982026|gb|AAL51329.1| integrase [Brucella melitensis bv. 1 str. 16M]
 gi|260152849|gb|EEW87941.1| tyrosine recombinase xerC [Brucella melitensis bv. 1 str. 16M]
 gi|263003013|gb|EEZ15306.1| tyrosine recombinase xerC [Brucella melitensis bv. 1 str. Rev.1]
          Length = 315

 Score = 92.8 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 49/291 (16%), Positives = 92/291 (31%), Gaps = 31/291 (10%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFES----YFDQIIRKSGDFD----YRKITTKHIRS 121
           L     E+ KS      L+ N+ I++E     +   +    G+         +    +RS
Sbjct: 15  LAAAREEWLKSLKTMRRLSDNTLIAYERDTRQFLQFLTGHLGEPPSLKEIGNLRIADLRS 74

Query: 122 GVESRKHTPSSAIQF---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
            + +R++  + A      L  +R L +   ++  V      ++  P++     +P T +D
Sbjct: 75  FLANRRNDGAGARTLGRGLAGVRSLLRHLEKRGLVNAAGASAMRAPRQPKSLPKPLTADD 134

Query: 179 MQ-------QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKT 229
            +       Q        ++       L   GLR S++       L +        T K 
Sbjct: 135 ARRVVSADGQMAEEPWIAARNAAVLTLLYGCGLRISEALGLSGDALSDPSARSMTITGKG 194

Query: 230 GTIITVELPDGFMKLLAMTPI-------GKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
                V L     K +A             +  F       ++A       +      G+
Sbjct: 195 SKTRLVPLLPAVHKAVAQYRALCPFDLSAGQLLFRGAKGGPLHAAIIQREMQKLRAGLGL 254

Query: 283 N--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
               + H +R   AT     G     +    G  ++   + YT G D  RL
Sbjct: 255 PDSATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQVYT-GVDTQRL 304


>gi|327460988|gb|EGF07321.1| phage integrase family integrase/recombinase [Streptococcus
           sanguinis SK1057]
          Length = 328

 Score = 92.8 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 36/279 (12%), Positives = 87/279 (31%), Gaps = 15/279 (5%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----SRKHT 129
           L+  +  +      +  S   ++   + +         R +TT  +R+ +      RK +
Sbjct: 53  LLELFISAKRIEGCSEKSLKYYKIVIENMFTSL-KTAIRDLTTSDLRTYLAHYQQERKSS 111

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
             +           F W   ++Y+  +P   + + K        ++ E ++  +    E 
Sbjct: 112 KVTIDNMRRIFSSFFGWLEDEDYILKSPVRRIHKIKTDKTIKETFSDEGLELLRDACHE- 170

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG-----FMKL 244
            +     + L  +G+R  +      + +            G    +   D       +  
Sbjct: 171 IRDLAMIDLLASTGMRVGELVGLNREDINFYERECLVFGKGNSERIVYFDARTKIHLINY 230

Query: 245 LAMTPIGKETFF--INNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG 301
           L          F  +++   ++         +    KA +NK   H  R+  AT + D G
Sbjct: 231 LDSRQDDNPALFVSLSSPYNRLLIGGVETRLRQIGEKADLNKVHPHKFRRTLATRAIDKG 290

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
               ++    G   +D    Y    ++  +   + + I 
Sbjct: 291 MPIEQVQHLLGHVKIDTTMHYA-MVNQANVKNSHRKYIG 328


>gi|294782725|ref|ZP_06748051.1| integrase/recombinase, phage integrase family [Fusobacterium sp.
           1_1_41FAA]
 gi|294481366|gb|EFG29141.1| integrase/recombinase, phage integrase family [Fusobacterium sp.
           1_1_41FAA]
          Length = 323

 Score = 92.8 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 36/248 (14%), Positives = 88/248 (35%), Gaps = 14/248 (5%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS----AIQFLTSMRVL 143
           +  + + + S  + +I K  +    +I T+ +R+ +   +   +S           +   
Sbjct: 62  SDKTILYYVSTIETMITKI-NKSIVEIETEDLRTYLSDYQINNNSSKVTIDNIRRILSSF 120

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203
           F W   + Y+  +P   +++ K  +     +T E+++  +    E  +  +  + L  +G
Sbjct: 121 FSWLENENYIIKSPVRRIKKVKAPSIVKETYTDEELETMRDNV-EALRDLVLIDILASTG 179

Query: 204 LRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDG----FMKLLAMTPIGKETFFIN 258
           +R  +  +  ++ +       I   K      V           + L       +   I+
Sbjct: 180 MRVGELVKLNIEDINFTERECIVLGKGNKERVVYFDARTKIHLKRYLENRKDNNKALLIS 239

Query: 259 NDKQ--KMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKT 315
                 +++     +  +    K G+ K   H  R+  ATI+ D G    ++    G + 
Sbjct: 240 LKAPCNRLSIAGVELRLRKIGEKLGIKKVHPHKFRRTLATIAIDKGMPIEQVQKLLGHEK 299

Query: 316 VDQAETYT 323
           +D    Y 
Sbjct: 300 IDTTLQYA 307


>gi|257870759|ref|ZP_05650412.1| phage integrase [Enterococcus gallinarum EG2]
 gi|257804923|gb|EEV33745.1| phage integrase [Enterococcus gallinarum EG2]
          Length = 383

 Score = 92.8 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 55/327 (16%), Positives = 120/327 (36%), Gaps = 47/327 (14%)

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIR 120
            S +K+  T + L  ++ +  H  S+  ++  +   + +  ++ K G     +IT    +
Sbjct: 59  GSKKKRTITFQELYDDWLE-QHRKSVKSSTVATNRRFIEGHVLPKFGKLKLDQITVSFCQ 117

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP--WTKED 178
             V               +   +  + V  E +  NP      P++K E  +P  ++K++
Sbjct: 118 KCVNEWHDKYKQYHYIRRATAQVMNYGVSMELMESNPMKKTILPRKKEEEKKPNFYSKDE 177

Query: 179 MQQFKSFWS--EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-----------------N 219
           + +F +F    +  +    F  L  +G+R S++    ++ L                  +
Sbjct: 178 LHEFMTFVKTLDNYKYYAFFRLLAITGMRKSEALGLYIKDLNIFNKTLTIGKTIAIDEYD 237

Query: 220 NIFSIKTQKTGTIITVELPDGFMKLLAMTPI--GKETFFINNDKQKMNATQFSI------ 271
            +     +   +  T+ L D  +++L        ++ F +  +  K     FS       
Sbjct: 238 QVVLQTPKTKNSYRTISLDDETIRILQKWFSIQKEDYFKLGFNTSKAKQLMFSNMSNDLY 297

Query: 272 ----------WFKAKATKAGVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
                     W   KA K G+     S HG R  + ++  +AGAT +E+    G K V  
Sbjct: 298 YPQVINDWLDWIYDKAEKEGLTLKRISPHGFRHTACSLMFEAGATINEVQKRLGHKDVKT 357

Query: 319 AE-TYTKGADRIRLGIKNSRRISSVVD 344
               Y+    +       S+++++ + 
Sbjct: 358 TMNIYSHVTPQQ--AENTSQKLANYLG 382


>gi|228474721|ref|ZP_04059452.1| integrase [Staphylococcus hominis SK119]
 gi|228271384|gb|EEK12752.1| integrase [Staphylococcus hominis SK119]
          Length = 378

 Score = 92.8 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 47/298 (15%), Positives = 100/298 (33%), Gaps = 46/298 (15%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
           WL  +YR +     +  ++     + F   I+    D   + IT  H +  V     T S
Sbjct: 74  WL-EQYRNT-----VKESTYQQAMTTFKMMILPHFKDMAIKDITVPHCQKVVNEWYRTYS 127

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR----PWTKEDMQQFKSFWS 187
              +       +F++A+  + +  NP   ++ P++K+         +T +++QQF     
Sbjct: 128 ETKKERIYASTIFEYAISLKIITDNPFNHIKAPRKKSNQKHETMKYYTSDELQQFLELVK 187

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-----------------G 230
           +       F  L ++G+R  +        +     ++   KT                  
Sbjct: 188 DNVLHHALFRTLAFTGIRRGELMALTWNDIDFTNQTLSVNKTLAEGLNHRQFIDTPKTRS 247

Query: 231 TIITVELPDGFMKLL---------------AMTPIGKETFFINNDKQKMNATQFSI-WFK 274
           +I T+ + D  +++L                 T    +  F N +  K     ++     
Sbjct: 248 SIRTISVDDKTLEVLKEWRTQQRVLSLKHGHNTSSKHQEIFTNVETNKRLNRVYANETLN 307

Query: 275 AKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIR 330
               K    + + HG R    ++  +AG +  E+    G   +      Y    ++ R
Sbjct: 308 LICKKNNFKRITVHGFRHTHCSLLFEAGLSVQEVQDRLGHGDIQTTMGIYAHVTEKQR 365


>gi|225628115|ref|ZP_03786150.1| tyrosine recombinase XerC [Brucella ceti str. Cudo]
 gi|237816277|ref|ZP_04595270.1| tyrosine recombinase XerC [Brucella abortus str. 2308 A]
 gi|225616940|gb|EEH13987.1| tyrosine recombinase XerC [Brucella ceti str. Cudo]
 gi|237788344|gb|EEP62559.1| tyrosine recombinase XerC [Brucella abortus str. 2308 A]
          Length = 317

 Score = 92.8 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 49/291 (16%), Positives = 92/291 (31%), Gaps = 31/291 (10%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFES----YFDQIIRKSGDFD----YRKITTKHIRS 121
           L     E+ KS      L+ N+ I++E     +   +    G+         +    +RS
Sbjct: 17  LAAAREEWLKSLKTMRRLSDNTLIAYERDTRQFLQFLTGHLGEPPSLKEIGNLRIADLRS 76

Query: 122 GVESRKHTPSSAIQF---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
            + +R++  + A      L  +R L +   ++  V      ++  P++     +P T +D
Sbjct: 77  FLANRRNDGAGARTLGRGLAGVRSLLRHLEKRGLVNAAGASAMRAPRQPKSLPKPLTADD 136

Query: 179 MQ-------QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKT 229
            +       Q        ++       L   GLR S++       L +        T K 
Sbjct: 137 ARRVVSADGQMAEEPWIAARNAAVLTLLYGCGLRISEALGLSGDALSDPSARSMTITGKG 196

Query: 230 GTIITVELPDGFMKLLAMTPI-------GKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
                V L     K +A             +  F       ++A       +      G+
Sbjct: 197 SKTRLVPLLPAVHKAVAQYRALCPFDLSAGQPLFRGAKGGPLHAAIIQREMQKLRAGLGL 256

Query: 283 N--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
               + H +R   AT     G     +    G  ++   + YT G D  RL
Sbjct: 257 PDSATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQVYT-GVDTQRL 306


>gi|62195116|ref|YP_220445.1| hypothetical protein pMR2_03 [Micromonospora rosaria]
 gi|61106478|gb|AAX39003.1| Int [Micromonospora rosaria]
          Length = 377

 Score = 92.8 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 57/348 (16%), Positives = 107/348 (30%), Gaps = 31/348 (8%)

Query: 27  KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGS 86
            G G R   P+  ++            +   R      R    T         + +    
Sbjct: 25  PGGGPRQNAPHTFKTKTDAHRWLTRVEADISRGTWLDDRAAGETFGNYARAILRDS--PK 82

Query: 87  LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE---SRKHTPSSAIQFLTSMRVL 143
           + V  R + E      +        R++T   +R             +S  Q    +R++
Sbjct: 83  IGVRWRETCERNLRLHLVPLVTVPLREVTASRVREWHAAALRGSGGRTSISQSYRFLRMV 142

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203
              AVR+  +A +PC        +       T   +       +   + R A     + G
Sbjct: 143 MNTAVREGIIARSPCQIPGAGTVRAAERPVATPAQVVALVE--AINPRYRTAVLIAAWCG 200

Query: 204 LRCSDSCRAGVQHLQNNIFSIKTQKTGTI-------------------ITVELPDGFMKL 244
           LR  +     V  +     +I  +K                        T+ +P   + +
Sbjct: 201 LRRGEIAGLRVADVDLTEHTITVRKARVEPLHDRGKAFDKDPKSEAGKRTIAIPPHVVPV 260

Query: 245 LAM---TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADA 300
           + +      GK+  F++ D   +        F     K G++  + H +R    T++A  
Sbjct: 261 IRLHLDEFAGKDRLFVSRDGSPLRGDTLYQAFVRARGKVGLDTLTFHDLRHTGQTLAAQT 320

Query: 301 GATAHELMATYGWKTVDQAETYTKGAD-RIRLGIKNSRRISSVVDSDD 347
           GAT  +LM   G  ++  A  Y    D R R   K    +++  D   
Sbjct: 321 GATLADLMKRLGHSSMAAARRYLHAVDGRDREIAKALSELAAHGDVAR 368


>gi|331652960|ref|ZP_08353965.1| putative lambdoid prophage Qin defective integrase [Escherichia
           coli M718]
 gi|331049058|gb|EGI21130.1| putative lambdoid prophage Qin defective integrase [Escherichia
           coli M718]
          Length = 431

 Score = 92.8 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 45/317 (14%), Positives = 97/317 (30%), Gaps = 64/317 (20%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK-ITTKHIRSGVESR-- 126
           T+K L  ++        +A  S  ++ +    I+   G+ +    I  + +    +    
Sbjct: 85  TIKELAEKFLALKE-TEVAKTSLNTYRAVIKNILSIIGEKNLASSINKEKLLEVRKELLT 143

Query: 127 --------------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
                           +  +   ++T++  +F++ V   Y+A NP   +   K       
Sbjct: 144 GYQIPKSNYIVTQPGRSAVTVNNYMTNLNAVFQFGVDNGYLADNPFKGISPLKESRTIPD 203

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK----- 225
           P ++E+  +         Q +  +   +Y+G+R  + C  G + +   N    I+     
Sbjct: 204 PISREEFIRLIDAC-RNQQAKNLWCVSVYTGIRPGELCALGWEDIDLKNGTMMIRRNLAK 262

Query: 226 --------TQKTGTIITV--ELPDGFMKLLAMTPIGKETFF------------------- 256
                      T  +I +     D     + +T + KE                      
Sbjct: 263 DRFTVPKTQAGTNRVIHLIKPAIDALRSQMTLTRLSKEHIIDVHLREYGRTEKQKCTFVF 322

Query: 257 -------INNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELM 308
                  + N             + A   +AG+ ++ ++  R   A  S  AGA    + 
Sbjct: 323 QPEVSARVKNYGDHFTVDSIRQMWDAAIKRAGLRHRKSYQSRHTYACWSLTAGANPAFIA 382

Query: 309 ATYGWKTVDQA-ETYTK 324
              G        + Y K
Sbjct: 383 NQMGHADAQMVFQVYGK 399


>gi|157412799|ref|YP_001483665.1| site-specific recombinase XerD [Prochlorococcus marinus str. MIT
           9215]
 gi|157387374|gb|ABV50079.1| Site-specific recombinase XerD [Prochlorococcus marinus str. MIT
           9215]
          Length = 321

 Score = 92.8 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 49/310 (15%), Positives = 93/310 (30%), Gaps = 25/310 (8%)

Query: 31  RRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLA-V 89
           RR     P   TF+   ++       +          P TL   I++Y         +  
Sbjct: 16  RRKNYVGPRSRTFLSRDLAQSWADAVEERTKKVLNVIPVTLGEAINDYINGPLLLHRSAE 75

Query: 90  NSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWA 147
           N +       +      GD     +  KH     + R  K  P++ ++ L  +RVL  WA
Sbjct: 76  NEKYPLRVMAESW---LGDIPLNDLQIKHFAVWRDKRLMKVKPNTVMRELRILRVLIDWA 132

Query: 148 VRQE--YVAINPCLSVERPKRKTEGIRPWTK-EDMQQFKSFWSEGSQPRLAFE-FLLYSG 203
             +    +  NP   +            +T  ++ +         ++  L      L +G
Sbjct: 133 RDERGAEIKNNPARHLRVRGTGDARAPFFTDQDEKKLLYELSQLSNKNHLRLTKLALTTG 192

Query: 204 LRCSDSCRAGVQHLQNNI-FSIKTQKT-------GTIITVELPDGFMKLLAMTPIGKETF 255
              S+      +++          +K          +  V LP+   K+L          
Sbjct: 193 FPRSELLSLTWRNIDLKKKLLYIYRKNCAATDNSSALRLVPLPEEAQKILEELQRRDGKV 252

Query: 256 FINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWK 314
              +     +       F     KAG+     H +R  + +     G  A E+ A  G +
Sbjct: 253 IELSKGSARHG------FDKARKKAGLETLRFHDLRHIAISRMWRCGMNALEISACSGHR 306

Query: 315 TVDQAETYTK 324
            +     Y+ 
Sbjct: 307 DIKMLMRYSH 316


>gi|83955392|ref|ZP_00964023.1| site-specific integrase/recombinase-like [Sulfitobacter sp.
           NAS-14.1]
 gi|83840036|gb|EAP79211.1| site-specific integrase/recombinase-like [Sulfitobacter sp.
           NAS-14.1]
          Length = 353

 Score = 92.8 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 53/330 (16%), Positives = 96/330 (29%), Gaps = 30/330 (9%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           RT+  ++  Y     G R R        F  A   A+          N+ R    TL   
Sbjct: 4   RTKKTRVYQYDIVVGGHRFRGSC-GTEDFEAA--KAVEADIRANAKRNAARGSDYTLSEA 60

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
           +  Y      G  +  +  S       +    G     K+T   I     + KH  + A 
Sbjct: 61  LGTYINDKIAGRPSEGTTKSQARVI--LSYMDGKKRISKLTDADITQY--AAKHRATCAN 116

Query: 135 QFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRP----WTKEDMQQFKSFWSEG 189
             +     +   A+R    +       ++    +T+  R      T ++  +  +   + 
Sbjct: 117 STVNRHLQMLGRALRHMGKIYKTEIPDIDLKAAETKEPRERVRELTTDEQTRLFAALPQE 176

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAM 247
             P +AF  +  +G R S       + +   N   S +  K   ++   +      LL+ 
Sbjct: 177 FHPIVAFALM--TGARISTITGLLWRDVDMPNREISFRL-KGDELMIFPINGELAALLSA 233

Query: 248 TPIG-----KETFFINNDKQKM-------NATQFSIWFKAKATKAGV-NKSAHGVRKFSA 294
            P       +   F   D           +   F   ++     AGV N   H +R   A
Sbjct: 234 LPKSNVMESRRYVFTRVDGHSAERIQIVASGGVFGTVWRKALLDAGVENFRFHDLRHTFA 293

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324
           T           +    G   ++    Y  
Sbjct: 294 TRMLRKTQNISLVSKLLGHTNIETTSRYAH 323


>gi|116625838|ref|YP_827994.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116229000|gb|ABJ87709.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 311

 Score = 92.8 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 49/274 (17%), Positives = 88/274 (32%), Gaps = 26/274 (9%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTK---HIRSGVESRKHTPSSAIQFLTSMRVLF 144
           +  S+ ++E   D  +           + +     R  +ESR   P++    L +MR L 
Sbjct: 32  SPASKRAYEFAIDDFVNWYCSEPRLAFSKRVVLRYRIELESRHLAPATINLRLAAMRRLA 91

Query: 145 KWAVRQEYVAINPCLSVERPKRKTE---GIRPWTKED-----MQQFKSFWSEGSQPRLAF 196
             A      +      + R K        +  W   +     ++   +   +G + R   
Sbjct: 92  FEAADTGLPSPELAAGIRRVKGAKRVGVRLENWLTAEQSRALLRAPDAQRLKGRRDRAML 151

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGFMKLLA-----M 247
             +L  GLR  +     + HLQ      + +    K   I TV +P      +       
Sbjct: 152 ALMLGCGLRRGEIAALRLDHLQQREDHSVIADLVDKAAHIRTVPVPGWVKAAVDEWVTSA 211

Query: 248 TPIGKETFFINND-----KQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG 301
                  F   +         +         KA A  AG+ K S H  R+  A +   AG
Sbjct: 212 AITDGRLFRCVSRKESVWGSGITEKVIWHVVKAAAAAAGIAKLSLHDCRRTCARLCHAAG 271

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335
               ++    G  +V+  E Y     R+R  + +
Sbjct: 272 GELEQIQFLLGHVSVETTERYLGCKQRLRSAVND 305


>gi|169834527|ref|YP_001695426.1| phage integrase family site specific recombinase [Streptococcus
           pneumoniae Hungary19A-6]
 gi|168997029|gb|ACA37641.1| site-specific recombinase, phage integrase family [Streptococcus
           pneumoniae Hungary19A-6]
          Length = 377

 Score = 92.8 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 40/276 (14%), Positives = 89/276 (32%), Gaps = 41/276 (14%)

Query: 90  NSR-ISFESYFDQ---IIRKSGDFDYRKI--TTKHIRSGVESRKHTP---SSAIQFLTSM 140
           N++  ++  +      ++   G   Y  I    +H+R  V      P   ++  + +  +
Sbjct: 85  NTQDNNYNKHIKDYFSMVDNVGKLTYEDIYQFREHLRQKVAKNSDKPLSTNTINKIMILL 144

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-EGSQPRLAFEFL 199
           + +F   +R+ Y   NP   +++   +   ++ WT ++ Q F + +  E    +L F  L
Sbjct: 145 KKIFDVGLRKGYYTSNPANLIKKLPIEKTKMQFWTVKEFQHFLTLFETEEYNIKLLFTVL 204

Query: 200 LYSGLRCSDSCRAGVQHLQ---------------NNIFSIKTQKTGTII-TVELPDGF-- 241
            ++GLR  ++     Q +                  I  + T KT      + +      
Sbjct: 205 FFTGLRLGEALALTWQDIDFTSNTIHITKSVYVNKGISHVSTTKTKAGTRRIIINKKLSH 264

Query: 242 --------MKLLAMTPIGKETFFINNDKQK--MNATQFSIWFKAKATKAG-VNK-SAHGV 289
                    K L                    +        +K    +   + K   H  
Sbjct: 265 ELQQWQQKQKHLLEQFTSDSMTLQVFQGSPITITKNAVENQYKKILERDSTLKKIRIHDF 324

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
           R   A++  + G     +    G  ++    +TY+ 
Sbjct: 325 RHSHASLLINQGEDYLVVKERLGHASITTTIDTYSH 360


>gi|53712460|ref|YP_098452.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|52215325|dbj|BAD47918.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
          Length = 371

 Score = 92.8 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 36/224 (16%), Positives = 76/224 (33%), Gaps = 12/224 (5%)

Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
            +    + + + +SA  + ++ R   K   R   +  N    +++   +       + E+
Sbjct: 145 AKKLRRNGRISQNSASGYWSTFRGFLKILYRNGLIKTNVNDFLDKIDTEDTMKEALSVEE 204

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-----QNNIFSIKTQKTGTII 233
           + Q      +    ++A  F   + LR SD      + +           I TQK     
Sbjct: 205 LYQLAETPCKKPIVKIASLFSCMTSLRISDILALRWEDIVDYSAGGKCVHIITQKNKAED 264

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRK 291
            + + +  + L+  +   K   F     + +      +  K     AG+ K  + H  R+
Sbjct: 265 IIPISEEALGLIGYSSEKKGLVF-----KGLMRCWTQVPMKEWIRSAGITKNITFHSYRR 319

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335
             AT+   AG     + +    K++     Y K  D  +    N
Sbjct: 320 TFATLQGAAGTDIRTIQSLMAHKSITTTMRYMKVVDSNKREASN 363


>gi|323153205|gb|EFZ39466.1| integrase [Escherichia coli EPECa14]
          Length = 362

 Score = 92.8 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 57/368 (15%), Positives = 111/368 (30%), Gaps = 61/368 (16%)

Query: 16  TRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKR---------EYINSPRK 66
            R+ K+ + +R     +       +        +       ++         E I S   
Sbjct: 6   KRNNKVYWRYRHPITGKNHGLGSIDQKLAETIAAEANSRLARQQMEQMLSLQEKIISDTG 65

Query: 67  KPTTLKWLISEYRKS----AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122
             +T+   ++ YRK        G + +N+     +       + G      IT K + S 
Sbjct: 66  GSSTVTIFLNNYRKIQQERYENGEIKLNTLKQKAAPLRVFDERFGTRPLDAITVKDVVSV 125

Query: 123 VESRKHTPSSAIQ--FLTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPWTKED 178
           +E  K    + +   F   +  +F+ A +   V    NP  S ++P+      +  T ++
Sbjct: 126 LEEYKARGHNRMGQIFRKVLIDVFREAQQTGDVPPGFNPAESAKKPQV-RISRQRLTFDE 184

Query: 179 MQQ-FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE- 236
               + +   +G   +      L +G R SD C+     +++    ++ QKTGT I +  
Sbjct: 185 WMMIYNAAEKDGYFLQRGMLLALMTGQRLSDICKMQFSDIRDGYLHVEQQKTGTRIAIPL 244

Query: 237 ----------------------LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274
                                 L    +         K           +     ++ FK
Sbjct: 245 ALRCDKLNLTLDDVVSSCRDCVLSPWLLHHHHAKGTAK-------RGGMVKPATLTVAFK 297

Query: 275 AKA-------TKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY--TKG 325
                        G   S H  R  S  +  + G     L    G       + Y   +G
Sbjct: 298 KARDSVDYNWRANGTPPSFHEQRSLSERLFREQGVDTKIL---LGHSNQKMTDIYNDARG 354

Query: 326 ADRIRLGI 333
            +  +L I
Sbjct: 355 KEWKKLVI 362


>gi|312887835|ref|ZP_07747422.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
 gi|311299654|gb|EFQ76736.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
          Length = 410

 Score = 92.8 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 45/299 (15%), Positives = 97/299 (32%), Gaps = 33/299 (11%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISF---ESYFDQIIRKSG----------DFDYRKITT 116
           +L  LI+ Y        L  ++   +   + Y  + +              DF + K   
Sbjct: 109 SLSRLIT-YHNETSTTDLKWSTLRHYYVTQRYLVKFLEDQHHASDIYLHQLDFKFVKDFE 167

Query: 117 KHIRSGVESRKHTPSSAIQFLT---SMRVLFKWAVRQEYVAINP--CLSVERPKRKTEGI 171
            ++R+        P +    +     ++ +   A+  +++  +P     ++  K   E +
Sbjct: 168 VYLRNHKPKDHQKPLNNNGVMKHIIRLKKMVNLALNLQWITNDPFATYKLKILKVNREQL 227

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKT 226
                 DM++ K         R  F F  Y+GL   D       H+              
Sbjct: 228 SEKELADMEKKKLSIERLDMVRDMFVFCCYTGLSYVDMINLTPGHIIAGSDGERWIRTCR 287

Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM---NATQFSIWFKAKATKAGVN 283
           +KT   + V L    + +L        +    ++ +     +  + + + K  A   G+ 
Sbjct: 288 EKTLIPVNVPLLPQALTILDKYKDNIRSL---SNGRVFPTVSNQKVNSYLKEIADLCGIT 344

Query: 284 K--SAHGVRKFSAT-ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
           K  + H  R   AT ++   G     +    G   +   + Y K  +R      N+ ++
Sbjct: 345 KNVTFHIARHTFATTVTLSNGVPIETVSKILGHTKITTTQIYAKVVERKLKEDMNALKL 403


>gi|303237002|ref|ZP_07323575.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
 gi|302482811|gb|EFL45833.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
          Length = 421

 Score = 92.8 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 45/268 (16%), Positives = 96/268 (35%), Gaps = 23/268 (8%)

Query: 93  ISFESYFDQIIRKSGDFD-----YRKITTKHIRS-GVESRKHTPSSAIQFLTSMRVLFKW 146
                 F   ++K G  D       K   +H R   +    +  S+    L  +  + + 
Sbjct: 137 RDSRKNFALFLKKRGSGDCLPKEADKDLIEHYRLFMLRDLGNKESTVSNRLRHLHQVIRK 196

Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS---QPRLAFEFLLYSG 203
           A+++ Y+  +P   ++  +  T      T +D+ +  S+    S     RL F    ++G
Sbjct: 197 ALQERYIREDPFEQID-IETPTYERNALTSDDLHKLLSYRPHRSVDNHCRLIFLLGCFTG 255

Query: 204 LRCSDSCRAGVQHL---QNNI--FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFIN 258
           L  SD  +  +  +    +     S+   KT     V L     ++L +   G++   + 
Sbjct: 256 LAFSDLKKLRMDDVYTLDDGRRYISLCRTKTQNRSIVPLLPIAEEILTIVSDGQKEGLL- 314

Query: 259 NDKQKMNATQFSIWFKAKATKAGVN----KSAHGVRKFSATIS-ADAGATAHELMATYGW 313
             ++    + F+   +    KAG+      ++H  R   AT    + G     +    G 
Sbjct: 315 -FREFPTNSHFNRKIRDIIIKAGLPPHTEATSHTARHTFATTICLENGLPIETVSKMLGH 373

Query: 314 KTVDQAETYTKGADRIRLGIKNSRRISS 341
           + +   E Y K   + ++  +    + S
Sbjct: 374 RFISTTELYAK-VSKSKIAREMQPLMGS 400


>gi|227431825|ref|ZP_03913850.1| bacteriophage integrase [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
 gi|227352415|gb|EEJ42616.1| bacteriophage integrase [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
          Length = 373

 Score = 92.8 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 51/272 (18%), Positives = 91/272 (33%), Gaps = 39/272 (14%)

Query: 101 QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
            II + GD     IT   ++  V + +       +     R L   AVR + + ++P   
Sbjct: 99  HIISEWGDTLVTDITPIKLQRYVNTLQGKLLRYRKVAGYFRRLLNIAVRMDMIPVDPFTK 158

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSE--------GSQPRLAFEFLLYSGLRCSDSCRA 212
           +E PK + +  +P    ++ +FK+F             Q        +++G+R  +    
Sbjct: 159 IEMPKERRQVNKPKQFMEVDEFKAFVDVLDNQYKYMNQQAYTLLRLAVFTGMRTEEILAL 218

Query: 213 GVQHLQ--NNIFSI-----------------------KTQKTGTIITVELPDGFMKLLAM 247
             QH+       SI                       +T K    + V L D F      
Sbjct: 219 QWQHIDFNGGYISIVQALGRGLAGSTYIKEPKSQTSRRTLKIENKMMVVLADWFEATGYN 278

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAG--VNKSAHGVRKFSATISADAGATAH 305
                  +   N+   +   + + W ++ + K G  V  S H +R   AT++ D GA   
Sbjct: 279 KSDD---YVFQNEGHTLQTIRPNKWLRSVSDKYGVAVGLSMHKLRHTWATLAIDQGANIK 335

Query: 306 ELMATYGWKTVDQA-ETYTKGADRIRLGIKNS 336
           ++    G   V      Y+    R      N 
Sbjct: 336 QVQTYLGHADVSMTLNIYSDVTKRASDATGNI 367


>gi|189467606|ref|ZP_03016391.1| hypothetical protein BACINT_03996 [Bacteroides intestinalis DSM
           17393]
 gi|189435870|gb|EDV04855.1| hypothetical protein BACINT_03996 [Bacteroides intestinalis DSM
           17393]
          Length = 330

 Score = 92.8 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 37/270 (13%), Positives = 89/270 (32%), Gaps = 14/270 (5%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE- 124
           +   T   L+  +  +         +   + S   Q+++K         +T+ IR+ +  
Sbjct: 47  EDTATNDRLLEIFLSAKQVEGCTTPTIKYYSSTIKQLLKKMPKK-VVDYSTEDIRAYLAV 105

Query: 125 ---SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
                K +  +           F W   ++Y+  +P   + + K  T+     T E+++ 
Sbjct: 106 FQRKNKSSKVTIDNIRRIFSSFFAWLEEEDYIIKSPIRRIHKVKTGTQVKEILTDENIEH 165

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDG 240
            +    +  +     + L  +G+R  +  +   + +  N    I   K      V     
Sbjct: 166 LRDNCIK-IRDLAMIDLLASTGMRVGELVKLDREDINFNERECIVFGKGNKERIVYFNAR 224

Query: 241 ----FMKLLAMTPIGKETFFINNDKQK--MNATQFSIWFKAKATKAGVNK-SAHGVRKFS 293
                 + L+      +  F++  K    +  +      +    +A + +   H  R+  
Sbjct: 225 AKIHLQQYLSTRKDRNKALFVSLAKPHNRLQISGVETRLRKIGRQAKIVRVHPHKFRRTL 284

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYT 323
           AT++ D G    ++    G   +D    Y 
Sbjct: 285 ATMAIDKGMPVEQVQKLLGHVKIDTTMHYA 314


>gi|110834925|ref|YP_693784.1| shufflon-specific DNA recombinase [Alcanivorax borkumensis SK2]
 gi|110648036|emb|CAL17512.1| rci [Alcanivorax borkumensis SK2]
          Length = 367

 Score = 92.8 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 41/240 (17%), Positives = 84/240 (35%), Gaps = 17/240 (7%)

Query: 101 QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEY---VAINP 157
           +II K  D     +  K  +   + R  +P++    L  +  +F  A+ +E+   +  NP
Sbjct: 106 EIIAKYRDERLAGLDRKDAKGNPDPRPRSPNTVRLDLALLGHMFTTAI-REWGIGLPSNP 164

Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQ 215
             ++ RP       R   + +  +  +     S P L       L +G+R ++       
Sbjct: 165 VQNIRRPAPPPGRERRLNQTEEDRLIAAVDSHSNPMLGWIVRLALETGMRSAEITTLRRN 224

Query: 216 HLQNNIFSIK--TQKTGTIITVELPDGFMKLLAMT------PIGKETFFINNDKQ--KMN 265
            +      ++    K     TV L      +L         PI  +  F     +  +  
Sbjct: 225 QIDLKRRVVRLLETKNTAPRTVPLSSTATAILQEALANPVRPIDTDLVFFGEPGRDGQRR 284

Query: 266 ATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              F+  +      AG+     H +R  + +   + G +  ++ A  G K++   + YT 
Sbjct: 285 PYNFNKPWLKAKETAGMKELHFHDLRHEAVSRLVEGGLSDQQVAAISGHKSMQMLKRYTH 344


>gi|325851900|ref|ZP_08171033.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
 gi|325484677|gb|EGC87591.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
          Length = 417

 Score = 92.8 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 44/268 (16%), Positives = 96/268 (35%), Gaps = 23/268 (8%)

Query: 93  ISFESYFDQIIRKSGDFDY------RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKW 146
                 F Q ++  G+ DY      + +   +    +    +  S+    L  +  + + 
Sbjct: 137 RDSRKSFVQFLKTRGNEDYLPKEADKDLIESYRLFMLRDLGNKESTVSNRLRHLHQVIRK 196

Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS---QPRLAFEFLLYSG 203
           A ++ Y+  +P   ++  +  T      T +D+ +  S+    S     RL F    ++G
Sbjct: 197 AQQERYIREDPFELID-IETPTYERNALTSDDLHKLLSYRPHRSVDNHCRLIFLLGCFTG 255

Query: 204 LRCSDSCRAGVQHL---QNNI--FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFIN 258
           L  SD  +  +  +    +     S+   KT     V L     ++L +   G++   + 
Sbjct: 256 LAFSDLKKLRLDDVYTLDDGRRYISLCRTKTQNRSIVPLLPIAEEILTIVSDGRKEGLL- 314

Query: 259 NDKQKMNATQFSIWFKAKATKAGVN----KSAHGVRKFSATIS-ADAGATAHELMATYGW 313
             ++    + F+   +    KAG+      ++H  R   AT    + G     +    G 
Sbjct: 315 -FREFPTNSHFNRKIRDIIIKAGLPPHTEATSHTARHTFATTICLENGLPIETVSKMLGH 373

Query: 314 KTVDQAETYTKGADRIRLGIKNSRRISS 341
           + +   E Y K   + ++  +    I S
Sbjct: 374 RFISTTELYAK-VSKSKIAREMQPLIGS 400


>gi|307694226|ref|ZP_07636463.1| Phage integrase [Ruminococcaceae bacterium D16]
          Length = 312

 Score = 92.8 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 50/298 (16%), Positives = 97/298 (32%), Gaps = 42/298 (14%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVES----- 125
            WL + Y   A   ++   +   ++   +   I + G+   +K+TT+H++   +      
Sbjct: 3   SWLRTWYELYAK-PNVRTATANRYKLIIETYTIPRIGNIKLKKLTTRHLQKLYKELLECG 61

Query: 126 RKHTPSSAIQFLTSMRVLFKW---------AVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
           R H   +  + L++  V             AV++  +  NPC     PK +   ++    
Sbjct: 62  RIHVGKNQDKGLSTTTVHSVHLMLHCALDRAVKERLIPRNPCEDYIVPKPRKLEMKILPP 121

Query: 177 EDMQQFK-SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----------------N 219
           E ++ +  +  + G  P   F   L SGLR  +        L                 +
Sbjct: 122 EHIKAYLDAAEARGLLP--MFYLELVSGLRKGELVALRWDDLDIQQRVISVSKQYVRNPD 179

Query: 220 NIFSIKTQKTGTIIT-VELPDGFMKLL---AMTPIGKETFFIN-NDKQKMNATQFSIWFK 274
               +   KT   +  V +P   + LL             F +    +  +        K
Sbjct: 180 GSLELTRPKTENSVRLVSIPQTAVDLLIQEHSKHPDSPYMFPSPLTGEMYHPDSVVNLHK 239

Query: 275 AKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADRIR 330
                AG+ +   H +R   AT +   G     + +  G         TYT    + +
Sbjct: 240 KILMDAGLEHLRFHDLRHTFATTALQNGVDVKTVSSMLGHFDAGFTLRTYTHATRQKQ 297


>gi|329920468|ref|ZP_08277200.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners SPIN 1401G]
 gi|328936144|gb|EGG32597.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners SPIN 1401G]
          Length = 413

 Score = 92.8 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 59/354 (16%), Positives = 110/354 (31%), Gaps = 42/354 (11%)

Query: 9   PFVTKERTRHGKIIYYF---RKGHGRRIRLPYPHE---STFIPAYMSALTGSTPKREYIN 62
            +    +   GK  Y     R  +G+++      +     F  A  +++  S  K+ Y+N
Sbjct: 5   KYANVYKDSKGKYYYNVFLGRNSNGKQVFKKGRGDALGHPFTSARAASIEASRIKQLYLN 64

Query: 63  SPRKKPTTLKWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121
                  +    + E R    +   +  ++  +    F + +    D   + I+      
Sbjct: 65  ID-LNDISYAHFMKE-RFMPKYKGDVEASTYDTHSRMFFKAVNFFADERLKDISVAECEK 122

Query: 122 GVESR----KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
                     ++ S A    TS R    +AV    +  NP +  +   +     + WTKE
Sbjct: 123 YRTWLLTNSGYSQSYASLIYTSFRQSLDYAVEINLITTNPSMKTKAVPKGKGIEKYWTKE 182

Query: 178 DMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-------- 225
           + ++  +  +  S       + F F    G R S+        +      ++        
Sbjct: 183 EFEKVLACINTDSFYENLIYVTFLFYYRIGCRVSEGFSLKWSDIDLTNGRVRIFHNLHYK 242

Query: 226 --------------TQKTGTIITVELPDGFMKLLAMTPIGKET-FFINNDKQKMNATQFS 270
                           K    I  EL                T F ++ D    N +  S
Sbjct: 243 NKLEYEIKPYTKTNAGKRTVTIDNELLQVLKDWKKRQKKHGVTDFVLSYDNCPNNKSTLS 302

Query: 271 IWFKAKATKAGVNK-SAHGVRKFSATIS-ADAGATAHELMATYGWKTVDQAETY 322
            W K  A  AGV +    G+R  +A+   A+ GA    +    G K+      Y
Sbjct: 303 TWLKRYAKLAGVARIDGRGLRHSNASYLIAEMGADVLTVAHRLGHKSPTVTLQY 356


>gi|309810139|ref|ZP_07703985.1| phage integrase, N-terminal SAM domain protein [Lactobacillus iners
           SPIN 2503V10-D]
 gi|308169638|gb|EFO71685.1| phage integrase, N-terminal SAM domain protein [Lactobacillus iners
           SPIN 2503V10-D]
          Length = 326

 Score = 92.8 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 40/264 (15%), Positives = 87/264 (32%), Gaps = 14/264 (5%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----K 127
              I+ +  +      +  S   +ES   ++  K G  D R ITT+ IR  + +     K
Sbjct: 49  ADYIALFLAAKKIEGRSEKSLKYYESTILKMTEKVG-KDARYITTEDIREYLSNYQLNHK 107

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            +  +       +   F W   ++Y+  +P   + + K        ++ E+++  +   +
Sbjct: 108 SSKVTIDNIRRILSSFFSWLEDEDYILKSPVRRIHKVKTGQSIKETYSDEELEIMRDSCT 167

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG-----FM 242
           +  +     + L  +G+R  +        +            G    +   D        
Sbjct: 168 K-IRDLAIIDMLASTGMRVGEMVLLNRDDVNFEERECMVFGKGDKERIVYFDARTKLHLE 226

Query: 243 KLLAMTPIGKETFF--INNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISAD 299
           K L          F  ++   +++         +    + G+ K   H  R+  AT + D
Sbjct: 227 KYLDSRTDNNSALFTSLSAPHERLGIAGIEARLRKLGGELGIYKVHPHKFRRTLATKAID 286

Query: 300 AGATAHELMATYGWKTVDQAETYT 323
            G    +L    G + +D    Y 
Sbjct: 287 KGMPIEQLQKLLGHQRIDTTLQYA 310


>gi|325678006|ref|ZP_08157645.1| site-specific tyrosine recombinase XerC [Ruminococcus albus 8]
 gi|324110286|gb|EGC04463.1| site-specific tyrosine recombinase XerC [Ruminococcus albus 8]
          Length = 326

 Score = 92.8 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 38/246 (15%), Positives = 95/246 (38%), Gaps = 18/246 (7%)

Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGIRPWT 175
           +++    + R++  ++  +  TS++  +++ A +   ++ +   S+E P  K    +  T
Sbjct: 81  QYMVWLKDERQNGVAARARKTTSLKQFYEYLANKSHLISKDNISSLEVPNVKRALPKYLT 140

Query: 176 KEDMQQFKS--FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTI 232
            +++Q   S        +        L  G+R S+ C   +  +     +++   K    
Sbjct: 141 LDEVQTLLSSIRTKNTERDYCIITLFLNCGMRLSELCGININDIAFENKTLRLLGKGRKE 200

Query: 233 ITVELPDGFMKLLAM-TPIGKE--------TFFINNDKQKMNATQFSIWFKAKATKAGVN 283
             + L D  +K +    P  K           F+++ K +++  +     +     AG+ 
Sbjct: 201 RIIYLNDNCIKAIEQYLPYRKNYEMAQNEKALFLSSRKNRISRRRVQKIIEECIFAAGLK 260

Query: 284 ---KSAHGVRKFSATISADA-GATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSRR 338
               + H +R  +AT+  +  G     +    G ++    E YT  G+D+++  +     
Sbjct: 261 NTGVTTHKLRHTAATLMYNNNGGDILAVKEILGHESTSTTEIYTHLGSDKMKNTMNVMED 320

Query: 339 ISSVVD 344
           +    D
Sbjct: 321 LLKKKD 326


>gi|239949848|gb|ACS36646.1| phage-like integrase [Pseudomonas aeruginosa PAO1]
          Length = 333

 Score = 92.8 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 40/325 (12%), Positives = 87/325 (26%), Gaps = 35/325 (10%)

Query: 15  RTRHGKIIY---YFRKGH-GRRIRLPYPHESTFIPAYMS---ALTGSTPKREYINSPRKK 67
             R     +   ++  G  GRRIR       +    Y     A+ G T +          
Sbjct: 2   TVRKDGKTWTADFYENGRSGRRIRKKGFATKSAAIRYEQDFFAVKGETGRPLDDR----- 56

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR- 126
              L  L+  +          +       +  + + ++ G+    +  +       + R 
Sbjct: 57  ---LSDLVKVWY---DLHGCTLKDGKQRLARCEALAKRLGNPLAFEFDSLAWARYRQRRL 110

Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
            +  P +       +  +F   +R   +   NP   V + K     +   + + + +   
Sbjct: 111 TEVKPETVNHEQRYLSAVFSELIRLGSWHKENPLGKVRQIKTDQVELTFLSLDQVARLLE 170

Query: 185 FWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
                +           L +G R  ++       +          K     +V +PD   
Sbjct: 171 ECKASTNNHTYPVALLCLATGARWEEAESLTRGAVHGGKVHYHRTKNRQSRSVPIPDELE 230

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISAD 299
           +L+         F +               F+    + G     +  H +R   A+    
Sbjct: 231 RLI---------FKVGMPGSGRLFMSCRAAFRCAYQRCGFQTPGQMTHILRHTFASHYMM 281

Query: 300 AGATAHELMATYGWKTVDQAETYTK 324
            G     L    G  ++     Y  
Sbjct: 282 GGGDILTLQRILGHSSITMTMRYAH 306


>gi|218690783|ref|YP_002398995.1| Integrase [Escherichia coli ED1a]
 gi|218428347|emb|CAR09275.2| Integrase [Escherichia coli ED1a]
          Length = 338

 Score = 92.8 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 48/323 (14%), Positives = 92/323 (28%), Gaps = 45/323 (13%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87
            +G+R+R           A+ S       K+ ++     +   L  LI +      W SL
Sbjct: 20  RNGKRVR-KQFATKGEAIAFESFTMEEVNKKPWLGEKEDRRH-LSELIEQ------WYSL 71

Query: 88  AVNSRISFESY---FDQIIRKSGDFDYRKITTKHIRSGVESRKH--------------TP 130
              +    +        I    GD    ++T        E+R                 P
Sbjct: 72  YGQTLADPKRLIAKLRIICNGLGDPIASELTAGDFTKYREARLKGEVRNEDGTFMSPVKP 131

Query: 131 SSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            +      ++  +F    +   + A NP   +   K     +   T E++++     ++ 
Sbjct: 132 RTVNLEQRNLSSVFGTLKKLGHWSAPNPLAGLPTFKIAESELAFLTPEEIKRLLDACADS 191

Query: 190 --SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
             S   L  +  L +G R S++       +     +    K     TV +     + L  
Sbjct: 192 QSSSLLLIAKICLATGARWSEAENLQSHQVSKYRITYTKTKGKKNRTVPISKDLYEELPK 251

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS----AHGVRKFSATISADAGAT 303
                      N  +          F+    +AG++       H +R   A+     G  
Sbjct: 252 -----------NRGKLFTP--CRKAFERAVKRAGIDLPEGQCTHVLRHTFASHFMMNGGN 298

Query: 304 AHELMATYGWKTVDQAETYTKGA 326
              L    G   +     Y   A
Sbjct: 299 ILVLRDILGHSDIKMTMVYAHFA 321


>gi|163851883|ref|YP_001639926.1| integrase family protein [Methylobacterium extorquens PA1]
 gi|163663488|gb|ABY30855.1| integrase family protein [Methylobacterium extorquens PA1]
          Length = 415

 Score = 92.8 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 41/299 (13%), Positives = 89/299 (29%), Gaps = 19/299 (6%)

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK 113
            + +R       K   T+K     Y  +A    L  ++  +  ++  Q  R         
Sbjct: 102 RSARRVERAERTKAALTVKEAFDLYTAAAE-ERLRPSTLANLRTHLSQHWRGLHALPLAS 160

Query: 114 ITTKHIRSGVESRKH------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167
           +    +   +            P +A++   ++  ++ WA+ ++    NP      P  +
Sbjct: 161 VRRADVAEQLRKIARPAPDGSGPQAALRARRTLSTVYVWAIGEDLAETNPVTGTNPPAVE 220

Query: 168 TEGIRPWTKEDMQQF-KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK- 225
               R  T +++    ++    G   R+     L +G R  +        +       + 
Sbjct: 221 VRRERVLTDDELSAMWRACPPTGDYSRIIRLLAL-TGARRDEVAELQWGEIDTAAAVWRL 279

Query: 226 ---TQKTGTIITVELPDGFMKLLAMTPI-GKETFFINNDKQKMNATQFSIWFKAKATKAG 281
                K G    + L    + +LA TP      +   + +   +    S     +    G
Sbjct: 280 PAARSKNGRPHVMHLSGPALDILAATPRIDGRPYVFGSGRGPFSGFSKSKARLDRQLGFG 339

Query: 282 VNKSAHGVRKFSATISADAGATAHELMATYGWKTVD---QAETYTK--GADRIRLGIKN 335
                H +R+  AT  A  G     +       +         Y +   A   R+ +  
Sbjct: 340 EPWVVHDLRRTVATGMARLGTPIEVVEKALNHVSGTFGGLVGIYQRFDYAAERRIALDA 398


>gi|99082221|ref|YP_614375.1| site-specific tyrosine recombinase XerC [Ruegeria sp. TM1040]
 gi|99038501|gb|ABF65113.1| phage integrase [Ruegeria sp. TM1040]
          Length = 311

 Score = 92.8 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 39/236 (16%), Positives = 77/236 (32%), Gaps = 19/236 (8%)

Query: 107 GDFDYRKITTKHIRSGVESRKHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVER 163
           G    R+ITT  +R+ + S + + + A    + L++++  + W  ++E       LS   
Sbjct: 58  GLGALRQITTADMRAWMASARSSGTGARSLARKLSAVKKFYGWLAKREGFEPTAVLSTRA 117

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGS-------QPRLAFEFLLYSGLRCSDSCRAGVQH 216
           PK + +  RP  ++  +         S       +       L   GLR S++     + 
Sbjct: 118 PKFQKKLPRPLDQDAARAMIDTVELQSQKDWVSARDVAVVTLLYGCGLRISEALGLLGKD 177

Query: 217 LQNNIFSIKTQKTGTIITVELPDGFMKLLAM-------TPIGKETFFINNDKQKMNATQF 269
                      K G    V +     + +                 F       ++A   
Sbjct: 178 APLPATLRIKGKGGKERVVPVLPAAQQAVERYLALCPHPKEAHLPLFRGVRGGALHARMI 237

Query: 270 SIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
                    + G+  +A  H +R   AT   +AG     +    G  ++   + YT
Sbjct: 238 QGVMAGARRQLGLPATATPHALRHSFATHLLEAGGDLRAIQELLGHASLSTTQAYT 293


>gi|329963222|ref|ZP_08300959.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
 gi|328528918|gb|EGF55858.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
          Length = 308

 Score = 92.8 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 37/307 (12%), Positives = 99/307 (32%), Gaps = 38/307 (12%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFD-YRKITTKHIRSGVESRK 127
           +++ +   +R+      +  ++  ++    +  ++   G+ D   +   +       +  
Sbjct: 5   SIREIAMAWREDKR-PYVKQSTFAAYMLILENHLLPYFGESDALSEKAVQDFVLQKLNGG 63

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL-SVERPKR-KTEGIRPWTKEDMQQFKSF 185
            +  S    L  ++++ K+ V+ E++  N     ++ P   K + +   T    ++   +
Sbjct: 64  MSVKSVKDILIVLKMVMKFGVKHEWM--NYSEWDIKYPTTEKNKELEVLTVAHHKKILDY 121

Query: 186 WSEGSQPR-LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT---------- 234
             +    R L     L +GLR  + C      +  +  +I  Q+T   I           
Sbjct: 122 IRQNFTFRNLGIYISLSTGLRIGEVCALRWSDIDVDSGTISVQRTIERIYIIEGEMKHTE 181

Query: 235 --------------VELPDGFMKLLAMTP--IGKETFFINNDKQKMNATQFSIWFKAKAT 278
                         + +    + L+      +  + + + N+        +  ++K    
Sbjct: 182 LVINTPKTKNSCREIPMSKELLALVKPLKKVVNADYYILTNEPLPTEPRTYRNYYKRLME 241

Query: 279 KAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK--GADRIRLGIK 334
             G+ K   HG+R   AT   ++      +    G   +      Y       + R   K
Sbjct: 242 HLGIPKLKFHGLRHSFATRCIESNCDYKTVSVLLGHSNISTTLNLYVHPNMEQKKRCIAK 301

Query: 335 NSRRISS 341
             + +  
Sbjct: 302 MFKSLGK 308


>gi|325855399|ref|ZP_08171832.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
 gi|325483836|gb|EGC86790.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
          Length = 344

 Score = 92.8 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 53/260 (20%), Positives = 93/260 (35%), Gaps = 26/260 (10%)

Query: 84  WGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRSGVESRKHTP-----------S 131
           +  LA    I ++  +       +G   + ++     R  +E     P           +
Sbjct: 92  FKGLADRKNIKWQHVYKHFQRFVNGKCTFEEVDVDLCRKFMEYLLDAPQSIHTNQKLHIN 151

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           SA  + ++ R +   A R   +  NP   ++R +         ++E++ +      E   
Sbjct: 152 SAAGYWSTFRAVLHTAYRDRKIKENPNGFLDRIECIPTIREHLSQEELIRLAETPCEEEV 211

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQ---NNIFSIKT--QKTGTIITVELPDGFMKLLA 246
            + AF F   +GLR SD  +   Q +Q   N    + T  QKT  I+   + D    LL 
Sbjct: 212 LKKAFLFACLTGLRKSDIRQLTWQQIQPYTNGRMFVTTRMQKTKEIVHNPISDEAYGLLG 271

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATA 304
                 E     + K KM       W     T AG+ K  + H  R    ++  + G   
Sbjct: 272 E---RGEGLIFEDFKDKMLQGPLQRWL----TAAGITKKITFHCTRHSFGSLHVEMGTDM 324

Query: 305 HELMATYGWKTVDQAETYTK 324
             + A  G K +   + Y+K
Sbjct: 325 AVIQAYLGHKNITTTQIYSK 344


>gi|268609721|ref|ZP_06143448.1| integrase/recombinase, putative [Ruminococcus flavefaciens FD-1]
          Length = 414

 Score = 92.8 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 45/265 (16%), Positives = 90/265 (33%), Gaps = 34/265 (12%)

Query: 96  ESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSSAIQFLTSMRVLFKWAVRQEYVA 154
             + D +   +G   + +IT +HI   +   K+ +  +    +  ++ LF +        
Sbjct: 144 RRFIDHLS-SAGITSFEQITYEHIEKYLLQYKNNSIKTRGCMVNYLKKLFGYLYGSGITD 202

Query: 155 IN-----PCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFEFLLYSGLR 205
            +     P L + R    +     WTKE++    +        G +    F   +++GLR
Sbjct: 203 DDLREYLPKLRIPR---SSGIPHTWTKEELTALLNAIDREDPAGKRNYAVFLLTIHTGLR 259

Query: 206 CSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFM-KLLAMTPIGK-----ETFFI 257
             D     + ++   +    +   KT   I + + D     ++     G+     +  F+
Sbjct: 260 AGDIRNLRLSNIDWESKTIHLIMGKTTQPIDLPMSDAVGWSIIDYLKNGRPNTKSDHVFV 319

Query: 258 NNDKQKMNA----TQFSIWFKAKATKAGVNKSA------HGVRKFSATISADAGATAHEL 307
            +      +                KAG+ K        H +R   A     +GA    +
Sbjct: 320 RHRA-PFTSIRGTAALDSAINRYLFKAGIAKKPGEHYGMHSLRSTLARNMLTSGAALATI 378

Query: 308 MATYGWKTVDQAETYTKGA-DRIRL 331
             T G +     E Y K + D +RL
Sbjct: 379 SQTLGHEDSKSTEIYLKTSIDDLRL 403


>gi|260495435|ref|ZP_05815561.1| site-specific recombinase [Fusobacterium sp. 3_1_33]
 gi|260196972|gb|EEW94493.1| site-specific recombinase [Fusobacterium sp. 3_1_33]
          Length = 396

 Score = 92.8 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 37/292 (12%), Positives = 87/292 (29%), Gaps = 47/292 (16%)

Query: 93  ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFL----TSMRVLFKWAV 148
              +   ++   +  + D   +T  +I            +    +      +R  F  A 
Sbjct: 106 KDQQRIIEKFFSQK-NLDLEAVTVANILDFYNHLSIVRKNTNNTIIHYHALLRKTFTEAH 164

Query: 149 RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD 208
            ++ +  N  L + RPK++      +  +++  F ++   G +  L     L+ G R S+
Sbjct: 165 IRKLIKENIMLEIPRPKKEKYISEVFNLKEINTFLNYIK-GHKFELELNLALFYGFRRSE 223

Query: 209 SCRAGVQ--HLQNNIFSIKT-------------QKTGTIITVELPDGFMKLLAM------ 247
                       NN   + T             QK     +  +      +  +      
Sbjct: 224 LLGLRFSVIDFDNNTILVNTKITSSEEEKLVAKQKMKNDSSYRIMPLLASIKELIIQRVE 283

Query: 248 TPIGKETFFINNDKQKM-------------NATQFSIWFKAKATKAGVNK-SAHGVRKFS 293
                + FF ++  +K                 + +  F+    + G+ K   H +R   
Sbjct: 284 RIKKDKNFFKSSYTKKWEGFICVDEDGELIKPDRVTKTFRRLIKECGLKKIRLHDLRHSC 343

Query: 294 ATISADAGATAHELMATYGWKTVDQAET------YTKGADRIRLGIKNSRRI 339
           AT+  +      ++    G   +           YT+      +  K+ + +
Sbjct: 344 ATLLYEQDIQLKDIQMWLGHSDIQTTANIYSHFDYTRKEKTGEIIEKSLKNL 395


>gi|228950288|ref|ZP_04112465.1| hypothetical protein bthur0007_63540 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228809450|gb|EEM55894.1| hypothetical protein bthur0007_63540 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
          Length = 278

 Score = 92.8 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 30/264 (11%), Positives = 82/264 (31%), Gaps = 23/264 (8%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVE---SRKH 128
           ++  +         +  +   +        +  G  + D  + +   ++  ++   S+K 
Sbjct: 3   ILDSFINHEKEHGKSPETIRGYHYKLLHFEKWLGAVETDLYEFSRSDVQQYLDDLTSQKK 62

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           + S+      ++R   ++A + + +       V+ P    E      ++++ +       
Sbjct: 63  SASTVNGHYAAIRSFSQFAKKTDCIKD--IRIVKAPNLYREAPVALERKEVLRILREVDR 120

Query: 189 --GSQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDGFM 242
               + +      +Y+G+R ++     +  +    +     ++  K      + L     
Sbjct: 121 SGNKRDKAILLTCVYAGIRVAEIVSLDIDDISFSERQGTIRVRQGKGNKERIIPLHKEAR 180

Query: 243 ----KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISA 298
                 L          F++N + +++             K GVN   H  R    T   
Sbjct: 181 YAISDYLKTRESTAAALFLSNRQTRISKRTVQ----HICNKYGVN--PHQFRHTFVTDLV 234

Query: 299 DAGATAHELMATYGWKTVDQAETY 322
           DAG     +    G ++      Y
Sbjct: 235 DAGIDDKTIQTLTGHESPAMITRY 258


>gi|167625815|ref|YP_001676109.1| tyrosine recombinase XerC [Shewanella halifaxensis HAW-EB4]
 gi|167355837|gb|ABZ78450.1| tyrosine recombinase XerC [Shewanella halifaxensis HAW-EB4]
          Length = 303

 Score = 92.8 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 34/270 (12%), Positives = 90/270 (33%), Gaps = 21/270 (7%)

Query: 73  WL--ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVESR 126
           WL     Y ++     ++  +  ++     ++ +   +       +  + + I + +  +
Sbjct: 12  WLSSFERYLRTER--QVSAYTVRNYLFELKRVEKLFSETESWLSQQHDSLQAILAKLHRK 69

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR---PWTKEDMQQFK 183
             +P S    L+S++  +++ +R++ + INP +S+  PK+     +     +   +    
Sbjct: 70  GLSPRSLSLTLSSLKQFYEFLLREQQLKINPAISLTAPKQGKPLPKNMDVDSVSHLLDID 129

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFM 242
           +      + +   E    SGLR  +        +Q +   +K   K      V +    +
Sbjct: 130 ANDPLSFRDKAIMELFYSSGLRLGELAALNAADIQFSEAQVKVLGKGSKERIVPIGKLAL 189

Query: 243 KLL-------AMTPIGKETFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSAHGVRKFS 293
             +              +  F+    +++                  G+    H +R   
Sbjct: 190 AAITQWLEIKRDIACEGDALFVTAKGKRLAHRSIQARLAKWGQEQAIGMKVHPHKLRHSF 249

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYT 323
           AT   ++ A    +    G   +   + YT
Sbjct: 250 ATHMLESSADLRAVQELLGHANLSTTQVYT 279


>gi|124008022|ref|ZP_01692721.1| integrase [Microscilla marina ATCC 23134]
 gi|123986436|gb|EAY26242.1| integrase [Microscilla marina ATCC 23134]
          Length = 382

 Score = 92.8 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 52/278 (18%), Positives = 100/278 (35%), Gaps = 36/278 (12%)

Query: 88  AVNSRISFESYFDQIIRKSG-DFDYRKIT---TKHIRSGVESRKHTPSSAIQFLTSMRVL 143
              +  +++  ++ I +    DF + K+     K   + + +R +T       + S+R +
Sbjct: 100 KAGTLKAYKDAYNTIKKYHPKDFSFDKLNYNLLKGFETELFARGNTAGGISVRMRSIRAI 159

Query: 144 FKWAVRQEYV--AINPCL--------SVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
           +  AVR+ Y     NP          ++ + K K    +  T+E++Q+FK F  +G    
Sbjct: 160 YYEAVRRGYAKKETNPYSTTTNKDGYAISKLKSKKN-PKSLTEEELQKFKDFDVDGFPDL 218

Query: 194 L------AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
                   F F L+ G+   D C     +L N       QKTG   ++ + D  ++++  
Sbjct: 219 ANSWRYFMFSFKLF-GINFIDICNLQSSNLTNGRLQYVRQKTGKQFSLLVTDEVLEIIEH 277

Query: 248 TPIGKETFFINND---------KQKMNATQFSIWFKAKATKAGV-----NKSAHGVRKFS 293
               K+  F   D         K+  +        K     A +     + + +  R  S
Sbjct: 278 FRTHKKYIFPILDEEVHIDPIQKKNRSEKILGQVNKDLKAIAKIQGIETHITFYTARHTS 337

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           AT     G     +    G   ++  + Y    D   L
Sbjct: 338 ATTMKRTGIATDVISEALGHADLNTTQHYLSKFDNEVL 375


>gi|253565241|ref|ZP_04842696.1| integrase [Bacteroides sp. 3_2_5]
 gi|251945520|gb|EES85927.1| integrase [Bacteroides sp. 3_2_5]
          Length = 395

 Score = 92.8 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 52/286 (18%), Positives = 100/286 (34%), Gaps = 19/286 (6%)

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK 117
           ++Y+ S  +   +    I  Y        L   S  S++S   ++++      +  +T K
Sbjct: 106 KDYMLSIGQTENSFTDYILNYLNENK-SRLRSESWWSYKSQITKLLKFRKHISFADLTEK 164

Query: 118 HIRSGVESRKHT----PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
            I        +T     ++  + L S+R     A+R   +  NP   +   K   +    
Sbjct: 165 FINEYQHYMLYTLHNNENTVSKSLRSLRTFINIAMRYGLIKTNPFKYITIKKVDGK-RDF 223

Query: 174 WTKEDMQQF------KSFWSEGSQPRLAFEFL-LYSGLRCSDSCRAGVQHLQNNIFSIKT 226
            + E++ +            E  +  L +     Y+GLR SD        ++NNI  I  
Sbjct: 224 LSAEELSKLSDAYISNKIIDEQEKEVLQYFLFSCYTGLRYSDLKMLKTSSIKNNILHINM 283

Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA 286
            KT  ++++ L    ++LL      +  +       K+         K      G+ K  
Sbjct: 284 HKTNCLVSIPLSQKALQLLPNKINSESDYVFRVYCNKVTNRVLKQVGKRY----GIPKKL 339

Query: 287 --HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
             H  R   AT+S   G     +    G  ++   + Y K  D ++
Sbjct: 340 TCHVARHTFATVSIILGIPIEVVSKLLGHSSLKTTQIYAKIVDSVK 385


>gi|150004634|ref|YP_001299378.1| transposase [Bacteroides vulgatus ATCC 8482]
 gi|149933058|gb|ABR39756.1| transposase [Bacteroides vulgatus ATCC 8482]
          Length = 407

 Score = 92.8 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 41/268 (15%), Positives = 88/268 (32%), Gaps = 29/268 (10%)

Query: 85  GSLAVNSRISFESYFDQIIR-----------KSGDFDYRKITTKHIRSGVESRKHTPSSA 133
             +A  +   +E+                    GD   + I           +K   ++A
Sbjct: 128 TDMAPATVQRYETSLKHTQDFVWETYHKKDILLGDVSRQFIEDYEF-WLKTEKKCCHNTA 186

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGS 190
            ++L + + + + A+ + ++  +P   ++               ++Q+  S         
Sbjct: 187 TKYLKNFKKIIRIALAKGWMKNDPFSEIK-FSLDKVEPDFLEDSEIQKLISKEIDIPRLG 245

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVELPDGFMKLL 245
           Q R  F F  ++GL  SD      +H+  +           QKT  +  + L +  +K+L
Sbjct: 246 QVRDVFVFCCFTGLAFSDIHDLKKEHIVEDSNGAKWIRKGRQKTKIMCNIPLMEVPLKIL 305

Query: 246 AMTPIGKETFFINNDK---QKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADA 300
                 +   +  +       +   + + + K  A   G+ K+   H  R   AT +   
Sbjct: 306 GKYSTNE---YCKSRGVLFPVLCNQKMNAYLKELADICGIKKTLTTHVARHTFATFALAN 362

Query: 301 GATAHELMATYGWKTVDQAETYTKGADR 328
           G +   +    G   V     Y +  DR
Sbjct: 363 GVSIESVAKMLGHTNVQMTRHYARVLDR 390


>gi|237717516|ref|ZP_04547997.1| phage integrase [Bacteroides sp. 2_2_4]
 gi|229453185|gb|EEO58976.1| phage integrase [Bacteroides sp. 2_2_4]
          Length = 343

 Score = 92.8 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 51/304 (16%), Positives = 103/304 (33%), Gaps = 45/304 (14%)

Query: 85  GSLAVNSRISFESYFD--------QIIRKSGDFDYRKITTKHIRSGVE----SRKHTPSS 132
            +L+ N+++S+   F          I     +     ITT  I   ++     RK + SS
Sbjct: 28  RNLSRNTQMSYRDTFRMLVSYVSTLISIAIDNLKISDITTDVITKFLDYLEIERKVSVSS 87

Query: 133 AIQFLTSMRVLFKWAV-----RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK---- 183
               L +++   K+         ++        +   K +   I    K +++       
Sbjct: 88  RNNRLAAIKAFAKFLAWKSPEHIDWCHH--VSLIPSKKTEKRMITYMDKSEIEALADAPL 145

Query: 184 ---SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITV- 235
               +    S+  +   F+  +G R S+     V+ +    +  +  +     G    + 
Sbjct: 146 KTCKYQGIRSRDHVIILFMYNTGARVSEVIGVKVKDVAMPPKRGMPMVTLHGKGRKERIC 205

Query: 236 ELPDGFMKLLAMTPIGK---ETFFINNDKQKMNATQFSIWFKAKATKAGVNK-------- 284
            L + F  LL      K   +  F+N   Q M+        K  +    +N         
Sbjct: 206 PLWEDFWDLLKPFIDNKLPNDYLFLNRYNQPMSRFCIYEMIKKYSQDVILNHPSLANKRP 265

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
           S H +R  +AT   ++GA    +    G  ++D    Y + +   +L  +  ++    V 
Sbjct: 266 SPHVIRHTTATHLLNSGADIDMVRNWMGHSSIDTTNIYAEISMERKL--EALKKCEQSV- 322

Query: 345 SDDP 348
           SD P
Sbjct: 323 SDTP 326


>gi|212640261|ref|YP_002316781.1| Site-specific recombinase XerC [Anoxybacillus flavithermus WK1]
 gi|212561741|gb|ACJ34796.1| Site-specific recombinase XerC [Anoxybacillus flavithermus WK1]
          Length = 307

 Score = 92.8 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 43/290 (14%), Positives = 88/290 (30%), Gaps = 39/290 (13%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----KHT 129
           ++ EY         + N+ IS+ +  +Q ++         +T+  IR  ++      +  
Sbjct: 4   MLHEYETYLQEKGFSPNTVISYLNDVNQFLKDLHLRPGDYVTSADIRKWIQQMLNPSEGK 63

Query: 130 P---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP---WTKEDMQQFK 183
           P   S+  + L S+R  + WAV    +  NP   ++  K   E        T+E+ +   
Sbjct: 64  PLAISTINRRLNSLRSFYAWAVEHHKIEQNPMKDIQDLKSADEDNEKIMWLTEEEFEDLL 123

Query: 184 SF-------------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
                            +  + R     L Y+GLR  +     +  L   +  I+    G
Sbjct: 124 HRMRKKPVQSRGVDPEEKYRRDRAVVYLLTYAGLRVEELSNLKLTDLDLEMKRIRIVGKG 183

Query: 231 TII-TVELPDGF-----------MKLLAMTP--IGKETFFINNDKQKMNATQFSIWFKAK 276
             + TV + +              ++    P        F +    K +        ++ 
Sbjct: 184 MKVRTVPISNILLAELEDWLKFRAEMAKKKPHVAASPYVFYSQRSPKFSVRGIQRMIESY 243

Query: 277 ATKAGVNKSAHGVRKFSATISADA-GATAHELMATYGWKTVDQAETYTKG 325
           +       + H  R         A      ++    G   +     Y K 
Sbjct: 244 SLP-NKKLTPHMFRHTFCKWMLKATNNDIEKVRRLAGHSNIATTSRYLKD 292


>gi|254437019|ref|ZP_05050513.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
 gi|198252465|gb|EDY76779.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
          Length = 368

 Score = 92.8 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 49/323 (15%), Positives = 115/323 (35%), Gaps = 22/323 (6%)

Query: 9   PFVTKERTRHGKIIYYFRK---GHGRRIRL-PYPHESTFIPAYMSALTGSTPKREYINSP 64
             +     +  K  +YF+K   G  +RI +  +P  S       +        R    + 
Sbjct: 38  KGLVLFVGKRSKT-WYFQKDVGGQTKRILIGRFPIISAQAARQTALGFALEMGRGAGKAA 96

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
           +    TL+  +  Y         +  +++   +     ++        +I+        +
Sbjct: 97  QIGAPTLEAAMEVYLARPKLR--SETNKVGMRAQLTLHLKDWMRLPLDEISKAMAVRRHQ 154

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
               +PS+A   L S R ++  A R   +   P +++E  + K +G      ED++ ++ 
Sbjct: 155 DMTGSPSAANHVLRSFRAIYNHARRTCDLPECPTMAIEWFEDKPDGRII---EDLKHWRK 211

Query: 185 FWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
              +   P  R+ +E LL++GLR ++      + +Q +   +   K G    + +     
Sbjct: 212 TIDDLPNPIHRVFYELLLFTGLRKTEVFTLRWEQIQEDRIHLPMTKNGRSFDLPISQLHH 271

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGA 302
           ++LA        +           ++     + +     +  + H  R+  AT++ +AG 
Sbjct: 272 EILAPLRHLSRDWVF-----PSPKSESGHITRPER----LKYNPHMHRRTFATVAMEAGV 322

Query: 303 TAHELMATYGWKTVDQA-ETYTK 324
               +        +    + YT+
Sbjct: 323 LEEIVGRLLNHTPLSITGQRYTR 345


>gi|118581522|ref|YP_902772.1| phage integrase family protein [Pelobacter propionicus DSM 2379]
 gi|118504232|gb|ABL00715.1| phage integrase family protein [Pelobacter propionicus DSM 2379]
          Length = 449

 Score = 92.8 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 52/324 (16%), Positives = 108/324 (33%), Gaps = 53/324 (16%)

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
           R+K  T+  L+ +Y +  H      +     +    +++   G      +T + I   +E
Sbjct: 103 RRKAPTVADLVHDYIE-RHAKRFKRSWAKDEQILNREVVPAWGKRKAADVTKRDILRLLE 161

Query: 125 S--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
               ++ P+ A      +R +F WAV Q+ +   PC  V+ P  K    R  ++ +++  
Sbjct: 162 EIVNRNAPAMANNTFQIIRKMFNWAVEQDILQHTPCTGVKLPSPKLSRDRVLSESEIKTL 221

Query: 183 ---KSFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ--KTGTIITV 235
                    G     R A   +L +  R  +        L    ++I  +  K G    V
Sbjct: 222 WENLGRPDAGMSDGVRRALRLILTTAQRPGEVTGLHTSELDGCWWTIPAERAKNGKTHRV 281

Query: 236 ELPDGFMKLL----------AMTPIGKE---TFFINNDK---QKMNATQFSIWFKAK--- 276
            L    ++++            TP  +E     F  + K   + M  T  ++        
Sbjct: 282 YLSGLALEIINQAIAQAKKSRETPYDQEYNGYVFPCHHKSKEKPMGDTALAVAVGRALAS 341

Query: 277 -------------------ATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTV 316
                                + G++  + H +R+ +AT  A  G     + A       
Sbjct: 342 PLTDDKGNPLFTAAGKPATENRLGIDHFTPHDLRRTTATFMASMGFMDEVIDAVLNHAKQ 401

Query: 317 DQAETYTKGADRIRLGIKNSRRIS 340
              + Y    ++ R  ++  + + 
Sbjct: 402 GVIKVY----NQYRYDVEKQQALE 421


>gi|241206577|ref|YP_002977673.1| site-specific tyrosine recombinase XerD [Rhizobium leguminosarum
           bv. trifolii WSM1325]
 gi|240860467|gb|ACS58134.1| tyrosine recombinase XerD [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 317

 Score = 92.8 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 44/274 (16%), Positives = 81/274 (29%), Gaps = 34/274 (12%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTK-----HIRSGVESRKHTPSSAIQFLTS 139
              A N+  S+E   D +     +   R             S +      PSS  + L +
Sbjct: 20  RGAAANTLQSYERDLDDVRSFLTERSIRLTEAASADLAAYLSSLAREGFKPSSQARRLAA 79

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEF- 198
           MR  +K+   +     +P   ++ PK+     +    E++ +  S     ++     +  
Sbjct: 80  MRQFYKFLYAEGLRTDDPTGILDAPKKGRPLPKTMGVEEVGRLLSQAEAEAEDTAPGQLQ 139

Query: 199 ----------LLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELP----DGFMK 243
                     L  +G+R S+      + L     F +   K      V L          
Sbjct: 140 RLRMLALLELLYATGMRVSELVSLPARVLDQEGRFLMIRGKGNKERLVPLSHSAISALKS 199

Query: 244 LLAMTPIGKET---------FFINNDKQKM-NATQFSIWFKAKATKAGVN---KSAHGVR 290
              +                 F +  K+       F+   K  A +AG+     S H +R
Sbjct: 200 YGRLLAAENAAVKERQESPWLFPSASKEGYLPRQVFARDLKNLAIRAGLTPSLISPHVMR 259

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              A+     GA    +    G   +   + YT 
Sbjct: 260 HAFASHLLANGADLRVVQELLGHSDISTTQIYTH 293


>gi|255103342|ref|ZP_05332319.1| integrase [Clostridium difficile QCD-63q42]
 gi|255652432|ref|ZP_05399334.1| integrase [Clostridium difficile QCD-37x79]
          Length = 370

 Score = 92.8 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 45/306 (14%), Positives = 101/306 (33%), Gaps = 38/306 (12%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKH 128
           TL   + ++ +     +++ ++  S+ +   + I    G +  +++   HI++ ++    
Sbjct: 63  TLAGFLLDFLEKYK-DNISASTYKSYIAICKNHINPSIGKYRLQELRNIHIQNYIDDLAG 121

Query: 129 T--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
              P +    +  +R+  K A R + +  N    +E P+ K      + KE M +     
Sbjct: 122 NLNPQTIKVHINVLRLAIKRAYRIKLIKENIIDGIESPRIKKFKNEIYDKEQMLKLLEVA 181

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---------------NNIFSIKTQKTGT 231
             G+   L     +  GLR S+       ++                +    +K  KT +
Sbjct: 182 K-GTNLELPISLAIGLGLRLSEVLGLTWDNIDFDENTITVNKITSRLDGSVILKEPKTES 240

Query: 232 IIT-VELPDGFMKLLA-----------MTPIGKET--FFINNDKQKMNATQFSIWFKAKA 277
            +  +  P   M LL             + +  E    F +     +     S  F+   
Sbjct: 241 SVRKIFAPIELMNLLKNYRLEQNKKLLRSIVRNEYNLLFFDRKGNPIAEDVMSKKFRKFL 300

Query: 278 TKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKN 335
               +     H +R    T+  ++      +    G   ++     Y+       +  + 
Sbjct: 301 ENNDLPHIRFHDLRHSHVTLLINSKVPIKVISERVGHSNINTTLNVYSHVL--KEMDKEA 358

Query: 336 SRRISS 341
           S RIS 
Sbjct: 359 SDRISE 364


>gi|254672660|emb|CBA06490.1| putative integrase/recombinase [Neisseria meningitidis alpha275]
          Length = 293

 Score = 92.8 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 31/249 (12%), Positives = 75/249 (30%), Gaps = 24/249 (9%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD-------YRKITTKHIRSGV 123
                  Y ++      + ++  ++    +++                + ++ +   + +
Sbjct: 6   FAAHFDAYLENIVREGKSEHTVAAYRRDLEELFALLAQMPSEDAGGVPQDLSRRDFTAAL 65

Query: 124 ES---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                R     +  + L+S R    W V +  +  +P   ++ PK+     +   +E + 
Sbjct: 66  RRLSQRGLNARTLARKLSSWRQYCVWLVERGLLHTDPTADIKPPKQPERVPKALPQEWLN 125

Query: 181 QFKSF-----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIIT 234
           +              +    FE +  SGLR S+        +  +   +     G     
Sbjct: 126 RMLDLPVDGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGKGRKQRQ 185

Query: 235 VELP----DGFMKL--LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK--AGVNKSA 286
           V L     +       L  T    +  F   +  +++  Q        A +   G + S 
Sbjct: 186 VPLTGKSVEALKNYLPLRQTASDGKALFTGRNGTRLSQRQIQKRLAQWAAQNGDGRHVSP 245

Query: 287 HGVRKFSAT 295
           H +R   A 
Sbjct: 246 HMMRHSYAR 254


>gi|302387561|ref|YP_003823383.1| integrase family protein [Clostridium saccharolyticum WM1]
 gi|302198189|gb|ADL05760.1| integrase family protein [Clostridium saccharolyticum WM1]
          Length = 285

 Score = 92.8 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 36/263 (13%), Positives = 80/263 (30%), Gaps = 23/263 (8%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           LI  +         + ++   ++     +    GD    K      +  + +R +  +S 
Sbjct: 14  LIKRFSVYLREQEKSTSTIEKYKRDLAVLCNFLGDVPITKSALIDWKEYL-TRNYAAASV 72

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI----RPWTKEDMQQFKSFWSEG 189
              L ++     +A    ++     L V+  K +        +  T+++  +        
Sbjct: 73  NTMLAAVNAFLNFA---GWID----LKVKPLKIQRNLFCREEKELTRKEYLRLVQAAERE 125

Query: 190 SQPRLAFEF--LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL-- 245
              RL+     +  +G+R S+     ++ +Q     +     G   T+ LP+   + L  
Sbjct: 126 GNQRLSLVIQSICATGIRVSELQFITMEAVQAGRADVNC--KGKTRTIFLPEKLRRALIS 183

Query: 246 --AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADA 300
                       F+    + ++ +      K     A V       H +R   A I    
Sbjct: 184 YARRQKRSFGPVFVTKTGKPLDRSNIWRDMKDLCKSADVKPEKVFPHNLRHLFARIYYTL 243

Query: 301 GATAHELMATYGWKTVDQAETYT 323
                 L    G   ++    YT
Sbjct: 244 EKDLFRLADILGHSNINTTRIYT 266


>gi|310813961|gb|ADP30788.1| IntI1 [Serratia rubidaea]
          Length = 313

 Score = 92.8 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 42/305 (13%), Positives = 93/305 (30%), Gaps = 62/305 (20%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129
           ++ + R+   +   ++ +  ++  +    IR  G      + +  + + +      RK +
Sbjct: 16  VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75

Query: 130 PSSAIQFLTSMRVLFK--WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            S+  Q L ++   +         ++       + RP+         T +++ +   F  
Sbjct: 76  VSTHRQALAALLFFYGKVLCTDLPWLQ-----EIGRPRPSRRLPVVLTPDEVVRILGFL- 129

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
           EG   RL  + L  +G+R S+  +  V+     +    ++  K      + LP+     L
Sbjct: 130 EGEH-RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSL 188

Query: 246 AMTPIGKETFFINN---------------------------------------------D 260
                    +++ +                                              
Sbjct: 189 REQLSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVR 248

Query: 261 KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           +  M    F   FK    +AG+ K  + H +R   AT    +G     +    G   V  
Sbjct: 249 RHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATAFLRSGYDIRTVQDLLGHSDVST 308

Query: 319 AETYT 323
              YT
Sbjct: 309 TMIYT 313


>gi|307578024|gb|ADN53643.1| integrase [Staphylococcus aureus]
          Length = 381

 Score = 92.8 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 42/306 (13%), Positives = 97/306 (31%), Gaps = 47/306 (15%)

Query: 84  WGSLAVNSRI--SFESYFD----QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFL 137
           W     N+    +++         I+    D   +KIT  + +  +       S      
Sbjct: 77  WLEQYQNTVRESTYQRVLTLFDTAILEHFQDVPIKKITVPYCQKVINKWNKKYSDIKAIR 136

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRK----TEGIRPWTKEDMQQFKSFWSEGSQPR 193
                +FK+AV  + +  NP    + P++K        + ++ ++++QF +F  +     
Sbjct: 137 IYTSNVFKYAVSLKIIVDNPFAHTKAPRKKEAQQDASTKYYSSDELKQFLTFVEDDPLYY 196

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-----------------GTIITVE 236
             F  L ++G R  +      + +     +I   KT                  +  T+ 
Sbjct: 197 AIFRTLAFTGFRRGELMALTWKDIDFTKQTISINKTCARGANYKLIIQEPKTKSSHRTIS 256

Query: 237 LPDGFMKLL---------------AMTPIGKETFFIN-NDKQKMNATQFSIWFKAKATKA 280
           + D    +L                 T    +  F    D + +     +        K 
Sbjct: 257 IDDKTASVLKSWRTHQRVESLKYGHNTSDKHQHVFTTVRDNKPLYPEHCNKALDLICEKN 316

Query: 281 GVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRR 338
              +   HG R    ++  +AG +  E+    G   +    + Y    ++ R   + + +
Sbjct: 317 SFKRIKVHGFRHTHCSLLFEAGLSIQEVQDRLGHGDIKTTMDIYAHVTEKQR--DQVADK 374

Query: 339 ISSVVD 344
            +  ++
Sbjct: 375 FAKYIN 380


>gi|92116456|ref|YP_576185.1| phage integrase [Nitrobacter hamburgensis X14]
 gi|91799350|gb|ABE61725.1| phage integrase [Nitrobacter hamburgensis X14]
          Length = 289

 Score = 92.8 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 42/259 (16%), Positives = 87/259 (33%), Gaps = 23/259 (8%)

Query: 85  GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMR 141
              A  ++  +          +R+S D    +   +  +  + +      +A Q ++++R
Sbjct: 20  RKFAPKTQHDYLQRVKNFAVYLRRSPDTASAE-DVRRYQLHLTASGVGVPTANQTVSTLR 78

Query: 142 VLFKWAVRQEYVAINPCLSVER---PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEF 198
             FK  + +          VER    +  ++     + E++           + + A   
Sbjct: 79  FFFKVTLGR-------ADLVERTAFVREPSKLPVVLSPEEVACLLDAVPA-LKYKAALSV 130

Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLAM---TPIGKE 253
              +GLR S+     V ++ +    I+    K      V L    ++LL         + 
Sbjct: 131 AYGAGLRVSEVVALKVGNIDSKRMIIRVEQGKGREYRYVMLSPHLLELLRAWYKAARPQG 190

Query: 254 TFFINNDK-QKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMAT 310
             F   D+ ++M   Q +    A A  A + K  S H +R   AT   +       +   
Sbjct: 191 WLFPGRDRVRQMTTRQLNRACHAAADMAEIGKPVSMHTLRHSFATHLLEQNIDIRVIQVL 250

Query: 311 YGWKTVDQAETYTKGADRI 329
            G   +D    Y + A + 
Sbjct: 251 LGHAKLDTTALYARVATKA 269


>gi|23502766|ref|NP_698893.1| site-specific tyrosine recombinase XerC [Brucella suis 1330]
 gi|62290770|ref|YP_222563.1| site-specific tyrosine recombinase XerC [Brucella abortus bv. 1
           str. 9-941]
 gi|82700682|ref|YP_415256.1| site-specific tyrosine recombinase XerC [Brucella melitensis biovar
           Abortus 2308]
 gi|161619834|ref|YP_001593721.1| site-specific tyrosine recombinase XerC [Brucella canis ATCC 23365]
 gi|189024985|ref|YP_001935753.1| Phage integrase [Brucella abortus S19]
 gi|225853354|ref|YP_002733587.1| site-specific tyrosine recombinase XerC [Brucella melitensis ATCC
           23457]
 gi|254690060|ref|ZP_05153314.1| site-specific tyrosine recombinase XerC [Brucella abortus bv. 6
           str. 870]
 gi|254694548|ref|ZP_05156376.1| site-specific tyrosine recombinase XerC [Brucella abortus bv. 3
           str. Tulya]
 gi|254696173|ref|ZP_05158001.1| site-specific tyrosine recombinase XerC [Brucella abortus bv. 2
           str. 86/8/59]
 gi|254700560|ref|ZP_05162388.1| site-specific tyrosine recombinase XerC [Brucella suis bv. 5 str.
           513]
 gi|254704930|ref|ZP_05166758.1| site-specific tyrosine recombinase XerC [Brucella suis bv. 3 str.
           686]
 gi|254707556|ref|ZP_05169384.1| site-specific tyrosine recombinase XerC [Brucella pinnipedialis
           M163/99/10]
 gi|254708907|ref|ZP_05170718.1| site-specific tyrosine recombinase XerC [Brucella pinnipedialis
           B2/94]
 gi|254715980|ref|ZP_05177791.1| site-specific tyrosine recombinase XerC [Brucella ceti M13/05/1]
 gi|254731091|ref|ZP_05189669.1| site-specific tyrosine recombinase XerC [Brucella abortus bv. 4
           str. 292]
 gi|256030433|ref|ZP_05444047.1| site-specific tyrosine recombinase XerC [Brucella pinnipedialis
           M292/94/1]
 gi|256112250|ref|ZP_05453171.1| site-specific tyrosine recombinase XerC [Brucella melitensis bv. 3
           str. Ether]
 gi|256158417|ref|ZP_05456315.1| site-specific tyrosine recombinase XerC [Brucella ceti M490/95/1]
 gi|256253837|ref|ZP_05459373.1| site-specific tyrosine recombinase XerC [Brucella ceti B1/94]
 gi|256258313|ref|ZP_05463849.1| site-specific tyrosine recombinase XerC [Brucella abortus bv. 9
           str. C68]
 gi|256263161|ref|ZP_05465693.1| tyrosine recombinase xerC [Brucella melitensis bv. 2 str. 63/9]
 gi|256370318|ref|YP_003107829.1| tyrosine recombinase [Brucella microti CCM 4915]
 gi|260169343|ref|ZP_05756154.1| site-specific tyrosine recombinase XerC [Brucella sp. F5/99]
 gi|260546037|ref|ZP_05821777.1| tyrosine recombinase xerC [Brucella abortus NCTC 8038]
 gi|260567595|ref|ZP_05838065.1| tyrosine recombinase xerC [Brucella suis bv. 4 str. 40]
 gi|260755595|ref|ZP_05867943.1| tyrosine recombinase xerC [Brucella abortus bv. 6 str. 870]
 gi|260758821|ref|ZP_05871169.1| tyrosine recombinase xerC [Brucella abortus bv. 4 str. 292]
 gi|260760545|ref|ZP_05872888.1| tyrosine recombinase xerC [Brucella abortus bv. 2 str. 86/8/59]
 gi|260884621|ref|ZP_05896235.1| tyrosine recombinase xerC [Brucella abortus bv. 9 str. C68]
 gi|261214868|ref|ZP_05929149.1| tyrosine recombinase xerC [Brucella abortus bv. 3 str. Tulya]
 gi|261217745|ref|ZP_05932026.1| tyrosine recombinase xerC [Brucella ceti M13/05/1]
 gi|261220972|ref|ZP_05935253.1| tyrosine recombinase xerC [Brucella ceti B1/94]
 gi|261315040|ref|ZP_05954237.1| tyrosine recombinase xerC [Brucella pinnipedialis M163/99/10]
 gi|261316403|ref|ZP_05955600.1| tyrosine recombinase xerC [Brucella pinnipedialis B2/94]
 gi|261751064|ref|ZP_05994773.1| tyrosine recombinase xerC [Brucella suis bv. 5 str. 513]
 gi|261755626|ref|ZP_05999335.1| tyrosine recombinase xerC [Brucella suis bv. 3 str. 686]
 gi|261758859|ref|ZP_06002568.1| tyrosine recombinase xerC [Brucella sp. F5/99]
 gi|265987475|ref|ZP_06100032.1| tyrosine recombinase xerC [Brucella pinnipedialis M292/94/1]
 gi|265993679|ref|ZP_06106236.1| tyrosine recombinase xerC [Brucella melitensis bv. 3 str. Ether]
 gi|265996931|ref|ZP_06109488.1| tyrosine recombinase xerC [Brucella ceti M490/95/1]
 gi|294851157|ref|ZP_06791830.1| tyrosine recombinase XerC [Brucella sp. NVSL 07-0026]
 gi|297247158|ref|ZP_06930876.1| tyrosine recombinase XerC [Brucella abortus bv. 5 str. B3196]
 gi|306843367|ref|ZP_07475968.1| tyrosine recombinase XerC [Brucella sp. BO1]
 gi|34222806|sp|Q7ZAN7|XERC_BRUSU RecName: Full=Tyrosine recombinase xerC
 gi|23348785|gb|AAN30808.1| integrase/recombinase XerC [Brucella suis 1330]
 gi|62196902|gb|AAX75202.1| XerC, integrase/recombinase [Brucella abortus bv. 1 str. 9-941]
 gi|82616783|emb|CAJ11872.1| Phage integrase:Phage integrase, N-terminal SAM-like [Brucella
           melitensis biovar Abortus 2308]
 gi|161336645|gb|ABX62950.1| tyrosine recombinase XerC [Brucella canis ATCC 23365]
 gi|189020557|gb|ACD73279.1| Phage integrase [Brucella abortus S19]
 gi|225641719|gb|ACO01633.1| tyrosine recombinase XerC [Brucella melitensis ATCC 23457]
 gi|256000481|gb|ACU48880.1| tyrosine recombinase [Brucella microti CCM 4915]
 gi|260096144|gb|EEW80020.1| tyrosine recombinase xerC [Brucella abortus NCTC 8038]
 gi|260157113|gb|EEW92193.1| tyrosine recombinase xerC [Brucella suis bv. 4 str. 40]
 gi|260669139|gb|EEX56079.1| tyrosine recombinase xerC [Brucella abortus bv. 4 str. 292]
 gi|260670977|gb|EEX57798.1| tyrosine recombinase xerC [Brucella abortus bv. 2 str. 86/8/59]
 gi|260675703|gb|EEX62524.1| tyrosine recombinase xerC [Brucella abortus bv. 6 str. 870]
 gi|260874149|gb|EEX81218.1| tyrosine recombinase xerC [Brucella abortus bv. 9 str. C68]
 gi|260916475|gb|EEX83336.1| tyrosine recombinase xerC [Brucella abortus bv. 3 str. Tulya]
 gi|260919556|gb|EEX86209.1| tyrosine recombinase xerC [Brucella ceti B1/94]
 gi|260922834|gb|EEX89402.1| tyrosine recombinase xerC [Brucella ceti M13/05/1]
 gi|261295626|gb|EEX99122.1| tyrosine recombinase xerC [Brucella pinnipedialis B2/94]
 gi|261304066|gb|EEY07563.1| tyrosine recombinase xerC [Brucella pinnipedialis M163/99/10]
 gi|261738843|gb|EEY26839.1| tyrosine recombinase xerC [Brucella sp. F5/99]
 gi|261740817|gb|EEY28743.1| tyrosine recombinase xerC [Brucella suis bv. 5 str. 513]
 gi|261745379|gb|EEY33305.1| tyrosine recombinase xerC [Brucella suis bv. 3 str. 686]
 gi|262551399|gb|EEZ07389.1| tyrosine recombinase xerC [Brucella ceti M490/95/1]
 gi|262764660|gb|EEZ10581.1| tyrosine recombinase xerC [Brucella melitensis bv. 3 str. Ether]
 gi|263093066|gb|EEZ17216.1| tyrosine recombinase xerC [Brucella melitensis bv. 2 str. 63/9]
 gi|264659672|gb|EEZ29933.1| tyrosine recombinase xerC [Brucella pinnipedialis M292/94/1]
 gi|294819746|gb|EFG36745.1| tyrosine recombinase XerC [Brucella sp. NVSL 07-0026]
 gi|297174327|gb|EFH33674.1| tyrosine recombinase XerC [Brucella abortus bv. 5 str. B3196]
 gi|306276058|gb|EFM57758.1| tyrosine recombinase XerC [Brucella sp. BO1]
 gi|326409918|gb|ADZ66983.1| Phage integrase [Brucella melitensis M28]
 gi|326539631|gb|ADZ87846.1| tyrosine recombinase XerC [Brucella melitensis M5-90]
          Length = 315

 Score = 92.8 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 49/291 (16%), Positives = 92/291 (31%), Gaps = 31/291 (10%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFES----YFDQIIRKSGDFD----YRKITTKHIRS 121
           L     E+ KS      L+ N+ I++E     +   +    G+         +    +RS
Sbjct: 15  LAAAREEWLKSLKTMRRLSDNTLIAYERDTRQFLQFLTGHLGEPPSLKEIGNLRIADLRS 74

Query: 122 GVESRKHTPSSAIQF---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
            + +R++  + A      L  +R L +   ++  V      ++  P++     +P T +D
Sbjct: 75  FLANRRNDGAGARTLGRGLAGVRSLLRHLEKRGLVNAAGASAMRAPRQPKSLPKPLTADD 134

Query: 179 MQ-------QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKT 229
            +       Q        ++       L   GLR S++       L +        T K 
Sbjct: 135 ARRVVSADGQMAEEPWIAARNAAVLTLLYGCGLRISEALGLSGDALSDPSARSMTITGKG 194

Query: 230 GTIITVELPDGFMKLLAMTPI-------GKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
                V L     K +A             +  F       ++A       +      G+
Sbjct: 195 SKTRLVPLLPAVHKAVAQYRALCPFDLSAGQPLFRGAKGGPLHAAIIQREMQKLRAGLGL 254

Query: 283 N--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
               + H +R   AT     G     +    G  ++   + YT G D  RL
Sbjct: 255 PDSATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQVYT-GVDTQRL 304


>gi|170293912|gb|ACB13045.1| IntI1 [Thauera sp. B4]
          Length = 337

 Score = 92.8 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 42/306 (13%), Positives = 93/306 (30%), Gaps = 62/306 (20%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129
           ++ + R+   +   ++ +  ++  +    IR  G      + +  + + +      RK +
Sbjct: 16  VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75

Query: 130 PSSAIQFLTSMRVLFK--WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            S+  Q L ++   +         ++       + RP+         T +++ +   F  
Sbjct: 76  VSTHRQALAALLFFYGKVLCTDLPWLQ-----EIGRPRPSRRLPVVLTPDEVVRTLGFL- 129

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQH--LQNNIFSIKTQKTGTIITVELPDGFMKLL 245
           EG   RL  + L  +G+R S+  +  V+     +    ++  K      + LP+     L
Sbjct: 130 EGEH-RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSL 188

Query: 246 AMTPIGKETFFINN---------------------------------------------D 260
                    +++ +                                              
Sbjct: 189 REQLSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVR 248

Query: 261 KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           +  M    F   FK    +AG+ K  + H +R   AT    +G     +    G   V  
Sbjct: 249 RHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVST 308

Query: 319 AETYTK 324
              YT 
Sbjct: 309 TMIYTH 314


>gi|27383511|ref|NP_775042.1| class I integron integrase [Citrobacter freundii]
 gi|32455549|ref|NP_862305.1| DNA integrase IntI1 [Corynebacterium glutamicum]
 gi|133756208|ref|YP_001096358.1| hypothetical protein pLEW517_p33 [Escherichia coli]
 gi|169797581|ref|YP_001715374.1| integrase/recombinase (E2 protein) [Acinetobacter baumannii AYE]
 gi|200388793|ref|ZP_03215405.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|226807703|ref|YP_002791398.1| IntI1 [Enterobacter cloacae]
 gi|226810014|ref|YP_002791708.1| IntI1 [Enterobacter cloacae]
 gi|297622202|ref|YP_003675754.1| IntIA [Klebsiella oxytoca KOX105]
 gi|301028321|ref|ZP_07191578.1| integron integrase [Escherichia coli MS 196-1]
 gi|317050213|ref|YP_004111329.1| integron integrase [Desulfurispirillum indicum S5]
 gi|5107035|gb|AAD39931.1|AF133699_1 integron In50 integrase [Pseudomonas aeruginosa]
 gi|9836716|gb|AAG00280.1|AF164956_12 DNA integrase IntI1 [Corynebacterium glutamicum]
 gi|10185692|gb|AAG14404.1|AF188331_3 putative integrase [Shigella flexneri]
 gi|12719023|gb|AAK02045.1|AF261825_14 integrase [Salmonella enterica subsp. enterica serovar Typhimurium]
 gi|2385351|emb|CAA75043.1| int [Corynebacterium glutamicum]
 gi|3661459|gb|AAC64362.1| class I integrase [Pseudomonas aeruginosa]
 gi|4063851|gb|AAC98492.1| integrase [Salmonella typhimurium DT104]
 gi|5420398|emb|CAB46685.1| DNA integrase [Pseudomonas aeruginosa]
 gi|17383996|emb|CAC81318.1| IntI1 DNA integrase [Salmonella typhimurium]
 gi|17384003|emb|CAC81325.1| IntI1 DNA integrase [Salmonella typhimurium]
 gi|27261364|gb|AAN87705.1| class I integron integrase [Citrobacter freundii]
 gi|34556054|emb|CAE46709.1| DNA integrase [Pseudomonas aeruginosa]
 gi|34556062|emb|CAE46716.1| DNA integrase [Pseudomonas aeruginosa]
 gi|57208125|emb|CAI40605.1| class 1 integrase [Corynebacterium amycolatum]
 gi|66277417|gb|AAY44597.1| class 1 integron integrase [Enterobacter cloacae]
 gi|82653445|emb|CAG23925.2| type I integrase [Pseudomonas aeruginosa]
 gi|83627316|dbj|BAE54317.1| integrase [Escherichia coli]
 gi|85376217|gb|ABC70304.1| IntI1 [Pseudomonas aeruginosa]
 gi|85376219|gb|ABC70305.1| IntI1 [Pseudomonas aeruginosa]
 gi|90265346|emb|CAJ77028.1| Integrase [Acinetobacter baumannii]
 gi|110084043|gb|ABG49197.1| hypothetical protein [Escherichia coli]
 gi|118402688|emb|CAI94346.1| type I integrase [Pseudomonas aeruginosa]
 gi|118402758|emb|CAI43354.1| integrase/recombinase [Pseudomonas aeruginosa]
 gi|122891987|gb|ABM67075.1| IntI1 integrase [Aeromonas caviae]
 gi|148455793|gb|ABQ65133.1| IntI1 [Pseudomonas putida]
 gi|151564272|gb|ABS17587.1| integrase [Klebsiella pneumoniae]
 gi|166865480|gb|ABZ01842.1| IntI1 [Salmonella enterica subsp. enterica]
 gi|169150508|emb|CAM88414.1| Integrase/recombinase (E2 protein) [Acinetobacter baumannii AYE]
 gi|187369485|dbj|BAG31351.1| class 1 integrase IntI1 [Salmonella enterica subsp. enterica
           serovar Typhimurium]
 gi|193783422|emb|CAE81269.2| IntI1 [Klebsiella pneumoniae]
 gi|199605891|gb|EDZ04436.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|226425929|gb|ACO54022.1| IntI1 [Enterobacter cloacae]
 gi|226426240|gb|ACO54332.1| IntI1 [Enterobacter cloacae]
 gi|253558898|gb|ACT32121.1| IntI1 [Pseudomonas putida]
 gi|255039694|gb|ACT99624.1| IntI1 [Pseudomonas aeruginosa]
 gi|265509433|gb|ACY75520.1| integrase [Pseudomonas aeruginosa]
 gi|265509448|gb|ACY75535.1| integrase [Pseudomonas aeruginosa]
 gi|296492021|gb|ADH29523.1| IntI1 [Klebsiella oxytoca KOX105]
 gi|297593574|gb|ADI47529.1| IntI1 integrase [Klebsiella pneumoniae]
 gi|298104544|gb|ADI55012.1| class I integron integrase [Aeromonas caviae]
 gi|299878615|gb|EFI86826.1| integron integrase [Escherichia coli MS 196-1]
 gi|312914891|dbj|BAJ38865.1| IntI1 [Salmonella enterica subsp. enterica serovar Typhimurium str.
           T000240]
 gi|312915760|dbj|BAJ39733.1| IntI1 [Salmonella enterica subsp. enterica serovar Typhimurium str.
           T000240]
 gi|316945297|gb|ADU64773.1| integron integrase [Desulfurispirillum indicum S5]
 gi|321159227|gb|ADW66520.1| DNA integrase [Enterobacter aerogenes]
 gi|321268198|gb|ADW78905.1| IntI [Escherichia coli]
 gi|332144420|dbj|BAK19640.1| class 1 integrase [Salmonella enterica subsp. enterica serovar
           Typhimurium]
 gi|332144565|dbj|BAK19780.1| class 1 integrase [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 337

 Score = 92.8 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 42/306 (13%), Positives = 93/306 (30%), Gaps = 62/306 (20%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129
           ++ + R+   +   ++ +  ++  +    IR  G      + +  + + +      RK +
Sbjct: 16  VLDQLRERIRYLHYSLPTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75

Query: 130 PSSAIQFLTSMRVLFK--WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            S+  Q L ++   +         ++       + RP+         T +++ +   F  
Sbjct: 76  VSTHRQALAALLFFYGKVLCTDLPWLQ-----EIGRPRPSRRLPVVLTPDEVVRILGFL- 129

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQH--LQNNIFSIKTQKTGTIITVELPDGFMKLL 245
           EG   RL  + L  +G+R S+  +  V+     +    ++  K      + LP+     L
Sbjct: 130 EGEH-RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSL 188

Query: 246 AMTPIGKETFFINN---------------------------------------------D 260
                    +++ +                                              
Sbjct: 189 REQLSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVR 248

Query: 261 KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           +  M    F   FK    +AG+ K  + H +R   AT    +G     +    G   V  
Sbjct: 249 RHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVST 308

Query: 319 AETYTK 324
              YT 
Sbjct: 309 TMIYTH 314


>gi|325686005|gb|EGD28066.1| site-specific tyrosine recombinase XerC [Lactobacillus delbrueckii
           subsp. lactis DSM 20072]
          Length = 247

 Score = 92.8 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 40/241 (16%), Positives = 82/241 (34%), Gaps = 35/241 (14%)

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR--KTEGIRPWTKEDMQQFKSFW-SEGS 190
            + +     + K+A +   +  NP   V  PK+  K +    +TK++++ F +     G 
Sbjct: 4   DRMIVWTSKVLKYAFKVGLIDSNPFDRVIVPKKPAKRKKDNFYTKDELETFLNGARDVGM 63

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-----------GTI------- 232
                F  L +SG+R  +        +     S+   KT           G+        
Sbjct: 64  MKYTLFRLLAFSGMRIGELIALEWSDVDFASQSVSINKTLTLDKYGQATVGSPKTTNSNR 123

Query: 233 ------ITVELP-----DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281
                 +T+ +      +   +++          F +     ++      W K  A   G
Sbjct: 124 AVLLDDVTMTILRQWRAEHARRIIYFGKPRNNLVFASEHGGHLSNGTIKGWNKKIAENKG 183

Query: 282 VNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGA-DRIRLGIKNSRR 338
           +   S HG R   A++  +AG T  ++    G  ++    + YT    DR    ++   +
Sbjct: 184 LRAISLHGFRHTHASLCFEAGLTMQDVKERLGHSSISTTVDIYTHVTNDRKEESVQQLAK 243

Query: 339 I 339
            
Sbjct: 244 F 244


>gi|258543088|ref|YP_003188521.1| phage DNA recombinase [Acetobacter pasteurianus IFO 3283-01]
 gi|256634166|dbj|BAI00142.1| phage DNA recombinase [Acetobacter pasteurianus IFO 3283-01]
 gi|256637226|dbj|BAI03195.1| phage DNA recombinase [Acetobacter pasteurianus IFO 3283-03]
 gi|256640278|dbj|BAI06240.1| phage DNA recombinase [Acetobacter pasteurianus IFO 3283-07]
 gi|256643335|dbj|BAI09290.1| phage DNA recombinase [Acetobacter pasteurianus IFO 3283-22]
 gi|256646390|dbj|BAI12338.1| phage DNA recombinase [Acetobacter pasteurianus IFO 3283-26]
 gi|256649443|dbj|BAI15384.1| phage DNA recombinase [Acetobacter pasteurianus IFO 3283-32]
 gi|256652429|dbj|BAI18363.1| phage DNA recombinase [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256655487|dbj|BAI21414.1| phage DNA recombinase [Acetobacter pasteurianus IFO 3283-12]
          Length = 291

 Score = 92.8 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 35/251 (13%), Positives = 88/251 (35%), Gaps = 12/251 (4%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF-LTSMRVL 143
            + + N+  ++ +   +  R         +    I++  +S      S  +  +++++ L
Sbjct: 32  HNRSSNTVRAYRTNVAEFARFVA-KPMADVALADIQAWNDSMADAADSTRRRKISAVKSL 90

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGI-RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202
             +  +  ++  +   +    + +     R  +++ +    +   +  +       L  +
Sbjct: 91  LTYGHKLGFLPQDAGAAFRMERGRDNLNERILSRQQVLAMLAGEKDP-RRHALLALLYGT 149

Query: 203 GLRCSDSCRAGVQHLQN---NIFSIKTQKTGTIITVELPDGFMKLLAMTPIG---KETFF 256
           GLR S++C    + +        +    K G    V++     K +A             
Sbjct: 150 GLRISEACALRWRDMTRRQSGGIATVFGKGGKTRHVQVSPSLWKEIAAVRSDVGPDAPVI 209

Query: 257 INNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWK 314
             +D   ++        K  A +AG+  + SAH +R   A+   DAG   H + A  G  
Sbjct: 210 PGHDGGLLHERAVDRVVKRAAKRAGLPPDVSAHWLRHAFASHQLDAGQPVHWVQAQLGHS 269

Query: 315 TVDQAETYTKG 325
           ++     Y+  
Sbjct: 270 SLATTTRYSHA 280


>gi|295697302|ref|YP_003590540.1| integrase family protein [Bacillus tusciae DSM 2912]
 gi|295412904|gb|ADG07396.1| integrase family protein [Bacillus tusciae DSM 2912]
          Length = 413

 Score = 92.8 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 46/329 (13%), Positives = 92/329 (27%), Gaps = 33/329 (10%)

Query: 35  LPYPHESTFIP--AYMSALT-----GSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87
           LP P    F P   ++++LT     G+  +R   N P + P      +  +         
Sbjct: 70  LPQPIPKKFRPPVRFLASLTDVQLHGTVVRRRPKNRPYEAPPAFGKALDAFTVECQRRGY 129

Query: 88  AV---NSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLF 144
           +     +R+     F   +                R       + P + +  LT++R   
Sbjct: 130 SPYGQRTRMGRIRLFLAFLASENVTPDTLTARHVSRYVTTLMNYNPKTVLAILTNLRTFL 189

Query: 145 KWAVRQEYVAINPCLSVERPKRKT--EGIRPWTKEDMQQFKSFW----SEGSQPRLAFEF 198
           ++     + A +   +V R +          W  + +Q+  +        G +       
Sbjct: 190 RFLHDAGFHAQDLSGAVPRVRAGRYERLPSVWPADTVQRLLNAVDRGNPTGKRDYAILLL 249

Query: 199 LLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLL-----AMTPIG 251
               G+R  D     +   H ++   +   QKTG  I   L D     +        P  
Sbjct: 250 AARLGMRVGDIKALTLSALHWESKTITWVQQKTGRAIEYPLLDDVGWAIIDYLKYGRPAT 309

Query: 252 KETFFINNDKQKM----NATQFSIWFKAKATKAGV-----NKSAHGVRKFSATISADAGA 302
                            +             +AG+     +   H +R   A+   +   
Sbjct: 310 TSPVLFVRHYAPFEPFGSHANLHHIITRYVRRAGISVPAGHHGMHALRHTLASTLLERET 369

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRL 331
               +    G  +    + Y    +R  L
Sbjct: 370 PLPVIAEILGHLSTQSTQVYL-AVNREGL 397


>gi|163843939|ref|YP_001628343.1| site-specific tyrosine recombinase XerC [Brucella suis ATCC 23445]
 gi|163674662|gb|ABY38773.1| tyrosine recombinase XerC [Brucella suis ATCC 23445]
          Length = 315

 Score = 92.8 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 49/291 (16%), Positives = 93/291 (31%), Gaps = 31/291 (10%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFES----YFDQIIRKSGDFD----YRKITTKHIRS 121
           L     E+ KS      L+ N+ I++E     +   +    G+         +    +RS
Sbjct: 15  LAAAREEWLKSLKTMRRLSDNTLIAYERDTRQFLQFLTGHLGEPPSLKEIGNLRIADLRS 74

Query: 122 GVESRKHTPSSAIQF---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
            + +R++  + A      L  +R L +   ++  V      ++  P++     +P T +D
Sbjct: 75  FLANRRNDGAGARTLGRGLAGVRSLLRHLEKRGLVNAAGASAMRAPRQPKSLPKPLTADD 134

Query: 179 MQQFKSFWS-------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKT 229
            ++  S            ++       L   GLR S++       L +        T K 
Sbjct: 135 ARRLVSADGQMAEEPWIAARNAAVLTLLYGCGLRISEALGLSGDALSDPSARSMTITGKG 194

Query: 230 GTIITVELPDGFMKLLAMTPI-------GKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
                V L     K +A             +  F       ++A       +      G+
Sbjct: 195 SKTRLVPLLPAVHKAVAQYRALCPFDLSAGQPLFRGAKGGPLHAAIIQREMQKLRAGLGL 254

Query: 283 N--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
               + H +R   AT     G     +    G  ++   + YT G D  RL
Sbjct: 255 PDSATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQVYT-GVDTQRL 304


>gi|315497300|ref|YP_004086104.1| integrase family protein [Asticcacaulis excentricus CB 48]
 gi|315415312|gb|ADU11953.1| integrase family protein [Asticcacaulis excentricus CB 48]
          Length = 304

 Score = 92.8 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 48/292 (16%), Positives = 98/292 (33%), Gaps = 37/292 (12%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFES----YFDQIIRKSGDF----DYRKITTKHIRSG 122
           L+WL  +Y K+     ++  +  ++      Y   + +  G      D   +T+  IR  
Sbjct: 8   LQWL--QYLKAQ--KRVSPRTLEAYGHAFSLYIGHLRKALGADIDLNDLSHLTSADIRGW 63

Query: 123 VE--SRKHTPSSAI---QFLTSMRVLFKWA-VRQEYVAINPCLSVERPKRKTEGIRPWTK 176
           +     K  P SA    Q L++++    +  +   Y      +  + P+ KT   RP  +
Sbjct: 64  MAYLRGKDEPLSARSLAQHLSAIKSFHSYLDLHMGYANAQ-VVLTQGPRLKTSLPRPLNE 122

Query: 177 EDMQQFKSFWS--------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
           +  Q   +           E ++ R     L   GLR S++     +            K
Sbjct: 123 DQAQGLLTEIELDGDKSEWEAARDRAVLLLLYGCGLRISEALSLTAKDTPLAETLRIVGK 182

Query: 229 TGTIITVELPDGFMKLLAM-------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281
                 V + +   + +         T   ++  F       ++     +  +   ++ G
Sbjct: 183 GNKTRLVPVLEAVREAVDTYRRLQPFTLTEEDALFRAPRGGPLSPRHVQLSVQHLRSRLG 242

Query: 282 V--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           +    + H +R   AT    +GA    +    G  ++   + YT   D  RL
Sbjct: 243 LSDRATPHALRHSFATHLLGSGADLRSIQELLGHASLSTTQKYT-QVDAERL 293


>gi|229008693|ref|ZP_04166093.1| Phage integrase [Bacillus mycoides Rock1-4]
 gi|228752546|gb|EEM02174.1| Phage integrase [Bacillus mycoides Rock1-4]
          Length = 381

 Score = 92.8 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 53/366 (14%), Positives = 121/366 (33%), Gaps = 59/366 (16%)

Query: 17  RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK--------- 67
           R    ++ FR      +R   P+   +              +       KK         
Sbjct: 5   RKFGDVWEFR------VRFKDPYTQKYKEKSKRGFKTKKEAQLAAAEEEKKLLNGLEVEI 58

Query: 68  -PTTLKWLISEYRKSAHWGSLAVNS----RISFESYFDQIIRKSGDFDYRKITTKHIRSG 122
            PT+LK  + ++ K     +++ N+      + E +     +     + + +  +   + 
Sbjct: 59  TPTSLKHYLRDWLKLFKQDNVSKNTYILHERNIEKHLIPYFQNINLKELKPMMYQKFINS 118

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV---ERPKRKTEGIRPWTKEDM 179
           +  + ++  +      +M    K AV  + +  NPC  V    R  ++ +G++    ED+
Sbjct: 119 LTDQGYSKRTVQIIHGTMNNAMKKAVSLKKIESNPCEEVVISNRNNKERDGLKYMRSEDI 178

Query: 180 QQFKSFWSEGSQPRLAF-EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT--------- 229
             F     + +     F + LL +G+R  ++     + +     +I   KT         
Sbjct: 179 PLFLKASYQYNYIYYIFFKVLLNTGMRKGEAAALQWKDINLKEHTITISKTLDFTAKTKE 238

Query: 230 ---------GTIITVELPDGFMKLLAMTPI---------------GKETFFINNDKQKMN 265
                     +  T+ +P      L                      +  F   D + + 
Sbjct: 239 ELFGDTKTFTSKRTIMIPKNLADELLAHKKWQNANKLVLQDAYEHELDLVFSRVDGKFLP 298

Query: 266 ATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYT 323
            +     F     KA + +   H +R   A +  ++GA+   +    G K+++  +  Y+
Sbjct: 299 KSTLFNAFSRILKKANLPRLEIHSLRHTHAVLLLESGASMKFIQDRLGHKSIEITSNVYS 358

Query: 324 KGADRI 329
             +D+I
Sbjct: 359 HISDKI 364


>gi|88802458|ref|ZP_01117985.1| putative site-specific recombinase [Polaribacter irgensii 23-P]
 gi|88781316|gb|EAR12494.1| putative site-specific recombinase [Polaribacter irgensii 23-P]
          Length = 301

 Score = 92.8 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 39/263 (14%), Positives = 85/263 (32%), Gaps = 24/263 (9%)

Query: 85  GSLAVNSRISFESYFDQIIR----KSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFL 137
              + ++ I++                      +    +R  + S      + S+  + +
Sbjct: 19  KGYSKHTIIAYRKDLIDFSSFCALHFDQESITVVAYAQVRRWIVSLVAADISNSTINRKV 78

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG-----SQP 192
           +S++  +K+  +   +  NP    +  K       P+T +++       + G      + 
Sbjct: 79  SSLKSFYKFLQKSSQIENNPLSKHKSLKVAKRVQVPFTAKEINAVLENMAGGQNFEACRN 138

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELP-------DGFMK 243
           RL  E L  +G+R ++        +   +    +   K      V +          +  
Sbjct: 139 RLLVELLYSTGMRRAELISIQEVDVNCADQTIKV-VGKRNKERYVPILSSVLQTIKEYQG 197

Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSAHGVRKFSATISADAG 301
           L A    G   F I +   K+  T       +      + V KS H +R   AT   + G
Sbjct: 198 LKATIDGGSGFFLITSKGNKLYETLVYRIINSYFSKISSKVKKSPHILRHSFATHLLNEG 257

Query: 302 ATAHELMATYGWKTVDQAETYTK 324
           A  + +    G  ++   + YT 
Sbjct: 258 ADLNSVKELLGHSSLASTQVYTH 280


>gi|75675027|ref|YP_317448.1| Phage integrase [Nitrobacter winogradskyi Nb-255]
 gi|74419897|gb|ABA04096.1| Phage integrase [Nitrobacter winogradskyi Nb-255]
          Length = 400

 Score = 92.8 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 47/280 (16%), Positives = 87/280 (31%), Gaps = 27/280 (9%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRSGV------ 123
           ++ LI  Y +  H   LA  +R    S   +++    G     +I    +   +      
Sbjct: 98  VRQLIDRYLEE-HASKLAKRNRDDQASMLRKLVEPAWGPRKAAEIQPDDVDRLLCQIAGG 156

Query: 124 ----ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
                 RK TP  A +    +R +F  A+R      NP     R   +    R  + +++
Sbjct: 157 TLGKRGRKPTPVRANRVGEILRKMFNLAIRWRIRTDNPAAGFAR-NAEAPRDRYLSTDEI 215

Query: 180 QQFKSFWSEGSQPRLA--FEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVE 236
            +  +        R A     +L +G R  +   A       +    IK   T     + 
Sbjct: 216 GRLSAALDAHPNRRAADAVRLILLTGARRGEVLGARWDQFDLDAAVWIKPAATTKQRRLH 275

Query: 237 LPD-------GFMKLLAMTPIGKETFFI-NNDKQKMNATQFSIWFKAKATKAGVNK-SAH 287
                         +    P   E  F  + + + +       +++   TKA +     H
Sbjct: 276 RAPISASAAALLRTIRLRVPKDCEWVFPGDAEGKPL--QDIKRFWEDVRTKAELPAVRTH 333

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
            +R   A++    G T   +    G   V   + Y    D
Sbjct: 334 DLRHTFASLLVSGGMTLPMIGKLLGHTQVQTTQRYAHLLD 373


>gi|257438451|ref|ZP_05614206.1| putative tyrosine recombinase XerC [Faecalibacterium prausnitzii
           A2-165]
 gi|257199030|gb|EEU97314.1| putative tyrosine recombinase XerC [Faecalibacterium prausnitzii
           A2-165]
          Length = 230

 Score = 92.8 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 36/228 (15%), Positives = 78/228 (34%), Gaps = 23/228 (10%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVESRK 127
           LK L  E+        LA  S  ++ +    ++         ++      HIR  ++ ++
Sbjct: 3   LKDLRDEFLYDCECRHLAKGSLRNYRAATRFLVDFLELRRITELEEVKPHHIRDLMKEKQ 62

Query: 128 H---TPSSAIQFLTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPWTKEDMQQF 182
               TP      L   R  F + V + Y+    NP   V+  ++    I  +T ++M++ 
Sbjct: 63  DMGSTPRYINDLLKVWRTWFNYLVTEGYLDERDNPAKKVKPLRQPKTIIDTFTVDEMRRM 122

Query: 183 KSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
             F+        + +     L  +G+RC++      + ++ +   +K  K      V   
Sbjct: 123 IRFYDGTDFLSVRNKTIIMLLFDTGMRCNEMILMEPEDIKPDYILVKHGKGSKERVVPKS 182

Query: 239 DGFMK-----------LLAMTPIGKETFFINNDKQKMNATQFSIWFKA 275
               K            L   P   +  F++ + + +     +   K 
Sbjct: 183 PALSKQLMKYRTLRDAYLKEYPSRHKNLFLSKNGKPLTDEAVARMLKH 230


>gi|218682269|ref|ZP_03529870.1| site-specific tyrosine recombinase XerC [Rhizobium etli CIAT 894]
          Length = 248

 Score = 92.8 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 42/238 (17%), Positives = 74/238 (31%), Gaps = 21/238 (8%)

Query: 114 ITTKHIRSGVESRKHTPSSAIQF---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170
           +     R+ + +R+   S A      L  +R L +   ++  V      ++  PK+    
Sbjct: 1   MRPADFRAFLAARRKQGSGARSLGRNLAGLRSLLRHLEKKGLVNAAGAGAIRSPKQPKSL 60

Query: 171 IRPWTKEDM-------QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223
            +P +            Q        ++       L   GLR S++       LQ    +
Sbjct: 61  PKPLSDTQAITVVSNEAQLHDEPWIAARDAAVMTLLYGCGLRISEALDLVPADLQKGATT 120

Query: 224 IK-TQKTGTIITVELP----DGFMKLLAMTPIG---KETFFINNDKQKMNATQFSIWFKA 275
           ++ T K      V L     D   K   + P      E  F      K+         + 
Sbjct: 121 LRITGKGNKTRLVPLLSVVFDAVEKYRTLCPHDLEAAEPLFRGARGGKLQPAIIQRAMQK 180

Query: 276 KATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
             +  G+    + H +R   AT     G     +    G  ++   + YT G D  RL
Sbjct: 181 LRSAFGLPETATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYT-GVDASRL 237


>gi|78223482|ref|YP_385229.1| Phage integrase [Geobacter metallireducens GS-15]
 gi|78194737|gb|ABB32504.1| Phage integrase [Geobacter metallireducens GS-15]
          Length = 414

 Score = 92.8 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 48/358 (13%), Positives = 105/358 (29%), Gaps = 63/358 (17%)

Query: 20  KIIYYFRKGHGRRIRLPYPHEST---------FIPAYMSALTGSTPKREYI--NSPRKKP 68
           K   Y    +G+R  L   +               AY   + G  P    +    P+ + 
Sbjct: 44  KTFLYIYTINGKRKELKLGNYPEVTLKDARIKHGEAYARLVNGEDPVTPPVIKAEPQDEN 103

Query: 69  TTLKWLISEYRK------SAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRS 121
            T       Y +      S  W +       + +   ++  +          I  +   +
Sbjct: 104 LTFGHFTELYLQWSKDNHSPKWHN-------TIKCALNKDALPVWEYTLIASIKRRDAIA 156

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER---PKRKTEGI-RPWTKE 177
            +E+        I    +   +F +A+ +EY+  NP   ++    P  K +   R  +  
Sbjct: 157 FLENVARRGIQVINLHKATSSVFDYALEREYIESNPMAGLKAKTIPALKPKARERFLSDS 216

Query: 178 DMQQFKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--------- 225
           +++       EG    + + A + ++ +  R  +      + +Q  +   +         
Sbjct: 217 EIKHVWKAIDEGPGYDETKRALKLIMVTAQRPGEVAAMHRREIQTGVGKPRCKICKRCGW 276

Query: 226 ------TQKTGTIITVELPDGFMKLLAMTPIGKETFFIN-NDKQKMNATQFSIWFKAKAT 278
                   K G    + L    ++L+      +   F +  D Q +N    S     +  
Sbjct: 277 WTIPAERMKNGEEHRIYLTPTALELIG---DAEGYIFPSPQDGQPINRNSLSQLVSRERN 333

Query: 279 KAGVNK------------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
               N             + H +R+ + T+ A  G            K     + Y +
Sbjct: 334 NKKPNGEMYPPYYGLPEWTPHDLRRTARTLLARVGVPEEHAEEVLSHKKEGLVDRYNR 391


>gi|330432599|gb|AEC17658.1| site-specific tyrosine recombinase XerC [Gallibacterium anatis
           UMN179]
          Length = 339

 Score = 92.8 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 41/252 (16%), Positives = 91/252 (36%), Gaps = 13/252 (5%)

Query: 83  HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTS 139
           H   ++ ++  S+ + ++ +          KI  +H+++ +++ K      +S  +  + 
Sbjct: 79  HARQVSKSTAESYRNSYNHLSAII-SMPIHKIKYRHLQNALDAMKEKGLSYASLKKVRSL 137

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKT-EGIRPWTKEDMQQFKSFWSEGSQPRLAFEF 198
           +  LF  A+  E+   +    ++  K       + +T++ + +    W   +        
Sbjct: 138 INQLFAHAIINEWTDKSYGQYLQMGKNTPVHPHKIFTRQQINKL---WQCQTTDTDLALI 194

Query: 199 LLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKT--GTIITVELPDGFMKLLAMTPIGKET 254
           LLYSG+R  +  +    ++  +   F I T KT  G  I    P     +       ++ 
Sbjct: 195 LLYSGMRVGELLQLQRSNINLKQKYFDITTSKTKAGIRIIPIHPRILPIVERRLQKKQKY 254

Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWK 314
            F++   Q +   + +  F           + H  R   AT+   AGA         G  
Sbjct: 255 LFVDETGQPLTYAKAATQFDKAMKAIKAKHTTHDCRHTVATLLDAAGANKVARDRLLGHA 314

Query: 315 TVDQ-AETYTKG 325
           + +     YT  
Sbjct: 315 SSNVGDSVYTHK 326


>gi|262383463|ref|ZP_06076599.1| integrase [Bacteroides sp. 2_1_33B]
 gi|262294361|gb|EEY82293.1| integrase [Bacteroides sp. 2_1_33B]
          Length = 420

 Score = 92.8 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 36/228 (15%), Positives = 78/228 (34%), Gaps = 10/228 (4%)

Query: 110 DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
           D +    +    G +    + ++A  + + ++   K A   EY+ ++    V+      +
Sbjct: 182 DIKMFLLRAPMGGNKKGTISQNTASTYFSILKAGLKQAFIDEYLTVDISAKVKGITNIEK 241

Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSI- 224
                T  ++Q       +    + AF F + +GLR SD      + +    +    ++ 
Sbjct: 242 PRVALTMNEVQMLVDTPCKDDVLKRAFLFSILTGLRHSDIQTLKWKQIQQTSKGTWQAVV 301

Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284
             QKT       +    ++L        E            A+  S   K     +G+ K
Sbjct: 302 IQQKTKRPDYKPVIQQALQLCGERSSNDEALVFEGLTD---ASWISRPLKVWIEASGIKK 358

Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
             + H  R   A++  + G   + + +  G   V   + YT   +  +
Sbjct: 359 HITFHVARHSYASLLLENGVDIYTIKSLMGHTNVKTTQIYTHIVNEQK 406


>gi|262199524|ref|YP_003270733.1| integrase family protein [Haliangium ochraceum DSM 14365]
 gi|262082871|gb|ACY18840.1| integrase family protein [Haliangium ochraceum DSM 14365]
          Length = 438

 Score = 92.8 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 60/359 (16%), Positives = 111/359 (30%), Gaps = 51/359 (14%)

Query: 26  RKGHGRRIRLPYPHESTFIPAYMSAL---TGSTPKREYINSPRKKPTTLKWLISEYRKSA 82
           R G  + +       S    AY+ A                 R     L W+ S+  K  
Sbjct: 47  RTGKAKEVDRVVSDVSAQRAAYLRAEMMDALRVSAEPEAKRVRVGEYALSWMRSKALK-- 104

Query: 83  HWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVES-------------RKH 128
               L+  +  ++     D I+   GD  Y  +  + ++  V+              R++
Sbjct: 105 ----LSPGTARTYADALEDHILPAFGDLFYDALRKQDVQRWVDDALTNGWVSPSGEHRRY 160

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP-KRKTEGIRPWTKEDMQQFKSFWS 187
           + SS   +   +R + + A+    +  +P L +  P   + +     T +++ +F     
Sbjct: 161 SRSSVHAWFRVLRTMTRDAMDDLGLRRDPTLRISFPDATEPKEANTLTPDELARFLGKMR 220

Query: 188 EGSQPRLAFEFLL-YSGLRCSDSCRAGVQHLQNNIFSIK-------------TQKTGTII 233
           E      A    L Y+GLR   +              I+             T+K     
Sbjct: 221 ERFPQHYALTVTLAYTGLRFCHASALQWADWNEKGALIRVVRKQVRGRVGPVTRKKQAPH 280

Query: 234 TVELPDGFMKLLA---------MTPIGKETF-FINNDKQKMNATQFSIWFKAKATKAGVN 283
              +      +L            P   E + F ++       +  +  +K     AGV+
Sbjct: 281 EYPVEPELAGVLREHRAWMVREQAPGLAEGWMFPSSVGTLRAPSSLNKAWKRCLDAAGVS 340

Query: 284 KSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETY-TKGADRIRLGIKNSRRI 339
           +    HG+R     +   A   A    A  G  T +    Y T G D  R  +    R+
Sbjct: 341 RRFAVHGLRYTFTELVRRADVDAAVRRALTGHVTEEMQRHYSTVGLDEKRAAVAGVYRL 399


>gi|90421041|ref|ZP_01228944.1| tyrosine recombinase XerC [Aurantimonas manganoxydans SI85-9A1]
 gi|90334676|gb|EAS48453.1| tyrosine recombinase XerC [Aurantimonas manganoxydans SI85-9A1]
          Length = 319

 Score = 92.8 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 42/279 (15%), Positives = 78/279 (27%), Gaps = 30/279 (10%)

Query: 82  AHWGSLAVNSRISFESYFDQIIRKSGDF--------DYRKITTKHIRSGVESRKHTPSSA 133
           A     + ++  ++E    Q +    D+        D   + T  +R  + +R+   + A
Sbjct: 25  ADERRSSPHTIEAYERDLRQFLIFLTDYHARPAQLGDLADLKTADLRGFLAARRRDGAGA 84

Query: 134 IQF---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---- 186
                 L  +R   +   R+   +     ++  PK+     RP T +D            
Sbjct: 85  KTMGRGLAGVRSFIRHLERKGLASSAGAKAMRAPKQPKSLPRPLTVDDAMAVTEEAGAFA 144

Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT--QKTGTIITVELPDG- 240
                 ++       L   GLR S++       L +          K G    V L    
Sbjct: 145 ADAWIAARDVAILTLLYGCGLRISEALSLPGDALGDATARSMPVAGKGGKTRLVPLLPAV 204

Query: 241 ---FMKLLAMTP---IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKF 292
                +     P         F       +                G+    + H +R  
Sbjct: 205 LEAAAEYRRRCPYPLTADNALFRGARGGPLQPQIVQRAMARLRGVLGLPDSATPHALRHS 264

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            AT     G     +    G  ++   + YT   D+ RL
Sbjct: 265 FATHLLAGGGDLRTIQDLLGHASLSTTQNYT-AVDQARL 302


>gi|332090863|gb|EGI95955.1| integrase [Shigella boydii 5216-82]
          Length = 323

 Score = 92.8 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 54/314 (17%), Positives = 103/314 (32%), Gaps = 18/314 (5%)

Query: 19  GKIIYYFRKGH--GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76
           G  +   R G   GRRIR  +  +S  +      L          NS  ++P ++  LI 
Sbjct: 8   GGYLLDMRPGGRKGRRIRKKFKTKSDAVLYERWVLAQQHNNEWKGNSIDRRPLSV--LID 65

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK---HIRSGVESRKHTPSSA 133
            + K   +    + S  +      ++     D    K+ T     +R     +   PS+ 
Sbjct: 66  LWWK---YHGQLMRSGHNTHLKLLRLSEAMDDPCVHKLNTTMLTELRVSRIEQGIQPSTI 122

Query: 134 IQFLTSMRVLFKWAVRQEY-VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
            + + ++  +F   +   + +  NP   ++  K     +   +K +  Q     +E    
Sbjct: 123 NREIGALSAMFTALISSGHFLNDNPVQGLKGMKVNEREMGYLSKSESVQLLDALAENPDE 182

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252
           RLA E LL +G R  +      + + +   +    K     TV + +   +   +   G 
Sbjct: 183 RLAVEILLSTGARWGEVEALEQRRVLHCRITFSKTKNSKNRTVPISESLFE--KIKKRGG 240

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYG 312
           +  F   D   +         K  A      ++ H +R   A+     G     L    G
Sbjct: 241 KLVFPTLD-YPLVRD----VIKTVAPDIPDGQAVHALRHTFASHFMMNGGNILTLQKILG 295

Query: 313 WKTVDQAETYTKGA 326
              +     Y   A
Sbjct: 296 HAKIQTTMIYAHLA 309


>gi|301062571|ref|ZP_07203209.1| site-specific recombinase, phage integrase family [delta
           proteobacterium NaphS2]
 gi|300443336|gb|EFK07463.1| site-specific recombinase, phage integrase family [delta
           proteobacterium NaphS2]
          Length = 283

 Score = 92.8 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 31/207 (14%), Positives = 70/207 (33%), Gaps = 27/207 (13%)

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPK-------RKTEGIRPWTKEDMQQFKSFWS 187
           + L ++  +F +AVR +Y+  NP    ERP+       R+ + I+  + E ++       
Sbjct: 33  KILVTLGQIFNYAVRHQYMDHNPLNEAERPREQAREGERERDKIQILSPEQIKTLLDQ-E 91

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVE--------- 236
           +  + ++ F   +++G R  +   A  + +   N+   I+     +              
Sbjct: 92  KNPKFKMLFMLAIFTGARQGEILGAKWEDIDWKNSQIHIQRTFNKSRFFTPKTKTSTRRI 151

Query: 237 -----LPDGFMKL-LAMTPIGKETFFINNDKQKMNATQFSIW-FKAKATKAGVNK-SAHG 288
                +        LA      +  F N     +N +      F+       +     H 
Sbjct: 152 DIGPTVLKELRAWKLACPKNEHDLLFPNGAGGPINYSNLVQRHFRPALKATSLPLIRFHD 211

Query: 289 VRKFSATISADAGATAHELMATYGWKT 315
           +R   A++  + G     +    G  +
Sbjct: 212 LRHTFASLLIEQGENVKYIQTQLGHSS 238


>gi|138898385|ref|YP_001127570.1| putative integrase/recombinase Xer [Geobacillus thermodenitrificans
           NG80-2]
 gi|134268631|gb|ABO68825.1| Putative integrase/recombinase Xer [Geobacillus thermodenitrificans
           NG80-2]
          Length = 307

 Score = 92.8 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 44/292 (15%), Positives = 89/292 (30%), Gaps = 39/292 (13%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----K 127
           K ++ EY         + N+ IS+ +  +Q ++         +T+  IR  ++      +
Sbjct: 2   KKMLHEYETYLQEKGFSPNTVISYLNDVNQFLKDLHLRPGDYVTSADIRKWIQQMLNPAE 61

Query: 128 HTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP---WTKEDMQQ 181
             P   S+  + L S+R  + WAV    +  NP   ++  K   E        T+E+ + 
Sbjct: 62  GKPLAISTINRRLNSLRSFYAWAVEHHKIEQNPMKDIQDLKSADEDNEKIMWLTEEEFED 121

Query: 182 FKSF-------------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
                              +  + R     L Y+GLR  +     +  L   +  I+   
Sbjct: 122 LLHRMRKKPVQSRGVDPEEKYRRDRAVVYLLTYAGLRVEELSNLKLTDLDLEMKRIRIVG 181

Query: 229 TGTII-TVELPDGF-----------MKLLAMTP--IGKETFFINNDKQKMNATQFSIWFK 274
            G  + TV + +              ++    P        F +    K +        +
Sbjct: 182 KGMKVRTVPISNILLAELEDWLKFRAEMAKKKPHVAESPYVFYSQRSPKFSVRGIQRMIE 241

Query: 275 AKATKAGVNKSAHGVRKFSATISADA-GATAHELMATYGWKTVDQAETYTKG 325
           + +       + H  R         A      ++    G   +     Y K 
Sbjct: 242 SYSLP-NKKLTPHMFRHTFCKWMLKATNNDIEKVRRLAGHSNIATTSRYLKD 292


>gi|260577793|ref|ZP_05845728.1| integrase [Corynebacterium jeikeium ATCC 43734]
 gi|258604188|gb|EEW17430.1| integrase [Corynebacterium jeikeium ATCC 43734]
          Length = 391

 Score = 92.8 bits (229), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 61/358 (17%), Positives = 105/358 (29%), Gaps = 59/358 (16%)

Query: 11  VTKERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
           V K  T+ GK  +   +R   GR     +  +         A       R    +P  + 
Sbjct: 3   VQKRTTKTGKTRWVARYRDKTGREHSKSFDTQREAKQ--YLADQRVALTRGTWANPTLEK 60

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128
           TTL  L+        W +        F     + +    D     +    IR+ V + + 
Sbjct: 61  TTLGTLVE------DWINAGTEVSRPFRVSMMRNLGDLADHPVGTLAPADIRAWVATLQT 114

Query: 129 TP----------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW---- 174
                       S+    L +++++ + AV    +  NP   V  P   T     W    
Sbjct: 115 GRPWKGGAPLGVSAVSSALANVKLVLEQAVDDGLIPKNPARRVTAPAPTTR--VTWHDIP 172

Query: 175 TKEDMQQFKSFWSEGSQPR----------------LAFEFLLYSGLRCSDSCRAGVQHLQ 218
           TKE + Q   +   G   R                +       +GLR  +      Q++ 
Sbjct: 173 TKEQIDQLIRYARTGYGKREKGKKYSWFQAHPDLSVMIRVSAATGLRPGEVAGLRWQNVD 232

Query: 219 NNIFSI-------------KTQKTGTI--ITVELPDGFMKLLAMTPIGKETFFINNDKQ- 262
            +   +             +  KTG      + + D  +  +   P   E  F       
Sbjct: 233 FDNGQVLVLEQAMRTGAGTRPLKTGDKGIRALSVDDETLAAINELPRVDERVFHARWGGV 292

Query: 263 KMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
            M A ++S   +      GV+  + H  R F AT    AG     +    G  +    
Sbjct: 293 PMTAEKYSQALRRLCLVVGVDPVTPHSFRHFHATELLSAGVPVKAVQRRLGHSSARVT 350


>gi|241992519|gb|ACS73597.1| IntI1 [uncultured bacterium]
          Length = 315

 Score = 92.8 bits (229), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 42/306 (13%), Positives = 94/306 (30%), Gaps = 62/306 (20%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129
           ++ + R+   +   ++ +  ++ ++    IR  G      + +  + + +      RK +
Sbjct: 16  VLDQLRERIRYLHYSLRTEQAYVNWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75

Query: 130 PSSAIQFLTSMRVLFK--WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            S+  Q L ++   +         ++       + RP+         T +++ +   F  
Sbjct: 76  VSTHRQALAALLFFYGKVLCTDLPWLQ-----EIGRPRPSRRLPVVLTPDEVVRILGFL- 129

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQH--LQNNIFSIKTQKTGTIITVELPDGFMKLL 245
           EG   RL  + L  +G+R S+  +  V+     +    ++  K      + LP+     L
Sbjct: 130 EGEH-RLFAQLLYRTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSL 188

Query: 246 AMTPIGKETFFINN---------------------------------------------D 260
                    +++ +                                              
Sbjct: 189 REQLSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVR 248

Query: 261 KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           +  M    F   FK    +AG+ K  + H +R   AT    +G     +    G   V  
Sbjct: 249 RHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVST 308

Query: 319 AETYTK 324
              YT 
Sbjct: 309 TMIYTH 314


>gi|228912100|ref|ZP_04075819.1| Phage integrase [Bacillus thuringiensis IBL 200]
 gi|228847544|gb|EEM92479.1| Phage integrase [Bacillus thuringiensis IBL 200]
          Length = 385

 Score = 92.8 bits (229), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 50/354 (14%), Positives = 105/354 (29%), Gaps = 48/354 (13%)

Query: 13  KERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
             R R+ K  Y  R     + +               A      K    ++ +    T  
Sbjct: 3   SFRKRNDKWEYRIRYKEMGKYKETSKGGFKTKKEAQLAAAKIEEKLVNGSNIQDGKITFN 62

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
             + E+      G++A  + + +E      I+   G+   + +T    +  + +     S
Sbjct: 63  EYLYEWLNVFKKGNVAPRTYMVYEKNIRLHILPVFGELKLKDLTRIKYQKFINNLLEKYS 122

Query: 132 SAIQFLTSMRVLFKWAVR-----QEYVAINPCLSVE----RPKRKTEGIRPWTKEDMQQF 182
              + + ++ V    A+         +  NP   ++    R   K + I+ +  +++ QF
Sbjct: 123 K--KTVETINVTMHHALDTAVNELGILEKNPTTKIKLRTTRVSSKNDDIKCYDIDELHQF 180

Query: 183 KSF---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT---------- 229
            ++      G +    F FL  +GLR  +      + +      +   KT          
Sbjct: 181 LTYILNEKGGFKYYSLFMFLSRTGLRIGECLALQWEDIDFEEQKLFINKTLITTKRNEKI 240

Query: 230 --------GTIITVELPDGFMKLLAMTPIGKET--------------FFINNDKQKMNAT 267
                    +  T+ L    +  L    I +                 F + D   M   
Sbjct: 241 LFGPPKNRSSKRTISLDSSTISHLRKMKIEQNKNTLKNGKYYKEYNFVFTHEDNSCMLHP 300

Query: 268 QFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
               + +    K  +   + HG R   A     +GA    +    G  ++D   
Sbjct: 301 ATLKFLQQACKKGNLKYITLHGFRHTHAVHLLQSGANLKYVSERLGHSSIDMTA 354


>gi|254244434|ref|ZP_04937756.1| hypothetical protein PA2G_05292 [Pseudomonas aeruginosa 2192]
 gi|126197812|gb|EAZ61875.1| hypothetical protein PA2G_05292 [Pseudomonas aeruginosa 2192]
          Length = 333

 Score = 92.8 bits (229), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 40/325 (12%), Positives = 87/325 (26%), Gaps = 35/325 (10%)

Query: 15  RTRHGKIIY---YFRKGH-GRRIRLPYPHESTFIPAYMS---ALTGSTPKREYINSPRKK 67
             R     +   ++  G  GRRIR       +    Y     A+ G T +          
Sbjct: 2   TVRKDGKTWTADFYENGRSGRRIRKKGFATKSAAIRYEQDFFAVKGETGRPLDDR----- 56

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR- 126
              L  L+  +          +       +  + + ++ G+    +  +       + R 
Sbjct: 57  ---LSDLVKVWY---DLHGCTLKDGKQRLARCEALAKRLGNPLAFEFDSLAWARYRQRRL 110

Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
            +  P +       +  +F   +R   +   NP   V + K     +   + + + +   
Sbjct: 111 TEVKPETVNHEQRYLSAVFSELIRLGSWHKENPLGKVRQIKTDQVELTFLSLDQVARLLE 170

Query: 185 FWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
                +           L +G R  ++       +          K     +V +PD   
Sbjct: 171 ECKASTNNHTYPVALLCLATGARWEEAESLTRGAVHGGKVHYHRTKNRQSRSVPIPDELE 230

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISAD 299
           +L+         F +               F+    + G     +  H +R   A+    
Sbjct: 231 RLI---------FKVGMPGSGRLFMSCRAAFRCAYQRCGFQTPGQMTHILRHTFASHYMM 281

Query: 300 AGATAHELMATYGWKTVDQAETYTK 324
            G     L    G  ++     Y  
Sbjct: 282 GGGDILTLQRILGHSSITMTMRYAH 306


>gi|330968141|gb|EGH68401.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. actinidiae str. M302091]
          Length = 386

 Score = 92.8 bits (229), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 49/327 (14%), Positives = 95/327 (29%), Gaps = 43/327 (13%)

Query: 33  IRLPYPHESTFIPAYMSA----------LTGSTPKREYINSPRKKPTTLKWLISEYRKSA 82
             LP      F P Y             + G    +           T    + EY    
Sbjct: 54  THLPDGDG-VFDPRYSRCAGVIQRGVHHVAGLGMAQRIAEPVAVGDRTFADWLGEYDLIY 112

Query: 83  HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE--SRKHTPSSAIQFLTSM 140
               L+  +  S +S    +    G    R I T  I + +   S+      +  + + +
Sbjct: 113 TERGLSAQTVRSMKSRLKTVKNALGQKSIRSIRTMDIATFLATFSKAGKAPMSKAYRSLL 172

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200
           R  F  A+   +  +NP  + +  + K +  R     ++ +     ++ +  + A E  L
Sbjct: 173 RDAFNEAIAAGWCDLNPVDATKAARSKVKRARL--SLELWKAAHAATDRTWLKRAMELAL 230

Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK----------------L 244
            +G R  D      +  ++    +   KTG  + +                        L
Sbjct: 231 LTGQRRDDIGSMLFKDERDGFLHVIQSKTGARLRISTSLRLEAIGLDLSSVIKSCRDRVL 290

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAK----ATKAGVNK-----SAHGVRKFSAT 295
                    T  +      +     ++ F       A   G++      S H +R  +A 
Sbjct: 291 SKHLVHHTRTVAVAKAGTPIKLNTLTLAFAEARDRGAAALGIDLGENPPSFHEMRSLAAR 350

Query: 296 ISADAGATAHELMATYGWKTVDQAETY 322
           + A  G    +L    G +     E Y
Sbjct: 351 LHALEGRDPQKL---LGHRNAAMTEMY 374


>gi|270294584|ref|ZP_06200786.1| tyrosine type site-specific recombinase [Bacteroides sp. D20]
 gi|270276051|gb|EFA21911.1| tyrosine type site-specific recombinase [Bacteroides sp. D20]
          Length = 406

 Score = 92.8 bits (229), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 46/275 (16%), Positives = 99/275 (36%), Gaps = 26/275 (9%)

Query: 90  NSRISFE---SYFDQIIRK---SGDFDYRKITTKHIRSGVESRKH----TPSSAIQFLTS 139
            +   +E    Y ++ I+K     D     +    I       K       +SAI  L +
Sbjct: 132 KTVQRYETTTRYLEEFIKKEYQLSDIALNNLEVNFISKFDAFLKIEKGCAQNSAITRLKN 191

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLAF 196
           ++ + + A+  +++  +P  +  R K +       T ++++   +         Q R  F
Sbjct: 192 LKKIIRIALENDWIKKDP-FAYYRFKLEETDPEFLTMDEIKIILAKEFTIKRVEQVRDVF 250

Query: 197 EFLLYSGLRCSDSCRAGVQH-LQNN----IFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251
            F +++GL  SD      +H +++N          QKT  +  + +      +L      
Sbjct: 251 VFCIFTGLAFSDVKDLSPEHLVKDNKGELWIRKNRQKTKIMCNIPVLPVAASILEKYKNV 310

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATIS-ADAGATAHELM 308
            E          ++  + + + K  A   G+ K+   H  R   AT      G +   + 
Sbjct: 311 AE--CTGKLLPVLSNQRMNSYLKEIADVCGLQKNLCTHSARHSYATSICLANGVSMENVA 368

Query: 309 ATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343
              G       + Y +  D+  L  K+ ++++S +
Sbjct: 369 KMLGHADTSVTKHYARVLDQNIL--KDMQKVNSCL 401


>gi|270293691|ref|ZP_06199893.1| integrase [Bacteroides sp. D20]
 gi|270275158|gb|EFA21018.1| integrase [Bacteroides sp. D20]
          Length = 370

 Score = 92.8 bits (229), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 37/225 (16%), Positives = 79/225 (35%), Gaps = 12/225 (5%)

Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
            +      + + +SA  + ++ R L K   R   +  N    +++ + +       + E+
Sbjct: 145 AKQLRRDDRISKNSASGYWSTFRGLLKILYRNRLIKTNINDFLDKIETEDTPKDYLSVEE 204

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-----QNNIFSIKTQKTGTII 233
           + +      +    + A  F   + LR SD        +             TQKT T  
Sbjct: 205 LYKLAETPCKKPILKTAALFSCLTSLRISDILSLQWHEIVDFAAGGKCVHTITQKTKTED 264

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRK 291
            + + D  ++L+  +P      F     + +  +      K    +AG+ K  + H  R+
Sbjct: 265 IIPISDEALQLIGYSPEKTGLVF-----KGLKRSWTQHPMKEWIREAGITKNITFHSYRR 319

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
             AT+   AG     + +    +++   + Y K  D  +    N 
Sbjct: 320 TYATLQGAAGTDIRTIQSNMAHRSITTTQRYMKVVDSNKREASNR 364


>gi|317500069|ref|ZP_07958304.1| integrase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|316898554|gb|EFV20590.1| integrase [Lachnospiraceae bacterium 8_1_57FAA]
          Length = 397

 Score = 92.8 bits (229), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 63/377 (16%), Positives = 112/377 (29%), Gaps = 59/377 (15%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
            ++ K     G   Y +          P P E    P+            E       K 
Sbjct: 24  KYLYKYVDAFGNTKYVYAWRLTP--TDPTPKEKREKPSLRELEQQIRRDIEDGIDSTGKK 81

Query: 69  TTLKWLISEY-RKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRSGVESR 126
            T   L   Y +++A   ++  +++   E     +   K G      I     +      
Sbjct: 82  MT---LCQLYAKQNAQRANVKKSTQKQREQLMRLLKEDKLGARSIDTIKPSDAKEWALRM 138

Query: 127 KHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPC--LSVERPKRKTEGIRPWTKEDMQQ 181
           K      ++      S++  F  A++ + V  NP      E  +  T+     T+E  Q 
Sbjct: 139 KDKGFSYNTINNHKRSLKASFYIAIQDDCVRKNPFDFKLSEVLENDTKEKVALTEEQEQA 198

Query: 182 FKSFWSEGSQPRLAFE---FLLYSGLRCSDSCRAGVQHLQ----------------NNIF 222
             SF    +     ++    LL +GLR S+ C   V  +                    +
Sbjct: 199 LLSFIKTDNVYHKHYDDVLILLKTGLRISELCGLTVADIDFKNEVVIIDHQLLKSKEQGY 258

Query: 223 SIKTQKTGTIIT-VELPDG----FMKLLAMTPIGKET--------FFINNDKQKMNATQF 269
            I+T KT + I  V L       F +++   P  +           F+N+  +   A  +
Sbjct: 259 YIETPKTKSGIRQVPLSRETIQAFQRVMKKRPKAEPFVIDGQSNFLFVNHKGKPKVAIDY 318

Query: 270 SIWFKAKATKAGVNK--------SAHGVRKFSATISADAGATAHELMATYGWKTVD---- 317
           +  F     K   +         + H +R    T  A       +L    G   +     
Sbjct: 319 NALFVRMVKKYNKHHKDNPLPHITPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISITMN 378

Query: 318 ---QAETYTKGADRIRL 331
               A   T  ++  RL
Sbjct: 379 WYAHASIDTAKSEVQRL 395


>gi|148252009|ref|YP_001236594.1| site-specific tyrosine recombinase XerC [Bradyrhizobium sp. BTAi1]
 gi|146404182|gb|ABQ32688.1| tyrosine recombinase XerC subunit [Bradyrhizobium sp. BTAi1]
          Length = 324

 Score = 92.8 bits (229), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 39/280 (13%), Positives = 82/280 (29%), Gaps = 35/280 (12%)

Query: 85  GSLAVNSRISFESYFDQ----IIRKSGD----FDYRKITTKHIRSGVESRKH---TPSSA 133
             L+  +  ++     Q    +    G       +  +    IR+ +  R+       S 
Sbjct: 36  RRLSPKTVEAYARDLRQCLQFLCTHWGGPVTLARFAALEAADIRAFMAMRRADDIAGRSL 95

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
           ++ L  +R   ++  R+    +     +  PK      +P   +  ++         + R
Sbjct: 96  MRTLAGLRSFGRFLEREGQGKVGALAGIRAPKIAKSLPKPLPMDAAKRLADADERAGETR 155

Query: 194 ---------LAFEFLLYSGLRCSDSCRAGVQHL---QNNIFSIKTQKTGTIITVELPDGF 241
                         L  SGLR S++     + +         + T K      V +    
Sbjct: 156 ETWVLARDAAVMALLYGSGLRISEALGLKRREVPRPGEGDVLVVTGKGNKTRMVPVLQNV 215

Query: 242 MKLLA--------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRK 291
           ++L+           P     F        ++     +  +      G+    + H +R 
Sbjct: 216 LQLIDDYARLCPYPLPAEGPMFL-GAKGGPLSPRIIQLAMERLRGALGLPDSATPHALRH 274

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
             AT     G     +    G  ++   + YT G D  RL
Sbjct: 275 SFATHLLSRGGDLRAIQELLGHASLSTTQVYT-GIDSERL 313


>gi|224538864|ref|ZP_03679403.1| hypothetical protein BACCELL_03760 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519518|gb|EEF88623.1| hypothetical protein BACCELL_03760 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 330

 Score = 92.8 bits (229), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 37/270 (13%), Positives = 89/270 (32%), Gaps = 14/270 (5%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE- 124
           +   T   L+  +  +         +   + S   Q+++K         +T+ IR+ +  
Sbjct: 47  EDTATNDRLLEIFLSAKQVEGCTTPTIKYYSSTIKQLLKKMPKK-VVDYSTEDIRAYLAV 105

Query: 125 ---SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
                K +  +           F W   ++Y+  +P   + + K  T+     T E+++ 
Sbjct: 106 FQRKNKSSKVTIDNIRRIFSSFFAWLEEEDYIIKSPIRRIHKVKTGTQVKEILTDENIEH 165

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDG 240
            +    +  +     + L  +G+R  +  +   + +  N    I   K      V     
Sbjct: 166 LRDNCIK-IRDLAMIDLLASTGMRVGELVKLDREDINFNERECIVFGKGNKERIVYFNAR 224

Query: 241 ----FMKLLAMTPIGKETFFINNDKQK--MNATQFSIWFKAKATKAGVNK-SAHGVRKFS 293
                 + L+      +  F++  K    +  +      +    +A + +   H  R+  
Sbjct: 225 AKIHLQQYLSTRKDRNKALFVSLAKPHNRLQISGVETRLRKIGRQAKIVRVHPHKFRRTL 284

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYT 323
           AT++ D G    ++    G   +D    Y 
Sbjct: 285 ATMAIDKGMPVEQVQKLLGHVKIDTTMHYA 314


>gi|78777136|ref|YP_393451.1| Phage integrase [Sulfurimonas denitrificans DSM 1251]
 gi|78497676|gb|ABB44216.1| Phage integrase [Sulfurimonas denitrificans DSM 1251]
          Length = 393

 Score = 92.8 bits (229), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 60/326 (18%), Positives = 105/326 (32%), Gaps = 38/326 (11%)

Query: 57  KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT 116
           K         K  TL+    E+ +             +   Y + I    G  +  +IT 
Sbjct: 65  KEPIGIEEEAKTWTLQDFAEEFFELQKTQIRPHTLERNIMHYNNHIAPYFGKRELGRITP 124

Query: 117 KHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT----EG 170
             I        +K+   +  +F + +  ++  A+  + V  NP   V  PK +     E 
Sbjct: 125 LEIERWQNQLLQKYKHLTVQKFRSILFSIYDKALHNDLVLKNPLEKVTAPKVQNNIKIEE 184

Query: 171 IRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ--- 227
           I P+T++++ Q           +   + +  +G+R  +        +     +IK +   
Sbjct: 185 INPFTEKELNQIIEH--ANGYMKNFIKLMAATGMRPGEIIALKWSDIDFEKRTIKVERTR 242

Query: 228 ---KTGTIITVEL----------------PDGFMKLLAMTPIGKETFFINNDKQKM-NAT 267
              K G  I   L                 D  M  L +T    E  F+N       N  
Sbjct: 243 LRAKKGEDIVDGLTKIKSSNRFVDMLNATHDSLMAQLELT-SNSEYIFLNQSNMPFYNHD 301

Query: 268 QFSIWFKAKATKAGVNKSA-HGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK- 324
              + F+    ++GV     + +R   A+     GA    +    G K V    + YTK 
Sbjct: 302 IIGVNFRKILKQSGVKARPLYNLRHTFASQMISKGADITWVSKMLGHKDVSITLKIYTKF 361

Query: 325 --GADRIRL-GIKNSRRISSVVDSDD 347
               D  RL  I    +     D+ D
Sbjct: 362 IQEDDETRLKKIAQMDKFMVKFDNSD 387


>gi|326331609|ref|ZP_08197898.1| putative integrase/recombinase XerD [Nocardioidaceae bacterium
           Broad-1]
 gi|325950597|gb|EGD42648.1| putative integrase/recombinase XerD [Nocardioidaceae bacterium
           Broad-1]
          Length = 334

 Score = 92.8 bits (229), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 41/255 (16%), Positives = 91/255 (35%), Gaps = 15/255 (5%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI----RSGVESRKHTPSSAIQFLTSMR 141
           S A ++R ++              +   +          +     + +P++  + L+++ 
Sbjct: 48  SYAGHTRAAYARDLADWFGWCAALEIDPLAANRAMVDGYARHLETRRSPATIARRLSAIA 107

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE-DMQQFKSFWSEGSQPRLAFEFLL 200
             +++ V ++ ++ +P   ++RPK   +         + + F +   E S    A   LL
Sbjct: 108 GFYRYGVAEDVLSASPAQHIKRPKTSNDSQTLGMDRGEARAFLAAAREHSSRAAALVMLL 167

Query: 201 YS-GLRCSDSCRAGVQHL---QNNIFSIKTQKTGTIITVELPDGFMKLLAM--TPIGKET 254
              GLR S++  A V  L   + +     T+K G    V L     + L           
Sbjct: 168 LHDGLRISEALGADVTDLSHSRGHRILTITRKGGARRDVVLNPATSQALDAYLDARVDGP 227

Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGVNK----SAHGVRKFSATISADAGATAHELMAT 310
            F+ +   + + ++     +     AG+      S H +R    T++ +AG    ++   
Sbjct: 228 VFVTSTGNRWHRSEAFRLIRRLGASAGIEHGDKLSPHSLRHTFVTLAREAGVPLEDVQDA 287

Query: 311 YGWKTVDQAETYTKG 325
            G         Y +G
Sbjct: 288 AGHADPRTTRRYDRG 302


>gi|303243919|ref|ZP_07330259.1| integrase family protein [Methanothermococcus okinawensis IH1]
 gi|302485855|gb|EFL48779.1| integrase family protein [Methanothermococcus okinawensis IH1]
          Length = 291

 Score = 92.8 bits (229), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 43/267 (16%), Positives = 91/267 (34%), Gaps = 20/267 (7%)

Query: 74  LISEYRKSAHWGS-LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTP 130
           L+ +Y     + S  +  +   + S     +    D  +  IT         S   K + 
Sbjct: 8   LVRKYL---DFHSSKSKETLKRYRSSLHIFMEFFPDKSWDDITVDDAIFFYNSYLSKVSK 64

Query: 131 SSAIQFLTSMRVLFKWAVRQEYV-AINPCLSVERPKRKTEGIR-PWTKEDMQQFKSFWSE 188
            + ++ L  +     W V  +Y+   N  L V+  K +  G      +E++    S   +
Sbjct: 65  DTVVKRLKDVSRFLDWCVEYKYILQNNIKLYVKSLKLQNNGRDISLNEEEVNILLSNIKD 124

Query: 189 GSQPRLAFEFLLYSGLRCSDS--CRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
                +   F+L +G+R S+         HL++ +  I+  K      V + D     L+
Sbjct: 125 YLY-YVYTLFILTTGVRISEFKNITMNDIHLEDRLVYIRGGKGNKDRMVFICDELYPFLS 183

Query: 247 MTPIGKETF------FINNDKQKMNAT---QFSIWFKAKATKAGVNKSAHGVRKFSATIS 297
                +E         +N +  K++     ++  + +  +    V  + H +R    T++
Sbjct: 184 NYIKHREMLNPKTDKLVNKNGYKLSEGHICEYRDYLREVSKGLSVKVTPHVLRHTFGTLA 243

Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324
              G     L    G  ++     Y  
Sbjct: 244 CKHGMNLQVLSKLMGHSSMAITSKYLH 270


>gi|254717978|ref|ZP_05179789.1| site-specific tyrosine recombinase XerC [Brucella sp. 83/13]
 gi|265982921|ref|ZP_06095656.1| tyrosine recombinase xerC [Brucella sp. 83/13]
 gi|306838931|ref|ZP_07471758.1| tyrosine recombinase XerC [Brucella sp. NF 2653]
 gi|306842934|ref|ZP_07475568.1| tyrosine recombinase XerC [Brucella sp. BO2]
 gi|264661513|gb|EEZ31774.1| tyrosine recombinase xerC [Brucella sp. 83/13]
 gi|306286862|gb|EFM58387.1| tyrosine recombinase XerC [Brucella sp. BO2]
 gi|306406001|gb|EFM62253.1| tyrosine recombinase XerC [Brucella sp. NF 2653]
          Length = 315

 Score = 92.8 bits (229), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 49/291 (16%), Positives = 92/291 (31%), Gaps = 31/291 (10%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFES----YFDQIIRKSGDFD----YRKITTKHIRS 121
           L     E+ KS      L+ N+ I++E     +   +    G+         +    +RS
Sbjct: 15  LAAAREEWLKSLKTMRRLSDNTLIAYERDTRQFLQFLTGHLGEPPSLKEIGNLRIADLRS 74

Query: 122 GVESRKHTPSSAIQF---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
            + +R++  + A      L  +R L +   ++  V      ++  P++     +P T +D
Sbjct: 75  FLANRRNDGAGARTLGRGLAGVRSLLRHLEKRGLVNAAGASAMRAPRQPKSLPKPLTADD 134

Query: 179 MQ-------QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKT 229
            +       Q        ++       L   GLR S++       L +        T K 
Sbjct: 135 ARRVVSADGQMAEEPWIAARNAAVLTLLYGCGLRISEALGLSGDALSDPSARSMTITGKG 194

Query: 230 GTIITVELPDGFMKLLAMTPI-------GKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
                V L     K +A             +  F       ++A       +      G+
Sbjct: 195 SKTRLVPLLPAVHKAVAQYRALCPFDLSAGQPLFRGAKGGPLHAAIIQREMQKLRAGLGL 254

Query: 283 N--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
               + H +R   AT     G     +    G  ++   + YT G D  RL
Sbjct: 255 PDSATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQVYT-GVDTQRL 304


>gi|253569335|ref|ZP_04846745.1| transposase [Bacteroides sp. 1_1_6]
 gi|251841354|gb|EES69435.1| transposase [Bacteroides sp. 1_1_6]
          Length = 409

 Score = 92.8 bits (229), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 44/265 (16%), Positives = 98/265 (36%), Gaps = 22/265 (8%)

Query: 89  VNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVESRKHTPSSAIQFLTSMRVLFK 145
            ++ IS + Y      +  D    +I           + ++    ++   +L + R ++ 
Sbjct: 136 HSTYISLKKYIGMKSARKSDIRMEEINFSFVVGYEDYLNAQGLARNTINYYLRNFRTIYN 195

Query: 146 WAVRQEYVAI--NPCLSVERPKRKTEGIRPWTKEDMQQFKSF-WSEGSQPRLAFEFLLYS 202
            ++R  +     NP   ++    KT   R   K+DM++  S      S   +A +  L+S
Sbjct: 196 SSIRDGFKPKSENPFTYIQTKPCKTIK-RAINKDDMKKLSSLILPVHSGMDIARDMYLFS 254

Query: 203 ----GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFIN 258
               G+   D      +++++ I S +  K+  +I + +      L+       E  F  
Sbjct: 255 FYAQGMAFVDIVFLKKKNIRDGILSYRRHKSQQLIHIVVTPQMQGLIDKYANDSEYVFPI 314

Query: 259 NDKQ---------KMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHEL 307
            D           ++   + + + K    +  +N   + +  R   AT++ ++GA    +
Sbjct: 315 IDTSLSTSIYDQYRLALGRVNRYLKKITFRLNINVRLTTYTARHTWATLARESGAPISII 374

Query: 308 MATYGWKTVDQAETYTKGADRIRLG 332
            A  G  + +    Y K  D+  L 
Sbjct: 375 SAGLGHTSEEMTRVYLKEFDQETLA 399


>gi|150010374|ref|YP_001305117.1| integrase [Parabacteroides distasonis ATCC 8503]
 gi|149938798|gb|ABR45495.1| integrase [Parabacteroides distasonis ATCC 8503]
          Length = 310

 Score = 92.8 bits (229), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 49/298 (16%), Positives = 98/298 (32%), Gaps = 33/298 (11%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTK---HIRSGVESRKH 128
            I+  R+   +     +S  S++   +  +R  G     Y +I  +     +  +  R+ 
Sbjct: 13  YIARLREQGRY-----SSAKSYQDALNSFLRFCGQEMILYTRIDREMLLRYQDYLRDREC 67

Query: 129 TPSSAIQFLTSMRVLFKWAVRQE------YVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           + ++   ++  +R ++  A+         Y+     L V+  ++K           M   
Sbjct: 68  SWNTVSTYMRRIRRVYGLAMENGEAPFSRYLFKGIFLGVKSKQKKALPAESLRL-LMTAP 126

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
            +        R      L+ G+   D        ++N +     QKTGT + VE+     
Sbjct: 127 LAAPELRKTQRALCLMFLFCGMAFVDFAHLKKSDIRNGVLRYNRQKTGTPMLVEIQPVAR 186

Query: 243 KLLAM----TPIGKETFFINNDKQKMNATQFS----------IWFKAKATKAGVNK--SA 286
           +LLA     T       F      K     F              K  A   GV +  ++
Sbjct: 187 ELLAALMTDTLRDSPYLFTFLSGTKTGEEAFREYTSALADFNRSLKELANACGVTEIVTS 246

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
           + +R   AT   + G     +    G +++   + Y K     R+   N     S+ +
Sbjct: 247 YSIRHSFATTLKEQGVPIEMISELLGHQSIKTTQIYLKSFSLDRMSAVNKACFESIYN 304


>gi|60256815|gb|AAX14926.1| integrase [Xanthomonas perforans]
          Length = 339

 Score = 92.8 bits (229), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 42/304 (13%), Positives = 92/304 (30%), Gaps = 58/304 (19%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH----T 129
           L+ + R        ++ +  ++ S+  + I  SG     ++    + + +         +
Sbjct: 18  LLDQVRDRLRVRHYSLRTEQAYLSWIRRFILASGRRHPAQMGQAEVEAFLTRLATDGQVS 77

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
             +  Q L ++  L++  +R E        ++ R KR        ++E++ +  +     
Sbjct: 78  AGTQNQALAALLFLYREVLRIELP---WMENLVRAKRPRRIPVVLSREEVARLLAALEGP 134

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTGTIITVELPDGFMKLLAM 247
               L    L  SG+R  +  R  ++ + +      ++  K G    V LP    ++L  
Sbjct: 135 CW--LMASLLYGSGMRLLECLRLRIKDVDDARGEIVVRDGKGGKDRRVPLPRSLKEVLQR 192

Query: 248 T------------PIGKETFFI---------------------------------NNDKQ 262
                          G    F+                                    + 
Sbjct: 193 QRERALLLHAADLAAGTGRVFLPHALARKYPNAGAEPGWQYLFPSAPQSRDPRSGRVGRH 252

Query: 263 KMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
            ++        +     AG+    + H +R   AT   +AG     +    G K V   +
Sbjct: 253 HVSEEVLQRAVQMARRHAGIVKPATCHTLRHSFATHLLEAGHDIRTVQELLGHKDVATTQ 312

Query: 321 TYTK 324
            YT 
Sbjct: 313 IYTH 316


>gi|326402863|ref|YP_004282944.1| tyrosine recombinase XerC [Acidiphilium multivorum AIU301]
 gi|325049724|dbj|BAJ80062.1| tyrosine recombinase XerC [Acidiphilium multivorum AIU301]
          Length = 313

 Score = 92.4 bits (228), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 43/242 (17%), Positives = 83/242 (34%), Gaps = 24/242 (9%)

Query: 109 FDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER-P 164
            D   ++    R+ +          ++  + L+++R  F+W +RQ +  IN    + R P
Sbjct: 60  ADLAALSLADFRAWLAKAASDGVGNATRAKKLSAVRSFFRW-LRQRHGMINEAPGLLRTP 118

Query: 165 KRKTEGIRPWTKEDMQQF-------KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217
           K +    R  T  D            +  +  ++       L  +GLR  ++    +  L
Sbjct: 119 KSRRPLPRALTAPDAAAVVDSLGDDAASPALAARDTALMALLYGAGLRIHEALGLNIGDL 178

Query: 218 --QNNIFSIKTQKTGTIITVELPDGFMKLLA------MTPIGKETFFINNDKQKMNATQF 269
             +    S++  K G    V L     + +A        P      F+     ++N    
Sbjct: 179 PPEGAPLSVR-GKGGRQRIVPLLPVLRREIASWLRHHPAPTPDAPLFLGARGARLNPGVV 237

Query: 270 SIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GA 326
               +      G+  + + H +R   AT     GA    +    G  ++   + YT   A
Sbjct: 238 QRRLRDFRRLNGLPEHATPHALRHSFATHLLANGADLRAIQELLGHASLSTTQRYTAVDA 297

Query: 327 DR 328
           DR
Sbjct: 298 DR 299


>gi|323977174|gb|EGB72261.1| bacteriophage lambda integrase domain-containing protein
           [Escherichia coli TW10509]
          Length = 376

 Score = 92.4 bits (228), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 58/377 (15%), Positives = 114/377 (30%), Gaps = 64/377 (16%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKR-------- 58
           L P+  K   R+ K+ + +R     +       +        +       ++        
Sbjct: 14  LSPYFDK---RNNKVYWRYRHPITGKNHGLGSIDQKLAETIAAEANSRLARQQMEQMLSL 70

Query: 59  -EYINSPRKKPTTLKWLISEYRKS----AHWGSLAVNSRISFESYFDQIIRKSGDFDYRK 113
            E I +     +T+   ++ YRK        G + +N+     +       + G      
Sbjct: 71  QEKIINDTGGSSTVSIFLNNYRKIQQERYENGEIKLNTLKQKAAPLRVFDERFGTRPLDA 130

Query: 114 ITTKHIRSGVESRKHTPSSAIQ--FLTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTE 169
           IT K + S +E  K    + +   F   +  +F+ A +   V    NP  S ++P+    
Sbjct: 131 ITVKDVVSVLEEYKSRGHNRMGQIFRKVLIDVFREAQQTGDVPPGFNPAESAKKPQV-RI 189

Query: 170 GIRPWTKEDMQQ-FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
             +  T ++    + +   +G   +      L +G R SD C+     +++    ++ QK
Sbjct: 190 SRQRLTFDEWTMIYNAAEKDGYFLQRGMLLALMTGQRLSDICKMQFSDIRDGYLHVEQQK 249

Query: 229 TGTIITVE-----------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265
           TGT I +                        L    +         K           + 
Sbjct: 250 TGTRIAIPLALRCDKLNLTLDDVVSSCRDCVLSPWLLHHHHAKGTAK-------RGGMVK 302

Query: 266 ATQFSIWFKAKA-------TKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
               ++ FK             G   S H  R  S  +  + G          G      
Sbjct: 303 PATLTVAFKKARDSVDYNWRANGTPPSFHEQRSLSERLFREQGIDT---QILLGHSNQKM 359

Query: 319 AETY--TKGADRIRLGI 333
            + Y   +G +  +L I
Sbjct: 360 TDIYNDARGKEWKKLVI 376


>gi|319653703|ref|ZP_08007800.1| hypothetical protein HMPREF1013_04417 [Bacillus sp. 2_A_57_CT2]
 gi|317394546|gb|EFV75287.1| hypothetical protein HMPREF1013_04417 [Bacillus sp. 2_A_57_CT2]
          Length = 178

 Score = 92.4 bits (228), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 68/160 (42%), Gaps = 3/160 (1%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--TPSS 132
            + Y+        +  +   ++     +I+  GD     ITT+ I+  +         SS
Sbjct: 7   WNLYKADKQIQGYSSQTLKVYKVQMSLLIKYFGDIKITDITTESIKLYLGEVAAELKASS 66

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
               +  ++ LFKWA  ++YV+INP  +++ PK ++   +  T+E+++ F+      +  
Sbjct: 67  LCHRIRFIKSLFKWAQEEKYVSINPVSTIKEPKPESTIPKFLTEEEIELFREACKT-TFE 125

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
           +  FEF+  +G R  ++       +     S+     G  
Sbjct: 126 KALFEFMYSTGCRIGEAVNLDKHSINMAEQSVIVFGKGKK 165


>gi|295106964|emb|CBL04507.1| Site-specific recombinase XerC [Gordonibacter pamelaeae 7-10-1-b]
          Length = 407

 Score = 92.4 bits (228), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 52/372 (13%), Positives = 118/372 (31%), Gaps = 59/372 (15%)

Query: 20  KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYR 79
           K     +   G + R        F   +  A          +++P     T      ++ 
Sbjct: 23  KWRLRVQTDKGEKPR-------RFTGTWTQAQEALKEFIGELSTPV-SDLTFGEYAEKWL 74

Query: 80  KSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLT 138
           +     G   V++          + R+ GD     I       G+ + K+  S + + L+
Sbjct: 75  RRRELSGDYEVDTLDKERQQIKLLDREFGDVRLIDIDKPRAEDGLLAIKNGNSPSGRVLS 134

Query: 139 S---------MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF---KSFW 186
                     M+ + + A+  + +  NP   V+ PK  T   +   +E + +F       
Sbjct: 135 GTYMNQAHARMKAIMESALDDDLIPRNPLAKVKAPKIDTPEKQALPRETLARFVCAMDAL 194

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-------------KTGTII 233
              S   +A    +  G+R  +        + +    ++               KT + +
Sbjct: 195 PLDSHT-VAARLAVLQGMRRGEIVCTPWGDVNSTSLFVRDSVSESTGRPKGGRPKTPSSV 253

Query: 234 T-VELPDGFMKLLAMTP--------------IGKETFFINNDKQKMNATQFSIWFKAKAT 278
             + L D   ++L                    +     +     M+      W++    
Sbjct: 254 RELPLMDYMAQILNRWKPVQAGMLACLGLEQTDETPICCSAIGGYMHPQNLDRWWRNNRG 313

Query: 279 KAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG---ADRIRLGIK 334
             G+   + H +R    T+    G+ +  + +  GW ++  A+TY      A+R     +
Sbjct: 314 TFGLEGVTLHELRHTYLTMLGATGSPSIVIKSLAGWASLAMADTYVHEDATANR-----E 368

Query: 335 NSRRISSVVDSD 346
             + + +V+D +
Sbjct: 369 AVKHLGNVIDFE 380


>gi|89890184|ref|ZP_01201695.1| site-specific integrase/recombinase XerD protein [Flavobacteria
           bacterium BBFL7]
 gi|89518457|gb|EAS21113.1| site-specific integrase/recombinase XerD protein [Flavobacteria
           bacterium BBFL7]
          Length = 295

 Score = 92.4 bits (228), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 39/274 (14%), Positives = 95/274 (34%), Gaps = 23/274 (8%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI------RSGVESRK 127
           +  Y     +    + N+  ++E   +Q      D    +I            + +  ++
Sbjct: 3   LKSYLDYLSFEKKYSQNTITAYEKDLEQFGLFLMDEYDLEIQNASYPIIRTWLALLLDQQ 62

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-----F 182
            +  +  + + +++  FK+ +  E +  +P  + +  K       P++K+++QQ     +
Sbjct: 63  LSSRTVNRKVAALKSYFKFLLLIEQIDYHPLSNHKSLKVSKNIQIPFSKQEVQQILNASY 122

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG- 240
            S   E  +  L  E    +G+R  +     ++++     +IK   K      + + +  
Sbjct: 123 DSEDFESVRDLLIIELFYVTGVRREELINLRIENVNLLSRTIKVVGKRNKERLIPMLESV 182

Query: 241 -------FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSAHGVRK 291
                   +   ++    +   F+     K+         K+        V  S H +R 
Sbjct: 183 KFKVEAYLLLKESIETDKRPELFVTRKGDKLYPGLVYRIIKSYFSKVSQKVKTSPHILRH 242

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKG 325
             AT   D GA  + +    G  ++   + YT  
Sbjct: 243 SFATHLLDEGADLNAVKELLGHASLASTQVYTHS 276


>gi|160945698|ref|ZP_02092924.1| hypothetical protein FAEPRAM212_03229 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443429|gb|EDP20434.1| hypothetical protein FAEPRAM212_03229 [Faecalibacterium prausnitzii
           M21/2]
          Length = 498

 Score = 92.4 bits (228), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 46/317 (14%), Positives = 99/317 (31%), Gaps = 49/317 (15%)

Query: 55  TPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFES--------YFDQIIRKS 106
           +P +E        P      I+++ K      + + +  S+E         YF+ +    
Sbjct: 161 SPIKEVDPCLDNSPVLFTDFITDWLKMMK-SRVEITTYTSYERAIVHKIVPYFEPLHYTL 219

Query: 107 GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
            D +      +        R  T ++ I +  ++R   ++A +   +  NP   VERP++
Sbjct: 220 QDMEQHPKYIQDFYQHELDRGLTANTVIHYHANIRKCLQYAFQIGMIRSNPADRVERPRK 279

Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-------- 218
           +      ++ E+++Q      +G           + GLR S+        +         
Sbjct: 280 EKFKSEIYSGEELEQLFKVI-QGDPSEFGVIMAAFYGLRRSEIVGLKWDAVDFENKKISI 338

Query: 219 ----------NNIFSIKTQKTGTI---ITVELPDGFMKLLAMTPIGKE------------ 253
                       +  I   KT T     T+ L     ++L      +E            
Sbjct: 339 QHTVVTAKVNGTVTEIARDKTKTKSSCRTLPLIPACEQMLNKMKKEQEQNRKVCGRSYCT 398

Query: 254 ----TFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELM 308
                 +++   +++     S  F        + +   H +R   A++    G +  E+ 
Sbjct: 399 DYLDYIYVDPMGKRIRPDFLSQHFPDFLVAHQMKRIRFHDLRHSCASLLYANGVSLKEIQ 458

Query: 309 ATYGWKTVDQAE-TYTK 324
              G   +      YT 
Sbjct: 459 EWLGHSDISTTSNIYTH 475


>gi|295109952|emb|CBL23905.1| Site-specific recombinase XerD [Ruminococcus obeum A2-162]
          Length = 382

 Score = 92.4 bits (228), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 55/304 (18%), Positives = 91/304 (29%), Gaps = 53/304 (17%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           TL     E+ KS        +   +   Y + I    G    +KI  + +          
Sbjct: 60  TLDAYFDEWEKSRIGVVKNSSINETRSKYDNHIKPALGKTKIQKIEKRAVLKLQRELSQK 119

Query: 130 --PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE------RPKRKTEGIRPWTKEDMQQ 181
              S+    L  ++ +   AVR E +  NP   V+      RPK      R  T+E+ Q 
Sbjct: 120 LCASTTNSVLIILKSVLNEAVRDEIIIKNPAAGVKPLRTDDRPKATETIHRALTREEQQI 179

Query: 182 FKSFWSEGSQPRLA--FEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKT---QKTG---- 230
           F     E  +  L   F F L +G+R ++        +   NN+  +     +K G    
Sbjct: 180 FMK---EAQKEWLYEFFCFSLCTGMRINEINALKWSDIDYINNMIHVTKTISRKKGGGIE 236

Query: 231 --------TIITVELPDGFMKLLAMTPIG-------------KETFFINNDK-----QKM 264
                   +   + + D   K+L M                     FI +          
Sbjct: 237 ETSPKSQTSKRDIPMNDTIKKILQMQKDKITLVYGDIFVKKISNPIFIGSRGATAVSSHS 296

Query: 265 NATQFSIWFKAKATKAGVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQ-AE 320
                    K    + G+     + H  R   AT   + G     L    G  ++   A+
Sbjct: 297 VGYSIDNVLKRLRQQ-GIEIERFTHHAFRDTFATRYIEEGGNMQTLKKILGHSSLAMTAD 355

Query: 321 TYTK 324
            Y  
Sbjct: 356 LYAH 359


>gi|262383616|ref|ZP_06076752.1| integrase [Bacteroides sp. 2_1_33B]
 gi|262294514|gb|EEY82446.1| integrase [Bacteroides sp. 2_1_33B]
          Length = 383

 Score = 92.4 bits (228), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 44/271 (16%), Positives = 85/271 (31%), Gaps = 30/271 (11%)

Query: 91  SRISFESYFDQIIRK--------SGDFDYRKITTK---HIRSGVESRKHTPS-------S 132
            R     +  +             G   + +I        R  + + K           S
Sbjct: 112 YRRQLRKHDQKWEFVYHHFYNFVHGKCTFEEIDIDLCNKFREYLLNAKQLRRDGHISKNS 171

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
           A  + ++ R L K   R   +  N    +++ + +       + E++ +      +    
Sbjct: 172 ASGYWSTFRGLLKILYRNRLIKTNINDFLDKIETEDTPKDYLSVEELYKLAETPCKKPIL 231

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHL-----QNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
           + A  F   + LR SD        +             TQKT T   + + D  ++L+  
Sbjct: 232 KTAALFSCLTSLRISDILSLQWHEIIDFAAGGKCVHTITQKTKTEDIIPISDEALQLIGY 291

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAH 305
           +P      F    K+           K    +AG+ K  + H  R+  AT+   AG    
Sbjct: 292 SPEKTGLVF-KGLKRSWTQQP----MKEWIREAGITKNITFHSYRRTYATLQGAAGTDIR 346

Query: 306 ELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
            + +    K++   + Y K  D  +    N 
Sbjct: 347 TIQSNMAHKSITTTQRYMKVVDSNKREASNR 377


>gi|257459633|ref|ZP_05624742.1| hydrogenase expression/formation protein [Campylobacter gracilis
           RM3268]
 gi|257443058|gb|EEV18192.1| hydrogenase expression/formation protein [Campylobacter gracilis
           RM3268]
          Length = 186

 Score = 92.4 bits (228), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 30/185 (16%), Positives = 71/185 (38%), Gaps = 18/185 (9%)

Query: 175 TKEDMQQFK------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKT 226
           ++E++++F        F S   + RL  + ++Y+G+R  ++     + +  + ++F I+ 
Sbjct: 2   SEEELKRFLDAINLSEFRSFAHRNRLIVKIIVYTGIRVGEAINLKRKDIAPEGDLFVIRI 61

Query: 227 QKTGTIITV------ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280
           +  G    +       + +    L       +   F+  +   +     S   +     A
Sbjct: 62  RGKGNKYRIVMIKRHLIEEHLNALETNFANKEGYLFVTKNGAPLTQAYVSGIVEKILMSA 121

Query: 281 GVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNS 336
           G+ K    AH +R   AT+          +    G  +++ +  YT   +D++RL  K +
Sbjct: 122 GIRKEKNGAHMLRHTFATMLYKKQKDLVLVQEALGHASLNTSRIYTHFDSDKLRLAAKVA 181

Query: 337 RRISS 341
                
Sbjct: 182 EEFEE 186


>gi|229599881|ref|YP_002860872.1| integrase/recombinase XerD [Clostridium botulinum Ba4 str. 657]
 gi|229260405|gb|ACQ51441.1| integrase/recombinase XerD [Clostridium botulinum Ba4 str. 657]
          Length = 212

 Score = 92.4 bits (228), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 77/212 (36%), Gaps = 22/212 (10%)

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE--RPKRKTEGI--RPWTKEDMQQFKS 184
              S  + LTS+  LFK        +IN    V+  R K + +       T++++++  +
Sbjct: 2   KAKSINRKLTSINQLFK--------SININYGVKCKRMKEQKQTFLDDVLTRDEIEKMLN 53

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK- 243
                 + +     L  +GLR S+  +  ++ ++     I   K G    + +P    + 
Sbjct: 54  KCGTNIRDKAIIMTLYKTGLRVSELLQLRIRDIRKKSIEI-EGKGGKYRYIIVPKELKEI 112

Query: 244 ----LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATI 296
               L    P+  +  F+  + + M+    +   K  A +A + K     H +R      
Sbjct: 113 WLQYLKVRKPVETDKLFVGTNGE-MHRHNINRIIKKYAVQARITKGKAHPHALRHSFCKA 171

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADR 328
            A        +    G + ++    YT+   +
Sbjct: 172 LAIQNVGIEVIADLAGHEDLNTTRIYTRQTQK 203


>gi|33594003|ref|NP_881647.1| site-specific tyrosine recombinase XerC [Bordetella pertussis
           Tohama I]
 gi|33564077|emb|CAE43345.1| putative integrase/recombinase [Bordetella pertussis Tohama I]
          Length = 326

 Score = 92.4 bits (228), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 38/279 (13%), Positives = 81/279 (29%), Gaps = 39/279 (13%)

Query: 85  GSLAVNSRISFESYFDQIIRK-----SGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
              + ++   +     Q+ ++                +H  + + ++   P S  + L +
Sbjct: 25  RRYSAHTLDGYTRDLRQLAQQAAAAGLPLERVANGHIRHFVARLHAQGLGPRSLARALAA 84

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-------SEGSQP 192
            R  ++W      +  NP   V  PK      +  + E  Q                 + 
Sbjct: 85  WRGFYQWWAPAAGLPGNPATGVRAPKAPRGLPKALSVEQTQVLLDHAPARLATEPAALRD 144

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHL------------QNNIFSIKTQKTGTIITVEL--- 237
              FE L  SGLR ++     +++             +++   I   K G   +V +   
Sbjct: 145 HAMFELLYSSGLRLAELVSLDLRYERTPEYESRSWLNRDDAEVIVVGKGGKRRSVPVGQS 204

Query: 238 -PDGFMKLLAMTP---------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--S 285
                 K L   P               F+    +++      +     A  AG+     
Sbjct: 205 ALAALDKWLQARPQLAAAGAGAQDAAALFVGARGRRIAPRVVQLQLARLAQAAGLPAHVH 264

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            H +R   A+    +      +    G   +   + YT+
Sbjct: 265 PHVLRHSFASHVLQSAQDLRAVQEMLGHANISTTQVYTR 303


>gi|329964312|ref|ZP_08301393.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
 gi|328525361|gb|EGF52409.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
          Length = 410

 Score = 92.4 bits (228), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 55/323 (17%), Positives = 114/323 (35%), Gaps = 40/323 (12%)

Query: 43  FIPAYMS-ALTGST-PKREYINSPRKKPTTLKWLISEYRKSAHW------GSLAVNSRIS 94
           F   Y    L G     R  +N  + K  T K L + +++             A  +   
Sbjct: 81  FYQIYQDLELEGKIISARAIVNRYQGKDETFKTLYNVFKEHNDNCRKLIGTDYADITVRR 140

Query: 95  FESYFDQIIR------KSGDFDYRKITTKHIRSGVESRKH----TPSSAIQFLTSMRVLF 144
           +++    ++       K  D   R+++ + +R      K       ++ I+++   + + 
Sbjct: 141 YDNCLKYLMELVKRDYKVDDMLLREVSGELVRKFDLYLKTEKHCAQNTVIRYMKCFKKVI 200

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF---KSFWSEGSQPRLAFEFLLY 201
             A+  E++  NP   ++  + +    +  ++ ++ +    +         R  F F +Y
Sbjct: 201 NLAIANEWLTKNPFAGIKFHEVEVNK-QFLSQAEINRIWQKEFRIERLELVRDVFIFCVY 259

Query: 202 SGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVEL---PDGFMKLLAMTP--IG 251
           +GL   D      +H+  +           +KT  I  + L   P   ++     P  + 
Sbjct: 260 TGLAFIDVYNLRPEHVLEDNNGNLWIVKPREKTNNICNIPLLSIPKQILEKYKDNPYCMD 319

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG-ATAHELM 308
           K T       QKMN+     + K  A   G+ K  + H  R   A++ A A   +   + 
Sbjct: 320 KGTLLPVPCNQKMNS-----YLKEIADLCGIKKNLTTHTARHSFASVIALANNVSLPNVA 374

Query: 309 ATYGWKTVDQAETYTKGADRIRL 331
              G  +    + Y K  D+  L
Sbjct: 375 KMLGHSSTRMTQHYAKVLDQTIL 397


>gi|257879448|ref|ZP_05659101.1| site-specific recombinase [Enterococcus faecium 1,230,933]
 gi|323142571|ref|ZP_08077387.1| site-specific recombinase, phage integrase family
           [Phascolarctobacterium sp. YIT 12067]
 gi|257813676|gb|EEV42434.1| site-specific recombinase [Enterococcus faecium 1,230,933]
 gi|322413004|gb|EFY03907.1| site-specific recombinase, phage integrase family
           [Phascolarctobacterium sp. YIT 12067]
          Length = 378

 Score = 92.4 bits (228), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 47/300 (15%), Positives = 102/300 (34%), Gaps = 43/300 (14%)

Query: 85  GSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIR---------SGVESRKHTPSSAI 134
             +  ++   + +     I+   G    R IT + I           G++    +  +  
Sbjct: 82  PKVKESTSNKYRNLLSSYILPVFGSKQLRDITHEFIETQCNFFLVSGGLKENGLSSKTVS 141

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP-R 193
             L+ +R + ++A R          S+ + KR+T+ +R  ++ + ++   +         
Sbjct: 142 DILSLIRNVLQFATRNGKAISCDARSI-QIKRQTKEMRVLSRAEQEKLCQYLYSNLDSCN 200

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ------------KTGTIIT----- 234
           +     L++GLR  + C    + +   +    +               KT  ++T     
Sbjct: 201 IGILVCLFTGLRVGEICALRWEDVSFSDYTIHVHQTLQRIQDRTNSEYKTRIVVTTPKSA 260

Query: 235 -----VELPDGFMKLLAM-TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAH 287
                + +P G M +L             N+D+  +        FK     +G+   + H
Sbjct: 261 CSIRTIPVPHGLMTILTAHKASSTGYILTNSDQNPLEPRTMQNHFKKVLKNSGITSANYH 320

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTK-GADRIRLGIKNSRRISSVVDS 345
            +R   AT   + G     L    G  +V+     Y     D  R   +N +R+S ++  
Sbjct: 321 SLRHTFATRCIELGFDVKSLSEILGHASVNITMNRYVHPSMDLKR---ENMQRLSDLLAV 377


>gi|255690723|ref|ZP_05414398.1| putative Na+/H+ antiporter NhaA [Bacteroides finegoldii DSM 17565]
 gi|260623758|gb|EEX46629.1| putative Na+/H+ antiporter NhaA [Bacteroides finegoldii DSM 17565]
          Length = 536

 Score = 92.4 bits (228), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 44/293 (15%), Positives = 90/293 (30%), Gaps = 26/293 (8%)

Query: 58  REYINSPRKKPTTLKWL-ISEYRKSAHWGSLAVNSRISFESYFDQ----IIRKSGDFDYR 112
           +E    P     ++  + I+EY     +   +                 I +++ +    
Sbjct: 226 KELHMLPESGSPSISDIRINEYLNHLAYRRYSHAYIKGRRYILTYFYKIIEKENQEHPLT 285

Query: 113 KITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
                         K   ++  ++L  +RV  ++AV + +   +   ++  PK  +E   
Sbjct: 286 LEDIDKYIEYYTINKVQRNTLKEYLCCIRVYLRYAVEKGWCITDLDKALITPKVYSEENL 345

Query: 173 P--WTKEDMQQFKSFWSE-----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFS 223
           P       +Q+      E      S+    F  L   GLRCS+     +  +        
Sbjct: 346 PSFLPWNKVQKLLQTVKEQTGKSASRDYAIFMLLAMYGLRCSEVANLKISDIDWRKEQVY 405

Query: 224 IKTQKTGTIITVELP--------DGFMKLLAMTPIGKETFFIN-NDKQKMNATQFSIWFK 274
           IK  K      + L             +           FF      + ++ T  +    
Sbjct: 406 IKRAKNCRPQVLPLLHNVGEAIIAYLKQGRPNDIGSDSLFFCTPAPIRPISCTAIASVVY 465

Query: 275 AKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
                + ++   K  H +R   AT   + G T  ++    G K+++    Y K
Sbjct: 466 RYLKSSEMDVRHKGPHCLRHSHATFLINEGQTLKDVGDLLGHKSMEATRIYAK 518


>gi|228471370|ref|ZP_04056171.1| integrase [Porphyromonas uenonis 60-3]
 gi|228306871|gb|EEK15984.1| integrase [Porphyromonas uenonis 60-3]
          Length = 388

 Score = 92.4 bits (228), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 57/304 (18%), Positives = 103/304 (33%), Gaps = 30/304 (9%)

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISF--ESYFDQI--IRKSGDFDYRK 113
           + Y+    + PTTL  L +E  K+    S A   R +   +   +     R   D     
Sbjct: 91  KNYLQYVGQTPTTLLALSAEELKAQRECSSAGTYRNNRYADRLLNSFVRSRSEQDVPLSA 150

Query: 114 ITTKHIRSGV---ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170
           +T +         +   + P++    L  +  L   AV Q  +  NP   V+  +     
Sbjct: 151 LTIEFFEDYRFYLKRAGYAPATINGHLCWLSRLMYRAVSQGTIRFNPFEEVKY-EVVERK 209

Query: 171 IRPWTKEDMQQFKSF---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----IF 222
            R  +K D+ +  +F          R  F F +++GL   D        ++ N       
Sbjct: 210 PRFLSKGDVSKLLAFPFQDKGAELSRRMFLFSVFTGLAFVDLQGLRASQIETNSEGKRYI 269

Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW-----FKAKA 277
               QKT     + L     ++LA+    K     +    K+     S W      KA  
Sbjct: 270 RKARQKTEVESLIPLHPIAEQILALYTKAK-----SRGDYKIFPDTMSDWKLLRHLKAVG 324

Query: 278 TKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335
              G+    + H  R    T++ +AG     +    G  ++   + Y +  D+     K+
Sbjct: 325 LACGIRTPLTWHCARHTFGTLTLEAGIPIESIAKMMGHSSIASTQIYAQVTDQK--IAKD 382

Query: 336 SRRI 339
             R+
Sbjct: 383 MERL 386


>gi|227519604|ref|ZP_03949653.1| integrase family protein [Enterococcus faecalis TX0104]
 gi|227072954|gb|EEI10917.1| integrase family protein [Enterococcus faecalis TX0104]
 gi|315168777|gb|EFU12794.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX1341]
          Length = 376

 Score = 92.4 bits (228), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 58/373 (15%), Positives = 122/373 (32%), Gaps = 56/373 (15%)

Query: 18  HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISE 77
           +GK  Y  R     + R       +       A   +      +NS          L+ E
Sbjct: 9   NGKWRYRIRYKENGKFR---EVSKSGFRTKRDAQAAANELERKLNSGLVVQHNKDILVQE 65

Query: 78  YRKSAHWGSLAV-----NSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR--KHT 129
           Y  S  W  L       ++           I+ +   +   +I      + V       +
Sbjct: 66  YLSS--WIKLKEKQVKKSTLAKLNRAIRLHILPQFAYYKITEIRRIDCINWVNEMCTHLS 123

Query: 130 PSSAIQFLTSMRVLFKWAV-RQEYVAINPCLSVERPKRKTE--GIRPWTKEDMQQFK--S 184
             SA  + ++     + AV   + +  NP  +++ PK +     I+ + K ++Q     +
Sbjct: 124 IESAKSYCSTFNSALEDAVNDFKLIDSNPMKNIKYPKTEKRKTAIQFFEKRELQNLLVTA 183

Query: 185 FWSEGSQPRLAFE------FLLYSGLRCSDSCRAGVQHLQNNIFS-------------IK 225
              +G++P + ++       L  +GLR  ++     + +  +  +             I 
Sbjct: 184 ESYKGTKPFINYQYYVLTFLLARTGLRLGEALALKWEDVTEDKLTVSKTLYRENNQNFIT 243

Query: 226 TQKTGTIITVELPD----GFMKLLAMTPIG-----------KETFFINNDKQKMNATQFS 270
           T KT +     + D      +K   +  I            KE  F ++    +    + 
Sbjct: 244 TPKTISSYRTIILDKKCIELLKSFKIKKIEHSLKSNAFILNKEFVFTDSKGDFLKQCNYR 303

Query: 271 IWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADR 328
            +F    T A V K S H +R   A    ++G+    +    G  T++     Y   +  
Sbjct: 304 TYFTTICTLADVPKLSPHALRHSHAVHLLESGSNIKFVSERLGHHTINMTANVYLHVS-- 361

Query: 329 IRLGIKNSRRISS 341
            ++  ++  R  +
Sbjct: 362 KKMETESISRYEN 374


>gi|328541944|ref|YP_004302053.1| Integrase family protein [Polymorphum gilvum SL003B-26A1]
 gi|326411694|gb|ADZ68757.1| Integrase family protein [Polymorphum gilvum SL003B-26A1]
          Length = 428

 Score = 92.4 bits (228), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 40/211 (18%), Positives = 79/211 (37%), Gaps = 11/211 (5%)

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KSFWSE 188
           A + ++++  +F+ AVR   +  NP   V +    T   R  ++ ++++      +  +E
Sbjct: 187 AGRTMSTLHSIFEHAVRLGKIESNPAKGVRKI-ASTPRDRRLSRTEIEKLGKAMLAAEAE 245

Query: 189 GSQP--RLAFEFLLYSGLRCSDSCRAG--VQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
           G  P    A  FLL +G R  +           +         K+G    V +    + L
Sbjct: 246 GEHPTGLAAIRFLLLTGFRRMEGLGLERAWLDEEEGAIRFPDTKSGAQTRV-IGGSAVDL 304

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGAT 303
           L   P  +  FF   D    +       F     + G+ + + H +R   A+++AD G +
Sbjct: 305 LLAQPRTRSPFFFPADWGDGHFIGVVRVFDRVCARVGLADVTLHALRHTFASVAADLGFS 364

Query: 304 AHELMATYGWKTVDQAETYTKGADRIRLGIK 334
              + A  G       + Y    + ++L   
Sbjct: 365 ELTIAALLGHAARGVTQRYIHIDEALKLAAD 395


>gi|304382841|ref|ZP_07365324.1| integrase [Prevotella marshii DSM 16973]
 gi|304336026|gb|EFM02273.1| integrase [Prevotella marshii DSM 16973]
          Length = 392

 Score = 92.4 bits (228), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 53/300 (17%), Positives = 107/300 (35%), Gaps = 40/300 (13%)

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSR--------ISFESYFDQIIRKSGD- 108
           ++++      PTTL  L      S    S+  ++R         S+    +  +   GD 
Sbjct: 91  KKHLQGVGANPTTLLAL------SREVLSIVQSTRTLSTYQTCRSYHRQLELFVESKGDS 144

Query: 109 -FDYRKITTKHIRSGVESRKHTPSSAIQFLTSM----RVLFKWAVRQEYVAINPCLSVER 163
                 +T +         K    +      ++    R++++ AV Q+ +  NP    + 
Sbjct: 145 DIPLTTLTMEFFEDYRIHFKRKGYALSSTKQNLFWLSRLMYR-AVSQQTIRYNPFEEAKY 203

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHL--- 217
            + + + IR  +K D+ +  +   +  Q    R  F F +++GL  +D  +     +   
Sbjct: 204 ERVERK-IRCLSKTDIARLLAMPLQNEQAEFVRRLFLFSVFTGLAFADVSKLRYCDIQTN 262

Query: 218 QNNIFSIKT--QKTGTIITVELPDGFMKLLAMTP----IGKETFFINNDKQKMNATQFSI 271
              I  I+   +KTG      L     ++L++ P          F  +    M+  Q  +
Sbjct: 263 NAGIRYIRQDRKKTGVESITPLHPIAEQILSLYPLKDKKEDSPIFATS----MSRIQIGM 318

Query: 272 WFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             KA     G+    S H  R    T++ +AG     +    G  ++   + Y +  D  
Sbjct: 319 HLKAIGLACGIRQPLSFHVGRHSFGTLTLEAGVPIESIAKMMGHASIASTQIYAQITDSK 378


>gi|15831067|ref|NP_309840.1| integrase [Escherichia coli O157:H7 str. Sakai]
 gi|195939806|ref|ZP_03085188.1| integrase [Escherichia coli O157:H7 str. EC4024]
 gi|254792778|ref|YP_003077615.1| integrase [Escherichia coli O157:H7 str. TW14359]
 gi|261226516|ref|ZP_05940797.1| integrase [Escherichia coli O157:H7 str. FRIK2000]
 gi|261257947|ref|ZP_05950480.1| integrase [Escherichia coli O157:H7 str. FRIK966]
 gi|13361278|dbj|BAB35236.1| integrase [Escherichia coli O157:H7 str. Sakai]
 gi|254592178|gb|ACT71539.1| integrase [Escherichia coli O157:H7 str. TW14359]
 gi|320189780|gb|EFW64435.1| Phage integrase [Escherichia coli O157:H7 str. EC1212]
 gi|320637146|gb|EFX06972.1| integrase [Escherichia coli O157:H7 str. G5101]
 gi|320642512|gb|EFX11760.1| integrase [Escherichia coli O157:H- str. 493-89]
 gi|320647865|gb|EFX16573.1| integrase [Escherichia coli O157:H- str. H 2687]
 gi|320663960|gb|EFX31147.1| integrase [Escherichia coli O157:H7 str. LSU-61]
 gi|323153323|gb|EFZ39581.1| integrase [Escherichia coli EPECa14]
 gi|326341095|gb|EGD64888.1| Phage integrase [Escherichia coli O157:H7 str. 1125]
 gi|326347857|gb|EGD71572.1| Phage integrase [Escherichia coli O157:H7 str. 1044]
          Length = 230

 Score = 92.4 bits (228), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 37/216 (17%), Positives = 68/216 (31%), Gaps = 19/216 (8%)

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
              SA    +++  +F+ A+ + +VA NP  +    K +    R    E +  + +    
Sbjct: 10  KAVSARVIRSTLVDVFRGAIAEGHVATNPVTTTRAAKSEVRRSRLTANEYVAIYHAAEHL 69

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP---------- 238
               RL+ +  + +G R  D CR     + +    I   KTG  I + L           
Sbjct: 70  PIWLRLSMDLAVVTGQRVGDLCRMKWSDINDGHLHIGQSKTGAKIAIPLALTIDALDISL 129

Query: 239 -DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NKSAHGVRKF 292
            D   K         ET   +   + ++    S +       +G+       + H +R  
Sbjct: 130 VDTLQK--CREASSSETIIASTYHEPLSPATVSRYLTKARNASGISFDGDPPTFHELR-S 186

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
            +                 G K+   A  Y     R
Sbjct: 187 LSARLYRNQIGYKFAQRLLGHKSDSMAAHYRDSRGR 222


>gi|262172770|ref|ZP_06040448.1| integrase [Vibrio mimicus MB-451]
 gi|261893846|gb|EEY39832.1| integrase [Vibrio mimicus MB-451]
          Length = 391

 Score = 92.4 bits (228), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 69/220 (31%), Gaps = 17/220 (7%)

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             + ++   +   +R     A R+  +  NP   V   K KT      T +++       
Sbjct: 162 ALSRNTQSSYFNKVRAAINEAHREGIIRDNPLSQVTSIKAKTTKRVYLTLDEVNTLAHTE 221

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN----NIFSIKTQK-----TGTIITVEL 237
                 + AF F   +G+R  D  R     ++             K       ++  ++L
Sbjct: 222 CRYPVLKRAFLFSCATGMRWCDIHRLTWSEIETFNNHKRIIFDQVKLSHGDAKSLQYLDL 281

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW-FKAKATKAGVNK--SAHGVRKFSA 294
           P     LL       E  F     + +  + +        +  AG++K  + H  R   A
Sbjct: 282 PKFAESLLGPVKAAHERVF-----KGLKYSSYMNVELLRWSLAAGISKHVTFHSGRHTFA 336

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIK 334
            I    G   + +    G   +   E Y    ++ R+   
Sbjct: 337 VIQLSRGVDIYSVSRLLGHSELKTTEIYADIIEQRRMEAM 376


>gi|309777226|ref|ZP_07672189.1| site-specific recombinase, phage integrase family
           [Erysipelotrichaceae bacterium 3_1_53]
 gi|308915096|gb|EFP60873.1| site-specific recombinase, phage integrase family
           [Erysipelotrichaceae bacterium 3_1_53]
          Length = 350

 Score = 92.4 bits (228), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 52/292 (17%), Positives = 105/292 (35%), Gaps = 47/292 (16%)

Query: 85  GSLAVNSRISFESY-FDQIIRKSGDFDYRKITTKHIRSGV-------------ESRKHTP 130
             + +N+  ++ SY F  I+   G++   ++TT  I+  +             E +  + 
Sbjct: 39  KEITINTFNNYNSYIFKHILPVLGEYRLTELTTPVIKKYIMDKLTHGRIRITGEEKGLST 98

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
            +  +  T ++     AV +  +  NPC S+  PK+    +    +E+ ++ +S      
Sbjct: 99  KTVKEHYTLLKKALDKAVEEGEMYYNPCHSISFPKQIKPEVHALEQEEQEKLESHIHARF 158

Query: 191 QP--RLAFEFLLYSGLRCSDSCRAGVQHLQNN--------------------IFSIKTQK 228
           +P  +L  +  LY+GLR  + C   ++ +                          +   K
Sbjct: 159 EPNSKLTAKIALYAGLRNGEVCALQIKDIDFENSMISVSKTLYRTKTASGKTEIMVSKTK 218

Query: 229 TGTIITVELP----DGFMKLLAMTPIG-----KETFFINNDKQKMNATQFSIWFKAKATK 279
                 V +     D     +A  P       ++  FIN   + +   +    FK    +
Sbjct: 219 NKRQRFVPITKGLMDDLKTYIATMPEEMRNNPEQYVFINQRGKPLEPKRLLCHFKELLKE 278

Query: 280 AGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADRI 329
           AG+ +   H +R   AT   + G     +    G  T+   A+ YT   +R 
Sbjct: 279 AGLQDIKFHNLRHTFATRCLECGIDMKIVSKVLGHSTIQITADLYTHVTNRA 330


>gi|294085404|ref|YP_003552164.1| phage integrase family protein [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292664979|gb|ADE40080.1| phage integrase family protein [Candidatus Puniceispirillum marinum
           IMCC1322]
          Length = 299

 Score = 92.4 bits (228), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 38/278 (13%), Positives = 89/278 (32%), Gaps = 17/278 (6%)

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122
           +P  +   L WL  E R   +           + SY      K      R +  +   + 
Sbjct: 3   TPAHRAAWLAWLAEEKRYGRNTIDAYETDLDDYTSYLATQPDKLTSSPNRTVF-RGWIAS 61

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           +  R    ++  + ++++R   ++A RQ  + +     +  P+      +  + +D Q  
Sbjct: 62  MSGRDLARTTIARRVSALRSFLRFASRQNLLDVPDLSWLRAPRPPRTVPKSLSVDDAQAL 121

Query: 183 KSFWSEG-------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
            +            ++       L  +GLR S++     Q      +     K   +  V
Sbjct: 122 LAAIFARRGDDWIKARDFAVLMLLYGAGLRISEALSLRRQDAPLGDWLSIMGKGNKMRDV 181

Query: 236 ELP-------DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286
            +        D ++ L  +     +  F+++    + A       ++   +  +    + 
Sbjct: 182 PVLRAAAQAVDEYIDLCPLALDSDKPLFVSSRGGALGARAVQRLVESLRVELDLPAHVTP 241

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           H +R   AT     G     +    G  ++   + YT 
Sbjct: 242 HALRHAFATHLLGNGGDLRAIQQLLGHVSLATTQLYTH 279


>gi|251764782|sp|Q38067|INTG_BPPF1 RecName: Full=Putative integrase
 gi|187940170|gb|ACD39300.1| phage integrase family protein [Pseudomonas aeruginosa]
          Length = 333

 Score = 92.4 bits (228), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 40/325 (12%), Positives = 87/325 (26%), Gaps = 35/325 (10%)

Query: 15  RTRHGKIIY---YFRKGH-GRRIRLPYPHESTFIPAYMS---ALTGSTPKREYINSPRKK 67
             R     +   ++  G  GRRIR       +    Y     A+ G T +          
Sbjct: 2   TVRKDGKTWTADFYENGRSGRRIRKKGFATKSAAIRYEQDFFAVKGETGRPLDDR----- 56

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR- 126
              L  L+  +          +       +  + + ++ G+    +  +       + R 
Sbjct: 57  ---LSDLVKVWY---DLHGCTLKDGKQRLARCEALAKRLGNPLAFEFDSLAWARYRQRRL 110

Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
            +  P +       +  +F   +R   +   NP   V + K     +   + + + +   
Sbjct: 111 TEVKPETVNHEQRYLSAVFSELIRLGSWHKENPLGKVRQIKTDQVELTFLSLDQVARLLE 170

Query: 185 FWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
                +           L +G R  ++       +          K     +V +PD   
Sbjct: 171 ECKASTNNHTYPVALLCLATGARWEEAESLTRGAVHGGKVHYHRIKNRQSRSVPIPDELE 230

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISAD 299
           +L+         F +               F+    + G     +  H +R   A+    
Sbjct: 231 RLI---------FKVGMPGSGRLFMSCRAAFRCAYQRCGFQTPGQMTHILRHTFASHYMM 281

Query: 300 AGATAHELMATYGWKTVDQAETYTK 324
            G     L    G  ++     Y  
Sbjct: 282 GGGDILTLQRILGHSSITMTMRYAH 306


>gi|167648116|ref|YP_001685779.1| integrase family protein [Caulobacter sp. K31]
 gi|167350546|gb|ABZ73281.1| integrase family protein [Caulobacter sp. K31]
          Length = 432

 Score = 92.4 bits (228), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 45/311 (14%), Positives = 94/311 (30%), Gaps = 39/311 (12%)

Query: 70  TLKWLISEYRKSAHWGSL--------AVNS-RISFESYFDQIIRKSGDFDYRKITTKHIR 120
           T++ L   Y + A  G +          ++ +         I    G    +++T   I 
Sbjct: 95  TVRELCERYMEDAEIGLVPGKRRMPKKPSTLQADRSRISSHITPLLGTRLVKEVTRADIH 154

Query: 121 SGVESRKHTPS-------------------SAIQFLTSMRVLFKWAVRQEYVAINPCLSV 161
             +       +                   +A + L  +  +F +A R   +  NP   +
Sbjct: 155 QFMRDVALGKARRDRKTKLRGRSIVRGGLGTAGRTLGLLGGIFTYAQRIGVIENNPVRGI 214

Query: 162 ERPKRKTEGIRPWTKEDM----QQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQ 215
            +P   +   R  +  +     +  +    EG   +     + L  +G R  +  +   +
Sbjct: 215 PKPAVNSR-YRRLSAAEYRTLGETLREAEQEGHNEKALTIIKLLALTGCRRGEIEKLRWE 273

Query: 216 HLQN--NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF 273
            + +    F +   K G  I    P+ F  L    P     +    D            +
Sbjct: 274 EVDDAGRCFRLADTKEGRSIRPIGPEVFALLNHRRPADARGYVFEGDVAGKAFDGVPKVW 333

Query: 274 KAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
                K  ++ + H +R   A+++ D G T   + A  G         Y    D     I
Sbjct: 334 GKTIRKQLMDVTPHVLRHSFASMANDLGFTEATIAALLGHAAGTTTSRYVHNLDTAL--I 391

Query: 334 KNSRRISSVVD 344
             + ++S  + 
Sbjct: 392 SAAEKVSGHIA 402


>gi|189500094|ref|YP_001959564.1| putative transcriptional regulator, TetR family [Chlorobium
           phaeobacteroides BS1]
 gi|189495535|gb|ACE04083.1| putative transcriptional regulator, TetR family [Chlorobium
           phaeobacteroides BS1]
          Length = 408

 Score = 92.4 bits (228), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 40/304 (13%), Positives = 90/304 (29%), Gaps = 58/304 (19%)

Query: 83  HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES----RKHTPSSAIQFLT 138
                +  +  S++++  +          + +    ++  + S    R+ + S+  Q   
Sbjct: 104 RLRHRSYRTEQSYKAWVRRFGAFLEHKSPQAVEQSDLQRFLSSLAVERRVSASTQNQAFN 163

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEF 198
           ++  LF+  + ++        +  R  R  +     ++E+++      +E +   L    
Sbjct: 164 ALLFLFRHVLDKKVSG---MEATVRSNRPRKLPVVLSREEVRSILEIMNEVTW--LMASL 218

Query: 199 LLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLA---------- 246
           +   GLR  +  +  ++ +       ++++ K         P    + L           
Sbjct: 219 IYGGGLRIDECLKLRIKDIDFDRGFLTVRSGKGNKDRQTLFPKNLAEPLRNHLSEIRNIH 278

Query: 247 -----------------------------------MTPIGKETFFINNDKQKMNATQFSI 271
                                                 +  +       +  M  T    
Sbjct: 279 EEDRRNGIEGVSMPGALAYKYPNAGKEWGWFWVFPSANLSADPVTNTIRRHHMYPTTVQK 338

Query: 272 WFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            FK    KAGV K  S H +R   AT   +AG     +    G   +     YT  A + 
Sbjct: 339 AFKQAREKAGVVKQASVHTLRHSFATHLLEAGYDIRTVQELLGHANLQTTMIYTHVAKKN 398

Query: 330 RLGI 333
            LG+
Sbjct: 399 MLGV 402


>gi|221632578|ref|YP_002521799.1| putative integrase [Thermomicrobium roseum DSM 5159]
 gi|221156118|gb|ACM05245.1| putative integrase [Thermomicrobium roseum DSM 5159]
          Length = 359

 Score = 92.4 bits (228), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 47/323 (14%), Positives = 96/323 (29%), Gaps = 37/323 (11%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDF 109
           L     K     +P     T++ L   +  +         +   +  + +  +    G  
Sbjct: 37  LAELERKLAIDQAPPVGRVTVRELCERWLATER-KRWKPKTYYDYRWHLEHHVYPVLGRV 95

Query: 110 DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
              K+T   ++   +S      SA      +   F   +R  ++  NPC  V  P  +  
Sbjct: 96  QLSKLTPDRLQRFFDSLSG--RSANLTFRLLHRCFVVGIRWGFLGQNPCDRVVPPAYQAP 153

Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLAFE-FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
            I     + + +   +  E   P        L  GLR  +        +      +   +
Sbjct: 154 PIELPDADALARLFRYCLESDDPYAGLVGLSLLCGLRRGEITALRWSDIDLQTGQLSVVR 213

Query: 229 TGTII----------------TVELPDGFMKLLAMTPI--------------GKETFFIN 258
           +G  I                T+ + +  ++LL                        F  
Sbjct: 214 SGQWIAGRWVETEPKTRAGRRTIYVGEQGIRLLRRQKALVAQLKLQAGPAWQEHGLVFPG 273

Query: 259 NDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVD 317
            + Q ++ ++ +   +     +GV     H +R  SA+++  AG    E+    G   V 
Sbjct: 274 PNGQPLSPSRVAAAVQRICKASGVPPLRHHSLRHASASLALLAGVPLPEVSRQLGHANVS 333

Query: 318 -QAETYTKGADRIRLGIKNSRRI 339
             A  Y+      R   +   R+
Sbjct: 334 ITARVYSHCISDGRRVTEAIERV 356


>gi|164633081|gb|ABY64756.1| IntI1 [Klebsiella pneumoniae]
          Length = 317

 Score = 92.4 bits (228), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 41/306 (13%), Positives = 92/306 (30%), Gaps = 62/306 (20%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129
           ++ + R+   +   ++ +  ++  +    IR  G      + +  + + +      RK +
Sbjct: 16  VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75

Query: 130 PSSAIQFLTSMRVLFK--WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            S+  Q L ++   +         ++       + RP+         T +++ +   F  
Sbjct: 76  VSTHRQALAALLFFYGKVLCTDLPWLQ-----EIGRPRPSRRLPVVLTPDEVVRILGFL- 129

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
           EG   RL  + L  +G+R S+  +  V+     +    ++  K      + LP+     L
Sbjct: 130 EGEH-RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSL 188

Query: 246 AMTPIGKETFFINN---------------------------------------------D 260
                    +++ +                                              
Sbjct: 189 REQLSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVR 248

Query: 261 KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           +  M    F   FK    +AG+ K  + H +R   AT    +G     +    G   V  
Sbjct: 249 RHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVST 308

Query: 319 AETYTK 324
              Y  
Sbjct: 309 TMIYRH 314


>gi|58584989|ref|YP_198562.1| site-specific recombinase XerD [Wolbachia endosymbiont strain TRS
           of Brugia malayi]
 gi|58419305|gb|AAW71320.1| Site-specific recombinase XerD [Wolbachia endosymbiont strain TRS
           of Brugia malayi]
          Length = 328

 Score = 92.4 bits (228), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 48/300 (16%), Positives = 104/300 (34%), Gaps = 48/300 (16%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR---KSGDFDYRKIT---TKHIRSGVE 124
           +  L+SE        S   N+  S+ S   Q+     KSG             +++S   
Sbjct: 19  IDALVSE-------RSATQNTLESYRSDLHQLEDFLLKSGTTLVGASKTNIKDYVKSLCT 71

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC----LSVERPKRKTEGIRPWTKED-- 178
            +K+  SS  + +++M+  +K       +  NP       ++ PK      +  + ++  
Sbjct: 72  QKKYKSSSISRKISAMKNFYKCLFNDGIIDSNPAPANDDELKNPKVFRPLPKYLSVKEML 131

Query: 179 --MQQFKSFWSEGSQP----RLA--FEFLLYSGLRCSDSCRAGVQHL-------QNNIFS 223
             +   +   +E ++     RL    + L  SG+R S+     +  +           + 
Sbjct: 132 LLIDTVRKSANEPNKEINSRRLCAILDILYSSGMRISELISMKLCEVSHLLNSSDKECYI 191

Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI-----------NNDKQKMNATQFSIW 272
           I   K+     +   +  ++ L    + ++               N   + +   +    
Sbjct: 192 IIKGKSSKERQILFNEQALQSLRNYLLARDNLISDRKESDWLFPGNKPNKPITRQRIGQL 251

Query: 273 FKAKATKAGVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            K  A K  +++   S H +R   AT   D+GA+   +    G   +   + YT  A++ 
Sbjct: 252 VKELAKKCNIDENKISPHVIRHSFATHLLDSGASIMLIQKILGHTNLSTTQIYTHIANKK 311


>gi|306823936|ref|ZP_07457310.1| phage integrase [Bifidobacterium dentium ATCC 27679]
 gi|309802320|ref|ZP_07696427.1| site-specific recombinase, phage integrase family [Bifidobacterium
           dentium JCVIHMP022]
 gi|304552934|gb|EFM40847.1| phage integrase [Bifidobacterium dentium ATCC 27679]
 gi|308220920|gb|EFO77225.1| site-specific recombinase, phage integrase family [Bifidobacterium
           dentium JCVIHMP022]
          Length = 367

 Score = 92.4 bits (228), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 51/336 (15%), Positives = 106/336 (31%), Gaps = 39/336 (11%)

Query: 14  ERTRHGKIIYY--FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
             T+ G   Y   +R     +              Y++ +T      +YI+     P   
Sbjct: 6   YNTKSGDKRYRVTYRDPDHSQRTKRGFRRRKDAQDYLARMTTYISDNDYID-----PNAG 60

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFD-----QIIRKSGDFDYRKITTKHIRSGVESR 126
           K L+ ++             +  + +  +      +    G+ +   I    I++ V   
Sbjct: 61  KTLVCQF-ADTWLKGKKNVVKPKYYADLECSWRVHVCNAWGNREIASIRHSEIQTWVSEL 119

Query: 127 KHTPSSAIQFLT--SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
               S+ I       ++ +   AVR   +  NP    + P+++ +     T   +     
Sbjct: 120 AKKRSATITIRAHGVLKGVLDLAVRDGSIRRNPADGCQLPRKQRKERTHLTPAQV--IDL 177

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ---------------KT 229
             + G+   L      + GLR  ++    V+H+      ++ +               KT
Sbjct: 178 AHAAGTYQALILTLG-FCGLRWGEAAALRVKHVDTQNNRLRVRLSWVRSGKKHFEGAPKT 236

Query: 230 GTIITVELPDGFMKLLAMTPIGK---ETFFINNDKQKMNATQFSI--WFKAKATKAGVN- 283
             +  V +PD  M  +     GK   +  F       +         W+      +GV  
Sbjct: 237 WEVRDVPVPDQVMSAIKEQCEGKGPEDLVFTAPSGGHLREQSAKNHGWYARALRDSGVPT 296

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
            + H +R  +A+I+  +GA    +    G K     
Sbjct: 297 LTCHDLRHTAASIAISSGANVKAVQRMLGHKNAAMT 332


>gi|300856340|ref|YP_003781324.1| putative phage-like integrase [Clostridium ljungdahlii DSM 13528]
 gi|300436455|gb|ADK16222.1| predicted phage-related integrase [Clostridium ljungdahlii DSM
           13528]
          Length = 393

 Score = 92.4 bits (228), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 45/319 (14%), Positives = 97/319 (30%), Gaps = 61/319 (19%)

Query: 68  PTTLK-WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG-----DFDYRKITTKHIRS 121
             TLK WL    + S    ++   +   +E  +   I  S            I  +   +
Sbjct: 66  AQTLKSWLFEVVKMSG---NIKPTTFARYEGLYRNYIENSPIGCMSLDKLESIQIQRYYN 122

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS--VERPKRKTEG-----IRPW 174
            +  +  + +        ++    +AV   Y+  NPC    V  PK  ++      I  +
Sbjct: 123 KLFRQGKSSNQINYVNKFLKQFLNYAVDCGYILKNPCSGKKVAIPKENSDKVSERHIPVF 182

Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK------- 225
             ED+ +     +E S+ +    F L +G+R  +        +        I+       
Sbjct: 183 NNEDLTKIIK--AENSKIKYIALFSLSTGMRRGEIIGLKENDIDYKLKEIHIRRTVATTT 240

Query: 226 ----------------TQKTGTIITVELPDGFMKLLAMTPIGK----------------E 253
                            +   +  T+ LP   ++++  +   K                +
Sbjct: 241 IFDDNNKRSKQTIVQEPKSKNSKRTIPLPASLVEIIKASIKIKKSEKLKAGSSYCKDNLD 300

Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYG 312
             F++     +NA      +        + +K  H +R   AT   +       +    G
Sbjct: 301 YIFLSEQGNLINAGNLDKTWSKFLRSLNIPHKKFHALRHTYATKQFENNIPLKTISMLLG 360

Query: 313 WKTVD-QAETYTKGADRIR 330
             +++  A  YT    + +
Sbjct: 361 HSSIEITANIYTHVLKKEK 379


>gi|82750103|ref|YP_415844.1| integrase [Staphylococcus aureus RF122]
 gi|11094395|gb|AAG29618.1| integrase-like protein [Staphylococcus aureus]
 gi|82655634|emb|CAI80030.1| probable integrase [Staphylococcus aureus RF122]
 gi|298693728|gb|ADI96950.1| probable integrase [Staphylococcus aureus subsp. aureus ED133]
          Length = 378

 Score = 92.4 bits (228), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 42/306 (13%), Positives = 96/306 (31%), Gaps = 47/306 (15%)

Query: 84  WGSLAVNSRI--SFESYFD----QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFL 137
           W     N+    +++         I+    D   +KIT  + +  +       S      
Sbjct: 74  WLEQYQNTVRESTYQRVLTLFDTAILEHFQDVPIKKITVPYCQKVINKWNKKYSDIKAIR 133

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRK----TEGIRPWTKEDMQQFKSFWSEGSQPR 193
                +FK+AV  + +  NP    + P++K        + ++ ++++QF +F  +     
Sbjct: 134 IYTSNVFKYAVSLKIIVDNPFAHTKAPRKKEAQQDASTKYYSSDELKQFLTFVEDDPLYY 193

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-----------------GTIITVE 236
             F  L ++G R  +        +     +I   KT                  +  T+ 
Sbjct: 194 AIFRTLAFTGFRRGELMALTWNDIDFTKQTISINKTCARGANYKLVIQEPKTKSSHRTIS 253

Query: 237 LPDGFMKLL---------------AMTPIGKETFFIN-NDKQKMNATQFSIWFKAKATKA 280
           + D    +L                 T    +  F    D + +     +        K 
Sbjct: 254 IDDKTASVLKSWRTHQRVESLKYGHNTSDKHQHVFTTVRDNKPLYPEHCNKALDLICEKN 313

Query: 281 GVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRR 338
              +   HG R    ++  +AG +  E+    G   +    + Y    ++ R   + + +
Sbjct: 314 SFKRIKVHGFRHTHCSLLFEAGLSIQEVQDRLGHGDIKTTMDIYAHVTEKQR--DQVADK 371

Query: 339 ISSVVD 344
            +  ++
Sbjct: 372 FAKYIN 377


>gi|303246559|ref|ZP_07332838.1| integrase family protein [Desulfovibrio fructosovorans JJ]
 gi|302492269|gb|EFL52144.1| integrase family protein [Desulfovibrio fructosovorans JJ]
          Length = 329

 Score = 92.4 bits (228), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 50/335 (14%), Positives = 95/335 (28%), Gaps = 22/335 (6%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPA-YMSALTGSTPKREYINSPRKKPTTLKW 73
           R R        R+            ++ F    +   +     +  +++    + TTL  
Sbjct: 5   RPRGDSWEVRIRRKGWPVT--CRTFDTKFDAEKWAREIESEMDRGVFVSRAEAEATTLAE 62

Query: 74  LISEYRKSAHWGSLAVNSRISFE--SYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
            +  Y        LA   R          +++        R           E+   +P+
Sbjct: 63  ALDRYETDY-LPRLAHPDREILRIKGLKRRVLAARFLAAIRTKDVADFIKEREAEGVSPN 121

Query: 132 SAIQFLTSMRVLFKWA-VRQEYVA-INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
           +    L  +  LF+ A       +  NP   V RPK  +   R     + ++        
Sbjct: 122 TIRLDLALLSRLFEVAASDWGMESLANPVRRVSRPKLPSGRTRRLEAGEEEKLLDACPSP 181

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAM 247
            +     +  L + +R  +        +        +   K G   TV L    + +L  
Sbjct: 182 FKEL--IQLALETAMRREELQTLEWSQVDFNGKTAHLPKTKNGDARTVPLSPIALDILQS 239

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAG-VNKSAHGVRKFSATISADA-GATAH 305
              G+                 +        KAG VN   H +R  + +   +       
Sbjct: 240 IQRGESDRIF-----PFTLDFITKKMGKVVKKAGMVNFHFHDLRHEATSRLFENTDLDVM 294

Query: 306 ELMATYGWKTVDQAETYTK-GADR--IRLGIKNSR 337
           E+    G K++     Y+   A R   RL  K  +
Sbjct: 295 EIKGITGHKSMQMLARYSHLRAGRLAERLAGKGRK 329


>gi|168185276|ref|ZP_02619940.1| tyrosine recombinase XerD [Clostridium botulinum Bf]
 gi|182671679|gb|EDT83640.1| tyrosine recombinase XerD [Clostridium botulinum Bf]
          Length = 212

 Score = 92.4 bits (228), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 76/212 (35%), Gaps = 22/212 (10%)

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE--RPKRKTEGI--RPWTKEDMQQFKS 184
              S  + LTS+  LFK        +IN    V+  R K + +       T++++++   
Sbjct: 2   KAKSINRKLTSINQLFK--------SININYGVKCKRMKEQKQTFLDDVLTRDEIEKMLK 53

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK- 243
                 + +     L  +GLR S+  +  ++ ++     I   K G    + +P    + 
Sbjct: 54  KCGTNIRDKAIIMTLYKTGLRVSELLQLRIRDIRKKSIEI-EGKGGKYRYIIVPKELKEI 112

Query: 244 ----LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATI 296
               L    P+  +  F+  + + M+    +   K  A +A + K     H +R      
Sbjct: 113 WLQYLKVRKPVETDKLFVGTNGE-MHRHNINRIIKKYAVQARITKGKAHPHALRHSFCKA 171

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADR 328
            A        +    G + ++    YT+   +
Sbjct: 172 LAIQNVGIEVIADLAGHEDLNTTRIYTRQTQK 203


>gi|312888616|ref|ZP_07748185.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
 gi|311298930|gb|EFQ76030.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
          Length = 435

 Score = 92.4 bits (228), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 49/287 (17%), Positives = 96/287 (33%), Gaps = 27/287 (9%)

Query: 85  GSLAVNSRISFESYFDQIIR------KSGDFDYRKITTKHIRSGVESRKHTPS----SAI 134
              A  +   +E+  +          +  D   RK+    I       K   +    + +
Sbjct: 125 KDYADGTLERYETSLEHTKAFIQWQYQVNDLYIRKLDHFFIEQYAFWLKTVRNCNHNTTM 184

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ--- 191
           ++L++ + +    V+ +++  +P  + +  KR+     P ++ ++Q   +   E  +   
Sbjct: 185 KYLSNFKKIVLICVKNKWLQGDPFTNFKMSKREV-MREPLSEWELQAMINKDFENDRLNN 243

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVELPDGFMKLLA 246
            R  F F  Y+GL  +D  +     +              QKT T   + L    ++LL 
Sbjct: 244 VRDIFVFSCYTGLAYADVKKLKRSEINMGVDGEQWIFTPRQKTDTPCPIPLLPVALQLLE 303

Query: 247 MTPIGKETFFINNDK--QKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS-ADAG 301
                     IN D+    +   + + + K  A   G+NK  + H  R   AT      G
Sbjct: 304 --KYAHYPKCINQDRVLPVLTNQKMNAYLKEIADLCGINKVLTFHLARHTFATTICLSNG 361

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
                +    G   + Q   Y K           S R   +  +  P
Sbjct: 362 VPMETVSKMLGHTNLKQTLHYAKTLHSKIGADMASLR-QKLAVNPKP 407


>gi|282601462|ref|ZP_05981764.2| putative phage integrase [Subdoligranulum variabile DSM 15176]
 gi|282568976|gb|EFB74511.1| putative phage integrase [Subdoligranulum variabile DSM 15176]
          Length = 385

 Score = 92.4 bits (228), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 49/337 (14%), Positives = 92/337 (27%), Gaps = 41/337 (12%)

Query: 27  KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGS 86
           +   R I +P       I  Y+ A      KR        + T  +     +   A    
Sbjct: 27  RMQARTIDVPKEIPKRSIRQYVYAEAERLEKRFRTGIDESENTKFEAYAEHWLDRAA-KR 85

Query: 87  LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP---------SSAIQFL 137
              ++   +    +      G     KI    +    E  +  P         ++  ++L
Sbjct: 86  YKASTLAGYRKMLELAYPFIGGLPLCKIRPMVLEGFAEELRKRPGRGGKPLSENTVHKYL 145

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE 197
            ++  + + A + + +  NP   VE+P++     + W  E  +  +    E    R+ + 
Sbjct: 146 DAVSAVLQDAAKNDILLYNPAHRVEKPQQ--RIPQQW--EMRKLLQCLLQEPLLYRVFYL 201

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKT---------------QKTGTIITVELPDGFM 242
             L +GLR  + C      L                         K      V +P    
Sbjct: 202 MALSTGLRRGELCALRWCDLHGGNQVKIQHSRSTVVGQGVLESDTKNHRTRIVVMPQIVF 261

Query: 243 KLLAMTPIGKET---------FFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRK 291
             L      +                  + ++   FS   +    + G       H +R 
Sbjct: 262 DDLGELFTEQALENNGADWNGLIFQRKGKPIHPDSFSRHLRHLYDQNGFPEEYHLHTMRH 321

Query: 292 FSATISADAGATAHELMATYGWKTVDQAET-YTKGAD 327
           F AT   + G +        G       E  Y    D
Sbjct: 322 FFATYLLEHGTSKQVAADLLGHADTAFLERTYCHPQD 358


>gi|317152141|ref|YP_004120189.1| integrase family protein [Desulfovibrio aespoeensis Aspo-2]
 gi|316942392|gb|ADU61443.1| integrase family protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 343

 Score = 92.4 bits (228), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 60/326 (18%), Positives = 108/326 (33%), Gaps = 16/326 (4%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEY 78
           GK  YY+ K  GRR+ L   + S      + ++  +  K +      +    L     E+
Sbjct: 16  GKASYYY-KLDGRRLSLSTTNYSE-ACRLLRSIKDAYLKGKIQRITGENDKNLGQFADEF 73

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQF 136
              A   +  V +  +      ++I   G      + T      ++   R   PSS   +
Sbjct: 74  EAWAI-ETQPVKTFKANRLAMRKVIDIEGRTKRLDMLTLKTMDELKRTHRHLKPSSINNY 132

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196
           +   + +   AV   Y+  NP    +   +         KE  +  +S    G   R   
Sbjct: 133 VRHAKAVMNKAVEWGYLKANPFKGAKLLPQAKRVGFIEPKEISEFIRSIEDVGL--RRFV 190

Query: 197 EFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254
              L +G R S+      + +      + I  +K     T  +   F+ +L   P GK  
Sbjct: 191 VACLATGRRRSELVALRWEDIMWDRREYFIAKEKRHLCKTYPMSASFLAVLKSMPRGKGR 250

Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGW 313
            F     +  +A  ++   K    + G    S H +R   +    ++G     L    G 
Sbjct: 251 IF----NRYAHADTYTHEVKRALERGGFGHLSLHDLRHSFSVAMLESGGGMKALQKLLGH 306

Query: 314 KTVD-QAETYTKGADRI-RLGIKNSR 337
                 A+TY    D   +L +   R
Sbjct: 307 SEFRVTADTYADVTDDALQLAVNLVR 332


>gi|255262938|ref|ZP_05342280.1| site-specific recombinase, phage integrase family [Thalassiobium
           sp. R2A62]
 gi|255105273|gb|EET47947.1| site-specific recombinase, phage integrase family [Thalassiobium
           sp. R2A62]
          Length = 391

 Score = 92.4 bits (228), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 55/314 (17%), Positives = 108/314 (34%), Gaps = 32/314 (10%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGS---------LAVNSRISFESYFDQ 101
           ++     R Y  S      TL  ++  YR+    G          L   ++ + E     
Sbjct: 77  VSEEVSARIYGASVPLVEVTLAGVLDRYREYKSTGDADKDRLLFNLIKRTKRACEEVLG- 135

Query: 102 IIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAI-NP 157
                 D D  KIT K + +  +        P+S ++ ++  +    + +R++ +++ NP
Sbjct: 136 -TTAVNDADVAKITRKDVNAVRDYLFGTGLKPNSVVRVISQAQAAMNFCIREDDLSVANP 194

Query: 158 CLSV--ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ 215
              V  +      +   P +K+D+ +  + +         +  L  +G R S+     V+
Sbjct: 195 FQGVIIKGRGATKDDRLPLSKDDIYELNNTFEAPDDVAALWTTLRDTGARLSEIVYLAVE 254

Query: 216 HLQ--NNIFSIKTQ------KT-GTIITVELPDGFMKLLAMTPIGKET--FFINNDKQKM 264
            +   N   +I+        KT  +  T+ L D  ++ L +   GKE          +  
Sbjct: 255 DVDLQNKSVAIRLNSFRGSLKTASSERTIPLSDKALEALQVLRQGKEADEAIFTRYARPR 314

Query: 265 NATQFSIWF--KAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
            A   S     + +       KS H +R        ++G       A  G      A  Y
Sbjct: 315 GADSASQMLMKRLRKVVKDPKKSIHSLRHSMKDALRNSGCPEELGKAILGHSDGSVASRY 374

Query: 323 TKG--ADRIRLGIK 334
             G   D +R  ++
Sbjct: 375 GSGYTLDVLRQAME 388


>gi|210610924|ref|ZP_03288649.1| hypothetical protein CLONEX_00839 [Clostridium nexile DSM 1787]
 gi|210152224|gb|EEA83231.1| hypothetical protein CLONEX_00839 [Clostridium nexile DSM 1787]
          Length = 361

 Score = 92.4 bits (228), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 54/283 (19%), Positives = 93/283 (32%), Gaps = 29/283 (10%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR-- 126
           T +  +  Y +      L  N+ ++ E     +++    D   R I  K I      +  
Sbjct: 57  TFEDFVKAYTRDMK-PKLKHNTWLTKEHILRTKLLPYFKDKKMRDIRPKDIIQWQNEQIS 115

Query: 127 ----KHTPSSAIQFLTS---MRVLFKWAVRQEYVAINPCLSVERP-KRKTEGIRPWTKED 178
               K  P +     T    +  LF  AVR   +  NP +      K K E +  WTKE+
Sbjct: 116 YRDEKGKPYAPTYLKTLQSELSALFNHAVRFYELKSNPVVKAGSLGKGKAEEMLFWTKEE 175

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT--------- 229
             +F     +      AF+ L + GLR  +      Q +  +   I+  K+         
Sbjct: 176 YLKFIEAIKDKPYSYHAFQILYWCGLRVGELLALTSQDIDFDNKVIRITKSYQRLEGEDV 235

Query: 230 -------GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
                   +   V +PD   + L             +    +  +         A KAGV
Sbjct: 236 ITDPKTPKSKRNVSMPDFLCEELKDYIGRLYGILPTDRIFHLTKSFLHHEMTRGAEKAGV 295

Query: 283 NK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            +   H +R    ++    G +A  +    G ++VD    Y  
Sbjct: 296 KRIRIHDLRHSHVSLLISMGFSAVSIGNRVGHESVDITYRYAH 338


>gi|160944661|ref|ZP_02091888.1| hypothetical protein FAEPRAM212_02175 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443845|gb|EDP20849.1| hypothetical protein FAEPRAM212_02175 [Faecalibacterium prausnitzii
           M21/2]
          Length = 411

 Score = 92.4 bits (228), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 54/346 (15%), Positives = 96/346 (27%), Gaps = 71/346 (20%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVE 124
               T+ ++   Y       +L   +R ++   +D+ I    G     +I    +     
Sbjct: 68  AGKATVNFVFDRYMSLK--TNLRQTTRSNYLYMYDRFIRDTFGKKKIAEIRYSDVLQFYN 125

Query: 125 SRKHTPSSAIQFLTSMRVL----FKWAVRQEYVAINPCLSV-----ERPKRKTEGIRPWT 175
                       L S+  L    F+ AVR E V  NP   V     +  ++ T      T
Sbjct: 126 YLLDKQGLQTNTLESVHTLLHPTFQLAVRDEIVRKNPTDGVMAEIKKSSEQTTGVRHALT 185

Query: 176 KEDMQQFKSF---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-------------- 218
               + F                F  LL +G R  ++       L               
Sbjct: 186 IPQQRAFMEHIANHPVFCHWWPLFTVLLGTGCRIGEALGLRWDDLDYERRTISINHSLVY 245

Query: 219 -------NNIFSIKTQKTGTII-TVELPDGFMKLLAMTP------------IGKET--FF 256
                  N++  I   KT   + T+ + D       M              I   T   F
Sbjct: 246 YPVGESRNSVLHISKPKTEAGVRTIPMFDTVKDAFEMLHEEQKESGWNDVEIDGMTGFIF 305

Query: 257 INNDKQKMNATQFSIWFKAKATK--AG---------------VNKSAHGVRKFSATISAD 299
            N      N    +   K       AG                + SAH +R    T   +
Sbjct: 306 CNRFGNVPNPQSVNRAIKRIIADYNAGEEVEAKKQHREAVLLPDFSAHHLRHTFCTRLCE 365

Query: 300 AGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVVD 344
                  + +  G K +    + Y +  +  +   ++  R+++ +D
Sbjct: 366 KETNLKVIQSVMGHKDIQTTMDIYAEATEEKK--QESFERLAATLD 409


>gi|160892657|ref|ZP_02073447.1| hypothetical protein CLOL250_00187 [Clostridium sp. L2-50]
 gi|156865698|gb|EDO59129.1| hypothetical protein CLOL250_00187 [Clostridium sp. L2-50]
          Length = 351

 Score = 92.4 bits (228), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 37/245 (15%), Positives = 83/245 (33%), Gaps = 33/245 (13%)

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
            +  + L+++RV + +  + + +  NP   V+ PK   + I      ++  F      G 
Sbjct: 108 RAIKRKLSALRVFYAYLYKNDRIKSNPAEKVDMPKIHGKTITRLDTNEVADFLDAVEYGD 167

Query: 191 Q---------------PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------ 229
                                  +L +G+R S+     ++ +  N   +K  +       
Sbjct: 168 HLTKHQQAYHAKTKVRDLAILTLMLGTGIRVSECVGIDLKDVDFNNSRVKVTRKGGYESY 227

Query: 230 ---GTIITVELPDGFMKLLAMTPIGK--ETFFINNDKQKMNATQFSIWFKAKATKAGV-- 282
              G  +T  L D   +   + P+       F+++ K++M+     +  K  +   GV  
Sbjct: 228 VYFGDEVTDALTDYLEERKHIEPVSGYENALFLSSQKKRMSVRSVEMLVKKYSE--GVIP 285

Query: 283 --NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRI 339
             + + H +R    T         + +    G   V+   + Y    +  R   +N  ++
Sbjct: 286 LKHITPHKLRSTYGTELYRETGDIYLVADVLGHSDVNTTRKHYADMDEDRRRSARNRVQL 345

Query: 340 SSVVD 344
               D
Sbjct: 346 REKRD 350


>gi|301312093|ref|ZP_07218015.1| putative integrase [Bacteroides sp. 20_3]
 gi|300830195|gb|EFK60843.1| putative integrase [Bacteroides sp. 20_3]
          Length = 508

 Score = 92.4 bits (228), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 57/379 (15%), Positives = 121/379 (31%), Gaps = 62/379 (16%)

Query: 7   LPPFVTKERTRHGKI--IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64
           LP  + ++ T+  K   I   R    +   L +P E  F    +        ++  +N  
Sbjct: 77  LPKAIQQQNTKVNKELNILSMRFSEWQDYMLDHPEEIEFGAEKLRVFVAGEREKLKVNP- 135

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT--------T 116
                 L W  S  + +++    +  ++  + +    + +   +   R            
Sbjct: 136 ------LDWFESAIQGNSNN---SAGTKGKYMTDLKMLRKFVEESKVRATDFSCLNYTFI 186

Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC--LSVERPKRKTEGIRP- 173
           K     +  +  +  + I  +TS +     A +Q  +          E+P+ K EG +  
Sbjct: 187 KKFEKYMLDKGMSMHTIINRITSFKSWLNDAEKQGLINQVETGISKYEKPRNKDEGKQIY 246

Query: 174 WTKEDMQQFKSFWSEG--SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
            T+ ++++ ++    G   + R  F      G R +D        + ++   +   KT  
Sbjct: 247 LTENELKKIQNIELSGNEERARDIFVLQCQLGQRYADIMNLDNAIISDDNIELVQIKTHK 306

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK------- 284
            + + L +    +LA     K  F  N           +   K    KAG++K       
Sbjct: 307 KVIIPLNNIAKNILAKY-NNKLPFIRNEY--------MNQLIKEICRKAGIDKEELITYR 357

Query: 285 ----------------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
                             H  R+   T     G     +M   G  +      Y K    
Sbjct: 358 KGDKQYEEKVQRWQLVGTHTARRTFVTECRKQGLDDASIMRITGHTSTKTMSGYDK---- 413

Query: 329 IRLGIKNSRRISSVVDSDD 347
            R G   ++R + ++ +++
Sbjct: 414 -RTGADVAKRYAEIMSTEN 431


>gi|292656386|ref|YP_003536283.1| XerC/D-like integrase [Haloferax volcanii DS2]
 gi|291371835|gb|ADE04062.1| XerC/D-like integrase [Haloferax volcanii DS2]
          Length = 311

 Score = 92.4 bits (228), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 39/272 (14%), Positives = 91/272 (33%), Gaps = 28/272 (10%)

Query: 83  HWGSLAVNSRISFESYFDQII-RKSGDFDYRKITTKHIRSGVESRKHT---PSSAIQFLT 138
           H    +  +  S+     +    +  D    ++  +H+   + +        +S  ++L 
Sbjct: 26  HATGRSERTLNSYSRILREFFHDQFPDLSPSEVEIRHVEDYLMALTDRGVSQNSKKKYLE 85

Query: 139 SMRVLFKWAVRQ---EYVAINPCLSV--ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
            +   + + +++   E +  NP   V  E P+ + +     T E+  +  +   +  + +
Sbjct: 86  VLSSFYGYTLKRPQFEGITSNPAAVVMEEIPRVRPDRPDCATWENACKLINAIPDP-RDK 144

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTGTIITVELPDGFMKLLAM---- 247
                L  +G R  +        +        ++ +K G    V + D  +  +      
Sbjct: 145 TVTIILAKTGARLLEVLSIEEDDVDLEKGFIRLRERKGGKQTVVPIDDETIYAIKRYQFV 204

Query: 248 -TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV----------NKSAHGVRKFSATI 296
              +     F +N   +++  +     KA A +AGV            + H  R    T+
Sbjct: 205 NADLDSPYLFTSNKGGRLSKERIRREVKAAADRAGVAPKEERRFEKKFTPHTFRTVFTTL 264

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADR 328
               G   + L    G    +  + YT+  DR
Sbjct: 265 MRKQGMKPYILKYIRGDAKTETMDIYTR-VDR 295


>gi|119385228|ref|YP_916284.1| site-specific tyrosine recombinase XerC [Paracoccus denitrificans
           PD1222]
 gi|119374995|gb|ABL70588.1| phage integrase family protein [Paracoccus denitrificans PD1222]
          Length = 312

 Score = 92.4 bits (228), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 40/287 (13%), Positives = 83/287 (28%), Gaps = 28/287 (9%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD-----------YRKITTKHIRSG 122
           +  +  S       + ++  ++++     +   G +              +   +   + 
Sbjct: 18  LERWLASERAARDRSDHTIRAYQADLLAFLTFLGSYHGTPALPATLAGLTQTDMRAFAAA 77

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED---- 178
              R  +  S  + L++ R   +W   +     +  L+   PK      RP   E     
Sbjct: 78  ERGRGLSARSLARRLSATRSFIRWMSDRHGFDASRALASRGPKYTRSLPRPLAPEQAQDV 137

Query: 179 MQQFKSFWSEG---SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
           ++   S   E    ++       L   GLR S++                  K G    V
Sbjct: 138 LEITGSTHPEAWIATRDAAVLTLLWGCGLRISEALGLNGADWPLREALTIRGKGGRERQV 197

Query: 236 ELPDGFMKLLAMTPI-------GKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSA 286
            +     + +A            K   F      +++ T  S   +      G+    + 
Sbjct: 198 PVLPIAREAIADYLRLCPYPLQAKAPLFRGARGGRLSPTLISGAMRQARQVLGLPPTATP 257

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           H +R   AT    AG     +    G  ++   + YT   D   L +
Sbjct: 258 HALRHSFATHLLTAGGDLRTIQELLGHASLSTTQVYTGVDDAHLLAV 304


>gi|313147493|ref|ZP_07809686.1| integrase [Bacteroides fragilis 3_1_12]
 gi|313136260|gb|EFR53620.1| integrase [Bacteroides fragilis 3_1_12]
          Length = 345

 Score = 92.4 bits (228), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 45/275 (16%), Positives = 100/275 (36%), Gaps = 26/275 (9%)

Query: 90  NSRISFE---SYFDQIIRK---SGDFDYRKITTKHIRSGVESRKH----TPSSAIQFLTS 139
            +   +E    Y ++ I+K     D     +    I       K       +S+I  L +
Sbjct: 71  KTVQRYETTTRYLEEFIKKEYQLSDIALNNLEANFISKFDAFLKIEKGCAQNSSITRLKN 130

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLAF 196
           ++ + + A+  +++  +P  +  R K +       T ++++   +         Q R  F
Sbjct: 131 LKKIIRIALENDWIKKDP-FAYYRFKLEETDPEFLTMDEIKIILAKEFTIKRVEQVRDVF 189

Query: 197 EFLLYSGLRCSDSCRAGVQH-LQNN----IFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251
            F +++GL  SD      +H +++N          QKT  +  + +    + +L      
Sbjct: 190 IFGVFTGLAFSDVKDLSPEHLVKDNKGELWIRKNRQKTKIMCNIPVLPVAVSILEKYKNV 249

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS-ADAGATAHELM 308
            E          ++  + + + K  A   G++K  S H  R   AT      G +   + 
Sbjct: 250 AE--CTGKLLPVLSNQRMNSYLKEIADVCGIHKNLSTHTARHSYATSICLANGVSMENVA 307

Query: 309 ATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343
              G       + Y +  D+     K+ ++++S +
Sbjct: 308 KMLGHADTSITKHYARVLDQN--IFKDMQKVNSCL 340


>gi|298375971|ref|ZP_06985927.1| mobilizable transposon, int protein [Bacteroides sp. 3_1_19]
 gi|298267008|gb|EFI08665.1| mobilizable transposon, int protein [Bacteroides sp. 3_1_19]
          Length = 371

 Score = 92.4 bits (228), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 83/230 (36%), Gaps = 15/230 (6%)

Query: 108 DFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP 164
           D D      +++ +  + R+  P   +SA  + ++ R   K   R   +  N    +E+ 
Sbjct: 131 DVDLCNKFREYLLNARQLRRDRPISKNSASGYWSTFRGFLKILFRNRMIKTNVNDFLEKI 190

Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-----QN 219
           + +       + E++        +    + A  F   + LR SD      + +       
Sbjct: 191 EPEDVAKEYLSVEELYCLAETPCKIPVLKTASLFSCLTSLRLSDVLSLCWEEIVDFAAGG 250

Query: 220 NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK 279
                 TQKT T   + + D  +KL+  +P  K   F    K+           K     
Sbjct: 251 KCVHTITQKTKTEDIIPISDEALKLIGYSPEKKGLVF-KGLKRSWTQQP----MKEWIRS 305

Query: 280 AGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           AG+  N + H  R+  AT+ A AG     + +    K++   + Y K  D
Sbjct: 306 AGIIKNITFHSYRRTYATLQAAAGTDIRTIQSNMAHKSITTTQRYMKVVD 355


>gi|283469696|emb|CAQ48907.1| integrase [Staphylococcus aureus subsp. aureus ST398]
          Length = 378

 Score = 92.4 bits (228), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 42/306 (13%), Positives = 97/306 (31%), Gaps = 47/306 (15%)

Query: 84  WGSLAVNSRI--SFESYFD----QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFL 137
           W     N+    +++         I+    D   +KIT  + +  +       S      
Sbjct: 74  WLEQYQNTVRESTYQRVLTLFDTAILEHFQDVPIKKITVPYCQKVINKWNKKYSDIKAIR 133

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRK----TEGIRPWTKEDMQQFKSFWSEGSQPR 193
                +FK+AV  + +  NP    + P++K        + ++ ++++QF +F  +     
Sbjct: 134 IYTSNVFKYAVSLKIIVDNPFAHTKAPRKKEAQQDASTKYYSSDELKQFLTFVEDDPLYY 193

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-----------------GTIITVE 236
             F  L ++G R  +      + +     +I   KT                  +  T+ 
Sbjct: 194 AIFRTLAFTGFRRGELMALTWKDIDFTKQTISINKTCARGANYKLIIQEPKTKSSHRTIS 253

Query: 237 LPDGFMKLL---------------AMTPIGKETFFIN-NDKQKMNATQFSIWFKAKATKA 280
           + D    +L                 T    +  F    D + +     +        K 
Sbjct: 254 IDDKTASVLKSWRTHQRVESLKYGHNTSDKHQHVFTTVRDNKPLYPEHCNKALDLICEKN 313

Query: 281 GVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRR 338
              +   HG R    ++  +AG +  E+    G   +    + Y    ++ R   + + +
Sbjct: 314 SFKRIKVHGFRHTHCSLLFEAGLSIQEVQDRLGHGDIKTTMDIYAHVTEKQR--DQVADK 371

Query: 339 ISSVVD 344
            +  ++
Sbjct: 372 FAKYIN 377


>gi|255009706|ref|ZP_05281832.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           3_1_12]
          Length = 406

 Score = 92.4 bits (228), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 45/275 (16%), Positives = 100/275 (36%), Gaps = 26/275 (9%)

Query: 90  NSRISFE---SYFDQIIRK---SGDFDYRKITTKHIRSGVESRKH----TPSSAIQFLTS 139
            +   +E    Y ++ I+K     D     +    I       K       +S+I  L +
Sbjct: 132 KTVQRYETTTRYLEEFIKKEYQLSDIALNNLEANFISKFDAFLKIEKGCAQNSSITRLKN 191

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLAF 196
           ++ + + A+  +++  +P  +  R K +       T ++++   +         Q R  F
Sbjct: 192 LKKIIRIALENDWIKKDP-FAYYRFKLEETDPEFLTMDEIKIILAKEFTIKRVEQVRDVF 250

Query: 197 EFLLYSGLRCSDSCRAGVQH-LQNN----IFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251
            F +++GL  SD      +H +++N          QKT  +  + +    + +L      
Sbjct: 251 IFGVFTGLAFSDVKDLSPEHLVKDNKGELWIRKNRQKTKIMCNIPVLPVAVSILEKYKNV 310

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS-ADAGATAHELM 308
            E          ++  + + + K  A   G++K  S H  R   AT      G +   + 
Sbjct: 311 AE--CTGKLLPVLSNQRMNSYLKEIADVCGIHKNLSTHTARHSYATSICLANGVSMENVA 368

Query: 309 ATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343
              G       + Y +  D+     K+ ++++S +
Sbjct: 369 KMLGHADTSITKHYARVLDQN--IFKDMQKVNSCL 401


>gi|241992508|gb|ACS73589.1| IntI1 [uncultured bacterium]
          Length = 315

 Score = 92.4 bits (228), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 38/301 (12%), Positives = 87/301 (28%), Gaps = 52/301 (17%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           ++ + R+   +   ++ +  ++  +    IR  G      + +  + + +    +    +
Sbjct: 16  VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75

Query: 134 IQFLTSMRVLFKWAVRQEYVAINP-CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
           +           +   +      P    + RP+         T +++ +   F  EG   
Sbjct: 76  VSTHRQALAALLFFYGKVLCTDLPWPQEIGRPRPSRRLPVVLTPDEVVRILGFL-EGEH- 133

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQH--LQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250
           RL  + L  +G+R S+  +  V+     +    ++  K      + LP+     L     
Sbjct: 134 RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLS 193

Query: 251 GKETFFINN---------------------------------------------DKQKMN 265
               +++ +                                              +  M 
Sbjct: 194 RARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMY 253

Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
              F   FK    +AG+ K  + H +R   AT    +G     +    G   V     YT
Sbjct: 254 DQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 313

Query: 324 K 324
            
Sbjct: 314 H 314


>gi|225378419|ref|ZP_03755640.1| hypothetical protein ROSEINA2194_04087 [Roseburia inulinivorans DSM
           16841]
 gi|225209734|gb|EEG92088.1| hypothetical protein ROSEINA2194_04087 [Roseburia inulinivorans DSM
           16841]
          Length = 328

 Score = 92.4 bits (228), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 34/247 (13%), Positives = 77/247 (31%), Gaps = 12/247 (4%)

Query: 88  AVNSRISFESYFDQIIRKSGD---FDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLF 144
           +  + I +++   Q++   G        +    ++      ++ +  +           F
Sbjct: 67  SEKTLIYYKNTIQQMLDSIGKSVCTIVTEDLRTYLAEYQREKQSSKVTIDNIRRIFSSFF 126

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGL 204
            W   ++Y+  +P   + R K  +     +T E ++  +       +     + L  +G+
Sbjct: 127 AWLEDEDYIIKSPVRRIHRIKAASTIKETYTDEQLESMRDNCD-NPRDLALIDILASTGM 185

Query: 205 RCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDG----FMKLLAMTPIGKETFFIN- 258
           R  +        +  +    I   K      V             L     G E  F++ 
Sbjct: 186 RVGELVLLNRDDISFDERECIVFGKGDKERMVYFDARTKIHLQNYLDSRLDGNEALFVSL 245

Query: 259 -NDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTV 316
                +M      +  +    K  + K   H  R+  AT++ D G    +L    G + +
Sbjct: 246 KAPYNRMKIGGIELRLREIGKKLNIEKVHPHKFRRTLATVAIDKGMPIEQLQKLLGHQRI 305

Query: 317 DQAETYT 323
           D    Y 
Sbjct: 306 DTTLQYA 312


>gi|309806813|ref|ZP_07700802.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 03V1-b]
 gi|308166787|gb|EFO68977.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 03V1-b]
          Length = 373

 Score = 92.4 bits (228), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 65/363 (17%), Positives = 121/363 (33%), Gaps = 36/363 (9%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHE--STFIPAYMSALTGSTPKREYINS-PR 65
             V K  T+ G I Y F+   G  I         S F     +       K E ++S  +
Sbjct: 6   KRVEKYETKKG-IRYRFKTYVGTDINGKKVWATRSGFTSYTEAKYELDKLKLEGVDSFVK 64

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
           +K   +  L +++  +         +  ++E Y   I  K G+    KIT   ++    +
Sbjct: 65  QKQIKVNDLFNQWFDTYQTTVKESTAHKTYEMYKIHIKPKYGNAYVDKITPASLQRFANA 124

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-----PWTKEDMQ 180
                      L  +       +   Y+ +NP   +  PK+ T   R       ++E++ 
Sbjct: 125 LSKKLVKYRTALGILERTLNLGISLGYLKVNPFSKILIPKKTTRKRRDTSINFLSREELD 184

Query: 181 QFKSFW-SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT---------- 229
            F     S      L F  L  +GLR  ++       +  N   I   KT          
Sbjct: 185 TFLKKAESINHLYYLFFLLLASTGLRKGEALALHWSDIDFNTNQISVTKTLAYGLDNKYI 244

Query: 230 -------GTIITVELP----DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF-KAKA 277
                   ++ TV L     +  +K      I  E  F   D   +  ++ + W      
Sbjct: 245 VQTPKSPKSLRTVPLSTHLKEELLKYKDNQKIDTEIIFHTIDGNYLRLSKPTRWLDTIYK 304

Query: 278 TKAGVNK-SAHGVRKFSATISADAG--ATAHELMATYGWKTVDQA-ETYTKGADRIRLGI 333
               + + + HG R   A++  ++       ++ A  G +TV+     YT   ++ +  +
Sbjct: 305 QLPDLKRITTHGFRHTFASLLIESNPYIKPSDVQAILGHETVEMTLNIYTHVTNQSKKKV 364

Query: 334 KNS 336
             S
Sbjct: 365 AQS 367


>gi|217968717|ref|YP_002353951.1| integrase [Thauera sp. MZ1T]
 gi|217506044|gb|ACK53055.1| integrase family protein [Thauera sp. MZ1T]
          Length = 291

 Score = 92.4 bits (228), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 42/286 (14%), Positives = 96/286 (33%), Gaps = 22/286 (7%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI--TTKHIRSGVESRKHTPS 131
           L            L   ++ ++     +  R  G           ++ +  +     +P 
Sbjct: 11  LRQRMLDDMRMRKLTPKTQSAYIRAVCRFTRYLGRAPDSATVEDLRNYQLHLVDTGTSPM 70

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           S    ++ ++  F   +++  +       ++  +         ++E++ +  +  +   +
Sbjct: 71  SLNAAISGLKFFFDITLQRGEL----MARMQPVRLPQRLPVVLSREEVARLIAACN-NLK 125

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLA--- 246
            + A      +GLR S+     V  + +   +++    K        L    ++ L    
Sbjct: 126 HQTALSLAYATGLRASEVVSLKVSDVDSGRMTLRVEQGKGRKDRYAMLSPLLLERLRVWW 185

Query: 247 --MTPIGKET----FFIN-NDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS 297
                 GK       F   N  + ++  Q +   +A A  AG++K  S H +R   AT  
Sbjct: 186 RVARAQGKMLDGGWLFPGLNPIESLSPRQLNRAVQAAALAAGIDKRVSMHTLRHCFATHL 245

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSRRISSV 342
            +       + A  G K +D    YT+ A D +R  +     + S 
Sbjct: 246 LEQKVDIRIIQALLGHKKLDTTVIYTQVATDLLREVVSPLETLQSA 291


>gi|194436564|ref|ZP_03068665.1| site-specific recombinase, phage integrase family [Escherichia coli
           101-1]
 gi|194424596|gb|EDX40582.1| site-specific recombinase, phage integrase family [Escherichia coli
           101-1]
 gi|323973788|gb|EGB68962.1| phage integrase [Escherichia coli TA007]
          Length = 426

 Score = 92.4 bits (228), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 46/317 (14%), Positives = 98/317 (30%), Gaps = 64/317 (20%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK-ITTKHIRSGVESR-- 126
           T+K L  ++        +A  S  ++ +    I+   G+ +    I  + +    +    
Sbjct: 80  TIKELAEKFLALKE-TEVAKTSLNTYRAVIKNILSIIGEKNLASSINKEKLLEVRKELLT 138

Query: 127 --------------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
                           +  + I ++T++  +F++ V   Y+A NP   +   K       
Sbjct: 139 GYQIPKSNYIVTQPGRSAVTVINYMTNLNAVFQFGVDNGYLADNPFKGISPLKESRTIPD 198

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK----- 225
           P ++E+  +         Q +  +   +Y+G+R  + C  G + +   N    I+     
Sbjct: 199 PLSREEFIRLIDAC-RNQQAKNLWCVSVYTGVRPGELCALGWEDIDLKNGTMMIRRNLAK 257

Query: 226 --------TQKTGTIITV--ELPDGFMKLLAMTPIGKETFF------------------- 256
                      T  +I +     D     + +T + KE                      
Sbjct: 258 DRFTVPKTQAGTNRVIHLIKPAIDALRSQMTLTRLSKEHIIDVHLREYGRTEKQKCTFVF 317

Query: 257 -------INNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELM 308
                  + N             + A   +AG+ ++ ++  R   A  S  AGA    + 
Sbjct: 318 QPEVSARVKNYGDHFTVDSIRQMWDAAIKRAGLRHRKSYQSRHTYACWSLTAGANPAFIA 377

Query: 309 ATYGWKTVDQA-ETYTK 324
              G        + Y K
Sbjct: 378 NQMGHADAQMVFQVYGK 394


>gi|161613577|ref|YP_001587542.1| hypothetical protein SPAB_01299 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|161362941|gb|ABX66709.1| hypothetical protein SPAB_01299 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 275

 Score = 92.4 bits (228), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 46/272 (16%), Positives = 89/272 (32%), Gaps = 34/272 (12%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----KHTPSSAIQFLTSM 140
             LA N+     +    +  K G+    ++TT+HI   +ES     K+T + A++  + +
Sbjct: 6   RDLATNTYKICGNQLTTVSEKMGEMILAEVTTQHIAEFLESWIAEGKNTMAGAMR--SVL 63

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF---- 196
             +F+ A+ +  +  NP      P+ K    R      ++ + +  +        F    
Sbjct: 64  SDMFREAIVEGRITTNPVEPTRAPEIKVARERL----QLETYNATRAAAEHMPAWFPLAM 119

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK--------LLAMT 248
           +  L +G R  D        + +N   +   KTG  I + L              +    
Sbjct: 120 DLALVTGQRREDIVNMKFSDVFDNRLYVTQIKTGMKIAIPLSLTLRATGLRLGTVIDRCR 179

Query: 249 PIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNKS-----AHGVRKFSATIS 297
            + +  F I      N+    ++    +  F      +GVN S      H +R   A   
Sbjct: 180 LVSRTDFMISAGIRKNSPTGNIHPDGLTKTFVKARKASGVNFSNNPPTFHEIR-SLAGRL 238

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRI 329
                         G  + +  + Y    D  
Sbjct: 239 YKNEHGEVFAQKLLGHTSANTTKLYLDERDDK 270


>gi|9633585|ref|NP_050999.1| P38 [Acyrthosiphon pisum bacteriophage APSE-1]
 gi|6118033|gb|AAF03981.1|AF157835_38 P38 [Endosymbiont phage APSE-1]
          Length = 390

 Score = 92.4 bits (228), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 48/293 (16%), Positives = 101/293 (34%), Gaps = 34/293 (11%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE-----SRKHTPSSAIQFLTS 139
             L   +     S   ++  +     ++       R G+E     +++ + ++  + L  
Sbjct: 93  TRLKDMTEAKIYSAISKMKNRQEQLRWKSRVNSAKRKGIEIPAYQAKEVSIATKAKHLAL 152

Query: 140 MRVLFKWA-VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEF 198
           ++ + K A    +++  +P   ++ P  + + IR    ++ ++  +   E    R   EF
Sbjct: 153 LKSMMKSAERDWKWIEKSPV--IKVPSAREKRIRWLEPDEAERLINECPEPL--RSTVEF 208

Query: 199 LLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254
            L +GLR S+        +           +  K+G  I V L D    +L       + 
Sbjct: 209 ALATGLRRSNIINLAWSQIDMQRKVAWIEPENSKSGKAIGVALNDTACCILTRQLGNHQK 268

Query: 255 FFI-------------NNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADA 300
           +                N  +KM     + W +A   +AG+ N   H +R   A+    +
Sbjct: 269 WVFVHTMSAKRSDGSQTNSIRKMRVDSNTAW-RAALKRAGIENFRFHDLRHTWASWLIQS 327

Query: 301 GATAHELMATYGWKTVDQAETYTKGADR-----IRLGIKNSRRISSVVDSDDP 348
           G     L    GW++V+    Y   A        +       R +  + +  P
Sbjct: 328 GVPLSVLQEMGGWESVEMVRRYAHLASNHLTEHAKQIDGVFDRFNRKISNHVP 380


>gi|50955666|ref|YP_062954.1| phage-related integrase [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50952148|gb|AAT89849.1| phage-related integrase [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 312

 Score = 92.4 bits (228), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 47/265 (17%), Positives = 89/265 (33%), Gaps = 27/265 (10%)

Query: 85  GSLAVNSRISFE-SYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL 143
           GS+   +   +  ++  ++    G      IT   I + +     + S+ I  L+ +  L
Sbjct: 16  GSVRPATARGYSVAWRLRVQPSLGSAKLSAITPTMIEAAMARWSGSASTKIDALSLLSRL 75

Query: 144 FKWAVRQEYVAINPCLSVERPK---RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200
              A R   V +N  L V RP+    +    R  + E++  F      G   R A   L 
Sbjct: 76  LDAARRGRLVDVNAALDVARPRDEITEDITSRALSMEEVLVFLDLIPAGHYRRFA-AVLA 134

Query: 201 YSGLRCSDSCRAGVQHLQ----------------NNIFSIKTQKTGTIITVELPDGFMKL 244
           ++G+R  +     V+ +                 N    ++  K   +  V L D     
Sbjct: 135 FTGMRAGELTAVRVRDVDFTNRVIIVGRSYSPGRNGELILQGTKGRKLRHVPLIDALQPY 194

Query: 245 LAMTPIGKE---TFFINNDKQKMNATQFSI---WFKAKATKAGVNKSAHGVRKFSATISA 298
                + K      F      ++    F     W   ++     +     +R   AT+  
Sbjct: 195 AKEAAVAKAPDALLFDGILGGRLTGGTFKRAVGWEMIRSVLGRPDFKVKDLRHTFATMML 254

Query: 299 DAGATAHELMATYGWKTVDQAETYT 323
           DAG +A++     G  ++   + YT
Sbjct: 255 DAGVSANDTKDVLGHSSLQVTDIYT 279


>gi|15801939|ref|NP_287960.1| putative integrase fragment [Escherichia coli O157:H7 EDL933]
 gi|13259566|gb|AAK16938.1|AE006457_11 putative integrase fragment [Escherichia coli O157:H7 str. EDL933]
          Length = 233

 Score = 92.4 bits (228), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 37/216 (17%), Positives = 68/216 (31%), Gaps = 19/216 (8%)

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
              SA    +++  +F+ A+ + +VA NP  +    K +    R    E +  + +    
Sbjct: 13  KAVSARVIRSTLVDVFRGAIAEGHVATNPVTTTRAAKSEVRRSRLTANEYVAIYHAAEHL 72

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP---------- 238
               RL+ +  + +G R  D CR     + +    I   KTG  I + L           
Sbjct: 73  PIWLRLSMDLAVVTGQRVGDLCRMKWSDINDGHLHIGQSKTGAKIAIPLALTIDALDISL 132

Query: 239 -DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NKSAHGVRKF 292
            D   K         ET   +   + ++    S +       +G+       + H +R  
Sbjct: 133 VDTLQK--CREASSSETIIASTYHEPLSPATVSRYLTKARNASGISFDGDPPTFHELR-S 189

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
            +                 G K+   A  Y     R
Sbjct: 190 LSARLYRNQIGYKFAQRLLGHKSDSMAAHYRDSRGR 225


>gi|166031463|ref|ZP_02234292.1| hypothetical protein DORFOR_01160 [Dorea formicigenerans ATCC
           27755]
 gi|166028868|gb|EDR47625.1| hypothetical protein DORFOR_01160 [Dorea formicigenerans ATCC
           27755]
          Length = 343

 Score = 92.4 bits (228), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 35/255 (13%), Positives = 74/255 (29%), Gaps = 18/255 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESR-------KHTPSSAIQ 135
            +L   ++  +     ++            +I         E R       K+  S+   
Sbjct: 73  KNLRPETKAQYRDAIMRLTSVIEKPLNKMDEIDIDSYLDWYEKRNVAAGGKKNQASTCNN 132

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195
               +   F W  ++++++ NP  + E  K   + I  +    ++Q +       + R  
Sbjct: 133 ERRYLSAFFTWMRKEKFMSYNPVEATEPMKEVIKPIDYFRPAQIEQLREGC-VSLRDRAI 191

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDG----FMKLLAMTP 249
            E L  +G R  +  +  + H+        I ++K+     + L +       K L    
Sbjct: 192 IEVLRSTGARVGEIPQINIDHVDWATGDIMIMSEKSYKYRLLYLDEVARYHLRKYLDSRT 251

Query: 250 IGKETFFI--NNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHEL 307
              E  F+       ++  +      K            H +RK       D G     +
Sbjct: 252 DDNEALFVWDKAPYNRLKKSGIRNAMKEVGKNMDCKVYPHKLRKTLGVNLKDKGTDIGII 311

Query: 308 MATYGWKTVDQAETY 322
               G         Y
Sbjct: 312 QEVMGHANPTVTSRY 326


>gi|13445488|gb|AAK26251.1|AF263519_1 integrase INTI1 [Pseudomonas aeruginosa]
          Length = 337

 Score = 92.4 bits (228), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 42/306 (13%), Positives = 92/306 (30%), Gaps = 62/306 (20%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129
           ++ + R+   +   ++ +   + ++    IR  G      + +  + + +      RK +
Sbjct: 16  VLDQLRERIRYLHYSLRTGQGYVNWVCAFIRFHGVGHPATLGSSEVEAFLFWLAHERKVS 75

Query: 130 PSSAIQFLTSMRVLFK--WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            S+  Q L ++   +         ++       + RP+         T +++     F  
Sbjct: 76  VSTHCQALAALLFFYGKVLCTDLPWLQ-----EIGRPRPLRRLPVVLTPDEVVCILGFL- 129

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQH--LQNNIFSIKTQKTGTIITVELPDGFMKLL 245
           EG   RL  + L  +G+R S+  +  V+     +    ++  K      + LP+     L
Sbjct: 130 EGEH-RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSL 188

Query: 246 AMTPIGKETFFINN---------------------------------------------D 260
                    +++ +                                              
Sbjct: 189 REQLSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVR 248

Query: 261 KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           +  M    F   FK    +AG+ K  + H +R   AT    +G     +    G   V  
Sbjct: 249 RHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVST 308

Query: 319 AETYTK 324
              YT 
Sbjct: 309 TMIYTH 314


>gi|224542974|ref|ZP_03683513.1| hypothetical protein CATMIT_02168 [Catenibacterium mitsuokai DSM
           15897]
 gi|224524112|gb|EEF93217.1| hypothetical protein CATMIT_02168 [Catenibacterium mitsuokai DSM
           15897]
          Length = 354

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/286 (15%), Positives = 89/286 (31%), Gaps = 35/286 (12%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGVESRKH 128
           LI  +        L+  +   +    ++ +               +     R  ++    
Sbjct: 55  LIQRFLIQKKIDGLSKRTIDYYRVTLEKWLHFYIKKSVLEWTRDDVRMHFARRMIDYPDV 114

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAI-NPCLSVERPKRKTEGIRPWTKEDMQQFKS--- 184
           +  +      +    F W + + Y+   NP  ++++ K       P   + ++  +    
Sbjct: 115 SKVTINNDRRNFSSFFTWLMDEGYLRNGNPMKAMKKIKVDKVIKEPIPDDQIEVMRDKLA 174

Query: 185 -----------FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233
                       W +  + +  FE LL +G R  +   A ++ L      IK    G   
Sbjct: 175 EKKSANKIGTRLWLKAVRDQAIFELLLTTGCRIGELTTAKIKDLDLERKEIKVFGKGAKE 234

Query: 234 TVELPDGFMKLL------AMTPIGKETFFIN---NDKQKMNATQFSIW-----FKAKATK 279
            V   +    L       A   I  E  F++    + +K N  +  I       +    +
Sbjct: 235 RVCYLNTLSVLRMQQWLEARKDIENEYIFVSCDSANGKKGNHARLQISGVEINIRKLGRE 294

Query: 280 AGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            G  N   H  R+ +AT +   G    ++    G + +D    Y K
Sbjct: 295 CGFENIHPHRFRRTAATTALRKGMPIEQVQLMLGHEQIDTTMIYAK 340


>gi|254438184|ref|ZP_05051678.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
 gi|198253630|gb|EDY77944.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
          Length = 419

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 40/260 (15%), Positives = 83/260 (31%), Gaps = 19/260 (7%)

Query: 82  AHWGS--LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
             W +  +   +    E   +++    G     K    +    ++  K TP  A +    
Sbjct: 134 PEWSNRLVTEITPYDVEKLLNKVAA--GRARPSKAKPNNRARKLQGAKPTPVRANRTGEV 191

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA--FE 197
           +R +F +AV   +   NP  S  R        R  + E++ +           R A    
Sbjct: 192 LRKMFTYAVGWGWREDNPASSFRRRIENARE-RFLSHEEIHKLAEALEAAEDRRAADIIR 250

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKT----QKTGTIITVELPDGFMKLLA----MTP 249
             + +G R  +  +A   H      S        K   +  + + D    ++     + P
Sbjct: 251 LCMLTGARVGEVRQAQFIHFNLEHLSWSKPASMTKQRKVHRLPISDEAAAIVRQRQLLVP 310

Query: 250 IGKETFFINN-DKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHEL 307
            G +  F  +   Q     +   ++     + G+ +   H +R   A++    GA+   +
Sbjct: 311 RGCQLLFPGDVPGQP--VKEIRRFWSNIQKQIGIPDVRIHDLRHTFASLLVSGGASLEMI 368

Query: 308 MATYGWKTVDQAETYTKGAD 327
               G   +   + Y    D
Sbjct: 369 GKLLGHSQMQTTQRYAHLMD 388


>gi|117922211|ref|YP_871403.1| phage integrase family protein [Shewanella sp. ANA-3]
 gi|117614543|gb|ABK49997.1| phage integrase family protein [Shewanella sp. ANA-3]
          Length = 404

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 57/306 (18%), Positives = 105/306 (34%), Gaps = 35/306 (11%)

Query: 53  GSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYR 112
           G  P  E     ++K  T+  L +++   A    L  +       Y  ++    G    +
Sbjct: 78  GGDPLAERAKIGQEKIQTVDDLFNDWFVDAK-KRLKHSEIP-LRIYTKEVQPYIGRLQIK 135

Query: 113 KITTKHIRSGVESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPC---LSVERPKRK 167
            +T   IR+ ++   H   P++A   L   + LF  A +      NP       +    +
Sbjct: 136 DVTPLDIRNIIQKVAHSNRPTTANDTLLHCKKLFTHACKLGLKDGNPASHFKPADAGGVE 195

Query: 168 TEGIRPWTKEDMQQFKSFWSE-----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222
               R  + E+++QF S   +     G    LA   L+  G+R  +  +   Q +  N+ 
Sbjct: 196 KSRERALSVEELKQFFSVAKDNISSFGRDNYLASALLVCLGVRKGELLKLTWQEIDLNLK 255

Query: 223 SIK----TQKTGTIITVELPDGFMKL---LAMTPIGKETFFINNDKQKMNATQFSIWFKA 275
             K      K+   I++ LPD  ++    L +   G +  F N    K          +A
Sbjct: 256 LWKLPQPRTKSSKAISIPLPDSVVEWFEELQIRACGSDYVFPNRKASKKPHVSGDTLNRA 315

Query: 276 KATKAG---------VNK-------SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
            A+  G         +N+       + H  R+   ++ A  G  +H        K     
Sbjct: 316 VASLFGHDSSKTRQPINRMGEIPYFTIHDFRRTCRSLLAKQGVPSHIAERCLNHKIKGVE 375

Query: 320 ETYTKG 325
             Y + 
Sbjct: 376 GIYDRY 381


>gi|239905355|ref|YP_002952094.1| site-specific recombinase [Desulfovibrio magneticus RS-1]
 gi|239795219|dbj|BAH74208.1| site-specific recombinase [Desulfovibrio magneticus RS-1]
          Length = 411

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 51/305 (16%), Positives = 106/305 (34%), Gaps = 19/305 (6%)

Query: 50  ALTGSTPKREYINSPRKKPTTLKWLI-SEYRKSAHWGSLAVNSRISFESYFD-QIIRKSG 107
           A      ++  +    ++          +Y  +        + +   E++F   +    G
Sbjct: 85  AEARRKAEQTAMERDARQGVIFDAFWQDDYVIALRNRVKPESYQKE-EAHFKFWLSPTLG 143

Query: 108 DFDYRKITTKHIRSGVESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAIN-PCLSVER 163
               R+IT   +    +  +    +  S    + + R ++K A +++ VA+  P   ++ 
Sbjct: 144 KLPLREITEADLERVQDKIRAAGLSDRSHEYIMGTFRRVWKHAFKRKIVAVECPVGKLDI 203

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWS-EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NN 220
           PK     +R  T E++Q   +  +           F L +G R S++ +   +++     
Sbjct: 204 PKPVNTRLRVLTPEEIQALLAELATVDQTAHDLTVFALLTGCRASEAFKLRWENVDFVRE 263

Query: 221 IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280
                  K      V L    + +L     G+   ++   +           FK    + 
Sbjct: 264 AALFPETKNREPREVFLAADVLDMLKRRGPGRPGEYVFTKRDGTPYDAAPSSFKTALERL 323

Query: 281 GVN--------KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRL 331
           G N         + H +R  +AT +A  G    ++   +GWKT      Y KG+ D  R 
Sbjct: 324 GFNEGRALRDRATFHNLRHSAATYAARRGVPVKDMQTIFGWKTPSMVFRYAKGSEDVQRR 383

Query: 332 GIKNS 336
            +K  
Sbjct: 384 AMKGL 388


>gi|239630751|ref|ZP_04673782.1| site-specific recombinase [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|239527034|gb|EEQ66035.1| site-specific recombinase [Lactobacillus paracasei subsp. paracasei
           8700:2]
          Length = 385

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 54/356 (15%), Positives = 108/356 (30%), Gaps = 50/356 (14%)

Query: 13  KERTRHGKIIYYFRK-------GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
           K  T+ GK  +  +           ++ ++    ++       +A          + + +
Sbjct: 6   KYATKDGKEFWRVQVFAGNDPQTGHKKYKVRRGFKTKKEATVAAARLELAISNGDLENEK 65

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE 124
             P   + +  E+  +    ++  ++       F+  I+   G      ITTK ++  V+
Sbjct: 66  PTPVFFRDVYEEWYGNYI-NTVRESTWARTAGMFNNHILPAFGGKRIATITTKDVQKAVK 124

Query: 125 SRKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT-EGIRP---WTKEDM 179
                T ++  ++   +  +  +AVRQ Y+  NP  +V  P      G +P   WTKE M
Sbjct: 125 RWFEFTSANYKRWYNYVSSVMDYAVRQGYMDKNPAKAVVLPHHDDLAGDKPENFWTKEQM 184

Query: 180 QQFKSFWSEGSQ--PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT----GTII 233
            +F +   + +     + F  L ++G+R  +        +     SIK  KT        
Sbjct: 185 NRFFACIDQANHFDIFIMFRVLAFTGVRRGELLALTWNDVSFKENSIKVNKTLTQGDKGH 244

Query: 234 TVELPDGFMKLLAMTPIGKET----------------------------FFINNDKQKMN 265
            +             P+  +T                             F N      +
Sbjct: 245 QIVQAPKTRAGRRTIPVDGQTMAYLKRWRRIQQETFLQLGINTMQPNQLLFTNTKNGYQS 304

Query: 266 ATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
               S          G+    + HG R    +    AG     +    G       
Sbjct: 305 LNTPSKRLHKLQDDNGLTPRITIHGFRHSFISNLLIAGVPVTSVQKLVGHTDPTIT 360


>gi|218130592|ref|ZP_03459396.1| hypothetical protein BACEGG_02181 [Bacteroides eggerthii DSM 20697]
 gi|217986936|gb|EEC53267.1| hypothetical protein BACEGG_02181 [Bacteroides eggerthii DSM 20697]
          Length = 403

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 56/289 (19%), Positives = 96/289 (33%), Gaps = 35/289 (12%)

Query: 76  SEYRKSAHWGSLAVNSRIS---FESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132
           S YR+S    S      +S    +  F+ I    G            +  ++S+      
Sbjct: 126 SSYRQSKSSQSYLHEYLLSLGMRDITFEDITEDFG---------WGYKLYLKSKDCGAGH 176

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF-KSFWSEGSQ 191
               LT +  L   AV +E +  NP   V   K+    +R  ++ ++Q+  +    E  Q
Sbjct: 177 INHCLTWLNRLIYIAVDREVIRFNPLADVTYEKKPDSKLRHISRAELQRIMEQPMPERLQ 236

Query: 192 P--RLAFEFLLYSGLRCSDSCRAGVQHLQ-----NNIFSIKTQKTGTIITVELPDGFMKL 244
              R AF F  ++GL   D  R    H+           I  +KT     + L     ++
Sbjct: 237 ELTRRAFIFSAFTGLSYVDVKRLYPSHIGTTADGRRFIRINRKKTDVESFIPLHPVAEQI 296

Query: 245 LAMTPIGKETFFINNDKQK----MNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISA 298
           L         +   +D +      N  +           AGV  N S H  R    T++ 
Sbjct: 297 L-------SLYNTTDDGRPVFPLPNRNRLWYCIHEIGILAGVKENLSYHASRHSFGTLTL 349

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
            AG     +    G   +   + Y K  D      ++  R+    ++ D
Sbjct: 350 SAGVPIESISKMIGHTNIRTTQGYAKVTDDK--ISEDMDRLMERRNATD 396


>gi|67920313|ref|ZP_00513833.1| Phage integrase:Phage integrase, N-terminal SAM-like [Crocosphaera
           watsonii WH 8501]
 gi|67857797|gb|EAM53036.1| Phage integrase:Phage integrase, N-terminal SAM-like [Crocosphaera
           watsonii WH 8501]
          Length = 322

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 50/288 (17%), Positives = 98/288 (34%), Gaps = 31/288 (10%)

Query: 85  GSLAVNSRISFESYFDQIIR--KSGD-----FDYRKITTKHIRSGVES--RKHTPSSAIQ 135
             L   SR +     + I     +GD      D+ K+   H  +   +  +K  P +A +
Sbjct: 35  SGLGEGSRRTIRYSLNTIASLLTNGDCDADTLDWSKLRYHHTAAVRVALLQKLAPVTANK 94

Query: 136 FLTSMRVLFKWAVRQEYVA-INPCLSVERPKRKTEGI---RPWTKEDMQQFKSFWSEGS- 190
            L+++R +   A R   +A  +   +V+ P  + E     R     +++       E S 
Sbjct: 95  MLSALRRVLLEAYRLGLMAADDYQKAVDFPNIQAEPELRGRSLDSTEIRALLGTCGEESV 154

Query: 191 ---QPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTGTIITVELP----DGF 241
              +       L  +G+R S+  +  ++          ++  K G    V LP       
Sbjct: 155 MDIRDAAIMVMLRGTGIRRSELVKLELRDFDEQTGEVLVRKGKRGKTRRVYLPFDAISFI 214

Query: 242 MKLLAMTPIGKETFFINNDKQK------MNATQFSIWFKAKATKAGVNK-SAHGVRKFSA 294
            + L +    +   F    +        MN+       + +A  AG+   S H  R+   
Sbjct: 215 QRWLGVRGEEEVCLFCRIHRGGHLKLGQMNSDTVWRIIQKRAKMAGIESFSPHDFRRTFC 274

Query: 295 TISADAGATAHELMATYGWKTVDQAETY-TKGADRIRLGIKNSRRISS 341
           +   DAG     +    G  +      Y  +G +  R  ++  +   S
Sbjct: 275 SDLLDAGVDIVTVQKLAGHSSPVTTAKYDRRGEETKRRAVQCLKLTDS 322


>gi|291534558|emb|CBL07670.1| Site-specific recombinase XerD [Roseburia intestinalis M50/1]
          Length = 404

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 50/340 (14%), Positives = 118/340 (34%), Gaps = 27/340 (7%)

Query: 3   PSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62
           P  R  P+  +  +  GK I        +R+ L Y   +     Y++    S    E  N
Sbjct: 52  PGHRRKPYAARITS--GKTITASGNIAPKRVYLGYFRTAKEAQEYLNRYAHSEDPTEKTN 109

Query: 63  SPRKK------------PTTLKWL---ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG 107
              K               T   +     EY KS    + + ++  +  + ++ +     
Sbjct: 110 VSEKTLEYQKTNASVKYSPTFSNVYGETIEYLKSRK-RNYSDSTYKALNAAYNNLSSLH- 167

Query: 108 DFDYRKITTKHIRSGVESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
            + +R I  + ++  +      + SS       ++ ++  A++Q+YV  +     +    
Sbjct: 168 SYKFRNIDYQLLQEAISKNDTLSKSSLNNIRNLLKKMYTLALKQKYVTDDISKLCDYDYT 227

Query: 167 --KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFS 223
               E   P+T +++   ++     S  +     LLY+G+R  +      +++  ++ + 
Sbjct: 228 TVSDEKHHPFTHDEINLIRNTSP--SPEKDMVLILLYTGIRAEEFLILENKNIHLDDQYF 285

Query: 224 IKTQKT--GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281
           I   KT  G    + + +  + ++      K+ +F + +  +         F     +  
Sbjct: 286 ITGVKTDAGKSRIIPIHNDILPIIQKYYNPKKHYFWDFNGSQRIYQTLRWRFDRLMKQLN 345

Query: 282 VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
           ++   H  R  +AT   +A      +    G    D  + 
Sbjct: 346 IDHIPHDTRHTTATAMHNANLDIMYIKLILGHHINDITQR 385


>gi|260770269|ref|ZP_05879202.1| integron integrase IntI4 [Vibrio furnissii CIP 102972]
 gi|260615607|gb|EEX40793.1| integron integrase IntI4 [Vibrio furnissii CIP 102972]
          Length = 329

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 46/303 (15%), Positives = 99/303 (32%), Gaps = 62/303 (20%)

Query: 83  HWGSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVE----SRKHTPSSAIQ 135
            +  +   +R + ESY   +   IR  G+    K+  + + + +     S++   S+   
Sbjct: 11  EFMQVRHYARKTIESYLYWVVQYIRFHGNQHPNKLGNRDVEAFLSDLVVSKQVAASTQNL 70

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195
            L ++  L+K  +++    ++  L     K++ +     T  ++++  +     +   L 
Sbjct: 71  ALNALVFLYKEFLKK---PLDIDLRFRHSKKQRKLPVVLTPTEIKKLFAAIPAQT--LLP 125

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLAMTPIGKE 253
           ++ +  SGLR  ++ R  V+ +  +  +I+    K G    V L      LL       +
Sbjct: 126 YQLMYGSGLRLMETIRLRVKDIDFDYGAIRGWQSKGGKSRVVTLAKELHPLLRFQIETVK 185

Query: 254 TFFINN----------------------------------------------DKQKMNAT 267
             +  +                                               +  ++ T
Sbjct: 186 HLYTQDQLNPNYDGVQMPNRLAEKYPSASKSLEWQFLFPAKQLCRYGDKPGWYRHHLHET 245

Query: 268 QFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
                       A + K  S H +R   AT   +AGA    +    G   V   + YT  
Sbjct: 246 TLQKTIIKARFTAEIAKPLSCHTLRHSFATHLLEAGADIRTVQEQLGHSDVKTTQIYTHV 305

Query: 326 ADR 328
            +R
Sbjct: 306 IER 308


>gi|210622955|ref|ZP_03293460.1| hypothetical protein CLOHIR_01408 [Clostridium hiranonis DSM 13275]
 gi|210153921|gb|EEA84927.1| hypothetical protein CLOHIR_01408 [Clostridium hiranonis DSM 13275]
          Length = 377

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 60/360 (16%), Positives = 109/360 (30%), Gaps = 50/360 (13%)

Query: 17  RHGKIIYYF------RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
           R     +YF        G  +R+              M        K  Y    ++   T
Sbjct: 5   RKKGDRWYFSVELPQENGKRKRVERRGGKTKKEAQEKMKLFEAEVLKNGY---KKECKMT 61

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHT 129
              L + +       +   ++  ++  Y+   I    G++    I  + +       K  
Sbjct: 62  FDELYNIWFNEYVLNNCKESTTNNYARYYKKHIKPILGNYKVSDIKARVLSDFFNKLKEE 121

Query: 130 P---SSAIQFLTSMRVLFKWAV-RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
               SSA      +     +A+   E +  N C  ++ PK K    +     DM+ F++ 
Sbjct: 122 DKCHSSANIIRVVISSCLDYAIFPLEIIENNSCKFIKFPKFKKTKDKK-DIIDMKDFETI 180

Query: 186 WSEGSQPRL---AFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIK--------------T 226
              GS           LL++GLR  ++     + +   N I  ++              T
Sbjct: 181 LDIGSSKHNFNNMCLLLLHTGLRIGEALGLQWEDIDFDNKIIHVRHTLIAPNVRECKLST 240

Query: 227 QKTGTII-TVELPDGFMKLLAMTPIG--------------KETFFINNDKQKMNATQFSI 271
            KT T I  +   D   K+                         F + D   ++   F+ 
Sbjct: 241 PKTKTSIRDIYFNDTVEKVFKNIKKSQNENRLKFGVLYNCNNMVFTHEDGSFLDHHHFTN 300

Query: 272 WFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIR 330
                  K  +N S H  R   AT+   AGA   ++ A  G   +      Y +  +  +
Sbjct: 301 MVAKINRKTNINFSMHTFRHTHATMLLQAGANMKDVQARLGHADISTTMNIYVQDTEESK 360


>gi|78212908|ref|YP_381687.1| site-specific recombinase XerD-like [Synechococcus sp. CC9605]
 gi|78197367|gb|ABB35132.1| Site-specific recombinase XerD-like [Synechococcus sp. CC9605]
          Length = 400

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/296 (12%), Positives = 94/296 (31%), Gaps = 27/296 (9%)

Query: 55  TPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI 114
             ++  I +      + + LI     +      A ++   ++ +  + +  +G     ++
Sbjct: 112 VERQSRIEAGLPVERSWQDLID---LAVRLKDPAPSTLGEWKRHLSKAMEVAGVESVDQV 168

Query: 115 TTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINP--CLSVERPKRKTEG 170
           T  H R   +    +   S+    L  ++ LF+ A  ++++  NP   + ++R K K++ 
Sbjct: 169 TEAHARKYRDHLLDSVQASTTKTRLRYVKALFEVAEEEDWIERNPFNAIKLKRIKAKSKP 228

Query: 171 IRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI------ 224
                 ++  +           +L +  + YSG   S++       +             
Sbjct: 229 KEVQLLDEADKL--IHKLPDHQQLLYWLMKYSGCHVSEAAGIRADDIDLEQGIFHIREND 286

Query: 225 -KTQKTGTII-TVELPDGFMKLLAMTPIG--KETFFINNDKQKMNATQFSIWFKAKATKA 280
            +  K    +  + +     K +    +   K   F    + K       + +  +    
Sbjct: 287 LRPVKNAYRVRDIPIIPALRKHIEGAKLRGIKGYVFPGLYEDKYKRWGNGMSWHRR---- 342

Query: 281 GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY---TKGADRIRLGI 333
            +  S    R  + T+    G     + +  G         Y   T  A R  L +
Sbjct: 343 -IGVSPKACRDAATTVLRAHGVNEFVIGSILGHTPKTSTNRYGSVTMDAKRKALEL 397


>gi|325280482|ref|YP_004253024.1| integrase family protein [Odoribacter splanchnicus DSM 20712]
 gi|324312291|gb|ADY32844.1| integrase family protein [Odoribacter splanchnicus DSM 20712]
          Length = 372

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 82/232 (35%), Gaps = 12/232 (5%)

Query: 111 YRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170
           +R+      +     R  + +SA+ + ++ R   K   R + +  N    +E+ + +   
Sbjct: 138 FREYLLNAKQLRRPERPISRNSAVGYWSTFRGFLKILYRNKLIHSNVNDFLEKIEPEDVV 197

Query: 171 IRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-----QNNIFSIK 225
               + E++ +      +    + A  F   + LR SD      + +             
Sbjct: 198 KDYLSVEELYRLAETPCKIPVLKTASLFSCLTSLRISDILTLRWEEIVDFAAGGKCVYTV 257

Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284
           TQKT T   + + D  ++L+  +P      F    K+           K     AG+ K 
Sbjct: 258 TQKTKTEDIIPISDEALQLIGYSPEKTGLVF-KGLKRCWTQYP----MKEWIRTAGITKN 312

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335
            + H  R+  AT+ A  G     + +    K++   + Y K  D  +    N
Sbjct: 313 ITFHSYRRTFATLQAATGTDIRTIQSIMAHKSITTTQRYMKVVDSNKRKASN 364


>gi|265983027|ref|ZP_06095762.1| tyrosine recombinase xerD [Brucella sp. 83/13]
 gi|264661619|gb|EEZ31880.1| tyrosine recombinase xerD [Brucella sp. 83/13]
          Length = 309

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/272 (15%), Positives = 94/272 (34%), Gaps = 32/272 (11%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHT---PSSAIQFLTS 139
              A N+  S+    +    +      +  +  T HIR  +++       P+S  + L++
Sbjct: 20  RGAAQNTLESYRRDLEAAAEELAAKGVNLAEAETGHIRMTLDTMAAQGFAPTSQARRLSA 79

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS------------ 187
           +R  F++   + +   +P   ++ PK++    +  + E++ +     +            
Sbjct: 80  LRQFFRFLYSEGFRQDDPTGILDAPKKQKPLPKIMSVENVGKLLDRAALEANEAAEPGER 139

Query: 188 -EGSQPRLAFEFLLYSGLRCSDSCRAGVQ-HLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
            +  +     E L  +GLR S+     V     ++ F +   K      V L     + L
Sbjct: 140 IKALRLHALLETLYATGLRVSELVGLPVTVARTDHRFLLVRGKGSKDRMVPLSRKAREAL 199

Query: 246 AM-------TPIGKETFFIN---NDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKF 292
                     P   +  ++    ++   +    F+   K  A +AG+     S H +R  
Sbjct: 200 QKFLTLRDSLPGSDDNPWLFPAFSESGHLARQVFARELKGLAARAGLAASSVSPHVLRHA 259

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324
            A+     GA    +    G   +   + YT 
Sbjct: 260 FASHLLQNGADLRTVQQLLGHADISTTQIYTH 291


>gi|313126748|ref|YP_004037018.1| site-specific recombinase xerd [Halogeometricum borinquense DSM
           11551]
 gi|312293113|gb|ADQ67573.1| site-specific recombinase XerD [Halogeometricum borinquense DSM
           11551]
          Length = 311

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/289 (12%), Positives = 83/289 (28%), Gaps = 47/289 (16%)

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLT 138
           +++    +   ++   +  + D+   + GD +   + +  +    E          +   
Sbjct: 14  KQTEGTANRYASAIRRYRDWLDERGVEFGDANQDDVESHLLDLADEDYAKGSLKIAR--A 71

Query: 139 SMRVLFKWAVRQEYVAINPCLSV------------ERPKRKTEGIRPWTKEDMQQF--KS 184
            +   +      E    NP   V            ++ +   + +   T +++QQ     
Sbjct: 72  GIAKFYD-----EMYDYNPVEDVSIGSWTAVKKGSKKSQSLRDDVHYLTPDEVQQLVDNV 126

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFM 242
                 +  L  + L  +G+R  + C+  +  +        I   KT +  TV       
Sbjct: 127 HSPPKLRNELIIKMLFQTGMRRGELCKVKLHDVNREERSIRIHADKTHSNRTVYYQPSLS 186

Query: 243 KLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---------- 282
             L +          T       F     + +     S   +  A +AG+          
Sbjct: 187 TPLNIWIDAERNGVLTADDSPHLFPTQKAEHIKPNSVSRIVREAAEEAGIQEVMYHDKGG 246

Query: 283 ----NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
                 + H +R   A  +   G     L    G   ++  + Y   AD
Sbjct: 247 RPKRKITGHTLRHSFAVAALKNGMDVRTLQKLMGHADIETTQMYLDLAD 295


>gi|211906279|gb|ACJ11657.1| putative phage-associated helicase [Candidatus Hamiltonella
           defensa]
          Length = 357

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 48/293 (16%), Positives = 101/293 (34%), Gaps = 34/293 (11%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE-----SRKHTPSSAIQFLTS 139
             L   +     S   ++  +     ++       R G+E     +++ + ++  + L  
Sbjct: 60  TRLKDMTEAKIYSAISKMKNRQEQLRWKSRVNSAKRKGIEIPAYQAKEVSIATKAKHLAL 119

Query: 140 MRVLFKWA-VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEF 198
           ++ + K A    +++  +P   ++ P  + + IR    ++ ++  +   E    R   EF
Sbjct: 120 LKSMMKSAERDWKWIEKSPV--IKVPSAREKRIRWLEPDEAERLINECPEPL--RSTVEF 175

Query: 199 LLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254
            L +GLR S+        +           +  K+G  I V L D    +L       + 
Sbjct: 176 ALATGLRRSNIINLAWSQIDMQRKVAWIEPENSKSGKAIGVALNDTACCILTRQLGNHQK 235

Query: 255 FFI-------------NNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADA 300
           +                N  +KM     + W +A   +AG+ N   H +R   A+    +
Sbjct: 236 WVFVHTMSAKRSDGSQTNSIRKMRVDSNTAW-RAALKRAGIENFRFHDLRHTWASWLIQS 294

Query: 301 GATAHELMATYGWKTVDQAETYTKGADR-----IRLGIKNSRRISSVVDSDDP 348
           G     L    GW++V+    Y   A        +       R +  + +  P
Sbjct: 295 GVPLSVLQEMGGWESVEMVRRYAHLASNHLTEHAKQIDGVFDRFNRKISNHVP 347


>gi|154245579|ref|YP_001416537.1| integrase family protein [Xanthobacter autotrophicus Py2]
 gi|154159664|gb|ABS66880.1| integrase family protein [Xanthobacter autotrophicus Py2]
          Length = 354

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 44/294 (14%), Positives = 88/294 (29%), Gaps = 53/294 (18%)

Query: 89  VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT---PSSAIQFLTSMRVLFK 145
            N+  ++      +          +  T  IR+ +          ++  + L+++R  ++
Sbjct: 47  PNTLDAYRRDLTDLAEFLAPVSLAEADTSAIRAYLADLSARGFAATTVARRLSALRQFYR 106

Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF-KSFWSEGSQP------------ 192
           +   + + A +P   +E PKR     +  +  ++ +   +  +  +Q             
Sbjct: 107 FLFAEGHRADDPAAVLEGPKRGRPLPKVLSVAEVTRLIDTAHARAAQAEESLNAGQGGEG 166

Query: 193 -------------------RL-----AFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQ 227
                              RL       E L  SGLR S+         +    +I  T 
Sbjct: 167 QGEETPGAGAAKAGRAELLRLRRVACMVELLYASGLRVSELVALPAAAARAQGEAILVTG 226

Query: 228 KTGTIITVELP-------DGFMKLLAMTPIGKETFFI--NNDKQKMNATQFSIWFKAKAT 278
           K      V L          F+       +    +     ++   +   Q +   K  A 
Sbjct: 227 KGRKERLVPLSGPAKVAMQAFLAARRAAGLEASRWLFPSGSESGHVTRQQAARDLKELAL 286

Query: 279 KAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            AG++    S H +R   A+     GA    +    G   V   + YT   D  
Sbjct: 287 AAGLDPAKLSPHVLRHAFASHLLAHGADLRVVQTLLGHADVSTTQIYTHVLDER 340


>gi|323978150|gb|EGB73236.1| phage integrase [Escherichia coli TW10509]
          Length = 317

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 49/301 (16%), Positives = 98/301 (32%), Gaps = 12/301 (3%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRK-SAHWGS 86
             G+RIR  +  +S  +      L          NS  ++P ++  LI  + K       
Sbjct: 6   RKGKRIRKKFKTKSDAVLYERWVLAQLHNNEWKGNSIDRRPLSV--LIDLWWKYHGQLMK 63

Query: 87  LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKW 146
              N+R+      + +           + T+ +R     +   PS+  + + ++  +F  
Sbjct: 64  SGHNTRLKLLRLSEAMDDPCVHKLNTTMLTE-LRVSRIEQGIQPSTINREIGALSAMFTA 122

Query: 147 AVRQEY-VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLR 205
            +   + +  NP   ++  K     +   +K +  Q     +E    RLA E LL +G R
Sbjct: 123 LISSGHFLNDNPIQGLKGMKVNEREMGYLSKSECVQLLDALAENPDERLAVEILLSTGAR 182

Query: 206 CSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN 265
             +      + + +   +    K     TV + +   +   +   G +  F   D     
Sbjct: 183 WGEVAALEQRRVLHCRITFSKTKNSKNRTVPISESLFE--KIKKRGGKLVFPTLD----- 235

Query: 266 ATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
            +      K  A      ++ H +R   A+     G     L    G   +     Y   
Sbjct: 236 YSLVRDVIKTVAPDVPDGQAVHALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIYAHL 295

Query: 326 A 326
           A
Sbjct: 296 A 296


>gi|325912776|ref|ZP_08175155.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners UPII 60-B]
 gi|325477907|gb|EGC81040.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners UPII 60-B]
          Length = 373

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 65/363 (17%), Positives = 121/363 (33%), Gaps = 36/363 (9%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHE--STFIPAYMSALTGSTPKREYINS-PR 65
             V K  T+ G I Y F+   G  I         S F     +       K E ++S  +
Sbjct: 6   KRVEKYETKKG-IRYRFKTYVGTDINGKKVWATRSGFTSYTEAKYELDKLKLEGVDSFVK 64

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
           +K   +  L +++  +         +  ++E Y   I  K G+    KIT   ++    +
Sbjct: 65  QKQIKVNDLFTQWFDTYQTTVKESTAHKTYEMYKIHIKPKYGNAYVDKITPASLQRFANA 124

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-----PWTKEDMQ 180
                      L  +       +   Y+ +NP   +  PK+ T   R       ++E++ 
Sbjct: 125 LSKKLVKYRTALGILERTLNLGISLGYLKVNPFSKILIPKKTTRKRRDTSINFLSREELD 184

Query: 181 QFKSFW-SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT---------- 229
            F     S      L F  L  +GLR  ++       +  N   I   KT          
Sbjct: 185 TFLKKAESINHLYYLFFLLLASTGLRKGEALALHWSDIDFNTNQISVTKTLAYGLDNKYI 244

Query: 230 -------GTIITVELP----DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF-KAKA 277
                   ++ TV L     +  +K      I  E  F   D   +  ++ + W      
Sbjct: 245 VQTPKSPKSLRTVPLSTHLKEELLKYKDNQKIDTEIIFHTIDGNYLRLSKPTRWLDTIYK 304

Query: 278 TKAGVNK-SAHGVRKFSATISADAG--ATAHELMATYGWKTVDQA-ETYTKGADRIRLGI 333
               + + + HG R   A++  ++       ++ A  G +TV+     YT   ++ +  +
Sbjct: 305 QLPDLKRITTHGFRHTFASLLIESNPYIKPSDVQAILGHETVEMTLNIYTHVTNQSKKKV 364

Query: 334 KNS 336
             S
Sbjct: 365 AQS 367


>gi|291281088|ref|YP_003497906.1| Site-specific recombinase, phage integrase family [Escherichia coli
           O55:H7 str. CB9615]
 gi|290760961|gb|ADD54922.1| Site-specific recombinase, phage integrase family [Escherichia coli
           O55:H7 str. CB9615]
 gi|320660256|gb|EFX27766.1| Site-specific recombinase, phage integrase family protein
           [Escherichia coli O55:H7 str. USDA 5905]
          Length = 386

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 46/275 (16%), Positives = 94/275 (34%), Gaps = 26/275 (9%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
           K +IS +        L+  +        D +  +    ++     + +R G    ++ P 
Sbjct: 80  KSIISFWMLHFRETILSDITTEKIMEAVDGMENRRHRLNWEMSRDRCLRLGKPVPEYKPK 139

Query: 132 SAI-----QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            A      + L  +R +   AV   ++   P   +  P+ K   IR  T+E+ ++  +  
Sbjct: 140 LASKGTKTRHLAILRAILNMAVECGWLDRAP--KISTPRVKNGRIRWLTEEESKRLFAEI 197

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGFM 242
           +    P + F     +GLR S+        +  +           K G  I V L +   
Sbjct: 198 APHFFPVVMFAIT--TGLRRSNVTDLEWSQVDLDKKMAWMHPDETKAGNAIGVPLNETAC 255

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFS------------IWFKAKATKAGV-NKSAHGV 289
           ++L       + +   + K    +                  +K    +AG+ N   H +
Sbjct: 256 QILRKQQGLHKRWVFVHTKPAYRSDGTKTAAVRKMRTDSNKAWKGALKRAGISNFRFHDL 315

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           R   A+    +G +   L    GW+T++  + Y  
Sbjct: 316 RHTWASWLVQSGVSLLALKEMGGWETLEMVQRYAH 350


>gi|259417214|ref|ZP_05741133.1| site-specific tyrosine recombinase XerC [Silicibacter sp.
           TrichCH4B]
 gi|259346120|gb|EEW57934.1| site-specific tyrosine recombinase XerC [Silicibacter sp.
           TrichCH4B]
          Length = 311

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 41/263 (15%), Positives = 83/263 (31%), Gaps = 27/263 (10%)

Query: 88  AVNSRISFESYFDQIIR--------KSGDFDYRKITTKHIRSGVESRKH---TPSSAIQF 136
           A N+R ++       +           G     +ITT  +R+ + S ++      S  + 
Sbjct: 31  ADNTRTAYRGDVVDFLAFMSLHFGGPQGLGALSQITTADMRAWMASSRNAGTGARSLARK 90

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-------EG 189
           L++++  + W  ++E       LS   PK + +  RP  K+  +                
Sbjct: 91  LSAVKKFYGWLAKREGFEPTAVLSTRSPKFQKKLPRPLDKDAARAMIDTVELQSQQDWVA 150

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM-- 247
           ++       L   GLR S++     +            K G    V +     + ++   
Sbjct: 151 ARDVAVVTLLYGCGLRISEALGLLGKDAPLPATLRIKGKGGKERIVPVLPAAQQAVSRYL 210

Query: 248 -----TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADA 300
                        F       ++A            + G+  +A  H +R   AT   +A
Sbjct: 211 KLCPHPQEASLPLFRGVRGGGLHARMIQGVVADARRQLGLPATATPHAMRHSFATHLLEA 270

Query: 301 GATAHELMATYGWKTVDQAETYT 323
           G     +    G  ++   + YT
Sbjct: 271 GGDLRAIQELLGHASLSTTQAYT 293


>gi|241992564|gb|ACS73629.1| IntI1 [uncultured bacterium]
          Length = 315

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 42/306 (13%), Positives = 93/306 (30%), Gaps = 62/306 (20%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129
           ++ + R+   +   ++ +  ++  +    IR  G      + +  + + +      RK +
Sbjct: 16  VLDQLRERIRYLHYSLLTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75

Query: 130 PSSAIQFLTSMRVLFK--WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            S+  Q L ++   +         ++       + RP+         T +++ +   F  
Sbjct: 76  VSTHRQALAALLFFYGKVLCTDLPWLQ-----EIGRPRPSRRLPVVLTPDEVVRILGFL- 129

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQH--LQNNIFSIKTQKTGTIITVELPDGFMKLL 245
           EG   RL  + L  +G+R S+  +  V+     +    ++  K      + LP+     L
Sbjct: 130 EGEH-RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSL 188

Query: 246 AMTPIGKETFFINN---------------------------------------------D 260
                    +++ +                                              
Sbjct: 189 RERLSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVR 248

Query: 261 KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           +  M    F   FK    +AG+ K  + H +R   AT    +G     +    G   V  
Sbjct: 249 RHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVST 308

Query: 319 AETYTK 324
              YT 
Sbjct: 309 TMIYTH 314


>gi|194436337|ref|ZP_03068439.1| integrase [Escherichia coli 101-1]
 gi|283787274|ref|YP_003367139.1| phage integrase [Citrobacter rodentium ICC168]
 gi|194425065|gb|EDX41050.1| integrase [Escherichia coli 101-1]
 gi|282950728|emb|CBG90404.1| phage integrase [Citrobacter rodentium ICC168]
          Length = 334

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 56/311 (18%), Positives = 107/311 (34%), Gaps = 14/311 (4%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIP-AYMSALTGSTPKREYINSPRKKPTTLKWLISE 77
           G+ +   R    +  R+    +   +  A    +  +  KREYI   R +  TL  L+  
Sbjct: 9   GRYLLDIRPNGRKGKRVRKVFDKKSVAVATERYIMANAEKREYIQGYRDR-RTLNDLLEL 67

Query: 78  Y-RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF 136
           +          A   R    +  +++       D  K+     RS   +    PSSA ++
Sbjct: 68  WWMYHGQHRRKAEEDRKQLCNIINELGADMQAVDLDKLKIIAWRSQKIAAGLKPSSANRY 127

Query: 137 LTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195
           +  +  +F    R   + A +P   +         +   +++++        EG   R+A
Sbjct: 128 MNRLSGMFTVLKRIGLWDAEHPVRGISILYVSPREMAFLSQKEVALLLDTL-EGDYWRVA 186

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF 255
               L +G R S++C+   + + +N  +    K G   TV +     + +     G    
Sbjct: 187 L-LCLSTGARWSEACKLRGEQIVHNRVTFLETKNGRKRTVPISQAVCEAIRTRETGN--L 243

Query: 256 FINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKT 315
           F    ++      F +  K         ++AH +R   A+     G     L    G  T
Sbjct: 244 FEVKYRE------FCLALKRVKPDLPKGQAAHVLRHTFASHFVMNGGNIIALQKILGHAT 297

Query: 316 VDQAETYTKGA 326
           + Q   Y   A
Sbjct: 298 IQQTMAYAHFA 308


>gi|320173160|gb|EFW48374.1| Integrase [Shigella dysenteriae CDC 74-1112]
          Length = 376

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 60/377 (15%), Positives = 115/377 (30%), Gaps = 64/377 (16%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKR-------- 58
           L P+  K   R+ K+ + +R     +       +        +       ++        
Sbjct: 14  LSPYFDK---RNNKVYWRYRHPITGKNHGLGSIDQKLAETIAAEANSRLARQQMEQMLSL 70

Query: 59  -EYINSPRKKPTTLKWLISEYRKS----AHWGSLAVNSRISFESYFDQIIRKSGDFDYRK 113
            E I S     +T+   ++ YRK        G + +N+     +       + G      
Sbjct: 71  QEKIISDTGGSSTITIFLNNYRKIQQERYENGEIKLNTLKQKAAPLRVFDERFGTRPLDV 130

Query: 114 ITTKHIRSGVESRKHTPSSAIQ--FLTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTE 169
           IT K + S +E  K    + +   F   +  +F+ A +   V    NP  S ++P+    
Sbjct: 131 ITVKDVVSVLEEYKARGHNRMGQIFRKVLIDVFREAQQTGDVPPGFNPAESAKKPQV-RI 189

Query: 170 GIRPWTKEDMQQ-FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
             +  T ++    + +   +G   +      L +G R SD C+     +++    ++ QK
Sbjct: 190 SRQRLTFDEWMMIYNAAEKDGYFLQRGMLLALMTGQRLSDICKMQFSDIRDGYLHVEQQK 249

Query: 229 TGTIITVE-----------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265
           TGT I +                        L    +         K           + 
Sbjct: 250 TGTRIAIPLALRCDKLNLTLDDVVSSCRDCVLSPWLLHHHHAKGTAK-------RGGMVK 302

Query: 266 ATQFSIWFKAKA-------TKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
               ++ FK             G   S H  R  S  +  + G     L    G      
Sbjct: 303 PATLTVAFKKARDSVDYNWRANGTPPSFHEQRSLSERLFREQGVDTKIL---LGHSNQKM 359

Query: 319 AETY--TKGADRIRLGI 333
            + Y   +G +  +L I
Sbjct: 360 TDIYNDARGKEWKKLVI 376


>gi|288957708|ref|YP_003448049.1| phage integrase family protein [Azospirillum sp. B510]
 gi|288910016|dbj|BAI71505.1| phage integrase family protein [Azospirillum sp. B510]
          Length = 416

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 47/335 (14%), Positives = 100/335 (29%), Gaps = 37/335 (11%)

Query: 10  FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
           +V + R R G+   Y    HG       P            L     + E   + +K   
Sbjct: 42  YVLQYRNREGQSRRYTIGKHGS------PWTPELARNEAERLLRRVAEGEDPQTEKKAAR 95

Query: 70  TLKWLISEYRKSAHWGSLAVNSRIS----FESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
           T    ++       +    V+          ++ ++++   G     ++  + I + ++ 
Sbjct: 96  TPDATLTVAAVFETFMQRHVSLTRVETEYRGAFRNEVLPYWGSRAIDRVERRDIIAMLDR 155

Query: 126 RKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
                 P  A +    +R  F W V ++ +A +PC  V  P  + +  R  + ++++  +
Sbjct: 156 IVDRGVPMRANRVFAYVRKFFNWCVSRDLIAASPCTGVRPPMPERDRDRVLSDDEVRVLR 215

Query: 184 SFWSEGSQPRLAF-EFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIITVELP 238
                   P   F   LL +  R ++        L  +           K G    + L 
Sbjct: 216 LAAETLDWPFGPFVILLLLTAQRLNEVAGMRWSELDLDAALWTLPAERAKNGQAHHIPLS 275

Query: 239 DGFMKLLAMTPI--GKETFFINNDKQKMNATQFSIW---------FKAKATKAGV----- 282
              + L+   P     +  F       ++    +            + +A + G      
Sbjct: 276 PAAVDLIRSLPRLAHSDFVFTTTGATPISGFSRAKRRLDAAMLSVLRKEAEERGEYPDAV 335

Query: 283 ----NKSAHGVRKFSATISADAGATAHELMATYGW 313
                   H +R+ + T  A  G   H        
Sbjct: 336 VTLSEWRFHDIRRTATTGMAQMGIAPHIADRILNH 370


>gi|241992552|gb|ACS73620.1| IntI1 [uncultured bacterium]
          Length = 337

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/306 (14%), Positives = 94/306 (30%), Gaps = 62/306 (20%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129
           ++ + R+   +   ++ +  ++  +    IR  G      + +  + + +      RK +
Sbjct: 16  VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75

Query: 130 PSSAIQFLTSMRVLFK--WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            S+  Q L ++   +         ++       + RP+         T +++ +   F  
Sbjct: 76  VSTHRQALAALLFFYGKVLCTDLPWL-----HEIGRPRPSRRLPVVLTPDEVVRILGFL- 129

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
           EG   RL  + L  +G+R S+  +  V+     +    ++  K      + LP+     L
Sbjct: 130 EGEH-RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSL 188

Query: 246 AMTPIGKETFFINN---------------------------------------------D 260
                    +++ +                                              
Sbjct: 189 REQLSRARAWWLKDQAEGRSGVTLPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVR 248

Query: 261 KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           +  M    F   FK    +AG+ K  + H +R   AT S  +G     +    G   V  
Sbjct: 249 RHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATASLRSGYDIRTVQDLLGHSDVST 308

Query: 319 AETYTK 324
              YT 
Sbjct: 309 TMIYTH 314


>gi|229520176|ref|ZP_04409603.1| integrase [Vibrio cholerae TM 11079-80]
 gi|229342770|gb|EEO07761.1| integrase [Vibrio cholerae TM 11079-80]
          Length = 389

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 44/266 (16%), Positives = 83/266 (31%), Gaps = 19/266 (7%)

Query: 93  ISFESYFDQIIRKSGDFDYRKIT--TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQ 150
             +  + +    +   +         +H          + ++A  +   +R     A R 
Sbjct: 125 HRYHRHAELTFEQVDKYFLEGFRHYLQHEAMTKSDTGLSRNTACSYFNKIRAALNQAQRD 184

Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210
             +  NP   V+  K +       T ++++            R AF F   +GLR SD  
Sbjct: 185 RIIRDNPVEQVKSIKAERTQRTYLTLDEVKALTKAECRYDVLRRAFLFSCTTGLRWSDIH 244

Query: 211 RAGVQHLQN-----NIFSIKTQK----TGTIITVELPDGFMKLLAMTPIGKETFFINNDK 261
           +     ++              K       +  ++LPD  ++LL +   GK T       
Sbjct: 245 KLVWGEIELFAHGHYRIIFSQIKLKNSGNGLQYLDLPDSAVRLLNLENRGKPT---ERVF 301

Query: 262 QKMNATQFSI-WFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           + +    +S       A +AG+ K  + H  R   A      G   + L    G   +  
Sbjct: 302 KGLRYDSYSNVALVQWAIRAGITKHVTFHAGRHTFAVNQLARGLDIYSLSRLLGHSELRT 361

Query: 319 AETYTKGADRIRLGIKNSRRISSVVD 344
            E Y    +  R   +  R    + D
Sbjct: 362 TEIYADILETRR--TEAMRTFPDIFD 385


>gi|301311826|ref|ZP_07217748.1| integrase [Bacteroides sp. 20_3]
 gi|300829928|gb|EFK60576.1| integrase [Bacteroides sp. 20_3]
          Length = 405

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 53/323 (16%), Positives = 112/323 (34%), Gaps = 40/323 (12%)

Query: 43  FIPAYMS-ALTGST-PKREYINSPRKKPTTLKWLISEYRKSAHW------GSLAVNSRIS 94
           F   Y    L G     R  +N  + K  T K L + +++             A  +   
Sbjct: 77  FYQIYQDLELEGKIISARAIVNRYQGKDETFKTLYNVFKEHNDNCRKLIGTDYADITVRR 136

Query: 95  FESYFDQIIR------KSGDFDYRKITTKHIRSGVESRKH----TPSSAIQFLTSMRVLF 144
           +++    ++       K  D   R++  + +R      K       ++ I+++   + + 
Sbjct: 137 YDNCLKYLMELVKRDYKVDDMLLREVNGELVRKFDLYLKAEKHCAQNTVIRYMKCFKKVI 196

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ---PRLAFEFLLY 201
             A+  E++  NP   ++  + +    +  ++ ++ +      +  +    R  F F +Y
Sbjct: 197 NLAIANEWLTKNPFAGIKFHEVEVNK-QFLSQAEINRIWQKEFKIERLELVRDVFIFCVY 255

Query: 202 SGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVELPDGFMKLLAMTPI-----G 251
           +GL   D      +H+  +           +KT  +  + L     ++L           
Sbjct: 256 TGLAFIDVYNLRSEHISEDSNGNLWIVKAREKTNNLCNIPLLSIPKQILDKYKDNPYCLD 315

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG-ATAHELM 308
           K T       QKMN+     + K  A   G+ K  + H  R   A++ A A   +   + 
Sbjct: 316 KGTLLPVPCNQKMNS-----YLKEIADLCGIKKNLTTHTARHSFASVIALANNVSLPNVA 370

Query: 309 ATYGWKTVDQAETYTKGADRIRL 331
              G  +    + Y K  D+  L
Sbjct: 371 KMLGHSSTRMTQHYAKVLDQTIL 393


>gi|294500323|ref|YP_003564023.1| putative tyrosine recombinase XerC-like protein [Bacillus
           megaterium QM B1551]
 gi|294350260|gb|ADE70589.1| probable tyrosine recombinase XerC-like protein [Bacillus
           megaterium QM B1551]
          Length = 283

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 40/273 (14%), Positives = 97/273 (35%), Gaps = 29/273 (10%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGV---ESRKH 128
           LI ++ +       + N+  ++ +  +Q      S      ++T  ++++ +   ES   
Sbjct: 11  LIDDFSQWLIESGKSDNTIKTYRAVLNQFHEWLLSEGRHLDQVTKNNVQTYMINLESNNK 70

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE---GIRPWTKEDMQQFKSF 185
           + S+  +   ++ V  ++  + E V      ++ER +++       +     ++ +  S 
Sbjct: 71  SASTIEKAFVTISVFARFLEKPEIVQ-----NIERKRKEKNNEVVPQSLEASELDRLLSE 125

Query: 186 WSE--GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----NNIFSIKTQKTGTIITVELP- 238
             +    +       LL++G+R S+ C    + ++    +    I+  K      V L  
Sbjct: 126 VKQQGNLRDIAIVYTLLHTGVRVSEICALNHKDVEINKSDGFLIIRNAKGCKKRFVPLST 185

Query: 239 ---DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSAT 295
              +   K +       E  F++N  ++M+        K        N + H +R     
Sbjct: 186 EARNSLKKYIDSLDSNHEALFVSNFDRRMSPRTVQYMLKKY------NVNPHKLRHTFCH 239

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADR 328
                G     +    G   V+  + Y K + R
Sbjct: 240 ELVKKGIDIATVAELAGHSDVNVTKRYLKSSTR 272


>gi|261217851|ref|ZP_05932132.1| tyrosine recombinase xerD [Brucella ceti M13/05/1]
 gi|261321299|ref|ZP_05960496.1| tyrosine recombinase xerD [Brucella ceti M644/93/1]
 gi|260922940|gb|EEX89508.1| tyrosine recombinase xerD [Brucella ceti M13/05/1]
 gi|261293989|gb|EEX97485.1| tyrosine recombinase xerD [Brucella ceti M644/93/1]
          Length = 309

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/272 (15%), Positives = 93/272 (34%), Gaps = 32/272 (11%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHT---PSSAIQFLTS 139
              A N+  S+    +    +      +  +  T HIR  +++       P+S  + L++
Sbjct: 20  RGAAQNTLESYRRDLEAAAEELAAKGVNLAEAETGHIRMTLDTMAAQGFAPTSQARRLSA 79

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS------------ 187
           +R  F++   + +   +P   ++ PK++    +  + E++ +     +            
Sbjct: 80  LRQFFRFLYSEGFRQDDPTGFLDAPKKQKPLPKIMSVENVGKLLDRAALEANEAAEPGER 139

Query: 188 -EGSQPRLAFEFLLYSGLRCSDSCRAGVQ-HLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
            +  +     E L  +GLR S+     V     ++ F +   K      V L       L
Sbjct: 140 IKALRLHALLETLYATGLRVSELVGLPVTVARTDHRFLLVRGKGSKDRMVPLSRKARDAL 199

Query: 246 AM-------TPIGKETFFIN---NDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKF 292
                     P   +  ++    ++   +    F+   K  A +AG+     S H +R  
Sbjct: 200 QKFLTLRDSLPGSDDNPWLFPAFSESGHLARQVFARELKGLAARAGLAASSVSPHVLRHA 259

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324
            A+     GA    +    G   +   + YT 
Sbjct: 260 FASHLLQNGADLRTVQQLLGHADISTTQIYTH 291


>gi|284989998|ref|YP_003408552.1| integrase family protein [Geodermatophilus obscurus DSM 43160]
 gi|284063243|gb|ADB74181.1| integrase family protein [Geodermatophilus obscurus DSM 43160]
          Length = 371

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 58/365 (15%), Positives = 125/365 (34%), Gaps = 46/365 (12%)

Query: 18  HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS--PRKKPTT----- 70
           HG++  Y      R + L    +         A T    +R    +   R +P T     
Sbjct: 11  HGRVRVYPDPAGYRAVCLYRDWDGATRQVQRQAKTKGAAERALAVALRDRGRPGTGHEIT 70

Query: 71  ----LKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKIT----TKHIRS 121
               +  L +++   +     + ++  ++    D+ ++   G    R+++     +H+ +
Sbjct: 71  PDTKVADLAAKWF--SELEGKSPSTMQAYRDRLDRQVLPALGSVRVRELSVGLLDRHLAA 128

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER-PKRKTEGIRPWTKEDMQ 180
              S  H P+ A    + +  +   A R + +  NPC  V R P +     R  T ++++
Sbjct: 129 VRAS--HGPALAKMTKSVISGMCGLACRHDALKANPCRDVARIPSQTRRAPRALTADEVR 186

Query: 181 QFKSFWSEGSQPRLA-----FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII-- 233
             +++ SE +  R         F++ +GLR  ++C      +  +  ++    T   +  
Sbjct: 187 SVRAWLSEDATARERDMPDLVAFMVATGLRIGEACAVSWPDVDLDADTVTVTGTVLRVKG 246

Query: 234 ---------------TVELPDGFMKLLAMTPIGKETFFINNDKQKMN-ATQFSIWFKAKA 277
                           +ELP   + LL          F     +K+          +   
Sbjct: 247 QGLVVSQPKSMAGERVLELPSWCVALLRRRGPSSGPVFPAPRSRKLRDPNNTRRALREAF 306

Query: 278 TKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGIKN 335
              G+   ++H  RK  AT+  +AG +A       G       +  Y     R     + 
Sbjct: 307 HAMGMPGVTSHAFRKTVATLMDEAGLSARSAADQLGHAKPSVTQDVYYGRRRRATGAAQV 366

Query: 336 SRRIS 340
             +++
Sbjct: 367 LEQLA 371


>gi|212702804|ref|ZP_03310932.1| hypothetical protein DESPIG_00836 [Desulfovibrio piger ATCC 29098]
 gi|212673666|gb|EEB34149.1| hypothetical protein DESPIG_00836 [Desulfovibrio piger ATCC 29098]
          Length = 447

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 117/403 (29%), Gaps = 94/403 (23%)

Query: 24  YFRKGHGRRIRLPYPHESTFIP------------------------AYMSALTGSTPKRE 59
            +R G G+RI       S                              M A+     +RE
Sbjct: 37  RYRAGEGKRIHESLGWTSEGWTVAKAVALLRELKENIRTGKRPQSLREMRAMAEEQKQRE 96

Query: 60  YINSPRKKPT--TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITT 116
              + R K    T + L   Y     W      S        +  I+   GD   + IT 
Sbjct: 97  AQLASRAKIEGLTFRELAEYY---GRWCLQNRASGAQVCQILEMHILPVLGDVPAKDITP 153

Query: 117 KHI----------RSGVESRKHTPSS------AIQFLTSMRVLFKWAVR---------QE 151
           + +          R      K+TP +       +  L ++R +F +A+            
Sbjct: 154 QDVAELGRIVSAKRPLSGRNKNTPGACLSAQTVLHILKTVREVFNFALETPAPGAPGTML 213

Query: 152 YVAINPC------LSVERPKRKTEGIRPWTKEDMQ---QFKSFWSEGSQPRLAFEFLLYS 202
           +   NP        ++  PK  +  +R  +  ++     F+    E  +      F L +
Sbjct: 214 FSGTNPAILSRRNRAIVLPKTDSRRLRVLSDTEITELLAFRGRREEYGELHDMILFSLDT 273

Query: 203 GLRCSDSCRAGVQHLQNNIFSIKT----------QKTGT-------IITVELPDGFMKLL 245
           GLR  +      +    +  +I+            K G         +  E  +   + L
Sbjct: 274 GLRAGELVNLRCESCDADSGTIRVLVGAKDSLRSTKGGETRILRAGRLYPESLNMLRERL 333

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---------KSAHGVRKFSATI 296
                G    F   D ++ +A   +   +    K G N            H +R   AT 
Sbjct: 334 GRLKTG--FLFPGPDGRERDANGLNRAMRRIMDKLGFNDGVTDPRNRVVWHTLRHTFATR 391

Query: 297 SADAGATAHELMATYGWKTVDQAETYTK--GADRIRLGIKNSR 337
             +AG   + L    G  +V   E Y      D+ R  +  + 
Sbjct: 392 MLEAGLDIYALKTLMGHASVTTTEIYLHICDMDKRRAALAKAE 434


>gi|270157652|ref|ZP_06186309.1| phage integrase family site-specific recombinase [Legionella
           longbeachae D-4968]
 gi|269989677|gb|EEZ95931.1| phage integrase family site-specific recombinase [Legionella
           longbeachae D-4968]
          Length = 409

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 63/321 (19%), Positives = 124/321 (38%), Gaps = 23/321 (7%)

Query: 24  YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAH 83
           Y   GH   + L    +  FI   +   TG  PK        +   T+K  I  +    +
Sbjct: 51  YMIIGHYPEMSLAE-AKKKFIDLRVIRRTGINPKLVTKKEEEQAKYTVKEFILNWYT--N 107

Query: 84  WGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSM 140
           +           + + +  II   GD + +KI TK I   ++   ++ +P  A + L+++
Sbjct: 108 YIERHRKQPQQIKQHINADIIPSLGDIELQKIQTKDITKELDKIVKRGSPVHANKVLSTI 167

Query: 141 RVLFKWAVRQEYVAINPCLSV---ERPKRKTEGIRPWTKEDMQQFKSFW-----SEGSQP 192
           +  F +AV +  +AINP +++   +   ++    R  T ++++    F      +   Q 
Sbjct: 168 KQAFNYAVSRGELAINPAVNIRARDIGGQEKPRDRFLTLDEIKILWEFLNSDLSAISLQI 227

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSI--KTQKTGTIITVELPDGFMKLLAMT 248
           + + + LL +G+R  +   A       QN++++I  K  KTG ++ V L +  + +L   
Sbjct: 228 KNSLKLLLLTGVRFGELRIAKWSEFDFQNSMWTIPAKNTKTGIVMHVHLTELVISILKEL 287

Query: 249 P--IGKETFFINNDK-QKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGA-T 303
                 E      D    ++             +  +   + H +R+  AT   +A    
Sbjct: 288 YNCSEGEYVISGADGINAISDKALPKAVIRIQDRVNIPQWTPHDLRRTFATQLGEALNID 347

Query: 304 AHELMATYGWKTVDQAETYTK 324
              +    G K      TY K
Sbjct: 348 PVVIEKCLGHKMPKIMATYNK 368


>gi|214027192|gb|ACJ63266.1| IntI1 integrase [Escherichia coli]
          Length = 337

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 41/306 (13%), Positives = 92/306 (30%), Gaps = 62/306 (20%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129
           ++ + R+   +   ++ +  ++  +    IR  G      + +  + + +      RK +
Sbjct: 16  VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75

Query: 130 PSSAIQFLTSMRVLFK--WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            S+  Q L ++   +         ++       + RP+         T +++ +   F  
Sbjct: 76  VSTHRQALAALLFFYGKVLCTDLPWLQ-----EIGRPRPSRRLPVVLTPDEVVRILGFL- 129

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
           EG   RL  + L  +G+R S+  +  V+     +    ++  K      + LP+     L
Sbjct: 130 EGEH-RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSL 188

Query: 246 AMTPIGKETFFINN---------------------------------------------D 260
                    +++ +                                              
Sbjct: 189 REQLSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVR 248

Query: 261 KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           +  M    F   FK    +AG+ K  + H +R   AT    +G     +    G   V  
Sbjct: 249 RHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVST 308

Query: 319 AETYTK 324
              Y  
Sbjct: 309 TMIYXH 314


>gi|209551174|ref|YP_002283091.1| site-specific tyrosine recombinase XerD [Rhizobium leguminosarum
           bv. trifolii WSM2304]
 gi|209536930|gb|ACI56865.1| tyrosine recombinase XerD [Rhizobium leguminosarum bv. trifolii
           WSM2304]
          Length = 317

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 49/274 (17%), Positives = 83/274 (30%), Gaps = 34/274 (12%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTK-----HIRSGVESRKHTPSSAIQFLTS 139
              AVN+  S+E   D +         R             + +  +    SS  + L +
Sbjct: 20  RGAAVNTLQSYERDLDDVHAFLTGRSVRLTEAASADLAAYLASLARKGFKASSQARRLAA 79

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-------GSQP 192
           MR  +K+   +     +P   ++ PK+     +    E++ +  S           G   
Sbjct: 80  MRQFYKFLYAEGLRTDDPTGILDAPKKGRPLPKTMGVEEVGKLLSQAEAEAGDAAPGQLQ 139

Query: 193 RLAFEFL----LYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLL-- 245
           RL    L      +G+R S+      + L     F +   K      V L    +  L  
Sbjct: 140 RLRMLALLELLYATGMRVSELVSLPARVLDQEGRFLMIRGKGNKERLVPLSQSAISALKS 199

Query: 246 -----------AMTPIGKETFFINNDKQKM-NATQFSIWFKAKATKAGVN---KSAHGVR 290
                      A  P      F    K+       F+   K  A +AG+     S H +R
Sbjct: 200 YGRLLAAENAAAKNPQESPWLFPAASKEGYLPRQVFARDLKNLAIRAGLTPSMISPHVMR 259

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              A+     GA    +    G   +   + YT 
Sbjct: 260 HAFASHLLANGADLRVVQELLGHSDISTTQIYTH 293


>gi|152988581|ref|YP_001350694.1| integrase [Pseudomonas aeruginosa PA7]
 gi|150963739|gb|ABR85764.1| integrase [Pseudomonas aeruginosa PA7]
          Length = 332

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 40/325 (12%), Positives = 86/325 (26%), Gaps = 35/325 (10%)

Query: 15  RTRHGKIIY---YFRKGH-GRRIRLPYPHESTFIPAYMS---ALTGSTPKREYINSPRKK 67
             R     +   ++  G  GRRIR       +    Y     A+ G T +          
Sbjct: 2   TVRKDGKTWTADFYENGRSGRRIRKKGFATKSAAIRYEQDFFAVKGETGRPLDDR----- 56

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR- 126
              L  L+  +          +       +  + + ++ G+    +  +       + R 
Sbjct: 57  ---LSDLVKVWY---ALHGCTLKDGKQRLARCEALAKRLGNPLAFEFDSLAWARYRQRRL 110

Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
               P +       +  +F   +R   +   NP   V + K     +   + + + +   
Sbjct: 111 TGVKPETVNHEQRYLSAVFSELIRLGSWHKENPLGKVRQIKTDQVELTFLSLDQVARLLE 170

Query: 185 FWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
                +           L +G R  ++       +          K     +V +PD   
Sbjct: 171 ECKASTNNHTYPVALLCLATGARWEEAESLTRGAVHGGKVHYHRTKNRQSRSVPIPDELE 230

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISAD 299
           +L+         F +               F+    + G     +  H +R   A+    
Sbjct: 231 RLI---------FKVGMPGSGRLFMSCRAAFRCAYQRCGFQTPGQMTHILRHTFASHYMM 281

Query: 300 AGATAHELMATYGWKTVDQAETYTK 324
            G     L    G  ++     Y  
Sbjct: 282 GGGDILALQRILGHSSITMTMRYAH 306


>gi|254718076|ref|ZP_05179887.1| site-specific tyrosine recombinase XerD [Brucella sp. 83/13]
 gi|306837278|ref|ZP_07470164.1| tyrosine recombinase XerD [Brucella sp. NF 2653]
 gi|306407650|gb|EFM63843.1| tyrosine recombinase XerD [Brucella sp. NF 2653]
          Length = 307

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/272 (15%), Positives = 94/272 (34%), Gaps = 32/272 (11%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHT---PSSAIQFLTS 139
              A N+  S+    +    +      +  +  T HIR  +++       P+S  + L++
Sbjct: 18  RGAAQNTLESYRRDLEAAAEELAAKGVNLAEAETGHIRMTLDTMAAQGFAPTSQARRLSA 77

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS------------ 187
           +R  F++   + +   +P   ++ PK++    +  + E++ +     +            
Sbjct: 78  LRQFFRFLYSEGFRQDDPTGILDAPKKQKPLPKIMSVENVGKLLDRAALEANEAAEPGER 137

Query: 188 -EGSQPRLAFEFLLYSGLRCSDSCRAGVQ-HLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
            +  +     E L  +GLR S+     V     ++ F +   K      V L     + L
Sbjct: 138 IKALRLHALLETLYATGLRVSELVGLPVTVARTDHRFLLVRGKGSKDRMVPLSRKAREAL 197

Query: 246 AM-------TPIGKETFFIN---NDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKF 292
                     P   +  ++    ++   +    F+   K  A +AG+     S H +R  
Sbjct: 198 QKFLTLRDSLPGSDDNPWLFPAFSESGHLARQVFARELKGLAARAGLAASSVSPHVLRHA 257

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324
            A+     GA    +    G   +   + YT 
Sbjct: 258 FASHLLQNGADLRTVQQLLGHADISTTQIYTH 289


>gi|310827527|ref|YP_003959884.1| Site-specific recombinase XerD [Eubacterium limosum KIST612]
 gi|308739261|gb|ADO36921.1| Site-specific recombinase XerD [Eubacterium limosum KIST612]
          Length = 399

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 56/297 (18%), Positives = 95/297 (31%), Gaps = 49/297 (16%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFES----YFDQIIRKSGDFDYRKITTKHIRSGVESRK 127
           KWL  EYRKSA   +     +   E     YFD+   K G      +        +E+ K
Sbjct: 76  KWL--EYRKSAIAITTYHAYKTRIERKIAPYFDERKMKLGSLKAAHVQE--FYIHLENEK 131

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT--EGIRPWTKEDMQQFKSF 185
             P +   +   M     +AVR E +  NP   V RP  +   E    + + ++++    
Sbjct: 132 LKPCTIKCYHELMNTALNYAVRSELILANPLRLVYRPAVRKAIEPHSCYNELELEKLFKV 191

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSI------------------- 224
            SEG+   +      + GLR S+           +NN+ +I                   
Sbjct: 192 -SEGTLLEIPILLGAFYGLRRSEIIGLKWSAVDFENNLININHTIVPVYSESSYIYVKEN 250

Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKE---------------TFFINNDKQKMNATQF 269
           +T+   +  T+ L D     L      +                   +N   +       
Sbjct: 251 RTKTISSRRTLPLIDPVKGKLIKLKTIQMNNRLVCGNAYEDTEGYICVNEVGKLYTPNWL 310

Query: 270 SIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTK 324
           +  F     K G+     H +R   A+I    G     +    G   +   A+ Y+ 
Sbjct: 311 TTSFGKLLKKHGLRHIRFHDLRHSCASILLRKGVQMKYIQEWLGHSNIATTADIYSH 367


>gi|304436275|ref|ZP_07396258.1| phage integrase family integrase/recombinase [Selenomonas sp. oral
           taxon 149 str. 67H29BP]
 gi|304370732|gb|EFM24374.1| phage integrase family integrase/recombinase [Selenomonas sp. oral
           taxon 149 str. 67H29BP]
          Length = 328

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/262 (14%), Positives = 90/262 (34%), Gaps = 14/262 (5%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129
           L++++ ++      +  +   +E     ++      +    TT+ +RS +    E    +
Sbjct: 53  LVTKFIEAKRIEGCSSKTLHYYEKSIRTMLAHV-QKEVVHTTTEDLRSYLTSYQERGGLS 111

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
             +       +   F W   ++Y+  +P   + R K        ++ E+++  +    E 
Sbjct: 112 RVTVDNVRRILSSFFAWLEDEDYIVKSPVRRIHRVKTAENIKATYSDEELEAMRDSCHE- 170

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG-----FMKL 244
           S+     + L  +G+R  +  R     +  N         G    +   D          
Sbjct: 171 SRDLAMIDMLASTGMRVGEMVRLNRSDVDFNERECVVLGKGNKERIVYFDARTKIHLQAY 230

Query: 245 LAMTPIGKETFF--INNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG 301
           L     G+   F  + + + +++ +      +    + G+ K   H  R+  AT + D G
Sbjct: 231 LESRTDGEAALFVGLRSPRSRLSISGIESRLRTLGRRIGMEKVHPHKFRRTLATRAIDKG 290

Query: 302 ATAHELMATYGWKTVDQAETYT 323
               +L    G K +D    Y 
Sbjct: 291 MPIEQLQQLLGHKRIDTTLHYA 312


>gi|257891586|ref|ZP_05671239.1| integrase [Enterococcus faecium 1,231,410]
 gi|261206697|ref|ZP_05921392.1| predicted protein [Enterococcus faecium TC 6]
 gi|289567110|ref|ZP_06447504.1| predicted protein [Enterococcus faecium D344SRF]
 gi|294615943|ref|ZP_06695773.1| integrase [Enterococcus faecium E1636]
 gi|314940596|ref|ZP_07847729.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133a04]
 gi|314943369|ref|ZP_07850141.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133C]
 gi|314949883|ref|ZP_07853186.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0082]
 gi|314953769|ref|ZP_07856636.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133A]
 gi|314993029|ref|ZP_07858422.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133B]
 gi|314998266|ref|ZP_07863135.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133a01]
 gi|257827946|gb|EEV54572.1| integrase [Enterococcus faecium 1,231,410]
 gi|260079055|gb|EEW66751.1| predicted protein [Enterococcus faecium TC 6]
 gi|289161094|gb|EFD09000.1| predicted protein [Enterococcus faecium D344SRF]
 gi|291591192|gb|EFF22871.1| integrase [Enterococcus faecium E1636]
 gi|313587746|gb|EFR66591.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133a01]
 gi|313592459|gb|EFR71304.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133B]
 gi|313594245|gb|EFR73090.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133A]
 gi|313597927|gb|EFR76772.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133C]
 gi|313640228|gb|EFS04809.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133a04]
 gi|313643767|gb|EFS08347.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0082]
          Length = 373

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 57/341 (16%), Positives = 121/341 (35%), Gaps = 50/341 (14%)

Query: 45  PAYMSA-LTGSTPKREYINSPRKKPTTLKWL---ISEYRKSAHWGSLAVNSRISFESYFD 100
            A+  A L  +    E I    + P T   L     E  K       +  +   + S   
Sbjct: 38  QAWNQANLLLNEKIAEKIKRNEELPLTFGELKTKWDEKYK-PTVKESSYRTTQVYLSLIS 96

Query: 101 QIIRKSGDFDYRKITTKHIRSGVE----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAIN 156
           + I+   D   + + +  I+  ++     +  + +  I   T   ++FK+A R+  +  N
Sbjct: 97  KYIKD--DVLVKNVNSNLIQDMLDYYYFEKNLSYNYVIHLKTFTGMIFKFANRRYGLKYN 154

Query: 157 PCLSV---------ERPKRKTEGIRPWTKEDMQQFKSFWSE-GSQPR--LAFEFLLYSGL 204
           P   V         E  K++ +G    +KE++Q   S       Q R  L  +FL  +GL
Sbjct: 155 PVNGVSLARKPKTNEEIKKEKDGY--LSKEEVQMIASKQKSSHQQSRYSLITKFLFLTGL 212

Query: 205 RCSDSCRAGVQHLQNNIFSI------------KTQKTGTIITVELPDGFMKLLAMTP--- 249
           R  +           N  ++             T+ TG+  T+EL     +++       
Sbjct: 213 RYGELISLTESDYDGNKITVSGTYDYELKIKTTTKNTGSYRTIELSSNAKEIIDQLIEEN 272

Query: 250 -----IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302
                   +  FI+ +   ++   ++   +A + +  ++K  S+H +R    ++  + G 
Sbjct: 273 KLIKNNKDKYIFISKNGNPISIQAYNQSLRAVSKELNIDKKVSSHMLRHSHISLLTELGI 332

Query: 303 TAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSV 342
               +M   G +      + YT       +  +   ++  +
Sbjct: 333 PLKAIMDRVGHEDSKTTLKIYTHTT--KNMQNQLVEKLGKI 371


>gi|239828409|ref|YP_002951033.1| integrase [Geobacillus sp. WCH70]
 gi|239808702|gb|ACS25767.1| integrase family protein [Geobacillus sp. WCH70]
          Length = 292

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/276 (13%), Positives = 89/276 (32%), Gaps = 32/276 (11%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF------DYRKITTKHIRSGVESRK 127
           L+  +++       A  +  S+        R  G+          + +    +  +    
Sbjct: 4   LLDAFKQWLTEEGKAPKTIESYVGDIKSYQRFLGEKAVSDQQPLSRFSFVRYKQHLLDEG 63

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT--------EGIRPWTKEDM 179
              ++  + + S++V   +  ++  V      S  + KR            +   ++E++
Sbjct: 64  FAVATINKKINSLKVYNDFLQKKGIV----SESYIQLKRDRVQIAAGSEHVVTALSEEEV 119

Query: 180 QQF----KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIIT 234
           ++     +       + +L    LLY+G+R S+     +  +     ++    K G +  
Sbjct: 120 EKLLFYLEDRTKVSLRNKLIAYLLLYTGVRVSELVNIKLTDIDVLTATLMIRGKGGKVRE 179

Query: 235 VELPDGFMKLLAMTPIG---------KETFFINNDKQKMNATQFSIWFKAKATKAGVNKS 285
           + L    ++L+    IG          E   ++   +KM+      W    +   G+   
Sbjct: 180 ISLRQDLVQLIKEYQIGERQESRFRESEYLLVSQRSKKMHRDAVRNWLANISKDIGIKLH 239

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
            H  R   AT     G     +    G  TV+    
Sbjct: 240 PHLFRHTFATRLLRKGVDLTTVSKLTGHSTVNMTAK 275


>gi|310828816|ref|YP_003961173.1| phage integrase family site specific recombinase [Eubacterium
           limosum KIST612]
 gi|308740550|gb|ADO38210.1| phage integrase family site specific recombinase [Eubacterium
           limosum KIST612]
          Length = 379

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 53/360 (14%), Positives = 107/360 (29%), Gaps = 45/360 (12%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
           +P    +++ ++G I Y++R  H     L  P +                K E       
Sbjct: 1   MPRTKYRKKIKNGTIYYFYRLRHK---NLRTPRDLYGRTVTELEDKIRRLKNELDRGVTS 57

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII-----RKSGDFDYRKITTKHIRS 121
           +       + ++    H  +    ++  ++  F++ +           D   +  +   S
Sbjct: 58  EKAYFGDYMEKWLNDVHLNNKKQATKTKYKGLFERYVLPYPVANIQLKDLTALDIQEHYS 117

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP--KRKTEGIRPWTKE-- 177
            + S   +  +       +    ++A  Q  + I+   S+  P  K+K E  R  ++   
Sbjct: 118 KLVSDGISKPTLKTLSVVINPCIRYAFTQGKILIDFSRSIVLPEAKKKQEKSRRASQALS 177

Query: 178 -DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------- 229
            DM+        G++  +     L SGLR  +        +      I   KT       
Sbjct: 178 LDMENALIKACAGTKWEVFILTDLNSGLRRGEIMALTWDDIDLEKGIIDVNKTYDQRNKD 237

Query: 230 ---------GTIITVELPDGFMKLLAMTPIGKE--------------TFFINNDKQKMNA 266
                     +I  V +P    + L    + +                 F N+    M A
Sbjct: 238 QPIGPPKTENSIRQVPIPRFLAEKLKQHKVEQNKRRLLLSNKYKNLNLVFPNDFGNYMAA 297

Query: 267 TQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTK 324
           T         A + G+   + H  R   AT   +       + +  G   +      YT 
Sbjct: 298 TTVGRALIDFAKEIGLESLNLHDFRDTYATRLYEKTKDIKMVQSLLGHSDIATTANIYTH 357


>gi|306831022|ref|ZP_07464184.1| phage integrase family site-specific recombinase [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
 gi|304427045|gb|EFM30155.1| phage integrase family site-specific recombinase [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
          Length = 385

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 56/356 (15%), Positives = 108/356 (30%), Gaps = 53/356 (14%)

Query: 11  VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
           V   R   GK   YF+ G   R              + + +       E     +    T
Sbjct: 19  VRIYRVIDGKRHDYFKSGFKTRREAK---------EHEAIIYHKKLTGELTELLKASERT 69

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYF--DQIIRKSGDFDYRKITTKHIRSGVESRKH 128
            + +  E+ K+  +      +            I+   G+F   KIT    +  +  +  
Sbjct: 70  FEEVFEEWFKT--YQDTVERTTSVRTDDMFRLHILPILGNFKISKITPWQCQEFITEKGK 127

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE-GIRPWTKEDMQQFKSFWS 187
           T  +  Q  +    +F +AV+ + +A NP   +  PKR  +     +  +++ +F +   
Sbjct: 128 TFRNIKQVKSYANQVFNFAVKMKLIAENPMRDITLPKRDHKQSDNFFNVDELHEFLAIVK 187

Query: 188 EGS--QPRLAFEFLLYSGLRCSDSCRAGVQHLQ----------------NNIFSIKTQKT 229
                +    F  L YSGLR  +        +                       +T+  
Sbjct: 188 AEESYKDYALFRLLAYSGLRKGELYSLRWSDIDFDKQILSITKNLGRIRGKAVEKRTKNR 247

Query: 230 GTIITVELPDG----FMKLLAMTPIGKETF-------------FINNDKQ--KMNATQFS 270
            ++  + L D       +    +   K                F++ D +   +     +
Sbjct: 248 FSVRQIPLDDETISILREWKVRSKKEKGQLSVTPLIENDYIFTFVDRDGKIQPLYQDYIN 307

Query: 271 IWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
              K    K  + K S HG R   AT+  + G          G  +     +TY+ 
Sbjct: 308 YNLKRIIDKHNLKKISPHGFRHTHATLMIEIGVDPVNAARRLGHASSQMTLDTYSH 363


>gi|256059893|ref|ZP_05450079.1| site-specific tyrosine recombinase XerC [Brucella neotomae 5K33]
          Length = 309

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 49/291 (16%), Positives = 92/291 (31%), Gaps = 31/291 (10%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFES----YFDQIIRKSGDFD----YRKITTKHIRS 121
           L     E+ KS      L+ N+ I++E     +   +    G+         +    +RS
Sbjct: 9   LAAAREEWLKSLKTMRRLSDNTLIAYERDTRQFLQFLTGHLGEPPSLKEIGNLRIADLRS 68

Query: 122 GVESRKHTPSSAIQF---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
            + +R++  + A      L  +R L +   ++  V      ++  P++     +P T +D
Sbjct: 69  FLANRRNDGAGARTLGRGLAGVRSLLRHLEKRGLVNAAGASAMRAPRQPKSLPKPLTADD 128

Query: 179 MQ-------QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKT 229
            +       Q        ++       L   GLR S++       L +        T K 
Sbjct: 129 ARRVVSADGQMAEEPWIAARNAAVLTLLYGCGLRISEALGLSGDALSDPSARSMTITGKG 188

Query: 230 GTIITVELPDGFMKLLAMTPI-------GKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
                V L     K +A             +  F       ++A       +      G+
Sbjct: 189 SKTRLVPLLPAVHKAVAQYRALCPFDLSAGQPLFRGAKGGPLHAAIIQREMQKLRAGLGL 248

Query: 283 N--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
               + H +R   AT     G     +    G  ++   + YT G D  RL
Sbjct: 249 PDSATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQVYT-GVDTQRL 298


>gi|295107573|emb|CBL05116.1| Site-specific recombinase XerD [Gordonibacter pamelaeae 7-10-1-b]
          Length = 364

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 53/315 (16%), Positives = 99/315 (31%), Gaps = 47/315 (14%)

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGV 123
           R    T +  +  Y +      L   +  S E    +++I   G      IT++ I    
Sbjct: 52  RSTSMTFEQFVKVYAEDVR-PRLRETTWRSKEYMISEKLIPFFGKMRVVDITSRDIMDWQ 110

Query: 124 ES---------RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK-TEGIRP 173
            +         +K++ +        +  +   AV+   +  NP     R   K    ++ 
Sbjct: 111 NTLLKAKDKNGKKYSETYIRTVENQLSAILNHAVKHYGLPSNPLQKAGRVGEKQGNEMKF 170

Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK----- 228
           WT E+  +F     +  +   A+E L + GLR  +      + +     +I   K     
Sbjct: 171 WTTEEYLKFSEQVVDRPEMFYAYEILYWCGLREGELLALTAKDIDTKNRTISVTKSYSRL 230

Query: 229 -----------TGTIITVELPDGFMKLLA------MTPIGKETFFINNDKQKMNATQFSI 271
                        +   + LP    + L         P   E  F             + 
Sbjct: 231 NGRDIIGKPKTKKSERVIALPRFLAQELQEYMEMEREPNENERLF------PFTKYALNN 284

Query: 272 WFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
             K  A  AGV +   H +R    ++  + G TA  +    G ++V     Y        
Sbjct: 285 TLKTAAKLAGVKEIRVHDLRHSHVSLLINLGFTAVAIADRMGHESVHITYRYAH------ 338

Query: 331 LGIKNSRRISSVVDS 345
           L     R ++ V+D+
Sbjct: 339 LFPNQQRNMADVLDA 353


>gi|254168548|ref|ZP_04875392.1| site-specific recombinase, phage integrase family protein
           [Aciduliprofundum boonei T469]
 gi|197622603|gb|EDY35174.1| site-specific recombinase, phage integrase family protein
           [Aciduliprofundum boonei T469]
          Length = 305

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/213 (15%), Positives = 73/213 (34%), Gaps = 21/213 (9%)

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK- 183
            R  +P +   ++  +   F +  R+  + +N     +  + +T+   P T E +++   
Sbjct: 55  ERGVSPKTLNNYVKQLNRYFSF--RRVDIHLN---YFKEYRDETDMRIP-TDEQVKKLLD 108

Query: 184 ---SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN------IFSIKTQKTGTIIT 234
               ++S   + R     L  +GLR ++      + L  +      +  ++  K      
Sbjct: 109 LNWKYYSVDLRNRTILALLFATGLRVNEVINLDWKDLYYDNVQGVWMLHVRMGKGRKPRK 168

Query: 235 VELPD----GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGV 289
           V +P        +   + P             +++   F    K  A +AG+    AH  
Sbjct: 169 VPVPPKVIKMLFEWRKIQPKTDPNAIFTTPGGRISHAYFRKIVKVAAERAGIPWFHAHLA 228

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETY 322
           R + A    + G     +    G  ++   + Y
Sbjct: 229 RHWRAIKFLEEGVNLETIRRYLGHSSLKTTQIY 261


>gi|145306755|ref|YP_001144419.1| integrase/recombinase [Magnetospirillum gryphiswaldense MSR-1]
 gi|144901521|emb|CAM78243.1| integrase/recombinase [Magnetospirillum gryphiswaldense MSR-1]
          Length = 302

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/284 (13%), Positives = 91/284 (32%), Gaps = 22/284 (7%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS-- 131
           L     +       +  ++ ++     +     G            +  +E R+      
Sbjct: 13  LRQRLIEDMTLRRFSRETQRNYIRDVGRFAAFLGRSPDTATAEDVRQFQLEQRESGVPVP 72

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           +    ++++R  F   + +     +    + R     +     ++E++ +  +  +    
Sbjct: 73  TMNSIVSALRFFFTHTIDR----PDLARKLMRISHPRQLPMVLSREEVARLLNATTCLKH 128

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ--KTGTIITVELPDGFMKLLAMT- 248
              A      +GLR ++     V+ + +    I+ +  K G      L    + LL    
Sbjct: 129 Q-AALSVAYGAGLRVAEVSALKVRDIDSERMLIRVERGKGGRSRNAMLSPDLLTLLRQWW 187

Query: 249 PIGKETFFINNDK---------QKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATIS 297
             G++   ++ D          + ++  Q        A  A + K    H +R   AT  
Sbjct: 188 AFGRQQGVMHRDGWLFPGQHTMKPISTRQLHRIVVEAAQAAEIAKRVGPHTLRHSFATHL 247

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADR-IRLGIKNSRRIS 340
            + G     +    G   ++    YTK A R +R  +    R++
Sbjct: 248 LEDGVDIRVIQVLLGHSKLENTALYTKVATRTVRTVVSPLDRLA 291


>gi|196250844|ref|ZP_03149530.1| integrase family protein [Geobacillus sp. G11MC16]
 gi|196209682|gb|EDY04455.1| integrase family protein [Geobacillus sp. G11MC16]
          Length = 304

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/290 (14%), Positives = 88/290 (30%), Gaps = 39/290 (13%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----KHT 129
           ++ EY         + N+ IS+ +  +Q ++         +T+  IR  ++      +  
Sbjct: 1   MLHEYETYLQEKGFSPNTVISYLNDVNQFLKDLHLRPGDYVTSADIRKWIQQMLNPAEGK 60

Query: 130 P---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP---WTKEDMQQFK 183
           P   S+  + L S+R  + WAV    +  NP   ++  K   E        T+E+ +   
Sbjct: 61  PLAISTINRRLNSLRSFYAWAVEHHKLEQNPMKDIQDLKSADEDNEKIMWLTEEEFEDLL 120

Query: 184 SF-------------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
                            +  + R     L Y+GLR  +     +  L   +  I+    G
Sbjct: 121 HRMRKKPVQSRGVDPEEKYRRDRAVVYLLTYAGLRVEELSNLKLTDLDLEMKRIRIVGKG 180

Query: 231 TII-TVELPDGF-----------MKLLAMTP--IGKETFFINNDKQKMNATQFSIWFKAK 276
             + TV + +              ++    P        F +    K +        ++ 
Sbjct: 181 MKVRTVPISNILLAELEDWLKFRAEMTKKKPHVAQSPYVFYSQRSPKFSVRGIQRMIESY 240

Query: 277 ATKAGVNKSAHGVRKFSATISADA-GATAHELMATYGWKTVDQAETYTKG 325
           +       + H  R         A      ++    G   +     Y K 
Sbjct: 241 SLP-NKKLTPHMFRHTFCKWMLKATNNDIEKVRRLAGHSNIATTSRYLKD 289


>gi|169838713|ref|ZP_02871901.1| recombinase [candidate division TM7 single-cell isolate TM7a]
          Length = 222

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 42/212 (19%), Positives = 77/212 (36%), Gaps = 23/212 (10%)

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPR 193
           +++++  +K+      V  +P   V   KR+       T E++++         EG Q R
Sbjct: 5   VSAIKAFYKFCYLNRAVEKDPAGMVRSLKREYRSPEILTLEEIKKIVDSCPNMPEGMQNR 64

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT--QKTGTIITVELPDGFMKLLA----- 246
           L  +FL+ +G R S+     ++ L+N  +       K      V + D     +      
Sbjct: 65  LIIKFLIATGARISEILNLEIKDLENKKYEFIKVLGKDSKYRIVPIYDSLENEIKNYLDV 124

Query: 247 -----MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISAD 299
                         F N  ++K     F    K  A  AG+ K+   H  R   A I   
Sbjct: 125 YRPKLKNANDSFKIFPNARREK-----FWKDLKNIAKNAGIEKNVYPHIFRYSLAEILLG 179

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRL 331
             A    +   +G+ ++   ET T   ++ +L
Sbjct: 180 DNADTRIVQEIFGYASITTTETCTH-VEKSKL 210


>gi|168208010|ref|ZP_02634015.1| putative integrase/recombinase [Clostridium perfringens E str.
           JGS1987]
 gi|170660693|gb|EDT13376.1| putative integrase/recombinase [Clostridium perfringens E str.
           JGS1987]
          Length = 284

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/288 (12%), Positives = 86/288 (29%), Gaps = 28/288 (9%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF-DYRKIT----------TKHIRSGV 123
           I ++        L+  +   +E   +          + + +                + +
Sbjct: 5   ILKFLNIESNNGLSEGTLKKYEIDLNLFFEYMEHKQNIKSLNSVTGEEGQKIIDRYINYL 64

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
           +   + PS+    + S+    K+ +  E+       +++   +        ++ + ++  
Sbjct: 65  KREGYKPSTINGKIVSINKFLKY-LGHEFK----AKAIKVQNKMYIENII-SEREFERLI 118

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
               +  +       L  +GLR S+     +   +     I   K G    + L     K
Sbjct: 119 RACKDNKRDYTIIMTLANTGLRISELLSLTINDPKKESIYI-YGKGGKGRELILSPQLKK 177

Query: 244 LL------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSA 294
           +L            K   F       +     +        K G++K     H  R F A
Sbjct: 178 ILNDYIDNYRMKTHKRLLFTGERG-ALKRNAINKMLLKYQKKTGISKEKMHPHSFRHFYA 236

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
                 G     +    G + ++    YTK + +  + I N   ++S+
Sbjct: 237 KYLISKGIGLDIIQTLLGHENINTTSIYTKSSKKELVSIINRTFLASI 284


>gi|126666597|ref|ZP_01737575.1| Tyrosine recombinase XerC [Marinobacter sp. ELB17]
 gi|126628985|gb|EAZ99604.1| Tyrosine recombinase XerC [Marinobacter sp. ELB17]
          Length = 324

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 34/250 (13%), Positives = 82/250 (32%), Gaps = 17/250 (6%)

Query: 92  RISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFLTSMRVLFKWAV 148
           +  ++ Y     ++  +  +R + +  IR  V           S  + L+++R  + + +
Sbjct: 50  QEGYQEYSLNHSQEHSEISWRSLNSHDIRRYVAHLSRASLNGRSIARHLSAIRRFYHYLL 109

Query: 149 RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK---SFWSEGSQPRLAFEFLLYSGLR 205
           R+  V  +P  ++  PK           + +       +      +    FE L  +GLR
Sbjct: 110 REGLVDNSPAEAIRAPKSGRRLPVVADVDQLTHLLDAQADDPLELRDVCIFELLYSAGLR 169

Query: 206 CSDSCRAGVQHLQNNIFSIKTQKTGTIITV-----ELPDGFMKLLAMTP----IGKETFF 256
            ++     +  ++     +K    G    V              LA+ P     G++  F
Sbjct: 170 LAEVAALDLGTVELAAAQVKVTGKGNKQRVLPVGRPALAALQAWLAVRPGLAGAGQQALF 229

Query: 257 INNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWK 314
           ++    +++               G ++    H +R   A+   ++      +    G  
Sbjct: 230 VSRRGDRLSHRSIQARLARWGLVKGADQKLHPHMLRHSFASHLLESSGDLRAVQELLGHA 289

Query: 315 TVDQAETYTK 324
            +   + YT 
Sbjct: 290 DIATTQVYTH 299


>gi|120601140|ref|YP_965540.1| phage integrase family protein [Desulfovibrio vulgaris DP4]
 gi|120561369|gb|ABM27113.1| phage integrase family protein [Desulfovibrio vulgaris DP4]
          Length = 400

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 44/280 (15%), Positives = 94/280 (33%), Gaps = 21/280 (7%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           T+  L   Y ++    +     + S   Y   +     + D R      +R  +E++  +
Sbjct: 96  TIGGLWDFYLEAHQERAGTPADK-SRAKYLAGLFDSYPE-DLRTGHVDALRRKIEAQGMS 153

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV---ERPKRKTEGIRPWTKEDMQQFKSFW 186
           P S    L  +R + ++   +   ++ P  ++   + P          T E  +      
Sbjct: 154 PQSVKHVLALLRRVLRYCEGRGLCSL-PGRALLIFDLPPVDNAKTENLTHEQARALLEAL 212

Query: 187 SEGSQPRLAFE--FLLYSGLRCSDSCRAGVQHLQ--NNIFSIK--TQKTGTIITVELPDG 240
                  LA      L +G+R           L   N   +++  T K+G   ++ + D 
Sbjct: 213 DADPDQNLAAMVRLALLTGMRRGALFGLQWGDLDFRNARITLRGATAKSGKTSSIPMTDD 272

Query: 241 FMKLLAMTPIGKETFFI--NNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSAT 295
             K+L      +  +     N  +++   +F    +    +AG+    +  HG+R   A+
Sbjct: 273 ARKVLLGVQRTESLYVFPGRNGGKRVECRRFLNRIR---LRAGLPDGFRPLHGLRHTFAS 329

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGAD-RIRLGIK 334
             A +G +  ++              Y+   D   RL   
Sbjct: 330 WLASSGVSLLQIKDLLTHGDYRSTTRYSAFFDHEQRLAAS 369


>gi|107099659|ref|ZP_01363577.1| hypothetical protein PaerPA_01000677 [Pseudomonas aeruginosa PACS2]
          Length = 289

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 31/253 (12%), Positives = 70/253 (27%), Gaps = 22/253 (8%)

Query: 84  WGSLAVNSRIS---FESYFDQIIRKSGD---FDYRKITTKHIRSGVESRKHTPSSAIQFL 137
           W  L   +        +  + + ++ G+   F++  +     R    + +  P +     
Sbjct: 20  WYDLHGCTLKDGKQRLARCEALAKRLGNPLAFEFDSLAWARYRQRRLT-EVKPETVNHEQ 78

Query: 138 TSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL-- 194
             +  +F   +R   +   NP   V + K     +   + E + +        +      
Sbjct: 79  RYLSAVFSELIRLGSWHKENPLGKVRQIKTDQVELTFLSLEQVARLLEECKASTNNHTYP 138

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254
                L +G R  ++       +          K     +V +PD   +L+         
Sbjct: 139 VALLCLATGARWEEAESLTRGAVHGGKVHYHRTKNRQSRSVPIPDELERLI--------- 189

Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAGATAHELMATY 311
           F +               F+    + G     +  H +R   A+     G     L    
Sbjct: 190 FKVGMPGSGRLFMSCRAAFRCAYQRCGFQTPGQMTHILRHTFASHYMMGGGDILTLQRIL 249

Query: 312 GWKTVDQAETYTK 324
           G  ++     Y  
Sbjct: 250 GHSSITMTMRYAH 262


>gi|41408850|ref|NP_961686.1| hypothetical protein MAP2752 [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41397209|gb|AAS05069.1| hypothetical protein MAP_2752 [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 381

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 41/270 (15%), Positives = 85/270 (31%), Gaps = 9/270 (3%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
           +  Y        L+  +         ++ R +       +    I   +      P S  
Sbjct: 23  LQRYEIWMKGRGLSARTITDSMLTLRRLERVT-RRPAHAVAALAISRFLADEALGPRSRY 81

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
            +   +   F+W   ++    N    + RP+      RP T   +Q   +      + R+
Sbjct: 82  TYHVQLAGFFRWLANEDGAP-NIMAQIPRPRLPRSVPRPITTGQLQALLAV-RMHKRTRV 139

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKE 253
                 ++GLR  +  +   Q +  +  ++    K G   T+ L    ++     P    
Sbjct: 140 MILLAAFAGLRAHEIAKVRGQDVDPDARTLHVVGKGGHAATIPLHPVLVEAAETMPRHGW 199

Query: 254 TFFINND--KQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMAT 310
            F  N+    Q + +            +AG+   +AH +R +  T    +G         
Sbjct: 200 WFPANSRRPGQHVLSRGVVDAIGDAMRRAGIPGGTAHRLRHWYGTTLVASGTDLRTAQTL 259

Query: 311 YGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
                +     YT+  D  R  I+   R++
Sbjct: 260 LRHSNLASTAIYTEVYDDRR--IEAIDRLT 287


>gi|307828928|gb|ADN95150.1| integrase [Staphylococcus aureus]
          Length = 381

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 42/306 (13%), Positives = 98/306 (32%), Gaps = 47/306 (15%)

Query: 84  WGSLAVNSRI--SFESYFD----QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFL 137
           W     N+    +++         I+    D   +KIT ++ +  +       S      
Sbjct: 77  WLEQYQNTVRESTYQRVLTLFDTAILEHFQDVPIKKITVQYCQKVINKWNKKYSDIKAIR 136

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRK----TEGIRPWTKEDMQQFKSFWSEGSQPR 193
                +FK+AV  + +  NP    + P++K        + ++ ++++QF +F  +     
Sbjct: 137 IYTSNVFKYAVSLKIILDNPFAHTKAPRKKEAQQDASTKYYSSDELKQFLTFVEDDPLYY 196

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-----------------GTIITVE 236
             F  L ++G R  +        +     +I   KT                  +  T+ 
Sbjct: 197 AIFRTLAFTGFRRGELMALTWNDIDFTRQTISINKTCARGANYKLVIQEPKTKSSHRTIS 256

Query: 237 LPDGFMKLL---------------AMTPIGKETFFIN-NDKQKMNATQFSIWFKAKATKA 280
           + D    +L                 T    +  F    D +++     +        K 
Sbjct: 257 IDDKTASVLKSWRTHQRVESLKYGHSTSDKHQHVFTTVRDNKQLYPEHCNKALDLICEKN 316

Query: 281 GVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRR 338
              +   HG R    ++  +AG +  E+    G   +    + Y    ++ R   + + +
Sbjct: 317 SFKRIKVHGFRHTHCSLLFEAGLSIQEVQDRLGHGDIKTTMDIYAHVTEKQR--DQVADK 374

Query: 339 ISSVVD 344
            +  ++
Sbjct: 375 FAKYIN 380


>gi|296532590|ref|ZP_06895295.1| tyrosine recombinase XerC [Roseomonas cervicalis ATCC 49957]
 gi|296267081|gb|EFH13001.1| tyrosine recombinase XerC [Roseomonas cervicalis ATCC 49957]
          Length = 307

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 48/283 (16%), Positives = 86/283 (30%), Gaps = 24/283 (8%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD-YRKITTKHIRSGVESRKHT 129
           L WL  E R S H  +        F  +  + +    DF   + +    +R+ +  R   
Sbjct: 15  LDWLEKERRASRHTLAAYGADLAEFLGFLTRHLGAEPDFAALQALRPADLRAFLAERAMR 74

Query: 130 PSSAI----QFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGIRPWTKE------- 177
                    + L ++R   ++ A R   V       +  PK      RP T +       
Sbjct: 75  DGVGNATRARQLAAIRGFLRFLAKRHGLVPQAIA-GLRGPKVVPPAPRPLTPDQALDVTR 133

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-QNNIFSIKTQKTGTIITVE 236
           D    ++      +    F  L   GLR S++    +    +         K      V 
Sbjct: 134 DAGSVENSTVLALRDSALFTLLYGCGLRISEALALNLADAPRAGAGLKVRGKGDKERVVP 193

Query: 237 LPDGFMKLLAMTPI------GKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHG 288
           +     + +A               F+     +++A       +      G+    + H 
Sbjct: 194 VLPAVEQAIAAYLRLRGGGEPDAPLFLGARGGRLDAGMAQRALRNYRRLVGLPESATPHA 253

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           +R   AT    AGA    +    G  ++   + YT   D  RL
Sbjct: 254 LRHSFATHLLTAGADLRSIQELLGHASLSTTQRYT-SVDSARL 295


>gi|253569681|ref|ZP_04847090.1| transposase [Bacteroides sp. 1_1_6]
 gi|251840062|gb|EES68144.1| transposase [Bacteroides sp. 1_1_6]
          Length = 308

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/288 (12%), Positives = 98/288 (34%), Gaps = 36/288 (12%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFD-YRKITTKHIRSGVESRK 127
           T++ +   +R++     +  ++  ++    +  I+ K G+ +   +   +          
Sbjct: 5   TIREISDAWRENKR-PYVKQSTLAAYMLILENHILPKFGESNELHENDVQGFVLEKLEGG 63

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL-SVERP-KRKTEGIRPWTKEDMQQFKSF 185
            +  S    L  ++++ K+ V+ E++  N     ++ P     + +   +  + ++  ++
Sbjct: 64  LSMKSVKDILIVLKMVMKFGVKNEWM--NYYEWDIKYPTDVAGKKLEVLSVANHKKILNY 121

Query: 186 WSEG-SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSI------------------ 224
                S P L     L +GLR  + C      +   + I ++                  
Sbjct: 122 IQSHFSFPGLGIYISLSTGLRIGEICALKWSDINVYDGILTVNRTIERIYIIEGERKHTE 181

Query: 225 ----KTQKTGTIITVELPDGFMKLLAMTP--IGKETFFINNDKQKMNATQFSIWFKAKAT 278
                 +   +   + +    + +L      I  + + + ND++      +  ++K    
Sbjct: 182 LVINTPKTKNSCREIPINKELLTMLKPLKKVINDDYYILTNDERPTEPRTYRNYYKRLME 241

Query: 279 KAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
           K  + K   HG+R   AT   + G     +    G   +    + Y  
Sbjct: 242 KLDIPKLKYHGLRHSFATRCIEVGCDYKTVSVLLGHSNISTTLDLYVH 289


>gi|254453108|ref|ZP_05066545.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198267514|gb|EDY91784.1| phage integrase [Octadecabacter antarcticus 238]
          Length = 426

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/258 (14%), Positives = 82/258 (31%), Gaps = 15/258 (5%)

Query: 82  AHWGS--LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
            HW +  +A  +     +  + I +  G     K    +    ++  K TP  A +    
Sbjct: 143 PHWANKLVADITPHDVATLLNIIAQ--GRARPSKEKPNNRARKLQGAKPTPIRANRVGEV 200

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA--FE 197
           +R +F  A+   +   NP    ++ + +T   R  ++E++ +  +        R A    
Sbjct: 201 LRKMFTLAISWGWRTDNPATGFKK-RVETARERFLSQEEIGRLAAVLDAAEDQRAAGIIR 259

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSI----KTQKTGTIITVELPDGFMKLLAM----TP 249
             + +G R  +  +A  +     +        T K   I  + +      ++       P
Sbjct: 260 ICMLTGSRVGEVRQARFEQFNLELCIWSKPAATTKQRKIHRIPISADVAAIVRQRSVSVP 319

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMA 309
                 F  +   +        W   +      +   H +R   A++    GA+   +  
Sbjct: 320 RDNPWLFPGDVPGQPVKEIRRFWINVQREANLPDVRIHDLRHTFASLLVSGGASLEMIGR 379

Query: 310 TYGWKTVDQAETYTKGAD 327
             G   +   + Y    D
Sbjct: 380 LLGHTQMQTTQRYAHLMD 397


>gi|38232807|ref|NP_938574.1| putative phage integrase [Corynebacterium diphtheriae NCTC 13129]
 gi|38199065|emb|CAE48686.1| Putative phage integrase [Corynebacterium diphtheriae]
          Length = 408

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 55/337 (16%), Positives = 115/337 (34%), Gaps = 36/337 (10%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEY 78
           GK        +GR        E+       +A            +  K   TL  L   +
Sbjct: 30  GKRWQAVWIENGRE--ATKTFETRDEAELWAARAEVGKADGTWITKDKVDITLSDLWEPW 87

Query: 79  RKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGV---ESRKHTPSS-- 132
             S   G+++  ++  + SY++  I  + G      I    I + +    + K  P+S  
Sbjct: 88  IASK--GNISDKTKRDYLSYWNVHIRPQWGQTPCAHIQRSVINAWIPTLSTMKGVPASQP 145

Query: 133 -------AIQFLT-SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
                  A++ +   +  +   AV    +  NP  + + PK+K    R     ++ +   
Sbjct: 146 PRPLSESAMRKVGLIIHGILDLAVELGVIHQNPIRTGDLPKQKKSERRYLKITEVDELIR 205

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ------------NNIFSIKTQKTGTI 232
                 Q +L    L+ +GLR  ++    V+ L             +++    + KT   
Sbjct: 206 QAPT-EQAKLLLRVLIMTGLRPGEAKGLKVKDLDPVRGRLMIRRDVDDLGHEDSTKTRNH 264

Query: 233 ITVELPDGFMKLLAMTPIGKET---FFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHG 288
             V +    + LL     GK+       +   +    +++ + +K      G+ +   + 
Sbjct: 265 RDVPIGGEILLLLDRYAQGKDPDSWLIPDERGKVWTTSRWRVVWKNLCIWTGIGDLDTYE 324

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
           +R  +A+I+  AGA    +    G  +     + Y  
Sbjct: 325 LRHTAASIAIAAGADVKTVQLMLGHSSAAMTLDIYAH 361


>gi|146277269|ref|YP_001167428.1| site-specific tyrosine recombinase XerC [Rhodobacter sphaeroides
           ATCC 17025]
 gi|145555510|gb|ABP70123.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17025]
          Length = 306

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 40/255 (15%), Positives = 75/255 (29%), Gaps = 19/255 (7%)

Query: 101 QIIRKSGDFDYRKITTKHIRSGVE---SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINP 157
            +    G      +    +R+ +    +R     S  + L+++R    W   +E V    
Sbjct: 48  HLGEGYGLPALASVPHADLRAWMAHERARGLGARSLARSLSAVRQFTGWLAEREGVDATA 107

Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFK-------SFWSEGSQPRLAFEFLLYSGLRCSDSC 210
            LS   PK + +  RP ++ D +          +     ++       L   GLR S++ 
Sbjct: 108 VLSARGPKFRRKLPRPLSEGDAKALLLTVAEDGAEDWIRARDLAVVTLLYGCGLRISEAL 167

Query: 211 RAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI------GKETFFINNDKQKM 264
                            K      V       + +A               F       +
Sbjct: 168 GLPATAHPLPEVLRILGKGSKERLVPAIPAAREAVARYAALCPFDLTSGPLFRGARGGAL 227

Query: 265 NATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           N    +   +      G+    + H +R   AT   +AG     +    G  ++   + Y
Sbjct: 228 NPRLVAKVMERARATLGLPPTATPHALRHSFATHLLNAGGDLRAIQELLGHASLSTTQVY 287

Query: 323 TKGADRIRLGIKNSR 337
           T   D  RL    +R
Sbjct: 288 T-AVDGARLMEVYAR 301


>gi|294793172|ref|ZP_06758318.1| integrase/recombinase, phage integrase family [Veillonella sp.
           6_1_27]
 gi|294456117|gb|EFG24481.1| integrase/recombinase, phage integrase family [Veillonella sp.
           6_1_27]
          Length = 329

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/266 (13%), Positives = 85/266 (31%), Gaps = 14/266 (5%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ES 125
           T + L+  +  +      +  S   + +  D +  K  + + R+  T  +R+ +    + 
Sbjct: 50  TNEQLLERFLAAKRIEGCSEKSLAYYRTTIDAMTAKV-EKNVRETETDDLRTYLTEYQQE 108

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +  +  +       +   F W   ++Y+  +P   + + K        +T E +++ +  
Sbjct: 109 KNSSKVTVDNIRRILSSFFSWLEDEDYILKSPARRIHKVKAALTIKETYTDEALEKMRDS 168

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG----- 240
             E  +     + L  +G+R  +        +            G+   +   D      
Sbjct: 169 CEEP-RDLALIDMLASTGMRVGELVLLNRDDINFEERECVVFGKGSKERMVYFDARTKIH 227

Query: 241 FMKLLAMTPIGKETFFINNDKQK--MNATQFSIWFKAKATKAGVNK-SAHGVRKFSATIS 297
               L          F++       + +       +    K  + K   H  R+  AT++
Sbjct: 228 LQNYLQERTDDNPALFVSLRAPHERLQSGGVERRLRELGKKLDIEKVHPHKFRRTLATMA 287

Query: 298 ADAGATAHELMATYGWKTVDQAETYT 323
            D G    +L    G K +D    Y 
Sbjct: 288 IDKGMPIEQLQQLLGHKRIDTTLQYA 313


>gi|315615898|gb|EFU96524.1| integrase [Escherichia coli 3431]
          Length = 376

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 60/377 (15%), Positives = 115/377 (30%), Gaps = 64/377 (16%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKR-------- 58
           L P+  K   R+ K+ + +R     +       +        +       ++        
Sbjct: 14  LSPYFDK---RNNKVYWRYRHPITGKNHGLGSIDQKLAETIAAEANSRLARQQMEQMLSL 70

Query: 59  -EYINSPRKKPTTLKWLISEYRKS----AHWGSLAVNSRISFESYFDQIIRKSGDFDYRK 113
            E I S     +T+   ++ YRK        G + +N+     +       + G      
Sbjct: 71  QEKIISDTGGSSTVTIFLNNYRKIQQERYENGEIKLNTLKQKAAPLRVFDERFGTRPLDA 130

Query: 114 ITTKHIRSGVESRKHTPSSAIQ--FLTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTE 169
           IT K + S +E  K    + +   F   +  +F+ A +   V    NP  S ++P+    
Sbjct: 131 ITVKDVVSVLEEYKARGHNRMGQIFRKVLIDVFREAQQTGDVPPGFNPAESAKKPQV-RI 189

Query: 170 GIRPWTKEDMQQ-FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
             +  T ++    + +   +G   +      L +G R SD C+     +++    ++ QK
Sbjct: 190 SRQRLTFDEWMMIYNAAEKDGYFLQRGMLLALMTGQRLSDICKMQFSDIRDGYLHVEQQK 249

Query: 229 TGTIITVE-----------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265
           TGT I +                        L    +         K           + 
Sbjct: 250 TGTRIAIPLALRCDKLNLTLDDVVSSCRDCVLSPWLLHHHHAKGTAK-------RGGMVK 302

Query: 266 ATQFSIWFKAKA-------TKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
               ++ FK             G   S H  R  S  +  + G     L    G      
Sbjct: 303 PATLTVAFKKARDSVDYNWRANGTPPSFHEQRSLSERLFREQGVDTKIL---LGHSNQKM 359

Query: 319 AETY--TKGADRIRLGI 333
            + Y   +G +  +L I
Sbjct: 360 TDIYNDARGKEWKKLVI 376


>gi|312978150|ref|ZP_07789894.1| prophage integrase [Lactobacillus crispatus CTV-05]
 gi|310894868|gb|EFQ43938.1| prophage integrase [Lactobacillus crispatus CTV-05]
          Length = 402

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 61/387 (15%), Positives = 124/387 (32%), Gaps = 59/387 (15%)

Query: 9   PFVTKERTRHGKIIYYFRK--------GHGRRIRLPYPHESTFIPAYMSALTGSTP-KRE 59
           P +T+ + ++GK  +  R         G   ++                 L    P    
Sbjct: 10  PEITEYKLKNGKKFFRLRTYIGISPETGKAIKVTRSKLKSRKEAEEVRRELKAQGPGTIR 69

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119
                ++K  T++   + + +       +   R   E++ +QI  + G+     I+  H+
Sbjct: 70  KKLETKQKKITVRDAYNAWLEVMRNDVRSSTIRRIKETWKNQIEPEFGNTYISNISPDHV 129

Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-----PW 174
           +  V +      +       +  + K+A+ + +   +P   V  PK+     R      +
Sbjct: 130 QKYVNNLASKYVAYKIMANQLHRIIKYAIFRHWCDKDPFDFVIMPKKSAIASRDNTLNFY 189

Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYS-GLRCSDSCRAGVQHLQ--------------- 218
             +++++F     + S     +   + S G R  ++       +                
Sbjct: 190 ELDELKRFLDVTKKFSPMTYTYFLTVASLGCRRGEAFALNWSDIDFDKRTVKIERTVAID 249

Query: 219 -NNIFSIKTQKTGTIITVELPDGFMKLL-------AMTPIGKETFFINNDKQKMNATQFS 270
            N+  +I   K G   TV + D     L                 F       M ++Q  
Sbjct: 250 ENDKKTIDDVKNGIHHTVPMSDHLYTALKEYQNYCHKIGDNCPMPFHTKKGDYMWSSQSD 309

Query: 271 IWFKA-------KATKAGVNK-----------SAHGVRKFSATISAD--AGATAHELMAT 310
            W +A       +  +                + HG+R   AT+  D   G T  ++   
Sbjct: 310 TWIRAIYRYDANQCKEWNDKHPQDEKKPLRKITPHGLRHTLATLLYDGTNGITPKDIQFV 369

Query: 311 YGWKTVDQA-ETYTKGADRIRLGIKNS 336
            G KT   A   YT   ++ + GIK+S
Sbjct: 370 LGHKTPRTAMRIYTHVTEKQKKGIKSS 396


>gi|300924591|ref|ZP_07140553.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 182-1]
 gi|300419222|gb|EFK02533.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 182-1]
          Length = 334

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 56/311 (18%), Positives = 107/311 (34%), Gaps = 14/311 (4%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIP-AYMSALTGSTPKREYINSPRKKPTTLKWLISE 77
           G+ +   R    +  R+    +   +  A    +  +  KREYI   R +  TL  L+  
Sbjct: 9   GRYLLDIRPNGRKGKRVRKVFDKKSVAVATERYIMANAEKREYIQGYRDR-RTLNDLLEL 67

Query: 78  Y-RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF 136
           +          A   R    +  +++       D  K+     RS   +    PSSA ++
Sbjct: 68  WWMYHGQHRRKAEEDRKQLCNIINELGADMQAVDLDKLKIIAWRSQKIAAGLKPSSANRY 127

Query: 137 LTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195
           +  +  +F    R   + A +P   +         +   +++++        EG   R+A
Sbjct: 128 MNRLSGMFTVLKRIGLWDAEHPVRGISILYVSPREMAFLSQKEVALLLDTL-EGDYWRVA 186

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF 255
               L +G R S++C+   + + +N  +    K G   TV +     + +     G    
Sbjct: 187 L-LCLSTGARWSEACKLRGEQIVHNRVTFLETKNGRKRTVPISQAVCEAIKTRETGG--L 243

Query: 256 FINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKT 315
           F    ++      F +  K         ++AH +R   A+     G     L    G  T
Sbjct: 244 FEVKYRE------FCLALKRVKPDLPKGQAAHVLRHTFASHFVMNGGNIIALQKILGHAT 297

Query: 316 VDQAETYTKGA 326
           + Q   Y   A
Sbjct: 298 IQQTMAYAHFA 308


>gi|268319286|ref|YP_003292942.1| bacteriophage integrase [Lactobacillus johnsonii FI9785]
 gi|262397661|emb|CAX66675.1| bacteriophage integrase [Lactobacillus johnsonii FI9785]
          Length = 390

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 57/308 (18%), Positives = 108/308 (35%), Gaps = 49/308 (15%)

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGV 123
           ++K   +  L   + ++    +   ++    +  FD  II   G+    KIT   ++   
Sbjct: 66  KQKQIKVSELRDLWFENYKTQA-KESTANKNKQVFDNHIIPDFGNQYIDKITVAELQKWA 124

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-----PWTKED 178
           + +          +     LF++ +R  YV+ NP   +  PK+ +   R      +T+++
Sbjct: 125 DRKAKQIVKYRDAINEFNALFEYGIRLNYVSENPLKRIIIPKKTSRPRRDTEHNVYTRDE 184

Query: 179 MQQFKSFWSE-GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-------G 230
           + QF     E G      F+ L  +GLR S++     Q +  N  ++   KT        
Sbjct: 185 LNQFLEVAKEYGLVQYTYFKLLSSTGLRKSEALALTWQDIDLNNNTLSVNKTLAYGLGGK 244

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK---------------- 274
           TII         ++L ++   KE       KQK+ +++     K                
Sbjct: 245 TIIQSPKSPKSKRILPISDSLKEVLIDYKQKQKILSSKLFHTIKGTYLRMSKPDQWLNSI 304

Query: 275 ---------AKATKAGVN-------KSAHGVRKFSATIS-ADAGATAHELMATYGWKTVD 317
                      A K  +N        + HG R   AT+  A+       +    G + + 
Sbjct: 305 YAKDHQDKVKYAEKYNLNPLPDLKRITVHGFRHTFATLLIAETNVKPKTVQMLLGHENIQ 364

Query: 318 QA-ETYTK 324
              + YT 
Sbjct: 365 MTLDIYTH 372


>gi|262042628|ref|ZP_06015784.1| phage integrase family site-specific recombinase [Klebsiella
           pneumoniae subsp. rhinoscleromatis ATCC 13884]
 gi|259040062|gb|EEW41177.1| phage integrase family site-specific recombinase [Klebsiella
           pneumoniae subsp. rhinoscleromatis ATCC 13884]
          Length = 276

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 34/204 (16%), Positives = 62/204 (30%), Gaps = 18/204 (8%)

Query: 130 PSSAIQFLTSMRVLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           P +    L   R +F    R  ++ A NP  +V   K     +   T E+  +      +
Sbjct: 44  PRTVNLELAYFRAMFNELKRLDDWTAPNPLENVREFKIAEIELAWLTVEEAARLLEECEK 103

Query: 189 GSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
                L    +  L +G R  ++     + +     +    K      V + +   +LL 
Sbjct: 104 SKAEDLTMIVKICLATGARWGEAESLTGKQISPGKITFIKTKGKKNRAVPISEELYELLP 163

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS----AHGVRKFSATISADAGA 302
            +   K  F           T     F++   +AG+       +H +R   A+     G 
Sbjct: 164 KSRTSKPLF-----------TGCYSAFRSAIKRAGIELPDGQLSHVLRHTFASHFMMGGG 212

Query: 303 TAHELMATYGWKTVDQAETYTKGA 326
               L    G   +     Y   A
Sbjct: 213 NILVLQRILGHTDIKVTMRYAHFA 236


>gi|239931195|ref|ZP_04688148.1| putative integrase [Streptomyces ghanaensis ATCC 14672]
          Length = 420

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 67/392 (17%), Positives = 119/392 (30%), Gaps = 67/392 (17%)

Query: 14  ERTRHG-KIIYYFRK--GHGRRIRLPYPH-ESTFIPAYMSALTGSTPKREYINSPRKKPT 69
           +  RHG  + Y  R     G      +P  +     A+++ +     + +YI+ PR    
Sbjct: 24  KTERHGLGLRYRARYIGPDGTEKSKSFPDKQKRLADAWLTNIEADMARGQYID-PRAARI 82

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           T +     +  +     L   + +        +    G         +HIR      +  
Sbjct: 83  TFREYTDRWLAALT-TDLTSRAAVEGRLRLHAL-PYLGTRPIGSFQPEHIRDWNRQLEDA 140

Query: 130 PSSAIQ---FLTSMRVLFKWAVRQEYVAINPCL--SVERPKRKTEGIRPWTKEDMQQFKS 184
            +SA        ++  +   AV    +A NPC   SV+ P+     + PW+ E +  F  
Sbjct: 141 VASAQYRRLIFDAVSSVLNAAVDDRLLASNPCRVRSVKAPRPAPSRVHPWSAEQV--FDV 198

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQ-------------KTG 230
                 + R   +     GLR  +     V ++ +     ++ Q             K G
Sbjct: 199 RAGLPERYRAMVDLGAGCGLRQGEIFGLAVDNIGDLGWLYVRQQVKKVRGTLVFAPPKRG 258

Query: 231 TIITVEL----PDGFMKLLAMTPIGKETF-FINNDKQKMN-------ATQFSIW------ 272
            +  V L         + +A  P    T  ++     K+         +  +IW      
Sbjct: 259 KLRDVPLDLEVSAALREHMAAFPPVDVTLPWLTPTGPKVTHRLLFTSGSGAAIWSQAFND 318

Query: 273 --FKAKATKAGV--------------NKSAHGVRKFSATISADAGATAHELMATYGWKTV 316
             +K     AG+                  H +R F A++  DAG +   L    G    
Sbjct: 319 RAWKPALASAGIIPAPGKGERYAAAREHGMHALRHFYASVLLDAGESIKALSLYLGHSDP 378

Query: 317 D-QAETYTK----GADRIRLGIKNSRRISSVV 343
                 YT        R R  I    R +   
Sbjct: 379 GFTLRVYTHLMPSSETRTRKAISAMYRAAGHA 410


>gi|323344352|ref|ZP_08084577.1| integrase [Prevotella oralis ATCC 33269]
 gi|323094479|gb|EFZ37055.1| integrase [Prevotella oralis ATCC 33269]
          Length = 389

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 49/263 (18%), Positives = 95/263 (36%), Gaps = 26/263 (9%)

Query: 96  ESYFDQIIRKSG--DFDYRKITT---KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQ 150
           +   +  +R  G  D     I+       R  ++   + P++  + L  +  L   AV Q
Sbjct: 131 DKQLNSFVRSLGEEDIPLTAISIEFFDDYRFYLKKEGYAPATTNRHLCWLSRLMYRAVSQ 190

Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF--WSEGSQ-PRLAFEFLLYSGLRCS 207
             +  NP   V+    + +  R  +K D+++   F    EG++  R  F F ++SGL  +
Sbjct: 191 GTIRFNPFEEVKYEAVENK-PRFLSKGDVEKLLVFPLQDEGAELSRRMFLFSVFSGLAFA 249

Query: 208 DSCRAGVQHLQNN-----IFSIKTQKTGTIITVELPDGFMKLLAM----TPIGKETFFIN 258
           D        ++ N           QKT     + L     ++L+        G    F +
Sbjct: 250 DLQSLRASQIETNSEGKRYIRKTRQKTEVESLIPLHPIAEQILSRYTKEKSKGDYKIFPD 309

Query: 259 NDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTV 316
                M+  + S   KA     G+    + H  R    T++ +AG     +    G  ++
Sbjct: 310 T----MSKGKLSTHLKAVGLACGIRTPLTWHVGRHSFGTLTLEAGIPMESIAKMMGHSSI 365

Query: 317 DQAETYTKGADRIRLGIKNSRRI 339
              + Y +  D+      +  R+
Sbjct: 366 ASTQIYAQITDQK--ISSDMDRL 386


>gi|229101972|ref|ZP_04232686.1| Site-specific recombinase, phage integrase [Bacillus cereus
           Rock3-28]
 gi|228681555|gb|EEL35718.1| Site-specific recombinase, phage integrase [Bacillus cereus
           Rock3-28]
          Length = 384

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 45/325 (13%), Positives = 95/325 (29%), Gaps = 46/325 (14%)

Query: 49  SALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD 108
             +       +   S   K  +++ +   +  S    +L   S   F   F+ I      
Sbjct: 32  KEIVKKRQPHKRKTSKISKEDSVERVFERFVDSKVKQNLRPKSLNQFLLMFNSIKAFHET 91

Query: 109 FD-----YRKITTKHIRSGV----------ESRKHTPSSA----------IQFLTSMRVL 143
            +        ITT  I   V          +   + P SA             +  ++  
Sbjct: 92  QNAHTFYMTDITTNFISDWVYWLKNEYVRFDGHAYVPESAQTVGLADETISSRIKRLKTF 151

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-------EGSQPRLAF 196
             W +RQE ++ NP    E  ++    I   + +++               +  +  +  
Sbjct: 152 INWCLRQEIISKNPFNKFEGFRKDNTQIDILSVDELNNLLKMAKSYSNKSFKHFRDYVLL 211

Query: 197 EFLLYSGLRCSDSCRAGVQHLQ----NNIFSIKTQKTGTIITVELPDG--------FMKL 244
             L+    R +++      ++       I      K+    TV L +           + 
Sbjct: 212 HLLIDGMFRITEALLLSPSNIDHTNRAVIIQSNNAKSRKSRTVPLSNKTYRLLIQLLEEN 271

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGA 302
            A      +  F++   + ++        +  A +A + K    H +R  +AT    +  
Sbjct: 272 EAFEDDVDDLIFLSLSGRMLSKNNVLRDMRKYAIEAKIKKRFYLHLIRHSAATHYLSSSG 331

Query: 303 TAHELMATYGWKTVDQAETYTKGAD 327
               L    G   +     Y+  AD
Sbjct: 332 DVESLRKILGHADLRTVLIYSHLAD 356


>gi|41057046|ref|NP_957649.1| putative site-specific recombinase/integrase [Bacillus
           methanolicus]
 gi|40074231|gb|AAR39395.1| putative site-specific recombinase/integrase [Bacillus methanolicus
           MGA3]
          Length = 284

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 44/273 (16%), Positives = 100/273 (36%), Gaps = 26/273 (9%)

Query: 74  LISEYRKSAHWGSLAVNSRISFE---SYFDQIIRKSGDFDYRKITTKHIRSGVESRK--- 127
           +I E+ +       + N+   +    S F +   +S D ++ K+  ++++  +   +   
Sbjct: 1   MIDEFERYLLEEGKSENTIKGYIQSVSGFLKWFSESKDVEFTKLHRENVKEYISFLRTVK 60

Query: 128 -HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE-----DMQQ 181
              P +    L ++    ++ V          +  ++   K +     +       D+++
Sbjct: 61  NAKPKTINTKLNALVKFNEFLVETNVQQD--MVLTKKDYMKAQQQYA-SLAKVKLKDVEK 117

Query: 182 FKSF--WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVEL 237
           F+     S   +       L Y+GLR S++    +Q     +   ++++ K      V +
Sbjct: 118 FRQLVLDSGNKRNYALVTLLAYAGLRISEALNLKMQDFNLVSREITVRSGKGDKFRVVFM 177

Query: 238 PDGFMKLLAM-------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVR 290
            D     L           I  +  F++N  Q +N T  +  FK  +   G + + H +R
Sbjct: 178 NDKVKAALQSWLKERKEKGIEHDFLFVSNRNQPLNRTTINKLFKEYSEPIGKDITPHDLR 237

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYT 323
            F  + +   G + HE+    G   +     YT
Sbjct: 238 HFFCSHAISRGLSVHEVANQAGHSNIHTTLLYT 270


>gi|85711580|ref|ZP_01042638.1| Site-specific recombinase XerC [Idiomarina baltica OS145]
 gi|85694732|gb|EAQ32672.1| Site-specific recombinase XerC [Idiomarina baltica OS145]
          Length = 302

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/273 (13%), Positives = 82/273 (30%), Gaps = 28/273 (10%)

Query: 85  GSLAVNSRISFESY-------FDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFL 137
             LA  +  +++          D+   +      R I  + +            S    L
Sbjct: 18  RGLAQLTIKNYQRLTGIDIEQLDRQGVEHAHQLTRSIFERLLVGWR-RDGLGERSIALKL 76

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE---GSQPRL 194
           ++ R   ++ +  +++  +P   ++ PK      +    + +        +     +   
Sbjct: 77  SAWRTFVQYMLDYQHLNDDPLSGLKAPKIPKRLPKNLDVDSISHLLELPLDDELAIRDSA 136

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV------------ELPDGFM 242
             E L  SGLR ++     +  +      ++    G+   +                   
Sbjct: 137 MMELLYSSGLRLAELVSLDMDSIDLRYGQLRVVGKGSKTRIVPVGKIAIKAIQRWLKVRA 196

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADA 300
             LAM P  +   FI+   Q+++             + GV  N   H +R   A+   ++
Sbjct: 197 NWLAMRP--EVALFISQRNQRISQRTVQQRLNFWGKQQGVVGNLHPHKLRHSFASHMLES 254

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
                 +    G   +   + YT   D  RL  
Sbjct: 255 SGDLRAVQELLGHANLSTTQVYTH-LDFKRLAE 286


>gi|67923785|ref|ZP_00517248.1| Phage integrase:Phage integrase, N-terminal SAM-like [Crocosphaera
           watsonii WH 8501]
 gi|67854373|gb|EAM49669.1| Phage integrase:Phage integrase, N-terminal SAM-like [Crocosphaera
           watsonii WH 8501]
          Length = 362

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 42/298 (14%), Positives = 80/298 (26%), Gaps = 68/298 (22%)

Query: 101 QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
            + R       R     + R  VE + +  ++    LT +R  +  AV +  +  NP L 
Sbjct: 52  HVQRLHPLEATRDDIKLYRRWLVEIQDYKCATIALKLTVVRRFYAGAVERGLILANPALG 111

Query: 161 VERPKRKTEGIRP---WTKEDMQQFKSFWSE-----GSQPRLAFEFLLYSGLRCSDSCRA 212
           ++ P+   +         + ++              G + R     ++  G R  +  RA
Sbjct: 112 IKPPRENIDPAERINYLEEPEVIGLLESLPTENTIGGLRDRFLVAVMVLEGCRTVEMHRA 171

Query: 213 GVQHL--QNNIFSIKTQKTGTIITVELPDGFMKLL-----------AMTPIGKETFFI-- 257
            +  +  +     I+     +   V L     KLL            +       F    
Sbjct: 172 CIGDIVKRGGDIGIRVSGKRSRRIVPLTPDLAKLLNKYLNARKRSGEVLNADTPLFIALD 231

Query: 258 -NNDKQKMNATQFSIWFKAKATKAGVN--------------------------------- 283
                 +++              AG+                                  
Sbjct: 232 KRTYGGRLSRRSIQRLIDKYLRAAGLKEQPKKNKGKKPASFQEYQPSNGEQQRPSQSASS 291

Query: 284 -----------KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
                       SAH +R  + T++  AG+   ++    G         Y   ADR R
Sbjct: 292 TSTKFQQPQRQLSAHSLRHTAGTLAIRAGSDLRQVQDLLGHADPRTTALYAHVADRWR 349


>gi|311233617|gb|ADP86471.1| integrase family protein [Desulfovibrio vulgaris RCH1]
          Length = 395

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 48/318 (15%), Positives = 92/318 (28%), Gaps = 21/318 (6%)

Query: 26  RKGHGRRIRL-PYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISE-YRKSAH 83
           R      IRL   P     +   M          E   +     TT+     + Y  S+ 
Sbjct: 61  RARITENIRLGRRPQSLAEMREMMREAREQAAIEERRAA--NAATTMNEFWEKHYLPSST 118

Query: 84  WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLTSM 140
                   +     Y   I    GD     +T   I        +   + ++    L  +
Sbjct: 119 LHKTPQTMKTESGYYAKWIRPVLGDSALSDLTPPLIEQVASNAMTAGRSAATIRHLLAII 178

Query: 141 RVLFKWAVRQEYVAIN-PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP-RLAFEF 198
             ++  A   E V    PC  +++P++    +R  T+ +         + S+    +   
Sbjct: 179 SQIWGMARNHEIVNGECPCTRIKKPRKDNRRMRFLTEAEASTLLVELEKRSKDTHDSALL 238

Query: 199 LLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLL---AMTPIGKE 253
            L+ GLR  +        L   +    I+  K        + D    +L   +      E
Sbjct: 239 SLFCGLRAGEIHSLTWTDLNFTSGTIYIRDPKNKHSRHAYMTDEVRSMLIERSKQLNATE 298

Query: 254 TFFINNDK--QKMNATQFSIWFKAKATKAGVNKS-----AHGVRKFSATISADAGATAHE 306
             F   +   +   +  F           G+  S      H +R   A+     G   + 
Sbjct: 299 YVFPAQNGAKRNWVSDTFERVVDQLGLNDGITDSRQRVVFHTLRHTFASWLVQDGTPLYT 358

Query: 307 LMATYGWKTVDQAETYTK 324
           +    G  T++  + Y+ 
Sbjct: 359 VAELMGHTTLEMTKRYSH 376


>gi|157159726|ref|YP_001457044.1| phage integrase family site specific recombinase [Escherichia coli
           HS]
 gi|218550049|ref|YP_002383840.1| Integrase from phage origin [Escherichia fergusonii ATCC 35469]
 gi|157065406|gb|ABV04661.1| site-specific recombinase, phage integrase family [Escherichia coli
           HS]
 gi|218357590|emb|CAQ90229.1| Integrase from phage origin [Escherichia fergusonii ATCC 35469]
          Length = 386

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 46/275 (16%), Positives = 94/275 (34%), Gaps = 26/275 (9%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
           K +IS +        L+  +        D +  +    ++     + +R G    ++ P 
Sbjct: 80  KSIISFWMLHFRETILSDITTEKIMEAVDGMENRRHRLNWEMSRDRCLRLGKPVPEYKPK 139

Query: 132 SAI-----QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            A      + L  +R +   AV   ++   P   +  P+ K   IR  T+E+ ++  +  
Sbjct: 140 LASKGTKTRHLAILRAILNMAVEWGWLDRAP--KISTPRVKNGRIRWLTEEESKRLFAEI 197

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGFM 242
           +    P + F     +GLR S+        +  +           K G  I V L +   
Sbjct: 198 APHFFPVVMFAIT--TGLRRSNVTDLEWSQVDLDKKMAWMHPDETKAGNAIGVPLNETAC 255

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFS------------IWFKAKATKAGV-NKSAHGV 289
           ++L       + +   + K    +                  +K    +AG+ N   H +
Sbjct: 256 QILRKQQGLHKRWVFVHTKPAYRSDGTKTAAVRKMRTDSNKAWKGALKRAGISNFRFHDL 315

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           R   A+    +G +   L    GW+T++  + Y  
Sbjct: 316 RHTWASWLVQSGVSLLALKEMGGWETLEMVQRYAH 350


>gi|116629555|ref|YP_814727.1| integrase [Lactobacillus gasseri ATCC 33323]
 gi|238854086|ref|ZP_04644435.1| integrase [Lactobacillus gasseri 202-4]
 gi|116095137|gb|ABJ60289.1| Integrase [Lactobacillus gasseri ATCC 33323]
 gi|238833293|gb|EEQ25581.1| integrase [Lactobacillus gasseri 202-4]
          Length = 322

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 40/274 (14%), Positives = 99/274 (36%), Gaps = 14/274 (5%)

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121
             PRK+  + K  ++++ ++      +  +   ++   +Q++ K      R+ITT+ +R 
Sbjct: 35  REPRKRKISNKEYLAKFLEAKKMEGCSDRTIKYYKVTVEQLLAKV-IRPIRRITTEEMRE 93

Query: 122 GVESRKH----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
            +   +       ++      ++   F W   ++Y+  +P   + + + +       T E
Sbjct: 94  YLVEYQKINNCGKTTIDNIRRNISSFFSWLEEEDYILKSPMRRIHKIRAEKLVKNVITDE 153

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVE 236
           D+++ +   S   +     + L  +G+R  +  R     +  +    +   K      V 
Sbjct: 154 DIEKLRDGCSC-LRDVAMIDLLYSTGIRVGELVRLNRNDINFSERECVVFGKGDKERRVY 212

Query: 237 LPDG----FMKLLAMTPIGKETFFINNDKQ--KMNATQFSIWFKAKATKAGVNK-SAHGV 289
                    +  L          F++ DK   ++  +   I  +    K  +++   H  
Sbjct: 213 FDAKSKVHLINYLRSREDDNPALFVSLDKPNDRLKISGVEIRLRQLGRKLHLDRIHPHKF 272

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           R+  AT + D G    ++    G   +D    Y 
Sbjct: 273 RRSMATRAIDKGMPIEQVQKILGHSQIDTTMQYA 306


>gi|300714681|ref|YP_003739484.1| Site-specific recombinase, phage integrase family [Erwinia
           billingiae Eb661]
 gi|299060517|emb|CAX57624.1| Site-specific recombinase, phage integrase family [Erwinia
           billingiae Eb661]
          Length = 335

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 54/303 (17%), Positives = 100/303 (33%), Gaps = 18/303 (5%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87
             G+RIR  +  +S    A+   +  +  KRE  ++ +     L  LI+ +        +
Sbjct: 20  REGKRIRRKFERKSE-AKAFELHIMATAGKREEWHNTKTDRRKLSELIANWY---DVHGI 75

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHI---RSGVESRKHTPSSAIQFLTSMRVLF 144
            + +      +  +     GD     +T K +   RS    ++ +PS+  + +  +  +F
Sbjct: 76  TMKNGKIERMHLLKTAAHLGDVPASTLTKKLLLNLRSERLKQEVSPSTINRDIYRLSGMF 135

Query: 145 KWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203
              +    Y   NP   +   K+    +     E + Q      EG   R+A    L +G
Sbjct: 136 TTLIMLGEYKQANPVRELPALKQAAPEVIFLMPEQITQLLERL-EGDDLRVAL-LCLSTG 193

Query: 204 LRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK 263
            R S++       ++         K G   TV +     K +     GK     N D   
Sbjct: 194 ARWSEAANLEAIRVRMQRVHFFATKNGKNRTVPISAELEKTIKTKISGK---LFNVD--- 247

Query: 264 MNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
                F    +         ++ H +R   A+     G     L    G   ++Q   Y 
Sbjct: 248 --YENFRQQLREVIPDLPRGQATHVLRHTFASHFMMNGGNIITLRDILGHSKIEQTMIYA 305

Query: 324 KGA 326
             A
Sbjct: 306 HFA 308


>gi|295102658|emb|CBL00203.1| Site-specific recombinase XerD [Faecalibacterium prausnitzii L2-6]
          Length = 485

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 50/352 (14%), Positives = 108/352 (30%), Gaps = 53/352 (15%)

Query: 24  YFRKGHGRRIRLPYPHESTFIPAYMSALTGS----TPKREYINSPRKKPTTLKWLISEYR 79
           Y R+     ++           A   A+  +    +P +E        P      I+ + 
Sbjct: 113 YERQQEEASVQQFLDWHKELADALQYAVANNWMKVSPIKEVDPRLDNSPVLFTDFITNWL 172

Query: 80  KSAHWGSLAVNSRISFES--------YFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
           K      + + +  S+E         YF+ +     D +      +        R  T +
Sbjct: 173 KMMK-SRVEITTYTSYERAIIHKIVPYFEPLHYTLQDMEQHPKYIQDFYQHELDRGLTAN 231

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           + I +  ++R   ++A +   +  NP   VERP+++      ++ E+++Q  +   +G  
Sbjct: 232 TVIHYHANIRKCLQYAFQIGMIRSNPADRVERPRKEKFKSEIYSGEELEQLFTAI-QGDP 290

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQ------------------NNIFSIKTQKTGTI- 232
                    + GLR S+        +                     +  I   KT T  
Sbjct: 291 AEFGVIMAAFYGLRRSEIVGLKWDAIDFENKKISIQHTVVTAKVNGTVTEIARDKTKTKS 350

Query: 233 --ITVELPDGFMKLLAMTPIGKE----------------TFFINNDKQKMNATQFSIWFK 274
              T+ L     ++L      +E                  +++   +++     S  F 
Sbjct: 351 SCRTLPLIPACEQMLNKMKKEQEQNRKVCGKSYCTDYLDYIYVDPMGKRIRPDFLSQHFP 410

Query: 275 AKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTK 324
                  + +   H +R   A++    G +  E+    G   +      YT 
Sbjct: 411 DFLVAHQMKRIRFHDLRHSCASLLYANGVSLKEIQEWLGHSDISTTSNIYTH 462


>gi|288927180|ref|ZP_06421060.1| integrase/recombinase y4rA [Prevotella buccae D17]
 gi|288336049|gb|EFC74450.1| integrase/recombinase y4rA [Prevotella buccae D17]
          Length = 426

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/305 (12%), Positives = 87/305 (28%), Gaps = 27/305 (8%)

Query: 41  STFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD 100
           + F+       TG   +R            +  ++ ++            +  +      
Sbjct: 98  TEFMQ------TGIIRRRIVKLHEFPLDGEIGNVVLQHLDFLREQRRCEPTIHNHRRLLS 151

Query: 101 QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
             I          I     +  VE   H  +   +   ++R    +   +   + N    
Sbjct: 152 YFIAGLSQKGIDSICGITEKVIVEFVDHAQTCKSEHFYAIRQFCSFLYERGMTSTNLSYV 211

Query: 161 VER--PKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGV 214
           + R    +  +    ++ ++++Q +       + G +    F      GLR SD      
Sbjct: 212 LTRSNFPQHEKLPSVYSCDEIKQIEGSIEQSSAVGKRDYAIFLLASRLGLRVSDIASLTW 271

Query: 215 QHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG-------KETFFI-NNDKQKM 264
            ++   N   ++   KT   + + L     + L             KE F   +   + M
Sbjct: 272 DNIDWDNGKITLYQYKTKAPMELPLLREIGEALVTYARDSRPKSHLKEVFLTASAPYRPM 331

Query: 265 NATQFSIWFKAKATKAGVNKS-----AHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
                +         +G++ S      H +R   A+     G +   +    G ++    
Sbjct: 332 TRISLNGVITRIMQSSGIDISSRRFGPHSMRHSLASNMLRQGTSLPVISGILGHESTQTT 391

Query: 320 ETYTK 324
             Y +
Sbjct: 392 MEYLR 396


>gi|224023591|ref|ZP_03641957.1| hypothetical protein BACCOPRO_00295 [Bacteroides coprophilus DSM
           18228]
 gi|224016813|gb|EEF74825.1| hypothetical protein BACCOPRO_00295 [Bacteroides coprophilus DSM
           18228]
          Length = 207

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 67/190 (35%), Gaps = 17/190 (8%)

Query: 152 YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-----EGSQPRLAFEFLLYSGLRC 206
            + ++P L V  PK+K        + +M +            G + R+  E    +G+R 
Sbjct: 1   MIPVDPMLKVIGPKKKKPLPVFVKEAEMDRLLDDADFGDGFLGVRDRMILEVFYETGVRR 60

Query: 207 SDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLA---------MTPIGKETFF 256
           S+        +  +   IK T K      +   +   + L          ++    + FF
Sbjct: 61  SELIGLNDADVDFSSCVIKVTGKRNKQRLIPFGEELERDLRVYLSVRDENISERENDAFF 120

Query: 257 INNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWK 314
           +  D ++++     +  K   TK      KS H +R   AT   +  A    +    G +
Sbjct: 121 VRKDGRRLSPGMVYLLVKRNLTKVVTLKKKSPHVLRHTFATSMLNHQAELEAVKELLGHE 180

Query: 315 TVDQAETYTK 324
           ++   E YT 
Sbjct: 181 SLSTTEVYTH 190


>gi|91204063|emb|CAJ71716.1| conserved hypothetical protein [Candidatus Kuenenia
           stuttgartiensis]
          Length = 433

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 49/312 (15%), Positives = 97/312 (31%), Gaps = 63/312 (20%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISF----ESYFDQIIRKSG-DFDYRKITTKHIRSGVES 125
              +I + R+       + ++  ++    + +   I+   G  F+   + +  +R+ +  
Sbjct: 105 FNAVIDKLRELIRLKHYSYSTEQTYIEWAKKFHTFILDSKGIKFEIDTLDSNDVRNYLSY 164

Query: 126 RKHTPS----SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
                     +  Q  +++  LFK  +  E   +       R KR T+     T ED+Q+
Sbjct: 165 LALKQRVSSSTQNQAFSALLFLFKNVLNVELGDL---GDTVRAKRGTKLPVVLTVEDVQE 221

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELP- 238
                    +  L  + +  SGLR  +  R  V+ +   +N+  +++ K     +  LP 
Sbjct: 222 LFKQVK--GRNLLIIQLIYGSGLRLMELARLRVKDIDFDSNMIFVRSGKGDKDRSTMLPE 279

Query: 239 ---DGFMKLLAMTPIGK---------ETFFINN--------------------------- 259
                    L    +           E +  N                            
Sbjct: 280 FVKPELKLHLDKVKVLHNEDVEKGYGEVYLPNALDRKYPNAPKDWGWQYVFPSERLSVDL 339

Query: 260 -----DKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYG 312
                 +  ++        K    KAG+  N S H +R   AT     G    E+    G
Sbjct: 340 RSGKIRRHHLSDKAIQNMVKGAVKKAGIVKNASVHTLRHSFATHLLMNGVNIREVQDLLG 399

Query: 313 WKTVDQAETYTK 324
            K ++    YT 
Sbjct: 400 HKNLETTMIYTH 411


>gi|56478761|ref|YP_160350.1| phage-related integrase [Aromatoleum aromaticum EbN1]
 gi|56314804|emb|CAI09449.1| phage-related integrase [Aromatoleum aromaticum EbN1]
          Length = 277

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 48/274 (17%), Positives = 88/274 (32%), Gaps = 34/274 (12%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE--SRKHTPSSAIQFLTSMRV 142
           G L+  +  S E     + +  G      +  KHI   +        P  A + +  +  
Sbjct: 4   GKLSPETIDSNELELVALKQAFGKMAPEAVRPKHIWDYLHLYRGAEAPVRANREIALLSR 63

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---------------- 186
           +F   V    + +NPC  VER +      R  +  +   F +F                 
Sbjct: 64  MFSRLVNAGALDLNPCTGVERNEENAR-DRLVSDAEFDAFLTFCRANGHLDEDSPAKRTS 122

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
             G +  LA      +G       +     ++++      +K G    VE        + 
Sbjct: 123 DAGRRLALAAHVAYLTGKALGQVLKISRTQIKDDGIEFGKRKRGARTLVEWTTELQAAVD 182

Query: 247 -----MTPIGKETFFINNDKQKMNATQFSIWFKAKA---TKAGVNK-SAHGVRKFSATIS 297
                 + I       + D Q   AT F   ++       +AG  + + H +R  + T +
Sbjct: 183 ECLALPSKITSTYLIFSGDGQPYTATGFKSMWQRMMNAWEEAGNERFTFHDLRAKTVTDT 242

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            +AG    +     G +T       +K  DR R+
Sbjct: 243 TEAG---RKASDLTGHRTEAVV---SKVYDRRRI 270


>gi|282857147|ref|ZP_06266392.1| site-specific recombinase XerD [Pyramidobacter piscolens W5455]
 gi|282585016|gb|EFB90339.1| site-specific recombinase XerD [Pyramidobacter piscolens W5455]
          Length = 318

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/297 (12%), Positives = 87/297 (29%), Gaps = 19/297 (6%)

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128
           T++      +         A  +   +     Q            +  +       S++ 
Sbjct: 16  TSIDEAAQSFLTCKTAAKAAPKTCKEYAKTIRQFFAAFPQAWSSPLKMRTAFLSWLSQEV 75

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYV--AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            P++    L  +R  ++W V +       +P   ++R +      R      +++  +  
Sbjct: 76  APATYNLQLIYVRAFWRWCVEERIQPPEPDPFRGLKR-RSAPGRFRDIDAAKVKELLALP 134

Query: 187 S----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI----KTQKTGTIITVELP 238
                 G +      F L +  R  ++ +        +  ++       KT     + L 
Sbjct: 135 DRSTWAGLRDYALILFTLDTAARPGEALQLLPADFNFSSLAVVIPAHAAKTREERIIPLS 194

Query: 239 D----GFMKLLAMTPI---GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRK 291
                    ++   P     +   F +   ++    +++   K    K G     + +R 
Sbjct: 195 PTTAAALRHVIQRRPREWDAEMYVFASVTGRRFAVERWNDRLKGYRLKDGTTFKPYDLRH 254

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSRRISSVVDSDD 347
            + T+   AG +   L    G       + Y    AD +R     S  +  +V +  
Sbjct: 255 AACTLHLRAGMSGEVLQRLMGHHGPQMTQRYIHLTADDLRKEQALSSPVGRLVPARK 311


>gi|257452045|ref|ZP_05617344.1| putative integrase [Fusobacterium sp. 3_1_5R]
 gi|317058593|ref|ZP_07923078.1| conserved hypothetical protein [Fusobacterium sp. 3_1_5R]
 gi|313684269|gb|EFS21104.1| conserved hypothetical protein [Fusobacterium sp. 3_1_5R]
          Length = 329

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/262 (14%), Positives = 89/262 (33%), Gaps = 14/262 (5%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129
           L++ +  +      +  S   ++   + ++   G  + + I T  +RS +      ++ +
Sbjct: 54  LLNTFLSAKRVEGCSEKSLSYYQKTIETMLNSIG-KEIKYIVTDDLRSYLTEYQSEKQSS 112

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
             +       +   F W   ++Y+  +P   + + K  +     ++ E++++ +    E 
Sbjct: 113 RVTIDNIRRILSSFFSWLEDEDYILKSPVRRIHKVKTISSIKDTYSDEELERMRDSCHE- 171

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDG----FMKL 244
            +     + L  +G+R  +      Q +Q      I   K      V             
Sbjct: 172 IRDLALIDILASTGMRVGELVLLNRQDIQFGERECIVFGKGDKERVVYFDARTKIHLQNY 231

Query: 245 LAMTPIGKETFFINNDKQ--KMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG 301
           L          F+   K   ++      +  +    +  +NK   H  R+  ATI+ D G
Sbjct: 232 LNTRVDSNPALFVALRKPYNRLTIGGIEVRLRKIGKELEINKVHPHKFRRTLATIAIDKG 291

Query: 302 ATAHELMATYGWKTVDQAETYT 323
               +L    G + +D    Y 
Sbjct: 292 MPIEQLQKLLGHRRIDTTLQYA 313


>gi|261363825|ref|ZP_05976708.1| xylulose-5-phosphate/fructose-6-phosphate phosphoketolase
           [Neisseria mucosa ATCC 25996]
 gi|288568408|gb|EFC89968.1| xylulose-5-phosphate/fructose-6-phosphate phosphoketolase
           [Neisseria mucosa ATCC 25996]
          Length = 289

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 45/241 (18%), Positives = 89/241 (36%), Gaps = 17/241 (7%)

Query: 111 YRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWA-VRQEYVAINPCLSVERPKRKTE 169
              +T   I + +   + + ++  ++L  ++ L   A    EY+   P   + R +   +
Sbjct: 50  LHHMTKTVIMAEIAKLEGSNATKNRYLAFVQALLNKAAKDWEYLDGAP--KLPRYQEAKK 107

Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIK 225
            IR  T ++ ++  +   +     + F   L +GLR S+      Q +        F   
Sbjct: 108 RIRWLTPQEAERLIAALPDYIAAMVVF--SLNTGLRKSNVFGLKWQQIDFKRKVAWFHHD 165

Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NK 284
             K+G  + V L D  + +L         +   N++ K        W K     AG+ N 
Sbjct: 166 ETKSGRALGVALNDAAVAVLLKQRGKHPEYVFTNNRCKPVKDVKKPW-KKALQDAGIENF 224

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
             H +R   A+     G + + L    GW   D  + Y        L  ++  R + +++
Sbjct: 225 RWHDLRHTWASWLVQNGVSLYALKEMGGWSDFDMVQRYAH------LAPEHLHRHAGLLN 278

Query: 345 S 345
           S
Sbjct: 279 S 279


>gi|197302663|ref|ZP_03167717.1| hypothetical protein RUMLAC_01393 [Ruminococcus lactaris ATCC
           29176]
 gi|197298245|gb|EDY32791.1| hypothetical protein RUMLAC_01393 [Ruminococcus lactaris ATCC
           29176]
          Length = 377

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 40/295 (13%), Positives = 94/295 (31%), Gaps = 37/295 (12%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRK----ITTKHIRSGVES 125
                 ++ K      L  ++   +    +  I  + GD+ +      I     +  +  
Sbjct: 69  FSEYCVQWIKINE-SRLKKSTLAKYHFMLENHIKPQLGDYSFTDLNSDIIADFSKDLLYQ 127

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +K +P +    LT +  +  + ++ E  +    +++  P+ + + +R  + E+ Q    +
Sbjct: 128 KKLSPKTVRDILTFVHKIISY-IQAETNSNLSSITISYPRLERKELRVLSAEEQQNLIQY 186

Query: 186 WSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT--------------- 229
             +     + +    L++GLR  + C    + +      +  + T               
Sbjct: 187 LVQDFDIYKFSVLIALFTGLRIGEVCALQWKDISVESGLLTVRHTVQRIKNPDSDSAKKT 246

Query: 230 ----------GTIITVELPDGFMKLLAMTPIGK-ETFFINNDKQKMNATQFSIWFKAKAT 278
                      +  T+ + +G  KL  +      E F +  + Q ++        K    
Sbjct: 247 LLQLGTPKTFSSARTLPVTNGLQKLFKLFQHDDPEAFILTGNHQFIDPRNLQRKLKKYTK 306

Query: 279 KAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK-GADRIR 330
             G+ +   H +R   AT   + G     L    G   +      Y     D  R
Sbjct: 307 DLGIQDVHFHTLRHTFATRCIEFGCDIKILSEMLGHSNISTTLNRYVHPSMDFKR 361


>gi|160933881|ref|ZP_02081268.1| hypothetical protein CLOLEP_02743 [Clostridium leptum DSM 753]
 gi|156866554|gb|EDO59926.1| hypothetical protein CLOLEP_02743 [Clostridium leptum DSM 753]
          Length = 419

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/282 (13%), Positives = 81/282 (28%), Gaps = 59/282 (20%)

Query: 96  ESYFDQIIRKSGDFDYRKITTKHIRSGV------ESRKHTPSSAIQFL---TSMRVLFKW 146
           E     I    GD    +I T ++++ +            P++    +   +  R +F+ 
Sbjct: 115 EQKLRIINCYIGDMPISQIKTANVQNIIFDLSSLNRWTGKPTAKRTLVEYRSVCRQVFQL 174

Query: 147 AVRQEYVAINPCLSVERPKRK-TEGIRPWTKEDMQQFKSFWSEGSQPRL--AFEFLLYSG 203
           A+    +  NP  SV+    +  +  R  + E+       W   +  R   A   ++++G
Sbjct: 175 AIENRIIDYNPASSVKIVSNQLKKERRALSVEE-----QGWIINTPHRAQKAAMIMMFAG 229

Query: 204 LRCSDSCRAGVQHLQNNIFSIKTQK------------------TGTIITVELPDGFMKLL 245
           LR  +        +     +I+  K                  +G  + V +P   +  L
Sbjct: 230 LRRGEVIPLTWNDIDFEAGTIRVNKSVFKEGTRFNIKSGAKTESGNRV-VNIPQILIDFL 288

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--------------------- 284
            + P        +     M  T +   + +      +                       
Sbjct: 289 KLQPKDTILVCPDTKDVMMTETSWRRMWDSYIKDLNIKYGDLNGKRSKYDPKGVPITIPR 348

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
            + H +R    T+   +G          G   +      YT 
Sbjct: 349 ITPHWLRHTFCTLLYLSGTDVLTAKEQMGHSDIKTTLGIYTH 390


>gi|152995812|ref|YP_001340647.1| phage integrase family protein [Marinomonas sp. MWYL1]
 gi|150836736|gb|ABR70712.1| phage integrase family protein [Marinomonas sp. MWYL1]
          Length = 283

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/250 (15%), Positives = 87/250 (34%), Gaps = 20/250 (8%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG----VESRKHTPSSAIQFLTSMR 141
             +V+++ ++     ++ R        ++    I+      +  R  + SS  Q L ++ 
Sbjct: 16  GFSVSTQRAYLYQLTEVARYF-HMPPDRLNQTDIQQYLLYLIRERGWSWSSCRQALHALN 74

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201
            L++    +      P +S+  P +  +       +++Q       +  +  +A      
Sbjct: 75  FLYRKVANKTM----PSVSLPHPNKSQKIPDLLYPDEVQAMI-RCCQHPKVYVAMVLAYT 129

Query: 202 SGLRCSDSCRAGVQHLQN--NIFSIKTQKTGTIITVELPDGFMKLLAM-----TPIGKET 254
           +G+R S+     V  L    +   ++  K      V  P    ++L        P     
Sbjct: 130 TGMRISEVNELRVNDLDLTHHCIKVRQGKGQQDRYVLFPQSLQQVLGRYWQRYEPCDVVV 189

Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYG 312
           + ++   + +++    +  K  A +AG+ K    H +R   A     AG     L A  G
Sbjct: 190 YGLDKH-RPLHSKYLRLETKEAAKRAGIQKCIRFHSLRHAFACHQLLAGMPLPRLQALLG 248

Query: 313 WKTVDQAETY 322
            K +     Y
Sbjct: 249 HKQIQTTFRY 258


>gi|300112795|ref|YP_003759370.1| integron integrase [Nitrosococcus watsonii C-113]
 gi|299538732|gb|ADJ27049.1| integron integrase [Nitrosococcus watsonii C-113]
          Length = 327

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 50/320 (15%), Positives = 101/320 (31%), Gaps = 62/320 (19%)

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
              KP +   L+ + R++      ++ +  ++  +  + I   G      +    I + +
Sbjct: 2   SSSKPKSQPKLLDQVREAIRVRHYSIRTEQAYLGWIKRFIFFHGKRHPGDMGKAEISAFL 61

Query: 124 ESRKHTPSSA----IQFLTSMRVLFKWAVRQ--EYVAINPCLSVERPKRKTEGIRPWTKE 177
                    A     Q L ++  L++  +++   ++       VER K+ +     +T  
Sbjct: 62  THLAIKGKVAASTQNQALNAILFLYREVLKRDVGWLD-----EVERAKKPSRLPVVFTPN 116

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH--LQNNIFSIKTQKTGTIITV 235
           ++++  +   +G    +    L  SGLR  +  R  V+      +  +++  K       
Sbjct: 117 EVRKVLALLPQGKW--VMASLLYGSGLRLMECMRLRVEDADFHYHQITVRDGKGRKDWVT 174

Query: 236 ELPDGFMKLLAMT------------------------------------------PIGKE 253
            LP    K L +                                           P  K 
Sbjct: 175 VLPKKLFKPLQVQLKTVKALHQQDLREGCGAVYLPYALEKKYPNANREFGWPYVFPACKR 234

Query: 254 TFFINN---DKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELM 308
               ++    +  ++ T      K    KAG+NK  S H  R   AT   + G     + 
Sbjct: 235 AIDPSSGVVRRHHLSETALQQAVKNAIRKAGINKPGSCHTFRHSFATHLLENGYDIRTIQ 294

Query: 309 ATYGWKTVDQAETYTKGADR 328
              G K V+    YT   +R
Sbjct: 295 ELLGHKDVNTTMIYTHVLER 314


>gi|302527366|ref|ZP_07279708.1| tyrosine recombinase XerC [Streptomyces sp. AA4]
 gi|302436261|gb|EFL08077.1| tyrosine recombinase XerC [Streptomyces sp. AA4]
          Length = 335

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/296 (14%), Positives = 98/296 (33%), Gaps = 39/296 (13%)

Query: 88  AVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGVESRKHT--PSSAIQFLTS 139
           + ++  ++      I           + D  ++T   +R+   +   +   SS ++  ++
Sbjct: 20  SPHTTAAYRRDLAGITALLLAELGRDEVDVEELTAPVLRAAFGAFADSHAKSSVLRAWST 79

Query: 140 MRVLFKWAVRQEYVAINPCLSVERP----------KRKTEGIRPWTKEDMQQFKSFWSEG 189
                 + V    +A NP  +V RP          + +    +  T       ++     
Sbjct: 80  WNQFLTFCVSDGLLAGNPMGAVARPKTPPLTPKPLRGEETPEQLLTAAADGARRARDPWP 139

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTI-ITVELPDGFMKLL- 245
            +  L     L +GLR ++      + +  ++    +     G+   ++ +     KL+ 
Sbjct: 140 ERDVLVLALGLVAGLRAAEMRALTPRSVVGRDGELRLHVHGKGSRDRSIPVQPALAKLIE 199

Query: 246 -----------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN------KSAHG 288
                             E    +     +         K+    AG++       + H 
Sbjct: 200 DYQASCRRRFPRQRFPASEPLLRDRAGNPIGRGALEYLVKSCYRWAGLHDRVPTGANLHA 259

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
           +R   AT  A+ GATA E+M+  G  ++  ++ Y +   R +     S R    +D
Sbjct: 260 LRHTFATRLAEDGATASEIMSLLGHASLVTSQNYIEATGREQRAAAASNRTYRALD 315


>gi|254713562|ref|ZP_05175373.1| site-specific tyrosine recombinase XerD [Brucella ceti M644/93/1]
 gi|254716083|ref|ZP_05177894.1| site-specific tyrosine recombinase XerD [Brucella ceti M13/05/1]
          Length = 307

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/272 (15%), Positives = 93/272 (34%), Gaps = 32/272 (11%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHT---PSSAIQFLTS 139
              A N+  S+    +    +      +  +  T HIR  +++       P+S  + L++
Sbjct: 18  RGAAQNTLESYRRDLEAAAEELAAKGVNLAEAETGHIRMTLDTMAAQGFAPTSQARRLSA 77

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS------------ 187
           +R  F++   + +   +P   ++ PK++    +  + E++ +     +            
Sbjct: 78  LRQFFRFLYSEGFRQDDPTGFLDAPKKQKPLPKIMSVENVGKLLDRAALEANEAAEPGER 137

Query: 188 -EGSQPRLAFEFLLYSGLRCSDSCRAGVQ-HLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
            +  +     E L  +GLR S+     V     ++ F +   K      V L       L
Sbjct: 138 IKALRLHALLETLYATGLRVSELVGLPVTVARTDHRFLLVRGKGSKDRMVPLSRKARDAL 197

Query: 246 AM-------TPIGKETFFIN---NDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKF 292
                     P   +  ++    ++   +    F+   K  A +AG+     S H +R  
Sbjct: 198 QKFLTLRDSLPGSDDNPWLFPAFSESGHLARQVFARELKGLAARAGLAASSVSPHVLRHA 257

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324
            A+     GA    +    G   +   + YT 
Sbjct: 258 FASHLLQNGADLRTVQQLLGHADISTTQIYTH 289


>gi|83814313|ref|YP_444939.1| phage integrase family site specific recombinase [Salinibacter
           ruber DSM 13855]
 gi|83755707|gb|ABC43820.1| site-specific recombinase, phage integrase family [Salinibacter
           ruber DSM 13855]
          Length = 297

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 41/297 (13%), Positives = 106/297 (35%), Gaps = 32/297 (10%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG----VESR 126
           L+    +Y +       +  +  ++    +   +     +  + T   +R      +E R
Sbjct: 5   LQAFQDDYLE-----DKSDETVGTYRRSLNSFEKWFVQQNTFRFTEDGVREYKRYLMEDR 59

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR-KTEGIRPWTKEDMQQFKSF 185
             +  S   +LT++R   ++      +  NP   V+  +R +T      T+ D+++ ++ 
Sbjct: 60  DLSQVSVSTYLTALRRFCQYLTDVGELTENPATGVKGNRRPETHSRSVLTESDIEKLEAV 119

Query: 186 WSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTII---TVE 236
             + +    +       +LY+GL   +  RA V+ L++ +    ++ Q  G  +      
Sbjct: 120 VDDATQIDKRDHAIISLMLYAGLSEIEIVRADVEDLEHTLMGPVLRVQGKGREVKDQEAP 179

Query: 237 L-PDGFMKLLAMTPIGKET-----FFINND----KQKMNATQFSIWFKAKATKAGVNK-- 284
           L P     + A      +       F+++      +++              +AG+ +  
Sbjct: 180 LDPPVLEAVEAYLDTRDDVHPEDPLFVSHGHRSKGKRLQTRSVRSRINGYLKEAGIKRKG 239

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
            + H +   +A +  + G    E+       T+D    Y K    ++   ++   + 
Sbjct: 240 VTPHSLTHTAALLWLNDGMPLEEVKERMRHGTLDTTMIYYKKQGLLKRDPEDLEELD 296


>gi|256023067|ref|ZP_05436932.1| putative integrase for prophage CP-933O [Escherichia sp. 4_1_40B]
 gi|301028124|ref|ZP_07191398.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 196-1]
 gi|299878793|gb|EFI87004.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 196-1]
          Length = 376

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 60/377 (15%), Positives = 114/377 (30%), Gaps = 64/377 (16%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKR-------- 58
           L P+  K   R+ K+ + +R     +       +        +       ++        
Sbjct: 14  LSPYFDK---RNNKVYWRYRHPITGKNHGLGSIDQKLAETIAAEANSRLARQQMEQMLSL 70

Query: 59  -EYINSPRKKPTTLKWLISEYRKS----AHWGSLAVNSRISFESYFDQIIRKSGDFDYRK 113
            E I S     +T+   ++ YRK        G + +N+     +       + G      
Sbjct: 71  QEKIISDTGGSSTVTIFLNNYRKIQQERYENGEIKLNTLKQKAAPLRVFDERFGTRPLDA 130

Query: 114 ITTKHIRSGVESRKHTPSSAIQ--FLTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTE 169
           IT K + S +E  K    + +   F   +  +F+ A +   V    NP  S ++P+    
Sbjct: 131 ITVKDVVSVLEEYKARGHNRMGQIFRKVLIDVFREAQQTGDVPPGFNPAESAKKPQV-RI 189

Query: 170 GIRPWTKEDMQQ-FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
             +  T ++    + +    G   +      L +G R SD C+     +++    ++ QK
Sbjct: 190 SRQRLTFDEWMMIYNAAEKNGYFLQRGMLLALMTGQRLSDICKMQFSDIRDGYLHVEQQK 249

Query: 229 TGTIITVE-----------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265
           TGT I +                        L    +         K           + 
Sbjct: 250 TGTRIAIPLALRCDKLNLTLDDVVSSCRDCVLSPWLLHHHHAKGTAK-------RGGMVK 302

Query: 266 ATQFSIWFKAKA-------TKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
               ++ FK             G   S H  R  S  +  + G     L    G      
Sbjct: 303 PATLTVAFKKARDSVDYNWRANGTPPSFHEQRSLSERLFREQGVDTKIL---LGHSNQKM 359

Query: 319 AETY--TKGADRIRLGI 333
            + Y   +G +  +L I
Sbjct: 360 TDIYNDVRGKEWKKLVI 376


>gi|126667008|ref|ZP_01737983.1| hypothetical protein MELB17_05659 [Marinobacter sp. ELB17]
 gi|126628414|gb|EAZ99036.1| hypothetical protein MELB17_05659 [Marinobacter sp. ELB17]
          Length = 303

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 40/273 (14%), Positives = 88/273 (32%), Gaps = 24/273 (8%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
            + L   Y         +  +   +     Q+         +  T +  +  +   +H  
Sbjct: 9   FQALHQRYLTELTLRGKSPKTIDLYTRCLRQVCDYFETCPDQLSTDQLQQYFMHLVEHRS 68

Query: 131 SSAIQF-LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            S ++    +++  +++ + + +    P   V+ PK +T      + +++++  S   + 
Sbjct: 69  WSLVKIARNALQSFYQYVLGKPW-EYVPI--VKAPKVQT-LQDVLSLKEVERLISRTRKL 124

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN--IFSIKTQKTGTIITVELPDGFMKLLA- 246
           S   + F      GLR S+S    +  + ++     ++  K      V LP   +K L  
Sbjct: 125 SYQ-VYFLTTYSLGLRLSESLNLTIADVDSHLMRVHVRCGKGKKDRFVPLPLMTLKALRR 183

Query: 247 --MTPIGKETFF---------INNDKQK--MNATQFSIWFKAKATKAGVNKS--AHGVRK 291
              T    +  F         +    +   M         K  A   G+ K    H +R 
Sbjct: 184 YWATHRHPDLLFPGWHPPYASVATSGKPRVMARGGVQKAIKQVALDCGIRKHVHIHSLRH 243

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK 324
             AT   + G     +    G  +      YT+
Sbjct: 244 SFATHLLENGVNLRSIQTLLGHASPVTTARYTR 276


>gi|304320725|ref|YP_003854368.1| Phage integrase [Parvularcula bermudensis HTCC2503]
 gi|303299627|gb|ADM09226.1| Phage integrase [Parvularcula bermudensis HTCC2503]
          Length = 421

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 41/265 (15%), Positives = 91/265 (34%), Gaps = 18/265 (6%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLF 144
             L   +R   E   D I   +G     + T KH   GV        +A + + S + + 
Sbjct: 155 KKLRELTRRDVELLRDDI--TAGRTAVVQKTKKH---GVRRATGGTGTAKRTMVSFKSVL 209

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-GSQPRLA-----FEF 198
            +     +V  N   ++ R     +  R  +  +  +      E     R          
Sbjct: 210 AYMKDIGFVDQNVAANL-RLAPDGKKERYLSVAEAHRLGKCLDEWEQMDRRMTGITIIRL 268

Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-ELPDGFMKLLAMTPIGKETF-F 256
           LL +G R  +        +  +    + ++T +  ++  +    + +L   P    T+ F
Sbjct: 269 LLMTGARTKEIEELKWSEIDFDRSFFRFEETKSGRSIRPISPQVLDILKGLPRLHPTWVF 328

Query: 257 INNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKT 315
           +NN          ++W +    +AG+ +   H +R   A+ +   G +   +    G   
Sbjct: 329 LNNAGTGPYCGTQAVW-RLVREEAGLPDVRKHDLRHSFASFALANGLSLPVIGTLLGHSR 387

Query: 316 VDQAETYTKGADRIRLGIKNSRRIS 340
            +  + Y   +DR    ++ ++ + 
Sbjct: 388 PETTQRYAHLSDRH--AMEAAKSVG 410


>gi|77413793|ref|ZP_00789973.1| site-specific recombinase, phage integrase family [Streptococcus
           agalactiae 515]
 gi|77160155|gb|EAO71286.1| site-specific recombinase, phage integrase family [Streptococcus
           agalactiae 515]
          Length = 384

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 58/350 (16%), Positives = 109/350 (31%), Gaps = 54/350 (15%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEY 78
           GK  YY ++G   R             A+ +A+        +++   +   T + L   +
Sbjct: 26  GKKKYYTKRGFKTRKAAK---------AHETAVNHQLNSGTFVHITAQTTYTYQELYQRW 76

Query: 79  RKSAHWGSLAVNSRISFESYFDQ--IIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF 136
            +   +      +     +   +  I+   G+     I+    ++ +  +  T  +  Q 
Sbjct: 77  YE--AYKDTVEATTAVKTADLYRLHILPVFGEKKISIISPLDCQTFITDKAKTFKNMKQI 134

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-PWTKEDMQQFKSFWSEGS--QPR 193
            +    +F++A+   Y+  NP   V  PK K       WT  ++  F +   E    +  
Sbjct: 135 KSYTSKIFEFAINMNYIERNPMSKVIMPKLKKTVSENYWTVNELHHFLTIILENEPYKHY 194

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT----------------VEL 237
             F  L YSGLR  +      +   +    +   K+   I                 + L
Sbjct: 195 ALFRLLAYSGLRKGELYALKWEDFDSENQLLTVSKSLGRIDGHAIEKGTKNTFSVRSIYL 254

Query: 238 PDG----FMKLLAMTPIGK--------------ETFFINNDKQ--KMNATQFSIWFKAKA 277
            D       K    T   K                 + N D +   ++A   +   K   
Sbjct: 255 DDETCSILNKWKQETSREKWQLSVQPLSLDKEFMFTYCNRDGEIEPLHADYINNILKRII 314

Query: 278 TKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKG 325
            K  + K S HG R   AT+  + G          G  +     +TY+  
Sbjct: 315 RKHNLKKISPHGFRHTHATLMIEMGIDPVNTAKRLGHASSQITLDTYSHA 364


>gi|291546173|emb|CBL19281.1| Site-specific recombinase XerD [Ruminococcus sp. SR1/5]
          Length = 353

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 50/331 (15%), Positives = 110/331 (33%), Gaps = 42/331 (12%)

Query: 41  STFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGS--LAVNSRISFESY 98
             F   Y  A+  +T  +  I+         ++L+ +   +  +    ++  +       
Sbjct: 27  PPFCRDYFRAIDATTTTKTRISYAYDIRIFFQFLLDQ---NPMFKDKNMSDFTID----V 79

Query: 99  FDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158
            DQI     +     +         ++  +      + ++++R  + +  + E +  NP 
Sbjct: 80  LDQIKAVDLEEYEEFLKVYKSADSSKTETNGERGVKRKISALRSFYAYYYKHEMITTNPS 139

Query: 159 LSVERPKRKTEGIRPWTKEDMQQFKSF--------------WSEGSQPR--LAFEFLLYS 202
           + ++ PK   + I     +++     +              + E ++ R       LL +
Sbjct: 140 VLIDVPKIHDKNIIRLDTDEVAMLLDYIENCGDTLTGQKRMYHEKTKDRDLAIVTLLLGT 199

Query: 203 GLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLA--------MTPIGK 252
           G+R S+     V+ +   NN   + T+K G  + V       K L         +TP+  
Sbjct: 200 GIRVSECVGLDVEDVDFKNNGIKV-TRKGGNEMVVYFGPEVEKALKKYLEVRENITPLAG 258

Query: 253 --ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELM 308
                F +  ++++         K  A +    K  + H +R    T         + + 
Sbjct: 259 HEHALFYSTQRRRIGVQAIENLVKKYAREITTTKKITPHKLRSTYGTALYQETGDIYLVA 318

Query: 309 ATYGWKTVDQA-ETYTKGAD-RIRLGIKNSR 337
              G K V+   + Y    D R R   K  R
Sbjct: 319 DVLGHKDVNTTKKHYAALDDARRRQAAKAVR 349


>gi|163857193|ref|YP_001631491.1| hypothetical protein Bpet2881 [Bordetella petrii DSM 12804]
 gi|163260921|emb|CAP43223.1| int3 [Bordetella petrii]
          Length = 402

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 61/338 (18%), Positives = 113/338 (33%), Gaps = 35/338 (10%)

Query: 21  IIYYFRKGHGRRI----RLPYPHESTFIPAYMSALT----GSTPKREYIN--------SP 64
             Y FR G   ++    R P    +     +++A      G +P  +  +        + 
Sbjct: 45  WRYKFRLGGKEQVFAIGRYPDVGLAEARERHLAARRLVADGVSPTAQRRDDRARMAEDAA 104

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRSGV 123
           R K  T K ++  ++ +    +LA  +    +   D+ +  K G     +IT + +   +
Sbjct: 105 RAKAGTFKAVLDSWKATPA-RALAPATIRQRDREIDRYLEPKLGARPVGEITRRELADLL 163

Query: 124 ESRK-HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER-PKRKTEGIRPWTKEDMQQ 181
           ++    TP  A    T M  +F+ AV    +A NP       P RK         +++  
Sbjct: 164 KTVATDTPEVARNLRTHMNSIFEHAVDVGLIAGNPTPGPRALPARKQTSHPAVAMDELGA 223

Query: 182 FKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI----KTQKTGTIIT 234
             +     +     + AF  LL +  R  +        +  +           KT T   
Sbjct: 224 LLASIDASACQPATKAAFRLLLLTACRKLEITSGRWDEIDLDAGEWLIPADRMKTRTAHW 283

Query: 235 VELPDGFMKLLAM--TPIGKETFFINNDK--QKMNATQFSIWFKAKATKAGVNKSAHGVR 290
           V L    ++LL       G +  F + DK    M+ T  +   +    +     + HG R
Sbjct: 284 VPLSRQAVELLRAVRAHSGGDYVFPHRDKPNTPMSPTALNEMLRRVGYR--REMTVHGTR 341

Query: 291 KFSATIS-ADAGATAHELMATYGWKT-VDQAETYTKGA 326
              +T + A  GA    +               Y + A
Sbjct: 342 SIFSTWANAQPGANVDVIERCLAHAPRDKVRAAYNRHA 379


>gi|329570113|gb|EGG51855.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX1467]
          Length = 392

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 59/391 (15%), Positives = 122/391 (31%), Gaps = 70/391 (17%)

Query: 1   MTPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60
           M    R    ++      GKI +YF+     R R         +            K+  
Sbjct: 1   MENMSRFKKHISAT----GKITWYFQAFRTTR-RGFNSKREAQLAYLEMERQHRNQKKRI 55

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
            ++ +    + KW   EY +S +     + +    E     + R  GD     ++++ ++
Sbjct: 56  ASNDKFSVISQKWF--EYYRSLN--EQKIATYDKREEQVKILNRWIGDEKLNSLSSEELQ 111

Query: 121 SGVESRKHT----------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE- 169
             +   K             +S    +  + ++FK+ +++     NP   V+ PK +   
Sbjct: 112 KFLFILKEKGINGVDVGYAKNSLQSLVQVLNMIFKYCMKKNLTNENPMKFVKMPKYQLTV 171

Query: 170 ----------GIRPWTKEDMQQFKSF--WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217
                       +  T ++++ F ++    E     + F  L Y+G R S++     Q +
Sbjct: 172 KDLKESVNCLEDKFLTVDELRTFLNYGIIYEELPMSVLFHVLFYTGCRVSEALALQPQDI 231

Query: 218 QNNI-----------------FSIKTQKT-GTIITVELPD-------GFMKLLAMTPIGK 252
                                F I+T KT  +   V +           + +L  T    
Sbjct: 232 DFERNEILFYKQTAVKGKSKDFRIETTKTVSSARRVPVTPLVMEKLQELIDVLNKTKRNS 291

Query: 253 E-------TFFINNDKQ---KMNATQFSIWFKAKATKAGVNKSAHG--VRKFSATISADA 300
                    F   +  +          +   K    + G+NK+ H    R   A++ A+ 
Sbjct: 292 NFVVDEAYLFVYLDPGKCGVPYRREYVNDHVKRCVDRCGINKNFHTHLARHTMASLVAEY 351

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRL 331
             +   L    G      ++ Y       R+
Sbjct: 352 -CSWDVLKDRLGHTDSTTSKIYRHLTSNERI 381


>gi|291528111|emb|CBK93697.1| Site-specific recombinase XerD [Eubacterium rectale M104/1]
 gi|291540208|emb|CBL13319.1| Site-specific recombinase XerD [Roseburia intestinalis XB6B4]
          Length = 328

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/248 (15%), Positives = 80/248 (32%), Gaps = 14/248 (5%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES-RKHTPSS---AIQFLTSMRVL 143
           +  + I +++   Q++   G      I T+ +R+ +   +K   SS              
Sbjct: 67  SEKTLIYYKNTIQQMLDSIG-KSVCTIVTEDLRTYLAEYQKEKQSSKVTIDNIRRIFSSF 125

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203
           F W   ++Y+  +P   + R K  +     +T E ++  +       +     + L  +G
Sbjct: 126 FSWLEDEDYIIKSPVRRIHRIKAASTIKETYTDEQLESMRDNCD-NPRDLALIDILASTG 184

Query: 204 LRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDG----FMKLLAMTPIGKETFFIN 258
           +R  +        +  +    I   K      V             L       E  F++
Sbjct: 185 MRVGELVLLNRDDISFDERECIVFGKGDKERMVYFDARTKIHLQNYLDSRTDNNEALFVS 244

Query: 259 --NDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKT 315
                 +M      +  +    +  + K   H  R+  AT++ D G    +L    G + 
Sbjct: 245 LKAPYNRMKIGGIELRLREMGKRLNIEKVHPHKFRRTLATVAIDKGMPIEQLQKLLGHQR 304

Query: 316 VDQAETYT 323
           +D    Y 
Sbjct: 305 IDTTLQYA 312


>gi|285019408|ref|YP_003377119.1| shufflon-specific DNA recombinase [Xanthomonas albilineans GPE
           PC73]
 gi|283474626|emb|CBA17125.1| putative shufflon-specific dna recombinase protein [Xanthomonas
           albilineans]
          Length = 364

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 46/240 (19%), Positives = 85/240 (35%), Gaps = 17/240 (7%)

Query: 101 QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEY---VAINP 157
           ++I K  D     +  K  +     +  +P++    L  +  LF  A++ E+   +  NP
Sbjct: 106 ELIAKYRDDRLAGLDRKDAKGKPAPKPRSPNTVRLDLALLGHLFNVAIK-EWGIGLTYNP 164

Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQ 215
             S+ RP       R  T+E+  +        S P L       L +G+R S+       
Sbjct: 165 VQSIRRPAPSPGRDRRLTREEEIRLMVAVDAHSNPMLGWIVRIALETGMRSSEITGLRRS 224

Query: 216 HLQNNI--FSIKTQKTGTIITVELPDGFMKLLAMT------PIGKETFFINNDKQKMNAT 267
            +  +     ++  K     TV L     +L          PI  +  F     +     
Sbjct: 225 QVDLDRRVARLQETKNTMSRTVPLTVEATRLFREALNNPVRPIDTDLIFFGEPGRDNKRR 284

Query: 268 QFS---IWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            +    IW + K      +   H +R  + +   +AG +  E+ A  G K++   + YT 
Sbjct: 285 AYQFNPIWMRIKKDAGLPDFRFHDLRHEAVSRFVEAGLSDQEVAAISGHKSMQMLKRYTH 344


>gi|254713666|ref|ZP_05175477.1| site-specific tyrosine recombinase XerC [Brucella ceti M644/93/1]
 gi|261321407|ref|ZP_05960604.1| tyrosine recombinase xerC [Brucella ceti M644/93/1]
 gi|261323863|ref|ZP_05963060.1| tyrosine recombinase xerC [Brucella neotomae 5K33]
 gi|261294097|gb|EEX97593.1| tyrosine recombinase xerC [Brucella ceti M644/93/1]
 gi|261299843|gb|EEY03340.1| tyrosine recombinase xerC [Brucella neotomae 5K33]
          Length = 308

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 49/291 (16%), Positives = 92/291 (31%), Gaps = 31/291 (10%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFES----YFDQIIRKSGDFD----YRKITTKHIRS 121
           L     E+ KS      L+ N+ I++E     +   +    G+         +    +RS
Sbjct: 8   LAAAREEWLKSLKTMRRLSDNTLIAYERDTRQFLQFLTGHLGEPPSLKEIGNLRIADLRS 67

Query: 122 GVESRKHTPSSAIQF---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
            + +R++  + A      L  +R L +   ++  V      ++  P++     +P T +D
Sbjct: 68  FLANRRNDGAGARTLGRGLAGVRSLLRHLEKRGLVNAAGASAMRAPRQPKSLPKPLTADD 127

Query: 179 MQ-------QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKT 229
            +       Q        ++       L   GLR S++       L +        T K 
Sbjct: 128 ARRVVSADGQMAEEPWIAARNAAVLTLLYGCGLRISEALGLSGDALSDPSARSMTITGKG 187

Query: 230 GTIITVELPDGFMKLLAMTPI-------GKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
                V L     K +A             +  F       ++A       +      G+
Sbjct: 188 SKTRLVPLLPAVHKAVAQYRALCPFDLSAGQPLFRGAKGGPLHAAIIQREMQKLRAGLGL 247

Query: 283 N--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
               + H +R   AT     G     +    G  ++   + YT G D  RL
Sbjct: 248 PDSATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQVYT-GVDTQRL 297


>gi|237717596|ref|ZP_04548077.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4]
 gi|229453100|gb|EEO58891.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4]
          Length = 406

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 45/275 (16%), Positives = 99/275 (36%), Gaps = 26/275 (9%)

Query: 90  NSRISFE---SYFDQIIRK---SGDFDYRKITTKHIRSGVESRKH----TPSSAIQFLTS 139
            +   +E    Y ++ I+K     D     +    I       K       +SAI  L +
Sbjct: 132 KTVQRYETTTRYLEEFIKKEYQLSDIALNNLEANFISKFDAFLKIEKGCAQNSAITRLKN 191

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLAF 196
           ++ + + A+  +++  +P  +  R K +       T ++++   +         Q R  F
Sbjct: 192 LKKIIRIALENDWIKKDP-FAYYRFKLEETDPEFLTMDEIKIILAKEFTIKRVEQVRDVF 250

Query: 197 EFLLYSGLRCSDSCRAGVQH-LQNN----IFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251
            F +++GL  SD      +H +++N          QKT  +  + +      +L      
Sbjct: 251 IFCVFTGLAFSDVKDLSPEHLVKDNKGELWIRKNRQKTKIMCNIPVLPVAASILEKYKNV 310

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATIS-ADAGATAHELM 308
            E          ++  + + + K  A   G+ K+   H  R   AT      G +   + 
Sbjct: 311 AE--CTGKLLPVLSNQRMNSYLKEIADVCGLQKNLCTHSARHSYATSVCLANGVSMENVA 368

Query: 309 ATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343
              G       + Y +  D+  L  K+ +++++ +
Sbjct: 369 KMLGHADTSVTKHYARVLDQNIL--KDMQKVNNCL 401


>gi|220929268|ref|YP_002506177.1| integrase family protein [Clostridium cellulolyticum H10]
 gi|219999596|gb|ACL76197.1| integrase family protein [Clostridium cellulolyticum H10]
          Length = 413

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 45/298 (15%), Positives = 92/298 (30%), Gaps = 62/298 (20%)

Query: 90  NSRISFESYFD-QIIRKSGDFDYRKITTKHIRSG---------VESRKHTPSSAIQFL-- 137
            +   +      ++++  GD     +   H+ +           E  +    S    L  
Sbjct: 90  KTHQGYSGLLKGRVLKVMGDTKIIDLKPLHLINFYENLQELGIREDGREGKLSTNSILHY 149

Query: 138 -TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK-SFWSEGSQPRLA 195
             ++  +F   VR   +  NPC  V  PK   + +    ++ + Q   +  +E       
Sbjct: 150 HRALNAMFGDGVRWGLIKENPCSKVRPPKVVKKEMSCLDEDQIPQLISALCNEPIDISTF 209

Query: 196 FEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQ--------------KTGTIIT-VELP 238
               L +GLR  + C     ++  ++N   ++                KT + I  + +P
Sbjct: 210 ITLDLVTGLRRGELCGLQWDNVNLKDNTIVVEQAVSYTPETGTIIKTPKTKSSIRKITIP 269

Query: 239 DGFMKLLAM---------TPIGK--------------------ETFFINNDKQKMNATQF 269
                LL++           +G                     E  F   D   M+    
Sbjct: 270 KTTSDLLSIYRKWWLEQKIKVGDQWQKSAREEVEKNGQTWEDPEYLFTTWDGYVMHPDTL 329

Query: 270 SIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKG 325
           +  FK    +  + +   H +R  +AT+   AG     + A  G +  +     Y+  
Sbjct: 330 TKTFKKFIKRNNLPDIRLHDLRHTAATMLIHAGLNIRAVAARMGHENPNVTLAIYSHA 387


>gi|325916803|ref|ZP_08179054.1| integron integrase [Xanthomonas vesicatoria ATCC 35937]
 gi|325536954|gb|EGD08699.1| integron integrase [Xanthomonas vesicatoria ATCC 35937]
          Length = 339

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 42/304 (13%), Positives = 92/304 (30%), Gaps = 58/304 (19%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH----T 129
           L+ + R        ++ +  ++ S+  + I  SG     ++    + + +         +
Sbjct: 18  LLDQVRDRLRVRHYSLRTEQAYLSWIRRFILASGRRHPAQMGQAEVEAFLTRLATDGQVS 77

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
             +  Q L ++  L++  +R E        ++ R KR        ++E++ +  +     
Sbjct: 78  AGTQNQALAALLFLYREVLRIELP---WMENLVRAKRPRRIPVVLSREEVARLLAALEGP 134

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTGTIITVELPDGFMKLLAM 247
               L    L  SG+R  +  R  ++ + +      ++  K G    V LP    ++L  
Sbjct: 135 CW--LMASLLYGSGMRLLECLRLRIKDVDDARGEIVVRDGKGGKDRRVPLPRSLKEVLQR 192

Query: 248 T------------PIGKETFFI---------------------------------NNDKQ 262
                          G    F+                                    + 
Sbjct: 193 QRERALLLHAADLAAGTGRVFLPHALARKYPNAGAEPGWQYLFPSARQSRDPRSGRVGRH 252

Query: 263 KMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
            ++        +     AG+    + H +R   AT   +AG     +    G K V   +
Sbjct: 253 HVSEEVLQRAVQMARRHAGIVKPATCHTLRHSFATHLLEAGHDIRTVQELLGHKDVATTQ 312

Query: 321 TYTK 324
            YT 
Sbjct: 313 IYTH 316


>gi|307293842|ref|ZP_07573686.1| integrase family protein [Sphingobium chlorophenolicum L-1]
 gi|306879993|gb|EFN11210.1| integrase family protein [Sphingobium chlorophenolicum L-1]
          Length = 345

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 58/337 (17%), Positives = 105/337 (31%), Gaps = 39/337 (11%)

Query: 15  RTRHGKIIYYFRKG---HGRRIRLPYPHESTFIPAYMSALTGSTPKREYI-----NSPRK 66
           RTR    IYY R       +RI +      T      S L      R         +   
Sbjct: 5   RTRGKNAIYYIRGTVSLGEKRIDVKEFSSGTRDADAASQLMAEYETRLRRQLMFGPAVLV 64

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
              T+      Y   A     +   R        ++  + GD   +K      +      
Sbjct: 65  AQGTIADAFDSYLSKAKRPCASDILR------IGKLNERIGDMPLQKPKQAWEQFRRAYL 118

Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
             H P+   ++ +  +        +E   + P L ++      E +R  TKE+  +  + 
Sbjct: 119 VDHRPAGQDRYRSVFQAAVN--SYRELHDL-PPLRIKAIPFDNERVRFLTKEERDRLIAS 175

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ----HLQNNIFSIKTQKTGTIITVELPDGF 241
           ++   QP      L + G R   + +         ++     +   K   I +V +    
Sbjct: 176 YAPHIQP--VITMLAFHGPRIQTALQMSWGVKGVDMERETIRLTHTKNAVIQSVPMHPRV 233

Query: 242 MKLL-----AMTPIGKETFFINNDKQKMNATQFS---------IWFKAKATKAGV-NKSA 286
            ++L           KE  F+N   Q    ++ S            K    +AG+ + + 
Sbjct: 234 KEVLMAIWERRGRPMKEHVFLNRFGQPYKDSRLSPIPGGNPLKNQHKTACRRAGIEDFTI 293

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           H  R   A+    AG     +M   GWK++   + Y 
Sbjct: 294 HDWRHHWASHCVMAGIDLITIMHMGGWKSLRMVQRYA 330


>gi|255690724|ref|ZP_05414399.1| glutamine amidotransferase, class I [Bacteroides finegoldii DSM
           17565]
 gi|260623761|gb|EEX46632.1| glutamine amidotransferase, class I [Bacteroides finegoldii DSM
           17565]
          Length = 343

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 47/289 (16%), Positives = 97/289 (33%), Gaps = 42/289 (14%)

Query: 85  GSLAVNSRISFESYFD--------QIIRKSGDFDYRKITTKHIRSGVE----SRKHTPSS 132
            +L+ N+++S+   F          I     +     ITT  I   ++     RK + SS
Sbjct: 28  RNLSRNTQMSYRDTFRMLVSYVSTLISIAIDNLKISDITTDVITKFLDYLEIERKVSVSS 87

Query: 133 AIQFLTSMRVLFKWAV-----RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK---- 183
               L +++   K+         ++        +   K +   I    K +++       
Sbjct: 88  RNNRLAAIKAFAKFLAWKSPEHIDWCHH--VTLIPSKKTEKRMITYMDKSEIEALADAPL 145

Query: 184 ---SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITV- 235
               +    S+  +   F+  +G R S+     V+ +    +  +  +     G    + 
Sbjct: 146 KTCKYQGIRSRDHVIILFMYNTGARVSEVIGVKVKDVAMPSKRGMPMVTLHGKGRKERIC 205

Query: 236 ELPDGFMKLLAMTPIGK---ETFFINNDKQKMNATQFSIWFKAKATKAGVNK-------- 284
            L + F  LL      K   +  F+N   Q M+        K  +    +N         
Sbjct: 206 PLWEDFWDLLKQFIDNKLPDDYLFLNRYNQPMSRFCIYEMIKKYSQDVILNHPSLANKRP 265

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           S H +R  +AT   ++GA    +    G  ++D    Y + +   +L +
Sbjct: 266 SPHVIRHTTATHLLNSGADIDMVRNWMGHSSIDTTNIYAEISMERKLEV 314


>gi|33599180|ref|NP_886740.1| site-specific tyrosine recombinase XerC [Bordetella bronchiseptica
           RB50]
 gi|33575226|emb|CAE30689.1| putative integrase/recombinase [Bordetella bronchiseptica RB50]
          Length = 326

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/242 (15%), Positives = 72/242 (29%), Gaps = 34/242 (14%)

Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
           +H  + + ++   P S  + L + R  ++W      +  NP   V  PK      +  + 
Sbjct: 62  RHFVARLHAQGLGPRSLARALAAWRGFYQWWAPAAGLPGNPATGVRAPKAPRGLPKALSV 121

Query: 177 EDMQQFKSFW-------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL------------ 217
           E  Q                 +    FE L  SGLR ++     + +             
Sbjct: 122 EQTQVLLDHAPARLATEPAALRDHAMFELLYSSGLRLAELVSLDLHYERTPEYESRSWLN 181

Query: 218 QNNIFSIKTQKTGTIITVEL----PDGFMKLLAMTP---------IGKETFFINNDKQKM 264
           +++   I   K G   +V +         K L   P               F+    +++
Sbjct: 182 RDDAEVIVVGKGGKRRSVPVGQSALAALDKWLQARPQLAAAGAGAQDAAALFVGTRGRRI 241

Query: 265 NATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
                 +     A  AG+      H +R   A+    +      +    G   +   + Y
Sbjct: 242 APRVVQLQLARLAQAAGLPAHVHPHVLRHSFASHVLQSAQDLRAVQEMLGHANISTTQVY 301

Query: 323 TK 324
           T+
Sbjct: 302 TR 303


>gi|193068261|ref|ZP_03049225.1| integrase [Escherichia coli E110019]
 gi|192958540|gb|EDV88979.1| integrase [Escherichia coli E110019]
          Length = 334

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 55/311 (17%), Positives = 106/311 (34%), Gaps = 14/311 (4%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIP-AYMSALTGSTPKREYINSPRKKPTTLKWLISE 77
           G+ +   R    +  R+    +   +  A    +  +  KREYI   R +  TL  L+  
Sbjct: 9   GRYLLDIRPNGRKGKRVRKVFDKKSVAVATERYIMANAEKREYIQGYRDR-RTLNDLLEL 67

Query: 78  Y-RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF 136
           +          A   R    +  +++       D  K+     RS   +    PSSA ++
Sbjct: 68  WWMYHGQHRRKAEEDRKQLCNIINELGADMQAVDLDKLKIIAWRSQKIAAGLKPSSANRY 127

Query: 137 LTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195
           +  +  +F    R   + A +P   +         +   +++++         G   R+A
Sbjct: 128 MNRLSGMFTVLKRIGLWDAEHPVRGISILYVSPREMAFLSQKEVALLLDTLD-GDYWRVA 186

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF 255
               L +G R S++C+   + + +N  +    K G   TV +     + +     G    
Sbjct: 187 L-LCLSTGARWSEACKLRGEQIVHNRVTFLETKNGRKRTVPISQAVCEAIKTRETGG--L 243

Query: 256 FINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKT 315
           F    ++      F +  K         ++AH +R   A+     G     L    G  T
Sbjct: 244 FEVKYRE------FCLALKRVKPDLPKGQAAHVLRHTFASHFVMNGGNIIALQKILGHAT 297

Query: 316 VDQAETYTKGA 326
           + Q   Y   A
Sbjct: 298 IQQTMAYAHFA 308


>gi|310829805|ref|YP_003962162.1| hypothetical protein ELI_4257 [Eubacterium limosum KIST612]
 gi|308741539|gb|ADO39199.1| hypothetical protein ELI_4257 [Eubacterium limosum KIST612]
          Length = 304

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 52/302 (17%), Positives = 101/302 (33%), Gaps = 56/302 (18%)

Query: 80  KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHTPSSAIQ 135
           + A     ++ +  S+E     I    G     +ITTK  R+      ES      +   
Sbjct: 14  QEADVKGSSLKTYKSYERV--HIRPFLGHLYLAEITTKKQRAFKKQLCESLADK--TVRD 69

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR-- 193
            L+ +R L K A ++ Y      + ++ PK   E    W ++++  F+   +   + R  
Sbjct: 70  ILSYLRTLLKRAKQKGY-----TVCIKTPKTAVE----WREKEVPDFQEHKALSEKLRHS 120

Query: 194 -----LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-------------- 234
                +     + +GLR  +     V+ +      +  +     I               
Sbjct: 121 QKPVDMGILLAMSTGLRLGEVLGLRVKDVDLRASVLHVRANRQRIYDPKTNTYPVREQTP 180

Query: 235 --------VELPDGFMKLLA------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280
                   + L       LA        P  ++    N   +  +A      F+A   + 
Sbjct: 181 KTQKSCRSIPLHPALKNALAHYLKNMGNPDKEKPLIANRQGRAYDARTLQRRFQAVKKEL 240

Query: 281 GV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGA-DRIRLGIKNS 336
           G+    + H +R   AT + + GA+ H L    G  +V     TY     ++ RL ++  
Sbjct: 241 GLRPGVTFHSLRHSFATRALELGASIHTLSELLGHSSVAFTLNTYGHSVTEQKRLEMEKI 300

Query: 337 RR 338
            +
Sbjct: 301 AK 302


>gi|255012361|ref|ZP_05284487.1| integrase [Bacteroides sp. 2_1_7]
          Length = 310

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 48/302 (15%), Positives = 102/302 (33%), Gaps = 41/302 (13%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTK---HIRSGVESRKH 128
            I+  R+   +     +S  S++   +  +R  G     Y +I  +     +  +  R+ 
Sbjct: 13  YIARLREQGRY-----SSAKSYQDALNSFLRFCGQEVIPYTRIDREMLLRYQDYLRDREC 67

Query: 129 TPSSAIQFLTSMRVLFKWAVRQE------YVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           + ++   ++  +R ++  A+         Y+     + V+  ++K         E ++  
Sbjct: 68  SWNTVSTYMRRIRRVYGLAMENGEAPFSRYLFKGIFMGVKSKQKK-----ALPTESLRLL 122

Query: 183 KS--FWSEGSQ--PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
            +      G +   R      L+ G+   D        +++ +     QKTGT + VE+ 
Sbjct: 123 MTAPLDDSGLRKTQRALCLMFLFCGMAFVDFAHLKKSDIRSGVLRYNRQKTGTPMLVEIQ 182

Query: 239 DGFMKLLAM----TPIGKETFFINNDKQKMNATQFS----------IWFKAKATKAGVNK 284
               +LLA     T       F      K     F              K  A   GV +
Sbjct: 183 PVAKELLAALMTDTLRDSPYLFTFLSGTKTGEEAFREYTSALADFNSSLKELANACGVTE 242

Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
             +++ +R   AT   + G     +    G +++   + Y K     R+   N     S+
Sbjct: 243 MVTSYSIRHSFATTLKEQGVPIEMISELLGHQSIKTTQIYLKSFSLDRMSAVNKACFESI 302

Query: 343 VD 344
            +
Sbjct: 303 YN 304


>gi|329115528|ref|ZP_08244263.1| Prophage DLP12 integrase [Acetobacter pomorum DM001]
 gi|326695148|gb|EGE46854.1| Prophage DLP12 integrase [Acetobacter pomorum DM001]
          Length = 261

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 78/225 (34%), Gaps = 14/225 (6%)

Query: 106 SGDFDYRKITT---KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162
            GD     IT    K   +    +    S+A   L ++R   +WAVR+E V+  P    +
Sbjct: 22  FGDKPPEIITPDSCKRYTAFRLDQGVQISTARTELGTLRAAMRWAVREEIVSKAP--RTK 79

Query: 163 RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NN 220
            P R     R  T+ +  +           RL     L++  R S         +     
Sbjct: 80  LPPRPDARQRWLTRSEAAELVDGCVAH-HIRLFVLLALHTAARKSHILTLTWSRVDLQAR 138

Query: 221 IFSIK----TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK 276
           I   +     +       V + D   + L      +ET F+         +     F+A 
Sbjct: 139 IIDFRDPAKPRTKKGRARVPINDTLYEALKEAYELRETEFVVEWA-GDQVSSIKTGFRAA 197

Query: 277 ATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
           A +A ++  + H +R  +AT  A AG +  ++    G   +   E
Sbjct: 198 AKRADLSGITPHTLRHTAATWMAQAGISLWDIAGYLGHSNIKMVE 242


>gi|319784519|ref|YP_004143995.1| integrase family protein [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317170407|gb|ADV13945.1| integrase family protein [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 364

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 31/225 (13%), Positives = 75/225 (33%), Gaps = 15/225 (6%)

Query: 110 DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
            + + T  ++   +  R ++ ++  + + ++  L + A +   +   P     R K +  
Sbjct: 80  AFDQSTLDNLIGTLRQRGNSNATINRKMAALSKLLRKAHKMGDIHSLP--EFRRQKERAG 137

Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY-SGLRCSDSCRAGVQHLQNNIFSIKTQK 228
            IR   +++  +  +     S+        L  +G R  ++       +Q +  S    K
Sbjct: 138 RIRFLERDEEARLFAAIKSRSEDAYRLSVFLVDTGCRLGEALGLIWNDIQEHRVSFWITK 197

Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA---TQFSIWFKAKATKAGVNKS 285
           +G   T+ + +   +++ + P           K         QF   +     + G+   
Sbjct: 198 SGRSRTIPMTERVKEVIKLPPTEG-----RRPKGPFTKLSQAQFRAIWNDAKAEVGLGAD 252

Query: 286 ----AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
                H +R   A+     G     +    G +T+     Y   A
Sbjct: 253 DQVVPHILRHTCASRLVQGGIDIRRVQMWLGHQTLSMTMRYAHLA 297


>gi|255008467|ref|ZP_05280593.1| putative bacteriophage integrase [Bacteroides fragilis 3_1_12]
 gi|313146195|ref|ZP_07808388.1| site-specific recombinase [Bacteroides fragilis 3_1_12]
 gi|313134962|gb|EFR52322.1| site-specific recombinase [Bacteroides fragilis 3_1_12]
          Length = 380

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 47/258 (18%), Positives = 92/258 (35%), Gaps = 20/258 (7%)

Query: 83  HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRV 142
            +  L +  R   + Y    I        +  T KH +S      +T    + +      
Sbjct: 122 RYDKLGIKLRQIDKKYILGFIEY-----LKTATQKHCKSIKHINANTQ---VYYYKVFHY 173

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIR---PWTKEDMQQFKSFWSEGSQPRLAFEFL 199
               A+  E +  NP   +++ ++           T ++++            + AF F 
Sbjct: 174 CLNSAIIDEIIISNPMDKIKKEEKPKRKRTERAFLTIDEVKTLSQTDFHNKTLKRAFLFS 233

Query: 200 LYSGLRCSDSCRAGVQHLQNNIF-----SIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254
            + GLR SD       +L+ N        +  QKT  ++++ L +  +K L +    ++T
Sbjct: 234 CFCGLRHSDIVALTWGNLKKNKIGKIELHMTQQKTQELLSLPLSNEALKQLPVRGKAQDT 293

Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYG 312
                 K  ++  + +      A KAG+ K  + H  R   AT+    GA  + +    G
Sbjct: 294 --EKVFKGLISLGRTNEILPRWAAKAGIQKHITFHSARHTHATMMITLGADLYTVSKLLG 351

Query: 313 WKTVDQAETYTKGADRIR 330
              +   + Y K  D  +
Sbjct: 352 HTNIQTTQIYAKIVDESK 369


>gi|257064609|ref|YP_003144281.1| site-specific recombinase XerD [Slackia heliotrinireducens DSM
           20476]
 gi|256792262|gb|ACV22932.1| site-specific recombinase XerD [Slackia heliotrinireducens DSM
           20476]
          Length = 356

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 52/335 (15%), Positives = 104/335 (31%), Gaps = 45/335 (13%)

Query: 22  IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKS 81
           ++Y    + RR  +    +S        A                        ++ Y + 
Sbjct: 15  VWYRDSRNRRRHTIKRGFKSEEEANEWEASFSKADSENMSMK-------FSQFMNLYTED 67

Query: 82  AHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESR------KHTPSSAI 134
                L  ++  + +   D+ I+   G+    +ITT  +             K T  +  
Sbjct: 68  MR-PRLRESTWHTKQHMIDKKIMPFFGEMSMDEITTIDVIRWQNEMMSEKGPKGTGYAET 126

Query: 135 QFLTS---MRVLFKWAVRQEYVAINPCLSV-ERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
                   +  +F  AVR   +  +PC  V +   ++ + ++ WTKE+  +F     +  
Sbjct: 127 YLRAVNNQLNAIFNHAVRYYGLPKSPCARVDKMGSKQGDEMKFWTKEEYLKFAEAIMDKP 186

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT----------------GTIIT 234
               AFE L + GLR  +        +     +I   KT                 +I  
Sbjct: 187 DSFTAFEILYWCGLRVGEMLALTPSDINLERSTISVTKTFQRIHGRDTVTEPKTKKSIRL 246

Query: 235 VELPDGF----MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGV 289
           V +P        + +A   +G               T+          ++GV +   H +
Sbjct: 247 VTMPKFLSEEIAEYIASLDVGDHDRLF-----PFTKTRMHHEMDRGCKESGVKRIRIHDL 301

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           R    ++  D G +A  +    G ++ +    Y  
Sbjct: 302 RHSHVSLLIDMGFSAVAIADRVGHESANITYRYAH 336


>gi|145298598|ref|YP_001141439.1| phage integrase [Aeromonas salmonicida subsp. salmonicida A449]
 gi|142851370|gb|ABO89691.1| phage integrase [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 351

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/279 (13%), Positives = 80/279 (28%), Gaps = 39/279 (13%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---- 126
           L  L+  +         ++    + +S    +    GD      + +   +  E+R    
Sbjct: 70  LSDLVELWFG---RHGQSLRDGEARKSKLLTVCNSLGDPLAVNFSARDFAAYREARLSGD 126

Query: 127 ------------KHTPSSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRP 173
                         TP++  +    +R +F    R   +   NP   +   K     +  
Sbjct: 127 ISDRRAINQKKQGVTPNTVNREHAYLRAVFNELKRLGEWQGENPLDGLRAYKVAESELAF 186

Query: 174 WTKEDMQQFKSFW--SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
              ++++   +    S  +   +  +  L +G R S+        +  N  +    K+  
Sbjct: 187 LYLDELKSLLAACVESPNTDLLMVVKLCLATGARWSEVEELTQSQVSPNRVTFTRTKSKK 246

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA----H 287
             +V +           P  +   F +  +           F+    +AG+        H
Sbjct: 247 SRSVPISPEL---YVQLPRKRGRLFSDCYR----------AFEMVVERAGLELPPGQNTH 293

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            +R   A+     G     L    G  T+     Y   A
Sbjct: 294 VLRHTFASHFMMNGGNILVLQKILGHSTIAMTMRYAHFA 332


>gi|153815592|ref|ZP_01968260.1| hypothetical protein RUMTOR_01828 [Ruminococcus torques ATCC 27756]
 gi|145847023|gb|EDK23941.1| hypothetical protein RUMTOR_01828 [Ruminococcus torques ATCC 27756]
          Length = 397

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 62/377 (16%), Positives = 110/377 (29%), Gaps = 59/377 (15%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
            ++ K     G   Y +          P P      P+            E       K 
Sbjct: 24  KYLYKYVDAFGNTKYVYAWRLTP--TDPTPKGKREKPSLRELEQQIRRDIEDGIDSTGKK 81

Query: 69  TTLKWLISEY-RKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRSGVESR 126
            T   L   Y +++A   ++  +++   E     +   K G      I     +      
Sbjct: 82  MT---LCQLYAKQNAQRANVKKSTQKQREQLMRLLKEDKLGARSIDTIKPSDAKEWALRM 138

Query: 127 KHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPC--LSVERPKRKTEGIRPWTKEDMQQ 181
           K      ++      S++  F  A++ + V  NP      E  +  T+     T+E  Q 
Sbjct: 139 KDKGFSYNTINNHKRSLKASFYIAIQDDCVRKNPFDFKLSEVLENDTKEKVALTEEQEQA 198

Query: 182 FKSFWSEGSQPRLAFE---FLLYSGLRCSDSCRAGVQHLQ----------------NNIF 222
             SF    +     ++    LL +GLR S+ C   V  +                    +
Sbjct: 199 LLSFIKTDNVYHKYYDDVLILLKTGLRISELCGLTVADIDFKNEVVIIDHQLLKSKEQGY 258

Query: 223 SIKTQKTGTIIT-VELPDG----FMKLLAMTPIG--------KETFFINNDKQKMNATQF 269
            I+T KT + I  V L       F +++   P              F+N   +   A  +
Sbjct: 259 YIETPKTKSGIRQVPLSRETIQAFQRVMKKRPKAEPFVIDGRGNFLFVNQKGKPKVAIDY 318

Query: 270 SIWFKAKATKAGVNK--------SAHGVRKFSATISADAGATAHELMATYGWKTVD---- 317
           ++ F     K   +         + H +R    T  A       +L    G   +     
Sbjct: 319 NMLFVRMVKKYNKHHKDNPLPHITPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISITMN 378

Query: 318 ---QAETYTKGADRIRL 331
               A   T  ++  RL
Sbjct: 379 WYAHASIDTAKSEVQRL 395


>gi|237737268|ref|ZP_04567749.1| integrase/recombinase [Fusobacterium mortiferum ATCC 9817]
 gi|229421130|gb|EEO36177.1| integrase/recombinase [Fusobacterium mortiferum ATCC 9817]
          Length = 325

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 54/325 (16%), Positives = 104/325 (32%), Gaps = 51/325 (15%)

Query: 48  MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI----- 102
           M  +     + +     +++    K +   YR        +  +   +  Y         
Sbjct: 1   MDIIKREETRLDTPRRKKREKENRKSIFETYR--------SQKTIKDYLFYLKDFLQYIY 52

Query: 103 ----IRKSGDFDY-RKITTKHIRSG----VESRKHTPSSAIQFLTSMRVLFKWAVRQEYV 153
               IR     D  + I  + +       +E RK   +S  + +++++ L+K   +  Y 
Sbjct: 53  EGENIRADELIDLMKDIEKQDVEDYLSHLIEDRKMKKTSVNKVISALKSLYKEMEKNGY- 111

Query: 154 AINPCLSVERPKRKTEGIRPW--TKEDMQQFKSFWSE-GSQPRLAFEFLL---YSGLRCS 207
             NP   VE  K           + ED+++    ++  G +       L    Y+G+R S
Sbjct: 112 -PNPFKYVELFKVSRNIDNVLKLSAEDIKKIIGQYTIKGEKEYRNITILYTLFYTGMRSS 170

Query: 208 DSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINND--- 260
           +      +HL     N    ++  K+G      +    ++ L      K+ FF  +D   
Sbjct: 171 ELINLKFKHLLNREGNYFIKLEETKSGKEQYKSIYPTLVEKLLEYKKYKQMFFSISDENI 230

Query: 261 ------------KQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELM 308
                         K++        +      G + S H +R   AT  +  GA   E+ 
Sbjct: 231 EEQYIFNSSIEKNTKLSYRTLYDIIQNFGKIIGKDISPHNIRHAVATELSLNGADILEIR 290

Query: 309 ATYGWKTVDQAETY--TKGADRIRL 331
              G       E Y   K     R+
Sbjct: 291 DFLGHSDTRVTEIYINAKSVLEKRV 315


>gi|261345904|ref|ZP_05973548.1| site-specific recombinase, phage integrase family [Providencia
           rustigianii DSM 4541]
 gi|282565988|gb|EFB71523.1| site-specific recombinase, phage integrase family [Providencia
           rustigianii DSM 4541]
          Length = 329

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 46/247 (18%), Positives = 81/247 (32%), Gaps = 14/247 (5%)

Query: 84  WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK---HIRSGVESRKHTPSSAIQFLTSM 140
           +         + +    +II   G+    +IT K     RS         S+  + L  +
Sbjct: 71  YKGRNNKYSTNRKRTVTKIINDMGNPSVYQITPKLLGQYRSDRLQSGVKASTVNRELNLL 130

Query: 141 RVLFKWAVRQEYV-AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199
             +F            NP   + + K +   +   TK D+++  +   EG   R+     
Sbjct: 131 MGIFTSLAEIGECSKTNPIKGLSKLKEEKPEMSYLTKSDIEKLLNAV-EGDYWRITV-LC 188

Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN 259
           L +G R  ++ +   ++L +   +    K G   TV + D  MK + +   G      N 
Sbjct: 189 LSTGARWGEATQLRAENLLHGRVTFMKTKNGRHRTVPISDEVMKAVKIKESG---LLFNA 245

Query: 260 DKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
           D        +    K         ++ H +R   A      G     L    G  T+ Q 
Sbjct: 246 D-----YETYRAILKNVKPDLPHGQAVHALRHTFAAHFMMNGGNILTLQKIMGHATIQQT 300

Query: 320 ETYTKGA 326
            TY   A
Sbjct: 301 MTYAHFA 307


>gi|209552450|ref|YP_002284365.1| putative integrase [Pseudomonas phage PAJU2]
 gi|209528723|dbj|BAG75015.1| putative integrase [Pseudomonas phage PAJU2]
          Length = 281

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 45/275 (16%), Positives = 94/275 (34%), Gaps = 14/275 (5%)

Query: 57  KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISF-ESYFDQIIRKSGDFDYRKIT 115
           +  ++++     TTL   + +Y +         +        +    +   G  +     
Sbjct: 3   RSRFVDTRAAMRTTLGKALEQYEREISEHKKGASQERGRIRRWLAHPLAAKGLGEITPSD 62

Query: 116 TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA--INPCLSVERPK-RKTEGIR 172
               R        + S+    L  +  L+  A ++  +    NPC ++  PK  +    R
Sbjct: 63  LAEYRDSRLKDGASSSTVRLDLAIISHLYTIAAKEWRLEGLTNPCKNLRMPKGSRARERR 122

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
           P T E  + +        +  +  E    + +R S+      + +++ +  ++  K G  
Sbjct: 123 PTTLELRKIYAEAAKLHPELPVIIELAADTAMRRSELLLLRREQIRDKVAVLEDTKNGER 182

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMN--ATQFSIWFKAKATKAGV-NKSAHGV 289
             V L     +LL   P          D +  +      S +F      AGV   + H +
Sbjct: 183 RMVPLSSRARELLKSLPA-------RIDGKVFSLAPNTVSNYFPKACESAGVSGLTFHDL 235

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           R  + +   + G +  E+ A  G KT+   + YT 
Sbjct: 236 RHEATSRLFERGFSMMEVAAITGHKTLAMLKRYTH 270


>gi|83944457|ref|ZP_00956910.1| site-specific integrase/recombinase [Sulfitobacter sp. EE-36]
 gi|83844659|gb|EAP82543.1| site-specific integrase/recombinase [Sulfitobacter sp. EE-36]
          Length = 353

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 49/330 (14%), Positives = 94/330 (28%), Gaps = 30/330 (9%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           RT+  ++  Y     G R R        F  A   A+          N+ R    TL   
Sbjct: 4   RTKKTRVYQYDIVVGGHRFRGSC-GTEDFEAA--KAVEADIRANAKRNAARGSDYTLSEA 60

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
           +  Y      G  +  +  S       +    G     K+T   I     + KH  + A 
Sbjct: 61  LGTYINDKIVGRPSEGTTKSQARVI--LSHMDGKKRLSKLTDADITQY--AAKHRATCAN 116

Query: 135 QFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRP----WTKEDMQQFKSFWSEG 189
             +     +   A+R    V       ++    +T+  R      T ++  +  +   + 
Sbjct: 117 STVNRHLQMLGRALRHMGKVYKTEIPDIDLKAAETKEPRERVRELTTDEQTRLFAALPQE 176

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTGTIITVELPDGFMKLLAM 247
             P +AF  +  +G R S       + +       + +  K   ++   +      LL+ 
Sbjct: 177 FHPMVAFALM--TGARISTITGLLWRDVDMPHREITFRL-KGDELMIFPINGELAALLSA 233

Query: 248 TPIG-----KETFFINNDKQKM-------NATQFSIWFKAKATKAGVNK-SAHGVRKFSA 294
            P       +   F   D           +   F   ++     A ++    H +R   A
Sbjct: 234 LPKSNVMESRRYVFTRVDGHSAERIQIIASGGVFGTVWRKALLDAAIDNFRFHDLRHTFA 293

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324
           T           +    G   ++    Y  
Sbjct: 294 TRMLRKTQNISLVSKLLGHTNIETTSRYAH 323


>gi|310695289|gb|ADP05693.1| putative integrase [uncultured microorganism]
          Length = 319

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 47/305 (15%), Positives = 89/305 (29%), Gaps = 60/305 (19%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           L+ E R       LA+ +  ++  +  + I  +G    R++    +   +         A
Sbjct: 20  LLDEVRGRMRRLGLAIRTEKTYVDWIRRFIVANGKRHPREMGAVEVEWFLTELAVKGKVA 79

Query: 134 ----IQFLTSMRVLFKWAVRQEYVAINP-CLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
                Q L+++  L++  + QE     P   ++ R KR        T +++ +     S 
Sbjct: 80  ASTQNQALSALLFLYRKVLGQEL----PWMENIRRAKRPDRLPIVLTFDEVSRILGRMSG 135

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLA 246
            +   L    L  SGLR  +  R  VQ +        ++  K G      LP        
Sbjct: 136 TTH--LMASLLYGSGLRLMECVRLRVQDVDLLRREILVRHGKGGKDRRTVLPIMVAAAFQ 193

Query: 247 M------------TPIGKETFFI---------------------------------NNDK 261
                           G    ++                                    +
Sbjct: 194 AHLIQIRILHERDLQAGHGDVWLPSALERKYPNAAREWIWQYAFPSRSRSIDPRSGVERR 253

Query: 262 QKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQA 319
             ++        +     AG++K A  H +R   AT   ++G+    +    G   V   
Sbjct: 254 HHVDEKTLQRAVRIAVQAAGIDKPATCHTLRHSFATHLLESGSDIRTIQGLLGHSDVSTT 313

Query: 320 ETYTK 324
             YT 
Sbjct: 314 MIYTH 318


>gi|258651475|ref|YP_003200631.1| integrase [Nakamurella multipartita DSM 44233]
 gi|258652720|ref|YP_003201876.1| integrase [Nakamurella multipartita DSM 44233]
 gi|258653844|ref|YP_003203000.1| integrase [Nakamurella multipartita DSM 44233]
 gi|258554700|gb|ACV77642.1| integrase family protein [Nakamurella multipartita DSM 44233]
 gi|258555945|gb|ACV78887.1| integrase family protein [Nakamurella multipartita DSM 44233]
 gi|258557069|gb|ACV80011.1| integrase family protein [Nakamurella multipartita DSM 44233]
          Length = 334

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 70/221 (31%), Gaps = 26/221 (11%)

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPC-------------LSVERPKRKTEGIRPWTKE 177
           ++  + L ++  LF++   +  VA NP                    +      R  +  
Sbjct: 92  TTIKRRLATVSGLFEYLAIRGLVARNPVPRSLSARPGRAPVRGAPLIRAPRRLPRILSPA 151

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVE 236
           ++    S     ++ R     +L  GLR  +      + +Q        T K G    V 
Sbjct: 152 EVNALISALRT-ARDRAMVWLMLLGGLRRCEVLGLRHRDVQPGERRVFVTGKGGHERVVP 210

Query: 237 LPDGFMKLLA------MTPIGKETFFI----NNDKQKMNATQFSIWFKAKATKAGV-NKS 285
           +   F   LA            +  F+        Q ++A            +AG+ + +
Sbjct: 211 VGKVFFAELAGYYATERPDTDTDQVFVVLKGQRRGQPLSAAGVDEVLSGARRRAGLAHAT 270

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            H +R    T   ++G     + A  G  +++  + Y   A
Sbjct: 271 CHELRHTCFTRLRESGMALEAIQAQAGHVSIETTKIYLHLA 311


>gi|295110020|emb|CBL23973.1| Site-specific recombinase XerD [Ruminococcus obeum A2-162]
          Length = 397

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 59/378 (15%), Positives = 108/378 (28%), Gaps = 61/378 (16%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
            ++ K     G   Y +          P P      P+            E       K 
Sbjct: 24  KYLYKYVDAFGNTKYVYAWRLTP--TDPTPKGKREKPSLRELEQQIRRDIEDGIDSTGKK 81

Query: 69  TTLKWLISEY-RKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRSGVESR 126
            T   L   Y +++A   ++  +++   E     +   K G      I     +      
Sbjct: 82  MT---LCQLYAKQNAQRANVKKSTQKQREQLMRLLKEDKLGARSIDTIKPSDAKEWALRM 138

Query: 127 KHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPC--LSVERPKRKTEGIRPWTKEDMQQ 181
           K      ++      S++  F  A++ + V  NP      E  +  T+     T+E  Q 
Sbjct: 139 KDKGFSYNTINNHKRSLKASFYIAIQDDCVRKNPFDFKLSEVLENDTKEKVALTEEQEQA 198

Query: 182 FKSFWSEGSQPRLAFE---FLLYSGLRCSDSCRAGVQHLQ------------------NN 220
             SF    +     ++    LL +GLR S+ C   +  +                     
Sbjct: 199 LLSFIKTDNVYHKYYDDVLILLKTGLRISELCGLTIMDVDFIHEVVVIDHQLLKSKEQGY 258

Query: 221 IFSIKTQKTGTIITVELPDG----FMKLLAMTPIG--------KETFFINNDKQKMNATQ 268
                  K+GT   V L       F +++   P              F+N+  +   A  
Sbjct: 259 YIETPKTKSGTR-QVPLSKETIQAFQRVMKKRPKAEPFVIDGRGNFLFVNHKGKPKVAID 317

Query: 269 FSIWFKAKATKAGVNK--------SAHGVRKFSATISADAGATAHELMATYGWKTVD--- 317
           +++ F     K   +         + H +R    T  A+      +L    G   +    
Sbjct: 318 YTMLFVRMVKKYNKHHKDNPLPHITPHTLRHTFCTRLANKNMNPKDLQYIMGHSNISITM 377

Query: 318 ----QAETYTKGADRIRL 331
                A   T  ++  RL
Sbjct: 378 NWYAHASIDTAKSEVQRL 395


>gi|294775012|ref|ZP_06740541.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
 gi|294451056|gb|EFG19527.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
          Length = 372

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/270 (15%), Positives = 87/270 (32%), Gaps = 22/270 (8%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQII--RKSGDFDYRKITTKHIRSGVESRKH--T 129
           LI +Y  + H        +    +    +    +        +T     + +E  +    
Sbjct: 97  LIGQYLDTYH-----KKDKKMVRACITHLRLFTRKKSLPVTLLTKDFCINFLEYLRDHLR 151

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            ++ I +    R+     + ++ +  NP   +   +         + +++Q+        
Sbjct: 152 GNTPIGYFKKFRMCINKCIEKKLMTSNPTDGIRLMQFDEVTKAILSLKEIQKLAITPCPN 211

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQK-----TGTIITVELPDGFM 242
           ++ + AF F  Y GLR  D  +   + +   +N  +I  QK        I+ + L    +
Sbjct: 212 NEVKRAFLFSCYCGLRWCDVHQLQYKDIDFSSNRLTILQQKVQSHSKNAILHLNLNHTAI 271

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
           KLL       E                + W K    +A ++K  + H  R    T     
Sbjct: 272 KLLQRHKGINEELVFGLPSYSYTLRILNKWVK----RANIHKHITFHCARHSFITNIMAN 327

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIR 330
           GA      +  G  T    E Y    D ++
Sbjct: 328 GANIKTAASLAGHSTTRHTEKYVHIIDELK 357


>gi|260593265|ref|ZP_05858723.1| integrase [Prevotella veroralis F0319]
 gi|260534822|gb|EEX17439.1| integrase [Prevotella veroralis F0319]
          Length = 409

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 64/198 (32%), Gaps = 17/198 (8%)

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-----SEGSQPRL 194
           ++ + + A R+    I     V+  K   +  +   +   ++ K+        E    R 
Sbjct: 192 LKTVCRLAYREGLADILLFDKVKISKGNKKLPKALDRGAFEKLKTLHFEDLEEEMETARD 251

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVELPDGFMKLLAMTP 249
            F F  Y+G    D       HL  +            KTG    V+L    ++L+    
Sbjct: 252 IFLFACYTGAAYCDLMELDKSHLVRDDEGSLWLKFNRHKTGVPCRVKLLPEAIRLMEKLH 311

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS-ADAGATAHE 306
             +    +      M    +  + KA   +AG+    + H  R   AT+   + G     
Sbjct: 312 SDERETLL----PFMGYATYQSYLKALRLRAGISFPFTTHTARHTFATLITLEQGVPIET 367

Query: 307 LMATYGWKTVDQAETYTK 324
           +    G   V   E Y K
Sbjct: 368 VSKMLGHSNVSMTERYAK 385


>gi|254880918|ref|ZP_05253628.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|319639927|ref|ZP_07994655.1| integrase [Bacteroides sp. 3_1_40A]
 gi|254833711|gb|EET14020.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|317388466|gb|EFV69317.1| integrase [Bacteroides sp. 3_1_40A]
          Length = 372

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/270 (15%), Positives = 87/270 (32%), Gaps = 22/270 (8%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQII--RKSGDFDYRKITTKHIRSGVESRKH--T 129
           LI +Y  + H        +    +    +    +        +T     + +E  +    
Sbjct: 97  LIGQYLDTYH-----KKDKKMVRACITHLRLFTRKKSLPVTLLTKDFCINFLEYLRDHLR 151

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            ++ I +    R+     + ++ +  NP   +   +         + +++Q+        
Sbjct: 152 GNTPIGYFKKFRMCINKCIEKKLMTSNPTDGIRLMQFDEVTKAILSLKEIQKLAITPCPN 211

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQK-----TGTIITVELPDGFM 242
           ++ + AF F  Y GLR  D  +   + +   +N  +I  QK        I+ + L    +
Sbjct: 212 NEVKRAFLFSCYCGLRWCDVHQLQYKDIDFSSNRLTILQQKVQSHSKNAILHLNLNHTAI 271

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
           KLL       E                + W K    +A ++K  + H  R    T     
Sbjct: 272 KLLQRHKGINEELVFGLPSYSYTLRILNKWVK----RANIHKHITFHCARHSFITNIMAN 327

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIR 330
           GA      +  G  T    E Y    D ++
Sbjct: 328 GANIKTAASLAGHSTTRHTEKYVHIIDELK 357


>gi|189468256|ref|ZP_03017041.1| hypothetical protein BACINT_04652 [Bacteroides intestinalis DSM
           17393]
 gi|189436520|gb|EDV05505.1| hypothetical protein BACINT_04652 [Bacteroides intestinalis DSM
           17393]
          Length = 398

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 49/272 (18%), Positives = 99/272 (36%), Gaps = 30/272 (11%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVESRKHTPSSAI 134
           +++      L  +++ +  S    +     +  +  +T          ++S+ +  ++  
Sbjct: 115 FKQEVMTSGLKESTKRNHLSTLALLQDFKKNVTFSDLTFEFVSSFEYFLQSKGYHTNTIA 174

Query: 135 QFLTSMRVLFKWAVRQEYVAINP-CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG---- 189
           + +  ++     A+ +EY+ I        + K    G    + E++++ ++   +G    
Sbjct: 175 KHMKHLKRHINVAINKEYMDIQKYAFRKYKIKTVENGHTHLSPEELEKLETLQLKGRYTK 234

Query: 190 -SQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDGFMKL 244
             +   AF F  Y+G+R SD       ++    Q      K+ KTGT + + L       
Sbjct: 235 YQKTLDAFLFCCYAGMRYSDFVNMKPDNIVEMHQETWLIYKSIKTGTEVRLPL------- 287

Query: 245 LAMTPIGKETFFINNDK----QKMNATQFSIWFKA---KATKAGVNK--SAHGVRKFSAT 295
             +   GK    +N  +       +    S   K     A  AGV K  S H  R  +AT
Sbjct: 288 -YLLFSGKGILILNKYQANLQDFFHLRDNSNVNKELIIIARLAGVAKKVSFHTARHTNAT 346

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           +    G     +    G K+V   + YT   D
Sbjct: 347 LLIYNGVNITTVQKLLGHKSVKTTQIYTNVMD 378


>gi|167762501|ref|ZP_02434628.1| hypothetical protein BACSTE_00856 [Bacteroides stercoris ATCC
           43183]
 gi|167699607|gb|EDS16186.1| hypothetical protein BACSTE_00856 [Bacteroides stercoris ATCC
           43183]
          Length = 408

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 48/293 (16%), Positives = 95/293 (32%), Gaps = 35/293 (11%)

Query: 48  MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFES---YFDQIIR 104
                G   +       R+  +T     S YR+S ++     +   S       F++I  
Sbjct: 106 HLLRMGEIERERLRIRSREINST-----STYRQSQYFQKYLTDYLASLGKKDIAFEEITE 160

Query: 105 KSGDFDYRKITTKHIRSGVESRKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163
             G         ++ ++ +   K+ + S   + L  +  L   AV  E +  NP  +VE 
Sbjct: 161 DFG---------RNYKAFLIRNKNFSTSQTNRCLCWLNRLLYLAVDNEILRTNPVENVEY 211

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHL--- 217
            K+     +  T+E+M++  +      +    R AF F  ++GL  +D  +    H+   
Sbjct: 212 EKKTAPKHKYVTREEMKRILAMPLNEGRAELGRRAFIFSYFTGLAYADIKQLHPCHIGTT 271

Query: 218 --QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET--FFINNDKQKMNATQFSIWF 273
                   I  +KTG    + L     ++LA+          F        +        
Sbjct: 272 AEGRRFIRISRKKTGVEAFIPLHPIAEQILALYNTTDMHSPVFPL-----PSRDSIWHEI 326

Query: 274 KAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +      G   + S H  R     +      +   +    G   +   + Y +
Sbjct: 327 REIGVILGRHDDLSYHQARHGFGVLLISESVSIESIAKMMGHSNISTTQGYAR 379


>gi|322835234|ref|YP_004215260.1| lambda integrase [Rahnella sp. Y9602]
 gi|321170435|gb|ADW76133.1| lambda integrase [Rahnella sp. Y9602]
          Length = 374

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 50/354 (14%), Positives = 105/354 (29%), Gaps = 44/354 (12%)

Query: 9   PFVTKERT-RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSA--------LTGSTPKRE 59
           P ++     R  K+ + ++     +      +E       + A        +      R 
Sbjct: 12  PGLSCYMDARTNKVYWRYKHPATGKFHGLGDNEEEAKAIAIDANMQLNQRKMANLLRVRN 71

Query: 60  YINSPRKKPTTLKWLISEYRKS----AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT 115
            I+    K  T    + +YR         G +  ++    E     +I   G     ++ 
Sbjct: 72  EISREVNKGITTNAWVDKYRAIQLERVKAGEIKPDTAKLREPSLRALISHCGIKPLSEVG 131

Query: 116 TKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAI--NPCLSVERPKRKTEGI 171
            + I   ++    K     A    +++  +FK A     V    NP  + ++P+ K    
Sbjct: 132 ARDIAGILDIYIEKGQGRMAQMVRSNLSDVFKEAQHAGEVPAGYNPAKATKQPRAKVSRQ 191

Query: 172 RPWTKEDMQQFK-SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
           R  + ++ +    +  +       A    L +G R  D  +     + ++   +  QKTG
Sbjct: 192 R-LSFDEWKAIYSAALTLPVHIPRAMLLALITGQRIGDISKLKFTDIWDDKLHVVQQKTG 250

Query: 231 TIITVELP---DGFMKLLAMTPIGKETFFIN-------------NDKQKMNATQFSIWFK 274
             + + L    +     L           ++                 ++  +  S  F 
Sbjct: 251 AKVAIPLSLKCEALGLSLQDVIAECRDSVLSQWILHHHRSRRNCTRGGQITKSTLSKGFA 310

Query: 275 AKATKAGV------NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
               K+G+        + H  R  S  +  + G          G K     E Y
Sbjct: 311 EARDKSGLLWEGENPPTFHEQRSLSERLFREQGINT---QVLLGHKNSQMTEKY 361


>gi|325497855|gb|EGC95714.1| phage integrase family site specific recombinase [Escherichia
           fergusonii ECD227]
          Length = 386

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 46/275 (16%), Positives = 94/275 (34%), Gaps = 26/275 (9%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
           K +IS +        L+  +        D +  +    ++     + +R G    ++ P 
Sbjct: 80  KSIISFWMLHFRETILSDITTEKIMEAVDGMENRRHRLNWEMSRDRCLRLGKPVPEYKPK 139

Query: 132 SAI-----QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            A      + L  +R +   AV   ++   P   +  P+ K   IR  T+E+ ++  +  
Sbjct: 140 LASKGTKTRHLAILRAILNMAVEWGWLDRAP--KISTPRVKNGRIRWLTEEESKRLFAEI 197

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGFM 242
           +    P + F     +GLR S+        +  +           K G  I V L +   
Sbjct: 198 APHFFPVVMFAIT--TGLRRSNVTDLEWSQVDLDKKMAWMHPDETKAGNAIGVPLNETAC 255

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFS------------IWFKAKATKAGV-NKSAHGV 289
           ++L       + +   + K    +                  +K    +AG+ N   H +
Sbjct: 256 QILRKQQGLHKRWVFVHTKPAYRSDGTKTAAVRKMRTDSNKAWKGALKRAGISNFRFHDL 315

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           R   A+    +G +   L    GW+T++  + Y  
Sbjct: 316 RHTWASWLVQSGVSLLALKEMGGWETLEMVQRYAH 350


>gi|323487258|ref|ZP_08092561.1| hypothetical protein HMPREF9474_04312 [Clostridium symbiosum
           WAL-14163]
 gi|323399484|gb|EGA91879.1| hypothetical protein HMPREF9474_04312 [Clostridium symbiosum
           WAL-14163]
          Length = 344

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 44/268 (16%), Positives = 84/268 (31%), Gaps = 22/268 (8%)

Query: 90  NSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES----RKHTPSSAIQFLTSMRVLFK 145
           ++   +      ++  +G    R I  KH+   +      +K    +    + S+R  FK
Sbjct: 79  STIKQYGYEIKNLLLYAG-TGIRDIREKHVIGYLTRGKVQKKWKDKTYNSKVRSLRAFFK 137

Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLR 205
           WA   + +  +P   ++  K +       T E  + F+    +  +     + L  SG R
Sbjct: 138 WAYEYDVITTDPMKRIKETKEEYRMGSILTPEQREIFR-CCCKNERELALVDLLYSSGGR 196

Query: 206 CSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKL----LAMTPIGKETFFINN 259
            S+  +       L N   +I   K      +             L       +  F++ 
Sbjct: 197 VSEIIQLNRDSIDLSNRRVNI-VGKGRKEREIRFSAQAKVHIEGYLRSRKDDSQALFVSQ 255

Query: 260 --DKQKMNATQFSIWFK----AKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGW 313
               ++++        K          G+  S H  R+   T   + GA A  +    G 
Sbjct: 256 KAPHKRLSDDGVRYILKTIQSRDVRLKGLQISPHTFRRTCGTDMINRGAPAELVQKKLGH 315

Query: 314 KTVDQA-ETYTKGADRIRLGIKNSRRIS 340
             VD   + Y K +          RR  
Sbjct: 316 TKVDTTLQCYAKISQEA--ARDAERRYG 341


>gi|315607167|ref|ZP_07882171.1| integrase [Prevotella buccae ATCC 33574]
 gi|315251221|gb|EFU31206.1| integrase [Prevotella buccae ATCC 33574]
          Length = 409

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/203 (18%), Positives = 65/203 (32%), Gaps = 17/203 (8%)

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-----SEGSQPRL 194
           ++ + + A R+    I     V+  K   +  +   +   ++ K+        E    R 
Sbjct: 192 LKTVCRLAYREGLADILLFDKVKISKGNKKLPKALDRGAFEKLKTLHLEDLEEEMETARD 251

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVELPDGFMKLLAMTP 249
            F F  Y+G    D       HL  +           QKTG    V+L    + L+    
Sbjct: 252 IFLFACYTGAAYCDLMELDKSHLVRDDEGSLWLKFNRQKTGVPCRVKLLPEAIWLMEKLH 311

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS-ADAGATAHE 306
             +    +      M    +  + KA   +AG+    + H  R   AT+   + G     
Sbjct: 312 SDERETLL----PFMGYATYQSYLKALRLRAGISFPFTTHTARHTFATLITLEQGVPIET 367

Query: 307 LMATYGWKTVDQAETYTKGADRI 329
           +    G   V   E Y K   R 
Sbjct: 368 VSKMLGHSNVSMTERYAKVTPRK 390


>gi|265763793|ref|ZP_06092361.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|263256401|gb|EEZ27747.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
          Length = 387

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 47/281 (16%), Positives = 99/281 (35%), Gaps = 28/281 (9%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           +    ++ Y K+     L + +    +S   +         + ++T   +R  +   K T
Sbjct: 103 SFHDFVASYMKTYS-RRLEIGTFRHHKSCMRKFKEYCEGLQFHELTEDFLRDYLIYMKKT 161

Query: 130 PSSAI----QFLTSMRVLFKWAVRQEYVAINPCL--SVERPKRKTEGIRPWTKEDMQQFK 183
             +A     + L+++++    A+++ Y+  +P     V+R K   +     T+E++ +F 
Sbjct: 162 LCNADSTAQRNLSTIKIYVSAAIKKGYMENDPFKDFGVKRIKSNID---YLTEEELIKFI 218

Query: 184 S-FWSEGSQPRLA-----FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK----TGTII 233
           S ++      RL      F F+ ++ L  SD+    ++ + N I +    K        I
Sbjct: 219 SLYYDRRLPERLERTLGFFLFMCFTSLHISDARHVCLEQINNGILTYYRIKNRNCKPEAI 278

Query: 234 TVELPDGFMKLLAMT--PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289
            + L     K++        +   F +           +   K  A+   + K  SA   
Sbjct: 279 KIPLSIPAFKIIEELQGKRKEGHLFTSLQ----CDQVVNRQIKEIASILEIKKKVSAKTG 334

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
           R   ATI          L    G   + +   Y    D  +
Sbjct: 335 RHTFATIFLKKTKDVATLQKLLGHSNLKETMIYAHVLDESK 375


>gi|302875302|ref|YP_003843935.1| integrase family protein [Clostridium cellulovorans 743B]
 gi|307688153|ref|ZP_07630599.1| integrase family protein [Clostridium cellulovorans 743B]
 gi|302578159|gb|ADL52171.1| integrase family protein [Clostridium cellulovorans 743B]
          Length = 391

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 53/326 (16%), Positives = 102/326 (31%), Gaps = 57/326 (17%)

Query: 67  KPTTLKWLISEYRKSAHWGS--LAVNSRISFESYFDQIIRKSGDFDYR-----KITTKHI 119
           + TTL  LI  +       S  +   +   +E  F   I  S  +  R      I  +  
Sbjct: 62  EKTTLGTLIKTWLYEVVRISNKIKPTTFSRYEGVFRNYIETSELYSLRLGTIKSIQIQRY 121

Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE-----RPKRKTE-GIRP 173
            + +     T SS       M+  F +AV   Y+  NPC   +       K +TE  +  
Sbjct: 122 YNNLYDSGKTTSSIKYLNKLMKQFFNYAVDGGYMLKNPCDGKKIVIPGEVKSETEDELEY 181

Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT---- 229
           ++ E++++ K   ++ S   L     L +GLR  +        +     +I  ++T    
Sbjct: 182 FSGEEIEKLKLAANDHSLKGLIL-VALGTGLRRGELLGMDWSDIDKENLTISIERTVIKT 240

Query: 230 ------GTII---------------TVELPDGFMKLLAMTPIGKETF------------- 255
                 G+ +               TV  P+  + +       ++ +             
Sbjct: 241 YIIDSDGSRVRKNIVQIPKTKTSIRTVSFPEKLLSIFEEVKAKQDEYKARFPESFAENEF 300

Query: 256 ---FINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATY 311
              F ++    +++T  S  +     K  + +K  H +R   AT     G     +    
Sbjct: 301 DFVFTSSTGNLLDSTNISHSWDNLLEKNNIPHKKFHALRHTFATQLFSKGIPTEVVSKLL 360

Query: 312 GWKTVD-QAETYTKGADRIRLGIKNS 336
           G        + Y       R+     
Sbjct: 361 GHSDPALTRKIYIHVIPEQRVSSIAI 386


>gi|167644210|ref|YP_001681873.1| site-specific tyrosine recombinase XerC [Caulobacter sp. K31]
 gi|167346640|gb|ABZ69375.1| integrase family protein [Caulobacter sp. K31]
          Length = 306

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 50/288 (17%), Positives = 97/288 (33%), Gaps = 33/288 (11%)

Query: 69  TTLKWLISEYRKSA-HWGSLAVNSRISFE----SYFDQIIRKSGD----FDYRKITTKHI 119
            T +  +S + +   H    +  +  ++     +Y + + R  G+     D   IT   +
Sbjct: 3   ATARAALSAWLEHLTHERRASPRTVRAYGDNVLAYLNFLERHRGEPQSVSDLGGITAAEL 62

Query: 120 RSGVESRKH-----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS-VERPKRKTEGIRP 173
           R+ +  R+      +P S  Q L+S+R   ++ +       N  +  V  P+ K    RP
Sbjct: 63  RAYLAFRREGENGLSPRSLSQSLSSIRAFHRY-LDHRLDTPNAAIGLVRGPRIKVGAPRP 121

Query: 174 WTKEDMQQFKSFWSEGS--------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225
            +++      +  S  S        +       L   GLR S+      +          
Sbjct: 122 VSEDQAHGLIAEISLDSDREDWEVARDEAVLTLLWGCGLRISEGLSLLRRDAPLAESLRI 181

Query: 226 TQKTGTIITVELPDGFMK----LLAMTP---IGKETFFINNDKQKMNATQFSIWFKAKAT 278
           T K G    V + D   +     LA  P      +  F       ++        +   +
Sbjct: 182 TGKGGKTRIVPVLDIVRERIDAYLAALPFALEPDDPLFRAKRGGPLSPRHVQATMQHLRS 241

Query: 279 KAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           + G+    + H +R   AT    AGA    +    G  ++   + YT+
Sbjct: 242 RLGLSDRATPHALRHSFATHLLGAGADLRSIQDLLGHASLSTTQRYTQ 289


>gi|60681762|ref|YP_211906.1| putative phage integrase [Bacteroides fragilis NCTC 9343]
 gi|60493196|emb|CAH07978.1| putative phage integrase [Bacteroides fragilis NCTC 9343]
          Length = 387

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 47/281 (16%), Positives = 99/281 (35%), Gaps = 28/281 (9%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           +    ++ Y K+     L + +    +S   +         + ++T   +R  +   K T
Sbjct: 103 SFHDFVASYMKTYS-RRLEIGTFRHHKSCMRKFKEYCEGLQFHELTEDFLRDYLIYMKKT 161

Query: 130 PSSAI----QFLTSMRVLFKWAVRQEYVAINPCL--SVERPKRKTEGIRPWTKEDMQQFK 183
             +A     + L+++++    A+++ Y+  +P     V+R K   +     T+E++ +F 
Sbjct: 162 LCNADSTAQRNLSTIKIYVSAAIKKGYMENDPFKDFGVKRIKSNID---YLTEEELIKFI 218

Query: 184 S-FWSEGSQPRLA-----FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK----TGTII 233
           S ++      RL      F F+ ++ L  SD+    ++ + N I +    K        I
Sbjct: 219 SLYYDRRLPERLERTLGFFLFMCFTSLHISDARHVCLEQINNGILTYYRIKNRNCKPEAI 278

Query: 234 TVELPDGFMKLLAMT--PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289
            + L     K++        +   F +           +   K  A+   + K  SA   
Sbjct: 279 KIPLSIPAFKIIEELQGKRKEGHLFTSLQ----CDQVVNRQIKEIASILEIKKKVSAKTG 334

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
           R   ATI          L    G   + +   Y    D  +
Sbjct: 335 RHTFATIFLKKTKDVATLQKLLGHSNLKETMIYAHVLDESK 375


>gi|219667494|ref|YP_002457929.1| integrase family protein [Desulfitobacterium hafniense DCB-2]
 gi|219537754|gb|ACL19493.1| integrase family protein [Desulfitobacterium hafniense DCB-2]
          Length = 317

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/286 (15%), Positives = 92/286 (32%), Gaps = 21/286 (7%)

Query: 59  EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFE---SYFDQIIR--KSGDFDYRK 113
           E +   + +  T   L   Y K     +L+  +   +E   + F++ I   +    +  +
Sbjct: 8   EKMIMSKGEDITFTELQKRYLKKCLVNNLSEYTLRFYEVSCNTFNKFIDLSQLMASEVNR 67

Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
               +    + +      +   ++  +  + K+ +    +           K   E  + 
Sbjct: 68  DLIDNYILYLRNTGVKAVTINTYIHGISPIIKYGMSLGLIEK---FGFNEIKTTEEIKQI 124

Query: 174 WTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQ 227
           +T  ++Q      +  S    +  +   FLL +G+R  +     ++ +   +    +   
Sbjct: 125 YTPHELQILLKKPNMKSFAEYRNWVIINFLLGTGVRALELRSIRIKDIDLKMSMLIVPRT 184

Query: 228 KTGTIITVELPDGFMKLL------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281
           K G    + +     K+L            ++  F N   Q +  T   I       K G
Sbjct: 185 KNGKQRYIPISKSLNKILTDYLDYRKAESEEDFLFCNEFGQYLPRTTLQIGITKYCKKRG 244

Query: 282 VNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           VNK S H  R   A +      +   L    G  ++ Q   Y   A
Sbjct: 245 VNKYSLHLFRHTFANMWIVNNGSLFILQKILGHASLKQVNHYANLA 290


>gi|332086087|gb|EGI91249.1| integrase [Shigella boydii 5216-82]
          Length = 312

 Score = 91.6 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 50/303 (16%), Positives = 99/303 (32%), Gaps = 16/303 (5%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87
             G+RIR  +  +S  +      L          NS  ++P ++  LI  + K   +   
Sbjct: 6   RKGKRIRKKFKTKSDAVLYERWVLAQQHNNEWKGNSIDRRPLSV--LIDLWWK---YHGQ 60

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTK---HIRSGVESRKHTPSSAIQFLTSMRVLF 144
            + S  +      ++     D    K+ T     +R     +   PS+  + + ++  +F
Sbjct: 61  LMRSGHNTHLKLLRLSEAMDDPCVHKLNTTMLTELRVYRIEQGIQPSTINREIGALSAMF 120

Query: 145 KWAVRQEY-VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203
              +   + +  NP   ++  K     +   +K +  Q     +E    RLA E LL +G
Sbjct: 121 TALISSGHFLNDNPVQGLKGMKVNEREMGYLSKSECVQLLDALAENPDERLAVEILLSTG 180

Query: 204 LRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK 263
            R  +      + + +   +    K     TV + +   +   +   G +  F   D   
Sbjct: 181 ARWGEVEALEQRRVLHCRITFSKTKNSKNRTVPISESLFE--KIKKRGGKLVFPTLD-YP 237

Query: 264 MNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           +         K  A      ++ H +R   A+     G     L    G   +     Y 
Sbjct: 238 LVRD----VIKTVAPDIPDGQAVHALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIYA 293

Query: 324 KGA 326
             A
Sbjct: 294 HLA 296


>gi|323946286|gb|EGB42318.1| phage integrase [Escherichia coli H120]
          Length = 335

 Score = 91.6 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 45/320 (14%), Positives = 89/320 (27%), Gaps = 39/320 (12%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87
            +G+R+R           A+ S       K+ ++     +   L  LI  +         
Sbjct: 9   RNGKRVR-KQFATKGEAIAFESFTMEEVNKKPWLGEKEDRRH-LSELIELWY---SLYGQ 63

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--------------TPSSA 133
            +       +    I    GD    ++T        E+R                 P + 
Sbjct: 64  TLADPKRLMAKLRIICNGLGDPIASELTAGEFTKYREARLKGEVRNEDGTLMSPVKPRTV 123

Query: 134 IQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
                ++  +F    +   + A NP   +   K     +   T E++++     ++   P
Sbjct: 124 NLEQRNLSSVFGTLKKLGHWSAPNPLAGLPTFKIAEGELAFLTPEEIKRLLDACADSQSP 183

Query: 193 RLAF--EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250
            L    +  L +G R S++       +     +    K     TV +     + L     
Sbjct: 184 SLLMIAKICLATGARWSEAENLQSHQVSKYRITYTKTKGKKNRTVPISKDLYEELPK--- 240

Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGV----NKSAHGVRKFSATISADAGATAHE 306
                   N  +          F+    +AG+     +  H +R   A+     G     
Sbjct: 241 --------NRGKLFTP--CRKAFERAVKRAGIELPEGQCTHVLRHTFASHFMMNGGNILV 290

Query: 307 LMATYGWKTVDQAETYTKGA 326
           L    G   +     Y   A
Sbjct: 291 LRDILGHVDIKMTMIYAHFA 310


>gi|228963001|ref|ZP_04124209.1| Phage integrase [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|228796655|gb|EEM44056.1| Phage integrase [Bacillus thuringiensis serovar pakistani str.
           T13001]
          Length = 385

 Score = 91.6 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 48/354 (13%), Positives = 101/354 (28%), Gaps = 48/354 (13%)

Query: 13  KERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
             R R+ K  Y  R     + +               A      K    ++ +    T  
Sbjct: 3   SFRKRNDKWEYRIRYKEMGKYKETSKGGFKTKKEAQLAAAKIEEKLVNGSNIQDGKITFN 62

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
             + E+      G++A  + + +E      I+   G+   + +T    +  + +     S
Sbjct: 63  EYLYEWLNVFKKGNVAPRTYMVYEKNIRLHILPVFGELKLKDLTRIKYQKFINNLLEKYS 122

Query: 132 SAIQFLTSMRVLFKWAVR-----QEYVAINPCLSVE----RPKRKTEGIRPWTKEDMQQF 182
              + + ++ V    A+         +  NP   ++    R   K + I+ +  +++ QF
Sbjct: 123 K--KTVETINVTMHHALDTAVNELGILEKNPTTKIKLRTTRVSSKNDDIKCYDIDELHQF 180

Query: 183 KSF---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-----GTIIT 234
            ++      G +    F FL  +GLR  +      + +      +   KT          
Sbjct: 181 LTYILNEKGGFKYFSLFMFLSRTGLRIGECLALQWEDIDFEEQKLFINKTLITTKRNEKI 240

Query: 235 VELPDGFMKLLAMTPIGKETF---------------------------FINNDKQKMNAT 267
           +  P           +   T                            F + D   M   
Sbjct: 241 LFGPPKNRSSKRTISLDSSTISHLRKMKMEQNKNTLKNGKYYKEYNFVFTHEDNSCMLHP 300

Query: 268 QFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
               + +    K  +   + HG R   A     +GA    +    G  ++D   
Sbjct: 301 ATLKFLQQACKKGNLKYITLHGFRHTHAVHLLQSGANLKYVSERLGHSSIDMTA 354


>gi|15801483|ref|NP_287500.1| putative integrase for prophage CP-933O [Escherichia coli O157:H7
           EDL933]
 gi|15831011|ref|NP_309784.1| integrase [Escherichia coli O157:H7 str. Sakai]
 gi|91210482|ref|YP_540468.1| putative prophage CP-933O integrase [Escherichia coli UTI89]
 gi|117623473|ref|YP_852386.1| putative integrase for prophage CP-933O [Escherichia coli APEC O1]
 gi|168759069|ref|ZP_02784076.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC4401]
 gi|168771719|ref|ZP_02796726.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC4486]
 gi|208808036|ref|ZP_03250373.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC4206]
 gi|208815047|ref|ZP_03256226.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC4045]
 gi|208822782|ref|ZP_03263101.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC4042]
 gi|209398107|ref|YP_002270188.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC4115]
 gi|217328229|ref|ZP_03444311.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. TW14588]
 gi|218558186|ref|YP_002391099.1| phage integrase [Escherichia coli S88]
 gi|227888115|ref|ZP_04005920.1| integrase for prophage CP-933O [Escherichia coli 83972]
 gi|237705223|ref|ZP_04535704.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|254792727|ref|YP_003077564.1| putative integrase for prophage CP-933O [Escherichia coli O157:H7
           str. TW14359]
 gi|260843548|ref|YP_003221326.1| integrase [Escherichia coli O103:H2 str. 12009]
 gi|260854916|ref|YP_003228807.1| integrase [Escherichia coli O26:H11 str. 11368]
 gi|260868017|ref|YP_003234419.1| putative integrase [Escherichia coli O111:H- str. 11128]
 gi|261257240|ref|ZP_05949773.1| putative integrase [Escherichia coli O157:H7 str. FRIK966]
 gi|300936980|ref|ZP_07151856.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 21-1]
 gi|309794350|ref|ZP_07688774.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 145-7]
 gi|312966504|ref|ZP_07780726.1| integrase [Escherichia coli 2362-75]
 gi|12514982|gb|AAG56112.1|AE005343_2 putative integrase for prophage CP-933O [Escherichia coli O157:H7
           str. EDL933]
 gi|13361222|dbj|BAB35180.1| integrase [Escherichia coli O157:H7 str. Sakai]
 gi|91072056|gb|ABE06937.1| putative integrase for prophage CP-933O [Escherichia coli UTI89]
 gi|115512597|gb|ABJ00672.1| putative integrase for prophage CP-933O [Escherichia coli APEC O1]
 gi|189354273|gb|EDU72692.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC4401]
 gi|189359590|gb|EDU78009.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC4486]
 gi|208727837|gb|EDZ77438.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC4206]
 gi|208731695|gb|EDZ80383.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC4045]
 gi|208738267|gb|EDZ85950.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC4042]
 gi|209159507|gb|ACI36940.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC4115]
 gi|217318656|gb|EEC27082.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. TW14588]
 gi|218364955|emb|CAR02652.1| phage integrase [Escherichia coli S88]
 gi|226899980|gb|EEH86239.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|227834961|gb|EEJ45427.1| integrase for prophage CP-933O [Escherichia coli 83972]
 gi|254592127|gb|ACT71488.1| putative integrase for prophage CP-933O [Escherichia coli O157:H7
           str. TW14359]
 gi|257753565|dbj|BAI25067.1| integrase [Escherichia coli O26:H11 str. 11368]
 gi|257758695|dbj|BAI30192.1| integrase [Escherichia coli O103:H2 str. 12009]
 gi|257764373|dbj|BAI35868.1| putative integrase [Escherichia coli O111:H- str. 11128]
 gi|284921066|emb|CBG34131.1| integrase [Escherichia coli 042]
 gi|294490317|gb|ADE89073.1| site-specific recombinase, phage integrase family [Escherichia coli
           IHE3034]
 gi|300457923|gb|EFK21416.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 21-1]
 gi|307552922|gb|ADN45697.1| prophage integrase [Escherichia coli ABU 83972]
 gi|308122255|gb|EFO59517.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 145-7]
 gi|312288957|gb|EFR16855.1| integrase [Escherichia coli 2362-75]
 gi|315288649|gb|EFU48047.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 110-3]
 gi|315295209|gb|EFU54544.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 153-1]
 gi|320188049|gb|EFW62716.1| Integrase [Escherichia coli O157:H7 str. EC1212]
 gi|320637406|gb|EFX07213.1| putative integrase [Escherichia coli O157:H7 str. G5101]
 gi|320642715|gb|EFX11936.1| putative integrase [Escherichia coli O157:H- str. 493-89]
 gi|320648068|gb|EFX16748.1| putative integrase [Escherichia coli O157:H- str. H 2687]
 gi|320664654|gb|EFX31805.1| putative integrase [Escherichia coli O157:H7 str. LSU-61]
 gi|323178030|gb|EFZ63612.1| integrase [Escherichia coli 1180]
 gi|323949626|gb|EGB45512.1| bacteriophage lambda integrase domain-containing protein
           [Escherichia coli H252]
 gi|323953725|gb|EGB49544.1| bacteriophage lambda integrase domain-containing protein
           [Escherichia coli H263]
 gi|323962628|gb|EGB58207.1| bacteriophage lambda integrase domain-containing protein
           [Escherichia coli H489]
 gi|326344477|gb|EGD68228.1| Integrase [Escherichia coli O157:H7 str. 1044]
 gi|326346343|gb|EGD70080.1| Integrase [Escherichia coli O157:H7 str. 1125]
          Length = 376

 Score = 91.6 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 60/377 (15%), Positives = 115/377 (30%), Gaps = 64/377 (16%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKR-------- 58
           L P+  K   R+ K+ + +R     +       +        +       ++        
Sbjct: 14  LSPYFDK---RNNKVYWRYRHPITGKNHGLGSIDQKLAETIAAEANSRLARQQMEQMLSL 70

Query: 59  -EYINSPRKKPTTLKWLISEYRKS----AHWGSLAVNSRISFESYFDQIIRKSGDFDYRK 113
            E I S     +T+   ++ YRK        G + +N+     +       + G      
Sbjct: 71  QEKIISDTGGSSTVTIFLNNYRKIQQERYENGEIKLNTLKQKAAPLRVFDERFGTRPLDA 130

Query: 114 ITTKHIRSGVESRKHTPSSAIQ--FLTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTE 169
           IT K + S +E  K    + +   F   +  +F+ A +   V    NP  S ++P+    
Sbjct: 131 ITVKDVVSVLEEYKARGHNRMGQIFRKVLIDVFREAQQTGDVPPGFNPAESAKKPQV-RI 189

Query: 170 GIRPWTKEDMQQ-FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
             +  T ++    + +   +G   +      L +G R SD C+     +++    ++ QK
Sbjct: 190 SRQRLTFDEWMMIYNAAEKDGYFLQRGMLLALMTGQRLSDICKMQFSDIRDGYLHVEQQK 249

Query: 229 TGTIITVE-----------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265
           TGT I +                        L    +         K           + 
Sbjct: 250 TGTRIAIPLALRCDKLNLTLDDVVSSCRDCVLSPWLLHHHHAKGTAK-------RGGMVK 302

Query: 266 ATQFSIWFKAKA-------TKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
               ++ FK             G   S H  R  S  +  + G     L    G      
Sbjct: 303 PATLTVAFKKARDSVDYNWRANGTPPSFHEQRSLSERLFREQGVDTKIL---LGHSNQKM 359

Query: 319 AETY--TKGADRIRLGI 333
            + Y   +G +  +L I
Sbjct: 360 TDIYNDARGKEWKKLVI 376


>gi|94268395|ref|ZP_01291163.1| Phage integrase [delta proteobacterium MLMS-1]
 gi|93451622|gb|EAT02417.1| Phage integrase [delta proteobacterium MLMS-1]
          Length = 177

 Score = 91.6 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 50/158 (31%), Gaps = 23/158 (14%)

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFMKLLAM- 247
           ++ R   E L  +GLR S+     +  L      ++    G     V +    +  +   
Sbjct: 1   ARDRAILELLYATGLRVSELAGLDLAQLDLAXGMVRVMGKGNKERLVPMGTAAVAAIEAY 60

Query: 248 -------------------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286
                                 G +   +N+   ++ +       K  A +AG+    S 
Sbjct: 61  LFQRQVLLRQTAGQQKEGKKARGADPLLVNSRGGRLTSRSIERLVKMYAERAGIAARVSP 120

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           H +R   AT   + GA    +    G  ++   + YT 
Sbjct: 121 HALRHSFATHLLEMGADLRVVQELLGHASLSTTQRYTH 158


>gi|306822058|ref|ZP_07455442.1| phage integrase [Bifidobacterium dentium ATCC 27679]
 gi|304554658|gb|EFM42561.1| phage integrase [Bifidobacterium dentium ATCC 27679]
          Length = 273

 Score = 91.6 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/270 (13%), Positives = 78/270 (28%), Gaps = 14/270 (5%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
               I+ +  S      +  +  +       +    G      +    +     S++  P
Sbjct: 10  WAEYINGWLDSLKAAGYSTATLHTRRCQMTAMGNALGGSPL-DVGGNGLVGYFASKEWKP 68

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
            +      +    F+W    +    +P   +   +R     RP   + +    +      
Sbjct: 69  ETRKSARNATVSFFRWIRAHDLRDDDPSQELPSVRRPQTHPRPCPDKVI--LSALSKAND 126

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQN---NIFSIKTQKTGTIITVELPDGFMKLLAM 247
           + +L        GLR S+        + +       I   K      V LPD    L+  
Sbjct: 127 EEQLMLRLGAECGLRRSEIASVSSTDVMDDLVGRSLIVRGKNDKQRLVPLPDDLADLITA 186

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHEL 307
                +  F    +  + A+                 + H +R   AT + +A      +
Sbjct: 187 ---HHDYLFPGRWQGHVEASYIGKHLSRLLD----GWTTHSLRHRYATRAYEATHDLLLV 239

Query: 308 MATYGWKTVDQAETYTKGAD-RIRLGIKNS 336
               G  +V+  + Y    D R+R G++  
Sbjct: 240 SKLLGHASVETTQRYVAMPDERLRAGLEAV 269


>gi|218695473|ref|YP_002403140.1| Integrase [Escherichia coli 55989]
 gi|218352205|emb|CAU97951.1| Integrase [Escherichia coli 55989]
          Length = 333

 Score = 91.6 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 42/311 (13%), Positives = 90/311 (28%), Gaps = 30/311 (9%)

Query: 30  GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAV 89
           G+RIR  +  +S  +      +           S  +    L  LI+ + +     +L+ 
Sbjct: 22  GKRIRKQFATKSEALSYERRIMNSRVGDEFQDGSGPR----LSELIARWFEMYG-KTLSS 76

Query: 90  NSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-----------KHTPSSAIQFLT 138
                 +   + I  + GD    +       +  E R           K + ++  +  +
Sbjct: 77  G--AERKVKLEAICSRLGDPFASQFDKNMFATYRERRLSGEWNPKGKKKLSEATVNREQS 134

Query: 139 SMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL--A 195
            +  +F    R   +   NP   + + + + + +     +++++      E     L   
Sbjct: 135 YLHAVFAELKRLGEWSGENPLTGIRKFREEEKELAFLYVDEIERLLIACDESRNKDLGVV 194

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF 255
               L +G R S++       +     +    K     TV +      +L   P  +   
Sbjct: 195 VRIGLATGARWSEAEGLKQSQVLPGRITFVKTKGKKNRTVPISPQLQAIL---PKKRGAL 251

Query: 256 FINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKT 315
           F            F    K    +    +  H +R   A+     G     L    G   
Sbjct: 252 F------SPCYEAFDAAIKRAKIELPDGQLTHVLRHTFASHFMMRGGNILVLQKILGHSD 305

Query: 316 VDQAETYTKGA 326
           +     Y   A
Sbjct: 306 IKMTMRYAHFA 316


>gi|138895711|ref|YP_001126164.1| putative integrase/recombinase XerD [Geobacillus
           thermodenitrificans NG80-2]
 gi|134267224|gb|ABO67419.1| Putative integrase/recombinase XerD [Geobacillus
           thermodenitrificans NG80-2]
          Length = 304

 Score = 91.6 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 42/290 (14%), Positives = 86/290 (29%), Gaps = 39/290 (13%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----KHT 129
           +++EY         + N+ IS+ +  +             +T+  IR  ++      +  
Sbjct: 1   MLNEYVDYLREKGASPNTIISYTNDLNIFFNDLHIRPSDYVTSADIRKWIQQMLNPIEGK 60

Query: 130 P---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP---WTKEDMQQFK 183
           P   S+  + L S+R  + WAV    +  NP   ++  K   E        T+E+ +   
Sbjct: 61  PLAISTINRRLNSLRSFYAWAVEHHKIEQNPMKDIQDLKSADEDYEKIMWLTEEEFEDLL 120

Query: 184 SF-------------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
                            +  + R     L Y+GLR  +     +  L   +  I+    G
Sbjct: 121 HRMRKKPVRSRGVDPEEKYRRDRAVVYLLTYAGLRVEELSNLKLTDLDLEMKRIRIVGKG 180

Query: 231 TII-TVEL-----------PDGFMKLLAMTP--IGKETFFINNDKQKMNATQFSIWFKAK 276
             + TV +            +   ++    P        F +    K +        ++ 
Sbjct: 181 MKVRTVPISNILLAELEDWLEFRAEMAKKKPHVAASPYVFYSQRSPKFSVRGIQRMIESY 240

Query: 277 ATKAGVNKSAHGVRKFSATISADA-GATAHELMATYGWKTVDQAETYTKG 325
           +       + H  R         A      ++    G   +     Y K 
Sbjct: 241 SLP-NKKLTPHMFRHTFCKWMLKATNNDIEKVRRLAGHSNIATTSRYLKD 289


>gi|21674453|ref|NP_662518.1| phage/XerD family site-specific recombinase [Chlorobium tepidum
           TLS]
 gi|34222894|sp|Q8KBZ5|XERC_CHLTE RecName: Full=Tyrosine recombinase xerC
 gi|21647640|gb|AAM72860.1| site-specific recombinase, phage/XerD family [Chlorobium tepidum
           TLS]
          Length = 336

 Score = 91.6 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 40/287 (13%), Positives = 82/287 (28%), Gaps = 46/287 (16%)

Query: 90  NSRISFESYFDQIIRKSGDFDYRKITT--------KHIRSGVESRKHTPSSAIQFLTSMR 141
                   +F+ +  +SG  +   +          +     +      P S  + L S++
Sbjct: 40  AYTTDLIQFFEFLTDESGHQEMSAVDPELVEVADVRRFMGDLLDSGIKPRSIARKLASVK 99

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW------SEG------ 189
             +++ +    +  +P   V  P+ + +     ++E+  +           S G      
Sbjct: 100 SFYRFLLDTGKIERSPLSLVLTPRLERKIPDFLSEEEASRLFDQLVLSDQESVGPEQGQK 159

Query: 190 --------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGTIITVELPDG 240
                   ++ R   E L   GLR S+        +   + F   T K      V   + 
Sbjct: 160 AAVQRFELARDRAVLELLYGCGLRLSEVTGLENADVDLVHGFLKVTGKGRKQRIVPFGEP 219

Query: 241 FMKLLAM--------------TPIGKETFFINNDKQKMNATQFSIWFKAK--ATKAGVNK 284
             + L                        F+    +++         K           K
Sbjct: 220 AAEALRNYFEVRRNFFRILKEGAGETSKVFVTAKGRQIYPMLVQRMTKRYLSPVTESARK 279

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330
           + H +R   AT   + GA    +    G   +   E YT    +R+R
Sbjct: 280 NPHMLRHTFATHMLNGGADLKSVSEMLGHSNLTTTELYTHVTFNRLR 326


>gi|116625064|ref|YP_827220.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116228226|gb|ABJ86935.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 406

 Score = 91.6 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 58/361 (16%), Positives = 110/361 (30%), Gaps = 46/361 (12%)

Query: 26  RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG 85
           R   G+R R+     +         LT    K++          TL+  ++E+ +     
Sbjct: 27  RDREGKRHRI--TRSAATQNEARKLLTKLKGKQDSHTLIIGGRGTLRDWLNEWLELFIKP 84

Query: 86  SLAVNSRISFESYFD-QIIRKSGDFDYRKI--TTKHIRSGVESRK-HTPSSAIQFLTS-M 140
           + A  +  S+       +    G     ++    +  ++   S          Q L + +
Sbjct: 85  NRAPKTYKSYHDLLKQHVPENVGSIPLSRVAQQPETFQALFVSIAQDGLGRTSQLLRAVL 144

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200
           R     AV+ + +  NP L  +     +     ++ E  +QF    +EG +    F   L
Sbjct: 145 RSSLNRAVKLKRLESNPILGTDAVGFVSGETAVFSGEQGKQFLKT-AEGERLGALFVTAL 203

Query: 201 YSGLRCSDSCRAGVQHLQ--NNIFSIKTQ-------------------KTGTIITVELPD 239
             GLR  +      + L        ++ Q                   K G+  T+ + +
Sbjct: 204 SLGLRKGELTGLREEDLDLEGRTIEVRRQLQWIKLPGDEEGRWVERAPKKGSQRTLPITE 263

Query: 240 GF------------MKLLAMTPI--GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284
                          + LA           F++ +   ++    S  F      AGV + 
Sbjct: 264 TIYRFVIRHLAQRNAEALAAGESWKDSGYLFVSPNGAPLHERNISEAFHLACDHAGVPRI 323

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
             H  R    T+    GA    +    G   +     YT     I +      R+ S+ D
Sbjct: 324 RFHDTRHSCGTLLHLQGADPFIIQKVLGHSQLSTTRRYTHTP--IEVTRPALARLESLFD 381

Query: 345 S 345
           S
Sbjct: 382 S 382


>gi|325972150|ref|YP_004248341.1| integrase [Spirochaeta sp. Buddy]
 gi|324027388|gb|ADY14147.1| integrase domain protein SAM domain protein [Spirochaeta sp. Buddy]
          Length = 422

 Score = 91.6 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 50/254 (19%), Positives = 79/254 (31%), Gaps = 29/254 (11%)

Query: 101 QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSM---RVLFKWAVRQEYVAINP 157
              +         IT   +R    S K    +A      M   +V F WA ++ Y+  NP
Sbjct: 152 YWKKYFKKRTLSSITRDELREFSLSLKKKGLAAATINKVMLAGKVAFAWAYQEGYIHTNP 211

Query: 158 CLSVERPKRKTEGIRPWTKEDMQQ-FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216
              ++    K +     T E+    F+  W E  +  +        GLR  +      + 
Sbjct: 212 SEGLKNFVGKAKERGILTDEENTALFEQEWKE-ERSYVGNLVASTCGLRSGEVLGLKAED 270

Query: 217 LQNNIFSIK----------TQKTGTIITVELPDG----FMKLLAMTPIGKETFFINND-K 261
           +  +   I+          T K G    V L        + L+   P      F ++   
Sbjct: 271 IGLDRLFIRHSYSPLDGLKTPKNGEQRQVPLLPEVREKLLSLVEKNPWDDGFIFYSDKAG 330

Query: 262 QKMNATQFSIWFKAKATKAGVNKS--------AHGVRKFSATISADAGATAHELMATYGW 313
           Q M+    +        K G++K          H  R   A   AD    A  L    G 
Sbjct: 331 QPMDHKFLNDGLMEAMIKIGISKKEKEERNIVFHSWRHRYAAKMADL-VDARSLGLATGH 389

Query: 314 KTVDQAETYTKGAD 327
           KT+   E Y   A+
Sbjct: 390 KTMAMLEHYAAHAN 403


>gi|281424487|ref|ZP_06255400.1| integrase [Prevotella oris F0302]
 gi|281401324|gb|EFB32155.1| integrase [Prevotella oris F0302]
          Length = 436

 Score = 91.6 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 60/349 (17%), Positives = 105/349 (30%), Gaps = 67/349 (19%)

Query: 38  PHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK----------------WLI-SEYRK 80
           P  S    AY      S P+ + + +P +K  TL                 W    E+ K
Sbjct: 90  PTTSQLRDAYKK---QSAPQTQTVATPLEKDGTLSVQQVDIKAEKAKSKSLWKCFDEFVK 146

Query: 81  -SAHWGSLAVNSR---ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF 136
            +         +     +  ++     +K     + +    +    +       S+  + 
Sbjct: 147 VNGKLNDWTPATHEKFAALRNHLTGFDKKLTFDKFDEDGISNFIDYLGKNGMKNSTINKQ 206

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP--WTKEDMQQFKSFWSEGSQP-- 192
           L  +R   +W   ++Y   N      +PK K    R    T E++   +++         
Sbjct: 207 LGFLRWFLRWCYEKDY-HTNRTFEYYKPKLKNASKRVVFLTAEELSILEAYKIPAKHVAL 265

Query: 193 ---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM-- 247
              R  F F  Y+GLR SD+C      + N    I T KT   I +E+      +L    
Sbjct: 266 GPIRDVFLFTCYTGLRYSDACNLTWDDIHNGKIEIVTVKTSDRILIEINSKAQAILDKYA 325

Query: 248 ---TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA------------------ 286
               P  K    I+N K   +              AG+++S                   
Sbjct: 326 DVHLPDKKVLPVISNQKMNKHLHTL-------CKLAGIDESIKTTHYEGNKRIDKVQPKY 378

Query: 287 -----HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
                H  R+     +   G     +M   G       + Y   AD ++
Sbjct: 379 ELIGTHCGRRTFICTALAKGIPPSVVMKWTGHSDYKAMKPYIDIADEVK 427


>gi|253688998|ref|YP_003018188.1| integrase family protein [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251755576|gb|ACT13652.1| integrase family protein [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 335

 Score = 91.6 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 42/273 (15%), Positives = 79/273 (28%), Gaps = 34/273 (12%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--- 126
           TLK L+  +          ++S  S  +    I  + GD     +         E R   
Sbjct: 57  TLKDLVQRWY---DMHGKTLSSGDSRYTKLLAICERLGDPFAIDVDKNMFAVYRERRLKG 113

Query: 127 ----KHTP----SSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKE 177
               K       ++  +  + +R +F    R   +   NP   + + K   + +     E
Sbjct: 114 EWNPKGKAVLKEATVNREYSYLRAVFSELKRMGEWDKENPLDGIRQFKEGDQELAFLYPE 173

Query: 178 DMQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
           ++++  +   E     L       L +G R S++       +  N  +    K     TV
Sbjct: 174 EIKRLLAACDESDNKDLGIIVRLCLATGARWSEAQDLKQSQILPNRVTFTKTKGNKNRTV 233

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA----HGVRK 291
            + +              +               S  FK    +AG+   +    H +R 
Sbjct: 234 PISEKMR-----------SLLPKKRGALFTPAYES--FKYAIKRAGIELPSGQLTHVLRH 280

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK 324
             A+     G     L    G  T+     Y  
Sbjct: 281 SFASHFMMNGGNILVLQQILGHSTITMTMRYAH 313


>gi|154496779|ref|ZP_02035475.1| hypothetical protein BACCAP_01072 [Bacteroides capillosus ATCC
           29799]
 gi|150274031|gb|EDN01131.1| hypothetical protein BACCAP_01072 [Bacteroides capillosus ATCC
           29799]
          Length = 349

 Score = 91.6 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 48/308 (15%), Positives = 99/308 (32%), Gaps = 50/308 (16%)

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD----QIIRKSGDFDYRKITTKH 118
              K+  T    I EY        L   +  S+E         I  + G     +IT ++
Sbjct: 19  RKAKQEKTFDTCIDEYLYYCQSRRLRPKTMASYEQTLRLFERWIRDQEGLERPSEITEQN 78

Query: 119 IRSGV-----------------------ESRKH--TP---SSAIQFLTSMRVLFKWAVRQ 150
           IR  +                       E R+   TP   ++   +L ++R  F+W   +
Sbjct: 79  IRHYICDLQERGKYSFYICDRAKETNLPERRRDYRTPISVTTINNYLRNLRAFFRW-YEE 137

Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRC 206
                NP   V+    + +        ++++      +     ++ R     +L +G+R 
Sbjct: 138 CSGGKNPMAKVKLLSNERKPREYLEDAEVKKLLDSLDKSYFSENRDRTIILLILDTGMRL 197

Query: 207 SDSCRAGVQHLQ--NNIFSIKTQKTGTI------ITVELPDGFMKLLAMTP--IGKETFF 256
            +  +  ++++     + SI  + T          +++      + L      +     F
Sbjct: 198 GECLKLSMEYIDMHERVISIPAELTKGRKARCVYFSIKTAKALQQWLRFKDRYVESSYIF 257

Query: 257 INND-KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGW 313
              +    +    F   F+    ++G+ K  S H +R   A     AG   + L    G 
Sbjct: 258 PTKESGMPLELRSFESNFRRYVMRSGIQKEISPHALRNNFAKRCILAGMDIYTLSRILGH 317

Query: 314 KTVDQAET 321
            +V   E 
Sbjct: 318 SSVTVTEK 325


>gi|189424492|ref|YP_001951669.1| integrase [Geobacter lovleyi SZ]
 gi|189420751|gb|ACD95149.1| integrase family protein [Geobacter lovleyi SZ]
          Length = 421

 Score = 91.6 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 53/368 (14%), Positives = 108/368 (29%), Gaps = 63/368 (17%)

Query: 24  YFRKGHGRRIRLPYPHESTFIPA---------YMSALTGSTPKREYINSPRKKPTTLKWL 74
            +R   G++ R+     + + PA           +   G  PK E  +   K   T K  
Sbjct: 57  RYRLPGGKQSRIIIGRHTLYTPAQARDKAEKILRNIKDGINPKVEKQHP--KVSHTFKSF 114

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF---DYRKITT---KHIRSGVESRKH 128
           + +      +   A   R   ++   ++  +  DF      +IT       R+G      
Sbjct: 115 LED-----EYSPWAEAQRKDGKATVKRLKSRFSDFLELPLTEITPLIVDKWRTGRLKDSK 169

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT-EGIRPWTKEDMQQFKSFWS 187
            P++  + LT+++     AV  E++  +P   V+  K  +   +R  + ++ ++      
Sbjct: 170 RPATCNRDLTAIKAFLSKAVEWEHLEHHPLAKVKPLKVDSVAKVRFLSADEEKRLLKALD 229

Query: 188 E--------------------------------GSQPRLAFEFLLYSGLRCSDSCRAGVQ 215
           +                                    +      L +G+R  +       
Sbjct: 230 DREEVARAERATANLWRKERGYPLYTDLNSVSFADHLKPMILVSLNTGIRWGELASLAWD 289

Query: 216 HLQNNIFSIKT----QKTGTIITVELPDGFMKLLA--MTPIGKETFFINNDKQKMNATQF 269
            +      +       K+G    V L    +  L         +  F   D +K      
Sbjct: 290 SVDMKKALVTVIGDKAKSGKTRHVPLNSIALNALKDWKKQSSGDVVFPGRDGKK-TLDNV 348

Query: 270 SIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           +  +KA    A + N   H +R   A+    AG   + +    G   +     Y   A  
Sbjct: 349 NKSWKAVLDAAQIKNFRWHDMRHHFASWLVMAGVDLNTVRELLGHSDLKMTLRYAHLAPE 408

Query: 329 IRLGIKNS 336
            +      
Sbjct: 409 HKAAAVGL 416


>gi|324019883|gb|EGB89102.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 117-3]
          Length = 386

 Score = 91.6 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/211 (17%), Positives = 74/211 (35%), Gaps = 21/211 (9%)

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
            +  + L  +R +   AV   ++   P   +  P+ K   IR  T+E+ ++  +  +   
Sbjct: 144 GTKTRHLAILRAILNMAVEWGWLDRAP--KISTPRVKNGRIRWLTEEESKRLFAEIAPHF 201

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGFMKLLA 246
            P + F     +GLR S+        +  +           K G  I V L +   ++L 
Sbjct: 202 FPVVMFAIT--TGLRRSNVTDLEWSQVDLDKKMAWMHPDETKAGNAIGVPLNETACQILR 259

Query: 247 MTPIGKETFFINNDKQKMNATQFS------------IWFKAKATKAGV-NKSAHGVRKFS 293
                 + +   + K    +                  +K    +AG+ N   H +R   
Sbjct: 260 KQQGLHKRWVFVHTKPAYRSDGTKTAAVRKMRTDSNKAWKGALKRAGISNFRFHDLRHTW 319

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324
           A+    +G +   L    GW+T++  + Y  
Sbjct: 320 ASWLVQSGVSLLALKEMGGWETLEMVQRYAH 350


>gi|294676507|ref|YP_003577122.1| phage integrase [Rhodobacter capsulatus SB 1003]
 gi|294475327|gb|ADE84715.1| phage integrase [Rhodobacter capsulatus SB 1003]
          Length = 409

 Score = 91.6 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 42/258 (16%), Positives = 82/258 (31%), Gaps = 14/258 (5%)

Query: 82  AHWGSLAVN--SRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
             W +  V   +    +    +I         +K T K  R  +   K TP  A +    
Sbjct: 131 PEWKNRKVADITPTDVDRLLTKIAAGRARPSKKKPTQKR-RKKLAPPKPTPVRANRAGEM 189

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA--FE 197
           +R +F  A+  +    NP     R + +    R  + E++++  +  +     R A    
Sbjct: 190 LRKMFNLAMLWKMRTDNPAFGFRR-RPEVARDRFLSFEEIERLANALAVDEDQRAASIIR 248

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ----KTGTIITVELPDGFMKLLA----MTP 249
             + +G R  +   A       ++     Q    K   I  V +    + L+     + P
Sbjct: 249 LCMLTGARLGEVRTATFDQFNLDLAIWTKQAAYTKQRRIHRVPISHEAVALIRLRREIVP 308

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMA 309
            G    F  +   +        W K +      +   H +R   A++    GA+   +  
Sbjct: 309 KGCPFLFPGDVPDQPVGDPKRFWPKMQKVALIPDVRIHDLRHTFASLLVSGGASLEMIGR 368

Query: 310 TYGWKTVDQAETYTKGAD 327
             G   +   + Y    D
Sbjct: 369 LLGHTQIGTTQRYAHLID 386


>gi|291557723|emb|CBL34840.1| Site-specific recombinase XerD [Eubacterium siraeum V10Sc8a]
          Length = 357

 Score = 91.6 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 49/280 (17%), Positives = 97/280 (34%), Gaps = 36/280 (12%)

Query: 105 KSGDFDYRKITTKHIRSGVE-------SRKHTPSSAIQFLTSMRVLFKWAVRQE-YVAIN 156
           K  D D + I    +   +E        R +   +  +   S+R  +K+    + + A +
Sbjct: 67  KISDLDDKYIKAVTLTDAMEFLSFTVSERSNQAKARSRKAVSLRQFYKFLTNNKAWFAAS 126

Query: 157 PCLSVERPKRKTEGIRPWTKEDMQQFKSF-WSEGS-----QPRLAFEFLLYSGLRCSDSC 210
           P L++E P  K    +  T ++  Q     + E S     +        L  G+R S+  
Sbjct: 127 PMLNLELPSPKNALPKHLTLQECGQLLHEGFKEFSSWMDYRDYAMIIMFLNCGMRLSELV 186

Query: 211 RAGVQHLQNNI---------FSIKT-QKTGTIITVELPDGFMKLL--------AMTPIGK 252
              V     NI          S+K   K      V L +  +  +        ++    +
Sbjct: 187 GITVNDFVENIDPSQPCVKYLSVKVLGKGNKERIVYLNEQCVDAVTKYTEARKSVADPKE 246

Query: 253 ETFFINNDKQKMNATQFSIWFKAK---ATKAGVNKSAHGVRKFSATISADAGATAHELMA 309
           +  FI+    ++   +       +      AG   S H +R  +AT+    G     L  
Sbjct: 247 KALFISKRGNRITNRRVEQIIDDRLKACGLAGKGISVHKLRHTAATLMYQNGVDVRVLKE 306

Query: 310 TYGWKTVDQAETYTKGAD-RIRLGIKNSRRISSVVDSDDP 348
             G + ++  + YT   + ++R  I ++  +    D  +P
Sbjct: 307 VLGHENLNTTQIYTHVVNTQLRDAINSNPVMDIKNDLPEP 346


>gi|258650892|ref|YP_003200048.1| integrase [Nakamurella multipartita DSM 44233]
 gi|258554117|gb|ACV77059.1| integrase family protein [Nakamurella multipartita DSM 44233]
          Length = 406

 Score = 91.6 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 52/323 (16%), Positives = 105/323 (32%), Gaps = 57/323 (17%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFE-SYFDQIIRKSGDFDYRKITTKHIRSG---VES 125
           T+   +  + ++    +L   S  +++ +    +I + G     ++  +H+      + +
Sbjct: 71  TVAAWLDHWLENIARPNLRATSYSAYQVAVRRHLIPEIGKHRLDRLEPEHLERLYRKIVA 130

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
               P  A Q   ++R     A R+ +VA N       P+ + E I+P+T ++++   S 
Sbjct: 131 DGGRPGRAHQVHRTIRTALGEAHRRGHVARNVAALARPPRVQLEPIQPYTVDEVRAIMST 190

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-------------- 231
                     +   L  GLR  +        +  +   ++ + T                
Sbjct: 191 ARAH-PNGARWAIALALGLRQGEVLGLTWSDVDLDAGFLRIRTTRHRPTYAHGCGGTCGK 249

Query: 232 -----------------------IITVELPDGFMKLLAMTPIGKETF------------- 255
                                     V LP    +LL    + +E +             
Sbjct: 250 SAGRCPQRIQMNRAAGDTKSDAGRRVVGLPAALGELLREQRVEQERWQEAARQLWQNGDW 309

Query: 256 -FINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGW 313
            F +     +N +     +KA   +AGV +   H  R  +AT+    G     +M   GW
Sbjct: 310 VFTSRVGAPLNPSSDYHRWKALLKEAGVRDGRLHDARHTAATVLLVLGVPERTVMGIMGW 369

Query: 314 KTVDQAETYTKGADRIRLGIKNS 336
            +   A  Y    D IR  + + 
Sbjct: 370 SSTAMAARYQHVTDPIRRQVADQ 392


>gi|323139403|ref|ZP_08074453.1| integrase family protein [Methylocystis sp. ATCC 49242]
 gi|322395335|gb|EFX97886.1| integrase family protein [Methylocystis sp. ATCC 49242]
          Length = 394

 Score = 91.6 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/303 (12%), Positives = 104/303 (34%), Gaps = 21/303 (6%)

Query: 48  MSALTGSTPKREYINSPRKKPTT--LKWLISEYRKSAHWGSLAVN-SRISFESYFDQIIR 104
           ++   G    +    + + +  +  ++ L+ ++       + + + +         +++ 
Sbjct: 80  LAEREGGRDPQAERQAKKLEVMSQRVEDLVDDFINRHVSQNRSASETIRILRR---EVLP 136

Query: 105 KSGDFDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162
             G     ++    +   + + +    P  A +   ++R    W V +  +  +PC  + 
Sbjct: 137 DFGTRAVSELCRADVDRLIHNIQARGAPIMANRAFAAIRKFLAWCVGRGILENSPCEGMR 196

Query: 163 RPKRKTEGIRPWTKEDMQQFK-SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221
            P ++    R  + E+++    +  + G       + L  +G R ++        L  + 
Sbjct: 197 APSKERSRERVLSDEELKSILVAARTMGHPFGSIVQVLGLTGQRRNEVGLMTWAQLDLSN 256

Query: 222 FSI----KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKA 277
                  +  K G    V L +    L++ +P   +  F N+ K+      +S       
Sbjct: 257 GQWVIPAERAKNGKSHVVHLSEEAKALISSSPRLGDLVFSNDGKRPF--QGYSKCKSRLD 314

Query: 278 TKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ---AETYTKGA--DRIRL 331
             +G+ N + H +R+   +  A  G   H        ++      A  Y +    D  R 
Sbjct: 315 QVSGINNWTLHDLRRTVVSGMARLGIPPHVADKILNHQSGSIGGVAAIYQRHEFLDERRD 374

Query: 332 GIK 334
            ++
Sbjct: 375 ALE 377


>gi|306843458|ref|ZP_07476059.1| tyrosine recombinase XerD [Brucella sp. BO1]
 gi|306276149|gb|EFM57849.1| tyrosine recombinase XerD [Brucella sp. BO1]
          Length = 307

 Score = 91.6 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/272 (15%), Positives = 94/272 (34%), Gaps = 32/272 (11%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHT---PSSAIQFLTS 139
              A N+  S+    +    +      +  +  T HIR  +++       P+S  + L++
Sbjct: 18  RGAAQNTLESYRRDLEAAAEELAAKGVNLAEAETGHIRMTLDTMAAQGFAPTSQARRLSA 77

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS------------ 187
           +R  F++   + +   +P   ++ PK++    +  + E++ +     +            
Sbjct: 78  LRQFFRFLYSEGFRQDDPTGILDAPKKQKPLPKIMSVENVGKLLDRAALEADEAAEPGER 137

Query: 188 -EGSQPRLAFEFLLYSGLRCSDSCRAGVQ-HLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
            +  +     E L  +GLR S+     V     ++ F +   K      V L     + L
Sbjct: 138 IKALRLHALLETLYATGLRVSELVGLPVTVARTDHRFLLVRGKGSKDRMVPLSRKAREAL 197

Query: 246 AM-------TPIGKETFFIN---NDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKF 292
                     P   +  ++    ++   +    F+   K  A +AG+     S H +R  
Sbjct: 198 QKFLTLRDSLPGSDDNPWLFPAFSESGHLARQVFARELKGLAARAGLAASSVSPHVLRHA 257

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324
            A+     GA    +    G   +   + YT 
Sbjct: 258 FASHLLQNGADLRTVQQLLGHADISTTQIYTH 289


>gi|247663502|gb|ACT09076.1| IntI1 [Vibrio cholerae]
          Length = 313

 Score = 91.6 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/305 (14%), Positives = 93/305 (30%), Gaps = 62/305 (20%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129
           ++ + R+   +   ++ +  ++  +    IR  G      + +  + + +      RK +
Sbjct: 16  VLDQLRERIRYLHYSLPTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75

Query: 130 PSSAIQFLTSMRVLFK--WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            S+  Q L +M   +         ++       + RP+         T +++ +   F  
Sbjct: 76  VSTHRQALAAMLFFYGKVLCTDLPWLQ-----EIGRPRPSRRLPVVLTPDEVVRILGFL- 129

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQH--LQNNIFSIKTQKTGTIITVELPDGFMKLL 245
           EG   RL  + L  +G+R S+  +  V+     +    ++  K      + LP+     L
Sbjct: 130 EGEH-RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSL 188

Query: 246 AMTPIGKETFFINN---------------------------------------------D 260
                    +++ +                                              
Sbjct: 189 REQLSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVR 248

Query: 261 KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           +  M    F   FK    +AG+ K  + H +R   AT    +G     +    G   V  
Sbjct: 249 RHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVST 308

Query: 319 AETYT 323
              YT
Sbjct: 309 TMIYT 313


>gi|258512500|ref|YP_003185934.1| integrase family protein [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257479226|gb|ACV59545.1| integrase family protein [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 350

 Score = 91.6 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 51/336 (15%), Positives = 105/336 (31%), Gaps = 32/336 (9%)

Query: 45  PAYMSALTGSTPKREYINSPRKKPTTLKWL--ISEYRKSAHWGSLAVNSRISFESYFDQI 102
            A + A     P      + RK+   + WL  +  +  +A        S  +        
Sbjct: 7   KARVRADATRQPVPIDSPTSRKEQIRMSWLAAVDWFLANARRAGHKPGSIETRRQRIQAF 66

Query: 103 IR--KSGDFDYRKITTKHIRSGVES---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINP 157
                  +     +T   I++ V+       +  +    L  ++  +   V +     NP
Sbjct: 67  ADWCAVRNLPPGYVTPDDIQNFVDHCLNINLSVFTINGRLRVLKTFYSEGVAEGIFLSNP 126

Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAG 213
              V R +  T  + P +++ +Q+  + + +      +       +L +GLR  ++  A 
Sbjct: 127 ADGVRRLREPTNAVLPVSEDHVQKLLAVFDKRQWVEFRDLAITVLVLDTGLRIREALLAK 186

Query: 214 VQHLQ--NNIFSIKT--QKTGTIITVEL----PDGFMKLLAMTPIGKETFF------INN 259
           V+ L        +     K G   TV       +   + L    +G +  F      ++ 
Sbjct: 187 VEDLDLREGALWVPPVHAKGGKGRTVYFGQATRELLSEWLRKRGVGSDLLFPSVYLDVSG 246

Query: 260 DKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATI-SADAGATAHELMATYGWKTVD 317
               ++   +       A +AGV     H +R   A      +G     L    G  +  
Sbjct: 247 AYHPLSRHAYWKRLAQYAERAGVPHIHPHQLRHTFAIQFLVRSGGDLVTLARQMGHSSTR 306

Query: 318 QAETYTKGAD---RIRLGIKNS--RRISSVVDSDDP 348
             E Y   A+   +  L  ++S    +        P
Sbjct: 307 TTERYLAVAETKAQKILTQQHSPIDHLGGAPGKRRP 342


>gi|119715959|ref|YP_922924.1| phage integrase family protein [Nocardioides sp. JS614]
 gi|119536620|gb|ABL81237.1| phage integrase family protein [Nocardioides sp. JS614]
          Length = 378

 Score = 91.6 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 55/335 (16%), Positives = 112/335 (33%), Gaps = 46/335 (13%)

Query: 18  HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISE 77
           +G+    +R   GR       H   F+    +           +      P   + L+S 
Sbjct: 10  NGRWRARYRDDTGRE------HARHFVRKVDAQAWLDEQTARMVRGEWADPRAGRELLSA 63

Query: 78  YRKSAHWGSL---AVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRS---GVESRKHTP 130
           Y     W S+   +  +    ++     I+ + G      I    +++    +ESR+  P
Sbjct: 64  YAT--RWQSVQVSSPGTARIVDNALRLHILPRLGSERVANIRRSDVQAFVKWLESRELRP 121

Query: 131 S------------SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
           +            S       +  +   AV    +A++PC  +  PK   + +   T ++
Sbjct: 122 ATESQPARTLSAGSVRNIYEVLARVMDAAVEDRVIAVSPCRRIALPKGHDDEVEVPTLDE 181

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK---------- 228
           + + +   +E  Q       L  SGLR  +     +  +     SI+ ++          
Sbjct: 182 IDRVRDALAERWQVLPV--VLAGSGLRVGELLGLRLSDVDFLRRSIRVERQRLQTNQIAP 239

Query: 229 ---TGTIITVELP----DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281
                +   V +     D     LA  P  +E  F +   + +   ++       A  AG
Sbjct: 240 LKSKASRRRVPVGQVVIDALAAHLASYPPTEEALFTDEFGKPLTYRRWKRLVSDAAKVAG 299

Query: 282 VNKSAHGVRKFSATISADAGATAHELMATYGWKTV 316
              ++H  R F+A+     GA+  ++ A  G  + 
Sbjct: 300 AEITSHSFRHFAASALISGGASVKQVQAFLGHASA 334


>gi|253570203|ref|ZP_04847612.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251840584|gb|EES68666.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 408

 Score = 91.6 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 48/293 (16%), Positives = 97/293 (33%), Gaps = 35/293 (11%)

Query: 48  MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFES---YFDQIIR 104
                G   +       R+  +T     S YR+S ++     +  +S       F++I  
Sbjct: 106 HLLRMGEIERERLRIRSREINST-----STYRQSQYFQKYLTDYLVSLGKKDIAFEEITE 160

Query: 105 KSGDFDYRKITTKHIRSGVESRKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163
             G         ++ ++ +   K+ + S   + L  +  L   AV  E +  NP  +VE 
Sbjct: 161 DFG---------RNYKAFLIRNKNFSTSQTNRCLCWLNRLLYLAVDNEILRTNPVENVEY 211

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHL--- 217
            K+     +  T+E+M++  +      +    R AF F  ++GL  +D  +    H+   
Sbjct: 212 EKKTAPKHKYVTREEMKRILAMPLNEGRAELGRRAFIFSYFTGLAYADIKQLHPCHIGTT 271

Query: 218 --QNNIFSIKTQKTGTIITVELPDGFMKLLAM--TPIGKETFFINNDKQKMNATQFSIWF 273
                   I  +KTG    + L     ++L++  T       F        +        
Sbjct: 272 AEGRRFIRINRKKTGVEAFIPLHPIAEQILSLYNTTDIHSPVFPL-----PSRDSIWHEI 326

Query: 274 KAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +      G   + S H  R     +      +   +    G   +   + Y +
Sbjct: 327 REIGVILGRHDDLSYHQARHGFGVLLISESVSIESIAKMMGHSNISTTQGYAR 379


>gi|189426539|ref|YP_001953716.1| integrase [Geobacter lovleyi SZ]
 gi|189422798|gb|ACD97196.1| integrase family protein [Geobacter lovleyi SZ]
          Length = 409

 Score = 91.6 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 49/275 (17%), Positives = 93/275 (33%), Gaps = 25/275 (9%)

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121
             P+    T+  L  +Y  +    +LA  +   + ++ +   +         IT   +  
Sbjct: 92  RQPKLVTITVADLHRQYMSTK--KTLAPATIRQYAAWMENHFKDWLTLPADTITGSMVLE 149

Query: 122 GVESRKHT--PSSAIQFLTSMRVLFKW--AVRQEYVAINPCLSVERPK-----RKTEGIR 172
            +E  + T   S AI  +  +R LF++  A+    +  NP   V   +     +K   I 
Sbjct: 150 RLELMEITNGKSQAINAVKLLRSLFRFGLALHPGVIHRNPVDGVREVRERDWAKKKRRIT 209

Query: 173 PWTKEDMQQFKSFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQK 228
               ED+  +    +    P  R     LLY+GLR +++ R     +      F+   +K
Sbjct: 210 FIKPEDLPIWFKAVNAYDNPKGRDYMLLLLYTGLRRNEAARLKWSDIDFKRKAFTFTPEK 269

Query: 229 T------GTIITVELPDGFMKLL---AMTPIGKETFFINNDKQKMNATQFSIWFKAKATK 279
                     +T+ + +   KLL          E  F         +     + +     
Sbjct: 270 KRGEKPEDDQVTMPMSEQLYKLLLKRRAAGYENEYIFPGKHPAPFLSNP-DNYKRDIIAA 328

Query: 280 AGVNKSAHGVRKFSATISADAGATAHELMATYGWK 314
           +GV    H +R+   TI+       + L A     
Sbjct: 329 SGVQFCFHDLRRTFITIAEGLDVPHYSLKALLNHS 363


>gi|330970597|gb|EGH70663.1| prophage PSPPH06, site-specific recombinase phage integrase family
           protein [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 382

 Score = 91.6 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 47/299 (15%), Positives = 100/299 (33%), Gaps = 50/299 (16%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISF-------ESYFDQIIRKSGDFDYRKITTKHIRSG 122
           +L++L  E+ +S  +  L+  ++  +        +Y  ++ +  G+ D +K T   ++  
Sbjct: 76  SLQYLCDEFHRSQQFKELSKKTQDDYCYSREVLVAYPTKLDKPLGELDVKKFTPAMVQRI 135

Query: 123 VESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
           ++      TPS A   L  +R L +W   + +V  NP   +E PK + +   P +   + 
Sbjct: 136 IDKIAEAGTPSKAAHALRYLRRLMQWGRNRGFVTDNPAKGIEAPKERKQRRLPDSTVMVD 195

Query: 181 QFKSFWSEGSQPR-----------LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229
             K    +G   R              E      LR  ++     ++  +       +K 
Sbjct: 196 LIKFAHQQGQLKRGEKGACSPYLWYVMEIGYLCRLRGIETITLTDENELDEGVLTNRRKG 255

Query: 230 GTIITVELPDGFM-KLLAMTPIGKETF----------------FINNDKQKMNATQFSIW 272
                V           A   +  ET+                 ++    +++ +     
Sbjct: 256 SRDNIVRWTPRLRAAWDAAKAVRTETWQRLKKPVPFRADQRFLIVSASGGQLSKSGLDTA 315

Query: 273 FKAKATKAGVNKSA---------HGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           F+    +A ++KS          H  ++   T +A   A   +     G K     + Y
Sbjct: 316 FQRLIVQA-IDKSVLTEAQRFGMHDFKRKGITDTAGTRADKQQ---ASGHKDESMMDVY 370


>gi|324323949|gb|ADY24992.1| integrase family protein [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 296

 Score = 91.6 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/258 (15%), Positives = 95/258 (36%), Gaps = 24/258 (9%)

Query: 102 IIRKSGDFDYRKITTKHIRSGVESR----KHTPSSAIQFLTSMRVLFKWAVRQEYVAINP 157
           + R   +F+   +T++ +   V       K  P++  + + +++V + + V+  Y  +NP
Sbjct: 36  VERTGENFNPDFLTSRDLHEWVSFMQTVEKLAPATINKRVAAIKVYWSYLVQAGYSILNP 95

Query: 158 CLSVERPKRKT--EGIRPWTKEDMQQF-------KSFWSEGSQPRLAFEFLLYSGLRCSD 208
            + V+R +     +  R  ++ +  +F       K  W + ++     + +L +GLR S+
Sbjct: 96  TIKVKRKRISPLAQAPRWLSRLEQDKFLHQIHKEKHVWKK-TRNLAIVQIMLQAGLRISE 154

Query: 209 SCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLL------AMTPIGKETFFINND 260
                ++ +       ++ + K G      +    MK +               F     
Sbjct: 155 VVSLDIEDIDLKRRTITVISGKGGKNRIALMNLELMKTVENWLGVRGELSQVALFLSARH 214

Query: 261 KQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
             ++         K      G+ + SAH +R        DA      +    G ++++  
Sbjct: 215 STRITRQGIHYLIKNYLHSIGLTDYSAHSLRHSFCRNLVDANQPLQIIAQLAGHESLETT 274

Query: 320 ETY-TKGADRIRLGIKNS 336
             Y T   + +R  +++ 
Sbjct: 275 RRYITPSENDLRRAVESI 292


>gi|211731863|gb|ACJ10160.1| integrase [Bacteriophage APSE-3]
 gi|211906277|gb|ACJ11656.1| putative phage-associated helicase [Candidatus Hamiltonella
           defensa]
          Length = 357

 Score = 91.6 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 47/293 (16%), Positives = 101/293 (34%), Gaps = 34/293 (11%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE-----SRKHTPSSAIQFLTS 139
             L   +     S   ++  +     ++       R G+E     +++ + ++  + L  
Sbjct: 60  TRLKDITEAKIYSAISKMKNRQEQLRWKSRVNSAKRKGIEIPAYQAKEVSIATKAKHLAL 119

Query: 140 MRVLFKWA-VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEF 198
           ++ + + A    +++  +P   ++ P  + + IR    ++ ++  +   E    R   EF
Sbjct: 120 LKSMMRSAERDWKWIEKSPV--IKVPSAREKRIRWLEPDEAERLINECPEPL--RSTVEF 175

Query: 199 LLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254
            L +GLR S+        +           +  K+G  I V L D    +L       + 
Sbjct: 176 ALATGLRRSNILNLAWSQIDMQRKVAWIEPENSKSGKAIGVALNDTACCILTRQLGNHQK 235

Query: 255 FFI-------------NNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADA 300
           +                N  +KM     + W +A   +AG+ N   H +R   A+    +
Sbjct: 236 WVFVHTMSAKRSDGSQTNSIRKMRVDSNTAW-RAALKRAGIENFRFHDLRHTWASWLIQS 294

Query: 301 GATAHELMATYGWKTVDQAETYTKGADR-----IRLGIKNSRRISSVVDSDDP 348
           G     L    GW++V+    Y   A        +       R +  + +  P
Sbjct: 295 GVPLSVLQEMGGWESVEMVRRYAHLASNHLTEHAKQIDGVFDRFNRKISNHVP 347


>gi|57234334|ref|YP_181609.1| phage integrase family site specific recombinase [Dehalococcoides
           ethenogenes 195]
 gi|57224782|gb|AAW39839.1| site-specific recombinase, phage integrase family [Dehalococcoides
           ethenogenes 195]
          Length = 435

 Score = 91.6 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 48/297 (16%), Positives = 101/297 (34%), Gaps = 47/297 (15%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
           L+    +Y K         +    +++    I    G     ++T + I++    +    
Sbjct: 70  LENWCRDYVKIQTTQRTFESY---YQNIIGHIEPALGKVILTELTPQIIQAYYARQLEKG 126

Query: 131 SS-------AIQFLTSMRVL---FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
            +       A   L   R++    K A +   +  NP  +VE P+ +   I    K+++ 
Sbjct: 127 RADGKGGLSARSVLYQHRIISKCLKQATKLGLIMRNPADAVEPPRPRKTAISVPDKDELP 186

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----------------NNIFSI 224
           +    + E +   + +  LLY G+R  ++     + +                 +  + I
Sbjct: 187 RLLDAF-ETTPYYVFYCLLLYCGMRRGEALALRWKDIDLKQDTIQIAETAFTLRSGEYVI 245

Query: 225 KTQKTG-TIITVELPDGFMKLLAMTPIG--------------KETFFINNDKQKMNATQF 269
           K  KT  +   +++P     LL                     +  F   + + +N    
Sbjct: 246 KEPKTPHSRRCIDIPPTMKLLLLEYKADQTAYYAKLGVELGLHDFVFTRPNGEPLNPNTV 305

Query: 270 SIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
           +  F     KAG +K   H +R   AT+   AG     +    G  +++   +TY+ 
Sbjct: 306 THTFLKAVRKAGFDKLRLHDLRHLHATLMLQAGIHPKIVSERLGHASINITLDTYSH 362


>gi|295401430|ref|ZP_06811400.1| integrase family protein [Geobacillus thermoglucosidasius C56-YS93]
 gi|294976480|gb|EFG52088.1| integrase family protein [Geobacillus thermoglucosidasius C56-YS93]
          Length = 304

 Score = 91.6 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/290 (14%), Positives = 87/290 (30%), Gaps = 39/290 (13%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----KHT 129
           +++EY         + N+ IS+ +  +             +T   IR  ++      +  
Sbjct: 1   MLNEYVVYLQEKGASQNTIISYTNDLNMFFHDLHIHPDDYVTPADIRKWIQHMLNPAEGK 60

Query: 130 P---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP---WTKEDMQQFK 183
           P   S+  + L S+R  + WAV + Y+  NP   ++  K   E        T+E+ +   
Sbjct: 61  PLAISTINRRLNSLRSFYAWAVERHYIEQNPMKDIQDLKTADEDYEKIMWLTEEEFEDLL 120

Query: 184 SF-------------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
                            +  + R     L Y+GLR  +     +  L   +  I+    G
Sbjct: 121 QRMRKKPVRSRGVDPEEKYRRDRAVVYLLTYAGLRVEELSNLKLTDLDLEMKRIRIVGKG 180

Query: 231 TII-TVELPDGF-----------MKLLAMTP--IGKETFFINNDKQKMNATQFSIWFKAK 276
             + TV + +              ++    P        F +    K +        ++ 
Sbjct: 181 MKVRTVPISNILLAELEDWLKFRAEMAKKKPHVAVSPYVFYSQRSPKFSVRGIQRMIESY 240

Query: 277 ATKAGVNKSAHGVRKFSATISADA-GATAHELMATYGWKTVDQAETYTKG 325
           +       + H  R         A      ++    G   +     Y K 
Sbjct: 241 SLP-NKKLTPHMFRHTFCKWMLKATNNDIEKVRRLAGHSNIATTSRYLKD 289


>gi|191639820|ref|YP_001988986.1| Phage integrase [Lactobacillus casei BL23]
 gi|190714122|emb|CAQ68128.1| Phage integrase [Lactobacillus casei BL23]
 gi|327383931|gb|AEA55407.1| Phage integrase [Lactobacillus casei LC2W]
 gi|327387112|gb|AEA58586.1| Phage integrase [Lactobacillus casei BD-II]
          Length = 289

 Score = 91.6 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 46/261 (17%), Positives = 78/261 (29%), Gaps = 41/261 (15%)

Query: 100 DQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158
           + I+   G      ITTK ++  V+     T ++  ++   +  +  +AVRQ Y+  NP 
Sbjct: 4   NHILPAFGGKRIATITTKDVQKAVKRWFEFTSANYKRWYNYVSSVMDYAVRQGYMDKNPA 63

Query: 159 LSVERPKRKT-EGIRP---WTKEDMQQFKSFWSEGSQ--PRLAFEFLLYSGLRCSDSCRA 212
            +V  P      G +P   WTKE M  F +   + +     + F  L ++G+R  +    
Sbjct: 64  KAVVLPHHDDLAGDKPENFWTKEQMNHFFACIDQANHFDIFIMFRVLAFTGVRRGELLAL 123

Query: 213 GVQHLQNNIFSIKTQKT----GTIITVELPDGFMKLLAMTPIGKET-------------- 254
               +     SIK  KT         +             P+  +T              
Sbjct: 124 TWNDVSFKENSIKVNKTLTQGDKGHQIVQAPKTRAGRRTIPVDGQTMAYLKRWRRIQQET 183

Query: 255 --------------FFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISA 298
                          F N      +    S          G+    + HG R    +   
Sbjct: 184 FIQLGINTMQPNQLLFTNTKNGYQSLNTPSKRLHKLQDDNGLTPRITIHGFRHSFISNLL 243

Query: 299 DAGATAHELMATYGWKTVDQA 319
            AG     +    G       
Sbjct: 244 IAGVPVTSVQKLVGHTDPTIT 264


>gi|163853185|ref|YP_001641228.1| integrase family protein [Methylobacterium extorquens PA1]
 gi|163664790|gb|ABY32157.1| integrase family protein [Methylobacterium extorquens PA1]
          Length = 334

 Score = 91.6 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 87/302 (28%), Gaps = 23/302 (7%)

Query: 38  PHESTFIPAYMSALTGSTPKREYINSPRKKPT------TLKWLISEYRKSAHWGSL-AVN 90
           P   +F     + L     +R    +            T+  L++ Y          A  
Sbjct: 22  PISKSFTSKADALLWARETERSIDRAELPTTIKDLQQITVADLLARYEAEVTAKKRGADR 81

Query: 91  SRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQ 150
            R          +          +     R   +  K    + ++   ++        R+
Sbjct: 82  ERYKLRVIRSHPLASLSLAKLTAVAVSRYRD--DRLKVVQGATVRRELAILQHCFEVARK 139

Query: 151 EY---VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW--SEGSQPRLAFEFLLYSGLR 205
           E+   +  NP   +  P       +    E  Q+  +    +     R   E  + +G+R
Sbjct: 140 EWGTPLPTNPVHGITLPDPSRARDQRLEPEAGQKLHAAIGSAHAWYLRPLMELAIETGMR 199

Query: 206 CSDSCRAGVQHLQNN--IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK 263
             +       H+  +     +   K G   TV L    +++L   P              
Sbjct: 200 RGELLSLQWCHVSLDKRTAHLPITKNGHARTVALTPRAIEILKALPQTDGRVL------P 253

Query: 264 MNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           ++     + ++    +AG+     H +R  + +   +AG +  E+    G +       Y
Sbjct: 254 VSGNAVRLAWERLRKRAGLPSLRFHDLRHEAVSRFFEAGLSIPEVALMSGHRDTRMLMRY 313

Query: 323 TK 324
           T 
Sbjct: 314 TH 315


>gi|330998378|ref|ZP_08322202.1| site-specific recombinase, phage integrase family [Paraprevotella
           xylaniphila YIT 11841]
 gi|329568484|gb|EGG50289.1| site-specific recombinase, phage integrase family [Paraprevotella
           xylaniphila YIT 11841]
          Length = 394

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 40/216 (18%), Positives = 76/216 (35%), Gaps = 12/216 (5%)

Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
            +      + + +SA  + ++ R   K   R   +  N    +E+ + +       + E+
Sbjct: 168 AKQLRRDGQISRNSASGYWSTFRGFLKILYRNRMIKTNVNDFLEKIEPEDVAKEYLSVEE 227

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-----QNNIFSIKTQKTGTII 233
           +        +    + A  F   + LR SD      + +             TQKT T  
Sbjct: 228 LYCLAETPCKIPVLKTASLFSCLTSLRLSDILSLCWEEIVDFAAGGKCVHTITQKTKTED 287

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRK 291
            + + D  ++L+  +P  K   F    K+           K     AG+ K  + H  R+
Sbjct: 288 IIPISDEALELIGYSPEKKGLVF-KGLKRSWTQQP----MKEWIRSAGITKNITFHSYRR 342

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
             AT+ A AG     + +    K++   + Y K  D
Sbjct: 343 TYATLQAAAGTDIRTIQSNMAHKSITTTQRYMKVVD 378


>gi|148544647|ref|YP_001272017.1| phage integrase family protein [Lactobacillus reuteri DSM 20016]
 gi|184154000|ref|YP_001842341.1| integrase [Lactobacillus reuteri JCM 1112]
 gi|227365077|ref|ZP_03849107.1| phage integrase/recombinase [Lactobacillus reuteri MM2-3]
 gi|325682980|ref|ZP_08162496.1| phage integrase family integrase/recombinase [Lactobacillus reuteri
           MM4-1A]
 gi|148531681|gb|ABQ83680.1| phage integrase family protein [Lactobacillus reuteri DSM 20016]
 gi|183225344|dbj|BAG25861.1| integrase [Lactobacillus reuteri JCM 1112]
 gi|227069885|gb|EEI08278.1| phage integrase/recombinase [Lactobacillus reuteri MM2-3]
 gi|324977330|gb|EGC14281.1| phage integrase family integrase/recombinase [Lactobacillus reuteri
           MM4-1A]
          Length = 322

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/291 (14%), Positives = 106/291 (36%), Gaps = 15/291 (5%)

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121
             P+K+  + K  ++++ ++      +  +   +    +Q+++K      R+ITT+ +R 
Sbjct: 35  REPQKRKISNKEYLAKFLEAKKMEGCSDRTIKYYRVTVEQLLKKV-VRPVRRITTEEMRE 93

Query: 122 GVESRKH----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
            +   +       ++      ++   F W   ++Y+  +P   + + + +       T E
Sbjct: 94  YLVDYQKINNCGKTTIDNIRRNISSFFSWLEEEDYILKSPMRRIHKIRAEKLVKNVITDE 153

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVE 236
           D+++ +   S   +     + L  +G+R  +  R     +  +    +   K      V 
Sbjct: 154 DIEKLRDGCSC-LRDVAIIDLLYSTGIRVGELVRLNRTDINFSERECVVFGKGDKERRVY 212

Query: 237 LPDG----FMKLLAMTPIGKETFFINNDKQ--KMNATQFSIWFKAKATKAGVNK-SAHGV 289
                    +  L          F++ DK   ++  +   I  +    K  +++   H  
Sbjct: 213 FDAKSKVHLINYLRSRNDDNPALFVSLDKPNDRLKISGVEIRLRQLGRKLHLDRIHPHKF 272

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
           R+  AT + D G    ++    G   +D    Y    ++  +   + + IS
Sbjct: 273 RRSMATRAIDKGMPIEQVQKILGHSQIDTTMQYA-IVNQNNVKAAHRKYIS 322


>gi|301301431|ref|ZP_07207569.1| site-specific recombinase, phage integrase family [Lactobacillus
           salivarius ACS-116-V-Col5a]
 gi|300850983|gb|EFK78729.1| site-specific recombinase, phage integrase family [Lactobacillus
           salivarius ACS-116-V-Col5a]
          Length = 249

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 85/226 (37%), Gaps = 28/226 (12%)

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT--EGIRPWTKEDMQQFK 183
            K  P + +      + + ++AV  + ++ NP  +V +P++K        ++KE+++ F 
Sbjct: 6   LKTNPGNYVILSVYTKKILQYAVTLKLISENPMNNVIKPRKKKTYGSDNYYSKEELKTFL 65

Query: 184 SFWS-EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----------------NNIFSIKT 226
           ++   E     + F  L YSG+R  +     V  +                 ++ F +  
Sbjct: 66  AYSKKEEFHVYVLFRLLAYSGMRIGELLALKVADIDFNTSQISITKTISSDADSRFELHK 125

Query: 227 QKT--GTIITVELPDGFMKLLAMTPIGK--ETFFINNDK--QKMNATQFSIWFKAKATKA 280
            KT  G  I + +    + L++     K  + F        +  +    ++W      KA
Sbjct: 126 PKTTTGNRI-ISVDPDTINLVSTLTKDKKKDDFIFRFYGCSKPYSPRTVALWKNKIIKKA 184

Query: 281 GV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
            +   S HG R    ++  ++G    E+    G   V+     YT 
Sbjct: 185 NLREISLHGFRHTYTSLLFESGVNIKEIQRQLGHSKVEMTLNVYTH 230


>gi|262381576|ref|ZP_06074714.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_33B]
 gi|262296753|gb|EEY84683.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_33B]
          Length = 406

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 45/275 (16%), Positives = 96/275 (34%), Gaps = 26/275 (9%)

Query: 90  NSRISFE---SYFDQIIRK---SGDFDYRKITTKHIRSGVESRKH----TPSSAIQFLTS 139
            +   +E    Y ++ I+K     D     +    I       K       +SAI  L +
Sbjct: 132 KTVQRYETTTRYLEEFIKKEYQLSDIALNNLEANFISKFDAFLKIEKGCAQNSAITRLKN 191

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLAF 196
           ++ + + A+  +++  +P  +  R K +       T ++++   +         Q R  F
Sbjct: 192 LKKIIRTALENDWIKKDP-FAYYRFKLEETDPEFLTMDEIKIILAKEFTIKRVEQVRDVF 250

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251
            F +++GL  SD      +HL  +           QKT  +  + +      +L      
Sbjct: 251 IFCVFTGLAFSDVKDLSPEHLVRDNKGELWIRKNRQKTKIMCNIPVLPVAASILEKYKNV 310

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATIS-ADAGATAHELM 308
            E          ++  + + + K  A   G+ K+   H  R   AT      G +   + 
Sbjct: 311 AE--CTGKLLPVLSNQRMNSYLKEIADVCGLQKNLCTHSARHSYATSICLANGVSMENVA 368

Query: 309 ATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343
              G       + Y +  D+     K+ ++++S +
Sbjct: 369 KMLGHADTSVTKHYARVLDQN--IFKDMQKVNSCL 401


>gi|218263823|ref|ZP_03477799.1| hypothetical protein PRABACTJOHN_03489 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222496|gb|EEC95146.1| hypothetical protein PRABACTJOHN_03489 [Parabacteroides johnsonii
           DSM 18315]
          Length = 333

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 43/242 (17%), Positives = 88/242 (36%), Gaps = 19/242 (7%)

Query: 101 QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
           ++  K  D+  +     H  + +       +SA  + ++ R L K A +++ +  N    
Sbjct: 99  ELCEKFRDYLLKCKQINHPNAYISR-----NSAAGYYSTFRALLKIAYKEKMLRENLNDF 153

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220
           +E+ + K       T +++++  +   +    + A  F   +GLR SD  +   +  +  
Sbjct: 154 LEKIEWKEVKKEYLTLDEVKKLAATPCKIPVLKQASLFACMTGLRISDILKLDWRDFEVG 213

Query: 221 -----IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKA 275
                   I T+KT T  T+ +    ++L      GK   F     + +  +      K 
Sbjct: 214 PDQGYYIRICTEKTETEATLPISQEALELCGEGGTGK--VF-----KGLTRSMTHHPLKQ 266

Query: 276 KATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
              +AG+ K  + H  R   A I    G   + +      K V   + Y    +  +   
Sbjct: 267 WIAEAGIRKHITFHCFRHSYAVIQISLGTDIYTVSKMLTHKNVTTTQIYADLVNSKKRET 326

Query: 334 KN 335
            N
Sbjct: 327 AN 328


>gi|114764561|ref|ZP_01443765.1| probable site-specific integrase/recombinase [Pelagibaca
           bermudensis HTCC2601]
 gi|114542937|gb|EAU45957.1| probable site-specific integrase/recombinase [Roseovarius sp.
           HTCC2601]
          Length = 341

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 55/335 (16%), Positives = 103/335 (30%), Gaps = 40/335 (11%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKRE------YINSPRKKP 68
           R R+GK     R               +F     +       + E       I+      
Sbjct: 5   RNRNGKWHAQVRIKG------HASQTKSFTTKRDAERWAKQTEAELQASALRIDIRVLDR 58

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128
            T++ L+  YR+          S    +     + +   D    K+T +      + R  
Sbjct: 59  VTVRDLLERYRREVTATKRGAASES--KRIDGFLRQTWVDRTLSKVTPQVFSRYRDERLR 116

Query: 129 T--PSSAIQFLTSMRVLFKWAVRQEY---VAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
           T  P + I+ L  +R +F+ A R E+   +  NP  +V +PK      R     ++    
Sbjct: 117 TVRPGTVIRDLGLLRSIFEVA-RLEWDVPLQNNPLANVRKPKAPDPRERRLRPGELDLLL 175

Query: 184 SFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELP- 238
           +          R      + +G+R  +        +  +    +I+  K G    + L  
Sbjct: 176 TACQSYRNDWLRAGIVLAIETGMRRGEILSIRWCDVSMDTSTLTIRETKNGHARRIPLTA 235

Query: 239 ---DGFMKLLAMTPIGKETFFINNDKQKMNATQFSI-WFKAKATKAGVNK-----SAHGV 289
              D    +L +        F       ++A  F   W + K   A   K       H +
Sbjct: 236 VAVDVLRDMLEVCDDSSVRIF------PVSANAFRQCWQRCKGKVAEDYKQIESLRFHDL 289

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           R  + +   + G +  E+    G +       YT 
Sbjct: 290 RHEAVSRFFEMGLSVPEVALISGHRDPRMLFRYTH 324


>gi|326390625|ref|ZP_08212180.1| integrase family protein [Thermoanaerobacter ethanolicus JW 200]
 gi|325993303|gb|EGD51740.1| integrase family protein [Thermoanaerobacter ethanolicus JW 200]
          Length = 399

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 63/372 (16%), Positives = 124/372 (33%), Gaps = 74/372 (19%)

Query: 26  RKGHGRRIRLPYPHESTFIPAYM-SALTGSTPKREYINSPR-----------KKPTTLKW 73
           R      +R+   ++      Y    + GS    E     +               TLK 
Sbjct: 11  RGKDKWLVRIFLGYDENGKRKYHNKTIYGSKKDAEKYKIEKLNEINKGIFVEPANITLKE 70

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSG---VESRKHT 129
            + E+ K++  G +   +  S+    +  I    GD+   K+    I+     + ++  +
Sbjct: 71  YLDEWIKTSLKGRVKATTYQSYVKIIELYIKPVLGDYKISKLNPLLIQDMLTNMMNKNLS 130

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
             +     T ++     AV+ + ++ NPC +V+ PK+  + ++  T E  ++F       
Sbjct: 131 ARTIRYTHTILKNALNQAVKWQIISNNPCNNVDLPKQTKQEMKVLTPEQAKKFLEAC-VY 189

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ-------------KTG-TII 233
           ++  + FE LL SG+R  ++     + +   NN   +K               KT  +  
Sbjct: 190 NRWGILFEVLLTSGMRPGEALGLKWEDIDFKNNRIYVKRNLTRTNDGWKLEEPKTPRSRR 249

Query: 234 TVELPDGFMKLLAMTP--------IGKETF------------------------------ 255
           T+ LP   MK L              KET                               
Sbjct: 250 TIPLPKEVMKSLKEHKKNQTEEKLKAKETLNYDKDKDKFKPEEWQEKLKDPKVYIDYGFV 309

Query: 256 FINNDKQKMN-ATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGW 313
           F   +   ++       +FK    +A + +   + +R   AT+   AG     +    G 
Sbjct: 310 FAAQNGSPLDMRKVVERYFKPLLKEANLPDIRLYDLRHTCATLLLAAGENPKVVSERLGH 369

Query: 314 KTVD-QAETYTK 324
             +    +TY+ 
Sbjct: 370 ANITLTLDTYSH 381


>gi|256829123|ref|YP_003157851.1| integrase family protein [Desulfomicrobium baculatum DSM 4028]
 gi|256578299|gb|ACU89435.1| integrase family protein [Desulfomicrobium baculatum DSM 4028]
          Length = 392

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 44/268 (16%), Positives = 91/268 (33%), Gaps = 28/268 (10%)

Query: 97  SYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT----------PSSAIQFLTSMRVLFKW 146
           SY ++++ + G+    +I T  +     +   T            +    L  ++ + +W
Sbjct: 115 SYANRLLPELGEKTPSEIVTLDLERLRRNLAKTKSPRTRKTLSAQTQKHVLALLKRMLRW 174

Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA--FEFLLYSGL 204
           A    ++     L    P    E     T++ +  +     E S    A  F   L +G+
Sbjct: 175 AADMGHIDPPVHLKFRMPTVDNEKTEFMTEDQLSAYLKALDEESNQHCAAFFRIALLTGI 234

Query: 205 RCSDSCRAGVQHLQ--NNIFSIK--TQKTGTIITVELPDGFMKLLA-MTPIGKETFFINN 259
           R +         +   N   +++  T K     T+ L  G +++L  +        +   
Sbjct: 235 RRTALLNVMWSDVDLENGFLTLRGATAKNEKTQTIPLSPGAVEVLKGIVRPNSPYIWPGQ 294

Query: 260 DKQKMNATQFSIWFKAKATKAGVNKSA---HGVRKFSATISADAGATAHELMATYGWKTV 316
           +             +    KAG+       HG+R   A+  A +GA+ +E+        +
Sbjct: 295 NGGA--REDMRRMGRRLRDKAGLPADFRPVHGLRHHFASHLASSGASLYEVGTLLTHGDL 352

Query: 317 DQAETYTKGADRIRLGIKNSRRISSVVD 344
              + Y        L  +  RR +S+ D
Sbjct: 353 SVTKRYAH------LSDQALRRAASLAD 374


>gi|284990383|ref|YP_003408937.1| integrase family protein [Geodermatophilus obscurus DSM 43160]
 gi|284063628|gb|ADB74566.1| integrase family protein [Geodermatophilus obscurus DSM 43160]
          Length = 347

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/255 (14%), Positives = 80/255 (31%), Gaps = 19/255 (7%)

Query: 88  AVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVL 143
           +  +  S+     + +    G+     +    + +           P++A     ++R  
Sbjct: 22  SPETVKSYGDGVRRFLAWADGEGRPAVLDRASVNAFTAELLEGGAEPATARARQLALRRF 81

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFL 199
             W V +     +P L +  PK   + + P T E ++   +  +       +       +
Sbjct: 82  SAWLVEEGEADADPLLGLRAPKLDAKVVEPLTAEQIKALVAACAGRELRDRRNEALVRLM 141

Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIKTQKT----------GTIITVELPDGFMKLLAMTP 249
           + +G R  +    G + +  +  +   ++           G   +  L        +   
Sbjct: 142 IETGARAGEVVALGTEDVDLSNGTATVRRGKGGRGRVVPFGPQTSRALDRYLRARRSHRL 201

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELM 308
            G    ++ +  +  +          +A  AG+     H +R  +A     AG     LM
Sbjct: 202 AGTLALWLGDRGKAFSYDALHKTLGERARAAGIEGFRPHRLRHTAAHRWLAAGGIEGGLM 261

Query: 309 ATYGWKTVDQAETYT 323
           A  GW   D    YT
Sbjct: 262 AVAGWTRPDMLLRYT 276


>gi|166033606|ref|ZP_02236435.1| hypothetical protein DORFOR_03332 [Dorea formicigenerans ATCC
           27755]
 gi|319936262|ref|ZP_08010680.1| integrase [Coprobacillus sp. 29_1]
 gi|325262570|ref|ZP_08129307.1| transposase [Clostridium sp. D5]
 gi|166026791|gb|EDR45548.1| hypothetical protein DORFOR_03332 [Dorea formicigenerans ATCC
           27755]
 gi|319808638|gb|EFW05182.1| integrase [Coprobacillus sp. 29_1]
 gi|324032402|gb|EGB93680.1| transposase [Clostridium sp. D5]
          Length = 397

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 62/377 (16%), Positives = 111/377 (29%), Gaps = 59/377 (15%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
            ++ K     G   Y +          P P E    P+            E       K 
Sbjct: 24  KYLYKYVDAFGNTKYVYAWRLTP--TDPTPKEKREKPSLRELEQQIRRDIEDGIDSTGKK 81

Query: 69  TTLKWLISEY-RKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRSGVESR 126
            T   L   Y +++    ++  +++   E     +   K G      I     +      
Sbjct: 82  MT---LCQLYAKQNLQRANVKKSTQKQREQLMRLLKEDKLGARSIDTIKPSDAKEWALRM 138

Query: 127 KHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPC--LSVERPKRKTEGIRPWTKEDMQQ 181
           K      ++      S++  F  A++ + V  NP      E  +  T+     T+E  Q 
Sbjct: 139 KDKGFSYNTINNHKRSLKASFYIAIQDDCVRKNPFDFKLSEVLENDTKEKVALTEEQEQA 198

Query: 182 FKSFWSEGSQPRLAFE---FLLYSGLRCSDSCRAGVQHLQ----------------NNIF 222
             SF    +     ++    LL +GLR S+ C   V  +                    +
Sbjct: 199 LLSFIKTDNVYHKHYDDVLILLKTGLRISELCGLTVADIDFKNEVVIIDHQLLKSKEQGY 258

Query: 223 SIKTQKTGTIIT-VELPDG----FMKLLAMTPIGKET--------FFINNDKQKMNATQF 269
            I+T KT + I  V L       F +++   P  +           F+N+  +   A  +
Sbjct: 259 YIETPKTKSGIRQVPLSRETIQAFQRVMKKRPKAEPFVIDGQSNFLFVNHKGKPKVAIDY 318

Query: 270 SIWFKAKATKAGVNK--------SAHGVRKFSATISADAGATAHELMATYGWKTVD---- 317
           +  F     K   +         + H +R    T  A       +L    G   +     
Sbjct: 319 NALFVRMVKKYNKHHKDNPLPHITPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISITMN 378

Query: 318 ---QAETYTKGADRIRL 331
               A   T  ++  RL
Sbjct: 379 WYAHASIDTAKSEVQRL 395


>gi|256027818|ref|ZP_05441652.1| hypothetical protein PrD11_07451 [Fusobacterium sp. D11]
 gi|289765771|ref|ZP_06525149.1| predicted protein [Fusobacterium sp. D11]
 gi|289717326|gb|EFD81338.1| predicted protein [Fusobacterium sp. D11]
          Length = 339

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/244 (15%), Positives = 88/244 (36%), Gaps = 8/244 (3%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFK 145
            +   +   +ES +   I K  +  + ++ T  ++      +            + ++++
Sbjct: 87  RVKETTMEHYESAYTAYISKIKNKVFSELKTLELQEFFNEIRTRQIQ-ESVRAVLSLMYQ 145

Query: 146 WAVRQEYVAIN-PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGL 204
           + +R E V  N   L + + K K + I P+ K ++    +  +   +   A   ++Y+G+
Sbjct: 146 YGMRYEIVDKNYATLLILKKKIKVKEIIPFKKAEIDNLFTLDN---RIAKALCVMIYTGM 202

Query: 205 RCSDSCRAGVQHLQNNIFSIKTQKTGTII-TVELPDGFMKLLAMTPIGKETFFIN-NDKQ 262
           R  +        + NN   ++  KT   I  V + +    ++      K+ +     + +
Sbjct: 203 RIDEFLSLTKNDILNNFIYVREAKTEAGIRPVPIHNRIKPIIDFFLAEKKEYLYTWKENK 262

Query: 263 KMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAET 321
           K +   F         + G   + H  R   A++    GA    L    G   V+     
Sbjct: 263 KASYETFRNNMIKLMKELGTPHTPHDTRHTFASMMNKVGANDVALTTMIGHTDVNLTKSI 322

Query: 322 YTKG 325
           YT  
Sbjct: 323 YTHK 326


>gi|247663508|gb|ACT09079.1| IntI1 [Vibrio cholerae]
 gi|247663514|gb|ACT09082.1| IntI1 [Vibrio cholerae]
          Length = 313

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/305 (13%), Positives = 93/305 (30%), Gaps = 62/305 (20%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129
           ++ + R+   +   ++ +  ++  +    IR  G      + +  + + +      RK +
Sbjct: 16  VLDQLRERIRYLHYSLPTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75

Query: 130 PSSAIQFLTSMRVLFK--WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            S+  Q L ++   +         ++       + RP+         T +++ +   F  
Sbjct: 76  VSTHRQALAALLFFYGKVLCTDLPWLQ-----EIGRPRPSRRLPVVLTPDEVVRILGFL- 129

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQH--LQNNIFSIKTQKTGTIITVELPDGFMKLL 245
           EG   RL  + L  +G+R S+  +  V+     +    ++  K      + LP+     L
Sbjct: 130 EGEH-RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSL 188

Query: 246 AMTPIGKETFFINN---------------------------------------------D 260
                    +++ +                                              
Sbjct: 189 REQLSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVR 248

Query: 261 KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           +  M    F   FK    +AG+ K  + H +R   AT    +G     +    G   V  
Sbjct: 249 RHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVST 308

Query: 319 AETYT 323
              YT
Sbjct: 309 TMIYT 313


>gi|255281125|ref|ZP_05345680.1| site-specific recombinase, phage integrase family [Bryantella
           formatexigens DSM 14469]
 gi|255268082|gb|EET61287.1| site-specific recombinase, phage integrase family [Bryantella
           formatexigens DSM 14469]
          Length = 394

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 50/344 (14%), Positives = 108/344 (31%), Gaps = 43/344 (12%)

Query: 15  RTRHGKIIYYFRKGHG---------RRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
             +     YYFR   G         ++ R  +  +     AY   +  S  +     + +
Sbjct: 6   IKKADNGTYYFRANLGKHPVTGKQIQKYRSNFKTKKEAREAYSKLVLASAEEL----TEK 61

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
           K+  + +  I E     +   +  ++  +  S   +        D  KI   H+++    
Sbjct: 62  KETVSFQNFIEEIYLPWYKTQVKDSTYKNRYSTIQKHFAYFYKMDTDKIEPIHVQNWQLK 121

Query: 126 RKHTPS-SAIQFLTSMR-VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
                S + ++ +  M  + F  A+    +  NP   +   K K   +  WT E+ Q+  
Sbjct: 122 LAKNFSPNYVRIVQGMLCIAFDRAIILGLIDKNPARMIGNVKSKKPKVDFWTLEEFQKVI 181

Query: 184 SFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ----------------NNIFS 223
           S   +G        ++F  L  +G+R  ++       +                    + 
Sbjct: 182 SLLYKGDYYEHYLFISFWLLFMTGMRIGEAAALQWDDIDFETGILSINKSLYYKSMTEYH 241

Query: 224 IKTQKTGTII-TVELPDGFMKLLAMTPIGKETFFINND------KQKMNATQFSIWFKAK 276
               KT   I  + + +  +K L      ++    N +          +        +  
Sbjct: 242 FTEPKTQAGIRDIVIDEDTIKELKEWKEVQQKVLTNCNFVMSYSGIPTSKHTLPRALEKL 301

Query: 277 ATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
           A  AGV++   H +R   A++    G     +    G + +   
Sbjct: 302 AELAGVHRIKIHALRHSHASLLISMGENPLIIKDRLGHEKIQTT 345


>gi|145297530|ref|YP_001140371.1| phage integrase family protein [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142850302|gb|ABO88623.1| phage integrase family protein [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 408

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 53/323 (16%), Positives = 112/323 (34%), Gaps = 18/323 (5%)

Query: 24  YFRKGHGRRI---RLPYPH---ESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISE 77
           Y   G  R I   R P             Y   L+     ++ +   +++  TL  L   
Sbjct: 57  YLWHGRKRAIAIGRFPDVDLNTAREIATEYKRLLSQGIDPKQ-LKEDKRQELTLYELFQL 115

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--TPSSAIQ 135
           +    +      + +   + + D +    G     +I  +  ++   S      P++  +
Sbjct: 116 HYL-PYAKHHKRSWQNDEQRFRDHLQPPMGSRLLSEINLEQGQALQTSLMSQCKPATNNR 174

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF--KSFWSEGSQPR 193
             T ++ +  W+VR  Y+  +P + ++      +  R   K ++++    +   E     
Sbjct: 175 ITTLLKAILTWSVRMGYLEQHPLVYLKTLPENNQRTRFLDKAEIRRLFMAADADENRYAG 234

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTGTIITVELPDGFMKLLAMTPI- 250
              + LL +GLR  +   A  +H+        I   K G    + +    M++L  TP+ 
Sbjct: 235 QYVKLLLLTGLRKDELRLAKWEHIDKVHQTLFIPHTKNGKSRILHMNHMAMQVLQDTPVI 294

Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELM 308
               +     K        +  F     +A +      H  R   A +   +G T +++ 
Sbjct: 295 AGNAYLFPGQKPGQPLNNVTKPFNRMLKRAQIEGQVCIHTCRHSVAALIVSSGGTLYDVQ 354

Query: 309 ATYGWKTVDQAETYTK-GADRIR 330
           A  G  +   ++ Y    A R+R
Sbjct: 355 AQLGHSSSQSSQRYAHLHASRLR 377


>gi|330874852|gb|EGH09001.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 149

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 46/132 (34%), Gaps = 5/132 (3%)

Query: 210 CRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK--ETFFINNDKQKMNAT 267
            R GV  +       +    G    V +             GK  +  F +    +M   
Sbjct: 14  LRQGVLRVMGKGSKERLVPMGEEAIVWVERYLRGARDELLGGKPSDVLFPSTRGDQMTRQ 73

Query: 268 QFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
            F    K +AT AG+ KS   H +R   AT   + GA    +    G   +   + YT  
Sbjct: 74  TFWHRIKHQATVAGIGKSLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHL 133

Query: 326 ADRIRLGIKNSR 337
           A R RL   +++
Sbjct: 134 A-RARLQELHAK 144


>gi|154175082|ref|YP_001408312.1| metallo-beta-lactamase family protein [Campylobacter curvus 525.92]
 gi|112803167|gb|EAU00511.1| metallo-beta-lactamase family protein [Campylobacter curvus 525.92]
          Length = 353

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/194 (16%), Positives = 81/194 (41%), Gaps = 18/194 (9%)

Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGS------QPRLAFEFLLYSGLRCSDSCRAGVQHL-- 217
           +  +     ++E++++F +            + RL  + ++++G+R S++     + +  
Sbjct: 160 KGQKLPEFMSEEEVKKFLNAIDTADFKVNTNRNRLIIKIIVFTGIRVSEALNLKRKDISE 219

Query: 218 QNNIFSIKTQKTGTIITV-----ELPDGFMKLLAMTPIGKE-TFFINNDKQKMNATQFSI 271
              ++ I+ +  G    +      L +  + ++A+  I KE   FIN    ++     S 
Sbjct: 220 DGELYVIRIRGKGNKYRIVMIKRALIEDLLDMIAINYINKEGYLFINKKGTRLTQAYVSR 279

Query: 272 WFKAKATKAGVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GAD 327
             +    +AG+ K    AH +R   AT+          +    G  +++ +  YT    D
Sbjct: 280 IVEQILFRAGIRKEKNGAHMLRHTFATLLYKKQKDLVLVQEALGHASLNTSRIYTHFDND 339

Query: 328 RIRLGIKNSRRISS 341
           +++L  + ++ +S 
Sbjct: 340 KLKLAAQVAQDLSE 353


>gi|270293714|ref|ZP_06199916.1| tyrosine type site-specific recombinase [Bacteroides sp. D20]
 gi|270275181|gb|EFA21041.1| tyrosine type site-specific recombinase [Bacteroides sp. D20]
          Length = 403

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 54/284 (19%), Positives = 101/284 (35%), Gaps = 29/284 (10%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYF---DQIIRKSG--DFDYRKITTKHIRSGVES 125
              LI E R+S     +       + +Y    + +  K G  D  + ++    I S V  
Sbjct: 116 FATLIEEKRQSVGILIVKTTYTHLYRAYLHLKEFLEYKYGVTDIPFTQVDFDFIESYVYY 175

Query: 126 RK----HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
            K     + S+    +  +R +   A+ +  +  +P     RP+R T   +  + +++++
Sbjct: 176 LKVNLQLSASTTNNTIKPLRRVVMRALNKGLMYQDPFFGY-RPQRITITRKWLSMDEIER 234

Query: 182 FKSF---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTII 233
                      +  R  F F  ++GL   D       ++           +  QKT T  
Sbjct: 235 LMQVDMKHESANFIRDMFLFSTFTGLAYVDLKNLRHDNIVRQEDGKQWIVLNRQKTRTTS 294

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKM---NATQFSIWFKAKATKAGVNK--SAHG 288
            + L D  ++L+      + T F   D +           I  K  A  A ++K  + H 
Sbjct: 295 YIPLLDIPLRLIEKY---RNTAFAGLDGKVFRLCTIENADIQLKKIAKAANIDKCLTYHM 351

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAET---YTKGADRI 329
            R   AT+    G     +  T G +++   +     T  ADRI
Sbjct: 352 GRHSYATLCLSMGVPIETISQTLGHRSISTTQINEDMTNLADRI 395


>gi|153829038|ref|ZP_01981705.1| site-specific recombinase IntI4 [Vibrio cholerae 623-39]
 gi|229526098|ref|ZP_04415502.1| integron integrase IntI4 [Vibrio cholerae bv. albensis VL426]
 gi|148875467|gb|EDL73602.1| site-specific recombinase IntI4 [Vibrio cholerae 623-39]
 gi|229336256|gb|EEO01274.1| integron integrase IntI4 [Vibrio cholerae bv. albensis VL426]
          Length = 320

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 43/294 (14%), Positives = 88/294 (29%), Gaps = 57/294 (19%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWA 147
           A  +  ++  +  + I          +  K +   +         A +  +       + 
Sbjct: 19  AKKTIEAYLHWITRYIHFHNKKHPSLMGDKEVEEFLTYLAVQGKVATKTQSLALNSLSFL 78

Query: 148 VRQEYVAINP-CLSVE--RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGL 204
            ++  +   P  L +   R + + +     T++++++         + +L  + L  SGL
Sbjct: 79  YKE--ILKTPLSLEIRFQRSQLERKLPVVLTRDEIRRLLEIVDP--KHQLPIKLLYGSGL 134

Query: 205 RCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLAMTPIGKETFFINN--- 259
           R  +  R  VQ +  +  +I+    K G   TV L       L       + ++  +   
Sbjct: 135 RLMECMRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHLKEQIALAKRYYDRDLHQ 194

Query: 260 -------------------------------------------DKQKMNATQFSIWFKAK 276
                                                       +  MN T      +  
Sbjct: 195 KNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVMRRHHMNETVLQKAVRRA 254

Query: 277 ATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           A +AG+ K+   H +R   AT   + GA    +    G   V   + YT   DR
Sbjct: 255 AQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHVLDR 308


>gi|307565773|ref|ZP_07628242.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
 gi|307345599|gb|EFN90967.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
          Length = 409

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 63/198 (31%), Gaps = 17/198 (8%)

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-----SEGSQPRL 194
           ++ + + A R+          V+  K   +  +   KE +++ K+        E    R 
Sbjct: 192 LKTVCRLAYREGLADTLLFDKVKISKGNKKLPKALDKEALEKLKALCFEDLEEEMETARD 251

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVELPDGFMKLLAMTP 249
            F F  Y G    D       HL  +            KTG    ++L    ++L+    
Sbjct: 252 IFLFACYVGAAYCDLMELSKSHLVRDDEGKMWLKFNRHKTGVPCRIKLLPEAIRLIERFH 311

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS-ADAGATAHE 306
             +    +      +    +    KA   +AG+    + H  R   AT+   + G     
Sbjct: 312 CDERETLL----PYIKYKSYQTCLKALRLRAGISFPFTTHTARHTFATLITLEQGVPIET 367

Query: 307 LMATYGWKTVDQAETYTK 324
           +    G   +   E Y K
Sbjct: 368 VSKMLGHSNISMTERYAK 385


>gi|325911644|ref|ZP_08174052.1| phage integrase, N-terminal SAM domain protein [Lactobacillus iners
           UPII 143-D]
 gi|325476630|gb|EGC79788.1| phage integrase, N-terminal SAM domain protein [Lactobacillus iners
           UPII 143-D]
          Length = 326

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 40/264 (15%), Positives = 86/264 (32%), Gaps = 14/264 (5%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----K 127
              I+ +  +      +  S   +ES   ++  K G  D R ITT+ IR  + +     K
Sbjct: 49  ADYIALFLAAKKIEGRSEKSLKYYESTILKMTEKVG-KDARYITTEDIREYLSNYQLNHK 107

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            +  +       +   F W   ++Y+   P   + + K        ++ E+++  +   +
Sbjct: 108 SSKVTIDNIRRILSSFFSWLEDEDYILKIPVRRIHKVKTGQSIKETYSDEELEIMRDSCT 167

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG-----FM 242
           +  +     + L  +G+R  +        +            G    +   D        
Sbjct: 168 K-IRDLAIIDMLASTGMRVGEMVLLNRDDVNFEERECMVFGKGDKERIVYFDARTKLHLE 226

Query: 243 KLLAMTPIGKETFF--INNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISAD 299
           K L          F  ++   +++         +    + G+ K   H  R+  AT + D
Sbjct: 227 KYLDSRTDNNSALFTSLSAPHERLGIAGIEARLRKLGGELGIYKVHPHKFRRTLATKAID 286

Query: 300 AGATAHELMATYGWKTVDQAETYT 323
            G    +L    G + +D    Y 
Sbjct: 287 KGMPIEQLQKLLGHQRIDTTLQYA 310


>gi|320188610|gb|EFW63272.1| Integrase [Escherichia coli O157:H7 str. EC1212]
          Length = 333

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/311 (13%), Positives = 90/311 (28%), Gaps = 30/311 (9%)

Query: 30  GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAV 89
           G+RIR  +  +S  +      +           S  +    L  LI+ + +     +L+ 
Sbjct: 22  GKRIRKQFATKSEALSYERRLMNSRVGDEFQDGSGPR----LSELIARWFEMYG-KTLSS 76

Query: 90  NSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-----------KHTPSSAIQFLT 138
                 +   + I  + GD    +       +  E R           K + ++  +  +
Sbjct: 77  G--AERKVKLEAICSRLGDPFASQFDKNMFATYRERRLSGEWNPKGKKKLSEATVNREQS 134

Query: 139 SMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL--A 195
            +  +F    R   +   NP   + + + + + +     +++++      E     L   
Sbjct: 135 YLHAVFAELKRLGEWSGENPLTGIRKFREEEKELAFLYVDEIERLLIACDESRNKDLGVV 194

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF 255
               L +G R S++       +     +    K     TV +      +L   P  +   
Sbjct: 195 VRIGLATGARWSEAEGLKQSQVLPGRITFVKTKGKKNRTVPISPQLQAML---PKKRGAL 251

Query: 256 FINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKT 315
           F            F    K    +    +  H +R   A+     G     L    G   
Sbjct: 252 F------SPCYEAFDAAIKRAKIELLDGQLTHVLRHTFASHFMMRGGNILVLQKILGHSD 305

Query: 316 VDQAETYTKGA 326
           +     Y   A
Sbjct: 306 IKMTMRYAHFA 316


>gi|257453044|ref|ZP_05618343.1| phage integrase family site specific recombinase [Fusobacterium sp.
           3_1_5R]
 gi|317059582|ref|ZP_07924067.1| phage integrase [Fusobacterium sp. 3_1_5R]
 gi|313685258|gb|EFS22093.1| phage integrase [Fusobacterium sp. 3_1_5R]
          Length = 371

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 58/347 (16%), Positives = 115/347 (33%), Gaps = 43/347 (12%)

Query: 15  RTRHGKIIYYFRKG-----HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS----PR 65
            TR+GK  Y           G++IR       +F     S +       +Y        +
Sbjct: 15  TTRNGKTYYKASVTIGYDMDGKQIR------KSFGSFRKSIVVDKINTVKYEVKNDLLEK 68

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFE--SYFDQIIRKSGDFDYRKITTKHIRSGV 123
           +       L   + +      ++ N+   +E       +     +    +IT   ++   
Sbjct: 69  QGDIKFGKLFLSWIQDFKKVEVSGNTFAEYEVCYRLRILPYLLANAKANEITLPFLQKYF 128

Query: 124 ESRKHTPS--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR-KTEGIRPWTKEDMQ 180
            S ++  S     +    +     +A+ Q ++  NP   ++ PK+ K+   + +TKE+  
Sbjct: 129 NSLQNEWSVNVIRKTYVKINACLNFALIQGFINRNPAKGIKLPKQEKSTKYKVFTKEEQD 188

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-----------TQKT 229
                 +  +    A  F  Y+GLR  +      + L   + SIK            +KT
Sbjct: 189 LILQTLNLRNIVDTAIYFDFYTGLRLGELLGLKWEDLDGRLLSIKRQYQKNIEIAEQRKT 248

Query: 230 GTIIT----------VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK 279
             ++           + LP+  + LL+      E  F   D Q +   +      A   K
Sbjct: 249 TYVLKKLKTIHSYRCMTLPNKIVNLLSNMERTSEFIFPGIDGQPLEVKKLPRRLAAICKK 308

Query: 280 AGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
             + ++S H +R   AT   +       +    G   +    + YT 
Sbjct: 309 LNIPHRSFHSIRHSFATRLFEKNVQIKTVQELMGHSEIATTMDIYTH 355


>gi|218203973|ref|YP_002364826.1| integrase family protein [Cyanothece sp. PCC 8801]
 gi|218169724|gb|ACK68459.1| integrase family protein [Cyanothece sp. PCC 8801]
          Length = 362

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/287 (13%), Positives = 78/287 (27%), Gaps = 68/287 (23%)

Query: 112 RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
           R     + R  V+ +++  ++    LT +R  +  AV +  +  NP L ++ P+   +  
Sbjct: 63  RDDLKSYRRWLVDGQQYKCATIALKLTVVRRFYAGAVERGLILANPALGIKPPRETIDPA 122

Query: 172 RP---WTKEDMQQFKSFWSE-----GSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNI 221
                  + ++ +              + R     ++  G R  +  RA +  +  +   
Sbjct: 123 ERINYLEEAEVTRLLESLPTENTVGALRDRFLVAVMVLEGCRTVEMHRASIGDIVKRGGD 182

Query: 222 FSIKTQKTGTIITVELPDGFMKL----LAMTPIGKETFFI----------NNDKQKMNAT 267
             I+     +   V L     KL    L       E                   +++  
Sbjct: 183 IGIRVSGKRSRRIVPLTPDLAKLLNKYLNARKRSGEALLADTPLFIALDKRTYGGRLSRR 242

Query: 268 QFSIWFKAKATKAGVN-------------------------------------------- 283
                       +G+                                             
Sbjct: 243 SIQRVIDKYLQASGLKEQPTKQKSPKRASNQSHQPSSGEKQRSSQSASSTSTKFQQPERQ 302

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
            SAH +R  + T++  AG+   ++    G         Y   ADR R
Sbjct: 303 LSAHSLRHTAGTLAIRAGSDLRQVQDLLGHADPRTTALYAHVADRWR 349


>gi|148559918|ref|YP_001259740.1| site-specific tyrosine recombinase XerC [Brucella ovis ATCC 25840]
 gi|148371175|gb|ABQ61154.1| tyrosine recombinase XerC [Brucella ovis ATCC 25840]
          Length = 315

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 49/291 (16%), Positives = 92/291 (31%), Gaps = 31/291 (10%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFES----YFDQIIRKSGDFD----YRKITTKHIRS 121
           L     E+ KS      L+ N+ I++E     +   +    G+         +    +RS
Sbjct: 15  LAAAREEWLKSLKTMRRLSDNTLIAYERDTRQFLQFLTGHLGEPPSLKEIGNLRIADLRS 74

Query: 122 GVESRKHTPSSAIQF---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
            + +R++  + A      L  +R L +   ++  V      ++  P++     +P T +D
Sbjct: 75  FLANRRNDGAGARTLGRGLAGVRSLLRHLEKRGLVNAAGASAMRAPRQPKSLPKPLTADD 134

Query: 179 MQ-------QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKT 229
            +       Q        ++       L   GLR S++       L +        T K 
Sbjct: 135 ARRVVSADGQMAEEPWIAARNAAVLTLLYGCGLRISEALGLSGDALSDPSARSMTITGKG 194

Query: 230 GTIITVELPDGFMKLLAMTPI-------GKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
                V L     K +A             +  F       ++A       +      G+
Sbjct: 195 SKTRLVPLLPAVHKAVAQYRALCPFDLSAGQPLFRGAKGGPLHAAIIQREMQKLRAGLGL 254

Query: 283 N--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
               + H +R   AT     G     +    G  ++   + YT G D  RL
Sbjct: 255 PDSATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQVYT-GIDTQRL 304


>gi|330502138|ref|YP_004379007.1| phage integrase family protein [Pseudomonas mendocina NK-01]
 gi|328916424|gb|AEB57255.1| phage integrase family protein [Pseudomonas mendocina NK-01]
          Length = 342

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 51/319 (15%), Positives = 104/319 (32%), Gaps = 26/319 (8%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEY 78
           G+ +   +   G+R R  +  ++  +  Y   +T +       N   +    L  L+  +
Sbjct: 9   GRWLADVQPIRGQRFRKLFKTKAEALR-YEQYITANKAADPAWNPKAQDRRRLSELVGLW 67

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK---HIRSGVESRKHTPSSAIQ 135
               H   L    R   ++  D +  +  D    K+      H R        TP +   
Sbjct: 68  F-DLHGHMLKDGERR--KAKLDALCVRLRDPIAMKLDPATYAHDRRLRAEAGITPKTLNN 124

Query: 136 FLTSMRVLFKWAVRQEYVA-INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS---Q 191
            L  +R +F        +   NP   ++  + +   +   T+E +    +   EG     
Sbjct: 125 ELGYIRAVFNELRGLGQIDYANPLELMKLYRIEERELSWLTQEQIADLLTSIREGCDNPH 184

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251
                   L +G R S++       L+N   +    K+  + TV +              
Sbjct: 185 VEPIVLLCLATGARWSEAECLTPSRLRNGAVTYSKTKSSKVRTVPIQPEL---------- 234

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGV----NKSAHGVRKFSATISADAGATAHEL 307
            E F  ++ K+    T     F+   +++G+     +++H +R   A+     G     L
Sbjct: 235 -EAFIRDHWKRHGQFTGAITSFRRALSRSGIVLPKGQASHALRHTFASHFMQKGGNILTL 293

Query: 308 MATYGWKTVDQAETYTKGA 326
               G  ++     Y   A
Sbjct: 294 QKILGHSSLAMTMRYAHLA 312


>gi|237710667|ref|ZP_04541148.1| tyrosine type site-specific recombinase [Bacteroides sp. 9_1_42FAA]
 gi|229455389|gb|EEO61110.1| tyrosine type site-specific recombinase [Bacteroides sp. 9_1_42FAA]
          Length = 272

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 49/235 (20%), Positives = 84/235 (35%), Gaps = 35/235 (14%)

Query: 110 DYRKITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK-- 165
           +  KI  +     +E R   ++       L ++  L+                VE PK  
Sbjct: 34  NLSKIRLQTFVDYMEERLAPNSVRQYAAKLKAVLNLYN-------------EEVELPKDY 80

Query: 166 ------RKTEGIRPW-TKEDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQ 215
                 +       W T E++++  ++  + +     R  F    ++G R SD  R   +
Sbjct: 81  NKILSVKNVRSTNVWLTDEELERIITYVPKNANEQLVRTQFLIGAFTGCRHSDYTRLNNR 140

Query: 216 HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP---IGKETFFINNDK--QKMNATQFS 270
           ++   + S  + KT T  TV L     +LL   P   +   TF  N     +K   T+  
Sbjct: 141 NIVGGMISYVSLKTKTHATVPLKPIVKELLTNLPKEEVSDPTFNNNIRNICRKAGITEAV 200

Query: 271 IWFKAKATKAGVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
             FKA     G      S+H  R+  AT     GA  + +    G  +V+  + Y
Sbjct: 201 KVFKAGKEVEGEKWEFVSSHTARRSFATNLYLRGADLYSISQMMGHASVEMTQNY 255


>gi|37677230|ref|NP_937626.1| putative integrase [Vibrio vulnificus YJ016]
 gi|37201775|dbj|BAC97596.1| putative integrase [Vibrio vulnificus YJ016]
          Length = 296

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/268 (13%), Positives = 85/268 (31%), Gaps = 22/268 (8%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KH 128
              L  ++            +  ++     +I           +T + +R        + 
Sbjct: 9   FDDLYQQHLTQLKLQGKRAKTISAYSLAVRRITEYFDRCP-DTLTIEDLRRYFSQLIGQV 67

Query: 129 TPSSAIQFLTSMRVLFKWAV--RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
           + S+       ++  +K  +  + E++       + +P +        + E + Q  +  
Sbjct: 68  SWSTIKLDRCGLQFFYKHTLNKQWEWI------GIIKPPKVKRLPNIISPEQVAQIINTT 121

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN--IFSIKTQKTGTIITVELPDGFMKL 244
            E  + R+ F  L   GLR +++    +  + ++     I+  K G    V LP   +  
Sbjct: 122 REP-RYRVLFLTLYTMGLRINEALNLTISDIDSHNMQVHIRYGKGGKDRLVPLPHRTLHA 180

Query: 245 LAMT--PIGKETFFINNDKQ----KMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATI 296
           L               +  +      N        K    + G++K  + H +R   AT 
Sbjct: 181 LRRYWCTHRHPKLLFPSKGKCCDVAFNDQGAQKALKQVVHECGIHKRITPHSLRHCFATH 240

Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324
             + G     L    G  +++    YT+
Sbjct: 241 LLEQGLDLRSLQILLGHASLNTTARYTQ 268


>gi|238788398|ref|ZP_04632192.1| Integrase [Yersinia frederiksenii ATCC 33641]
 gi|238723644|gb|EEQ15290.1| Integrase [Yersinia frederiksenii ATCC 33641]
          Length = 334

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 43/249 (17%), Positives = 68/249 (27%), Gaps = 24/249 (9%)

Query: 93  ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR------------KHTPSSAIQFLTSM 140
            S       + R  GD      T K      E R              TP +    L  +
Sbjct: 80  KSRHQVLLNMCRDLGDPRAVDFTAKAFSQYREQRLNGEILRGTRTKGVTPRTLNIELAYL 139

Query: 141 RVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA--FE 197
           R +F    R   +   NP   V + +   + +   TKE + +        S P LA    
Sbjct: 140 RAMFNELSRLGEWRQDNPLRDVRQYRTDEQEMAFLTKEQIGKLLEECENSSVPELATVVR 199

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI 257
             L +G R S++       +     +    K     ++ + +     L   P      F 
Sbjct: 200 LCLATGARWSEAESLTHTQVMPYKVTYTKTKGKRNRSIPISEELFNSL---PKKNGRLF- 255

Query: 258 NNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVD 317
                      F    K    K    + +H +R   A+     G     L    G   + 
Sbjct: 256 -----PSCYAAFRTALKRTNIKLPDRQCSHVLRHTFASHFMMKGGNILVLQRILGHTDIK 310

Query: 318 QAETYTKGA 326
               Y   A
Sbjct: 311 MTMRYAHFA 319


>gi|313675312|ref|YP_004053308.1| integrase family protein [Marivirga tractuosa DSM 4126]
 gi|312942010|gb|ADR21200.1| integrase family protein [Marivirga tractuosa DSM 4126]
          Length = 413

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 52/299 (17%), Positives = 98/299 (32%), Gaps = 39/299 (13%)

Query: 75  ISEYRKSAHWGSLAVNSRISF---ESYFDQIIR---KSGDFDYRKITTK---HIRSGVES 125
           I  Y +     +LA  +  ++   E+Y  + +    K+ D   + IT+K        + +
Sbjct: 112 ILAYHEEKMKNTLAPGTLKNYGATENYLKRFLAAKHKTDDIKLKDITSKFVFDFEYYLRT 171

Query: 126 RK----HTPSSAIQFLTSM---RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
            K    H P S    +  M   + L   A++ E++  NP  +   PK         T+ +
Sbjct: 172 SKPIDHHNPLSNNGVMKHMERFKKLINLALKIEWIEKNPFRNFT-PKFDRVEREFLTEAE 230

Query: 179 MQQFKSFWSEGSQ---PRLAFEFLLYSGLRCSDSCRAGVQHL-----QNNIFSIKTQKTG 230
           + + K     G +    R  F F  Y+GL   D      +++          S   QKT 
Sbjct: 231 LTKIKEK-DFGRRLEQVRDIFVFSCYTGLSFIDVANLSEENIIIGMDGEKWISTHRQKTF 289

Query: 231 TIITVELPDG----FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284
             + + L         K             +     +      + + K  A    + K  
Sbjct: 290 NKVFLPLLPQAEAILEKYKDNPQAQHRGILLPAASNQKT----NAYLKEIADLCEIKKKL 345

Query: 285 SAHGVRKFSAT-ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS--RRIS 340
           + H  R   AT ++   G     +    G   +   + Y K  +        +  +R+S
Sbjct: 346 TFHIARHTFATTVTLTNGVPIETVSKMLGHTKLANTQIYAKVVENKIGTDMAALKKRLS 404


>gi|310779773|ref|YP_003968105.1| integrase family protein [Ilyobacter polytropus DSM 2926]
 gi|309749096|gb|ADO83757.1| integrase family protein [Ilyobacter polytropus DSM 2926]
          Length = 356

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 53/347 (15%), Positives = 120/347 (34%), Gaps = 49/347 (14%)

Query: 15  RTRHGKI--IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK-PTTL 71
           + ++GK    +YF    G +I         F   + +       +RE+I   + +   + 
Sbjct: 5   KDKNGKWISRFYFTNYKGEKI-------QKFKRGFKTKREAQEWEREFIAKSKFEITMSF 57

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVES----- 125
             L   Y +      L  N+ ++     ++ ++    + +  KIT   IR          
Sbjct: 58  NSLYEMYLEDLS-HRLRENTIMTKRHIIEKKVLPFFKEMEIGKITPVLIRKWQNKLIKYE 116

Query: 126 -----RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP-KRKTEGIRPWTKEDM 179
                + ++ +        +  +  +AV+   +  NPC       K++ + +  WT E+ 
Sbjct: 117 DPKTNKLYSQTYIKTINNQLVAILNYAVKYHSLNENPCHKAGTIGKKQADEMDIWTVEEF 176

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK----------- 228
           ++F       S   + F  L ++G+R  +     +  +     +I+  K           
Sbjct: 177 EKFAECLHHKSISFVGFNILFWTGIRIGELLALTINDIDLKNRTIRINKSYQRLNKEDVI 236

Query: 229 ------TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM---NATQFSIWFKAKATK 279
                  G  I +++ +    +L       +T +      ++      +F    K  + K
Sbjct: 237 TDPKTAKGNRI-IKITENLANILVNYI---DTLYNVETSDRLIISTKYRFHHDMKLYSEK 292

Query: 280 AGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
           A V K   H +R   A++    G +   +    G + ++    TY+ 
Sbjct: 293 AKVKKIRVHDLRHSHASLLIHLGVSPLAIAKRLGHEKIETTLNTYSH 339


>gi|291326772|ref|ZP_06125804.2| putative integrase/recombinase y4rA [Providencia rettgeri DSM 1131]
 gi|291312880|gb|EFE53333.1| putative integrase/recombinase y4rA [Providencia rettgeri DSM 1131]
          Length = 322

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 45/273 (16%), Positives = 98/273 (35%), Gaps = 34/273 (12%)

Query: 85  GSLAVNSRISFESYFDQIIRK---SGDFDYRKITTKHIRSGVESRK---HTPSSAIQFLT 138
              A ++R +      + +R     G  +   +T  H+R  + S+     TP S    ++
Sbjct: 33  RGFARSTRETSIRIVGRFLRDKFNDGAINLSTLTPAHVRDFLASQANVYRTPVSFSLVVS 92

Query: 139 SMRVLFKWAVRQEY-------VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----S 187
           S+R  F+W + Q+           NP        ++    +  + ++++Q  +       
Sbjct: 93  SLRGYFRWRIMQKDDLYVLIGALANPANW-----QQASLPKSLSTDEIEQLLNSLGQTDP 147

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLL 245
            G +        L  GLR  +  R  +  +   +   +++  K      + LP      +
Sbjct: 148 IGLRADAMVRCALDLGLRIGEIARLSLDDIDWVSGTITLRRTKGRRDDVMPLPVTTGNAI 207

Query: 246 AM------TPIGKETFFINN---DKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSAT 295
           A               F ++    ++ ++ +  SI  +   T+AG+   SAH +R   A 
Sbjct: 208 AAYLQNGRPKTLHREVFASHKTPRERPISRSVVSIAIRQVYTRAGLQYTSAHLLRHTMAN 267

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADR 328
                GA+  ++      ++++    Y K   R
Sbjct: 268 RLLATGASIKDIADILRHRSLNATRIYAKLDSR 300


>gi|149911917|ref|ZP_01900516.1| Hypothetical bacteriophage integrase [Moritella sp. PE36]
 gi|149805010|gb|EDM65038.1| Hypothetical bacteriophage integrase [Moritella sp. PE36]
          Length = 322

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 52/318 (16%), Positives = 109/318 (34%), Gaps = 30/318 (9%)

Query: 13  KERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           + + R+GK     RK    +              Y   L  +  ++ ++  P      L+
Sbjct: 15  RPQGRNGK---RHRKKFKTK---------GEAQQYERWLLSTQNQKGWVEKP-ADKRPLR 61

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI---RSGVESRKHT 129
            LI  +    H+    +        +   I +  G     ++T +     R+   ++ + 
Sbjct: 62  DLIDLWY---HYHGQQLKRPEKELKHLLSIDKDLGYPRADQVTKQRFMQFRADKMAKGNK 118

Query: 130 PSSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
            ++  +    +  +F   +    Y   +P   + + K +   +    K+++ Q  S  S 
Sbjct: 119 ATTINRSQVRLSGVFTVLIDAGEYHNEHPLKGISKLKLRASEMGFLNKKEITQLLSNLS- 177

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248
           G +  +A +  L +G R S++       + +   +    K G   TV +   FM  +   
Sbjct: 178 GDELHVA-KLCLSTGARWSEAAELRGNDIIHGRVTFNDTKNGKNRTVPITPEFMNEIHNG 236

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELM 308
             G+     N+     +  +F    KA+       ++ H +R   A+     G     L 
Sbjct: 237 KTGR---LFNS-----SYMEFYDVLKAQGFDLPKGQATHVLRHTFASHFMMNGGNILTLQ 288

Query: 309 ATYGWKTVDQAETYTKGA 326
              G  T+ Q  TY   A
Sbjct: 289 KILGHSTIMQTMTYAHLA 306


>gi|110804320|ref|YP_687840.1| putative integrase [Shigella flexneri 5 str. 8401]
 gi|110613868|gb|ABF02535.1| putative integrase [Shigella flexneri 5 str. 8401]
 gi|281599655|gb|ADA72639.1| Site-specific recombinase, phage integrase family [Shigella
           flexneri 2002017]
          Length = 386

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/211 (17%), Positives = 74/211 (35%), Gaps = 21/211 (9%)

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
            +  + L  +R +   AV   ++   P   +  P+ K   IR  T+E+ ++  +  +   
Sbjct: 144 GTKTRHLAILRAILNMAVEWGWLDRAP--KISTPRVKNGRIRWLTEEESKRLFAEIAPHF 201

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGFMKLLA 246
            P + F     +GLR S+        +  +           K G  I V L +   ++L 
Sbjct: 202 FPVVMFAIT--TGLRRSNVTDLEWSQVDLDKKMAWMHPDETKAGNAIGVPLNETACQILR 259

Query: 247 MTPIGKETFFINNDKQKMNATQFS------------IWFKAKATKAGV-NKSAHGVRKFS 293
                 + +   + K    +                  +K    +AG+ N   H +R   
Sbjct: 260 KQQGLHKRWVFVHTKPAYRSDGTKTAAVRKMRTDSNKAWKGALKRAGISNFRFHDLRHTW 319

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324
           A+    +G +   L    GW+T++  + Y  
Sbjct: 320 ASWLVQSGVSLLALKEMGGWETLEMVQRYAH 350


>gi|37679961|ref|NP_934570.1| integrase [Vibrio vulnificus YJ016]
 gi|37198707|dbj|BAC94541.1| integrase [Vibrio vulnificus YJ016]
          Length = 402

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 50/352 (14%), Positives = 104/352 (29%), Gaps = 47/352 (13%)

Query: 20  KIIYYFRKGHGRRIRLPYPH---ESTFIPAYMSALTGSTPKREYINSPRKKPT------- 69
           K   Y+R    +R  L                    G     E +   R +         
Sbjct: 41  KYYLYYRIHGKQRNFLLGSANALTPAQARDLAKEKAGQVAAGEDVQDTRHEAKKREQRNS 100

Query: 70  -TLKWLISEYRKSAHWGSLAVNS-RISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR- 126
            TL   + E+  SA+  S+   + + S         +        +IT   I+  V  R 
Sbjct: 101 LTLSKFLEEHY-SAYLMSINAKTAQKSLMCIQSNF-KHLSTKPLVEITAWDIQQWVAERS 158

Query: 127 --KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
                P++       +R +F  AV   ++  +   +V+ P+   + IR  +  +      
Sbjct: 159 KAGRAPATISYAYNRLRAVFNRAVEWGFIDSHSLDNVKIPRIDNKRIRYLSVSEEAALLE 218

Query: 185 FWSEGSQ--------------PRLA-----------FEFLLYSGLRCSDSCRAGVQHL-- 217
                                 RL                L +G+R  +       H+  
Sbjct: 219 SLKARDARLKDEALQRYGKRAQRLVSQRYVDFLEPLIVLALNTGMRKGEILSLKWSHINM 278

Query: 218 QNNIFSIKTQ--KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKA 275
           ++   +I+++  K+    T+ L +    +L           +  ++       +   +++
Sbjct: 279 EDRYLTIRSENAKSKNKRTIPLNNTVYTMLQAWHEQNPDTELVFERNGKPLDSYQYQWES 338

Query: 276 KATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
              +AG+ N   H +R   A+      A  + +    G   +     Y   A
Sbjct: 339 LLKEAGIENFRFHDLRHHFASKLVMKEADLNVVRELLGHADLKMTLRYAHLA 390


>gi|258509880|ref|YP_003172631.1| phage-related integrase [Lactobacillus rhamnosus GG]
 gi|257149807|emb|CAR88780.1| Phage-related integrase [Lactobacillus rhamnosus GG]
 gi|259651144|dbj|BAI43306.1| phage integrase [Lactobacillus rhamnosus GG]
          Length = 385

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 55/356 (15%), Positives = 108/356 (30%), Gaps = 50/356 (14%)

Query: 13  KERTRHGKIIYYFRK-------GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
           K  T+ GK  +  +           ++ ++    ++       +A          +   +
Sbjct: 6   KYATKDGKEFWRVQVFAGNDLQTGHKKYKVRRGFKTKKEATVAAARLELAISNGDLEEEK 65

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE 124
            KP   + +  E+  +    ++  ++       F+  I+   G      ITTK ++  V+
Sbjct: 66  PKPVFFRDVYEEWYGNYI-NTVRESTWARTAGMFNNHILPAFGGKRIATITTKDVQKAVK 124

Query: 125 SRKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT-EGIRP---WTKEDM 179
                T ++  ++   +  +  +AVRQ Y++ NP  +V  P      G +P   WTKE M
Sbjct: 125 RWFEFTSANYKRWYNYVSSVMDYAVRQGYMSKNPAKAVVLPHHDDLAGDKPENFWTKEQM 184

Query: 180 QQFKSFWSEGSQ--PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT----GTII 233
             F +   + +     + F  L ++G+R  +        +     SIK  KT        
Sbjct: 185 NHFFACIDQENHFDVFIMFRVLAFTGVRRGELLALTWNDVSFKENSIKVNKTLTQGDKGH 244

Query: 234 TVELPDGFMKLLAMTPIGKET----------------------------FFINNDKQKMN 265
            +             P+  +T                             F N      +
Sbjct: 245 QIVQAPKTRAGRRTIPVDGQTMAYLKRWRRIQQETFLQLGINTMQPNQLLFTNTKNGYQS 304

Query: 266 ATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
               S          G+    + HG R    +    AG     +    G       
Sbjct: 305 LNTPSKRLHKLQDDNGLTPRITIHGFRHSFISNLLIAGVPVTSVQKLVGHTDPTIT 360


>gi|315179070|gb|ADT85984.1| phage-related integrase [Vibrio furnissii NCTC 11218]
          Length = 341

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/268 (14%), Positives = 92/268 (34%), Gaps = 18/268 (6%)

Query: 93  ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSSAIQFLTSMRVLFKWAVRQE 151
            +F S   +++   G      +T + +   + S    + +S  ++   +  LF  AV  E
Sbjct: 73  KTFLSRSKRVMAAFGKERVTDVTRRDVERFLNSLTDLSHASINRYHAFLSKLFSMAVEHE 132

Query: 152 YVAINPCLSVERPKRKTEGIRPWTKEDMQQF--KSFWSEGSQPRLAFEFLLYSGLRCSDS 209
            +  +P   V++        R  + ++ + F   +          A    L +G+R  + 
Sbjct: 133 IIDKSPVKGVKKRVENNAKDRVLSSKEAESFCRNACAEPNFLHASALMLSLLTGMRIGNV 192

Query: 210 CRAGVQHLQNNIFS--IKTQKTGTIITVELPDGFMKLLAM--TPIGKETFF--INNDKQK 263
                  L +++ S  +   K+G    +   +   +L+         +  F  +NN  + 
Sbjct: 193 MSLTRAMLADDLSSALLPMTKSGKSQRIYFSEPAKRLIRKCLKVSFNDWVFPSLNNRGEH 252

Query: 264 MNA-----TQFSIWFKAK-ATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVD 317
           +        +     K +    A    + H +R+  AT    A         + G   V+
Sbjct: 253 IAYPRACMERIQQAMKQEGCLDA--PFTIHDLRRTYATQMLLATNDIRLAQQSLGHSNVN 310

Query: 318 QAETYTKGADRIRLGIKNSRRISSVVDS 345
             E Y    +   L   + + + +++ +
Sbjct: 311 VTERYAYYQN-THLAQASQQTVDAMLPN 337


>gi|268611299|ref|ZP_06145026.1| phage integrase family site specific recombinase [Ruminococcus
           flavefaciens FD-1]
          Length = 360

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/254 (16%), Positives = 85/254 (33%), Gaps = 30/254 (11%)

Query: 101 QIIRKSGDFDYRKITTKH---IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINP 157
            I+ + G+     I           ++S+K +       L  +  +FK+AV   Y   NP
Sbjct: 91  HILPEFGEKTISSIQKDSLYSFIKTLQSKKLSSRYIRDILVLLSSVFKYAV-NTYHIYNP 149

Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFK-SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216
              V  PK+K   ++   +++ Q  +   +S  ++  L      Y+G+R  + C    + 
Sbjct: 150 FDDVVIPKKKYSDVKLLDEDEQQILRDELFSNPNRTTLGIALSYYTGIRIGELCALQWKD 209

Query: 217 LQNNIFSIKTQKTGTIIT-----------------------VELPDGFMKLLAMTPIGKE 253
           +      +  +KT   I                        + +PD  + L+ +     +
Sbjct: 210 IDIEKRLLTVRKTVQRIQLPYGTPKTKVIITEPKSESSVRVIPIPDCIITLMKIYKGNLD 269

Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYG 312
            F ++  ++          F +     G+     H +R   A+     GA    L    G
Sbjct: 270 DFILSGKEKPTEPRTMQYRFNSFLKNVGLPSIHFHALRHLFASNCIKLGADVKSLSEILG 329

Query: 313 WKTVDQA-ETYTKG 325
             +V+     Y   
Sbjct: 330 HSSVEITLNRYVHS 343


>gi|28898910|ref|NP_798515.1| putative pore-forming cytotoxin integrase [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|260363638|ref|ZP_05776445.1| integrase [Vibrio parahaemolyticus K5030]
 gi|260878890|ref|ZP_05891245.1| integrase [Vibrio parahaemolyticus AN-5034]
 gi|260896188|ref|ZP_05904684.1| integrase [Vibrio parahaemolyticus Peru-466]
 gi|28807129|dbj|BAC60399.1| putative pore-forming cytotoxin integrase [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|308088822|gb|EFO38517.1| integrase [Vibrio parahaemolyticus Peru-466]
 gi|308094279|gb|EFO43974.1| integrase [Vibrio parahaemolyticus AN-5034]
 gi|308115077|gb|EFO52617.1| integrase [Vibrio parahaemolyticus K5030]
          Length = 370

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 54/297 (18%), Positives = 101/297 (34%), Gaps = 43/297 (14%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           T+K  I  Y     + + A ++  S  S    I    G+F    ++   I   + S    
Sbjct: 11  TVKDYIDAYLIERKYCA-APSTLASDLSRAKNINEALGEFPINAVSHTQINMLLVSWHER 69

Query: 130 PSS--AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
             +    + LT +R +   AVR   +A NP   V+  K       P+TK+++ +     +
Sbjct: 70  FRNKTINEHLTILRRISLKAVRDGVIARNPMTGVQNFKTVDPEPNPFTKKELARMHECKN 129

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIK----------TQKTGTIITV 235
             +Q + A    L +GLR S+      Q +  +  +  ++           +  G++  V
Sbjct: 130 VCTQGQNAVMLNLLTGLRISELIALSWQDINWEREVLYVRRACVLNIYKCPKTKGSVREV 189

Query: 236 ELPD---------------GFMKLLAMTPIGKET---------FFINNDKQKMN-ATQFS 270
           +L                    + + +     +T         F      Q    A +F+
Sbjct: 190 DLNPLALKLLKEQLKLTGKRRPQTINILECDNKTFTKDSVSFIFLNTKTNQPFTDAKEFT 249

Query: 271 IW-FKAKATKAGVNKSAHG-VRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
              F     +AGV     G +R   A+     G +   L    G K+     + Y +
Sbjct: 250 ERFFIKFLEQAGVAHRGVGQLRHTFASQCLTTGISKDWLAVQMGHKSTTMIDKHYGR 306


>gi|319776181|ref|YP_004138669.1| hypothetical protein HICON_15320 [Haemophilus influenzae F3047]
 gi|317450772|emb|CBY86993.1| Putative uncharacterised protein [Haemophilus influenzae F3047]
          Length = 381

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 55/288 (19%), Positives = 102/288 (35%), Gaps = 36/288 (12%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           T+K  + EY ++A    L+ ++   ++   +++           +T   I++ ++ ++  
Sbjct: 88  TIKHYLDEYIETAKVRRLSPSTIAGYQKVINELSD-FHKVAVNSLTPAMIKNWIKQQRTK 146

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLS--VERPKRKTE--------GIRPWTKEDM 179
             +    L+ +R     AV    + INP     V+R K   +         + P+T +++
Sbjct: 147 TKTIRNKLSVLRSAIDEAVTDGILQINPVSQISVDRYKSTNKTASQDDEYEVDPFTPQEI 206

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-------------NNIFSIKT 226
           +          Q R  F+F L +GLR S+ C      +                +     
Sbjct: 207 ELILDNC-RFEQWRNLFKFALRTGLRSSELCALRWIDIDFKEKTAHVQQAKVVGVIKGTK 265

Query: 227 QKTGTII----TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK---ATK 279
            K+GT +     V + D     L  T      F     K+   A+  +I  KA     T+
Sbjct: 266 TKSGTRLIELDDVAI-DALQDQLNFTRKSDFVFSDPKTKKPW-ASADAIRKKAWIPTITQ 323

Query: 280 AGVNKS-AHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKG 325
           AG+     +  R   AT+    G     L    G K  +     Y K 
Sbjct: 324 AGIRYRNPYQTRHTFATMHISQGKNLFWLANQMGHKGPEMLFRHYGKY 371


>gi|295133331|ref|YP_003584007.1| transposase [Zunongwangia profunda SM-A87]
 gi|294981346|gb|ADF51811.1| putative transposase [Zunongwangia profunda SM-A87]
          Length = 414

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 52/290 (17%), Positives = 93/290 (32%), Gaps = 41/290 (14%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISF---ESYF-DQIIRKSG--DFDYRKITTKHIRSGV 123
           TL +LI+ Y K      L   +  ++   E+Y  D +  +    D   ++I  +      
Sbjct: 109 TLTYLIN-YHKEKMDKVLKYGTMKNYTTTENYLKDYLKAQHHTSDVYLKQIDYQFTLGFE 167

Query: 124 ESRKHTPSSAI----QFLTSMRVLFKWAVRQEYVAINPCLS-------VERPKRKTEGIR 172
              +  P        + +   + L + A   +++  NP          V+        + 
Sbjct: 168 SYLRVLPGLQNNGVMKHMERFKKLMRLAEHLDWIEKNPTKRFKLRFDQVDMVYLNKTELE 227

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQ 227
               E+ ++        +  R  F F  Y+GL  +D+      +LQ           +  
Sbjct: 228 KIKNEEFEK-----PVLTINRDIFVFACYTGLAYADAKALNKNNLQIGVDGNKWIYTRRS 282

Query: 228 KTGTIITVELPDGFMKLLAMTPI-----GKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
           KT T + V L     ++L          G E        QK N      + K  A +  +
Sbjct: 283 KTNTAVRVPLLAEAERILKRYKTHPKIDGTEKLLPVYSNQKTN-----QYLKEIAKEVKI 337

Query: 283 NK--SAHGVRKFSAT-ISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            K  S H  R   AT I+   G     +    G   +   + Y +  D  
Sbjct: 338 KKQLSFHTARHTFATTITLANGVPIETVSKLLGHTKLSTTQIYARVIDSK 387


>gi|269203657|ref|YP_003282926.1| integrase [Staphylococcus aureus subsp. aureus ED98]
 gi|262075947|gb|ACY11920.1| integrase [Staphylococcus aureus subsp. aureus ED98]
          Length = 345

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 51/324 (15%), Positives = 111/324 (34%), Gaps = 24/324 (7%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT-TLKWLISE 77
           GK   Y  K  G+R R        F     +   G     E  N        TL+     
Sbjct: 8   GKKWQYEFKHEGKRYRKKG-----FRTKREANSAGLDKLNELRNGFNIDNGITLEEYFEN 62

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRSGVE--SRKHTPSSAI 134
           + K+     +  N+   +++    I + K G  +  KI  +  +  +   S++H   +  
Sbjct: 63  WIKTYKEPVVKENTYRHYKNALQHIQQHKIGKMELSKINKQVYQKFINDYSKEHAKETIR 122

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSV-----ERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
           +   ++R     A+    +  NP   V     +  K + E     T+ +M + +    + 
Sbjct: 123 KTNGAIRSALDDALYDGLIFKNPAYKVNYKAGKPTKSEKEKFISVTEYEMLK-EHVKKKR 181

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTG-TIITVELPDG----FM 242
           ++  LA   ++ +G R S +    ++H+    N   I  +KT  +   + +        M
Sbjct: 182 TRSSLALFIMICTGCRVSGARNIKIEHINQVKNTIFIDERKTDTSPRYISIAKSDMKHIM 241

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG 301
            +++   I  + +        +     +   K+      +   ++H +R    +     G
Sbjct: 242 DVISSFAISYDGYIFKESGFIITLQAINNALKSACRVNNIPIITSHALRHTHCSYLLAKG 301

Query: 302 ATAHELMATYGWKTVD-QAETYTK 324
            + H +    G K +      Y+ 
Sbjct: 302 VSIHYISKRLGHKNIAITTSVYSH 325


>gi|262046670|ref|ZP_06019631.1| integrase [Lactobacillus crispatus MV-3A-US]
 gi|260573119|gb|EEX29678.1| integrase [Lactobacillus crispatus MV-3A-US]
          Length = 361

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/288 (12%), Positives = 87/288 (30%), Gaps = 27/288 (9%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-KH 128
           T      EY  +      A  ++  +      +    G+    K+  +  +S +    K+
Sbjct: 60  TFAQAYEEYTNTYKIPGKATTTQRRYNYSITIVKNYFGNVKLTKMNRQRYQSFLNDYGKN 119

Query: 129 TPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGIRP--WTKEDMQQFKSF 185
              + ++ L      F    +  + +  N    V      +   +      +++Q+    
Sbjct: 120 HAKTTVRLLNRYIKAFVHDCLSDKLITNNFTDRVNLTWNDSHSHKVQYLNYKEVQKLLES 179

Query: 186 WSEGSQP----RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------------ 229
                +P    R      +Y+G+R  +        +      IK  K+            
Sbjct: 180 LESNIKPTYISRYMIITAIYTGMRIGEIMALKWTDIDFKKHLIKVTKSYSYLDGKIKEPK 239

Query: 230 --GTIITVELPDGFMKLLAMTPIGKETF-FINNDKQKMNATQFSIWFKAKATKAGVNK-- 284
              +   + + +  + LL       + F F+    + +  T  +   K +  K  ++K  
Sbjct: 240 TESSKRVIRVSENLLDLLKQLKANHQKFVFMTQSGKIITTTAANQTLKKQLKKLNISKNH 299

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQ-AETYTKGADRIR 330
              H +R     +    G   + +    G  ++   A  Y    D +R
Sbjct: 300 FHFHSLRHTHVALLLFKGVPLYAISKRLGHSSMSMTASVYAYMLDELR 347


>gi|241992534|gb|ACS73608.1| IntI1 [uncultured bacterium]
          Length = 315

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/306 (13%), Positives = 92/306 (30%), Gaps = 62/306 (20%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129
           ++ + R+   +   ++ +  ++  +    IR  G      + +  + + +      RK +
Sbjct: 16  VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75

Query: 130 PSSAIQFLTSMRVLFK--WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            S+  Q L ++   +         ++       + RP+         T +++ +   F  
Sbjct: 76  VSTHRQALAALLFFYGKVLCTDLPWLQ-----EIGRPRPSRRLPVVLTPDEVVRILGFL- 129

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
           EG   RL  + L  +G+R S+  +  V+     +    ++  K      + LP+     L
Sbjct: 130 EGEH-RLFAQLLYGTGVRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSL 188

Query: 246 AMTPIGKETFFINN---------------------------------------------D 260
                    +++ +                                              
Sbjct: 189 REQLSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVR 248

Query: 261 KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           +       F   FK    +AG+ K  + H +R   AT    +G     +    G   V  
Sbjct: 249 RHHTYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVST 308

Query: 319 AETYTK 324
              YT 
Sbjct: 309 TMIYTH 314


>gi|254523064|ref|ZP_05135119.1| site-specific recombinase, phage integrase family [Stenotrophomonas
           sp. SKA14]
 gi|219720655|gb|EED39180.1| site-specific recombinase, phage integrase family [Stenotrophomonas
           sp. SKA14]
          Length = 329

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 55/320 (17%), Positives = 100/320 (31%), Gaps = 31/320 (9%)

Query: 17  RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76
           R G     +R G  R                 SA          I S          +  
Sbjct: 9   REGVAYLNWRDGGKRFRPSIGRVSPREAEEIRSAREAELRHGVRIISRAPLLRDFLDVWL 68

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----KHTPSS 132
           E+ K+ H       +    +S    I++  G      +    + +    R    K  P +
Sbjct: 69  EWYKAEH-----PTTHGKAKSELRIILQNLGHRPIDTLRPIELEAYKTQRLVKDKMAPET 123

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK-RKTEGIRPWTKEDMQQFKSFWSEGSQ 191
             + +  ++   +  V+ + +  NP   ++ P+  ++  +R +TK  MQQ  +  +  ++
Sbjct: 124 VGKEVRRLQAALRCGVQWKELDANPFEGIQAPRGVRSVAVRFYTKTAMQQLYA--ANAAR 181

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK---------TQKTGTIITVELPDGFM 242
             L   F+ ++G+R  +      +++      ++           K+G    V L     
Sbjct: 182 ANLWR-FMAHTGIRRCELMHLRHENVVAGRLLVESDPDEDGDGRTKSGKWREVPLNTHAA 240

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGA 302
             L   P    +               S WFK  AT AGV  S H +R         AG 
Sbjct: 241 AALVELPDPLVSVH---------KDTVSDWFKDDATAAGVGGSLHRLRHTFCAHMVMAGV 291

Query: 303 TAHELMATYGWKTVDQAETY 322
               +    G       E Y
Sbjct: 292 PLRRVQILAGHADYATTEKY 311


>gi|160945578|ref|ZP_02092804.1| hypothetical protein FAEPRAM212_03107 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443309|gb|EDP20314.1| hypothetical protein FAEPRAM212_03107 [Faecalibacterium prausnitzii
           M21/2]
          Length = 327

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 33/248 (13%), Positives = 76/248 (30%), Gaps = 14/248 (5%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS----AIQFLTSMRVL 143
           +  +   +    + ++   G    ++ITT  +R  +   +    S           +   
Sbjct: 66  SEKTLTYYSKTIEAMLNDVGKSP-QQITTDDLRKYLTDYQTQRRSSKVTIDNIRRILSSF 124

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203
           F W   ++++  +P   + + K        +T E ++  +   S   +     + L  SG
Sbjct: 125 FSWLEDEDFIVKSPVRRIHKVKTAKIIKETYTDEALELMRDNCST-VRDLAIIDLLASSG 183

Query: 204 LRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG-----FMKLLAMTPIGKETFFIN 258
           +R  +      + +  N         G    +   D          L          F+ 
Sbjct: 184 MRVGELVTLNREDINFNERECVVFGKGNKERLVYFDARTKIHLQNYLDERSDSNPALFVT 243

Query: 259 --NDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKT 315
                +++         +    +  +NK   H  R+  AT + D G    ++    G + 
Sbjct: 244 LKEPHERLMIGGVETMLRELGRRLKLNKVHPHKFRRTLATSAIDKGMPIEQVQQLLGHQK 303

Query: 316 VDQAETYT 323
           +D    Y 
Sbjct: 304 IDTTMRYA 311


>gi|282860291|ref|ZP_06269360.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
 gi|282586888|gb|EFB92124.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
          Length = 409

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 63/198 (31%), Gaps = 17/198 (8%)

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-----SEGSQPRL 194
           ++ + + A R+          V+  K   +  +   +   ++ K+        E    R 
Sbjct: 192 LKTVCRLAYREGLADFLLFDKVKISKGNKKLPKALDRGAFEKLKTLHFEDLEEEMETARD 251

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVELPDGFMKLLAMTP 249
            F F  Y+G    D       HL  +            KTG    V+L    ++L+    
Sbjct: 252 IFLFACYTGAAYCDLMELDKSHLVRDDESSLWLKFNRHKTGVPCRVKLLPEAIRLMEKLH 311

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS-ADAGATAHE 306
             +    +      M    +  + KA   +AG+    + H  R   AT+   + G     
Sbjct: 312 SDERETLL----PFMGYATYQSYLKALRLRAGISFPFTTHTARHTFATLITLEQGVPIET 367

Query: 307 LMATYGWKTVDQAETYTK 324
           +    G   V   E Y K
Sbjct: 368 VSKMLGHSNVSMTERYAK 385


>gi|170768983|ref|ZP_02903436.1| site-specific recombinase, phage integrase family [Escherichia
           albertii TW07627]
 gi|170122055|gb|EDS90986.1| site-specific recombinase, phage integrase family [Escherichia
           albertii TW07627]
          Length = 376

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 60/377 (15%), Positives = 114/377 (30%), Gaps = 64/377 (16%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKR-------- 58
           L P+  K   R+ K+ + +R     +       +        +       ++        
Sbjct: 14  LSPYFDK---RNNKVYWRYRHPITGKNHGLGSIDQKLAETIAAEANSRLARQQMEQMLSL 70

Query: 59  -EYINSPRKKPTTLKWLISEYRKS----AHWGSLAVNSRISFESYFDQIIRKSGDFDYRK 113
            E I S     +T+   ++ YRK        G + +N+     +       + G      
Sbjct: 71  QEKIISDTGGSSTVTIFLNNYRKIQQERYENGEIKLNTLKQKAAPLRVFDERFGTRPLDA 130

Query: 114 ITTKHIRSGVESRKHTPSSAIQ--FLTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTE 169
           IT K + S +E  K    + +   F   +  +F+ A +   V    NP  S ++P+    
Sbjct: 131 ITVKDVVSVLEEYKARGHNRMGQIFRKVLIDVFREAQQTGDVPPGFNPAESAKKPQV-RI 189

Query: 170 GIRPWTKEDMQQ-FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
             +  T ++    + +    G   +      L +G R SD C+     +++    ++ QK
Sbjct: 190 SRQRLTFDEWMMIYNAAEKNGYFLQRGMLLALMTGQRLSDICKMQFSDIRDGYLHVEQQK 249

Query: 229 TGTIITVE-----------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265
           TGT I +                        L    +         K           + 
Sbjct: 250 TGTRIAIPLALRCDKLNLTLDDVVSSCRDCVLSPWLLHHHHAKGTAK-------RGGMVK 302

Query: 266 ATQFSIWFKAKA-------TKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
               ++ FK             G   S H  R  S  +  + G     L    G      
Sbjct: 303 PATLTVAFKKARDSVDYNWRANGTPPSFHEQRSLSERLFREQGVDTKIL---LGHSNQKM 359

Query: 319 AETY--TKGADRIRLGI 333
            + Y   +G +  +L I
Sbjct: 360 TDIYNDARGKEWKKLVI 376


>gi|289704735|ref|ZP_06501158.1| site-specific recombinase, phage integrase family [Micrococcus
           luteus SK58]
 gi|289558545|gb|EFD51813.1| site-specific recombinase, phage integrase family [Micrococcus
           luteus SK58]
          Length = 381

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 50/307 (16%), Positives = 93/307 (30%), Gaps = 42/307 (13%)

Query: 49  SALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSG 107
           +A    +  R           T+  L   + +    G L  ++    ES     ++ + G
Sbjct: 42  AASVEVSKLRGEFIEAGAARATVGALAGPWVQ--RQGHLKPSALRPVESALRVHVLPRWG 99

Query: 108 DFDYRKITTKHIRSGVESR------------KHTPSSAIQFLTSMRVLFKWAVRQEYVAI 155
                ++ T  ++  +                 + ++  +    +  +   AV    +  
Sbjct: 100 SIPVAEVRTTDVQQWITDLSRGRPEATPPTSGRSATTVARCFGVLAAILDDAVADRRIVT 159

Query: 156 NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ 215
           NP   V+ PKR  +     + E +  F       +        L Y+GLR  ++    V+
Sbjct: 160 NPARGVKLPKRTPKPRVYLSHEQVHAFARASKYPTL----VLVLAYTGLRWGEASALRVR 215

Query: 216 HLQNNIFSIKTQ---------------KTGTIITVELPDGFMKLLAMT---PIGKETFFI 257
           HL      IK +               KT  +  V  P      LA         E  F 
Sbjct: 216 HLDMLRRRIKVEENAVDVGGVVHVGTPKTHRVRVVPFPRFLGDALAAQCEGKGRDELVFP 275

Query: 258 NNDKQKMNA----TQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYG 312
                 M+          W+ A    A V + + H +R  +A+ +  AGA    +    G
Sbjct: 276 GPGGGYMSPARVHEGHGSWWGAAVRAADVPRVTPHDLRHTAASFAVSAGANVKAVQRMLG 335

Query: 313 WKTVDQA 319
             +    
Sbjct: 336 HASAAMT 342


>gi|288904635|ref|YP_003429856.1| phage integrase [Streptococcus gallolyticus UCN34]
 gi|288731360|emb|CBI12911.1| putative phage integrase [Streptococcus gallolyticus UCN34]
          Length = 386

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 64/374 (17%), Positives = 121/374 (32%), Gaps = 66/374 (17%)

Query: 9   PFVTKERTRHGKIIYYFRKGH---GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
           P +    T+ GK  YY R+     G++  +      T   A   AL     K    +   
Sbjct: 9   PNIYTYETKKGK-RYYVRRKFKLVGKQTEVSASGLKTVAEA-RQALAEIENKIANGDYDP 66

Query: 66  KKPTTLKWLISEY----RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121
           +K  T+      Y     K+  W    V ++ S+ ++     ++ GD   + I      +
Sbjct: 67  RKNMTVDDYWQIYSENRIKTGRWAPDTVMTKTSWYNH--HFSKQFGDTLLKDIKRTKYEA 124

Query: 122 GVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV---------ERPKRKTEG 170
            + S    ++ ++ +Q       +   AV   Y+  NP L +         ++ +   E 
Sbjct: 125 YISSLLNSYSKATVVQINALFEAMVTDAVVNGYMDKNPILKIYIGKSNIPTKKKRLSLEE 184

Query: 171 IRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ------------ 218
            R W  ++  +      + +  RL      Y GLR S+        L+            
Sbjct: 185 FRAW--DECARKILSNYDYTMARLT-----YFGLRRSEVLGIKFSSLKLVNGRFRIFLDE 237

Query: 219 --------NNIFSIKTQKTGTIITVELPDGFMKLLAMT---------PIGKETFFI---- 257
                         +T K   ++  E  +   K +             +G+  F      
Sbjct: 238 SRTERRPEGGRMKTRTSKRYVLLDEETTELLQKAMMFARQIAKESNRILGQNDFIFVDEG 297

Query: 258 ----NNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGW 313
                   Q +     +  FK  + ++ ++ + H +R F AT    AG +   + A  G 
Sbjct: 298 ANLKKRRGQPIKYAHIATIFKKVSAESKIHATPHMMRHFFATQGQIAGVSIEHMAAALGH 357

Query: 314 KTVDQAETYTKGAD 327
            T    + YT   D
Sbjct: 358 STSYMTQQYTHIKD 371


>gi|211731865|gb|ACJ10161.1| integrase [Bacteriophage APSE-5]
 gi|211906281|gb|ACJ11658.1| putative phage-associated helicase [Candidatus Hamiltonella
           defensa]
          Length = 357

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 45/267 (16%), Positives = 94/267 (35%), Gaps = 29/267 (10%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE-----SRKHTPSSAIQFLTS 139
             L   +     S   ++  +     ++       R G+E     +++ + ++  + L  
Sbjct: 60  TRLKDITEAKIYSAISKMKNRQEQLRWKSRVNSAKRKGIEIPAYQAKEVSIATKAKHLAL 119

Query: 140 MRVLFKWA-VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEF 198
           ++ + + A    +++  +P   ++ P  + + IR    ++ ++  +   E    R   EF
Sbjct: 120 LKSMMRSAERDWKWIEKSPV--IKVPSAREKRIRWLEPDEAERLINECPEPL--RSTVEF 175

Query: 199 LLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254
            L +GLR S+        +           +  K+G  I V L D     L       + 
Sbjct: 176 ALATGLRRSNIINLAWSQIDMQRKVAWIEPENSKSGKAIGVALNDTACCTLTRQLGNHQK 235

Query: 255 FFI-------------NNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADA 300
           +                N  +KM     + W +A   +AG+ N   H +R   A+    +
Sbjct: 236 WVFVHTMSAKRSDGSQTNSIRKMRVDSNTAW-RAALKRAGIENFRFHDLRHTWASWLIQS 294

Query: 301 GATAHELMATYGWKTVDQAETYTKGAD 327
           G     L    GW++V+    Y   A 
Sbjct: 295 GVPLSVLQEMGGWESVEMVRRYAHLAS 321


>gi|196250966|ref|ZP_03149649.1| integrase family protein [Geobacillus sp. G11MC16]
 gi|196209530|gb|EDY04306.1| integrase family protein [Geobacillus sp. G11MC16]
          Length = 304

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 43/290 (14%), Positives = 88/290 (30%), Gaps = 39/290 (13%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----KHT 129
           ++ EY         + N+ IS+ +  +Q ++         +T+  IR  ++      +  
Sbjct: 1   MLHEYETYLQEKGFSPNTVISYLNDVNQFLKDLHLRPGDYVTSADIRKWIQQMLNPVEGK 60

Query: 130 P---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP---WTKEDMQQFK 183
           P   S+  + L S+R  + WAV    +  NP   ++  K   E        T+E+ +   
Sbjct: 61  PLAISTINRRLNSLRSFYAWAVEHYKLEQNPMKDIQDLKSADEDNEKIMWLTEEEFEDLL 120

Query: 184 SF-------------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
                            +  + R     L Y+GLR  +     +  L   +  I+    G
Sbjct: 121 HRMRKKPVQSRGVDPEEKYRRDRAVVYLLTYAGLRVEELSNLKLTDLDLEMKRIRIVGKG 180

Query: 231 TII-TVELPDGF-----------MKLLAMTP--IGKETFFINNDKQKMNATQFSIWFKAK 276
             + TV + +              ++    P        F +    K +        ++ 
Sbjct: 181 MKVRTVPISNILLAELEDWLKFRAEMAKKKPHVAESPYVFYSQRSPKFSVRGIQRMIESY 240

Query: 277 ATKAGVNKSAHGVRKFSATISADA-GATAHELMATYGWKTVDQAETYTKG 325
           +       + H  R         A      ++    G   +     Y K 
Sbjct: 241 SLP-NKKLTPHMFRHTFCKWMLKATNNDIEKVRRLAGHSNIATTSRYLKD 289


>gi|154250813|ref|YP_001411637.1| integrase family protein [Parvibaculum lavamentivorans DS-1]
 gi|154154763|gb|ABS61980.1| integrase family protein [Parvibaculum lavamentivorans DS-1]
          Length = 389

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 52/357 (14%), Positives = 99/357 (27%), Gaps = 45/357 (12%)

Query: 10  FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
            V      HG+       G    I L          A  +A      +   +      P 
Sbjct: 37  GVKSFVVVHGRNRKRTTIGRYPTISLQ--------DARKAAKQILAER--TLGKHEAPPI 86

Query: 70  TLKWLISEYRKSAHWGS--LAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR 126
             +  +  +   AH+        +R   +   +   +          I  + I   ++  
Sbjct: 87  DFEAGLKLFLA-AHFPENYPKPRTRAETKRQLEKHFLPSLRHEKLEHIQAREISRIIDKM 145

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             TP  A      +R+ F WA R+ YV  +PC  ++ PK+     R  T+++++      
Sbjct: 146 HKTPGEARHAFAVIRLFFNWAFRRGYVDRSPCERLQAPKQSLPRDRVLTQDEIRTVLGHA 205

Query: 187 SEG-SQPRLAFEFLLYSGLRCSDSCRAG--VQHLQNNIFSI--KTQKTGTIITVELPDGF 241
            E  +      + LL +G R  +            +   ++     K          +  
Sbjct: 206 RERDTTFNSIVQLLLLTGQRRGEIASLQADWIDFDSRTITLPATVTKNKRQHAFPFGEMA 265

Query: 242 MKLLAMT----------------PIGKETFFINNDKQKMNATQFSI---WFKAKATKAGV 282
             +L                      K         +      +S     F         
Sbjct: 266 EVILKRALLQAQQSREERREYEDADEKALLLFPARGKHTAFDGWSKGKPNFDKGCPID-- 323

Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET---YTKGA--DRIRLGIK 334
           + + H +R+  AT  A  G   H         +   +     Y + A  D +R  I+
Sbjct: 324 HWTLHDLRRTCATNLAALGVPVHVTEKLLNHISGTTSGIVAVYQRHAYMDEMRDAIE 380


>gi|158320318|ref|YP_001512825.1| integrase family protein [Alkaliphilus oremlandii OhILAs]
 gi|158140517|gb|ABW18829.1| integrase family protein [Alkaliphilus oremlandii OhILAs]
          Length = 380

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 54/357 (15%), Positives = 108/357 (30%), Gaps = 47/357 (13%)

Query: 15  RTRHGKIIYYFRKG--HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT-- 70
           R R     YY+  G   G+R ++      T   A  +     T        P+K      
Sbjct: 6   RKRGSSWYYYYDAGSVDGKRNKIERKGGKTKKEALNALNEALTKLGSGYVEPKKITVHEY 65

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
           +   +  Y K     +     +  +  +    I   G  + + I    +  G + +  + 
Sbjct: 66  MTDWVENYIKENRKLNTYNRYKEIYNRHLKPYIGHLGLSEVKPIHLDQMLLGEKKKGLSG 125

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           S+      ++   F  AV+ + +  NP   ++RPKR          E++ Q         
Sbjct: 126 STLQNIYGTLNSAFNRAVKLQIMYDNPLRFIDRPKRDKFVASTLAVEEIGQLFDALDTSK 185

Query: 191 Q----PRLAFEFLLYSGLRCSDSCRAGVQHLQNN---------------IFSIKTQKTGT 231
                  L  + +L  GLR  +      +++  N                 S+ T KT  
Sbjct: 186 YNDYIMSLGLKIVLELGLRRGELAGLEWKYIDFNKQIITIANNLVDTYTEVSLTTPKTDE 245

Query: 232 IITVELPDGFMKLLAMTPI---------------------GKETFFINNDKQKMNATQFS 270
              + +  G M+LL    +                       +      D   ++   ++
Sbjct: 246 RRDLYVSKGLMQLLKQHKVLQTKNRMKYRPHYKENEFNGNVCDFVMTWEDGTYVHPNYYT 305

Query: 271 IWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
           + F     K   ++    H +R  +AT+    G     +    G   ++     Y+ 
Sbjct: 306 VKFNKLLKKVNFDRNIRFHDLRHTNATLLLQQGIDFKVIQTRLGHSDINTTLNIYSH 362


>gi|168790523|ref|ZP_02815530.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC869]
 gi|189370021|gb|EDU88437.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC869]
          Length = 372

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 56/354 (15%), Positives = 105/354 (29%), Gaps = 57/354 (16%)

Query: 16  TRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKR---------EYINSPRK 66
            R+ K+ + +R     +       +        +       ++         E I S   
Sbjct: 20  KRNNKVYWRYRHPITGKNHGLGSIDQKLAETIAAEANSRLARQQMEQMLSLQEKIISDTG 79

Query: 67  KPTTLKWLISEYRKS----AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122
             +T+   ++ YRK        G + +N+     +       + G      IT K + S 
Sbjct: 80  GSSTVTIFLNNYRKIQQERYENGEIKLNTLKQKAAPLRVFDERFGTRPLDAITVKDVVSV 139

Query: 123 VESRKHTPSSAIQ--FLTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPWTKED 178
           +E  K    + +   F   +  +F+ A +   V    NP  S ++P+ +    R    E 
Sbjct: 140 LEEYKARGHNRMGQIFRKVLIDVFREAQQTGDVPPGFNPAESAKKPQVRISRQRLTFDEW 199

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE-- 236
           M  + +   +G   +      L +G R SD C+     +++    ++ QKTGT I +   
Sbjct: 200 MMIYNAAEKDGYFLQRGMLLALMTGQRLSDICKMQFSDIRDGYLHVEQQKTGTRIAIPLA 259

Query: 237 ---------------------LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKA 275
                                L    +         K           +     ++ FK 
Sbjct: 260 LRCDKLNLTLDDVVSSCRDCVLSPWLLHHHHAKGTAK-------RGGMVKPATLTVAFKK 312

Query: 276 KA-------TKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
                       G   S H  R  S  +  + G     L    G       + Y
Sbjct: 313 ARDSVDYNWRANGTPPSFHEQRSLSERLFREQGVDTKIL---LGHSNQKMTDIY 363


>gi|225156559|ref|ZP_03724893.1| Site-specific recombinase XerD-like protein [Opitutaceae bacterium
           TAV2]
 gi|224802887|gb|EEG21135.1| Site-specific recombinase XerD-like protein [Opitutaceae bacterium
           TAV2]
          Length = 448

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 51/345 (14%), Positives = 104/345 (30%), Gaps = 38/345 (11%)

Query: 14  ERTRHGK--IIY--YFRKGHGR---RIRLPYPHESTFIPAYMSALTGSTPKREYINSPR- 65
           +R + GK  +++   +R   G+    + L    ++         +  +  +   +  PR 
Sbjct: 7   QRVQKGKKSVLWSGRYRIEKGQPYKEVALGLTDKAAARAKLQQIVIEAQREAVGLLPPRR 66

Query: 66  ---KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122
                   L  L+ E+          V           +I+  +       IT +   + 
Sbjct: 67  LRDAAAAPLGKLLGEFHADLLGQKRTVPYARVVCYRIREIVTVTKWCHLSDITPESFMAW 126

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP---WTKEDM 179
                    +  ++  ++     W VR + +  NP   V RP  + + +RP   +T +++
Sbjct: 127 RAQTDMAAKTLKEYQAAVNAFLNWLVRSDRIERNPLAKVRRPDTRGKAVRPSRSFTLDEL 186

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIIT 234
               +     S  R+AF  L Y+G R  +                 +    + K      
Sbjct: 187 AALFAAAKSTSH-RIAFMLLAYTGQRVKEIRLLVWGDFTFGAKPFVLIRETSTKDRKKRP 245

Query: 235 VELPDGFMKLL----AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS----- 285
           + L    +  +           +  F  ++         + +       AG+ K+     
Sbjct: 246 IPLHPRLVAEIEAFRPADARPDQRVFPADENFPKWEDSVAAF-----KAAGIKKTDDLGR 300

Query: 286 ---AHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGA 326
               H +RK   T+   AG          G       A  YT  A
Sbjct: 301 TLHLHALRKTFQTLGVKAGVNQRAAQELLGHTDPRLTAGVYTDVA 345


>gi|211906283|gb|ACJ11659.1| integrase [Candidatus Hamiltonella defensa]
          Length = 357

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 47/293 (16%), Positives = 101/293 (34%), Gaps = 34/293 (11%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE-----SRKHTPSSAIQFLTS 139
             L   +     S   ++  +     ++       R G+E     +++ + ++  + L  
Sbjct: 60  TRLKDITEAKIYSAISKMKNRQEQLRWKSRVNSAKRKGIEIPAYQAKEVSIATKAKHLAL 119

Query: 140 MRVLFKWA-VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEF 198
           ++ + + A    +++  +P   ++ P  + + IR    ++ ++  +   E    R   EF
Sbjct: 120 LKSMMRSAERDWKWIEKSPV--IKVPSAREKRIRWLEPDEAERLINECPEPL--RSTVEF 175

Query: 199 LLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254
            L +GLR S+        +           +  K+G  I V L D   + L       + 
Sbjct: 176 ALATGLRRSNIINLAWSQIDMQRKVAWIEPENSKSGKAIGVALNDTACRTLTRQLGNHQK 235

Query: 255 FFI-------------NNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADA 300
           +                N  +KM     + W +A   +AG+ N   H +R   A+    +
Sbjct: 236 WVFVHTMSAKRSDGSQTNSIRKMRVDSNTAW-RAALKRAGIENFRFHDLRHTWASWLIQS 294

Query: 301 GATAHELMATYGWKTVDQAETYTKGADR-----IRLGIKNSRRISSVVDSDDP 348
           G     L    GW++V+    Y   A        +       R +  + +  P
Sbjct: 295 GVPLSVLQEMGGWESVEMVRRYAHLASNHLTEHAKQIDGVFDRFNRKISNHVP 347


>gi|27365771|ref|NP_761299.1| Integrase [Vibrio vulnificus CMCP6]
 gi|27361920|gb|AAO10826.1| Integrase [Vibrio vulnificus CMCP6]
          Length = 402

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 50/352 (14%), Positives = 103/352 (29%), Gaps = 47/352 (13%)

Query: 20  KIIYYFRKGHGRRIRLPYPH---ESTFIPAYMSALTGSTPKREYINSPRKKPT------- 69
           K   Y+R    +R  L                    G     E +   R +         
Sbjct: 41  KYYLYYRIHGKQRNFLLGSANALTPAQARDLAKEKAGQVAAGEDVQVTRHEAKKREQRNS 100

Query: 70  -TLKWLISEYRKSAHWGSLAVNS-RISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR- 126
            TL   + E+  SA+  S+   + + S         +        +IT   I+  V  R 
Sbjct: 101 LTLSKFLEEHY-SAYLMSINEKTAQKSLMCIQSNF-KHLSTKPLVEITAWDIQQWVAERS 158

Query: 127 --KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
                P++       +R +F  AV   ++  +   +V+ P+   + IR  +  +      
Sbjct: 159 KAGRAPATISYAYNRLRAVFNRAVEWGFIDSHSLDNVKIPRIDNKRIRYLSVSEEAALLE 218

Query: 185 FWSEGSQ--------------PRLA-----------FEFLLYSGLRCSDSCRAGVQHL-- 217
                                 RL                L +G+R  +       H+  
Sbjct: 219 SLKARDARLKDEALQRYGKRAQRLVSQRYVDFLEPLIVLALNTGMRKGEMLSLKWSHINM 278

Query: 218 QNNIFSIKTQ--KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKA 275
           ++   +I+++  K+    T+ L +    +L           +  ++       +   +++
Sbjct: 279 EDRYLTIRSENAKSKNKRTIPLNNTVYTMLQAWHEQNPDTELVFERNGKPLDSYQYQWES 338

Query: 276 KATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
               AG+ N   H +R   A+      A  + +    G   +     Y   A
Sbjct: 339 LLKDAGIENFRFHDLRHHFASKLVMKEADLNVVRELLGHADLKMTLRYAHLA 390


>gi|297539515|ref|YP_003675284.1| integrase family protein [Methylotenera sp. 301]
 gi|297258862|gb|ADI30707.1| integrase family protein [Methylotenera sp. 301]
          Length = 353

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 33/206 (16%), Positives = 70/206 (33%), Gaps = 8/206 (3%)

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
            R +  ++  + L   R + + A  + +++   P   +     + E  R    ++  +  
Sbjct: 119 KRGNKIATINRHLAVTRAILRMARDEWQWIDSVP--KIRLLSGEVERDRWLNHDEADRLI 176

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGF 241
           +         + F     +G R S+        +        +   K GT   + L    
Sbjct: 177 AECPPHLAAMVRFALT--TGCRASEITGLEWNRVDLERRTAWLDKTKNGTPRGIPLNHDA 234

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADA 300
           +K+LA        +      + +     +  + A   + G+ +   H +R   A+    A
Sbjct: 235 IKVLAALKGNHPRYCFTFRGEPIKRAITNHAWYAAVERVGLGDFRFHDLRHTWASWHRQA 294

Query: 301 GATAHELMATYGWKTVDQAETYTKGA 326
           G +  EL    GWK+    + Y K A
Sbjct: 295 GTSCDELKELGGWKSRSMVDRYAKFA 320


>gi|270157694|ref|ZP_06186351.1| phage integrase family protein [Legionella longbeachae D-4968]
 gi|269989719|gb|EEZ95973.1| phage integrase family protein [Legionella longbeachae D-4968]
          Length = 408

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 55/305 (18%), Positives = 107/305 (35%), Gaps = 22/305 (7%)

Query: 41  STFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD 100
             F   +    +GS P+        K    LK LI ++    ++           +   D
Sbjct: 67  KAFNDLWEIRQSGSDPEEIIQQRLLKNNNNLKTLICDWYN--NYIVKHRKQPRQIKQQID 124

Query: 101 Q-IIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINP 157
             II   G F+  KI  + I   +++  ++ +P  A + L++++  F +AV +  +A NP
Sbjct: 125 ADIIPLLGAFEIEKIQARDISKALDNIVQRGSPVHANKVLSTLKQAFNYAVSRGEIATNP 184

Query: 158 CLSV---ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ-----PRLAFEFLLYSGLRCSDS 209
            + +   +    +    R  T E+++    F   G+       + A + +L +G R  + 
Sbjct: 185 AMHIRARDIGGLEKPRDRNLTLEEIKTLWLFLDNGNHSMSIQIKNAIKIILLTGARTGEL 244

Query: 210 CRAGVQHLQ-NNIFSIKTQ---KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ--- 262
             A            +      K G  + + L D   KLL        + ++        
Sbjct: 245 RLAKWSEFNFEKSLWVIPSENNKIGLSMKIHLCDLAKKLLLEIKDISLSDYVLAGASDDE 304

Query: 263 KMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADA-GATAHELMATYGWKTVDQAE 320
            +         +    + G+   +AH +R+  AT   +  G     +    G K      
Sbjct: 305 PLTDKAIPKAVQRIQERVGIPQWTAHDLRRTFATQLGETLGINPVVIEKCLGHKMPKIMA 364

Query: 321 TYTKG 325
           TY K 
Sbjct: 365 TYNKD 369


>gi|291457638|ref|ZP_06597028.1| phage integrase [Bifidobacterium breve DSM 20213]
 gi|291380691|gb|EFE88209.1| phage integrase [Bifidobacterium breve DSM 20213]
          Length = 376

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 55/338 (16%), Positives = 105/338 (31%), Gaps = 40/338 (11%)

Query: 16  TRHGKII-YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           T+ GK     +RK  G               A+ +A   +         P+     ++ L
Sbjct: 10  TKSGKRYEVRYRKPDGTPTGKRGFRRKMDADAWGAANVTTAKSVGAYIDPQAGRRLVEDL 69

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
              +  +    +   +   + E  +   +  K G  + + IT   ++  V +   +  SA
Sbjct: 70  WEPWLAAKKTKA-KPSYIETLERAWRVHVAPKWGMREVQSITHDEVQMWVSALAES-KSA 127

Query: 134 IQFLTS---MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
              L +   +R L   A   + +  NPC  +E P+++ +     +   + Q  +      
Sbjct: 128 SVVLRAEGILRALLAKAKADKCIHDNPCDGLELPRKRRKKHVYLS---IDQLLALADASD 184

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ---------------KTGTIITV 235
             R     L   GLR  +     V  +  +   I  +               KTG   TV
Sbjct: 185 WRRPIVLTLGLCGLRWGELVGLQVGDVDLDRQRIHVRRSATEVNHQIVVDAPKTGEERTV 244

Query: 236 ELPDGFMKLLAMTPIGKE------------TFFINNDKQKMNATQFSIWFKAKATKAGVN 283
             P      L     G+             ++          ++ F  W K ++    + 
Sbjct: 245 IFPRMLQSCLEEACDGRRQSDLLFPDRRTGSYLRKTHGPCSTSSWF-YWAKKRSLGDEIA 303

Query: 284 KS--AHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
            S   H +R   A++   AGA    +    G K+    
Sbjct: 304 DSMTIHDLRHTCASLLVHAGANVKAVQRQLGHKSATMT 341


>gi|4099030|gb|AAD10295.1| integrase [Shigella phage SfX]
          Length = 386

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/211 (17%), Positives = 74/211 (35%), Gaps = 21/211 (9%)

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
            +  + L  +R +   AV   ++   P   +  P+ K   IR  T+E+ ++  +  +   
Sbjct: 144 GTKTRHLAILRAILNMAVEWGWLDRAP--KISTPRVKNGRIRWLTEEESKRLFAEIAPHF 201

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGFMKLLA 246
            P + F     +GLR S+        +  +           K G  I V L +   ++L 
Sbjct: 202 FPVVMFAIT--TGLRRSNVTDLEWSQVDLDKKMAWMHPDETKAGNAIGVPLNETACQILR 259

Query: 247 MTPIGKETFFINNDKQKMNATQFS------------IWFKAKATKAGV-NKSAHGVRKFS 293
                 + +   + K    +                  +K    +AG+ N   H +R   
Sbjct: 260 KQQGLHKRWVFVHTKPAYRSDGTKTAAVRKMRTDSNKAWKGALKRAGISNFRFHDLRHTW 319

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324
           A+    +G +   L    GW+T++  + Y  
Sbjct: 320 ASWLVQSGVSLLALKEMGGWETLEMVQRYAH 350


>gi|307564494|ref|ZP_07627035.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
 gi|307346854|gb|EFN92150.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
          Length = 409

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/210 (18%), Positives = 65/210 (30%), Gaps = 20/210 (9%)

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ-----QF 182
            T  +A   L ++    + A R+    +      +  K      +   +   +     QF
Sbjct: 183 STFYNAATHLKTV---CRLAYREGLADVLLFDKAKISKGDKRLPKALDRGAFEKLKTLQF 239

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVEL 237
           +    E    R  F F  Y+G    D       HL  +           QKTG    V+L
Sbjct: 240 EDLEEEMETARDIFLFACYTGAAYCDLMELNKSHLVRDDEGCLWLKFNRQKTGVPCRVKL 299

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSAT 295
               ++L+      +    +      M    +  + KA   +AG+    + H  R   AT
Sbjct: 300 LPEAIRLMEKLHSDERETLL----PFMGYATYQSYLKALRLRAGISFPFTTHTARHTFAT 355

Query: 296 IS-ADAGATAHELMATYGWKTVDQAETYTK 324
               + G     +    G   V   E Y K
Sbjct: 356 FITLEQGVPIETVSKMLGHSNVSMTERYAK 385


>gi|297581963|ref|ZP_06943883.1| site-specific recombinase XerD [Vibrio cholerae RC385]
 gi|297533830|gb|EFH72671.1| site-specific recombinase XerD [Vibrio cholerae RC385]
          Length = 389

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 44/266 (16%), Positives = 83/266 (31%), Gaps = 19/266 (7%)

Query: 93  ISFESYFDQIIRKSGDFDYRKIT--TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQ 150
             +  + +    +   +         +H          + ++A  +   +R     A R 
Sbjct: 125 HRYHHHAELTFEQVDKYFLEGFRHYLQHEAITKSDTGLSRNTACSYFNKIRAALNQAQRD 184

Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210
             +  NP   V+  K +       T ++++            R AF F   +GLR SD  
Sbjct: 185 RIIKDNPVEQVKSIKAERTQRTYLTLDEVKALTKAECRYDVLRRAFLFSCTTGLRWSDIH 244

Query: 211 RAGVQHLQN-----NIFSIKTQK----TGTIITVELPDGFMKLLAMTPIGKETFFINNDK 261
           +     ++              K       +  ++LPD  ++LL +   GK T       
Sbjct: 245 KLVWSEIELFAQGHYRIIFSQIKLKNSGNGLQYLDLPDSAVRLLNLENRGKPT---ERVF 301

Query: 262 QKMNATQFSI-WFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           + +    +S       A +AG+ K  + H  R   A      G   + L    G   +  
Sbjct: 302 KGLRYDSYSNVALVQWAIRAGITKHVTFHAGRHTFAVNQLARGLDIYSLSRLLGHSELRT 361

Query: 319 AETYTKGADRIRLGIKNSRRISSVVD 344
            E Y    +  R   +  R    + D
Sbjct: 362 TEIYADILETRR--TEAMRTFPDIFD 385


>gi|291530765|emb|CBK96350.1| Site-specific recombinase XerD [Eubacterium siraeum 70/3]
          Length = 357

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 49/280 (17%), Positives = 97/280 (34%), Gaps = 36/280 (12%)

Query: 105 KSGDFDYRKITTKHIRSGVE-------SRKHTPSSAIQFLTSMRVLFKWAVRQE-YVAIN 156
           K  D D + I    +   +E        R +   +  +   S+R  +K+    + + A +
Sbjct: 67  KISDLDDKYIKAVTLTDAMEFLSFTVSERSNQAKARSRKAVSLRQFYKFLTNNKAWFAAS 126

Query: 157 PCLSVERPKRKTEGIRPWTKEDMQQFKSF-WSEGS-----QPRLAFEFLLYSGLRCSDSC 210
           P L++E P  K    +  T ++  Q     + E S     +        L  G+R S+  
Sbjct: 127 PMLNLELPSPKNALPKHLTLQECGQLLHEGFKEFSSWMDYRDYAMIIMFLNCGMRLSELV 186

Query: 211 RAGVQHLQNNI---------FSIKT-QKTGTIITVELPDGFMKLL--------AMTPIGK 252
              V     NI          S+K   K      V L +  +  +        ++    +
Sbjct: 187 GINVNDFVENIDPSQPDVKYLSVKVLGKGNKERIVYLNEQCVDAVTKYTEARKSVADPKE 246

Query: 253 ETFFINNDKQKMNATQFSIWFKAK---ATKAGVNKSAHGVRKFSATISADAGATAHELMA 309
           +  FI+    ++   +       +      AG   S H +R  +AT+    G     L  
Sbjct: 247 KALFISKRGNRITNRRVEQIIDDRLKACGLAGKGISVHKLRHTAATLMYQNGVDVRVLKE 306

Query: 310 TYGWKTVDQAETYTKGAD-RIRLGIKNSRRISSVVDSDDP 348
             G + ++  + YT   + ++R  I ++  +    D  +P
Sbjct: 307 VLGHENLNTTQIYTHVVNTQLRDAINSNPVMDIKNDLPEP 346


>gi|289650500|ref|ZP_06481843.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. aesculi str. 2250]
          Length = 279

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 49/246 (19%), Positives = 94/246 (38%), Gaps = 32/246 (13%)

Query: 84  WGSLA-VNSRISFESYFDQIIRKSGDF---DYRKITTKHI---RSGVESRKHTPSSAIQF 136
           + +L    +R ++++         G     D+R++T  H+   R+ +E R    ++  + 
Sbjct: 34  FANLDNPRTRRAYQNDLTDFSAFIGLASADDFRQVTRSHVLAWRANLEQRGLAGATIRRK 93

Query: 137 LTSMRVLFKWAVRQE-YVAINPCLSVERPKRKT-EGIRPWTKED-----MQQFKSFWSEG 189
           L ++  LF   +        NP   V+RPK ++ EG  P   +      ++       +G
Sbjct: 94  LAALASLFDHLLESNAIAGGNPVHGVKRPKIESNEGKTPALGDHQAKALLEAPDESTLKG 153

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKT-QKTGTIITVELPDG------ 240
            + R     LLY GLR  ++ +  V  +  +  I  +K   K G +  + L         
Sbjct: 154 LRDRAMLAVLLYHGLRREEAAQLQVSDIQERRGIQHLKIHGKGGKVRYLPLHPVAAGRIH 213

Query: 241 --FMKLLAMTPIGKETFFINNDKQ----KMNATQFSIWFKAKATKAGV---NKSAHGVRK 291
               +        K   FI+   +     ++A       +A   KAG+       HG+R 
Sbjct: 214 WYLERSGHHLGDKKVPLFISLRGKSTGASISANGIYTVVEAYTKKAGIEVAGLGVHGLRA 273

Query: 292 FSATIS 297
            +AT +
Sbjct: 274 TAATNA 279


>gi|266619164|ref|ZP_06112099.1| site-specific recombinase, phage integrase family [Clostridium
           hathewayi DSM 13479]
 gi|288869310|gb|EFD01609.1| site-specific recombinase, phage integrase family [Clostridium
           hathewayi DSM 13479]
          Length = 402

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 54/372 (14%), Positives = 109/372 (29%), Gaps = 71/372 (19%)

Query: 17  RHGKIIYYFRK--GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           R G + Y  R     G+++ L             +A             P       KWL
Sbjct: 16  RKGILYYRTRIQDADGKQVSLYATTCEELYEKQQAAKKQVEEIVFRRKHPTVAEYCEKWL 75

Query: 75  ISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           + +   SA    ++  +  ++ S   + II+  GD    ++T   IR  +    +     
Sbjct: 76  LMQ---SAK---VSSATMKAYTSDMRNYIIKPLGDMYMEEVTADDIRLALVPLTNKSEGL 129

Query: 134 IQFLTSMRVLFKW-AVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
              +  +     + A R E +  NPC+ +  +  + T+     T + ++        G  
Sbjct: 130 YNTVNMLIKCIFYSAERSELITYNPCVGISAKGGKPTKKKDALTDQQVEVLLDTVK-GLP 188

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNI----FSIKTQ--------------KTG-TI 232
           P L     LYSGLR  ++       +  +      S++                KT    
Sbjct: 189 PYLFIMICLYSGLRREEALGLHWDCVFLDAPTPYISVRRAWRSEHNRPVVSTVLKTPAAK 248

Query: 233 ITVELPDGFMKLLAMTPIG--KETFFINNDKQKMNATQFSIWFKAKATK----------- 279
             + +P   +  L         +    ++  + +  +QF   ++    +           
Sbjct: 249 RDIPIPKCLVDCLREAKENSISDYVIADSKGEPLAYSQFQRVWQYVVVRSTKPRNYYKYV 308

Query: 280 ------------AGV--------------NKSAHGVRKFSATISADAGATAHELMATYGW 313
                        G+              + + H +R    T    AG     +    G 
Sbjct: 309 NGESIKYTVTPTLGMTQKNQPKIKYTIDFDVTPHQLRHTYITNLLYAGVNPKTVQYLAGH 368

Query: 314 KTVDQA-ETYTK 324
           +      + Y K
Sbjct: 369 ENSKTTMDIYAK 380


>gi|225626413|ref|ZP_03784452.1| tyrosine recombinase XerD [Brucella ceti str. Cudo]
 gi|261221082|ref|ZP_05935363.1| tyrosine recombinase xerD [Brucella ceti B1/94]
 gi|261314935|ref|ZP_05954132.1| tyrosine recombinase xerD [Brucella pinnipedialis M163/99/10]
 gi|261316509|ref|ZP_05955706.1| tyrosine recombinase xerD [Brucella pinnipedialis B2/94]
 gi|261323973|ref|ZP_05963170.1| tyrosine recombinase xerD [Brucella neotomae 5K33]
 gi|261751173|ref|ZP_05994882.1| tyrosine recombinase xerD [Brucella suis bv. 5 str. 513]
 gi|261758967|ref|ZP_06002676.1| tyrosine recombinase xerD [Brucella sp. F5/99]
 gi|265987583|ref|ZP_06100140.1| tyrosine recombinase xerD [Brucella pinnipedialis M292/94/1]
 gi|265997042|ref|ZP_06109599.1| tyrosine recombinase xerD [Brucella ceti M490/95/1]
 gi|294851262|ref|ZP_06791935.1| tyrosine recombinase XerD [Brucella sp. NVSL 07-0026]
 gi|225618070|gb|EEH15113.1| tyrosine recombinase XerD [Brucella ceti str. Cudo]
 gi|260919666|gb|EEX86319.1| tyrosine recombinase xerD [Brucella ceti B1/94]
 gi|261295732|gb|EEX99228.1| tyrosine recombinase xerD [Brucella pinnipedialis B2/94]
 gi|261299953|gb|EEY03450.1| tyrosine recombinase xerD [Brucella neotomae 5K33]
 gi|261303961|gb|EEY07458.1| tyrosine recombinase xerD [Brucella pinnipedialis M163/99/10]
 gi|261738951|gb|EEY26947.1| tyrosine recombinase xerD [Brucella sp. F5/99]
 gi|261740926|gb|EEY28852.1| tyrosine recombinase xerD [Brucella suis bv. 5 str. 513]
 gi|262551510|gb|EEZ07500.1| tyrosine recombinase xerD [Brucella ceti M490/95/1]
 gi|264659780|gb|EEZ30041.1| tyrosine recombinase xerD [Brucella pinnipedialis M292/94/1]
 gi|294819851|gb|EFG36850.1| tyrosine recombinase XerD [Brucella sp. NVSL 07-0026]
          Length = 309

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 43/272 (15%), Positives = 93/272 (34%), Gaps = 32/272 (11%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHT---PSSAIQFLTS 139
              A N+  S+    +    +      +  +  T HIR  +++       P+S  + L++
Sbjct: 20  RGAAQNTLESYRRDLEAAAEELAAKGVNLAEAETGHIRMTLDTMAAQGFAPTSQARRLSA 79

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS------------ 187
           +R  F++   + +   +P   ++ PK++    +  + E++ +     +            
Sbjct: 80  LRQFFRFLYSEGFRQDDPTGILDAPKKQKPLPKIMSVENVGKLLDRAALEANEAAEPGER 139

Query: 188 -EGSQPRLAFEFLLYSGLRCSDSCRAGVQ-HLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
            +  +     E L  +GLR S+     V     ++ F +   K      V L       L
Sbjct: 140 IKALRLHALLETLYATGLRVSELVGLPVTVARTDHRFLLVRGKGSKDRMVPLSRKARDAL 199

Query: 246 AM-------TPIGKETFFIN---NDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKF 292
                     P   +  ++    ++   +    F+   K  A +AG+     S H +R  
Sbjct: 200 QKFLTLRDSLPGSDDNPWLFPAFSESGHLARQVFARELKGLAARAGLAASSVSPHVLRHA 259

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324
            A+     GA    +    G   +   + YT 
Sbjct: 260 FASHLLQNGADLRTVQQLLGHADISTTQIYTH 291


>gi|198284453|ref|YP_002220774.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218667286|ref|YP_002427120.1| tyrosine recombinase XerC [Acidithiobacillus ferrooxidans ATCC
           23270]
 gi|198248974|gb|ACH84567.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218519499|gb|ACK80085.1| tyrosine recombinase XerC [Acidithiobacillus ferrooxidans ATCC
           23270]
          Length = 314

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/266 (13%), Positives = 82/266 (30%), Gaps = 26/266 (9%)

Query: 85  GSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLT 138
           G ++  +  ++        R   + G  +  ++    +R+ +    SR  +  S  +   
Sbjct: 18  GRVSPATISAYSRDLHAWARFALQRGQTEIAQMDRGSLRAYLLAERSRGVSVRSLRRHFA 77

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE---------- 188
           ++R L++   +      NP   +  P+ +       T +  +                  
Sbjct: 78  ALRALYRHLQQDAPELRNPVSGLAMPRAEQRLPDWLTVDQARLLMQPAISDTEAAPQDFT 137

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKL--- 244
           G + +L  E L  S LR S+     +  L  +  +++   K      V +          
Sbjct: 138 GLRDQLILELLYSSALRVSELAGLNLGDLDPHAGTVRVLGKGRKERIVPVGQPAWAALRA 197

Query: 245 -----LAMTPIGKETFFINNDKQKMNATQFSIWFKAKA-TKAGVNKSAHGVRKFSATISA 298
                 A+    +   F+N   Q++      +  K     + G     H +R  +A+   
Sbjct: 198 YLAARPAVAASDEPALFVNRRGQRLTVRSIQVRVKKLGDARLGQPLHPHTLRHSAASHLL 257

Query: 299 DAGATAHELMATYGWKTVDQAETYTK 324
            +      +    G   +     YT 
Sbjct: 258 QSSGDLRAVQEYLGHAGIGTTAIYTH 283


>gi|167749654|ref|ZP_02421781.1| hypothetical protein EUBSIR_00612 [Eubacterium siraeum DSM 15702]
 gi|167657407|gb|EDS01537.1| hypothetical protein EUBSIR_00612 [Eubacterium siraeum DSM 15702]
          Length = 357

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 49/280 (17%), Positives = 97/280 (34%), Gaps = 36/280 (12%)

Query: 105 KSGDFDYRKITTKHIRSGVE-------SRKHTPSSAIQFLTSMRVLFKWAVRQE-YVAIN 156
           K  D D + I    +   +E        R +   +  +   S+R  +K+    + + A +
Sbjct: 67  KISDLDDKYIKAVTLTDAMEFLSFTVSERSNQAKARSRKAVSLRQFYKFLTNNKAWFAAS 126

Query: 157 PCLSVERPKRKTEGIRPWTKEDMQQFKSF-WSEGS-----QPRLAFEFLLYSGLRCSDSC 210
           P L++E P  K    +  T ++  Q     + E S     +        L  G+R S+  
Sbjct: 127 PMLNLELPSPKNALPKHLTLQECGQLLHEGFKEFSSWMDYRDYAMIIMFLNCGMRLSELV 186

Query: 211 RAGVQHLQNNI---------FSIKT-QKTGTIITVELPDGFMKLL--------AMTPIGK 252
              V     NI          S+K   K      V L +  +  +        ++    +
Sbjct: 187 GINVNDFVENIDPSQPCVKYLSVKVLGKGNKERIVYLNEQCVDAVTKYTEARKSVADPKE 246

Query: 253 ETFFINNDKQKMNATQFSIWFKAK---ATKAGVNKSAHGVRKFSATISADAGATAHELMA 309
           +  FI+    ++   +       +      AG   S H +R  +AT+    G     L  
Sbjct: 247 KALFISKRGNRITNRRVEQIIDDRLKACGLAGKGISVHKLRHTAATLMYQNGVDVRVLKE 306

Query: 310 TYGWKTVDQAETYTKGAD-RIRLGIKNSRRISSVVDSDDP 348
             G + ++  + YT   + ++R  I ++  +    D  +P
Sbjct: 307 VLGHENLNTTQIYTHVVNTQLRDAINSNPVMDIKNDLPEP 346


>gi|32472856|ref|NP_865850.1| integrase [Rhodopirellula baltica SH 1]
 gi|32444093|emb|CAD73535.1| integrase [Rhodopirellula baltica SH 1]
          Length = 436

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 43/296 (14%), Positives = 86/296 (29%), Gaps = 44/296 (14%)

Query: 64  PRKKPTTL--KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121
            +  P +   + L     +  H    A  +   +     Q+   +G     ++  +H+R 
Sbjct: 131 SQDAPGSHFPESLRLRLSEDLHLTGKAKRTHDGYIRAVRQLSDFAG-CSPDQVNEQHVRQ 189

Query: 122 GVESRKHTPSSAIQFLTS----MRVLFKWAVRQEYVAINPCLSVERPKRK--TEGIRPWT 175
                K+  + A   L      ++  F    ++++        ++  K +  T      T
Sbjct: 190 FFLHLKNDRNFAYGSLRVAFSGIKFFFTHTCKRDW------EIIKMLKLQNITTLPEVLT 243

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYS----GLRCSDSCRAGVQHLQ--NNIFSIKTQKT 229
              ++Q        +  R       ++    GLR +++    V  +        +   K 
Sbjct: 244 ---IEQVHELIGSATTQR--MFVYFWTVYSLGLRLNEALHLQVSDIDAERGWVHVHRGKG 298

Query: 230 GTIITVELPDGFMKLLAM--TPIGKETFFINNDKQ--------------KMNATQFSIWF 273
                V LP   ++LL          +F    D +               M+ T      
Sbjct: 299 AKDRYVPLPTTTVRLLRNYWASHRHPSFLFPADGRKHDLAKDGVSEATTPMSETAVQGAM 358

Query: 274 KAKATKA--GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           K        G   S H +R   AT   +AG     +    G  ++     Y    D
Sbjct: 359 KQITKNLRFGKKVSIHTLRHSYATHLLEAGVGLKVIQKYLGHSSLQTTMVYLHLTD 414


>gi|227537674|ref|ZP_03967723.1| phage integrase family protein [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227242288|gb|EEI92303.1| phage integrase family protein [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 416

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 59/318 (18%), Positives = 111/318 (34%), Gaps = 49/318 (15%)

Query: 47  YMSALTGSTP------KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISF---ES 97
           Y   +  S P      K  Y+    ++  T+  LI+ Y K      LA  +  ++   ES
Sbjct: 84  YNQLIQQSKPVSIEAVKALYLGEDIEERITILKLIT-YHKQVSEHKLAAGTIKNYHTTES 142

Query: 98  YFDQIIRKSGDFDYRKITTKHIRSGVESRK----------HTPSSAIQFLT---SMRVLF 144
           Y  + +++S   +   +   + R  ++             H P +    +     +R + 
Sbjct: 143 YIKKFLKESYKKNDLLLDELNFRFILDFESFLTNYKPIDHHKPLNNNGIMKHMERLRKMI 202

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL-----AFEFL 199
             A+  +++  +P    +    K E     +KE+++  ++     S  RL      F F 
Sbjct: 203 NLAITMDWLERDPFAKYKLRFEKVERGH-LSKEELEILEN--KTFSIERLQSVLDMFLFS 259

Query: 200 LYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVELPDGFMKLL-----AMTP 249
            Y+GL   D      +++            K QKT T++ V L      ++         
Sbjct: 260 CYTGLAYIDISNLSRENIMKGIDGKDWLMTKRQKTDTLVKVPLLYQASTIIKNYKEHPVA 319

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSAT-ISADAGATAHE 306
               T F     Q+MN      + K  A   G+  N + H  R   AT ++   G     
Sbjct: 320 KASGTIFPVISNQRMNG-----YLKEIADICGISKNLTFHLARHTFATTVTLSNGVPIES 374

Query: 307 LMATYGWKTVDQAETYTK 324
           +    G  ++   + Y K
Sbjct: 375 VSKMLGHTSIRTTQIYAK 392


>gi|189405329|ref|ZP_02814784.2| integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           EC869]
 gi|261258240|ref|ZP_05950773.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           FRIK966]
 gi|189370712|gb|EDU89128.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           EC869]
          Length = 333

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/311 (13%), Positives = 90/311 (28%), Gaps = 30/311 (9%)

Query: 30  GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAV 89
           G+RIR  +  +S  +      +           S  +    L  LI+ + +     +L+ 
Sbjct: 22  GKRIRKQFATKSEALSYERRLMNSRVGDEFQDGSGSR----LSELIARWFEMYG-KTLSS 76

Query: 90  NSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-----------KHTPSSAIQFLT 138
                 +   + I  + GD    +       +  E R           K + ++  +  +
Sbjct: 77  G--AERKVKLEAICSRLGDPFASQFDKNMFATYRERRLSGEWNPKGKKKLSEATVNREQS 134

Query: 139 SMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL--A 195
            +  +F    R   +   NP   + + + + + +     +++++      E     L   
Sbjct: 135 YLHAVFAELKRLGEWSGENPLTGIRKFREEEKELAFLYVDEIERLLIACDESRNKDLGVV 194

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF 255
               L +G R S++       +     +    K     TV +      +L   P  +   
Sbjct: 195 VRIGLATGARWSEAEGLKQSQVLPGRITFVKTKGKKNRTVPISPQLQAML---PKKRGAL 251

Query: 256 FINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKT 315
           F            F    K    +    +  H +R   A+     G     L    G   
Sbjct: 252 F------SPCYEAFDAAIKRAKIELPDGQLTHVLRHTFASHFMMRGGNILVLQKILGHSD 305

Query: 316 VDQAETYTKGA 326
           +     Y   A
Sbjct: 306 IKMTMRYAHFA 316


>gi|317506912|ref|ZP_07964684.1| phage integrase [Segniliparus rugosus ATCC BAA-974]
 gi|316254840|gb|EFV14138.1| phage integrase [Segniliparus rugosus ATCC BAA-974]
          Length = 395

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 60/375 (16%), Positives = 115/375 (30%), Gaps = 59/375 (15%)

Query: 24  YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKS-A 82
           Y     G+R R  +  ++    A    L  +  + +    P     ++K  ++ +R +  
Sbjct: 25  YLDPKTGQRKRTSFYADTA--KAAREKLKNARERLDKGAPPTDAKASVKEWMAHWRATTL 82

Query: 83  HWGSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVESRKHTP---------- 130
                  N+   +E      I   K G     K+   HI + +   K+            
Sbjct: 83  QASDRKANTIELYERLSIHHIETGKFGTLTLDKLKPSHIEALIVHLKNAGKAQTGDDGKK 142

Query: 131 -------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
                  S+     T +R     AVR   +A NP   V+RPK + +    +   D+ +  
Sbjct: 143 NLVGLAESTVRTTYTVLRSALDTAVRDGLLAENPATKVKRPKVERKEAVHFEAADLAKIL 202

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-----------------NNIFSIKT 226
                 S+       +  SG+R  ++       ++                      +  
Sbjct: 203 KAADS-SRYHTTLLLIAASGIRRGEAAGLRWSDVELKEQDGKFTVRKTAARIGGELVLTD 261

Query: 227 QKTG-TIITVELPDGFMKLLAMTP--------------IGKETFFINNDKQKMNATQFSI 271
            KT  +  T+ L  G +  L                        F       ++      
Sbjct: 262 PKTKTSRRTIPLSQGMVTALKAHRKRQLEERLRAGDQWKDNGMVFTTEFGTIVDPRNLLR 321

Query: 272 WFKAKATKAGVNKS-AHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRI 329
             KA A KAG+ K+  H VR  +A    ++G     +    G  ++    + Y   +D+ 
Sbjct: 322 VVKAAAKKAGIEKANVHAVRHSAAMAWLESGVHIKAVADLLGHSSIAITGDIYGHTSDQA 381

Query: 330 RLGIKNSRRISSVVD 344
                    +S+V+ 
Sbjct: 382 --ARSAVDGLSAVLG 394


>gi|309805011|ref|ZP_07699068.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 09V1-c]
 gi|329919942|ref|ZP_08276844.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners SPIN 1401G]
 gi|308165670|gb|EFO67896.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 09V1-c]
 gi|328936829|gb|EGG33265.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners SPIN 1401G]
          Length = 373

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 65/363 (17%), Positives = 121/363 (33%), Gaps = 36/363 (9%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHE--STFIPAYMSALTGSTPKREYINS-PR 65
             V K  T+ G I Y F+   G  I         S F     +       K E ++S  +
Sbjct: 6   KRVEKYETKKG-IRYRFKTYVGTDINGKKIWATRSGFTSYTEAKYELDKLKLEGVDSFVK 64

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
           +K   +  L +++  +         +  ++E Y   I  K G+    KIT   ++    +
Sbjct: 65  QKQIKVNDLFTQWFDTYQTTVKESTAHKTYEMYKIHIKPKYGNAYVDKITPASLQRFANA 124

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-----PWTKEDMQ 180
                      L  +       +   Y+ +NP   +  PK+ T   R       ++E++ 
Sbjct: 125 LSKKLVKYRTALGILERTLNLGISLGYLKVNPFSKILIPKKTTRKRRDTSINFLSREELD 184

Query: 181 QFKSFW-SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT---------- 229
            F     S      L F  L  +GLR  ++       +  N   I   KT          
Sbjct: 185 TFLKKAESINHLYYLFFLLLASTGLRKGEALALHWSDIDFNTNQISVTKTLAYGLDNKYI 244

Query: 230 -------GTIITVELP----DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF-KAKA 277
                   ++ TV L     +  +K      I  E  F   D   +  ++ + W      
Sbjct: 245 VQTPKSPKSLRTVPLSTHLKEELLKYKDNQKIDTEIIFHTIDGNYLRLSKPTRWLDTIYK 304

Query: 278 TKAGVNK-SAHGVRKFSATISADAG--ATAHELMATYGWKTVDQA-ETYTKGADRIRLGI 333
               + + + HG R   A++  ++       ++ A  G +TV+     YT   ++ +  +
Sbjct: 305 QLPDLKRITTHGFRHTFASLLIESNPYIKPSDVQAILGHETVEMTLNIYTHVTNQSKKKV 364

Query: 334 KNS 336
             S
Sbjct: 365 AQS 367


>gi|257791278|ref|YP_003181884.1| integrase family protein [Eggerthella lenta DSM 2243]
 gi|257475175|gb|ACV55495.1| integrase family protein [Eggerthella lenta DSM 2243]
          Length = 357

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 46/288 (15%), Positives = 87/288 (30%), Gaps = 41/288 (14%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR--- 126
            +  +  Y +      L +N+ ++ E     +I+   G      IT K +          
Sbjct: 58  FEAFVKRYSEDVR-PRLKLNTWLTKEHIIRTKIVPFFGPKRMCDITPKDVVDWQNRMVGS 116

Query: 127 ---KHTPSSAIQFLTS---MRVLFKWAVRQEYVAINPCL-SVERPKRKTEGIRPWTKEDM 179
              +  P S     T    +  +F  AV+   +  +P   +++  +RK   +R WTKE  
Sbjct: 117 YDDEGKPYSGTYLRTINNQLSAIFNHAVKYYGLGKSPATPTIKIGERKGAEMRFWTKEQY 176

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN--IFSIKTQ---------- 227
             F     +      AFE L + GLR  +        +     +  +             
Sbjct: 177 LAFSEEVMDKPASFYAFEILYWCGLRVGELLALEPNDIDLGKCLIHVTKSYQRIRRRDVI 236

Query: 228 ------KTGTIITVE--LPDGFMKLLAMTPIGKET--FFINNDKQKMNATQFSIWFKAKA 277
                 K+   + +   L D     L   P  +     F          +      K   
Sbjct: 237 TSPKTPKSKRDVVMPEFLADELADFLGSIPEERRACRIFC------FTKSYLHHEMKRGC 290

Query: 278 TKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              G+     H +R    ++  + G +A  +    G +T +    Y  
Sbjct: 291 AACGLEPIRIHDLRHSHVSLLIEMGFSAIAIADRLGHETYEMTLRYAH 338


>gi|319428591|gb|ADV56665.1| integrase family protein [Shewanella putrefaciens 200]
          Length = 389

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 44/266 (16%), Positives = 83/266 (31%), Gaps = 19/266 (7%)

Query: 93  ISFESYFDQIIRKSGDFDYRKIT--TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQ 150
             +  + +    +   +         +H          + ++A  +   +R     A R 
Sbjct: 125 HRYHRHAELTFEQVDKYFLEGFRHYLQHEAITKSDTGLSRNTACSYFNKIRAALNQAQRD 184

Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210
             +  NP   V+  K +       T ++++            R AF F   +GLR SD  
Sbjct: 185 RIIRDNPVEQVKSIKAERTQRTYLTLDEVKALTKAECRYDVLRRAFLFSCTTGLRWSDIH 244

Query: 211 RAGVQHLQN-----NIFSIKTQK----TGTIITVELPDGFMKLLAMTPIGKETFFINNDK 261
           +     ++              K       +  ++LPD  ++LL +   GK T       
Sbjct: 245 KLVWGEIELFAQGHYRIIFSQIKLKNSGNGLQYLDLPDSAVRLLNLENKGKPT---ERVF 301

Query: 262 QKMNATQFSI-WFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           + +    +S       A +AG+ K  + H  R   A      G   + L    G   +  
Sbjct: 302 KGLRYDSYSNVALVQWAIRAGITKHVTFHAGRHTFAVNQLARGLDIYSLSRLLGHSELRT 361

Query: 319 AETYTKGADRIRLGIKNSRRISSVVD 344
            E Y    +  R   +  R    + D
Sbjct: 362 TEIYADILETRR--TEAMRTFPDIFD 385


>gi|295086030|emb|CBK67553.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A]
          Length = 368

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 43/242 (17%), Positives = 88/242 (36%), Gaps = 19/242 (7%)

Query: 101 QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
           ++  K  D+  +     H  + +       +SA  + ++ R L K A +++ +  N    
Sbjct: 134 ELCEKFKDYLLKCKQINHPNAYISR-----NSAAGYYSTFRALLKIAYKEKMLRENLNDF 188

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220
           +E+ + K       T +++++  +   +    + A  F   +GLR SD  +   +  +  
Sbjct: 189 LEKIEWKEVKKEYLTLDEVKKLAATPCKIPVLKQASLFACMTGLRISDILKLDWRDFEVG 248

Query: 221 -----IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKA 275
                   I T+KT T  T+ +    ++L      GK   F     + +  +      K 
Sbjct: 249 PDQGYYIRICTEKTETEATLPISQEALELCGEWGTGK--VF-----KGLTRSMTHHPLKQ 301

Query: 276 KATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
              +AG+ K  + H  R   A I    G   + +      K V   + Y    +  +   
Sbjct: 302 WIAEAGIRKHITFHCFRHSYAVIQISLGTDIYTVSKMLTHKNVTTTQIYADLVNSKKRET 361

Query: 334 KN 335
            N
Sbjct: 362 AN 363


>gi|294795037|ref|ZP_06760172.1| XerC/D integrase-recombinase protein (XerC/D) [Veillonella sp.
           3_1_44]
 gi|294454399|gb|EFG22773.1| XerC/D integrase-recombinase protein (XerC/D) [Veillonella sp.
           3_1_44]
          Length = 283

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 55/287 (19%), Positives = 106/287 (36%), Gaps = 21/287 (7%)

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
           +N  ++   TL+ L +E+       S++ ++  S+   F  I     D     I  +H++
Sbjct: 8   LNRRQRNTITLRQLFNEWLPIHS-QSISNSAVKSYHIAFKHIS-NIADMPITDIHFQHLQ 65

Query: 121 SGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER-PKRKTEGIRPWTK 176
           + + S      + SS  +  T +  LF +A+ ++Y   N  + +   P   T   R +T+
Sbjct: 66  NVINSMHVKGLSYSSCKKVRTLLNQLFNYAIIKDYPITNYVIHLTLGPNIPTIRRRVFTR 125

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ----KTGTI 232
           + + +     +  S        LLY+GLR  +      Q +      +  +    K G  
Sbjct: 126 QQINKLWEVDTSYSH---MILILLYTGLRIGELLNLRKQDIHRRSSYLIVRHAKTKAGEG 182

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKF 292
             + +    M L+       E +        ++ T F   FK    +     + H  R  
Sbjct: 183 RIIPIHHRIMPLIEQVYTSTEAYLFT-----ISYTTFHKNFKDIMKQLNCKHTIHDTRHT 237

Query: 293 SATISADAGATAHELMATYGWKTVD-QAETYTKGADRI-RLGIKNSR 337
            A+   D+ A  + L +  G K  D     YT    R  R  ++  +
Sbjct: 238 FAS-LLDSVAPPNTLRSLLGHKQGDITTRVYTHKTIRELRKAVELLK 283


>gi|167841450|ref|ZP_02468134.1| phage integrase family protein [Burkholderia thailandensis MSMB43]
          Length = 339

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 50/279 (17%), Positives = 97/279 (34%), Gaps = 34/279 (12%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-- 128
           L+ +I  Y +         +S             + G +   K+T   + +  + R    
Sbjct: 59  LRDVIDRYLRDVTPSKKGESSETWRLKAIQ--RDEIGSYSVGKLTPAVVANWRDRRLAGT 116

Query: 129 -----TPSSAIQFLTSMRVLFKWAVRQEY---VAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                + S+  + +  +  + + A R+E+     +NP   V RPK      R  T ++  
Sbjct: 117 DGRPVSGSTVNREMNLLHHVLETA-RKEWGLGAPVNPVSEVRRPKNSPARERRLTSDEKV 175

Query: 181 QFKSFWSE-----GSQPRLA--FEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQ--KT 229
              +   +     G Q  LA   E  L +G+R  +  +  ++ +   +    ++    KT
Sbjct: 176 ALLAACRQTHSRSGRQSYLADVVELALETGMRQGEIIKLEIEQVRLDDRFVGLRAGGTKT 235

Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM---NATQFSIWFKAKATKAGV-NKS 285
               TV L     ++L      + T       +      +      F     +AG+ + +
Sbjct: 236 EEARTVPLSTRAAEILKSVIGDRTT------GRVWVGLTSDAVKRAFIRARDRAGIKDLT 289

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            H  R  + T   + G T  E+M+  G KT      YT 
Sbjct: 290 FHDSRHDATTRFVELGLTDTEVMSITGHKTQSMMRKYTH 328


>gi|149200178|ref|ZP_01877201.1| phage integrase [Lentisphaera araneosa HTCC2155]
 gi|149136715|gb|EDM25145.1| phage integrase [Lentisphaera araneosa HTCC2155]
          Length = 328

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 44/266 (16%), Positives = 98/266 (36%), Gaps = 28/266 (10%)

Query: 79  RKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFL 137
            KSA +    A  +R S+     +I +     +  +IT + ++      K   + A+  +
Sbjct: 12  MKSALFLQGKAHRTRDSYLRALRRINKML-TLELDEITEEDLKKYF--LKLLRTYAVPTV 68

Query: 138 TS----MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
            S    +   +K+ + +E+   N    + R +   +     T++++    S+       R
Sbjct: 69  KSDRCGLAFFYKYVLSREF---NWGK-IIRIQTVHKLPSVLTQKEIAHVLSYVKRWRH-R 123

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKLL------ 245
           +    +   GLR S++ +     +  +  I  I+  K      V LPD  ++++      
Sbjct: 124 VCLTAIYSMGLRVSEALKMRPSDICVERKILHIRNSKGCRDRLVPLPDLSLQMINDFWLS 183

Query: 246 -----AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISA 298
                 + P  ++   + N  + M        F+    ++G+ K  S H +R   AT   
Sbjct: 184 HRSPNYIFPQIRDKSNMVNIDKHMYIGAVQGAFRMAVLESGIMKRVSVHNLRHSYATHMM 243

Query: 299 DAGATAHELMATYGWKTVDQAETYTK 324
           + G     +    G + +     Y +
Sbjct: 244 EKGVPIMAIQEILGHRDIKTTMIYAR 269


>gi|20385054|gb|AAM21168.1|AF254788_3 putative integrase/recombinase Xer [Geobacillus stearothermophilus]
          Length = 304

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/290 (14%), Positives = 87/290 (30%), Gaps = 39/290 (13%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----KHT 129
           +++EY         + N+ IS+ +  +   +         +T   IR  ++      +  
Sbjct: 1   MLNEYVIYLQEKGASPNTIISYTNDLNIFFQDLHIRPSDYVTPADIRKWIQQMLNPAEGK 60

Query: 130 P---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP---WTKEDMQQFK 183
           P   S+  + L S+R  + WAV+   +  NP   ++  K   E        T+E+ +   
Sbjct: 61  PLAISTINRRLNSLRSFYAWAVKHHKIEQNPMKDIQDLKSADEDTEKIMWLTEEEFEDLL 120

Query: 184 SF-------------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
                            +  + R     L Y+GLR  +     +  L   +  I+    G
Sbjct: 121 QRMRKKPVQSRGVDPEEKYRRDRAVVYLLTYAGLRVEELSNLKLTDLDLEMKRIRIVGKG 180

Query: 231 TII-TVELPDGF-----------MKLLAMTP--IGKETFFINNDKQKMNATQFSIWFKAK 276
             + TV + +              ++    P        F +    K +        ++ 
Sbjct: 181 MKVRTVPISNILLAELEDWLKFRAEMAKKKPHVAESPYVFYSQRSPKFSVRGIQRMIESY 240

Query: 277 ATKAGVNKSAHGVRKFSATISADA-GATAHELMATYGWKTVDQAETYTKG 325
           +       + H  R         A      ++    G   +     Y K 
Sbjct: 241 SLP-NKKLTPHMFRHTFCKWMLKATNNDIEKVRRLAGHSNIATTSRYLKD 289


>gi|237653457|ref|YP_002889771.1| integrase [Thauera sp. MZ1T]
 gi|237624704|gb|ACR01394.1| integrase family protein [Thauera sp. MZ1T]
          Length = 330

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 46/317 (14%), Positives = 100/317 (31%), Gaps = 18/317 (5%)

Query: 17  RHGKIIYYFR-KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75
           R     +  R   HG                +  ++     K  + N    + TTL  ++
Sbjct: 5   RQRGNRWQCRVTRHGFPPETKSFATKADAETWARSIEVEMDKGVHQNRASVERTTLADIL 64

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT--PSSA 133
             Y +                +       K        ++   +    + R  T    + 
Sbjct: 65  LRYAEEVTPCKKGAKDEAIRLNALRA--NKLAKHSLANLSAAAVAKFRDERLKTVSAGTV 122

Query: 134 IQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWT-KEDMQQFKSFWSEGSQ 191
           ++ L  +  +   A R+  +   N   ++ +P++     R  +  E+ +   +    G +
Sbjct: 123 LRDLALISSVLNHARREWGFPVENAVQAIRKPRQPQGRERVLSHDEEARLLAASAPIGRR 182

Query: 192 P---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS--IKTQKTGTIITVELPDGFMKLLA 246
               +      L + +R  +      +H+  +  +  +   K GT   V L    +  L 
Sbjct: 183 SPWLQPIIILALETAMRRGELLALRWEHVSLDKRTALLPDTKNGTRRLVPLSPRAIDTLK 242

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAH 305
             P       I+     ++     + FK    +AG++    H +R  + T  A+      
Sbjct: 243 HMPRA-----IDGRVFPISEPALHLRFKLACDRAGIDGLHFHDLRHTATTRLAEKLTNLA 297

Query: 306 ELMATYGWKTVDQAETY 322
           EL A  G K++   + Y
Sbjct: 298 ELSAVTGHKSLQMLKRY 314


>gi|85374026|ref|YP_458088.1| tyrosine recombinase XerC [Erythrobacter litoralis HTCC2594]
 gi|84787109|gb|ABC63291.1| tyrosine recombinase XerC [Erythrobacter litoralis HTCC2594]
          Length = 264

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/229 (15%), Positives = 70/229 (30%), Gaps = 18/229 (7%)

Query: 113 KITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAV-RQEYVAINPCLSVERPKRKTEGI 171
            +T +   +   +     +SA + L++++    +A              +  P+ K    
Sbjct: 18  AVTLRRHLAARRAEGLANTSAARELSALKAFIAYARSETGDAEAT-APRLRGPRIKKGLP 76

Query: 172 RPWTKED-------MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
           RP T ++       +    +    G + R     L  +GLR +++     + +       
Sbjct: 77  RPVTPDEAINLADTVDASAADDWIGKRDRAVLLLLYGAGLRIAEALSLTGKAVPLGESLQ 136

Query: 225 KTQKTGTIITVELPDGFMKLLAMTPI-------GKETFFINNDKQKMNATQFSIWFKAKA 277
            T K G    V +       +A            K   F       ++            
Sbjct: 137 VTGKGGKQRVVPILPLIGDAVADYAKTCPWPIEPKGPLFRGAKGGPLSQGMIQKTTARAR 196

Query: 278 TKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              G+    + H +R   AT    AGA    L    G  ++   + YTK
Sbjct: 197 RALGLPDTATPHALRHSFATHLLGAGADLRSLQELLGHASLGSTQIYTK 245


>gi|322383343|ref|ZP_08057137.1| phage integrase-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321152377|gb|EFX45182.1| phage integrase-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 413

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 46/327 (14%), Positives = 110/327 (33%), Gaps = 60/327 (18%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132
           WL SEY+ +     + +++    +     ++          IT K  +  +        S
Sbjct: 92  WL-SEYQATGT---VKISTVRIRKKGIKLLLPYLAKLRISIITAKQYQHALLDLHDKGYS 147

Query: 133 AIQFLTSM---RVLFKWAVRQEYVAINPC---------LSVERPKRKTEGIRPWTKEDMQ 180
               +++    R++F+ A+  + +  +P           ++E  + + E  +   KE++ 
Sbjct: 148 NNTIVSAHQTGRMIFQRAIELKIIKNDPTSSAVIPKRQRTIEDLETEKEIPKYMEKEELA 207

Query: 181 QFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT--------- 229
            F     E    R    F  L Y+G+R  + C      +  +  ++   KT         
Sbjct: 208 LFLQTAKEKGLDRDYAIFLTLAYTGMRVGELCALKWSDIDFSEQTVSITKTYYNPNNNIK 267

Query: 230 -----------GTIITV---ELPDGFMKLLAMTPIGKETF--------FINND------K 261
                         + +   ++ D   +L A     K  F        F+ +        
Sbjct: 268 NYTLLTPKTKSSKRVIIVDKKVLDELEQLQAEQKRIKMFFRKTYHDKNFVFSQQGEENAG 327

Query: 262 QKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
                   ++        AG+N   + H +R    ++ A+A  +  ++M   G ++ +  
Sbjct: 328 FPTYPKLVALRMTRLLKLAGLNTKLTPHSLRHTHTSLLAEARVSLEQIMQRLGHRSDETT 387

Query: 320 E-TYTKGADRIRLGIKNSRRISSVVDS 345
           +  Y       +   + S++ + ++ S
Sbjct: 388 KNIYLHVTKPKKK--EASQKFAELMSS 412


>gi|295101278|emb|CBK98823.1| Site-specific recombinase XerD [Faecalibacterium prausnitzii L2-6]
          Length = 327

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/289 (12%), Positives = 85/289 (29%), Gaps = 16/289 (5%)

Query: 48  MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG 107
             A+  +             P      +  +  +      +  +   +    + +I   G
Sbjct: 26  RDAMAETLEGATITYDSGSIPADEADAVEAFITAKRIEGCSEKTLSYYRKTIEALIAGVG 85

Query: 108 DFDYRKITTKHIRSGV----ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163
               R+ITT  +R  +      R+ +  +       +   F W   ++++  +P   + +
Sbjct: 86  -KAVRQITTDDLRRYLTNYQVQRRSSKVTIDNIRRILSSFFSWLEDEDFIVKSPVRRIHK 144

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIF 222
            K        +T E ++  +   +  ++     + L  SG+R  +      + +  N   
Sbjct: 145 VKTAKVVKDTYTDEVLELMRDNCTT-ARDLAMIDLLASSGMRVGELVTLNREDINFNERE 203

Query: 223 SIKTQKTGTIITVELPDG----FMKLLAMTPIGKETFFINNDKQKMNATQFS---IWFKA 275
            +   K      V             L          F++  K   +           + 
Sbjct: 204 CVVIGKGNKERLVYFDARTKIHLQNYLEGRTDENPALFVSL-KAPFDRLMIGGVETRLRE 262

Query: 276 KATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
              +  + K   H  R+  AT + D G    ++    G + +D    Y 
Sbjct: 263 LGKRLNIPKVHPHKFRRTLATTAIDKGMPIEQVQQLLGHQKIDTTMHYA 311


>gi|193067180|ref|ZP_03048149.1| site-specific recombinase, phage integrase family [Escherichia coli
           E110019]
 gi|192959770|gb|EDV90204.1| site-specific recombinase, phage integrase family [Escherichia coli
           E110019]
          Length = 391

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 44/311 (14%), Positives = 93/311 (29%), Gaps = 63/311 (20%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK-ITTKHIRSGVESR-- 126
           T+K L  ++        +A  S  ++ +    I+   G+ +    I  + +    +    
Sbjct: 80  TIKELAEKFLALKE-TEVAKTSLNTYRAVIKNILSIIGEKNLASSINKEKLLEVRKELLT 138

Query: 127 --------------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
                           T  +   ++T++  +F++ V   Y+A NP   +   K       
Sbjct: 139 GYQIPKSNYIVTQPGRTAVTVNNYMTNLNAVFQFGVDNGYLADNPFKGISPLKESRTIPD 198

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK----- 225
           P  +E+  +         Q +  +   +Y+G+R  + C  G + +   N    I+     
Sbjct: 199 PLAREEFIRLIDAC-RNQQAKNLWCVSVYTGVRPGELCALGWEDIDLKNGTMMIRRNLAK 257

Query: 226 --------TQKTGTIITV--ELPDGFMKLLAMTPIGKETFF------------------- 256
                      T  +I +     D     + +T + KE                      
Sbjct: 258 DRFTVPKTQAGTNRVIHLIKPAIDALRSQMTLTRLSKEHIIDVHLREYGRTEKQKCTFVF 317

Query: 257 -------INNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELM 308
                  + N             + A   +AG+ ++ ++  R   A  S  AGA    + 
Sbjct: 318 QPEVSARVKNYGDHFTVDSIRQMWDAAIKRAGLRHRKSYQSRHTYACWSLTAGANPAFIA 377

Query: 309 ATYGWKTVDQA 319
              G       
Sbjct: 378 NQMGHADAQMV 388


>gi|330431293|gb|AEC16352.1| site-specific tyrosine recombinase XerC [Gallibacterium anatis
           UMN179]
          Length = 312

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 45/305 (14%), Positives = 102/305 (33%), Gaps = 42/305 (13%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--K 127
           +   L+ ++        L   ++ S+        R        +IT + +      +  K
Sbjct: 12  SFDDLLEKFLMM---KYLRPETKKSYRKMVSLFTRSYPGILADEITKELVCKWRNEQLSK 68

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAI--NPCLS--VERPKRKTE---------GIRPW 174
              +S   +L + + +  W +    +    NP     V+ P+++ +          I+  
Sbjct: 69  LRETSVNSYLRNCKAVINWGIENNLINRIDNPFCGTFVKEPRKQRKIITQKDINILIKCI 128

Query: 175 TKEDMQQF--KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQK 228
           T+ED+++     + +      L F   LY+G+R S   +  + ++  +           K
Sbjct: 129 TQEDVEKLCGNGYCTIAFAQALIFTL-LYTGMRRSQLLKLKIHNIDLSSRTIFIPHNINK 187

Query: 229 TGTIITVELPDGFMKLLAM---------TPIGKETFFIN------NDKQKMNATQFSIWF 273
                 + +       LA+          PI  + F IN       +   M   Q + +F
Sbjct: 188 NNDDHMIPISSKLYPYLAVFLDELKIRKIPIDSQLFNINIFSSTTRNNGNMTNDQLAHFF 247

Query: 274 KAKATKAGVNKSAHGVRKFSATISADA-GATAHELMATYGWKTVDQAETYTK-GADRIRL 331
           +  +    +  S+H  R   AT    +     +      G + +    +Y +   D +R 
Sbjct: 248 RKLSKITRIKLSSHRFRHTIATQLMRSPEQNLYAAQKLLGHRDIKTTLSYIEFDVDMLRK 307

Query: 332 GIKNS 336
            + + 
Sbjct: 308 VVDSI 312


>gi|283768118|ref|ZP_06341033.1| integrase [Staphylococcus aureus subsp. aureus H19]
 gi|283461997|gb|EFC09081.1| integrase [Staphylococcus aureus subsp. aureus H19]
          Length = 378

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/306 (13%), Positives = 97/306 (31%), Gaps = 47/306 (15%)

Query: 84  WGSLAVNSRI--SFESYFD----QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFL 137
           W     N+    +++         I+    D   +KIT  + +  +       S      
Sbjct: 74  WLEQYQNTVRESTYQRVLTLFDTAILEHFQDVPIKKITVPYCQKVINKWNKKYSDIKAIR 133

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRK----TEGIRPWTKEDMQQFKSFWSEGSQPR 193
                +FK+AV  + +  NP    + P++K        + ++ ++++QF +F  +     
Sbjct: 134 IYTSNVFKYAVSLKIIVDNPFAHTKAPRKKEAQQDASTKYYSSDELKQFLTFVEDDPLYY 193

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-----------------GTIITVE 236
             F  L ++G R  +        +     +I   KT                  +  T+ 
Sbjct: 194 AIFRTLAFTGFRRGELMALTWNDIDFTKQTISINKTCARGANYKLVIQEPKTKSSHRTIS 253

Query: 237 LPDGFMKLL---------------AMTPIGKETFFIN-NDKQKMNATQFSIWFKAKATKA 280
           + D    +L                 T    +  F    D +++     +        K 
Sbjct: 254 IDDKTASVLKSWRTHQRVESLKYGHNTSDKHQHVFTTVRDNKQLYPEHCNKALDLICEKN 313

Query: 281 GVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRR 338
              +   HG R    ++  +AG +  E+    G   +    + Y    ++ R   + + +
Sbjct: 314 SFKRIKVHGFRHTHCSLLFEAGLSIQEVQDRLGHGDIKTTMDIYAHATEKQR--DQVADK 371

Query: 339 ISSVVD 344
            +  ++
Sbjct: 372 FAKYIN 377


>gi|270339834|ref|ZP_06006153.2| conserved hypothetical protein [Prevotella bergensis DSM 17361]
 gi|270333598|gb|EFA44384.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
          Length = 381

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 45/268 (16%), Positives = 96/268 (35%), Gaps = 23/268 (8%)

Query: 93  ISFESYFDQIIRKSGDFD-----YRKITTKHIRS-GVESRKHTPSSAIQFLTSMRVLFKW 146
                 F   ++K G  D       K   +H R   +    +  S+    L  +  + + 
Sbjct: 97  RDSRKNFALFLKKRGSGDCLPKEADKDLIEHYRLFMLRDLGNKESTVSNRLRHLHQVIRK 156

Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS---QPRLAFEFLLYSG 203
           A+++ Y+  +P   ++  +  T      T +D+ +  S+    S     RL F    ++G
Sbjct: 157 ALQERYIREDPFEQID-IETPTYERNALTSDDLHKLLSYRPHRSVDNHCRLIFLLGCFTG 215

Query: 204 LRCSDSCRAGVQHL---QNNI--FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFIN 258
           L  SD  +  +  +    +     S+   KT     V L     ++L +   G++   + 
Sbjct: 216 LAFSDLKKLRMDDVYTLDDGRRYISLCRTKTQNRSIVPLLPIAEEILTIVSDGQKEGLL- 274

Query: 259 NDKQKMNATQFSIWFKAKATKAGVN----KSAHGVRKFSATIS-ADAGATAHELMATYGW 313
             ++    + F+   +    KAG+      ++H  R   AT    + G     +    G 
Sbjct: 275 -FREFPTNSHFNRKIRDIIIKAGLPPHTEATSHTARHTFATTICLENGLPIETVSKMLGH 333

Query: 314 KTVDQAETYTKGADRIRLGIKNSRRISS 341
           + +   E Y K   + ++  +    + S
Sbjct: 334 RFISTTELYAK-VSKSKIAREMQPLMGS 360


>gi|239817469|ref|YP_002946379.1| integrase family protein [Variovorax paradoxus S110]
 gi|239804046|gb|ACS21113.1| integrase family protein [Variovorax paradoxus S110]
          Length = 290

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/285 (12%), Positives = 85/285 (29%), Gaps = 22/285 (7%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT--KHIRSGVESRKHTPS 131
           L            L   ++ ++      +                +  +  +  R  +P 
Sbjct: 11  LRQRLLDDMRMRKLGPQTQSAYVRAVRYLASFLQRSPDTATAEDLRRFQLHLVDRGVSPI 70

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           +    +T ++  F   +R+  +       +             ++++  +  +  +   +
Sbjct: 71  TLNATITGLKFFFDVTLRRGEL----VERMSYVHVPQTLPVVLSRDEAARLIA-AATNPK 125

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLAMT- 248
              A      +GLR S+     V  + +   +++    K        L    ++ L    
Sbjct: 126 YHTALSIAYGTGLRVSEIVALKVGDIDSERMTLRVEQGKGRKDRYAMLSPVLLERLRAWW 185

Query: 249 --PIGKETFFINND---KQ----KMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS 297
                K     N      Q     + A Q +      A  A ++K  + H +R   AT  
Sbjct: 186 RYANAKGKMLPNGWLFPGQNPVDPLTARQLNRAVHDAAAAAKIDKRVTMHTLRHSFATHL 245

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSRRISS 341
            +       +    G K ++    YT  A + +R  +    ++S+
Sbjct: 246 LEQKVDIRVIQVMLGHKKLETTSVYTHVATEVLREVVSPLEKLSA 290


>gi|254431040|ref|ZP_05044743.1| integron integrase [Cyanobium sp. PCC 7001]
 gi|197625493|gb|EDY38052.1| integron integrase [Cyanobium sp. PCC 7001]
          Length = 323

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 49/315 (15%), Positives = 102/315 (32%), Gaps = 59/315 (18%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK----HT 129
           LI  YR+       A  +  ++E +  + +R       R++ +  + + +         +
Sbjct: 10  LIQRYREELQTRHYARRTVTTYEQWLRRYLRFHSLRHPREMGSAEVNAFLTHLAVDLQVS 69

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            S+  Q L+++  L++  + ++         V R +         T E+++        G
Sbjct: 70  ASTQNQALSALLFLYRELLERDLEL----AGVVRARTPRRLPVVLTVEEVRSVLQRLD-G 124

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAM 247
           ++  +A   L  SGLR  ++ R  V  L       +++  K G      LP    + L  
Sbjct: 125 TEALVA-GLLYGSGLRLMEALRLRVHDLDFGRQELTVRNGKGGKDRRTLLPRRLAEQLRP 183

Query: 248 --------------------------------TPIG--------KETFFIN-----NDKQ 262
                                            P+         ++T + N       + 
Sbjct: 184 HLQEVKSIHQQDLAEGWGRVQLPHALGRKYPHAPVEWGWQWVFPQQTRWCNPASGEQGRH 243

Query: 263 KMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
            M+ +      +     AG++K A    +R   AT   + G     +    G   +    
Sbjct: 244 HMDPSLIQKAVRRAVLAAGISKPATCQSLRHSFATHLLERGQDIRTIQELLGHSDLKTTM 303

Query: 321 TYTKGADRIRLGIKN 335
            YT   +R  LG+ +
Sbjct: 304 IYTHVLNRGPLGVSS 318


>gi|320654688|gb|EFX22689.1| Site-specific recombinase, phage integrase family protein
           [Escherichia coli O55:H7 str. 3256-97 TW 07815]
          Length = 386

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 47/275 (17%), Positives = 94/275 (34%), Gaps = 26/275 (9%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
           K +IS +        L+  +        D +  +    ++     + +R G    ++ P 
Sbjct: 80  KSIISFWMLHFRETILSDITTEKIMEAVDGMENRRHRLNWEMSRDRCLRLGKPVPEYKPK 139

Query: 132 SAI-----QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            A      + L  +R +   AV   ++   P   +  P+ K   IR  TKE+ ++  +  
Sbjct: 140 LASKGTKTRHLAILRAILNMAVECGWLDRAP--KISTPRVKNGRIRWLTKEESKRLFAEI 197

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGFM 242
           +    P + F     +GLR S+        +  +           K G  I V L +   
Sbjct: 198 APHFFPVVMFAIT--TGLRRSNVTDLEWSQVDLDKKMAWMHPDETKAGNAIGVPLNETAC 255

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFS------------IWFKAKATKAGV-NKSAHGV 289
           ++L       + +   + K    +                  +K    +AG+ N   H +
Sbjct: 256 QILRKQQGLHKRWVFVHTKPAYRSDGTKTAAVRKMRTDSNKAWKGALKRAGISNFRFHDL 315

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           R   A+    +G +   L    GW+T++  + Y  
Sbjct: 316 RHTWASWLVQSGVSLLALKEMGGWETLEMVQRYAH 350


>gi|215486492|ref|YP_002328923.1| predicted integrase [Escherichia coli O127:H6 str. E2348/69]
 gi|215264564|emb|CAS08932.1| predicted integrase [Escherichia coli O127:H6 str. E2348/69]
          Length = 376

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 57/368 (15%), Positives = 111/368 (30%), Gaps = 61/368 (16%)

Query: 16  TRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKR---------EYINSPRK 66
            R+ K+ + +R     +       +        +       ++         E I S   
Sbjct: 20  KRNNKVYWRYRHPITGKNHGLGSIDQKLAETIAAEANSRLARQQMEQMLSLQEKIISDTG 79

Query: 67  KPTTLKWLISEYRKS----AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122
             +T+   ++ YRK        G + +N+     +       + G      IT K + S 
Sbjct: 80  GSSTVTIFLNNYRKIQQERYKNGEIKLNTLKQKAAPLRVFDERFGTRPLDAITVKDVVSV 139

Query: 123 VESRKHTPSSAIQ--FLTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPWTKED 178
           +E  K    + +   F   +  +F+ A +   V    NP  S ++P+      +  T ++
Sbjct: 140 LEEYKARGHNRMGQIFRKVLIDVFREAQQTGDVPPGFNPAESAKKPQV-RISRQRLTFDE 198

Query: 179 MQQ-FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE- 236
               + +   +G   +      L +G R SD C+     +++    ++ QKTGT I +  
Sbjct: 199 WMMIYNAAEKDGYFLQRGMLLALMTGQRLSDICKMQFSDIRDGYLHVEQQKTGTRIAIPL 258

Query: 237 ----------------------LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274
                                 L    +         K           +     ++ FK
Sbjct: 259 ALRCDKLNLTLDDVVSSCRDCVLSPWLLHHHHAKGTAK-------RGGMVKPATLTVAFK 311

Query: 275 AKA-------TKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY--TKG 325
                        G   S H  R  S  +  + G     L    G       + Y   +G
Sbjct: 312 KARDSVDYNWRANGTPPSFHEQRSLSERLFREQGVDTKIL---LGHSNQKMTDIYNDARG 368

Query: 326 ADRIRLGI 333
            +  +L I
Sbjct: 369 KEWKKLVI 376


>gi|291515802|emb|CBK65012.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
          Length = 420

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 47/288 (16%), Positives = 108/288 (37%), Gaps = 40/288 (13%)

Query: 88  AVNSRISFESYFDQ--------IIRKSGDFDYRKIT---TKHIRSGVESRKH-TPSSAIQ 135
              ++ +++   ++        +++K  D   +++     +   + + S  H   ++A +
Sbjct: 127 RDRAQRTYDRLMEERRCLMRYLVLKKLEDVTLKELDVTFIERYYAWMLSDGHCGKTTAFK 186

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
              +++ +   AV Q ++  +P L+ +  P  K       + E++Q+  +      + R 
Sbjct: 187 RTQTLKCVLYVAVEQGWIDRHPFLAFKCAPDYKPRMF--LSDEEIQRLMNIELRYHRQRA 244

Query: 195 ---AFEFLLYSGLRCSDSCRAGVQHL-----QNNIFSIKTQKTGTIITVELPDGFMKLLA 246
               F F  ++GL   D       H+            + QKTGT   + L     + + 
Sbjct: 245 VRDMFIFCCFTGLAYIDLKNLTYDHIVTTPTGEQYIYNRRQKTGTPYHIMLLPIAQEFIE 304

Query: 247 M-----TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSAT-ISA 298
                   I +   F    ++ M  T      K  A K G+ K  S H  R    T ++ 
Sbjct: 305 RYRGYPGKIDETRVFPVKSRKSMCTT-----IKRIAQKCGITKNLSTHIGRHTFGTTVTL 359

Query: 299 DAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSRRISSVVDS 345
           + G     +    G K +   + Y K  A++++   ++ R ++  + +
Sbjct: 360 EKGVPIETVSEMLGHKQITTTQIYAKLTANKMK---EDVRLLTQRIGN 404


>gi|241992584|gb|ACS73643.1| IntI1 [uncultured bacterium]
          Length = 315

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/306 (13%), Positives = 93/306 (30%), Gaps = 62/306 (20%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129
           ++ + R+   +   ++ +  ++  +    IR  G      + +  + + +      RK +
Sbjct: 16  VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75

Query: 130 PSSAIQFLTSMRVLFK--WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            S+  Q L ++   +         ++       + RP+           +++ +   F  
Sbjct: 76  VSTHRQALAALLFFYGKVLCTDLPWLQ-----EIGRPRPSRRLPVVLAPDEVVRILGFL- 129

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQH--LQNNIFSIKTQKTGTIITVELPDGFMKLL 245
           EG   RL  + L  +G+R S+  +  V+     +    ++  K      + LP+     L
Sbjct: 130 EGEH-RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSL 188

Query: 246 AMTPIGKETFFINN---------------------------------------------D 260
                    +++ +                                              
Sbjct: 189 REQLSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVR 248

Query: 261 KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           +  M    F   FK    +AG+ K  + H +R   AT    +G     +    G   V  
Sbjct: 249 RHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVST 308

Query: 319 AETYTK 324
              YT+
Sbjct: 309 TMIYTQ 314


>gi|300866566|ref|ZP_07111255.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506]
 gi|300335430|emb|CBN56415.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506]
          Length = 181

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 60/164 (36%), Gaps = 6/164 (3%)

Query: 165 KRKTEGI-RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223
           K +  G  +  T  ++ +        ++ RL F    Y   R S++     Q +   I +
Sbjct: 2   KVQGNGRAKILTPAEITRLFDRGFLTARDRLLFAVTFYCACRISEALALTTQDIIGGIVT 61

Query: 224 IK---TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK-QKMNATQFSIWFKAKATK 279
           ++   T+      T+ L     K L          F   +  + +  +Q  + FK    +
Sbjct: 62  LRKATTKGKSATRTLPLHPMLAKYLKAYNPDVGFLFPGREGTKPLTRSQADLIFKDACKR 121

Query: 280 AGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
             +   S H +R+ + T  ++AG     +M   G K +   + Y
Sbjct: 122 VRIKGASTHSMRRTALTNLSNAGVPLRVIMEISGHKNLSSLQRY 165


>gi|296102018|ref|YP_003612164.1| phage integrase family protein [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295056477|gb|ADF61215.1| phage integrase family protein [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 372

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 54/304 (17%), Positives = 97/304 (31%), Gaps = 34/304 (11%)

Query: 49  SALTGSTPKREYINSPRKKPT---TLKWLISEYRK----SAHWGSLAVNSRISFESYFDQ 101
           +A       R+  +SP+       +LK  I  Y K    S   GSL++      +   + 
Sbjct: 60  AAAEAEHYLRQIDDSPKATAQRGISLKAWIERYLKIQKQSLDAGSLSLKRFKEKKRMAEL 119

Query: 102 IIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAI--NP 157
           + R+ G    + +  K     ++        SSA+        +F  A     V    NP
Sbjct: 120 LSRRLGSRPMKSLEVKDFAVLLDEYLDAGHASSALCNRVVWVDIFTEAQHAGEVPPGWNP 179

Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217
             + ++P  K    R  + ++ ++  +   E      A    L +G R  D        +
Sbjct: 180 PAATKKPSVKVTRAR-LSLDEWKKILAQIPEDRYSHKAMLLALVTGQRREDIANMKFSDI 238

Query: 218 QNNIFSIKTQKTGTIITVELPDGFMK--------LLAMTPIGKETFFI----NNDKQKMN 265
           ++    I+  KTG  I + L              +          + +    NN  + +N
Sbjct: 239 KDGYLHIEQSKTGARIALPLNLRCEAIGLSLEDVIRKCRDRFVSPYLLHGKMNNKAKPVN 298

Query: 266 ATQFSIWFKAKATKAGV-------NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
               S  F A    AG+         + H  R   +     A     ++    G KT   
Sbjct: 299 LILVSKEFAAARDAAGIVPPAGKTPTTFHEQR-SLSERLYRAQGIDTKI--LLGHKTQST 355

Query: 319 AETY 322
            + Y
Sbjct: 356 TDRY 359


>gi|32474109|ref|NP_867103.1| integrase/recombinase [Rhodopirellula baltica SH 1]
 gi|32444646|emb|CAD74648.1| putative integrase/recombinase [Rhodopirellula baltica SH 1]
          Length = 347

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/188 (15%), Positives = 64/188 (34%), Gaps = 11/188 (5%)

Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217
            + +  P++  +     +K+++Q+     +   + +L    L  +GLR ++  R      
Sbjct: 34  TVGLVSPRKSKQLPVVMSKKEVQRMME-AARTLRDKLLLTVLYATGLRVAEVARLQWSDF 92

Query: 218 Q--NNIFSIKTQKTGTIITVELPDGFMKLLAMT---PIGKETFFINNDKQ---KMNATQF 269
                   ++  K      V L D  + L+        G    F +  ++    ++    
Sbjct: 93  DFDRQQIRVQLGKGKKDRYVMLADDLLPLMRQLWRHTKGVGYLFPSEGRRVDRHLSPRTI 152

Query: 270 SIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
               K     +G+ K  + H  R   AT   ++G     +    G   ++    YTK A 
Sbjct: 153 QRAVKQARILSGIGKAVTPHSFRHSFATHLIESGTDIRFIQKLLGHTNLETTSLYTKVAR 212

Query: 328 RIRLGIKN 335
                + +
Sbjct: 213 MKATAVAS 220


>gi|229551179|ref|ZP_04439904.1| phage integrase [Lactobacillus rhamnosus LMS2-1]
 gi|229315471|gb|EEN81444.1| phage integrase [Lactobacillus rhamnosus LMS2-1]
          Length = 385

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 54/356 (15%), Positives = 108/356 (30%), Gaps = 50/356 (14%)

Query: 13  KERTRHGKIIYYFRK-------GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
           K  T+ GK  +  +           ++ ++    ++       +A          +   +
Sbjct: 6   KYATKDGKEFWRVQVFAGNDLQTGHKKYKVRRGFKTKKEATVAAARLELAISNGDLEEEK 65

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE 124
            KP   + +  E+  +    ++  ++       F+  I+   G      ITTK ++  V+
Sbjct: 66  PKPVFFRDVYEEWYGNYI-NTVRESTWARTAGMFNNHILPAFGGKRIATITTKDVQKAVK 124

Query: 125 SRKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT-EGIRP---WTKEDM 179
                T ++  ++   +  +  +AVRQ Y++ NP  ++  P      G +P   WTKE M
Sbjct: 125 RWFEFTSANYKRWYNYVSSVMDYAVRQGYMSKNPAKAIVLPHHDDLAGDKPENFWTKEQM 184

Query: 180 QQFKSFWSEGSQ--PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT----GTII 233
             F +   + +     + F  L ++G+R  +        +     SIK  KT        
Sbjct: 185 NHFFACIDQENHFDVFIMFRVLAFTGVRRGELLALTWNDVSFKENSIKVNKTLTQGDKGH 244

Query: 234 TVELPDGFMKLLAMTPIGKET----------------------------FFINNDKQKMN 265
            +             P+  +T                             F N      +
Sbjct: 245 QIVQAPKTRAGRRTIPVDGQTMAYLKRWRRIQQETFIQLGINTMQPNQLLFTNTKNGYQS 304

Query: 266 ATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
               S          G+    + HG R    +    AG     +    G       
Sbjct: 305 LNTPSKRLHKLQDDNGLTPRITIHGFRHSFISNLLIAGVPVTSVQKLVGHTDPTIT 360


>gi|229002464|ref|ZP_04160553.1| Integrase/recombinase [Bacillus mycoides Rock3-17]
 gi|228758597|gb|EEM07731.1| Integrase/recombinase [Bacillus mycoides Rock3-17]
          Length = 304

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/302 (13%), Positives = 95/302 (31%), Gaps = 40/302 (13%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG-------VESR 126
           ++ +YRK       + N+ +S+ +      ++        + +  I+          E +
Sbjct: 1   MLHKYRKYLIDKGKSQNTVLSYINDLQIFFQEMRLNPDSYVISNDIKKWTRNMLNPREGK 60

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP---WTKEDMQQFK 183
             + S+  + L ++R  F WA R++Y+ +NP   ++  K   E        T+++ +   
Sbjct: 61  TLSVSTINRRLNTLRSYFSWAEREQYIKVNPMRDIKDLKVADEEYEKIMWLTEKEFEALL 120

Query: 184 SF-------------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
                            +  + R     L Y+GLR  +     +  +  +   I+    G
Sbjct: 121 DRMRKYPVKTRGVNPEEKYRRDRAIIYILTYAGLRVEELSSLKITDIDIDFKKIRVIGKG 180

Query: 231 TII-TVEL--------PDGFMKLLAMTPI-----GKETFFINNDKQKMNATQFSIWFKAK 276
           T + TV +         D       +             F +   +K +        +  
Sbjct: 181 TKVRTVPMSNFLYNEVLDWLQFRNKIAKDKEIVNQSPYVFYSQRSEKFSIRGIQAMIENY 240

Query: 277 ATKAGVNKSAHGVRKFSATISADA-GATAHELMATYGWKTVDQAETYTKGA-DRIRLGIK 334
           +T      + H  R         A      ++    G   +     Y K + D +   ++
Sbjct: 241 STSDK-KLTPHMFRHTFCKWMLKATNNDIEKVRRLAGHSHISTTTRYLKNSFDELTDAVE 299

Query: 335 NS 336
             
Sbjct: 300 AM 301


>gi|255690107|ref|ZP_05413782.1| mobilizable transposon, int protein [Bacteroides finegoldii DSM
           17565]
 gi|260624389|gb|EEX47260.1| mobilizable transposon, int protein [Bacteroides finegoldii DSM
           17565]
          Length = 429

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 72/223 (32%), Gaps = 10/223 (4%)

Query: 110 DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
           DY+       + G ++   + ++A  + +  +   + A    Y+ I+    V+    +  
Sbjct: 182 DYKDYLINAPQGGSKTGTISANTASTYFSIFKAGLRQAFIDGYLTIDLAAKVKNIYYEES 241

Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIK 225
                T E++ Q  +   +    + A  F   +GLR SD  +   + +  +         
Sbjct: 242 QREYLTLEELNQLAATPCDSEILKRAALFSALTGLRHSDIKQLKWRDIVKDKEHYQLHFT 301

Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284
            QKT  +  + + D    L           F                 K     +G+ K 
Sbjct: 302 QQKTKGVEYMPISDQAYSLCGERGDADRLVFEGLQDPSWINRP----VKRWVEASGITKH 357

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            + H  R   AT+    G   + +    G K V   + Y K  
Sbjct: 358 ITFHCFRHTYATLQLTNGTDIYTVSKMLGHKKVTTTQIYAKIV 400


>gi|240143351|ref|ZP_04741952.1| site-specific recombinase, phage integrase family [Roseburia
           intestinalis L1-82]
 gi|257204724|gb|EEV03009.1| site-specific recombinase, phage integrase family [Roseburia
           intestinalis L1-82]
          Length = 306

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 47/276 (17%), Positives = 92/276 (33%), Gaps = 47/276 (17%)

Query: 93  ISFESYFDQIIR-KSGDFDYRKITTKHIRSGVE---SRKHTPSSAIQFLTSMRVLFKWAV 148
             +   +D  ++   G    + +   HI+        +K    +       +R L   AV
Sbjct: 2   QQYRFLYDYYLKGFIGKIKLKNLLPYHIQKVYNNLVEKKMKQGTVNNVRKMIRTLLNEAV 61

Query: 149 RQEYV--AINPCLSVERP-KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLR 205
           R+  +    NP   V+ P     +  R +T+E   QF  +  +     L ++ LLY+G+R
Sbjct: 62  RRGMLSADDNPYPKVKAPSNLPVKQQRSFTEEQRDQFLQYAGKSLYANL-YKLLLYTGMR 120

Query: 206 CSDSCRAGVQHLQ----------------NNIFSIKTQKTGTII-TVELPDGFMKL---- 244
             ++    +  +                   +F I+T KT   I  + L     +     
Sbjct: 121 VGEALALMICDVDWDNHVLHVTKNLQKTTQGMFYIETPKTRESIRDIYLVPEAEEAFKSQ 180

Query: 245 -----LAMTPIGKE-------TFFINNDKQKMNATQFS---IWFKAKATKAGVNKS---A 286
                + + PI ++         F+N   + +N            AK    G +      
Sbjct: 181 LELRKIIVEPIQEDIKGEFENLLFVNTKGKPVNVGSVRQSINRIVAKIRADGNDCPDIWL 240

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           H +R    +I+   G     + A  G  +++    Y
Sbjct: 241 HAMRHGYVSIAVARGVPLEVVQANVGHTSIETTMRY 276


>gi|148559822|ref|YP_001259843.1| site-specific tyrosine recombinase XerD [Brucella ovis ATCC 25840]
 gi|163844051|ref|YP_001628455.1| site-specific tyrosine recombinase XerD [Brucella suis ATCC 23445]
 gi|254700665|ref|ZP_05162493.1| site-specific tyrosine recombinase XerD [Brucella suis bv. 5 str.
           513]
 gi|254707447|ref|ZP_05169275.1| site-specific tyrosine recombinase XerD [Brucella pinnipedialis
           M163/99/10]
 gi|254709011|ref|ZP_05170822.1| site-specific tyrosine recombinase XerD [Brucella pinnipedialis
           B2/94]
 gi|256030536|ref|ZP_05444150.1| site-specific tyrosine recombinase XerD [Brucella pinnipedialis
           M292/94/1]
 gi|256059999|ref|ZP_05450181.1| site-specific tyrosine recombinase XerD [Brucella neotomae 5K33]
 gi|256158528|ref|ZP_05456422.1| site-specific tyrosine recombinase XerD [Brucella ceti M490/95/1]
 gi|256253942|ref|ZP_05459478.1| site-specific tyrosine recombinase XerD [Brucella ceti B1/94]
 gi|256370430|ref|YP_003107941.1| tyrosine recombinase [Brucella microti CCM 4915]
 gi|260169442|ref|ZP_05756253.1| site-specific tyrosine recombinase XerD [Brucella sp. F5/99]
 gi|148371079|gb|ABQ61058.1| tyrosine recombinase XerD [Brucella ovis ATCC 25840]
 gi|163674774|gb|ABY38885.1| tyrosine recombinase XerD [Brucella suis ATCC 23445]
 gi|256000593|gb|ACU48992.1| tyrosine recombinase [Brucella microti CCM 4915]
          Length = 307

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 43/272 (15%), Positives = 93/272 (34%), Gaps = 32/272 (11%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHT---PSSAIQFLTS 139
              A N+  S+    +    +      +  +  T HIR  +++       P+S  + L++
Sbjct: 18  RGAAQNTLESYRRDLEAAAEELAAKGVNLAEAETGHIRMTLDTMAAQGFAPTSQARRLSA 77

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS------------ 187
           +R  F++   + +   +P   ++ PK++    +  + E++ +     +            
Sbjct: 78  LRQFFRFLYSEGFRQDDPTGILDAPKKQKPLPKIMSVENVGKLLDRAALEANEAAEPGER 137

Query: 188 -EGSQPRLAFEFLLYSGLRCSDSCRAGVQ-HLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
            +  +     E L  +GLR S+     V     ++ F +   K      V L       L
Sbjct: 138 IKALRLHALLETLYATGLRVSELVGLPVTVARTDHRFLLVRGKGSKDRMVPLSRKARDAL 197

Query: 246 AM-------TPIGKETFFIN---NDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKF 292
                     P   +  ++    ++   +    F+   K  A +AG+     S H +R  
Sbjct: 198 QKFLTLRDSLPGSDDNPWLFPAFSESGHLARQVFARELKGLAARAGLAASSVSPHVLRHA 257

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324
            A+     GA    +    G   +   + YT 
Sbjct: 258 FASHLLQNGADLRTVQQLLGHADISTTQIYTH 289


>gi|15897309|ref|NP_341914.1| XerC/D integrase-recombinase protein (xerC/D) [Sulfolobus
           solfataricus P2]
 gi|284174561|ref|ZP_06388530.1| XerC/D integrase-recombinase protein (xerC/D) [Sulfolobus
           solfataricus 98/2]
 gi|13813520|gb|AAK40704.1| XerC/D integrase-recombinase protein (xerC/D) [Sulfolobus
           solfataricus P2]
 gi|261601982|gb|ACX91585.1| integrase family protein [Sulfolobus solfataricus 98/2]
          Length = 291

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 43/264 (16%), Positives = 89/264 (33%), Gaps = 33/264 (12%)

Query: 69  TTLKWLISEYRKSAHWGSLAVN--SRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
            T+K   +  R    + +      +      +   ++ + G     ++  K  +S     
Sbjct: 30  GTIKLYSTAVRDFLDFINKDPRKVTSEDLNRWISSLLNREGKVKGDEVEKKRAKSV---- 85

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
                +   ++ ++R   KW        IN  +    PK + + ++   +  +Q+  +  
Sbjct: 86  -----TIRYYIIAVRRFLKW--------INVSVRPPIPKVRRKEVKALDEIQIQKVLNAC 132

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDG---- 240
              ++ +L    LL +GLR ++     V+ +   NN+  ++  K G    V   D     
Sbjct: 133 KR-TKDKLIIRLLLDTGLRANELLSVLVKDIDLENNMIRVRNTKNGEERIVFFTDETKLL 191

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADA 300
             K +       + F        +         K    K G++   H +R   AT+S   
Sbjct: 192 LRKYIKGKKAEDKLF-------DLKYDTLYRKLKRLGKKVGIDLRPHILRHTFATLSLKR 244

Query: 301 GATAHELMATYGWKTVDQAETYTK 324
           G     L    G K +   + YT 
Sbjct: 245 GINVITLQKLLGHKDIKTTQIYTH 268


>gi|283783412|ref|YP_003374166.1| site-specific recombinase, phage integrase family [Gardnerella
           vaginalis 409-05]
 gi|283442114|gb|ADB14580.1| site-specific recombinase, phage integrase family [Gardnerella
           vaginalis 409-05]
          Length = 323

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 51/312 (16%), Positives = 96/312 (30%), Gaps = 41/312 (13%)

Query: 56  PKREYINSPRKKPTTLKWLISEYRKSAHWGS--LAVNSR----ISFESYFDQIIRKSGDF 109
           P +E       + TTL     E+ +        L  +++     ++E++   ++      
Sbjct: 2   PPQEVKRREIAEHTTLDAYFPEWLEKRRVRGKPLKDSTKYATTKTYENHIKPVLGSVALA 61

Query: 110 DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEY------VAINPCLSVER 163
           D         R G++     P      +  +R +   A+R +       +  NP    E 
Sbjct: 62  DLSTQMVNDFRDGLD--AAQPDMVRNTMKVLRAIVNSALRPDINGNPPILKNNPFTVSEA 119

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223
              +   I   T E+++   S   +   P +    L     R  + C   V  +     +
Sbjct: 120 KVERRHEITIATPEEVKTIYSMMPDSYAPTVLLASL--GAFRIGEICALKVSDIDFKHNT 177

Query: 224 IKTQKT---------------------GTIITVELPDGFMKLLAMTPIGKETFFI---NN 259
           +   +T                       +I V L DG  + +    + K+ +      +
Sbjct: 178 VTISRTRATTPNSTVLTTAPKTEHSNRSEVIPVSLVDGLKEFVKKQELSKDDWLFPMRTD 237

Query: 260 DKQKMNATQFSIWFKAKATKAG-VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
               +       ++      A   +   H +R    T  A +GAT  ELM   G      
Sbjct: 238 RTTPIRTNTLRDYYDKARLAANRPDLHFHDLRHTCLTWLAQSGATVKELMDMAGHADPKI 297

Query: 319 AETYTKGADRIR 330
           A  Y   AD  R
Sbjct: 298 AMIYQHAADERR 309


>gi|168206201|ref|ZP_02632206.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Clostridium perfringens E str. JGS1987]
 gi|170662365|gb|EDT15048.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Clostridium perfringens E str. JGS1987]
          Length = 368

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 52/338 (15%), Positives = 116/338 (34%), Gaps = 42/338 (12%)

Query: 41  STFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD 100
             F+  Y      S+        P+ K   LK  I ++  +    S+ +N+R ++ S  +
Sbjct: 42  EKFVNEY------SSKVDNGFLLPKSKDIYLKDFILDWFYNHKVLSIGINTRNNYLSRIE 95

Query: 101 -QIIRKSGDFDYRKITTKHIRSGVE-----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVA 154
             II   G++   ++ T  I++             PSSA + + ++    K+A + + + 
Sbjct: 96  TYIIPLLGNYKLTELDTLTIQNFYNHLLTKDNPLKPSSAKKVIEALSNCLKYAKKLKLIT 155

Query: 155 INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGV 214
             P   +E+   +   I  W+K+ +  F +   + +           +G+R  + C    
Sbjct: 156 YLPT-DIEKVNIEKPKIEFWSKQQLDFFLNEIKD-TYLYFPVLICALTGVRVGELCGLKW 213

Query: 215 QHLQNNIFSIKTQK-------------------TGTIITVELPDGFMKLLAMTPIGKETF 255
             +      +   +                   T +  T+ +P   +K           F
Sbjct: 214 CDVDFGRGYLNITRQVIADKSTNTLVCTENLKTTKSDRTISIPKVLLKEFEKNLKAPNDF 273

Query: 256 FINNDKQKMN-----ATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMAT 310
            + + + +M      +  F+        K     S HG+R   AT+    G     +   
Sbjct: 274 IVLSRENEMCNPRNISMDFTKKVNKYKDKL-PQISIHGLRHTHATLLILNGENIKIVSDR 332

Query: 311 YGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVVDSDD 347
            G   +     TYT   + ++     +  + ++  ++D
Sbjct: 333 LGHNDITTTLNTYTHIMEEMK--DNTAELLDNLFINND 368


>gi|282879691|ref|ZP_06288421.1| site-specific recombinase, phage integrase family [Prevotella
           timonensis CRIS 5C-B1]
 gi|281306360|gb|EFA98390.1| site-specific recombinase, phage integrase family [Prevotella
           timonensis CRIS 5C-B1]
          Length = 409

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/205 (18%), Positives = 65/205 (31%), Gaps = 21/205 (10%)

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-----S 187
           A    T  R+ ++  V    +       V+  K   +  +   + + ++ K+        
Sbjct: 189 ATHLKTVCRLAYREGVADGLL----FDKVKISKGNKKLPKALDRGEFEKLKTLHFEDLEE 244

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVELPDGFM 242
           E    R  F F  Y+G    D       HL  +           QKT     V+L    +
Sbjct: 245 EMETARDIFLFACYTGAAYCDLMELDKSHLVRDDEGSLWLKFNRQKTSVPCRVKLLPEAI 304

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS-AD 299
           +L+      +    +      M    +  + KA   +AG+    + H  R   AT+   +
Sbjct: 305 RLMEKLHSDERETLL----PFMGYATYQSYLKALRLRAGIPFPFTTHTARHTFATLITLE 360

Query: 300 AGATAHELMATYGWKTVDQAETYTK 324
            G     +    G   V   E Y K
Sbjct: 361 QGVPIETVSKMLGHSYVSMTERYAK 385


>gi|268611812|ref|ZP_06145539.1| phage integrase family site specific recombinase [Ruminococcus
           flavefaciens FD-1]
          Length = 366

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 57/347 (16%), Positives = 111/347 (31%), Gaps = 50/347 (14%)

Query: 24  YFRKGHGRRIRLPYPHESTFIPAYMSA----LTGSTPKREYINSPRKKPT------TLKW 73
           Y RK      R+   +++     Y S     L     K   + + R +        T++ 
Sbjct: 9   YKRKDGRFEGRVHVGYKADGSKKYRSVYGKTLAEVKEKMADLYAVRTEKNISAIRLTVRE 68

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR------ 126
              ++  SA    +  +S  ++E+  +  I+   G      +TT  I   +  +      
Sbjct: 69  AADQWL-SAARLRVKESSYANYENILNNHILPILGGEYISSLTTGRINDFIHYKLTNGRL 127

Query: 127 ----KHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
                 +  +    +T  R + ++  R+      N       PK ++        E+ ++
Sbjct: 128 KGQGGLSAKTVRDIMTVYRSVERYVYREYGIRETN----FTMPKTESGNADVLNCEERKK 183

Query: 182 FKSFWSEG-SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII------- 233
            +S+  +   +  LA    L++GLR  + C    + +     ++  ++T   +       
Sbjct: 184 LESYLIKNMDRTNLAVLLCLFTGLRIGELCGLKWEDIDFEKNTLSVKRTVQRVSRNGKSQ 243

Query: 234 -------------TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280
                        TV +P   M LL         F I N  +          FKA     
Sbjct: 244 VIIGSPKSRTSIRTVPIPIFMMALLRKFRSIDSLFVITNLSKPTEPRTMQNRFKAILKLC 303

Query: 281 GV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKG 325
           G+ N + H +R   AT+  + G     L    G          Y   
Sbjct: 304 GIRNVNFHSLRHTYATVCIEKGFDPKALSELLGHADASITLNRYVHS 350


>gi|227499698|ref|ZP_03929801.1| possible phage integrase [Anaerococcus tetradius ATCC 35098]
 gi|227218295|gb|EEI83554.1| possible phage integrase [Anaerococcus tetradius ATCC 35098]
          Length = 362

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 54/340 (15%), Positives = 102/340 (30%), Gaps = 34/340 (10%)

Query: 16  TRHGKIIYYF------RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
           T+ GK  Y F          G+ IR    +   F     +       + +    P  K  
Sbjct: 7   TKDGKTYYKFNIYLGKDPLTGKEIR---TNRQGFKSKKQAENAYLKLRTQTPTKPEIKIK 63

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           T       + ++        +       + +QI    GD   ++ T    ++ +      
Sbjct: 64  TFNDAYEIWLETWQTTVKDQSVYKIKSLFKNQITPYIGDILLKEFTQLQAQTFIIDASKR 123

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP-----WTKEDMQQFKS 184
             +        + +  +A     +  NP   ++ PK+K E         +T E+++ F  
Sbjct: 124 YKNISSINIYTKAVLNYAKDLHAIETNPFAKIKIPKQKREIKTIENRNYYTPEELKTFLE 183

Query: 185 FWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHL----------------QNNIFSIKT 226
              E  QP     F  L ++G+R  ++       L                ++    I T
Sbjct: 184 ITKETQQPQTYAFFRLLSHTGMRLGEALALEWTDLNTKTNTLTISKSISRDKDGKQIIST 243

Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-S 285
            KTG    + L       L       + +      + +  +           K  ++K +
Sbjct: 244 TKTGNTRKITLDRETTDTLIKLKKTNKKYIFERSGKMITRSYPLKILNRIIEKNNLHKIT 303

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
            HG R   ATI    G +   +    G        E Y+ 
Sbjct: 304 VHGFRHTHATILLRMGKSIKYIQERLGHADPTITLEIYSH 343


>gi|121605183|ref|YP_982512.1| phage integrase family protein [Polaromonas naphthalenivorans CJ2]
 gi|120594152|gb|ABM37591.1| phage integrase family protein [Polaromonas naphthalenivorans CJ2]
          Length = 331

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 44/327 (13%), Positives = 99/327 (30%), Gaps = 33/327 (10%)

Query: 29  HGRRIR--LPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGS 86
            G RI   LP    +       + L G+  K     +    P ++  ++  Y + A    
Sbjct: 18  GGERIHRILPQGATAGDAKRLEAELRGALIKAPRSVNIPGDP-SMSSMLGIYLEHA--KG 74

Query: 87  LAVNSRISFESY-FDQIIRKSGDFDYRKITTKHIRSGVESRK---------HTPSSAIQF 136
           L   +  +  +        K      R+     I+     +K         + P++  + 
Sbjct: 75  LRSATTSAHHALRLGPWAEKYKASQAREFAAHVIKDMGALQKGPDGKLKPAYAPATINRS 134

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196
           L + +     A     +  N  L ++      +     + + ++Q     +E +Q  +  
Sbjct: 135 LATAKKGLALAWESNLIPENYGLRIKSLSVNNKREVFLSVDQVRQITQHCTEQAQAAIWA 194

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ--KTGTIITVELPDGFMKLLAMTPIGKET 254
             L  +G R  +  +   +H++ N   +     KT     + +       L   P+    
Sbjct: 195 ALL--TGARRGEIFQIRAEHIKENEIIVPASHTKTLRSRVIPIIPALRPWLVHFPLT--- 249

Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGW 313
                    M        ++    KA +   + H +R   A+I    G   + +    G 
Sbjct: 250 ---------MTIDGVKSSWRRARVKADMEHVNFHDLRHSCASILIALGVDLYTVSKILGH 300

Query: 314 KTVDQAETYTK-GADRIRLGIKNSRRI 339
                 + Y     ++ R  +     +
Sbjct: 301 SNTQTTQRYAHLQVEQQREALNKLGML 327


>gi|312136250|ref|YP_004003587.1| integrase family protein [Methanothermus fervidus DSM 2088]
 gi|311223969|gb|ADP76825.1| integrase family protein [Methanothermus fervidus DSM 2088]
          Length = 271

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/267 (11%), Positives = 97/267 (36%), Gaps = 19/267 (7%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY---RKITTKHIRSGVESRK 127
           ++  I +        + +  +  ++    +  +R   D +    R +  +  R  V  ++
Sbjct: 5   IREAIDDLILDMEIRNYSDGTIRTYSYILNSFLRFIEDKEINKKRDLIKQMKRYLVLLKR 64

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              S   + L ++  +F+  ++   +  N   +++ PK      +  +++++++      
Sbjct: 65  KNRSERYRHLVAV--VFRNLLKTLNMDPN---NLKTPKVPKSIPKSISEKEVKRLFKAAE 119

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITV---ELPDGFM 242
           +  + ++    L  +GLR S+     ++ +   +    ++ +     +     E      
Sbjct: 120 K-LRDKVILMLLYKTGLRVSELVNLKLKDIDFTDRSIKVRGKGNKERVVFFDEECKTLLE 178

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGA 302
           K +    + ++   I+  + +    + +   K K        + H +R   AT   + G 
Sbjct: 179 KYIKNNSVNEKLIDISVRQIQRIVKKTAKKAKIKKRV-----TPHVLRHSYATHLLEKGL 233

Query: 303 TAHELMATYGWKTVDQAETYTKGADRI 329
               +    G  ++   E YTK  ++ 
Sbjct: 234 NIRYIQKLLGHSSLSTTEIYTKVTNKK 260


>gi|305663679|ref|YP_003859967.1| integrase family protein [Ignisphaera aggregans DSM 17230]
 gi|304378248|gb|ADM28087.1| integrase family protein [Ignisphaera aggregans DSM 17230]
          Length = 368

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 48/288 (16%), Positives = 94/288 (32%), Gaps = 33/288 (11%)

Query: 60  YINSPRKKPTTLKW----LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT 115
            I+  R  P T+      ++  +            +  S+ +  +      G    R IT
Sbjct: 7   RIDVGRAPPGTIDEDPRIVVERFLTVLEASGADEKTVKSYRAALNDFFSFIGWKPIRSIT 66

Query: 116 TKHIRSGV-------------ESRKHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSV 161
              +                   R+   S+   ++  +R  F+W  +  E         V
Sbjct: 67  IDDVYRWRAERLRKGFPNAKYNDRRSRESTMYYYMLFLRRFFRWLGLDIEI------PGV 120

Query: 162 ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--N 219
            RP+R    I+    E++ +  +  S      L    LL +GLR  ++       +   N
Sbjct: 121 RRPRR--REIQTLKPEEISRLFN-ASRDLMDLLILSLLLETGLRAEEALSITYGDIDLHN 177

Query: 220 NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK 279
               ++  K G    V + D  +++L+     K     +     ++ +      K+ A +
Sbjct: 178 REIRVRNAKYGEERIVFIGDLTLQVLSTITSIKP-VAPDERVIPISYSGLYKRLKSLAKR 236

Query: 280 AGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           AG++      H +R   AT +   G     L    G + +   E Y  
Sbjct: 237 AGIDPQKVRPHILRHTFATEALKKGLNIAYLQKILGHRDLKTTEIYLH 284


>gi|227431814|ref|ZP_03913841.1| bacteriophage integrase [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
 gi|227352497|gb|EEJ42696.1| bacteriophage integrase [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
          Length = 355

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/303 (13%), Positives = 95/303 (31%), Gaps = 24/303 (7%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD 110
                  ++  ++  K+   +  +  E+        L   ++  +      + ++  D  
Sbjct: 40  WAIEMENKKINDTLSKRDGIIAEMFDEWYAIFKEPLLETQTKGWYRLVSKILRKEWPDRK 99

Query: 111 YRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168
             +I +   +  V    + H  SS       +    K+AV ++++  +   +++    K+
Sbjct: 100 LSEINSSDFQKMVNEYGKNHVRSSVAHVKNILSSFIKYAVDEDFINKDFSRNIKVFSSKS 159

Query: 169 ---EGIRPWTKEDMQQFKSFWS-EGSQPRLAFEFLLYSGLRCSDSCRAGVQHL------- 217
              + ++    ++++          +         +YSG R S+                
Sbjct: 160 SKDKDLKFLENDELEMLIKEIENSAAVTSHMILLAIYSGARYSEVAALTRNDFNFTNNTI 219

Query: 218 --------QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF 269
                    +  F     KT   I ++LP  FMKL+     GK+  F +           
Sbjct: 220 NINKSWQANDQSFKATKTKTSNRI-IDLPPVFMKLVRQWTFGKKYAFESITGLPPTNAAV 278

Query: 270 SIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGAD 327
           +   +    K      + HG+R   A+           +    G   V+    TY    D
Sbjct: 279 NKQLRRYLKKNDSKLITFHGLRHTHASFLLSQDIAIQYVSERLGHADVNITLSTYAHLLD 338

Query: 328 RIR 330
           + R
Sbjct: 339 KKR 341


>gi|78189718|ref|YP_380056.1| phage/XerD family site-specific recombinase [Chlorobium
           chlorochromatii CaD3]
 gi|78171917|gb|ABB29013.1| site-specific recombinase, phage/XerD family [Chlorobium
           chlorochromatii CaD3]
          Length = 338

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/299 (13%), Positives = 86/299 (28%), Gaps = 49/299 (16%)

Query: 75  ISEYRKS-AHWGSLAVNSRISFESYFDQI------------IRKSGDFDYRKITTKHIRS 121
           I  + +  A    L+ N+ +++     Q             +R         +  +    
Sbjct: 23  IQAFLEHVAQRRGLSPNTVVAYRGDLIQFFTFLAQHLELLDLRAFQPESVTPMDVRLFMG 82

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
            +  +     S  + L +++V +++      +      S+  PK         T+E   +
Sbjct: 83  FLLEQGVKQRSIARKLVAVKVFYRYLQEHGIITTCLFSSLGSPKFPQRVPNFLTEEQTSK 142

Query: 182 FKSFWS------------------EGSQPRLA--FEFLLYSGLRCSDSCRAGVQHLQNNI 221
                                     +  R     E L  SGLR S+     +  L    
Sbjct: 143 LFELLETVPNGAVSDSQPANSALHAFTAARDCSILELLYSSGLRVSELVNLRMDELDVER 202

Query: 222 FSIKTQKTGTIITV-ELPDGFMKLLAMTPIGKETFF-INNDKQKMNATQFSI-------- 271
             +K    G    +  +    ++ L      +  FF +N + +   +   +         
Sbjct: 203 GYVKVHGKGNRERIVPVGAAAIEALKKYFEVRRNFFRMNKEVEPFTSVFVTQKGAKIYPM 262

Query: 272 -WFKAKATKAGV-----NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              +  A    +      K+ H +R   AT   ++GA    +    G   +   E YT 
Sbjct: 263 LVQRVTARHLSLVTEQKKKNPHLLRHTFATHLLNSGADLESVSEMLGHSNLATTELYTH 321


>gi|320100283|ref|YP_004175875.1| integrase family protein [Desulfurococcus mucosus DSM 2162]
 gi|319752635|gb|ADV64393.1| integrase family protein [Desulfurococcus mucosus DSM 2162]
          Length = 334

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/283 (14%), Positives = 99/283 (34%), Gaps = 34/283 (12%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT--PS 131
           ++ E++ S      +  +  ++ S     +   G    R++T K + +    R     P+
Sbjct: 22  ILEEFKVSLEASGASSETVKAYLSAVKDFLSFIGGKPLREVTLKDVVAWRNERLRNGFPN 81

Query: 132 SAIQFLTSMRVLFKWA---VRQ--EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             ++     +V   +    +++  E++ +N  + V   K+    I   + E++++  +  
Sbjct: 82  RKMEGREKWQVTLHYYTMFLKRFFEWLGLN--IGVSSVKKPPARINALSDEEIEKLMNAA 139

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELP----DG 240
                 +L    L+ +GLR  +     V+ +   + +  + + K G    V       + 
Sbjct: 140 RTPL-DKLILRLLVDTGLRSRELLGLRVEDVDFHSRVIRVSSAKYGKERYVTATGETFEM 198

Query: 241 FMKLLA--MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSAT 295
               +A      G   F +         +      K  A +AG+       H +R   AT
Sbjct: 199 LRSWIALNGLKPGDRLFNLT-------YSGLYKKLKRLAARAGIPPEKIRPHVLRHTFAT 251

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338
            +   G +   L    G   +   + Y        L I++ ++
Sbjct: 252 RALRRGLSLPSLQRLLGHADIKTTQVYLH------LSIEDLKK 288


>gi|306822894|ref|ZP_07456270.1| possible phage integrase [Bifidobacterium dentium ATCC 27679]
 gi|304553526|gb|EFM41437.1| possible phage integrase [Bifidobacterium dentium ATCC 27679]
          Length = 280

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/253 (13%), Positives = 80/253 (31%), Gaps = 39/253 (15%)

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           RK   S   Q   ++ ++F+ A+++  +  NPC   + PK  T+  +    + +++  + 
Sbjct: 27  RKSGGSYVNQIHDNITLVFQHAIKEGILVSNPCDKADPPKMDTKPKKAIHPDKVRELVAE 86

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ------------NNIFSIKTQK-TGTI 232
                    A+   +  GLR  + C      +             +N+ ++K  K    +
Sbjct: 87  LDPTDPHECAYLLAVTLGLRRGEICGLSWNDIDFERNIVDISHSYDNLGNLKGTKIKAGM 146

Query: 233 ITVELPD----GFMKLLAMTP-------------------IGKETFFINNDKQKMNATQF 269
             + L        +K+                                 +  +++ +   
Sbjct: 147 RLLPLSPVTKDALLKMKEAQAAQFAKTNSFRKPEEGYLEQTEDGPVIAGHYGERVQSGTM 206

Query: 270 SIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGW-KTVDQAETYTK-GA 326
           S W+     + G+   + H +R    T+ A  G     +        +    + YT    
Sbjct: 207 SRWWSVDRKEFGLEGYTLHELRHTYLTMLAMGGVHPKVMQELASHYSSQITMDIYTHVNM 266

Query: 327 DRIRLGIKNSRRI 339
           D  R  +    ++
Sbjct: 267 DAKRAAVDAVSKL 279


>gi|238760589|ref|ZP_04621720.1| Integrase [Yersinia aldovae ATCC 35236]
 gi|238701208|gb|EEP93794.1| Integrase [Yersinia aldovae ATCC 35236]
          Length = 345

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 47/329 (14%), Positives = 92/329 (27%), Gaps = 32/329 (9%)

Query: 18  HGKII--YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75
           +GK +  +Y      +R+R  +      +      L                   LK L+
Sbjct: 8   NGKWVCDFYSDGRDSKRVRKTFVTRGEALRFEREQLAQRGDLDIDYTLAETAAQRLKTLV 67

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-----KHTP 130
           S++         +++   +     + +    GD        +      + R        P
Sbjct: 68  SQWY---ELHGRSLSDGKARLDKLNILCDNLGDPAVADFDREVFAKYRKQRLAGEFSRKP 124

Query: 131 ----------SSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDM 179
                     ++  +    +R +F    R   +   NP   V   +     +    ++D+
Sbjct: 125 KHGIVKPPKEATVNREHAYLRAVFNELKRLGHWNHANPLDGVRLFRESENELTFLYEDDI 184

Query: 180 QQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237
           ++        S   L       L +G R S++ +     +  N  +    K+    TV +
Sbjct: 185 KRLLHECDNSSNKDLGIIVRICLATGARWSEAEQLRQAQVMPNKITYINTKSKKNRTVPI 244

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATIS 297
                KL+   P  K   F N          F              +  H +R   A+  
Sbjct: 245 STELHKLI---PKIKGRLFGNAY------DAFGQAIDRAKLVLPTGQLTHVLRHTFASHF 295

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGA 326
              G     L    G  T+     Y+  A
Sbjct: 296 MMNGGNILVLQQILGHSTIQMTMRYSHFA 324


>gi|221214609|ref|ZP_03587579.1| putative integrase [Burkholderia multivorans CGD1]
 gi|221165499|gb|EED97975.1| putative integrase [Burkholderia multivorans CGD1]
          Length = 359

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 49/347 (14%), Positives = 105/347 (30%), Gaps = 53/347 (15%)

Query: 13  KERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           +   +HG   Y  R G   R+               + L  +  +    N P     T+ 
Sbjct: 15  RVYPKHGAFYYVHRDGRWERLG--------------TDLAEAKRRGNLYNDPDSTYGTMS 60

Query: 73  WLISEY----RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE--SR 126
           + + E+     K    G L   +   ++   + +    G      +  KH+ + ++  + 
Sbjct: 61  YFLDEFVVHCEKRVQLGYLKPRTYEDYKRDVEPLKVYFGRMTPASVEPKHVGAYLDLCAE 120

Query: 127 KHTPSSAIQFLTSMRVLFKWAVR--QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
              P    +    +   F W +R  +  V +NPCL V+R K            +  ++++
Sbjct: 121 NGRPVRGNREKACLSSCFTWLIRTGKGSVKLNPCLGVKRNKETKRERYV----EHDEYRA 176

Query: 185 FWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQ---------NNIFSIKTQKTGTIIT 234
            W+  +   R   +    +  R  D    G  ++            +      KTG I+ 
Sbjct: 177 VWAVAAPQVRGLLDLTYRTLQRPEDIIAWGPANIVQKREPDGSVRRVIRNDQGKTGAIVD 236

Query: 235 VELPDGFMKLLAMTPIGKET------FFINNDKQKMNATQFSIWFKAKATKAGVNK---- 284
           + +      +L        T      +    + +  + +  +        K    +    
Sbjct: 237 IAVTPEIDAILNYLKATGPTPGPGTTWIRKRNGEPYSYSGLTSMLHRYIAKVNRARETKG 296

Query: 285 -------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
                    + ++   AT    +G     +    G  +V   E Y K
Sbjct: 297 LTPFQSFGPYDMKAKGATDMWLSGVPLERIQVLCGHDSVTTTEIYVK 343


>gi|119773459|ref|YP_926199.1| hypothetical protein Sama_0318 [Shewanella amazonensis SB2B]
 gi|119765959|gb|ABL98529.1| hypothetical protein Sama_0318 [Shewanella amazonensis SB2B]
          Length = 515

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 46/312 (14%), Positives = 91/312 (29%), Gaps = 45/312 (14%)

Query: 53  GSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYR 112
           G  PK E          T   +  +Y +   +     +       Y + + +  G+    
Sbjct: 80  GKNPKLEIKKLAAALQDTFGSVTQDYFE--GYCRTIDHPGRPRALYTNYVAKTLGELPVS 137

Query: 113 KITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170
            IT   +R  V S       ++ I  L  +  +   AV    +  N    + R K   + 
Sbjct: 138 YITRIMVRDLVNSIDAGVKRTANINVLRLIDKILDHAVELGMLETNVAKGINRKKIGAKA 197

Query: 171 ---IRPWTKEDMQQFKSFWSEG--SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225
               R  + E++    +   +       LAF  LL  G+R ++  +A             
Sbjct: 198 EPRERNLSFEEIPIVLAILRDHVSRDNYLAFILLLILGVRKNELLQAKWTEFDLEKQIWL 257

Query: 226 ----TQKTGTIITVELPDGFMKLL---------------------AMTPIGKETF----- 255
                 KT   I + +P+  M +L                      +   GK+T      
Sbjct: 258 LPNGRSKTKKSIAIAIPEPLMPILLEVKERSGSSDYLFPARRNGSNVPHTGKDTLNTALS 317

Query: 256 -FINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGW 313
                + +   +      F      AG+   + H +R+  ++  ++       +      
Sbjct: 318 KLFGKENKGKKSRPLPNIF----EAAGIPHFTVHDLRRTCSSRLSELSVPDEIIEKILNH 373

Query: 314 KTVDQAETYTKG 325
                  TY + 
Sbjct: 374 TKAGVRGTYNRY 385


>gi|326692848|ref|ZP_08229853.1| prophage Lp2 protein 2, integrase [Leuconostoc argentinum KCTC
           3773]
          Length = 355

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/277 (13%), Positives = 86/277 (31%), Gaps = 22/277 (7%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HTPSSA 133
            ++        L   ++  ++     +  K       ++T+K  +  +      H  SS 
Sbjct: 65  EDWYHVFKEPQLETATKQWYKRTLSLLKEKWDGKKLSELTSKDFQKLINDYGSDHVLSSV 124

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVER---PKRKTEGIRPWTKEDMQQFKSFWSEGS 190
                      ++AV ++++  +   +V+     K K + ++    E+M+       +  
Sbjct: 125 SHIKNITSAFIRYAVDEDFIKKDFTRNVKTYSVVKSKDKQLKFLEAEEMENLILSIKDNE 184

Query: 191 QPRLAFEF-LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT--------------V 235
                     +YSG+R S+     ++        I   K+  I                +
Sbjct: 185 AATSRMILTAIYSGMRFSEVAGLTLEDFDFEKNVINVNKSWQIHDQKFKNTKTQTSNRII 244

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSA 294
            +P  FM +      G E  F +++         +   +    K      + HG+R   A
Sbjct: 245 VMPKVFMDIAKKWTFGNEFAFESDNGTPPTDNAANKQLRRYLEKINSKIITFHGLRHTHA 304

Query: 295 TISADAGATAHELMATYGWKTVDQA-ETYTKGADRIR 330
           +           +    G   V+    TY    ++ R
Sbjct: 305 SYLLANDLAIQFVSERLGHADVNITLSTYAHLLNKKR 341


>gi|301022944|ref|ZP_07186759.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 69-1]
 gi|300397285|gb|EFJ80823.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 69-1]
          Length = 331

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 51/305 (16%), Positives = 93/305 (30%), Gaps = 22/305 (7%)

Query: 29  HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLA 88
            G+RIR           A+   +  +   +E++  P     TL  L+  +     +   +
Sbjct: 21  DGKRIR-RKFKTKGEAQAFERHVLVNYHNKEWLEKP-ADRRTLTELLGRWW---IYHGKS 75

Query: 89  VNSRISFESYFDQIIRKSGDF------DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRV 142
                        II K  +          K T    R  + +    P+S  + L  M  
Sbjct: 76  HERGNIERGRLTTIIAKFAEMGVSRADQLTKKTITDYRVVMMNDGLKPASVNRHLAIMSG 135

Query: 143 LFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201
           +F   +    Y + NP   V+R +     +   + E++ +  S          A    L 
Sbjct: 136 MFTKLIDAGEYHSHNPFREVKRLREAVTEMAFLSSEEITRLLSMLD--GDELNATLVCLS 193

Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK 261
           +G R S+      +H+ N + +    K G   T+ +      L+            N   
Sbjct: 194 TGGRWSEVSNLKAEHIINQMVTFMKTKNGKRRTIPVS---QDLIKRIKTKNSGRLFNA-- 248

Query: 262 QKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
              +  +     +         ++ H +R   AT     G     L    G   + Q  T
Sbjct: 249 ---SYYKVRNALREVKPDLPDGQAVHVLRHTFATHFIMNGGNIITLQRILGHSNIQQTMT 305

Query: 322 YTKGA 326
           Y   A
Sbjct: 306 YAHFA 310


>gi|260855846|ref|YP_003229737.1| integrase [Escherichia coli O26:H11 str. 11368]
 gi|257754495|dbj|BAI25997.1| integrase [Escherichia coli O26:H11 str. 11368]
 gi|323152673|gb|EFZ38948.1| integrase [Escherichia coli EPECa14]
          Length = 333

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/311 (13%), Positives = 90/311 (28%), Gaps = 30/311 (9%)

Query: 30  GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAV 89
           G+RIR  +  +S  +      +           S  +    L  LI+ + +     +L+ 
Sbjct: 22  GKRIRKQFATKSEALSYERRLMNSRVGDEFQDGSGPR----LSELIARWFEMYG-KTLSS 76

Query: 90  NSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-----------KHTPSSAIQFLT 138
                 +   + I  + GD    +       +  E R           K + ++  +  +
Sbjct: 77  G--AERKVKLEAICSRLGDPFASQFDKNMFATYRERRLSGEWNPKGKKKLSEATVNREQS 134

Query: 139 SMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL--A 195
            +  +F    R   +   NP   + + + + + +     +++++      E     L   
Sbjct: 135 YLHAVFAELKRLGEWSGENPLTGIRKFREEEKELAFLYVDEIERLLIACDESRNKDLGVV 194

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF 255
               L +G R S++       +     +    K     TV +      +L   P  +   
Sbjct: 195 VRIGLATGARWSEAEGLKQSQVLPGRITFVKTKGKKNRTVPISPQLQAML---PQKRGAL 251

Query: 256 FINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKT 315
           F            F    K    +    +  H +R   A+     G     L    G   
Sbjct: 252 F------SPCYEAFDAAIKRAKIELPDGQLTHVLRHTFASHFMMRGGNILVLQKILGHSD 305

Query: 316 VDQAETYTKGA 326
           +     Y   A
Sbjct: 306 IKMTMRYAHFA 316


>gi|212691988|ref|ZP_03300116.1| hypothetical protein BACDOR_01483 [Bacteroides dorei DSM 17855]
 gi|212665380|gb|EEB25952.1| hypothetical protein BACDOR_01483 [Bacteroides dorei DSM 17855]
          Length = 308

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/307 (12%), Positives = 103/307 (33%), Gaps = 38/307 (12%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFD-YRKITTKHIRSGVESRK 127
           T++ +   +R+      +  ++  ++    +  I+   G+ D   + + +       +  
Sbjct: 5   TIREIADAWREDKR-PYVKQSTFAAYMLILENHILPYFGNDDTLSEKSVQTFVLQNLNAG 63

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL-SVERPKRKT-EGIRPWTKEDMQQFKSF 185
            +  S    L  ++++ K+ V+ E+++   C   ++ P  +T + +   T  + ++   +
Sbjct: 64  MSAKSVKDILIVLKMVMKFGVKNEWMSY--CEWEIKYPSTETNKELEVLTVANHKKILDY 121

Query: 186 WSEGSQPR-LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT---------- 234
             +    R L     L +GLR  + C      +     +I  Q+T   I           
Sbjct: 122 IRQNFTFRNLGIYISLSTGLRIGEVCALRWSDIDIEAGTISVQRTIERIYVIEGDKKHTK 181

Query: 235 --------------VELPDGFMKLLAMTP--IGKETFFINNDKQKMNATQFSIWFKAKAT 278
                         + +    + ++      +  + + + N+        +  ++K    
Sbjct: 182 LVINTPKTKNSCREIPMSKELISMVKPLKKIVNTDYYVLTNEPSPTEPRTYRNYYKRLME 241

Query: 279 KAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK--GADRIRLGIK 334
           + G+ K   HG+R   AT   ++      +    G   +      Y       + R   K
Sbjct: 242 QLGIPKLKYHGLRHSFATRCIESNCDYKTVSVLLGHSNISTTLNLYVHPNMEQKKRCIAK 301

Query: 335 NSRRISS 341
             + +  
Sbjct: 302 MFKSLGK 308


>gi|149198438|ref|ZP_01875483.1| integron integrase [Lentisphaera araneosa HTCC2155]
 gi|149138444|gb|EDM26852.1| integron integrase [Lentisphaera araneosa HTCC2155]
          Length = 424

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/303 (13%), Positives = 94/303 (31%), Gaps = 57/303 (18%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
            + ++  +      ++ +  S+ S+ ++ +  S +        +   S +  R +  +S 
Sbjct: 111 YLKKFEGALRLQQKSLRTIRSYVSWAERYLAHSDNKCQETEKVRDFLSYLALRHNVAAST 170

Query: 134 -IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
             Q L ++  LFK   +++   I       R K+          E+++          Q 
Sbjct: 171 QNQALCALVSLFKCVFQKDLGDI---SGSLRSKKSERLPVVLDVEEVRSLIDVTL--GQE 225

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIIT---------------- 234
           +L  + +   GLR ++  R  ++ L       +I+  K                      
Sbjct: 226 KLMMKLIYGGGLRKNECLRLRIKDLDFKRGALNIRAGKGDKDRQTLLSPKLEGEVNAHIC 285

Query: 235 ----------------VELPDGFMKLLAMTPIGKETFFI---------------NNDKQK 263
                           V LP+  ++           F++                  +  
Sbjct: 286 EIKKLYDKDRTEGVEGVYLPNALVRKYPSASKDWNWFWLFPSPALSIDPMCKVKTIRRHH 345

Query: 264 MNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
           ++ T  S   K K  + G+ K  + H +R   AT   + G     +    G + +   + 
Sbjct: 346 LSGTGLSRVLKEKCKEVGIKKRCTVHTLRHSFATHLLERGTDLRTIQELLGHEDISTTQI 405

Query: 322 YTK 324
           YT 
Sbjct: 406 YTH 408


>gi|290770043|gb|ADD61807.1| putative protein [uncultured organism]
          Length = 372

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 54/265 (20%), Positives = 96/265 (36%), Gaps = 26/265 (9%)

Query: 84  WGSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRSGVE-----------SRKHTPS 131
           +  LA    I ++  +    R  +G   + ++     R  +E           ++K   +
Sbjct: 100 FKELADRKNIKWQHVYKHFERFVNGKCTFEEVDVDLCRKFMEYLLNAPQSIHTNQKLHIN 159

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           SA  + ++ R +   A R   +  NP   ++  +         ++E++ +      E   
Sbjct: 160 SAAGYWSAFRAVLHTAYRDRKIKENPNGFLDCIESIPTMREHLSQEELIRLAETPCEEEV 219

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQ---NNIFSIKT--QKTGTIITVELPDGFMKLLA 246
            + AF F   +GLR SD  +   Q +Q   N    + T  QKT  I+   + D    LL 
Sbjct: 220 LKRAFLFGCLTGLRKSDIKQLTWQQIQPYTNGKMFVTTRMQKTKQIVHNPISDEAYGLLG 279

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATA 304
                 E    +  K KM         K     AG+ K  + H  R    ++  + G   
Sbjct: 280 E---RCEGLIFDGFKDKM----LQGPLKRWLLAAGITKKITFHCTRHSFGSLHVEMGTDM 332

Query: 305 HELMATYGWKTVDQAETYTKGADRI 329
             + A  G K +   + Y+K A R 
Sbjct: 333 AVIQAYLGHKNITTTQIYSKMAARQ 357


>gi|261212788|ref|ZP_05927072.1| integron integrase IntI4 [Vibrio sp. RC341]
 gi|260837853|gb|EEX64530.1| integron integrase IntI4 [Vibrio sp. RC341]
          Length = 320

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/294 (14%), Positives = 85/294 (28%), Gaps = 57/294 (19%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWA 147
           A  +  ++  +  + I          +  + +   +         A +  +       + 
Sbjct: 19  AKKTIEAYLHWITRYIHFHNKKHPSLMGDQEVEEFLTYLAVQGKVATKTQSLALNSLSFL 78

Query: 148 VRQEYVAINP-CLSVE--RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGL 204
            ++  +   P  L +   R + + +     T++++++         + +L  + L  SGL
Sbjct: 79  YKE--ILKTPLSLEIRFQRSQLERKLPVVLTRDEIRRLLEVVDP--KYQLPIKLLYGSGL 134

Query: 205 RCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLAMTPIG----------- 251
           R  +  R  VQ +  +  +I+    K G   TV L       L                 
Sbjct: 135 RLMECIRLRVQDVDFDYGAIRIWQGKGGKNRTVTLAKELYPHLKEQIALVKRYYDRDLHQ 194

Query: 252 ---KETFFINN--------------------------------DKQKMNATQFSIWFKAK 276
                 +                                     +  MN T      +  
Sbjct: 195 KNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVMRRHHMNETVLQKAVRRS 254

Query: 277 ATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           A +AG+ K+   H +R   AT   + GA    +    G   V   + YT   DR
Sbjct: 255 AQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHVLDR 308


>gi|126668245|ref|ZP_01739205.1| site-specific recombinase, phage integrase family protein
           [Marinobacter sp. ELB17]
 gi|126627271|gb|EAZ97908.1| site-specific recombinase, phage integrase family protein
           [Marinobacter sp. ELB17]
          Length = 283

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 43/252 (17%), Positives = 83/252 (32%), Gaps = 17/252 (6%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYR-KITTKH--IRSGVESRKHTPSSAIQFLTSMR 141
              +  ++ S+      + R       + K+   H      V+ R  +P+S   +L  +R
Sbjct: 15  HGFSPRTQHSYLYVVTALARYYRRSPDQLKVEDLHVFFNYLVQERSLSPASCRVYLHGIR 74

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201
            L  +     +   +  L +  PKR        T++++ +  +         L       
Sbjct: 75  FL--YLKVLHWAHFDVTLVL--PKRPQRIPELLTRQEVTRLLAAVLNPKHQAL-LSVTYG 129

Query: 202 SGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDG-FMKLLAMTPIGKETFFIN 258
            GLR S++    V+ +        I+  K      V L  G    L     I     ++ 
Sbjct: 130 CGLRVSEAVALKVKDIDGERHLLRIEQGKGAKDRMVPLAPGVLQALRRYWQIRHPMLWLF 189

Query: 259 NDK----QKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYG 312
           +      + ++ T     +    T +G+ K    H +R   AT   + G   HEL    G
Sbjct: 190 SSDLLPDRHLHITTPQKVYHTAKTTSGIEKCGGIHALRHAYATHQLERGLPIHELQRLLG 249

Query: 313 WKTVDQAETYTK 324
              +   + Y  
Sbjct: 250 HSDLRSTQRYLH 261


>gi|291453463|ref|ZP_06592853.1| phage integrase [Streptomyces albus J1074]
 gi|291356412|gb|EFE83314.1| phage integrase [Streptomyces albus J1074]
          Length = 383

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 52/296 (17%), Positives = 95/296 (32%), Gaps = 35/296 (11%)

Query: 85  GSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMR 141
               +++   +E++    ++   G      +    +R  +    ++ T ++A +    +R
Sbjct: 88  PRRKLSTYDKYEAHARLYLVPLLGAKRLESLGVADVRRFIVRLEKETTAATAKESHRVLR 147

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201
                A R+E +  N    VE P+     ++PWT ++   F +  S       AF   + 
Sbjct: 148 SALSSACREELITRNVAKLVEPPRTVNRELKPWTLDETLDFLA-ASRKDPLYAAFVLAIA 206

Query: 202 SGLRCSDSCRAGVQ--HLQNNIFSIKTQ-------------KTGTIITVELPD------- 239
            GLR  +          L N +  ++ Q             K+     V LP        
Sbjct: 207 MGLRRGEIIGLRWSDLDLDNRVLYVRQQTQRRRGVLYDDDPKSRRRRAVPLPALCIAPLR 266

Query: 240 --GFMKLLAMTPIG----KETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKF 292
                +  A    G        F     +++        F   A  AG+     H  R  
Sbjct: 267 WHRMRQAAARVKAGEWQESGYVFTTRTGRQVEPRNVYRSFTRVAESAGLRVIRLHDARHG 326

Query: 293 SATISADAGATAHELMATYGWKTVDQA-ETYTKGA-DRIRLGIKNSRRISSVVDSD 346
           +AT+   AG     +M   G   +    + YT    D  R  I +  R+     S 
Sbjct: 327 TATLLTAAGVAPRVVMEILGHSQISITMDVYTHVVQDTQREAISHMDRLLKRRPSR 382


>gi|146300388|ref|YP_001194979.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
 gi|146154806|gb|ABQ05660.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
          Length = 419

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 76/221 (34%), Gaps = 10/221 (4%)

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           + ++A ++ +  +   K A    Y+ ++    ++    +       T +++        E
Sbjct: 199 SRNTAARYFSIFKAALKQAFIDGYLTVDLSSKIKGIPEQESRREYLTIKELNVLAEMPCE 258

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDGFMKL 244
               + A  F   +GLR SD  +   + +             +KT  +  + + +  ++L
Sbjct: 259 KDVLKRAALFSALTGLRHSDIQKLRWKEISLEDDMAKLHFTQKKTRGVEYMPISEQALQL 318

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302
                +  +  F +       +     W       AG+ K  + H  R   AT+   +G 
Sbjct: 319 CGEPRLPGQLVFEDLPDPSWISRPLKKWV----ESAGIKKNITFHCFRHTFATLQLSSGT 374

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343
             + +    G   V   + Y K  D  +     + ++ S+ 
Sbjct: 375 DIYTVSKMLGHTNVKTTQIYAKVIDEKKNRASQAIQLESLK 415


>gi|313148282|ref|ZP_07810475.1| phage integrase [Bacteroides fragilis 3_1_12]
 gi|313137049|gb|EFR54409.1| phage integrase [Bacteroides fragilis 3_1_12]
          Length = 413

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 51/302 (16%), Positives = 94/302 (31%), Gaps = 41/302 (13%)

Query: 71  LKWLISEYRKSAHW----GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
            K  + EY     W       +  +  S  S    +++         IT   + + +  R
Sbjct: 117 FKGFVMEYL---DWLKQCKGYSPRTIESRYSQLKTMMQTLKVDSLEDITPSILDNYICKR 173

Query: 127 KH----TPSSAIQFLTSMRVLFKWAVRQEYVAINP----CLSVERPKRKTEGIRPWTKED 178
                    +    +T +R  FK+A  +     NP     L   R               
Sbjct: 174 HDEDGCNRRTIAATVTILRGFFKYAEEKGLC--NPGLVYSLKAPRVYAHENLPSFVPYNI 231

Query: 179 MQQF----KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTI 232
           +QQ     K     G +       L   GLRCS+     ++ +   N    ++  K    
Sbjct: 232 VQQILQSKKDTAGIGVRDYAILLLLSVYGLRCSEVTNMKLKDIDWRNETLYLRRAKNCRP 291

Query: 233 ITVELPD-------GFMKLLAMTPIGKETFFINNDKQK--MNATQFSIWFKAKATKAGV- 282
             + L          ++K +      KE  F+        ++ +      K +    G+ 
Sbjct: 292 QVLPLLPIVGNAIVRYIKEVRFNKSKKEYLFLCKRAPHEQLSTSTIYNLVKKELKDKGLE 351

Query: 283 --NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
             +   H +R   AT   + G +  E+    G   +D    Y K      + IKN R+++
Sbjct: 352 LRHYGPHSLRHTCATHLINTGHSLKEIADLLGHVGLDTTRIYAK------VDIKNLRKVA 405

Query: 341 SV 342
            +
Sbjct: 406 DM 407


>gi|251777699|ref|ZP_04820619.1| phage integrase family protein [Clostridium botulinum E1 str. 'BoNT
           E Beluga']
 gi|243082014|gb|EES47904.1| phage integrase family protein [Clostridium botulinum E1 str. 'BoNT
           E Beluga']
          Length = 313

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/257 (15%), Positives = 81/257 (31%), Gaps = 25/257 (9%)

Query: 88  AVNSRIS----FESYFDQIIRKS-GDFDYRKITTKHIRSG---VESRKHTPSSAIQFLTS 139
           A N R      +   ++QI +   G    R I      +    +  +     +   +L +
Sbjct: 26  ANNYRKDSITHYYYTYNQITKIIDGKTLLRDINIDVYNTLTIKLIEKGIKNVTLKTYLKT 85

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS------QPR 193
            + +  + ++  YV        E PK   + I  ++ E+++      +  +      +  
Sbjct: 86  FKTIINYCIKNGYVEHFVM---ELPKVDQKTIETYSDEELKILLRKPNMKTCIFTEYRDW 142

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLLA----- 246
           +   FLL +G+R S      +  +  +    +I   K    + V L +  + +L      
Sbjct: 143 VIINFLLSTGVRLSSLANIKIGDIDFDTSTINITHTKNRKALIVPLNNQILTILKEYLYQ 202

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS-AHGVRKFSATISADAGATAH 305
                 E  F     + +         +      GV  +  H  R   A      G    
Sbjct: 203 RGGDKDEILFCTIWGKPLTRNSLGTAIRHYNNSRGVTTTGIHRFRHTFAKKWVLNGNNIV 262

Query: 306 ELMATYGWKTVDQAETY 322
            L    G  ++D  + Y
Sbjct: 263 ALQKILGHSSLDMTQKY 279


>gi|218694772|ref|YP_002402439.1| phage integrase [Escherichia coli 55989]
 gi|218351504|emb|CAU97213.1| phage integrase [Escherichia coli 55989]
          Length = 376

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 60/377 (15%), Positives = 115/377 (30%), Gaps = 64/377 (16%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKR-------- 58
           L P+  K   R+ K+ + +R     +       +        +       ++        
Sbjct: 14  LSPYFDK---RNNKVYWRYRHPITGKNHGLGSIDQKLAETIAAEANSRLARQQMEQMLSL 70

Query: 59  -EYINSPRKKPTTLKWLISEYRKS----AHWGSLAVNSRISFESYFDQIIRKSGDFDYRK 113
            E I S     +T+   ++ YRK        G + +N+     +       + G      
Sbjct: 71  QEKIISDTGGSSTVTIFLNNYRKIQQERYENGEIKLNTLKQKAAPLRVFDERFGTRPLDA 130

Query: 114 ITTKHIRSGVESRKHTPSSAIQ--FLTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTE 169
           IT K + S +E  K    + +   F   +  +F+ A +   V    NP  S ++P+    
Sbjct: 131 ITVKDVVSVLEEYKARGHNRMGQIFRKVLIDVFREAQQTGDVPPGFNPAESAKKPQV-RI 189

Query: 170 GIRPWTKEDMQQ-FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
             +  T ++    + +   +G   +      L +G R SD C+     +++    ++ QK
Sbjct: 190 SRQRLTFDEWMMIYNAAEKDGYFLQHGMLLALMTGQRLSDICKMQFSDIRDGYLHVEQQK 249

Query: 229 TGTIITVE-----------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265
           TGT I +                        L    +         K           + 
Sbjct: 250 TGTRIAIPLALRCDKLNLTLDDVVSSCRDCVLSPWLLHHHHAKGTAK-------RGGMVK 302

Query: 266 ATQFSIWFKAKA-------TKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
               ++ FK             G   S H  R  S  +  + G     L    G      
Sbjct: 303 PATLTVAFKKARDSVDYNWRANGTPPSFHEQRSLSERLFREQGVDTKIL---LGHSNQKM 359

Query: 319 AETY--TKGADRIRLGI 333
            + Y   +G +  +L I
Sbjct: 360 TDIYNDARGKEWKKLVI 376


>gi|323968647|gb|EGB64052.1| phage integrase [Escherichia coli M863]
          Length = 311

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/243 (15%), Positives = 76/243 (31%), Gaps = 46/243 (18%)

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             +  +   ++T++  +F++ V   Y+A NP   +   K       P ++E+  +     
Sbjct: 38  GRSAVTVNNYMTNLNAVFQFGVDNGYLADNPFKGISPLKESRTIPDPLSREEFIRLIDAC 97

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK-------------TQKTGT 231
               Q +  +   +Y+G+R  + C  G + +   N    I+                T  
Sbjct: 98  -RNQQAKNLWCVSVYTGIRPGELCALGWEDIDLKNGTMMIRRNLAKDRFTVPKTQAGTNR 156

Query: 232 IITV--ELPDGFMKLLAMTPIGKETFF--------------------------INNDKQK 263
           +I +     D     + +T + KE                             + N    
Sbjct: 157 VIHLIKPAIDALRSQMTLTRLSKEHIIDVHLREFGRTEKQKCTFVFQPEVSARVKNYGDH 216

Query: 264 MNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ET 321
                    + A   +AG+ ++ ++  R   A  S  AGA    +    G        + 
Sbjct: 217 FTVDSIRQMWDAAIKRAGLRHRKSYQSRHTYACWSLTAGANPAFIANQMGHADAQMVFQV 276

Query: 322 YTK 324
           Y K
Sbjct: 277 YGK 279


>gi|323137166|ref|ZP_08072245.1| integrase family protein [Methylocystis sp. ATCC 49242]
 gi|322397524|gb|EFY00047.1| integrase family protein [Methylocystis sp. ATCC 49242]
          Length = 336

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 44/315 (13%), Positives = 88/315 (27%), Gaps = 38/315 (12%)

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF---- 109
             P+      P   P           ++A W       R +     D   R  G F    
Sbjct: 11  KAPRPATEARPLPGPAFFSAAPQIAEEAALWLQALSGERRASRHTIDAYARDVGVFLRFL 70

Query: 110 -----------DYRKITTKHIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAI 155
                          +    +R+ +  R++      S ++ L ++R   ++  ++     
Sbjct: 71  TEHLGAKPDAAALSAMQPADLRAFLARRRNDGLESRSLLRALAAVRNFLRFLEKKGLART 130

Query: 156 NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR---------LAFEFLLYSGLRC 206
           +   +V  PKR     +  T  D +          + R              L   GLR 
Sbjct: 131 DVFGAVRAPKRPHSLPKALTVGDARDLIDPEQRAGEAREPWVLARDAAVMALLYGVGLRI 190

Query: 207 SDSCRAGVQHLQNNIFS--IKTQKTGTIITVELPDGFMKLLAMT------PIGKETFFIN 258
           S++                  T K G   T+ + +   + +          +     F+ 
Sbjct: 191 SEALSIQRADAPIGRTDRVTITGKGGKTRTLPVIEPVRRAIEAYLAICPYDLAGGPLFVG 250

Query: 259 NDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTV 316
                ++     +  +      G+    + H +R   AT     G     +    G  ++
Sbjct: 251 ARGGPLSPRIVQLAIQRLRGALGLPDSATPHALRHSFATHLLGRGGDLRTIQELLGHASL 310

Query: 317 DQAETYTKGADRIRL 331
              + YT   D+ RL
Sbjct: 311 STTQIYT-AVDKKRL 324


>gi|262166151|ref|ZP_06033888.1| putative pore-forming cytotoxin integrase [Vibrio mimicus VM223]
 gi|262025867|gb|EEY44535.1| putative pore-forming cytotoxin integrase [Vibrio mimicus VM223]
          Length = 366

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 44/300 (14%), Positives = 96/300 (32%), Gaps = 46/300 (15%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR----S 121
               +    +  +     +  +  +++   +   +++ +  G+ D R I    +R     
Sbjct: 7   SSTQSFSHYLDIFIADGEYRKVK-STKNGEQPRINRLRKIFGEEDLRSIKHSTLRMTIAG 65

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
                K+   +  + LT +R +F   +  + +  NP  +++    +     P+TK ++ +
Sbjct: 66  WHSHLKNK--TINEHLTILRFVFSTGLADQILDHNPMENIKNLLVEKTEPDPFTKIEIAR 123

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK----------TQKT 229
             +      Q + A    + +GLR S+        +   N    ++           + T
Sbjct: 124 LSNCNDVCPQVKNATALDILTGLRISELIALCWDDVDWKNKKLYVRRACVLDVYKCPKTT 183

Query: 230 GTIITVELPDGFMKLLA---------------MTPIGKET---------FFINNDKQKMN 265
            ++  V+L    + +L                +     +T         F      Q   
Sbjct: 184 DSVRDVDLNPLAISILKSQLKLMGKRRSKTVNVLQRDNKTLKQESLNFIFVNTKTNQPFT 243

Query: 266 -ATQFSIW-FKAKATKAGVNKSAHG-VRKFSATISADAGATAHELMATYGWKTVDQAETY 322
            A +F+   FK     AGV     G +R   A+    AG     L    G       + Y
Sbjct: 244 DAKEFTERFFKNYLIAAGVRHRGVGQLRHTFASQCLTAGINKEWLAHQMGHSDTKMIDRY 303


>gi|167463322|ref|ZP_02328411.1| integrase [Paenibacillus larvae subsp. larvae BRL-230010]
          Length = 407

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 46/327 (14%), Positives = 110/327 (33%), Gaps = 60/327 (18%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132
           WL SEY+ +     + +++    +     ++          IT K  +  +        S
Sbjct: 86  WL-SEYQATGT---VKISTVRIRKKGIKLLLPYLAKLRISIITAKQYQHALLDLHDKGYS 141

Query: 133 AIQFLTSM---RVLFKWAVRQEYVAINPC---------LSVERPKRKTEGIRPWTKEDMQ 180
               +++    R++F+ A+  + +  +P           ++E  + + E  +   KE++ 
Sbjct: 142 NNTIVSAHQTGRMIFQRAIELKIIKNDPTSSAVIPKRQRTIEDLETEKEIPKYMEKEELA 201

Query: 181 QFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT--------- 229
            F     E    R    F  L Y+G+R  + C      +  +  ++   KT         
Sbjct: 202 LFLQTAKEKGLDRDYAIFLTLAYTGMRVGELCALKWSDIDFSEQTVSITKTYYNPNNNIK 261

Query: 230 -----------GTIITV---ELPDGFMKLLAMTPIGKETF--------FINND------K 261
                         + +   ++ D   +L A     K  F        F+ +        
Sbjct: 262 NYTLLTPKTKSSKRVIIVDKKVLDELEQLQAEQKRIKMFFRKTYHDKNFVFSQQGEENAG 321

Query: 262 QKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
                   ++        AG+N   + H +R    ++ A+A  +  ++M   G ++ +  
Sbjct: 322 FPTYPKLVALRMTRLLKLAGLNTKLTPHSLRHTHTSLLAEARVSLEQIMQRLGHRSDETT 381

Query: 320 E-TYTKGADRIRLGIKNSRRISSVVDS 345
           +  Y       +   + S++ + ++ S
Sbjct: 382 KNIYLHVTKPKKK--EASQKFAELMSS 406


>gi|78045014|ref|YP_360522.1| prophage LambdaCh01, site-specific recombinase phage integrase
           family protein protein [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77997129|gb|ABB16028.1| prophage LambdaCh01, site-specific recombinase, phage integrase
           family [Carboxydothermus hydrogenoformans Z-2901]
          Length = 371

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 44/294 (14%), Positives = 106/294 (36%), Gaps = 36/294 (12%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE 124
            +  TLK  ++ + ++    +L+  +   +E+  +  II    + + +K+    I+    
Sbjct: 59  PEKITLKEFLNYWLENYVRPNLSPTTAYGYEAIINLHIIPFFKNIELQKVRPIDIQQYYN 118

Query: 125 SRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           S++   +  + +Q    +   F +A++ + +  NP   V+ PK K    +    ++++  
Sbjct: 119 SKRDELSGKTLLQHHRILHKAFDFAMKLQLIPNNPIDFVDSPKAKKYKAKILDLKEIKTL 178

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT----GTIITVELP 238
            +   + +   +     L  GLR  +      + +     +I+ ++     GT + ++ P
Sbjct: 179 LNALKD-TDLEVPINLALSLGLRRGELLALKWEDVNWEEGTIQIRRNLVRAGTKLILKEP 237

Query: 239 D--------------------------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIW 272
                                          +L             N+ + +N + FS  
Sbjct: 238 KSETSIRTLKLSKTLLTMLKNHRKKQIELKLMLGNEYKDTGFICCKNNGEMINPSTFSHQ 297

Query: 273 FKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
           F     K G+ +   H +R  +AT+   +   A    +  G  TV    + Y+ 
Sbjct: 298 FSDFLKKHGLPDIRLHDLRHTNATLMLKSNIPAKIASSRLGHSTVAITLDLYSH 351


>gi|168751993|ref|ZP_02777015.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC4113]
 gi|168764531|ref|ZP_02789538.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC4501]
 gi|168777970|ref|ZP_02802977.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC4196]
 gi|168784395|ref|ZP_02809402.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC4076]
 gi|168801778|ref|ZP_02826785.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC508]
 gi|195939819|ref|ZP_03085201.1| putative integrase for prophage CP-933O [Escherichia coli O157:H7
           str. EC4024]
 gi|208815141|ref|ZP_03256320.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC4045]
 gi|208818962|ref|ZP_03259282.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC4042]
 gi|209397356|ref|YP_002270249.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC4115]
 gi|209398502|ref|YP_002271466.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC4115]
 gi|217329118|ref|ZP_03445198.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. TW14588]
 gi|254792787|ref|YP_003077624.1| integrase for prophage CP-933O [Escherichia coli O157:H7 str.
           TW14359]
 gi|187766916|gb|EDU30760.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC4196]
 gi|188014066|gb|EDU52188.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC4113]
 gi|188998430|gb|EDU67437.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC4076]
 gi|189365485|gb|EDU83901.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC4501]
 gi|189376098|gb|EDU94514.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC508]
 gi|208731789|gb|EDZ80477.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC4045]
 gi|208739085|gb|EDZ86767.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC4042]
 gi|209158756|gb|ACI36189.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC4115]
 gi|209159902|gb|ACI37335.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC4115]
 gi|217317557|gb|EEC25985.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. TW14588]
 gi|254592187|gb|ACT71548.1| integrase for prophage CP-933O [Escherichia coli O157:H7 str.
           TW14359]
          Length = 376

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 60/377 (15%), Positives = 115/377 (30%), Gaps = 64/377 (16%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKR-------- 58
           L P+  K   R+ K+ + +R     +       +        +       ++        
Sbjct: 14  LSPYFDK---RNNKVYWRYRHPITGKNHGLGSIDQKLAETIAAEANSRLARQQMEQMLSL 70

Query: 59  -EYINSPRKKPTTLKWLISEYRKS----AHWGSLAVNSRISFESYFDQIIRKSGDFDYRK 113
            E I S     +T+   ++ YRK        G + +N+     +       + G      
Sbjct: 71  QEKIISDTGGSSTVTIFLNNYRKIQQERYENGEIKLNTLKQKAAPLRVFDERFGTRPLDA 130

Query: 114 ITTKHIRSGVESRKHTPSSAIQ--FLTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTE 169
           IT K + S +E  K    + +   F   +  +F+ A +   V    NP  S ++P+    
Sbjct: 131 ITVKDVVSVLEEYKARGHNRMGQIFRKVLIDVFREAQQTGDVPPGFNPAESAKKPQV-RI 189

Query: 170 GIRPWTKEDMQQ-FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
             +  T ++    + +   +G   +      L +G R SD C+     +++    ++ QK
Sbjct: 190 SRQRLTFDEWMMIYNAAEKDGYFLQRGMLLALMTGQRLSDICKMQFSDIRDGYLHVEQQK 249

Query: 229 TGTIITVE-----------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265
           TGT I +                        L    +         K           + 
Sbjct: 250 TGTRIAIPLALRCDKLNLTLDDVVSSCRDCVLSPWLLHHHHAKGTAK-------RGGMVK 302

Query: 266 ATQFSIWFKAKA-------TKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
               ++ FK             G   S H  R  S  +  + G     L    G      
Sbjct: 303 PATLTVAFKKARDSVDYNWRANGTPPSFHEQRSLSERLFREQGVDTKIL---LGHSNQKM 359

Query: 319 AETY--TKGADRIRLGI 333
            + Y   +G +  +L I
Sbjct: 360 IDIYNDARGKEWKKLVI 376


>gi|124008268|ref|ZP_01692964.1| transposase, putative [Microscilla marina ATCC 23134]
 gi|123986217|gb|EAY26046.1| transposase, putative [Microscilla marina ATCC 23134]
          Length = 415

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 45/269 (16%), Positives = 88/269 (32%), Gaps = 30/269 (11%)

Query: 85  GSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSG--------VESRKHTPSSAI 134
            S    +        + +  + G  D     + T+  R          +  +K++   A 
Sbjct: 133 KSTKETTTYRARRIQEFLQDEYGIKDLPISGLLTQEYRGMGKKLNDWCLYRKKYSNDVAR 192

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCL-SVERPKRKTEGIRPWTKEDMQQFKSFW----SEG 189
             L  ++ +   AV    +  NP   + +  K   E       +++ + +       S  
Sbjct: 193 LTLVLLKNIATEAVDLGVIEHNPINYNFKAIKEHKEQKESLILQEVLKIEKHVIDSKSAL 252

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHL-----QNNIFSIKTQKTGTIITVELPDGFMKL 244
            + R  F F  ++GL   D+       L     + N    K QKT  +  V +      +
Sbjct: 253 YRVRDCFLFQCFTGLAYIDTYNLNGDDLLVGVDKRNWIVKKRQKTKVVAKVPIIKSAQDI 312

Query: 245 LAMTPIGKETFFINNDKQKM----NATQFSIWFKAKATKAGVNK--SAHGVRKFSATISA 298
           L         +    D + +    + + ++ + K    + G++K  S+H  R   A I  
Sbjct: 313 LDRYAHNIGKY----DGRLLPVYASNSAYNKYIKKLMKEVGIDKKISSHSARFTFAEILR 368

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGAD 327
            +GA    +    G       E Y K  D
Sbjct: 369 TSGAALDNIKDVLGHSEKKMTEHYAKMTD 397


>gi|84514470|ref|ZP_01001834.1| tyrosine recombinase [Loktanella vestfoldensis SKA53]
 gi|84511521|gb|EAQ07974.1| tyrosine recombinase [Loktanella vestfoldensis SKA53]
          Length = 306

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 40/266 (15%), Positives = 89/266 (33%), Gaps = 27/266 (10%)

Query: 85  GSLAVNSRISFES----YFDQIIRKSGDF----DYRKITTKHIRSGVESRKHTPSSAI-- 134
             +A N+ +++ +    +   + + +GD        ++T   +R+ +   +    +A   
Sbjct: 23  AGVAENTIVAYRADVLGFMAFLTQHNGDTQGLGPLARVTLSDMRAWMAHERGRGVAARSL 82

Query: 135 -QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK----EDMQQ--FKSFWS 187
            + L++++  ++W   +E       LS   PK + +  RP +     + + Q   ++   
Sbjct: 83  ARSLSAVKSFYRWLAAREGFEPTAVLSTRAPKFQPKLPRPLSAPAASDMIDQIGLQACDP 142

Query: 188 -EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
              ++       L   GLR S++     +          T K G    V + D     +A
Sbjct: 143 WVAARDTAVVTLLYGCGLRISEALSLQGRDAPLPPVLRITGKGGKQRIVPVLDIARDAVA 202

Query: 247 M-------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATIS 297
                           F       +         +    + G+  +A  H +R   AT  
Sbjct: 203 GYLRLCPYEQAADAPLFRAIRGGPLAPRAIQKVVEQTRLQLGLPGTATPHALRHSFATHL 262

Query: 298 ADAGATAHELMATYGWKTVDQAETYT 323
             AG     +    G  ++   + YT
Sbjct: 263 MAAGGDLRCIQELLGHASLSTTQAYT 288


>gi|148358224|ref|YP_001249431.1| integrase [Legionella pneumophila str. Corby]
 gi|296105578|ref|YP_003617278.1| hypothetical protein lpa_00108 [Legionella pneumophila 2300/99
           Alcoy]
 gi|148279997|gb|ABQ54085.1| integrase, phage related [Legionella pneumophila str. Corby]
 gi|295647479|gb|ADG23326.1| hypothetical protein lpa_00108 [Legionella pneumophila 2300/99
           Alcoy]
          Length = 407

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 56/299 (18%), Positives = 102/299 (34%), Gaps = 32/299 (10%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDF 109
             G  PK        +   T+  L   +    ++    V   +  +   D  II   G  
Sbjct: 77  REGVDPKTVIQAQEEQDNNTVDKLALNWYT--NYIEKHVKRPLVIKRQIDNDIIPLLGKK 134

Query: 110 DYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL-------- 159
               + TK I   +++  ++     A + L+S++ +F +AV + Y   NP          
Sbjct: 135 KLDDVQTKDISDALDTIVKRGARILANRTLSSIKQMFNYAVSRGYTQFNPASNIRSRDIG 194

Query: 160 SVERPKRKTEGIRPWTKEDMQQFKSFWSEG-----SQPRLAFEFLLYSGLRCSDSCRAGV 214
            +E+PK      R  T E+++    F         +Q R+A + LL +G+R  +   A  
Sbjct: 195 GIEKPKE-----RVLTLEEIKALWLFLDSDLTQMSTQTRIAIKLLLLTGVRTVELRLASW 249

Query: 215 QHLQNNIFSIKT----QKTGTIITVELPDGFMKL-LAMTPIGKETFFIN--NDKQKMNAT 267
             +              K   I  V L      L L + P+    + +   +    +   
Sbjct: 250 HEIDFEASLWTIPALHSKASIIHKVHLSKLAKSLFLQLKPLSHSDYVLTGVDGFHPITEN 309

Query: 268 QFSIWFKAKATKAGV-NKSAHGVRKFSATISADA-GATAHELMATYGWKTVDQAETYTK 324
                 K    K G+ + +AH +R+  AT   +        +    G K      TY +
Sbjct: 310 ALPRAIKRIQEKLGIPDWTAHDLRRTFATQLGETLQIDPVVIEKCLGHKMPRIMATYNR 368


>gi|309808625|ref|ZP_07702517.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 01V1-a]
 gi|309809486|ref|ZP_07703344.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners SPIN 2503V10-D]
 gi|308168099|gb|EFO70225.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 01V1-a]
 gi|308170158|gb|EFO72193.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners SPIN 2503V10-D]
          Length = 373

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 65/363 (17%), Positives = 121/363 (33%), Gaps = 36/363 (9%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHE--STFIPAYMSALTGSTPKREYINS-PR 65
             V K  T+ G I Y F+   G  I         S F     +       K E ++S  +
Sbjct: 6   KRVEKYETKKG-IRYRFKTYVGTDINGKKIWATRSGFTSYTEAKYELDKLKLEGVDSFVK 64

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
           +K   +  L +++  +         +  ++E Y   I  K G+    KIT   ++    +
Sbjct: 65  QKQIKVNDLFTQWFDTYQTTVKESTAHKTYEMYKIHIKPKYGNAYVDKITPASLQRFSNA 124

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-----PWTKEDMQ 180
                      L  +       +   Y+ +NP   +  PK+ T   R       ++E++ 
Sbjct: 125 LSKKLVKYRTALGILERTLNLGISLGYLKVNPFSKILIPKKTTRKRRDTSINFLSREELD 184

Query: 181 QFKSFW-SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT---------- 229
            F     S      L F  L  +GLR  ++       +  N   I   KT          
Sbjct: 185 TFLKKAESINHLYYLFFLLLASTGLRKGEALALHWSDIDFNTNQISVTKTLAYGLDNKYI 244

Query: 230 -------GTIITVELP----DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF-KAKA 277
                   ++ TV L     +  +K      I  E  F   D   +  ++ + W      
Sbjct: 245 VQTPKSPKSLRTVPLSTHLKEELLKYKDNQKIDTEIIFHTIDGNYLRLSKPTRWLDTIYK 304

Query: 278 TKAGVNK-SAHGVRKFSATISADAG--ATAHELMATYGWKTVDQA-ETYTKGADRIRLGI 333
               + + + HG R   A++  ++       ++ A  G +TV+     YT   ++ +  +
Sbjct: 305 QLPDLKRITTHGFRHTFASLLIESNPYIKPSDVQAILGHETVEMTLNIYTHVTNQSKKKV 364

Query: 334 KNS 336
             S
Sbjct: 365 AQS 367


>gi|307287810|ref|ZP_07567848.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0109]
 gi|306501198|gb|EFM70503.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0109]
          Length = 378

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 59/361 (16%), Positives = 118/361 (32%), Gaps = 50/361 (13%)

Query: 18  HGKIIYYFRKGHG---RRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR-KKPTTLKW 73
           +GK  Y+ R       +  R+     S    A   A+     K       + +K  +L+ 
Sbjct: 8   NGKYKYFERYKDPYTEKYRRVSVTLNSKSNQAKKQAMMELQDKINNRMEKKDQKKVSLEN 67

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG-DFDYRKITTKHIRSGVESRKHTPSS 132
           L++ + +     S+   S  ++      I      D   R   TK  +  +    H+   
Sbjct: 68  LLNSWWQQHQ-LSIRKTSVKAYGKILKYIFSNMNVDVLIRNTDTKFFQDFINDLPHSWEY 126

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVE--RPKRKTEGIR-----PWTKEDMQQFKSF 185
             +F + + + F +A     +  NP   V+  +P    E           + ++ Q  ++
Sbjct: 127 KKKFKSVLNMSFTYAQDMGMIDENPINRVKVVKPPLTKENFENIESKYLEEREVYQLLNY 186

Query: 186 WSEG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------------ 229
           +          RLA EF+  +GLR  ++    +     N  +I    T            
Sbjct: 187 YYSTFQSVHHGRLA-EFMYLTGLRAGEAISLTINDYVKNEHAILVNGTLDYSNGYKNATK 245

Query: 230 ------GTIITVELPDGFMKLLAMTPIGKE--------TFFINNDKQKMNATQFSIWFKA 275
                  +   VEL +  +K++    + +E          F+    + +    F+   K 
Sbjct: 246 ELPKTLASFRKVELSNRAVKIIEELILEREIKFKEQTNYLFVGKTGKPIQVNSFNASLKK 305

Query: 276 KATKAGVNK-----SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRI 329
                G NK     S+H  R    ++ A+       +M   G    +   + YT    + 
Sbjct: 306 ANESLGKNKINKTISSHIFRHSHISLLAELNVPVKAIMERVGHVDTETTLKIYTHVTKKA 365

Query: 330 R 330
           +
Sbjct: 366 K 366


>gi|291439566|ref|ZP_06578956.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
 gi|291342461|gb|EFE69417.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
          Length = 457

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 67/392 (17%), Positives = 119/392 (30%), Gaps = 67/392 (17%)

Query: 14  ERTRHG-KIIYYFRK--GHGRRIRLPYPH-ESTFIPAYMSALTGSTPKREYINSPRKKPT 69
           +  RHG  + Y  R     G      +P  +     A+++ +     + +YI+ PR    
Sbjct: 61  KTERHGLGLRYRARYIGPDGTEKSKSFPDKQKRLADAWLTNIEADMARGQYID-PRAARI 119

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           T +     +  +     L   + +        +    G         +HIR      +  
Sbjct: 120 TFREYTDRWLAALT-TDLTSRAAVEGRLRLHAL-PYLGTRPIGSFQPEHIRDWNRQLEDA 177

Query: 130 PSSAIQ---FLTSMRVLFKWAVRQEYVAINPCL--SVERPKRKTEGIRPWTKEDMQQFKS 184
            +SA        ++  +   AV    +A NPC   SV+ P+     + PW+ E +  F  
Sbjct: 178 VASAQYRRLIFDAVSSVLNAAVDDRLLASNPCRVRSVKAPRPAPSRVHPWSAEQV--FDV 235

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQ-------------KTG 230
                 + R   +     GLR  +     V ++ +     ++ Q             K G
Sbjct: 236 RAGLPERYRAMVDLGAGCGLRQGEIFGLAVDNIGDLGWLYVRQQVKKVRGTLVFAPPKRG 295

Query: 231 TIITVEL----PDGFMKLLAMTPIGKETF-FINNDKQKMN-------ATQFSIW------ 272
            +  V L         + +A  P    T  ++     K+         +  +IW      
Sbjct: 296 KLRDVPLDLEVSAALREHMAAFPPVDVTLPWLTPTGPKVTHRLLFTSGSGAAIWSQAFND 355

Query: 273 --FKAKATKAGV--------------NKSAHGVRKFSATISADAGATAHELMATYGWKTV 316
             +K     AG+                  H +R F A++  DAG +   L    G    
Sbjct: 356 RAWKPALASAGIIPAPGKGERYAAAREHGMHALRHFYASVLLDAGESIKALSLYLGHSDP 415

Query: 317 D-QAETYTK----GADRIRLGIKNSRRISSVV 343
                 YT        R R  I    R +   
Sbjct: 416 GFTLRVYTHLMPSSETRTRKAISAMYRAAGHA 447


>gi|258651476|ref|YP_003200632.1| integrase [Nakamurella multipartita DSM 44233]
 gi|258652719|ref|YP_003201875.1| integrase [Nakamurella multipartita DSM 44233]
 gi|258554701|gb|ACV77643.1| integrase family protein [Nakamurella multipartita DSM 44233]
 gi|258555944|gb|ACV78886.1| integrase family protein [Nakamurella multipartita DSM 44233]
          Length = 617

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/184 (20%), Positives = 60/184 (32%), Gaps = 12/184 (6%)

Query: 157 PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGV 214
           P  S +RP +     R        +F +   E   P  RLA E L  +G+R  +      
Sbjct: 322 PVFSSDRPAKDKPLPRFLDDAATAKFMAAARELPDPFGRLAIEILARTGMRKGELLGLTT 381

Query: 215 QHL----QNNIFSIKTQKTGTIITVELPDGFMKLLA-----MTPIGKETFFINNDKQKMN 265
             +          I   K      V L      ++                  +  + + 
Sbjct: 382 DAVVQIGSAYWLRIPVGKLHNDRYVPLHPQLKTMIDNWLEQRPDWQNSHLLFTDRGRPIP 441

Query: 266 ATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            T+     +  AT AG+     H +R   AT + + G +   + A  G KT+     Y +
Sbjct: 442 PTRVDHAVQTAATAAGIGHVHPHQLRHTLATQAINRGMSLEAIAALLGHKTMSMTLVYAR 501

Query: 325 GADR 328
            ADR
Sbjct: 502 IADR 505


>gi|150008734|ref|YP_001303477.1| integrase [Parabacteroides distasonis ATCC 8503]
 gi|149937158|gb|ABR43855.1| integrase [Parabacteroides distasonis ATCC 8503]
          Length = 368

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 44/242 (18%), Positives = 89/242 (36%), Gaps = 19/242 (7%)

Query: 101 QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
           ++  K  D+  +     H  + +       +SA  + ++ R L K A +++ +  N    
Sbjct: 134 ELCEKFRDYLLKCKQINHPNAYISR-----NSAAGYYSTFRALLKIAYKEKMLRENLNDF 188

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220
           +E+ + K       T +++++  +   +    + A  F   +GLR SD  +   +  +  
Sbjct: 189 LEKIEWKEVKKEYLTLDEVKKLAATPCKIPVLKQASLFACMTGLRISDILKLDWRDFEVG 248

Query: 221 -----IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKA 275
                   I T+KT T  T+ +    ++L      GK   F     + +  +      K 
Sbjct: 249 PDQGYYIRICTEKTETEATLPISQEALELCGEWSTGK--VF-----KGLTRSMTHHPLKQ 301

Query: 276 KATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
             T+AG+ K  + H  R   A I    G   + +      K V   + Y    +  +   
Sbjct: 302 WITEAGIRKHITFHCFRHSYAVIQISLGTDIYTVSKMLTHKNVTTTQIYADLVNSKKRET 361

Query: 334 KN 335
            N
Sbjct: 362 AN 363


>gi|15802318|ref|NP_288344.1| integrase for prophage CP-933T [Escherichia coli O157:H7 EDL933]
 gi|15831871|ref|NP_310644.1| integrase [Escherichia coli O157:H7 str. Sakai]
 gi|187776266|ref|ZP_02801548.2| integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           EC4196]
 gi|188024649|ref|ZP_02772961.2| integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           EC4113]
 gi|189404109|ref|ZP_02787302.2| integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           EC4501]
 gi|189406250|ref|ZP_02827228.2| integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           EC508]
 gi|194430421|ref|ZP_03062905.1| integrase for prophage CP-933T [Escherichia coli B171]
 gi|208810345|ref|ZP_03252221.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           EC4206]
 gi|208816796|ref|ZP_03257916.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           EC4045]
 gi|208819521|ref|ZP_03259841.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           EC4042]
 gi|209395701|ref|YP_002270994.1| integrase family protein [Escherichia coli O157:H7 str. EC4115]
 gi|217328885|ref|ZP_03444966.1| integrase family protein [Escherichia coli O157:H7 str. TW14588]
 gi|254793532|ref|YP_003078369.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           TW14359]
 gi|331683415|ref|ZP_08384016.1| integrase [Escherichia coli H299]
 gi|12515975|gb|AAG56898.1|AE005412_8 integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           EDL933]
 gi|13362085|dbj|BAB36040.1| putative integrase [Escherichia coli O157:H7 str. Sakai]
 gi|187768066|gb|EDU31910.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           EC4196]
 gi|188017419|gb|EDU55541.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           EC4113]
 gi|189367364|gb|EDU85780.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           EC4501]
 gi|189375751|gb|EDU94167.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           EC508]
 gi|194411527|gb|EDX27865.1| integrase for prophage CP-933T [Escherichia coli B171]
 gi|195182940|dbj|BAG66506.1| putative integrase [Escherichia coli O111:H-]
 gi|208724861|gb|EDZ74568.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           EC4206]
 gi|208731139|gb|EDZ79828.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           EC4045]
 gi|208739644|gb|EDZ87326.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           EC4042]
 gi|209157101|gb|ACI34534.1| integrase family protein [Escherichia coli O157:H7 str. EC4115]
 gi|217318232|gb|EEC26659.1| integrase family protein [Escherichia coli O157:H7 str. TW14588]
 gi|254592932|gb|ACT72293.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           TW14359]
 gi|309702157|emb|CBJ01472.1| phage integrase [Escherichia coli ETEC H10407]
 gi|323180706|gb|EFZ66251.1| integrase [Escherichia coli 1180]
 gi|326342290|gb|EGD66071.1| Integrase [Escherichia coli O157:H7 str. 1044]
 gi|326343839|gb|EGD67601.1| Integrase [Escherichia coli O157:H7 str. 1125]
 gi|331079630|gb|EGI50827.1| integrase [Escherichia coli H299]
          Length = 333

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/311 (13%), Positives = 90/311 (28%), Gaps = 30/311 (9%)

Query: 30  GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAV 89
           G+RIR  +  +S  +      +           S  +    L  LI+ + +     +L+ 
Sbjct: 22  GKRIRKQFATKSEALSYERRLMNSRVGDEFQDGSGPR----LSELIARWFEMYG-KTLSS 76

Query: 90  NSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-----------KHTPSSAIQFLT 138
                 +   + I  + GD    +       +  E R           K + ++  +  +
Sbjct: 77  G--AERKVKLEAICSRLGDPFASQFDKNMFATYRERRLSGEWNPKGKKKLSEATVNREQS 134

Query: 139 SMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL--A 195
            +  +F    R   +   NP   + + + + + +     +++++      E     L   
Sbjct: 135 YLHAVFAELKRLGEWSGENPLTGIRKFREEEKELAFLYVDEIERLLIACDESRNKDLGVV 194

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF 255
               L +G R S++       +     +    K     TV +      +L   P  +   
Sbjct: 195 VRIGLATGARWSEAEGLKQSQVLPGRITFVKTKGKKNRTVPISPQLQAML---PKKRGAL 251

Query: 256 FINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKT 315
           F            F    K    +    +  H +R   A+     G     L    G   
Sbjct: 252 F------SPCYEAFDAAIKRAKIELPDGQLTHVLRHTFASHFMMRGGNILVLQKILGHSD 305

Query: 316 VDQAETYTKGA 326
           +     Y   A
Sbjct: 306 IKMTMRYAHFA 316


>gi|28866934|gb|AAM95157.1| site-specific recombinase IntIA [Listonella anguillarum]
          Length = 320

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 47/309 (15%), Positives = 101/309 (32%), Gaps = 64/309 (20%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
           I EY ++ H+   A  +  ++  +  + I  +      ++ +K +   +         A 
Sbjct: 9   IKEYMQARHY---AKKTIEAYLHWITRFIYFNNKTHPMRMGSKEVEMFLTDLAVNGKVAA 65

Query: 135 QF----LTSMRVLFKWAVRQEY-VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
           +     L S+  L++  +++   +++N     ++ +   +     T+ ++++F       
Sbjct: 66  KTQALALNSLHFLYREIIKEPLSISMN----FKKSQLAQKLPVVMTRTEIKRFLEHIEP- 120

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLAM 247
            + +L    L  SGLR  +  R  +Q +  +  +++    K G   TV L       LA 
Sbjct: 121 -RYQLQIMLLYGSGLRLMECVRLRIQDIDLDYGAVRVWQGKGGKNRTVTLAKELYPQLAE 179

Query: 248 TPIGKETF---------------------------------------FIN-------NDK 261
                + +                                        +          +
Sbjct: 180 QQALAKRYYDKDMQTKGYGGVWLPNALREKYPSAPYEFNWHYLFPSNLLTLDENSGLKRR 239

Query: 262 QKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQA 319
             +N +      +  A  A + KS   H +R   AT   +AGA    +    G   V   
Sbjct: 240 HHINESALQRAVRKTAHDAEIQKSVSCHTLRHSFATHLLEAGADIRTVQEQLGHSDVKTT 299

Query: 320 ETYTKGADR 328
           + YT   DR
Sbjct: 300 QIYTHVLDR 308


>gi|331084863|ref|ZP_08333951.1| hypothetical protein HMPREF0987_00254 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330410957|gb|EGG90379.1| hypothetical protein HMPREF0987_00254 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 354

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 57/345 (16%), Positives = 115/345 (33%), Gaps = 52/345 (15%)

Query: 32  RIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS---EYR--KSAHWG- 85
           R+R        F   Y  A+  +T  +  I+      T   +L+     YR   +  +  
Sbjct: 19  RLREILTTLPAFAKDYFRAMEPTTSAKTRISYAYDIRTFFYFLVECNPLYRDRSTTQFTL 78

Query: 86  -SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLF 144
             L   S +  E Y + + +     + ++IT  +   G+  +          ++++R  +
Sbjct: 79  EDLDQLSSVDIEEYLEYL-KVYESSENKQIT--NSEQGLARK----------MSALRSFY 125

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF--------------KSFWSEGS 190
            +  +++ +  NP L V+ PK   + I     +++                 K  + E +
Sbjct: 126 GYFFKRQAIEKNPTLLVDMPKLHEKAIIRLDTDEVAILLDYIETCGNQLTGQKKVYYEKT 185

Query: 191 QPR--LAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLA- 246
           + R       LL +G+R S+     +  +   N     T+K G  + V       K L  
Sbjct: 186 KYRDLAIITLLLGTGIRVSECVGLDINDVDFKNNGVKVTRKGGNEMVVYFGREVEKALRD 245

Query: 247 ----------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSA 294
                       P  +   F++  +++M         K  A +   NK  + H +R    
Sbjct: 246 YLELTRKNITPLPDHENALFLSTQRKRMGVQAVENMVKKYAKQVTPNKKITPHKLRSTYG 305

Query: 295 TISADAGATAHELMATYGWKTVDQA-ETYTK-GADRIRLGIKNSR 337
           T         + +    G K V+   + Y      R R      +
Sbjct: 306 TSLYKETGDIYLVADVLGHKDVNTTKKHYAAIDESRRRQAASAVK 350


>gi|315608606|ref|ZP_07883589.1| conserved hypothetical protein [Prevotella buccae ATCC 33574]
 gi|315249709|gb|EFU29715.1| conserved hypothetical protein [Prevotella buccae ATCC 33574]
          Length = 410

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/305 (12%), Positives = 86/305 (28%), Gaps = 27/305 (8%)

Query: 41  STFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD 100
           + F+       TG   +R            +   + ++            +  +      
Sbjct: 82  TEFMQ------TGIIRRRIVKLHEFPLDGEIGNAVLQHLDFLREQRRCEPTIHNHRRLLS 135

Query: 101 QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
             I          I     +  VE   H  +   +   ++R    +   +   + N    
Sbjct: 136 YFIAGLSQKGIDSICGITEKVIVEFVDHAQTCKSEHFYAIRQFCSFLYERGMTSTNLSYV 195

Query: 161 VER--PKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGV 214
           + R    +  +    ++ ++++Q +       + G +    F      GLR SD      
Sbjct: 196 LTRSNFPQHEKLPSVYSCDEIKQIEGSIEQSSAVGKRDYAIFLLASRLGLRVSDIASLTW 255

Query: 215 QHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG-------KETFFI-NNDKQKM 264
            ++   N   ++   KT   + + L     + L             KE F   +   + M
Sbjct: 256 DNIDWDNGKITLYQYKTKAPMELPLLREIGEALVTYARDSRPKSHLKEVFLTASAPYRPM 315

Query: 265 NATQFSIWFKAKATKAGVNKS-----AHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
                +         +G++ S      H +R   A+     G +   +    G ++    
Sbjct: 316 TRISLNGVITRIMQSSGIDISSRRFGPHSMRHSLASNMLRQGTSLPVISGILGHESTQTT 375

Query: 320 ETYTK 324
             Y +
Sbjct: 376 MEYLR 380


>gi|307822019|ref|ZP_07652251.1| integrase family protein [Methylobacter tundripaludum SV96]
 gi|307736585|gb|EFO07430.1| integrase family protein [Methylobacter tundripaludum SV96]
          Length = 382

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 45/308 (14%), Positives = 87/308 (28%), Gaps = 70/308 (22%)

Query: 88  AVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVESRKHT---PSSAIQFLTSMRV 142
           +  +  ++ ++  +     +S D  +  +   H  +  +S        S+  Q L+++  
Sbjct: 50  SAKTWQTYGNHLYEFFGFLESNDLRWDNVNQTHFAAWRDSMLTRGCVRSTVNQRLSAVSN 109

Query: 143 LFKWAVRQEYVAIN------------PCLSVER--------------PKRKTEGIRPWTK 176
            ++WA+R      N            P   +                 +      R    
Sbjct: 110 FYRWALRDGL-THNLPFQTQEVWIAKPAGFLAHVDAKGNRFQANELTLRTAKGLPRFLLT 168

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRA-------GVQHLQNNIFS------ 223
           E  +QF +  S   + RL    +   GLR  +              H             
Sbjct: 169 EQAKQFVATLS-PWRNRLMAYLMWLCGLRREEVTALNMRVLPNPSGHAPGKGLRMMLDAK 227

Query: 224 IKTQKTGTIITVELP---------------DGFMKLLAMTPIGKET--FFINNDKQKMNA 266
           I   K      V +P                   KL        ET   F+      ++ 
Sbjct: 228 ITPTKGSKTRWVLVPYDLVVQLWDYMVFERPRLTKLYQNKHGKDETDLLFLTEYGNPISL 287

Query: 267 TQFSIWFKAKATKAGVNKSAHGVRKFSAT----ISADAGATA---HELMATYGWKTVDQA 319
              +  F+  + K+GV  + H +R    T      ++  ++    H +    G  +    
Sbjct: 288 EGMNNTFRKASEKSGVKCTPHMLRHTFGTYEFLRMSEHKSSDGALHWVRDRMGHSSSSIT 347

Query: 320 ETYTKGAD 327
           E Y   AD
Sbjct: 348 EVYIHAAD 355


>gi|309812717|ref|ZP_07706461.1| site-specific recombinase, phage integrase family [Dermacoccus sp.
           Ellin185]
 gi|308433412|gb|EFP57300.1| site-specific recombinase, phage integrase family [Dermacoccus sp.
           Ellin185]
          Length = 388

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 43/325 (13%), Positives = 95/325 (29%), Gaps = 25/325 (7%)

Query: 15  RTRHG---KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
             R+G   +    +R+  G +              ++           +++ P ++  T+
Sbjct: 21  TDRYGVGLRYRARYRREKGGKQFSKGFATKREAKEWLQLKASEIHTGTWVD-PARERMTV 79

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
                 +   A + S   ++    E++   I    GD   R +    + + V + +    
Sbjct: 80  GEWCETWL--AGYSSRKASTYRQAETHVKIIRATFGDVPVRSVKPSDVNAWVATMQRDGR 137

Query: 132 SAIQFLTSMR---VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           +      + R    +   AV    +  +PC     P +  +     T   +      + E
Sbjct: 138 AQSYVYATYRRFAQIMGDAVHDGLIHRSPCSRRTAPSQGEQRPYVATSAQVWALHDKFPE 197

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ--------KTG-TIITVELPD 239
             +P  A     ++GLR ++        +      +           KT  +   V +P+
Sbjct: 198 HLRP--AVLLAAFAGLRLAECAGLRAADVDFMRGIVTPAVQYPAEPLKTDYSRTPVPIPN 255

Query: 240 GFMKLLAMTPIGK--ETFFINNDKQKMNATQFSIWFKAKA---TKAGVNKSAHGVRKFSA 294
               +LA    G   E    N   ++          +               H +R + A
Sbjct: 256 DLSLMLAKAVEGGAGEYVVTNEIGRQATPWAIERAMREVRGSVEDLPEGFRFHDLRHYYA 315

Query: 295 TISADAGATAHELMATYGWKTVDQA 319
           ++   AG     + A    K     
Sbjct: 316 SLLISAGLDVKIVQARMRHKNATTT 340


>gi|294671354|ref|ZP_06736205.1| hypothetical protein NEIELOOT_03063 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291306986|gb|EFE48229.1| hypothetical protein NEIELOOT_03063 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 232

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/227 (16%), Positives = 69/227 (30%), Gaps = 15/227 (6%)

Query: 111 YRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI-NPCLSVERPKRKTE 169
             +I  +HI   +E RK++P +A   +      +  A    Y    NP   V+R  +K  
Sbjct: 1   MDEIQPQHIARYLEWRKNSPVAANNDIQWFTAAWNQARSWGYTEKANPAAGVKRHTQKPR 60

Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229
            +     +D      + +  S  R   +    +G R  D        + + I  I  +KT
Sbjct: 61  NVYI---DDRLYGIVYQAADSLMRDLMDTAYITGQRPIDIVGLHTDQIHDGILHITQRKT 117

Query: 230 GTIITVELPDGFMKLL-AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---- 284
              +  E+     +++    P      F N+   ++        F A   +         
Sbjct: 118 KARLRFEISGLLAEIIGRRAPEDGGYLFKNSRGGRLTRDVLGRHFLALRKQLQTEHPELA 177

Query: 285 ------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
                     +R  S T +       +      G  T      Y + 
Sbjct: 178 EELANFQFRDLRAKSGTDAYLMTGDKNAARQQLGHTTEAMTNRYIRQ 224


>gi|187922278|ref|YP_001893920.1| integrase family protein [Burkholderia phytofirmans PsJN]
 gi|187713472|gb|ACD14696.1| integrase family protein [Burkholderia phytofirmans PsJN]
          Length = 405

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/311 (13%), Positives = 91/311 (29%), Gaps = 21/311 (6%)

Query: 25  FRKGHGRRIRLPYPHES-TFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAH 83
            + G     RL           A+   +     +       RK    L  L+  + +   
Sbjct: 14  VQPGGRGAKRLKKTFAKKADAEAWKRHVQAKVQETPEWVPARKDARLLSELVELWYR--- 70

Query: 84  WGSLAVNSRISFESYFDQIIRKSGDFDYRKITT---KHIRSGVESRKHTPSSAIQFLTSM 140
                +NS    +     +    G+    + T       R+   +   T ++  +    M
Sbjct: 71  LHGSGLNSGEDTKRRLLAMCEAMGNPRADRFTADMFAEYRAQRLAAGITANNMNREQAYM 130

Query: 141 RVLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF--E 197
           R +F    R +++   NP   +   K +   +   T   ++        G    +     
Sbjct: 131 RAVFNELKRLKQWKRANPLEDLRAFKIQENELTFLTLPQVRTLLDELPRGRNVHVTLVSM 190

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI 257
             L +G R  ++    +  ++N +      K+     V +     K L         F  
Sbjct: 191 VCLATGARWGEAEGLRISQVRNGVIQFVKTKSSKARAVPISKSLAKGLHA------HFRT 244

Query: 258 NNDKQKMNATQFSIWFKAKATKAGV----NKSAHGVRKFSATISADAGATAHELMATYGW 313
           + + +++  T     F+    +A +     +  H +R   A+     G     L    G 
Sbjct: 245 HGEGERIFGTA-WSAFREGLQRAKIVLPKGQLTHVLRHTFASHFMMNGGNILSLQRALGH 303

Query: 314 KTVDQAETYTK 324
            ++     Y  
Sbjct: 304 HSLTMTMRYAH 314


>gi|329726805|gb|EGG63265.1| site-specific recombinase, phage integrase family [Staphylococcus
           epidermidis VCU144]
          Length = 349

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/288 (14%), Positives = 98/288 (34%), Gaps = 31/288 (10%)

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITT---KHIRSGVE 124
            T  ++ + Y +++    L   ++    + ++  I  K G  +  KIT    +  R  + 
Sbjct: 58  RTFDYVFNHYLENS---DLRPKTKKRKRNEYNKHIKDKFGHINMNKITQNQCQEFRKYLM 114

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
               + ++A    +  +V+  +A +   + I+P +S++   R     +   +E+ ++   
Sbjct: 115 ETVPSTNTARTIWSGFKVVVNYAKKYFGLRIDPTISIKPIPRVKPRPKYMLREEFEERVK 174

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH---------------LQNNIFSIKTQKT 229
              E    R  F  + Y+GLR  ++                      + N     + +  
Sbjct: 175 DIKE-QDYRELFTLMFYTGLRVGEAMALVWTDFNKYKKEISISKTMDISNRTIYPRPKTD 233

Query: 230 GTIITVELP----DGFMKLLAMTPIGKETFFINNDK--QKMNATQFSIWFKAKATKAGVN 283
            +   V LP    +   +         + F   +      M    +    K    +A  N
Sbjct: 234 SSEDIVPLPKFINEMLTQRYQREKSANKYFDERSYFIFGGMAPKHYQHAQKKF-QQAFPN 292

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIR 330
            + H +R   A+  A+ G     L +      + +   TY+    + +
Sbjct: 293 YNIHTLRHSYASYLANNGVDIFVLQSLMRHAQITETMGTYSHLYTQKK 340


>gi|218559583|ref|YP_002392496.1| Integrase [Escherichia coli S88]
 gi|218366352|emb|CAR04103.1| Integrase [Escherichia coli S88]
          Length = 339

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 47/321 (14%), Positives = 91/321 (28%), Gaps = 45/321 (14%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87
            +G+R+R           A+ S       K+ ++     +   L  LI +      W SL
Sbjct: 20  RNGKRVR-KQFATKGEAIAFESFTMEEVNKKPWLGEKEDRRH-LSELIEQ------WYSL 71

Query: 88  AVNSRISFESY---FDQIIRKSGDFDYRKITTKHIRSGVESRKH--------------TP 130
              +    +        I    GD    ++T        E+R                 P
Sbjct: 72  YGQTLADPKRLIAKLRIICNGLGDPIASELTAGDFTKYREARLKGEVRNEDGTFMSPVKP 131

Query: 131 SSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            +      ++  +F    +   + A NP   +   K     +   T E++++     ++ 
Sbjct: 132 RTVNLEQRNLSSVFGTLKKLGHWSAPNPLAGLPTFKIAESELAFLTPEEIKRLLDACADS 191

Query: 190 --SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
             S   L  +  L +G R S++       +     +    K     TV +     + L  
Sbjct: 192 QSSSLLLIAKICLATGARWSEAENLQSHQVSKYRITYTKTKGKKNRTVPISKDLYEELPK 251

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV----NKSAHGVRKFSATISADAGAT 303
                      N  +          F+    +AG+     +  H +R   A+     G  
Sbjct: 252 -----------NRGKLFTP--CRKAFERAVKRAGLELPEGQCTHVLRHTFASHFMMNGGN 298

Query: 304 AHELMATYGWKTVDQAETYTK 324
              L    G   +     Y  
Sbjct: 299 ILVLRDILGHADIKMTMIYAH 319


>gi|211731867|gb|ACJ10162.1| integrase [Bacteriophage APSE-4]
          Length = 357

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 47/293 (16%), Positives = 101/293 (34%), Gaps = 34/293 (11%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE-----SRKHTPSSAIQFLTS 139
             L   +     S   ++  +     ++       R G+E     +++ + ++  + L  
Sbjct: 60  TRLKDITEAKIYSAISKMKNRQEQLRWKSRVNSAKRKGIEIPAYQAKEVSIATKAKHLAL 119

Query: 140 MRVLFKWA-VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEF 198
           ++ + + A    +++  +P   ++ P  + + IR    ++ ++  +   E    R   EF
Sbjct: 120 LKSMMRSAERDWKWIEKSPV--IKVPSAREKRIRWLEPDEAERLINECPEPL--RSTVEF 175

Query: 199 LLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254
            L +GLR S+        +           +  K+G  I V L D   + L       + 
Sbjct: 176 ALATGLRRSNIINLAWSQIDMQRKVAWIEPENSKSGKAIGVALNDTACRTLTRQLGNHQK 235

Query: 255 FFI-------------NNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADA 300
           +                N  +KM     + W +A   +AG+ N   H +R   A+    +
Sbjct: 236 WVFVHTMSAKRSDGSQTNSIRKMRVDSNTAW-RAALKRAGIENFRFHDLRHTWASWLIQS 294

Query: 301 GATAHELMATYGWKTVDQAETYTKGADR-----IRLGIKNSRRISSVVDSDDP 348
           G     L    GW++V+    Y   A        +       R +  + +  P
Sbjct: 295 GVPLSVLQEMGGWESVEMVRRYAHLASNHLTEHAKQIDGVFDRFNRKISNHVP 347


>gi|134045285|ref|YP_001096771.1| tyrosine recombinase XerC subunit [Methanococcus maripaludis C5]
 gi|132662910|gb|ABO34556.1| tyrosine recombinase XerC subunit [Methanococcus maripaludis C5]
          Length = 291

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 48/267 (17%), Positives = 97/267 (36%), Gaps = 20/267 (7%)

Query: 74  LISEYR--KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
           +I  Y   +S H    +  + I+  S     +R   +  + +I+ + +       + + +
Sbjct: 16  IIDNYMAFRSGH----SDKTVITNISGIRIFMRFHKNKTFDEISLEDVIEFYRKHESSEN 71

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLS-VERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           + IQ+L+ + + + W + + Y   NP    +   ++  +     TKE      S   E  
Sbjct: 72  TKIQYLSRLTLFYNWGISENYFLRNPVEKFLVTLRKSKKEREYLTKEQTNYLLSNVFEYE 131

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAMTP 249
             RL   F L++G+R S+     +  +  +  +I+   K      V + +     L +  
Sbjct: 132 Y-RLFLMFFLHTGVRNSEFRNLKIHDVDMDERTIRILGKGRKERYVFIDNELYSYLKIWL 190

Query: 250 IGKE-------TFFINNDKQKMNAT---QFSIWFKAK-ATKAGVNKSAHGVRKFSATISA 298
           I ++        FF+N     +  T    F+ +       K G   + H +R   AT   
Sbjct: 191 IQRDSKFPKSDHFFVNRLGNPIRLTHLVSFTDYLNEVSKNKIGFRITPHILRHTFATRCI 250

Query: 299 DAGATAHELMATYGWKTVDQAETYTKG 325
           D G     L    G + +     Y   
Sbjct: 251 DMGMDLKTLSLILGHEDIKTTSIYLHK 277


>gi|224024425|ref|ZP_03642791.1| hypothetical protein BACCOPRO_01149 [Bacteroides coprophilus DSM
           18228]
 gi|224017647|gb|EEF75659.1| hypothetical protein BACCOPRO_01149 [Bacteroides coprophilus DSM
           18228]
          Length = 412

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/268 (15%), Positives = 94/268 (35%), Gaps = 22/268 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGVESRKHTP----SSAI 134
                ++   FE+  +++           D    ++  + +R      K +     +SA+
Sbjct: 131 KEYTESTVTKFETSINRLREFIRFGYHKDDLFLNELDGQFVRDFEYWLKTSIGCQNNSAL 190

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQ 191
           + L +++ + + A+   ++  +P   +   K     +   ++E++ +            Q
Sbjct: 191 KHLKNLKKVIRIALANGWIEKDPFYGI-HFKMDEVNVEFLSQEELDRLMEKDFEIKRLEQ 249

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVELPDGFMKLLA 246
            R  F F  Y+GL  +D  +   +HL  +           QKT  +  + +     KL+ 
Sbjct: 250 VRDVFAFCCYTGLAFADVHQLSKEHLVRDNDGNLWIRKARQKTKQMCNIPVISPARKLID 309

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATI-SADAGAT 303
                 +    N     ++  + + + K  A   G+ K  + H  R  +AT+       +
Sbjct: 310 KYSHQPDCIAKNVLLPVLSNQKMNAYLKEIADICGIQKRLTTHVARHTAATVVFLANEVS 369

Query: 304 AHELMATYGWKTVDQAETYTKGADRIRL 331
              +    G   +   + Y K  D   L
Sbjct: 370 MENVAKILGHSNIRMTQHYAKVLDTSIL 397


>gi|290958002|ref|YP_003489184.1| integrase [Streptomyces scabiei 87.22]
 gi|260647528|emb|CBG70633.1| putative integrase [Streptomyces scabiei 87.22]
          Length = 405

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/358 (11%), Positives = 110/358 (30%), Gaps = 64/358 (17%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDF 109
           LT                +T+   +  + +      L  N+   + +     +    G  
Sbjct: 38  LTEKIAASNRGLPVATADSTVSAYLVYWLEGVAVHHLRENTHTRYAASIRLHLNPGLGAK 97

Query: 110 DYRKITTKHIRSGVE---------------------------SRKHTPSSAIQFLTSMRV 142
              ++TT+ +R+ ++                            ++ +P +       ++ 
Sbjct: 98  KLARLTTRDVRTFLDGLRTTCQCCAQGRDTDRRSCCAIGQCCEKRLSPLTVTYVHAVLKS 157

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202
             + AV ++ +  N   +++    +    +P T  + +Q     + G +    +E  L +
Sbjct: 158 ALEHAVHEDELPRNVARNIKTTAPRPRRFQPLTATEARQLLQ-AANGDRLHALYELALRT 216

Query: 203 GLRCSDSCRAGVQHLQNNI----------------FSIKTQKT-GTIITVELPDGFMKLL 245
           GLR  +      + +  +                  ++   KT  +   + LP   +  L
Sbjct: 217 GLRKGELLGLHWEDVDLDGGTATIHRSLQRTRSQGLTVLNTKTLASERRIALPTECLSSL 276

Query: 246 AMTP--------------IGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVR 290
            +                      F     + ++ T  +  F+     +G+     H +R
Sbjct: 277 KIHQEQQQEERQAAGTNWADNGLVFTTPKGKPLDPTNLTRRFRRLLHSSGLRTIRFHDLR 336

Query: 291 KFSATISADAGATAHELMATYGWKTVD-QAETYTKGADRIRLGIKNSRRISSVVDSDD 347
             +AT+  + G     +    G   +   A  Y     R+RL  +    ++ ++ + +
Sbjct: 337 HSTATLLLEQGIDLVVIKELLGHAHIGVTAGVYAHV--RLRLQRQAINTLNDLLGTGN 392


>gi|220920293|ref|YP_002495594.1| integrase family protein [Methylobacterium nodulans ORS 2060]
 gi|259710433|sp|B8I9N8|XERC_METNO RecName: Full=Tyrosine recombinase xerC
 gi|219944899|gb|ACL55291.1| integrase family protein [Methylobacterium nodulans ORS 2060]
          Length = 322

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 43/312 (13%), Positives = 93/312 (29%), Gaps = 37/312 (11%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF- 109
           +  +TP    + +P  +     WL     +       + N+  ++     Q +       
Sbjct: 1   MLQTTPPDLLLGAPDLREAAAAWLAVLKTE----RRFSENTVEAYGRDLRQFLAHLARSG 56

Query: 110 ------DYRKITTKHIRSGVESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
                     +  + +R+ + +R+    +  S ++ L ++R   +   R+ +  ++   +
Sbjct: 57  AAPDIPALVALKPRDLRAFMAARRAEGVSGRSLMRALAALRSFARHLDREGHGTVSALSA 116

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR---------LAFEFLLYSGLRCSDSCR 211
           V  PK +    RP          S      + R              L  +GLR  ++  
Sbjct: 117 VRSPKVERRLPRPLPVAAAVAMASPDIRAGEDRPDWVLARDAAVLALLYGAGLRIGEALG 176

Query: 212 AGVQH-----LQNNIFSIKTQKTG-----TIITVELPDGFMKLLAMTPIGKETFFINNDK 261
              +      +       K QKT        +   + D         P      F+    
Sbjct: 177 IRRKDAPVGDIDTLTILGKGQKTRMVPVIAPVQAAVADYLAVCPHPLPPDGP-LFVGQKG 235

Query: 262 QKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
             ++     +   +     G+    + H +R   AT           +    G  ++   
Sbjct: 236 GPLSPRIVQLAVASLRGALGLPDSATPHALRHSFATHLLARQGDLRAIQDLLGHASLATT 295

Query: 320 ETYTKGADRIRL 331
           + YTK  D  RL
Sbjct: 296 QVYTK-VDSARL 306


>gi|149916532|ref|ZP_01905048.1| Site-specific recombinase XerD-like protein [Roseobacter sp.
           AzwK-3b]
 gi|149809571|gb|EDM69428.1| Site-specific recombinase XerD-like protein [Roseobacter sp.
           AzwK-3b]
          Length = 316

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/245 (15%), Positives = 84/245 (34%), Gaps = 19/245 (7%)

Query: 101 QIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVA-IN 156
            +  + G +   ++T   +   V  +       S+  + +  M  +   A     V   N
Sbjct: 53  HVRAQLGHYHLDELTNPVLDVWVREQVVSGLQRSTINKHIYLMNRMLNLARHWCLVPAQN 112

Query: 157 PCLS-VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA--FEFLLYSGLRCSDSCRAG 213
           P    ++R        R  + +++Q+  +     S P L    + LL +G R  ++  A 
Sbjct: 113 PDQQPLKRLVVGDYKQRFLSADEIQRLIAACRRSSHPYLHHFVQILLLTGARKGEARTAL 172

Query: 214 VQHLQNN--IFSIKTQKTGTIITVELPDGFMKLLAM---------TPIGKETFFINNDKQ 262
            + +  +  I+++   K G    + L    +               P    +F   N + 
Sbjct: 173 WRDVDLDKRIWTVPRSKNGRSRRILLNTNAVDSFNAIRRTAERLQQPTLPTSFVFTNPRT 232

Query: 263 KMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
                 F   +     +A + +   H +R   A++  + G + +E+    G  +V   + 
Sbjct: 233 GRAYDSFYAAWYVARDQAKLEDVRIHDLRHTFASLLINKGVSLYEVQTLLGHSSVQMTQR 292

Query: 322 YTKGA 326
           Y   A
Sbjct: 293 YAHLA 297


>gi|298378096|ref|ZP_06988038.1| site-specific recombinase IntIA [Bacteroides sp. 3_1_19]
 gi|298265001|gb|EFI06672.1| site-specific recombinase IntIA [Bacteroides sp. 3_1_19]
          Length = 310

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 48/287 (16%), Positives = 100/287 (34%), Gaps = 36/287 (12%)

Query: 90  NSRISFESYFDQIIRKSGD--FDYRKITT---KHIRSGVESRKHTPSSAIQFLTSMRVLF 144
           +S  S++   +  IR SG     Y  I     +   + +  +    ++   ++  +R ++
Sbjct: 24  SSAKSYQDAMNSFIRYSGTDRIPYTYINKDTLRRYEAYLLEKGCMRNTVSTYIRRLRCIY 83

Query: 145 KWAVRQEYVAINPCL------SVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR---LA 195
             AV     A  P L       VE  ++K+         D+ +  +   +G + R   LA
Sbjct: 84  NKAVENGEAAFIPSLFKGVFTGVESQRKKS-----LPLGDLNRLMTVPVKGEKLRKTQLA 138

Query: 196 FEFLL-YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI---- 250
              +  Y G+   D       +++N I     QKTGT + +E+ D    +          
Sbjct: 139 LCLMFQYGGMSFVDFAHLNRGNIKNGILDYNRQKTGTSMRLEVLDTAEAMYKELAGERGG 198

Query: 251 GKETFFINNDKQK----------MNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISA 298
           G    F      K             ++F+   K     AG+  + +++ +R   A    
Sbjct: 199 GSGYLFPFLSGTKNGHEEYLEYTAALSRFNRNLKTLKEVAGIVSDVTSYTIRHSFAMSLK 258

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345
           +       +    G K++   + Y +     ++ + N     +V + 
Sbjct: 259 EQNVPIEMISELLGHKSIKTTQIYLRSFSLEKMTVVNKSCFENVYNY 305


>gi|320010246|gb|ADW05096.1| integrase family protein [Streptomyces flavogriseus ATCC 33331]
          Length = 382

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 58/320 (18%), Positives = 106/320 (33%), Gaps = 43/320 (13%)

Query: 58  REYINSPRKKPTTLKWL---ISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRK 113
           R+ I +P +     +WL   +  Y +S       +++   +E++    +I   G      
Sbjct: 60  RQGIPTPTRSAKLSEWLPYWLEHYVQS----RRKLSTLDKYEAHVRLYLIPMLGTKRLET 115

Query: 114 ITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
           ++   +R  +       T ++A +    +R     AVR+E +  N    VE P+ K   I
Sbjct: 116 LSVADVRRFIARVQAAQTAATAKEAHRVLRTALTAAVREELITRNVASLVEPPRVKQREI 175

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQ-- 227
            PW+ ++   F    +       AF   +  GLR  +        +   N +  ++ Q  
Sbjct: 176 SPWSLKETLSFLE-AARRDPLYAAFMLAICMGLRRGELVGLRWTDVDLDNRVLHVRHQTQ 234

Query: 228 -----------KTGTIITVELPDGFMKLLA--------------MTPIGKETFFINNDKQ 262
                      K+     V +P   +  L               +T       F   + +
Sbjct: 235 RRRGTLYDDDPKSRRRRVVPMPALCVAPLRWHRLKQRETFADTGVTWSESGYIFATRNGR 294

Query: 263 KMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-E 320
            +        F   A  AG+     H  R   AT+   AG     +M   G   +    +
Sbjct: 295 PVEPRNVYRSFTRVAAGAGLRVVRLHDARHGCATLLTAAGVAPRVIMEILGHSQISITMD 354

Query: 321 TYTKGA-DRIRLGIKNSRRI 339
            YT    D  R  I +  R+
Sbjct: 355 VYTHVVHDTQREAISHMDRL 374


>gi|239981603|ref|ZP_04704127.1| integrase [Streptomyces albus J1074]
          Length = 382

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 52/296 (17%), Positives = 95/296 (32%), Gaps = 35/296 (11%)

Query: 85  GSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMR 141
               +++   +E++    ++   G      +    +R  +    ++ T ++A +    +R
Sbjct: 87  PRRKLSTYDKYEAHARLYLVPLLGAKRLESLGVADVRRFIVRLEKETTAATAKESHRVLR 146

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201
                A R+E +  N    VE P+     ++PWT ++   F +  S       AF   + 
Sbjct: 147 SALSSACREELITRNVAKLVEPPRTVNRELKPWTLDETLDFLA-ASRKDPLYAAFVLAIA 205

Query: 202 SGLRCSDSCRAGVQ--HLQNNIFSIKTQ-------------KTGTIITVELPD------- 239
            GLR  +          L N +  ++ Q             K+     V LP        
Sbjct: 206 MGLRRGEIIGLRWSDLDLDNRVLYVRQQTQRRRGVLYDDDPKSRRRRAVPLPALCIAPLR 265

Query: 240 --GFMKLLAMTPIG----KETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKF 292
                +  A    G        F     +++        F   A  AG+     H  R  
Sbjct: 266 WHRMRQAAARVKAGEWQESGYVFTTRTGRQVEPRNVYRSFTRVAESAGLRVIRLHDARHG 325

Query: 293 SATISADAGATAHELMATYGWKTVDQA-ETYTKGA-DRIRLGIKNSRRISSVVDSD 346
           +AT+   AG     +M   G   +    + YT    D  R  I +  R+     S 
Sbjct: 326 TATLLTAAGVAPRVVMEILGHSQISITMDVYTHVVQDTQREAISHMDRLLKRRPSR 381


>gi|9628601|ref|NP_043466.1| integrase [Haemophilus phage HP1]
 gi|138561|sp|P21442|VINT_BPHP1 RecName: Full=Integrase
 gi|459175|gb|AAB09182.1| integrase [Haemophilus phage HP1]
          Length = 337

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/261 (14%), Positives = 74/261 (28%), Gaps = 26/261 (9%)

Query: 83  HWGSLAVNSR---ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--------KHTP- 130
            W  L   +     +  +    +    GD    +   K      + R        K+ P 
Sbjct: 68  EWFDLHGKTLSDGKARLAKLKNLCSNLGDPPANEFNAKIFADYRKRRLDGEFSVNKNNPP 127

Query: 131 --SSAIQFLTSMRVLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
             ++  +    +R +F      +++   NP   V   K +   +    + D+ +  +   
Sbjct: 128 KEATVNREHAYLRAVFNELKSLRKWTTENPLDGVRLFKERETELAFLYERDIYRLLAECD 187

Query: 188 EGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
               P   L     L +G R S++       +     +    K+    TV +      +L
Sbjct: 188 NSRNPDLGLIVRICLATGARWSEAETLTQSQVMPYKITFTNTKSKKNRTVPISKELFDML 247

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAH 305
              P  +   F +          F         +    +  H +R   A+     G    
Sbjct: 248 ---PKKRGRLFNDAY------ESFENAVLRAEIELPKGQLTHVLRHTFASHFMMNGGNIL 298

Query: 306 ELMATYGWKTVDQAETYTKGA 326
            L    G  T++    Y   A
Sbjct: 299 VLKEILGHSTIEMTMRYAHFA 319


>gi|148243976|ref|YP_001220215.1| phage integrase family protein [Acidiphilium cryptum JF-5]
 gi|146400539|gb|ABQ29073.1| phage integrase family protein [Acidiphilium cryptum JF-5]
          Length = 302

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/283 (14%), Positives = 92/283 (32%), Gaps = 25/283 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSG---DFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMR 141
              +  +  ++     +     G   D    +   +      ++   TP+     ++++R
Sbjct: 24  RRFSRETHRNYLRDVGRFATFLGRSPDTATAEDLRRFQIEQRDAGVPTPTM-NSIVSALR 82

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201
             F   + +     +    + R           +++++ +  +  +       A      
Sbjct: 83  FFFTQTIDR----PDLARKLIRTPHPRNLPVVLSRDEVARLLNATTCLKHQ-AALSVAYG 137

Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKTQ--KTGTIITVELPDGFMKLLAMT-PIGKETFFIN 258
           +G+R ++     V  + +    I+ +  K G      LP   + LL     IG +   ++
Sbjct: 138 AGMRVAEVAALKVSDIDSERMLIRVERGKGGRYRNAILPADLLILLREWWKIGHQQGVMH 197

Query: 259 NDK---------QKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHEL 307
                       + ++  Q        A  A + K    H +R   AT   + G     +
Sbjct: 198 AQGWLFPGQQVTKPISTRQLHRVVVEAARAAEITKRVGPHTLRHSFATHLLEDGVDIRVI 257

Query: 308 MATYGWKTVDQAETYTKGADR-IRLGIKNSRRISSV-VDSDDP 348
            A  G   ++    YTK A R +R  I    R+  V  D + P
Sbjct: 258 QALLGHSHLNTTALYTKVATRTVRAVISPLDRLGIVTADQERP 300


>gi|58696879|ref|ZP_00372392.1| tyrosine recombinase XerD [Wolbachia endosymbiont of Drosophila
           simulans]
 gi|225630697|ref|YP_002727488.1| site-specific recombinase, phage integrase family [Wolbachia sp.
           wRi]
 gi|58536905|gb|EAL60089.1| tyrosine recombinase XerD [Wolbachia endosymbiont of Drosophila
           simulans]
 gi|225592678|gb|ACN95697.1| site-specific recombinase, phage integrase family [Wolbachia sp.
           wRi]
          Length = 328

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 47/309 (15%), Positives = 106/309 (34%), Gaps = 47/309 (15%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYF---DQIIRKSGDFDY---RKITTKHIRSGVE 124
           + + I     S  +   A N+  S+ S     ++ + +SG       +     +++S   
Sbjct: 15  ITYYIDA-LASERFA--AQNTLESYRSDLHQFEEFLLESGTTLVGVNKTNIKDYVKSLCT 71

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC----LSVERPKRKTEGIRPWTKEDM- 179
            +K+  SS  + +++M+  +K       +  NP       ++ PK      +  + E++ 
Sbjct: 72  QKKYKSSSISRKISAMKNFYKCLFNDGIIDFNPAPANDAELKNPKVSRPLPKYLSVEEIF 131

Query: 180 ---QQFKSFWSEGSQP----RLA--FEFLLYSGLRCSDSCRAGVQHL-------QNNIFS 223
                 +   SE ++     RL    + L  SG+R S+     +  +           + 
Sbjct: 132 LLMDTVRKSASESNKEISSKRLCAILDILYSSGMRVSELISMKLCEVSHLINSNNKECYI 191

Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFIN-----------NDKQKMNATQFSIW 272
           I   K+G    +   +  ++ L      ++                   + +   +    
Sbjct: 192 IIKGKSGRERQILFNEQALQSLRNYLSVRDNLISKEKESDWLFPGDKPNKPITRQRVGQL 251

Query: 273 FKAKATKAGVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            K  A K  +++   S H +R   AT   ++GA    +    G   +   + YT  A+  
Sbjct: 252 MKELARKCNIDENKISPHVIRHSFATHLLNSGANIVLIQKVLGHTNLSTTQIYTHIANEK 311

Query: 330 ---RLGIKN 335
              +L   +
Sbjct: 312 LKDKLADSH 320


>gi|211906275|gb|ACJ11655.1| putative phage-associated helicase [Candidatus Hamiltonella
           defensa]
          Length = 357

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/242 (17%), Positives = 85/242 (35%), Gaps = 29/242 (11%)

Query: 131 SSAIQFLTSMRVLFKWA-VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
           ++  + L  ++ + + A    +++  +P   ++ P  + + IR    ++ ++  +   E 
Sbjct: 111 ATKAKHLALLKSMMRSAERDWKWIEKSPV--IKVPSAREKRIRWLEPDEAERLINECPEP 168

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGFMKLL 245
              R   EF L +GLR S+        +           +  K+G  I V L D    +L
Sbjct: 169 L--RSTVEFALATGLRRSNIINLAWSQIDMQRKVAWIEPENSKSGKAIGVALNDTACCIL 226

Query: 246 AMTPIGKETFFI-------------NNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRK 291
                  + +                N  +KM     + W +A   +AG+ N   H +R 
Sbjct: 227 TRQLGNHQKWVFVHTMSAKRSDGSQTNSIRKMRVDSNTAW-RAALKRAGIENFRFHDLRH 285

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADR-----IRLGIKNSRRISSVVDSD 346
             A+    +G     L    GW++V+    Y   A        +       R +  + + 
Sbjct: 286 TWASWLIQSGVPLSVLQEMGGWESVEMVRRYAHLASNHLTEHAKQIDGVFDRFNRKISNH 345

Query: 347 DP 348
            P
Sbjct: 346 VP 347


>gi|145223514|ref|YP_001134192.1| phage integrase family protein [Mycobacterium gilvum PYR-GCK]
 gi|145216000|gb|ABP45404.1| phage integrase family protein [Mycobacterium gilvum PYR-GCK]
          Length = 391

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 49/333 (14%), Positives = 105/333 (31%), Gaps = 35/333 (10%)

Query: 11  VTKERTRHG-KIIYYF---RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
           V   R   G + +  +   R     +     P    ++    +A+   +       +PR 
Sbjct: 28  VPSARDGKGLRWLARYVDERGREHSKSFARKPDAQQWLDGQTAAVVTGS-----HVAPRT 82

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
              T++     +     +     ++     ++   I+ + GD     +    +++ V   
Sbjct: 83  AQMTVEQWCDTWI--GGYAVNRESTVRQARTHIKHIVAEFGDQPLSALRPSQVKAWVAGL 140

Query: 127 KHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
           K     PS      + +  +   AV    +A NPC     P   T+     T E +    
Sbjct: 141 KKADVAPSYVYALHSRLSQICGDAVHDGVLARNPCSRRTAPPMGTQKPYVATTEQVWAL- 199

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ------KT-GTIIT 234
              +     R+A     + GLR ++     V  +     +     Q      KT G+   
Sbjct: 200 -HDAMPDHLRVAVLLGAFVGLRVAEVAALRVSDVDFIRGVVHPVQQWPDKPLKTDGSAQP 258

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG---VNK-----SA 286
           V +P+    LL+ +     +  +      +       W   +  +A    ++      S 
Sbjct: 259 VPIPNDLALLLSASVKRYPSPMMVTRG--VAGETAPPWVIEREVRAARSSIDGLPEEFSF 316

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQA 319
           H +R + A++   +GA    + A     +    
Sbjct: 317 HDLRHYLASLLIASGADIKTVQARMRHGSARTT 349


>gi|302388220|ref|YP_003824042.1| integrase family protein [Clostridium saccharolyticum WM1]
 gi|302198848|gb|ADL06419.1| integrase family protein [Clostridium saccharolyticum WM1]
          Length = 368

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 52/356 (14%), Positives = 117/356 (32%), Gaps = 55/356 (15%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEY 78
           GK  Y++ +         Y      +  Y         KR               L   +
Sbjct: 25  GKYRYFYART--------YKGVKEKMKNYKETRESGKEKRYGGAKDVCS------LFESW 70

Query: 79  RKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFL 137
            + A    +  ++  S+    D  +I        +K+T + +   V++ +  P  A    
Sbjct: 71  LEDAS-LRVKPSTYESYYRCMDKYVIPFFKQDKSQKLTEESVLCFVKAMREQPGLADSSR 129

Query: 138 TSMRVLFKWAVRQEYVAINP-----CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
                +FK A++ E +   P        V+ PK   + +  ++ ++ Q+     +  S+ 
Sbjct: 130 KKNLTIFKIALK-EILKGTPEGFSIIEQVKIPKPDDKEVMVFSLKE-QRLIEQTALHSKD 187

Query: 193 RLA--FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT--------------------- 229
           + A       Y+G+R  + C      +     ++   +T                     
Sbjct: 188 KRAAGIILCFYTGIRLGELCSLKWGDIDMEAGTLSIGRTVSRIKDFEEGKSKTALLVGAP 247

Query: 230 ---GTIITVELPDGFMKLLA---MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV- 282
               ++  + LP+  +KL      +    + +  +     ++   F   +K    +A V 
Sbjct: 248 KSRKSLRKIPLPEFLLKLFKECGFSHANPDHYIFSQGDSPIDPRCFQKLYKKLLKEAHVQ 307

Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGA-DRIRLGIKNS 336
           ++  H +R   AT + + G     +    G  +V      Y+    ++ +L +KN 
Sbjct: 308 DRKFHAIRHTFATRALEMGVDVKTISELLGHSSVSITLNVYSHSLMEQKKLPLKNL 363


>gi|33594905|ref|NP_882548.1| site-specific tyrosine recombinase XerC [Bordetella parapertussis
           12822]
 gi|33564981|emb|CAE39928.1| putative integrase/recombinase [Bordetella parapertussis]
          Length = 326

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 37/242 (15%), Positives = 73/242 (30%), Gaps = 34/242 (14%)

Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
           +H  + + ++   P S  + L + R  ++W      +  NP   V  PK      +  + 
Sbjct: 62  RHFVARLHAQGLGPRSLARALAAWRGFYQWWAPAAGLPGNPATGVRAPKAPRGLPKALSV 121

Query: 177 EDMQQFKSFW-------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL------------ 217
           E  Q                 +    FE L  SGLR ++     +++             
Sbjct: 122 EQTQVLLDHAPARLATEPAALRDHAMFELLYSSGLRLAELVSLDLRYERTPEYESRSWLN 181

Query: 218 QNNIFSIKTQKTGTIITVEL----PDGFMKLLAMTP---------IGKETFFINNDKQKM 264
           +++   I   K G   +V +         K L   P               F+    +++
Sbjct: 182 RDDAEVIVVGKGGKRRSVPVGQSALAALDKWLQARPQLAAAGAGAQDAAALFVGTRGRRI 241

Query: 265 NATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
                 +     A  AG+      H +R   A+    +      +    G   +   + Y
Sbjct: 242 APRVVQLQLARLAQAAGLPAHVHPHVLRHNFASHVLQSAQDLRAVQEMLGHANISTTQVY 301

Query: 323 TK 324
           T+
Sbjct: 302 TR 303


>gi|170769173|ref|ZP_02903626.1| site-specific recombinase, phage integrase family [Escherichia
           albertii TW07627]
 gi|191167584|ref|ZP_03029395.1| site-specific recombinase, phage integrase family [Escherichia coli
           B7A]
 gi|300926544|ref|ZP_07142332.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 182-1]
 gi|170121825|gb|EDS90756.1| site-specific recombinase, phage integrase family [Escherichia
           albertii TW07627]
 gi|190902345|gb|EDV62083.1| site-specific recombinase, phage integrase family [Escherichia coli
           B7A]
 gi|294492327|gb|ADE91083.1| site-specific recombinase, phage integrase family [Escherichia coli
           IHE3034]
 gi|300417435|gb|EFK00746.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 182-1]
 gi|315296162|gb|EFU55470.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 16-3]
 gi|324116116|gb|EGC10040.1| phage integrase [Escherichia coli E1167]
          Length = 331

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 51/305 (16%), Positives = 93/305 (30%), Gaps = 22/305 (7%)

Query: 29  HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLA 88
            G+RIR           A+   +  +   +E++  P     TL  L+  +     +   +
Sbjct: 21  DGKRIR-RKFKTKGEAQAFERHVLVNYHNKEWLEKP-ADRRTLTELLGRWW---IYHGKS 75

Query: 89  VNSRISFESYFDQIIRKSGDF------DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRV 142
                        II K  +          K T    R  + +    P+S  + L  M  
Sbjct: 76  HERGDIERGRLTTIIAKFAEMGVSRADQLTKKTITDYRVVMMNDGLKPASVNRHLAIMSG 135

Query: 143 LFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201
           +F   +    Y + NP   V+R +     +   + E++ +  S          A    L 
Sbjct: 136 MFTKLIDAGEYHSHNPFREVKRLREAVTEMAFLSSEEITRLLSMLD--GDELNATLVCLS 193

Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK 261
           +G R S+      +H+ N + +    K G   T+ +      L+            N   
Sbjct: 194 TGGRWSEVSNLKAEHIINQMVTFMKTKNGKRRTIPVS---QDLIKRIKTKNSGRLFNA-- 248

Query: 262 QKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
              +  +     +         ++ H +R   AT     G     L    G   + Q  T
Sbjct: 249 ---SYYKVRNALREVKPDLPDGQAVHVLRHTFATHFIMNGGNIITLQRILGHSNIQQTMT 305

Query: 322 YTKGA 326
           Y   A
Sbjct: 306 YAHFA 310


>gi|311110801|ref|ZP_07712198.1| integrase/recombinase, phage integrase family [Lactobacillus
           gasseri MV-22]
 gi|311065955|gb|EFQ46295.1| integrase/recombinase, phage integrase family [Lactobacillus
           gasseri MV-22]
          Length = 295

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 40/274 (14%), Positives = 99/274 (36%), Gaps = 14/274 (5%)

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121
             PRK+  + K  ++++ ++      +  +   ++   +Q++ K      R+ITT+ +R 
Sbjct: 8   REPRKRKISNKEYLAKFLEAKKMEGCSDRTIKYYKVTVEQLLAKV-IRPIRRITTEEMRE 66

Query: 122 GVESRKH----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
            +   +       ++      ++   F W   ++Y+  +P   + + + +       T E
Sbjct: 67  YLVEYQKINNCGKTTIDNIRRNISSFFSWLEEEDYILKSPMRRIHKIRAEKLVKNVITDE 126

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVE 236
           D+++ +   S   +     + L  +G+R  +  R     +  +    +   K      V 
Sbjct: 127 DIEKLRDGCSC-LRDVAMIDLLYSTGIRVGELVRLNRNDINFSERECVVFGKGDKERRVY 185

Query: 237 LPDG----FMKLLAMTPIGKETFFINNDKQ--KMNATQFSIWFKAKATKAGVNK-SAHGV 289
                    +  L          F++ DK   ++  +   I  +    K  +++   H  
Sbjct: 186 FDAKSKVHLINYLRSREDDNPALFVSLDKPNDRLKISGVEIRLRQLGRKLHLDRIHPHKF 245

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           R+  AT + D G    ++    G   +D    Y 
Sbjct: 246 RRSMATRAIDKGMPIEQVQKILGHSQIDTTMQYA 279


>gi|302346798|ref|YP_003815096.1| site-specific recombinase, phage integrase family [Prevotella
           melaninogenica ATCC 25845]
 gi|302150347|gb|ADK96608.1| site-specific recombinase, phage integrase family [Prevotella
           melaninogenica ATCC 25845]
          Length = 421

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 39/233 (16%), Positives = 85/233 (36%), Gaps = 17/233 (7%)

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
            +    +  S+    L  +  + + A ++ Y+  +P   ++  +  T      T +D+ +
Sbjct: 172 MLSDLGNKESTVSNRLRHLHQVIRKAQQERYIREDPFELID-IETPTYERNALTSDDLHK 230

Query: 182 FKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHL---QNNI--FSIKTQKTGTII 233
             S+    S     RL F    ++GL  SD  +  +  +    +     S+   KT    
Sbjct: 231 LLSYRPHRSVDNHCRLIFLLGCFTGLAFSDLKKLRMDDVYTLDDGRRYISLCRTKTQNRS 290

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN----KSAHGV 289
            V L     ++L +   G++   +   ++    + F+   +    KAG+      ++H  
Sbjct: 291 IVPLLPIAEEILTIVSDGQKEGLL--FREFPTNSHFNRKIRDIIIKAGLPSHTEATSHTA 348

Query: 290 RKFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
           R   AT    + G     +    G + +   E Y K   + ++  +    I S
Sbjct: 349 RHTFATTICLENGLPIETVSKMLGHRFISTTELYAK-VSKSKIAREMQPLIGS 400


>gi|220927371|ref|YP_002502673.1| integrase family protein [Methylobacterium nodulans ORS 2060]
 gi|219951978|gb|ACL62370.1| integrase family protein [Methylobacterium nodulans ORS 2060]
          Length = 425

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 54/348 (15%), Positives = 102/348 (29%), Gaps = 50/348 (14%)

Query: 26  RKGHGRRIRLPYPHESTFIPA--------YMSALTGSTPKREYINSPRKKPT-TLKWLIS 76
           R   G+R+++          A          +        R    +P  +PT T+   + 
Sbjct: 54  RLPDGKRVQVRLGRADDVAQADGSTVLTHEQAKEATRAWVRSLQAAPDAQPTLTVADALE 113

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS----- 131
            Y ++     +      +       I+ K G      +T   +R   ++  H P      
Sbjct: 114 RYLEARTAEGMKAVY-DARSRARTHILPKLGATRVSDLTLDKLRRWRDAMVHAPKRVRTG 172

Query: 132 ------------------------SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167
                                   +A + LT ++    WA + +    +    + +P R 
Sbjct: 173 KLAKQVNTRPVDLSDPEALRRRRDTANRTLTLLKAALNWAYQHQLADNDRAWRLLKPFRD 232

Query: 168 TEGIRP--WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFS 223
           T   R       + Q+  +      +  +A   +  +G R  +  R  V+     N    
Sbjct: 233 TGSARVRFLDAAEQQRLLNTCDGALRDLVATALM--TGARFGELSRLMVRDFDRANGTVF 290

Query: 224 IKTQKTGTIITVELPD---GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280
           I+  K G    V L        + L+     K    I  + +      +   FK    +A
Sbjct: 291 IERSKNGRARHVPLTPGGVALFERLSAGRAPKALLLIRENGEGWGPATYQRSFKTALDRA 350

Query: 281 GVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGA 326
            +   + H +R   A+     GA    +    G      AE  Y   A
Sbjct: 351 KLESITLHELRHSYASAMVRNGAPLIVVAEALGHSGTRMAEKHYAHLA 398


>gi|159897208|ref|YP_001543455.1| integrase family protein [Herpetosiphon aurantiacus ATCC 23779]
 gi|159890247|gb|ABX03327.1| integrase family protein [Herpetosiphon aurantiacus ATCC 23779]
          Length = 287

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 39/289 (13%), Positives = 97/289 (33%), Gaps = 19/289 (6%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG---VESRK 127
           +   I EY  +      +  +  ++     +      +   + +T   +R+    +  + 
Sbjct: 2   ITQWIEEYLSAKIAERRSPATITTYRIRLGRFGTWVLEQPNQVLTRALLRAYSAYLAQQN 61

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            + +S   +L    VL +W   + Y+       ++ P+        +T + +++      
Sbjct: 62  ISITSHYSYLNDALVLVRWLAEEGYIQPVKTDKLK-PRLPKRLPAHYTMDQIKRLLLVAE 120

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP----DGFMK 243
              + +     LL +G+R S+  +       +   ++   K      + +     +    
Sbjct: 121 L--REKAMLCVLLDTGVRVSELIQLRRTSFDSEGCAMILGKGSKDRYIWISSVTQEVLRT 178

Query: 244 LLAMTPIGKETFFINNDKQK-MNATQFSIWFKAKATKAGVNKS----AHGVRKFSATISA 298
            +A         F+++ +QK +  +     F   A+ A +        H  R   A    
Sbjct: 179 YIASRTDTNPALFVSHRQQKTLTISGVHQSFDRVASDAEIRNDVRRLIHSFRATFARELI 238

Query: 299 DAGATAHELMATYGWKTVDQAETY----TKGADRIRLGIKNSRRISSVV 343
             G  A  L    G +T+  +  Y    +  A + R G+    ++ S +
Sbjct: 239 KKGLDAESLRVLMGHETIQMSLHYAQLSSHEATQNRQGVNLLEKVESCL 287


>gi|99080617|ref|YP_612771.1| phage integrase [Ruegeria sp. TM1040]
 gi|99036897|gb|ABF63509.1| phage integrase [Ruegeria sp. TM1040]
          Length = 334

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 59/327 (18%), Positives = 103/327 (31%), Gaps = 34/327 (10%)

Query: 15  RTRHGKIIYYFRKGHGRRI----RLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
           R R G  +Y+   G  RR     R     E   I  Y                 R+   T
Sbjct: 8   RFRGGFCVYWHEGGKRRRYSLKARTREEAEPEAIDVYRRETLDQ----------RRGRDT 57

Query: 71  LKWLISEYRKSAHWGSLAVN-SRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--- 126
           +  +   YR+      L    +  +       ++   G +   +ITT   R  V +R   
Sbjct: 58  VADIWEAYRQ-----DLGEKPTAKTMGYTGKAVLAHFGAYRPDQITTSLCRKYVTNRTAE 112

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             +  +    L  +R   ++AV++  +   P   +ERP + T   R   KE++       
Sbjct: 113 GKSQGTIHTELGHLRSAMRFAVKERIIDKAPS--IERPAKPTPKERYLEKEEIAALIDAA 170

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKT--QKT-GTIITVELPDGF 241
           S      LA   L  +  R           +     I +++    KT      V +  G 
Sbjct: 171 SAP-HIALAIHLLFATAGRIGAVLDLTWDRVDFQRGIINLRLDDSKTRKGRAIVPMNSGI 229

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADA 300
              L        + ++               F+A   +A ++  + H +R  SA      
Sbjct: 230 RAALQTAHDAALSDYVVEYAGGKVKN-IRKGFEAACRRAELDGVTLHTIRHSSAVAMVSN 288

Query: 301 GATAHELMATYGWKTVDQA-ETYTKGA 326
           G    ++    G   V    +TY + A
Sbjct: 289 GVPLEKVAQYLGHSNVAITYQTYARFA 315


>gi|238855032|ref|ZP_04645361.1| integrase [Lactobacillus jensenii 269-3]
 gi|282934072|ref|ZP_06339352.1| phage integrase [Lactobacillus jensenii 208-1]
 gi|238832403|gb|EEQ24711.1| integrase [Lactobacillus jensenii 269-3]
 gi|281301874|gb|EFA94138.1| phage integrase [Lactobacillus jensenii 208-1]
          Length = 367

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 53/369 (14%), Positives = 123/369 (33%), Gaps = 33/369 (8%)

Query: 7   LPPFVTKERTRHGKIIYYF---RKGHGRRIRLPYP-HESTFIPAYMSALTGST--PKREY 60
           +P FV  E     +  +Y        G+++R     + + F     +A+  S    +R  
Sbjct: 1   MPQFVKNENGWSYRSTWYITEIDPDTGKKVRKRKSKYVTGFATKRQAAIAASEFETRRNT 60

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
             +  + P    +   +Y +      +   + I++ +   +I     +   + IT    +
Sbjct: 61  GENILENPALFDYA-EDYIELNVKNRVRPATLIAYRNSIKRIEDNFPNIPLKSITRSMFQ 119

Query: 121 SGVE--SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP--WTK 176
           + +   S K++ S+  Q       + K A+    +  +    V+ P++  +  +    + 
Sbjct: 120 AFLNQISIKYSKSTVNQTAVVFSQIMKLALADGIIVRDVTSFVQIPEKAQDKRKIDYLSL 179

Query: 177 EDMQQFKSFWSEG---SQPRLAFEF-LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
            D++            S+    F    + +G R S+        L      I  Q+    
Sbjct: 180 SDVKALVQHIKSNLSTSKVGPYFILTAIQTGARLSEIAALTWNDLTPTSIKITKQRNRDG 239

Query: 233 I-----------TVELPDGFMKLLAMTPI-GKETFFINNDKQKMNATQFSIWFKAKATKA 280
           +           TV +      +L    +  K+  F   +    + +  +   +    + 
Sbjct: 240 VVSKPKTESSVRTVSITKELYNILQDLKVNKKDLIFEQPNGIVPDPSSLNFTLRRLLKEC 299

Query: 281 GVNKS---AHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADRIRLGIKNS 336
           G+ +     H +R     +  +A      +    G K V    E Y    D  +   +  
Sbjct: 300 GIKRHGFHFHSLRHTHVALLLNADVDILTISQRLGHKNVSTTTEVYAYLLDEKKKSEE-- 357

Query: 337 RRISSVVDS 345
           R+I SV+++
Sbjct: 358 RKIKSVLET 366


>gi|301309060|ref|ZP_07215005.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           20_3]
 gi|300833086|gb|EFK63711.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           20_3]
          Length = 310

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 48/287 (16%), Positives = 101/287 (35%), Gaps = 36/287 (12%)

Query: 90  NSRISFESYFDQIIRKSGD--FDYRKITT---KHIRSGVESRKHTPSSAIQFLTSMRVLF 144
           +S  S++   +  IR SG     Y  I     +   + +  +    ++   ++  +R ++
Sbjct: 24  SSAKSYQDAMNSFIRYSGTDRIPYTYINKDTLRRYEAYLLEKGCMRNTVSTYIRRLRCIY 83

Query: 145 KWAVRQEYVAINPCL------SVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR---LA 195
             AV     A  P L       VE  ++K+         D+ +  +   +G + R   LA
Sbjct: 84  NKAVENGEAAFIPSLFKGVFTGVESQRKKS-----LPLGDLNRLMTVPVKGEKLRKTQLA 138

Query: 196 FEFLL-YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD----GFMKLLAMTPI 250
              +  Y G+   D       +++N I     QKTGT + +E+ D     + +L      
Sbjct: 139 LCLMFQYGGMSFVDFAHLNRGNIKNGILDYNRQKTGTSMRLEVLDTAEAMYKELAGERAG 198

Query: 251 GKETFFINNDKQK----------MNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISA 298
                F      K             ++F+   K     AG+  + +++ +R   A    
Sbjct: 199 SSGYLFPFLSGTKNGHEEYLEYNAALSRFNRNLKTLKEVAGITSDVTSYTIRHSFAMALK 258

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345
           +       +    G K++   + Y +     ++ + N     +V + 
Sbjct: 259 EQNVPIEMISELLGHKSIKTTQIYLRSFSLEKMTVVNKSCFENVYNY 305


>gi|238790994|ref|ZP_04634726.1| Phage integrase [Yersinia frederiksenii ATCC 33641]
 gi|238720912|gb|EEQ12620.1| Phage integrase [Yersinia frederiksenii ATCC 33641]
          Length = 275

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 68/199 (34%), Gaps = 10/199 (5%)

Query: 50  ALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF 109
           AL           + + +  T++  +  Y +      LA N+          I ++ GD 
Sbjct: 65  ALLERLQAPAPTPAAKAEVNTVESWLKRYSELLKRRELAENTMKMRVLQIGYINQEFGDK 124

Query: 110 DYRKITTKHIRSGVESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167
               ITTKHI   + +       S A+   + +  +F+ A+    ++ NP  +   P  K
Sbjct: 125 PIEAITTKHIADFINAYVDEGKSSMAVNLRSVLSDMFREAIADGLISSNPVEATRTPSPK 184

Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQP----RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223
            +  R     D   F+       Q      L+    L +G R  D  +     + +    
Sbjct: 185 VKRERL----DYDAFRKIQVAALQQPKWVSLSMALALMTGQRRDDIRQLKRGDVHDGKLW 240

Query: 224 IKTQKTGTIITVELPDGFM 242
           +   KTG  I + L     
Sbjct: 241 VIQGKTGNQIAISLSLRLE 259


>gi|17233219|ref|NP_490309.1| integrase/recombinase [Nostoc sp. PCC 7120]
 gi|17135741|dbj|BAB78287.1| integrase/recombinase [Nostoc sp. PCC 7120]
          Length = 319

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 44/281 (15%), Positives = 97/281 (34%), Gaps = 31/281 (11%)

Query: 85  GSLAVNSRISFESYFDQIIR-------KSGDFDYRKITTKHIRSGVESR--KHTPSSAIQ 135
            SL+  SR + E   + I R        +   D+ K+  +H  +       +++P++  +
Sbjct: 29  SSLSPTSRRTMEKALNVIARLLTSNQCDAMSLDWSKLRYQHTAAIRAIFIEQYSPATTNR 88

Query: 136 FLTSMRVLFKWAVRQEYVAINP---CLSVERPKRKTEGI-RPWTKEDMQQFKSFWS---- 187
            L +MR + K ++R  +++       + ++  +  +    R    E++            
Sbjct: 89  MLCAMRRVLKESLRLGFMSAQDYQYAIDLKSVRGDSGLPGRLIKPEEITSLLRNCLQDNV 148

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKLL 245
            G +       L   GLR S++    +     ++N+ +++  K G    V LP G + +L
Sbjct: 149 IGIRDAALIGILSSCGLRRSEAVALEMNDFNREDNLLTVRQGKGGKSRRVYLPPGVVGIL 208

Query: 246 A-----MTPIGKETFFINNDK-----QKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSA 294
                                     Q +         + +A   G+   S H  R+   
Sbjct: 209 NDWLKIRGKSSGALICPVKRGGHIHIQHLTDQAVMAICQKRADSTGIKPFSPHDFRRTFV 268

Query: 295 TISADAGATAHELMATYGWKTVDQAETY-TKGADRIRLGIK 334
           T   ++G     +    G   +   + Y  +G    R  ++
Sbjct: 269 TRLLESGIDVLTVSQLAGHVNLATTQKYDLRGEAAKRKAVE 309


>gi|69244690|ref|ZP_00602954.1| Phage integrase:Phage integrase, N-terminal SAM-like [Enterococcus
           faecium DO]
 gi|257879459|ref|ZP_05659112.1| phage integrase [Enterococcus faecium 1,230,933]
 gi|257881742|ref|ZP_05661395.1| phage integrase [Enterococcus faecium 1,231,502]
 gi|257890218|ref|ZP_05669871.1| phage integrase [Enterococcus faecium 1,231,410]
 gi|260558834|ref|ZP_05831023.1| phage integrase [Enterococcus faecium C68]
 gi|293560447|ref|ZP_06676939.1| integrase [Enterococcus faecium E1162]
 gi|294621631|ref|ZP_06700796.1| integrase [Enterococcus faecium U0317]
 gi|314937844|ref|ZP_07845160.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133a04]
 gi|314941335|ref|ZP_07848228.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133C]
 gi|314950094|ref|ZP_07853380.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0082]
 gi|314953752|ref|ZP_07856621.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133A]
 gi|314992804|ref|ZP_07858205.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133B]
 gi|314997963|ref|ZP_07862859.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133a01]
 gi|68196281|gb|EAN10710.1| Phage integrase:Phage integrase, N-terminal SAM-like [Enterococcus
           faecium DO]
 gi|257813687|gb|EEV42445.1| phage integrase [Enterococcus faecium 1,230,933]
 gi|257817400|gb|EEV44728.1| phage integrase [Enterococcus faecium 1,231,502]
 gi|257826578|gb|EEV53204.1| phage integrase [Enterococcus faecium 1,231,410]
 gi|260075293|gb|EEW63606.1| phage integrase [Enterococcus faecium C68]
 gi|291598796|gb|EFF29848.1| integrase [Enterococcus faecium U0317]
 gi|291605595|gb|EFF35037.1| integrase [Enterococcus faecium E1162]
 gi|313588024|gb|EFR66869.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133a01]
 gi|313592608|gb|EFR71453.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133B]
 gi|313594271|gb|EFR73116.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133A]
 gi|313599758|gb|EFR78601.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133C]
 gi|313642702|gb|EFS07282.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133a04]
 gi|313643535|gb|EFS08115.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0082]
          Length = 379

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 54/373 (14%), Positives = 121/373 (32%), Gaps = 47/373 (12%)

Query: 16  TRHGKIIYY---FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
            + G    Y   ++K  G+  ++      T   A  +A        + +   RK    L 
Sbjct: 5   VKRGNSWQYEISYKKDDGKYTKIRKSGFKTKGEAKDAANELEYNLNKGLKGDRKNLL-LS 63

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HTP 130
               ++ +    G+++  +   +E     I +         +     +  +      H  
Sbjct: 64  DYFEDWMQLYKEGTVSPITYRKYEDTLMNIKKYMPAVLISDLDRVGYQRFLNKYAKDHVK 123

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPC-LSVERPK--RKTEGIRPWTKEDMQQFKSFWS 187
           S+ I+F   +R   K AV +  +  +P   +V + K   K +  +    +  +       
Sbjct: 124 STVIKFNNHIRASLKDAVEEGLIPFDPTRKAVIKGKDSLKPKEDKYLDYDQFKSLMKLVE 183

Query: 188 EGSQPR----LAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK---------TQKTGTI 232
           E    +    +       +G+R ++      + +   + I +I            KT   
Sbjct: 184 ENLSAQYSSPMLVLVAGATGMRFAELLGLTWEDIDFEDQIITINKTWNYKLNEWGKTKNE 243

Query: 233 I----------TVELPD-------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKA 275
                      T++L            +   +       FF   +   +++   S + + 
Sbjct: 244 TSNRKISIDKHTIDLLKKFKINQKELFENFEIKNPHNFVFFNLKNGL-VSSNAVSKYLRK 302

Query: 276 KATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLG 332
           K  + G+ K  + HG+R   A+I    G     +    G  +++    TY        L 
Sbjct: 303 KLKELGIEKQFTLHGLRHTHASILLYQGVNILSVSKRLGHSSLETTMSTYLHIV--RELE 360

Query: 333 IKNSRRISSVVDS 345
            ++  +I++V DS
Sbjct: 361 DQDKEKINTVFDS 373


>gi|257438273|ref|ZP_05614028.1| integrase/recombinase, phage integrase family [Faecalibacterium
           prausnitzii A2-165]
 gi|257199350|gb|EEU97634.1| integrase/recombinase, phage integrase family [Faecalibacterium
           prausnitzii A2-165]
          Length = 327

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 33/248 (13%), Positives = 76/248 (30%), Gaps = 14/248 (5%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS----AIQFLTSMRVL 143
           +  +   +    + ++   G    ++ITT  +R  +   +    S           +   
Sbjct: 66  SEKTLTYYSKTIEAMLNGVGKSP-QQITTDDLRRYLTDYQTQRRSSKVTIDNIRRILSSF 124

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203
           F W   ++++  +P   + + K        +T E ++  +   S   +     + L  SG
Sbjct: 125 FSWLEDEDFIVKSPVRRIHKVKTAKIIRETYTDEALELMRDNCST-VRDLAIIDLLASSG 183

Query: 204 LRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG-----FMKLLAMTPIGKETFFIN 258
           +R  +      + +  N         G    +   D          L          F+ 
Sbjct: 184 MRVGELVTLNREDINFNERECVVFGKGNKERLVYFDARTKIHLQNYLDERSDSNPALFVT 243

Query: 259 --NDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKT 315
                +++         +    +  +NK   H  R+  AT + D G    ++    G + 
Sbjct: 244 LKEPHERLMIGGVETMLRELGRRLKLNKVHPHKFRRTLATSAIDKGMPIEQVQQLLGHQK 303

Query: 316 VDQAETYT 323
           +D    Y 
Sbjct: 304 IDTTMHYA 311


>gi|220934931|ref|YP_002513830.1| integrase family protein [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996241|gb|ACL72843.1| integrase family protein [Thioalkalivibrio sp. HL-EbGR7]
          Length = 361

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 48/301 (15%), Positives = 95/301 (31%), Gaps = 33/301 (10%)

Query: 56  PKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT 115
            K E    P + P T++ L   Y +         + +   E     ++ + G+     +T
Sbjct: 45  EKGELEPVPAQGP-TVEELARRYIEEYARQH-KRSWKRDHEHLERDVLPRLGEMLAGSVT 102

Query: 116 TKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEY--VAINPCLSVERPKRKTEGI 171
              IR  +        P +A + L   + ++ WA+  E   +  NPCL ++ P       
Sbjct: 103 RGDIREMLSGVAARGAPVAANRVLAVCKKMWNWALDHEVSGIETNPCLRIKPPAPTRSKE 162

Query: 172 RPWTKEDMQQFKSFW-----SEGSQP------RLAFEFLLYSGLRCSDSCRAGVQHLQNN 220
           R  T  +++   +         G +       R+A + +L +G R  +     +  L   
Sbjct: 163 RVLTMSEIRTLLAALDRDEMPAGCRAWPTRATRVAIQLILLTGQRPGEVAGMALTELDRQ 222

Query: 221 IFSIK----TQKTGTIITVELPDGFMKLLA-----MTPIGKETFFINNDK------QKMN 265
                      K G    V +  G  +L+               F +  +      + + 
Sbjct: 223 DGWWTIPGERAKNGRAHRVPICAGAKRLIDEALALRLDPKSAYVFPSPRRSGGRRDRAIA 282

Query: 266 ATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           A   S          G+   +AH +R+  A+  A  G +   +              Y +
Sbjct: 283 AEAISRAVTRLREHVGIPHWTAHDLRRTCASHLAGLGVSREVIARLLNHTDRSVTSIYER 342

Query: 325 G 325
            
Sbjct: 343 Y 343


>gi|308272076|emb|CBX28684.1| hypothetical protein N47_G40080 [uncultured Desulfobacterium sp.]
          Length = 312

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 40/269 (14%), Positives = 77/269 (28%), Gaps = 28/269 (10%)

Query: 99  FDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF---LTSMRVLFKWAVRQEYVAI 155
                +  G+   R I T  + +    RK +  S       + + R +   A     V+ 
Sbjct: 35  LSSFNKVFGETIVRNIKTSDLENYQAKRKASGYSNSYIDQEIGAARSVVYKAFDDAMVSE 94

Query: 156 NPCLSVERPKRKTEGI-----RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210
           +   + ++ K+  +       +    E+ ++        +  R       Y+G+R  +  
Sbjct: 95  DTVRAFKKVKKLLKSNANTRKKVLYIEEFKRLMEALPPHT--RAVVAMGYYTGMRKGEII 152

Query: 211 RAGVQ--HLQNNIFSIKTQ--KTGTIITVELPDGFMKLLAMTP--IGKETFFINNDKQKM 264
                   L++ +  +     K      V + D    +L   P  I     F+   K   
Sbjct: 153 NLTWDKVDLKDRMIKLDAADTKDREAREVPICDALYNILKDIPKAIHDNHVFLFKGKP-- 210

Query: 265 NATQFSIWFKAKATKAGVNKS--------AHGVRKFSATISADAGATAHELMATYGWKTV 316
               F    +      G+            H  R    T    +G     +M   G  T 
Sbjct: 211 -VNDFRTALRTACRAVGIPYGRGTKDGFVFHDTRHCFNTNMRKSGVPESVVMNITGHSTR 269

Query: 317 DQAETY-TKGADRIRLGIKNSRRISSVVD 344
           +    Y T  A  I+  +         VD
Sbjct: 270 EMFLRYDTVDAKDIKKAVNQMEGFLESVD 298


>gi|260663670|ref|ZP_05864559.1| integrase [Lactobacillus fermentum 28-3-CHN]
 gi|260551896|gb|EEX25011.1| integrase [Lactobacillus fermentum 28-3-CHN]
          Length = 362

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 48/354 (13%), Positives = 113/354 (31%), Gaps = 45/354 (12%)

Query: 1   MTPSLRLPPF---VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPK 57
           M+   + P     V + R  +GK     +KG G           TF     +       +
Sbjct: 1   MSFVKKRPKGYYGVAEYRDSNGK---RHQKGAG-----------TFKLKREALAAADKLE 46

Query: 58  REYINSPRKKPT-TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT 116
           RE      +    +       + +     S+   +++ + +    I    G     +I  
Sbjct: 47  RELNGLNTELANLSFAEYYQRWYRLYKEHSVEPITQVRYRTVGKLIADFFGQKKIAEIHR 106

Query: 117 KHIRSGVESRKHTP--SSAIQFLTSMRVLFKWAVRQEYVAINPCLSV--ERPKRKTEGIR 172
              +  +    H     + I+  +++R+    A+  + +  +   +V     K++   I 
Sbjct: 107 SDYQEFINWYGHDKVKDTVIKVNSAVRLCVNSAIDDDLIIKDFTHNVQITHDKQQRPKIE 166

Query: 173 PWTKEDMQQFK----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---------- 218
              +++++Q +    +     +  R      + +G+R S+      + +           
Sbjct: 167 YLNEKEIRQLESATANKLDHNNTSRYMILTAILTGMRKSEIQALTWKDIDFLHATISITK 226

Query: 219 ---NNIFSIKTQKTGTII-TVELPDGFMKLLAMTPIGKET-FFINNDKQKMNATQFSIWF 273
                  + K  KT + I T+++    +  L    +   T  F+N       +T      
Sbjct: 227 SWDEQKKTFKPTKTESSIRTIKVNRQLLDWLEDLKVNGSTLIFMNKLGTIPTSTALIKVL 286

Query: 274 KAKATKAGVNKS---AHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYT 323
           +   T  G++K     H +R          G   + +    G   +    +TY+
Sbjct: 287 RTIMTDCGISKQGFHFHSLRHVHVAYLLGQGVDVYAISKRLGHSDITITLKTYS 340


>gi|75812896|ref|YP_320513.1| Phage integrase [Anabaena variabilis ATCC 29413]
 gi|75705652|gb|ABA25324.1| Phage integrase [Anabaena variabilis ATCC 29413]
          Length = 360

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 51/325 (15%), Positives = 108/325 (33%), Gaps = 51/325 (15%)

Query: 53  GSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESY----FDQIIRKSGD 108
                 +Y    R+K  + + LI  +  S      +  +R ++        D +  + G 
Sbjct: 24  ARVALVDYYFPNRQKINSTQQLIELWVHSVTIK--SDQTRRAYRQIGYELVDYMQSRFGI 81

Query: 109 FDYRKITTKHIRSGVESRKH-------------TPSSAIQFLTSMRVLFKWAVRQ--EYV 153
            D R +T  H+ + +   K              + ++A ++  +++ L++W  R    Y 
Sbjct: 82  SDLRMVTLFHLHAYLAWLKDEKPVRGKKNTYGISKNTAAKYTAAIKSLWEWGTRASIGYF 141

Query: 154 AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR-------LAFEFLLYSGLRC 206
           AI+    +          R  ++ ++ + +                 L F  + YSG+R 
Sbjct: 142 AIDLGKDLSIQWDDKLAERILSEREIAKLEKAAMAVDLQHNTNKMHWLLFTLMFYSGVRA 201

Query: 207 SDSCR-------------AGVQHLQNN---IFSIKTQKTGTIITVELPDGFMKLL---AM 247
            +  R                +  + +   +    T K     T+ L      +L     
Sbjct: 202 GEIARQTSDYGKRVITPGLFWRQFREDGDCLLLTVTGKRNKTRTISLDPETSAVLLDYRG 261

Query: 248 TPIGKETFFIN----NDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGAT 303
                   F +    +  + ++     +  +  +T AG+  SAH +R   AT++   GA+
Sbjct: 262 DASNDRPVFPSPSRRDRGKPLSDRGLRLMMEEISTCAGIKFSAHFLRHTHATLAKKNGAS 321

Query: 304 AHELMATYGWKTVDQAETYTKGADR 328
             +L A  G  +      Y     R
Sbjct: 322 DFDLQADLGHASPATTAKYIHHVGR 346


>gi|260567497|ref|ZP_05837967.1| tyrosine recombinase xerD [Brucella suis bv. 4 str. 40]
 gi|261755736|ref|ZP_05999445.1| tyrosine recombinase xerD [Brucella suis bv. 3 str. 686]
 gi|34222805|sp|Q7ZAN6|XERD_BRUSU RecName: Full=Tyrosine recombinase xerD
 gi|260157015|gb|EEW92095.1| tyrosine recombinase xerD [Brucella suis bv. 4 str. 40]
 gi|261745489|gb|EEY33415.1| tyrosine recombinase xerD [Brucella suis bv. 3 str. 686]
          Length = 309

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 43/272 (15%), Positives = 93/272 (34%), Gaps = 32/272 (11%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHT---PSSAIQFLTS 139
              A N+  S+    +    +      +  +  T HIR  +++       P+S  + L++
Sbjct: 20  RGAAQNTLESYRRDLEAAAEELAAKGVNLAEAETGHIRMTLDTMAAQGFAPTSQARRLSA 79

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS------------ 187
           +R  F++   + +   +P   ++ PK++    +  + E++ +     +            
Sbjct: 80  LRQFFRFLYSEGFRQDDPTGILDAPKKQKPLPKIMSVENVGRLLDRAALEANEAAEPGER 139

Query: 188 -EGSQPRLAFEFLLYSGLRCSDSCRAGVQ-HLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
            +  +     E L  +GLR S+     V     ++ F +   K      V L       L
Sbjct: 140 IKALRLHALLETLYATGLRVSELVGLPVTVARTDHRFLLVRGKGSKDRMVPLSRKARDAL 199

Query: 246 AM-------TPIGKETFFIN---NDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKF 292
                     P   +  ++    ++   +    F+   K  A +AG+     S H +R  
Sbjct: 200 QKFLTLRDSLPGSDDNPWLFPAFSESGHLARQVFARELKGLAARAGLAASSVSPHVLRHA 259

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324
            A+     GA    +    G   +   + YT 
Sbjct: 260 FASHLLQNGADLRTVQQLLGHADISTTQIYTH 291


>gi|21221683|ref|NP_627462.1| integrase [Streptomyces coelicolor A3(2)]
 gi|4490997|emb|CAB38894.1| putative integrase [Streptomyces coelicolor A3(2)]
          Length = 384

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 51/298 (17%), Positives = 98/298 (32%), Gaps = 36/298 (12%)

Query: 85  GSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMR 141
               +++   +E++    ++   G      +    +R  +    ++ T ++A +    +R
Sbjct: 87  PRRKLSTYDKYEAHVRLYLVPLLGAKRLESLGVADVRRFLVRLEKETTAATAKESHRVLR 146

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201
                A R+E +  N    VE P+  +  ++PWT ++   F +  S       AF   + 
Sbjct: 147 SALTSACREELITRNVAKLVEPPRTDSRELKPWTLDETLDFLA-ASRKDPLYAAFVLAIA 205

Query: 202 SGLRCSDSCRAGVQ--HLQNNIFSIKTQ-------------KTGTIITVELPD------- 239
            GLR  +          L N +  ++ Q             K+     V LP        
Sbjct: 206 MGLRRGEIIGLRWSDLDLDNRVLYVRQQTQRRRGVLYDDDPKSRRRRAVPLPALCIAPLR 265

Query: 240 --GFMKLLAMTPIGKE-----TFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRK 291
                +  A    G++       F     +++        F   A  AG+     H  R 
Sbjct: 266 WHRMRQAAARIKAGEQWQESGYVFTTRTGRQVEPRNVYRSFTRVAESAGLRVIRLHDARH 325

Query: 292 FSATISADAGATAHELMATYGWKTVDQA-ETYTKGA-DRIRLGIKNSRRISSVVDSDD 347
            +AT+   AG     +M   G   +    + YT    D  R  + +  R+      D 
Sbjct: 326 GTATLLTAAGVAPRVVMEILGHSQISITMDVYTHVVQDTQREAMSHMDRLLRKRRPDR 383


>gi|118477873|ref|YP_895024.1| phage integrase [Bacillus thuringiensis str. Al Hakam]
 gi|118417098|gb|ABK85517.1| phage integrase [Bacillus thuringiensis str. Al Hakam]
          Length = 317

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 41/290 (14%), Positives = 92/290 (31%), Gaps = 42/290 (14%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD-------------YRKITTKHIRS 121
           I EY +     +L+  +  S+E+   +        +                IT++H++ 
Sbjct: 7   IKEYIEDRSLENLSRRTLESYENTLTEFRLWLNGCNGNEEEASSRSITHIEDITSQHVKG 66

Query: 122 GV----ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPWT 175
            +    + R+++ ++    LT+++V F +   +  +    NP L V+ P++ T      T
Sbjct: 67  YMRYCYQERRNSHTTVAGKLTNIKVYFNYLANEGLIDERDNPILRVKNPQKDTNV-ETLT 125

Query: 176 KEDMQQFKSFWSE--------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK 225
           +E ++                  +      FLL +G R  +      + +   +      
Sbjct: 126 EEQVRLMLRHLRRRRRVDDFYHYRDYTLVVFLLGTGARLGEIMDLCWKDIDLKDGQVVFP 185

Query: 226 TQKT-----GTIITVELPDGFMKLLAMTPIGK----ETFFINNDKQKMNATQFSIWFKAK 276
                    G  +  +L     +                F     +K++     + F   
Sbjct: 186 ATGKARTQQGQPLGAKLVSELKEYKQYLENDTYGLPAYLFTTRTGRKLSREAIKLVFVRL 245

Query: 277 ATKAGVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           A +        SAH +R F  +    AG +   +        ++    Y 
Sbjct: 246 AQELKFEYGRVSAHSLRHFYCSSLIKAGVSPFVVQKLMRHSKIETTMKYV 295


>gi|329936187|ref|ZP_08285980.1| phage integrase [Streptomyces griseoaurantiacus M045]
 gi|329304297|gb|EGG48177.1| phage integrase [Streptomyces griseoaurantiacus M045]
          Length = 415

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 67/386 (17%), Positives = 106/386 (27%), Gaps = 68/386 (17%)

Query: 14  ERTRHG-KIIYYFRK--GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
           +  R+G  + Y  R     G      +P     +     A   +   R     PR    T
Sbjct: 24  KTERYGSGLRYRARYVGPDGTEKAKSFPDRQKRLADQWLAHIEADMARGQYIDPRAARIT 83

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH- 128
            +     +  +        N++ S ES          G          HIR  V   +  
Sbjct: 84  FQQYAERWVAT---QGADPNTQASMESQLRLHAFPYLGSRPLGSFQPAHIRDWVRQLQEN 140

Query: 129 --TPSSAIQFLTSMRVLFKWAVRQEYVAINP--CLSVERPKRKTEGIRPWTKEDMQQFKS 184
               S A    +++R     AV   ++  NP    SV  P    + I PWT E +   ++
Sbjct: 141 GVRGSYARTIYSNVRAALSAAVDDGHLPRNPCAARSVRPPTVDAKRIVPWTPERVFAVRA 200

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQ-------------KT 229
              E  + R   +     GLR  +     V      ++   +  Q             K 
Sbjct: 201 AMPE--RFRAMVDLGAGCGLRQGEILGVAVDAIDFDSDTLHVVQQLKLSRSKAVFAPPKG 258

Query: 230 GTIITVELPDGFMKLLAM-------------------TPIGKETFFINNDKQKMNATQFS 270
           G +  V LP      L                      P+ K   F       +  T  +
Sbjct: 259 GKLRDVPLPGPVADALRTHMKEFPPVEITLPWKVADGPPVTKRLIFTGPRGGHVWRTSLN 318

Query: 271 --IWFKAKATKAGVNK-------------SAHGVRKFSATISADAGATAHELMATYGWKT 315
             +W +A A    +                 H +R F A++  DAG     L    G   
Sbjct: 319 EEVWKRALAAAGAIPVPERGRPYAESRENGMHALRHFYASVLLDAGENIKALAEYLGHSD 378

Query: 316 VD-QAETYTK----GADRIRLGIKNS 336
                  Y        +R R  +   
Sbjct: 379 PGLTLRVYAHLMPSSRERTRKAVAAV 404


>gi|329963190|ref|ZP_08300927.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
 gi|328528886|gb|EGF55826.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
          Length = 412

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 45/287 (15%), Positives = 101/287 (35%), Gaps = 32/287 (11%)

Query: 85  GSLAVNSRISFE---SYFDQIIRKS---GDFDYRKITTKHIRSGVESRKH----TPSSAI 134
              A+ +   +E    Y  ++IR+     D    ++  + +R+     K       ++ I
Sbjct: 130 KDYALITVRRYESCKRYLAELIRQKYEKDDLPLAEVNGELVRAFEFYLKTEKECQQNTVI 189

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WSEGSQ 191
           +++  ++ +   A+  E++A +P + ++  +++       T +++             + 
Sbjct: 190 RYMKCLKKITNLALANEWIAKDPFIGIKFHEKEVI-REFLTMDELLTIYHKEFPLERITV 248

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHL-----QNNIFSIKTQKTGTIITVELPDG----FM 242
            R  F F  ++GL   D  +   +H+      N       QKT  +  + L D       
Sbjct: 249 VRDVFIFAAFTGLAFIDVQQLSPEHIVKDNNGNLWIRKPRQKTKNMCNIPLLDIPLEILR 308

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS-AD 299
           K        K+   +          + + + K  A    + K  + H  R   AT     
Sbjct: 309 KYADYPASKKKGVLL----PVPCNQKMNSYLKEIANLCQIKKNLTTHRARHSYATSVCLA 364

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346
            G +   +    G   +   + Y +  D   L  K+   + SV+ S+
Sbjct: 365 NGVSIENVTKMLGHSNIKMTQHYARVLDSSIL--KDMNNVRSVLSSN 409


>gi|227903645|ref|ZP_04021450.1| bacteriophage integrase [Lactobacillus acidophilus ATCC 4796]
 gi|227868532|gb|EEJ75953.1| bacteriophage integrase [Lactobacillus acidophilus ATCC 4796]
          Length = 385

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 72/382 (18%), Positives = 125/382 (32%), Gaps = 71/382 (18%)

Query: 13  KERTRHGKIIY----YF----RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64
           +  T  GK  Y    Y       GH  +IR                      K EYI   
Sbjct: 7   EYTTPSGKKRYGFNLYVGVDETTGHSIQIRKQGYKSKKEAQEAYLNYQLKIIKGEYIPES 66

Query: 65  RKKPTTLKWL----ISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHI 119
           +    T   L    +  YR++    + A  +R     YF D I+++ G     K+T    
Sbjct: 67  KGH-ITFNKLYEMWLKLYRETVKTSTYATTTR-----YFEDHILKQLGSKYIDKLTVLDC 120

Query: 120 RSGVE-SRKHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTK- 176
           +  V       P +  +F+     +  + +   E ++ NP   V  PK K E  +P+T  
Sbjct: 121 QKAVNIWFNDAPKTYKRFMRYTNNVLNYGINNLELISKNPMNKVIPPKAKNE-PKPFTDF 179

Query: 177 ---EDMQQFKSFWSE-GSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTG 230
              +++  F     E   +  + F  L YSG+R  ++       +  ++N  SI      
Sbjct: 180 YSKDELNTFLRNAKEYNFKYFVFFRLLAYSGMRKGEALALKWSDINFKDNTISIN----- 234

Query: 231 TIITVELPDGFMKLLAMTPIG-----------------------------------KETF 255
             +TV L +   +    T                                          
Sbjct: 235 KDVTVGLNNELYEDTPKTENSFRTLDMDATTMEYLKEWRLMQQKTMLELGYNFLNIDNLL 294

Query: 256 FINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWK 314
           F   +   ++ ++   W  A   K  + +   HG R   A++  +AGA+ +E+ A  G  
Sbjct: 295 FPTINNGYLSMSKPRQWNVAICKKYDLRRIKIHGFRHTHASLLFEAGASMNEVKARLGHA 354

Query: 315 TVDQAE-TYTKGADRIRLGIKN 335
            ++     YT   D  +    N
Sbjct: 355 DINTTMNIYTHVTDDQKKDTAN 376


>gi|168820689|ref|ZP_02832689.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|205342754|gb|EDZ29518.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
          Length = 359

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 46/283 (16%), Positives = 96/283 (33%), Gaps = 26/283 (9%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI----RSGVES 125
           T+     +Y       +L+ N+     +  + I  K G     +++T+HI     + +  
Sbjct: 75  TVTKWAEQYEILLKRRNLSANTYKIRGNQLETIKEKIGRMLLIEVSTRHIAEFLETWIAE 134

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
            K+T + A++  + +  +F+ A+ + ++A NP      PK +    R       +  ++ 
Sbjct: 135 GKNTMAGAMR--SVLSDMFREAIVRGHIAHNPVEPTRSPKIEVARDRLRLDVYNKIREAA 192

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK-- 243
               +   LA +  L +G R  D       H+ +    +K  KTG  I + L        
Sbjct: 193 EQLPAWFPLAMDLALVTGQRREDLSCMKFSHIIDERLYVKQIKTGMKIALPLSLNLPSMG 252

Query: 244 ------LLAMTPIGKETFFINNDKQKMN------ATQFSIWFKAKATKAGVNKS-----A 286
                 +     + +  + I+   +K +          +  F A     G+N S      
Sbjct: 253 LRLSTVIDRCRLVSRSEYLISAGIRKNSPNGSIHPDSLTKKFVAARKLTGINFSENPPPF 312

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           H +R   +                 G  + +  + Y    D  
Sbjct: 313 HEIR-SLSGRLYKDAYGEGFAQKLLGHTSENTTKMYLDERDEK 354


>gi|29565931|ref|NP_817502.1| gp53 [Mycobacterium phage Cjw1]
 gi|109302806|ref|YP_654808.1| gp53 [Mycobacterium phage 244]
 gi|194303347|ref|YP_002014372.1| gp51 [Mycobacterium phage Porky]
 gi|29424656|gb|AAN01667.1| gp53 [Mycobacterium phage Cjw1]
 gi|88910097|gb|ABD58028.1| gp53 [Mycobacterium phage 244]
 gi|194150832|gb|ACF33868.1| gp51 [Mycobacterium phage Porky]
 gi|255928372|gb|ACU41988.1| gp54 [Mycobacterium phage Pumpkin]
          Length = 293

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 46/288 (15%), Positives = 103/288 (35%), Gaps = 24/288 (8%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-T 129
           L  L   +         +  +  ++    +  +    + +   +    + + V S     
Sbjct: 6   LAELKDSWLMELRAARKSAETIRAYGGSVEGYLNFCVEGELAPLEKASLLAWVNSMASLQ 65

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
           P++    LT+++   +W   +E V ++  L V  PK   + ++  +   +Q   +  +  
Sbjct: 66  PATVHLRLTAVKQFMRWVADEEGVNVDGLLVVRPPKLDQKVVKHLSDRAVQALVATCAGN 125

Query: 190 S----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDG--- 240
           +    + +        +G+R ++     V+ +   +   +++  K      V+       
Sbjct: 126 TFRDRRDKALIVLFTETGIRAAEMLALDVEDVSLVDCQLTVRRGKGAKGRRVKYSPMCAA 185

Query: 241 ----FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSAT 295
               +++       G E         +++ T      K +A  AGV     H +R  SA 
Sbjct: 186 TIDKYLRARRRAGHGSEGPLWIGLGGRLSYTGMKSSLKRRADDAGVPGFHPHRLRHTSAV 245

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGA---------DRIRLGIK 334
               AG +   LMA  GW++  Q + Y K A         DR+ L ++
Sbjct: 246 RWLKAGGSEAGLMAQAGWQSRRQIDRYIKSAAEELASDEFDRLNLSVE 293


>gi|313903463|ref|ZP_07836854.1| integrase family protein [Thermaerobacter subterraneus DSM 13965]
 gi|313466284|gb|EFR61807.1| integrase family protein [Thermaerobacter subterraneus DSM 13965]
          Length = 383

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 38/275 (13%), Positives = 96/275 (34%), Gaps = 43/275 (15%)

Query: 85  GSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVE----------SRKHTPSSA 133
             +A  +   +E   ++ +I   G +  +K+   HI++                 +  + 
Sbjct: 78  SRVAPTTFHRYEIIVERHLIPALGKYQLQKLRPAHIQAYYRDALENGRRDGKGGLSKRTV 137

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
           +     +    + AV+ + +A NP  +V+ P+ + + +R   K+++++     +  S+  
Sbjct: 138 LHHHRVLHEALEHAVQLQMLARNPADAVKPPRPERKEMRVLDKDEIERLLET-ARRSRYY 196

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ--KTGTII--TVELPDGFMKLLAM 247
           +     + +G+R  +      + +       S++    KTG  +  T    D   +++ +
Sbjct: 197 IPILLAIATGMRRGEILALRWEDVDLEGGRISVRQTLVKTGDGLQFTDPKTDRSRRVIRI 256

Query: 248 TPI------------------------GKETFFINNDKQKMNATQFSIWFKAKATKAGV- 282
            P+                                 + +  +  +FS  F + A +AG  
Sbjct: 257 GPLVVQALRRHRAQQAQEKLRLGPAYQDHGLVCAQANGKPYDPAEFSKAFTSLAKRAGFP 316

Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVD 317
           +   H +R   AT+    G     +    G  +  
Sbjct: 317 DLRFHDLRHSHATLLLRDGTPIKAVAERLGHASAA 351


>gi|296445247|ref|ZP_06887206.1| integrase family protein [Methylosinus trichosporium OB3b]
 gi|296257202|gb|EFH04270.1| integrase family protein [Methylosinus trichosporium OB3b]
          Length = 438

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 51/331 (15%), Positives = 101/331 (30%), Gaps = 42/331 (12%)

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYR 112
               +    + R     ++ +   Y       +    S    E   ++ I+         
Sbjct: 98  KQEAKRQAAAARPAHDLIENVCVSYIDRQAKPNTREASWREVERILNKEIVPAWRGRRLG 157

Query: 113 KITTKHIRSGVESRKHTPSS--AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170
            IT   I   ++  K  P+   A + L + R +  WA+ +  +  +PC  V+ P  +T  
Sbjct: 158 DITRGDIHELLDKIKDRPAPILANRTLAAFRRVCNWAIGRGIIEASPCDRVKAPVAETSR 217

Query: 171 IRPWTKEDMQ----QFK-SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225
            R  +  +++     F  + W  G   +     LL +G R  +        +        
Sbjct: 218 DRVLSDNELRLTWGAFDGAGWPFGPIGK----LLLLTGARRDEVAHMTWSEVDLAGKLWT 273

Query: 226 ----TQKTGTIITVELPDGFMKLLAMTPIGK------ETFFINNDKQKMN-----ATQFS 270
                 K G    V L    + +L   P  +         F    K  ++       QF 
Sbjct: 274 IPKERAKNGAAHEVPLSATAVAILKGLPKIEGGKDAPGYIFTTTGKTPVSGFSKAKDQFD 333

Query: 271 IWFKAKATKAGVN---------KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE- 320
                    A  +          + H +R+  A+  A  G   H + A    ++      
Sbjct: 334 AAILEAMQAAAADPETVKAPERWTLHDLRRTCASGMAGLGIAPHVVEAVLNHRSGTIKGV 393

Query: 321 -----TYTKGADRIRLGIKNSRRISSVVDSD 346
                 Y+  A++       +RR+ ++V   
Sbjct: 394 AAVYNRYSYSAEKRAALDAWARRLDAIVTGR 424


>gi|193064851|ref|ZP_03045928.1| site-specific recombinase, phage integrase family [Escherichia coli
           E22]
 gi|192927536|gb|EDV82153.1| site-specific recombinase, phage integrase family [Escherichia coli
           E22]
          Length = 376

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 58/377 (15%), Positives = 115/377 (30%), Gaps = 64/377 (16%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKR-------- 58
           L P+  K   R+ K+ + +R     +       +        +       ++        
Sbjct: 14  LSPYFDK---RNNKVYWRYRHPITGKNHGLGSIDQKLAETIAAEANSRLARQQMEQMLSL 70

Query: 59  -EYINSPRKKPTTLKWLISEYRKS----AHWGSLAVNSRISFESYFDQIIRKSGDFDYRK 113
            E I +     +T+   ++ YRK        G + +N+     +       + G      
Sbjct: 71  QEKIINDTGGSSTVSIFLNNYRKIQQERYENGEIKLNTLKQKAAPLRVFDERFGTRPLDA 130

Query: 114 ITTKHIRSGVESRKHTPSSAIQ--FLTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTE 169
           IT K + S +E  K    + +   F   +  +F+ A +   +    NP  S ++P+    
Sbjct: 131 ITVKDVVSVLEEYKARGHNRMGQIFRKVLIDVFREAQQTGDIPPGFNPAESAKKPQV-RI 189

Query: 170 GIRPWTKEDMQQ-FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
             +  T ++    + +   +G   +      L +G R SD C+     +++    ++ QK
Sbjct: 190 SRQRLTFDEWMMIYNAAEKDGYFLQRGMLLALVTGQRLSDICKMQFSDIRDGYLHVEQQK 249

Query: 229 TGTIITVE-----------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265
           TGT I +                        L    +         K           + 
Sbjct: 250 TGTRIAIPLALRCDKLNLTLDDVVSSCRDCVLSPWLLHHHHAKGTAK-------RGGMVK 302

Query: 266 ATQFSIWFKAKA-------TKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
               ++ FK             G   S H  R  S  +  + G     L    G      
Sbjct: 303 PATLTVAFKKARDSVDYNWRANGTPPSFHEQRSLSERLFREQGIDTKIL---LGHSNQKM 359

Query: 319 AETY--TKGADRIRLGI 333
            + Y   +G +  +L I
Sbjct: 360 TDIYNDARGKEWKKLVI 376


>gi|315182768|gb|ADT89681.1| site-specific recombinase IntIA [Vibrio furnissii NCTC 11218]
          Length = 329

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 46/303 (15%), Positives = 99/303 (32%), Gaps = 62/303 (20%)

Query: 83  HWGSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVE----SRKHTPSSAIQ 135
            +  +   +R + ESY   +   IR  G+    K+  + + + +     S++   S+   
Sbjct: 11  QFMQVRHYARKTIESYLYWVVQYIRFHGNQHPNKLGNRDVEAFLSDLVVSKQVAASTQNL 70

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195
            L ++  L+K  +++    ++  L     K++ +     T  ++++  +     +   L 
Sbjct: 71  ALNALVFLYKEFLKK---PLDIDLRFRHSKKQRKLPVVLTPTEIKKLFAAIPAQT--LLP 125

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLAMTPIGKE 253
           ++ +  SGLR  ++ R  V+ +  +  +I+    K G    V L      LL       +
Sbjct: 126 YQLVYGSGLRLMETIRLRVKDIDFDYGAIRVWQSKGGKSRIVTLAKELHPLLRFQIETVK 185

Query: 254 TFFINN----------------------------------------------DKQKMNAT 267
             +  +                                               +  ++ T
Sbjct: 186 HLYTQDQLNPNYDGVQMPNRIAEKYPSASKSLEWQFLFPAKQLCRYGDEPGWYRHHLHET 245

Query: 268 QFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
                       A + K  S H +R   AT   +AGA    +    G   V   + YT  
Sbjct: 246 TLQKTIIKARFTAEIAKPLSCHTLRHSFATHLLEAGADIRTVQEQLGHSDVKTTQIYTHV 305

Query: 326 ADR 328
            +R
Sbjct: 306 IER 308


>gi|288916689|ref|ZP_06411064.1| integrase family protein [Frankia sp. EUN1f]
 gi|288351944|gb|EFC86146.1| integrase family protein [Frankia sp. EUN1f]
          Length = 406

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 50/281 (17%), Positives = 87/281 (30%), Gaps = 44/281 (15%)

Query: 85  GSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR--------------KHT 129
            SL  ++   + +Y D  I    G+   +++T   I                       +
Sbjct: 78  PSLRPSTWSKYRTYCDSYIKPVIGNTALQELTPVRINLLYAHLLTSGRRHQRTNQGAGLS 137

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
           P S       +    + AVR  Y+  NP   VERPK        WTKE ++ F      G
Sbjct: 138 PGSVAVVHRVLHRALRDAVRWNYLVRNPSDDVERPKLDRRVPTVWTKEQLRTFVD-HVRG 196

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ---------------KTGTIIT 234
            +    +   + +GLR           +  +  ++ +                KT +   
Sbjct: 197 DRLYALYLVAITTGLRRGALVGLRRHDVDLDAGTLSSSRPRIVVDNKAVDGEHKTDSAYR 256

Query: 235 VELPDGFMKLLAMTPIGK------------ETFFINNDKQKMNATQFSIWFKAKATKAGV 282
             + D          + +            +  F   D   ++    + WF+A A  AG+
Sbjct: 257 PLVLDPVTAKALRVHVDRWEQERTEFGFTTDLLFCWPDGTGIHPDTVTDWFQAHAKSAGL 316

Query: 283 NK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
                H VR   AT +  +G     +    G  +V     Y
Sbjct: 317 PVIRLHDVRHSYATAALKSGVHPKIVSERLGHASVAFTLAY 357


>gi|119473240|ref|ZP_01614917.1| putative integrase [Alteromonadales bacterium TW-7]
 gi|119444534|gb|EAW25851.1| putative integrase [Alteromonadales bacterium TW-7]
          Length = 323

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 44/310 (14%), Positives = 97/310 (31%), Gaps = 62/310 (20%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----SRKH 128
             I++Y  +  +   ++ +  ++ S+    I          +    + + ++     R  
Sbjct: 9   NYIADYMLTRQY---SLRTINAYLSWIANFIHFHNKRHPSSMGDSEVEAFLDHIVLKRNM 65

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           +  +    L ++  L+K  V+ E  ++N  L+  R KR+ +     T ++++Q     S+
Sbjct: 66  SAKTQCAALNALAFLYKHIVKNEL-SLN--LNFARSKRQPKLPVVMTPDEVKQLMVHLSK 122

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLLA 246
             +  L    +  SGLR  ++ +  V+ +  +     I   K      V L    + LL 
Sbjct: 123 --RYYLIVGLMYGSGLRVMEAVQLRVKDIDFDYKCIQIWNGKGNKHRIVTLATELLPLLR 180

Query: 247 MTPIGKETFFINN----------------------------------------------D 260
              +  E +   +                                               
Sbjct: 181 NQIMQVEEYLRLDLQNEQYAGVWMPNALARKYPSANKSLAWQYLFPSYKLSSDPETGEIR 240

Query: 261 KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           +   + T      K    +  + K  + H  R   AT    +G+    + A  G   V  
Sbjct: 241 RHHFHPTCVRKAVKKALKQTNITKIVTPHTFRHSFATHLLQSGSDIRTVQAQLGHTDVKT 300

Query: 319 AETYTKGADR 328
            + YT    +
Sbjct: 301 TQIYTHVLQQ 310


>gi|296101651|ref|YP_003611797.1| site-specific recombinase, phage integrase family [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
 gi|295056110|gb|ADF60848.1| site-specific recombinase, phage integrase family [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
          Length = 387

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 58/355 (16%), Positives = 111/355 (31%), Gaps = 52/355 (14%)

Query: 17  RHGKIIYYFRKGHGRRIRLP-YPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75
           R G    +F    G+RIR      +          L     + + I        T +   
Sbjct: 6   RGGVWHCHFVTPSGKRIRRSLGTGDKKQAQELHDKLKAEAWRVDKIG--ELPTRTFEECC 63

Query: 76  SEYRKSAHWGSL--AVNSRISF------ESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127
             + +            ++I +            I     +    K+  +      ESR+
Sbjct: 64  IRWIREKEHKRSLDDDKTKIEYFLRHFSGRDISTITADQVNEAVSKMVNRKHIQVWESRR 123

Query: 128 HTP-----------------SSAIQFLTSMRVLFKWAV-RQEYVAINPCLSVERPKRKTE 169
                               ++  Q L+ MR LFK A     ++   P +  ++P  K  
Sbjct: 124 DAAIRRGKEPPPYVEKPVSHATKSQHLSFMRSLFKAAANDWGWIKTPPVIKTKKPISKRI 183

Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIK 225
                T+++ ++  +   E  +P + F     +GLR S+      Q +         + +
Sbjct: 184 RW--LTRDEAERLIACMPESIKPVVIFALA--TGLRRSNIIDLEWQQVDMQRKVAWVNPE 239

Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA--TQFSIWFKAKAT----- 278
             K G  I V L D   ++L    IGK + ++    +         +   +         
Sbjct: 240 NAKAGKAIGVALNDTACRVLRDQ-IGKSSRWVFVHTKPSTRPDKTVTPAVRKMRVDDNSA 298

Query: 279 ------KAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
                 KAG+ +   H +R   A+    +G     L    GW++++    Y   A
Sbjct: 299 WRIGLAKAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLA 353


>gi|218689203|ref|YP_002397415.1| phage integrase [Escherichia coli ED1a]
 gi|218426767|emb|CAR07610.1| phage integrase [Escherichia coli ED1a]
          Length = 376

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 59/367 (16%), Positives = 111/367 (30%), Gaps = 59/367 (16%)

Query: 16  TRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKR---------EYINSPRK 66
            R+ K+ + +R     +       +        +       ++         E I S   
Sbjct: 20  KRNNKVYWRYRHPITGKNHGLGSIDQKLAETIAAEANSRLARQQMEQMLSLQEKIISDTG 79

Query: 67  KPTTLKWLISEYRKS----AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122
             +T+   ++ YRK        G + +N+     +       + G      IT K + S 
Sbjct: 80  GSSTVTIFLNNYRKIQQERYENGEIKLNTLKQKAAPLRVFDERFGTRPLDAITVKDVVSV 139

Query: 123 VESRKHTPSSAIQ--FLTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPWTKED 178
           +E  K    + +   F   +  +F+ A +   V    NP  S ++P+ +    R    E 
Sbjct: 140 LEEYKARGHNRMGQIFRKVLIDVFREAQQTGDVPPGFNPAESAKKPQVRISRQRLTFDEW 199

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE-- 236
           M  + +   +G   +      L +G R SD C+     +++    ++ QKTGT I +   
Sbjct: 200 MMIYNAAEKDGYFLQRGMLLALMTGQRLSDICKMQFSDIRDGYLHVEQQKTGTRIAIPLA 259

Query: 237 ---------------------LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKA 275
                                L    +         K           +     ++ FK 
Sbjct: 260 LRCDKLNLTLDDVVSSCRDCVLSPWLLHHHHAKGTAK-------RGGMVKPATLTVAFKK 312

Query: 276 KA-------TKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY--TKGA 326
                       G   S H  R  S  +  + G     L    G       + Y   +G 
Sbjct: 313 ARDSVDYNWRANGTPPSFHEQRSLSERLFREQGVDTKIL---LGHSHQKMTDIYNDARGK 369

Query: 327 DRIRLGI 333
           +  +L I
Sbjct: 370 EWKKLVI 376


>gi|189184773|ref|YP_001938558.1| site-specific tyrosine recombinase XerC [Orientia tsutsugamushi
           str. Ikeda]
 gi|189181544|dbj|BAG41324.1| integrase/recombinase XerC [Orientia tsutsugamushi str. Ikeda]
          Length = 312

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 43/283 (15%), Positives = 94/283 (33%), Gaps = 30/283 (10%)

Query: 71  LKWLISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGD-FDYRKITTKHIRSGVESRKH 128
           L+ +I+E+     ++ + ++N+  S+ +   Q +    D  +  ++   H+ S       
Sbjct: 7   LEKIITEWLNYLKNYKNYSINTCSSYNNDLQQFLNFIVDYCNLSELKISHLCSVDIRLMR 66

Query: 129 TPSSAIQFLT-----------SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT-- 175
           +  S    L            S+R  +K+  +   +      +V  PK      +     
Sbjct: 67  SWLSQRYNLQYNSSSNSRALSSVRNFYKYLFKHHNLVNKIICAVRSPKLAKRLPKALDIQ 126

Query: 176 -----KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
                  ++    +    G++ +     L   GLR S++       L++    IK  K  
Sbjct: 127 DTVACTTEINNIANDKWIGARDKALLLLLYGQGLRISEALSVTKASLKSESLIIK-GKGN 185

Query: 231 TIITVELPD----GFMKLLAMTP---IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
            I  +   D         + + P         F+    +K+    F         +  + 
Sbjct: 186 KIRLIPWLDITKQLLSDYVNLVPYSLTDNSPLFVGKRGKKLQPAVFGRHLIKLRRQLNLP 245

Query: 284 --KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              +AH  R   A+   + GA    +    G +++   + YTK
Sbjct: 246 ESLTAHTFRHCFASHLLNNGADLRSIQELLGHQSLSSTQIYTK 288


>gi|148807459|gb|ABR13530.1| site-specific recombinase [Pseudomonas aeruginosa]
          Length = 373

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 54/324 (16%), Positives = 108/324 (33%), Gaps = 39/324 (12%)

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119
           Y+     + TTL+  +  Y +     +   +++ + ++    +IR  G +    ++   I
Sbjct: 52  YLRRSPSEKTTLEKALGRYLEEVT-PTKKASTQKAEQTKAAPLIRHLGKYSLAALSADVI 110

Query: 120 RSGVESRKH-------------TPS--SAIQF---LTSMRVLFKWAVRQEY---VAINPC 158
               + R               TP   SA      L  +  LF  A+ QE+   +  NP 
Sbjct: 111 AEYRDKRLKETVRTKYKEGSDVTPRTVSANTVRLELALLSNLFTVAI-QEWRIGLPQNPV 169

Query: 159 LSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQH 216
           L++ +P       R    ++ ++     +    P L       + +G+R S+        
Sbjct: 170 LNIRKPSPGEGRDRRLNPDEERKLFQAVNAYHNPMLGWIVRIAVETGMRSSEITSLRRHQ 229

Query: 217 LQNN--IFSIKTQKTGTIITVELPDGFMKLLA------MTPIGKETFFINNDKQ--KMNA 266
           +     +  +   K G   TV L     +         + PI     F     +  K   
Sbjct: 230 VDLKKRVVKLLDTKNGESRTVPLTQAAAQAFKDALENPIRPIDTNLIFFGEPGKDEKRRP 289

Query: 267 TQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTK 324
             FS  +     + G+ +   H +R  + +   ++G  T  ++ A  G K++   + YT 
Sbjct: 290 YVFSKVWNEMKKRLGMTDLRFHDLRHEAVSRLVESGQLTDQQVAAISGHKSMQMLKRYTH 349

Query: 325 GADRIRLGIKNSRRISSVVDSDDP 348
              R    +     I        P
Sbjct: 350 L--RAEDLVTALDNIDQSRQGSRP 371


>gi|237743641|ref|ZP_04574122.1| predicted protein [Fusobacterium sp. 7_1]
 gi|229432672|gb|EEO42884.1| predicted protein [Fusobacterium sp. 7_1]
          Length = 414

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 50/326 (15%), Positives = 108/326 (33%), Gaps = 56/326 (17%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQII--RKSGDFDYRKITTKHIRSGVESR-- 126
            +W ++ Y       SL++ ++  +++   ++          + ++T K I   +E    
Sbjct: 93  FEWALNIYLL--KNPSLSIVTKNGYKNEVKKMKNYAPFKLISFAELTKKDIEHYLEYLFI 150

Query: 127 --KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
             K  PS+  +    +  L+K A+++E V  N     E  K K    +  +KE  + F  
Sbjct: 151 IEKLAPSTVAKIRVVLGTLYKVAIQRELVEYNLIYKTEPIKVKKAKRKALSKEKAKIFLE 210

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----------------NNIFSIKTQK 228
              E S+ +L F  L++ GLR S+     + ++                  N   +  ++
Sbjct: 211 AL-ENSEYKLEFYLLIFLGLRKSELLGITIDNINFEEKSLYLEQSLIWDSENKIYVVNRE 269

Query: 229 TGTIIT------VELP-DGFMKLLAMTPIGKETFFINNDK----------QKMNATQFSI 271
             + +       + +  D   + +      K TFF N               +   +   
Sbjct: 270 MKSPLANRKFPLIPILTDFLAERINRIKEDK-TFFGNTYGIDKKLNFNAEGYLCIDREGK 328

Query: 272 WFKAKA---------TKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE- 320
             +             K G+ + S H +R   AT+    G    ++    G   +     
Sbjct: 329 ILRKFKLNYELDKILKKIGLEHLSVHELRHTCATLMYSEGVDLKKIQYWLGHSNISTTAN 388

Query: 321 TYTKGADRIRLGIKN--SRRISSVVD 344
            Y    +     +     + +   +D
Sbjct: 389 IYAHYDNSKNFEVIGKLEKALEKNID 414


>gi|228932649|ref|ZP_04095524.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|228827021|gb|EEM72780.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
          Length = 369

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 53/303 (17%), Positives = 99/303 (32%), Gaps = 48/303 (15%)

Query: 67  KPTTL----KWLISEYRKSAHWGS-----LAVNSRISFESYFD-QIIRKSGDFDYRKITT 116
           K  T     K L  EY  S  W       +  ++  ++    +  II   G+ +  KI  
Sbjct: 52  KDGTFSEPSKMLYKEYLNS--WLEDKRILIKESTFKTYSWLINKYIIPNLGNIELSKIRP 109

Query: 117 KHIRSG----VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
             I+      + +   +  +  +  + +    K A R   +  N    V+RPK     ++
Sbjct: 110 IDIQKLYNEIINNNLLSRENVQKIHSLINDSLKKAERWGLIKCNVASLVDRPKAYKSELK 169

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKT---- 226
            W   +++ F    +E S+  +AF   L +G+R  +      + +   NN  SIK     
Sbjct: 170 VWDIGEVKSFLKV-AESSRYYIAFLLALTTGMRQGEILALRWKDIDFNNNTLSIKQTLNH 228

Query: 227 --------QKTGT-IITVELP--------------DGFMKLLAMTPIGKETFFINNDKQK 263
                    KT +   ++ LP              D   ++  +     +     N    
Sbjct: 229 AGNKIIAGAKTKSGQRSIALPNETINFLVKHKETIDNEKRVAGILYTHHDLVVCTNIGTP 288

Query: 264 MNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ET 321
                    F +   K  + K   H +R   AT+    G     +    G   +    +T
Sbjct: 289 CLPRNLLRSFYSLIEKIDITKIRFHDLRHTHATLLLKEGVHPKVVAERLGHSNIRVTLDT 348

Query: 322 YTK 324
           Y+ 
Sbjct: 349 YSH 351


>gi|284928595|ref|YP_003422327.1| hypothetical protein Dshi_5002 [Dinoroseobacter shibae DFL 12]
 gi|251736500|gb|ACT10200.1| hypothtical protein [Dinoroseobacter shibae DFL 12]
          Length = 308

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 40/265 (15%), Positives = 82/265 (30%), Gaps = 24/265 (9%)

Query: 90  NSRISFESYFDQIIRKSG----DFDYRKITTKHIRSGVE---SRKHTPSSAIQFLTSMRV 142
             +     +   + R  G        R+IT   +R+ +     R     S  + L++++ 
Sbjct: 34  AYQRDVAGFLGFLARHDGGLASPARLRRITQSDMRAWMAAERRRGLGARSLARALSAVKS 93

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE-------DMQQFKSFWSEGSQPRLA 195
            F+W   ++       L+   PK + +  RP  ++        ++   +     ++    
Sbjct: 94  FFRWVGERDGFEPTAVLAARSPKYQRKLPRPLAEDAALEMIAQVELQAADSWIAARDVAV 153

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL----LAMTPI- 250
              L   GLR S++                  K      V +           L ++P  
Sbjct: 154 VTLLYGCGLRISEALGLTGAAAPLPEVLTIRGKGDKERIVPVLPAARTAVDTYLRLSPHP 213

Query: 251 --GKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHE 306
                  F      ++N    +   +    + G+    + H +R   AT    AG     
Sbjct: 214 LEKDGPLFRGKRGGQLNPRVIAKVMEQARMQLGLPSSATPHAMRHSFATHLLAAGGDLRA 273

Query: 307 LMATYGWKTVDQAETYTKGADRIRL 331
           +    G  ++   + YT   D  RL
Sbjct: 274 IQELLGHASLSTTQAYT-AVDATRL 297


>gi|148988039|ref|ZP_01819502.1| site-specific recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP6-BS73]
 gi|147926503|gb|EDK77576.1| site-specific recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP6-BS73]
          Length = 384

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 59/366 (16%), Positives = 113/366 (30%), Gaps = 57/366 (15%)

Query: 11  VTKERTRHGKIIYYF-------RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63
           + K +T+ G I+YY          G  +R              Y + L            
Sbjct: 3   IHKYKTKKG-ILYYVSFYIGLDAYGKKKRHLKRGFKTKKEAKLYEARLEAGVVAPTVNTD 61

Query: 64  PRKKPTTLKWL----ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119
                 T K L       Y  +    + +  ++  +  +   I    G     +I+    
Sbjct: 62  KPNPKVTYKELYQEWFKAYVGTVEETT-SSQTKNIYRIHILSI---FGGKFIDQISPLDC 117

Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK-RKTEGIRPWTKED 178
           ++ +  +  T  +  Q  +    +F +A+   Y+  NP  +V  PK +KT     W+ E+
Sbjct: 118 QNFITQKSQTFKNIKQIKSYTSKIFDFAINMNYIDRNPMKNVIMPKIKKTRSDNFWSLEE 177

Query: 179 MQQFKSFWS--EGSQPRLAFEFLLYSGLRCSDSCRAGVQH----------------LQNN 220
           +  F       E  +    F  L +SGLR  +                        +   
Sbjct: 178 LHHFLDIVKETEPFKHFALFRLLAFSGLRKGELYALKWDDINFDSNLLNIDKSLGRIDGK 237

Query: 221 IFSIKTQKTGTIITVELPDGFMKLLAMT-----------PIGK--------ETFFINNDK 261
                T+   ++ T+ L D  + ++              P+ K          +  +NDK
Sbjct: 238 AIEKSTKNESSVRTIYLDDETIDIVKQWRNFYLKEQSQFPLTKLNISNEYMFYYISSNDK 297

Query: 262 -QKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
            + ++A   +        K  +     HG R   AT+ ++ G          G  +    
Sbjct: 298 IEPLHADYINNVLNRIIKKHKLKPIIPHGFRHTHATLMSEIGIDPSNTSKRLGHASSQMT 357

Query: 320 -ETYTK 324
            + YT 
Sbjct: 358 LDVYTH 363


>gi|295099168|emb|CBK88257.1| Site-specific recombinase XerD [Eubacterium cylindroides T2-87]
          Length = 403

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 53/372 (14%), Positives = 99/372 (26%), Gaps = 71/372 (19%)

Query: 17  RHGKIIYYFRKGH--GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           R G   Y  R     G+R+ L            M A             P       KWL
Sbjct: 16  RRGIQYYRTRITDADGKRVDLYAETCEELQLKEMEARRQVEEAVFRRKHPTVAEYCEKWL 75

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           + +   SA    ++  +   +    +  I++  GD     +T   IR  +       +  
Sbjct: 76  LMQ---SAK---VSSGTLRGYTQTMNNYIVKPLGDMYLEDVTADDIRLAMIPLASKSAGL 129

Query: 134 IQFLTSMRVLFKW-AVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
              +  +     + A R + +  NPC  +  +  +  + I   T E ++        G  
Sbjct: 130 YSKVNMLLKCVFYSAERSQLLEYNPCEGLSAKGGKPGKKINALTDEQVKLLLDTV-RGLP 188

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHL-------------------QNNIFSIKTQKTGTI 232
           P       LYSGLR  +        +                      + S   +     
Sbjct: 189 PYTFIMIALYSGLRREEILGLQWDCVFLDVPTPYISVRRAWRSEHNRPVISTTLKTKAAR 248

Query: 233 ITVELPDGFMKLLA--MTPIGKETFFINNDKQKMNATQFSIWFK---------------- 274
             + +P      L         E    + +   ++++QF   +K                
Sbjct: 249 RDIPIPKCLTDCLREVKEKTESEYVVADRNGNPLSSSQFQRVWKYVTVRSTKPHNYYKYV 308

Query: 275 -AKATKAGV--------------------NKSAHGVRKFSATISADAGATAHELMATYGW 313
             +  K  V                    + + H +R    T    AG     +    G 
Sbjct: 309 NGQCVKCTVTPTPGSHQKNNPKLVYAIDFDVTPHQLRHTYITNLLYAGIDPKTVQYLAGH 368

Query: 314 KTVDQA-ETYTK 324
           +      + Y +
Sbjct: 369 ENSKTTMDIYAQ 380


>gi|325297680|ref|YP_004257597.1| integrase family protein [Bacteroides salanitronis DSM 18170]
 gi|324317233|gb|ADY35124.1| integrase family protein [Bacteroides salanitronis DSM 18170]
          Length = 368

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 43/242 (17%), Positives = 88/242 (36%), Gaps = 19/242 (7%)

Query: 101 QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
           ++  K  D+  +     H  + +       +SA  + ++ R L K A +++ +  N    
Sbjct: 134 ELCEKFKDYLLKCKQINHPNAYISR-----NSAAGYYSTFRALLKIAYKEKMLRENLNDF 188

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220
           +E+ + K       T +++++  +   +    + A  F   +GLR SD  +   +  +  
Sbjct: 189 LEKIEWKEVKKEYLTLDEVKKLAATPCKIPVLKQASLFACMTGLRISDILKLDWRDFEVG 248

Query: 221 -----IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKA 275
                   I T+KT T  T+ +    ++L      GK   F     + +  +      K 
Sbjct: 249 PDQGYYIRICTEKTETEATLPISQEALELCGEWGSGK--VF-----KGLTRSMTHHPLKQ 301

Query: 276 KATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
              +AG+ K  + H  R   A I    G   + +      K V   + Y    +  +   
Sbjct: 302 WIAEAGIRKHITFHCFRHSYAVIQISLGTDIYTVSKMLTHKNVTTTQIYADLVNSKKRET 361

Query: 334 KN 335
            N
Sbjct: 362 AN 363


>gi|319936510|ref|ZP_08010925.1| integrase [Coprobacillus sp. 29_1]
 gi|319808402|gb|EFW04957.1| integrase [Coprobacillus sp. 29_1]
          Length = 391

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 61/377 (16%), Positives = 110/377 (29%), Gaps = 59/377 (15%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
            ++ K     G   Y +          P P      P+            E       K 
Sbjct: 18  KYLYKYVDAFGNTKYVYAWRLTP--TDPTPKGKREKPSLRELEQQIRRDIEDGIDSTGKK 75

Query: 69  TTLKWLISEY-RKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRSGVESR 126
            T   L   Y +++A   ++  +++   E     +   K G      I     +      
Sbjct: 76  MT---LCQLYAKQNAQRANVKKSTQKQREQLMRLLKEDKLGARSIDTIKPSDAKEWALRM 132

Query: 127 KHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPC--LSVERPKRKTEGIRPWTKEDMQQ 181
           K      ++      S++  F  A++ + V  NP      E  +  T+     T+E  Q 
Sbjct: 133 KDKGFSYNTINNHKRSLKASFYIAIQDDCVRKNPFDFKLSEVIENDTKEKVALTEEQEQA 192

Query: 182 FKSFWSEGSQPRLAFE---FLLYSGLRCSDSCRAGVQHLQ----------------NNIF 222
             SF    +     ++    LL +GLR S+ C   V  +                    +
Sbjct: 193 LLSFIKTDNVYHKHYDDVLILLKTGLRISELCGLTVADIDFKNEVVIIDHQLLKSKEQGY 252

Query: 223 SIKTQKTGTIIT-VELPDG----FMKLLAMTPIG--------KETFFINNDKQKMNATQF 269
            I+T KT + I  V L       F +++   P              F+N+  +   A  +
Sbjct: 253 YIETPKTKSGIRQVPLSRETIQTFQRVMKKRPKAEPFVIDGRGNFLFVNHKGKPKVAIDY 312

Query: 270 SIWFKAKATKAG--------VNKSAHGVRKFSATISADAGATAHELMATYGWKTVD---- 317
           ++       K           + + H +R    T  A       +L    G   +     
Sbjct: 313 NMLVVRMVKKYNKYHKDNPLPHITPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISITMN 372

Query: 318 ---QAETYTKGADRIRL 331
               A   T  ++  RL
Sbjct: 373 WYAHASIDTAKSEVQRL 389


>gi|312878076|ref|ZP_07738012.1| integrase family protein [Caldicellulosiruptor lactoaceticus 6A]
 gi|311795155|gb|EFR11548.1| integrase family protein [Caldicellulosiruptor lactoaceticus 6A]
          Length = 278

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 45/263 (17%), Positives = 82/263 (31%), Gaps = 42/263 (15%)

Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE-GIR 172
           +T + + +     + + S+       +      A++   V  N   +   PK KT+  IR
Sbjct: 1   MTLQALYNSKYENRLSLSTIKHIHVILHSALDQALKNGLVVRNVSEATTLPKVKTKNEIR 60

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQ--- 227
             T ++ Q+F +   EG + R AF   L SG+R  +         +L+    +IK+    
Sbjct: 61  VLTLQEQQRFIAAL-EGERLRPAFLLALASGVRLGELLALKWDCVNLKEGTITIKSSLRR 119

Query: 228 -------------------KTGTII-TVELPD------------GFMKLLAMTPI--GKE 253
                              KT   I T+ +P                + L    +     
Sbjct: 120 IKTYDKNLPTKTMLAFQEPKTAAGIRTIPVPPVILEELKEHRKRQLEERLQAGSLYEDNN 179

Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGW 313
             F       +    F   F     KA ++ + H +R   AT   +A      +    G 
Sbjct: 180 LVFATELGTPIEPRNFLRVFYRIIEKANLDINFHALRHTYATRLLEANEHPKVVQELLGH 239

Query: 314 KTVDQA-ETYTKGADRIRLGIKN 335
             +      Y+     I+     
Sbjct: 240 NDISTTLNIYSHVIPEIKKAAAM 262


>gi|288801867|ref|ZP_06407309.1| integrase [Prevotella melaninogenica D18]
 gi|288335909|gb|EFC74342.1| integrase [Prevotella melaninogenica D18]
          Length = 409

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 38/210 (18%), Positives = 65/210 (30%), Gaps = 20/210 (9%)

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-----F 182
            T  +A   L ++    + A R+    +      +  K      +   KE + +     F
Sbjct: 183 STFYNAATHLKTV---CRLAYREGLADVLLFDKAKISKGDKRLPKALDKEALDKLKALNF 239

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVEL 237
           +    E    R  F F  Y+G    D       HL  +            KTG    V+L
Sbjct: 240 EDLEEEMETARDIFLFACYTGAAYCDLMELDKSHLVRDDEGSLWLKFNRHKTGVPCRVKL 299

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSAT 295
               ++L+           +      +    + I  KA   +AG+    + H  R   AT
Sbjct: 300 LPEAIRLMEKLHSDGRETLL----PCIKYKNYQICLKALRLRAGISFPFTTHTARHTFAT 355

Query: 296 IS-ADAGATAHELMATYGWKTVDQAETYTK 324
           +   + G     +    G   +   E Y K
Sbjct: 356 LITLEQGVPIETVSKMLGHSNISMTERYAK 385


>gi|239907848|ref|YP_002954589.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
 gi|239797714|dbj|BAH76703.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
          Length = 366

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 42/271 (15%), Positives = 89/271 (32%), Gaps = 24/271 (8%)

Query: 71  LKWLISEYRKSAHWGSLAV-NSRISFESYFDQIIRKSGDFDYRKIT-TKHIRSGVESRKH 128
            K L  +Y +          N++   +   +Q     GD    ++T    +   ++  ++
Sbjct: 82  FKDLADKYIEHLEVSGRTETNTKKLKKMIENQFNPLIGDKVVNEMTYVDDMVPFIKIFQN 141

Query: 129 TPS---------SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
           TP          +  ++   +  +F + V      +NP     + K K   I+  T ED+
Sbjct: 142 TPGKSGKPRSQLTVNRYGDYVNAIFNFGVAMGLTKVNPMRGRRKSKEKPREIQ-LTVEDI 200

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSD--SCRAGVQHLQNN--IFSIKTQKTGTIITV 235
           ++        S  R A E     G R  +        +H+     +  I   KT T   V
Sbjct: 201 KRIMECAE--SHIRWAMEVCFNLGTRPGESELLALKWEHIDFEKSVARIYASKTKTYRIV 258

Query: 236 ELPDGFMKLLA-MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292
            +    ++ +          + ++   +++   +    F+    +A +N     + +R  
Sbjct: 259 PISAKLLEKMRSRMAESTSGYVVDYRGERIGMIRKG--FRGACQRANINYPVRMYDLRHL 316

Query: 293 SATISADAGATAHELMATYGWKTVD-QAETY 322
            AT     GA    +    G   +      Y
Sbjct: 317 FATTMLSKGADLAAVSKLLGHSMISTTTSHY 347


>gi|89899991|ref|YP_522462.1| phage integrase [Rhodoferax ferrireducens T118]
 gi|89344728|gb|ABD68931.1| phage integrase [Rhodoferax ferrireducens T118]
          Length = 291

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 34/269 (12%), Positives = 77/269 (28%), Gaps = 21/269 (7%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK--ITTKHIRSGVESRKHTPS 131
           L     +      LA  ++ ++     ++    G           +  +  +     +P 
Sbjct: 11  LRQRMIEDMRLRKLAPKTQSAYVRAVRKLAGFIGRSPDTASAEDLRRFQLHMVDSGASPI 70

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           +    +  +   F   + +E V       ++  +         +KE++ +  +       
Sbjct: 71  TLNATIVGLNFFFSITLGREEV----MAKMQSVRVPHRLPVVLSKEEVARLLAAVGHIKH 126

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLAMT- 248
              A      +GLR  +     V  + +   +++    K        L    ++ L    
Sbjct: 127 Q-TALSLAYGTGLRVGEVVALKVSDIDSQRMTLRVEQGKGRKDRYAMLSPVLLERLRCWW 185

Query: 249 ---------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS 297
                      G   F   N  + +   Q +      A  A ++K  S H +R   AT  
Sbjct: 186 RVARAQGKMLDGGWLFPGLNPIESLGTRQLNRAIHEAALVARIDKRVSMHTLRHSFATHL 245

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGA 326
            +       +    G   +D    Y + A
Sbjct: 246 LEQKVDIRVIQVLLGHNRLDTTAQYVQVA 274


>gi|312952945|ref|ZP_07771801.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX0102]
 gi|310629086|gb|EFQ12369.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX0102]
          Length = 387

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 50/319 (15%), Positives = 96/319 (30%), Gaps = 48/319 (15%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDF 109
           L     + E     +    T   L   +  S H  ++   +    +++F +QI+   G  
Sbjct: 49  LARFQLEIESNGISQHSIKTFSELYDLWM-SQHVKNIRNTTEQRIKNHFTNQILPSFGKM 107

Query: 110 DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
               IT    +  +        S  +  +    +F + +    +  NP      PK   +
Sbjct: 108 KLEAITPATCQKILTEWSMKYHSYQKIKSYTSQVFNYGILIGVIKTNPMERTITPKSNHD 167

Query: 170 GIRP----WTKEDMQQFKSFWSEGSQPRLA--FEFLLYSGLRCSDSCRAGVQHLQ----- 218
                   +TKE+++QF     E    R    F    Y+G R  +      + +      
Sbjct: 168 SAEIEAEFYTKEELRQFFDCLQELKDDRALAFFRLAAYTGARKGEILGLTWKDIDFDKKT 227

Query: 219 -----------NNIFSIKTQKT-GTIITVELPDG----------------FMKLLAMTPI 250
                      +    I   KT  +  T+ + DG                  + + +  I
Sbjct: 228 VQFNKTLVELSDGSLCINPTKTESSKRTITIDDGTLTILKKWKRTVIKKNLSRGIRIDNI 287

Query: 251 GKETFFIN---NDKQKMNATQFSIWFKAKATKAGVNKSA---HGVRKFSATISADAGATA 304
                      N K+      +     +K  +   +      HG RK  AT+  +AGA  
Sbjct: 288 DDVPVISTIKANKKRDFLYKGYPNHVMSKVARKFPDMKIIKVHGFRKTHATLLFEAGAQV 347

Query: 305 HELMATYGWKTVDQA-ETY 322
            ++    G  +     + Y
Sbjct: 348 KDVQDRLGHSSSKTTMDIY 366


>gi|160884309|ref|ZP_02065312.1| hypothetical protein BACOVA_02287 [Bacteroides ovatus ATCC 8483]
 gi|156110048|gb|EDO11793.1| hypothetical protein BACOVA_02287 [Bacteroides ovatus ATCC 8483]
          Length = 160

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 34/152 (22%), Positives = 53/152 (34%), Gaps = 15/152 (9%)

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHL----QNNI-FSIKTQKTGTIITVELPDGFMKLLAM 247
           R A  F   +GLR SD  R   +++           I T+KT T   + L D  +  L  
Sbjct: 13  RSAALFSCLTGLRISDIIRLQWENIVKGADGGWCMHIVTKKTKTEAVLPLSDEALA-LCG 71

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAH 305
                + F      + +  T   ++ K     AG+ K  + HG R   AT+   AG   +
Sbjct: 72  ERTEGQVF------KGLTKTILPLYLKDWIKSAGITKHITFHGFRHTYATLQLAAGTDLY 125

Query: 306 ELMATYGWKTVDQAETYTKGA-DRIRLGIKNS 336
            +        V   + Y     D  R   +  
Sbjct: 126 TISKMLTHSNVGTTQVYADVVNDLKRKASEQI 157


>gi|257784003|ref|YP_003179220.1| integrase family protein [Atopobium parvulum DSM 20469]
 gi|257472510|gb|ACV50629.1| integrase family protein [Atopobium parvulum DSM 20469]
          Length = 328

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 37/281 (13%), Positives = 90/281 (32%), Gaps = 15/281 (5%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
           K ++  +  +      +  +   + S     +       +R++TT+ +RS +        
Sbjct: 51  KRMLDAFYAAKRLEGCSERTISYYASVLHHYMVNI-TTGFRQVTTEEVRSYLIEYGQRKG 109

Query: 132 ----SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
               +       +  LF W   ++Y+  +P   +++ +         T ++++  +   +
Sbjct: 110 VSKITVDNVRRVISSLFSWLEAEDYILKSPVRRIKKIRSPRNIKPVITDDELETMRDGCT 169

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDG----FM 242
              +     + L  SG+R  +  R   + +       +   K      V           
Sbjct: 170 C-VRDLALVDLLTSSGMRVGELVRLNREDIDFEGRQCVVRGKGDKERRVYFDARTKVHLH 228

Query: 243 KLLAMTPIGKETFFINNDKQKMNAT--QFSIWFKAKATKAGVNK-SAHGVRKFSATISAD 299
           + L          FI+ D  K         +  +      G+ +   H  R+  AT + D
Sbjct: 229 EYLNSRHDENPALFISLDGTKKRLEISGVELRLRMLGRSLGLPRVHPHKFRRTMATRAID 288

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
            G    ++    G   +D    Y    D+  +   + + I+
Sbjct: 289 KGMPIEQVQVLLGHSKIDTTLCYA-MVDQENVKQAHRKFIA 328


>gi|225572145|ref|ZP_03781009.1| hypothetical protein RUMHYD_00439 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040317|gb|EEG50563.1| hypothetical protein RUMHYD_00439 [Blautia hydrogenotrophica DSM
           10507]
          Length = 351

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 47/329 (14%), Positives = 107/329 (32%), Gaps = 42/329 (12%)

Query: 41  STFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD 100
             F   Y  AL  +T  +  I+         ++L+ E   +  + +         + +  
Sbjct: 27  PPFCRDYFRALEATTTTKTRISYAYDIRVFFQYLLEE---NPTFKN------RPMDQFTV 77

Query: 101 QIIRKSGDFDYRKITT--KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158
            I+ +    D  +     K  ++  ++  +      + ++S+R  + +  ++E +  NP 
Sbjct: 78  DILDQLQVLDIEEYQEYLKVYQNQNKTTTNGERGLKRKMSSLRSFYAYYYKREMIETNPT 137

Query: 159 LSVERPKRKTEGIRPWTKEDMQQFKSFWSEG----------------SQPRLAFEFLLYS 202
           L V+ PK   + I     +++     +                     +       LL +
Sbjct: 138 LLVDMPKLHQKAITRLDADEVALLLDYIEHAGDELTGQKKVYYEKTKERDLALVTLLLGT 197

Query: 203 GLRCSDSCRAGVQHLQ--NNIFSIKTQKT-------GTIITVELPDGFMKLLAMTPI--G 251
           G+R S+     V+ L   NN   +  +         G+ +   L         +TP+   
Sbjct: 198 GIRVSECVGLDVEDLDFKNNGIKVTRKGGGEMIVYFGSEVETALRRYLKARDNITPVVGH 257

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMA 309
           +   F +  ++++         K  A++    K  + H +R    T         + +  
Sbjct: 258 EHALFYSTQRKRLGVQAVENLVKKYASQITTTKKITPHKLRSTYGTALYQETGDIYLVAD 317

Query: 310 TYGWKTVDQA-ETYTKGAD-RIRLGIKNS 336
             G + V+   + Y    D R R      
Sbjct: 318 VLGHRDVNTTKKHYAAIDDSRRRKAASAV 346


>gi|118580552|ref|YP_901802.1| phage integrase family protein [Pelobacter propionicus DSM 2379]
 gi|118503262|gb|ABK99744.1| phage integrase family protein [Pelobacter propionicus DSM 2379]
          Length = 389

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 58/336 (17%), Positives = 113/336 (33%), Gaps = 27/336 (8%)

Query: 8   PPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTF-------IPAYM-----SALTGST 55
           P F  +   R  K  +  R+  G+ +R                + A M     + +  + 
Sbjct: 31  PRFAVRVSPRGRKTFFVMRRVKGKLVRATVGTFPEMNVDTARKMAAEMLVSMTAGVNPNI 90

Query: 56  PKREYINSPRKKPTTLKWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRKI 114
            ++      + K   L  +   Y  S    G +  +++ ++ S F ++  K  +    +I
Sbjct: 91  ERKRERAQQKDKSRLLSAVFDSYLASGGKDGDIKASTKAAYRSAFRRL-EKWQELKIDEI 149

Query: 115 TTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
            ++ +     S  +     +A   +  +R L K+A     V  NP   V   K +T    
Sbjct: 150 ESEMVEQLHVSIVKDCGGYAANHSIGLLRALMKFAK----VEGNPAADVAWAK-ETPRRE 204

Query: 173 PWTKEDMQQFKSFWS--EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQK 228
               E +  F       +G      F  LL++G+R S++       +   N    I+  K
Sbjct: 205 AMPPEAIPGFLKALDQLKGDNGSDLFRVLLFTGMRKSEAMGLRWIDIDLENKSLHIEETK 264

Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHG 288
           TG  + + +      +L        + ++     ++        F  +    GV    H 
Sbjct: 265 TGPPLNIPISGHLAAILEKRKERISSPWVFPSNSRVGHLTNDQQFCRELAALGVRVYPHL 324

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQA-ETYT 323
           +RK   TI+A +      +    G    D     YT
Sbjct: 325 LRKTFTTIAA-SLIPGAMVDCLTGHVPQDVTGRHYT 359


>gi|295090295|emb|CBK76402.1| Site-specific recombinase XerD [Clostridium cf. saccharolyticum
           K10]
          Length = 393

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 48/336 (14%), Positives = 105/336 (31%), Gaps = 43/336 (12%)

Query: 23  YYFRKGHG---------RRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
           YYFR   G         ++ R  +  +      Y   +  +    E +   +K+P + K 
Sbjct: 14  YYFRANLGYDSVTGKQIQKYRSGFSTKKEARTEYSRLVLAA---EEGLAMEKKQP-SFKQ 69

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HTPS 131
            I E     +   +  ++  +  +  ++  +        +I   H+++        ++P+
Sbjct: 70  YIEEIYLPWYKTQVKESTYKNRLNTIEKHFKFFYRKKVAEIEPIHVQAWQLKLAKEYSPN 129

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
                   + + F  A+     + NP   V   K K   I  WT ++ Q+  S   +G  
Sbjct: 130 YVRIIQGMLSLAFDRAIILGLASKNPSRMVGNIKSKKVKIDFWTLDEFQKVISLLYKGDY 189

Query: 192 ----PRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ--------------KTGT 231
                 + F  L  +GLR  ++       +   + I S+                 KT  
Sbjct: 190 YEHYLFICFWLLFTTGLRIGEAAALQWDDIDFESGIISVTKTLYYKSMTEYKFVEPKTSA 249

Query: 232 IITVELPD-----GFMKLLAMTPI--GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284
            +   + D        +   +         F ++ +    +        +  A  AGV++
Sbjct: 250 SVRTVVLDDDTIRELKEWKEVQKKVLKDCNFVLSYNGIPTSKHTLPRALEKLAGLAGVHR 309

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
              H +R     +    G     +    G + +   
Sbjct: 310 IKIHALRHSHVALLISMGVNPLIIKDRLGHEKIQTT 345


>gi|66395519|ref|YP_239890.1| ORF011 [Staphylococcus phage 42E]
 gi|62636012|gb|AAX91123.1| ORF011 [Staphylococcus phage 42E]
          Length = 345

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 50/324 (15%), Positives = 110/324 (33%), Gaps = 24/324 (7%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT-TLKWLISE 77
           GK   Y  K  G+R R        F     +   G     E  +        TL+     
Sbjct: 8   GKKWQYEFKHDGKRYRKKG-----FRTKREANSAGLDKLYELRSGFNIDNGITLEEYFKN 62

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRSGVE--SRKHTPSSAI 134
           + K+     +  N+   +++    I + K G  +  KI  +  +  +   S++H   +  
Sbjct: 63  WIKTYKEPVVKENTYRHYKNALQHIQQHKIGKMELSKINKQVYQKFINDYSKEHAKETIR 122

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSV-----ERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
           +   ++R     A+    +  NP   V     +  K + E     T+ ++ + +    + 
Sbjct: 123 KTNGAIRSALDDALYDGLIFKNPAHKVNYKAGKPTKSEQEKFISVTEYEILK-EHVKKKR 181

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTG-TIITVELPDGFMKLLA 246
           ++  LA   ++ +G R S +    ++H+    N   I  +KT  +   + +    MK + 
Sbjct: 182 TRSSLALFIMICTGCRVSGARNIKIEHINQVKNTIFIDERKTDTSPRHISIAKSDMKHIM 241

Query: 247 MT----PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG 301
                  I  + +        +     +   K+      +   ++H +R    +     G
Sbjct: 242 GVISSFAISYDGYIFKESGFIITLQAINNALKSACRVNNIPIITSHALRHTHCSYLLAKG 301

Query: 302 ATAHELMATYGWKTVD-QAETYTK 324
            + H +    G K +      Y+ 
Sbjct: 302 VSIHYISKRLGHKNIAITTSVYSH 325


>gi|25010286|ref|NP_734681.1| site-specific recombinase, phage integrase family [Streptococcus
           agalactiae NEM316]
 gi|76787040|ref|YP_328946.1| phage integrase family site specific recombinase [Streptococcus
           agalactiae A909]
 gi|76798149|ref|ZP_00780402.1| site-specific recombinase, phage integrase family [Streptococcus
           agalactiae 18RS21]
 gi|77405331|ref|ZP_00782426.1| site-specific recombinase, phage integrase family [Streptococcus
           agalactiae H36B]
 gi|23094638|emb|CAD45856.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76562097|gb|ABA44681.1| site-specific recombinase, phage integrase family [Streptococcus
           agalactiae A909]
 gi|76586508|gb|EAO63013.1| site-specific recombinase, phage integrase family [Streptococcus
           agalactiae 18RS21]
 gi|77176009|gb|EAO78783.1| site-specific recombinase, phage integrase family [Streptococcus
           agalactiae H36B]
          Length = 384

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 49/279 (17%), Positives = 91/279 (32%), Gaps = 44/279 (15%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWA 147
           A  +   F  +   I+   GD    KI+    ++ +  +     +  Q  +    +F +A
Sbjct: 90  ASRTLDMFRLH---ILPVMGDLPISKISPLDCQNFIIEKAKVFKNIKQIKSYTGKVFDFA 146

Query: 148 VRQEYVAINPCLSVERPKRKTEGIR-PWTKEDMQQFKS--FWSEGSQPRLAFEFLLYSGL 204
           ++ + +  NP   +  PKRK   I   WT +++Q+F +     E  +    F  L YSGL
Sbjct: 147 IKMKLLKHNPMTEIIMPKRKKTRIENYWTVQELQEFLAIVLQEEPYKHYALFRLLAYSGL 206

Query: 205 RCSDSCRAGVQHLQ---------------NNIFSIKTQKTGTII--------TVELPDGF 241
           R  +        +                +     K  K    +        T+ +   +
Sbjct: 207 RKGELYALKWADIDFQSETLSVNKSLGRLDGQAIEKGTKNDFSVRRIKLDSETISILQEW 266

Query: 242 MK---------LLAMTPIGKETFF--INNDKQ--KMNATQFSIWFKAKATKAGVNK-SAH 287
                       +A   I ++  F           ++A   +        K G+ K S H
Sbjct: 267 KANCQKEKAQLAVAPLSIEQDFIFTYCTRSGSIEPLHADYINNVLSRIIRKHGLRKISPH 326

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKG 325
           G R   AT+  + G          G  +     +TY+  
Sbjct: 327 GFRHTHATLMIEIGVDPVNTAKRLGHASSQMTLDTYSHS 365


>gi|219563220|ref|YP_002455812.1| integrase [Lactobacillus phage Lv-1]
 gi|215536987|gb|ACJ68924.1| integrase [Lactobacillus phage Lv-1]
          Length = 368

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 40/262 (15%), Positives = 87/262 (33%), Gaps = 24/262 (9%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTSMRVL 143
            +   +  +++    +I     +   ++IT    +S +     K++ S+  Q       +
Sbjct: 86  RVRPATLTAYKVALKRIESNFPNIPIKQITRSMFQSLLNQLSIKYSKSTVNQTAVVFSQI 145

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRP--WTKEDMQQFKSFWSEGS-QPRLA---FE 197
            K A+    V  +    V+ P++  +  +    +  D++   S   +     R+A     
Sbjct: 146 MKLALADGLVVRDVTSFVQIPEKAQDKRKIDYLSLADVKTLVSHIKDNLNTTRVAPYFIL 205

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ----------KTGTII-TVELPDGFMKLLA 246
             + +G R S+        L     +I  Q          KT + + TV +      LL 
Sbjct: 206 TAIETGARLSELAALTWDDLTPTSITITKQRNRDGIVSKPKTESSVRTVSITKDLYNLLQ 265

Query: 247 MTPIGKETFFINN-DKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGA 302
              + K+       +    + +  +   K    + G+ +     H +R     +  +AG 
Sbjct: 266 DLKVNKKKLIFQQPNGIVPDPSSLNFALKRLMKECGIKRHGFHFHSLRHTHVALLLNAGV 325

Query: 303 TAHELMATYGWKTVD-QAETYT 323
               +    G K V    E Y 
Sbjct: 326 DILTISQRLGHKNVSTTTEIYA 347


>gi|255527476|ref|ZP_05394346.1| integrase family protein [Clostridium carboxidivorans P7]
 gi|296187574|ref|ZP_06855969.1| phage integrase [Clostridium carboxidivorans P7]
 gi|308390320|ref|YP_003933773.1| putative integrase/recombinase [Clostridium carboxidivorans P7]
 gi|255508819|gb|EET85189.1| integrase family protein [Clostridium carboxidivorans P7]
 gi|296048096|gb|EFG87535.1| phage integrase [Clostridium carboxidivorans P7]
 gi|308066827|gb|ADO12131.1| putative integrase/recombinase [Clostridium carboxidivorans P7]
          Length = 295

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 42/250 (16%), Positives = 84/250 (33%), Gaps = 28/250 (11%)

Query: 91  SRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESRKHTPSSAIQFLTSMRVLFK 145
           +   + +   Q IR                    +  +  R   P S  + LTS+    K
Sbjct: 45  TIKGYFNDLIQFIRYLEIKGVDLFNIDSKEIELFKGKMLRRGLKPKSINRKLTSINQFLK 104

Query: 146 WAVRQEYVAINPCLSVERPKRKTEGI--RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203
                   +I+  +   + K +++      +T+E++++     S   + +     L  +G
Sbjct: 105 --------SIDSQVKFRKIKEQSQNFLNDVFTREEIERLIKCCS-NIRDKAIISTLWKTG 155

Query: 204 LRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL------AMTPIGKETFFI 257
           +R S+  +  V+ +      I   K G    + + +   KLL       ++  G E F  
Sbjct: 156 IRVSELLQLKVRDVGKESIDI-EGKGGKHRDILISNELNKLLKEYLKVRISVPGNELF-- 212

Query: 258 NNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATISADAGATAHELMATYGWK 314
              +  +     +      A  A + K     H  R       AD G +   +    G K
Sbjct: 213 TGKRGALKRGAINKIILKYAKLAKIRKEKAHPHSFRHAFCKALADNGVSIDIIADLAGHK 272

Query: 315 TVDQAETYTK 324
           ++D    YT+
Sbjct: 273 SLDTTRIYTR 282


>gi|257125187|ref|YP_003163301.1| integrase family protein [Leptotrichia buccalis C-1013-b]
 gi|257049126|gb|ACV38310.1| integrase family protein [Leptotrichia buccalis C-1013-b]
          Length = 354

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 39/281 (13%), Positives = 106/281 (37%), Gaps = 20/281 (7%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
            K L   ++ S     +A N+  S+ + F +  ++  +  ++ I+T  +++ +     + 
Sbjct: 69  FKDLFELFKNSKK-DIVAKNTLNSYINSFKR-CKELHNLVFKDISTPVLQNLINDLNCSI 126

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK-RKTEGIRPWTKEDMQQFKSFWSEG 189
           S+       +++ + +A   + +  N    +  PK  +T+  +P+  +++++        
Sbjct: 127 STKSITKGFLKIFWDYAREIDILEKNRAEFINLPKETETKEKKPFNYDEIEKLWENTDII 186

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ---KTGTIITVELPDGFMKLLA 246
                    ++Y+G+R  ++     +++      I      + G   ++ +    ++++ 
Sbjct: 187 WVKY--ILIMIYTGMRIEETVELKKENVDLQQEFIHGGNKTRKGKNRSIPIHKDIVEIIK 244

Query: 247 MTPIGKET-FFINNDK----------QKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSA 294
                  T + I NDK          + +    F   F        +NK   H  RK  A
Sbjct: 245 ELYENSPTDYLIYNDKWIFSKKKNENKPLRKNYFREKFYKTLETLKINKHKPHDCRKTLA 304

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335
           T+ ++       +    G + +   + Y    D+ +L +  
Sbjct: 305 TLMSNQKINNIVITDIMGHENIATTKQYYIQTDKQKLKLSM 345


>gi|307591331|ref|YP_003900130.1| integrase family protein [Cyanothece sp. PCC 7822]
 gi|306986185|gb|ADN18064.1| integrase family protein [Cyanothece sp. PCC 7822]
          Length = 318

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 51/299 (17%), Positives = 109/299 (36%), Gaps = 38/299 (12%)

Query: 81  SAHWGSLAVNSRISFESYFDQIIRKSGD-------FDYRKITTKHIRSGVE--SRKHTPS 131
           S + G+L  NS      + D++ +   D        ++ ++  +H  S      +K++P 
Sbjct: 26  SVYLGTLRPNSVPIVRRHLDELAQILTDNQCDAMTLNWGQLRYQHTASLRAVLIQKYSPG 85

Query: 132 SAIQFLTSMRVLFKWAVRQEYVA-INPCLSVE----RPKRKTEGIRPWTKEDMQQFKSFW 186
           +    L ++R + + A + + +   +   ++E    R  + +   R  +  ++Q   +  
Sbjct: 86  TVNHKLCALRRVLREAKKLKLITLEDYSDAIEIDSVRNHQPSLKGRALSSLEIQVLFTHL 145

Query: 187 SEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPD 239
            E S     +       LL SGLR ++     +           ++  K G   TV LPD
Sbjct: 146 LELSTISSFRDAALLAVLLGSGLRRAEVVSLDLADFNHSTGGIEVREGKGGKNRTVYLPD 205

Query: 240 GFMKLL-----AMTPIGKETFFINNDK-----QKMNATQFSIWFKAKATKAGVNK-SAHG 288
               L+              F+  N       ++M+        + +A+ AG+ + S H 
Sbjct: 206 WGTSLVVQWLNLRGFRPGPLFYAVNKGQRIVKRRMSGQAVLYILQKRASDAGIEQVSPHD 265

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
           +R+   +   DAG     +    G         Y +       G +  RR ++ +++  
Sbjct: 266 LRRTFISGLLDAGIDLVTVQKLAGHSDPATTARYDRR------GEEAKRRAANTINAPF 318


>gi|293372242|ref|ZP_06618627.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|292632684|gb|EFF51277.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
          Length = 436

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 52/299 (17%), Positives = 105/299 (35%), Gaps = 37/299 (12%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISF---ESYFDQIIR---KSGDFDYRKITTKHIRS-- 121
           T+  L   Y +     +L  ++ + +   + +    IR      D+D   I    +    
Sbjct: 126 TISTLFD-YHEIMEKKNLRASTFVGYHVTKKHLLNFIRIKYHVSDYDLTAIDKAFVYEFY 184

Query: 122 ----GVESRKHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE-GIRP 173
               G +    T  +     + +   + +   A++ E+++ NP   +   K K E G   
Sbjct: 185 AYLQGYKREGETVCAVNGALKHIQRFKKVMNVALQNEWISRNPVCLLNAKKTKVERGF-- 242

Query: 174 WTKEDMQQFKSF-WSEG-SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKT 226
            ++++++  +        S  R  F F +Y+GL   D      +++          +   
Sbjct: 243 LSEKELKSIEEVPLPVNLSIVRDVFVFAVYTGLSFVDISNLTNENINVGIDKSLWLNYYR 302

Query: 227 QKTGTIITVELPDGFMKLLA---MTPIGKETFFINNDKQKMNATQFSIWF-KAKATKAGV 282
           QKT     + L    + +L        GK T  +      +   Q +  + K  A +AGV
Sbjct: 303 QKTDIHAMLPLLQPAVCILKRYEAYHKGKRTNHVF----PVPPNQVANRYLKKVAKEAGV 358

Query: 283 NK--SAHGVRKFSAT-ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338
            K  + H  R   AT I+   G     +    G  ++   + Y K  D   +    + +
Sbjct: 359 EKNITFHMARHTFATTITLSHGIPIETVSKMLGHTSIKTTQIYAKILDTKVMDDMAALK 417


>gi|237719265|ref|ZP_04549746.1| integrase [Bacteroides sp. 2_2_4]
 gi|229451644|gb|EEO57435.1| integrase [Bacteroides sp. 2_2_4]
          Length = 420

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 52/299 (17%), Positives = 105/299 (35%), Gaps = 37/299 (12%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISF---ESYFDQIIR---KSGDFDYRKITTKHIRS-- 121
           T+  L   Y +     +L  ++ + +   + +    IR      D+D   I    +    
Sbjct: 110 TISTLFD-YHEIMEKKNLRASTFVGYHVTKKHLLNFIRIKYHVSDYDLTAIDKAFVYEFY 168

Query: 122 ----GVESRKHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE-GIRP 173
               G +    T  +     + +   + +   A++ E+++ NP   +   K K E G   
Sbjct: 169 AYLQGYKREGETVCAVNGALKHIQRFKKVMNVALQNEWISRNPVCLLNAKKTKVERGF-- 226

Query: 174 WTKEDMQQFKSF-WSEG-SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKT 226
            ++++++  +        S  R  F F +Y+GL   D      +++          +   
Sbjct: 227 LSEKELKSIEEVPLPVNLSIVRDVFVFAVYTGLSFVDISNLTNENINVGIDKSLWLNYYR 286

Query: 227 QKTGTIITVELPDGFMKLLA---MTPIGKETFFINNDKQKMNATQFSIWF-KAKATKAGV 282
           QKT     + L    + +L        GK T  +      +   Q +  + K  A +AGV
Sbjct: 287 QKTDIHAMLPLLQPAVCILKRYEAYHKGKRTNHVF----PVPPNQVANRYLKKVAKEAGV 342

Query: 283 NK--SAHGVRKFSAT-ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338
            K  + H  R   AT I+   G     +    G  ++   + Y K  D   +    + +
Sbjct: 343 EKNITFHMARHTFATTITLSHGIPIETVSKMLGHTSIKTTQIYAKILDTKVMDDMAALK 401


>gi|28558853|ref|NP_788113.1| putative integrase/recombinase [Ruegeria sp. PR1b]
 gi|22726404|gb|AAN05199.1| RC126 [Ruegeria sp. PR1b]
          Length = 313

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 38/277 (13%), Positives = 86/277 (31%), Gaps = 35/277 (12%)

Query: 86  SLAVNSRISFESYFDQIIR-----KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSM 140
            L+ +S  ++        +     K  D           +   E +  +P++  + L ++
Sbjct: 18  GLSEHSLRAYRQDLAAFAKFKQKAKLNDPPLAADIIDFQKDLREEQGVSPATIRRRLVTL 77

Query: 141 RVLFKWAVRQEYVAINPCLSV-------ERPKRKTE----GIRPWTKEDMQQFK------ 183
           R  + W    +    +P   +       +R  R  +    G    + + + Q        
Sbjct: 78  RSYYGWLAENDTSCPSPFEGLRLDMRVPKRLPRPVDRPTLGAVFRSAQHIVQLDPSDELS 137

Query: 184 --SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-ITVELPDG 240
                       L    L+ +GLR  +     V  +      I+ +  G    TV + + 
Sbjct: 138 VPKEIPAAQITGLIARLLIVTGLRIGELTSLRVCDVSGAATQIRVRGKGDRERTVYVAND 197

Query: 241 FMKLL-------AMTPIGKETFFINND-KQKMNATQFSIWFKAKATKAGV--NKSAHGVR 290
            ++              G + +   N    ++    F    +  +    +  + + H  R
Sbjct: 198 RLQTDFKRFWEDRCDAAGSQAWLFTNSMGDRLTPQAFRKRLRTLSKSLRIEPHLTPHRFR 257

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
             +AT+  + G     +    G  ++   E YTK +D
Sbjct: 258 HSAATLLIEEGVDIRLVQRLLGHASIATTEIYTKVSD 294


>gi|218704611|ref|YP_002412130.1| phage integrase [Escherichia coli UMN026]
 gi|293404493|ref|ZP_06648487.1| integrase [Escherichia coli FVEC1412]
 gi|298380268|ref|ZP_06989873.1| prophage lambda integrase [Escherichia coli FVEC1302]
 gi|300900694|ref|ZP_07118845.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 198-1]
 gi|218431708|emb|CAR12590.1| phage integrase [Escherichia coli UMN026]
 gi|291429079|gb|EFF02104.1| integrase [Escherichia coli FVEC1412]
 gi|298279966|gb|EFI21474.1| prophage lambda integrase [Escherichia coli FVEC1302]
 gi|300355816|gb|EFJ71686.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 198-1]
          Length = 380

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 59/358 (16%), Positives = 111/358 (31%), Gaps = 50/358 (13%)

Query: 9   PFVTKERT-RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTG----------STPK 57
           P +  +   R GK+ + ++     R       E+        A T           S  +
Sbjct: 13  PNLYCKLDKRTGKVYWQYKHPLSGRFHSLGTDENEAKQVATEANTIIAEQRTRQILSVNE 72

Query: 58  REYINSPRKKPTTLKWLISEYRKSAH----WGSLAVNSRISFESYFDQIIRKSGDFDYRK 113
           R      R+   T+   + +Y            L  NS               G    + 
Sbjct: 73  RLERMKGRRSEITVTEWLDKYISIQEDRLQHNELRPNSYRQKGKPIRLFREHCGMQHLKD 132

Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMRVL----FKWAVRQEYVA--INPCLSVERPKRK 167
           IT   I   +++ K       +    +R++    FK A    +V    NP  + ++P+ +
Sbjct: 133 ITALDIAEIIDAVKAEGH--NRMAQVVRMVLIDVFKEAQHAGHVPPGFNPAQATKQPRNR 190

Query: 168 TEGIRPWTKEDMQQ-FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226
               R  +  + Q  F+S        +      L +G R  D C      + +++  I  
Sbjct: 191 VNRQR-LSLPEWQAIFESVSRRQPYLKCGMLLALVTGQRLGDICNLKFSDIWDDMLHITQ 249

Query: 227 QKTGTIITVELP---DGFMKLLAMTPIGKETFFIN-------------NDKQKMNATQFS 270
           +KTG+ + + L    D     L           ++             N   +++A   +
Sbjct: 250 EKTGSKLAIPLNLKCDALNITLREVISQCRDAVVSKYLVHYRHTTSQANRGDQVSANTLT 309

Query: 271 IWFKAKATKAGVNK------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
             FK    K G+        + H  R  S  +  + G    +L    G K+    + Y
Sbjct: 310 TAFKKAREKCGIKWEQGTAPTFHEQRSLSERLYREQGLDTQKL---LGHKSRKMTDRY 364


>gi|23502879|ref|NP_699006.1| site-specific tyrosine recombinase XerD [Brucella suis 1330]
 gi|161619947|ref|YP_001593834.1| site-specific tyrosine recombinase XerD [Brucella canis ATCC 23365]
 gi|254705035|ref|ZP_05166863.1| site-specific tyrosine recombinase XerD [Brucella suis bv. 3 str.
           686]
 gi|23348908|gb|AAN30921.1| integrase/recombinase XerD [Brucella suis 1330]
 gi|161336758|gb|ABX63063.1| tyrosine recombinase XerD [Brucella canis ATCC 23365]
          Length = 307

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 43/272 (15%), Positives = 93/272 (34%), Gaps = 32/272 (11%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHT---PSSAIQFLTS 139
              A N+  S+    +    +      +  +  T HIR  +++       P+S  + L++
Sbjct: 18  RGAAQNTLESYRRDLEAAAEELAAKGVNLAEAETGHIRMTLDTMAAQGFAPTSQARRLSA 77

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS------------ 187
           +R  F++   + +   +P   ++ PK++    +  + E++ +     +            
Sbjct: 78  LRQFFRFLYSEGFRQDDPTGILDAPKKQKPLPKIMSVENVGRLLDRAALEANEAAEPGER 137

Query: 188 -EGSQPRLAFEFLLYSGLRCSDSCRAGVQ-HLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
            +  +     E L  +GLR S+     V     ++ F +   K      V L       L
Sbjct: 138 IKALRLHALLETLYATGLRVSELVGLPVTVARTDHRFLLVRGKGSKDRMVPLSRKARDAL 197

Query: 246 AM-------TPIGKETFFIN---NDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKF 292
                     P   +  ++    ++   +    F+   K  A +AG+     S H +R  
Sbjct: 198 QKFLTLRDSLPGSDDNPWLFPAFSESGHLARQVFARELKGLAARAGLAASSVSPHVLRHA 257

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324
            A+     GA    +    G   +   + YT 
Sbjct: 258 FASHLLQNGADLRTVQQLLGHADISTTQIYTH 289


>gi|148261334|ref|YP_001235461.1| phage integrase family protein [Acidiphilium cryptum JF-5]
 gi|326403318|ref|YP_004283399.1| putative transposase for insertion sequence element [Acidiphilium
           multivorum AIU301]
 gi|326404178|ref|YP_004284260.1| putative transposase for insertion sequence element [Acidiphilium
           multivorum AIU301]
 gi|146403015|gb|ABQ31542.1| phage integrase family protein [Acidiphilium cryptum JF-5]
 gi|325050179|dbj|BAJ80517.1| putative transposase for insertion sequence element [Acidiphilium
           multivorum AIU301]
 gi|325051040|dbj|BAJ81378.1| putative transposase for insertion sequence element [Acidiphilium
           multivorum AIU301]
          Length = 301

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 97/302 (32%), Gaps = 26/302 (8%)

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESY---FDQIIRKSGDFDYRKITTK 117
             SP ++P +   L     +      L   ++  +  +   F   +R+  D    +   +
Sbjct: 2   PVSPIERPVS--ALRQRMLEDMAMRGLRSATQRDYIRFVQSFAAFLRRPPDTATAE-DIR 58

Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
             +         P +    ++++R  F   + +     +    +   +   +     + +
Sbjct: 59  RFQVHQHESGVQPPTINCSVSALRFFFTVTLDR----PDLSRRLVLARSPRKLPDVLSVD 114

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITV 235
           ++ +       G + +        +GLR S+     V  + +    I+    K       
Sbjct: 115 EVGRLLEAAP-GIKYKAILGTAYGAGLRVSEVASLKVDDIDSTRMLIRVEQGKGRKDRNA 173

Query: 236 ELPDGFMKLLAM--TPIGKETFFI--------NNDKQKMNATQFSIWFKAKATKAGVNK- 284
            L    + LL +  T   +    +         +    ++  Q +      A  AG+ K 
Sbjct: 174 MLSPQLLALLRLWWTEGKRRGVMLPHGWLFPGRSAADPVSTRQINRAVHEAAEAAGIRKR 233

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR-IRLGIKNSRRISSV 342
            S H +R   AT   +       +    G   +D    Y + A + IR       R++S+
Sbjct: 234 VSPHTLRHSFATHLLEQDVDIRVIQVLLGHSKLDTTALYARVATKTIRSVTSPLERLASL 293

Query: 343 VD 344
           ++
Sbjct: 294 ME 295


>gi|325661577|ref|ZP_08150201.1| hypothetical protein HMPREF0490_00935 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472104|gb|EGC75318.1| hypothetical protein HMPREF0490_00935 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 354

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 55/345 (15%), Positives = 112/345 (32%), Gaps = 52/345 (15%)

Query: 32  RIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS---EYR--KSAHWG- 85
           R+R        F   Y  A+  +T  +  I+      T   +L+     YR   +  +  
Sbjct: 19  RLREILTTLPAFAKDYFRAMEPTTSAKTRISYAYDIRTFFYFLVECNPLYRDRSTTQFTL 78

Query: 86  -SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLF 144
             L   S +  E Y + + +     + ++I   +   G+  +          ++++R  +
Sbjct: 79  EDLDQLSSVDIEEYLEYL-KVYESSENKQI--INSEQGLARK----------MSALRSFY 125

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-GS------------- 190
            +  +++ +  NP L V+ PK   + I     +++     +    GS             
Sbjct: 126 GYFFKRQAIEKNPTLLVDMPKLHEKAIIRLDTDEVAILLDYIETCGSQLTGQKKVYYEKT 185

Query: 191 --QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLA- 246
             +       LL +G+R S+     +  +   N     T+K G  + V       K L  
Sbjct: 186 KYRDLAIITLLLGTGIRVSECVGLDINDVDFKNNGVKVTRKGGNEMVVYFGREVEKALRD 245

Query: 247 ----------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSA 294
                       P  +   F++  +++M         K  A +   NK  + H +R    
Sbjct: 246 YLELTRKNITPLPDHENALFLSTQRKRMGVQAVENMVKKYAKQVTPNKKITPHKLRSTYG 305

Query: 295 TISADAGATAHELMATYGWKTVDQA-ETYTK-GADRIRLGIKNSR 337
           T         + +    G K V+   + Y      R R      +
Sbjct: 306 TSLYKETGDIYLVADVLGHKDVNTTKKHYAAIDESRRRQAASAVK 350


>gi|261248380|emb|CBG26217.1| bacteriophage integrase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
          Length = 340

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 50/282 (17%), Positives = 82/282 (29%), Gaps = 34/282 (12%)

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
           ++   +LK LI  +  SAH  +L    +     +        G+   R    +      E
Sbjct: 51  KEDRRSLKELIDSWY-SAHGITLKDGEKRKLAMH--HAFDCMGEPLARDFDAQMFSRYRE 107

Query: 125 SR------------KHTPSSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGI 171
            R            + +P +    L   R +F    R   +   NP  ++ RP R  E  
Sbjct: 108 KRLKGDYARSNRVKEVSPRTLNLELAYFRAVFNELNRLGEWKGENPLKNM-RPFRTEEME 166

Query: 172 RPW-TKEDMQQFKSFWSEGSQPRLA--FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
             W TKE +            P L    +  L +G R S++       L     +    K
Sbjct: 167 MAWLTKEQIAALLDECKRHEHPDLVSVVKICLATGARWSEAEGLKKSQLSKYKITYNYTK 226

Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA-- 286
                TV +     + L        + F N              F++   +  +   A  
Sbjct: 227 GKKNRTVPISKELYEELPAKNKEHGSLFQNCYG----------AFRSALQRTNIELPAGQ 276

Query: 287 --HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
             H +R   A+     G     L    G   +     Y   A
Sbjct: 277 LTHVLRHTFASHFMMNGGNILVLQRVLGHTDIKMTMRYAHFA 318


>gi|290957659|ref|YP_003488841.1| integrase [Streptomyces scabiei 87.22]
 gi|260647185|emb|CBG70288.1| putative integrase [Streptomyces scabiei 87.22]
          Length = 407

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 56/371 (15%), Positives = 114/371 (30%), Gaps = 64/371 (17%)

Query: 9   PFVTKERTRHG-KIIYYFRKGHGRRIRLPYPH-----ESTFIPAYMSALTGSTPKREYIN 62
            +   E+TR G      +R+  GR  R                A+ S +        Y++
Sbjct: 15  KYYPCEKTRCGHNWTVRYREPGGRTARQREKTFAKKTGPDGADAFASKVEHDKGMGVYLD 74

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFES-YFDQIIRKSGDFDYRKITTKHIRS 121
            P++   TL+    E+        LA  +R ++E    + ++   G      +  K    
Sbjct: 75  -PKRGDITLRAWSKEWLG---LQILAEGTRRNYEGFTRNHVVPHLGRKTLAGLVKKDFEK 130

Query: 122 GVESRKHT-----PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT---EGIRP 173
            +            S+    +  +  + + AV ++ +A NP   V+ P+  +   +    
Sbjct: 131 FIADLHRNGEGMAASTINDRMKFVAAMMQAAVTEKRIAENPAAGVKVPRTSSFAVDEDEI 190

Query: 174 WTKEDMQQFKSFWS----------EGSQPRLAFEFLLYSGLRCSDSCRAGVQ-------- 215
            T E++     + S            +  R++      +  R +D  R   Q        
Sbjct: 191 PTLEEVDLVAKYISPQYRLTIYLQAAAGLRISETLAFATECRRTDFIRVRWQVSSKANRG 250

Query: 216 HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP---IGKETFFINNDKQ---------- 262
             +     +K +  G    +       + +             F +   +          
Sbjct: 251 DCRTRFVPLKHRAEGEYRDIPTAPFLEEEIVAHAERWDAVPVVFTDKGGRDKELEVFFAP 310

Query: 263 -------KMNATQFSIWFKAKATKAGV-------NKSAHGVRKFSATISADAGATAHELM 308
                     AT ++  FK     AG+         + HG+R F A+ +   G   HE+ 
Sbjct: 311 RERGKGTMPTATTYAYHFKKALKAAGLVRADGKPKYTPHGLRHFFASTALANGIPIHEVS 370

Query: 309 ATYGWKTVDQA 319
              G K++   
Sbjct: 371 RWLGHKSIKTT 381


>gi|257068193|ref|YP_003154448.1| site-specific recombinase XerD [Brachybacterium faecium DSM 4810]
 gi|256559011|gb|ACU84858.1| site-specific recombinase XerD [Brachybacterium faecium DSM 4810]
          Length = 332

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 41/305 (13%), Positives = 89/305 (29%), Gaps = 53/305 (17%)

Query: 85  GSLAVNSRISFESY---FDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS-- 139
              + ++  ++          +R        ++    +RS + +R  T +SA     S  
Sbjct: 24  RGRSEHTVRAYRREAAGLLAHLRTVERITLPELDVTALRSWLSARAETGASASTLARSAA 83

Query: 140 -MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK------SFWSEGSQP 192
            +R    W      +  +    +  P+R        T +   +        +     + P
Sbjct: 84  SVRTFTTWLASTGRIPHDVGGRLRAPRRGRHLPTVLTGDQAGELLDGLDGSARDDSAAPP 143

Query: 193 R----------------------LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
           R                         E L  SGLR S+        +     +++ +  G
Sbjct: 144 REIAAAPRAEQDPRDRAVLLRDAAVLELLYSSGLRVSELVALDRSRIDRQHGTVRVRGKG 203

Query: 231 TI---ITVELP-------------DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274
                + V LP                +          +  F+     ++          
Sbjct: 204 DRERIVPVGLPALEALQRWESEGRPVLLAAATPGTPPGDALFLGVRGGRLGDRAVRTLVD 263

Query: 275 AKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRL 331
               +AG+  + + H +R  +AT   + GA    +    G  ++   + YT   A+R+R 
Sbjct: 264 RHVAEAGISRHVTPHTLRHSAATHLVEGGADLRSVQDFLGHSSLATTQIYTHVSAERLRR 323

Query: 332 GIKNS 336
            +  +
Sbjct: 324 TVDQA 328


>gi|218262944|ref|ZP_03477242.1| hypothetical protein PRABACTJOHN_02922 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223043|gb|EEC95693.1| hypothetical protein PRABACTJOHN_02922 [Parabacteroides johnsonii
           DSM 18315]
          Length = 392

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 37/260 (14%), Positives = 86/260 (33%), Gaps = 26/260 (10%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVESRKHTPSSAIQFLTSMR 141
            +L +++  +  S    + +      +  +T          +  +K+  ++  + +  ++
Sbjct: 121 SNLRLSTLKNHLSTLQVLCQYQPQVSFDDLTFNFLCDFEHFLLEQKYHRNTIAKHMKHLK 180

Query: 142 VLFKWAVRQEY--VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL----A 195
                A+ ++   +   P    +    +++     T E++ + +    +  +        
Sbjct: 181 RYVNLAINKDLFELQKYPFRKYKIKYMESKRGH-LTPEELGRLEKVAPKLQRTLRRTLDM 239

Query: 196 FEFLLYSGLRCSDSCRAGVQH---LQNN-IFSIKTQKTGTIITVEL-----PDGFMKLLA 246
           F F  Y+GLR SD       +   + +       + KT   + + L              
Sbjct: 240 FLFSCYTGLRFSDIVNIRPDNFHLIDDKLWLVYSSVKTDVNVRLPLFLLFDGKALAVYER 299

Query: 247 MTPIGKETFFINNDKQKMNATQ-FSIWFKAKATKAGVNK--SAHGVRKFSATISADAGAT 303
                  T F       ++A    +   K     A ++K  S H  R  +AT+    GA 
Sbjct: 300 YRKRYSRTLF----GVSVSANSNVNKQLKRICRLAEIDKRLSFHMARHTNATLLLYNGAN 355

Query: 304 AHELMATYGWKTVDQAETYT 323
              +    G K+V   E Y+
Sbjct: 356 ITTVQKLLGHKSVRTTEIYS 375


>gi|254441509|ref|ZP_05055002.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
 gi|198251587|gb|EDY75902.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
          Length = 366

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 39/258 (15%), Positives = 78/258 (30%), Gaps = 15/258 (5%)

Query: 82  AHWGS--LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
             WG+  +   ++     + D +    G     K    +    ++  K TP  A +    
Sbjct: 77  PAWGNKLVTEITKSDVARFLDFVAE--GRPRPSKAKPNNRARKLQGHKPTPIRANRMGEV 134

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR--LAFE 197
           +R +F  A+  E+ A NP     R   +    R    E++ +           R      
Sbjct: 135 LRKMFTLAMEWEWRADNPVQGFHRRIEQARE-RFLGPEELTRIAVVLDNAEDQRGAAIIR 193

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSI----KTQKTGTIITVELPDGFMKLLA----MTP 249
             + +G R  +   A  +    +         T K   I  V +    + ++     + P
Sbjct: 194 MCMLTGARVGEVRTARFEQFNLDYVIWSKPAATTKQRKIHRVPISQEVVTIVRKRQMVVP 253

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMA 309
            G    F      +        W + +      +   H +R   A++    GA+   +  
Sbjct: 254 HGNPWLFPGETVGQPVREIRRFWARVQKEADLPDVRIHDLRHTFASLLVSGGASLEMIGR 313

Query: 310 TYGWKTVDQAETYTKGAD 327
             G   +   + Y    D
Sbjct: 314 LLGHSQMQTTQRYAHLMD 331


>gi|327404928|ref|YP_004345766.1| integrase family protein [Fluviicola taffensis DSM 16823]
 gi|327320436|gb|AEA44928.1| integrase family protein [Fluviicola taffensis DSM 16823]
          Length = 420

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 39/262 (14%), Positives = 94/262 (35%), Gaps = 22/262 (8%)

Query: 89  VNSRISFE------SYFDQIIRKSGDFDYRKITTKHIRSG----VESRKHTPSSAIQFLT 138
             +   +       + F ++  K+ D    ++    +       +   K   ++A +++ 
Sbjct: 133 PKTLTRYHITRNKVANFIKLQFKAADKPLPEMRLSFVTEFEHYLLTVEKIQSNTAHKYIK 192

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF--KSFWSEGSQP-RLA 195
           +++ +   AV  +++  NP    +      +      ++++     K   +   +  R  
Sbjct: 193 NLKKIMNMAVGLDWIPSNPFTQFKCSYTSPD-REILNQDELNLIMNKKMHTARLEEVRDV 251

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVELPDGFMKLLAMTPI 250
           F F  Y+G   +D  +     +          S   QKTGT  +V L    +++L+    
Sbjct: 252 FIFCCYTGFAYADVYQFEKDAVMKGLDGNLWLSTNRQKTGTKESVPLLPIPLEILSKYQD 311

Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSAT-ISADAGATAHEL 307
            +     N      +  +++ + K  A   G+ K  ++H  R   AT ++   G     +
Sbjct: 312 HEYCLKYNKLLPVNSNQRYNSYLKEIADLCGIKKKLTSHIARHTFATTVTLANGVPIETV 371

Query: 308 MATYGWKTVDQAETYTKGADRI 329
            A  G   +   + Y K  ++ 
Sbjct: 372 SAMLGHSNIRTTQIYAKVVEQK 393


>gi|307694054|ref|ZP_07636291.1| integrase family protein [Ruminococcaceae bacterium D16]
          Length = 457

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 57/354 (16%), Positives = 101/354 (28%), Gaps = 83/354 (23%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTK----HIR 120
               T+  L+ EY       + A+++  S +S   + I    GD     +T +    + R
Sbjct: 56  PSAKTVNDLLDEYMSIYGVNTWAMSTYESRKSLIANYIRPLIGDMKLEDVTPRIMDKYYR 115

Query: 121 SGVESRK------------HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168
             +  +              TP +  +   ++R  F  AV+ E +  NP      PK + 
Sbjct: 116 DLLSVKAVSSKYVKARTEYLTPHTVREVHKTLRNAFNQAVKWELMTRNPVEHATLPKEEH 175

Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---------- 218
           +    WT E +Q+      +    RLA        LR  +        +           
Sbjct: 176 KTRDIWTAEVLQKALEACDD-DILRLAINLAFSCSLRMGELLGLTWDCIDISPTSIELGQ 234

Query: 219 --------------------NN----------------IFSIKTQKTGTIIT-VELP--- 238
                               +                    +KT KT T +  V LP   
Sbjct: 235 ASIFVEKELQRVNREAMADLDGKDIMFKFPPTFASTHTALVLKTPKTKTSVRKVFLPKTV 294

Query: 239 -----------DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SA 286
                      +    L     +     F +++ + +     +  F     + G+ K   
Sbjct: 295 AEMLVQRKADIEELKDLFGDEFVDFNLVFCSSNGKPIEGQVINRAFNKLIEEKGLPKVVF 354

Query: 287 HGVRKFSATI-SADAGATAHELMATYGWKTVDQ-AETYTKGA-DRIRLGIKNSR 337
           H +R  S T      G     +    G   V   A+ Y+    D  RL  +   
Sbjct: 355 HSLRHSSITYKLKLNGGDMKSVQGDSGHAQVKMVADVYSHIIDDDRRLNAERME 408


>gi|255283631|ref|ZP_05348186.1| phage integrase [Bryantella formatexigens DSM 14469]
 gi|255265893|gb|EET59098.1| phage integrase [Bryantella formatexigens DSM 14469]
          Length = 361

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 55/283 (19%), Positives = 92/283 (32%), Gaps = 29/283 (10%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR-- 126
           T    +  Y +      L  N+ ++ E     +++    D   R I  K I      +  
Sbjct: 57  TFDEFVQAYTRDMK-PKLKQNTWLTKEHILRTKLLPYFKDKKMRDIRPKDIIQWQNEQIS 115

Query: 127 ----KHTPSSAIQFLTS---MRVLFKWAVRQEYVAINPCLSVERP-KRKTEGIRPWTKED 178
               K  P +     T    +  LF  AVR   +  NP +      K K E +  WTKED
Sbjct: 116 YRDEKGKPYAPTYLKTLQSELSALFNHAVRFYELNSNPVVKAGPLGKGKAEEMLFWTKED 175

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT--------- 229
             +F     +      AF+ L + GLR  +      Q +  +   I+  K+         
Sbjct: 176 YLKFIEAVKDKPYSYHAFQILYWCGLRVGELLALTPQDIDFDNKVIRITKSYQWLEGKDV 235

Query: 230 -------GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
                   +   V +PD   + L             +    +  +         A KAGV
Sbjct: 236 ITDPKTPKSKRNVSMPDFLCEELKDYIGRLYGILPTDCIFHLTKSFLHHEMTRGAEKAGV 295

Query: 283 NK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            +   H +R    ++    G +A  +    G ++VD    Y  
Sbjct: 296 KRIRIHDLRHSHVSLLISMGFSAVSIGNRVGHESVDITYRYAH 338


>gi|197284777|ref|YP_002150649.1| integrase [Proteus mirabilis HI4320]
 gi|194682264|emb|CAR41998.1| integrase [Proteus mirabilis HI4320]
          Length = 377

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 57/359 (15%), Positives = 118/359 (32%), Gaps = 52/359 (14%)

Query: 9   PFVTKERT-RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGST------------ 55
           P + ++   R+GKI + ++     +       E     A  +A+  +T            
Sbjct: 13  PNLYRKLDKRNGKIYWQYKHPITGKFHSLGTDEQE---ARETAIQANTIIAEQHTRQLLS 69

Query: 56  -PKREYINSPRKKPTTLKWLISEYR----KSAHWGSLAVNSRISFESYFDQIIRKSGDFD 110
             +R       K   ++   + +Y     +    G L +NS        +   +  G   
Sbjct: 70  INERLSKIKTNKSEISVDIWVDKYLDIQKERLDIGELKINSYRQKMKPINLFRQYCGTKI 129

Query: 111 YRKITTKHIRSGVESRKHTPSSAIQFLT--SMRVLFKWAVRQEYVAI--NPCLSVERPKR 166
            ++IT   I   ++S K    S +  +    +  +FK A    YV    NP  + ++P+ 
Sbjct: 130 LKEITALDIAEIIDSVKALGHSRMAQVVRMVLIDVFKEAQHAGYVPPGYNPAKATKQPRN 189

Query: 167 KTEGIRPWTKEDMQQ-FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225
           + +  R  T ++    +          +      L +G R  D C      + +++  ++
Sbjct: 190 RVKRERM-TLDEWNTIYLQAEKHPPYLQCGMLLALITGQRIGDICNMKFTDIWDDMLHVQ 248

Query: 226 TQKTGTIITVE-------LPDGFMKLLAMTPIG---------KETFFINNDKQKMNATQF 269
            +KTG+ + +        L      ++A              + T       ++      
Sbjct: 249 QEKTGSKLAIPLSLKCDALNMSLRDVIARCRDAVVSKYLVHYRHTTSQAKRGEQATPNTL 308

Query: 270 SIWFKAKATKAGVNK------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           +  FK    K G+        + H  R  S  +  + G    +L    G KT    + Y
Sbjct: 309 TTTFKKARDKCGLTWEKGTAPTFHEQRSLSERLYREQGINTQKL---LGHKTQKMTDKY 364


>gi|189499552|ref|YP_001959022.1| integrase family protein [Chlorobium phaeobacteroides BS1]
 gi|189494993|gb|ACE03541.1| integrase family protein [Chlorobium phaeobacteroides BS1]
          Length = 330

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 40/305 (13%), Positives = 81/305 (26%), Gaps = 57/305 (18%)

Query: 75  ISEYRKSAHW-------GSLAVNSRISFESYFDQIIR-----KSGDFD-----YRKITTK 117
           +SEY     +          + ++  ++     Q          G+         +I  +
Sbjct: 11  LSEYYALGEFVEYMRAQRKYSEHTCKAYSKDITQFYEFLSLQHGGEKAADPGLVTRIDMR 70

Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA-INPCLSVERPKRKTEGIRPWTK 176
                +  +   P S  + L S++  + + +    +    P   V  P+          +
Sbjct: 71  LFLGFLLKKGLQPKSIARKLASVKSFYNYLLETGRIKVSVPAQVVT-PRFSKTVPGFLNE 129

Query: 177 EDMQQFKSFWSEG-------------------SQPRLAFEFLLYSGLRCSDSCRAGVQHL 217
           E  +                            S+ R   E L   GLR S+      + +
Sbjct: 130 EQTETLFDHILAAPQHLSGSSKNTRYEDEFTYSRDRAILELLYGCGLRISEVVHLEREQV 189

Query: 218 QNNIFSIKTQKTGTIITV-ELPDGFMKLLAMTP--------------IGKETFFINNDK- 261
                 +K    G    V  L    ++ L                        F+     
Sbjct: 190 NIEQGFMKINGKGNKQRVLPLGSYAVEALKNYFEVKRNFFRMKKGEVSAAAYVFVTKKGI 249

Query: 262 --QKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
               +   + +  + +  T+    K+ H +R   AT   + GA    +    G   +   
Sbjct: 250 GIYPVLVQRLTKKYLSAVTELKY-KNPHALRHSFATHMLNNGADLKSVSEMLGHANLTTT 308

Query: 320 ETYTK 324
           E YT 
Sbjct: 309 EIYTH 313


>gi|313683548|ref|YP_004061286.1| integrase family protein [Sulfuricurvum kujiense DSM 16994]
 gi|313156408|gb|ADR35086.1| integrase family protein [Sulfuricurvum kujiense DSM 16994]
          Length = 390

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 39/265 (14%), Positives = 90/265 (33%), Gaps = 35/265 (13%)

Query: 93  ISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAV 148
             + +  ++ ++ K G+   ++I    I++        K + S   +    ++ +  +A+
Sbjct: 105 KDYLNILEKDVLPKFGNMALKEIKVSDIKAWQVEMGKGKISQSRFNKKYYVVKRVLDYAI 164

Query: 149 RQEYVAINPCLSVER-----PKRKTEGIRPWTKEDMQQFKSFWSEGSQPR---------L 194
              Y+  NP   V+R      K K+   + +T E++++  S   EG+  +          
Sbjct: 165 ENGYIGSNPISLVKRSSKLFIKAKSNNSKYFTAEEVEKILSDRFEGANDKEKLSHAFLVA 224

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ---------KTGTIITVELPDGFMK 243
                  +G R  +      + +       +I+           KT T   V +    + 
Sbjct: 225 FLHVAFLTGARTGEIMALKWEDIDFSTKTITIRRSIRKGIISVTKTDTERVVPMVHRLID 284

Query: 244 LLAMTP--IGKETFF-INNDKQKMNATQ--FSIWFKAKATKAGVNKSA-HGVRKFSATIS 297
            L        +E  F + N     +  +      FK    + G+     +  R   A+I+
Sbjct: 285 ALLKWKDNTHREYVFPVPNKGTPYSEPRSIVDSKFKPMLERLGIPYKILYCTRATFASIA 344

Query: 298 ADAGATAHELMATYGWKTVDQAETY 322
            + G +   +    G   +   + Y
Sbjct: 345 VEKGISIPIVSTCLGHGNIATTQRY 369


>gi|160874839|ref|YP_001554155.1| integrase family protein [Shewanella baltica OS195]
 gi|160860361|gb|ABX48895.1| integrase family protein [Shewanella baltica OS195]
          Length = 210

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 36/182 (19%), Positives = 59/182 (32%), Gaps = 15/182 (8%)

Query: 157 PCLSV----ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRA 212
           PCL +    + PKR  +  +  + +D+        +  + R         GLR S+    
Sbjct: 4   PCLLIELSNKAPKRPHKLPQLLSCQDIAALL-CHCQNLKQRAMLALCYGCGLRVSELTHI 62

Query: 213 GVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLA---MTPIGKETFFINNDK---QKM 264
            V  +      +K    K      V +    + LL          E  F +        +
Sbjct: 63  KVADIDGQRQLLKVCQGKGAYDRLVIISPTLLTLLRQYWRAYHPVEWLFASTYHDVVYPL 122

Query: 265 NATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           + + F       A  A +    S H +R   AT    AG   H+L A  G  ++   E Y
Sbjct: 123 HESTFRKALAKAARLASITKPCSPHSLRHAYATHQLQAGMPLHQLQAQLGHHSIKSTERY 182

Query: 323 TK 324
             
Sbjct: 183 LH 184


>gi|325857601|ref|ZP_08172537.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
 gi|325483107|gb|EGC86089.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
          Length = 409

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 44/256 (17%), Positives = 85/256 (33%), Gaps = 28/256 (10%)

Query: 89  VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES-------RKHTPSSAIQFLTSMR 141
            ++RI  + +  +   K  D  + ++T + I    +        ++ T  +A  FL ++ 
Sbjct: 138 HSTRIHLQRFIQR-KYKVSDLAFSQLTEQFIYDFRQYFVGECGFQECTFYNAATFLKTV- 195

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-----FKSFWSEGSQPRLAF 196
              + A R+           +  K   +  +   +E + +     F+    E    R  F
Sbjct: 196 --CRLAYREGLADTLLFDKAKISKGDNKLPKALDREALDKLKVLRFEDLEEEMETARDIF 253

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251
            F  Y G    D       HL  +           QKTG +  V+L    ++L+      
Sbjct: 254 LFACYVGAAYCDLMELSKSHLVRDDEGSLWLKFNRQKTGVLCRVKLLPEAIRLIERFHSD 313

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS-ADAGATAHELM 308
           +    +      +    +    KA   +AG+    + H  R   AT+   + G     + 
Sbjct: 314 ERETLL----PFIKYKNYQSCLKALRLRAGISFPFTTHTARHTFATLITLEQGVPIETVS 369

Query: 309 ATYGWKTVDQAETYTK 324
              G   +   E Y K
Sbjct: 370 KMLGHSNISMTERYAK 385


>gi|315607652|ref|ZP_07882647.1| integrase [Prevotella buccae ATCC 33574]
 gi|315250835|gb|EFU30829.1| integrase [Prevotella buccae ATCC 33574]
          Length = 409

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 44/256 (17%), Positives = 85/256 (33%), Gaps = 28/256 (10%)

Query: 89  VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES-------RKHTPSSAIQFLTSMR 141
            ++RI  + +  +   K  D  + ++T + I    +        ++ T  +A  FL ++ 
Sbjct: 138 HSTRIHLQRFIQR-KYKVSDLAFSQLTEQFIYDFRQYFVGECGFQECTFYNAATFLKTV- 195

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-----FKSFWSEGSQPRLAF 196
              + A R+           +  K   +  +   +E + +     F+    E    R  F
Sbjct: 196 --CRLAYREGLADTLLFDKAKISKGDNKLPKALDREALDKLKVLRFEDLEEEMETARDIF 253

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251
            F  Y G    D       HL  +           QKTG +  V+L    ++L+      
Sbjct: 254 LFACYVGAAYCDLMELSKSHLVRDDEGSLWLKFNRQKTGVLCRVKLLPEAIRLIERFHSD 313

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS-ADAGATAHELM 308
           +    +      +    +    KA   +AG+    + H  R   AT+   + G     + 
Sbjct: 314 ERETLL----PFIKYKNYQSCLKALRLRAGISFPFTTHTARHTFATLITLEQGVPIETVS 369

Query: 309 ATYGWKTVDQAETYTK 324
              G   +   E Y K
Sbjct: 370 KMLGHSNISMTERYAK 385


>gi|295134620|ref|YP_003585296.1| transposase [Zunongwangia profunda SM-A87]
 gi|294982635|gb|ADF53100.1| putative transposase [Zunongwangia profunda SM-A87]
          Length = 392

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 50/304 (16%), Positives = 100/304 (32%), Gaps = 32/304 (10%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISF---ESYFDQII---R 104
           +T S  K  Y+   +K   TL  L+  Y  +   G L   +  ++   E+Y    +   R
Sbjct: 84  ITASAVKSRYLGIDKKH-YTLTQLLD-YHSTKMKGVLKYGTLKNYTTTETYLKNYLKEKR 141

Query: 105 KSGDFDYRKITTKHIRSGVESRKHTPSSAI----QFLTSMRVLFKWAVRQEYVAINPCLS 160
              D   ++I  +         +  PS +     + +   + L   +   +++  NP   
Sbjct: 142 TISDIYLKQIDYQFTLGFERFLRDLPSLSNNGVMKHMERFKKLMHLSEDLDWIEKNPTKR 201

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ---PRLAFEFLLYSGLRCSDSCRAGVQHL 217
            +      +     +K ++Q+ K    + S     R  F F  Y+GL   D      +H+
Sbjct: 202 FKLRFHHVDM-VYLSKAELQKIKEKKFKRSTLSINRDIFVFCCYTGLPYGDVLELKKKHI 260

Query: 218 QNN-----IFSIKTQKTGTIITVELPDGFMKLLAMTP----IGKETFFINNDKQKMNATQ 268
           Q           +  KT T++ + L +   ++L        +      +     +     
Sbjct: 261 QIGIDGKKWIYTRRMKTNTLLRIPLLEEAERILEKYKEHPRVSNSDILLPVYSNQKTNQY 320

Query: 269 FSIWFKAKATKAGVNK--SAHGVRKFSAT-ISADAGATAHELMATYGWKTVDQAETYTKG 325
                +       +NK  S H  R   AT ++   G     +    G   +   + Y + 
Sbjct: 321 L----REITKAVKINKELSFHAARHTFATTVTLANGVPIETVSKLLGHTKLSTTQIYARV 376

Query: 326 ADRI 329
            D  
Sbjct: 377 IDSK 380


>gi|288927977|ref|ZP_06421824.1| integrase [Prevotella sp. oral taxon 317 str. F0108]
 gi|288330811|gb|EFC69395.1| integrase [Prevotella sp. oral taxon 317 str. F0108]
          Length = 409

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 44/256 (17%), Positives = 85/256 (33%), Gaps = 28/256 (10%)

Query: 89  VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES-------RKHTPSSAIQFLTSMR 141
            ++RI  + +  +   K  D  + ++T + I    +        ++ T  +A  FL ++ 
Sbjct: 138 HSTRIHLQRFIQR-KYKVSDLAFSQLTEQFIYDFRQYFVGECGFQECTFYNAATFLKTV- 195

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-----FKSFWSEGSQPRLAF 196
              + A R+           +  K   +  +   +E + +     F+    E    R  F
Sbjct: 196 --CRLAYREGLADTLLFDKAKISKGDNKLPKALDREALDKLKVLRFEDLEEEMETARDIF 253

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251
            F  Y G    D       HL  +           QKTG +  V+L    ++L+      
Sbjct: 254 LFACYVGAAYCDLMELSKSHLVRDDEGSLWLKFNRQKTGVLCRVKLLPEAIRLIERFHSD 313

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS-ADAGATAHELM 308
           +    +      +    +    KA   +AG+    + H  R   AT+   + G     + 
Sbjct: 314 ERETLL----PFIKYKNYQSCLKALRLRAGISFPFTTHTARHTFATLITLEQGVPIETVS 369

Query: 309 ATYGWKTVDQAETYTK 324
              G   +   E Y K
Sbjct: 370 KMLGHSNISMTERYAK 385


>gi|262038386|ref|ZP_06011763.1| site-specific recombinase, phage integrase family [Leptotrichia
           goodfellowii F0264]
 gi|261747604|gb|EEY35066.1| site-specific recombinase, phage integrase family [Leptotrichia
           goodfellowii F0264]
          Length = 342

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 45/276 (16%), Positives = 103/276 (37%), Gaps = 11/276 (3%)

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
           +  T   +  +++K   + ++  ++++ + + F +  +      +  + + H++  + + 
Sbjct: 68  QKITFSEVYEKWKKE-KFETVGHSAQLGYIAAF-KSCKTLHYTRFVDLKSSHLQEIISNP 125

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-PWTKEDMQQFKSF 185
                S  +       L+ +A++ + V+ +     +  K   E  R P+T E++Q+    
Sbjct: 126 GIKYGSKRKIKVLFNQLYAYAMKNDIVSKDYSKYTDTGKNTEESSRKPFTTEEIQRLWDL 185

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKT--GTIITVELPDGFM 242
             E          L+Y+G R  +        +  +N       KT  G    V +     
Sbjct: 186 VDENDWIDTIL-ILIYTGFRIGELLEIKNTDIDLDNRIIKGGLKTEAGKDRLVPINSKIY 244

Query: 243 KLLA-MTPIGKETFFINNDKQKM-NATQFSIWFKAKATKAGVNKSAHGVRKFSATISADA 300
            L+        E   +N   +KM  +  +   F+    + G+    H  R   AT+ ++A
Sbjct: 245 NLIKNRMSSDNEYLIVNFKGEKMKYSNYYREKFEPIMEELGMKHRPHDTRHTFATLLSNA 304

Query: 301 GATAHELMATYGWKTVDQAET-YT-KGADRIRLGIK 334
            A    +    G  +    E  YT K  + +R  I+
Sbjct: 305 DANKTSVKKLIGHNSYTTTEKFYTHKDIEELRKAIE 340


>gi|89893554|ref|YP_517041.1| hypothetical protein DSY0808 [Desulfitobacterium hafniense Y51]
 gi|89333002|dbj|BAE82597.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 308

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 41/281 (14%), Positives = 96/281 (34%), Gaps = 46/281 (16%)

Query: 111 YRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170
           Y+ +    IR   +  K +  S   +   +  + + A++ + +  NP   VE PK + + 
Sbjct: 27  YKYLEQDGIRQDGKPGKLSDRSIRYYHAVLSSMLEDAMKWQLITSNPAARVEAPKVRRKQ 86

Query: 171 IRPWTKED-MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN---------- 219
              + +    +  ++ +SE  + R+     LY+GLR  +      + +            
Sbjct: 87  TTSYDETQSAELLQALYSEPIKYRVLTTLALYTGLRRGELLGLEWKVIDMENAQIAVVKQ 146

Query: 220 -------NIFSIKTQKTGTIITVELPDGFMKLLAMTPIG--------------KETFFIN 258
                   +   KT+  G+   + +P   + LL                     +  F  
Sbjct: 147 SQYTPETGVVDRKTKTEGSQRLISIPTSIVTLLKEYKAAQNEERLKVGSLWQPSDKLFTT 206

Query: 259 NDKQKMNATQFSIWFKAKATK----------AGVNK-SAHGVRKFSATISADAGATAHEL 307
            + + M+    S WF    T+          A +     H +R  SA++    G     +
Sbjct: 207 WNGKPMHPDTVSSWFNDFLTRYNEKTIQQGKASLPHIRFHDLRHTSASLLIAQGVPLKNV 266

Query: 308 MATYGWKTVD-QAETYTKGADRIRLGIKNSRRISSVVDSDD 347
            +  G  ++   A+ Y           + ++++  +++  +
Sbjct: 267 SSRLGHSSIAITADIYASALQSA--DKEAAQKLEDILNIKN 305


>gi|154148966|ref|YP_001406688.1| phage integrase family site specific recombinase [Campylobacter
           hominis ATCC BAA-381]
 gi|153804975|gb|ABS51982.1| site-specific recombinase, phage integrase family [Campylobacter
           hominis ATCC BAA-381]
          Length = 352

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 27/191 (14%), Positives = 66/191 (34%), Gaps = 18/191 (9%)

Query: 169 EGIRPWTKEDMQQFKSFWSEGS------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-- 220
           +     ++++++ F     +        +  LA + ++Y+G+R  ++     + +     
Sbjct: 162 KLPEFLSEDELKIFLEAVEKADFGKNTNRNMLAVKIIIYTGIRVGEAINLKFKDISEENG 221

Query: 221 --IFSIKTQKTGTIITVELPDGFMKLLAMTPI----GKETFFINNDKQKMNATQFSIWFK 274
             I  I+ +     + +       K +    I          +N   + +     S   +
Sbjct: 222 IYILRIRGKGNKYRVVMIKKHLIEKHIEALSINYLNEDGYLLVNAKGKPLTQAYISRIVE 281

Query: 275 AKATKAGVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330
                AG+ K    AH +R   AT+          +    G  ++D +  YT   + ++R
Sbjct: 282 KILISAGIRKEKNGAHMLRHTFATMLYKKQKDLVLVQEALGHASLDTSRIYTHFDSQKLR 341

Query: 331 LGIKNSRRISS 341
           L  K +   + 
Sbjct: 342 LAAKVAEDFAE 352


>gi|313635335|gb|EFS01619.1| phage integrase family site specific recombinase [Listeria
           seeligeri FSL N1-067]
          Length = 366

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 46/282 (16%), Positives = 87/282 (30%), Gaps = 32/282 (11%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--- 126
           T K L + Y +S          R     Y + +     D   +KIT  HIR   E     
Sbjct: 63  TFKQLGNLYFQSYTINHKPTYIRTQRGYYSNHLFPYFKDCLIKKITQTHIREFREHLLTL 122

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             + +S  + +  ++ +F  AV +  +  NPCL +++ K   + ++ WT  +   F S  
Sbjct: 123 NLSFNSINKHMILLKKIFDVAVDESLIYTNPCLRIKKLKIIKQKMQFWTTTEYLHFISCI 182

Query: 187 SEGSQPRLAF-EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT----------- 234
            E  +    F +    +G+R  +        +      I   KT + I            
Sbjct: 183 REDEEVHKIFYQTAYLTGMRAGELLALKWSDINLVKQEIHVCKTVSRIDGKMIVTPPKSE 242

Query: 235 -----VELPDGFMKLLA-----------MTPIGKETFFINNDKQKMNATQFSIWFKAKAT 278
                + +     K+LA                    F +     +     +   +    
Sbjct: 243 TSNRVITVNSKLAKMLADWKLAQSKLLPAISTKDLVVFQHKTSHPIRENFGTKKIQRICK 302

Query: 279 KAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
           +  V+    H  R     +  D G     +    G  ++   
Sbjct: 303 RCAVHPIRLHDFRHSHVALLIDNGENITVIKERMGHASITTT 344


>gi|308188180|ref|YP_003932311.1| Integrase [Pantoea vagans C9-1]
 gi|308058690|gb|ADO10862.1| Integrase [Pantoea vagans C9-1]
          Length = 337

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 32/201 (15%), Positives = 58/201 (28%), Gaps = 10/201 (4%)

Query: 129 TPSSAIQFLTSMRVLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           TP +    L   R +F    R  E+ A NP  ++   K     +   T E+++       
Sbjct: 128 TPRTVNLELAYFRAVFNELRRLDEWQAPNPLDNIREYKIAESEMAYLTDEEIRSLLRECE 187

Query: 188 EGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
             +   L    +  L +G R  ++       ++         K      + + D  +  L
Sbjct: 188 ASTSKDLLTVVKLCLATGARWGEAETLKGNQIRAGKVIFTKTKGKKNRAIPISDALIAEL 247

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAH 305
             +   K  F             F    K    +    +  H +R   A+     G    
Sbjct: 248 PASRKAKPLF-------SSCYAAFRSALKRAEIETPAGQLTHVLRHTFASHFMMNGGNIL 300

Query: 306 ELMATYGWKTVDQAETYTKGA 326
            L    G   +     Y+  A
Sbjct: 301 VLQRILGHTDIKVTMRYSHFA 321


>gi|157155436|ref|YP_001462104.1| phage integrase family site specific recombinase [Escherichia coli
           E24377A]
 gi|157077466|gb|ABV17174.1| site-specific recombinase, phage integrase family [Escherichia coli
           E24377A]
 gi|324113805|gb|EGC07780.1| phage integrase [Escherichia fergusonii B253]
          Length = 331

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 51/305 (16%), Positives = 96/305 (31%), Gaps = 22/305 (7%)

Query: 29  HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLA 88
            G+RIR           A+   +  +   +E++  P     TL  L+  +     +   +
Sbjct: 21  DGKRIR-RKFKTKGEAQAFERHVLVNYHNKEWLEKP-ADRRTLTELLGRWW---IYHGKS 75

Query: 89  VNSRISFESYFDQIIRKSGDF------DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRV 142
                        II K  +          K T    R  + +    P+S  + L  M  
Sbjct: 76  HERGDIERGRLTTIIAKFAEMGVSRADQLTKKTITDYRVVMMNDGLKPASVNRHLAIMSG 135

Query: 143 LFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201
           +F   +    Y + NP   ++R +     +   + E++ +  S          A    L 
Sbjct: 136 MFTKLIDAGEYHSHNPFREIKRLREAVTEMAFLSSEEITRLLSMLD--GDELNATLVCLS 193

Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK 261
           +G R S+      +H+ N + +    K G   T+ +    +K +     G+     N   
Sbjct: 194 TGGRWSEVSNLKAEHIINQMVTFMKTKNGKRRTIPVSQDLIKRIKTKNSGR---LFNA-- 248

Query: 262 QKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
              +  +     +         ++ H +R   AT     G     L    G   + Q  T
Sbjct: 249 ---SYYKVRNALREVKPDLPDGQAVHVLRHTFATHFIMNGGNIITLQRILGHSNIQQTMT 305

Query: 322 YTKGA 326
           Y   A
Sbjct: 306 YAHFA 310


>gi|295090947|emb|CBK77054.1| Site-specific recombinase XerD [Clostridium cf. saccharolyticum
           K10]
          Length = 327

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 35/286 (12%), Positives = 86/286 (30%), Gaps = 14/286 (4%)

Query: 50  ALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF 109
           AL  +                   L+  +  +      +  S   +    + ++   G  
Sbjct: 28  ALEDALQGATVTYEGAHNEGNQADLVEAFIIAKRIEGCSEKSLKYYRKTIEALLAGIGKT 87

Query: 110 DYRKITTKHIRSGVE----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165
             ++ITT+ +R+ +      R  +  +       +   F W   ++++  +P   + + K
Sbjct: 88  A-QQITTEDLRTYLTNYQIQRGSSKVTIDNIRRILSSFFSWLEDEDFILKSPVRRIHKVK 146

Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSI 224
                   +T E ++  +   +  ++     + L  SG+R  +        +  N    +
Sbjct: 147 TAKVVKDTYTDEALELMRDNCT-NARDLAIIDLLASSGMRVGEMVMLNRDDIDFNERECV 205

Query: 225 KTQKTGTIITVELPDG----FMKLLAMTPIGKETFFIN--NDKQKMNATQFSIWFKAKAT 278
              K      V             L          F++     +++         +    
Sbjct: 206 VIGKGNKERLVYFDARTKIHLQNYLNERTDANPALFVSLKAPNERLMIGGVETRLREMGK 265

Query: 279 KAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           +  + K   H  R+  AT + D G    ++    G + +D    Y 
Sbjct: 266 RLNLQKVHPHKFRRTLATSAIDKGMPIEQVQQLLGHQKIDTTMHYA 311


>gi|318605374|emb|CBY26872.1| putative bacteriophage integrase [Yersinia enterocolitica subsp.
           palearctica Y11]
          Length = 341

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 47/329 (14%), Positives = 93/329 (28%), Gaps = 32/329 (9%)

Query: 18  HGKII--YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75
           +GK +  +Y      +R+R  +      +      L                   LK L+
Sbjct: 8   NGKWVCDFYSDGRDSKRVRKTFVTRGEALRFEREQLVQRGDLDIDYTPAESAAQRLKTLV 67

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-----KHTP 130
           S++         +++   +     + +    GD        +   +  + R        P
Sbjct: 68  SQWY---ELHGRSLSDGKARLDKLNILCDNLGDPAVADFDREVFANYRKQRLAGEFSRKP 124

Query: 131 ----------SSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDM 179
                     ++  +    +R +F    R   +   NP   V   +     +    ++D+
Sbjct: 125 KHGIVKPPKEATVNREHAYLRAVFNELKRLGHWNHANPLDGVRLFRESENELTFLYEDDI 184

Query: 180 QQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237
           ++        S   L       L +G R S++ +     +  N  +    K+    TV +
Sbjct: 185 KRLLYECDNSSNKDLGIIVRICLATGARWSEAEQLRQAQVMPNKITYINTKSKKNRTVPI 244

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATIS 297
                KL+   P  K   F N          F              +  H +R   A+  
Sbjct: 245 SAELHKLI---PKMKGRLFANAY------DAFGQAIDRAKLVLPTGQLTHVLRHTFASHF 295

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGA 326
              G     L    G  T+     Y+  A
Sbjct: 296 MMNGGNILVLQQILGHSTIQMTMRYSHFA 324


>gi|262381150|ref|ZP_06074288.1| integrase [Bacteroides sp. 2_1_33B]
 gi|301311180|ref|ZP_07217108.1| integrase protein [Bacteroides sp. 20_3]
 gi|262296327|gb|EEY84257.1| integrase [Bacteroides sp. 2_1_33B]
 gi|300830754|gb|EFK61396.1| integrase protein [Bacteroides sp. 20_3]
          Length = 392

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 38/267 (14%), Positives = 94/267 (35%), Gaps = 33/267 (12%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVESRKHTPSSAIQFLTSMR 141
            +L  ++  +  S    +     D  ++ I           +  +++  ++  + +  ++
Sbjct: 118 SNLKESTLKNHLSTLHVLSLYKKDVLFKDINFNFLCDFEYFLLKQEYHRNTIAKHMKHLK 177

Query: 142 VLFKWAVRQEY--VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP-RLAFEF 198
                A+ +E   +   P    +   ++++     T E++ + ++   +G +  R   + 
Sbjct: 178 RYINLAINKELFELHKYPFRKYKIKYQESKRTH-LTPEELGRLENLKLDGQRTLRRCLDM 236

Query: 199 LL---YSGLRCSDSCRAGVQH---LQNN-IFSIKTQKTGTIITVEL--------PDGFMK 243
            L   Y+GLR SD      ++   + +       + KT   + + L           + +
Sbjct: 237 FLFSCYTGLRFSDIVSITKENFLIIDDKVWLVYSSVKTDVSVRLPLFLLFEGKSLPIYER 296

Query: 244 LLAMTPIGKETFFINNDKQKMNATQ-FSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
                     T F       +++    +   +  +  A ++K  S H  R  +AT+    
Sbjct: 297 YKNAP----RTLF----GVPLSSNSNVNKQLRRISQLASIDKKVSFHTARHTNATLLLYN 348

Query: 301 GATAHELMATYGWKTVDQAETYTKGAD 327
           GA    +    G K+V   E Y+   D
Sbjct: 349 GANITTVQKLLGHKSVRTTEIYSNIMD 375


>gi|257869751|ref|ZP_05649404.1| integrase [Enterococcus gallinarum EG2]
 gi|331087644|ref|ZP_08336572.1| transposase [Lachnospiraceae bacterium 3_1_46FAA]
 gi|257803915|gb|EEV32737.1| integrase [Enterococcus gallinarum EG2]
 gi|330399823|gb|EGG79483.1| transposase [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 397

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 60/377 (15%), Positives = 106/377 (28%), Gaps = 59/377 (15%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
            ++ K     G   Y +          P P      P+            E       K 
Sbjct: 24  KYLYKYVDAFGNTKYVYAWRLTP--TDPTPKGKREKPSLRELEQQIRRDIEDGIDSTGKK 81

Query: 69  TTLKWLISEY-RKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRSGVESR 126
            T   L   Y +++    ++  +++   E     +   K G      I     +      
Sbjct: 82  MT---LCQLYAKQNTQRANVKKSTQKQREQLMRLLKEDKLGARSIDTIKPSDAKEWALRM 138

Query: 127 KHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPC--LSVERPKRKTEGIRPWTKEDMQQ 181
           K      ++      S++  F  A++ + V  NP      E  +  T+     T+E  Q 
Sbjct: 139 KDKGFSYNTINNHKRSLKASFYIAIQDDCVRKNPFDFKLSEVLENDTKEKVALTEEQEQA 198

Query: 182 FKSFWSEGSQPRLAFE---FLLYSGLRCSDSCRAGVQHLQ----------------NNIF 222
             SF    +     ++    LL +GLR S+ C   +  +                    +
Sbjct: 199 LLSFIKTDNVYHKYYDDVLILLKTGLRISELCGLTIMDVDFIHEVVVIDHQLLKSKEQGY 258

Query: 223 SIKTQKTGTIIT-VELPDG--------FMKLLAMTP----IGKETFFINNDKQKMNATQF 269
            I+T KT + I  V L             K     P          F+N+  +   A  +
Sbjct: 259 YIETPKTKSGIRQVPLSRETIQAFQRVMKKHPKAEPFVIDGRSNFLFVNHKGKPKVAIDY 318

Query: 270 SIWFKAKATKAGVNK--------SAHGVRKFSATISADAGATAHELMATYGWKTVD---- 317
           +  F     K   +         + H +R    T  A       +L    G   +     
Sbjct: 319 NALFVRMIKKYNKHHKDNPLPHITPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISITMN 378

Query: 318 ---QAETYTKGADRIRL 331
               A   T  ++  RL
Sbjct: 379 WYAHASIDTAKSEVQRL 395


>gi|150007153|ref|YP_001301896.1| integrase [Parabacteroides distasonis ATCC 8503]
 gi|255015232|ref|ZP_05287358.1| integrase [Bacteroides sp. 2_1_7]
 gi|256840529|ref|ZP_05546037.1| integrase [Parabacteroides sp. D13]
 gi|298377579|ref|ZP_06987531.1| integrase [Bacteroides sp. 3_1_19]
 gi|149935577|gb|ABR42274.1| integrase [Parabacteroides distasonis ATCC 8503]
 gi|256737801|gb|EEU51127.1| integrase [Parabacteroides sp. D13]
 gi|298265598|gb|EFI07259.1| integrase [Bacteroides sp. 3_1_19]
          Length = 392

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 38/267 (14%), Positives = 94/267 (35%), Gaps = 33/267 (12%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVESRKHTPSSAIQFLTSMR 141
            +L  ++  +  S    +     D  ++ I           +  +++  ++  + +  ++
Sbjct: 118 SNLKESTLKNHLSTLHVLSLYKKDVLFKDINFNFLCDFEYFLLKQEYHRNTIAKHMKHLK 177

Query: 142 VLFKWAVRQEY--VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP-RLAFEF 198
                A+ +E   +   P    +   ++++     T E++ + ++   +G +  R   + 
Sbjct: 178 RYINLAINKELFELHKYPFRKYKIKYQESKRTH-LTPEELGRLENLKLDGQRTLRRCLDM 236

Query: 199 LL---YSGLRCSDSCRAGVQH---LQNN-IFSIKTQKTGTIITVEL--------PDGFMK 243
            L   Y+GLR SD      ++   + +       + KT   + + L           + +
Sbjct: 237 FLFSCYTGLRFSDIVSITKENFLIIDDKVWLVYSSVKTDVSVRLPLFLLFEGKSLPIYER 296

Query: 244 LLAMTPIGKETFFINNDKQKMNATQ-FSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
                     T F       +++    +   +  +  A ++K  S H  R  +AT+    
Sbjct: 297 YKNAP----RTLF----GVPLSSNSNVNKQLRRISQLASIDKKVSFHTARHTNATLLLYN 348

Query: 301 GATAHELMATYGWKTVDQAETYTKGAD 327
           GA    +    G K+V   E Y+   D
Sbjct: 349 GANITTVQKLLGHKSVRTTEIYSNIMD 375


>gi|257440124|ref|ZP_05615879.1| integrase/recombinase, phage integrase family [Faecalibacterium
           prausnitzii A2-165]
 gi|257197476|gb|EEU95760.1| integrase/recombinase, phage integrase family [Faecalibacterium
           prausnitzii A2-165]
          Length = 327

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 44/309 (14%), Positives = 100/309 (32%), Gaps = 23/309 (7%)

Query: 31  RRIRLPYPHESTFI---PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87
           +R  LPY +    +    A    L G+T   +  + P ++   ++  I+  R        
Sbjct: 10  QRKMLPYLNNEQLMHLRDAMAETLEGATITYDSGSIPAEETDAVEAFITAKRIEGC---- 65

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHTPSSAIQFLTSMRVL 143
           +  +   +    + +I   G    ++ITT  +R  +      R+ +  +       +   
Sbjct: 66  SEKTLSYYRKTIESLIAGVG-KAVQQITTDDLRRYLTNYQVQRRSSKVTIDNIRRILSSF 124

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203
           F W   ++++  +P   + + K        +T E ++  +   +  ++     + L  SG
Sbjct: 125 FSWLEDEDFIVKSPVRRIHKVKTAKVVKDTYTDEALELMRDNCTT-ARDLAMVDLLASSG 183

Query: 204 LRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDG----FMKLLAMTPIGKETFFIN 258
           +R  +      + +  N    +   K      V             L          F++
Sbjct: 184 MRVGELVTLNREDINFNERECVVIGKGNKERLVYFDARTKIHLQNYLEGRTDENPALFVS 243

Query: 259 NDKQKMNATQFS---IWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWK 314
             K   +           +    +  + K   H  R+  AT + D G    ++    G +
Sbjct: 244 L-KAPFDRLMIGGVETRLRELGKRLNIPKVHPHKFRRTLATTAIDKGMPIEQVQQLLGHQ 302

Query: 315 TVDQAETYT 323
            +D    Y 
Sbjct: 303 KIDTTMHYA 311


>gi|23452624|gb|AAN33109.1| VvuIntIA [Vibrio vulnificus]
          Length = 320

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 47/302 (15%), Positives = 87/302 (28%), Gaps = 59/302 (19%)

Query: 81  SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF--LT 138
                  A  +  ++ S+  Q I          +   H+   +         A +   L 
Sbjct: 12  HMRTRHYASKTIQAYISWIKQYIIFHKMAHPSTLNETHVEEFLSYLALEQKVAAKTQALA 71

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPK--RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196
              ++F +   +EY        ++  K     +     TK +++          + +L  
Sbjct: 72  LNSIMFLY---REYFRTPLSNEIKFQKSLLDRKLPVVLTKSELRSLIQHIDP--RYKLHI 126

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLAM------- 247
             L  SGLR  +  R  VQ +  +  +++    K G   TV L      +L         
Sbjct: 127 MLLYGSGLRVMECVRLRVQDIDYHYGALRIWQGKGGKNRTVTLAKELFPMLKQQEELALR 186

Query: 248 -------TPIGKETFFINN--------------------------------DKQKMNATQ 268
                  TP     +  ++                                 +  +N   
Sbjct: 187 YYQKDINTPGYSGVWLTHSLQRKYRGAEMDFNWHYLFPSEKLSIDPESNLLRRHHINEQS 246

Query: 269 FSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
                K  A  AG+ K+   H +R   AT   ++GA    +    G   V   + YT   
Sbjct: 247 LQRAVKRAAKDAGIEKTVTCHTLRHSFATHLLESGADIRTVQEQLGHSDVKTTQIYTHVL 306

Query: 327 DR 328
           +R
Sbjct: 307 ER 308


>gi|154244572|ref|YP_001415530.1| integrase family protein [Xanthobacter autotrophicus Py2]
 gi|154158657|gb|ABS65873.1| integrase family protein [Xanthobacter autotrophicus Py2]
          Length = 452

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 56/351 (15%), Positives = 99/351 (28%), Gaps = 46/351 (13%)

Query: 21  IIYYFRKGHGRR--IRLPYPHESTFIPAYMSALTGSTPKREYINSPR---KKPTTLKWLI 75
           ++ Y   G  RR  I L              A  G   + +     R   +K  T+K L 
Sbjct: 42  VLQYRSAGRSRRFTIGLHGVWTPERARQEAKAQLGRIAQGDDPAEERLLDRKALTVKELC 101

Query: 76  SEYRKSAHW--------GSLAVNSRI-SFESYFDQIIRKSGDFDYRKITTKHI-RSGVES 125
             Y                    +           I+   G    R +T   I R+  + 
Sbjct: 102 DLYLADLQAGLILGKGGRPKKPGTIASDLGRIHRHIVPLLGSRRVRDLTKADITRAMKDI 161

Query: 126 RKHT-------------------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
                                    +A + +  +  +  +AV    +  NP   V RPK 
Sbjct: 162 MAGKTRISVMTKNLRGRSIVRGGAGTATRTIGLLGGILTYAVEAGIIETNPAHGVRRPKD 221

Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQP---RLAFEFL---LYSGLRCSDSCRAGVQHLQNN 220
                R  ++ + +         S+    R++ E +     +G R  +           +
Sbjct: 222 NVRARR-LSEAEYRVLGDLLKTASKNENYRMSVEIIRQIALTGCRRMEMVTLRWDEADTD 280

Query: 221 I--FSIKTQKTGTIITVELPD--GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK 276
                +K  K G+ I         +++      IG    F     +    +  + W K  
Sbjct: 281 CSCLRLKDSKEGSSIRPIGLPVVEYLERRRNEAIGD-YVFPGRGGENAFGSFPNHWGKIF 339

Query: 277 ATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           A     + S H +R   A+++ D G T   + A  G         Y    D
Sbjct: 340 ANSPLADISPHVLRHSFASVANDLGFTEVTIAALVGHAKGSVTSNYIHTLD 390


>gi|293383666|ref|ZP_06629575.1| prophage LambdaSa03, site-specific recombinase, phage integrase
           family [Enterococcus faecalis R712]
 gi|312906214|ref|ZP_07765226.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis DAPTO 512]
 gi|312909560|ref|ZP_07768415.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis DAPTO 516]
 gi|291079002|gb|EFE16366.1| prophage LambdaSa03, site-specific recombinase, phage integrase
           family [Enterococcus faecalis R712]
 gi|310627860|gb|EFQ11143.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis DAPTO 512]
 gi|311290233|gb|EFQ68789.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis DAPTO 516]
          Length = 434

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 59/361 (16%), Positives = 119/361 (32%), Gaps = 50/361 (13%)

Query: 18  HGKIIYYFRKGHG---RRIRLPYPHESTFIPAYMSALTGSTPK-REYINSPRKKPTTLKW 73
           +GK  Y+ R       +  R+     S    A   A+     K    +    +K  +L+ 
Sbjct: 64  NGKFKYFERYKDPYTEKYRRVSVTLNSKSNQAKKQAMMELQDKINNRMEKKEQKKVSLEN 123

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG-DFDYRKITTKHIRSGVESRKHTPSS 132
           L++ + +     S+   S  ++      I      D   R   TK  +  +    H+   
Sbjct: 124 LLNSWWQQHQ-LSIRKTSVKAYGKILKYIFSNMNVDVLIRNTDTKFFQDFINDLPHSWEY 182

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVE--RPKRKTEGIR-----PWTKEDMQQFKSF 185
             +F + + + F +A     +  NP   V+  +P    E           ++++ Q  ++
Sbjct: 183 KKKFKSVLNMSFTYAQDMGMIDENPINRVKVVKPPLTKENFENIESKYLEEKEVYQLLNY 242

Query: 186 WSEG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------------ 229
           +          RLA EF+  +GLR  ++    +     N  +I    T            
Sbjct: 243 YYSTFQSVHHGRLA-EFMYLTGLRAGEAISLTINDYVKNEHAILVNGTLDYSNGYKNATK 301

Query: 230 ------GTIITVELPDGFMKLLAMTPIGKE--------TFFINNDKQKMNATQFSIWFKA 275
                  +   VEL +  +K++    + +E          F+    + +    F+   K 
Sbjct: 302 ELPKTLASFRKVELSNRAVKIIEELILEREIKFKEQTNYLFVGKTGRPIQVNSFNASLKK 361

Query: 276 KATKAGVNK-----SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRI 329
                G NK     S+H  R    ++ A+       +M   G    +   + YT    + 
Sbjct: 362 ANESLGKNKINKTISSHIFRHSHISLLAELNVPVKAIMERVGHVDTETTLKIYTHVTKKA 421

Query: 330 R 330
           +
Sbjct: 422 K 422


>gi|256961377|ref|ZP_05565548.1| prophage ps2 protein 01 [Enterococcus faecalis Merz96]
 gi|293387222|ref|ZP_06631780.1| prophage LambdaSa03, site-specific recombinase, phage integrase
           family [Enterococcus faecalis S613]
 gi|256951873|gb|EEU68505.1| prophage ps2 protein 01 [Enterococcus faecalis Merz96]
 gi|291083360|gb|EFE20323.1| prophage LambdaSa03, site-specific recombinase, phage integrase
           family [Enterococcus faecalis S613]
          Length = 378

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 59/361 (16%), Positives = 119/361 (32%), Gaps = 50/361 (13%)

Query: 18  HGKIIYYFRKGHG---RRIRLPYPHESTFIPAYMSALTGSTPK-REYINSPRKKPTTLKW 73
           +GK  Y+ R       +  R+     S    A   A+     K    +    +K  +L+ 
Sbjct: 8   NGKFKYFERYKDPYTEKYRRVSVTLNSKSNQAKKQAMMELQDKINNRMEKKEQKKVSLEN 67

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG-DFDYRKITTKHIRSGVESRKHTPSS 132
           L++ + +     S+   S  ++      I      D   R   TK  +  +    H+   
Sbjct: 68  LLNSWWQQHQ-LSIRKTSVKAYGKILKYIFSNMNVDVLIRNTDTKFFQDFINDLPHSWEY 126

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVE--RPKRKTEGIR-----PWTKEDMQQFKSF 185
             +F + + + F +A     +  NP   V+  +P    E           ++++ Q  ++
Sbjct: 127 KKKFKSVLNMSFTYAQDMGMIDENPINRVKVVKPPLTKENFENIESKYLEEKEVYQLLNY 186

Query: 186 WSEG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------------ 229
           +          RLA EF+  +GLR  ++    +     N  +I    T            
Sbjct: 187 YYSTFQSVHHGRLA-EFMYLTGLRAGEAISLTINDYVKNEHAILVNGTLDYSNGYKNATK 245

Query: 230 ------GTIITVELPDGFMKLLAMTPIGKE--------TFFINNDKQKMNATQFSIWFKA 275
                  +   VEL +  +K++    + +E          F+    + +    F+   K 
Sbjct: 246 ELPKTLASFRKVELSNRAVKIIEELILEREIKFKEQTNYLFVGKTGRPIQVNSFNASLKK 305

Query: 276 KATKAGVNK-----SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRI 329
                G NK     S+H  R    ++ A+       +M   G    +   + YT    + 
Sbjct: 306 ANESLGKNKINKTISSHIFRHSHISLLAELNVPVKAIMERVGHVDTETTLKIYTHVTKKA 365

Query: 330 R 330
           +
Sbjct: 366 K 366


>gi|168238569|ref|ZP_02663627.1| site-specific recombinase, phage integrase family protein
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|219681195|ref|YP_002455840.1| Int [Salmonella enterica bacteriophage SE1]
 gi|318065905|ref|YP_004123763.1| Int [Salmonella phage ST160]
 gi|66473810|gb|AAY46456.1| Int [Salmonella phage SE1]
 gi|197288610|gb|EDY27987.1| site-specific recombinase, phage integrase family protein
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|289066891|gb|ADC81102.1| Int [Salmonella phage ST160]
 gi|321224985|gb|EFX50046.1| Phage integrase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. TN061786]
          Length = 387

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 45/249 (18%), Positives = 89/249 (35%), Gaps = 34/249 (13%)

Query: 97  SYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAIN 156
              D+  RK+G                + +    ++    L+ ++ L + A  +E+  ++
Sbjct: 120 KLMDEACRKNGKQPPV----------FKPKPAAVATKATHLSFIKALLR-AAEREWKMLD 168

Query: 157 PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216
               ++ P+ K + IR     + ++      E  +     EF L +GLR S+      Q 
Sbjct: 169 KAPIIKVPQPKNKRIRWLEPHEAKRLIDECPEPLKS--VVEFALSTGLRRSNIINMEWQQ 226

Query: 217 LQNN----IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK----------- 261
           +           +  K+   I V L D   ++L    IG    ++   K           
Sbjct: 227 IDMQRKVAWIHPEQSKSNQAIGVALNDTACRVLKKQ-IGNHHKWVFVYKESSTKPDGTKS 285

Query: 262 ---QKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVD 317
              +KM     + W ++   +AG+ +   H +R   A+    AG     L    GW++++
Sbjct: 286 PVVRKMRYDANTAW-RSALKRAGIEDFRFHDLRHTWASWLVQAGVPISVLQEMGGWESIE 344

Query: 318 QAETYTKGA 326
               Y   A
Sbjct: 345 MVRRYAHLA 353


>gi|330502131|ref|YP_004379000.1| putative integrase [Pseudomonas mendocina NK-01]
 gi|328916417|gb|AEB57248.1| putative integrase [Pseudomonas mendocina NK-01]
          Length = 312

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 44/293 (15%), Positives = 89/293 (30%), Gaps = 25/293 (8%)

Query: 45  PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR 104
             + ++      +    +S  K   TL  L+  +    H  SL    R    S  D + +
Sbjct: 20  QRFEASCRAKVVENPDWSSRPKDCRTLAELVGLWF-DLHGHSLRDGERH--RSKLDALAK 76

Query: 105 KSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVA-INPCLS 160
           +  +    K+  +        R     +P +    L  +R ++        +   NP   
Sbjct: 77  RLRNPQGAKLDPQTYAQDRRIRLGEGASPKTLSNELGYLRAVYNELRGLGVLDYANPLAL 136

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHL 217
           V+  K +   +   T E + +       G       +     L +G R S++ +     L
Sbjct: 137 VKPLKVQERELSWLTTEQIAERLEEIRRGCDNPHVEIIALICLATGARWSEAEKLKPTGL 196

Query: 218 QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKA 277
           +N + +    K G + +V +                   + + KQ          F+   
Sbjct: 197 RNGVITFSGTKNGKVRSVPITAELEAK-----------IVRHWKQHGQPNSAITSFRRAL 245

Query: 278 TKAGV----NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            +  +     ++AH +R   A+     G     L    G   +     Y   A
Sbjct: 246 ARTTIRLPKGQAAHALRHTFASHFIQNGGNILTLQKIQGHSCLAMTMRYAHLA 298


>gi|299529325|ref|ZP_07042764.1| integrase family protein [Comamonas testosteroni S44]
 gi|298722703|gb|EFI63621.1| integrase family protein [Comamonas testosteroni S44]
          Length = 337

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 41/246 (16%), Positives = 85/246 (34%), Gaps = 21/246 (8%)

Query: 93  ISFESYFDQIIRKSGDFDYRKITTKHIRS------GVESRKHTPSSAIQFLTSMRVLFKW 146
            S+E+   ++      +  +  +     +      G + +  + ++    L+ +R   ++
Sbjct: 81  KSYENIVRELKACYSAYAGKPFSALPAIAISYRPVGDDKKLMSAATVRNRLSYLRAACRY 140

Query: 147 A-VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLR 205
           A         NP   +  PK + E      + +  +  S    G + R A     YSG+R
Sbjct: 141 AWKHHGLGDRNPAERISMPKVRNERHVYLGRAEFLKICSKIKPG-KERAAIRIAFYSGMR 199

Query: 206 CSDSCRAGVQHLQNNIFSIKTQ--KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK 263
            ++           ++F + +Q  K G    V +      ++    +            K
Sbjct: 200 AAEV-GLAKVAYGGDVFELSSQHTKNGQPRAVPIHPRVAHIVRNPDL---------WPVK 249

Query: 264 MNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
                 S  FKA A  AG      H +R  +A+   +AG   + +    G K+    + Y
Sbjct: 250 PTKWTVSKAFKAGARAAGFGHARLHDLRHSTASEMINAGVDLYTVGGVLGHKSAVSTKRY 309

Query: 323 TKGADR 328
           +  A +
Sbjct: 310 SHLATQ 315


>gi|256850691|ref|ZP_05556116.1| Lj965 prophage integrase [Lactobacillus crispatus MV-1A-US]
 gi|256712559|gb|EEU27555.1| Lj965 prophage integrase [Lactobacillus crispatus MV-1A-US]
          Length = 379

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 61/354 (17%), Positives = 122/354 (34%), Gaps = 49/354 (13%)

Query: 14  ERTRHGKIIY----YFRKGHGRRIRL--PYPHESTFIPAYMSALTGSTPKREYINSPRKK 67
            + + GK  Y    Y  + +G++++             A    L  + P+    +  ++K
Sbjct: 15  YKLKSGKKRYMFYIYLGQKNGQKVQTFRRGFKSYEEADAVYKQLAATNPQ----DFVKQK 70

Query: 68  PTTLKWLISEYRKSAHW-GSLAVNS-RISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
             T+  L +E+ K   +   +  ++ + ++E Y   I  + G+     +TTK I     S
Sbjct: 71  QYTVDQLWNEWFK--RYVLDVKPSTAQKTYELYNLHIKPEFGESYVDSLTTKTISDYFYS 128

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR-----KTEGIRPWTKEDMQ 180
                         +  L ++AV  E +  NP  S   PK+     +      +T ++++
Sbjct: 129 LAKEYKRYRTVFNYLHKLLEYAVDIELINRNPARSSLLPKKSAVKGRDTSHNFYTLDELK 188

Query: 181 QFKSFWSEGSQPRLAFEFLLY-SGLRCSDSCRAGVQHLQ--NNIFSIKTQ---------- 227
            F     E S     +  +L  +G+R S++           +    I+            
Sbjct: 189 LFLDTAKEISDQVYFYFLILATTGIRKSEAIALHWSDFDYEHKTIHIQRTTAYKLKIKGN 248

Query: 228 -------------KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274
                        K      V + D   ++             +N K     +  +  +K
Sbjct: 249 GEIETNDYGTQIPKGNETRIVPMSDLVYEISLHCRKDLNPLVFHNTKGDYYRSSKADKWK 308

Query: 275 AKATKAGVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTK 324
            +  +   N    + HG+R   ATI+ D G    ++    G K++D    TYT 
Sbjct: 309 KQIYEKNPNLKKITVHGLRHSFATIANDNGWNMVDVKNVLGHKSLDLTLGTYTH 362


>gi|182413753|ref|YP_001818819.1| integrase family protein [Opitutus terrae PB90-1]
 gi|177840967|gb|ACB75219.1| integrase family protein [Opitutus terrae PB90-1]
          Length = 391

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 49/292 (16%), Positives = 98/292 (33%), Gaps = 47/292 (16%)

Query: 86  SLAVNSRISFESYFDQIIRKSG---DFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSM 140
             A  +  +++      ++  G   + D  +I+   I +  +    + + ++A + L  +
Sbjct: 96  DTANRTFQAYKQVVRDFLKSLGPRAERDISQISKTDIVTYRDEVLTRTSIATANKSLKYL 155

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGI---RPWTKEDMQQFKSFWSEGSQPRLAFE 197
           RV    A +      N    V+  +R+ +     RP+T  +++   +  S   + R    
Sbjct: 156 RVALGAAYKDGLTQDNAASKVDAIRRRDDERKQRRPFTLGELKAILANASA--EWRGLIL 213

Query: 198 FLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET- 254
           F  Y+G R SD      Q+L     +    T KTG  + + +    +  +   P   +  
Sbjct: 214 FGFYTGQRLSDIANLTWQNLDLEREVIRFVTGKTGRQMEIPIAAPLLAHIETMPASDDPS 273

Query: 255 --FFINNDKQKMNAT---QFSIWFKAKATKAGVNK------------------------- 284
              F  +       +   + S  F      AG+ K                         
Sbjct: 274 APLFPESSSVAAGESADSRLSQHFYDLLVAAGLAKARRRDKQRDEGAPAHGRSRRRTVHE 333

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK---GADRIRLG 332
            S H +R  + ++  +AG +    M   G  +   +  YT     A R  L 
Sbjct: 334 ISFHSLRHTATSLLKNAGVSEAVAMDIIGHDSEAISRHYTHIETKAKRKALA 385


>gi|291515632|emb|CBK64842.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
          Length = 417

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 40/283 (14%), Positives = 100/283 (35%), Gaps = 30/283 (10%)

Query: 85  GSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGVES---RKHTPSSAIQ 135
              +  +   F   F  + R         D   R +  + ++   E+   +     +  +
Sbjct: 141 KEYSPATLQKFREVFAHVERYIRTSYNMQDIPIRSVDYRFVKQFEEALIVQGLKAITINK 200

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQP 192
            +  +R +  +A +  Y+  +P +     K +       T+E++ + +            
Sbjct: 201 IMQRVRQMVTFAFKCNYIQQDPFVEYRPLKERKRL-VFLTQEELHKLEHHHFAQKRLETV 259

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHL-----QNNIFSIKTQKTGTIITVELPDGFMKLLA- 246
           +  + F +Y+GL   ++     +H+       N  ++  QKT   ++V L     KL+A 
Sbjct: 260 KNIYLFSVYTGLAYHEAQALQPKHITKGFDGRNWITLVRQKTDREVSVPLLPQAEKLIAW 319

Query: 247 -MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSA-TISADAGA 302
                  + +     + +++  + + + +  A   G++K    H  RK  A TI      
Sbjct: 320 FREFGSTDDYI----QPRISNQKVNSYLREIADVVGIDKKLTHHTARKTFATTILLYNDV 375

Query: 303 TAHELMATYGWKTVDQAET-YTKGADRIRLGIKNSRRISSVVD 344
               +    G   +   +  Y +  ++      +  R+  V++
Sbjct: 376 PIEVVSKLLGHSNISVTQHSYAQVLNKN--ISNHIGRLEKVLN 416


>gi|251778556|ref|ZP_04821476.1| putative site-specific recombinase/integrase [Clostridium botulinum
           E1 str. 'BoNT E Beluga']
 gi|243082871|gb|EES48761.1| putative site-specific recombinase/integrase [Clostridium botulinum
           E1 str. 'BoNT E Beluga']
          Length = 291

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 37/283 (13%), Positives = 96/283 (33%), Gaps = 24/283 (8%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF------DYRKITTKHIRSGVESR 126
            +I +++ S      +  +  S+       I   GD         ++      ++ +   
Sbjct: 3   QVIEDFKISLVEDGKSSKTIESYVGDIKAFIEFLGDKGAEFNGTLQRFYVVSYKNFLVES 62

Query: 127 KHTPSSAIQFLTSMRVLFKWAVR----QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
            +  ++  + + S+  L ++ V     +E V  N    ++      + +  ++ +++++ 
Sbjct: 63  NYEVATINKKINSIHALNRYLVATGAMKEIVVENSKDRIKIAYGSEKQVEVYSDKEVERI 122

Query: 183 K----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVEL 237
                +      + ++    LLY+G+R S+ C   ++ +    +SIK   K G    V L
Sbjct: 123 LFYIQNEEKVSKRNKVIVMLLLYTGVRVSELCSIKIKDIDFLNYSIKIYGKGGKFREVPL 182

Query: 238 PDGFMKLLAMTPIGKET------FFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGV 289
                 ++      ++       + +   +  +     +   +      G+      H  
Sbjct: 183 KFDLADVIKEYIKDRDYNVKDSEYLVIGQRGALKRDAINTMLERLTKDIGMVNKLKPHTF 242

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAET-YTKGADRIRL 331
           R    T   + G     +    G  +VD   T Y   +   +L
Sbjct: 243 RHTFCTRLINRGVPISTVSKLAGHSSVDTTATFYINSSREEKL 285


>gi|237720976|ref|ZP_04551457.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4]
 gi|229449811|gb|EEO55602.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4]
          Length = 272

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 48/235 (20%), Positives = 84/235 (35%), Gaps = 35/235 (14%)

Query: 110 DYRKITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK-- 165
           +  K+  +     +E R   ++       L ++  L+                VE PK  
Sbjct: 34  NLSKVRLQTFVDYMEERLAPNSVRQYAAKLKAVLNLYN-------------EEVELPKDY 80

Query: 166 ------RKTEGIRPW-TKEDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQ 215
                 +       W T E++++  ++  + +     R  F    ++G R SD  R   +
Sbjct: 81  NKILSVKNVRSTNVWLTDEELERIITYVPKNANEQLVRTQFLIGAFTGCRHSDYTRLNNR 140

Query: 216 HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP---IGKETFFINNDK--QKMNATQFS 270
           ++   + S  + KT T  TV L     +LL   P   +   TF  N     +K   T+  
Sbjct: 141 NIVGGMISYVSLKTKTHATVPLKPIVKELLTNLPKEEVSDPTFNNNIRNICRKAGITEAV 200

Query: 271 IWFKAKATKAGVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
             FKA     G      S+H  R+  AT     GA  + +    G  +V+  + Y
Sbjct: 201 KVFKAGKEVEGEKWEFVSSHTARRSFATNLYLRGADLYSISQMMGHASVEMTQNY 255


>gi|312971274|ref|ZP_07785452.1| integrase [Escherichia coli 1827-70]
 gi|310336476|gb|EFQ01662.1| integrase [Escherichia coli 1827-70]
          Length = 380

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 59/358 (16%), Positives = 111/358 (31%), Gaps = 50/358 (13%)

Query: 9   PFVTKERT-RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTG----------STPK 57
           P +  +   R GK+ + ++     R       E+        A T           S  +
Sbjct: 13  PNLYCKLDKRTGKVYWQYKHPLSGRFHSLGTDENEAKQVATEANTIIAEQRTRQILSVNE 72

Query: 58  REYINSPRKKPTTLKWLISEYRKSAH----WGSLAVNSRISFESYFDQIIRKSGDFDYRK 113
           R      R+   T+   + +Y            L  NS               G    + 
Sbjct: 73  RLERMKGRRSDITVTEWLDKYISIQEDRLQHNELRPNSYRQKGKPIRLFREHCGMQHLKD 132

Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMRVL----FKWAVRQEYVA--INPCLSVERPKRK 167
           IT   I   +++ K       +    +R++    FK A    +V    NP  + ++P+ +
Sbjct: 133 ITALDIAEIIDAVKAEGH--NRMAQVVRMVLIDVFKEAQHAGHVPPGFNPAQATKQPRNR 190

Query: 168 TEGIRPWTKEDMQQ-FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226
               R  +  + Q  F+S        +      L +G R  D C      + +++  I  
Sbjct: 191 VNRQR-LSLPEWQAIFESVSRRQPYLKCGMLLALVTGQRLGDICNLKFSDIWDDMLHITQ 249

Query: 227 QKTGTIITVELP---DGFMKLLAMTPIGKETFFIN-------------NDKQKMNATQFS 270
           +KTG+ + + L    D     L           ++             N   +++A   +
Sbjct: 250 EKTGSKLAIPLNLKCDALNITLREVISQCRDAVVSKYLVHYRHTTSQANRGDQVSANTLT 309

Query: 271 IWFKAKATKAGVNK------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
             FK    K G+        + H  R  S  +  + G    +L    G K+    + Y
Sbjct: 310 TAFKKAREKCGIKWEQGTAPTFHEQRSLSERLYREQGLDTQKL---LGHKSRKMTDRY 364


>gi|218528294|ref|YP_002419110.1| integrase family protein [Methylobacterium chloromethanicum CM4]
 gi|218520597|gb|ACK81182.1| integrase family protein [Methylobacterium chloromethanicum CM4]
          Length = 509

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 56/308 (18%), Positives = 100/308 (32%), Gaps = 40/308 (12%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD 110
           + G  PK    N P      L    ++Y   A    LA ++R  +      +    G  D
Sbjct: 176 MAGRFPKAPA-NKPAAVVLPLDEWFAKY---ATASKLAASTRKRWRPALATLEASVGHDD 231

Query: 111 YRKITTKHIRSGVESRKHTPSSAIQF----LTSMRVLFKWAVRQEYVAINPCLS--VERP 164
             ++T+++I   V++               L S + LF W   +  +A+NPC    V+  
Sbjct: 232 LARVTSENIADWVDALATEGRGDKTIRDVYLASAKALFGWMQGKRKIAVNPCAGLRVKVV 291

Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE----------FLLYSGLRCSDSCRAGV 214
           +      R +T+ ++           + RL+ E             YSG R  +  +   
Sbjct: 292 EGPVLRERFFTEAEISTILEASLASQRGRLSAEHAAARRWVPWLCTYSGARVGEVTQLRR 351

Query: 215 QHLQ--NNIFSIK------TQKTGTIITVELPDGFMK---LLAMTPIGKETFFINNDKQK 263
           + ++  + +   +      T KT     V +    ++   L  +    KE FF     + 
Sbjct: 352 EDIRFEDGVRYFRITPEAGTVKTKRFRDVPIHPHLIEMGFLDYVETRSKELFFDKARGRG 411

Query: 264 MN-----ATQFSIWFKAKATKAGVNKSA----HGVRKFSATISADAGATAHELMATYGWK 314
            +     + +      A   K G+        HG R    T     G     L A  G  
Sbjct: 412 GSDANPLSKKVGERLAAWVRKLGITDVGMDPNHGWRHSFKTRGRRGGMRDSVLDAIQGHA 471

Query: 315 TVDQAETY 322
              +   Y
Sbjct: 472 PDTEGRRY 479


>gi|99031762|pdb|2A3V|A Chain A, Structural Basis For Broad Dna-Specificity In Integron
           Recombination
 gi|99031763|pdb|2A3V|B Chain B, Structural Basis For Broad Dna-Specificity In Integron
           Recombination
 gi|99031764|pdb|2A3V|C Chain C, Structural Basis For Broad Dna-Specificity In Integron
           Recombination
 gi|99031765|pdb|2A3V|D Chain D, Structural Basis For Broad Dna-Specificity In Integron
           Recombination
          Length = 320

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 43/294 (14%), Positives = 88/294 (29%), Gaps = 57/294 (19%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWA 147
           A  +  ++  +  + I          +  K +   +         A +  +       + 
Sbjct: 19  AKKTIEAYLHWITRYIHFHNKKHPSLMGDKEVEEFLTYLAVQGKVATKTQSLALNSLSFL 78

Query: 148 VRQEYVAINP-CLSVE--RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGL 204
            ++  +   P  L +   R + + +     T++++++         + +L  + L  SGL
Sbjct: 79  YKE--ILKTPLSLEIRFQRSQLERKLPVVLTRDEIRRLLEIVDP--KHQLPIKLLYGSGL 134

Query: 205 RCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLAMTPIGKETFFINN--- 259
           R  +  R  VQ +  +  +I+    K G   TV L       L       + ++  +   
Sbjct: 135 RLMECMRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHLKEQIALAKRYYDRDLHQ 194

Query: 260 -------------------------------------------DKQKMNATQFSIWFKAK 276
                                                       +  MN T      +  
Sbjct: 195 KNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVMRRHHMNETVLQKAVRRS 254

Query: 277 ATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           A +AG+ K+   H +R   AT   + GA    +    G   V   + YT   DR
Sbjct: 255 AQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHVLDR 308


>gi|29028384|gb|AAO64735.1| integrase [Enterobacteria phage P2]
          Length = 337

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 42/207 (20%), Positives = 78/207 (37%), Gaps = 10/207 (4%)

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYV-AINPCLSVERPKRKTEGIRPWTKEDM 179
           +   S+   PSS  + LT +  +F   +  E     +P    +R K +       T+E++
Sbjct: 111 ATRRSQGIKPSSINRDLTCISGMFTALIEAELFFGEHPIRGTKRLKEEKPETGYLTQEEI 170

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239
               +    G   ++A    L +G R  ++ R   +++ +N  +    KT    TV + +
Sbjct: 171 ALLLAALD-GDNKKIAI-LCLSTGARWGEAARLKAENIIHNRVTFVKTKTNKPRTVPISE 228

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISAD 299
              K++A    G    F + D  +   T      KA      + ++ H +R   AT    
Sbjct: 229 AVAKMIADNKRG--FLFPDADYPRFRRT-----MKAIKPDLPMGQATHALRHSFATHFMI 281

Query: 300 AGATAHELMATYGWKTVDQAETYTKGA 326
            G +   L    G   ++Q   Y   A
Sbjct: 282 NGGSIITLQRILGHTRIEQTMVYAHFA 308


>gi|307691997|ref|ZP_07634234.1| Phage integrase [Ruminococcaceae bacterium D16]
          Length = 409

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 47/316 (14%), Positives = 97/316 (30%), Gaps = 40/316 (12%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDF 109
           L  +      I     +  T+      + ++     +  N+  ++E+  +  I+   G  
Sbjct: 52  LAKAIRDNRGIPVNHNEEYTVAEWCRLWFETYSKPVIRPNTAKTYENMIENHIVPAIGGV 111

Query: 110 DYRKITTKHIRSGVESRKHTPS---------------SAIQFLTSMRVLFKWAVRQEYVA 154
             +++T   I+      K +                 +  +    +    K AV++  + 
Sbjct: 112 KLKRLTAIQIQKMYNDSKTSGRVQRFERKTDTALSGSTVRRIHMVLSSALKQAVKERIIP 171

Query: 155 INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGV 214
            NPC +   P ++ + +     E +  + S   +       F   L SGLR  +      
Sbjct: 172 YNPCDNCRIPPKEKKEMTIIPPEKLGVYLSEAEKYG-VLPMFYLELSSGLRRGELLALRW 230

Query: 215 QHLQ---------------NNIFSIKTQKTGTIIT-VELPDGFMKLL---AMTPIGKETF 255
             L                +    +   KT   +  V L    + LL             
Sbjct: 231 DDLNVKDRILSVSKQVTRIDGELVVTEPKTKNSVRKVALSQQAVALLVQEHEQHPDSPIL 290

Query: 256 FINND-KQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYG 312
           F +       +    S   +    KAG+ +    H +R   AT++  +G     L +  G
Sbjct: 291 FPSPRTGGYWSPDAVSRINRKLLAKAGIEERVRFHDLRHTFATMALSSGVDVKTLSSMLG 350

Query: 313 WKTVD-QAETYTKGAD 327
             +     +TYT   +
Sbjct: 351 HYSAGFTLDTYTHITN 366


>gi|229120912|ref|ZP_04250154.1| Site-specific recombinase, phage integrase [Bacillus cereus
           95/8201]
 gi|228662572|gb|EEL18170.1| Site-specific recombinase, phage integrase [Bacillus cereus
           95/8201]
          Length = 384

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 43/325 (13%), Positives = 93/325 (28%), Gaps = 46/325 (14%)

Query: 49  SALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD 108
             +       +   S   K  +++ +   +  S    +L   S   F   F+ I      
Sbjct: 32  KEIVKKRQPHKRKTSKISKEDSVERVFERFIDSKVKQNLRPKSLNQFLLMFNSIKAFHET 91

Query: 109 FD-----YRKITTKHIRSG----------VESRKHTPSS----------AIQFLTSMRVL 143
            +        ITT  I              +   + P S              +  ++  
Sbjct: 92  QNAQTFYMTDITTNFISDWVYWLKNEYVRFDGHAYVPESSQTIGLADETISSRIKRLKTF 151

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-------EGSQPRLAF 196
             W +RQE ++ NP    E  ++    I   + ++++              +  +  +  
Sbjct: 152 INWCLRQEIISKNPFNKFEGFRKDNTQIDILSVDELKSLLKVAKSYSNKSFKHFRDYVLL 211

Query: 197 EFLLYSGLRCSDSCRAGVQHLQ----NNIFSIKTQKTGTIITVELPDG--------FMKL 244
             L+    R +++       +       I      K+    TV L +           + 
Sbjct: 212 HLLVDGMFRITEALLLSPSDIDHTNRAVIIQSNNAKSRKTRTVPLSNKTYRLLMQLLEEN 271

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGA 302
            A      +  F++   + ++        +  A +A + K    H +R  +AT    +  
Sbjct: 272 EAFEDDVDDLIFLSLSGRMLSKNNVLRDMRKYAIEANIKKRFYLHLIRHSAATHYLSSSG 331

Query: 303 TAHELMATYGWKTVDQAETYTKGAD 327
               L    G   +     Y+  AD
Sbjct: 332 DVESLRKILGHADLRTVLIYSHLAD 356


>gi|187736147|ref|YP_001878259.1| integrase family protein [Akkermansia muciniphila ATCC BAA-835]
 gi|187426199|gb|ACD05478.1| integrase family protein [Akkermansia muciniphila ATCC BAA-835]
          Length = 366

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 38/295 (12%), Positives = 102/295 (34%), Gaps = 22/295 (7%)

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
           + +  +      E  +S         +     S   ++ + + + ++  +    +     
Sbjct: 65  KHQTVSFGTAAVECLRSK--SHRRPRTLTDIRSIIHKLKKSNPELEHTSLRNLSVEECQN 122

Query: 125 SRKHTPSSAIQFLTS---MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
              +T +++ Q   +   +  +F ++V++ +   NP L V+ P  + + I   T +++ Q
Sbjct: 123 ILMNTFTTSRQRHKARLILSGIFSFSVKRGWCDENPILRVDTPFLQEQEIPALTLKEITQ 182

Query: 182 FKSFWSEGSQPRLA--FEFLLYSGLRCSDSCRAGVQHL--QNNIFSI--KTQKTGTIITV 235
                 E      A     ++++G+R  +  R   +++  ++    +  K  KTG    V
Sbjct: 183 LLKAAMEEFDGSCAAGAALMIFAGIRPQEVERLLWENIALRDGCIILNSKHTKTGGARHV 242

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS-----AHGVR 290
            +     K L       +          +    ++I ++    KAG            +R
Sbjct: 243 TILPVLAKWLKFCRDRTKP----GPGTPICPKGWTIKWRKIRKKAGWGGRKKSWVPDCLR 298

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345
              A+  A      + L    G ++       T+  +   +  + + R  ++  +
Sbjct: 299 HTYASYHAKHFKDYNLLQMEMGHRSSSL--LRTRYLNMKGISPQTATRFWALTPA 351


>gi|212499734|ref|YP_002308542.1| integrase [Bacteriophage APSE-2]
 gi|238898725|ref|YP_002924406.1| APSE-2 prophage; integrase [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|211731703|gb|ACJ10191.1| integrase [Bacteriophage APSE-2]
 gi|229466484|gb|ACQ68258.1| APSE-2 prophage; integrase [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 381

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 38/213 (17%), Positives = 78/213 (36%), Gaps = 24/213 (11%)

Query: 131 SSAIQFLTSMRVLFKWA-VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
           ++  + L  ++ + + A    +++  +P   ++ P  + + IR    ++ ++  +   E 
Sbjct: 144 ATKAKHLALLKSMMRSAERDWKWIEKSPV--IKVPSAREKRIRWLEPDEAERLINECPEP 201

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGFMKLL 245
              R   EF L +GLR S+        +           +  K+G  I V L D    +L
Sbjct: 202 L--RSTVEFALATGLRRSNIINLAWSQIDMQRKVAWIEPENSKSGKAIGVALNDTACCIL 259

Query: 246 AMTPIGKETFFI-------------NNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRK 291
                  + +                N  +KM     + W +A   +AG+ N   H +R 
Sbjct: 260 TRQLGNHQKWVFVHTMSAKRSDGSQTNSIRKMRVDSNTAW-RAALKRAGIENFRFHDLRH 318

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK 324
             A+    +G     L    GW++++    Y  
Sbjct: 319 TWASWLIQSGVPLSVLQEMGGWESIEMVRRYAH 351


>gi|113460570|ref|YP_718634.1| phage integrase [Haemophilus somnus 129PT]
 gi|112822613|gb|ABI24702.1| phage integrase [Haemophilus somnus 129PT]
          Length = 374

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 46/289 (15%), Positives = 96/289 (33%), Gaps = 41/289 (14%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVES--- 125
           T +     Y++      +  N+  + E+  + +I+   GD     IT   I         
Sbjct: 58  TFREFFELYKRDKK-PRIRENTWRTKEAIVNSKIMPYIGDLLMIDITNVTIIQWQNELMK 116

Query: 126 ------RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV-ERPKRKTEGIRPWTKED 178
                 R ++P+        +  +   A R   +  N    V    +++ + +  WT+E+
Sbjct: 117 VKDDRGRNYSPTYLRSIHAQLSSILNHACRYYNLKTNVARDVGTMGEKEADEMSFWTQEE 176

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG----------------VQHLQNNIF 222
            ++F +   +  Q   AFE L + GLR  +                     +Q +     
Sbjct: 177 YEKFIAAIKDKPQSFYAFEILYWCGLRMGELLALTKEKFNFNTNTLKVDESLQKIDGENI 236

Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIG------KETFFINNDKQKMNATQFSIWFKAK 276
               +   +I  + +PD   + +     G      K+  F        + +         
Sbjct: 237 ITPPKTKKSIRKIVMPDFLAEEIQNYLDGFYKLKPKDLIFT------FSKSYLHHEMDRG 290

Query: 277 ATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           A KA V +   H +R    ++  + G +A  +    G +++D    Y  
Sbjct: 291 AKKANVKRIRVHDLRHSHVSLLIELGFSATAIADRVGHESIDITYRYAH 339


>gi|317154905|ref|YP_004122953.1| integrase family protein [Desulfovibrio aespoeensis Aspo-2]
 gi|316945156|gb|ADU64207.1| integrase family protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 336

 Score = 90.5 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 38/265 (14%), Positives = 77/265 (29%), Gaps = 21/265 (7%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF-DYRKITTKHIRSGVESRKH--TPSS 132
            EY + +                F+++     +      +T       +  R    + ++
Sbjct: 61  VEYLEYSKQRHTPKTYLEEKVPAFNRLFEAIPNTTPVTDLTVTACLKILTLRAQDVSGNA 120

Query: 133 AIQFLTSMRVLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           A +   ++   + W  +       NP ++V+R     +      + D  +         +
Sbjct: 121 ANKDRKNLAAAWTWGTKYLGMPRDNPFVAVDRFPSDQQARYMPPESDFWKVYEV--ARPK 178

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGT--------IITVELPDGF 241
            ++    LL++G R S+  R     +     +  + T+K            +T  L D  
Sbjct: 179 DQVFLLTLLHTGARRSELLRLTWDDINLDTGMIRLWTRKRANGSLEFDWLWLTSRLHDAL 238

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADA 300
            K         E  F  +D             K    +AGV   + HG+R   A+  A  
Sbjct: 239 QKHYEQ--RISEHVFCRSDGTPY--KWRQHLMKILCKRAGVKHFTFHGIRHLLASKMAQK 294

Query: 301 GATAHELMATYGWKTVDQAETYTKG 325
           G     +              Y   
Sbjct: 295 GVDIPNIRDILRHTNSMTTTRYIHR 319


>gi|254436771|ref|ZP_05050265.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
 gi|198252217|gb|EDY76531.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
          Length = 290

 Score = 90.5 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 42/255 (16%), Positives = 81/255 (31%), Gaps = 26/255 (10%)

Query: 93  ISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKHT---PSSAIQFLTSMRVLFKWA 147
            + +++   +   +G         T   +R+       T   P +    + ++R LF   
Sbjct: 20  KAQKAHIRAVKHFAGFLKRSPDTATPDDLRAYQLHMTDTEVTPPTFNARIMALRFLFGTT 79

Query: 148 VRQEYVAINPCLSVERP----KRKTEGIRPWTKEDMQQFKSFWS-EGSQPRLAFEFLLYS 202
             +          ++R      +        + E++ +  +     G + R A      +
Sbjct: 80  CDR--------KGMKRYMQFCTQPRRLPTVLSIEEVAEVIAAAPGPGLKYRAALSISYGA 131

Query: 203 GLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLLA---MTPIGKETFFI 257
           GLR S+ C   V  + ++     +   K G    V L    + LL             F 
Sbjct: 132 GLRASEVCSLKVSDIDSDRMLIHVDEGKGGKDRKVMLSPDLLDLLRDYWREAQPAGWLFP 191

Query: 258 NNDK-QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWK 314
              K   ++A Q S  F +     G+    + H +R   AT   +A      +    G  
Sbjct: 192 GKPKINPISARQLSRAFNSAKHVVGISKPATLHTLRHSFATHLLEANIDVRVIQVLLGHA 251

Query: 315 TVDQAETYTKGADRI 329
            +     YT  A +I
Sbjct: 252 KLSTTARYTHVATKI 266


>gi|195939942|ref|ZP_03085324.1| putative integrase [Escherichia coli O157:H7 str. EC4024]
          Length = 291

 Score = 90.5 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 36/270 (13%), Positives = 78/270 (28%), Gaps = 26/270 (9%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---- 126
           L  LI+ + +     +L+       +   + I  + GD    +       +  E R    
Sbjct: 17  LSELIARWFEMYG-KTLSSG--AERKVKLEAICSRLGDPFASQFDKNMFATYRERRLSGE 73

Query: 127 -------KHTPSSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKED 178
                  K + ++  +  + +  +F    R   +   NP   + + + + + +     ++
Sbjct: 74  WNPKGKKKLSEATVNREQSYLHAVFAELKRLGEWSGENPLTGIRKFREEEKELAFLYVDE 133

Query: 179 MQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
           +++      E     L       L +G R S++       +     +    K     TV 
Sbjct: 134 IERLLIACDESRNKDLGVVVRIGLATGARWSEAEGLKQSQVLPGRITFVKTKGKKNRTVP 193

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATI 296
           +      +L   P  +   F            F    K    +    +  H +R   A+ 
Sbjct: 194 ISPQLQAML---PKKRGALF------SPCYEAFDAAIKRAKIELPDGQLTHVLRHTFASH 244

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326
               G     L    G   +     Y   A
Sbjct: 245 FMMRGGNILVLQKILGHSDIKMTMRYAHFA 274


>gi|167836446|ref|ZP_02463329.1| probable site-specific integrase/recombinase [Burkholderia
           thailandensis MSMB43]
          Length = 227

 Score = 90.5 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 81/222 (36%), Gaps = 17/222 (7%)

Query: 113 KITTKHIRSGVESRKH--TPSSAIQFLTSMRVLFKWAVRQEY---VAINPCLSVERPKRK 167
           K+   H+    + R     PS+ I+ L ++  +++ A+  E+   + +NP   + RPK  
Sbjct: 2   KLDKPHLVEWRDRRIGEVAPSTVIRELDAISAVYRLAID-EWAVGLTVNPTKGLRRPKLP 60

Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRL-AFEFLLYSGLRCSDSCRAGVQHLQNNI--FSI 224
                     D ++  +   + ++    A    + + +R  +  +   +H+  +     +
Sbjct: 61  PPRDVRLAIGDDEKLIASAIDYNREIAPAIVLAIETAMRQGEIAKLRWEHIDLDARTVLL 120

Query: 225 KTQKTGTIITVELPDGFMKLLA-MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
              K GT   V L    ++ L    P  +   F      K+  +     F     + G+ 
Sbjct: 121 PMTKNGTPRKVPLSSRAIEALTWCPPPHRGRVF------KLTQSAMKYAFSRVREECGLG 174

Query: 284 K-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
               H +R  + +   + G    E+    G K +   + YT 
Sbjct: 175 TIHFHDLRHEATSRLFEKGLNVLEVATITGHKNLKHLQRYTH 216


>gi|257899112|ref|ZP_05678765.1| phage integrase [Enterococcus faecium Com15]
 gi|257837024|gb|EEV62098.1| phage integrase [Enterococcus faecium Com15]
          Length = 379

 Score = 90.5 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 54/373 (14%), Positives = 120/373 (32%), Gaps = 47/373 (12%)

Query: 16  TRHGKIIYY---FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
            + G    Y   ++K  G+  ++      T   A  +A        + +   RK    L 
Sbjct: 5   VKRGNSWQYEISYKKDDGKYTKIRKSGFKTKGEAKDAANELEYNLNKGLKGDRKNLL-LS 63

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HTP 130
               ++ +    G+++  +   +E     I +         +     +  +      H  
Sbjct: 64  DYFEDWMQLYKEGTVSPITYRKYEDTLMNIKKYMPAVLISDLDRVGYQRFLNKYAKDHVK 123

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPC-LSVERPK--RKTEGIRPWTKEDMQQFKSFWS 187
           S+ I+F   +R   K AV +  +  +P   +V + K   K +  +    +  +       
Sbjct: 124 STVIKFNNHIRASLKDAVEEGLIPFDPTRKAVIKGKDSLKPKEDKYLDYDQFKSLMKLVE 183

Query: 188 EGSQPR----LAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK---------TQKTGTI 232
           E    +    +       +G+R ++      + +   + I +I            KT   
Sbjct: 184 ENLSAQYSSPMLVLVAGATGMRFAELLGLTWEDIDFEDQIITINKTWNYKLNEWGKTKNE 243

Query: 233 I----------TVELPD-------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKA 275
                      T++L                +       FF   +   +++   S + + 
Sbjct: 244 TSNRKISIDKHTIDLLKKFKINQKELFDNFEVKNPHNFVFFNLKNGL-VSSNAVSKYLRK 302

Query: 276 KATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLG 332
           K  + G+ K  + HG+R   A+I    G     +    G  +++    TY        L 
Sbjct: 303 KLKELGIEKQFTLHGLRHTHASILLYQGVNILSVSKRLGHSSLETTMSTYLHIV--RELE 360

Query: 333 IKNSRRISSVVDS 345
            ++  +I++V DS
Sbjct: 361 DQDKEKINAVFDS 373


>gi|254563094|ref|YP_003070189.1| integrase [Methylobacterium extorquens DM4]
 gi|254270372|emb|CAX26368.1| putative integrase [Methylobacterium extorquens DM4]
          Length = 337

 Score = 90.5 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 42/304 (13%), Positives = 89/304 (29%), Gaps = 27/304 (8%)

Query: 38  PHESTFIPAYMSALTGSTPKREYINSPRKKPT------TLKWLISEYRKSAHWGSL-AVN 90
           P   +F     + L     +R    +            T+  L++ Y          A  
Sbjct: 23  PISKSFTTKADALLWARETERSIDRAELPVTIKDLQRITVADLLARYEAEVTTKKRGADR 82

Query: 91  SRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQ 150
            R          +          +     R   +  K    + ++   ++        R+
Sbjct: 83  ERYKLRVIRSHPLTSLSLAKLTAVAVSRYRD--DRLKVVQGATVRRELAILQHCFEVARK 140

Query: 151 EY---VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP----RLAFEFLLYSG 203
           E+   +  NP   +  P+      +    E  Q+     + GS      R   E  + +G
Sbjct: 141 EWGTPLPTNPVHGITLPEPSRAREQRLEAEAGQKL--HAAIGSVHAWYLRPLMELAIETG 198

Query: 204 LRCSDSCRAGVQHLQNN--IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK 261
           +R  +      +H+        +   K G   TV L    +++L   P            
Sbjct: 199 MRRGELLSLQWRHVSLGKRTAHLPITKNGHARTVALTPKAIEILKALPQTDARVL----- 253

Query: 262 QKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
             ++     + ++    +AG+     H +R  + +   +AG +  E+    G +      
Sbjct: 254 -PVSGNAVRLAWERLRKRAGLPGLRFHDLRHEAVSRFFEAGLSIPEVALMSGHRDTRMLM 312

Query: 321 TYTK 324
            YT 
Sbjct: 313 RYTH 316


>gi|253755988|ref|YP_003029128.1| phage integrase [Streptococcus suis BM407]
 gi|251818452|emb|CAZ56281.1| putative phage integrase [Streptococcus suis BM407]
          Length = 380

 Score = 90.5 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 46/302 (15%), Positives = 97/302 (32%), Gaps = 44/302 (14%)

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
           +    T + +   + +       A             I+   G     KI+    +   +
Sbjct: 62  KPDRITFEEVYKIWLEHYKNTVKASTYARQKAQADLHIVPVFGACYVDKISLPMCQKQAQ 121

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP-------WTKE 177
                      F+   +++  +AV   Y+  NP   + +P++ +E           +++E
Sbjct: 122 EWFKGYKKYANFIGMTKMVLDFAVNLGYIHDNPMKKIIKPRKSSEVDEEEKKKENFYSRE 181

Query: 178 DMQQFKSFWSEGSQPRLA--FEFLLYSGLRCSDSCRAGVQHLQ----------------N 219
           D+Q+F    ++  +  +A  F  L ++G+R S+      + L                 N
Sbjct: 182 DLQKFLDCVAKEDKEEIACIFRLLAFTGMRKSEVLALRWKDLDLFTSRLSVSQIVAYGEN 241

Query: 220 NIFSIKTQKTGT--------IITVELPDGFMKLL-------AMTPIGKETFFINNDKQKM 264
           N    +T KT           ITV +   + K          + P   +  F        
Sbjct: 242 NSIVYQTPKTKKSKRTITLDPITVSILKKWEKTRQFLNFPQRVKPT--DLVFPAETGNAH 299

Query: 265 NATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TY 322
           +    +   +    K  +   + HG R    ++  +AGA+  E+    G + +      Y
Sbjct: 300 SFDYINYNLRCILKKYDLPYITPHGFRHTHCSLLFEAGASIKEVQERLGHEDIKTTMNIY 359

Query: 323 TK 324
             
Sbjct: 360 AH 361


>gi|254458463|ref|ZP_05071888.1| phage integrase [Campylobacterales bacterium GD 1]
 gi|207084771|gb|EDZ62058.1| phage integrase [Campylobacterales bacterium GD 1]
          Length = 360

 Score = 90.5 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 34/254 (13%), Positives = 80/254 (31%), Gaps = 18/254 (7%)

Query: 81  SAHWGSLAVNSRISFESY--FDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLT 138
              +  L  + +        ++++    G+     I    ++  + S     SS   +L 
Sbjct: 67  HKKFLKLHESDKSFHNRIGVYNRVNEFFGNMFVSDIKVLTVKEYLSSLNLRNSSKKDYLG 126

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEF 198
            +R     A+  E +  N    +   +     I+P++ +++       SEG   R     
Sbjct: 127 CVRGTLDIALDDEEIDRNVAFGIRFKREAKAPIQPFSIDEVTLMLEK-SEG-MFRNYIGI 184

Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQ---------KT-GTIITVELPDGFMKLLAMT 248
            L SGLR  +        +  +   ++           KT G++  + + +     L   
Sbjct: 185 SLNSGLRSGEVLGLMHSDILEDRICVRRSVSQGRVTSPKTLGSVRDIPMLEALRPYLESQ 244

Query: 249 PIGKETFFINNDKQKMNATQ--FSIWFKAKATKAGVNKS-AHGVRKFSATISADAGA-TA 304
               E+ ++ +  +        F   +        +     +  R    T   ++G    
Sbjct: 245 KKLSESLYLFDFDKTFIKDASFFKRRWHQLVKDCNMEYRKLYTTRHTFITAMLNSGKFKI 304

Query: 305 HELMATYGWKTVDQ 318
            E+ A  G  + + 
Sbjct: 305 MEIAAIVGHTSPEM 318


>gi|307943606|ref|ZP_07658950.1| putative phage integrase [Roseibium sp. TrichSKD4]
 gi|307773236|gb|EFO32453.1| putative phage integrase [Roseibium sp. TrichSKD4]
          Length = 414

 Score = 90.5 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 60/336 (17%), Positives = 109/336 (32%), Gaps = 23/336 (6%)

Query: 9   PFVTKERTRHGKIIYY--FRKGHGRR---IRLPYPHESTFIPAYMSALTGSTPKREYINS 63
           P     R   G   Y+  FR G  +R   I L      +   A   AL  +  +   +  
Sbjct: 40  PGFGVYRNATGPARYFVHFRVGTRQRKKMIGLVTEMSLSDARAEAGALKVAARQGRDVIQ 99

Query: 64  PRKKP----TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119
            RK+      TL      +  +      +  +   +   +   + K        I+   I
Sbjct: 100 ERKEELQRGITLSEAYLAFLDALERKGGSPRTVKGYSQNWRTRLSKHSSTPLGDISKADI 159

Query: 120 RSGVESRKH-TPSSAIQFLTSMRVLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKE 177
           R+  +      P++A Q L   R ++  A+R  + +  NP  +V++ + + E  R W + 
Sbjct: 160 RAWHKKWGECGPTAANQSLRLFRAIYNHAIRTSDGLPPNPSNAVDQFRERGE--RKWLEW 217

Query: 178 DM---QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII- 233
           +            E    R  + FLLYSGLR SD+       +        + K G +  
Sbjct: 218 EALPAWMADVERLENPIRRALWPFLLYSGLRRSDAASIRWDEVGETSIHRPSPKGGRLRA 277

Query: 234 -TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRK 291
             + L     ++L          F  +       + +         +  +   S H +R+
Sbjct: 278 FDLPLSSKLSEILEDAREAHTLLFPMSPYVFPANSAYGHV--ETLKEKTIPHVSPHMLRR 335

Query: 292 FSATISADAGATAHELMATYGWKTV--DQAETYTKG 325
             AT   +AG   +             D    Y + 
Sbjct: 336 TFATACVEAGLDPYTTKRLLNHTVARGDVTALYVRQ 371


>gi|312882545|ref|ZP_07742286.1| integrase [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309369945|gb|EFP97456.1| integrase [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 342

 Score = 90.5 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 52/319 (16%), Positives = 101/319 (31%), Gaps = 29/319 (9%)

Query: 13  KERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           +   R+GK    FR+   ++             AY   +  +   +E++  P  K   L 
Sbjct: 15  RPSGRNGK---RFRRKFDKK---------AEALAYEKHILSTHHNKEWLGLPVDKRN-LS 61

Query: 73  WLISEY-RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG---VESRKH 128
            LI  +  KS         +  ++    + I R+ GD     I    I +      ++  
Sbjct: 62  ELIDIWWIKSGQLK----RTATNYRQKLELICRELGDPTVNNIDATLINNWQLERMAKGQ 117

Query: 129 TPSSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
             ++  +  + +  +F   +    +   +P   +++P  +   +   T    Q    +  
Sbjct: 118 KANTVRRLSSCLSNVFSVLIETGDFTGAHPLRGLKKPTPEKSEMTYLTLMQAQCLLDYLK 177

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
              +     E  L +G R  ++      +L          KTG   TV +       +  
Sbjct: 178 NDWELLKIVEVSLATGSRWRETVTLKSSNLSPYRIRFTNTKTGKPRTVPISKQLYDDIYP 237

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHEL 307
              GK     + D QK     F+             +  H +R   A+     G     L
Sbjct: 238 EIGGK---LFSEDPQKRLVKVFNELKFDLPK----GQKVHVLRHTFASHFIMNGGDILTL 290

Query: 308 MATYGWKTVDQAETYTKGA 326
               G  +++Q  TY   A
Sbjct: 291 KEILGHCSINQTMTYAHLA 309


>gi|327197611|ref|YP_004301302.1| gp26 [Brochothrix phage NF5]
 gi|296245434|gb|ADH03048.1| gp26 [Brochothrix phage NF5]
          Length = 397

 Score = 90.5 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 43/311 (13%), Positives = 89/311 (28%), Gaps = 41/311 (13%)

Query: 70  TLKWLISEYR----KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
           T  W + EY     K+   G +   S   + +    +    G    +K+     +  +  
Sbjct: 81  TKDWKLVEYMEMFFKTFKKGKVNAGSEKLYLNMIKDVKTHFGKLLLKKLDPLKYQLFINK 140

Query: 126 RKHTPSSAI--QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP--WTKEDMQQ 181
                +++        ++V    AV+   +  NPC   E         +       D+ +
Sbjct: 141 LCEDRATSTVLSMHKRLKVAINHAVKTGVLTRNPCTGTEIAGNDKNARKTKFLNTSDILK 200

Query: 182 FKSFWSEGSQPR-LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT------ 234
            ++       PR  A    +++G R ++        +  +   I   KT  I        
Sbjct: 201 IENVVKLEWHPRNCAIVIAIHTGARYAEIIGLTWDDIDFDNSLITINKTWDIHFSHDFST 260

Query: 235 ---------VELPDGFMKLLAMTPIGKETFFINND-------------KQKMNATQFSIW 272
                    + + D     L      ++  F+                   +     +++
Sbjct: 261 TKNESSNRIIYIDDTLKNYLKTYRTKQKELFLLKGISNKLNLVVSQEETHPLLNKSINVY 320

Query: 273 FKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIR 330
            K    +  V K + H +R        +AG     +    G   +      YT  +    
Sbjct: 321 LKNTCDQLDVPKITLHALRHSHTVQLIEAGVDIKYISLRLGHADISTTLSIYTHIS--KE 378

Query: 331 LGIKNSRRISS 341
           L   N  RI+ 
Sbjct: 379 LETLNRARINE 389


>gi|172035637|ref|YP_001802138.1| hypothetical protein cce_0721 [Cyanothece sp. ATCC 51142]
 gi|171697091|gb|ACB50072.1| hypothetical protein cce_0721 [Cyanothece sp. ATCC 51142]
          Length = 402

 Score = 90.5 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 43/290 (14%), Positives = 99/290 (34%), Gaps = 41/290 (14%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
           L  L ++Y     + S +   + +    + +I ++      + I           + + P
Sbjct: 106 LSDLWNKYT---EFKS-SQVEKTTLIRDYGKIAKRIAKLPTQDINEAVAIRDYLLKVYAP 161

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINP----CLSVERPKRKTEGIRPWTKED----MQQF 182
            +A + L  +     WA+R + +  NP       ++  K      +P+T+++    +Q F
Sbjct: 162 ETAKRTLKQLNACCNWAMRSKLITSNPFDGMASDIKSKKTSKTSRKPFTQDERDVIIQAF 221

Query: 183 KS--FWSEGSQPRLAF-----EFLLYSGLRCSDSCRAGVQHLQNNIFSI----------- 224
           +   + S+ S+   ++     +FL  +G R  ++     +H++ N  +            
Sbjct: 222 EENIYCSKYSRVNHSYYAPYVKFLFLTGCRPEEAIALQWKHIEKNYINFCEAVATDLRIR 281

Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIG----KETFFINNDKQKMNATQFSIWFKAKATKA 280
           K+ KT       +       LA          +  F +    +++A  F         +A
Sbjct: 282 KSTKTHESRHFPINRQLQAFLAEIKPENASNDDLVFPSTTGIEIDAHNFLNRIWKPVVEA 341

Query: 281 GVN-------KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
            V           +  R    T++ + G T  ++    G       + Y 
Sbjct: 342 LVKEGKLKQYLPQYNCRHTFITMALEKGVTVVQVAKWVGNSPEIIMKHYA 391


>gi|91790655|ref|YP_551607.1| phage integrase [Polaromonas sp. JS666]
 gi|91699880|gb|ABE46709.1| phage integrase [Polaromonas sp. JS666]
          Length = 291

 Score = 90.5 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 41/269 (15%), Positives = 95/269 (35%), Gaps = 23/269 (8%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129
           L      +     LA  ++  +     ++ R         ++ + + + +    + RK +
Sbjct: 4   LRQRMLDAMTVRGLAERTQECYAEAVSRMARHY-HRSPDLLSPQEVEAYLLHLVKDRKLS 62

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            SS     ++ R LF+  + ++    +  L     K   +      +E++ +  +  +  
Sbjct: 63  YSSVNHAASASRFLFETVLGRK---SDEHLRPPMAKVPQKQPHLLAREEIARLFACCAHP 119

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKT--QKTGTIITVELPDGFMKLL 245
           +  R+A + L  +GLR S+  R  V  +    +   ++    K G      L    + LL
Sbjct: 120 AY-RMALQTLYATGLRVSEVGRLRVSDIDSAADRMCVRVNAGKGGADRYSILSPSLLALL 178

Query: 246 AM-----TPIGKETFFINNDK---QKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSAT 295
            +      P      ++  +    + +        ++A    AG+ KS   H +R   AT
Sbjct: 179 RLYCQTYAPQRNPGKWLFANGTGERGVGIESLQRAYQAARHCAGITKSGGTHTLRHCFAT 238

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTK 324
              ++G   + +    G + +     Y  
Sbjct: 239 HLLESGVDLYTISRLLGHRHISTTSRYLH 267


>gi|120435584|ref|YP_861270.1| phage integrase family protein [Gramella forsetii KT0803]
 gi|120435708|ref|YP_861394.1| phage integrase family protein [Gramella forsetii KT0803]
 gi|117577734|emb|CAL66203.1| phage integrase family protein [Gramella forsetii KT0803]
 gi|117577858|emb|CAL66327.1| phage integrase family protein [Gramella forsetii KT0803]
          Length = 425

 Score = 90.5 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 47/302 (15%), Positives = 97/302 (32%), Gaps = 35/302 (11%)

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKSAHWGS-LAVNSRISFESYF--------DQIIR 104
           +  + +    P      +   I+ + +       L V++   +               I 
Sbjct: 98  APARSQRKEDPIVFGGAIGRAITGFLEHKRLKERLTVSTLYGYRKNLFPFLQYCNKNSIG 157

Query: 105 KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP 164
             GD D   I      + ++ RK T       + ++R   K+A +Q+ +AI+    + R 
Sbjct: 158 SMGDIDQAFIL--GYLNQLDCRKKTVVQV--TILALRSFMKYAYQQKLLAIDYSSKIPRY 213

Query: 165 KR--KTEGIRPWTKEDMQQF----KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ--H 216
           +   + +    ++KE++++          +G +      F    GLR SD  R      H
Sbjct: 214 RAVDQPKLPSTYSKEEIEKLIVSVDRSNPQGKRNYAIILFAARLGLRASDISRLKFTELH 273

Query: 217 LQNNIFSIKTQKTGTIITVELPDGFMKLL-----AMTPIGKETFFINNDKQKM----NAT 267
              +   IK  KTG  + + +       L        P  +  F     K        + 
Sbjct: 274 WDTSTIEIKQVKTGKELVLPILPDVGNALIDYLKYGRPKSESPFVFLIAKAPYAQFHTSQ 333

Query: 268 QFSIWFKAKATKAGVNKS-----AHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
             +   +    KAG++        H +R        +       +   +G K+ +    Y
Sbjct: 334 VVTHVVQRAYRKAGIDIKGRKFGPHSLRHSLGFRMLEESTALPIISEVFGHKSTESTRYY 393

Query: 323 TK 324
            +
Sbjct: 394 LR 395


>gi|300863537|ref|ZP_07108487.1| Tyrosine recombinase XerC [Oscillatoria sp. PCC 6506]
 gi|300338462|emb|CBN53629.1| Tyrosine recombinase XerC [Oscillatoria sp. PCC 6506]
          Length = 304

 Score = 90.5 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 43/279 (15%), Positives = 92/279 (32%), Gaps = 30/279 (10%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH- 128
           TL  L  E+        L+++++ S+ES    ++ + G      I+ + +   + S  H 
Sbjct: 4   TLARLAREFL---DRPGLSLSTQRSYESTLMPLLGQWGRLPIEIISRQLVLDYLRSLTHL 60

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG--------IRPWTKEDMQ 180
           + ++  +    ++ L  + V Q Y+ +NP   +++ K   E         IR  + E + 
Sbjct: 61  SITTHHRHQAIIQALLNFGVEQGYLTVNPIAGLKQRKLDPEKGECSTDAVIRYLSAEQLS 120

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV----- 235
                     +       L  +G R  +     ++ +   +   +    G  +       
Sbjct: 121 ILYELLVPDVRLHAIVRLLHRTGARIGELLTLDLEGIDLQLQKFQVMGKGKKLRWCFYSE 180

Query: 236 ---ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF------SIWFKAKATKA-GVNKS 285
               + + ++K              N   Q++    +         F  K+    G+   
Sbjct: 181 DAASIVNNYIKYYRDLGTPALFTAQNPFNQRVTRLSYQQVYCCWQSFTEKSPLLQGI--R 238

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            H +R   AT          EL A  G + +     Y K
Sbjct: 239 LHDLRHTFATE-RVGLMALEELRALMGHENIQTTLRYQK 276


>gi|298483595|ref|ZP_07001770.1| integrase [Bacteroides sp. D22]
 gi|298270165|gb|EFI11751.1| integrase [Bacteroides sp. D22]
          Length = 281

 Score = 90.5 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 49/256 (19%), Positives = 92/256 (35%), Gaps = 25/256 (9%)

Query: 108 DFDYRKITTKHIRSGVESRK----HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163
           D  + +I    I S V   K     + S+    +  +R +   A+ +  +  +P     R
Sbjct: 17  DIPFTQIDFDFIESYVYYLKVNLQLSASTTNNTIKPLRKVVMRALNKGLMHQDPFFGY-R 75

Query: 164 PKRKTEGIRPWTKEDMQQFKS---FWSEGSQPRLAFEFLLYSGLRCSDSCRAG-----VQ 215
           P+R T   +  + +++++           +  R  F F  ++GL   D           Q
Sbjct: 76  PQRITITRKWLSMDEIERLMQTDMKHESANFIRDMFLFSTFTGLAYVDLKNLRHDNIVWQ 135

Query: 216 HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM---NATQFSIW 272
                   +  QKTGT   + L D  ++L+      + T F   D +           I 
Sbjct: 136 KDGKQWIVLNRQKTGTTSYIPLLDIPLRLIEKY---RNTAFAGLDGKVFRLCTIENADIQ 192

Query: 273 FKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
            K  A  A + K    H  R   AT+    G     +  T G +++   + Y   AD  R
Sbjct: 193 LKKIAKAANIEKRLTYHMARHSYATLCLSMGVPIETISQTLGHRSISTTQIY---ADITR 249

Query: 331 LGI-KNSRRISSVVDS 345
             I ++   ++  +++
Sbjct: 250 TKINEDMTNLAERIEN 265


>gi|293392416|ref|ZP_06636738.1| phage integrase family site-specific recombinase [Serratia
           odorifera DSM 4582]
 gi|291425070|gb|EFE98277.1| phage integrase family site-specific recombinase [Serratia
           odorifera DSM 4582]
          Length = 304

 Score = 90.5 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 44/282 (15%), Positives = 87/282 (30%), Gaps = 26/282 (9%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH- 128
           T+   + +Y       +LA  +          I    G+    ++TTK + + +E     
Sbjct: 18  TVGVYLQDYLAILKKRNLAKETMRQRHLQIGYITESIGNLLLSRVTTKDLATFLEGYADQ 77

Query: 129 -TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              ++A++    +   F  A+    +  NP     R           T  + +  +   +
Sbjct: 78  GKKATAVRMRQILNDAFNEAIAAGLIKDNPVT-PTRAATSKVLRSRLTIAEYRVIRQLAA 136

Query: 188 EGSQ-PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL--------- 237
           +     +  F+  L +G R  D        + +    +   KTG  +++ L         
Sbjct: 137 DSEPWVKNLFDLALVTGQRREDLAAMKFTDIHDGHLWVTQLKTGARVSLPLSLSIPNEGL 196

Query: 238 -PDGFMKLLAMTPIGKETFFINNDKQKMNAT----QFSIWFKAKATKAGVNK-----SAH 287
             +  +     + I  +     N   K  A+      S  F     K  +       S H
Sbjct: 197 VLENVISQCRSSGIVSKYLLHTNRGAKKGASLKPGTLSKGFSGVREKTDLTWPGTEPSLH 256

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETY--TKGAD 327
            +R   +              A  G KT    + Y  T+GA+
Sbjct: 257 EIR-SLSARLYTDLYGKEVAQAIMGHKTSAMTDLYRDTRGAE 297


>gi|268609765|ref|ZP_06143492.1| integrase family protein [Ruminococcus flavefaciens FD-1]
          Length = 372

 Score = 90.5 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 45/297 (15%), Positives = 93/297 (31%), Gaps = 48/297 (16%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVE--SR 126
           T    I  +        L  +S    E   +  ++    D    K+ +  I+  +     
Sbjct: 56  TFGEYIRRWLYEVKANELKPSSLDRKEQTINYQVLPYLKDIPLTKLKSDDIQHMINDLKL 115

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG---IRPWTKEDM---- 179
           K++ S+  +   ++    ++A+ +  V+ N   +V  PK   +    I  ++ E++    
Sbjct: 116 KYSYSTVKKAYEAVNSCLRYALSKREVSENAADNVSLPKSMKKAVNDISFFSDEELGLIY 175

Query: 180 -QQFKSFWSEGSQPRLA--FEFLLYSGLRCSDSCRAGVQHLQ---------NNIFSIKTQ 227
            + FK + +     RLA    FL+ +GLR  +        +           NI  +K +
Sbjct: 176 KEAFKCYRNGKRIYRLAEIIVFLVNTGLRIGECLALKWSDIDWNTNIFRVSRNIVYVKRR 235

Query: 228 ---------------------KTGTIITVELPDGFMKLL---AMTPIGKETFFINNDKQK 263
                                K G  + V L    ++ L             F  ++  +
Sbjct: 236 DTKSMLAETGYSSLEQRSTKTKNGDRV-VPLNSAAIRALLSIRGINKNNSYIFSTSNGGR 294

Query: 264 MNATQFSIWFKAKATKAGVNKS-AHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
           +        F+A   +  +     H +R   A+     G     +    G   V   
Sbjct: 295 VYPRNIDRMFRAILNRCHIKGRGVHSLRHTFASRMFAEGVDVKTVSEVLGHSDVSIT 351


>gi|229579624|ref|YP_002838023.1| integrase family protein [Sulfolobus islandicus Y.G.57.14]
 gi|228010339|gb|ACP46101.1| integrase family protein [Sulfolobus islandicus Y.G.57.14]
          Length = 291

 Score = 90.5 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 38/250 (15%), Positives = 83/250 (33%), Gaps = 33/250 (13%)

Query: 83  HWGSLAVN--SRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSM 140
            + +      +      +   ++ + G     ++  +  +S          +   ++ ++
Sbjct: 44  DFINKDPRKVTSEDLNKWISNLLNREGKVKGDEVEKRRAKSV---------TIRYYIIAV 94

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200
           R   KW         N  +    PK + + ++   +  +Q+  +     ++ +L    LL
Sbjct: 95  RRFLKWL--------NVSVKPPIPKVRGKEVKALDESQIQKVLNTCKR-TKDKLIIRLLL 145

Query: 201 YSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDG----FMKLLAMTPIGKET 254
            +GLR ++     V+ +   NN+  ++  K G    V   D       K +    + ++ 
Sbjct: 146 DTGLRANELLSVLVKDVDLENNMIRVRNTKNGEERVVFFTDETKQLLRKYMKGKKLDEKL 205

Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWK 314
           F I                K    K  +    H +R   AT+S   G     L    G K
Sbjct: 206 FDIT-------YDALYRKLKRLGNKVEIELRPHILRHTFATLSLKRGINVITLQKLLGHK 258

Query: 315 TVDQAETYTK 324
            +   + YT 
Sbjct: 259 DIKTTQIYTH 268


>gi|218290561|ref|ZP_03494670.1| integrase family protein [Alicyclobacillus acidocaldarius LAA1]
 gi|218239464|gb|EED06660.1| integrase family protein [Alicyclobacillus acidocaldarius LAA1]
          Length = 379

 Score = 90.5 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 45/315 (14%), Positives = 103/315 (32%), Gaps = 40/315 (12%)

Query: 49  SALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSG 107
            A+     +        +   T++  +  + +      +  ++   +E      II   G
Sbjct: 42  KAMAAKLQEIVSGVYVAENNDTVETYLRNWLEDKR-SQVRPSTYRGYEWLVRVHIIPHLG 100

Query: 108 DFDYRKITTKHIRSGVESRK--HTPSSAIQFLTS---MRVLFKWAVRQEYVAINPCLSVE 162
             +   +  +H+++     +    P S    L     +      AV+   VA N   +V+
Sbjct: 101 GIELSDLRPQHLQALYRKLQSLDKPLSNRTILHIHLLLHEALDRAVKWGMVARNVADAVD 160

Query: 163 RPKRKTEGIRPWTKEDMQQFKSFWSEG-SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221
            P+ +      WT ED++ F S   E  ++   AF   + +G+R  +        +  + 
Sbjct: 161 PPRPEVRRSIVWTPEDVRAFLSANEEAEARYYAAFVLAVMTGMRKGEILGLRWSEIDWDS 220

Query: 222 ------FSIKTQKTGTIITVELPDGFMKLLAMTP------------------------IG 251
                  ++   K G I+     D   + +A++P                          
Sbjct: 221 AVVRINQTLTWTKQGPILQEPKTDRSRRSVALSPETIVALRRHHALQAQERLLYGTEYKD 280

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMAT 310
            +  F   + + ++       +     +A V +   H +R   A++    G     +   
Sbjct: 281 HDLVFARPNGEPLHPRTLDNAWYRALKRANVPRIRFHDLRHTHASLLLAQGVHPKIVSER 340

Query: 311 YGWKTVDQA-ETYTK 324
            G  T++   +TY+ 
Sbjct: 341 LGHSTINITLDTYSH 355


>gi|257879457|ref|ZP_05659110.1| conserved hypothetical protein [Enterococcus faecium 1,230,933]
 gi|323142582|ref|ZP_08077398.1| site-specific recombinase, phage integrase family
           [Phascolarctobacterium sp. YIT 12067]
 gi|257813685|gb|EEV42443.1| conserved hypothetical protein [Enterococcus faecium 1,230,933]
 gi|322413015|gb|EFY03918.1| site-specific recombinase, phage integrase family
           [Phascolarctobacterium sp. YIT 12067]
          Length = 457

 Score = 90.5 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 57/354 (16%), Positives = 101/354 (28%), Gaps = 83/354 (23%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTK----HIR 120
               T+  L+ EY       + A+++  S +S   + I    GD     +T +    + R
Sbjct: 56  PSAKTVNDLLDEYMSIYGVNTWAMSTYESRKSLIANYIRPLIGDMKLEDVTPRIMDKYYR 115

Query: 121 SGVESRK------------HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168
             +  +              TP +  +   ++R  F  AV+ E +  NP      PK + 
Sbjct: 116 DLLSVKAVSSKYVKARTEYLTPHTVREVHKTLRNAFNQAVKWELMTRNPVEHATLPKEEH 175

Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---------- 218
           +    WT E +Q+      +    RLA        LR  +        +           
Sbjct: 176 KTRDIWTAEVLQKALEACDD-DILRLAINLAFSCSLRMGELLGLTWDCIDISPTSIELGQ 234

Query: 219 --------------------NN----------------IFSIKTQKTGTIIT-VELP--- 238
                               +                    +KT KT T +  V LP   
Sbjct: 235 ASIFVEKELQRVNREAMADLDGKDIMFKFPPTFASTHTALVLKTPKTKTSVRKVFLPKTV 294

Query: 239 -----------DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SA 286
                      +    L     +     F +++ + +     +  F     + G+ K   
Sbjct: 295 AEMLVQRKADIEELKDLFGDEFVDFNLVFCSSNGKPIEGQVINRAFNKLIEEKGLPKVVF 354

Query: 287 HGVRKFSATI-SADAGATAHELMATYGWKTVDQ-AETYTKGA-DRIRLGIKNSR 337
           H +R  S T      G     +    G   V   A+ Y+    D  RL  +   
Sbjct: 355 HSLRHSSITYKLKLNGGDMKSVQGDSGHAQVKMVADVYSHIIDDDRRLNAERME 408


>gi|158313011|ref|YP_001505519.1| integrase family protein [Frankia sp. EAN1pec]
 gi|158108416|gb|ABW10613.1| integrase family protein [Frankia sp. EAN1pec]
          Length = 344

 Score = 90.5 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 76/232 (32%), Gaps = 24/232 (10%)

Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
           +   +G+ S    P++  +  +  RV   +A R+ ++  +    +   +      +  T 
Sbjct: 96  RGWLAGMRSAGAAPATIARRASLARVFSAFAARRGFLPDDVGARLATTRAPRRIPQVLTA 155

Query: 177 EDMQQFKSFWSEGSQPR------------LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
               +       G + +            L  E L  S +R S+ CR  +  + +    +
Sbjct: 156 AQADRLLETRPRGDRAQDPRDVALNLRDDLVLEILYGSAVRVSELCRLDIGDVDHERRLL 215

Query: 225 KT-QKTGTIITVELPDGFMKLLAMTPIGKETFFIN---------NDKQKMNATQFSIWFK 274
           +   K G   +V         L +       +                +++        +
Sbjct: 216 RVHGKGGRQRSVPFSVPAAGALDVWLTRGRPYLATRVEAALLLGARGGRLDPRSVRRLVQ 275

Query: 275 AKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           A+   AGV    + HG+R  +AT   + GA    +    G  ++   + YT 
Sbjct: 276 ARGAAAGVPTGLTPHGLRHGAATHMVEGGADLRSVQELLGHASLSTTQIYTH 327


>gi|319901506|ref|YP_004161234.1| integrase family protein [Bacteroides helcogenes P 36-108]
 gi|319416537|gb|ADV43648.1| integrase family protein [Bacteroides helcogenes P 36-108]
          Length = 371

 Score = 90.5 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 39/229 (17%), Positives = 83/229 (36%), Gaps = 14/229 (6%)

Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
            +    +   T +SA  + ++ R   K   R   +  N    +E+ + +       + E+
Sbjct: 145 AKKLRRNGPITRNSASGYWSTFRGFLKILYRTGMIKTNVNDFLEKIETEDTMKEALSVEE 204

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-----QNNIFSIKTQKTGTII 233
           + +      +    ++A  F   + LR SD      + +           I TQK     
Sbjct: 205 LYKLAETPCKKPILKIASLFSCMTSLRISDILALCWEDIVDYSAGGKCVHIITQKNKAED 264

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRK 291
            + + +  ++L+  +   K   F N   +        I  K     AG+ K  + H  ++
Sbjct: 265 IIPISEEALELIGYSSEKKGLVF-NGLMRSWT----QIPMKEWIRSAGITKNITFHSYQR 319

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
             AT+ A  G     + +    K++   + Y K  D  +   + S++I+
Sbjct: 320 TFATLQAATGTDIRTIQSIMAHKSITTTQRYIKVVDANKR--EASKKIT 366


>gi|75761085|ref|ZP_00741082.1| Integrase/recombinase (XerC/CodV family) [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|228902689|ref|ZP_04066836.1| Integrase/recombinase (XerC/CodV family) [Bacillus thuringiensis
           IBL 4222]
 gi|74491427|gb|EAO54646.1| Integrase/recombinase (XerC/CodV family) [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|228856876|gb|EEN01389.1| Integrase/recombinase (XerC/CodV family) [Bacillus thuringiensis
           IBL 4222]
          Length = 323

 Score = 90.5 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 46/291 (15%), Positives = 93/291 (31%), Gaps = 44/291 (15%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFD----QIIRKSGDFDYRKITTKHIRSG----VESR 126
           +  +        L+  +  S++         + R+    D  K+   HIR+      E  
Sbjct: 8   VENFLLHCDAKHLSRKTIRSYDQTLKLFTSYLERELKITDVDKVKPLHIRTYIKYLRERG 67

Query: 127 KHTPSS------------------------AIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162
           K+T +S                           +L +++V F +   +E +A NP  ++E
Sbjct: 68  KYTFTSNTASEQINYPTRRTDYGKTISETTIANYLRNIKVFFNFLEAEEDIAKNPISNIE 127

Query: 163 RPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218
             K + +     + +++++           G +  +  + +L +G+R  + C    + L 
Sbjct: 128 SIKPQRKQKILLSVDEIKKVLYSIDISTFHGFRSYVMIKLILDTGIRAGECCSMQAEDLD 187

Query: 219 --NNIFSIKTQKTGTIITVELPDGFMKLLAMT------PIGKETFFINNDKQKMNATQFS 270
             N    I   K      V   +     L             E  F       +N   F 
Sbjct: 188 IKNKSILITNPKNKKQRYVYFSNIMANDLKRWLKYRDRFSDAEYLFPTIRGTMLNVNNFE 247

Query: 271 IWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
              ++   K GV+ + H +R   A      G     L    G  +V+  + 
Sbjct: 248 ASIRSIGKKVGVHFTPHQLRNNFAKYYILNGGDWFSLSRVLGHSSVEVTQR 298


>gi|330752707|emb|CBL88171.1| putative transposase [uncultured Leeuwenhoekiella sp.]
          Length = 417

 Score = 90.5 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 45/292 (15%), Positives = 102/292 (34%), Gaps = 39/292 (13%)

Query: 87  LAVNSRISF---ESYFDQIIR---KSGDFDYRKIT-------TKHIRSGVESRKHTPSSA 133
           L   +  ++   E Y  + ++   K+ D   ++++        + +R+G    +  P   
Sbjct: 125 LKPGTLKNYFTTERYIKRYLKHKLKTNDVFLKQLSYKFIIDFEQFLRNGKSINRSQPLKN 184

Query: 134 I---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS-FWSEG 189
               + L  ++ +   A+R E++  +P +     K         ++ +++  +S   S+G
Sbjct: 185 NGVMKHLERLKKMMNLALRLEWIEKDPFVRF-SLKFTKHQRAFLSQSELEVLESGQLSKG 243

Query: 190 SQP--RLAFEFLLYSGLRCSDSCRAGVQHL-----QNNIFSIKTQKTGTIITVELPDG-- 240
                R  F F  Y+GL   D       H+      +     K +K    + + L D   
Sbjct: 244 IHQKTRDVFVFACYTGLSYIDVKLLSDDHIVRGIDGDYWIFTKREKNDEAVKIPLLDKAL 303

Query: 241 --FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSAT- 295
               K    T    E           +  + + + K  A    +NK  + H  R   AT 
Sbjct: 304 YILKKYDQGTENKSEKLL-----PVFSNQKINKYLKEVAAILKINKKLTFHAARHTFATT 358

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
           ++   G     +    G   +   + Y +  ++      + R + + +++ D
Sbjct: 359 VTLSNGVPIETVSKLLGHTKLSTTQIYARVIEQK--VSSDMRSLRNKLNTTD 408


>gi|282919848|ref|ZP_06327580.1| integrase [Staphylococcus aureus subsp. aureus C427]
 gi|282316486|gb|EFB46863.1| integrase [Staphylococcus aureus subsp. aureus C427]
          Length = 345

 Score = 90.5 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 50/325 (15%), Positives = 109/325 (33%), Gaps = 26/325 (8%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT--TLKWLIS 76
           GK   Y  K  G+R R               A +    K   + S        TL     
Sbjct: 8   GKKWQYEFKHEGKRYRKKGFRTK------REANSAGLDKLNELRSGFNIDNYITLAEYFE 61

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRSGVE--SRKHTPSSA 133
            + K+     +  N+   + +    I + K G  +  KI  +  +  +   S++H   + 
Sbjct: 62  NWIKTYKQPVVKENTYRHYRNALQHIQKHKIGKMELSKINRQVYQKFINDYSKEHAKETI 121

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSV-----ERPKRKTEGIRPWTKEDMQQFKSFWSE 188
            +   ++R     A+    +  NP   V     +  K + E     T+ ++ +      +
Sbjct: 122 RKTNGAIRSALDDALYDGLIFKNPAYKVNYKAGKPTKSEQEKFISVTEYEILK-DHVRKK 180

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTG-TIITVELPDG----F 241
            ++  LA   ++ +G R S +    ++H+    N   I  +KT  +   + +        
Sbjct: 181 RTRSSLALFIMICTGCRVSGARNIKIEHINQVKNTIFIDERKTDTSPRYISIAKSDMKHI 240

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADA 300
           M +++   I  + +        +N    +   K+      +   ++H +R    +     
Sbjct: 241 MDVISTFAISYDGYIFKKAGSIINLQAINNALKSACRVNNIPIITSHALRHTHCSYLLAK 300

Query: 301 GATAHELMATYGWKTVD-QAETYTK 324
           G + H +    G K +      Y+ 
Sbjct: 301 GVSIHYISKRLGHKNIAITTSVYSH 325


>gi|268610071|ref|ZP_06143798.1| Phage integrase [Ruminococcus flavefaciens FD-1]
          Length = 386

 Score = 90.5 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 47/309 (15%), Positives = 106/309 (34%), Gaps = 43/309 (13%)

Query: 78  YRKSAHWGSLAVNSRISFES-YFDQIIRKSGDFDYRKITTKHIRSGVESRKH----TPSS 132
           Y ++     L   + +++ES Y + I    G+   + ITT  +   ++         P S
Sbjct: 77  YFENYAPEELKPTTVLNYESQYRNHIAPILGNKKLKDITTPMLTEFLKVLGKEHHLNPIS 136

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-PWTKEDMQQFKSFW---SE 188
             +    ++ +++ A++Q +   NPC +V  PK++  G R   ++E+ ++F         
Sbjct: 137 VRKVYIVVQSIYRRALQQGFARDNPCQNVIIPKKRDSGKRYSLSEEETKRFLHLIRDKPW 196

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---------------NNIFSIKTQKTGTII 233
               +     LL++G+R  +      + +                +    + + KT + I
Sbjct: 197 DEDVKRILIVLLFTGMRIGECLGLAWEDIDFEKKTIFIHHTLSCVDGKCYLDSPKTKSSI 256

Query: 234 T-VELP--------------DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKAT 278
             + +               +     L       E  F +      + +      K    
Sbjct: 257 RLIAMNSTVEKYLNDQQAYVEQLKMALGNKYAHPEMVFPSGQGNYRDRSSVYHSLKRMTK 316

Query: 279 KAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTK--GADRIRLGIK 334
                + + H +R  +AT+  ++G     +    G   +   A  Y       +IRL   
Sbjct: 317 GTEFEDMTLHKLRHCNATLLLNSGVDLKVISEHLGHCDIGVTANIYADVLRKQKIRLADT 376

Query: 335 NSRRISSVV 343
              ++S  +
Sbjct: 377 IDDKLSDEL 385


>gi|301166953|emb|CBW26532.1| putative integrase/tyrosine recombinase [Bacteriovorax marinus SJ]
          Length = 317

 Score = 90.5 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 46/293 (15%), Positives = 92/293 (31%), Gaps = 43/293 (14%)

Query: 88  AVNSRISFESYFDQII----RKSGDFDYRKITTKHIRSGVESRKHT---------PSSAI 134
           ++++R S+E            +     Y  +   HI       +           P +  
Sbjct: 25  SLHTRRSYEIDIRHFFSWAHEQFNISSYGDLERDHIIKYRNFLQEAGGRDGSPCAPKTVA 84

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-PWT----KEDMQQFKSFWSEG 189
           + L ++     + V +  +  NP  S++RP+R  +      +    +E ++        G
Sbjct: 85  RKLAALSSYSDFLVERSILEFNPVTSIKRPRRDVKTPTNALSGTQVRELLEAIPGDTPAG 144

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQN----NIFSI--KTQKTGTII----TVELPD 239
              R        +GLR S+      +  +      +     K  K G  +     VEL D
Sbjct: 145 ILHRALLMMFFTTGLRKSEILNLKFKDYREINEYRVLEFIGKGGKIGQKVLHPDAVELLD 204

Query: 240 GFMKLLAMTPI--GKETFFIN---------NDKQKMNATQFSIWFKAKATKAGVN--KSA 286
            ++  +       G+E +            N  + +N    +      A K G+N   + 
Sbjct: 205 LYLVEMQRQGRELGQEDWLFQPSHNPTNPQNLNKPLNPRTINEIIDYYAKKIGLNFKVTP 264

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
           H  R        + G   + +       +V   + Y K   R RL      ++
Sbjct: 265 HSCRATFIGELLENGVDIYSVAREVNHSSVKTTQEYDKR--RKRLSDSPIFKL 315


>gi|210610936|ref|ZP_03288661.1| hypothetical protein CLONEX_00851 [Clostridium nexile DSM 1787]
 gi|210152236|gb|EEA83243.1| hypothetical protein CLONEX_00851 [Clostridium nexile DSM 1787]
          Length = 351

 Score = 90.5 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 54/340 (15%), Positives = 110/340 (32%), Gaps = 54/340 (15%)

Query: 16  TRHGKII----YY-----FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
           TR GK+     YY      R+   +R          +   ++                + 
Sbjct: 4   TRDGKLWRSQFYYKDWQGIRRKKNKRGFKTKGEADEWERNFLQ------------QQQKN 51

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE- 124
              + +  +  Y        L  ++ I+    FD ++          +I T  IR+    
Sbjct: 52  LDISFENFVEIYFADME-NRLRESTIINKRYVFDLKVTPYFRHKKMCEIQTSDIRAWQNE 110

Query: 125 --SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP-KRKTEGIRPWTKEDMQQ 181
              + + P+        +  LF +AVR   +  NPC       K K + +  WTK++ ++
Sbjct: 111 LIKKGYAPTYLKSINNQLAALFNYAVRYYDLRDNPCRKAGSIGKSKADEMDFWTKQEFKE 170

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT------- 234
           F        + R+AF  L ++G+R  +      + +      I+  K+   I        
Sbjct: 171 FLPSMENKPEARMAFLILYWTGMRIGELLALTYEDIDLEKRCIRINKSYQRINGKDMITP 230

Query: 235 ---------VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS 285
                    + +P    + L          +   DK++M    F+  F       G+  +
Sbjct: 231 PKTPKSNRKITIPLFLAEELKEY---CSMLYGITDKERMFR--FTKSFMEHEMVRGIKAT 285

Query: 286 ------AHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
                  H +R   A++  + G     +    G + ++  
Sbjct: 286 GVRRIRLHDLRHSHASLLVEMGFQPLAIAERLGHEKIETT 325


>gi|29028668|ref|NP_803356.1| integrase [Staphylococcus phage phi13]
 gi|88195912|ref|YP_500723.1| integrase [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|156604018|ref|YP_001429963.1| integrase [Staphylococcus phage tp310-3]
 gi|258444472|ref|ZP_05692805.1| integrase [Staphylococcus aureus A8115]
 gi|18920592|gb|AAL82331.1| integrase [Staphylococcus phage phi13]
 gi|87203470|gb|ABD31280.1| integrase [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|154818104|gb|ABS87530.1| integrase [Staphylococcus phage tp310-3]
 gi|257850363|gb|EEV74312.1| integrase [Staphylococcus aureus A8115]
 gi|329724941|gb|EGG61443.1| site-specific recombinase, phage integrase family [Staphylococcus
           aureus subsp. aureus 21189]
          Length = 345

 Score = 90.5 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 50/325 (15%), Positives = 109/325 (33%), Gaps = 26/325 (8%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT--TLKWLIS 76
           GK   Y  K  G+R R               A +    K   + S        TL     
Sbjct: 8   GKKWQYEFKHEGKRYRKKGFRTK------REANSAGLDKLNELRSGFNIDNYITLAEYFE 61

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRSGVE--SRKHTPSSA 133
            + K+     +  N+   + +    I + K G  +  KI  +  +  +   S++H   + 
Sbjct: 62  NWIKTYKQPVVKENTYRHYRNALQHIQKHKIGKMELSKINRQVYQKFINDYSKEHAKETI 121

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSV-----ERPKRKTEGIRPWTKEDMQQFKSFWSE 188
            +   ++R     A+    +  NP   V     +  K + E     T+ ++ +      +
Sbjct: 122 RKTNGAIRSALDDALYDGLIFKNPAYKVNYKAGKPTKSEQEKFISVTEYEILK-DHVRKK 180

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTG-TIITVELPDG----F 241
            ++  LA   ++ +G R S +    ++H+    N   I  +KT  +   + +        
Sbjct: 181 RTRSSLALFIMICTGCRVSGARNIKIEHINQVKNTIFIDERKTDTSPRYISIAKSDMKHI 240

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADA 300
           M +++   I  + +        +N    +   K+      +   ++H +R    +     
Sbjct: 241 MDVISTFAISYDGYIFKEAGSIINLQAINNALKSACRVNNIPIITSHALRHTHCSYLLAK 300

Query: 301 GATAHELMATYGWKTVD-QAETYTK 324
           G + H +    G K +      Y+ 
Sbjct: 301 GVSIHYISKRLGHKNIAITTSVYSH 325


>gi|71901607|ref|ZP_00683687.1| phage-related integrase [Xylella fastidiosa Ann-1]
 gi|71728617|gb|EAO30768.1| phage-related integrase [Xylella fastidiosa Ann-1]
          Length = 440

 Score = 90.5 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 51/373 (13%), Positives = 107/373 (28%), Gaps = 75/373 (20%)

Query: 7   LPPFVTKERTRHG-------KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKRE 59
           +PP + + +   G       K  +Y  +   + + +  P          SAL        
Sbjct: 57  IPPHIDQSKIPKGIYWDSSGKGRWYVLEIPRKAVAVAGP----------SALLSDLHSIM 106

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII-------RKSGDFDYR 112
              S   +  T+  +I+ Y +S  +  LA  ++  +    + +                 
Sbjct: 107 EARSGTHERGTIGHVITHYLRSTDFQRLAPRTQEDYHHQVEIVRSYKTTMGMTLDRLYIA 166

Query: 113 KITTKHIRSGVESR-------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165
           +++   I+  VE         K  P+ A      +R++F W +R  +   NP   V + K
Sbjct: 167 RMSPAIIQRIVEKIAVGNGEIKGKPTKANHLFRFLRLVFSWGIRHGHCIDNPAKGVRQAK 226

Query: 166 -RKTEGIRPWTK-EDMQQFKSF------WSEGSQPRLAFEFL---LYSGLRCSDSCRAGV 214
            RK +G+        + QF +        + GS PR     +       LR  ++     
Sbjct: 227 ERKRDGMPTLEAFAAILQFATHRGGLKAHTAGSVPRYIAPLMYIAYACRLRGIEAMTLTE 286

Query: 215 QHLQNNIFSIKTQKTGTIITVELPDGFMK-----------------LLAMTPIGKETFFI 257
            +   +      +K              +                 L            +
Sbjct: 287 ANATEHGILSNRRKRSRDNITRWTPRLRQAWAELLAHRATVLKRNCLPQRLHPQDRYLIL 346

Query: 258 NNDKQKMNATQF-SIWFKAKATKAGVNK-------SAHGVRKFSATISADAGATAHELMA 309
                 +  +   + W +  A              + HG++          G T     +
Sbjct: 347 AESGHPLTKSGLDTAWQRLMALAIQEKVISDEQRFTLHGIKH--------RGITDSTDKS 398

Query: 310 TYGWKTVDQAETY 322
           + G ++    + Y
Sbjct: 399 SGGHRSESMRQRY 411


>gi|291530087|emb|CBK95672.1| Site-specific recombinase XerD [Eubacterium siraeum 70/3]
          Length = 418

 Score = 90.5 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 48/307 (15%), Positives = 85/307 (27%), Gaps = 68/307 (22%)

Query: 85  GSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGV----ESRKHTPSSAIQFLTS 139
             L  N+  +++  ++  +  + G      +    I+       + R+  PS+     T 
Sbjct: 84  RGLKNNTFENYKYMYETFVRHQIGSKTVSSLKKTDIKRFYNYLTDERQLKPSTIDSIHTV 143

Query: 140 MRVLFKWAVRQEYVAINPCLSVER-PKR----KTEGIRPWTKEDMQQFKSFW---SEGSQ 191
           +  +   AV  +Y+  NP  +V R  K+    KTE  R  T+ + +   S+         
Sbjct: 144 LHQILDMAVDDDYIRNNPSDNVLRELKQAHCFKTEKRRALTRPEQELLLSYLKNTPAAQY 203

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-------------QKTG-------- 230
               F  L+ +GLR  +        +      I                K G        
Sbjct: 204 WYPIFAVLVGTGLRVGELTGLRWCDVDLENGVIDVNHTLVYYDHRTDGSKKGCYFNVNTP 263

Query: 231 ----TIITVELP-------------DGFMKLLAMTPIGKET--FFINNDKQKMNATQFSI 271
                   V +                 + L     I   T   FIN      +    + 
Sbjct: 264 KTPAGKRKVPMLSFVKEAIIMEKERQELLDLHCTATIDGYTDFIFINRFGNPQHQGTLNK 323

Query: 272 WFKAKATKAG--------------VNKSAHGVRKFSATISADAGATAHELMATYGWKTVD 317
             +                      + S H +R    T   +AG     +  T G K + 
Sbjct: 324 AIRRIIRDCNDEQFLKNENPEVLLPHFSCHSLRHTFTTRMCEAGVNVKVIQDTLGHKDIS 383

Query: 318 QA-ETYT 323
                YT
Sbjct: 384 TTLNIYT 390


>gi|150006166|ref|YP_001300910.1| transposase [Bacteroides vulgatus ATCC 8482]
 gi|149934590|gb|ABR41288.1| transposase [Bacteroides vulgatus ATCC 8482]
          Length = 308

 Score = 90.5 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 36/281 (12%), Positives = 90/281 (32%), Gaps = 38/281 (13%)

Query: 81  SAHWGS-----LAVNSRISFESYFD-QIIRKSGDFD-YRKITTKHIRSGVESRKHTPSSA 133
           S  W       +  ++  ++    +  I+   G+ D   +   +           +  S 
Sbjct: 10  SVAWKEYKQPYVKQSTMAAYVLILENHILPNFGESDTLHEQAVQDFVLRKIENGLSVKSV 69

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT-EGIRPWTKEDMQQFKSFWSEG-SQ 191
              L  ++++ K+ V+ E++       ++ P   T + +   +  + ++  +      S 
Sbjct: 70  KDILIVLKMVMKFGVKNEWMDYQE-WDIKYPSSSTTKELEVLSVANHKKILNHIQNHFSF 128

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------------- 235
             L     L +GLR  + C      +  +  +I   +T   I +                
Sbjct: 129 TGLGIYISLCTGLRIGEVCALKWSDINVSEGTITVNRTIERIYIIDGTKKHTELVINTPK 188

Query: 236 --------ELPDGFMKLLAMTP--IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284
                    +    + ++      + ++ + + ND+       +  ++     K G+ K 
Sbjct: 189 TQNSCREIPMTKELLAMVKPLKKVVNEDFYVLTNDEYPTEPRTYRNYYGKLMEKLGIPKL 248

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
             HG+R   AT   +AG     +    G   +    + Y  
Sbjct: 249 KYHGLRHSFATRCIEAGCDYKTVSVLLGHSNISTTLDLYVH 289


>gi|15601056|ref|NP_232687.1| site-specific recombinase IntI4 [Vibrio cholerae O1 biovar eltor
           str. N16961]
 gi|121730170|ref|ZP_01682564.1| site-specific recombinase IntI4 [Vibrio cholerae V52]
 gi|147671698|ref|YP_001215774.1| site-specific recombinase IntI4 [Vibrio cholerae O395]
 gi|153803265|ref|ZP_01957851.1| site-specific recombinase IntI4 [Vibrio cholerae MZO-3]
 gi|153817564|ref|ZP_01970231.1| site-specific recombinase IntI4 [Vibrio cholerae NCTC 8457]
 gi|153824064|ref|ZP_01976731.1| site-specific recombinase IntI4 [Vibrio cholerae B33]
 gi|227811914|ref|YP_002811924.1| site-specific recombinase IntI4 [Vibrio cholerae M66-2]
 gi|229506555|ref|ZP_04396064.1| integron integrase IntI4 [Vibrio cholerae BX 330286]
 gi|229510649|ref|ZP_04400129.1| integron integrase IntI4 [Vibrio cholerae B33]
 gi|229514763|ref|ZP_04404224.1| integron integrase IntI4 [Vibrio cholerae TMA 21]
 gi|229517220|ref|ZP_04406665.1| integron integrase IntI4 [Vibrio cholerae RC9]
 gi|229606034|ref|YP_002876738.1| integron integrase IntI4 [Vibrio cholerae MJ-1236]
 gi|254850510|ref|ZP_05239860.1| site-specific recombinase IntIA [Vibrio cholerae MO10]
 gi|255745910|ref|ZP_05419857.1| integron integrase IntI4 [Vibrio cholera CIRS 101]
 gi|262163533|ref|ZP_06031279.1| integron integrase IntI4 [Vibrio cholerae INDRE 91/1]
 gi|262168208|ref|ZP_06035906.1| integron integrase IntI4 [Vibrio cholerae RC27]
 gi|297579606|ref|ZP_06941533.1| site-specific recombinase IntI4 [Vibrio cholerae RC385]
 gi|298500137|ref|ZP_07009943.1| site-specific recombinase IntIA [Vibrio cholerae MAK 757]
 gi|5825613|gb|AAD53319.1|AF179591_1 site-specific recombinase IntI4 [Vibrio cholerae]
 gi|3095165|gb|AAC38424.1| site-specific recombinase IntIA [Vibrio cholerae]
 gi|9657688|gb|AAF96199.1| site-specific recombinase IntI4 [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121628089|gb|EAX60629.1| site-specific recombinase IntI4 [Vibrio cholerae V52]
 gi|124121205|gb|EAY39948.1| site-specific recombinase IntI4 [Vibrio cholerae MZO-3]
 gi|126511989|gb|EAZ74583.1| site-specific recombinase IntI4 [Vibrio cholerae NCTC 8457]
 gi|126518414|gb|EAZ75637.1| site-specific recombinase IntI4 [Vibrio cholerae B33]
 gi|146314081|gb|ABQ18621.1| site-specific recombinase IntI4 [Vibrio cholerae O395]
 gi|227011056|gb|ACP07267.1| site-specific recombinase IntI4 [Vibrio cholerae M66-2]
 gi|227014959|gb|ACP11168.1| site-specific recombinase IntI4 [Vibrio cholerae O395]
 gi|229345256|gb|EEO10229.1| integron integrase IntI4 [Vibrio cholerae RC9]
 gi|229348743|gb|EEO13701.1| integron integrase IntI4 [Vibrio cholerae TMA 21]
 gi|229353094|gb|EEO18034.1| integron integrase IntI4 [Vibrio cholerae B33]
 gi|229356906|gb|EEO21824.1| integron integrase IntI4 [Vibrio cholerae BX 330286]
 gi|229372520|gb|ACQ62942.1| integron integrase IntI4 [Vibrio cholerae MJ-1236]
 gi|254846215|gb|EET24629.1| site-specific recombinase IntIA [Vibrio cholerae MO10]
 gi|255735664|gb|EET91062.1| integron integrase IntI4 [Vibrio cholera CIRS 101]
 gi|262023451|gb|EEY42154.1| integron integrase IntI4 [Vibrio cholerae RC27]
 gi|262028100|gb|EEY46759.1| integron integrase IntI4 [Vibrio cholerae INDRE 91/1]
 gi|297535252|gb|EFH74086.1| site-specific recombinase IntI4 [Vibrio cholerae RC385]
 gi|297542118|gb|EFH78169.1| site-specific recombinase IntIA [Vibrio cholerae MAK 757]
 gi|327485489|gb|AEA79895.1| Integron integrase IntI4 [Vibrio cholerae LMA3894-4]
 gi|327485494|gb|AEA79900.1| Integron integrase IntI4 [Vibrio cholerae LMA3894-4]
          Length = 320

 Score = 90.5 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 43/294 (14%), Positives = 88/294 (29%), Gaps = 57/294 (19%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWA 147
           A  +  ++  +  + I          +  K +   +         A +  +       + 
Sbjct: 19  AKKTIEAYLHWITRYIHFHNKKHPSLMGDKEVEEFLTYLAVQGKVATKTQSLALNSLSFL 78

Query: 148 VRQEYVAINP-CLSVE--RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGL 204
            ++  +   P  L +   R + + +     T++++++         + +L  + L  SGL
Sbjct: 79  YKE--ILKTPLSLEIRFQRSQLERKLPVVLTRDEIRRLLEIVDP--KHQLPIKLLYGSGL 134

Query: 205 RCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLAMTPIGKETFFINN--- 259
           R  +  R  VQ +  +  +I+    K G   TV L       L       + ++  +   
Sbjct: 135 RLMECMRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHLKEQIALAKRYYDRDLHQ 194

Query: 260 -------------------------------------------DKQKMNATQFSIWFKAK 276
                                                       +  MN T      +  
Sbjct: 195 KNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVMRRHHMNETVLQKAVRRS 254

Query: 277 ATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           A +AG+ K+   H +R   AT   + GA    +    G   V   + YT   DR
Sbjct: 255 AQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHVLDR 308


>gi|9630357|ref|NP_046786.1| Int [Enterobacteria phage P2]
 gi|117624294|ref|YP_853207.1| putative phage integrase [Escherichia coli APEC O1]
 gi|168750144|ref|ZP_02775166.1| integrase [Escherichia coli O157:H7 str. EC4113]
 gi|168756346|ref|ZP_02781353.1| integrase [Escherichia coli O157:H7 str. EC4401]
 gi|168770061|ref|ZP_02795068.1| integrase [Escherichia coli O157:H7 str. EC4486]
 gi|168775961|ref|ZP_02800968.1| integrase [Escherichia coli O157:H7 str. EC4196]
 gi|168782415|ref|ZP_02807422.1| integrase [Escherichia coli O157:H7 str. EC4076]
 gi|168798987|ref|ZP_02823994.1| integrase [Escherichia coli O157:H7 str. EC508]
 gi|195937855|ref|ZP_03083237.1| putative phage integrase [Escherichia coli O157:H7 str. EC4024]
 gi|208807655|ref|ZP_03249992.1| integrase [Escherichia coli O157:H7 str. EC4206]
 gi|208813905|ref|ZP_03255234.1| integrase [Escherichia coli O157:H7 str. EC4045]
 gi|208818402|ref|ZP_03258722.1| integrase [Escherichia coli O157:H7 str. EC4042]
 gi|209400896|ref|YP_002271366.1| integrase [Escherichia coli O157:H7 str. EC4115]
 gi|254793910|ref|YP_003078747.1| integrase [Escherichia coli O157:H7 str. TW14359]
 gi|307314933|ref|ZP_07594523.1| integrase family protein [Escherichia coli W]
 gi|6136261|sp|P36932|VINT_BPP2 RecName: Full=Integrase
 gi|3139116|gb|AAD03297.1| Int [Enterobacteria phage P2]
 gi|115513418|gb|ABJ01493.1| putative phage integrase [Escherichia coli APEC O1]
 gi|187768624|gb|EDU32468.1| integrase [Escherichia coli O157:H7 str. EC4196]
 gi|188015634|gb|EDU53756.1| integrase [Escherichia coli O157:H7 str. EC4113]
 gi|189000073|gb|EDU69059.1| integrase [Escherichia coli O157:H7 str. EC4076]
 gi|189356536|gb|EDU74955.1| integrase [Escherichia coli O157:H7 str. EC4401]
 gi|189360964|gb|EDU79383.1| integrase [Escherichia coli O157:H7 str. EC4486]
 gi|189378536|gb|EDU96952.1| integrase [Escherichia coli O157:H7 str. EC508]
 gi|208727456|gb|EDZ77057.1| integrase [Escherichia coli O157:H7 str. EC4206]
 gi|208735182|gb|EDZ83869.1| integrase [Escherichia coli O157:H7 str. EC4045]
 gi|208738525|gb|EDZ86207.1| integrase [Escherichia coli O157:H7 str. EC4042]
 gi|209162296|gb|ACI39729.1| integrase [Escherichia coli O157:H7 str. EC4115]
 gi|254593310|gb|ACT72671.1| integrase [Escherichia coli O157:H7 str. TW14359]
 gi|306905639|gb|EFN36169.1| integrase family protein [Escherichia coli W]
 gi|315061400|gb|ADT75727.1| putative phage integrase [Escherichia coli W]
 gi|323378021|gb|ADX50289.1| integrase family protein [Escherichia coli KO11]
 gi|323951882|gb|EGB47756.1| phage integrase [Escherichia coli H252]
 gi|323961683|gb|EGB57287.1| phage integrase [Escherichia coli H489]
          Length = 337

 Score = 90.5 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 42/207 (20%), Positives = 78/207 (37%), Gaps = 10/207 (4%)

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYV-AINPCLSVERPKRKTEGIRPWTKEDM 179
           +   S+   PSS  + LT +  +F   +  E     +P    +R K +       T+E++
Sbjct: 111 ATRRSQGIKPSSINRDLTCISGMFTALIEAELFFGEHPIRGTKRLKEEKPETGYLTQEEI 170

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239
               +    G   ++A    L +G R  ++ R   +++ +N  +    KT    TV + +
Sbjct: 171 ALLLAALD-GDNKKIAI-LCLSTGARWGEAARLKAENIIHNRVTFVKTKTNKPRTVPISE 228

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISAD 299
              K++A    G    F + D  +   T      KA      + ++ H +R   AT    
Sbjct: 229 AVAKMIADNKRG--FLFPDADYPRFRRT-----MKAIKPDLPMGQATHALRHSFATHFMI 281

Query: 300 AGATAHELMATYGWKTVDQAETYTKGA 326
            G +   L    G   ++Q   Y   A
Sbjct: 282 NGGSIITLQRILGHTRIEQTMVYAHFA 308


>gi|23097608|ref|NP_691074.1| integrase [Oceanobacillus iheyensis HTE831]
 gi|22775831|dbj|BAC12109.1| integrase [Oceanobacillus iheyensis HTE831]
          Length = 392

 Score = 90.5 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 51/333 (15%), Positives = 107/333 (32%), Gaps = 53/333 (15%)

Query: 50  ALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGD 108
           AL+    + + +   +    T + +  E+ K  H   +   +  + ES F++ I+   G 
Sbjct: 48  ALSKILVEVDELGIRQNDQLTFQEVFEEWFK-QHRREVKPTTVYAMESKFNRRILPVFGP 106

Query: 109 FDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168
           +  + IT  H +  +        +   +      +F++A++ + +  NP   V  PK K 
Sbjct: 107 YKMKDITRSHCQKAINGWAKELKTFKDYKIQANQVFRYAMKMDMIKRNPMDYVTLPKLKH 166

Query: 169 E---------GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ- 218
           E             +T+E+++ F     +          L ++G R  +        +  
Sbjct: 167 EMEYVAELEEKKHYYTREELRTFLEAIQKDDMAYTMLRLLSFTGARKGELYALHWSDVDF 226

Query: 219 --------------NNIFSIKTQKTG-TIITVELPDGFMKLLAMTPIGK---------ET 254
                              ++T KT  +   V + D  + +L      +           
Sbjct: 227 HQKSISLKKTLIYTGGEKQLQTSKTKASRRIVSVDDETLAILKKWRSKQIQRYLTLELAA 286

Query: 255 FFINNDKQK-MNATQFSIWFKAKATKAGVNKSA---------------HGVRKFSATISA 298
            F ++DKQ                  A +N                  H  R   A++  
Sbjct: 287 PFQSDDKQPIFTVYNQLKHEMDYCRLAYLNDKLERIYQKNPELPQIKVHEFRHTHASLLF 346

Query: 299 DAGATAHELMATYGWKTVDQA-ETYTKGADRIR 330
            AGA+  ++ +  G   +    + YT   D  +
Sbjct: 347 AAGASIKDVQSRLGHTDIQTTMDIYTHVTDEAK 379


>gi|301311134|ref|ZP_07217062.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           20_3]
 gi|300830708|gb|EFK61350.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           20_3]
          Length = 310

 Score = 90.5 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 46/287 (16%), Positives = 99/287 (34%), Gaps = 36/287 (12%)

Query: 90  NSRISFESYFDQIIRKSGD--FDYRKITT---KHIRSGVESRKHTPSSAIQFLTSMRVLF 144
           +S  S++   +  IR SG     Y  I     +   + +  +    ++   ++  +R ++
Sbjct: 24  SSAKSYQDAMNSFIRYSGTDRIPYTYINKDTLRRYEAYLLEKGCMRNTVSTYIRRLRCIY 83

Query: 145 KWAVRQEYVAINPCL------SVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR---LA 195
             AV     A  P L       VE  ++K+         D+ +  +   +G + R   L 
Sbjct: 84  NKAVENGEAAFIPSLFKGVFTGVESQRKKS-----LPLGDLNRLMTVPVKGEKLRKTQLT 138

Query: 196 FEFLL-YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI---- 250
              +  Y G+   D       +++N I     QKTGT + +E+ D    +          
Sbjct: 139 LCLMFQYGGMSFVDFAHLNRGNIKNGILDYNRQKTGTSMRLEVLDTAEAMYKELAGERGG 198

Query: 251 GKETFFINNDKQK----------MNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISA 298
           G    F      K             ++F+   +     AG+  + +++ +R   A    
Sbjct: 199 GSGYLFPFLSGTKNGHEAYLEYNAALSRFNRNLRMLKEVAGIASDVTSYTIRHSFAMALK 258

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345
           +       +    G K++   + Y +     ++ + N     +V + 
Sbjct: 259 EQNVPIEMISELLGHKSIKTTQIYLRSFSLEKMTVVNKSCFENVYNY 305


>gi|300862223|ref|ZP_07108303.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TUSoD Ef11]
 gi|300848748|gb|EFK76505.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TUSoD Ef11]
          Length = 397

 Score = 90.5 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 49/342 (14%), Positives = 106/342 (30%), Gaps = 57/342 (16%)

Query: 23  YYFRKGHG--------RRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           YYFR   G        ++ R  +  +      Y   L      +    S  K   T    
Sbjct: 14  YYFRANLGYDSKGKKIQKYRSGFTTKKEAREEYSKLLL----MKPEELSENKDKMTFNHY 69

Query: 75  ISE----YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
           I E    + K+     + + +  +      +            I    +++         
Sbjct: 70  IFEIFLPWYKT----QVKLRTYENRLPTIKKHFSYFDKMAVSDIEPIDVQNWQLKLSKKC 125

Query: 131 SSAIQFLTSMRVLFKWAVRQ----EYVAINPCLSVERPKRKTEGIRPWTKEDMQQF---- 182
            S   ++ +++ LF  A+ +         NP   +   K++   I  WTKE+ ++     
Sbjct: 126 KS--SYVRAVQGLFSVAMDRAIVLGITTTNPSKIIGNVKKQKSKIEFWTKEEFEKVISLI 183

Query: 183 --KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--------NNIFSIKTQ----- 227
             + ++       L F F+  +G+R  ++     + +         N     K Q     
Sbjct: 184 YKEDYYQHFLFISLWFLFM--TGMRIGEATAIQWEDIDFDSGVLTINKTLYYKNQSDYRF 241

Query: 228 ---KTGTIITVELPDG-----FMKLLAMTPIGKET-FFINNDKQKMNATQFSIWFKAKAT 278
              KT   +   + D        +         +T F ++ +         +   +  A 
Sbjct: 242 VEPKTKASVRHIVLDECTLNYLSEWKKAQQNLIQTDFVMSYNGIPTQKHTLAHAIERYAK 301

Query: 279 KAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
            AG+++   HG+R   A++    G     +    G + ++  
Sbjct: 302 LAGIHRIRIHGLRHSHASLLISMGENPLIIKDRLGHEDIETT 343


>gi|259910166|ref|YP_002650522.1| Phage integrase [Erwinia pyrifoliae Ep1/96]
 gi|224965788|emb|CAX57320.1| Phage integrase [Erwinia pyrifoliae Ep1/96]
          Length = 235

 Score = 90.5 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 37/208 (17%), Positives = 70/208 (33%), Gaps = 19/208 (9%)

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP-WTKEDMQQFKSFWSE----GSQPR 193
            ++V F+W  +Q  +  NP   +E P+ +    R   + E ++   +        G + R
Sbjct: 1   MLQVWFRWLAKQNLILANPAADLELPRLEKHLPRTILSVEQVEDIVNLCDLSTLQGMRDR 60

Query: 194 LAFEFLLYSGLRCSDSCRA-GVQ-HLQNNIFSIKTQKTGTIITVELPDGFMKLLA----- 246
              E L  +G+R  +  R           I +I   K      + + +  +  L      
Sbjct: 61  TLPELLWSTGIRRGEVARLDTWSADFSRRILTIVQGKGKQDRVIPVGERALWWLRHYLHK 120

Query: 247 -----MTPIGKETFFINNDK-QKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISAD 299
                +   G +  F+  D    + A   +         AG+ K S H  R   AT   +
Sbjct: 121 VRPEIVAVAGCKALFVAMDGVAGLTANGITHAVVPYLRAAGIEKGSCHLFRHAMATQMLE 180

Query: 300 AGATAHELMATYGWKTVDQAETYTKGAD 327
            GA    + A +      + E  +   +
Sbjct: 181 NGADLRWIQAMHASTHPAECEADSHKNN 208


>gi|758229|emb|CAA57755.1| integrase [Staphylococcus phage phi13]
          Length = 345

 Score = 90.5 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 50/325 (15%), Positives = 109/325 (33%), Gaps = 26/325 (8%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT--TLKWLIS 76
           GK   Y  K  G+R R               A +    K   + S        TL     
Sbjct: 8   GKKWQYEFKHEGKRYRKKGFRTK------REANSAGLDKLNELRSGFNIDNYITLAEYFE 61

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRSGVE--SRKHTPSSA 133
            + K+     +  N+   + +    I + K G  +  KI  +  +  +   S++H   + 
Sbjct: 62  NWIKTYKQPVVKENTYRHYRNALQHIQKHKIGKMELSKINRQVYQKFINDYSKEHAKETI 121

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSV-----ERPKRKTEGIRPWTKEDMQQFKSFWSE 188
            +   ++R     A+    +  NP   V     +  K + E     T+ ++ +      +
Sbjct: 122 RKTNGAIRSALDDALYDGLIFKNPAYKVNYKAGKPTKSEQEKFISVTEYEILK-DHVRKK 180

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTG-TIITVELPDG----F 241
            ++  LA   ++ +G R S +    ++H+    N   I  +KT  +   + +        
Sbjct: 181 RTRSSLALFIMICTGCRVSGARNIKIEHINQVKNTIFIDERKTDTSPRYISIAKSDMKHI 240

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADA 300
           M +++   I  + +        +N    +   K+      +   ++H +R    +     
Sbjct: 241 MDVISTFAISYDGYIFKEAGSIINLQAINNALKSACRVNNIPIITSHALRHTHCSYLLAK 300

Query: 301 GATAHELMATYGWKTVD-QAETYTK 324
           G + H +    G K +      Y+ 
Sbjct: 301 GVSIHYISKRLGHKNIAITTSVYSH 325


>gi|255012873|ref|ZP_05284999.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_7]
          Length = 231

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 34/226 (15%), Positives = 84/226 (37%), Gaps = 21/226 (9%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRKH 128
           K +I+ Y        SL+ NS  ++ +  D+++R + D   D ++I+   ++  +   + 
Sbjct: 5   KDIINRYNTYLRLEKSLSANSIDAYLTDLDKLLRFAEDEKKDVKEISYDDLQQFIAQLRD 64

Query: 129 ---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS- 184
               P S  + ++ ++  +++ +   Y+  +P   +E PK   +     T  ++      
Sbjct: 65  IGIHPRSQARIISGIKSFYRFLLLDNYITNDPTELLESPKIGLKLPEVLTVNEINSILDT 124

Query: 185 ---FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-VELPDG 240
                 EG + R   E L   GLR S+        +      I+ +  G+    V + + 
Sbjct: 125 IDLTLPEGQRNRAMLEVLYSCGLRVSELTGLRYSDIYPKEGFIRVEGKGSKQRLVPISEV 184

Query: 241 FMKLLAMTPIGKET----------FFINNDKQKMNATQFSIWFKAK 276
            ++ +      + +           F++     ++        K +
Sbjct: 185 ALREIKNYLYDRNSVVVKKGFEDILFLSRRGTALSRIMVFHIIKQQ 230


>gi|171779673|ref|ZP_02920629.1| hypothetical protein STRINF_01510 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281775|gb|EDT47209.1| hypothetical protein STRINF_01510 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 379

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 46/313 (14%), Positives = 103/313 (32%), Gaps = 47/313 (15%)

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF-DYRKITT 116
           +E +         L  +I+E+       SL   S+ + E     + +   +     K+TT
Sbjct: 52  KEKLAKLTTTDAKLVDIINEWWNHHK-PSLKPTSQKTIEYKVKGLTKVIDEKVLLSKVTT 110

Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE--RPKRKTEGIR-- 172
           K +++ V+    +     +     +  F +A+   YV+ NP   V+  +P +  E     
Sbjct: 111 KFLQNLVDDVPGSFDKKKRIKQIFKQTFDYAISIGYVSENPATGVKLSKPPKTIEDFENI 170

Query: 173 ---PWTKEDMQQFKS---FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-- 224
                 K+++ +        S   +  L  EF++Y+G R  ++     ++++     I  
Sbjct: 171 TQKYLEKDELYRLLKEMNRHSVSKKIALLAEFMVYNGCRFGEAIALRPENIKEEYIEIHG 230

Query: 225 -------------KTQKTGTIIT---------------VELPDGFMKLLAMTPIGKETFF 256
                        K                        V+L +   +  + +       F
Sbjct: 231 TLDYMTSGYENSQKQTPKTNSSWRETLLTEREREILNEVQLLNKLEEDTSQSCKKTGYIF 290

Query: 257 INNDKQKMNATQFSIWFKAKATKAG--VNK--SAHGVRKFSATISADAGATAHELMATYG 312
           ++ +   +    F+   +A   +    + K  ++H  R    +  A+ G     +M   G
Sbjct: 291 VSRNGIPIQDNSFNKSIRAANNRLSNPIPKHLTSHIFRHTLVSFLAEKGVPLKAIMDRVG 350

Query: 313 WKTVDQA-ETYTK 324
                   + YT 
Sbjct: 351 HSDSKTTIQIYTH 363


>gi|97954418|emb|CAJ43593.1| integrase [Enterobacteria phage PhiD145]
          Length = 331

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 51/305 (16%), Positives = 93/305 (30%), Gaps = 22/305 (7%)

Query: 29  HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLA 88
            G+RIR           A+   +  +   +E++  P     TL  L+  +     +   +
Sbjct: 21  DGKRIR-RKFKTKGEAQAFERHVLVNYHNKEWLEKP-ADRRTLTELLGRWW---IYHGKS 75

Query: 89  VNSRISFESYFDQIIRKSGDF------DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRV 142
                        II K  +          K T    R  + +    P+S  + L  M  
Sbjct: 76  HERGDIERGRLTTIIAKFAEMGVSRADQLTKKTITDYRVVMMNDGLKPASVNRHLAIMSG 135

Query: 143 LFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201
           +F   +    Y + NP   V+R +     +   + E++ +  S          A    L 
Sbjct: 136 MFTKLIDAGEYHSHNPFREVKRLREAVTEMAFLSSEEITRLLSMLD--GDELNATLVCLS 193

Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK 261
           +G R S+      +H+ N + +    K G   T+ +      L+            N   
Sbjct: 194 TGGRWSEVSNLKAEHIINQMVTFMKTKNGKRRTIPVS---QDLIKRIKTKNSGRLFNA-- 248

Query: 262 QKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
              +  +     +         ++ H +R   AT     G     L    G   + Q  T
Sbjct: 249 ---SYYKVRNALREVKPDLLDGQAVHVLRHTFATHFIMNGGNIITLQRILGHSHIQQTMT 305

Query: 322 YTKGA 326
           Y   A
Sbjct: 306 YAHFA 310


>gi|163794184|ref|ZP_02188156.1| phage integrase [alpha proteobacterium BAL199]
 gi|159180352|gb|EDP64873.1| phage integrase [alpha proteobacterium BAL199]
          Length = 410

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 56/340 (16%), Positives = 118/340 (34%), Gaps = 48/340 (14%)

Query: 49  SALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL--------AVNSRI-SFESYF 99
           +A  G  P+ E     R+   T+  L + Y ++A  G +        A ++         
Sbjct: 71  AASEGRDPQLE--RQERRAALTVAELCTVYMETAEAGQVRTRFGRPKAASTLAIDRGRID 128

Query: 100 DQIIRKSGDFDYRKITTKHIRSGVESRKHT-------------------PSSAIQFLTSM 140
             ++   G+     +T   ++   +                          +A + +  +
Sbjct: 129 RHLVPLIGNVPAHALTRAAVQRLADDIASGKTAGRVKTKSRGVAHVTGGAGTAARVIDLL 188

Query: 141 RVLFKWAVRQEYV-AINPCLSVERPKRKTEGIRPWTKEDMQQF----KSFWSEGSQPRLA 195
             ++ WA +++ V  +NP   V+  K  T+  R  T ++MQ      ++   +      A
Sbjct: 189 GGIYSWAAKRDLVPTVNPAHGVDTAKAGTK-DRVLTVDEMQALGKAIEAAQEKQPMAAGA 247

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-ELPDGFMKLLAMTPIGKET 254
              +  +GLR  ++C      +  +  S++   T T  ++  L    + LL   P     
Sbjct: 248 LRLIALTGLRREEACGLRWAEVDLDAASLRLSSTKTGRSLRPLGSPAVDLLRHLPQLDAA 307

Query: 255 FFINNDKQKMNATQFSIWFKAKAT-------KAGV-NKSAHGVRKFSATISADAGATAHE 306
           F   + + +   T  S                AG+ +  +H  R+  A+++AD G     
Sbjct: 308 FVFPSSRSRDPRTGQSARAADLKKQLAAIFDAAGLADARSHDCRRTFASVAADEGFGDGT 367

Query: 307 LMATYGWKTVD-QAETYTKGADRIRLGIKNSRRISSVVDS 345
           +    G       A  Y +  D   +    + R+S  +D+
Sbjct: 368 IGELLGHARRGVTAVHYVRRLDSALIA--AADRVSRRIDA 405


>gi|167969523|ref|ZP_02551800.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis
           H37Ra]
          Length = 352

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 47/153 (30%), Gaps = 13/153 (8%)

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLL 245
               + RL  E L  +G+R S+ C   V  +      ++   K     TV         L
Sbjct: 33  PLALRDRLIVELLYATGIRVSELCGLDVDDIDTGHRLVRVLGKGNKQRTVPFGQPAADAL 92

Query: 246 AM----------TPIGKETFFINNDKQKMNATQFSIWFKA--KATKAGVNKSAHGVRKFS 293
                       T        +    ++++  Q          A     +   HG+R  +
Sbjct: 93  HAWLVDGRRALVTAESGHALLLGARGRRLDVRQARTAVHQTVAAVDGAPDMGPHGLRHSA 152

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           AT   + GA    +    G  ++   + YT  A
Sbjct: 153 ATHLLEGGADLRVVQELLGHSSLATTQLYTHVA 185


>gi|62178894|ref|YP_215311.1| hypothetical protein SC0324 [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|62126527|gb|AAX64230.1| Int [Salmonella enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|322713346|gb|EFZ04917.1| DNA breaking-rejoining enzyme, catalytic core [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. A50]
          Length = 387

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 47/266 (17%), Positives = 97/266 (36%), Gaps = 29/266 (10%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQ---FLTS 139
             L   +     S   ++  +  + +++ +     + G +    K  P++       L+ 
Sbjct: 93  MQLKDITETKIYSAIQKMTNRRHEENWKLMDEACRKKGRQPPVFKPKPAAVATKATHLSF 152

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199
           ++ L + A  +E+  ++    ++ P+ K + IR     + ++      E  +     EF 
Sbjct: 153 IKALLR-AAEREWKMLDKAPIIKIPQPKNKRIRWLEPHEAKRLIDECPEPLKS--VVEFA 209

Query: 200 LYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF 255
           L +GLR S+      Q +           +  K+   I V L D   ++L    IG    
Sbjct: 210 LSTGLRRSNIINLEWQQIDMQRKVAWIHPEQSKSNQAIGVALNDTACRVLKKQ-IGNHHK 268

Query: 256 FINNDK--------------QKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADA 300
           ++   K              +KM     + W +A   +AG+ +   H +R   A+    A
Sbjct: 269 WVFVYKESSTKPDGTKSPVVRKMRYDANTAW-RAALKRAGIEDFRFHDLRHTWASWLVQA 327

Query: 301 GATAHELMATYGWKTVDQAETYTKGA 326
           G     L    GW++++    Y   A
Sbjct: 328 GVPISVLQEMGGWESIEMVRRYAHLA 353


>gi|299141180|ref|ZP_07034317.1| integrase [Prevotella oris C735]
 gi|298577140|gb|EFI49009.1| integrase [Prevotella oris C735]
          Length = 409

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 44/256 (17%), Positives = 85/256 (33%), Gaps = 28/256 (10%)

Query: 89  VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES-------RKHTPSSAIQFLTSMR 141
            ++RI  + +  +   K  D  + ++T + I    +        ++ T  +A  FL ++ 
Sbjct: 138 HSTRIHLQRFIQR-KYKVSDLAFSQLTEQFIYDFRQYFVGECGFQECTFYNAATFLKTV- 195

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-----FKSFWSEGSQPRLAF 196
              + A R+           +  K   +  +   +E + +     F+    E    R  F
Sbjct: 196 --CRLAYREGLADTLLFDKAKISKGDNKLPKALDREALDKLKVLRFEDLEEEMETARDIF 253

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251
            F  Y G    D       HL  +           QKTG +  V+L    ++L+      
Sbjct: 254 LFACYVGAAYCDLMELSKSHLVRDDEGSLWLKFNRQKTGVLCRVKLLPEAIRLIERFHSD 313

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS-ADAGATAHELM 308
           +    +      +    +    KA   +AG+    + H  R   AT+   + G     + 
Sbjct: 314 ERETLL----PFIKYKNYQSCLKALRLRAGISFPFTTHTARHTFATLITLEQGVPIETVS 369

Query: 309 ATYGWKTVDQAETYTK 324
              G   +   E Y K
Sbjct: 370 KMLGHSNISMTERYAK 385


>gi|16799149|ref|NP_469417.1| hypothetical protein lin0071 [Listeria innocua Clip11262]
 gi|16412491|emb|CAC95304.1| lin0071 [Listeria innocua Clip11262]
          Length = 400

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 48/314 (15%), Positives = 94/314 (29%), Gaps = 55/314 (17%)

Query: 66  KKPTTLKWLIS-EYRKSAHWGSLAVNSRISF-ESYFDQIIRKSGDFDYRKITTKHIRSGV 123
               T K  +  EY       +L V +   + +S   +     G     KITT HI + V
Sbjct: 70  PARMTFKAFVENEYMPKHAQNNLEVKTWTEYYKSIVARAYPAFGGVQMDKITTLHIVNLV 129

Query: 124 ESRKH--------------------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163
              +                     +P S      ++  +F+ AV  + + INP   V  
Sbjct: 130 AKLQKPGARLDVKPTDSDEKKNKPLSPRSIRNIYFAINSVFETAVEWKVIPINPAEGVRL 189

Query: 164 PKRKTEGIRPWTKEDMQQFKSFW-SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NN 220
           PK        +T  +++   +    E  + ++     L SG R ++     V+H+    +
Sbjct: 190 PKTTKRPPTIYTPAEIELLNAALVKEPLRLQVMIYIALISGCREAELAALEVKHVNLIED 249

Query: 221 IFSIKT---------------QKTGTIITVELPDGFMKLLAMTP-------------IGK 252
             + +                 K      V +P     L+                    
Sbjct: 250 ELTFEQTLVAKAGEGLLLKESTKNDVAGIVSIPAWLTNLIETYISNEVLDLKTEGKWANH 309

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATY 311
           +  F + + + +        +K    +  +     H +R  SAT+  + G     +    
Sbjct: 310 KFLFADMEGKPIRPDSIYQRWKRFLERHNLPVIRFHDLRHTSATLLLNKGRDIKIIQERL 369

Query: 312 GW-KTVDQAETYTK 324
               +V  +  Y  
Sbjct: 370 RHKSSVTTSNIYAH 383


>gi|255010477|ref|ZP_05282603.1| site-specific recombinase, phage integrase family protein
           [Bacteroides fragilis 3_1_12]
          Length = 537

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 51/302 (16%), Positives = 94/302 (31%), Gaps = 41/302 (13%)

Query: 71  LKWLISEYRKSAHW----GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
            K  + EY     W       +  +  S  S    +++         IT   + + +  R
Sbjct: 241 FKGFVMEYL---DWLKQCKGYSPRTIESRYSQLKTMMQTLKVDSLEDITPSILDNYICKR 297

Query: 127 KH----TPSSAIQFLTSMRVLFKWAVRQEYVAINP----CLSVERPKRKTEGIRPWTKED 178
                    +    +T +R  FK+A  +     NP     L   R               
Sbjct: 298 HDEDGCNRRTIAATVTILRGFFKYAEEKGLC--NPGLVYSLKAPRVYAHENLPSFVPYNI 355

Query: 179 MQQF----KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTI 232
           +QQ     K     G +       L   GLRCS+     ++ +   N    ++  K    
Sbjct: 356 VQQILQSKKDTAGIGVRDYAILLLLSVYGLRCSEVTNMKLKDIDWRNETLYLRRAKNCRP 415

Query: 233 ITVELPD-------GFMKLLAMTPIGKETFFINNDKQK--MNATQFSIWFKAKATKAGV- 282
             + L          ++K +      KE  F+        ++ +      K +    G+ 
Sbjct: 416 QVLPLLPIVGNAIVRYIKEVRFNKSKKEYLFLCKRAPHEQLSTSTIYNLVKKELKDKGLE 475

Query: 283 --NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
             +   H +R   AT   + G +  E+    G   +D    Y K      + IKN R+++
Sbjct: 476 LRHYGPHSLRHTCATHLINTGHSLKEIADLLGHVGLDTTRIYAK------VDIKNLRKVA 529

Query: 341 SV 342
            +
Sbjct: 530 DM 531


>gi|317049649|ref|YP_004117297.1| integrase family protein [Pantoea sp. At-9b]
 gi|316951266|gb|ADU70741.1| integrase family protein [Pantoea sp. At-9b]
          Length = 343

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 49/318 (15%), Positives = 91/318 (28%), Gaps = 35/318 (11%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87
             G+RIR           +Y   +      + ++     K   ++ L+  +  +    +L
Sbjct: 20  RDGKRIR-RQFATKGEALSYEKYVKEQAQDKPWLGEKADKRRVIE-LVELWFNTHG-ITL 76

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH------------TPSSAIQ 135
           A   +    +         G+    +   K   S  E R              TP +   
Sbjct: 77  ADGEKR--RTTMAFACEAMGNPLATEFNAKIFASYREQRLSGKITRSTRVKTVTPRTVNL 134

Query: 136 FLTSMRVLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
            L   R +F    R  E+ A NP  +V   K     +   T E+++   +         L
Sbjct: 135 ELAYFRAMFNELRRLDEWTAPNPLENVREFKISESEMAYLTIEEIRALLAECENSRSKDL 194

Query: 195 --AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252
               +  L +G R S++       ++         K      V + +     L  +   +
Sbjct: 195 TTIVKICLATGARWSEAEGLKGNQIRAGQIIYVKTKGKKNRAVPITEKLQAELPSSRKAQ 254

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA----HGVRKFSATISADAGATAHELM 308
           + F                 F+    +AG+   A    H +R   A+     G     L 
Sbjct: 255 QLF-----------ATCYSAFRKAMQRAGIETPAGQLTHVLRHTFASHFMMNGGNILVLQ 303

Query: 309 ATYGWKTVDQAETYTKGA 326
              G   +     Y   A
Sbjct: 304 RILGHTDIKVTMRYAHFA 321


>gi|149923694|ref|ZP_01912089.1| Phage integrase [Plesiocystis pacifica SIR-1]
 gi|149815440|gb|EDM74979.1| Phage integrase [Plesiocystis pacifica SIR-1]
          Length = 316

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 39/274 (14%), Positives = 85/274 (31%), Gaps = 22/274 (8%)

Query: 70  TLKWLISEYR-KSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRK 127
           TL      Y            ++  S ES+ +  +I K G+    +I  + ++    S  
Sbjct: 3   TLAEFAPRYMDGYVRANRQKPSTIESKESHLNAHLIPKLGEMRLDQIDNETVQRLKGSMS 62

Query: 128 HTPSSA-IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
              +      LT++  + K AV  + +   P   +   K        +  ++ ++  +  
Sbjct: 63  SMSNKTVNNVLTTLNTMLKCAVEWKILEEMPAR-IRLLKVTKREAAFFDFDEYERLVAAA 121

Query: 187 -SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-----------KTGTIIT 234
                  +L       +G+R  +        +      +  +           K   I  
Sbjct: 122 GKVEPWVQLMVLLGGDAGMRPGEVRALHWTSVDFQRQRLTIERNEHKGSFLLPKHDKIRR 181

Query: 235 VELPDGFMKLLAM-TPIGKETFFINNDK----QKMNATQFSIWFKAKATKAGV-NKSAHG 288
           V + D   + L+    +     F  +      + M+      W      +A + +   H 
Sbjct: 182 VPMTDAVAQALSAHRHLRGPLVFYRDGGYAAGKVMSPRYQRYWLDKALRRANLPDLGPHT 241

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           +R    +  A  GA A  +M   G + +   + Y
Sbjct: 242 LRHTFCSHLAMRGAPARAIMELAGHRDLLTTQGY 275


>gi|117623084|ref|YP_851997.1| integrase [Escherichia coli APEC O1]
 gi|115512208|gb|ABJ00283.1| Integrase [Escherichia coli APEC O1]
          Length = 331

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 51/305 (16%), Positives = 93/305 (30%), Gaps = 22/305 (7%)

Query: 29  HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLA 88
            G+RIR           A+   +  +   +E++  P     TL  L+  +     +   +
Sbjct: 21  DGKRIR-RKFKTKGEAQAFERHVLVNYHNKEWLEKP-ADRRTLTELLGRWW---IYHGKS 75

Query: 89  VNSRISFESYFDQIIRKSGDF------DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRV 142
                        II K  +          K T    R  + +    P+S  + L  M  
Sbjct: 76  HERGGIERGRLTTIIAKFAEMGVSRADQLTKKTITDYRVVMMNDGLKPASVNRHLAIMSG 135

Query: 143 LFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201
           +F   +    Y + NP   V+R +     +   + E++ +  S          A    L 
Sbjct: 136 MFTKLIDAGEYHSHNPFREVKRLREAVTEMAFLSSEEITRLLSMLD--GDELNATLVCLS 193

Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK 261
           +G R S+      +H+ N + +    K G   T+ +      L+            N   
Sbjct: 194 TGGRWSEVSNLKAEHIINQMVTFMKTKNGKRRTIPVS---QDLIKRIKTKNSGRLFNA-- 248

Query: 262 QKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
              +  +     +         ++ H +R   AT     G     L    G   + Q  T
Sbjct: 249 ---SYYKVRNALREVKPDLPDGQAVHVLRHTFATHFIMNGGNIITLQRILGHSNIQQTMT 305

Query: 322 YTKGA 326
           Y   A
Sbjct: 306 YAHFA 310


>gi|254284963|ref|ZP_04959929.1| site-specific recombinase IntI4 [Vibrio cholerae AM-19226]
 gi|150424966|gb|EDN16743.1| site-specific recombinase IntI4 [Vibrio cholerae AM-19226]
          Length = 320

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 43/294 (14%), Positives = 89/294 (30%), Gaps = 57/294 (19%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWA 147
           A  +  ++  +  + I          +  K +   +         A +  +       + 
Sbjct: 19  AKKTIEAYLHWITRYIHFHNKKHPSLMGDKEVEEFLTYLAVQGKVATKTQSLALNSLSFL 78

Query: 148 VRQEYVAINP-CLSV--ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGL 204
            ++  +   P  L +  +R + + +     T++++++         + +L  + L  SGL
Sbjct: 79  YKE--ILKTPLSLEIHFQRSQLERKLPVVLTRDEIRRLLEIVDP--KHQLPIKLLYGSGL 134

Query: 205 RCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLAMTPIGKETFFINN--- 259
           R  +  R  VQ +  +  +I+    K G   TV L       L       + ++  +   
Sbjct: 135 RLMECMRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHLKEQIALAKRYYDRDLHQ 194

Query: 260 -------------------------------------------DKQKMNATQFSIWFKAK 276
                                                       +  MN T      +  
Sbjct: 195 KNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVMRRHHMNETVLQKAVRRS 254

Query: 277 ATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           A +AG+ K+   H +R   AT   + GA    +    G   V   + YT   DR
Sbjct: 255 AQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHVLDR 308


>gi|309778493|ref|ZP_07673388.1| putative site-specific recombinase, phage integrase family
           [Erysipelotrichaceae bacterium 3_1_53]
 gi|308913748|gb|EFP59593.1| putative site-specific recombinase, phage integrase family
           [Erysipelotrichaceae bacterium 3_1_53]
          Length = 352

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 52/317 (16%), Positives = 105/317 (33%), Gaps = 49/317 (15%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVE---- 124
           TL+  +  Y K     S   N+  SF SY    I    GD+    I    +++ V     
Sbjct: 27  TLEEWLFYYLKHFVKPSSKPNTYASFRSYICSHICPLLGDYALCDICEAVLQAYVNIKYE 86

Query: 125 ------SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
                     +  +  + +T +R+ FK A++   ++ +PC  VE PK   + +   + ++
Sbjct: 87  NGRLDGKGGLSVKTLKEHITVLRLAFKRAIQLGIISYDPCRCVEYPKEVKKEVSVLSVQE 146

Query: 179 MQQFKSFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHL------------------- 217
            +   +  S   +    L     L++GLR  +     +  +                   
Sbjct: 147 QENLTTAISPVYRENSMLPVLIALHAGLRIGEVSALRIDDICLSKRVIRVDESLNRVMTY 206

Query: 218 -QNNIFS----IKTQKTGTIITVELPDGFMKLL---------AMTPIGKETFFINNDKQK 263
            ++         ++ K+  +  V + +     L          +        F  +    
Sbjct: 207 EEDGTIHCPLLYQSTKSSRVRRVPMNETLYAALNVYLATMPKQLKADEHAPLFRTSGGNV 266

Query: 264 MNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-T 321
           M   + +  F     +A +     H +R   AT + +AG       A  G  +    E  
Sbjct: 267 MEPRRITYHFHKLLERAEIQGIHFHSLRHTFATRALEAGIPMKYCSAMLGHASTAITENL 326

Query: 322 YTKGA-DRIRLGIKNSR 337
           Y   + D+++  IK   
Sbjct: 327 YAHASEDQLKKEIKKLD 343


>gi|307290990|ref|ZP_07570879.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX0411]
 gi|306497947|gb|EFM67475.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX0411]
          Length = 387

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 59/341 (17%), Positives = 109/341 (31%), Gaps = 48/341 (14%)

Query: 50  ALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF 109
           AL     + E     +    T + +   + ++        +   +   +   I    G  
Sbjct: 48  ALARLEMEIERNGIKQSSSITFQEIAVMWLENYKNTVKDSSYSRTNIIFNKHIFPHFGKI 107

Query: 110 DYRKITTKHIRSGVESRKHTPSSAIQ--FLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167
           +  KI T + +  V +     +S     FL  M  +FK+A+     A NP  +V  PK K
Sbjct: 108 EIAKINTAYCQKVVNNWHTNGTSKQYPLFLNYMNKVFKFAISMGVTAENPTTNVIIPKNK 167

Query: 168 TEGIRPWTK------EDMQQFKSFW--------SEGSQPRLAFEFLLYSGLRCSDSCRAG 213
                  TK      + +Q+F                +    F  L +SG R  +     
Sbjct: 168 ETANPKDTKIKFYNKDQLQKFLECIHQQPQENNYITLRDYTLFRLLAFSGCRIGELLALT 227

Query: 214 VQHLQNNIFSIK---------------TQKTGTIITVELPDGF-MKLLAMTPIGKETFFI 257
              L      ++               T KT     + + D   ++ L      ++ F  
Sbjct: 228 WDDLNLKTGELQINKTVTKSDTYYVSSTPKTKKSNRIIILDRITLECLKKWRSEQKKFLF 287

Query: 258 -----------NNDKQKMNA-TQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATA 304
                       ND  +       +  +K    KA + N   HG R   A++  +AGA  
Sbjct: 288 KLGFTQPSRIFTNDSNEFTINQSVTERYKIYQKKANLPNIGLHGFRHTHASLLYNAGADH 347

Query: 305 HELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVVD 344
            E+    G   +    +TYT   D  +     + ++++ + 
Sbjct: 348 KEVQERLGHANIKTTLDTYTHLTDDRK--EVTTEKLANYIG 386


>gi|239907829|ref|YP_002954570.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
 gi|239797695|dbj|BAH76684.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
          Length = 366

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 42/271 (15%), Positives = 89/271 (32%), Gaps = 24/271 (8%)

Query: 71  LKWLISEYRKSAHWGSLAV-NSRISFESYFDQIIRKSGDFDYRKIT-TKHIRSGVESRKH 128
            K L  +Y +          N++   +   +Q     GD    ++T    +   ++  ++
Sbjct: 82  FKDLADKYIEHLEVSGRTETNTKKLKKMIENQFNPLIGDKVVNEMTYVDDMVPFIKIFQN 141

Query: 129 TPS---------SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
           TP          +  ++   +  +F + V      +NP     + K K   I+  T ED+
Sbjct: 142 TPGKSGKPRSQLTVNRYGDYVNAIFNFGVAMGLTKVNPMRGRRKSKEKPREIQ-LTVEDI 200

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSD--SCRAGVQHLQNN--IFSIKTQKTGTIITV 235
           ++        S  R A E     G R  +        +H+     +  I   KT T   V
Sbjct: 201 KRIMECAE--SHIRWAMEVCFNLGTRPGESELLALKWEHIDFEKSVARIYASKTKTYRIV 258

Query: 236 ELPDGFMKLLA-MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292
            +    ++ +          + ++   +++   +    F+    +A +N     + +R  
Sbjct: 259 PISAKLLEKMRSRMAESTSGYVVDYRGERIGMIRKG--FRGACQRAKINYPVRMYDLRHL 316

Query: 293 SATISADAGATAHELMATYGWKTVD-QAETY 322
            AT     GA    +    G   +      Y
Sbjct: 317 FATTMLSKGADLAAVSKLLGHSMISTTTSHY 347


>gi|302537732|ref|ZP_07290074.1| predicted protein [Streptomyces sp. C]
 gi|302446627|gb|EFL18443.1| predicted protein [Streptomyces sp. C]
          Length = 415

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 65/369 (17%), Positives = 113/369 (30%), Gaps = 62/369 (16%)

Query: 13  KERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           +ERT        +R      +R           A++    G+  +R     PR    T+ 
Sbjct: 21  RERTARYGKGSRYRVAGIPGVRGMSFDTLEDAKAWLR-RAGTDSERGEFVDPRDGSITVA 79

Query: 73  WLISEYRKSAHWGSLAVNS-RISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--T 129
             I+ + ++   G  A  + +   E     ++   GD   R +T   +R  +   +    
Sbjct: 80  DYIARHWQAGVRG--APGTVKRVDERVRLHVLPHLGDVALRDVTASVLRGYIAMLEAECA 137

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINP--CLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           P  A Q LT++  +F+ A+  + +  NP    SV  PK   +    W  E  Q+ +   +
Sbjct: 138 PRYARQILTTLSNVFETAIDDKRLVRNPMRAKSVRWPKAPEDQREAWLLETAQRVRD--A 195

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ-------------KTGTI 232
              + R+A    L  GLR  +        +     +  ++ Q             K G  
Sbjct: 196 INQRYRIAVVVALGCGLRQGEVFGLSPADIDFERGLIRVRRQVQLLYGRLYFTLPKGGKT 255

Query: 233 ITVELPDGFMKLLAM-----------TPIGK----------ETFFINNDKQKMNATQF-S 270
             V++P      L              P G                      + A  F  
Sbjct: 256 RVVDMPPSVAAELRAHFLQLPAVEVELPWGGPEPDREKRSFPLVLTTTYGNAIRANIFND 315

Query: 271 IWFKAKATKAGV--------------NKSAHGVRKFSATISADAGATAHELMATYGWKTV 316
             +K    KAGV                  H +R   A++  +AG     L    G  + 
Sbjct: 316 EVWKPALAKAGVIPVREKGQRWKASRKDGFHVLRHTYASVILEAGEFVVTLARWLGHSSP 375

Query: 317 DQA-ETYTK 324
               + Y  
Sbjct: 376 TITLDHYAH 384


>gi|255015532|ref|ZP_05287658.1| putative bacteriophage integrase [Bacteroides sp. 2_1_7]
          Length = 371

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 40/216 (18%), Positives = 75/216 (34%), Gaps = 12/216 (5%)

Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
            +      + + +SA  + ++ R   K   R   +  N    +E+ + +       + E+
Sbjct: 145 AKQLRRDGQISKNSASGYWSTFRGFLKILYRNRMIKTNVNDFLEKIEPEDVAKEYLSVEE 204

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-----QNNIFSIKTQKTGTII 233
           +        +    + A  F   + LR SD      + +             TQKT T  
Sbjct: 205 LYCLAETPCKIPVLKTASLFSCLTSLRLSDILSLCWEEIVDFAAGGKCVHTITQKTKTED 264

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRK 291
            + + D  ++L+   P  K   F    K+           K     AG+ K  + H  R+
Sbjct: 265 IIPISDEALELIGYCPEKKGLVF-KGLKRSWTQQP----MKEWIRSAGITKNITFHSYRR 319

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
             AT+ A AG     + +    K++   + Y K  D
Sbjct: 320 TYATLQAAAGTDIRTIQSNMAHKSITTTQRYMKVVD 355


>gi|298244848|ref|ZP_06968654.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
 gi|297552329|gb|EFH86194.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
          Length = 970

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 43/313 (13%), Positives = 98/313 (31%), Gaps = 43/313 (13%)

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF----DQIIRKSGDFDYRKITT 116
            + PR    +++  I  Y ++   G     +    ++        ++ +       +IT 
Sbjct: 616 ASRPRGASLSIEQAIQAYLEAQRRGKRRPKTLEWHQTALHLFQQYLLTECQCDLIHQITE 675

Query: 117 KHIRSGVESRKHTPSSAIQFL---------TSMRVLFKWAVRQEYVAINPCLSVERPKRK 167
             ++      +  P++   F           S R   +W VRQ Y+   P + +  P  +
Sbjct: 676 AAVQGWFTFLRERPTARGMFRAAGTIASYARSARAFCQWLVRQRYLMRTPFVHLHVPHEE 735

Query: 168 TEGIRPWTKEDMQQFKSFWSEG-----------SQPRLAFEFLLYSGLRCSDSCRAGVQH 216
              +     E+ ++       G           ++ +     L  +G+R ++ C   +  
Sbjct: 736 PGFLHLVEPEEWERLLLACQPGGEKATGEDQAAARNQAVLWILAETGMRTAEVCGMRLSD 795

Query: 217 LQNNIFSIKTQKTGT-IITVELPDGFMKLLA---------------MTPIGKETFFINND 260
           +      ++ Q  G+    V L       L                   +G+E  F++  
Sbjct: 796 VDREQGRLRVQGKGSTQRWVPLGYEGFHYLCLYLDHHRLKAGQDVKRRRVGEEPLFLSKT 855

Query: 261 KQKMNATQFSIWFKAKATKAGVNKSAHG---VRKFSATISADAGATAHELMATYGWKTVD 317
              + +   ++ F     +AG+ +   G   +R   A      G     L    G +   
Sbjct: 856 GHPLTSNGIALLFGRLRKQAGITRKEVGPVLLRDTFAVRYLQEGGDLLTLRQQLGQEESA 915

Query: 318 QAETYTKGADRIR 330
             + +   + R R
Sbjct: 916 VVKRHLGMSYRKR 928


>gi|293402584|ref|ZP_06646711.1| integrase/recombinase, phage integrase family [Erysipelotrichaceae
           bacterium 5_2_54FAA]
 gi|291303976|gb|EFE45238.1| integrase/recombinase, phage integrase family [Erysipelotrichaceae
           bacterium 5_2_54FAA]
          Length = 327

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 36/264 (13%), Positives = 85/264 (32%), Gaps = 14/264 (5%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES----RK 127
           +  I  +  +      +  S   + S    ++ +  + + ++ITT  IRS +      + 
Sbjct: 50  QNFIDLFLAAKRIEGCSEKSLKYYNSTIHAMLERL-NKNVKEITTDDIRSYLTEYQSNKN 108

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            +  +       +   F W   ++Y+  +P   + + K  +     ++ E ++  +   +
Sbjct: 109 SSRVTIDNIRRILSSFFSWLEDEDYILKSPVRRIHKVKTVSNIKETYSDETLELIRDNCN 168

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG-----FM 242
           E  +     + L  +G+R  +        +            G    V   D        
Sbjct: 169 E-IRDLALIDLLASTGMRIGELVLLNRNDINFYERECVVFGKGDKERVVYFDARAKIHLK 227

Query: 243 KLLAMTPIGKETFFIN--NDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISAD 299
             L          F+       ++         +    + G++K   H  R+  AT++ D
Sbjct: 228 NYLDSRTDDNNALFVTLKAPFNRITIGGIETRLRTLGKQLGLSKVHPHKFRRTLATMAID 287

Query: 300 AGATAHELMATYGWKTVDQAETYT 323
            G    +L    G + +D    Y 
Sbjct: 288 KGMPIEQLQQLLGHRRIDTTLQYA 311


>gi|261367877|ref|ZP_05980760.1| putative transposase [Subdoligranulum variabile DSM 15176]
 gi|282570685|gb|EFB76220.1| putative transposase [Subdoligranulum variabile DSM 15176]
          Length = 411

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 47/344 (13%), Positives = 94/344 (27%), Gaps = 71/344 (20%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVE 124
               T+ ++   Y K     +L   +R ++   +D+ +R   G+     I    +     
Sbjct: 68  AGKATVNFVFDRYMKLKA--NLRQTTRSNYLYMYDRFVRNTFGNKKIADIRFSDVLQFYN 125

Query: 125 SRKHTPSSAIQFLTSM----RVLFKWAVRQEYVAINPCLSV-ERPKRKTEGI----RPWT 175
                    I  L S+    R  F+ AVR   +  NP   V    K+ ++         T
Sbjct: 126 CLLQQQEMQINTLESIHTLLRPTFQLAVRDGIIRNNPTDGVLAEVKKNSDQHSGIRHALT 185

Query: 176 KEDMQQFKSF---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSI------ 224
               + F                F  LL +G R  ++     + +   N +  I      
Sbjct: 186 VAQQRAFMEHVANHPVYFHWWPLFTILLGTGCRIGEALGLRWEDIDCENRMIHINHSLVY 245

Query: 225 --------------KTQKTGTIITVELPDGFMKLLAMTPIG--------------KETFF 256
                         K +      T+ + D       M                      F
Sbjct: 246 YPVGESRTSVQHISKPKTKAGERTIPMLDSVQDAFEMLREEQLENGWNDVEIDGMHGFIF 305

Query: 257 INNDKQKMNATQFSIWFK--------------AKATKAGV---NKSAHGVRKFSATISAD 299
            N      N    +   K               +  +  +   + SAH +R    T   +
Sbjct: 306 CNRFGNVPNPQSVNRAIKRIVSDYNATEEISAKREHREAILLPDFSAHHLRHTFCTRLCE 365

Query: 300 AGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSV 342
                  + +  G K +    + Y +  +  +   ++  R+++ 
Sbjct: 366 QETNLKVIQSVMGHKDIKTTMDVYAEATEEKK--QESFERLAAT 407


>gi|150003856|ref|YP_001298600.1| putative integrase, tyrosine type site-specific recombinase
           [Bacteroides vulgatus ATCC 8482]
 gi|149932280|gb|ABR38978.1| putative integrase, tyrosine type site-specific recombinase
           [Bacteroides vulgatus ATCC 8482]
          Length = 372

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 42/270 (15%), Positives = 87/270 (32%), Gaps = 22/270 (8%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQII--RKSGDFDYRKITTKHIRSGVESRKH--T 129
           LI +Y  + H        +    +    +    +        +T     + +E  +    
Sbjct: 97  LIGQYLDTYH-----KKDKKMVRACITHLRLFTRKKSLPITLLTKDFCINFLEYLRDHLR 151

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            ++ I +    ++     + ++ +  NP   +   +         + +++Q+        
Sbjct: 152 GNTPIGYFKKFKMCINKCIEKKLMTSNPTDGIRLMQFDEVTKAILSLKEIQKLAITPCPN 211

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQK-----TGTIITVELPDGFM 242
           ++ + AF F  Y GLR  D  +   + +   +N  +I  QK        I+ + L    +
Sbjct: 212 NEVKRAFLFSCYCGLRWCDVHQLQYKDIDFSSNRLTILQQKVQSHSKNAILHLNLNHTAI 271

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
           KLL       E                + W K    +A ++K  + H  R    T     
Sbjct: 272 KLLQRHKGINEELVFGLPSYSYTLRILNKWVK----RANIHKHITFHCARHSFITNIMAN 327

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIR 330
           GA      +  G  T    E Y    D ++
Sbjct: 328 GANIKTAASLAGHSTTRHTEKYVHIIDELK 357


>gi|146301359|ref|YP_001195950.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
 gi|146155777|gb|ABQ06631.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
          Length = 305

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 41/298 (13%), Positives = 95/298 (31%), Gaps = 51/298 (17%)

Query: 80  KSAHWGSLA---------VNSRISFESYFDQII-------RKSGDFDYRKITTKHIRSGV 123
           +S  +  LA          N +    + +  II        ++G    + +T+K     +
Sbjct: 6   QSKDFQRLAGAFDKFVKVRNYKQGRSNLYRNIITEFLIWLEQAGVSRMQNVTSKESVKYL 65

Query: 124 ESRKHTPSS------AIQFLTS---MRVLFK-WAVRQEYVAINPCLSVERPKRKTEGIR- 172
           E     P        A + +     ++ LF+ + +  + +       +     +T+  R 
Sbjct: 66  EYLTARPKKRGNGVLAEKTIKLHLFVQGLFQVYLLENKEIQN--IYYIPSVSGETQKPRN 123

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTG 230
             T E+++    + +E    +         GLR S+     ++ +     +  ++  K  
Sbjct: 124 ILTIEEIKLVYQY-AENEMEKALLSIAYGCGLRRSEIANLDLKDVSLIKGMIVVRQGKGN 182

Query: 231 TIITVELPDGFMKLLAMTPIGK------------ETFFINNDKQKMNATQFSIWFKAKAT 278
               V + D  ++ L      +            E FFIN+  ++      +        
Sbjct: 183 KRREVPMSDTVLEYLKKYIRNERPERLSGRNQNEEAFFINSRGRRSTGENLNEILSKMIE 242

Query: 279 KAGV------NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
           + G         + H +R   A   A+  A    + +  G   ++    Y    ++ R
Sbjct: 243 QTGKFELVQKEITLHCLRHSIAFHLAENNAGIDFIRSFLGHTQINTTYIYA-VQNKKR 299


>gi|323344149|ref|ZP_08084375.1| integrase [Prevotella oralis ATCC 33269]
 gi|323094878|gb|EFZ37453.1| integrase [Prevotella oralis ATCC 33269]
          Length = 407

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 80/227 (35%), Gaps = 25/227 (11%)

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQQFKSF 185
             + ++AI+ L + + +  +  +      +P  ++  + KR   G    T E++      
Sbjct: 178 GQSFNTAIKTLKTFKTIVIFGRKTGVFNHDPFFNIHFKTKRVDRGF--LTDEEIDAI--M 233

Query: 186 WSEGSQPRL-----AFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVE 236
             E +  RL      F F  ++GL   D       ++             QKT T   + 
Sbjct: 234 HKEFTTQRLVNVRVIFLFSCFTGLAYVDVANLTPANIITMDGKQWIVTTRQKTDTPSHIL 293

Query: 237 LPDGFMKLLAM--TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292
           L D    ++         +        Q+MN+     + K  A   G+NK  + H  R  
Sbjct: 294 LLDIPKMIIKKYEGKTKNDRLIPILSNQRMNS-----YLKEIADVCGINKNLTFHMARHT 348

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
           S T+S  AG     +    G  ++   + Y +  D      ++  R+
Sbjct: 349 SGTMSLSAGIPIESIAKMIGHASIASTQIYAQVTDNK--ISEDMDRL 393


>gi|314950374|ref|ZP_07853650.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0082]
 gi|313643325|gb|EFS07905.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0082]
          Length = 397

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 62/377 (16%), Positives = 106/377 (28%), Gaps = 59/377 (15%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
            ++ K     G   Y +          P P      P+            E       K 
Sbjct: 24  KYLYKYVDAFGNTKYVYAWRLTP--TDPTPKGKREKPSLRELEQQIRRDIEDGIDSTGKK 81

Query: 69  TTLKWLISEY-RKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRSGVESR 126
            T   L   Y +++A   ++  ++    E     +   K G      I     +      
Sbjct: 82  MT---LCQLYAKQNAQRANVKKSTMKQREQLMRLLKEDKLGARSIDTIKPSDAKEWALRM 138

Query: 127 KHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPC--LSVERPKRKTEGIRPWTKEDMQQ 181
           K      ++      S++  F  A++ + V  NP      E  +  T+     T+E  Q 
Sbjct: 139 KDKGFSYNTINNHKRSLKASFYIAIQDDCVRKNPFDFKLNEVLENDTKEKVALTEEQEQA 198

Query: 182 FKSFWSEGSQPRLAFE---FLLYSGLRCSDSCRAGVQHLQ----------------NNIF 222
             SF    +     ++    LL +GLR S+ C   V  +                    +
Sbjct: 199 LLSFIKTDNVYHKHYDDVLILLKTGLRISELCGLTVADIDFKNEVVIIDHQLLKSKEQGY 258

Query: 223 SIKTQKTGTIIT-VELPDG--------FMKLLAMTP----IGKETFFINNDKQKMNATQF 269
            I+T KT + I  V L             K     P          F+N+  +   A  +
Sbjct: 259 YIETPKTKSGIRQVPLSRETIQAFQRVMKKHPKAEPFVIDGRSNFLFVNHKGKPKVAIDY 318

Query: 270 SIWFKAKATKAGVNK--------SAHGVRKFSATISADAGATAHELMATYGWKTVD---- 317
           +  F     K   +         + H +R    T  A       +L    G   +     
Sbjct: 319 NALFVRMIKKYNKHHKDNPLPHITPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISITMN 378

Query: 318 ---QAETYTKGADRIRL 331
               A   T  ++  RL
Sbjct: 379 WYAHASIDTAKSEVQRL 395


>gi|313898826|ref|ZP_07832360.1| site-specific recombinase, phage integrase family [Clostridium sp.
           HGF2]
 gi|312956408|gb|EFR38042.1| site-specific recombinase, phage integrase family [Clostridium sp.
           HGF2]
          Length = 397

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 61/359 (16%), Positives = 110/359 (30%), Gaps = 54/359 (15%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRL-PYPHESTFIPAYMSALTGSTPKREYINSPRKK 67
            ++ K     G   Y +        RL P           +S        ++ +      
Sbjct: 24  KYLYKYVDAFGNTKYVYAW------RLTPTDVTPKGKRHVISLREKEEQIKKDLLDGIDS 77

Query: 68  PTTLKWLISEY-RKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRSGVES 125
                 L   Y +++A   ++  +++   E     +   K G      I     +     
Sbjct: 78  TGKKMTLCQLYAKQNAQRANVKKSTQKQREQLMRLLKEDKLGARSIDTIKPSDAKEWALR 137

Query: 126 RKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPC--LSVERPKRKTEGIRPWTKEDMQ 180
            K      ++      S++  F  A++ +YV  NP      E  +  T+G    T+   Q
Sbjct: 138 MKEKGFSYNTINNHKRSLKASFYIAIQDDYVRKNPFDFKLNEVIEDDTKGKVALTEGQEQ 197

Query: 181 QFKSFWSEGSQPRLAFE---FLLYSGLRCSDSCRAGVQHLQ----------------NNI 221
              SF    +     ++    LL +GLR S+ C   V+ +                    
Sbjct: 198 ALLSFIKIDNVYHKYYDDVLILLKTGLRISELCGLTVKDIDFKNEIVHIDHQLLKSKEQG 257

Query: 222 FSIKTQKTGTIIT-VELPDG----FMKLLAMTPIGKET--------FFINNDKQKMNATQ 268
           + I+T KT + I  V L +     F +++   P  K T         FIN+  +   A  
Sbjct: 258 YYIETPKTKSGIRRVPLSEETIKAFQRVIKSRPKTKPTQVDGHSDFVFINHKGKPKVAID 317

Query: 269 FSIWFKAKATKAGVNK--------SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
           +S  F     K   +         + H +R    T  A       +L    G   +   
Sbjct: 318 YSTLFVRMVKKYNKHHKDNPLPHITPHILRHTFCTKMAHRNINPKDLQYIMGHSNISIT 376


>gi|309803940|ref|ZP_07698024.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 11V1-d]
 gi|308164035|gb|EFO66298.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 11V1-d]
          Length = 373

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 65/363 (17%), Positives = 121/363 (33%), Gaps = 36/363 (9%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHE--STFIPAYMSALTGSTPKREYINS-PR 65
             V K  T+ G I Y F+   G  I         S F     +       K E ++S  +
Sbjct: 6   KRVEKYETKKG-IRYRFKTYVGTDINGKKIWATRSGFTSYTEAKYELDKLKLEGVDSFVK 64

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
           +K   +  L +++  +         +  ++E Y   I  K G+    KIT   ++    +
Sbjct: 65  QKQIKVNDLFTQWFDTYQTTVKVSTAHKTYEMYKIHIKPKYGNAYVDKITPASLQRFSNA 124

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-----PWTKEDMQ 180
                      L  +       +   Y+ +NP   +  PK+ T   R       ++E++ 
Sbjct: 125 LSKKLVKYRTALGILERTLNLGISLGYLKVNPFSKILIPKKTTRKRRDTSINFLSREELD 184

Query: 181 QFKSFW-SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT---------- 229
            F     S      L F  L  +GLR  ++       +  N   I   KT          
Sbjct: 185 TFLKKAESINHLYYLFFLLLASTGLRKGEALALHWSDIDFNTNQISVTKTLAYGLDNKYI 244

Query: 230 -------GTIITVELP----DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF-KAKA 277
                   ++ TV L     +  +K      I  E  F   D   +  ++ + W      
Sbjct: 245 VQTPKSPKSLRTVPLSTHLKEELLKYKDNQKIDTEIIFHTIDGNYLRLSKPTRWLDTIYK 304

Query: 278 TKAGVNK-SAHGVRKFSATISADAG--ATAHELMATYGWKTVDQA-ETYTKGADRIRLGI 333
               + + + HG R   A++  ++       ++ A  G +TV+     YT   ++ +  +
Sbjct: 305 QLPDLKRITTHGFRHTFASLLIESNPYIKPSDVQAILGHETVEMTLNIYTHVTNQSKKKV 364

Query: 334 KNS 336
             S
Sbjct: 365 AQS 367


>gi|254883530|ref|ZP_05256240.1| integrase [Bacteroides sp. 4_3_47FAA]
 gi|254836323|gb|EET16632.1| integrase [Bacteroides sp. 4_3_47FAA]
          Length = 371

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 40/216 (18%), Positives = 76/216 (35%), Gaps = 12/216 (5%)

Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
            +      + + +SA  + ++ R   K   R   +  N    +E+ + +       + E+
Sbjct: 145 AKQLRRDGQISKNSASGYWSTFRGFLKILYRNRMIKTNVNDFLEKIEPEDVAKEYLSVEE 204

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-----QNNIFSIKTQKTGTII 233
           +        +    + A  F   + LR SD      + +             TQKT T  
Sbjct: 205 LYCLAETPCKIPVLKTASLFSCLTSLRLSDILSLCWEEIVDFAAGGKCVHTITQKTKTED 264

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRK 291
            + + D  ++L+  +P  K   F    K+           K     AG+ K  + H  R+
Sbjct: 265 IIPISDEALELIGYSPEKKGLVF-KGLKRSWTQQP----MKEWIRSAGITKNITFHSYRR 319

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
             AT+ A AG     + +    K++   + Y K  D
Sbjct: 320 TYATLQAAAGTDIRTIQSNMAHKSITTTQRYMKVVD 355


>gi|191638912|ref|YP_001988078.1| Integrase homolog [Lactobacillus casei BL23]
 gi|190713214|emb|CAQ67220.1| Integrase homolog [Lactobacillus casei BL23]
 gi|327382965|gb|AEA54441.1| hypothetical protein LC2W_2109 [Lactobacillus casei LC2W]
 gi|327386149|gb|AEA57623.1| hypothetical protein LCBD_2127 [Lactobacillus casei BD-II]
          Length = 397

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 52/331 (15%), Positives = 108/331 (32%), Gaps = 37/331 (11%)

Query: 45  PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL-AVNSRISFESYFDQII 103
            AY   + GS  K   +    ++    K    E+     + +     +  S  S      
Sbjct: 47  KAYKEMVGGSVEK--VVAERDQQHIQFKQFWEEFFL-PWYKNQVKPQTYDSRRSSLKHF- 102

Query: 104 RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLT--SMRVLFKWAVRQEYVAINPCLSV 161
           +        KI    I+          S +   L    +  +F+ A+   ++  NP  +V
Sbjct: 103 KMFEHMYMDKIKPVDIQKWQNQMTCQVSKSYTRLVQCMLSRVFQRAIVLGFMNENPTKTV 162

Query: 162 ERPKRKTEGIRPWTKEDMQQ-FKSFWSEGSQPRLAFE---FLLYSGLRCSDSCRAGVQHL 217
              K+    +  WTKE+ +   K+F+ E       F    FL  +G+R  ++       +
Sbjct: 163 GNVKKVKNQVDFWTKEEFEAVIKTFYIEDFYQHFCFFTLWFLFMTGMRIGEATALQWDDI 222

Query: 218 QNNIFSIKTQKT-----------------GTIITVEL----PDGFMKLLAMTPIGKET-F 255
                +++  KT                  +  T+ L     +          +  +T F
Sbjct: 223 DFEEGTVRINKTLWLRSYTNYSFSTPKTKASNRTIPLDAKTLELLSDWKKAQALKCKTDF 282

Query: 256 FINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWK 314
            ++ +             K  A  AGV++   H +R   A++    G     +    G +
Sbjct: 283 VLSFNGVPTRRDLVMRIIKRHAALAGVHRIRVHALRHSHASLLISLGENPLVIKERLGHE 342

Query: 315 TVDQA-ETYTKGADRIRLGIKNSRRISSVVD 344
            +     TY        +  + ++R++ +V+
Sbjct: 343 DIQTTLGTYGHL--YPNMNFEAAKRLNGLVE 371


>gi|319938621|ref|ZP_08012999.1| integrase [Coprobacillus sp. 29_1]
 gi|319806186|gb|EFW02901.1| integrase [Coprobacillus sp. 29_1]
          Length = 379

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 61/378 (16%), Positives = 106/378 (28%), Gaps = 61/378 (16%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
            ++ K     G   Y +          P P      P+            E       K 
Sbjct: 6   KYLYKYVDAFGNTKYVYAWRLTP--TDPTPKGKREKPSLRELEQQIRRDIEDGIDSTGKK 63

Query: 69  TTLKWLISEY-RKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRSGVESR 126
            T   L   Y +++A   ++  +++   E     +   K G      I     +      
Sbjct: 64  MT---LCQLYAKQNAQRANVKKSTQKQREQLMRLLKEDKLGARSIDTIKPSDAKEWALRM 120

Query: 127 KHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPC--LSVERPKRKTEGIRPWTKEDMQQ 181
           K      ++      S++  F  A++ + V  NP      E  +  T+     T+E  Q 
Sbjct: 121 KDKGFSYNTINNHKRSLKASFYIAIQDDCVRKNPFNFKLSEIIENDTKEKVALTEEQEQA 180

Query: 182 FKSFWSEGSQPRLAFE---FLLYSGLRCSDSCRAGVQHLQ------------------NN 220
             SF    +     ++    LL +GLR S+ C   V  +                     
Sbjct: 181 LLSFIKTDNVYHKYYDDVLILLKTGLRISELCGLTVADIDFKNEVVVIDHQLLKSKEQGY 240

Query: 221 IFSIKTQKTGTIITVELPDG----FMKLLAMTPIGK--------ETFFINNDKQKMNATQ 268
                  K+GT   V L       F +++     GK        +  F+N       A  
Sbjct: 241 YIETPKTKSGTR-QVPLSRETIQAFQRVIRKRTKGKLIEIDGYKDFLFVNPKGNPKVAID 299

Query: 269 FSIWFKAKATKAGVNK--------SAHGVRKFSATISADAGATAHELMATYGWKTVD--- 317
           ++  F     K   +         + H +R    T  A       +L    G   +    
Sbjct: 300 YNALFVRMVKKYNKHHKDNPLPHITPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISITM 359

Query: 318 ----QAETYTKGADRIRL 331
                A   T  ++  RL
Sbjct: 360 NWYAHASIDTAKSEVQRL 377


>gi|240171150|ref|ZP_04749809.1| site-specific recombinase [Mycobacterium kansasii ATCC 12478]
 gi|296165403|ref|ZP_06847944.1| site specific recombinase XerD [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295899294|gb|EFG78759.1| site specific recombinase XerD [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 366

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 48/329 (14%), Positives = 93/329 (28%), Gaps = 53/329 (16%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII------- 103
           + G T  R    S  +           +         + ++  ++   FD I        
Sbjct: 1   MAGETRPRTPSPSRGRTDAQRPSWFRAFLTDRATRKPSPHTLQAYRQDFDAIASAITGAD 60

Query: 104 --RKSGDFDYRKITTKHIRSGVESRK--HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL 159
             +     D   +T   +R    +    H  +S  +  ++   L  +    E +  NP  
Sbjct: 61  PGQDLSRLDPLDLTKDALRQAFAAYAGSHEAASIRRCWSTWNTLCTYLYTTELLPGNPMQ 120

Query: 160 SVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----------QPRLAFEFLLYSGLRCSDS 209
            + +PK      R    E  +   +     +          + R      L +GLR ++ 
Sbjct: 121 VIGQPKPAKALPRSLPAEAAEALITAIEAPAANKRATDWPERDRAIILTALLAGLRAAEL 180

Query: 210 CRAGVQHL---QNNIFSIKTQKTGTIITVELPDGFMKLL-----------AMTPIGKE-- 253
             A +  L             K G   +V +    + +L             T  G+   
Sbjct: 181 RGANIGDLRLSDGGGVLRVRGKGGKHRSVPIEQALVDVLNSYLTTRAARFPATTRGRSGQ 240

Query: 254 ----------TFFINNDKQKMNATQFSIWFKAKATKAGVNKS------AHGVRKFSATIS 297
                       F+  D  ++               AG +         H +R   AT  
Sbjct: 241 NPRPQWPASAALFVGRDGARITRGALQYRVLRAFNLAGPDAQRTPGAMVHALRHTYATEL 300

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGA 326
           A A  + + LM   G +++  ++ Y   A
Sbjct: 301 AGANISVYTLMKLLGHESMATSQRYVTAA 329


>gi|114567760|ref|YP_754914.1| phage integrase [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
 gi|114338695|gb|ABI69543.1| phage integrase [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
          Length = 305

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 43/299 (14%), Positives = 95/299 (31%), Gaps = 57/299 (19%)

Query: 101 QIIRKSGDFDYRKITTKHIRSGVESR----------KHTPSSAIQFLTSMRVLFKWAVRQ 150
            I    G+    K+   H++     +            +  +       +      A+++
Sbjct: 6   HIKPAIGNIKLAKLHPHHLQKLYNDKIENGRHDGRGGLSARTVELIHIVLHSALSQAIKE 65

Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKED--MQQFKSFWSEGSQPRLAFEFLLYSGLRCSD 208
             V  N   + +RP+R+ + +R  T+E   +Q   +    G+    AF   L +G+RC +
Sbjct: 66  GLVVRNVSEATKRPRREKKEMRVLTEEQTRLQAVLNTERLGT----AFLVDLGTGMRCGE 121

Query: 209 SCRAGVQHLQNNIFSIKTQ----------------------KT-GTIITVELPDGFMKLL 245
                 +++  N   I+ Q                      KT  +  ++ +P   +  L
Sbjct: 122 LLALKWENVDLNEGVIRVQQSLTRIRVEDSSLKTELRFQPLKTVKSRRSIPIPQSVIAAL 181

Query: 246 AMTPIGKE--------------TFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVR 290
                 +                 F     Q ++    +  F     +AG+ K + H +R
Sbjct: 182 KSHKSRQNQEKLKAGAAYNDLGLVFCTELGQPIDPRNLTRTFNRLLERAGIPKATLHSMR 241

Query: 291 KFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVVDSDDP 348
              AT   +       +    G   +    +TY+     I+       ++  ++ +  P
Sbjct: 242 HSYATRLLEMNEHPKVVQELMGHSQISMTLDTYSHVMPEIKQAAAA--KLDDLLITKSP 298


>gi|317473501|ref|ZP_07932793.1| phage integrase [Anaerostipes sp. 3_2_56FAA]
 gi|316899012|gb|EFV21034.1| phage integrase [Anaerostipes sp. 3_2_56FAA]
          Length = 369

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 49/291 (16%), Positives = 89/291 (30%), Gaps = 45/291 (15%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH 128
           TL+     Y        L  N+ ++ ES    +I+   G     +IT K +       + 
Sbjct: 57  TLESFCKLYEADVR-PRLKENTWLTKESIIQSKILPYLGQRKVSEITAKDVIDWQNEMRS 115

Query: 129 ---------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV-ERPKRKTEGIRPWTKED 178
                    +P+        +  +F  A+R   ++INP          +++ +  WTKE+
Sbjct: 116 QKGKTGKPVSPTYLKTIHGQLSSIFNHAIRYYDLSINPARKAGTMGAEESKEMLFWTKEE 175

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-----------------NNI 221
             +F     +      AFE L + G+R  +                            ++
Sbjct: 176 YLKFAEAMMDKPLSYYAFEMLYWCGIREGELLALTPADFDFHNQTVAINKSYQRLKGRDV 235

Query: 222 FSIKTQKTGTIITVELPDGF-------MKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274
            +    K    + V++P          MKL          F        +     S    
Sbjct: 236 ITSPKTKKSNRV-VKMPQFLSEEMEDCMKLYYSLKSTDRLF-------PVTKHYLSHEMD 287

Query: 275 AKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
                AGV +   H +R    ++  D G TA  +    G ++      Y  
Sbjct: 288 RGCKAAGVKRIRIHDLRHSHVSLLIDMGFTALAIGDRVGHESEKITYRYAH 338


>gi|282598730|ref|YP_003358821.1| phage integrase protein [Enterococcus phage phiEf11]
 gi|300861304|ref|ZP_07107391.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TUSoD Ef11]
 gi|307290877|ref|ZP_07570768.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0411]
 gi|258598100|gb|ACV83357.1| phage integrase protein [Enterococcus phage phiEf11]
 gi|300850343|gb|EFK78093.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TUSoD Ef11]
 gi|306498077|gb|EFM67603.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0411]
          Length = 378

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 62/367 (16%), Positives = 118/367 (32%), Gaps = 62/367 (16%)

Query: 18  HGKIIYYFRKGHG---RRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR-KKPTTLKW 73
           +GK  Y+ R       +  R+     S    A   A+     K       + +K  +L+ 
Sbjct: 8   NGKYKYFERYKDPYTEKYRRVSVTLNSKSNQAKKQAMMELQDKINNRMEKKDQKKVSLEN 67

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG-DFDYRKITTKHIRSGVESRKHTPSS 132
           L++ + +     S+   S  ++      I      D   R   TK  +  +    H+   
Sbjct: 68  LLNSWWQQHQ-LSIRKTSVKAYGKILKYIFSNMNVDVLIRNTDTKFFQDFINDLPHSWEY 126

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG--- 189
             +F + + + F +A     +  NP   V+  K       P TKE+ +  +S + E    
Sbjct: 127 KKKFKSVLNMSFTYAQDMGMIDENPINRVKVVK------PPLTKENFENIESKYLEEREV 180

Query: 190 --------------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------ 229
                            RLA EF+  +GLR  ++    +     N  +I    T      
Sbjct: 181 YQLLSYYYSTFQSVHHGRLA-EFMYLTGLRAGEAISLTINDYVKNEHAILVNGTLDYSNG 239

Query: 230 ------------GTIITVELPDGFMKLLAMTPIGKE--------TFFINNDKQKMNATQF 269
                        +   VEL +  ++++    + +E          F+      +    F
Sbjct: 240 YKNATKELPKTLASFRKVELSNRAVEIIEELILEREIKFKEQTNYLFVGKTGNPIQVNSF 299

Query: 270 SIWFKAKATKAGVNK-----SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYT 323
           +   K      G NK     S+H  R    ++ A+       +M   G    +   + YT
Sbjct: 300 NASLKKANESLGKNKINKTISSHIFRHSHISLLAELNVPVKAIMERVGHVDTETTLKIYT 359

Query: 324 KGADRIR 330
               + +
Sbjct: 360 HVTKKAK 366


>gi|268680614|ref|YP_003305045.1| integrase family protein [Sulfurospirillum deleyianum DSM 6946]
 gi|268618645|gb|ACZ13010.1| integrase family protein [Sulfurospirillum deleyianum DSM 6946]
          Length = 359

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 55/330 (16%), Positives = 107/330 (32%), Gaps = 34/330 (10%)

Query: 15  RTRHGKIIYYFRKGHGRRIR-LPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
           ++R G +   F       +R L               L     ++      +K P T+  
Sbjct: 4   KSRDGNLYVRFFVEDREIVRSLKLEDTKKNRTLAKKVLFPELARKIASGEYKKVPKTV-- 61

Query: 74  LISEYRKSAHWGSLAVNSRISFESY---FDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
               Y  S  + +L  N   S+       + I +  GD     IT  +I+  + S K   
Sbjct: 62  ---RYY-SQKYLALQEN-MKSYRYVECRVEAINKAFGDKTIDSITKLNIKEWLNSFKIKN 116

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
            S   +L +++ +F+ A   E +A N    V   + +     P+++E++ +  ++ ++  
Sbjct: 117 ISKKNYLVALKGIFQVAYDDEVIAKNIASEVSIGRYEQVEADPFSEEEVSRLLAYANDEF 176

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-----------KTGTIIT-VELP 238
           +  L   F   +G+R  +     +Q +  +  SIK             KT   I  + + 
Sbjct: 177 KNYLGIAF--NTGMRIGEILGLMLQDIDEDSISIKRAVSRNSKEPTTPKTQKSIRKIPIL 234

Query: 239 DGFMKLLA---MTPIGKET--FFINNDKQKMNATQ---FSIWFKAKATKAGVNKSAHGVR 290
           D     L         K T   F++    K           W          ++  +  R
Sbjct: 235 DACRPYLEDQIRRAREKRTMFLFMSEVTGKFYHDADALKKKWLSVLKRSKVRHRKLYNTR 294

Query: 291 KFSATISADAGA-TAHELMATYGWKTVDQA 319
              AT    +G  +   +    G       
Sbjct: 295 HTFATAMLRSGKVSVLTVAKMLGHTNSKMV 324


>gi|187734218|ref|YP_001880036.1| site-specific recombinase, phage integrase family [Shigella boydii
           CDC 3083-94]
 gi|187431210|gb|ACD10484.1| site-specific recombinase, phage integrase family [Shigella boydii
           CDC 3083-94]
          Length = 376

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 62/376 (16%), Positives = 115/376 (30%), Gaps = 62/376 (16%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKR-------- 58
           L P+  K   R+ K+ + +R     +       +        +       ++        
Sbjct: 14  LSPYFDK---RNNKVYWRYRHPITGKNHGLGSIDQKLAETIAAEANSRLARQQMEQMLSL 70

Query: 59  -EYINSPRKKPTTLKWLISEYRKS----AHWGSLAVNSRISFESYFDQIIRKSGDFDYRK 113
            E I S     +T+   ++ YRK        G + +N+     +       + G      
Sbjct: 71  QEKIISDTGGSSTVTIFLNNYRKIQQERYENGEIKLNTLKQKAAPLRVFDERFGTRRLDA 130

Query: 114 ITTKHIRSGVESRKHTPSSAIQ--FLTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTE 169
           IT K + S +E  K    + +   F   +  +F+ A +   V    NP  S ++P+ +  
Sbjct: 131 ITVKDVVSVLEEYKARGHNRMGQIFRKVLIDVFREAQQTGDVPPGFNPAESAKKPQVRIS 190

Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229
             R    E M  + +   +G   +      L +G R SD C+     +++    ++ QKT
Sbjct: 191 RQRLTFDEWMMIYNAAEKDGYFLQRGMLLALMTGQRLSDICKMQFSDIRDGYLHVEQQKT 250

Query: 230 GTIITVE-----------------------LPDGFMKLLAMTPIGKETFFINNDKQKMNA 266
           GT I +                        L    +         K           +  
Sbjct: 251 GTRIAIPLALRCDKLNLTLDDVVSSCRDCVLSPWLLHHHHAKGTAK-------RGGMVKP 303

Query: 267 TQFSIWFKAKA-------TKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
              ++ FK             G   S H  R  S  +  + G     L    G       
Sbjct: 304 ATLTVAFKKARDSVDYNWRANGTPPSFHEQRSLSERLFREQGVDTKIL---LGHSNQKMT 360

Query: 320 ETY--TKGADRIRLGI 333
           + Y   +G +  +L I
Sbjct: 361 DIYNDARGKEWKKLVI 376


>gi|270157627|ref|ZP_06186284.1| phage integrase family site-specific recombinase [Legionella
           longbeachae D-4968]
 gi|269989652|gb|EEZ95906.1| phage integrase family site-specific recombinase [Legionella
           longbeachae D-4968]
          Length = 412

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 56/293 (19%), Positives = 119/293 (40%), Gaps = 30/293 (10%)

Query: 56  PKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT 115
           PK +     +K+ +T+K LI  +  +      A   +I      D II   G+     + 
Sbjct: 83  PKEQIAEQKQKEQSTVKNLILHWYTNYIEKHRAQPLQIWQHIKVD-IIPLLGNKKLEHLK 141

Query: 116 TKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL--------SVERPK 165
           T+ I   ++    + +P  A + L++++  F +AV +  + +NP +         +E+P+
Sbjct: 142 TREITQALDKIVGRGSPVHANKVLSTLKQAFNYAVSRGEMLVNPAMTIRARDIGGIEKPR 201

Query: 166 RKTEGIRPWTKEDMQ---QFKSFWSEGS--QPRLAFEFLLYSGLRCSDSCRAGVQ--HLQ 218
                 R  + ++++   QF      G+  Q R A + +L +G+R  +   A       +
Sbjct: 202 E-----RYLSLDEVKTLWQFLDSEEHGTSFQIRAALKIILLTGVRTGEIRVAKWSEFDFE 256

Query: 219 NNIFSIKTQ--KTGTIITVELPDGFMKLLAMTPIGKET--FFINNDKQKMNATQF--SIW 272
           N++++I  +  KT  ++ + L +   K+L     G ++       D Q + + +      
Sbjct: 257 NSLWTIPAENTKTNIVMRIHLTELTKKVLRELKAGSDSEYVITGADGQSILSDRAMPRAV 316

Query: 273 FKAKATKAGVNKSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTK 324
            + ++     + +AH +R+  AT            +    G K      TY K
Sbjct: 317 IRIQSRVGIPHWTAHDLRRTFATQLGQTLNVDPVVIEKCLGHKMPKIMATYNK 369


>gi|160936304|ref|ZP_02083674.1| hypothetical protein CLOBOL_01197 [Clostridium bolteae ATCC
           BAA-613]
 gi|158440773|gb|EDP18504.1| hypothetical protein CLOBOL_01197 [Clostridium bolteae ATCC
           BAA-613]
          Length = 366

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 51/291 (17%), Positives = 90/291 (30%), Gaps = 46/291 (15%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVES---- 125
            K  ++ Y K A    L   +  +    F++ ++   G+     I    IR+        
Sbjct: 58  FKDFVALYMKDAD-PRLRETTLANKHYLFNKKVLPYFGEMPINAIKPTDIRNWQNELINY 116

Query: 126 -----RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV-ERPKRKTEGIRPWTKEDM 179
                R ++P+        +   F +AV+   +  NPC       K+  + +  WT E+ 
Sbjct: 117 RRPNGRGYSPTYLRTINNQLTAAFNFAVKFYGLRENPCHKAGTMGKKNADEMLFWTNEEF 176

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-------- 231
           + F             F  + Y+GLR  +      + +  +   I   K           
Sbjct: 177 KVFIKAMESRPVGYTVFMVMYYTGLRVGELLALTPEDIDFDRHIISVNKNYQHLNGKDYI 236

Query: 232 ----------IITVE------LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKA 275
                      + +       L D   KL  + P  +   F        +        K 
Sbjct: 237 YPPKTEAGYREVVMPKVLESCLKDYLAKLYDVQPTDR--IF------PYDRGWVGRQMKY 288

Query: 276 KATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
               +G  K   H VR   A++  D G T   +    G + V    ETY+ 
Sbjct: 289 GCDHSGTQKIRVHDVRHTHASLLIDMGCTPLLVAERLGHERVQTTMETYSH 339


>gi|46358652|ref|YP_006360.1| Int [Enterobacteria phage ST104]
 gi|46357888|dbj|BAD15167.1| Int [Enterobacteria phage ST104]
 gi|312911293|dbj|BAJ35267.1| integrase [Salmonella enterica subsp. enterica serovar Typhimurium
           str. T000240]
          Length = 387

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 45/249 (18%), Positives = 89/249 (35%), Gaps = 34/249 (13%)

Query: 97  SYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAIN 156
              D+  RK+G                + +    ++    L+ ++ L + A  +E+  ++
Sbjct: 120 KLMDEACRKNGKQPPV----------FKPKPAAVATKATHLSFIKALLR-AAEREWKMLD 168

Query: 157 PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216
               ++ P+ K + IR     + ++      E  +     EF L +GLR S+      Q 
Sbjct: 169 KAPIIKVPQPKNKRIRWLEPHEAKRLIDECPEPLKS--VVEFALSTGLRRSNIINMDWQQ 226

Query: 217 LQNN----IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK----------- 261
           +           +  K+   I V L D   ++L    IG    ++   K           
Sbjct: 227 IDMQRKVAWIHPEQSKSNQAIGVALNDTACRVLKKQ-IGNHHKWVFVYKESSTKPDGTKS 285

Query: 262 ---QKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVD 317
              +KM     + W ++   +AG+ +   H +R   A+    AG     L    GW++++
Sbjct: 286 PVVRKMRYDANTAW-RSALKRAGIEDFRFHDLRHTWASWLVQAGVPISVLQEMGGWESIE 344

Query: 318 QAETYTKGA 326
               Y   A
Sbjct: 345 MVRRYAHLA 353


>gi|325696212|gb|EGD38103.1| phage integrase family prophage Sa05 [Streptococcus sanguinis
           SK160]
          Length = 386

 Score = 90.1 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 42/304 (13%), Positives = 96/304 (31%), Gaps = 39/304 (12%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           L   + +S            +    +  +I   G     K+   +I+  V          
Sbjct: 78  LADLWLESYQLTVKPQTFIATKRMVYSHLIPVFGKMKLDKLAASYIQGFVNDLSSHLVHF 137

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSV---ERPKRKTEGIRPWTKEDMQQFKSFWSE-- 188
               +    + K+ V  + +  NP   +    +PKR+ + I+  + ED++    +  +  
Sbjct: 138 GVVHSINSRILKYGVSLQLIPFNPARDIILPRKPKRENKSIKFISPEDLKTLLDYMEKLA 197

Query: 189 -----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242
                     + +  LL +G R  ++       +     +I   K    ++ +  P    
Sbjct: 198 FKKYSYFFDYMLYSVLLATGCRFGEAVALEWSDIDLENATISISKNYNRLVDLVGPPKSK 257

Query: 243 KLLAMTPIGKETF-------------------------FINNDKQKMNATQFSIWFKAKA 277
             + +  I ++T                          F    K+  N          + 
Sbjct: 258 AGVRVISIDRKTVNMLKLYKNRQRQLFIEDGARAPSVVFATPTKKYQNMATRQDSLDRRC 317

Query: 278 TKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK-GADRIRLGIK 334
            +AG+ + + H  R   A++  +AG +  EL    G  T+    + Y+    D+ +  + 
Sbjct: 318 KEAGIPRFTFHAFRHTHASLLLNAGISYKELQYRLGHATLAMTMDIYSHLSKDKEKEAVS 377

Query: 335 NSRR 338
              +
Sbjct: 378 YYEK 381


>gi|309778436|ref|ZP_07673351.1| transposase [Erysipelotrichaceae bacterium 3_1_53]
 gi|308913799|gb|EFP59624.1| transposase [Erysipelotrichaceae bacterium 3_1_53]
          Length = 397

 Score = 90.1 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 61/378 (16%), Positives = 106/378 (28%), Gaps = 61/378 (16%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
            ++ K     G   Y +          P P      P+            E       K 
Sbjct: 24  KYLYKYVDAFGNTKYVYAWRLTP--TDPTPKGKRDKPSLRELEQQIRRDIEDGIDSTGKK 81

Query: 69  TTLKWLISEY-RKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRSGVESR 126
            T   L   Y +++A   ++  +++   E     +   K G      I     +      
Sbjct: 82  MT---LCQLYAKQNAQRANVKKSTQKQREQLMRLLKEDKLGARSIDTIKLSDAKEWALRM 138

Query: 127 KHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPC--LSVERPKRKTEGIRPWTKEDMQQ 181
           K      ++   +  S++  F  A++ + V  NP      E  +  T+     T+E  Q 
Sbjct: 139 KDKGFSYNTINNYKRSLKASFYIAIQDDCVRKNPFDFKLSEVLENDTKEKVALTEEQEQA 198

Query: 182 FKSFWSEGSQPRLAFE---FLLYSGLRCSDSCRAGVQHLQ------------------NN 220
             SF    +     ++    LL +GLR S+ C   V  +                     
Sbjct: 199 LLSFIKTDNVYHKYYDDVLILLKTGLRISELCGLTVADIDFKNEVVIIDHQLLKSKEQGY 258

Query: 221 IFSIKTQKTGTIITVELPDG----FMKLLAMTPI--------GKETFFINNDKQKMNATQ 268
                  K+GT   V L       F +++   P              F+N   +   A  
Sbjct: 259 YIETPKTKSGTR-QVPLSKETIQAFQRVMKKRPKTDPFVIDGRGNFLFVNPKGKPKVAID 317

Query: 269 FSIWFKAKATKAGVNK--------SAHGVRKFSATISADAGATAHELMATYGWKTVD--- 317
           +S  F     K   +         + H +R    T  A       +L    G   +    
Sbjct: 318 YSTLFVRMVKKYNKHHMDNPLPHITPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISITM 377

Query: 318 ----QAETYTKGADRIRL 331
                A   T  ++  RL
Sbjct: 378 NWYAHASIDTAKSEVQRL 395


>gi|300923563|ref|ZP_07139594.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 182-1]
 gi|300420171|gb|EFK03482.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 182-1]
          Length = 337

 Score = 90.1 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 43/207 (20%), Positives = 79/207 (38%), Gaps = 10/207 (4%)

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDM 179
           +   S+   PSS  + LT +  +F   +  E Y   +P    +R K +       T+E++
Sbjct: 111 ATRRSQGIKPSSINRDLTCISGMFTALIEAELYFGEHPIRGTKRLKEEKPDTGYLTQEEI 170

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239
               +    G   ++A    L +G R  ++ R   +++ +N  +    KT    TV + +
Sbjct: 171 ALLLAALD-GDNKKIAI-LCLSTGARWGEAARLKAENIIHNRVTFVKTKTNKPRTVPISE 228

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISAD 299
              K++A    G    F + D  +   T      KA      + ++ H +R   AT    
Sbjct: 229 AVAKMIADNKRG--FLFPDADYPRFRRT-----MKAIKPDLPMGQATHALRHSFATHFMI 281

Query: 300 AGATAHELMATYGWKTVDQAETYTKGA 326
            G +   L    G   ++Q   Y   A
Sbjct: 282 NGGSIITLQRILGHTRIEQTMVYAHFA 308


>gi|189425308|ref|YP_001952485.1| TetR family transcriptional regulator [Geobacter lovleyi SZ]
 gi|189421567|gb|ACD95965.1| putative transcriptional regulator, TetR family [Geobacter lovleyi
           SZ]
          Length = 325

 Score = 90.1 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 45/315 (14%), Positives = 94/315 (29%), Gaps = 58/315 (18%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----SRKHT 129
           L+ + R        +  +   +  +  + I        +++  K I   +      R+  
Sbjct: 10  LLDQLRDRIRLKHYSRRTEDVYLDWAKRYILYHNKRHPQEMGKKEIEGFLTYLATERQVA 69

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            ++  Q   +++ L+K  +  +   ++     ++PKR        T++++    +   + 
Sbjct: 70  AATQNQAKAALQFLYKEVLEIQLPWLDEVEQAKKPKR---LPVVLTEKEVHSLLAHVPQ- 125

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELP----DGFMK 243
           +   LA   +  +G+R  +  R  VQ L        I+  K G      LP        +
Sbjct: 126 AYALLAR-LMYGTGMRLLEGLRLRVQDLDFERAELLIREGKGGKDRVTMLPQSLLKPLQE 184

Query: 244 LLAMTPIGKETFFINNDKQKMNA------------------------------------- 266
            L       E   +    +   +                                     
Sbjct: 185 HLKQVKQAHEQDLLKGYGEVWLSESVARKYPNAGREWVWQYVFPSARLSVDPRSGVTRRH 244

Query: 267 ----TQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
                      K  A  AG+ K  + H +R   AT    AG     +    G K V    
Sbjct: 245 HLDEKGLQRAIKQAAVDAGLTKNVTPHTLRHSFATHLLQAGYDIRTVQELLGHKDVQTTM 304

Query: 321 TYTKGADRIRLGIKN 335
            YT   ++  +G+ +
Sbjct: 305 IYTHVLNKGGMGVMS 319


>gi|124514510|gb|EAY56023.1| putative phage integrase [Leptospirillum rubarum]
          Length = 346

 Score = 90.1 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 52/335 (15%), Positives = 117/335 (34%), Gaps = 33/335 (9%)

Query: 17  RHGKIIYYFR-KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75
           + G + +  + +  G  ++    +      A+  ++     +  +++    + TTL   +
Sbjct: 6   KRGDLQWRVKIRRRGFPLQTRTFNTKAEAEAWARSIETEMDRGSFVDRSEAENTTLSEAL 65

Query: 76  SEYRKSAHWGSLAVNSRISFE---SYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132
             Y +      ++ + + S++      +      G     +I    I    + R    ++
Sbjct: 66  DRYAR-----EISPHKKGSYQELCRIENLKTHSLGKRFIAQIRGSDIALYRDERLKMVAA 120

Query: 133 AIQFLT--SMRVLFKWAVRQEYVAI--NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           A   L    +  LF+ A ++  +    NP   V  PK+     R     + ++   F   
Sbjct: 121 ATVRLELAIISHLFEIARKEWGMESLNNPVRIVNLPKKSESRDRRLLLGEEEKILEFCEI 180

Query: 189 --GSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKL 244
             G  P +     L +G+R  +      +H+  + N   I   K G   TV L    +++
Sbjct: 181 YGGDLPHIVR-LALETGMRRGEIVGMTWEHVNLKKNTVLIPKTKNGEKRTVPLSKKAVEI 239

Query: 245 LAMTPI--GKETFFINNDKQKMNATQFSIW-----FKAKATKAGV--------NKSAHGV 289
           L       G   + I  +     A + +I      ++ +  +  +        N + H +
Sbjct: 240 LKGLSRRIGGRVWEITEEHSVTTAFRRAISRARSTYEKECQEKRIKPDPSFLLNLTFHDL 299

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           R  + +   + G    ++ A  G KT+     YT 
Sbjct: 300 RHEATSRFFEKGLNPMQVAAITGHKTLQMLRRYTH 334


>gi|331270979|ref|YP_004385690.1| putative integrase/recombinase [Clostridium botulinum BKT015925]
 gi|329127371|gb|AEB77315.1| putative integrase/recombinase, putative [Clostridium botulinum
           BKT015925]
          Length = 272

 Score = 90.1 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 33/261 (12%), Positives = 84/261 (32%), Gaps = 21/261 (8%)

Query: 89  VNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVES-RKHTPSSAIQFLTSMRVLFK 145
             +  ++++   + I        +   I  +  +  +    + +P +  + + ++R    
Sbjct: 19  EKTIYTYKNDIKRFIEYFQKNKLEVNTIELRKFKDYLLQGLQLSPKTVNKNIVAIRKYLD 78

Query: 146 WAVRQEYVAINPCLSVERPKRKTEGI--RPWTKEDMQQF--KSFWSEGSQPRLAFEFLLY 201
           +    +        +++  K + +G      T  +  +   ++  S   + +     L Y
Sbjct: 79  FIHINDV-------NIKMIKIQDQGFLDDILTNSEAMRMIKEADKSHDLRAKAFICTLYY 131

Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL---LAMTPIGKETFFIN 258
           +G+R S++    V+ +  +   I   K     TV +P    ++        +        
Sbjct: 132 TGMRVSEAISVLVKDIDEDSIRI-LGKGKKYRTVLIPKKLQRIWGDYMTVRVNNSDKLFT 190

Query: 259 NDKQKMNATQFSIWFKAKATKAGVNKSA---HGVRKFSATISADAGATAHELMATYGWKT 315
             +  ++        K    KA V K     H  R        D G     +    G  +
Sbjct: 191 GQRGGISRFTALNMVKKYGGKAKVKKDKVYNHAFRHLFCMNLVDKGIPIDVVKDLAGHAS 250

Query: 316 VDQAETYTKGADRIRLGIKNS 336
           +     YT+ + +  L + N 
Sbjct: 251 ILTTNIYTRRSKKQLLDVINQ 271


>gi|310823396|ref|YP_003955754.1| phage integrase [Stigmatella aurantiaca DW4/3-1]
 gi|309396468|gb|ADO73927.1| phage integrase [Stigmatella aurantiaca DW4/3-1]
          Length = 385

 Score = 90.1 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 40/237 (16%), Positives = 74/237 (31%), Gaps = 28/237 (11%)

Query: 112 RKITTKHIRSGVESRKHTPS------SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP- 164
           R       R+ +  RK   +      +    L+++  L   A  Q+ +   P   V+   
Sbjct: 118 RARKEDATRAAIGKRKDGEAKPLSLKTINNVLSALSKLLNLAEEQKVIKQAP--RVKLFG 175

Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
           K         T E+  +         + R      L +GLR  +        L  +   +
Sbjct: 176 KLPKPKFDFLTFEEAGRLIDAAEP--EWRTLMLVALKTGLRQGELIGLQWADLDLSRGMV 233

Query: 225 KTQ-----------KTGTIITVELPDGFMKLLAM-TPIGKETFFINNDKQKMNATQFSIW 272
             +           K G   TV+LP   ++ L     +     F  +D Q + A + +  
Sbjct: 234 TVRRTIWRGVTDLPKGGRERTVDLPASAVEALKAHRHLRGRFVFCQDDGQPLTAGKTAQP 293

Query: 273 FKAKATKAGVNK-----SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            +     A + +       H +R   A+  A  G     +    G  T++  E Y  
Sbjct: 294 LRRALKMADIGREEGRIGWHDLRHTYASHLAMKGIPLKVIQELMGHVTIEMTERYAH 350


>gi|298244308|ref|ZP_06968114.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
 gi|297551789|gb|EFH85654.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
          Length = 378

 Score = 90.1 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 60/356 (16%), Positives = 114/356 (32%), Gaps = 56/356 (15%)

Query: 15  RTRHGKIIYYFRKGH----------GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64
           R  HG+   Y R             G+R  L              AL     +   I +P
Sbjct: 3   RRGHGEGSIYHRNDGRWAAVISLDNGKRKTLYGKTRKEVQEKLKKAL-HEQQEGRLITAP 61

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGV 123
           ++   T+K  +  + +  H  ++ + +   +E      ++   G    +K+  +H+++  
Sbjct: 62  QQ---TIKHYLEYWLEEVHRQNIRIRTYERYEEIVRLHLVPALGHHMLQKLAPQHLQTFY 118

Query: 124 ESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
            S+     + ++ I F   +      A+R   +A N C  V  P+RK   +     E  Q
Sbjct: 119 NSKLREGLSATTVISFHNVLHKALDHAMRWRLMAYNVCDLVSPPRRKHIELETLNMEQAQ 178

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKT--------- 229
           QF S   +  Q  L F   + +G+R  +      + +        ++   T         
Sbjct: 179 QFLSAVRDHPQEAL-FLLAIGTGMRRGEIMGLKWRDIDLATRRLQVRRVLTRIPSRISGK 237

Query: 230 ----------GTIITVELP------------DGFMKLLAMTPI--GKETFFINNDKQKMN 265
                      +   + LP                  L   P     +  F  +    +N
Sbjct: 238 GYIEDEPKSEKSRRNIVLPSFVLEGLKQHRVRQLEAKLKAGPRWEEHDYVFCTSVGTHVN 297

Query: 266 ATQ-FSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
             +     FK    KAG+ N   H +R  +AT+    G     +    G   ++  
Sbjct: 298 PDRDIQEPFKKLLKKAGLPNIRFHDLRHSAATLMLSMGVHPKIVQEILGHSRINMT 353


>gi|256842038|ref|ZP_05547543.1| integrase [Parabacteroides sp. D13]
 gi|256736354|gb|EEU49683.1| integrase [Parabacteroides sp. D13]
          Length = 310

 Score = 90.1 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 44/277 (15%), Positives = 96/277 (34%), Gaps = 31/277 (11%)

Query: 96  ESYFDQIIRK-----SGDFDYRKITTKH---IRSGVESRKHTPSSAIQFLTSMRVLFKWA 147
           +SY D +          +  Y  I  +     ++ +  R    ++   ++  +R ++  A
Sbjct: 27  KSYLDALRSFKCFCGMEEIPYAYIDKERLLLYQAWLSKRGCMRNTVSTYMRRIRHIYNLA 86

Query: 148 VRQEYVA--INPCLSVERPKRKTEGIRPWTKEDMQQFK---SFWSEGSQPRLAFEFLL-Y 201
           V    V+   N    V     +++  +    + ++          E  + +L F  +  +
Sbjct: 87  VEAGEVSYIPNLFKGV-FTGVESKRKKALPLDSLRSLMGTPRVEPEMRRTQLCFCLMFSF 145

Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG----FMKLLAMTPIGKETFFI 257
           SG+   D      +++++ + S   QK+G+ I VE+P        +L   T       F 
Sbjct: 146 SGMAFVDFAHLRKENVKDGVLSYHRQKSGSFIRVEIPADVRLLLDELAVCTDKDSPYLFP 205

Query: 258 NNDKQKMNATQFSIW----------FKAKATKAGV--NKSAHGVRKFSATISADAGATAH 305
               +K     ++ +           ++ A   GV    +++ +R   AT   +      
Sbjct: 206 FLSGKKTGEAAYAEYNGALLRFNCDLRSLAETCGVGEPVTSYTIRHSFATTLKEQDVPIE 265

Query: 306 ELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
            +    G  ++   + Y K     RL   N     SV
Sbjct: 266 MISELLGHTSIKTTQIYLKSFSLERLSAVNRACFESV 302


>gi|149923898|ref|ZP_01912286.1| Phage integrase [Plesiocystis pacifica SIR-1]
 gi|149815241|gb|EDM74788.1| Phage integrase [Plesiocystis pacifica SIR-1]
          Length = 392

 Score = 90.1 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 49/328 (14%), Positives = 92/328 (28%), Gaps = 23/328 (7%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           R  +GK     RK                       + G     E     +K+  TL   
Sbjct: 20  RLPNGKTHRERRKSPFSAKSASLRWGRE--RERHLLIHGLATASEDAGPTKKEVPTLAEF 77

Query: 75  ISEYRK-SAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPS- 131
              Y +  A       ++  +        +I   GD    +I ++ ++          + 
Sbjct: 78  APRYMEGYAKANGHKPSTLETKRQVLRLHLIPAFGDKRLDQINSELVQRLKAKLTEHMAN 137

Query: 132 -SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
            S    L  +  + K AV    +   P  + +R + K   +  +  ++        +  S
Sbjct: 138 KSINNVLGVLNTMLKCAVEWGVLEELPVRA-KRMRVKNPSMDFYDFDEYAALVKAAAAQS 196

Query: 191 QPRLAFEFLLY-SGLRCSDSCRAGVQHLQNNI-----------FSIKTQKTGTIITVELP 238
              L F  L   +GLR  +        +                 + T K   I TV L 
Sbjct: 197 PECLVFVLLGGDAGLRAGEIRGLHWAAVDLRRRQLTVEHSEYKGELTTPKYDKIRTVPLT 256

Query: 239 DGFMKLLAMTPIGKETFFIN-NDKQ--KMNATQFSIWFKAKATKAGVNKS-AHGVRKFSA 294
                 L   P   E      ++ +    +        +     A + +   H +R    
Sbjct: 257 RRLADALGALPRDCELVLYRGSEGREIPTSRQTGRTMLEKAQDAAKLRRRGPHTLRHTFC 316

Query: 295 TISADAGATAHELMATYGWKTVDQAETY 322
           +  A  GA A  +    G  ++   + Y
Sbjct: 317 SHLAMRGAAARVIQQLAGHASLVTTQRY 344


>gi|153821954|ref|ZP_01974621.1| DNA integrase IntI1 [Vibrio cholerae B33]
 gi|126520493|gb|EAZ77716.1| DNA integrase IntI1 [Vibrio cholerae B33]
          Length = 311

 Score = 90.1 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 41/289 (14%), Positives = 85/289 (29%), Gaps = 62/289 (21%)

Query: 91  SRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHTPSSAIQFLTSMRVLFK- 145
           +  ++  +    IR  G      + +  + + +      RK + S+  Q L ++   +  
Sbjct: 7   TEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGK 66

Query: 146 -WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGL 204
                  ++       + RP+         T +++ +   F  EG   RL  + L  +G+
Sbjct: 67  VLCTDLPWLQ-----EIGRPRPSRRLPVVLTPDEVVRILGFL-EGEH-RLFAQLLYGTGM 119

Query: 205 RCSDSCRAGVQH--LQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN--- 259
           R S+  +  V+     +    ++  K      + LP+     L         +++ +   
Sbjct: 120 RISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWWLKDQAE 179

Query: 260 ------------------------------------------DKQKMNATQFSIWFKAKA 277
                                                      +  M    F   FK   
Sbjct: 180 GRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAV 239

Query: 278 TKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            +AG+ K  + H +R   AT    +G     +    G   V     YT 
Sbjct: 240 EQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTH 288


>gi|291530639|emb|CBK96224.1| Site-specific recombinase XerD [Eubacterium siraeum 70/3]
          Length = 310

 Score = 90.1 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 41/288 (14%), Positives = 96/288 (33%), Gaps = 37/288 (12%)

Query: 87  LAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRV 142
           +  ++  ++    +  I+   GD     +T K ++  V  +     +  +    L  +R+
Sbjct: 22  VKKSTYAAYSLIVETHILPAFGD--LTTVTEKDVQEFVLQKLQSGLSQKTIKDMLIVLRM 79

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR-LAFEFLLY 201
           + K+  +++Y A  P   +    R+ + +   +  + ++  S+  +    R L     L 
Sbjct: 80  ILKFGAKKQYCAYVPFDVIFPTDREKQELDVLSVVNQRKIVSYVRDNFTFRNLGILICLS 139

Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII------------------------TVEL 237
           +G+R  + C      +  +   I  +KT   I                         + +
Sbjct: 140 TGIRIGEVCALTWDDIDIDNGVIHIRKTIQRIYVNEGGVRKTELLIDTPKTATSMRDIPM 199

Query: 238 PDGFMKLLAMTP--IGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSA 294
                ++L      +  + + + ND +      +  ++K    K G+     HG+R   A
Sbjct: 200 IKELYEVLKPLKKVVRSDYYVLTNDAEPTEPRTYRNYYKRLLDKLGIPPIKFHGLRHSFA 259

Query: 295 TISADAGATAHELMATYGWKTVDQA-ETYTK--GADRIRLGIKNSRRI 339
           T   ++      +    G   +      Y       + R   K  R I
Sbjct: 260 TRCIESKCDYKTVSVILGHSNISTTLNLYVHPNYEQKKRCIDKMFRSI 307


>gi|319902259|ref|YP_004161987.1| integrase family protein [Bacteroides helcogenes P 36-108]
 gi|319417290|gb|ADV44401.1| integrase family protein [Bacteroides helcogenes P 36-108]
          Length = 388

 Score = 90.1 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 61/302 (20%), Positives = 114/302 (37%), Gaps = 30/302 (9%)

Query: 49  SALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD 108
            ALT     REY N    K  T    + EY KS     + + +     S   +    +  
Sbjct: 85  QALTKDIFMREYNNPSDYK--TFHDFVKEYMKSYS-RRIEMGTFKHHLSCMKKFKAYNEL 141

Query: 109 FDYRKITTKHIRSGVESRK----HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS--VE 162
             +R++T  ++   +   K    +T  +A + ++++++    A R+ Y+  NP     ++
Sbjct: 142 LQFRELTPDYLSDYLIYMKKELGNTEITAQRNMSTIKIYVTAAYRKGYIEENPFQEFHIK 201

Query: 163 RPKRKTEGIRPWTKEDMQQFKSFWSEGSQP------RLAFEFLLYSGLRCSDSCRAGVQH 216
           R K   +     T+E++ QF   + + + P         F F+ ++ +  +D+    ++ 
Sbjct: 202 RIKSDVD---YLTEEELMQFVHLYYQRTLPEKLQLTLAFFLFMCFTSMHITDARMLCIEQ 258

Query: 217 LQNNIFSIKTQK----TGTIITVELPDGFMKLLAMTPIGKE--TFFINNDKQKMNATQFS 270
           + NN+ +    K        I + +P   +KLL      +E    F N           +
Sbjct: 259 VNNNVLTYYRVKNRNCKPEPIKIPMPIPALKLLEEWAEDREEGRLFRNVQ----CDQVVN 314

Query: 271 IWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
              KA A + G+NK  SA   R   ATI          L    G   + +   Y    D 
Sbjct: 315 RQLKAIAKELGINKKISAKTGRHTFATIYLRKTKDLSSLQKLLGHSNIRETMIYAHVMDE 374

Query: 329 IR 330
            +
Sbjct: 375 SK 376


>gi|42520949|ref|NP_966864.1| phage integrase family site specific recombinase [Wolbachia
           endosymbiont of Drosophila melanogaster]
 gi|42410690|gb|AAS14798.1| site-specific recombinase, phage integrase family [Wolbachia
           endosymbiont of Drosophila melanogaster]
          Length = 328

 Score = 90.1 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 47/295 (15%), Positives = 102/295 (34%), Gaps = 44/295 (14%)

Query: 85  GSLAVNSRISFESYF---DQIIRKSGDFDY---RKITTKHIRSGVESRKHTPSSAIQFLT 138
            S A N+  S+ S     ++ + +SG       +     +++S    +K+  SS  + ++
Sbjct: 26  RSAAQNTLESYRSDLHQFEEFLLESGTTLVGVNKTNIKDYVKSLCTQKKYKSSSISRKIS 85

Query: 139 SMRVLFKWAVRQEYVAINPC----LSVERPKRKTEGIRPWTKEDM----QQFKSFWSEGS 190
           +M+  +K       +  NP       ++ PK      +  + E++       +   SE +
Sbjct: 86  AMKNFYKCLFNNGIIDFNPAPANDAELKNPKVSRPLPKYLSVEEIFLLIDTVRKSASESN 145

Query: 191 QP----RLA--FEFLLYSGLRCSDSCRAGVQHL-------QNNIFSIKTQKTGTIITVEL 237
           +     RL    + L  SG+R S+     +  +           + I   K+G    +  
Sbjct: 146 KEISSKRLCAILDILYSSGMRVSELISMKLCEVSHLINSNNKECYIIIKGKSGRERQILF 205

Query: 238 PDGFMKLLAMTPIGKETFFIN-----------NDKQKMNATQFSIWFKAKATKAGVNK-- 284
            +  ++ L      ++                   + +   +     K  A K  +++  
Sbjct: 206 NEQALQSLRNYLSVRDNLISKEKESDWLFPGDKPNKPITRQRVGQLMKELARKCNIDENK 265

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI---RLGIKN 335
            S H VR   AT   ++GA    +    G   +   + YT  A+     +L   +
Sbjct: 266 ISPHVVRHSFATHLLNSGANIVLIQKVLGHTNLSTTQIYTHIANEKLKDKLADSH 320


>gi|317502290|ref|ZP_07960460.1| hypothetical protein HMPREF1026_02404 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|316896308|gb|EFV18409.1| hypothetical protein HMPREF1026_02404 [Lachnospiraceae bacterium
           8_1_57FAA]
          Length = 406

 Score = 90.1 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 52/338 (15%), Positives = 100/338 (29%), Gaps = 65/338 (19%)

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISF-ESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
           K  TL  L   Y  +     LA  +R+S+  ++ +++  + G+    ++   HI++    
Sbjct: 70  KKMTLNTLFERYMAT---RELADTTRVSYVRAWENRVKDEIGNIKVVQLLPSHIKAYYAK 126

Query: 126 RKHTPSSAIQFLTSMRVLF---KWAVRQEYVAINPCLS-VERPKRKTEGIRPWTKEDMQQ 181
                 +         +L+   + AV  + +  NP  S +    +  E     T    ++
Sbjct: 127 LSKAGYAYSTIKYIHNLLYPALEMAVDDDIIRKNPAKSSISDYGKPAEEKEALTVSQQEK 186

Query: 182 FKSFWS---EGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-------------------QN 219
           F  F       +     F  ++ +GLRC +      + +                     
Sbjct: 187 FMEFVKQSNVYNTYYPMFTIMIGTGLRCGELIGLTWKDINIKAKTVNVDHQLIYKNLGDG 246

Query: 220 NIFSIKTQKTGTIIT-VELPDGFMKLLAMTPIGKETF---------------FINNDKQK 263
             F I T KT + I  + +     K                           F     + 
Sbjct: 247 CKFHISTPKTESGIRIIPMTQEVAKAFEEQRKINFMLAKDKSIEVDGYSGFVFTAKSGRP 306

Query: 264 MNATQFSIWF----------------KAKATKAGVNK-SAHGVRKFSATISADAGATAHE 306
           +     +                   K       + K SAH +R  + T  A+       
Sbjct: 307 LMPNGVNSVLYNIVDAYNKTEVERAKKEHRKAELLPKFSAHVMRHTACTRMAECRMDVKV 366

Query: 307 LMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVV 343
           L    G   +D   E Y    +  R+  +   R+ S+V
Sbjct: 367 LQYIMGHAHIDVTMEVYNHIGELTRIENE-IARLDSMV 403


>gi|256855129|ref|ZP_05560490.1| site-specific recombinase [Enterococcus faecalis T8]
 gi|307291608|ref|ZP_07571484.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0411]
 gi|256709642|gb|EEU24689.1| site-specific recombinase [Enterococcus faecalis T8]
 gi|306497369|gb|EFM66910.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0411]
 gi|315028786|gb|EFT40718.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX4000]
          Length = 397

 Score = 90.1 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 48/342 (14%), Positives = 106/342 (30%), Gaps = 57/342 (16%)

Query: 23  YYFRKGHG--------RRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           YYFR   G        ++ R  +  +      Y   L      +    S  K   T    
Sbjct: 14  YYFRANLGYDSKGKKIQKYRSGFTTKKEAREEYSKLLL----MKPEELSENKDKMTFNHY 69

Query: 75  ISE----YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
           I E    + K+     + + +  +      +            I    +++         
Sbjct: 70  IFEIFLPWYKT----QVKLRTYENRLPTIKKHFSYFDKMAVSDIEPIDVQNWQLKLSKKC 125

Query: 131 SSAIQFLTSMRVLFKWAVRQ----EYVAINPCLSVERPKRKTEGIRPWTKEDMQQF---- 182
            S   ++ +++ LF  A+ +         NP   +   K++   I  WTKE+ ++     
Sbjct: 126 KS--SYVRAVQGLFSVAMDRAIVLGITTTNPSKIIGNVKKQKSKIEFWTKEEFEKVISLI 183

Query: 183 --KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--------NNIFSIKTQ----- 227
             + ++       L F F+  +G+R  ++     + +         N     K Q     
Sbjct: 184 YKEDYYQHFLFISLWFLFM--TGMRIGEATAIQWKDIDFDSGVLTINKTLYYKNQSDYRF 241

Query: 228 ---KTGTIITVELPDGF-MKLLAMTPIGKETFFINN-----DKQKMNATQFSIWFKAKAT 278
              KT   +   + D   +  L+     ++     +     +         +   +  A 
Sbjct: 242 VEPKTKASVRHIVLDECTLNYLSKWKKAQQNLIQTDFVMSYNGIPTQKHTLAHAIERYAK 301

Query: 279 KAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
            AG+++   HG+R   A++    G     +    G + ++  
Sbjct: 302 LAGIHRIRIHGLRHSHASLLISMGENPLIIKDRLGHEDIETT 343


>gi|77465807|ref|YP_355310.1| integrase [Rhodobacter sphaeroides 2.4.1]
 gi|77390225|gb|ABA81409.1| possible integrase [Rhodobacter sphaeroides 2.4.1]
          Length = 332

 Score = 90.1 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 52/314 (16%), Positives = 104/314 (33%), Gaps = 21/314 (6%)

Query: 25  FRKGHGRRIRLPYPHESTFIPAYM-SALTGSTPKREYINSPRKK-----PTTLKWLISEY 78
           +R G      +    E      Y   A T +  + E ++  R++      TT++ L + Y
Sbjct: 4   YRIGRLNGRFVVSWWEDGARRRYRLDARTRAEAEVEALDRIRRETLPSGATTVRDLWAAY 63

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS--SAIQF 136
                   +      +  S  + ++   G     +IT +  RS  ++R+ T S  +    
Sbjct: 64  LADRKGRPVE----RNMRSSGNAVLPHFGALRPDQITPEACRSYTKARRKTVSVGTVWTE 119

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196
           L  +R    WA ++  + + P   +ERP +     R  T  ++ +      E    +LA 
Sbjct: 120 LGHLRTCLLWAAKRGLIQVAP--HIERPAKPAPRDRYLTHAEVSRLMEAECEP-HIKLAI 176

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIK-----TQKTGTIITVELPDGFMKLLAMTPIG 251
             LL +  R           +      I+             TV + +     L      
Sbjct: 177 TVLLTTAARVGAVLELTWDRVDLERGQIRLRVEAEGPRKGRATVPINNTLRAALTSARAA 236

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATY 311
             +  +              + +A +    ++ + H +R  +A   A+AG    E+    
Sbjct: 237 ALSDHVIEWAGGPVKCIRKGFLRAVSNAGLLDVTLHTLRHTAAVHMAEAGVPMDEISQYL 296

Query: 312 GWKTVD-QAETYTK 324
           G   V   +  Y +
Sbjct: 297 GHSNVQITSSVYAR 310


>gi|306846318|ref|ZP_07478878.1| shufflon-specific DNA recombinase [Brucella sp. BO1]
 gi|306273245|gb|EFM55118.1| shufflon-specific DNA recombinase [Brucella sp. BO1]
          Length = 301

 Score = 90.1 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 49/290 (16%), Positives = 90/290 (31%), Gaps = 23/290 (7%)

Query: 48  MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG 107
             A       +    S   K  TL  L+  Y +            I              
Sbjct: 11  WQAQVRRRGMKPRCKSFDSK--TLGSLLKRYAEEISPSKRGSAQEIQRLDVLQ--RHDLA 66

Query: 108 DFDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAV-RQEY-VAINPCLSVER 163
                 ++ + I S  + R  T  P++A++ L  +  +   A+    Y +A N    + R
Sbjct: 67  YRTLVGLSQQDIASFRDERLKTVKPATALRELAILSHVLDVAMRDWGYPLAQNVVKMIRR 126

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHL--QN 219
           P       R  T  + Q+      +G            + +G+R  +        +    
Sbjct: 127 PTINNARSRRLTASEEQRILDACDDGKVECFLALVILAIETGMRRGEILGLKWTDISHNR 186

Query: 220 NIFSIKTQKTGTIITVELPD----GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKA 275
            + S+   K GT   V L        M L     + +   F       M+ + F   ++ 
Sbjct: 187 RVISLAMTKNGTSREVPLSQRAYTELMMLKQSETVDQSMPF------AMSNSAFEQTWRR 240

Query: 276 KATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              +A V N   H +R  + +   + G    E+ +  G K +   + YT 
Sbjct: 241 VLKRANVSNLKFHDLRHEAVSRFFELGLNIMEVSSISGHKELAMLKRYTH 290


>gi|325678716|ref|ZP_08158324.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
 gi|324109580|gb|EGC03788.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
          Length = 369

 Score = 90.1 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 54/310 (17%), Positives = 112/310 (36%), Gaps = 41/310 (13%)

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRSG 122
           P   P T+  L   +  S    ++   +  S+   FD  IR + G++   +++   +   
Sbjct: 56  PVDDPMTVSELFDAWIFSRK-NNIKQTTYASYCYMFDHYIRCRLGEYRIDRLSAFILERV 114

Query: 123 VESRKHTPSSAIQFLTS---------MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
           +             L+S         ++ LFK+    EY   +   +V  PK ++  I+ 
Sbjct: 115 LSELIECGGKNGHQLSSKTVKDITVMLKSLFKYG-EVEYSLPDSMKNVTPPKCESAEIQV 173

Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKT----- 226
           + ++++ + + +    +   L     LY+GLR  + C      +   +N+F ++      
Sbjct: 174 FKEQEIVKMRQYAIHSNISDLGILLCLYTGLRIGEICALQWGDIDLIDNVFHVRKTLTRI 233

Query: 227 -----QKTGTII------------TVELPDGFMKLLAMTPI--GKETFFINNDKQKMNAT 267
                 K  TI+             + +P   +K L         + +F+   ++     
Sbjct: 234 PNPDGSKPKTIVIIDTPKSKRLVRDIPIPTFMLKRLTEVKKHQQNDDYFLTGTQKYTEHR 293

Query: 268 QFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKG 325
            +S  +K+   + GV  K+ H +R   AT     G     +    G  +V    E Y   
Sbjct: 294 SYSSRYKSFLKRIGVPYKNFHVLRHTFATECIRIGIDVKTVSELLGHSSVKITLERYVHS 353

Query: 326 -ADRIRLGIK 334
             D  R  ++
Sbjct: 354 DMDMKRQQLE 363


>gi|260462340|ref|ZP_05810548.1| integrase family protein [Mesorhizobium opportunistum WSM2075]
 gi|259031834|gb|EEW33102.1| integrase family protein [Mesorhizobium opportunistum WSM2075]
          Length = 367

 Score = 90.1 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 31/209 (14%), Positives = 71/209 (33%), Gaps = 9/209 (4%)

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           +  R ++ ++  + + ++  L + A +   +   P     R K +   IR   +++  + 
Sbjct: 92  LRQRGNSNATINRKMAALSKLLRKAYKMGDIHSLP--EFRRQKERAGRIRFLERDEEARL 149

Query: 183 KSFWSEGSQPRLAFEFLLY-SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241
            +     S+        L  SG R  ++       +Q +  S    K+G   T+ + +  
Sbjct: 150 FAAIKSRSEDAYRLSVFLVDSGCRLGEALGLIWNDIQEHRVSFWITKSGRSRTIPMTERV 209

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS----AHGVRKFSATIS 297
            +++ + P             K +  QF   +     + G+        H +R   A+  
Sbjct: 210 KEVIKLPPAEGRR--PKGPFTKFSQAQFRAIWNEAKAEVGLGADDQVVPHILRHTCASRL 267

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGA 326
              G     +    G +T+     Y   A
Sbjct: 268 VQGGIDIRRVQMWLGHQTLSMTMRYAHLA 296


>gi|253752228|ref|YP_003025369.1| putative phage integrase [Streptococcus suis SC84]
 gi|253754054|ref|YP_003027195.1| phage integrase [Streptococcus suis P1/7]
 gi|251816517|emb|CAZ52153.1| putative phage integrase [Streptococcus suis SC84]
 gi|251820300|emb|CAR46803.1| putative phage integrase [Streptococcus suis P1/7]
 gi|292558819|gb|ADE31820.1| integrase [Streptococcus suis GZ1]
 gi|319758617|gb|ADV70559.1| putative phage integrase [Streptococcus suis JS14]
          Length = 380

 Score = 90.1 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 46/302 (15%), Positives = 97/302 (32%), Gaps = 44/302 (14%)

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
           +    T + +   + +       A             I+   G     KI+    +   +
Sbjct: 62  KPDRITFEEVYKIWLEHYKNTVKASTYARQKAQADLHIVPVFGACYVDKISLPMCQKQAQ 121

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP-------WTKE 177
                      F+   +++  +AV   Y+  NP   + +P++ +E           +++E
Sbjct: 122 EWFKGYKKYANFIGMTKMVLDFAVNLGYIHDNPMKKIIKPRKSSEVDEEEKKKENFYSRE 181

Query: 178 DMQQFKSFWSEGSQPRLA--FEFLLYSGLRCSDSCRAGVQHLQ----------------N 219
           D+Q+F    ++  +  +A  F  L ++G+R S+      + L                 N
Sbjct: 182 DLQKFLDCVAKEDKEEIACIFRLLAFTGMRKSEVLALRWKDLDLFTSRLSVSQIVAYGEN 241

Query: 220 NIFSIKTQKTGT--------IITVELPDGFMKLL-------AMTPIGKETFFINNDKQKM 264
           N    +T KT           ITV +   + K          + P   +  F        
Sbjct: 242 NSIVYQTPKTKKSKRTITLDPITVSILKKWEKTRQFLNFPQRVKPT--DLVFPAETGNAH 299

Query: 265 NATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TY 322
           +    +   +    K  +   + HG R    ++  +AGA+  E+    G + +      Y
Sbjct: 300 SFDYINYNLRCILKKYDLPYITPHGFRHTHCSLLFEAGASIKEVQERLGHEDIKTTMNIY 359

Query: 323 TK 324
             
Sbjct: 360 AH 361


>gi|154483513|ref|ZP_02025961.1| hypothetical protein EUBVEN_01217 [Eubacterium ventriosum ATCC
           27560]
 gi|149735423|gb|EDM51309.1| hypothetical protein EUBVEN_01217 [Eubacterium ventriosum ATCC
           27560]
          Length = 351

 Score = 90.1 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 40/281 (14%), Positives = 88/281 (31%), Gaps = 43/281 (15%)

Query: 87  LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKW 146
           L   +    E Y + +      +   +   +H               ++ L  +R L+++
Sbjct: 80  LDKITATDIEEYLEYLR-----YYVTEDGKEHTNGE--------RGIMRKLACLRTLYRY 126

Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG---------------SQ 191
             ++E +  NP   V+ PK   + I     +++         G               ++
Sbjct: 127 FYKKESIKTNPASIVDMPKIHEKEIVRLDADEVSVLLDQVELGDKLTKSQQKFHDKTKTR 186

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKT-------GTIITVELPDGFM 242
                  LL +G+R S+     +  +   N+   I+ +         G  +   L D   
Sbjct: 187 DMAILTLLLGTGMRVSECVGIDINDIDFKNSGIKIRRKGGNETVIYFGEEVENALLDYLE 246

Query: 243 KLLAMTPIGKE--TFFINNDKQKMNATQFSIWFKAKATK-AGVNK-SAHGVRKFSATISA 298
           +   + P        F++  K+++         K  ++    + K + H +R    T   
Sbjct: 247 ERKLIVPQDGHENALFLSLQKRRIGVRAVENLVKKYSSLVTNLKKITPHKLRSTYGTALY 306

Query: 299 DAGATAHELMATYGWKTVDQA-ETYTKGAD-RIRLGIKNSR 337
                 + +    G K V+   + Y    D R R      +
Sbjct: 307 KETGDIYLVADVLGHKDVNTTKKHYAAIEDERRRKARNAVK 347


>gi|160903194|ref|YP_001568775.1| integrase family protein [Petrotoga mobilis SJ95]
 gi|160360838|gb|ABX32452.1| integrase family protein [Petrotoga mobilis SJ95]
          Length = 306

 Score = 90.1 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 37/298 (12%), Positives = 92/298 (30%), Gaps = 47/298 (15%)

Query: 64  PRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122
             K    ++  ISE+     +    A ++   ++       +         +T       
Sbjct: 10  SIKDKDKIEGYISEFLSYLKFVKRRADSTIYEYKKILKSYKKFV---QIYGLTRGCFLKY 66

Query: 123 VESRKH-TPSSAIQFLTSMRVLFKWAVRQE-------YVAINPCLSVERPKRKTEGIRPW 174
           +E   + +  +    +  ++    +            +   N        K  ++  +  
Sbjct: 67  LEEISNLSQRTIKLRIVVLKSFLNYLYENGEISGKKYWKDAN-------AKIPSDVPKGL 119

Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL---QNNIFSIKTQKTGT 231
           T+  ++ F S   +    +  +  LL +GLR S++     + +    ++   +   K   
Sbjct: 120 TESQIKVFFSVIEDKF-DKTFYSLLLKTGLRISEALWLEKEQIIFYNDHAELVINGKGNR 178

Query: 232 IITVELPDGFMKLL--------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG-- 281
           +  +++   + + L             GK+  F N++   + +      FK    KA   
Sbjct: 179 VRYLKISKQYAEQLITFAEKNTPKGAQGKKYIFSNDNDVPITSRTMERRFKDYVIKANNK 238

Query: 282 --------------VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
                         +N + H +R   A    ++G    E+    G  T+     Y + 
Sbjct: 239 IDQLRTKGYNNINYINATPHALRHTCAKRLLNSGKNLEEVRYILGHTTISTTGIYVRS 296


>gi|315655029|ref|ZP_07907933.1| integrase/recombinase XerD [Mobiluncus curtisii ATCC 51333]
 gi|315490685|gb|EFU80306.1| integrase/recombinase XerD [Mobiluncus curtisii ATCC 51333]
          Length = 323

 Score = 90.1 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 41/281 (14%), Positives = 88/281 (31%), Gaps = 41/281 (14%)

Query: 85  GSLAVNSRISFESYFDQIIR-----KSGDFD------YRKITTKHIRSGVESRKH---TP 130
             L+  +  ++ +   +++       SGD                IR+ + +      + 
Sbjct: 26  RGLSPQTVRAYLTDLRELMTFLVDSDSGDGPTAQQLRVDLANPARIRAWLGAMSRAGMSR 85

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK-----SF 185
           ++  + + S R    WA  ++ V  +   ++   +         +  D          + 
Sbjct: 86  ATLARRVASFRTFSSWAQVRDIVPGDAGQNLRAMRPDNALPTVLSATDAAHLLETARVAA 145

Query: 186 WSEGS--------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-- 235
           + E S        +   A E L  +G+R S+     + ++  +  +I+    G    V  
Sbjct: 146 YPEASTAPNPVKLRDWAALELLYATGIRVSELTGLELGNINKSQRTIRVTGKGDKQRVVP 205

Query: 236 -----------ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-N 283
                       L  G   L+          F+      ++             +AGV +
Sbjct: 206 YGIPAGLALEEYLEKGRPALVNPEKPALNRVFLGAKGGMLDTRIVRGMLHRLTAQAGVPD 265

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              HG+R  +AT   D GA    +    G  ++   + YT 
Sbjct: 266 LGPHGLRHTAATHLLDGGADLRSVQEILGHASLATTQRYTH 306


>gi|307243971|ref|ZP_07526092.1| phage integrase, N-terminal SAM domain protein [Peptostreptococcus
           stomatis DSM 17678]
 gi|306492621|gb|EFM64653.1| phage integrase, N-terminal SAM domain protein [Peptostreptococcus
           stomatis DSM 17678]
          Length = 327

 Score = 90.1 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 35/270 (12%), Positives = 92/270 (34%), Gaps = 14/270 (5%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV-- 123
            +  + + L+  +  +      +  S   +++  + ++ +    D ++I T  IR+ +  
Sbjct: 44  HEENSEQNLVELFLSAKRIEGCSEKSLKYYKTMIETMLFQL-QKDVKQIVTDDIRTYLTE 102

Query: 124 --ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
              S+  +  +       +   F W   ++Y+  +P   + + K  T     ++ E ++ 
Sbjct: 103 YQNSKHSSRVTIDNIRRILSSFFSWLEDEDYILKSPVRRIHKVKTGTSVKETYSDEALEL 162

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG- 240
            +   +E  +     +    +G+R  +      + +  N         G    +   D  
Sbjct: 163 MRDSCTE-LRDLAMIDMFASTGMRVGEMVLLNREDINFNERECVVFGKGDKERIVYFDAR 221

Query: 241 ----FMKLLAMTPIGKETFFIN--NDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFS 293
                   L          F++  +   +M      +  +    + G+ K   H  R+  
Sbjct: 222 TKIHLQNYLQSRKDNNPALFVSLQSPHNRMKIGGIEVRLRNLGNRLGLVKVHPHKFRRTL 281

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYT 323
           AT++ D G    ++    G + +D    Y 
Sbjct: 282 ATVAIDKGMPIEQVQQLLGHRRIDTTLQYA 311


>gi|301308789|ref|ZP_07214741.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           20_3]
 gi|300833313|gb|EFK63931.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           20_3]
          Length = 310

 Score = 90.1 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 45/277 (16%), Positives = 96/277 (34%), Gaps = 31/277 (11%)

Query: 96  ESYFDQIIRK-----SGDFDYRKITTKH---IRSGVESRKHTPSSAIQFLTSMRVLFKWA 147
           +SY D +          +  Y  I  +     ++ +  R    ++   ++  +R ++  A
Sbjct: 27  KSYLDALRSFKCFCGMEEIPYAYIDKERLLLYQAWLSKRGCMRNTVSTYMRRIRHIYNLA 86

Query: 148 VRQEYVA--INPCLSVERPKRKTEGIRPWTKEDMQQFK---SFWSEGSQPRLAFEFLL-Y 201
           V    V+   N    V     +++  +    + ++          E  + +L F  +  +
Sbjct: 87  VEAGEVSYIPNLFKGV-FTGVESKRKKALPLDSLRSLMGTPRVEPEMRRTQLCFCLMFSF 145

Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG----FMKLLAMTPIGKETFFI 257
           SG+   D      +++++ + S   QK+G+ I VE+P        +L   T       F 
Sbjct: 146 SGMAFVDFAHLRKENVKDGVLSYHRQKSGSFIRVEIPADVRLLLDELAVCTDKDSPYLFP 205

Query: 258 NNDKQKMNAT----------QFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAH 305
               +K              +F+   ++ A   GV    +++ +R   AT   +      
Sbjct: 206 FLSGKKTGEAAYAEYNGALLRFNRNLRSLAETCGVGEPVTSYTIRHSFATTLKEQDVPIE 265

Query: 306 ELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
            +    G  ++   + Y K     RL   N     SV
Sbjct: 266 MISELLGHTSIKTTQIYLKSFSLERLSAVNRACFESV 302


>gi|15801334|ref|NP_287351.1| putative integrase of prophage CP-933X [Escherichia coli O157:H7
           EDL933]
 gi|15830863|ref|NP_309636.1| intergrase [Escherichia coli O157:H7 str. Sakai]
 gi|168749741|ref|ZP_02774763.1| prophage lambda integrase [Escherichia coli O157:H7 str. EC4113]
 gi|168756477|ref|ZP_02781484.1| prophage lambda integrase [Escherichia coli O157:H7 str. EC4401]
 gi|168762555|ref|ZP_02787562.1| prophage lambda integrase [Escherichia coli O157:H7 str. EC4501]
 gi|168771006|ref|ZP_02796013.1| prophage lambda integrase [Escherichia coli O157:H7 str. EC4486]
 gi|168776049|ref|ZP_02801056.1| prophage lambda integrase [Escherichia coli O157:H7 str. EC4196]
 gi|168782475|ref|ZP_02807482.1| prophage lambda integrase [Escherichia coli O157:H7 str. EC4076]
 gi|168787614|ref|ZP_02812621.1| prophage lambda integrase [Escherichia coli O157:H7 str. EC869]
 gi|168800450|ref|ZP_02825457.1| prophage lambda integrase [Escherichia coli O157:H7 str. EC508]
 gi|195938769|ref|ZP_03084151.1| intergrase [Escherichia coli O157:H7 str. EC4024]
 gi|208806721|ref|ZP_03249058.1| prophage lambda integrase [Escherichia coli O157:H7 str. EC4206]
 gi|208815352|ref|ZP_03256531.1| prophage lambda integrase [Escherichia coli O157:H7 str. EC4045]
 gi|208822097|ref|ZP_03262416.1| prophage lambda integrase [Escherichia coli O157:H7 str. EC4042]
 gi|209396519|ref|YP_002270055.1| intergrase [Escherichia coli O157:H7 str. EC4115]
 gi|217328258|ref|ZP_03444340.1| intergrase [Escherichia coli O157:H7 str. TW14588]
 gi|254792597|ref|YP_003077434.1| putative integrase of prophage CP-933X [Escherichia coli O157:H7
           str. TW14359]
 gi|261227238|ref|ZP_05941519.1| putative integrase of prophage CP-933X [Escherichia coli O157:H7
           str. FRIK2000]
 gi|261258755|ref|ZP_05951288.1| putative integrase of prophage CP-933X [Escherichia coli O157:H7
           str. FRIK966]
 gi|12514791|gb|AAG55963.1|AE005329_7 putative integrase of prophage CP-933X [Escherichia coli O157:H7
           str. EDL933]
 gi|13361073|dbj|BAB35032.1| intergrase [Escherichia coli O157:H7 str. Sakai]
 gi|187768527|gb|EDU32371.1| prophage lambda integrase [Escherichia coli O157:H7 str. EC4196]
 gi|188015991|gb|EDU54113.1| prophage lambda integrase [Escherichia coli O157:H7 str. EC4113]
 gi|189000064|gb|EDU69050.1| prophage lambda integrase [Escherichia coli O157:H7 str. EC4076]
 gi|189356364|gb|EDU74783.1| prophage lambda integrase [Escherichia coli O157:H7 str. EC4401]
 gi|189360144|gb|EDU78563.1| prophage lambda integrase [Escherichia coli O157:H7 str. EC4486]
 gi|189367182|gb|EDU85598.1| prophage lambda integrase [Escherichia coli O157:H7 str. EC4501]
 gi|189372539|gb|EDU90955.1| prophage lambda integrase [Escherichia coli O157:H7 str. EC869]
 gi|189377300|gb|EDU95716.1| prophage lambda integrase [Escherichia coli O157:H7 str. EC508]
 gi|208726522|gb|EDZ76123.1| prophage lambda integrase [Escherichia coli O157:H7 str. EC4206]
 gi|208732000|gb|EDZ80688.1| prophage lambda integrase [Escherichia coli O157:H7 str. EC4045]
 gi|208737582|gb|EDZ85265.1| prophage lambda integrase [Escherichia coli O157:H7 str. EC4042]
 gi|209157919|gb|ACI35352.1| intergrase [Escherichia coli O157:H7 str. EC4115]
 gi|217318685|gb|EEC27111.1| intergrase [Escherichia coli O157:H7 str. TW14588]
 gi|254591997|gb|ACT71358.1| putative integrase of prophage CP-933X [Escherichia coli O157:H7
           str. TW14359]
 gi|320187864|gb|EFW62534.1| Phage integrase [Escherichia coli O157:H7 str. EC1212]
 gi|326339416|gb|EGD63228.1| Phage integrase [Escherichia coli O157:H7 str. 1044]
 gi|326341461|gb|EGD65252.1| Phage integrase [Escherichia coli O157:H7 str. 1125]
          Length = 380

 Score = 90.1 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 60/358 (16%), Positives = 111/358 (31%), Gaps = 50/358 (13%)

Query: 9   PFVTKERT-RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTG----------STPK 57
           P +  +   R GK+ + ++     R       E+        A T           S  +
Sbjct: 13  PNLYCKLDKRTGKVYWQYKHPLSGRFHSLGTDENEAKQVATEANTIIAEQRTRQILSVNE 72

Query: 58  REYINSPRKKPTTLKWLISEYRKSAH----WGSLAVNSRISFESYFDQIIRKSGDFDYRK 113
           R      R+   T+   + +Y            L  NS               G    + 
Sbjct: 73  RLERMKGRRSDITVTEWLDKYNSIQEDRLQHNELRPNSYRQKGKPIRLFREHCGMQHLKD 132

Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMRVL----FKWAVRQEYVA--INPCLSVERPKRK 167
           IT   I   +++ K       +    +R++    FK A    +V    NP  + ++P+ +
Sbjct: 133 ITALDIAEIIDAVKAEGH--NRMAQVVRMVLIDVFKEAQHAGHVPPGFNPAQATKQPRNR 190

Query: 168 TEGIRPWTKEDMQQ-FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226
               R  +  + Q  F S        +      L +G R SD C      + +++  I  
Sbjct: 191 VNRQR-LSLPEWQAIFDSVSRRQPYLKCGMLLALVTGQRLSDICNLKFSDIWDDMLHITQ 249

Query: 227 QKTGTIITVELP---DGFMKLLAMTPIGKETFFIN-------------NDKQKMNATQFS 270
           +KTG+ + + L    D     L           ++             N   +++A   +
Sbjct: 250 EKTGSKLAIPLNLKCDALNITLREVISQCRDAVVSKYLVHYRHTTSQANRGDQVSANTLT 309

Query: 271 IWFKAKATKAGVNK------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
             FK    K G+        + H  R  S  +  + G    +L    G K+    + Y
Sbjct: 310 TAFKKAREKCGIKWEQGTAPTFHEQRSLSERLYREQGLDTQKL---LGHKSRKMTDRY 364


>gi|308172432|ref|YP_003919137.1| DNA integration/recombination/inversion protein [Bacillus
           amyloliquefaciens DSM 7]
 gi|307605296|emb|CBI41667.1| DNA integration/recombination/inversion protein [Bacillus
           amyloliquefaciens DSM 7]
          Length = 403

 Score = 90.1 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 54/362 (14%), Positives = 114/362 (31%), Gaps = 64/362 (17%)

Query: 20  KIIYYF--------RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
              +YF        R G  R+I+           A    L         +         +
Sbjct: 15  GYTWYFVMENGRDPRTGKRRQIKRRGFLSKASAEAAYLELKTKLISGIDVGKENILFQEI 74

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--- 128
           K L   Y++  H  ++ V++  + +S  + +    G    + IT    +  ++  +    
Sbjct: 75  KDLW--YKEYKH--TVKVSTLRARKSEIESLEEYFGKMKIKDITRGVYQKFLDYLREENY 130

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE--RPKRKTEGIRP-------WTKEDM 179
           + ++     T+  ++FK+A +++ ++ +P   V+  RPK   E I            E++
Sbjct: 131 SFNTISGIHTTASMIFKYARQEDIISKSPTEFVKPQRPKLTVEDIESQEEAENFLEGEEL 190

Query: 180 QQFKSFWSEG--SQPRLAFEFLLYSGLRCSDSCRAGVQHL---QNNIFSIKTQKT----- 229
            +F     +         F    ++G R  +      + L    +++ + +  KT     
Sbjct: 191 VEFLDLTEKHGLFLDFEYFCMAAFTGTRSGERLAGKWRDLTLEGDDLKTFRVTKTLYCPS 250

Query: 230 --------------GTIITVELPDGFMKLLAM--------------TPIGKETFFINNDK 261
                           +  V L D    LL                T    +  F   D 
Sbjct: 251 NKASDYELLPPKTPAAVRDVPLSDFLASLLKRLKLKQAKIAYANGRTFSDDDFIFARPDG 310

Query: 262 QKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQA 319
              N  +     +    +  +NK    H  R    +++A+A     E+    G +  D  
Sbjct: 311 HPENIKKMDTRMRRILKRMDINKHITQHTFRHTFTSLAAEADVPLEEIQKILGHQNDDIT 370

Query: 320 ET 321
           + 
Sbjct: 371 KK 372


>gi|300872267|gb|ADK38961.1| IntI4 [Vibrio sp. V1(2010)]
          Length = 293

 Score = 90.1 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 43/289 (14%), Positives = 86/289 (29%), Gaps = 57/289 (19%)

Query: 93  ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEY 152
            ++  +  + I          +  K +   +         A +  +       +  ++  
Sbjct: 1   RAYLHWITRYIHFHNKKHPSLMGDKEVEEFLTYLAVQGKVATKTQSLALNSLSFLYKE-- 58

Query: 153 VAINP-CLSVE--RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDS 209
           +   P  L +   R + + +     T++++++         + +L  + L  SGLR  + 
Sbjct: 59  ILKTPLSLEIRFQRSQLERKLPVVLTRDEIRRLLEIVDP--KHQLPIKLLYGSGLRLMEC 116

Query: 210 CRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLAMTPIGKETFFINN-------- 259
            R  VQ +  +  +I+    K G   TV L       L       + ++  +        
Sbjct: 117 MRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHLKEQIALAKRYYDRDLHQKNYGG 176

Query: 260 --------------------------------------DKQKMNATQFSIWFKAKATKAG 281
                                                  +  MN T      K  A +AG
Sbjct: 177 VWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVMRRHHMNETVLQKAVKRAAQEAG 236

Query: 282 VNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           + K+   H +R   AT   + GA    +    G   V   + YT   DR
Sbjct: 237 IEKTVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHVLDR 285


>gi|260593191|ref|ZP_05858649.1| integrase [Prevotella veroralis F0319]
 gi|260534899|gb|EEX17516.1| integrase [Prevotella veroralis F0319]
          Length = 409

 Score = 90.1 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 43/255 (16%), Positives = 85/255 (33%), Gaps = 28/255 (10%)

Query: 90  NSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES-------RKHTPSSAIQFLTSMRV 142
           ++R   +++  +   K  D  + ++T + I    +        ++ T  +A  FL    +
Sbjct: 139 STRTHLQNFIQR-KYKVADLAFSQLTEQFIYDFQQYFMGTCGFQESTFYNAATFLK---M 194

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-----FKSFWSEGSQPRLAFE 197
           + + A R+           +  K   +  +   +E + +     F+    E    R  F 
Sbjct: 195 VCRLAYREGLADTLLFDKAKISKGDNKLPKALDREALDKLKVLRFEDLEEEMETARDIFL 254

Query: 198 FLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252
           F  Y G    D       HL  +           QKTG +  V+L    ++L+      +
Sbjct: 255 FACYVGAAYCDLMELSKSHLVRDDEGSLWLKFNRQKTGVLCRVKLLPEAIRLIERFHSDE 314

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS-ADAGATAHELMA 309
               +      +    +    KA   +AG+    + H  R   AT+   + G     +  
Sbjct: 315 RETLL----PFIKYKNYQSCLKALRLRAGISFPFTTHTARHTFATLITLEQGVPIETVSK 370

Query: 310 TYGWKTVDQAETYTK 324
             G   +   E Y K
Sbjct: 371 MLGHSNISMTERYAK 385


>gi|260431818|ref|ZP_05785789.1| integrase family protein [Silicibacter lacuscaerulensis ITI-1157]
 gi|260415646|gb|EEX08905.1| integrase family protein [Silicibacter lacuscaerulensis ITI-1157]
          Length = 367

 Score = 90.1 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 40/269 (14%), Positives = 84/269 (31%), Gaps = 32/269 (11%)

Query: 85  GSLAVNSRISFESYFDQIIRK----SGDFDYRKITTKHIRSGVESRKHTPSS---AIQFL 137
             +  ++   +  Y    I       GD    ++T +H+    +       S     + L
Sbjct: 82  RRMERSTLRGYSDYVRLHITDAQIGIGDKLIVQLTRRHVNEFRDRLLLNGRSEHLTRRAL 141

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKT---EGIRPWTKEDMQQFKSFWSEGSQPRL 194
           + ++++   A+    +  N    V   K      +   P +KE ++       +  +P L
Sbjct: 142 SVLKLILDHAIDNGQLFTNAAQGVRVIKSSRIDYKAPVP-SKETIRALIEAADDDFKPHL 200

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ------------KTGTIITVELPDG 240
               L  +G+R S+      Q +        ++ +            + G       P  
Sbjct: 201 IVSAL--TGIRASEFRGLRWQDVDFEKGFIYVRQRADAYNQMGEPKSRAGYRDIPAGPMV 258

Query: 241 FMKL----LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATI 296
              L    L          F       +  T+    F+    + GV    H +R F+ ++
Sbjct: 259 LNALRRWKLRCPKSDLGLVFPAPRGGVLQHTRTQARFRKLQEQVGVKLRWHDLRHFAVSL 318

Query: 297 SADAGATAHELMATYGWKTVDQA-ETYTK 324
             + G +  E+M   G  ++    E Y  
Sbjct: 319 WIEQGFSIKEVMTFAGHSSIQMTMERYGH 347


>gi|148270896|ref|YP_001245356.1| phage integrase family protein [Thermotoga petrophila RKU-1]
 gi|147736440|gb|ABQ47780.1| phage integrase family protein [Thermotoga petrophila RKU-1]
          Length = 256

 Score = 90.1 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 42/265 (15%), Positives = 84/265 (31%), Gaps = 33/265 (12%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT-PSS 132
           + EY +        +  +   + S   +         Y  +T    R  +       P++
Sbjct: 4   VEEYLEYLRVVKKRSERTLYQYRSILKEFAE------YEPVTLDSWREYLHRISSNAPTT 57

Query: 133 AIQFLTSMRVLFKWAVRQEYVAI-----NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
               L  ++    W   +  + +     N       P R     +    E++++      
Sbjct: 58  QRNKLVVVKNYLNWKADRGILNVKDRFWNEAE----PPRYAVLPKAVELEEIKRIIEACD 113

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN---IFSIKTQKTGTIITVELPDGFMKL 244
                +  F+ L  +G+R S+     +Q +  N      IK +     I + +    ++ 
Sbjct: 114 -HRMYKAIFKVLANTGMRVSELVGLSIQDISLNDTARIRIKGKGNKERI-INVSRDLVEE 171

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302
           L      +  FF     +K +        K  A KAG+ K  + H  R   A    + G 
Sbjct: 172 LV-----RSGFFE----KKPSVRSIQRAVKRYARKAGIRKKVTPHIFRHSFAVALIERGI 222

Query: 303 TAHELMATYGWKTVDQAETYTKGAD 327
             +++ A  G   +     Y K A 
Sbjct: 223 PLNKIQALLGHANISTTSIYLKIAS 247


>gi|190410500|ref|YP_001965320.1| putative integrase [Streptococcus thermophilus]
 gi|84316431|gb|ABC55707.1| putative integrase [Streptococcus thermophilus]
          Length = 314

 Score = 90.1 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 44/274 (16%), Positives = 92/274 (33%), Gaps = 27/274 (9%)

Query: 83  HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFLTS 139
           ++   +  +  +++    Q          R+   + + +  +  K     P++   ++T+
Sbjct: 30  NYLDASPKTVETYKKALRQFFNYLAINGIRQPQREDVLAFRDDLKASGLKPTTVQNYITA 89

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKR-KTEGIRPWT----KEDMQQFKSFWSEGSQPRL 194
            R+ FKW  ++     N    V+  K  K       T    KE +   ++   EG +   
Sbjct: 90  TRIFFKWTEQEGLYP-NIAEHVKGAKLDKNHKKDYLTSRQAKEVLASIETDTEEGLRNYA 148

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQ---NNIFSIKTQKTGTI------ITVELPDGFMKLL 245
               ++  GLR  +  RA V  L+    N       K          I+  +       L
Sbjct: 149 ILSLMVTGGLRTIEVSRADVGDLRTVGENTVLFLQGKGREEKTEYIKISAPVEKAIRNYL 208

Query: 246 AMTPI--GKETFFI----NNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATI 296
                    +  F     N+  ++++    S   K     AG +    +AH +R  + T+
Sbjct: 209 KARGNVEEGQPLFTSTSNNSRGKRISTRTVSAIVKNALKNAGYDSARLTAHSLRHTAITL 268

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
           +  AG    E+        ++    Y    D+ +
Sbjct: 269 ALLAGREITEVQQFARHANLNTTMIYNHALDQAK 302


>gi|315611996|ref|ZP_07886914.1| phage integrase [Streptococcus sanguinis ATCC 49296]
 gi|315315985|gb|EFU64019.1| phage integrase [Streptococcus sanguinis ATCC 49296]
          Length = 381

 Score = 90.1 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 60/369 (16%), Positives = 119/369 (32%), Gaps = 50/369 (13%)

Query: 13  KERTRHGKIIYYFRK---------GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63
           K  T+ G+  Y F+             R  R  +        A    L          N 
Sbjct: 4   KYITKKGETRYLFQTYLGIDPATGKEKRTTRRGFKTIKEAKAAERDLLLDVEENGFSNNE 63

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRSG 122
             + P T   +   +  S    ++   +  + +   + +I     D   ++I+  + +  
Sbjct: 64  DFQNP-TFAEVAELWLDSYK-STVKPTTYQNVKKKLNVMIDSYFTDMKIQQISVAYCQKV 121

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT-EGIR-PWTKEDMQ 180
                +       + + +  +FK+A   + +  NP   + +PK K  +G    +TK+++ 
Sbjct: 122 AIKLSNRYILYANYYSVISRIFKYAASLDIIKSNPLDKIIKPKNKPLKGKENYYTKQELT 181

Query: 181 QFKSFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQ---------------NNIFS 223
           +F   +    +P     F  L +SGLR  ++       +                    +
Sbjct: 182 EFLKVYKANCKPVDYTFFHLLAFSGLRTGEAIGLMWSDVDFENKRLSISRTAVVIGKKQT 241

Query: 224 IKTQKTG-TIITVELPDGFMKLLAMTPI---------------GKETFFINNDKQKMNAT 267
           ++  KT  +   + L D  + +L                         F NN    + A 
Sbjct: 242 VQDPKTKRSKRVITLDDETLNVLKFWKRQQIKEYFQAGVPYKHDSNYIFTNNSGGWLLAA 301

Query: 268 QFSIWF-KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
              +   +       + K S HG R   A++  +AG TA  +    G   V    + YT 
Sbjct: 302 TMKVKLSRFFCKHKDLKKISPHGFRHTHASLLFEAGVTAKIISDRLGHNNVQITLDMYTH 361

Query: 325 GADRIRLGI 333
             D  R+ +
Sbjct: 362 INDNQRVEV 370


>gi|15966799|ref|NP_387152.1| site-specific tyrosine recombinase XerC [Sinorhizobium meliloti
           1021]
 gi|307301627|ref|ZP_07581386.1| integrase family protein [Sinorhizobium meliloti BL225C]
 gi|15076071|emb|CAC47625.1| Probable integrase/recombinase [Sinorhizobium meliloti 1021]
 gi|306903325|gb|EFN33914.1| integrase family protein [Sinorhizobium meliloti BL225C]
          Length = 330

 Score = 90.1 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 43/284 (15%), Positives = 82/284 (28%), Gaps = 30/284 (10%)

Query: 77  EYRKS-AHWGSLAVNSRISFESYFDQIIRKS-GDF-------DYRKITTKHIRSGVESRK 127
            +  S A    L+  +  ++E    Q +    G         D   +    +R  +  R+
Sbjct: 37  RWLASLAEERRLSEKTVDAYERDTRQFLTFLTGHLAGPPRLSDICALRPADLRGFLAQRR 96

Query: 128 HTPSSAIQF---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----- 179
              + A      L  +R   ++  R          +V  PK+     +  T  +      
Sbjct: 97  KGGAGARTLGRGLAGLRSFLRYLERNGLANAAGAGAVRSPKQPKSLPKALTDREALKVVT 156

Query: 180 --QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVE 236
              Q        ++       L   GLR +++           + S++ T K G    V 
Sbjct: 157 ADAQLAEEPWIAARNAAVLTLLYGCGLRIAEALDLTPADFSGPVTSLRVTGKGGKTRIVP 216

Query: 237 LPDGFMKLLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAH 287
           +     + +             +E  F      K+         +      G+    + H
Sbjct: 217 MIAAAAEAVETYRKLCPYHIEPEEPIFRGARGAKLQPAIIQREMQKLRAALGLPDSATPH 276

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            +R   AT     G     +    G  ++   + YT G D  RL
Sbjct: 277 ALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYT-GVDSARL 319


>gi|323475083|gb|ADX85689.1| XerC/D integrase-recombinase protein [Sulfolobus islandicus REY15A]
 gi|323477815|gb|ADX83053.1| XerC/D integrase-recombinase protein [Sulfolobus islandicus
           HVE10/4]
          Length = 291

 Score = 90.1 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 38/250 (15%), Positives = 83/250 (33%), Gaps = 33/250 (13%)

Query: 83  HWGSLAVN--SRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSM 140
            + +      +      +   ++ + G     ++  +  +S          +   ++ ++
Sbjct: 44  DFINKDPRKVTSEDLNKWISNLLNREGKVKGDEVEKRRAKSV---------TIRYYIIAV 94

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200
           R   KW         N  +    PK + + ++   +  +Q+  +     ++ +L    LL
Sbjct: 95  RRFLKWL--------NVSVKPPIPKVRRKEVKALDESQIQKVLNMCKR-TKDKLIIRLLL 145

Query: 201 YSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDG----FMKLLAMTPIGKET 254
            +GLR ++     V+ +   NN+  ++  K G    V   D       K +    + ++ 
Sbjct: 146 DTGLRANELLSVLVKDVDLENNMIRVRNTKNGEERVVFFTDETKQLLRKYMKGKKLDEKL 205

Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWK 314
           F I                K    K  +    H +R   AT+S   G     L    G K
Sbjct: 206 FDIT-------YDALYRKLKRLGNKVEIELRPHILRHTFATLSLKRGINVITLQKLLGHK 258

Query: 315 TVDQAETYTK 324
            +   + YT 
Sbjct: 259 DIKTTQIYTH 268


>gi|34222987|sp|Q92LK1|XERC_RHIME RecName: Full=Tyrosine recombinase xerC
          Length = 318

 Score = 90.1 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 43/284 (15%), Positives = 82/284 (28%), Gaps = 30/284 (10%)

Query: 77  EYRKS-AHWGSLAVNSRISFESYFDQIIRKS-GDF-------DYRKITTKHIRSGVESRK 127
            +  S A    L+  +  ++E    Q +    G         D   +    +R  +  R+
Sbjct: 25  RWLASLAEERRLSEKTVDAYERDTRQFLTFLTGHLAGPPRLSDICALRPADLRGFLAQRR 84

Query: 128 HTPSSAIQF---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----- 179
              + A      L  +R   ++  R          +V  PK+     +  T  +      
Sbjct: 85  KGGAGARTLGRGLAGLRSFLRYLERNGLANAAGAGAVRSPKQPKSLPKALTDREALKVVT 144

Query: 180 --QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVE 236
              Q        ++       L   GLR +++           + S++ T K G    V 
Sbjct: 145 ADAQLAEEPWIAARNAAVLTLLYGCGLRIAEALDLTPADFSGPVTSLRVTGKGGKTRIVP 204

Query: 237 LPDGFMKLLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAH 287
           +     + +             +E  F      K+         +      G+    + H
Sbjct: 205 MIAAAAEAVETYRKLCPYHIEPEEPIFRGARGAKLQPAIIQREMQKLRAALGLPDSATPH 264

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            +R   AT     G     +    G  ++   + YT G D  RL
Sbjct: 265 ALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYT-GVDSARL 307


>gi|229522964|ref|ZP_04412378.1| integron integrase IntI4 [Vibrio cholerae TM 11079-80]
 gi|229340181|gb|EEO05189.1| integron integrase IntI4 [Vibrio cholerae TM 11079-80]
          Length = 320

 Score = 90.1 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 43/294 (14%), Positives = 88/294 (29%), Gaps = 57/294 (19%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWA 147
           A  +  ++  +  + I          +  K +   +         A +  +       + 
Sbjct: 19  AKKTIEAYLHWITRYIHFHNKKHPNLMGDKEVEEFLTYLAVQGKVATKTQSLALNSLSFL 78

Query: 148 VRQEYVAINP-CLSVE--RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGL 204
            ++  +   P  L +   R + + +     T++++++         + +L  + L  SGL
Sbjct: 79  YKE--ILKTPLSLEIRFQRSQLERKLPVVLTRDEIRRLLEIVDP--KHQLPIKLLYGSGL 134

Query: 205 RCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLAMTPIGKETFFINN--- 259
           R  +  R  VQ +  +  +I+    K G   TV L       L       + ++  +   
Sbjct: 135 RLMECMRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHLKEQIALAKRYYDRDLHQ 194

Query: 260 -------------------------------------------DKQKMNATQFSIWFKAK 276
                                                       +  MN T      +  
Sbjct: 195 KNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVMRRHHMNETVLQKAVRRS 254

Query: 277 ATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           A +AG+ K+   H +R   AT   + GA    +    G   V   + YT   DR
Sbjct: 255 AQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHVLDR 308


>gi|302559765|ref|ZP_07312107.1| integrase [Streptomyces griseoflavus Tu4000]
 gi|302477383|gb|EFL40476.1| integrase [Streptomyces griseoflavus Tu4000]
          Length = 392

 Score = 90.1 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 54/349 (15%), Positives = 103/349 (29%), Gaps = 41/349 (11%)

Query: 13  KERTRHGKIIYYFRKGHGRRIRLPYPHE----------STFIPAYMSALTGSTPKREYIN 62
           K ++R G            ++R P P            ++              +     
Sbjct: 4   KRKSRRGFGRVRKLPSGRFQVRYPGPDGVLRPGDRTFATSTDADRWLMRKRIEIEEGRWL 63

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII-RKSGDFDYRKITTKHIRS 121
            P +  TT++   + +  +     L   ++ S+ S  + +I    GD +   +    +  
Sbjct: 64  DPAEGQTTVRDWSARWLAAVS-PQLKHKTQASYRSLINSLIVPALGDRELSGLRPITVAE 122

Query: 122 GVESRKHTPSSAIQFLTSMRVL---FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
            V   K    SA +   + RVL    + AV  + +   PC  V+ P+         T   
Sbjct: 123 WVGGMKSRGLSASRIRQAYRVLSQIMRSAVDNDMIPQTPCRGVKLPRMPQTEPHILTP-- 180

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---------------NNIFS 223
           ++  +   S      L    L Y+GLR  ++       +                N    
Sbjct: 181 LEASRIVRSAAKPHDLLIALLAYAGLRVGEAFALRRVDIDVSGGFVLVDENLAEANGTLV 240

Query: 224 IKTQKTGTIITVELPDGFMK----LLAMTPIGKET-FFINNDKQKMNA-TQFSIWFKAKA 277
             T K+     + +     K     L   P G +   F+    + +        +F    
Sbjct: 241 FDTPKSHQKRLLRVGPSLAKRLGRHLETLPGGDDALLFLTPGGKPLRYNQWRKAYFDPAV 300

Query: 278 TKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTK 324
           + AG+ + + H +R    T  AD            G          Y +
Sbjct: 301 SAAGLTDVTPHDLRASHGTWVADRYG-VMTAAHRLGHSNASVTTRHYAR 348


>gi|104781351|ref|YP_607849.1| site-specific recombinase [Pseudomonas entomophila L48]
 gi|95110338|emb|CAK15045.1| putative site-specific recombinase, integrase family [Pseudomonas
           entomophila L48]
          Length = 349

 Score = 90.1 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 54/354 (15%), Positives = 108/354 (30%), Gaps = 50/354 (14%)

Query: 2   TPSLRLPPFVT-KERTRH-GKII--YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPK 57
           T +  LPP +  ++R R  GK+   YY     G+ I L    +        + L      
Sbjct: 6   TENRHLPPRLYERKRKRKSGKVWVSYYCLDRSGKEITLGA--DLNIARLKWAELEAKDKP 63

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK 117
           R+ +         +K +   Y++       A  ++    +   Q+     +     IT  
Sbjct: 64  RDLLL--------MKAIFDRYQRDVI-PKKAERTQKDNLAELRQLRPFFDEAPIDAITPA 114

Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI-NPCLSVERPKRKTEGIRPWTK 176
            +    ++R   P  A + +  +  ++  A    +    NPC  V + K           
Sbjct: 115 LVAQYRDARSA-PVRANREIALLSHVYNLAREWGFTTKENPCQGVRKNKETPRDFYA-ND 172

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
              +       E  +  +A +    +G R +D        +++    +K +KT   + + 
Sbjct: 173 AVWRAVYGKAVEELK--VAMDLAYLTGQRPADVLVMRKDDIEDKALGVKQKKTHKKLRIL 230

Query: 237 LP-DGFMK---------LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA 286
           L  DG            L      G     + +  +++ A      +     +A    +A
Sbjct: 231 LEVDGLASGLGVLIEEVLKRNAAHGSPYLILTDAGKRVTAAMLRHRWDDAREEAVKEATA 290

Query: 287 HG---------------VRKFSATISADAGATAHELMATYGWKTVDQAET-YTK 324
            G               +R  +A+  A             G    D  E  Y +
Sbjct: 291 AGDQVLASRISQFQFRDIRPKAASEIA----DVDHASLLLGHTKGDITERVYRR 340


>gi|237709368|ref|ZP_04539849.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|229456424|gb|EEO62145.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
          Length = 372

 Score = 89.7 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 42/270 (15%), Positives = 87/270 (32%), Gaps = 22/270 (8%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQII--RKSGDFDYRKITTKHIRSGVESRKH--T 129
           LI ++  + H        +    +    +    +        +T     + +E  +    
Sbjct: 97  LIGQFLDTYH-----KKDKKMVRACITHLRLFTRKKSLPVTLLTKDFCINFLEYLRDHLR 151

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            ++ I +    R+     + ++ +  NP   +   +         + +++Q+        
Sbjct: 152 GNTPIGYFKKFRMCINKCIEKKLMTSNPTDGIRLMQFDEVTKAILSLKEIQKLAITPCPN 211

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQK-----TGTIITVELPDGFM 242
           ++ + AF F  Y GLR  D  +   + +   +N  +I  QK        I+ + L    +
Sbjct: 212 NEVKRAFLFSCYCGLRWCDVHQLQYKDIDFSSNRLTILQQKVQSHSKNAILHLNLNHTAI 271

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
           KLL       E                + W K    +A ++K  + H  R    T     
Sbjct: 272 KLLQRHKGINEDLVFGLPSYSYTLRILNKWVK----RANIHKHITFHCARHSFITNIMAN 327

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIR 330
           GA      +  G  T    E Y    D ++
Sbjct: 328 GANIKTAASLAGHSTTRHTEKYVHIIDELK 357


>gi|237725065|ref|ZP_04555546.1| conserved hypothetical protein [Bacteroides sp. D4]
 gi|229436803|gb|EEO46880.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
          Length = 372

 Score = 89.7 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 42/270 (15%), Positives = 87/270 (32%), Gaps = 22/270 (8%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQII--RKSGDFDYRKITTKHIRSGVESRKH--T 129
           LI ++  + H        +    +    +    +        +T     + +E  +    
Sbjct: 97  LIGQFLDTYH-----KKDKKMVRACITHLRLFTRKKSLPVTLLTKDFCINFLEYLRDHLR 151

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            ++ I +    R+     + ++ +  NP   +   +         + +++Q+        
Sbjct: 152 GNTPIGYFKKFRMCINKCIEKKLMTSNPTDGIRLMQFDEVTKAILSLKEIQKLAITPCPN 211

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQK-----TGTIITVELPDGFM 242
           ++ + AF F  Y GLR  D  +   + +   +N  +I  QK        I+ + L    +
Sbjct: 212 NEVKRAFLFSCYCGLRWCDVHQLQYKDIDFSSNRLTILQQKVQSHSKNAILHLNLNHTAI 271

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
           KLL       E                + W K    +A ++K  + H  R    T     
Sbjct: 272 KLLQRHKGINEDLVFGLPSYSYTLRILNKWVK----RANIHKHITFHCARHSFITNIMAN 327

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIR 330
           GA      +  G  T    E Y    D ++
Sbjct: 328 GANIKTAASLAGHSTTRHTEKYVHIIDELK 357


>gi|261855921|ref|YP_003263204.1| integrase family protein [Halothiobacillus neapolitanus c2]
 gi|261836390|gb|ACX96157.1| integrase family protein [Halothiobacillus neapolitanus c2]
          Length = 329

 Score = 89.7 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 46/269 (17%), Positives = 86/269 (31%), Gaps = 23/269 (8%)

Query: 87  LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA--IQFLTSMRVLF 144
           LA  ++ ++   + Q+     D D  K      R       H   S    + +       
Sbjct: 30  LAPKTQAAYLGDWQQLQSHLHDQDVIKPDQIDDRRLRGYLAHCRESGLDNRSIARKSSAT 89

Query: 145 KWAVR--QEYVAINPC--LSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAF 196
           +W +R  Q+     P    +++ PK   +       E M Q             + R  F
Sbjct: 90  RWLLRYWQKIHIACPASPDALKSPKAAKKLPDAPAIETMNQLLDQPMVEDELLIRDRCMF 149

Query: 197 EFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGTIITVEL----PDGFMKLLAMTPI- 250
           E +  SGLR ++  R  V  +      +  T K      V +     D     L +    
Sbjct: 150 ELIYSSGLRVAELVRLDVHDIDRSEGIARVTGKREKTRLVPVGGKALDRVALWLPIRKTL 209

Query: 251 ----GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATA 304
                +   F+N   Q++      +     A +  + ++   H +R   AT   ++    
Sbjct: 210 LKDTTEPALFLNRRGQRLTIRSVQMRLNRLAQQTHLGQTLHPHQLRHAFATHVLESSGDL 269

Query: 305 HELMATYGWKTVDQAETYTKGADRIRLGI 333
             +    G +++   + YT   D  RL  
Sbjct: 270 RAVQEMLGHESLSTTQIYTH-LDFQRLAQ 297


>gi|84496794|ref|ZP_00995648.1| putative phage integrase [Janibacter sp. HTCC2649]
 gi|84383562|gb|EAP99443.1| putative phage integrase [Janibacter sp. HTCC2649]
          Length = 394

 Score = 89.7 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 42/297 (14%), Positives = 93/297 (31%), Gaps = 29/297 (9%)

Query: 49  SALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD 108
                +   +    +P +   T+K +   +   +        +R  +E      +     
Sbjct: 54  REAAAADNHKGAFIAPSEGKATVKEMADRWLNGSKAAKWKPRTRAGYEGIVRHRLAPLHA 113

Query: 109 FDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165
              + +T   + + + S       PS+       +    + AVR   +  NPC  V+RP 
Sbjct: 114 HAVKDVTPAVVDAFLASMLKEGLAPSTVRHVYHVLNQSLRLAVRDRLILANPCADVDRPG 173

Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRLA-----FEFLLYSGLRCSDSCRAGVQH---- 216
              +      ++++++  +  ++    R A      E   Y+GLR  +     V      
Sbjct: 174 LVRDKPAIPERDEVEKLLNALADLPHDRAAEWSLYAEVAAYAGLRAGEITGLRVSALLPL 233

Query: 217 ------------LQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK--ETFFINNDKQ 262
                       +  ++ +   +       V LP      L    +GK  + +   +   
Sbjct: 234 ENSLLVNETVTVISGSLSAGTPKSRAGKRRVPLPPSLSARLIALSMGKARDAYVFGDGTT 293

Query: 263 KMNATQFSIW-FKAKATKAGVN-KSAHGVRKFSATISADA-GATAHELMATYGWKTV 316
                 F    F+  A   G+   + H +R F A++       +A ++    G    
Sbjct: 294 PFRHGNFYRRVFRPAAAAVGLPTLTFHQLRHFYASVLLTNPNLSAVDIAKVLGHADA 350


>gi|66395462|ref|YP_239821.1| ORF012 [Staphylococcus phage 2638A]
 gi|62635889|gb|AAX91000.1| ORF012 [Staphylococcus phage 2638A]
          Length = 345

 Score = 89.7 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 37/270 (13%), Positives = 97/270 (35%), Gaps = 20/270 (7%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRSGVESRKHT 129
            K  I  Y+++     ++ N+   +      I   K G  +  KI  +  +  +      
Sbjct: 60  FKNWIETYKENI----VSENTFRHYRFTLKHIQRHKIGKVEISKINKQMYQKFINDFSEN 115

Query: 130 PS--SAIQFLTSMRVLFKWAVRQEYVAINPCLSV--ERPKR-KTEGIRPWTKEDMQQFKS 184
            +  +  +   +++   + AV    +A NP   +  +  K  K+E  +  + E+ +  K 
Sbjct: 116 RAKETIRKTNGAIKSALEDAVYDGLIAKNPTYKITFKAGKTTKSEEEKYISLEEYKALKE 175

Query: 185 FWSE-GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTGT-IITVEL-PD 239
           +  +  S+  LA   ++ +G R S      ++++    +   I   KT +    V +  +
Sbjct: 176 YLKDKSSKSALALYIMICTGCRVSGVRSMKLEYINEFRSELYIDEHKTDSSPRYVAVGKN 235

Query: 240 GFMKLLAMTPIGK---ETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSAT 295
               ++ +        + +   +  + ++    +   K      G+N  ++H +R    +
Sbjct: 236 DLRHIINVIKNSTISYDGYIFKDSGKLISINAINKTLKKACESLGINYITSHALRHTHCS 295

Query: 296 ISADAGATAHELMATYGWKTVD-QAETYTK 324
                  + + +    G K +      Y+ 
Sbjct: 296 YLLAKDISIYYISKRLGHKNISITTSIYSH 325


>gi|291529765|emb|CBK95351.1| Site-specific recombinase XerD [Eubacterium rectale M104/1]
          Length = 367

 Score = 89.7 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 53/329 (16%), Positives = 103/329 (31%), Gaps = 48/329 (14%)

Query: 41  STFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS-------EYRKSAHW--GSLAVNS 91
             F   Y+ ++ G T     +   ++    L WL+        +Y     +    L    
Sbjct: 25  PDFCAGYIRSIAGYTKPLTQLAYLQRIQFFLMWLLDYNVYFNKKYDSIEQFTVQDLDRLK 84

Query: 92  RISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQE 151
           +  FE + + I +K G    ++     +++G        S+   +L+++R L+ + +  +
Sbjct: 85  KADFEEFLNHI-QKYGAV-LKEELDARMQTGKYIVPSKSSTRNNYLSALRSLYNYFLEND 142

Query: 152 YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----------------QPRLA 195
            V   P L + + K         T    +        GS                +    
Sbjct: 143 IVDKAPVLKIRQKKVDKTIPIALTDRQAESIYDTILGGSEQISARQEASRIITSARDLAI 202

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE--------LPDGF----- 241
           +   L++G+R S+     V+ +  +    K  +K G    V         L D       
Sbjct: 203 YTLALHTGIRVSELVSLDVRDINLDEHCFKIIRKRGNEDVVYFDNTTENVLLDWLDERRN 262

Query: 242 MKLLAMTPIGKETFFINNDKQKM----NATQFSIWFKAKATKAGVNKS---AHGVRKFSA 294
           MK        ++  F++   +K     +     I  K  A  A    +   AH +R   A
Sbjct: 263 MKETLGIADDEDALFVSTKGKKRGTRLSVRSVEIMVKKYAQIAAPEVTNFHAHSLRSSCA 322

Query: 295 TISADAGATAHELMATYGWKTVDQAETYT 323
           T   D         +  G   +     Y 
Sbjct: 323 TKIYDKSLDLVYTQSVLGHANISTTMRYV 351


>gi|262041740|ref|ZP_06014929.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259040907|gb|EEW41989.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 417

 Score = 89.7 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 47/301 (15%), Positives = 97/301 (32%), Gaps = 57/301 (18%)

Query: 75  ISEYRKSAHWGSLA-----VNSRISFESYFDQIIRKSG----DFDYRKITTKHIRSGVES 125
           I+    S  W  L       N+   +ES    ++ + G         +    ++R  + S
Sbjct: 82  ITVKELSEKWLDLKRMEICANALDRYESVVRNMLLRIGGNKLSSSVTREDLLYVRKDMLS 141

Query: 126 --RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
             +  + ++   ++T++  +F++A    Y+  NP   +   KR      P T+++  +F 
Sbjct: 142 GGKGLSVATVNYYMTTIAGMFQFAADNGYIRENPFNGIRPLKRARIEPDPLTRDEFIRFI 201

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-------------- 229
                  Q +  +   +Y+GLR  +      + +     ++  ++               
Sbjct: 202 DACP-HQQTKNLWSVAVYTGLRHGELVSLAWEDIDLKAGTMTIRRNYTKLGDFTLPKTEA 260

Query: 230 GTIITVELPDGFMKLLA----------------------MTPIGKETFFIN--------N 259
           GT   V L    +  L                        T I   TF  N        N
Sbjct: 261 GTDRVVHLIKPAISALRNQAEMTRLGRQYQIEVQLREYGRTAIHDCTFVFNPLLVRKSSN 320

Query: 260 DKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
                        ++A   ++G+ ++ A+  R   A  S  AGA    + +  G  +   
Sbjct: 321 VGYHYKVDSIGDSWEAALKRSGLRHRKAYQSRHTYACWSLSAGANPSFIASQMGHTSAQM 380

Query: 319 A 319
            
Sbjct: 381 V 381


>gi|152996970|ref|YP_001341805.1| phage integrase family protein [Marinomonas sp. MWYL1]
 gi|150837894|gb|ABR71870.1| phage integrase family protein [Marinomonas sp. MWYL1]
          Length = 283

 Score = 89.7 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 39/250 (15%), Positives = 87/250 (34%), Gaps = 20/250 (8%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG----VESRKHTPSSAIQFLTSMR 141
             +V+++ ++     ++ R        ++    I+      +  R  + SS  Q L ++ 
Sbjct: 16  GFSVSTQRAYLYQLTEVARYF-RMPPDRLNQTDIQQYLLYLIRERGWSWSSCRQALHALN 74

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201
            L++    +      P +S+  P +  +       +++Q       +  +  +A      
Sbjct: 75  FLYRKVANKTM----PSVSLPHPNKSQKIPDLLYPDEVQAMI-RCCQHPKVYVAMVLAYT 129

Query: 202 SGLRCSDSCRAGVQHLQN--NIFSIKTQKTGTIITVELPDGFMKLLAM-----TPIGKET 254
           +G+R S+     V  L    +   ++  K      V  P    ++L        P     
Sbjct: 130 TGMRISEVNELRVNDLDLTHHCIKVRQGKGQQDRYVLFPQSLQQVLGRYWQRYEPCDVVV 189

Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYG 312
           + ++   + +++    +  K  A +AG+ K    H +R   A     AG     L A  G
Sbjct: 190 YGLDKH-RPLHSKYLRLETKEAAKRAGIQKCIRFHSLRHAFACHQLLAGMPLLRLQALLG 248

Query: 313 WKTVDQAETY 322
            K +     Y
Sbjct: 249 HKQIQTTFRY 258


>gi|258454466|ref|ZP_05702433.1| integrase [Staphylococcus aureus A5937]
 gi|437117|gb|AAA91615.1| integrase [Staphylococcus phage phi-42]
 gi|257863323|gb|EEV86084.1| integrase [Staphylococcus aureus A5937]
          Length = 345

 Score = 89.7 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 50/325 (15%), Positives = 110/325 (33%), Gaps = 26/325 (8%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT--TLKWLIS 76
           GK   Y  K  G+R R               A +    K   + S        TL+    
Sbjct: 8   GKKWQYEFKHEGKRYRKKGFRTK------REANSAGLDKLNELRSGFNIDNYITLEEYFE 61

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRSGVE--SRKHTPSSA 133
            + K+     +  N+   + +    I + K G  +  KI  +  +  +   S++H   + 
Sbjct: 62  NWIKTYKQPVVKENTYRHYRNALQHIQKHKIGKMELSKINRQVYQKFINDYSKEHAKETI 121

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSV-----ERPKRKTEGIRPWTKEDMQQFKSFWSE 188
            +   ++R     A+    +  NP   V     +  K + E     T+ ++ +      +
Sbjct: 122 RKTNGAIRSALDDALYDGLIFKNPAYKVNYKAGKPTKSEQEKFISVTEYEILK-DHVRKK 180

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTG-TIITVELPDG----F 241
            ++  LA   ++ +G R S +    ++H+    N   I  +KT  +   + +        
Sbjct: 181 RTRSSLALFIMICTGCRVSGARNIKIEHINQVKNTIFIDERKTDTSPRYISIAKSDMKHI 240

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADA 300
           M +++   I  + +        +N    +   K+      +   ++H +R    +     
Sbjct: 241 MDVISTFAISYDGYIFKEAGSIINLQAINNALKSACRVNNIPIITSHALRHTHCSYLLAK 300

Query: 301 GATAHELMATYGWKTVD-QAETYTK 324
           G + H +    G K +      Y+ 
Sbjct: 301 GVSIHYISKRLGHKNIAITTSVYSH 325


>gi|284991910|ref|YP_003410464.1| integrase family protein [Geodermatophilus obscurus DSM 43160]
 gi|284065155|gb|ADB76093.1| integrase family protein [Geodermatophilus obscurus DSM 43160]
          Length = 309

 Score = 89.7 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 41/292 (14%), Positives = 92/292 (31%), Gaps = 24/292 (8%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQI----IRKSGDFDYRKITTKHIRSGVESR 126
              L  ++  +    + + N+   +    D++    I   G      +T   +   +   
Sbjct: 15  WTALRRDFATTLRAENKSPNTVRLYTGAVDKLSAWCIETGGPASPLAVTRGDLTRFMADM 74

Query: 127 KH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
           +    P +      +++  F W VR+E +  +P   +  P      +   T   +++  +
Sbjct: 75  QTEWKPGTCSLVYRALQQFFGWMVREEEIEKSPMEGMRPPHTPEVPVPVLTDLQLRELLA 134

Query: 185 FWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV----- 235
             +  S    +        + +G R ++     V  +     +I+    G  I V     
Sbjct: 135 TCNGRSFTDRRDHAMIRLFVDTGCRRAEIAELAVDSVDLANQTIQVLGKGRRIRVVPFGS 194

Query: 236 ----ELPDGFMKLLAMTPIGKETFFINNDKQ-KMNATQFSIWFKAKATKAGV-NKSAHGV 289
                L                  +++   +  ++        + +    G+ N  AH  
Sbjct: 195 RTAQALGRYLRMRDKDPWAHTGHLWLSEKGRGPLSPGGIVQMLERRGRSVGITNLHAHQF 254

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIRLGIKNSRRIS 340
           R  +A      G +  +LM   GW++V     Y    AD         RR++
Sbjct: 255 RHTAAHRWGANGGSETDLMRLMGWRSVQMLRRYAASTADER--ARDAHRRMA 304


>gi|254428215|ref|ZP_05041922.1| site-specific recombinase, phage integrase family protein
           [Alcanivorax sp. DG881]
 gi|196194384|gb|EDX89343.1| site-specific recombinase, phage integrase family protein
           [Alcanivorax sp. DG881]
          Length = 405

 Score = 89.7 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 56/310 (18%), Positives = 107/310 (34%), Gaps = 38/310 (12%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNS--RISFESYFDQIIRKSGD 108
            TG+ P +E     +    T+K L  ++ ++     L   +  +  ++    +I    G 
Sbjct: 76  RTGTDPIQERAKVVQPDIRTVKDLFQDWHETDLSRRLKHPNIPKRIYQK---EIHPVIGL 132

Query: 109 FDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV---ER 163
           +    +T + IR+ ++   R + P+ A   L  M+ LF+  ++ +    NP       + 
Sbjct: 133 YPIADVTPRDIRAVLQRVQRSNRPTIANDTLMYMKQLFRHGIKLDLCQNNPASPFTVSDA 192

Query: 164 PKRKTEGIRPWTKEDMQQ----FKSFWSE-GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218
              +    R  T E+++     F+   S  G     A    L  G+R S+ C A  +   
Sbjct: 193 GGVEASRERTLTLEEIEHSFGVFREHISSFGRDNYRACCLFLVLGVRKSELCEARWEEFD 252

Query: 219 NNIFSI----KTQKTGTIITVELPDGFMKLLAMT---PIGKETFFINND---KQKMNATQ 268
                     +  KTG  IT+ LP   ++ L +      G    F       +  M    
Sbjct: 253 LEAGIWDLSKERSKTGASITIPLPTQAIEWLKVQQGHACGSPYVFPARRASKRPHMGPDT 312

Query: 269 FSIWF-KAKATKAGVNK------------SAHGVRKFSATISADAGATAHELMATYGWKT 315
            +    K    +AG               + H +R+   +++A  G  +H        K 
Sbjct: 313 LNRAISKLFGREAGRKVQPPNKMDDLEHFTIHDLRRTFRSLAAAEGVPSHVAERCLNHKL 372

Query: 316 VDQAETYTKG 325
                 Y + 
Sbjct: 373 KGVEGIYDRY 382


>gi|154495043|ref|ZP_02034048.1| hypothetical protein PARMER_04089 [Parabacteroides merdae ATCC
           43184]
 gi|154085593|gb|EDN84638.1| hypothetical protein PARMER_04089 [Parabacteroides merdae ATCC
           43184]
          Length = 392

 Score = 89.7 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 37/260 (14%), Positives = 87/260 (33%), Gaps = 26/260 (10%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVESRKHTPSSAIQFLTSMR 141
            +L +++  +  S    + +      +  +T          +  +K+  ++  + +  ++
Sbjct: 121 SNLRLSTLKNHLSTLQVLCQYQPQVSFDDLTFNFLCGFEHFLLEQKYHRNTIAKHMKHLK 180

Query: 142 VLFKWAVRQEY--VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL----A 195
                A+ ++   +   P    +    +++     T E++ + ++   +  +        
Sbjct: 181 RYVNLAINKDLFELQKYPFRKYKIKYMESKRGH-LTPEELGRLENIAPKLQRTLRRTLDM 239

Query: 196 FEFLLYSGLRCSDSCRAGVQH---LQNN-IFSIKTQKTGTIITVEL-----PDGFMKLLA 246
           F F  Y+GLR SD       +   + +       + KT   + + L              
Sbjct: 240 FLFSCYTGLRFSDIVNIRPDNFHLIDDKLWLVYSSVKTDVNVRLPLFLLFDGKALAVYER 299

Query: 247 MTPIGKETFFINNDKQKMNATQ-FSIWFKAKATKAGVNK--SAHGVRKFSATISADAGAT 303
                  T F       ++A    +   K     A ++K  S H  R  +AT+    GA 
Sbjct: 300 YCKRYSRTLF----GVSVSANSNVNKQLKRICRLAEIDKRLSFHMARHTNATLLLYNGAN 355

Query: 304 AHELMATYGWKTVDQAETYT 323
              +    G K+V   E Y+
Sbjct: 356 ITTVQKLLGHKSVRTTEIYS 375


>gi|319902467|ref|YP_004162195.1| integrase family protein [Bacteroides helcogenes P 36-108]
 gi|319417498|gb|ADV44609.1| integrase family protein [Bacteroides helcogenes P 36-108]
          Length = 418

 Score = 89.7 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 49/274 (17%), Positives = 90/274 (32%), Gaps = 36/274 (13%)

Query: 75  ISEYRKSAHWGS-----LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           IS YR S ++       L  N +       + +  + G      +          ++   
Sbjct: 125 ISSYRASRYYQQYVSEFLLSNGKKDI--LLEDVTEEFGKSLKAYLK--------NAKNLG 174

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
                  L  +  L   AV +E + +NP   VE  K+     R  ++++ ++  +     
Sbjct: 175 YGQINHSLRWLNRLMYLAVDKEIIRVNPIEDVEYEKKPAPKHRYISRDEFKKILATPMHD 234

Query: 190 SQ---PRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-----FSIKTQKTGTIITVELPDGF 241
            +    R AF F   +GL  +D       H+  N        I  +KT     + L    
Sbjct: 235 RRMELARHAFIFSSLTGLAYADIELLYPHHIGANAEGRRYIRINRRKTKIEAFIPLHPIA 294

Query: 242 MKLLAMTPIGKETFFINNDKQKMNA--TQFSIWFKAKATKAGVNK----SAHGVRKFSAT 295
            K+L         +   ND+Q +    ++ ++WF+       + K    S H  R    T
Sbjct: 295 EKILT-------LYNTTNDEQPVFPLPSRDALWFEIHELGVAIGKEENLSYHAARHSFGT 347

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
               AG     +    G   +   + Y +  D  
Sbjct: 348 FLISAGLPIESIAKMMGHSNISTTQGYARITDDK 381


>gi|317475117|ref|ZP_07934385.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
 gi|316908761|gb|EFV30447.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
          Length = 421

 Score = 89.7 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 45/275 (16%), Positives = 99/275 (36%), Gaps = 26/275 (9%)

Query: 90  NSRISFE---SYFDQIIRK---SGDFDYRKITTKHIRSGVESRKH----TPSSAIQFLTS 139
            +   +E    Y ++ I+K     D     +    I       K       +SAI  L +
Sbjct: 147 KTVQRYETTTRYLEEFIKKEYQLSDIALNNLEANFISKFDAFLKIEKGCAQNSAITRLKN 206

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLAF 196
           ++ + + A+  +++  +P  +  R K +    +  T ++++   +         Q R  F
Sbjct: 207 LKKIIRIALENDWIKKDP-FAYYRFKLEETDPKFLTMDEIKIILAKEFTIKRVEQVRDVF 265

Query: 197 EFLLYSGLRCSDSCRAGVQH-LQNN----IFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251
            F +++GL  SD      +H +++N          QKT  +  + +      +L      
Sbjct: 266 IFCVFTGLAFSDVKDLSPEHLVKDNKGELWIRKNRQKTKIMCNIPVLPVATSILEKYKNV 325

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATIS-ADAGATAHELM 308
            E          ++  + + + K  A   G+ K+   H  R   AT      G +   + 
Sbjct: 326 AE--CTGKLLPVLSNQRMNSYLKEIADVCGLQKNLCTHSARHSYATSICLANGVSMENVA 383

Query: 309 ATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343
              G       + Y +  D+     K+ ++++S +
Sbjct: 384 KMLGHADTSVTKHYARVLDQN--IFKDMQKVNSCL 416


>gi|315615273|gb|EFU95909.1| integrase [Escherichia coli 3431]
          Length = 343

 Score = 89.7 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 44/318 (13%), Positives = 88/318 (27%), Gaps = 39/318 (12%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87
            +G+R+R           A+ S       K+ ++   +     L  LI  +         
Sbjct: 20  RNGKRVR-KQFATKGEAIAFESFTMEEVNKKPWLG-EKDDRRRLSELIELWY---SLYGQ 74

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--------------TPSSA 133
            +       +    I    GD    ++T        E+R                 P + 
Sbjct: 75  TLADPKRLMAKLRIICNGLGDPIASELTAGDFTKYREARLKGEIRNEDGTLMSPVKPRTV 134

Query: 134 IQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
                ++  +F    +   + A NP   +   K     +   + +++++  +  +E   P
Sbjct: 135 NLEQRNLSSVFGTLKKLGHWSAPNPLAGLPTFKIAEGELAFLSTDEIKRLLAACAESQSP 194

Query: 193 RLAF--EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250
            L    +  L +G R S++       L     +    K     TV +       L     
Sbjct: 195 SLLMIAKICLATGARWSEAENLQGHQLSKYRITYTKTKGKKNRTVPISQDLYNELPK--- 251

Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGV----NKSAHGVRKFSATISADAGATAHE 306
                   N  +          F+    +AG+     +  H +R   A+     G     
Sbjct: 252 --------NRGRLFTP--CRKAFERAVKRAGIELPEGQCTHVLRHTFASHFMMNGGNILV 301

Query: 307 LMATYGWKTVDQAETYTK 324
           L    G   +     Y  
Sbjct: 302 LRDILGHADIKMTMIYAH 319


>gi|291544082|emb|CBL17191.1| Site-specific recombinase XerD [Ruminococcus sp. 18P13]
          Length = 362

 Score = 89.7 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 52/288 (18%), Positives = 99/288 (34%), Gaps = 39/288 (13%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR-- 126
           T +     YR       L  NS ++ E   + +I+   G     +I+ K I +       
Sbjct: 57  TFEAFYELYRNDMR-PRLKENSWMTKEHIVETKIMPYFGKRSLSEISNKDIMAWQNELLA 115

Query: 127 ----KHTPSSAIQFLTS---MRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKED 178
               KH P S     T    +  +   AVR   +  NP   V      + + ++ WTKE+
Sbjct: 116 YRDEKHKPYSQTYLKTVHNQLSAILNHAVRHYGLHCNPASKVGNMGTEERKEMKFWTKEE 175

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK---------- 228
            ++F     +      AFE L + G+R  +           +  +++  K          
Sbjct: 176 YKKFSDEMMDKPVSFYAFEVLYWCGIREGELLALTPSDFDFDKGTLRINKSYQRLHGEDV 235

Query: 229 ------TGTIITVELPDGFMK-----LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKA 277
                   +  T+++PD   +     L  +  + K     N  K  +         +  +
Sbjct: 236 ITTPKTKKSNRTIKMPDFLCEEMQDYLGMLYDVDKNDRIFNISKHYLGRE-----MERGS 290

Query: 278 TKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             AGV +   H +R    ++  D G +A  +    G ++++    Y  
Sbjct: 291 KAAGVKRIRIHDLRHSHISLLIDMGFSAVAIADRVGHESIEITYRYAH 338


>gi|265763426|ref|ZP_06091994.1| transposase [Bacteroides sp. 2_1_16]
 gi|263256034|gb|EEZ27380.1| transposase [Bacteroides sp. 2_1_16]
          Length = 308

 Score = 89.7 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 37/281 (13%), Positives = 90/281 (32%), Gaps = 38/281 (13%)

Query: 81  SAHWGS-----LAVNSRISFESYFD-QIIRKSGD-FDYRKITTKHIRSGVESRKHTPSSA 133
           S  W       +  ++  ++    +  I+   G+ +   +   +           +  S 
Sbjct: 10  SVAWKEYKQPYVKQSTMAAYVLILENHILPNFGESYALHEQAVQDFVLRKIENGMSVKSV 69

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK-TEGIRPWTKEDMQQFKSFWSEG-SQ 191
              L  ++++ K+ V+ E++       ++ P    T+ +   +  + ++  S      S 
Sbjct: 70  KDILIVLKMVMKFGVKNEWMDYQE-WDIKYPSPSITKELEVLSVANHKKILSHIQSHFSF 128

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------------- 235
             L     L +GLR  + C      +  +  +I   +T   I +                
Sbjct: 129 AGLGIYISLCTGLRIGEVCALKWSDINVSEGTITVNRTIERIYIINGMEKHTELVINTPK 188

Query: 236 --------ELPDGFMKLLAMTP--IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284
                    +    + ++      + +E + + ND+       +  ++     K G+ K 
Sbjct: 189 TQNSCREIPITKELLAMVKPLKKVVNEEFYVLTNDEYPTEPRTYRNYYGKLMAKLGIPKL 248

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
             HG+R   AT   +AG     +    G   +    + Y  
Sbjct: 249 KYHGLRHSFATRCIEAGCDYKTVSVLLGHSNISTTLDLYVH 289


>gi|260593258|ref|ZP_05858716.1| integrase [Prevotella veroralis F0319]
 gi|260534815|gb|EEX17432.1| integrase [Prevotella veroralis F0319]
          Length = 409

 Score = 89.7 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 42/253 (16%), Positives = 83/253 (32%), Gaps = 22/253 (8%)

Query: 89  VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG----VESRKHTPSSAIQFLTSMRVLF 144
            ++R   + +  +      D  + ++T   I       +    H  S+  +    ++ + 
Sbjct: 138 HSTRKRLQEFIQK-KYHVSDLAFSQLTESFIYELQTFCLGELGHQQSTFFRVAADLKTVC 196

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-----FKSFWSEGSQPRLAFEFL 199
           + A R+          V   +   +  +   KE + +     F     E    R  F F 
Sbjct: 197 RLAYREGLADTLLFDKVHIERGDKKAPKALDKEALDKLKALRFDELEEEMETARDVFLFA 256

Query: 200 LYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254
            Y+G    D      +HL  +           QKTG +  ++L    ++L+      +  
Sbjct: 257 CYTGAAYCDLMELSKKHLVRDDAGSLWLKFSRQKTGVLCRIKLLPEAVRLIEKMHSDERE 316

Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS-ADAGATAHELMATY 311
             + + K       +    KA   +AG+    ++H  R   AT+   + G     +    
Sbjct: 317 TLLPHIKYP----TYQSCLKALRLRAGISFPFTSHTARHTFATLITLEQGVPIETVSKML 372

Query: 312 GWKTVDQAETYTK 324
           G   V   E Y K
Sbjct: 373 GHTNVSMTERYAK 385


>gi|227889876|ref|ZP_04007681.1| phage integrase/recombinase [Lactobacillus johnsonii ATCC 33200]
 gi|227849567|gb|EEJ59653.1| phage integrase/recombinase [Lactobacillus johnsonii ATCC 33200]
          Length = 322

 Score = 89.7 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 40/291 (13%), Positives = 105/291 (36%), Gaps = 15/291 (5%)

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121
             PRK+  + K  ++++ ++      +  +   +    +Q++ K      R++TT+ +R 
Sbjct: 35  REPRKRKISNKEYLAKFLEAKKMEGCSDRTIKYYRVTVEQLLNKV-VRPVRRVTTEEMRE 93

Query: 122 GVESRKH----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
            +   +       ++      ++   F W   ++Y+  +P   + + + +       T E
Sbjct: 94  YLVDYQKINNCGKTTVDNIRRNISSFFSWLEEEDYILKSPMRRIHKIRAEKLVKNVITDE 153

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVE 236
           D+++ +   S   +     + L  +G+R  +  R     +  +    +   K      V 
Sbjct: 154 DIEKLRDGCSC-LRDVAMIDLLYSTGIRVGELVRLNKTDINFSERECVVFGKGDKERRVY 212

Query: 237 LPDG----FMKLLAMTPIGKETFFINNDKQ--KMNATQFSIWFKAKATKAGVNK-SAHGV 289
                    +  L          F++ D+   ++  +   I  +    K  +++   H  
Sbjct: 213 FDAKSKVHLINYLKSRTDDNPALFVSLDRPNDRLKISGVEIRLRQLGRKLHLDRIHPHKF 272

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
           R+  AT + D G    ++    G   +D    Y    ++  +   + + IS
Sbjct: 273 RRSMATRAIDKGMPIEQVQKILGHSQIDTTMQYA-IVNQNNVKAAHRKYIS 322


>gi|30250123|ref|NP_842193.1| integron integrase [Nitrosomonas europaea ATCC 19718]
 gi|30139230|emb|CAD86100.1| Integron integrase; Phage integrase; Phage integrase N-terminal
           SAM-like domain [Nitrosomonas europaea ATCC 19718]
          Length = 323

 Score = 89.7 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 45/310 (14%), Positives = 96/310 (30%), Gaps = 62/310 (20%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----KHT 129
           L+ + R        ++ +   +  +  + I   G    +++    + + +       K +
Sbjct: 10  LLDQVRDRIRIKHYSLRTETQYVQWIKRFILFHGKRHPQEMGAAEVEAFLTHLAVVGKVS 69

Query: 130 PSSAIQFLTSMRVLFK--WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            S+  Q L+++  L+K   ++   ++       V R K+        T+ ++Q      S
Sbjct: 70  ASTQNQALSALLFLYKEVLSIDLPWLDK-----VVRAKQPQRLPVVLTRTEVQAILVRMS 124

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGT-------------- 231
            G+   L    L  +G+R  +  R  V+ +        I+  K                 
Sbjct: 125 -GTYG-LMANLLYGTGMRLMECVRLRVKDVDFERGEILIRDGKGAKDRVTILPESLVSPL 182

Query: 232 ------------------IITVELPDGFMK----------LLAMTPIGKETFFINN---D 260
                               +V LPD   +             + P G  +    +    
Sbjct: 183 QTYLLQRRVLFDDDIRLGKASVYLPDALERKYPNAATDWIWQYIFPSGSFSIDPRSSVER 242

Query: 261 KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           +  ++        K     +G+ K  + H +R   AT   D+G     +    G K V  
Sbjct: 243 RHHIDEKLLQRAMKKAVQTSGITKLATPHTLRHSFATHLLDSGYDIRTIQELLGHKDVHT 302

Query: 319 AETYTKGADR 328
              YT   ++
Sbjct: 303 TMIYTHVLNK 312


>gi|238924066|ref|YP_002937582.1| phage integrase family protein [Eubacterium rectale ATCC 33656]
 gi|238875741|gb|ACR75448.1| phage integrase family protein [Eubacterium rectale ATCC 33656]
 gi|291528878|emb|CBK94464.1| Site-specific recombinase XerD [Eubacterium rectale M104/1]
          Length = 349

 Score = 89.7 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 52/289 (17%), Positives = 92/289 (31%), Gaps = 35/289 (12%)

Query: 77  EYRKSAHWGSLAVNSRISF-ESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQ 135
           EY KSA+  SL       +  S  DQI     D +      K+         +      +
Sbjct: 57  EYMKSAN-PSLKKYDIRDYPISLLDQISPS--DIEEYLFYLKYYEKDGVVHTNDERGIKR 113

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----- 190
            L S+R  + +  R+E++  NP   V  PK   + I     +++ Q       G      
Sbjct: 114 KLASLRTFYNFYFRKEFIDTNPASKVTLPKIHEKNIIRLDTDEVAQLLDEVESGDSLSKN 173

Query: 191 ----------QPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELP 238
                     +       LL +G+R S+     +  +   NN   +  +K G  + V   
Sbjct: 174 QQRFHEKTKVRDLALMTLLLGTGIRVSECVGLDMDDVDFKNNGIKVH-RKGGADVIVYFG 232

Query: 239 DGFMKLLA--------MTPIGKE--TFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286
           D     L         +TP        F++  +++++        K  +       N + 
Sbjct: 233 DEVRDALLSYWEERSIITPAEGHANALFLSLQRKRISVRSVENLVKKYSRLVTTVKNITP 292

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIK 334
           H +R    T         + +    G K V+   + Y    D  R    
Sbjct: 293 HKLRSTYGTTLYQETGDIYLVADVLGHKDVNTTRKHYAAQEDSRRRAAA 341


>gi|254437180|ref|ZP_05050674.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
 gi|198252626|gb|EDY76940.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
          Length = 369

 Score = 89.7 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 49/322 (15%), Positives = 112/322 (34%), Gaps = 20/322 (6%)

Query: 9   PFVTKERTRHGKIIYYFRK---GHGRRIRL-PYPHESTFIPAYMSALTGSTPKREYINSP 64
             +     +  K  +YF+K   G  +RI +  +P  S       +        R    + 
Sbjct: 38  KGLVLFVGKRSKT-WYFQKDVGGQTKRILIGRFPIISAQAARQTALGFALEMGRGAGKAA 96

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
           +    TL+  +  Y         +  ++I   +     ++        +I+         
Sbjct: 97  QIGAPTLEAAMEVYLARPKLR--SETNKIGMRAQLTLHLKDWMRLPLGEISKTMTVRRHH 154

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
               + S+A   L S R ++  A R   +   P +++E  + K +G      +  +Q   
Sbjct: 155 DMAGSSSAANHVLRSFRAIYNHARRTCDLPECPTMAIEWFEDKPDGRIIEDLKHWRQTID 214

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
                   R+ +E LL++GLR ++      + +Q +   +   K G    + +     ++
Sbjct: 215 DLPNPIH-RVFYELLLFTGLRKTEVFTLKWEQIQEDHIHLPMTKNGRSFDLPILQLHHEI 273

Query: 245 LAMT-PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGAT 303
           LA   P+ ++  F          ++     + +     +  + H  R+  AT++ +AG  
Sbjct: 274 LAPLRPLSRDWVF------PSPKSESGHITRPER----LKYNPHMHRRTFATVAMEAGVL 323

Query: 304 AHELMATYGWKTVDQA-ETYTK 324
              +        +    + YT+
Sbjct: 324 EEIVGRLLNHTPLSITGQRYTR 345


>gi|327537283|gb|EGF24020.1| phage integrase family protein [Rhodopirellula baltica WH47]
          Length = 286

 Score = 89.7 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 40/276 (14%), Positives = 79/276 (28%), Gaps = 42/276 (15%)

Query: 82  AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS-- 139
            H    A  +   +     Q+   +G     ++T +H+R      K+  + A   L    
Sbjct: 1   MHLTGKAKRTHDGYIRAVRQLSDFAG-CSPEQVTEQHVRQFFLHLKNDRNFAYGSLRVAF 59

Query: 140 --MRVLFKWAVRQEYVAINPCLSVERPKRK--TEGIRPWTKEDMQQFKSFWSEGSQPRLA 195
             ++  F    ++++        ++  K +  T      T   ++Q        +  R  
Sbjct: 60  SGIKFFFTHTCKRDW------EIIKMLKLQNITTLPEVLT---IEQVHELIGSATTQR-- 108

Query: 196 FEFLLYS----GLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAM-- 247
                ++    GLR +++    V  +        +   K      V LP   ++LL    
Sbjct: 109 MFVYFWTVYSLGLRLNEALHLQVSDIDAERGWVHVHRGKGAKDRYVPLPTTTVRLLRNYW 168

Query: 248 TPIGKETFFINNDKQ--------------KMNATQFSIWFKAKATKA--GVNKSAHGVRK 291
                       D +               M+ T      K        G   S H +R 
Sbjct: 169 ASHRHPCLLFPADGRKHDLAKDGVSQATTPMSETAVQGAMKQITKNLRFGKKVSIHTLRH 228

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
             AT   ++G     +    G  ++     Y    D
Sbjct: 229 SYATHLLESGVGLKVIQRYLGHSSLQTTLVYLHLTD 264


>gi|210610698|ref|ZP_03288579.1| hypothetical protein CLONEX_00769 [Clostridium nexile DSM 1787]
 gi|210152331|gb|EEA83337.1| hypothetical protein CLONEX_00769 [Clostridium nexile DSM 1787]
          Length = 328

 Score = 89.7 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 32/248 (12%), Positives = 77/248 (31%), Gaps = 14/248 (5%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH----TPSSAIQFLTSMRVL 143
           +  +   + +   Q++   G      I T+ +R+ +   +     +  +           
Sbjct: 67  SEKTLTYYRNTIHQMMESIGKT-VCTIETEDLRTYLSRYQAEKESSKVTIDNIRRIFSSF 125

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203
           F W   ++Y+  +P   + R K  +     +T E ++  +       +     + L  +G
Sbjct: 126 FAWLEDEDYIIKSPVRRIHRIKSASVIKETYTDEQLETMRDNCD-NLRDLALIDILASTG 184

Query: 204 LRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDG----FMKLLAMTPIGKETFFIN 258
           +R  +        +       +   K      V             L      +   F++
Sbjct: 185 MRVGELVLLNRDDISFEERECVVFGKGDKERMVYFDARTKLHLQNYLDSRTDNENALFVS 244

Query: 259 --NDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKT 315
                ++M      +  +    +  + K   H  R+  AT++ D G    +L    G + 
Sbjct: 245 LKAPYKRMKIGGIEVRLREMGKRLNIEKVHPHKFRRTLATVAIDKGMPIEQLQKLLGHQR 304

Query: 316 VDQAETYT 323
           +D    Y 
Sbjct: 305 IDTTLQYA 312


>gi|319949774|ref|ZP_08023799.1| phage-related integrase [Dietzia cinnamea P4]
 gi|319436574|gb|EFV91669.1| phage-related integrase [Dietzia cinnamea P4]
          Length = 317

 Score = 89.7 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 46/279 (16%), Positives = 87/279 (31%), Gaps = 21/279 (7%)

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK 117
           R     P     T++    ++ +   +     ++     ++  +I+   GD     +   
Sbjct: 2   RGDYIRPEDAQLTVEQWCEQWLE--AYKVHRPSTVRQARTHVKRIVAAFGDQRLSDVRPT 59

Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVL---FKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
            +RS + S +    +A         L      AV    +  +PC     P      +   
Sbjct: 60  MVRSWIASMQGEGLAASTIYALHSRLAHIMADAVHDGILQRSPCSRRTSPPMGKTKVYVA 119

Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ------- 227
           T E +        E  +P  A     ++GLR  + C   V  +     S+  +       
Sbjct: 120 TTEQIWALHDEMPEHLRP--AILLGAFAGLRLGEVCGLRVDDVDFMRGSVTPRFQAGGAP 177

Query: 228 -KT-GTIITVELPDGFMKLLAMTPI--GKETFFINNDKQKMNATQFSIWFKAKA-TKAGV 282
            KT G+ +TV +P     LL+ +    G +    N         Q     +       G+
Sbjct: 178 LKTSGSEMTVPVPRDLALLLSESVATWGTDYVVTNGLGGPARDFQVERAVREARGRVPGL 237

Query: 283 NKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQA 319
            +    H  R   A+I    GA    + A    ++    
Sbjct: 238 PERFTHHDCRHHYASILIAGGADIKTIQARMRHQSARVT 276


>gi|168210485|ref|ZP_02636110.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Clostridium perfringens B str. ATCC 3626]
 gi|170711435|gb|EDT23617.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Clostridium perfringens B str. ATCC 3626]
          Length = 368

 Score = 89.7 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 47/313 (15%), Positives = 110/313 (35%), Gaps = 40/313 (12%)

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSG 122
           P+ K   LK  I ++  +    S+ +N++ ++ S  +  I+   G++   ++ T  I++ 
Sbjct: 59  PKSKDIYLKDFILDWFYNHKILSIGINTKNNYLSRIETYIVPLLGNYKLTELDTLTIQNF 118

Query: 123 VE-----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
                       PSSA + + ++    K+A + + +   P   +E+   +   I  W+K+
Sbjct: 119 YNYLLTKDTPLKPSSAKKVIEALSNCLKYAKKLKLITYLPT-DIEKVNIEKPKIEFWSKQ 177

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ-------- 227
           ++  F +   + +           +G+R  + C      +       +I  Q        
Sbjct: 178 ELDFFLNEIKD-TYLYFPVLICALTGVRVGELCGLKWCDVDFKRGYLNITRQVISDKSTN 236

Query: 228 ---------KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN-----ATQFSIWF 273
                     T +  T+ +P   ++           F + + + +M      +  F+   
Sbjct: 237 TLVCTENLKTTKSDRTISIPKVLLREFEKNLKAPNNFIVLSRENEMCNPRNISMDFTKKV 296

Query: 274 KAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLG 332
                +     S HG+R   AT+    G     +    G   +     TYT       + 
Sbjct: 297 NKYKDRL-PQISIHGLRHTHATLLILNGENIKIVSDRLGHNDITTTLNTYTH------IM 349

Query: 333 IKNSRRISSVVDS 345
            +     + ++D+
Sbjct: 350 EEMKDNTAELLDN 362


>gi|15927578|ref|NP_375111.1| integrase [Staphylococcus aureus subsp. aureus N315]
 gi|30043990|ref|NP_835517.1| integrase [Staphylococcus phage phiN315]
 gi|258413679|ref|ZP_05681953.1| integrase [Staphylococcus aureus A9763]
 gi|258447832|ref|ZP_05695967.1| integrase [Staphylococcus aureus A6224]
 gi|282928804|ref|ZP_06336397.1| integrase [Staphylococcus aureus A10102]
 gi|13701797|dbj|BAB43090.1| integrase [Staphylococcus aureus subsp. aureus N315]
 gi|257839632|gb|EEV64102.1| integrase [Staphylococcus aureus A9763]
 gi|257858929|gb|EEV81797.1| integrase [Staphylococcus aureus A6224]
 gi|282589539|gb|EFB94627.1| integrase [Staphylococcus aureus A10102]
 gi|285817688|gb|ADC38175.1| Integrase, phage associated [Staphylococcus phage phiN315]
 gi|312830375|emb|CBX35217.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           ECT-R 2]
          Length = 345

 Score = 89.7 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 50/325 (15%), Positives = 110/325 (33%), Gaps = 26/325 (8%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT--TLKWLIS 76
           GK   Y  K  G+R R               A +    K   + S        TL+    
Sbjct: 8   GKKWQYEFKHEGKRYRKKGFRTK------REANSAGLDKLNELRSGFNIDNYITLEEYFE 61

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRSGVE--SRKHTPSSA 133
            + K+     +  N+   + +    I + K G  +  KI  +  +  +   S++H   + 
Sbjct: 62  NWIKTYKQPVVKENTYRHYRNALQHIQKHKIGKMELSKINRQVYQKFINDHSKEHAKETI 121

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSV-----ERPKRKTEGIRPWTKEDMQQFKSFWSE 188
            +   ++R     A+    +  NP   V     +  K + E     T+ ++ +      +
Sbjct: 122 RKTNGAIRSALDDALYDGLIFKNPAYKVNYKAGKPTKSEQEKFISVTEYEILK-DHVRKK 180

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTG-TIITVELPDG----F 241
            ++  LA   ++ +G R S +    ++H+    N   I  +KT  +   + +        
Sbjct: 181 RTRSSLALFIMICTGCRVSGARNIKIEHINQVKNTIFIDERKTDTSPRYISIAKSDMKHI 240

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADA 300
           M +++   I  + +        +N    +   K+      +   ++H +R    +     
Sbjct: 241 MDVISTFAISYDGYIFKEAGSIINLQAINNALKSACRVNNIPIITSHALRHTHCSYLLAK 300

Query: 301 GATAHELMATYGWKTVD-QAETYTK 324
           G + H +    G K +      Y+ 
Sbjct: 301 GVSIHYISKRLGHKNIAITTSVYSH 325


>gi|332088977|gb|EGI94089.1| integrase [Shigella boydii 5216-82]
          Length = 337

 Score = 89.7 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 43/207 (20%), Positives = 79/207 (38%), Gaps = 10/207 (4%)

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDM 179
           +   S+   PSS  + LT +  +F   +  E Y   +P    +R K +       T+E++
Sbjct: 111 ATRRSQGIKPSSINRDLTCISGMFTALIEAELYFGEHPIRGTKRLKEEKPNTGYLTQEEI 170

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239
               +    G   ++A    L +G R  ++ R   +++ +N  +    KT    TV + +
Sbjct: 171 ALLLAALD-GDNKKIAI-LCLSTGARWGEAARLKAENIIHNRVTFVKTKTNKPRTVPISE 228

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISAD 299
              K++A    G    F + D  +   T      KA      + ++ H +R   AT    
Sbjct: 229 AVAKMIADNKRG--FLFPDADYPRFRRT-----MKAIKPDLPMGQATHALRHSFATHFMI 281

Query: 300 AGATAHELMATYGWKTVDQAETYTKGA 326
            G +   L    G   ++Q   Y   A
Sbjct: 282 NGGSIITLQRILGHTRIEQTMVYAHFA 308


>gi|291547754|emb|CBL20862.1| Site-specific recombinase XerD [Ruminococcus sp. SR1/5]
          Length = 411

 Score = 89.7 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 49/347 (14%), Positives = 97/347 (27%), Gaps = 71/347 (20%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVE 124
               T+ ++   Y    +  +L   ++ ++   +D+ +    G  +  +I    +     
Sbjct: 68  AGKATVNFVFDRYMSLKN--NLKPTTKSNYLYMYDRFVRDTFGKRNIAEIKYSDVVQFYN 125

Query: 125 SRKHTPSSAIQFLTSMRVL----FKWAVRQEYVAINPCLSV-----ERPKRKTEGIRPWT 175
                    I  L ++  L    F+ AVR + +  NP   V     +    KT      T
Sbjct: 126 YLVEKQELQINTLETVHTLLHPTFQLAVRDDIIRKNPSDGVMAELKKNLGMKTGVRHALT 185

Query: 176 KEDMQQFKSF---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--------------- 217
               + F  +             F   L +G R  +      + +               
Sbjct: 186 IPQQRAFIEYIATHPIYYHWWPIFTVFLGTGCRIGEVLGLRWEDINYKKRIICVNHNLTY 245

Query: 218 ------QNNIFSIKTQKTGTII-TVELPDGFMKLLAM------------TPIGKET--FF 256
                 + +   I T KT   + T+ + D       M              I   T   F
Sbjct: 246 YPVGEDRASENHISTPKTEAGMRTIPMLDAVKDAFEMIWEEQKEKGWTDAEIDGMTGFIF 305

Query: 257 INNDKQKMNATQFSIWFKA-----------------KATKAGVNKSAHGVRKFSATISAD 299
            N     MNA   +   K                  +      N SAH +R    T   +
Sbjct: 306 CNRYGNIMNAQSVNRAIKRISSSYNATEEVEARKEHREPVLLPNFSAHNLRHTFCTRLCE 365

Query: 300 AGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVVDS 345
                  + +  G K +    + Y +  +  +   +    +++ +D 
Sbjct: 366 RETNLKVIQSIMGHKDIQTTMDIYAEATEEKK--QETFEHLAATMDV 410


>gi|331082875|ref|ZP_08331996.1| hypothetical protein HMPREF0992_00920 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330400016|gb|EGG79669.1| hypothetical protein HMPREF0992_00920 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 380

 Score = 89.7 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 39/273 (14%), Positives = 86/273 (31%), Gaps = 45/273 (16%)

Query: 90  NSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVR 149
           ++++ + +++ +I  + G      +    ++      K T ++     T +  +   AV 
Sbjct: 86  STKMLYITHYKRIQGELGWRKLTSLNLIVMQEAFNKLK-TDNTRKHSKTILVDMLNKAVD 144

Query: 150 QEYVAINPCLSVERP--KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCS 207
            + +  N    +     K + +  R  T ++ + F           L F   L +GLR  
Sbjct: 145 ADLLVKNVAKQINTVISKEEKKERRVLTVKETELFLEQAKGNFYENL-FILALETGLRVG 203

Query: 208 DSCRAGVQHLQ--NNIFSIKT-----QKTGTII-------------TVELPDGFMKLLAM 247
           +      + +   N +  ++       K G  +             T+ L    +  L  
Sbjct: 204 ELSALQWEDVDFKNKVLHVRHTLCYFSKNGKYVFEMHDTKTNNGKRTIPLTAKAIHSLKC 263

Query: 248 TPIGKE---------------TFFINNDKQKMNATQFSIWFKAKAT---KAGVNK---SA 286
             I K+                 F+    +       +   ++      KAG++    +A
Sbjct: 264 QRIQKQEIILKGRTAEEEFQNLVFVTRKNRPTKLGVINRCIRSVIQNINKAGIDFLPFTA 323

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQA 319
           H  R   AT + + G     L    G  T+   
Sbjct: 324 HTFRHTFATRAIECGMNPKTLQKILGHGTLQMT 356


>gi|300872281|gb|ADK38968.1| IntI4 [Vibrio sp. V82(2010)]
          Length = 293

 Score = 89.7 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 42/289 (14%), Positives = 86/289 (29%), Gaps = 57/289 (19%)

Query: 93  ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEY 152
            ++  +  + I          +  K +   +         A +  +       +  ++  
Sbjct: 1   RAYLHWITRYIHFHNKKHPSLMGDKEVEEFLTYLAVQGKVATKTQSLALNSLSFLYKE-- 58

Query: 153 VAINP-CLSVE--RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDS 209
           +   P  L +   R + + +     T++++++         + +L  + L  SGLR  + 
Sbjct: 59  ILKTPLSLEIRFQRSQLERKLPVVLTRDEIRRLLEIVDP--KHQLPIKLLYGSGLRLMEC 116

Query: 210 CRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLAMTPIGKETFFINN-------- 259
            R  VQ +  +  +I+    K G   TV L       L       + ++  +        
Sbjct: 117 MRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHLKEQIALAKRYYDRDLHQKNYGG 176

Query: 260 --------------------------------------DKQKMNATQFSIWFKAKATKAG 281
                                                  +  MN T      +  A +AG
Sbjct: 177 VWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVMRRHHMNETVLQKAVRRAAQEAG 236

Query: 282 VNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           + K+   H +R   AT   + GA    +    G   V   + YT   DR
Sbjct: 237 IEKTVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHVLDR 285


>gi|153827714|ref|ZP_01980381.1| chain A, Structural Basis For Broad Dna-Specificity In Integron
           Recombination [Vibrio cholerae MZO-2]
 gi|149737809|gb|EDM52714.1| chain A, Structural Basis For Broad Dna-Specificity In Integron
           Recombination [Vibrio cholerae MZO-2]
          Length = 314

 Score = 89.7 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 43/294 (14%), Positives = 89/294 (30%), Gaps = 57/294 (19%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWA 147
           A  +  ++  +  + I          +  K +   +         A +  +       + 
Sbjct: 13  AKKTIEAYLHWITRYIHFHNKKHPSLMGDKEVEEFLTYLAVQGKVATKTQSLALNSLSFL 72

Query: 148 VRQEYVAINP-CLSV--ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGL 204
            ++  +   P  L +  +R + + +     T++++++         + +L  + L  SGL
Sbjct: 73  YKE--ILKTPLSLEIHFQRSQLERKLPVVLTRDEIRRLLEIVDP--KHQLPIKLLYGSGL 128

Query: 205 RCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLAMTPIGKETFFINN--- 259
           R  +  R  VQ +  +  +I+    K G   TV L       L       + ++  +   
Sbjct: 129 RLMECMRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHLKEQIALAKRYYDRDLHQ 188

Query: 260 -------------------------------------------DKQKMNATQFSIWFKAK 276
                                                       +  MN T      +  
Sbjct: 189 KNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVMRRHHMNETVLQKAVRRS 248

Query: 277 ATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           A +AG+ K+   H +R   AT   + GA    +    G   V   + YT   DR
Sbjct: 249 AQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHVLDR 302


>gi|87200080|ref|YP_497337.1| phage integrase [Novosphingobium aromaticivorans DSM 12444]
 gi|87135761|gb|ABD26503.1| phage integrase [Novosphingobium aromaticivorans DSM 12444]
          Length = 297

 Score = 89.7 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 39/263 (14%), Positives = 82/263 (31%), Gaps = 23/263 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHIRSGVESRKHTPS------SAIQFL 137
              + ++  ++ +   + +R   G+ D+  +      +         +      SA + L
Sbjct: 18  RRRSPHTVRAYAATAARFLRGLPGEQDWSSLARIDAATLRAHLADRRADGLGNVSAAREL 77

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED-------MQQFKSFWSEGS 190
           ++++    +A  Q          +  P+ K    RP T ++       +    +     +
Sbjct: 78  SALKTFIAFAREQAGHEDASRPRLRGPRVKRGLPRPITPDEAVNLAETVADDAAVPWIAA 137

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL----- 245
           + R     L  +G+R +++       L        T K G    V L       +     
Sbjct: 138 RDRAVLLLLYGAGMRIAEALALPASALPLGEAVTITGKGGRQRVVPLLPIVRAGVDDYVR 197

Query: 246 -AMTPIGKE-TFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAG 301
               P+ K+   F       +                G+  +A  H +R   AT    AG
Sbjct: 198 QCPWPLEKDKPLFRGAKGGPLAQGMVQRAVARARIALGLPATATPHALRHSFATHLLGAG 257

Query: 302 ATAHELMATYGWKTVDQAETYTK 324
           A    L    G  ++   + YT+
Sbjct: 258 ADLRSLQELLGHASLSSTQIYTR 280


>gi|17986324|ref|NP_538958.1| site-specific tyrosine recombinase XerD [Brucella melitensis bv. 1
           str. 16M]
 gi|260562936|ref|ZP_05833422.1| tyrosine recombinase xerD [Brucella melitensis bv. 1 str. 16M]
 gi|265992055|ref|ZP_06104612.1| tyrosine recombinase xerD [Brucella melitensis bv. 1 str. Rev.1]
 gi|265993791|ref|ZP_06106348.1| tyrosine recombinase xerD [Brucella melitensis bv. 3 str. Ether]
 gi|265999264|ref|ZP_06111622.1| tyrosine recombinase xerD [Brucella melitensis bv. 2 str. 63/9]
 gi|34222943|sp|Q8YJP2|XERD_BRUME RecName: Full=Tyrosine recombinase xerD
 gi|17981909|gb|AAL51222.1| integrase/recombinase xerd [Brucella melitensis bv. 1 str. 16M]
 gi|260152952|gb|EEW88044.1| tyrosine recombinase xerD [Brucella melitensis bv. 1 str. 16M]
 gi|262764772|gb|EEZ10693.1| tyrosine recombinase xerD [Brucella melitensis bv. 3 str. Ether]
 gi|263003121|gb|EEZ15414.1| tyrosine recombinase xerD [Brucella melitensis bv. 1 str. Rev.1]
 gi|263092931|gb|EEZ17106.1| tyrosine recombinase xerD [Brucella melitensis bv. 2 str. 63/9]
          Length = 309

 Score = 89.7 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 43/272 (15%), Positives = 92/272 (33%), Gaps = 32/272 (11%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHT---PSSAIQFLTS 139
              A N+  S+    +    +      +  +  T HIR  +++       P+S  + L++
Sbjct: 20  RGAAQNTLESYRRDLEAAAEELAAKGVNLAEAETGHIRMTLDTMAAQGFAPTSQARRLSA 79

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS------------ 187
           +R  F++   + +   +P   +  PK++    +  + E++ +     +            
Sbjct: 80  LRQFFRFLYSEGFRQDDPTGILYAPKKQKPLPKIMSVENVGKLLDRAALEANEAAEPGER 139

Query: 188 -EGSQPRLAFEFLLYSGLRCSDSCRAGVQ-HLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
            +  +     E L  +GLR S+     V     ++ F +   K      V L       L
Sbjct: 140 IKALRLHALLETLYATGLRVSELVGLPVTVARTDHRFLLVRGKGSKDRMVPLSRKARDAL 199

Query: 246 AM-------TPIGKETFFIN---NDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKF 292
                     P   +  ++    ++   +    F+   K  A +AG+     S H +R  
Sbjct: 200 QKFLTLRDSLPGSDDNPWLFPAFSESGHLARQVFARELKGLAARAGLAASSVSPHVLRHA 259

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324
            A+     GA    +    G   +   + YT 
Sbjct: 260 FASHLLQNGADLRTVQQLLGHADISTTQIYTH 291


>gi|295837904|ref|ZP_06824837.1| integrase [Streptomyces sp. SPB74]
 gi|295826727|gb|EFG65002.1| integrase [Streptomyces sp. SPB74]
          Length = 414

 Score = 89.7 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 54/369 (14%), Positives = 106/369 (28%), Gaps = 59/369 (15%)

Query: 18  HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISE 77
           HG++    R       R         + A +  L             R  P T+   ++ 
Sbjct: 26  HGRVTVGVRDDGRPDRRHVERKTRAEVTAAVRELEKQRDANTLRKPGR--PWTVAMWLTH 83

Query: 78  YRKSAHWGSLAVNSRISFE-SYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI-- 134
           + +S    ++  N+ + +  +    +I   G     K+  +HI       +     A   
Sbjct: 84  WIESIAPLAVNENTMVGYGVAVRKHLIPALGAHRLDKLGPEHIERFYGKMRANGRKAGTI 143

Query: 135 -QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
            Q   + R     AVR+ ++A NP    + P+   E I P+T  ++++  +   +  +  
Sbjct: 144 HQIHRTFRTALNEAVRRGHLARNPVQLAKAPRLNEEEIEPYTVAEVRRLLAAADKR-RNS 202

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI----------------------------- 224
             +   L  GLR  ++       +      +                             
Sbjct: 203 ARWAVALALGLRQGEALGLKWDDIDTARGVLYVRRSRRRPRYAHGCGDTCGRKAGYCPER 262

Query: 225 ------------KTQKTGTIITVELPDGFMKLLAMTPIGKET----------FFINNDKQ 262
                       +  +    +  +L D   +        +             F     +
Sbjct: 263 RRTNPETADTKSRAGRRAVGLPAQLGDLLKEHREKQLTERAAAGMDWSEEGWVFATPTGR 322

Query: 263 KMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
                     +K     AGV +   H  R  +AT+    G +   +M   GW T   A  
Sbjct: 323 GTPPRTDYDEWKELLRTAGVRDGRLHDARHTAATVLLILGVSERAVMGLMGWSTTAMAAR 382

Query: 322 YTKGADRIR 330
           Y    D +R
Sbjct: 383 YQHMVDTVR 391


>gi|255994002|ref|ZP_05427137.1| site-specific recombinase, phage integrase family [Eubacterium
           saphenum ATCC 49989]
 gi|255993670|gb|EEU03759.1| site-specific recombinase, phage integrase family [Eubacterium
           saphenum ATCC 49989]
          Length = 324

 Score = 89.7 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 44/275 (16%), Positives = 90/275 (32%), Gaps = 24/275 (8%)

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
           R    TL  +   +     +  ++  +  +  + +     +         T   ++    
Sbjct: 29  RSSEPTLGTVFRAWLDLKRF-EISEGTVKNILARWRNNYARYATRPVASFTAPELQQITL 87

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS--VERPKRKTEGIRPWTKEDMQQF 182
           +            + +R +FK A R  +++ +P  +  V +P+R+      +TKE++ +F
Sbjct: 88  TLAKRYVDIKHPFSVLRNIFKHAKRLGFISTDPTANLMVPKPRRRAPTNNYYTKEELDKF 147

Query: 183 KSFWSE--GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--------------T 226
                E    Q  + F  L ++GLR  ++       L  +   ++              T
Sbjct: 148 LRLAKEQLPHQWYVFFYLLAHTGLRRGEALALKWIDLSRDSLLVRRTLSATLTGHAISDT 207

Query: 227 QKTG-TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284
            KT  +   V +      LL       E  F N     + ++Q   W        G+   
Sbjct: 208 AKTSASHRRVYIDSDVYNLLISLFSSSEFIFSNTKGGCITSSQPIRWLHKIK---GIRYI 264

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
           S HG R    ++   AG     +    G   +   
Sbjct: 265 SPHGFRHTHCSLLFSAGVDIPTVQKRLGHSDLKTT 299


>gi|253315027|ref|ZP_04838240.1| integrase [Staphylococcus aureus subsp. aureus str. CF-Marseille]
          Length = 341

 Score = 89.7 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 50/325 (15%), Positives = 110/325 (33%), Gaps = 26/325 (8%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT--TLKWLIS 76
           GK   Y  K  G+R R               A +    K   + S        TL+    
Sbjct: 8   GKKWQYEFKHEGKRYRKKGFRTK------REANSAGLDKLNELRSGFNIDNYITLEEYFE 61

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRSGVE--SRKHTPSSA 133
            + K+     +  N+   + +    I + K G  +  KI  +  +  +   S++H   + 
Sbjct: 62  NWIKTYKQPVVKENTYRHYRNALQHIQKHKIGKMELSKINRQVYQKFINDHSKEHAKETI 121

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSV-----ERPKRKTEGIRPWTKEDMQQFKSFWSE 188
            +   ++R     A+    +  NP   V     +  K + E     T+ ++ +      +
Sbjct: 122 RKTNGAIRSALDDALYDGLIFKNPAYKVNYKAGKPTKSEQEKFISVTEYEILK-DHVRKK 180

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTG-TIITVELPDG----F 241
            ++  LA   ++ +G R S +    ++H+    N   I  +KT  +   + +        
Sbjct: 181 RTRSSLALFIMICTGCRVSGARNIKIEHINQVKNTIFIDERKTDTSPRYISIAKSDMKHI 240

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADA 300
           M +++   I  + +        +N    +   K+      +   ++H +R    +     
Sbjct: 241 MDVISTFAISYDGYIFKEAGSIINLQAINNALKSACRVNNIPIITSHALRHTHCSYLLAK 300

Query: 301 GATAHELMATYGWKTVD-QAETYTK 324
           G + H +    G K +      Y+ 
Sbjct: 301 GVSIHYISKRLGHKNIAITTSVYSH 325


>gi|302870559|ref|YP_003839196.1| integrase family protein [Micromonospora aurantiaca ATCC 27029]
 gi|302573418|gb|ADL49620.1| integrase family protein [Micromonospora aurantiaca ATCC 27029]
          Length = 491

 Score = 89.7 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 61/376 (16%), Positives = 117/376 (31%), Gaps = 86/376 (22%)

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYR 112
           +   R     P   PTT    ++ + +      LA  +   +  +    ++   G    +
Sbjct: 117 AVAARIRAGVPASVPTTTGEYLTAWLE--GRRGLAEKTVRGYSDHIRLYLVPHLGKIPIQ 174

Query: 113 KITTKHIRSG-----------VESRKHT---------------PSSAIQFLTSMRVLFKW 146
            + T HI +              +R  T                SS  +   ++R     
Sbjct: 175 SLRTAHIEAMFTAIGRQQDAIRAARASTDPDVRARVKGVRPMEASSIQRLYATLRKALND 234

Query: 147 AV-RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA---------- 195
           AV R + +  NP L VE P  K    R WT + ++ + +     S   +           
Sbjct: 235 AVVRAKLIPTNPALGVELPTAKRPKARVWTVKAVEHWHATGKRPSPVMVWMPAQAGRFLD 294

Query: 196 ------------FEFLLYSGLRCSDSCRAGVQHLQNNIFSI---------------KTQK 228
                       F  +L+ GLR  ++C      +  +   +               +  K
Sbjct: 295 YTERHDIVLYAMFLLILHRGLRRGEACGLRDHDVDLDAGYLTVVEQITTVGYTPITRPVK 354

Query: 229 TGT--------IITVELPDGFMKLLAMTP-------IGKETFFINNDKQKMNATQFSIWF 273
           +            T+ +   ++ +                 FF+  D +  +    S  F
Sbjct: 355 SDAGDRMVPLGPKTIAVLRTYLDMRRRWKSVSGDDWPDTGLFFVRPDGKPWHPQTISDRF 414

Query: 274 KAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADRIRL 331
                KA +     H +R  +AT     GA   E+  T G  T+   ++TYT     + L
Sbjct: 415 DHLVAKAKLPPVRLHDLRHCAATYLRHGGADMKEVQETLGHSTIGLTSDTYTSVI--LEL 472

Query: 332 GIKNSRRISSVVDSDD 347
              ++  ++ ++  DD
Sbjct: 473 ERGSADAVADLIPRDD 488


>gi|170293805|gb|ACB12942.1| putative site specific tyrosine recombinase [Thauera sp. E7]
          Length = 282

 Score = 89.7 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 36/253 (14%), Positives = 79/253 (31%), Gaps = 13/253 (5%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLF 144
             LA  ++ ++ S   Q+          ++   H+++ +  R      A   +       
Sbjct: 15  RGLARRTQQAYLSVVAQLAAHY-HCSPDRLDGAHVKAWLLHRITERHLAYTTVNQAVCAL 73

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGL 204
           K+            +++             ++E++ +     +   + R        +GL
Sbjct: 74  KFFFDIVLGRTAEAITIPYAHTPQRQPEILSREELARLFE-AAANLRARTLLMTAYAAGL 132

Query: 205 RCSDSCRAGVQHLQ----NNIFSIKTQKTGTIITVELPDGFMKLLAM-TPIGKETFFI-- 257
           R S+ C   V  +          +   K G      L    ++ L +   I K   ++  
Sbjct: 133 RVSEVCALRVADIDSAPDRMCIRVVAGKGGKDRYTLLSPSLLEALRVYWRICKPRVWLFP 192

Query: 258 --NNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGW 313
              +  Q  + +     +     +AG+ K+   H +R   AT   +AG     L    G 
Sbjct: 193 RATDAAQPYDISSAQRAYYRARDRAGITKTGGIHTLRHAFATHLLEAGVDLATLAKLLGH 252

Query: 314 KTVDQAETYTKGA 326
             +   + Y   A
Sbjct: 253 GHLSTTQRYLHLA 265


>gi|46581232|ref|YP_012040.1| phage integrase family site specific recombinase [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|46450653|gb|AAS97300.1| site-specific recombinase, phage integrase family [Desulfovibrio
           vulgaris str. Hildenborough]
          Length = 394

 Score = 89.7 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 55/326 (16%), Positives = 94/326 (28%), Gaps = 58/326 (17%)

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHI------ 119
           K  T   L   Y   A W      S    +   +  ++ +        IT +H+      
Sbjct: 67  KDITFGELAERY---AAWAKSTRISGHKMQRLLELHVLPRLHSMPAASITPQHLNELRSE 123

Query: 120 ---------RSGVESRKHTPSSAIQFLTSMRVLFKWAV---------RQEYVAINPC--- 158
                    R   E R  +  + +  L ++R ++ +A          R  Y   NP    
Sbjct: 124 LEQTTPLRGRGKAEGRGLSAQTVLHCLKAVREVYNYARETPHPDFPERMLYSGKNPAVLS 183

Query: 159 ---LSVERPKRKTEGIRPWTKEDMQQFKSFWSEG----SQPRLAFEFLLYSGLRCSDSCR 211
                V  P+     +R     ++    S+  +     S+        L +G+R  +  R
Sbjct: 184 RRGHGVRLPRSDARRLRILNDAEISALLSYRGQNVVETSELHDMILISLDTGMRAGELVR 243

Query: 212 AGVQHLQNNIFSIKT--------QKTGTIITVELPDGFMK---LLAMTPIGKETFFINND 260
              + +  +  +I+          K G    V     F +   +L          F    
Sbjct: 244 LRTEDIDVDHGTIRIYSGSDAGITKGGRTRIVHAGHLFAESITMLRRRVGSPGLLFPGRG 303

Query: 261 KQKMNATQFSIWFKAKATKAGVNKS---------AHGVRKFSATISADAGATAHELMATY 311
               N T  S          G+N            H +R   AT   +AG   + L    
Sbjct: 304 GAVRNTTAVSRAMAHICATLGLNADVTDDRNRIVWHTLRHTYATRMLEAGIDIYTLKELL 363

Query: 312 GWKTVDQAETYTKGADRIRLGIKNSR 337
           G  +V   E Y    DR +     +R
Sbjct: 364 GHSSVAVTERYLHLCDRAKRNAALAR 389


>gi|296100795|ref|YP_003610941.1| shufflon-specific DNA recombinase [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295055254|gb|ADF59992.1| shufflon-specific DNA recombinase [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 386

 Score = 89.7 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 42/246 (17%), Positives = 88/246 (35%), Gaps = 17/246 (6%)

Query: 109 FDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWA-VRQEYVAINPCLSVERPKRK 167
            DYR +   +  S    R  +P++    L  +  L+  A +     + NP   V +P   
Sbjct: 59  ADYRDMRL-NTVSDRTGRTVSPNTVRLELALLSALYNLARIEWGTCSHNPVEHVRKPAAS 117

Query: 168 TEGIRPWT-KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSI 224
               R  T  E+ +  ++   +  Q    F   L + +R  +      +++     I  +
Sbjct: 118 PGRTRRLTSTEERRIARALRQKNPQLLAIFHLALETAMRQGEILSLRWEYVDLHLGIAHL 177

Query: 225 KTQKTGTIITVELPDGFMKLLA--MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
              K GT   V L     ++L     P+    F          +  F   ++    +  +
Sbjct: 178 PLTKNGTARDVPLSWKARQVLKEFAGPVTGPVF-------DYTSNGFKSAWRVLLAELEI 230

Query: 283 -NKSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSRRI 339
            +   H +R  + +   + G     E+ A  G K+++  + YT   A ++   +   RR 
Sbjct: 231 HDLHFHDLRHEAVSRLFELGTLNVMEVAAISGHKSMNMLKRYTHLRASQLVSKLDARRRQ 290

Query: 340 SSVVDS 345
           +  + +
Sbjct: 291 AQKLAT 296


>gi|315651157|ref|ZP_07904189.1| phage integrase family site-specific recombinase [Eubacterium
           saburreum DSM 3986]
 gi|315486622|gb|EFU76972.1| phage integrase family site-specific recombinase [Eubacterium
           saburreum DSM 3986]
          Length = 351

 Score = 89.7 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 41/288 (14%), Positives = 92/288 (31%), Gaps = 36/288 (12%)

Query: 89  VNSRISFESYFDQIIRKSGDFDYRKITT----KHIRSGVESR-KHTPSSAIQFLTSMRVL 143
            + + ++    D  +    +     I         R     +  +  ++  + +++++ +
Sbjct: 64  PSIKNTYSKITDIPLSVLENLSVTDIEEFMEYLKYRESEGKKISNKENAIKRKVSTLKSV 123

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS------------- 190
           FK+  R E +  N    V+ PK  ++ I     +++        +G              
Sbjct: 124 FKYFYRVEKINENIMERVQLPKLHSKEIIRLDIDEVAMMIDEAEKGEGLSDRQKAYHEKT 183

Query: 191 --QPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLA 246
             +       LL +G+R S+     +  +   NN   I  +K G  +TV   D   + L 
Sbjct: 184 KVRDVALLSLLLGTGIRVSECVGLDISDVDFKNNGILIH-RKGGKEVTVYFSDEVSEALQ 242

Query: 247 MTPIGK----------ETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294
                +            FF++   ++M+        K  A         + H +R    
Sbjct: 243 NYLDERVLILEESGHEGAFFLSMQNKRMSVRSVENLVKKYARIISPLKKITPHKLRSTYG 302

Query: 295 TISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISS 341
           T         + +    G   V+   + Y    D  R   +N+ ++  
Sbjct: 303 TNLYKETGDIYLVADVLGHSDVNTTKKHYAAIEDDRRKSARNAVKLRE 350


>gi|254470878|ref|ZP_05084281.1| tyrosine site-specific integrase/recombinase protein [Pseudovibrio
           sp. JE062]
 gi|211960020|gb|EEA95217.1| tyrosine site-specific integrase/recombinase protein [Pseudovibrio
           sp. JE062]
          Length = 319

 Score = 89.7 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 36/269 (13%), Positives = 76/269 (28%), Gaps = 29/269 (10%)

Query: 85  GSLAVNSRISFESYFDQII--------RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF 136
             LA  +  ++E    Q +                  +  K  R  + +R+   +     
Sbjct: 34  RRLAERTLEAYERDTRQFLRFMTSYEGEPVALRHLESLKPKDFRGFLATRRKDGAQTRTL 93

Query: 137 ---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-------FKSFW 186
              L  +R    +   +  V      +V  P+      +P   E+ +        F+   
Sbjct: 94  ARGLAGIRSFLSFLEERGEVNAAGAAAVRTPRLPRSLPKPIPVEEAKAIVSSDLAFEDTP 153

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL---QNNIFSIKTQKTGTIITVELPDGFMK 243
              ++    F  L   GLR S++            +    ++ +     +   LP     
Sbjct: 154 WVEARNAAVFTLLYGCGLRISEALSLTPATAPKEGDKSLKVRGKGNKERLVPVLPVVVEA 213

Query: 244 LLAMTP------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSAT 295
           + A               F       +NA    +  +   +  G+    + H +R   AT
Sbjct: 214 IEAYKDQCPYDLSANSPLFRGVRGGALNARMIQLAMQKIRSALGLPDTATPHALRHSFAT 273

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTK 324
                G     +    G  ++   + YT+
Sbjct: 274 HLLSEGGDLRSIQELLGHASLSTTQIYTE 302


>gi|146300455|ref|YP_001195046.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
 gi|146154873|gb|ABQ05727.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
          Length = 386

 Score = 89.7 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 42/240 (17%), Positives = 93/240 (38%), Gaps = 16/240 (6%)

Query: 110 DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
           DY++   K       S     ++A+ +   ++   K A +++ +  +    ++  K +  
Sbjct: 152 DYKEYLLKAKNRKNNSSTIARNTALSYHNKLKTTLKNAYKEQKLRTDINAGIDSIKEQES 211

Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-----QNNIFSI 224
                T ++ ++  S            +F + +GLR SD  +   + +            
Sbjct: 212 QRNFLTLKEAKKLFSTPCPKRIVHQISKFSVLTGLRYSDIAKLTWEEIMFIEDDGYYIRF 271

Query: 225 KTQKTGTIITVELPDGFMKLLA--MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
           K +KT  + T+ + +   ++LA    P+     F +   +K +  +          +AG+
Sbjct: 272 KQKKTEGLQTIPISNEAYEILAEKAQPVKTGKVFFDL--KKWDVDR---ALPVWIARAGI 326

Query: 283 NK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
            K  + H  R   AT+   +G     +    G K++   + YTK  D  +   + S+RI+
Sbjct: 327 VKHITFHCFRHTYATLQIASGTDIFTVSKMMGHKSIKTTQIYTKIIDEKKR--EASQRIT 384


>gi|293375666|ref|ZP_06621939.1| phage integrase, N-terminal SAM domain protein [Turicibacter
           sanguinis PC909]
 gi|325842952|ref|ZP_08167804.1| phage integrase, N-terminal SAM-like domain protein [Turicibacter
           sp. HGF1]
 gi|292645717|gb|EFF63754.1| phage integrase, N-terminal SAM domain protein [Turicibacter
           sanguinis PC909]
 gi|325489478|gb|EGC91846.1| phage integrase, N-terminal SAM-like domain protein [Turicibacter
           sp. HGF1]
          Length = 326

 Score = 89.7 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 41/293 (13%), Positives = 107/293 (36%), Gaps = 46/293 (15%)

Query: 83  HWGSLAVN----SRISFESYFDQII--RKSGDFDYRKI------TTKHIRSGVESRKHTP 130
           H+ +L  +    + IS+E                  +I        +H    ++ +    
Sbjct: 22  HFLNLKASSSHYTAISYERDILDFFQVDYIEQIQLEQIIAVNMFDVEHYLLDLKGKGCAS 81

Query: 131 SSAIQFLTSMRVLFKWAVRQE-------YVAINPCLSVE--RPKRKTEGIRPWTKEDMQQ 181
           ++  + ++S+  L+KW ++ +        +  NP  +++  +PK   +     T+++ Q+
Sbjct: 82  ATINRKVSSLSSLYKWLLKYQDNRTGKSLLYFNPFGNLKDEKPKVNNKETEFLTQDECQR 141

Query: 182 ----FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN----NIFSIKTQKTGTII 233
               F +      + +      L + LR S+     ++ +      ++  +  +     +
Sbjct: 142 LISIFDTRKIVELRNKTIIVLALTTALRKSEMINIKLKDITTYGEYDVIHVMRKGNKKDM 201

Query: 234 TVELPDGFMKLL---------AMTPIGKETFFINNDKQKMN-----ATQFSIWFKAKATK 279
            V++     +L+          M    +   FI + + K N      +  +   K+   K
Sbjct: 202 -VKIQSSLKRLIEEYIERTNRDMIQDAESYLFIGHSRNKRNNEKLDPSSLNYMLKSTCKK 260

Query: 280 AGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
           AG++K    H  R  + T++   GA+  ++      + +     Y    D+++
Sbjct: 261 AGIDKHLKVHSTRHTAITLAITGGASIEKVRDFAAHQNIATTNRYVHSIDKLK 313


>gi|225853465|ref|YP_002733698.1| site-specific tyrosine recombinase XerD [Brucella melitensis ATCC
           23457]
 gi|256045632|ref|ZP_05448510.1| site-specific tyrosine recombinase XerD [Brucella melitensis bv. 1
           str. Rev.1]
 gi|256112356|ref|ZP_05453277.1| site-specific tyrosine recombinase XerD [Brucella melitensis bv. 3
           str. Ether]
 gi|225641830|gb|ACO01744.1| tyrosine recombinase XerD [Brucella melitensis ATCC 23457]
 gi|326410027|gb|ADZ67092.1| site-specific tyrosine recombinase XerD [Brucella melitensis M28]
 gi|326539743|gb|ADZ87958.1| tyrosine recombinase XerD [Brucella melitensis M5-90]
          Length = 307

 Score = 89.7 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 43/272 (15%), Positives = 92/272 (33%), Gaps = 32/272 (11%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHT---PSSAIQFLTS 139
              A N+  S+    +    +      +  +  T HIR  +++       P+S  + L++
Sbjct: 18  RGAAQNTLESYRRDLEAAAEELAAKGVNLAEAETGHIRMTLDTMAAQGFAPTSQARRLSA 77

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS------------ 187
           +R  F++   + +   +P   +  PK++    +  + E++ +     +            
Sbjct: 78  LRQFFRFLYSEGFRQDDPTGILYAPKKQKPLPKIMSVENVGKLLDRAALEANEAAEPGER 137

Query: 188 -EGSQPRLAFEFLLYSGLRCSDSCRAGVQ-HLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
            +  +     E L  +GLR S+     V     ++ F +   K      V L       L
Sbjct: 138 IKALRLHALLETLYATGLRVSELVGLPVTVARTDHRFLLVRGKGSKDRMVPLSRKARDAL 197

Query: 246 AM-------TPIGKETFFIN---NDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKF 292
                     P   +  ++    ++   +    F+   K  A +AG+     S H +R  
Sbjct: 198 QKFLTLRDSLPGSDDNPWLFPAFSESGHLARQVFARELKGLAARAGLAASSVSPHVLRHA 257

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324
            A+     GA    +    G   +   + YT 
Sbjct: 258 FASHLLQNGADLRTVQQLLGHADISTTQIYTH 289


>gi|313889180|ref|ZP_07822834.1| site-specific recombinase, phage integrase family [Peptoniphilus
           harei ACS-146-V-Sch2b]
 gi|312844734|gb|EFR32141.1| site-specific recombinase, phage integrase family [Peptoniphilus
           harei ACS-146-V-Sch2b]
          Length = 299

 Score = 89.7 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 44/266 (16%), Positives = 94/266 (35%), Gaps = 22/266 (8%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSG------DFDYRKITTKHIRSGVESRKHTPS 131
           + K      ++ +S   + S+F  +  K G      D +   +        +   K+  S
Sbjct: 17  FLKVKEIEQISPDSIKGYVSFFSTVENKIGGRLNYDDENELSLQVLDYFQKISYFKN--S 74

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCL--SVERPKRKTEGIRPWTKEDMQQFKSFWS-- 187
           S        R  F + V+ + +  NP +   ++  K +    RP   ED+++        
Sbjct: 75  SYNTAYKRARAYFNYLVKIDKLENNPLILMGIKERKEEFN-PRPCDTEDLKKLLDVIDTD 133

Query: 188 --EGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQ--KTGTIITVELPDGF 241
              G +   A   ++ +G+R +++ R     +  + NI +I+ +  KT     + +    
Sbjct: 134 TYAGLRDYTAILLIVDTGIRPAEAFRLIDTDVIFEKNIINIRKEVAKTSQARVLPVSVKV 193

Query: 242 MKLLAMTP--IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISAD 299
           M  +         E  F   +  + +  +F    K     A V+ + + +R +  T  A 
Sbjct: 194 MIYVRALLKYNKSEYVFATINGDQFSTDRFRTRLKKYCWYADVHITPYQLRHYFGTEYAR 253

Query: 300 A-GATAHELMATYGWKTVDQAETYTK 324
           +       L    G   ++    Y K
Sbjct: 254 SDNCNILYLQKILGHSKLEMTRRYVK 279


>gi|303236450|ref|ZP_07323037.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
 gi|302483301|gb|EFL46309.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
          Length = 404

 Score = 89.7 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 65/198 (32%), Gaps = 17/198 (8%)

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-----SEGSQPRL 194
           ++ + + A R+    I     V+  K   +  +   +   ++ K+        E    R 
Sbjct: 187 LKTVCRQAYREGVADILLFDKVKISKGNKKLPKALDRGAFEKLKTLHFEELEEEMETARD 246

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVELPDGFMKLLAMTP 249
            F F  Y+G    D       HL  +           QKTG    V+L    ++L+    
Sbjct: 247 IFLFACYTGAAYCDLMELDKSHLVRDDEGSLWLKFNRQKTGVPCRVKLLPEAIRLMEKLH 306

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS-ADAGATAHE 306
             +    +      M    +  + KA   +AG+    + H  R   AT+   + G     
Sbjct: 307 SDERETLL----PFMGYATYQSYLKALRLRAGISFPFTTHTARHTFATLITLEQGVPIET 362

Query: 307 LMATYGWKTVDQAETYTK 324
           +    G   V   E Y K
Sbjct: 363 VSKMLGHSNVSMTECYAK 380


>gi|300783889|ref|YP_003764180.1| integrase/recombinase XerC [Amycolatopsis mediterranei U32]
 gi|299793403|gb|ADJ43778.1| integrase/recombinase XerC [Amycolatopsis mediterranei U32]
          Length = 326

 Score = 89.7 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 42/312 (13%), Positives = 97/312 (31%), Gaps = 32/312 (10%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIR--KSG 107
            +G   + +        P  ++ +++ Y +       L+ ++  ++      ++     G
Sbjct: 5   RSGRARRPDLRALRAALPEPVRAVVTAYERHLGLERGLSAHTVRAYVGDAVSLLGFVVDG 64

Query: 108 DFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP 164
             +  ++    +R+ + ++     + ++  +   S R    WA R   +A +P   +  P
Sbjct: 65  GSEVAELDLARLRAWLAAQQSGGASRTTLARRAASARTFTAWAHRTGVLATDPGGRLAAP 124

Query: 165 KRKTEGIRPW--------TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216
           +                  +              + R   E L  +G+R S+ C   V  
Sbjct: 125 RAHRTLPGVLRAGQAGEVMQASAAGAAQRDPVALRDRAIVELLYATGIRVSELCGLDVGE 184

Query: 217 LQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKE--------------TFFINNDK 261
              +   +    K G    V       + LA                       F+    
Sbjct: 185 ADFSRRVVTVLGKGGKERVVPFGVPAAEALADWIDEGRPKIITESGGESAEAALFLGVRG 244

Query: 262 QKMNATQFSIWFKAK--ATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
           ++++             A    ++   HG+R  +AT   + GA    +    G  T+   
Sbjct: 245 KRVDPRAVRRVVHDAVTAVPGALDMGPHGLRHSAATHLLEGGADLRSVQELLGHATLATT 304

Query: 320 ETYTK-GADRIR 330
           + YT    DR++
Sbjct: 305 QLYTHVTVDRLK 316


>gi|260655773|ref|ZP_05861242.1| tyrosine recombinase XerD [Jonquetella anthropi E3_33 E1]
 gi|260629389|gb|EEX47583.1| tyrosine recombinase XerD [Jonquetella anthropi E3_33 E1]
          Length = 308

 Score = 89.7 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 42/260 (16%), Positives = 83/260 (31%), Gaps = 23/260 (8%)

Query: 88  AVNSRISFESYF---DQIIRKSGDFD--YRKITTKHIRSGVESRKHTPSSAIQFLTSMRV 142
           + ++  S+             SG         TT    + +  +    S+  Q + ++R 
Sbjct: 23  SDHTVRSYARALAKWRSWCETSGADPMSPDDATTPRFIAAMREQDLASSTVQQTMAALRS 82

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEF 198
             ++       A +       P +     +  +  ++ +     S  S    + R   + 
Sbjct: 83  WVRYRQSTGSAAASALRLPALPDKPRRLPQVLSDGEIDRLLESCSGESWMDVRDRTILQI 142

Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-ITVE----LPDGFMKLLAMTPIGKE 253
           L   GLR S+ C   +  +  +   +  +  G    +V     + D   K LA+   G  
Sbjct: 143 LADCGLRASEICSLTLASVDMDTRFLHVRGKGNKDRSVPFGASVADWLTKWLAVRADGHP 202

Query: 254 T------FFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGATA 304
           T       F +    ++         + +  +AGV K+    H +R   AT     G   
Sbjct: 203 TGGARSFLFASRTGDRLTRIDLWRLIRRRGERAGVAKARLHPHVLRHSVATRLLRRGMDL 262

Query: 305 HELMATYGWKTVDQAETYTK 324
             L    G  ++   E YT 
Sbjct: 263 RTLQEFLGHSSIGTTEKYTH 282


>gi|239833042|ref|ZP_04681371.1| tyrosine recombinase XerC [Ochrobactrum intermedium LMG 3301]
 gi|239825309|gb|EEQ96877.1| tyrosine recombinase XerC [Ochrobactrum intermedium LMG 3301]
          Length = 315

 Score = 89.7 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 48/291 (16%), Positives = 96/291 (32%), Gaps = 31/291 (10%)

Query: 71  LKWLISEYRKS-AHWGSLAVNSRISFES----YFDQIIRKSGD----FDYRKITTKHIRS 121
           L     E+ K+      L+ N+  ++E     + + +    G+     D   +    +RS
Sbjct: 15  LAAAREEWLKTLKDARRLSENTLDAYERDTRQFLNFLTGHLGEPPSLKDVGNLRIADLRS 74

Query: 122 GVESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
            + SR++      +  + L  +R L +   ++         ++  P++     +P T ED
Sbjct: 75  FLASRRNEGVGARTLGRGLAGVRSLLRHLEKRGLANAAGASAMRAPRQPKSLPKPLTAED 134

Query: 179 MQQFKSFWS-------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIK-TQKT 229
            ++  +            ++       L   GLR S++       L ++   SI  T K 
Sbjct: 135 ARRVVAADGQLAEEPWIAARNAAVLTLLYGCGLRISEALGLTGDALSDSTALSITITGKG 194

Query: 230 GTIITVELPDGFMKLLAMTPI-------GKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
                V L     + +A             +  F       ++A       +      G+
Sbjct: 195 NKARLVPLLPVVHRAVAQYRTLCPFDLSADKPLFRGAKGGILHAAIIQREMQKLRAGLGL 254

Query: 283 N--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
               + H +R   AT     G     +    G  ++   + YT G D  RL
Sbjct: 255 PDSATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQVYT-GVDTERL 304


>gi|124515604|gb|EAY57114.1| putative phage integrase [Leptospirillum rubarum]
          Length = 358

 Score = 89.7 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 49/323 (15%), Positives = 99/323 (30%), Gaps = 30/323 (9%)

Query: 27  KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGS 86
           +  G   +    +      A+         +  +I+    + TTL   +  Y  S    S
Sbjct: 17  RRKGFETQARVFNTKAEAEAWAQVTESEMVRGVFISRKAAENTTLDEALDRY--SQEVSS 74

Query: 87  LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS--MRVLF 144
               +        +    K        I  K I    + R  + S A   L    +  LF
Sbjct: 75  KKKGAYQESRRIENLKRHKLAKRYLASIQGKDIAEYRDERLKSVSQASVRLELALLSHLF 134

Query: 145 KWAVR----QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE--GSQPRLAFEF 198
             A+R       +  NP   +  PK+     R   + + ++  +   E  G  P +    
Sbjct: 135 NTAIREWGMNGIL--NPVTQIRLPKKAMSRDRRLFQGEEEKLLASCDEYGGDLPYVVR-L 191

Query: 199 LLYSGLRCSDSCRAGVQHLQNN--IFSIKTQKTGTIITVELPDGFMKLLAMTPIG-KETF 255
            L +G+R  +       ++       ++   K G    V L    +++L   P       
Sbjct: 192 ALATGMRRGELASLTWDNVDLKKRTATLPETKNGEKRIVPLSQEAVRILRDLPRRFDGMV 251

Query: 256 FINNDKQK------MNATQFSIWFKAKATKAGV--------NKSAHGVRKFSATISADAG 301
           F   D          + ++    ++ +  + G+        + + H +R  + +   + G
Sbjct: 252 FGFVDSHSITTAFIRSVSRARSAYEKECAEKGIKPDPGFLVDLTFHDLRHEATSRFFELG 311

Query: 302 ATAHELMATYGWKTVDQAETYTK 324
                +    G KT    + YT 
Sbjct: 312 LDTPFVKKITGHKTYQMLDRYTH 334


>gi|91791684|ref|YP_561335.1| phage integrase [Shewanella denitrificans OS217]
 gi|91713686|gb|ABE53612.1| phage integrase [Shewanella denitrificans OS217]
          Length = 404

 Score = 89.7 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 54/303 (17%), Positives = 102/303 (33%), Gaps = 40/303 (13%)

Query: 59  EYINSPRKKPTTLK---WLISEYRKSAHWGSLAV--NSRISFESYFDQIIRKSGDFDYRK 113
             I   R K  ++K    L +++ +S     L      +  +    + I    G+    +
Sbjct: 81  PLIVRQRIKEQSIKVVDDLFNDWYESDLVKRLKHPHIPQRVYR---NDIKPAIGEIPIDQ 137

Query: 114 ITTKHIRSGVESRK-HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV---ERPKRKTE 169
           +  + IR+ V+      P++A   L  ++ LF+  ++ + +  NP  +    +    +  
Sbjct: 138 VNARDIRAIVQKIAQERPTTANDALMYLKQLFRHGIKLDLLGNNPASAFTVSDAGGVELS 197

Query: 170 GIRPWTKEDMQQFKSFWSEGSQ-----PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
             R  T  ++++    +   +        LA   L+  GLR S+ C A     + +    
Sbjct: 198 KDRALTFPEIEKAFKLFKANAMSFTRDNYLACAMLVTLGLRKSELCCAMWNEFELDKALW 257

Query: 225 K----TQKTGTIITVELPDGFMKLLAMTPI---GKETFFI---NNDKQKMNATQFSIWF- 273
                  KTG  IT+ LP   M+ L    I   G    F     + K  M     +    
Sbjct: 258 HLPEGRSKTGAPITIPLPRQAMEWLNELKIRSCGSAYVFPARRTSSKPHMGNDTLNRAIS 317

Query: 274 KAKATKAGVNK------------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
           K    + G               + H +R+   T++A  G   H        K       
Sbjct: 318 KLFGREPGRKVQPPNLMGDMLLFTPHDLRRTFRTLAASQGVPGHVAERCLNHKLKGVEGI 377

Query: 322 YTK 324
           Y +
Sbjct: 378 YDR 380


>gi|326797743|ref|YP_004315562.1| integrase family protein [Sphingobacterium sp. 21]
 gi|326548507|gb|ADZ76892.1| integrase family protein [Sphingobacterium sp. 21]
          Length = 413

 Score = 89.7 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 44/289 (15%), Positives = 93/289 (32%), Gaps = 36/289 (12%)

Query: 85  GSLAVNSRISFE---SYFD-QIIRKSG--DFDYRKITTKHIRSG----VESRKHTPSSAI 134
                N+   +    ++    + +  G  D + R I    I           + +  SA 
Sbjct: 126 KGFKPNTLKGYNTSVAHLTSYLEKCHGETDIEIRHIDHAFITGYEFFLRSDMECSAVSAA 185

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQ 191
           +++  +R +    +   ++  NP +  +  K K       T +++ +        +  S 
Sbjct: 186 KYMKHLRKIINQCLAHRWITENPFVFYKT-KAKPREKEFLTPDELDRIAQKEFSITRLSH 244

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQ---NNIFSI--KTQKTGTIITVELPDGFMKLLA 246
            R  F F  Y+GL  +D  +     +    +    +    +KT T   + L    ++++ 
Sbjct: 245 VRDIFVFCCYTGLSYADVRKLQKTGIAKGIDGRLWVLTSREKTETSSNIPLLPQALEIIG 304

Query: 247 MTP-----IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSAT--IS 297
                   + K         QKMN+     + K  A   G+ K  + H  R   AT    
Sbjct: 305 RYADYPPCVAKGMVLPVLSNQKMNS-----YLKEIADLCGITKKLTFHMARHTFATTVTL 359

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346
           A+       +    G   +   + Y K  D       +  ++   +   
Sbjct: 360 ANN-VPIETVSKMLGHTNIKTTQHYAKLLDTR--ISSDMEKLKEKLGFR 405


>gi|251781708|ref|YP_002996010.1| site-specific recombinase, phage integrase family [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
 gi|242390337|dbj|BAH80796.1| site-specific recombinase, phage integrase family [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
          Length = 384

 Score = 89.7 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 51/281 (18%), Positives = 96/281 (34%), Gaps = 44/281 (15%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWA 147
           A  +   F  +   I+   GD    KI+    ++ +  +     +  Q  +  R +F +A
Sbjct: 90  ASRTLDIFRLH---ILPVMGDLPISKISPLDCQNFITEKAKVFKNIKQIKSYTRKVFDFA 146

Query: 148 VRQEYVAINPCLSVERPKRKTEGIR-PWTKEDMQQFKS--FWSEGSQPRLAFEFLLYSGL 204
           ++ + +  NP   +  PKRK   I   WT +++Q+F +     E  +    F  L YSGL
Sbjct: 147 IKMKLLKHNPMTEIIMPKRKKTRIENYWTVQELQEFLAIVLQEEPYKHYALFRLLAYSGL 206

Query: 205 RCSDSCRAGVQHLQ---------------NNIFSIKTQKTGTII--------TVELPDGF 241
           R  +        +                +     K+ K    +        T+ +   +
Sbjct: 207 RKGELYALKWADIDFQSETLSVNKSLGRLDGQAIEKSTKNDFSVRKIKLDSETISILQEW 266

Query: 242 MKL-------LAMTPIG-KETFF---INNDKQ--KMNATQFSIWFKAKATKAGVNK-SAH 287
             +       LA+ P+  K+ F             ++A   +        K  + K S H
Sbjct: 267 KSINQKEKAQLAVAPLSIKQDFIFTYCTRTGSIEPLHADYINNVLSRIIRKHSLRKISPH 326

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGAD 327
           G R   AT+  + G          G  +     +TY+   +
Sbjct: 327 GFRHTHATLMIEIGVDPVNTAKRLGHASSQMTLDTYSHSTN 367


>gi|255655345|ref|ZP_05400754.1| putative tyrosine recombinase [Clostridium difficile QCD-23m63]
          Length = 303

 Score = 89.7 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 44/258 (17%), Positives = 88/258 (34%), Gaps = 21/258 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE--SRKHTPSSAIQFLTSMRV 142
             L  N++  + S            +    T +  ++ V+    K+  S+  +  + +  
Sbjct: 20  TKLNPNTKHDYLSKVILFKEFLKGKELIYATKEDCKNFVDYIQTKYAKSTCEKIYSYLHS 79

Query: 143 LFKWAVRQEYVAINPCLSVERP---KRKTEGIRPWTKEDMQQFKSFWS-EGSQPRLAFEF 198
            + +  ++ Y+ INP   VE+P   + KT+     + +++ +          + R+    
Sbjct: 80  FYNFLKKEGYIDINPFRYVEKPTVTRIKTK-DDVLSIQEINKLIGILPKLNIRDRVIIVC 138

Query: 199 LLYSGLRCSDSCRAGVQHLQ---NNIFSIKTQKTGTIITVELPDGFMKLLA--------- 246
           L+ +G   ++      + L    N+   ++  K      V+L   F KLL          
Sbjct: 139 LVTTGCLLNELVSLKWKDLMVDENDNSYVRLGKGRKERVVKLHPYFFKLLEDYRNYSGLP 198

Query: 247 -MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATA 304
            +     +  F       +      +  K     AG+   SA   R   A IS   GA  
Sbjct: 199 EVIIPSDDFIFTTQKSNSITDRNVRLIVKKALDLAGLSQYSARDFRHSFAAISLRLGADE 258

Query: 305 HELMATYGWKTVDQAETY 322
            ++    GW     A  Y
Sbjct: 259 SDVKKQLGWSDKYYAIRY 276


>gi|74317697|ref|YP_315437.1| phage integrase family site specific recombinase [Thiobacillus
           denitrificans ATCC 25259]
 gi|74057192|gb|AAZ97632.1| site-specific recombinase, phage integrase family [Thiobacillus
           denitrificans ATCC 25259]
          Length = 356

 Score = 89.7 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 83/278 (29%), Gaps = 24/278 (8%)

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119
            I       ++L WL++ Y      G  +  S         +            I+   +
Sbjct: 79  RIKKTEAASSSLGWLLNRYEAEVTSGKKSATSERYRIGKLKRYR--IAGLSIYTISADDV 136

Query: 120 RSGVESRKH----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
              +   K     +P           V    A R      NP  S+E P       R   
Sbjct: 137 AEFLGDLKADGVASPGQRKYCALLSHVFNTAAKRWRLKVSNPITSLELPAGGKARDRRLE 196

Query: 176 KEDMQQFKSFWS-----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQK 228
             +     +         G+  RL  E    + +R  +        +   N +  ++  K
Sbjct: 197 PGEADTLLAELDKENAYAGAYARLGIE----TAMRRGELLGLAWDDVDLKNRVAELRDTK 252

Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAH 287
            G    V L    +K+L   P   +   +      + A+     +     K G+ +   H
Sbjct: 253 NGEGRRVPLSRAAIKVLRALPRPHKGPVL-----PIGASALRGAWGRAKEKVGIKDLRIH 307

Query: 288 GVRKFSATISADAGA-TAHELMATYGWKTVDQAETYTK 324
            +R  + +   + G   + E+ +  G KT+   + YT 
Sbjct: 308 DLRHEATSRLFEKGVFDSMEVASITGHKTLQMLKRYTH 345


>gi|163941385|ref|YP_001646269.1| integrase family protein [Bacillus weihenstephanensis KBAB4]
 gi|163863582|gb|ABY44641.1| integrase family protein [Bacillus weihenstephanensis KBAB4]
          Length = 381

 Score = 89.7 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 56/367 (15%), Positives = 122/367 (33%), Gaps = 61/367 (16%)

Query: 17  RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK--------- 67
           R    ++ FR      +R   P+   +              +       KK         
Sbjct: 5   RKFGDVWEFR------VRFKDPYTQKYKEKSKRGFKTKKEAQLAAAEEEKKLLNGLEVEI 58

Query: 68  -PTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVES 125
            PT+LK  + ++ K     ++  N+ I  E   +  II    + + +++     +  + S
Sbjct: 59  TPTSLKHYLRDWLKLFKQDNVRKNTFILHERNIEKHIIPYFQNMNLKELKPMMYQKFINS 118

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQ----EYVAINPCLSV---ERPKRKTEGIRPWTKED 178
                 S  + +  +      A+++    + +  NPC  V    +  ++ EG++    ED
Sbjct: 119 LTDQGYS-KRTVQIIHGTMNNAMKKAVNLKKIENNPCEEVVISNKNNKEREGLKYMRSED 177

Query: 179 MQQFKSFWSEGSQPRLAF-EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-------- 229
           +  F     + +     F + LL +G+R  ++     + +     +I   KT        
Sbjct: 178 ITLFLKTSYKYNYIYYIFFKALLNTGMRKGEAAALQWKDINLKEHTITISKTLDFTAKTK 237

Query: 230 ----------GTIITVELPDGFMKLL---------------AMTPIGKETFFINNDKQKM 264
                      +  T+ +P   +  L                      +  F   D   +
Sbjct: 238 EELFGDTKTFTSKRTIMIPKSLVDELLEHKKWQNANKLVLQDAYEHELDLVFSRVDGNFL 297

Query: 265 NATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETY 322
             +     F     KA + +   H +R   A +  ++GA+   +    G K+++  A  Y
Sbjct: 298 PKSTLFNAFSRILKKANLPRLEIHSLRHTHAVLLLESGASMKYIQDRLGHKSIEITANVY 357

Query: 323 TKGADRI 329
           +  +D+I
Sbjct: 358 SHISDKI 364


>gi|325298368|ref|YP_004258285.1| integrase family protein [Bacteroides salanitronis DSM 18170]
 gi|324317921|gb|ADY35812.1| integrase family protein [Bacteroides salanitronis DSM 18170]
          Length = 404

 Score = 89.7 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 46/283 (16%), Positives = 94/283 (33%), Gaps = 37/283 (13%)

Query: 89  VNSRISFESYFDQIIR------KSGDFDYRKITTKHIRSG----VESRKHTPSSAIQFLT 138
             +   ++  + ++           D   ++I    I           K   ++  +F+ 
Sbjct: 131 PATLAKYDRCYRRLEEFMKVKYNISDISLKEIGHMFITDFENYLRTESKCNENTTAKFMQ 190

Query: 139 SMRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQQFKSF---WSEGSQPRL 194
           + +++   A    ++  +P  + + R KR   G    T  ++Q+            Q R 
Sbjct: 191 TFKMIVIIAKNNGWIYTDPFSNYKIRLKRVDRGY--LTDAELQKIMKKKFPTKRLEQVRD 248

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQ---NN--IFSIKTQKTGTIITVELPDG----FMKLL 245
            F F  Y+GL   D        ++   +          KT T + V L         K  
Sbjct: 249 VFLFSCYTGLSYVDVKELKASDIRISFDGKPWIMTHRHKTDTPVNVPLLKIPQAILQKYE 308

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA-GA 302
              P G+    ++N K        + + K  A   G+NK  + H  R   AT +  A G 
Sbjct: 309 GQLPKGQLLPVLSNQK-------LNSYLKEIADLCGINKNITFHLARHTFATTTTLAKGV 361

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345
               +    G   ++  + Y +  +      K+   ++  +D+
Sbjct: 362 PIETVSKMLGHTNIETTQIYARITNEK--IRKDMEVLAGKLDA 402


>gi|191168019|ref|ZP_03029820.1| integrase [Escherichia coli B7A]
 gi|190901957|gb|EDV61705.1| integrase [Escherichia coli B7A]
          Length = 337

 Score = 89.7 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 42/207 (20%), Positives = 78/207 (37%), Gaps = 10/207 (4%)

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYV-AINPCLSVERPKRKTEGIRPWTKEDM 179
           +   S+   PSS  + LT +  +F   +  E     +P    +R K +       T+E++
Sbjct: 111 ATRRSQGIKPSSINRDLTCISGMFTALIEAELFFGEHPIRGTKRLKEEKPDTGYLTQEEI 170

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239
               +    G   ++A    L +G R  ++ R   +++ +N  +    KT    TV + +
Sbjct: 171 ALLLAALD-GDNKKIAI-LCLSTGARWGEAARLKAENIIHNRVTFVKTKTNKPRTVPISE 228

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISAD 299
              K++A    G    F + D  +   T      KA      + ++ H +R   AT    
Sbjct: 229 AVAKMIADNKRG--FLFPDADYPRFRRT-----MKAIKPDLPMGQATHALRHSFATHFMI 281

Query: 300 AGATAHELMATYGWKTVDQAETYTKGA 326
            G +   L    G   ++Q   Y   A
Sbjct: 282 NGGSIITLQRILGHTRIEQTMVYAHFA 308


>gi|298250458|ref|ZP_06974262.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
 gi|297548462|gb|EFH82329.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
          Length = 686

 Score = 89.7 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 53/336 (15%), Positives = 98/336 (29%), Gaps = 54/336 (16%)

Query: 47  YMSALTGSTPK---REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII 103
           Y    +   P+     Y + P  KP  ++ +   Y  +         +    E    + I
Sbjct: 214 YHRGQSEIEPRVIMPLYAHRPTLKPG-MEAVAKRYIAARQLTD-RPGTIQGLELALRRFI 271

Query: 104 RKSGDFDY-----RKITTKHIRSGVE-------SRKHTPSSAIQ---FLTSMRVLFKWAV 148
               +          +T  H+            +R   P +       L+ +   F    
Sbjct: 272 GWLAETHPFVESWALVTRDHLLEYANFLDHGATTRGGKPLATNTKRGRLSKLSRFFSDTA 331

Query: 149 RQEYVAINPCLSV----ERPKRKTEGIRPWTKEDMQQF-KSFWSEGSQ-PRLAFEFLLYS 202
              +    P  S+    + PK      R   +E++++  ++         R A     +S
Sbjct: 332 TWGW-EETPGRSLLSVGDLPKLPERVPRYIPEEELERLMQAVHQLDCPYQRAALLIARWS 390

Query: 203 GLRCSDSCRAGVQHLQN-----NIFSIKTQKTGTIITVELPDGFMKLLAMT--------- 248
           G R  +  R  +  L           I   KT     + L +     +            
Sbjct: 391 GARRGEIRRLALNCLDRYPDGTARLHIPVGKTKRERLIPLHEEAASAIRELQALHRGQRG 450

Query: 249 ----PIGKETFFINNDKQKMNATQ--FSIWFKAKATKAGV-------NKSAHGVRKFSAT 295
                 G ET ++     K+ +    F    +     AG+         +AH  R    T
Sbjct: 451 LSDEHTGVETQYLFMRIGKLYSDTYLFGSALRLACETAGLVTKQGKPTVTAHRFRHTVGT 510

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
             A+ GA  H +M   G  +   +  Y + +DR  L
Sbjct: 511 QLAEKGARLHTIMKVLGHTSASMSMVYAQISDREVL 546


>gi|217388371|ref|YP_002333400.1| intergrase [Enterococcus faecalis]
 gi|260559874|ref|ZP_05832053.1| integrase [Enterococcus faecium C68]
 gi|8100684|gb|AAF72368.1|AF192329_29 integrase [Enterococcus faecalis]
 gi|3243185|gb|AAC34799.1| integrase [Enterococcus faecium]
 gi|80973251|gb|ABB53357.1| Int [Eggerthella lenta]
 gi|80973262|gb|ABB53367.1| Int [Clostridium sp. MLG245]
 gi|80973273|gb|ABB53377.1| Int [Enterococcus faecium]
 gi|216409913|dbj|BAH02348.1| int [Enterococcus faecalis]
 gi|260074098|gb|EEW62421.1| integrase [Enterococcus faecium C68]
          Length = 397

 Score = 89.7 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 49/302 (16%), Positives = 92/302 (30%), Gaps = 53/302 (17%)

Query: 85  GSLAVNSRISFESYFDQII-RKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSM 140
           G++  N+++  E     +   + G      +     +      K       +      S+
Sbjct: 96  GNVKHNTKLGRERLMRILEQDRLGSCPIDSVKLSDAKEWALRMKEKGLSYKTINNDKRSL 155

Query: 141 RVLFKWAVRQEYVAINPC--LSVERPKRKTEGIRPWTKEDMQQFKSF---WSEGSQPRLA 195
           +  F  A++ + +  NP      +     TE   P T    + F SF        +   A
Sbjct: 156 KAAFYTAIQDDCIRKNPFDFQLSDVLDDDTEPKVPLTPAQEESFLSFIQGDKVYQKHYDA 215

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQ----------------NNIFSIKTQKTGTIIT-VELP 238
              LL +GLR S+ C    + L                    + I   KT + +  + + 
Sbjct: 216 IVILLGTGLRISELCGLTDKDLDFENRVIIVSHQLLRNTGVGYYIDEPKTQSGVRKIPMN 275

Query: 239 DG----FMKLLAMTPIGKETF--------FINNDKQKMNATQFSIWFKA------KATKA 280
           +     F +++      K           F+  +   M A  +   F        K+ + 
Sbjct: 276 EEVYQAFQRVIKNRKGAKPFIIDGYANFLFLKQNGYPMTAVDYGGMFGRLVKKYNKSHEE 335

Query: 281 GVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETY-------TKGADRIRL 331
            + K+   H +R    T  A+AG     L    G   +     Y       +  A+  RL
Sbjct: 336 ALPKTTTPHAMRHTFCTRLANAGMNPKALQYIMGHSNITMTLNYYAHATFDSARAEMERL 395

Query: 332 GI 333
             
Sbjct: 396 AA 397


>gi|17546273|ref|NP_519675.1| putative integrase/recombinase protein [Ralstonia solanacearum
           GMI1000]
 gi|17428570|emb|CAD15256.1| putative integrase/recombinase protein [Ralstonia solanacearum
           GMI1000]
          Length = 354

 Score = 89.7 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 44/240 (18%), Positives = 83/240 (34%), Gaps = 18/240 (7%)

Query: 102 IIRKSGDFDYRKITTKHIRSGVESRKH--TPSSAIQFLTSMRVLFKWAVRQEY---VAIN 156
           +           +T   I+   + R     PS+  + L  +    K AV  E+   +  +
Sbjct: 105 LRYPLARIHLDNLTRSDIKEWRDQRLQDVAPSTVNRELNIINAALKVAV-HEWDVAICQS 163

Query: 157 PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGV 214
              SV RP      +R  + E+    +    E   P +    +  L + +R  +      
Sbjct: 164 VLTSVRRPSNPPGRVRRLSPEEEAALRQAGEETRNPYIVPILDLALNTAMRRGEILGLEW 223

Query: 215 QHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFF-----INND--KQKMN 265
           + +   +    +   K GT   V L    MK+LA               +N+      + 
Sbjct: 224 ERISFAHRSIQLIETKNGTPRGVPLSRHAMKVLATLKQVAAHELGYEGELNSGPVFPGLT 283

Query: 266 ATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           A  F + F     +AG+ N   H +R  + +   + G +  E+ +  G K +   + YT 
Sbjct: 284 ANAFKLAFNRMMERAGLENFRFHDLRHEATSRLFEKGLSVMEVASITGHKDIRMLQRYTH 343


>gi|270294207|ref|ZP_06200409.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270275674|gb|EFA21534.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 420

 Score = 89.7 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 41/276 (14%), Positives = 99/276 (35%), Gaps = 40/276 (14%)

Query: 86  SLAVNSRISFESYFDQIIR------KSGDFDYRKITTKHIRSGVESRKHTP----SSAIQ 135
             +  +   +++   ++        +  D  + +++   IR+     K       ++ ++
Sbjct: 137 DYSPVTINRYKNVLRKLETFVPRFYEKDDITFHELSPDFIRAFDVFLKTEAGLCRNTIVR 196

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL- 194
           ++  ++ +   A+ +E++  +P    +  + +T+     T  ++Q   +   E   PRL 
Sbjct: 197 YMKCLKKITNMAIAKEWMRKDPFYGYKMEQDETD-PVFLTNNELQAIMNR--EFDIPRLE 253

Query: 195 ----AFEFLLYSGLRCSDSCRAGVQHLQNN-----IFSI------KTQKTGTIITVELPD 239
                F F  ++GL  +D      +HL+ +               + +K+ +I  V L  
Sbjct: 254 LVKDIFLFACFTGLAFADVSTLRPEHLEQDNNGDWWIRKGRVKLERRRKSSSIANVPLLP 313

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNA---TQFSIWFKAKATKAGVNK--SAHGVRKFSA 294
             + +L      +           +      + + + K  A   G+ K  + H  R   A
Sbjct: 314 VPLAILKKY---ESHPICLKQGTCLPVVCNQKANSYLKEIADFCGIKKNLTTHAARHTFA 370

Query: 295 TI--SADAGATAHELMATYGWKTVDQAETYTKGADR 328
           T    A+      E+ A  G  +    + Y +  DR
Sbjct: 371 TTVTLANN-VPLQEVSAMLGHASTRMTQHYARVMDR 405


>gi|328910529|gb|AEB62125.1| DNA integration/recombination/inversion protein [Bacillus
           amyloliquefaciens LL3]
          Length = 403

 Score = 89.7 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 54/362 (14%), Positives = 114/362 (31%), Gaps = 64/362 (17%)

Query: 20  KIIYYF--------RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
              +YF        R G  R+I+           A    L         +         +
Sbjct: 15  GYTWYFVMENGRDPRTGKRRQIKRRGFLSKASAEAAYLELKTKLLSGIDVGKENILFQEI 74

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--- 128
           K L   Y++  H  ++ V++  + +S  + +    G    + IT    +  ++  +    
Sbjct: 75  KDLW--YKEYKH--TVKVSTLRARKSEIESLEEYFGKMKIKDITRGVYQKFLDYLREENY 130

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE--RPKRKTEGIRP-------WTKEDM 179
           + ++     T+  ++FK+A +++ ++ +P   V+  RPK   E I            E++
Sbjct: 131 SFNTISGIHTTASMIFKYARQEDIISKSPTEFVKPQRPKLTVEDIESQEEAENFLEGEEL 190

Query: 180 QQFKSFWSEG--SQPRLAFEFLLYSGLRCSDSCRAGVQHL---QNNIFSIKTQKT----- 229
            +F     +         F    ++G R  +      + L    +++ + +  KT     
Sbjct: 191 VEFLDLTEKHGLFLDFEYFCMAAFTGTRSGERLAGKWRDLTLEGDDLKTFRVTKTLYCPS 250

Query: 230 --------------GTIITVELPDGFMKLLAM--------------TPIGKETFFINNDK 261
                           +  V L D    LL                T    +  F   D 
Sbjct: 251 NKASDYELLPPKTPAAVRDVPLSDFLASLLKRLKLKQAKIAYANGRTFSDDDFIFARPDG 310

Query: 262 QKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQA 319
              N  +     +    +  +NK    H  R    +++A+A     E+    G +  D  
Sbjct: 311 HPENIKKMDTRMRRILKRMDINKHITQHTFRHTFTSLAAEADVPLEEIQKILGHQNDDIT 370

Query: 320 ET 321
           + 
Sbjct: 371 KK 372


>gi|229527749|ref|ZP_04417140.1| integron integrase IntI4 [Vibrio cholerae 12129(1)]
 gi|229334111|gb|EEN99596.1| integron integrase IntI4 [Vibrio cholerae 12129(1)]
          Length = 320

 Score = 89.7 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 44/294 (14%), Positives = 89/294 (30%), Gaps = 57/294 (19%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWA 147
           A  +  ++  +  + I          +  K +   +         A +  +       + 
Sbjct: 19  AKKTIEAYLHWITRYIHFHNKKHPSLMGDKEVEEFLTYLAVQGKVATKTQSLALNSLSFL 78

Query: 148 VRQEYVAINP-CLSV--ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGL 204
            ++  +   P  L +  +R + + +     T++++++         + +L  + L  SGL
Sbjct: 79  YKE--ILKTPLSLEIHFQRSQLERKLPVVLTRDEIRRLLEIVDP--KHQLPIKLLYGSGL 134

Query: 205 RCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLAMTPIGKETFFINN--- 259
           R  +  R  VQ +  +  +I+    K G   TV L       L       + ++  +   
Sbjct: 135 RLMECMRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHLKEQIALAKRYYDRDLHQ 194

Query: 260 -------------------------------------------DKQKMNATQFSIWFKAK 276
                                                       +  MN T      +  
Sbjct: 195 KNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVMRRHHMNETVLQKAVRRS 254

Query: 277 ATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           A +AG+ K+   H +R   AT   D GA    +    G   V   + YT   DR
Sbjct: 255 AQEAGIEKTVTCHTLRHSFATHLLDVGADIRTVQEQLGHTDVKTTQIYTHALDR 308


>gi|17158102|ref|NP_478098.1| IntIdelta1 protein [Corynebacterium glutamicum]
 gi|17059621|emb|CAD12229.1| IntIdelta1 protein [Corynebacterium glutamicum]
          Length = 387

 Score = 89.7 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 44/324 (13%), Positives = 100/324 (30%), Gaps = 63/324 (19%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129
           ++ + R+   +   ++ +  ++  +    IR  G      + +  + + +      RK +
Sbjct: 16  VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75

Query: 130 PSSAIQFLTSMRVLFK--WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            S+  Q L ++   +         ++       + RP+         T +++ +   F  
Sbjct: 76  VSTHRQALAALLFFYGKVLCTDLPWLQ-----EIGRPRPSRRLPVVLTPDEVVRILGFL- 129

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
           EG   RL  + L  +G+R S+  +  V+     +    ++  K      + LP+     L
Sbjct: 130 EGEH-RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSL 188

Query: 246 AMTPIGKETFFINN---------------------------------------------D 260
                    +++ +                                              
Sbjct: 189 REQLSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVR 248

Query: 261 KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           +  M    F   FK    +AG+ K  + H +R   AT    +G     +    G   V  
Sbjct: 249 RHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVST 308

Query: 319 AETYTK-GADRIRLGIKNSRRISS 341
                +  A R RL +   +  ++
Sbjct: 309 TALLQRLAAVRGRLSLCADQAAAA 332


>gi|330971520|gb|EGH71586.1| phage integrase, putative [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 370

 Score = 89.7 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 55/361 (15%), Positives = 102/361 (28%), Gaps = 47/361 (13%)

Query: 1   MTPSLR------LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGS 54
           M P  R      LP  +  +  R G   Y  R   G+  +           A    L   
Sbjct: 1   MVPRQRNKSNKGLPQNLYMD-DRRGTYRYR-RPTDGKWFQFGTDRIKAVDAAKQLNLAFM 58

Query: 55  TPKREYINSPRKKPTTLKWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRK 113
                          +    +  Y  +      LA  +   +  +F +  +        +
Sbjct: 59  QGADLVETVLGVTSESFAGFLDHYEATVLPPRELAKGTLQLYAVHFRRFRKAFEGKAVDQ 118

Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS-VERPKRKTEGIR 172
           I+ + +   ++    TP +A Q    +  +F  A  +     NP  S + R ++K     
Sbjct: 119 ISIRMVAMMLDEL--TPRTANQCRALLIDIFNHAAAKGLCPDNPAASTINRIEKKQRKRH 176

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
             T E ++  +         R A +  L +  R +D      + ++     +  QKT   
Sbjct: 177 --TVEGLKLIREKSPAWL--RNAIDLALITAQRRTDILDMKFEDVREGFLYVIQQKTAKA 232

Query: 233 -----ITVELPDGFMKLL-AMTPIGKETFFINND-----------KQKMNA---TQFSIW 272
                I   +      ++          + ++             K           +  
Sbjct: 233 SDAAWIRFRVTPELQAVISRCRDNVASPYLVHRRPERLKQKQAQTKDHWTKIEERYLTRA 292

Query: 273 FKAKATKAGVNKSA--------HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           FKA    AG             H VR  S  +   AG    ++    G  + D  + Y K
Sbjct: 293 FKAAREDAGCYADWSDEEMPGFHEVRALSLHLYKKAGKDGQKIA---GHASEDMTKNYQK 349

Query: 325 G 325
            
Sbjct: 350 D 350


>gi|323183907|gb|EFZ69298.1| integrase [Escherichia coli 1357]
          Length = 321

 Score = 89.7 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 42/207 (20%), Positives = 78/207 (37%), Gaps = 10/207 (4%)

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYV-AINPCLSVERPKRKTEGIRPWTKEDM 179
           +   S+   PSS  + LT +  +F   +  E     +P    +R K +       T+E++
Sbjct: 99  ATRRSQGIKPSSINRDLTCISGMFTALIEAELFFGEHPIRGTKRLKEEKPDTGYLTQEEI 158

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239
               +    G   ++A    L +G R  ++ R   +++ +N  +    KT    TV + +
Sbjct: 159 ALLLAALD-GDNKKIAI-LCLSTGARWGEAARLKAENIIHNRVTFVKTKTNKPRTVPISE 216

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISAD 299
              K++A    G    F + D  +   T      KA      + ++ H +R   AT    
Sbjct: 217 AVAKMIADNKRG--FLFPDADYPRFRRT-----MKAIKPDLPMGQATHALRHSFATHFMI 269

Query: 300 AGATAHELMATYGWKTVDQAETYTKGA 326
            G +   L    G   ++Q   Y   A
Sbjct: 270 NGGSIITLQRILGHTRIEQTMVYAHFA 296


>gi|254417725|ref|ZP_05031449.1| site-specific recombinase, phage integrase family protein
           [Brevundimonas sp. BAL3]
 gi|196183902|gb|EDX78878.1| site-specific recombinase, phage integrase family protein
           [Brevundimonas sp. BAL3]
          Length = 309

 Score = 89.7 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 45/290 (15%), Positives = 87/290 (30%), Gaps = 31/290 (10%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISF----ESYFDQIIRKSGD----FDYRKITTKHIRSGV 123
             L++     AH   L+  +  ++      Y   + R  G+         +T   +R+ +
Sbjct: 10  DALLAWLEHLAHERRLSPRTLEAYGHIGRLYVAFLERHRGEALSLKGLGTVTAAEVRAHM 69

Query: 124 ESRK--HTPSSAIQFLTSMRVLFKWAVRQEYVAINPC---LSVERPKRKTEGIRPWTKED 178
             R+    P +A     S+  +  +    +     P      V  P+ K    RP T++ 
Sbjct: 70  AERRSGDHPLAARSLSQSLSAIRGFHAFLDRRLDTPAPQLALVRGPRIKPSLPRPVTEDQ 129

Query: 179 MQQFKSFWS--------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
            +   +  +        E ++ R     L   GLR S+                   K  
Sbjct: 130 ARGLLAEPNADPDAEPWEAARDRAVLTLLYGCGLRISEGLSLTRADAPLGETLRVLGKGS 189

Query: 231 TIITVELPDGFMKLLAMTPI-------GKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
               V +       +              +  F       ++        +    + G+ 
Sbjct: 190 KTRIVPVLPAVRAAVDAYLALQPFPLQPSDALFRARRGGPLSPRHVQASVQRLRGRLGLP 249

Query: 284 K--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           +  + H +R   AT    AGA    +    G  ++   + YT G D  RL
Sbjct: 250 ERTTPHALRHSFATHLLGAGADLRSIQELLGHASLSTTQKYT-GVDAERL 298


>gi|323701134|ref|ZP_08112809.1| integrase family protein [Desulfotomaculum nigrificans DSM 574]
 gi|323533736|gb|EGB23600.1| integrase family protein [Desulfotomaculum nigrificans DSM 574]
          Length = 394

 Score = 89.7 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 48/336 (14%), Positives = 104/336 (30%), Gaps = 38/336 (11%)

Query: 26  RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG 85
           R   G+R RL               +     + +          T    +  +       
Sbjct: 21  RDTEGKRKRLCRAF-KGTKKEAEKEMARLLLEIDSGQYIEPTKLTFGDYLLNWLTDYGKS 79

Query: 86  SLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRV 142
           +LA  +  S++   +  II + G    +K+   H++     +  +    +       +R 
Sbjct: 80  NLANTTYYSYQKIIEKHIIPEIGGILLQKLQPMHLQKYYSLKLDSLSKRTVQYHHRVIRE 139

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202
             K AV+ + V  N   +V  PK +   I   + E + +F    SE     + +  LL +
Sbjct: 140 ALKHAVQLQAVTRNVADAVAAPKPQRPEINMPSIEKINEFLVAASEHQDWSIIYTTLL-T 198

Query: 203 GLRCSDSCRAGVQHLQ--NNIFSIKT---------------QKTGTIITVELPDGFMKLL 245
           G+R  +        +     +  ++                +   +   V +P+  +++L
Sbjct: 199 GMRRGEVMGLRWSDVDFKQKVLHVRQTLQRLPKIGFYFAPPKSKKSRRPVVMPEALIEVL 258

Query: 246 AMTPI--------------GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVR 290
                                   F   D    + ++ +  +K      G+N    H +R
Sbjct: 259 KNHRKKQMENMLEMGEHYQDNNLVFCRPDGTPEDPSRLNHRYKDLVDGIGMNGFRFHDLR 318

Query: 291 KFSATISADAGATAHELMATYGWKT-VDQAETYTKG 325
              AT+  +       +    G +T +   + YT  
Sbjct: 319 HLHATLLMEQHVHPKIVQERLGHQTFIITLDLYTHS 354


>gi|154498677|ref|ZP_02037055.1| hypothetical protein BACCAP_02667 [Bacteroides capillosus ATCC
           29799]
 gi|150272416|gb|EDM99610.1| hypothetical protein BACCAP_02667 [Bacteroides capillosus ATCC
           29799]
          Length = 397

 Score = 89.7 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 67/398 (16%), Positives = 121/398 (30%), Gaps = 73/398 (18%)

Query: 13  KERTRHGKIIYYFRKGHGRRIRLPYPHE-------STFIPAYMSALTGSTP--KREYINS 63
           K R   G+I+   R G  +R    Y ++       + F+ A+    T  TP  KR+ I+ 
Sbjct: 4   KRRDSKGRIL---RTGESQRKDGRYAYKYTDACGKTQFVYAWKLVPTDKTPTGKRDDISL 60

Query: 64  PRKKPTTLKWL-------------ISEY-RKSAHWGSLAVNSRISFESYFDQI-IRKSGD 108
             K    L+ L                Y R+++H  ++  ++    E     +     G 
Sbjct: 61  REKVKEILRDLNDGIDTIGKKMTVCQLYARQNSHRKNVKRSTEKGREYLMSVLKSDPLGS 120

Query: 109 FDYRKITTKHIRSGVESRKHTPSS---AIQFLTSMRVLFKWAVRQEYVAINPCLSV--ER 163
                +     +           +      +  S++  F  A+  + +  NP        
Sbjct: 121 RSIDTVKLSDAKEWAIRMSEKGYAYKTINNWKRSLKAAFYTAIEDDCIRKNPFNFTMDTV 180

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL---AFEFLLYSGLRCSDSCRAGVQ-HLQN 219
            +  TE     T+E   +  +F       R        LL +GLR S+ C   V    +N
Sbjct: 181 LEDDTEEKVALTQEQEDRLLAFAGSDPVYRKYCDEIIVLLGTGLRVSELCGLTVDLDFEN 240

Query: 220 NIFSIKTQ--------------KTGTIIT-VELPDGFMKLLA--------MTPIG----K 252
               +  Q              KT   +  + + +   + L           P+      
Sbjct: 241 RRIDVDHQLLRDSELGYYVDAPKTKNGVRQIPMSEKVDQALKRAVKNRGKAAPVNIGGYT 300

Query: 253 ETFFINNDKQKMNATQFSIWF---------KAKATKAGVNKSAHGVRKFSATISADAGAT 303
              F+N       A+ +   F           K  +A  N + H +R    T  A AG  
Sbjct: 301 NFLFLNQSGLPKTASCYESMFQGLVRKYNKHHKPDEALPNITPHTMRHTFCTRLAQAGMN 360

Query: 304 AHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
             +L    G   +     Y   AD          ++++
Sbjct: 361 PKDLQYIMGHSNITMTLNYYAHADYAS-AKAAMDKLTA 397


>gi|91774765|ref|YP_544521.1| integron integrase [Methylobacillus flagellatus KT]
 gi|91708752|gb|ABE48680.1| Integron integrase [Methylobacillus flagellatus KT]
          Length = 334

 Score = 89.7 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 40/306 (13%), Positives = 86/306 (28%), Gaps = 62/306 (20%)

Query: 83  HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA----IQFLT 138
                ++ +  ++  +  + I   G    R +    I + +       + A     Q  +
Sbjct: 27  RLKHYSLRTEQAYVDWIKRYILFHGKRHPRDMGAADIEAFLTHLAVKRNVAASTQNQAKS 86

Query: 139 SMRVLFKWAVRQE--YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196
           ++  L++  +  E  ++      +V +           +  ++Q   +  S G+   +A 
Sbjct: 87  ALLYLYREVLEVELPWLD-----NVTQANVPKRLPVVLSVSEVQSVLAGLS-GTHALVA- 139

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLL--------- 245
             L   GLR  ++ R  V+ +        ++  K        LP+  +  L         
Sbjct: 140 ALLYGGGLRLMEAVRLRVKDVDIERREIVVREGKGFKDRVTMLPESVVSALKGHLVKVKM 199

Query: 246 ----AMTPIGKETFFI--------------------------------NNDKQKMNATQF 269
                +     E +                                     +  M+    
Sbjct: 200 LHEEDVAAGFGEVYLPFALDKKYPNAGRDWGWQYVFPSRQLSVDPRSGKTRRHHMDEKGV 259

Query: 270 SIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
               K     AG+ K  + H +R   AT    +G     +    G   V     YT   +
Sbjct: 260 QRAMKQAVFAAGIAKPATPHTLRHSFATHLLQSGYDIRTVQELLGHSDVSTTMIYTHVLN 319

Query: 328 RIRLGI 333
           R   G+
Sbjct: 320 RGGKGV 325


>gi|320201033|gb|EFW75617.1| Integrase [Escherichia coli EC4100B]
          Length = 380

 Score = 89.7 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 59/358 (16%), Positives = 111/358 (31%), Gaps = 50/358 (13%)

Query: 9   PFVTKERT-RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTG----------STPK 57
           P +  +   R GK+ + ++     R       E+        A T           S  +
Sbjct: 13  PNLYCKLDKRTGKVYWQYKHPLSGRFHSLGTDENEAKQVATEANTIIAEQRTRQILSVNE 72

Query: 58  REYINSPRKKPTTLKWLISEYRKSAH----WGSLAVNSRISFESYFDQIIRKSGDFDYRK 113
           R      R+   T+   + +Y            L  NS               G    + 
Sbjct: 73  RLERMKGRRSDITVTEWLDKYISIQEDRLQHNELRPNSYRQKGKPIRLFREHCGMQHLKD 132

Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMRVL----FKWAVRQEYVA--INPCLSVERPKRK 167
           IT   I   +++ K       +    +R++    FK A    +V    NP  + ++P+ +
Sbjct: 133 ITALDIAEIIDAVKAEGH--NRMAQVVRMVLIDVFKEAQHAGHVPPGFNPAQATKQPRNR 190

Query: 168 TEGIRPWTKEDMQQ-FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226
               R  +  + Q  F+S        +      L +G R  D C      + +++  I  
Sbjct: 191 VNRQR-LSLLEWQAIFESVSRRQPYLKCGMLLALVTGQRLGDICNLKFSDIWDDMLHITQ 249

Query: 227 QKTGTIITVELP---DGFMKLLAMTPIGKETFFIN-------------NDKQKMNATQFS 270
           +KTG+ + + L    D     L           ++             N   +++A   +
Sbjct: 250 EKTGSKLAIPLNLKCDALNITLREVISQCRDAVVSKYLVHYRHTTSQANRGDQVSANTLT 309

Query: 271 IWFKAKATKAGVNK------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
             FK    K G+        + H  R  S  +  + G    +L    G K+    + Y
Sbjct: 310 TAFKKAREKCGIKWEQGTAPTFHEQRSLSERLYREQGLDTQKL---LGHKSRKMTDRY 364


>gi|210611276|ref|ZP_03288831.1| hypothetical protein CLONEX_01021 [Clostridium nexile DSM 1787]
 gi|210152040|gb|EEA83047.1| hypothetical protein CLONEX_01021 [Clostridium nexile DSM 1787]
          Length = 327

 Score = 89.7 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 32/264 (12%), Positives = 82/264 (31%), Gaps = 14/264 (5%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----SRK 127
           +  +  +  +      +  +   +    + ++   G     ++TT+ +R  +      RK
Sbjct: 50  QDAVEAFITAKRIEGCSEKTLRYYRKTIESMLSAIGKKA-SQVTTEDLRKYLTTYQTQRK 108

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            +  +       +   F W   ++++  +P   + + K        +T E ++  +   +
Sbjct: 109 SSKVTIDNIRRILSSFFSWLEDEDFILKSPVRRIHKVKTAKLVKDTYTDEALELMRDNCT 168

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDG----FM 242
             ++     + L  SG+R  +      + +  N    +   K      V           
Sbjct: 169 T-TRDLAIIDLLASSGMRVGEMVMLNREDIDFNERECVVIGKGNKERLVYFDARTKIHLQ 227

Query: 243 KLLAMTPIGKETFF--INNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISAD 299
             L          F  +N    ++         +    +  + K   H  R+  AT + D
Sbjct: 228 NYLNERTDTNPALFVSLNPPHDRLMIGGVETRLRELGKRLNLPKVHPHKFRRTLATSAID 287

Query: 300 AGATAHELMATYGWKTVDQAETYT 323
            G    ++    G + +D    Y 
Sbjct: 288 KGMPIEQVQQLLGHQKIDTTMHYA 311


>gi|183600213|ref|ZP_02961706.1| hypothetical protein PROSTU_03756 [Providencia stuartii ATCC 25827]
 gi|188022509|gb|EDU60549.1| hypothetical protein PROSTU_03756 [Providencia stuartii ATCC 25827]
          Length = 426

 Score = 89.7 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 50/288 (17%), Positives = 97/288 (33%), Gaps = 35/288 (12%)

Query: 70  TLKWLISEYRKSAH-----------WGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTK 117
           T+K LI  Y                 G+     +I      +  +IR  G+     +T K
Sbjct: 115 TVKALIELYLVERIEDRKGKDGKIIAGARKKKGQIEVRRMLEADVIRVLGERMAHAVTRK 174

Query: 118 HIRSGVESRKHTPS--SAIQFLTSMRVLFKWAVRQEYVAIN---PCLSVE------RPKR 166
            +   V       +   A   L  +   +++A+  EY   N   P L  +      + K 
Sbjct: 175 DVIELVREIDGRGAKVQAGNVLRELSAAYEFAIGLEYFDDNFANPALLAKSSLQQAKFKL 234

Query: 167 KT-EGIRPWTKEDMQQFKSFWSEGSQ---PRLAFEFLLYSGLRCSDSCRAGVQHLQN--N 220
            + +G R     ++++F ++    +     +  F   L++G R  + C      +     
Sbjct: 235 TSNKGTRYLDDNELKKFLAWLPSSAYTNVVKNVFRLTLWTGCRTGEVCAMAWDDVDLEKG 294

Query: 221 IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM-----NATQFSIWFKA 275
              +K  KTG    V+LP+  +  L    +  + +   +   K+       T+ +   + 
Sbjct: 295 TIHLKETKTGIERYVQLPEQAVIYLKSMRMNSDKYLFPSQVTKLPIQQKYLTECAWRLRK 354

Query: 276 KATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           +     + + S H +R+   T  A  G       A  G        TY
Sbjct: 355 EGKMLDIPDWSPHDLRRTVRTGLAKLGCPNEVGEAILGHSRSGIEGTY 402


>gi|116619764|ref|YP_821920.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116222926|gb|ABJ81635.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 412

 Score = 89.7 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 39/265 (14%), Positives = 82/265 (30%), Gaps = 28/265 (10%)

Query: 86  SLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSG--VESRKHTPSSAIQFLTSM 140
            L+ ++ +++    +Q       +   +   +   H+       +R+ +P  A   +T++
Sbjct: 132 GLSPSTLLNYVPVAEQFLAERFHNAVPNVAMLRATHVTGFVLRHARQLSPVRAGLMVTAL 191

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKR--KTEGIRPWTKEDMQQFKSFWS----EGSQPRL 194
           R  F++   +  +A +    V        +   R      ++            G +   
Sbjct: 192 RSFFRYLRHRGVIATDLAACVPTVPNWSLSTLPRFLPTAAVESILECCDRTTSVGRRNHT 251

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVEL----PDGFMKLLAMT 248
               L   G+R  +     +  +       +I+  K G    + L           L   
Sbjct: 252 ILLLLARLGVRAGEVVGLSLDDIDWSTGQITIR-GKGGKSAQLPLVNDVGSALADYLRHD 310

Query: 249 PIGKET--FFINNDK---QKMNATQFSIWFKAKATKAGVNKSAHG----VRKFSATISAD 299
                T   F+ N        N++  S   +     AGV  SAH     +R   AT    
Sbjct: 311 RPRSATRRVFLRNRAPLVGFGNSSTISSLVRRALKHAGVE-SAHTGAHVLRHSLATSLLR 369

Query: 300 AGATAHELMATYGWKTVDQAETYTK 324
            G +  E+      ++ +    Y K
Sbjct: 370 QGGSLDEIGELLRHQSPNTTAIYAK 394


>gi|296272532|ref|YP_003655163.1| integrase family protein [Arcobacter nitrofigilis DSM 7299]
 gi|296096706|gb|ADG92656.1| integrase family protein [Arcobacter nitrofigilis DSM 7299]
          Length = 356

 Score = 89.7 bits (221), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 41/259 (15%), Positives = 88/259 (33%), Gaps = 26/259 (10%)

Query: 91  SRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI--QFLTSMRVLFKWA 147
           ++ +    +   I    G+    +I    I +       T S+         + V+F  A
Sbjct: 85  TQKNHLYVYKHNIKPYLGNKKLDEIKPSQIATWQNKLLETLSTKSLSMARAVLNVIFNDA 144

Query: 148 VRQEYVAINPCLSVERPKR-KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRC 206
           +  E +  NP   +++P    T  I+P++++++  FK   +   + R  F    ++G+R 
Sbjct: 145 IADEIILRNPLSVIKKPHNVPTREIKPFSQDEI--FKLLDNVNEKVRCYFAIGFFTGMRT 202

Query: 207 SDSCRAGVQHLQ--NNIFSIKTQK----------TGTIITVELP----DGFMKLLAMTPI 250
            +        +   N I  ++  K            +I  V++           L     
Sbjct: 203 GEILALKWSDIDYENGIIKVRRSKRQGIESEPKTKASIRDVDILDILIPYLKNHLKFKIP 262

Query: 251 GKETFFINNDKQKMNATQ--FSIWFKAKATKAGVNKS-AHGVRKFSATISADAGATAHEL 307
             +  F +N ++  N     F+ ++K    K  +     + +R   A++    G     +
Sbjct: 263 QSDYLFTSNFQKPYNDCMGIFARYWKPLFEKLDIQYRNPYQMRHTFASMMISNGEDILWV 322

Query: 308 MATYGWKTVDQA-ETYTKG 325
               G  T       Y K 
Sbjct: 323 SNMLGHTTSAMTLTKYAKY 341


>gi|329954304|ref|ZP_08295398.1| site-specific recombinase, phage integrase family [Bacteroides
           clarus YIT 12056]
 gi|328528010|gb|EGF54996.1| site-specific recombinase, phage integrase family [Bacteroides
           clarus YIT 12056]
          Length = 408

 Score = 89.7 bits (221), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 52/295 (17%), Positives = 93/295 (31%), Gaps = 36/295 (12%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIR------KSGDFDYRKITTKHIRSGVESRKH- 128
            +Y +     +    +   +E    ++I          D   + I    I   +   K+ 
Sbjct: 118 EQYLQKVK-MNTTDKTYSRYELTKKRLIEFMKFKYSVSDMLIKDINVVFIEDFLLYIKNN 176

Query: 129 ---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
              + ++A++F+   R +  +A     V  +P     R K +       T E++    + 
Sbjct: 177 YGCSHNTAMKFVQRFRTVVNFAKNTGLVTADP-FGSYRVKFERTDRDYLTMEEITAIYNH 235

Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVEL 237
                   Q R  F F  Y+ L   D C    + ++           K  KT    TV L
Sbjct: 236 KFCTKRLEQVRDLFIFSCYTALSYIDVCELRQEDIRTGFDGNLWIIRKRHKTNVTSTVRL 295

Query: 238 PDG----FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRK 291
            D       K     P GK    I+N K        + + K  A   G+ K  + H  R 
Sbjct: 296 LDIPKAILEKYKDKLPNGKILPVISNQK-------MNDYLKEIAAICGIEKNLTYHVARH 348

Query: 292 FSATI-SADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345
             AT      G     +    G   +   + Y +  D       +   ++  +D+
Sbjct: 349 SCATSVLLSNGVPIETVSKILGHTNIRTTQIYARITDLK--VSNDMEMLAQKLDA 401


>gi|296451332|ref|ZP_06893071.1| phage integrase family site-specific recombinase [Clostridium
           difficile NAP08]
 gi|296880316|ref|ZP_06904280.1| phage integrase family site-specific recombinase [Clostridium
           difficile NAP07]
 gi|296259829|gb|EFH06685.1| phage integrase family site-specific recombinase [Clostridium
           difficile NAP08]
 gi|296428681|gb|EFH14564.1| phage integrase family site-specific recombinase [Clostridium
           difficile NAP07]
          Length = 310

 Score = 89.3 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 44/258 (17%), Positives = 88/258 (34%), Gaps = 21/258 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE--SRKHTPSSAIQFLTSMRV 142
             L  N++  + S            +    T +  ++ V+    K+  S+  +  + +  
Sbjct: 27  TKLNPNTKHDYLSKVILFKEFLKGKELIYATKEDCKNFVDYIQTKYAKSTCEKIYSYLHS 86

Query: 143 LFKWAVRQEYVAINPCLSVERP---KRKTEGIRPWTKEDMQQFKSFWS-EGSQPRLAFEF 198
            + +  ++ Y+ INP   VE+P   + KT+     + +++ +          + R+    
Sbjct: 87  FYNFLKKEGYIDINPFRYVEKPTVTRIKTK-DDVLSIQEINKLIGILPKLNIRDRVIIVC 145

Query: 199 LLYSGLRCSDSCRAGVQHLQ---NNIFSIKTQKTGTIITVELPDGFMKLLA--------- 246
           L+ +G   ++      + L    N+   ++  K      V+L   F KLL          
Sbjct: 146 LVTTGCLLNELVSLKWKDLMVDENDNSYVRLGKGRKERVVKLHPYFFKLLEDYRNYSGLP 205

Query: 247 -MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATA 304
            +     +  F       +      +  K     AG+   SA   R   A IS   GA  
Sbjct: 206 EVIIPSDDFIFTTQKSNSITDRNVRLIVKKALDLAGLSQYSARDFRHSFAAISLRLGADE 265

Query: 305 HELMATYGWKTVDQAETY 322
            ++    GW     A  Y
Sbjct: 266 SDVKNQLGWSDKYYAIRY 283


>gi|227875947|ref|ZP_03994070.1| possible integrase/recombinase XerD [Mobiluncus mulieris ATCC
           35243]
 gi|227843479|gb|EEJ53665.1| possible integrase/recombinase XerD [Mobiluncus mulieris ATCC
           35243]
          Length = 361

 Score = 89.3 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 35/259 (13%), Positives = 78/259 (30%), Gaps = 49/259 (18%)

Query: 115 TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
             +     +  R  + ++  + + S R    WA++  +++ +  L +  PK         
Sbjct: 86  RIRAWLGDMSRRGASRATLARRVASFRTFSAWALKHGFMSCDSGLRLHSPKPDNSLPTVL 145

Query: 175 TKEDMQQFKSFW-----------------------------------SEGSQPRLAFEFL 199
           ++  + +  +                                       G +     E L
Sbjct: 146 SEAQVARLLNTARLQAYSLGVHQKASKSQAEIPDSIPGDSAVPNRVNPVGLRDWALLELL 205

Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE------------LPDGFMKLLA 246
             +G+R S+     ++ +  +  +I+   K G                  L  G   L++
Sbjct: 206 YATGVRVSELTGLRLRDISRSEATIRVCGKGGKERVAPYGIPAGIALDEYLEQGRPVLVS 265

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAH 305
                 E  F+     +++              AGV +   HG+R  +AT   + GA   
Sbjct: 266 PDRDAGEWVFLGVKGGRLDTRLVRGMLHRMTAVAGVPDLGPHGLRHTAATHLLNGGADLR 325

Query: 306 ELMATYGWKTVDQAETYTK 324
            +    G  ++   + YT 
Sbjct: 326 CVQEILGHASLGTTQRYTH 344


>gi|126698932|ref|YP_001087829.1| putative tyrosine recombinase [Clostridium difficile 630]
 gi|254974878|ref|ZP_05271350.1| putative tyrosine recombinase [Clostridium difficile QCD-66c26]
 gi|255092265|ref|ZP_05321743.1| putative tyrosine recombinase [Clostridium difficile CIP 107932]
 gi|255100354|ref|ZP_05329331.1| putative tyrosine recombinase [Clostridium difficile QCD-63q42]
 gi|255306292|ref|ZP_05350463.1| putative tyrosine recombinase [Clostridium difficile ATCC 43255]
 gi|255314005|ref|ZP_05355588.1| putative tyrosine recombinase [Clostridium difficile QCD-76w55]
 gi|255516685|ref|ZP_05384361.1| putative tyrosine recombinase [Clostridium difficile QCD-97b34]
 gi|255649784|ref|ZP_05396686.1| putative tyrosine recombinase [Clostridium difficile QCD-37x79]
 gi|306519888|ref|ZP_07406235.1| putative tyrosine recombinase [Clostridium difficile QCD-32g58]
 gi|115250369|emb|CAJ68191.1| putative phage tyrosine recombinase [Clostridium difficile]
          Length = 302

 Score = 89.3 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 44/258 (17%), Positives = 88/258 (34%), Gaps = 21/258 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE--SRKHTPSSAIQFLTSMRV 142
             L  N++  + S            +    T +  ++ V+    K+  S+  +  + +  
Sbjct: 20  TKLNPNTKHDYLSKVILFKEFLKGKELIYATKEDCKNFVDYIQTKYAKSTCEKIYSYLHS 79

Query: 143 LFKWAVRQEYVAINPCLSVERP---KRKTEGIRPWTKEDMQQFKSFWS-EGSQPRLAFEF 198
            + +  ++ Y+ INP   VE+P   + KT+     + +++ +          + R+    
Sbjct: 80  FYNFLKKEGYIDINPFRYVEKPTVTRIKTK-DDVLSIQEINKLIGILPKLNIRDRVIIVC 138

Query: 199 LLYSGLRCSDSCRAGVQHLQ---NNIFSIKTQKTGTIITVELPDGFMKLLA--------- 246
           L+ +G   ++      + L    N+   ++  K      V+L   F KLL          
Sbjct: 139 LVTTGCLLNELVSLKWKDLMVDENDNSYVRLGKGRKERVVKLHPYFFKLLEDYRNYSGLP 198

Query: 247 -MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATA 304
            +     +  F       +      +  K     AG+   SA   R   A IS   GA  
Sbjct: 199 EVIIPSDDFIFTTQKSNSITDRNVRLIVKKALDLAGLSQYSARDFRHSFAAISLRLGADE 258

Query: 305 HELMATYGWKTVDQAETY 322
            ++    GW     A  Y
Sbjct: 259 SDVKNQLGWSDKYYAIRY 276


>gi|260682941|ref|YP_003214226.1| putative tyrosine recombinase [Clostridium difficile CD196]
 gi|260686539|ref|YP_003217672.1| putative tyrosine recombinase [Clostridium difficile R20291]
 gi|260209104|emb|CBA62271.1| putative tyrosine recombinase [Clostridium difficile CD196]
 gi|260212555|emb|CBE03527.1| putative tyrosine recombinase [Clostridium difficile R20291]
          Length = 309

 Score = 89.3 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 44/258 (17%), Positives = 88/258 (34%), Gaps = 21/258 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE--SRKHTPSSAIQFLTSMRV 142
             L  N++  + S            +    T +  ++ V+    K+  S+  +  + +  
Sbjct: 27  TKLNPNTKHDYLSKVILFKEFLKGKELIYATKEDCKNFVDYIQTKYAKSTCEKIYSYLHS 86

Query: 143 LFKWAVRQEYVAINPCLSVERP---KRKTEGIRPWTKEDMQQFKSFWS-EGSQPRLAFEF 198
            + +  ++ Y+ INP   VE+P   + KT+     + +++ +          + R+    
Sbjct: 87  FYNFLKKEGYIDINPFRYVEKPTVTRIKTK-DDVLSIQEINKLIGILPKLNIRDRVIIVC 145

Query: 199 LLYSGLRCSDSCRAGVQHLQ---NNIFSIKTQKTGTIITVELPDGFMKLLA--------- 246
           L+ +G   ++      + L    N+   ++  K      V+L   F KLL          
Sbjct: 146 LVTTGCLLNELVSLKWKDLMVDENDNSYVRLGKGRKERVVKLHPYFFKLLEDYRNYSGLP 205

Query: 247 -MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATA 304
            +     +  F       +      +  K     AG+   SA   R   A IS   GA  
Sbjct: 206 EVIIPSDDFIFTTQKSNSITDRNVRLIVKKALDLAGLSQYSARDFRHSFAAISLRLGADE 265

Query: 305 HELMATYGWKTVDQAETY 322
            ++    GW     A  Y
Sbjct: 266 SDVKNQLGWSDKYYAIRY 283


>gi|138558|sp|P27077|VINT_BPP21 RecName: Full=Integrase
 gi|215450|gb|AAA32336.1| integrase [Phage 21]
 gi|16209107|gb|AAL09871.1| integrase [CRIM helper plasmid pAH121]
 gi|16209114|gb|AAL09876.1| integrase [CRIM helper plasmid pAH122]
          Length = 380

 Score = 89.3 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 59/358 (16%), Positives = 111/358 (31%), Gaps = 50/358 (13%)

Query: 9   PFVTKERT-RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTG----------STPK 57
           P +  +   R GK+ + ++     R       E+        A T           S  +
Sbjct: 13  PNLYCKLDKRTGKVYWQYKHPLSGRFHSLGTDENEAKQVATEANTIIAEQRTRQILSVNE 72

Query: 58  REYINSPRKKPTTLKWLISEYRKSAH----WGSLAVNSRISFESYFDQIIRKSGDFDYRK 113
           R      R+   T+   + +Y            L  NS               G    + 
Sbjct: 73  RLERMKGRRSDITVTEWLDKYISIQEDRLQHNELRPNSYRQKGKPIRLFREHCGMQHLKD 132

Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMRVL----FKWAVRQEYVA--INPCLSVERPKRK 167
           IT   I   +++ K       +    +R++    FK A    +V    NP  + ++P+ +
Sbjct: 133 ITALDIAEIIDAVKAEGH--NRMAQVVRMVLIDVFKEAQHAGHVPPGFNPAQATKQPRNR 190

Query: 168 TEGIRPWTKEDMQQ-FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226
               R  +  + Q  F+S        +      L +G R  D C      + +++  I  
Sbjct: 191 VNRQR-LSLLEWQAIFESVSRRQPYLKCGMLLALVTGQRLGDICNLKFSDIWDDMLHITQ 249

Query: 227 QKTGTIITVELP---DGFMKLLAMTPIGKETFFIN-------------NDKQKMNATQFS 270
           +KTG+ + + L    D     L           ++             N   +++A   +
Sbjct: 250 EKTGSKLAIPLNLKCDALNITLREVISQCRDAVVSKYLVHYRHTTSQANRGDQVSANTLT 309

Query: 271 IWFKAKATKAGVNK------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
             FK    K G+        + H  R  S  +  + G    +L    G K+    + Y
Sbjct: 310 TAFKKAKEKCGIKWEQGTAPTFHEQRSLSERLYREQGLDTQKL---LGHKSRKMTDRY 364


>gi|317055794|ref|YP_004104261.1| integrase family protein [Ruminococcus albus 7]
 gi|315448063|gb|ADU21627.1| integrase family protein [Ruminococcus albus 7]
          Length = 415

 Score = 89.3 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 48/305 (15%), Positives = 93/305 (30%), Gaps = 66/305 (21%)

Query: 85  GSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRSGV----ESRKHTPSSAIQFLTS 139
             L  N+  +++  ++Q +  K G      +    +R+      + R    +S     T 
Sbjct: 84  KGLKDNTFSNYKYSYEQFVEPKFGRIKLTDLKRTDVRAFYNYLADERHIKVNSIDCIHTV 143

Query: 140 MRVLFKWAVRQEYVAINPCLS-VERPKRKT----EGIRPWTKEDMQQFKSFWSE---GSQ 191
           +  + + AV  +Y+  NP  + ++  KR      +  R  T E+ Q F+++ ++    + 
Sbjct: 144 LHQVLELAVEDDYLRYNPSDNALKELKRAHSSDFDTRRALTLEEQQIFENYLADSAKYAH 203

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQ---------------------NNIFSIKTQKT- 229
               F  +L++G+R  +      + +                         F++ T KT 
Sbjct: 204 WLPIFTVMLWTGMRVGELTGLRWEDVDFEENTISVNHTLVYFSMGKQNGCTFAVNTPKTE 263

Query: 230 -GTIITVELPDGFMKLLAMTPIGKET--------------FFINNDKQKMNATQFSIWFK 274
            G      LP     LL      +E                F+N      +    +   K
Sbjct: 264 AGKRAIPMLPKVREALLKEKAFQEEVGITCKAEVDGFSNFIFVNRFGNVQHQGTLNKALK 323

Query: 275 AKATKAG---------------VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
                                  N S H +R    T   +AG     +    G   V+  
Sbjct: 324 RIIRDCNYELLDNSGGKEVTTLPNFSNHSLRHTFTTRMCEAGVNIKAMQDILGHADVETT 383

Query: 320 -ETYT 323
              Y 
Sbjct: 384 LGIYA 388


>gi|300770347|ref|ZP_07080226.1| possible integrase [Sphingobacterium spiritivorum ATCC 33861]
 gi|300762823|gb|EFK59640.1| possible integrase [Sphingobacterium spiritivorum ATCC 33861]
          Length = 312

 Score = 89.3 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 34/258 (13%), Positives = 85/258 (32%), Gaps = 24/258 (9%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFK 145
            L+ ++   ++    Q +       +   T  + +  +     + S+  ++  S ++  +
Sbjct: 36  DLSQSTIKDYKYRIGQFLDYVNSSGFNHNTLLNYKRQLIKCDFSVSTKNKYFISAKIFLR 95

Query: 146 WAVRQEYVAINPCLSVERPK----RKTEGIRPWTKEDMQQFKSFW------SEGSQPRLA 195
              R +Y+  +  ++V+  K     K +G    + +D+   ++         E  + +  
Sbjct: 96  ELYRLDYLEKDITINVKGFKQNHQHKKDG---LSDDDISILQNHCKTLQPTPENLRLKAI 152

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPD----GFMKLLAMTP 249
               L+ GLR  + CR  ++ +   N    +  +       + L         + L  T 
Sbjct: 153 ISLFLFQGLRQIEVCRLDIKDIDLKNKCAFVHGKGRDDKELIWLHPFTVKAVKEYLKCTR 212

Query: 250 IGKETFFINN----DKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATA- 304
                 F +N       ++         K      G++ + HG R F  T    +     
Sbjct: 213 FKDGALFRSNSNFCRNHRLTTKSIRTIIKGLLNDLGIDGTTHGFRHFFTTRLIKSYKGEL 272

Query: 305 HELMATYGWKTVDQAETY 322
             +      +++   E Y
Sbjct: 273 LTVSKYTRHRSIQMLEVY 290


>gi|148260174|ref|YP_001234301.1| phage integrase family protein [Acidiphilium cryptum JF-5]
 gi|146401855|gb|ABQ30382.1| phage integrase family protein [Acidiphilium cryptum JF-5]
          Length = 412

 Score = 89.3 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 57/352 (16%), Positives = 108/352 (30%), Gaps = 34/352 (9%)

Query: 7   LPPFVTKERTRHGKIIYY-FRKGHG-RRIRLPYPHESTFIPAYMSALT-------GSTPK 57
           LP F  +  +   K     +R   G RR+ L      +   A  +A         G  P 
Sbjct: 27  LPGFGVRVTSTGSKTYLAQYRGATGVRRVSLGKHGVISLADARNAARAILGQVASGGDPI 86

Query: 58  REYINSPRKKPT-------TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD 110
            E                 T++ LI+ +       S   +      +     +       
Sbjct: 87  AERRAKDEAARQAQSEAAFTVEALIAAWVADRQ-ESRRASYLKVAAAALRTHLAHLLTVP 145

Query: 111 YRKITTKHIRSGVESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168
              +T +   + ++  K    P +  + L   R  F WA +++ +A+NP   +ERP R+ 
Sbjct: 146 ASAMTVRQAVAALDRVKAAAGPVAGNRLLAYARACFGWACKRQRLAMNPFAGLERPAREK 205

Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPRLAFE-FLLYSGLRCSDSCRAGVQHLQNNIFSIK-- 225
              R  T  ++       +    P   F   L+ +  R  +        +  +  +    
Sbjct: 206 SRDRVLTDAEIGAIWRAAALLDYPAGQFTRMLMLTLGRRDEVASMRWTEIAADGLTWSLP 265

Query: 226 --TQKTGTIITVELPDGFMKLLAMTPI--GKETFFINNDKQKMNATQFSIWFKAKATKAG 281
               K G    V L +    +L+  P     +  F    ++ ++          +A +A 
Sbjct: 266 ADRAKNGKSHVVHLSEPARGILSALPRFENSDFLFTTTGERPISGFSGFKLAIDRAIEAD 325

Query: 282 V-----NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ---AETYTKG 325
           +     +   H  R+   T  A AG   H         +      A  Y + 
Sbjct: 326 LGRGIADWRFHDFRRAGVTWLAGAGFPPHVADKLLNHMSGSIQGVAAVYQRA 377


>gi|29830271|ref|NP_824905.1| integrase [Streptomyces avermitilis MA-4680]
 gi|29607382|dbj|BAC71440.1| putative tyrosine-family recombinase/integrase [Streptomyces
           avermitilis MA-4680]
          Length = 379

 Score = 89.3 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 54/358 (15%), Positives = 109/358 (30%), Gaps = 39/358 (10%)

Query: 19  GKIIYYFRKGHGRRIR-LPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISE 77
           G+    +R      +R     +E+            +   R     P           + 
Sbjct: 20  GRWQVRYRDPQTGLLRPAEKTYETKTDAQVALTHIEADITRGQWADPDAGDVNFADYATA 79

Query: 78  YRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSA 133
           + +      LA  +R   ES     ++   G      +TT  +RS             + 
Sbjct: 80  WLRD---RKLADRTRERNESVMRLHVVPVFGAGSIADVTTARVRSWRGKLLAAGVGEPTV 136

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
           ++    +R L   AV  E +  NPC                +  ++  F   ++   + R
Sbjct: 137 VKAYQLLRALMNTAVDDELIRRNPCRIKGADSYDVPERPVLSVAEV--FGVAYAIAPRYR 194

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII-----------------TVE 236
           L      ++ LR  +      + +  N   +  ++    +                 TV 
Sbjct: 195 LLVLLAAFTTLRFGELAALRRKDIDLNGRLVVVRRAQAELQNGRLFDKAPKSAAGLRTVS 254

Query: 237 LPDGFMKLL------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHG 288
            P   +  +            +   F+     ++  + F   +      AGV      H 
Sbjct: 255 FPAELVDEISHHLKHYAADGQEGHLFVGPQGGQLRRSNFRDDWIKARKAAGVSPKLHFHD 314

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSRRISSVVDS 345
           +R    T+++ AGA+  ELM   G  +   A  Y    +DR R     + R+ +++ +
Sbjct: 315 LRHTGNTLASTAGASTRELMTRMGHSSSRAALIYQHMTSDRDR---TIADRLGAMIRN 369


>gi|193062841|ref|ZP_03043934.1| integrase [Escherichia coli E22]
 gi|192931484|gb|EDV84085.1| integrase [Escherichia coli E22]
          Length = 337

 Score = 89.3 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 78/230 (33%), Gaps = 12/230 (5%)

Query: 98  YFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYV-AIN 156
            F +I      F   K            +   P+S  + LT +  +F   +  E     +
Sbjct: 88  IFTRITDDPCAFQITKALISQYSMTRRGQGIKPTSINRDLTCLSGMFTALIDAELFFGEH 147

Query: 157 PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216
           P   +++ K +       T+E++    +    G   ++A    L +G R  ++ +   ++
Sbjct: 148 PFRGMKKLKEQKPETGYLTQEEITLLLANLD-GDNKKIAI-LCLSTGARWGEAAKLKAEN 205

Query: 217 LQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK 276
           +  N  +    KT    TV + +    ++A    GK   F +    K   T      K  
Sbjct: 206 VIQNRVTFVKTKTNKPRTVPISEEVAVMIA----GKGYLFPDASYPKFRRT-----MKDV 256

Query: 277 ATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
                  ++ H +R   AT     G +   L    G   ++Q   Y   A
Sbjct: 257 KPDLPDGQATHALRHSFATHFMINGGSIITLQRILGHSRIEQTMVYAHFA 306


>gi|327313820|ref|YP_004329257.1| site-specific recombinase, phage integrase family [Prevotella
           denticola F0289]
 gi|326944777|gb|AEA20662.1| site-specific recombinase, phage integrase family [Prevotella
           denticola F0289]
          Length = 428

 Score = 89.3 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 39/215 (18%), Positives = 76/215 (35%), Gaps = 27/215 (12%)

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQQFKSFWSEG 189
           ++AI+ L + + +  +  +      +P L++  + KR   G    T E++        E 
Sbjct: 182 NTAIKTLKTFKTVIIFGRKAGVFNHDPFLNIHFKTKRVDRGF--LTDEEVDTI--MHKEF 237

Query: 190 SQPRL-----AFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDG 240
           +  RL      F F  ++GL   D       ++             QKT T+  + L D 
Sbjct: 238 ATQRLVNVRDIFLFSCFTGLAYVDVANLTPDNIITMDGKQWIVTARQKTDTLSHILLLDI 297

Query: 241 ----FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSA 294
                 K       G+    ++N        + + + K  A   G+NK  + H  R   A
Sbjct: 298 PKIIIKKYEGKAKNGRLIPILSN-------QRMNSYLKEIADVCGINKNLTFHMARHTFA 350

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           T+    G     +    G  ++   + Y +  ++ 
Sbjct: 351 TMMLTKGVPVESVSKMLGHTSITTTQLYARITNKK 385


>gi|331672648|ref|ZP_08373437.1| integrase [Escherichia coli TA280]
 gi|331070291|gb|EGI41657.1| integrase [Escherichia coli TA280]
          Length = 380

 Score = 89.3 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 59/358 (16%), Positives = 110/358 (30%), Gaps = 50/358 (13%)

Query: 9   PFVTKERT-RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTG----------STPK 57
           P +  +   R GK+ + ++     R       E+        A T           S  +
Sbjct: 13  PNLYCKLDKRTGKVYWQYKHPLSGRFHSLGTDENEAKQVATEANTIIAEQRTRQILSVNE 72

Query: 58  REYINSPRKKPTTLKWLISEYRKSAH----WGSLAVNSRISFESYFDQIIRKSGDFDYRK 113
           R      R+   T+   + +Y            L  NS               G    + 
Sbjct: 73  RLERMKGRRSDITVTEWLDKYISIQEDRLQHNELRPNSYRQKGKPIRLFREHCGMQHLKD 132

Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMRVL----FKWAVRQEYVA--INPCLSVERPKRK 167
           IT   I   +++ K       +    +R++    FK A    +V    NP  + ++P+ +
Sbjct: 133 ITALDIAEIIDAVKAEGH--NRMAQVVRMVLIDVFKEAQHAGHVPPGFNPAQATKQPRNR 190

Query: 168 TEGIRPWTKEDMQQ-FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226
               R  +  + Q  F S        +      L +G R  D C      + +++  I  
Sbjct: 191 VNRQR-LSLPEWQAIFDSVSRRQPYLKCGMLLALVTGQRLGDICNLKFSDIWDDMLHITQ 249

Query: 227 QKTGTIITVELP---DGFMKLLAMTPIGKETFFIN-------------NDKQKMNATQFS 270
           +KTG+ + + L    D     L           ++             N   +++A   +
Sbjct: 250 EKTGSKLAIPLNLKCDALNITLREVISQCRDAVVSKYLVHYRHTTSQANRGDQVSANTLT 309

Query: 271 IWFKAKATKAGVNK------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
             FK    K G+        + H  R  S  +  + G    +L    G K+    + Y
Sbjct: 310 TAFKKAREKCGIKWEQGTAPTFHEQRSLSERLYREQGLDTQKL---LGHKSRKMTDRY 364


>gi|300872287|gb|ADK38971.1| IntI4 [Vibrio sp. V89(2010)]
          Length = 297

 Score = 89.3 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 43/292 (14%), Positives = 88/292 (30%), Gaps = 57/292 (19%)

Query: 90  NSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVR 149
            +  ++  +  + I          +  K +   +         A +  +       +  +
Sbjct: 5   KTIEAYLHWITRYIHFHNKKHPSLMGDKEVEEFLTYLAVQGKVATKTQSLALNSLSFLYK 64

Query: 150 QEYVAINP-CLSVE--RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRC 206
           +  +   P  L +   R + + +     T++++++         + +L  + L  SGLR 
Sbjct: 65  E--ILKTPLSLEIRFQRSQLERKLPVVLTRDEIRRLLEIVDP--KHQLPIKLLYGSGLRL 120

Query: 207 SDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLAMTPIGKETFFINN----- 259
            +  R  VQ +  +  +I+    K G   TV L       L       + ++  +     
Sbjct: 121 MECMRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHLKEQIALAKRYYDRDLHQKN 180

Query: 260 -----------------------------------------DKQKMNATQFSIWFKAKAT 278
                                                     +  MN T      +  A 
Sbjct: 181 YGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVMRRHHMNETVLQKAVRRAAQ 240

Query: 279 KAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           +AG+ K+   H +R   AT S + GA    +    G   V   + YT   DR
Sbjct: 241 EAGIEKTVTCHTLRHSFATHSLEVGADIRTVQELLGHTDVKTTQIYTHVLDR 292


>gi|288802660|ref|ZP_06408098.1| integrase [Prevotella melaninogenica D18]
 gi|299141691|ref|ZP_07034827.1| integrase [Prevotella oris C735]
 gi|288334810|gb|EFC73247.1| integrase [Prevotella melaninogenica D18]
 gi|298577027|gb|EFI48897.1| integrase [Prevotella oris C735]
          Length = 403

 Score = 89.3 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 39/215 (18%), Positives = 76/215 (35%), Gaps = 27/215 (12%)

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQQFKSFWSEG 189
           ++AI+ L + + +  +  +      +P L++  + KR   G    T E++        E 
Sbjct: 157 NTAIKTLKTFKTVIIFGRKAGVFNHDPFLNIHFKTKRVDRGF--LTDEEVDTI--MHKEF 212

Query: 190 SQPRL-----AFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDG 240
           +  RL      F F  ++GL   D       ++             QKT T+  + L D 
Sbjct: 213 ATQRLVNVRDIFLFSCFTGLAYVDVANLTPDNIITMDGKQWIVTARQKTDTLSHILLLDI 272

Query: 241 ----FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSA 294
                 K       G+    ++N        + + + K  A   G+NK  + H  R   A
Sbjct: 273 PKIIIKKYEGKAKNGRLIPILSN-------QRMNSYLKEIADVCGINKNLTFHMARHTFA 325

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           T+    G     +    G  ++   + Y +  ++ 
Sbjct: 326 TMMLTKGVPVESVSKMLGHTSITTTQLYARITNKK 360


>gi|281425478|ref|ZP_06256391.1| integrase [Prevotella oris F0302]
 gi|281400471|gb|EFB31302.1| integrase [Prevotella oris F0302]
          Length = 428

 Score = 89.3 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 39/215 (18%), Positives = 76/215 (35%), Gaps = 27/215 (12%)

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQQFKSFWSEG 189
           ++AI+ L + + +  +  +      +P L++  + KR   G    T E++        E 
Sbjct: 182 NTAIKTLKTFKTVIIFGRKAGVFNHDPFLNIHFKTKRVDRGF--LTDEEVDTI--MHKEF 237

Query: 190 SQPRL-----AFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDG 240
           +  RL      F F  ++GL   D       ++             QKT T+  + L D 
Sbjct: 238 ATQRLVNVRDIFLFSCFTGLAYVDVANLTPDNIITMDGKQWIVTARQKTDTLSHILLLDI 297

Query: 241 ----FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSA 294
                 K       G+    ++N        + + + K  A   G+NK  + H  R   A
Sbjct: 298 PKIIIKKYEGKAKNGRLIPILSN-------QRMNSYLKEIADVCGINKNLTFHMARHTFA 350

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           T+    G     +    G  ++   + Y +  ++ 
Sbjct: 351 TMMLTKGVPVESVSKMLGHTSITTTQLYARITNKK 385


>gi|261245548|emb|CBG23343.1| integrase [Salmonella enterica subsp. enterica serovar Typhimurium
           str. D23580]
          Length = 331

 Score = 89.3 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 46/249 (18%), Positives = 89/249 (35%), Gaps = 34/249 (13%)

Query: 97  SYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAIN 156
              D+  RK+G                + +    ++    L+ ++ L + A  +E+  ++
Sbjct: 64  KLMDEACRKNGKQPPV----------FKPKPAAVATKATHLSFIKALLR-AAEREWKMLD 112

Query: 157 PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216
               ++ P+ K + IR     + ++      E  +     EF L +GLR S+      Q 
Sbjct: 113 KAPIIKVPQPKNKRIRWLEPHEAKRLIDECQEPLKS--VVEFALSTGLRRSNIINLEWQQ 170

Query: 217 LQNN----IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK----------- 261
           +           +  K+   I V L D   ++L    IG    ++   K           
Sbjct: 171 IDMQRKVAWIHPEQSKSNHAIGVALNDTACRVLKKQ-IGNHHKWVFVYKESSTKPDGTKS 229

Query: 262 ---QKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVD 317
              +KM     + W +A   +AG+ +   H +R   A+    AG     L    GW++++
Sbjct: 230 PVVRKMRYDANTAW-RAALKRAGIEDFRFHDLRHTWASWLVQAGVPISVLQEMGGWESIE 288

Query: 318 QAETYTKGA 326
               Y   A
Sbjct: 289 MVRRYAHLA 297


>gi|315173579|gb|EFU17596.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX1346]
          Length = 378

 Score = 89.3 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 58/361 (16%), Positives = 119/361 (32%), Gaps = 50/361 (13%)

Query: 18  HGKIIYYFRKGHG---RRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR-KKPTTLKW 73
           +GK  Y+ R       +  R+     S    A   A+     K       + ++  +L+ 
Sbjct: 8   NGKFKYFERYKDPYTEKYRRVSVTLNSKSNQAKKQAMMELQDKINNRMEKKDQQKVSLEN 67

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG-DFDYRKITTKHIRSGVESRKHTPSS 132
           L++ + +     S+   S  ++      I      D   R   TK  +  +    H+   
Sbjct: 68  LLNSWWQQHQ-LSIRKTSVKAYGKILKYIFSNMNVDVLIRNTDTKFFQDFINDLPHSWEY 126

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVE--RPKRKTEGIR-----PWTKEDMQQFKSF 185
             +F + + + F +A     +  NP   V+  +P    E           ++++ Q  ++
Sbjct: 127 KKKFKSVLNMSFTYAQDMGMIDENPINRVKVVKPPLTKENFENIESKYLEEKEVYQLLNY 186

Query: 186 WSEG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------------ 229
           +          RLA EF+  +GLR  ++    +     N  +I    T            
Sbjct: 187 YYSTFQSVHHGRLA-EFMYLTGLRAGEAISLTINDYVKNEHAILVNGTLDYSSGYKNATK 245

Query: 230 ------GTIITVELPDGFMKLLAMTPIGKE--------TFFINNDKQKMNATQFSIWFKA 275
                  +   VEL +  +K++    + +E          F+    + +    F+   K 
Sbjct: 246 ELPKTLASFRKVELSNRAVKIIEELILEREIKFKEQTNYLFVGKTGKPIQVNSFNASLKK 305

Query: 276 KATKAGVNK-----SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRI 329
                G NK     S+H  R    ++ A+       +M   G    +   + YT    + 
Sbjct: 306 ANESLGKNKINKTISSHIFRHSHISLLAELNVPVKAIMERVGHVDTETTLKIYTHVTKKA 365

Query: 330 R 330
           +
Sbjct: 366 K 366


>gi|315173382|gb|EFU17399.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX1346]
          Length = 387

 Score = 89.3 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 59/341 (17%), Positives = 110/341 (32%), Gaps = 48/341 (14%)

Query: 50  ALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF 109
           AL     + E     +    T + +   + ++        +   +   +   I    G  
Sbjct: 48  ALARLEMEIERNGIKQSSSITFQEIAVLWLENYKNTVKDSSYSRTNIIFNKHIFPHFGKI 107

Query: 110 DYRKITTKHIRSGVESRKHTPSSAIQ--FLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167
           +  KI T + +  V +     +S     FL  M  +FK+A+     A NP  +V  PK K
Sbjct: 108 EIAKINTAYCQKIVNNWHTNGTSKQYPLFLNYMNKVFKFAINMGVTAENPTTNVIIPKNK 167

Query: 168 TEGIRPWTK------EDMQQFKS-FWSEGS-------QPRLAFEFLLYSGLRCSDSCRAG 213
                  TK      + +Q+F      +         +    F  L +SG R  +     
Sbjct: 168 ETANPKDTKIKFYNKDQLQKFLECIHQQPQENNYITIRDYTLFRLLSFSGCRIGELLALT 227

Query: 214 VQHLQNNIFSIK---------------TQKTGTIITVELPDGF-MKLLAMTPIGKETFFI 257
              L      ++               T KT     + + D   ++ L      ++ F  
Sbjct: 228 WDDLNLETGELQINKTVTKSDKYYVSSTPKTKKSNRIIILDRITLECLKKWRSEQKKFLF 287

Query: 258 -----------NNDKQKMNA-TQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATA 304
                       ND  +       +  +K    KA + N   HG R   A++  +AGA  
Sbjct: 288 KLGFTQPSRIFTNDSNEFTINQSVTERYKIYQKKANLPNIGLHGFRHTHASLLYNAGADH 347

Query: 305 HELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVVD 344
            E+    G   +    +TYT   D  +     + ++++ + 
Sbjct: 348 KEVQERLGHANIKTTLDTYTHLTDDRK--EVTTEKLANYIG 386


>gi|295107446|emb|CBL04989.1| Site-specific recombinase XerD [Gordonibacter pamelaeae 7-10-1-b]
          Length = 356

 Score = 89.3 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 50/342 (14%), Positives = 107/342 (31%), Gaps = 38/342 (11%)

Query: 14  ERTRHGKIIY---YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
            +  +    Y   Y+R   G +    +  +  F     +A+  S  K            T
Sbjct: 4   YKDDNNGTYYVQCYYRDARGSK---RHKTKRGFSSEVEAAVWESQFKSLNGG---AMDMT 57

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKH- 128
               +  Y        +  ++ I+ E    D+++   GD     +    +          
Sbjct: 58  FSEFVEVYASEVK-PRIREHTWITKEYIINDKLVPFFGDMRMCDVRPIDVIRWQNELTEH 116

Query: 129 -----TPSSAIQFLTS---MRVLFKWAVRQEYVAINPCLSVERPKRKTEG-IRPWTKEDM 179
                 P +     T    +  +F  A R   +  NP   V++   K  G ++ WTK++ 
Sbjct: 117 RDADGKPWAPTYLRTVNNQLNAIFNHAERYYGLTDNPVRRVDKIGSKKGGEMQFWTKDEY 176

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT---------- 229
            +F     +      AFE L ++G+RC +               ++  K+          
Sbjct: 177 LRFSEAVMDKPLSFHAFELLYWTGIRCGELLALTPSDFMLESSRLRINKSYQSLHGVDTV 236

Query: 230 ------GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
                  ++ T+ +P      +A     ++    +     +     +   +     +GV 
Sbjct: 237 TDPKTPKSVRTIVMPAFLRDEMAEFIEMRDDVAPDERLFAVTKHFLAHEMERGCKASGVK 296

Query: 284 K-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +   H +R    ++  + G +A  +    G + VD    Y  
Sbjct: 297 RIRIHDIRHSHVSLLIEMGFSALAIAERMGHEAVDITYRYAH 338


>gi|257422023|ref|ZP_05599013.1| predicted protein [Enterococcus faecalis X98]
 gi|257163847|gb|EEU93807.1| predicted protein [Enterococcus faecalis X98]
 gi|315157051|gb|EFU01068.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0043]
 gi|315157428|gb|EFU01445.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0312]
          Length = 378

 Score = 89.3 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 58/361 (16%), Positives = 119/361 (32%), Gaps = 50/361 (13%)

Query: 18  HGKIIYYFRKGHG---RRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR-KKPTTLKW 73
           +GK  Y+ R       +  R+     S    A   A+     K       + ++  +L+ 
Sbjct: 8   NGKFKYFERYKDPYTEKYRRVSVTLNSKSNQAKKQAMMELQDKINNRMEKKDQQKVSLEN 67

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG-DFDYRKITTKHIRSGVESRKHTPSS 132
           L++ + +     S+   S  ++      I      D   R   TK  +  +    H+   
Sbjct: 68  LLNSWWQQHQ-LSIRKTSVKAYGKILKYIFSNMNVDVLIRNTDTKFFQDFINDLPHSWEY 126

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVE--RPKRKTEGIR-----PWTKEDMQQFKSF 185
             +F + + + F +A     +  NP   V+  +P    E           ++++ Q  ++
Sbjct: 127 KKKFKSVLNMSFTYAQDMGMIDENPINRVKVVKPPLTKENFENIESKYLEEKEVYQLLNY 186

Query: 186 WSEG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------------ 229
           +          RLA EF+  +GLR  ++    +     N  +I    T            
Sbjct: 187 YYSTFQSVHHGRLA-EFMYLTGLRAGEAISLTINDYVKNEHAILVNGTLDYSNGYKNATK 245

Query: 230 ------GTIITVELPDGFMKLLAMTPIGKE--------TFFINNDKQKMNATQFSIWFKA 275
                  +   VEL +  +K++    + +E          F+    + +    F+   K 
Sbjct: 246 ELPKTLASFRKVELSNRAVKIIEELILEREIKFKEQTNYLFVGKTGKPIQVNSFNASLKK 305

Query: 276 KATKAGVNK-----SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRI 329
                G NK     S+H  R    ++ A+       +M   G    +   + YT    + 
Sbjct: 306 ANESLGKNKINKTISSHIFRHSHISLLAELNVPVKAIMERVGHVDTETTLKIYTHVTKKA 365

Query: 330 R 330
           +
Sbjct: 366 K 366


>gi|301062332|ref|ZP_07202995.1| site-specific recombinase, phage integrase family [delta
           proteobacterium NaphS2]
 gi|300443536|gb|EFK07638.1| site-specific recombinase, phage integrase family [delta
           proteobacterium NaphS2]
          Length = 389

 Score = 89.3 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 55/361 (15%), Positives = 109/361 (30%), Gaps = 37/361 (10%)

Query: 14  ERTRHGKIIYY---FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
           ++ + GK + Y   +R   G++ + P         A          + +  +       T
Sbjct: 29  DKAKSGKRLMYWISYRLPSGKQKQEPVGASIDDARAADGKKKILKKEGKLFDIRDDTKMT 88

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT- 129
              L S Y       +LA  S  + +   ++     G     KIT   + +    R    
Sbjct: 89  FNELTSWYLGLEKVKALA--SYHTIKISIEKFNAVFGGMIVAKITPADLENYQAKRAKAG 146

Query: 130 --PSSAIQFLTSMRVLFKWAVRQEYVA-----INPCLSVERPKRKTEGIRPWTKEDMQQF 182
             P++    +   + +   A     ++         +     K      R  T ++    
Sbjct: 147 KAPATIDHEIGKTKTMILKAFDNGKISGETLRTFKKIKKTLKKGADVRDRILTHDE---- 202

Query: 183 KSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ----KTGTIITVE 236
            S   E S   +        Y+G+R  +  +     +     +I  +    K     T+ 
Sbjct: 203 FSRLCENSTQHICGMLTMGYYTGMRRGEILKLTWDKVDMKNRTINLEAADTKDRERRTIP 262

Query: 237 LPDGFMKLLA--MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--------A 286
           + D   K+L      I  +  F+    + ++  +  +       KAG+            
Sbjct: 263 IYDELFKMLKNVTRHINDKHVFLF-RGKPVSDIRTGLV--KACKKAGITYGRFEKGGFIF 319

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETY-TKGADRIRLGIKNSRRISSVVDS 345
           H +R    T    AG     +MA  G  T +  + Y T   D  R  ++        V  
Sbjct: 320 HDLRHTFNTNMRKAGVPESVIMAITGHSTREMFDRYDTVDLDDTRQALQALEVFFRNVTQ 379

Query: 346 D 346
           +
Sbjct: 380 N 380


>gi|229162634|ref|ZP_04290594.1| Phage integrase [Bacillus cereus R309803]
 gi|228620897|gb|EEK77763.1| Phage integrase [Bacillus cereus R309803]
          Length = 387

 Score = 89.3 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 52/361 (14%), Positives = 118/361 (32%), Gaps = 56/361 (15%)

Query: 25  FRK---GHGRRIRLPYPHEST--------FIPAYMSALTGSTPKREYINSPR--KKPTTL 71
           FRK   G   RI+   P+           F     + +  +  ++  +N       P +L
Sbjct: 10  FRKVSNGWQYRIKFKDPYTHQYKEKTKRGFKTKKEAQIAATEEEQRILNGFEIDSVPVSL 69

Query: 72  KWLISEYRKSAHWGSLAVNS----RISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127
           K+ + ++       ++  N+    + + E +     +     D + +  ++  + +  + 
Sbjct: 70  KYFLEDWLTVYKENTVRKNTFILHKRNIEKHIIPYFKNINLKDLKPMMYQNFLNHLTDQG 129

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV---ERPKRKTEGIRPWTKEDMQQFKS 184
           ++  +      +M      A   + +  NPC       + ++K EG++     D+  F  
Sbjct: 130 YSKGTVKIIHRTMNNAMCKANSLKKIETNPCSDAVISNKNQKKEEGLKYMRTGDIPLFLK 189

Query: 185 FWSEGSQPRLAF-EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-------------- 229
              + +     F + L+ +G+R  ++       +     +I   KT              
Sbjct: 190 ASYQYNYIYYIFFKTLINTGMRKGEAAAIQWSDIDFKENTINITKTLDFQTKEGEDLFGD 249

Query: 230 ----GTIITVELPDGFMKLL---------------AMTPIGKETFFINNDKQKMNATQFS 270
                +  T+ +PD   K L                         F   D   +  +   
Sbjct: 250 TKTFSSRRTITIPDSLAKDLLNHKKWQNENKLVLQESYKHDLNLVFTKVDGSHLPKSTLF 309

Query: 271 IWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADR 328
                   KA +     HG+R   A +  ++GA    +    G K+++     Y+  +D+
Sbjct: 310 NALTRILKKAELPYLEIHGLRHTHAVLLLESGANLKYIQERLGHKSIEMTSNIYSHISDK 369

Query: 329 I 329
           I
Sbjct: 370 I 370


>gi|310828360|ref|YP_003960717.1| phage integrase [Eubacterium limosum KIST612]
 gi|308740094|gb|ADO37754.1| phage integrase [Eubacterium limosum KIST612]
          Length = 407

 Score = 89.3 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 55/389 (14%), Positives = 103/389 (26%), Gaps = 75/389 (19%)

Query: 1   MTPSLRLPPFVTKERTRHGKIIYY---FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPK 57
           M    ++P +       H  + YY    R   G+R+ L              A      K
Sbjct: 1   MARRRQIPKY---GTVVHNGVTYYRTRIRDAGGKRVALYGKTREELYDKVEEANRQIEDK 57

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISF-ESYFDQIIRKSGDFDYRKITT 116
                +P  K    KWL   Y +SAH   +   + + +     + I++  G      +T 
Sbjct: 58  IFRQKTPTVKEYAEKWL---YMQSAH---VRYTTMLDYTSKVKNYIVQPLGHMYMADVTQ 111

Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVE-RPKRKTEGIRPW 174
             I+  +        S    +  +     + A     +  NP   +  R     +   P 
Sbjct: 112 DDIKMALVPVSKKSESVYHSVVMLLKCIFYSAEDNHLIRENPTKRIPSRGGVPEKEKPPL 171

Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----------------- 217
           T E ++        G  P +     LY+GLR  +        +                 
Sbjct: 172 TDEQVEMLLDAIK-GLPPYVFVMLGLYAGLRREEILGLKWDCVFLDEEVPYLSVKRAWHT 230

Query: 218 --QNNIFSIKTQKTGTIITVELPDGFMKLLAMTP--IGKETFFINNDKQKMNATQFSIWF 273
                + + + +       + LPD   + L         E    N   + ++ TQF   +
Sbjct: 231 ERNRPVITEQLKTKAAKRDIPLPDCLTECLREAKEQSKSEFVVCNRGGEALSYTQFRRVW 290

Query: 274 K-------------AKATKAGVNK------------------------SAHGVRKFSATI 296
           +                    +                          + H +R    T 
Sbjct: 291 QYIVTRSTKERTYVRYVNGEKIKHTVTPVLGEKAKHNNTVVYTLDFQVTPHELRHTYITN 350

Query: 297 SADAGATAHELMATYGWKTVDQA-ETYTK 324
              A      +    G ++     + Y K
Sbjct: 351 LIAASVDPKTVQYLAGHESSKITMDIYAK 379


>gi|290474039|ref|YP_003466913.1| integrase [Xenorhabdus bovienii SS-2004]
 gi|289173346|emb|CBJ80123.1| Integrase [Xenorhabdus bovienii SS-2004]
          Length = 354

 Score = 89.3 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 50/313 (15%), Positives = 97/313 (30%), Gaps = 30/313 (9%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87
            +GRRIR  +  +   I      L  +  K       ++    L  LI  + + AH  +L
Sbjct: 20  RNGRRIRKQFTTKGEAIACERHILDETVEKPWLG--EKQDKRLLSELIDIWYR-AHGITL 76

Query: 88  AVNSRISFE-----SYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKH-TPSSAIQFLTSM 140
           +                D   + +  +  +     K +    +  K   PS+    L   
Sbjct: 77  SDGEHRKKRMFFACKEMDHPFVTEFDNKLFSIYREKRLNGYADKLKPVAPSTVNNELAYF 136

Query: 141 RVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL--AFE 197
           R +F    R   + A NP  ++       + +   + + +    +F ++     L    +
Sbjct: 137 RAMFNELHRLGEWKAGNPLKNIRAFNTGEKEMAFLSNQQIITLLNFCAKSRAKDLLIIVK 196

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI 257
             L +G R S++       +     +    K     TV +           P  K   F 
Sbjct: 197 IALSTGARWSEAAGLTDSQITPYKITFTKTKGKRNRTVPITKEL---YDEIPKRKGKLF- 252

Query: 258 NNDKQKMNATQFSIWFKAKATKAGV----NKSAHGVRKFSATISADAGATAHELMATYGW 313
                    +     F+    +AG+    ++S+H +R   A+    +G     L    G 
Sbjct: 253 ---------SSCYNAFRTAVKQAGIELPSHQSSHVMRHTFASHFMMSGGNIIVLQRILGH 303

Query: 314 KTVDQAETYTKGA 326
             +     Y   A
Sbjct: 304 TDIKMTMRYAHFA 316


>gi|227827993|ref|YP_002829773.1| integrase family protein [Sulfolobus islandicus M.14.25]
 gi|229585262|ref|YP_002843764.1| integrase family protein [Sulfolobus islandicus M.16.27]
 gi|238620221|ref|YP_002915047.1| integrase family protein [Sulfolobus islandicus M.16.4]
 gi|227459789|gb|ACP38475.1| integrase family protein [Sulfolobus islandicus M.14.25]
 gi|228020312|gb|ACP55719.1| integrase family protein [Sulfolobus islandicus M.16.27]
 gi|238381291|gb|ACR42379.1| integrase family protein [Sulfolobus islandicus M.16.4]
          Length = 291

 Score = 89.3 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 38/250 (15%), Positives = 82/250 (32%), Gaps = 33/250 (13%)

Query: 83  HWGSLAVN--SRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSM 140
            + +      +      +   ++ + G      +  +  +S          +   ++ ++
Sbjct: 44  DFINKDPRKVTSEDLNKWISNLLNREGKVKGDDVEKRRAKSV---------TIRYYIIAV 94

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200
           R   KW         N  +    PK + + ++   +  +Q+  +     ++ +L    LL
Sbjct: 95  RRFLKWL--------NVSVKPPIPKVRRKEVKALDESQIQKVLNTCKR-TKDKLIIRLLL 145

Query: 201 YSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDG----FMKLLAMTPIGKET 254
            +GLR ++     V+ +   NN+  ++  K G    V   D       K +    + ++ 
Sbjct: 146 DTGLRANELLSVLVKDVDLENNMIRVRNTKNGEERVVFFTDETKQLLRKYMKGKKLDEKL 205

Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWK 314
           F I                K    K  +    H +R   AT+S   G     L    G K
Sbjct: 206 FDIT-------YDALYRKLKRLGNKVEIELRPHILRHTFATLSLKRGINVITLQKLLGHK 258

Query: 315 TVDQAETYTK 324
            +   + YT 
Sbjct: 259 DIKTTQIYTH 268


>gi|91210294|ref|YP_540280.1| prophage lambda integrase [Escherichia coli UTI89]
 gi|117623322|ref|YP_852235.1| prophage lambda integrase [Escherichia coli APEC O1]
 gi|218558019|ref|YP_002390932.1| phage integrase [Escherichia coli S88]
 gi|237706877|ref|ZP_04537358.1| prophage lambda integrase [Escherichia sp. 3_2_53FAA]
 gi|306814013|ref|ZP_07448186.1| phage integrase [Escherichia coli NC101]
 gi|331646397|ref|ZP_08347500.1| integrase [Escherichia coli M605]
 gi|91071868|gb|ABE06749.1| prophage lambda integrase [Escherichia coli UTI89]
 gi|115512446|gb|ABJ00521.1| prophage lambda integrase [Escherichia coli APEC O1]
 gi|218364788|emb|CAR02478.1| phage integrase [Escherichia coli S88]
 gi|222032889|emb|CAP75629.1| integrase of prophageCP-933X(Intergra se) [Escherichia coli LF82]
 gi|226898087|gb|EEH84346.1| prophage lambda integrase [Escherichia sp. 3_2_53FAA]
 gi|281178247|dbj|BAI54577.1| phage integrase [Escherichia coli SE15]
 gi|294489975|gb|ADE88731.1| site-specific recombinase, phage integrase family [Escherichia coli
           IHE3034]
 gi|305852650|gb|EFM53098.1| phage integrase [Escherichia coli NC101]
 gi|307627391|gb|ADN71695.1| phage integrase [Escherichia coli UM146]
 gi|312945699|gb|ADR26526.1| phage integrase [Escherichia coli O83:H1 str. NRG 857C]
 gi|315287466|gb|EFU46877.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 110-3]
 gi|323953176|gb|EGB49042.1| bacteriophage lambda integrase domain-containing protein
           [Escherichia coli H252]
 gi|323957964|gb|EGB53676.1| bacteriophage lambda integrase domain-containing protein
           [Escherichia coli H263]
 gi|324005344|gb|EGB74563.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 57-2]
 gi|330910951|gb|EGH39461.1| prophage lambda integrase [Escherichia coli AA86]
 gi|331045149|gb|EGI17276.1| integrase [Escherichia coli M605]
          Length = 380

 Score = 89.3 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 59/358 (16%), Positives = 110/358 (30%), Gaps = 50/358 (13%)

Query: 9   PFVTKERT-RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTG----------STPK 57
           P +  +   R GK+ + ++     R       E+        A T           S  +
Sbjct: 13  PNLYCKLDKRTGKVYWQYKHPLSGRFHSLGTDENEAKQVATEANTIIAEQRTRQILSVNE 72

Query: 58  REYINSPRKKPTTLKWLISEYRKSAH----WGSLAVNSRISFESYFDQIIRKSGDFDYRK 113
           R      R+   T+   + +Y            L  NS               G    + 
Sbjct: 73  RLERMKGRRSDITVTEWLDKYISIQEDRLQHNELRPNSYRQKGKPIRLFREHCGMQHLKD 132

Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMRVL----FKWAVRQEYVA--INPCLSVERPKRK 167
           IT   I   +++ K       +    +R++    FK A    +V    NP  + ++P+ +
Sbjct: 133 ITALDIAEIIDAVKAEGH--NRMAQVVRMVLIDVFKEAQHAGHVPPGFNPAQATKQPRNR 190

Query: 168 TEGIRPWTKEDMQQ-FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226
               R  +  + Q  F S        +      L +G R  D C      + +++  I  
Sbjct: 191 VNRQR-LSLPEWQAIFDSVSRRQPYLKCGMLLALVTGQRLGDICNLKFSDIWDDMLHITQ 249

Query: 227 QKTGTIITVELP---DGFMKLLAMTPIGKETFFIN-------------NDKQKMNATQFS 270
           +KTG+ + + L    D     L           ++             N   +++A   +
Sbjct: 250 EKTGSKLAIPLNLKCDALNITLREVISQCRDAVVSKYLVHYRHTTSQANRGDQVSANTLT 309

Query: 271 IWFKAKATKAGVNK------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
             FK    K G+        + H  R  S  +  + G    +L    G K+    + Y
Sbjct: 310 TAFKKAREKCGIKWEQGTAPTFHEQRSLSERLYREQGLDTQKL---LGHKSRKMTDRY 364


>gi|300872289|gb|ADK38972.1| IntI4 [Vibrio sp. V90(2010)]
          Length = 290

 Score = 89.3 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 42/289 (14%), Positives = 87/289 (30%), Gaps = 57/289 (19%)

Query: 93  ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEY 152
            ++  +  + I          +  K +   +         A +  +       +  ++  
Sbjct: 1   RAYLHWITRYIHFHNKKHPSLMGDKEVEEFLTYLAVQGKVATKTQSLALNSLSFLYKE-- 58

Query: 153 VAINP-CLSVE--RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDS 209
           +   P  L +   R + + +     T++++++         + +L  + L  SGLR  + 
Sbjct: 59  ILKTPLSLEIRFQRSQLERKLPVVLTRDEIRRLLEIVDP--KHQLPIKLLYGSGLRLMEC 116

Query: 210 CRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLAMTPIGKETFFINN-------- 259
            R  VQ +  +  +I+    K G   TV L       L       + ++  +        
Sbjct: 117 MRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHLKEQIALAKRYYDRDLHQKNYGG 176

Query: 260 --------------------------------------DKQKMNATQFSIWFKAKATKAG 281
                                                  +  MN T+     +  A +AG
Sbjct: 177 VWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVMRRHHMNETELQKAVRRSAQEAG 236

Query: 282 VNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           + K+   H +R   AT   + GA    +    G   V   + YT   DR
Sbjct: 237 IEKTVTCHTLRHSFATHLLEVGADIRTVQELLGHTDVKTTQIYTHVLDR 285


>gi|311110137|ref|ZP_07711534.1| site-specific recombinase, phage integrase family [Lactobacillus
           gasseri MV-22]
 gi|311065291|gb|EFQ45631.1| site-specific recombinase, phage integrase family [Lactobacillus
           gasseri MV-22]
          Length = 390

 Score = 89.3 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 49/317 (15%), Positives = 117/317 (36%), Gaps = 51/317 (16%)

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT- 116
           +E +N    KP T+  LI + + +     LA+ +R S+ S  D I +   D     + T 
Sbjct: 58  QEKLNIQSIKPITMDKLIDKLKNNLDKQGLAIKTRNSYFSTLDIISKDFKDKLVASVNTT 117

Query: 117 ---KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE------RPKRK 167
               ++   +  RK +  +   +L  ++ +F++A++  Y+  +P L ++      R K++
Sbjct: 118 ELNVYLNDLLYERKLSNGTIKIYLLQLKKIFEYAIQFGYIKKDPTLKIKINYKNERAKKQ 177

Query: 168 TEGIRPW--TKEDMQQFKSF--WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL------ 217
           +     W  T +++    ++    +       F++L  +G+R  ++    + ++      
Sbjct: 178 SRV-ENWYLTDDELNTVLTYCLHKKREDYYHLFKWLYLTGMRVGEATALLINNVFQDPET 236

Query: 218 -------------QNNIFSIKTQKTGTI---ITVELPDGFMKLL--AMTPIGKETFF--- 256
                              ++ + T T     T+ LPD  +++         K  +    
Sbjct: 237 KLWYATISGTLVHVKGKGEVRQEFTKTASSHRTIALPDEAVEIYKECSKDRNKNDYLFRN 296

Query: 257 ------INNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELM 308
                 ++N     + +  S + +    K    K  ++H  R    +  A+ G     + 
Sbjct: 297 KFYGSQLSNLNNPFSVSTISHFLRVFVNKKKWKKQITSHIFRHTHVSKLAEEGYPLSLIT 356

Query: 309 ATYGWKTVD-QAETYTK 324
              G  + +   + Y  
Sbjct: 357 DRVGHSSSEITRKIYLH 373


>gi|254252478|ref|ZP_04945796.1| Integrase [Burkholderia dolosa AUO158]
 gi|124895087|gb|EAY68967.1| Integrase [Burkholderia dolosa AUO158]
          Length = 364

 Score = 89.3 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 49/258 (18%), Positives = 89/258 (34%), Gaps = 25/258 (9%)

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI-RSGVESRK 127
            T+  L  +++++  W   +  +R  ++     ++   GD     I   H+ R     R 
Sbjct: 82  GTIGRLWEQFQETPGWQRYSQYTRNDYKQCSGPLLETFGDMRAADIDATHVSRYLRIERA 141

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS-FW 186
             P  A + +  +  L   A+ +     NPC  V R + +     P   +D Q F +   
Sbjct: 142 AAPVRANREVALLSNLIGLAIDRGEAKHNPCREVRRNEEQPRTEAP-EPKDFQAFAAWVA 200

Query: 187 SEGSQ---PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-------QKTGTII-TV 235
           S G Q     +A E+   +G R  +        +      I+        +K G +I  +
Sbjct: 201 SLGGQKAVIGMAAEYAALAGNRKVEFLDLSWPQIDETAGVIRVKRAKQRGKKRGEVIEHI 260

Query: 236 ELPDGFMKLL----AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA------GVNKS 285
           E+     +L+    A         F N      +   F   +     KA      G   +
Sbjct: 261 EITPALSELIARLRAARKDDCLYVFSNRYATHYSPAGFKTEWSKLMNKALELKKIGRRFT 320

Query: 286 AHGVRKFSATI-SADAGA 302
            H +R +  T   A+ GA
Sbjct: 321 FHDLRAYYVTRHKAERGA 338


>gi|17158647|ref|NP_478158.1| integrase-recombinase protein [Nostoc sp. PCC 7120]
 gi|17134596|dbj|BAB77154.1| integrase-recombinase protein [Nostoc sp. PCC 7120]
          Length = 360

 Score = 89.3 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 50/325 (15%), Positives = 108/325 (33%), Gaps = 51/325 (15%)

Query: 53  GSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESY----FDQIIRKSGD 108
                 +Y    R+K  + + LI  +  S      +  +R ++        D +  + G 
Sbjct: 24  ARVALVDYYFPNRQKINSTQQLIELWVHSVTIK--SDQTRRAYRQIGYELVDYMHSRFGI 81

Query: 109 FDYRKITTKHIRSGVESRKH-------------TPSSAIQFLTSMRVLFKWAVRQ--EYV 153
            D R +T  H+ + +   K              + ++A ++  +++ L++W  R    Y 
Sbjct: 82  SDLRMVTLFHLHAYLTWLKDEKPVRGKKNTYGISKNTAAKYTAAIKSLWEWGTRASIGYF 141

Query: 154 AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR-------LAFEFLLYSGLRC 206
           AI+    +          R  ++ ++ + +                 L F  + YSG+R 
Sbjct: 142 AIDLGKDLSIQWDDKLAERILSEREIAKLEKAAMAVDLQHNTNKMHWLLFTLVFYSGVRA 201

Query: 207 SDSCR-------------AGVQHLQNN---IFSIKTQKTGTIITVELPDGFMKLL---AM 247
            +  R                +  + +   +    T K     T+ L      +L     
Sbjct: 202 GEIARQTSDYGKRVITPGLFWRQFREDGDCLLLTVTGKRNKTRTISLDPETSAVLLDYRG 261

Query: 248 TPIGKETFFIN----NDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGAT 303
                +  F +    +  + ++     +  +  +  AG+  SAH +R   AT++   GA+
Sbjct: 262 DASNDQPVFPSPSRRDRGKPLSDRGLRLMMEEISACAGIKFSAHFLRHTHATLAKKNGAS 321

Query: 304 AHELMATYGWKTVDQAETYTKGADR 328
             +L A  G  +      Y     R
Sbjct: 322 DFDLQADLGHASPATTAKYIHHVGR 346


>gi|237746537|ref|ZP_04577017.1| integrase/recombinase [Oxalobacter formigenes HOxBLS]
 gi|229377888|gb|EEO27979.1| integrase/recombinase [Oxalobacter formigenes HOxBLS]
          Length = 308

 Score = 89.3 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 51/274 (18%), Positives = 91/274 (33%), Gaps = 28/274 (10%)

Query: 81  SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP--SSAIQFLT 138
           S+ +   +  +  ++ +                   +HI S  E  K T   ++A  +L 
Sbjct: 3   SSEF---SPTTIRTYRTALASFFDWMALCGTDFPAREHIVSWKEYLKQTRSLATAQTYLA 59

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-PWTKEDMQQFKSFWSEG---SQPRL 194
           ++R+ FKW  R      +   SV+  K      R       +         G    +   
Sbjct: 60  AVRLFFKWTGRYGKYP-DIASSVKGVKVGRSPKRDFLAPHQVLSVLDETKSGNSHLRDYS 118

Query: 195 AFEFLLYSGLRCSDSCRAGVQ---HLQNNIFSIKTQKT--GTIITVELPDGFMKLLAM-- 247
               ++  GLR S+  +A V+   H+          K   G    V +P      +    
Sbjct: 119 MILLMVTCGLRVSEVAQANVEDLNHVGGEPVLYIHGKGRDGKTDFVNVPKKVASAIRRYL 178

Query: 248 ----TPIGKETFFI----NNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATI 296
               +P G    F     NN   +M +   S   K     AG +    +AH +R  + T+
Sbjct: 179 LSRGSPAGPSPLFASVSRNNGGGRMTSHSVSRIVKTMLKSAGFDSRRLTAHSLRHTAVTV 238

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
           S  AGAT  ++        +   + Y    ++ R
Sbjct: 239 SLQAGATLQQVQQFARHSLIMTTQIYAHNLEQCR 272


>gi|310657614|ref|YP_003935335.1| phage integrase [Clostridium sticklandii DSM 519]
 gi|308824392|emb|CBH20430.1| Phage integrase [Clostridium sticklandii]
          Length = 376

 Score = 89.3 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 48/308 (15%), Positives = 101/308 (32%), Gaps = 41/308 (13%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDF 109
           L     +            T K     Y++      +  ++  + E   + +I+   G  
Sbjct: 39  LAQEWEQEFLNEQSGTLEMTFKEFFEVYKRDKK-PRIREHTWKTKEYIVNTKILPYFGKI 97

Query: 110 ---DYRKITTKHIRSGVESRKH------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
              + + IT  H ++ +  ++       +P+        +  L   A +   +  N    
Sbjct: 98  KMNEIKSITIIHWQNELMEKRDDKGQKYSPTYLRTIHAQLSSLLNHACKYYNLKTNAARD 157

Query: 161 VE-RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ- 218
           V    +++   +  WT+E+ ++F S   +  Q   AFE L + GLR  +      +    
Sbjct: 158 VGSMGEKEANEMLFWTQEEYEKFISAIKDKPQSFYAFEILYWCGLRIGELFALTKEKFDF 217

Query: 219 --------------NNIFSIKTQKTGTII-TVELPDGFMKLLAMTPIG------KETFFI 257
                         N    I   KT   I T+ +P+   + +     G      K+  F 
Sbjct: 218 ENNIVKVDQSVQKLNGEIVITPPKTKKSIRTIVMPEFLSREIQEYLSGFYKLKDKDLIF- 276

Query: 258 NNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTV 316
                 ++ +           KA V +   H +R    ++  + G +A  +    G +++
Sbjct: 277 -----PISKSYLHHEMDRGCKKASVKRIRVHDLRHSHVSLLIELGYSAIAIADRVGHESI 331

Query: 317 DQAETYTK 324
           D    Y  
Sbjct: 332 DITYRYAH 339


>gi|327404978|ref|YP_004345816.1| integrase family protein [Fluviicola taffensis DSM 16823]
 gi|327320486|gb|AEA44978.1| integrase family protein [Fluviicola taffensis DSM 16823]
          Length = 419

 Score = 89.3 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 41/265 (15%), Positives = 96/265 (36%), Gaps = 26/265 (9%)

Query: 88  AVNSRISFE----SYFDQIIRKS--GDFDYRKITTKHIRSGVESR----KHTPSSAIQFL 137
           +  + + ++         + RK    D    ++    I           +   ++A +++
Sbjct: 134 SPKTLMRYQITKNKVVAYMERKFKLSDMPLHELRLAFITEFEHHLLTVDRIQSNTAHKYI 193

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA-- 195
            +++ +   AV  +++  NP    +     T+      +++++  +      S  RL   
Sbjct: 194 KNLKKIMNMAVGLDWIPSNPFNLFKCSYVSTD-REILNQDELEVLR--LKPISVQRLVEV 250

Query: 196 ---FEFLLYSGLRCSDSCRAGVQHL-----QNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
              F F  Y+G   SD  +     +     +    S   QKTGT  +V L    ++++  
Sbjct: 251 RDVFVFCCYTGFAYSDVYQFQHDAVIVGLDKEYWLSTNRQKTGTRESVPLLPIPLQIIEK 310

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSAT-ISADAGATA 304
               +     N      +  +++ + K  A   G+ K  + H  R   AT ++   G   
Sbjct: 311 YKNDEYCIKSNKLLPVNSNQRYNSYLKELADICGIKKHLTTHIARHTFATTVTLANGVPI 370

Query: 305 HELMATYGWKTVDQAETYTKGADRI 329
             + +  G K++   + Y K  ++ 
Sbjct: 371 ETVSSMLGHKSIRTTQVYAKVVEKK 395


>gi|306819226|ref|ZP_07452937.1| possible integrase/recombinase XerD [Mobiluncus mulieris ATCC
           35239]
 gi|307700216|ref|ZP_07637257.1| site-specific tyrosine recombinase XerC [Mobiluncus mulieris
           FB024-16]
 gi|304648008|gb|EFM45322.1| possible integrase/recombinase XerD [Mobiluncus mulieris ATCC
           35239]
 gi|307614598|gb|EFN93826.1| site-specific tyrosine recombinase XerC [Mobiluncus mulieris
           FB024-16]
          Length = 361

 Score = 89.3 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 35/259 (13%), Positives = 78/259 (30%), Gaps = 49/259 (18%)

Query: 115 TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
             +     +  R  + ++  + + S R    WA++  +++ +  L +  PK         
Sbjct: 86  RIRAWLGDMSRRGASRATLARRVASFRTFSAWALKHGFMSCDSGLRLHSPKPDNSLPTVL 145

Query: 175 TKEDMQQFKSFW-----------------------------------SEGSQPRLAFEFL 199
           ++  + +  +                                       G +     E L
Sbjct: 146 SEAQVARLLNTARLQAYSLGVHQKASKSQAEIPDSIPGDSAVPNRVNPVGLRDWALLELL 205

Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE------------LPDGFMKLLA 246
             +G+R S+     ++ +  +  +I+   K G                  L  G   L++
Sbjct: 206 YATGVRVSELTGLRLRDISRSEATIRVCGKGGKERVAPYGIPAGIALDEYLEQGRPVLVS 265

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAH 305
                 E  F+     +++              AGV +   HG+R  +AT   + GA   
Sbjct: 266 PDRDAGEWVFLGVKGGRLDTRLVRGMLHRMTAVAGVPDLGPHGLRHTAATHLLNGGADLR 325

Query: 306 ELMATYGWKTVDQAETYTK 324
            +    G  ++   + YT 
Sbjct: 326 CVQEILGHASLGTTQRYTH 344


>gi|300726814|ref|ZP_07060244.1| integrase [Prevotella bryantii B14]
 gi|299775927|gb|EFI72507.1| integrase [Prevotella bryantii B14]
          Length = 404

 Score = 89.3 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 30/198 (15%), Positives = 62/198 (31%), Gaps = 17/198 (8%)

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-----SEGSQPRL 194
           ++ + + A R+           +  K   +  +   +  + + K         +    R 
Sbjct: 187 LKTVCRLAYREGLADTLLFDKAKISKGDKKLPKALDRAALDKLKELCFDDLEEDLETARD 246

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVELPDGFMKLLAMTP 249
            F F  Y+G    D       H   +           QKTG +  ++L    ++L+A   
Sbjct: 247 IFLFACYTGAAYCDLMELNRSHFVRDDEGSLWLKFNRQKTGVLCRIKLLPEAVRLIAKYR 306

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS-ADAGATAHE 306
             +    +      +    +    K+   +AG+    + H  R   AT+   + G     
Sbjct: 307 SDERETLL----PYIKYKSYQTCLKSLRLRAGISFPFTTHTARHTFATLITLEQGVPIET 362

Query: 307 LMATYGWKTVDQAETYTK 324
           +    G   +   E Y K
Sbjct: 363 VSKMLGHSNISMTERYAK 380


>gi|187734150|ref|YP_001880474.1| integrase [Shigella boydii CDC 3083-94]
 gi|187431142|gb|ACD10416.1| integrase [Shigella boydii CDC 3083-94]
          Length = 375

 Score = 89.3 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 49/301 (16%), Positives = 98/301 (32%), Gaps = 12/301 (3%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRK-SAHWGS 86
             G+RIR  +  +S  +      L          NS  ++P ++  LI  + K       
Sbjct: 69  RKGKRIRKKFKTKSDAVLYERWVLAQQHNNEWKGNSIDRRPLSV--LIDLWWKYHGQLMK 126

Query: 87  LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKW 146
              N+R+      + +           + T+ +R     +   PS+  + + ++  +F  
Sbjct: 127 SGHNTRLKLLRLSEAMDDPCVHKLNTTMLTE-LRVSRIEQGIQPSTINREIGALSAMFTA 185

Query: 147 AVRQEY-VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLR 205
            +   + +  NP   ++  K K   +   +K +  Q     +E    RLA E LL +G R
Sbjct: 186 LISSGHFLNDNPVQGLKGMKVKEREMGYLSKSECVQLLDALAENPDERLAVEILLSTGAR 245

Query: 206 CSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN 265
             +      + + +   +    K     TV + +   +   +   G +  F   D     
Sbjct: 246 WGEVAALEQRRVLHCRITFSKTKNSKNRTVPISESLFE--KIKKRGGKLVFPTLD----- 298

Query: 266 ATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
            +      K  A      ++ H +    A+     G     L    G   +     Y   
Sbjct: 299 YSLVRDVIKTVAPDVPDGQAVHALHHTFASHFMMNGGNILTLQKILGHAKIQTTMIYAHL 358

Query: 326 A 326
           A
Sbjct: 359 A 359


>gi|227830730|ref|YP_002832510.1| integrase [Sulfolobus islandicus L.S.2.15]
 gi|229581710|ref|YP_002840109.1| integrase family protein [Sulfolobus islandicus Y.N.15.51]
 gi|284998243|ref|YP_003420011.1| phage integrase family protein [Sulfolobus islandicus L.D.8.5]
 gi|227457178|gb|ACP35865.1| integrase family protein [Sulfolobus islandicus L.S.2.15]
 gi|228012426|gb|ACP48187.1| integrase family protein [Sulfolobus islandicus Y.N.15.51]
 gi|284446139|gb|ADB87641.1| phage integrase family protein [Sulfolobus islandicus L.D.8.5]
          Length = 291

 Score = 89.3 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 38/250 (15%), Positives = 83/250 (33%), Gaps = 33/250 (13%)

Query: 83  HWGSLAVN--SRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSM 140
            + +      +      +   ++ + G     ++  +  +S          +   ++ ++
Sbjct: 44  DFINKDPRKVTSEDLNKWISNLLNREGKVKGDEVEKRRAKSV---------TIRYYIIAV 94

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200
           R   KW         N  +    PK + + ++   +  +Q+  +     ++ +L    LL
Sbjct: 95  RRFLKWL--------NVSVKPPIPKVRRKEVKALDESQIQKVLNTCKR-TKDKLIIRLLL 145

Query: 201 YSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDG----FMKLLAMTPIGKET 254
            +GLR ++     V+ +   NN+  ++  K G    V   D       K +    + ++ 
Sbjct: 146 DTGLRANELLSVLVKDVDLENNMIRVRNTKNGEERVVFFTDETKQLLRKYMKGKKLDEKL 205

Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWK 314
           F I                K    K  +    H +R   AT+S   G     L    G K
Sbjct: 206 FDIT-------YDALYRKLKRLGNKVEIELRPHILRHTFATLSLKRGINVITLQKLLGHK 258

Query: 315 TVDQAETYTK 324
            +   + YT 
Sbjct: 259 DIKTTQIYTH 268


>gi|56414549|ref|YP_151624.1| integrase [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. ATCC 9150]
 gi|197363479|ref|YP_002143116.1| integrase [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. AKU_12601]
 gi|56128806|gb|AAV78312.1| integrase [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. ATCC 9150]
 gi|197094956|emb|CAR60493.1| integrase [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. AKU_12601]
          Length = 387

 Score = 89.3 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 47/252 (18%), Positives = 89/252 (35%), Gaps = 40/252 (15%)

Query: 97  SYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS---AIQFLTSMRVLFKWAVRQEYV 153
              D+  RK+G                   K  P++       L+ ++ L + A  +E+ 
Sbjct: 120 KLMDEACRKNGKQPPV-------------FKPKPAALATKATHLSFIKALLR-AAEREWK 165

Query: 154 AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG 213
            ++    ++ P+ K + IR     + ++      E  +     EF L +GLR S+     
Sbjct: 166 MLDKAPIIKVPQPKNKRIRWLEPHEAKRLIDECPEPLKS--VVEFALSTGLRRSNIINLE 223

Query: 214 VQHLQNN----IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK-------- 261
            Q +           +  K+   I V L D   ++L    IG    ++   K        
Sbjct: 224 WQQIDMQRKVAWIHPEQSKSNQAIGVALNDTACRVLKKQ-IGNHHKWVFVYKESSTKPDG 282

Query: 262 ------QKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWK 314
                 +KM     + W ++   +AG+ +   H +R   A+    AG     L    GW+
Sbjct: 283 TKSPVVRKMRYDANTAW-RSALKRAGIEDFRFHDLRHTWASWLVQAGVPISVLQEMGGWE 341

Query: 315 TVDQAETYTKGA 326
           +++    Y   A
Sbjct: 342 SIEMVRRYAHLA 353


>gi|186681346|ref|YP_001864542.1| phage integrase family protein [Nostoc punctiforme PCC 73102]
 gi|186686687|ref|YP_001869881.1| phage integrase family protein [Nostoc punctiforme PCC 73102]
 gi|186686754|ref|YP_001869947.1| phage integrase family protein [Nostoc punctiforme PCC 73102]
 gi|186687046|ref|YP_001870435.1| site-specific recombinase XerD-like protein [Nostoc punctiforme PCC
           73102]
 gi|186687121|ref|YP_001870264.1| phage integrase family protein [Nostoc punctiforme PCC 73102]
 gi|186463798|gb|ACC79599.1| phage integrase family protein [Nostoc punctiforme PCC 73102]
 gi|186469106|gb|ACC84906.1| phage integrase family protein [Nostoc punctiforme PCC 73102]
 gi|186469424|gb|ACC85223.1| phage integrase family protein [Nostoc punctiforme PCC 73102]
 gi|186469572|gb|ACC85370.1| phage integrase family protein [Nostoc punctiforme PCC 73102]
 gi|186469670|gb|ACC85467.1| Site-specific recombinase XerD-like protein [Nostoc punctiforme PCC
           73102]
          Length = 304

 Score = 89.3 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 43/288 (14%), Positives = 96/288 (33%), Gaps = 30/288 (10%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
           K   TL  + +E+ +      LA ++R ++E     +++K G +    I+ + +   + +
Sbjct: 2   KSAVTLATVTTEFLERP---GLAPSTRETYELTLGLLLQKYGSWSIEIISKQTLVEYLNN 58

Query: 126 RKHTPSSAIQFLTSM-RVLFKWAVRQEYVAINPCLSVER--PKRKTEGIRP------WTK 176
             H   +      ++ + L  +AV Q Y+  NP   +++  P+R+    +        T+
Sbjct: 59  LSHLKYTTHHKHQAILQSLLNFAVEQGYIKSNPIRGLKQRLPEREKGEHKSDETIRYLTQ 118

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITV 235
             +    S   +  +       L  +G R  +     +  +       +   K       
Sbjct: 119 SQLNILYSAVKDDLRLSTIVHLLHRTGCRIGELLALNIDSVDIKNQKFQVLGKGNKQRWC 178

Query: 236 ELPDGFMKLLA---MTPIGKETFFINNDKQKMNAT-------QFSIWFKAKATK----AG 281
              D    +LA        + T  +   +  +              +++    K     G
Sbjct: 179 FYSDDAASMLAKYLKYSRHQNTNALFTAQHPVTRKVSRISYHTLHDYWRETTNKYPHLQG 238

Query: 282 VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           V    H +R   AT       +  EL +  G +++     Y K   + 
Sbjct: 239 V--RIHDLRHTFATE-RVGLISIEELCSLMGHESIQTTLRYAKVTSQK 283


>gi|306821127|ref|ZP_07454743.1| integrase XerD [Eubacterium yurii subsp. margaretiae ATCC 43715]
 gi|304550820|gb|EFM38795.1| integrase XerD [Eubacterium yurii subsp. margaretiae ATCC 43715]
          Length = 329

 Score = 89.3 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 32/248 (12%), Positives = 84/248 (33%), Gaps = 35/248 (14%)

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS---VE-RPKRKTEGIRPWTKED 178
           V  ++++  S  +    +++  ++    E +   P      ++ + K  ++       E+
Sbjct: 80  VADKQNSAVSIKRKKYVLKLFLEYLFEMEILEKTPIPKESVIKSKIKNNSKIPTYLEIEE 139

Query: 179 MQQF----KSFWS---EGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQ 227
           +Q+     +  +      S+        L++GLR S+      + +    + +  ++  +
Sbjct: 140 IQKINQSIRDLYDDEFIRSRNFFIINLFLHTGLRISELVSLDFKDMEKTKKTDYLTVIGK 199

Query: 228 KTGTIITVELP-DGFMKLL--------------AMTPIGKETFFINNDKQKMNATQFSIW 272
                I + +  D   K L                     +  FI+    ++      + 
Sbjct: 200 GNKERI-IPINVDELSKELGDEDNLIKVYLDDRKFIKSNTDALFISKKGGRLTQRYIQME 258

Query: 273 FKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
            K     + ++K  + H +R   AT     GA    +    G  ++   + YT   D+  
Sbjct: 259 LKKIIAYSNIDKRITPHKLRHTFATHFLKNGANLRIVQEILGHSSISTTQIYTHS-DKQD 317

Query: 331 LGIKNSRR 338
           L +   ++
Sbjct: 318 L-VNAMKK 324


>gi|167772512|ref|ZP_02444565.1| hypothetical protein ANACOL_03890 [Anaerotruncus colihominis DSM
           17241]
 gi|167665615|gb|EDS09745.1| hypothetical protein ANACOL_03890 [Anaerotruncus colihominis DSM
           17241]
          Length = 305

 Score = 89.3 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 33/261 (12%), Positives = 75/261 (28%), Gaps = 19/261 (7%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           L+ ++         + ++   +      + R        K      +  +    +  +S 
Sbjct: 34  LLRQFAAYLRDQEKSCSTIAQYNRGLAALHRFLQGAPVTKHALIAWKEHLMRH-YAAASV 92

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI----RPWTKEDMQQFKSFWSEG 189
              L ++     +     +        V+  K + E      +  ++E+  +      + 
Sbjct: 93  NAMLAAVNGFLSFC---GWSD----CRVKPLKIQRELFCREEQELSREEYLRLVRAAVQS 145

Query: 190 SQPRLAFEF--LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE--LPDGFMKLL 245
              RL+     +  +G+R S+      + ++     ++ +     I +   L       L
Sbjct: 146 GNERLSLVLQTICSTGIRVSELLFITAEAVRGGRAVVRCKGKTRYILLPERLRRALSAYL 205

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGA 302
           A         FI    + ++ +      KA   +AGV       H +R   A        
Sbjct: 206 AKQKRAAGPVFITRTGKPLDRSNIWRDMKALCKRAGVKAGKVFPHNLRHLFARTFYSLEK 265

Query: 303 TAHELMATYGWKTVDQAETYT 323
               L    G   V     YT
Sbjct: 266 DLSRLADILGHTNVATTRIYT 286


>gi|120610417|ref|YP_970095.1| phage integrase family protein [Acidovorax citrulli AAC00-1]
 gi|120588881|gb|ABM32321.1| phage integrase family protein [Acidovorax citrulli AAC00-1]
          Length = 356

 Score = 89.3 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 47/306 (15%), Positives = 95/306 (31%), Gaps = 40/306 (13%)

Query: 21  IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRK 80
           + Y +     R I L             +AL                  TL+W+   ++ 
Sbjct: 28  VTYRYHPVGKRPINLGTDM--------AAALRKVLDMNGQPGGGPDPTGTLRWVWESFKA 79

Query: 81  -SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE-SRKHTPSSAIQFLT 138
            S  W   A  +R  +E  + Q+  + G     +ITT  +   +   R   P  A    +
Sbjct: 80  NSPRWKKYAQTTRDDYEMAWKQLDDRLGHMHVGEITTAIVARYIHVERADAPRRADIEKS 139

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR----L 194
            +  LF  A+     A+NP   VE    ++  +       + +F ++  E +  R    +
Sbjct: 140 LLSRLFGHAIILGLCAVNPTTGVEPHGSESRTVAV-NPAVLGRFLAWLEEQTPQRRIIGM 198

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK------TQKTGTII--TVELPDGFMKLLA 246
           A E+   +G R  +        +      ++        K    +   + +     +L+ 
Sbjct: 199 AAEYASLAGNRKVEFLPLRWTQIDEVAGEVRSPRAKQRGKMRGEVIEVIRITPNLQRLID 258

Query: 247 MTP-------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---------SAHGVR 290
                     +     F   D     A  F   +  +     + +         + H +R
Sbjct: 259 RLKALRAQRGVDCLYVFPTRDNNAYTARGFKTLW-QRCVLLAIEQGVILKEDRFTFHDLR 317

Query: 291 KFSATI 296
            + AT+
Sbjct: 318 AYYATM 323


>gi|328957208|ref|YP_004374594.1| putative phage integrase [Carnobacterium sp. 17-4]
 gi|328673532|gb|AEB29578.1| putative phage integrase [Carnobacterium sp. 17-4]
          Length = 382

 Score = 89.3 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 52/312 (16%), Positives = 103/312 (33%), Gaps = 47/312 (15%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
            I +Y+ +    +L      + E + + I+   GD    KIT    ++ +          
Sbjct: 76  WIVQYKNTVKESTLN----KTLELFNNHILPIFGDLYMDKITVVFCQAALNDWYKRLQKY 131

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERP--KRKTEGIRPWT---KEDMQQFKSFWSE 188
                    +F +A+    V INP   V  P  K   E  +      KE++  F      
Sbjct: 132 KAISNYASRIFDYAITISAVEINPFKKVSMPIRKVDVEEEKVLNFYNKEELTLFFDHLKR 191

Query: 189 GSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQ----------------NNIFSIKTQKTG 230
            ++P     F  L ++G R  +      + +                 +N+  I+T KT 
Sbjct: 192 ENKPLQLALFRTLAFTGARKGEILALQWRDINFTDNTIKINKTVTFGLDNVLIIQTPKTK 251

Query: 231 TIIT-VELPDGFMKLLAM-TPIGKETFF--------------INNDKQKMNATQFSIWFK 274
           T +  + +    MK+L       KET+F               +     M   +   +  
Sbjct: 252 TSVRSISMDPQTMKILKSWKKTQKETYFKLGFNTLNPTQLVFPSTKNTVMQPPKVGKYLD 311

Query: 275 AKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLG 332
                  + + + HG R    ++  +AGA+  E+    G   +      Y    ++ +  
Sbjct: 312 RLVNLYELKRITPHGFRHTHCSLLFEAGASVKEVQDRLGHSNIQTTMNIYAHVTEKAK-- 369

Query: 333 IKNSRRISSVVD 344
              + + +  V+
Sbjct: 370 ENTADKFAKYVN 381


>gi|317497960|ref|ZP_07956267.1| phage integrase [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316894759|gb|EFV16934.1| phage integrase [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 361

 Score = 89.3 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 37/313 (11%), Positives = 98/313 (31%), Gaps = 62/313 (19%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYR----------------KITTKH 118
           + +Y K       A+N+ I++ +          D+ Y                      +
Sbjct: 27  VYDYLKYQDQRDRAINTLIAYGNDLKAFWEFLSDYGYAYDEVSPKMIGEYKEYLMSEDDN 86

Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINP--CLSVERP------------ 164
           I +  +    T  +  + L+++   +++    + +  NP     V RP            
Sbjct: 87  IIAINKEGARTAKTINRMLSTLHGFYQYKADMQEID-NPLLMHEVNRPFNAFKGILEHAR 145

Query: 165 ---KRKTEGIRP---------WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRA 212
              K K    +           + ++M+ F S   +  +  L ++ L  +G R  +    
Sbjct: 146 SDNKTKQSIFKVKESNYKINLVSDDEMELFLSRLDKR-RDILLYKMLYLTGARIQEVLDL 204

Query: 213 GVQ-----HLQNNIFSIKTQK-TGTIITVELPDGFMKLLA--------MTPIGKETFFIN 258
            ++      +   +   +  K  G    + +P   ++ L         +        F++
Sbjct: 205 EIESVPVPDMSQPVGCFQQIKSKGKTRDLYVPMSLIQELDDFIFEERNLIDTDHSYIFVS 264

Query: 259 ND----KQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWK 314
                  +++  +      K    + G++ + H +R    +    +G     +    G +
Sbjct: 265 EQARQLGKQLTYSAAYDKLKKVQKEVGIDFNFHDLRHTFCSNLVQSGMDVSVVRMIMGHE 324

Query: 315 TVDQAETYTKGAD 327
            +   + YT  ++
Sbjct: 325 HLSTTQKYTHLSN 337


>gi|298293261|ref|YP_003695200.1| integrase family protein [Starkeya novella DSM 506]
 gi|296929772|gb|ADH90581.1| integrase family protein [Starkeya novella DSM 506]
          Length = 328

 Score = 89.3 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 37/275 (13%), Positives = 86/275 (31%), Gaps = 34/275 (12%)

Query: 82  AHWGSLAVNSRISFESYF--------DQIIRKSGDFDYRKITTKHIRSGVESRKHT---P 130
            H   L+  +R ++             QI R+    D   ++ + +R+ + +R+      
Sbjct: 36  GHERRLSPKTREAYARDMSIFLGLLARQIGRQPEIADLANLSPREVRAVIAARRAEGIEA 95

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
            + ++FL + R   +   R+    +    +V  P+      RP +  D +      +   
Sbjct: 96  RTQMRFLAAARSFGRHMEREGLGKVGALTAVRAPRIARTLPRPLSPADARAMADPATRAG 155

Query: 191 QPR---------LAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVEL 237
           + R              L  SGLR S++     + +    + +   +   K G    V +
Sbjct: 156 EEREPWVLMRDAAVIALLYGSGLRISEALGLMRRDMPEPGRGDQIVVH-GKGGKTRMVPV 214

Query: 238 PDGFMKLLAMTPIG-------KETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHG 288
                +++               + F       ++     +  +      G+    + H 
Sbjct: 215 LRQVAEMVDAYVCACPYELEPSSSLFRGAKGGPLSPRIVQLAVERMRGGLGLPDSATPHA 274

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           +R   AT     G     +    G  ++   + Y 
Sbjct: 275 LRHSFATHLLGRGGDLRSIQELLGHASLSTTQIYA 309


>gi|167628712|ref|YP_001679211.1| phage integrase [Heliobacterium modesticaldum Ice1]
 gi|167591452|gb|ABZ83200.1| phage integrase [Heliobacterium modesticaldum Ice1]
          Length = 421

 Score = 89.3 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 39/301 (12%), Positives = 85/301 (28%), Gaps = 26/301 (8%)

Query: 46  AYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK 105
            + + ++G           RK P   + + +EY +     S    +         +++++
Sbjct: 88  RFDAFMSGRDLALRSPRVVRKCPIQFEGVFAEYLEDLRLRSYRERTVEDHRLNILKVLKE 147

Query: 106 S---GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162
               G  +   I   +I +              F +++R   ++  +   +  +  + V 
Sbjct: 148 FDASGVKNIAHIVPANIYNIFN----GIHRKNSFYSTLRQFLRFLFKNRVLHDDYSVLVP 203

Query: 163 RPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218
             +  +     +TK ++ Q           G +        L  GLR  D     +  + 
Sbjct: 204 SVRYSSPVPSIYTKSEITQLLKAIDTSTKTGKRNYAIVMLALRLGLRTGDIVNLKISDVN 263

Query: 219 --NNIFSIKTQKTGTIITVELPDGFMKLL------AMTPIGKETFFIN--NDKQKMNATQ 268
             N       +KT     + L     K L      A         F++     + +  + 
Sbjct: 264 FTNKEICFIQEKTQLPQRLVLLPEIEKSLLSYLSTARPDCDSPNIFLSLLAPYRPLTPSL 323

Query: 269 FSIWFKAKATKAGV-----NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
                      AG+        AH +R   A+           +    G       + Y 
Sbjct: 324 IWAHIHTHIESAGIIIGERKSGAHSLRMTLASELVAEKVPYDVVRKILGHDDPVSIKHYV 383

Query: 324 K 324
           K
Sbjct: 384 K 384


>gi|291524801|emb|CBK90388.1| Site-specific recombinase XerD [Eubacterium rectale DSM 17629]
          Length = 349

 Score = 89.3 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 39/234 (16%), Positives = 74/234 (31%), Gaps = 31/234 (13%)

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
               + L S+R  + +  R+E++  NP   V  PK   + I     +++ Q       G 
Sbjct: 109 RGIKRKLASLRTFYNFYFRKEFIDTNPASKVTLPKIHEKNIIRLDTDEVAQLLDEVESGD 168

Query: 191 ---------------QPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTII 233
                          +       LL +G+R S+     +  +   NN   +  +K G  +
Sbjct: 169 SLSKNQQRFHEKTKVRDLALMTLLLGTGIRVSECVGLDMDDVDFKNNGIKVH-RKGGADV 227

Query: 234 TVELPDGFMKLLA--------MTPIGKE--TFFINNDKQKMNATQFSIWFKAKATKAGV- 282
            V   D     L         +TP        F++  +++++        K  +      
Sbjct: 228 IVYFGDEVRDALLSYWEERSIITPAEGHANALFLSLQRKRISVRSVENLVKKYSRLVTTV 287

Query: 283 -NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIK 334
            N + H +R    T         + +    G K V+   + Y    D  R    
Sbjct: 288 KNITPHKLRSTYGTTLYQETGDIYLVADVLGHKDVNTTRKHYAAQEDSRRRAAA 341


>gi|268679739|ref|YP_003304170.1| integrase family protein [Sulfurospirillum deleyianum DSM 6946]
 gi|268617770|gb|ACZ12135.1| integrase family protein [Sulfurospirillum deleyianum DSM 6946]
          Length = 338

 Score = 89.3 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 51/289 (17%), Positives = 106/289 (36%), Gaps = 27/289 (9%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH 128
           TL++ I  + K      L   +   ++S  D  I  K        I T  ++  +  +  
Sbjct: 46  TLQYYIDRFIKEKK-HFLKERTFYRYKSIIDQYITPKYAHKKVVDIKTSLLKEYLNYQFG 104

Query: 129 TPSSAIQF---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
              SA       T    L + A+    ++ NP ++++R   +   I P++K +++     
Sbjct: 105 LGKSAKSIELYRTVFSGLLQEALFDNVISSNPFVNIKRKPIQKPVITPFSKSEVRLLLEE 164

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ---------KT-GTIITV 235
                Q  +A     Y+GLR  +        + +N+ S++           KT  ++  V
Sbjct: 165 SEGWLQNYIA--VATYTGLRSGEIIGLKWNDISHNVISVRRTRDFNRDTKPKTLNSMRDV 222

Query: 236 ELPDGFMKLL---AMTPIGKETFFINNDKQKMNAT---QFSIWFKAKATKAGVN-KSAHG 288
            L +G    L          E  F+  DK+  + T     + W+     + G+  +  + 
Sbjct: 223 PLFEGLKPFLDNQRKITGQCEYVFVRRDKKPWSDTQNISCAYWY-PLLDRLGLKRRRLYE 281

Query: 289 VRKFSATISADAGA-TAHELMATYGWKTVD-QAETYTKGADRIRLGIKN 335
           +R   AT   ++G     ++    G  T +     Y++  +  R  + +
Sbjct: 282 MRHTFATNMLNSGKYKVTDIAQMLGHSTTEYLFNVYSRYIEAERKNVDS 330


>gi|212692651|ref|ZP_03300779.1| hypothetical protein BACDOR_02148 [Bacteroides dorei DSM 17855]
 gi|265754552|ref|ZP_06089604.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|212664729|gb|EEB25301.1| hypothetical protein BACDOR_02148 [Bacteroides dorei DSM 17855]
 gi|263234666|gb|EEZ20234.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 372

 Score = 89.3 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 42/270 (15%), Positives = 87/270 (32%), Gaps = 22/270 (8%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQII--RKSGDFDYRKITTKHIRSGVESRKH--T 129
           LI ++  + H        +    +    +    +        +T     + +E  +    
Sbjct: 97  LIGQFLDTYH-----KKDKKMVRACITHLRLFTRKKSLPVNLLTKDFCINFLEYLRDHLR 151

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            ++ I +    R+     + ++ +  NP   +   +         + +++Q+        
Sbjct: 152 GNTPIGYFKKFRMCINKCIEKKLMTSNPTDGIRLMQFDEVTKAILSLKEIQKLAITPCPN 211

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQK-----TGTIITVELPDGFM 242
           ++ + AF F  Y GLR  D  +   + +   +N  +I  QK        I+ + L    +
Sbjct: 212 NEVKRAFLFSCYCGLRWCDVHQLQYKDIDFSSNRLTILQQKVQSHSKNAILHLNLNHTAI 271

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
           KLL       E                + W K    +A ++K  + H  R    T     
Sbjct: 272 KLLQRHKGINEDLVFGLPSYSYTLRILNKWVK----RANIHKHITFHCARHSFITNIMAN 327

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIR 330
           GA      +  G  T    E Y    D ++
Sbjct: 328 GANIKTAASLAGHSTTRHTEKYVHIIDELK 357


>gi|23464983|ref|NP_695586.1| phage family integrase/recombinase protein [Bifidobacterium longum
           NCC2705]
 gi|23325582|gb|AAN24222.1| probable phage-family integrase/recombinase protein
           [Bifidobacterium longum NCC2705]
          Length = 276

 Score = 89.3 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 40/277 (14%), Positives = 87/277 (31%), Gaps = 13/277 (4%)

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
            +  P   +  I+ + +S     L+ ++  +         R      Y  +T++ +    
Sbjct: 5   KKLPPAQWRDEITLWLESLTAAGLSQDTVNTRRCKIGHAARCLDKSPY-DVTSEDLVHWT 63

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
            S+     +   +  ++   F+W       A +P  ++  PK +     P    D+  + 
Sbjct: 64  ASQSWKAETRKGYRNTLVGFFRWLHATGRRADDPAAAL--PKVRKTRPHPRPCPDVHIYA 121

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL---QNNIFSIKTQKTGTIITVELPDG 240
           +  +     RL       +GLR S+      + +         I   K      V + + 
Sbjct: 122 AMCAANDVERLMLRLGAEAGLRLSEIAAVHSRDVLEGDAGPSLIVRGKGDKQRIVPISED 181

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADA 300
             K +   P      F    +  +  +  S   +            H +R   AT   + 
Sbjct: 182 LAKRITAAP---GWLFPGRWRGHVEKSYVS---RHLTRLLPDGWGPHSLRHRYATRMYET 235

Query: 301 GATAHELMATYGWKTVDQAETYTKGAD-RIRLGIKNS 336
                 +    G  +V+  + Y    D R+R+G+   
Sbjct: 236 THDLLLVSKLLGHSSVETTQIYVAMPDSRLRVGLDAV 272


>gi|323709096|gb|ADY02569.1| IntI1 integron integrase [Aeromonas media]
          Length = 310

 Score = 89.3 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 91/301 (30%), Gaps = 62/301 (20%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129
           ++ + R+   +   ++ +  ++  +    IR  G      + +  + + +      RK +
Sbjct: 16  VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75

Query: 130 PSSAIQFLTSMRVLFK--WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            S+  Q L ++   +         ++       + RP+         T +++ +   F  
Sbjct: 76  VSTHRQALAALLFFYGKVLCTDLPWLQ-----EIGRPRPSRRLPVVLTPDEVVRILGFL- 129

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
           EG   RL  + L  +G+R S+  +  V+     N    ++  K      + LP+     L
Sbjct: 130 EGEH-RLFAQLLYGTGMRISEGLQLRVKDLDFDNGTIIVREGKGSKDRALMLPESLAPSL 188

Query: 246 AMTPIGKETFFINN---------------------------------------------D 260
                    +++ +                                              
Sbjct: 189 REQLSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVR 248

Query: 261 KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           +  M    F   FK    +AG+ K  + H +R   AT    +G     +    G   V  
Sbjct: 249 RHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVST 308

Query: 319 A 319
            
Sbjct: 309 T 309


>gi|323936701|gb|EGB32986.1| phage integrase [Escherichia coli E1520]
          Length = 337

 Score = 89.3 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 42/207 (20%), Positives = 78/207 (37%), Gaps = 10/207 (4%)

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYV-AINPCLSVERPKRKTEGIRPWTKEDM 179
           +   S+   PSS  + LT +  +F   +  E     +P    +R K +       T+E++
Sbjct: 111 ATRRSQGIKPSSINRDLTCISGMFTALIEAELFFGEHPIRGTKRLKEEKPDTGYLTQEEI 170

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239
               +    G   ++A    L +G R  ++ R   +++ +N  +    KT    TV + +
Sbjct: 171 ALLLAALD-GDNKKIAI-LCLSTGARWGEAARLKAENIIHNRVTFVKTKTNKPRTVPISE 228

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISAD 299
              K++A    G    F + D  +   T      KA      + ++ H +R   AT    
Sbjct: 229 AVAKMIADNKRG--FLFPDADYPRFRRT-----MKAIKPDLPMGQATHALRHSFATHFMI 281

Query: 300 AGATAHELMATYGWKTVDQAETYTKGA 326
            G +   L    G   ++Q   Y   A
Sbjct: 282 NGGSIITLQRILGHTRIEQTMVYAHFA 308


>gi|302338517|ref|YP_003803723.1| integrase family protein [Spirochaeta smaragdinae DSM 11293]
 gi|301635702|gb|ADK81129.1| integrase family protein [Spirochaeta smaragdinae DSM 11293]
          Length = 413

 Score = 89.3 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 54/381 (14%), Positives = 118/381 (30%), Gaps = 67/381 (17%)

Query: 10  FVTKERTRHGKIIYYFRKGHGRRIRLP-------YPHESTFIPAYMSALTGSTPKREYIN 62
           ++   RT   K ++Y++       RLP       Y  +   + +   A+       E   
Sbjct: 9   YILFPRTLKNKTVWYYQAYGTDGKRLPAKSTGIGYTRKKDEVKSRKEAVAYCQELLEKNR 68

Query: 63  SPRKKPTTLKWLIS-----EYRKSAHWGSLAVNSRISF------------ESYFDQIIRK 105
             ++K  TL   +      +YR+S++  ++   S                +   D I+  
Sbjct: 69  LSKEKVVTLAQWVESRYFWDYRRSSYVRAILARSSKEKPGITENYCNGATQITRDHILPY 128

Query: 106 SGDFDYRKITTKHIRSGVESRKHTPS--SAIQFLTSMRVLF-KWAVRQEYVAI-----NP 157
            GD    KIT       +    +  S  +A  + +    +  ++   Q+         NP
Sbjct: 129 HGDKPIEKITPLDCEDLLFKWANQVSHKTANNWKSVYSTILGEYERIQKMRDTTAAYFNP 188

Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS-QPRL---AFEFLLYSGLRCSDSCRAG 213
              V             + +++++        S + R+   A +    +GLR  + C   
Sbjct: 189 WRMVRPLSVDKNRYGALSIDEVEKLLEDSGISSDKDRIYYTAMKVAFMAGLRIGEVCGLF 248

Query: 214 VQHLQNNIF-----------------------SIKTQKTGTIITVELPDGFMKLLAMTPI 250
              + ++                              K   I  + +     + L     
Sbjct: 249 TDDVIDSEIVRGDKTVTLSYLQISKQYHSKLKKRTPVKDKGIREIPIMPELREELNCYMT 308

Query: 251 GKETFFINNDKQ---KMNATQFSIWFKAKATKAGVNK-----SAHGVRKFSATISADAGA 302
           G E F  ++  +    + A +   W   +  + G+ +     + H  R+F  T+    G 
Sbjct: 309 GPERFVFSHHPRQETPLTANRLREWMYKRMDEMGIEREGRNITFHSARRFFNTLLRHNGV 368

Query: 303 TAHELMATYGWKTVDQAETYT 323
           +   +    G  + +  + YT
Sbjct: 369 SDDVIRKFTGHDSQEMTDHYT 389


>gi|260774302|ref|ZP_05883217.1| integron integrase IntI4 [Vibrio metschnikovii CIP 69.14]
 gi|260611263|gb|EEX36467.1| integron integrase IntI4 [Vibrio metschnikovii CIP 69.14]
          Length = 320

 Score = 89.3 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 46/306 (15%), Positives = 95/306 (31%), Gaps = 58/306 (18%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
           + EY +  ++ +    +  S+  +  Q +          + ++ +   +         A 
Sbjct: 9   VKEYMQVRYYAN---KTIESYIHWITQYVVFHNKTHPNLLGSRDVEQFLTYLAVEKKVAT 65

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPK--RKTEGIRPWTKEDMQQFKSFWSEGSQP 192
           +  +       +   +E +     L ++  K   + +     T+E++++F +      + 
Sbjct: 66  KTQSLALNALSFLY-REIIKEPLTLEMKFQKSQLERKLPIVMTREEIKRFFNHVDP--KY 122

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLAM--- 247
           +L  + L  SGLR  +  R  VQ +  +  +++    K G   TV L      L+     
Sbjct: 123 QLHIKLLYGSGLRLMECVRLRVQDIDFDYGALRIWQGKGGKNRTVTLAKELHPLIKEQIS 182

Query: 248 -----------TPIGKETFFINN--------------------------------DKQKM 264
                      T      +  N                                  +  +
Sbjct: 183 LAKRYYDKDMETKGYGGVWLPNALNSKYPTAPFEFHWHYLFPSNALSVDQESNLLRRHHI 242

Query: 265 NATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           N T      K    +A + KS   H +R   AT   ++GA    +    G   V   + Y
Sbjct: 243 NETSLQRTVKRAVKEAEIKKSVSCHTLRHSFATHLLESGADIRTVQEQLGHADVSTTQIY 302

Query: 323 TKGADR 328
           T   DR
Sbjct: 303 THVLDR 308


>gi|91790630|ref|YP_551582.1| phage integrase [Polaromonas sp. JS666]
 gi|91699855|gb|ABE46684.1| phage integrase [Polaromonas sp. JS666]
          Length = 291

 Score = 89.3 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 36/270 (13%), Positives = 89/270 (32%), Gaps = 23/270 (8%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVESRKHTP 130
           L            L   ++ S+     ++   +R+S D    +   +  +  +  +  +P
Sbjct: 11  LRQRMLDDMRLRKLEDKTQSSYIRAVRKLAGFLRRSPDTATVE-DLRRFQLHLVDQGTSP 69

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
            +    +T ++  F+  + +     +    ++  +   +     + +++ +  +  +   
Sbjct: 70  ITLNATITGLKFFFEVTLER----ADLMARMQSVRVPQKLPVVLSPQEVARLIA-ATANL 124

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLAMT 248
           + + A      +GLR S+     V  + +   +++    K        L    ++ L   
Sbjct: 125 KHQTALSVAYGAGLRASEVIALKVGDIDSQRMTLRVEQGKGRKDRYAMLAPVLLQRLRAW 184

Query: 249 ----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATI 296
                       G   F   +  Q +   Q +    A A  A ++K  S H +R   AT 
Sbjct: 185 WRVGHAQGKMLPGGWLFPGLDPVQPLTTRQLNRAIHAAAQDAKIDKRVSMHTLRHSFATH 244

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326
             +       +    G K ++    YT  A
Sbjct: 245 LLEQKVDIRVIQVLLGHKKLETTSMYTHVA 274


>gi|330902727|gb|EGH33740.1| hypothetical protein PSYJA_34455 [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 206

 Score = 89.3 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 40/197 (20%), Positives = 70/197 (35%), Gaps = 24/197 (12%)

Query: 156 NPCLSVERPKRKT-EGIRPWTKED-----MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDS 209
           NP   V+RP+ ++ EG  P   +      ++       +G + R     LLY GLR  ++
Sbjct: 6   NPVHGVKRPRIESNEGKTPALGDHQAKALLEAPDETTLKGQRDRALLAVLLYHGLRREEA 65

Query: 210 CRAGVQHL--QNNIFSIKT-QKTGTIITVELPDG--------FMKLLAMTPIGKETFFIN 258
               V  +  +  I  +K   K G +  + L                      K   F+ 
Sbjct: 66  ALLQVSDIQERRGIQHLKVHGKGGKVRYLPLHPIAAGRIHQYLENSEHHLAERKVPLFMP 125

Query: 259 NDKQ----KMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAGATAHELMATY 311
              +     + A        A A KAG+       HG+R  +AT + +  A   ++ A  
Sbjct: 126 LRGKLTGAGITANGIYAVVTAYAKKAGIEVDGLGVHGLRATAATNALEHEADIAKVQAWL 185

Query: 312 GWKTVDQAETYTKGADR 328
           G   +   + Y +  +R
Sbjct: 186 GHANISTTKIYDRRENR 202


>gi|304382578|ref|ZP_07365072.1| possible tyrosine type site-specific recombinase [Prevotella
           marshii DSM 16973]
 gi|304336203|gb|EFM02445.1| possible tyrosine type site-specific recombinase [Prevotella
           marshii DSM 16973]
          Length = 387

 Score = 89.3 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 42/239 (17%), Positives = 87/239 (36%), Gaps = 19/239 (7%)

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
            +    +  SS    L  +  + + A+++ YV  +P   ++  +  T      T +D+Q+
Sbjct: 132 MLRDLGNKESSVGNRLRHLHQVIRKALQERYVREDPFELID-IETPTYERNALTADDVQK 190

Query: 182 FKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHL-----QNNIFSIKTQKTGTII 233
             ++    S     RL F    ++GL  SD  +  +  +          S+   KT    
Sbjct: 191 LLAYRPHRSTENHCRLIFLLGCFTGLAFSDLKKLRMDDVYTLSDGRRYISLCRTKTQNRS 250

Query: 234 TVELPDGFMKLLAMTPIG-KETFFINNDKQKMNATQFSIWFKAKATKAGVN----KSAHG 288
            V L     ++LA+   G +E  F          + F+   +  + KAG+      ++H 
Sbjct: 251 IVPLLPIAEEILAIVSHGRREGLFFREF---PCNSNFNRTIQEISIKAGLPPHTQATSHT 307

Query: 289 VRKFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346
            R   AT    + G     +    G + +   E Y +   + ++  +    + S    +
Sbjct: 308 ARHTFATTICLENGLPIETVSKMLGHRFISTTEIYAR-VTKSKIAKEMQPLMGSERTRE 365


>gi|257125272|ref|YP_003163386.1| integrase [Leptotrichia buccalis C-1013-b]
 gi|257049211|gb|ACV38395.1| integrase domain protein SAM domain protein [Leptotrichia buccalis
           C-1013-b]
          Length = 284

 Score = 89.3 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 44/261 (16%), Positives = 97/261 (37%), Gaps = 22/261 (8%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFK 145
           + N+   +     Q        D+ +I  K I S +++  +K   +S ++ ++ ++  +K
Sbjct: 17  SQNTLNGYNRDLTQFFLFV-KKDFSEIGEKEISSYIDNLNKKLRKNSVLRKVSVLKTFYK 75

Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLAFEFLLYS 202
           +    + +  +P   ++  KR+ +     T E+++Q          G Q RL  + L+ +
Sbjct: 76  FCYLNKLITKDPAGIIKNLKREYQPPETLTLEEIKQIVDNCPNTPAGIQNRLIIKLLIVT 135

Query: 203 GLRCSDSCRAGVQHLQN--NIFSIKTQKTGT--------IITVELPDGFMKLLAMTPIGK 252
           G   S+     ++ ++N  + F     K              +E+ +             
Sbjct: 136 GAMISEILNLKIKDIENQYDKFIKTLGKNSKYQIKLIDNSFEIEIKNYLEIYRPKLKNAN 195

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMAT 310
           E+  I  D   +   +F    K  A  A + K+   H  R     I ++A A    +   
Sbjct: 196 ESLKIFPD---IRREKFWKNLKIIAQNAKIEKNVYPHIFRNSLVGILSEANADICIIQEV 252

Query: 311 YGWKTVDQAETYTKGADRIRL 331
            G   +  A+   K  ++ +L
Sbjct: 253 LGKVNITTAKI-KKNVEKSKL 272


>gi|237719819|ref|ZP_04550300.1| integrase [Bacteroides sp. 2_2_4]
 gi|229451088|gb|EEO56879.1| integrase [Bacteroides sp. 2_2_4]
 gi|295086377|emb|CBK67900.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A]
          Length = 389

 Score = 89.3 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 49/307 (15%), Positives = 105/307 (34%), Gaps = 30/307 (9%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFD------QIIRKSGDFDYRKITTKHIRSGV 123
           T+K L   Y        L+ ++   +           +I  K  D+D   I    +    
Sbjct: 78  TIKTLFE-YHMIMEGKKLSQSTCYQYGVTLKYLLSYVRIKHKVADYDISIIDAAFVNEFF 136

Query: 124 ---------ESRKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
                    ++ K    + A++ +   + + + A   E++  NP  +++  K KT+    
Sbjct: 137 AYLQGYLRQDNMKRCDINGALKHMERFKKVMEMAFNNEWINRNPVKALKAHKEKTDINE- 195

Query: 174 WTKEDMQQFKSFWSEGSQ--PRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKT 226
             +E +++  +     +    R  F F +Y+G+   D  R   +++            K 
Sbjct: 196 LDEEAVKRLSTVILPPNLGIVRDLFIFAVYTGVSYEDMTRLTQKNIVIGIDKSLWLHYKR 255

Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF-KAKATKAGVN-- 283
            KTG  +++ L +  ++++       +    N       + Q    + K  A  AGV   
Sbjct: 256 VKTGVRVSLPLLEPALEIINRYDTYHKGGKKNQPLFPYVSNQIMNRYLKKVAKLAGVEDR 315

Query: 284 KSAHGVRKFSA-TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN-SRRISS 341
            + H  R   A TI+         +    G   +   + Y +  D   +      + + S
Sbjct: 316 VTYHVARHTFATTITLQHEIPLETVSKMLGHTKITTTQVYARVVDTKVMRDMATLKDMYS 375

Query: 342 VVDSDDP 348
             +   P
Sbjct: 376 HKEDKSP 382


>gi|325300611|ref|YP_004260528.1| integrase family protein [Bacteroides salanitronis DSM 18170]
 gi|324320164|gb|ADY38055.1| integrase family protein [Bacteroides salanitronis DSM 18170]
          Length = 410

 Score = 89.3 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 50/292 (17%), Positives = 92/292 (31%), Gaps = 38/292 (13%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFES------YFDQIIR-KSGDFDYRKITTKH 118
           K+ TT      +Y +          +  ++        +F+  ++ K G  D       H
Sbjct: 104 KECTTFLDFYGKYLEDIKAQVGKGKTLATYHKYSAAGKHFENFLKLKYGRKDIMPSELTH 163

Query: 119 IRS------GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
           +                P+SA + L   + +  +A +   +  +P     R   ++    
Sbjct: 164 VIIHDFDIYLRTVVSLKPNSATKTLKFFKTVVIFAQKCGVLTHDPFAQ-HRFHLESVDRG 222

Query: 173 PWTKEDMQQFKSFWSEGSQPRL-----AFEFLLYSGLRCSDSCRAGVQHL----QNNIFS 223
             T +++ +      E S PRL      F F  + GL   D       ++          
Sbjct: 223 FLTDDEITRIME--KEFSTPRLESVRDIFIFSCFCGLAYIDVANLTQDNIVTLDGKKWIM 280

Query: 224 IKTQKTGTIITVELPD-GFM---KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK 279
            + QKT     + L D   M   K    T  GK    ++N K        + + K  A  
Sbjct: 281 TRRQKTHVESNILLLDIPLMIINKYKGKTKDGKLLPILSNQK-------MNAYLKEIADL 333

Query: 280 AGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            G+ K    H  R   AT+    G     +    G   +   + Y +  ++ 
Sbjct: 334 CGIKKRLTYHLARHTFATMMLSKGVPVESVSKMLGHANIKTTQIYARITNKK 385


>gi|300872293|gb|ADK38974.1| IntI4 [Vibrio sp. V92(2010)]
          Length = 296

 Score = 89.3 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 43/295 (14%), Positives = 88/295 (29%), Gaps = 57/295 (19%)

Query: 87  LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKW 146
           L   +  ++  +  + I          +  K +   +         A +  +       +
Sbjct: 1   LKQKTIEAYLHWITRYIHFHNKKHPSLMGDKEVEEFLTYLAVQGKVATKTQSLALNSLSF 60

Query: 147 AVRQEYVAINP-CLSVE--RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203
             ++  +   P  L +   R + + +     T++++++         + +L  + L  SG
Sbjct: 61  LYKE--ILKTPLSLEIRFQRSQLERKLPVVLTRDEIRRLLEIVDP--KHQLPIKLLYGSG 116

Query: 204 LRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLAMTPIGKETFFINN-- 259
           LR  +  R  VQ +  +  +I+    K G   TV L       L       + ++  +  
Sbjct: 117 LRLMECMRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHLKEQIALAKRYYDRDLH 176

Query: 260 --------------------------------------------DKQKMNATQFSIWFKA 275
                                                        +  MN T      + 
Sbjct: 177 QKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVMRRHHMNETVLQKAVRR 236

Query: 276 KATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
            A +AG+ K+   H +R   AT   + GA    +    G   V   + YT   DR
Sbjct: 237 SAQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVHEQLGHTDVKTTQIYTHVLDR 291


>gi|160934684|ref|ZP_02082070.1| hypothetical protein CLOLEP_03557 [Clostridium leptum DSM 753]
 gi|156866137|gb|EDO59509.1| hypothetical protein CLOLEP_03557 [Clostridium leptum DSM 753]
          Length = 412

 Score = 89.3 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 43/321 (13%), Positives = 92/321 (28%), Gaps = 69/321 (21%)

Query: 83  HWGSLAVNSRISFESYFDQ--IIRKSGDFDYRKITTKHIRSGVESRKHT----------- 129
            +  +   +  ++E+Y ++     K G    +K+  +        ++ +           
Sbjct: 88  KYILVRPATHTNYETYIEKHIYHSKLGSIPLKKLCLEDFIDFFREKELSGRLDKKPGGLA 147

Query: 130 PSSAIQFLTSMRVLFKWAV-RQEYVAINPCLSVERPKRKTEGIRPWTKED---MQQFKSF 185
           P +       M      AV R +++  NP   ++ PK     I+ ++K     ++Q   +
Sbjct: 148 PKTLRNMRNMMSEALAHAVNRLQWLDRNPIEGLKTPKVSPPQIQVYSKSHQTCIEQAALY 207

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGV-------QHLQNNIFSIKTQKTGTI------ 232
             +  +  L     LY+GLR  + C           ++ +      +  K          
Sbjct: 208 HED--KNALMVLIDLYTGLRIGELCGLSWIDFGPGKEYFKIRRILERLSKKWAENRSEYQ 265

Query: 233 --ITVELPDGFMKLLAMTPIGKET---------------------------------FFI 257
               V   +     L + P   E+                                  F+
Sbjct: 266 RIFMVGGKEEGATALYLGPPKTESGKRVVYTNDQAVLGFNRIETYQKKMGFYRPDGFVFV 325

Query: 258 NNDKQKMNATQFSIWFKAKATKAGVNKS-AHGVRKFSATISADAGATAHELMATYGWKTV 316
           N +        ++  ++    +AGV+    H +R   AT + +       L    G    
Sbjct: 326 NQNGNPYEPRAYNKLYRDVLQRAGVDYRKFHTLRHTFATRAFELAFDIPTLAEILGHAQK 385

Query: 317 DQAE-TYTKGADRIRLGIKNS 336
              E  Y    D  +      
Sbjct: 386 TTTENMYGHSLDDTKKSAMAR 406


>gi|124515110|gb|EAY56621.1| putative phage integrase [Leptospirillum rubarum]
 gi|206603735|gb|EDZ40215.1| Putative phage integrase [Leptospirillum sp. Group II '5-way CG']
          Length = 325

 Score = 89.3 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 51/320 (15%), Positives = 100/320 (31%), Gaps = 22/320 (6%)

Query: 16  TRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75
            R G      ++    RI            A+   +     +  +++    + TTL   +
Sbjct: 6   KRSGSWRAIVKRKGFDRIT-RTFDTKASAEAWARQIEAEMDRGVFVSRKEAESTTLSEAL 64

Query: 76  SEYRK---SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132
             Y +   S+  G     +RIS     +  + K     +R       R       ++ ++
Sbjct: 65  DRYEREVSSSKKGHRREKTRISIWK--NHPLAKRVLASFRGNDLAAYRDERIKAGYSANT 122

Query: 133 AIQFLTSMRVLFKWAVRQEYVA---INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
               L  +  LF+ A R+E+      NP  ++  P       R     ++++     SE 
Sbjct: 123 IRLELAIISHLFEIA-RKEWGMEGLTNPVKAIRMPSPPAGRDRRLQPGELEKLLESSSEE 181

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN--IFSIKTQKTGTIITVELPDGFMKLLAM 247
               + F   L + +R  +      + +       ++   K G    V L    + +L  
Sbjct: 182 MNQVIRF--ALETAMRRGELAGMTWEMVDMKKRTVTLPETKNGQKRIVPLSFVALSILKE 239

Query: 248 TPIGKETFFINNDKQKM--NATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATA 304
               +       D +         S  F      AG+     H +R  + +   + G   
Sbjct: 240 RLGTRRL-----DGKVWDIGLDAISQDFAKACRNAGISGLHFHDLRHEATSRLFEKGFDT 294

Query: 305 HELMATYGWKTVDQAETYTK 324
            E+    G KT+     YT 
Sbjct: 295 MEVRTITGHKTLQMLARYTH 314


>gi|26247388|ref|NP_753428.1| prophage lambda integrase [Escherichia coli CFT073]
 gi|227886506|ref|ZP_04004311.1| prophage lambda integrase [Escherichia coli 83972]
 gi|300938713|ref|ZP_07153437.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 21-1]
 gi|300975603|ref|ZP_07173082.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 45-1]
 gi|300982378|ref|ZP_07176076.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 200-1]
 gi|301046483|ref|ZP_07193636.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 185-1]
 gi|26107789|gb|AAN79988.1|AE016759_262 Prophage lambda integrase [Escherichia coli CFT073]
 gi|227836710|gb|EEJ47176.1| prophage lambda integrase [Escherichia coli 83972]
 gi|300301503|gb|EFJ57888.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 185-1]
 gi|300307215|gb|EFJ61735.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 200-1]
 gi|300410266|gb|EFJ93804.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 45-1]
 gi|300456358|gb|EFK19851.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 21-1]
 gi|307553138|gb|ADN45913.1| prophage lambda integrase [Escherichia coli ABU 83972]
 gi|315293095|gb|EFU52447.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 153-1]
          Length = 380

 Score = 89.3 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 59/358 (16%), Positives = 110/358 (30%), Gaps = 50/358 (13%)

Query: 9   PFVTKERT-RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTG----------STPK 57
           P +  +   R GK+ + ++     R       E+        A T           S  +
Sbjct: 13  PNLYCKLDKRTGKVYWQYKHPLSGRFHSLGTDENEAKQVATEANTIIAEQRTRQILSVNE 72

Query: 58  REYINSPRKKPTTLKWLISEYRKSAH----WGSLAVNSRISFESYFDQIIRKSGDFDYRK 113
           R      R+   T+   + +Y            L  NS               G    + 
Sbjct: 73  RLERMKGRRSDITVTEWLDKYISIQEDRLQHNELRPNSYRQKGKPIRLFREHCGMQHLKD 132

Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMRVL----FKWAVRQEYVA--INPCLSVERPKRK 167
           IT   I   +++ K       +    +R++    FK A    +V    NP  + ++P+ +
Sbjct: 133 ITALDIAEIIDAVKAEGH--NRMAQVVRMVLIDVFKEAQHAGHVPPGFNPAQATKQPRNR 190

Query: 168 TEGIRPWTKEDMQQ-FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226
               R  +  + Q  F S        +      L +G R  D C      + +++  I  
Sbjct: 191 VNRQR-LSLPEWQAIFDSVSRRQPYLKCGMLLALVTGQRLGDICNLKFSDIWDDMLHITQ 249

Query: 227 QKTGTIITVELP---DGFMKLLAMTPIGKETFFIN-------------NDKQKMNATQFS 270
           +KTG+ + + L    D     L           ++             N   +++A   +
Sbjct: 250 EKTGSKLAIPLNLKCDALNITLREVISQCRDAVVSKYLVHYRHTTSQANRGDQVSANTLT 309

Query: 271 IWFKAKATKAGVNK------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
             FK    K G+        + H  R  S  +  + G    +L    G K+    + Y
Sbjct: 310 TAFKKAREKCGIKWEPGTAPTFHEQRSLSERLYREQGLDTQKL---LGHKSRKMTDRY 364


>gi|56479230|ref|YP_160819.1| integrase or site-specific recombinase [Aromatoleum aromaticum
           EbN1]
 gi|56315273|emb|CAI09918.1| Integrase or site-specific recombinase [Aromatoleum aromaticum
           EbN1]
          Length = 425

 Score = 89.3 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 57/323 (17%), Positives = 118/323 (36%), Gaps = 33/323 (10%)

Query: 49  SALTGSTPKREYINSPR--KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRK 105
           +   G +P R+  +  R  ++  T K     + + A    LA ++    +S  D+ ++ K
Sbjct: 92  AVSRGESPARDKADGKRELRESGTFKAFAEIWLRDA---GLADSTVAMRKSILDRDVLPK 148

Query: 106 SGDFDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163
            G     +IT+  +    E  K    P++A+     ++ +++ A+ +     NP  +V+ 
Sbjct: 149 LGKRKLEEITSSQVFDLCEKIKERGAPATAVHAREIIQQVYRHAMARGLKIENPAENVKA 208

Query: 164 PKRKTEGI--RPWTKEDMQQFKSFWS-EGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQ 218
               T     R  T  +++ F +     G+ P  +LA +F+L S  R  +  +A  + + 
Sbjct: 209 SAIATFKPRERALTPGEIRTFFTVLDSVGTLPTLKLALKFILLSMCRKGELLQATWKEVD 268

Query: 219 NNIFSIKT----QKTGTIITVELPDGFMKLLAMTPI--GKETFFINNDK---QKMNATQF 269
               +        K      V L    + LL       G   + +       + M+    
Sbjct: 269 FEAATWTVPAERMKARRPHVVYLSQQALDLLVGLKTCAGSSPYLLPGRYETDKPMSEATL 328

Query: 270 SIWFKAKATKAGVNKS------AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           +    A   KA            H +R+  +T+  +AG     +      +       Y 
Sbjct: 329 NRVIAAVVEKAQKEGHELPHFCVHDLRRTGSTLLHEAGFNTDWIEKCLAHEQRGVRAVYN 388

Query: 324 KG--ADRIRLGIKNSRRISSVVD 344
           K   A++ R   +  +  + +VD
Sbjct: 389 KAEYAEQRR---EMLQSWADMVD 408


>gi|161504575|ref|YP_001571687.1| hypothetical protein SARI_02688 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160865922|gb|ABX22545.1| hypothetical protein SARI_02688 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 387

 Score = 89.3 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 49/293 (16%), Positives = 104/293 (35%), Gaps = 27/293 (9%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFL 137
           + +      L   +     S   ++  +  + +++ +     + G +     P  A    
Sbjct: 86  WLQHFAGIQLKDITETKIYSAIQKMTNRRHEENWKMMEEACRKKGKQPPVFKPKPAAIAT 145

Query: 138 TSMRVLFKWAV----RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
            +  + F  A+     +E+  ++    V+ P+ K + IR     + ++      E  +  
Sbjct: 146 KATHLSFIKALLRTAEREWKMLDKAPIVKVPQPKNKRIRWLEPHEAKRLIDECPEPLKS- 204

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGFMKLLAMTP 249
              EF L +GLR S+      Q +           +  K+   I V L D   ++L    
Sbjct: 205 -VVEFALSTGLRRSNIINLEWQQIDMQRKVAWIHPEQSKSNQAIGVALNDTACRVLKKQ- 262

Query: 250 IGKETFFINNDKQKMNATQFSI-------------WFKAKATKAGV-NKSAHGVRKFSAT 295
           IG    ++   K+       +               ++A   +AG+ +   H +R   A+
Sbjct: 263 IGNHHKWVFVYKESSTKPDRTKSPVVRKMRYDANTAWRAALKRAGIEDFRFHDLRHTWAS 322

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
               AG     L    GW++++    Y   A       +++R+I S+ D+  P
Sbjct: 323 WLVQAGVPISVLQEMGGWESIEMVRRYAHLAPNHL--TEHARQIDSIFDTSVP 373


>gi|186472282|ref|YP_001859624.1| integrase family protein [Burkholderia phymatum STM815]
 gi|184194614|gb|ACC72578.1| integrase family protein [Burkholderia phymatum STM815]
          Length = 437

 Score = 89.3 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 54/296 (18%), Positives = 95/296 (32%), Gaps = 45/296 (15%)

Query: 96  ESYFDQIIRKSGDF---DYRKITTKHIRSGVESRKH---TPSSAIQFLTSMRVLFKWAVR 149
           E     I R   D       ++T   ++  +E R       +   + L S+  LF +AV 
Sbjct: 141 EQNIKNIRRDFPDLMDRRLDEVTRPAMKKWIEKRLADGCKATGINRVLGSIGGLFSYAVE 200

Query: 150 QEYVAINPCLSVE---RPKRKTEGIRPWTKEDMQQFK----------------------- 183
            E +A NPC  +     P+  +E  R  T E+ Q+ +                       
Sbjct: 201 HEIIAANPCAKLRCKIDPEEDSEHGRELTAEEEQRLRVVLDERETRIREEAAARHDSRKV 260

Query: 184 -----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIIT 234
                 F S     + A    L +G+R S+  RA    +     +I+    T K      
Sbjct: 261 ATIPGEFHSFVDHVKPAILLALNTGMRRSELLRARWTAIDWKAQTIRIEAWTSKVKRTRV 320

Query: 235 VELPDGFMKLLAMTPIGK--ETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKF 292
           + +    + +L         E  F N   + +   +     K +A     +      R  
Sbjct: 321 IPMNVEALSILKAWRRQTRFEFIFTNEIGECLREVRDWNKIKREAQI--RDFRFMDTRHH 378

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
           +AT   + GA+ + +    G K     + Y +  D           +    D+D P
Sbjct: 379 TATRMINEGASPYHVQKLLGHKDGRMTQRYMRARDVKLAEAVALLDVPRQADADHP 434


>gi|291459452|ref|ZP_06598842.1| site-specific recombinase, phage integrase family [Oribacterium sp.
           oral taxon 078 str. F0262]
 gi|291418051|gb|EFE91770.1| site-specific recombinase, phage integrase family [Oribacterium sp.
           oral taxon 078 str. F0262]
          Length = 348

 Score = 89.3 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 45/298 (15%), Positives = 91/298 (30%), Gaps = 63/298 (21%)

Query: 85  GSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGV----ESRKHTPSSAIQFLTS 139
             L  ++  +++  +   +    G    +K+    ++       + R    ++     T 
Sbjct: 7   RGLKDSTFQNYKYTYTLNVKPSFGRMLIKKVRKSDVKRFYNSLADERNLKATTIDGIHTV 66

Query: 140 MRVLFKWAVRQEYVAINPCLSVER-PKR----KTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
           +  +F  AV   Y+  NPC +V R  K+    KTE  R  T+++   F +F  +  + R 
Sbjct: 67  LHQVFDLAVDDNYIRSNPCDNVLRELKQSHVFKTEKRRGLTRQEQDLFLNFLKKSEKYRH 126

Query: 195 A---FEFLLYSGLRCSDSCRAGVQHLQ--NNIF------------------SIKTQKTGT 231
               F  ++ +GLR  ++       +   +                     +I T KT  
Sbjct: 127 WYPIFAIMIGTGLRVGEATGLRWCDIDLEDGFIDVNHTLVYYQHEVNGCYFNINTPKTEA 186

Query: 232 -IITVELPDGFMKL---------------LAMTPIGKETFFINNDKQKMNATQFSIWFKA 275
               V + D   +                LA      +  F+N      + +  +   + 
Sbjct: 187 GRRIVPMLDFVKEAFLEEKHRQEREGIRSLAQVDGYADFIFVNRFGMLQHQSTLNKAIRR 246

Query: 276 KATKAG--------------VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
                                + S H +R    T   +AG     +  T G   +   
Sbjct: 247 ITRDCNDEVLLKDPEATVLLPHFSCHSLRHTFTTRMCEAGVNVKVIQDTLGHADISTT 304


>gi|200388050|ref|ZP_03214662.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|199605148|gb|EDZ03693.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
          Length = 337

 Score = 89.3 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 46/321 (14%), Positives = 91/321 (28%), Gaps = 44/321 (13%)

Query: 29  HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLA 88
            G+RIR           AY   +T    ++ ++   +     L  LI        W  L 
Sbjct: 21  KGKRIR-RKFATKGEALAYEKYITSEMEEKPWLGEKQDNRR-LSELIEL------WHDLY 72

Query: 89  VNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGVESR-------------KHTPSS 132
             +    +    +   I    G+    +IT        E R                P +
Sbjct: 73  GRTLADSDRMMSKLKGICAGMGNPIAAQITAADFSKYREGRLKGEIPDVNGRCMPIQPQT 132

Query: 133 AIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
                 ++  +F    +   +   NP   +   K   + +     E+++    + SE + 
Sbjct: 133 VNHEQRNLSAVFGTLKKLGHWSLPNPLSGIPTFKVDEKMVSFLYPEEIKTLLQYLSESNS 192

Query: 192 P--RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP 249
           P   +  +  L +G R S++       +     + K  K+  + ++ +       +    
Sbjct: 193 PSVLIIAKICLATGARWSEAENLEGSQVTPYRITYKNTKSRKVRSIPISKELYNEIPK-- 250

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGV----NKSAHGVRKFSATISADAGATAH 305
                       Q          F+    KAG+     +  H +R   A+     G    
Sbjct: 251 ---------KRGQLFTP--CRKTFERTVAKAGIELPEGQCTHVLRHTFASHFMMNGGNIL 299

Query: 306 ELMATYGWKTVDQAETYTKGA 326
            L    G   +     Y   A
Sbjct: 300 VLKEILGHSDIKMTMIYAHFA 320


>gi|84516131|ref|ZP_01003491.1| putative integrase/resolvase recombinase protein [Loktanella
           vestfoldensis SKA53]
 gi|84509827|gb|EAQ06284.1| putative integrase/resolvase recombinase protein [Loktanella
           vestfoldensis SKA53]
          Length = 453

 Score = 89.3 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 42/269 (15%), Positives = 90/269 (33%), Gaps = 24/269 (8%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT--PSS 132
           + EY ++  +G     +    E    Q    +GD     +T   I    +    T    +
Sbjct: 155 VREYLETHPYG--PAKTTRDCELSLSQFQDFTGDMVLTDLTAVLIHQYADHLGATKSRKT 212

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSV---ERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
             + ++ ++ LF  AVR+ +V  N  + +   ++  R  E  RP+T  +++      S  
Sbjct: 213 IAKKISYVKRLFDHAVRKGWVPQNVFVGIVLDKKVGRAKESYRPFTSSELEAIFKQ-SMP 271

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-------KTQKTGTIITVELPDGFM 242
              R     L+ +G+R  ++     + ++     +         +  G+   V +     
Sbjct: 272 DHQRKLLTILITTGMRLDEAALLDWEDIKEEQGVVYYDLSDKLVKNKGSQRRVPVHSSLS 331

Query: 243 KLLAMTPIGKET---------FFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFS 293
            + +       T         F  + D +   +   ++    +       K  H +R   
Sbjct: 332 WVTSGRTSEATTGKVGQMFPEFTRDKDGKAQASASKALMPLIRRVTDDKAKVVHSLRGNF 391

Query: 294 ATISADAGATAHELMATYGWKTVDQAETY 322
             +  DAG +        G  + D A  Y
Sbjct: 392 KDMLRDAGVSKEVNDFITGHASGDVAGNY 420


>gi|306830631|ref|ZP_07463796.1| probable phage integrase [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|304427139|gb|EFM30246.1| probable phage integrase [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
          Length = 386

 Score = 89.3 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 65/374 (17%), Positives = 121/374 (32%), Gaps = 66/374 (17%)

Query: 9   PFVTKERTRHGKIIYYFRKG---HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
           P +    T+ GK  YY R+    HG++  +      T   A   AL     K    +   
Sbjct: 9   PNIFTYETKKGK-RYYVRRKFKLHGKQTEVSASGLKTVAEA-RQALAEIENKIANGDYDP 66

Query: 66  KKPTTLKWLISEY----RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121
           +K  T+      Y     K+  W    V ++ S+ ++     ++ G    + I      +
Sbjct: 67  RKNMTVNDYWQIYSENRIKTGRWAPDTVMTKTSWYNH--HFSKQFGATLLKDIKRTKYEA 124

Query: 122 GVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV---------ERPKRKTEG 170
            + S    ++ ++ IQ       +   AV   Y+  NP L +         ++ +   E 
Sbjct: 125 YISSLLNSYSRATVIQINALFEAMVTDAVVNGYLDKNPILKIYIGKSNIPTKKKRLSLEE 184

Query: 171 IRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ------------ 218
            R W  ++  +      + +  RL      Y GLR S+        L+            
Sbjct: 185 FRSW--DECARKILSSYDYTMARLT-----YFGLRRSEVLGIKFSSLKLVNGRFRIFLDE 237

Query: 219 --------NNIFSIKTQKTGTIITVELPDGFMKLLAMT---------PIGKETFFI---- 257
                         +T K   ++  E  D   K +             +G+  F      
Sbjct: 238 SRTERRPEGGRMKTRTSKRYVLLDEETTDLLQKAMMFARQIAKESNRILGQNDFIFVDEG 297

Query: 258 ----NNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGW 313
                   + +     +  FK  + ++ ++ + H +R F AT    AG +   + A  G 
Sbjct: 298 ANLKKRRGEPIKYAHIATIFKKVSAESKIHATPHMMRHFFATQGQIAGVSIEHMAAALGH 357

Query: 314 KTVDQAETYTKGAD 327
            T    + YT   D
Sbjct: 358 STSYMTQQYTHIKD 371


>gi|115374267|ref|ZP_01461552.1| phage integrase family protein [Stigmatella aurantiaca DW4/3-1]
 gi|310818193|ref|YP_003950551.1| phage integrase family protein [Stigmatella aurantiaca DW4/3-1]
 gi|115368688|gb|EAU67638.1| phage integrase family protein [Stigmatella aurantiaca DW4/3-1]
 gi|309391265|gb|ADO68724.1| Phage integrase family protein [Stigmatella aurantiaca DW4/3-1]
          Length = 402

 Score = 89.3 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 40/230 (17%), Positives = 70/230 (30%), Gaps = 28/230 (12%)

Query: 119 IRSGVESRKHTPS------SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR-KTEGI 171
            R+ +  RK T +      S    LT +  L   A  Q  +   P   V+  K+      
Sbjct: 145 TRAAIRKRKDTEAKPLSLKSINNVLTVVSRLLAVAEEQRVIPQAP--RVKLFKKLPKPPF 202

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ---- 227
              + E++++  +      + R      L +GLR  +        L      +  +    
Sbjct: 203 DFLSFEEVERLIAASEP--EWRALLLVALKTGLRQGELIGLQWADLDLQRGKLHVRRTIW 260

Query: 228 -------KTGTIITVELPDGFMKLLAM-TPIGKETFFINNDKQKMNATQFSIWFKAKATK 279
                  K G   TV+LP    + L     +     F   D + +               
Sbjct: 261 RGVVGLPKGGRERTVDLPASAGEALKGHRHLRGPYVFCQPDGKALTPGLLKHPLLRALRM 320

Query: 280 AGVNK-----SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           AGV++       H +R    +  A  G     +    G  T++  E Y  
Sbjct: 321 AGVSREQGGIGWHDLRHTYGSHLAMRGVPLKAIQELMGHVTIEMTERYAH 370


>gi|326387918|ref|ZP_08209524.1| phage integrase [Novosphingobium nitrogenifigens DSM 19370]
 gi|326207964|gb|EGD58775.1| phage integrase [Novosphingobium nitrogenifigens DSM 19370]
          Length = 298

 Score = 89.3 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 46/272 (16%), Positives = 89/272 (32%), Gaps = 27/272 (9%)

Query: 85  GSLAVNSRISFESYFDQII---RKSGDFDYRKI------TTKHIRSGVESRKHTPSSAIQ 135
              + ++  ++ +   ++I    + G   + ++        +H  +          SA +
Sbjct: 18  RRRSPHTVRAYVATARRLITRLEQDGALHWARLGALDATALRHYLADRREHGIGNVSAAR 77

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED-MQQFKSFWSEGSQPRL 194
            L++++    +A  Q  +       +  P+ K    RP T +D +   ++   + ++P +
Sbjct: 78  ELSALKAFIAFARTQADMPPG-APRLRGPRVKKGLPRPITPDDAVNLAETVAEDATEPWI 136

Query: 195 A------FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248
           A         L  SGLR  ++       L      + T K G    V L       L   
Sbjct: 137 AARDTAVLLLLYGSGLRIGEALALPAGILPAGESMVITGKGGRQRLVALLPVVRAALERY 196

Query: 249 PI-------GKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISAD 299
                      +  F       ++A              G+    + H +R   AT    
Sbjct: 197 AALVPWPLGKDDPLFRGAKGGPLSAGMIRRAMARARVALGLPPSATPHALRHSFATHLLG 256

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           AGA    L    G  ++   + YTK  D  RL
Sbjct: 257 AGADLRSLQELLGHASLSSTQIYTK-VDAARL 287


>gi|320156126|ref|YP_004188505.1| integron integrase IntI4 [Vibrio vulnificus MO6-24/O]
 gi|326424001|ref|NP_761248.2| Integron integrase IntI4 [Vibrio vulnificus CMCP6]
 gi|319931438|gb|ADV86302.1| integron integrase IntI4 [Vibrio vulnificus MO6-24/O]
 gi|319999378|gb|AAO10775.2| Integron integrase IntI4 [Vibrio vulnificus CMCP6]
          Length = 320

 Score = 89.3 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 51/302 (16%), Positives = 90/302 (29%), Gaps = 59/302 (19%)

Query: 81  SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HTPSSAIQFLT 138
                  A  +  ++ S+  Q I          +  KH+   +         ++  Q L 
Sbjct: 12  HMRTRHYATKTIQAYISWIKQYIYFHRMAHPSTLNEKHVEEFLTHLAVEQKVAAKTQALA 71

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPK--RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196
              VLF +   +EY        ++  K     +     TK +++ F        + +L  
Sbjct: 72  LNSVLFLY---REYFRTPLNNEIKFQKSLLDRKLPVVLTKPELRAFIQHIDP--RYKLHI 126

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLL--------- 245
             L  SGLR  +  R  +Q +  +  +++    K G   TV L      LL         
Sbjct: 127 MLLYGSGLRVMECVRLRIQDVDYHYGALRVWQGKGGKNRTVTLAKELYPLLKEQEALALR 186

Query: 246 ----AMTPIGKETFFINN---------------------------------DKQKMNATQ 268
                    G    ++++                                  +  +N   
Sbjct: 187 YYQKDRITAGYAGVWLSSSLQRKYQGAEMDFNWHYLFPSDRLSRDPESDLLRRHHINEQA 246

Query: 269 FSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
                K  A  AG+ KS   H +R   AT   ++GA    +    G   V   + YT   
Sbjct: 247 LQRAVKRAAKDAGITKSISCHTLRHSFATHLLESGADIRTVQEQLGHSDVKTTQIYTHVL 306

Query: 327 DR 328
           +R
Sbjct: 307 ER 308


>gi|261250897|ref|ZP_05943471.1| integron integrase IntI4 [Vibrio orientalis CIP 102891]
 gi|260937770|gb|EEX93758.1| integron integrase IntI4 [Vibrio orientalis CIP 102891]
          Length = 320

 Score = 89.3 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 88/302 (29%), Gaps = 55/302 (18%)

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLT 138
           ++       A  +  ++ ++  + +         ++  + +   +         A +   
Sbjct: 10  KEHMRARHYATKTIDAYINWISRFVTFHHMAHPSRLDERSVEEFLTHLALHDKVAAKTQA 69

Query: 139 SMRVLFKWAVRQEYVAI--NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196
                  +  R  Y     N     +      +     TK + +QF        + +L  
Sbjct: 70  LALNAINFLYRDFYRTPLENDMKFQKSL-LDRKLPVVLTKHETRQFLKHIDP--RYKLHI 126

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLAMTPIGKET 254
             L  SGLR  ++ R  V  +  +  +++    K G    V L    + +L       + 
Sbjct: 127 MLLYGSGLRVMEAVRLRVHDIDYDYSAVRIWQGKGGKNRVVTLAKELVPMLNEQQALAQR 186

Query: 255 F-------------FINN---------------------------------DKQKMNATQ 268
           +             ++N                                   +  +NA  
Sbjct: 187 YYKKDMNTPGYAGVWLNQSLQKKYRGAELEFKWHYLFPSNKLSTDPETGLVRRHHINAVA 246

Query: 269 FSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
                K  A +AG++K  + H +R   AT   ++GA    +    G   V   + YT   
Sbjct: 247 LQRAVKRTAKEAGIDKHVTCHTLRHSFATHLLESGADIRTVQEQLGHSDVRTTQIYTHVL 306

Query: 327 DR 328
           +R
Sbjct: 307 ER 308


>gi|239624324|ref|ZP_04667355.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239520710|gb|EEQ60576.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 463

 Score = 89.3 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 64/354 (18%), Positives = 104/354 (29%), Gaps = 84/354 (23%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTK----HIRSGV- 123
           TL  L+ EY       + A+++  S      + I    GD     IT +    + R  + 
Sbjct: 60  TLNDLLDEYMSIYGVNTWAMSTYESRRGLARNYITPIIGDMLLSDITPRMMDKYYRDLLS 119

Query: 124 ------ESRKHT-----PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
                  +RK T     P +  +    +R  F  AVR E ++ NP L+   PK + +   
Sbjct: 120 VKTVSVNNRKPTSEYLTPHTVREIHKLLRSAFNQAVRWELISRNPVLNATLPKEEHKERD 179

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--------------- 217
            WT E + +      +     LA        LR  +        +               
Sbjct: 180 IWTAETLSKAMEVCDDPILS-LALNLAFSCSLRIGEMLGLTWDCIDIAPQSIENGSAYIF 238

Query: 218 -----------------QNNIFS--------------IKTQKTGTIIT-VELP------- 238
                               +                +K  KT T I  V LP       
Sbjct: 239 VNKELQRVTRGALDDLSDKGVIKKFPPCIASTHTALVLKEPKTKTSIRRVYLPKTVAYML 298

Query: 239 -------DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVR 290
                  D  M L     I     F +++ + M +   +  F     + G+     H +R
Sbjct: 299 VERKKEIDELMDLFGDEYIDNNLVFCSSNGRPMESQVINRAFNKLIKENGLPHVVFHSLR 358

Query: 291 KFSATI-SADAGATAHELMATYGWKTVDQ-AETYTKGADRIRLGIKNSRRISSV 342
             S T      G     +    G   V   A+ Y+   D  R    N++R+   
Sbjct: 359 HSSITYKLKLNGGDMKSVQGDSGHAQVKMVADVYSHIIDEDR--CINAQRLEEA 410


>gi|239828723|ref|YP_002951346.1| integrase family protein [Geobacillus sp. WCH70]
 gi|239809016|gb|ACS26080.1| integrase family protein [Geobacillus sp. WCH70]
          Length = 304

 Score = 89.3 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 45/290 (15%), Positives = 86/290 (29%), Gaps = 39/290 (13%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----KHT 129
           ++ EY         + N+ IS+ +  +Q ++         +T+  IR  ++      +  
Sbjct: 1   MLHEYETYLQEKGFSPNTVISYLNDVNQFLKDLHLRPGDYVTSADIRKWIQQMLNPVEGK 60

Query: 130 P---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP---WTKEDMQQFK 183
           P   S+  + L S+R  + WAV    +  NP   ++  K   E        T+E+ +   
Sbjct: 61  PLAISTINRRLNSLRSFYAWAVAHHKLEQNPMRDIQDLKSADEENEKIMWLTEEEFEDLL 120

Query: 184 SF-------------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
                            +  + R     L Y+GLR  +     +  L   +  I+    G
Sbjct: 121 QRMRKKPVQSRGVDPEEKYRRDRAVVYLLTYAGLRVEELSNLKLTDLDLEMRRIRIVGKG 180

Query: 231 TII-TVE----LPDGFMKLLAMTP---------IGKETFFINNDKQKMNATQFSIWFKAK 276
             + TV     L       LA                  F +    K +        ++ 
Sbjct: 181 MKVRTVPISNILLAELEDWLAFRAQMAKKKPHVATSPYVFYSQRSPKFSVRGIQRMIESY 240

Query: 277 ATKAGVNKSAHGVRKFSATISADA-GATAHELMATYGWKTVDQAETYTKG 325
           +       + H  R         A      ++    G   +     Y K 
Sbjct: 241 SLP-NKKLTPHMFRHTFCKWMLKATNNDIEKVRRLAGHSNIATTSRYLKD 289


>gi|153005656|ref|YP_001379981.1| phage integrase family protein [Anaeromyxobacter sp. Fw109-5]
 gi|152029229|gb|ABS26997.1| phage integrase family protein [Anaeromyxobacter sp. Fw109-5]
          Length = 451

 Score = 89.3 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 39/259 (15%), Positives = 85/259 (32%), Gaps = 26/259 (10%)

Query: 86  SLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGV-----ESRKHTPSSAIQFLTS 139
            L  ++  ++ES F   +    G      I  + ++        +   +   S    LT+
Sbjct: 117 RLKPSTAEAYESVFRTHLEPTFGSLRLDAIGDELVQRFKGELVEDEMANK--SINNVLTA 174

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199
           + V+ K AV  + +   PC  +   K +   +  +   +  ++    +    PR+    L
Sbjct: 175 LSVMLKRAVDWKVIDAMPCR-IRLLKWELVEVPFYDFAEY-RYLVEGAAAIDPRIELLVL 232

Query: 200 LYS--GLRCSDSCRAGVQHLQNNIFSIKTQ-----------KTGTIITVELPDGFMKLLA 246
           L    GLR  ++       +     ++  Q           K G    + L +   + L 
Sbjct: 233 LGGDAGLRRGETIALEWTDVDLRRRTVHVQRSSWNGHVTLPKGGRSRRLPLTERLAEALR 292

Query: 247 -MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGAT 303
               +        +        +  +W +    +A +  +   H +R    +  A  GAT
Sbjct: 293 SHRHLKGPRVLYYDGGASPTNKEIRMWVQRAQRRAVLPATGAYHILRHTFCSHLAMQGAT 352

Query: 304 AHELMATYGWKTVDQAETY 322
           A  +    G + +   + Y
Sbjct: 353 AKAIQELAGHQDLTTTQRY 371


>gi|15924992|ref|NP_372526.1| integrase [Staphylococcus aureus subsp. aureus Mu50]
 gi|49484247|ref|YP_041471.1| integrase [Staphylococcus aureus subsp. aureus MRSA252]
 gi|118725054|ref|YP_908790.1| integrase [Staphylococcus phage phiNM3]
 gi|156980319|ref|YP_001442578.1| integrase [Staphylococcus aureus subsp. aureus Mu3]
 gi|253729788|ref|ZP_04863953.1| phage integrase [Staphylococcus aureus subsp. aureus USA300_TCH959]
 gi|255006790|ref|ZP_05145391.2| integrase [Staphylococcus aureus subsp. aureus Mu50-omega]
 gi|258434312|ref|ZP_05688713.1| integrase [Staphylococcus aureus A9299]
 gi|297589939|ref|ZP_06948579.1| integrase [Staphylococcus aureus subsp. aureus MN8]
 gi|14247775|dbj|BAB58164.1| integrase [Staphylococcus aureus subsp. aureus Mu50]
 gi|49242376|emb|CAG41088.1| integrase [Staphylococcus aureus subsp. aureus MRSA252]
 gi|104641819|gb|ABF73161.1| integrase [Staphylococcus phage phiNM3]
 gi|156722454|dbj|BAF78871.1| integrase [Staphylococcus aureus subsp. aureus Mu3]
 gi|253726523|gb|EES95252.1| phage integrase [Staphylococcus aureus subsp. aureus USA300_TCH959]
 gi|257849260|gb|EEV73241.1| integrase [Staphylococcus aureus A9299]
 gi|269941477|emb|CBI49874.1| integrase [Staphylococcus aureus subsp. aureus TW20]
 gi|297577067|gb|EFH95781.1| integrase [Staphylococcus aureus subsp. aureus MN8]
          Length = 345

 Score = 89.3 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 50/325 (15%), Positives = 110/325 (33%), Gaps = 26/325 (8%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT--TLKWLIS 76
           GK   Y  K  G+R R               A +    K   + S        TL+    
Sbjct: 8   GKKWQYEFKHEGKRYRKKGFRTK------REANSAGLDKLNELRSGFNIDNYITLEEYFE 61

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRSGVE--SRKHTPSSA 133
            + K+     +  N+   + +    I + K G  +  KI  +  +  +   S++H   + 
Sbjct: 62  NWIKTYKQPVVKENTYRHYRNALQHIQKHKIGKMELSKINRQVYQKFINDYSKEHAKETI 121

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSV-----ERPKRKTEGIRPWTKEDMQQFKSFWSE 188
            +   ++R     A+    +  NP   V     +  K + E     T+ ++ +      +
Sbjct: 122 RKTNGAIRSALDDALYDGLIFKNPAYKVNYKAGKPTKSEQEKFISVTEYEILK-DHVRKK 180

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTG-TIITVELPDG----F 241
            ++  LA   ++ +G R S +    ++H+    N   I  +KT  +   + +        
Sbjct: 181 RTRSSLALFIMICTGCRVSGARNIKIEHINQVKNTIFIDERKTNTSPRYISIAKSDMKHI 240

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADA 300
           M +++   I  + +        +N    +   K+      +   ++H +R    +     
Sbjct: 241 MDVISTFAISYDGYIFKEGGSIINLHAINNALKSACRVNNIPIITSHALRHTHCSYLLAK 300

Query: 301 GATAHELMATYGWKTVD-QAETYTK 324
           G + H +    G K +      Y+ 
Sbjct: 301 GVSIHYISKRLGHKNIAITTSVYSH 325


>gi|294012925|ref|YP_003546385.1| putative integrase [Sphingobium japonicum UT26S]
 gi|292676255|dbj|BAI97773.1| putative integrase [Sphingobium japonicum UT26S]
          Length = 345

 Score = 89.3 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 58/341 (17%), Positives = 106/341 (31%), Gaps = 43/341 (12%)

Query: 12  TKERTRHGKIIYYFR----KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYI----NS 63
            + R +HG  IYY R     G  + I   +   ++   A    +     K  +      +
Sbjct: 4   IRTRGKHG--IYYIRGSVGLGKKKIIVKEFSTGTSDRDAAAHLMAEHETKLRHRLMFGPA 61

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK--HIRS 121
                 T+      Y   A     +   R        ++    GDF  R+      H R 
Sbjct: 62  ALVAQGTIAQAFDSYLTKAKPPCASDVLR------IGKLNGLIGDFSLREPKQAWEHFRR 115

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
              +  H P+   ++ +  +      V  E   + P L ++      E +R  +KED  +
Sbjct: 116 AYLT-GHDPAGQDRYRSVFQAAIN--VYHELHDL-PPLRIKAIPFNNERVRFLSKEDRDR 171

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ----HLQNNIFSIKTQKTGTIITVEL 237
             + +S   QP      L + G R   + +         ++     +   K   I +V +
Sbjct: 172 LIAAYSPHIQP--IITLLAFHGPRIQTALQLPWGVNGVDMKEGSIRLNHTKNAIIRSVPM 229

Query: 238 PDGFMKLLAM-----TPIGKETFFINNDKQKM---------NATQFSIWFKAKATKAGV- 282
               M +L               F+N   +                         +AGV 
Sbjct: 230 HPRVMDVLRPIWEKQGQPTTGHVFLNRFGKPYQDTRKAKIPGGNPIKNQHATACKRAGVE 289

Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           + + H  R   A+    AG     +M   GWK++   + Y+
Sbjct: 290 DFTVHDWRHHWASHCVMAGIDLITIMNMGGWKSLRMVQRYS 330


>gi|262384293|ref|ZP_06077428.1| integrase [Bacteroides sp. 2_1_33B]
 gi|262293996|gb|EEY81929.1| integrase [Bacteroides sp. 2_1_33B]
          Length = 310

 Score = 89.3 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 44/277 (15%), Positives = 96/277 (34%), Gaps = 31/277 (11%)

Query: 96  ESYFDQIIRK-----SGDFDYRKITTKH---IRSGVESRKHTPSSAIQFLTSMRVLFKWA 147
           +SY D +          +  Y  I  +     ++ +  R    ++   ++  +R ++  A
Sbjct: 27  KSYLDALRSFKCFCGMEEIPYAYIDKERLLLYQAWLSKRGCMRNTVSTYMRRIRHIYNLA 86

Query: 148 VRQEYVA--INPCLSVERPKRKTEGIRPWTKEDMQQFK---SFWSEGSQPRLAFEFLL-Y 201
           V    V+   N    V     +++  +    + ++          E  + +L F  +  +
Sbjct: 87  VEAGEVSYIPNLFKGV-FTGVESKRKKALPLDSLRSLMGTPRVEPEMRRTQLCFCLMFSF 145

Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG----FMKLLAMTPIGKETFFI 257
           SG+   D      +++++ + S   QK+G+ I VE+P        +L   T       F 
Sbjct: 146 SGMAFVDFAHLRKENVKDGVLSYHRQKSGSFIRVEIPADVRLLLDELAVCTDKDSPYLFP 205

Query: 258 NNDKQKMNATQFS------IWF-KAKATKA-----GVNKSAHGVRKFSATISADAGATAH 305
               +K     ++      + F +   + A     G   +++ +R   AT   +      
Sbjct: 206 FLSGKKTGEAAYAEYNGALLRFNRDLRSLAETCGVGEPVTSYTIRHSFATTLKEQDVPIE 265

Query: 306 ELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
            +    G  ++   + Y K     RL   N     SV
Sbjct: 266 MISELLGHTSIKTTQIYLKSFSLERLSAVNRACFESV 302


>gi|150006793|ref|YP_001301536.1| integrase / site-specific recombinase [Parabacteroides distasonis
           ATCC 8503]
 gi|150007201|ref|YP_001301944.1| integrase / site-specific recombinase [Parabacteroides distasonis
           ATCC 8503]
 gi|149935217|gb|ABR41914.1| integrase / site-specific recombinase [Parabacteroides distasonis
           ATCC 8503]
 gi|149935625|gb|ABR42322.1| integrase / site-specific recombinase [Parabacteroides distasonis
           ATCC 8503]
          Length = 310

 Score = 89.3 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 47/287 (16%), Positives = 99/287 (34%), Gaps = 36/287 (12%)

Query: 90  NSRISFESYFDQIIRKSGD--FDYRKITT---KHIRSGVESRKHTPSSAIQFLTSMRVLF 144
           +S  S++   +  IR SG     Y  I     +   + +  +    ++   ++  +R ++
Sbjct: 24  SSAKSYQDAMNSFIRYSGTDRIPYTYINKDTLRRYEAYLLEKGCMRNTVSTYIRRLRCIY 83

Query: 145 KWAVRQEYVAINPCL------SVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR---LA 195
             AV     A  P L       VE  ++K+         D+ +  +   +G + R   L 
Sbjct: 84  NKAVENGEAAFIPSLFKGVFTGVESQRKKS-----LPLGDLNRLMTVPVKGEKLRKTQLT 138

Query: 196 FEFLL-YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI---- 250
              +  Y G+   D       +++N I     QKTGT + +E+ D    +          
Sbjct: 139 LCLMFQYGGMSFVDFAHLNRGNIKNGILDYNRQKTGTSMRLEVLDTAEAMYKELAGERGG 198

Query: 251 GKETFFINNDKQK----------MNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISA 298
           G    F      K             ++F+   K     AG+  + +++ +R   A    
Sbjct: 199 GSGYLFPFLSGTKNGHEEYLEYNAALSRFNRNLKTLKEVAGIASDVTSYTIRHSFAMALK 258

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345
           +       +    G K++   + Y +     ++ + N     +V + 
Sbjct: 259 EQNVPIEMISELLGHKSIKTTQIYLRSFSLEKMTVVNKSCFENVYNY 305


>gi|257891971|ref|ZP_05671624.1| phage integrase [Enterococcus faecium 1,231,410]
 gi|257828331|gb|EEV54957.1| phage integrase [Enterococcus faecium 1,231,410]
          Length = 344

 Score = 89.3 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 47/312 (15%), Positives = 109/312 (34%), Gaps = 40/312 (12%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDF 109
           +     ++    S  +K    +++   + ++    ++  ++  S +  FD  I++  GD 
Sbjct: 1   MEADIQEKGLQASTAQKSKKFEYVYGLWFENYK-KTVKESTWSSTKQIFDTHILKVFGDK 59

Query: 110 DYRKITTKHIRSGVESRKHT-PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK--- 165
              KI     +  V +   + P    +       +F +A   + +  NP   V  P+   
Sbjct: 60  FIDKIDVFFCQEAVNTWSDSHPKIFKKIKNYTSNVFDYAASLQIITSNPMKLVSIPRGEA 119

Query: 166 --RKTEGIRPWTKEDMQQFKSFWSEGSQPR-LAFEFLLYSGLRCSDSCRAGVQHLQ---- 218
              + + I  +TKE++ +F          R L F  L ++G+R  ++       +     
Sbjct: 120 LDIEDKNIEFYTKEELIEFLEAIRNDDDERYLFFSLLAFTGIRKGEAFALTWSDIDFKSK 179

Query: 219 ------------NNIFSIKTQKTGT-IITVELPDGFMKLLA--------MTPIGKETFFI 257
                            + T K+ +    + L +  + LL         +  I  E    
Sbjct: 180 TLNINKTVTRGYQGRLIVNTPKSKSGKRKIYLDNDLISLLRKYYTKNKTIVTIQSENLIF 239

Query: 258 NNDK----QKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGW 313
           ++D       ++ +  ++ +K          + HG R   A++  ++GA+  ++    G 
Sbjct: 240 HHDGLLYNPTVSRSWLNVIYKHHPELTK-RITTHGFRHTHASLLFESGASLKDVQERLGH 298

Query: 314 KTVDQAE-TYTK 324
             +      YT 
Sbjct: 299 ADIQTTSNIYTH 310


>gi|237724706|ref|ZP_04555187.1| integrase [Bacteroides sp. D4]
 gi|229436901|gb|EEO46978.1| integrase [Bacteroides dorei 5_1_36/D4]
          Length = 371

 Score = 89.3 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 43/214 (20%), Positives = 75/214 (35%), Gaps = 12/214 (5%)

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           T +SA  + ++ R   K   R   +  N    +E+ + +       + ED+        +
Sbjct: 155 TQNSASGYWSTFRGFLKILYRNRLIKSNINDFLEKIEPEDVVKDYLSVEDLYCLAETPCK 214

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHL-----QNNIFSIKTQKTGTIITVELPDGFMK 243
               + A  F   + LR SD      + +             TQKT T   + + D  +K
Sbjct: 215 IPVLKTASLFSCLTSLRLSDILTLCWEEIVDFAAGGKCVHTITQKTKTEDIIPISDEALK 274

Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301
           L+  +P  K   F    K+           K     AG+ K  + H  R+  AT+   AG
Sbjct: 275 LIEYSPEKKGLVF-KGLKRCWTQVP----MKEWIRSAGITKNITFHSYRRTFATLQGAAG 329

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335
                + +    K++   + Y K  D  +    N
Sbjct: 330 TDIRTIQSMMAHKSITTTQRYMKVVDSNKREASN 363


>gi|167572241|ref|ZP_02365115.1| integrase family protein [Burkholderia oklahomensis C6786]
          Length = 591

 Score = 89.3 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 62/370 (16%), Positives = 109/370 (29%), Gaps = 72/370 (19%)

Query: 39  HESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESY 98
           +++   P Y      +        +      T+   I  +        L+  +   ++  
Sbjct: 201 YDAIEDPLYRPIGGSTEGVARADAATIPNGITIDEAIKRFENDPQRAKLSRKNLDGYQHS 260

Query: 99  FDQIIRKSG-DFDYRKITTKHIRSGVESRKHTPSSAIQF--------------------- 136
           F  +    G +     +   H R   E   H P++A +                      
Sbjct: 261 FRLLREIVGGNMPLGAVNRDHAREVQEVFAHLPANATKRFPGMTLVAAAEHAKKSGIPPI 320

Query: 137 --------LTSMRVLFKWAVRQEYVAINPCLSVERP---KRKTEGIRPWTKEDMQQFKSF 185
                   L +    F WAVR+  +   P   ++     + K EG +P++  D+ +  S 
Sbjct: 321 SAKTAEVQLGNFSSFFSWAVREHLIDKTPAAGLQPLQEKRSKDEGRQPFSDADLVKLFSD 380

Query: 186 WSEGSQPRLAF----------EFLLYSGLRCSDSCRAGVQH--LQNNI--FSIKTQ---- 227
               +  R                LY G R ++ C+  V    + N I     + +    
Sbjct: 381 DLFRAPYRRVAPRWLGRYWVPLLALYHGARLNELCQLEVADAGVANGIPFLHFREESAAD 440

Query: 228 -----KT-GTIITVELPDGFMKL------LAMTPIGKETFF--INNDKQKMNATQFSIWF 273
                KT  +   + +     +L       A    G    F  +        +  FS WF
Sbjct: 441 EEKHLKTRNSERVIPIHPVLQQLGFVEYVEATRKAGHARLFPSLTKSATGYYSDNFSKWF 500

Query: 274 KAKATKAGVNKS---AHGVRKFSATISADAGATAHEL-MATYGWK--TVDQAETYTKGAD 327
                K GV  S    H  R      +A A     E+  A  GW       +E Y KG  
Sbjct: 501 GRFCDKCGVTDSRLAFHSFRHGF-RDAARAADIPREIAQALGGWSDGDDSTSEDYGKGYT 559

Query: 328 RIRLGIKNSR 337
             R   + ++
Sbjct: 560 LSRKADELAK 569


>gi|71737058|ref|YP_274303.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. phaseolicola 1448A]
 gi|71557611|gb|AAZ36822.1| site-specific recombinase, phage integrase family [Pseudomonas
           syringae pv. phaseolicola 1448A]
          Length = 338

 Score = 89.3 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 45/281 (16%), Positives = 86/281 (30%), Gaps = 32/281 (11%)

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE--SR 126
            T    + EY        L+  +  S +S    +    G+   R I T  I + +   S+
Sbjct: 51  RTFADWLGEYELIYTERGLSAQTTRSMKSRLKTVNSAFGEKFVRNIRTMDIATFLATFSK 110

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
                 +  + + +R +F  A+   +  +NP  + +  + K +  R  + E  +   +  
Sbjct: 111 AGKAPMSKAYRSLLRDVFNEAIAAGWCDLNPVDATKPARSKVKRAR-LSLELWKAAHAAT 169

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK--- 243
                 R A E  L +G R  D      +   +    +   KTG  + +           
Sbjct: 170 DRPWLKR-AMELALLTGQRRDDIGSMLFKDEHDGFLHVIQSKTGARLRISTSLRLEAIGL 228

Query: 244 -------------LLAMTPIGKETFFINNDKQKMNATQFSIWFKAK----ATKAGVNK-- 284
                        L         T  +      +     ++ F       A   G++   
Sbjct: 229 DLSSVIKSCRDRVLSKHLVHHTRTVAVAKAGNPIKLNTLTLAFAEARDKGAAALGIDLGA 288

Query: 285 ---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
              S H +R  +A + A  G    +L    G +     E Y
Sbjct: 289 NPPSFHEMRSLAARLHALEGRDPQKL---LGHRNAAMTEMY 326


>gi|37680125|ref|NP_934734.1| super-integron integrase IntIA [Vibrio vulnificus YJ016]
 gi|37198871|dbj|BAC94705.1| super-integron integrase IntIA [Vibrio vulnificus YJ016]
          Length = 320

 Score = 89.3 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 51/302 (16%), Positives = 90/302 (29%), Gaps = 59/302 (19%)

Query: 81  SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HTPSSAIQFLT 138
                  A  +  ++ S+  Q I          +  KH+   +         ++  Q L 
Sbjct: 12  HMRTRHYATKTIQAYISWIKQYIYFHRMAHPSTLNEKHVEEFLTHLAVEQKVAAKTQALA 71

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPK--RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196
              VLF +   +EY        ++  K     +     TK +++ F        + +L  
Sbjct: 72  LNSVLFLY---REYFRTPLNNEIKFQKSLLDRKLPVVLTKPELRAFIQHIDP--RYKLHI 126

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLL--------- 245
             L  SGLR  +  R  +Q +  +  +++    K G   TV L      LL         
Sbjct: 127 MLLYGSGLRVMECVRLRIQDIDYHYGALRVWQGKGGKNRTVTLAKELYPLLKEQEALALR 186

Query: 246 ----AMTPIGKETFFINN---------------------------------DKQKMNATQ 268
                    G    ++++                                  +  +N   
Sbjct: 187 YYQKDRITAGYAGVWLSSSLQRKYQGAEMDFNWHYLFPSDRLSRDPESDLLRRHHINEQA 246

Query: 269 FSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
                K  A  AG+ KS   H +R   AT   ++GA    +    G   V   + YT   
Sbjct: 247 LQRAVKRAAKDAGITKSISCHTLRHSFATHLLESGADIRTVQEQLGHSDVKTTQIYTHVL 306

Query: 327 DR 328
           +R
Sbjct: 307 ER 308


>gi|329919718|ref|ZP_08276674.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners SPIN 1401G]
 gi|328937237|gb|EGG33663.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners SPIN 1401G]
          Length = 329

 Score = 89.3 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 33/248 (13%), Positives = 78/248 (31%), Gaps = 14/248 (5%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHTPSSAIQFLTSMRVL 143
           +  S   + +  + +  K    + R++ T  +R+ +    + +  +  +       +   
Sbjct: 68  SEKSLTYYRATIEVMTTKI-KKNVREMETDDLRTYLTEYQQEKNSSKVTVDNIRRILSSF 126

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203
           F W   + Y+  +P   + + K        +T E +++ +    E ++     + L  +G
Sbjct: 127 FSWLEDENYILKSPARRIHKVKAALTIKETYTDESLEKMRDNCEE-ARDLALIDMLASTG 185

Query: 204 LRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG-----FMKLLAMTPIGKETFFIN 258
           +R  +        +            G+   +   D       +  L          F++
Sbjct: 186 MRVGELVLLNRDDINFEERECVVFGKGSKERMVYFDARTKIHLLTYLRERTDDNPALFVS 245

Query: 259 NDKQKMNAT--QFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKT 315
                            +    K  + K   H  R+  AT++ D G    +L    G K 
Sbjct: 246 LRSPHERLKIGGVECRLRELGNKLNIEKIHPHKFRRTLATMAIDKGMPIEQLQQLLGHKR 305

Query: 316 VDQAETYT 323
           +D    Y 
Sbjct: 306 IDTTLQYA 313


>gi|256845656|ref|ZP_05551114.1| DNA integration/recombination/invertion protein [Fusobacterium sp.
           3_1_36A2]
 gi|256719215|gb|EEU32770.1| DNA integration/recombination/invertion protein [Fusobacterium sp.
           3_1_36A2]
          Length = 355

 Score = 89.3 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 51/301 (16%), Positives = 104/301 (34%), Gaps = 22/301 (7%)

Query: 41  STFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI--SEYRKSAHWGSLAVNSRISFESY 98
             F  AY      +    E      + P T K L+    Y+        A  S  ++ SY
Sbjct: 49  EAFRIAYF-----NNKISEDKEKGIEVPKTHKTLLFEDLYKIWLENKKPAKTSLRNYTSY 103

Query: 99  FDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158
           F    +K    D + I    ++  +     +  +     +  + LF +A+  ++      
Sbjct: 104 FSN-SKKLHKLDIKNINGILLQKILNELDLSKGTLRNLKSFWKQLFDFALLNDFCQKEYV 162

Query: 159 LSVERP-----KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL---YSGLRCSDSC 210
             ++ P     K+ ++  R +  +D+Q+      +        + +L   Y+GLR S+  
Sbjct: 163 SFLKLPNEEKGKKTSDRNRIFAADDLQKLWDNLYKDIDRFKILDIILVDCYTGLRPSELL 222

Query: 211 RAGVQHL--QNNIFSIKTQKTGTIIT-VELPDGFMKLLA-MTPIGKETFFINNDKQKMNA 266
               + +  +     I   K+   I  + + D    ++      GKE  F   D  K+  
Sbjct: 223 NIKNERVFLEERYIDITKSKSKAGIRKLPISDKIYDIIKKRYDPGKEFLFTRYDGAKLTY 282

Query: 267 TQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTK 324
             +   F+       +   +AH  R   AT+ ++A      ++   G  +    +E Y  
Sbjct: 283 DTYDYEFRELMKDLEIEYHTAHDCRHTFATLLSNAEIDKEIIIKLTGHSSYKITSEKYIH 342

Query: 325 G 325
            
Sbjct: 343 K 343


>gi|238927807|ref|ZP_04659567.1| prophage LambdaCh01, site-specific recombinase phage integrase
           family protein [Selenomonas flueggei ATCC 43531]
 gi|238884354|gb|EEQ47992.1| prophage LambdaCh01, site-specific recombinase phage integrase
           family protein [Selenomonas flueggei ATCC 43531]
          Length = 377

 Score = 89.3 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 60/375 (16%), Positives = 121/375 (32%), Gaps = 61/375 (16%)

Query: 21  IIYYFR-------KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
           + Y +R           +R  L       F+      L  +  ++E +    +K  TL  
Sbjct: 6   VRYNYRDPATGQIVRKKKRGFLRRIDAEEFL------LQINKAQQEGVFLTPEKL-TLST 58

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132
            ++ +  S    ++  ++   +E+    ++I  +G  D + IT   I     +      +
Sbjct: 59  YLNTWLSSYAKVNVKASTYAQYEAIVKKRLIPWAGGCDIKAITPMQIDEFYATLLQQGRA 118

Query: 133 -------AIQFLTSMRVLFK---WAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQQ 181
                  A   L   RVL +    AV++  +  NP LSV   PK K      ++ E+++ 
Sbjct: 119 DGKGGLSAKSVLYIHRVLNEALGHAVQKGLLVKNPLLSVTNIPKAKKFKASAYSAEEIRS 178

Query: 182 F-KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN---------------IFSIK 225
             ++  +E S  + A       GLR  +        +  +                    
Sbjct: 179 LLEAAAAENSFWQAAIALAAICGLRRGECLGLKWSKIDFDSQSITIDEQVIEIHHKIHFS 238

Query: 226 TQK-TGTIITVELPDGFMKLLAMTP--------------IGKETFFINNDKQKMNATQFS 270
           T K T +I T+  P     +L                     +      +   +    F+
Sbjct: 239 TPKSTESIRTIHAPAEVFAILKRRKEELDQHKEWLGNAYDEHDLVLCRGNGSPIRPGNFT 298

Query: 271 IWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADR 328
             FK    +  +     H +R   A++   +G          G  ++   A+ YT    +
Sbjct: 299 KAFKDFLARHNMRTIRFHDLRHSCASLMLQSGVAMKTASEILGHSSIAITADLYTHVMQK 358

Query: 329 IRLGIKNSRRISSVV 343
            +   + + +I   V
Sbjct: 359 TK--EEAAGKIGDYV 371


>gi|313897273|ref|ZP_07830817.1| site-specific recombinase, phage integrase family [Clostridium sp.
           HGF2]
 gi|312957994|gb|EFR39618.1| site-specific recombinase, phage integrase family [Clostridium sp.
           HGF2]
          Length = 397

 Score = 89.3 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 60/378 (15%), Positives = 105/378 (27%), Gaps = 61/378 (16%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
            ++ K     G   Y +          P P      P+            E       K 
Sbjct: 24  KYLYKYVDAFGNTKYVYAWRLTP--TDPTPKGKREKPSLRELEQQIRRDIEDGIDSTGKK 81

Query: 69  TTLKWLISEY-RKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRSGVESR 126
            T   L   Y +++A   ++  ++    E     +   K G      I     +      
Sbjct: 82  MT---LCQLYAKQNAQRANVKKSTMKQREQLMRLLKEDKLGARSIDTIKPSDAKEWALRM 138

Query: 127 KHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPC--LSVERPKRKTEGIRPWTKEDMQQ 181
           K      ++      S++  F  A++ + V  NP      E  +  T+     T+E  Q 
Sbjct: 139 KDKGFSYNTINNHKRSLKASFYIAIQDDCVRKNPFDFKLSEVLENDTKEKVALTEEQEQA 198

Query: 182 FKSFWSEGSQPRLAFE---FLLYSGLRCSDSCRAGVQHLQ------------------NN 220
             SF    +     ++    LL +GLR S+ C   V  +                     
Sbjct: 199 LLSFIKTDNVYHKHYDDVLILLKTGLRISELCGLTVADIDFKNEVVIIDHQLLKSKEQGY 258

Query: 221 IFSIKTQKTGTIITVELPDG----FMKLLAMTPIGKET--------FFINNDKQKMNATQ 268
                  K+GT   V L       F +++   P              F+N+  +   A  
Sbjct: 259 YIETPKTKSGTR-QVPLSKETIQAFQRVMKKRPKTDPFVIDGRSNFLFVNHKGKPKVAID 317

Query: 269 FSIWFKAKATKAGVNK--------SAHGVRKFSATISADAGATAHELMATYGWKTVD--- 317
           ++  F     K   +         + H +R    T  A       +L    G   +    
Sbjct: 318 YNALFVRMVKKYNKHHMDNPLPHITPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISITM 377

Query: 318 ----QAETYTKGADRIRL 331
                A   T  ++  RL
Sbjct: 378 NWYAHASIDTAKSEVQRL 395


>gi|300918412|ref|ZP_07135010.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 115-1]
 gi|300414387|gb|EFJ97697.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 115-1]
          Length = 347

 Score = 89.3 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 59/295 (20%), Positives = 92/295 (31%), Gaps = 35/295 (11%)

Query: 55  TPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI 114
           T K+  +    KK   +K  + EY K     +L+ ++   +E     +          ++
Sbjct: 35  TSKKLELFGVVKKTKNIKSYLDEYLKICQNRNLSPSTIGGYEKCLSALSALH-KMHVSEL 93

Query: 115 TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE---------RPK 165
           T   +++ + SRK    +    L+ +R     AV    + INP   V           P 
Sbjct: 94  TPAVLKNWIASRKTKLKTIRNNLSFLRSAIDEAVTDGLLTINPVTLVSASRYHVIDSSPN 153

Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN------ 219
                + P+T  ++       S      L F F   +GLR S+ C      L N      
Sbjct: 154 SDDYEVDPFTPAEISAIYQSCSYPEWENL-FRFAFNTGLRSSELCALRWPDLDNIAKTAH 212

Query: 220 -------NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET---FFIN--NDKQKMNAT 267
                   +      K GT   VEL    +  L            F  +     +   A 
Sbjct: 213 VQAASVVGVLKGTKTKAGTR-KVELNSEALAALQAQKQFTFMKSEFIFSDPKTGEPW-AN 270

Query: 268 QFSIWFKAKA---TKAGVNKS-AHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
             +I  KA      KAGV     +  R   AT     G     L    G K  + 
Sbjct: 271 ADAIRKKAWVPTLKKAGVRYRNPYQTRHTFATRHISQGVNLFWLAGQMGHKGPEM 325


>gi|322419132|ref|YP_004198355.1| integrase family protein [Geobacter sp. M18]
 gi|320125519|gb|ADW13079.1| integrase family protein [Geobacter sp. M18]
          Length = 428

 Score = 89.3 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 47/334 (14%), Positives = 101/334 (30%), Gaps = 54/334 (16%)

Query: 50  ALTGSTPKREYINSPRKKPT-TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD 108
           A   + P       P+  P+ T+  +I+EY       +    + + + SY+  +      
Sbjct: 86  ASIATPPTESKPLEPKVAPSPTIAHIINEYVNDNK-SAWTGKTLLEYGSYWRLLQDVLEV 144

Query: 109 FDYRKITTKHIRSGVESRKHTPSS--------------------------AIQFLTSMRV 142
               ++T + +R   ++    P++                            + LT    
Sbjct: 145 ETVAEVTREEVRKLRDTLCRLPANLYKKHPGKSIKEVLALEGSTPMSTTTVNKLLTLFGS 204

Query: 143 LFKWAVRQEYVAINPCLS--VERPKRKTEGIRPWTKEDMQQFKSFWSEGS--QPRLAF-E 197
           L    V++ Y   NP     V++ KR  E  + +T+ED+++        +    R     
Sbjct: 205 LMIHCVKEGYRRDNPTEGLKVKQKKRADEERKAYTREDLKKMAGALPSPAAKPERYWVPM 264

Query: 198 FLLYSGLRCSDSCRAGVQHLQ----------NNIFSIKTQKTGTIITVELPDGFMK---L 244
             +YSG+R  + C   V  ++          N     + +   +   V +    +    L
Sbjct: 265 VGMYSGMRLGEICGLHVSDVKPVDGVWCFDVNEEGDKRLKTLASTRLVPIHPQLIAKGFL 324

Query: 245 LAMTPIGKETFFINNDKQ------KMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISA 298
             +        + +  ++            +  + +   T   + K+ H +R   A    
Sbjct: 325 AYVETRRSARLWPSLFRRDTDGYCPALGNWYGRFNRKHVTDDPL-KTFHSLRHSFADTLK 383

Query: 299 DAGATAHELMATYGWKTVD-QAETYTKGADRIRL 331
             G     +    G          Y K      L
Sbjct: 384 QLGCQESLISELMGHTNSSITTGRYGKRYQAKVL 417


>gi|254440879|ref|ZP_05054372.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
 gi|198250957|gb|EDY75272.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
          Length = 244

 Score = 89.3 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 39/237 (16%), Positives = 90/237 (37%), Gaps = 21/237 (8%)

Query: 92  RISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQE 151
           R     +    +R        +I+             +PS+A   L S R ++  A R  
Sbjct: 2   RAQLTLHLKDWMR----LPLDEISKAMTVRRHHDMAGSPSAANHVLRSFRTIYNHARRTG 57

Query: 152 YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP--RLAFEFLLYSGLRCSDS 209
            +   P +++E  + K +G      ED++ ++    +   P  R+ +E +L++GLR ++ 
Sbjct: 58  DLPECPTMAIEWFEDKPDGRII---EDLKHWRKTIDDLPNPIHRIFYELILFTGLRKTEV 114

Query: 210 CRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT-PIGKETFFINNDKQKMNATQ 268
                + +Q +   +   K G    + +     ++LA   P+ ++  F          ++
Sbjct: 115 FTLKWEQIQEDRIHLPMTKNGRSFDLPISQLHHEILAPLRPLSRDWVF------PSPKSE 168

Query: 269 FSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
                + +     +  + H  R+  AT++ +AG     +        +    + YT+
Sbjct: 169 SGHITRPER----LKYNPHMHRRTFATVAMEAGVLEEIVGRLLNHTPLSITGQRYTR 221


>gi|169636475|ref|YP_001716016.1| putative integrase/recombinase XerD [Geobacillus
           stearothermophilus]
 gi|169403015|emb|CAP08226.1| putative integrase/recombinase XerD [Geobacillus
           stearothermophilus]
          Length = 304

 Score = 89.3 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 42/290 (14%), Positives = 82/290 (28%), Gaps = 39/290 (13%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----KHT 129
           +++EY         + N+ IS+ +  +             +T   IR  ++      +  
Sbjct: 1   MLNEYVTYLQEKGASPNTIISYTNDLNIFFNDLHIRPGDYVTMADIRKWIQQMLNPAEGK 60

Query: 130 P---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP---WTKEDMQQFK 183
           P   S+  + L ++R  + WAV    +  NP   ++  K   E        T+E+ +   
Sbjct: 61  PLAISTINRRLNALRSFYAWAVEHYKLEQNPMKDIQDLKSADEDNEKIMWLTEEEFEDLL 120

Query: 184 SF-------------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
                            +  + R     L Y+GLR  +     +  L   +  I+    G
Sbjct: 121 HRMRKKPVRSRGVDPEEKYRRDRAVVYLLTYAGLRVEELSNLKLTDLDLEMKRIRIVGKG 180

Query: 231 TII-TVE----LPDGFMKLLAMTP---------IGKETFFINNDKQKMNATQFSIWFKAK 276
             + TV     L       L                   F +    K +        ++ 
Sbjct: 181 MKVRTVPISNILLAELEDWLKFRAEMAKKKSHVAESPYVFYSQRSPKFSVRGIQRMIESY 240

Query: 277 ATKAGVNKSAHGVRKFSATISADA-GATAHELMATYGWKTVDQAETYTKG 325
           +       + H  R         A      ++    G   +     Y K 
Sbjct: 241 SLP-NKKLTPHMFRHTFCKWMLKATNNDIEKVRRLAGHSNIATTSRYLKD 289


>gi|212702736|ref|ZP_03310864.1| hypothetical protein DESPIG_00764 [Desulfovibrio piger ATCC 29098]
 gi|212673793|gb|EEB34276.1| hypothetical protein DESPIG_00764 [Desulfovibrio piger ATCC 29098]
          Length = 350

 Score = 89.3 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 49/358 (13%), Positives = 112/358 (31%), Gaps = 34/358 (9%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT---- 69
           E+ R  K  + +R     R R       +   A+ + +     +   +    ++ +    
Sbjct: 2   EKDRLEKWRFSWRDPATGRTRRRTFTSESERDAFAATMRQVIERERQLKKQARQRSARIS 61

Query: 70  ----TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
               T++ +I  Y            ++ +   +   ++   G    R +T + + +  E+
Sbjct: 62  AQSLTVREIIQLYL---ELQITRPGTKKATAYHCRPLLAMFGTRKARMLTMQDVLAFREA 118

Query: 126 RKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           +       S+    L  +R   +WAV    +A NP   ++ P+ ++    P T  + ++ 
Sbjct: 119 QALRQVGLSTVRLRLGILRSALRWAVTTGRLAANPLDGMKLPRVRSRRASPPTAAEGRKM 178

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCS--DSCRAGVQHLQNNIFSIK---TQKTGTI--ITV 235
                     R      +Y G R    +  R     +  +   +      K        V
Sbjct: 179 MEV--AAPHIRRIIAIGMYCGPRIGPSELFRLRWADVDLDAAQLNMPSASKADGPDGRFV 236

Query: 236 ELPDGFMKLLAMTPIGKETF----FINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289
            L    + L+               I+   +          + +    AG+ +    + +
Sbjct: 237 PLRGDLVALMRRWQDEDSAIGCPWVIHYHGRP--VKSVGAAWHSARRAAGIQRRIVPYSL 294

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVVDSD 346
           R    T++ + GA    L    G  +     E Y        L     +R+ S++  +
Sbjct: 295 RHAFPTMALEHGADIGSLAEIMGHTSKSMILEHYQHVT--AHLKRDAVQRLPSILPEE 350


>gi|163733378|ref|ZP_02140821.1| phage integrase family protein [Roseobacter litoralis Och 149]
 gi|163736004|ref|ZP_02143430.1| phage integrase family protein [Roseobacter litoralis Och 149]
 gi|161390729|gb|EDQ15072.1| phage integrase family protein [Roseobacter litoralis Och 149]
 gi|161393166|gb|EDQ17492.1| phage integrase family protein [Roseobacter litoralis Och 149]
          Length = 332

 Score = 89.3 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 40/298 (13%), Positives = 92/298 (30%), Gaps = 34/298 (11%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVES-- 125
            W++ +   S H      + R ++  +   +  + G         ++T   + + +    
Sbjct: 16  DWMVQQRNASQHTVK---SYRDTWRLFLRFVAVRCGKPVVRLTLSELTAAEVIAFLHHLE 72

Query: 126 --RKHTPSSAIQFLTSMRVLFKWAVRQE---YVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
             R  T  +    L ++R  F +   +E          ++V   K           E++Q
Sbjct: 73  SVRGDTIGTRNCRLAALRSFFGFVATREPELMAQCAEVMNVPTKKAPIRAPDYLEPEEVQ 132

Query: 181 QFKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---NNIFSIKTQKTGTII 233
              +        G +      FL  +G R  ++     Q ++        +  +     I
Sbjct: 133 AILAQPDRSTLIGQRDHTLLSFLYNTGARIQEALDLCPQAIRFEAPGCVRLYGKGRKERI 192

Query: 234 TVELPDG---FMKLLAMTPIGKET-FFINNDKQKMNATQFSIWFKAKATKAGVNK----- 284
           +   P+       LL   P   +   F+N     ++A+            A V+      
Sbjct: 193 SPLWPETVALLRSLLKRVPRPADAALFVNRYGSPLSASGVRFKLAEYVKAAAVDVPTLAQ 252

Query: 285 ---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIRLGIKNSRR 338
              + H  R  +A     AG     + +  G  +++    Y +   +  R  ++   +
Sbjct: 253 KHVTPHSFRHATAVHLVAAGVDVTVIRSWLGHVSLETTNHYAQANLETKRRALEQVEK 310


>gi|312132706|ref|YP_004000045.1| phage integrase family protein [Bifidobacterium longum subsp.
           longum BBMN68]
 gi|311773666|gb|ADQ03154.1| Phage integrase family Protein [Bifidobacterium longum subsp.
           longum BBMN68]
          Length = 393

 Score = 89.3 bits (220), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 51/358 (14%), Positives = 108/358 (30%), Gaps = 52/358 (14%)

Query: 27  KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGS 86
           +  GRR RL    ++  + +    +      R+ +      P  + WL   +       +
Sbjct: 27  RATGRRRRLTAQGKTKAVASARLRMKLDAYVRKGLTPNSPSPRLMDWL-ETWYHERAEAN 85

Query: 87  LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK-HTPSSAIQFLTSMRVLFK 145
           L  NSR S+E+   ++ + +G      +  K +    +  K ++P +A    + ++   +
Sbjct: 86  LRPNSRRSYENAIVRLNKIAGARRINSLGHKDMADVQDGLKCYSPKTATLTWSVLKNALE 145

Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLR 205
            A  +  +  NP   V     +   ++  +     +      +    RL +     +GLR
Sbjct: 146 AARDENLIRRNPAKMVRPVSGRRRPMKVLSPAQAAELIKAEPDP-MWRLNWLLAFATGLR 204

Query: 206 CSDSCRAGVQHLQ----------------------------------NNIFSIKTQKTGT 231
             +     +  L                                    N F +   KT +
Sbjct: 205 QGERLGLTMDELTTLNGRRALVIDHQLQRVPDSRRADWPLGEDVTDLGNGFWLCPPKTDS 264

Query: 232 IITVELPD--------GFMKLLAMTPIGKETFFINNDKQKMNAT-QFSIWFKAKAT---- 278
              + + D         ++ +     +     F+      ++   ++  W KA       
Sbjct: 265 GERIVVLDDVMCGALDEWLAIRKKKGVDSPMLFVTGRGTPIDRRIEYFHWDKALLRIGIA 324

Query: 279 --KAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIK 334
             + GV    H  R  + T+ A+AG      +A  G         Y        L   
Sbjct: 325 NGEDGVRLRPHSARHTADTLFANAGVPESARLALMGHSDGAMDNVYLHADTEALLEAS 382


>gi|238018872|ref|ZP_04599298.1| hypothetical protein VEIDISOL_00732 [Veillonella dispar ATCC 17748]
 gi|237864638|gb|EEP65928.1| hypothetical protein VEIDISOL_00732 [Veillonella dispar ATCC 17748]
          Length = 281

 Score = 89.3 bits (220), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 53/274 (19%), Positives = 101/274 (36%), Gaps = 22/274 (8%)

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
           +   ++   TL+ L +E+       +++ ++  S+   F  I     D     I  +H++
Sbjct: 8   LKRRQRNTITLRQLFNEWLPIHS-QTISNSAVKSYHIAFKHIS-NIADMSITDIHFQHLQ 65

Query: 121 SGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER-PKRKTEGIRPWTK 176
           + ++S +      SS  +  T +  LF +A+ ++Y   N  L +   P R T   R +T+
Sbjct: 66  NVIDSMRVKGLSYSSCKKVRTLLNQLFNYAIIRDYSVTNYALHLNLGPNRPTIKRRVFTR 125

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ----KTGTI 232
           + + +    W+  +        LLY+GLR  +      Q +      +  +    K G  
Sbjct: 126 QQINKL---WAIDTSYSRMILILLYTGLRIGELLNLRRQDINRRSSYLIVRHAKTKAGEG 182

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKF 292
             + +    M ++         F I       + T F   F     +     + H  R  
Sbjct: 183 RIIPIHHRIMPIIEQLHTSDYLFTI-------SYTTFRKHFHNIMKQLNCKHTIHDTRHT 235

Query: 293 SATISADAGATAHELMATYGWKTVD-QAETYTKG 325
            A+   DA A  + L +  G K  D     YT  
Sbjct: 236 FAS-LLDAVAPPNALRSLLGHKQGDITTRVYTHK 268


>gi|167767651|ref|ZP_02439704.1| hypothetical protein CLOSS21_02184 [Clostridium sp. SS2/1]
 gi|167710668|gb|EDS21247.1| hypothetical protein CLOSS21_02184 [Clostridium sp. SS2/1]
 gi|291560785|emb|CBL39585.1| Site-specific recombinase XerD [butyrate-producing bacterium SSC/2]
          Length = 397

 Score = 89.3 bits (220), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 59/378 (15%), Positives = 107/378 (28%), Gaps = 61/378 (16%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
            ++ K     G   Y +          P P      P+            E       K 
Sbjct: 24  KYLYKYVDAFGNTKYVYAWRLTP--TDPTPKGKREKPSLRELEQQIRRDIEDGIDSTGKK 81

Query: 69  TTLKWLISEY-RKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRSGVESR 126
            T   L   Y +++A   ++  +++   E     +   K G      I     +      
Sbjct: 82  MT---LCQLYAKQNAQRANVKKSTQKQREQLMRLLKEDKLGARSIDTIKPSDAKEWALRM 138

Query: 127 KHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPC--LSVERPKRKTEGIRPWTKEDMQQ 181
           K      ++      S++  F  A++ + V  NP      E  +  T+     T+E  Q 
Sbjct: 139 KDKGFSYNTINNHKRSLKASFYIAIQDDCVRKNPFNFKLSEIIENDTKEKVALTEEQEQA 198

Query: 182 FKSFWSEGSQPRLAFE---FLLYSGLRCSDSCRAGVQHLQ------------------NN 220
             SF    +     ++    LL +GLR S+ C   +  +                     
Sbjct: 199 LLSFIKTDNVYHKYYDDVLILLKTGLRISELCGLTIMDIDFIHEVVVINHQLLKSKEQGY 258

Query: 221 IFSIKTQKTGTIITVELPDG----FMKLLAMTPIG--------KETFFINNDKQKMNATQ 268
                  K+GT   V L       F +++   P              F+N+  +   A  
Sbjct: 259 YIETPKTKSGTR-QVPLSRETIQAFQRVIKKRPKAEPFVIDGRGNFLFVNHKGKPKVAID 317

Query: 269 FSIWFKAKATKAGVNK--------SAHGVRKFSATISADAGATAHELMATYGWKTVD--- 317
           +++ F     K   +         + H +R    T  A       +L    G   +    
Sbjct: 318 YNMLFVRIVKKYNKHHKDNPLPHITPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISITM 377

Query: 318 ----QAETYTKGADRIRL 331
                A   T  ++  RL
Sbjct: 378 NWYAHASIDTAKSEVQRL 395


>gi|154488695|ref|ZP_02029544.1| hypothetical protein BIFADO_02002 [Bifidobacterium adolescentis
           L2-32]
 gi|154082832|gb|EDN81877.1| hypothetical protein BIFADO_02002 [Bifidobacterium adolescentis
           L2-32]
          Length = 323

 Score = 89.3 bits (220), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 38/287 (13%), Positives = 91/287 (31%), Gaps = 15/287 (5%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ----IIRKSGDFDYRKITTKHIRS 121
           + P T+   I  +  +      +  S   + +   +    I R + D     I     R 
Sbjct: 40  RGPETMTECIDLFLAAKKLEGCSERSLRYYATTLSRFATEISRPAHDITTDDIRDYLTRY 99

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
             + R    ++       +   F W   ++Y+  +P   +++ +        ++ E ++Q
Sbjct: 100 SRDGRVGK-TTIDNIRRVISSCFSWLEEEDYIYKSPVRRIKKIRTSRMLKPVYSDESLEQ 158

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDG 240
            +    E ++     + L  +G+R  +  +   + +  +    +   K      V     
Sbjct: 159 LRDACKE-TRDLAMIDLLTSTGIRVGELVQLNRRDIDFDARECVVHGKGDKERRVYFDAR 217

Query: 241 FMKLLAM---TPIGKETFFINNDKQKMNA---TQFSIWFKAKATKAGVNK-SAHGVRKFS 293
               L +     +  E     +  +       +      +     +GV     H  R+  
Sbjct: 218 AKTHLLVYLEQRMDDEPALFVSLHRPFKRLEISGVEARLRKLGDDSGVKHVHPHKFRRTL 277

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
           AT + D G    ++    G   +D    Y    D+  +   + + IS
Sbjct: 278 ATKAIDKGMPIEQVQVLLGHSKIDTTLCYA-QVDQDNVKRSHRKFIS 323


>gi|154500802|ref|ZP_02038840.1| hypothetical protein BACCAP_04487 [Bacteroides capillosus ATCC
           29799]
 gi|150270302|gb|EDM97628.1| hypothetical protein BACCAP_04487 [Bacteroides capillosus ATCC
           29799]
          Length = 409

 Score = 89.3 bits (220), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 49/316 (15%), Positives = 99/316 (31%), Gaps = 40/316 (12%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDF 109
           L  +      I     +  T+      + ++     +  N+  ++E+  +  I+   G  
Sbjct: 52  LAKAIRDNRGIPVNHNEDYTVAEWCRLWFETYSKPVIRPNTAKTYENMIENHIVPAIGGV 111

Query: 110 DYRKITTKHIRSG------------VESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVA 154
             +++T   I+               E +  T    S+  +    +    K AV++  + 
Sbjct: 112 KLKRLTAIQIQKMYNDSKTNGRVQRFEKKTDTALSGSTVRRIHMVLSSALKQAVKERIIP 171

Query: 155 INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGV 214
            NPC +   P ++ + +     E +  + S   +       F   L SGLR  +      
Sbjct: 172 YNPCDNCRIPPKEKKEMAIIPSEKLGVYLSEAEKYG-VLPMFFLELSSGLRRGELLALRW 230

Query: 215 QHLQ---------------NNIFSIKTQKTGTIIT-VELPDGFMKLLAM---TPIGKETF 255
             L                +    I   KT   +  V L    + +L             
Sbjct: 231 DDLNVKDRILSVSKQVTRIDGELVITEPKTKNSVRKVALSQQAVDILVREHEQHPDNPIL 290

Query: 256 FINND-KQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYG 312
           F +       +    S   +    KAG+ +    H +R   AT++  +G     L +  G
Sbjct: 291 FPSPRTGGYWSPDAVSRINRKLLAKAGIEERVRFHDLRHTFATMALSSGVDVKTLSSMLG 350

Query: 313 WKTVD-QAETYTKGAD 327
             +     +TYT   +
Sbjct: 351 HYSAGFTLDTYTHITN 366


>gi|261208778|ref|ZP_05923215.1| phage integrase [Enterococcus faecium TC 6]
 gi|289565537|ref|ZP_06445984.1| phage integrase [Enterococcus faecium D344SRF]
 gi|294614438|ref|ZP_06694354.1| phage integrase family protein [Enterococcus faecium E1636]
 gi|260077280|gb|EEW65000.1| phage integrase [Enterococcus faecium TC 6]
 gi|289162619|gb|EFD10472.1| phage integrase [Enterococcus faecium D344SRF]
 gi|291592746|gb|EFF24339.1| phage integrase family protein [Enterococcus faecium E1636]
          Length = 400

 Score = 89.3 bits (220), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 42/271 (15%), Positives = 86/271 (31%), Gaps = 32/271 (11%)

Query: 109 FDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168
           F+  +  +++ R  V     + S   +    ++++   AV++  +A NP   V     + 
Sbjct: 126 FELSQTESRNSRKKVNGETLSKSYINRIRGHLKIVLDRAVKEGVIAKNPVEDVSSLPSEN 185

Query: 169 EGIRPWTKEDMQQFKSFWSEG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
           + +  W   + Q+  +   +        ++ +E L Y+G+R  +       ++     +I
Sbjct: 186 KKVEFWEHSEFQKVMNELKDDKIQTHHRKIVYEMLFYTGIRIGELEALSWSNVDFEKNTI 245

Query: 225 KTQKT---GTIITVELPDGFMKLLAMTP-------------------IGKETFFINNDKQ 262
             +KT    T           K    T                    IG   +    D  
Sbjct: 246 TIEKTLIYNTKDDWYFSPPKTKCAYRTIGLGKKLSLKLRQWYDLQKRIGNFEYVAQLDGT 305

Query: 263 KMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-- 319
                 F+ W K  A KAGV     H +R        +       +    G   +     
Sbjct: 306 FTPPYSFANWLKEAAKKAGVKPIKLHALRHSHVAFLIEQNIQPLSIQERLGHANIQITLG 365

Query: 320 ---ETYTKGADRIRLGIKNSRRISSVVDSDD 347
                Y K   ++   I N +  + +  +D+
Sbjct: 366 TYGHLYAKSDQQVVSAIDNVQEGAILSKNDN 396


>gi|148268476|ref|YP_001247419.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           JH9]
 gi|150394539|ref|YP_001317214.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           JH1]
 gi|257793278|ref|ZP_05642257.1| integrase [Staphylococcus aureus A9781]
 gi|258419785|ref|ZP_05682748.1| phage integrase [Staphylococcus aureus A9719]
 gi|147741545|gb|ABQ49843.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           JH9]
 gi|149946991|gb|ABR52927.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           JH1]
 gi|257787250|gb|EEV25590.1| integrase [Staphylococcus aureus A9781]
 gi|257844196|gb|EEV68582.1| phage integrase [Staphylococcus aureus A9719]
 gi|315128690|gb|EFT84692.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           CGS03]
 gi|329728069|gb|EGG64512.1| site-specific recombinase, phage integrase family [Staphylococcus
           aureus subsp. aureus 21172]
          Length = 345

 Score = 89.3 bits (220), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 50/325 (15%), Positives = 110/325 (33%), Gaps = 26/325 (8%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT--TLKWLIS 76
           GK   Y  K  G+R R               A +    K   + S        TL+    
Sbjct: 8   GKKWQYEFKYEGKRYRKKGFRTK------REANSAGLDKLNELRSGFNIDNYITLEEYFE 61

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRSGVE--SRKHTPSSA 133
            + K+     +  N+   + +    I + K G  +  KI  +  +  +   S++H   + 
Sbjct: 62  NWIKTYKQPVVKENTYRHYRNALQHIQKHKIGKMELSKINRQVYQKFINDYSKEHAKETI 121

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSV-----ERPKRKTEGIRPWTKEDMQQFKSFWSE 188
            +   ++R     A+    +  NP   V     +  K + E     T+ ++ +      +
Sbjct: 122 RKTNGAIRSALDDALYDGLIFKNPAYKVNYKAGKPTKSEQEKFISVTEYEILK-DHVRKK 180

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTG-TIITVELPDG----F 241
            ++  LA   ++ +G R S +    ++H+    N   I  +KT  +   + +        
Sbjct: 181 RTRSSLALFIMICTGCRVSGARNIKIEHINQVKNTIFIDERKTDTSPRYISIAKSDMKHI 240

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADA 300
           M +++   I  + +        +N    +   K+      +   ++H +R    +     
Sbjct: 241 MDVISTFAISYDGYIFKEAGSIINLQAINNALKSACRVNNIPIITSHALRHTHCSYLLAK 300

Query: 301 GATAHELMATYGWKTVD-QAETYTK 324
           G + H +    G K +      Y+ 
Sbjct: 301 GVSIHYISKRLGHKNIAITTSVYSH 325


>gi|285017063|ref|YP_003374774.1| phage integrase [Xanthomonas albilineans GPE PC73]
 gi|283472281|emb|CBA14787.1| putative phage integrase protein [Xanthomonas albilineans]
          Length = 347

 Score = 89.3 bits (220), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 52/341 (15%), Positives = 100/341 (29%), Gaps = 36/341 (10%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGR---RIRLPYPHESTF---IPAYMSALTGSTPKREYIN 62
           P  T     H   +   R    R   R++       TF     A   A       R    
Sbjct: 3   PHCTNRMGLHQVALIEKRGKKWRALVRLKGHPTASKTFNGRKAAEDWARAAEDALRGGTA 62

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122
            P++   TL  LI  Y K          ++        +     GD +   +T + I + 
Sbjct: 63  LPQES-ITLSALIDRYVKEMSKFRPVSATKRGN---LKRWEESLGDREVASLTGQDILTH 118

Query: 123 VESRKHTPSSAIQ-------FLTSMRVLFKWAVRQEYVAINP----CLSVERPKRKTEGI 171
           +  RK  P++           L + R L+   +     +  P      ++ +P  +    
Sbjct: 119 IGQRKAGPATMTMELGFLGEVLAAGRSLWGMTIPDVVASSRPVLRRAGAIAKPVERDRRP 178

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN---IFSIKTQK 228
                +D+  F  F       R    F + S +R  +      +  ++       I+ +K
Sbjct: 179 TGKELDDLAAFFRFNLGAIPMRDLIPFAIDSAMRMGEIVALRWEDYRSGDKPTIQIRDRK 238

Query: 229 -----TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV- 282
                 G    V L    ++++          F                F+    +  + 
Sbjct: 239 DPMDKRGNNQWVPLLGQTVEIIERQQRAGPLIF------PYKPDSIGAAFRRACMRLQIE 292

Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           +   H +R   A+   + G +  E+    G +     + YT
Sbjct: 293 DLHFHDLRHEGASRLFERGYSIPEVAIVTGHRDWKSLKRYT 333


>gi|282925002|ref|ZP_06332667.1| integrase [Staphylococcus aureus A9765]
 gi|282592696|gb|EFB97703.1| integrase [Staphylococcus aureus A9765]
          Length = 345

 Score = 89.3 bits (220), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 50/325 (15%), Positives = 109/325 (33%), Gaps = 26/325 (8%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT--TLKWLIS 76
           GK   Y  K  G+R R               A +    K   + S        TL+    
Sbjct: 8   GKKWQYEFKHEGKRYRKKGFRTK------REANSAGLDKLNELRSGFNIDNYITLEEYFE 61

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRSGVE--SRKHTPSSA 133
            + K+     +  N+   + +    I + K G  +  KI  +  +  +   S++H   + 
Sbjct: 62  NWIKTYKQPVVKENTYRHYRNALQHIQKHKIGKMELSKINRQVYQKFINDYSKEHAKETI 121

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSV-----ERPKRKTEGIRPWTKEDMQQFKSFWSE 188
            +   ++R     A+    +  NP   V     +  K + E     T+ ++ +      +
Sbjct: 122 RKTNGAIRSALDDALYDGLIFKNPAYKVNYKAGKPTKSEQEKFISVTEYEILK-DHVRKK 180

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTG-TIITVELPDG----F 241
            ++  LA   ++ +G R S +     +H+    N   I  +KT  +   + +        
Sbjct: 181 RTRSSLALFIMICTGCRVSGARNIKTEHINQVKNTIFIDERKTDTSPRYISIAKSDMKHI 240

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADA 300
           M +++   I  + +        +N    +   K+      +   ++H +R    +     
Sbjct: 241 MDVISTFAISYDGYIFKEAGSIINLQAINNALKSACRVNNIPIITSHALRHTHCSYLLAK 300

Query: 301 GATAHELMATYGWKTVD-QAETYTK 324
           G + H +    G K +      Y+ 
Sbjct: 301 GVSIHYISKRLGHKNIAITTSVYSH 325


>gi|308234991|ref|ZP_07665728.1| phage family integrase/recombinase protein [Gardnerella vaginalis
           ATCC 14018]
 gi|311113898|ref|YP_003985119.1| phage integrase [Gardnerella vaginalis ATCC 14019]
 gi|310945392|gb|ADP38096.1| phage integrase [Gardnerella vaginalis ATCC 14019]
          Length = 277

 Score = 89.3 bits (220), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 28/261 (10%), Positives = 84/261 (32%), Gaps = 10/261 (3%)

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
           +  P + +  ++ + +         ++         ++ R   +     IT + +     
Sbjct: 7   KLLPNSWETYVTHWLEYLEASGYTEDTIRCRYYKISRLARLL-NQPPEDITGQQLVELFA 65

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
            +     +   + +++R  + + + +E + +NP + + + +++     P     ++   +
Sbjct: 66  HQDWKRETRKGYSSTIRSFYSYMIEEEIIDVNPTVKLPKIRKEYAIPHPCPDYIIRGALA 125

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS---IKTQKTGTIITVELPDGF 241
                 +           GLR S+  +     +         +   K     TV +    
Sbjct: 126 RVRGNKEYEAMLRLGAECGLRRSEIAQVSSSDIMMLNTHPQLLVHGKGRKERTVPIAPDL 185

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAG 301
            +++A         F       + A+  +      +   G   S H +R   AT + ++ 
Sbjct: 186 AQIIAN---KHGYMFPGRWTGHVEASYIAH---HISQLLGNGYSTHSLRHRYATNAYEST 239

Query: 302 ATAHELMATYGWKTVDQAETY 322
                +    G  +V+  + Y
Sbjct: 240 HDLLLVSKLLGHASVETTQIY 260


>gi|325453347|gb|ADZ13628.1| integrase [Cronobacter phage ENT47670]
          Length = 387

 Score = 88.9 bits (219), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 44/219 (20%), Positives = 82/219 (37%), Gaps = 25/219 (11%)

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             T + A   L+ ++ L + A  +E+  ++    V+ P+ K + IR     + ++     
Sbjct: 141 AATATKATH-LSFIKALLR-AAEREWKMLDKAPIVKVPQPKNKRIRWLEPHEAKRLIDEC 198

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGFM 242
            +  +     EF L +GLR S+      Q +           +  K+   I V L D   
Sbjct: 199 PDPLKS--VVEFALATGLRRSNIINLEWQQIDMQRRVAWIHPEQSKSNQAIGVALNDTAC 256

Query: 243 KLLAMTPIGKETFFINNDK--------------QKMNATQFSIWFKAKATKAGV-NKSAH 287
           ++L    IG    ++   K              +KM     + W +A   +AG+ +   H
Sbjct: 257 RVLKRQ-IGNHHKWVFVYKESCTRPDGTKVPTVRKMRYDANTAW-RAALKRAGIEDFRFH 314

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            +R   A+    AG     L    GW++++    Y   A
Sbjct: 315 DLRHTWASWLVQAGVPISVLQEMGGWESIEMVRRYAHLA 353


>gi|307710046|ref|ZP_07646491.1| phage integrase family protein [Streptococcus mitis SK564]
 gi|307619231|gb|EFN98362.1| phage integrase family protein [Streptococcus mitis SK564]
          Length = 381

 Score = 88.9 bits (219), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 62/374 (16%), Positives = 124/374 (33%), Gaps = 54/374 (14%)

Query: 13  KERTRHGKIIYYFRK---------GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63
           K  T+ G+  Y F+             R  R  +        A    L          N 
Sbjct: 4   KYITKKGETRYLFQTYLGIDPATGKEKRTTRRGFKTIKEAKAAERDLLLDVEENGFSNNE 63

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRSG 122
             + P T   +   +  S    ++   +  + +   D +I     D   ++I+  + +  
Sbjct: 64  DFQNP-TFAEVAELWLDSYK-STVKPTTYQNTKKKLDVMIDSYFTDMKIQQISVAYCQKV 121

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT-EGIR-PWTKEDMQ 180
                +       + + +  +FK+A   + +  NP   + +PK +  +G    +TK+++ 
Sbjct: 122 AVKLSNRYILYANYYSVISRIFKYATSIDIIKSNPLDKIIKPKNRPLKGKENYYTKQELT 181

Query: 181 QFKSFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQ---------------NNIFS 223
           +F   +    +P     F  L +SGLR  ++       +                    +
Sbjct: 182 EFLKVYKANCKPVNYTFFHLLAFSGLRTGEAIGLMWSDVDFENKLLSISRTAVVIGKKQT 241

Query: 224 IKTQKTG-TIITVELPDGFMKLLAMTPIGK---------------ETFFINNDKQKMNAT 267
           ++  KT  +   + L D  + +L +    +                  F NND   + A 
Sbjct: 242 VQDPKTKRSKRVITLDDETLNVLKLWKRQQIKEYFQAGVPYKHDLNYIFTNNDGGWLLAA 301

Query: 268 QFSI----WFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETY 322
              +    +F+       +  S HG R   A++  +AG TA  +    G   V    + Y
Sbjct: 302 TMKVKLLRFFRKHNNLKKI--SPHGFRHTHASLLFEAGITAKIISDRLGHNNVQTTLDMY 359

Query: 323 TKGADRIRLGIKNS 336
           T   D  R+ + N 
Sbjct: 360 THINDNQRVEVVNQ 373


>gi|292491978|ref|YP_003527417.1| integrase family protein [Nitrosococcus halophilus Nc4]
 gi|291580573|gb|ADE15030.1| integrase family protein [Nitrosococcus halophilus Nc4]
          Length = 458

 Score = 88.9 bits (219), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 59/357 (16%), Positives = 117/357 (32%), Gaps = 52/357 (14%)

Query: 10  FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
           +V +   RHGK                 P   T  P    A+  +      I S  K   
Sbjct: 104 YVDQLIDRHGK-----------------PDPETGEPKVDEAIVTAVRLGYEIISSGKGVM 146

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR-KSGDFDYRKITT----KHIRSGVE 124
                + E  +      +   +  + E   +  +R   GD   ++I+     +++   + 
Sbjct: 147 LASQALEENLEELRGRQVLNQTIRARERRVNAFLRWLGGDRKLKEISREDAGRYVTQVLL 206

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER---------PKRKTEGIRPWT 175
            R ++  +    ++ +   F WA+ +     NP   + +          ++K    R WT
Sbjct: 207 KRGNSQKTVKDTISDLSAFFNWAMERGQTVSNPFRGMSKSVRDTTRGTREKKNGKRRVWT 266

Query: 176 KEDMQQF----KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
           +++++      K+   E           LY+G+R ++     ++ + ++   I   KT +
Sbjct: 267 QKELKHLLLEIKARLGEDDPLWAMTVIALYTGMRENEIAETRLEDVHSDHIHIPEGKTES 326

Query: 232 II-TVELPDGFMKLLAMTPIGK-ETFFIN--------NDKQKMNATQFSIWFKAKATKAG 281
            I    +       +        E + I+        N +    A +F    + K  KAG
Sbjct: 327 SIRDTPIHPLLKPFIEQLKASSTEGYLISGLIRGGEDNKRHHYFAKRFG---RFKREKAG 383

Query: 282 VNKS---AHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIK 334
           +  S    H  RK  A     AG +        G K        Y+ G D  ++   
Sbjct: 384 LTDSRIVFHSFRKNFAGALEQAGVSETLAQQIVGHKKQSLTYGLYSPGVDLEKMAEA 440


>gi|126660765|ref|ZP_01731862.1| phage integrase [Cyanothece sp. CCY0110]
 gi|126617956|gb|EAZ88728.1| phage integrase [Cyanothece sp. CCY0110]
          Length = 362

 Score = 88.9 bits (219), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 38/279 (13%), Positives = 75/279 (26%), Gaps = 68/279 (24%)

Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP---WTK 176
           R  VE + +  ++    LT +R  +  AV +  +  NP L ++ P+   +         +
Sbjct: 71  RWLVEIQDYKCATIALKLTVVRRFYAGAVERGLILANPALGIKPPRENIDPAERINYLEE 130

Query: 177 EDMQQFKSFWSE-----GSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKT 229
            ++    +           + R     ++  G R  +  RA +  +  +     I+    
Sbjct: 131 AEVTGLLASLPTENTIGALRDRFLVAVMVLEGCRTVEMHRACIGDIVKRGGDIGIRVSGK 190

Query: 230 GTIITVELPDGFMKL----LAMTPIGKETFFI----------NNDKQKMNATQFSIWFKA 275
            +   V L     KL    L       E                   +++          
Sbjct: 191 RSRRIVPLTPDLAKLLNKYLNARKRSGEALLADTPLFIALDKRTHGGRLSRRSIQRVIDK 250

Query: 276 KATKAGVN--------------------------------------------KSAHGVRK 291
               +G+                                              SAH +R 
Sbjct: 251 YLRASGLKEQPTKAKSKKRASNQSHQPSIREKQSPAQSASSKSHKFQQPQRQLSAHSLRH 310

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
            + T++  AG+   ++    G         Y   ADR R
Sbjct: 311 TAGTLAIRAGSDLRQVQDLLGHADPRTTALYAHVADRWR 349


>gi|146301384|ref|YP_001195975.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
 gi|146155802|gb|ABQ06656.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
          Length = 305

 Score = 88.9 bits (219), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 39/298 (13%), Positives = 92/298 (30%), Gaps = 51/298 (17%)

Query: 80  KSAHWGSLAV---------NSRISFESYFDQII-------RKSGDFDYRKITTKHIRSGV 123
           +S  +  L V         N +    + +  II        ++G    + + +K     +
Sbjct: 6   QSREFLRLTVAFGEFVKVRNYKQGRSNLYKNIITEFLVWLEQAGISRIQNVASKESVRYL 65

Query: 124 ESRKHTPSS------AIQFLTS---MRVLFK-WAVRQEYVAINPCLSVERPKRKTEGIR- 172
           +     P        A + +     ++ LF+ + +  + +       +      T+  R 
Sbjct: 66  DYLSSRPKKRGNGILAEKTIKLHLFVQGLFQVYLLENKEIQN--AYYIPSITGGTQKPRN 123

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTG 230
             T E+++      +E    +         GLR S+     ++ +     +  ++  K  
Sbjct: 124 ILTIEEIKLVY-HHAENEMEKALLSIAYGCGLRRSEIASLDLKDVNLIKGMLVVRQGKGN 182

Query: 231 TIITVELPDGFMKLLAMTPIGK------------ETFFINNDKQKMNATQFSIWFKAKAT 278
               V + D  ++ L      +            E FFIN+  ++      +        
Sbjct: 183 KRREVPMSDTVLQYLTKYVRDERPERLTGRNQNEEAFFINSRGRRSTGENLNEILNKMIE 242

Query: 279 KAGV------NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
           + G         + H +R   A   A+  A    + +  G   ++    Y    ++ R
Sbjct: 243 QTGKFELVQKEITLHCLRHSIAFHLAENNAGIDFIRSFLGHTQINTTYIYA-VQNKKR 299


>gi|24371538|ref|NP_720278.1| Int [Enterobacteria phage ST64T]
 gi|24250765|gb|AAL15478.1| Int [Salmonella phage ST64T]
          Length = 387

 Score = 88.9 bits (219), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 47/252 (18%), Positives = 89/252 (35%), Gaps = 40/252 (15%)

Query: 97  SYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS---AIQFLTSMRVLFKWAVRQEYV 153
              D+  RK+G                   K  P++       L+ ++ L + A  +E+ 
Sbjct: 120 KLMDEACRKNGKQPPV-------------FKPKPAALATKATHLSFIKALLR-AAEREWK 165

Query: 154 AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG 213
            ++    ++ P+ K + IR     + ++      E  +     EF L +GLR S+     
Sbjct: 166 MLDKAPIIKVPQPKNKRIRWLEPHEAKRLIDECPEPLKS--VVEFALSTGLRRSNIINLE 223

Query: 214 VQHLQNN----IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK-------- 261
            Q +           +  K+   I V L D   ++L    IG    ++   K        
Sbjct: 224 WQQIDMQRKVAWIHPEQSKSNQAIGVALNDTACRVLKKQ-IGNHHKWVFVYKESSTKPDG 282

Query: 262 ------QKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWK 314
                 +KM     + W ++   +AG+ +   H +R   A+    AG     L    GW+
Sbjct: 283 TKSPVVRKMRYDANTAW-RSALKRAGIEDFRFHDLRHTWASWLVQAGVPISVLQEMGGWE 341

Query: 315 TVDQAETYTKGA 326
           +++    Y   A
Sbjct: 342 SIEMVRRYAHLA 353


>gi|114331357|ref|YP_747579.1| integron integrase [Nitrosomonas eutropha C91]
 gi|114308371|gb|ABI59614.1| integron integrase [Nitrosomonas eutropha C91]
          Length = 329

 Score = 88.9 bits (219), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 47/324 (14%), Positives = 98/324 (30%), Gaps = 59/324 (18%)

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122
            P   PT+ K L+ + R        ++ + + +  +  + I        +++    + + 
Sbjct: 5   PPSHAPTSPK-LLDQLRDKLRLKHYSIRTEVQYVQWVRRFILFHDKRHPQEMGAGEVEAF 63

Query: 123 VESRKHTPSSA----IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
           +     +   A     Q L+++  L++  +  +   ++   +V R KR        T  +
Sbjct: 64  LTHLAVSGRVAASTQNQALSALLFLYREVLEIDLPWLD---NVVRAKRPARLPVVLTHNE 120

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKT------- 229
           +Q      + G+   +A   L  +G+R  +  R  V+ +        ++  K        
Sbjct: 121 IQAVLGRMT-GAHGLMAR-LLYGTGMRLMECVRLRVKDVDFERAEILVRDGKGAKDRVTM 178

Query: 230 -------------------------GTIITVELPDGFMKLLAMTPIGK--ETFFINN--- 259
                                      +  V LPD   +           +  F+     
Sbjct: 179 LPQSLIPVLNEHIRHRRLLYEDDLAKDMAAVYLPDALERKYPKAATDWIWQYIFVAKSYS 238

Query: 260 --------DKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMA 309
                    +  M+        K     AGV K  + H +R   AT    AG     +  
Sbjct: 239 VDPRSGVERRHHMDEKLLQRAMKKAVLAAGVTKPATPHTLRHSFATHLLQAGYDIRTVQE 298

Query: 310 TYGWKTVDQAETYTKGADRIRLGI 333
             G   V     YT   ++   G+
Sbjct: 299 LLGHSDVATTMIYTHVLNKGGKGV 322


>gi|288800951|ref|ZP_06406408.1| integrase [Prevotella sp. oral taxon 299 str. F0039]
 gi|288332412|gb|EFC70893.1| integrase [Prevotella sp. oral taxon 299 str. F0039]
          Length = 383

 Score = 88.9 bits (219), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 39/233 (16%), Positives = 85/233 (36%), Gaps = 17/233 (7%)

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
            +    +  S+    L  +  + + A ++ Y+  +P   ++  +  T      T +D+ +
Sbjct: 116 MLSDLGNKESTVSNRLRHLHQVIRKAQQERYIREDPFELID-IETPTYERNALTSDDLHK 174

Query: 182 FKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHL---QNNI--FSIKTQKTGTII 233
             S+    S     RL F    ++GL  SD  +  +  +    +     S+   KT    
Sbjct: 175 LLSYRPHRSVDNHCRLIFLLGCFTGLAFSDLKKLRMDDVYTLDDGRRYISLCRTKTQNRS 234

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN----KSAHGV 289
            V L     ++L +   G++   +   ++    + F+   +    KAG+      ++H  
Sbjct: 235 IVPLLPIAEEILTIVNDGRKEGLL--FREFPTNSHFNRKIRDIIIKAGLPSHTEATSHTA 292

Query: 290 RKFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
           R   AT    + G     +    G + +   E Y K   + ++  +    I S
Sbjct: 293 RHTFATTICLENGLPIETVSKMLGHRFISTTELYAK-VSKSKIAREMQPLIGS 344


>gi|284008636|emb|CBA75253.1| phage integrase [Arsenophonus nasoniae]
          Length = 226

 Score = 88.9 bits (219), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 44/203 (21%), Positives = 78/203 (38%), Gaps = 14/203 (6%)

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           SSA  F  +++ +F  A     +  NP L  + PK K +  R  + +D         + +
Sbjct: 16  SSASIFRITLKDIFNEAYCLGIINNNPVLPTKSPKVKVQRTR-LSLDDFNLILESIDDEA 74

Query: 191 QPR-LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG-----FMKL 244
               +A +  L +G R SD  +   + L ++   I  QKTG+ I + L           +
Sbjct: 75  HWLTIAMKLALVTGQRVSDISKMKYEDLHDDKLWIIQQKTGSKIAIPLTVEIIGIKLSAI 134

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK-----AGVNKSAHGVRKFSATISAD 299
           + +     E + IN+  +K++  + S  F     K      G   S H +R  SA +  +
Sbjct: 135 IKINENDSE-YIINDAGKKVSIEKISKGFAKLRDKTNLTWEGTPPSFHEIRSLSARLYTE 193

Query: 300 AGATAHELMATYGWKTVDQAETY 322
              +        G K+      Y
Sbjct: 194 KNGSDFA-QKLLGHKSAKMTAKY 215


>gi|197363656|ref|YP_002143293.1| bacteriophage integrase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|197095133|emb|CAR60680.1| probable bacteriophage integrase [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
          Length = 337

 Score = 88.9 bits (219), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 46/321 (14%), Positives = 91/321 (28%), Gaps = 44/321 (13%)

Query: 29  HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLA 88
            G+RIR           AY   +T    ++ ++   +     L  LI        W  L 
Sbjct: 21  KGKRIR-RKFATKGEALAYEKYITSEMEEKPWLGEKQDNRR-LSELIEL------WHDLY 72

Query: 89  VNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGVESR-------------KHTPSS 132
             +    +    +   I    G+    +IT        E R                P +
Sbjct: 73  GRTLADSDRMMSKLKGICAGMGNPIAAQITAADFSKYREGRLKGEIPDVNGRCMPIQPQT 132

Query: 133 AIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
                 ++  +F    +   +   NP   +   K   + +     E+++    + SE + 
Sbjct: 133 VNHEQRNLSAVFGTLKKLGHWSLPNPLSGIPTFKVDEKMVSFLYPEEIKTLLQYLSESNS 192

Query: 192 P--RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP 249
           P   +  +  L +G R S++       +     + K  K+  + ++ +       +    
Sbjct: 193 PSVLIIAKICLATGARWSEAENLEGSQVTPYRITYKNTKSRKVRSIPISKELYNEMPK-- 250

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGV----NKSAHGVRKFSATISADAGATAH 305
                       Q          F+    KAG+     +  H +R   A+     G    
Sbjct: 251 ---------KRGQLFTP--CRKTFERTVAKAGIELPEGQCTHVLRHTFASHFMMNGGNIL 299

Query: 306 ELMATYGWKTVDQAETYTKGA 326
            L    G   +     Y   A
Sbjct: 300 VLKEILGHSDIKMTMIYAHFA 320


>gi|197118134|ref|YP_002138561.1| integrase family protein [Geobacter bemidjiensis Bem]
 gi|197087494|gb|ACH38765.1| integrase family protein [Geobacter bemidjiensis Bem]
          Length = 434

 Score = 88.9 bits (219), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 55/331 (16%), Positives = 106/331 (32%), Gaps = 59/331 (17%)

Query: 50  ALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF 109
           A   S      I +P   P ++  +I EY       +    + + + SY+  +       
Sbjct: 91  AQAESNLVEPKIAAPPPSP-SIASIIQEYVNDNK-SAWTGKTLLEYGSYWRLLQDVLEVD 148

Query: 110 DYRKITTKHIRSGVESRKHTPSS--------------------------AIQFLTSMRVL 143
              ++T + +R   ++    P++                            + LT    L
Sbjct: 149 TVAEVTREEVRKLRDTLCRLPANLYKKHPGKTIKEVLALEGITPMSTTTVNKLLTLFGSL 208

Query: 144 FKWAVRQEYVAINPCLS--VERPKRKTEGIRPWTKEDMQQFKSFWSEGS--QPRLAFEFL 199
               V++ Y   NP     V++ KR  E  + +T+ED+++  +     S    R     +
Sbjct: 209 MIHCVKEGYRRDNPTEGLKVKQKKRADEERKAYTREDLKKMVAALPSPSAKPERYWVPLI 268

Query: 200 -LYSGLRCSDSCRAGVQHLQ--NNIFSI-------KTQKT-GTIITVELPD-----GFMK 243
            +YSG+R  + C   V  ++  + ++         K  KT  +   V +       G ++
Sbjct: 269 GMYSGMRLGEICGLHVSDVRQVDGVWVFDVNEEADKRLKTEASKRLVPIHPKLIGLGLLR 328

Query: 244 LLAMTPIGKETF----FINNDKQKMNATQFSIWF----KAKATKAGVNKSAHGVRKFSAT 295
            +      K        +  D     A     WF    +   T+  + KS H +R   A 
Sbjct: 329 YVETMKERKSVRMWPKLVRRDSDGYCA-AVGNWFGRFNRKHVTEDPL-KSFHSLRHAFAD 386

Query: 296 ISADAGATAHELMATYGWKTVD-QAETYTKG 325
                G   + +    G          Y K 
Sbjct: 387 TLKQLGVQENLIAELMGHANDSITTGRYGKR 417


>gi|292905278|ref|YP_003541149.1| phage integrase [Anabaena variabilis ATCC 29413]
 gi|75705016|gb|ABA24691.1| Phage integrase [Anabaena variabilis ATCC 29413]
          Length = 309

 Score = 88.9 bits (219), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 43/287 (14%), Positives = 91/287 (31%), Gaps = 34/287 (11%)

Query: 85  GSLAVNSRISFESYFDQIIR-------KSGDFDYRKITTKHIRSGVESR--KHTPSSAIQ 135
            SL   SR + +   D I          + +  +  +  +H  +       K+ P++A +
Sbjct: 25  ASLGKGSRRTMKQALDAIALLATNQTCDAMNCPWGLLRYQHTMAIRAELMEKYAPATANK 84

Query: 136 FLTSMRVLFKWAVRQEYVAINP-----CLSVERPKRKT-EGIRPWTKEDMQQFKSFW--- 186
            L ++R + K A R   +   P        ++R K       R  + +++ +  +     
Sbjct: 85  MLAALRRVLKEAQRLGQMT--PEDYAKAADIKRVKSSGLPKGRALSSDELGKLLNVCVED 142

Query: 187 -SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDG--- 240
            S       A   +L  GLR  +     +  L        ++  K      V  P+    
Sbjct: 143 ESIFGVRDAAMLMILRVGLRRGEVVNLDLADLDLNEGSVKVRGGKGRKDRVVFFPESAIA 202

Query: 241 -FMKLLAMTPIGKETFFI--NNDK----QKMNATQFSIWFKAKATKAGV-NKSAHGVRKF 292
              K + +         +  +       ++++          +  +AG+ N + H  R+ 
Sbjct: 203 YLQKWVKIRGDDSSPLLLPISKSGNLVWRRLSDQAVLSIMLGRGEEAGIENFTPHDFRRT 262

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
            A    DAG     +    G         Y +  D  +    N  ++
Sbjct: 263 FAGDLLDAGVDIVTVQKLMGHADPATTAKYDRRGDAAKKRAVNLLKL 309


>gi|83719063|ref|YP_443627.1| phage integrase family site specific recombinase [Burkholderia
           thailandensis E264]
 gi|83652888|gb|ABC36951.1| site-specific recombinase, phage integrase family [Burkholderia
           thailandensis E264]
          Length = 222

 Score = 88.9 bits (219), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 72/201 (35%), Gaps = 14/201 (6%)

Query: 131 SSAIQFLTSMRVLFKWAVRQEY---VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            +A++ L  +  +F  A+ +E+   +  NP   + +P+      R  T  +     S  S
Sbjct: 16  GTALRELQLLGHVFSVAI-REWGAQLPSNPVSLIRKPRSGKARDRVLTTSERTALISACS 74

Query: 188 --EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMK 243
                  +    F L +  R  +      Q +       +++  K G    + L    + 
Sbjct: 75  QCHNPWIKPVVIFALETAARRGEILALTWQDVDLARRTATLQITKAGQPRRIPLSATCVT 134

Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGA 302
           +L   P       ++     ++       ++    +AG+ N + H +R  + T  A  G 
Sbjct: 135 MLEALPRS-----LDGRVFPVSMETVKQAYERAVARAGITNFTFHDLRHDALTRLAKQGL 189

Query: 303 TAHELMATYGWKTVDQAETYT 323
           +  EL A  G  T +  + Y 
Sbjct: 190 SILELRAISGHATANMLQRYV 210


>gi|119715338|ref|YP_922303.1| phage integrase family protein [Nocardioides sp. JS614]
 gi|119535999|gb|ABL80616.1| phage integrase family protein [Nocardioides sp. JS614]
          Length = 383

 Score = 88.9 bits (219), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 55/355 (15%), Positives = 113/355 (31%), Gaps = 48/355 (13%)

Query: 18  HGKIIYYFRKGHG---RRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           +GK    +R   G    R          ++    SA+   T        P+    T    
Sbjct: 10  NGKWRARYRDEAGNERARHFDRKIDAQQWLDQVTSAVVTGT-----YADPKAGRITFAAF 64

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT---PS 131
             E+     W   A  + ++       +         +++    + + ++        P 
Sbjct: 65  FGEWSARQVW---APGTVLAMSLAARSV--PFAGKPMKQVRRSDVETWIKQMNAAGLAPG 119

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE--GIRPWTKEDMQQFKSFWSEG 189
           +      ++R +F+ AV+   +  +P   V  P+ +    G+     E+++Q  +   E 
Sbjct: 120 TIKTRYVNVRSVFRAAVKDRVIGSDPTDGVRLPRGRRADVGMSIPAPEEVRQLMAVADER 179

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----------------NNIFSIKTQKTGTII 233
            QP +A     ++GLR  ++    +  +                      ++  K G+  
Sbjct: 180 FQPFIA--LCAFAGLRLGEAAGVQLGDVDFLRRSLKVSRQVQRVNGGAIDVRAPKYGSER 237

Query: 234 TVELPDGFMKLLA-----MTPIGKETFFINNDKQ-KMNATQFSIWFKAKATKAGVNK-SA 286
            V L D  + +LA         GK  +    +     +      W++     AG++    
Sbjct: 238 VVYLADSLVNVLAEHVGAHGTTGKARWLFAGEGDDPPHQNTIGYWWRKTLRDAGLSGIKL 297

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK----GADRIRLGIKNS 336
           H +R F A+    AG     +  + G         TY        DR R   ++ 
Sbjct: 298 HDLRHFYASGLIAAGCDVVTVQRSLGHAKATTTLNTYAHLWPTAEDRTRKAAESI 352


>gi|328947969|ref|YP_004365306.1| integrase family protein [Treponema succinifaciens DSM 2489]
 gi|328448293|gb|AEB14009.1| integrase family protein [Treponema succinifaciens DSM 2489]
          Length = 330

 Score = 88.9 bits (219), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 37/279 (13%), Positives = 89/279 (31%), Gaps = 15/279 (5%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK----HT 129
           L+  +  + H    +  S   ++S   + I       + +I T+ +R  +   +     +
Sbjct: 55  LLENFLAAKHVEGCSERSIKYYKSTLQKAITIL-HKPFNQIETEDLRKYLSDYQKINNAS 113

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
             +       +   F W   + Y+  +P   + + K        ++ E +   +      
Sbjct: 114 RMTIDNVRRILSTFFTWLEDENYILKSPVRRIHKIKTAKLIKETYSDETLVLLRDNCKT- 172

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDG----FMKL 244
           ++     + L  +G+R S+      Q +   N   +   K      V          +  
Sbjct: 173 TRDLAIIDMLASTGMRVSELVTLNKQDVDFVNRECVVFGKGSKERPVYFDARTKIHLLNY 232

Query: 245 LAMTPIGKETFFIN--NDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG 301
           L          F++      ++  +   I  +       + K   H  R+  AT + D G
Sbjct: 233 LNERKDNNPALFVSLLEPHNRLQISGVEITLRKLGRSLNIQKVHPHKFRRTLATQAIDKG 292

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
               ++    G + +D    Y    D+  + + + + I 
Sbjct: 293 MPIEQVQRLLGHQKIDTTMEYA-MVDQQNVKVSHKKYIG 330


>gi|115376183|ref|ZP_01463426.1| transposase [Stigmatella aurantiaca DW4/3-1]
 gi|115366833|gb|EAU65825.1| transposase [Stigmatella aurantiaca DW4/3-1]
          Length = 385

 Score = 88.9 bits (219), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 39/237 (16%), Positives = 73/237 (30%), Gaps = 28/237 (11%)

Query: 112 RKITTKHIRSGVESRKHTPS------SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP- 164
           R       R+ +  RK   +      +    L+++  L   A   + +   P   V+   
Sbjct: 118 RARKEDATRAAIGKRKDGEAKPLSLKTINNVLSALSKLLNLAEEXKVIKQAP--RVKLFG 175

Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
           K         T E+  +         + R      L +GLR  +        L  +   +
Sbjct: 176 KLPKPKFDFLTFEEAGRLIDAAEP--EWRTLMLVALKTGLRQGELIGLQWADLDLSRGMV 233

Query: 225 KTQ-----------KTGTIITVELPDGFMKLLAM-TPIGKETFFINNDKQKMNATQFSIW 272
             +           K G   TV+LP   ++ L     +     F  +D Q + A + +  
Sbjct: 234 TVRRTIWRGVTDLPKGGRERTVDLPASAVEALKAHRHLRGRFVFCQDDGQPLTAGKTAQP 293

Query: 273 FKAKATKAGVNK-----SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            +     A + +       H +R   A+  A  G     +    G  T++  E Y  
Sbjct: 294 LRRALKMADIGREEGRIGWHDLRHTYASHLAMKGIPLKVIQELMGHVTIEMTERYAH 350


>gi|108804429|ref|YP_644366.1| phage integrase [Rubrobacter xylanophilus DSM 9941]
 gi|108765672|gb|ABG04554.1| phage integrase [Rubrobacter xylanophilus DSM 9941]
          Length = 377

 Score = 88.9 bits (219), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 58/358 (16%), Positives = 110/358 (30%), Gaps = 46/358 (12%)

Query: 11  VTKERTRHGKII----YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
           V K R + GK+I     YF     RR                  L  +    +       
Sbjct: 13  VYKRRNKDGKVIGYRGSYFAPDGKRRYVSGKTKTEA-----QRLLRQAMADADRGLVFDA 67

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVES 125
              T+   +  + + +   ++   +   +E      I    G      +T  H+R     
Sbjct: 68  GKLTVGEYLDRWLEDSVRDTVRQRTYERYEQISRVHIKPALGRIKLAALTPVHVRGLYRE 127

Query: 126 RKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           R     +  +     T++    + AV    +  N   +V+ P  +   IRP ++E  ++F
Sbjct: 128 RLDAGLSSRTVRYIHTTLHKALEAAVVDGLIPRNVASTVKAPCPRGPDIRPLSQEQSRKF 187

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ--------------- 227
                E  +    +   L+ GLR  +      + +     +++ +               
Sbjct: 188 LEVARE-DRFYALYVLALHCGLREGELLGLKWEDVDLEGGTLQVRRTLSETRTGHKFELP 246

Query: 228 KTGTIITVELPDGFMKLLAMTPI--------------GKETFFINNDKQKMNATQF-SIW 272
           K G   +++L    ++ L                     +  F       M AT      
Sbjct: 247 KNGKGRSIKLSRRAVEALRSHRRRQNEERLRVGSLWQDNDLVFPTTTGTTMRATNLLGRH 306

Query: 273 FKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADR 328
           FK    KAG+     H +R   ATI   AG     +    G  ++    + Y+   +R
Sbjct: 307 FKPLLEKAGLPAIRLHDLRHTCATILLVAGKHPKYVQELLGHASISITLDIYSHVIER 364


>gi|304394248|ref|ZP_07376171.1| tyrosine recombinase XerC [Ahrensia sp. R2A130]
 gi|303293688|gb|EFL88065.1| tyrosine recombinase XerC [Ahrensia sp. R2A130]
          Length = 342

 Score = 88.9 bits (219), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 38/276 (13%), Positives = 77/276 (27%), Gaps = 38/276 (13%)

Query: 85  GSLAVNSRISFESYFDQII----RKSGD----FDYRKITTKHIRSGVESRKHT---PSSA 133
             +A  +  +++    Q         G      D+  +    +R+ +  R++T   P + 
Sbjct: 50  RRMAARTMEAYDRDLQQFCLFLTDYHGRPAKVKDFADLRPISLRAYLAQRRNTGAGPRTL 109

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP--------WTKEDMQQFKSF 185
            + L  +    +   RQ   +     ++  P++     +P         T+   Q  +  
Sbjct: 110 ARGLAGIGSFIRHLERQGLASSAGITAMRAPRQPRTLPKPVRADQALRLTETSEQLHEEP 169

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS---------IKTQKTGTIITVE 236
           W   ++       L   GLR  ++       L     +           T K G    V 
Sbjct: 170 W-IAARDAALMTLLYGCGLRLGEALGLTPFDLGITNMAAPTVTTDTLRITGKGGKTRLVP 228

Query: 237 LPDGFMKLLA-------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAH 287
           L     + +A                F       +    F           G+    + H
Sbjct: 229 LLPVVGEAIASYLRLCPHVIEADAPIFRGMRGGPVQPAVFQRAMARMRGALGLPSTATPH 288

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
            +R   AT     G     +    G  ++   + YT
Sbjct: 289 ALRHSFATHLLGNGGDLRTIQELLGHASLSTTQKYT 324


>gi|227517510|ref|ZP_03947559.1| integrase [Enterococcus faecalis TX0104]
 gi|227075030|gb|EEI12993.1| integrase [Enterococcus faecalis TX0104]
          Length = 424

 Score = 88.9 bits (219), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 49/302 (16%), Positives = 92/302 (30%), Gaps = 53/302 (17%)

Query: 85  GSLAVNSRISFESYFDQII-RKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSM 140
           G++  N+++  E     +   + G      +     +      K       +      S+
Sbjct: 123 GNVKHNTKLGRERLMRILEQDRLGSCPIDSVKLSDAKEWALRMKEKGLSYKTINNDKRSL 182

Query: 141 RVLFKWAVRQEYVAINPC--LSVERPKRKTEGIRPWTKEDMQQFKSF---WSEGSQPRLA 195
           +  F  A++ + +  NP      +     TE   P T    + F SF        +   A
Sbjct: 183 KAAFYTAIQDDCIRKNPFDFQLSDVLDDDTEPKVPLTPAQEESFLSFIQGDKVYQKHYDA 242

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQ----------------NNIFSIKTQKTGTIIT-VELP 238
              LL +GLR S+ C    + L                    + I   KT + +  + + 
Sbjct: 243 IVILLGTGLRISELCGLTDKDLDFENRVIIVSHQLLRNTGVGYYIDEPKTQSGVRKIPMN 302

Query: 239 DG----FMKLLAMTPIGKETF--------FINNDKQKMNATQFSIWFKA------KATKA 280
           +     F +++      K           F+  +   M A  +   F        K+ + 
Sbjct: 303 EEVYQAFQRVIKNRKGAKPFIIDGYANFLFLKQNGYPMTAVDYGGMFGRLVKKYNKSHEE 362

Query: 281 GVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETY-------TKGADRIRL 331
            + K+   H +R    T  A+AG     L    G   +     Y       +  A+  RL
Sbjct: 363 ALPKTTTPHAMRHTFCTRLANAGMNPKALQYIMGHSNITMTLNYYAHATFDSARAEMERL 422

Query: 332 GI 333
             
Sbjct: 423 AA 424


>gi|268679599|ref|YP_003304030.1| integrase family protein [Sulfurospirillum deleyianum DSM 6946]
 gi|268617630|gb|ACZ11995.1| integrase family protein [Sulfurospirillum deleyianum DSM 6946]
          Length = 346

 Score = 88.9 bits (219), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 55/346 (15%), Positives = 119/346 (34%), Gaps = 35/346 (10%)

Query: 1   MTPSLRLPP--FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKR 58
           M   ++ P    V  +   +GK I     G     RL   +++     +         + 
Sbjct: 1   MACVVQHPKTGNVLLQNVVNGKTI-RLSTGKKATSRLIGWYKTHVEDEFWKLYYQKNKEA 59

Query: 59  EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH 118
           +   S  +           Y       +    S+       +++I+  GD     I    
Sbjct: 60  DQRMSFAEYA--------RYIVDITQSNRNEFSQRGEIKKVERLIKYFGDIALDDIRPST 111

Query: 119 IRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
           I++  ++  +   P +  ++ +++ V+FK+A   + +  NP   V+ PK     +  ++ 
Sbjct: 112 IQAWQDTFLKNLAPKTVKEYRSTLSVVFKFAFNDDLIRKNPLTPVKSPKLPRRIVDVFSD 171

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ------NNIFSIKTQ--- 227
           ED ++     S G Q     +F+ YSGLR  +       ++       +    ++     
Sbjct: 172 ED-RKLLIEHSSG-QLHNLIQFVFYSGLRAGEIIGLKWDNIDFDKNKIDVCMRVRKGTVD 229

Query: 228 --KTGTIITVELPDGFMKLL--AMTPIGKETF-FINNDKQK-MNATQFSIWFKAKATKAG 281
             K   I  ++L     + L       G  +F F + + +   + T  +   +    K  
Sbjct: 230 LPKGDKIRLIDLLPQAKQALLVQRQLTGLSSFVFHSKEGKPYFSETSITQSIQELCKKLH 289

Query: 282 VNKSAHGV---RKFSATISADAGATAHELMATYGWKTVDQAE-TYT 323
           +     G+   R+   T+    G     ++   G +T +     YT
Sbjct: 290 IVGGG-GLQKMRRTHNTMLKQFGLPLDWILHQMGHETDEVNRNHYT 334


>gi|191173097|ref|ZP_03034630.1| prophage lambda integrase [Escherichia coli F11]
 gi|190906642|gb|EDV66248.1| prophage lambda integrase [Escherichia coli F11]
 gi|324013230|gb|EGB82449.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 60-1]
          Length = 380

 Score = 88.9 bits (219), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 59/358 (16%), Positives = 110/358 (30%), Gaps = 50/358 (13%)

Query: 9   PFVTKERT-RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTG----------STPK 57
           P +  +   R GK+ + ++     R       E+        A T           S  +
Sbjct: 13  PNLYCKLDKRTGKVYWQYKHPLSGRFHSLGTDENEAKQVATEANTIIAEQRTRQILSVNE 72

Query: 58  REYINSPRKKPTTLKWLISEYRKSAH----WGSLAVNSRISFESYFDQIIRKSGDFDYRK 113
           R      R+   T+   + +Y            L  NS               G    + 
Sbjct: 73  RLERMKGRRSDITVTEWLDKYISIQEDRLQHNELRPNSYRQKGKPIRLFREHCGIQHLKD 132

Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMRVL----FKWAVRQEYVA--INPCLSVERPKRK 167
           IT   I   +++ K       +    +R++    FK A    +V    NP  + ++P+ +
Sbjct: 133 ITALDIAEIIDAVKAEGH--NRMAQVVRMVLIDVFKEAQHAGHVPPGFNPAQATKQPRNR 190

Query: 168 TEGIRPWTKEDMQQ-FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226
               R  +  + Q  F S        +      L +G R  D C      + +++  I  
Sbjct: 191 VNRQR-LSLPEWQAIFDSVSRRQPYLKCGMLLALVTGQRLGDICNLKFSDIWDDMLHITQ 249

Query: 227 QKTGTIITVELP---DGFMKLLAMTPIGKETFFIN-------------NDKQKMNATQFS 270
           +KTG+ + + L    D     L           ++             N   +++A   +
Sbjct: 250 KKTGSKLAIPLNLKCDALNITLREVISQCRDAVVSKYLVHYRHTTSQANRGDQVSANTLT 309

Query: 271 IWFKAKATKAGVNK------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
             FK    K G+        + H  R  S  +  + G    +L    G K+    + Y
Sbjct: 310 TAFKKAREKCGIKWEQGTAPTFHEQRSLSERLYREQGLDTQKL---LGHKSRKMTDRY 364


>gi|301162158|emb|CBW21703.1| putative phage integrase/recombinase [Bacteroides fragilis 638R]
          Length = 308

 Score = 88.9 bits (219), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 35/288 (12%), Positives = 97/288 (33%), Gaps = 36/288 (12%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFD-YRKITTKHIRSGVESRK 127
           T++ +   +R++     +  ++  ++    +  I+ K G+ +   +   +          
Sbjct: 5   TIREISDAWRENKR-PYVKQSTLAAYMLILENHILPKFGESNELHENDVQGFVLEKLEGG 63

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL-SVERP-KRKTEGIRPWTKEDMQQFKSF 185
            +  S    L  ++++ K+ V+ E++  N     ++ P     + +   +  + ++  ++
Sbjct: 64  LSMKSVKDILIVLKMVMKFGVKNEWM--NYYEWDIKYPTDVAGKKLEVLSVANHKKILNY 121

Query: 186 WSEG-SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSI------------------ 224
                S P L     L +GLR  + C      +   + I ++                  
Sbjct: 122 IQSHFSFPGLGIYISLSTGLRIGEICALKWSDINVYDGILTVNRTIERIYIIEGERKHTE 181

Query: 225 ----KTQKTGTIITVELPDGFMKLLAMTP--IGKETFFINNDKQKMNATQFSIWFKAKAT 278
                 +   +   + +    + +L      +  + + + ND+       +  ++K    
Sbjct: 182 LVINTPKTKNSCREIPINKELLTMLKPLKKVVNDDYYILTNDECPTEPRTYRNYYKRLME 241

Query: 279 KAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
           K  + K   HG+R   AT   + G     +    G   +    + Y  
Sbjct: 242 KLDIPKLKYHGLRHSFATRCIEVGCDYKTVSVLLGHSNISTTLDLYVH 289


>gi|254465467|ref|ZP_05078878.1| phage integrase [Rhodobacterales bacterium Y4I]
 gi|206686375|gb|EDZ46857.1| phage integrase [Rhodobacterales bacterium Y4I]
          Length = 229

 Score = 88.9 bits (219), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 76/222 (34%), Gaps = 15/222 (6%)

Query: 139 SMRVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPWTKEDM----QQFKSFWSEGSQ- 191
            +  LF  A          NP   +++ + + +  R  +  +     +       EG++ 
Sbjct: 1   MLSKLFNLAEDWGLRQAGSNPARRIKKFREEEKK-RYLSDAEQMRLGEVLAEALEEGTES 59

Query: 192 --PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP 249
                A   L+++G R S+       ++ ++   +   KTG    + LP     +L   P
Sbjct: 60  VYAVSAILLLIFTGCRLSEILTLRWDYVTSHHLELPDSKTGRR-RIPLPREAYDILMELP 118

Query: 250 I-GKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHEL 307
                 + I  D            ++   +KAG+ +   H +R   A+++   G     L
Sbjct: 119 REAGNPYVILGDVDGAPLVNLQKPWRRIRSKAGLEDVRIHDLRHTYASVAMKDGIDPFTL 178

Query: 308 MATYGWKTVDQAETYTKGAD--RIRLGIKNSRRISSVVDSDD 347
               G K +     Y   AD    R     + R++  V  D 
Sbjct: 179 KEIMGHKNLTTTLRYAHLADDAVQRAAGSVAARLARAVRQDK 220


>gi|115345577|ref|YP_771759.1| tyrosine recombinase [Roseobacter denitrificans OCh 114]
 gi|115292898|gb|ABI93351.1| tyrosine recombinase [Roseobacter denitrificans OCh 114]
          Length = 302

 Score = 88.9 bits (219), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 34/262 (12%), Positives = 88/262 (33%), Gaps = 25/262 (9%)

Query: 91  SRISFESYFDQIIRKSGDFDYRKITTKHIRSG-----VESRKHTPSSAIQFLTSMRVLFK 145
           +  ++        R + ++      +K           +     P+S  + L +++  F 
Sbjct: 23  TLRAYAQDLRTFARFTKEYHLADPLSKDDILAYHSHLRDELHAKPASIERRLVTLKSYFA 82

Query: 146 WAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR--------LAF 196
           W   +     +P   V    +      RP  +E ++      +  +  +        L  
Sbjct: 83  WRADRNSALPSPFADVRISVRIPRRLPRPVDRETLKAVLQSETGPTGAQPADQEVTILMI 142

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---ITVE------LPDGFMKLLAM 247
           + L+ +GLR S+     +  +  +   +  +  G     + V       +   +      
Sbjct: 143 KLLIVTGLRISELTTLKICDVTADASQMIVRGKGNKERMVFVPNAELQEMFRRYCADRVR 202

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAH 305
               K   F+N   +++ +  F    +  + + G+  + + H  R  +AT+  + G    
Sbjct: 203 HDSLKSPLFLNAVGRRLRSQTFRKRLRVLSHRLGITPHLTPHRFRHSAATLLIEEGTDIR 262

Query: 306 ELMATYGWKTVDQAETYTKGAD 327
            + A  G  ++   E Y + ++
Sbjct: 263 MVQALLGHASLRTTEIYVRVSN 284


>gi|46202152|ref|ZP_00053672.2| COG0582: Integrase [Magnetospirillum magnetotacticum MS-1]
          Length = 409

 Score = 88.9 bits (219), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 55/354 (15%), Positives = 121/354 (34%), Gaps = 53/354 (14%)

Query: 17  RHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           + GK I+   ++   G+R+            ++++ +  +  K+  ++   +   T++  
Sbjct: 4   KSGKPIWCVEYKAPDGKRVTKSTFVSKREAESFLAEI--TVEKKRGVHVAERDSITVEKA 61

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE--------- 124
              + K A    L  +++  +E +    I  K G     K+T   + +  +         
Sbjct: 62  AENWLKDAEAAGLERSTQEQYERHVRIYINPKLGTTKLSKLTLADVSNFRDDVTAGWEGE 121

Query: 125 --SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE-------GIRPWT 175
              R  +P+ A +  TS+R +   A  + +VA N C +  R K+           +R  T
Sbjct: 122 GGKRIGSPAMAGKVFTSLRSIISLAQEKGFVATNVCAAARRKKKSKRHAPTNGAAMRIPT 181

Query: 176 KEDMQQFKSFWSEG--SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI- 232
             +++  +   +E    +        + +GLR S+       ++  +   ++  +     
Sbjct: 182 IPEIEALEKAAAEHYPGKMHAMLSTAILTGLRLSELRGLRWANVDLDAGKLQVVERANEW 241

Query: 233 ------------ITVELPDGFMKLLAMTP-------IGKETFFINNDKQKMNATQFSIWF 273
                        T+++    +  +            GK   F N      +A+     F
Sbjct: 242 GEIGSPKSETSWRTMDMGKPLVATMRAWKLAQPLAERGKNLVFPNGAGNVESASNLHHRF 301

Query: 274 ----KAKATKAGVNK----SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
               + +A   G ++    S H  R   A+I    G T  E+    G  T    
Sbjct: 302 VHPVQVQAKLIGEDEDTRFSWHDFRHLYASIHIANGRTVVEVQHLLGHSTPSTT 355


>gi|320654039|gb|EFX22113.1| putative integrase [Escherichia coli O55:H7 str. 3256-97 TW 07815]
          Length = 376

 Score = 88.9 bits (219), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 62/376 (16%), Positives = 115/376 (30%), Gaps = 62/376 (16%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKR-------- 58
           L P+  K   R+ K+ + +R     +       +        +       ++        
Sbjct: 14  LSPYFDK---RNNKVYWRYRHPITGKNHGLGSIDQKLAETIAAEANSRLARQQMEQMLSL 70

Query: 59  -EYINSPRKKPTTLKWLISEYRKS----AHWGSLAVNSRISFESYFDQIIRKSGDFDYRK 113
            E I S     +T+   ++ YRK        G + +N+     +       + G      
Sbjct: 71  QEKIISDTGGSSTVTIFLNNYRKIQQERYENGEIKLNTLKQKAAPLRVFDERFGTRPLDA 130

Query: 114 ITTKHIRSGVESRKHTPSSAIQ--FLTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTE 169
           IT K + S +E  K    + +   F   +  +F+ A +   V    NP  S ++P+ +  
Sbjct: 131 ITVKDVVSVLEEYKARGHNRMGQIFRKVLIDVFREAQQTGDVPPGFNPAESAKKPQVRIS 190

Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229
             R    E M  + +   +G   +      L +G R SD C+     +++    ++ QKT
Sbjct: 191 RQRLTFDEWMMIYNAAEKDGYFLQRGMLLALMTGQRLSDICKMQFSDIRDGYRHVEQQKT 250

Query: 230 GTIITVE-----------------------LPDGFMKLLAMTPIGKETFFINNDKQKMNA 266
           GT I +                        L    +         K           +  
Sbjct: 251 GTRIAIPLALRCDKLNLTLDDVVSSCRDCVLSPWLLHHHHAKGTAK-------RGGMVKP 303

Query: 267 TQFSIWFKAKA-------TKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
              ++ FK             G   S H  R  S  +  + G     L    G       
Sbjct: 304 ATLTVAFKKARDSVDYNWRANGTPPSFHEQRSLSERLFREQGVDTKIL---LGHSNQKMT 360

Query: 320 ETY--TKGADRIRLGI 333
           + Y   +G +  +L I
Sbjct: 361 DIYNDARGKEWKKLVI 376


>gi|307694052|ref|ZP_07636289.1| integrase family protein [Ruminococcaceae bacterium D16]
 gi|295100218|emb|CBK97763.1| Site-specific recombinase XerD [Faecalibacterium prausnitzii L2-6]
          Length = 463

 Score = 88.9 bits (219), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 64/354 (18%), Positives = 103/354 (29%), Gaps = 84/354 (23%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSG------ 122
           TL  L+ EY       + A+++  S      + I    GD     IT + +         
Sbjct: 60  TLNDLLDEYMSIYGVNTWAMSTYESRRGLARNYITPIIGDMLLSDITPRMMDKYYRDLLS 119

Query: 123 -----VESRKHT-----PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
                V +RK T     P +  +    +R  F  AVR E ++ NP L+   PK + +   
Sbjct: 120 VKTVSVNNRKPTSEYLTPHTVREIHKLLRSAFNQAVRWELISRNPVLNATLPKEEHKERD 179

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--------------- 217
            WT E + +      +     LA        LR  +        +               
Sbjct: 180 IWTAETLSKAMEVCDDPILS-LALNLAFSCSLRIGEMLGLTWDCIDIAPQSIENGSAYIF 238

Query: 218 -----------------QNNIFS--------------IKTQKTGTIIT-VELP------- 238
                               +                +K  KT T I  V LP       
Sbjct: 239 VNKELQRVTRGALDDLSDKGVIKKFPPCIASTHTALVLKEPKTKTSIRRVYLPKTVAYML 298

Query: 239 -------DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVR 290
                  D  M L     I     F +++ + M +   +  F     + G+     H +R
Sbjct: 299 VERKKEIDELMDLFGDEYIDNNLVFCSSNGRPMESQVINRAFNKLIKENGLPHVVFHSLR 358

Query: 291 KFSATI-SADAGATAHELMATYGWKTVDQ-AETYTKGADRIRLGIKNSRRISSV 342
             S T      G     +    G   V   A+ Y+   D  R    N++R+   
Sbjct: 359 HSSITYKLKLNGGDMKSVQGDSGHAQVKMVADVYSHIIDEDR--CINAQRLEEA 410


>gi|149191711|ref|ZP_01869952.1| hypothetical protein VSAK1_09143 [Vibrio shilonii AK1]
 gi|148834451|gb|EDL51447.1| hypothetical protein VSAK1_09143 [Vibrio shilonii AK1]
          Length = 378

 Score = 88.9 bits (219), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 36/275 (13%), Positives = 94/275 (34%), Gaps = 14/275 (5%)

Query: 84  WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA-IQFLTSMRV 142
           +         +F S   +++   G      +T + +   + S     +S   ++   +  
Sbjct: 101 FSQRHHRDHKTFVSRSKRVMTAMGRKRITDVTRRDVEKFLNSLTGLSNSTLNRYHAFVSK 160

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF-KSFWSEGSQPRL-AFEFLL 200
           LF  AV  + +  +P   +++     +  R  + ++M+ F +   +E +     A    L
Sbjct: 161 LFSMAVEHDIIDKSPVKGIKKLVENNQKDRVLSSQEMESFCRHACAEPNFIHAYALMLSL 220

Query: 201 YSGLRCSDSCRAGVQHLQNNIFS--IKTQKTGTIITVELPDGFMKLLAM--TPIGKETFF 256
            +G+R  +        L +++ S  +   K+G    +   +   +L+         +  F
Sbjct: 221 LTGMRVGNVMSLTRSMLADDLSSALLPMTKSGKSQRIYFSEPAQRLIRKCLKVSFNDWVF 280

Query: 257 --INNDKQKM-NATQFSIWFKAKATKAG---VNKSAHGVRKFSATISADAGATAHELMAT 310
             + N  + +          +      G      + H +R+  AT           +  +
Sbjct: 281 PSLKNQGEHIAYPRACMDRIQQAMKAEGSLEAPFTIHDLRRTQATQMLHVTNDIRLVQQS 340

Query: 311 YGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345
            G   V+  E Y    +   L   + + + +++ +
Sbjct: 341 LGHSNVNVTERYAYYQNNH-LAQASQQTVEAMLPN 374


>gi|304439581|ref|ZP_07399486.1| phage integrase family site-specific recombinase [Peptoniphilus
           duerdenii ATCC BAA-1640]
 gi|304371960|gb|EFM25561.1| phage integrase family site-specific recombinase [Peptoniphilus
           duerdenii ATCC BAA-1640]
          Length = 309

 Score = 88.9 bits (219), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 41/281 (14%), Positives = 95/281 (33%), Gaps = 27/281 (9%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFL 137
           + K      L+ N+   +   F        +        + + +    ++        + 
Sbjct: 16  FLKYKAMEGLSYNTLYGYSKDFT----VFNEVARGDNLEEKVLNFFLEKRDLKGGYNGYR 71

Query: 138 TSMRVLFKWAVRQEYVAINPC--LSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----Q 191
             +   F + + +E +  NP   L ++R K   E  RP  KE +++  S     S    +
Sbjct: 72  KRLNTYFNFLIEREIIEENPIVKLGIKRKKEDAE-PRPAEKESLKKILSLLDLNSYTEFR 130

Query: 192 PRLAFEFLLYSGLRCSDSCRA--GVQHLQNNIFSIKT--QKTGTIITVELPDGFMKLLAM 247
             +     L +G+R +++ +    +    N    I     K      + L DG +K +  
Sbjct: 131 DYVFILLTLDTGIRPAEAVQVYENLFDYYNKDLRITPSIGKCNKSRILPLSDGVIKYVKR 190

Query: 248 TPI-------GKETFFINNDKQKMNATQFSIWFKAKA---TKAGVNK-SAHGVRKFSATI 296
                          F+++  ++++ T     F          G ++ + + +R + AT 
Sbjct: 191 LFEINKRNNFKSNNLFLSDSGKELSTTAIQRKFARYCDILELCGEDRITPYQLRHYFATT 250

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
             + G     L    G   +   + Y K  ++  +  ++ R
Sbjct: 251 YLENGGNIVYLQYLMGHSDIKMTKKYLK-INQDSVANEHRR 290


>gi|296393307|ref|YP_003658191.1| integrase family protein [Segniliparus rotundus DSM 44985]
 gi|296180454|gb|ADG97360.1| integrase family protein [Segniliparus rotundus DSM 44985]
          Length = 370

 Score = 88.9 bits (219), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 48/326 (14%), Positives = 98/326 (30%), Gaps = 31/326 (9%)

Query: 24  YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAH 83
            +RK   ++             A+ + +        YI +P     T+  +   +     
Sbjct: 19  RYRKPDRKQTTKRGFTTKRDANAFANEVEVKKATGSYI-APALGRVTVSSVAEGWLTHKE 77

Query: 84  WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFL---TSM 140
                   R    ++  ++  + G      +    +   +   +    SA   L    ++
Sbjct: 78  ATLKPSAWRPVESAWRARVEPEWGAVRISDVEQVDVERWIARLRTQNLSATSVLRAHQTL 137

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP-WTKEDMQQFKSFWSEGSQPRLAFEFL 199
             +   AV+   +A NP   ++   RK    R  ++ + +       ++ S+       L
Sbjct: 138 AGVLDLAVKSRRLASNPARGIDGLPRKVRKPRTYFSTDQL----HSLADESKGHRTLVLL 193

Query: 200 LYS-GLRCSDSCRAGVQH----------------LQNNIFSIKTQKTGTIITVELPDGFM 242
           L + G R  ++    V                  L      + T K      V +P   +
Sbjct: 194 LGTMGPRWGETVGLQVGDCDFLRRRVHIRRNAVQLGGGQIVVGTPKGHEDRWVPIPPFLL 253

Query: 243 KLLAMT---PIGKETFFINNDKQKMNA-TQFSIWFKAKATKAGVNK-SAHGVRKFSATIS 297
             LA         +  F       +      S WF     +AG+ + + H +R  +A+I+
Sbjct: 254 DDLARQCEGKKRDDLVFPARGGGFLKRPYAESGWFDGALRRAGLPRVTPHDLRHTAASIA 313

Query: 298 ADAGATAHELMATYGWKTVDQAETYT 323
              GA    L    G       + Y 
Sbjct: 314 VSNGANILALARMLGHDPAMTLKVYA 339


>gi|149920205|ref|ZP_01908677.1| Phage integrase [Plesiocystis pacifica SIR-1]
 gi|149818971|gb|EDM78410.1| Phage integrase [Plesiocystis pacifica SIR-1]
          Length = 392

 Score = 88.9 bits (219), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 42/298 (14%), Positives = 87/298 (29%), Gaps = 21/298 (7%)

Query: 45  PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRK-SAHWGSLAVNSRISFESYFD-QI 102
                 + G     +     +K+  TL      Y +  A       ++  +        +
Sbjct: 48  RERHLLIHGLATASDDAGPIKKEVPTLAEFAPRYMEGYAKANGHKPSTLETKRQVLRLHL 107

Query: 103 IRKSGDFDYRKITTKHIRSGVESRKHTPS--SAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
           I   GD    +I ++ ++          +  S    L  +  + K AV    +   P  +
Sbjct: 108 IPAFGDKRLDQINSELVQRLKAKLTEHMANKSINNVLGVLNTMLKCAVEWGVLEELPVRA 167

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY-SGLRCSDSCRAGVQHLQN 219
            +R + K+  +  +  ++        +  S   L F  L   +GLR  +        +  
Sbjct: 168 -KRMRVKSPSMDFYDFDEYAALVKAAAAQSPECLVFVLLAGDAGLRAGEIRGLHWAAVDL 226

Query: 220 NI-----------FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFIN-NDKQ--KMN 265
                          + T K   I T+ L       L   P   E      ++ +    +
Sbjct: 227 RRRQLTVEHSEYKGELTTPKYDKIRTIPLTRRLADALGTLPRDCELVLYRGSEGREIPTS 286

Query: 266 ATQFSIWFKAKATKAGVNKS-AHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
                   +     A + +   H +R    +  A  GA A  +    G  ++   + Y
Sbjct: 287 RQTGRTMLEKAQDAAKLRRRGPHTLRHTFCSHLAMRGAAARVIQQLAGHASLVTTQRY 344


>gi|6012962|emb|CAB57348.1| integrase [Dichelobacter nodosus]
          Length = 389

 Score = 88.9 bits (219), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 57/363 (15%), Positives = 123/363 (33%), Gaps = 39/363 (10%)

Query: 16  TRHGKIIYYFRKGHGRRIRLPYPHES---------TFIPAYMSALTGSTPKREYINSPRK 66
           T  GK  YY  +  G+   +P                I A +    G  P  E     R+
Sbjct: 31  TPSGKYWYYRYRFAGKDKVMPLGKYPHMNLKEARIAHIEAKIKLSNGCDPVEENNRLKRE 90

Query: 67  KPT----TLKWLISEYRKS--AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
           +      + + +  E+ +     W +     +    +       K G +    +    + 
Sbjct: 91  QERNYNNSFEEIAKEWYQHVLPEWKNKKHA-QQVINTLSQYAFPKIGHYPIDDVPPIELF 149

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE---GIRP-WTK 176
           + +   +    +A +    ++ +F +A++      NP LS  +  R  +      P   +
Sbjct: 150 NLLHEIRDKAETASRLKQRIKAVFDFAIQTGRAKTNPALSAPKIIRNNDNKVKHHPALPE 209

Query: 177 EDMQQFKSFWS--EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ--KTGTI 232
             +++F            +LA +FL+ + +R  +  +     ++ N + I  +  K    
Sbjct: 210 SRIKEFYQRLENYPNRTTQLALQFLILTFVRVGELRQGEWTEIKGNEWHIPAEKMKMKRP 269

Query: 233 ITVELPDGFMKLLAMTPI----GKETFFINNDKQKMNATQFSIWFKA--KATKAGVNKSA 286
             V L    +++L    I        F + N  Q+++    S+  K       A    + 
Sbjct: 270 HVVPLSSWALRILEELKIINKYDCPYFIVGNRNQQISDNTLSVAMKRLGYQNIA----TP 325

Query: 287 HGVRKFSATISADAGA-TAHELMATYGWKTVDQA-ETYTKG---ADRIRLGIKNSRRISS 341
           HG R  ++TI  ++G      +         +     Y +     +R R+    S  I S
Sbjct: 326 HGFRAMASTILNESGLWNPDAIERQLSHVDRNAVRAAYNRAEYLEERHRMMEWYSDYIKS 385

Query: 342 VVD 344
           +++
Sbjct: 386 LIN 388


>gi|225388659|ref|ZP_03758383.1| hypothetical protein CLOSTASPAR_02395 [Clostridium asparagiforme
           DSM 15981]
 gi|225045257|gb|EEG55503.1| hypothetical protein CLOSTASPAR_02395 [Clostridium asparagiforme
           DSM 15981]
          Length = 406

 Score = 88.9 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 57/325 (17%), Positives = 106/325 (32%), Gaps = 49/325 (15%)

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRSGVES 125
           K  T+  L ++Y +    G++   ++   +   + +   K G      +     +     
Sbjct: 83  KKMTVCQLYAKYIR--QRGNVKRGTKKGRKQLMNLLSEDKLGAASIENVKLSDAKELALR 140

Query: 126 RKHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCL-SV-ERPKRKTEGIRPWTKE--- 177
            +      ++      S++  F  AV+ + +  NP   ++ E     TE   P + E   
Sbjct: 141 MQEKGIAFNTISNHKRSLKAAFFLAVQDDCLRKNPFDFNINEVLNDDTELKVPLSPEQEK 200

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----------------NNI 221
           ++  F        +       LL +GLR S+ C      L                  + 
Sbjct: 201 ELLNFIQEDKVYQKYYDEIVILLETGLRVSELCGLTDTDLDFEKGYVKVDHQLLRSAEDG 260

Query: 222 FSIKTQKTGTIIT-VELP----DGFMKLLAMTPIGKETF--------FINNDKQKMNATQ 268
           F I+T KT + I  + +     + F ++L      K           F+N D     A  
Sbjct: 261 FYIETPKTESGIRQIPMTAAASEAFKRVLKNRKGAKPIIIDGYAHFLFLNRDGLPKTAAN 320

Query: 269 FSIWFK------AKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
           +   FK       K  +A + K  + H +R    T  A+AG     L    G   +    
Sbjct: 321 YDAMFKCLLKKYNKCHEAPLPKVMTPHTMRHTFCTKKANAGMNPKALQYIMGHANIVMTL 380

Query: 321 TYTKGADRIRLGIKNSRRISSVVDS 345
            Y   A+          R+ + +D 
Sbjct: 381 NYYAHANFDS-AKAEMDRLDTGMDV 404


>gi|223985058|ref|ZP_03635156.1| hypothetical protein HOLDEFILI_02460 [Holdemania filiformis DSM
           12042]
 gi|288870485|ref|ZP_06114257.2| prophage LambdaCh01, site-specific recombinase, phage integrase
           family [Clostridium hathewayi DSM 13479]
 gi|223963030|gb|EEF67444.1| hypothetical protein HOLDEFILI_02460 [Holdemania filiformis DSM
           12042]
 gi|288866967|gb|EFC99265.1| prophage LambdaCh01, site-specific recombinase, phage integrase
           family [Clostridium hathewayi DSM 13479]
          Length = 465

 Score = 88.9 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 64/354 (18%), Positives = 103/354 (29%), Gaps = 84/354 (23%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSG------ 122
           TL  L+ EY       + A+++  S      + I    GD     IT + +         
Sbjct: 62  TLNDLLDEYMSIYGVNTWAMSTYESRRGLARNYITPIIGDMLLSDITPRMMDKYYRDLLS 121

Query: 123 -----VESRKHT-----PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
                V +RK T     P +  +    +R  F  AVR E ++ NP L+   PK + +   
Sbjct: 122 VKTVSVNNRKPTSEYLTPHTVREIHKLLRSAFNQAVRWELISRNPVLNATLPKEEHKERD 181

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--------------- 217
            WT E + +      +     LA        LR  +        +               
Sbjct: 182 IWTAETLSKAMEVCDDPILS-LALNLAFSCSLRIGEMLGLTWDCIDIAPQSIENGSAYIF 240

Query: 218 -----------------QNNIFS--------------IKTQKTGTIIT-VELP------- 238
                               +                +K  KT T I  V LP       
Sbjct: 241 VNKELQRVTRGALDDLSDKGVIKKFPPCIASTHTALVLKEPKTKTSIRRVYLPKTVAYML 300

Query: 239 -------DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVR 290
                  D  M L     I     F +++ + M +   +  F     + G+     H +R
Sbjct: 301 VERKKEIDELMDLFGDEYIDNNLVFCSSNGRPMESQVINRAFNKLIKENGLPHVVFHSLR 360

Query: 291 KFSATI-SADAGATAHELMATYGWKTVDQ-AETYTKGADRIRLGIKNSRRISSV 342
             S T      G     +    G   V   A+ Y+   D  R    N++R+   
Sbjct: 361 HSSITYKLKLNGGDMKSVQGDSGHAQVKMVADVYSHIIDEDR--CINAQRLEEA 412


>gi|254383832|ref|ZP_04999180.1| phage integrase [Streptomyces sp. Mg1]
 gi|194342725|gb|EDX23691.1| phage integrase [Streptomyces sp. Mg1]
          Length = 426

 Score = 88.9 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 49/378 (12%), Positives = 110/378 (29%), Gaps = 68/378 (17%)

Query: 31  RRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVN 90
           +RIR+        +      LT                +T+   ++ +        L  N
Sbjct: 44  KRIRVYGTTRKDAMTK----LTEKIAASNRGLPVAAADSTVSAYLAYWLDGVAVHHLREN 99

Query: 91  SRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHT-------------------- 129
           +   + +     +    G     ++TT+ +R+ ++  + T                    
Sbjct: 100 THTRYAASIRLHLNPGLGVKKLARLTTRDVRTFLDGLRTTCQCCAQNRDSVRRSCCAIGQ 159

Query: 130 -------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
                  P +       ++   + AVR++ +  N   +V+    +    +P T  + +Q 
Sbjct: 160 CCGKRLSPLTVTYVHAVLKSALEHAVREDELPRNVARNVKTTTPRPRRFQPLTAAEARQL 219

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-----TQKTGTIITVEL 237
               + G +    +E  L +GLR  +      + L  +  +        +     +TV  
Sbjct: 220 L-HAANGDRLNALYELALRTGLRKGELLGLHWEDLDLDGGTATIHRSLQRTRSQGLTVLN 278

Query: 238 PDGFMKLLAMTP--------------------------IGKETFFINNDKQKMNATQFSI 271
                    +                                  F   + Q ++ T  + 
Sbjct: 279 TKTLASDRRIALPTECLNSLKTHQERQQEERQTAGTSWTDNGLVFTTPNGQPLDPTNLTR 338

Query: 272 WFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADRI 329
            F+     A +     H +R  +AT+  + G     +    G   +   A  Y     R+
Sbjct: 339 RFRRLLHGAELRTIRFHDLRHSTATLLLEQGVDLVVIKELLGHAHIGVTAGVYAHV--RL 396

Query: 330 RLGIKNSRRISSVVDSDD 347
           RL  +    + S++   D
Sbjct: 397 RLQHQAIDTLGSILSPTD 414


>gi|56698711|ref|YP_166466.1| phage integrase family site specific recombinase [Ruegeria pomeroyi
           DSS-3]
 gi|56680448|gb|AAV97114.1| site-specific recombinase, phage integrase family [Ruegeria
           pomeroyi DSS-3]
          Length = 375

 Score = 88.9 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/257 (14%), Positives = 84/257 (32%), Gaps = 14/257 (5%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWA 147
              +   +    ++     GD   R++  + +   V     TPS       ++R +  W 
Sbjct: 109 KPRTVADYRRLLNRHFNFKGD--VREVYRQQVMRVVSGLSATPSEQSHAYVAIRTMMNWC 166

Query: 148 VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-FKSFWSEGSQPRLAFEFLLYSGLRC 206
           VR   V     +     ++ +E  R  +++++++ +              + L+ +G R 
Sbjct: 167 VRHGLVDH--SVVPPMKQKTSERDRVLSEDELRKVYLRAQETPFAFGPIVQLLILTGQRR 224

Query: 207 SDSCRAGVQHLQNNIFSIKTQ--KTGTIITVELPDGFMKLLAMTPIGKETFF--INNDKQ 262
           ++  +     + +   +      K        L     +++A  P   +  F    + ++
Sbjct: 225 TEIGQMRRSWISHGEVAFPKGFAKNKREHRFPLSPLSQQVVADLPNTGDLLFPAATDFEK 284

Query: 263 KMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ---A 319
                 +      +  +A    + H +R+  ATI A  G   H         +      A
Sbjct: 285 AFTTWAWHKKRFDEGLEAVEPYTLHDLRRTFATIHAKIGTPIHVTEKLLNHVSGTISGVA 344

Query: 320 ETYTK--GADRIRLGIK 334
             Y +   AD +R    
Sbjct: 345 AVYNRHSYADEMRHAAS 361


>gi|323973807|gb|EGB68981.1| phage integrase [Escherichia coli TA007]
          Length = 336

 Score = 88.9 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 44/238 (18%), Positives = 80/238 (33%), Gaps = 13/238 (5%)

Query: 93  ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFLTSMRVLFKWAVR 149
            S+    ++    +G+    +IT   I      R+     P++  + L ++  +F   + 
Sbjct: 80  QSYLRKIERFETMTGNPCAFQITKSLITQYCAQRRGEGIKPTTINRDLITLGGMFTTLIE 139

Query: 150 QE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD 208
            E Y   +P    ++ K +T      T E++    +  S     R      L +G R  +
Sbjct: 140 SELYNGEHPFRGFKKLKEQTAETGYLTLEEIDALLAALS--GDNRKIAVLCLSTGARWGE 197

Query: 209 SCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ 268
           + R   +++ +N  S    KT T  TV + D     +     G   F       + +   
Sbjct: 198 AARLKAENVIHNRVSFVKTKTNTPRTVPISDDVAAYVVGKTRG---FLF----PEASYAD 250

Query: 269 FSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           F    K         ++ H +R   AT     G     L    G   + Q   Y   A
Sbjct: 251 FRRTLKEVKPDLPAGQATHALRHSFATHFMINGGNIITLQRILGHTKIAQTMVYAHFA 308


>gi|170720487|ref|YP_001748175.1| integrase family protein [Pseudomonas putida W619]
 gi|169758490|gb|ACA71806.1| integrase family protein [Pseudomonas putida W619]
          Length = 396

 Score = 88.9 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 52/266 (19%), Positives = 86/266 (32%), Gaps = 30/266 (11%)

Query: 89  VNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHT-PSSAIQFLTSMRVLFKW 146
             +R ++ S      +    D     IT+  +R  +   K T P      +  +  +F+ 
Sbjct: 102 EGTRKNYRSALQVYWVPYLADKPIDTITSVLLRKIMNDIKWTSPVRRKGVVGLLVSIFQQ 161

Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA-----FEFLLY 201
           AV  E +  NP LS+   K     + P+TKE+     +   E +    A     FEF  Y
Sbjct: 162 AVTDELIVRNPALSIPGAKVPKREVDPFTKEEADSIIAHLYETTSGMTAIYAAYFEFCFY 221

Query: 202 SGLRCSDSCRAGVQHLQNN-------IFSIK-----TQKTGTIITVELPDGFMKLLAMT- 248
           +G+R  +        +             I+       KT     V L D  +  L    
Sbjct: 222 TGMRPGEVMALRWSEIDRRVKTANVCRIQIRGVIQDRTKTKRSRKVLLNDRALHALEKAR 281

Query: 249 ----PIGKETFFINNDKQK-----MNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISA 298
                     F  +    +      + T    ++ A   K G+  +  +  R   AT+  
Sbjct: 282 PLTEARSDYVFAPSGTGDRSEMFIRSETSQKRYWLAALRKLGIRRRRMYDTRHTYATMCL 341

Query: 299 DAGATAHELMATYGWKTVDQAETYTK 324
            AG     + A  G        TY K
Sbjct: 342 MAGMNPAFIAAQLGHSVQVLLSTYAK 367


>gi|325680558|ref|ZP_08160102.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
 gi|324107749|gb|EGC02021.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
          Length = 379

 Score = 88.9 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 40/244 (16%), Positives = 86/244 (35%), Gaps = 36/244 (14%)

Query: 84  WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSM 140
           +  +   ++  + +   + +      D +   T  + +G       P    +A+  L+ +
Sbjct: 90  YTRMRQLTKRVYPAIGHKKLDNITSRDVQAFITDMLLNGRNFNSGKPLSRKTAVHHLSFI 149

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ-QFKSFWSEGSQPRLAFEFL 199
             +F +AVR   ++ NPC  V  PK + +    +T+++++  F+    E  + ++     
Sbjct: 150 SDVFNYAVRMGMLSDNPCRRVFIPKGEIKEKEIYTRDEVKTMFEKLKDEPLKYQVYLMLA 209

Query: 200 LYSGLRCSDSCRAGVQHLQ--NNIFSIKT------QKT---------GTIITVELPDGFM 242
           +YSG R S+      + +   N I  ++       +K           +    + P   M
Sbjct: 210 IYSGFRRSEMLGLEWKDIDFENEIIHVRRTSQYTKEKGIYTDTTKTKKSKRVSKFPPTIM 269

Query: 243 KLLAMTPI--------------GKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAH 287
            LL                     +  F   + + MN      W K    + GV   + H
Sbjct: 270 DLLKRFKKEQDEYANQLGSKWEEHDRLFTKWNGEPMNPQTPFEWLKGYCERIGVPFHNIH 329

Query: 288 GVRK 291
            +R 
Sbjct: 330 SLRH 333


>gi|299138946|ref|ZP_07032123.1| integrase family protein [Acidobacterium sp. MP5ACTX8]
 gi|298599100|gb|EFI55261.1| integrase family protein [Acidobacterium sp. MP5ACTX8]
          Length = 382

 Score = 88.9 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 51/342 (14%), Positives = 101/342 (29%), Gaps = 40/342 (11%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP---------RKKPT 69
           G+  +  RK  G        +      A +   TG          P         +    
Sbjct: 33  GRTRW-VRKSFGSDRAAAVSYVE---KARLIERTGEGLLPTTARKPVLTFTEADRQAASV 88

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ES 125
           T+  L  +Y             +++      +I    G      +    I   +      
Sbjct: 89  TVDELADDYLAFVQANPTEFKDQVNPPRVIKEIKEVFGSHPATTLEAHQIDDWLTEIQRK 148

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS- 184
           R   P +  +  ++   +++ A+++  V +NP  +V + K   +  +  T  ++++ ++ 
Sbjct: 149 RDLAPGTVNRIKSTFSGIYRRALQRSKVKVNPVRNVPQRKMDNKIGKRLTDAEIEKLRNA 208

Query: 185 -FWSEGSQPRLA-------------FEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQK 228
              S  S+  LA              +F L +  R S+        +   N   +    K
Sbjct: 209 IRKSGESKAHLAQYQPDVIEHRLCELDFALGTAWRKSEQYGLRWPQVDFKNKKITALNTK 268

Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI-----WFKAKATKAGVN 283
            G     E+     K L      K +              F+I     WF      A + 
Sbjct: 269 NGETYVCEMMGLAEKALRRLQKLKRSRLAGRKYDAPTDAVFAIGDNKKWFAQATKDAKLK 328

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
              H +R  + +I A+  A    + A    K+      Y   
Sbjct: 329 IRWHDLRHTAISIVAEK-APFAVVQAFSRHKSSSMVMRYAHA 369


>gi|291515442|emb|CBK64652.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
          Length = 409

 Score = 88.9 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 43/284 (15%), Positives = 98/284 (34%), Gaps = 30/284 (10%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR------KSGDFDYRKITTKHIRSGV 123
           T    + ++ +       A+ + + +    + +        K  D  ++++  + I   V
Sbjct: 112 TFDAYLKDFEEKRAGKDRAIGTLVCYRKARNYLAAFLRYEYKVEDIPFKELKREFIERYV 171

Query: 124 E----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
                 R+  P S    +  ++++   A +  ++  +P     R        R  ++ ++
Sbjct: 172 VYLSTVRRMLPGSIHTPIKKLKLMTYTAFKNGWITTDPFSGF-RISVTYRDRRFLSESEL 230

Query: 180 QQFKSFWSEGSQ---PRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGT 231
           Q   +      +    R  F F  ++GL  +D  +   + +  +         +  KTGT
Sbjct: 231 QAVMNVRLPNYKTAIVRDIFVFCCFTGLCYADVKKLSREDIHTDERGDMWIIDQRTKTGT 290

Query: 232 IITVELPD---GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286
              V+L       ++  +   +  +  F   D   MN +      +  A  AG+  N + 
Sbjct: 291 QFRVKLLPVAKQLVEQYSRLQLPDDKVFPVKDDNSMNMS-----LRHVARHAGLSFNPTT 345

Query: 287 HGVRKFSAT-ISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           H  R   AT ++   G     +    G K +   + Y K  +  
Sbjct: 346 HTGRHTFATTVTLTQGVPLETVSKMLGHKHITTTQIYAKITNDK 389


>gi|260664724|ref|ZP_05865576.1| integrase [Lactobacillus jensenii SJ-7A-US]
 gi|260561789|gb|EEX27761.1| integrase [Lactobacillus jensenii SJ-7A-US]
          Length = 383

 Score = 88.9 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 45/376 (11%), Positives = 106/376 (28%), Gaps = 43/376 (11%)

Query: 13  KERTRHGKIIYYFRKGHGRRIRLPYPHES-------------TFIPAYMS-ALTGSTPKR 58
              T+ GK+ +  R    R+  +  P  S              F     +          
Sbjct: 2   AYITKRGKV-WQVRHSRRRKKIVQQPDGSYKVDYVLEQVSKSGFKTKRTAQEYAAQLELE 60

Query: 59  EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH 118
                      +      ++        +   + + +     ++    G    +KI    
Sbjct: 61  SAKGYDITANPSFAEYFEDWYIETKKDKIRNTTLVKYIQDSKRLYDYFGFEKLKKIKRID 120

Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK--RKTEGIRPWTK 176
            +  + +    P S        R   ++A+R   ++ +    VE     +++   +  + 
Sbjct: 121 YQRFMNTLDLAPDSVKMINRRYRACIRYAIRDGIISRDFTDGVELKGNDKQSRATQYLSL 180

Query: 177 EDMQQFKSFWSEGSQPR----LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT--- 229
            ++++  S       PR          L +G R  +        L +   +I+  K+   
Sbjct: 181 AEIKKLLSVAIATRNPRYTSSYMIITALLTGARYGEIAGLQWSDLDSKANTIRINKSYNQ 240

Query: 230 -----------GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ--FSIWFKAK 276
                       +I T+ +    +KL+         F   +   K+           +  
Sbjct: 241 NTKTNGPTKNLQSIRTIIVSPTLVKLMLELKQNGSNFIFGSVGLKIPPATNNVGSVLRNL 300

Query: 277 ATKAGVNKS---AHGVRKFSATISADAGATAHELMATYGWKTVDQAET---YTKGADRIR 330
             KA + K     H +R     +    G   + +    G K ++       Y    D+ +
Sbjct: 301 MKKAKITKKDFVFHSLRHCHVALLHSQGIDWYAISKRLGHKDLNVTLKIYAYMLDEDKRK 360

Query: 331 LGIKNSRRISSVVDSD 346
                S ++  +V  +
Sbjct: 361 SDTLISNKLEKIVQQN 376


>gi|261366421|ref|ZP_05979304.1| site-specific recombinase, phage integrase family [Subdoligranulum
           variabile DSM 15176]
 gi|282571682|gb|EFB77217.1| site-specific recombinase, phage integrase family [Subdoligranulum
           variabile DSM 15176]
          Length = 403

 Score = 88.9 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 51/385 (13%), Positives = 106/385 (27%), Gaps = 73/385 (18%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKGH--GRRIRLPYPHESTFIPAYMSALTGSTPKREYI 61
             ++P +     T  G   Y  R     G+ + L            + A         + 
Sbjct: 5   KTQIPKY--GTITLKGIQYYRTRITDADGKELSLYAATCEELYEKQLEARKQVEEIIFHR 62

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIR 120
             P       KWL+ +   SA    ++ ++   +     + II+  G+    ++T   IR
Sbjct: 63  QHPTVAEYGEKWLLMQ---SAK---VSASTLRGYTRDMTNYIIKPLGEMYMEEVTADDIR 116

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSV-ERPKRKTEGIRPWTKED 178
             +             +  +     +A  + + +  NPC+ +  +  + ++     T + 
Sbjct: 117 LALVPLSKKSEGLYNKVNMLLKCIFYAAERNQILEHNPCVGISGKGGKPSKKREALTDQQ 176

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQ------- 227
           +         G  P L     LYSGLR  +        +         S++         
Sbjct: 177 VAVLLDTVK-GLPPYLFIMLGLYSGLRREEILALQWDCVFLDEDTPYLSVRRAWRTEHNR 235

Query: 228 -------KTG-TIITVELPDGFMKLLAMTPIG--KETFFINNDKQKMNATQFSIWFK--- 274
                  KT      + +P   +  L  T      +    ++  + + A+QF   ++   
Sbjct: 236 PVISTVLKTPAAKRDIPIPKCLVDCLRETKENSISDYVIADSKGEPLAASQFQRVWQYVV 295

Query: 275 ----------------------------------AKATKAGVNKSAHGVRKFSATISADA 300
                                                     + + H +R    T    A
Sbjct: 296 VRSTKPRNYYKYVNGQSIKYAVTPTLGMTQKNQPKIRYTLDFDVTPHQLRHTYITNLLYA 355

Query: 301 GATAHELMATYGWKTVDQA-ETYTK 324
           G     +    G +      + Y K
Sbjct: 356 GVDPKTVQYLAGHENSKTTMDIYAK 380


>gi|319937079|ref|ZP_08011488.1| hypothetical protein HMPREF9488_02322 [Coprobacillus sp. 29_1]
 gi|319807857|gb|EFW04442.1| hypothetical protein HMPREF9488_02322 [Coprobacillus sp. 29_1]
          Length = 383

 Score = 88.9 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 47/342 (13%), Positives = 98/342 (28%), Gaps = 46/342 (13%)

Query: 41  STFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFE-SYF 99
            TF  A              I   +    T   +  EY +       A ++++ +  ++ 
Sbjct: 37  KTFNEAKKYERDFKEQLEVLIEQGKSTNKTFNDIYYEYMEIEGEVKYARSTKVYYNVTHE 96

Query: 100 DQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINP 157
             +    G+ +   +   +++        K+ P +         V FK+A+R  Y+  NP
Sbjct: 97  MYVKDTIGNENMGSLKYMNLQQFFNKMSEKYNPPTLKNIKKLFAVTFKYALRVGYIRENP 156

Query: 158 CLSVERPKRKTEGI---RPWTKEDMQQFKSF---------WSEGSQPR-------LAFEF 198
              ++ PK + E        + E++ +             +S G           +A   
Sbjct: 157 IPYIQIPKLQNERRVKVEIISDENLSKIIDALQTVKRTNPYSSGKNAEFTFKSYAMALII 216

Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT--------------------GTIITVELP 238
             Y+GLR S++     Q        +  ++                      +  TVE+ 
Sbjct: 217 GRYTGLRISETLALKRQDFDLENCCMTVRRKIEYSGLKAKDIHTTHQLKSAKSKGTVEIS 276

Query: 239 DGFMKLLAMTPIGK--ETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATI 296
                 L         E    +     +     +   +    +  +N   H +R   AT 
Sbjct: 277 KLLCSYLKKWFEINPFEFVICDGKGNFIKPETLNHRLREVCKELNINFHYHMLRHTYATE 336

Query: 297 SADAGATAHELMATYGWKTVDQA-ETYTKGADR-IRLGIKNS 336
              +G     +        +      YT   +   R  + N 
Sbjct: 337 LVMSGVNPVVVKDLMRHSDISTTWSIYTHPQNEDQRKALDNL 378


>gi|116696315|ref|YP_841891.1| phage integrase family protein [Ralstonia eutropha H16]
 gi|113530814|emb|CAJ97161.1| phage integrase family protein [Ralstonia eutropha H16]
          Length = 346

 Score = 88.9 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 52/280 (18%), Positives = 100/280 (35%), Gaps = 32/280 (11%)

Query: 70  TLKWLISEYRKSAHWGSL-AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128
           ++ +L+ +Y +    G   A   R +  +         G     +     + + ++ R  
Sbjct: 59  SVAYLLEKYARDVSGGKRGAKVERYTLTAMSRDFPEIFG-KRVSEFRKDDVEAYIKKRGS 117

Query: 129 T---------PSSAIQFLTSMRVLFKWAVRQEYVAI----NPCLSVE-RPKRKTEGIRPW 174
           T         P + I+ +T +  +F +A+R+  +      NP   ++ RPK      R  
Sbjct: 118 TTSRFGRKVAPGTIIREVTVLSAVFSYAIRRWEMPFFKRENPAQGIDNRPKSTEHRKRRV 177

Query: 175 TKEDMQQFKSFWS--EGSQPRL-------AFEFLLYSGLRCSDSCRAGVQHLQNNI--FS 223
           + ++++   +     EG+ P+         F+F L + +R  +   A  QH+  +     
Sbjct: 178 SDDEVKLICAQLDYVEGTVPKTSKQWTAWVFQFCLATAMRKGEVLAATWQHVHTDELYIH 237

Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV- 282
           +   K G    V L    + LLA    GK    +      +        F    T+ G+ 
Sbjct: 238 LPETKNGYARDVPLSPRAIALLASLKQGKGAQLVA----PVKYKTLDSAFWRAKTEIGIQ 293

Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           N   H  R  + T  A       EL A  G +++     Y
Sbjct: 294 NLHWHDSRHEATTQLAKKLTNTLELAAVTGHRSLAMLHRY 333


>gi|325103601|ref|YP_004273255.1| integrase family protein [Pedobacter saltans DSM 12145]
 gi|324972449|gb|ADY51433.1| integrase family protein [Pedobacter saltans DSM 12145]
          Length = 389

 Score = 88.9 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 55/282 (19%), Positives = 102/282 (36%), Gaps = 24/282 (8%)

Query: 76  SEYRKSAHWGSL-AVNSRISFESYFDQIIRKSG-DFDYRKITTKHIRSGVES----RKHT 129
            +  +S   G L    +    +S        +G D  + ++T + I          +K  
Sbjct: 114 KQKLESLKMGDLIKTQTYKHKKSRLKHFEEFAGTDILFSELTPEKIAGFDNHLRKVKKLK 173

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            +S      S+    + AV  +    NP    +    K     P   +++++ K  +   
Sbjct: 174 HNSIQAIHVSINGFIREAVECKVNVENPYKKFKIKAYKRGKRDPLEIDELKRLKHLYKAQ 233

Query: 190 SQPRLAFEFL------LYSGLRCSDSCRAGVQHLQNNIFSIKTQKT---GTIITVELPDG 240
               +  E L        +GLR SD+     ++++N + +I T K    G ++TV L   
Sbjct: 234 HLEEIQQEVLRKYLFSCETGLRISDNNALDYENIENKVLTINTVKGESFGVVVTVPLTKY 293

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISA 298
            + L+ +       F      + ++    +   K  A+KA +  N + H  R   AT   
Sbjct: 294 AISLIDIKKRRGPVF------RNISDQVVNRNLKVIASKAEIYRNLTFHSSRDTMATNFI 347

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGAD-RIRLGIKNSRRI 339
           DAG  A  L    G   +     Y K ++ R +  I N   +
Sbjct: 348 DAGGNAETLKELLGHSDIKTTMIYVKISEARKKKLIMNLDSL 389


>gi|262195981|ref|YP_003267190.1| integrase family protein [Haliangium ochraceum DSM 14365]
 gi|262079328|gb|ACY15297.1| integrase family protein [Haliangium ochraceum DSM 14365]
          Length = 434

 Score = 88.9 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 48/371 (12%), Positives = 112/371 (30%), Gaps = 61/371 (16%)

Query: 25  FRKGHGRRIR-LPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAH 83
                G+R R L            + A+     +++ +   R    TL+  I+ + ++  
Sbjct: 44  VWTVDGKRSRKLTDAWREEDAREVLQAVEAEYWRKQRLGVARDVGGTLESAITAFEQAKK 103

Query: 84  WGSLAVNSRISFESYFDQIIRKSG-DFDYRKITTKHIRSGVESRKHT--PSSAIQFLTSM 140
               + N R         +    G +    +++   ++  ++    T  P++   ++T +
Sbjct: 104 MH--SGNWRSQIRKALYPLRDGLGGETIITEVSRDDLQQYLDEGLETNAPTTMRSYMTVV 161

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200
           R  F W   + ++  NP   ++ PK +         E +                    +
Sbjct: 162 RCFFNWLEEEGWIRFNPSRRIKLPKAEQRRGDFLMPEQVGPMLDACFRVRPDFAPMAMAV 221

Query: 201 YSG-LRCSDSCRAGVQHLQ----------------NNIFSIKTQKTGTIITVELPDGFMK 243
             G  R  +      Q +                     +   +   +   V L    ++
Sbjct: 222 VLGSFRKGELVNLRRQDVDLTRRWAFVLENVGDEAEEAAAWSPKTESSRRAVPLHPLLVE 281

Query: 244 LLAM-----TPIGKETFFIN----------------------NDKQKMNATQFSIWFKAK 276
            L        P G  + ++                        D++  + T F    K  
Sbjct: 282 TLRGVEPVKRPDGSLSPWMFPVSDARKRSRFRNRRGALQRAVGDRRAPDTTFFGRCLKLA 341

Query: 277 ATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYT--------KG 325
             +AG+++  + HG+R+    +  D G     +    G + +   A  Y         + 
Sbjct: 342 LAEAGISRPVTMHGLRRTFGVLLQDVGCPDSVIRQAMGHEPIGVTARHYLPRRDAVVQRW 401

Query: 326 ADRIRLGIKNS 336
            DRI + + ++
Sbjct: 402 VDRIEVALPSA 412


>gi|300727862|ref|ZP_07061241.1| integrase/recombinase, phage integrase family [Prevotella bryantii
           B14]
 gi|299774846|gb|EFI71459.1| integrase/recombinase, phage integrase family [Prevotella bryantii
           B14]
          Length = 216

 Score = 88.9 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 67/200 (33%), Gaps = 9/200 (4%)

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           +       +   F W   + Y+  +P   + + K        +T E ++Q +   S   +
Sbjct: 2   TVDNIRRILSSFFSWLEEENYIVKSPVRRIHKVKVGKTVKETYTDEALEQMRDHCS-NIR 60

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDG----FMKLLA 246
                + L  +G+R  +  R     +   N   I T K      V           K + 
Sbjct: 61  DLALIDLLASTGMRVGELVRLNKNDIDYQNRECIVTGKGDKQRKVYFDARTKIHLQKYVN 120

Query: 247 MTPIGKETFFIN--NDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGAT 303
                 +  F++  +   ++  +   I  +    +  + K   H  R+  AT++ D G  
Sbjct: 121 SRTDTNDALFVSLLSPNNRLEISGVEIRLRRLGRELNIPKVHPHKFRRTLATMAIDKGMP 180

Query: 304 AHELMATYGWKTVDQAETYT 323
             ++    G +++D    Y 
Sbjct: 181 IEQVQHLLGHQSLDTTLQYA 200


>gi|325676755|ref|ZP_08156428.1| phage integrase family site-specific recombinase [Rhodococcus equi
           ATCC 33707]
 gi|325552303|gb|EGD21992.1| phage integrase family site-specific recombinase [Rhodococcus equi
           ATCC 33707]
          Length = 346

 Score = 88.9 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 44/314 (14%), Positives = 95/314 (30%), Gaps = 58/314 (18%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQII----RKSG----DFDYRKITTKHIRSG 122
           L+   +E+         + ++  ++   F  I      ++G          IT   ++  
Sbjct: 13  LEAWFAEFLLHRSTAKPSPHTLKAYRQDFAAISGFLSEQTGVPVSALSVEAITKPSMQQA 72

Query: 123 VESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
             S   T   +S  +  ++   L  +    + +  NP  +V RPK      +    + + 
Sbjct: 73  FASFAATHEVASIRRCWSTWNTLCDYLFSIDTIVANPMSAVLRPKAPKRIPKALPADAVT 132

Query: 181 QFKSFWSE---------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---------NNIF 222
           +      E         G +        L +G+R S+     +  ++           + 
Sbjct: 133 RLIQTLQEDDTDGVRPWGERDFAIILTALLTGMRSSELIAVDLGDVRSAPDPSGGSARVI 192

Query: 223 SIKTQKTGTIITVE-------LPDGFMKLLAMTP-----------------IGKETFFIN 258
            ++ + +   +          L       +A  P                    +  F+ 
Sbjct: 193 RVRGKGSKERVATAEPALVATLTGYLESRIARFPETTKRRVPSGATPWQHFRSTDPLFVG 252

Query: 259 NDKQKMNATQFSIWFKAKATKAGVNKS------AHGVRKFSATISADAGATAHELMATYG 312
            D  ++              +AG+N         H  R   AT  AD   +   LM   G
Sbjct: 253 ADGTRITRGTLQYRVLRAYRRAGINGERAKGALTHQFRHTFATNMADENVSIFTLMRMLG 312

Query: 313 WKTVDQAETYTKGA 326
            ++++  + YT+GA
Sbjct: 313 HESMNTTQVYTEGA 326


>gi|116622414|ref|YP_824570.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116626674|ref|YP_828830.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116225576|gb|ABJ84285.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116229836|gb|ABJ88545.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 412

 Score = 88.9 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 38/266 (14%), Positives = 81/266 (30%), Gaps = 28/266 (10%)

Query: 85  GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSG--VESRKHTPSSAIQFLTS 139
             L+ ++ + +    +Q       +    +  I   H+       +R+ +P  A   +T+
Sbjct: 131 RGLSPSTLLHYVPVAEQFLAERFHNAVPSFAMIRATHVTGFVLRHARQLSPVRAGLMVTA 190

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKR--KTEGIRPWTKEDMQQFKSFWS----EGSQPR 193
           +R  F++   +  +A +    V        +   R      +++           G +  
Sbjct: 191 LRSFFRYLRHRGVIATDLAACVPTVPNWSLSTLPRFLPAAAVERILECCDRTTSVGRRNH 250

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVEL----PDGFMKLLAM 247
                L   G+R  +     +  +       +I+  K G    + L           L  
Sbjct: 251 TILLLLARLGVRAGEVVGLSLDDIDWSTGQITIR-GKGGKSAQLPLVNDVGSALADYLRH 309

Query: 248 -TPIGKETFFINNDKQKM----NATQFSIWFKAKATKAGVNKSAHG----VRKFSATISA 298
             P           +  +    N++  S   +     AGV  SAH     +R   AT   
Sbjct: 310 DRPRSATRRVFLRHRAPLVGFGNSSTISSLVRRALKHAGVE-SAHTGAHVLRHSLATSLL 368

Query: 299 DAGATAHELMATYGWKTVDQAETYTK 324
             G +  E+      ++ +    Y K
Sbjct: 369 RQGGSLDEIGELLRHQSPNTTAIYAK 394


>gi|71274529|ref|ZP_00650817.1| Phage integrase [Xylella fastidiosa Dixon]
 gi|71898068|ref|ZP_00680254.1| Phage integrase [Xylella fastidiosa Ann-1]
 gi|170730782|ref|YP_001776215.1| phage-related integrase [Xylella fastidiosa M12]
 gi|71164261|gb|EAO13975.1| Phage integrase [Xylella fastidiosa Dixon]
 gi|71732042|gb|EAO34098.1| Phage integrase [Xylella fastidiosa Ann-1]
 gi|167965575|gb|ACA12585.1| phage-related integrase [Xylella fastidiosa M12]
          Length = 410

 Score = 88.9 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 61/366 (16%), Positives = 114/366 (31%), Gaps = 50/366 (13%)

Query: 15  RTRHGKIIYYFR---KGHGRRIRLPYPHE-------STFIPAYMSALTGSTPKREYINSP 64
            T  GKI Y  +    G   RI +  PH              ++ ++      R      
Sbjct: 34  VTPTGKITYIVQGRVNGSSPRISI-GPHGVFTVDQARDVAREHLRSMRMGIDLRAVAKKE 92

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
             +  TL+ +   Y++      L  +S+   E +             + I  + +     
Sbjct: 93  AAQRVTLRDVADGYKRD---RPLKDSSKAEIERHVTTTFEAWLKKPLKDINREAVTKRFN 149

Query: 125 SRKHT--------PSSAIQFLTSMRVLFKWAVRQ-------EYVAINPCLSVERPKRKTE 169
             K          P+ A Q    +R LF +A+R+         +  NP   V+   +K  
Sbjct: 150 EIKTKGTTGNGPAPAQANQAFAVLRALFNYAIREYREPDGSPVLTDNP---VDVLYKKWA 206

Query: 170 GIRPWTKE-------DMQQFKSFWSEGSQPRLAFE------FLLYSGLRCSDSCRAGVQ- 215
            ++P T          +  F +   E +  R           L+ +GLR  +        
Sbjct: 207 PLKPRTSRVPDSKVGAVWSFLTKAREQAYNRDTLASIDLVMLLMLTGLRIGECSELTWDR 266

Query: 216 -HLQNNIFSIKTQKTGTIITVELPDGFMKLL-AMTPIGKETFFINNDKQKMNATQFSIWF 273
            +L+     I   K    + + L    ++LL     +    F  ++  +  +        
Sbjct: 267 VNLEEGWIHIPDPKNSNPVWLPLSTQAVQLLTTRQRVKGSPFVFSSWGKAGHIKDPRDTM 326

Query: 274 KAKATKAGVNKSAHGVRKFSATI-SADAGATAHELMATYGWKTVD-QAETYTKGADRIRL 331
           K  +  AG   + H +R+   TI  A  G   H++            A  Y + +    L
Sbjct: 327 KKVSEVAGTKITPHDLRRTYTTIGVASVGIDLHKVELLTNHVPKGVTARHYLETSHLQYL 386

Query: 332 GIKNSR 337
             +  R
Sbjct: 387 KPETQR 392


>gi|307611444|emb|CBX01112.1| hypothetical protein LPW_28111 [Legionella pneumophila 130b]
          Length = 412

 Score = 88.9 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 57/293 (19%), Positives = 117/293 (39%), Gaps = 30/293 (10%)

Query: 56  PKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT 115
           PK +     +K+ +T+K LI  +  +      A   +I      D II   G+     + 
Sbjct: 83  PKEQIAEQKQKEQSTVKNLILHWYTNYIEKHRAQPLQIWQHIKVD-IIPLLGNKKLENLK 141

Query: 116 TKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL--------SVERPK 165
           T+ I   ++    + +P  A + L++++  F +AV +  + +NP +         +E+P+
Sbjct: 142 TREITQALDKIVGRGSPVHANKVLSTLKQAFNYAVSRGEMLLNPAMTIRARDIGGIEKPR 201

Query: 166 RKTEGIRPWTKEDMQ---QFKSFWSEGS--QPRLAFEFLLYSGLRCSDSCRAGVQ--HLQ 218
                 R  T ++++   QF      G+  Q R A + +L +G+R  +   A       +
Sbjct: 202 E-----RYLTLDEVKTLWQFLDSEEHGTSFQIRAALKIILLTGVRTGEIRVARWSEFDFE 256

Query: 219 NNIFSIKTQ--KTGTIITVELPDGFMKLLA--MTPIGKETFFINNDKQKMNATQF--SIW 272
           N++++I  +  KT  ++ + L +   K+L         E      D Q + + +      
Sbjct: 257 NSLWTIPAENTKTNIVMRIHLTEMTKKVLRELQAHSDSEYVITGADGQSILSDRAMPRAV 316

Query: 273 FKAKATKAGVNKSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTK 324
            + ++     + +AH +R+  AT            +    G K      TY K
Sbjct: 317 IRIQSRVGIPHWTAHDLRRTFATQLGQTLNVDPVVIEKCLGHKMPKIMATYNK 369


>gi|307275392|ref|ZP_07556535.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX2134]
 gi|306508026|gb|EFM77153.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX2134]
          Length = 384

 Score = 88.9 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 71/387 (18%), Positives = 129/387 (33%), Gaps = 66/387 (17%)

Query: 14  ERTRHGKIIYYFRK--GHGRRI-RLPYPHESTFIPAYMS--ALTGSTPKREYINSPRKKP 68
            + ++G+  +YF+   G      +  Y  +  F     +  AL     + +    P    
Sbjct: 7   YQKKNGEKAWYFKIYLGTDPLTGKKKYTTKRGFRTQKEAKIALARLEMEIQKNGIPSSTN 66

Query: 69  TTLK-----WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
            T +     WL   Y+ +    S +  + I F  +   I+   G  +  KI+T + +  V
Sbjct: 67  ITFQEVAFMWL-ENYKNTVKESSYS-RTEIIFRKH---ILPSFGKIEISKISTAYCQKIV 121

Query: 124 ESRKHTPSSAIQ--FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT-----EGIRPWTK 176
            +     SS     F+  M  +FK+A+       NP ++V  PK +      + I+ +TK
Sbjct: 122 NTWHSKGSSKQYPLFINYMNQVFKFAINIGVTNQNPVINVIVPKNQDIITSEKKIKFYTK 181

Query: 177 EDMQQFKSFWS------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----- 225
           + +Q F              +    F  L +SG R  +        L      ++     
Sbjct: 182 DQLQIFLKSIEQSESTYITIRDYTLFRLLAFSGCRIGELLALTWDDLNIKTGELQINKTI 241

Query: 226 ----------TQKTGTIITVELPDG----------------FMKLLAMTPIGKETFFINN 259
                     T KT       + D                  +KL    P      F N 
Sbjct: 242 AKSDHYYVSNTPKTKKSNRTLILDAKTITILKKWKLEQKKYLLKLGYTQPS---HIFTNE 298

Query: 260 DKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           + +       +  +     KA + N   HG R   A++   AGA   E+    G   +  
Sbjct: 299 ENEFTINQAITDRYNIYRKKANLPNIGLHGFRHTHASLLYYAGADHKEVQERLGHANIKT 358

Query: 319 A-ETYTKGADRIRLGIKNSRRISSVVD 344
             +TYT   +  +   K + ++S  + 
Sbjct: 359 TLDTYTHLTNDGK--EKTTEKLSKYIG 383


>gi|291544229|emb|CBL17338.1| Integrase [Ruminococcus sp. 18P13]
          Length = 368

 Score = 88.9 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 48/335 (14%), Positives = 105/335 (31%), Gaps = 39/335 (11%)

Query: 20  KIIYYF--RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISE 77
           ++IY +   +G  ++ +           A+         + +   +      T +     
Sbjct: 11  RVIYRYTDSRGERKQTQKRGFSTKKEAQAW--------EREQMNKTESSLDMTFESFSEI 62

Query: 78  YRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR------KHTP 130
           Y +      L  N+  + E     ++I   G      I  K + +              P
Sbjct: 63  YFEDMK-KRLKDNTWHTKEHILRTKLIPFFGKRKMCDIQPKDVIAWQNEMLEGSTKTGKP 121

Query: 131 SSAIQFLTS---MRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQQFKSFW 186
            S +   T    +  +F +AV+   +  NP        K K   +  WT+E+ +QF    
Sbjct: 122 YSPVYLKTLHNQLSAVFNYAVKFYGLPSNPAAKAGNMGKAKNREMLFWTQEEYKQFAEVM 181

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT----------------G 230
            +      AFE L + G+R  +              ++   K+                 
Sbjct: 182 MDKPVSFYAFEMLYWCGIREGELLALTPADFDFEKQTVSITKSYQRIKGQDIITDPKTAK 241

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGV 289
           +   V++PD   + +            ++    +  +         A ++GV +   H +
Sbjct: 242 SNRVVKMPDFLSQEIQDFISQLYGIGEHDRMFMITKSYLHHEMDRGAKESGVKRIRIHDL 301

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           R    ++  + G +A  +    G +++D    Y  
Sbjct: 302 RHSHISLLIEMGFSAVAIADRVGHESIDITYRYAH 336


>gi|291523379|emb|CBK81672.1| Site-specific recombinase XerD [Coprococcus catus GD/7]
          Length = 355

 Score = 88.9 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 42/276 (15%), Positives = 90/276 (32%), Gaps = 23/276 (8%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE---SR 126
            +     Y        L  ++  + +   + +I+   G+     IT   IR         
Sbjct: 58  FENFWKMYCADME-TRLREHTIRTKKYIVELKILLYFGNKRVNDITAADIRQWQNELIKM 116

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQQFKSF 185
            ++P+        +  +F +AVR   +  NPC       K K E +  WT E+ ++F   
Sbjct: 117 GYSPTYLKTINNQLSAIFNYAVRYYDLKSNPCAKAGSMGKSKAEEMDFWTGEEFRKFIDS 176

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT---------------- 229
                   +AF  L ++G+R  +      + +     +I   K+                
Sbjct: 177 VMNKRLSYMAFMTLYWTGMRLGELLALNPKDVDLEKRTITITKSYQRLGKKDVITPPKTP 236

Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHG 288
            +   + +P+     +            N+    +         +    ++GV +   H 
Sbjct: 237 KSKRVITIPEFLAADIKDYIDSSYELQENDRLFPITKYYLEHEMQRGIKESGVKRIRVHD 296

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +R +  ++    G +A  +    G ++VD    Y  
Sbjct: 297 LRHYHVSLLISMGFSAVSIGNRVGHESVDITYRYAH 332


>gi|291282279|ref|YP_003499097.1| putative integrase for prophage CP-933O [Escherichia coli O55:H7
           str. CB9615]
 gi|290762152|gb|ADD56113.1| Putative integrase for prophage CP-933O [Escherichia coli O55:H7
           str. CB9615]
 gi|320659518|gb|EFX27087.1| putative integrase for prophage CP-933O [Escherichia coli O55:H7
           str. USDA 5905]
          Length = 427

 Score = 88.9 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 59/363 (16%), Positives = 109/363 (30%), Gaps = 60/363 (16%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKR-------- 58
           L P+  K   R+ K+ + +R     +       +        +       ++        
Sbjct: 14  LSPYFDK---RNNKVYWRYRHPITGKNHGLGSIDQKLAETIAAEANSRLARQQMEQMLSL 70

Query: 59  -EYINSPRKKPTTLKWLISEYRKS----AHWGSLAVNSRISFESYFDQIIRKSGDFDYRK 113
            E I S     +T+   ++ YRK        G + +N+     +       + G      
Sbjct: 71  QEKIISDTGGSSTVTIFLNNYRKIQQERYENGEIKLNTLKQKAAPLRVFDERFGTRPLDA 130

Query: 114 ITTKHIRSGVESRKHTPSSAIQ--FLTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTE 169
           IT K + S +E  K    + +   F   +  +F+ A +   V    NP  S ++P+ +  
Sbjct: 131 ITVKDVVSVLEEYKARGHNRMGQIFRKVLIDVFREAQQTGDVPPGFNPAESAKKPQVRIS 190

Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229
             R    E M  + +   +G   +      L +G R SD C+     +++    ++ QKT
Sbjct: 191 RQRLTFDEWMMIYNAAEKDGYFLQRGMLLALMTGQRLSDICKMQFSDIRDGYRHVEQQKT 250

Query: 230 GTIITVE-----------------------LPDGFMKLLAMTPIGKETFFINNDKQKMNA 266
           GT I +                        L    +         K           +  
Sbjct: 251 GTRIAIPLALRCDKLNLTLDDVVSSCRDCVLSPWLLHHHHAKGTAK-------RGGMVKP 303

Query: 267 TQFSIWFKAKA-------TKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
              ++ FK             G   S H  R  S  +  + G     L    G       
Sbjct: 304 ATLTVAFKKARDSVDYNWRANGTPPSFHEQRSLSERLFREQGVDTKIL---LGHSNQKMT 360

Query: 320 ETY 322
           + Y
Sbjct: 361 DIY 363


>gi|258508081|ref|YP_003170832.1| phage-related integrase [Lactobacillus rhamnosus GG]
 gi|257148008|emb|CAR86981.1| Phage-related integrase [Lactobacillus rhamnosus GG]
 gi|259649403|dbj|BAI41565.1| phage integrase [Lactobacillus rhamnosus GG]
          Length = 394

 Score = 88.9 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 45/283 (15%), Positives = 89/283 (31%), Gaps = 53/283 (18%)

Query: 95  FESYFD-QIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQ 150
           +       II K GD    K T K  +  + S      + ++      ++    K AV  
Sbjct: 93  YRYNLKKYIIPKIGDIRLAKYTLKEHQEFISSLFNDGLSLNTVKLINGTLHNALKKAVAI 152

Query: 151 EYVAINPCLSVE---RPKRKTEGIRPWTKEDMQQFKSFWSEGSQP--RLAFEFLLYSGLR 205
            Y+  NP + VE     K  ++ +  WTK+ +  F     E  +P     F  L+  GLR
Sbjct: 153 GYITKNPTVGVEFSAYAKDNSKKLHFWTKDQVGSFIEAAEEDKEPMWLSFFVTLIDCGLR 212

Query: 206 CSDSCRAGVQHLQ---------------------NNIFSIKTQKT---------GTIITV 235
             ++       +                          ++   KT            +  
Sbjct: 213 VGEAMALRWSDIDFNKNTLSVNATRIYRAETGSNAGKIALDRPKTLSSKRTEYMTARVND 272

Query: 236 ELPDGFMKLLAMTPIGKETFFINND-------------KQKMNATQFSIWFKAKATKAGV 282
            L   + +  +   +    F  +++              Q + +   +  F     +AG+
Sbjct: 273 LLQQQYERHFSHGNVQGFRFSTSHNNDFVFTYSSDAKFGQPLRSRATTGAFNRITNRAGL 332

Query: 283 NK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
                H +R   A +  +AG +  ++    G K +   + Y +
Sbjct: 333 PHIRIHDLRHTHAVLMREAGLSLDDIKDDLGHKDISTTQIYAE 375


>gi|220903716|ref|YP_002479028.1| hypothetical protein Ddes_0438 [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219868015|gb|ACL48350.1| hypothetical protein Ddes_0438 [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 337

 Score = 88.9 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 41/320 (12%), Positives = 105/320 (32%), Gaps = 23/320 (7%)

Query: 17  RHGKIIYYFR-KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75
           + G + +  R +  G  +     +  +    +   +     +  + +    + TTL   +
Sbjct: 6   KRGDLQWEARIRRKGWPVTCKTFNTKSDAEKWARDIENEMDRGVFTSRTEAENTTLNEAL 65

Query: 76  SEYRKS--AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
             +       + +  + +  +      +I  K        I +K I   ++ R     + 
Sbjct: 66  ERFIAEYVPRYNNPKLETIKARALQRRKIATKF----MAAIRSKDIADFMQERAAEGVAG 121

Query: 134 IQF---LTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
                 L  +  +F  A+    +    NP   + +PK  +   R    ++ ++  +  S+
Sbjct: 122 NTIRLDLALISRVFNVAISSWGMESLRNPVSRIPKPKVSSGRTRRLEGDEEERLLAACSD 181

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFMKLLA 246
             +P + F     + +R  +      Q++        +   K     TV L    +++L 
Sbjct: 182 SLRPIVRFAI--ETAMRRGEMASLTWQNIDLEKSTAYLPKTKNNEERTVPLSPAAVQILK 239

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADA-GATA 304
               G+          +++    +  F     K G+   + H +R  + +   +      
Sbjct: 240 NLEKGESARVF-----QLSDVSITQAFIKTCQKVGIEGLTFHDLRHEATSRLFERTDLDI 294

Query: 305 HELMATYGWKTVDQAETYTK 324
            E+ +  G KT+     Y+ 
Sbjct: 295 MEIKSITGHKTLQMLARYSH 314


>gi|317501469|ref|ZP_07959667.1| hypothetical protein HMPREF1026_01611 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331088059|ref|ZP_08336980.1| hypothetical protein HMPREF1025_00563 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|316897098|gb|EFV19171.1| hypothetical protein HMPREF1026_01611 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330409015|gb|EGG88474.1| hypothetical protein HMPREF1025_00563 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 594

 Score = 88.9 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/225 (14%), Positives = 72/225 (32%), Gaps = 17/225 (7%)

Query: 115 TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
                   +  +K  P++  +++ ++   +++ + +  V   P       K +       
Sbjct: 321 NIDRFFKYIGEKKLHPNTFNRYVKAVDHFYQYLLTRYQVKRIPFHKEYYLKTEIYRHHDR 380

Query: 175 TKEDM---QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQ 227
           + +++   +  K+        RL +  L   G+R S+ C    +       +    I   
Sbjct: 381 SVDEVISKEILKNLQYFPEDIRLMYLHLWAVGMRISEVCTIKAKEYYRQDDDYWMQIYQV 440

Query: 228 KTGTIITVELPDGFMKLLAMTPIGK-----ETFFINNDKQKMNATQFSIWFKAKATKAGV 282
           K      + +P+   +L+ +    K     +  F N       ++ F    K       +
Sbjct: 441 KMRNYKRIPIPEVLYRLMQVYIKKKRRKPEDYVFQNKKGGAFCSSTFRERMKKLCETYQI 500

Query: 283 NK-----SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
                   AHG R   AT+  D G     +    G    +  + Y
Sbjct: 501 GDGTYIFQAHGYRHTLATVFYDEGVPLQSVRDYLGHAYEEMTQQY 545


>gi|313674555|ref|YP_004052551.1| integrase family protein [Marivirga tractuosa DSM 4126]
 gi|312941253|gb|ADR20443.1| integrase family protein [Marivirga tractuosa DSM 4126]
          Length = 417

 Score = 88.9 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 46/285 (16%), Positives = 90/285 (31%), Gaps = 37/285 (12%)

Query: 76  SEYRKSAHWGSLAVNSRISF---ESYFDQIIRKSGDFDYRKITTKHI----------RSG 122
           S+Y    +  + +  +   +   E YF++ +    +     I               R+ 
Sbjct: 117 SKYHYDQNIHNFSTGTLQHYKVTERYFERFLSTKKNLSDIAIEKVDYKFLLDFEAFLRAW 176

Query: 123 VESRKHTPSSAIQFLTSM---RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
                  P      +  M   R +  +A + +++   P         +       T E++
Sbjct: 177 KPKDHQKPIGHNGIMKHMCRFRKVLNYAYKMDWITDTPFKKY-HISYEKSTRTYLTVEEL 235

Query: 180 QQFKSFWSEGSQ---PRLAFEFLLYSGLRCSDSCRAGVQHL-----QNNIFSIKTQKTGT 231
              +    + ++    R  F F  Y+GL   D       H+            K QKT T
Sbjct: 236 SAIEVKELDIARLEQIRDIFIFSCYTGLSYIDLFNLSKDHIVIGINGEKWIQYKRQKTST 295

Query: 232 IITVELPDGFMKLLAMT---PIGKETFFINNDKQKMNATQFSIWF-KAKATKAGVNK--S 285
             +V L    ++L+      P  KE   +      + + Q +  + K  A   G+ K  +
Sbjct: 296 PFSVPLLPKALELIEKYEDHPKAKENQLL-----PVVSNQKTNAYLKEIADLCGIKKQLT 350

Query: 286 AHGVRKFSAT-ISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            H  R   AT ++   G     +    G   +   + Y K  +  
Sbjct: 351 FHIARHTFATTVTLTNGVPMETVSKMLGHTKLSTTQIYAKVVENK 395


>gi|288925981|ref|ZP_06419910.1| integrase [Prevotella buccae D17]
 gi|288337201|gb|EFC75558.1| integrase [Prevotella buccae D17]
          Length = 409

 Score = 88.9 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 40/253 (15%), Positives = 82/253 (32%), Gaps = 22/253 (8%)

Query: 89  VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG----VESRKHTPSSAIQFLTSMRVLF 144
            ++R   + +  +      D  + ++T   I       +    H  S+  +    ++ + 
Sbjct: 138 HSTRKRLQEFIQR-KYHVSDLAFSQLTENFIYELQAFCLSELGHQQSTFFRVAADLKTVC 196

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-----FKSFWSEGSQPRLAFEFL 199
           + A R+          V   +   +  +   KE + +     F     E    R  F F 
Sbjct: 197 RLAYREGLADTLLFDKVHIERGDKKAPKALDKEALDKLKALRFDELEKEMETARDVFLFA 256

Query: 200 LYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254
            Y+G    D      +HL  +           QKTG +  ++L    ++L+      +  
Sbjct: 257 CYTGAAYCDLMELSKKHLVRDDAGSLWLKFNRQKTGVLCRIKLLPEAVRLIEKMHSDERE 316

Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS-ADAGATAHELMATY 311
             +      +  + +    KA   +AG+    + H  R   AT+   + G     +    
Sbjct: 317 TLL----PFIKYSTYQSCLKALRLRAGIAFPFTTHTARHTFATLITLEQGVPIETVSKML 372

Query: 312 GWKTVDQAETYTK 324
           G   +   E Y K
Sbjct: 373 GHTNLSMTERYAK 385


>gi|283480272|emb|CAY76188.1| Tyrosine recombinase xerD [Erwinia pyrifoliae DSM 12163]
          Length = 235

 Score = 88.9 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 37/208 (17%), Positives = 70/208 (33%), Gaps = 19/208 (9%)

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP-WTKEDMQQFKSFWSE----GSQPR 193
            ++V F+W  +Q  +  NP   +E P+ +    R   + E ++   +        G + R
Sbjct: 1   MLQVWFRWLAKQNLILANPAADLELPRLEKHLPRTILSVEQVEDIVNLCDLXTLQGMRDR 60

Query: 194 LAFEFLLYSGLRCSDSCRA-GVQ-HLQNNIFSIKTQKTGTIITVELPDGFMKLLA----- 246
              E L  +G+R  +  R           I +I   K      + + +  +  L      
Sbjct: 61  TLPELLWSTGIRRGEVARLXTWSADFSRRILTIVQGKGKQDRVIPVGERALWWLRHYLHX 120

Query: 247 -----MTPIGKETFFINNDK-QKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISAD 299
                +   G +  F+  D    + A   +         AG+ K S H  R   AT   +
Sbjct: 121 VRPEIVAVAGCKALFVAMDGVAGLTANGITHAVVPYLRAAGIEKGSCHLXRHAMATQMLE 180

Query: 300 AGATAHELMATYGWKTVDQAETYTKGAD 327
            GA    + A +      + E  +   +
Sbjct: 181 NGADLRWIQAMHASTHPAECEADSHKNN 208


>gi|295837361|ref|ZP_06824294.1| integrase [Streptomyces sp. SPB74]
 gi|197696127|gb|EDY43060.1| integrase [Streptomyces sp. SPB74]
          Length = 426

 Score = 88.9 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 51/363 (14%), Positives = 110/363 (30%), Gaps = 68/363 (18%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDF 109
           LT                +T+   ++ +        L  N+   + +     +    G  
Sbjct: 60  LTEKIAASNRGLPVAAADSTVSAYLTYWLDGVAVHHLRENTHTRYAASIRLHLNPGIGAK 119

Query: 110 DYRKITTKHIRSGVESRKHT---------------------------PSSAIQFLTSMRV 142
              ++TT+ +R+ ++  + T                           P +       ++ 
Sbjct: 120 KLARLTTRDVRTFLDGLRTTCQCCARDRDSVRRSCCAIGQCCGKRLSPLTVTYVHAVLKS 179

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202
             + AVR++ +  N   +V+    +    +P T  + Q+     + G +    +E  L +
Sbjct: 180 ALEHAVREDELPRNVARNVKTTTPRPRRFQPLTATEAQRLL-HAANGDRLHALYELALRT 238

Query: 203 GLRCSDSCRAGVQHLQNNI----------------FSIKTQKT-GTIITVELPDGFMKLL 245
           GLR  +      + L  +                  ++   KT  +   + LP   +  L
Sbjct: 239 GLRKGELLGLHWEDLDLDGGTASIHRSLQRTRSQGLTVLNTKTLASERRIALPTECLSSL 298

Query: 246 AMTP--------------IGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVR 290
                                   F     + ++ T  +  F+     A +     H +R
Sbjct: 299 KAHQERQQEERQTAGTSWTDNGLVFTTPKGKPLDPTNLTRSFRRLLHGAELRTIRFHDLR 358

Query: 291 KFSATISADAGATAHELMATYGWKTVD-QAETYTKGADRIRLGIKNSRRISSVVD----S 345
             +AT+  + G     +    G   +   A  Y     R+RL  +    + S++     S
Sbjct: 359 HSTATLLLEQGVDLVVIKELLGHAHIGVTAGVYAHV--RLRLQRQAIETLGSILGPTDAS 416

Query: 346 DDP 348
           DDP
Sbjct: 417 DDP 419


>gi|254498877|ref|ZP_05111582.1| putative integrase/recombinase [Legionella drancourtii LLAP12]
 gi|254351862|gb|EET10692.1| putative integrase/recombinase [Legionella drancourtii LLAP12]
          Length = 418

 Score = 88.9 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 38/266 (14%), Positives = 86/266 (32%), Gaps = 27/266 (10%)

Query: 87  LAVNSRISFESYFDQIIRKSGDFD---YRKITTKHIRSGVESR-KHTPSSAIQFLTSMRV 142
           L+ N+     S     +   G  D   +R+I  K I   + S  +++  +     + +R+
Sbjct: 134 LSPNTASVSISQISLFLDFMGKRDIKTFRQIQPKDISDFICSLSRYSKKTISGIASYLRM 193

Query: 143 LFKWAVRQEYVAINPCLSVERP--KRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLAF 196
            FK+ + +  +  +   SV       + +    W +E + +           G +     
Sbjct: 194 YFKFLIYRGDLKNDLSQSVPSVSVPYQAKIPSVWDRELITKLLDTVDRSSPRGKRDYAML 253

Query: 197 EFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDG-------FMKLLAM 247
                 GLR  D     + ++     + SI   KT   + + L +        ++K    
Sbjct: 254 LLACRLGLRLGDIRELTLDNIDWEAEMISITQGKTKAPLCLPLTNEVGNALIDYIKFARP 313

Query: 248 TPIGKETFF-INNDKQKMNATQ-FSIWFKAKATKAGV------NKSAHGVRKFSATISAD 299
               ++ F  +       +    F    +     +G+      ++  H +R   AT   +
Sbjct: 314 ETNYRQVFLKLTQPFTPYSKNTHFYNIVRYWRDLSGIKFRSQQHQGLHSLRHSLATYLLE 373

Query: 300 AGATAHELMATYGWKTVDQAETYTKG 325
                  +    G  +++    Y K 
Sbjct: 374 DNIPFSLIADILGHASMNTTMIYAKA 399


>gi|224369728|ref|YP_002603892.1| XerC [Desulfobacterium autotrophicum HRM2]
 gi|223692445|gb|ACN15728.1| XerC [Desulfobacterium autotrophicum HRM2]
          Length = 409

 Score = 88.9 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 40/262 (15%), Positives = 76/262 (29%), Gaps = 25/262 (9%)

Query: 93  ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK-HTPSSAIQFLTSMRVLFKWAVRQE 151
              E + D +I  +G  D   I    +   + +   +T  +  Q L S+R   ++ + +E
Sbjct: 138 KQSERFMDYLI-SNGISDCHDIDMPAVNGYIRTLAGYTYKTVEQNLCSIRSFLRYLLEKE 196

Query: 152 YVAINPCLSVERP--KRKTEGIRPWTKEDMQ----QFKSFWSEGSQPRLAFEFLLYSGLR 205
            +  +          +++T     WTK+++            +G +           GLR
Sbjct: 197 ILKTDLASKTPMIQARKQTRIPSVWTKDELDTLIGAIVRGNPKGKRDYAIILLACVLGLR 256

Query: 206 CSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGF-----MKLLAMTPIGKETFFIN 258
            +D         H +         KT   +T+ LP          L    P         
Sbjct: 257 VTDIKNLTFDCFHWETKELIFTQSKTRETVTLPLPSEVGWAVIDYLKYSRPKVDSPIIFV 316

Query: 259 NDKQKMNATQ----FSIWFKAKATKAGVN-----KSAHGVRKFSATISADAGATAHELMA 309
                              +     A +      +  H +R  +A+   + G     +  
Sbjct: 317 RHLAPFLPFSEKDHLHQIIRDYMRIAHLPTLKKRRGMHSLRHTAASRMLEHGTPLVVISD 376

Query: 310 TYGWKTVDQAETYTKGADRIRL 331
             G    D    Y K  D  +L
Sbjct: 377 ILGHMDTDSTAVYLK-VDIKKL 397


>gi|163851291|ref|YP_001639334.1| integrase family protein [Methylobacterium extorquens PA1]
 gi|163662896|gb|ABY30263.1| integrase family protein [Methylobacterium extorquens PA1]
          Length = 429

 Score = 88.9 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 57/356 (16%), Positives = 109/356 (30%), Gaps = 49/356 (13%)

Query: 19  GKIIYY--FRKGHG--RRIRLPYPHESTFIPAYMSALTG-----STPKREYINSPRKKPT 69
           G+ +YY  +R   G  RR+ L    + T   A   A+T                 R+K  
Sbjct: 37  GRRVYYADYRTAAGMRRRMSLGEHGKLTVDEARRLAITTLGDVIRGDDPIEERVTRRKSL 96

Query: 70  TLKWLISEYRKSAHWGSLAVNSRI---------SFESYFDQIIRKSGDFDYRKITTKHIR 120
           T+  L   Y ++A  G +    R                  I+   G    R +TT  ++
Sbjct: 97  TIAELCRRYLEAAGAGLVLGRGRKPKKATTLVSDRGRIEHHIVPLLGSRLVRDLTTAEVQ 156

Query: 121 SGVESRKHTPSSAIQFLTS-------------------MRVLFKWAVRQEYVAINPCLSV 161
             V   +   ++      +                   +  +  +A+ +  +A+NP   V
Sbjct: 157 RFVRDVQAGRTAKRYKTKARGMVLVEGGAGAAARTAGLLGGIMSYAIGEGVIALNPVRGV 216

Query: 162 ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR------LAFEFLLYSGLRCSDSCRAGVQ 215
           +RP    +  R  + E+ +      +E    R       + + L  +G R  +       
Sbjct: 217 KRP-ADRKKDRRLSPEEYRALGRVLAEAEGDRESWQAVSSIQLLCLTGCRMREIANLRWT 275

Query: 216 HLQNNIFSIKTQKTGTIITV-ELPDGFMKLLAMT--PIGKETFFINNDKQKMNATQFSIW 272
            +      ++   T    ++  L    + LL                  +          
Sbjct: 276 EVDFAGRCLRLDNTKEGRSIRPLGQAAVALLRQIEERRAGPYVLPATRGEG-GFGGIPDA 334

Query: 273 FKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
            +  + +AG+    AH +R   A+ +AD G +   + A  G         Y    D
Sbjct: 335 IERYSKRAGLPGIGAHTLRHSFASTAADLGCSDSTIGAMLGHAGHGVTSRYIHHLD 390


>gi|120403496|ref|YP_953325.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
 gi|119956314|gb|ABM13319.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
          Length = 385

 Score = 88.9 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 58/360 (16%), Positives = 104/360 (28%), Gaps = 48/360 (13%)

Query: 19  GKIIYYFRKGHGRRIRLPYPH----ESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           G+    +     RR + P       ++    A   A   S        +P+   TT    
Sbjct: 24  GRYRAMYYGPDRRRYKAPTTFRAKADARGWLALRQAEIISKAWTPPEAAPKITRTTFADY 83

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRK-HTPSS 132
              + K      L  ++R  +E   ++ +I   G      IT   +R    +    TP+ 
Sbjct: 84  ARNWIKQ---RDLKQHTREHYEVLLERHLISPFGSLPLSSITVDDVRGWYATFATETPTL 140

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPC--LSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
                  +R +   A     ++ NPC        KR  + IRP T  ++++  +   E  
Sbjct: 141 RSHTYGLLRTILGTAASDGKISSNPCLIRGAGTTKRVKK-IRPATLPEIEKITTEMPE-- 197

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHL---------------------------QNNIFS 223
           Q +       +  LR  +      + +                            +    
Sbjct: 198 QYQAMILLAAWCALRFGELTELRRKDIVLTTTVDLEGETVHMGVIRVERAVVRVDDGYLV 257

Query: 224 IKTQKTGTIITVELPDGFMKLLA------MTPIGKETFFINNDKQKMNATQFSIWFKAKA 277
              +       V +P   + ++       +        F     + +        F    
Sbjct: 258 TTPKSDAGTRDVAIPPHLVPVIHDHLAVHVDGGPDALLFPAAHGRHLAPATLYRQFYKAR 317

Query: 278 TKAG-VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
             A   +   H +R   A ++A  GAT  ELMA  G  T   A  Y   A      I  +
Sbjct: 318 VAADRPDLRFHDLRHSGAVLAAATGATLAELMARLGHSTPQAAMRYQHAAQGRDQAIAAA 377


>gi|62362247|ref|YP_224172.1| gp34 [Enterobacteria phage ES18]
 gi|58339090|gb|AAW70505.1| gp34 [Enterobacteria phage ES18]
          Length = 387

 Score = 88.9 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 48/273 (17%), Positives = 99/273 (36%), Gaps = 29/273 (10%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQ 135
           + +      L   +     S   ++  +  + +++ +     + G +    K  P++   
Sbjct: 86  WLQHFAGIQLKDITETKIYSAIQKMTNRRHEENWKMMEEACRKKGKQPPVFKPKPAAIAT 145

Query: 136 ---FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
               L+ ++ L + A  +E+  ++    V+ P+ K + IR     + ++      E  + 
Sbjct: 146 KATHLSFIKALLRTA-EREWKMLDKAPIVKVPQPKNKRIRWLEPHEAKRLIDECPEPLKS 204

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGFMKLLAMT 248
               EF L +GLR S+      Q +           +  K+   I V L D   ++L   
Sbjct: 205 --VVEFALSTGLRRSNIINLEWQQIDMQRKVAWIHPEQSKSNHAIGVALNDTACRVLKKQ 262

Query: 249 PIGKETFFINNDK--------------QKMNATQFSIWFKAKATKAGV-NKSAHGVRKFS 293
            IG    ++   K              +KM     + W +A   +AG+ +   H +R   
Sbjct: 263 -IGNHHKWVFVYKESSTKPDGTKSPVVRKMRYDANTAW-RAALKRAGIEDFRFHDLRHTW 320

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           A+    AG     L    GW++++    Y   A
Sbjct: 321 ASWLVQAGVPISVLQEMGGWESIEMVRRYAHLA 353


>gi|191638064|ref|YP_001987230.1| Integrase [Lactobacillus casei BL23]
 gi|4586564|dbj|BAA76437.1| integrase [Lactobacillus phage phiFSW]
 gi|190712366|emb|CAQ66372.1| Integrase [Lactobacillus casei BL23]
 gi|327385292|gb|AEA56766.1| Integrase family protein [Lactobacillus casei BD-II]
          Length = 394

 Score = 88.9 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 45/283 (15%), Positives = 89/283 (31%), Gaps = 53/283 (18%)

Query: 95  FESYFD-QIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQ 150
           +       II K GD    K T K  +  + S      + ++      ++    K AV  
Sbjct: 93  YRYNLKKYIIPKIGDIRLAKYTLKEHQEFISSLFNDGLSLNTVKLINGTLHNALKKAVAI 152

Query: 151 EYVAINPCLSVE---RPKRKTEGIRPWTKEDMQQFKSFWSEGSQP--RLAFEFLLYSGLR 205
            Y+  NP + VE     K  ++ +  WTK+ +  F     E  +P     F  L+  GLR
Sbjct: 153 GYITKNPTVGVEFSAYAKDNSKKLHFWTKDQVGSFIEAAEEDKEPMWLSFFVTLIDCGLR 212

Query: 206 CSDSCRAGVQHLQ---------------------NNIFSIKTQKT---------GTIITV 235
             ++       +                          ++   KT            +  
Sbjct: 213 VGEAMALRWSDIDFSKNTLSVNATRIYRAETGSNAGKIALDRPKTLSSKRTEYMTARVND 272

Query: 236 ELPDGFMKLLAMTPIGKETFFINND-------------KQKMNATQFSIWFKAKATKAGV 282
            L   + +  +   +    F  +++              Q + +   +  F     +AG+
Sbjct: 273 LLQQQYERHFSHGNVQGFRFSTSHNNDFVFTYSSDAKFGQPLRSRATTGAFNRITNRAGL 332

Query: 283 NK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
                H +R   A +  +AG +  ++    G K +   + Y +
Sbjct: 333 PHIRIHDLRHTHAVLMREAGLSLDDIKDDLGHKDISTTQIYAE 375


>gi|296273270|ref|YP_003655901.1| integrase family protein [Arcobacter nitrofigilis DSM 7299]
 gi|296097444|gb|ADG93394.1| integrase family protein [Arcobacter nitrofigilis DSM 7299]
          Length = 351

 Score = 88.9 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/186 (17%), Positives = 66/186 (35%), Gaps = 20/186 (10%)

Query: 165 KRKTEGIRPWTKEDMQQFKSFWSE--------GSQPRLAFEFLLYSGLRCSDSCRAGVQH 216
           K  T+      KE++ +F     E        G++ RL  + +LY+G+R  ++    ++ 
Sbjct: 160 KSGTKLPSYMNKEEVNKFIKAIDEYPFKNPIIGTRNRLIIKIILYTGIRVGEAISIKIKD 219

Query: 217 L--QNNIFSIKTQKTGTIITV------ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ 268
           +    + + I+ +  G    +       + D     L      +   F N   +K+    
Sbjct: 220 INKDGDAYIIQVRGKGNKPRIVMIKEHIIKDDLSTWLENNCCEENLLFCNQKNKKLTQAY 279

Query: 269 FSIWFKAKATKAGVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
                +      G+ K     H +R   AT+          +  + G   ++ +  YT  
Sbjct: 280 IGRLVEQILISCGIRKEKNGPHMLRHSFATLLYQNSHDLILVQESLGHADINTSRIYTH- 338

Query: 326 ADRIRL 331
            D+ RL
Sbjct: 339 FDKNRL 344


>gi|158522916|ref|YP_001530786.1| integrase family protein [Desulfococcus oleovorans Hxd3]
 gi|158511742|gb|ABW68709.1| integrase family protein [Desulfococcus oleovorans Hxd3]
          Length = 357

 Score = 88.9 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 49/311 (15%), Positives = 98/311 (31%), Gaps = 27/311 (8%)

Query: 39  HESTFIPAYMSALTGSTPKREYINSPRKKPTT-----LKWLISEYRKSAHWGSLAVNSRI 93
           +   +      A      KR+ I +P+    T        L+++        +   +   
Sbjct: 22  YTEAWFKTKKEANQAEAEKRKEIKNPKPVLETPTDMAFLELVNQKLDHVKAYNSKSHYI- 80

Query: 94  SFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-KHTPSSAIQFLTSMRVLFKWAVRQEY 152
           S+     +     G     ++T   I+  +  R K +  +A Q L  +R +F + V Q+ 
Sbjct: 81  SYLYMARRWANLWGHLPCGELTGDMIQKHLYQRHKVSAYTANQDLRYLRAVFNFGVGQKM 140

Query: 153 VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRA 212
           +  +P   +     + +       ED+ +  +     +Q  L    +  +  R S+  R 
Sbjct: 141 IYTDPTAGIRFFPVEKKIKYVPCSEDIDKVIAAADPDTQDYLW--AIRETLGRVSEINRL 198

Query: 213 GVQHLQNN---IFSIKTQKTG---TIITVELPDGFMKLLAMTPIGKE--------TFFIN 258
             + +  +   I     +K G   T   V + +    +L      +           F N
Sbjct: 199 VWEDINLDERFIILYTRKKRGGHLTPRKVPMTEKLHDVLQNRFNRRSPDVPWVFWHRFWN 258

Query: 259 NDKQKMN---ATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWK 314
               + N         + K+   KAGV     H +R   A+I          +    G +
Sbjct: 259 KRNGEFNIGPYKDRKRFMKSLCEKAGVRYFRFHALRHSGASIMDGNDVPIAAIQRILGHE 318

Query: 315 TVDQAETYTKG 325
                E Y   
Sbjct: 319 NRKTTEIYLHS 329


>gi|238764997|ref|ZP_04625934.1| Integrase [Yersinia kristensenii ATCC 33638]
 gi|238696766|gb|EEP89546.1| Integrase [Yersinia kristensenii ATCC 33638]
          Length = 334

 Score = 88.9 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 43/247 (17%), Positives = 68/247 (27%), Gaps = 24/247 (9%)

Query: 93  ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR------------KHTPSSAIQFLTSM 140
            S       + R  GD      T K      E R              TP +    L  M
Sbjct: 80  KSRHQVLLNMCRDLGDPRAIDFTAKTFSQYREQRLNGKILRGTRTKGVTPRTLNIELAYM 139

Query: 141 RVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA--FE 197
           R +F    R  E+   NP   V + +   + +   TKE +          + P LA    
Sbjct: 140 RAMFNELSRLSEWRYDNPLRGVRQYRTHEQEMAFLTKEQIVNLLKECENSTVPELATVVR 199

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI 257
             L +G R S++       +     +    K     ++ + +     L   P      F 
Sbjct: 200 LCLATGARWSEAESLTHTQVMPYKVTYTKTKGKRNRSIPISEELFNSL---PKKTGRLF- 255

Query: 258 NNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVD 317
                    + F    K    K    + +H +R   A+     G     L    G   + 
Sbjct: 256 -----PSCYSAFRTALKRTNIKLPDRQCSHVLRHTFASHFMMKGGNILVLQRILGHTDIK 310

Query: 318 QAETYTK 324
               Y  
Sbjct: 311 MTMRYAH 317


>gi|240146617|ref|ZP_04745218.1| phage integrase [Roseburia intestinalis L1-82]
 gi|257201240|gb|EEU99524.1| phage integrase [Roseburia intestinalis L1-82]
          Length = 398

 Score = 88.9 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 51/297 (17%), Positives = 96/297 (32%), Gaps = 56/297 (18%)

Query: 86  SLAVNSRISFE-SYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HTPSSAIQFLTSMRV 142
            LA N+  ++   Y   I    G      +   H ++ +   +  +  S+  Q   SM  
Sbjct: 82  DLAPNTIRNYRERYEKNIQPLIGTMCIADVKPMHCKAVLNRMETEYAGSTIRQTYISMGT 141

Query: 143 LFKWAVRQEYVAINPCLSVE--RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200
           +FK AV  + +A +P   V   +P R  + I+  T E+ ++F    +E S     +  LL
Sbjct: 142 MFKSAVMNDIIAKHPMNGVRYTKPVRAVDDIKYLTVEEQEKFLE-AAERSHNYRQYALLL 200

Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQK------------------TGTIITVELPDGFM 242
            +GLR ++        +     ++   K                    +  T+ L +   
Sbjct: 201 ETGLRTAELIGLTWDAIDWKKRTLTVNKSLEYRHSRRYWRAGPPKTKKSYRTIPLTERAY 260

Query: 243 KLLAMTPIGKET-----------------------------FFIN-NDKQKMNATQFSIW 272
            +L      K+T                              FIN    +    + +   
Sbjct: 261 TILKSCYDEKDTRKESEMLSQILEYTDSRTGEKKCLVMRDLVFINWRTGEPAKNSSYDTH 320

Query: 273 FKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGAD 327
                 +AG+ +   H +R   AT + + G     L    G  ++    + Y    D
Sbjct: 321 LYKLCDEAGIKRFCMHALRHTYATRAIERGVQPKVLQQLLGHASIKTTMDRYVHVTD 377


>gi|239907685|ref|YP_002954426.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
 gi|239797551|dbj|BAH76540.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
          Length = 348

 Score = 88.9 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 55/354 (15%), Positives = 113/354 (31%), Gaps = 32/354 (9%)

Query: 12  TKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT- 70
              R  +G     +R   G++    +        A   A       +++   P   P   
Sbjct: 3   VHMRKNNGTYYVAYRNAEGKQTTKTFGKGREGRRA---AQKFDKQVKDHGPVPPSTPEAI 59

Query: 71  -----------LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKH 118
                      L  L   Y  +       V +     S+    +I         +I    
Sbjct: 60  SEVVAVADKIYLDQLAQMYINTRKVEGTTVKTLNEIRSFLKKHLIPVFAQRPIDEIRYDE 119

Query: 119 IRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
           I + V      H+P +  ++L+ ++ +F++ V+Q+ +  NP    ++ K      +  T 
Sbjct: 120 ILTIVGKAYADHSPVTRGRYLSYLKTVFQFGVKQDLIEKNPLRHWKKAKEHPRDTK-LTV 178

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD--SCRAGVQHLQNNIFSIKT--QKTGTI 232
            D+ + K+  +       A E     G+R  +          +     ++K    KT + 
Sbjct: 179 ADLMKIKAVAAPHLA--WAIEIAWNLGVRTGESELFALKWADVDWAQSTVKVFATKTKSA 236

Query: 233 ITVELPDGFMKLLAMTPIGKET-FFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289
             + +   FM  L       +T + I    +     QF + F++   +A +      + +
Sbjct: 237 RVIPISPEFMARLKEMQGRAKTEYLIEYAGRP--VKQFRMSFRSACKRAEIPYHVVLYDI 294

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQA--ETYTKGADRIRLGIKNSRRISS 341
           R   AT     G     +    G  +V     + Y    D  R  I     +++
Sbjct: 295 RHLLATTLLQEGGDLSAVSKLMGHSSVHMTANQYYHLLGDEKRRTIAKLPSLNA 348


>gi|171317907|ref|ZP_02907083.1| integrase family protein [Burkholderia ambifaria MEX-5]
 gi|171096914|gb|EDT41786.1| integrase family protein [Burkholderia ambifaria MEX-5]
          Length = 283

 Score = 88.9 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 49/280 (17%), Positives = 90/280 (32%), Gaps = 34/280 (12%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFES---YFDQIIRKSGDFDYRKITTKHIRSGVESR 126
           T + +I  Y  S         +  S +       ++     D D   +    +R  +  R
Sbjct: 2   TFEEVIDVYLAS--------KTNRSRQRDLYALKRLRPYFSDRDLCVLKRADVRRYIAVR 53

Query: 127 KHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP-W-TKEDMQQ 181
           +      S+  + L        + VR EY   +    V R    +   R  W +++D   
Sbjct: 54  QADGVQESTIQRELRVFSAAINF-VRLEYDRPDLPNPVIRLAMSSGAARVRWISRQDADA 112

Query: 182 FKSFWSE-GSQPRLA--FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ----KTGTIIT 234
                S    +P L       L++G R ++  +     +  +   +  +    K G    
Sbjct: 113 LVICASRFARRPHLPNFIRLALHTGCRKNELLKLEWSRVDFDRAVLSLEPSDTKNGKRRV 172

Query: 235 VELPDGFMKLLA-------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SA 286
           V L D  M  L        +T       F      +M        F+A   +AG++    
Sbjct: 173 VPLNDEAMAALRHQRDWVRVTVPRSPWVFAVASGDRMT--TIQKGFRAACLRAGIDDFRV 230

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           H +R   A+    AG + + +    G  ++   E Y   A
Sbjct: 231 HDLRHTFASWLVMAGVSLYVVKDLLGHSSITVTERYAHLA 270


>gi|187921898|ref|YP_001893487.1| integrase family protein [Burkholderia phytofirmans PsJN]
 gi|187720336|gb|ACD21558.1| integrase family protein [Burkholderia phytofirmans PsJN]
          Length = 380

 Score = 88.9 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 39/236 (16%), Positives = 76/236 (32%), Gaps = 22/236 (9%)

Query: 106 SGDFDYRKITTKHIRSGVESRKHT----------PSSAIQFLTSMRVLFKWA-VRQEYVA 154
            G     + TT  I +  + R  T          P++    L  +  LF  A +      
Sbjct: 46  LGKVPISQATTVDIANYRDIRLATISRTTNRPVSPNTVRLELALLSDLFNIARIEWGVAV 105

Query: 155 INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP--RLAFEFLLYSGLRCSDSCRA 212
            NP + V +PK      R  T  + ++     S+             + + +R  +    
Sbjct: 106 DNPVMRVRKPKIPPGRERRLTWGEERRILRGASQHRNEQFYSVVVLAIETAMRQGEILGL 165

Query: 213 GVQHLQNN--IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS 270
             +++     I  +   K GT   V L    +  L    +  E    N       +  F 
Sbjct: 166 TWENIDLRVRIAHLPATKNGTKRDVPLSLRAVDALTRLGVKTEGPVFN-----YTSAGFK 220

Query: 271 IWFKAKATKAGV-NKSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTK 324
             ++    + G+ +   H +R  + +   + G     E+    G K++   + YT 
Sbjct: 221 SAWRTLLQRIGMMDLHFHDLRHEAISRLFELGTLDMMEVATISGHKSMQMLKRYTH 276


>gi|218129570|ref|ZP_03458374.1| hypothetical protein BACEGG_01147 [Bacteroides eggerthii DSM 20697]
 gi|217988300|gb|EEC54623.1| hypothetical protein BACEGG_01147 [Bacteroides eggerthii DSM 20697]
          Length = 416

 Score = 88.9 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 42/257 (16%), Positives = 82/257 (31%), Gaps = 27/257 (10%)

Query: 93  ISFESYFDQIIRKSG--DFDYRKITTK---HIRSGVESRKH-TPSSAIQFLTSMRVLFKW 146
             ++ Y    +   G  D ++  IT +     ++ ++  K+  PS   + L  +  L   
Sbjct: 132 KYYQKYLKDYLTSLGKEDIEFSDITEEFGSSYKAFLKRYKNFGPSQMNKCLCWLSKLVYL 191

Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS---FWSEGSQPRLAFEFLLYSG 203
           AV  E +  NP   +E  K+     R  ++ +++               R AF F +++G
Sbjct: 192 AVDYEILRANPLEDMEYEKKPAPKHRHISRAELKAILETPMLDPLQELGRRAFLFSIFTG 251

Query: 204 LRCSDSCRAGVQHLQ-----NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFIN 258
           L   D       H+           I  +KT     + L     ++L       + +   
Sbjct: 252 LAYVDIMLLHPHHIGTTADGRRYIRINRKKTNVEAFIPLHPIAEQIL-------DLYNTT 304

Query: 259 NDKQK----MNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYG 312
           +D +      +  +            G   N S H  R    T     G     +    G
Sbjct: 305 DDTKPVFPLPSRDEMWFEIHELGVAIGRKENLSYHQSRHSFGTFLISEGIPIESIARMMG 364

Query: 313 WKTVDQAETYTKGADRI 329
              +   + Y +  D+ 
Sbjct: 365 HSGIKTTQRYAEITDKK 381


>gi|168789050|ref|ZP_02814057.1| integrase [Escherichia coli O157:H7 str. EC869]
 gi|261225024|ref|ZP_05939305.1| integrase [Escherichia coli O157:H7 str. FRIK2000]
 gi|261257629|ref|ZP_05950162.1| integrase [Escherichia coli O157:H7 str. FRIK966]
 gi|331678036|ref|ZP_08378711.1| integrase [Escherichia coli H591]
 gi|189371222|gb|EDU89638.1| integrase [Escherichia coli O157:H7 str. EC869]
 gi|320172729|gb|EFW47964.1| Integrase [Shigella dysenteriae CDC 74-1112]
 gi|323944901|gb|EGB40966.1| phage integrase [Escherichia coli H120]
 gi|324118070|gb|EGC11969.1| phage integrase [Escherichia coli E1167]
 gi|331074496|gb|EGI45816.1| integrase [Escherichia coli H591]
          Length = 337

 Score = 88.9 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 42/207 (20%), Positives = 77/207 (37%), Gaps = 10/207 (4%)

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYV-AINPCLSVERPKRKTEGIRPWTKEDM 179
           +   S+   PSS  + LT +  +F   +  E     +P    +R K +       T+E++
Sbjct: 111 ATRRSQGIKPSSINRDLTCISGMFTALIEAELFFGEHPIRGTKRLKEEKPETGYLTQEEI 170

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239
               +    G   ++A    L +G R  ++ R   +++ +N  +    KT    TV + +
Sbjct: 171 ALLLAALD-GDNKKIAI-LCLSTGARWGEAARLKAENIIHNRVTFVKTKTNKPRTVPISE 228

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISAD 299
              K++A    G    F + D  +   T      KA        ++ H +R   AT    
Sbjct: 229 AVAKMIADNKRG--FLFPDADYPRFRRT-----MKAIKPDLPTGQATHALRHSFATHFMI 281

Query: 300 AGATAHELMATYGWKTVDQAETYTKGA 326
            G +   L    G   ++Q   Y   A
Sbjct: 282 NGGSIITLQRILGHTRIEQTMVYAHFA 308


>gi|160939517|ref|ZP_02086867.1| hypothetical protein CLOBOL_04410 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437727|gb|EDP15489.1| hypothetical protein CLOBOL_04410 [Clostridium bolteae ATCC
           BAA-613]
          Length = 462

 Score = 88.9 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 64/354 (18%), Positives = 103/354 (29%), Gaps = 84/354 (23%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSG------ 122
           TL  L+ EY       + A+++  S      + I    GD     IT + +         
Sbjct: 62  TLNDLLDEYMSIYGVNTWAMSTYESRRGLARNYITPIIGDMLLSDITPRMMDKYYRDLLS 121

Query: 123 -----VESRKHT-----PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
                V +RK T     P +  +    +R  F  AVR E ++ NP L+   PK + +   
Sbjct: 122 VKTVSVNNRKPTSEYLTPHTVREIHKLLRSAFNQAVRWELISRNPVLNATLPKEEHKERD 181

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--------------- 217
            WT E + +      +     LA        LR  +        +               
Sbjct: 182 IWTAETLSKAMEVCDDPILS-LALNLAFSCSLRIGEMLGLTWDCIDIAPQSIENGSAYIF 240

Query: 218 -----------------QNNIFS--------------IKTQKTGTIIT-VELP------- 238
                               +                +K  KT T I  V LP       
Sbjct: 241 VNKELQRVTRGALDDLSDKGVIKKFPPCIASTHTALVLKEPKTKTSIRRVYLPKTVAYML 300

Query: 239 -------DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVR 290
                  D  M L     I     F +++ + M +   +  F     + G+     H +R
Sbjct: 301 VERKKEIDELMDLFGDEYIDNNLVFCSSNGRPMESQVINRAFNKLIKENGLPHVVFHSLR 360

Query: 291 KFSATI-SADAGATAHELMATYGWKTVDQ-AETYTKGADRIRLGIKNSRRISSV 342
             S T      G     +    G   V   A+ Y+   D  R    N++R+   
Sbjct: 361 HSSITYKLKLNGGDMKSVQGDSGHAQVKMVADVYSHIIDEDR--CINAQRLEEA 412


>gi|57234825|ref|YP_181071.1| phage integrase family site specific recombinase [Dehalococcoides
           ethenogenes 195]
 gi|57225273|gb|AAW40330.1| site-specific recombinase, phage integrase family [Dehalococcoides
           ethenogenes 195]
          Length = 336

 Score = 88.9 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 38/247 (15%), Positives = 77/247 (31%), Gaps = 31/247 (12%)

Query: 89  VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAV 148
            N  + +++  D+     G     +            R    ++  ++   +R    W  
Sbjct: 33  PNQYLQYKALLDKFQAFLGGMPPSQALALKFLGLYHHRAQ--ATIFRYTGIIRGFMDW-Y 89

Query: 149 RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF--WSEGSQPRLAFEFLL-----Y 201
            +        + V++PK   E + P    D+++           +  +A + +L      
Sbjct: 90  GEGL-----DVKVKKPKHLPEYVEP---ADIEKLVDAITCKHNHKDTIARDEMLIRFAQM 141

Query: 202 SGLRCSDSCRAGVQHLQNN--IFSIKTQKTGTIITVELP----DGFMKLLAMTPIGKETF 255
           +GLR S+     V  +Q       ++  K      V +P          LA        F
Sbjct: 142 TGLRRSELANLKVSDIQLEKRTVFVRQGKGMKDRAVPIPLGLISKLTSFLAHKQPSDSLF 201

Query: 256 FINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKT 315
            + +          +      + KAGV    H +R   A    + GA    + A  G ++
Sbjct: 202 NLTSR-------SITDKLSTWSKKAGVKIHPHQLRHSYAEQLLEKGAALTSVQALLGHES 254

Query: 316 VDQAETY 322
           +     Y
Sbjct: 255 LQTTSVY 261


>gi|49486813|ref|YP_044034.1| integrase [Staphylococcus aureus subsp. aureus MSSA476]
 gi|49245256|emb|CAG43729.1| integrase [Staphylococcus aureus subsp. aureus MSSA476]
 gi|319894719|gb|ADV76530.1| integrase [Staphylococcus phage TEM126]
          Length = 345

 Score = 88.9 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 50/325 (15%), Positives = 110/325 (33%), Gaps = 26/325 (8%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT--TLKWLIS 76
           GK   Y  K  G+R R               A +    K   + S        TL+    
Sbjct: 8   GKKWQYEFKHEGKRYRKKGFRTK------REANSAGLDKLNELRSGFNIDNYITLEEYFE 61

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRSGVE--SRKHTPSSA 133
            + K+     +  N+   + +    I + K G  +  KI  +  +  +   S++H   + 
Sbjct: 62  NWIKTYKQPVVKENTYRHYRNALQHIQKHKIGKMELSKINRQVYQKFINDYSKEHAKETI 121

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSV-----ERPKRKTEGIRPWTKEDMQQFKSFWSE 188
            +   ++R     A+   ++  NP   V     +  K + E     T+ ++ +      +
Sbjct: 122 RKTNGAIRSALDDALYDGFIFKNPAYKVNYKAGKPTKSEQEKFISVTEYEILK-DHVRKK 180

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTG-TIITVELPDG----F 241
            ++  LA   ++ +G R S +     +H+    N   I  +KT  +   + +        
Sbjct: 181 RTRSSLALFIMICTGCRVSGARNIKTEHINQVKNTIFIDERKTDTSPRYISIAKSDMKHI 240

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADA 300
           M +++   I  + +        +N    +   K+      +   ++H +R    +     
Sbjct: 241 MDVISTFAISYDGYIFKEAGSIINLQAINNALKSACRVNNIPIITSHALRHTHCSYLLAK 300

Query: 301 GATAHELMATYGWKTVD-QAETYTK 324
           G + H +    G K +      Y+ 
Sbjct: 301 GVSIHYISKRLGHKNIAITTSVYSH 325


>gi|300901301|ref|ZP_07119398.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 198-1]
 gi|300355266|gb|EFJ71136.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 198-1]
          Length = 337

 Score = 88.9 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 42/207 (20%), Positives = 77/207 (37%), Gaps = 10/207 (4%)

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYV-AINPCLSVERPKRKTEGIRPWTKEDM 179
           +   S+   PSS  + LT +  +F   +  E     +P    +R K +       T+E++
Sbjct: 111 ATRRSQGIKPSSINRDLTCISGMFTALIEAELFFGEHPIRGTKRLKEEKPETGYLTQEEI 170

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239
               +    G   ++A    L +G R  ++ R   +++ +N  +    KT    TV + +
Sbjct: 171 ALLLAALD-GDNKKIAI-LCLSTGARWGEAARLKAENIIHNRVTFVKTKTNKPRTVPISE 228

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISAD 299
              K++A    G    F + D  +   T      KA        ++ H +R   AT    
Sbjct: 229 AVAKMIADNKRG--FLFPDADYPRFRRT-----MKAIKPDLPTGQATHALRHSFATHFMI 281

Query: 300 AGATAHELMATYGWKTVDQAETYTKGA 326
            G +   L    G   ++Q   Y   A
Sbjct: 282 NGGSIITLQRILGHTRIEQTMVYAHFA 308


>gi|262403450|ref|ZP_06080008.1| integron integrase IntI4 [Vibrio sp. RC586]
 gi|262349954|gb|EEY99089.1| integron integrase IntI4 [Vibrio sp. RC586]
          Length = 320

 Score = 88.9 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 43/294 (14%), Positives = 87/294 (29%), Gaps = 57/294 (19%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWA 147
           A  +  ++  +  + I          +  K +   +         A +  +       + 
Sbjct: 19  AKKTIEAYLHWITRYIHFHNKKHPSLMGDKEVEEFLTDLAVQGKVATKTQSLALNSLSFL 78

Query: 148 VRQEYVAINP-CLSVE--RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGL 204
            ++  +   P  L +   R + + +     T+++++          + +L  + L  SGL
Sbjct: 79  YKE--ILKTPLSLEIRFQRSQLERKLPVVLTRDEIRCLLDVVDP--KYQLPAKLLYGSGL 134

Query: 205 RCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLAMTPIGKETFFINN--- 259
           R  +  R  VQ +  +  +I+    K G   TV L       L       + ++  +   
Sbjct: 135 RLMECIRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHLKEQIALAKRYYDRDLHQ 194

Query: 260 -------------------------------------------DKQKMNATQFSIWFKAK 276
                                                       +  MN T      +  
Sbjct: 195 KNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVMRRHHMNETVLQKTVRRS 254

Query: 277 ATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           A +AG+ K+   H +R   AT   + GA    +    G   V   + YT   DR
Sbjct: 255 AQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHVLDR 308


>gi|29377035|ref|NP_816189.1| phage integrase family site specific recombinase [Enterococcus
           faecalis V583]
 gi|29344501|gb|AAO82259.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis V583]
          Length = 379

 Score = 88.9 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 41/294 (13%), Positives = 95/294 (32%), Gaps = 45/294 (15%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVE---- 124
           TLK +   Y +     +L  + + + E  F + I     +   + I  + I    +    
Sbjct: 60  TLKDIYEVYEEKYT-QNLKPSYKQTQERIFKNYIEPYFKNTQIKLIKKQQIYDFQQFLLT 118

Query: 125 ---SRKHTPSS--AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
               RK T S+      +  ++ LF  A+++     NPC  +++ K + + I  WT ++ 
Sbjct: 119 SKPKRKETLSNKTINMIIIHLQKLFNVAMKEGLSYENPCNQIDKLKVQKKEIDFWTLDEF 178

Query: 180 QQFKSFWSEGSQ-PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT---- 234
             F S   +     ++ ++F  ++G+R  +        +     +++  K+  +I     
Sbjct: 179 TTFISHIDKNKPFLKVFYQFAFFTGMRAGEMIALTWSDIDFYNQTVRINKSAKLINGNYV 238

Query: 235 ----------------VELPDGFMKLLAMTP---------IGKETFFINNDK-QKMNATQ 268
                            ++     K   + P         I  +   +     +  ++  
Sbjct: 239 TTTPKTESSNRYITINSKITAMLKKWQEIQPKLLIDNFQNIDSDKLLVFQYSEKHPSSDY 298

Query: 269 FSIWFKAKATKAGVNKSA---HGVRKFSATISADAGATAHELMATYGWKTVDQA 319
           +S   K    K  +N      H  R     +          +    G  ++   
Sbjct: 299 YSKQIKKIIVKNNLNLKPIRLHDFRHSHVALLIHNNEKNTTIKERLGHSSITTT 352


>gi|314938444|ref|ZP_07845733.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133a04]
 gi|314942723|ref|ZP_07849548.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133C]
 gi|314952531|ref|ZP_07855530.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133A]
 gi|314994043|ref|ZP_07859368.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133B]
 gi|314997944|ref|ZP_07862841.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133a01]
 gi|313588052|gb|EFR66897.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133a01]
 gi|313591527|gb|EFR70372.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133B]
 gi|313595365|gb|EFR74210.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133A]
 gi|313598534|gb|EFR77379.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133C]
 gi|313642211|gb|EFS06791.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133a04]
          Length = 443

 Score = 88.9 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 48/312 (15%), Positives = 109/312 (34%), Gaps = 40/312 (12%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDF 109
           L     ++    S  +K    +++   + ++    ++  ++  S +  FD  I++  GD 
Sbjct: 100 LEADIQEKGLQASTAQKSKKFEYVYGLWFENYK-KTVKESTWSSTKQIFDTHILKVFGDK 158

Query: 110 DYRKITTKHIRSGVESRKHT-PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK--- 165
              KI     +  V +   + P    +       +F +A   + +  NP   V  P+   
Sbjct: 159 FIDKIDVFFCQEAVNTWSDSHPKIFKKIKNYTSNVFDYAASLQIITSNPMKLVSIPRGEA 218

Query: 166 --RKTEGIRPWTKEDMQQFKSFWSEGSQPR-LAFEFLLYSGLRCSDSCRAGVQHLQ---- 218
              + + I  +TKE++ +F          R L F  L ++G+R  ++       +     
Sbjct: 219 LDIEDKNIEFYTKEELIEFLEAIRNDDDERYLFFSLLAFTGIRKGEAFALTWSDIDFKSK 278

Query: 219 ------------NNIFSIKTQKTGT-IITVELPDGFMKLLA--------MTPIGKETFFI 257
                            + T K+ +    + L +  + LL         +  I  E    
Sbjct: 279 TLNINKTVTRGYQGRLIVNTPKSKSGKRKIYLDNDLISLLRKYYTKNKTIVTIQSENLIF 338

Query: 258 NNDK----QKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGW 313
           ++D       ++ +  ++ +K          + HG R   A++  ++GA+  ++    G 
Sbjct: 339 HHDGLLYNPTVSRSWLNVIYKHHPELTK-RITTHGFRHTHASLLFESGASLKDVQERLGH 397

Query: 314 KTVDQAE-TYTK 324
             +      YT 
Sbjct: 398 ADIQTTSNIYTH 409


>gi|302867667|ref|YP_003836304.1| integrase family protein [Micromonospora aurantiaca ATCC 27029]
 gi|302570526|gb|ADL46728.1| integrase family protein [Micromonospora aurantiaca ATCC 27029]
          Length = 353

 Score = 88.9 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 56/335 (16%), Positives = 113/335 (33%), Gaps = 44/335 (13%)

Query: 48  MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD---QIIR 104
           M  LTG+           K   T+  LI E+  +      + ++  ++        +++ 
Sbjct: 10  MRLLTGTRESCIISLMHDKPDGTVGALIEEFLTARATRKPSPHTLAAYRRDLTTVAELVA 69

Query: 105 KSGDFDYRKITTKHI-------RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINP 157
            +GD    ++    +            +     +S  +  ++    F + V +  V  NP
Sbjct: 70  AAGDASPLRLPVSTLSPKVMRAAFARFAAPRAAASVHRAWSTWNSFFTFLVAEGVVPGNP 129

Query: 158 CLSVERPKRKTEGIRPW----TKEDMQQF------KSFWSEGSQPRLAFEFLLYSGLRCS 207
             +V RP+      +P     T E++         +       +        L +GLR S
Sbjct: 130 MPAVGRPRTPLPRPKPLRGEDTPEELLAAVARAEGRQRDPWPERDLAVLALALCAGLRLS 189

Query: 208 DSCRAGVQHLQNNIFSIKT---QKTGTIITVELPDGFMKLLA------------MTPIGK 252
           +     V  +       +     K G   TV + DG  ++LA             +    
Sbjct: 190 ELLALRVSSVAGRDGERRVDVAGKGGRPRTVPIEDGVDRVLAGYLDSRRLRFGSRSVRPD 249

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVN------KSAHGVRKFSATISADAGATAHE 306
             F ++   + +         ++   ++G+          H +R   AT  A+ GA+A E
Sbjct: 250 APFLVDRQGEALRRGGLQYLVESCYRRSGIGDRVPRGARLHALRHTFATRLAEDGASAAE 309

Query: 307 LMATYGWKTVDQAETY---TKGADRIRLGIKNSRR 338
           +M   G  ++  ++TY   T G  R  +    + R
Sbjct: 310 IMRLLGHASLASSQTYIEVTAGQQRAAVAANRTNR 344


>gi|126661051|ref|ZP_01732135.1| phage integrase [Cyanothece sp. CCY0110]
 gi|126617662|gb|EAZ88447.1| phage integrase [Cyanothece sp. CCY0110]
          Length = 401

 Score = 88.9 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 48/339 (14%), Positives = 98/339 (28%), Gaps = 81/339 (23%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKIT------TKHIRSGVESRKHTPSSAIQFLTSMR 141
           A +++ ++  +  Q +    +     +        +  R  V+ +++  ++    L  +R
Sbjct: 38  ADDTQRTYLCHLKQFVHWCQNQTLNPVEATFANLKRFRRWLVKEQQYQTATISLKLAVLR 97

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRP---WTKEDMQQFKSFWS-----EGSQPR 193
             +   +  EY++ NP L +  P    +          E+M +              + R
Sbjct: 98  RFYDALLENEYISFNPALRLRPPTEVRDPAATINFLENEEMNRLLDSLPTENTVHALRDR 157

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKLLAM---- 247
           L    ++  G R  D  R  ++++        ++         V L     KLL      
Sbjct: 158 LLISLMVLQGCRTVDLHRVTMENMVKNGKNIGLRVSSKRHTRVVPLTPDLAKLLRRYLRA 217

Query: 248 ------TPIGKETFFINNDK------QKMNATQFSIWFKAKATKAGV------------- 282
                 T   +   FI+  +      + ++   F           G+             
Sbjct: 218 RRKAGETITDETPLFISVARNNEEQDKPLSRRSFRRIVDKYLGVIGLKELPCPKTLKKLT 277

Query: 283 -----------------------NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
                                    SAH +R  +AT++  AGAT  ++    G       
Sbjct: 278 GSQEKSNLPTKAREFSQHKPKPRKLSAHSLRHTAATLALRAGATLEQVQDLLGHTDPKTT 337

Query: 320 ETYTKGADRI-------------RLGIKNSRRISSVVDS 345
             Y    DR              +L     RR+  +  S
Sbjct: 338 MIYAHIGDRWLHNPALLLSVNKPKLEENLIRRLQRLQQS 376


>gi|87309792|ref|ZP_01091926.1| phage-related integrase [Blastopirellula marina DSM 3645]
 gi|87287556|gb|EAQ79456.1| phage-related integrase [Blastopirellula marina DSM 3645]
          Length = 292

 Score = 88.9 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 38/250 (15%), Positives = 76/250 (30%), Gaps = 11/250 (4%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGD-FDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL 143
            +    +    + Y    I   G      ++   H+    E      ++    +  ++ +
Sbjct: 27  ANRKPATYRLHKRYLKSFIDSVGRRMRPSQLRVHHVSKWHEGLAVGTTTQNDVVGIVQRM 86

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203
             WAV QEY+  NP +   +  ++      +T E  +  +          L F  L  +G
Sbjct: 87  LNWAVEQEYLYRNP-IKRMKKPKRKRRDVFYTPEQWKLIRENVPGPLGELLDF--LYLTG 143

Query: 204 LRCSDSCRAGVQHLQNNIFSIKTQKTG---TIITVELPDGFMKLLAMTPIGKET--FFIN 258
            R  ++     +HL +++    T ++        + L      +L      + +   F N
Sbjct: 144 CRPLEARTIEARHLHDDLVIFPTDESKGEHEARVIYLVPEAKAILRRLAKDRPSGILFRN 203

Query: 259 NDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISA-DAGATAHELMATYGWKTVD 317
                             +   G    A+G R   AT +    G     +    G K   
Sbjct: 204 TRGLPWTKNAIICQLTRVSKTVGFRVIAYGARHSFATEALTKGGVDPISVAHLMGHKDPT 263

Query: 318 QAET-YTKGA 326
                Y+  A
Sbjct: 264 MVSRVYSHIA 273


>gi|315607168|ref|ZP_07882172.1| integrase [Prevotella buccae ATCC 33574]
 gi|315251222|gb|EFU31207.1| integrase [Prevotella buccae ATCC 33574]
          Length = 448

 Score = 88.9 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 50/286 (17%), Positives = 95/286 (33%), Gaps = 27/286 (9%)

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLT 138
           R    + +L  + R   E   ++ ++        +   +  R  ++ R    S+    L 
Sbjct: 131 RAEGTYLNLFYSDRNLREFVENKGVQDISIGTITEDLFEEYRFFLKKRGLKASTINSNLC 190

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WSEGSQPRLA 195
            +  L   AV +  +  NP  + +  K + + IR   K D+ +  +      E    RL 
Sbjct: 191 WLSRLMFRAVSKRIIRCNPFENTKYEKEEKK-IRFLQKSDVMKLMAMKMNDKEAELARLM 249

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQ---NNIFSIK--TQKTGTIITVELPDGFMKLL----A 246
           F F  ++GL  SD      +H+Q   +    I+   QKT     V L      ++     
Sbjct: 250 FVFSCFTGLAISDMENLENKHIQTTADEQMYIRKERQKTKVEFIVPLHPIAEAIISHCQK 309

Query: 247 MTPIGKETFFINNDKQKM------NATQFSIWFKAKATKAGV--NKSAHGVRKFSATISA 298
                +E   +      +      + +             G+    S H  R    T+S 
Sbjct: 310 EQERSEEYLLVKEKGDHLVFHRDCSRSVMDAKLSIVGKACGICQRLSFHMARHTFGTMSL 369

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRI------RLGIKNSRR 338
            AG     +    G  ++   + Y +  D+       RL  K+  +
Sbjct: 370 SAGIPIESIAKMMGHASISSTQVYAQVTDKKISEDMDRLIAKHQEK 415


>gi|219853755|ref|YP_002470877.1| hypothetical protein CKR_0412 [Clostridium kluyveri NBRC 12016]
 gi|219567479|dbj|BAH05463.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 323

 Score = 88.9 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 40/271 (14%), Positives = 90/271 (33%), Gaps = 22/271 (8%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD------FDYRKITTKHIRSGV 123
           T +    EY   +    L+ ++  ++  +        G        D + I +      +
Sbjct: 24  TYQEAFKEYIAISKVRGLSEDTIKTYYYHNKYFCEFLGKNKNCGGLDVKTIES--YVLFL 81

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF- 182
           + +    ++   +L ++  + K+ +++ Y+      ++   K + E    +T++++    
Sbjct: 82  QEKGMKGTTINSYLQNISPVLKYCMKKGYIFE--YFNIPYVKVQQEHKEIFTEDELNTLL 139

Query: 183 ---KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVEL 237
              KS      +       L  +GLR S+     V +L   + I +    K      + +
Sbjct: 140 QPPKSKDFVSIRVYTCVWLLASTGLRASELRHLKVNNLNMIDRIITCNYTKNKKARYLPI 199

Query: 238 PDGFMKLLA-----MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS-AHGVRK 291
                ++L          G++  F       ++ T           + G+ KS  H  R 
Sbjct: 200 SSSLYEVLDNYLNLRKGDGEDYLFPTVYGDILSRTSLQKGIVKYCHQRGIKKSGIHIYRH 259

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETY 322
              T S +   +   L    G  T  Q   Y
Sbjct: 260 TFITRSVEKNVSPLILKNITGHATFKQLNNY 290


>gi|153953104|ref|YP_001393869.1| recombinase [Clostridium kluyveri DSM 555]
 gi|146345985|gb|EDK32521.1| Predicted recombinase [Clostridium kluyveri DSM 555]
          Length = 321

 Score = 88.9 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 40/271 (14%), Positives = 90/271 (33%), Gaps = 22/271 (8%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD------FDYRKITTKHIRSGV 123
           T +    EY   +    L+ ++  ++  +        G        D + I +      +
Sbjct: 22  TYQEAFKEYIAISKVRGLSEDTIKTYYYHNKYFCEFLGKNKNCGGLDVKTIES--YVLFL 79

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF- 182
           + +    ++   +L ++  + K+ +++ Y+      ++   K + E    +T++++    
Sbjct: 80  QEKGMKGTTINSYLQNISPVLKYCMKKGYIFE--YFNIPYVKVQQEHKEIFTEDELNTLL 137

Query: 183 ---KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVEL 237
              KS      +       L  +GLR S+     V +L   + I +    K      + +
Sbjct: 138 QPPKSKDFVSIRVYTCVWLLASTGLRASELRHLKVNNLNMIDRIITCNYTKNKKARYLPI 197

Query: 238 PDGFMKLLA-----MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS-AHGVRK 291
                ++L          G++  F       ++ T           + G+ KS  H  R 
Sbjct: 198 SSSLYEVLDNYLNLRKGDGEDYLFPTVYGDILSRTSLQKGIVKYCHQRGIKKSGIHIYRH 257

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETY 322
              T S +   +   L    G  T  Q   Y
Sbjct: 258 TFITRSVEKNVSPLILKNITGHATFKQLNNY 288


>gi|146307138|ref|YP_001187603.1| phage integrase family protein [Pseudomonas mendocina ymp]
 gi|145575339|gb|ABP84871.1| phage integrase family protein [Pseudomonas mendocina ymp]
          Length = 335

 Score = 88.9 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 45/313 (14%), Positives = 91/313 (29%), Gaps = 18/313 (5%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEY 78
           G+         GRR R  +  +        +          +   P+ +   L  L + Y
Sbjct: 9   GRWKVDVEPIKGRRFRKTFKTKGEAQRFEATCRANCIESPAWTPKPKDRRR-LSELCTRY 67

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI---RSGVESRKHTPSSAIQ 135
            +  H  +LA     +       + +  GD    K+T       R+ +        +   
Sbjct: 68  HE-LHGHALADG--AAILRTLQNLAKDLGDPIAVKLTGNAFCETRNALLKAGIQGKTLNN 124

Query: 136 FLTSMRVLFKWAVRQEYVA-INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ--- 191
            L  ++ +F    R   +   NP   V   + +   I   +   + +      E +    
Sbjct: 125 RLGYLKAMFNELHRLGDIDYPNPLAKVRPLRLQERPISFLSTCQIAELLDALDERTTSPG 184

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251
             L     L +G R  ++     + ++N + +    K+    ++ +     K L +    
Sbjct: 185 IGLIARVCLSTGARWGEAQALTPERVRNGMVTFANTKSKRTRSIPIDSALEKALHVYFKR 244

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATY 311
              F   N     +        K  A +A      H +R   A+     G     L    
Sbjct: 245 HGLF--TNCMLTFSRVLEKTSIKLPAGQA-----THVLRHTFASHFVMRGGNILTLQKIL 297

Query: 312 GWKTVDQAETYTK 324
           G  ++     Y  
Sbjct: 298 GHTSLAMTMRYAH 310


>gi|9635493|ref|NP_059584.1| Int [Enterobacteria phage P22]
 gi|168240064|ref|ZP_02664996.1| site-specific recombinase, phage integrase family [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|194450412|ref|YP_002044308.1| site-specific recombinase, phage integrase family [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|138565|sp|P04890|VINT_BPP22 RecName: Full=Integrase
 gi|21914435|gb|AAM81400.1|AF527608_22 Int protein [Salmonella phage P22-pbi]
 gi|15642|emb|CAA27685.1| unnamed protein product [Enterobacteria phage P22]
 gi|8439580|gb|AAF75002.1| integrase [Enterobacteria phage P22]
 gi|16209133|gb|AAL09889.1| integrase [CRIM helper plasmid pAH130]
 gi|16209140|gb|AAL09894.1| integrase [CRIM helper plasmid pAH131]
 gi|28394284|tpg|DAA00998.1| TPA_inf: integrase [Enterobacteria phage P22]
 gi|157734732|dbj|BAF80738.1| integrase [Enterobacteria phage P22]
 gi|169658864|dbj|BAG12621.1| integrase [Enterobacteria phage P22]
 gi|194408716|gb|ACF68935.1| site-specific recombinase, phage integrase family [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|205339757|gb|EDZ26521.1| site-specific recombinase, phage integrase family [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
          Length = 387

 Score = 88.9 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 48/273 (17%), Positives = 100/273 (36%), Gaps = 29/273 (10%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQ 135
           + +      L   +     S   +I  +  + +++ +     ++G +    K  P++   
Sbjct: 86  WLQHFAGMQLKDITETKIYSAIQKITNRRHEENWKLMDEACRKNGKQPPVFKPKPAAVAT 145

Query: 136 ---FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
               L+ ++ L + A  +E+  ++    ++ P+ K + IR     + ++      E  + 
Sbjct: 146 KATHLSFIKALLR-AAEREWKMLDKAPIIKVPQPKNKRIRWLEPHEAKRLIDECQEPLKS 204

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGFMKLLAMT 248
               EF L +GLR S+      Q +           +  K+   I V L D   ++L   
Sbjct: 205 --VVEFALSTGLRRSNIINLEWQQIDMQRKVAWIHPEQSKSNHAIGVALNDTACRVLKKQ 262

Query: 249 PIGKETFFINNDK--------------QKMNATQFSIWFKAKATKAGV-NKSAHGVRKFS 293
            IG    ++   K              +KM     + W +A   +AG+ +   H +R   
Sbjct: 263 -IGNHHKWVFVYKESSTKPDGTKSPVVRKMRYDANTAW-RAALKRAGIEDFRFHDLRHTW 320

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           A+    AG     L    GW++++    Y   A
Sbjct: 321 ASWLVQAGVPISVLQEMGGWESIEMVRRYAHLA 353


>gi|325673461|ref|ZP_08153152.1| integrase/recombinase XerD [Rhodococcus equi ATCC 33707]
 gi|325555482|gb|EGD25153.1| integrase/recombinase XerD [Rhodococcus equi ATCC 33707]
          Length = 313

 Score = 88.9 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/275 (12%), Positives = 83/275 (30%), Gaps = 29/275 (10%)

Query: 85  GSLAVNSRISFES----YFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI---QFL 137
              + ++  ++ +        + R   D     +  + +R+ + ++    ++     +  
Sbjct: 29  RGRSEHTVRAYRADVAGLLGFLCRDRPDAVLADLDLRVLRAWLAAQAAAGTARTTLARRT 88

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS------- 190
           +S +    WA R   + ++P + +  PK          +E   +       G+       
Sbjct: 89  SSAKGFTAWAERTGRMPVDPGIRLVAPKAHRTLPPVLRQEQAAEAMVAAESGAAQEDPVA 148

Query: 191 -QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMT 248
            + RL  E L  +G+R  + C   +  + ++   ++   K      V         +   
Sbjct: 149 VRDRLIVELLYSTGIRVGELCGLDLGDIDHDRRVLRVLGKGDKERVVPFGRPAEDAIGAW 208

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATK------------AGVNKSAHGVRKFSATI 296
                   +N                 +                  + + HG+R  +AT 
Sbjct: 209 LRSGRPELVNERSGDALLLGRRGGRLDQRQARAVVHDVVQAVPGAPDLAPHGLRHSAATH 268

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
             + GA    +    G  ++   + YT      RL
Sbjct: 269 LLEGGADLRVVQELLGHSSLATTQLYTH-VSVARL 302


>gi|261210225|ref|ZP_05924522.1| integrase [Vibrio sp. RC341]
 gi|260840765|gb|EEX67314.1| integrase [Vibrio sp. RC341]
          Length = 317

 Score = 88.9 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 43/279 (15%), Positives = 92/279 (32%), Gaps = 20/279 (7%)

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128
            TL  LI+ + +  H  +L+ + R        +I    G+     +T++      E R  
Sbjct: 46  RTLDELITIWYR-MHGKTLSDHIR--LRKLLYRISECLGNPVGSDLTSEMFAKYRERRTL 102

Query: 129 --TPSSAIQFLTSMRVLFKWAVRQEYVA-INPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
             + ++  +  + +R +F    R   +   NP   + + +     +R  + +++ +    
Sbjct: 103 EVSLTTVNREHSYLRAVFNELDRLGVITYENPLTKIRQFREAEGELRFLSHDEIARLLEQ 162

Query: 186 WSEGSQPRLA--FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM- 242
               +   L    +  L +G R  ++       + N   +    K+    TV +      
Sbjct: 163 CKVSTNKSLIHVVKICLATGARWGEAENLKPSQIANGKVTFLNTKSKKNRTVPINQILFN 222

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGA 302
           +L  + P      F+       +   F         +    ++ H +R   A+     G 
Sbjct: 223 ELEELEPFSNSRMFVG------SLAAFRTALSRADIELPAGQNTHVLRHTFASHYVMGGG 276

Query: 303 TAHELMATYGWKTVDQAETYTKGA-----DRIRLGIKNS 336
              +L    G K +     Y   A     D +RL   N 
Sbjct: 277 NIVKLRDVLGHKEITTTMRYAHLAPDHLEDALRLNPLNM 315


>gi|146310657|ref|YP_001175731.1| phage integrase family protein [Enterobacter sp. 638]
 gi|145317533|gb|ABP59680.1| phage integrase family protein [Enterobacter sp. 638]
          Length = 387

 Score = 88.9 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 60/355 (16%), Positives = 111/355 (31%), Gaps = 52/355 (14%)

Query: 17  RHGKIIYYFRKGHGRRIRLP-YPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75
           R G    +F    G+RIR      +          L     + + I        T +   
Sbjct: 6   RGGVWHCHFVTPSGQRIRRSLGTGDKKQAQELHDKLKSEAWRVDKIG--ELATRTFEECC 63

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQII---------RKSGDFDYRKITTKHIRSGVESR 126
             + +         + R   E +               +  D   + +  KHI+     R
Sbjct: 64  IRWIREKDHKRSLDDDRTKIEYFLRHFSGRDVSTITAEQVHDAVSKMVNRKHIQVWESRR 123

Query: 127 -------------KHTP---SSAIQFLTSMRVLFKWA-VRQEYVAINPCLSVERPKRKTE 169
                           P   ++  Q L+ MR L K A     ++   P   ++  K  ++
Sbjct: 124 DAAIRRGKEPPPYGDKPVSQATKSQHLSFMRSLLKAAADDWGWIKSAPA--IKTRKPVSK 181

Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIK 225
            IR  T+++ ++      E  +P + F     +GLR S+      Q +         + +
Sbjct: 182 RIRWLTRDEAERLIECMPESIKPVVIFALA--TGLRRSNIVDLEWQQVDMQRKVAWVNPE 239

Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA--TQFSIWFKAKA------ 277
             K G  I V L D   ++L    IGK   ++    +         +   +         
Sbjct: 240 NAKAGKAIGVALNDTACRVLRNQ-IGKSKVWVFAHTKAATRPDGTLTPAVRKMRIDDNTA 298

Query: 278 -----TKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
                 KAG+ +   H +R   A+    +G     L    GW++++    Y   A
Sbjct: 299 WKIGLEKAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLA 353


>gi|183219889|ref|YP_001837885.1| putative integrase/recombinase [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|189910016|ref|YP_001961571.1| tyrosine site-specific recombinase XerC [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167774692|gb|ABZ92993.1| Tyrosine site-specific recombinase XerC [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167778311|gb|ABZ96609.1| Putative integrase/recombinase [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 428

 Score = 88.9 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 37/281 (13%), Positives = 86/281 (30%), Gaps = 30/281 (10%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           ++ ++ ++A   + +  +  ++ S+  +++  +       I ++ + + ++ +    +  
Sbjct: 136 ILEDFFRAARERNFSFCTTKTYYSHLYRLLLFTEKLPI-NINSRDLENYLDFQVKEKTVK 194

Query: 134 IQFLTSMRVLFKW---AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
              +   R  F +    VRQ+       L   + K   +     + E+ +   +      
Sbjct: 195 SATIRGARQAFIFYFRDVRQQMKH----LKFPKIKSDVKLPEVLSAEETRAIFNSLPNIK 250

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMT 248
              L       +GLR S+      + +    N+  I   K        L +  +  L   
Sbjct: 251 HKML-LLISYSAGLRVSEVIHLKTKDIDLERNMIRITQGKGKKDRYTILANSLVFELQEY 309

Query: 249 PIGKETFFINNDKQ------KMNATQFSIWFKAKATKAGV------------NKSAHGVR 290
              +E   +                          T   +              + H +R
Sbjct: 310 LKIREYNLLLKYSYNEVKNIPWLFPGAGTKPLHIRTAETIFNQAAAKAKITKKVTFHSLR 369

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
              AT   + G     +    G  +V   + YTK A R RL
Sbjct: 370 HAFATHLLELGTDLRMIQTLLGHSSVRTTQIYTKVA-RSRL 409


>gi|150398130|ref|YP_001328597.1| site-specific tyrosine recombinase XerC [Sinorhizobium medicae
           WSM419]
 gi|150029645|gb|ABR61762.1| phage integrase family protein [Sinorhizobium medicae WSM419]
          Length = 313

 Score = 88.9 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 46/285 (16%), Positives = 83/285 (29%), Gaps = 30/285 (10%)

Query: 76  SEYRKS-AHWGSLAVNSRISFESYFDQIIRKS-GDF-------DYRKITTKHIRSGVESR 126
             +  S A    L+  +  ++E    Q +    G         D R +    +R  +  R
Sbjct: 19  KRWLASLAEERRLSGKTVEAYERDTRQFLTFLTGHLAGPPRLSDIRALRPADLRGFLAQR 78

Query: 127 KHTPSSAIQF---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM---- 179
           +   + A      L  +R   ++  +          +V  PK+     +P T  D     
Sbjct: 79  RKGGAGARTLGRGLAGLRSFLRYLEKNGLANAAGAGAVRSPKQPKSLPKPLTDRDALKVV 138

Query: 180 ---QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITV 235
               Q        ++       L   GLR +++             S++ T K G    V
Sbjct: 139 TTDSQLAEEPWIAARNAAVLTLLYGCGLRIAEALDLTPADFTETARSLRVTGKGGKTRIV 198

Query: 236 ELPDGFMKLLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSA 286
            L     + +              E  F      K+         +   +  G+    + 
Sbjct: 199 PLIAAAAEAVTTYRKLCPYHIEAGEPIFRGARGAKLQPAIIQREMQKLRSALGLPDSATP 258

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           H +R   AT     G     +    G  ++   + YT G D  RL
Sbjct: 259 HALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYT-GVDSARL 302


>gi|322433741|ref|YP_004215953.1| integrase family protein [Acidobacterium sp. MP5ACTX9]
 gi|321161468|gb|ADW67173.1| integrase family protein [Acidobacterium sp. MP5ACTX9]
          Length = 395

 Score = 88.9 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 62/306 (20%), Positives = 108/306 (35%), Gaps = 39/306 (12%)

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESY---FDQIIRKSGDFDYRKITTKHIRSGVE- 124
            +   +I EY     +      ++ +  +    F   + + G  D   +T K +   +  
Sbjct: 72  GSFLSVIKEYL--DGFCRQHYKNQGTIRAAVCPFILFLNERGITDLENVTPKTVTEFISW 129

Query: 125 ----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI-NPCLS-VERPKRKTEGIRPWTKED 178
                 K +P    Q ++ +   FKWA+R  +    +P ++     KR     RP+T E+
Sbjct: 130 ATEVDYKSSP----QHISVLNGFFKWALRHGHRKSGSPVIAKFHGKKRAQHLPRPYTAEE 185

Query: 179 MQQFKSFWSE--GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK-TQKTGTII 233
           M    +   E   S+ R        SGLR  + CR   + +    +   ++   KT    
Sbjct: 186 MTIIWALAEERGNSRLRAIIAIGEESGLRLGEICRLREEDVDLVGHRLFVRLPNKTDCER 245

Query: 234 TVELPDGFMKLL------AMTPIGKETFFINNDKQKMNATQF-SIWFKAKATK------- 279
                D   + +           G +  F N+      A        +            
Sbjct: 246 WAPFSDKTARYILEWRSERDDKCGHDFLFHNSLGDPPRADTMHRELCRTFCKIHGGTQVN 305

Query: 280 -AGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLG-IKN 335
            +G++  S H +R   A+  A  GA+   +MA  GWK+      YTK  AD+ R G  + 
Sbjct: 306 PSGLDEWSTHRLRHTMASRLASGGASFPTIMAAGGWKSPSSMMHYTKVDADQARHGYDQA 365

Query: 336 SRRISS 341
            RR   
Sbjct: 366 MRRAEE 371


>gi|239815408|ref|YP_002944318.1| integrase family protein [Variovorax paradoxus S110]
 gi|239801985|gb|ACS19052.1| integrase family protein [Variovorax paradoxus S110]
          Length = 362

 Score = 88.9 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 55/305 (18%), Positives = 115/305 (37%), Gaps = 34/305 (11%)

Query: 57  KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT 116
           K   I+  ++K  T++  + E+       +LA N+  S+ +    I  + GD    ++T 
Sbjct: 63  KARLIDRLQQKDKTVREWLKEWIGE---LTLAENTLKSYRAKSKAINEEMGDLALGRLTV 119

Query: 117 KHIRSGVE--SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
           K   + ++   +K    +A    + +   F  A+ + ++  NP L V   K+ T   + +
Sbjct: 120 KDTANALDEIKKKRGAPTAQVARSVLISAFGNAITKGHMETNPAL-VTEAKKTTVARQRF 178

Query: 175 TKEDMQQFKSFWSEGSQ-PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233
           T    ++  +   +G    R A    + +GLR  D        + ++   +  +K+  ++
Sbjct: 179 TTATFEKVWAGLQDGPPWLRNATLLAMITGLRREDIAGLKFTDVADDYLLVAPKKSQGMV 238

Query: 234 TVELPDGF------MKLLAMTPIGKETFFINND-------------KQKMNATQFSIWFK 274
            + +P         M L     + + T  ++                Q+M+ +  ++ F 
Sbjct: 239 KIAIPLALYSEAMKMSLKDAIAVCRRTGVVSQYMVHQTEHTGRSSPGQRMSLSTVTMRFS 298

Query: 275 AKATKA---GVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY--TKGADR 328
               KA   G N  + H +R      S  A        A  G      A+ Y   +GA+ 
Sbjct: 299 EYVAKALGEGENLPTFHELR-SLCKRSYQAQGGVDT-KALLGHLADSSADLYENNRGAEF 356

Query: 329 IRLGI 333
            ++ I
Sbjct: 357 KKVKI 361


>gi|242279119|ref|YP_002991248.1| integrase family protein [Desulfovibrio salexigens DSM 2638]
 gi|242122013|gb|ACS79709.1| integrase family protein [Desulfovibrio salexigens DSM 2638]
          Length = 395

 Score = 88.9 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 53/306 (17%), Positives = 97/306 (31%), Gaps = 29/306 (9%)

Query: 51  LTGSTPKREYINSPRKKPTTLKW----LISEYRKSAHWGSLAVNSRISFESYFDQIIRKS 106
               T K        +   T        I EY K+         +R  F  +   +I + 
Sbjct: 83  REAKTEKERVKRVEMQARKTFSEAGGVFIEEYSKNNKKSWRHDCTR--FRLHLQPVIGQI 140

Query: 107 GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA-INPCLSVERPK 165
              D R    + ++S V  +  +  +    LT  R +  +A+++ ++   NP   ++ PK
Sbjct: 141 YLDDLRLKHIEELKSVVTKKGLSKGTIKHCLTLARQICYYAIKRGWLTGDNPVKGIKFPK 200

Query: 166 RKTEGIRPWT-KEDMQQFKSFWSEG-SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNI 221
                +R  + +E+   F+   + G S+        LY+G+R  +      Q +    N 
Sbjct: 201 PNNRRLRYCSVEEEYDFFEMAVNMGYSECHDICLLSLYTGMRMGEIFALTRQDIDLVENR 260

Query: 222 FSIK--------TQKTGTIITV---ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ-- 268
             IK         +  G+ +     ++       LA+    +   F   +          
Sbjct: 261 IIIKGRSGADDGPKAGGSRVAYIIEKIRPMLENRLALFQGREALIFPKPNGGIRKCIGPD 320

Query: 269 FSIWFKAKATKAGVNKS-----AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           F+   K      GV        AH  R   A+     GA    +    G   +     YT
Sbjct: 321 FATLMKHLGWNDGVTDRRLRFCAHCFRHTFASRLIAKGAPLTVVKKMLGHSNIQTTMRYT 380

Query: 324 KGADRI 329
              D  
Sbjct: 381 HTQDEQ 386


>gi|120609104|ref|YP_968782.1| phage integrase family protein [Acidovorax citrulli AAC00-1]
 gi|120587568|gb|ABM31008.1| phage integrase family protein [Acidovorax citrulli AAC00-1]
          Length = 332

 Score = 88.9 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 49/297 (16%), Positives = 100/297 (33%), Gaps = 24/297 (8%)

Query: 44  IPAYMSALTGSTPKREYINSPRKKPTTL-KWLISEYRKSAHWGSLAVNSRISFESYFDQI 102
                + +  S  +R    S  +   TL    +  YR+       +   + + ES    +
Sbjct: 33  DAERWATIVESEMERGMFVSRTEAEATLVSDAVERYRREVL---PSKRGKAADESRLKTL 89

Query: 103 IRKSGDFDYRKITTKHIRSGVESR--KHTPSSA-------IQFLTSMRVLFKWAVRQEYV 153
           +R  G +    +T+  I    + R     P S         + L +  + +  A+     
Sbjct: 90  LRYFGSYKLAALTSTLIAQFRDERLTAVGPQSVIHEINLLNRVLKAAVMDWGIALPHGL- 148

Query: 154 AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG 213
              P  +V +P +     R  ++E++    +  S  S+  +A    + +G+R  +     
Sbjct: 149 ---PTTNVRKPAKPKGRERRVSQEEIAAIVA-HSSSSELSVAITVAVETGMRRGELAALT 204

Query: 214 VQHLQN--NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ-KMNATQFS 270
             ++        I   KT    TV L    +  L             + +   M A    
Sbjct: 205 WSNVDLIKRTAHIPLTKTDAPRTVPLSSTAVAALQRLLPPHTEVIGKDRRVFAMQAASMQ 264

Query: 271 IWFKAKAT--KAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              +      +A + N   H +R  + +   + G +  E+ A  G KT++  + YT 
Sbjct: 265 QALERACQAHRADIHNLRFHDLRHEATSRFFEKGLSMMEVAAITGHKTLEMLKRYTH 321


>gi|13476425|ref|NP_107995.1| integrase [Mesorhizobium loti MAFF303099]
 gi|14027186|dbj|BAB54140.1| integrase [Mesorhizobium loti MAFF303099]
          Length = 359

 Score = 88.9 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/225 (13%), Positives = 75/225 (33%), Gaps = 15/225 (6%)

Query: 110 DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
            + + T  ++   +  R ++ ++  + + ++  L + A +   +   P     R K +  
Sbjct: 83  AFDQSTLDNLIGTLRQRGNSNATINRKMAALSKLLRKAHKMGDIHSLP--EFRRQKERAG 140

Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY-SGLRCSDSCRAGVQHLQNNIFSIKTQK 228
            IR   +++  +  +     S+        L  SG R  ++       +Q +  S    K
Sbjct: 141 RIRFLERDEEARLFAAIRGRSEDAYRLSVFLVDSGCRLGEALGLIWNDIQEHRVSFWITK 200

Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA---TQFSIWFKAKATKAGVNKS 285
           +G   T+ + +   +++ + P           K         Q+   +     + G+   
Sbjct: 201 SGRSRTIPMTERVKEVIKLPPTEG-----RRPKGPFTKLSQAQYRAIWNDAKAEVGLGAD 255

Query: 286 ----AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
                H +R   A+     G     +    G +T+     Y   A
Sbjct: 256 DQVVPHILRHTCASRLVQGGIDIRRVQMWLGHQTLSMTMRYAHLA 300


>gi|322614413|gb|EFY11344.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 315996572]
 gi|322621522|gb|EFY18375.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-1]
 gi|322624383|gb|EFY21216.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-3]
 gi|322626580|gb|EFY23385.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-4]
 gi|322633558|gb|EFY30300.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 515920-1]
 gi|322638399|gb|EFY35097.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 515920-2]
 gi|322647302|gb|EFY43798.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. NC_MB110209-0054]
 gi|322649302|gb|EFY45739.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. OH_2009072675]
 gi|322655977|gb|EFY52277.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. CASC_09SCPH15965]
 gi|322661373|gb|EFY57598.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 19N]
 gi|322662570|gb|EFY58778.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 81038-01]
 gi|322666944|gb|EFY63119.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. MD_MDA09249507]
 gi|322671314|gb|EFY67437.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 414877]
 gi|322677679|gb|EFY73742.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 366867]
 gi|322681494|gb|EFY77524.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 413180]
 gi|322683894|gb|EFY79904.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 446600]
 gi|323195464|gb|EFZ80642.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 609458-1]
 gi|323197494|gb|EFZ82631.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 556150-1]
 gi|323203015|gb|EFZ88047.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 609460]
 gi|323205255|gb|EFZ90230.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 507440-20]
 gi|323210594|gb|EFZ95478.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 556152]
 gi|323218124|gb|EGA02836.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB101509-0077]
 gi|323221609|gb|EGA06022.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB102109-0047]
 gi|323227630|gb|EGA11785.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB110209-0055]
 gi|323230888|gb|EGA15006.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB111609-0052]
 gi|323234760|gb|EGA18846.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 2009083312]
 gi|323238800|gb|EGA22850.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 2009085258]
 gi|323241499|gb|EGA25530.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 315731156]
 gi|323248355|gb|EGA32291.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2009159199]
 gi|323252880|gb|EGA36714.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008282]
 gi|323256999|gb|EGA40708.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008283]
 gi|323260527|gb|EGA44138.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008284]
 gi|323264415|gb|EGA47921.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008285]
 gi|323269549|gb|EGA53002.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008287]
          Length = 339

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 46/321 (14%), Positives = 90/321 (28%), Gaps = 45/321 (14%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87
             G+R+R           A+ +       K+ ++     +   L  +I +      W SL
Sbjct: 20  RDGKRVR-KQFATKGEAVAFENFTMDEVNKKPWLGEKEDRRH-LSEVIEQ------WHSL 71

Query: 88  AVNSRISFESY---FDQIIRKSGDFDYRKITTKHIRSGVESRKH--------------TP 130
              +    +        I    GD    ++T        E+R                 P
Sbjct: 72  YGQTLADPKRLMAKLRIICTGLGDPIASELTAGDFTKYREARLKGEVRNEDGAFMSPVKP 131

Query: 131 SSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            +      ++  +F    +   + A NP   +   K     +   T E++++     ++ 
Sbjct: 132 RTVNLEQRNLSSVFGTLKKLGHWSAPNPLAGLPTFKIAEGELAFLTPEEIKRLLGACADS 191

Query: 190 SQPRLAF--EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
             P L    +  L +G R S++       L     +    K     TV +       L  
Sbjct: 192 QSPSLLMIAKVCLATGARWSEAENLQGHQLSKYRITYTKTKGKKNRTVPISQDLYAELPK 251

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV----NKSAHGVRKFSATISADAGAT 303
                      N  +          F+    +AG+     +  H +R   A+     G  
Sbjct: 252 -----------NRGKLFTP--CRKAFERAVKRAGIELPEGQCTHVLRHTFASHFMMNGGN 298

Query: 304 AHELMATYGWKTVDQAETYTK 324
              L    G   +     Y+ 
Sbjct: 299 ILVLRDILGHSDIKMTMVYSH 319


>gi|260599046|ref|YP_003211617.1| Integrase [Cronobacter turicensis z3032]
 gi|260218223|emb|CBA33120.1| Integrase [Cronobacter turicensis z3032]
          Length = 339

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 38/266 (14%), Positives = 73/266 (27%), Gaps = 37/266 (13%)

Query: 83  HWGSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGVESRKH----------- 128
            W SL   +    +    +   I    G+    ++T        E+R             
Sbjct: 67  QWHSLYGQTLADPKRLMAKLSIICNGLGNPIASELTAGDFTKYREARLKGEVRSEDGTLM 126

Query: 129 ---TPSSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
               P +      ++  +F    +   + A NP   +   K     +   T E++++   
Sbjct: 127 SPVKPRTVNLEQRNLSSVFGTLKKLGHWSAPNPLAGLPTFKIAEGELAFLTPEEIKRLLD 186

Query: 185 FWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
             +E   P   +  +  L +G R S++       L     +    K     TV +     
Sbjct: 187 ACAESQSPCLLMIAKICLATGARWSEAENLQGHQLSKYRITYTKTKGKKNRTVPISQDLY 246

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS----AHGVRKFSATISA 298
             L             N  +          F+    +AG++       H +R   A+   
Sbjct: 247 DELPK-----------NRGKLFTP--CRKAFERAVKRAGIDLPEGQCTHVLRHTFASHFM 293

Query: 299 DAGATAHELMATYGWKTVDQAETYTK 324
             G     L    G   +     Y  
Sbjct: 294 MNGGNILVLKEILGHADIKMTMIYAH 319


>gi|212691117|ref|ZP_03299245.1| hypothetical protein BACDOR_00607 [Bacteroides dorei DSM 17855]
 gi|212666349|gb|EEB26921.1| hypothetical protein BACDOR_00607 [Bacteroides dorei DSM 17855]
          Length = 415

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 44/264 (16%), Positives = 87/264 (32%), Gaps = 26/264 (9%)

Query: 75  ISEYRKSAHWGSLAVNSRISFES---YFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TP 130
           IS YR S ++     +   S       F++I    G         K  ++ +   K+ + 
Sbjct: 135 ISTYRNSQYFQKYLTDYLTSLGRKEIAFEEITEDFG---------KGYKAFLVRNKNFSS 185

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           +   + L  +  L   AV  E +  NP   VE  K+     +  T+E+M++  +      
Sbjct: 186 TQTNRCLCWLNRLLYLAVDNEILRTNPVEDVEYEKKPAPKHKYVTREEMKRIMAMPLNDG 245

Query: 191 QP---RLAFEFLLYSGLRCSDSCRAGVQHLQ-----NNIFSIKTQKTGTIITVELPDGFM 242
           +    R AF F   +GL  +D  +   +H++          I  +KT     + L     
Sbjct: 246 RAELGRRAFIFSCLTGLAYADIKQLHPRHIETTADGRRFIRICRKKTEVEAVIPLHPIAE 305

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADA 300
           ++LA+         +       +        +      G   + S H  R     +    
Sbjct: 306 QILALYNTTDMHNLVF---PLPSRDSIWHEIREIGVILGRNDDLSYHQARHGFGVLLISE 362

Query: 301 GATAHELMATYGWKTVDQAETYTK 324
             +   +    G   +   + Y +
Sbjct: 363 SVSIESIAKMMGHSNITTTQGYAR 386


>gi|169343416|ref|ZP_02864420.1| prophage lambdaba04, site-specific recombinase, phage integrase
           family [Clostridium perfringens C str. JGS1495]
 gi|169298502|gb|EDS80588.1| prophage lambdaba04, site-specific recombinase, phage integrase
           family [Clostridium perfringens C str. JGS1495]
          Length = 368

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 51/336 (15%), Positives = 113/336 (33%), Gaps = 46/336 (13%)

Query: 41  STFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD 100
             F+  Y      S+        P+ K   LK  I ++  +    S+ +N++ ++ S  +
Sbjct: 42  EKFVNEY------SSKVDNGFLLPKSKDIYLKDFILDWFYNHKVLSIGINTKNNYLSRIE 95

Query: 101 -QIIRKSGDFDYRKITTKHIRSGVE-----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVA 154
             II   G++   ++ T  I++             PSSA + + ++    K+A + + + 
Sbjct: 96  TYIIPLLGNYKLTELDTLTIQNFYNYLLTKDNPLKPSSAKKVIEALSNCLKYAKKLKLIT 155

Query: 155 INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGV 214
             P   +E+   +   I  W+K+ +  F +   + +           +G+R  + C    
Sbjct: 156 YLPT-DIEKVNIEKPKIEFWSKQQLDFFLNEIKD-TYLYFPVLICALTGVRVGELCGLKW 213

Query: 215 QHLQNNIFSIKTQK-------------------TGTIITVELPDGFMKLLAMTPIGKETF 255
             +      +   +                   T +  T+ +P   +K           F
Sbjct: 214 CDVDFGKSYLNITRQVISDKSTNTLVCTENLKTTKSDRTISIPKILLKEFEKNLKDPNDF 273

Query: 256 FINNDKQKMN-----ATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMAT 310
            + + + +M      +  F+        K     S HG+R   AT+    G     +   
Sbjct: 274 IVLSRENEMCNPRNISMDFTKKVNKYKDKL-PQISIHGLRHTHATLLILNGENIKIVSDR 332

Query: 311 YGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVVDS 345
            G   +     TYT       +  +     + ++D+
Sbjct: 333 LGHNDITTTLNTYTH------IMEEMKDNTAELLDN 362


>gi|15923382|ref|NP_370916.1| integrase-like protein [Staphylococcus aureus subsp. aureus Mu50]
 gi|156978720|ref|YP_001440979.1| integrase-like protein [Staphylococcus aureus subsp. aureus Mu3]
 gi|255005188|ref|ZP_05143789.2| integrase-like protein [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|257878702|ref|ZP_05658355.1| phage integrase [Enterococcus faecium 1,230,933]
 gi|261206968|ref|ZP_05921657.1| Int459 [Enterococcus faecium TC 6]
 gi|282926486|ref|ZP_06334117.1| integrase-like protein [Staphylococcus aureus A9765]
 gi|289168180|ref|YP_003446449.1| site-specific recombinase, phage integrase family [Streptococcus
           mitis B6]
 gi|289565395|ref|ZP_06445845.1| phage integrase family site-specific recombinase [Enterococcus
           faecium D344SRF]
 gi|294615418|ref|ZP_06695290.1| integrase [Enterococcus faecium E1636]
 gi|304380399|ref|ZP_07363079.1| phage integrase family site-specific recombinase [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
 gi|13274514|gb|AAK17958.1|AF329848_10 Int459 [Clostridium perfringens]
 gi|14246160|dbj|BAB56554.1| integrase homolog [Staphylococcus aureus subsp. aureus Mu50]
 gi|156720855|dbj|BAF77272.1| integrase homolog [Staphylococcus aureus subsp. aureus Mu3]
 gi|257812930|gb|EEV41688.1| phage integrase [Enterococcus faecium 1,230,933]
 gi|260078596|gb|EEW66298.1| Int459 [Enterococcus faecium TC 6]
 gi|269939969|emb|CBI48342.1| integrase [Staphylococcus aureus subsp. aureus TW20]
 gi|282592206|gb|EFB97226.1| integrase-like protein [Staphylococcus aureus A9765]
 gi|288907747|emb|CBJ22584.1| site-specific recombinase, phage integrase family [Streptococcus
           mitis B6]
 gi|289162885|gb|EFD10735.1| phage integrase family site-specific recombinase [Enterococcus
           faecium D344SRF]
 gi|291591700|gb|EFF23337.1| integrase [Enterococcus faecium E1636]
 gi|302179991|gb|ADK98559.1| phage integrase [Enterococcus faecium]
 gi|304341074|gb|EFM06994.1| phage integrase family site-specific recombinase [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
 gi|315035976|gb|EFT47908.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0027]
 gi|323465494|gb|ADX77647.1| integrase [Staphylococcus pseudintermedius ED99]
 gi|329313108|gb|AEB87521.1| Integrase -like protein [Staphylococcus aureus subsp. aureus T0131]
          Length = 397

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 51/342 (14%), Positives = 108/342 (31%), Gaps = 57/342 (16%)

Query: 23  YYFRKGHG--------RRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           YYFR   G        ++ R  +  +      Y   L      +    S  K   T K  
Sbjct: 14  YYFRANLGYDSKGKKIQKYRSGFTTKKEAREEYSKLLL----MKPEELSENKDKMTFKHY 69

Query: 75  ISE----YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
           I E    + K+     + + +  +      +            I    +++         
Sbjct: 70  IFEIFLPWYKT----QVKLRTYENRLPTIKKHFSYFDKMAVSDIEPIDVQNWQLKLSKKC 125

Query: 131 SSAIQFLTSMRVLFKWAVRQ----EYVAINPCLSVERPKRKTEGIRPWTKEDMQQF---- 182
            S   ++ +++ LF  A+ +         NP   +   K++   I  WTKE+ ++     
Sbjct: 126 KS--SYVRAVQGLFSVAMDRAIVLGITTTNPSKIIGNVKKQKSKIEFWTKEEFEKVISLI 183

Query: 183 --KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--------NNIFSIKTQ----- 227
             + ++       L F F+  +G+R  ++     + +         N     K Q     
Sbjct: 184 YKEDYYQHFLFISLWFLFM--TGMRIGEATAIQWEDIDFDSGVLTINKTLYYKNQSNYRF 241

Query: 228 ---KTGTIITVELPDG-----FMKLLAMTPIGKET-FFINNDKQKMNATQFSIWFKAKAT 278
              KT   +   + D        +   +     +T F ++ +         S   +  A 
Sbjct: 242 VEPKTKASVRHIVLDKCTLTYLSEWKEVQQNLIQTDFVMSYNGIPTQKHTLSYAIERYAK 301

Query: 279 KAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
            AG+++   HG+R   A++    G     +    G + ++  
Sbjct: 302 LAGIHRIRIHGLRHSHASLLISMGENPLIIKDRLGHEDIETT 343


>gi|320652542|gb|EFX20811.1| putative defective integrase; Qin prophage [Escherichia coli
           O157:H- str. H 2687]
          Length = 298

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 37/243 (15%), Positives = 76/243 (31%), Gaps = 46/243 (18%)

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             +  +   ++T++  +F++ V   Y+A NP   +   K       P ++E+  +     
Sbjct: 25  GRSAVTVNNYMTNLYAVFQFGVDNGYLADNPFKGISPLKESRTIPDPLSREEFIRLIDAC 84

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK-------------TQKTGT 231
               Q +  +   +Y+G+R  + C  G + +   N    I+                T  
Sbjct: 85  -RNQQAKNLWCVSVYTGIRPGELCALGWEDIDLKNGTMIIRRNLAKDRFTVPKTQAGTNR 143

Query: 232 IITV--ELPDGFMKLLAMTPIGKETFF--------------------------INNDKQK 263
           +I +     D     + +T + KE                             + N    
Sbjct: 144 VIHLIKPAIDALRSQMTLTRLSKEHIIDVHLREYGRTEKHKCTFVFQPEVSARVKNYGDH 203

Query: 264 MNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ET 321
                    + A   +AG+ ++ ++  R   A  S  AGA    +    G        + 
Sbjct: 204 FTVDSIRQMWDAAIKRAGLRHRKSYQSRHTYACWSLTAGANPAFIANQMGHADAQMVFQV 263

Query: 322 YTK 324
           Y K
Sbjct: 264 YGK 266


>gi|317055894|ref|YP_004104361.1| integrase family protein [Ruminococcus albus 7]
 gi|315448163|gb|ADU21727.1| integrase family protein [Ruminococcus albus 7]
          Length = 362

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 46/261 (17%), Positives = 94/261 (36%), Gaps = 32/261 (12%)

Query: 86  SLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQ---FLTSMR 141
            +  ++  ++ + F+  I+ + GD     +T   I + +  +     SA       T  +
Sbjct: 79  RVKESTLANYRNKFEKHILLEFGDIPCADLTAGRINAFINKKLADGLSASYVRDIFTVFK 138

Query: 142 VLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG-SQPRLAFEFL 199
            + K+A  +  +       +V  PK +   +   +  + ++  S+     S         
Sbjct: 139 TMLKYAQEEYGFRLS--LKNVVLPKAERNQVEKISDAEQKKLVSYLKANMSLTAFGILLS 196

Query: 200 LYSGLRCSDSCRAGVQHLQ--NNIFSIKT-----------QKTGTIIT----------VE 236
           L+ GLR  + C    + +   N I  I+            +KT  +I+          + 
Sbjct: 197 LFMGLRIGELCGLKWEDVDFRNKILHIRRTVQRISSANGNRKTKIVISAPKSATSFREIA 256

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSAT 295
           +PD  M+   M     + F ++   + +        +K     A V + + H +R   AT
Sbjct: 257 IPDMLMEYFEMFRDEADHFILSGTDKPVEPRTMQYRYKKILHTADVEDHNYHKLRHTFAT 316

Query: 296 ISADAGATAHELMATYGWKTV 316
            SA+ G     L A  G  +V
Sbjct: 317 NSAEKGFNVKALSAVLGHSSV 337


>gi|304389803|ref|ZP_07371762.1| integrase/recombinase XerD [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|315657108|ref|ZP_07909992.1| integrase/recombinase XerD [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
 gi|304326979|gb|EFL94218.1| integrase/recombinase XerD [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|315492211|gb|EFU81818.1| integrase/recombinase XerD [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
          Length = 323

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 39/281 (13%), Positives = 85/281 (30%), Gaps = 41/281 (14%)

Query: 85  GSLAVNSRISFESYFDQIIR-----KSGDFDYRK------ITTKHIRSGVESRKH---TP 130
             L+  +  ++ +   +++       SGD    +           IR+ + +      + 
Sbjct: 26  RGLSPQTVRAYLTDLRELMTFLVDSDSGDGPAAQQLRADLANPARIRAWLGAMSRAGMSR 85

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           ++  + + S R    WA  +  V  +   ++   +         +  D           +
Sbjct: 86  ATLARRVASFRTFASWAQVRGIVPGDAGQNLRASRPDNALPTVLSATDAAHLLETARAAA 145

Query: 191 QPRL-------------AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-- 235
            P               A E L  +G+R S+     + ++  +  +++    G    V  
Sbjct: 146 YPEASTAPNPVKLRDWAALELLYATGIRVSELTGLELGNINKSQRTVRVTGKGDKQRVVP 205

Query: 236 -----------ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-N 283
                       L  G   L+          F+      ++             +AGV +
Sbjct: 206 YGIPAGLALEEYLEKGRPALVNPEKPALNRVFLGAKGGMLDTRIVRGMLHRLTAQAGVPD 265

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              HG+R  +AT   D GA    +    G  ++   + YT 
Sbjct: 266 LGPHGLRHTAATHLLDGGADLRSVQEILGHASLATTQRYTH 306


>gi|209809323|ref|YP_002264861.1| site-specific recombinase IntIA [Aliivibrio salmonicida LFI1238]
 gi|208010885|emb|CAQ81288.1| site-specific recombinase IntIA [Aliivibrio salmonicida LFI1238]
          Length = 327

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 48/304 (15%), Positives = 92/304 (30%), Gaps = 51/304 (16%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           T +  I + R       LA N+   +  +    IR        +I    I S +E     
Sbjct: 10  TSQRFIDQLRIFIRTRGLAYNTEKHYIYWISSFIRFKNYTSKEEIEAFDIPSYLEHLVIK 69

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            + +     +      +  R+        L  +R K+ T+    +T    +      +  
Sbjct: 70  QNVSPNTQKTALNALVFLCREFLQQSVDSLDFKRSKKATKLPTVFT--HKEAMDVIHNLN 127

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN--IFSIKTQKTGTIITVELPDGFMKLLAM 247
              +L  + +  SGLR +++ R  V  +  +  I +IK+ K     T  LP+  +  +  
Sbjct: 128 HPIKLIAQLMYGSGLRINEALRLRVNDIDLDKKIITIKSGKGNKDRTSILPESVVDAIKT 187

Query: 248 T-----------------------------PIGKETF-----FIN-----------NDKQ 262
                                         P   +++     F +           + + 
Sbjct: 188 QLAFVKQQHKLDAINGNDEVYMSYALAEKYPTQAKSYGWQYVFPSPQISKDPRSEKHRRH 247

Query: 263 KMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
            +         K    K G++K A  H  R   AT   + GA    +    G   +   +
Sbjct: 248 HLLDRTIQSAVKKSILKVGIDKKASCHTFRHSFATRVLERGADLRTIQELLGHSDIKTTQ 307

Query: 321 TYTK 324
            YT 
Sbjct: 308 IYTH 311


>gi|319787522|ref|YP_004146997.1| integron integrase [Pseudoxanthomonas suwonensis 11-1]
 gi|317466034|gb|ADV27766.1| integron integrase [Pseudoxanthomonas suwonensis 11-1]
          Length = 335

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 49/313 (15%), Positives = 97/313 (30%), Gaps = 58/313 (18%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT---- 129
           L+ + R        ++ +  ++  +  + +R        ++    + + +          
Sbjct: 22  LLDQVRGRLRLKHYSLRTEQAYLYWIRRYVRAWLPRHPAELDGAAVEAFLTGLATRDNVA 81

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            S+  Q L ++  L++  +  E        +V R KR        ++  + +     S  
Sbjct: 82  ASTQNQALAALLFLYREVLGIELP---WMENVVRAKRPRRLPVVLSRAQVVRLLERLS-- 136

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLL-- 245
            +  L    L  SGLR  +  R  V+ +    N  +I+  K G      LP    + L  
Sbjct: 137 GREALMAGLLYGSGLRLMECARLRVKDVDLERNELTIRDGKGGKDRMTVLPGALREALLR 196

Query: 246 --------------------------------AMTPIGKETFFINND-----------KQ 262
                                           A    G +  F               + 
Sbjct: 197 QLAEVRLLHARDLACGLGRVHLPHALARKYPNAAAEPGWQYVFPATRISVDPRDGVRRRH 256

Query: 263 KMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
            ++        +  A +AG +K  + H +R   AT   ++GA    +    G K V   +
Sbjct: 257 HIDEKVLQSAVRRAAREAGFDKPVTPHTLRHCFATHLLESGADIRTVQELLGHKDVATTQ 316

Query: 321 TYTKGADRIRLGI 333
            YT   +R  LG+
Sbjct: 317 IYTHVLNRGALGV 329


>gi|325678330|ref|ZP_08157953.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
 gi|324109972|gb|EGC04165.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
          Length = 397

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 46/298 (15%), Positives = 95/298 (31%), Gaps = 48/298 (16%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI--------RS 121
           T   L  +YRK+     L   +        +++    G    + I+ + I         +
Sbjct: 69  TFMALAEDYRKTYAKTHLRATTFEKESYITNRVYPLIGHKKMKDISRRDIMLVVNELVYN 128

Query: 122 GVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR---KTEGIRPWT 175
               R   P    +    ++ +  +F +A+    ++ NP  +++ PK    K + +  + 
Sbjct: 129 SKNERTGKPLAYKTIKSHVSFVSRVFSYAIEIGALSDNPARNIKIPKTEENKPKEVEIYD 188

Query: 176 KEDMQQFKSFWS--EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ---- 227
            E+++Q           + ++    L+  G R  +      + +     + +I+      
Sbjct: 189 PEELRQLVKMLDDKVPMKYKMFVNLLIIMGGRKGEVLGLEWKDIDFRTRLITIRRASYYT 248

Query: 228 ----------KTGTIITV-----ELPDGFMKLLAMTPI----------GKETFFINNDKQ 262
                     KT     V     EL D  +K                   +  F   D +
Sbjct: 249 PEEGIFASDPKTEKSKRVKKYSQELLDLLLKYKQYQDEYKLSLGDKWQEHDRLFTQWDGR 308

Query: 263 KMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
            M+      W K    K G      H +R   ++I    G +  EL A  G  +++  
Sbjct: 309 PMHPNTPYSWLKEFCEKNGFQFHCLHSLRHSHSSIKICNGVSPAELSADLGHSSINVT 366


>gi|254162098|ref|YP_003045206.1| integrase [Escherichia coli B str. REL606]
 gi|253973999|gb|ACT39670.1| integrase [Escherichia coli B str. REL606]
          Length = 337

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 42/207 (20%), Positives = 77/207 (37%), Gaps = 10/207 (4%)

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYV-AINPCLSVERPKRKTEGIRPWTKEDM 179
           +   S+   PSS  + LT +  +F   +  E     +P    +R K +       T+E++
Sbjct: 111 ATRRSQGIKPSSINRDLTCISGMFTALIEAELFFGEHPIRGTKRLKEEKPETGYLTQEEI 170

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239
               +    G   ++A    L +G R  ++ R   +++ +N  +    KT    TV + +
Sbjct: 171 ALLLAALD-GDNKKIAI-LCLSTGARWGEAARLKAENIIHNRVTFVKTKTNKPRTVPISE 228

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISAD 299
              K++A    G    F + D  +   T      KA        ++ H +R   AT    
Sbjct: 229 AVAKMIADNKRG--FLFPDADYPRFRRT-----MKAIKPDLPTGQATHALRHSFATHFMI 281

Query: 300 AGATAHELMATYGWKTVDQAETYTKGA 326
            G +   L    G   ++Q   Y   A
Sbjct: 282 NGGSIITLQRILGHTRIEQTMVYAHFA 308


>gi|254466302|ref|ZP_05079713.1| site-specific recombinase, phage integrase family protein
           [Rhodobacterales bacterium Y4I]
 gi|206687210|gb|EDZ47692.1| site-specific recombinase, phage integrase family protein
           [Rhodobacterales bacterium Y4I]
          Length = 367

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 40/268 (14%), Positives = 81/268 (30%), Gaps = 30/268 (11%)

Query: 85  GSLAVNSRISFESYFDQIIRK----SGDFDYRKITTKHIRSGVESRKHTPSS---AIQFL 137
             +  ++   +  Y    I+      GD    ++T +H+    +       S     + +
Sbjct: 82  RRMERSTLRGYSDYVRLHIKNAEIGIGDRLIAQLTRRHVNEFRDRLLLNGRSEHLTRRAI 141

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW--TKEDMQQFKSFWSEGSQPRLA 195
           + ++++   A+    +  N    V   K      +    +KE ++       E  +P L 
Sbjct: 142 SVLKLILDHAIDNGQLFTNAAHGVRIIKSSRIDHKAPVPSKEMIRALIEAADEDFKPHLI 201

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ-----KTGTI------ITVELPDGFM 242
              L   GLR S+      Q +        I+ +     K G          +      +
Sbjct: 202 VSAL--GGLRASELRGLRWQDVDFDKGFIYIRQRADAYNKMGEPKSRAGYRDIPAGPMVL 259

Query: 243 KLLA-----MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATIS 297
             L               F       +  T     F+    K  V    H +R F+ ++ 
Sbjct: 260 NALRRWKLRCPKSDLGLVFPAPRGGILQHTNTQARFRKLQEKVEVTMRWHDLRHFAVSLW 319

Query: 298 ADAGATAHELMATYGWKTVDQA-ETYTK 324
            + G +  E+M   G  ++    E Y  
Sbjct: 320 IEQGFSIKEIMTFAGHSSIQMTMERYGH 347


>gi|312139234|ref|YP_004006570.1| tyrosine recombinase xerc [Rhodococcus equi 103S]
 gi|311888573|emb|CBH47885.1| tyrosine recombinase XerC [Rhodococcus equi 103S]
          Length = 313

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/275 (12%), Positives = 83/275 (30%), Gaps = 29/275 (10%)

Query: 85  GSLAVNSRISFES----YFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI---QFL 137
              + ++  ++ +        + R   D     +  + +R+ + ++    ++     +  
Sbjct: 29  RGRSEHTVRAYRADVAGLLGFLCRDRPDAVLADLDLRVLRAWLAAQAAAGTARTTLARRT 88

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS------- 190
           +S +    WA R   + ++P + +  PK          +E   +       G+       
Sbjct: 89  SSAKGFTAWAERTGRMPVDPGIRLVAPKAHRTLPPVLRQEQAAEAMVAAESGAAQEDPVA 148

Query: 191 -QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMT 248
            + RL  E L  +G+R  + C   +  + ++   ++   K      V         +   
Sbjct: 149 VRDRLIVELLYSTGIRVGELCGLDLGDIDHDRRVLRVLGKGDKERVVPFGRPAEDAIGAW 208

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATK------------AGVNKSAHGVRKFSATI 296
                   +N                 +                  + + HG+R  +AT 
Sbjct: 209 LRSGRPELVNERSGDALLLGRRGGRLDQRQARAVVHDVVQAVPGAPDLAPHGLRHSAATH 268

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
             + GA    +    G  ++   + YT      RL
Sbjct: 269 LLEGGADLRVVQELLGHSSLATTQLYTH-VSVARL 302


>gi|20387472|gb|AAM21921.1| probable integrase [Saccharomonospora phage PIS 136]
          Length = 406

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 51/296 (17%), Positives = 92/296 (31%), Gaps = 40/296 (13%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
               T       Y     + S     + S       +  + GD    ++  + I+  V+ 
Sbjct: 63  SARITWGEWWEIYSSKRQFVSAQERVKASMVRT--HLGPRWGDVPLNQLHRRDIQEWVDD 120

Query: 126 R---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
                ++PS       ++R   + AV  + ++ +P   V  P+         T ED+++ 
Sbjct: 121 LVRAGYSPSYVRSLFATLRASVREAVHHDMLSTDPSEGVRLPRISRRARVHTTLEDVERM 180

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ--------------K 228
           + +  +      A  FLL +GLR  +     V  +  +   +                 K
Sbjct: 181 RPYLPDVHAD--ALLFLLETGLRPGELAGLHVNRVDLDEGWLMVAEVYVDRRNIIRPIPK 238

Query: 229 TGTIITVELPD-----GFMKLLAMTPIGK-------------ETFFINNDKQKMNATQFS 270
            G + TV L          +L   T  G              +  F N     +      
Sbjct: 239 DGDVRTVPLTSRAISTARRQLERRTLSGGCGIPHSDGTECRQDLLFRNKRGGTLRPLLLG 298

Query: 271 IWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
              +  A KAG+  +  +  R+  AT +A  G  A  L    G   V     Y + 
Sbjct: 299 NRIREAAIKAGLPTRGGYSGRRGFATRAAAGGMDAFLLAEVMGHADVRVTREYVQQ 354


>gi|239917444|ref|YP_002957002.1| tyrosine recombinase XerC subunit [Micrococcus luteus NCTC 2665]
 gi|281414065|ref|ZP_06245807.1| tyrosine recombinase XerC subunit [Micrococcus luteus NCTC 2665]
 gi|239838651|gb|ACS30448.1| tyrosine recombinase XerC subunit [Micrococcus luteus NCTC 2665]
          Length = 346

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 48/328 (14%), Positives = 98/328 (29%), Gaps = 34/328 (10%)

Query: 33  IRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSR 92
            R P P ++ ++ A+   L     +       R     L+ LI     +A          
Sbjct: 13  PRAPSPRDTAWLEAFEEHLRHERNRSPQTV--RAYLADLRALIDHVVGTAGTSGTPAADD 70

Query: 93  ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEY 152
            +   +         + D   +  +   + +       ++  + + ++R    W  R+  
Sbjct: 71  DAPVRHAPSAPDVLAELDIEDL--RGWLAAMSGAGLARATLARRVAAVRTFTAWLRREGL 128

Query: 153 VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA----------------F 196
            + +P L +  P+ +        ++  ++  +   E      A                 
Sbjct: 129 RSDDPALRLRSPRPEGTLPHVLQEQQARRLLAAAQELVDAAAAGDDPVAHALALRDAALL 188

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAMT------- 248
           E L  +G R ++     V  L+     ++ T K     TV   D   + L          
Sbjct: 189 ELLYATGARVAELSALDVDDLEAGRGVVRLTGKGDRQRTVPYGDPAGRALQAWQRLGRPR 248

Query: 249 ---PIGKETFFINNDKQKMNATQFSIWFKAKATKAG--VNKSAHGVRKFSATISADAGAT 303
              P      F+     ++   Q            G    +  H +R  +AT   D GA 
Sbjct: 249 LARPDSGPALFLGARGGRLGVRQARTVVDRALEGLGDTAARGPHALRHTAATHLLDGGAD 308

Query: 304 AHELMATYGWKTVDQAETYTK-GADRIR 330
              +    G  ++   + YT    DR+R
Sbjct: 309 LRSVQELLGHASLRTTQVYTHVSIDRLR 336


>gi|315034182|gb|EFT46114.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0027]
          Length = 331

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 39/307 (12%), Positives = 96/307 (31%), Gaps = 31/307 (10%)

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK 113
              K +  +S +K    ++  +    +          +   ++ Y +  I          
Sbjct: 23  EFEKFKETSSKKKTQIEIRMALKRIFRQMELNGNRARTINDYQKYMNNFIEVCNIVYISD 82

Query: 114 ITTKHIRSGVESRKHTPSSAIQF-LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
           IT   I   +E+     +S  +    ++  +        ++       V + K   +   
Sbjct: 83  ITIDSIYEWLETMGSVQNSTKRIRYKALSAVLNRFFENGWIETK-FWRVIKIKVDEKVKE 141

Query: 173 PWTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSI 224
             T+ED+ +             +   A   +  +G+R +   +   +H+       I   
Sbjct: 142 AATQEDIDRLLRILDLSNYYEFRDACAVLLMFQTGIRINTLSQLENKHINFERKCLILDG 201

Query: 225 KTQKTGTIITVELPDGFMKLLAMTP-----------IGKETFFINNDKQKMNATQFSIWF 273
              K   +  + + D  ++++               +     FI  +   +  +  S   
Sbjct: 202 SIMKNHKLSILPISDEVLQMIVTLIKQNNLIRESKNVENSLIFITYEGTSIQKSDKSNAI 261

Query: 274 KAKATK-----AGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY-----T 323
           + +  +     A  N + HG+R+  AT     GA+   +    G   ++    Y     T
Sbjct: 262 RRRLGQYSKDFAIPNINPHGLRRGFATNLLKKGASVPLISKALGHADLETTSRYLYLDST 321

Query: 324 KGADRIR 330
           + A+ +R
Sbjct: 322 EAANELR 328


>gi|312872206|ref|ZP_07732279.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LEAF 2062A-h1]
 gi|311092290|gb|EFQ50661.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LEAF 2062A-h1]
          Length = 329

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/248 (14%), Positives = 77/248 (31%), Gaps = 14/248 (5%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS----AIQFLTSMRVL 143
           +  S   + +  + +  K    + R++ T  +R+ +   +H  +S           +   
Sbjct: 68  SEKSLTYYRATIEVMTTKI-KKNVREMETDDLRTYLTEYQHEKNSSKVTVDNIRRILSSF 126

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203
           F W   + Y+  +P   + + K        +T E +++ +    E  +     + L  +G
Sbjct: 127 FSWLEDENYILKSPARRIHKVKAALTIKETYTDEALEKMRDSCEEP-RDLALIDILASTG 185

Query: 204 LRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG-----FMKLLAMTPIGKETFFIN 258
           +R  +        +            G+   +   D       +  L          F++
Sbjct: 186 MRVGELVLLNRDDINFEERECVVFGKGSKERMVYFDARTKIHLLTYLQGRTDDNPALFVS 245

Query: 259 NDKQKMNAT--QFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKT 315
                            +    K  + K   H  R+  AT++ D G    +L    G K 
Sbjct: 246 LRAPHERLKIGGVECRLRELGNKLDIEKVHPHKFRRTLATMAIDKGMPIEQLQQLLGHKR 305

Query: 316 VDQAETYT 323
           +D    Y 
Sbjct: 306 IDTTLQYA 313


>gi|298388233|ref|ZP_06997754.1| integrase/recombinase XerD [Bacteroides sp. 1_1_14]
 gi|298259008|gb|EFI01911.1| integrase/recombinase XerD [Bacteroides sp. 1_1_14]
          Length = 170

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 45/140 (32%), Gaps = 7/140 (5%)

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLL---AMTP 249
            F  L  +GLR S+        +  +     ++  K        L    MK L       
Sbjct: 11  MFSILYSAGLRISELLELKPGDINESRSLIRVRQGKGKKDRYTLLSRPLMKKLTEYNRLY 70

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHEL 307
             K   F +   +    +  S   KA A +AG+ K    H +R   AT   + G     +
Sbjct: 71  KPKVWLFEHRPGEPFTESIVSKRLKAAAREAGITKRIYPHLLRHSFATHLLEQGTDIKIV 130

Query: 308 MATYGWKTVDQAETYTKGAD 327
               G   +   E Y   AD
Sbjct: 131 KELMGHNNIKTTERYVHIAD 150


>gi|52141786|ref|YP_085044.1| phage integrase [Bacillus cereus E33L]
 gi|51975255|gb|AAU16805.1| phage integrase [Bacillus cereus E33L]
          Length = 381

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 56/367 (15%), Positives = 121/367 (32%), Gaps = 61/367 (16%)

Query: 17  RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK--------- 67
           R    ++ FR      +R   P+   +              +       KK         
Sbjct: 5   RKFGDVWEFR------VRFKDPYTQKYKEKSKRGFKTKKEAQLAAAEEEKKLLNGLEVEI 58

Query: 68  -PTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVES 125
            PT+LK  + ++ K     ++  N+ I  E   +  II    + + +++     +  + S
Sbjct: 59  TPTSLKHYLRDWLKLFKQDNVRKNTFILHERNIEKHIIPYFQNMNIKELKPMMYQKFINS 118

Query: 126 RKHTPSSAIQFLTSMRVLFK----WAVRQEYVAINPCLSV---ERPKRKTEGIRPWTKED 178
                 S  + +  +          AV  + +  NPC  V    +  ++ EG++    ED
Sbjct: 119 LTDQGYS-KRTVQIIHGTMNNAMKKAVSLKKIENNPCEEVVISNKNNKEREGLKYMRSED 177

Query: 179 MQQFKSFWSEGSQPRLAF-EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-------- 229
           +  F     + +     F + LL +G+R  ++     + +     +I   KT        
Sbjct: 178 IPLFLKTSYQYNYIYYIFFKALLNTGMRKGEAAALQWKDINLKEHTITISKTLDFTAKTK 237

Query: 230 ----------GTIITVELPDGFMKLLAMTPI---------------GKETFFINNDKQKM 264
                      +  T+ +P   +  L                      +  F   D + +
Sbjct: 238 EELFGDTKTFTSKRTIMIPKSLVDELLAHKKWQNANKLVLQDAYEHELDLVFSRVDGKFL 297

Query: 265 NATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETY 322
             +     F     KA + +   H +R   A +  ++GA+   +    G K+++  +  Y
Sbjct: 298 PKSTLFNAFSRILKKANLPRLEIHSLRHTHAVLLLESGASMKYIQDRLGHKSIEITSNVY 357

Query: 323 TKGADRI 329
           +  +D+I
Sbjct: 358 SHISDKI 364


>gi|170717950|ref|YP_001784999.1| phage integrase family protein [Haemophilus somnus 2336]
 gi|168826079|gb|ACA31450.1| phage integrase family protein [Haemophilus somnus 2336]
          Length = 299

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 40/288 (13%), Positives = 98/288 (34%), Gaps = 36/288 (12%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE--SRK 127
           + + L+  +       +    +  S+++   QI++   D +  +I+   +    +    K
Sbjct: 2   SFEQLLHLFFLE---RNHRPATIRSYQNVIAQIVKFYPDKEPEQISKLDLLEWRKYCLNK 58

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVA--INPCLSV----ERPKRK---TEGIRPW--TK 176
            +P +   ++  ++ +F +A+  E      N    +    ++PK+K      I     + 
Sbjct: 59  MSPITWNSYIRHLKAIFNYAIDNELFEYPKNLFKGLMVRPDKPKKKLLTERQIHFLEISL 118

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQ--KTGTI 232
           E+ ++   +       +     L Y+ +R S   +  +  +     I +I+ +  K    
Sbjct: 119 ENEEKLPHYLQPAYFTKALIYTLKYTAIRQSQLLQLKISDIDMTSKIINIRAETNKNHEH 178

Query: 233 ITVELPDGFMKLLAMTP----------------IGKETFFINNDKQKMNATQFSIWFKAK 276
             + + D     L                    I + +    +  +KM   Q   +F+  
Sbjct: 179 HEIPISDKLYPYLKRLILESRARSTSSDEQLFNINRFSLVTTSRNKKMTEGQLVHFFRHI 238

Query: 277 ATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +   G   ++H  R  +AT         + +    G K +    TY  
Sbjct: 239 SEFIGFTVTSHRFRHTTATEVLKQSGDIYAVKQLLGHKDLTVTLTYIH 286


>gi|13473627|ref|NP_105195.1| site-specific tyrosine recombinase XerC [Mesorhizobium loti
           MAFF303099]
 gi|34222994|sp|Q98ED9|XERC_RHILO RecName: Full=Tyrosine recombinase xerC
 gi|14024377|dbj|BAB50981.1| site-specific recombinase, integrase/recombinase RipX; XerC
           [Mesorhizobium loti MAFF303099]
          Length = 312

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 48/291 (16%), Positives = 91/291 (31%), Gaps = 31/291 (10%)

Query: 71  LKWLISEYRKS-AHWGSLAVNSRISFESYFDQIIRKS--------GDFDYRKITTKHIRS 121
           L+     + K  A    L+  +  ++E    Q +           G  D   +    +R 
Sbjct: 12  LQAARESWLKMLARERRLSPETVEAYERDTRQFLHFLTGHCGGSPGISDIANLRPADLRG 71

Query: 122 GVESRKHTPSSAIQF---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
            + +R++  + A      L  +R L ++  R+  V      ++  P++     +P T  D
Sbjct: 72  FLAARRNAGAGARTLGRGLAGIRSLLRFLERRGLVNAAGAAALRAPRQPKSLPKPLTASD 131

Query: 179 MQQ-------FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKT 229
            +Q               ++       L  SGLR S++       L  + +     T K 
Sbjct: 132 AKQVVSVEGQLAEEPWIAARNAAVLTLLYGSGLRISEALGLAGADLASETDTVLRVTGKG 191

Query: 230 GTIITVELPDGFMKLLAMTPI-------GKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
           G    V +    ++ +A            K   F       +N            +   +
Sbjct: 192 GKTRLVPVLPVALRAIAEYRRLCPYHLDPKGLLFRGARGGPLNPAIIQRDMAKLRSALNL 251

Query: 283 N--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
               + H +R   AT     G     +    G  ++   + YT G D  RL
Sbjct: 252 PDTATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQIYT-GVDTARL 301


>gi|325860402|ref|ZP_08173514.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
 gi|325482060|gb|EGC85081.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
          Length = 404

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 42/252 (16%), Positives = 85/252 (33%), Gaps = 22/252 (8%)

Query: 90  NSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----SRKHTPSSAIQFLTSMRVLFK 145
           ++R   + +  +      D  + ++T   I            +  S+  +    ++ + +
Sbjct: 134 STRKRLQEFIQK-KYHVSDLAFSQLTESFIYELRAFCLSELGYQQSTFFRVAADLKTVCR 192

Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-----WSEGSQPRLAFEFLL 200
            A R+          V   + + +  +   KE + +FK+        E    R  F F  
Sbjct: 193 LAYREGLADTLLFDKVHIERGEKKAPKALDKEALDKFKALRFDELEKEMETARDVFLFAC 252

Query: 201 YSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF 255
           Y+G    D      +HL  +           QKTG +  ++L    ++L+      +   
Sbjct: 253 YTGAAYCDLMELSKKHLVRDDNGSLWLKFNRQKTGVLCRIKLLPEAVRLIEKMYSDERET 312

Query: 256 FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS-ADAGATAHELMATYG 312
            +   K  +    +    KA   +AG+    ++H  R   AT+   + G     +    G
Sbjct: 313 LLPFIKYPI----YQSCLKALRLRAGISFPFTSHTARHTFATLITLEQGVPIETVSKMLG 368

Query: 313 WKTVDQAETYTK 324
              V   E Y K
Sbjct: 369 HTNVSMTERYAK 380


>gi|320139614|gb|EFW31483.1| site-specific recombinase, phage integrase family [Staphylococcus
           aureus subsp. aureus MRSA131]
          Length = 345

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 50/325 (15%), Positives = 111/325 (34%), Gaps = 26/325 (8%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT--TLKWLIS 76
           GK   Y  K  G+R R               A +    K   + S        TL+    
Sbjct: 8   GKKWQYEFKYEGKRYRKKGFRTK------REANSAGLDKLNELRSGFNIDNYITLEEYFE 61

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRSGVE--SRKHTPSSA 133
            + K+     +  N+   + +    I + K G  +  KI  +  +  +   S++H   + 
Sbjct: 62  NWIKTYKQPVVKENTYRHYRNALQHIQKHKIGKMELSKINRQVYQKFINDYSKEHAKETI 121

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSV-----ERPKRKTEGIRPWTKEDMQQFKSFWSE 188
            +  +++R     A+    +  NP   V     +  K + E     T+ ++ +      +
Sbjct: 122 RKTNSAIRSALDDALYDGLIFKNPAYKVNYKAGKPTKSEQEKFISVTEYEILK-DHVRKK 180

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTG-TIITVELPDG----F 241
            ++  LA   ++ +G R S +    ++H+    N   I  +KT  +   + +        
Sbjct: 181 RTRSSLALFIMICTGCRVSGARNIKIEHINQVKNTIFIDERKTDTSPRYISIAKSDMKHI 240

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADA 300
           M +++   I  + +        +N    +   K+      +   ++H +R    +     
Sbjct: 241 MDVISTFAISYDGYIFKEAGSIINLHAINNALKSACRVNNIPIITSHALRHTHCSYLLAK 300

Query: 301 GATAHELMATYGWKTVD-QAETYTK 324
           G + H +    G K +      Y+ 
Sbjct: 301 GVSIHYISKRLGHKNIAITTSVYSH 325


>gi|184155133|ref|YP_001843473.1| integrase [Lactobacillus fermentum IFO 3956]
 gi|183226477|dbj|BAG26993.1| integrase [Lactobacillus fermentum IFO 3956]
          Length = 364

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/277 (12%), Positives = 88/277 (31%), Gaps = 28/277 (10%)

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127
           P   K   + Y++S    ++   + +++   ++ + +   +     I  +  R  +    
Sbjct: 66  PDYFKDWFNLYKRS----NVTERTALTYHQVYNALKQYL-NVPVEDIDRRRYRQFMVDFG 120

Query: 128 HTPS--SAIQFLTSMRVLFKWAVRQEYVAIN--PCLSVERPKRKTEGIRPWTKEDMQQFK 183
              +  +  +F + +    K A+    V  +      +   K KT  +   + +++Q+  
Sbjct: 121 SNRAKSTVSKFNSLIHACVKDAMYDGVVHKDFVASTDLVFDKSKTREVDYLSIDEIQRLV 180

Query: 184 SFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-----------IKTQK 228
           S      +     +      +Y+G R  +        ++NN  S            +  K
Sbjct: 181 SHLVKTRNVHFTSKYMILTAIYTGARLGEIQALTWSDIKNNTISINKSWNETTQDFQPTK 240

Query: 229 TGTII-TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS-- 285
             + I T+ + D  + LL      K+  F++       +   +   +       +N+   
Sbjct: 241 NESSIRTINVGDQLIALLKELNFNKKQIFVSQYHTVPTSAAVNKTLRESLKACHINRRGF 300

Query: 286 -AHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
             H +R          G   + +    G   +     
Sbjct: 301 HFHSLRHSHVAFLLANGIDLYAISKRLGHSDITTTSR 337


>gi|171057464|ref|YP_001789813.1| integrase family protein [Leptothrix cholodnii SP-6]
 gi|170774909|gb|ACB33048.1| integrase family protein [Leptothrix cholodnii SP-6]
          Length = 339

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 41/298 (13%), Positives = 86/298 (28%), Gaps = 38/298 (12%)

Query: 65  RKKPTTLKWLISEYRKSA--HWGSLAVNSRISFESYF--------DQIIRKSGDFDYRKI 114
           +  P +   L+  +         +L+  +  ++   F         ++ +         +
Sbjct: 8   KPAPPSFATLVQSFFAEHLTQQRALSPQTVAAYRDAFVLFLDFAQARLHKTPTTLSLADL 67

Query: 115 TTKHIRSGVE----SRKHTPSSAIQFLTSMRVLFKWAVRQE---YVAINPCLSVERPKRK 167
           T   I   ++     R +T  S    L ++R   K+A R++      +   L V   + +
Sbjct: 68  TPALILDFLDHLERDRHNTVRSRNARLAALRSFLKFAARRDVTALQVVEHALGVPMKRFE 127

Query: 168 TEGIRPWTKEDMQQFKSFWSEG---SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---NNI 221
                  T+E+M              + +L    L  +G R S+     V  +       
Sbjct: 128 RPMFEFLTREEMLAVIGAPGADWVSQRDKLLLALLYNTGARVSEVIGVKVGDVVLAPAAC 187

Query: 222 FSIKTQKTGTIITVELPDGFMKLLAMTP------IGKETFFINNDKQKMNATQFSIWFKA 275
             +   K     +V L    +K++                  N   Q M  +  +     
Sbjct: 188 VHLH-GKGRKQRSVPLWRSTVKVIRAWLRFNPELTPTSALLPNRSGQAMTRSNVTQRLAL 246

Query: 276 KATK--------AGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
                       AG   S H +R  +A     +G     +    G ++      Y + 
Sbjct: 247 AVKAAALTTPSLAGRTISPHCLRHSTAMHLLQSGVDISVIALWLGHESPATTHQYVEA 304


>gi|119714859|ref|YP_921824.1| phage integrase family protein [Nocardioides sp. JS614]
 gi|119535520|gb|ABL80137.1| phage integrase family protein [Nocardioides sp. JS614]
          Length = 412

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 48/259 (18%), Positives = 87/259 (33%), Gaps = 19/259 (7%)

Query: 85  GSLAVNSRISFESY----FDQIIRKSGDFDYRKITTKHIRSGVESRKHT--PSSAIQFLT 138
             L   S + +  Y     DQ+    G   + ++    I + V  R      ++    + 
Sbjct: 136 RGLTEKSIVRYRYYAVGLLDQVTTADGSVSWDRLNATMINAYVADRGRGYGVAAKAHVVG 195

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERP-KRKTEGIRPWTKEDMQQFKSFWS----EGSQPR 193
           S+R L +WA+    +  +    + +P   K    R  T + +    +        G++ R
Sbjct: 196 SVRCLLRWALSTGRLDRDLSAGILKPSGTKRSLPRGVTADQVAALLAVCDPTTAIGARDR 255

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP----DGFMKLLAMTP 249
                L+  GLR  ++    +  +      ++    G    + LP          L + P
Sbjct: 256 ALVLMLVRLGLRAGEAAHLMLDDIDWAGGQVRVTGKGREHVLPLPVDVGQALEAWLRLRP 315

Query: 250 IG-KETFF--INNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAH 305
                  F  +   +Q M A+  S      ++ AG+    AH +R  +A     AG T  
Sbjct: 316 EALDRAVFVRLRAPRQMMTASGTSGVIARLSSMAGIEPIHAHRLRHTAAMDVLAAGGTLS 375

Query: 306 ELMATYGWKTVDQAETYTK 324
           E     G        TY K
Sbjct: 376 EAKELLGHVYTVTTMTYAK 394


>gi|298373374|ref|ZP_06983363.1| integrase [Bacteroidetes oral taxon 274 str. F0058]
 gi|298274426|gb|EFI15978.1| integrase [Bacteroidetes oral taxon 274 str. F0058]
          Length = 409

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 64/198 (32%), Gaps = 17/198 (8%)

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-----FKSFWSEGSQPRL 194
           ++ + + A R+    +      +  K      +   KE + +     F+    +    R 
Sbjct: 192 LKTVCRLAYREGLTDVLLFDKAKISKGDKRLPKALDKEALDKLKALNFEDLEEDMETARD 251

Query: 195 AFEFLLYSGLRCSDSCRAGVQHL--QNN---IFSIKTQKTGTIITVELPDGFMKLLAMTP 249
            F F  Y+G    D    G +HL   +           KTG +  ++L    ++L+    
Sbjct: 252 IFLFACYTGAAYCDLMGLGKKHLFRDDGGSLWLKFNRHKTGVLCRIKLLPQAIRLMEKLH 311

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS-ADAGATAHE 306
                  +      M    +  + KA   +A +    + H  R   AT+   + G     
Sbjct: 312 SDGRETLL----PFMGYATYQSYLKALRLRADIPFPFTTHTARHTFATLITLEQGVPIET 367

Query: 307 LMATYGWKTVDQAETYTK 324
           +    G   V   E Y K
Sbjct: 368 VSKMLGHSNVSMTERYAK 385


>gi|288801474|ref|ZP_06406926.1| integrase [Prevotella sp. oral taxon 299 str. F0039]
 gi|288331555|gb|EFC70041.1| integrase [Prevotella sp. oral taxon 299 str. F0039]
          Length = 397

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 40/240 (16%), Positives = 82/240 (34%), Gaps = 29/240 (12%)

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQQFKSF 185
             + ++AI+ L + + +  +  +      +P L++  + KR   G    T E++      
Sbjct: 153 GQSFNTAIKTLKTFKTVIIFGRKAGVFNHDPFLNIHFKTKRVDRGF--LTDEEIDTI--M 208

Query: 186 WSEGSQPRL-----AFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVE 236
             E +  RL      F F  ++GL   D       ++             +KT T+  + 
Sbjct: 209 HKEFATQRLVNVRDIFLFSCFTGLAYVDVANLTADNIITMDGKQWIVTARKKTDTLSHIL 268

Query: 237 LPDG----FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290
           L D       K       G+    ++N        + + + K  A   G+NK  + H  R
Sbjct: 269 LLDIPKMIIEKYAGCAKNGRLIPILSN-------QRMNSYLKEIADVCGINKNLTFHMAR 321

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS--RRISSVVDSDDP 348
              AT+    G     +    G  ++   + Y +  ++          R++      + P
Sbjct: 322 HTFATMMLTKGVPVESVSKMLGHSSITTTQLYARITNKKIENDMLMVSRKLDKFNFVNSP 381


>gi|171913628|ref|ZP_02929098.1| phage integrase family protein [Verrucomicrobium spinosum DSM 4136]
          Length = 383

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 55/356 (15%), Positives = 109/356 (30%), Gaps = 62/356 (17%)

Query: 21  IIYYFRKGHGRRIRLPYPH---ESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW---- 73
           + +   +    R+R  +P       F    M  +     +   +     +  T  W    
Sbjct: 25  VRWKHPQPGKDRLRRRFPTHKAAKDFFDEKMREVLNRGRRGAGLPEEWVRDATWAWEQLE 84

Query: 74  --------LISEYRKSAHWGSLAVNSRISFESYFD-----------------QIIRKSGD 108
                   ++++Y +  +    +VN + + ESY +                 ++ R  GD
Sbjct: 85  PVGADLRTVVADYLRRHNLTQRSVNLKDAAESYLEAREGNHLAPRSLGDVRARLRRFYGD 144

Query: 109 FD----YRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC----LS 160
                    +    +RS +E       +   F   +   F+W   + Y   NP      +
Sbjct: 145 MPADCRVSDLERSDVRSWLEGLGLAAQTQRNFQRVLHTFFEWGKERGYCEENPAAIPRAN 204

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL-LYSGLRCSDSCRAGVQHLQN 219
            +R K     +  +T  +++          Q  LAF  L  + G+R ++  R     +  
Sbjct: 205 TKRNKTAARPVEIFTPAELRLILETCP---QELLAFHVLGAFCGIRTAELERLKWSDVDF 261

Query: 220 NIFSI----KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF----SI 271
               +    +  KT     V LPD     L           I +    +         S 
Sbjct: 262 ERALVSVSPEQSKTAARRFVPLPDAAKMWLLR---------IEDRGGAVTRHGLESHASR 312

Query: 272 WFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGA 326
            F+    K G+    +G+R   A+ +      A ++    G  +       Y + A
Sbjct: 313 QFRIALAKKGLPWKQNGMRHSFASYALALHEDAPKVSLWLGQSSPGVVFRHYRERA 368


>gi|153008277|ref|YP_001369492.1| site-specific tyrosine recombinase XerC [Ochrobactrum anthropi ATCC
           49188]
 gi|151560165|gb|ABS13663.1| tyrosine recombinase XerC [Ochrobactrum anthropi ATCC 49188]
          Length = 315

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 46/291 (15%), Positives = 94/291 (32%), Gaps = 31/291 (10%)

Query: 71  LKWLISEYRKS-AHWGSLAVNSRISFES----YFDQIIRKSGD----FDYRKITTKHIRS 121
           L     E+ K+      L+ N+  ++E     + + +    G+     D   +    +RS
Sbjct: 15  LAAAREEWLKTLKDARRLSENTLEAYERDTRQFLNFLTGHLGEPPSLKDVGNLRIADLRS 74

Query: 122 GVESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
            + SR++      +  + L  +R L +   ++         ++  P++     +P T ED
Sbjct: 75  FLASRRNEGVGARTLGRGLAGVRSLLRHLEKRGLANAAGASAMRAPRQPKSLPKPLTAED 134

Query: 179 MQQFKSFWS-------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN--IFSIKTQKT 229
            ++  +            ++       L   GLR S++       L ++       T K 
Sbjct: 135 ARRVVAADGQMAEEPWIAARNAAVLTLLYGCGLRISEALGLMGDALSDSTARSITITGKG 194

Query: 230 GTIITVELPDGFMKLLAMTPI-------GKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
                V L     + +A             +  F       ++A       +      G+
Sbjct: 195 NKARLVPLLPIVHRAVAQYRTLCPFDLSADKPLFRGAKGGVLHAAIIQREMQKLRAGLGL 254

Query: 283 N--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
               + H +R   AT     G     +    G  ++   + YT G D  RL
Sbjct: 255 PDSATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQVYT-GVDTERL 304


>gi|254228657|ref|ZP_04922081.1| Integrase [Vibrio sp. Ex25]
 gi|262395108|ref|YP_003286962.1| integrase [Vibrio sp. Ex25]
 gi|151938836|gb|EDN57670.1| Integrase [Vibrio sp. Ex25]
 gi|262338702|gb|ACY52497.1| integrase [Vibrio sp. Ex25]
          Length = 398

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 52/305 (17%), Positives = 107/305 (35%), Gaps = 28/305 (9%)

Query: 53  GSTPKREYINSPR--KKPTTLKWLISEYRKSAHWGSLAVNSRISFES-YFDQIIRKSGDF 109
           G +P +E   +    K   T      ++ +      +A ++R    S Y  ++  K G+ 
Sbjct: 79  GKSPAKEKARAKARMKDAETFGAWAQKWLRGYQ---MADSTRDMRRSVYVRELEGKFGNQ 135

Query: 110 DYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE--RPK 165
              +IT + +R+  ++   +  P++A+     +  +++WA+ +     NP   V      
Sbjct: 136 KLTEITHEDLRALTDAIVERGAPATAVHTRDIVLQVYRWAIERGQKVENPADLVRPASIA 195

Query: 166 RKTEGIRPWTKEDMQ-QFKSFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222
           R     R  T  ++   ++     G+ P  R A + LL + +R S+   A    +  +  
Sbjct: 196 RFEPRDRTLTPAEIGLMYRYMEKVGTTPSIRAAVKLLLLTMVRKSELTNATWNEINFSEA 255

Query: 223 SIK----TQKTGTIITVELPDGFMKLLAMTPI---GKETFFINNDKQ--KMNATQFSIWF 273
                    K      V L    M +L        G +    +       M++   +   
Sbjct: 256 LWTIPKERMKRRNPHLVFLSRQAMDILIALKTFAGGSDYILPSRYDSDAPMSSATMNRVM 315

Query: 274 K---AKATKAGVNKS---AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
                 A K G + S    H +R+ ++T+  +AG     +      +       Y K   
Sbjct: 316 DLTYKAAQKEGQSLSKFGPHDLRRTASTLLHEAGYNTDWIEKCLAHEQKGVRAVYNKAEY 375

Query: 328 RIRLG 332
           R +  
Sbjct: 376 REQRA 380


>gi|160876042|ref|YP_001555358.1| integrase family protein [Shewanella baltica OS195]
 gi|160861564|gb|ABX50098.1| integrase family protein [Shewanella baltica OS195]
          Length = 318

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 52/318 (16%), Positives = 107/318 (33%), Gaps = 30/318 (9%)

Query: 12  TKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
            +   R+GK    +R+              T    Y   +      ++++++P  +   L
Sbjct: 14  IRPSGRNGK---RYRRTF---------ETKTEATKYEKFILSQHHNKDWLDAPIDRRPLL 61

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHT 129
           + LI  +    H+    +   ++         +  G+    ++ T    +    R  K T
Sbjct: 62  E-LIDLWF---HFHGKNLKEGVNTRKNLITTCKLMGNPQSHQVNTNFYLNYRARRLEKIT 117

Query: 130 PSSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           P +A   LT ++ ++   +    +   +P  S    K + +     TK  + Q  +  S 
Sbjct: 118 PKTANLELTRLQGVYSVLIAAGEFAGEHPLKSAPPIKLQAKDQSFLTKPQIAQLLALLS- 176

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248
             +  L  +  L +G R S++       L ++  +    K G   T+ +   F   L   
Sbjct: 177 -GEMLLIVKICLSTGARWSEAQNLTSSQLLDDRINFINTKNGKNRTIPITREFRAEL--- 232

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELM 308
           P G    F +   Q      F    K+   +    +++H +R   A+     G     L 
Sbjct: 233 PNGNGRLFTDCYHQ------FLAVLKSSGIELPKGQASHVLRHTFASHFVMNGGNILTLQ 286

Query: 309 ATYGWKTVDQAETYTKGA 326
              G  ++     Y   A
Sbjct: 287 KILGHGSIQMTMRYAHLA 304


>gi|86747397|ref|YP_483893.1| site-specific tyrosine recombinase XerC [Rhodopseudomonas palustris
           HaA2]
 gi|86570425|gb|ABD04982.1| tyrosine recombinase XerC subunit [Rhodopseudomonas palustris HaA2]
          Length = 351

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 46/315 (14%), Positives = 94/315 (29%), Gaps = 37/315 (11%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQ-IIRKSGD 108
           +  S P    I+ P      L    + +         L+  +  ++     Q +   +G 
Sbjct: 29  MAKSQPMPPPIDLPCAAAD-LNAEFTRWLSHLRAERRLSGKTLEAYARDLRQFLFFLAGH 87

Query: 109 -------FDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPC 158
                    + ++ T  +R+ + +R+       S ++ L  +R   ++  R+   ++   
Sbjct: 88  WGGEVTLGRFARLETTDVRAFMAARRGDAIAGRSLMRALAGLRSFGRFLEREGKGSVGAL 147

Query: 159 LSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR---------LAFEFLLYSGLRCSDS 209
            +V  PK K    +P      ++         + R              L  SGLR S++
Sbjct: 148 SAVRAPKIKKSLPKPIQIAAAKRLADADERAGEDRETWVLVRDAAVMALLYGSGLRISEA 207

Query: 210 CRAGVQHL---QNNIFSIKTQKTGTIITVELPDG--------FMKLLAMTPIGKETFFIN 258
                + +         I   K      V + D                 P     F + 
Sbjct: 208 LGLKRRDVPAPGKGDTLIVLGKGNKTRMVPVLDAVLAQIADYAKACPHPLPPDGPMF-VG 266

Query: 259 NDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTV 316
                ++     +  +      G+    + H +R   AT     G     +    G  ++
Sbjct: 267 ARGGPLSPRIIQLAMERLRGALGLPDSATPHALRHSFATHLLSRGGDLRAIQELLGHASL 326

Query: 317 DQAETYTKGADRIRL 331
              + YT G D  RL
Sbjct: 327 STTQIYT-GIDTERL 340


>gi|31580573|gb|AAP51266.1| integrase [Staphylococcus aureus]
 gi|31580575|gb|AAP51267.1| integrase [Staphylococcus aureus]
 gi|31580577|gb|AAP51268.1| integrase [Staphylococcus aureus]
          Length = 378

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 41/315 (13%), Positives = 102/315 (32%), Gaps = 41/315 (13%)

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128
           TT K +   + +           +     +   I+    +   + IT  + +  +     
Sbjct: 65  TTFKQVYDLWLEQYKHTVRESTYQRVVTLFNTAILEHFNNVSIKSITIPYCQRVINKWND 124

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT----EGIRPWTKEDMQQFKS 184
                         +F++AV  + +  NP    ++P++K     +    ++++++Q F S
Sbjct: 125 KYKDMKAIRIYTSNVFEYAVNLKIITENPFKHTKQPRKKETPQEDSYVYYSRDELQTFLS 184

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT--------------- 229
           F  +       F  L ++G R  +        +     +I   KT               
Sbjct: 185 FVEDNLVDYAIFRTLAFTGFRRGELMALTWNDINFEKKTITINKTCARGNNYKPIIQPPK 244

Query: 230 --GTIITVELPDGFMKLLAMTPIGKET---------------FFIN-NDKQKMNATQFSI 271
              +  T+ + D  + +L    + + T                F N +  +++     + 
Sbjct: 245 TKSSYRTISVDDKTLSILKQWKVQQRTESLKFGHNALKKDQFVFTNVSTNKRLYPEYCNK 304

Query: 272 WFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRI 329
                  K    +   HG R    ++  +AG T  E+    G   +    + Y    ++ 
Sbjct: 305 VLANVCKKHNFKQIKLHGFRHVHCSLLFEAGLTIQEVQDRLGHGDIKTTMDIYAHVTEKQ 364

Query: 330 RLGIKNSRRISSVVD 344
           R   + + + ++ ++
Sbjct: 365 R--DQVAEKFANYIN 377


>gi|323170882|gb|EFZ56532.1| integrase [Escherichia coli LT-68]
          Length = 253

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 44/249 (17%), Positives = 82/249 (32%), Gaps = 15/249 (6%)

Query: 93  ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--TPSSAIQFLTSMRVLFKWAVRQ 150
                    I    G    + I  + + S +E R      + A Q+   +  +FK A+  
Sbjct: 2   KRHNQRLKIISEYFGGVPVKNIGIREVYSFLEIRAAGSKFAIANQYRALLSDIFKTAIAS 61

Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210
                +P  +    + + +  R    E +   K    +     L  +  L +G R  D  
Sbjct: 62  GLAEEDPASATRPFRTEVKRSRLLIDEYLLIRKIADVQNEWFGLCMDLALVTGQREGDLA 121

Query: 211 RAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK-----QKMN 265
               + +++    ++ QKTG  I + LP    +L        +     N K         
Sbjct: 122 AMRWEDIRDGRLYVEQQKTGAKIRISLPTTISRLNLTLADVLDNLKKINGKNEKLLGGKT 181

Query: 266 ATQFSIWFKAKATKAGVNK-----SAHGVRKFSAT-ISADAGATAHELMATYGWKTVDQA 319
           A   +  F+     +G+         H +R  S    SA+ G+   +  A  G ++    
Sbjct: 182 ARTIAAQFRIARDTSGLKWEGDPPPFHEIRSLSGRLHSAEKGSDFTQ--ALLGHRSSSMT 239

Query: 320 ETYTKGADR 328
           + Y  G  R
Sbjct: 240 DKYRDGRGR 248


>gi|189346148|ref|YP_001942677.1| integrase family protein [Chlorobium limicola DSM 245]
 gi|189340295|gb|ACD89698.1| integrase family protein [Chlorobium limicola DSM 245]
          Length = 337

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 45/297 (15%), Positives = 87/297 (29%), Gaps = 51/297 (17%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQ----IIRKSGDFDYRKITT--------KHIRSGVE 124
           +Y KS    +++ ++  ++ +  DQ    I    G  D R            +     + 
Sbjct: 26  DYLKSQ--KNVSSHTLTAYRNDLDQFSIFIASHLGIGDMRNFLPEQLAVVDVRLYMGYLL 83

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
                P S  + L +++  +++      +  +    V  PK         T++  ++   
Sbjct: 84  KNGLQPKSIARKLATLKSFYRYLQHIGIIRTSVLAYVTTPKYPRTVPGFLTEQQTEKLFG 143

Query: 185 FWSEGS-------------------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225
               GS                   + R   E L   GLR S+     + +L      +K
Sbjct: 144 EVLSGSSADASRSGAQDIQEQFELERDRALLEVLYSCGLRISELTGLEMHNLSLENGYVK 203

Query: 226 -TQKTGTIITVELP----DGFMKL-----------LAMTPIGKETFFINNDKQKMNATQF 269
            T K      V L     +   K            L          F+    +K+     
Sbjct: 204 ITGKGNKQRIVPLGSCAVEALKKYFEVRRNFFRIFLKGDAGALAHVFVTKKGKKIYPMLV 263

Query: 270 SIWFKAK--ATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
               +           ++ H +R   AT   ++GA    +    G  ++   E YT 
Sbjct: 264 QRITRKYLTPVTEQKERNPHILRHSFATHLLNSGADLKSVSEMLGHSSLTTTEIYTH 320


>gi|312193924|ref|YP_004013985.1| integrase family protein [Frankia sp. EuI1c]
 gi|311225260|gb|ADP78115.1| integrase family protein [Frankia sp. EuI1c]
          Length = 397

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 59/353 (16%), Positives = 107/353 (30%), Gaps = 45/353 (12%)

Query: 26  RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG 85
                RR R  Y          M+AL  +  K + +     KP T+   +S +       
Sbjct: 45  WIDGKRRRRTVYGRTQKEARGKMNALREAAGKGQDLA---AKPQTVAEWLSYWLDEIKGH 101

Query: 86  S-LAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH--TPSSAIQFLTSMR 141
                ++   +    D  I+   G     K++   +R    +R+    P+S  +    +R
Sbjct: 102 DGTRPSTLSRYRYAIDGHIVPVLGKIRLDKLSPADVRRLHAARRDSMKPASLAKIHAVLR 161

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201
           V    A R + V+ N   SV+ PK      R    ED ++F    + G +    F   L 
Sbjct: 162 VALADAERMDLVSRNVAKSVQPPKLGDSDPRDLAVEDARRFLEV-AAGDRLEALFVVALT 220

Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKTQKT----------------GTIITVELP-DGFMKL 244
            GLR  +        +  +  +++  ++                G+   V +P      L
Sbjct: 221 MGLRRGELLGLRWDDVDLDAATLRVVRSAQRVSGTLRLVDTKTRGSRRPVPIPAMTLEAL 280

Query: 245 LAMTPIGKE-------------TFFINNDKQ---KMNATQFSIWFKAKATKAGVNKSAHG 288
                   +               F +         N T+     + +          H 
Sbjct: 281 KRHRKRQDQERADAGKAWKENGLVFASTVGTLIEPRNVTRRVQQLRGRVNL--PTLRLHD 338

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGA-DRIRLGIKNSRRI 339
            R   A+    AG     +M   G  T+    E Y     +R+R       ++
Sbjct: 339 FRHACASFLLAAGIEPRTVMEILGHATMRMTMERYGHALPERLRAASDAMDKL 391


>gi|332038023|gb|EGI74471.1| integron integrase IntI4 [Pseudoalteromonas haloplanktis ANT/505]
          Length = 320

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 45/298 (15%), Positives = 87/298 (29%), Gaps = 59/298 (19%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT----PSSAIQFLTSM 140
              A ++  ++  +    IR +       +    +   +    +     P++  Q L ++
Sbjct: 16  KRYAKSTVKAYLYWIASFIRFNSMRHPTTMGDNEVELFLNHLVNQQNVAPNTQAQALNAL 75

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200
             LFK  +++        L   + KR T+     T++++  F    S   +  L    L 
Sbjct: 76  SFLFKEVIKKPLSL---SLGFIKSKRATKLPVVLTQQEINNFFKVCSA--KHYLPCGLLY 130

Query: 201 YSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFIN 258
            SG+R  +  R  +  +  +     I   K G    V L       L       +++   
Sbjct: 131 GSGMRLMEVLRLRIHDIDFDYNCIRIWDGKGGKNRVVTLAVELTPQLRSQIQLVDSYLQL 190

Query: 259 NDKQKMNA----------------------------------------------TQFSIW 272
           + K  + +                                               Q    
Sbjct: 191 DLKNPLYSGAYMPHLLRKKYPNHNRQLGWQYLFSSHKLSIDPESKQLRRHHIDEKQLQRA 250

Query: 273 FKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
            K  A  A +NK  + H +R   AT    +GA    +    G   V   + YT    +
Sbjct: 251 VKKAAFDAHINKHVTPHTLRHSFATHLLQSGADIRTVQTQLGHSDVRTTQIYTHVLQQ 308


>gi|325912538|ref|ZP_08174926.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners UPII 60-B]
 gi|325478159|gb|EGC81283.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners UPII 60-B]
          Length = 329

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/248 (14%), Positives = 77/248 (31%), Gaps = 14/248 (5%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS----AIQFLTSMRVL 143
           +  S   + +  + +  K    + R++ T  +R+ +   +H  +S           +   
Sbjct: 68  SEKSLTYYRATIEVMTTKI-KKNVREMETDDLRTYLTEYQHEKNSSKVTVDNIRRILSSF 126

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203
           F W   + Y+  +P   + + K        +T E +++ +    E  +     + L  +G
Sbjct: 127 FSWLEDENYILKSPARRIHKVKAALTIKETYTDEALEKMRDSCEEP-RDLALIDILASTG 185

Query: 204 LRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG-----FMKLLAMTPIGKETFFIN 258
           +R  +        +            G+   +   D       +  L          F++
Sbjct: 186 MRVGELVLLNRDDINFEERECVVFGKGSKERMVYFDARTKIHLLTYLQGRTDDNPALFVS 245

Query: 259 NDKQKMNAT--QFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKT 315
                            +    K  + K   H  R+  AT++ D G    +L    G K 
Sbjct: 246 LRAPHERLKIGGVECRLRELGNKLDIEKVHPHKFRRTLATMAIDKGMPIEQLQQLLGHKR 305

Query: 316 VDQAETYT 323
           +D    Y 
Sbjct: 306 IDTTLQYA 313


>gi|260577357|ref|ZP_05845328.1| integrase family protein [Rhodobacter sp. SW2]
 gi|259020430|gb|EEW23755.1| integrase family protein [Rhodobacter sp. SW2]
          Length = 367

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 40/268 (14%), Positives = 81/268 (30%), Gaps = 30/268 (11%)

Query: 85  GSLAVNSRISF----ESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS---AIQFL 137
             +  ++   +      +    +   GD    ++T +H+    +       S     + L
Sbjct: 82  RRMERSTLRGYSDYVRLHLTAPVVGIGDKLIAQLTRRHVNELRDRLLLNGRSEHLTRRAL 141

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW--TKEDMQQFKSFWSEGSQPRLA 195
           + ++++   A+    +  N    V   K      +    +KE ++       E  +P L 
Sbjct: 142 SVLKLILDHAIDNGQLFTNAAQGVRVIKSSRIEHKAPVPSKEAIRALIEAADEDFKPHLI 201

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ------------KTGTIITVELPDGF 241
              L   GLR S+      Q +        I+ +            + G       P   
Sbjct: 202 VSAL--GGLRASELRGLRWQDVDFDKGFLHIRQRADAYNQMGEPKSRAGFRDIPAGPMVL 259

Query: 242 MKL----LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATIS 297
             L    L          F       +  T+    F+    K  V    H +R F+ ++ 
Sbjct: 260 NALRRWKLRCPKSELGLVFPAPQGGILQHTRTQDRFRKLLEKVEVTMRWHDLRHFAVSLW 319

Query: 298 ADAGATAHELMATYGWKTVDQA-ETYTK 324
            + G +  E+M   G  ++    E Y  
Sbjct: 320 IEQGFSIKEIMTFAGHSSIQMTMERYGH 347


>gi|46198973|ref|YP_004640.1| transposase [Thermus thermophilus HB27]
 gi|46196597|gb|AAS81013.1| transposase [Thermus thermophilus HB27]
          Length = 391

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 47/312 (15%), Positives = 95/312 (30%), Gaps = 41/312 (13%)

Query: 49  SALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII----- 103
            AL      +           T +    +Y K      L  NS           +     
Sbjct: 49  RALADMVAAQAKGLLTDPSRLTTRDFALDYLKRLEREGLRPNSIRLAREELAHALPSLKD 108

Query: 104 ----RKSGDFDYRKITTKHIRSGVESRKHT---PSSAIQFLTSMRVLFKWAVRQEYVAIN 156
                  G    +++   H+R+ V+        P +  + L  ++ LF+ A+R E VA N
Sbjct: 109 PKAHDPLGRMRLQEVKPVHVRAAVDRVAEAGYAPRTVNRVLMRLKALFREALRLELVARN 168

Query: 157 PCLSVE-RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE--FLLYSGLRCSDSCRAG 213
           P  +V  R  +  +  R     ++ +            +A     +L +GLR  ++    
Sbjct: 169 PAEAVRLRLPKGEKTARALEPHEVARLLEAAEASRSKDMALLLRLMLETGLRRGEALALQ 228

Query: 214 VQHLQNN------IFSIKTQKTGTIITVELPDGFMK-------------------LLAMT 248
            + +           S        + +        +                   L  +T
Sbjct: 229 WRDIDLEAGELTVWRSWTKAGGKGVFSEPKTPTAKRKVPLPRGLLLRLKARREELLERLT 288

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHEL 307
           P   +  F+    + ++   F+ + +  A KAG+ +   H +R   AT++   G     +
Sbjct: 289 PEEVDGLFLVGGVKPVDPDAFNHYLRRLAEKAGLGRVRVHDLRHTWATLALSRGVPLEVV 348

Query: 308 MATYGWKTVDQA 319
               G  +    
Sbjct: 349 SERLGHASPTIT 360


>gi|304383194|ref|ZP_07365667.1| phage integrase family site-specific recombinase [Prevotella
           marshii DSM 16973]
 gi|304335665|gb|EFM01922.1| phage integrase family site-specific recombinase [Prevotella
           marshii DSM 16973]
          Length = 285

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 40/283 (14%), Positives = 94/283 (33%), Gaps = 27/283 (9%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132
            +++ ++K     +LA N+  S+    +       + + + +       G       P +
Sbjct: 18  NMVTTFQKHLAKTNLAPNTITSYVWTVNYFFEHYKEVNKKNLLA---YKGFLVENFKPQT 74

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI--RPWTKEDMQQFKSFWSEGS 190
               L ++    +++ +++         V+  K + +       +  D +  K+      
Sbjct: 75  VNLRLQAINKFLEYSKQEKL-------KVKFVKVQQKNFLENVISDADYKFLKTKLKADG 127

Query: 191 QPRLAFEF--LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM----KL 244
                F    +  +G R S+  +   +H+Q     +   K G I  + +P        K 
Sbjct: 128 FDEWYFTIWFMAATGARVSELLQIKAEHVQVGYLDLY-SKGGKIRRLYIPKNLRTEANKW 186

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAG 301
           +    +     F+N    ++     +   K  A K G+N+     H  R   A    D  
Sbjct: 187 IKERGLSSGYIFLNRFGNRITTRGIAQQLKHFAEKYGINRDVVYPHSFRHRFAKNFLDRF 246

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
                L    G ++++    Y +     R   +  + +  VV+
Sbjct: 247 NDLALLADLMGHESIETTRIYLR-----RTASEQQKIVDKVVN 284


>gi|241895011|ref|ZP_04782307.1| integrase [Weissella paramesenteroides ATCC 33313]
 gi|241871729|gb|EER75480.1| integrase [Weissella paramesenteroides ATCC 33313]
          Length = 309

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 40/281 (14%), Positives = 96/281 (34%), Gaps = 37/281 (13%)

Query: 74  LISEYRKSAHWGSLAVN------SRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127
           L  EY     W +L         +   ++    Q+ +   D     +  +  ++ + +  
Sbjct: 8   LFHEYYL--QWMTLYKEGAVRQITYAKYQQTHKQLRKLVPDLCLCDLNRQVYQALLNTYA 65

Query: 128 HT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV--ERPKRKTEGIRPWTKEDMQQFK 183
            T    + + F   ++     A+    + ++P   +  +    +   I+   ++ + +  
Sbjct: 66  ETHEKQTVLDFHHQVKSGILDALEDGLLTVDPTRKIVIKGTITQHHKIKYLNQQQLTKLL 125

Query: 184 SFWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSIKTQKT------------ 229
           +  + G +  + + FLL   +GLR S++          +  ++   KT            
Sbjct: 126 AQLNLGEELSIDYFFLLVAKTGLRFSEALGITPDDFDLSRLTLSVNKTWDYKSNEGSFSP 185

Query: 230 --------GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281
                      I  ++   F +L+   P  +  F  N   +K      +        KAG
Sbjct: 186 TKNTASMRKVPIDWQIAMQFAQLVKDLPKNQPIFITN--GKKFYNETANDKLARYCQKAG 243

Query: 282 VNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
           + + S HG+R   A++   AG +   +    G   ++  + 
Sbjct: 244 IPEISVHGLRHTHASLLLYAGVSIASVAQRLGHSNMNTTQR 284


>gi|110597063|ref|ZP_01385352.1| Phage integrase:Phage integrase, N-terminal SAM-like [Chlorobium
           ferrooxidans DSM 13031]
 gi|110341254|gb|EAT59719.1| Phage integrase:Phage integrase, N-terminal SAM-like [Chlorobium
           ferrooxidans DSM 13031]
          Length = 336

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 43/296 (14%), Positives = 90/296 (30%), Gaps = 50/296 (16%)

Query: 85  GSLAVNSRISFESYFDQI---------IRKSGDFDYRKITTKHIRSGVES---RKHTPSS 132
            +L+ N+  ++     Q          +     F   ++    +R  + +   R   P S
Sbjct: 31  KNLSPNTLKAYRGDLIQYFSFLLHHFRLDDLNGFALEQVKAVDVRLFMGALIERGVKPRS 90

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-FKSFWSEG-- 189
             + L S++  +++      +  +    +  P+         T++  ++ F    S G  
Sbjct: 91  IARKLASVKSFYRYQQETGKITGSLFSFIATPRYPKRVPAFLTEQQTEKLFNEELSSGRA 150

Query: 190 ----------------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTI 232
                            + R   E L   GLR S+        L  +   +K T K    
Sbjct: 151 PFRQSEKSPIEEEFVSERDRSILELLYSCGLRVSELTGLTTDRLDLDGGYVKLTGKGRKQ 210

Query: 233 ITVELPDGFMKLLAMTPIGKETFF---------------INNDKQKMNATQFSIWFKAK- 276
             V +    ++ L      +  FF               +    +++         +   
Sbjct: 211 RIVPVGGAALQALKKYFEVRRNFFRISLKGRAESINYVFVTKKGKQLYPMLVQRLTRKYL 270

Query: 277 -ATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330
            +      K+ H +R   AT   ++GA    +    G   +   E YT    DR++
Sbjct: 271 VSVTEQKQKNPHILRHSFATHLLNSGADLTSVSEMLGHSNLSTTEIYTHVTFDRLK 326


>gi|15838879|ref|NP_299567.1| phage-related integrase [Xylella fastidiosa 9a5c]
 gi|9107449|gb|AAF85087.1|AE004040_12 phage-related integrase [Xylella fastidiosa 9a5c]
          Length = 353

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/240 (15%), Positives = 77/240 (32%), Gaps = 19/240 (7%)

Query: 8   PPFVTKERTRHGKIIY---YF--RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62
           P  + + R      ++   Y+  R   GRR+ +P   +        + L       E   
Sbjct: 12  PKMLRRTRVLKSGKVWESFYYNGRTTEGRRVEIPLGGDLNEAKRQWAELECCKAPVETEV 71

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122
                   L ++   Y +     + A  +R   +S    + +  GD +   +T + +   
Sbjct: 72  --------LGFIFDRYLREVA-PTKARATRYQIKSCMTTLRKVFGDVNIHTVTPQQLAQY 122

Query: 123 VESRKHT-PSSAIQFLTSMRVLFKWAVRQEYVAI-NPCLSVERPKRKTEGIRPWTKEDMQ 180
            + R  T P  A + L+    ++  A    Y    N    + + K K             
Sbjct: 123 RDKRARTAPVLANRELSVFSSVWTMAREWGYTNKENQVKGIRKIKEKPRDFYA-DAAVWN 181

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
              +   E  +   A +    +G R +D  +     +++    ++  KT   + + L   
Sbjct: 182 AVYAKACEELKD--AMDLAYLTGQRPADVLKMRFTDIRDGSLEVQQNKTKKKLRILLESE 239


>gi|329889464|ref|ZP_08267807.1| putative prophage CP4-6 integrase [Brevundimonas diminuta ATCC
           11568]
 gi|328844765|gb|EGF94329.1| putative prophage CP4-6 integrase [Brevundimonas diminuta ATCC
           11568]
          Length = 427

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 59/336 (17%), Positives = 111/336 (33%), Gaps = 47/336 (13%)

Query: 37  YPHESTFIPAYMSALTGSTPKREYINSPRKKPT---TLKWLISEYRKSAHWGSLAVNSRI 93
           YP +     A  S L G     +  ++ +       TL  +   Y      G L  ++R 
Sbjct: 63  YPEDKARKRA-QSILQGMREGIDPRDAKKADEAMRVTLGEVCEAYVSRP--GRLKASTRT 119

Query: 94  SFESYFDQIIRKSGDFDYRKITTKHIRS--------GVESRKHTPSSAIQFLTSMRVLFK 145
            ++ + D++     D    +IT   +R         G++ +K  P+SA   + ++R+L  
Sbjct: 120 EYKRHVDKVFAAWKDKPIVQITEDDVRKRHRALVEGGLDGKKGAPASANAAMVTLRILLN 179

Query: 146 WA---VRQE----YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF-- 196
           +A    R+      +  NP   V +      G R     D ++    W+  ++ R     
Sbjct: 180 FAGRQYRRGDGTPLIQRNPVE-VLKDHWAPMGSRTDRYIDRRRIGEVWNALNRARTDAKD 238

Query: 197 ----------EFLLYSGLRCSDSCRAGVQHLQNN-------IFSIKTQKTGTIITVELPD 239
                      FLL +G R  +        +  +        + +  +K G  + + L  
Sbjct: 239 HHALASIDLTLFLLLTGARRDEGATLTWDRVNIDDEDPSNCWWHLDERKRGEPLWLPLSS 298

Query: 240 GFMKLLAMTPI--GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATIS 297
             + +L   P        F +  K        +   +  +  AG + S H +R+   T  
Sbjct: 299 QAVAVLKGRPRSNDNPHVFPSWSKTGHVTEARAPM-ELVSAVAGKHLSLHDLRRTF-TNI 356

Query: 298 ADAGATAHELMA--TYGWKTVDQAETYTKGADRIRL 331
           A       +       G K   +  T     D  RL
Sbjct: 357 AMRECLIEKFRTDLLTGHKPAQEDVTARNYLDLARL 392


>gi|317481199|ref|ZP_07940273.1| phage integrase [Bacteroides sp. 4_1_36]
 gi|316902634|gb|EFV24514.1| phage integrase [Bacteroides sp. 4_1_36]
          Length = 396

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 48/277 (17%), Positives = 100/277 (36%), Gaps = 30/277 (10%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVESRKHT 129
             I  +R+     +L  +++ +  S    + +   D  +  +T          ++SR + 
Sbjct: 106 AFIPFFRQEIANSTLKESTKRNHLSTLSLLQQFKKDVTFSDLTFEFISSFEYFLQSRGYH 165

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINP-CLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
            ++  + +  ++     A+ ++Y+ I        + K         + E++++ +     
Sbjct: 166 TNTIAKHMKHLKRHINVAINKDYMEIQKYAFRKYKIKTIENKHTHLSPEELEKLEKLSLA 225

Query: 189 GSQPRL-----AFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPD 239
           G   +L     AF F  Y+G+R SD       ++    Q      K+ KT T + + L  
Sbjct: 226 GRYTKLQKTLDAFLFCCYAGMRYSDFISLSPDNIVEIRQETWLIYKSIKTSTEVRLPL-- 283

Query: 240 GFMKLLAMTPIGKETFFINNDK----QKMNATQFSIWFKA---KATKAGVNK--SAHGVR 290
                  +   GK    ++  +       +    S   K     +  AG++K  S H  R
Sbjct: 284 ------YLLFEGKGLVILDKYRDDLQSFFHLRDNSNVNKDLIVISRLAGLSKKISFHTAR 337

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
             +AT+    G     +    G K+V   + YT   D
Sbjct: 338 HTNATLLIYNGVNITTVQKLLGHKSVKTTQVYTNVMD 374


>gi|313676056|ref|YP_004054052.1| integrase family protein [Marivirga tractuosa DSM 4126]
 gi|312942754|gb|ADR21944.1| integrase family protein [Marivirga tractuosa DSM 4126]
          Length = 286

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 43/271 (15%), Positives = 91/271 (33%), Gaps = 22/271 (8%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKHTPSSA 133
              R+S      + ++  ++      +         +            ++S++ TPS +
Sbjct: 9   KRLRRSIDIAGKSQSTLTNYGRCLAHMGLYFECDLLELDDEQILDYLYMLKSKRKTPSDS 68

Query: 134 --IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
             +  +  +R L++   ++E   I P   +ER K         ++++++           
Sbjct: 69  FFMHTVYGLRYLYRIFEQRESRVILPS--IERQKA---LPVVLSQQEVRLLLKTPKLLKH 123

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAM-T 248
            RL    L   GLR  + C   + HL        ++  K      V L D  ++ +    
Sbjct: 124 -RLMMALLYGCGLRNFELCNLKIVHLDLERKQLHVQQGKGRKDRYVPLCDLLVRGVNTYL 182

Query: 249 PIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
              K T ++ N +        +++        +    ++G+ K  +AH +R   AT   +
Sbjct: 183 QAEKPTEYLFNGQPDEDGGHTQLSTRGVQWVMRQARQQSGIKKQITAHTLRHSYATHLLE 242

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIR 330
            G     L    G   +     Y   A   R
Sbjct: 243 MGTDIMTLKDLLGHGDIQTTLGYLHVARVGR 273


>gi|297625638|ref|YP_003687401.1| phage integrase [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
 gi|296921403|emb|CBL55956.1| phage integrase [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
          Length = 382

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 54/319 (16%), Positives = 98/319 (30%), Gaps = 41/319 (12%)

Query: 48  MSALTGSTPKREYINSPRKKPTTLKWLIS---EYRKSAHWGSLAVNSRISFESYFD-QII 103
              ++    +   + + + +  T+   IS   E R +     LA  +   +   +  +I 
Sbjct: 50  QDLISRDVWEAPEVRTAKPRALTVGEWISKVIERRANRTRRPLAQTTIDLYRKDYRLRIS 109

Query: 104 RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163
                     +T   + +   +   TP+   +    +R     A+  E +  +PC    R
Sbjct: 110 ETLCAVRLADLTPAMVATWWHALPDTPTQNARAYALLRSAMSDAMEDELIERDPC----R 165

Query: 164 PKRKTEGIRPWTKEDM---QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-- 218
            K   +     T E +   + F    +     RL        GLR  +      + +   
Sbjct: 166 LKEAGKPTPAHTGEAITVPELFTYLEAVPESRRLPLMIAALCGLRSGEVRGLRRRDVDLK 225

Query: 219 NNIFSIKTQ------------------KTGTIITV-----ELPDGFMKLLAMTPI---GK 252
             +  ++                    KT   +        + D     L   P+     
Sbjct: 226 AGMLHVEQAVSRVRADNHRWEWRIAPPKTAAGVRTVALPSPVTDALRTWLKEAPVNGWDG 285

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATY 311
             F   +    M  T             G    + H +R+ +AT++A  GAT  ELM   
Sbjct: 286 LLFPATDGHSPMPGTVLRDAHVKGREAIGRQTLTIHDLRRTAATLAAQGGATTKELMRLL 345

Query: 312 GWKTVDQAETYTKGADRIR 330
           G  TV  A  Y + AD  R
Sbjct: 346 GHTTVSVAMLY-QVADEER 363


>gi|297208820|ref|ZP_06925236.1| integrase [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|296886545|gb|EFH25462.1| integrase [Staphylococcus aureus subsp. aureus ATCC 51811]
          Length = 276

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 37/255 (14%), Positives = 91/255 (35%), Gaps = 18/255 (7%)

Query: 87  LAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRSGVE--SRKHTPSSAIQFLTSMRVL 143
           +  N+   + +    I + K G  +  KI  +  +  +   S++H   +  +   ++R  
Sbjct: 3   VKENTYRHYRNALQHIQKHKIGKMELSKINRQVYQKFINDYSKEHAKETIRKTNGAIRSA 62

Query: 144 FKWAVRQEYVAINPCLSV-----ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEF 198
              A+    +  NP   V     +  K + E     T+ ++ +      + ++  LA   
Sbjct: 63  LDDALYDGLIFKNPAYKVNYKAGKPTKSEQEKFISVTEYEILK-DHVRKKRTRSSLALFI 121

Query: 199 LLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTG-TIITVELPDG----FMKLLAMTPIG 251
           ++ +G R S +    ++H+    N   I  +KT  +   + +        M +++   I 
Sbjct: 122 MICTGCRVSGARNIKIEHINQVKNAIFIDERKTDTSPRYISIAKSDMKHIMDVISTFAIS 181

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMAT 310
            + +        +N    +   K+      +   ++H +R    +     G + H +   
Sbjct: 182 YDGYIFKEAGSIINLQAINNALKSACRVNNIPIITSHALRHTHCSYLLAKGVSIHYISKR 241

Query: 311 YGWKTVD-QAETYTK 324
            G K +      Y+ 
Sbjct: 242 LGHKNIAITTSVYSH 256


>gi|221196186|ref|ZP_03569233.1| integrase [Burkholderia multivorans CGD2M]
 gi|221202860|ref|ZP_03575879.1| integrase [Burkholderia multivorans CGD2]
 gi|221176794|gb|EEE09222.1| integrase [Burkholderia multivorans CGD2]
 gi|221182740|gb|EEE15140.1| integrase [Burkholderia multivorans CGD2M]
          Length = 375

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 56/366 (15%), Positives = 115/366 (31%), Gaps = 50/366 (13%)

Query: 3   PSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62
           P   LPP + +++       ++FR    +       ++   I    +A      +R   +
Sbjct: 9   PKRLLPPNLYQKKDG----YFWFRNPITKETFGLGRNKEAAISQAKTANADIERRRGDTS 64

Query: 63  SPRKKPTT---LKWLISEYRKSAHWGSLAVNSRISFESYFDQII-RKSGDFDYRKITTKH 118
              +       L      Y +S     L  N+  S  S    I   + G      IT + 
Sbjct: 65  LLARMDGGDNLLSKWCDVYEESLA--GLKPNTMKSIRSQLTAIRGDEIGKMILIHITPRD 122

Query: 119 IRSGVESRKHTPSS--AIQFLTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPW 174
           + S +E  +    +  A +  + +R + + A+ +  +    NP     +PK   +  R  
Sbjct: 123 VVSFIERCEAERGAPMASKIRSRLRDVLRAAMERGAIEVGKNPVEVTYKPKAVVKRSR-L 181

Query: 175 TKEDMQQFKSFWSEGSQPR---LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
           T +  +   +        +    A E  L +G R  D CR    ++ +    ++  K   
Sbjct: 182 TLDTYRAILAEAKSHKHRQWVANAIELALVTGQRLEDICRMTFDNVHDGFLWVEQTKGRG 241

Query: 232 ----IITVELPDGFMKLLAMTP----------IGKETFFIN------NDKQKMNATQFSI 271
                + + L                      + K     +           +     S 
Sbjct: 242 TNRPKLCIPLSLSLPAAGLTLDDVVKRCRDRVVSKHLIHFSHAISKGKPGSAVAPGTLSQ 301

Query: 272 WFKAKATKAGV-------NKSAHGVRKFSATISADA-GATAHELMATYGWKTVDQAETY- 322
            FK     +G+         + H +R  +A + ++A G    +  +  G K+      Y 
Sbjct: 302 AFKVARNSSGIVTEKDRTPPTFHELRSLAARLYSEAYGKDFAQ--SLLGHKSEAMTAVYR 359

Query: 323 -TKGAD 327
            ++G D
Sbjct: 360 DSRGQD 365


>gi|302537984|ref|ZP_07290326.1| predicted protein [Streptomyces sp. C]
 gi|302446879|gb|EFL18695.1| predicted protein [Streptomyces sp. C]
          Length = 369

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 49/289 (16%), Positives = 95/289 (32%), Gaps = 37/289 (12%)

Query: 87  LAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLTSMRV 142
           L   +   +  Y  + ++   G     ++  +HI + V    +     ++  + L ++  
Sbjct: 8   LKPTTMARYRDYVRNDLVPAFGTLKLDQLAHRHISAFVTCQLAAGRGRTTLYRCLATLSS 67

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA-FEFLLY 201
               AVRQ  +  NP       +      R WT ++  +F ++  +        FEFL+ 
Sbjct: 68  ALGDAVRQHRLPHNPASPPVLRRPPAPERRIWTAQEAARFLTYCHQADPDMADLFEFLIG 127

Query: 202 SGLRCSDSCRAGVQH----------------LQNNIFSIKTQKT-GTIITVELPDGFMKL 244
           +G+R  ++                       + NN   I   KT  +   V +       
Sbjct: 128 TGMRKGEALGLHWDDVYLGEAVLYVRCTLSAIDNNRLVITAPKTRSSRGWVAISPRVATA 187

Query: 245 LA-----MTPIGKE-------TFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRK 291
           L        P   +         F  +D + +   Q        + +AGV + + H +R 
Sbjct: 188 LRHHARTTRPTRGDPDDPFAGLVFCRSDGRPLGPHQVLDRLHELSEEAGVPRITVHDLRH 247

Query: 292 FSATISADAGATAHELMATYGWKTVDQAE-TYTK-GADRIRLGIKNSRR 338
            +ATI+  AG     +  T    T+      Y+       R  +    R
Sbjct: 248 LAATITISAGVPLTVVSKTLRHSTLSTTANIYSHLTRQAAREAVDTIDR 296


>gi|260868890|ref|YP_003235292.1| putative integrase [Escherichia coli O111:H- str. 11128]
 gi|257765246|dbj|BAI36741.1| putative integrase [Escherichia coli O111:H- str. 11128]
          Length = 413

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 54/333 (16%), Positives = 116/333 (34%), Gaps = 33/333 (9%)

Query: 24  YFRKGHGRRIRLPYP--HESTFIPA------YMSALTGSTPKREYINSPRKKPT-----T 70
           Y+R    +RI L +    + +   A      Y + +   T  +++    R+        T
Sbjct: 47  YYRPSDKKRILLSFGSLDDVSLADARKRRSEYRALIRAGTDPQDHERQKRETEARRQGNT 106

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHT 129
            + + + + +     +LA N+        +  +    G+     +T +     +   K  
Sbjct: 107 FENVATAWYQVKISQNLAPNTIKDIWRSLEKYVFPFIGNTPIDTLTARRFVEVLTPIKER 166

Query: 130 PS--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVER-----PKRKTEGIRPWTKEDMQQF 182
            +  +  + L  +  +  +A     +  NP ++V +      K+    IRP    ++ Q 
Sbjct: 167 GNLETLKRVLQRVNEVMDYAANSGMIDANPAMNVRKAFPSPVKKHMPTIRPEQLPELMQA 226

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIITVELP 238
            S  +   Q RL  E+ L +  R  ++  A  + +              K      + L 
Sbjct: 227 LSVSATERQTRLLIEWQLLTVTRPVEASSARWEEIDMEAQRWTIPAGRMKMRRDHVIPLC 286

Query: 239 DGFMKLLAMTPI---GKETFF--INNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFS 293
           D  M +L         ++  F  + + +Q MN+   +   +     AGV  S HG+R   
Sbjct: 287 DQAMAVLEAMKPISHHRDYVFPSLKDPRQPMNSQTANAALRRMGF-AGVLVS-HGLRAIF 344

Query: 294 ATISADAGATAHELMATYGWKTVDQAET-YTKG 325
           +T + + G     + A       ++    Y + 
Sbjct: 345 STAANEEGFEPDVIEAALAHVDTNEVRRAYNRS 377


>gi|254247554|ref|ZP_04940875.1| Phage integrase [Burkholderia cenocepacia PC184]
 gi|124872330|gb|EAY64046.1| Phage integrase [Burkholderia cenocepacia PC184]
          Length = 508

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 57/330 (17%), Positives = 112/330 (33%), Gaps = 25/330 (7%)

Query: 7   LPPFVTKERTRHGKII-YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
           LP  V   R   GK+  Y F+    R  R     E+    A   A       R +     
Sbjct: 143 LPMNVHLFRV--GKVWHYRFQINGTRAQR--STRETVKHRAEAVAERAYRQARLWARGDA 198

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRS 121
             P TL+ L+ E+  +      ++ SR  +    D   R       D    ++TT  + +
Sbjct: 199 PVP-TLRELVQEWLAAHE----SIRSRA-YIRNVDTFGRLHLYGLADVMVDELTTPLVET 252

Query: 122 GV--ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
            +    R H  +S   +L  ++V+ KWAVR++ +   P  SV+  K + +         +
Sbjct: 253 AMLAHRRAHAAASVNHWLNLLKVVCKWAVRRKVMPEIP-WSVKSLKVQKKPRATLPVSRV 311

Query: 180 QQFKSFWSEGSQP----RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ--KTGTII 233
            ++ +   + ++      +A       GLR S+   A    +  +  +      K     
Sbjct: 312 AEWLAAVDDYARDCPGLSIAVRLAFGLGLRESEIITARWDWIDWDRGTYTPGITKGREAD 371

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKF 292
            + + +  +  L            +       +       ++      +N  + H +R  
Sbjct: 372 PIPMTNWLIDYLRARRQPAGLIVSHRHGHAYRSGFLRPVLRSANAVCQLNGITPHRLRGT 431

Query: 293 SATISADAGATAHELMATYGWKTVDQAETY 322
            AT+ ++ GA+   +      K       Y
Sbjct: 432 FATLLSENGASVSTIQRVMRHKDPMTTLRY 461


>gi|326778043|ref|ZP_08237308.1| integrase family protein [Streptomyces cf. griseus XylebKG-1]
 gi|326658376|gb|EGE43222.1| integrase family protein [Streptomyces cf. griseus XylebKG-1]
          Length = 377

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 50/304 (16%), Positives = 93/304 (30%), Gaps = 31/304 (10%)

Query: 48  MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII-RKS 106
             A      +      P +  TT++   + +  +     L   ++ S+ S  + +I    
Sbjct: 49  WLARKRIEMEEGRWVDPAEGKTTVRDWSARWLTAVS-PQLKHKTQASYRSLINSLIVPAL 107

Query: 107 GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL---FKWAVRQEYVAINPCLSVER 163
           GD +   +    I   V + K    SA +   + RVL    + AV  E +   PC  V+ 
Sbjct: 108 GDRELSSLRPITIVEWVGAMKTRGLSASRIRQAYRVLSQIMRAAVDNEMIGQTPCRGVKL 167

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----- 218
           P+         T   ++  +   S      L    L Y+GLR  ++       +      
Sbjct: 168 PRMPQTEPHILTP--LEASRIVGSATKPHDLLISLLAYAGLRVGEAFALRRADIDVSGGL 225

Query: 219 ----------NNIFSIKTQKTGTIITVELPDGFM----KLLAMTPIGKET-FFINNDKQK 263
                     N      T K+     + +         + L   P G++   F+    + 
Sbjct: 226 VLVDENLAEANGTLVFDTPKSHQKRVLRIGPSLAARIGRHLETLPGGEDALLFVTPGGKP 285

Query: 264 MNA-TQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAE 320
           +        +F      AG+ + + H +R    T  AD            G         
Sbjct: 286 LRYNQWRKAYFDPAVVAAGLTDVTPHDLRASHGTWVADRYG-VMTAAHRLGHSNASVTTR 344

Query: 321 TYTK 324
            Y +
Sbjct: 345 HYAR 348


>gi|291546700|emb|CBL19808.1| Site-specific recombinase XerC [Ruminococcus sp. SR1/5]
          Length = 380

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 49/371 (13%), Positives = 113/371 (30%), Gaps = 51/371 (13%)

Query: 22  IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKR-----EYINSPRKKPTTLKWLIS 76
            +  R     RI     +   +   Y  A       R     + +   R K        +
Sbjct: 15  RWEARYIKEHRINGRIHYGYCYGKTYHEARDKVNQARYALMNDQLLPVRGKRNRFADYCN 74

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIR-----KSGDFDYRKITTKHIRSGVESRKHTPS 131
           E+       S+  ++ + + +  ++ I+        +     +  +     +  R  +P 
Sbjct: 75  EWL-YLKRSSVKPSTFVKYTTILEKYIKPDLGQYFSEAVSEILVEQFSYRLIHERGLSPK 133

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINP-CLSVE--RPKRKTEGIRPWTKEDMQQFKSFWSE 188
           +    L+ +  +  +  +Q     NP    V+   P++  + +R  T E+ ++F  +  +
Sbjct: 134 TVRDILSVLHSILNYTTKQ-----NPLAKPVDIVYPRQDRKEMRVLTCEEQKRFTEYLLQ 188

Query: 189 GSQP-RLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIK-------------------- 225
              P +      L +GLR  + C    + +  +N +  ++                    
Sbjct: 189 DMDPCKFGVLLALLTGLRIGEVCALKWEDISLENKVIFVRHTMQRLKNLNPASEERTRII 248

Query: 226 --TQKTGTIITV-ELPDGFMKLLAMTPIGKE--TFFINNDKQKMNATQFSIWFKAKATKA 280
               K+G  + +  +     KL                     +         +      
Sbjct: 249 TGVPKSGRSVRIIPMNQDIEKLCNKWRADDLEAYVLTGKAGYFLEPRTLQYRMRQYTKDC 308

Query: 281 GV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGA-DRIRLGIKNSR 337
            + N   H +R   AT   +AG     L    G  +     E Y   + +  R  ++   
Sbjct: 309 NLKNVHFHTLRHSFATRCVEAGFEIRSLSEILGHSSTRITLECYVHSSMNLKRKNMEKL- 367

Query: 338 RISSVVDSDDP 348
           +I+  V+ + P
Sbjct: 368 KIADTVEKEFP 378


>gi|210617017|ref|ZP_03291352.1| hypothetical protein CLONEX_03574 [Clostridium nexile DSM 1787]
 gi|210149540|gb|EEA80549.1| hypothetical protein CLONEX_03574 [Clostridium nexile DSM 1787]
          Length = 353

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 49/324 (15%), Positives = 104/324 (32%), Gaps = 50/324 (15%)

Query: 39  HESTFIPAYMSALTGSTPKREYINSPRKKPTT------LKWLISEYRKSAHWGSLA---- 88
             + F+  Y +   G+  +++     R+K         L  L  +Y     +GS++    
Sbjct: 15  TGTWFVKCYYTDYMGNKKQKKKRGFARQKDAKEWEYSFLSSL--QYDSDTTFGSVSNDFI 72

Query: 89  --------VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS---AIQFL 137
                     +  S+      I+    D    +I  K I        +T  S     +  
Sbjct: 73  EENTPRRRKTTIRSYNIALKHILPTFKDIPLSEINEKMIILWQNELLNTELSEVYINKID 132

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERP-KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196
           T  R ++K+  ++  +  NP   +E+  K   + +  WT E    F  +  + +  R+AF
Sbjct: 133 TMFRTIYKYGAKRCGLRSNPFDGIEKIGKASNKSLHFWTHEQYNAFIPYIEQPTT-RMAF 191

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT----------------GTIITVELPDG 240
           + L Y G+R  +        +  +   +   K+                  I  + LP+ 
Sbjct: 192 QVLYYCGIRIGELFALTAGDIDLDEQIMHITKSLQRMERQDVITPPKTRKGIRDITLPNF 251

Query: 241 FMKLLAMTPIGKETFFINNDKQKM----NATQFSIWFKAKATKAGVNK-SAHGVRKFSAT 295
            +K L        +   + + +      +        K  +  A V +   H +R     
Sbjct: 252 LVKELENY----MSMIYDCNGETRLFEISKQSLYYPMKKYSEIARVPRIRIHDIRHSHVA 307

Query: 296 ISADAGATAHELMATYGWKTVDQA 319
           +  + G +   +    G   +   
Sbjct: 308 LLIEKGVSPLAIAERLGHDDIKIT 331


>gi|78358438|ref|YP_389887.1| phage integrase family site specific recombinase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|78220843|gb|ABB40192.1| site-specific recombinase, phage integrase family [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 407

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/284 (11%), Positives = 76/284 (26%), Gaps = 15/284 (5%)

Query: 58  REYINSPRKKPTTLKWLISEYR---KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI 114
           ++   + + +  T      EY    +S          +  +E +   II +         
Sbjct: 113 KQAQQAAKARFITSGSFWHEYYWPSQSHKAQGSLDAEKALWEKWLCPIIGQIPLATTTTK 172

Query: 115 TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAIN-PCLSVERPKRKTEGIRP 173
             + ++  +      P++    L     ++  A          P   ++ P R  +  R 
Sbjct: 173 DLEEVKRRMMKAGRAPATIKYALALFSQMWTLAQNYGIADGTCPAKRLKLPARDNKRQRY 232

Query: 174 WTKEDMQQFK-SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN--IFSIKTQKTG 230
               ++     +   +  +        L  GLR  +      + +        I+  K+ 
Sbjct: 233 LKPAEIDTLLSALRDKSQKTHDIALLSLECGLRFGEIANLRWEDVDLEHERLFIRDPKSR 292

Query: 231 TIITVELPDGFMK--LLAMTPIGKETFFINNDKQKMNA--TQFSIWFKAKATKAGVNKS- 285
                 +        LL       +  F + + + M      F             +   
Sbjct: 293 RNRFTYINQTIRSMLLLNRPDRAGDLIFPDYEGKPMARVSKTFGRVADELFNSDVTDTRN 352

Query: 286 ---AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
               H +R   A+     G   + +    G  ++   E Y   A
Sbjct: 353 RVCFHTLRHTFASRLVANGTPLYNVKELLGHSSLAMTERYAHLA 396


>gi|331006573|ref|ZP_08329863.1| Integrase [gamma proteobacterium IMCC1989]
 gi|330419606|gb|EGG93982.1| Integrase [gamma proteobacterium IMCC1989]
          Length = 328

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 43/317 (13%), Positives = 85/317 (26%), Gaps = 34/317 (10%)

Query: 17  RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76
           R+GK I   R        L       F                  +   +   +L  L+ 
Sbjct: 20  RNGKRIKRIRNTKKECRLLEADILREF--------------ASVPDKFARDNRSLIDLVD 65

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--TPSSAI 134
            +  S    +L    +  +      +  +  +    + T++      + R    + S+  
Sbjct: 66  LWYSSHG-HTLKDA-KYRYSRTL-ALCDRLSNPSVSEFTSEVFSIYRQRRLSDVSVSTVN 122

Query: 135 QFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
                +R +F    R   Y   NP  ++     +   +   T +   +      + S   
Sbjct: 123 HETRYLRSVFNELKRLGFYYGDNPLANIRTFPERQRELSFLTYDQRDELLYQCEQSSNTH 182

Query: 194 LA--FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251
            A      L +G R S++      +L +N       K G    + +       L      
Sbjct: 183 CAPVVRLCLATGSRWSEANGLKASNLFDNRVIYSDTKNGKQRVIPITSKLSSYLRSQA-- 240

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGV----NKSAHGVRKFSATISADAGATAHEL 307
               F  N  +          F+    +  +     +S H +R   A+     G     L
Sbjct: 241 ----FPTNTGRLF--DSCRSAFRKALERTSIELPQGQSTHVLRHTYASHFVMKGGDILTL 294

Query: 308 MATYGWKTVDQAETYTK 324
               G   +     Y  
Sbjct: 295 KNILGHSDLKVTMRYAH 311


>gi|328947971|ref|YP_004365308.1| integrase family protein [Treponema succinifaciens DSM 2489]
 gi|328448295|gb|AEB14011.1| integrase family protein [Treponema succinifaciens DSM 2489]
          Length = 332

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 37/281 (13%), Positives = 89/281 (31%), Gaps = 15/281 (5%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK----HT 129
           L+  +  + H    +  S   ++S   + I       + +I T+ +R  +   +     +
Sbjct: 55  LLENFLAAKHVEGCSERSIKYYKSTLQKAITIL-HKPFNQIETEDLRKYLSDYQKINNAS 113

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
             +       +   F W   + Y+  +P   + + K        ++ E +   +      
Sbjct: 114 RMTIDNVRRILSTFFTWLEDENYILKSPVRRIHKIKTAKLIKETYSDETLVLLRDNCKT- 172

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDG----FMKL 244
           ++     + L  +G+R S+      Q +   N   +   K      V          +  
Sbjct: 173 TRDLAIIDMLASTGMRVSELVTLNKQDVDFVNRECVVFGKGSKERPVYFDARTKIHLLNY 232

Query: 245 LAMTPIGKETFFIN--NDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG 301
           L          F++      ++  +   I  +       + K   H  R+  AT + D G
Sbjct: 233 LNERKDNNPALFVSLLEPHNRLQISGVEITLRKLGRSLNIQKVHPHKFRRTLATQAIDKG 292

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
               ++    G + +D    Y    D+  + + +   +  V
Sbjct: 293 MPIEQVQRLLGHQKIDTTMEYA-MVDQQNVKVSHKNTLVKV 332


>gi|237733524|ref|ZP_04564005.1| integrase [Mollicutes bacterium D7]
 gi|229383357|gb|EEO33448.1| integrase [Coprobacillus sp. D7]
          Length = 397

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 63/377 (16%), Positives = 108/377 (28%), Gaps = 59/377 (15%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
            ++ K     G   Y +          P P      P+            E       K 
Sbjct: 24  KYLYKYVDAFGNTKYVYAWRLTP--TDPTPKGKREKPSLRELEQQIRRDIEDGIDSTGKK 81

Query: 69  TTLKWLISEY-RKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRSGVESR 126
            T   L   Y +++A   ++  ++    E     +   K G      I     +      
Sbjct: 82  MT---LCQLYAKQNAQRANVKKSTMKQREQLMRLLKEDKLGARSIDTIKPSDAKEWALRM 138

Query: 127 KHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPC--LSVERPKRKTEGIRPWTKEDMQQ 181
           K      ++      S++  F  A++ + V  NP      E  +  T+     T+E  Q 
Sbjct: 139 KEKGFSYNTINNHKRSLKASFYIAIQDDCVRKNPFDFKLSEVLENDTKEKIALTEEQEQA 198

Query: 182 FKSFWSEGSQPRLAFE---FLLYSGLRCSDSCRAGVQHLQ----------------NNIF 222
             SF    +     ++    LL +GLR S+ C   V  +                    +
Sbjct: 199 LLSFIKTDNVYHKYYDDVLILLKTGLRISELCGLTVADIDFKNEVVIIDHQLLKSKEQGY 258

Query: 223 SIKTQKTGTIIT-VELPDG----FMKLLAMTPIG--------KETFFINNDKQKMNATQF 269
            I+T KT + I  V L       F +++   P              F+N   +   A  +
Sbjct: 259 YIETPKTKSGIRQVPLSRETIQAFQRVMKKRPKAEPFVIDGRGNFLFVNPKGKPKVAIDY 318

Query: 270 SIWFKAKATKAGVNK--------SAHGVRKFSATISADAGATAHELMATYGWKTVD---- 317
           S  F     K   +         + H +R    T  A       +L    G   +     
Sbjct: 319 STLFVRMVKKYNKHHMDNPLPHITPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISITMN 378

Query: 318 ---QAETYTKGADRIRL 331
               A   T  ++  RL
Sbjct: 379 WYAHASIDTAKSEVQRL 395


>gi|299783067|gb|ADJ41065.1| Integrase [Lactobacillus fermentum CECT 5716]
          Length = 361

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/277 (12%), Positives = 89/277 (32%), Gaps = 28/277 (10%)

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127
           P   K   + Y++S    ++   + +++   ++ + +   +     I  +  R  +    
Sbjct: 63  PDYFKDWFNLYKRS----NVTERTALTYHQVYNALKQYL-NVPVEDIDRRRYRQFMVDFG 117

Query: 128 HTPS--SAIQFLTSMRVLFKWAVRQEYVAIN--PCLSVERPKRKTEGIRPWTKEDMQQFK 183
              +  +  +F + +    K A+    V  +     ++   K KT  +   + +++Q+  
Sbjct: 118 SNRAKSTVSKFNSLIHACVKDAMYDGVVHKDFVASTNLVFDKSKTREVDYLSIDEIQKLV 177

Query: 184 SFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-----------IKTQK 228
           S      +     +      +Y+G R  +        ++NN  S            +  K
Sbjct: 178 SHLVKTRNVHFTSKYMILTAIYTGARLGEIQALTWGDIKNNTISINKSWNETTQDFQPTK 237

Query: 229 TGTII-TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS-- 285
             + I T+ + D  + LL      K+  F++       +   +   +       +N+   
Sbjct: 238 NESSIRTINVDDQLIALLKELNFNKKQIFVSQYHTVPTSAAVNKTLRESLKACHINRRGF 297

Query: 286 -AHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
             H +R          G   + +    G   +     
Sbjct: 298 HFHSLRHSHVAFLLANGIDLYAISKRLGHSDITTTSR 334


>gi|89092929|ref|ZP_01165881.1| site-specific recombinase [Oceanospirillum sp. MED92]
 gi|89082954|gb|EAR62174.1| site-specific recombinase [Oceanospirillum sp. MED92]
          Length = 323

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 49/319 (15%), Positives = 97/319 (30%), Gaps = 62/319 (19%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----SRK 127
              I   R+     + +  +  ++  +    IR       +K+    I   +E     R+
Sbjct: 3   SQFIQSLREHIRARNYSKRTEKTYVHWVLDFIRFHNRIHPQKLGVPEIVRYLEYLAVKRQ 62

Query: 128 HTPSSAIQFLTSMRVLFK--WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
            +PS+    L ++  L+K  +   +  + +       +PK   +     T+ +++     
Sbjct: 63  VSPSTQRTALNALVYLYKHYFGRDESLLQLGSFKRATKPK---KIPTVLTQHEIRLIFQH 119

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITV--------- 235
                   L  + +  SGLR  ++CR  ++ +  +  SI   +  G    +         
Sbjct: 120 LQ--GDYLLCAKLMYGSGLRLMEACRLRIKDIDLDRLSIHIFEGKGKKQRITTLSEFCVS 177

Query: 236 -------------------------ELPDGFMK----------LLAMTPIGKETFFINN- 259
                                     LP    +             + P  K      N 
Sbjct: 178 ELKNQIAHARLCWQEDKLCHDWGGCYLPPALSRKYPNAPFEFSWQYLLPTKKRLVDERND 237

Query: 260 ---DKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWK 314
               +  ++       FK    K+G+ K A  H +R   AT   + GA    +    G  
Sbjct: 238 NAIRRHHLHERSMQREFKRAVLKSGIAKQATCHSLRHSFATHLLERGADIRTVQEQLGHS 297

Query: 315 TVDQAETYTKGADRIRLGI 333
            V   E YT   +R    +
Sbjct: 298 DVRTTEIYTHVLNRGGRAV 316


>gi|293418008|ref|ZP_06660630.1| hypothetical protein ECDG_02928 [Escherichia coli B185]
 gi|291430726|gb|EFF03724.1| hypothetical protein ECDG_02928 [Escherichia coli B185]
          Length = 334

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 49/310 (15%), Positives = 100/310 (32%), Gaps = 12/310 (3%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEY 78
           G+ +   R    +  R+    +   I         +  ++       +   TL  L+  +
Sbjct: 9   GRWLLDIRPCGRKGKRIRRIFDKKSIATATERYIIANAEKREFIQGYRDRRTLSDLLELW 68

Query: 79  RKSAHWGSLAVNS-RISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFL 137
                      N+ +       +++       +  K+     RS   +    PSSA +++
Sbjct: 69  WVYHGQHRRKANTDKQQLGKIINELGADMFAVELDKLKIIAWRSQKIAEGLKPSSANRYM 128

Query: 138 TSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196
             +  +F    +   + A +P   +     K   +   +K ++       + G Q R+A 
Sbjct: 129 NRLSGMFTALKKIGLWDAEHPVRGIPVLYVKQREMAFLSKNEVTLLLDGLN-GDQRRVAL 187

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFF 256
              L +G R S++ R   + + +N  +    K G   TV +       +     G+   F
Sbjct: 188 -LCLCTGARWSEASRLHGEQIVHNRITFLETKNGRKRTVPVSQEICDAVKTKETGR--LF 244

Query: 257 INNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTV 316
               ++      F    K         ++AH +R   A+     G     L    G  T+
Sbjct: 245 DVKYRE------FCRALKKIKPDLPRGQAAHVLRHTFASHFVMNGGNILALQKILGHATI 298

Query: 317 DQAETYTKGA 326
            Q   Y   A
Sbjct: 299 QQTMAYAHFA 308


>gi|323963898|gb|EGB59392.1| phage integrase [Escherichia coli M863]
          Length = 337

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 44/318 (13%), Positives = 89/318 (27%), Gaps = 39/318 (12%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87
             G+R+R           A+ +       K+ ++     +   L  LI  +         
Sbjct: 20  RDGKRVR-KQFATKGEAIAFENFTMDEVNKKPWLGEKEDRRH-LSELIELWY---SLYGQ 74

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--------------TPSSA 133
            +       +    I    GD    ++T        E+R                 P + 
Sbjct: 75  TLADPKRLMAKLGIICNGLGDPIASELTAGDFTKYREARLKGEVRNEDGTLMSPVKPRTV 134

Query: 134 IQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
                ++  +F    +   + A NP   +   K     +   + +++++  +  +E   P
Sbjct: 135 NLEQRNLSSVFGTLKKLGHWSAPNPLAGLPTFKIAEGELAFLSTDEIKRLLAACAESQSP 194

Query: 193 RLAF--EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250
            L    +  L +G R S++       +     +    K     TV +      L    P 
Sbjct: 195 SLLMIAKICLATGARWSEAENLQGHQISKYRITYTKTKGKKNRTVPIS---QDLYDELPK 251

Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS----AHGVRKFSATISADAGATAHE 306
            +   F          T     F+    +AG++       H +R   A+     G     
Sbjct: 252 NRRKLF----------TPCRKAFERAVKRAGIDLPEGQCTHVLRHTFASHFMMNGGNILV 301

Query: 307 LMATYGWKTVDQAETYTK 324
           L    G   +     Y  
Sbjct: 302 LRDILGHADIKMTMIYAH 319


>gi|145590194|ref|YP_001156791.1| phage integrase family protein [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|145048600|gb|ABP35227.1| tyrosine recombinase XerC subunit [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
          Length = 333

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 46/309 (14%), Positives = 95/309 (30%), Gaps = 50/309 (16%)

Query: 65  RKKPTTLKWLISEYRKSAH-WGSLAVNSRISFESYFD-----QIIRKSGDFDYRKITTKH 118
           + K T L  L+ EY    H    L+ ++  ++           +              + 
Sbjct: 2   KLKATDLHPLMQEYLHELHVLRQLSPHTLKAYGMDLSDLQNFALEDSVELLKVSNGHVRR 61

Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQE------------YVAINPCLSVERPKR 166
               + S+  +  S  + L++ R  + W   ++             +  NP   V+ PKR
Sbjct: 62  WAGRLHSKGKSSRSIARALSAWRGWYDWLTEKDARRDARAGKVTNNLIANPVDDVKAPKR 121

Query: 167 KTEGIRPWTKEDM---------QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG---- 213
                +  + E           +  +    E  +     + L  SGLR S+         
Sbjct: 122 LKSLPKALSVEQALALVNQAVKEAEEKKDLESIRDAAIIDLLYSSGLRLSELLGIDVMQS 181

Query: 214 --VQHLQNNIFSIKT------QKTGTIITVELPDGFMKLLAMTPIGKET---------FF 256
              QH                 K G   +V +    MK LA+    ++           F
Sbjct: 182 KDRQHESAGWLDWDAAEVTVLGKGGKRRSVPVGVPAMKSLAVWRELRDAGSYSEESIALF 241

Query: 257 INNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWK 314
           ++   ++++        +  A +AG+  +   H +R   A+    +      +    G  
Sbjct: 242 LSATGKRLSPRTVQARLRTLAMRAGLPTHVHPHMMRHSFASHVLQSSQDLRAVQEMLGHA 301

Query: 315 TVDQAETYT 323
           ++   + YT
Sbjct: 302 SIASTQIYT 310


>gi|295100102|emb|CBK89191.1| Site-specific recombinase XerD [Eubacterium cylindroides T2-87]
          Length = 397

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 58/378 (15%), Positives = 105/378 (27%), Gaps = 61/378 (16%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
            ++ K     G   Y +          P P      P+            E       K 
Sbjct: 24  KYLYKYVDAFGNTKYVYAWRLTP--TDPTPKGKREKPSLRELEQQIRRDIEDGIDSTGKK 81

Query: 69  TTLKWLISEY-RKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRSGVESR 126
            T   L   Y +++A   ++  +++   E     +   K G      I     +      
Sbjct: 82  MT---LCQLYAKQNAQRANVKKSTQKQREQLMRLLKEDKLGARSIDTIKPSDAKEWALRM 138

Query: 127 KHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPC--LSVERPKRKTEGIRPWTKEDMQQ 181
           K      ++      S++  F  A++ + V  NP      E  +  T+     T+E    
Sbjct: 139 KDKGFSYNTINNHKRSLKASFYIAIQDDCVRKNPFDFKLSEVLENDTKEKVALTEEQELA 198

Query: 182 FKSFWSEGSQPRLAFE---FLLYSGLRCSDSCRAGVQHLQ------------------NN 220
             SF    +     ++    LL +GLR S+ C   +  +                     
Sbjct: 199 LLSFIKTDNVYHKYYDDVLILLKTGLRISELCGLTIMDVDFIHEVVVIDHQLLKSKEQGY 258

Query: 221 IFSIKTQKTGTIITVELPDG----FMKLLAMTPIG--------KETFFINNDKQKMNATQ 268
                  K+GT   V L       F +++   P              F+N   +   A  
Sbjct: 259 YIETPKTKSGTR-QVPLSKETIQAFQRVMKKRPKAEPFVIDGRGNFLFVNQKGKPKVAID 317

Query: 269 FSIWFKAKATKAGVNK--------SAHGVRKFSATISADAGATAHELMATYGWKTVD--- 317
           +++ F     K   +         + H +R    T  A       +L    G   +    
Sbjct: 318 YNMLFVRMVKKYNKHHKDNPLPHITPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISITM 377

Query: 318 ----QAETYTKGADRIRL 331
                A   T  ++  RL
Sbjct: 378 NWYAHASIDTAKSEVQRL 395


>gi|229496223|ref|ZP_04389943.1| integrase [Porphyromonas endodontalis ATCC 35406]
 gi|229316801|gb|EEN82714.1| integrase [Porphyromonas endodontalis ATCC 35406]
          Length = 388

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 50/251 (19%), Positives = 88/251 (35%), Gaps = 20/251 (7%)

Query: 96  ESYFDQIIRKSG--DFDYRKITTKHIRSGVESRK---HTPSSAIQFLTSMRVLFKWAVRQ 150
           +   +  +R  G  D     IT           K   + P++  + L  +  L   AV Q
Sbjct: 131 DRQLNAFVRSRGEEDIPLTAITIDFFDDYRFHLKKEGYAPATINRHLCWLSRLMYRAVSQ 190

Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCS 207
             +  NP   V+  +      R  +K D+ +F +F  +  +    R  F F +++GL  +
Sbjct: 191 GTIRFNPFEEVKY-ETVERKPRFLSKGDVAKFLAFPLQDERAELSRRMFLFSVFTGLAFA 249

Query: 208 DSCRAGVQHLQNN-----IFSIKTQKTGTIITVELPDGFMKLL--AMTPIGKETFFINND 260
           D        ++ N           QKT     + L     ++L        KE + I  D
Sbjct: 250 DLQSLRASQIETNSEGKRYIRKARQKTEVESLIPLHPIAEQILSLYTKKNSKEDYKIFPD 309

Query: 261 KQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
              M+  +     KA     GV    S H  R    T++ +AG     +    G  ++  
Sbjct: 310 T--MSKGKLLTHLKAVGLACGVRTPLSYHVGRHSFGTLTLEAGIPIESIAKMMGHSSIAS 367

Query: 319 AETYTKGADRI 329
            + Y +  D+ 
Sbjct: 368 TQIYAQITDQK 378


>gi|154491554|ref|ZP_02031180.1| hypothetical protein PARMER_01165 [Parabacteroides merdae ATCC
           43184]
 gi|154088355|gb|EDN87400.1| hypothetical protein PARMER_01165 [Parabacteroides merdae ATCC
           43184]
          Length = 411

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 43/276 (15%), Positives = 95/276 (34%), Gaps = 30/276 (10%)

Query: 85  GSLAVNSRISFE---SYFDQIIR-KSG--DFDYRKITTKHIRSGVESRKH----TPSSAI 134
              A+ +   +E    Y  ++I+ K G  D    ++  + +RS     K       ++ I
Sbjct: 130 KDYALITVRRYESCKRYLAELIKLKYGKEDLPLSEVNGELVRSFEFYLKTEKECQQNTVI 189

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WSEGSQ 191
           +++  ++ +   A+  E++  +P + ++  +++       T +++             + 
Sbjct: 190 RYMKCLKKITNLALANEWITKDPFIGIKFHEKEVI-REFLTMDELLTIYHKEFSLERITI 248

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVELPDG----FM 242
            R  F F  ++GL   D  +   +H+  +           QKT  +  + L D       
Sbjct: 249 VRDVFTFAAFTGLAFIDVQQLAPEHIVEDSNGNLWIRKPRQKTKNMCNIPLLDIPLEILR 308

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATIS-AD 299
           K        K+   +          + + + K  A    +NK+   H  R   AT     
Sbjct: 309 KYAEHPACQKKNRLL----PVPCNQKMNSYLKEIADLCMINKTLTTHVARHSYATSVCLA 364

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335
            G +   +    G   +   + Y +  D   L   N
Sbjct: 365 NGVSIENVAKMLGHSNIKMTQHYARVLDSSILRDMN 400


>gi|324999081|ref|ZP_08120193.1| integrase family protein [Pseudonocardia sp. P1]
          Length = 385

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 58/333 (17%), Positives = 108/333 (32%), Gaps = 41/333 (12%)

Query: 24  YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAH 83
           Y R   GR  R  Y +  T   A +S L     + +          T++  ++E+     
Sbjct: 24  YVRTSIGRTER-RYVYGRTKKEA-LSKLVELQDRHDKGIPAGPTKLTVEQFLAEWLDHIK 81

Query: 84  WGSLAVNSRISFES-YFDQIIRKSGDFDYRKITTKHIRSGVESRKHT---PSSAIQFLTS 139
              +   +   +ES   + +  + G      ++ + +R  V+  K T   P       ++
Sbjct: 82  LH-VRPQTWAGYESNVRNHLTPRLGRKKLTALSVRDVRLMVDDLKATGTSPRMVQWIHST 140

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTE-GIRPWTKEDMQQFKSFWSEGSQPRLAFEF 198
           +RV  + AV +E V  N   SV   +   +    P T E+ ++F           L    
Sbjct: 141 LRVALQHAVAEELVTRNVARSVRVAQPSRDSLTEPLTAEEAKEFLRAVKAHRLHGLWVTV 200

Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT----------------GTIITVELP---- 238
           L+  GLR S+ C      +     ++K Q+                  +  TV LP    
Sbjct: 201 LVL-GLRRSEVCGLHWDDVDLGRGTVKIQRGLQRTGGRLQELPTKTRRSRRTVPLPAMVV 259

Query: 239 DGFMKL-----------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SA 286
           D   +            +  T       F ++    +     +  F A   + G  K   
Sbjct: 260 DALREHQERQRAERTAAVRGTWTDTPYVFTSSVGTSLEPRTLTRTFHALLERHGFRKVRL 319

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQA 319
           H +R    ++    G     +M   G   ++  
Sbjct: 320 HDLRHTCVSLLLSLGVHPRIVMEIVGHSAIEMT 352


>gi|293383852|ref|ZP_06629758.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis R712]
 gi|293388673|ref|ZP_06633167.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis S613]
 gi|307286791|ref|ZP_07566875.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX0109]
 gi|312906933|ref|ZP_07765930.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis DAPTO 512]
 gi|312978812|ref|ZP_07790538.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis DAPTO 516]
 gi|291078769|gb|EFE16133.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis R712]
 gi|291081990|gb|EFE18953.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis S613]
 gi|306502103|gb|EFM71388.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX0109]
 gi|310627187|gb|EFQ10470.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis DAPTO 512]
 gi|311288249|gb|EFQ66805.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis DAPTO 516]
 gi|315032392|gb|EFT44324.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX0017]
 gi|323480155|gb|ADX79594.1| phage integrase family protein [Enterococcus faecalis 62]
          Length = 384

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 71/387 (18%), Positives = 129/387 (33%), Gaps = 66/387 (17%)

Query: 14  ERTRHGKIIYYFRK--GHGRRI-RLPYPHESTFIPAYMS--ALTGSTPKREYINSPRKKP 68
            + ++G+  +YF+   G      +  Y  +  F     +  AL     + +    P    
Sbjct: 7   YKKKNGEKAWYFKTYLGTDPLTGKKKYTTKRGFRTQKEAKIALARLEMEIQKNGIPSSTN 66

Query: 69  TTLK-----WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
            T +     WL   Y+ +    S +  + I F  +   I+   G  +  KI+T + +  V
Sbjct: 67  ITFQEVAFMWL-ENYKNTVKESSYS-RTEIIFRKH---ILPSFGKIEISKISTAYCQKIV 121

Query: 124 ESRKHTPSSAIQ--FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT-----EGIRPWTK 176
            +     SS     F+  M  +FK+A+       NP ++V  PK +      + I+ +TK
Sbjct: 122 NTWHSKGSSKQYPLFINYMNQVFKFAINIGVTNQNPVINVIVPKNQDIITSEKKIKFYTK 181

Query: 177 EDMQQFKSFWS------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----- 225
           + +Q F              +    F  L +SG R  +        L      ++     
Sbjct: 182 DQLQIFLKSIEQSESTYITIRDYTLFRLLAFSGCRIGELLALTWDDLNIKTGELQINKTI 241

Query: 226 ----------TQKTGTIITVELPDG----------------FMKLLAMTPIGKETFFINN 259
                     T KT       + D                  +KL    P      F N 
Sbjct: 242 AKSDHYYVSNTPKTKKSNRTLILDAKTITILKKWKLEQKKYLLKLGYTQPSR---IFTNE 298

Query: 260 DKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           + +       +  +     KA + N   HG R   A++   AGA   E+    G   +  
Sbjct: 299 ENEFTINQAITDRYNIYRKKANLPNIGLHGFRHTHASLLYYAGADHKEVQERLGHANIKT 358

Query: 319 A-ETYTKGADRIRLGIKNSRRISSVVD 344
             +TYT   +  +   K + ++S  + 
Sbjct: 359 TLDTYTHLTNDGK--EKTTEKLSKYIG 383


>gi|257415531|ref|ZP_05592525.1| integrase [Enterococcus faecalis AR01/DG]
 gi|257157359|gb|EEU87319.1| integrase [Enterococcus faecalis ARO1/DG]
          Length = 382

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 71/387 (18%), Positives = 129/387 (33%), Gaps = 66/387 (17%)

Query: 14  ERTRHGKIIYYFRK--GHGRRI-RLPYPHESTFIPAYMS--ALTGSTPKREYINSPRKKP 68
            + ++G+  +YF+   G      +  Y  +  F     +  AL     + +    P    
Sbjct: 5   YKKKNGEKAWYFKTYLGTDPLTGKKKYTTKRGFRTQKEAKIALARLEMEIQKNGIPSSTN 64

Query: 69  TTLK-----WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
            T +     WL   Y+ +    S +  + I F  +   I+   G  +  KI+T + +  V
Sbjct: 65  ITFQEVAFMWL-ENYKNTVKESSYS-RTEIIFRKH---ILPSFGKIEISKISTAYCQKIV 119

Query: 124 ESRKHTPSSAIQ--FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT-----EGIRPWTK 176
            +     SS     F+  M  +FK+A+       NP ++V  PK +      + I+ +TK
Sbjct: 120 NTWHSKGSSKQYPLFINYMNQVFKFAINIGVTNQNPVINVIVPKNQDIITSEKKIKFYTK 179

Query: 177 EDMQQFKSFWS------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----- 225
           + +Q F              +    F  L +SG R  +        L      ++     
Sbjct: 180 DQLQIFLKSIEQSESAYITIRDYTLFRLLAFSGCRIGELLALTWDDLNIKTGELQINKTI 239

Query: 226 ----------TQKTGTIITVELPDG----------------FMKLLAMTPIGKETFFINN 259
                     T KT       + D                  +KL    P      F N 
Sbjct: 240 AKSDHYYVSNTPKTKKSNRTLILDAKTITILKKWKLEQKKYLLKLGYTQPSR---IFTNE 296

Query: 260 DKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           + +       +  +     KA + N   HG R   A++   AGA   E+    G   +  
Sbjct: 297 ENEFTINQAITDRYNIYRKKANLPNIGLHGFRHTHASLLYYAGADHKEVQERLGHANIKT 356

Query: 319 A-ETYTKGADRIRLGIKNSRRISSVVD 344
             +TYT   +  +   K + ++S  + 
Sbjct: 357 TLDTYTHLTNDGK--EKTTEKLSKYIG 381


>gi|256617839|ref|ZP_05474685.1| integrase [Enterococcus faecalis ATCC 4200]
 gi|256854186|ref|ZP_05559550.1| predicted protein [Enterococcus faecalis T8]
 gi|256960097|ref|ZP_05564268.1| integrase [Enterococcus faecalis Merz96]
 gi|256597366|gb|EEU16542.1| integrase [Enterococcus faecalis ATCC 4200]
 gi|256709746|gb|EEU24790.1| predicted protein [Enterococcus faecalis T8]
 gi|256950593|gb|EEU67225.1| integrase [Enterococcus faecalis Merz96]
          Length = 382

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 71/387 (18%), Positives = 129/387 (33%), Gaps = 66/387 (17%)

Query: 14  ERTRHGKIIYYFRK--GHGRRI-RLPYPHESTFIPAYMS--ALTGSTPKREYINSPRKKP 68
            + ++G+  +YF+   G      +  Y  +  F     +  AL     + +    P    
Sbjct: 5   YKKKNGEKAWYFKTYLGTDPLTGKKKYTTKRGFRTQKEAKIALARLEMEIQKNGIPSSTN 64

Query: 69  TTLK-----WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
            T +     WL   Y+ +    S +  + I F  +   I+   G  +  KI+T + +  V
Sbjct: 65  ITFQEVAFMWL-ENYKNTVKESSYS-RTEIIFRKH---ILPSFGKIEISKISTAYCQKIV 119

Query: 124 ESRKHTPSSAIQ--FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT-----EGIRPWTK 176
            +     SS     F+  M  +FK+A+       NP ++V  PK +      + I+ +TK
Sbjct: 120 NTWHSKGSSKQYPLFINYMNQVFKFAINIGVTNQNPVINVIVPKNQDIITSEKKIKFYTK 179

Query: 177 EDMQQFKSFWS------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----- 225
           + +Q F              +    F  L +SG R  +        L      ++     
Sbjct: 180 DQLQIFLKSIEQSESTYITIRDYTLFRLLAFSGCRIGELLALTWDDLNIKTGELQINKTI 239

Query: 226 ----------TQKTGTIITVELPDG----------------FMKLLAMTPIGKETFFINN 259
                     T KT       + D                  +KL    P      F N 
Sbjct: 240 AKSDHYYVSNTPKTKKSNRTLILDAKTITILKKWKLEQKKYLLKLGYTQPSR---IFTNE 296

Query: 260 DKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           + +       +  +     KA + N   HG R   A++   AGA   E+    G   +  
Sbjct: 297 ENEFTINQAITDRYNIYRKKANLPNIGLHGFRHTHASLLYYAGADHKEVQERLGHANIKT 356

Query: 319 A-ETYTKGADRIRLGIKNSRRISSVVD 344
             +TYT   +  +   K + ++S  + 
Sbjct: 357 TLDTYTHLTNDGK--EKTTEKLSKYIG 381


>gi|238786957|ref|ZP_04630757.1| Integrase [Yersinia frederiksenii ATCC 33641]
 gi|238724745|gb|EEQ16385.1| Integrase [Yersinia frederiksenii ATCC 33641]
          Length = 334

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 37/271 (13%), Positives = 80/271 (29%), Gaps = 26/271 (9%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           TL  L+  + +        ++S  S ++    I  + G+     +         E R + 
Sbjct: 57  TLNELVERWYEM---HGKTLSSGESRKTKLLAICERIGEPLAADVDKNMFAVYRERRLNG 113

Query: 130 PSSA-----------IQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKE 177
              A            +  + +  +F    R   +   NP   + +     + +   +++
Sbjct: 114 EWQAKGRTIVKEATVNREQSYLHAVFSELKRLGEWEGSNPLDGIRQFSEGDQELAFLSQD 173

Query: 178 DMQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
           ++++      E     L       L +G R  ++       +  +  +    K     TV
Sbjct: 174 EIKRLLVSCDESENKSLGTIVRLCLATGARWGEAQDMKQSQILPSRVTYINTKGKKNRTV 233

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSAT 295
            + +   K +   P  +   F        +   F    K  A +    +  H +R   A+
Sbjct: 234 PISEKLFKRI---PKNRGALFT------PSYDAFKHALKRAAIELPKGQRTHVLRHTFAS 284

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGA 326
                G     L    G  T+     Y   A
Sbjct: 285 HFMMGGGNILVLQQILGHSTILMTMRYAHFA 315


>gi|325268477|ref|ZP_08135107.1| integrase [Prevotella multiformis DSM 16608]
 gi|324989005|gb|EGC20958.1| integrase [Prevotella multiformis DSM 16608]
          Length = 409

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 42/252 (16%), Positives = 83/252 (32%), Gaps = 22/252 (8%)

Query: 90  NSRISFESYFDQIIRKSGDFDYRKITTKHIRSG----VESRKHTPSSAIQFLTSMRVLFK 145
           ++R   + +  +      D  + ++T   I       +    H  S+  +    ++ + +
Sbjct: 139 STRKRLQEFIQK-KYYVSDLAFSQLTENFIYELQAFCLGELGHQQSTFFRVAADLKTVCR 197

Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-----FKSFWSEGSQPRLAFEFLL 200
            A R+          V   +   +  +   +E + +     F     E    R  F F  
Sbjct: 198 LAYREGLADTLLFDKVHIERGDKKTPKALDQEALDKLKALRFDELEEEMETARDVFLFAC 257

Query: 201 YSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF 255
           Y+G    D      +HL  +           QKTG +  ++L    ++L+      +   
Sbjct: 258 YTGAAYCDLMGLSKKHLVRDDEDCLWLKFNRQKTGVLCRIKLLPEAVRLIEKMHSDERET 317

Query: 256 FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS-ADAGATAHELMATYG 312
            I + K       +    KA   +AG+    ++H  R   AT+   + G     +    G
Sbjct: 318 LIPHIKYP----TYQSCLKALRLRAGISFPFTSHTARHTFATLITLEQGVPIETVSKMLG 373

Query: 313 WKTVDQAETYTK 324
              V   E Y K
Sbjct: 374 HTNVSMTERYAK 385


>gi|320173114|gb|EFW48332.1| Integrase [Shigella dysenteriae CDC 74-1112]
          Length = 375

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 48/301 (15%), Positives = 97/301 (32%), Gaps = 12/301 (3%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRK-SAHWGS 86
             G+RIR  +  +S  +      L          NS  ++P ++  LI  + K       
Sbjct: 69  RKGKRIRKKFKTKSDAVLYERWVLAQQHNNEWKGNSIDRRPLSV--LIDLWWKYHGQLMK 126

Query: 87  LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKW 146
              N+R+      + +           + T+ +R     +   PS+  + + ++  +F  
Sbjct: 127 SGHNTRLKLLRLSEAMDDPCVHKLNTTMLTE-LRVSRIEQGIQPSTINREIGALSAMFTA 185

Query: 147 AVRQEY-VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLR 205
            +   + +  NP   ++  K     +   +K +  Q     +E    RLA E LL +G R
Sbjct: 186 LISSGHFLNDNPVQGLKGMKVNEREMGYLSKSECVQLLDALAENPDERLAVEILLSTGAR 245

Query: 206 CSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN 265
             +      + + +   +    K     TV + +   +   +   G +  F   D     
Sbjct: 246 WGEVAALEQRRVLHCRITFSKTKNSKNRTVPISESLFE--KIKKRGGKLVFPTLD----- 298

Query: 266 ATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
            +      K  A      ++ H +    A+     G     L    G   +     Y   
Sbjct: 299 YSLVRDVIKTVAPDVPDGQAVHALHHTFASHFMMNGGNILTLQKILGHAKIQTTMIYAHL 358

Query: 326 A 326
           A
Sbjct: 359 A 359


>gi|312139793|ref|YP_004007129.1| phague integrase [Rhodococcus equi 103S]
 gi|311889132|emb|CBH48445.1| putative phague integrase [Rhodococcus equi 103S]
          Length = 341

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 47/314 (14%), Positives = 96/314 (30%), Gaps = 58/314 (18%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQII----RKSG----DFDYRKITTKHIRSG 122
           L+   +E+         + ++  ++   F  I      ++G          IT   ++  
Sbjct: 8   LEAWFAEFLLHRSTAKPSPHTLKAYRQDFAAISGFLSEQTGVPVSALSVEAITKPSMQQA 67

Query: 123 VESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
             S   T   +S  +  ++   L  +    + +  NP  +V RPK      +    + + 
Sbjct: 68  FASFAATHEVASIRRCWSTWNTLCDYLFSIDTIVANPMSAVLRPKAPKRIPKALPADAVT 127

Query: 181 QFKSFWSE---------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-------NNIFSI 224
           +      E         G +        L +G+R S+     +  ++        +   I
Sbjct: 128 RLIQTLQEDDTDGVRPWGERDFAIILTALLTGMRSSELIAVDLGDVRSAPDPSGGSARVI 187

Query: 225 KTQKTGTIITVE---------LPDGFMKLLAMTP-----------------IGKETFFIN 258
           + +  G+   V          L       +A  P                    +  F+ 
Sbjct: 188 RVRGKGSKDRVATAEPALVATLTGYLESRIARFPETTKRRVPSGATPWQHFRSTDPLFVG 247

Query: 259 NDKQKMNATQFSIWFKAKATKAGVNKS------AHGVRKFSATISADAGATAHELMATYG 312
            D  ++              +AG+N         H  R   AT  AD   +   LM   G
Sbjct: 248 ADGTRITRGTLQYRVLRAYRRAGINGERAKGALTHQFRHTFATNMADENVSIFTLMRMLG 307

Query: 313 WKTVDQAETYTKGA 326
            ++++  + YT+GA
Sbjct: 308 HESMNTTQVYTEGA 321


>gi|212696810|ref|ZP_03304938.1| hypothetical protein ANHYDRO_01373 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676100|gb|EEB35707.1| hypothetical protein ANHYDRO_01373 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 370

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 58/297 (19%), Positives = 103/297 (34%), Gaps = 37/297 (12%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           TL  L+ ++                +  + + I+   G+    KITT  I+  +  +   
Sbjct: 63  TLNELLKDWLPLYEPTVKYTTYTRVYGVFKNHILPYLGNKKLDKITTPVIQKLINKKSQE 122

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE----GIRPWTKEDMQQFKSF 185
            +        +  LFK+A+ Q Y   NPCL++  P  + E     +  W KE++++F   
Sbjct: 123 IADFKLINIYLNRLFKFAINQGYTDYNPCLNIIYPTIRKEQKDMSLEYWDKEELKEFLYH 182

Query: 186 WSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQ--------NNIFSIKTQ-------- 227
             +       L F+   Y+GLR  +        +         N   S+  Q        
Sbjct: 183 AKKDLDQMWYLFFKIATYAGLRKGEILALTWNDIDFKNKTLTVNKSLSVTRQSKKAITSP 242

Query: 228 KTGTII-TVELPDGFMKLLAMTPIG---------KETFFINNDKQKMNATQFSIWFKAKA 277
           KT + I T+ +    +K L    I           +  F     + +N       F+   
Sbjct: 243 KTKSSIRTISIDKTTIKELYNWKIEQSKLKLQNINQYIFTTKQSELINLNSPRKRFERVI 302

Query: 278 TKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TY---TKGADRI 329
            K  + K   H +R   A++  +AG T  ++    G  T       Y   TK  +  
Sbjct: 303 KKHDLRKIRLHSLRHTHASLCFEAGMTIKDVQHRLGHSTSKTTMNIYIHVTKSQEEK 359


>gi|86157887|ref|YP_464672.1| Phage integrase [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85774398|gb|ABC81235.1| Phage integrase [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 387

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 52/374 (13%), Positives = 109/374 (29%), Gaps = 49/374 (13%)

Query: 12  TKERTRHGKIIYYFRK------GHGRRIRLPYPHEST-----FIPAYMSALTGSTPKREY 60
            ++  ++GK  +          G   R R+  P  S      +  A  + +    P R+ 
Sbjct: 4   IRKWKKNGKEGWEVDIRVTMPDGTRMRERVKSPVTSKSGTLKWAQARETEILVRGPARKE 63

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSL-AVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119
                K+  TL     ++ +     +    +++ + ES F   +    D     IT + +
Sbjct: 64  EEPEAKEVPTLAQFWPDFVEGYVNANRGKFSAQRARESIFKHHLAPWHDLPLSAITDEEV 123

Query: 120 RSGVESRKHT-PSSAIQFLTSMRVLFKWAVRQEYVAINPCL--SVERPKRKTEGIRPWTK 176
           +       +    +    L  + V+ K AV  + +   PC    V+ PK          +
Sbjct: 124 QKLKGRLANRSAKTTNNVLVCLSVILKTAVEWKRLPALPCRIRLVKVPKNVKPDFY--DE 181

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ--------- 227
             + Q  +  SE +   +       +GLR  ++       +     ++  +         
Sbjct: 182 GQLAQLVAAASENTGDLVTVLLGADAGLRRGETIGLEWPDIDFQAGTLTVRRAVYRGVVG 241

Query: 228 --KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS 285
             K      V L +     L           +                +  +  AG+   
Sbjct: 242 TTKGNAERVVPLTERLRDALLAHRHLAGRRVLT----GATDESIRSVMERLSRHAGLPAG 297

Query: 286 A---------------HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
                           H +R    T  A AG     + A  G  +++    Y   +   R
Sbjct: 298 TRMKRGKEVPRWAGLYHKLRHTFCTRLAMAGVPPRTIQALAGHVSIETTMRYMHVS--AR 355

Query: 331 LGIKNSRRISSVVD 344
             ++  R + +   
Sbjct: 356 APVEAIRALDAARG 369


>gi|309805934|ref|ZP_07699964.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 03V1-b]
 gi|309807630|ref|ZP_07701574.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 01V1-a]
 gi|308167673|gb|EFO69822.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 03V1-b]
 gi|308169127|gb|EFO71201.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 01V1-a]
          Length = 204

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/167 (15%), Positives = 55/167 (32%), Gaps = 17/167 (10%)

Query: 175 TKEDMQQFKSF---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKT 229
           + E ++  KS       G +     E    +G+R S+     +  +    N+  +  +  
Sbjct: 14  SDEMVKVLKSISTTTPLGLRNMALLELFYATGMRVSEIANLKLDQVDFELNLILVHGKGN 73

Query: 230 -------GTIITVELPDGFMKLLAMT---PIGKETFFINNDKQKMNATQFSIWFKAKATK 279
                  G      L +  ++               F+N++   + +       K     
Sbjct: 74  KDRYVAFGEEAKTALNNYLVEARKKLLLHKTDYGYVFLNSNGNMITSRGLEYIIKNIFLN 133

Query: 280 AGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           AG++ S   H +R   AT   + GA    +    G +++   + YT 
Sbjct: 134 AGISASVHPHMLRHTFATQMLNNGADLRTVQELLGHESISTTQIYTH 180


>gi|327183268|gb|AEA31715.1| integrase [Lactobacillus amylovorus GRL 1118]
          Length = 383

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 51/298 (17%), Positives = 100/298 (33%), Gaps = 45/298 (15%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH-T 129
           K  +  Y+K+        ++ +S E  F+  I+++ G     K+T    +  V +     
Sbjct: 77  KMWVKLYKKTVQ-----ESTFVSTEKIFENHILKQLGSTYLNKLTVSQCQRAVNTWADVA 131

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP---WTKEDMQQFKSFW 186
           P +  +F+     L  + +  E +  NP   V  PK + +  +    ++K+++  F +  
Sbjct: 132 PKTFKRFVFYASKLINYGITMELMKKNPMKKVILPKIERDNKKFDNFYSKDELNTFLNDA 191

Query: 187 SE-GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----------------NNIFSIKTQKT 229
                +  + F  L YSG+R  +        +                 NN   +   KT
Sbjct: 192 KGYNFRYFMFFRLLAYSGMRKGECLALKWSDIDFKNNTIDINKSLASGENNRLYLSPCKT 251

Query: 230 GTIITVELPD----------------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF 273
            + +     D                  +KL           F N++      ++   W 
Sbjct: 252 SSSVRTLDMDTETMHYLKEWRTKQQKEMLKLGLNFLSNDNLVFANSEGNYTVLSKPQRWD 311

Query: 274 KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRI 329
            A   K G+     HG R   A++  DAG +  ++    G   +      YT    + 
Sbjct: 312 NAICKKFGLRHIKVHGFRHTHASLLFDAGVSMKDVKERLGHSDITTTMNIYTHVTKKK 369


>gi|167035377|ref|YP_001670608.1| integrase family protein [Pseudomonas putida GB-1]
 gi|166861865|gb|ABZ00273.1| integrase family protein [Pseudomonas putida GB-1]
          Length = 479

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 49/314 (15%), Positives = 97/314 (30%), Gaps = 28/314 (8%)

Query: 53  GSTPKREYINSPRKKPT-TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY 111
           G+        S    P  T K L + Y +     S+  ++    +S  + I    GD D 
Sbjct: 168 GTPEALFLSQSVNASPGLTFKSLSALYMEERK-DSIQASTMRDVKSSCEAIGAVLGDLDM 226

Query: 112 RKITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
           +  T + ++   +       PS+  + LT +  +  WAV   Y+  +    ++  K    
Sbjct: 227 KSHTREEMKGLRDKLLEDRKPSTVKKLLTRLSTVMDWAVNNGYLDKSFDKGLKPTKGADS 286

Query: 170 GIRPWTKEDMQQFKSFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-NIFSI- 224
                ++  ++   +        +  R A      +G R  +  +     ++      + 
Sbjct: 287 SREALSQAQVKALMTHANSLPVDAWQRWALSLGAITGTRIEELRQLTKADVKQVGEVWVI 346

Query: 225 -------KTQKTGTIIT-VELPDG-----FMKLLAMTPIGKETFFINNDKQKMNATQFSI 271
                  KT KT   +  + L DG         L          F     Q  N    + 
Sbjct: 347 DINRNDGKTAKTKNALRVIPLTDGAYGFDLKAFLEFVRKADSRLFTLGAGQFSNV--LNG 404

Query: 272 WFKAK-ATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKG--AD 327
             +   + KA   ++ H +R   A     A        +  G  +   + + Y  G   +
Sbjct: 405 ALRDVLSLKADRTQTFHSLRHSLAGALKAAEVPVGTAESILGHASGSISYDLYGAGSAVE 464

Query: 328 RIRLGIKNSRRISS 341
             R+       +S 
Sbjct: 465 VKRMAEALIEALSE 478


>gi|255016017|ref|ZP_05288143.1| integrase [Bacteroides sp. 2_1_7]
          Length = 310

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 44/277 (15%), Positives = 96/277 (34%), Gaps = 31/277 (11%)

Query: 96  ESYFDQIIRK-----SGDFDYRKITTKH---IRSGVESRKHTPSSAIQFLTSMRVLFKWA 147
           +SY D +          +  Y  I  +     ++ +  R    ++   ++  +R ++  A
Sbjct: 27  KSYLDALRSFKCFCGMEEIPYAYIDKERLLLYQAWLSKRGCMRNTVSTYMRRIRHIYNLA 86

Query: 148 VRQEYVA--INPCLSVERPKRKTEGIRPWTKEDMQQFK---SFWSEGSQPRLAFEFLL-Y 201
           V    V+   N    V     +++  +    + ++          E  + +L F  +  +
Sbjct: 87  VEAGEVSYIPNLFKGV-FTGVESKRKKALPLDCLRSLMGTPRVEPEMRRTQLCFCLMFSF 145

Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG----FMKLLAMTPIGKETFFI 257
           SG+   D      +++++ + S   QK+G+ I VE+P        +L   T       F 
Sbjct: 146 SGMAFVDFAHLRKENVKDGVLSYHRQKSGSFIRVEIPADVRLLLDELAVCTDKDSPYLFP 205

Query: 258 NNDKQKMNATQFS------IWF-KAKATKA-----GVNKSAHGVRKFSATISADAGATAH 305
               +K     ++      + F +   + A     G   +++ +R   AT   +      
Sbjct: 206 FLSGKKTGEAAYAEYNGALLRFNRDLRSLAETCGVGEPVTSYTIRHSFATTLKEQDVPIE 265

Query: 306 ELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
            +    G  ++   + Y K     RL   N     SV
Sbjct: 266 MISELLGHTSIKTTQIYLKSFSLERLSAVNRACFESV 302


>gi|261495697|ref|ZP_05992141.1| integrase [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261308609|gb|EEY09868.1| integrase [Mannheimia haemolytica serotype A2 str. OVINE]
          Length = 332

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 58/321 (18%), Positives = 106/321 (33%), Gaps = 34/321 (10%)

Query: 20  KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYR 79
           K     RK    +             AY  AL       EY  +P         LI +Y 
Sbjct: 10  KYRAQVRKKGIYKTATFSTKTEANRWAY--ALEAQIDAGEYNTTPNIL---FAELIDKYL 64

Query: 80  KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--TPSSAIQFL 137
           K           R              G+     +T +H+R     R     P S  +  
Sbjct: 65  K--EVTPTKRGKREERYRLLRIAGSNLGNIPLPALTKEHLRQWQNQRLQEVKPVSVSRER 122

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ--FKSFWSEGSQPRL- 194
            ++  LF  A+  +Y+  NP  ++E+ K      R ++ E++++  F + +S    P L 
Sbjct: 123 ATLSALFTKAMEWDYLKENPLKTLEKIKTPPARTRRYSDEEIEKLIFVAGYSPNQAPLLM 182

Query: 195 ------AFEFLLYSGLRCSDSCRAGVQHLQNNIFS--IKTQKTGTIITVELPDGFMKLLA 246
                 A  F + + +R  +      +H+     +  +   K G   TV L    + +L 
Sbjct: 183 QQRAGAALLFAIETAMRAGEIAGLKWEHINLQARTAFLPQTKNGYSRTVPLSTKAIAILN 242

Query: 247 MT----PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISAD 299
                 P  + + F      ++ +      F+    KA +   +   H  R+ + T  A 
Sbjct: 243 QLAQLEPNKQNSVF------QLTSRSLDSNFRKLKQKANLHNADLHFHDTRREALTRLAK 296

Query: 300 AGATAHELMATYGWKTVDQAE 320
              +  EL    G + +   +
Sbjct: 297 Y-LSPMELAKVSGHRDLSILQ 316


>gi|329890514|ref|ZP_08268857.1| phage integrase family protein [Brevundimonas diminuta ATCC 11568]
 gi|328845815|gb|EGF95379.1| phage integrase family protein [Brevundimonas diminuta ATCC 11568]
          Length = 561

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 58/342 (16%), Positives = 102/342 (29%), Gaps = 65/342 (19%)

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG-DFDYR 112
           ++P   ++ + +    T+  LI+ YR          ++   +   F  +    G +   R
Sbjct: 199 ASPLPTHVAASQASGATVAQLITAYRAERVAKHGEESTDRKYSHIFSALEEALGGERPIR 258

Query: 113 KITTKHIRSGVESRKHTPSSAIQF-----------------------------LTSMRVL 143
            +T   +R      +  P  A +                              L ++  +
Sbjct: 259 SVTRADLREIRSLLQRVPKFASRRYPGLTLQEAAEKADLQGGERISPTTVASYLQNLAAV 318

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQP-RLAF-EF 198
           F WAV +E +  NP   +    + +   R ++  ++Q+  +     +EG  P R      
Sbjct: 319 FNWAVEEELLDKNPAQGLVEKAKPSVKRRGFSTTELQRMFTALRPMAEGEHPWRFWIPAM 378

Query: 199 LLYSGLRCSDSCRAGVQHL----------------QNNIFSIKTQKTG-TIITVELPDG- 240
            LYSG R  +     V  L                       +T KT  +  TV +    
Sbjct: 379 ALYSGARAGELAGLRVNDLIEIEGTWCVRYSEYDASGRRIGGRTLKTDASERTVPIHKAV 438

Query: 241 ----FMKLLAMTPIGKETFFINNDKQKMNATQ--FSIWFKAKATKAGVNKSA---HGVRK 291
                   +A  P   E  F +             S WF       G++  A   H  R 
Sbjct: 439 LDVGLRTYVASLPPDTEMLFPSLPPGPEGKLSHYLSKWFGGFRRSLGIDSPATVLHSFRH 498

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
                  D         A  GW T   A  Y    ++ R+ +
Sbjct: 499 GFKDACRDVSIPVEIQDALGGWATQGVATHYG---NKQRIAL 537


>gi|326385291|ref|ZP_08206951.1| phage family integrase/recombinase protein [Gordonia neofelifaecis
           NRRL B-59395]
 gi|326195982|gb|EGD53196.1| phage family integrase/recombinase protein [Gordonia neofelifaecis
           NRRL B-59395]
          Length = 269

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/260 (13%), Positives = 74/260 (28%), Gaps = 12/260 (4%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
               I+ +      G  ++ +R   +                 +    + + ++    + 
Sbjct: 2   WSAAIAAFVSYLGAGGRSLETRKLRQYQLLCFAD-VATAAPSAVELPELVAWLDHEGWSN 60

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           ++       + V F W         NP   +     K    RP  +  ++   +  +   
Sbjct: 61  NTRRSVRACLVVFFTWLQATGQRPDNPARLLPTVAAKPGRPRPCPESALRS--AVVNAAP 118

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQ---NNIFSIKTQKTGTIITVELPDGFMKLLAM 247
           + RL        GLR ++      +H++   +        K G    V + D   + L  
Sbjct: 119 RERLMLALAATGGLRRAEIAAVRGEHVERGFDGAQLRVLGKGGRERLVPISDELAEQLEQ 178

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHEL 307
               +   F +     +         K  A       + H +R   A+ +  A      +
Sbjct: 179 ---RRGYAFPSPRGGHLTPAHVG---KLIARLLPPGWTTHTLRHRFASAAYRADRDIRAV 232

Query: 308 MATYGWKTVDQAETYTKGAD 327
               G  +V   + YT   D
Sbjct: 233 QELLGHASVATTQIYTALPD 252


>gi|315648611|ref|ZP_07901708.1| integrase/recombinase XerD, putative [Paenibacillus vortex V453]
 gi|315275990|gb|EFU39338.1| integrase/recombinase XerD, putative [Paenibacillus vortex V453]
          Length = 235

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 42/201 (20%), Positives = 78/201 (38%), Gaps = 17/201 (8%)

Query: 159 LSVERPKRKTEGIRPWTKEDMQQFKSF--WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216
           L VE PK   +     T+E+++++      ++  Q  +  + LLY+G+R S+     +  
Sbjct: 40  LEVEVPKTAKKLPYVPTEEELKRYYDVVWQAKNFQDMMIVKTLLYTGVRVSELINIKLSD 99

Query: 217 LQNN--IFSIKTQKTGTIITVELPDGFMKLLAM-----TPIGKETFFINNDKQKMNATQF 269
           +  +     I   K      V  P  F ++LAM             F ++ K+K      
Sbjct: 100 VDFHYCQIRINKGKGNKDRIVPFPQSFKEMLAMHADSMKKKQAVYLFESSWKKKYTDRGI 159

Query: 270 SIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
                  + +AG+  N S H +R F  T     G     +    G ++    E Y+K   
Sbjct: 160 RKILAKYSEEAGLVQNLSPHKLRHFLLTWLKKQGIDDALIQPYSGHESRKSLEVYSK--- 216

Query: 328 RIRLGIKNSRRISSVVDSDDP 348
              L I ++++  + V +  P
Sbjct: 217 ---LAITDAQQEYNEVINKFP 234


>gi|312794919|ref|YP_004027841.1| phage integrase family protein [Burkholderia rhizoxinica HKI 454]
 gi|312166694|emb|CBW73697.1| Phage integrase family protein [Burkholderia rhizoxinica HKI 454]
          Length = 407

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 48/338 (14%), Positives = 98/338 (28%), Gaps = 35/338 (10%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPH--ESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
           +R R     Y      G +         +      +   L  S   R  +        T 
Sbjct: 36  KRDRSPNWYYKLYPPGGGKPLQGSTGTRDKAKAQEFHDRLKASLWDRVKLGHRPH--YTW 93

Query: 72  KWLISEYRKSAHWGSLAVNSR---ISFESYFDQIIRKSGDFD----YRKITTKHIRSGVE 124
              + EY       +    ++      + +   +     D +      +I  +  R    
Sbjct: 94  NEAVLEYVADREGMASIETTKTHLRWLDKHLSGVRLVDIDRERIDAIARIKRQEPRVIRT 153

Query: 125 SRKHTPS-------SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
                 +       +  + +  +  +   AV + ++   P    +  K  ++ IR  T  
Sbjct: 154 RYGEQATGRTVSEGTVRRVIGVLVAVLNAAVERGWLDRAPVR--KPVKLVSKRIRWLTAA 211

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN----NIFSIKTQKTGTII 233
           +  +  +   E       F   L +GLR ++        +              K    I
Sbjct: 212 EADRLLAELPEHLADMAQF--SLETGLRRANVTGLQWPQIDLVRRVAWIHPDQAKARKAI 269

Query: 234 TVELPDGFMKLLAMTPIGK------ETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSA 286
           TV L D  + +L      K      E+ F+   +        +  +K    +AG+ +   
Sbjct: 270 TVPLSDTAVAVLQRQLPKKRKVEHVESVFV--YQGAPVRQTATAAWKKALKRAGIRDFRW 327

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           H +R   A+     G     L    GW+T++  + Y  
Sbjct: 328 HDLRHTWASWHVQRGTPLQVLKELGGWQTLEMVQRYAH 365


>gi|229071996|ref|ZP_04205206.1| Integrase/recombinase [Bacillus cereus F65185]
 gi|228711155|gb|EEL63120.1| Integrase/recombinase [Bacillus cereus F65185]
          Length = 322

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 37/288 (12%), Positives = 89/288 (30%), Gaps = 30/288 (10%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
           L  +I + R +     L   +   +E +    +  +G    +++T +HI   + S   + 
Sbjct: 36  LSTVIRQMRATG----LRDRTISDYELHVGHFMSVTGAQFLQELTVEHIYLWLSSMNVSN 91

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS--- 187
            + +  L  ++          ++  N    V+  K  +      T  ++    S      
Sbjct: 92  QTKLTRLKCLKAFLGRCFDNGWIEFNFWKGVK-IKVDSPVKEGATDREINLLFSVLDLTR 150

Query: 188 -EGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQ--KTGTIITVELPDGFM 242
               +   +   +  +G+R     +   +H+  +N +  I     K    I +   D   
Sbjct: 151 FIELRDAASVLLMYQTGIRVGTLSQLEHKHVNLENKVLRIDGGIIKNHESIHLPFDDVLA 210

Query: 243 KLLAMT-----------PIGKETFFINNDKQKM----NATQFSIWFKAKATKAGV-NKSA 286
           ++L               +  +  FI  +  ++         +      +   G+ N + 
Sbjct: 211 RVLGALMKQNDIIRKECHVKNDYLFITKNGGRIATSPTNNNITKRLSKHSKDYGLKNINP 270

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIK 334
           H +R+  A      GA    +    G   +     Y    D+  +   
Sbjct: 271 HALRRGFAKNLLKKGANIALISKALGHSDLAVTTRYLH-LDKEEVAES 317


>gi|209964588|ref|YP_002297503.1| phage integrase [Rhodospirillum centenum SW]
 gi|209958054|gb|ACI98690.1| phage integrase [Rhodospirillum centenum SW]
          Length = 442

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/203 (16%), Positives = 63/203 (31%), Gaps = 9/203 (4%)

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC-LSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +    +A   L  ++     A R + V  +    +V   K  +E    W  +D +  +  
Sbjct: 204 RRRRHTANHQLKILKAALNHAYRGKRVETDSAWATVRPFKGVSEARVRWLAQD-EAVRLV 262

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMK 243
            +     R      L +G R  +  R  VQ +   N    ++  K+G    V L +  + 
Sbjct: 263 NASAPDLRAMVRGALLTGCRYEELARLRVQEIDLLNGSVYVRLSKSGKPRHVVLTEEGVA 322

Query: 244 LLA---MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISA 298
                       +  F   + +    +      K     A +    S H +R   A+  A
Sbjct: 323 FFRDHTAGRTADDLVFTRANGEPWGKSHQHRPIKDACAAAKIKPAISFHILRHTHASWLA 382

Query: 299 DAGATAHELMATYGWKTVDQAET 321
             G +   + A  G       E 
Sbjct: 383 QRGVSMQVIAAQLGHSDTRITER 405


>gi|312973881|ref|ZP_07788052.1| phage integrase family protein [Escherichia coli 1827-70]
 gi|310331415|gb|EFP98671.1| phage integrase family protein [Escherichia coli 1827-70]
          Length = 299

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 40/251 (15%), Positives = 99/251 (39%), Gaps = 21/251 (8%)

Query: 93  ISFESYFDQIIRKSGDFDYRKITTKHI--------RSGVESRKHTPSSAIQFLTSMRVLF 144
              + +   I  + G   Y  +  + I           +  +++ PS+  + L  ++ + 
Sbjct: 25  KDVQRFTQYIEPRLGKIRYCDLRAREIQQVLFDMLEGRIHGQQYAPSTCNRALAILKTMG 84

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL--AFEFLLYS 202
           ++A+RQ+ +  N    +   K   +  R +  +++++     ++            LL +
Sbjct: 85  RYALRQDVLEKNEADKIPLLKENNQRTRFFDADEIRRILDAATQYPNKAAGGLIAMLLLT 144

Query: 203 GLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE---TFFI 257
           G R S+      +H+   N    I   K G   TV L D  + ++   P        F I
Sbjct: 145 GTRKSEMLNVRHEHIDRANRTLFIPYTKNGRSRTVYLSDAALSIIDAIPRVGSNPYLFAI 204

Query: 258 NNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAG-ATAHELMATYGW 313
            ++ + ++  +++  ++    + G++K+    H  R   A++   +G  + +++ A    
Sbjct: 205 KDNGKPISEPRWA--YEKILAQCGIDKNEVCFHTTRHSVASLLVSSGQFSLYDVKAQLAH 262

Query: 314 KTVDQAETYTK 324
            ++   E Y K
Sbjct: 263 ASIQSTERYAK 273


>gi|294619699|ref|ZP_06699115.1| prophage Lp3 protein 1, integrase [Enterococcus faecium E1679]
 gi|291594082|gb|EFF25540.1| prophage Lp3 protein 1, integrase [Enterococcus faecium E1679]
          Length = 401

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 45/278 (16%), Positives = 97/278 (34%), Gaps = 39/278 (14%)

Query: 85  GSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHT-PSSAIQFLTSMRV 142
            ++  ++  S +  FD  I++  GD    KI     +  V +   + P    +       
Sbjct: 91  KTVKESTWSSTKQIFDTHILKVFGDKFIDKIDVFFCQEAVNTWSDSHPKIFKKIKNYTSN 150

Query: 143 LFKWAVRQEYVAINPCLSVERPK-----RKTEGIRPWTKEDMQQFKSFWSEGSQPR-LAF 196
           +F +A   + +  NP   V  P+      + + I  +TKE++ +F          R L F
Sbjct: 151 VFDYAASLQIITSNPMKLVSIPRGEALDIEDKNIEFYTKEELIEFLEAIRNDDDERYLFF 210

Query: 197 EFLLYSGLRCSDSCRAGVQHLQ----------------NNIFSIKTQKTGT-IITVELPD 239
             L ++G+R  ++       +                      + T K+ +    + L +
Sbjct: 211 SLLAFTGIRKGEAFALTWSDIDFKSKTLNINKTVTRGYQGRLIVNTPKSKSGKRKIYLDN 270

Query: 240 GFMKLLA--------MTPIGKETFFINNDK----QKMNATQFSIWFKAKATKAGVNKSAH 287
             + LL         +  I  E    ++D       ++ +  ++ +K          + H
Sbjct: 271 DLISLLRKYYIKNKTIVTIQSENLIFHHDGLLYNPTVSRSWLNVIYKHHPELTK-RITTH 329

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTK 324
           G R   A++  ++GA+  ++    G   +      YT 
Sbjct: 330 GFRHTHASLLFESGASLKDVQERLGHADIQTTSNIYTH 367


>gi|204929529|ref|ZP_03220603.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|204321248|gb|EDZ06448.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
          Length = 341

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/323 (13%), Positives = 90/323 (27%), Gaps = 45/323 (13%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87
             G+R+R           A+ +       K+ ++   +     L  +I +      W SL
Sbjct: 20  RDGKRVR-KQFATKGEAIAFENFTMDEVNKKPWLG-EKDDRRQLSEVIEQ------WHSL 71

Query: 88  AVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGVESRKH--------------TP 130
              +    +    +   I    GD    ++T        E+R                 P
Sbjct: 72  YGQTLADPKRLMSKLSIICHGLGDPIASELTAGDFTKYREARLKGEVRSEDGALMSPVKP 131

Query: 131 SSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            +      ++  +F    +   + A NP   +   K     +     +++++     ++ 
Sbjct: 132 RTVNLEQRNLSSVFGTLKKLGHWSAPNPLAGLPTFKIAEGELAFLAPDEIKRLLDACADS 191

Query: 190 SQPRLAF--EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
             P L    +  L +G R S++       +     +    K     TV +       +  
Sbjct: 192 QSPSLLMITKICLSTGARWSEAENLQGHQVSKYRITYTKTKGKKNRTVPISQDLYDEIPR 251

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV----NKSAHGVRKFSATISADAGAT 303
                      N  +          F+    +AG+     +  H +R   A+     G  
Sbjct: 252 -----------NRGKLFTP--CRKAFERAIKRAGIELPEGQCTHVLRHTFASHFMMNGGN 298

Query: 304 AHELMATYGWKTVDQAETYTKGA 326
              L    G   +     Y   A
Sbjct: 299 ILVLRDILGHADIKMTMIYAHFA 321


>gi|269977906|ref|ZP_06184860.1| tyrosine recombinase XerC [Mobiluncus mulieris 28-1]
 gi|269933872|gb|EEZ90452.1| tyrosine recombinase XerC [Mobiluncus mulieris 28-1]
          Length = 361

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/259 (13%), Positives = 77/259 (29%), Gaps = 49/259 (18%)

Query: 115 TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
             +     +  R  + ++  + + S R    WA++  +++ +  L +  PK         
Sbjct: 86  RIRAWLGDMSRRGASRATLARRVASFRTFSAWALKHGFMSCDSGLRLHSPKPDNSLPTVL 145

Query: 175 TKEDMQQFKSFW-----------------------------------SEGSQPRLAFEFL 199
            +  + +  +                                       G +     E L
Sbjct: 146 NEAQVARLLNTARLQAYSLGVHQKASKSQTEIPDSIPGDSAVPYRANPVGLRDWALLELL 205

Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE------------LPDGFMKLLA 246
             +G+R S+     ++ +  +  +I+   K G                  L  G   L++
Sbjct: 206 YATGVRVSELTGLRLRDISRSEATIRVCGKGGKERVAPYGIPAGIALDEYLEQGRPVLVS 265

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAH 305
                 E  F+     +++              AGV +   HG+R  +AT   + GA   
Sbjct: 266 PDRDAGEWVFLGVKGGRLDTRLVRGMLHRMTAVAGVPDLGPHGLRHTAATHLLNGGADLR 325

Query: 306 ELMATYGWKTVDQAETYTK 324
            +    G  ++   + YT 
Sbjct: 326 CVQEILGHASLGTTQRYTH 344


>gi|254776421|ref|ZP_05217937.1| phage integrase family protein [Mycobacterium avium subsp. avium
           ATCC 25291]
          Length = 364

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 49/261 (18%), Positives = 97/261 (37%), Gaps = 31/261 (11%)

Query: 85  GSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSM 140
             +   +   ++ Y  + I    G     K+T + I   V           +       +
Sbjct: 85  TGVEKKTISEYQRYATRDIGPPLGAIPLGKLTREDIAEWVNEMFEAGAAGGTIENKHGFL 144

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200
               K AV   ++A NPC  +  P+ + + +   T+++ Q  K+ +S   +P +  EFL+
Sbjct: 145 SGALKRAVEDGHLAANPCQGIRLPRTEEQEMVCLTRDEFQTLKAAFSAHYRPLV--EFLV 202

Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQ---------------KTGTII-TVELPDGFMKL 244
            SG R S++       +     +++                 KT   + T+ +P     +
Sbjct: 203 ASGCRASEALALRPSDVDREASTVRIARAWKRAGSGYELGPPKTKRSVRTINVP---KSV 259

Query: 245 LAMTPIGKETFFINNDKQK--MNATQFSIWFK--AKATKAGVNKSA--HGVRKFSATISA 298
           L     G E  F   +     + + + ++W+K  AKA K G+ K    H +R   A+   
Sbjct: 260 LDQLDYGGEWLFTGTNGGPVRIYSWRSNVWYKSLAKAQKNGLAKRPRVHDLRHTCASWMI 319

Query: 299 DAGATAHELMATYGWKTVDQA 319
             GA    +    G +++   
Sbjct: 320 QNGAPLPLIRDHLGHESIKTT 340


>gi|262046512|ref|ZP_06019473.1| integrase [Lactobacillus crispatus MV-3A-US]
 gi|260572961|gb|EEX29520.1| integrase [Lactobacillus crispatus MV-3A-US]
          Length = 388

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/289 (11%), Positives = 84/289 (29%), Gaps = 30/289 (10%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--H 128
                  +  +  +  +  +++  + + +  + +  G    + I+    +S +      H
Sbjct: 70  FADYFEHWYLTFKFPIIRKSTQKRYITNYHYLEKYFGSTKIKDISRAKYQSFLNWLGKNH 129

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS--VERPKRKTEGIRPWTKEDMQQFKSFW 186
            P++  +    ++     A+    +  N      +   +     I    + +M +     
Sbjct: 130 APATVRKTNIMVKACAGNAIEDGLIVKNFTNRTTITGNQDNVRAIEYLNEGEMNKLVQLC 189

Query: 187 SEGSQPR-----LAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK-----------TQK 228
                PR     L     L++G R  +        +   N I  I              K
Sbjct: 190 LTNLTPRYTSKYLVLA-GLFTGARLGELTALKWTDIDFKNKIIDINKTWNPNLKILGPTK 248

Query: 229 TGTIIT-VELPDGFMKLLAMTPIGKETFF--INNDKQKMNATQFSIWFKAKATKAGVNK- 284
           T + +  +++    +  L    I    F   I       +++  + + +    + G+NK 
Sbjct: 249 TESSVRKIKVNSFLLDKLKQLKINNSEFIFAIPRTGLPPSSSAVNQFLRKAIKEIGLNKP 308

Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIR 330
               H +R    +     G     +    G   +      Y    D  +
Sbjct: 309 DFHFHSLRHTHVSYLISQGIDIAAISKRLGHANIAITLSIYAHLLDEYK 357


>gi|260590923|ref|ZP_05856381.1| integrase [Prevotella veroralis F0319]
 gi|260536788|gb|EEX19405.1| integrase [Prevotella veroralis F0319]
          Length = 409

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 65/198 (32%), Gaps = 17/198 (8%)

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-----FKSFWSEGSQPRL 194
           ++ + + A R+    +      +  K   +  +   +E + +     F     E    R 
Sbjct: 192 LKTVCRLAYREGLADVLLFDKAKISKGDNKLPKALDREALDKLKALRFDDLEEEMETARD 251

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVELPDGFMKLLAMTP 249
            F F  Y+G    D       HL  +           QKTG +  ++L    ++L+    
Sbjct: 252 IFLFACYTGAAYCDLMELKKSHLVRDDDGNLWLKFNRQKTGVLCRIKLLPEAIRLMEKLH 311

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS-ADAGATAHE 306
            G+    +      +    +    KA   +AG+    + H  R   AT+   + G     
Sbjct: 312 SGERETLL----PYIKYKNYQTCLKALRLRAGISFPFTTHTARHTFATLITLEQGVPIET 367

Query: 307 LMATYGWKTVDQAETYTK 324
           +    G   +   E Y K
Sbjct: 368 VSKMLGHSNISMTERYAK 385


>gi|218281982|ref|ZP_03488300.1| hypothetical protein EUBIFOR_00869 [Eubacterium biforme DSM 3989]
 gi|218217038|gb|EEC90576.1| hypothetical protein EUBIFOR_00869 [Eubacterium biforme DSM 3989]
          Length = 307

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/284 (11%), Positives = 95/284 (33%), Gaps = 35/284 (12%)

Query: 90  NSRISFESYF-DQIIRKSGDF-DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWA 147
           ++  +++    + I    GD  +  +   +           +  +    +  ++++ K+ 
Sbjct: 25  STYAAYQLLIQNHIKPYFGDLYEVNEEKVQQFVFDKLDAGLSEKTIRDIIIVLKMILKFG 84

Query: 148 VRQEYVAINPCLSVERP-KRKTEGIRPWTKEDMQQFKSFWSEG-SQPRLAFEFLLYSGLR 205
           ++  Y+     +  + P K++ + +   +K D ++F        +   L     L +G+R
Sbjct: 85  IKNGYLEY-IQIDAKFPSKQEKKELDVLSKADQKKFMEHLRNNFTFKNLGIFICLSTGMR 143

Query: 206 CSDSCRAGVQHLQ--NNIFSIK---------------------TQKTGTII-TVELPDGF 241
             + C      +     +  ++                     T KT   +  + +    
Sbjct: 144 IGEICGLRWCDVDTAEGVIKVRHTLQRIYIIEGETRHTELLLDTPKTANSVRDIPMSSEL 203

Query: 242 MKLLAMT--PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISA 298
           +K+L      + +  + I+ND + +    +  ++K    +  +     HG+R   AT   
Sbjct: 204 LKMLKSLNKVVNENYYVISNDIKPIEPRTYRNYYKKLCKQLDIPELKFHGLRHSFATRCI 263

Query: 299 DAGATAHELMATYGWKTVDQA-ETYTK--GADRIRLGIKNSRRI 339
           ++ A    +    G   +      Y       + +   K  R +
Sbjct: 264 ESKADYKTVSVLLGHSNISTTLNLYVHPNKEQKKKTIDKMLRSL 307


>gi|182680028|ref|YP_001834174.1| integrase family protein [Beijerinckia indica subsp. indica ATCC
           9039]
 gi|182635911|gb|ACB96685.1| integrase family protein [Beijerinckia indica subsp. indica ATCC
           9039]
          Length = 323

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/272 (13%), Positives = 80/272 (29%), Gaps = 30/272 (11%)

Query: 88  AVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESRKH---TPSSAIQFLTSM 140
           A         +   +    G       + ++T   +R+ + +R++      S  + L  +
Sbjct: 42  AEAYARDLRQFLAFLAEHFGGAPSLETFAELTPADLRAFMTARRNQDVGSRSLSRQLAGL 101

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA----- 195
           R   ++  R+         +V  PK      +P       +     +     R A     
Sbjct: 102 RSFARFLEREGKGKALVFSAVRTPKLARHLPKPLNPTAACEVVDVANRTDTERPAWVLAR 161

Query: 196 ----FEFLLYSGLRCSDSCRAGVQHL---QNNIFSIKTQKTGTIITVELPDG-------F 241
                  L  +GLR S++     +     + +  ++  +   T +   +           
Sbjct: 162 DAAVLGLLYGAGLRISEALSLTRREAPIGETDALTVTGKGRKTRMVPIIEPVRRGIESYL 221

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISAD 299
                  P      F+      ++     +  +      G+ KSA  H +R   AT    
Sbjct: 222 ALCPYPLPPQGP-LFVGAKGGPLSPRIIQLAVEQMRGALGLPKSATPHALRHSFATHLLG 280

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            G     +    G  ++   + YT   D  RL
Sbjct: 281 RGGDLRTIQELLGHASLSTTQLYT-AVDSERL 311


>gi|151222137|ref|YP_001332959.1| phage integrase [Staphylococcus aureus subsp. aureus str. Newman]
 gi|295428587|ref|ZP_06821214.1| phage integrase [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|150374937|dbj|BAF68197.1| phage integrase [Staphylococcus aureus subsp. aureus str. Newman]
 gi|295127569|gb|EFG57208.1| phage integrase [Staphylococcus aureus subsp. aureus EMRSA16]
          Length = 353

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 52/333 (15%), Positives = 114/333 (34%), Gaps = 28/333 (8%)

Query: 13  KERTR--HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT- 69
           + +TR   GK   Y  K  G+R R               A +    K   + S       
Sbjct: 8   RMKTRCYDGKKWQYEFKHEGKRYRKKGFRTK------REANSAGLDKLNELRSGFNIDNY 61

Query: 70  -TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRSGVE--S 125
            TL+     + K+     +  N+   + +    I + K G  +  KI  +  +  +   S
Sbjct: 62  ITLEEYFENWIKTYKQPVVKENTYRHYRNALQHIQKHKIGKMELSKINRQVYQKFINDYS 121

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV-----ERPKRKTEGIRPWTKEDMQ 180
           ++H   +  +   ++R     A+    +  NP   V     +  K + E     T+ ++ 
Sbjct: 122 KEHAKETIRKTNGAIRSALDDALYDGLIFKNPAYKVNYKAGKPTKSEQEKFISVTEYEIL 181

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTG-TIITVEL 237
           +      + ++  LA   ++ +G R S +    ++H+    N   I  +KT  +   + +
Sbjct: 182 K-DHVRKKRTRSSLALFIMICTGCRVSGARNIKIEHINQVKNTIFIDERKTNTSPRYISI 240

Query: 238 PDG----FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKF 292
                   M +++   I  + +        +N    +   K+      +   ++H +R  
Sbjct: 241 AKSDMKHIMDVISTFAISYDGYIFKEGGSIINLHAINNALKSACRVNNIPIITSHALRHT 300

Query: 293 SATISADAGATAHELMATYGWKTVD-QAETYTK 324
             +     G + H +    G K +      Y+ 
Sbjct: 301 HCSYLLAKGVSIHYISKRLGHKNIAITTSVYSH 333


>gi|17230995|ref|NP_487543.1| hypothetical protein all3503 [Nostoc sp. PCC 7120]
 gi|17132636|dbj|BAB75202.1| all3503 [Nostoc sp. PCC 7120]
          Length = 395

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 56/394 (14%), Positives = 120/394 (30%), Gaps = 74/394 (18%)

Query: 2   TPSLRLPPFVTKERTRHGKIIYYFRKGHGRR-IRLPYPHESTFIPAYMS--------ALT 52
           TP+ ++P         +G++   FR G  R  + L  P       A  +          +
Sbjct: 5   TPTGKVPKGNVSIIDSNGRLQLRFRYGGKRYYLSLGLPDTKISRKAAEAKKNQIELDIAS 64

Query: 53  GSTPKREYINSPRKKPTT------------LKWLISEY--RKSAHWGSLAVNSRISFESY 98
           G+         P+   +T            +  L   Y   KS+        +   + + 
Sbjct: 65  GNFDPTLDKYKPQSVLSTVEPDITPKFTPKITELWESYINYKSSSLKE----TTKGYHNS 120

Query: 99  FDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158
           F ++ ++ G+                 R  T     + L  +     WAV+ + +  NP 
Sbjct: 121 FTKLFQRLGNIPLPDALKVKAE---LERITTVGQTKRALIQLNAACNWAVKHKLIDSNPY 177

Query: 159 LSV--ERPKRKTEG---IRPWTKEDMQQFKSFWSEG--------------SQPRLAFEFL 199
           + +  E PK + +       +++++ ++    + +               S      EFL
Sbjct: 178 VGMANEMPKYRYQLEPKPNAFSEQEREKIIKAFKDHRGNWNGRGYTGISYSHYASLVEFL 237

Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIK-----------------TQKTGTIITVELPDGFM 242
             +G R S++     +H+  +   I+                   K          +   
Sbjct: 238 FLTGCRPSEAIGLQWKHIAEDCGYIRFEESVTTSGNGIPTRVQGSKNNKKRQFPCSERLR 297

Query: 243 KLL----AMTPIGKETFFINNDKQKMNATQF-SIWFKAKATKAGVNKSAHGVRKFSATIS 297
            LL       P   +  F +   + +N   F +  +     +   N + +  R    TI 
Sbjct: 298 NLLISIKPENPYLDDLVFPSPKGKVINYNNFCNNAWNRIVDQIKPNTTPYSCRDTFITIQ 357

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
              G +   +       +V+  E     AD +++
Sbjct: 358 ILKGVSESVIGKWCD-TSVEMIEK--HYADYLKM 388


>gi|323968119|gb|EGB63529.1| phage integrase [Escherichia coli M863]
 gi|327252439|gb|EGE64098.1| prophage CP4-57 integrase [Escherichia coli STEC_7v]
          Length = 413

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 54/333 (16%), Positives = 114/333 (34%), Gaps = 33/333 (9%)

Query: 24  YFRKGHGRRIRLPYPHESTFI--------PAYMSALTGSTPKREYINSPRKKPT-----T 70
           Y+R    +RI L +                 Y + ++  T  +++    R+        T
Sbjct: 47  YYRPSDKKRILLSFGSLEDVSLADARKRRSEYRTLISAGTDPQDHEKKKREAEARRQGNT 106

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHT 129
            + + + + +     +LA N+        D  +    G+     +T +     +   K  
Sbjct: 107 FENVAAAWYQVKISQNLAPNTIKDIWRSLDKYVFPFIGNTPIDTLTARRFVEVLTPIKER 166

Query: 130 PS--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVER-----PKRKTEGIRPWTKEDMQQF 182
            +  +  + L  +  +  +A     +  NP ++V +      K+    IRP    ++ Q 
Sbjct: 167 GNLETLKRVLQRVNEVMDYAANSGLIDANPAMNVRKAFPSPVKKHMPTIRPEQLPELMQA 226

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIITVELP 238
            S  +   Q RL  E+ L +  R  ++  A  + +  +           K      + L 
Sbjct: 227 LSVSATERQTRLLIEWQLLTVTRPVEASSARWEEIDMDAQQWTIPAGRMKMRRDHVIPLC 286

Query: 239 DGFMKLLAMTPI---GKETFF--INNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFS 293
              M +L         +E  F  + + +Q MN+   +   +     AGV  S HG+R   
Sbjct: 287 SQAMAVLEAMKPISHHREHVFPSLKDPRQPMNSQTANAALRRMGF-AGVLVS-HGLRAIF 344

Query: 294 ATISADAGATAHELMATYGWKTVDQAET-YTKG 325
           +T + + G     + A       ++    Y + 
Sbjct: 345 STAANEEGFEPDVIEAALAHVDTNEVRRAYNRS 377


>gi|309808160|ref|ZP_07702071.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 01V1-a]
 gi|308168596|gb|EFO70703.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 01V1-a]
          Length = 329

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/248 (14%), Positives = 77/248 (31%), Gaps = 14/248 (5%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS----AIQFLTSMRVL 143
           +  S   + +  + +  K    + R++ T  +R+ +   +H  +S           +   
Sbjct: 68  SEKSLTYYRATIEVMTTKI-KKNVREMETDDLRTYLTEYQHEKNSSKVTVDNIRRILSSF 126

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203
           F W   + Y+  +P   + + K        +T E +++ +    E  +     + L  +G
Sbjct: 127 FSWLEDENYILKSPARRIHKVKAALTIKETYTDEALEKMRDSCEEP-RDLALIDILASTG 185

Query: 204 LRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDG----FMKLLAMTPIGKETFFIN 258
           +R  +        +       +   K      V          +  L          F++
Sbjct: 186 MRVGELVLLNRDDINFEERECVVFGKGSKERMVYFDARTKIHLLTYLQGRTDDNPALFVS 245

Query: 259 NDKQK--MNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKT 315
                  +         +    K  + K   H  R+  AT++ D G    +L    G K 
Sbjct: 246 LRAPHERLRIGGVECRLRELGNKLNIEKVHPHKFRRTLATMAIDKGMPIEQLQQLLGHKR 305

Query: 316 VDQAETYT 323
           +D    Y 
Sbjct: 306 IDTTLQYA 313


>gi|282917353|ref|ZP_06325108.1| phage integrase [Staphylococcus aureus subsp. aureus D139]
 gi|282318980|gb|EFB49335.1| phage integrase [Staphylococcus aureus subsp. aureus D139]
          Length = 345

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 50/325 (15%), Positives = 110/325 (33%), Gaps = 26/325 (8%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT--TLKWLIS 76
           GK   Y  K  G+R R               A +    K   + S        TL+    
Sbjct: 8   GKKWQYEFKYEGKRYRKKGFRTK------REANSAGLDKLNELRSGFNIDNYITLEEYFE 61

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRSGVE--SRKHTPSSA 133
            + K+     +  N+   + +    I + K G  +  KI  +  +  +   S++H   + 
Sbjct: 62  NWIKTYKQPVVKENTYRHYRNALQHIQKHKIGKMELSKINRQVYQKFINDYSKEHAKETI 121

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSV-----ERPKRKTEGIRPWTKEDMQQFKSFWSE 188
            +   ++R     A+    +  NP   V     +  K + E     T+ ++ +      +
Sbjct: 122 RKTNGAIRSALDDALYDGLIFKNPAYKVNYKAGKPTKSEQEKFISVTEYEILK-DHVRKK 180

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTG-TIITVELPDG----F 241
            ++  LA   ++ +G R S +    ++H+    N   I  +KT  +   + +        
Sbjct: 181 RTRSLLALFIMICTGCRVSGARNIKIEHINQVKNTIFIDERKTDTSPRYISIAKSDMKHI 240

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADA 300
           M +++   I  + +        +N    +   K+      +   ++H +R    +     
Sbjct: 241 MDVISTFAISYDGYIFKEAGSIINLHAINNALKSACRVNNIPIITSHALRHTHCSYLLAK 300

Query: 301 GATAHELMATYGWKTVD-QAETYTK 324
           G + H +    G K +      Y+ 
Sbjct: 301 GVSIHYISKRLGHKNIAITTSVYSH 325


>gi|46202173|ref|ZP_00208415.1| COG0582: Integrase [Magnetospirillum magnetotacticum MS-1]
          Length = 371

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 45/276 (16%), Positives = 90/276 (32%), Gaps = 44/276 (15%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFK 145
           +LA   R   E + + +    G        T   R    +R     +A + +  +  +  
Sbjct: 67  ALADIDRKVIEKFMNDV--ALGKIKSIGAKTAKNRGRTNTRGGR-GAATRTIGLLGGILA 123

Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF-------KSFWSEGSQPRLAFE- 197
           + V++  +  NP + ++R K  T+  R  + E++ +        ++ +      R A+E 
Sbjct: 124 FGVKEGEIPSNPVIGIKRFK-DTKNERFLSGEELAKLGDVLRQAEANFRAWEVARKAWEG 182

Query: 198 ------------------------FLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGT 231
                                    L  +G+R  ++          +  +  +   KTG 
Sbjct: 183 DGRQGKAPVRPSNAEAPAAIGVIRLLALTGMRRGEALALDWGEVDFEYGLLQLADSKTGR 242

Query: 232 IITVELPDGFMKLLAM--TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHG 288
             +V L     +LLA    P G    F       +        ++    +AG++    H 
Sbjct: 243 K-SVPLGAAARQLLAAIPKPEGGGLVFRGPSGGPVG--GLPHIWERIRKRAGLDGVRLHD 299

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +R   A + A  G +   L A  G       + Y  
Sbjct: 300 LRHSYAAVGASGGQSLPILGAILGHSDTATTQRYAH 335


>gi|149916988|ref|ZP_01905489.1| Phage integrase [Plesiocystis pacifica SIR-1]
 gi|149822266|gb|EDM81657.1| Phage integrase [Plesiocystis pacifica SIR-1]
          Length = 421

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 44/334 (13%), Positives = 96/334 (28%), Gaps = 43/334 (12%)

Query: 53  GSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYR 112
           G          P+  P TL     E+       + A        S  + ++   GD    
Sbjct: 51  GPNGSGRRKAKPQAVP-TLAEFAPEFMAYQATLNKATELASKRSSLKNHLLPVFGDLRLD 109

Query: 113 KITTKHIRSGVESR------------------KHTPSSAIQFLTSMRVLFKWAVRQEYVA 154
           +I  + I      +                     P +    L  +    + A +   + 
Sbjct: 110 QIDARAIDRYKMRKLSPEHAATVASTRRRAGEGLKPKTINNHLMVLSRALRVAQKWGVLD 169

Query: 155 INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP-RLAFEFLLYSGLRCSDSCRAG 213
             P   +E  +   +       E+ +++ +   E      +       +GLR  +     
Sbjct: 170 RVP--EIELLRVTKQPFDFLDFEEAERYLAAAREHYPDWHVFVLVAARTGLRVGELLALQ 227

Query: 214 VQHLQNNIFSIKTQ------------KTGTIITVELPDGFMKLL--------AMTPIGKE 253
            +H++    +++ +            K+G    V L     + L        A       
Sbjct: 228 WKHVRLAGRTLRVELSYTRAGGVSSPKSGKAREVPLTWDVARALEVHREVLGAKARARDA 287

Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYG 312
             F N D ++ +      +    A  A +     H +R   A+ +   G     +    G
Sbjct: 288 LVFPNADGERGSLRSVGHFVSRIAKAAKLRHVHPHMLRHTFASHAVMRGVPMRVVQEWLG 347

Query: 313 WKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346
             +++    Y   A+ I L + +       +++D
Sbjct: 348 HASIEMTMRYAHLAEGIGLDLIDRIAPERDLEAD 381


>gi|296161353|ref|ZP_06844160.1| integrase family protein [Burkholderia sp. Ch1-1]
 gi|295888339|gb|EFG68150.1| integrase family protein [Burkholderia sp. Ch1-1]
          Length = 354

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 44/332 (13%), Positives = 105/332 (31%), Gaps = 27/332 (8%)

Query: 12  TKERTRHGKIIYYFRKGHGRRIR-LPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
            ++  + G      R   G+RIR      +      Y   L     +++ +        T
Sbjct: 3   IRKDKKSGIWHLDIRTPGGQRIRRSTETSDRKAAQEYHDRLKADLWRQDKLG--ETPDRT 60

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV------- 123
            +     +      G    ++++    + +    K      R +T   I   +       
Sbjct: 61  FEEAAVRFLHECE-GQRDYSTKL---RHVEYWRAKFAGRPVRSLTADDIIDALPAQNLRG 116

Query: 124 -ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK-RKTEGIRPWTKEDMQQ 181
              +  T S+  +++++++ +       E++   P    + P+  + +    W   ++  
Sbjct: 117 KARQPLTGSTRNRYISTIKRMLNLCAEWEWIDRVP----KLPRYHEPDVRVRWEPPEVIT 172

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----NNIFSIKTQKTGTIITVEL 237
                 +    R A    + +G+R  +        +     N   + ++ K+    +V L
Sbjct: 173 ALIQALQLPWMRDAAIVAVATGMREGELFGLTRSQVDLAQHNAWITHESAKSKRARSVPL 232

Query: 238 PDGFMKL-LAMTPIGKETFFINNDKQKMNATQFSIW-FKAKATKAGV-NKSAHGVRKFSA 294
            D  + +        K   F   +  +    Q     F+      G+ +   H +R   A
Sbjct: 233 NDDAISVFARRMKTAKSLMFTRGEGLEKRIQQIDTRDFERACEIVGIEDFHWHDLRHTWA 292

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGA 326
           +     G     L    GW+T++  + Y   A
Sbjct: 293 SWHVQRGTPLMVLKELGGWETIEMVQKYAHLA 324


>gi|283785697|ref|YP_003365562.1| putative phage integrase [Citrobacter rodentium ICC168]
 gi|282949151|emb|CBG88759.1| putative phage integrase [Citrobacter rodentium ICC168]
          Length = 326

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 80/235 (34%), Gaps = 14/235 (5%)

Query: 96  ESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQE- 151
               ++ IR  G+    ++  + I      R     + S+  + +  +  +F    +   
Sbjct: 83  RQQLEKTIRALGNPAVNRLDKREIARHRGERLTDGISASTINRDVYRLSGMFTALSKLGE 142

Query: 152 YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCR 211
           +   NPC  ++  +     +   TK+++ +   F  EG   R+A    L +G R ++   
Sbjct: 143 FRVENPCHGLQPLREAQPPMTYLTKQEIARLLEFL-EGDNRRVAL-LCLSTGARWNEGST 200

Query: 212 AGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI 271
              + + +   +    K G   TV + +   + +     G   F +N         QF  
Sbjct: 201 LRAEQVNHGRVTFLKTKNGKKRTVPISEALEREIKTCETG-PLFDVN-------YAQFRE 252

Query: 272 WFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
             +         +S H +R   A+     G     L    G  ++ Q   Y   A
Sbjct: 253 QLRRVKPDLPRGQSTHVLRHTFASWFMMNGGNIIALQQIMGHASIKQTMVYAHLA 307


>gi|227487382|ref|ZP_03917698.1| phage integrase family protein [Corynebacterium glucuronolyticum
           ATCC 51867]
 gi|227092606|gb|EEI27918.1| phage integrase family protein [Corynebacterium glucuronolyticum
           ATCC 51867]
          Length = 433

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 53/327 (16%), Positives = 103/327 (31%), Gaps = 48/327 (14%)

Query: 57  KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFE-SYFDQIIRKSGDFDYRKIT 115
           + E     ++   TL      Y        ++  +   +  S+  ++    G+    KIT
Sbjct: 83  REEKEAREKQNQVTLNSFFEHYL---EVHIVSKITERGYRISWDSRVHDSIGNLPVVKIT 139

Query: 116 TKHIRSGVESRKHTPSSA---IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
           +  I +       T  +A       + +  +F  A  +  +  +PC      +R     R
Sbjct: 140 SDDITAWYREMVATHDTAPFNAATYSLVSWVFNLAYEEHIINRSPCEVKNAGRRPQAADR 199

Query: 173 PW-TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----------NNI 221
              T E++        +    +LA     Y  LR  +      + +           +  
Sbjct: 200 TIPTVEELNSLIEHLPK--HYKLAVRVAAYGALRIGEWTTLQRRDVLVTPGAPGELPDVT 257

Query: 222 FSIKTQK---------------------TGTIITVELPDGF-MKLLAMTPIGKET----- 254
             ++  K                     T     V LP    ++L+      K+      
Sbjct: 258 LWVRRGKKENVGQHKVEGKPSRYSGETKTKNQRKVSLPQWLGVELIEHLETMKDKNPQAI 317

Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGW 313
            F N     ++    +   K    KAG+ + S+H +R F  T+ A AG T  ++ A  G 
Sbjct: 318 IFPNVRGGIISTDTCNNVIKRATKKAGLQHMSSHVLRHFGGTMFARAGGTVADIQARLGH 377

Query: 314 KTVDQAETYTKGADRIRLGIKNSRRIS 340
            ++  A TY   ++     + N     
Sbjct: 378 SSIRAAMTYQHASEERDRALANRMSFE 404


>gi|325002054|ref|ZP_08123166.1| integrase family protein [Pseudonocardia sp. P1]
          Length = 264

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 41/264 (15%), Positives = 88/264 (33%), Gaps = 20/264 (7%)

Query: 98  YFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVA 154
           Y + +  +       ++T   IR  +ES       PS+       +     W V +  ++
Sbjct: 2   YCEWLREQGRPETLDELTRSAIRGWLESLIEAGREPSTVRTRFKGLHRFCGWLVAEGDLS 61

Query: 155 INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSC 210
            +P   +E P  + + +   + +++ +             +      FLL +G+R S+ C
Sbjct: 62  EHPMTGMEPPTAQQKPVPVLSDQELDKLVKVCRGRDFTSRRDEAMIRFLLDTGVRVSELC 121

Query: 211 RAGVQHLQNNIFSIKTQKTGTII--------TVELPDGFMKLLAMTP-IGKETFFINNDK 261
              V  +  +  +   +  G  +        TV   D +++          +  ++    
Sbjct: 122 GLSVTDVDLDRETAIVRGKGNKVRAVYPSTKTVRALDQYLRARRAHRWTHLDALWLTQRG 181

Query: 262 QKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
             ++        + +  +AG+ +   H  R   A     +G    +L    GW +    E
Sbjct: 182 -ALSTDGARERVRIRGEQAGIPDLHPHRFRHTFAHDYMVSGGQERDLKRLAGWSSDVMLE 240

Query: 321 TYTKGA--DRIRLGIKNSRRISSV 342
            Y   A   R  L  +   R   V
Sbjct: 241 RYGASAADHRAELAARKMGRGDRV 264


>gi|323136539|ref|ZP_08071621.1| integrase family protein [Methylocystis sp. ATCC 49242]
 gi|322398613|gb|EFY01133.1| integrase family protein [Methylocystis sp. ATCC 49242]
          Length = 419

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 44/295 (14%), Positives = 103/295 (34%), Gaps = 29/295 (9%)

Query: 49  SALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSG 107
           + +      +    +P+++  T+  L+  + +     + +  +  +      + ++   G
Sbjct: 102 AEIAKQREAKRQAKTPQRE--TVAELVDGFLQRMSRKA-SPKTVDATGRLLRREVVAAWG 158

Query: 108 DFDYRKITTKHIRSGVESRKHT-PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
                +++   +R+ +E      P  A + L+++R LF  AV +E +A NP   +E P  
Sbjct: 159 ARPIAEVSRADVRALLECVGERAPVMANRLLSTVRRLFAHAVDEELIARNPAAGIEPPHA 218

Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQ----PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222
           +T   R     D ++  S W    +           L+ +  R S+  R   + +  +  
Sbjct: 219 ETPRERVL---DGRELASVWCAAERLDGEDGDFIRLLILTAARFSEVARLEWREVDLDNG 275

Query: 223 SIK----TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKAT 278
                    K        L    +++L      +    + +D +   ++   I  +  A 
Sbjct: 276 VWTLPAARAKNRKAHVTPLSAPALRILQRLHAAR----VTDDGRVFRSSFSRIRDRIDAE 331

Query: 279 KAGVNK------SAHGVRKFSATISADAGATAHELMATYGWKTVD---QAETYTK 324
            A  +       + H +R+ +AT     G  AH +       +         Y +
Sbjct: 332 IARFDGAPLAHWTPHDLRRTAATNLQSLGVAAHVVEKLLNHASGTFRGIVSIYQR 386


>gi|299142713|ref|ZP_07035842.1| integrase [Prevotella oris C735]
 gi|298575742|gb|EFI47619.1| integrase [Prevotella oris C735]
          Length = 333

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 44/282 (15%), Positives = 104/282 (36%), Gaps = 34/282 (12%)

Query: 74  LISEYRKSAHWGSL----------AVNSRISFESYFDQIIRKSGDFDYRKITTK---HIR 120
           LI+ Y++ + +                +  + ++    + R   D  + +I  K      
Sbjct: 46  LIT-YKEDSSFLDWMEGEIDKETYTAGTIANHKAALAVLRRFKKDITFTQIDYKCICDFE 104

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
           + +++  +  ++  +F+   R     A+ +E + + P       K +    +  T+ +++
Sbjct: 105 NFLKTAGYAINTIAKFMKIFRRFVNLAIDEELMTVYPFRKY-HIKTENVQKQSLTERELR 163

Query: 181 QFKSFW---SEGSQPRLA---FEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTG 230
           + +         ++ R     F F +YSGLR SD  +   QH+    +N    ++ QKT 
Sbjct: 164 RIEEKEVKEELTNEERKVIKGFLFSVYSGLRFSDIVQVTKQHIKNIYRNKWVVMRMQKTD 223

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKM---NATQFSIWFKAKATKAGVNK--S 285
             + + +   F    A      +T       +        + +I  K    +  ++K  +
Sbjct: 224 HEVRIPISKMFGGKAAALVQENKT----TTGKLFQLPCNARCNIVLKRVLKRFNIHKHIT 279

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
            H  R   AT+    G +   +    G +++   + Y+   D
Sbjct: 280 FHCARHTCATVLLGKGVSLPIIQHILGHQSIKTTQVYSAVKD 321


>gi|257437992|ref|ZP_05613747.1| phage integrase [Faecalibacterium prausnitzii A2-165]
 gi|257199652|gb|EEU97936.1| phage integrase [Faecalibacterium prausnitzii A2-165]
          Length = 397

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 63/383 (16%), Positives = 118/383 (30%), Gaps = 74/383 (19%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGH--GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64
           LP +     +  G   Y  R     GRR+ L              A+     K    ++P
Sbjct: 3   LPDY--GTVSMKGTQYYRTRVTDQQGRRVSLYARTREELYQKEQEAIQQIENKTYRRSTP 60

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISF-ESYFDQIIRKSGDFDYRKITTKHIRSGV 123
             +    KWL+ +   SA    + + + I +     + II+  GD     +T   IR  +
Sbjct: 61  TVEEYCEKWLLMQ---SAQ---IRMTTLIDYTSKVKNYIIKPLGDMHMGDVTADDIRLAL 114

Query: 124 ESRKHTPSSAIQFLTSM-RVLFKWAVRQEYVAINPCLSVER--PKRKTEGIRPWTKEDMQ 180
            +     +S  + +  + + +F  A+  + +  NP + +++       +   P T E + 
Sbjct: 115 LAASKKSASVYKSVNVIYKCIFTAAMESKIIDENPTIYLKKNVGGIPQKDRLPLTDEQVD 174

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQ--------- 227
           +       G  P +     LY+GLR  +        +  +      +++           
Sbjct: 175 KLLDAIY-GLPPYVFVMLGLYAGLRREEILGLQWDSVYLDCEAPYLTVRRAWHTEHNRPV 233

Query: 228 -----KTGTIIT-VELPDGFMKLLAMTP--IGKETFFINNDKQKMNATQFSIWF------ 273
                KT      V LPD  ++ L         +    N D   ++ TQF   +      
Sbjct: 234 ILTELKTKAAHRNVPLPDNLLECLREAKKTSTSDYVVANRDGDPLSYTQFKRLWQYIVTR 293

Query: 274 --KAKA-------------------TKAGVNK----------SAHGVRKFSATISADAGA 302
             K +                     KA  N           + H +R    T    A  
Sbjct: 294 TTKERCYYRYEDGKRVKHTVKPVLGQKAAHNGNVVYSLDFEVTPHQLRHTYITNLIHASV 353

Query: 303 TAHELMATYGWKTVDQA-ETYTK 324
               +    G ++     + Y K
Sbjct: 354 DPKTVQYLAGHESSKITMDIYAK 376


>gi|218133860|ref|ZP_03462664.1| hypothetical protein BACPEC_01749 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991235|gb|EEC57241.1| hypothetical protein BACPEC_01749 [Bacteroides pectinophilus ATCC
           43243]
          Length = 248

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/211 (15%), Positives = 70/211 (33%), Gaps = 9/211 (4%)

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                +K +  +       +   F W   ++Y+  +P   + + K  T     ++ E ++
Sbjct: 23  EYQAKKKSSKVTIDNIRRILSSFFSWLEDEDYILKSPVRRIHKVKTGTNIKETYSDEALE 82

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
             +   +E  +     + L  +G+R  +      + +  N         G    +   D 
Sbjct: 83  LMRDNCTE-LRDLAMIDMLASTGMRVGEMVLLNREDIDFNERECVVFGKGDKERIVYFDA 141

Query: 241 -----FMKLLAMTPIGKETFFIN--NDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKF 292
                    L          F++  +   +MN     +  +    + G+NK   H  R+ 
Sbjct: 142 RTKIHLQNYLNSRKDDNPALFVSLQSPHNRMNIGGIEVRLRQLGKRLGLNKVHPHKFRRT 201

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYT 323
            AT++ D G    +L    G + +D    Y 
Sbjct: 202 LATMAIDKGMPIEQLQQLLGHRRIDTTLQYA 232


>gi|13475380|ref|NP_106944.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
 gi|14026132|dbj|BAB52730.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
          Length = 302

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/260 (13%), Positives = 84/260 (32%), Gaps = 21/260 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS--SAIQFLTSMRV 142
              +  ++ ++     ++    G   +   T    R  +E +       +    ++++R 
Sbjct: 24  RRFSQETQRNYLRDIGRLATFLGRSPHTATTDDLRRFQIEQQDDGVPVPTMNSIVSALRF 83

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202
            F   V +     +    + R     +     +++++ +  +  +       A      +
Sbjct: 84  FFTHTVDR----PDLARKLVRLAHPRKLPVVLSRDEVARLLNATTCLKHQ-AALSVAYGA 138

Query: 203 GLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELP--DGFMKLLAMTPIGKETFFINN 259
           GLR ++     V  + +    I+  +  G      +   D  + L     +G++   ++ 
Sbjct: 139 GLRVAEVSALKVADIDSERMLIRVERGKGGRYRNAMLSQDLLLLLRQWWKVGRQQGVMHR 198

Query: 260 DK---------QKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELM 308
           D          + ++  Q        A  A + K    H +R   AT   + G     + 
Sbjct: 199 DGWLFPGQHAMKPISTRQLYRVVVEAAQAADIAKRVGPHTLRHSFATHLLEDGTDIRIIQ 258

Query: 309 ATYGWKTVDQAETYTKGADR 328
              G   ++    YTK A R
Sbjct: 259 VLLGHAKLNSTAFYTKVATR 278


>gi|82544409|ref|YP_408356.1| integrase [Shigella boydii Sb227]
 gi|81245820|gb|ABB66528.1| putative integrase [Shigella boydii Sb227]
          Length = 347

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 53/331 (16%), Positives = 103/331 (31%), Gaps = 32/331 (9%)

Query: 9   PFVTKERTRH-GKIIYYFRKG-HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
             + ++  R  G++ Y ++    G+   L          A  +    +  + EY      
Sbjct: 13  AGLYEKFDRRTGRVYYQYKNPVTGKFHGLGTDKGKAEKIASTANQRIAAAEAEYFMRKID 72

Query: 67  KPTT--------LKWLISEYRKSAHWG----SLAVNSRISFESYFDQIIRKSGDFDYRKI 114
           +  +        LK  +  Y K          +A  +          ++ + G+   +++
Sbjct: 73  ESPSATKRRGIRLKAWVDRYLKIQDTRLKNGDIAATTHKEKTRMAAYLVSRLGNHPLKEL 132

Query: 115 TTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAI--NPCLSVERPKRKTEG 170
             +     ++    K   S+A         ++K A     V    NP  +  +P  K   
Sbjct: 133 EVRDFALILDEWLDKDMVSTARVNRGLWVDIYKEAQHAGEVPPGWNPPEATRKPIPKVTR 192

Query: 171 IRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
            R  T ED Q+  +   E    R A    + +G R  D C      + N    I   KTG
Sbjct: 193 AR-LTMEDWQKIYNATPEKHFIRNAMLLAIVTGQRRDDICHMRFSDVWNEHLHITQGKTG 251

Query: 231 TIITVELPDG-------FMKLLA-MTPIGKETFFINNDK----QKMNATQFSIWFKAKAT 278
             + + L            +++          + I++      + M+    S +F     
Sbjct: 252 MRLALPLTLRCDAIGITLKEVIDGCRDRILSPYLIHSRHQKQPKPMSKDNLSDYFAKARD 311

Query: 279 KAGVNKSAHGVR-KFSATISADAGATAHELM 308
            AG+      +R  F        G T H + 
Sbjct: 312 LAGIFHQQEKLRQHFMNNALYQNGCTVHRVS 342


>gi|220935866|ref|YP_002514765.1| integron integrase [Thioalkalivibrio sp. HL-EbGR7]
 gi|219997176|gb|ACL73778.1| integron integrase [Thioalkalivibrio sp. HL-EbGR7]
          Length = 323

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 41/315 (13%), Positives = 91/315 (28%), Gaps = 62/315 (19%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT---- 129
           L+ + R+       ++ +  ++  +  + I   G      +    + + +          
Sbjct: 9   LLDQVRERCRVRHYSLRTEQAYTHWIRRYILFHGKRHPLDMGAPQVEAFLTHLAVQEDVA 68

Query: 130 PSSAIQFLTSMRVLFK--WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           PS+  Q L  +  L++    +   ++       V R K+         +++++   +   
Sbjct: 69  PSTQNQALAGILFLYRDVLGIELPWLD-----GVTRAKKPPRLPVVLNRDEVRALLAQLD 123

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLL 245
            G    LA   +  SGLR  ++ R  V+ +       +++  K G      LP   ++ L
Sbjct: 124 -GMYWLLA-SLMYGSGLRLMEALRLRVKDVDLERREVTVREGKGGKDRRTMLPGTLVEPL 181

Query: 246 AMTPIGKETFFIN---------------------------------------------ND 260
                                                                       
Sbjct: 182 TRQREKVAAIHALDRDNNLAAVYLPHALSRKYPNAGKELAWQFLFPASQPGIDPRSGIRR 241

Query: 261 KQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           +  ++ +      K     AG+    S+H +R   AT   + G     +    G   V  
Sbjct: 242 RHHLHESAVQRAIKGAVRAAGILKPASSHTLRHSFATHLLEDGYDIRTVQELLGHSDVRT 301

Query: 319 AETYTKGADRIRLGI 333
            + YT   +R  L +
Sbjct: 302 TQIYTHVLNRGGLAV 316


>gi|150006960|ref|YP_001301703.1| integrase [Parabacteroides distasonis ATCC 8503]
 gi|298377388|ref|ZP_06987341.1| tyrosine site-specific recombinase [Bacteroides sp. 3_1_19]
 gi|149935384|gb|ABR42081.1| integrase [Parabacteroides distasonis ATCC 8503]
 gi|298265802|gb|EFI07462.1| tyrosine site-specific recombinase [Bacteroides sp. 3_1_19]
          Length = 310

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 44/277 (15%), Positives = 96/277 (34%), Gaps = 31/277 (11%)

Query: 96  ESYFDQIIRK-----SGDFDYRKITTKH---IRSGVESRKHTPSSAIQFLTSMRVLFKWA 147
           +SY D +          +  Y  I  +     ++ +  R    ++   ++  +R ++  A
Sbjct: 27  KSYLDALRSFKCFCGMEEIPYAYIDKERLLLYQAWLSKRGCMRNTVSTYMRRIRHIYNLA 86

Query: 148 VRQEYVA--INPCLSVERPKRKTEGIRPWTKEDMQQFK---SFWSEGSQPRLAFEFLL-Y 201
           V    V+   N    V     +++  +    + ++          E  + +L F  +  +
Sbjct: 87  VEAGEVSYIPNLFKGV-FTGVESKRKKALPLDCLRSLMGTPRVEPEMRRTQLCFCLMFSF 145

Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG----FMKLLAMTPIGKETFFI 257
           SG+   D      +++++ + S   QK+G+ I VE+P        +L   T       F 
Sbjct: 146 SGMAFVDFAHLRKENVKDGVLSYHRQKSGSFIRVEIPADVRLLLDELAVCTDKDSPYLFP 205

Query: 258 NNDKQKMNATQFS------IWF-KAKATKA-----GVNKSAHGVRKFSATISADAGATAH 305
               +K     ++      + F +   + A     G   +++ +R   AT   +      
Sbjct: 206 FLSGKKTGEAAYAEYNGALLRFNRDLRSLAETCGVGEPVTSYTIRHSFATTLKEQDVPIE 265

Query: 306 ELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
            +    G  ++   + Y K     RL   N     SV
Sbjct: 266 MISELLGHTSIKTTQIYLKSFSLERLSAVNRACFESV 302


>gi|108861476|gb|ABG21674.1| class 2 integrase [Providencia stuartii]
 gi|108861489|gb|ABG21686.1| class 2 integrase [Providencia stuartii]
          Length = 325

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 40/297 (13%), Positives = 81/297 (27%), Gaps = 55/297 (18%)

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLT 138
           R        A+ +  ++  +  + I        + + ++ +R  + S  ++   AI    
Sbjct: 11  RTDMRQKGYALKTEKTYLHWIKRFILFHKKRHPQTMGSEEVRLFLSSLANSRHVAINTQK 70

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPK--RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196
                  +   +      P   ++     +        +  ++Q+        ++ ++ F
Sbjct: 71  IALNALAFLYNRFLQQ--PLGDIDYIPASKPRRLPSVISANEVQRILQVMD--TRNQVIF 126

Query: 197 EFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254
             L  +GLR ++  R  V+     N   ++   K G      LP   +  +         
Sbjct: 127 ALLYGAGLRINECLRLRVKDFDFDNGCITVHDGKGGKSRNSLLPTRLISAIKQLIEQARL 186

Query: 255 F--------------FINNDKQKMNATQFSIWF--------------------------- 273
                          F  + K      Q +  F                           
Sbjct: 187 IQQDDNLQGVGPSLPFALDRKYPSAYRQAAWMFVFPSSTLCNHPYNGKLCRHHLHDSVAR 246

Query: 274 ---KAKATKAGV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              KA   KAG+     + H  R   AT    AG     +    G   V   + YT 
Sbjct: 247 KALKAAVQKAGIVSKRVTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTH 303


>gi|55709836|gb|AAV58821.1| integrase [Clostridium sp. CCRI-9842]
          Length = 397

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 49/302 (16%), Positives = 91/302 (30%), Gaps = 53/302 (17%)

Query: 85  GSLAVNSRISFESYFDQII-RKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSM 140
           G++  N+++  E     +   + G      +     +      K       +      S+
Sbjct: 96  GNVKHNTKLGRERLMRILEQDRLGSCPIDSVKLSDAKEWALRMKEKGLSYKTINNDKRSL 155

Query: 141 RVLFKWAVRQEYVAINPC--LSVERPKRKTEGIRPWTKEDMQQFKSF---WSEGSQPRLA 195
           +  F  A+  + +  NP      +     TE   P T    + F SF        +   A
Sbjct: 156 KAAFYTAILDDCIRKNPFDFQLSDVLDDDTEPKVPLTPAQEESFLSFIQGDKVYQKHYDA 215

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQ----------------NNIFSIKTQKTGTIIT-VELP 238
              LL +GLR S+ C    + L                    + I   KT + +  + + 
Sbjct: 216 IVILLGTGLRISELCGLTDKDLDFENRVIIVSHQLLRNTGVGYYIDEPKTQSGVRKIPMN 275

Query: 239 DG----FMKLLAMTPIGKETF--------FINNDKQKMNATQFSIWFKA------KATKA 280
           +     F +++      K           F+  +   M A  +   F        K+ + 
Sbjct: 276 EEVYQAFQRVIKNRKGAKPFIIDGYANFLFLKQNGYPMTAVDYGGMFGRLVKKYNKSHEE 335

Query: 281 GVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETY-------TKGADRIRL 331
            + K+   H +R    T  A+AG     L    G   +     Y       +  A+  RL
Sbjct: 336 ALPKTTTPHAMRHTFCTRLANAGMNPKALQYIMGHSNITMTLNYYAHATFDSARAEMERL 395

Query: 332 GI 333
             
Sbjct: 396 AA 397


>gi|295318249|gb|ADF98626.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum F str. 230613]
          Length = 264

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/188 (15%), Positives = 63/188 (33%), Gaps = 12/188 (6%)

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
           S   +P +  + + S+R  +K+   +   +  N    +E PK      +    E+  +  
Sbjct: 45  SLNSSPGTRARKIVSIRQFWKYLKTKAHLIDNNIAEELETPKLPKRIPKYLNSEESVRLL 104

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
               +  +        L   LR S+     +  + N+I S+   K      + L     K
Sbjct: 105 LECKKSPRDHCIITIFLNCALRLSELASLNIDQVDNDILSV-VGKDTKERKIFLTPAAKK 163

Query: 244 LLAMTP-------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFS 293
            +           +     FI+ +  ++         K     +G++    S H +R  +
Sbjct: 164 AINDWLHIRNSINVNTNALFISRNSNRITTRAIQNIVKKYVITSGLDPKSISTHKLRHTA 223

Query: 294 ATISADAG 301
           AT+    G
Sbjct: 224 ATLMYKYG 231


>gi|262382525|ref|ZP_06075662.1| integrase [Bacteroides sp. 2_1_33B]
 gi|262295403|gb|EEY83334.1| integrase [Bacteroides sp. 2_1_33B]
          Length = 310

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 44/287 (15%), Positives = 98/287 (34%), Gaps = 36/287 (12%)

Query: 90  NSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLF 144
           ++  S++             +       + T    +S + ++    ++   ++  +R ++
Sbjct: 24  STAKSYQDALRSFKCFCGREEIPYAYINRDTLLRYQSWLLAKGCARNTVSTYMRRIRHIY 83

Query: 145 KWAVRQE------YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS---FWSEGSQPRLA 195
             AV         ++  N    VE  ++K         E ++   +      +  + + A
Sbjct: 84  NLAVEVGEAAYIPHLFKNVFTGVESKRKK-----ALPSESLRLLMTSPVTDPQQKRTQSA 138

Query: 196 FEFL-LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG----FMKLLAMTPI 250
           F  + L+ G+   D      + ++  I S   QK+G++I VE+P        +L A T  
Sbjct: 139 FCLMFLFCGMAFVDLAHLRKEDIKEGILSYYRQKSGSLIQVEIPAEAQGLLNELAADTTE 198

Query: 251 GKETFFINNDKQKMNAT----------QFSIWFKAKATKAGVN--KSAHGVRKFSATISA 298
                F   +  K               F+   K  +   G++   +++ +R   AT   
Sbjct: 199 DSPYLFPFLEGMKTGEDAYKEYNTVLGGFNRRLKILSESIGIHTRVTSYTIRHSFATTLK 258

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345
           +       +    G K++   + Y K     +L   N     SV + 
Sbjct: 259 EQNVPIEMISELLGHKSIKTTQIYLKSFSLEKLSTVNKLCFESVYNY 305


>gi|253700090|ref|YP_003021279.1| integrase family protein [Geobacter sp. M21]
 gi|251774940|gb|ACT17521.1| integrase family protein [Geobacter sp. M21]
          Length = 334

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/263 (16%), Positives = 88/263 (33%), Gaps = 38/263 (14%)

Query: 83  HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR---SGVESRKHTPSSAIQFLTS 139
            W       +       ++++   GD    KI  + I+     +E      ++  ++L +
Sbjct: 74  RWKDNKDGDKSQ--RIAERVMYLIGDVPISKIDEETIKLLVRLLEGSGVKGATVNRYLAT 131

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED---MQQFKSFWSEGSQPRLAF 196
           ++ L ++          P   ++  K     IR  ++E+   +         GS+ RL F
Sbjct: 132 VKTLLRY-------HRQPWEHIQLKKESKGRIRVISREEEAMVVNLLRDTDHGSR-RLYF 183

Query: 197 -------EFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
                  E L  +G R S+    G + +    N+ ++   K     ++ + +    +L  
Sbjct: 184 PEVADLVEVLADTGCRLSEVLNLGYEDINFDTNLITVWINKGDKPRSIPMTNRVGGILQA 243

Query: 248 TPIGKETFFINNDKQKMN-----ATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG 301
             +G          +              W + K   AG  +   H +R  +AT   D G
Sbjct: 244 RQVGNPL-------KPFTIDIDKVETAWKWVRKKMGLAGDPEFVPHALRHTTATRLIDGG 296

Query: 302 ATAHELMATYGWKTVDQAETYTK 324
              + +    G  T+   E Y  
Sbjct: 297 IDLYTVKEWLGHSTIQVTERYAH 319


>gi|168204762|ref|ZP_02630767.1| prophage LambdaCh01, site-specific recombinase, phage integrase
           family [Clostridium perfringens E str. JGS1987]
 gi|170663693|gb|EDT16376.1| prophage LambdaCh01, site-specific recombinase, phage integrase
           family [Clostridium perfringens E str. JGS1987]
          Length = 386

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 53/327 (16%), Positives = 104/327 (31%), Gaps = 58/327 (17%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKH- 128
           LK  +  + K     +   N+   +ES   + I    G+   + +   HI S + S K  
Sbjct: 62  LKDYLENWLKQYIKPTRKENTYYRYESIIKNSINPIIGNVQLKNLKAIHIESMLNSNKEK 121

Query: 129 --TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             T ++     T +      AV+ + +  N C  V+RPKR+       + E+     +  
Sbjct: 122 NLTNTTLQNIYTVLNAALNRAVKLQLINNNVCKFVDRPKRERFIAETLSIEEFNYILNSL 181

Query: 187 SEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQ---------------NNIFSIKTQK 228
           S+       +LA    L  GLR  +       ++                    ++ T K
Sbjct: 182 SDSYNDYLMKLALTITLELGLRRGELAGLTWDNIDLKNNKIKIINNLIKTGKGVTVTTPK 241

Query: 229 T-GTIITVELPDGFMKLLAMTPIGKETFFINN---DKQKMNATQF--------------- 269
           T  +  T+ + D  + +L       +     N     +      F               
Sbjct: 242 TEESKRTLIISDTLVSMLK----QHKKILNQNKLKYGEFYTKDNFFNNKKYDFIFVWENG 297

Query: 270 --------SIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
                   +  F        +NK    H +R  +AT+    G     +    G   ++  
Sbjct: 298 IYVDPNYWTHRFGRILKSLNINKKIRWHDLRHTNATLLLSQGVNFKTIQIRLGHADINTT 357

Query: 320 -ETYTKGADRIRLGIKNSRRISSVVDS 345
              Y+   +   +    + +IS+++ S
Sbjct: 358 LNIYSHVTE--EMQKDATNKISNLMKS 382


>gi|168181351|ref|ZP_02616015.1| phage integrase [Clostridium botulinum Bf]
 gi|182675514|gb|EDT87475.1| phage integrase [Clostridium botulinum Bf]
          Length = 390

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 40/303 (13%), Positives = 92/303 (30%), Gaps = 60/303 (19%)

Query: 85  GSLAVNSRISFESYFDQIIRK-----SGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
           G +   S   +E  F   I K           + I  +   + +     + +        
Sbjct: 80  GQIKPTSFARYEGIFSNYIEKSPIACISLEKLQPIDIQRYYNTLFKSGKSSNIINNLNKL 139

Query: 140 MRVLFKWAVRQEYVAINPCLSVE-------RPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
           ++    + V   Y+  NPC   +       + +R+ + +  ++++++        E ++ 
Sbjct: 140 LKQFLNYCVDSGYILKNPCDGKKVIIPKDNKIRRENKILPIFSRDEVINIL-RQKEDTKI 198

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKT-----------QKTG--------- 230
           R        +G+R  +        +   NN   I+             K           
Sbjct: 199 RYISLISYATGMRKGEILGLKESDIDYTNNEIHIRRAMVTTYIFDENGKKHKETFLDDTK 258

Query: 231 ---TIITVELPDGFMKLLAMTPI----------------GKETFFINNDK---QKMNATQ 268
              +   + LP   + ++                      K+  F++ +    +  N  +
Sbjct: 259 TYTSERDIPLPKSLIPIINAAISLKKRDILKAGNSFNENNKDLLFLSENGEYIEASNIDK 318

Query: 269 FSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGAD 327
             I+F  +      +K  H +R   ATI  +       +    G  ++D  A TYT    
Sbjct: 319 SWIYFLKRCRVN--HKKFHALRHTYATIQFENEIPLLTISKLLGHASIDITASTYTHVMK 376

Query: 328 RIR 330
           + +
Sbjct: 377 KEK 379


>gi|331018714|gb|EGH98770.1| integrase/recombinase XerD, putative [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 320

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 47/276 (17%), Positives = 84/276 (30%), Gaps = 34/276 (12%)

Query: 89  VNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVE--SRKHTPSSAIQFLTSMRVL 143
            N+R ++    ++        G  D   +   H+ + +E   ++    S  Q L ++R L
Sbjct: 40  PNTRRAYARAANEFLTWCADIGVPDLATVAPLHVSTWIELQMQRLAAPSVKQRLAALRHL 99

Query: 144 FKWAVRQEYVAINPCLSVERPKR--KTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFE 197
           F W V  + V  NP  SV  P    +T         + +Q           G + R    
Sbjct: 100 FDWLVVGQVVPNNPAASVRGPSHSARTGKTPVLDPSEARQLLDSIDVSTPAGLRDRALIA 159

Query: 198 FLLYSGLRCSDSCRAGVQHL---QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG--- 251
            +++S  R   +    V+ +      ++ +  +K G    +         L     G   
Sbjct: 160 LMVFSFARIGAALAMRVEDVYTQNRRLWVLLKEKGGKQHAMPCHHSLEAYLHAYLSGTGI 219

Query: 252 ----KETFFINNDKQKMNATQFS-------IWFKAKATKAGVNKSA--HGVRKFSATISA 298
               K   F    +     +  +          + +A  AG+      H  R    T   
Sbjct: 220 DTDLKGPLFRTVGRGTSQLSTTALPQANAHAMVRRRALAAGIKTQIGNHTFRATGITAYL 279

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLGIK 334
             G T     A     +    + Y    DR R  I 
Sbjct: 280 KNGGTLENAAAMANHASTRTTQLY----DRRREDIS 311


>gi|295407330|ref|ZP_06817128.1| phage integrase [Staphylococcus aureus A8819]
 gi|297246409|ref|ZP_06930251.1| phage integrase [Staphylococcus aureus A8796]
 gi|294967775|gb|EFG43806.1| phage integrase [Staphylococcus aureus A8819]
 gi|297176680|gb|EFH35941.1| phage integrase [Staphylococcus aureus A8796]
          Length = 353

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 52/333 (15%), Positives = 114/333 (34%), Gaps = 28/333 (8%)

Query: 13  KERTR--HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT- 69
           + +TR   GK   Y  K  G+R R               A +    K   + S       
Sbjct: 8   RMKTRCYDGKKWQYEFKYEGKRYRKKGFRTK------REANSAGLDKLNELRSGFNIDNY 61

Query: 70  -TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRSGVE--S 125
            TL+     + K+     +  N+   + +    I + K G  +  KI  +  +  +   S
Sbjct: 62  ITLEEYFENWIKTYKQPVVKENTYRHYRNALQHIQKHKIGKMELSKINRQVYQKFINDYS 121

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV-----ERPKRKTEGIRPWTKEDMQ 180
           ++H   +  +   ++R     A+    +  NP   V     +  K + E     T+ ++ 
Sbjct: 122 KEHAKETIRKTNGAIRSALDDALYDGLIFKNPAYKVNYKAGKPTKSEQEKFISVTEYEIL 181

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTG-TIITVEL 237
           +      + ++  LA   ++ +G R S +    ++H+    N   I  +KT  +   + +
Sbjct: 182 K-DHVRKKRTRSSLALFIMICTGCRVSGARNIKIEHINQVKNTIFIDERKTDTSPRYISI 240

Query: 238 PDG----FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKF 292
                   M +++   I  + +        +N    +   K+      +   ++H +R  
Sbjct: 241 AKSDMKHIMDVISTFAISYDGYIFKEAGSIINLQAINNALKSACRVNNIPIITSHALRHT 300

Query: 293 SATISADAGATAHELMATYGWKTVD-QAETYTK 324
             +     G + H +    G K +      Y+ 
Sbjct: 301 HCSYLLAKGVSIHYISKRLGHKNIAITTSVYSH 333


>gi|299140880|ref|ZP_07034018.1| integrase [Prevotella oris C735]
 gi|298577846|gb|EFI49714.1| integrase [Prevotella oris C735]
          Length = 409

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 41/253 (16%), Positives = 81/253 (32%), Gaps = 22/253 (8%)

Query: 89  VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG----VESRKHTPSSAIQFLTSMRVLF 144
            ++R   + +  +      D  +  +T   I       +    H  S+  +    ++ + 
Sbjct: 138 HSTRKRLQEFIQK-KYHVSDLAFSLLTENFIYELQTFCLGGLGHQQSTFFRIAADLKTVC 196

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-----FKSFWSEGSQPRLAFEFL 199
           + A R+         +V   +   +  +   KE + +     F     E    R  F F 
Sbjct: 197 RLAYREGLADTLLFDNVHIERGNKKAPKALDKEALDKLKALRFDELEKEMETARDVFLFA 256

Query: 200 LYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254
            Y+G    D      +HL  +           QKTG +  ++L    ++L+      +  
Sbjct: 257 CYTGAAYCDLMELSKEHLVRDDAGSLWLKFNRQKTGVLCRIKLLPEAIRLIEKMHSDERE 316

Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS-ADAGATAHELMATY 311
             +      M    +    KA   +A +    ++H  R   AT+   + G     +    
Sbjct: 317 TLL----PFMGYKNYQSCLKALRLRADISFPFTSHTARHTFATLITLEQGVPIETVSKML 372

Query: 312 GWKTVDQAETYTK 324
           G   V   E Y K
Sbjct: 373 GHTNVSMTERYAK 385


>gi|293371786|ref|ZP_06618196.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|292633238|gb|EFF51809.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
          Length = 456

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 48/279 (17%), Positives = 86/279 (30%), Gaps = 39/279 (13%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRKITT---KHIRSGVESRKHTPSSAIQFLTSMRV 142
            +A   + +  S    I R   D    ++ +   +     + S   + ++   +L ++R 
Sbjct: 182 GMAAAYKSTRSSLAKFISR--PDVRMSEVDSAFVRRYEDFLYSNGSSGNTVSYYLRNLRS 239

Query: 143 LFKWAVRQEY----------VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
           L+  AV   Y              P  +V+R           ++ DMQ       E    
Sbjct: 240 LYNQAVADGYHPRGEYPFAKAQTRPAKTVKR---------ALSRTDMQNLADLNLENEPE 290

Query: 193 R-LAFEFLLYS----GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
              A +  L+S    G+   D        + N + +    K+  +I + +      L+  
Sbjct: 291 LEFARDLYLFSFYAQGMAFVDIVLLRKSDICNGVLTYSRHKSKQLIRIAVTPQMQGLMDK 350

Query: 248 TPIGKETFFIN-----NDKQKMNATQFSIW---FKAKATKAGVN--KSAHGVRKFSATIS 297
                E  F           K             K  A  A +    + +  R   AT++
Sbjct: 351 YKTENEYLFPIISGEYASGYKQYRLALGRINRHLKKIAVAADIKVALTTYTARHTWATLA 410

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
            D GA    + A  G  + +    Y K  D   L   NS
Sbjct: 411 RDYGAPISVISAGLGHTSEEMTRVYLKDFDVSMLNQVNS 449


>gi|239907662|ref|YP_002954403.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
 gi|239797528|dbj|BAH76517.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
          Length = 352

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 50/300 (16%), Positives = 101/300 (33%), Gaps = 17/300 (5%)

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYR 112
           STP+             L  L   Y  +       V +     S+    +I         
Sbjct: 58  STPEAISEVVAVADKIYLDQLAQIYINTRKVEGTTVKTLNEIRSFLKKHLIPVFAQRPID 117

Query: 113 KITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170
           +I    I + V      H+P +  ++L+ ++ +F++ V+Q+ +  NP    ++ K     
Sbjct: 118 EIRYDEILTIVGKAYADHSPVTRGRYLSYLKTVFQFGVKQDLIEKNPLRHWKKAKEHPRD 177

Query: 171 IRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD--SCRAGVQHLQNNIFSIKT-- 226
            +  T  D+ + K+  +       A E     G+R  +          +     ++K   
Sbjct: 178 TK-LTVADLMKIKAVAAPHLA--WAIEVAWNLGVRTGESELFALKWADVDWAQSTVKVFA 234

Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKET-FFINNDKQKMNATQFSIWFKAKATKAGVNKS 285
            KT +   + +   FM  L       +T + I    +     QF + F++   +A +   
Sbjct: 235 TKTQSARVIPISPEFMARLREMQGRAKTEYLIEYAGRP--VKQFRMSFRSACKRAEIPYH 292

Query: 286 --AHGVRKFSATISADAGATAHELMATYGWKTVDQA--ETYTKGADRIRLGIKNSRRISS 341
              + +R   AT     G     +    G  +V     + Y    D  R  I     +++
Sbjct: 293 VVLYDIRHLFATTLLQEGGDLSAVSKLMGHSSVHMTANQYYHLLGDEKRRTIAKLPSLNA 352


>gi|226356030|ref|YP_002785770.1| phage integrase [Deinococcus deserti VCD115]
 gi|226318020|gb|ACO46016.1| putative phage integrase [Deinococcus deserti VCD115]
          Length = 387

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 54/326 (16%), Positives = 94/326 (28%), Gaps = 45/326 (13%)

Query: 34  RLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT-TLKWLISEYRKSAHWGSLAVNSR 92
           R       +     + A                 P  T+  LI E+        ++  + 
Sbjct: 35  RKRLTGRFSGTEKELRAFMQKVKLEAKGQGVSADPGMTVNTLIEEWL-DGKAQEVSARTA 93

Query: 93  ISFESY-FDQIIRKSGDFDYRKITTKHIRSGV-ESRKHT--PSSAIQFLTSMRVLFKWAV 148
             +       I  + G    R +    ++    + R+ T    + +Q    +R     AV
Sbjct: 94  SIYRGVFLRHIRPRIGGTKVRALDAARLKGFYTDLRRDTDLERTRVQIHLVLRQALDHAV 153

Query: 149 RQEYVAINPCL--------SVERPKRKTEGIRP-WTKEDMQQFKSFWSEGSQPRLA-FEF 198
               +  NP          +V R      G  P WT E+  +  +   E   P       
Sbjct: 154 LTGVILSNPAKVVRPATAKAVRREALADAGDVPAWTHEEASKLFAVAMEDRSPFGWAVAL 213

Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT----------------GTIITVELPDGFM 242
            L +GLR  +        +     ++K                     +   V L +  +
Sbjct: 214 GLQTGLRRGELLGLKWSAVDLAGKTLKVVGNLTENDGHRAVGNPKTRESRRVVPLSEEAV 273

Query: 243 KLLAMTP------------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGV 289
           ++L                 G +  F   D +  + +  +   KA  TKAGV   S H  
Sbjct: 274 RVLKAVREWRDLESTRPGWGGTDFVFPTVDGKMQHPSNINRKVKALTTKAGVRYLSMHAT 333

Query: 290 RKFSATISADAGATAHELMATYGWKT 315
           R    T+ A  G +   +    G KT
Sbjct: 334 RHTFVTLLAATGVSLQHISKLIGHKT 359


>gi|183602443|ref|ZP_02963809.1| phage-related integrase [Bifidobacterium animalis subsp. lactis
           HN019]
 gi|219683244|ref|YP_002469627.1| phage-related integrase [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|241191203|ref|YP_002968597.1| phage-related integrase [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|241196609|ref|YP_002970164.1| phage-related integrase [Bifidobacterium animalis subsp. lactis DSM
           10140]
 gi|183218362|gb|EDT89007.1| phage-related integrase [Bifidobacterium animalis subsp. lactis
           HN019]
 gi|219620894|gb|ACL29051.1| phage-related integrase [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|240249595|gb|ACS46535.1| phage-related integrase [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|240251163|gb|ACS48102.1| phage-related integrase [Bifidobacterium animalis subsp. lactis DSM
           10140]
 gi|289177317|gb|ADC84563.1| DNA integration/recombination/inversion protein [Bifidobacterium
           animalis subsp. lactis BB-12]
 gi|295794196|gb|ADG33731.1| phage-related integrase [Bifidobacterium animalis subsp. lactis V9]
          Length = 366

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 48/327 (14%), Positives = 106/327 (32%), Gaps = 36/327 (11%)

Query: 24  YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT-LKWLISEYRKSA 82
            +R   GR  R           A  +A      K +     +    T +  L   + ++ 
Sbjct: 19  RYRTPGGRTTRKRGFLRKMDAEA-WAAENVEIAKAKGTFITQSAGNTPVAELWQSWIETK 77

Query: 83  HWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRK--HTPSSAIQFLTS 139
                  +   S    ++  +  + G      I    ++  V      ++ S  I+    
Sbjct: 78  R-TRCKPSYMESLGGAWNKHVGPQWGARKVGSIRHDEVQEWVNKLAGEYSASVVIRARDM 136

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199
           ++ L K AV+   +A NP   +  P++K +     T    +Q  +   E    R A   L
Sbjct: 137 LKGLLKAAVKNRLIASNPADDITVPRKKRKDHVYLTA---EQLMALADEAGWRRPAVLAL 193

Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII------------------TVELPDGF 241
             +G+R  +     V+ L      ++ ++    +                     + +  
Sbjct: 194 GTTGMRWGELVGLRVRDLDAKGHRLRIERNAVEVKGEVVIGTPKTYEKRTITYPAILEPM 253

Query: 242 MKLLAMTPIGKETFFINNDKQ-------KMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292
           +  +A    G E  F++   +         + + +  W K +A    + +  + H +R  
Sbjct: 254 LVEMAQGRDGDEPLFVDQQGKMLRRTHGPNSPSSWFYWAKKRALGDVLARKMTVHDLRHT 313

Query: 293 SATISADAGATAHELMATYGWKTVDQA 319
           +A++   AGA    +    G ++    
Sbjct: 314 AASLLVSAGANVKVVQRQLGHESAAMT 340


>gi|56392785|gb|AAV87153.1| integrase [Streptococcus pyogenes]
          Length = 387

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 41/287 (14%), Positives = 87/287 (30%), Gaps = 37/287 (12%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           T K L   + ++            +       I+   G+    KIT   I+  +      
Sbjct: 75  TFKELSHLWLETYKLTVKPQTYDATVTRLNRHIMPTLGNMKVDKITASDIQMLINRLSKY 134

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK---TEGIRPWTKEDMQQFKSFW 186
             +     + +R + +  V    +  N    +  P+++    + ++     D++ F    
Sbjct: 135 YVNYTAVRSVIRKVLQQGVLLGLIDYNSARDIILPRKQPNAKKKVKFIDPSDLKSFLEHL 194

Query: 187 SEGSQPR-------LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT---------- 229
                 R       + ++ LL +GLR  ++C      +     +I   KT          
Sbjct: 195 ETSQHKRYNLYFDAVLYQLLLSTGLRIGEACALEWGDIDLENGTIAINKTYNKNLKFLST 254

Query: 230 -----GTIITVELPDGFMKLL-----------AMTPIGKETFFINNDKQKMNATQFSIWF 273
                G  +          L             +     E  F    ++  NA+      
Sbjct: 255 AKTQSGNRVISVDKKTLRSLKLYQMRQRQLFNEVGARVSEVVFATPTRKYFNASVRQSAL 314

Query: 274 KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
             +  +AG+ + + H  R   A++  +AG +  EL    G   +   
Sbjct: 315 DTRCKEAGIERFTFHAFRHTHASLLLNAGISYKELQYRLGHANISMT 361


>gi|295096368|emb|CBK85458.1| Integrase [Enterobacter cloacae subsp. cloacae NCTC 9394]
          Length = 446

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 53/339 (15%), Positives = 105/339 (30%), Gaps = 78/339 (23%)

Query: 81  SAHWGSL-----AVNSRISFESYFDQIIRKSGDFDYR-------------------KITT 116
           S  W  L     + N+   +ES    ++ + G+                        +  
Sbjct: 104 SERWSELKRMEISSNTMSRYESIIKNMLPRIGENKMVSAVTTEDLLYVRKELLTGFHVMK 163

Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
           K  R+ V+ RK   S+   ++  M  +F++A    Y   NP   + R ++  +   P T 
Sbjct: 164 KDHRTQVKGRKS--STVNNYMMLMAEIFQFAADNGYAKENPFSGINRLRKAKDEPDPLTT 221

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------- 229
           ++  +F        Q R  +   +Y+G+R  + C    + +     +I  ++        
Sbjct: 222 DEFIRFIQACG-HQQMRNLWTVAVYTGMRHGELCGLAWEDIDLTAGTITVKRNLTQTYEF 280

Query: 230 -------GTIITV----ELPDGFMKLLAMTPIGKE------------------TFFIN-- 258
                  GT   +       D       +T +G++                  TF  +  
Sbjct: 281 TLPKTEAGTDRVIYLIQPAIDALRNQAQLTRLGRQFEVEVKLREYGQSVIQPCTFVFSPQ 340

Query: 259 ------NDKQKMNATQFSIWFKAKATKAGVNKS-AHGVRKFSATISADAGATAHELMATY 311
                            +  +     +AG+    A+  R   A  S  AGA  + +    
Sbjct: 341 CVKRGPRTGYHYAVNSINKIWAPIIKRAGIRYRNAYQSRHTYACWSLSAGANPNFIATQM 400

Query: 312 GWKTVDQA-ETYT-----KGADRIRLGIKNSRRISSVVD 344
           G        + Y      K AD++ L  +   R +  + 
Sbjct: 401 GHTDAQMVYKVYGKWMSEKSADQVSLLNQTLSRFAPSLP 439


>gi|259503519|ref|ZP_05746421.1| conserved hypothetical protein [Lactobacillus antri DSM 16041]
 gi|259168597|gb|EEW53092.1| conserved hypothetical protein [Lactobacillus antri DSM 16041]
          Length = 376

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 50/303 (16%), Positives = 104/303 (34%), Gaps = 47/303 (15%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYF---DQIIRKSGDFDY-RKITTKHIRSGVES 125
           TL  ++ EY K +     +   R ++ ++      +    GD     KIT K I   +ES
Sbjct: 67  TLGQVLDEYEKESS----SRIRRSTYYNHLTMAKNMRATIGDDALIEKITPKVITKFIES 122

Query: 126 -----RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER-PKRKTEG----IRPWT 175
                +  +   A ++      + ++A++Q YV  NP   VE   K    G     +   
Sbjct: 123 LMYGDKNISSGYASKYKYFCHTIMEYALKQNYVKNNPVDKVEIDYKTPVSGVKIQNKFLE 182

Query: 176 KEDMQQFKSFWSEGSQPRLAF-EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-- 232
           + +++    +    +       E+L  +G R  ++       +  N        TGT+  
Sbjct: 183 QSELETLLKYAYAHNTTYAQLCEWLYLTGSRIGEATSLNFDDVHQNGNHWVVDITGTLDY 242

Query: 233 --------------------ITVELPDGFMKLLA---MTPIGKETFFINNDKQKMNATQF 269
                                +V LP+  +K+         G    F  ++   + ++  
Sbjct: 243 DHVKITDQKKAANPKTASSVRSVILPEKALKIYQDRIAETGGNGFIFCTSNGTPVQSSAL 302

Query: 270 SIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGA 326
           + + +A   K  ++K  S+H  R    +  A+ G   + +    G        + Y    
Sbjct: 303 NSFLRAAKKKLKIDKPLSSHIFRHTHISKLAELGVPIYIIQQRVGHADSKVTRQIYLHVT 362

Query: 327 DRI 329
           ++ 
Sbjct: 363 EKA 365


>gi|258543107|ref|YP_003188540.1| phage DNA recombinase [Acetobacter pasteurianus IFO 3283-01]
 gi|256634185|dbj|BAI00161.1| phage DNA recombinase [Acetobacter pasteurianus IFO 3283-01]
 gi|256637245|dbj|BAI03214.1| phage DNA recombinase [Acetobacter pasteurianus IFO 3283-03]
 gi|256640297|dbj|BAI06259.1| phage DNA recombinase [Acetobacter pasteurianus IFO 3283-07]
 gi|256643354|dbj|BAI09309.1| phage DNA recombinase [Acetobacter pasteurianus IFO 3283-22]
 gi|256646409|dbj|BAI12357.1| phage DNA recombinase [Acetobacter pasteurianus IFO 3283-26]
 gi|256649462|dbj|BAI15403.1| phage DNA recombinase [Acetobacter pasteurianus IFO 3283-32]
 gi|256652448|dbj|BAI18382.1| phage DNA recombinase [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256655506|dbj|BAI21433.1| phage DNA recombinase [Acetobacter pasteurianus IFO 3283-12]
          Length = 335

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 54/328 (16%), Positives = 108/328 (32%), Gaps = 29/328 (8%)

Query: 17  RHGKIIYYFRKGHGRRIRLPYPHESTFIP-AYMSALTGSTPKREYINSPRKKPTTLKWLI 75
           + G+         G+R+   +  ++     A  S     +  +    +P     ++  L 
Sbjct: 6   KRGRSWRAMIVRKGQRVSATFDTKAEAEDWALRSEAAIMSGVQAKAVAPMSATQSVIDLF 65

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSA 133
             Y      G           + F +  R +     +  +   +    + R  +  PS+ 
Sbjct: 66  RRYAAEVSPGKRGTRWEQIRIAAFCRSERFA--VPIQLFSAIDMAGWRDDRLLEVAPSTI 123

Query: 134 IQFLTSMRVLFKWAVRQEY---VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF--WSE 188
            + L  +  +F  A++ E+   +  NP   ++RP+      R  ++++      +  W  
Sbjct: 124 NRDLNLISAIFNHAIK-EWRLPIPSNPVHDIQRPRNPKARTRRVSQKERDAIADYLGWDC 182

Query: 189 GSQPRL-------AFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPD 239
            S P         AF   L + +R  +         HL  N   +   K G    V L  
Sbjct: 183 ASTPSTQREWVAFAFFLALETAMRKGELLSMTWGDVHLHENYVHLSMTKNGEERDVPLSS 242

Query: 240 GFMKL--LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATI 296
               L  LA      E+         + +      F+      G+ +   H  R+ +AT 
Sbjct: 243 TAKALFLLASPAQSNESVI------PITSGYLDTTFRRATRDLGIKDLHFHDSRREAATQ 296

Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324
            +   +   EL A  G K++D  + Y +
Sbjct: 297 LSKKLSNVLELSAVTGHKSLDLLKIYYR 324


>gi|2618957|gb|AAC48886.1| integrase [Phage 21]
 gi|2618963|gb|AAC48890.1| integrase [Phage 21]
          Length = 356

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 51/302 (16%), Positives = 96/302 (31%), Gaps = 39/302 (12%)

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKSAH----WGSLAVNSRISFESYFDQIIRKSGDF 109
           S  +R      R+   T+   + +Y            L  NS               G  
Sbjct: 45  SVNERLERMKGRRSDITVTEWLDKYISIQEDRLQHNELKPNSYRQKGKPIRLFREHCGMQ 104

Query: 110 DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL----FKWAVRQEYVA--INPCLSVER 163
             + IT   I   +++ K       +    +R++    FK A    +V    NP  + ++
Sbjct: 105 HLKDITALDIAEIIDAVKAEGH--NRMAQVVRMVLIDVFKEAQHAGHVPPGFNPAQATKQ 162

Query: 164 PKRKTEGIRPWTKEDMQQ-FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222
           P+ +    R  +  + Q  F+S        +      L +G R  D C      + +++ 
Sbjct: 163 PRNRVNRQR-LSLPEWQAIFESVSRRQPYLKCGMLLALVTGQRLGDICNLKFSDIWDDML 221

Query: 223 SIKTQKTGTIITVELP---DGFMKLLAMTPIGKETFFIN-------------NDKQKMNA 266
            I  +KTG+ + + L    D     L           ++             N   +++A
Sbjct: 222 HITQEKTGSKLAIPLSLKCDALNITLREVISQCRDAVVSKYLVHYRHTTSQANRGDQVSA 281

Query: 267 TQFSIWFKAKATKAGVNK------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
              +  FK    K G+        + H  R  S  +  + G    +L    G K+    +
Sbjct: 282 NTLTTAFKKAREKCGIKWEPGTAPTFHEQRSLSERLYREQGLDTQKL---LGHKSRKMTD 338

Query: 321 TY 322
            Y
Sbjct: 339 RY 340


>gi|323493805|ref|ZP_08098923.1| integrase [Vibrio brasiliensis LMG 20546]
 gi|323311939|gb|EGA65085.1| integrase [Vibrio brasiliensis LMG 20546]
          Length = 342

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 50/323 (15%), Positives = 99/323 (30%), Gaps = 37/323 (11%)

Query: 13  KERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           +   R+GK    FR+   ++             AY   +  +   +E++  P  K   L 
Sbjct: 15  RPSGRNGK---RFRRKFDKK---------AEALAYEKHILSTHHNKEWLGLPVDKRR-LS 61

Query: 73  WLISEY-RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG---VESRKH 128
            LI  +  KS         +  ++    + I R+ GD     I    I +      +R  
Sbjct: 62  ELIDIWWIKSGQLK----RTAANYRKKVELICRELGDPTVNNIDATLISNWQLERMARGQ 117

Query: 129 TPSSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
             ++  +  + +  +F   +    +   +P   +++P  +   +   T +  Q    +  
Sbjct: 118 KANTVRRLTSCLSNVFSVLIETGDFTGAHPLKDLKQPAPEKSEMTYLTLKQTQDLLDYLK 177

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
              +     E  L +G R  ++      +L          KTG   TV +       +  
Sbjct: 178 NDWELLKIVEISLATGSRWRETVTLKSSNLSPYRIRFTNTKTGKPRTVPISKQLYDDIYP 237

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK----SAHGVRKFSATISADAGAT 303
                      N     +        +    K G +       H +R   A+     G  
Sbjct: 238 E----------NGGNLFSEDPQVRLVRIF-DKLGFDLPKGQKVHVLRHTFASHFVMNGGD 286

Query: 304 AHELMATYGWKTVDQAETYTKGA 326
              L    G  +++Q  TY   A
Sbjct: 287 ILTLKEILGHASINQTMTYAHLA 309


>gi|17981816|ref|NP_536807.1| integrase [Haemophilus phage HP2]
 gi|145639521|ref|ZP_01795125.1| putative integrase [Haemophilus influenzae PittII]
 gi|13752189|gb|AAK37784.1| integrase [Haemophilus phage HP2]
 gi|145271312|gb|EDK11225.1| putative integrase [Haemophilus influenzae PittII]
 gi|309750497|gb|ADO80481.1| integrase [Haemophilus influenzae R2866]
          Length = 337

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/261 (14%), Positives = 74/261 (28%), Gaps = 26/261 (9%)

Query: 83  HWGSLAVNSRIS---FESYFDQIIRKSGDFDYRKITTKHIRSGVESR--------KHTP- 130
            W  L   +        +    +    GD    +   +      + R        K+ P 
Sbjct: 68  EWFDLHGKTLSDGEARLAKLKNLCANLGDPPANEFNAEIFADYRKRRLDGEFSVNKNNPP 127

Query: 131 --SSAIQFLTSMRVLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
             ++  +    +R +F      +++ A NP   V   K +   +    + D+ +  +   
Sbjct: 128 KEATVNREHAYLRAVFNELKSLRKWTAENPLDGVRLFKERETELAFLYERDIYRLLAECD 187

Query: 188 EGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
               P   L     L +G R S++       +     +    K+    TV +      +L
Sbjct: 188 NSRNPDLGLIVRICLATGARWSEAETLTQSQVMPYKITFVNTKSKKNRTVPISKELFDML 247

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAH 305
              P  +   F +          F         +    +  H +R   A+     G    
Sbjct: 248 ---PKKRGRLFNDAY------ESFENAVLRAEIELPKGQLTHVLRHTFASHFMMNGGNIL 298

Query: 306 ELMATYGWKTVDQAETYTKGA 326
            L    G  T++    Y   A
Sbjct: 299 VLKEILGHSTIEMTMRYAHFA 319


>gi|221202027|ref|ZP_03575063.1| phage integrase family protein [Burkholderia multivorans CGD2M]
 gi|221204842|ref|ZP_03577859.1| phage integrase family protein [Burkholderia multivorans CGD2]
 gi|221175699|gb|EEE08129.1| phage integrase family protein [Burkholderia multivorans CGD2]
 gi|221178110|gb|EEE10521.1| phage integrase family protein [Burkholderia multivorans CGD2M]
          Length = 387

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 62/349 (17%), Positives = 109/349 (31%), Gaps = 42/349 (12%)

Query: 15  RTRHGKIIYY---FRKGHGRRIRLPYP--HESTFIPAYMSALTGSTPKREYINSPRKKPT 69
           RTR    I Y    R      +   +P   E+    A   A          I + R++  
Sbjct: 7   RTRQLDTIRYQATIRIKGFPTLSRAFPSRTEAEAWLAEHEASIHRRIHSAKIEAERQRIA 66

Query: 70  --------TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121
                   TL  L+  Y  +      + +      +    +     D     +  + +  
Sbjct: 67  AECSVQYRTLGDLMRRYLATVTPSKRSADQETIRMNGL--LKHGIADCPIVNLDRQRVAE 124

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA------INPCLSVERPKRKTEGIRPWT 175
             ++R    +        +  L    V+   V        NP L+V RP       R   
Sbjct: 125 WRDARLQNVTGPTVRRDMI--LLAHVVKIGMVEWNTPLVENPFLTVRRPLEGPPRNRRMK 182

Query: 176 KEDMQQFKSFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGT 231
             +     S   +   P  R   E  L + LR S+  +    ++        +   K+GT
Sbjct: 183 SGEEPALLSVCDDARAPYLRPIVELALETALRQSELVQLDWSNVSMSGRYAYLPMTKSGT 242

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKM-------NATQFSIWFKAKATKAGV-N 283
              + L    +++LA  P       +++D  +         +      F   + +AG+ N
Sbjct: 243 ARGIPLSSRAVEILADLPAA-----LDSDGNRAGPVFVGATSEAVKRAFIRASRRAGLAN 297

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK--GADRIR 330
              H +R  + +   + G T  E+    G KT    E YT    AD  R
Sbjct: 298 FRFHDLRHEATSRFFERGLTVPEVARITGHKTWTMLERYTHLQLADVAR 346


>gi|71904451|ref|YP_281254.1| DNA integration/recombination/invertion protein [Streptococcus
           pyogenes MGAS6180]
 gi|94991383|ref|YP_599483.1| DNA integration/recombination/inversion protein [Streptococcus
           pyogenes MGAS10270]
 gi|71803546|gb|AAX72899.1| DNA integration/recombination/invertion protein [Streptococcus
           pyogenes MGAS6180]
 gi|94544891|gb|ABF34939.1| DNA integration/recombination/inversion protein [Streptococcus
           pyogenes MGAS10270]
          Length = 387

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 41/287 (14%), Positives = 87/287 (30%), Gaps = 37/287 (12%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           T K L   + ++            +       I+   G+    KIT   I+  +      
Sbjct: 75  TFKELSHLWLETYKLTVKPQTYDATVTRLNRHIMPTLGNMKVDKITASDIQMLINRLSKY 134

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK---TEGIRPWTKEDMQQFKSFW 186
             +     + +R + +  V    +  N    +  P+++    + ++     D++ F    
Sbjct: 135 YVNYTAVRSVIRKVLQQGVLLGLIDYNSARDIILPRKQPNAKKKVKFIDPSDLKSFLEHL 194

Query: 187 SEGSQPR-------LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT---------- 229
                 R       + ++ LL +GLR  ++C      +     +I   KT          
Sbjct: 195 ETSQHKRYNLYFDAVLYQLLLSTGLRIGEACALEWGDIDLENGTIAINKTYNKNLKFLST 254

Query: 230 -----GTIITVELPDGFMKLL-----------AMTPIGKETFFINNDKQKMNATQFSIWF 273
                G  +          L             +     E  F    ++  NA+      
Sbjct: 255 AKTQSGNRVISVDKKTLRSLKLYQMRQRQLFNEVGARVSEVVFATPTRKYFNASVRQSAL 314

Query: 274 KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
             +  +AG+ + + H  R   A++  +AG +  EL    G   +   
Sbjct: 315 DTRCKEAGIERFTFHAFRHTHASLLLNAGISYKELQYRLGHANISMT 361


>gi|156935256|ref|YP_001439172.1| hypothetical protein ESA_03107 [Cronobacter sakazakii ATCC BAA-894]
 gi|156533510|gb|ABU78336.1| hypothetical protein ESA_03107 [Cronobacter sakazakii ATCC BAA-894]
          Length = 387

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 44/219 (20%), Positives = 82/219 (37%), Gaps = 25/219 (11%)

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             T + A   L+ ++ L + A  +E+  ++    V+ P+ K + IR     + ++     
Sbjct: 141 AATATKATH-LSFIKALLR-AAEREWKMLDKAPIVKVPQPKNKRIRWLEPHEAKRLIDEC 198

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGFM 242
            +  +     EF L +GLR S+      Q +           +  K+   I V L D   
Sbjct: 199 PDPLKS--VVEFALATGLRRSNIINLEWQQIDMQRRVAWIHPEQSKSNQAIGVALNDTAC 256

Query: 243 KLLAMTPIGKETFFINNDK--------------QKMNATQFSIWFKAKATKAGV-NKSAH 287
           ++L    IG    ++   K              +KM     + W +A   +AG+ +   H
Sbjct: 257 RVLKRQ-IGNHHKWVFVYKESCTRPDGTKAPTVRKMRYDANTAW-RAALKRAGIEDFRFH 314

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            +R   A+    AG     L    GW++++    Y   A
Sbjct: 315 DLRHTWASWLVQAGVPISVLQEMGGWESIEMVRRYAHLA 353


>gi|325125902|gb|ADY85232.1| Integrase/recombinase, phage integrase family [Lactobacillus
           delbrueckii subsp. bulgaricus 2038]
          Length = 323

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/261 (13%), Positives = 83/261 (31%), Gaps = 12/261 (4%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVESRKHTP 130
           L+++Y  +      +  S   + +   + + K G      +T    K++     +   + 
Sbjct: 48  LLAKYFAAKRAEGCSEKSLAYYRATIVKALSKIGSNAIEIVTDQLRKYLTDYQTAHNSSK 107

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
            +       +   F W   ++Y+  +P   + + +        ++ E++++ +       
Sbjct: 108 VTIDNIRRILSSFFNWLEDEDYIVKSPIRRIHKVRVVKTVKETYSDEELEKLRDGCD-NL 166

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG-----FMKLL 245
           +     +FL  +G+R  +      Q +            G+   V   D        + L
Sbjct: 167 RDLAMIDFLSTTGMRVGELVLLNRQDINFQERECIVFGKGSKERVTYFDARSKLHLQRYL 226

Query: 246 AMTPIGKETFFINN--DKQKMNATQFSIWFKAKATKAGVNKS-AHGVRKFSATISADAGA 302
                  E  F+       ++  +      K    + G++    H  R+  AT + D G 
Sbjct: 227 ESRDDANEALFVGLKWPHNRLTISGVESRLKVVGNRLGISAVYPHKFRRTLATKAIDKGM 286

Query: 303 TAHELMATYGWKTVDQAETYT 323
              +L        +D    Y 
Sbjct: 287 PIEQLQRLLEHSRIDTTLHYA 307


>gi|307316349|ref|ZP_07595793.1| integrase family protein [Sinorhizobium meliloti AK83]
 gi|306898189|gb|EFN28931.1| integrase family protein [Sinorhizobium meliloti AK83]
          Length = 330

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/284 (15%), Positives = 82/284 (28%), Gaps = 30/284 (10%)

Query: 77  EYRKS-AHWGSLAVNSRISFESYFDQIIRKS-GDF-------DYRKITTKHIRSGVESRK 127
            +  S A    L+  +  ++E    Q +    G         D   +    +R  +  R+
Sbjct: 37  RWLASLAEERRLSEKTVDAYERDTRQFLTFLTGHLAGPPRLSDICALRPADLRGFLAQRR 96

Query: 128 HTPSSAIQF---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----- 179
              + A      L  +R   ++  R          +V  PK+     +  T  +      
Sbjct: 97  KGGAGARTLGRGLAGLRSFLRYLERNGLANAAGAGAVRSPKQPKSLPKALTDREALKVVT 156

Query: 180 --QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVE 236
              Q        ++       L   GLR +++           + S++ T K G    V 
Sbjct: 157 ADAQLAEEPWIAARNAAVLTLLYGCGLRIAEALDLIPADFSGPVTSLRVTGKGGKTRIVP 216

Query: 237 LPDGFMKLLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAH 287
           +     + +             +E  F      K+         +      G+    + H
Sbjct: 217 MIAAAAEAVETYRKLCPYHIEPEEPIFRGARGAKLQPAIIQREMQKLRAALGLPDSATPH 276

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            +R   AT     G     +    G  ++   + YT G D  RL
Sbjct: 277 ALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYT-GVDSARL 319


>gi|229111172|ref|ZP_04240729.1| Phage integrase [Bacillus cereus Rock1-15]
 gi|228672336|gb|EEL27623.1| Phage integrase [Bacillus cereus Rock1-15]
          Length = 381

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 57/366 (15%), Positives = 124/366 (33%), Gaps = 59/366 (16%)

Query: 17  RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK--------- 67
           R    ++ FR      +R   P+   +              +       KK         
Sbjct: 5   RKFGDVWEFR------VRFKDPYTQKYKEKSKRGFKTKKEAQLAAAEEEKKLLNGLEVEI 58

Query: 68  -PTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVES 125
            PT+LK  + ++ K     ++  N+ I  E   +  II    + + +++     +  + S
Sbjct: 59  TPTSLKHYLRDWLKLFKQDNVRKNTFILHERNIEKHIIPYFQNMNLKELKPMMYQKFINS 118

Query: 126 ---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV---ERPKRKTEGIRPWTKEDM 179
              + ++  +      +M    K AV  + +  NPC  V    +  ++ EG++    ED+
Sbjct: 119 LIDQGYSKRTVQIIHGTMNNAMKKAVSLKKIENNPCEEVVISNKNNKEREGLKYMRSEDI 178

Query: 180 QQFKSFWSEGSQPRLAF-EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT--------- 229
             F     + +     F + LL +G+R  ++     + +     +I   KT         
Sbjct: 179 PLFLKTSYQYNYIYYIFFKTLLNTGMRKGEAAALQWKDINLKEHTITISKTLDFTAKTKE 238

Query: 230 ---------GTIITVELPDGFMKLLAMTPI---------------GKETFFINNDKQKMN 265
                     +  T+ +P   +  L                      +  F   D + + 
Sbjct: 239 ELFGDTKTFTSKRTIMIPKSLVDELLAHKKWQNANKLVLQDAYEYELDLVFSRVDGKFLP 298

Query: 266 ATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYT 323
            +     F     KA + +   H +R   A +  ++GA+   +    G K+++  +  Y+
Sbjct: 299 KSTLFNAFSRILKKANLPRLEIHSLRHTHAVLLLESGASMKYIQDRLGHKSIEITSNVYS 358

Query: 324 KGADRI 329
             +D+I
Sbjct: 359 HISDKI 364


>gi|160887647|ref|ZP_02068650.1| hypothetical protein BACUNI_00047 [Bacteroides uniformis ATCC 8492]
 gi|270294572|ref|ZP_06200774.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|156862858|gb|EDO56289.1| hypothetical protein BACUNI_00047 [Bacteroides uniformis ATCC 8492]
 gi|270276039|gb|EFA21899.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 396

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 47/272 (17%), Positives = 99/272 (36%), Gaps = 30/272 (11%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVESRKHTPSSAI 134
           +R+     +L  +++ +  S    + +   D  +  +T          ++SR +  ++  
Sbjct: 111 FRQEIANSTLKESTKRNHLSTLSLLQQFKKDVTFSDLTFEFISSFEYFLQSRGYHTNTIA 170

Query: 135 QFLTSMRVLFKWAVRQEYVAINP-CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
           + +  ++     A+ ++Y+ I        + K         + E++++ +     G   +
Sbjct: 171 KHMKHLKRHINVAINKDYMEIQKYAFRKYKIKTIENKHTHLSPEELEKLEKLSLAGRYTK 230

Query: 194 L-----AFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDGFMKL 244
           L     AF F  Y+G+R SD       ++    Q      K+ KT T + + L       
Sbjct: 231 LQKTLDAFLFCCYAGMRYSDFISLSPDNIVEIRQETWLIYKSIKTSTEVRLPL------- 283

Query: 245 LAMTPIGKETFFINNDK----QKMNATQFSIWFKA---KATKAGVNK--SAHGVRKFSAT 295
             +   GK    ++  +       +    S   K     +  AG++K  S H  R  +AT
Sbjct: 284 -YLLFEGKGLVILDKYRDDLQSFFHLRDNSNVNKDLIVISRLAGLSKKISFHTARHTNAT 342

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           +    G     +    G K+V   + YT   D
Sbjct: 343 LLIYNGVNITTVQKLLGHKSVKTTQVYTNVMD 374


>gi|46200178|ref|YP_005845.1| DNA integration/recombination/invertion protein [Thermus
           thermophilus HB27]
 gi|46197806|gb|AAS82218.1| DNA integration/recombination/invertion protein [Thermus
           thermophilus HB27]
          Length = 392

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 40/248 (16%), Positives = 86/248 (34%), Gaps = 32/248 (12%)

Query: 104 RKSGDFDYRKITTKHIRSGVESRKHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
              G    +++   H+R+ V+        P +  + L  ++ LF+ A+R E VA NP  +
Sbjct: 114 DPLGRMRLQEVKPVHVRAAVDRVAEAGYAPRTVNRVLMRLKALFREALRLELVARNPAEA 173

Query: 161 VE-RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE--FLLYSGLRCSDSCRAGVQHL 217
           V  R  +  +  R    +++ +            +A     +L +GLR  ++     + +
Sbjct: 174 VRLRLPKGEKTARALEPQEVARLLEAAEASRSKDMALLLRLMLETGLRRGEALALQWRDI 233

Query: 218 QNNIFSIKT-------QKTGTIITVELPDGFMK------------------LLAMTPIGK 252
                 +         +  G     + P    K                  L  +TP   
Sbjct: 234 DLEAGELTVWRSWTKARGKGAFSEPKTPTAKRKVPLPRGLLLRLKARREELLERLTPEEV 293

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATY 311
           +  F+    + ++   F+ + +  A +AG+ +   H +R   AT++   G     +    
Sbjct: 294 DGLFLVGGVKPVDPDAFNHYLRRLAERAGLGRVRVHDLRHTWATLALSRGVPLEVVSERL 353

Query: 312 GWKTVDQA 319
           G  +    
Sbjct: 354 GHASPTIT 361


>gi|15675872|ref|NP_270046.1| putative integrase [Streptococcus pyogenes M1 GAS]
 gi|13623107|gb|AAK34767.1| putative integrase - phage associated [Streptococcus pyogenes M1
           GAS]
          Length = 381

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 41/287 (14%), Positives = 87/287 (30%), Gaps = 37/287 (12%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           T K L   + ++            +       I+   G+    KIT   I+  +      
Sbjct: 69  TFKELSHLWLETYKLTVKPQTYDATVTRLNRHIMPTLGNMKVDKITASDIQMLINRLSKY 128

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK---TEGIRPWTKEDMQQFKSFW 186
             +     + +R + +  V    +  N    +  P+++    + ++     D++ F    
Sbjct: 129 YVNYTAVRSVIRKVLQQGVLLGLIDYNSARDIILPRKQPNAKKKVKFIDPSDLKSFLEHL 188

Query: 187 SEGSQPR-------LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT---------- 229
                 R       + ++ LL +GLR  ++C      +     +I   KT          
Sbjct: 189 ETSQHKRYNLYFDAVLYQLLLSTGLRIGEACALEWGDIDLENGTIAINKTYNKNLKFLST 248

Query: 230 -----GTIITVELPDGFMKLL-----------AMTPIGKETFFINNDKQKMNATQFSIWF 273
                G  +          L             +     E  F    ++  NA+      
Sbjct: 249 AKTQSGNRVISVDKKTLRSLKLYQMRQRQLFNEVGARVSEVVFATPTRKYFNASVRQSAL 308

Query: 274 KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
             +  +AG+ + + H  R   A++  +AG +  EL    G   +   
Sbjct: 309 DTRCKEAGIERFTFHAFRHTHASLLLNAGISYKELQYRLGHANISMT 355


>gi|329934920|ref|ZP_08284961.1| phage integrase [Streptomyces griseoaurantiacus M045]
 gi|329305742|gb|EGG49598.1| phage integrase [Streptomyces griseoaurantiacus M045]
          Length = 409

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 64/314 (20%), Positives = 98/314 (31%), Gaps = 60/314 (19%)

Query: 64  PRKKPTTLKWLISEYR--KSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIR 120
           P++  TT +     +   +S+ +      +R S  S      I   G         +HIR
Sbjct: 77  PQRARTTFRQYAERWLSAQSSDFT-----TRESVRSQITGHAIPYLGSRPLGSFRPEHIR 131

Query: 121 SGVESR-KHTPSSAIQFL--TSMRVLFKWAVRQEYVAINPC--LSVERPKRKTEGIRPWT 175
             +    +  P+S+ + +   S+  L   AV   Y+  NPC   SV+ P R    + PWT
Sbjct: 132 EWLAELERAVPASSYRRVIFASVSALLNAAVDDGYLHKNPCAVSSVKAPARNPGRLVPWT 191

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRA---------GVQHLQ------NN 220
              +  F+   +   Q R   +     GLR  +             G  H+       + 
Sbjct: 192 AGQV--FRVRAALPEQYRAVVDLGAGCGLRQGEIFGLAVPEIRFKTGWLHVGCQVKIVDG 249

Query: 221 IFSIKTQKTGTIITVELP----DGFMKLLAMTP---------------IGKETFFINNDK 261
                  K      V L     D     +   P               + K   F+  D 
Sbjct: 250 HLVFALPKRQKERDVPLSGHVADILRAHMKAHPPVSVSLPWGRPDGPLVTKRLLFVRPDG 309

Query: 262 QKMNATQ-FSIWF-KAKATKAGV--------NKSAHGVRKFSATISADAGATAHELMATY 311
                   F+  F K    +AGV            H +R F A++  DAG     L A  
Sbjct: 310 TGAVRRTDFNTRFWKEAIVQAGVIPTPAAAREHGMHALRHFYASVLLDAGENIKALSAYL 369

Query: 312 GWKTVD-QAETYTK 324
           G         TYT 
Sbjct: 370 GHSDPGFTLRTYTH 383


>gi|288800250|ref|ZP_06405708.1| integrase [Prevotella sp. oral taxon 299 str. F0039]
 gi|288332463|gb|EFC70943.1| integrase [Prevotella sp. oral taxon 299 str. F0039]
          Length = 409

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 39/258 (15%), Positives = 81/258 (31%), Gaps = 22/258 (8%)

Query: 89  VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG----VESRKHTPSSAIQFLTSMRVLF 144
            ++R   + +  +      D  + ++T   I       +    H  S+  +    ++ + 
Sbjct: 138 HSTRKRLQEFIQR-RYHVSDLAFSQLTESFIYELQAFCLGDLGHQQSTFFRVAADLKTVC 196

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-----FKSFWSEGSQPRLAFEFL 199
           + A R+          V   +   +  +   +E + +     F     E    R  F F 
Sbjct: 197 RLAYREGLADTLLFDKVHIERGDKKAPKTLDQEALDKLKALRFDELEEEMETARDVFLFA 256

Query: 200 LYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254
            Y+G    D      +HL  +           QKTG +  ++L    ++L+      +  
Sbjct: 257 CYTGAAYCDLIELSKKHLIRDDEDCLWLKFNRQKTGVLCRIKLLPEAVQLIQKMHSDERE 316

Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS-ADAGATAHELMATY 311
             I         + +    KA   ++ +    + H  R   AT+   + G     +    
Sbjct: 317 TLI----PYFKYSTYQSCLKALRLRSDISFPFTTHTARHTFATLITLEQGVPIETVSKML 372

Query: 312 GWKTVDQAETYTKGADRI 329
           G   V   E Y K   + 
Sbjct: 373 GHTNVSMTERYAKVIPQK 390


>gi|13488301|ref|NP_085852.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
 gi|14028101|dbj|BAB54693.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
          Length = 336

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 49/300 (16%), Positives = 98/300 (32%), Gaps = 41/300 (13%)

Query: 65  RKKPTTLKWLISEYRKSA--HWGSLAVNSRISFESYFDQIIR----KSGDFD----YRKI 114
           RK   +   L+  Y      +  +++  +  ++   F  ++R      G          +
Sbjct: 4   RKTHPSFAVLLQRYFTEHLTNQRAVSPRTIAAYRDTFRLLLRFAERHIGKAPANVELLDL 63

Query: 115 TTKHIRSGVE----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINP----CLSVERPKR 166
            ++ I + ++     R + P S    L+++R    +A   +  A+ P     L++ + + 
Sbjct: 64  DSELILAFLDHLERERDNGPRSRNVRLSAIRSFLHYASHHDVTAL-PTIQRALAIPQKRY 122

Query: 167 KTEGIRPWTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI- 221
               +   ++E+MQ      ++    G + +  F  +  +G R S+     V  +  +  
Sbjct: 123 DKPLLEFLSREEMQAILDAPNQLEWTGRRDQAFFTTMYNTGGRVSELIGLRVSDVVLDGS 182

Query: 222 --FSIKTQKTGTIITVELPDGFMKLLAMTPI------GKETFFINNDKQKMNATQFSIWF 273
               I   K     TV L      LL           G   FF N D   M  +  +   
Sbjct: 183 ACIHIN-GKGRKQRTVPLWRSSANLLRAWRREAGDVAGSAAFFPNRDGVAMTRSNVTQRL 241

Query: 274 KAKATKAGVNK--------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
                KA   K        S H  R  +A     +G     +    G ++      Y + 
Sbjct: 242 ALYVKKAAEKKPQLLAKTISPHTFRHSTAMHLLQSGVDISVIALWLGHESPTTTHNYLQA 301


>gi|312875769|ref|ZP_07735763.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LEAF 2053A-b]
 gi|311088704|gb|EFQ47154.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LEAF 2053A-b]
          Length = 329

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/248 (13%), Positives = 77/248 (31%), Gaps = 14/248 (5%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHTPSSAIQFLTSMRVL 143
           +  S   + +  + +  K    + R++ T  IR+ +    + +  +  +       +   
Sbjct: 68  SEKSLTYYRATIEVMTTKI-KKNVREMETDDIRTYLTEYQQEKNSSKVTVDNIRRILSSF 126

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203
           F W   + Y+  +P   + + K        +T E +++ +    E  +     + L  +G
Sbjct: 127 FSWLEDENYILKSPARRIHKVKAALTIKETYTDEALEKMRDSCEEP-RDLALIDILTSTG 185

Query: 204 LRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG-----FMKLLAMTPIGKETFFIN 258
           +R  +        +            G+   +   D       +  L          F++
Sbjct: 186 MRVGELVLLNRDDINFEERECVVFGKGSKERMVYFDARTKIHLLTYLQGRTDDNPALFVS 245

Query: 259 NDKQKMNAT--QFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKT 315
                            +    K  + K   H  R+  AT++ D G    +L    G K 
Sbjct: 246 LRAPHDRLKIGGVECRLRELGNKLDIEKVHPHKFRRTLATMAIDKGMPIEQLQQLLGHKR 305

Query: 316 VDQAETYT 323
           +D    Y 
Sbjct: 306 IDTTLQYA 313


>gi|94995293|ref|YP_603391.1| DNA integration/recombination/inversion protein [Streptococcus
           pyogenes MGAS10750]
 gi|94548801|gb|ABF38847.1| DNA integration/recombination/inversion protein [Streptococcus
           pyogenes MGAS10750]
          Length = 387

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 41/287 (14%), Positives = 87/287 (30%), Gaps = 37/287 (12%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           T K L   + ++            +       I+   G+    KIT   I+  +      
Sbjct: 75  TFKELSHLWLETYKLTVKPQTYDATVTRLNRHIMPTLGNMKVDKITASDIQMLINRLSKY 134

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK---TEGIRPWTKEDMQQFKSFW 186
             +     + +R + +  V    +  N    +  P+++    + ++     D++ F    
Sbjct: 135 YVNYTAVRSVIRKVLQQGVLLGLIDYNSARDIILPRKQPNAKKKVKFIDPSDLKSFLEHL 194

Query: 187 SEGSQPR-------LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT---------- 229
                 R       + ++ LL +GLR  ++C      +     +I   KT          
Sbjct: 195 ETSQHKRYNLYFDAVLYQLLLSTGLRIGEACALEWGDIDLENGTIAINKTYNKNLKFLST 254

Query: 230 -----GTIITVELPDGFMKLL-----------AMTPIGKETFFINNDKQKMNATQFSIWF 273
                G  +          L             +     E  F    ++  NA+      
Sbjct: 255 AKTQSGNRVISVDKKTLRSLKLYQMRQRQLFNEVGARVSEVVFATPTRKYFNASVRQSAL 314

Query: 274 KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
             +  +AG+ + + H  R   A++  +AG +  EL    G   +   
Sbjct: 315 DTRCKEAGIERFTFHAFRHTHASLLLNAGISYKELQYRLGHANISMT 361


>gi|34762220|ref|ZP_00143227.1| DNA integration/recombination/invertion protein [Fusobacterium
           nucleatum subsp. vincentii ATCC 49256]
 gi|27888181|gb|EAA25240.1| DNA integration/recombination/invertion protein [Fusobacterium
           nucleatum subsp. vincentii ATCC 49256]
          Length = 405

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 47/315 (14%), Positives = 102/315 (32%), Gaps = 52/315 (16%)

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFES-----YFDQIIRKSGDFDYRKITTKHIRS 121
           K  +    I  Y K   + ++   +  S+ S           ++  +   + I T  I+ 
Sbjct: 83  KEISFCNFILGYVK-MRFKTIDDATYSSYLSNTKISILPYFFKE--NKKLKDINTFDIQK 139

Query: 122 G----VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
                +  R  + ++ I +   + + FK+A +   + INP L+VE+PK+     + +  E
Sbjct: 140 YYFHELNVRGVSANTVIHYHNLLSLTFKYAQKIGIITINPMLNVEKPKKVRYIAKVYNHE 199

Query: 178 DMQQFKSFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQ------------------HLQ 218
            +++      +  +   L      + GLR S+                         +L 
Sbjct: 200 QIKEMLEILKKEDKVLYLGVVITSFFGLRRSELLGLKWSAINFVDNTMSIVHTVTETNLD 259

Query: 219 NNIFSIKTQKTGTIITV-------ELPDGFMKLLAMTPIGKE------------TFFINN 259
                IK  KT +   +        + +  ++L       KE              ++N 
Sbjct: 260 GKNILIKKDKTKSTAGLRSFVLPGSIKEMLLELKEEQKRNKERLGKGYYTKDEEYVYVNE 319

Query: 260 DKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
             +       +  F+    K  +     H +R   ATI  ++     ++    G  +   
Sbjct: 320 GGELHKPKFLTNGFRKFLAKHNLTHIRFHDLRHSCATILCESNVNVKDIQMFLGHSSAKT 379

Query: 319 A-ETYTKGADRIRLG 332
             + Y    ++  L 
Sbjct: 380 TMDIYVHQMNKSNLS 394


>gi|317505107|ref|ZP_07963052.1| integrase [Prevotella salivae DSM 15606]
 gi|315663771|gb|EFV03493.1| integrase [Prevotella salivae DSM 15606]
          Length = 391

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/219 (17%), Positives = 77/219 (35%), Gaps = 27/219 (12%)

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQQFKSF 185
             + ++AI+ L + + +  +  +      +P L++  + KR   G    T E++      
Sbjct: 157 GQSFNTAIKTLKTFKTVIIFGRKAGVFNHDPFLNIHFKTKRVDRGF--LTDEEIDTI--M 212

Query: 186 WSEGSQPRL-----AFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVE 236
             E +  RL      F F  ++GL   D       ++             +KT T+  + 
Sbjct: 213 HKEFATQRLVNVRDIFLFSCFTGLAYVDVANLTADNIITMDGKQWIVTARKKTDTLSHIL 272

Query: 237 LPDG----FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290
           L D       K       G+    ++N        + + + K  A   G+NK  + H  R
Sbjct: 273 LLDIPKMIIKKYAGCAKNGRLIPILSN-------QRMNSYLKEIADVCGINKNLTFHMAR 325

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              AT+    G     +    G  ++   + Y +  ++ 
Sbjct: 326 HTFATMMLTKGVPVESVSKMLGHSSITTTQLYARITNKK 364


>gi|312200217|ref|YP_004020278.1| integrase family protein [Frankia sp. EuI1c]
 gi|311231553|gb|ADP84408.1| integrase family protein [Frankia sp. EuI1c]
          Length = 310

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 44/270 (16%), Positives = 89/270 (32%), Gaps = 19/270 (7%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVESRK 127
              L++ +  S      +  +R ++     +        G            R   +   
Sbjct: 27  WPALVALWLDSG----FSPRTREAYGRAVAEWTRACEAWGIHPLDARRPHADRWARDLEA 82

Query: 128 HTPSSAI--QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT--KEDMQQFK 183
              +S    + L S+  ++ +A+ +  +  +P   V+RPK       P     +      
Sbjct: 83  AGQASTTIGRKLASVASVYAYALDEHLIDASPLAKVKRPKTTDRHQAPGMTLDQARAFLA 142

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL---QNNIFSIKTQKTGTIITVELPDG 240
           +  ++G +       LL +GLR S++  A V  L   + +       K     TV L   
Sbjct: 143 AADADGPRTSALMRLLLANGLRVSEAIEADVDQLGHERGHRVLRIVGKGSKAATVVLAPP 202

Query: 241 FMKLLAMTPIGK--ETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSAT 295
             + +     G+     F+     +++        +  A +AG+     S H +R  S T
Sbjct: 203 TARAIDAYLAGRTAGPLFVTATGNRLDRPAVWRTIRRLAKRAGLGDLQLSPHSLRATSVT 262

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKG 325
           +  DAGA+  +               Y + 
Sbjct: 263 LLLDAGASLRDAQDHARHADPRTTRAYDRA 292


>gi|258425113|ref|ZP_05687983.1| phage integrase [Staphylococcus aureus A9635]
 gi|257844696|gb|EEV68740.1| phage integrase [Staphylococcus aureus A9635]
          Length = 344

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 52/333 (15%), Positives = 114/333 (34%), Gaps = 28/333 (8%)

Query: 13  KERTR--HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT- 69
           + +TR   GK   Y  K  G+R R               A +    K   + S       
Sbjct: 8   RMKTRCYDGKKWQYEFKHEGKRYRKKGFRTK------REANSAGLDKLNELRSGFNIDNY 61

Query: 70  -TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRSGVE--S 125
            TL+     + K+     +  N+   + +    I + K G  +  KI  +  +  +   S
Sbjct: 62  ITLEEYFENWIKTYKQPVVKENTYRHYRNALQHIQKHKIGKMELSKINRQVYQKFINDYS 121

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV-----ERPKRKTEGIRPWTKEDMQ 180
           ++H   +  +   ++R     A+    +  NP   V     +  K + E     T+ ++ 
Sbjct: 122 KEHAKETIRKTNGAIRSALDDALYDGLIFKNPAYKVNYKAGKPTKSEQEKFISVTEYEIL 181

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTG-TIITVEL 237
           +      + ++  LA   ++ +G R S +    ++H+    N   I  +KT  +   + +
Sbjct: 182 K-DHVRKKRTRSSLALFIMICTGCRVSGARNIKIEHINQVKNTIFIDERKTNTSPRYISI 240

Query: 238 PDG----FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKF 292
                   M +++   I  + +        +N    +   K+      +   ++H +R  
Sbjct: 241 AKSDMKHIMDVISTFAISYDGYIFKEGGSIINLHAINNALKSACRVNNIPIITSHALRHT 300

Query: 293 SATISADAGATAHELMATYGWKTVD-QAETYTK 324
             +     G + H +    G K +      Y+ 
Sbjct: 301 HCSYLLAKGVSIHYISKRLGHKNIAITTSVYSH 333


>gi|311234897|gb|ADP87751.1| integrase family protein [Desulfovibrio vulgaris RCH1]
          Length = 457

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 55/326 (16%), Positives = 94/326 (28%), Gaps = 58/326 (17%)

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHI------ 119
           K  T   L   Y   A W      S    +   +  ++ +        IT +H+      
Sbjct: 130 KDITFGELAERY---AAWAKSTRISGHKMQRLLELHVLPRLHSMPAASITPQHLNELRSE 186

Query: 120 ---------RSGVESRKHTPSSAIQFLTSMRVLFKWAV---------RQEYVAINPC--- 158
                    R   E R  +  + +  L ++R ++ +A          R  Y   NP    
Sbjct: 187 LEQTTPLRGRGKAEGRGLSAQTVLHCLKAVREVYNYARETPHPDFPERMLYSGKNPAVLS 246

Query: 159 ---LSVERPKRKTEGIRPWTKEDMQQFKSFWSEG----SQPRLAFEFLLYSGLRCSDSCR 211
                V  P+     +R     ++    S+  +     S+        L +G+R  +  R
Sbjct: 247 RRGHGVRLPRSDARRLRILNDAEISALLSYRGQNVVETSELHDMILISLDTGMRAGELVR 306

Query: 212 AGVQHLQNNIFSIKT--------QKTGTIITVELPDGFMK---LLAMTPIGKETFFINND 260
              + +  +  +I+          K G    V     F +   +L          F    
Sbjct: 307 LRTEDIDVDHGTIRIYSGSDAGITKGGRTRIVHAGHLFAESITMLRRRVGSPGLLFPGRG 366

Query: 261 KQKMNATQFSIWFKAKATKAGVNKS---------AHGVRKFSATISADAGATAHELMATY 311
               N T  S          G+N            H +R   AT   +AG   + L    
Sbjct: 367 GAVRNTTAVSRAMAHICATLGLNADVTDDRNRIVWHTLRHTYATRMLEAGIDIYTLKELL 426

Query: 312 GWKTVDQAETYTKGADRIRLGIKNSR 337
           G  +V   E Y    DR +     +R
Sbjct: 427 GHSSVAVTERYLHLCDRAKRNAALAR 452


>gi|237716536|ref|ZP_04547017.1| integrase [Bacteroides sp. D1]
 gi|262405315|ref|ZP_06081865.1| integrase [Bacteroides sp. 2_1_22]
 gi|294644634|ref|ZP_06722387.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294810165|ref|ZP_06768833.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
 gi|229442519|gb|EEO48310.1| integrase [Bacteroides sp. D1]
 gi|262356190|gb|EEZ05280.1| integrase [Bacteroides sp. 2_1_22]
 gi|292640071|gb|EFF58336.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294442629|gb|EFG11428.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
          Length = 409

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/237 (15%), Positives = 82/237 (34%), Gaps = 20/237 (8%)

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
            +E++ +   +    L  ++ + + A ++ Y           PK+  +  R  ++E  ++
Sbjct: 174 AMENKGYAIDTVRHHLAILKKICRLAYKEGYADKIHFQHFTLPKQSDKTPRALSRESFEK 233

Query: 182 FKSFWSEGSQ-----PRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGT 231
            +    E  +      R  F F  Y+G+  +D      ++L  +         + +K   
Sbjct: 234 IRDVEIEPHRKSHILARDMFLFGCYTGVSYADVISITDENLYTDDNGALWLKYRRKKNEH 293

Query: 232 IITVELPDGFMKLLAMTPI-GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HG 288
             +V+L    + L+       ++T F       +         KA A  AG+      H 
Sbjct: 294 RASVKLLPEAIALIEKYHSEDRDTLFPLLRWPNLRRH-----MKALAALAGIKDDLCYHQ 348

Query: 289 VRKFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
            R   A++   +AG     +    G   +   + Y +     +L     + I +  D
Sbjct: 349 ARHSFASLITLEAGVPIETISRMLGHSDISTTQVYAR-VSPKKLFEDMDKFIEATQD 404


>gi|208972754|gb|ACI32876.1| IntI2 [Escherichia coli]
          Length = 325

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 40/297 (13%), Positives = 82/297 (27%), Gaps = 55/297 (18%)

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLT 138
           R        A+ +  ++  +  + I        + + ++ +R  + S  ++   AI    
Sbjct: 11  RTDMRQKGYALKTEKTYLHWIKRFILFHKKRHPQTMGSEEVRLFLSSLANSRHVAINTQK 70

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPK--RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196
                  +   +      P   ++     +        +  ++Q+        ++ ++ F
Sbjct: 71  IALNALAFLYNRFLQQ--PLGDIDYIPASKPRRLPSVISANEVQRILQVMD--TRNQVIF 126

Query: 197 EFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254
             L  +GLR ++  R  V+     N   ++   K G      LP   + ++         
Sbjct: 127 ALLYGAGLRINECLRLRVKDFDFDNGCITVHDGKGGKSRNSLLPTRLIPVIKQLIEQARL 186

Query: 255 F--------------FINNDKQKMNATQFSIWF--------------------------- 273
                          F  + K      Q +  F                           
Sbjct: 187 IQQDDNLQGVGPSLPFALDRKYPSAYRQAAWMFVFPSSTLCNHPYNGKLCRHHLHDSVAR 246

Query: 274 ---KAKATKAGV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              KA   KAG+     + H  R   AT    AG     +    G   V   + YT 
Sbjct: 247 KALKAAVQKAGIVSKRVTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTH 303


>gi|149191778|ref|ZP_01870016.1| site-specific recombinase IntI4 [Vibrio shilonii AK1]
 gi|148834358|gb|EDL51357.1| site-specific recombinase IntI4 [Vibrio shilonii AK1]
          Length = 321

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 41/312 (13%), Positives = 97/312 (31%), Gaps = 62/312 (19%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----SR 126
               I ++ ++ H+   +  +  ++ S+  Q I        ++++T  +   +     SR
Sbjct: 5   FLNYIRDFMRARHY---SERTIDAYLSWIFQYIVYHDKKHPKEMSTAEVEDFLSYLITSR 61

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
                +  Q L ++  L+K  +  + + +N  +  ++  +  +     T +++ +     
Sbjct: 62  NLAMRTQNQALNALVFLYKH-ILHDPIDVN--MRFKKSNKSKKLPTVLTVKEVSKVLESM 118

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKL 244
                  L  +    SGLR  +  R   Q +  +  +++    K      V L       
Sbjct: 119 LPNF--LLPAQLKYGSGLRLMECLRLRYQDIDFDYGALRIWRAKGNKNRVVTLARELFPA 176

Query: 245 LAMT-------------------------------------------PIGKETFFINN-- 259
           +                                              P  + +    +  
Sbjct: 177 IRRQQQHVESIWRQDVKQSDYSGVWLPNALATKYPNSNKELNWQFLFPSARLSIDPTSNL 236

Query: 260 -DKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTV 316
             +  +N +      K+   K G+ K  S H +R   AT   ++GA    +    G   +
Sbjct: 237 IRRHHINESSVQKALKSAVKKTGIEKRVSCHTLRHSFATHLLESGADIRTVQEQLGHTDL 296

Query: 317 DQAETYTKGADR 328
              + YT   +R
Sbjct: 297 KTTQVYTHVINR 308


>gi|325570747|ref|ZP_08146473.1| tyrosine recombinase XerC [Enterococcus casseliflavus ATCC 12755]
 gi|325156593|gb|EGC68773.1| tyrosine recombinase XerC [Enterococcus casseliflavus ATCC 12755]
          Length = 290

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/270 (13%), Positives = 83/270 (30%), Gaps = 40/270 (14%)

Query: 101 QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
            I  K GD    K T  + ++ +   K   ++     + +  +F +A++   +  NP   
Sbjct: 8   NISEKFGDKRISKYTVPYCQNTINEWKENYATHRALKSYVSKVFDFAIKMNVLTDNPMTY 67

Query: 161 V----ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA--FEFLLYSGLRCSDSCRAGV 214
           V     +   +T+       +++++F  +    S P     F  L ++G+R  ++     
Sbjct: 68  VSFSTGKNSHETKKEIYLEADELKEFLYYCENDSFPLTYPFFRLLAFTGIRKGEALALTW 127

Query: 215 QHLQ--NNIFSIKT-----QKTGTIITVELPDG-------------------------FM 242
             +   +   +I       +K   + T                                +
Sbjct: 128 NDVDFKDRQLTINKTAALDEKNKVVATPPKTSSSNRTISLDQRTVDILKQWRKDQRKYLL 187

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG 301
                     +  F + +   +  T+F+             +   HG R    ++  +AG
Sbjct: 188 AYGQNAMQPNQLVFASKNNNYIALTRFNNVLTRICDNHDFPRLKIHGFRHTHCSLLFEAG 247

Query: 302 ATAHELMATYGWKTVDQA-ETYTKGADRIR 330
            +  E+    G   V      YT    + +
Sbjct: 248 LSVKEVQDRLGHSDVQTTLNIYTHVTKKQK 277


>gi|124010377|ref|ZP_01695023.1| tyrosine recombinase XerD [Microscilla marina ATCC 23134]
 gi|123983544|gb|EAY24009.1| tyrosine recombinase XerD [Microscilla marina ATCC 23134]
          Length = 295

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/278 (13%), Positives = 79/278 (28%), Gaps = 31/278 (11%)

Query: 76  SEYRKSAHWGSLA-VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
             + +S  + S            +    + + G F   ++    + +  +      S   
Sbjct: 19  EAWLRSLGYASSTCDKYPRQLREFL-YFLEQQGRFGLAEVGASDVSAYFDYLSGRRSVKT 77

Query: 135 QFL----------TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
             L           ++R   ++      V +     V  P      IR  ++ ++     
Sbjct: 78  GELLSHSHLRSVRKTLRGFQRYLRSLG-VPVFSLPGVSLPGLSAAPIRVLSRVEVGLLYD 136

Query: 185 FWSE---GSQPRLAFEFLLYSGLRCSD--SCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239
                  G + +         GLR S+      G  H +     + + K      V +  
Sbjct: 137 GCGFDHWGLRDQALLSLGYGCGLRRSEIHLLDVGDVHFKKGWVQVLSGKGRKERFVPMVG 196

Query: 240 GFMKLLAMTPIGK----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---A 286
                L                   F ++    ++     S   +  ATKA ++      
Sbjct: 197 RVKDDLYAYLTEGRRFFSGRSPSPAFLLSQRGHRLGPKSLSERLEKLATKAELSGGSVGL 256

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           H +R   AT   + G +  ++    G  ++D  + YT 
Sbjct: 257 HSLRHSIATHLHNGGMSLSKVSLFLGHSSLDSTQLYTH 294


>gi|50915150|ref|YP_061122.1| DNA integration/recombination/invertion protein [Streptococcus
           pyogenes MGAS10394]
 gi|50904224|gb|AAT87939.1| DNA integration/recombination/invertion protein [Streptococcus
           pyogenes MGAS10394]
          Length = 387

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 41/287 (14%), Positives = 87/287 (30%), Gaps = 37/287 (12%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           T K L   + ++            +       I+   G+    KIT   I+  +      
Sbjct: 75  TFKELSHLWLETYKLTVKPQTYDATVTRLNRHIMPTLGNMKVDKITASDIQMLINRLSKY 134

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK---TEGIRPWTKEDMQQFKSFW 186
             +     + +R + +  V    +  N    +  P+++    + ++     D++ F    
Sbjct: 135 YVNYTAVRSVIRKVLQQGVLLGLIDYNSARDIILPRKQPNAKKKVKFIDPSDLKSFLEHL 194

Query: 187 SEGSQPR-------LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT---------- 229
                 R       + ++ LL +GLR  ++C      +     +I   KT          
Sbjct: 195 ETSQHKRYNLYFDAVLYQLLLSTGLRIGEACALEWGDIDLENGTIAINKTYNKNLKFLST 254

Query: 230 -----GTIITVELPDGFMKLL-----------AMTPIGKETFFINNDKQKMNATQFSIWF 273
                G  +          L             +     E  F    ++  NA+      
Sbjct: 255 AKTQSGNRVISVDKKTLRSLKLYQMRQRQLFNEVGARVSEVVFATPTRKYFNASVRQSAL 314

Query: 274 KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
             +  +AG+ + + H  R   A++  +AG +  EL    G   +   
Sbjct: 315 DTRCKEAGIERFTFHAFRHTHASLLLNAGISYKELQYRLGHANISMT 361


>gi|320450087|ref|YP_004202183.1| transposase [Thermus scotoductus SA-01]
 gi|320150256|gb|ADW21634.1| transposase [Thermus scotoductus SA-01]
          Length = 380

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 45/289 (15%), Positives = 94/289 (32%), Gaps = 38/289 (13%)

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
           PR+ P TL+     +       SLA  +  ++       ++  G    + I    IR  +
Sbjct: 59  PRRDPRTLQAFAEAWLARKE-KSLAAKTLANYRREVGYFLKYLGQKRLQDIRPLDIRQAL 117

Query: 124 ESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDM 179
           +          +  + L  +R LFK A+  E VA +P  +V  + +R+ +  R     + 
Sbjct: 118 DRMAAEGLGVRAQKKALLHLRALFKEALGLELVARDPTAAVRLKAERRPKAGRSLEPHEA 177

Query: 180 QQFKSFWSEGSQ--PRLAFEFLLYSGLRCSDSCRAGVQHLQ---------------NNIF 222
           +   + +         +A    L  GLR  ++       +                    
Sbjct: 178 EALLAAFDAWPTWGVGMALRLCLALGLRAGEALGLKWGDIDLEAGTLSVRRAWTCLGGRG 237

Query: 223 SIKTQKTG-TIITVELPDGFMKLLA----------MTPIGKETFFI----NNDKQKMNAT 267
            + T KT     T+ +P   +  L           + P   + +++     +  + +N  
Sbjct: 238 HLTTPKTSRAQRTIPVPRATLGRLRDRWETLVAQGLRPKDLKEWWVFPSEKDPSRPLNPH 297

Query: 268 QFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKT 315
             +   +    K G+     H +R    ++    GA    +    G  +
Sbjct: 298 SLNHALRKMTAKLGIPPVRVHDLRHSYGSLLLANGAPLELVAERMGHAS 346


>gi|319792651|ref|YP_004154291.1| integrase family protein [Variovorax paradoxus EPS]
 gi|315595114|gb|ADU36180.1| integrase family protein [Variovorax paradoxus EPS]
          Length = 327

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 46/341 (13%), Positives = 97/341 (28%), Gaps = 44/341 (12%)

Query: 17  RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76
           ++G   Y +   +G+ I L                  +  +   +++          L  
Sbjct: 7   KNGGFTYRYHPFNGKPINLGRDKG------------AAIQQVLDLSNKSTDEGQFSRLWR 54

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE-SRKHTPSSAIQ 135
            Y++   +  LA +++  +   + ++ +            K I   +   R   P  A +
Sbjct: 55  LYQERPEFKRLAESTKAQYRDNWKELEKVFARGVVAATKPKDIARYLRVHRTSAPVVANR 114

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT-------EGIRPWTKEDMQQFKSFWSE 188
            +  +  LF  AV    +  NPC  V R   ++       +   P+    +QQ       
Sbjct: 115 EVALLSNLFNLAVELGDIDRNPCKEVRRNPEESRDRLVEKKEFDPFVAWALQQ----GPS 170

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI----KTQKTGTIITVELPDGFMKL 244
                   +F   +G R ++  +     +   I  +    +  K      + +     ++
Sbjct: 171 NVVLVSMAQFAALTGNRRAEFLKLHWPQVDEEIIRLQRAKQRGKKSKRELIGVSTALQEV 230

Query: 245 LAMTPIG------KETFFINNDKQKMNATQFSIWFKAKATKAGVNK------SAHGVRKF 292
           L               F         +   F   ++    KA   K      + H +R  
Sbjct: 231 LDRMKATEGYSPMGPVFRAPRTNNAYSEAGFKGMWQRLMQKALNEKIIEERFTFHDLRGH 290

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
             T          EL A         A  Y +  +  R  +
Sbjct: 291 YTTYFKLKFGELPELHA----DPKTTAGVYERSREVRRKSL 327


>gi|239995901|ref|ZP_04716425.1| phage integrase [Alteromonas macleodii ATCC 27126]
          Length = 395

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 55/356 (15%), Positives = 117/356 (32%), Gaps = 41/356 (11%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGR--RIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
            FV +      K  YY  K +G+  + ++      +   A + A +  +  +    +   
Sbjct: 34  KFVVRPSG--SKSFYYRAKKNGKDLKRKIGDASTMSLATARLIADSQHSGFKNESQNGVS 91

Query: 67  KPTTLKWL-----ISEYRKSAHWGSLAVN-SRISFESYFD-----QIIRKSGDFDYRKIT 115
            P+++K L        YR+      L    +    +   +      +    G     ++ 
Sbjct: 92  VPSSIKSLTVNCMFELYRE----NELKHRRTVAGRKHALEVAYNLHVKASLGHRAVAQLD 147

Query: 116 TKHIRSGVESRKHTPSSA-IQFLTSMRVLFKWAVRQEYVAI--NPCLSVERPKRKTEGIR 172
            K +RS     +     A  + ++ ++    + +  E   +  NP   +++    T   R
Sbjct: 148 RKEVRSFFRELEDKGYCAHNKAVSVLKAACNYVIDFEDAGLILNPFERIKKMPGVTRS-R 206

Query: 173 PWTKEDMQQFKSFWSEGSQPRLA--FEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKT 226
             T ++  Q        S   +A  +   L++G R ++      + +  +    +     
Sbjct: 207 YLTYQEAGQLMKALEYASNQDVADIYRMALFTGARLTNVKTMEWKDINLSNAVWLIPATR 266

Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKET---FFINNDKQKMNA-TQFSIWFKAKATKAGV 282
            KT  I  + L    + LL        +    F +  K K    T     +KA   +AG+
Sbjct: 267 TKTNQIYEIPLHPLAVYLLRKRQKTCPSSHFVFPSKQKSKYGYITGGDSVWKAAIKRAGL 326

Query: 283 NKS-------AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT-KGADRIR 330
                      H +R+  AT    +GA    +       ++     Y     D++R
Sbjct: 327 YHDNPNIRPRPHDLRRTFATWQIQSGADVSVVSKALCHTSLKHTMVYAYANIDQVR 382


>gi|254425489|ref|ZP_05039206.1| Phage integrase, N-terminal SAM-like domain protein [Synechococcus
           sp. PCC 7335]
 gi|196187912|gb|EDX82877.1| Phage integrase, N-terminal SAM-like domain protein [Synechococcus
           sp. PCC 7335]
          Length = 339

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/292 (14%), Positives = 87/292 (29%), Gaps = 37/292 (12%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVESR 126
              + E+        +  N++ ++             +  GD     ++   +    +  
Sbjct: 33  GDWVDEFLGD---REIRPNTKKAYTRQLRGFQVWCEFKHWGDVSEADVSRYKVHLKNKPT 89

Query: 127 KH-----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
           K      +P+S  Q + +++  FKW   + Y+  NP L+VE+        +      ++Q
Sbjct: 90  KAGKIGLSPASVNQAIATLQSFFKWLATKRYITYNPTLNVEKVPAAPTETKDIEVAAVRQ 149

Query: 182 FKS-------FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234
                          ++    FE  L  GLR ++  +  +         +   K  +  T
Sbjct: 150 LAEGLEYRGQREQLSTRDTAIFEL-LKHGLRATEVSKLNIGDYNGQAVQVSEAKWRSDGT 208

Query: 235 VELPDGFMKLLA----------MTPIGKETFF----INNDKQKMNATQFSIWFKA--KAT 278
           V L     + L                 E  F     N   +++         K      
Sbjct: 209 VPLAPNARQALDSYLGWCVRKGFDTSSGEPLFRSLSRNGYGKRLGYWGIYEMVKDLGAIV 268

Query: 279 KAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
           +   N   H +R    T       +   +      K+   +E YTK A   +
Sbjct: 269 ETTENVHPHRLRHTFGTQLVLNDMSPDYVRKLMRIKSPVTSERYTKRALEKK 320


>gi|329996334|ref|ZP_08302445.1| prophage DLP12 integrase [Klebsiella sp. MS 92-3]
 gi|328539428|gb|EGF65438.1| prophage DLP12 integrase [Klebsiella sp. MS 92-3]
          Length = 387

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 40/242 (16%), Positives = 85/242 (35%), Gaps = 22/242 (9%)

Query: 103 IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAV-RQEYVAINPCLSV 161
           ++         +         + R+ + ++  Q L+ +R L + A     ++   P   +
Sbjct: 116 LQVWESKRDAAMRKGKPVPEYKPRQVSQATKAQHLSFIRSLLRAAANDWGWIKTAPV--I 173

Query: 162 ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN- 220
           +  K  ++ IR  T+E+ ++      E  +P + F     +GLR S+      Q +    
Sbjct: 174 KTRKPISKRIRWLTREEAERLIECMPESIKPVVIFALA--TGLRRSNIIGLEWQQVDMQR 231

Query: 221 ---IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF-FINNDKQKMNATQFSIWFKAK 276
                + +  K G  I V L D   ++L         + F++   +       +   +  
Sbjct: 232 KVAWVNPENAKAGKAIGVALNDTACRVLRDQIGKHSRWVFVHTTAKHRPDGTLTPAVRKM 291

Query: 277 AT------KAGVNK------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
                   +AG+ K        H +R   A+    +G     L    GW++++    Y  
Sbjct: 292 RVDDNNAWRAGLKKAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAH 351

Query: 325 GA 326
            A
Sbjct: 352 LA 353


>gi|262384905|ref|ZP_06078034.1| integrase [Bacteroides sp. 2_1_33B]
 gi|262293457|gb|EEY81396.1| integrase [Bacteroides sp. 2_1_33B]
          Length = 235

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 87/232 (37%), Gaps = 31/232 (13%)

Query: 137 LTSMRVLFKWAVRQEYVAINP------CLSVERPKRKTEGIRPWTKEDMQQ-FKSFWSEG 189
           +  +R ++  AV        P         VE  ++K        +E +++ F +   + 
Sbjct: 1   MRRIRHIYNLAVEANEAPFVPNLFKDVFTGVESKRKK-----ALPREMLERMFNAELEDQ 55

Query: 190 SQPRLAFEFLL---YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL- 245
           S  R+     L   +SG+   D      +++++ I     QK+G++I +E+P G ++LL 
Sbjct: 56  SLRRVQLTVRLMFAFSGIAFVDLTHLKWENIRDGILQYHRQKSGSLIQLEIPSGALRLLD 115

Query: 246 ---AMTPIGKETFFINNDKQK----------MNATQFSIWFKAKATKAG--VNKSAHGVR 290
              A T       F     ++             ++F+   K  A   G  +  +++ +R
Sbjct: 116 ELSACTAKESLYLFPFLSGRRTGEAAYKEYNRTLSRFNHDLKLLARSTGVTLPVTSYTIR 175

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
              A+   +   +   +    G K++   + Y K     RL   N     SV
Sbjct: 176 HSFASFLKEQDVSIEVISELLGHKSIKTTQIYLKSFSLERLSTVNRNCFESV 227


>gi|257428815|ref|ZP_05605210.1| integrase [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257434137|ref|ZP_05610488.1| integrase [Staphylococcus aureus subsp. aureus E1410]
 gi|282914862|ref|ZP_06322643.1| integrase [Staphylococcus aureus subsp. aureus M899]
 gi|282925359|ref|ZP_06333015.1| phage integrase [Staphylococcus aureus subsp. aureus C101]
 gi|293507876|ref|ZP_06667718.1| phage integrase [Staphylococcus aureus subsp. aureus 58-424]
 gi|293510848|ref|ZP_06669548.1| integrase [Staphylococcus aureus subsp. aureus M809]
 gi|293545448|ref|ZP_06672124.1| integrase [Staphylococcus aureus subsp. aureus M1015]
 gi|296277052|ref|ZP_06859559.1| phage integrase [Staphylococcus aureus subsp. aureus MR1]
 gi|257274459|gb|EEV05971.1| integrase [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257281063|gb|EEV11207.1| integrase [Staphylococcus aureus subsp. aureus E1410]
 gi|282312993|gb|EFB43393.1| phage integrase [Staphylococcus aureus subsp. aureus C101]
 gi|282321256|gb|EFB51586.1| integrase [Staphylococcus aureus subsp. aureus M899]
 gi|290919759|gb|EFD96831.1| integrase [Staphylococcus aureus subsp. aureus M1015]
 gi|291094939|gb|EFE25207.1| phage integrase [Staphylococcus aureus subsp. aureus 58-424]
 gi|291466320|gb|EFF08846.1| integrase [Staphylococcus aureus subsp. aureus M809]
          Length = 345

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 50/325 (15%), Positives = 110/325 (33%), Gaps = 26/325 (8%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT--TLKWLIS 76
           GK   Y  K  G+R R               A +    K   + S        TL+    
Sbjct: 8   GKKWQYEFKHEGKRYRKKGFRTK------REANSAGLDKLNELRSGFNIDNYITLEEYFE 61

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRSGVE--SRKHTPSSA 133
            + K+     +  N+   + +    I + K G  +  KI  +  +  +   S++H   + 
Sbjct: 62  NWIKTYKQPVVKENTYRHYRNALQHIQKHKIGKMELSKINRQVYQKFINDYSKEHAKETI 121

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSV-----ERPKRKTEGIRPWTKEDMQQFKSFWSE 188
            +   ++R     A+    +  NP   V     +  K + E     T+ ++ +      +
Sbjct: 122 RKTNGAIRSALDDALYDGLIFKNPAYKVNYKAGKPTKSEQEKFISVTEYEILK-DHVRKK 180

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTG-TIITVELPDG----F 241
            ++  LA   ++ +G R S +    ++H+    N   I  +KT  +   + +        
Sbjct: 181 RTRSSLALFIMICTGCRVSGARNIKIEHINQVKNTIFIDERKTNTSPRYISIAKSDMKHI 240

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADA 300
           M +++   I  + +        +N    +   K+      +   ++H +R    +     
Sbjct: 241 MDVISTFAISYDGYIFKEAGSIINLHAINNALKSACRVNNIPIITSHALRHTHCSYLLAK 300

Query: 301 GATAHELMATYGWKTVD-QAETYTK 324
           G + H +    G K +      Y+ 
Sbjct: 301 GVSIHYISKRLGHKNIAITTSVYSH 325


>gi|160936350|ref|ZP_02083719.1| hypothetical protein CLOBOL_01242 [Clostridium bolteae ATCC
           BAA-613]
 gi|158440633|gb|EDP18371.1| hypothetical protein CLOBOL_01242 [Clostridium bolteae ATCC
           BAA-613]
          Length = 305

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/262 (14%), Positives = 80/262 (30%), Gaps = 19/262 (7%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
           + ++         +  +   +       ++  G  +  K      R+ + SR + P +  
Sbjct: 7   VEQFLDFLKEEEKSDATISKYTYELQMFLQFLGKREIGKELMIQYRTYLSSR-YRPQTVN 65

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI----RPWTKEDMQQFKSFWSEGS 190
             L+++    K+    EY        V+  K +        R  T+++ ++         
Sbjct: 66  GKLSAVNAFLKFTGLYEYR-------VKFLKVQRRAYIDETRELTQKEYERLMETAGRQG 118

Query: 191 QPRLAFEFL--LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE--LPDGFMKLLA 246
           + +L +  +    +G+R S+     V+ +      I  +    I+     L         
Sbjct: 119 KYQLYYLMMTICSTGIRVSELRYVTVEAVMRGKAEIFMKGKYRIVIFPKNLAAQLKAFAR 178

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGAT 303
              I   + F     + ++ +      K    KAGV K     H  R   A     A   
Sbjct: 179 KNGIRSGSLFCTRSGRPLDRSNICHAMKKLCAKAGVKKDKVFPHNFRHLFARSFYAAEKN 238

Query: 304 AHELMATYGWKTVDQAETYTKG 325
              L    G  +++    Y   
Sbjct: 239 MAHLADILGHSSIETTRIYVAA 260


>gi|121606809|ref|YP_984138.1| phage integrase family protein [Polaromonas naphthalenivorans CJ2]
 gi|120595778|gb|ABM39217.1| phage integrase family protein [Polaromonas naphthalenivorans CJ2]
          Length = 327

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/322 (13%), Positives = 99/322 (30%), Gaps = 26/322 (8%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           R R        R+         +P +      +  ++     +  +++    + T+   +
Sbjct: 5   RKRGNGWQVRVRRLGYPDEVKTFPIKLD-AEQWARSIESDMDRGPFVSRNIAEQTSFGDV 63

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGVESRKHT-- 129
           +  Y K      +    R   E        +  K   F    +T + +    + R  +  
Sbjct: 64  MRRYMK-----EITPGKRGCLEETIRLTATLRLKISKFSMVNLTPEVLAEYRDERLKSCQ 118

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYV--AINPCLSVERPKRKTEGIRPWT-KEDMQQFKSFW 186
           PS+ ++ L  +  +   A R+E+     NP   + +P       R  +  +++       
Sbjct: 119 PSTVVRDLAVLSSIINHA-RREWRFPIQNPIEMIRKPTMPPGRDRVLSRTDEVTLLTELL 177

Query: 187 SEGSQPRLA---FEFLLYSGLRCSDSCRAGVQHLQNNIFSI--KTQKTGTIITVELPDGF 241
             G +  L        + + +R  +      +H+  +  ++     K G    V L    
Sbjct: 178 PTGRRNPLMQPIVVIAIETAMRRGEILGLRWEHVDLDQQTVFLPITKNGKSRYVPLSKRA 237

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADA 300
           ++ L           I+     +        F     +  + +   H +R    +  A+ 
Sbjct: 238 VETLRTVDRS-----IDGRVFPIGMAAMEANFLKAVRRGNLGDLHFHDLRHTGTSRMANK 292

Query: 301 GATAHELMATYGWKTVDQAETY 322
                EL A  G  ++   + Y
Sbjct: 293 LPNVIELAAVTGHTSLQMLKRY 314


>gi|69245016|ref|ZP_00603174.1| Phage integrase [Enterococcus faecium DO]
 gi|257879288|ref|ZP_05658941.1| phage integrase [Enterococcus faecium 1,230,933]
 gi|257881894|ref|ZP_05661547.1| phage integrase [Enterococcus faecium 1,231,502]
 gi|258615693|ref|ZP_05713463.1| phage integrase family protein [Enterococcus faecium DO]
 gi|260558732|ref|ZP_05830921.1| phage integrase [Enterococcus faecium C68]
 gi|293563234|ref|ZP_06677687.1| phage integrase family protein [Enterococcus faecium E1162]
 gi|294617960|ref|ZP_06697565.1| phage integrase family protein [Enterococcus faecium E1679]
 gi|294622363|ref|ZP_06701392.1| phage integrase family protein [Enterococcus faecium U0317]
 gi|314937316|ref|ZP_07844656.1| AP2 domain protein [Enterococcus faecium TX0133a04]
 gi|314943381|ref|ZP_07850152.1| AP2 domain protein [Enterococcus faecium TX0133C]
 gi|314949077|ref|ZP_07852439.1| AP2 domain protein [Enterococcus faecium TX0082]
 gi|314953482|ref|ZP_07856398.1| AP2 domain protein [Enterococcus faecium TX0133A]
 gi|314994170|ref|ZP_07859477.1| AP2 domain protein [Enterococcus faecium TX0133B]
 gi|314995980|ref|ZP_07861060.1| AP2 domain protein [Enterococcus faecium TX0133a01]
 gi|68196017|gb|EAN10449.1| Phage integrase [Enterococcus faecium DO]
 gi|257813516|gb|EEV42274.1| phage integrase [Enterococcus faecium 1,230,933]
 gi|257817552|gb|EEV44880.1| phage integrase [Enterococcus faecium 1,231,502]
 gi|260075191|gb|EEW63504.1| phage integrase [Enterococcus faecium C68]
 gi|291595769|gb|EFF27057.1| phage integrase family protein [Enterococcus faecium E1679]
 gi|291598123|gb|EFF29226.1| phage integrase family protein [Enterococcus faecium U0317]
 gi|291604829|gb|EFF34310.1| phage integrase family protein [Enterococcus faecium E1162]
 gi|313589856|gb|EFR68701.1| AP2 domain protein [Enterococcus faecium TX0133a01]
 gi|313591437|gb|EFR70282.1| AP2 domain protein [Enterococcus faecium TX0133B]
 gi|313594515|gb|EFR73360.1| AP2 domain protein [Enterococcus faecium TX0133A]
 gi|313597925|gb|EFR76770.1| AP2 domain protein [Enterococcus faecium TX0133C]
 gi|313643267|gb|EFS07847.1| AP2 domain protein [Enterococcus faecium TX0133a04]
 gi|313644554|gb|EFS09134.1| AP2 domain protein [Enterococcus faecium TX0082]
          Length = 400

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 41/274 (14%), Positives = 90/274 (32%), Gaps = 38/274 (13%)

Query: 109 FDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168
           F+  +  +++ R  V     + S   +    ++++   AV++  +A NP   V     + 
Sbjct: 126 FELSQTESRNSRKKVNGETLSKSYINRIRGHLKIVLDRAVKEGVIAKNPVEDVSSLPSEN 185

Query: 169 EGIRPWTKEDMQQFKSFWSEG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
           + +  W   + Q+  +   +        ++ +E L Y+G+R  +       ++     +I
Sbjct: 186 KKVEFWEHSEFQKVMNELKDDKIQTHHRKIVYEMLFYTGIRIGELEALSWSNVDFEKNTI 245

Query: 225 KTQKT-------------------------GTIITVELPDGFMKLLAMTPIGKETFFINN 259
             +KT                         G  ++++L   +        IG   +    
Sbjct: 246 TIEKTLIYNTKDDWYFSTPKTKCAYRTIGLGKKLSLKLRQWY---DLQKRIGNFEYVAQL 302

Query: 260 DKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           D        F+ W K  A KAGV     H +R        +       +    G   +  
Sbjct: 303 DGTFTPPYSFANWLKEAAKKAGVKPIKLHALRHSHVAFLIEQNIQPLSIQERLGHANIQI 362

Query: 319 A-----ETYTKGADRIRLGIKNSRRISSVVDSDD 347
                   Y K   ++   I N +  + +  +D+
Sbjct: 363 TLGTYGHLYAKSDQQVVSAIDNVQEGAILSKNDN 396


>gi|21283668|ref|NP_646756.1| integrase [Staphylococcus aureus subsp. aureus MW2]
 gi|300912911|ref|ZP_07130349.1| integrase [Staphylococcus aureus subsp. aureus TCH70]
 gi|21205109|dbj|BAB95804.1| integrase [Staphylococcus aureus subsp. aureus MW2]
 gi|300885689|gb|EFK80896.1| integrase [Staphylococcus aureus subsp. aureus TCH70]
          Length = 345

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 50/324 (15%), Positives = 110/324 (33%), Gaps = 24/324 (7%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP-TTLKWLISE 77
           GK   Y  K  G+R R        F     +   G     E  +        TL+     
Sbjct: 8   GKKWQYEFKHEGKRYRKKG-----FRTKREANYAGLDKLNELRSGFNIDNYITLEEYFEN 62

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRSGVE--SRKHTPSSAI 134
           + K+     +  N+   + +    I + K G  +  KI  +  +  +   S++H   +  
Sbjct: 63  WIKTYKQPVVKENTYRHYRNALQHIQKHKIGKMELSKINRQVYQKFINDYSKEHAKETIR 122

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSV-----ERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
           +   ++R     A+   ++  NP   V     +  K + E     T+ ++ +      + 
Sbjct: 123 KTNGAIRSALDDALYDGFIFKNPAYKVNYKAGKPTKSEQEKFISVTEYEILK-DHVRKKR 181

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTG-TIITVELPDG----FM 242
           ++  LA   ++ +G R S +     +H+    N   I  +KT  +   + +        M
Sbjct: 182 TRSSLALFIMICTGCRVSGARNIKTEHINQVKNTIFIDERKTDTSPRYISIAKSDMKHIM 241

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG 301
            +++   I  + +        +N    +   K+      +   ++H +R    +     G
Sbjct: 242 DVISTFAISYDGYIFKEAGSIINLQAINNALKSACRVNNIPIITSHALRHTHCSYLLAKG 301

Query: 302 ATAHELMATYGWKTVD-QAETYTK 324
            + H +    G K +      Y+ 
Sbjct: 302 VSIHYISKRLGHKNIAITTSVYSH 325


>gi|257890116|ref|ZP_05669769.1| phage integrase [Enterococcus faecium 1,231,410]
 gi|257826476|gb|EEV53102.1| phage integrase [Enterococcus faecium 1,231,410]
          Length = 400

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 41/274 (14%), Positives = 90/274 (32%), Gaps = 38/274 (13%)

Query: 109 FDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168
           F+  +  +++ R  V     + S   +    ++++   AV++  +A NP   V     + 
Sbjct: 126 FELSQTESRNSRKKVNGETLSKSYINRIRGHLKIVLDRAVKEGVIAKNPVEDVSSLPSEN 185

Query: 169 EGIRPWTKEDMQQFKSFWSEG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
           + +  W   + Q+  +   +        ++ +E L Y+G+R  +       ++     +I
Sbjct: 186 KKVEFWEHSEFQKVMNELKDDKIQTHHRKIVYEMLFYTGIRIGELEALSWSNVDFEKNTI 245

Query: 225 KTQKT-------------------------GTIITVELPDGFMKLLAMTPIGKETFFINN 259
             +KT                         G  ++++L   +        IG   +    
Sbjct: 246 TIEKTLIYNTKDDWYFSTPKTKCAYRTIGLGKKLSLKLRQWY---DLQKRIGNFEYVAQL 302

Query: 260 DKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           D        F+ W K  A KAGV     H +R        +       +    G   +  
Sbjct: 303 DGTFTPPYSFANWLKEAAKKAGVKPIKLHALRHSHVAFLIEQNIQPLSIQERLGHANIQI 362

Query: 319 A-----ETYTKGADRIRLGIKNSRRISSVVDSDD 347
                   Y K   ++   I N +  + +  +D+
Sbjct: 363 TLGTYGHLYAKSDQQVVSAIDNVQEGAILSKNDN 396


>gi|86140615|ref|ZP_01059174.1| tyrosine type site-specific recombinase [Leeuwenhoekiella
           blandensis MED217]
 gi|85832557|gb|EAQ51006.1| tyrosine type site-specific recombinase [Leeuwenhoekiella
           blandensis MED217]
          Length = 422

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 51/317 (16%), Positives = 113/317 (35%), Gaps = 36/317 (11%)

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR-----KSGDFDYR 112
           ++Y     K   TL  LI  Y      G+LA  +  +F+   + +++     K  D    
Sbjct: 97  KDYFMGDDKSTKTLVQLID-YHSEKIKGTLAKGTIRNFQITENYVLKFLKSNKLEDIFLS 155

Query: 113 KITTK---HIRSGVESR--KHTPSS-----AIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162
           ++  K      S +     K  P +      ++ +  +R + + A   E++  +P    +
Sbjct: 156 RLDYKFICDFESFLVQYYPKGHPRAMSHNTVMKHIQRLRKMIRLAYHLEWLDKDPFRRWK 215

Query: 163 RPKRKTEGIRPWTKEDMQQFKSF---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-- 217
               KT+     ++ ++    ++        + R  F F  Y+G+  +D  +    ++  
Sbjct: 216 TTFEKTD-REFLSEHELSNLATYEFPLERLERVRDLFLFSCYTGISYADLNKLTPNNIWK 274

Query: 218 ---QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ---KMNATQFSI 271
                       QKT T + V L    ++L+      +E             +   + ++
Sbjct: 275 GEDDKKWIVTNRQKTNTRVKVPLMPTALRLIEKY---REHPLTEVSGTLFPPITNERANL 331

Query: 272 WFKAKATKAGVNK--SAHGVRKFSAT-ISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           + K  A   G+ K  + H  R   AT ++   G     +    G   +   + Y +  D+
Sbjct: 332 YLKEIAEACGLTKNLTFHMARHTFATTVTLSNGMPIETVSKLLGHTKIATTQIYARVLDK 391

Query: 329 IRLGIKNSRRISSVVDS 345
                ++  ++  V+ S
Sbjct: 392 K--VEEDMNKLQEVLQS 406


>gi|315268238|gb|ADT95091.1| integrase family protein [Shewanella baltica OS678]
          Length = 318

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 53/322 (16%), Positives = 107/322 (33%), Gaps = 38/322 (11%)

Query: 12  TKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
            +   R+GK    +R+              T    Y   +      ++++++P  +   L
Sbjct: 14  IRPSGRNGK---RYRRTF---------ETKTEATKYEKFILSQHHNKDWLDAPIDRRPLL 61

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHT 129
           + LI  +    H+    +   ++         +  G+    ++ T    +    R  K T
Sbjct: 62  E-LIDLWF---HFHGKNLKEGVNTRKNLITTCKLMGNPQSHQVNTNFYLNYRARRLEKIT 117

Query: 130 PSSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           P +A   LT ++ ++   +    Y   +P  S    K + +     TK  + Q  +  S 
Sbjct: 118 PKTANLELTRLQGVYSVLIAAGEYAGEHPLKSAPPIKLQAKDQSFLTKPQIAQLLALLS- 176

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248
             +  L  +  L +G R S++       L ++  +    K G   T+ +   F   L   
Sbjct: 177 -GEMLLIVKICLSTGARWSEAQNLTSSQLLDDRINFINTKNGKNRTIPITREFRAEL--- 232

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV----NKSAHGVRKFSATISADAGATA 304
           P G    F +              F A    +G+     +++H +R   A+     G   
Sbjct: 233 PNGNGRLFADCY----------HQFLAVLKSSGIVLPKGQASHVLRHTFASHFVMNGGNI 282

Query: 305 HELMATYGWKTVDQAETYTKGA 326
             L    G  ++     Y   A
Sbjct: 283 LTLQKILGHGSIQMTMRYAHLA 304


>gi|298388238|ref|ZP_06997757.1| integrase/recombinase XerD [Bacteroides sp. 1_1_14]
 gi|298259004|gb|EFI01909.1| integrase/recombinase XerD [Bacteroides sp. 1_1_14]
          Length = 160

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 45/140 (32%), Gaps = 7/140 (5%)

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLL---AMTP 249
            F  L  +GLR S+        +  +     ++  K        L    MK L       
Sbjct: 1   MFSILYSAGLRISELLELKPGDINESRSLIRVRQGKGKKDRYTLLSKPLMKKLTEYNRLY 60

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHEL 307
             K   F +   +    +  S   KA A +AG+ K    H +R   AT   + G     +
Sbjct: 61  KPKVWLFEHRPGEPFTESIVSKRLKAAAREAGITKRIYPHLLRHSFATHLLEQGTDIKIV 120

Query: 308 MATYGWKTVDQAETYTKGAD 327
               G   +   E Y   AD
Sbjct: 121 KELMGHNNIKTTERYVHIAD 140


>gi|189459809|ref|ZP_03008594.1| hypothetical protein BACCOP_00438 [Bacteroides coprocola DSM 17136]
 gi|189433419|gb|EDV02404.1| hypothetical protein BACCOP_00438 [Bacteroides coprocola DSM 17136]
          Length = 413

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 40/276 (14%), Positives = 99/276 (35%), Gaps = 40/276 (14%)

Query: 86  SLAVNSRISFESYFDQIIR------KSGDFDYRKITTKHIRSGVESRKHTP----SSAIQ 135
             +  +   +++   ++        +  D  + +++   I++     K       ++ ++
Sbjct: 130 DYSPVTINRYKNVLRKLETFVPCFYEKDDITFHELSPDFIKAFDVFLKTEAGLCRNTIVR 189

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL- 194
           ++  ++ +   A+ +E++  +P    +  + +T+     T  ++Q   +   E   PRL 
Sbjct: 190 YMKCLKKITNMAIAKEWMRKDPFYGYKMEQDETD-PVFLTNNELQAIMNR--EFDIPRLE 246

Query: 195 ----AFEFLLYSGLRCSDSCRAGVQHLQNN-----IFSI------KTQKTGTIITVELPD 239
                F F  ++GL  +D      +HL+ +               + +K+ +I  V L  
Sbjct: 247 LVKDIFLFACFTGLAFADVSTLRPEHLEQDNNGDWWIRKGRVKLERRRKSSSIANVPLLP 306

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNA---TQFSIWFKAKATKAGVNK--SAHGVRKFSA 294
             + +L      +           +      + + + K  A   G+ K  + H  R   A
Sbjct: 307 VPLAILKKY---ESHPICLKQGTCLPVVCNQKANSYLKEIADFCGIKKNLTTHAARHTFA 363

Query: 295 TI--SADAGATAHELMATYGWKTVDQAETYTKGADR 328
           T    A+      E+ A  G  +    + Y +  DR
Sbjct: 364 TTVTLANN-VPLQEVSAMLGHASTRMTQHYARVMDR 398


>gi|108761635|ref|YP_633012.1| phage integrase family site specific recombinase [Myxococcus
           xanthus DK 1622]
 gi|108465515|gb|ABF90700.1| site-specific recombinase, phage integrase family [Myxococcus
           xanthus DK 1622]
          Length = 334

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 39/249 (15%), Positives = 68/249 (27%), Gaps = 23/249 (9%)

Query: 109 FDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP-KRK 167
            D         R   E +  +  +    LT +  L   A     +   P   V+   K  
Sbjct: 70  KDSASKRAIRKRQRSEPKPLSLKTINNVLTVLHKLLTLAEEHGVIRQAP--RVKPFGKLP 127

Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK 225
                  + E+  Q  +      + R      + +GLR  +        L     +  ++
Sbjct: 128 KPPFDFLSFEEADQLLAVAEP--EWRTLLRVAIKTGLRQGELIGLRWHDLTLTRGLLHVR 185

Query: 226 TQ---------KTGTIITVELPDGFMKLLAM-TPIGKETFFINNDKQKMNATQFSIWFKA 275
                      K G   TV+LP   +  L           F   D Q +   + +     
Sbjct: 186 RTIWRGIEGLPKGGRERTVDLPASVVDALNAHRHRRGRFVFCQEDGQPLTKGKMAAPLGR 245

Query: 276 KATKAGVNK-----SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRI 329
               AG+ +       H +R    +  A  G     +    G  T++    Y     D  
Sbjct: 246 ALRAAGITREVGQIGWHDLRHTYGSHLAMRGIPLKVIQELIGHATIEMTNRYAHLSPDTR 305

Query: 330 RLGIKNSRR 338
           R  +    R
Sbjct: 306 REAVAVLDR 314


>gi|34335022|gb|AAQ64997.1| unknown [synthetic construct]
 gi|301159296|emb|CBW18811.1| bacteriophage integrase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|323131081|gb|ADX18511.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
          Length = 341

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/268 (13%), Positives = 73/268 (27%), Gaps = 37/268 (13%)

Query: 83  HWGSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGVESRKH----------- 128
            W SL   +    +    +   I    GD    ++T        E+R             
Sbjct: 67  QWHSLYGQTLADPKRLMSKLSIICHGLGDPIASELTAGDFTKYREARLKGEVRSEDGALM 126

Query: 129 ---TPSSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
               P +      ++  +F    +   + A NP   +   K     +     +++++   
Sbjct: 127 SPVKPRTVNLEQRNLSSVFGTLKKLGHWSAPNPLAGLPTFKIAEGELAFLAPDEIKRLLD 186

Query: 185 FWSEGSQPRLAF--EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
             ++   P L    +  L +G R S++       +     +    K     TV +     
Sbjct: 187 ACADSQSPSLLMITKICLSTGARWSEAENLQGHQVSKYRITYTKTKGKKNRTVPISQDLY 246

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV----NKSAHGVRKFSATISA 298
             +             N  +          F+    +AG+     +  H +R   A+   
Sbjct: 247 DEIPR-----------NRGKLFTP--CRKAFERAIKRAGIELPEGQCTHVLRHTFASHFM 293

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGA 326
             G     L    G   +     Y   A
Sbjct: 294 MNGGNILVLRDILGHADIKMTMIYAHFA 321


>gi|317481410|ref|ZP_07940477.1| phage integrase [Bacteroides sp. 4_1_36]
 gi|316902395|gb|EFV24282.1| phage integrase [Bacteroides sp. 4_1_36]
          Length = 410

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/259 (16%), Positives = 91/259 (35%), Gaps = 27/259 (10%)

Query: 90  NSRISFES---YFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKW 146
           N+   + S    F   +   G  + ++IT +H+   + S++       + L+ +R LF +
Sbjct: 125 NTLKHYRSCLGNFLYYLDMIGVQNIKQITEEHVIRFLSSQQLNRE---KTLSIIRCLFLF 181

Query: 147 AVRQEYVA--INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLAFEFLL 200
             ++  +        +  + ++K      +T E+++  ++  S     G +         
Sbjct: 182 WRQENIIDGRFEEFFATYKLRKKERIPSYYTTEEIKVIENSVSRSSALGKRNYAMILLAS 241

Query: 201 YSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLL------AMTPIGK 252
             GLR SD        +   N++  ++ QKTG  I + L       +             
Sbjct: 242 RLGLRASDIMSLKFSDIDWDNDLIRLRIQKTGKTIELPLLADVGNAIIDYLRYGRPASTS 301

Query: 253 ETFFINNDKQ--KMNATQFSIWFKAKATKAGVN-----KSAHGVRKFSATISADAGATAH 305
           +  F+++         +            +GVN        H +R   A+   + GAT  
Sbjct: 302 QNIFLSSRAPYIAATQSMVCGNINKIIRLSGVNIDKKRHGPHSLRHSLASNMLENGATMP 361

Query: 306 ELMATYGWKTVDQAETYTK 324
            +    G +  +   TY K
Sbjct: 362 IISEVLGHRNTETTMTYLK 380


>gi|314939501|ref|ZP_07846733.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133a04]
 gi|314944175|ref|ZP_07850820.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133C]
 gi|314951902|ref|ZP_07854934.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133A]
 gi|314994468|ref|ZP_07859747.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133B]
 gi|314997872|ref|ZP_07862773.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133a01]
 gi|313588097|gb|EFR66942.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133a01]
 gi|313591123|gb|EFR69968.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133B]
 gi|313595936|gb|EFR74781.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133A]
 gi|313597237|gb|EFR76082.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133C]
 gi|313641202|gb|EFS05782.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133a04]
          Length = 381

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 50/327 (15%), Positives = 112/327 (34%), Gaps = 44/327 (13%)

Query: 59  EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTK 117
           E     ++   T K +   + +S    ++   +++  E  F+  I+ K G F  ++ITTK
Sbjct: 57  EENGLKKETNETFKEVYDLWYESYK-TTVKEVTQLKIEIKFNKWILPKYGQFRIKEITTK 115

Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR----KTEGIRP 173
           H++  +     T        ++   +FK+A+    +  NPC  V  P R    K + ++ 
Sbjct: 116 HVQKILNQWAKTTDQYKVLHSTASRIFKYAMTLGIITKNPCELVIMPNRNVEKKKDTVKI 175

Query: 174 WTKEDMQQFKSFWS------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227
           ++++ ++    +             +    FL +SG R S++       +  N  ++   
Sbjct: 176 YSRDQLESLFQYLESKRSTYRADYDKTLLRFLFFSGCRISEALALDWSDIDFNSNTVTIN 235

Query: 228 KT------GTIITVELP--------------DGFMKL--------LAMTPIGKETFFINN 259
           KT      G  I+                  +   K         L +        F   
Sbjct: 236 KTLSQTKYGYKISSPKTRNSYGSLSLDNKTINWLKKWQINQKRYMLTLGITDPTMIFCGI 295

Query: 260 DKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVD- 317
            K+ +               +G+     H  R   A++  ++G +  E+       ++  
Sbjct: 296 YKEIITKHAIYSRMITICKNSGIPFLGNHVTRHTHASMLLESGVSMKEVQERLRHSSIKL 355

Query: 318 QAETYTKGADRIRLGIKNSRRISSVVD 344
             +TY       +   K   +++  ++
Sbjct: 356 TMDTYAHLTKETK--EKTVEKLAEHLN 380


>gi|312870846|ref|ZP_07730951.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LEAF 3008A-a]
 gi|311093536|gb|EFQ51875.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LEAF 3008A-a]
          Length = 329

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/248 (13%), Positives = 75/248 (30%), Gaps = 14/248 (5%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHTPSSAIQFLTSMRVL 143
           +  S   + +  + +  K    + R++ T  +R+ +    + +  +  +       +   
Sbjct: 68  SEKSLTYYRATIEVMTTKI-KKNVREMETDDLRTYLTEYQQEKNSSKVTVDNIRRILSSF 126

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203
           F W   + Y+  +P   + + K        +T E +++      E  +     + L  +G
Sbjct: 127 FSWLEDENYILKSPARRIHKVKAALTIKETYTDEALEKMHDSCDEP-RDLALIDILASTG 185

Query: 204 LRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDG----FMKLLAMTPIGKETFFIN 258
           +R  +        +       +   K      V          +  L          F++
Sbjct: 186 MRVGELVLLNRDDINFEERECVVFGKGSKERMVYFDARTKIHLLTYLQGRTDDNPALFVS 245

Query: 259 NDKQKMNAT--QFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKT 315
                            +    K  + K   H  R+  AT++ D G    +L    G K 
Sbjct: 246 LRAPHDRLKIGGVECRLRELGNKLNIEKVHPHKFRRTLATMAIDKGMPIEQLQQLLGHKR 305

Query: 316 VDQAETYT 323
           +D    Y 
Sbjct: 306 IDTTLRYA 313


>gi|152993025|ref|YP_001358746.1| phage integrase family site specific recombinase [Sulfurovum sp.
           NBC37-1]
 gi|151424886|dbj|BAF72389.1| site-specific recombinase, phage integrase family [Sulfurovum sp.
           NBC37-1]
          Length = 366

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/275 (15%), Positives = 93/275 (33%), Gaps = 27/275 (9%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
           I +Y +        + +        ++I+      D R+I    +R+ + S      +  
Sbjct: 62  IEKYARLYLLKKENLKTYWEIHRRVEKIVEFFNKRDIREIKVSELRAWLSSFDVATKTLK 121

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR--PWTKEDMQQFKSFWSEGSQP 192
            ++   + +F+ A+ +E ++ NP + ++  K   E     P+T +++Q          + 
Sbjct: 122 SYVVDCKGIFQVALEEEILSKNPFVHIKVVKNGKESEEVIPFTSQEVQTILEHAPRPLKN 181

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ---------KT-GTIITVELPDGFM 242
            LA     Y+G+R  +     +  + +   ++K           KT  +I  V L D   
Sbjct: 182 FLA--IGFYTGMRSGEILGLQLSDIYDKRITVKRSISRGVISTPKTVKSIREVPLFDVLR 239

Query: 243 KLL----AMTPIGKETFFINNDKQK-------MNATQFSIWFKAKATKAGVNKSAHGVRK 291
             L          K  +  +N+ +             + +W K  +      +  +  R 
Sbjct: 240 PYLNEQVQTARKLKSVYLFSNEGRHLYSVDTIRGKKPYGVWAKLLSDLEIPYRKIYNTRH 299

Query: 292 FSATISADAG-ATAHELMATYGWKTVDQA-ETYTK 324
              T    +G  +  E+    G        E Y +
Sbjct: 300 TFITAMLKSGELSVLEIAQIVGHTNSKMILENYAR 334


>gi|153830812|ref|ZP_01983479.1| integrase [Vibrio cholerae 623-39]
 gi|148873696|gb|EDL71831.1| integrase [Vibrio cholerae 623-39]
          Length = 392

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/268 (16%), Positives = 82/268 (30%), Gaps = 19/268 (7%)

Query: 93  ISFESYFDQIIRKSGDFDYRKIT--TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQ 150
             +  + +    +   +         +H          + ++A  +   +R     A R 
Sbjct: 125 HRYHRHAELTFEQVDKYFLEGFRHYLQHEAMTKSDTGLSRNTACSYFNKIRAALNQAQRD 184

Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210
             +   P   V+  K +       T ++++            R AF F   +GLR SD  
Sbjct: 185 RIIRDTPVEQVKSIKAERTQRTYLTLDEVKALTKAECRYDVLRRAFLFSCTTGLRWSDIH 244

Query: 211 RAGVQHLQN-----NIFSIKTQK----TGTIITVELPDGFMKLLAMTPIGKETFFINNDK 261
           +     ++              K       +  ++LPD  ++LL +   GK T       
Sbjct: 245 KLVWGEIELFAQGHYRIIFSQIKLKNSGNGLQYLDLPDSAVRLLNLENRGKPT---ERVF 301

Query: 262 QKMNATQFSI-WFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           + +    +S       A +AG+ K  + H  R   A      G   + L    G   +  
Sbjct: 302 KGLRYDSYSNVALVQWAIRAGITKHVTFHAGRHTFAVNQLARGLDIYSLSRLLGHSELRT 361

Query: 319 AETYTKGADRIRLGIKNSRRISSVVDSD 346
            E Y    +  R   +  R    + D  
Sbjct: 362 TEIYADILETRR--TEAMRTFPDIFDEP 387


>gi|94970788|ref|YP_592836.1| phage integrase [Candidatus Koribacter versatilis Ellin345]
 gi|94552838|gb|ABF42762.1| phage integrase [Candidatus Koribacter versatilis Ellin345]
          Length = 379

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 51/338 (15%), Positives = 110/338 (32%), Gaps = 42/338 (12%)

Query: 25  FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHW 84
           +R+  G R    +           + L+G   +       R  P         + K    
Sbjct: 43  YRRKAGTR---SWGEAENVKRELEAQLSGRVTETPAAPEQRLLPE----ATELFLKDKKV 95

Query: 85  GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTK---HIRSGVESRKHTPSSAIQFLT 138
             ++      +    D++     ++G +  + IT +      +  ES   + S+  +   
Sbjct: 96  QGVSKGVLGKYTRELDRLRTHCERAGVYTAQGITRELLTEFAATWESVYPSSSTRSKVRE 155

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR--PWTKEDMQQFKSFW-------SEG 189
             R   ++    +++   P L    PK + +     P T  + ++             + 
Sbjct: 156 RCRAFLRYCYECQWIPRIPAL----PKIQVDEPETMPLTDAEFKRLLDATYAEVSDTDQR 211

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHL------QNNIFSIKTQKTGTIITVELPDGFMK 243
           ++    F+ + +SGL   D+ R     +        +      QKTGT ++V +P    +
Sbjct: 212 ARVHALFQLMRWSGLAIGDALRLERSRVIHDEGKGVHRVVTARQKTGTPVSVPIPPDVAE 271

Query: 244 LLAMTPIGKETF-FINNDKQK------MNATQFSIWFKAKATKAGVNKSAHGVRKFSATI 296
            +     G   + F +   +        +       F+    ++  N  +H +R   A  
Sbjct: 272 EVLKVLNGNPRYVFWSGKGEPESISKNWSKYYVRPCFEGAKIESNGNMMSHRLRDTFACD 331

Query: 297 SADAGATAHELMATYGWKTVDQAET-YTK--GADRIRL 331
               G    E+    G +++   E  Y K   A + RL
Sbjct: 332 LLQKGVPLEEVSKLLGHESIKTTERSYAKWIQARQDRL 369


>gi|257087242|ref|ZP_05581603.1| site-specific recombinase [Enterococcus faecalis D6]
 gi|307270291|ref|ZP_07551599.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX4248]
 gi|256995272|gb|EEU82574.1| site-specific recombinase [Enterococcus faecalis D6]
 gi|306513345|gb|EFM81969.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX4248]
 gi|315026044|gb|EFT37976.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX2137]
          Length = 382

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 53/350 (15%), Positives = 118/350 (33%), Gaps = 43/350 (12%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSA----LTGSTPKREYINSP 64
            +V     + G   + +R  +   ++           +  +A    L           S 
Sbjct: 11  KYVFSYSNKKG-TFWGYRYPYYNSLKHRKEASKRGFESERAANKALLKIQYALETQNTSF 69

Query: 65  RKKPT-TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIR-- 120
            +    T+   I  +   A   + +V+++ + ES     I    G+     +     +  
Sbjct: 70  IENKQLTIDEWIDVWIPYAQ-DNWSVSTKQNIESAIKFHISPLIGNQKLSSLNKITYKRE 128

Query: 121 ---SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
                 +  K+T S+   +   +  +   AV  + +  N     +     +  +R ++K+
Sbjct: 129 FIDKLRQKNKYTESTIQTWHKIVMRMINAAVHNQIIPSNTLTGFKF--DLSNNVRSFSKK 186

Query: 178 DMQQFKSFWS-EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ------------NNIFSI 224
           ++Q+F +    E  Q ++ F  LL SG+R  +        +              +    
Sbjct: 187 ELQRFVAVLENEDIQTQVIFLTLLKSGMRKGELMGLRWSDIDLTEKYFDINSTRGDYGEN 246

Query: 225 KTQKTGTIITVELPDGFMKLLAMTP--------------IGKETFFINNDKQKMNATQFS 270
           K +   +I  V   +  + L+                    K+ F +++    +  ++ +
Sbjct: 247 KPKTKTSIRKVYFDNSLLTLIKKYKNHEKERLFREGIILSDKDYFILSSRNLPIKQSRIT 306

Query: 271 IWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
             F+    KA V N + HG+R   AT   +AGA    +    G K ++  
Sbjct: 307 YMFRLLCEKAEVQNITVHGLRHTHATFLIEAGANIKYVSTRLGHKNINIT 356


>gi|210617226|ref|ZP_03291470.1| hypothetical protein CLONEX_03692 [Clostridium nexile DSM 1787]
 gi|210149427|gb|EEA80436.1| hypothetical protein CLONEX_03692 [Clostridium nexile DSM 1787]
          Length = 409

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 52/338 (15%), Positives = 99/338 (29%), Gaps = 65/338 (19%)

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISF-ESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
           K  TL  L   Y  +     LA  +R+S+  ++ +++  + G+    ++   HI++    
Sbjct: 73  KKMTLNTLFERYMAT---RELADTTRVSYVRAWENRVKDEIGNIKVVQLLPSHIKAYYAK 129

Query: 126 RKHTPSSAIQFLTSMRVLF---KWAVRQEYVAINPCLS-VERPKRKTEGIRPWTKEDMQQ 181
                 +         +L+   + AV  + +  NP  S +    +  E     T    ++
Sbjct: 130 LSKAGYAYSTIKYIHNLLYPALEMAVDDDIIRKNPAKSSISDYGKPAEEKEALTVSQQEK 189

Query: 182 FKSFWS---EGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-------------------QN 219
           F  F       +     F  ++ +GLRC +      + +                     
Sbjct: 190 FMEFVKQSNVYNTYYPMFTIMIGTGLRCGELIGLTWKDINIKAKTVNVDHQLIYKNLGDG 249

Query: 220 NIFSIKTQKTGTIIT-VELPDGFMKLLAMTPIGKETF---------------FINNDKQK 263
             F I T KT + I  +       K                           F     + 
Sbjct: 250 CKFHISTPKTESGIRIIPTTQEVAKAFEEQRKINFMLAKDKSIEVDGYSGFVFTAKSGRP 309

Query: 264 MNATQFSIWF----------------KAKATKAGVNK-SAHGVRKFSATISADAGATAHE 306
           +     +                   K       + K SAH +R  + T  A+       
Sbjct: 310 LMPNGVNSVLYNIVDAYNKTEVERAKKEHRKAELLPKFSAHVMRHTACTRMAECRMDVKV 369

Query: 307 LMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVV 343
           L    G   +D   E Y    +  R+  +   R+ S+V
Sbjct: 370 LQYIMGHAHIDVTMEVYNHIGELTRIENE-IARLDSMV 406


>gi|39933259|ref|NP_945535.1| site-specific tyrosine recombinase XerC [Rhodopseudomonas palustris
           CGA009]
 gi|39652884|emb|CAE25626.1| putative site-specific recombinase, INTEGRASE/RECOMBINASE RIPX
           (xerC) [Rhodopseudomonas palustris CGA009]
          Length = 371

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/280 (13%), Positives = 86/280 (30%), Gaps = 35/280 (12%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDF--------DYRKITTKHIRSGVESRKH---TPSSA 133
             L+  +  ++     Q ++              + ++    +R+ + +R+       S 
Sbjct: 83  RRLSGKTLEAYARDVRQFLQFLAGHWGGEVTLGRFARLEATDVRAFMAARRADEIAGRSL 142

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
           ++ L  MR   ++  R+    +    SV  PK K    +P      ++         + R
Sbjct: 143 MRALAGMRSFGRFLEREGKGRVGALASVRAPKIKKSLPKPLPIAAAKRLADADERAGEER 202

Query: 194 ---------LAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTI-------I 233
                         L  SGLR S++     + +    + +   +  +   T        +
Sbjct: 203 ETWVLIRDAAVMALLYGSGLRISEALGLKRRDVPAPGKGDTLIVHGKGNKTRMVPVLQNV 262

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRK 291
             ++ +         P     F +      ++     +  +      G+    + H +R 
Sbjct: 263 LAQIAEYAAACPYNLPPDGPMF-VGARGGPLSPRIIQLAMERLRGGLGLPDSATPHALRH 321

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
             AT     G     +    G  ++   + YT G D  RL
Sbjct: 322 SFATHLLSRGGDLRAIQELLGHASLSTTQVYT-GIDTERL 360


>gi|86130576|ref|ZP_01049176.1| phage integrase family protein [Dokdonia donghaensis MED134]
 gi|85819251|gb|EAQ40410.1| phage integrase family protein [Dokdonia donghaensis MED134]
          Length = 417

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 46/282 (16%), Positives = 105/282 (37%), Gaps = 29/282 (10%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISF---ESYFDQII---RKSGDFDYRKITTK---HIR 120
           +L+ LI  Y       +LA  +  +F   E+Y ++ +   +K+ D   +++  K      
Sbjct: 109 SLQNLI-AYHSKKIENTLAKGTIRNFGVTENYLNKFLNKVKKTTDIYLKELDYKFLCDFE 167

Query: 121 SGV-------ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
           + +         +  + ++ ++ +  +R +   A   E++  +P +  +    K +    
Sbjct: 168 NYLANYWPVGHPKALSQNTIMKHIQRLRKMVTLAYHMEWIPRDPFVRWKPVYEKKQ-REF 226

Query: 174 WTKED---MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-----QNNIFSIK 225
            ++ +   M+ F+       + R  F F  Y+G+   D      ++L       N    K
Sbjct: 227 LSENELLNMETFEFSIERLERVRDLFVFSCYTGISYVDIMNLTEENLVLGMDGGNWIYTK 286

Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284
            QKT + + V L     ++++       T         +   + +++ K  A   G+ K 
Sbjct: 287 RQKTKSAVKVPLLGKAEEIISKYERHPMTEITGTLLPVITNEKLNVYLKEVAHFVGIKKN 346

Query: 285 -SAHGVRKFSA-TISADAGATAHELMATYGWKTVDQAETYTK 324
            + H  R   A TI+   G     +    G   +   + Y +
Sbjct: 347 LTFHMARHTFATTITLSNGVPIETVSKLLGHSKIATTQIYAR 388


>gi|226325764|ref|ZP_03801282.1| hypothetical protein COPCOM_03577 [Coprococcus comes ATCC 27758]
 gi|225205888|gb|EEG88242.1| hypothetical protein COPCOM_03577 [Coprococcus comes ATCC 27758]
          Length = 366

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 53/336 (15%), Positives = 99/336 (29%), Gaps = 41/336 (12%)

Query: 20  KIIYYF--RKGHGRRIRLPYPHESTFIPAY-MSALTGSTPKREYINSPRKKPTTLKWLIS 76
           ++IY F   KG  ++ +           A+   A+     K +          T      
Sbjct: 13  RVIYRFTNWKGERKQTQKRGFATKREAQAWEHEAMLKQGAKLD---------MTFASFFE 63

Query: 77  EYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR------KHT 129
            Y        +  ++  S       +I+   G+    +I  K I +           K  
Sbjct: 64  VYEADKK-QRVKESTWESKSHIIRTKILPYFGNRKIAEIEAKDIIAWQNELMAYRDEKGK 122

Query: 130 PSSAIQFLTSMRVL---FKWAVRQEYVAINPCLSV-ERPKRKTEGIRPWTKEDMQQFKSF 185
             SA    T    L   F  AV    +  NP            + +  WTKE+  +F   
Sbjct: 123 SYSADYLKTIHAQLTAIFNHAVNFYNLPYNPARRAGTMGNEVPKEMDFWTKEEYLKFSEA 182

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT---------------- 229
             +  +   AFE L + G+R  +              ++   KT                
Sbjct: 183 MMDKPRSYYAFEMLYWCGIRSGELLALTPADFDFQKQTVTISKTFHRSKGSDIITSPKTK 242

Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHG 288
            +  T+++P    + +            N     +  +  +   +  A +AGV K   H 
Sbjct: 243 KSNRTIKMPPFLCEEMQEYIKMLYDIQPNERLFTVTKSYLNHEMERGAKQAGVKKIRVHD 302

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +R  + ++  D G +   +    G +       Y  
Sbjct: 303 IRHSAVSLLIDMGFSVLAIGDRMGHEAEKITYRYAH 338


>gi|212712846|ref|ZP_03320974.1| hypothetical protein PROVALCAL_03943 [Providencia alcalifaciens DSM
           30120]
 gi|212684538|gb|EEB44066.1| hypothetical protein PROVALCAL_03943 [Providencia alcalifaciens DSM
           30120]
          Length = 377

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 53/362 (14%), Positives = 111/362 (30%), Gaps = 58/362 (16%)

Query: 9   PFVTKERT-RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK 67
           P +  +   R+GK+ + +      +  L     S    A  +A   S           K+
Sbjct: 13  PNLYCKLDKRNGKVYWQY------KHPLTGTFHSLGTDAEEAAQVASQANTIIAEQQTKQ 66

Query: 68  PTTLKW----------------LISEYRK----SAHWGSLAVNSRISFESYFDQIIRKSG 107
             ++                   I +Y +          L  NS        +   +  G
Sbjct: 67  ILSINDRLSGIKNKKLGISVTNWIDKYLEVQKDRLDAQELKFNSYKQKIKPLNLFRQHCG 126

Query: 108 DFDYRKITTKHIRSGVESRK--HTPSSAIQFLTSMRVLFKWAVRQEYVAI--NPCLSVER 163
               + IT   I   ++  K       A      +  +FK A    +V    NP L+ ++
Sbjct: 127 TLSLKDITALEISRIIDEVKMLGHDRMAQVVRMVLIDVFKEAQHFGHVPPGYNPALATKQ 186

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA-FEFLLYSGLRCSDSCRAGVQHLQNNIF 222
           P+ + +  R    ++ +   +                + +G R  D  +     + +++ 
Sbjct: 187 PRNRIKRER-LNFDEWKVIYAQAENHPPYLQCGMLLAIVTGQRIGDIVKMKFSDIWDDML 245

Query: 223 SIKTQKTGTIITVEL-------PDGFMKLL-AMTPIGKETFFIN--------NDKQKMNA 266
            I+ +KTG+ + + L            +++          + I+           +++ A
Sbjct: 246 HIEQEKTGSKLAIPLSIRCDAINMTLKQVISQCRDSVVSPYLIHYRHTTSQAKRGEQVTA 305

Query: 267 TQFSIWFKAKATKAGVNK------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
              +  FK    K G+        S H  R  S  +  + G    +L    G K+    +
Sbjct: 306 NTLTTTFKKARDKCGLTWAEKSAPSFHEQRSLSERLYREQGINTQKL---LGHKSQKMTD 362

Query: 321 TY 322
            Y
Sbjct: 363 KY 364


>gi|123442090|ref|YP_001006073.1| phage integrase [Yersinia enterocolitica subsp. enterocolitica
           8081]
 gi|122089051|emb|CAL11869.1| phage integrase [Yersinia enterocolitica subsp. enterocolitica
           8081]
          Length = 351

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/199 (18%), Positives = 67/199 (33%), Gaps = 10/199 (5%)

Query: 50  ALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF 109
           AL           + + +  T+   +  Y +      LA N+          I ++ G+ 
Sbjct: 65  ALLERLQAPAPTPAAKAEINTVASWLKRYSELLKRRELAENTMKMRVLQIGYIKQEFGER 124

Query: 110 DYRKITTKHIRSGVESRKHTPSS--AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167
               +TTKHI   + +      S  A+   + +  +F+ A+    ++ NP  +   P  K
Sbjct: 125 PIETVTTKHIADFINTYVDNGKSSMAVNLRSVLSDVFREAIADGLISTNPVEATRTPSPK 184

Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPR----LAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223
            +  R     D   F   +    Q R    L+    L +G R  D  +     + +    
Sbjct: 185 VKRERL----DYAAFCKIYEAAGQQRNWVQLSMALALITGQRRDDVRQLKRSDVHDGKLW 240

Query: 224 IKTQKTGTIITVELPDGFM 242
           I   KT   I + L     
Sbjct: 241 IVQSKTKMQIAISLSLRLE 259


>gi|315163811|gb|EFU07828.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX1302]
          Length = 392

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 57/393 (14%), Positives = 124/393 (31%), Gaps = 74/393 (18%)

Query: 1   MTPSLRLPPFVTKERTRHGKIIYYFR--KGHGRRIRLPYPHESTFIPAYMSALTGSTPKR 58
           M    R            G++ +YF+  +   R  +     +  F+      L  S  KR
Sbjct: 1   METKDRFKKH----IGASGEVTWYFQAFRTTRRGFKTKREAQLEFLE-----LKKSRQKR 51

Query: 59  EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH 118
           +   +  +K + +      Y KS +     +++          + R  G+     +T   
Sbjct: 52  KKFVNSNEKFSLVADQWFMYYKSLN--EQKISTYDKRSELVGTLNRWLGEKKLIDLTPDF 109

Query: 119 IRSGVESRKHT------PSSAIQFLTSMR----VLFKWAVRQEYVAINPCLSVERPKRKT 168
           +   + S K           A   L S+R    ++FK+ V++  ++ NP  +V  PK + 
Sbjct: 110 LEELMFSLKERGIDGESQGYAKNTLYSLRQTLNMIFKYCVKKGILSDNPLTNVPMPKYQK 169

Query: 169 EGI-----------RPWTKEDMQQFKSFWSEGSQPRLA--FEFLLYSGLRCSDSCRAGVQ 215
                         +  T ++++   ++     +  LA  F  L Y+G R S++     +
Sbjct: 170 SVTDLKRSLNSLDEKYLTIDELRMLLNYSILHEELPLATLFYVLFYTGCRISEALALQKE 229

Query: 216 HLQ---------------NNIFSIKTQKTGTI-------ITVELPDGFMKLLAMTP---- 249
            +                      K + T ++       +T  + +  ++L+ +      
Sbjct: 230 DIDFENNEILFYKQTSVKGKQIDFKIETTKSVSSARRVVVTDLVMEKLLQLITVLDNLNS 289

Query: 250 -----IGKETFFI----NNDKQKMNATQFSIWFKAKATKAGVNKSAHG--VRKFSATISA 298
                + +   F+                +   K    + G+ K  H    R   A++ A
Sbjct: 290 QVPFRVKENYLFVYLSPFKRGIPYRREYVNDHIKRCVERCGITKPFHTHLTRHTMASLVA 349

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
               +   L    G      +E Y       ++
Sbjct: 350 QH-CSWEVLKGRLGHADKSTSEIYRHLTSEEKM 381


>gi|70726809|ref|YP_253723.1| integrase [Staphylococcus haemolyticus JCSC1435]
 gi|68447533|dbj|BAE05117.1| integrase [Staphylococcus haemolyticus JCSC1435]
          Length = 341

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/267 (13%), Positives = 86/267 (32%), Gaps = 18/267 (6%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVESRK-- 127
            K     ++KS    ++   +  S+ S  + I     G    + ++  H +  +      
Sbjct: 60  FKTWCETFKKS----TVTPKTYKSYASAIEHINNHPIGKKKLKDLSRYHYQDFINEFSKH 115

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV-----ERPKRKTEGIRPWTKEDMQQF 182
           H+  S  +    +R     AV +  +A NP   V     +  K +          ++ + 
Sbjct: 116 HSKESIRKLNGYIRTSLDDAVYEGLIAKNPTFKVSYRASKPNKSEDSKYINLKDYEILKQ 175

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTGT-IITVELPD 239
                + +   L    ++ +G R S +     +++    +   I   KT +    V +  
Sbjct: 176 HLMTKDNASS-LVLFIMICTGCRISGALNLKREYINQVKSEIYIDEHKTDSSPRYVSISQ 234

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISA 298
             M  +  +              ++     +   K      G+ + ++H +R    +   
Sbjct: 235 KDMNHIIKSIDQLPRTIDGTVFGELTNNAVNKRLKVYCNNLGIKEITSHALRHTHCSYLL 294

Query: 299 DAGATAHELMATYGWKTVD-QAETYTK 324
             G + + +    G K +    E Y+ 
Sbjct: 295 AKGISIYYISKRLGHKNISVTTEVYSH 321


>gi|320449745|ref|YP_004201841.1| transposase [Thermus scotoductus SA-01]
 gi|320149914|gb|ADW21292.1| transposase [Thermus scotoductus SA-01]
          Length = 391

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 47/315 (14%), Positives = 100/315 (31%), Gaps = 47/315 (14%)

Query: 49  SALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII----- 103
            AL      +           T +    EY K      L  N   S     D++      
Sbjct: 49  RALADMVAAQAKGLLTDPSRLTTRDFALEYLKRLEREGLRPN---SIRLALDELAHALPS 105

Query: 104 -------RKSGDFDYRKITTKHIRSGVES---RKHTPSSAIQFLTSMRVLFKWAVRQEYV 153
                     G    +++   H+R+ V+      + P +  + L  ++ LF+ A+R E V
Sbjct: 106 LKDPKAHDPLGRMRLQEVKPVHVRAAVDRVVEAGYAPRTVGRVLMRLKALFREALRLELV 165

Query: 154 AINPCLSVE-RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE--FLLYSGLRCSDSC 210
           A NP  +V+ R  +  +  R     ++ +            +A     +L +GLR  ++ 
Sbjct: 166 ARNPAEAVKVRLPKGEKAARALEPHEVARLLEAAEASRSKDMALLLRLMLETGLRRGEAL 225

Query: 211 RAGVQHLQNNIFSIKTQKTGTII------TVELPDGFMK-------------------LL 245
               + +      +   +    +      +        +                   L 
Sbjct: 226 ALQWRDIDLEAGELTVGRAWVKVAGRGAFSEPKTPTAKRKVPLPRGLLLRLKARREELLA 285

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATA 304
            +TP   +  F+    + ++   F+ + +  A +AG+ +   H +R   AT++   G   
Sbjct: 286 RLTPEEVDGLFLVGGVKPVDPDAFNHYLRRLAERAGLGRVRVHDLRHTWATLALSRGVPL 345

Query: 305 HELMATYGWKTVDQA 319
             +    G  +    
Sbjct: 346 EVVSERLGHASPTIT 360


>gi|12831416|gb|AAK02074.1| site-specific recombinase IntIA [Vibrio metschnikovii]
          Length = 320

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 45/306 (14%), Positives = 98/306 (32%), Gaps = 58/306 (18%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
           + EY +  ++ +    +  S+  +  Q +          + ++ +   +         A 
Sbjct: 9   VKEYMQVRYYAN---KTIESYIHWITQYVVFHNKTHPNLLGSRDVEQFLTYLAVEKKVAT 65

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPK--RKTEGIRPWTKEDMQQFKSFWSEGSQP 192
           +  +       +   +E +     L ++  K   + +     T+E++++F +      + 
Sbjct: 66  KTQSLAFEALSFLY-REIIKEPLTLEMKFQKSQLERKLPIVMTREEIKRFFNHVDP--KY 122

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLAMTPI 250
           +L  + L  SGLR  +  R  VQ +  +  +++    K G   TV L      L+     
Sbjct: 123 QLHIKLLYGSGLRLMECVRLRVQDIDFDYGALRIWQGKGGKNRTVTLAKELHPLIKEQIS 182

Query: 251 GKETFF-----------------INN-----------------------------DKQKM 264
             + ++                 +N+                              +  +
Sbjct: 183 LAKRYYDKDMEAKGYGGVWLPNALNSKYPTAPFEFHWHYLFPSNALSVDQESNLLRRHHI 242

Query: 265 NATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           N T      K    +A + KS   H +R   AT   ++GA    +    G   V   + Y
Sbjct: 243 NETSLQRTVKRAVKEAEIKKSVSCHTLRHSFATHLLESGADIRTVQEQLGHADVSTTQIY 302

Query: 323 TKGADR 328
           T   DR
Sbjct: 303 THVLDR 308


>gi|298208931|ref|YP_003717110.1| putative transposase [Croceibacter atlanticus HTCC2559]
 gi|83848858|gb|EAP86727.1| putative transposase [Croceibacter atlanticus HTCC2559]
          Length = 416

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 52/285 (18%), Positives = 99/285 (34%), Gaps = 34/285 (11%)

Query: 70  TLKWL--ISEYRKSAHWGSLAVNSRISFE---SYFDQIIR---KSGDFDYRKI------T 115
           T K L  I  Y +      L   +  +++    Y  + ++   K+ D   + I       
Sbjct: 106 TFKKLSDILTYHEDKMRTILKPGTLKNYKTTSKYLKKFLKTKMKTDDVFLKHINYSFITE 165

Query: 116 TKHIRSGVESRKHTPSSAI----QFLTSMRVLFKWAVRQEYVAINPCLS--VERPKRKTE 169
            +H     +S+ H P+ +     + L  ++ L   A + E+VA  P     ++  K + E
Sbjct: 166 FEHFLRTFKSKTHRPTPSNNGVMKHLERLKKLMNLAQKLEWVAKEPFAKFSLKFTKVERE 225

Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----IFSI 224
            +     +++ +F S  +  +Q R  F F  Y+GL   D       H+            
Sbjct: 226 FLDEVEVQELIKFTSHRTALTQTRDVFIFACYTGLSWIDVKNLSQDHIVRGIDGSNWIYT 285

Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIG--KETFFINNDKQKMNATQFSIWFKAKATKAGV 282
             +KT T + + L     KLL+            +     +          K  A + G+
Sbjct: 286 AREKTDTPVKIPLLPIPEKLLSRYAEKMMDSELLLPVYSNQKTNKYL----KEIAIELGI 341

Query: 283 NK--SAHGVRKFSAT-ISADAGATAHELMATYGWKTVDQAETYTK 324
            K  + H  R   AT ++   G     +    G   +   + Y +
Sbjct: 342 RKKLTFHVARHTFATTVTLSNGVPIETVSKLLGHTKLSTTQIYAR 386


>gi|67924958|ref|ZP_00518346.1| Phage integrase [Crocosphaera watsonii WH 8501]
 gi|67853195|gb|EAM48566.1| Phage integrase [Crocosphaera watsonii WH 8501]
          Length = 316

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 46/277 (16%), Positives = 98/277 (35%), Gaps = 33/277 (11%)

Query: 86  SLAVNSRISFESYFDQIIRKSGD-------FDYRKITTKHIRSGVESRKHT--PSSAIQF 136
           SL+ +S+ +     + I R   +        D+ K+   H  +   + K    P++A + 
Sbjct: 30  SLSESSQSTMLVSLNAIARLVTNGQCDAMTLDWAKLRYPHTAAIRTALKKRYSPTTASKM 89

Query: 137 LTSMRVLFKWAVRQEYVA-INPCLSVERP----KRKTEGIRPWTKEDMQQFKSFWSE--- 188
           L  +R + K A+R + ++  +   +V+ P    +RK  G R  ++ ++        +   
Sbjct: 90  LCGLRRVLKEALRLDLMSASDYAKAVDFPSITGQRKLRG-RALSESEITALFQVCRDDPS 148

Query: 189 --GSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKL 244
             G +       L  +GLR ++     V        I  I+  K     TV LP   +++
Sbjct: 149 RQGIRDLALLAILRGAGLRRAELVALSVNDFTPDGGILQIRQGKGDKERTVYLPLSAVEI 208

Query: 245 ----LAMTPIGKETFFINNDK------QKMNATQFSIWFKAKATKAGVNK-SAHGVRKFS 293
               L +    +        K      + +++         +A +A +   S H  R+  
Sbjct: 209 VNRWLDLRSRTRGALLCPIRKGGAICFRHLHSDAVYKILAKRAGEAAIESFSPHDFRRTF 268

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
            +     G     +    G  + D    Y +  +  +
Sbjct: 269 CSDLLSNGVDLVTVQKLAGHSSPDVTAKYDRRGEEAK 305


>gi|329116924|ref|ZP_08245641.1| site-specific recombinase, phage integrase family [Streptococcus
           parauberis NCFD 2020]
 gi|326907329|gb|EGE54243.1| site-specific recombinase, phage integrase family [Streptococcus
           parauberis NCFD 2020]
          Length = 381

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 44/321 (13%), Positives = 105/321 (32%), Gaps = 41/321 (12%)

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122
           S + +  T   L+  + ++          R++       ++   G     KI+   I+S 
Sbjct: 62  SKKVQVKTYSQLVELWLENYKLTIKPQTYRVTTRLIDCHLLPYFGKMKVEKISNTDIQSF 121

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI---RPWTKEDM 179
           V        +     +    + ++ V    +  NP   V  PK++  G    +     D+
Sbjct: 122 VNGLSSKLVNFRTVNSINTRVLQYGVSLNLIPFNPARDVILPKKQKAGRDSVKFIDTNDL 181

Query: 180 QQFKSFWSEGSQPR-------LAFEFLLYSGLRCSDSCRAGVQHLQNN------------ 220
           +   +F  + S  R       + ++ LL +GLR  ++       +               
Sbjct: 182 KTLLNFMEKQSFRRYRYQVEYVFYKLLLATGLRIGEAVALEWSDIDLENATIDINKSFSQ 241

Query: 221 ---IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK------------MN 265
              + S    K GT + + +    + LL +  + +   F                   ++
Sbjct: 242 ELRLVSTTKTKAGTRL-ISIDKETVNLLKLYQVRQRQLFHEVGGGVPKVAFATPTREYLS 300

Query: 266 ATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYT 323
                    ++  + G+ + + H  R   A++  +AG +  EL    G   +    + Y+
Sbjct: 301 RLTLQNNLNSRCERLGIPRFTFHAFRHTHASLLLNAGISYKELQYRLGHSNIAMTLDVYS 360

Query: 324 K-GADRIRLGIKNSRRISSVV 343
               D+ +  +    +  + +
Sbjct: 361 HLSKDKEKEAVSYYEKAINSI 381


>gi|291538944|emb|CBL12055.1| Site-specific recombinase XerD [Roseburia intestinalis XB6B4]
          Length = 368

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 77/239 (32%), Gaps = 31/239 (12%)

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS--- 190
            + L+++R  + +  +   +  +P + V+ PK   + I     +++ +       G    
Sbjct: 131 KRKLSALRSFYHYYYKNGLIEDDPTVKVDMPKIHEKNIIRLDVDEVAKLLDEVESGENLT 190

Query: 191 ------------QPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVE 236
                       +       LL +G+R S+     ++ +   NN   I  +K G  + V 
Sbjct: 191 ARQQQYHEKTKIRDLAMMTLLLGTGIRVSECVGLDMEDVDFKNNGIKIH-RKGGAEVVVY 249

Query: 237 LPDGFMKLL--------AMTPIGKE--TFFINNDKQKMNATQFSIWFKAKATK-AGVNK- 284
             +   + L         +T         F++   ++++        K  +     +   
Sbjct: 250 FGEEVRRALMDYMVERQKITAADGSINALFLSLQNKRISVRSVENMVKKYSKLVTTLKHI 309

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSV 342
           + H +R    T         + +    G K V+   + Y    D  R       ++  +
Sbjct: 310 TPHKLRSTYGTSLYRETGDIYLVADVLGHKDVNTTRKHYAALEDERRRSAAKYVKLREI 368


>gi|298486709|ref|ZP_07004766.1| Prophage lambda integrase [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|298158792|gb|EFH99855.1| Prophage lambda integrase [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
          Length = 313

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/270 (15%), Positives = 82/270 (30%), Gaps = 38/270 (14%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLF 144
             LA  +   +  +F +  +        +I+ + +   ++    TP +A Q    +  +F
Sbjct: 33  RELAKGTLQLYAVHFRRFRKAFEGKAVDQISIRMVAVMLDEL--TPRTANQCRALLIDIF 90

Query: 145 KWAVRQEYVAINPCLS-VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203
             A  +     NP  S + R ++K       T E ++  +         R A +  L + 
Sbjct: 91  NHAAAKGLCPDNPAASTINRIEKKQRKRH--TVEGLKLIREKSPAWL--RNAIDLALITA 146

Query: 204 LRCSDSCRAGVQHLQNNIFSIKTQKTGTI-----ITVELPDGFMKLL-AMTPIGKETFFI 257
            R +D      + ++     +  QKT        I   +      ++          + +
Sbjct: 147 QRRTDILDMKFEDVREGFLYVIQQKTAKASDAAWIRFRVTPELQAVISRCRDNVASPYLV 206

Query: 258 NND-----------KQKMNA---TQFSIWFKAKATKAGVNKSA--------HGVRKFSAT 295
           +             K           +  FKA    AG             H VR  S  
Sbjct: 207 HRRPERLKQKQAQTKDHWTKIEERYLTRAFKAAREDAGCYADWSDEEMPGFHEVRALSLH 266

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKG 325
           +   AG    ++    G  + D  + Y K 
Sbjct: 267 LYKKAGKDGQKIA---GHASEDMTKNYQKD 293


>gi|255100620|ref|ZP_05329597.1| integrase/recombinase [Clostridium difficile QCD-63q42]
          Length = 346

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/308 (12%), Positives = 92/308 (29%), Gaps = 47/308 (15%)

Query: 82  AHWGSLAVNSRISFESYFDQIIR--------KSGDFDYRKITTKHIRSGVE----SRKHT 129
                 + N+  S+    + +             +  +  I    +   ++     R  +
Sbjct: 20  PDEQKCSPNTIRSYRKSLELLFDFIKTKRNISLSEITFEMIDRNAVSEFLDYLETERNCS 79

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP---WTKEDMQQFKS-- 184
            S+    L  +R  +K+A +++   I+    +++ K+  E        +++ +       
Sbjct: 80  ISTRNHRLHCIRAFYKYAAQEDITVISHLEEIQKVKKAKEPETIVEHMSEDAVNAILKQP 139

Query: 185 --FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI---FSIKTQKTGTIITVELPD 239
             F  +G +      FL  +G R  +     +  +Q       +I   K     ++ L D
Sbjct: 140 DTFTEKGKRDAFLLLFLYKTGARVQELVDIRLCDIQLGRHPKVTIH-GKGAKTRSIPLRD 198

Query: 240 GFMKLLA----------MTPIGKETFFINND--KQKMNAT-------QFSIWFKAKATKA 280
             ++ L                +  F++     K++M          ++    +    + 
Sbjct: 199 DVVQHLKQYLALFHPEEHLFSEQHLFYVTRSRMKKRMTEDNVRQLVRKYGKQAREICKEV 258

Query: 281 GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
             N   H  R   A I    G     +    G   ++    Y      ++      + + 
Sbjct: 259 PENVHPHLFRHSWAMILYQNGVDLTLISQWLGHSNLETTLIYAHADTELK-----RKALE 313

Query: 341 SVVDSDDP 348
             V  D P
Sbjct: 314 QAVPDDSP 321


>gi|225018072|ref|ZP_03707264.1| hypothetical protein CLOSTMETH_02009 [Clostridium methylpentosum
           DSM 5476]
 gi|224949069|gb|EEG30278.1| hypothetical protein CLOSTMETH_02009 [Clostridium methylpentosum
           DSM 5476]
          Length = 462

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 45/277 (16%), Positives = 85/277 (30%), Gaps = 44/277 (15%)

Query: 100 DQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL 159
            +I            T      G+ ++     +       +  +   AV+ + +  NPC 
Sbjct: 182 RRICEAFHIKLQELFTPVDADRGLAAK-----TINSHHRLLSSMLNTAVQWQIIFSNPCD 236

Query: 160 SVERPKRKTEGIRPWTKEDMQQFKSFWS-EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218
            V+ PK + +  R   ++   Q  +    E  Q +     L+Y+G+R  + C        
Sbjct: 237 RVKPPKLERKEARYLDEKQTAQLITCLQREPEQYQTMVLLLIYTGMRRGELCGLEWPDFD 296

Query: 219 ----------------NNIFSIKTQKT-GTIITVELPDGFMKLLAMTP------------ 249
                           +      T KT  +   ++L D  +KLL                
Sbjct: 297 MEHKLLYIQRESLYLPDRGIFEDTTKTYSSTRVIKLSDEAVKLLIQHKFAQNAERAKLGD 356

Query: 250 --IGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHE 306
             +     F     + ++    + WF     K  +   S H +R  +AT+    G     
Sbjct: 357 AWVDTGKIFTTCTGKPIHPDTLTTWFHKFVQKNDLPPVSVHSLRHTNATLLIANGVNLTT 416

Query: 307 LMATYGWK-TVDQAETYT---KGADRIRLGIKNSRRI 339
           +    G   T    + Y    K AD   +  +  + I
Sbjct: 417 VAGRLGHADTGTTTKVYAHAIKTAD--EMAAETIQNI 451


>gi|311747169|ref|ZP_07720954.1| mobilizable transposon, int protein [Algoriphagus sp. PR1]
 gi|126578878|gb|EAZ83042.1| mobilizable transposon, int protein [Algoriphagus sp. PR1]
          Length = 387

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 47/274 (17%), Positives = 90/274 (32%), Gaps = 26/274 (9%)

Query: 90  NSRISFESYFDQIIR-KSGDFDYRKITTKHIRSGVE--------SRKHTP---SSAIQFL 137
           N++ S+ S  + I+    G+  +  +  K + +  +            TP   +SA  + 
Sbjct: 114 NTKHSWTSALNYIVTFTGGELKFADLNQKLLENFKDYLLTTKSFRSNKTPLAQNSASSYF 173

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE 197
             ++   K A + E +  +    +   K +       T  ++        +    + A  
Sbjct: 174 NKIKAGIKQAFQDEILLTDLNSKISPIKTEETRREYLTIAELNNLVKTPCKDEVLKRAAI 233

Query: 198 FLLYSGLRCSDSCRAGVQHLQ-----NNIFSIKTQKTGTIITVELPDGFMKLL----AMT 248
           F   +GLR SD  +     L+       I + K +KT +I    + D    L+       
Sbjct: 234 FSAMTGLRFSDIHKLQWNELEYIESQGYILNFKQKKTKSIEVHPISDQAYNLIGGGNKPQ 293

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHE 306
            I ++T      K            K     AG+ K  + H  R   AT+ A        
Sbjct: 294 QIQQDTLVFVGLKYSAYKNDI---LKGWIESAGITKKITFHCFRHTYATLLAYGNTNPGT 350

Query: 307 LMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
           +    G K +     Y    D+++    N   + 
Sbjct: 351 VQKMLGHKNIKTTMLYFHIVDQLKREASNVINLD 384


>gi|157164045|ref|YP_001467592.1| transport protein [Campylobacter concisus 13826]
 gi|112801157|gb|EAT98501.1| site-specific recombinase, phage integrase family [Campylobacter
           concisus 13826]
          Length = 353

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/184 (15%), Positives = 73/184 (39%), Gaps = 18/184 (9%)

Query: 176 KEDMQQFKSFWSEGS------QPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQ 227
           +E++++F     E        + +L  + ++++G+R S++     + +    ++F I+ +
Sbjct: 170 EEEVKKFLDAIEESDFKQNSNRNKLIIKVIIFTGIRVSEALNLKRKDITEDGDLFIIRIR 229

Query: 228 KTGTIITVELPDG------FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281
             G    + +            +       +   FIN    ++     S   +    KAG
Sbjct: 230 GKGNKYRIVMIKRHLIEAHLNAIAINYINKEGYLFINKKGTRLTQAYVSRIVEQILFKAG 289

Query: 282 VNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSR 337
           + K    AH +R   AT+          +    G  +++ +  YT   +D+++L  K + 
Sbjct: 290 IRKEKNGAHMLRHTFATMLYKKQKDLVLVQEALGHASLNTSRIYTHFDSDKLKLAAKVAE 349

Query: 338 RISS 341
            +++
Sbjct: 350 DLAN 353


>gi|157165114|ref|YP_001466903.1| hydrogenase expression/formation protein [Campylobacter concisus
           13826]
 gi|112800281|gb|EAT97625.1| site-specific recombinase, phage integrase family [Campylobacter
           concisus 13826]
          Length = 354

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/184 (15%), Positives = 73/184 (39%), Gaps = 18/184 (9%)

Query: 176 KEDMQQFKSFWSEGS------QPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQ 227
           +E++++F     E        + +L  + ++++G+R S++     + +    ++F I+ +
Sbjct: 170 EEEVKKFLDAIEESDFKQNSNRNKLIIKVIIFTGIRVSEALNLKRKDITEDGDLFIIRIR 229

Query: 228 KTGTIITVELPDG------FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281
             G    + +            +       +   FIN    ++     S   +    KAG
Sbjct: 230 GKGNKYRIVMIKRHLIEAHLNAIAINYINKEGYLFINKKGTRLTQAYVSRIVEQILFKAG 289

Query: 282 VNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSR 337
           + K    AH +R   AT+          +    G  +++ +  YT   +D+++L  K + 
Sbjct: 290 IRKEKNGAHMLRHTFATMLYKKQKDLVLVQEALGHASLNTSRIYTHFDSDKLKLAAKVAE 349

Query: 338 RISS 341
            +++
Sbjct: 350 DLAN 353


>gi|21222400|ref|NP_628179.1| integrase [Streptomyces coelicolor A3(2)]
 gi|15021279|emb|CAC44721.1| putative integrase [Streptomyces coelicolor A3(2)]
          Length = 380

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 50/313 (15%), Positives = 96/313 (30%), Gaps = 33/313 (10%)

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSG 122
           P +  TT++   + +  +     L   ++ S+ S  + +I    GD +   +    +   
Sbjct: 65  PAEGQTTVRDWAARWLAAVS-PQLKHKTQASYRSLINSLINPVLGDRELSSLRPITVTEW 123

Query: 123 VESRKHTPSSAIQFLTSMRVL---FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
           V + +    SA +   + RVL    + AV  + +   PC  V  P+         T  + 
Sbjct: 124 VGAMRTKGLSASRIRQAYRVLSQIMRSAVDNDMIPQTPCRGVRLPRMPQTEPHILTPLEA 183

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---------------NNIFSI 224
            +     ++     L    L Y+GLR  ++       +                N +   
Sbjct: 184 SRIVKGATKPHD--LLIALLAYAGLRVGEAFALRRVDVDVSGGFVLVDENLAEANGVLVF 241

Query: 225 KTQKTGTIITVELPDGFMK----LLAMTPIGKETFFINNDKQKMNA--TQFSIWFKAKAT 278
            T K+     + +     K     L   P G +         K          +F    +
Sbjct: 242 DTPKSHQKRLLRVGPSLAKRLGRHLETLPGGDDALLFTTPGGKPLRYNQWRKAYFDPAVS 301

Query: 279 KAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADRI--RLGIK 334
            AG+ + + H +R    T  AD            G          Y +       ++   
Sbjct: 302 AAGLTDVTPHDLRASHGTWVADRYG-VMTAAHRLGHSNASVTTRHYARPVAGRDDQVAEA 360

Query: 335 NSRRISSVVDSDD 347
               +S   D+DD
Sbjct: 361 ADSWLSGSEDNDD 373


>gi|150019810|ref|YP_001312064.1| phage integrase family protein [Clostridium beijerinckii NCIMB
           8052]
 gi|149906275|gb|ABR37108.1| phage integrase family protein [Clostridium beijerinckii NCIMB
           8052]
          Length = 312

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/292 (12%), Positives = 93/292 (31%), Gaps = 36/292 (12%)

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS-GDFDYRKITT 116
           +  I     K  T      E+  S    +L   +   +++    I +        R IT 
Sbjct: 2   KRKIIEVSTKGITFDRGYDEFIFSCRARNLRPATIQFYDNSMRSIYKFIDPKMPIRDITK 61

Query: 117 KHI-------RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
             +       ++ ++ +  T  +   +L +++ +  + +R  Y+       +   K    
Sbjct: 62  ATVDNFIIGCQTELDIKDITIHT---YLRALKAILYYFMRSGYMEKFH---IPLIKYDKP 115

Query: 170 GIRPWTKEDMQQFKSFWSEG------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNI 221
            I  ++ E+++      ++        +  +    L  +G+R S+     ++ +   NN+
Sbjct: 116 VIETYSDEEVKLLLKKPNKNKCNFIEFRNWVICNVLYATGIRSSNLINLQIKDIDLCNNL 175

Query: 222 FSIKTQKTGTIITVELPDGFMKLLA-----MTPIGKETFFINNDKQKMNATQFSIWFK-- 274
            S+KT K    + + +      +L           ++  F +    K++    +   +  
Sbjct: 176 ISMKTTKNRKPLVIPITKSLQPILREYLAIRKGNEEDYLFCSAYGDKISKVALNGSMRTY 235

Query: 275 ---AKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
               +  + G+    H  R   A            L        +D    Y 
Sbjct: 236 NNGRRVKRTGI----HRWRHTFAKQWILNHGDIIRLQKILNHSDLDMVRNYV 283


>gi|329889816|ref|ZP_08268159.1| phage integrase family site specific recombinase [Brevundimonas
           diminuta ATCC 11568]
 gi|328845117|gb|EGF94681.1| phage integrase family site specific recombinase [Brevundimonas
           diminuta ATCC 11568]
          Length = 207

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 66/190 (34%), Gaps = 10/190 (5%)

Query: 9   PFVTK-ERTRHGK--IIYYFRKGHGRRIRLPYPHE--STFIPAYMSALTGSTPKREYINS 63
           P V K  R R G+    +Y  +G G  + L          +         +  K + +  
Sbjct: 15  PGVHKLRRIRGGRHIEYWYAWRGAGAPLILSASGATREELVKDVERLAPAAIRKFDELTQ 74

Query: 64  PRKKPTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR-- 120
           P     TL  LI+ Y  +     +LA  ++     + D    + GD + R + ++  R  
Sbjct: 75  PATDRRTLYGLITRYLAALEENQNLAPRTKADRRKHLDIARAELGDMEIRALESRKARPF 134

Query: 121 --SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
             +  + R  TP +A   L  +  +  WA  +  +  NP     R  R       W  + 
Sbjct: 135 LLAWRDKRAATPKTADDLLGDLSSVLTWAKDRGEILQNPAAEFPRIYRVNRAEIIWQPQH 194

Query: 179 MQQFKSFWSE 188
           +Q   +    
Sbjct: 195 LQLILAHADP 204


>gi|282859347|ref|ZP_06268457.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
 gi|282587879|gb|EFB93074.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
          Length = 404

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 44/256 (17%), Positives = 87/256 (33%), Gaps = 28/256 (10%)

Query: 89  VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES-------RKHTPSSAIQFLTSMR 141
            ++R   ++ F +   K  D  + ++T + I    +        ++ T  +A   L ++ 
Sbjct: 133 HSTRTHLQN-FIKSRYKVSDLAFSQLTEQFIYDFQQYFMGICGFQESTFYNAATHLKTV- 190

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ-----QFKSFWSEGSQPRLAF 196
              + A R+    I     V+  K   +  +   +  +      QF     E    R  F
Sbjct: 191 --CRLAYREGLADILLFDKVKVSKGDKKLPKALDRCSLDKLMNIQFGELEEEMETARDLF 248

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251
            F  ++G    D       HL  +           QKTG +  ++L    ++++      
Sbjct: 249 VFACHTGAAYCDLMELSRLHLVRDDEGSLWLKFNRQKTGVLCRIKLLPEAIRIIEKYKSD 308

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS-ADAGATAHELM 308
           +    +     +M    +  + KA   +AG+    + H  R   AT+   + G     + 
Sbjct: 309 ERERLL----PQMKYATYQSYLKALRLRAGIAFPFTTHTARHTFATLITLEQGVPIETVS 364

Query: 309 ATYGWKTVDQAETYTK 324
              G   V   E Y K
Sbjct: 365 KMLGHSNVSMTERYAK 380


>gi|262164337|ref|ZP_06032075.1| integron integrase IntI4 [Vibrio mimicus VM223]
 gi|262026717|gb|EEY45384.1| integron integrase IntI4 [Vibrio mimicus VM223]
          Length = 320

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 41/294 (13%), Positives = 86/294 (29%), Gaps = 57/294 (19%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWA 147
           A  +  ++  +  + I          +  K +   +       + A +  +       + 
Sbjct: 19  AKKTIEAYLHWITRYIYFHNKKHPSLMGDKEVELFLTHLAVNGNVAAKTQSLALNSLSFL 78

Query: 148 VRQEYVAINP-CLSVE--RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGL 204
            ++  +   P  L +   R + + +     T++++++         + +L  + L  SGL
Sbjct: 79  YKE--ILKTPLSLEIRFQRSQLERKLPVVLTRDEIRRLLDVVDP--KYQLPAKLLYGSGL 134

Query: 205 RCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLAMTPIG----------- 251
           R  +  R  +Q +  +  +I+    K G   TV L       L                 
Sbjct: 135 RLMECIRLRIQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHLKEQIALAKRYYDKDLHQ 194

Query: 252 ---KETFFINN--------------------------------DKQKMNATQFSIWFKAK 276
                 +                                     +  MN T      +  
Sbjct: 195 KNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVMRRHHMNETVLQRTVRRS 254

Query: 277 ATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           A +AG+ K+   H +R   AT   + GA    +    G   V   + YT   +R
Sbjct: 255 AQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHVLNR 308


>gi|320006222|gb|ADW01252.1| phage integrase [Lactobacillus phage LF1]
          Length = 362

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 40/335 (11%), Positives = 101/335 (30%), Gaps = 35/335 (10%)

Query: 10  FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
           +V +      +I +Y      RR +      +  +    +    +   +  +     K  
Sbjct: 4   YVKRSGKWQARISWY-DTAGKRRFKNKGGFTTKSLAKKWAVENEANLAKGILT---DKEI 59

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK-- 127
           T    + ++  +     +A  +   +    +++ R       R++T    +  +      
Sbjct: 60  TFADYVDQWVTTYKEPKVAKITLDRYHYTANEVRRFFKLTPIRQVTRTMYQEFINDYGSC 119

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP--WTKEDMQQFKSF 185
           H P +  +  + +R   K A+  +Y+  +    VE    K+  I+     K ++ +    
Sbjct: 120 HAPPTVKKVNSYIRSAVKSAILDDYLIKDFTQGVELNSDKSRSIKVDYLNKAEIHRLIQH 179

Query: 186 WSEGSQPRL----AFEFLLYSGLRCSDSCRAGVQHLQNNIFS---------------IKT 226
              G   R          +Y+G+R ++        +                      K 
Sbjct: 180 AEAGLTRRYTSRHMIVTAIYTGMRLAEIQALTWSDID--WIKSTITINKSWDAHTRQFKP 237

Query: 227 QKT-GTIITVELPDGFMKLLA--MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
            KT  +   +++    + LL    T       F+        +   +   +      G+N
Sbjct: 238 TKTESSNRVIKVNRHLLALLRGLRTHSKSNMVFLTQFGTIPTSNAVNKTLRTLLADLGIN 297

Query: 284 KS---AHGVRKFSATISADAGATAHELMATYGWKT 315
           +     H +R     +   +G   + +    G  +
Sbjct: 298 RQNFHFHSLRHSHVALLLASGIDLYAISKRLGHSS 332


>gi|294340300|emb|CAZ88677.1| putative Phage integrase [Thiomonas sp. 3As]
          Length = 334

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 45/295 (15%), Positives = 89/295 (30%), Gaps = 42/295 (14%)

Query: 70  TLKWLISEYRKSA--HWGSLAVNSRISFESYF--------DQIIRKSGDFDYRKITTKHI 119
           T   L+ E+         +L+  +  S+   F        D++   +       ++ + +
Sbjct: 8   TFAGLVQEFFTDYMVQQRALSPRTVASYRDTFVLLLRFAEDKLRLPAHGMTMTDLSARFL 67

Query: 120 RSGVESRKHTP----SSAIQFLTSMRVLFKWAVRQ-----EYVAINPCLSVERPKRKTEG 170
              ++  +        S    L ++R   K+A R+       +     + ++R +R+  G
Sbjct: 68  ADFLDHLEAQRHNCVRSRNVRLAAVRAFLKFAARRDPANLGVIENALAVPMKRFERRMVG 127

Query: 171 IRPWTKEDMQQFKSFWS---EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN---IFSI 224
             P   E M       S    G + RL    +  +G R S+     V  +         +
Sbjct: 128 FVP--HEQMLAVIDVASDTWIGQRDRLMLTLMFNTGARVSEIIGVHVADVVLGPSNSIRL 185

Query: 225 KTQKTGTIITVEL----PDGFMKLLAMTP--IGKETFFINNDKQKMNATQFSIWFKAKAT 278
              K     ++ L           L + P    +       D + M     +   K    
Sbjct: 186 H-GKGRKQRSLPLWKSSARAVRDWLHLNPQLGQESPLLPTRDGRAMTRANVAQRLKLAVK 244

Query: 279 KAGVNK--------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
            A V          S H VR  +A     +G    E+    G ++      Y + 
Sbjct: 245 VASVKHAQLKTMSVSPHIVRHSTAMSLLQSGVDPCEIALWLGHESPSTTHMYVEA 299


>gi|254555199|ref|YP_003061616.1| prophage Lp3 protein 1, integrase [Lactobacillus plantarum JDM1]
 gi|254044126|gb|ACT60919.1| prophage Lp3 protein 1, integrase [Lactobacillus plantarum JDM1]
          Length = 384

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 47/275 (17%), Positives = 88/275 (32%), Gaps = 45/275 (16%)

Query: 100 DQIIRKSGDFDYRKITTKHIRSGVESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158
           + I+   G+   R IT    +  V    K    +  ++   +  +F++ ++  Y+  NP 
Sbjct: 99  NHILPLFGNKRLRTITVNQCQRAVNLWFKEVTYNYKRWYNYLVAVFEYGLKHGYITHNPA 158

Query: 159 LSVERP-KRKTEGIRPWTKEDMQQFKSFWS-----EGSQPRLAFEFLLYSGLRCSDSCRA 212
             +  P K  + G +P    D  Q K+F+      + ++    F  L ++G+R  +    
Sbjct: 159 RMITMPVKPDSWGDKPDNFWDRDQLKTFFKCIDQQKETEKYCLFRVLAFAGVRRGECLAL 218

Query: 213 GVQHLQ-----------------NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG---- 251
             Q +                          +      TV L +  +++L          
Sbjct: 219 TWQDIDFVHKNLRVNKTLTQGKRGKQIIQAPKTKKGRRTVSLDNTTVEILQRWHKQQREY 278

Query: 252 -----------KETFFINNDKQKMNATQFSIWFKAKATK--AGVNKSAHGVRKFSATISA 298
                       +  F N      +      W K   T      + + HG R   A+   
Sbjct: 279 YLFLGFNTLQPDQLVFANTKNGFKSLNTPGKWLKRIITDYHLTPSITVHGFRHSHASALF 338

Query: 299 DAGATAHELMATYGWKTVDQA----ETYTKGADRI 329
            AGAT  E+    G + V          TKG ++ 
Sbjct: 339 AAGATIKEVQTRLGHEDVATTLNVYTHVTKGQNQQ 373


>gi|241895633|ref|ZP_04782929.1| integrase [Weissella paramesenteroides ATCC 33313]
 gi|241871211|gb|EER74962.1| integrase [Weissella paramesenteroides ATCC 33313]
          Length = 358

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/285 (12%), Positives = 95/285 (33%), Gaps = 26/285 (9%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE--SRKH 128
           L     ++  +     ++  +++ + +    I     +     +     +  +   ++K+
Sbjct: 61  LSEYFHDWYTTYK-LDMSRATQMWYHTTELYIEEHMQNVTLGSLNRPTFQRFLNTLAKKY 119

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV--ERPKRKTEGIRPWTKEDMQQFKSF- 185
           +  +  +    M    K A+  + +  +P   +  +  + K+  ++   +  M+    + 
Sbjct: 120 SDETVNKVRNIMHQAIKSAIYDDIIFKDPIDGIYAKGKQGKSSDLKYLEEPQMKALVDYI 179

Query: 186 ----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-----------KTG 230
                +  +   +     L +G+R  ++     Q +   + SI              KT 
Sbjct: 180 QSIDLNVRTDSDMMILLALNTGVRYEEAAALTWQDMNQGVISINKAWEQVERAIKEPKTK 239

Query: 231 TIIT-VELPDGFMKLLAMTPI-GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286
           + +  + +P   ++         K T F+    + + +   +   K         K  + 
Sbjct: 240 SSVRKISVPATLIEQFHAWKRPEKATDFVFGMPRPITSAAVNKRLKVDLQAIKSPKIITF 299

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIR 330
           HG+R   A+     G     + A  G K+V      YT   D ++
Sbjct: 300 HGLRHTHASWLLSHGVDIQYVSARLGHKSVGMTLRVYTHMLDNLK 344


>gi|124028392|ref|YP_001013712.1| integrase [Hyperthermus butylicus DSM 5456]
 gi|123979086|gb|ABM81367.1| possible integrase [Hyperthermus butylicus DSM 5456]
          Length = 406

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 39/281 (13%), Positives = 86/281 (30%), Gaps = 49/281 (17%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-----KHTPSSAIQFLTS--- 139
           +  +  ++ +     +   GD    +I +  + + +  R     +   SS    L +   
Sbjct: 35  SPKTVKAYRAALRDFLDFIGDKHIFQIDSSDVSAWIYERLSKGVRRPRSSGNNLLDARSR 94

Query: 140 ----------MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
                     +R    W          P   V++P+     +   ++E++++  +   + 
Sbjct: 95  QATMHYYTLFLRGFLAWL---GLDVKVPV--VKKPRGAR--VEALSREEVEKLLAAARDP 147

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITV---ELPD----- 239
               L    L  +GLR  ++    +  +        ++  K G    V    L +     
Sbjct: 148 L-DLLIVALLFETGLRAQEAVELRLGDIDFQRREIRVRGAKYGEERIVLYGPLTEYAMQI 206

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATI 296
                  M P  K           ++ +      K  A +AG++      H +R   AT 
Sbjct: 207 WLQLHPDMKPDDKLL--------GISYSGLYKRLKTLAKRAGLDPRKVRPHVLRHTFATE 258

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADR--IRLGIKN 335
           +   G     +    G K +   + Y    +    RL  + 
Sbjct: 259 ALRRGLPLPAVQRLLGHKDIKVTQVYLHLVNEDIRRLYQQA 299


>gi|323344112|ref|ZP_08084338.1| tyrosine recombinase [Prevotella oralis ATCC 33269]
 gi|323094841|gb|EFZ37416.1| tyrosine recombinase [Prevotella oralis ATCC 33269]
          Length = 345

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 48/307 (15%), Positives = 102/307 (33%), Gaps = 45/307 (14%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD--------YRKITTKHIRSG 122
           LK     Y        ++ ++  S+ + F  +     D           + ++ + I   
Sbjct: 14  LKDFFETYL--PKERGVSSHTIRSYSATFQSLYAFFKDNKGIRANKLFVKDLSRRSINDY 71

Query: 123 V----ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL-----SVERPKRKTEGIRP 173
           +      + +   +    L S++    +A  +++   N        S++  K     I  
Sbjct: 72  LNWLEMKKGNKVPARNSRLASVKAFCHYAQYKDF--KNIARWQEILSIKSKKSDMPCISF 129

Query: 174 WTKEDMQQFKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS--IKTQ 227
            T+E M+   S       +G +      FL  +G R ++       +L        + + 
Sbjct: 130 LTQEGMKTLLSEVPTDTIQGRRHLAILAFLYDTGARANELISFSAHNLNLTKPYHVVLSG 189

Query: 228 KTGTIITVELPDGFMKLLAM-------TP--IGKETFFINNDKQKMNATQFSIWFKAKAT 278
           K      V + +  + +L          P  I K+  F+N   +++ +   +      A 
Sbjct: 190 KGRKKRIVPIHEKLVLILKAYMKDTNIEPDNISKQPLFVNIHGRRLTSAGLTHIIMMYAD 249

Query: 279 K------AGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRI 329
           K      A +    S H  R   AT    AG     +    G  +V   ETY +  +++ 
Sbjct: 250 KVREKHPALMPERLSPHSFRHSKATHLLQAGMNIIYIRDFLGHSSVKTTETYVRMDSEQK 309

Query: 330 RLGIKNS 336
           R  ++ +
Sbjct: 310 RKALEAA 316


>gi|293604558|ref|ZP_06686962.1| integrase family protein [Achromobacter piechaudii ATCC 43553]
 gi|292817036|gb|EFF76113.1| integrase family protein [Achromobacter piechaudii ATCC 43553]
          Length = 331

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 60/340 (17%), Positives = 111/340 (32%), Gaps = 34/340 (10%)

Query: 11  VTKERTRHGKIIYYFRKGHGRRIR----LPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
           + +++ R   +  + R   G R+R    LP         AY       + +   + S  +
Sbjct: 3   IYRDKARGCLVFEFDRLIEGNRVRARKALPKSWSKAQADAYDR---QESARLYALASGVE 59

Query: 67  KPT-TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF-DYRKITTKHIRSGVE 124
           +P   ++  ++ Y K      L     I  E        K        ++   ++     
Sbjct: 60  RPQFLIEDAVAIYLKE-RVPDLKSGDNIQRELGMMMWAYKGKPMGALAEVCRAYVEKAFN 118

Query: 125 SRKHTPSSAIQFLTSMRVL---FKWA-VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
            +   P SA      +R L    +W   R      +P   V  P+ + E      + +M 
Sbjct: 119 EQTGEPLSAATKRNRIRYLTSACRWGWKRHGMHDRDPAERVIAPEVRNERRHYVNRAEML 178

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
                     + R A     YSG+R S+   A  Q   + +F ++  K G    V +   
Sbjct: 179 AIARACKC-KKSRAAIRIAFYSGMRLSEILEAVRQ---DGMFLLEDTKNGEPRHVPMHPK 234

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISAD 299
                 + P  K                 S  FK+ A   G+     H +R  +A+   +
Sbjct: 235 IRAASKVGPRNK--------------WSVSKEFKSAAVAVGMGHLRFHDLRHSAASAMIN 280

Query: 300 AGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSRR 338
           A    + + A  G K+    + Y   A + I+L +    +
Sbjct: 281 AKVNLYTVGAVLGHKSAASTQRYAHLATESIKLALGEIGK 320


>gi|224475956|ref|YP_002633562.1| phage integrase [Staphylococcus carnosus subsp. carnosus TM300]
 gi|222420563|emb|CAL27377.1| phage integrase [Staphylococcus carnosus subsp. carnosus TM300]
          Length = 349

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/309 (13%), Positives = 99/309 (32%), Gaps = 31/309 (10%)

Query: 48  MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKS 106
             A          IN       T  ++ + Y + +    L   ++    + +++    K 
Sbjct: 37  REAKYAEAAFLNDINEGYSDSNTFDYVFNHYLEHS---DLRPKTKKRKINEYNRHFKDKF 93

Query: 107 GDFDYRKITT---KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163
           G  +  KIT    +  R  +     + ++A    +  +V+  +A +   +  +P +S++ 
Sbjct: 94  GHINMNKITQNQCQEFRKYLMDNIPSTNTARTIWSGFKVVINYAKKYFGLRTDPTISIKP 153

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH------- 216
             R     +   +E+  +      E     L F+ + Y+GLR  ++              
Sbjct: 154 IPRIKTKPKYMLREEFDERVKEVEEQDYQEL-FKLMFYTGLRIGEAMALVWTDYNKYKKE 212

Query: 217 --------LQNNIFSIKTQKTGTIITVELP----DGFMKLLAMTPIGKETFFINNDK--Q 262
                   + N     + +   +   V LP    +   +         + F   +     
Sbjct: 213 ISIDKTMDISNRTIYPRPKTDSSEDIVPLPNFINEMLAERYQREKAANKYFDERSYFIFG 272

Query: 263 KMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ET 321
            +    +S   K    KA    + H +R   A+  A+ G     L +      + +   T
Sbjct: 273 GIAPKHYSHVHKKF-QKAFPQYNIHTLRHSYASYLANNGVDIFVLQSLMRHAQITETMGT 331

Query: 322 YTKGADRIR 330
           Y+    + +
Sbjct: 332 YSHLYTQKK 340


>gi|303245431|ref|ZP_07331715.1| integrase family protein [Desulfovibrio fructosovorans JJ]
 gi|302493280|gb|EFL53142.1| integrase family protein [Desulfovibrio fructosovorans JJ]
          Length = 394

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 49/296 (16%), Positives = 96/296 (32%), Gaps = 25/296 (8%)

Query: 49  SALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRI----SFESYFDQIIR 104
           SA   +  + +          T K L+       H+   A   +             I  
Sbjct: 79  SARIAAREQEQAEKQRNAAGATYKELVEA-----HYIPWAEREKKSAAADKTRLKLHIFP 133

Query: 105 KSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVA-INPCLSV 161
             G     ++T + + +  +     H  ++A+Q L  +R  F    R       NP   V
Sbjct: 134 VIGALTLDEVTPQVLEALRDKMVASHCRATALQVLALVRKTFNHLGRLGLHTLRNPVALV 193

Query: 162 ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQN 219
           + P+      R +T ++  +F +   +   P L  A    + +GLR  +  R     +  
Sbjct: 194 KLPRLDNACERFFTHDEFDRFLAAAGKLGNPDLHDACILAVDTGLRLGELNRLMPADVNL 253

Query: 220 NIFSIKTQ----KTGTIITV--ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF 273
            +  +  +    K G ++ +   +     K L     G+  F    D  +  + +F+   
Sbjct: 254 ELGFLTVREADGKPGGVVPLNSRVRAMLQKRLLTIAPGQHIFRTTRDGDREMSRRFTRLA 313

Query: 274 KAKATKAGVN-----KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +A     GV       + H +R    +  A A    + +      KT    + Y  
Sbjct: 314 RALGLNDGVTDRRQQLTFHSLRHTFGSWLALADVELYRIQKLMRHKTPAMVQRYAH 369


>gi|281491512|ref|YP_003353492.1| phage integrase [Lactococcus lactis subsp. lactis KF147]
 gi|281375230|gb|ADA64743.1| Phage protein, integrase [Lactococcus lactis subsp. lactis KF147]
          Length = 273

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 64/262 (24%), Positives = 99/262 (37%), Gaps = 36/262 (13%)

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128
           TTL+ L  +Y  S  + SL   + I F+ Y      KSG                  + +
Sbjct: 26  TTLRQL-DDYIVSNDF-SLDKETLIEFKQYLKDFQYKSG------------------KNY 65

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-PWTKEDMQQFKSFWS 187
              +  Q L  + V  KW   + YV+    LSV+  K +T+  R   T+ D ++     S
Sbjct: 66  KLKTINQKLIIVNVYLKWLETEGYVSG--RLSVKLLKSQTKEHRESITEADYKRLIKN-S 122

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE--LPDGFMKLL 245
              + RL    +  +G+R S+ C   V+ L   I  I+ +    IIT+   L       +
Sbjct: 123 TTEEMRLFILVIGNTGMRISEVCSFKVEDLNKKIIVIENKGKQRIITIPQFLKKQLKSYV 182

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGA 302
               I +  F+ N    ++N        K  A  A VNK     H +R + A      G 
Sbjct: 183 KKAGIEETIFYKNQRTYRVN-------LKKIAGIAKVNKEKVYPHSIRHYFAKSFLMNGG 235

Query: 303 TAHELMATYGWKTVDQAETYTK 324
            A  L    G + +     YTK
Sbjct: 236 DATVLQQLLGHEQIATTTIYTK 257


>gi|124006309|ref|ZP_01691144.1| phage integrase family protein [Microscilla marina ATCC 23134]
 gi|123988233|gb|EAY27891.1| phage integrase family protein [Microscilla marina ATCC 23134]
          Length = 400

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 47/304 (15%), Positives = 105/304 (34%), Gaps = 31/304 (10%)

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119
             ++P+  P     LI  +    HW +    S+ ++ +  +Q     GD +++ I  +++
Sbjct: 106 RPDNPKIAPAA-NELILAFIAHNHWIN--DRSKNTYINGLNQYFGFLGDNNWQMIDARNV 162

Query: 120 RSGVESRKH----TPSSAIQFLTSMRVLFKWAVRQ------EYVAINPCLSVERPKRKTE 169
            +  +  K     +  +   +L++++ L K+ ++       +  A+N    V+  K  T+
Sbjct: 163 AAFRDYLKDNKELSAFTINSYLSAIKELVKFCLKNYQMADGQIKALNEVKEVKTLKTNTK 222

Query: 170 GIR--PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227
                    + +++  +     ++    +  + Y GLR  +        +  ++  +K  
Sbjct: 223 KYYKNALPPDVLKRLIAGED--TRWAAYWGIMGYCGLRVKELQALKWADVDFDLDILKVL 280

Query: 228 KTG--TIITVELPDGFMKLLAM-TPIGKETFFINNDKQ----KMNATQFSIWFKAKATKA 280
             G  T   V+L      LL       KET   +  K       +       FKA     
Sbjct: 281 GKGQNTKEEVKLFGKAKVLLRAFLGEAKETVQGSLPKNFEICSYSYPTLYNHFKASLKAI 340

Query: 281 GVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
           GV+    S H +R        ++G     +       + D    Y       +L     +
Sbjct: 341 GVDETKYSLHSLRHTCGQQMLESGNPLEFVQRQLRHASTDTTAVYVN----KKLDEMFLK 396

Query: 338 RISS 341
            +  
Sbjct: 397 NVQE 400


>gi|2618951|gb|AAC48882.1| integrase [Phage 21]
          Length = 356

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 51/302 (16%), Positives = 96/302 (31%), Gaps = 39/302 (12%)

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKSAH----WGSLAVNSRISFESYFDQIIRKSGDF 109
           S  +R      R+   T+   + +Y            L  NS               G  
Sbjct: 45  SVNERLERMKGRRSDITVTEWLDKYISIQEDRLQHNELRPNSYRQKGKPIRLFREHCGMQ 104

Query: 110 DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL----FKWAVRQEYVA--INPCLSVER 163
             + IT   I   +++ K       +    +R++    FK A    +V    NP  + ++
Sbjct: 105 HLKDITALDIAEIIDAVKAEGH--NRMAQVVRMVLIDVFKEAQHAGHVPPGFNPAQATKQ 162

Query: 164 PKRKTEGIRPWTKEDMQQ-FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222
           P+ +    R  +  + Q  F+S        +      L +G R  D C      + +++ 
Sbjct: 163 PRNRVNRQR-LSLPEWQAIFESVSRRQPYLKCGMLLALVTGQRLGDICNLKFSDIWDDML 221

Query: 223 SIKTQKTGTIITVELP---DGFMKLLAMTPIGKETFFIN-------------NDKQKMNA 266
            I  +KTG+ + + L    D     L           ++             N   +++A
Sbjct: 222 HITQEKTGSKLAIPLNLKCDALNITLREVISQCRDAVVSKYLVHYRHTTSQANRGDQVSA 281

Query: 267 TQFSIWFKAKATKAGVNK------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
              +  FK    K G+        + H  R  S  +  + G    +L    G K+    +
Sbjct: 282 NTLTTAFKKAREKCGIKWEQGTAPTFHEQRSLSERLYREQGLDTQKL---LGHKSRKMTD 338

Query: 321 TY 322
            Y
Sbjct: 339 RY 340


>gi|304396875|ref|ZP_07378755.1| integrase family protein [Pantoea sp. aB]
 gi|304355671|gb|EFM20038.1| integrase family protein [Pantoea sp. aB]
          Length = 338

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/205 (17%), Positives = 61/205 (29%), Gaps = 18/205 (8%)

Query: 129 TPSSAIQFLTSMRVLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           TP +    L   R +F    R  E+ A NP  +V   K     +   T E+++   +   
Sbjct: 128 TPRTVNLELAYFRAMFNELRRLDEWTAANPLENVREFKISESEMAYLTIEEIRTLLAECE 187

Query: 188 EGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
                 L    +  L +G R S++       ++         K      V + +     L
Sbjct: 188 NSRSKDLTTIVKICLATGARWSEAEGLKGNQIRAGQIIYVKTKGKKNRAVPITEKLHSDL 247

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA----HGVRKFSATISADAG 301
             +   +  F                 F+    +AG+   A    H +R   A+     G
Sbjct: 248 PSSRKAELLF-----------KPCYSAFRKAMQRAGIETPAGQLTHVLRHTFASHFMMNG 296

Query: 302 ATAHELMATYGWKTVDQAETYTKGA 326
                L    G   +     Y+  A
Sbjct: 297 GNILVLQRILGHTDIKVTMRYSHFA 321


>gi|293410219|ref|ZP_06653795.1| conserved hypothetical protein [Escherichia coli B354]
 gi|291470687|gb|EFF13171.1| conserved hypothetical protein [Escherichia coli B354]
          Length = 333

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/311 (13%), Positives = 90/311 (28%), Gaps = 30/311 (9%)

Query: 30  GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAV 89
           G+RIR  +  +S  +      +           S  +    L  LI+ + +     +L+ 
Sbjct: 22  GKRIRKQFATKSEALSYERRLMNSRVGDEFQDGSGPR----LSELIARWFEMYG-KTLSS 76

Query: 90  NSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-----------KHTPSSAIQFLT 138
                 +   + I  + GD    +       +  E R           K + ++  +  +
Sbjct: 77  G--AERKVKLEAICSRLGDPFASQFDKNMFATYRERRLSGEWNPKGKKKLSEATVNREQS 134

Query: 139 SMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL--A 195
            +  +F    R   +   NP   + + + + + +     +++++      E     L   
Sbjct: 135 YLHAVFAELKRLGEWSGENPLTGIRKFREEEKELAFLYVDEIERLLISCDESRNKDLGVV 194

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF 255
               L +G R S++       +     +    K     TV +      +L   P  +   
Sbjct: 195 VRIGLATGARWSEAEGLKQSQVLPCRITFVKTKGKKNRTVPISPQLQAML---PKKRGAL 251

Query: 256 FINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKT 315
           F            F    K    +    +  H +R   A+     G     L    G   
Sbjct: 252 F------SPCYEAFDAAIKRAKIELPDGQLTHVLRHTFASHFMMRGGNILVLQKILGHSD 305

Query: 316 VDQAETYTKGA 326
           +     Y   A
Sbjct: 306 IKMTMRYAHFA 316


>gi|254449673|ref|ZP_05063110.1| phage integrase family protein, putative [Octadecabacter
           antarcticus 238]
 gi|198264079|gb|EDY88349.1| phage integrase family protein, putative [Octadecabacter
           antarcticus 238]
          Length = 283

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/257 (13%), Positives = 86/257 (33%), Gaps = 15/257 (5%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           TL+  +  Y         +  +++   +     ++        +I+             +
Sbjct: 17  TLEAAMEVYLARPKLR--SETNKVGMRAQLTLHLKDWMRLPLDEISKAMTVRRHHDMAGS 74

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
           PS+A   L S R ++  A R   +   P +++E  + K +G      +   +        
Sbjct: 75  PSAANHVLRSFRAIYNHARRTGDLPECPTMAIEWFEDKPDGRIIENLKHWWKTIDDLPNP 134

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT- 248
              R+ +E LL++GLR ++        +  +   +   K G    + +     ++LA   
Sbjct: 135 IH-RVFYELLLFTGLRKTEVFTLKWDQILEDRIHLPMTKNGRSFDLPISQLHHEILAPLR 193

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELM 308
           P+  +  F          ++     +       +  + H   +  AT++ +AG     + 
Sbjct: 194 PLSSDWVF------PSPKSETGHITRPVR----LKYNPHMHCRTFATVAMEAGVLEEIVG 243

Query: 309 ATYGWKTVDQA-ETYTK 324
                  +    + Y +
Sbjct: 244 RLLNHTPLSITGQRYVR 260


>gi|328884043|emb|CCA57282.1| integrase [Streptomyces venezuelae ATCC 10712]
          Length = 381

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 53/334 (15%), Positives = 97/334 (29%), Gaps = 35/334 (10%)

Query: 19  GKIIYYFRKG-HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISE 77
           G+    +R    G     P+  ++            +   R    +P            +
Sbjct: 20  GRWQARYRDPLSGETKSAPHTFDTKTDALVWLTTIEAEIIRGTYQAPDAGKVAFGPYADD 79

Query: 78  YRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTP---SSA 133
           + K      L   +R   ES     I    G      ITT  +R+   +   +     + 
Sbjct: 80  WLKH---RKLEDRTRERSESVIRLHIKPTFGAGTLAAITTPRVRAWRTALLESGVGEPTV 136

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
           ++    +R +   AV  E +  NPC      +         T  ++  +    +     R
Sbjct: 137 VKAYQLLRAILNTAVDDELIRRNPCRIKGADRYDVPERPVLTVAEV--YAVADAIRPHHR 194

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQ----------------NNIFSIKTQKTGTII-TVE 236
           +      ++ LR  +      + L                 +   + K  K+   +  V 
Sbjct: 195 VLVLLAAFTTLRFGELASLRRRDLDLTRSVVLVRRAQSELQDGTLADKAPKSAAGVRPVA 254

Query: 237 LPDGFMKLLA------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHG 288
            P   +  L                F       +  + F   + A    AGV+     H 
Sbjct: 255 FPAELVPELTHHLEHFAGAGQDGHLFQGPRGGLLRRSNFRDDWTAARAAAGVSGDVHFHD 314

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           +R    T+++ AGA+  ELM   G  T   A  Y
Sbjct: 315 LRHTGNTLASSAGASTRELMTRMGHSTTRAALIY 348


>gi|329957482|ref|ZP_08297957.1| site-specific recombinase, phage integrase family [Bacteroides
           clarus YIT 12056]
 gi|328522359|gb|EGF49468.1| site-specific recombinase, phage integrase family [Bacteroides
           clarus YIT 12056]
          Length = 393

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 49/283 (17%), Positives = 100/283 (35%), Gaps = 40/283 (14%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVESRKH 128
              IS +++     SL  +++ +  S    +     D  +  +T          ++ + +
Sbjct: 105 SSFISFFKQEVTNSSLKNSTKRNHLSTLMLLQEFKKDITFSDLTFEFVSSFEYFLQLKGY 164

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINP-CLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
             ++  + +  ++     A+ +EY+ I        + K           E++++ +    
Sbjct: 165 HTNTIAKHMKHLKRHVNIAINKEYIEIQKYAFRKYKIKTVENKHTHLVPEELEKLEKLNL 224

Query: 188 EGSQPRL-----AFEFLLYSGLRCSDSCRAGVQHLQN----NIFSIKTQKTGTIITVELP 238
            G   +L     AF F  Y+G+R SD      +++ +         K+ KTGT + + L 
Sbjct: 225 SGRYMKLQKSLDAFLFCCYAGMRYSDFTNLSSENIVDINQETWLIYKSVKTGTEVRLPL- 283

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK------------ATKAGVNK-- 284
                   +   GK    +N             +F+ +            A  AG++K  
Sbjct: 284 -------YLLFAGKGIIILNKY-----RDNLEGFFRLRDNSNVNKDLLTLAKLAGLSKNI 331

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           S H  R  +AT+    G     +    G K+V   + YT   D
Sbjct: 332 SFHTARHTNATLLIYNGVNITTVQKLLGHKSVKTTQVYTNIMD 374


>gi|297618160|ref|YP_003703319.1| integrase family protein [Syntrophothermus lipocalidus DSM 12680]
 gi|297145997|gb|ADI02754.1| integrase family protein [Syntrophothermus lipocalidus DSM 12680]
          Length = 352

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 47/342 (13%), Positives = 98/342 (28%), Gaps = 44/342 (12%)

Query: 27  KGHGRRIRLPYPHESTFIPAY----------MSALTGSTPKREYINSP---RKKPTTLKW 73
           +G G  +R+           Y            A       R  +  P   R    +L  
Sbjct: 5   RGKGWLVRIYLGRGEDGKKKYFTQMIYAPTEYMARQMEADIRRKLVKPAGYRVAVHSLGE 64

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPS 131
               +       +++  +   +ES+  ++    GD     +  + +   +  +     P 
Sbjct: 65  WFDVWLSEIK-DTVSYRTWKEYESHVRKLKPLVGDLLLYSVQAEALSKRLAGQFTHLRPK 123

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           +      +++   + AV ++    +  +  + P+   E  R   ++++++      E   
Sbjct: 124 TRKNLYATLKTAVREAVERKLAPSDALVGFKLPRVPHEIRRTLGRDELKRLIEAAKEYRH 183

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT---------------GTIITVE 236
             L    L  +G R  +        +     +I  +K+                   TVE
Sbjct: 184 G-LIIRLLCVTGARLGEILGLTWDCVDVERRTITIEKSVDTKHRVLKGDVKTPQARRTVE 242

Query: 237 LPDGFMKLLAMT-PIG----------KETFFINNDKQKMNATQFSIWFKAKATKAGVN-K 284
           L D    LL    P G          K   F  +D + +         +    KAG+   
Sbjct: 243 LDDETTALLKAVMPSGKVVPIHWQKEKSLVFQADDGRPVKYEAVRKTLRKALEKAGLPII 302

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
             H +R    T+    G     +    G         Y +  
Sbjct: 303 RIHDIRHSVVTLLLSEGVPPILVANLVGHNVGTTVNCYAQQV 344


>gi|291276943|ref|YP_003516715.1| DNA recombinase [Helicobacter mustelae 12198]
 gi|290964137|emb|CBG39982.1| DNA recombinase [Helicobacter mustelae 12198]
          Length = 354

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/188 (15%), Positives = 66/188 (35%), Gaps = 21/188 (11%)

Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFW------SEGSQPRLAFEFLLYSGLRCSDSCR 211
            L +       +      KE+++ F +            + R   + ++Y+G+R S++  
Sbjct: 151 TLKIPIKNASPKLPAYLKKEEIEGFLNALQNYPSTPMFCRDRAIIKLIIYTGMRISEALY 210

Query: 212 AGVQHLQNN----IFSIKTQKTGTIITVELPDGFMKLLA--------MTPIGKETFFINN 259
            G++ L+      + +++ +   T + +  P    + L         +  I     F N 
Sbjct: 211 LGLKDLRLEGDFYLLNVRGKGDKTRVLMVRPRVLQEDLKQWLTERAKIPTIEHHLLFCNK 270

Query: 260 DKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATISADAGATAHELMATYGWKTV 316
               ++         +    AG+ K    AH +R   AT+          +  T G  ++
Sbjct: 271 HGAPLSQAYIYRMVDSILQYAGIKKEKMGAHMLRHSFATLLYQKHKDLILVQETLGHASL 330

Query: 317 DQAETYTK 324
           D +  YT 
Sbjct: 331 DTSRIYTH 338


>gi|288927978|ref|ZP_06421825.1| integrase [Prevotella sp. oral taxon 317 str. F0108]
 gi|288330812|gb|EFC69396.1| integrase [Prevotella sp. oral taxon 317 str. F0108]
          Length = 431

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 52/284 (18%), Positives = 100/284 (35%), Gaps = 29/284 (10%)

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLT 138
           R    + +L+   R   E   D+ ++        +   +  R  ++ R    ++   +L 
Sbjct: 123 RTEGTYLNLSHADRNLHEFVKDKGVQDILIGAITEDLFEEYRFYLKKRGLKGTTINNYLC 182

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WSEGSQPRLA 195
            +  L   AV Q  +  NP  + +  K   + IR   K ++ +         E  Q RL 
Sbjct: 183 WLSRLMYRAVSQRIIRCNPFDNAKYEKEDRK-IRFLQKSEVAKLVEMKMNDRESEQARLM 241

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQ---NNIFSIK--TQKTGTIITVELPDGFMKLLAMTPI 250
           F F  ++G+  +D  R   +H+Q   +    I+   QKT     V L      ++     
Sbjct: 242 FVFACFTGMAIADMERLQYKHIQTSADGQRYIRKERQKTKVEFVVPLHPIAEAIINHCRK 301

Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---------------SAHGVRKFSAT 295
            +E    N + Q +     S+ F    +++ + K               S H  R    T
Sbjct: 302 EQE---NNEEWQTVKEKGDSLVFHRGCSRSVMGKNLCIVGKACGISQRLSYHMARHTFGT 358

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
           +   AG     +    G  ++   + Y +  DR     ++  R+
Sbjct: 359 MCLSAGIPIESIAKMMGHASISSTQIYAQVTDRK--ISEDMDRL 400


>gi|219669966|ref|YP_002460401.1| integrase family protein [Desulfitobacterium hafniense DCB-2]
 gi|219540226|gb|ACL21965.1| integrase family protein [Desulfitobacterium hafniense DCB-2]
          Length = 310

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/281 (15%), Positives = 99/281 (35%), Gaps = 34/281 (12%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT- 129
               I  Y++    G++   +   +     ++   S +    ++  +  ++ +     T 
Sbjct: 15  FSEWIEIYKR----GAVRPVTYQKYLMTLQRLTELSPNLKICELDKRKYQTLLNDYAKTH 70

Query: 130 -PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV--ERPKRKTEGIRPWTKEDMQQFKSFW 186
              + + F   ++     A+ +  + I+P   V  +      +  +  ++ ++Q      
Sbjct: 71  ERQTTMDFHHHLKSAILDAMDEGLLTIDPTRKVIIKGKPVSDKKNKFLSQFELQSLLKSL 130

Query: 187 SEGSQPR-LAFEFLLY-SGLRCSDSCRAGVQHLQNNIFSIKTQKT--------------- 229
           +   +P    F  L+  +GLR S++     +        +K  KT               
Sbjct: 131 NLTDKPNWDWFILLVAKTGLRFSEALALTPKDFDFECQKVKISKTWNYKNAEGGFGETKN 190

Query: 230 -GTIITVELPDGF---MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284
             +  T+++       ++ L+      E  F+    +  N+T  +   K    KAGV   
Sbjct: 191 LSSKRTIQIDIQLNTQIERLSKDLADDEPIFV--QGRVFNST-VNNRLKVLCKKAGVPII 247

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
           SAH +R   A++   AG +   +    G  ++    ETY  
Sbjct: 248 SAHCLRHTHASLLIFAGVSIASIAKRLGHSSISTTQETYLH 288


>gi|313652036|ref|YP_004046714.1| integrase family protein [Calditerrivibrio nitroreducens DSM 19672]
 gi|312940787|gb|ADR19978.1| integrase family protein [Calditerrivibrio nitroreducens DSM 19672]
          Length = 318

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 46/332 (13%), Positives = 101/332 (30%), Gaps = 62/332 (18%)

Query: 55  TPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS----GDFD 110
           TPK      P  +          +       + + N+  ++    D  I        D +
Sbjct: 2   TPKPAENPIPILQKHK-----ENFLNELKSQNYSKNTITAYSQEIDYFIEFFRGFQDDME 56

Query: 111 YRKITTKHIRSGVESR-------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE- 162
              I    I+  +  R       K   ++   +L ++   F +         +    ++ 
Sbjct: 57  IIDINRPFIQQSLIFREENSKTGKIATNTKKMYLKALYQFFVYL-------TDAMNGIKD 109

Query: 163 --------RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF---------EFLLYSGLR 205
                   + K +T       + ++++  ++ +     R++F         + LLY+G+R
Sbjct: 110 FTTLFSKIKIKAETRQKEYLNEVEIKRLLNYINVKKNKRMSFITCRNILLIKILLYTGMR 169

Query: 206 CSDSCRAGVQHL-----QNNIFSIKTQKTGTII------TVELPDGFMKLLAMTPI---G 251
            S+     +  +       NI  I+    G          +++ +     L         
Sbjct: 170 ASEVINIKLSDITTYEQDKNIIQIRIIGKGNKEGFCYIDHLKISEELEDTLLFRKRLNIT 229

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNKS-AHGVRKFSATISADAGATAHELMAT 310
            E  F     ++M   +  +       KAG+NK   H  R       A  G    ++   
Sbjct: 230 SEYLFTTKTGRQMTRQEAFLATANILKKAGINKKGLHLFRHTLGFHLAQKGVRIEDIQEI 289

Query: 311 YGWKTVDQAETYT--KGADRIRLGIKNSRRIS 340
                ++    Y   + AD+    I   ++I 
Sbjct: 290 LRHSNINTTRIYVQRREADK----INGIKKID 317


>gi|258625491|ref|ZP_05720383.1| site-specific recombinase IntI [Vibrio mimicus VM603]
 gi|258582197|gb|EEW07054.1| site-specific recombinase IntI [Vibrio mimicus VM603]
          Length = 320

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/294 (14%), Positives = 89/294 (30%), Gaps = 57/294 (19%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWA 147
           A  +  ++  +  + I          +  K +   +       + A +  +       + 
Sbjct: 19  AKKTIEAYLHWITRYIYFHNKKHPSLMGDKEVELFLTHLAVNGNVAAKTQSLALNSLSFL 78

Query: 148 VRQEYVAINP-CLSVE--RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGL 204
            ++  +   P  L +   R + + +     T++++++         + +L  + L  SGL
Sbjct: 79  YKE--ILKTPLSLEIRFQRSQLERKLPVVLTRDEIRRLLDVVDP--KYQLPAKLLYGSGL 134

Query: 205 RCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLAMTPIGKETFFINN--- 259
           R  +  R  VQ +  +  +I+    K G   TV L       L       + ++  +   
Sbjct: 135 RLMECIRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHLKEQIALAKRYYDRDLHQ 194

Query: 260 -------------------------------------------DKQKMNATQFSIWFKAK 276
                                                       +  MN T      +  
Sbjct: 195 KNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDAMRRHHMNETVLQRTVRRS 254

Query: 277 ATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           A +AG+ K+   H +R   AT   + GA    +    G   V   + YT   DR
Sbjct: 255 AQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHVLDR 308


>gi|331270786|ref|YP_004397223.1| integrase/recombinase [Clostridium botulinum BKT015925]
 gi|329127504|gb|AEB77447.1| integrase/recombinase [Clostridium botulinum BKT015925]
          Length = 272

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/264 (11%), Positives = 81/264 (30%), Gaps = 21/264 (7%)

Query: 86  SLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGV-ESRKHTPSSAIQFLTSMRV 142
             +  +  ++++   + ++       +   I  +  +  + E    +P +  + + ++R 
Sbjct: 16  DKSEKTIYTYKNDIKRFVKYFEKNKLEITTINMRKFKDYLLEVLLLSPKTVNRNIIAIRQ 75

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGI--RPWTKEDMQQFKSFWSEG--SQPRLAFEF 198
             ++              ++  K + +G      T ++  +      +    + +     
Sbjct: 76  FLEYLHINNI-------DIKMIKIQDQGFLDDILTNDEAIRMIKETEKARDLRAKAFICT 128

Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL---LAMTPIGKETF 255
           L Y+G+R S++     + +  +   I   K      V +P    K+        I     
Sbjct: 129 LYYTGMRVSEAISVLSKDINEDSIRI-LGKGRKYRDVLIPKKLKKIWKDYMTVRINNSDK 187

Query: 256 FINNDKQKMNATQFSIWFKAKATKAGVNKSA---HGVRKFSATISADAGATAHELMATYG 312
                +  ++        K     A + K     H  R        D G     +    G
Sbjct: 188 LFTGREGGISRFTALNIVKKYGGMAKIKKDKVYNHAFRHLYCINLVDRGIPIDAVKDLAG 247

Query: 313 WKTVDQAETYTKGADRIRLGIKNS 336
            + +     YT+ + +  L I N 
Sbjct: 248 HENISTTTIYTRKSKKQLLDIINQ 271


>gi|257413996|ref|ZP_04744923.2| site-specific recombinase, phage integrase family [Roseburia
           intestinalis L1-82]
 gi|257201563|gb|EEU99847.1| site-specific recombinase, phage integrase family [Roseburia
           intestinalis L1-82]
          Length = 368

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 77/239 (32%), Gaps = 31/239 (12%)

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS--- 190
            + L+++R  + +  +   +  +P + V+ PK   + I     +++ +       G    
Sbjct: 131 KRKLSALRSFYHYYYKNGLIEDDPTVKVDMPKIHEKNIIRLDVDEVAKLLDEVESGENLT 190

Query: 191 ------------QPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVE 236
                       +       LL +G+R S+     ++ +   NN   I  +K G  + V 
Sbjct: 191 ARQQQYHEKTKIRDLAMMTLLLGTGIRVSECVGLDMEDVDFKNNGIKIH-RKGGAEVVVY 249

Query: 237 LPDGFMKLL--------AMTPIGKE--TFFINNDKQKMNATQFSIWFKAKATK-AGVNK- 284
             +   + L         +T         F++   ++++        K  +     +   
Sbjct: 250 FGEEVRRALMDYMVERQKITAADGSINALFLSLQNKRISVRSVENMVKKYSKLVTTLKHI 309

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSV 342
           + H +R    T         + +    G K V+   + Y    D  R       ++  +
Sbjct: 310 TPHKLRSTYGTSLYRETGDIYLVADVLGHKDVNTTRKHYAALEDERRRSAAKYVKLREI 368


>gi|197344628|gb|ACH69660.1| phage integrase [uncultured bacterium]
          Length = 291

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/278 (13%), Positives = 82/278 (29%), Gaps = 23/278 (8%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
               T+  L           +LA  ++ ++      + R          + + +R     
Sbjct: 3   PSTATVSPLRQRMLDDMRMRNLAPKTQSAYIRAVRSLTRYLRRSPDTA-SPEDLRLFQLH 61

Query: 126 RKHTPSSA---IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
                +SA      LT ++  F   + +     +    +   +         ++E++ + 
Sbjct: 62  MVDAGTSAVSLNATLTGLKFFFDVTLER----SDAMAKMRPVRTPRRLPVVLSQEEVSRL 117

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPD-- 239
            +          A      +GLR  +  R  V  + +   +++  Q  G      +    
Sbjct: 118 IAAAPSIKYQ-TALSVAYGAGLRVGEIVRLRVADIDSQRMTLRVDQGKGRKDRYAILPPL 176

Query: 240 -------GFMKLLAMTPIGKETFFINNDK--QKMNATQFSIWFKAKATKAGVNKSA--HG 288
                   +    A   I  + +        Q M+A Q +      A  AG+ K    H 
Sbjct: 177 LLQRLRAWWKAAHAEGAIRADGWLFPGRDPVQPMSARQLNRVVHEAAAAAGIGKRVAMHT 236

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           +R   AT   +       +    G K ++    Y + A
Sbjct: 237 LRHSFATHLLEQKVDIRVIQVLLGHKKLETTSMYAQVA 274


>gi|166032157|ref|ZP_02234986.1| hypothetical protein DORFOR_01860 [Dorea formicigenerans ATCC
           27755]
 gi|166027880|gb|EDR46637.1| hypothetical protein DORFOR_01860 [Dorea formicigenerans ATCC
           27755]
          Length = 393

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 51/336 (15%), Positives = 106/336 (31%), Gaps = 43/336 (12%)

Query: 23  YYFRKGHG---------RRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
           YYFR   G         ++ R  +  +      Y   +  ST +     + +K+  T K 
Sbjct: 14  YYFRANLGYHPVTGKQIQKYRSGFSTKKEARAEYSKLILASTEEL----ADKKEDITFKK 69

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS-S 132
            I E     +   +  ++  +  S   +           +I   ++++         S +
Sbjct: 70  FIEEIYLPWYKTQVKESTYKNRYSTIQKHFAYFYKKKVSEIEAINVQTWQLKLAKQFSPN 129

Query: 133 AIQFLTSMRVL-FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS- 190
            ++ +  M  L F  A+       NP   +   K K   I  WT E+ Q+  S   +G  
Sbjct: 130 YVRIVQGMLCLAFDRAIILGLAKKNPARMIGNIKSKKVKIDFWTLEEFQKVISLLYKGDY 189

Query: 191 ---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-----------------G 230
                 ++F  L  +G+R  ++       +      +   KT                  
Sbjct: 190 YEHYLFISFWLLFMTGMRIGEAAALQWDDIDFETGMLIISKTLYYKTMNDYKFVEPKTQA 249

Query: 231 TIITVELP----DGFMKLLAMTPI--GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284
           +  T+ +         +  A+         F ++ +    + T      +  A  AGV++
Sbjct: 250 SNRTIYIDADTIKELQEWKAVQAKVLPNCGFVLSYNSTPTSKTTLPRALEKLANLAGVHR 309

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
              H +R   A++    G     +    G + +   
Sbjct: 310 IKIHALRHSHASLLISMGENPLLIKERLGHEKIQTT 345


>gi|291514108|emb|CBK63318.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
          Length = 409

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 46/273 (16%), Positives = 93/273 (34%), Gaps = 32/273 (11%)

Query: 85  GSLAVNSRISF---ESYF-DQIIRKSG--DFDYRKITTKHIRSGVESRKH----TPSSAI 134
              A+ +   +     Y  + I ++ G  D    ++  + +R+     K       ++ I
Sbjct: 129 TDYALITVRRYESCRRYLAELIRQRYGKEDLPLTEVNGELVRAFAFYLKTEKGCQQNTVI 188

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WSEGSQ 191
           +++  ++ +   A   +++A +P L + R   K       T +++Q            + 
Sbjct: 189 RYMKCLKKITNLACANDWMAKDPFLGI-RFHEKEVVREFLTMDELQTIYHKEFPLERLTL 247

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVELPDGFMKLLA 246
            R  F F  ++GL   D  +   +H+  +           QKT  +  + L D   ++L 
Sbjct: 248 VRDVFIFAAFTGLAFIDVQQLAPEHIVRDNNGNLWIRKPRQKTKNMCNIPLLDIPQEILR 307

Query: 247 MTP-----IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS-A 298
                     K         QKMN+     + K  A    + K  + H  R   AT    
Sbjct: 308 KYADHPTCRKKGVLLPVPCNQKMNS-----YLKEIADICMIRKNLTTHCARHSYATSVCL 362

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
             G +   +    G   +   + Y +  D   L
Sbjct: 363 VNGVSLENVAKMLGHSNIKMTQHYARVLDSSIL 395


>gi|1679807|emb|CAA96221.1| integrase [Haemophilus phage S2]
          Length = 337

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/261 (14%), Positives = 73/261 (27%), Gaps = 26/261 (9%)

Query: 83  HWGSLAVNSRIS---FESYFDQIIRKSGDFDYRKITTKHIRSGVESR--------KHTP- 130
            W  L   +        +    +    GD    +   +      + R        K+ P 
Sbjct: 68  EWFDLHGKTLSDGEARLAKLKNLCANLGDPPANEFNAEIFADYRKRRLDGEFSVNKNNPP 127

Query: 131 --SSAIQFLTSMRVLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
             ++  +    +R +F      +++ A NP   V   K +   +    + D+ +      
Sbjct: 128 KEATVNREHAYLRAVFNELKSLRKWTAENPLDGVRLFKERETELAFLYERDIYRLLVECD 187

Query: 188 EGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
               P   L     L +G R S++       +     +    K+    TV +      +L
Sbjct: 188 NSRNPDLGLIVRICLATGARWSEAETLTQSQVMPYKITFTNTKSKKNRTVPISKELFDML 247

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAH 305
              P  +   F +          F         +    +  H +R   A+     G    
Sbjct: 248 ---PKKRGRLFNDAY------ESFENAVLRAEIELPKGQLTHVLRHTFASHFMMNGGNIL 298

Query: 306 ELMATYGWKTVDQAETYTKGA 326
            L    G  T++    Y   A
Sbjct: 299 VLKEILGHSTIEMTMRYAHFA 319


>gi|66395739|ref|YP_240105.1| ORF010 [Staphylococcus phage 37]
 gi|62636162|gb|AAX91273.1| ORF010 [Staphylococcus phage 37]
          Length = 342

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/271 (14%), Positives = 98/271 (36%), Gaps = 19/271 (7%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRSGVESRKH 128
           TL   ++++  +    S++ ++   ++S    +   K  D    K+T   +++ + +   
Sbjct: 55  TLHQYLTQWVITYKRNSVSKSTYGGYKSNLKILKSFKIADIPIAKLTRLDVQNFLTAYTE 114

Query: 129 TPSSA--IQFLTSMRVLFKWAVRQEYVAINPCLSVER-----PKRKTEGIRPWTKEDMQQ 181
           T S     +  + ++     AV    +  NP   +       PK++T+     + E+ ++
Sbjct: 115 TRSQVTGRKMRSLLKTSLDDAVYDGLIKRNPVYRITFKAGHEPKKETDKFI--SIEEYKR 172

Query: 182 FKSFW-SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---ITVEL 237
            K+       +  L    ++ +G R S +      ++  +   I  QKT +    + V  
Sbjct: 173 LKNKLMQSNKRMDLILFIMICTGCRVSGAINMKSSYIGKD-LYIDEQKTDSSPRYVDVAK 231

Query: 238 PDG--FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSA 294
            D     K+++   +  + +   +        + +        +  + K + H +R    
Sbjct: 232 EDMQHIRKVISTWAVSMDGYIFKDRGILPRVKRVNARLGELCEELDIKKITTHALRHTHC 291

Query: 295 TISADAGATAHELMATYGWKTVDQA-ETYTK 324
           +     G +   +    G K +    E Y+ 
Sbjct: 292 SYLLSQGVSIQYISKRLGHKNMRITLEVYSH 322


>gi|239622583|ref|ZP_04665614.1| phage protein [Bifidobacterium longum subsp. infantis CCUG 52486]
 gi|239514580|gb|EEQ54447.1| phage protein [Bifidobacterium longum subsp. infantis CCUG 52486]
          Length = 279

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/277 (13%), Positives = 87/277 (31%), Gaps = 13/277 (4%)

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
            +  P   +  I+ + +S     L+ ++  +         R      Y  +T++ +    
Sbjct: 8   KKLPPAQWRDEITLWLESLTAAGLSQDTVNTRRCKIGHAARCLDKSPY-DVTSEDLVHWT 66

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
            S+     +   +  ++   F+W       A +P  ++ + ++     RP     +  + 
Sbjct: 67  ASQSWKAETRKGYRNTLVGFFRWLHATGRRADDPAAALPKVRKTRPHPRPCPDAHI--YA 124

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL---QNNIFSIKTQKTGTIITVELPDG 240
           +  +     RL       +GLR S+      + +         I   K      V + + 
Sbjct: 125 AMCAANDVERLMLRLGAEAGLRLSEIAAVHSRDVLEGDAGPSLIVRGKGDKQRIVPISED 184

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADA 300
             K +   P      F    +  +  +  S   +            H +R   AT   + 
Sbjct: 185 LAKRITAAP---GWLFPGRWRGHVEKSYVS---RHLTRLLPDGWGPHSLRHRYATRMYET 238

Query: 301 GATAHELMATYGWKTVDQAETYTKGAD-RIRLGIKNS 336
                 +    G  +V+  + Y    D R+R+G+   
Sbjct: 239 THDLLLVSKLLGHSSVETTQIYVAMPDSRLRVGLDAV 275


>gi|325677719|ref|ZP_08157370.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
 gi|324110585|gb|EGC04750.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
          Length = 362

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 50/261 (19%), Positives = 94/261 (36%), Gaps = 32/261 (12%)

Query: 86  SLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQ---FLTSMR 141
            +  ++  ++ + F+  I+ + GD     +T   I + +  +     SA       T  +
Sbjct: 79  RVKESTLANYRNKFEKHILPEFGDVPCADLTAGKINAFINQKLADGLSASYVRDIFTVFK 138

Query: 142 VLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG-SQPRLAFEFL 199
            + K+A  +  +       SV  PK   + I   +  + ++  S+     S         
Sbjct: 139 TMLKYAQDEYGFKLS--LKSVVLPKAARKQIEKISDTEQKKLVSYLKSNMSLTAFGILLS 196

Query: 200 LYSGLRCSDSCRAGVQHLQ--NNIFSIKT-----------QKTGTIIT----------VE 236
           L+ GLR  + C    + +   N I  I+            +KT  +I+          + 
Sbjct: 197 LFMGLRIGELCGLKWEDVDFRNKILHIRRTVQRISSANGNRKTKIVISAPKSATSFREIA 256

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSAT 295
           +PD  MK   M     + F I+   + +        +K     A V + + H +R   AT
Sbjct: 257 IPDMLMKYFEMFRDEADYFIISGTNKPVEPRTMQYRYKKILQSAEVEDHNYHKLRHTFAT 316

Query: 296 ISADAGATAHELMATYGWKTV 316
            SA+ G     L A  G  +V
Sbjct: 317 NSAEKGFNVKALSAVLGHSSV 337


>gi|308187152|ref|YP_003931283.1| Integrase [Pantoea vagans C9-1]
 gi|308057662|gb|ADO09834.1| Integrase [Pantoea vagans C9-1]
          Length = 291

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/254 (16%), Positives = 81/254 (31%), Gaps = 27/254 (10%)

Query: 93  ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----KHTPSSAIQFLTSMRVLFKWAV 148
            S +    +     G      ITT+ I   +ES     KH+ + A++ L  +  +F+ AV
Sbjct: 30  ASRKRIQTRTGFGFGRMPITDITTRDIAVFLESYVQCGKHSMAVALRSL--LMDVFREAV 87

Query: 149 RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD 208
            +  +  NP      P  +    R   ++ +   ++  S G   + A    L +G R  D
Sbjct: 88  VEGIIDRNPVEPTRTPSPEVRRERLSLEQFLAIRQAAESMGGWLQNAMNIGLLTGQRRED 147

Query: 209 SCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT-----------PIGKETFFI 257
             R     +++    +   KTG  + V L     +L               P     +  
Sbjct: 148 VTRMTFSAIRDGRLFVTQSKTGHKLAVPLDLELKELGMSLDRIVEECRKDNPSDSLIYSA 207

Query: 258 NNDKQKM----NATQFSIWFKAKATKAGVNK-----SAHGVRKFSATISADAGATAHELM 308
                +     +    +  F      +G+       + H +R   A+   +         
Sbjct: 208 VRRGGRKPGAVSPDALTGAFAEAREMSGIKFGPNPPTLHEIR-SLASRLYEVENREDFAQ 266

Query: 309 ATYGWKTVDQAETY 322
              G K +   + Y
Sbjct: 267 RLLGHKNLSMTKKY 280


>gi|254721127|ref|ZP_05182918.1| phage integrase [Bacillus anthracis str. A1055]
          Length = 381

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 56/367 (15%), Positives = 121/367 (32%), Gaps = 61/367 (16%)

Query: 17  RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK--------- 67
           R    ++ FR      +R   P+   +              +       KK         
Sbjct: 5   RKFGDVWEFR------VRFKDPYTQKYKEKSKRGFKTKKEAQLAAAEEEKKLLNGLEVEI 58

Query: 68  -PTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVES 125
            PT+LK  + ++ K     ++  N+ I  E   +  II    + + +++     +  + S
Sbjct: 59  TPTSLKHYLRDWLKLFKQDNVRKNTFILHERNIEKHIIPYFQNMNLKELKPMMYQKFINS 118

Query: 126 RKHTPSSAIQFLTSMRVLFK----WAVRQEYVAINPCLSV---ERPKRKTEGIRPWTKED 178
                 S  + +  +          AV  + +  NPC  V    +  ++ EG++    ED
Sbjct: 119 LTDQGYS-KRTVQIIHGTMNNAMKKAVSLKKIENNPCEEVVISNKNNKEREGLKYMRSED 177

Query: 179 MQQFKSFWSEGSQPRLAF-EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-------- 229
           +  F     + +     F + LL +G+R  ++     + +     +I   KT        
Sbjct: 178 IPLFLKTSYQYNYIYYIFFKALLNTGMRKGEAAALQWKDINLKEHTIIISKTLDFTAKTK 237

Query: 230 ----------GTIITVELPDGFMKLLAMTPI---------------GKETFFINNDKQKM 264
                      +  T+ +P   +  L                      +  F   D + +
Sbjct: 238 EELFGDTKTFTSKRTIMIPKSLVDELLAHKKWQNANKLVLQDAYEHELDLVFSRVDGKFL 297

Query: 265 NATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETY 322
             +     F     KA + +   H +R   A +  ++GA+   +    G K+++  +  Y
Sbjct: 298 PKSTLFNAFSRILKKANLPRLEIHSLRHTHAVLLLESGASMKYIQDRLGHKSIEITSNVY 357

Query: 323 TKGADRI 329
           +  +D+I
Sbjct: 358 SHISDKI 364


>gi|227461211|gb|ACP39550.1| putative integron integrase [uncultured microorganism]
          Length = 300

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/301 (12%), Positives = 79/301 (26%), Gaps = 52/301 (17%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS-S 132
           ++ + R        ++ +  ++  +  + I   G      +    + + + +     + S
Sbjct: 1   MLEQMRSVIRVKHYSLATEKNYLQWAKRFILFHGKRHPVDMGAPDVEAFLSALATERNVS 60

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
           A     +M  +        ++ +     V R K         T+++     +  S     
Sbjct: 61  ASTQNQAMHAILFLYRDVLHIDLPWLDGVTRAKVSKRLPSVLTQQETAALLAHVS--GTN 118

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLL----- 245
            L    L  +G+R  +  R  ++ +     I  I+  K     T  LP      L     
Sbjct: 119 GLIIRMLYGTGMRIKECLRLRIKDIDLARRIIVIREGKGNKDRTTMLPGSLADDLIQHID 178

Query: 246 ----------------------------------------AMTPIGKETFFINNDKQKMN 265
                                                   A      +    +  +    
Sbjct: 179 ERLRWHNLDLSTGHADVELPDAIARKYPRAASEWAWQYVFAAPTYSTDPRTGSVRRHHWC 238

Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
                   K  A +A ++K    H +R   AT   + G+    +    G   V     YT
Sbjct: 239 ERNIQRAVKVAAQQARIHKLVHPHTLRHSFATHLLETGSDIRTVQELLGHSDVSTTMIYT 298

Query: 324 K 324
            
Sbjct: 299 H 299


>gi|320530591|ref|ZP_08031643.1| site-specific recombinase, phage integrase family [Selenomonas
           artemidis F0399]
 gi|320137118|gb|EFW29048.1| site-specific recombinase, phage integrase family [Selenomonas
           artemidis F0399]
          Length = 387

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 61/387 (15%), Positives = 118/387 (30%), Gaps = 60/387 (15%)

Query: 12  TKERTRHGKIIYY-FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
            + R R GK   Y F      R +      ST   AY + +   T  +            
Sbjct: 4   IRVRKR-GKTYSYNFEVSVHPRRQKEKGGFSTRQEAYDAGVAAYTDWKTGNIGLISGRVK 62

Query: 71  LKWLISEYRKSAHWGSLAVNSRISF-ESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           +K  ++ + K+    ++  ++  S+      +II   G+   +++  + + + ++     
Sbjct: 63  IKDFLTAWLKNVAKPNVKKSTYRSYLNRVTKRIIPYLGEKILQELRPRDVDAWLKQLAKN 122

Query: 130 PSSAIQFLT----SMRVLFKWAV-RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
              A   L      +    K+A+   E +  NP   V  P+   + +   T    +QF +
Sbjct: 123 -GMARTSLEDSKMVLSTALKYAIYPSELIRANPVTGVPVPQSTPKKVIKRTVIAPEQFAA 181

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ------------KTGTI 232
             + G +    F+ + ++GLR S++       +      ++              KT T 
Sbjct: 182 IPTTG-RFYPVFKLMYHTGLRLSEALGLTWDDIDLTTGEVRVVRQRLREGYFETPKTATS 240

Query: 233 -----ITVELPDGFMKLLAMTPIGKETF----------------FINNDKQKMNATQFSI 271
                    L      L A     K                   F+   K+    T    
Sbjct: 241 TRTFYADAALLSFLRSLKAAQARDKLRLGEVYQLAYEDTHQGRAFVTLPKKLRPLTGLEQ 300

Query: 272 W--------------FKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVD 317
                                   +  +AH  R   AT   +AGA   ++ A  G K   
Sbjct: 301 RPLVCVYSDGTPYRHTSVACALKKMGLNAHSFRHTHATRLIEAGAKPVDVAARLGHKDAA 360

Query: 318 QAE-TYTKGADRIRLGIKNSRRISSVV 343
             +  YT   D   +  + +R    + 
Sbjct: 361 ITQNLYTH--DTAEMQKETARIFGELA 385


>gi|312865026|ref|ZP_07725254.1| site-specific recombinase, phage integrase family [Streptococcus
           downei F0415]
 gi|311099137|gb|EFQ57353.1| site-specific recombinase, phage integrase family [Streptococcus
           downei F0415]
          Length = 402

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 49/283 (17%), Positives = 96/283 (33%), Gaps = 40/283 (14%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR----SGVESRKHTPSSA 133
           Y KS     +  ++  +     + II++ G    + I+ + ++      +  +    S+A
Sbjct: 87  YYKS----EVTEHTYSTRHPSLNIIIKRFGKKKLKDISIRDVQNFRTWLLSEKGANYSNA 142

Query: 134 IQFLT--SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK-SFWSEGS 190
              LT  + R    +AV  +Y+  N  + ++   +    I  WTKED ++   +      
Sbjct: 143 YASLTFGTFRKSLDFAVDMQYLDSNVSMKIKAIPKGKTAIEYWTKEDFEKIISTICISDF 202

Query: 191 QPRLAFEFL---LYSGLRCSDSCRAGVQHLQ-----------------NNIFSIKTQKTG 230
              L F  L     +GLR ++        +                   +       KT 
Sbjct: 203 YEHLCFVMLWLYFCTGLRVNEGTALWWNDIDLSKKELRVSHMLIAKTKTDWVRQNRTKTD 262

Query: 231 TIIT-VELPDGFMKLLAMTPIG-----KETFFINNDKQKMNATQFSIWFKAKATKAGV-N 283
             +  + L D  +++L           K  F ++ D   M  +  S   K  A  A V  
Sbjct: 263 AGLRIISLDDDTVEILREWKKRQSKLVKTNFVLSYDGNPMIKSTISRIIKRYAKLADVPP 322

Query: 284 KSAHGVRKFSATISA-DAGATAHELMATYGWKTVDQA-ETYTK 324
             A G+R   A+    +  A+   +    G  + +   + Y  
Sbjct: 323 IQAKGLRHSHASYLINELNASVLIVSKRLGHSSPEITLKHYAH 365


>gi|256848881|ref|ZP_05554315.1| integrase [Lactobacillus crispatus MV-1A-US]
 gi|256714420|gb|EEU29407.1| integrase [Lactobacillus crispatus MV-1A-US]
          Length = 370

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 41/297 (13%), Positives = 100/297 (33%), Gaps = 38/297 (12%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKH 128
                 ++ ++      + N++  ++  +  + +  G     KIT +  +  + S  +KH
Sbjct: 61  FADYFKDWYETYKIPGKSNNTQNRYKHIYVLLQQNFGKTRISKITRRSYQHFMNSYGKKH 120

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV--ERPKRKTEGIRPWTKEDMQQFKSFW 186
              +  +   ++R   K A+ +  V IN    +     + ++  I     +++Q+ K   
Sbjct: 121 VKDTVYKTNGTIRTCVKDAMSEGLVKINFTERINLTWNEERSRKIEYLNFKEVQKLKKSL 180

Query: 187 SEGSQP----RLAFEFLLYSGLRCSDSCRAGVQHLQ------------------------ 218
            +   P    R     ++Y+G+R  +        +                         
Sbjct: 181 LKDITPSYISRYMLLTIIYTGMRPGEIKVLTWHDIDFKNHTISISKSWDYDNNKIINYDS 240

Query: 219 NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK-ETFFINNDKQKMNATQFSIWFKAKA 277
           ++I      K+ T I +++    + +L    +   E  FI  D    ++   +   + + 
Sbjct: 241 DDINKETKNKSSTRI-IKVDQNLLNILDQLKVNHHERLFIGKDGTIPSSNAVNKVLRKQL 299

Query: 278 TKAGVNKS---AHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADRIR 330
            K  + K     H +R     +    G   + +    G   +   A TY    D ++
Sbjct: 300 AKNKIKKDGFHFHSLRHTHVAMLLFKGVDLYSISKRLGHSNMSITANTYAYMLDELK 356


>gi|210619629|ref|ZP_03292053.1| hypothetical protein CLONEX_04294 [Clostridium nexile DSM 1787]
 gi|210148832|gb|EEA79841.1| hypothetical protein CLONEX_04294 [Clostridium nexile DSM 1787]
          Length = 345

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 41/295 (13%), Positives = 99/295 (33%), Gaps = 43/295 (14%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR--------KSGDFDYRKITTKHIRSG 122
           L++ ++ Y        L+ N+  S+++ F  +I+        K+ +  +  +    +   
Sbjct: 14  LEYYVNTYM--PEARGLSKNTINSYKTTFTLLIKYMYSVKNTKADEITFDCLDVNTLSDF 71

Query: 123 V----ESRKHTPSSAIQFLTSMRVLFKWAVRQEY----VAINPCLSVERPKRKTEGIRPW 174
           +      RK + ++  Q L ++    ++A   ++       +  L +   K   +    +
Sbjct: 72  MSWLENERKCSVTTRNQRLAALYSFSEYAQNYDFDAASTFRSAVLRIPSKKAPKKRRVGF 131

Query: 175 TKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----NNIFSIKT 226
           T ++++   +   +    G +  +   F+  +G R  + C   V+ +          I  
Sbjct: 132 TTDEVKILLALPDQKSETGLRDMVLLSFMYATGTRAQEVCDLTVKSVNFRSTGTTIDI-V 190

Query: 227 QKTGTIITVELPDGFMKLLAMTPIG-------KETFFINNDKQKMNATQFSIWFKAKATK 279
            K      + +PD    +L                 F +   + M  +     +K     
Sbjct: 191 GKGSKARRIRIPDPCASMLRKYIRHRRIETEPDRHIFSSQTHEHMTISCVEEIYKKYIKL 250

Query: 280 AGV---------NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           A           + S H +R  +     +AG     + A  G  +V   + YT+ 
Sbjct: 251 AKEKTPNLFKEEHYSPHSMRHTTGQHMLEAGVPIMVIKAFLGHASVQTTQIYTES 305


>gi|17426229|ref|NP_510895.1| similar to phage phi 11 integrase [Staphylococcus phage phiETA]
 gi|8918416|dbj|BAA97587.1| unnamed protein product [Staphylococcus phage phiETA]
          Length = 349

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 45/291 (15%), Positives = 95/291 (32%), Gaps = 39/291 (13%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFES-YFDQIIRKSGDFDYRKITT---KHIRSGVES 125
           T  ++   Y +++    L   ++   ++ Y      K G     KIT    +  R  +  
Sbjct: 59  TFDYVFHHYLENS---DLRPKTKRRKQNEYHKHFKAKFGHIKMNKITQNQCQEFRKYLIE 115

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
              + +SA    +  +V+  +A +   +  +P +S++   R     +   +E+ ++ +  
Sbjct: 116 NVASTNSARTIWSGFKVVINYAKKYFGLRTDPTISIKPIPRVKPKPKFMMREEFEK-RIK 174

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH---------------LQNNIFSIKTQKTG 230
             E    R  F  + Y+GLR  ++                      + N     + +   
Sbjct: 175 DIEEQDYRELFTLMFYTGLRIGEAMALVWTDYNKYKKEISINKTMDISNRTIYPRPKTDS 234

Query: 231 TIITVELPD----------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280
           +   V LP              K L      +  F        M    +S   K    KA
Sbjct: 235 SEDIVPLPKFINTMLTERHQREKELNKYFDERSYFIF----GGMAPKHYSHVQKKF-QKA 289

Query: 281 GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIR 330
             + + H +R   A+  A+ G     L +      + +   TY+    + +
Sbjct: 290 FPHYNIHALRHSYASYLANNGVDIFVLQSLMRHAQITETMGTYSHLYTQKK 340


>gi|295110002|emb|CBL23955.1| Site-specific recombinase XerD [Ruminococcus obeum A2-162]
          Length = 354

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 49/329 (14%), Positives = 112/329 (34%), Gaps = 40/329 (12%)

Query: 41  STFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD 100
             F   Y  A+  +T  +  I+         ++L+ E   +  + + A+     F     
Sbjct: 30  PAFCKDYFRAIDSTTTTKTRISYAYDIRIFFQFLLDE---NPVFKNYAMT---DFSVDVL 83

Query: 101 QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
             I+     +Y +      ++G ++  +      + ++++R  + +  ++E +  NP + 
Sbjct: 84  DQIKAIDLEEYMEYLKV-YQNGDKTETNGERGLKRKISALRSFYAYYYKREMIHSNPTVL 142

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSF--------------WSEGSQPR--LAFEFLLYSGL 204
           ++ PK   + I     +++     +              + E ++ R       LL +G+
Sbjct: 143 IDVPKIHDKSIIRLDTDEVALLLDYIEHCGDSLTGQKRVYYEKTKERDLAIVTLLLGTGI 202

Query: 205 RCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAM----------TPIGK 252
           R S+     ++ +   NN   + T+K G  + V   +   K L                +
Sbjct: 203 RVSECVGLDIEDVDFKNNGIKV-TRKGGNEMVVYFGEEVEKALKRYLEVRAGITPLAGHE 261

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMAT 310
              F +  +++M         K  + +    K  + H +R    T         + +   
Sbjct: 262 HALFYSAQRKRMGVQAVENMVKKYSRQITTTKKITPHKLRSTYGTALYQETGDIYLVADV 321

Query: 311 YGWKTVDQA-ETYTKGAD-RIRLGIKNSR 337
            G K V+   + Y    D R R      R
Sbjct: 322 LGHKDVNTTKKHYAALDDARRRQAATAVR 350


>gi|304322147|ref|YP_003855790.1| integrase/recombinase XerC [Parvularcula bermudensis HTCC2503]
 gi|303301049|gb|ADM10648.1| integrase/recombinase XerC, putative [Parvularcula bermudensis
           HTCC2503]
          Length = 315

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/305 (14%), Positives = 93/305 (30%), Gaps = 29/305 (9%)

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSL-AVNSRISFESYFDQIIR-----KSGDFDYRKI 114
           +  P         L + + +     +  +  +  ++    D+        + G+ D   I
Sbjct: 2   VAPPPSSAAAWPVLTAAFLRHLETQTRASPYTIRNYRQTIDRFSDFARRHRGGEVDLVDI 61

Query: 115 TTKHIRSGVESRKHT------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168
                                P +    L++++ LF++  R+      P  ++  PK   
Sbjct: 62  ARWRTADFRAFLADRRAEGIAPPTLRLDLSALKQLFRFIDRRTGSETTPLYALRTPKAPR 121

Query: 169 EGIRPWTKEDMQQFKSFWSEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223
              RP  +                   + R  F  L  +GLR S++     + L     S
Sbjct: 122 RLPRPIGQAPALALAEAAEHTQDWTVHRDRALFALLYGAGLRLSEALALDRRDLPPRGVS 181

Query: 224 IKTQKTGTII-TVELPDGFMKLL---------AMTPIGKETFFINNDKQKMNATQFSIWF 273
           ++    G  +  V L D     +         A+        F+    ++++        
Sbjct: 182 LRVLGKGAKMRDVPLLDVVRTRIDTYLDHRDKAIPGNTAPALFLGAKGRRLSPGVAQRAL 241

Query: 274 KAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           + +    G+  + + H +R   AT    AG     L    G  ++   + YT+      L
Sbjct: 242 RRERATLGLSDDATPHALRHAFATHLLAAGTDLRTLQTLLGHSSLKTTQGYTEIDAGRLL 301

Query: 332 GIKNS 336
            +  +
Sbjct: 302 AVHAA 306


>gi|329847560|ref|ZP_08262588.1| tyrosine recombinase xerD [Asticcacaulis biprosthecum C19]
 gi|328842623|gb|EGF92192.1| tyrosine recombinase xerD [Asticcacaulis biprosthecum C19]
          Length = 303

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 50/290 (17%), Positives = 99/290 (34%), Gaps = 37/290 (12%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF---DYRKITTKHIRSGVE--S 125
             WL  + R SAH  +       +F  Y D + +  G+    D  ++T+  +R  +    
Sbjct: 11  FGWLKGQRRCSAHTLA---AYGHAFRGYTDYLRQHWGEASLDDVARVTSADLRGWMAYLR 67

Query: 126 RKHTPSSAI---QFLTSMRVLFKWA---VRQEYVAINPCLSVERPKRKTEGIRPWTKED- 178
            K  P SA    Q L++++    +    + +  V +        P+ K    RP  ++  
Sbjct: 68  GKENPLSARSLAQHLSAVKSFHSYLDLHLDRGNVQVGLMRG---PRLKATLPRPLNEDQA 124

Query: 179 --------MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
                   M   +  W E S+    +  L   GLR S++    V           T K  
Sbjct: 125 IGLLAETRMDADRDDW-ENSRDEAVYMLLYGLGLRISEALSLTVADTPLGDSLRITGKGN 183

Query: 231 TIITVELPDGFMKLLAMTPIGK-------ETFFINNDKQKMNATQFSIWFKAKATKAGV- 282
            +  + + +   + +      +       +  F      +++        +   ++ G+ 
Sbjct: 184 KMRVLPVLEAVREAIERYKSQQPFILAATDRLFRAKRGGELSPRHVQATMQHLRSRLGLS 243

Query: 283 -NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
              + H +R   AT    +GA    +    G  ++   + YT   D  RL
Sbjct: 244 DRATPHALRHSFATHMLGSGADLRSIQELLGHASLSTTQKYT-QVDAERL 292


>gi|319641879|ref|ZP_07996554.1| integrase [Bacteroides sp. 3_1_40A]
 gi|317386498|gb|EFV67402.1| integrase [Bacteroides sp. 3_1_40A]
          Length = 382

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 85/234 (36%), Gaps = 19/234 (8%)

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
            +    +  SS    L  +  + + A++++Y+  +P   ++  +  T      T +++ +
Sbjct: 132 MLRDLGNKESSVSNRLRHLHQVIRKALQEQYIREDPFDFID-IETPTYERNALTSDELHK 190

Query: 182 ---FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-----QNNIFSIKTQKTGTII 233
              F+   S  +  RL F    ++GL  SD  +  +  +          S+   KT    
Sbjct: 191 LLSFRPHKSVDNHCRLIFLLGCFTGLAFSDLKKLRMDDVYTLSDGRRYISLCRTKTQNRC 250

Query: 234 TVELPDGFMKLLAMTPIGK-ETFFINNDKQKMNATQFSIWFKAKATKAGVN----KSAHG 288
            + L     ++L++    + E  F          + F+   +    KAG+      ++H 
Sbjct: 251 IIPLLPIAEEILSIVSGERTEGLFFREF---PTNSHFNRKIREIILKAGLPPHTEATSHT 307

Query: 289 VRKFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
            R   AT    + G     +    G + +   E Y K   + ++  +    + S
Sbjct: 308 ARHTFATTICLENGLPIEIVSKMLGHRFISTTELYAK-VSKSKIAREMQPLMGS 360


>gi|184200720|ref|YP_001854927.1| tyrosine recombinase XerC [Kocuria rhizophila DC2201]
 gi|183580950|dbj|BAG29421.1| tyrosine recombinase XerC [Kocuria rhizophila DC2201]
          Length = 378

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 45/285 (15%), Positives = 85/285 (29%), Gaps = 33/285 (11%)

Query: 85  GSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSG---VESRKHTPSSAIQFLT 138
            S + N+  S+ S    + R   + G      +    +R        R    SS  + + 
Sbjct: 90  RSRSENTVRSYTSDVADLSRWMLEHGIDGADLLDRDALRGWLAQRHQRGLARSSVSRGIA 149

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR----PWTKEDMQQF----------KS 184
           ++   F+WAV  + +  +P   +  P+               E +             +S
Sbjct: 150 AVHTFFRWAVDTQGLRHDPAAGLRGPRPARHLPDVVGATALAEMLDALGDVALGPHEEES 209

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMK 243
             +  ++     E L  +G R S+       H+      +  T K      V   +    
Sbjct: 210 DAALAARDWALLELLYATGARISELVGLDRAHVDRAQHVLTITGKGDKQRRVPYGERAGD 269

Query: 244 LLA---------MTPIGKETFFINNDKQKMNATQFSIWFKAKATK--AGVNKSAHGVRKF 292
            LA          T    +  F+     +++                    +  H +R  
Sbjct: 270 ALAVWEHRRPALATERAGDAVFVGARGGRIDPRVARRVVADALNDVPDTSARGPHSLRHS 329

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNS 336
           +AT   D GA    +    G  TV   + YT    +RI+     +
Sbjct: 330 AATHLLDGGADLRTVQELLGHATVATTQIYTHVSVERIKRAYSQA 374


>gi|87198280|ref|YP_495537.1| phage integrase [Novosphingobium aromaticivorans DSM 12444]
 gi|87133961|gb|ABD24703.1| phage integrase [Novosphingobium aromaticivorans DSM 12444]
          Length = 430

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 44/305 (14%), Positives = 89/305 (29%), Gaps = 40/305 (13%)

Query: 70  TLKWLISEYRKSAHWGS--------LAVNSRI-SFESYFDQIIRKSGDFDYRKITTKHIR 120
           T++ LIS Y K   +          +   ++  +     + ++   G     +++++ I 
Sbjct: 103 TVEALISLYEKEGCFVQRGIRIGVPMKPLTKKYTLSRLRNHVVPLLGKKRISEVSSQDIE 162

Query: 121 SG-------------------VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV 161
           S                        K    +A + +  +  +F +A+R+  V  NP    
Sbjct: 163 SLGRAITIGKTSKDEKVGVRNRVIVKGGEGAARKVIRDLSAVFSFAMRRGLVKANPVTLA 222

Query: 162 ERPKRKTEGIRPWTKEDM----QQFKSFWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQ 215
              K     +R  + +++    +        G  P+      L+  +G R  +       
Sbjct: 223 SVRKTDNVRVRHLSMDELKRLGEALDELEKAGVNPKAVNIARLWALTGCRRDEIAGLQWS 282

Query: 216 --HLQNNIFSIKTQKTGTIITV---ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS 270
               +     ++  KTG  +            KL           F     +        
Sbjct: 283 EVDFETGRLVLQDTKTGRSVRPLGGAAAILLAKLREGATADAVFVFPAERGEGFFQGTKR 342

Query: 271 IWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRI 329
           +W +A         + H +R    ++ A AG     + A  G         Y   A D  
Sbjct: 343 VWAQAILKAKLPGVTPHILRHTVGSLGASAGEGMLLVGAVLGHSNARSTLQYMHVASDPA 402

Query: 330 RLGIK 334
           RL   
Sbjct: 403 RLAAD 407


>gi|331082739|ref|ZP_08331862.1| hypothetical protein HMPREF0992_00786 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330400358|gb|EGG80000.1| hypothetical protein HMPREF0992_00786 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 368

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/315 (13%), Positives = 91/315 (28%), Gaps = 69/315 (21%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
           KWL+ +   SA    ++  +   + S   + II+  GD    ++T   IR  +    +  
Sbjct: 38  KWLLMQ---SAK---VSPATLKGYASNMKNYIIKPLGDMYMEEVTADDIRLALIPLSNKS 91

Query: 131 SSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQQFKSFWSE 188
            S    +  +     + A R + +  NPC  +  +  + T      T + ++        
Sbjct: 92  ESLHNTVNMLLKCIFYSAERSQLLEYNPCEGISAKGGKPTPKKDSLTDQQVEVLLETVK- 150

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHL-------------------QNNIFSIKTQKT 229
           G  P L     LY+GLR  ++       +                      + S   +  
Sbjct: 151 GLPPYLFTMIGLYAGLRREEALALQWDCVFLDAPTPYISVRRAWRSEHNRPVISTTLKTK 210

Query: 230 GTIITVELPDGFMKLLA--MTPIGKETFFINNDKQKMNATQFSIWFKAKATK-------- 279
                + +P   +  L         E    +++ Q ++ +QF   ++    +        
Sbjct: 211 AARRDIPIPKCLVNCLREAKAASKSEYVIADSEGQPLSYSQFKRVWQYIVVRSTKERTYY 270

Query: 280 -----------------------------AGVNKSAHGVRKFSATISADAGATAHELMAT 310
                                           + + H +R    T    AG     +   
Sbjct: 271 KYVNGQSIKYTVQPSLGGHQKNNPNIVYSLDFDVTPHLLRHTYITNLLYAGVDPKTVQYL 330

Query: 311 YGWKTVDQA-ETYTK 324
            G +      + Y +
Sbjct: 331 AGHENSKTTMDIYAR 345


>gi|260576688|ref|ZP_05844674.1| integrase family protein [Rhodobacter sp. SW2]
 gi|259021055|gb|EEW24365.1| integrase family protein [Rhodobacter sp. SW2]
          Length = 430

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/258 (14%), Positives = 83/258 (32%), Gaps = 15/258 (5%)

Query: 82  AHWGS--LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
            HWG   +   +        + I +  G     K    +    ++  K TP  A +    
Sbjct: 142 PHWGRKLVTEITPHDVAKLLNIIAK--GRARPSKEKPNNRARKLQGPKPTPIRANRVGEV 199

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA--FE 197
           +R +F  A+  ++ A NP    ++ + + E  R  +++++ +           R A    
Sbjct: 200 LRKMFTLAIGWDWRADNPASGFKK-RIENERERFLSQDEIGKLAEALDAAKDQRGAGIIR 258

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKT----QKTGTIITVELPDGFMKLLA----MTP 249
             + +G R  +  +A  +     + S        K   I  + +      ++     + P
Sbjct: 259 LCMLTGSRVGEVRQARFEQFNLELCSWSKPAASTKQRKIHRIPISAEVAAIVRQRGLVVP 318

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMA 309
            G    F  +   +        W   +      +   H +R   A++    GA+   +  
Sbjct: 319 KGNPWLFPGDTPGQPVKEIRRFWINIQKDAKLPDVRIHDLRHTFASLLVSGGASLEMIGK 378

Query: 310 TYGWKTVDQAETYTKGAD 327
             G   +   + Y    D
Sbjct: 379 LLGHSQMQTTQRYAHLMD 396


>gi|160915258|ref|ZP_02077471.1| hypothetical protein EUBDOL_01266 [Eubacterium dolichum DSM 3991]
 gi|158433057|gb|EDP11346.1| hypothetical protein EUBDOL_01266 [Eubacterium dolichum DSM 3991]
          Length = 357

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 53/278 (19%), Positives = 106/278 (38%), Gaps = 20/278 (7%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           T   +  E+        ++ N+       +    +K  +   + + T   ++ +     +
Sbjct: 85  TFNDVFEEWFDMLP-KDISENTVKGHLFAYQH-CKKIVNRKIKSLRTIDFQNVINDCSLS 142

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK-TEGIRPWTKEDMQQFKSFWSE 188
            SS I+  + M  + K+A   +Y+  N    +     K ++  +P+TKE++   +  W  
Sbjct: 143 DSSKIKIKSLMVSVCKYAEMNDYINKNYASFLPAINEKQSDLHQPFTKEEL---RILWEH 199

Query: 189 GSQPRLA-FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT------VELPDGF 241
              P +     ++Y+G R ++      ++ +N     KT K G          V +    
Sbjct: 200 KDMPYVDTILIMIYTGFRINELLEM--ENCKNIDIENKTMKGGFKTDAGKDRIVPIHSSI 257

Query: 242 MKLLAMTPIGKETFFINN--DKQKMNATQFSI-WFKAKATKAGVNKSAHGVRKFSATISA 298
           M L+       + +FI N  +  +M    +   +F     K  +    H  R   AT+  
Sbjct: 258 MPLVMNHYDPAQKYFIRNKRNGSRMKYQNYRNNYFDKIMIKLKMEHLPHDCRHTFATLLN 317

Query: 299 DAGATAHELMATYGWKTVDQAE-TYT-KGADRIRLGIK 334
           DA A +  +M   G  + D  E  YT K  + +R  I+
Sbjct: 318 DAEANSTSIMKLIGHSSFDITEKIYTHKDIEELRKAIE 355


>gi|269202472|ref|YP_003281741.1| integrase [Staphylococcus aureus subsp. aureus ED98]
 gi|262074762|gb|ACY10735.1| integrase [Staphylococcus aureus subsp. aureus ED98]
          Length = 349

 Score = 87.8 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 47/313 (15%), Positives = 99/313 (31%), Gaps = 39/313 (12%)

Query: 48  MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFES-YFDQIIRKS 106
             A +        +N       T  ++   Y +++    L   ++   ++ Y      K 
Sbjct: 37  REAKSAEAIFLNDVNEGYSDSKTFDYIFHHYLENS---DLRPKTKRRKQNEYHKHFKAKF 93

Query: 107 GDFDYRKITT---KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163
           G     KIT    +  R  +     + +SA    +  +V+  +A +   +  +P +S++ 
Sbjct: 94  GHIKMNKITQNQCQEFRKYLIENVASTNSARTIWSGFKVVINYAKKYFGLRTDPTISIKP 153

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH------- 216
             R     +   +E+ ++ +    E    R  F  + Y+GLR  ++              
Sbjct: 154 IPRVKPKPKFMMREEFEE-RIKDIEEQDYRELFTLMFYTGLRIGEAMALVWTDYNKYKKE 212

Query: 217 --------LQNNIFSIKTQKTGTIITVELPD----------GFMKLLAMTPIGKETFFIN 258
                   + N     + +   +   V LP              K L      +  F   
Sbjct: 213 ISINKTMDISNRTIYPRPKTDSSEDIVPLPKFINTMLTERHQREKELNKYFDERSYFIF- 271

Query: 259 NDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
                M    +S   K    KA  + + H +R   A+  A+ G     L +      + +
Sbjct: 272 ---GGMAPKHYSHVQKKF-QKAFPHYNIHALRHSYASYLANNGVDIFVLQSLMRHAQITE 327

Query: 319 A-ETYTKGADRIR 330
              TY+    + +
Sbjct: 328 TMGTYSHLYTQKK 340


>gi|227497442|ref|ZP_03927674.1| phage integrase [Actinomyces urogenitalis DSM 15434]
 gi|226833118|gb|EEH65501.1| phage integrase [Actinomyces urogenitalis DSM 15434]
          Length = 294

 Score = 87.8 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 44/286 (15%), Positives = 85/286 (29%), Gaps = 13/286 (4%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSGVESRKH 128
            +  I+ +         A  SR         + R   + +Y    +TT  +      R+ 
Sbjct: 2   WEEAITGFMAFERIQGRATTSRKKNREQLAHLARTIPNAEYGPWSVTTPTLLQWYTDREI 61

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
              +     T++R  + W V   ++  +P   +   +R      P   + + Q  +    
Sbjct: 62  ALETRHSLRTTLRAFYAWGVAAGHLTTSPADVIPPVRRPGPNPHPLPDDLLGQALAKADA 121

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHL---QNNIFSIKTQKTGTIITVELPDGFMKLL 245
             +  L       +GLR ++      + L             K      V L  G   LL
Sbjct: 122 --RQTLILRCAAEAGLRRAEIAAIHARDLLQTSGGTVLAVHGKGSKQRLVPLAPGLAALL 179

Query: 246 --AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGAT 303
             A           N     ++A + +   +          + H +R   AT + DA   
Sbjct: 180 TDATNADPHGYALPNGQGSHLSAERVADSVRHLIPS---PYTLHALRHRFATTAYDATRD 236

Query: 304 AHELMATYGWKTVDQAETYTK-GADRIRLGIKNSRRISSVVDSDDP 348
              +    G  +    + Y    AD++R  +    + S       P
Sbjct: 237 LFSVQRLLGHASPTTTQRYVATDADQLRAVVAAVAQRSEYAALPHP 282


>gi|149196782|ref|ZP_01873835.1| prophage DLP12 integrase [Lentisphaera araneosa HTCC2155]
 gi|149139892|gb|EDM28292.1| prophage DLP12 integrase [Lentisphaera araneosa HTCC2155]
          Length = 397

 Score = 87.8 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 45/291 (15%), Positives = 84/291 (28%), Gaps = 29/291 (9%)

Query: 55  TPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESY----FDQIIRKSGDFD 110
             K + + S ++ P    W I  Y KS         + + +  Y       + +   + +
Sbjct: 63  IAKAKGLVSDKRIPIKDGWSI--YNKSKKRLDSGDLTLVRYSQYWSKLVKFLEKHYSNLE 120

Query: 111 YRKITTKHIRSGVESR----KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
           Y       +             T +    FL   R           V INP       ++
Sbjct: 121 YVDEINAAMADEFLENLTVASGTYNKYNNFLK--RYFMTVGKECG-VHINPFDGFATKRQ 177

Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSI 224
           + +  R    E++   K+     S         +Y+G+R  D+       +    +I + 
Sbjct: 178 QKKSWRELNSEEIDLLKNLPK--SDDWALCNIGIYTGMRLKDAALLKWADIDLDRDILTF 235

Query: 225 KTQKTGTI---ITVELPDGFMKL-LAMTPIGKETFFIN-------NDKQKMNATQFSIWF 273
              KT      I + +     K+ L +   GK + ++        +  Q   +      F
Sbjct: 236 MPSKTAKQEKVIQLPILSELKKIFLWIKQKGKPSVYLLPQMAALYSRDQYSLSRYIQDLF 295

Query: 274 KAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
                  G     H  R    +  A  G     + A  G  +      YT 
Sbjct: 296 TDLKITDG-KVGFHSFRHTFVSECAKNGVPQSIVQAIVGHGSPAMTRHYTH 345


>gi|290959761|ref|YP_003490943.1| phage integrase [Streptomyces scabiei 87.22]
 gi|260649287|emb|CBG72402.1| putative phage integrase [Streptomyces scabiei 87.22]
          Length = 435

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 72/396 (18%), Positives = 111/396 (28%), Gaps = 66/396 (16%)

Query: 11  VTKERTRHG-KIIYYFRK--GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK 67
           V  +  RHG  + Y  R     G      +P     +     A T +   R     PR  
Sbjct: 35  VRVKSDRHGSGLRYRARYIGPDGTEKSKSFPDRQKRLAEQWLAQTEADMARGEYIDPRTA 94

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127
            TT +     +  S H G +                   G         +HIR+ + + +
Sbjct: 95  RTTFRQYAERWVNS-HTGEINSREAAERRLRLHAY-PHIGTRPLGSFKPEHIRAWIAALE 152

Query: 128 HTPSSAIQ---FLTSMRVLFKWAVRQEYVAINPCLS--VERPKRKTEGIRPWTKEDMQQF 182
            T  +       + ++      AV    ++ NPC +  V+ PK     + PWT   +  F
Sbjct: 153 DTVPAESHRRIIVGTVSAALSAAVDDGLLSKNPCRARTVQLPKPGKPRVDPWTSAHV--F 210

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ--------------- 227
               +   + R   +     GLR  +     V  L      +                  
Sbjct: 211 GVRAALAQRFRATVDPGAGCGLRQGEIFGLSVDELNYEGGWLTVGHQLKRIRGKYVFALP 270

Query: 228 KTGTIITVELPDGFMKLLAM---------------TPIG----KETFFINNDKQKMNATQ 268
           K G +  V LP      L                 TP G    K   F   +   +  + 
Sbjct: 271 KGGKVRDVPLPRAVAAALRAHSEEFAPVDVTLPWRTPDGPLVTKRLLFSGVEGNHVRVSN 330

Query: 269 F-SIWFKAKATKAGV--------------NKSAHGVRKFSATISADAGATAHELMATYGW 313
           F +  +K     AGV                  H +R F A++  DAG     L    G 
Sbjct: 331 FNAHHWKPALAGAGVIPKPERGERYASAPEDGMHALRHFYASVLLDAGENIRALSQYLGH 390

Query: 314 KTVD-QAETYTK----GADRIRLGIKNSRRISSVVD 344
                   TYT        R R  +      +   D
Sbjct: 391 SDPGFTLRTYTHLMPSSEGRTRKAVDGVYLAADPQD 426


>gi|229006821|ref|ZP_04164454.1| Integrase/recombinase [Bacillus mycoides Rock1-4]
 gi|228754443|gb|EEM03855.1| Integrase/recombinase [Bacillus mycoides Rock1-4]
          Length = 322

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 40/288 (13%), Positives = 91/288 (31%), Gaps = 30/288 (10%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
           L  +I + R +     L   +   +E +    +  +G    +++T  HI S + S   + 
Sbjct: 36  LSTVIRQMRATG----LRERTISDYELHIGHFMSVTGAQFLQELTVNHIYSWLSSMNVSN 91

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS--- 187
            + +  L  ++          ++ +N   SV+  K  +      T  ++    S      
Sbjct: 92  QTKLTRLKCLKAFLGRCFDNGWIEVNFWKSVK-IKVDSPVKEGATDREINLLLSMLDLTR 150

Query: 188 -EGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQ--KTGTIITVELPDGFM 242
               +  ++   +  +G+R     +   +H+  +N +  I     K    I +   D   
Sbjct: 151 FIELRDAVSVLLMYQTGIRVGTLSQLENKHVNLENKVLRIDGGILKNHESIHLPFDDVLA 210

Query: 243 KLLAMT-----------PIGKETFFINNDKQKM----NATQFSIWFKAKATKAGV-NKSA 286
           ++L               +  +  FI  +  ++         +      A   G  N + 
Sbjct: 211 RVLYALMKQNDIIRKECRVKNDYLFITKNGGRIATSPTNNNVTKRLSKHARDYGFKNINP 270

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIK 334
           H +R+  A      GA    +    G   +     Y    D+  +   
Sbjct: 271 HALRRGFAKNLLKKGANIALISKALGHSDLAVTTRYLH-LDKEEVAES 317


>gi|323484551|ref|ZP_08089916.1| site-specific DNA tyrosine recombinase [Clostridium symbiosum
           WAL-14163]
 gi|323402129|gb|EGA94462.1| site-specific DNA tyrosine recombinase [Clostridium symbiosum
           WAL-14163]
          Length = 280

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 42/263 (15%), Positives = 90/263 (34%), Gaps = 27/263 (10%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
           +++LI E  KS+H        +   + +   +    G    + +  ++ +S  +    T 
Sbjct: 15  IRYLIQE-EKSSHTV---EKYQRDLKKFVQFLR---GQEVTKDLVIEYKKSLSDRYAAT- 66

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP----WTKEDMQQFKSFW 186
            S    L S+    ++A    ++       V++ K + +   P     TKE+  +  +  
Sbjct: 67  -SVNSMLASLNHFMQFA---GWLEF----KVKQIKLQRQVYCPEEKELTKEEYYRLVNTA 118

Query: 187 SEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE--LPDGFM 242
               + R  L  + +  +G+R S+     V  +   +     +     I +   L    M
Sbjct: 119 KLMKKDRIGLIIQTICSTGIRISELIYITVDSVHTGVAYATCKGKSRQIFLPHKLRMLLM 178

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA---GVNKSAHGVRKFSATISAD 299
           K +    I +   F+  + + +N +      KA    A    V    H +R   A     
Sbjct: 179 KYIRQNQIRQGPVFLTREGKPVNRSNVWKEMKALCASARVLAVKVFPHNLRHLFARTYYR 238

Query: 300 AGATAHELMATYGWKTVDQAETY 322
                 +L    G  +++    Y
Sbjct: 239 MEKDISKLADLLGHSSINTTRIY 261


>gi|312965418|ref|ZP_07779650.1| phage integrase family protein [Escherichia coli 2362-75]
 gi|312289838|gb|EFR17726.1| phage integrase family protein [Escherichia coli 2362-75]
 gi|323159375|gb|EFZ45360.1| phage integrase family protein [Escherichia coli E128010]
          Length = 395

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 48/301 (15%), Positives = 101/301 (33%), Gaps = 28/301 (9%)

Query: 53  GSTPKREYINSPRKKPT--TLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDF 109
           G +P +E      +     T      ++ +      +A ++R    S +  ++  K G+ 
Sbjct: 79  GKSPAKEKARDKARVKGAETFGAWAEKWLRGYQ---MADSTRDMRRSVYTRELETKFGNQ 135

Query: 110 DYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE--RPK 165
              +IT + +R+  ++   +  P++A+     +  +++WA  +     NP   V      
Sbjct: 136 KLTEITHEDLRALTDAIVERGAPATAVHAREIVLQVYRWATERGQKVENPADLVRPASIA 195

Query: 166 RKTEGIRPWTKEDMQQFKSFW-SEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222
           R     R  T E+++    +    G+ P  R A + LL + +R S+   A    +  +  
Sbjct: 196 RFEPRDRTLTPEEIRIMYQYMGRIGTSPSIRAAVKLLLLTMVRKSELTNATWSEINFSEA 255

Query: 223 SIK----TQKTGTIITVELPDGFMKLLAMTPI---GKETFFINNDKQ--KMNATQFSIWF 273
                    K      V L    M +L        G +    +       M++   +   
Sbjct: 256 LWTIPKERMKRRNPHLVFLSRQAMDILIALKTFSGGSDYVLPSRYDSDVPMSSATLNRVM 315

Query: 274 KAKATKAGVNKS------AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
                 A            H +R+ ++T+  +AG     +      +       Y K   
Sbjct: 316 TMTYKLAQKEGQSLAKFGPHDLRRTASTLLHEAGYNTDWIEKCLAHEQKGVRAIYNKAEY 375

Query: 328 R 328
           R
Sbjct: 376 R 376


>gi|300872271|gb|ADK38963.1| IntI4 [Vibrio sp. V3(2010)]
          Length = 293

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 42/288 (14%), Positives = 86/288 (29%), Gaps = 57/288 (19%)

Query: 94  SFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYV 153
           ++  +  + I          +  K +   +         A +  +       +  ++  +
Sbjct: 2   AYLHWITRYIHFHNKKHPSLMGDKEVEEFLTYLAVQGKVATKTQSLALNSLSFLYKE--I 59

Query: 154 AINP-CLSVE--RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210
              P  L +   R + + +     T++++++         + +L  + L  SGLR  +  
Sbjct: 60  LKTPLSLEIRFQRSQLERKLPVVLTRDEIRRLLEIVDP--KHQLPIKLLYGSGLRLMECM 117

Query: 211 RAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLAMTPIGKETFFINN--------- 259
           R  VQ +  +  +I+    K G   TV L       L       + ++  +         
Sbjct: 118 RLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHLKEQIALAKRYYDRDLHQKNYGGV 177

Query: 260 -------------------------------------DKQKMNATQFSIWFKAKATKAGV 282
                                                 +  MN T      +  A +AG+
Sbjct: 178 WLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVMRRHHMNETVLQKAVRRSAQEAGI 237

Query: 283 NKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
            K+   H +R   AT   + GA    +    G   V   + YT   DR
Sbjct: 238 EKTVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHVLDR 285


>gi|296447605|ref|ZP_06889525.1| integrase family protein [Methylosinus trichosporium OB3b]
 gi|296254870|gb|EFH01977.1| integrase family protein [Methylosinus trichosporium OB3b]
          Length = 471

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 51/334 (15%), Positives = 110/334 (32%), Gaps = 41/334 (12%)

Query: 49  SALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGS--------LAVNSRI-SFESYF 99
           +A +G+ P  E     R+K  T++ L+  Y K   +          +   ++  +     
Sbjct: 87  AAASGNDPAGEVQEKRREK--TMRELLDFYEKHGCFIQRGIHKGKPMKPLTKQYTMARLR 144

Query: 100 DQIIRKSGDFDYRKITTKHIRSGVES---------RKHTPS----------SAIQFLTSM 140
           + +    G     ++T+  I + V            K  P           +A + +  +
Sbjct: 145 NHVEPLLGHRRASEVTSGDIETFVADVTAGKTAKDEKVGPRKRLIVRGGEGAARKVVRDL 204

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKSFWSEGSQPRLAF 196
             +F +  R  +V  NP       K      R  T +++    + F +   EG+ P+   
Sbjct: 205 SAVFSFGGRHGFVTKNPVEDASVRKTDNRRERFLTLDEVSRLGEAFDTVEKEGANPKGVA 264

Query: 197 EFLLY--SGLRCSDSCRAGVQHLQNN--IFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252
              L+  +G R ++        ++    +F     KTG  I    P     L  +   GK
Sbjct: 265 IARLWALTGCRRNEIAALKAHEVKLGSNLFEFDDTKTGKSIRPFGPAAAALLQRLLKDGK 324

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATY 311
           E +    +K           +      A +   + H +R    + +  +G       A  
Sbjct: 325 EGYLFPAEKGDGYYQGTRNVWAEVTKLASLPGVTPHTLRHTLGSTATSSGEALALTGAIL 384

Query: 312 GWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345
           G   +     Y     +    ++ ++R+  ++ +
Sbjct: 385 GHANLRSTAIYAHV--QRDPSLEAAKRVEKLLAA 416


>gi|288817618|ref|YP_003431965.1| phage integrase [Hydrogenobacter thermophilus TK-6]
 gi|288787017|dbj|BAI68764.1| phage integrase [Hydrogenobacter thermophilus TK-6]
 gi|308751216|gb|ADO44699.1| integrase family protein [Hydrogenobacter thermophilus TK-6]
          Length = 288

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 46/288 (15%), Positives = 100/288 (34%), Gaps = 30/288 (10%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
             L+  +++S    + +  + I++    +  I+  G+ D   I  + I   V++     S
Sbjct: 4   DHLLDTWKRSLE-RTKSARTVITYIKSLESFIKHIGEKDLIHIDPRRIYEYVDTSSLNTS 62

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP----------KRKTEGIRPWTKEDMQQ 181
           S +  L++++  +K+A R+ YV       +E                   +  T+E++ +
Sbjct: 63  SILTHLSAIKHFYKFAFRRGYVDKEKYSDIESVIDEVREDLGRNIAKRYPKALTEEEINK 122

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL---QNNIFSIKTQ----KTGTIIT 234
             S    G++    +   LYSG+R S+            ++ +  I+      K      
Sbjct: 123 ILSAVK-GAKYEKIYVLFLYSGIRLSEYLSLRKSDFYQDKSGLLWIRLSADITKRRKERL 181

Query: 235 VELPDGFMKLLAMTPIGKETFF----INNDKQKMNATQFSIWF-KAKATKAGVNKSAHGV 289
           V +     +           +      N   ++ +   F+    +       +  S H  
Sbjct: 182 VPVLGSSKEETYAVIDRLLVWIESYEENFRVKRGSLQVFTNRLSRKLC----IPFSLHSF 237

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQA-ETYTK-GADRIRLGIKN 335
           R    T   ++G  A  +    G   V    + Y K   +R R  ++N
Sbjct: 238 RHTYITNLVNSGFPAEVVKEFAGHSNVRTTIDIYYKFSQERARQLVEN 285


>gi|284008591|emb|CBA75173.1| phage integrase [Arsenophonus nasoniae]
          Length = 300

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 43/277 (15%), Positives = 78/277 (28%), Gaps = 25/277 (9%)

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
           ++    L  LI  +  S     + ++   + +S         G     + T K   S  E
Sbjct: 13  KEDRRKLIELIDTWYNS---HGVTIDDGDTRKSAMIYASDCMGLPLATEFTAKLFSSYRE 69

Query: 125 SR------------KHTPSSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGI 171
            R            K +P +    L   R +F    R   +   NP  S+   K +   +
Sbjct: 70  KRISGKLRRTERLDKVSPRTMNLELAYFRAMFNELKRLGEWKHENPVESIRPFKTEEAEM 129

Query: 172 RPWTKEDMQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229
                +++          S   L    +  L +G R S++      ++     +    K 
Sbjct: 130 SFLDHDEINLLLKECVNSSNKHLLTVVKICLSTGARWSEAESLRGCNVSKFRITYTNTKG 189

Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGV 289
               TV + +    L+A        F           + F    K         + +H +
Sbjct: 190 NRNRTVPISEELYNLIAEKKTIGALF-------SSCYSAFRTALKRTKIVLPDGQMSHVL 242

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           R   A+     G     L    G   +     Y   A
Sbjct: 243 RHTFASHFMMNGGNILVLQRILGHTDIKMTMRYAHFA 279


>gi|260593190|ref|ZP_05858648.1| integrase [Prevotella veroralis F0319]
 gi|260534898|gb|EEX17515.1| integrase [Prevotella veroralis F0319]
          Length = 435

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 54/289 (18%), Positives = 95/289 (32%), Gaps = 27/289 (9%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
           + + R    + +L+   R   E   D+ ++        K   +  R  ++ R    ++  
Sbjct: 119 VGKLRTEGTYLNLSHADRNLHEFVKDKGVQDILIGAITKDLFEEYRFYLKKRGLKGTTIN 178

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF---KSFWSEGSQ 191
            +L  +  L   AV Q  +  NP  + +  K     IR   K D+ +    +   SE  Q
Sbjct: 179 NYLCWLSRLMYRAVSQNIIRCNPFENAKYEKEDKN-IRYLQKYDVARLMTMRMNDSEAEQ 237

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQ---NNIFSIK--TQKTGTIITVELPDGFMKLL- 245
            RL F F  ++GL  +D      +H+Q   +    I+   QKT     V L      ++ 
Sbjct: 238 ARLMFIFSCFTGLAIADMETLQYKHIQTAADGQKYIRKERQKTKVEFVVPLHPIAETIIS 297

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFK-------------AKATKAGV--NKSAHGVR 290
                         D+Q M        F                    G+    S H  R
Sbjct: 298 HCRKANHNDLTTGQDEQTMKEKGDGFVFHPDSSRSVMNSKLYIVGKACGISQRLSFHMAR 357

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
               T+S  AG     +    G  ++   + Y +  D      ++  R+
Sbjct: 358 HTFGTMSLSAGIPIESIAKMMGHASISSTQIYAQVTDCK--ISEDMDRL 404


>gi|46580602|ref|YP_011410.1| phage integrase family site specific recombinase [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|46450021|gb|AAS96670.1| site-specific recombinase, phage integrase family [Desulfovibrio
           vulgaris str. Hildenborough]
          Length = 309

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 45/309 (14%), Positives = 94/309 (30%), Gaps = 25/309 (8%)

Query: 48  MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG 107
             A               +   T+    + Y +   W +   + +     Y   I    G
Sbjct: 4   QLASALRADAVRLSKQVVRANMTVGDAWTLYCR--DWLASKSSYKTDRSLYLKHIEPVIG 61

Query: 108 DFDYRKITTKHIRSGVESRKH-TPSSAIQFLTSMRVLFK----WAVRQEYVAINPCLSVE 162
                ++ T  I   +      +P + +  +  ++ L++    W V        P   V 
Sbjct: 62  SRRMDEVKTVDINELLRRMGDLSPQTRVHAVGLVKRLYRRMAGWGVYHG---PTPTDGVV 118

Query: 163 RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL-AFEFLLYSGLRCSDSCRAGVQH--LQN 219
             +     +R  + ++ +         S          L++GLR  +     VQH  +  
Sbjct: 119 VKRVDNARMRFLSPKEARWLLEELDCRSPQFADVCRVSLFAGLRLREIFSLKVQHVNIDA 178

Query: 220 NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET---FFINNDKQKMNA--TQFSIWFK 274
            + ++   K+G+ +   + +   ++LA   +G+      F     + M      F    +
Sbjct: 179 RVIAVMDAKSGSRMA-SMTEDLARVLARYVVGRRPEEFVFTKASGEGMRTINQTFVRVVR 237

Query: 275 AKATKAGVN-----KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DR 328
                 GV+        H +R   A+     G   + +    G   V+    Y K A D 
Sbjct: 238 DLELNDGVDDARHKVVFHTLRHTFASWLVQRGVPLYTVADLMGHSVVEMTRRYAKLAPDT 297

Query: 329 IRLGIKNSR 337
            R  +    
Sbjct: 298 RREAVNQLD 306


>gi|306842844|ref|ZP_07475484.1| site-specific tyrosine recombinase XerD [Brucella sp. BO2]
 gi|306287038|gb|EFM58549.1| site-specific tyrosine recombinase XerD [Brucella sp. BO2]
          Length = 247

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/229 (15%), Positives = 81/229 (35%), Gaps = 27/229 (11%)

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           + ++   P+S  + L+++R  F++   + +   +P   ++ PK++    +  + E++ + 
Sbjct: 1   MAAQGFAPTSQARRLSALRQFFRFLYSEGFRQDDPTGILDAPKKQKPLPKIMSVENVGKL 60

Query: 183 KSFWS-------------EGSQPRLAFEFLLYSGLRCSDSCRAGVQ-HLQNNIFSIKTQK 228
               +             +  +     E L  +GLR S+     V     ++ F +   K
Sbjct: 61  LDRAALEADEAAEPGERIKALRLHALLETLYATGLRVSELVGLPVTVARTDHRFLLVRGK 120

Query: 229 TGTIITVELPDGFMKLLAM-------TPIGKETFFIN---NDKQKMNATQFSIWFKAKAT 278
                 V L     + L          P   +  ++    ++   +    F+   K  A 
Sbjct: 121 GSKDRMVPLSRKAREALQKFLTLRDSLPGSDDNPWLFPAFSESGHLARQVFARELKGLAA 180

Query: 279 KAGVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +AG+     S H +R   A+     GA    +    G   +   + YT 
Sbjct: 181 RAGLAASSVSPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTH 229


>gi|304413964|ref|ZP_07395381.1| phage integrase [Candidatus Regiella insecticola LSR1]
 gi|304283684|gb|EFL92079.1| phage integrase [Candidatus Regiella insecticola LSR1]
          Length = 380

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 52/280 (18%), Positives = 102/280 (36%), Gaps = 30/280 (10%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWA 147
           A  S+++   Y +    +S     +       +     +  T S+  + L  M+ L + A
Sbjct: 105 AAISKMTNRRYAENWRLQSEAMVRKGQKAPEYQE----KAVTLSTKAKHLALMKSLLRTA 160

Query: 148 -VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRC 206
               +++   P   ++ P+ K + IR     + Q+      E  +  + F     +GLR 
Sbjct: 161 ERDWKWLEKAPV--IKVPQVKNKRIRWLKPAEAQRLIDECPEPLKSVVKFALA--TGLRR 216

Query: 207 SDSCRAGVQHLQN----NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFF------ 256
           S+      + +         + +  K+G  I V L +   K+L        T+       
Sbjct: 217 SNIINLEWKQIDMPRRVAWINPEDSKSGQAIGVALNETSCKILRDQIGKHHTWVFVYTEA 276

Query: 257 -------INNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELM 308
                  +    +KM     S W K    +AG+     H +R   A+    AG     L 
Sbjct: 277 KTRTDGTLTPSVRKMRVDANSAW-KQALKRAGIEAFRFHDLRHTWASWLIQAGVPLSVLQ 335

Query: 309 ATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
              GW+++D    Y   + R     ++++ I ++ D+D P
Sbjct: 336 EMGGWESIDMVRRYAHLSPRHL--TEHAKHIDAIFDNDVP 373


>gi|187935337|ref|YP_001886583.1| DNA integration/recombination protein [Clostridium botulinum B str.
           Eklund 17B]
 gi|187723490|gb|ACD24711.1| DNA integration/recombination protein [Clostridium botulinum B str.
           Eklund 17B]
          Length = 337

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/300 (12%), Positives = 91/300 (30%), Gaps = 49/300 (16%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS------------------------ 106
              +I ++    ++ +L++ +  S+        +                          
Sbjct: 11  FDEIIQDFLDYCNYKNLSLKTIKSYHQTLTLFFKYLEEEKDIKNVNKIGKQIVEEYIKFT 70

Query: 107 ---GDFDYRKITTKHIRSGVESRKH-----TPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158
              G + +       +++ ++ R       + S+   +L +++V F +    + +  N  
Sbjct: 71  QERGKYSFVASIDGMVKANIDKRTDIGEKVSTSTLNNYLRNIKVFFSYLEENQIIRENTV 130

Query: 159 LSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGV 214
              +  K + +     T  +  +             +  +    +  +G+R +++    +
Sbjct: 131 KKCKYIKNERKSKEQLTDNEFNKLIKSMDLTKFHEYRDYVITNLIFDTGMRLNETLNLTI 190

Query: 215 QHLQNNI----FSIKTQKTGTIITVE----LPDGFMKLLAMTPIGKET--FFINNDKQK- 263
             +           +  K      V     +     + L      +ET   F        
Sbjct: 191 NDVDFTRRTIMIDSQISKGRKDRVVFYSQTMSKLLQRWLRFKDTMQETELLFPTQRTNGV 250

Query: 264 MNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
           ++ + F   F+    +A +NKS   HG+R   A     A +  H L    G  +V   E 
Sbjct: 251 LSVSNFERNFRIYLKRAKINKSITPHGLRNNFARRFLLASSDIHTLSKILGHSSVTVTEK 310


>gi|221140347|ref|ZP_03564840.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           str. JKD6009]
 gi|258452366|ref|ZP_05700376.1| phage integrase [Staphylococcus aureus A5948]
 gi|282904663|ref|ZP_06312538.1| integrase [Staphylococcus aureus subsp. aureus C160]
 gi|282909331|ref|ZP_06317147.1| phage integrase [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|283958775|ref|ZP_06376221.1| integrase [Staphylococcus aureus subsp. aureus A017934/97]
 gi|284025051|ref|ZP_06379449.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           132]
 gi|304379190|ref|ZP_07361933.1| integrase [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|257859953|gb|EEV82791.1| phage integrase [Staphylococcus aureus A5948]
 gi|282326899|gb|EFB57196.1| phage integrase [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282594912|gb|EFB99888.1| integrase [Staphylococcus aureus subsp. aureus C160]
 gi|283789815|gb|EFC28637.1| integrase [Staphylococcus aureus subsp. aureus A017934/97]
 gi|302333670|gb|ADL23863.1| bacteriophage integrase [Staphylococcus aureus subsp. aureus
           JKD6159]
 gi|302751899|gb|ADL66076.1| bacteriophage integrase [Staphylococcus aureus subsp. aureus str.
           JKD6008]
 gi|304342236|gb|EFM08132.1| integrase [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|320143657|gb|EFW35435.1| site-specific recombinase, phage integrase family [Staphylococcus
           aureus subsp. aureus MRSA177]
          Length = 345

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 50/325 (15%), Positives = 110/325 (33%), Gaps = 26/325 (8%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT--TLKWLIS 76
           GK   Y  K  G+R R               A +    K   + S        TL+    
Sbjct: 8   GKKWQYEFKYEGKRYRKKGFRTK------REANSAGLDKLNELRSGFNIDNYITLEEYFE 61

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRSGVE--SRKHTPSSA 133
            + K+     +  N+   + +    I + K G  +  KI  +  +  +   S++H   + 
Sbjct: 62  NWIKTYKQPVVKENTYRHYRNALQHIQKHKIGKMELSKINRQVYQKFINDYSKEHAKETI 121

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSV-----ERPKRKTEGIRPWTKEDMQQFKSFWSE 188
            +   ++R     A+    +  NP   V     +  K + E     T+ ++ +      +
Sbjct: 122 RKTNGAIRSALDDALYDGLIFKNPAYKVNYKAGKPTKSEQEKFISVTEYEILK-DHVRKK 180

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTG-TIITVELPDG----F 241
            ++  LA   ++ +G R S +    ++H+    N   I  +KT  +   + +        
Sbjct: 181 RTRSSLALFIMICTGCRVSGARNIKIEHINQVKNTIFIDERKTDTSPRYISIAKSDMKHI 240

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADA 300
           M +++   I  + +        +N    +   K+      +   ++H +R    +     
Sbjct: 241 MDVISTFAISYDGYIFKEAGSIINLHAINNALKSACRVNNIPIITSHALRHTHCSYLLAK 300

Query: 301 GATAHELMATYGWKTVD-QAETYTK 324
           G + H +    G K +      Y+ 
Sbjct: 301 GVSIHYISKRLGHKNIAITTSVYSH 325


>gi|26249046|ref|NP_755086.1| hypothetical protein c3204 [Escherichia coli CFT073]
 gi|26109453|gb|AAN81656.1|AE016765_58 Hypothetical protein c3204 [Escherichia coli CFT073]
          Length = 390

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 52/283 (18%), Positives = 96/283 (33%), Gaps = 34/283 (12%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
               T+K  + EY +      L+ ++   ++     +          ++T   +++ ++S
Sbjct: 87  AASKTVKMYLDEYLEICETRKLSPSTIGGYKKCRSALASLH-ICPASELTPATLKAWIQS 145

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR--------PWTKE 177
           +K T  +    L+ +R     AV    + INP   V   + +++           P +  
Sbjct: 146 QKTTLKTIRNQLSFLRSALDEAVTDGVLQINPVSLVTASRYQSDKSEAESSYVVDPLSPA 205

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-------------NNIFSI 224
           ++    +         L F F +++GLR S+ C      +                +   
Sbjct: 206 EVDALLAAAGNKQWENL-FRFAIHTGLRSSELCALRWHDIDFVGKTAHVQSASVVGVIKG 264

Query: 225 KTQKTGTIITVELPDGFMKLL----AMTPIGKETFFIN-NDKQKMNATQFSIWFKAKA-- 277
              K GT   VEL +  M  L      T +   T F +    +   +   +I  KA    
Sbjct: 265 TKTKAGTR-KVELTEEAMLALINQKPFTFMKDATVFEDPKTNKPWTSAD-AIRKKAWVPT 322

Query: 278 -TKAGVNKS-AHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
             KAG+     +  R   AT     GA    L A  G K  + 
Sbjct: 323 LRKAGIRYRNPYQTRHTFATRHISRGANLFWLAAQMGHKGPEM 365


>gi|295113292|emb|CBL31929.1| Site-specific recombinase XerD [Enterococcus sp. 7L76]
          Length = 382

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 52/350 (14%), Positives = 119/350 (34%), Gaps = 43/350 (12%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP---- 64
            +V     + G   + +R  +   ++           +  +A       +  + +     
Sbjct: 11  KYVFSYSNKKG-TFWGYRYPYYNSLKHRKETSKRGFESERAANKALLKIQYDLETQNTSF 69

Query: 65  -RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIR-- 120
              K  T+   I  +   A   + +V+++ + ES     I    G+     +     +  
Sbjct: 70  IENKQLTIDEWIKVWIPYAQ-DNWSVSTKQNIESAIKFHISPLIGNQKLSSLNKITYKRE 128

Query: 121 ---SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
                 +  K+T S+   +   +  +   AV  + +  N     +     +  +R ++K+
Sbjct: 129 FIDKLRQENKYTESTIQTWHKIVMRMINAAVHNQIIPSNTLTGFKF--DLSNNVRSFSKK 186

Query: 178 DMQQFKSFWS-EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ------------NNIFSI 224
           ++Q+F +    E  Q ++ F  LL SG+R  +        +              +    
Sbjct: 187 ELQRFIAVLENEDIQTQVIFLTLLKSGMRKGELMGLRWSDIDLNEKYFDINSTRGDYGEN 246

Query: 225 KTQKTGTIITVELPDGFMKLLAMTP--------------IGKETFFINNDKQKMNATQFS 270
           K +   +I  V   +  + L+                    K+ F +++    +  ++ +
Sbjct: 247 KPKTKTSIRKVYFDNSLLTLIKKYKNHEKERLFREGIILSDKDYFILSSRNLPIKQSRIT 306

Query: 271 IWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
             F+    KA V N + HG+R   AT   +AGA    +    G K ++  
Sbjct: 307 YMFRLLCEKAEVQNITVHGLRHTHATFLIEAGANIKYVSTRLGHKNINIT 356


>gi|242241242|ref|YP_002989423.1| integrase family protein [Dickeya dadantii Ech703]
 gi|242133299|gb|ACS87601.1| integrase family protein [Dickeya dadantii Ech703]
          Length = 327

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 51/305 (16%), Positives = 102/305 (33%), Gaps = 20/305 (6%)

Query: 26  RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG 85
           R G   R R     E+     Y  +       +       ++ + L  L   Y       
Sbjct: 20  RNGKRIRRRFEKKTEAVAFERYTLSRADKKEWQHGYGVEHRQLSELVELWWLYYG----Q 75

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRV 142
           +L        + +  +   +  D +  +I  + I      R     + S+  + +  +  
Sbjct: 76  NLKNGLIE--KRHLKRTAAQMDDPEICRINKRSILEFRTRRLYDGISSSTVNRDIYRLSG 133

Query: 143 LFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201
           +F   ++ E Y   NP   +     K   +   T+ ++ +      EG Q RLA    L 
Sbjct: 134 MFSALIKLEIYTGENPLKELPPLPEKQPTVTFLTESEIARLLDTM-EGDQYRLAV-LCLS 191

Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK 261
           +G R  ++     + + +N  +    K G   T+ + +   +++     GK         
Sbjct: 192 TGARWGEASTLRAEQVMHNRVTFTETKNGKNRTIPISEEVTRIIKTRETGKLF------- 244

Query: 262 QKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
            K++ + F    KA        +++H +R   A+     G     L    G  ++ Q  T
Sbjct: 245 -KVDYSAFCEQIKAVKPDIPKGQASHILRHTFASHFVMNGGNLVALQQILGHASIQQTMT 303

Query: 322 YTKGA 326
           Y   A
Sbjct: 304 YAHLA 308


>gi|94499085|ref|ZP_01305623.1| site-specific recombinase, phage integrase family protein
           [Oceanobacter sp. RED65]
 gi|94428717|gb|EAT13689.1| site-specific recombinase, phage integrase family protein
           [Oceanobacter sp. RED65]
          Length = 319

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 46/297 (15%), Positives = 84/297 (28%), Gaps = 59/297 (19%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF----LTSM 140
              +  +  ++  +    I   G      +    + S +         AI      L ++
Sbjct: 17  AGYSERTIKTYIYWIKYFIHFHGKRHPETLHNDEVCSFLSHLASNKHMAINSQKTALNAL 76

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200
             L+   ++Q        L     +R+    +  T++++++  +    G + RL    + 
Sbjct: 77  AFLYNQFLKQPLGD----LGFVYAQRQRRLPQVLTQQEVKRIIN--ELGERDRLIVSLMY 130

Query: 201 YSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGT--------------------IITVELP 238
            SGLR S+  R  V+  H +     +   K G                      I ++  
Sbjct: 131 GSGLRISECLRLRVKDIHFETGSLDVIDGKGGKDRKTILSKNIVGDLQNQIQNSIALQEK 190

Query: 239 DGFMKLLAMTPIGKETFFINNDKQK------------------------MNATQFSIWFK 274
           D    L    P        N  +Q                         ++ T       
Sbjct: 191 DNLSGLGPSLPGALGRKLPNAYRQPAWMFVFPSTTICKHPITGIHCRHHLHETVMRKALA 250

Query: 275 AKATKAGV-NKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
                AG+ NK    H  R   AT    AG     +    G K V   + YT    +
Sbjct: 251 KACKSAGIYNKRITCHTFRHSFATELLRAGRDIRTVQELLGHKDVSTTQIYTHVVGQ 307


>gi|323972727|gb|EGB67928.1| phage integrase [Escherichia coli TA007]
          Length = 399

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 40/251 (15%), Positives = 99/251 (39%), Gaps = 21/251 (8%)

Query: 93  ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--------KHTPSSAIQFLTSMRVLF 144
              + +   I  + G   Y  +  + I+  +           ++ PS+  + L  ++ + 
Sbjct: 125 KDVQRFTQYIEPRLGKIRYCDLRAREIQQVLFDMLEGRIHGQQYAPSTCNRALAILKTMG 184

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL--AFEFLLYS 202
           ++A+RQ+ +  N    +   K   +  R +  +++++     ++            LL +
Sbjct: 185 RYALRQDVLEKNEADKIPLLKENNQRTRFFDADEIRRILDAATQYPNKAAGGLIAMLLLT 244

Query: 203 GLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE---TFFI 257
           G R S+      +H+   N    I   K G   TV L D  + ++   P        F I
Sbjct: 245 GTRKSEMLNVRHEHIDRANRTLFIPYTKNGRSRTVYLSDAALSIIDAIPRVGSNPYLFAI 304

Query: 258 NNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAG-ATAHELMATYGW 313
            ++ + ++  +++  ++    + G++K+    H  R   A++   +G  + +++ A    
Sbjct: 305 KDNGKPISEPRWA--YEKILAQCGIDKNEVCFHTTRHSVASLLVSSGQFSLYDVKAQLAH 362

Query: 314 KTVDQAETYTK 324
            ++   E Y K
Sbjct: 363 ASIQSTERYAK 373


>gi|309702155|emb|CBJ01470.1| putative phage integrase [Escherichia coli ETEC H10407]
          Length = 399

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 40/251 (15%), Positives = 99/251 (39%), Gaps = 21/251 (8%)

Query: 93  ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--------KHTPSSAIQFLTSMRVLF 144
              + +   I  + G   Y  +  + I+  +           ++ PS+  + L  ++ + 
Sbjct: 125 KDVQRFTQYIEPRLGKIRYCDLRAREIQQVLFDMLEGRIHGQQYAPSTCNRALAILKTMG 184

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL--AFEFLLYS 202
           ++A+RQ+ +  N    +   K   +  R +  +++++     ++            LL +
Sbjct: 185 RYALRQDVLEKNEADKIPLLKENNQRTRFFDADEIRRILDAATQYPNKAAGGLIAMLLLT 244

Query: 203 GLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE---TFFI 257
           G R S+      +H+   N    I   K G   TV L D  + ++   P        F I
Sbjct: 245 GTRKSEMLNVRHEHIDRANRTLFIPYTKNGRSRTVYLSDAALSIIDAIPRVGSNPYLFAI 304

Query: 258 NNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAG-ATAHELMATYGW 313
            ++ + ++  +++  ++    + G++K+    H  R   A++   +G  + +++ A    
Sbjct: 305 KDNGKPISEPRWA--YEKILAQCGIDKNEVCFHTTRHSVASLLVSSGQFSLYDVKAQLAH 362

Query: 314 KTVDQAETYTK 324
            ++   E Y K
Sbjct: 363 ASIQSTERYAK 373


>gi|259501397|ref|ZP_05744299.1| phage integrase family integrase/recombinase [Lactobacillus iners
           DSM 13335]
 gi|302190882|ref|ZP_07267136.1| phage integrase, N-terminal SAM domain protein [Lactobacillus iners
           AB-1]
 gi|259167201|gb|EEW51696.1| phage integrase family integrase/recombinase [Lactobacillus iners
           DSM 13335]
          Length = 329

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 34/248 (13%), Positives = 77/248 (31%), Gaps = 14/248 (5%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHTPSSAIQFLTSMRVL 143
           +  S   + +  + +  K    + R++ T  IR+ +    + +  +  +       +   
Sbjct: 68  SEKSLTYYRATIEVMTTKI-KKNVREMETDDIRTYLTEYQQEKNSSKVTVDNIRRILSSF 126

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203
           F W   + Y+  +P   + + K        +T E +++ +    E  +     + L  +G
Sbjct: 127 FSWLEDENYILKSPARRIHKVKAALTIKETYTDEALEKMRDSCEEP-RDLALIDILASTG 185

Query: 204 LRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDG----FMKLLAMTPIGKETFFIN 258
           +R  +        +       +   K      V          +  L          F++
Sbjct: 186 MRVGELVLLNRDDINFEERECVVFGKGSKERMVYFDARTKIHLLTYLQGRTDDNPALFVS 245

Query: 259 NDKQKMNAT--QFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKT 315
                            +   +K  + K   H  R+  AT++ D G    +L    G K 
Sbjct: 246 LRAPHERLKIGGVECRLRELGSKLDIEKVHPHKFRRTLATMAIDKGMPIEQLQQLLGHKR 305

Query: 316 VDQAETYT 323
           +D    Y 
Sbjct: 306 IDTTLQYA 313


>gi|212715402|ref|ZP_03323530.1| hypothetical protein BIFCAT_00297 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661708|gb|EEB22283.1| hypothetical protein BIFCAT_00297 [Bifidobacterium catenulatum DSM
           16992]
          Length = 276

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 40/266 (15%), Positives = 80/266 (30%), Gaps = 13/266 (4%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
           + ++ KS      + ++               G      +TT  + S +  +   P +  
Sbjct: 16  VEDWVKSLIASGYSEDTVRCRRYKLTHAAIGLGKSPV-DVTTGDLVSWMAGQHWKPETLK 74

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
            +  ++   F    R      NP   + + KR     RP   + +    +   E     L
Sbjct: 75  AYRNTLTSFFGRLQRTSVRPDNPAADLPKVKRPKAHPRPCPDKYILAALAKADE--TETL 132

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIF---SIKTQKTGTIITVELPDGFMKLLAMTPIG 251
                   GLR  +      + + +++     I   K      V LPD   + +      
Sbjct: 133 MLRLAAECGLRRGEIAGVNSRDVMDDLLGKSLIVRGKGDKQRIVPLPDDLAEAIESC--- 189

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATY 311
               F    +  +  +           +      AH +R   AT +  A    + +    
Sbjct: 190 GGWLFPGRWQGHVEESYVGKRISRLLPE---GYGAHSLRHRYATATYAATHDLYLVARLL 246

Query: 312 GWKTVDQAETYTKGAD-RIRLGIKNS 336
           G  +V+  + Y    D R+R G+   
Sbjct: 247 GHASVETTQIYVAMPDARLRAGMAAV 272


>gi|206580735|ref|YP_002237616.1| site-specific recombinase, phage integrase family [Klebsiella
           pneumoniae 342]
 gi|206569793|gb|ACI11569.1| site-specific recombinase, phage integrase family [Klebsiella
           pneumoniae 342]
          Length = 308

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 40/288 (13%), Positives = 88/288 (30%), Gaps = 43/288 (14%)

Query: 71  LKWLISE---YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127
           L+ LI +   YR++     L   +  +F  +         +     +T + +++ +  + 
Sbjct: 3   LQSLIDQFIAYRQALGEIWLDNCTPRAFGRFMGA------EASLEDVTPESVKAFLAGKG 56

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAIN---------PCLSVERPKRKTEGIRPWTKED 178
               +    L+ +R L+++AV +     N         P         + E I  +   +
Sbjct: 57  ALTQTWHIKLSGLRSLYQYAVSRGLADTNPLPVMSPARPAAFEPYIYSQAELISLFKAAE 116

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN--IFSIKTQKTGTIITVE 236
              +      G    L    +  +GLR S+      + +     +  ++  K G    V 
Sbjct: 117 TVAWARTLYAGDL-HLILLLIYSAGLRVSELISLNREDVGLKECVLKVRQSKFGKTRLVP 175

Query: 237 LPDGFMKLLAMTPIGKET------FFINNDKQKMNATQFSIWFKAKATKAGVNK------ 284
                   L        T      FF+++   ++       +F+    + G+ +      
Sbjct: 176 FSPQLRDKLLTVEARYNTTECSTPFFVSHAGNRICTYTLQNYFRRLRNECGITRHDGARY 235

Query: 285 --SAHGVRKFSA----TISADAGATAH----ELMATYGWKTVDQAETY 322
               H +R   A    T     G        +L    G   +   + Y
Sbjct: 236 EPRIHDLRHSFAVHRLTSWYRNGDDVQLLLPQLSVYLGHVHLRATQVY 283


>gi|228950790|ref|ZP_04112918.1| Phage integrase [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|228808877|gb|EEM55368.1| Phage integrase [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
          Length = 355

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 40/287 (13%), Positives = 95/287 (33%), Gaps = 35/287 (12%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE 124
               +   L+  Y +      +  N+  + +   + +I+         +I   HIR    
Sbjct: 53  SSDMSFASLVELYMEDIV-HRIRPNTFENKKYIINSRILPFFSKIAINEIKPMHIRKWQN 111

Query: 125 ---SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP-KRKTEGIRPWTKEDMQ 180
              S+  + +        +  +  +AV+   ++ NP   V    K++ + +  WT E+  
Sbjct: 112 TLISQGFSQTYLKTINNQLNAILNFAVKFYGLSANPSKVVGSIGKKQADSMNFWTLEEFN 171

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---------------NNIFSIK 225
            F     +  + ++ F  L ++G+R  +      + +                N    I 
Sbjct: 172 LFYEQLEK-KESKVIFSILFWTGIRSGELLGLQWKDIDLLSNTISITKSLQKVNGETVIN 230

Query: 226 TQKT-GTIITVELPDGFMKLL-----AMTPIGKETFFINNDKQKMNATQFSIWFKAKATK 279
             KT  +   + +P     L+      +       F  +  K  +         +    K
Sbjct: 231 PPKTPKSKRIIHIPLALSALIVKYKNKLYKPKHNDFLFDCSKYYVLYE-----LRRGIKK 285

Query: 280 AGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
           A + K   H +R   A++  + G +   +    G + ++   + Y+ 
Sbjct: 286 ANIKKIRVHDLRHSHASLLIELGYSPLLISERLGHEKIETTLQVYSH 332


>gi|83643306|ref|YP_431741.1| integrase [Hahella chejuensis KCTC 2396]
 gi|83631349|gb|ABC27316.1| Integrase [Hahella chejuensis KCTC 2396]
          Length = 336

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 46/317 (14%), Positives = 96/317 (30%), Gaps = 37/317 (11%)

Query: 30  GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAV 89
           G+RIR  +P +             +       + P K    L  L++       W  L  
Sbjct: 21  GKRIRKTFPTKRQ--AEQWQIDQKAKANAGEWSPPNKDRRKLSDLVN------TWYDLHG 72

Query: 90  NSRIS---FESYFDQIIRKSGDFDYRKITTKH---IRSGVESRKHT-------PSSAIQF 136
           ++             ++ + GD   +  T +     R    ++KH        P++    
Sbjct: 73  HTLKDCDNRLRSLTALVNRLGDPIAKNFTGEDFLEYRRFRLTQKHEHRDKLVEPNTVNHE 132

Query: 137 LTSMRVLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE--GSQPR 193
              +  +F   ++ + +   NP   + +       +    +++++   +   E       
Sbjct: 133 HAYLFAVFSKLIKIKNWKLDNPLKGLSKLTIDEPALVYLEQDEIRALLASLKESKNPNVL 192

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE 253
           +  +  L +G R  ++     Q ++         K      V + D   K +        
Sbjct: 193 VISKICLSTGARWGEAESLQAQQVKQGKIHFIKTKNSKSRAVPISDELSKEIIAGRPRFG 252

Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGVNKS----AHGVRKFSATISADAGATAHELMA 309
             F    KQ          F+    ++G+N       H +R   A+          +L  
Sbjct: 253 RLFPGTSKQA---------FRLAVERSGINLPDGQMTHVLRHTFASHYMINDGNILKLKD 303

Query: 310 TYGWKTVDQAETYTKGA 326
             G KT+     Y K A
Sbjct: 304 ILGHKTLSMTIRYAKLA 320


>gi|54293140|ref|YP_125555.1| hypothetical protein lpl0179 [Legionella pneumophila str. Lens]
 gi|53752972|emb|CAH14408.1| hypothetical protein lpl0179 [Legionella pneumophila str. Lens]
          Length = 401

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 45/288 (15%), Positives = 88/288 (30%), Gaps = 36/288 (12%)

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR 126
             T   L+ +Y   A   +L  ++   +    +  +    G    R+++   IR+ +   
Sbjct: 92  KATTAELLKDYMAIAE-RTLEASTYNGYRKVCEAHLYPAFGKIPIRELSPVIIRNWITGL 150

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF---- 182
             T  +    LT +R +   A+    +  NP   +   K   +     +  ++  F    
Sbjct: 151 NVTVKTVRNILTPLRNMLDQAMNDGIIERNPLDRLVLSKLLNKKTSK-SDWEVDPFDQDE 209

Query: 183 -KSFWSEGS-QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK------------ 228
            K+     + Q R  F+F  +SGLR S+        +     +++  K            
Sbjct: 210 IKAILDAATGQARNLFQFAFFSGLRTSELIALEWNDIDWLKGTVRVSKAVVLKQEKGTKT 269

Query: 229 TGTIITVELPDGFMKLLAMTPI-----GKETFFINNDKQKMNATQFSIWFKAKA-----T 278
              +  V L    +  L          G   F+                 +         
Sbjct: 270 KSGVRDVLLLPPAVDALKNQKAFTYLEGSRVFYNPRTNSPWETDGQ---IRKTCWTHLLK 326

Query: 279 KAGVNKS-AHGVRKFSATISADAGATAHELMATYGWKTVDQ-AETYTK 324
           KAGV     +  R   A++   AG     L    G +  +   + Y +
Sbjct: 327 KAGVRYRNPYQTRHTYASMLLSAGENPLWLATQMGHRDTEMIIKHYGR 374


>gi|54296171|ref|YP_122540.1| hypothetical protein lpp0194 [Legionella pneumophila str. Paris]
 gi|53749956|emb|CAH11341.1| hypothetical protein lpp0194 [Legionella pneumophila str. Paris]
          Length = 402

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 47/288 (16%), Positives = 90/288 (31%), Gaps = 36/288 (12%)

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR 126
             T   L+ +Y   A   +L  ++   +    +  +    G    R+++   IR+ +   
Sbjct: 92  KATTAELLQDYMAIAE-RTLEASTYNGYRKVCETHLYPAFGKIPIRELSPVIIRNWITGL 150

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF---- 182
             T  +    LT +R +   A+    +  NP   +   K   +     +  ++  F    
Sbjct: 151 NVTVKTVRNILTPLRNMLDQAMNDGIIERNPLDRLVLSKLLNKKTSK-SDWEVDPFDQDE 209

Query: 183 -KSFWSEGS-QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ------------- 227
            K+     + Q R  F+F  +SGLR S+        +     +++               
Sbjct: 210 IKAILDAATGQARNLFQFAFFSGLRTSELIALEWNDIDWLKGTVRVSKAVVLKQEKGTKT 269

Query: 228 KTGTIITVELPDGFMKLLAMTP----IGKETFFINNDKQKMNATQFSIWFKAKA-----T 278
           K+G    + LP  F  L          G   F+                 +         
Sbjct: 270 KSGVRDVLLLPPAFDALKNQKAFTYLEGSRVFYNPRTNTPWETDGQ---IRKTCWTHLLK 326

Query: 279 KAGVNKS-AHGVRKFSATISADAGATAHELMATYGWKTVDQ-AETYTK 324
           KAGV     +  R   A++   AG     L    G +  +   + Y +
Sbjct: 327 KAGVRYRNPYQTRHTYASMLLSAGENPLWLATQMGHRDTEMIIKHYGR 374


>gi|306833129|ref|ZP_07466259.1| phage integrase family site-specific recombinase [Streptococcus
           bovis ATCC 700338]
 gi|304424703|gb|EFM27839.1| phage integrase family site-specific recombinase [Streptococcus
           bovis ATCC 700338]
          Length = 385

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 61/371 (16%), Positives = 118/371 (31%), Gaps = 51/371 (13%)

Query: 11  VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
           V   R   GK   YF+ G   R       E   +  Y    TG   +       R+    
Sbjct: 19  VRIYRVIDGKRHDYFKSGFKTR---REAKEHEAMI-YHKKSTGELSEL-LRAPERRFEGV 73

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
            +     Y+ +    + +V +   F  +   I+   G+    KIT    +  +  +  T 
Sbjct: 74  FEEWFRTYQDTVE-RTTSVRTDDIFRLH---ILPTLGNIAISKITPWQCQEFITEKGKTF 129

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR-KTEGIRPWTKEDMQQFKS--FWS 187
            +  Q  +    +F +AV+ + +A NP   V  PKR + +    +  +++ +F +     
Sbjct: 130 RNIKQIKSYASQVFSFAVKMKLIAENPMRDVTLPKREQKQSDNFFNVDELHEFLAIVKAE 189

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK-----TGTII--------- 233
           E  +    F  L YSGLR  +        +  +   +   K      G  +         
Sbjct: 190 EPYKNYALFRLLAYSGLRKGELYSLRWSDMNFDKQILSVTKNLGRIKGKAVEKSTKNRFS 249

Query: 234 --TVELPDG----FMKLLAMTPIGKETF-------------FINNDKQ--KMNATQFSIW 272
              + L         +    +   K                F++ D +   +     +  
Sbjct: 250 VRQIPLDAETTAILREWKQQSKKEKGQLSVTPLIDNDYMFTFVDRDGKIQPLYQDYINSI 309

Query: 273 FKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIR 330
            K    K  + K + HG R   AT+  + G          G  +     +TY+   +   
Sbjct: 310 LKRIINKHNLKKITPHGFRHTHATLMIEVGVDPVNAAKRLGHASSQMTLDTYSHATEAG- 368

Query: 331 LGIKNSRRISS 341
            G +  ++ + 
Sbjct: 369 -GEQTIKKFAD 378


>gi|265756275|ref|ZP_06090604.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_33FAA]
 gi|263233866|gb|EEZ19475.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_33FAA]
          Length = 401

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 48/296 (16%), Positives = 100/296 (33%), Gaps = 31/296 (10%)

Query: 77  EYRKSAHWGSLAV--NSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
            Y     + SL    +++ ++ +    I+       +  I  K + S  +          
Sbjct: 109 RYY--DEYISLKDKKSTKDNYINTRKLIVEFDDAPTFETIDRKWLTSFNQFLVDKGYMTN 166

Query: 135 QF---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
                L ++R +F +A+ +E   + P    +  KR+    R  T ++++  K++  E   
Sbjct: 167 YIGTHLKNIRAVFNYAIDEEVTTLYPFRKFK-IKREQTRKRSLTIDELKLLKNYPCEEYL 225

Query: 192 P--RLAFEFLLYS-GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248
              R  F  + Y  G+   D       +L N        KTG + ++++      +L   
Sbjct: 226 EFYRDIFMLIFYLIGINLEDLLFLTKDNLMNGRIEYYRHKTGKLFSIKVEPEAQSILD-- 283

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAG----------------VNKSAHGVRKF 292
               + + +N    + N T F+        + G                   S +  R  
Sbjct: 284 KYKGDRYLLNIMDNRSNYTSFTTSIDRALKQIGEVSILKRGKKIRNPLFPKLSTYWARHS 343

Query: 293 SATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVVDSDD 347
            AT++A+       + A  G +        Y K  D+ ++   N R I  +   + 
Sbjct: 344 WATLAAELDIPKETISAGLGHEIGSDVTSIYIK-FDQKKVDDANRRVIDYLFGKEK 398


>gi|221202028|ref|ZP_03575064.1| phage integrase family protein [Burkholderia multivorans CGD2M]
 gi|221204841|ref|ZP_03577858.1| phage integrase family protein [Burkholderia multivorans CGD2]
 gi|221175698|gb|EEE08128.1| phage integrase family protein [Burkholderia multivorans CGD2]
 gi|221178111|gb|EEE10522.1| phage integrase family protein [Burkholderia multivorans CGD2M]
          Length = 339

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 49/329 (14%), Positives = 108/329 (32%), Gaps = 26/329 (7%)

Query: 16  TRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75
            R GK     RK      R            +   +     +  +++    + TT+  L+
Sbjct: 6   KRDGKWQCQVRKTGFP-SRTRTFTSRADATEWGRMVEAEMDRGLFVSRDEAERTTIADLL 64

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSA 133
             Y +       + +S     +   ++ ++ GD+    +T+ H+ +  ++R  + +P + 
Sbjct: 65  DRYIREVSPTKRSGSSDKGRSA---KLKKQLGDYKLTALTSSHLVAYRDARLKEVSPQTV 121

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCL--SVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           I  L  +      A  +E+  + P     V +P++     R    +++Q           
Sbjct: 122 IHELNLLNRALTLA-TREWGIVLPAGIPKVIKPRKPQGRDRRLHPDEIQAIIDATESPDL 180

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLLAMTP 249
            R      + +G+R S+      +H+        +   KT T  TV L      +L    
Sbjct: 181 -RDFIRLAVATGMRRSELASLRWEHINLERRTAHLPLTKTDTPRTVPLSSVAAAVLQERK 239

Query: 250 IGKETF--------------FINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSAT 295
               T                     + +  +   +  +    +  V    H +R  + +
Sbjct: 240 DAGCTVPFAVTPNSLTRAFRRAVRRARGLYESTCRVLERPADPQWLVGIRLHDLRHEATS 299

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTK 324
              + G    E+ +  G KT+   + YT 
Sbjct: 300 RFFELGLQTLEVASITGHKTLSMLKRYTH 328


>gi|218704195|ref|YP_002411714.1| Integrase from bacteriophage origin [Escherichia coli UMN026]
 gi|218431292|emb|CAR12170.1| Integrase from bacteriophage origin [Escherichia coli UMN026]
          Length = 351

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 44/280 (15%), Positives = 79/280 (28%), Gaps = 34/280 (12%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
           K   TL  LI+ +        +A+ +    +          G     +   +   +    
Sbjct: 60  KDKRTLIDLITMWY---ERHGVALRNGKKRKDAMTWAAECMGFPLATEFNAQLFTAYRAK 116

Query: 126 R------------KHTPSSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIR 172
           R            K +P +          +F    R   + A NP  +V + +     + 
Sbjct: 117 RLEGHYARTNRVSKVSPKTMNLEHAYFLAMFNELKRIGEWSAPNPLENVRQYRTDETEMA 176

Query: 173 PWTKEDMQQFKSFWSEG--SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
             T E++ +          S   L  +  L +G R +++       +     +    K  
Sbjct: 177 FLTAEEIDRLLLECKRSKVSYLELVVKICLATGARWNEAATLKSSQIAGGKVTFIKTKGK 236

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA---- 286
              T+ L D     LA  P  K   F                F++   +AG+   A    
Sbjct: 237 RNRTIPLDDEL---LAELPETKGALF---------PKPCYNAFRSALERAGIELPAGQLT 284

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           H +R   A+     G     L    G   +     Y   A
Sbjct: 285 HVLRHTFASHFMMNGGNILVLQKILGHADITMTMRYAHFA 324


>gi|153810889|ref|ZP_01963557.1| hypothetical protein RUMOBE_01273 [Ruminococcus obeum ATCC 29174]
 gi|149833285|gb|EDM88367.1| hypothetical protein RUMOBE_01273 [Ruminococcus obeum ATCC 29174]
          Length = 280

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 34/236 (14%), Positives = 76/236 (32%), Gaps = 33/236 (13%)

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----- 188
            + ++++R  + +  ++E +  NP + ++ PK   + I     +++     +        
Sbjct: 42  KRKISALRSFYAYYYKREMIHTNPTVLIDVPKIHEKSIIRLDTDEVAMLLDYIEHCGDTL 101

Query: 189 -----------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITV 235
                        +       LL +G+R S+     ++ +   NN   + T+K G  + V
Sbjct: 102 TGQKRVFYEKTKERDLAIVTLLLGTGIRVSECVGLDIEDVDFKNNGIKV-TRKGGNEMVV 160

Query: 236 ELPDGFMKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284
                  K L                +   F +  +++M         K  + +    K 
Sbjct: 161 YFGPEVEKALKRYLEVREGITPLAGHEHALFYSAQRKRMGVQAVENMVKKYSRQITTTKK 220

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGAD-RIRLGIKNSR 337
            + H +R    T         + +    G K V+   + Y    D R R      +
Sbjct: 221 ITPHKLRSTYGTALYQETGDIYLVADVLGHKDVNTTKKHYAALDDARRRQAATAVK 276


>gi|148553081|ref|YP_001260663.1| phage integrase family protein [Sphingomonas wittichii RW1]
 gi|148498271|gb|ABQ66525.1| phage integrase family protein [Sphingomonas wittichii RW1]
          Length = 451

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 49/350 (14%), Positives = 92/350 (26%), Gaps = 51/350 (14%)

Query: 25  FRKGHGRR---IRLPYPHESTFIPAYMSALTGSTPKREYINSPR---KKPTTLKWLISEY 78
           +R G   R   I L               L G   + +     R    +  T+K L + Y
Sbjct: 45  YRSGGRSRRYTIGLHGVWTPETARQEAKILFGRIAQGDDPAEERQLNHRAITIKELCALY 104

Query: 79  RKSAHW--------GSLAVNSRI-SFESYFDQIIRKSGDFDYRKITTKHI-RSGVESRKH 128
                               + +         I+   G    + +T   + R   +    
Sbjct: 105 VADLEAGLILGKGGRPKKPGTIVTDMGRIRRHIVPLIGRRKVKDLTKADVNRVLKDIMAG 164

Query: 129 TPS-------------------SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
             +                   +A + +  +  +  +A+    +  NP   + +PK    
Sbjct: 165 KTAVVAKTKKLRGKAIVRGGVGTATRTIGLLGGILTYAIEAGIIDTNPAHGIRKPKDNVR 224

Query: 170 GIRPWTKEDM----QQFKSFWSEGSQPRLA--FEFLLYSGLRCSDSCRAGV--QHLQNNI 221
             R  T+ +     Q  +    EG    +A     +  +G R  +          +  + 
Sbjct: 225 DRR-LTESEYRLLGQIIRDAKEEGRYAVVAEITRVIALTGCRRGEIINLARTEADIGASC 283

Query: 222 FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS----IWFKAKA 277
             +   K G  +          L A       T+      +      F      W K   
Sbjct: 284 LRLDDTKEGKSVRPVGLPAVEALEARLDATTGTYLFPGQGE---DNAFGCFPTHWKKLIE 340

Query: 278 TKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
                + + H +R   A+I+ D G T   + A  G         Y    D
Sbjct: 341 NTPLEDVTPHVLRHSFASIANDLGFTEVTIAALLGHAKGSVTGKYIHTLD 390


>gi|62860876|gb|AAY16469.1| probable phage family integrase/recombinase protein
           [Bifidobacterium breve]
          Length = 274

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 38/256 (14%), Positives = 78/256 (30%), Gaps = 12/256 (4%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
            +  I+++  S   G+ A ++  +       I +  G      +    + +    R+  P
Sbjct: 11  WRDYIAQWLDSLKAGAYAASTINTRRCQLTAISQALGGSPL-DVEASDLVAYFAGREWKP 69

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
            +      +    F W  +  ++  +P  ++   +R     RP    D+   K+      
Sbjct: 70  ETRKGARNACAGFFGWMFQTGHIDTDPSRALPSIRRPHPHPRP--CPDIVILKALSKATD 127

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQN---NIFSIKTQKTGTIITVELPDGFMKLLAM 247
           + RL       +GLR  +  +     L         +   K      V + D     +  
Sbjct: 128 RERLMLRLGAEAGLRRFEIAKISDADLVRDLMGWSLMVIGKGDVQRMVPISDDLAGEIRA 187

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHEL 307
              G    F       + A+                 SAH +R   AT + +A      +
Sbjct: 188 HGPG--YIFPGRWGSHVEASYVGKHLSRLLD----GWSAHSLRHRYATRTWEATHGLLPV 241

Query: 308 MATYGWKTVDQAETYT 323
               G  +V+  + Y 
Sbjct: 242 SRLLGHASVETTQRYV 257


>gi|103488014|ref|YP_617575.1| phage integrase [Sphingopyxis alaskensis RB2256]
 gi|98978091|gb|ABF54242.1| phage integrase [Sphingopyxis alaskensis RB2256]
          Length = 463

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 51/347 (14%), Positives = 101/347 (29%), Gaps = 49/347 (14%)

Query: 50  ALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGS--------LAVNSRI-SFESYFD 100
           A            + ++    +  LI  Y K   +          +   ++  +      
Sbjct: 85  AKATVGEDPAKARNDKRGEMRISELIDLYEKQGCYIQRGKRQGVPMKPRTKQYTLARLRH 144

Query: 101 QIIRKSGDFDYRKITTKHIRSGVES---------RKHTPS----------SAIQFLTSMR 141
            ++   G+    ++ T  I                K  P           +A +    + 
Sbjct: 145 HVVPLLGNRRVTEVNTGDIERFFRDVETGKTARDDKIGPRKRIVVRGGEGAARKVFRDLS 204

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KSFWSEGSQPRLAFE 197
            +F +A R E V  NPC +    K      R  T E++++F    +    +G+  R A +
Sbjct: 205 AVFSFARRSEIVTRNPCETAAVKKTDNHKERFLTLEEVKRFGEGLRELEKDGT-NRKALD 263

Query: 198 FL---LYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252
            +   + +G R  +      Q    ++        KTG  +          +  +   G 
Sbjct: 264 IMRLWMLTGCRREEIASLKWQEVDFEHGCLRFGDSKTGKAVRPIGAAAIAVIKTIEQTGD 323

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATY 311
             F     +       +   +K    KA +   + H +R    + +  +G       A  
Sbjct: 324 SEFVFPAGEGDSYFRGYKTPWKKVVEKARLPGVTPHTLRHTMGSTAISSGEAMAFTGAIL 383

Query: 312 GWKTVDQAETYT--------KGADR--IRLGIKNSRRISSVVDSDDP 348
           G         Y         + ADR   R+    +      VD+  P
Sbjct: 384 GHTNPRSTAIYAHVQHSPARRAADRVAERIAAALAGMSDLEVDAPAP 430


>gi|312899212|ref|ZP_07758550.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX0470]
 gi|311293646|gb|EFQ72202.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX0470]
          Length = 384

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 70/387 (18%), Positives = 129/387 (33%), Gaps = 66/387 (17%)

Query: 14  ERTRHGKIIYYFRK--GHGRRI-RLPYPHESTFIPAYMS--ALTGSTPKREYINSPRKKP 68
            + ++G+  +YF+   G      +  Y  +  F     +  AL     + +    P    
Sbjct: 7   YQKKNGEKAWYFKTYLGTDPLTGKKKYTTKRGFRTQKEAKIALARLEMEIQKNGIPSSTN 66

Query: 69  TTLK-----WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
            T +     WL   Y+ +    S +  + I F  +   I+   G  +  KI+T + +  V
Sbjct: 67  ITFQEVAFMWL-ENYKNTVKESSYS-RTEIIFRKH---ILPSFGKIEISKISTAYCQKIV 121

Query: 124 ESRKHTPSSAIQ--FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT-----EGIRPWTK 176
            +     SS     F+  +  +FK+A+       NP ++V  PK +      + I+ +TK
Sbjct: 122 NTWHSKGSSKQYPLFINYINQVFKFAINIGVTNQNPVINVIVPKNQDIITSEKKIKFYTK 181

Query: 177 EDMQQFKSFWS------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----- 225
           + +Q F              +    F  L +SG R  +        L      ++     
Sbjct: 182 DQLQIFLKSIEQSESTYITIRDYTLFRLLAFSGCRIGELLALTWDDLNIKTGELQINKTI 241

Query: 226 ----------TQKTGTIITVELPDG----------------FMKLLAMTPIGKETFFINN 259
                     T KT       + D                  +KL    P      F N 
Sbjct: 242 AKSDHYYVSNTPKTKKSNRTLILDAKTITILKKWKLEQKKYLLKLGYTQPSR---IFTNE 298

Query: 260 DKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           + +       +  +     KA + N   HG R   A++   AGA   E+    G   +  
Sbjct: 299 ENEFTINQAITDRYNIYRKKANLPNIGLHGFRHTHASLLYYAGADHKEVQERLGHANIKT 358

Query: 319 A-ETYTKGADRIRLGIKNSRRISSVVD 344
             +TYT   +  +   K + ++S  + 
Sbjct: 359 TLDTYTHLTNDGK--EKTTEKLSKYIG 383


>gi|194303106|ref|YP_002014521.1| gp53 [Mycobacterium phage Kostya]
 gi|194153154|gb|ACF34220.1| gp53 [Mycobacterium phage Kostya]
          Length = 279

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 44/271 (16%), Positives = 100/271 (36%), Gaps = 24/271 (8%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSSAIQFLTSMRVLFKW 146
           +  +  ++    +  +    + +   +    + + V S     P++    LT+++   +W
Sbjct: 9   SAETIRAYGGSVEGYLNFCVEGELAPLEKASLLAWVNSMASLQPATVHLRLTAVKQFMRW 68

Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYS 202
              +E V ++  L V  PK   + ++  +   +Q   +  +  +    + +        +
Sbjct: 69  VADEEGVNVDGLLVVRPPKLDQKVVKHLSDRAVQALVATCAGNTFRDRRDKALIVLFTET 128

Query: 203 GLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDG-------FMKLLAMTPIGKE 253
           G+R ++     V+ +   +   +++  K      V+           +++       G E
Sbjct: 129 GIRAAEMLALDVEDVSLVDCQLTVRRGKGAKGRRVKYSPMCAATIDKYLRARRRAGHGSE 188

Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYG 312
                    +++ T      K +A  AGV     H +R  SA     AG +   LMA  G
Sbjct: 189 GPLWIGLGGRLSYTGMKSSLKRRADDAGVPGFHPHRLRHTSAVRWLKAGGSEAGLMAQAG 248

Query: 313 WKTVDQAETYTKGA---------DRIRLGIK 334
           W++  Q + Y K A         DR+ L ++
Sbjct: 249 WQSRRQIDRYIKSAAEELASDEFDRLNLSVE 279


>gi|58583855|ref|YP_202871.1| site-specific recombinase [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84625654|ref|YP_453026.1| site-specific recombinase IntIA [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188574819|ref|YP_001911748.1| site-specific recombinase [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|58428449|gb|AAW77486.1| site-specific recombinase [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84369594|dbj|BAE70752.1| site-specific recombinase IntIA [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188519271|gb|ACD57216.1| site-specific recombinase [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 291

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 47/291 (16%), Positives = 88/291 (30%), Gaps = 61/291 (20%)

Query: 106 SGDFDYRKITTKHIRSGVESRKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINP-CLSVER 163
            G F   +I  +   + + +R   +  +  Q L ++  L++  +  E     P   ++ R
Sbjct: 5   WGVFRGDQIEVEAFLTELATRGQVSAGTQNQALAALLFLYREVLGVEL----PWMENLVR 60

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNI 221
            KR        + E++ +  +        RL    L  SG+R  +  R  ++ +      
Sbjct: 61  AKRPRRIPVVLSAEEVARLLTMLEGSC--RLMAGLLYGSGMRLLECLRLRIKDVDVVRGE 118

Query: 222 FSIKTQKTGTIITVELPDGFMKLLA----------------------------------- 246
             ++  K G    V LP      L                                    
Sbjct: 119 IVVRVGKGGKDRWVPLPHSLRGELMQQRERALLLHAADLAEGAGRAFLPHALARKYPNAD 178

Query: 247 ----------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSA 294
                       P   +       +  ++        +A   +AG+ K A  H +R   A
Sbjct: 179 VEHGWQYLFPAAPRSVDPRSGRVGRHHVSEKVLQRAVQAARQQAGLAKPATCHTLRHSFA 238

Query: 295 TISADAGATAHELMATYGWKTVDQAETYT----KGADRIRLGIKNSRRISS 341
           T   +AG     +    G K V   + YT    +GA  +R  +    R+  
Sbjct: 239 THLLEAGHDIRTVQELLGHKDVATTQIYTHVLGRGASVVRSPLDGLSRLGG 289


>gi|331701911|ref|YP_004398870.1| integrase family protein [Lactobacillus buchneri NRRL B-30929]
 gi|329129254|gb|AEB73807.1| integrase family protein [Lactobacillus buchneri NRRL B-30929]
          Length = 377

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 43/371 (11%), Positives = 109/371 (29%), Gaps = 41/371 (11%)

Query: 17  RHGK---IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
           +HG    + YY+   +G+          T   A + A          ++   K P     
Sbjct: 6   KHGHGYQVRYYYYDANGQEHEKTKSGFRTKSAAKLFASQLEIDIHNGLDLVPKDP-KFAD 64

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS-- 131
               +  +     +   ++  ++     +    GD   + I     ++ +    H+ +  
Sbjct: 65  YFDYFYHTYKEPKIENQTKNRYKITSRVLHNYFGDVTLKSIDRPQYQAFINFYGHSHAKD 124

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP--WTKEDMQQFKSFWSEG 189
           +  +  + +R   + A+  + +  +    V     K+           ++++  ++    
Sbjct: 125 TVYKVNSLIRATVQNAILDDLIHKDFTQRVSLIYDKSRDKHVEYLNVAEIKRLIAYLENH 184

Query: 190 SQPRL----AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT---------------G 230
                         + +G R  +        +  N  +I   K+               G
Sbjct: 185 LNYHFTSTFMILTAVLTGARLGEIQALTWNDVNFNFKTISITKSWNSSEGGGFKDTKTAG 244

Query: 231 TIITVELPDGFMKLLAMTPI--GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--- 285
           +   + + D  +K L +       E  F+N  K   +++  +   ++     G+ K    
Sbjct: 245 SNRIIAVNDELLKSLKILKDHNNGELIFVNQYKSIPSSSAVNKKLRSILKDLGIQKQGFH 304

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYT--------KGADRIRLGIKNS 336
            H +R          G   + +    G   V    + Y+        K   +IR  + N 
Sbjct: 305 FHSLRHSHVAYLLSRGIDIYIISKRLGHADVSTTTKIYSYLMDEYKAKNDQQIREELDNL 364

Query: 337 RRISSVVDSDD 347
                 +  + 
Sbjct: 365 SSHDETIPIER 375


>gi|299147615|ref|ZP_07040679.1| transposase [Bacteroides sp. 3_1_23]
 gi|298514402|gb|EFI38287.1| transposase [Bacteroides sp. 3_1_23]
          Length = 443

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 48/279 (17%), Positives = 86/279 (30%), Gaps = 39/279 (13%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRKITT---KHIRSGVESRKHTPSSAIQFLTSMRV 142
            +A   + +  S    I R   D    ++ +   +     + S   + ++   +L ++R 
Sbjct: 169 GMAAAYKSTRSSLAKFISR--PDVRMSEVDSAFVRRYEDFLYSNGSSGNTVSYYLRNLRS 226

Query: 143 LFKWAVRQEY----------VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
           L+  AV   Y              P  +V+R           ++ DMQ       E    
Sbjct: 227 LYNQAVADGYHPRGEYPFAKAQTRPAKTVKR---------ALSRTDMQNLADLNLENEPE 277

Query: 193 R-LAFEFLLYS----GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
              A +  L+S    G+   D        + N + +    K+  +I + +      L+  
Sbjct: 278 LEFARDLYLFSFYAQGMAFVDIVLLRKSDICNGVLTYSRHKSKQLIRIAVTPQMQGLMDK 337

Query: 248 TPIGKETFFIN-----NDKQKMNATQFSIW---FKAKATKAGVN--KSAHGVRKFSATIS 297
                E  F           K             K  A  A +    + +  R   AT++
Sbjct: 338 YKTENEYLFPIISGEYASGYKQYRLALGRINRHLKKIAVAADIKVALTTYTARHTWATLA 397

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
            D GA    + A  G  + +    Y K  D   L   NS
Sbjct: 398 RDYGAPISVISAGLGHTSEEMTRVYLKDFDVSMLNQVNS 436


>gi|167589040|ref|ZP_02381428.1| prophage DLP12 integrase [Burkholderia ubonensis Bu]
          Length = 358

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 41/257 (15%), Positives = 80/257 (31%), Gaps = 33/257 (12%)

Query: 96  ESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS------------------SAIQFL 137
           +++   + R         I    I +   +++  P                   +  + L
Sbjct: 83  KTHLRWLDRHLAGVALADIDRSRIDAIALAKRREPRVVRTRHGVVETGRSVSDGTVRRVL 142

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE 197
             ++ +   AV  E++   P    +R K  ++ IR  T  + ++  +           F 
Sbjct: 143 GVLKAVLNAAVEWEWLDRAPVT--KRAKVVSKRIRWLTPAESERLLAELPAHLADMARF- 199

Query: 198 FLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDG------FMKLLAM 247
             L +GLR S+        +              K    ITV L D         +    
Sbjct: 200 -SLETGLRRSNVTGLQWSQVDLARRVAWIHPDQAKAKKAITVPLSDTAIAVLLRQRATKR 258

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHEL 307
            P   ++ F+    + +  T  + W KA       +   H +R   A+     G     L
Sbjct: 259 APGFADSVFV-YQGKPVYQTTTAAWRKALERARIRDFRWHDLRHTWASWHVQRGTPLQVL 317

Query: 308 MATYGWKTVDQAETYTK 324
               GW+T++  + Y  
Sbjct: 318 KELGGWETMEMVQRYAH 334


>gi|325268702|ref|ZP_08135331.1| integrase [Prevotella multiformis DSM 16608]
 gi|324988946|gb|EGC20900.1| integrase [Prevotella multiformis DSM 16608]
          Length = 395

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 49/311 (15%), Positives = 105/311 (33%), Gaps = 30/311 (9%)

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSR--ISFESYFDQIIRKSG--DFDYRK 113
           + ++      PTTL  L  E          +   +   S+    +  +   G  D     
Sbjct: 91  KNHLQGVGSNPTTLLALSREKLSIVQSTKASGTYQSCRSYHRQLESFVESKGVADIPLTT 150

Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSM----RVLFKWAVRQEYVAINPCLSVERPKRKTE 169
           +T +         K    +      ++    R++++ AV Q+ +  NP    +  + + +
Sbjct: 151 LTMEFFDDYRIHFKRKGYALSSTKQNLFWLSRLMYR-AVSQQTIRYNPFEDAKYERVERK 209

Query: 170 GIRPWTKEDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK- 225
            IR  +K D+    +   +  Q    R  F F +++G   +D  +     ++ N   I+ 
Sbjct: 210 -IRCLSKTDIACLLAMPLQNEQAEFVRRLFLFSVFTGQAFADVSKLRYCDIETNNTGIRY 268

Query: 226 ----TQKTGTIITVELPDGFMKLLAMTP----IGKETFFINNDKQKMNATQFSIWFKAKA 277
                +KT       L     ++L++ P          F  +    M+  Q  +  K   
Sbjct: 269 IRQYRKKTDVESITPLHPIAEQILSLYPLKDRKEDSPIFATS----MSRIQIGMHLKTIG 324

Query: 278 TKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335
              G+    S H  R     ++ +AG     +    G  ++   + Y +  D      K+
Sbjct: 325 LACGIRQSLSFHVDRHSFGALTLEAGIPIESIAKMMGHASIASTQIYAQITDNK--ISKD 382

Query: 336 SRRISSVVDSD 346
             R+     ++
Sbjct: 383 MDRLIEKCGNE 393


>gi|253731456|ref|ZP_04865621.1| integrase [Staphylococcus aureus subsp. aureus USA300_TCH959]
 gi|253724699|gb|EES93428.1| integrase [Staphylococcus aureus subsp. aureus USA300_TCH959]
          Length = 349

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 47/313 (15%), Positives = 99/313 (31%), Gaps = 39/313 (12%)

Query: 48  MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFES-YFDQIIRKS 106
             A +        +N       T  ++   Y +++    L   ++   ++ Y      K 
Sbjct: 37  REAKSAEAIFLNDVNEGYSDSKTFDYVFHHYLENS---DLRPKTKRRKQNEYHKHFKAKF 93

Query: 107 GDFDYRKITT---KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163
           G     KIT    +  R  +     + +SA    +  +V+  +A +   +  +P +S++ 
Sbjct: 94  GHIKMNKITQNQCQEFRKYLIENVASTNSARTIWSGFKVVINYAKKYFGLRTDPTISIKP 153

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH------- 216
             R     +   +E+ ++ +    E    R  F  + Y+GLR  ++              
Sbjct: 154 IPRVKPKPKFMMREEFEE-RIKDIEEQDYRELFTLMFYTGLRIGEAMALVWTDYNKYKKE 212

Query: 217 --------LQNNIFSIKTQKTGTIITVELPD----------GFMKLLAMTPIGKETFFIN 258
                   + N     + +   +   V LP              K L      +  F   
Sbjct: 213 ISINKTMDISNRTIYPRPKTDSSEDIVPLPKFINTMLTERHQREKELNKYFDERSYFIF- 271

Query: 259 NDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
                M    +S   K    KA  + + H +R   A+  A+ G     L +      + +
Sbjct: 272 ---GGMAPKHYSHVQKKF-QKAFPHYNIHALRHSYASYLANNGVDIFVLQSLMRHAQITE 327

Query: 319 A-ETYTKGADRIR 330
              TY+    + +
Sbjct: 328 TMGTYSHLYTQKK 340


>gi|315650043|ref|ZP_07903123.1| phage integrase family site-specific recombinase [Eubacterium
           saburreum DSM 3986]
 gi|315487813|gb|EFU78116.1| phage integrase family site-specific recombinase [Eubacterium
           saburreum DSM 3986]
          Length = 371

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 61/334 (18%), Positives = 115/334 (34%), Gaps = 44/334 (13%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK--PTTLKWLISEYRKSAHWG 85
           G   RI L     S  +   ++ L     KREY+ S         L+WL   Y+      
Sbjct: 27  GSKHRINLISKKSSADLEKKVNELKDKVYKREYVTSSDISLYDYALEWL-DTYK-----V 80

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFK 145
           + + N+ + +++  D+ I    D   + +T   ++S +  R   P +  Q   +++ + K
Sbjct: 81  NRSRNTYLMYKNIIDKHIIDLSDIPLQHLTHARLQSLINERVDRPRTCQQLALTLKQILK 140

Query: 146 WAVRQEYVAINPC----LSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201
            A + + + IN        +E P  K++  R  T+ +++  K+    G + +     L  
Sbjct: 141 SASKAQLIPINVAHTLVDDLELPSYKSKEKRALTELEIRAIKTADFTG-REKCFIYLLYG 199

Query: 202 SGLRCSDSCRAGVQHL---------------QNNIFSIKTQKT-GTIITVELPDGFMKLL 245
            GLR  ++       +               + N   IK  KT     TV +P      L
Sbjct: 200 CGLRRGEALALTKYDISLENAEISITKSMAFEVNRSYIKETKTVRGQRTVPMPGYLKDFL 259

Query: 246 AMTPIGKETFFINN-DKQKMNATQFSIWF----KAKATKAG-------VNK-SAHGVRKF 292
                  + + I   D  +M  + F   +    K     AG       ++  + H  R  
Sbjct: 260 KDYIKTVDNYLITKVDGSEMTLSSFEKMWEQIIKKMNIAAGGTDTIRIIHGLTPHIFRHN 319

Query: 293 SATIS-ADAGA-TAHELMATYGWKTVDQAETYTK 324
             T       A +   +    G       + Y+ 
Sbjct: 320 YCTRLCYQVPAISTKMIAKLLGDTEKMVIDVYSH 353


>gi|54296054|ref|YP_122423.1| hypothetical protein lpp0072 [Legionella pneumophila str. Paris]
 gi|53749839|emb|CAH11220.1| hypothetical protein lpp0072 [Legionella pneumophila str. Paris]
          Length = 406

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 53/298 (17%), Positives = 108/298 (36%), Gaps = 20/298 (6%)

Query: 44  IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII 103
           + A      G  P         K   T+K L   +        L        +     II
Sbjct: 69  LDAEHLKEQGINPIEYAKQQQAKSDNTVKKLAFSWYTQYVEKHLK-RPLTVKKQIDGDII 127

Query: 104 RKSGDFDYRKITTKHIRSGVESRKHTPSS--AIQFLTSMRVLFKWAVRQEYVAINPCLSV 161
              GD    ++ TK I   ++      +S  A + L+S++ +F +AV +  ++ NP  ++
Sbjct: 128 NLLGDRVLDELETKDITEALDKIVKRGASVHANRVLSSLKQMFGYAVSRGTMSTNPASNI 187

Query: 162 ---ERPKRKTEGIRPWTKEDMQQFKSFWS-----EGSQPRLAFEFLLYSGLRCSDSCRAG 213
              +    +    R  + ++++    F          Q R+A + +L +G+R ++   A 
Sbjct: 188 RARDIGGHEKPRERVLSLDEIKSLWLFLDSKDSQMAPQTRIAIKIILLTGVRTAELRLAQ 247

Query: 214 VQ--HLQNNIFSIKT--QKTGTIITVELPDGFMKLLAMTP-IGKETFFIN--NDKQKMNA 266
               +  +++++I     K   +  V L D   +LL     I +  + +   + +Q +  
Sbjct: 248 WSEINFDDSLWTIPAMHSKASIVHKVHLSDLTKQLLQQLKSISRSDYVLTGADYRQPLTE 307

Query: 267 TQFSIWFKAKATKAGVN-KSAHGVRKFSATISADA-GATAHELMATYGWKTVDQAETY 322
                  K    + G+   +AH +R+  AT   +        +    G K      TY
Sbjct: 308 NALPRAIKRIQERLGIPEWTAHDLRRTFATQLGETLQVDPVVIEKCLGHKMPRIMATY 365


>gi|265757008|ref|ZP_06090870.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|263233507|gb|EEZ19136.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 420

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/274 (13%), Positives = 96/274 (35%), Gaps = 36/274 (13%)

Query: 86  SLAVNSRISFESYFDQIIR------KSGDFDYRKITTKHIRSGVESRKHTP----SSAIQ 135
             +  +   +++   ++        +  D  + +++   I++     K       ++ ++
Sbjct: 137 DYSPVTINRYKNVLRKLETFVPRFYEKDDITFHELSPDFIKAFDVFLKTEAGLCRNTIVR 196

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WSEGSQP 192
           ++  ++ +   A+ +E++  +P    +  + +T+     T  ++Q   +           
Sbjct: 197 YMKCLKKITNMAIAKEWMRKDPFYGYKMEQDETD-PVFLTNNELQAIMNRNFDIPRLELV 255

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNN-----IFSI------KTQKTGTIITVELPDGF 241
           +  F F  ++GL  +D      +HL+ +               + +K+ +I  V L    
Sbjct: 256 KDIFLFACFTGLAFADVSTLRPEHLEQDNNGDWWIRKGRVKLERRRKSSSIANVPLLPVP 315

Query: 242 MKLLAMTPIGKETFFINNDKQKMNA---TQFSIWFKAKATKAGVNK--SAHGVRKFSATI 296
           + +L      +           +      + + + K  A   G+ K  + H  R   AT 
Sbjct: 316 LAILKKY---ESHPICLKQGTCLPVVCNQKANSYLKEIADFCGIKKNLTTHAARHTFATT 372

Query: 297 --SADAGATAHELMATYGWKTVDQAETYTKGADR 328
              A+      E+ A  G  +    + Y +  DR
Sbjct: 373 VTLANN-VPLQEVSAMLGHASTRMTQHYARVMDR 405


>gi|187932470|ref|YP_001884285.1| DNA integration/recombination/invertion protein [Clostridium
           botulinum B str. Eklund 17B]
 gi|187720623|gb|ACD21844.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum B str. Eklund 17B]
          Length = 384

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 43/307 (14%), Positives = 93/307 (30%), Gaps = 52/307 (16%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRK----ITTKHIRSGVES 125
            K  I+++       ++++N++  +    +  ++   G++   +    I        +  
Sbjct: 64  FKDYINKWFNEYKVLNVSINTKNDYIYRINAHVVPMIGNYKLSELSTSIIQDFYNKLISE 123

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +   P SA +    +    K+A + + +   P   +E+ K     I  WTK+++  F   
Sbjct: 124 KGMKPVSAKKVYDIVNGCLKYAKKSKLIYDLPT-DIEKQKLVKPEIEFWTKKEIDFFLDK 182

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ------------------ 227
            ++           + +GLR  + C      +      I+                    
Sbjct: 183 IND-LYLYSPVFLDVLTGLRVGELCGLRWCDVNLESGYIEVNSQVIQDRINKELIFSSIL 241

Query: 228 KTGTIIT-VELPDGFMKLLAMTPIGKETF-----FINNDK---QKMNATQ-FSIWFKAKA 277
           KT T    + +P   +  L                ++ +       N +  F+       
Sbjct: 242 KTSTSHRNISIPPVLIDFLKAMKEDNNALENDFVILSREGLMCNPRNLSMNFTKTVAKYK 301

Query: 278 T-KAGVNK---------------SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-E 320
                + K               S HG+R   AT+    G     +    G + +     
Sbjct: 302 KSIDDIEKENKEVPKDYMQLKQISFHGLRHTHATLLIFNGENIKVVSDRLGHRDISITLN 361

Query: 321 TYTKGAD 327
           TYT   D
Sbjct: 362 TYTHIMD 368


>gi|167767086|ref|ZP_02439139.1| hypothetical protein CLOSS21_01604 [Clostridium sp. SS2/1]
 gi|167711061|gb|EDS21640.1| hypothetical protein CLOSS21_01604 [Clostridium sp. SS2/1]
 gi|291559577|emb|CBL38377.1| Site-specific recombinase XerD [butyrate-producing bacterium SSC/2]
          Length = 328

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 34/248 (13%), Positives = 79/248 (31%), Gaps = 14/248 (5%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----SRKHTPSSAIQFLTSMRVL 143
           +  + I + +   Q++    +     I T+ +R  +      +K +  +           
Sbjct: 67  SEKTLIYYRNTIQQMLDSV-EKSVCSIGTEDLRDYLADYQAEKKSSKITIDNIRRIFSSF 125

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203
           F W   ++Y+  +P   + R K  +     +T E ++  +       +     + L  +G
Sbjct: 126 FAWLEDEDYIIKSPVRRIHRIKSGSTIKETYTDEQLETMRDNCG-NLRDLALIDILASTG 184

Query: 204 LRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDG----FMKLLAMTPIGKETFFIN 258
           +R  +      + +  +    I   K      V             L          F++
Sbjct: 185 MRVGELVLLNKEDISFDERECIVFGKGDKERMVYFDARTKIHLQNYLNSRVDTNNALFVS 244

Query: 259 --NDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKT 315
                 +M      +  +    +  ++K   H  R+  AT++ D G    +L    G + 
Sbjct: 245 LKAPYDRMKIGGIEVRLRELGKRLNIDKVHPHKFRRTLATVAIDKGMPIEQLQKLLGHQR 304

Query: 316 VDQAETYT 323
           +D    Y 
Sbjct: 305 IDTTLQYA 312


>gi|148978334|ref|ZP_01814839.1| Hypothetical bacteriophage integrase [Vibrionales bacterium SWAT-3]
 gi|145962493|gb|EDK27771.1| Hypothetical bacteriophage integrase [Vibrionales bacterium SWAT-3]
          Length = 342

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 38/244 (15%), Positives = 71/244 (29%), Gaps = 17/244 (6%)

Query: 90  NSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFK-WAV 148
            +  ++    D + R+ G+    KI    + +   +R     SA         L   + V
Sbjct: 76  RTASNYRKKLDLVCRELGNPPVNKINNAMVSNWQLNRMSKGQSANTVRRLTSCLSNVFTV 135

Query: 149 RQEYVAIN---PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLR 205
             E    N   P   +++P      +   T   +    S      +     +  L +G R
Sbjct: 136 LIETGDFNAPHPLKDLKQPAPNRSEMTYLTTYQIDALLSAVQSHPELSKIVDICLSTGSR 195

Query: 206 CSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN 265
             ++      +L          KTG   TV + +   K L            N      +
Sbjct: 196 WRETVTLKPMNLSPYRIRFTNTKTGKPRTVPISEELYKKLQ----------TNVSGNLFS 245

Query: 266 ATQFSIWFKAK-ATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
                  ++   + +  + K    H +R   A+     G     L    G  ++ Q   Y
Sbjct: 246 YDPQKELYEIMDSLEFNLPKGQKVHVLRHTFASHFIMNGGNILTLKEILGHASITQTMAY 305

Query: 323 TKGA 326
              A
Sbjct: 306 AHLA 309


>gi|319936245|ref|ZP_08010665.1| integrase [Coprobacillus sp. 29_1]
 gi|319808819|gb|EFW05352.1| integrase [Coprobacillus sp. 29_1]
          Length = 385

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 64/374 (17%), Positives = 107/374 (28%), Gaps = 59/374 (15%)

Query: 12  TKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
            K     G   Y +          P P      P+            E       K  T 
Sbjct: 15  IKYVDAFGNTKYVYAWRLTP--TDPTPKGKREKPSLRELEQQIRRDIEDGIDSTGKKMT- 71

Query: 72  KWLISEY-RKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRSGVESRKHT 129
             L   Y +++A   ++  +++   E     +   K G      I     +      K  
Sbjct: 72  --LCQLYAKQNAQRANVKKSTQKQREQLMRLLKEDKLGARSIDTIKPSDAKEWALRMKDK 129

Query: 130 P---SSAIQFLTSMRVLFKWAVRQEYVAINPC--LSVERPKRKTEGIRPWTKEDMQQFKS 184
               ++      S++  F  A++ + V  NP      E  +  T+     T+E  Q   S
Sbjct: 130 GFSYNTINNHKRSLKASFYIAIQDDCVRKNPFDFKLSEVLENDTKEKVALTEEQEQALLS 189

Query: 185 FWSEGSQPRLAFE---FLLYSGLRCSDSCRAGVQHLQ----------------NNIFSIK 225
           F    +     ++    LL +GLR S+ C   V  +                    + I+
Sbjct: 190 FIKTDNVYHKYYDDVLILLKTGLRISELCGLTVADIDFKNEVVVIDHQLLKSKEQGYYIE 249

Query: 226 TQKTGTIIT-VELPDG----FMKLLAMTPIGK--------ETFFINNDKQKMNATQFSIW 272
           T KT   I  V L       F +++     GK        +  FIN       A  ++  
Sbjct: 250 TPKTKNGIRQVPLSRETIQAFQRVIRKRTKGKLIEIDGYKDFLFINPKGNPKVAIDYNAL 309

Query: 273 FKAKATKAGVNK--------SAHGVRKFSATISADAGATAHELMATYGWKTVD------- 317
           F     K   +         + H +R    T  A       +L    G   +        
Sbjct: 310 FVRMVKKYNKHHEDNPLPHITPHTLRHTFCTRLAGRNMNPKDLQYIMGHSNISITMNWYA 369

Query: 318 QAETYTKGADRIRL 331
            A   T  ++  RL
Sbjct: 370 HASIDTAKSEVQRL 383


>gi|298388138|ref|ZP_06997681.1| tyrosine recombinase [Bacteroides sp. 1_1_14]
 gi|298259111|gb|EFI01992.1| tyrosine recombinase [Bacteroides sp. 1_1_14]
          Length = 320

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 48/286 (16%), Positives = 90/286 (31%), Gaps = 30/286 (10%)

Query: 28  GHGRRIRLPYPHESTFIPAY-------MSALTGSTPKREYINSPRKKPTTLKWLISEYRK 80
           G    +       + F   Y        SA+  + P++E    P             Y +
Sbjct: 47  GGRAYLPAEDFVLAEFFDRYVKMAFIDYSAIKETAPRKEEDKRPPLPEG--------YLE 98

Query: 81  SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG----VESRKHTPSSAIQF 136
                  + ++   + SYF    +         +T   I       +  +  +     Q 
Sbjct: 99  KLQQVRYSDHTVRVYTSYFRDFQQHFEGRKIETVTPGEINDYLLYLIHEKNISSCQQNQR 158

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196
           + +++  ++  + QE      C  V R KR+       +KE++++         +    F
Sbjct: 159 INAIKFYYEKVLGQERR----CYKVNRAKREKTLPDVLSKEEIKKILDATVTDLRFFCMF 214

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLL---AMTPIG 251
             L  +GLR S+        +  +     ++  K        L    MK L         
Sbjct: 215 SILYSAGLRISELLELKPGDINESRSLIRVRQGKGKKDRYTLLSKPLMKKLTEYNRLYKP 274

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSAT 295
           K   F +   +    +  S   KA A +AG+ K    H +R   AT
Sbjct: 275 KVWLFEHRPGEPFTESIVSKRLKAAAREAGITKRIYPHLLRHSFAT 320


>gi|260760651|ref|ZP_05872994.1| integrase/recombinase xerD [Brucella abortus bv. 2 str. 86/8/59]
 gi|260671083|gb|EEX57904.1| integrase/recombinase xerD [Brucella abortus bv. 2 str. 86/8/59]
          Length = 309

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 43/272 (15%), Positives = 92/272 (33%), Gaps = 32/272 (11%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHT---PSSAIQFLTS 139
              A N+  S+    +    +      +  +  T HIR  +++       P+S  + L++
Sbjct: 20  RGAAQNTLESYRRDLEAAAEELAAKGVNLAEAETGHIRMTLDTMAAQGFAPTSQARRLSA 79

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS------------ 187
           +R  F++   + +   +P   +  PK++    +  + E++ +     +            
Sbjct: 80  LRQFFRFLYSEGFRQDDPTGILYAPKKQKPLPKIMSVENVGKLLDRAALEANEAAEPGER 139

Query: 188 -EGSQPRLAFEFLLYSGLRCSDSCRAGVQ-HLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
            +  +     E L  +GLR S+     V     ++ F +   K      V L       L
Sbjct: 140 IKALRLHALLETLYATGLRVSELVGLPVTVARTDHRFLLVRGKGSKDRMVPLSRKARDAL 199

Query: 246 AM-------TPIGKETFFIN---NDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKF 292
                     P   +  ++    ++   +    F+   K  A +AG+  S    H +R  
Sbjct: 200 QKFLTLRDSLPGSDDNPWLFPTFSESGHLARQVFARELKGLAARAGLAASSASPHVLRHA 259

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324
            A+     GA    +    G   +   + YT 
Sbjct: 260 FASHLLQNGADLRTVQQLLGHADISTTQIYTH 291


>gi|255100980|ref|ZP_05329957.1| integrase [Clostridium difficile QCD-63q42]
          Length = 400

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 47/300 (15%), Positives = 87/300 (29%), Gaps = 44/300 (14%)

Query: 85  GSLAVNSRISFESYFDQII-RKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSM 140
           G++ + ++   +   + +     G      +     +      K      SS   +  S+
Sbjct: 101 GNVRLGTKKQRQYLMELLKNDPLGSRSIDSVKPSDAKDWAIRMKGNGVAYSSINNYKRSL 160

Query: 141 RVLFKWAVRQEYVAINPCL--SVERPKRKTEGIRPWTKED---MQQFKSFWSEGSQPRLA 195
           +  F  A+  +Y+  NP         +  T+     T+E    +  F        Q    
Sbjct: 161 KASFYMAIEDDYIRKNPFNFDLNTVIENDTKPKEALTEEQEANLLAFVKEDKVYKQYYDE 220

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIF---------------SIKTQKTGTIIT-VELPD 239
              LL +GLR S+ C    +    N                  I+T KT   +  + + +
Sbjct: 221 IVILLGTGLRISELCGLTTKLDMQNRIIDVDHQLLRDSEIGYYIETPKTKNGVRQIPMSE 280

Query: 240 G--------FMKLLAMTPIG----KETFFINNDKQKMNA----TQFSIWFKAKAT---KA 280
                            PI     +   F+  D     A    +  S   K       +A
Sbjct: 281 EVYQAFQRVLKNRQKAEPIVIDGYRNFLFLKKDGFPKVACNYQSMLSSLVKKYNKTHKEA 340

Query: 281 GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
             + + H +R    T  A+AG     L    G   +     Y   A       +  R ++
Sbjct: 341 LPHITPHTLRHTFCTRFANAGMNPKALQYIMGHANITMTLNYYAHATFTSAKAEMMRLVA 400


>gi|322690727|ref|YP_004220297.1| phage integrase [Bifidobacterium longum subsp. longum JCM 1217]
 gi|320455583|dbj|BAJ66205.1| phage integrase [Bifidobacterium longum subsp. longum JCM 1217]
          Length = 379

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 51/354 (14%), Positives = 105/354 (29%), Gaps = 65/354 (18%)

Query: 56  PKREYINSPRKKPTT---LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR-KSGDFDY 111
            K EY  S R    T   LK  +  +        L  ++  ++ S  + +I+   G    
Sbjct: 17  KKLEYERSGRMPSQTTPYLKDWLDRWLDEIVKPRLRPSTLATYRSTVEALIKPAIGGVRL 76

Query: 112 RKITTKHIRSGVE------------SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL 159
            ++  KH R   E             +  + ++A     ++      AV++  +  NP  
Sbjct: 77  GRLEPKHFRLMEEYITKGDDTCDPPRKPRSSATAGSAWRTLHKALDDAVKEGIIESNPSD 136

Query: 160 SVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC--------- 210
             E P+      +  T     Q  +  ++     L +     +G+R  +           
Sbjct: 137 RAEAPRVVYTERKILTPVQAGQLINAEND-VMWHLMWRLAYETGMRQGERLGLTNSEIQL 195

Query: 211 ---------------------------RAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
                                        G +H+    + +  +       + LP+    
Sbjct: 196 IDNAVCIVVEWQLKVYNNVKGVRDIPSSLGARHVTGKAYLVPPKTNAGRRVIPLPESLAV 255

Query: 244 LLAMTPIG------KETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSAT 295
            L     G       +  F+  D   +N    +  +K    + G+  +   H  R  +AT
Sbjct: 256 ELGRYIKGTGRTNSDDLVFVQADGTPLNRMIETRAWKKALNRVGLPDDYVPHSARHTAAT 315

Query: 296 ISADAGATAHELMATYGWKTVDQAET-YTK--GADRIRLGIKNSRRISSVVDSD 346
             A  G +     +  G   +      YT    AD  +  I     + ++  ++
Sbjct: 316 AMAQLGMSDKVRESIMGHSDISVTNRVYTHVGTADASK-AINGVETLLALEPAN 368


>gi|218295944|ref|ZP_03496724.1| integrase family protein [Thermus aquaticus Y51MC23]
 gi|218243682|gb|EED10210.1| integrase family protein [Thermus aquaticus Y51MC23]
          Length = 391

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 49/313 (15%), Positives = 103/313 (32%), Gaps = 43/313 (13%)

Query: 49  SALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII----- 103
            AL     ++           T +    EY +      L  NS    +      +     
Sbjct: 49  QALAQMVAEQARGVLMDPSRLTTRDFALEYLRRLEREGLRPNSIRLAQGELAYALPSLKD 108

Query: 104 ----RKSGDFDYRKITTKHIRSGVES---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAIN 156
                  G    +++   H+R+ V+      + P +  + L  ++ LF+ A+R E VA N
Sbjct: 109 PKAHDPLGRMRLQEVKPVHVRAAVDRVIEAGYAPRTVARVLMRLKALFREALRLELVARN 168

Query: 157 PCLSVE-RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR---LAFEFLLYSGLRCSDSCRA 212
           P  +++ R  +  +  R    E++ +     +E S+ R   L    +L +GLR  ++   
Sbjct: 169 PAEAIQVRLPKGEKAARALEPEEVARLLE-AAEASRSRDMALLLRLMLETGLRRGEALAL 227

Query: 213 GVQHLQNNIFSIKTQKTGTII-----TVELPDGFMK--------------------LLAM 247
               +      ++  +    +        L     K                    L  +
Sbjct: 228 QWGDVDLERGEVRVWRAWAKVGSKGAFTPLKTPTAKRVVPLPLGLLRRLKARKEELLERL 287

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHE 306
            P   +   +    + ++   F+ + +  A KAG+ +   H +R   AT++   G     
Sbjct: 288 NPEEVDGLHLVGGVKPVDPDAFNHYLRRLAEKAGLGRVRVHDLRHTWATLALSRGIPLEV 347

Query: 307 LMATYGWKTVDQA 319
           +    G  +    
Sbjct: 348 VSERLGHASPTIT 360


>gi|28371755|gb|AAO38263.1| tyrosine recombinase IntIA [Vibrio natriegens]
          Length = 320

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 65/213 (30%), Gaps = 52/213 (24%)

Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225
            + +     T++++++F        + +L    L  SGLR  +  R  +Q +  +  +I+
Sbjct: 98  TERKLPVVLTRDEIRRFIQHIDP--KYKLQTLLLYGSGLRLMECLRLRIQDIDYDYGAIR 155

Query: 226 --TQKTGTIITVELPDGFMKLLAMTPIGKETFFINN------------------------ 259
               K G   TV L       L        +++  +                        
Sbjct: 156 VWQGKGGKNRTVTLAKELHSSLKAQVDLARSYYQKDCHMPGYAGVYISEGLQRKYPNAQL 215

Query: 260 ----------------------DKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSAT 295
                                  +  +N +      K  A  AG+ KS   H +R   AT
Sbjct: 216 DFNWHFLFPSAKLSVDPEMGELRRHHINESALQRAVKRSAKDAGIEKSVTCHTLRHSFAT 275

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADR 328
              ++GA    +    G   V   + YT   +R
Sbjct: 276 HLLESGADIRTVQEQLGHSDVKTTQIYTHVIER 308


>gi|152973358|ref|YP_001337138.1| putative prophage gp Int for integrase [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|150958207|gb|ABR80237.1| putative prophage gp Int for integrase [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
          Length = 335

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 49/282 (17%), Positives = 84/282 (29%), Gaps = 36/282 (12%)

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
           ++   TLK L+  +  SAH  +L    +     +        G+   R    +      E
Sbjct: 51  KEDRRTLKELVDSWY-SAHGITLKDGLKRQLAMH--HAFECMGEPLARDFDAQMFSRYRE 107

Query: 125 SR------------KHTPSSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGI 171
            R            + +P +    L   R +F    R   +   NP  ++ RP R  E  
Sbjct: 108 KRLKGEYARSNRVKEVSPRTLNLELAYFRAVFNELNRLGEWKGENPLKNM-RPFRTEEME 166

Query: 172 RPW-TKEDMQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
             W T++ + Q          P L       L +G R S++       L     +    K
Sbjct: 167 MAWLTQDQISQLLGECKRHEHPDLETVVRICLATGARWSEAESLRKSQLAKYKITYTNTK 226

Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA-- 286
                TV +     + L             +DK+    +     F++   + G+      
Sbjct: 227 GRKNRTVPISKELYETLP------------DDKKGRLFSDCYGAFRSALERTGIELPPGQ 274

Query: 287 --HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
             H +R   A+     G     L    G   +     Y   A
Sbjct: 275 LTHVLRHTFASHFMMNGGNILVLQRVLGHTDIKMTMRYAHFA 316


>gi|119963826|ref|YP_947503.1| phage integrase family protein [Arthrobacter aurescens TC1]
 gi|119950685|gb|ABM09596.1| phage integrase family domain protein [Arthrobacter aurescens TC1]
          Length = 304

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 37/253 (14%), Positives = 81/253 (32%), Gaps = 19/253 (7%)

Query: 84  WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT--PSSAIQFLTS-M 140
           + +   ++     ++  +I    G    + +    I++            S +  L S +
Sbjct: 19  YENNRPSTVRQARTHIKRINGDFGSRALKSVRPSEIKAWTARLSDEGLADSTVYALHSRL 78

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200
             LF  AV    +  +P      PK   +     T   +         G QP  A     
Sbjct: 79  SQLFADAVHDGLLPKSPVSRRTAPKAGKQRAYVATTAQVWALHDAMPSGLQP--AILLAA 136

Query: 201 YSGLRCSDSCRAGVQHLQ--NNIFS---------IKTQKTGTIITVELPDGFMKLLAMTP 249
           ++GLR  ++    V  +     I +         +KT+++   I V         +    
Sbjct: 137 FAGLRIGEAVALRVSDVDFMRGIITPAIQYPGVELKTEESKNPIPVPQNLCLELSVNHAR 196

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATK-AGVNK--SAHGVRKFSATISADAGATAHE 306
            G ET   N   + ++  +   +F+   +   G+ +    H +R + A++    G     
Sbjct: 197 WGSETLVTNEWGRSISPHRVEHYFRDARSSVKGLPEGFRFHDLRHYFASLLIAQGLDVKV 256

Query: 307 LMATYGWKTVDQA 319
           +  +    +    
Sbjct: 257 VQKSLRHSSAKTT 269


>gi|146301413|ref|YP_001196004.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
 gi|146155831|gb|ABQ06685.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
          Length = 305

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 41/298 (13%), Positives = 90/298 (30%), Gaps = 51/298 (17%)

Query: 80  KSAHWGSLAV---------NSRISFESYFDQII-------RKSGDFDYRKITTKHIRSGV 123
           +S  +  L V         N +    + +  II        ++G    + +T+K     +
Sbjct: 6   QSREFLRLTVAFGEFVKVRNYKQGRSNLYKNIITEFLIWLEQAGISRIQNVTSKESVKYL 65

Query: 124 ESRKHTPSS------AIQFLTS---MRVLFK-WAVRQEYVAINPCLSVERPKRKTEGIR- 172
           E     P        A + +     +  LF+ + +  + +       +      T+  R 
Sbjct: 66  EYLSSRPKKRGNGILAEKTIKLHLFVHGLFQVYLLENKEIQN--TYYIPSITGGTQKPRN 123

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTG 230
             T E+++      +E    +         GLR S+     ++ +     +  ++  K  
Sbjct: 124 ILTIEEIRLVYE-HAENEMEKALLSIAYGCGLRRSEIASLDLKDVNLIKGMLVVRQGKGN 182

Query: 231 TIITVELPDGFMKLLAMTPIGK------------ETFFINNDKQKMNATQFSIWFKAKAT 278
               V + D  +  L      +            E FFIN+  ++      +        
Sbjct: 183 KRREVPMSDTVLDYLTKYVRDERPERLTGRNQNEEAFFINSRGRRSTGENLNEILNKMIE 242

Query: 279 KAGV------NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
           + G         + H +R   A   A+  A    +    G   ++    Y    ++ R
Sbjct: 243 QTGKFELVQKEITLHCLRHSIAYHLAENNAGIDFIRTFLGHTQINTTYIYA-VQNKKR 299


>gi|77408589|ref|ZP_00785324.1| site-specific recombinase, phage integrase family [Streptococcus
           agalactiae COH1]
 gi|314937584|ref|ZP_07844910.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133a04]
 gi|314942917|ref|ZP_07849730.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133C]
 gi|314950863|ref|ZP_07853932.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133A]
 gi|314991488|ref|ZP_07856965.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133B]
 gi|314994992|ref|ZP_07860112.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133a01]
 gi|77172782|gb|EAO75916.1| site-specific recombinase, phage integrase family [Streptococcus
           agalactiae COH1]
 gi|313590718|gb|EFR69563.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133a01]
 gi|313593968|gb|EFR72813.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133B]
 gi|313596872|gb|EFR75717.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133A]
 gi|313598389|gb|EFR77234.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133C]
 gi|313642961|gb|EFS07541.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133a04]
 gi|323479383|gb|ADX78822.1| phage integrase family protein [Enterococcus faecalis 62]
          Length = 397

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 48/342 (14%), Positives = 105/342 (30%), Gaps = 57/342 (16%)

Query: 23  YYFRKGHG--------RRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           YYFR   G        ++ R  +  +      Y   L      +    S  K   T    
Sbjct: 14  YYFRANLGYDSKGKKIQKYRSGFTTKKEAREEYSKLLL----MKPEELSENKDKMTFNHY 69

Query: 75  ISE----YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
           I E    + K+     + + +  +      +            I    +++         
Sbjct: 70  IFEIFLPWYKT----QVKLRTYENRLPTIKKHFSYFDKMAVSDIEPIDVQNWQLKLSKKC 125

Query: 131 SSAIQFLTSMRVLFKWAVRQ----EYVAINPCLSVERPKRKTEGIRPWTKEDMQQF---- 182
            S   ++ +++ LF  A+ +         NP   +   K++   I  WTKE+ ++     
Sbjct: 126 KS--SYVRAVQGLFSVAMDRAIVLGITTTNPSKIIGNVKKQKSKIEFWTKEEFEKVISLI 183

Query: 183 --KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--------NNIFSIKTQ----- 227
             + ++       L F F+  +G+R  ++     + +         N     K Q     
Sbjct: 184 YKEDYYQHFLFISLWFLFM--TGMRIGEATAIQWEDIDFDSGVLTINKTLYYKNQSDYRF 241

Query: 228 ---KTGTIITVELPDG-----FMKLLAMTPIGKET-FFINNDKQKMNATQFSIWFKAKAT 278
              KT   +   + D        +         +T F ++ +         +   +  A 
Sbjct: 242 VEPKTKASVRHIVLDECTLNYLSEWKKAQQNLIQTDFVMSYNGIPTQKHTLAHAIERYAK 301

Query: 279 KAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
            A +++   HG+R   A++    G     +    G + ++  
Sbjct: 302 LASIHRIRIHGLRHSHASLLISMGENPLIIKDRLGHEDIETT 343


>gi|325857603|ref|ZP_08172539.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
 gi|325483109|gb|EGC86091.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
          Length = 435

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 54/293 (18%), Positives = 97/293 (33%), Gaps = 27/293 (9%)

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLT 138
           R    + +L+   R   E   D+ ++        +   +  R  ++ R    ++   +L 
Sbjct: 123 RTEGTYLNLSHADRNLHEFVKDKGVQDILIGAITEDLFEEYRFYLKKRGLKGTTINNYLC 182

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WSEGSQPRLA 195
            +  L   AV +  +  NP  + +  K     IR   K DM +  +     SE  Q RL 
Sbjct: 183 WLSRLMYRAVSRNIIRCNPFENAKYEKEDKN-IRYLQKYDMARLMAMRMNDSEAEQARLM 241

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQ---NNIFSIK--TQKTGTIITVELPDGFMKLL-AMTP 249
           F F  ++GL  +D      +H+Q   +    I+   QKT     V L      ++     
Sbjct: 242 FIFSCFTGLAIADMETLQYKHIQTAADGQKYIRKERQKTKVEFVVPLHPIAETIISHCRK 301

Query: 250 IGKETFFINNDKQKMNATQFSIWFK-------------AKATKAGV--NKSAHGVRKFSA 294
                     D+Q M        F                    G+    S H  R    
Sbjct: 302 ANHNDLTTGQDEQTMKEKGDGFVFHPDSSRSVMNSKLYIVGKACGISQRLSFHMARHTFG 361

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
           T+S  AG     +    G  ++   + Y +  D      ++  R+ + + S +
Sbjct: 362 TMSLSAGIPIESIAKMMGHASISSTQIYAQVTDCK--ISEDMDRLIAKLSSKE 412


>gi|270294597|ref|ZP_06200799.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270276064|gb|EFA21924.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 408

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 51/295 (17%), Positives = 94/295 (31%), Gaps = 36/295 (12%)

Query: 76  SEYRKSAHWGSLAVNSRISFE----SYFDQIIRKSG--DFDYRKITTKHIRSGVESRKH- 128
            +Y +     + A  +   +E       + +  K    D   + I    I   +   K+ 
Sbjct: 118 EQYLQKVK-MNTADKTYSRYELTKKRLMEFMKFKYSVSDMLIKDINVVFIEDFLLYIKNN 176

Query: 129 ---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
              + ++A++F+   R +  +A     V  +P     R + +       T E++    + 
Sbjct: 177 YGCSHNTAMKFVQRFRTVVNFAKNTGLVTADP-FGSYRVRFERTDRDYLTMEEITTIYNH 235

Query: 186 W---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVEL 237
                   Q R  F F  Y+ L   D C    + ++           K  KT    TV L
Sbjct: 236 EFSSKRLEQVRDLFIFSCYTALSYIDVCELKQEDIRTGFDGNLWIIRKRHKTNVTSTVRL 295

Query: 238 PDG----FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRK 291
            D       K     P GK    I+N K        + + K  A   G+ K+   H  R 
Sbjct: 296 LDIPKAILEKYKDKLPNGKILPVISNQK-------MNDYLKEIAAICGIEKTLTYHVARH 348

Query: 292 FSATI-SADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345
             AT      G     +    G   +   + Y +  +       +   ++  +D+
Sbjct: 349 SCATSVLLANGVPIETVSKILGHTNIRTTQIYARITNLK--VSNDMEMLAQKLDA 401


>gi|222080269|ref|YP_002540133.1| integrase/recombinase [Agrobacterium vitis S4]
 gi|221738914|gb|ACM39693.1| integrase/recombinase [Agrobacterium vitis S4]
          Length = 325

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 44/276 (15%), Positives = 88/276 (31%), Gaps = 25/276 (9%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF-DYRKITTKHIRSGVESRKHTPSS 132
           LI +++ +      AV++  ++ +   + +          +   + + + V +     + 
Sbjct: 29  LIGKFQAALRAEGCAVSTVRTYGTLAGEFLSFVDTRGRLTECDARTVEAFVATLSGYQAK 88

Query: 133 AI-QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP--WTKEDMQQFKSFW--- 186
            + Q L ++R   ++A RQ  V  +   +V   K       P  W   D+ +        
Sbjct: 89  TVEQKLCAVRSFLRYAERQGQVNADVLKAVPAVKSSKHARVPSVWDPADVARILDAIDQG 148

Query: 187 -SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDG--- 240
              G +       +   GLR  D  R  +       N   ++  KTG  I + L      
Sbjct: 149 NPSGKRDYAIITLVTRLGLRSIDVKRLELDDFDWPGNRLWVRQTKTGHRIQLPLLKDVGW 208

Query: 241 ----FMKLLAMTPIGKETFFI-NNDKQKMNATQFSIWFK-AKATKAGVNKS------AHG 288
               +++    +   ++ F          +            A  A V  S       H 
Sbjct: 209 AIINYIRHGRPSTDCRQVFLRHTTPVGPFSDQDHLHQILCKHARVARVTLSDHRRHGMHS 268

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +R   AT   + G    E+    G ++V     Y K
Sbjct: 269 LRHTLATRLMEGGTPIEEIADILGHQSVGTTGVYLK 304


>gi|20065985|ref|NP_612851.1| putative integrase [Clostridium phage phi3626]
 gi|168211657|ref|ZP_02637282.1| phage integrase [Clostridium perfringens B str. ATCC 3626]
 gi|19908316|gb|AAL96792.1| putative integrase [Clostridium phage phi3626]
 gi|170710375|gb|EDT22557.1| phage integrase [Clostridium perfringens B str. ATCC 3626]
          Length = 349

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 45/277 (16%), Positives = 91/277 (32%), Gaps = 25/277 (9%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHT 129
            K L   Y + A    +   +  + +   + +I+    D     IT   IR    + K  
Sbjct: 58  FKTLTEVYLEDAK-IRVRETTLENKKYLINLKILPYFKDKLISNITPNDIRQWQNTLKSM 116

Query: 130 PSSAIQFLTS---MRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQQFKSF 185
             S     T    +  +F + ++   +  NPC       K+  + ++ WT E  + F  +
Sbjct: 117 NYSLTYLKTINNQLTAIFNFGIKFYGLNTNPCHRAGSMGKKNADDMKFWTTEQFKTFIEY 176

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT---------------- 229
             +    +LAFE L ++G+R  +        +     +I   KT                
Sbjct: 177 NDKPIS-KLAFEVLFWTGMRSGELMALTFNDIDLKNKTININKTYTRLNGKDIINPPKTP 235

Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHG 288
            +   V +P+     +         +  ++              K    K+ +     H 
Sbjct: 236 KSKRKVSIPNALCSYIETYITKLYDYNKSDRIFSFTKYFLVHEMKRVCKKSNIPIIRIHD 295

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
           +R   A++  + G T   +    G + V    +TY+ 
Sbjct: 296 LRHSHASLLIELGFTPLLISERLGHEKVQTTLDTYSH 332


>gi|317967959|ref|ZP_07969349.1| integrase/recombinase [Synechococcus sp. CB0205]
          Length = 319

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 38/268 (14%), Positives = 75/268 (27%), Gaps = 31/268 (11%)

Query: 88  AVNSRISFESYFDQII----RKSGDFDYRKITTKHIRSGVESRKH-------TPSSAIQF 136
           +  +R  +       +    R       R+I      + +    H        P S  + 
Sbjct: 42  SQETRDGYAREIRHYVSWRDRHHPHLHLREIDPSLTENWIAELLHAVEVGELKPRSFNRR 101

Query: 137 LTSMRVLFKWAVRQEY-----VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG-- 189
           ++++  +++WA          V  NP +         +  +P  + D+       S+   
Sbjct: 102 VSAVSAMYRWASEPSRSAVTGVPRNP-IPPRVQLHAPKLAKPLPEADLSAVLGRISQAKA 160

Query: 190 ------SQPRLAFEFLLYSGLRCSDSCRAGVQHL---QNNIFSIKTQKTGTIITVEL--- 237
                 ++  +        G R S+  R     +             K     TV +   
Sbjct: 161 EGSKTAARDFVLVRGSYLLGCRVSELARLKWGDIEAVDGGGQVTLLGKGSKQRTVRISVE 220

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATIS 297
                + L     G   F  N     ++    +   +    +A V+   H +R   AT +
Sbjct: 221 TLELFESLGRRESGDWVFPSNRKDGPLSRQAIAERMRRWGREAEVHLHPHKLRHTHATHA 280

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKG 325
              G     L AT G  +      Y   
Sbjct: 281 IRRGVDVFTLQATLGHSSSATTSGYVAA 308


>gi|2618945|gb|AAC48878.1| integrase [Phage 21]
          Length = 356

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 50/302 (16%), Positives = 94/302 (31%), Gaps = 39/302 (12%)

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKSAH----WGSLAVNSRISFESYFDQIIRKSGDF 109
           S  +R      R+   T+   + +Y            L  NS               G  
Sbjct: 45  SVNERLERMKGRRSDITVTEWLDKYISIQEDRLQHNELRPNSYRQKGKPIRLFREHCGMQ 104

Query: 110 DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL----FKWAVRQEYVA--INPCLSVER 163
             + IT   I   +++ K       +    +R++    FK A    +V    NP  + ++
Sbjct: 105 HLKDITALDIAEIIDAVKAEGH--NRMAQVVRMVLIDVFKEAQHAGHVPPGFNPAQATKQ 162

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQ-PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222
           P+ +    R  +  + Q      S      +      L +G R  D C      + +++ 
Sbjct: 163 PRNRVNRQR-LSLPEWQAIFEIVSRRQPYLKCGMLLALVTGQRLGDICNLKFSDIWDDML 221

Query: 223 SIKTQKTGTIITVELP---DGFMKLLAMTPIGKETFFIN-------------NDKQKMNA 266
            I  +KTG+ + + L    D     L           ++             N   +++A
Sbjct: 222 HITQEKTGSKLAIPLNLKCDALNITLREVISQCRDAVVSKYLVHYRHTTSQANRGDQVSA 281

Query: 267 TQFSIWFKAKATKAGVNK------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
              +  FK    K G+        + H  R  S  +  + G    +L    G K+    +
Sbjct: 282 NTLTTAFKKAREKCGIKWEQGTAPTFHEQRSLSERLYREQGLDTQKL---LGHKSRKMTD 338

Query: 321 TY 322
            Y
Sbjct: 339 RY 340


>gi|76803916|gb|ABA55859.1| IntI [Vibrio sp. DAT722]
          Length = 320

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 38/213 (17%), Positives = 70/213 (32%), Gaps = 52/213 (24%)

Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225
            + +     T++++++F        + +L  + L  SGLR  +  R  +Q +  +  +++
Sbjct: 98  TEKKLPVVLTRDEVRRFVQHIDP--KYKLHIQLLYGSGLRIMECLRLRIQDIDYDYGALR 155

Query: 226 --TQKTGTIITV----ELPDGFMKLLAMT------------------------------- 248
               K G   TV    EL D     + +T                               
Sbjct: 156 VWQGKGGKNRTVTLAKELHDPLKSQVNITRDYYQKDRHMGGYAGVYISDGLRKKYPGAEL 215

Query: 249 --------PIGKETFFINN---DKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSAT 295
                   P  K +   +     +  +N +      K  A  AG+ KS   H +R   AT
Sbjct: 216 DFNWHFLFPSTKLSIDADTGEFRRHHVNESAIQRAVKRAAKDAGIEKSVTCHTLRHSFAT 275

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADR 328
              ++GA    +    G   V   + YT   +R
Sbjct: 276 HLLESGADIRTVQEQLGHTDVKTTQIYTHVIER 308


>gi|329896534|ref|ZP_08271592.1| Integrase [gamma proteobacterium IMCC3088]
 gi|328921751|gb|EGG29124.1| Integrase [gamma proteobacterium IMCC3088]
          Length = 411

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 55/310 (17%), Positives = 105/310 (33%), Gaps = 37/310 (11%)

Query: 49  SALTGSTPKREYINSPRKKPTTLKWLISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSG 107
               G  P        ++   T+  L +++  +           +  +E    +I  + G
Sbjct: 78  QLREGVDPLLAKRREEQESIQTVDDLFADWYPTLVSRLKHPEIPKRVYEK---EIGPQIG 134

Query: 108 DFDYRKITTKHIRSGVE--SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV---E 162
           ++   ++T + IRS +E   +    + A   L   + LF   V+ + + +NP       +
Sbjct: 135 EYKLVQVTARDIRSLIELIKKSGRMAIANDALGYCKQLFNHGVKLDLIGLNPASPFTFKD 194

Query: 163 RPKRKTEGIRPWTKEDMQQFKSFWSEGSQ-----PRLAFEFLLYSGLRCSDSCRAGVQHL 217
               +    R  T+ +++ F     + S+       LA   L+  G+R S+ C A  +  
Sbjct: 195 AGGLEKSRERALTESELRHFLDVARQNSKSFSRDNYLACLLLVTLGVRKSELCEARWEEF 254

Query: 218 --QNNIFSI--KTQKTGTIITVELPDGFMKLLAMT---PIGKETFFI---NNDKQKMNAT 267
             ++ I+ +     KTG  + + L    +  L       IG E          K  M A 
Sbjct: 255 SLRDGIWKLPATRSKTGVGLDIPLSPIVVAWLQELEVRAIGSEYVLPSRRTASKPHMGAD 314

Query: 268 QFSIWF-KAKATKAGVNK------------SAHGVRKFSATISADAGATAHELMATYGWK 314
             +    K    +AG  K            + H +R+   T+ A  G   +        K
Sbjct: 315 TLNRAISKLFGREAGKKKQPPNLMGDMEHFTVHDLRRTCRTLLAQQGTPGYVAERCLNHK 374

Query: 315 TVDQAETYTK 324
                  Y K
Sbjct: 375 LKGVEGIYNK 384


>gi|257459280|ref|ZP_05624394.1| putative phage integrase [Campylobacter gracilis RM3268]
 gi|257443293|gb|EEV18422.1| putative phage integrase [Campylobacter gracilis RM3268]
          Length = 290

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 45/241 (18%), Positives = 83/241 (34%), Gaps = 28/241 (11%)

Query: 109 FDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
            D   I    I+  +   +    PS+  + +   R   + AV    +A NP L  + PK 
Sbjct: 37  KDAACIKKVDIQRWLAGLEEGLAPSTIKRVVLCWRRACEQAVEAGKLAKNPFLRAKYPKI 96

Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-- 224
                 P++ E++    S  S   +  LAF F  Y+G RC +        +     SI  
Sbjct: 97  PRSKTDPFSVEEVDLMLSKASGRLESFLAFAF--YTGARCCEILALCWDDIDTEAMSISI 154

Query: 225 ----------KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK--MNATQ-FSI 271
                        KTG    V +    +  +A     +++ ++ + KQ     +T  F  
Sbjct: 155 SKSLTDGLVKPRTKTGEDRIVPIFAPLLPYIAQLEKHRDSEWVFSRKQDHLFGSTALFGN 214

Query: 272 -WFKAKATKAGVNKSA--HGVRKFSATISADAGATAHE----LMATYGWKTVDQA-ETYT 323
             ++    + G+   +  H  R   AT   +           +    G  ++D   + Y 
Sbjct: 215 GRWRKFLAECGIPYRSARHT-RHTFATHMVERAVKGEIPLKWVSQILGHASLDMTIKVYA 273

Query: 324 K 324
           +
Sbjct: 274 R 274


>gi|217971599|ref|YP_002356350.1| integrase family protein [Shewanella baltica OS223]
 gi|217496734|gb|ACK44927.1| integrase family protein [Shewanella baltica OS223]
          Length = 403

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 61/330 (18%), Positives = 115/330 (34%), Gaps = 38/330 (11%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD 110
             G  P      + + +  T+  L +++    +   L  +       Y   I    G F+
Sbjct: 76  RDGLDPLVAKKRAEQAEIKTVDDLFADWHL-GNIKRLKHHEIPE-RIYRKDIAPHIGSFN 133

Query: 111 YRKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV---ERPK 165
              +T + IR+ +++   T  P+ A   L   + LF   ++ + ++ NP  +    +   
Sbjct: 134 VDSVTARDIRAVLQAIAATNRPAIANDALMYSKQLFNHGIKLDLLSANPASAFSVSDAGG 193

Query: 166 RKTEGIRPWTKEDMQQFKSFWSEG-----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220
            +    R  T E++ QF     +          LA   L+  G+R S+   A  +     
Sbjct: 194 VEKSKDRALTIEELTQFFKAARDNNDSFSRDNYLACALLVTLGIRKSELAEAPWKEFDLE 253

Query: 221 I----FSIKTQKTGTIITVELPDGFMKLLAMTPI---GKETFFINNDKQK---MNATQFS 270
                 S +  K+G  I + LP+  M  L    +   G E  F +    K   M +   +
Sbjct: 254 QKVWNLSKERSKSGVGIAIPLPEVVMTWLQELKVRACGSEYVFPSRRSSKNPHMGSDTLN 313

Query: 271 IWF-KAKATKAGVNK------------SAHGVRKFSATISADAGATAHELMATYGWKTVD 317
               K    +AG  K            + H +R+   T+ A  G   H        K   
Sbjct: 314 RAITKFFGHEAGKKKQPPNLMGDMAHFTVHDLRRTCRTLLAKQGTLGHVAERCLNHKLKG 373

Query: 318 QAETYTK--GADRIRLGI-KNSRRISSVVD 344
               Y +    D  +  + K S ++ S+++
Sbjct: 374 VEGIYNQHDYFDERKEALTKLSEKLQSIIN 403


>gi|124269007|ref|YP_001023011.1| phage-related integrase [Methylibium petroleiphilum PM1]
 gi|124261782|gb|ABM96776.1| phage-related integrase [Methylibium petroleiphilum PM1]
          Length = 403

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 55/338 (16%), Positives = 115/338 (34%), Gaps = 34/338 (10%)

Query: 19  GKIIYYFR-KGHGRRIRLPYPHESTFI----------PAYMSALTGSTPKREYINSPRKK 67
           G I++ +R +  GRR +L                    A  +A++ S  K++ +      
Sbjct: 34  GGIVWRYRYRVDGRREKLTLGKYPALTLKNARLKRDEAAQAAAMSKSPAKQKQLAKRAAA 93

Query: 68  -PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVES 125
             TT+      + +          +      YFD+ I+   G    R +TT+ +R+ +  
Sbjct: 94  DATTVSEFGERFFREIVAKDRQDITIP--RRYFDKAIVPAIGAKPVRDVTTEDVRAIIWK 151

Query: 126 RKHTP--SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER---PKRKTEGIRPWTKEDMQ 180
           +K     ++A      ++ LF +A+    + +NP L++      K K+   R  + ++++
Sbjct: 152 KKDEGFDAAAGSIRGVLKRLFDYAMTAGLIFVNPVLALPMRHVHKTKSRE-RALSPDEVR 210

Query: 181 QFKSFWSEGSQPR---LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT----QKTGTII 233
            F     E +  R   +    +L + +R S+   A  +H+              KTG   
Sbjct: 211 VFLKAAFESNIRRQFKIGLHLILLTMVRKSELLLARWEHVDFEQAEWHIPAEHSKTGKPH 270

Query: 234 TVELPD---GFMKLLAMTPIGKETFFINND--KQKMNATQFSIWFKAKATKAGVNK-SAH 287
            V L        K L     G            +       +   K       +   + H
Sbjct: 271 IVFLSRQSIALFKELQALAGGSALVLPGRGSLTKPFAHNAINTALKVALAGQPIPAFTVH 330

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
            +R+ ++T+  + G  +  +              Y + 
Sbjct: 331 DLRRTASTLLHENGWASDVVEKALNHTIGGVRGVYNRA 368


>gi|331672418|ref|ZP_08373209.1| putative integrase [Escherichia coli TA280]
 gi|331070613|gb|EGI41977.1| putative integrase [Escherichia coli TA280]
          Length = 412

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 56/367 (15%), Positives = 118/367 (32%), Gaps = 38/367 (10%)

Query: 16  TRH---GKIIYYF--RKGHGRRI---RLPYPHESTFI-----------PAYMSALTGSTP 56
            RH   G + +YF  R G GR++   RL   +                 A+++       
Sbjct: 35  VRHSTSGLLTWYFTYRAGTGRQVSPERLRLGNYPDLSLKAAREIAAQCRAWLAEGKNPRY 94

Query: 57  KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT 116
           +          P T+K  ++ + +S        +           II + G     K   
Sbjct: 95  ELNRAVQDALAPVTVKEALTYWLESYA-KEKRTDYESLKSRINKHIISQIGALPLEKCEL 153

Query: 117 KHIRSGVESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV---ERPKRKTEGIR 172
           +H  +  +   K +P SA   L   +   K+  ++ Y   N    +   +  K+     R
Sbjct: 154 RHWLACFDQMAKRSPVSAGFLLQVCKQALKYCRKRRYAISNVLDDMVVGDVGKKAEVSER 213

Query: 173 PWTKEDM-QQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT--- 226
             T +++ +  ++   +   P        L+  G R ++  R+ VQ              
Sbjct: 214 VLTNKELGELLRALDDKIFPPYYSALIRLLIVFGCRTTELRRSEVQEWDFKEMLWTVPKE 273

Query: 227 -QKTGTIITVELPDGFMKLLAMTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGVN 283
             KT   I   +P+  +  +             +   K + +  ++      +  +A   
Sbjct: 274 HSKTKVAIFRPIPESILPFITQLVEQNRHTGLLLGELKGQSSVAEYGRTAHRRINQA--P 331

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY--TKGADRIRLGIKN-SRRIS 340
            + H +R    T+  D G   H +      +       Y  ++  D  R  +     R+ 
Sbjct: 332 WTLHDIRHTFTTMLNDLGVDPHIVEQLTAHQMPGMQRVYNHSRYLDAKRDALNLWVDRLE 391

Query: 341 SVVDSDD 347
            + ++D+
Sbjct: 392 LLQNNDE 398


>gi|294783281|ref|ZP_06748605.1| integrase/recombinase, phage integrase family [Fusobacterium sp.
           1_1_41FAA]
 gi|294480159|gb|EFG27936.1| integrase/recombinase, phage integrase family [Fusobacterium sp.
           1_1_41FAA]
          Length = 346

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 51/283 (18%), Positives = 103/283 (36%), Gaps = 32/283 (11%)

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG---- 122
              T   L  ++  +    +L+  S + +++  + +       D+ K+TT  IR      
Sbjct: 53  SDRTNAELWKKFFLTKKAENLSDKSLLYYKNSLE-LFSLFIKKDFLKVTTDDIRLYLAVE 111

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
            E  +    S       +   F +   +EY++ NP   +++ K +      +T+ ++++ 
Sbjct: 112 REKNQQKAVSIDNIRRILNSFFSFLNEEEYISNNPVKKIKKVKGQKTEKTAFTQLELEKL 171

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
           +    E S  +   E L+ S +R ++     ++ +      IK  + G    V     FM
Sbjct: 172 RMAC-ENSLEKAMMEVLISSAVRATELANIKIRDIDFEKNEIKIIRKGNKEGV----AFM 226

Query: 243 KLLAMTPIGK----------ETFFINND-----------KQKMNATQFSIWFKAKATKAG 281
             +A   I K             +I +              K+    F    K+ AT+A 
Sbjct: 227 STIAALAIKKYISERGNYNTPYLWIVDGLMYKCYKNQILGSKIETEGFRRVLKSIATRAK 286

Query: 282 V-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           V N   H  R+  AT++   G    E+    G + ++    Y 
Sbjct: 287 VENVHPHRFRRTFATMALKKGMDVEEIQQVLGHQNINTTMIYV 329


>gi|293553014|ref|ZP_06673659.1| integrase [Enterococcus faecium E1039]
 gi|291602820|gb|EFF33027.1| integrase [Enterococcus faecium E1039]
          Length = 379

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 57/382 (14%), Positives = 123/382 (32%), Gaps = 53/382 (13%)

Query: 10  FVTKERTRHGKIIYYFRKGHGRRIRLPYPH----ESTFIPAYMSALTGSTPKREYINSPR 65
           +V + +    K I  +   +  + R                    L      +E +    
Sbjct: 2   WVEQTKDGRFKFIERYVDPYTEKTRKKSTTLTSNSPQAWKKAQKILDKKI--KEALEDYN 59

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRIS---FESYFDQIIRKSGDFDYRKITTKHIRSG 122
           K   T   L  E+ +         +        +     I   +   +  +     I   
Sbjct: 60  KSDITFGELYKEWYEYYKQHVKRTSYLKVPMMMKHVSKHISDDTIVRNIDETLINKIIED 119

Query: 123 VESRKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWT----- 175
           + +    + +   Q  T++ V+  +A+ ++Y+  NP L+V+  PK+  E  R  +     
Sbjct: 120 MYTFGDLSLNYTKQTKTTLSVMLNYAIDRKYIQRNPALAVKIHPKKVEEEKRRLSMNKKY 179

Query: 176 --KEDMQQFKSFWSEGSQPRL---AFEFLLYSGLRCSDSCRAGVQHLQNNIFSI------ 224
             KE++ Q         + +L     EFL  +GLR  +     ++  ++   SI      
Sbjct: 180 LEKEEIDQILKQLYSNPRRKLHGIIAEFLYLTGLRYGELLALQMKDYEDGKISINGTLDY 239

Query: 225 -----------KTQKTGTIITVELPDGFMKL---------LAMTPIG-KETFFINNDKQK 263
                        + T +   V+LP+   +L         LA  P    +  FI+     
Sbjct: 240 TSVKMDNAIKTTPKNTYSQREVQLPNRAKELIESVIADNILAGRPTDPDQYIFISTSGTP 299

Query: 264 MNATQFSIWFKA--KATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-E 320
           +    F+       +  +   + S+H  R    ++ ++ G     +M   G    +    
Sbjct: 300 LTLHSFNAILHKVEEELELEKSLSSHIFRHSHVSLLSELGVPLKAIMERVGHSDANTTLS 359

Query: 321 TYTKGADRIRLGIKNSRRISSV 342
            Y     R +  +    +++S+
Sbjct: 360 IYNHVTKRAKQQV--IDKLNSL 379


>gi|154503547|ref|ZP_02040607.1| hypothetical protein RUMGNA_01371 [Ruminococcus gnavus ATCC 29149]
 gi|260589940|ref|ZP_05855853.1| site-specific recombinase, phage integrase family [Blautia hansenii
           DSM 20583]
 gi|153795647|gb|EDN78067.1| hypothetical protein RUMGNA_01371 [Ruminococcus gnavus ATCC 29149]
 gi|260539747|gb|EEX20316.1| site-specific recombinase, phage integrase family [Blautia hansenii
           DSM 20583]
          Length = 393

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 48/344 (13%), Positives = 100/344 (29%), Gaps = 43/344 (12%)

Query: 15  RTRHGKIIYYFRKGHG---------RRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
             R     YYFR   G         ++ R  +  +      Y   +       + +   +
Sbjct: 6   IKRANNGTYYFRANLGYDSVTGKQIQKYRSGFSTKKEARAEYSKLI---IAAEDELAMEK 62

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
           K+P + K  I E     +   +  ++  +  +  ++  +        +I   H+++    
Sbjct: 63  KQP-SFKQFIEEIYLPWYKTQVKESTYRNRLNTIEKHFKFFYRKKVNEIEPIHVQTWQLK 121

Query: 126 RK--HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
               ++P+        + + F  A+       NP   V   K K   +  WT E+ Q+  
Sbjct: 122 LAKDYSPNYVRIIQGMLSLAFDRAIILGLAKKNPARMVGNIKYKKVKVDFWTLEEFQKVI 181

Query: 184 SFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ----------------NNIFS 223
           S   +G        + F  L  +GLR  ++       +                  N + 
Sbjct: 182 SLLYKGDYYEHYLFICFWLLFTTGLRIGEAAALQWDDIDFESGLLSVTKTLYYKSMNEYK 241

Query: 224 IKTQKTGTIITVELPD-----GFMKLLAMTPI--GKETFFINNDKQKMNATQFSIWFKAK 276
               KT   I   + D            +         F ++      +        +  
Sbjct: 242 FVDPKTSASIRTVVLDEDTIRELKDWREVQKKVLKDCNFVLSYSGIPTSKHTLPRALEKL 301

Query: 277 ATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
           A  AGV++   H +R     +    G     +    G + +   
Sbjct: 302 AGLAGVHRIKIHALRHSHVALLISMGVNPLIVKDRLGHEKIQTT 345


>gi|304321832|ref|YP_003855475.1| hypothetical protein PB2503_11439 [Parvularcula bermudensis
           HTCC2503]
 gi|303300734|gb|ADM10333.1| hypothetical protein PB2503_11439 [Parvularcula bermudensis
           HTCC2503]
          Length = 388

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 58/289 (20%), Positives = 97/289 (33%), Gaps = 26/289 (8%)

Query: 50  ALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF---DQIIRKS 106
           A  G  P+      P     TL+  + +Y K A    L   +  S++S        + K 
Sbjct: 82  ARRGEDPRLRKDGIP-----TLRQALEKYLK-ARGDDLRPKTHQSYKSLTVGPKAPLAKI 135

Query: 107 GDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINP-CLSVER 163
           GD     +  +      E    K  P++A   L   R+L     R   +  NP    V  
Sbjct: 136 GDLPMHLLDRQTCAKLHEELAEKRGPATANGALRLARLLLNDVARVYDLPPNPVTRGVRF 195

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWS--EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221
            K +T        E M    +     E  + RL ++ +L +GLR +++      +L +  
Sbjct: 196 AKDRTRDWAV-PLEGMPTLWARLDAMEKVKKRLCWQTMLMTGLRSNEARSMRWANLDDQG 254

Query: 222 FSIKTQKTGTI---ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKAT 278
             +     G       V +P   ++ L +     E  F          T +    K    
Sbjct: 255 VLLVPSPKGGEERAFRVPIPWSLIEDLGVLRGKSEFVF-----PARTRTGYIDQLKRSEK 309

Query: 279 KAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
                 S H +R    T++ +AG +    M     KT D +  Y   A+
Sbjct: 310 ---FPYSPHMMRHTYRTLALEAGVSVETAMILLNHKTNDISSRYVTRAN 355


>gi|329314680|gb|AEB89093.1| Phage integrase [Staphylococcus aureus subsp. aureus T0131]
          Length = 345

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 50/325 (15%), Positives = 110/325 (33%), Gaps = 26/325 (8%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT--TLKWLIS 76
           GK   Y  K  G+R R               A +    K   + S        TL+    
Sbjct: 8   GKKWQYEFKYEGKRYRKKGFRTK------REANSAGLDKLNELRSGFNIDNYITLEEYFE 61

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRSGVE--SRKHTPSSA 133
            + K+     +  N+   + +    I + K G  +  KI  +  +  +   S++H   + 
Sbjct: 62  NWIKTYKQPVVKENTYRHYRNALQHIQKHKIGKMELSKINRQVYQKFINDYSKEHAKETI 121

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSV-----ERPKRKTEGIRPWTKEDMQQFKSFWSE 188
            +   ++R     A+    +  NP   V     +  K + E     T+ ++ +      +
Sbjct: 122 RKTNGAIRSALDDALYDGLIFKNPAYKVNYKAGKPTKSEQEKFISVTEYEILK-DHVRKK 180

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTG-TIITVELPDG----F 241
            ++  LA   ++ +G R S +    ++H+    N   I  +KT  +   + +        
Sbjct: 181 RTRSSLALFIMICTGCRVSGARNIKIEHINQVKNTIFIDERKTDTSPRYISIAKSDMKHI 240

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADA 300
           M +++   I  + +        +N    +   K+      +   ++H +R    +     
Sbjct: 241 MDVISTFAISYDGYIFKEAGSIINLHAINNALKSACRVNNIPIITSHALRHTHCSYLLAK 300

Query: 301 GATAHELMATYGWKTVD-QAETYTK 324
           G + H +    G K +      Y+ 
Sbjct: 301 GVSIHYISKRLGHKNIAITTSMYSH 325


>gi|329964322|ref|ZP_08301403.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
 gi|328525371|gb|EGF52419.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
          Length = 412

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 51/316 (16%), Positives = 104/316 (32%), Gaps = 29/316 (9%)

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKSAHWG---SLAVNSRISFESYFDQIIR------ 104
           +T  +E     +    TL  L  ++ +         ++  +  ++    +++        
Sbjct: 96  ATAVKEAFQGSKDTRMTLFKLFDKHIEEIRARVGIDVSHRTLPNYLYTRNRLADFVSGRF 155

Query: 105 KSGDFDYRKITTKHIRSGVE----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
           K  D  + ++  + IR   E     +     +   +L  ++ + + A ++ Y        
Sbjct: 156 KVSDLAFCQLNEQFIREFQEFVVIEKGLGVQTVRHYLAILKKICRIAFKEGYSDKYYFEH 215

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP-----RLAFEFLLYSGLRCSDSCRAGVQ 215
            + PK+K    R  +KED ++ +     G +P     R  F F  Y+G    D       
Sbjct: 216 YKLPKQKETAPRALSKEDFEKIRDIELTGCRPEHSIVRDMFLFACYAGTSYVDVVAITPD 275

Query: 216 HLQNN-----IFSIKTQKTGTIITVELPDGFMKLLAM-TPIGKETFFINNDKQKMNATQF 269
           +L  +         +  K G +  V+L    + L+       + T F     Q       
Sbjct: 276 NLSRDDNGALWLKYRRGKNGQLSRVKLLPEAVALIEKYRDETRATLFPVIPYQ--TLKWC 333

Query: 270 SIWFKAKATKAGVNKSAHGVRKFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADR 328
               K KA   G   S H  R   +T+   + G     +    G   +   + Y +    
Sbjct: 334 LTSIKIKADIKG-RLSYHMGRHSFSTLMTLENGVPIETVSKMLGHADIRTTQVYAR-VTP 391

Query: 329 IRLGIKNSRRISSVVD 344
            +L     + I +  D
Sbjct: 392 KKLFEDMDKYIEATKD 407


>gi|315651061|ref|ZP_07904095.1| phage integrase [Eubacterium saburreum DSM 3986]
 gi|315486651|gb|EFU76999.1| phage integrase [Eubacterium saburreum DSM 3986]
          Length = 352

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 38/278 (13%), Positives = 86/278 (30%), Gaps = 35/278 (12%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
            K L+  Y +         +  +  ++    I+   G+     IT   +R  + + +   
Sbjct: 59  FKALVDVYLEDYKAKYKLSSYYVKEKNIQSHILPYFGETKINNITPNMVRDWLNNLQAKQ 118

Query: 131 SSA------IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP-WTKEDMQQFK 183
            +          L ++  +  +A +   +  NPC  V+  K  T+  +   T E  + F+
Sbjct: 119 GNTLSTETKNGILRNLSAILSYACKYYGLGSNPCKLVDALKDNTKKEKIFLTLEQYKAFR 178

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-----GTIITVE-- 236
           S  ++  + ++ F+ L ++GLR  +        +  +   +   KT     G+ +T    
Sbjct: 179 SNITD-IRDKVIFDLLFFAGLRRGELMALTFGDVDMDNKLLHISKTKGYAAGSYVTTPPK 237

Query: 237 ---------LPDGFMKLL-----AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
                    LP   +  +            +T   +     +               AG+
Sbjct: 238 TTTSNRVVTLPGFLIDEIKEYKEHCLDTDAKTSLFS-----IGKASIEYKKDKYLKLAGL 292

Query: 283 NK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
                H  R     +  + G     +    G   +   
Sbjct: 293 PYMRIHDFRHSHVALLVELGENPLLIANRLGHSDIKMT 330


>gi|314947728|ref|ZP_07851135.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0082]
 gi|313645708|gb|EFS10288.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0082]
          Length = 393

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 45/309 (14%), Positives = 97/309 (31%), Gaps = 40/309 (12%)

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKH 118
           Y    +    T + L +E+       S+  ++      Y + QI+   G      I+  +
Sbjct: 71  YGVKKKAPDMTFEDLYNEWITHQR-TSVKASTIAISVRYANNQILPAFGKLKLSNISVPY 129

Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS--VERPKRKTEGIRPWTK 176
            +  V+       S          + ++ V  +Y+  NP     + R K   +  + ++K
Sbjct: 130 CQKVVDEWHSKYESYDYMRKQTAQILRYGVAMQYIDNNPMEKTLLPRKKEYEKNRKFYSK 189

Query: 177 EDMQQFKSFWSE--GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--------------- 219
           E++      + +    +    F  L Y+G+R S+      + +                 
Sbjct: 190 EELNNLLDAFKDFGNMKQYAFFRLLAYTGMRKSEVLALQWKDIDTFNKELHVNKTLAVDE 249

Query: 220 -NIFSIKTQKTGTIITVELPD----------------GFMKLLAMTPIGKETFFINNDKQ 262
                I++ KT     V   D                 ++KL   T   ++  F      
Sbjct: 250 FGKVIIQSPKTRASRRVISLDTETLSILNNWKLQQKEEYLKLGYNTSSKEQHVFTTVKNT 309

Query: 263 KMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-E 320
                  + W +    K  + + + HG R   A++  +AG +   +    G +      +
Sbjct: 310 LYIPNTVNDWLRYILKKYNLPRITPHGFRHTHASLLLEAGESVKVVQQRLGHENSKVTLD 369

Query: 321 TYTKGADRI 329
            Y    +  
Sbjct: 370 IYAHITNNA 378


>gi|322433743|ref|YP_004215955.1| integrase family protein [Acidobacterium sp. MP5ACTX9]
 gi|321161470|gb|ADW67175.1| integrase family protein [Acidobacterium sp. MP5ACTX9]
          Length = 304

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 38/276 (13%), Positives = 83/276 (30%), Gaps = 34/276 (12%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH---IRSGVESRKHTP----------- 130
             ++ ++  ++ S               +IT      I   +   K +            
Sbjct: 14  KKVSDDTLAAYRSDLKHFGLFLATEHVDRITQIDHALIAKFITYMKISGKGKGGKVGLSD 73

Query: 131 SSAIQFLTSMRVLFKWAV-RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
           ++  + L ++   F +          NP        ++    +P  +  +++  S  +  
Sbjct: 74  ATIARRLAAVSSFFDYTRATTGRKLHNPIEDFSNRWKRNNKPKPVEEVVLEKLLSAITSP 133

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN------------IFSIKTQKTGTIITVEL 237
            + R+     L +GLR  +  +     +               I + + +  G  I   +
Sbjct: 134 -RDRVLINLFLATGLRLGEMEQLNRDTIVIEQHKGNGPNECFVIGTGEVEGKGGKIRTFM 192

Query: 238 -----PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS-AHGVRK 291
                   + + +          FI+  KQ+M+              AGV+ +  H +R 
Sbjct: 193 VSQQALIPYARYVNGRKDDHPALFISERKQRMSERAMQERLAHWCKVAGVSHTNVHRLRH 252

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
              T   +AG    +L    G  +V     Y K  D
Sbjct: 253 TYGTRLVNAGMDILQLKELMGHSSVATTLNYAKIMD 288


>gi|237816384|ref|ZP_04595377.1| tyrosine recombinase XerD [Brucella abortus str. 2308 A]
 gi|260546138|ref|ZP_05821878.1| tyrosine recombinase xerD [Brucella abortus NCTC 8038]
 gi|260755704|ref|ZP_05868052.1| integrase/recombinase xerD [Brucella abortus bv. 6 str. 870]
 gi|260758929|ref|ZP_05871277.1| integrase/recombinase xerD [Brucella abortus bv. 4 str. 292]
 gi|260884731|ref|ZP_05896345.1| tyrosine recombinase xerD [Brucella abortus bv. 9 str. C68]
 gi|297247261|ref|ZP_06930979.1| tyrosine recombinase XerD [Brucella abortus bv. 5 str. B3196]
 gi|88952695|sp|Q2YR40|XERD_BRUA2 RecName: Full=Tyrosine recombinase xerD
 gi|90140493|sp|P0C122|XERD_BRUAB RecName: Full=Tyrosine recombinase xerD
 gi|237788451|gb|EEP62666.1| tyrosine recombinase XerD [Brucella abortus str. 2308 A]
 gi|260096245|gb|EEW80121.1| tyrosine recombinase xerD [Brucella abortus NCTC 8038]
 gi|260669247|gb|EEX56187.1| integrase/recombinase xerD [Brucella abortus bv. 4 str. 292]
 gi|260675812|gb|EEX62633.1| integrase/recombinase xerD [Brucella abortus bv. 6 str. 870]
 gi|260874259|gb|EEX81328.1| tyrosine recombinase xerD [Brucella abortus bv. 9 str. C68]
 gi|297174430|gb|EFH33777.1| tyrosine recombinase XerD [Brucella abortus bv. 5 str. B3196]
          Length = 309

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 43/272 (15%), Positives = 92/272 (33%), Gaps = 32/272 (11%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHT---PSSAIQFLTS 139
              A N+  S+    +    +      +  +  T HIR  +++       P+S  + L++
Sbjct: 20  RGAAQNTLESYRRDLEAAAEELAAKGVNLAEAETGHIRMTLDTMAAQGFAPTSQARRLSA 79

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS------------ 187
           +R  F++   + +   +P   +  PK++    +  + E++ +     +            
Sbjct: 80  LRQFFRFLYSEGFRQDDPTGILYAPKKQKPLPKIMSVENVGKLLDRAALEANEAAEPGER 139

Query: 188 -EGSQPRLAFEFLLYSGLRCSDSCRAGVQ-HLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
            +  +     E L  +GLR S+     V     ++ F +   K      V L       L
Sbjct: 140 IKALRLHALLETLYATGLRVSELVGLPVTVARTDHRFLLVRGKGSKDRMVPLSRKARDAL 199

Query: 246 AM-------TPIGKETFFIN---NDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKF 292
                     P   +  ++    ++   +    F+   K  A +AG+  S    H +R  
Sbjct: 200 QKFLTLRDSLPGSDDNPWLFPAFSESGHLARQVFARELKGLAARAGLAASSASPHVLRHA 259

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324
            A+     GA    +    G   +   + YT 
Sbjct: 260 FASHLLQNGADLRTVQQLLGHADISTTQIYTH 291


>gi|319936530|ref|ZP_08010944.1| integrase [Coprobacillus sp. 29_1]
 gi|319808328|gb|EFW04888.1| integrase [Coprobacillus sp. 29_1]
          Length = 359

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 51/312 (16%), Positives = 97/312 (31%), Gaps = 54/312 (17%)

Query: 74  LISEY-RKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRSGVESRKHTP- 130
           L   Y +++A   ++  +++   E     +   K G      I     +      K    
Sbjct: 46  LCQLYAKQNAQRANVKKSTQKQREQLMRLLKEDKLGARSIDTIKPSDAKEWALRMKDKGF 105

Query: 131 --SSAIQFLTSMRVLFKWAVRQEYVAINPC--LSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             ++      S++  F  A++ + V  NP      E  +  T+     T+E  Q   SF 
Sbjct: 106 SYNTINNHKRSLKASFYIAIQDDCVRKNPFDFKLSEVLENDTKEKVALTEEQEQALLSFI 165

Query: 187 SEGSQPRLAFE---FLLYSGLRCSDSCRAGVQHLQ----------------NNIFSIKTQ 227
              +     ++    LL +GLR S+ C   +  +                    + I+T 
Sbjct: 166 KTDNVYHKYYDDVLILLKTGLRISELCGLTMADIDFTNEVVVIDHQLLKSKEQGYYIETP 225

Query: 228 KTGTIIT-VELPDGFMKLLAMTPIG------------KETFFINNDKQKMNATQFSIWF- 273
           KT + +  V L    ++                    K+  FIN+  +   A  ++  F 
Sbjct: 226 KTKSGVRNVPLSKETIQAFHRVIKKRSKIRSMEIDGHKDFLFINSKGKPKVAIDYTTLFV 285

Query: 274 -------KAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVD-------QA 319
                  K    +   + + H +R    T  A       +L    G   +         A
Sbjct: 286 RMVKKYNKHHKDRLLPHITPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISITMNWYAHA 345

Query: 320 ETYTKGADRIRL 331
              T  ++  RL
Sbjct: 346 SIDTAKSEVQRL 357


>gi|317490960|ref|ZP_07949396.1| phage integrase [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316920507|gb|EFV41830.1| phage integrase [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 368

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 40/267 (14%), Positives = 71/267 (26%), Gaps = 37/267 (13%)

Query: 84  WGSLAVNSRISFESY---FDQIIRKSGDFDYRKITTKHIRSGVESR-------------- 126
           W SL   +    +        I    GD    + +        E R              
Sbjct: 68  WDSLYGQTLADPKRMNAKLKIICDGVGDPLAIEFSAADFSVYREKRLKGEIITPEGVLLA 127

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           K  P +      ++  +F    +   + A NP       K     +      ++++    
Sbjct: 128 KVKPRTVNLEQLNLSAVFSTLKKLGHWPAPNPLTGFPMFKLHESELAFLDNLEIKRLLDS 187

Query: 186 WSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
            SE + P L    +  L +G R S++       +     S    K     TV +     +
Sbjct: 188 CSESTNPHLLTIAKICLSTGARWSEAETLEGHQVSKYRISFIKTKGKKNRTVPITQELYE 247

Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV----NKSAHGVRKFSATISAD 299
            L             N  +          F+    +AG+     +  H +R   A+    
Sbjct: 248 ELPK-----------NRGRLFTP--CRKAFERAVKRAGITLPDGQCTHVLRHTFASHFMM 294

Query: 300 AGATAHELMATYGWKTVDQAETYTKGA 326
            G     L    G   +     Y   A
Sbjct: 295 NGGNILVLRDVLGHADIRMTMIYAHFA 321


>gi|312888228|ref|ZP_07747805.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
 gi|311299259|gb|EFQ76351.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
          Length = 406

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 48/271 (17%), Positives = 89/271 (32%), Gaps = 32/271 (11%)

Query: 85  GSLAVNSRISFESYFDQ------IIRKSGDFDYRKITTKHIRSG----VESRKHTPSSAI 134
              A  +   +E+             K  D +   I  + I S        RK   +S +
Sbjct: 128 TEYAQGTADRYETSLKHTQAFLKWKYKVDDINIEGIDHEFIMSYDFYLRSERKCANNSTV 187

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ--- 191
           +++ + + +    +   ++  +P +  + PK K       TKE+++   +     S+   
Sbjct: 188 KYMKNFKKIILMCIDNGWLDKDPFIKYK-PKVKVVAREYLTKEELETMATKSYSSSRIEQ 246

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHL-----QNNIFSIKTQKTGTIITVELPDGFMKLLA 246
            +  F F  Y+GL   D  +     +              QKT T   + L     +++ 
Sbjct: 247 VKDIFIFCCYTGLAYIDVKQLKRSEIIKGIDGQQWIFTTRQKTNTASRIPLLTQASEIIQ 306

Query: 247 MTP-----IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS-A 298
                      +        QKMN+     + K  A   G+NK  + H  R   AT    
Sbjct: 307 KYKHHPECADMDKVLPVLSNQKMNS-----YLKEIADICGINKELTFHIARHTFATSVTL 361

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRI 329
             G +   +    G K +   + Y K  D  
Sbjct: 362 ANGVSIESVSKMLGHKNIRTTQHYAKILDSK 392


>gi|254696281|ref|ZP_05158109.1| site-specific tyrosine recombinase XerD [Brucella abortus bv. 2
           str. 86/8/59]
          Length = 307

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 43/272 (15%), Positives = 92/272 (33%), Gaps = 32/272 (11%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHT---PSSAIQFLTS 139
              A N+  S+    +    +      +  +  T HIR  +++       P+S  + L++
Sbjct: 18  RGAAQNTLESYRRDLEAAAEELAAKGVNLAEAETGHIRMTLDTMAAQGFAPTSQARRLSA 77

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS------------ 187
           +R  F++   + +   +P   +  PK++    +  + E++ +     +            
Sbjct: 78  LRQFFRFLYSEGFRQDDPTGILYAPKKQKPLPKIMSVENVGKLLDRAALEANEAAEPGER 137

Query: 188 -EGSQPRLAFEFLLYSGLRCSDSCRAGVQ-HLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
            +  +     E L  +GLR S+     V     ++ F +   K      V L       L
Sbjct: 138 IKALRLHALLETLYATGLRVSELVGLPVTVARTDHRFLLVRGKGSKDRMVPLSRKARDAL 197

Query: 246 AM-------TPIGKETFFIN---NDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKF 292
                     P   +  ++    ++   +    F+   K  A +AG+  S    H +R  
Sbjct: 198 QKFLTLRDSLPGSDDNPWLFPTFSESGHLARQVFARELKGLAARAGLAASSASPHVLRHA 257

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324
            A+     GA    +    G   +   + YT 
Sbjct: 258 FASHLLQNGADLRTVQQLLGHADISTTQIYTH 289


>gi|167760713|ref|ZP_02432840.1| hypothetical protein CLOSCI_03098 [Clostridium scindens ATCC 35704]
 gi|167661600|gb|EDS05730.1| hypothetical protein CLOSCI_03098 [Clostridium scindens ATCC 35704]
          Length = 354

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 39/257 (15%), Positives = 88/257 (34%), Gaps = 22/257 (8%)

Query: 85  GSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE---SRKHTPSSAIQFLTSM 140
             L  ++  + +   + +I+   G      IT   IR        + ++P+        +
Sbjct: 71  TRLREHTMRTKKYIVELKILPYFGKKRVNDITAADIRQWQNELIKKGYSPTYLKTINNQL 130

Query: 141 RVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199
             +F +AVR   +  NPC+      K K E +  WT E+ ++F           +AF  L
Sbjct: 131 SAIFNYAVRYYDLKSNPCVKAGSMGKSKAEEMDFWTGEEFRKFIDSIMNKRLSYMAFMTL 190

Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIKTQKT----------------GTIITVELPDGFMK 243
            ++G+R  +      + +     +I   K+                 +   + +P+    
Sbjct: 191 YWTGMRLGELLALTPKDVDLEKRTISITKSYQRLGRKDVITPPKTPKSKRVITIPEFLAA 250

Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGA 302
            +            ++    +         +    ++GV +   H +R   A++  + G 
Sbjct: 251 DIKDYMDSLYDLQEDDRLFPITKYYLEHEMQRGIKESGVKRIRLHDLRHSHASLLIELGF 310

Query: 303 TAHELMATYGWKTVDQA 319
           +  E+    G + V+  
Sbjct: 311 SPLEIANRLGHEKVETT 327


>gi|56961720|gb|AAW31811.1| IntD [Dichelobacter nodosus]
 gi|156254542|gb|ABU62756.1| IntD [Dichelobacter nodosus]
          Length = 384

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 55/336 (16%), Positives = 108/336 (32%), Gaps = 30/336 (8%)

Query: 10  FVTKERTRHGK-IIYYFRKGHGRRIRLPYPHES--------TFIPAYMSALTGSTPKREY 60
            +    T  GK   Y +R     R      +            I A +    G  P  E 
Sbjct: 25  GLYLYLTPAGKYWRYKYRFWGKERTLALGVYPEISLKKARNEHIKAKLLISNGRDPVEEK 84

Query: 61  INSPRKKPT----TLKWLISEYR--KSAHWGSLAVNSR--ISFESYFDQIIRKSGDFDYR 112
               R+       T   +  E+   +   W +     +   + E Y + +I   G     
Sbjct: 85  KRLKREIGGIYKNTFAEIAREWYALQRPKWKNKKHAQQVINTLEMYVNPLI---GHIPID 141

Query: 113 KITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
            +    I   ++S    P +A +    +  +F+ A+       NP  S+ +  +      
Sbjct: 142 SVLPLAIFDVLKSISDKPETANRVKQRISAVFEHAILTGRATHNPASSMPKIIKNQINHH 201

Query: 173 P-WTKEDMQQFKSFWSE--GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-- 227
           P   KE + +F S  +       +LA   L+ + +R  +  +     ++ N + I  +  
Sbjct: 202 PALPKERIPEFFSRLALYPNRTTQLALRLLILTFVRVGELRQGEWNEIRGNEWHIAAEKM 261

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGVNKS 285
           K      V L D  ++ L       +T      N  + M+    S+  K      G+   
Sbjct: 262 KMKRPHIVPLSDWALETLDELKTLSQTNLIITGNKNKMMSDNTLSVAMKRMGYT-GI-AV 319

Query: 286 AHGVRKFSATISADAGA-TAHELMATYGWKTVDQAE 320
            HG R  ++++  ++G      +      K  +   
Sbjct: 320 PHGFRSLASSVLNESGLWNPDAIERQLAHKEANTIR 355


>gi|257093411|ref|YP_003167052.1| integron integrase [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
 gi|257045935|gb|ACV35123.1| integron integrase [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
          Length = 340

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 43/311 (13%), Positives = 89/311 (28%), Gaps = 59/311 (18%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--- 128
           K L+ +  +S      ++ +  ++  +  + I   G    +++  + + + +        
Sbjct: 22  KRLLDQLSESIRLKHYSIRTEQAYRGWVRRFILFHGKRHPQEMGAREVETFLTHLAVEGR 81

Query: 129 -TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            + S+  Q  +++  L+K  +R +   ++    VE  K         T E++Q+      
Sbjct: 82  VSASTQNQAKSALLFLYKEVLRTDLPWLD---DVESAKSGKRLPVVLTPEEVQRLLG--P 136

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFM--- 242
                 L    L  +G+R  +  R  V+ +        ++  K        LP+  M   
Sbjct: 137 IEGTTGLILRLLYGTGMRIMECLRLRVKDVDFARREILVREGKGFKDRVTMLPEKLMAPL 196

Query: 243 --------------------------KLLAMTPIGK-----ETFFINN-----------D 260
                                      L    P        +  F+              
Sbjct: 197 GEHLARVKALHAADLSAGFGDVYLPWALERKYPNAAREWAWQYVFVAARRPVDPRSGAVR 256

Query: 261 KQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATY-GWKTVD 317
           +  + A             AGV    + H +R   AT   + G     +     G   V 
Sbjct: 257 RHHVEAQSIQRAMHQALRVAGVSKPATPHTLRHSFATSLLETGYDIRTVQELLVGHSDVS 316

Query: 318 QAETYTKGADR 328
               YT    R
Sbjct: 317 TTMIYTHVLKR 327


>gi|29349952|ref|NP_813455.1| transposase [Bacteroides thetaiotaomicron VPI-5482]
 gi|29341863|gb|AAO79649.1| transposase [Bacteroides thetaiotaomicron VPI-5482]
          Length = 308

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/271 (13%), Positives = 90/271 (33%), Gaps = 35/271 (12%)

Query: 87  LAVNSRISFESYFD-QIIRKSGDFD--YRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL 143
           +  ++  ++    +  I+   G+ D  + +I   ++   +ES   +  S    L  ++++
Sbjct: 21  VKQSTMAAYVLILENHILPTFGECDSLHEEIVQDYVLRKIES-GLSVKSVKDILIVLKMV 79

Query: 144 FKWAVRQEYVAINPCLSVERPKRKT-EGIRPWTKEDMQQFKSFWSEG-SQPRLAFEFLLY 201
            K+ V+ E++       ++ P   T + +   +  + ++  +      S   L     L 
Sbjct: 80  MKFGVKNEWMDYYE-WDIKYPTISTNKELEVLSVANHKKVLNHIQNHFSFAGLGIYISLC 138

Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV------------------------EL 237
           +GLR  + C      +     +I   +T   I +                         +
Sbjct: 139 TGLRIGEVCALKWSDINTMDGTITVNRTIERIYIIDGTQKHTELVINTPKTQNSCREIPM 198

Query: 238 PDGFMKLLAMTP--IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSA 294
                 ++      +  + + + N +       +  ++     K G+ K   HG+R   A
Sbjct: 199 TKELFAMMKPLKKVVNDDFYILTNAEYPTEPRTYRNYYTKLMEKLGIPKLKYHGLRHSFA 258

Query: 295 TISADAGATAHELMATYGWKTVDQA-ETYTK 324
           T   +AG     +    G   +    + Y  
Sbjct: 259 TRCIEAGCDYKTVSVLLGHSNISTTLDLYVH 289


>gi|23098689|ref|NP_692155.1| hypothetical protein OB1234 [Oceanobacillus iheyensis HTE831]
 gi|22776916|dbj|BAC13190.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
          Length = 378

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 46/309 (14%), Positives = 95/309 (30%), Gaps = 49/309 (15%)

Query: 60  YINSPRKKPTTL--KWLISEYRKSAHWGSLAVNSRISFESYF--DQIIRK--SGDFDYRK 113
           Y+   ++   +    W  + Y  S         +  S   Y     +I      +     
Sbjct: 59  YLEPSKESFQSFLQHWFYTHYITSIK------RTTHSNRDYLIKKHLIEDNPFAEKAISD 112

Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMRVL---FKWAVRQEYVAINPCLSVERPKRKTEG 170
           ITT+ I      +     S        ++L   F  AV+   ++ NP ++   P+ +T+ 
Sbjct: 113 ITTEEIDYFYHYKLGKGYSTSYIRKMHQMLHLSFAQAVKWRKISYNPVVNTTPPRVQTKQ 172

Query: 171 IRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ------------ 218
           +  W+K+ ++QF    +   +  + F   +Y+G+R  +        +             
Sbjct: 173 VSIWSKDQVKQFLETSNL-ERLYILFLLAIYTGMRKGELLGLKWSDINMEKECIHIHRNL 231

Query: 219 ----NNIFSIKTQKT-GTIITVE----LPDGFMKLLAMTPIGKE----------TFFINN 259
               N  +   T KT  +   +     + D    +       KE                
Sbjct: 232 CYIQNQGYFFTTPKTVRSTRVIPISSLISDQLQCIKEKQQCEKELAGPSYEDNDLVICTA 291

Query: 260 DKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
             +  +    +  F+     A V K   H +R   A+I    G    ++ +  G  +   
Sbjct: 292 LGKVQDPRNVTRVFERCIKNANVPKIRFHDLRHTHASILISEGVDIVKVSSRMGHTSPKT 351

Query: 319 A-ETYTKGA 326
             + Y    
Sbjct: 352 TLDIYAHVV 360


>gi|330466299|ref|YP_004404042.1| integrase family protein [Verrucosispora maris AB-18-032]
 gi|328809270|gb|AEB43442.1| integrase family protein [Verrucosispora maris AB-18-032]
          Length = 376

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 56/156 (35%), Gaps = 13/156 (8%)

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-----ELPDGFMKLL 245
           + R+  E L  +G+R S++C   V  + +    ++ +  G    V            + L
Sbjct: 214 RDRVLLELLYGTGVRVSEACGIDVADIDHGRRVVRVRGKGGRERVVPYGSPAQRALDEWL 273

Query: 246 AMT------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISA 298
                    P  ++   +     ++N T       A A   G+ +   H +R  +AT   
Sbjct: 274 RRGRPVLVVPGSRDALLLGVRGGRLNPTTARQIVGAYAQATGLPRIGPHALRHSAATHLL 333

Query: 299 DAGATAHELMATYGWKTVDQAETYTK-GADRIRLGI 333
           + GA    +    G  ++   + YT    DR+R   
Sbjct: 334 EGGADLRAVQELLGHSSLASTQVYTHVSVDRLRAAY 369


>gi|206580182|ref|YP_002239994.1| site-specific recombinase, phage integrase family [Klebsiella
           pneumoniae 342]
 gi|206569240|gb|ACI11016.1| site-specific recombinase, phage integrase family [Klebsiella
           pneumoniae 342]
          Length = 387

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 40/242 (16%), Positives = 85/242 (35%), Gaps = 22/242 (9%)

Query: 103 IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAV-RQEYVAINPCLSV 161
           ++         +         + R+ + ++  Q L+ +R L + A     ++   P   +
Sbjct: 116 LQVWESKRDAAVRKGKPVPEYKPRQVSQATKAQHLSFIRSLLRAAANDWGWIKTAPV--I 173

Query: 162 ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN- 220
           +  K  ++ IR  T+E+ ++      E  +P + F     +GLR S+      Q +    
Sbjct: 174 KTRKPISKRIRWLTREEAERLIECMPESIKPVVIFALA--TGLRRSNIIGLEWQQVDMQR 231

Query: 221 ---IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF-FINNDKQKMNATQFSIWFKAK 276
                + +  K G  I V L D   ++L         + F++   +       +   +  
Sbjct: 232 KVAWVNPENAKAGKAIGVALNDTACRVLRDQIGKHSRWVFVHTTAKHRPDGTLTPAVRKM 291

Query: 277 AT------KAGVNK------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
                   +AG+ K        H +R   A+    +G     L    GW++++    Y  
Sbjct: 292 RVDDNNAWRAGLKKAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAH 351

Query: 325 GA 326
            A
Sbjct: 352 LA 353


>gi|103485933|ref|YP_615494.1| phage integrase [Sphingopyxis alaskensis RB2256]
 gi|98976010|gb|ABF52161.1| phage integrase [Sphingopyxis alaskensis RB2256]
          Length = 334

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 43/302 (14%), Positives = 96/302 (31%), Gaps = 44/302 (14%)

Query: 75  ISEYRKS--AHWGSLAVNSRISFESYF--------DQIIRKSGDFDYRKITTKHIRSGVE 124
           +S Y +       +++ ++  ++ + F        D++ R+  D +   + T  I + ++
Sbjct: 8   LSAYLREHLPRERAVSPHTVKTYANCFVLLVQFAADRLKRRPTDLEVEDLGTDMIMAFLD 67

Query: 125 S----RKHTPSSAIQFLTSMRVLFKW-------AVRQEYVAINPCLSVERPKRKTEGIRP 173
                R     +    L ++R  F++        + Q         ++   K     I  
Sbjct: 68  HVEIGRGSCVRTRNGRLAAIRSFFRYIEYRIPACLDQALR----VRAIPTKKTDKALIDY 123

Query: 174 WTKEDMQQFKS----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF---SIKT 226
             + +++            G++ R         GLR S+     +    +       I  
Sbjct: 124 LDRAEIKALLDTPDPRTRLGTRDRAMLHLTYAGGLRVSELVTLQLGDFPDRSLSTMHIMG 183

Query: 227 QKTGTIITVELPD---GFMKLLAMTPIGKET-FFINNDKQKMNATQFSIWFKAKATKA-- 280
           +     +     +        LA+ P  + T  F+N + Q M    F+         A  
Sbjct: 184 KGRRERVLPLWKETQIALRAWLAIRPQVEVTEIFLNANGQPMTRDGFAFRLAEHVKTAAT 243

Query: 281 ------GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIK 334
                 G   + H +R   A  +  A     ++    G  ++   ETY +     +L I 
Sbjct: 244 KQPSILGKRVTPHVLRHSCAMHTLAATGDIRKVALWLGHASIQSTETYLRADPEEKLQIL 303

Query: 335 NS 336
            +
Sbjct: 304 AA 305


>gi|313114033|ref|ZP_07799587.1| site-specific recombinase, phage integrase family [Faecalibacterium
           cf. prausnitzii KLE1255]
 gi|310623653|gb|EFQ07054.1| site-specific recombinase, phage integrase family [Faecalibacterium
           cf. prausnitzii KLE1255]
          Length = 315

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 48/303 (15%), Positives = 101/303 (33%), Gaps = 17/303 (5%)

Query: 20  KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYR 79
           K+  Y  +GHG+++ + Y                +    +Y ++P         L+  Y+
Sbjct: 3   KVTVYDAEGHGKQVPIDYAETEE---------QANIILAQYNDNPWSIDRNKVTLVDLYQ 53

Query: 80  KSAH--WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFL 137
           + A      +   SR + +S F    +  G   YR I    ++  +++     S+  Q  
Sbjct: 54  RWAKIKLPKMGQASRGAMKSAFKHCQKYYG-MKYRSIRAYQMQDCIDNCGRGYSTQAQIK 112

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE 197
                L ++A   + ++         P        P+T E +        E         
Sbjct: 113 VLWGHLDEFAFECDIISKMYSQLTTAPPVPETSRMPFTPEQIAALWEIQDEPWVD--TVL 170

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-KT--GTIITVELPDGFMKLLAMTPIGKET 254
             LY+G R  +      + +     + +   KT  G    V +    +  +         
Sbjct: 171 VFLYTGFRLMELLNMQTEQVDLQQKTFQGGIKTAAGKGRIVPIHPKILPFVQAWAQHGHK 230

Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWK 314
           + +  D +K++  ++   +     + G +K+ H  R    T   +A A    +    G K
Sbjct: 231 YLLTADGKKLSKQKYYECWAEVMDRIGADKTPHEARHTFETSLDNAKANRKCIDLLMGHK 290

Query: 315 TVD 317
           + D
Sbjct: 291 SKD 293


>gi|262382217|ref|ZP_06075355.1| integrase [Bacteroides sp. 2_1_33B]
 gi|262297394|gb|EEY85324.1| integrase [Bacteroides sp. 2_1_33B]
          Length = 310

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 41/274 (14%), Positives = 93/274 (33%), Gaps = 30/274 (10%)

Query: 90  NSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLF 144
           ++  S++   +  +R  G          K   +  ++ + ++  T ++   ++  +R ++
Sbjct: 24  STAKSYQDALNSFMRFCGLEVIPYIYVNKENLRRYQAFLLNKGCTWNTVSTYMRRIRCVY 83

Query: 145 KWAVRQEYVAINP------CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEF 198
             AV +      P         +E  KRK    +   +  M        E  + R A   
Sbjct: 84  NMAVEEGLAPYIPYLFKGVFTGIES-KRKKALPQDLLRSLMTAPLD-DPELRKTRQALCL 141

Query: 199 LL-YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP----DGFMKLLAMTPIGKE 253
           +  + G+   D      ++++  +   K QKTGT + +E+     +   +L +       
Sbjct: 142 MFQFCGMAFVDFAHLKKENVRGGVLEYKRQKTGTPMLIEVQSTAWESLRELSSDVGKDSP 201

Query: 254 TFFINNDKQKMNATQ----------FSIWFKAKATKAG--VNKSAHGVRKFSATISADAG 301
             F      K+              F+   K  A   G  +  +++ +R   A I  +  
Sbjct: 202 YLFPFLKGIKVGKEAYKEYTSALAHFNRNLKRLARACGVSIPITSYSIRHSFAMILKEQD 261

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335
                +    G K++   + Y K     ++   N
Sbjct: 262 VPIEMISELLGHKSIKTTQIYLKSFSLEKMSAVN 295


>gi|237721192|ref|ZP_04551673.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4]
 gi|229450027|gb|EEO55818.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4]
          Length = 419

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 45/288 (15%), Positives = 95/288 (32%), Gaps = 37/288 (12%)

Query: 86  SLAVNSRISFESYFDQIIR------KSGDFDYRKITTKHIRSGVESRK----HTPSSAIQ 135
           +   +S   + + +D ++R      K  D  +  +    I       +      P + + 
Sbjct: 139 NRTESSLNGYRNSYDHLVRFLQSQYKLSDIPFAALDRSFIEKFDLHLRTECHLAPGTIVN 198

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----Q 191
               ++ +   A+    +   P +  E P       +  T E++ +  +     S     
Sbjct: 199 LTVRLKTIVGEAIADGIITAFPFVGYE-PTHPQPEQKYLTTEELNRIMTT-PLHSRTLYH 256

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHL---QNNIFSIKTQKTGTIITVELP-DGFM----- 242
            R  F F  Y+G+  SD C    ++L   ++ I+ I++ +  T +  E+P          
Sbjct: 257 VRDLFLFSCYTGIPYSDMCMLTNENLSLAEDGIWWIRSSRKKTGVDFEIPLMELPLHIIE 316

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATIS-AD 299
           K   + P GK     +N       +  + + K  A   G+ +    H  R   AT     
Sbjct: 317 KYRDVAPEGKLLPMYSN-------SSLNHYLKQIAVLCGIERKLVFHTARHTYATEITLS 369

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
            G     +    G   +   + Y K  D       +++ +   +    
Sbjct: 370 HGVPLETVSKMLGHSRIGTTQLYAKVTDNK--IDTDTKALDKKIAERF 415


>gi|302384624|ref|YP_003820446.1| integrase family protein [Clostridium saccharolyticum WM1]
 gi|302195252|gb|ADL02823.1| integrase family protein [Clostridium saccharolyticum WM1]
          Length = 396

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 46/262 (17%), Positives = 87/262 (33%), Gaps = 36/262 (13%)

Query: 100 DQIIRKSGDFDYRKIT-TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158
           D+ I K    D +     K  R+ +++   T        + +  LF +A+  E V  NP 
Sbjct: 119 DKSIVKIPIKDLKATDFIKFFRAMLKAESMTRKRFNDAKSVLNGLFYYAIEIETVTHNPI 178

Query: 159 LSVE----RPKRKTEGIRPWTKEDMQQFKSFW-SEGSQPRLAFEFLLYSGLRCSDSCRAG 213
             +     + K        +T  + Q    +         LA +   Y   R ++     
Sbjct: 179 KEINFRQFQFKPVNGKKEIFTLAERQLLLDYLEPINDIFSLAVQLDFYLICRSAELRALR 238

Query: 214 VQHLQNNIFSIKTQ------------------------KTGTI---ITVELPDGFMKLLA 246
              ++ +I  I+TQ                        K  T      + L DG  ++L 
Sbjct: 239 WTDIEGDIIKIQTQLLDDQTMNDDLTFNPRTYENVTHIKGNTDYGYRYMPLTDGAKQVLK 298

Query: 247 MTPI--GKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGAT 303
                   + F + N+ +++    F+   KA     G+  +++H +R   A++    G  
Sbjct: 299 RIKDINPDDEFILMNEGKQLTTITFNRHLKAYCEAVGIEPRTSHKIRFTVASLLYKNGVP 358

Query: 304 AHELMATYGWKTVDQAETYTKG 325
           A  L    G  T+     Y + 
Sbjct: 359 ATTLQRLLGHSTLAMTLHYLRD 380


>gi|293395226|ref|ZP_06639512.1| shufflon-specific DNA recombinase [Serratia odorifera DSM 4582]
 gi|291422403|gb|EFE95646.1| shufflon-specific DNA recombinase [Serratia odorifera DSM 4582]
          Length = 345

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 45/287 (15%), Positives = 94/287 (32%), Gaps = 33/287 (11%)

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRS 121
           ++  +T+K L   Y +     +     R  ++S  ++++   +  G     KIT++++ +
Sbjct: 54  KRSESTVKALSLVYLEEVLTKNGKP--RGGYDSIRNRLVNLDKHFGSTSLEKITSENVAT 111

Query: 122 G-VESRKHTPSSAIQF-LTSMRVLFKWA-VRQEYVAINPCLSVERPKRKTEGIRPWTK-- 176
             VE  K   +  ++  L  +    +WA   +     +    V  P+      +  T   
Sbjct: 112 YKVERLKKAANGTVRLELQLLSRFLRWAASEKGVACNDVVKPVRLPEAGKPRDKILTPLQ 171

Query: 177 -----EDMQQFKSFWSEG----SQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSI- 224
                E ++  +S  S G    S+ +        + +R  +           +  +  + 
Sbjct: 172 YQMILERVETCRSKLSGGLQGMSEAKAIIILAWETAMRRGEILALTPAMIDFRQRVIHLA 231

Query: 225 -KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK-----MNATQFSIWFKAKAT 278
               K      V L    + LL     GKE        +      +     S  F+    
Sbjct: 232 DHQTKNAEARDVPLSSTALDLLKSLCEGKE----EERYRHTKLFSLRPYSVSQAFRRACR 287

Query: 279 KAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +A +     H +R    T  A+ G    +L    G K +     Y+ 
Sbjct: 288 EARIEGVCFHSLRHTCITRYAEKGLNTIQLQCISGHKDITMLARYSH 334


>gi|319654079|ref|ZP_08008171.1| hypothetical protein HMPREF1013_04791 [Bacillus sp. 2_A_57_CT2]
 gi|317394272|gb|EFV75018.1| hypothetical protein HMPREF1013_04791 [Bacillus sp. 2_A_57_CT2]
          Length = 368

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 38/291 (13%), Positives = 99/291 (34%), Gaps = 49/291 (16%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRKI---TTKHI--RSGVESRKHTPSSAIQFLTSM 140
             A +++  +     Q +    +  +  +     +H+         K+  ++ ++  + +
Sbjct: 61  KRAESTKKEYFRDLKQFLEYINEKGFSSLHSLNPEHLLQYQRYLENKYKKTTLLRKSSVI 120

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEG--IRPWTKEDMQQFKSFWSEGS-QPRLAFE 197
           +  F++   +E +  +    ++RPK  +E    R     +++Q  +++ +        F 
Sbjct: 121 KHFFRYLANKEILLQDITRQMKRPKVNSEELVNRDLFDHEVKQILAYFKKTDWFAYTLFY 180

Query: 198 FLLYSGLRCSDSCRAGVQHLQ-----NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252
            L+ +G+R ++   A   + +     ++ F     K G +  + + +  ++++      K
Sbjct: 181 LLVSTGMRINELATAKWSNFRYEPSVDHFFLKVMGKGGKVRDIIIFNDVLEVVKENRRRK 240

Query: 253 E-----------TFFINNDKQKMNATQFSIWFKAKATKAGVN------------------ 283
                        FF   + +  + T  S  F      A ++                  
Sbjct: 241 SLNTQIGTFCGTAFFPKANGKHYHTTYLSNEFTRVVNTAPLDFIQARFEREKEALEGGQS 300

Query: 284 ----KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
                + H  R ++A    D G     L    G  ++   E Y +   R R
Sbjct: 301 IKYRITPHTCRHYTAAYYMDNGIDPKALQDMLGHSSLMTTERYLR---RKR 348


>gi|258516801|ref|YP_003193023.1| site-specific integrase [Desulfotomaculum acetoxidans DSM 771]
 gi|257780506|gb|ACV64400.1| site-specific integrase [Desulfotomaculum acetoxidans DSM 771]
          Length = 370

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 51/313 (16%), Positives = 90/313 (28%), Gaps = 54/313 (17%)

Query: 17  RHGKIIYY--FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           + GK  +      G      +      TF  +  +A       +  +      P T   L
Sbjct: 14  KKGKDKWEIVVEAGKDSATGIRKRISKTFNGSEKAAKNELDRIKNEVKQATYIPPTKMNL 73

Query: 75  ISEYRKSAHWGS-----LAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH 128
             +Y +   W       LA  +   ++   D +II   G     ++    ++      K 
Sbjct: 74  -QQYLE--KWMGFQKDKLAPRTYQRYQQIIDLRIIPALGKIILEELKPMQLQEFYAKLKK 130

Query: 129 TPS-----------SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
           +P            + +     +RV    AV+ + +  NP  +V+ PK+K          
Sbjct: 131 SPRLDGKEGTLSLDTIMYHHRILRVALNQAVKWQMIGRNPADAVDTPKQKRNQFTALDGN 190

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----------------NNI 221
             ++     +EGSQ  LA    L +GLR  +      + +                    
Sbjct: 191 QTKRLLEL-AEGSQHYLALLLALSTGLRRGEIYGLRWKDIDFHHKTLTVNQAVKYLPGQP 249

Query: 222 FSIKTQKTG-TIITVELP--------------DGFMKLLAMTPIGKETFFINNDKQKMNA 266
                 K   +  T+ LP              D   K L       +      D    + 
Sbjct: 250 LIFGPPKNDFSRRTIPLPQKVFDAFQERKIAQDKMKKRLEYAYSDNDLILCQEDGSPTHP 309

Query: 267 TQFSIWFKAKATK 279
              S WF+    K
Sbjct: 310 DTISSWFQKFINK 322


>gi|228969308|ref|ZP_04130166.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis serovar sotto str. T04001]
 gi|228790386|gb|EEM38118.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis serovar sotto str. T04001]
          Length = 227

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 32/223 (14%), Positives = 65/223 (29%), Gaps = 34/223 (15%)

Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK---SFWSEGSQPRLAFEFLLYSGLRCS 207
           E +  NP      PKR+ + +  W+ + +  F          ++  + F   L +G+R  
Sbjct: 2   ELIKDNPTTGTTLPKRQRKEMNVWSLDQVNYFLTESKNIKRLTRCYITFAMSLLTGMRQG 61

Query: 208 DSCRAGVQHL--QNNIFSIKT-----------QKTGTIIT-VELPDGFMKLLAMTP---- 249
           +      + +  + N+  +K             K  + +  + +PD  +  L        
Sbjct: 62  EIMGLRWKDINFERNVIYVKQTLTQAAEIKVGAKNASSVRSIHIPDKLVNELKSYHKTVI 121

Query: 250 ----------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISA 298
                        +        + M        F     K G+ K   H +R    T+  
Sbjct: 122 EERLFHGKDYADNDLVICTRIGKPMIPRNLRKEFYNLTEKLGLPKIRFHDLRHTHTTMLI 181

Query: 299 DAGATAHELMATYGWKTVDQA-ETYTKGA-DRIRLGIKNSRRI 339
                   +    G   +     TY     D  +L  +   +I
Sbjct: 182 QQNVNVKLIADRLGHSDITTTLNTYIHVLPDMQKLVSEKLDKI 224


>gi|314938400|ref|ZP_07845691.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133a04]
 gi|314942325|ref|ZP_07849173.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133C]
 gi|314951459|ref|ZP_07854509.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133A]
 gi|314993130|ref|ZP_07858516.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133B]
 gi|314996013|ref|ZP_07861091.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133a01]
 gi|313589767|gb|EFR68612.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133a01]
 gi|313592370|gb|EFR71215.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133B]
 gi|313596416|gb|EFR75261.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133A]
 gi|313598942|gb|EFR77787.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133C]
 gi|313642298|gb|EFS06878.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133a04]
 gi|315579058|gb|EFU91249.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX0630]
          Length = 393

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 45/309 (14%), Positives = 97/309 (31%), Gaps = 40/309 (12%)

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKH 118
           Y    +    T + L +E+       S+  ++      Y + QI+   G      I+  +
Sbjct: 71  YGVKKKAPDMTFEDLYNEWITHQR-TSVKASTIAISVRYANNQILPAFGKLKLSNISVPY 129

Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS--VERPKRKTEGIRPWTK 176
            +  V+       S          + ++ V  +Y+  NP     + R K   +  + ++K
Sbjct: 130 CQKVVDEWHSKYESYDYMRKQTAQILRYGVAMQYIDNNPMEKTLLPRKKEYEKNRKFYSK 189

Query: 177 EDMQQFKSFWSE--GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--------------- 219
           E++      + +    +    F  L Y+G+R S+      + +                 
Sbjct: 190 EELNNLLDAFKDFGNMKQYAFFRLLAYTGMRKSEVLALQWKDIDTFNKELHVNKTLAVDE 249

Query: 220 -NIFSIKTQKTGTIITVELPD----------------GFMKLLAMTPIGKETFFINNDKQ 262
                I++ KT     V   D                 ++KL   T   ++  F      
Sbjct: 250 FGKVIIQSPKTRASRRVISLDTETLSILNNWKLQQKEEYLKLGYNTSSKEQHVFTTVKNT 309

Query: 263 KMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-E 320
                  + W +    K  + + + HG R   A++  +AG +   +    G +      +
Sbjct: 310 LYIPNTVNDWLRYILKKYNLPRITPHGFRHTHASLLLEAGESVKVVQQRLGHENSKVTLD 369

Query: 321 TYTKGADRI 329
            Y    +  
Sbjct: 370 IYAHITNNA 378


>gi|307565760|ref|ZP_07628229.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
 gi|307345586|gb|EFN90954.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
          Length = 431

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 51/290 (17%), Positives = 98/290 (33%), Gaps = 25/290 (8%)

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLT 138
           R    + +L+ + +   E   D+ ++        +   +  R  ++ R    ++   +L 
Sbjct: 123 RAEGTYLNLSHSDKNLREFVEDKGLQDISISTITEDLFEEYRFFLKKRGLKGTTINNYLC 182

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WSEGSQPRLA 195
            +  L   AV +  +  NP    +  K + + IR   K ++ +  +     SE    RL 
Sbjct: 183 WLSRLMFRAVSKRIIRCNPFEHAKYEKEEKK-IRFLQKSEVAKLATMKMNDSEAELARLM 241

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQ---NNIFSIK--TQKTGTIITVELPDGFMKLLAM--- 247
           F F   +GL  +D       H+Q        I+   QKT     V L      ++     
Sbjct: 242 FVFSCLTGLAIADMETLQYGHIQTAAGGRKYIRKERQKTKVEFVVPLHPIAEAIIRHCWE 301

Query: 248 TPIGKETFFINNDKQ-----KMNATQFSIWFKAKA---TKAGVN--KSAHGVRKFSATIS 297
              G E      +K        +    S+  K         G+    S H  R    T+S
Sbjct: 302 EQEGNEELQTVKEKGDSLVFPRSC-SRSVMGKNLCIVGKACGIRERLSYHMARHTFGTMS 360

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
             AG     +    G  ++   + Y +  DR     ++  R+ +   + +
Sbjct: 361 LSAGIPIESIAKMMGHASISSTQIYAQVTDRK--ISEDMDRLIAKQSAKE 408


>gi|253563307|ref|ZP_04840764.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5]
 gi|251947083|gb|EES87365.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5]
          Length = 394

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 41/279 (14%), Positives = 91/279 (32%), Gaps = 22/279 (7%)

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
           + + ++      E+ +      L   +   + + F+ +     +F    I+   I    +
Sbjct: 101 KPENSSFYDYYLEFVERKRKEGLNPETIRVYMTTFNVLKEFKAEFRISDISLSFIEQFDD 160

Query: 125 SRKH----TPSSAIQFLTSMRVLFKWAVRQEYVAINP-------CLSVERPKRKTEGIRP 173
             +     +P        + R +     +      NP          V+        +  
Sbjct: 161 HMREVNGNSPGGRNPKHKNFRTVILDIQKHNIPVDNPYRWFKIPSSEVKEVYLDKSELHT 220

Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ--KTGT 231
              E  ++F     E  +    ++F  + GLR SD+     + +      I+    KT T
Sbjct: 221 -IMEYTERFDKSSKEY-KILKMYQFSCFCGLRFSDTMDLRWKDIDFANCLIRRMMIKTKT 278

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMN---ATQFSIWFKAKATKAGVNK--SA 286
            +   L      +L       +   I +D++          +   + +A  AG++K  + 
Sbjct: 279 EVITPLFPMARDILMERSNNGK--LIGSDEKVFYNFAEPTVNQALRKEAKLAGIDKHITY 336

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           H  R   AT+        +++    G K+V+  + Y K 
Sbjct: 337 HSSRHTFATLLVIDNVDIYKISKYLGHKSVNMTQRYLKY 375


>gi|171472293|gb|ACB46849.1| integrase [Pseudomonas stutzeri]
          Length = 320

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 43/313 (13%), Positives = 99/313 (31%), Gaps = 58/313 (18%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129
           L+ + R+       ++ +   +  +  + IR       +++  + I + +     +R  +
Sbjct: 7   LLDQMRERIRLKHYSIRTERVYCEWVKRFIRFHQYRHPQEMGAQEIEAFLTELAVARNVS 66

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            S+  Q L+++  L+K  +    + +     V R K+        T E+++   +     
Sbjct: 67  ASTQNQALSALLFLYKEVLS---IDLPWLADVVRAKKPQRLPVVLTIEEVRSALAQLE-- 121

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAM 247
           S+P L +  L  +G+R  ++ R  V+ +    +   I+  K        LP   ++ L  
Sbjct: 122 SEPWLVYSLLYGTGMRLMEALRLRVKDVDFSRHEILIRDGKGMKDRVTMLPRSLVQPLRR 181

Query: 248 -------------TPIGKETFFINN--------------------------------DKQ 262
                             + +                                     + 
Sbjct: 182 HLAVVKAIHDSEREQGRGDVWLPFALARKYPKAPKEWGWQYVFPASGLSVDPRSGVVRRH 241

Query: 263 KMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
            ++  +    FK     A +    + H +R   AT   ++G     +    G   V    
Sbjct: 242 HLDEKRIQRAFKRAVRGASIVKPATPHTLRHSFATHLLESGQDIRTVQELLGHSDVKTTM 301

Query: 321 TYTKGADRIRLGI 333
            YT   +R  L +
Sbjct: 302 IYTHVLNRGGLSV 314


>gi|16764254|ref|NP_459869.1| integrase [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|169257156|ref|YP_001700534.1| putative bacteriophage integrase [Salmonella phage Fels-1]
 gi|16419401|gb|AAL19828.1| putative Fels-1 prophage integrase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
          Length = 441

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/248 (13%), Positives = 79/248 (31%), Gaps = 48/248 (19%)

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
             +  +  + ++   +L  +  LF++A R  Y+  NP   +   KR      P ++E+  
Sbjct: 159 RELAPKGRSVATVNSYLGVVSGLFQFAARNGYIPQNPFNGITMLKRAKAEPDPLSREEFA 218

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI---------------- 224
           +         Q +  +   +Y+G+R  + C    + +     ++                
Sbjct: 219 RLIDAC-HHQQIKNLWSLAVYTGMRHGELCALAWEDIDLKAGTLIVRRNYTQAKEFTLPK 277

Query: 225 KTQKTGTIITV--ELPDGFMKLLAMTPIGKETFF---INNDKQKMNAT------------ 267
               T  +I +     D      + T + K+      +    +    +            
Sbjct: 278 TQAGTDRVIHLVQPAIDALKSQASFTKLSKQHKIEVKLREYGRTKTHSCTFVFNPQITDR 337

Query: 268 -----------QFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKT 315
                        +  +++   +AG+ ++ A+  R   A  +  AGA  + + +  G   
Sbjct: 338 SGKSKAHYAAPSLNRIWESALRRAGLRHRKAYQSRHTYACWALAAGANPNFIASQMGHSN 397

Query: 316 VDQAETYT 323
                 YT
Sbjct: 398 AQMV--YT 403


>gi|261212131|ref|ZP_05926417.1| phage integrase family protein [Vibrio sp. RC341]
 gi|260838739|gb|EEX65390.1| phage integrase family protein [Vibrio sp. RC341]
          Length = 403

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 48/303 (15%), Positives = 104/303 (34%), Gaps = 26/303 (8%)

Query: 55  TPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRK 113
             ++    +  K   T      ++ +      +A ++R    S +  ++  K G+    +
Sbjct: 83  AKEKARAKARTKDAETFGAWAQKWLRGYQ---MADSTRDMRRSVYARELEGKFGNQKLTE 139

Query: 114 ITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE--RPKRKTE 169
           IT + +R+  ++   +  P++A+     +  +++WA+ +     NP   V      R   
Sbjct: 140 ITHEDLRALTDAIVERGAPATAVHTRDIVLQVYRWAIERGQKVENPADLVRPASIARFEP 199

Query: 170 GIRPWTKEDMQ-QFKSFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK- 225
             R  T  ++   ++     G+ P  R A + LL + +R S+   A    +  +      
Sbjct: 200 RDRTLTPAEIGLMYRYMEKVGTTPSIRAAVKLLLLTMVRKSELTNATWSEINFSEALWTI 259

Query: 226 ---TQKTGTIITVELPDGFMKLLAMTPI---GKETFFINNDKQ--KMNATQFSIWFK--- 274
                K      V L    M +L        G +    +       M++   +       
Sbjct: 260 PKERMKRRNSHLVFLSRQAMDILIALKTFAGGSDYILPSRYDSDAPMSSATMNRVLALTY 319

Query: 275 AKATKAGVNKS---AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
             A K G + S    H +R+ ++T+  +AG     +      +       Y K   R + 
Sbjct: 320 KAAQKDGQSLSKFGPHDLRRTASTLLHEAGYNTDWIEKCLAHEQKGVRAVYNKAEYREQR 379

Query: 332 GIK 334
              
Sbjct: 380 AAM 382


>gi|225575527|ref|ZP_03784137.1| hypothetical protein RUMHYD_03619 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037277|gb|EEG47523.1| hypothetical protein RUMHYD_03619 [Blautia hydrogenotrophica DSM
           10507]
          Length = 356

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 46/303 (15%), Positives = 98/303 (32%), Gaps = 32/303 (10%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVES--- 125
           T +  +  Y +      L  +S I  +   + +++   G     +IT  ++R    +   
Sbjct: 57  TFENFVKIYNEDMK-HRLREHSFIQKQYIINTKLLPFFGKLPVSQITPAYVRKWQNALIA 115

Query: 126 ---RKHTPSSAIQFLTS---MRVLFKWAVRQEYVAINPCLSVERP-KRKTEGIRPWTKED 178
              +K  P S     T    +  +  +AVR   +  NPC       K   + ++ WT ++
Sbjct: 116 YRDKKDKPYSETYLRTINNQLSAIMNYAVRYYDLKENPCRKAGSIGKGHADEMQFWTTDE 175

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---------------NNIFS 223
            ++F    S+    R  F  L Y+GLR  +        +                N    
Sbjct: 176 FKRFLEKISDKPPARAGFLILYYTGLRIGELLALEYGDIDFDGCTINVNKSYQHINGKDV 235

Query: 224 IKTQKTGTIIT-VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
           +   KT   +  + +P+     +            ++         F            V
Sbjct: 236 VTPPKTPKSVRIISIPEFLRDEIKSYTERLYGLHKHDRIFPCTKHFFEHEIMRGTKDGEV 295

Query: 283 NK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRIS 340
            +   H +R   A++  + G +   +    G + V+    TY+      R   + + ++ 
Sbjct: 296 KRIRLHDIRHSHASLLIEMGFSPLAVADRLGHEKVETTLNTYSHLFPHKR--DEVAEKLQ 353

Query: 341 SVV 343
            + 
Sbjct: 354 KLK 356


>gi|291612849|ref|YP_003523006.1| integron integrase [Sideroxydans lithotrophicus ES-1]
 gi|291582961|gb|ADE10619.1| integron integrase [Sideroxydans lithotrophicus ES-1]
          Length = 330

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 47/308 (15%), Positives = 97/308 (31%), Gaps = 58/308 (18%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH----T 129
           L+ + R        ++ +   +  +  + I   G    + +    + + +         +
Sbjct: 15  LLDQVRDKIRVKHYSIRTETQYVQWIKRFILFHGKRHPKDMGAAEVEAFLTHLAVEGNVS 74

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            S+  Q L+++  L++  +  E   ++    V R K+         +E++        EG
Sbjct: 75  ASTQNQALSALLFLYREVLGMELPWLD---DVVRAKKPQRLPSVLNREEVSLVLERM-EG 130

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAM 247
           +   +A   L  +G+R  + CR  V+ +        I+  K        LP+  +K L  
Sbjct: 131 TYGLMAR-LLYGTGMRLMECCRLRVKDIDFRQREILIRDGKGAKDRVTMLPETLIKPLQE 189

Query: 248 TPIGKETFFINNDKQKMN--------------ATQFSIW--------------------- 272
             + +   F ++  + M               A Q  IW                     
Sbjct: 190 YLLKRRRLFEDDLSKGMTEVYLPDALARKYPNAAQEWIWQYVFPSGSYSVDPRSGRERRH 249

Query: 273 ----------FKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
                      K   T +G+ K  + H +R   AT   + G     +    G   V    
Sbjct: 250 HIDEKLLQRAMKKAVTASGITKFATPHTLRHSFATHLLEGGYDIRTVQELLGHSDVSTTM 309

Query: 321 TYTKGADR 328
            YT   ++
Sbjct: 310 IYTHVLNK 317


>gi|251770832|gb|EES51420.1| phage integrase family protein [Leptospirillum ferrodiazotrophum]
          Length = 299

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 41/290 (14%), Positives = 98/290 (33%), Gaps = 35/290 (12%)

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII----RKSGDFDYRKITT 116
           ++    + TTL      Y +         +++  +    ++I               I  
Sbjct: 7   VSRQEAEATTLSEAFDRYEREVS------STKKGYAREKERIRVWKKHPLVRRPLASIRG 60

Query: 117 KHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTEGIR 172
             + +  + R+ +  P++    L  +  LF  A ++  +    NP  +V +PK      R
Sbjct: 61  ADVAAYRDQRRQSVGPTTVRLELALLSHLFTIARKEWGMEGLANPVSAVRKPKPPQGRER 120

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTG 230
              + ++++  +       P       + +G+R S+        +       ++ T K G
Sbjct: 121 RLKEGELERILAASKSPVLP-AIIRLAIETGMRRSEIACVTWNDVDLKRRTLTLGTTKNG 179

Query: 231 TIITVELPDGFMKLLAMTPIG--------KETFFINNDKQKMNATQFSIWFKAKATKAG- 281
               V L    +++L+  P          K  +  +  +  +   +    ++ +  + G 
Sbjct: 180 DRRIVPLSKEAVRILSALPRRLDGKLWGIKPDWMTHGFRDALFRAR--KAYEKECKEKGT 237

Query: 282 -------VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
                  VN   H +R  + +   +      E+ +  G KT+   + YT 
Sbjct: 238 SPDMTFLVNLRFHDLRHEATSRFFEKKLNLMEVASITGHKTLQMLKRYTH 287


>gi|192288610|ref|YP_001989215.1| site-specific tyrosine recombinase XerC [Rhodopseudomonas palustris
           TIE-1]
 gi|192282359|gb|ACE98739.1| integrase family protein [Rhodopseudomonas palustris TIE-1]
          Length = 323

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 37/272 (13%), Positives = 81/272 (29%), Gaps = 31/272 (11%)

Query: 89  VNSRISFESYFDQIIRKSGDF----DYRKITTKHIRSGVESRKH---TPSSAIQFLTSMR 141
                    +   +    G       + ++    +R+ + +R+       S ++ L  MR
Sbjct: 43  EAYARDVRQFLQFLAEHWGGEVTLGRFARLEATDVRAFMAARRADEIAGRSLMRALAGMR 102

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR-------- 193
              ++  R+    +    SV  PK K    +P      ++         + R        
Sbjct: 103 SFGRFLEREGKGRVGALASVRAPKIKKSLPKPLPIAAAKRLADADERAGEERETWVLIRD 162

Query: 194 -LAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTI-------ITVELPDGF 241
                 L  SGLR S++     + +    + +   +  +   T        +  ++ +  
Sbjct: 163 AAVMALLYGSGLRISEALGLKRRDVPAAGKGDTLIVHGKGNKTRMVPVLQNVLAQIAEYA 222

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISAD 299
                  P     F +      ++     +  +      G+    + H +R   AT    
Sbjct: 223 AACPYNLPPDGPMF-VGARGGPLSPRIIQLAMERLRGGLGLPDSATPHALRHSFATHLLS 281

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            G     +    G  ++   + YT G D  RL
Sbjct: 282 RGGDLRAIQELLGHASLSTTQVYT-GIDTERL 312


>gi|332177645|gb|AEE13335.1| integrase family protein [Porphyromonas asaccharolytica DSM 20707]
          Length = 414

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 36/242 (14%), Positives = 85/242 (35%), Gaps = 22/242 (9%)

Query: 103 IRKSGDFDYRKITTKHIRSGVESRKHTP-SSAIQFLTSMRVLFKWAVRQEYVAINPCLSV 161
               G  ++           ++++ +   ++A + L  ++ +  +A ++  +  +P L +
Sbjct: 153 REDIGLLEFTPSVVMDFELYLKTKANLAHNTAQKKLKLLKTMTIFAQKRGIIMHDPFLDI 212

Query: 162 ERP-KRKTEGIRPWTKEDMQQFKS----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216
           +   K    G    T++++    +            R  F F  ++GL   D      + 
Sbjct: 213 KFHTKPVDRGF--LTEDEVSLIVAKDLTRLPRLELVRDIFIFSCFTGLAYIDVRNLTPED 270

Query: 217 L----QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ--KMNATQFS 270
           +           K +KT     V L D   K + ++    +T+    D +   + + Q +
Sbjct: 271 IVVMDDKEWVMSKRKKTNIAFNVLLLD-LPKAI-ISKYNHDTY---RDGKLFPILSNQKT 325

Query: 271 IWF-KAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
             + K  A   G+ K  + H  R   AT+    G     +    G   +   + Y +  +
Sbjct: 326 NSYLKEIADICGIKKNLTFHLARHTFATLCLSKGVPMESVSKMLGHTNIRTTQIYARITN 385

Query: 328 RI 329
           + 
Sbjct: 386 KK 387


>gi|256956495|ref|ZP_05560666.1| site-specific recombinase [Enterococcus faecalis DS5]
 gi|294780322|ref|ZP_06745691.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis PC1.1]
 gi|256946991|gb|EEU63623.1| site-specific recombinase [Enterococcus faecalis DS5]
 gi|294452586|gb|EFG21019.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis PC1.1]
 gi|315034593|gb|EFT46525.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0027]
          Length = 382

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 53/350 (15%), Positives = 117/350 (33%), Gaps = 43/350 (12%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSA----LTGSTPKREYINSP 64
            +V     + G   + +R  +   ++           +  +A    L           S 
Sbjct: 11  KYVFSYSNKKG-TFWGYRYPYYNSLKHRKEASKRGFESERAANKALLKIQYALETQNTSF 69

Query: 65  RKKPT-TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIR-- 120
            +    T+   I  +   A   + +V+++ + ES     I    G+     +     +  
Sbjct: 70  IENKQLTIDEWIDVWIPYAQ-DNWSVSTKQNIESAIKFHISPLIGNQKLSSLNKITYKRE 128

Query: 121 ---SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
                 +  K+T S+   +   +  +   AV  + +  N     +     +  +R ++K 
Sbjct: 129 FIDKLRQENKYTESTIQTWHKIVMRMINAAVHNQIIPSNTLTGFKF--DLSNNVRSFSKN 186

Query: 178 DMQQFKSFWS-EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ------------NNIFSI 224
           ++Q+F +    E  Q ++ F  LL SG+R  +        +              +    
Sbjct: 187 ELQRFVAALENEDIQTQVIFLTLLKSGMRKGELMGLRWSDIDLTEKYFDINSTRGDYGEN 246

Query: 225 KTQKTGTIITVELPDGFMKLLAMTPI--------------GKETFFINNDKQKMNATQFS 270
           K +   +I  V   +  + L+                    K+ F +++    +  ++ +
Sbjct: 247 KPKTKTSIRKVYFDNSLLTLIKKYKNHEKERLLKEGIILKDKDYFILSSRNLPIKQSRIT 306

Query: 271 IWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
             F+    KA V N + HG+R   AT   +AGA    +    G K ++  
Sbjct: 307 YMFRLLCEKAEVQNITVHGLRHTHATFLIEAGANIKYVSTRLGHKNINIT 356


>gi|187251397|ref|YP_001875879.1| integrase family protein [Elusimicrobium minutum Pei191]
 gi|186971557|gb|ACC98542.1| Integrase family protein [Elusimicrobium minutum Pei191]
          Length = 355

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 42/321 (13%), Positives = 88/321 (27%), Gaps = 30/321 (9%)

Query: 23  YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSA 82
           Y    G  R+      +++     Y+       P        +           +Y  + 
Sbjct: 29  YRAEIGRHRKTLGSNVNDA---KNYVKLKLAGLPTPLDTLKEKTL---WGAYCRDY--TD 80

Query: 83  HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK---HIRSGVESRKHTPSSAIQFLTS 139
            +      ++       +   R         I  K      S ++       S  +    
Sbjct: 81  KYSIQDKTTKRFVNKAIEDFNRIIAPKYLIDIDEKSVSKFVSEMDKEGRGKYSINRERRV 140

Query: 140 MRVLFKWAVRQEYVAIN-PC---LSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195
           +  + + A  +E    N P      V + K     +  ++K+ +++        S  + A
Sbjct: 141 IIKMLREA--EEIKDYNYPKHSWKLVPKFKEAKGRLIKYSKDHLKKLYKNAD--SMLKAA 196

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-------VELPDGFMKLLAMT 248
                Y+G+R  +  +A    +  +   I  QK    I        + L     + L   
Sbjct: 197 IMLGSYAGMRVEEVFQAEWTDVNWDRGVIYVQKKENYIPKDYEDREIPLLKPLRQYLLKN 256

Query: 249 P--IGKETFFINNDKQ-KMNATQFSIWFKAKATKAGVNKS-AHGVRKFSATISADAGATA 304
                        D          S  F+  A + G+  +  H +R    + SA+ G   
Sbjct: 257 KGSSKNTHIVAFKDGSSPKTPEVISALFRRLAHELGIPYTKFHLLRHNFGSFSAEQGIDP 316

Query: 305 HELMATYGWKTVDQAETYTKG 325
             +    G   ++    Y   
Sbjct: 317 FSIQKAMGHSKLETTMIYIHD 337


>gi|163790313|ref|ZP_02184745.1| integrase [Carnobacterium sp. AT7]
 gi|159874384|gb|EDP68456.1| integrase [Carnobacterium sp. AT7]
          Length = 382

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 56/345 (16%), Positives = 122/345 (35%), Gaps = 52/345 (15%)

Query: 44  IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII 103
                  L     K+    S  +   T   + ++++       +  N+ +        I 
Sbjct: 40  WNKAQRELNNRIDKKIKTIS--QSDITFGEITTKWQHVYK-NRVKPNTYLRSTLTLKIIK 96

Query: 104 RKSGD-FDYRKITTKHIRSGVES----RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158
           R   D +  R I +  I+  +ES      ++ SS  Q  T +  + ++A ++  +A+NP 
Sbjct: 97  RYIPDDYIVRNINSVFIQETIESIYYTENYSFSSTKQCKTLLNSILEFAKKKTIIAVNPV 156

Query: 159 LSV---ERPKR----KTEGIRPWTKEDMQQFKSFW---SEGSQPRLAFEFLLYSGLRCSD 208
           L V   ++PK     +  G +    ++++           G +     EFL  +GLR  +
Sbjct: 157 LEVEIKKKPKTFEQIEKIGNKYLEPDELKTVLDCLRSFKSGRRNANLTEFLSLTGLRFGE 216

Query: 209 SCRAGVQHLQNNIFSI----------------KTQKTGTI-ITVELPDGFMKLLAMTPIG 251
           +      + +N+   +                 T KTG     V+L D   +++    + 
Sbjct: 217 AVALTYDNFKNDFIEVNGTLDYHTHKSSAGIKTTAKTGKANRNVDLSDRAKEIIIEVILE 276

Query: 252 ------------KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS 297
                       K   F+      ++   ++   K  A K G+ K  ++H +R    +I 
Sbjct: 277 NKLLKKEEHFQEKNYIFVTKYGNPIDIATYNTSLKIAAKKCGIEKNLTSHVLRHTHISIL 336

Query: 298 ADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISS 341
           ++ G     +M   G +  +     YT      ++     ++++ 
Sbjct: 337 SEIGVPLKAIMDRVGHERPETTLGIYTHVT--KKMQQGVMQKLND 379


>gi|327440384|dbj|BAK16749.1| integrase [Solibacillus silvestris StLB046]
          Length = 157

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 50/144 (34%), Gaps = 9/144 (6%)

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVE----LPDGFMKLLAMTPI 250
           FEF+  +G R  +  +     +       I   K      V           + L     
Sbjct: 6   FEFMYSTGCRIGEVVKLDRHDIDFRTNSVIVQGKGDKEREVYFNTRCSIWLKRYLDERED 65

Query: 251 GKETFFINNDK--QKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHE 306
                FI + K  ++M+        K  + +AG+ K    H +R   AT   + GA    
Sbjct: 66  DDPCLFITDRKPKRRMSIDNLRYIIKRVSNRAGIKKCIHPHQLRHSYATHMINNGAPIDV 125

Query: 307 LMATYGWKTVDQAETYTKGADRIR 330
           + +  G +  +  + Y + + ++R
Sbjct: 126 IQSLLGHEKSETTKIYAQLSGKLR 149


>gi|322420262|ref|YP_004199485.1| integrase family protein [Geobacter sp. M18]
 gi|320126649|gb|ADW14209.1| integrase family protein [Geobacter sp. M18]
          Length = 340

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 47/297 (15%), Positives = 93/297 (31%), Gaps = 37/297 (12%)

Query: 50  ALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF 109
                  +           T L   I +  ++  W +     + S      ++I   GD 
Sbjct: 42  ERQKMMEQASLTPQEIAARTLLSEAIEQVYQT-RWKNNKDG-KQSRTRAL-RLIELIGDV 98

Query: 110 DYRKITTKHIRS---GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
               I    +R     +E+ K   ++  ++L  ++ + ++  RQE+        +   K+
Sbjct: 99  QVGAINEDVVRKIIFKLEATKVKSATVNRYLEVLKTILRY-KRQEW------DFIHLKKQ 151

Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQ-PRLAF--------EFLLYSGLRCSDSCRAGVQHL 217
               IR  +K +  +      E     R  F        E LL +G R S+        +
Sbjct: 152 PKGRIRVLSKPEEDKAIRLLRETDHCSRRHFYPQVADLVEILLDTGCRLSEVLNLPYDDV 211

Query: 218 --QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF-----S 270
               N+ SI   K     ++ +     ++L             N K+  + T +      
Sbjct: 212 NFDTNLISIWINKGDRPRSIPMTYRVRRILQERQK-------TNKKKPFSVTIYQAGKAW 264

Query: 271 IWFKAKATKA-GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            W + +           H +R   AT   + G   + +    G  ++   E Y   A
Sbjct: 265 AWVRKEMKLERDTEFVLHALRHTCATRLVNKGVDLYVVKEWLGHSSIQVTERYAHLA 321


>gi|152985240|ref|YP_001350479.1| phage integrase family site specific recombinase [Pseudomonas
           aeruginosa PA7]
 gi|150960398|gb|ABR82423.1| site-specific recombinase, phage integrase family [Pseudomonas
           aeruginosa PA7]
          Length = 404

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 56/369 (15%), Positives = 112/369 (30%), Gaps = 56/369 (15%)

Query: 10  FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY-------IN 62
            +    T +G   Y  R   G++  L      T   A   AL      RE+       + 
Sbjct: 29  GLFVRVTANGHKAYVLRWARGKKRTLGRVGVLTLDQARKEALQDLAEAREHGEPLAVALG 88

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI--- 119
                  TL+  I ++  S  W    + S     +  +    +       +IT + +   
Sbjct: 89  RKNSTTPTLRDFIDDHY-SP-WMDTHLKSASKTLNLINVGFAEIMSKRLTEITQRDLETL 146

Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI-RPWTKED 178
           R   ++  +T S+A + + S+R     AV   ++  +P   +++ K    G  R    ++
Sbjct: 147 RISWQAAGNTDSTANRKMASLRGALSRAVEWGFLDDHPMARLKQIKTDRAGRVRYLLPDE 206

Query: 179 MQQFKSF------------------WSEGSQPRLA--------------FEFLLYSGLRC 206
            ++ +                     +E  + RLA                  L +G+R 
Sbjct: 207 EKRLRQAMEDRQESIRTDRDSANQWRAERKKERLADLREVLFVDHLKPLVLLSLNTGMRR 266

Query: 207 SDSCRAGVQHLQNNIFSIKTQ----KTGTIITVELPDGFMKLLAMT----PIGKETFFIN 258
            +        +      +  +    K+G    + L    ++ L       P      F  
Sbjct: 267 GEVFNLTWADIDLTNKLVTVEGEGAKSGQTRHIPLNKEALETLKGWRKQHPRNTGYVFPG 326

Query: 259 NDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD 317
            D +++        ++     A V     H +R   A+    AG   + +    G   + 
Sbjct: 327 KDGERL--DNVKKSWEGLLKLANVTGFRWHDLRHTFASKLVMAGVPLNTVRELLGHSDIT 384

Query: 318 QAETYTKGA 326
               Y   A
Sbjct: 385 MTLRYAHLA 393


>gi|91782176|ref|YP_557382.1| putative bacteriophage integrase [Burkholderia xenovorans LB400]
 gi|91686130|gb|ABE29330.1| Putative bacteriophage integrase [Burkholderia xenovorans LB400]
          Length = 444

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 55/347 (15%), Positives = 99/347 (28%), Gaps = 54/347 (15%)

Query: 29  HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYR--KSAHWGS 86
             RR  L    E        S +     +        K   T+   I  +   +      
Sbjct: 71  EARRRALELTQEVEHSNDTASEIVRKRERAHRTEHAAKVVPTIDGFIDGHYGKRLRATIK 130

Query: 87  LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHTPSSAIQFLTSMRV 142
            A  +                    +++             E R   P+S  + LTS+R 
Sbjct: 131 TAPRTITELRKLGKAFPGTLNRISVQQVLEWAYAELEKEVGEDRIMCPASVRRKLTSLRG 190

Query: 143 LFKWAVRQEYVAINPCLSV----ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL---- 194
           LF  A+R +++  NP   V    +    + EG   W + DM+       +  + RL    
Sbjct: 191 LFSHAIRLDFITANPVAEVMDDNKALFDEGEGRDQWLRPDMEIRLRAALDAREARLRKSH 250

Query: 195 -------------------------AFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK-- 225
                                    A    L +GLR  +  +     +   N    ++  
Sbjct: 251 AQIDSDARCDIVYGPDAAYVDHVKPAVLVALGTGLRRGEQMQLQWPDVDFDNERIRVRKA 310

Query: 226 TQKTGTIITVELPDGFMKLLAM-------TPIGKETFFINNDKQKMNATQFSIWFKAKAT 278
           T K      V + D  +++L          P+     F N   +          ++    
Sbjct: 311 TSKGDRTRYVPMCDEVIQVLKAWKAQTCSGPVQPILVFGNALGEVRREIGP---YRHVLA 367

Query: 279 KAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +A ++  + H +R   AT  A  G     +    G  ++ Q   Y  
Sbjct: 368 EAKIDSFTWHDLRHSFATRLAQHGVPIERIGKWLGHSSLQQTMRYAH 414


>gi|11345545|gb|AAD55407.2|AF180939_1 site-specific recombinase IntI [Vibrio mimicus]
          Length = 320

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 42/293 (14%), Positives = 89/293 (30%), Gaps = 55/293 (18%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWA 147
           A  +  ++  +  + I          +  K +   +       + A +  +       + 
Sbjct: 19  AKKTIEAYLHWITRYIYFHNKKHPSLMGDKEVELFLTHLAVNGNVAAKTQSLALNSLSFL 78

Query: 148 VRQEYVAINPCLSVE--RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLR 205
            + E + +   L +   R + + +     T++++++         + +L  + L  SGLR
Sbjct: 79  YK-EILKMPLSLEIRFQRSQLERKLPVVLTRDEIRRLLDVVDP--KYQLPAKLLYGSGLR 135

Query: 206 CSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLAMTPIGKETFFINN---- 259
             +  R  +Q +  +  +I+    K G   TV L       L       + ++  +    
Sbjct: 136 LMECIRLRIQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHLKEQIALAKRYYDRDLHQK 195

Query: 260 ------------------------------------------DKQKMNATQFSIWFKAKA 277
                                                      +  MN T      +  A
Sbjct: 196 NYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVMRRHHMNETVLQRTVRRSA 255

Query: 278 TKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
            +AG+ K+   H +R   AT   + GA    +    G   V   + YT   DR
Sbjct: 256 QEAGIEKTVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHVLDR 308


>gi|56475818|ref|YP_157407.1| phage integrase [Aromatoleum aromaticum EbN1]
 gi|56311861|emb|CAI06506.1| Phage integrase [Aromatoleum aromaticum EbN1]
          Length = 432

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 48/301 (15%), Positives = 92/301 (30%), Gaps = 34/301 (11%)

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK 113
           +  K+    +      TL+ +   Y      G L  +++I  + +         D     
Sbjct: 90  AKQKKATAEAEAVAGVTLQEVCDAYVSRP--GKLKASTQIEIKRHVATTFVAWKDKPIAA 147

Query: 114 ITTKHIRSGV----------ESRKHTPSSAIQFLTSMRVLFKWAVRQ-------EYVAIN 156
           IT    R             +    +P  A Q  + +R L  +A RQ         +  N
Sbjct: 148 ITEDDCRKRYREMLTKGLRGDRDGGSPGQANQGFSVLRALINYAARQYKKADGSPLILRN 207

Query: 157 PCLSVE-----RPKRKTEGIRP-----WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRC 206
           P  +++      P+RKT          W      +  ++  +         FLL +G R 
Sbjct: 208 PASALKDDWVALPERKTRIPESKIGAVWNALQQWRKVAYTRDTESSIDLVTFLLLTGARI 267

Query: 207 SDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLLA-MTPIGKETFFINNDKQK 263
            ++     +  +L    + +   K    + + L     +LL     I    F   +  + 
Sbjct: 268 GEAAALEWERVNLDEGWWHLPDPKNRNPVWLPLSTQAAELLKTRRRIKDNPFVFTSWGEC 327

Query: 264 MNATQFSIWFKAKATKAGVNKSAHGVRKFSATI-SADAGATAHELMATYGWKTVD-QAET 321
            + +      K  +  AG   + H +R+   T   A      H++            A  
Sbjct: 328 KHISDPRDTMKKLSAVAGTKITPHDLRRTFTTFGIAQCSVELHKIELLTNHVPKGVTARH 387

Query: 322 Y 322
           Y
Sbjct: 388 Y 388


>gi|315173229|gb|EFU17246.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX1346]
          Length = 382

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 53/350 (15%), Positives = 117/350 (33%), Gaps = 43/350 (12%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSA----LTGSTPKREYINSP 64
            +V     + G   + +R  +   ++           +  +A    L           S 
Sbjct: 11  KYVFSYSNKKG-TFWGYRYPYYNSLKHRKEASKRGFESERAANKALLKIQYALETQNTSF 69

Query: 65  RKKPT-TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIR-- 120
            +    T+   I  +   A   + +V+++ + ES     I    G+     +     +  
Sbjct: 70  IENKQLTIDEWIDVWIPYAQ-DNWSVSTKQNIESAIKFHISPLIGNQKLASLNKITYKRE 128

Query: 121 ---SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
                 +  K+T S+   +   +  +   AV  + +  N     +     +  +R ++K 
Sbjct: 129 FIDKLRQENKYTESTIQTWHKIVMRMINAAVHNQIIPSNTLTGFKF--DLSNNVRSFSKN 186

Query: 178 DMQQFKSFWS-EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ------------NNIFSI 224
           ++Q+F +    E  Q ++ F  LL SG+R  +        +              +    
Sbjct: 187 ELQRFVAALENEDIQTQVIFLTLLKSGMRKGELMGLRWSDIDLTEKYFDINSTRGDYGEN 246

Query: 225 KTQKTGTIITVELPDGFMKLLAMTPI--------------GKETFFINNDKQKMNATQFS 270
           K +   +I  V   +  + L+                    K+ F +++    +  ++ +
Sbjct: 247 KPKTKTSIRKVYFDNSLLTLIKKYKNHEKERLLKEGIILKDKDYFILSSRNLPIKQSRIT 306

Query: 271 IWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
             F+    KA V N + HG+R   AT   +AGA    +    G K ++  
Sbjct: 307 YMFRLLCEKAEVQNITVHGLRHTHATFLIEAGANIKYVSTRLGHKNINIT 356


>gi|88704224|ref|ZP_01101938.1| site-specific recombinase IntIA [Congregibacter litoralis KT71]
 gi|88701275|gb|EAQ98380.1| site-specific recombinase IntIA [Congregibacter litoralis KT71]
          Length = 330

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 42/309 (13%), Positives = 85/309 (27%), Gaps = 64/309 (20%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK------H 128
           + + R+      LA  +  ++  +  + I          +  KHI   +           
Sbjct: 16  LDQLRQHIRSTGLAYRTEQTYVHWVRRYILFHKKQHPGSLGAKHIEQFLNHLTVRSCSVS 75

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           T   A+  L  +   F  AV    +   P       +        +++ ++    S    
Sbjct: 76  TQRVALNALVYLYRKF-LAVDVGDLEFKPA------RANRRLPVVYSRSEVAAILSKLK- 127

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLA 246
               RL    +  SG+R ++     V+ +   +N   +++ K     +  LP   +  L 
Sbjct: 128 -GVHRLMVALMYGSGMRSAELLSLRVKDIDFDSNNIIVRSGKGNKDRSTMLPQRLVPALK 186

Query: 247 MTPIGKETFFINN---------------------------------------------DK 261
                 E     +                                              +
Sbjct: 187 RQICTVELLHAQDLADGFGAVYLPDALERKYPNAAEETAWQFLFPASRIGRDPRSGVLRR 246

Query: 262 QKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQA 319
             ++ T  +   +     AG++K A  H  R   AT   + G     +    G   +   
Sbjct: 247 HHLHPTALTRQIRRAVRNAGIHKPARSHSFRHSFATHLLEDGYDLRTIQELLGHSDITTT 306

Query: 320 ETYTKGADR 328
           E YT   +R
Sbjct: 307 EIYTHVVNR 315


>gi|255020691|ref|ZP_05292753.1| Tyrosine recombinase xerC [Acidithiobacillus caldus ATCC 51756]
 gi|254969927|gb|EET27427.1| Tyrosine recombinase xerC [Acidithiobacillus caldus ATCC 51756]
          Length = 317

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 37/272 (13%), Positives = 74/272 (27%), Gaps = 32/272 (11%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRKHTPSSAIQFLT 138
            +    S  ++ +          +     I +      +H      +R     S  +   
Sbjct: 16  QAYRPASASAYRADLHLWQEFLAEQGIDHIESVQAEHLRHFIRRERARGVAIRSLRRRFA 75

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS-------------- 184
           ++R L++   RQ     +P   +  PK +       T +  QQ                 
Sbjct: 76  ALRALYRHLQRQHPQLPDPSRYLRLPKLEQHFPDWLTVDQAQQLLDGPTSSDGGPAQPAT 135

Query: 185 --FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241
                  ++ R   E L  S LR S+     + HL      ++   K G    V +    
Sbjct: 136 AQTHFAMTRDRAMMELLYSSALRVSELVAIDLDHLDLAGSWLRVFGKGGKERMVPVGQVA 195

Query: 242 MKLLAM--------TPIGKETFFINNDKQKMNATQFSIWFKAK-ATKAGVNKSAHGVRKF 292
           +  L               +  F+N    +++              + G     H +R  
Sbjct: 196 LTALRTYLPARAAVAAAEVKALFLNQRGGRLSVRSVQRIVDGWGRDRLGQALHPHTLRHS 255

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324
           +A+    +      +    G   +     YT 
Sbjct: 256 AASHLLQSSGDLRAVQDFLGHAGIATTAIYTH 287


>gi|229163442|ref|ZP_04291393.1| Integrase/recombinase [Bacillus cereus R309803]
 gi|228620011|gb|EEK76886.1| Integrase/recombinase [Bacillus cereus R309803]
          Length = 332

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 41/317 (12%), Positives = 87/317 (27%), Gaps = 25/317 (7%)

Query: 32  RIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNS 91
           + R            +   L     K+E          T+   +    +      L   +
Sbjct: 3   KRRDSLTISEDLSNVFSDRLKNDQRKKETAEKRYTFNLTIDKALEIVVRQMKATGLRERT 62

Query: 92  RISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQE 151
              +  +     + +      ++   HI   + S   +  + +  L  ++          
Sbjct: 63  INDYYLHVSHFTKITDTQYLEELNVNHIYEWLSSMNVSNQTKLTRLKCLKAFLGRCHDNG 122

Query: 152 YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLAFEFLLYSGLRCS 207
           ++ IN   +V+  K  T      T  ++    S          +   A   +  +G+R  
Sbjct: 123 WIDINFWRNVK-IKVDTPVKEGATDREINILLSVLDLTRFLDLRDATAILLMYQTGIRVG 181

Query: 208 DSCRAGVQHLQNN--IFSIKTQ--KTGTIITVELPDGFMKLLAMT-----------PIGK 252
              +   +H+  +  + SI     K    I +   D   +LL +             +  
Sbjct: 182 TLAQLEHRHVDLDTKVLSIDGGIIKNHESIYLPFDDALARLLDVLMKQNEIIRSEYNVKN 241

Query: 253 ETFFINNDKQ----KMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHEL 307
           +  FI                S      A + G+ N + H +R+  A      GA    +
Sbjct: 242 DYLFITKSGGSVLTSPTNNIISKRMTKHAKEYGLKNINPHAIRRGFAKNLLKKGANVALI 301

Query: 308 MATYGWKTVDQAETYTK 324
               G   +     Y  
Sbjct: 302 SKALGHSDISVTTRYLH 318


>gi|13272355|gb|AAK17117.1|AF302086_1 DNA integrase IntI [Pseudomonas aeruginosa]
          Length = 317

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 40/301 (13%), Positives = 91/301 (30%), Gaps = 62/301 (20%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129
           ++ + R+   +   ++ +  ++  +    IR  G      + +  + + +      RK +
Sbjct: 16  VLDQLRERIRYLHYSLQTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75

Query: 130 PSSAIQFLTSMRVLFK--WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            S+  Q L ++   +         ++       + RP+         T +++ +   F  
Sbjct: 76  VSTHRQALAALLFFYGKVLCTDLPWLQ-----EIGRPRPSRRLPVVLTPDEVVRILGFL- 129

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
           EG   RL  + L  +G+R S+  +  V+     +    ++  K      + LP+     L
Sbjct: 130 EGEH-RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSL 188

Query: 246 AMTPIGKETFFINN---------------------------------------------D 260
                    +++ +                                              
Sbjct: 189 REQLSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVR 248

Query: 261 KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           +  M    F   FK    +AG+ K  + H +R   AT    +G     +    G   V  
Sbjct: 249 RHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVST 308

Query: 319 A 319
            
Sbjct: 309 T 309


>gi|310778729|ref|YP_003967062.1| integrase family protein [Ilyobacter polytropus DSM 2926]
 gi|309748052|gb|ADO82714.1| integrase family protein [Ilyobacter polytropus DSM 2926]
          Length = 324

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 36/296 (12%), Positives = 98/296 (33%), Gaps = 45/296 (15%)

Query: 88  AVNSRISFESYFDQII----RKSGDFD-------YRKITTKHIRSG----VESRKHTPSS 132
           +  +   +  Y ++ +      +G+F          ++  + I       +E R+   +S
Sbjct: 32  SEKTLKDYMFYLNKFLNFVYEGNGEFHKDEIVRLMTEVEKEDIEDYVYHLIEERELKNTS 91

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR---PWTKEDMQQFKSFWSEG 189
             + ++S++ L+    +  +   NP   V   K            +  ++++        
Sbjct: 92  VNKIISSLKSLYNELEKHGH--ENPLKFVPLLKVSRHNFENVLKVSFSEIKEILKKHEVL 149

Query: 190 S----QPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDGF 241
                + R+    L Y+G+R  +        +    +  +  ++  K+G      L    
Sbjct: 150 DDKSYRNRIIVHTLFYTGMRSQELLNLKYSDIIKREKEYVIKLEKTKSGREQYKALHPEC 209

Query: 242 MK-------------LLAMTPIGKETFFINN--DKQKMNATQFSIWFKAKATKAGVNKSA 286
           M+              L+ + + ++  F ++  +  +++ +      +        + S 
Sbjct: 210 MEKIFSYKKYIKKLYSLSDSQLEEQYIFPSDFLNNTRLSYSSLYTIIQNMGKLIEKDISP 269

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
           H +R   AT  +  GA   E+    G       E Y     +  L  +   ++ ++
Sbjct: 270 HNIRHAVATELSLQGADIMEIRDFLGHADTKVTEVYINA--KGLLEKRAIEKLPAL 323


>gi|298484512|ref|ZP_07002659.1| integrase [Bacteroides sp. D22]
 gi|298269334|gb|EFI10948.1| integrase [Bacteroides sp. D22]
          Length = 423

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 44/268 (16%), Positives = 91/268 (33%), Gaps = 31/268 (11%)

Query: 86  SLAVNSRISFESYFDQIIR------KSGDFDYRKITTKHIRS----GVESRKHTPSSAIQ 135
             A ++   +E  + Q+ +         D    ++    I +        RK  P +   
Sbjct: 145 DRAQSTYKQYEVLYKQLKQFLREEYHVEDIPLAELDLPFIEALNFFFRVKRKMKPRTVKA 204

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-WSEGSQ--P 192
            +  +  + + A+ +  +   P    E  K + +  +  T +++          G+Q   
Sbjct: 205 RIVLLNKVIRLALHRRIITRPPFDGFELEKTELK-NKSLTNDELDLLMKTPLKSGTQRFI 263

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHL---QNN--IFSIKTQKTGTIITVEL---PDGFMKL 244
           R  F F  ++GL  +D  +   + +    +     S   QK+ T   V+L   P   M+ 
Sbjct: 264 RDMFLFSTFTGLAYADVHKLSWKDIITEDDGSLWISANRQKSHTEFNVKLLNIPIRIMEY 323

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS-ADAG 301
                   + F        M+  Q ++  K  A   G+N+  S H  R   A+      G
Sbjct: 324 YKGLAPDGKVF------PHMSLGQVNVGLKRIARNCGINRKLSYHMARYTFASQICLSQG 377

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRI 329
                +    G K ++  + Y +  +  
Sbjct: 378 VPIESVSRMLGHKHIETTQRYARLNNEK 405


>gi|260890722|ref|ZP_05901985.1| putative integrase-recombinase protein [Leptotrichia hofstadii
           F0254]
 gi|260859600|gb|EEX74100.1| putative integrase-recombinase protein [Leptotrichia hofstadii
           F0254]
          Length = 354

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 41/278 (14%), Positives = 105/278 (37%), Gaps = 22/278 (7%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
            K L   ++ S     +A N+  S+ + F +  ++  +  ++ I+T  +++ +     + 
Sbjct: 69  FKDLFELFKNSKK-DIVAKNTLNSYINSFKR-CKELHNLVFKDISTPILQNLINDLNCSI 126

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK-RKTEGIRPWTKEDMQQFKSFWSEG 189
           S+       +++ + +A   + +  N    +  PK  + +   P+  +++++    W   
Sbjct: 127 STKSITKGFLKIFWDYAREIDILEKNRAEFINLPKETEIKEKNPFNYDEIEKL---WENK 183

Query: 190 SQPRLAFEF-LLYSGLRCSDSCRAGVQHLQNNIFSIKTQ---KTGTIITVELPDGFMKLL 245
               + F   ++Y+G+R  ++     +++      I      K G   ++ +     +++
Sbjct: 184 DIIWVKFILIMIYTGMRIEETVELKKENVDLQEGFIHGGNKTKKGKNRSIPIHKDIFEII 243

Query: 246 AMTPIGKET-FFINNDK----------QKMNATQFSIWFKAKATKAGVNK-SAHGVRKFS 293
                   T + I NDK          + +    F   F        +NK   H  RK  
Sbjct: 244 KELYENSPTDYLIYNDKWIFSKKKNENKPLRKNYFHEKFYETLKTLKINKHKPHDCRKTL 303

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           AT+ ++       +    G + +   + Y    D+ +L
Sbjct: 304 ATLMSNQKINNIVITDIMGHENIATTKQYYIQTDKQKL 341


>gi|120553335|ref|YP_957686.1| phage integrase family protein [Marinobacter aquaeolei VT8]
 gi|120323184|gb|ABM17499.1| phage integrase family protein [Marinobacter aquaeolei VT8]
          Length = 396

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 64/373 (17%), Positives = 125/373 (33%), Gaps = 53/373 (14%)

Query: 18  HGKIIYYFR---KGHGRRIRL-PYPHES------TFIPAYMSALTGSTPKREYINSPRKK 67
            G   +++R   +G    + L  YP  S          A      G  PK+ +  S +  
Sbjct: 16  RGTKTWFYRFRFRGKQDAVSLGRYPTTSLLEARDVHGDACALLAKGINPKKAFKESKKVA 75

Query: 68  PTT------LKWLISEYRKSAHWG-SLAVNSRISFE---SYFDQIIRKSGDFDYRKITTK 117
             T          I  Y  +         + ++  +    +   + R  G      IT +
Sbjct: 76  EQTWTGQELFDDWIRVYSSTPSTRTKRTPSEQVVRQTTWRWNKYLRRTLGQILIPTITKQ 135

Query: 118 HIRSGVESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK----RKTEGI 171
              S + +     +   A + LT +  +F  AV +  +  NPC  ++  K    + +   
Sbjct: 136 VAASLISAVSELNSREQARKCLTILNGMFGLAVAKGLIDENPCYGLQPSKLGASKGSPRS 195

Query: 172 RPWTKEDMQQFKSFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKT 226
           R  T  +M++F       S  +  R A + +L +GLR  + C+A    +    N++++  
Sbjct: 196 RVLTPSEMKRFWEALEDSSLDTSVRAALKAILLTGLRRGEICQAKWSDIDFNTNVWNLPP 255

Query: 227 Q--KTGTIITVELPDGFMKLLAMTPIGKETFFINNDK--QKMNATQFSIWFK-------- 274
           +  K+    TV +      LL    +     F +     Q + +   +            
Sbjct: 256 EITKSRRKHTVPISTALKNLLQSLDMDGTYVFRSTRAPWQPIGSNSLTTAIARLQGIKTQ 315

Query: 275 ---AKATKAGVNK-SAHGVRKFSATISADAGAT-AHELMATYGW-KTVDQAETYTKGADR 328
               KA   G+ + S H +R+  AT   +   T  H +             + Y     R
Sbjct: 316 QVNEKAPLFGLERFSVHDLRRTVATGLGEYCETPPHVIRRILNHLSDDRLEDIY----QR 371

Query: 329 IRLGIKNSRRISS 341
             L  + ++ +  
Sbjct: 372 ATLFDEQAKALER 384


>gi|308174996|ref|YP_003921701.1| Tyrosine recombinase xerC [Bacillus amyloliquefaciens DSM 7]
 gi|307607860|emb|CBI44231.1| Tyrosine recombinase xerC [Bacillus amyloliquefaciens DSM 7]
          Length = 385

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 49/358 (13%), Positives = 110/358 (30%), Gaps = 51/358 (14%)

Query: 18  HGKIIYYFRKGHGRRIRLPYPHESTFI--PAYMSALTGSTPKREYINSPRKKPTTLKWLI 75
           +G   Y  R       R     +  F        A        EY         +++   
Sbjct: 9   NGTWEYRIRYKDKNSNRYKETSKRGFKTKKEAQLAAAQIETDIEYYGFANDGKESIREYF 68

Query: 76  SEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRK--HTPSS 132
           S++ +     ++   +    E      I+ + G+   + I+    +  +   +  ++  +
Sbjct: 69  SKWLEVYKKPNVKPITYSLQERNVRLNILPRWGEVKLKDISRTEYQKWINELRLNYSEGT 128

Query: 133 AIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPK--RKTEGIRPWTKEDMQQFKSFWSEG 189
             +  + M      AV +   +  NP   ++ PK  +  + I+ +T + +++F +   E 
Sbjct: 129 VRRIHSLMNTALNDAVHEFRILRENPVTRIKIPKETKNNKEIKFFTVDQLEKFLNQVKEP 188

Query: 190 SQP---------RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT----------- 229
            +           + F  +  +GLR  ++       +     +IK  KT           
Sbjct: 189 QKNSKYKHSIQYYVLFSLMARTGLRIGEALALTWNDIDFEEGTIKVSKTLVYPTNSTPYL 248

Query: 230 ---------------------GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ 268
                                     +   +  +K       G +  F  +D + +    
Sbjct: 249 STPKSKAGLRIIKLDIHTIQLLKKHRINRNEVVLKYKNYKKPGADIVFYQHDGRWLRTNV 308

Query: 269 FSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTK 324
              +FK    +A +   S H +R   A    +A A    +    G  ++   A+TY  
Sbjct: 309 VREYFKEICKRAELPILSPHALRHSHAVHLIEAKADLKFVSERLGHSSIKITADTYLH 366


>gi|84496094|ref|ZP_00994948.1| putative phage-related integrase [Janibacter sp. HTCC2649]
 gi|84382862|gb|EAP98743.1| putative phage-related integrase [Janibacter sp. HTCC2649]
          Length = 381

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 40/272 (14%), Positives = 82/272 (30%), Gaps = 20/272 (7%)

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
           P+   TT+      +     +G+   ++      +   I    G      +    +++  
Sbjct: 78  PKVARTTVSDWCDSWL--VGYGTRRKSTVRQAAVHVKVIKADFGSTPLSAVKPSDVKAWT 135

Query: 124 ESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
            +      PS+          +   AV    +  +PC     P +  +     T E +  
Sbjct: 136 VTLGERYAPSTTYAMYRRFAQIMSDAVHDGILQKSPCSRRTSPPQARQRPHVATTEQVWA 195

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ--------KTG-TI 232
                      R+A     + GLR S++    VQ +      +  Q        K+  ++
Sbjct: 196 LHDVMPA--HLRVAILLGAFVGLRVSEAAALRVQDVDYMRGVVTPQIQYPDVPLKSEMSM 253

Query: 233 ITVELPDGFMKLLAMTPI--GKETFFINNDKQKMNATQFSIWFKAKATKA-GVNK--SAH 287
             V +P     LL+      G  T     D +           +AK  +  G+ +    H
Sbjct: 254 TAVPMPSELALLLSANHAMYGGTTVVTAEDGRATTPYAIERAIRAKRGQVPGLPEGFRFH 313

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQA 319
            +R + A++   +G     +       T    
Sbjct: 314 DLRHYLASLLIASGLDVKVVQTRLRHATATTT 345


>gi|213971953|ref|ZP_03400051.1| prophage PSPPH06, site-specific recombinase, phage integrase family
           [Pseudomonas syringae pv. tomato T1]
 gi|301386017|ref|ZP_07234435.1| prophage PSPPH06, site-specific recombinase phage integrase family
           protein [Pseudomonas syringae pv. tomato Max13]
 gi|302058854|ref|ZP_07250395.1| prophage PSPPH06, site-specific recombinase phage integrase family
           protein [Pseudomonas syringae pv. tomato K40]
 gi|213923268|gb|EEB56865.1| prophage PSPPH06, site-specific recombinase, phage integrase family
           [Pseudomonas syringae pv. tomato T1]
          Length = 382

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 46/299 (15%), Positives = 100/299 (33%), Gaps = 50/299 (16%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISF---ESYF----DQIIRKSGDFDYRKITTKHIRSG 122
           +L++L  E+ +S  +  LA  ++  +            ++ +  G+   +K T   ++  
Sbjct: 76  SLQYLCDEFHRSQQFKELAKKTQDDYCYSRDVLVAYPTKLDKPLGELAVKKFTPAMVQRI 135

Query: 123 VESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
           ++      TPS A   L  +R L +W   + +V  NP   +E PK + +   P +   + 
Sbjct: 136 IDKIAEAGTPSKAAHALRYLRRLMQWGRNRGFVTDNPAKGIEAPKERKQRRLPDSTVMVD 195

Query: 181 QFKSFWSEGSQPR-----------LAFEFLLYSGLRCSDSCRAGVQH-LQNNIFSIKTQK 228
             K    +G   R              E      LR  ++     ++ L   + + + + 
Sbjct: 196 LIKFAHQQGQLKRGEKGACSPYLWYVMEIGYLCRLRGIETITLTDENELYEGVLTNRRKG 255

Query: 229 TGTIITVELPDGFMKLLAMTPIGKETF----------------FINNDKQKMNATQFSIW 272
           +   I    P       A   +  ET+                 ++    +++ +     
Sbjct: 256 SRDNIVRWTPRLRAAWDAAKAVRTETWQRLKTPVPFRADQRFLIVSASGGQLSKSGLDTA 315

Query: 273 FKAKATKAGVNKSA---------HGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           F+    +A ++K           H  ++   T +A   A   +     G K     + Y
Sbjct: 316 FQRLIVQA-IDKGVLTEAQRFGMHDFKRKGITDTAGTRADKQQ---ASGHKDESMMDVY 370


>gi|186896896|ref|YP_001874008.1| integrase family protein [Yersinia pseudotuberculosis PB1/+]
 gi|186699922|gb|ACC90551.1| integrase family protein [Yersinia pseudotuberculosis PB1/+]
          Length = 351

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 53/312 (16%), Positives = 97/312 (31%), Gaps = 28/312 (8%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87
             G+RIR  +  +   + A+          + ++   + K  +L  LIS +   AH  +L
Sbjct: 24  KRGKRIRKKFATKGEAL-AFERHKLEEIQDKPWLGEEKDK-RSLNELISTWYN-AHGITL 80

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR------------KHTPSSAIQ 135
               R   +   +      G     + + +      E R            K  P +   
Sbjct: 81  DDGLRR--KDAMNHFYECMGKPLATEFSAQLFSQYREKRLKGELARSTRVTKVAPRTLNL 138

Query: 136 FLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
            L   R +F    R   +  +NP  SV   K +   +   T++ ++       + S   L
Sbjct: 139 ELAYFRAMFNELERLGEWKLLNPIKSVRAFKTEESEMAFLTRDQIELLLDECKKSSIECL 198

Query: 195 A--FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252
           A   +  L +G R S++    +  L  +  +    K     TV +       L     GK
Sbjct: 199 ATVVKICLSTGARWSEAEGLKLSQLTEHKITFIKTKGRKNRTVPISKELYDELPKK--GK 256

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYG 312
              F           +F    K    +    + +H +R   A+     G     L    G
Sbjct: 257 SGLFT------ACYAEFRRALKRSEIELPPGQLSHVLRHTFASHFMMKGGNILVLQRILG 310

Query: 313 WKTVDQAETYTK 324
              +     Y+ 
Sbjct: 311 HTDIKMTMRYSH 322


>gi|158425627|ref|YP_001526919.1| putative site-specific recombinase [Azorhizobium caulinodans ORS
           571]
 gi|158332516|dbj|BAF90001.1| putative site-specific recombinase [Azorhizobium caulinodans ORS
           571]
          Length = 327

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 43/305 (14%), Positives = 89/305 (29%), Gaps = 37/305 (12%)

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFES----YFDQIIRKSGDFD----YRK 113
            +P  +P    WL       AH   L+  ++ ++        + +    G          
Sbjct: 20  QAPDLQPAVEGWLARL----AHERRLSPKTQDAYARDLTVVLNLLTLHLGHRPTVADMAA 75

Query: 114 ITTKHIRSGVESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170
           +    +R+ + +R+     P + ++ + + R   +   R+    +    +V  PK     
Sbjct: 76  LAPADVRAVLAARRMEGVAPRTLVRLMAAARSFGRHLEREGLGKVGALAAVRAPKVPRSL 135

Query: 171 IRPWTKEDMQQFKSFWSEGSQPRLA---------FEFLLYSGLRCSDSCRAGVQHL---Q 218
            +P +  D +      +   + R              L   GLR S++       +    
Sbjct: 136 PKPVSVSDAKALADPATRAGEDRAPWVLARDAAVIALLYGCGLRISEALGLTRSMMPEPG 195

Query: 219 NNIFSIKTQKTGTIITVELPDGFMKLLAMTPI-------GKETFFINNDKQKMNATQFSI 271
                  T K      V L     + +A             +  F       ++A    +
Sbjct: 196 GGDQITVTGKGNKTRMVPLLPQVTQAVADYAALCPYVLEPDKPLFRGAKGGPLSARIVQM 255

Query: 272 WFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             +      G+    + H +R   AT     G     +    G  ++   + YT   D  
Sbjct: 256 AVERMRGALGLPDSATPHALRHSFATHLLARGGELRAIQELLGHASLSTTQVYT-AVDAT 314

Query: 330 RLGIK 334
           RL   
Sbjct: 315 RLMDA 319


>gi|330993163|ref|ZP_08317100.1| Tyrosine recombinase xerC [Gluconacetobacter sp. SXCC-1]
 gi|329759714|gb|EGG76221.1| Tyrosine recombinase xerC [Gluconacetobacter sp. SXCC-1]
          Length = 349

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 50/161 (31%), Gaps = 19/161 (11%)

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQ----------NNIFSIKTQKTGTIITVELPDG 240
           +    F  L   GLR S++    V+ L            +       K G    V +   
Sbjct: 172 RDGALFMLLYGCGLRISEALGLDVRDLDRAQALGEGTKGDGVLRIQGKGGRERMVPVLPQ 231

Query: 241 FMKLLAM------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKF 292
            M  L         P      F+     ++ A       +     AG+  + + H +R  
Sbjct: 232 VMAALRRWRGVHPLPQADAPLFVGVRGGRLQAGIAQRAMRTWRHMAGLPEHATPHALRHS 291

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
            AT   + GA    +    G  ++   + YT  AD  RL  
Sbjct: 292 FATHLMEGGADLRVIQDLLGHASLSTTQRYT-LADEARLMD 331


>gi|315641029|ref|ZP_07896112.1| integrase/recombinase [Enterococcus italicus DSM 15952]
 gi|315483198|gb|EFU73711.1| integrase/recombinase [Enterococcus italicus DSM 15952]
          Length = 325

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 37/289 (12%), Positives = 86/289 (29%), Gaps = 46/289 (15%)

Query: 85  GSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVESRKHTPSSA----IQFLT 138
             ++  +    + +        K     + +  T          K     A       L 
Sbjct: 20  RGISQKTIKKHQKFLKLFFDFLKKEQIYFVEDVTPKSIRQFMLMKLEEGCAETYVNSHLR 79

Query: 139 SMRVLFKWAVRQEYV--AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-------- 188
           S+R  FK+ V ++Y+    NPC+ V+  K +   I+ +   ++++      +        
Sbjct: 80  SIRAYFKYCVDEDYIRYDRNPCVRVKWVKERKVIIQTFNDMEIKEMLRVAKKLTFFKPQK 139

Query: 189 -------------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
                          +  L    L+ +GLR ++       H+ N    ++  K      V
Sbjct: 140 MDKQHTGYQTKFTNQRDYLLLLILIDTGLRINEVMNLKDVHITNKELFVENGKGKKDRIV 199

Query: 236 ELPDG-FMKLLAMTPIG------------KETFFINNDKQKMNA---TQFSIWFKAKAT- 278
                 + + +    +                 F+  + ++ N     +  I    +   
Sbjct: 200 HCSPLIYKEYIKYKRVANSFFEYNEIENIDNYVFLTREGKQYNYILAERAIIKIGNQCKI 259

Query: 279 KAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           +  +  S H  R + A      G   + +    G  ++   E Y +  +
Sbjct: 260 RKSIRVSPHSFRHYFAQKLVRNGTDIYRIQKLLGHASIKTTEVYLRSLN 308


>gi|302381671|ref|YP_003817494.1| integrase [Brevundimonas subvibrioides ATCC 15264]
 gi|302192299|gb|ADK99870.1| integrase family protein [Brevundimonas subvibrioides ATCC 15264]
          Length = 314

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 45/296 (15%), Positives = 86/296 (29%), Gaps = 33/296 (11%)

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISF----ESYFDQIIRKSGDF---- 109
            +           L   +      AH   L+  +  ++      Y   + R  G+     
Sbjct: 4   PQLGGPDLTAAGALAAWLEHL---AHERRLSPRTLEAYGHIGRQYLAFLERHRGEAQRLP 60

Query: 110 DYRKITTKHIRSGVESRK--HTPSSAIQFLTSMRVLFKWAVRQEYVAINPC---LSVERP 164
           D   +T   +R+ +  R+    P +A     ++  +  + V  +     P      V  P
Sbjct: 61  DLGTVTAAELRAHLAERRSGDHPLNARSLSQTLSAIRTFHVFLDRRCDTPAPQLALVRGP 120

Query: 165 KRKTEGIRPWTKEDMQQFKSFWS--------EGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216
           + K    RP + +  +   +           E  +       L   GLR S++       
Sbjct: 121 RVKATLPRPVSADQARGLLAEPGLDPDVEPWEALRDTAVLSLLYGCGLRISEALSLTRAD 180

Query: 217 LQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK-------ETFFINNDKQKMNATQF 269
                    T K G    V +       +      +       +  F       ++A   
Sbjct: 181 APLPETLRITGKGGKTRLVPVLPVVRSAVDAALAAQPFPLSPPDALFRARRGGALSARHV 240

Query: 270 SIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
               +    + G+  SA  H +R   AT    AGA    +    G  ++   + YT
Sbjct: 241 QATVQRLRGRLGLPASATPHALRHSFATHLLGAGADLRSIQELLGHASLSTTQKYT 296


>gi|118581028|ref|YP_902278.1| integron integrase [Pelobacter propionicus DSM 2379]
 gi|118503738|gb|ABL00221.1| integron integrase [Pelobacter propionicus DSM 2379]
          Length = 468

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 45/307 (14%), Positives = 94/307 (30%), Gaps = 59/307 (19%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---- 126
              L++           +  +  ++ ++  Q  R   D   +++ T  ++  +       
Sbjct: 152 WDALLATMAAEIKVRHYSRKTLKTYANWSRQFQRFLKDKSPQELATADVKEYMTYLAVQC 211

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
           K   S+  Q   ++  L++  +++E+  +     V R K+        ++ ++    +  
Sbjct: 212 KVAASTQNQAFNALLFLYRHGLKREFGEL---RDVPRAKKSLYIPVVLSRPEIDAILAQL 268

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQH--LQNNIFSIKTQKTGTIITVELPDGFMKL 244
           S      L  + L   GLR  +  +  V+       I +I   K     TV LP+  +  
Sbjct: 269 SYPFN--LVVKLLFGCGLRQFECLQLRVRDFNFDAGILTIH-GKGKKDRTVPLPESLVPE 325

Query: 245 LAM------------TPIGKETFFIN---NDKQKMNATQFSI-WF--------------- 273
           L                 G +  F++     K      +F   WF               
Sbjct: 326 LRAQIKVVGELHDRDLSAGYDGVFLDDAVEKKYPKAPKEFVHQWFFPQKNLTLVAETGQR 385

Query: 274 KAK--------------ATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVD 317
           +                  +A + K  ++H  R   AT    AG     +    G  ++ 
Sbjct: 386 RRWHLHESELQEALYPAVRRAKIPKRVTSHTFRHSFATHLLQAGYDIRVIQTLLGHSSLK 445

Query: 318 QAETYTK 324
               YT 
Sbjct: 446 TTMIYTH 452


>gi|62290876|ref|YP_222669.1| site-specific tyrosine recombinase XerD [Brucella abortus bv. 1
           str. 9-941]
 gi|82700788|ref|YP_415362.1| site-specific tyrosine recombinase XerD [Brucella melitensis biovar
           Abortus 2308]
 gi|189025091|ref|YP_001935859.1| Phage integrase [Brucella abortus S19]
 gi|254690165|ref|ZP_05153419.1| site-specific tyrosine recombinase XerD [Brucella abortus bv. 6
           str. 870]
 gi|254694656|ref|ZP_05156484.1| site-specific tyrosine recombinase XerD [Brucella abortus bv. 3
           str. Tulya]
 gi|254731198|ref|ZP_05189776.1| site-specific tyrosine recombinase XerD [Brucella abortus bv. 4
           str. 292]
 gi|256258419|ref|ZP_05463955.1| site-specific tyrosine recombinase XerD [Brucella abortus bv. 9
           str. C68]
 gi|261214980|ref|ZP_05929261.1| integrase/recombinase xerD [Brucella abortus bv. 3 str. Tulya]
 gi|62197008|gb|AAX75308.1| XerD, integrase/recombinase [Brucella abortus bv. 1 str. 9-941]
 gi|82616889|emb|CAJ11988.1| Phage integrase:Phage integrase, N-terminal SAM-like [Brucella
           melitensis biovar Abortus 2308]
 gi|189020663|gb|ACD73385.1| Phage integrase [Brucella abortus S19]
 gi|260916587|gb|EEX83448.1| integrase/recombinase xerD [Brucella abortus bv. 3 str. Tulya]
          Length = 307

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 43/272 (15%), Positives = 92/272 (33%), Gaps = 32/272 (11%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHT---PSSAIQFLTS 139
              A N+  S+    +    +      +  +  T HIR  +++       P+S  + L++
Sbjct: 18  RGAAQNTLESYRRDLEAAAEELAAKGVNLAEAETGHIRMTLDTMAAQGFAPTSQARRLSA 77

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS------------ 187
           +R  F++   + +   +P   +  PK++    +  + E++ +     +            
Sbjct: 78  LRQFFRFLYSEGFRQDDPTGILYAPKKQKPLPKIMSVENVGKLLDRAALEANEAAEPGER 137

Query: 188 -EGSQPRLAFEFLLYSGLRCSDSCRAGVQ-HLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
            +  +     E L  +GLR S+     V     ++ F +   K      V L       L
Sbjct: 138 IKALRLHALLETLYATGLRVSELVGLPVTVARTDHRFLLVRGKGSKDRMVPLSRKARDAL 197

Query: 246 AM-------TPIGKETFFIN---NDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKF 292
                     P   +  ++    ++   +    F+   K  A +AG+  S    H +R  
Sbjct: 198 QKFLTLRDSLPGSDDNPWLFPAFSESGHLARQVFARELKGLAARAGLAASSASPHVLRHA 257

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324
            A+     GA    +    G   +   + YT 
Sbjct: 258 FASHLLQNGADLRTVQQLLGHADISTTQIYTH 289


>gi|307277175|ref|ZP_07558279.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX2134]
 gi|312905113|ref|ZP_07764234.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX0635]
 gi|306506105|gb|EFM75271.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX2134]
 gi|310631503|gb|EFQ14786.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX0635]
          Length = 393

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 45/309 (14%), Positives = 97/309 (31%), Gaps = 40/309 (12%)

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKH 118
           Y    +    T + L +E+       S+  ++      Y + QI+   G      I+  +
Sbjct: 71  YGVKKKAPDMTFEDLYNEWIAHQR-TSVKASTIAISVRYANNQILPAFGKLKLSNISVPY 129

Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS--VERPKRKTEGIRPWTK 176
            +  V+       S          + ++ V  +Y+  NP     + R K   +  + ++K
Sbjct: 130 CQKVVDEWHSKYESYDYMRKQTAQILRYGVAMQYIDNNPMEKTLLPRKKEYEKNRKFYSK 189

Query: 177 EDMQQFKSFWSE--GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--------------- 219
           E++      + +    +    F  L Y+G+R S+      + +                 
Sbjct: 190 EELNDLLDAFKDFGNMKQYAFFRLLAYTGMRKSEVLALQWKDIDTFNKELHVNKTLAVDE 249

Query: 220 -NIFSIKTQKTGTIITVELPD----------------GFMKLLAMTPIGKETFFINNDKQ 262
                I++ KT     V   D                 ++KL   T   ++  F      
Sbjct: 250 FGNVIIQSPKTRASRRVISLDTETLSILNNWKLQQKEEYLKLGYNTSSKEQHVFTTVKNT 309

Query: 263 KMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-E 320
                  + W +    K  + + + HG R   A++  +AG +   +    G +      +
Sbjct: 310 LYIPNTVNDWLRYILKKYNLPRITPHGFRHTHASLLLEAGESVKVVQQRLGHENSKVTLD 369

Query: 321 TYTKGADRI 329
            Y    +  
Sbjct: 370 IYAHITNNA 378


>gi|260170350|ref|ZP_05756762.1| transposase [Bacteroides sp. D2]
          Length = 371

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 48/288 (16%), Positives = 102/288 (35%), Gaps = 44/288 (15%)

Query: 88  AVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRV 142
              +  ++ S    + +     D     I  + IR   +       T ++   +L ++R 
Sbjct: 96  KEGTAAAYRSTRLSLAKFLNGSDIRMSAIDLRFIRQYEDFLYNSGVTGNTVSYYLRNLRT 155

Query: 143 LFKWAVRQEY----------VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
           L+  AV   Y              P  +V+R           T++D+Q   +   E    
Sbjct: 156 LYNQAVTDGYHPHGEYPFAKAQTRPAKTVKR---------ALTRKDLQALANLGLEEMPE 206

Query: 193 -RLAFEFLLYS----GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
            + A +  L+S    G+   D        + N + +    K+  +I + +     +L+  
Sbjct: 207 LKFARDLYLFSFYAQGMAFVDIVLLRKSDIYNGVLTYSRHKSKQLIRIAVTPQMQELMDK 266

Query: 248 TPIGKETFF-------INNDKQ-KMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS 297
                E  F       ++  KQ +++  + + + K  A    +    + +  R   AT++
Sbjct: 267 YETEGEYVFPIISEKSLSEYKQYRLSLGRINRYLKKIAVMIDIAVPLTTYTARHTWATLA 326

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345
            D GA    + A  G  + +    Y K  D  +L      +++S+V +
Sbjct: 327 RDYGAPVSVISAGLGHTSEEMTRIYLKEFDVSQL-----DKVNSMVTN 369


>gi|241992549|gb|ACS73618.1| IntI1 [uncultured bacterium]
          Length = 330

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 50/331 (15%), Positives = 102/331 (30%), Gaps = 60/331 (18%)

Query: 49  SALTGSTPKREYINSPRKKPTTLKW--LISEYRKSAHWGSLAVNSRISFESYFDQIIRKS 106
           +A      +R    +P  +   L+   L+ + R+       ++ +  ++  +    IR  
Sbjct: 4   AAPRSLPDRRLLRPAPVVELPALRAVRLLDQMRERLRMLHYSMRTEEAYLHWCKAFIRFH 63

Query: 107 GDFDYRKITTKHIRSGV----ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162
           G     ++    + + +      R   PSS  Q L+++  L+   + Q+         + 
Sbjct: 64  GRRHPAEMAGPEVEAFLTHLAADRGLAPSSHRQALSAVLFLYGKVLGQQLP---WMQDIG 120

Query: 163 RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-- 220
           RP  K       +  ++++  +  + G    LA + L  +GLR +++ +  V+ L     
Sbjct: 121 RPVPKRRLPVVLSVPEVREVLAQMT-GEHLLLA-QLLYGTGLRITEALQLRVKDLDFGHR 178

Query: 221 IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN--------------------- 259
              ++  K      V LP   M  L          +  +                     
Sbjct: 179 AVIVREGKGAKDRVVMLPQSLMPALREQLGRVRAVWAADVEAGTAGVEMPHALDRKYPRM 238

Query: 260 ------------------------DKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFS 293
                                    +  +    F   FK     AG+ K  + H +R   
Sbjct: 239 GASWAWFWVFPQDHHSTDPRSGVIRRHHLYDQTFQRAFKRAVVAAGIEKPATPHTLRHSF 298

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324
           AT    +G+    +    G   V     YT 
Sbjct: 299 ATHLLQSGSDIRTVQELLGHADVATTMIYTH 329


>gi|289645001|ref|ZP_06477038.1| integrase family protein [Frankia symbiont of Datisca glomerata]
 gi|289505195|gb|EFD26257.1| integrase family protein [Frankia symbiont of Datisca glomerata]
          Length = 446

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 51/388 (13%), Positives = 100/388 (25%), Gaps = 88/388 (22%)

Query: 22  IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKS 81
             Y     GR IR    +  T+  A+         +      P     T+   +  + + 
Sbjct: 41  RAYVVTSDGREIR-RSVYGHTWEEAHEKLTRLQAARMNGARVPVGG-MTVGDYLLHWLRE 98

Query: 82  AHWGSLAVNSRISFES-YFDQIIRKSGDFDYRKITTKHIRSGVESRKH------------ 128
                L   +  S+E+     ++   G      +    IR+     K             
Sbjct: 99  IVRDRLRDTTYRSYETVILVHLVPVLGRKKLASLQPSDIRAAFNRLKTVCRCCALGKDAA 158

Query: 129 -------------TPSSAIQFL---------------------------TSMRVLFKWAV 148
                         P    + +                             +RV  + A 
Sbjct: 159 REERAQHTRAARTRPRKNARVIPGARCCAKTPPECCGEFLADGTIRYAHRVLRVALQDAF 218

Query: 149 RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD 208
            +  V  N   ++    R      PWT  + ++F    + G +    +   L  GLR  +
Sbjct: 219 LEGLVTQNVAKNLRLNHRYRPHFTPWTSGEAREFLE-AARGGRLYALYVLALMLGLRKGE 277

Query: 209 SCRAGVQHLQNNIFSIKTQ---------------KTGTIITV---------------ELP 238
                   +  +   ++ +               KT +   V               E  
Sbjct: 278 LLGLRWSDIDLDRGVLRVRTSLQRVNGQLRLGPVKTDSSARVVAMSASCVRVLRGHKERQ 337

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATIS 297
           D        T    +  F +     +     +  F A   +AG+ +   H +R   AT+ 
Sbjct: 338 DTERDAAGRTWTDHDLVFASARGTPLEPRNVTRQFDALCRRAGLRRIRFHDLRHTCATLL 397

Query: 298 ADAGATAHELMATYGWKTVDQAE-TYTK 324
            + G T   +    G  +    +  Y +
Sbjct: 398 YEQGVTIDNIQNVLGHSSPTITKMIYVE 425


>gi|253565899|ref|ZP_04843353.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5]
 gi|251945003|gb|EES85441.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5]
 gi|301164268|emb|CBW23826.1| putative integrase [Bacteroides fragilis 638R]
          Length = 403

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 49/299 (16%), Positives = 100/299 (33%), Gaps = 51/299 (17%)

Query: 83  HWGS--LAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESRKHTPSSAIQ 135
            W    +   +  +++S +  + +  G  + +     H      R  +     T ++   
Sbjct: 115 EWKKSIMKNGTAAAYQSTYASLAKYIGKKEVKISQVNHRFVTCYRDFLSKNGATENTIGY 174

Query: 136 FLTSMRVLFKWAVRQEYVA----------INPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +L + R L+  AV+   V+            PC +V+R            +E M +  + 
Sbjct: 175 YLRNFRALYNLAVKDGLVSPCDYPFKEICTKPCKTVKR---------ALDREQMVKL-AC 224

Query: 186 WSEGSQPRLAFEFLLYS------GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239
            S  S   L     L+       G+   D      +++  N    +  K+  +I + +  
Sbjct: 225 LSLHSDAELKRSLDLFLFGFYAQGMAFVDIAYLKWKNISGNRIIYRRHKSKQLIQIVITP 284

Query: 240 GFMKLLA----MTPIGKETFF------INNDKQKMNATQFSIW-FKAKATKAGVN--KSA 286
               ++      T   +E  F       N   Q   A   +    K  + K  ++   + 
Sbjct: 285 QIKSIIDEHGNNTNNAEEYVFSVIKNNANEYTQYRTALGRTNRHLKIISAKLKIDPPLTT 344

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345
           +  R   AT++ + GA    + A  G    +    Y K  D   L      RI+ +V++
Sbjct: 345 YTARHTWATLAREYGAPVSAISAGLGHTKEEMTLVYLKELDLAPL-----HRINKMVNN 398


>gi|255036128|ref|YP_003086749.1| integrase family protein [Dyadobacter fermentans DSM 18053]
 gi|254948884|gb|ACT93584.1| integrase family protein [Dyadobacter fermentans DSM 18053]
          Length = 415

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 42/281 (14%), Positives = 104/281 (37%), Gaps = 24/281 (8%)

Query: 85  GSLAVNSRISFE------SYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP----SSAI 134
              + N+ I +E        F +   +  D +  ++    I       K       ++ +
Sbjct: 127 KEFSKNTYIRYETSLLHSRAFIRWKYQCDDLEITQLDFDFIADYEFWLKSQRGCNHNTTM 186

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ--- 191
           ++L + + +    V++ ++  +P +S +  K   +     ++ ++    S     ++   
Sbjct: 187 KYLANFKKIVLSCVKRGWLPRDPFVSFKLGKHDVD-REVLSEAELFSIMSKKMPTTRLDQ 245

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHL-----QNNIFSIKTQKTGTIITVELPDGFMKLLA 246
            R  F F  Y+GL  +D  +     +     +N   ++K QKT T   + L D   K+L 
Sbjct: 246 VRDIFVFCCYTGLSYADVYKLKRSEVILGVDKNRWITLKRQKTDTASRIPLLDSAAKILD 305

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSAT-ISADAGAT 303
                 +    +     ++  + + + K       +++  + H  R   AT ++   G  
Sbjct: 306 KYKDHAQCAVADQLLPVLSNQKMNSYLKEIGDLCHIDRNITFHLARHTFATTVTLANGVA 365

Query: 304 AHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
              +    G K +   + Y K  D+     ++ + + +V+ 
Sbjct: 366 IESVSKVLGHKNIRTTQHYAKVIDKK--VGEDMKALGAVLA 404


>gi|315146182|gb|EFT90198.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX4244]
          Length = 389

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 60/351 (17%), Positives = 120/351 (34%), Gaps = 45/351 (12%)

Query: 9   PFVTKERTRHG---KIIY-YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64
            +V     + G      Y Y+     R+       ES    A   AL       E  N+ 
Sbjct: 18  KYVFSYSNKKGTFWGYRYPYYNSLKHRKEASKRGFESE--RAANKALLKIQYDLETQNTS 75

Query: 65  --RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIR- 120
               K  T+   I  +   A   + +V+++ + ES     I    G+     +     + 
Sbjct: 76  FIENKQLTIDEWIKVWIPYAQ-DNWSVSTKQNIESAIKFHISPLIGNQKLSSLNKITYKR 134

Query: 121 ----SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
                  +  K+T S+   +   +  +   AV  + +  N     +     +  +R ++K
Sbjct: 135 EFIDKLRQENKYTESTIQTWHKIVMRMINAAVHNQIIPSNTLTGFKF--DLSNNVRSFSK 192

Query: 177 EDMQQFKSFWS-EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ------------NNIFS 223
           +++Q+F +    E  Q ++ F  LL SG+R  +        +              +   
Sbjct: 193 KELQRFIAVLENEDIQTQVIFLTLLKSGMRKGELMGLRWSDIDLNEKYFDINSTRGDYGE 252

Query: 224 IKTQKTGTIITVELPDGFMKLLAMTP--------------IGKETFFINNDKQKMNATQF 269
            K +   +I  V   +  + L+                    K+ F +++    +  ++ 
Sbjct: 253 NKPKTKTSIRKVYFDNSLLTLIKKYKNHEKERLFREGIILSDKDYFILSSRNLPIKQSRI 312

Query: 270 SIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
           +  F+    KA V N + HG+R   AT   +AGA    +    G K ++  
Sbjct: 313 TYMFRLLCEKAEVQNITVHGLRHTHATFLIEAGANIKYVSTRLGHKNINIT 363


>gi|281492428|ref|YP_003354408.1| phage integrase [Lactococcus lactis subsp. lactis KF147]
 gi|281376092|gb|ADA65583.1| Phage integrase [Lactococcus lactis subsp. lactis KF147]
          Length = 399

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 53/323 (16%), Positives = 95/323 (29%), Gaps = 56/323 (17%)

Query: 57  KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKIT 115
           K+      ++   T   +   + +        V S     S  D   I   G+    KIT
Sbjct: 59  KKNGNTKGKESLETFGEVAESFFELYK-LQQKVGSIRQMRSNLDTYAIPAFGNKRISKIT 117

Query: 116 TKHIRSG---VESRKHTPSSAIQF------------LTSMRVLFKWAVRQEYVAINPCLS 160
           T HI+            P    Q             L  +  +F+ A+    +  NPC S
Sbjct: 118 TAHIQKQVIEWAKNAAEPLGGKQKRDVGSGKDYKLQLNVINRIFQHALSLGIIDRNPCHS 177

Query: 161 VERPKRKTEGI----RPWTKEDMQQFKSFWSEGSQPR-------LAFEFLLYSGLRCSDS 209
           V  PK K +      + +TK ++ +  S        +            L+ SGLR  ++
Sbjct: 178 VIIPKVKIDKPNKEVKFYTKTELSELFSHIESLDNTKWSTQYFNALIRLLVASGLRIGEA 237

Query: 210 CRAGVQHLQNNIFSIKTQKT--------------GTIITVELPDGFMKLLAM-------- 247
                  +  +  ++   KT               +   + +    +  L          
Sbjct: 238 MALEWFDVDLDNQTVSVSKTTVQRTVIQDTPKTNKSNRVISIDSKAVSTLKRWYFFQKKH 297

Query: 248 ----TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGA 302
                   +   F       M+    +   K     A +   S HG R   A++  +AG 
Sbjct: 298 FMSLGNPHQSLVFPTWQGNVMDYHGLNYRLKKIEDAAKLTSLSFHGFRHSHASLCLNAGM 357

Query: 303 TAHELMATYGWKTVDQA-ETYTK 324
           T   +    G  T+    + Y+ 
Sbjct: 358 TYKVIQERLGHSTLQMTMDLYSH 380


>gi|300860289|ref|ZP_07106376.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TUSoD Ef11]
 gi|300849328|gb|EFK77078.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TUSoD Ef11]
 gi|323481177|gb|ADX80616.1| phage integrase family protein [Enterococcus faecalis 62]
          Length = 382

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 60/351 (17%), Positives = 120/351 (34%), Gaps = 45/351 (12%)

Query: 9   PFVTKERTRHG---KIIY-YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64
            +V     + G      Y Y+     R+       ES    A   AL       E  N+ 
Sbjct: 11  KYVFSYSNKKGTFWGYRYPYYNSLKHRKEASKRGFESE--RAANKALLKIQYDLETQNTS 68

Query: 65  --RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIR- 120
               K  T+   I  +   A   + +V+++ + ES     I    G+     +     + 
Sbjct: 69  FIENKQLTIDEWIKVWIPYAQ-DNWSVSTKQNIESAIKFHISPLIGNQKLSSLNKITYKR 127

Query: 121 ----SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
                  +  K+T S+   +   +  +   AV  + +  N     +     +  +R ++K
Sbjct: 128 EFIDKLRQENKYTESTIQTWHKIVMRMINAAVHNQIIPSNTLTGFKF--DLSNNVRSFSK 185

Query: 177 EDMQQFKSFWS-EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ------------NNIFS 223
           +++Q+F +    E  Q ++ F  LL SG+R  +        +              +   
Sbjct: 186 KELQRFIAVLENEDIQTQVIFLTLLKSGMRKGELMGLRWSDIDLNEKYFDINSTRGDYGE 245

Query: 224 IKTQKTGTIITVELPDGFMKLLAMTP--------------IGKETFFINNDKQKMNATQF 269
            K +   +I  V   +  + L+                    K+ F +++    +  ++ 
Sbjct: 246 NKPKTKTSIRKVYFDNSLLTLIKKYKNHEKERLFREGIILSDKDYFILSSRNLPIKQSRI 305

Query: 270 SIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
           +  F+    KA V N + HG+R   AT   +AGA    +    G K ++  
Sbjct: 306 TYMFRLLCEKAEVQNITVHGLRHTHATFLIEAGANIKYVSTRLGHKNINIT 356


>gi|229545371|ref|ZP_04434096.1| phage integrase family site specific recombinase [Enterococcus
           faecalis TX1322]
 gi|229549618|ref|ZP_04438343.1| phage integrase family site specific recombinase [Enterococcus
           faecalis ATCC 29200]
 gi|255972315|ref|ZP_05422901.1| predicted protein [Enterococcus faecalis T1]
 gi|256962649|ref|ZP_05566820.1| site-specific recombinase [Enterococcus faecalis HIP11704]
 gi|257079417|ref|ZP_05573778.1| site-specific recombinase [Enterococcus faecalis JH1]
 gi|257090319|ref|ZP_05584680.1| predicted protein [Enterococcus faecalis CH188]
 gi|307272763|ref|ZP_07554010.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0855]
 gi|307295840|ref|ZP_07575672.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0411]
 gi|312902821|ref|ZP_07762025.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0635]
 gi|229305283|gb|EEN71279.1| phage integrase family site specific recombinase [Enterococcus
           faecalis ATCC 29200]
 gi|229309478|gb|EEN75465.1| phage integrase family site specific recombinase [Enterococcus
           faecalis TX1322]
 gi|255963333|gb|EET95809.1| predicted protein [Enterococcus faecalis T1]
 gi|256953145|gb|EEU69777.1| site-specific recombinase [Enterococcus faecalis HIP11704]
 gi|256987447|gb|EEU74749.1| site-specific recombinase [Enterococcus faecalis JH1]
 gi|256999131|gb|EEU85651.1| predicted protein [Enterococcus faecalis CH188]
 gi|306496171|gb|EFM65750.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0411]
 gi|306510377|gb|EFM79400.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0855]
 gi|310633875|gb|EFQ17158.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0635]
 gi|315028564|gb|EFT40496.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX4000]
 gi|315159447|gb|EFU03464.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0312]
 gi|315161436|gb|EFU05453.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0645]
 gi|315576751|gb|EFU88942.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0630]
          Length = 389

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 60/351 (17%), Positives = 120/351 (34%), Gaps = 45/351 (12%)

Query: 9   PFVTKERTRHG---KIIY-YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64
            +V     + G      Y Y+     R+       ES    A   AL       E  N+ 
Sbjct: 18  KYVFSYSNKKGTFWGYRYPYYNSLKHRKEASKRGFESE--RAANKALLKIQYDLETQNTS 75

Query: 65  --RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIR- 120
               K  T+   I  +   A   + +V+++ + ES     I    G+     +     + 
Sbjct: 76  FIENKQLTIDEWIKVWIPYAQ-DNWSVSTKQNIESAIKFHISPLIGNQKLSSLNKITYKR 134

Query: 121 ----SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
                  +  K+T S+   +   +  +   AV  + +  N     +     +  +R ++K
Sbjct: 135 EFIDKLRQENKYTESTIQTWHKIVMRMINAAVHNQIIPSNTLTGFKF--DLSNNVRSFSK 192

Query: 177 EDMQQFKSFWS-EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ------------NNIFS 223
           +++Q+F +    E  Q ++ F  LL SG+R  +        +              +   
Sbjct: 193 KELQRFIAVLENEDIQTQVIFLTLLKSGMRKGELMGLRWSDIDLNEKYFDINSTRGDYGE 252

Query: 224 IKTQKTGTIITVELPDGFMKLLAMTP--------------IGKETFFINNDKQKMNATQF 269
            K +   +I  V   +  + L+                    K+ F +++    +  ++ 
Sbjct: 253 NKPKTKTSIRKVYFDNSLLTLIKKYKNHEKERLFREGIILSDKDYFILSSRNLPIKQSRI 312

Query: 270 SIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
           +  F+    KA V N + HG+R   AT   +AGA    +    G K ++  
Sbjct: 313 TYMFRLLCEKAEVQNITVHGLRHTHATFLIEAGANIKYVSTRLGHKNINIT 363


>gi|119952269|ref|YP_949919.1| integrase [Arthrobacter aurescens TC1]
 gi|119951399|gb|ABM10309.1| Integrase [Arthrobacter aurescens TC1]
          Length = 374

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 55/334 (16%), Positives = 96/334 (28%), Gaps = 29/334 (8%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEY 78
           G+    F    G+R   P+   +        A       R      R           ++
Sbjct: 16  GRWQASFIGPAGKRQAAPHTFATRADADRWLAAVELDLSRGTWVDERAASVPFLDYAEQW 75

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQ 135
                   L   SR + E      +        R +T   +R+        K   +S  Q
Sbjct: 76  LNDNR--RLGPRSRETHERNLRLHLAPLATMPVRSLTPTLVRTWYATAMRGKGGNTSIDQ 133

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195
               +R +   AVR+  +A NPC        + +     +   +           +   A
Sbjct: 134 SYRLLRAILNTAVREGLLAKNPCQIPGAGNTRAKRRTVASPTQVADLIREIPGPYKA--A 191

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII------------------TVEL 237
                + GLR  +        L     ++   +    +                  TV L
Sbjct: 192 VALAAWGGLRRGEILALRRADLDLEAMTVSVHRNQVELLSSRSRFDAKPKTDAGYRTVAL 251

Query: 238 PDGFMKLLA---MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFS 293
           P   + LL     T  G+   F+++    M     +  F     + G+     H +R   
Sbjct: 252 PPHVIPLLRDHLRTYAGETRVFVSSTGGPMPGDSLTQAFSRARDRLGMTGFRFHDLRHTG 311

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
            T++A  GAT  +LM   G  +   A  Y    +
Sbjct: 312 QTLAAATGATLADLMKRLGHSSPAAAMRYLHTVN 345


>gi|66396051|ref|YP_240411.1| ORF011 [Staphylococcus phage 71]
 gi|258423471|ref|ZP_05686362.1| integrase [Staphylococcus aureus A9635]
 gi|62636470|gb|AAX91581.1| ORF011 [Staphylococcus phage 71]
 gi|257846532|gb|EEV70555.1| integrase [Staphylococcus aureus A9635]
          Length = 349

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 45/291 (15%), Positives = 95/291 (32%), Gaps = 39/291 (13%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFES-YFDQIIRKSGDFDYRKITT---KHIRSGVES 125
           T  ++   Y +++    L   ++   ++ Y      K G     KIT    +  R  +  
Sbjct: 59  TFDYVFHHYLENS---DLRPKTKRRKQNEYHKHFKAKFGHIKMNKITQNQCQEFRKYLIE 115

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
              + +SA    +  +V+  +A +   +  +P +S++   R     +   +E+ ++ +  
Sbjct: 116 NVASTNSARTIWSGFKVVINYAKKYFGLRTDPTISIKPIPRVKPKPKFMMREEFEE-RIK 174

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH---------------LQNNIFSIKTQKTG 230
             E    R  F  + Y+GLR  ++                      + N     + +   
Sbjct: 175 DIEEQDYRELFTLMFYTGLRIGEAMALVWTDYNKYKKEISINKTMDISNRTIYPRPKTDS 234

Query: 231 TIITVELPD----------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280
           +   V LP              K L      +  F        M    +S   K    KA
Sbjct: 235 SEDIVPLPKFINTMLTERHQREKELNKYFDERSYFIF----GGMAPKHYSHVQKKF-QKA 289

Query: 281 GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIR 330
             + + H +R   A+  A+ G     L +      + +   TY+    + +
Sbjct: 290 FPHYNIHALRHSYASYLANNGVDIFVLQSLMRHAQITETMGTYSHLYTQKK 340


>gi|323972425|gb|EGB67632.1| phage integrase [Escherichia coli TA007]
          Length = 387

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 44/215 (20%), Positives = 82/215 (38%), Gaps = 24/215 (11%)

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           ++    L+ ++ L + A  +E+  ++    ++ P+ K + IR     + Q+      E  
Sbjct: 144 ATKATHLSFIKALLR-AAEREWKMLDKAPIIKVPQPKNKRIRWLEPHEAQRLIDECPEPL 202

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGFMKLLA 246
           +     EF L +GLR S+      Q +         + +  K+   I V L D   ++L 
Sbjct: 203 KS--VVEFALATGLRRSNIINLEWQQIDMQRRVAWINPEESKSNRAIGVALNDTACRVLK 260

Query: 247 MTPIGKETFFINNDK--------------QKMNATQFSIWFKAKATKAGVNK-SAHGVRK 291
              IG    ++   K              +KM     + W KA   +AG++    H +R 
Sbjct: 261 KQ-IGNHHRWVFVYKESCTKPDGTKAPTVRKMRYDANTAW-KAALRRAGIDDFRFHDLRH 318

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
             A+    AG     L    GW++++    Y   A
Sbjct: 319 TWASWLVQAGVPLSVLQEMGGWESIEMVRRYAHLA 353


>gi|167761671|ref|ZP_02433798.1| hypothetical protein BACSTE_00005 [Bacteroides stercoris ATCC
           43183]
 gi|167700458|gb|EDS17037.1| hypothetical protein BACSTE_00005 [Bacteroides stercoris ATCC
           43183]
          Length = 352

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 98/278 (35%), Gaps = 30/278 (10%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVESRKH 128
              IS +++     SL  +++ +  S    +     D  +  +T          ++ + +
Sbjct: 56  SSFISFFKQEVSNSSLKDSTKRNHLSTLLLLQEFKRDIVFSDLTFEFVSSFEYFLQQKGY 115

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINP-CLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
             ++  + +  ++     A+ +EY+ I        + K           E+++Q +    
Sbjct: 116 HTNTIAKHMKHLKRHINIAINKEYIEIQKYAFRKYKIKTVENKHTHLVPEELEQLERLSL 175

Query: 188 EGSQPRL-----AFEFLLYSGLRCSDSCRAGVQHLQN----NIFSIKTQKTGTIITVELP 238
                +L     AF F  Y+G+R SD      +++ +         K+ KTGT + + L 
Sbjct: 176 TDKHMKLQKSLDAFLFCCYAGMRYSDFTNLSKKNIVDINQETWLIYKSVKTGTEVRLPL- 234

Query: 239 DGFMKLLAMTPIGKETFFINNDKQ----KMNATQFSIWFKA---KATKAGVNK--SAHGV 289
                   +   GK    +N  +            S   K     A  AG++K  S H  
Sbjct: 235 -------YLLFAGKGIVILNKYRNNLEDFFRLRDNSNINKDLIIIAKLAGLSKKISFHTA 287

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           R  +AT+    G     +    G K+V   + YT   D
Sbjct: 288 RHTNATLLIYNGVNITTVQKLLGHKSVKTTQVYTNIMD 325


>gi|167762114|ref|ZP_02434241.1| hypothetical protein BACSTE_00465 [Bacteroides stercoris ATCC
           43183]
 gi|167765046|ref|ZP_02437167.1| hypothetical protein BACSTE_03440 [Bacteroides stercoris ATCC
           43183]
 gi|167697715|gb|EDS14294.1| hypothetical protein BACSTE_03440 [Bacteroides stercoris ATCC
           43183]
 gi|167700073|gb|EDS16652.1| hypothetical protein BACSTE_00465 [Bacteroides stercoris ATCC
           43183]
          Length = 401

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 98/278 (35%), Gaps = 30/278 (10%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVESRKH 128
              IS +++     SL  +++ +  S    +     D  +  +T          ++ + +
Sbjct: 105 SSFISFFKQEVSNSSLKDSTKRNHLSTLLLLQEFKRDIVFSDLTFEFVSSFEYFLQQKGY 164

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINP-CLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
             ++  + +  ++     A+ +EY+ I        + K           E+++Q +    
Sbjct: 165 HTNTIAKHMKHLKRHINIAINKEYIEIQKYAFRKYKIKTVENKHTHLVPEELEQLERLSL 224

Query: 188 EGSQPRL-----AFEFLLYSGLRCSDSCRAGVQHLQN----NIFSIKTQKTGTIITVELP 238
                +L     AF F  Y+G+R SD      +++ +         K+ KTGT + + L 
Sbjct: 225 TDKHMKLQKSLDAFLFCCYAGMRYSDFTNLSKKNIVDINQETWLIYKSVKTGTEVRLPL- 283

Query: 239 DGFMKLLAMTPIGKETFFINNDKQ----KMNATQFSIWFKA---KATKAGVNK--SAHGV 289
                   +   GK    +N  +            S   K     A  AG++K  S H  
Sbjct: 284 -------YLLFAGKGIVILNKYRNNLEDFFRLRDNSNINKDLIIIAKLAGLSKKISFHTA 336

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           R  +AT+    G     +    G K+V   + YT   D
Sbjct: 337 RHTNATLLIYNGVNITTVQKLLGHKSVKTTQVYTNIMD 374


>gi|295099125|emb|CBK88214.1| Site-specific recombinase XerD [Eubacterium cylindroides T2-87]
          Length = 405

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 62/388 (15%), Positives = 107/388 (27%), Gaps = 74/388 (19%)

Query: 2   TPSLRLPPFVTKERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKRE 59
           T   R+P + T E    G   Y  Y     G+++ L            ++AL        
Sbjct: 3   TKRSRIPRYGTVEI--KGHTYYKTYVMDSDGKQVALYEKTREALYDKELAALEQIDNATF 60

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISF-ESYFDQIIRKSGDFDYRKITTKH 118
              SP  K    KWL+ +   S H   +   +   +       II   GD     +T   
Sbjct: 61  RRKSPTVKEYCEKWLLMQ---SVH---VRATTLTDYTSKVRRHIISSLGDTRMGDVTLDD 114

Query: 119 IRSGVESRKHTPSSAIQFLTSM-RVLFKWAVRQEYVAINPCLSV--ERPKRKTEGIRPWT 175
           I+  +       +S  + +  + + +F+ A+  + +  NP + +  E      +  +  T
Sbjct: 115 IQIALVPVSKKSASVYKSVVILYKSIFRAAMDSKVIDKNPTIFLTAEGGGVPQQEKQALT 174

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL------------------ 217
            E  ++      +G Q        LY+GLR  +        +                  
Sbjct: 175 DEQAKRLLEAV-QGLQTHTFVMLGLYAGLRREEILALQWDSVFLNADAPYLKVCRAWHTE 233

Query: 218 QNNIFSIKTQKTG-TIITVELPDGFMKLLA--MTPIGKETFFINNDKQKMNATQF----- 269
            N    +   KT      + LP+   + L         E    N D   +  TQF     
Sbjct: 234 HNRPVILTELKTKAAERKIPLPENLAECLREVKAASTSEYVICNGDGNPLTYTQFKRLWQ 293

Query: 270 -----------------SIWFKA-KATKAGVNK--------------SAHGVRKFSATIS 297
                                K       G                 + H +R    T  
Sbjct: 294 FVVTRTAKERSYYRYENGKRVKHTVCPVLGEKAAHNGKVVYSLDFEVTPHQLRHTYITNL 353

Query: 298 ADAGATAHELMATYGWKTVDQA-ETYTK 324
             A      +    G +      + Y K
Sbjct: 354 IHASVDPKTVQYLAGHQNSKITMDIYAK 381


>gi|145224480|ref|YP_001135158.1| phage integrase family protein [Mycobacterium gilvum PYR-GCK]
 gi|145216966|gb|ABP46370.1| phage integrase family protein [Mycobacterium gilvum PYR-GCK]
          Length = 379

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 59/355 (16%), Positives = 101/355 (28%), Gaps = 36/355 (10%)

Query: 20  KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK---PTTLKWLIS 76
                +    GRR + P    +        A   S    +    P       TT      
Sbjct: 24  GYRARYFGPDGRRHKAPVLFLTKTDARAWLAQRHSEIVAQQWTPPNAVEVPKTTFTEYAD 83

Query: 77  EYRKSAHWGS--LAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVES-RKHTPSS 132
           ++  +       L   +R  +++  D  I    G      IT   +R          P+ 
Sbjct: 84  QWLLTRQVAGRPLKDRTREHYQALLDDHITATFGALPLASITADDVRQWYARTLTDKPTM 143

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPC--LSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
                  +R +   AV    +++NPC        KR  +  RP T  ++           
Sbjct: 144 RSHAYGLLRTILATAVSDGKISVNPCSIRGAGTAKRVHKV-RPATVGEIGTIADAMPA-- 200

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQ---------------NNIFSIKTQKTGTII-T 234
           Q  L      +  +R  +      + +                ++ F + T K+   I  
Sbjct: 201 QWSLMVLLAAWLAMRFGELTELRRKDIDLADEVVRVRRAVVRTDDGFKVTTPKSDAGIRD 260

Query: 235 VELPDGFMKLLAM------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAH 287
           + +P   +  +                F       +        F     +A   +   H
Sbjct: 261 IAIPPHLIPPIEAHLSQHVGAKADALLFPAVGGGHLAPATLYRRFYTARERANRKDLRWH 320

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD-RIRLGIKNSRRISS 341
            +R   A ++A  GAT  ELMA  G  T   A  Y   A  R R       +I+ 
Sbjct: 321 DLRHSGAVLAAATGATLAELMARLGHSTPQAALRYQHAAQGRDRQIAALLSKIAE 375


>gi|254426414|ref|ZP_05040130.1| Phage integrase, N-terminal SAM-like domain protein [Synechococcus
           sp. PCC 7335]
 gi|196187828|gb|EDX82794.1| Phage integrase, N-terminal SAM-like domain protein [Synechococcus
           sp. PCC 7335]
          Length = 339

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 43/292 (14%), Positives = 84/292 (28%), Gaps = 37/292 (12%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
              + E+        +  N++ ++               +  +    +    E  K+ P+
Sbjct: 33  GDWVDEFLGD---REIRPNTKKAYTRQLRGFQVWCEFKHWGDVGEADVSRYKEHLKNKPT 89

Query: 132 SA----------IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
            A           Q + +++  FKW   + Y+  NP L+VE+        +      ++Q
Sbjct: 90  KAGKIGLSPASVNQAIATLQSFFKWLATKRYITYNPTLNVEKVPAAPTETKDIEVAAVRQ 149

Query: 182 FKS-------FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234
                          ++    FE  L  GLR ++  +  +         +   K  +  T
Sbjct: 150 LAEGLEYRGQREQLSTRDTAIFEL-LKHGLRATEVSKLNIGDYNGQAVQVSKAKWRSDGT 208

Query: 235 VELPDGFMKLLA----------MTPIGKETFF----INNDKQKMNATQFSIWFKAKATKA 280
           V L     + L                 E  F     N   +++         K     A
Sbjct: 209 VPLAPNARQALDSYLGWCVRKGFDTSSGEPLFRSLSRNGYGKRLGYWGIYEMVKDLGVIA 268

Query: 281 --GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
               N   H +R    T       +   +      K+   +E YTK A   +
Sbjct: 269 ESTENVHPHRLRHTFGTQLVLNDMSPDYVRKLMRIKSPVTSERYTKRALEKK 320


>gi|320540499|ref|ZP_08040149.1| putative phage integrase [Serratia symbiotica str. Tucson]
 gi|320029430|gb|EFW11459.1| putative phage integrase [Serratia symbiotica str. Tucson]
          Length = 372

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 46/218 (21%), Positives = 83/218 (38%), Gaps = 23/218 (10%)

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             T + A+  L  ++ LF+ A  +E+  I+  LS++ P+ K + IR     + ++     
Sbjct: 126 SSTATKAVY-LAFIKALFRVA-EREWKWIDKALSLKVPQPKNKRIRWLEPHEAKRLVDEC 183

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGFM 242
            E  +  + F     +GLR S+      Q           + +  K+G  I V L D   
Sbjct: 184 PEPLKSTVQFALA--TGLRRSNIINLEWQQTDMQRRVAWINPEDSKSGRAIGVALNDTAC 241

Query: 243 KLLAMTPIGKETFFINNDK-------------QKMNATQFSIWFKAKATKAGV-NKSAHG 288
           K+L         +   + K             +KM     + W K    +AG+ N   H 
Sbjct: 242 KVLRNQIGHHHRWVFVHTKASNRSDGTITPSVRKMRVDSNTAW-KMALKRAGIENFRFHD 300

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           +R   A+    +G +   L    GW++++    Y   A
Sbjct: 301 LRHTWASWLVQSGVSLSVLQEVGGWESIEMVRRYAHLA 338


>gi|304384465|ref|ZP_07366866.1| integrase [Prevotella marshii DSM 16973]
 gi|304334444|gb|EFM00736.1| integrase [Prevotella marshii DSM 16973]
          Length = 409

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 40/253 (15%), Positives = 83/253 (32%), Gaps = 22/253 (8%)

Query: 89  VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG----VESRKHTPSSAIQFLTSMRVLF 144
            ++R   + +  +      D  + ++T   I       +    H  S+  +    ++ + 
Sbjct: 138 HSTRKRLQEFIQK-KYHVSDLAFSQLTESFIYELQTFCLGELGHQQSTFFRVAADLKTVC 196

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-----SEGSQPRLAFEFL 199
           + A R+          V   +   +  +   +E + + K+        E    R  F F 
Sbjct: 197 RLAYREGLADTLLFDKVHIERGDKKAPKALDQEALNKLKAICFDELEEEMETARDVFLFA 256

Query: 200 LYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254
            Y+G    D      +HL  +           QKTG +  ++L    ++L+      +  
Sbjct: 257 CYTGAAYCDLMELSKKHLVRDDAGSLWLKFSRQKTGVLCRIKLLPETVRLIEKMYSDERE 316

Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS-ADAGATAHELMATY 311
             +      +    +    KA   +AG+    ++H  R   AT+   + G     +    
Sbjct: 317 ALL----PFIKYPTYQSCLKALRLRAGISFPFTSHTARHTFATLITLEQGVPIETVSKML 372

Query: 312 GWKTVDQAETYTK 324
           G   V   E Y K
Sbjct: 373 GHTNVSMTERYAK 385


>gi|257458544|ref|ZP_05623679.1| integron integrase [Treponema vincentii ATCC 35580]
 gi|257443978|gb|EEV19086.1| integron integrase [Treponema vincentii ATCC 35580]
          Length = 426

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 50/304 (16%), Positives = 93/304 (30%), Gaps = 57/304 (18%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT----PSSAIQFLTSM 140
              +  ++ ++  +  + IR+  D + +  +   I   V           SS  Q L ++
Sbjct: 122 KHYSKRTQEAYSYWISRFIREHKDKNLKAFSDAEINPFVSRLATKEKVAASSQNQALAAL 181

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200
             L+K          +P  ++ R K+  +     ++E+  +  S   E     L    L 
Sbjct: 182 LFLYK--NILGLTIQSP-ENIIRAKKSKKLPAVLSREETAKIFSLLPENDYG-LFIRLLY 237

Query: 201 YSGLRCSDSCRAGVQHLQ--NNIFSIKTQKT----GTIITVELPDGFMKLLAMTPIGKET 254
            +G+R  +S R  VQ +    N  ++   K      T++ V L     K L       E 
Sbjct: 238 GTGMRLMESLRLRVQDIDFDKNEITVHCGKGAKDRKTMLPVSLKFPLQKHLENVRRIHEA 297

Query: 255 ---------FFINNDKQKM---NATQFSIWF----------------------------- 273
                       +   +K      T    W                              
Sbjct: 298 DCKDGFGLVPLPSALAKKYPNAGKTWAWQWVFPQARRWQNKETGEQGRHHIDPSVIQRTL 357

Query: 274 KAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
                ++G+ K    H  R   AT   ++G     +    G   V     YT   +R  L
Sbjct: 358 HEAVLRSGIPKPIGCHTFRHSFATHLLESGYDIRTIQELLGHSDVSTTMVYTHVLNRGGL 417

Query: 332 GIKN 335
           G+++
Sbjct: 418 GVQS 421


>gi|152984624|ref|YP_001346111.1| integrase [Pseudomonas aeruginosa PA7]
 gi|150959782|gb|ABR81807.1| integrase [Pseudomonas aeruginosa PA7]
          Length = 394

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 42/322 (13%), Positives = 87/322 (27%), Gaps = 46/322 (14%)

Query: 30  GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAV 89
           G RIR     ++  +  + + + G   + E+   P +    L  L+  +  S H  +L  
Sbjct: 22  GPRIRKKLRTKNEAL-NFQNRIMGDGARGEFEKRPARDERRLSELVRLWF-SLHGQNLK- 78

Query: 90  NSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT-------------------- 129
            +        + +  + GD    +            R                       
Sbjct: 79  -TGAERLRLLEAMAERMGDPKAYRFDAAMFAQYRAERAEGQHVRSSVGRGRRKGAAGKGV 137

Query: 130 -PSSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186
             ++    L  +  +F    R   +   NP  SV   K     +     + +        
Sbjct: 138 GANTLNHELAYLSAVFSELSRLGEWRGDNPLASVRPLKFDDAEMVCLELDQVDALLDELN 197

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
           +  S   L  E  L +G R  ++    V+ +   +      K+    +V +     + L 
Sbjct: 198 TRDSAAGLIAEVCLSTGARWGEAESLQVRQVHGGMVHYSRTKSSKNRSVPISKDLERRLL 257

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS----AHGVRKFSATISADAGA 302
                +  +                 F+      G++       H +R   A+     G 
Sbjct: 258 AALPFRSGY---------------NTFRRAVEAVGLDLPEGQLTHVLRHTFASHYMRNGG 302

Query: 303 TAHELMATYGWKTVDQAETYTK 324
               L    G  ++     Y  
Sbjct: 303 DIITLQRVLGHASLQMTMRYAH 324


>gi|2618948|gb|AAC48880.1| integrase [Phage 21]
          Length = 356

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 51/302 (16%), Positives = 96/302 (31%), Gaps = 39/302 (12%)

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKSAH----WGSLAVNSRISFESYFDQIIRKSGDF 109
           S  +R      R+   T+   + +Y            L  NS               G  
Sbjct: 45  SVNERLERMKGRRSDITVTEWLDKYISIQEDRLQHNELRPNSYRQKGKPIRLFREHCGMQ 104

Query: 110 DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL----FKWAVRQEYVA--INPCLSVER 163
             + IT   I   +++ K       +    +R++    FK A    +V    NP  + ++
Sbjct: 105 HLKDITALDIAEIIDAVKAEGH--NRMAQVVRMVLIDVFKEAQHAGHVPPGFNPAQATKQ 162

Query: 164 PKRKTEGIRPWTKEDMQQ-FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222
           P+ +    R  +  + Q  F+S        +      L +G R  D C      + +++ 
Sbjct: 163 PRNRVNRQR-LSLPEWQAIFESVSRRQPYLKCGMLLALVTGQRLGDICNFKFSDIWDDML 221

Query: 223 SIKTQKTGTIITVELP---DGFMKLLAMTPIGKETFFIN-------------NDKQKMNA 266
            I  +KTG+ + + L    D     L           ++             N   +++A
Sbjct: 222 HITQEKTGSKLAIPLNLKCDALNITLREVISQCRDAVVSKYLVHYRHTTSQANRGDQVSA 281

Query: 267 TQFSIWFKAKATKAGVNK------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
              +  FK    K G+        + H  R  S  +  + G    +L    G K+    +
Sbjct: 282 NTLTTAFKKAREKCGIKWEQGTAPTFHEQRSLSERLYREQGLDTQKL---LGHKSRKMTD 338

Query: 321 TY 322
            Y
Sbjct: 339 RY 340


>gi|255008617|ref|ZP_05280743.1| integrase [Bacteroides fragilis 3_1_12]
 gi|313146348|ref|ZP_07808541.1| integrase [Bacteroides fragilis 3_1_12]
 gi|313135115|gb|EFR52475.1| integrase [Bacteroides fragilis 3_1_12]
          Length = 414

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 56/318 (17%), Positives = 105/318 (33%), Gaps = 45/318 (14%)

Query: 68  PTTL----KWLISEYRKSAHWGSLAVNSRIS--FESYFDQIIRKSG--DFDYRKITTKHI 119
           PTTL    +W     +K +       + R S  ++ Y    +   G  D    ++T    
Sbjct: 101 PTTLLQMGEWERERLKKHSEEIDSTSSYRASMYYQKYLTDFLTSIGKKDIPLEEVTEDFG 160

Query: 120 RSGVESRKH----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
           +S     K       S     L  +  L   AV +E + +NPC  +E   +     R  +
Sbjct: 161 KSYKAHLKKCKNFGVSQTNHCLRWLNRLLYLAVDKEIIRVNPCEDLEYETKPEARHRYIS 220

Query: 176 KEDMQQFKS---FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-----FSIKTQ 227
           +E+ ++  S   +       R AF F   +GL  +D       H+  N        I  +
Sbjct: 221 REEFKKILSTPMYDKRMELARRAFIFSTLTGLAYADIQLLHPHHIGTNAEGRRYIRINRK 280

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA--TQFSIWFKAKATKAGVNK- 284
           KT     + L     ++L         +   +D++ +     + ++WF+       + K 
Sbjct: 281 KTKVEAFIPLHPIAERIL-------SLYNTTDDEKPVFPLPNRDALWFEVHELGVTIGKE 333

Query: 285 ---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD-----------RIR 330
              + H  R    T    A      +    G   +   + Y +  D             R
Sbjct: 334 ENLTYHQSRHSFGTFLISADIPIESIAKMMGHSNIRTTQGYARITDDKISKDMDKLMERR 393

Query: 331 LGIKNSRRISSVVDSDDP 348
             +    + +S +D+  P
Sbjct: 394 KEVSAGEKTNS-IDNQYP 410


>gi|154502506|ref|ZP_02039566.1| hypothetical protein RUMGNA_00319 [Ruminococcus gnavus ATCC 29149]
 gi|153796902|gb|EDN79322.1| hypothetical protein RUMGNA_00319 [Ruminococcus gnavus ATCC 29149]
          Length = 345

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 42/296 (14%), Positives = 99/296 (33%), Gaps = 45/296 (15%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR-------------KSGDFDYRKITTK 117
           L++ ++ Y        L+ N+  S+++ F  +I+               G  D   ++  
Sbjct: 14  LEYYVNTYM--PEARGLSKNTINSYKTTFTLLIKYMYSVKNMKADEITFGCLDVNTLSD- 70

Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEY----VAINPCLSVERPKRKTEGIRP 173
            +      RK + ++  Q L ++    ++A   ++       +  L +   K   +    
Sbjct: 71  FMSWLEHERKCSVTTRNQRLAALYSFSEYAQNYDFDAASTFRSAVLRIPSKKAPKKRRVG 130

Query: 174 WTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----NNIFSIK 225
           +T ++++   +  +     G +  +   F+  +G R  + C   V+ +          I 
Sbjct: 131 FTTDEVKILLALPNPKSETGLRDMVLLSFMYATGTRAQEVCDLTVKSVNFRSTGTTIDI- 189

Query: 226 TQKTGTIITVELPD-------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKAT 278
             K      + +PD        ++K   +        F +   + M  +     +K    
Sbjct: 190 VGKGSKARRIRIPDTCASMLKKYIKHRRIETEPDRHIFSSQTHEHMTISCVEEIYKKYIK 249

Query: 279 KAGV---------NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
            A           + S H +R  +     +AG     + A  G  +V   + YT+ 
Sbjct: 250 LAKEKTPNLFKEEHYSPHSMRHTTGQHMLEAGVPIMVIKAFLGHASVQTTQIYTES 305


>gi|281358281|ref|ZP_06244764.1| integrase family protein [Victivallis vadensis ATCC BAA-548]
 gi|281315371|gb|EFA99401.1| integrase family protein [Victivallis vadensis ATCC BAA-548]
          Length = 330

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 39/258 (15%), Positives = 80/258 (31%), Gaps = 11/258 (4%)

Query: 91  SRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQ 150
            + +   +F  I ++    D   +    +    + R  +  +       +   F W   +
Sbjct: 76  YQETIGRFFAWIKKEITLIDTDDLRLY-LAEYQQERNVSKVTIDNIRRILSSFFAWLEDE 134

Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210
           +Y+  +P   + R K        +T E ++  +   SE  +     E L  SG+R  +  
Sbjct: 135 DYIVKSPVRRIHRIKTAKIIKEAFTDETIEVLRDTCSE-VRNLAMVELLASSGMRVGELV 193

Query: 211 RAGVQHLQ-NNIFSIKTQKTGTIITVELPDG----FMKLLAMTPIGKETFFINNDKQKMN 265
           +     +  N    I   K  +   V           + L          F++       
Sbjct: 194 KLNRTDINFNERSCIVFGKGSSEREVYFDARTKIHLWQYLNSRTDDNPALFVSLRSPHKR 253

Query: 266 AT--QFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
                     +     A + N   H  R+  AT + D G    ++    G K +D    Y
Sbjct: 254 LEIGGVEFLLRKLGRIAAIENVHPHRFRRTLATRAIDKGMPIEQVQRLLGHKKIDTTMCY 313

Query: 323 TKGADRIRLGIKNSRRIS 340
               ++  + I + R + 
Sbjct: 314 A-LVNQSNVKIAHRRYVG 330


>gi|30248467|ref|NP_840537.1| Phage integrase [Nitrosomonas europaea ATCC 19718]
 gi|30138353|emb|CAD84361.1| Phage integrase [Nitrosomonas europaea ATCC 19718]
          Length = 292

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 43/284 (15%), Positives = 86/284 (30%), Gaps = 58/284 (20%)

Query: 98  YFDQIIRKSGDFDYRKITTKHIRSGVESR----KHTPSSAIQFLTSMRVLFKWAVRQEYV 153
           +  + I   G    +++ +  I + +       K + S+  Q L+++  L+K  +  +  
Sbjct: 3   WIKRFILFHGKRHPQEMGSAEIEAFLTHLAVAGKVSASTQNQALSALLFLYKEILSIDLP 62

Query: 154 AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG 213
            +N    + R K+        T+ ++Q      S G+   L    L  +G+R  +  R  
Sbjct: 63  WLN---EIVRAKQPQRLPTVLTRTEVQAILVRMS-GTYG-LMANLLYGTGMRLMECVRLR 117

Query: 214 VQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI-------------- 257
           V+ +        I+  K        LP+     L    + + T F               
Sbjct: 118 VKDVDFERGEILIRDGKGSKDRVTMLPESLAGPLQAHLLHRRTLFDDDSRLGKASVYLPD 177

Query: 258 -------------------------------NNDKQKMNATQFSIWFKAKATKAGVNK-- 284
                                             +  ++        K     +G+ K  
Sbjct: 178 ALERKYPNAATDWVWQYIFSSGSFSIDPRSGTERRHHIDEKLLQRAMKKAVQASGITKLA 237

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           + H +R   AT   D+G     +    G K V     YT   ++
Sbjct: 238 TPHTLRHSFATHLLDSGYDIRTIQELLGHKDVHTTMIYTHVLNK 281


>gi|325270579|ref|ZP_08137179.1| integrase [Prevotella multiformis DSM 16608]
 gi|324987155|gb|EGC19138.1| integrase [Prevotella multiformis DSM 16608]
          Length = 407

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 43/252 (17%), Positives = 87/252 (34%), Gaps = 19/252 (7%)

Query: 94  SFESYF-DQIIRKSGDFD--YRKITTKHIRSGVESRKHTPSSAIQF----LTSMRVLFKW 146
               +F + +I K G  D    + T   ++            A       L +++ +  +
Sbjct: 138 VLRRHFAEFLIYKYGKKDIGLAEFTPSVVQDFELYLSTAAGCAYNTSVKKLKALKTVTIY 197

Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ---PRLAFEFLLYSG 203
           A ++ Y+  +P L+  R   +       T E++ +  +      +    R  F F  ++G
Sbjct: 198 AQKRGYLLHDPFLN-HRFHLEPVNRGFLTDEEIMKIANKDLAIQRLELVRDVFIFSCFTG 256

Query: 204 LRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN 259
           L   D       ++           K QKT     V L D   +++  T  G +T+    
Sbjct: 257 LAYIDVSNLTPDNIVTLDDKQWIMTKRQKTSVETNVLLLDIPKRII--TKYGHKTYRDGK 314

Query: 260 DKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVD 317
               +   + + + K  A   G+ K  + H  R   AT+S   G     +    G   + 
Sbjct: 315 LLPVLTNQKINAYLKEIADLCGIKKRLTFHLARHTFATMSLSKGVPMESVSKMLGHTNIK 374

Query: 318 QAETYTKGADRI 329
             + Y +  ++ 
Sbjct: 375 TTQIYARITNKK 386


>gi|324323830|gb|ADY24874.1| integrase-recombinase protein [Bacillus thuringiensis serovar
           finitimus YBT-020]
 gi|324323973|gb|ADY25016.1| integrase-recombinase protein [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 280

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 29/256 (11%), Positives = 79/256 (30%), Gaps = 27/256 (10%)

Query: 85  GSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRV 142
                 +   ++ +           +   + +T   I+  +       + A         
Sbjct: 18  QGKREITVEDYKRHIQNFHSWLVHENSSLQDLTRYDIQQYIYFLSGCGNQATTITPKFSA 77

Query: 143 LFKWA--VRQEYVAINPCLSVERPKRKTEGI---RPWTKEDMQQFKSF--WSEGSQPRLA 195
           +  +   + +E +  +    ++RP+ +       +  ++    Q       SE  +    
Sbjct: 78  IVSYVHFIDREDLLHD----IKRPEVRHIRHISPKSLSRNQRNQLLRKVEQSENLRNIAI 133

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQN----NIFSIKTQKTGTIITVELPDG----FMKLLAM 247
               LY+G+R  +      + ++        +++  K G    + LP        + L  
Sbjct: 134 IYLTLYTGVRIFELVALNREDIEMRERSGFLTVQDGKGGISRKIPLPVESRYHLQRYLQS 193

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHEL 307
               +   F++N  ++++       F+      G++  AH +R         +G     +
Sbjct: 194 RTDSQSALFLSNYGKRLSKRSAQRVFENY----GIH--AHMLRHTYGRELVASGIDIATV 247

Query: 308 MATYGWKTVDQAETYT 323
               G   V+  + Y 
Sbjct: 248 AELMGHNDVNTTKRYA 263


>gi|322836737|ref|YP_004210651.1| integrase [Acidobacterium sp. MP5ACTX9]
 gi|321165824|gb|ADW71524.1| integrase family protein [Acidobacterium sp. MP5ACTX9]
          Length = 327

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 44/273 (16%), Positives = 86/273 (31%), Gaps = 30/273 (10%)

Query: 89  VNSRISFE---SYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS--SAIQFLTSMRVL 143
            +SR +             + G  D  ++   H+ + VE++  T S  +A   L ++R+L
Sbjct: 47  PSSRRAHREAVRQVSDFCAEHGIGDLAQVEPVHVAAFVETQLKTQSKPTAKLRLAALRML 106

Query: 144 FKWAVRQEYVAINPCLSVERPKR-KTEGIRPWTKED-----MQQFKSFWSEGSQPRLAFE 197
           F W V  + +  NP  SV  PK  +  G  P  + D     +    +    G + R    
Sbjct: 107 FDWMVVGQVIPTNPAHSVRGPKHSQRRGKTPVLQADEARTLIDAIDTTSLPGLRDRALIG 166

Query: 198 FLLYSGLRCSDSCRAGVQH--LQNNIFSIKT-QKTGTIITVELPDGFMKLLA-------- 246
            ++Y+      +    V+   +Q     ++  +K G    +       + L         
Sbjct: 167 LMVYTFSCVGAAISMRVEDFFVQGRRGWVRLHEKGGKEHEMPTHHNLDRYLEEYIDAAGI 226

Query: 247 MTPIGKETFFINND------KQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISA 298
                   F   +          +  +      + +A  AG+      H  R    T   
Sbjct: 227 AEDRKGPMFRTTSGRSGELTGNSLLQSDVWRMIRRRALAAGIKTEIGCHTFRATGITAYL 286

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
             G            ++      Y + +D + L
Sbjct: 287 KNGGRLEIAQQMAAHESARTTGLYDRRSDEVSL 319


>gi|282856363|ref|ZP_06265642.1| tyrosine recombinase XerD [Pyramidobacter piscolens W5455]
 gi|282585734|gb|EFB91023.1| tyrosine recombinase XerD [Pyramidobacter piscolens W5455]
          Length = 297

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 38/263 (14%), Positives = 84/263 (31%), Gaps = 30/263 (11%)

Query: 88  AVNSRISFESYFDQI---IRKSG--DFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRV 142
           + N+  ++    +        +G    D  +         ++ +    SS    +  +R 
Sbjct: 23  SKNTAETYRRGLELWRGYCEAAGLDPLDVAQEALSTFIHALKGQGRAGSSIQLIVAGLRS 82

Query: 143 LFKWAVRQEYVAIN---PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG----SQPRLA 195
             K+ V    + +N   P L    P +  +  +  T+ ++Q+  +          + R A
Sbjct: 83  WVKFRVLNGDLPMNTWIPVL----PAKAKKLPKILTEGEIQRILNACDGPGYYDCRDRTA 138

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE- 253
            E L   G+R S+ C   V  L  ++   I   K      +   +   +   +    +  
Sbjct: 139 LETLANCGVRASELCGLKVGSLNLDDKNLIVFGKGSKERQIPFAEDLKRQFQIYLQKRLE 198

Query: 254 ---------TFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAG 301
                      F+++ ++ ++        + +   A V +     H +R   AT     G
Sbjct: 199 FLDGDETEKMLFLSSRREPLSRVDLWRIVQKRGKMASVPEERLFPHVLRHSIATHLLRRG 258

Query: 302 ATAHELMATYGWKTVDQAETYTK 324
                L    G  ++   E Y  
Sbjct: 259 MDLRTLQEFLGHSSIATTEKYLH 281


>gi|261226520|ref|ZP_05940801.1| integrase for prophage CP-933O [Escherichia coli O157:H7 str.
           FRIK2000]
          Length = 359

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 56/360 (15%), Positives = 107/360 (29%), Gaps = 62/360 (17%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKR-------- 58
           L P+  K   R+ K+ + +R     +       +        +       ++        
Sbjct: 14  LSPYFDK---RNNKVYWRYRHPITGKNHGLGSIDQKLAETIAAEANSRLARQQMEQMLSL 70

Query: 59  -EYINSPRKKPTTLKWLISEYRKS----AHWGSLAVNSRISFESYFDQIIRKSGDFDYRK 113
            E I S     +T+   ++ YRK        G + +N+     +       + G      
Sbjct: 71  QEKIISDTGGSSTVTIFLNNYRKIQQERYENGEIKLNTLKQKAAPLRVFDERFGTRPLDA 130

Query: 114 ITTKHIRSGVESRKHTPSSAIQ--FLTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTE 169
           IT K + S +E  K    + +   F   +  +F+ A +   V    NP  S ++P+    
Sbjct: 131 ITVKDVVSVLEEYKARGHNRMGQIFRKVLIDVFREAQQTGDVPPGFNPAESAKKPQV-RI 189

Query: 170 GIRPWTKEDMQQ-FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
             +  T ++    + +   +G   +      L +G R SD C+     +++    ++ QK
Sbjct: 190 SRQRLTFDEWMMIYNAAEKDGYFLQRGMLLALMTGQRLSDICKMQFSDIRDGYLHVEQQK 249

Query: 229 TGTIITVE-----------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265
           TGT I +                        L    +         K           + 
Sbjct: 250 TGTRIAIPLALRCDKLNLTLDDVVSSCRDCVLSPWLLHHHHAKGTAK-------RGGMVK 302

Query: 266 ATQFSIWFKAKA-------TKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
               ++ FK             G   S H  R  S  +  + G     L    G      
Sbjct: 303 PATLTVAFKKARDSVDYNWRANGTPPSFHEQRSLSERLFREQGVDTKIL---LGHSNQKM 359


>gi|257426155|ref|ZP_05602571.1| phage integrase [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257437048|ref|ZP_05613089.1| phage integrase [Staphylococcus aureus subsp. aureus M876]
 gi|257271063|gb|EEV03232.1| phage integrase [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257283642|gb|EEV13768.1| phage integrase [Staphylococcus aureus subsp. aureus M876]
          Length = 349

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 52/333 (15%), Positives = 114/333 (34%), Gaps = 28/333 (8%)

Query: 13  KERTR--HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT- 69
           + +TR   GK   Y  K  G+R R               A +    K   + S       
Sbjct: 8   RMKTRCYDGKKWQYEFKHEGKRYRKKGFRTK------REANSAGLDKLNELRSGFNIDNY 61

Query: 70  -TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRSGVE--S 125
            TL+     + K+     +  N+   + +    I + K G  +  KI  +  +  +   S
Sbjct: 62  ITLEEYFENWIKTYKQPVVKENTYRHYRNALQHIQKHKIGKMELSKINRQVYQKFINDYS 121

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV-----ERPKRKTEGIRPWTKEDMQ 180
           ++H   +  +   ++R     A+    +  NP   V     +  K + E     T+ ++ 
Sbjct: 122 KEHAKETIRKTNGAIRSALDDALYDGLIFKNPAYKVNYKAGKPTKSEQEKFISVTEYEIL 181

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTG-TIITVEL 237
           +      + ++  LA   ++ +G R S +    ++H+    N   I  +KT  +   + +
Sbjct: 182 K-DHVRKKRTRSSLALFIMICTGCRVSGARNIKIEHINQVKNTIFIDERKTNTSPRYISI 240

Query: 238 PDG----FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKF 292
                   M +++   I  + +        +N    +   K+      +   ++H +R  
Sbjct: 241 AKSDMKHIMDVISTFAISYDGYIFKEAGSIINLHAINNALKSACRVNNIPIITSHALRHT 300

Query: 293 SATISADAGATAHELMATYGWKTVD-QAETYTK 324
             +     G + H +    G K +      Y+ 
Sbjct: 301 HCSYLLAKGVSIHYISKRLGHKNIAITTSVYSH 333


>gi|150008234|ref|YP_001302977.1| integrase [Parabacteroides distasonis ATCC 8503]
 gi|255015378|ref|ZP_05287504.1| integrase [Bacteroides sp. 2_1_7]
 gi|256839485|ref|ZP_05544994.1| integrase [Parabacteroides sp. D13]
 gi|298375193|ref|ZP_06985150.1| tyrosine site-specific recombinase [Bacteroides sp. 3_1_19]
 gi|301309266|ref|ZP_07215210.1| tyrosine site-specific recombinase [Bacteroides sp. 20_3]
 gi|149936658|gb|ABR43355.1| integrase [Parabacteroides distasonis ATCC 8503]
 gi|256738415|gb|EEU51740.1| integrase [Parabacteroides sp. D13]
 gi|298267693|gb|EFI09349.1| tyrosine site-specific recombinase [Bacteroides sp. 3_1_19]
 gi|300832948|gb|EFK63574.1| tyrosine site-specific recombinase [Bacteroides sp. 20_3]
          Length = 310

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 39/277 (14%), Positives = 94/277 (33%), Gaps = 36/277 (12%)

Query: 90  NSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLF 144
           ++  S++   +  +R  G          K   +  ++ + ++  T ++   ++  +R ++
Sbjct: 24  STAKSYQDALNSFMRFCGLEVIPYIYVNKENLRRYQAFLLNKGCTWNTVSTYMRRIRCVY 83

Query: 145 KWAVRQEYVAINP------CLSVERPKRKT---EGIRPWTKEDMQQFKSFWSEGSQPRLA 195
             AV +      P         +E  ++K    + +R      +        E  + R A
Sbjct: 84  NMAVEEGLAPYIPYLFKGVFTGIESKRKKALPQDLLRSLMTASLD-----DPELRKTRQA 138

Query: 196 FEFLL-YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP----DGFMKLLAMTPI 250
              +  + G+   D      ++++  +   K QKTGT + +E+     +   +L +    
Sbjct: 139 LCLMFQFCGMAFVDFAHLKKENVRGGVLEYKRQKTGTPMLIEVQSTAWESLRELSSDVGK 198

Query: 251 GKETFFINNDKQKMNATQ----------FSIWFKAKATKAG--VNKSAHGVRKFSATISA 298
                F      K+              F+   K  A   G  +  +++ +R   A I  
Sbjct: 199 DSPYLFPFLKGIKVGKEAYKEYTSALAHFNRNLKRLARACGVSIPITSYSIRHSFAMILK 258

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335
           +       +    G K++   + Y K     ++   N
Sbjct: 259 EQDVPIEMISELLGHKSIKTTQIYLKSFSLEKMSAVN 295


>gi|296107529|ref|YP_003619230.1| hypothetical protein lpa_02800 [Legionella pneumophila 2300/99
           Alcoy]
 gi|295649431|gb|ADG25278.1| hypothetical protein lpa_02800 [Legionella pneumophila 2300/99
           Alcoy]
          Length = 410

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 70/354 (19%), Positives = 121/354 (34%), Gaps = 46/354 (12%)

Query: 10  FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSA--LTGSTPKREYINSPRK- 66
           FV + R  H            +RI L    + T   A   A  L G   K +   + +K 
Sbjct: 48  FVVETRVAH----------KVKRITLGKYGQITAEEARKQAKHLLGQIAKGDNPIAEKKI 97

Query: 67  ---KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
              K  TLK    +Y K      L   +   ++S   Q+I    D     IT + I    
Sbjct: 98  NKIKSITLKEAFHDYLK--ARKDLKPLTIKDYQSILKQVISDWFDKPLMNITREMIAKRH 155

Query: 124 ESRKHT--PSSAIQFLTSMRVLFKWA-----VRQE--YVAINPCL---------SVERPK 165
                T   + A   +  +R +F +A     +      +AINP            V+R  
Sbjct: 156 AQYGQTNSKARANYAMRVLRAVFNFAAHEYQLEDGQPIIAINPVEYLSHTRSWYRVDRKN 215

Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRLA---FEFLLYSGLRCSDSCRAGVQHLQ--NN 220
              +  +               + SQ  +    F  +L++GLR +++     + +   + 
Sbjct: 216 TMIKSHQLAAWHQGLTRLGEQEDYSQAMMWKDYFLLVLFTGLRRTEAASLCWKDVDFKDK 275

Query: 221 IFSIKTQKTGTIITVELPDGFMKLLAMTPIGK--ETFFINNDKQKMNATQFSIWFKAKAT 278
            F+++  K   + T+ + D   +L       K  E  F +  K            K  A 
Sbjct: 276 TFTVQDTKNREVHTLPMSDFLYELFLRRKQFKMNEFVFPSPSKTGHVIDPRKAMLKV-AE 334

Query: 279 KAGVNKSAHGVRKFSATISADAGATAHELMATYGWK--TVDQAETYTKGADRIR 330
            +GV+ + H +R+  AT +      A+ L      K  T   A    +  +R+R
Sbjct: 335 LSGVSFTVHDLRRTFATTAESLDLPAYALKRLLNHKMNTDVTAGYIVRDVERLR 388


>gi|167765392|ref|ZP_02437505.1| hypothetical protein BACSTE_03780 [Bacteroides stercoris ATCC
           43183]
 gi|167697020|gb|EDS13599.1| hypothetical protein BACSTE_03780 [Bacteroides stercoris ATCC
           43183]
          Length = 411

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 44/270 (16%), Positives = 93/270 (34%), Gaps = 33/270 (12%)

Query: 85  GSLAVNSRISFESYFDQIIRKS-------GDFDYRKITTKHIRS----GVESRKHTPSSA 133
              A ++   +E   ++ +++         D    ++    I +        RK  P + 
Sbjct: 132 TDRAQSTYKQYE-VLNKQLKQFLREEYHVEDIPLTELDLPFIEALNFFFRVKRKMKPRTV 190

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-WSEGSQ- 191
              +  +  L + A+ +  +  +P    E  K + +  +  T +++          G+Q 
Sbjct: 191 KARIVLLNKLIRLALHRRIITRSPFDGFELEKTELK-NKSLTNDELDLLMKTPLKSGTQR 249

Query: 192 -PRLAFEFLLYSGLRCSDSCRAGVQHL---QNN--IFSIKTQKTGTIITVEL---PDGFM 242
             R  F F  ++GL  +D  +   + +    +     S   QK+ T+  V+L   P   M
Sbjct: 250 FIRDMFLFSTFTGLAYADLHKLSWKDIITEDDGSLWISANRQKSQTVFNVKLLNIPIQIM 309

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS-AD 299
           +         + F        M+  Q ++  K  A   G+N+  S H  R   A+     
Sbjct: 310 EYYKGLAPDGKVF------PSMSLGQVNVGLKRIARNCGINRVLSYHVARYTFASQICLS 363

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRI 329
            G     +    G K +   + Y +  +  
Sbjct: 364 QGVPIESVSRMLGHKHIQTTQRYARLNNEK 393


>gi|217972984|ref|YP_002357735.1| integrase family protein [Shewanella baltica OS223]
 gi|217498119|gb|ACK46312.1| integrase family protein [Shewanella baltica OS223]
          Length = 278

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 46/262 (17%), Positives = 90/262 (34%), Gaps = 17/262 (6%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--K 127
           ++   I  Y + A     A  +   +   + ++  + G +    +T + IRS ++ R  K
Sbjct: 16  SISQAIDYYIRHAAQYQKAFVNSEQYR--YKRLKTELGSYRLIDLTPELIRSFIDKRLTK 73

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKT-EGIRPWTKEDMQQFKSF 185
             PSSA + + +++  + W  R       +    V  P   T     P T   ++Q    
Sbjct: 74  VKPSSAKRDVCALQRCWNWYRRDLGMRLDDHFKHVRLPVDNTVREFIP-TDFQLKQIIDL 132

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMK 243
                +P    E L  +  R S+  +  VQ +  +     ++  K G    V L      
Sbjct: 133 LPLHVKP--IIELLAETACRRSEILKLTVQDVNLHQRTIYLRNTKNGLDRVVPLSKKACV 190

Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGA 302
           +L       +    + +   +        F+  A KAG      H +R +  +     G 
Sbjct: 191 ILNEAINRAKNKLFDIEADHVTRQ-----FRISADKAGCPLCVVHSLRHYKLSKLISQGI 245

Query: 303 TAHELMATYGWKTVDQAETYTK 324
               +    G + +   + Y K
Sbjct: 246 DHVIVAKISGHQDIRMLQRYVK 267


>gi|114778571|ref|ZP_01453398.1| integrative genetic element Gsu32, integrase [Mariprofundus
           ferrooxydans PV-1]
 gi|114551160|gb|EAU53720.1| integrative genetic element Gsu32, integrase [Mariprofundus
           ferrooxydans PV-1]
          Length = 391

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 49/266 (18%), Positives = 92/266 (34%), Gaps = 18/266 (6%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESR-- 126
           T+  LI  Y     +  +   S    E   ++ I+ +  +    +I    + + +++   
Sbjct: 99  TIPELIKLYIN--QYAKVRKTSWEEDERQLNKDILPRWKNRKAIEINKSDVHAVLDTLIE 156

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
           +  P  A + L  ++ +F +A  + YV  NPC  +  P  +T   R  T  +++ F    
Sbjct: 157 RGAPIGANRLLAVLKKVFNYAKEKGYVTNNPCDEITPPATETSRDRVLTANEIKTFWHQL 216

Query: 187 S---EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGF 241
                 S  + A +F L +  R  +   A    +  + + I   T K      V L    
Sbjct: 217 DCTNMHSSTKNALKFQLITLQRRKEVALARWNDIHGDTWVIPAGTAKNKKRHDVHLSQFA 276

Query: 242 MKLL-AMTPIGKETFFIN-----NDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSA 294
            KLL       K++ F+         + +     S   K       V + S H +R+ +A
Sbjct: 277 KKLLIEAKSYSKDSPFLFPSPCGAGSKHIRPDALSKAVKRNMETLMVQDFSPHDLRRTAA 336

Query: 295 TISADAG-ATAHELMATYGWKTVDQA 319
           T    +  A    L            
Sbjct: 337 TFLTKSKIANRLVLSLMLNHSQGKSV 362


>gi|86742264|ref|YP_482664.1| phage integrase [Frankia sp. CcI3]
 gi|86569126|gb|ABD12935.1| tyrosine recombinase XerC subunit [Frankia sp. CcI3]
          Length = 385

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 46/320 (14%), Positives = 93/320 (29%), Gaps = 48/320 (15%)

Query: 49  SALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD 108
            A      +    +        L+ LI+E  +S            +  ++ +++      
Sbjct: 53  DARPVEIVETPESDWDTAVAGFLRHLIAELARSPETVRAYAADLANLRAHAERMGCSV-L 111

Query: 109 FDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI------------- 155
            D      +   + + +    P+S  +  +  RV   +A R  ++               
Sbjct: 112 ADLDLALLRSWLASMRAAGAAPASLARRASMARVFSSYAARHGFLDTDVAARLVGNRTVR 171

Query: 156 ----------------NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199
                           NP   V  P        P +  D ++      E  +  L  E L
Sbjct: 172 RVPEVLTAAAARQLLENPSPDVSPPGTSQPSGLPDSTADSERVVRRAVE-LRDALVLELL 230

Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKETFFIN 258
             SG+R S+ C   + H+ ++   ++   K G   +V      +  L           + 
Sbjct: 231 YGSGIRVSELCGLDLGHIDDDRRLLRVLGKGGKERSVPFGVPAVAALRSWRSTGRPRLMT 290

Query: 259 NDKQ-------------KMNATQ-FSIWFKAKATKAGVNKSAHGVRKFSATISADAGATA 304
                                 +  +    A    AG+  + HG+R  +AT   + GA  
Sbjct: 291 ARSGRALLLGLRGGRLDPRTVRRILTTRVAAGVAPAGL--TPHGLRHSAATHMLEGGADL 348

Query: 305 HELMATYGWKTVDQAETYTK 324
             +    G  ++   + YT 
Sbjct: 349 RSVQEFLGHASLATTQIYTH 368


>gi|300872291|gb|ADK38973.1| IntI4 [Vibrio sp. V91(2010)]
          Length = 299

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 42/289 (14%), Positives = 86/289 (29%), Gaps = 57/289 (19%)

Query: 93  ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEY 152
            ++  +  + I          +  K +   +         A +  +       +  ++  
Sbjct: 7   RAYLHWITRYIHFHNKKHPSLMGDKEVEEFLTYLAVQGKVATKTQSLALNSLSFLYKE-- 64

Query: 153 VAINP-CLSVE--RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDS 209
           +   P  L +   R + + +     T++++++         + +L  + L  SGLR  + 
Sbjct: 65  ILKTPLSLEIRFQRSQLERKLPVVLTRDEIRRLLEIVDP--KHQLPIKLLYGSGLRLMEC 122

Query: 210 CRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLAMTPIGKETFFINN-------- 259
            R  VQ +  +  +I+    K G   TV L       L       + ++  +        
Sbjct: 123 MRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHLKEQIALAKRYYDRDLHQKNYGG 182

Query: 260 --------------------------------------DKQKMNATQFSIWFKAKATKAG 281
                                                  +  MN T      +  A +AG
Sbjct: 183 VWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVMRRHHMNETVLQKAVRRSAQEAG 242

Query: 282 VNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           + K+   H +R   AT   + GA    +    G   V   + YT   DR
Sbjct: 243 IEKTVTCHTLRHSFATHLLEVGADIRTVREQLGHTDVKTTQIYTHVLDR 291


>gi|295090287|emb|CBK76394.1| Site-specific recombinase XerD [Clostridium cf. saccharolyticum
           K10]
          Length = 289

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 40/274 (14%), Positives = 98/274 (35%), Gaps = 24/274 (8%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYR------KITTKHIRSGVESR 126
             +S + +     +LA N+   +++Y    +    + +        ++    +++   SR
Sbjct: 2   DYLSVFIEMLQAKNLAPNTIRGYQTYLKPYLSYLLERNISPEHASWEMVRDFLKTLQTSR 61

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             +  +    ++ ++  + + + Q +   +P     R  R      P  +  +  F +  
Sbjct: 62  HLSDRTMNMVISHLQFFWIYVLHQPW---DPSQIPFRKFRTYLPFVP-DRNQVALFLNSL 117

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKL 244
            +  + RLA   L  +GLR  + C    +++   ++   I   K  +   V +P+   + 
Sbjct: 118 DDP-KARLACSILYAAGLRLDELCHLECRYIFLSSHRLYIPVSKNRSDRYVPIPESICRD 176

Query: 245 LA------MTPIGKETFFIN---NDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFS 293
           +          +  +T+      N  + M+               G++    AH +R   
Sbjct: 177 IREYWYSCPAHMKPKTWLFTQQTNRSRPMDKQWLQRIILDHRNALGMDSRFCAHSLRHAY 236

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           AT S + G     L +  G ++++    Y   A 
Sbjct: 237 ATHSYENGLDLLSLKSRLGHRSLNSTAIYVHLAS 270


>gi|85706620|ref|ZP_01037713.1| probable integrase [Roseovarius sp. 217]
 gi|85669032|gb|EAQ23900.1| probable integrase [Roseovarius sp. 217]
          Length = 175

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 52/143 (36%), Gaps = 7/143 (4%)

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLLA-- 246
           + R A      +GLR S++    V  + ++     ++  K     TV L    + +L   
Sbjct: 11  KARAALTTAYAAGLRASEAVSLKVTDIDSDRMVLQVRHGKGAKDRTVMLSPQLLGILRTY 70

Query: 247 -MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGAT 303
                 K+  F     + ++        ++    AG+ K  S H +R  SAT   ++G  
Sbjct: 71  WRLARPKDWLFPGRGDKPIDVQVLHSTCRSATKAAGLTKKVSVHTLRHSSATHLLESGVD 130

Query: 304 AHELMATYGWKTVDQAETYTKGA 326
              +    G   +     YT+ A
Sbjct: 131 IRVIQVLLGHSNLSTTARYTQVA 153


>gi|260904973|ref|ZP_05913295.1| phage integrase family protein [Brevibacterium linens BL2]
          Length = 393

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 59/355 (16%), Positives = 109/355 (30%), Gaps = 51/355 (14%)

Query: 18  HGKII--YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75
           +GK+     +R   G   ++     S    A  +       +    +    + T L  L 
Sbjct: 14  NGKVRATCRYRGWDGVTRQVKATGTSQ-ENARRTLEADLRDRSSDFSDSITRETRLHELG 72

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKHT-PSSA 133
             +   A    LA  S   +E   ++ I+   G    R+ T   +   ++    T P+ A
Sbjct: 73  KAWLIDAKQTDLARQSLQEYEQVLNKTIVPGIGQLRVREATVGRLDKFLKDIAGTHPAKA 132

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS-----FWSE 188
            Q    +  +   AVR + +  NP      P RK    R  T+++ +  +         +
Sbjct: 133 KQTKVVLSHMLGLAVRLDAIPHNPVTETRLPARKQAEPRALTEDEQEALRRGIYKWMHQK 192

Query: 189 GS--QPRL-----AFEFLLYSGLRCSDSCRAGVQHLQNN-----------IFSIKTQ--- 227
           G+    R        + LL +G+R  + C      +              +  +  Q   
Sbjct: 193 GTSGPKRAPDLLDIVDMLLATGMRIGELCALRWDDVDLGSEHPSILISGTVIRVTGQGLT 252

Query: 228 -----KTGTI-ITVELPDGFMKLLAMTPIGKE---------TFFINNDKQKMNATQFSIW 272
                KT +  + V LP   + +L       +           F ++     +       
Sbjct: 253 RQAHTKTSSRHLRVYLPPKAVAILLNRSTDTDEDAPANLWNMVFPSSTGTLRDPYNLRRQ 312

Query: 273 FKAKATKAGVNK-SAHGVRKFSATIS-ADAGATAHELMATYGWKTVD-QAETYTK 324
           F+     AG +  + H  RK   T      G  A    A  G       +  Y +
Sbjct: 313 FRDARVAAGFDWVTPHTFRKTVTTNLQRVRGLEAASEQA--GHSDTAVTSRHYVQ 365


>gi|75909442|ref|YP_323738.1| phage integrase [Anabaena variabilis ATCC 29413]
 gi|75703167|gb|ABA22843.1| Phage integrase [Anabaena variabilis ATCC 29413]
          Length = 395

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 58/394 (14%), Positives = 124/394 (31%), Gaps = 74/394 (18%)

Query: 2   TPSLRLPPFVTKERTRHGKIIYYFRKGHGRR-IRLPYPHESTFIPAYMS--------ALT 52
           TP  ++P         +G++   FR G  R  + L  P       A  +          +
Sbjct: 5   TPKGKVPKGNVSIIDSNGRLQLRFRYGGKRYYLSLGLPDTKISRKAAEAKKNQIELDIAS 64

Query: 53  GSTPKREYINSPRKKPTT------------LKWLISEY--RKSAHWGSLAVNSRISFESY 98
           G+         P+   +T            +  L   Y   KS+        +   + + 
Sbjct: 65  GNFDPTLDKYKPQSVLSTVEPDITPKVTPKITELWEGYINYKSSSLKE----TTKGYHNS 120

Query: 99  FDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158
           F ++ ++ GD     +    +++ +E R  T     + L  +     WAV+ + +  NP 
Sbjct: 121 FTKLFQRLGDIPL--LDALKVKAELE-RITTVGQTKRALIQLNAACNWAVKHKLIDSNPY 177

Query: 159 LSV--ERPKRKTEG---IRPWTKEDMQQFKSFWSEG--------------SQPRLAFEFL 199
           + +  E PK + +       +++++ ++    + +               S      EFL
Sbjct: 178 VGMANEMPKYRYQLEPKPNAFSEQEREKIIKAFKDHRGNWNGRGYTGISYSHYASLVEFL 237

Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIK-----------------TQKTGTIITVELPDGFM 242
             +G R S++     +H+  +   I+                   K          +   
Sbjct: 238 FLTGCRPSEAIGLQWKHIAEDCGYIRFEESVTTSGNGIPTRVQGSKNNKKRQFPCSERLR 297

Query: 243 KLL----AMTPIGKETFFINNDKQKMNATQF-SIWFKAKATKAGVNKSAHGVRKFSATIS 297
            LL       P   +  F +   + +N   F +  +         N + +  R    TI 
Sbjct: 298 NLLISIKPENPYLDDLVFPSPKGKVINYNNFCNNAWNRIVDPIKPNTTPYSCRDTFITIQ 357

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
              G +   +       +V+  E     AD +++
Sbjct: 358 ILKGVSESVIGKWCD-TSVEMIEK--HYADYLKM 388


>gi|116619763|ref|YP_821919.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116222925|gb|ABJ81634.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 251

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 33/229 (14%), Positives = 85/229 (37%), Gaps = 23/229 (10%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG----VESRKHTPSSAIQFLTSM 140
            + +  +  ++     +           ++  +HIR      V+ RK  P + +  ++++
Sbjct: 15  RNYSQATARAYVGAIQRFAEHF-HRSPDQLGPEHIREYQLHLVQDRKLHPRTVMIQMSAL 73

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKR-KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199
           R  F+  +++ +   +    +  PK  + +     +++++ +  +  +   + R     L
Sbjct: 74  RFFFRKVLKRRFDRDD----LPLPKLLRRQIPTVLSRDEVARLIA-AAGNLRHRTILMAL 128

Query: 200 LYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMK----LLAMTPIGKE 253
             +G+R ++ C   ++ +        I+  K G    V LP   +          P    
Sbjct: 129 YATGMRRAELCHLRIEDIDKERMVLHIRQGKGGKDREVPLPPKLLAQLRIHYRALPHRSA 188

Query: 254 TFFINNDKQ----KMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATI 296
             F +   +     M         +  A +AG+ KS   H +R ++A+ 
Sbjct: 189 LVFPSLQSRRPDQPMTEKAVWHACRQAARRAGITKSVHPHTLRHYAASR 237


>gi|242243126|ref|ZP_04797571.1| bacteriophage integrase [Staphylococcus epidermidis W23144]
 gi|242233474|gb|EES35786.1| bacteriophage integrase [Staphylococcus epidermidis W23144]
          Length = 348

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 42/327 (12%), Positives = 116/327 (35%), Gaps = 27/327 (8%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS-PRKKPTTLK 72
           + T+ G    Y  +  G+R R      ++F     +    +    +           TL 
Sbjct: 2   KVTKRGNSWQYDFRFEGKRYRK-----TSFKTKRDATQAANKLLNDLTKGLITNNKITLT 56

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--TP 130
             ++++++      ++  +  ++  Y +++     D    KIT    +  + + K   + 
Sbjct: 57  KYLNDWKEIYIKEYVSSKTYKNYCRYCEKVEYYFKDKPLDKITRNEYQLFLTNFKDNLSQ 116

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE----RPKRKTEGIRPWTKEDMQQFKSFW 186
               +    +      A+    +  +   +V+    +P  K E  + +  +++++ K ++
Sbjct: 117 DQLSRLNKFITKAISTAIFDGLITKDFTFNVKVESSKPPIKQESDKFFNIDELKKIKDYY 176

Query: 187 SEGSQPRLA----FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---TIITVELPD 239
              ++   A       ++ +G R SD      + +      I    T        V +  
Sbjct: 177 LSKTKYYSASTHLILLMIETGGRFSDCINLTRKDINELNLEIFLNGTKNKSAPRYVSVSK 236

Query: 240 GFMKLL-----AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292
             +++L       T   +   FINN  +++  +  +   +   +K  +++  ++H  R  
Sbjct: 237 TLIQILLKYIENHTSSIEGYVFINN-GKQITNSSVNKSIREACSKLNIHRNLTSHAFRHT 295

Query: 293 SATISADAGATAHELMATYGWKTVDQA 319
            A++    G   + +    G  ++D  
Sbjct: 296 HASMLIHEGLNIYYISKRLGHSSIDVT 322


>gi|167621618|ref|YP_001672126.1| integrase family protein [Caulobacter sp. K31]
 gi|167645971|ref|YP_001683634.1| integrase family protein [Caulobacter sp. K31]
 gi|167646190|ref|YP_001683853.1| integrase family protein [Caulobacter sp. K31]
 gi|167348401|gb|ABZ71136.1| integrase family protein [Caulobacter sp. K31]
 gi|167348620|gb|ABZ71355.1| integrase family protein [Caulobacter sp. K31]
 gi|167351741|gb|ABZ74467.1| integrase family protein [Caulobacter sp. K31]
          Length = 330

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 36/291 (12%), Positives = 86/291 (29%), Gaps = 45/291 (15%)

Query: 88  AVNSRISFESYFDQIIRKSG--------DFDYRKITTKHIRSGVE----SRKHTPSSAIQ 135
           + ++   +   F  ++R +G              I    +   +     +R ++  S   
Sbjct: 25  SPHTVAGYRDTFRLLLRYAGARCGKPPVKLTVEDIDADLVADFLAHTETARGNSARSRNT 84

Query: 136 FLTSMRVLFKWAVRQEYVAINPC--------LSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            L ++R  F++         +P         L++   +     +     ++M    +   
Sbjct: 85  RLAAIRSFFRY-----VAMSDPTWLLQCQRILAMPNKRYVKRTVTFLDADEMAALLAAPD 139

Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTG-----TIITVEL 237
                G +        + +GLR S+     +  +   N   I+    G     T +  E 
Sbjct: 140 RTTWAGRRDHALLLLAIQTGLRASELVGLKLGDVVLGNGAHIRCMGKGRKERATPLRRET 199

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--------SAHGV 289
                  +          F +   ++++        +     A            + H +
Sbjct: 200 AKLLGAWIGNDKDENRPLFPSIRGERLSRDALEHLVRKHCLSASRTCPSIGTKRVTPHTL 259

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
           R  +A      G     +    G + V+  + Y   AD +R+  K   R++
Sbjct: 260 RHSTAMDLLHHGVDPAVIALWLGHENVETTQIYIH-AD-MRMKEKALARVA 308


>gi|76812135|ref|YP_333123.1| hypothetical protein BURPS1710b_1722 [Burkholderia pseudomallei
           1710b]
 gi|76581588|gb|ABA51063.1| probable site-specific [Burkholderia pseudomallei 1710b]
          Length = 339

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 43/320 (13%), Positives = 103/320 (32%), Gaps = 26/320 (8%)

Query: 25  FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHW 84
            RK         +  +S  + A+   +     +  + +    + TT+  L+  Y +    
Sbjct: 15  VRKKGYPATSKKFATKSEAL-AWGRMIESEMDRGLFASRDDAERTTIADLLDRYTRDISP 73

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--TPSSAIQFLTSMRV 142
              +  S +       ++ ++ G +    +T  H+ +  ++R    +P + +  L  +  
Sbjct: 74  TKRSGGSDMGRAG---KLKKQLGAYKLTALTAPHLVAYRDARLREVSPQTVVHELNLLNR 130

Query: 143 LFKWAVRQEYVAINPCL--SVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200
           +   A  +E+  + P     V +P++     R    +++Q            R      +
Sbjct: 131 VLTLA-TREWGVVVPSGVPKVVKPRKPQGRDRRLHPDEIQAIIDATESPDL-RDFIRLAV 188

Query: 201 YSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFIN 258
            +G+R  +      +++  +     +   KT T  TV L      +L        T    
Sbjct: 189 ATGMRRGELASLRWENIDLDQRTAHLPATKTDTPRTVPLSSVATAVLQARKDAGYTVPFA 248

Query: 259 NDKQKMNATQFSIWFKAKATKAG--------------VNKSAHGVRKFSATISADAGATA 304
                +         +A+                   +    H +R  + +   + G   
Sbjct: 249 VTANALTRAFCRAVQRARRLYESTCTFLERPVTSNWLIGIRLHDLRHEATSRLFEKGLNP 308

Query: 305 HELMATYGWKTVDQAETYTK 324
            E+ +  G KT+   + YT 
Sbjct: 309 MEVASITGHKTLSMLQRYTH 328


>gi|300872279|gb|ADK38967.1| IntI4 [Vibrio sp. V49(2010)]
          Length = 297

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 41/290 (14%), Positives = 88/290 (30%), Gaps = 57/290 (19%)

Query: 93  ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEY 152
            ++  +  + I          +  K +   +         A +  +       +  ++  
Sbjct: 1   AAYLHWITRYIHFHNKKHPSLMGDKEVEEFLTYLAVQGKVATKTQSLALNSLSFLYKE-- 58

Query: 153 VAINP-CLSV--ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDS 209
           +   P  L +  +R + + +     T++++++         + +L  + L  SGLR  + 
Sbjct: 59  ILKTPLSLEIHFQRSQLERKLPVVLTRDEIRRLLEIVDP--KHQLPIKLLYGSGLRLMEC 116

Query: 210 CRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLAMTPIGKETFFINN-------- 259
            R  VQ +  +  +I+    K G   TV L     + L       + ++  +        
Sbjct: 117 MRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYQHLKEQIALAKRYYDRDLHQKNYGG 176

Query: 260 --------------------------------------DKQKMNATQFSIWFKAKATKAG 281
                                                  +  +N T      +  A +AG
Sbjct: 177 VWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVMRRHHINETVLQKAVRRSAQEAG 236

Query: 282 VNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           + K+   H +R   AT   + GA    +    G   V   + YT   DR 
Sbjct: 237 IEKTVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHVLDRW 286


>gi|256024112|ref|ZP_05437977.1| putative phage integrase [Escherichia sp. 4_1_40B]
          Length = 387

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 42/214 (19%), Positives = 79/214 (36%), Gaps = 22/214 (10%)

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           ++    L+ ++ L + A  +E+  ++    ++ P+ K + IR     + Q+      E  
Sbjct: 144 ATKATHLSFIKALLR-AAEREWKMLDKAPIIKVPQPKNKRIRWLEPHEAQRLIDECPEPL 202

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGFMKLLA 246
           +     EF L +GLR S+      Q +         + +  K+   I V L D   ++L 
Sbjct: 203 KS--VVEFALATGLRRSNIINLEWQQIDMQRRVAWINPEESKSNRAIGVALNDTACRVLK 260

Query: 247 MTPIGKETF-------FINNDK------QKMNATQFSIWFKAKATKAGVNK-SAHGVRKF 292
                   +           D       +KM     + W KA   +AG++    H +R  
Sbjct: 261 KQIGNHHHWVFVYKESCTKPDGTKAPTVRKMRYDANTAW-KAALRRAGIDDFRFHDLRHT 319

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            A+    AG     L    GW++++    Y   A
Sbjct: 320 WASWLVQAGVPLSVLQEMGGWESIEMVRRYAHLA 353


>gi|225378536|ref|ZP_03755757.1| hypothetical protein ROSEINA2194_04204 [Roseburia inulinivorans DSM
           16841]
 gi|225209639|gb|EEG91993.1| hypothetical protein ROSEINA2194_04204 [Roseburia inulinivorans DSM
           16841]
          Length = 402

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 63/383 (16%), Positives = 118/383 (30%), Gaps = 74/383 (19%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGH--GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64
           LP +     +  G   Y  R     GRR+ L              A+     K    ++P
Sbjct: 8   LPDY--GTVSMKGTQYYRTRVTDQQGRRVSLYARTREELYQKEQEAIQQIENKTYRRSTP 65

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISF-ESYFDQIIRKSGDFDYRKITTKHIRSGV 123
             +    KWL+ +   SA    + + + I +     + II+  GD     +T   IR  +
Sbjct: 66  TVEEYCEKWLLMQ---SAQ---IRMTTLIDYTSKVKNYIIKPLGDMHMGDVTADDIRLAL 119

Query: 124 ESRKHTPSSAIQFLTSM-RVLFKWAVRQEYVAINPCLSVER--PKRKTEGIRPWTKEDMQ 180
            +     +S  + +  + + +F  A+  + +  NP + +++       +   P T E + 
Sbjct: 120 LAASKKSASVYKSVNVIYKCIFTAAMESKIIDENPTIYLKKNVGGIPQKDRLPLTDEQVD 179

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQ--------- 227
           +       G  P +     LY+GLR  +        +  +      +++           
Sbjct: 180 KLLDAIY-GLPPYVFVMLGLYAGLRREEILGLQWDSVYLDCEAPYLTVRRAWHTEHNRPV 238

Query: 228 -----KTGTIIT-VELPDGFMKLLAMTP--IGKETFFINNDKQKMNATQFSIWF------ 273
                KT      V LPD  ++ L         +    N D   ++ TQF   +      
Sbjct: 239 ILTELKTKAAHRNVPLPDNLLECLREAKKTSTSDYVVANRDGDPLSYTQFKRLWQYIVTR 298

Query: 274 --KAKA-------------------TKAGVNK----------SAHGVRKFSATISADAGA 302
             K +                     KA  N           + H +R    T    A  
Sbjct: 299 TTKERCYYRYEDGKRVKHTVKPVLGQKAAHNGNVVYSLDFEVTPHQLRHTYITNLIHASV 358

Query: 303 TAHELMATYGWKTVDQA-ETYTK 324
               +    G ++     + Y K
Sbjct: 359 DPKTVQYLAGHESSKITMDIYAK 381


>gi|171741083|ref|ZP_02916890.1| hypothetical protein BIFDEN_00149 [Bifidobacterium dentium ATCC
           27678]
 gi|171276697|gb|EDT44358.1| hypothetical protein BIFDEN_00149 [Bifidobacterium dentium ATCC
           27678]
          Length = 392

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 66/404 (16%), Positives = 131/404 (32%), Gaps = 73/404 (18%)

Query: 1   MTPSLRLPPFVTKERTRHGKIIYYFRKGH----GRRIRLPYPHESTFIPAYMSALTGSTP 56
           M P  R+P        +HG   Y   +G       R+R+   ++ +F     SA +    
Sbjct: 1   MMPRPRIP------IGQHGTFRYTHNEGGQWVAHCRMRM---NDGSFRQLERSAPSKERA 51

Query: 57  K---REYINSPRKKP-------TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS 106
           +    EY    +++        TTL  L   +  +      A N+  ++ + + + + + 
Sbjct: 52  RILLEEYCQQLKRRTFGAIEPNTTLGDLAGLWLATQ--TGKAENTINAYTNAYRKYVSRL 109

Query: 107 GDFDYRKITTKHIRSGVESRKHTPSSA--IQFLTSMRVLFKWAVRQEYVAINPCLSVERP 164
                 + T   +++ ++       SA        +  + + AV Q  +  NP   ++R 
Sbjct: 110 DSLTIAEATPLVLQTFLDGVAGGSGSATVSMVKLVLSGMMEMAVAQGAILHNPVRDLKRM 169

Query: 165 KRKTEGIRPWTKEDMQQFKSF-----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ- 218
            R  EG      + +Q+F        W            +LY+GLR  ++C      +  
Sbjct: 170 SRHREGSVAIPADKVQKFLKAVETNEWLVSHDEADIIRLMLYTGLRVGEACGLCWDCVDF 229

Query: 219 ------NNIFSIKTQKTG-----------TIITVELPDGFMKLLA---------MTPIGK 252
                     +I+ +  G           +  T+  P   M +L            P   
Sbjct: 230 TAGTLSVERIAIRCKGEGMTLQAHPKTEHSRRTITAPKSIMHMLELRRISLDTGGIPNPH 289

Query: 253 ETFFINNDKQK------MNATQFSIWFKAKATKAGVNK----SAHGVRKFSATISADAGA 302
              F              +    +   + +    G  K    S H +RK  A++  DAG 
Sbjct: 290 NLVFPRPLSGGSCEYLVRSPNVVASDLRREREALGFGKGESLSPHSLRKTCASLLHDAGL 349

Query: 303 TAHELMATYGWKTVDQAE-TYTKGADRIRLGIKNSRRISSVVDS 345
              ++    G       E  Y     R R   K +  + +++++
Sbjct: 350 NTLDVADYLGHSDTATTENVYIA---RGRNSGKAANALETMIEN 390


>gi|66396123|ref|YP_240491.1| ORF010 [Staphylococcus phage 55]
 gi|62636541|gb|AAX91652.1| ORF010 [Staphylococcus phage 55]
          Length = 349

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 45/291 (15%), Positives = 96/291 (32%), Gaps = 39/291 (13%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFES-YFDQIIRKSGDFDYRKITT---KHIRSGVES 125
           T  ++ + Y +++    L   ++   ++ Y      K G     KIT    +  R  +  
Sbjct: 59  TFDYVFNHYLENS---DLRPKTKRRKQNEYHKHFKAKFGHIKMNKITQNQCQEFRKYLIE 115

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
              + +SA    +  +V+  +A +   +  +P +S++   R     +   +E+ ++ +  
Sbjct: 116 NVASTNSARTIWSGFKVVINYAKKYFGLRTDPTISIKPIPRVKPKPKFMMREEFEE-RIK 174

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH---------------LQNNIFSIKTQKTG 230
             E    R  F  + Y+GLR  ++                      + N     + +   
Sbjct: 175 DIEEQDYRELFTLMFYTGLRIGEAMALVWTDYNKYKKEISINKTMDISNRTIYPRPKTDS 234

Query: 231 TIITVELPD----------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280
           +   V LP              K L      +  F        M    +S   K    KA
Sbjct: 235 SEDIVPLPKFINTMLTERHQREKELNKYFDERSYFIF----GGMAPKHYSHVQKKF-QKA 289

Query: 281 GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIR 330
             + + H +R   A+  A+ G     L +      + +   TY+    + +
Sbjct: 290 FPHYNIHALRHSYASYLANNGVDIFVLQSLMRHAQITETMGTYSHLYTQKK 340


>gi|138557|sp|P06723|VINT_BP186 RecName: Full=Integrase
 gi|3337277|gb|AAC34175.1| Int [Enterobacteria phage 186]
          Length = 336

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 45/281 (16%), Positives = 83/281 (29%), Gaps = 34/281 (12%)

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
           ++   TLK L+  +  SAH  +L    +     +        G+   R    +      E
Sbjct: 51  KEDRRTLKELVDSWY-SAHGITLKDGLKRQLAMH--HAFECMGEPLARDFDAQMFSRYRE 107

Query: 125 SR------------KHTPSSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGI 171
            R            + +P +    L   R +F    R   +   NP  ++   + +   +
Sbjct: 108 KRLKGEYARSNRVKEVSPRTLNLELAYFRAVFNELNRLGEWKGENPLKNMRPFRTEEMEM 167

Query: 172 RPWTKEDMQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229
              T + + Q     +    P L       L +G R S++       L     +    K 
Sbjct: 168 TWLTHDQISQLLGECNRHDHPDLETVVRICLATGARWSEAESLRKSQLAKYKITYTNTKG 227

Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--- 286
               TV +     + L             +DK+    +     F++   + G+   A   
Sbjct: 228 RKNRTVPISKELYESLP------------DDKKGRLFSDCYGAFRSALERTGIELPAGQL 275

Query: 287 -HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            H +R   A+     G     L    G   +     Y   A
Sbjct: 276 THVLRHTFASHFMMNGGNILVLQRVLGHTDIKMTMRYAHFA 316


>gi|69245857|ref|ZP_00603674.1| Phage integrase [Enterococcus faecium DO]
 gi|257879174|ref|ZP_05658827.1| phage integrase [Enterococcus faecium 1,230,933]
 gi|257882007|ref|ZP_05661660.1| phage integrase [Enterococcus faecium 1,231,502]
 gi|257890004|ref|ZP_05669657.1| phage integrase [Enterococcus faecium 1,231,410]
 gi|258615572|ref|ZP_05713342.1| phage integrase family site specific recombinase [Enterococcus
           faecium DO]
 gi|260560179|ref|ZP_05832356.1| phage integrase [Enterococcus faecium C68]
 gi|261208049|ref|ZP_05922724.1| phage integrase [Enterococcus faecium TC 6]
 gi|289565520|ref|ZP_06445968.1| phage integrase [Enterococcus faecium D344SRF]
 gi|293563460|ref|ZP_06677908.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium E1162]
 gi|294615159|ref|ZP_06695043.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium E1636]
 gi|294620828|ref|ZP_06700032.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium U0317]
 gi|68195559|gb|EAN10001.1| Phage integrase [Enterococcus faecium DO]
 gi|257813402|gb|EEV42160.1| phage integrase [Enterococcus faecium 1,230,933]
 gi|257817665|gb|EEV44993.1| phage integrase [Enterococcus faecium 1,231,502]
 gi|257826364|gb|EEV52990.1| phage integrase [Enterococcus faecium 1,231,410]
 gi|260073746|gb|EEW62071.1| phage integrase [Enterococcus faecium C68]
 gi|260077633|gb|EEW65349.1| phage integrase [Enterococcus faecium TC 6]
 gi|289162718|gb|EFD10570.1| phage integrase [Enterococcus faecium D344SRF]
 gi|291591979|gb|EFF23604.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium E1636]
 gi|291599613|gb|EFF30626.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium U0317]
 gi|291604462|gb|EFF33948.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium E1162]
 gi|323481381|gb|ADX80820.1| phage integrase family protein [Enterococcus faecalis 62]
          Length = 380

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 45/309 (14%), Positives = 97/309 (31%), Gaps = 40/309 (12%)

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKH 118
           Y    +    T + L +E+       S+  ++      Y + QI+   G      I+  +
Sbjct: 58  YGVKKKAPDMTFEDLYNEWITHQR-TSVKASTIAISVRYANNQILPAFGKLKLSNISVPY 116

Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS--VERPKRKTEGIRPWTK 176
            +  V+       S          + ++ V  +Y+  NP     + R K   +  + ++K
Sbjct: 117 CQKVVDEWHSKYESYDYMRKQTAQILRYGVAMQYIDNNPMEKTLLPRKKEYEKNRKFYSK 176

Query: 177 EDMQQFKSFWSE--GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--------------- 219
           E++      + +    +    F  L Y+G+R S+      + +                 
Sbjct: 177 EELNNLLDAFKDFGNMKQYAFFRLLAYTGMRKSEVLALQWKDIDTFNKELHVNKTLAVDE 236

Query: 220 -NIFSIKTQKTGTIITVELPD----------------GFMKLLAMTPIGKETFFINNDKQ 262
                I++ KT     V   D                 ++KL   T   ++  F      
Sbjct: 237 FGKVIIQSPKTRASRRVISLDTETLSILNNWKLQQKEEYLKLGYNTSSKEQHVFTTVKNT 296

Query: 263 KMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-E 320
                  + W +    K  + + + HG R   A++  +AG +   +    G +      +
Sbjct: 297 LYIPNTVNDWLRYILKKYNLPRITPHGFRHTHASLLLEAGESVKVVQQRLGHENSKVTLD 356

Query: 321 TYTKGADRI 329
            Y    +  
Sbjct: 357 IYAHITNNA 365


>gi|172058626|ref|YP_001815086.1| integrase family protein [Exiguobacterium sibiricum 255-15]
 gi|171991147|gb|ACB62069.1| integrase family protein [Exiguobacterium sibiricum 255-15]
          Length = 287

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 38/261 (14%), Positives = 92/261 (35%), Gaps = 18/261 (6%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
           L+ L++   +S  +   +  +R ++          +   D   +   H    +  + + P
Sbjct: 6   LERLLAIIEQSPSY---SPLTRKAYRVDARHFCTHAETIDIPSM---HRYITLLKQTYAP 59

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP-WTKEDMQQFKSFWSEG 189
           ++  + + ++  LF   V ++ +  NP   +++P R     R  ++  + +       + 
Sbjct: 60  TTVSRRIHALATLFDALVAEKSIPSNPLSRIKKPTRPLPKHRTAFSYTEARSVIETLQDE 119

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFM----K 243
           +     +  LL++GLR +++ +     +        ++  K      V L D  +    +
Sbjct: 120 TM-YTFYFLLLHTGLRFNEARQLCRTDIDLTERQLFVRHGKGQKTRYVPLHDELVTVLIR 178

Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK-AGVNKSAHGVRKFSATISA-DAG 301
            L + P G    F N     ++  Q     +  + +        H +R   AT    +  
Sbjct: 179 YLDLQPNG--PLFQNTAGGLLDPNQTRRQLRLASEQLLKRTLRPHDLRVTFATTIYREHR 236

Query: 302 ATAHELMATYGWKTVDQAETY 322
           A    +M   G       + Y
Sbjct: 237 ADLLTVMRLLGHSDAKTTQQY 257


>gi|328883029|emb|CCA56268.1| hypothetical protein SVEN_2982 [Streptomyces venezuelae ATCC 10712]
          Length = 414

 Score = 86.6 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 70/400 (17%), Positives = 119/400 (29%), Gaps = 66/400 (16%)

Query: 8   PPFVTKERTRHG-KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
           P  V  +R   G +    +    G      +P +   +       T +   R     PR 
Sbjct: 20  PRRVKSDRYGTGMRYRARYVGPDGTEKSKSFPDKQKRLAELWLIETAADMARGQYVDPRA 79

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVES 125
              T +    ++  +    +  VNSR + E           G          HIR+ +  
Sbjct: 80  GRVTFRQFAEKWVAT---HTTEVNSREAAERRLRLHAFPYIGTRPLASFQPGHIRTWLGE 136

Query: 126 RKHTPSSAIQ---FLTSMRVLFKWAVRQEYVAINPCLS--VERPKRKTEGIRPWTKEDMQ 180
            + +  +A        ++   F  A+    ++ NPC +  ++ PK     + PWT + + 
Sbjct: 137 LESSVPAASHRRIVFGTVSAAFSAALDDGLISKNPCKAKSIQIPKPSHTRVVPWTAKQV- 195

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQ----------- 227
            F    +     R   +     GLR  +        +       S++ Q           
Sbjct: 196 -FGVRAALPEHLRATVDAAGGCGLRQGEVFGLSEDEVDHDGGWLSVEHQLKRIRGKFVFA 254

Query: 228 --KTGTIITVELPDGFMKLLAM---------------TPIG----KETFFINNDKQKMNA 266
             K G +  V LP      L                 TP G    K   F  +    +  
Sbjct: 255 LPKGGKVRDVPLPPSVAAALKAHSEKYPPVRITLPWRTPDGPLVTKSLIFTGSAGGHIRV 314

Query: 267 TQFSIWFKAKATKA-GV--------------NKSAHGVRKFSATISADAGATAHELMATY 311
           + F+ +    A  A G+                  H +R F A++  DAG     L    
Sbjct: 315 SHFNDFMWKPALAAVGIIPEPEEGERYASAPEHGMHALRHFYASVLLDAGENIRALSQYL 374

Query: 312 GWKTVD-QAETYTK----GADRIRLGIKNSRRISSVVDSD 346
           G         TYT        R R  ++   R ++   SD
Sbjct: 375 GHADPGFTLRTYTHLMPSSEGRTRNAVEALYRSNTDHTSD 414


>gi|323937185|gb|EGB33465.1| phage integrase [Escherichia coli E1520]
          Length = 399

 Score = 86.6 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 39/251 (15%), Positives = 97/251 (38%), Gaps = 21/251 (8%)

Query: 93  ISFESYFDQIIRKSGDFDYRKITTKHI--------RSGVESRKHTPSSAIQFLTSMRVLF 144
              + +   I    G   Y  +  + I           +  +++ PS+  + L  ++ + 
Sbjct: 125 KDVQRFTQYIEPCLGKIRYCDLRAREIQQVLFDMLEGRIHGQQYAPSTCNRALAILKTMG 184

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL--AFEFLLYS 202
           ++A+RQ+ +  N    +   K   +  R +  +++++     +             LL +
Sbjct: 185 RYALRQDVLEKNEADKIPLLKENNQRTRFFDADEIRRILDAAARYPNKAAGGLIAMLLLT 244

Query: 203 GLRCSDSCRAGVQHLQNN--IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE---TFFI 257
           G R S+      +H+  +     I   K G   TV L +  + ++   P        F I
Sbjct: 245 GTRKSEMLNVMHKHIDRDNRSLFIPYTKNGRSRTVYLSEAALSIIDSIPRVGSNPYLFAI 304

Query: 258 NNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGA-TAHELMATYGW 313
            ++ + ++  +++  ++    + G++KS    H  R   A++   +G  + +++ A    
Sbjct: 305 KDNGKPISEPRWA--YEKILAECGIDKSEVCFHTTRHSVASLLVSSGQYSLYDVKAQLAH 362

Query: 314 KTVDQAETYTK 324
            ++   E Y K
Sbjct: 363 ASIQSTERYAK 373


>gi|297158542|gb|ADI08254.1| putative integrase [Streptomyces bingchenggensis BCW-1]
          Length = 416

 Score = 86.6 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 55/374 (14%), Positives = 118/374 (31%), Gaps = 61/374 (16%)

Query: 10  FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
           +  K+   HG++    R       R         +   +  +  +  +++     +    
Sbjct: 17  YFGKDGKWHGRVTVGVRDDGRPDRRHVERRTKAEVTKAVREMERARDEKKLRKPGQNW-- 74

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH 128
           TL+  +  + ++     ++ N+   +E      ++   G     ++  +H+       + 
Sbjct: 75  TLQSWLEHWVENIAKPYVSENTYDGYEVDVRVHLVPGLGAHKLDRLEPEHLERFYRKMQE 134

Query: 129 T---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +     +A     ++RV    AVR+ +V  N     + P+ + E I P+T E++Q     
Sbjct: 135 SGSSAGTAHHVHRTIRVALGEAVRRGHVPTNVAEIAKAPRLEEEDIEPYTIEEVQSLLVE 194

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--------------- 230
            ++  +    +   L  GLR  ++     + +      ++ +K                 
Sbjct: 195 AAK-LRNSTRWVVALALGLRQGEALGLHWEDVDLGAGYVRIRKNRLRPKYAHGCGDGEPC 253

Query: 231 ------------------------TIITVELPDGFMKLLA--------------MTPIGK 252
                                      TV LPD  +KLL                  +GK
Sbjct: 254 GRKAGYCPRRAQIRREHKSTKSRAGRRTVGLPDPLIKLLRQHQEEQERERAEAGADWVGK 313

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATY 311
              F +     ++       +K     AGV +   H  R  +AT+    G     + A  
Sbjct: 314 GYVFASPIGGPLSPNTDYHVWKRLLRDAGVRDGRLHDARHTAATVLLLLGVPDVVVDAIM 373

Query: 312 GWKTVDQAETYTKG 325
           GW+    A    + 
Sbjct: 374 GWEPGGAARMRARY 387


>gi|295116103|emb|CBL36950.1| Site-specific recombinase XerD [butyrate-producing bacterium SM4/1]
          Length = 289

 Score = 86.6 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 40/274 (14%), Positives = 99/274 (36%), Gaps = 24/274 (8%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYR------KITTKHIRSGVESR 126
             +S + +     +LA N+   +++Y    +    + +        ++    +++   SR
Sbjct: 2   DYLSVFIEMLQAKNLAPNTIRGYQTYLKPYLSYLLERNISPEHASWEMVRDFLKTLQTSR 61

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             +  +    ++ ++  + + + Q +   +P     R  R      P  +  +  F +  
Sbjct: 62  HLSDRTMNMVISHLQFFWIYVLHQPW---DPSQIPFRKFRTYLPFVP-DRNQVALFLNSL 117

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKL 244
            +  + RLA   L  +GLR  + C    +++   ++   I   K  +   V +P+   + 
Sbjct: 118 DDP-KARLACSILYAAGLRLDELCHLECRYIFLSSHRLYIPVSKNRSDRYVPIPESICRD 176

Query: 245 LA------MTPIGKETFFIN---NDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFS 293
           +          +  +T+      N  + M+          +    G++    AH +R   
Sbjct: 177 IREYWYSCPAHMKPKTWLFTQQTNRSRPMDKQWLQRIILDRRNALGMDSRFCAHSLRHAY 236

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           AT S + G     L +  G ++++    Y   A 
Sbjct: 237 ATHSYENGLDLLSLKSRLGHRSLNSTAIYVHLAS 270


>gi|294617989|ref|ZP_06697594.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium E1679]
 gi|291595798|gb|EFF27086.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium E1679]
          Length = 381

 Score = 86.6 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 45/316 (14%), Positives = 107/316 (33%), Gaps = 44/316 (13%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH 128
           T + +   + +S    ++   +++  E  F+  I+ K G F  ++IT KH++  +     
Sbjct: 68  TFQEIYELWYESYK-TTVKEVTQLKIEIKFNKWILPKYGKFRIKEITVKHVQKILNQWAK 126

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR----KTEGIRPWTKEDMQQFKS 184
                    +++  +FK+A+    +  NPC  V  P R    K + ++ +++  ++    
Sbjct: 127 MTDQYKVLHSTVSRIFKYAMTLGLITKNPCELVIMPNRNVEKKKDTVKIYSRNQLEILFQ 186

Query: 185 FWS------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------GTI 232
           +             +    FL +SG R S++       +  +  ++   KT      G  
Sbjct: 187 YLESKRSTYRADYDKTLLRFLFFSGCRISEALALNWSDIDFDSNTVTINKTLSQTKYGYK 246

Query: 233 ITVELP--------------DGFMKL--------LAMTPIGKETFFINNDKQKMNATQFS 270
           I+                  +   K         L +        F    K+ +      
Sbjct: 247 ISSPKTKNSYGSLSLDNKTINWLKKWQINQKRYMLTLGITDPTMIFCGIYKEIITKHAIY 306

Query: 271 IWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADR 328
                    +G+     H  R   A++  ++G +  E+       ++    +TY      
Sbjct: 307 SRMITICKNSGIPFLGNHVTRHTHASMLLESGVSMKEVQERLRHSSIKLTMDTYAHLTKE 366

Query: 329 IRLGIKNSRRISSVVD 344
            +   K   +++  ++
Sbjct: 367 TK--EKTVEKLAEHLN 380


>gi|255690096|ref|ZP_05413771.1| integrase [Bacteroides finegoldii DSM 17565]
 gi|260624375|gb|EEX47246.1| integrase [Bacteroides finegoldii DSM 17565]
          Length = 308

 Score = 86.6 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 33/274 (12%), Positives = 87/274 (31%), Gaps = 40/274 (14%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDF-DYRKITTKHIRSGVESRKHTPSSAI 134
           +Y KS+ + +        +    +  I+   GD  +  +   +        ++    S  
Sbjct: 20  KYVKSSTYSA--------YALILENHILPTFGDKYELLENEVQEFVLQKLQQRLRAKSVK 71

Query: 135 QFLTSMRVLFKWAVRQEYVA-INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
             L  ++++ K+  +   ++  + C+    P+   +        + +    + S     R
Sbjct: 72  DILIVLKMVMKFGAKLGILSYQDWCIKFPPPQENKQLN-VLNIANHKAILQYISNHFTFR 130

Query: 194 -LAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ---------------------KT 229
            L     L +G+R  + C      +   N +  I+                       KT
Sbjct: 131 NLGIYICLTTGIRIGEICALTWDDIDIINGVICIRKTIERIYILDGEKIHTEIIIGTPKT 190

Query: 230 GTII-TVELPDGFMKLLAMTP--IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KS 285
              I  + +    +K+L      +  + + + N+++      +  ++K    +  +    
Sbjct: 191 QNSIRDIPMNKELLKMLRPLKKIVNGKFYVLTNEEKPTEPRTYRNYYKRMMEQLNIPPLK 250

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
            HG+R   AT   ++      +    G   +   
Sbjct: 251 FHGLRHSFATRCIESNCDYKTVSVILGHSDITTT 284


>gi|15923837|ref|NP_371371.1| integrase [Staphylococcus aureus subsp. aureus Mu50]
 gi|122891715|ref|YP_001004261.1| integrase [Staphylococcus phage phiETA2]
 gi|156979174|ref|YP_001441433.1| integrase [Staphylococcus aureus subsp. aureus Mu3]
 gi|255005635|ref|ZP_05144236.2| integrase [Staphylococcus aureus subsp. aureus Mu50-omega]
 gi|258440883|ref|ZP_05690718.1| integrase [Staphylococcus aureus A8115]
 gi|282894657|ref|ZP_06302884.1| integrase [Staphylococcus aureus A8117]
 gi|304443267|ref|YP_003857097.1| integrase [Staphylococcus phage SAP-26]
 gi|14246616|dbj|BAB57009.1| integrase [Staphylococcus aureus subsp. aureus Mu50]
 gi|121309194|dbj|BAF43816.1| integrase [Staphylococcus phage phiETA2]
 gi|156721309|dbj|BAF77726.1| integrase [Staphylococcus aureus subsp. aureus Mu3]
 gi|257852397|gb|EEV76318.1| integrase [Staphylococcus aureus A8115]
 gi|282762934|gb|EFC03067.1| integrase [Staphylococcus aureus A8117]
 gi|302749875|gb|ADL66960.1| integrase [Staphylococcus phage SAP-26]
          Length = 349

 Score = 86.6 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 45/291 (15%), Positives = 95/291 (32%), Gaps = 39/291 (13%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFES-YFDQIIRKSGDFDYRKITT---KHIRSGVES 125
           T  ++   Y +++    L   ++   ++ Y      K G     KIT    +  R  +  
Sbjct: 59  TFDYVFHHYLENS---DLRPKTKRRKQNEYHKHFKAKFGHIKMNKITQNQCQEFRKYLIE 115

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
              + +SA    +  +V+  +A +   +  +P +S++   R     +   +E+ ++ +  
Sbjct: 116 NVASTNSARTIWSGFKVVINYAKKYFGLRTDPTISIKPIPRVKPKPKFMMREEFEE-RIK 174

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH---------------LQNNIFSIKTQKTG 230
             E    R  F  + Y+GLR  ++                      + N     + +   
Sbjct: 175 DIEEQDYRELFTLMFYTGLRIGEAMALVWTDYNKYKKEISINKTMDISNRTIYPRPKTDS 234

Query: 231 TIITVELPD----------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280
           +   V LP              K L      +  F        M    +S   K    KA
Sbjct: 235 SEDIVPLPKFINTMLTERHQREKELNKYFDERSYFIF----GGMAPKHYSHVQKKF-QKA 289

Query: 281 GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIR 330
             + + H +R   A+  A+ G     L +      + +   TY+    + +
Sbjct: 290 FPHYNIHALRHSYASYLANNGVDIFVLQSLMRHAQITETMGTYSHLYTQKK 340


>gi|303239571|ref|ZP_07326097.1| integrase family protein [Acetivibrio cellulolyticus CD2]
 gi|302592949|gb|EFL62671.1| integrase family protein [Acetivibrio cellulolyticus CD2]
          Length = 417

 Score = 86.6 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 44/336 (13%), Positives = 94/336 (27%), Gaps = 66/336 (19%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH 128
           T K  I  +        L       ++   + +II   G     +I   H+     +   
Sbjct: 71  TFKEFIDRWVIDYAEKQLEPKKLHCYKIMLNNRIIPTLGHLKLDRIQPNHLIEFYNNLAE 130

Query: 129 ------------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
                       +  +  ++   +  + + A++ + +  NP   V+ PK + +    + +
Sbjct: 131 PGIRQDGKGDTLSEPTIQKYHRIISSILQDAMQWQLIISNPASRVKPPKVRKKEAGTFDE 190

Query: 177 EDMQQF-KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----------------N 219
           E      ++  SE  + ++       +GLR  +      +++                  
Sbjct: 191 EKTALLLETLESEQLKYKVLVLLGTVTGLRRGELVALKWENVDLKNCIIDVRYSAQYVPG 250

Query: 220 NIFSIKTQKTGTIIT-VELPDGFMKLLAMTP--------------IGKETFFINNDKQKM 264
              SIK  KT + +  + +P     LL                   G +  F   + + M
Sbjct: 251 KGVSIKEPKTKSSLRKIAIPSSVKDLLKSYKQFQSQERLESGDQWKGDDWVFTQLNGEIM 310

Query: 265 NATQFSIWFKAKATK--------AGVNK-----------SAHGVRKFSATISADAGATAH 305
           +    + WFK               + K             H +R  +AT+    G    
Sbjct: 311 HPDTPTKWFKKFLEDYNEKVHSDKNIPKNQKEKYLLPVIKFHCLRHTAATLLIHKGLNVR 370

Query: 306 ELMATYGWKTVDQAE-TYTKGADRI-RLGIKNSRRI 339
            + +  G          Y        +        I
Sbjct: 371 AVSSRLGHANTSTTMNIYAHALQTADKQATDMMESI 406


>gi|312200707|ref|YP_004020768.1| integrase family protein [Frankia sp. EuI1c]
 gi|311232043|gb|ADP84898.1| integrase family protein [Frankia sp. EuI1c]
          Length = 500

 Score = 86.6 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 49/244 (20%), Positives = 88/244 (36%), Gaps = 22/244 (9%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPH--ESTFIPAYMSALTGSTPKREYI 61
           S R P    K +  HGK  +         + +       S F     SA   +  K   +
Sbjct: 21  SRRCPK--LKGKKPHGKWSWRIDVPDELVLLVGRTGLRGSGFATK-DSAEKDAEDKLAIV 77

Query: 62  NSPRKKPTTLKWLISEYRKS--AHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKH 118
            + ++   TL   +S+Y     A    L   +R  +E+     +    G      +   H
Sbjct: 78  RAGQQHVGTLT--VSQYLDEWLAGKRRLRPTTRRGYETNIRLHLKPLIGTVPLSGLRKAH 135

Query: 119 IRSGVES---------RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
           I + +           RK  P +  +   ++R     AV    ++ NPC  VE P+    
Sbjct: 136 IDALIRRLEDSNATRRRKIGPKTIAEIFGTLRAALNDAVDNRLISFNPCNGVELPENDRA 195

Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQ 227
            + PW  +++ +F    + G +    FE +   GLR  ++C      L     + +I+ Q
Sbjct: 196 EVEPWEAKEIGRFLDE-AAGDRLSALFELIALHGLRRGEACGGTWDGLDGETGVLTIRQQ 254

Query: 228 KTGT 231
            T +
Sbjct: 255 ITDS 258


>gi|146329482|ref|YP_001209203.1| integrase A1 [Dichelobacter nodosus VCS1703A]
 gi|563255|gb|AAB00935.1| integrase A [Dichelobacter nodosus]
 gi|146232952|gb|ABQ13930.1| integrase A1 [Dichelobacter nodosus VCS1703A]
          Length = 401

 Score = 86.6 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 53/342 (15%), Positives = 112/342 (32%), Gaps = 36/342 (10%)

Query: 10  FVTKERTRHGKIIYYFRK-----------GHGRRIRLPYPHESTFIPAYMS------ALT 52
            +T + T  G   + FR            G    + +           Y           
Sbjct: 35  GLTLKITDRGSYFWNFRYYINGRERNMSLGRYPAMSIEAARGEALELRYHLRQGLDPLAE 94

Query: 53  GSTPKREYINSPRKKPTTLKWLISEYR--KSAHWGSLAVNSRISFESYFDQIIRKSGDFD 110
               +  Y+   + +  T +++  E+   K   W +     +    +    +    G   
Sbjct: 95  RKKKQAAYLAEEKTQKETFEFVAREWYQLKRPEWKNEKHA-QQVITTLEQFVFPFIGKKP 153

Query: 111 YRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170
             +I+   +   +E     P +A +    +R +F +A++ + ++ NP +++ +  R T  
Sbjct: 154 ISRISPPELLKVMEKLYDRPETASRVKQRIRAVFDYAIQTDRLSRNPAIALPKIFRSTIA 213

Query: 171 IRP-WTKEDMQQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227
            +P     ++  F         P+  LA   L+ +  R  +      Q LQ N + I  +
Sbjct: 214 KQPSLPARELGIFFKQLDTYGNPKTALALRLLILTMTRSGELRFGQWQELQGNEWHIPAE 273

Query: 228 --KTGTIITVELPDGFMKL---LAMTPIGKETFFIN-NDKQKMNATQFSIWFKA--KATK 279
             K      V L D  +++   L         +F+  N    ++ T  S+  K    A +
Sbjct: 274 RMKMNRPHIVPLSDWALEILDELRSLRRNNSPYFVTGNRNTPLSDTTLSLAMKRLGYAGR 333

Query: 280 AGVNKSAHGVRKFSATISADAGA-TAHELMATYGWKTVDQAE 320
           A      HG R  ++T   ++G      +         +   
Sbjct: 334 A----VPHGFRATASTAMNESGLWNPDAIERQLAHTDENAVR 371


>gi|16124599|ref|NP_419163.1| site-specific tyrosine recombinase XerC [Caulobacter crescentus
           CB15]
 gi|221233288|ref|YP_002515724.1| site-specific tyrosine recombinase XerC [Caulobacter crescentus
           NA1000]
 gi|13421495|gb|AAK22331.1| integrase/recombinase XerC, putative [Caulobacter crescentus CB15]
 gi|220962460|gb|ACL93816.1| integrase/recombinase, XerC-CodV family [Caulobacter crescentus
           NA1000]
          Length = 304

 Score = 86.6 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 42/271 (15%), Positives = 87/271 (32%), Gaps = 32/271 (11%)

Query: 85  GSLAVNSRISFE----SYFDQIIRKSGDF----DYRKITTKHIRSGVESRKHT-----PS 131
              +  +  ++     +Y + +    G+        +I+   +R  +  R+       P 
Sbjct: 18  RRASPRTVRAYGDNVLAYLNFLEAHRGEALSLSALAEISAADLRGYLAWRRQGEHALAPR 77

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLS-VERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           S  Q L+S+R   ++ + Q +   N  +  V  P+ K    RP +++  +   +  +E +
Sbjct: 78  SLSQALSSIRAFHRY-LDQRHGVANAAVDLVRGPRLKIGLPRPVSEDQARDLITQAAEDT 136

Query: 191 --------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
                   +       L   GLR S++    +           T K G    V + D   
Sbjct: 137 ERDPWETARDEAVLTLLWGCGLRISEALSLRMSDAPLAATLRITGKGGKTRIVPVLDAVR 196

Query: 243 KLLAMTP-------IGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293
             +              E  F       ++        +    + G+    + H  R   
Sbjct: 197 DAIEAYLDELPFNLAPDEALFRAKRGGPLSPRHVQGLVQTLRGRLGLSDRVTPHAFRHAF 256

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324
           AT    AGA    +    G  ++   + YT+
Sbjct: 257 ATHLLGAGADLRAIQDLLGHASLSTTQRYTQ 287


>gi|304397761|ref|ZP_07379638.1| integrase family protein [Pantoea sp. aB]
 gi|304354933|gb|EFM19303.1| integrase family protein [Pantoea sp. aB]
          Length = 392

 Score = 86.6 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 52/320 (16%), Positives = 98/320 (30%), Gaps = 25/320 (7%)

Query: 25  FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHW 84
            R G GR   +        +  Y + +      +  +   +KKP T+   I  +  +   
Sbjct: 51  HRLGIGRYPAVSLRDARIKVGEYKALIADGIDPKHQLVVKKKKP-TVHECIKYWYDNYVL 109

Query: 85  GSLAVNSRISFESY-FDQIIRKSGDFDYRKITTKHIRSGV-ESRKHTPSSAIQFLTSMRV 142
            SL  ++   +E    +++ +   D     I          E  +  P  A + L  +R 
Sbjct: 110 QSLRKSTAEVYERIVLNEMEKYFADIPIEHIPVSAWVDFFTEQEQANPLKARKLLVHLRG 169

Query: 143 LFKWAVRQEYVAI------NPCLSVERPKRKTEGIRPWTKEDMQQF----KSFWSEGSQP 192
              W  R++++        NP      PK    G    T   + +     +   +  S  
Sbjct: 170 AIAWCSRRQFIEDSSLLRLNPKEFGRNPKT---GDTVLTYRQLAKIWVENEKSTATFSSK 226

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIITVELPDGFMKLLAMT 248
            L    +LY G R S+   +  +                KT  II   +      LL  +
Sbjct: 227 MLIKSLILY-GSRNSELRESRKEDFDFEEGIWTLPSDRSKTNKIIRRPIFKQIEPLLKQS 285

Query: 249 PIGKETFFIN---NDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATA 304
                    +        ++    + + +    +    + +AH  R+  AT  A+ G   
Sbjct: 286 IDNGNGLLFHGAFERDVPLSIGSSTRYVRLLRDQLNFGDFTAHDFRRTMATRLAEEGIAP 345

Query: 305 HELMATYGWKTVDQAETYTK 324
           H +    G         Y K
Sbjct: 346 HVIEKMLGHDLGGVLAVYNK 365


>gi|296129328|ref|YP_003636578.1| integrase family protein [Cellulomonas flavigena DSM 20109]
 gi|296021143|gb|ADG74379.1| integrase family protein [Cellulomonas flavigena DSM 20109]
          Length = 308

 Score = 86.6 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 38/277 (13%), Positives = 90/277 (32%), Gaps = 27/277 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKH---TPSSAIQFLT 138
             ++ ++  ++    D ++  +   G     +I    +R  + +      + ++  +   
Sbjct: 26  RGVSEHTVRAYLGDVDHLLNHAVRQGVTRVDEIDLTVLRGWLAAMAAADLSRATVARRAA 85

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW--------SEGS 190
           + R  F+WA     V+ +P L +   +           E + +                 
Sbjct: 86  AARTFFRWATHTSRVSADPTLRLGTARAGGALPTVLALEPVTRLLDAARERAADGDPVHV 145

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDGFMKLLAMT 248
           +     E L  +G+R  + C A V  L     +++    G    +          + A  
Sbjct: 146 RDWATVELLYATGVRVGELCGADVDDLDLQELTLRVVGKGDKQRVVPFGRPAARAVGAWL 205

Query: 249 PIGKE---------TFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISA 298
             G+             +     +++  Q        A   GV+  + H +R  +AT   
Sbjct: 206 ATGRPRLVREDSCGALLLGRRGGRIDQRQVRTVVHELAALVGVDDVAPHALRHTAATHLL 265

Query: 299 DAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIK 334
           + G+    +    G  ++   + YT   A+R+R   +
Sbjct: 266 EGGSDLRTVQEILGHASLSTTQRYTHVSAERLRSAFE 302


>gi|221141368|ref|ZP_03565861.1| integrase-like protein [Staphylococcus aureus subsp. aureus str.
           JKD6009]
 gi|302750283|gb|ADL64460.1| integrase-like protein [Staphylococcus aureus subsp. aureus str.
           JKD6008]
          Length = 397

 Score = 86.6 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 51/342 (14%), Positives = 108/342 (31%), Gaps = 57/342 (16%)

Query: 23  YYFRKGHG--------RRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           YYFR   G        ++ R  +  +      Y   L      +    S  K   T K  
Sbjct: 14  YYFRANLGYDSKGKKIQKYRSGFNTKKEAREEYSKLLL----MKPEELSENKDKMTFKHY 69

Query: 75  ISE----YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
           I E    + K+     + + +  +      +            I    +++         
Sbjct: 70  IFEIFLPWYKT----QVKLRTYENRLPTIKKHFSYFDKMAVSDIEPIDVQNWQLKLSKKC 125

Query: 131 SSAIQFLTSMRVLFKWAVRQ----EYVAINPCLSVERPKRKTEGIRPWTKEDMQQF---- 182
            S   ++ +++ LF  A+ +         NP   +   K++   I  WTKE+ ++     
Sbjct: 126 KS--SYVRAVQGLFSVAMDRAIVLGITTTNPSKIIGNVKKQKSKIEFWTKEEFEKVISLI 183

Query: 183 --KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--------NNIFSIKTQ----- 227
             + ++       L F F+  +G+R  ++     + +         N     K Q     
Sbjct: 184 YKEDYYQHFLFISLWFLFM--TGMRIGEATAIQWEDIDFDSGVLTINKTLYYKNQSNYRF 241

Query: 228 ---KTGTIITVELPDG-----FMKLLAMTPIGKET-FFINNDKQKMNATQFSIWFKAKAT 278
              KT   +   + D        +   +     +T F ++ +         S   +  A 
Sbjct: 242 VEPKTKASVRHIVLDKCTLTYLSEWKEVQQNLIQTDFVMSYNGIPTQKHTLSYAIERYAK 301

Query: 279 KAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
            AG+++   HG+R   A++    G     +    G + ++  
Sbjct: 302 LAGIHRIRIHGLRHSHASLLISMGENPLIIKDRLGHEDIETT 343


>gi|149916267|ref|ZP_01904787.1| Phage integrase [Roseobacter sp. AzwK-3b]
 gi|149809721|gb|EDM69573.1| Phage integrase [Roseobacter sp. AzwK-3b]
          Length = 390

 Score = 86.6 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 48/325 (14%), Positives = 97/325 (29%), Gaps = 23/325 (7%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKS---AHW 84
           G  R I+L    E +   A    L          ++     +T    + ++ +      +
Sbjct: 51  GKMRVIKLGCFPELSAEDARQLCLKHKREISVGASADELAKSTKSITLDQFYEDHYLPWY 110

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFLTSMR 141
            +    S    + Y      + G      I+   ++      K     P S    +  +R
Sbjct: 111 KTYRRASANIVQMYRSNFHLRFGHRQLHSISQTDLKQLTNEMKQLGYAPGSVNTTVVVLR 170

Query: 142 VLFKWAVRQEYVAINPC--LSVERPKRKTEGIRPWTKEDMQQFKSFWSE--GSQPRLAFE 197
            + + A       I+                 R  ++++ Q+ +    +   +   LA  
Sbjct: 171 GMLRRADDWGLCRIHHSLHKPPNLLPDTKRHERFLSRDEAQKLQVVLRKRGATPVNLAIL 230

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLAMT------- 248
           FLLY+G R S+   A  + +  +    +    K G   TV L    + +L          
Sbjct: 231 FLLYTGARKSEVLNAEWRSINMDRCEWRIPLSKNGQPRTVILSQKAVAILQSARSYQQRH 290

Query: 249 ----PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATA 304
                      F N          +  W + +      +   H +R   A+   +AG + 
Sbjct: 291 YGKQAKQVSAVFANPQTLLPYHNIWETWKRVRIEADLPDLRLHDLRHSYASTLINAGVSI 350

Query: 305 HELMATYGWKTVDQAETYTKGADRI 329
           +E+    G   +   + Y   A   
Sbjct: 351 YEVQKLLGHSHIATTQRYAHLASER 375


>gi|146329800|ref|YP_001209933.1| integrase A2 [Dichelobacter nodosus VCS1703A]
 gi|146233270|gb|ABQ14248.1| integrase A2 [Dichelobacter nodosus VCS1703A]
          Length = 401

 Score = 86.6 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 46/281 (16%), Positives = 100/281 (35%), Gaps = 19/281 (6%)

Query: 54  STPKREYINSPRKKPTTLKWLISEYR--KSAHWGSLAVNSRISFESYFDQIIRKSGDFDY 111
              +  Y+   + +  T +++  E+   K   W +     +    +    +    G    
Sbjct: 96  KKKQAAYLAEEKTQKETFEFVAREWYQLKRPEWKNEKHA-QQVITTLEQFVFPFIGKKPI 154

Query: 112 RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
            +I+   +   +E     P +A +    +R +F +A++ + ++ NP +++ +  R T   
Sbjct: 155 SRISPPELLKVMEKLYDRPETASRVKQRIRAVFDYAIQTDRLSRNPAIALPKIFRSTIAK 214

Query: 172 RP-WTKEDMQQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ- 227
           +P     ++  F         P+  LA   L+ +  R  +      Q LQ N + I  + 
Sbjct: 215 QPSLPARELGIFFKQLDTYGNPKTALALRLLILTMTRSGELRFGQWQELQGNEWHIPAER 274

Query: 228 -KTGTIITVELPDGFMKL---LAMTPIGKETFFIN-NDKQKMNATQFSIWFKA--KATKA 280
            K      V L D  +++   L         +F+  N    ++ T  S+  K    A +A
Sbjct: 275 MKMNRPHIVPLSDWALEILDELRSLRRNNSPYFVTGNRNTPLSDTTLSLAMKRLGYAGRA 334

Query: 281 GVNKSAHGVRKFSATISADAGA-TAHELMATYGWKTVDQAE 320
                 HG R  ++T   ++G      +         +   
Sbjct: 335 ----VPHGFRATASTAMNESGLWNPDAIERQLAHTDENAVR 371


>gi|9971650|dbj|BAB12601.1| intI2 [Escherichia coli]
 gi|50262989|gb|AAT72891.1| IntI2 [Shigella sonnei]
 gi|296881202|gb|ADH82143.1| IntI2 [Klebsiella pneumoniae]
 gi|296881208|gb|ADH82148.1| IntI2 [Klebsiella pneumoniae]
 gi|296881214|gb|ADH82153.1| IntI2 [Escherichia coli]
          Length = 325

 Score = 86.6 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 40/297 (13%), Positives = 81/297 (27%), Gaps = 55/297 (18%)

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLT 138
           R        A+ +  ++  +  + I        + + ++ +R  + S  ++   AI    
Sbjct: 11  RTDMRQKGYALKTEKTYLHWIKRFILFHKKRHPQTMGSEEVRLFLSSLANSRHVAINTQK 70

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPK--RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196
                  +   +      P   ++     +        +  ++Q+        ++ ++ F
Sbjct: 71  IALNALAFLYNRFLQQ--PLGDIDYIPASKPRRLPSVISANEVQRILQVMD--TRNQVIF 126

Query: 197 EFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254
             L  +GLR ++  R  V+     N   ++   K G      LP   +  +         
Sbjct: 127 TLLYGAGLRINECLRLRVKDFDFDNGCITVHDGKGGKSRNSLLPTRLIPAIKXLIEQARL 186

Query: 255 F--------------FINNDKQKMNATQFSIWF--------------------------- 273
                          F  + K      Q +  F                           
Sbjct: 187 IQQDDNLQGVGPSLPFALDHKYPSAYRQAAWMFVFPSSTLCNHPYNGKLCRHHLHDSVAR 246

Query: 274 ---KAKATKAGV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              KA   KAG+     + H  R   AT    AG     +    G   V   + YT 
Sbjct: 247 KALKAAVQKAGIVSKRVTCHTFRHSFATHLLQAGRDIRTVQELLGHNDVKTTQIYTH 303


>gi|315918711|ref|ZP_07914951.1| tyrosine type site-specific recombinase [Bacteroides sp. D2]
 gi|313692586|gb|EFS29421.1| tyrosine type site-specific recombinase [Bacteroides sp. D2]
          Length = 405

 Score = 86.6 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 48/288 (16%), Positives = 102/288 (35%), Gaps = 44/288 (15%)

Query: 88  AVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRV 142
              +  ++ S    + +     D     I  + IR   +       T ++   +L ++R 
Sbjct: 130 KEGTAAAYRSTRLSLAKFLNGSDIRMSAIDLRFIRQYEDFLYNSGVTGNTVSYYLRNLRT 189

Query: 143 LFKWAVRQEY----------VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
           L+  AV   Y              P  +V+R           T++D+Q   +   E    
Sbjct: 190 LYNQAVTDGYHPHGEYPFAKAQTRPAKTVKR---------ALTRKDLQALANLGLEEMPE 240

Query: 193 -RLAFEFLLYS----GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
            + A +  L+S    G+   D        + N + +    K+  +I + +     +L+  
Sbjct: 241 LKFARDLYLFSFYAQGMAFVDIVLLRKSDIYNGVLTYSRHKSKQLIRIAVTPQMQELMDK 300

Query: 248 TPIGKETFF-------INNDKQ-KMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS 297
                E  F       ++  KQ +++  + + + K  A    +    + +  R   AT++
Sbjct: 301 YETEGEYVFPIISEKSLSEYKQYRLSLGRINRYLKKIAVMIDIAVPLTTYTARHTWATLA 360

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345
            D GA    + A  G  + +    Y K  D  +L      +++S+V +
Sbjct: 361 RDYGAPVSVISAGLGHTSEEMTRIYLKEFDVSQL-----DKVNSMVTN 403


>gi|307694467|ref|ZP_07636704.1| phage integrase, N-terminal SAM domain protein [Ruminococcaceae
           bacterium D16]
          Length = 327

 Score = 86.6 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 33/256 (12%), Positives = 78/256 (30%), Gaps = 16/256 (6%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----SRKHTPSSAIQFLTSMRVL 143
           +  +   +      ++    D + ++I T+ +R  +     SRK +  +       +   
Sbjct: 66  SEKTLSYYRQTIVSMLSGI-DKEPQEIVTEDLRKYLTEYQTSRKSSKVTIDNIRRILSSY 124

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203
           F W   ++Y+  +P   + + K        +T E ++  +       +     + L  SG
Sbjct: 125 FSWLEDEDYIVKSPVRRIHKVKTAKVIKETYTDEALEIMRDNCC-NVRDLAMIDLLASSG 183

Query: 204 LRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG-----FMKLLAMTPIGKETFF-- 256
           +R  +        +  N         G+   +   D          L          F  
Sbjct: 184 MRVGEMIALNRDDINFNERECVVFGKGSKERIVYFDARTKIHLQNYLESRTDTCSALFVS 243

Query: 257 INNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKT 315
           +     ++         +    +  + +   H  R+  AT + D G    ++    G + 
Sbjct: 244 LTAPNDRLQIGGVERRLRELGKRLNLPRVHPHKFRRTLATSAIDKGMPIEQVQQLLGHQK 303

Query: 316 VDQAETY--TKGADRI 329
           +D    Y   K  +  
Sbjct: 304 IDTTMHYAMVKQQNVK 319


>gi|320449554|ref|YP_004201650.1| DNA integration/recombination/inversion protein [Thermus
           scotoductus SA-01]
 gi|320149724|gb|ADW21102.1| DNA integration/recombination/inversion protein [Thermus
           scotoductus SA-01]
          Length = 391

 Score = 86.6 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 48/279 (17%), Positives = 93/279 (33%), Gaps = 34/279 (12%)

Query: 102 IIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL 159
           +    G    +++    IR  V+    ++ P +  + L  ++ LF+ AV  E V  NP  
Sbjct: 111 LPDPLGRMPLQRVGPAQIRGVVDGLVGRYAPRTVRKVLGHLKALFREAVHLELVPRNPAE 170

Query: 160 SVE-RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL--YSGLRCSDSCRAGVQH 216
            V  R + + +  R    E++ +       G    +A    L   +GLR  ++     + 
Sbjct: 171 GVRLRLREEEKVARALEPEEVIRLLEEAERGRSREMALLLWLLLSTGLRRGEALALQWRD 230

Query: 217 LQ---------------NNIFSIKTQKTGTIITVELPDGFMK----------LLAMTPIG 251
           L                +   +  T KT T   V      +           L  + P  
Sbjct: 231 LDLDRGEVRVWRAWTKVDGRGAFTTPKTSTARRVVPLPRDLLLRLRAYKEEFLAKLAPEE 290

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMAT 310
            E  F+    +  +   F+ + +  A +AG+ +   H +R   AT++   G     +   
Sbjct: 291 VEELFLFGGDRPFDPDAFNHYLRRLAERAGLGRVRVHDLRHTWATLALSRGVPLEVVSER 350

Query: 311 YGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVVDSDDP 348
            G  +       Y    +  R G      +  ++    P
Sbjct: 351 LGHASPTITLNVYRHLLEEERRGY--VLELGELLGGPRP 387


>gi|319788796|ref|YP_004090111.1| integrase family protein [Ruminococcus albus 7]
 gi|315450663|gb|ADU24225.1| integrase family protein [Ruminococcus albus 7]
          Length = 410

 Score = 86.6 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 54/305 (17%), Positives = 95/305 (31%), Gaps = 31/305 (10%)

Query: 48  MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG 107
           +  L G  PKR+Y    R  P T   +I +Y         +  +  +             
Sbjct: 91  LDILNGKEPKRKYTTHKRDCPITYLNVIRKYETFMRNDQKSDGTVRTRSGRITVFFAFLE 150

Query: 108 DF---DYRKITTKHIRSGVESRKHTPSS--AIQFLTSMRVLFKWAVRQEYVAINPC---L 159
           +        IT +     V S     SS      L ++R  F +      ++ +P     
Sbjct: 151 ECKCTSLEGITPELFARFVSSLNDRYSSQGKASILYTLRNFFSYDEFSGALSFDPIPFLT 210

Query: 160 SVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ----PRLAFEFLLYSGLRCSDSCRAGVQ 215
            +   K +      +T E++++  +     +       L        G R SD     + 
Sbjct: 211 GIHSGKHE-RLPSFYTAEEVRRILNAVDRNTPWGKTVYLMMLLASVYGFRSSDIKAMVLD 269

Query: 216 HL--QNNIFSIKTQKTGTIITVELPDG-FMKLLA-----MTPIGKETFFINNDKQKMNAT 267
           ++  +N   +I   KT   I++ + D     LL               FI    +   A 
Sbjct: 270 NINWKNRTINITQYKTHKEISLPMTDEILFALLDYIKNVRPESDCSNVFIRLR-KPYIAY 328

Query: 268 QFSIWFKAKA----TKAGVN-----KSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
             +  F  K       AGV+        H +R   AT    +G   +E+    G  +   
Sbjct: 329 SMNDHFGDKILPFFEIAGVDTKGKHHGLHSLRHSLATNLLVSGTPINEIAVILGHTSAAS 388

Query: 319 AETYT 323
            +TY 
Sbjct: 389 TKTYV 393


>gi|300872295|gb|ADK38975.1| IntI4 [Vibrio sp. V95(2010)]
          Length = 296

 Score = 86.6 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 41/288 (14%), Positives = 85/288 (29%), Gaps = 57/288 (19%)

Query: 93  ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEY 152
            ++  +  + I          +  K +   +         A +  +       +  ++  
Sbjct: 7   RAYLHWITRYIHFHNKKHPSLMGDKEVEEFLTYLAVQGKVATKTQSLALNSLSFLYKE-- 64

Query: 153 VAINP-CLSVE--RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDS 209
           +   P  L +   R + + +     T++++++         + +L  + L  SGLR  + 
Sbjct: 65  ILKTPLSLEIRFQRSQLERKLPVVLTRDEIRRLLEIVDP--KHQLPIKLLYGSGLRLMEC 122

Query: 210 CRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLAMTPIGKETFFINN-------- 259
            R  VQ +  +  +I+    K G   TV L       L       + ++  +        
Sbjct: 123 MRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHLKEQIALAKRYYDRDLHQKNYGG 182

Query: 260 --------------------------------------DKQKMNATQFSIWFKAKATKAG 281
                                                  +  MN T      +  A +AG
Sbjct: 183 VWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVMRRHHMNETVLQKAVRRSAQEAG 242

Query: 282 VNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           + K+   H +R   AT   + GA    +    G   V   + YT   D
Sbjct: 243 IEKTVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHVLD 290


>gi|167838354|ref|ZP_02465213.1| putative bacteriophage integrase [Burkholderia thailandensis
           MSMB43]
          Length = 284

 Score = 86.6 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 42/267 (15%), Positives = 87/267 (32%), Gaps = 22/267 (8%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMRVLF 144
              S+   +    ++       D RK+    +R  V +R       S+  + L  +    
Sbjct: 15  KHRSKERDQYSLKRLQPHFSGRDLRKLKRGDVRRYVSARLADGVCESTVKRELRLLSAAI 74

Query: 145 KWAV-RQEYVA-INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA--FEFLL 200
            +     +Y    NP  S+     ++        E ++   +  +   QP L       L
Sbjct: 75  NFVRTEHDYPELANPVQSLGLDGGESRVRWISRSEAVELILAAGAAARQPHLRNFVRLAL 134

Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQ----KTGTIITVELPDGFMKLLAMTP------- 249
            +G R ++        +       + +    K G    V L  G +  L           
Sbjct: 135 STGCRKNELLALEWHRVDFERSHFRLECEHTKNGKRRLVPLNSGALSALRDQRDWVARHC 194

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELM 308
            G E  F ++  ++++       F A   +AG+ +   H +R   A+     G + + + 
Sbjct: 195 AGSEWVFASSSGRRVS--NLQKGFVAACARAGIEDFRIHDLRHTFASWLVMEGVSLYVVK 252

Query: 309 ATYGWKTVDQAETYTK-GADRIRLGIK 334
              G  ++   E Y     D  R+ ++
Sbjct: 253 DLLGHSSITVTERYAHLSPDHGRVAVQ 279


>gi|23010938|ref|ZP_00051459.1| COG0582: Integrase [Magnetospirillum magnetotacticum MS-1]
          Length = 336

 Score = 86.6 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 42/300 (14%), Positives = 86/300 (28%), Gaps = 66/300 (22%)

Query: 93  ISFESYFDQIIRKSGDFDYRKITTKHIRSG-VESRKHTPSSAIQFLTSMRVLFKWAVRQE 151
              ++    I+R+ G      IT + +     +  +  P+ A + +  +  +F  A++  
Sbjct: 4   HDRQTLDRHILRRFGGQKVADITHRQVEIYHRDRSQDAPTQANREIALLSKMFALAIKWG 63

Query: 152 YVAINPCLSVERPKRKTEGIRPWTKEDMQQFK---SFWSEGSQPRLA--FEFLLYSGLRC 206
           Y   NP   +ER        R  + E++       +  +  +    A    FLL +G R 
Sbjct: 64  YRPDNPAKGIERNPENKRE-RYLSTEEISHLLDAMNKHTVAASRHCANLIRFLLLTGARR 122

Query: 207 SDSCRAGVQHLQNNIFSI------KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINND 260
            ++  A    +               QK    + +  P   + +        E    N +
Sbjct: 123 GETMSATWDQVDLETGVWIKPSSHTKQKKTHRVPLSAPALALLVDMKAKADAEAKKANEE 182

Query: 261 KQKM-----------NATQFSIWFKAKATK------------------------------ 279
             K            +  ++    + +AT                               
Sbjct: 183 PSKFLFPGRGKDHITSPKKYWEMIRERATVSLWASKPETTAGKLVAELTIDDLPEHRKVV 242

Query: 280 -----------AGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
                      AG+ + + H +R   A+I A +G +   +    G         Y    D
Sbjct: 243 AWAQIKGVELPAGITDVNVHDLRHSYASILASSGLSLPIIGQLLGHTQTQTTARYAHLFD 302


>gi|293409503|ref|ZP_06653079.1| conserved hypothetical protein [Escherichia coli B354]
 gi|291469971|gb|EFF12455.1| conserved hypothetical protein [Escherichia coli B354]
          Length = 380

 Score = 86.6 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 60/362 (16%), Positives = 111/362 (30%), Gaps = 49/362 (13%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTG---------- 53
            + LP    K   R GK+   ++     R       E+        A T           
Sbjct: 9   KISLPNLYCKLDKRTGKVYLQYKHPLSGRFHSLGTDENEAKQVATEANTIIAEQRTRQIL 68

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKSAH----WGSLAVNSRISFESYFDQIIRKSGDF 109
           S  +R      R+   T+   + +Y            L  NS               G  
Sbjct: 69  SVNERLERMKGRRSDITVTEWLDKYISIQEDRLQHNELRPNSYRQKGKPIRLFREHCGMQ 128

Query: 110 DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL----FKWAVRQEYVA--INPCLSVER 163
             + IT   I   +++ K       +    +R++    FK A    +V    NP  + ++
Sbjct: 129 HLKDITALDIAEIIDAVKAEGH--NRMAQVVRMVLIDVFKEAQHAGHVPPGFNPAQATKQ 186

Query: 164 PKRKTEGIRPWTKEDMQQ-FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222
           P+ +    R  +  + Q  F+S        +      L +G R  + C      + +++ 
Sbjct: 187 PRNRVNRQR-LSLPEWQAIFESVSRRQPYLKCGMLLALVTGQRLGEICNLKFSDIWDDML 245

Query: 223 SIKTQKTGTIITVELP---DGFMKLLAMTPIGKETFFIN-------------NDKQKMNA 266
            I  +KTG+ + + L    D     L           ++             N   +++A
Sbjct: 246 HITQEKTGSKLAIPLNLKCDALNITLREVISQCRDAVVSKYLVHYRHTTSQANRGDQVSA 305

Query: 267 TQFSIWFKAKATKAGVNK------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
              +  FK    K G+        + H  R  S  +  + G    +L    G K+    +
Sbjct: 306 NTLTTAFKKAREKCGIKWEQGTAPTFHEQRSLSERLYREQGLDTQKL---LGHKSRKMTD 362

Query: 321 TY 322
            Y
Sbjct: 363 RY 364


>gi|149908526|ref|ZP_01897188.1| DNA integration/recombination/invertion protein [Moritella sp.
           PE36]
 gi|149808360|gb|EDM68297.1| DNA integration/recombination/invertion protein [Moritella sp.
           PE36]
          Length = 236

 Score = 86.6 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 63/216 (29%), Gaps = 20/216 (9%)

Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKE 177
               +   K +P +     T +R LF    R   +   NP   V   K K   +     E
Sbjct: 16  AYRKLRLEKVSPKTVNNEQTYVRALFNELTRLGEWTKGNPIEGVRMLKHKQSEMGFLQPE 75

Query: 178 DMQQFKSFWSEGSQPRLAF---EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234
            M        E S  + A    +  L +G R  ++     +H+  NI +  + K     +
Sbjct: 76  QMTSLLETL-ENSHNKDALIITKICLSTGCRWGEAANLRSEHVVKNIVTFVSTKGNKPRS 134

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA----HGVR 290
           V +       +                +    +     F+     A +   A    H +R
Sbjct: 135 VPISPALSNTMPK-----------RTGKLFPKSCNDSTFRTAIKNAKIKLPAGQMTHVLR 183

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
              A+     G     L    G  ++     Y+  A
Sbjct: 184 HTFASHVMINGGIFLVLQRILGHASIVDTMKYSHFA 219


>gi|52141019|ref|YP_085810.1| integrase/recombinase [Bacillus cereus E33L]
 gi|51974488|gb|AAU16038.1| integrase/recombinase [Bacillus cereus E33L]
          Length = 322

 Score = 86.6 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 39/289 (13%), Positives = 91/289 (31%), Gaps = 26/289 (8%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           T+K  +S   +      L   +   +E +    +  +G    +++T +HI   + S   +
Sbjct: 31  TIKKALSTVIRQMRATGLRDRTISDYELHIGHFMSVTGAEFLQELTVEHIYLWLSSMNVS 90

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-- 187
             + +  L  ++          ++ IN   S++  K  +      T  ++    S     
Sbjct: 91  NQTKLTRLKCLKAFLGRCFDNGWIEINFWKSIK-IKVDSPVKEGATDREINLLLSILDLT 149

Query: 188 --EGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQ--KTGTIITVELPDGF 241
                +   +   +  +G+R     +   +H+  +N +  I     K    I +   D  
Sbjct: 150 RFIELRDAASVLLMYQTGIRVGTLSQLEHKHVNLENKVLRIDGGIIKNHESIHLPFDDVL 209

Query: 242 MKLLAMT-----------PIGKETFFINNDKQKM----NATQFSIWFKAKATKAGV-NKS 285
            ++L               I  +  FI  +  ++         +      +   G+ N +
Sbjct: 210 ARVLGALMKQNDIIRKECHIKNDYLFITKNGGRIATSPTNNNITKRLSKHSKDYGLKNIN 269

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIK 334
            H +R+  A      GA    +    G   +     Y    D+  +   
Sbjct: 270 PHALRRGFAKNLLKKGANIALISKALGHSDLAVTTRYLH-LDKEEVAES 317


>gi|323693378|ref|ZP_08107593.1| phage integrase family Site-specific recombinase [Clostridium
           symbiosum WAL-14673]
 gi|323502583|gb|EGB18430.1| phage integrase family Site-specific recombinase [Clostridium
           symbiosum WAL-14673]
          Length = 283

 Score = 86.6 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 41/258 (15%), Positives = 87/258 (33%), Gaps = 14/258 (5%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-FDYRKITTKHIRSGVESRKHTPSSA 133
           + +++ +      +  +   +    +       +     K  T   +  +  R +  SS 
Sbjct: 12  VEQFKWNLMEQERSEATIEKYIRDINAFFEWLPEGKRVDKPVTIAYKQSLLERGYASSSI 71

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-GSQP 192
              + ++   F +        I P L ++     +E  R  TKE+ ++      E   + 
Sbjct: 72  NSMVAALNSFFSY-SEWGDCRIRP-LRIQAQTMVSEE-RKLTKEEYKRLLHAAKEKNERL 128

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL----AMT 248
            L  + +   GLR S+     V+ +      +     G + TV LP     +L       
Sbjct: 129 YLVMQSICSVGLRVSELKFLTVEAVHRGRTVVN--NKGKMRTVVLPPKLCLILKQYCRRQ 186

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGATAH 305
            +   + F++   + ++ +      K  A  AGV       H +R   A++  +      
Sbjct: 187 RVTGGSIFVSRTGRPLDRSNIWSAMKELAKAAGVAADKVFPHNLRHLFASVYYERFQDIV 246

Query: 306 ELMATYGWKTVDQAETYT 323
           +L    G   V+    YT
Sbjct: 247 KLADILGHSNVNTTRIYT 264


>gi|268609724|ref|ZP_06143451.1| phage-specific recombinase/integrase XerD [Ruminococcus
           flavefaciens FD-1]
          Length = 342

 Score = 86.6 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 48/312 (15%), Positives = 101/312 (32%), Gaps = 45/312 (14%)

Query: 68  PTTLKWLISEYRKS--AHWGSLAVNSRISFESYFDQIIR--------KSGDFDYRKITTK 117
             T+ + ++ + K       +L+ N+  ++   F  ++         KS       I  +
Sbjct: 7   KHTISYYMTSFFKKYLPGQKNLSPNTIRAYADAFKLLLIYCEEEKGIKSDRLKLENIDRE 66

Query: 118 HIRSGVES----RKHTPSSAIQFLTSMRVLFKWAVRQEYVAIN-----PCLSVERPKRKT 168
            +   ++     R    ++  Q L ++    ++   Q+    N       + ++  K K 
Sbjct: 67  LVSGFLDWLEEIRGCKTTTRNQRLIALHSFCRYV--QKISPENMDNLQSVIQIDYKKSKK 124

Query: 169 EGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
             +   T++ M+   +     +    + ++    L  +G R  + C   ++ ++    ++
Sbjct: 125 AIVPYLTEKQMKLLLAQPDGNTWQLFRDKVMLAVLYDTGARVQELCDLRIKDVRLESPAV 184

Query: 225 KT--QKTGTIITVELPDGFMKLL----------AMTPIGKETFFINNDKQKMNATQFSIW 272
            T   K   +  V +  G  KLL          A    G    F+N   QK++    S  
Sbjct: 185 ITLTGKGNKVRQVPIMSGTQKLLKIYLEKHKGNAGISRGDNPLFVNQRGQKLSRWGVSHI 244

Query: 273 FKAKATKAGVNK-------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK- 324
                  A           +AH  R   A     AG     +    G       E Y K 
Sbjct: 245 IDKYVDMAKEKGLDVDFPITAHVFRHSKAVHMVHAGINLIYIRDFLGHVDWATTEIYAKI 304

Query: 325 GADRIRLGIKNS 336
             +  R  I+ +
Sbjct: 305 DTETKRKAIEAA 316


>gi|212635006|ref|YP_002311531.1| integrase [Shewanella piezotolerans WP3]
 gi|212556490|gb|ACJ28944.1| Integrase [Shewanella piezotolerans WP3]
          Length = 404

 Score = 86.6 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 56/307 (18%), Positives = 99/307 (32%), Gaps = 39/307 (12%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNS--RISFESYFDQIIRKSGD 108
             G  P      + +    T+  L +++    +   L   +     +      I    G 
Sbjct: 76  RDGLDPLLAKQRAEQVAIKTVDDLFADWHI-GNTKRLKHANIPERIYRK---DIAPHIGS 131

Query: 109 FDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV---ER 163
           F+   +T + IR  + +   T  P+ A   L   + LF   ++ + +  NP  +    + 
Sbjct: 132 FNVDSVTARDIREVLTTIAATGRPAIANDALMYCKQLFNHGIKLDLLGANPASAFSVSDA 191

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQ-----PRLAFEFLLYSGLRCSDSCRAGVQHLQ 218
              +    R  T E++ QF     + S        LA   L+  G+R S+   A  +   
Sbjct: 192 GGVEKSKDRALTIEELTQFFQTAGKNSDSFSRDNYLASALLVTLGVRKSELAEAPWKEFD 251

Query: 219 NNIFSIK----TQKTGTIITVELPDGFMKLLAMTPI---GKETFFINNDKQK---MNATQ 268
                        K+G  IT+ LP+  M  +    +   G +  F +    K   M A  
Sbjct: 252 LEEKVWNLPKERSKSGVGITIPLPEIVMDWIQELKVRACGSDYVFPSRRTSKNPHMGADT 311

Query: 269 FSIWF-KAKATKAGVNK------------SAHGVRKFSATISADAGATAHELMATYGWKT 315
            +    K    +AG  K            + H +R+   T+ A  G   H        K 
Sbjct: 312 LNRAITKLFGHEAGKKKQPPNLMGGMEHFTVHDLRRTCRTLLAKQGTPGHVAERCLNHKL 371

Query: 316 VDQAETY 322
                 Y
Sbjct: 372 KGVEGIY 378


>gi|209516758|ref|ZP_03265610.1| integrase family protein [Burkholderia sp. H160]
 gi|209502875|gb|EEA02879.1| integrase family protein [Burkholderia sp. H160]
          Length = 336

 Score = 86.6 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 46/304 (15%), Positives = 102/304 (33%), Gaps = 42/304 (13%)

Query: 85  GSLAVNSRISFESYFDQI--------IRKSGDFDYRKITTKHIRSGVESRKHTPS----S 132
            +L+ N++ S+   F  +         + +       ++ + +++ +   + T      +
Sbjct: 23  RNLSRNTQKSYRDTFRLLLPFLVRQARKSADRLTIDDVSDQRVKAFLADIEQTRHCGVVT 82

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT---KEDMQQFKSFWSEG 189
             Q L ++R L  +  +     +  C  +     K       T   K +M +  +     
Sbjct: 83  RNQRLAALRSLANFIGQNSPEHLQWCGQIRVLPFKKAPRSTITYLEKPEMDELLAAAQGP 142

Query: 190 S----QPRLAFEFLLYSGLRCSDSCRAGVQHL------QNNIFSIKTQKTGTIITVELPD 239
           S    +      FL  +G R  ++ +  +  L      + ++ S+  +  G  +  + P 
Sbjct: 143 SAQQRRDHALLLFLYNTGARADEAAQVTIADLHVALVPKRDLSSVTIRGKGNKLR-QCPL 201

Query: 240 GFMKLLAMTPI-----GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--------SA 286
               +  + P+       E  F+N     +         +    KA V          S 
Sbjct: 202 WLQTIAEIVPLIDGRGSTEHVFLNRRAVPITRFGIHTLVERYVQKAAVKVPSLTLKRVSP 261

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG--ADRIR-LGIKNSRRISSVV 343
           H +R  + T    AG   + + A  G  ++D    Y +   A + R L +    R +S +
Sbjct: 262 HTLRHTAGTHLLRAGVDINTIRAWLGHVSIDTTNIYAETDLAMKARALALCEVSRTASAL 321

Query: 344 DSDD 347
              D
Sbjct: 322 HWRD 325


>gi|260590922|ref|ZP_05856380.1| integrase [Prevotella veroralis F0319]
 gi|260536787|gb|EEX19404.1| integrase [Prevotella veroralis F0319]
          Length = 434

 Score = 86.6 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 52/284 (18%), Positives = 98/284 (34%), Gaps = 29/284 (10%)

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLT 138
           R +  + +L+ + R   E   D+ ++        +   +  R  ++ R    ++   +L 
Sbjct: 123 RAAGTYLNLSHSERNLREFVEDKGVQDIPIGAITEDLFEEYRFFLKKRGLKGTTINNYLC 182

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WSEGSQPRLA 195
            +  L   AV Q  +  NP    +  K + + IR   K ++ +  +     SE    RL 
Sbjct: 183 WLSRLMFRAVSQRIIRYNPFEHAKYEKEEKK-IRFLQKSEVAKLATMKMNDSEAELARLM 241

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQ---NNIFSIK--TQKTGTIITVELPDGFMKLLAMTPI 250
           F F   +GL  +D      +H+Q   +    I+   QKT     V L      ++     
Sbjct: 242 FVFSCLTGLAIADMEHLLYKHIQTAADGRKYIRKERQKTKGEFIVPLHPIAEAIINYCRN 301

Query: 251 GKETFFINNDKQKMNATQFSIWFKAKA-------------TKAGVN--KSAHGVRKFSAT 295
            +E    N   Q +     S+ F                    G+    S H  R    T
Sbjct: 302 EQEG---NKAHQAIKEKGDSLVFPRDCSRSVMGKNLCIVGKACGIKERLSFHMARHTFGT 358

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
           +S  AG     +    G  ++   + Y +  D+     ++  R+
Sbjct: 359 MSLSAGIPIESIAKMMGHASISSTQIYAQVTDKK--ISEDMDRL 400


>gi|2618954|gb|AAC48884.1| integrase [Phage 21]
 gi|2618966|gb|AAC48892.1| integrase [Phage 21]
          Length = 356

 Score = 86.6 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 51/302 (16%), Positives = 95/302 (31%), Gaps = 39/302 (12%)

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKSAH----WGSLAVNSRISFESYFDQIIRKSGDF 109
           S  +R      R+   T+   + +Y            L  NS               G  
Sbjct: 45  SVNERLERMKGRRSDITVTEWLDKYISIQEDRLQHNELRPNSYRQKGKPIRLFREHCGMQ 104

Query: 110 DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL----FKWAVRQEYVA--INPCLSVER 163
             + IT   I   +++ K       +    +R++    FK A    +V    NP  + ++
Sbjct: 105 HLKDITALDIAEIIDAVKAEGH--NRMAQVVRMVLIDVFKEAQHAGHVPPGFNPAQATKQ 162

Query: 164 PKRKTEGIRPWTKEDMQQ-FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222
           P+ +    R  +  + Q  F S        +      L +G R  D C      + +++ 
Sbjct: 163 PRNRVNRQR-LSLPEWQAIFDSVSRRQPYLKCGMLLALVTGQRLGDICNLKFSDIWDDML 221

Query: 223 SIKTQKTGTIITVELP---DGFMKLLAMTPIGKETFFIN-------------NDKQKMNA 266
            I  +KTG+ + + L    D     L           ++             N   +++A
Sbjct: 222 HITQEKTGSKLAIPLNLKCDALNITLREVISQCRDAVVSKYLVHYRHTTSQANRGDQVSA 281

Query: 267 TQFSIWFKAKATKAGVNK------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
              +  FK    K G+        + H  R  S  +  + G    +L    G K+    +
Sbjct: 282 NTLTTAFKKAREKCGIKWEQGTAPTFHEQRSLSERLYREQGLDTQKL---LGHKSRKMTD 338

Query: 321 TY 322
            Y
Sbjct: 339 RY 340


>gi|320156900|ref|YP_004189279.1| integrase [Vibrio vulnificus MO6-24/O]
 gi|319932212|gb|ADV87076.1| integrase [Vibrio vulnificus MO6-24/O]
          Length = 444

 Score = 86.6 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 49/317 (15%), Positives = 96/317 (30%), Gaps = 37/317 (11%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNS---RISFESYFDQIIRKSG 107
           LT        + S   +      L+  + +S    ++   +        S+    + K G
Sbjct: 116 LTNLEETEPSVKSISAEVVPFTQLLERFLESKKKRNVRQLTIHQLKQRISHCINFLEKEG 175

Query: 108 --DFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV---- 161
                            + S   +  +   + ++ +  FKW   ++Y+  NP   +    
Sbjct: 176 INRNTVSSSDLDSYIDLLYSEGRSTKTNKDYFSASKQFFKWLKSKKYIPNNPAQDLNPQF 235

Query: 162 ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE----FLLYSGLRCSDSCRAGVQHL 217
           +  K  +E    WT +++          +Q  L F+      L+ GLR  ++C+  +Q +
Sbjct: 236 KSKKHVSEQRERWTTDELTLLIKS-PAFTQQSLDFQWITKLQLFHGLRTGEACQPYIQDI 294

Query: 218 --QNNIFSIKTQ--------KTGTIIT-VELPDGFMK-----LLAMTPIGKETFF----- 256
              + I   +          K    +  V L             +    G    F     
Sbjct: 295 VVDDEIPYFRVTDQSKDQHLKNEHAVRNVPLHPAIRDDFVIFCESRRHKGNAPLFDYSPL 354

Query: 257 -INNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKT 315
             + D  K   TQF          AG   +A+G+R     +  +     H +    G   
Sbjct: 355 GPDKDWTKTYRTQFGKLQTKLGMLAGKRPTAYGLRHTFIDVLKEQDVPEHSVAEVVGHNN 414

Query: 316 VDQA-ETYTKGADRIRL 331
            +     Y K     +L
Sbjct: 415 PNMTFGRYGKKHKLEKL 431


>gi|253316877|ref|ZP_04840090.1| integrase [Staphylococcus aureus subsp. aureus str. CF-Marseille]
          Length = 349

 Score = 86.6 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 45/291 (15%), Positives = 94/291 (32%), Gaps = 39/291 (13%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFES-YFDQIIRKSGDFDYRKITT---KHIRSGVES 125
           T  ++   Y +++    L   ++   ++ Y      K G     KIT    +  R  +  
Sbjct: 59  TFDYVFHHYLENS---DLRPKTKRRKQNEYHKHFKAKFGHIKMNKITQNQCQEFRKYLIE 115

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
              + +SA    +  +V+  +A +   +  +P +S++   R     +   +E+ ++ +  
Sbjct: 116 NVASTNSARTIWSGFKVVINYAKKYFGLRTDPTISIKPIPRVKPKPKFMMREEFEE-RIK 174

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH---------------LQNNIFSIKTQKTG 230
             E    R  F  + Y+GLR  ++                      + N     + +   
Sbjct: 175 DIEEQDYRELFTLMFYTGLRIGEAMALVWTDYNKYKKEISINKTMDISNRTIYPRPKTDS 234

Query: 231 TIITVELPD----------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280
           +   V LP              K L      +  F        M    +S   K    KA
Sbjct: 235 SEDIVPLPKFINTMLTERHQREKELNKYFDERSYFIF----GGMAPKHYSHVQKKF-QKA 289

Query: 281 GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIR 330
               + H +R   A+  A+ G     L +      + +   TY+    + +
Sbjct: 290 FPPYNIHALRHSYASYLANNGVDIFVLQSLMRHAQITETMGTYSHLYTQKK 340


>gi|169628905|ref|YP_001702554.1| Phage integrase [Mycobacterium abscessus ATCC 19977]
 gi|169240872|emb|CAM61900.1| Phage integrase [Mycobacterium abscessus]
          Length = 389

 Score = 86.6 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 51/342 (14%), Positives = 104/342 (30%), Gaps = 40/342 (11%)

Query: 13  KERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           + R   G      R+G           +     A  + +   + +R   ++      TL 
Sbjct: 30  RYRDSDGVTRIVERRGP------VDDFDKHGKLAEDALIEALSDRRLPADTDTIGYDTLV 83

Query: 73  -WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHT 129
             L+ ++         +  +  +++   D++    G     +     + + + S    H 
Sbjct: 84  MALVDQHIGRLSDDGRSPATVATYKFASDKLRNFLGGVRVSEAHAARMDAALRSMRTAHG 143

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT--EGIRPWTKEDMQQFKSF-- 185
            + A Q  T ++   + AV    +  NP   V+  + KT  +G    + + ++   +   
Sbjct: 144 TTMARQAKTILQGGLQLAVMANVIPANPVRDVQSLRSKTRPKGATALSADQLRTLLAEIR 203

Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------------- 229
              +  G+        L+ +GLR S+           N  ++                  
Sbjct: 204 ASEYCAGNDLADPLIILMATGLRRSELLALRWSDFDANAGTLTVTGKLVRATGAGLQRID 263

Query: 230 -----GTIITVELPDGFMKLLAMTPIGK-----ETFFINNDKQKMNATQFSIWFKAKATK 279
                  + TV LP   +  L               F +      +   F   ++A    
Sbjct: 264 EAKTAAGMRTVALPSFAVTALRHRQGRDYVGQQLMIFPSTAGTWRDPNNFGKQWRAVRDD 323

Query: 280 AGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
            GV   + H  RK  AT+  D G +A       G   V   +
Sbjct: 324 LGVPGVTTHSFRKTMATLIDDNGLSARVGADQLGHAKVSMTQ 365


>gi|2618969|gb|AAC48894.1| integrase [Phage 21]
          Length = 356

 Score = 86.6 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 52/302 (17%), Positives = 96/302 (31%), Gaps = 39/302 (12%)

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKSAH----WGSLAVNSRISFESYFDQIIRKSGDF 109
           S  +R      R+   T+   + +Y            L  NS               G  
Sbjct: 45  SVNERLERMKGRRSDITVTEWLDKYNSIQEDRLQHNELRPNSYRQKGKPIRLFREHCGMQ 104

Query: 110 DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL----FKWAVRQEYVA--INPCLSVER 163
             + IT   I   +++ K       +    +R++    FK A    +V    NP  + ++
Sbjct: 105 HLKDITALDIAEIIDAVKAEGH--NRMAQVVRMVLIDVFKEAQHAGHVPPGFNPAQATKQ 162

Query: 164 PKRKTEGIRPWTKEDMQQ-FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222
           P+ +    R  +  + Q  F S        +      L +G R SD C      + +++ 
Sbjct: 163 PRNRVNRQR-LSLPEWQAIFDSVSRRQPYLKCGMLLALVTGQRLSDICNLKFSDIWDDML 221

Query: 223 SIKTQKTGTIITVELP---DGFMKLLAMTPIGKETFFIN-------------NDKQKMNA 266
            I  +KTG+ + + L    D     L           ++             N   +++A
Sbjct: 222 HITQEKTGSKLAIPLNLKCDALNITLREVISQCRDAVVSKYLVHYRHTTSQANRGDQVSA 281

Query: 267 TQFSIWFKAKATKAGVNK------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
              +  FK    K G+        + H  R  S  +  + G    +L    G K+    +
Sbjct: 282 NTLTTAFKKAREKCGIKWEQGTAPTFHEQRSLSERLYREQGLDTQKL---LGHKSRKMTD 338

Query: 321 TY 322
            Y
Sbjct: 339 RY 340


>gi|53714807|ref|YP_100799.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|52217672|dbj|BAD50265.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
          Length = 403

 Score = 86.6 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 49/299 (16%), Positives = 99/299 (33%), Gaps = 51/299 (17%)

Query: 83  HWGS--LAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESRKHTPSSAIQ 135
            W    +   +  +++S +  + +  G  + +     H      R  +     T ++   
Sbjct: 115 EWKKSIMKNGTAAAYQSTYASLAKYIGKKEVKISQVNHRFVTCYRDFLSKNGATENTIGY 174

Query: 136 FLTSMRVLFKWAVRQEYVA----------INPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +L + R L+  AV+   V             PC +V+R            +E M +  + 
Sbjct: 175 YLRNFRALYNLAVKDGLVPPCDYPFKEICTKPCKTVKR---------ALDREQMVKL-AC 224

Query: 186 WSEGSQPRLAFEFLLYS------GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239
            S  S   L     L+       G+   D      +++  N    +  K+  +I + +  
Sbjct: 225 LSLHSDAELKRSLDLFLFGFYAQGMAFVDIAYLKWKNISGNRIIYRRHKSKQLIQIVITP 284

Query: 240 GFMKLLA----MTPIGKETFF------INNDKQKMNATQFSIW-FKAKATKAGVN--KSA 286
               ++      T   +E  F       N   Q   A   +    K  + K  ++   + 
Sbjct: 285 QIKSIIDEHGNNTNNAEEYVFSVIKNNANEYTQYRTALGRTNRHLKIISAKLKIDPPLTT 344

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345
           +  R   AT++ + GA    + A  G    +    Y K  D   L      RI+ +V++
Sbjct: 345 YTARHTWATLAREYGAPVSAISAGLGHTKEEMTLVYLKELDLAPL-----HRINKMVNN 398


>gi|71899889|ref|ZP_00682037.1| Phage integrase [Xylella fastidiosa Ann-1]
 gi|71730329|gb|EAO32412.1| Phage integrase [Xylella fastidiosa Ann-1]
          Length = 353

 Score = 86.6 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 35/237 (14%), Positives = 76/237 (32%), Gaps = 19/237 (8%)

Query: 8   PPFVTKERTRHGKIIY---YF--RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62
           P  + + R      ++   Y+  R   G R+ +P   +        + L       E   
Sbjct: 12  PKMLRRTRVLKSGKVWESFYYNGRTTEGGRVEIPLGGDLNEAKRKWAELECCKAPVETEV 71

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122
                   L ++   Y +     + A  +R   +S    + +  GD +   +T + +   
Sbjct: 72  --------LGFIFDRYLREVA-PTKARATRYQIKSCITTLRKVFGDVNIHTVTPQQLAQY 122

Query: 123 VESRKHT-PSSAIQFLTSMRVLFKWAVRQEYVAI-NPCLSVERPKRKTEGIRPWTKEDMQ 180
            + R  T P  A + L+    ++  A    Y    N    + + K K             
Sbjct: 123 RDKRARTAPVLANRELSVFSSVWTMAREWGYTNKENQVKGIRKIKEKPRDFYA-DAAVWN 181

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237
              +   E  +   A +    +G R +D  +     +++    ++  KT   + + L
Sbjct: 182 AVYAKACEELKD--AMDLAYLTGQRPADVLKMRFTDIRDGSLEVQQNKTKKKLRILL 236


>gi|226306816|ref|YP_002766776.1| integrase [Rhodococcus erythropolis PR4]
 gi|226185933|dbj|BAH34037.1| putative integrase [Rhodococcus erythropolis PR4]
          Length = 375

 Score = 86.6 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 60/332 (18%), Positives = 106/332 (31%), Gaps = 30/332 (9%)

Query: 11  VTKERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
           V++  T+ G   Y   +R    +  R           AY +A      +           
Sbjct: 4   VSEYATKAG-TRYEVRYRTPDHQTTRKRGFKTKRDANAY-AARVEVDKQTGAFVQQSAGR 61

Query: 69  TTLKWLISEYRKSAHWGSLAVNS-RISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127
            T+  L  E+        L  +S R+   ++ + +  K G     +I   H++  V    
Sbjct: 62  ATIGELGVEWL--GRQAHLKPSSARVVKSAWDNHVQPKWGQTPVGRIKRTHVQQWVADMS 119

Query: 128 --HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
               P +  +    +  +   AV    + +NP   V+ P+RK       T   +Q     
Sbjct: 120 VDSGPVTITRCFGVLASILDDAVADRLLVVNPARGVKLPRRKRGEQTYLTMAQLQALAEQ 179

Query: 186 WSEGSQPRLAFEFLL-----YSGLRCS--DSCRAGVQHLQN-----NIFSIKTQKTGTII 233
             E     L   F        +GLR    D  R  V+ ++N         + + K+    
Sbjct: 180 VGERRGLVLLLGFGGLRFGEAAGLRVRHLDLLRRRVRVVENAVTVAGRVELGSPKSHAQR 239

Query: 234 TVELPDGFMKLLAMT---PIGKETFFINNDKQKMNATQFSIWFKAKATK--AGVN----K 284
           T+ +P    + LA         +  F N     M       W+     +  AG       
Sbjct: 240 TIAVPRLVTEALARQCEGKGRDDIVFPNVRGGHMTLPSGKSWWSGAVERCQAGDPSFPQI 299

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTV 316
             H +R  +A++   AGA    + A  G  + 
Sbjct: 300 GVHALRHTAASLMIAAGANPKAIQAQLGHASA 331


>gi|194333360|ref|YP_002015220.1| integrase family protein [Prosthecochloris aestuarii DSM 271]
 gi|194311178|gb|ACF45573.1| integrase family protein [Prosthecochloris aestuarii DSM 271]
          Length = 335

 Score = 86.6 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 34/285 (11%), Positives = 80/285 (28%), Gaps = 48/285 (16%)

Query: 88  AVNSRISFESYFDQI------------IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQ 135
           + ++R ++ +   Q                        +  +     +  +   P S  +
Sbjct: 34  SRHTREAYRTDICQFYTFIRYQHTLADKDPIDPASISVLDVRLFMGELLEKGLQPKSIAR 93

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-FKSFWSEGS---- 190
            L +++  + + +    V ++    V  P+         ++ + ++ F    S  +    
Sbjct: 94  KLAAVKSFYNYLLETGAVKVSVPSQVITPRFSKPVPGFLSERETEKLFDELLSLPAPGEA 153

Query: 191 --------------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITV 235
                         + R   E L   GLR S+      +++      ++   K G    V
Sbjct: 154 LGAVRAGDGGFTYARDRALLEVLYGCGLRISEVIGLQYENVNLQDSLLRVSGKGGKQRIV 213

Query: 236 ELPDGFMKLLAM--------------TPIGKETFFINNDKQKMNATQFSIWFKAKATK-A 280
            L       L                        F+    +++         +   +   
Sbjct: 214 PLGGPARTALRNYFEVRRNFFRMKNEESPDASYVFVTKKGRRIYPVLVQRVTRKYLSAVT 273

Query: 281 GVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            +  K+ H +R   AT   ++GA    +    G   +   E YT 
Sbjct: 274 EIKYKNPHVLRHSFATHMLNSGADLKSVSEMLGHTNLTTTEIYTH 318


>gi|255975295|ref|ZP_05425881.1| integrase [Enterococcus faecalis T2]
 gi|255968167|gb|EET98789.1| integrase [Enterococcus faecalis T2]
          Length = 388

 Score = 86.6 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 43/290 (14%), Positives = 87/290 (30%), Gaps = 48/290 (16%)

Query: 77  EYRKSAHWGSLAVNS-RISF---ESYFDQIIRKSGDFDYRKITTKHIRSGVE-------- 124
           E+ K   +    + +   ++   +    + +   G     KI   HI+   +        
Sbjct: 76  EFYKKYFFPWYKLGTIEKTYVKTDKTLKRALAYFGKMQMEKIRPIHIQEFQQFLVQECFV 135

Query: 125 ---SRKHTPSSAIQFLTS---MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
                K  P S          +R++FK A+  E +  NP  ++ + + +   +  WT ++
Sbjct: 136 TNKEGKIRPLSNNYIKQIFNKLRIIFKRAMVLEVIDENPVDTIGKIRTQRSVVAFWTVDE 195

Query: 179 MQQ-----FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--------NNIFSIK 225
            ++     ++  + E    R+     + +GLR  +        +         N    I+
Sbjct: 196 FKKVYNCSYRCDFQEAFYKRMMRFLFV-TGLRSEELFALQWPDIDFHKGTCCVNKSLYIR 254

Query: 226 TQ--------KTGTIITVELPD-----GFMKLLAMTPI--GKETFFINNDKQKMNATQFS 270
           T+        K  + I     D        +             F    D    +   F 
Sbjct: 255 TRTDYDFSDTKNASSIRTITLDKQTIVDLREWKETQKTIGDDLGFIFTFDGLPPSPKTFL 314

Query: 271 IWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
              K  A  AGV     HG+R        +     + +    G  +V   
Sbjct: 315 GRVKKLAEIAGVKPIHLHGLRHSHVAFLIEHNNNIYAVSKRLGHSSVKTT 364


>gi|237723556|ref|ZP_04554037.1| tyrosine type site-specific recombinase [Bacteroides sp. D4]
 gi|229438107|gb|EEO48184.1| tyrosine type site-specific recombinase [Bacteroides dorei
           5_1_36/D4]
          Length = 399

 Score = 86.6 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 43/308 (13%), Positives = 104/308 (33%), Gaps = 28/308 (9%)

Query: 56  PKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD---QIIRKSGDFDYR 112
            K      P+      K  I +  +  +     ++ +  + S       +     D D  
Sbjct: 95  EKISNSVKPKTVEEAFKEYI-QLLQDENRRGYMLSVKQVYNSLIKYNKHLNIHFTDMDVA 153

Query: 113 KITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYV--AINPCLSVERPKRKTE- 169
            +      + + +     ++      ++R ++ +A++++ V     P    +  K   E 
Sbjct: 154 WLKK--YETWLRNNGLAENTIGIRFRTLRTIYNYAIQEDMVRAEHYPFKKYKVSKLNQET 211

Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS----GLRCSDSCRAGVQHLQNNIFSIK 225
             R  +KED+ +   +  +    RL  +   ++    G+   D      +++ +N    K
Sbjct: 212 AKRALSKEDINRVLQYQPDNRFMRLPIDLFAFTYYMGGINFVDIANLTQKNIIDNRLVYK 271

Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKETFFI-------NNDKQKMNA-----TQFSIWF 273
             KTG +I + L    ++L+         +           +++K N      T+ +   
Sbjct: 272 RSKTGKLIKLPLVPQAVELIKKYHDKNSPYLFPIFSNRHTTEQEKANRLHKVITKVNKRL 331

Query: 274 KAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           K    + G+    + +  R   ATI   AG +   +    G  +    + Y    D  ++
Sbjct: 332 KQIGEELGIPIPITTYVARHSQATIMKKAGISTAIIGQIMGHSSERVTQVYLDSFDNEQI 391

Query: 332 GIKNSRRI 339
                + +
Sbjct: 392 N-NAMKNL 398


>gi|167628193|ref|YP_001678692.1| phage integrase family protein [Heliobacterium modesticaldum Ice1]
 gi|167590933|gb|ABZ82681.1| phage integrase family protein [Heliobacterium modesticaldum Ice1]
          Length = 368

 Score = 86.6 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 40/279 (14%), Positives = 89/279 (31%), Gaps = 26/279 (9%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGV-----E 124
              ++  Y +      L   +    +   D +I+    D     IT   +R        +
Sbjct: 58  FGSMVELYMEDCK-TRLRPTTYEGKKYLIDSKILPVFKDMPVNAITPATVRKWQNGLLDD 116

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP-KRKTEGIRPWTKEDMQQFK 183
              ++P+        +  +F +A R   +  NP        K+  E ++ WT ++ + F 
Sbjct: 117 ESDYSPTYLKTINNQLSAIFNYARRYYGLQTNPAAVCGSIGKKNAESMQFWTTDEFRLFA 176

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII---TVELPDG 240
           +  S+       F  L ++G+R  +     +  +      I   K+   +    V  P  
Sbjct: 177 AAISDKPASYAIFNTLFWTGMRSGELLALTLNDIDFESKKISITKSYARVGNEDVISPPK 236

Query: 241 FMKLLAMTPIGKETF-FINNDKQK------------MNATQFSIWFKAKATKAGVNK-SA 286
             K   +    +     + +   +                  +         +GV K   
Sbjct: 237 TPKSRRVITASEFLLEILKDYAGRLVDYEPSDRLFDYTKHFLASEMARGCKLSGVKKIRI 296

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
           H +R   A++  + G +   +    G ++V+   +TY  
Sbjct: 297 HDIRHSHASLLIELGFSPLLISERLGHESVETTLQTYAH 335


>gi|67077924|ref|YP_245544.1| integrase-recombinase protein [Bacillus cereus E33L]
 gi|66970230|gb|AAY60206.1| integrase-recombinase protein [Bacillus cereus E33L]
          Length = 285

 Score = 86.6 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 33/254 (12%), Positives = 77/254 (30%), Gaps = 23/254 (9%)

Query: 85  GSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVESRKHTPSSAIQF---LTS 139
                N+   +  +     R   +       IT   I+  +       + A       ++
Sbjct: 23  QGKRPNTVHDYSRHICNFHRWLVTEGSSIHDITRYDIQQYINFLSIQGNQATTITPKYSA 82

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEF- 198
           +    K+  +++ +  N    +E    +    +  +K+   Q      +    R      
Sbjct: 83  IVAYMKFVGKEKLL--NHIKRLEVRHIRNISPKSLSKKQRNQLLREVEKSQNLRNIAIVY 140

Query: 199 -LLYSGLRCSDSCRAGVQHLQN----NIFSIKTQKTGTIITVELPDG----FMKLLAMTP 249
            +LY+G+R  +        ++         I+  K G    + LP          L    
Sbjct: 141 TMLYTGVRVFELVALNRDDVEMKERSGFIIIRDGKGGISRKIPLPAESRYHLQNYLQKRT 200

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMA 309
             +   F++N +++++       F+      G+   AH +R         +G     +  
Sbjct: 201 DLEVPLFLSNFRKRLSKRSAQRIFEQY----GIG--AHMLRHTYGRELVASGIDLATVAD 254

Query: 310 TYGWKTVDQAETYT 323
             G   V+  + Y 
Sbjct: 255 LMGHNDVNTTKRYA 268


>gi|307289375|ref|ZP_07569329.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0109]
 gi|306499630|gb|EFM68993.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0109]
          Length = 378

 Score = 86.6 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 67/376 (17%), Positives = 129/376 (34%), Gaps = 57/376 (15%)

Query: 17  RHGKIIYY---FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
           + G    Y   ++K  G   +L      T   A  +A       ++ +   ++       
Sbjct: 6   KRGNSWQYEISYKKQDGTHSKLRKSGFKTKREAKEAADEIEYNLKKGLQGDKQNI----- 60

Query: 74  LISEYRKSAHWGSL------AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127
           L+SEY K   W +L      +  +   ++   + I R   +    ++T    +  +    
Sbjct: 61  LLSEYFK--DWMNLYKKDVVSEITYRKYKDTLNNIERYMPNIILSQLTRPLYQRYLNKFA 118

Query: 128 --HTPSSAIQFLTSMRVLFKWAVRQEYVAINPC-LSVERPKR--KTEGIRPWTKEDMQQF 182
             H  S+ I+F   +R   K AV +  +  +P   +V + K   KT+  +     D ++ 
Sbjct: 119 EEHMKSTVIKFNNHIRASLKDAVEEGLILFDPTRKAVIKGKESDKTKNDKFLDYGDFKRL 178

Query: 183 KSFWSEGSQPRLAFEFLL----YSGLRCSDSCRAGVQHL--QNNIFSIK---------TQ 227
                +G  P  A   ++     +G+R ++        +  ++ I  I            
Sbjct: 179 MELAEKGIDPHYASPIMVVVAGATGMRFAELLGTTWNDINFEDEIIDIHKTWNYKMNCWG 238

Query: 228 KTGTIITV----------ELPDGFMKLLAMTPIGKET------FFINNDKQKMNATQFSI 271
           KT    +V          +L   + K         E        F N+    ++    + 
Sbjct: 239 KTKNESSVRKIKIDFHTAQLLKEYKKAQKELFDKLEVQNPEQFIFYNSQNGLISNNAVTK 298

Query: 272 WFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADR 328
           + + K ++ GV K  + HG+R   A++    G     +    G  ++D    TY      
Sbjct: 299 YLRKKLSEIGVTKKFTLHGLRHTHASVLLYQGCDTIYVSKRLGHSSLDTTITTYLHII-- 356

Query: 329 IRLGIKNSRRISSVVD 344
             L  KN   I SV D
Sbjct: 357 KELDNKNDEMIDSVFD 372


>gi|300872297|gb|ADK38976.1| IntI4 [Vibrio sp. V96(2010)]
          Length = 291

 Score = 86.6 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 41/288 (14%), Positives = 85/288 (29%), Gaps = 57/288 (19%)

Query: 93  ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEY 152
            ++  +  + I          +  K +   +         A +  +       +  ++  
Sbjct: 2   RAYLHWITRYIHFHNKKHPSLMGDKEVEEFLTYLAVQGKVATKTQSLALNSLSFLYKE-- 59

Query: 153 VAINP-CLSVE--RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDS 209
           +   P  L +   R + + +     T++++++         + +L  + L  SGLR  + 
Sbjct: 60  ILKTPLSLEIRFQRSQLERKLPVVLTRDEIRRLLEIVDP--KHQLPIKLLYGSGLRLMEC 117

Query: 210 CRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLAMTPIGKETFFINN-------- 259
            R  VQ +  +  +I+    K G   TV L       L       + ++  +        
Sbjct: 118 MRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHLKEQIALAKRYYDRDLHQKNYGG 177

Query: 260 --------------------------------------DKQKMNATQFSIWFKAKATKAG 281
                                                  +  MN T      +  A +AG
Sbjct: 178 VWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVMRRHHMNETVLQKAVRRSAQEAG 237

Query: 282 VNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           + K+   H +R   AT   + GA    +    G   V   + YT   D
Sbjct: 238 IEKTVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHVLD 285


>gi|295102865|emb|CBL00410.1| Site-specific recombinase XerD [Faecalibacterium prausnitzii L2-6]
          Length = 387

 Score = 86.6 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 45/312 (14%), Positives = 96/312 (30%), Gaps = 42/312 (13%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGV------ 123
              L   +  S     +  ++   ++      ++   GD    ++    +          
Sbjct: 65  FSELAELWLASFA-QGVKESTLTHYQYTLHKYLLPVLGDLPVSELNESTLERLFLQILSP 123

Query: 124 ESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLS-VERPKRKTEGIRPWTKEDM 179
               H P   SSA +    ++ + K+A R   +   P    V+ P++K    RP +  + 
Sbjct: 124 SDNSHKPLGTSSAQECFGMLKRICKYAARLHLMP--PLELCVKLPRQKKAEPRPLSLAEQ 181

Query: 180 QQFKSFWSEGSQPRLA-FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT--------- 229
              +SF  +   PR       +  GLR  + C             +  Q+T         
Sbjct: 182 AALRSFLLDPPTPRKIGVLLQMELGLRIGEVCGLKWSDFDLKNGILTIQRTVCRIPLGDG 241

Query: 230 ------------GTIITVELPDGFMKLLAMTPIGK--ETFFIN-NDKQKMNATQFSIWFK 274
                        +   + L  G + +L         +T+F++  + + +    +    +
Sbjct: 242 HTKLIVQTPKTRKSTREIPLSTGLVAILRKLSKDVTPDTWFLSGTESRPVEPRCYRKSIR 301

Query: 275 AKATK-AGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKG-ADRIRL 331
               + A      H +R   AT    AG     L    G    +   + Y     +R + 
Sbjct: 302 CYLKRSALRTIHPHVLRHTFATTCLQAGCDIKTLSELLGHANANVTLQRYVHSDLNRKQK 361

Query: 332 GIKNSRRISSVV 343
            ++    +S  +
Sbjct: 362 ALQRVYALSDRI 373


>gi|255103348|ref|ZP_05332325.1| phage integrase family protein [Clostridium difficile QCD-63q42]
 gi|255652426|ref|ZP_05399328.1| phage integrase family protein [Clostridium difficile QCD-37x79]
          Length = 311

 Score = 86.6 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 47/286 (16%), Positives = 90/286 (31%), Gaps = 26/286 (9%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG----DFDYRKITTKHIRSGV---ESR 126
           L  +Y+++      +  +  ++E    Q  +       D     I  + I + +      
Sbjct: 22  LWKQYKRAKQIAGKSEKTIYNYECDIMQFFKFLNIECFDALLTDINEEEIEAYIGYCMEH 81

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE--GIRPWTKEDMQQFKS 184
            +      + ++S+  L  +  ++  +  N C  +ERP    E       T+E + + K 
Sbjct: 82  GNNEKRIRRRISSISSLLSFLKKKRKITDNWCEMIERPGTGEEVQKRTFLTEEQLSKLKE 141

Query: 185 FWSEGSQPRLA--FEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDG 240
             SE    +L       L +  R ++  +    ++   N      T K G        + 
Sbjct: 142 KLSEQDNLQLEVYINLGLATMARSNEISQFRWDNIDLDNRWIHGITAKGGVSRDFRFSEE 201

Query: 241 FMKLLAMTP-------IGKETFFINNDKQKMN---ATQFSIWFKAKATKAGVNKSA-HGV 289
              LL           I     F      K N   +   S W K      G+     H +
Sbjct: 202 VQHLLIEWKDYLSQNNIDYPYIFFTRYGGKYNQVNSNVLSSWVKKAFRLIGIEGGYNHDL 261

Query: 290 RKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADRIRLGIK 334
           R   + +  D G     +    G   VD     YT   ++ +L  +
Sbjct: 262 RHSMSNLLKDRGVPITTVSKLLGHSGVDVTINHYT-IENKNKLAEE 306


>gi|307578192|gb|ADN62161.1| phage-related integrase [Xylella fastidiosa subsp. fastidiosa
           GB514]
          Length = 346

 Score = 86.6 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 38/236 (16%), Positives = 79/236 (33%), Gaps = 19/236 (8%)

Query: 8   PPFVTKERT-RHGKII--YYF--RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62
           P  + + R  + GK+   +Y+  R   GRR+ +P   +        + L       E   
Sbjct: 12  PKMLRRTRVLKSGKVWESFYYNGRTTEGRRVEIPLGGDLNEAKRQWAELECCKAPVETEV 71

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122
                   L ++   Y +     + A  +R   +S    + +  GD +   +T + +   
Sbjct: 72  --------LGFIFDRYLREVA-PTKARATRYQIKSCIITLRKVFGDVNIHTVTPQQLAQY 122

Query: 123 VESRKHT-PSSAIQFLTSMRVLFKWAVRQEYVAI-NPCLSVERPKRKTEGIRPWTKEDMQ 180
            + R  T P  A + L+    ++  A    Y    N    + + K K             
Sbjct: 123 RDKRARTAPVLANRELSVFSSVWTMAREWGYTNKENQVKGIRKIKEKPRDFYA-DAAVWN 181

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
              +   E  +   A +    +G R +D  +     +++    ++  K    I +E
Sbjct: 182 AVYAKACEELKD--AMDLAYLTGQRPADVLKMRFTDIRDGSLEVQQNKKKLRILLE 235


>gi|302338977|ref|YP_003804183.1| integrase family protein [Spirochaeta smaragdinae DSM 11293]
 gi|301636162|gb|ADK81589.1| integrase family protein [Spirochaeta smaragdinae DSM 11293]
          Length = 420

 Score = 86.6 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 35/296 (11%), Positives = 89/296 (30%), Gaps = 42/296 (14%)

Query: 85  GSLAVNSRISFESYFDQII--RKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTS 139
              +   R    S  D+++   +  +F   ++T   I    +  + +     +    + +
Sbjct: 107 RRYSDTFRKDQRSRIDRLVLTHRIAEFRMDELTPGDIEDFKKDLRRSGTGTRTINLTVGA 166

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ-------- 191
           +R      + +  +  +P + V   K   E    ++ E++++  SF   G +        
Sbjct: 167 IRTAINEGLHRGDIKNDPTVGVHSIKSDEEERGIFSIEEIRKMFSF-PGGLRLWGYDTGY 225

Query: 192 -------------PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL- 237
                        P      +  +G R S   R   + + +++ + +  K     ++ + 
Sbjct: 226 HGSPSGEKVLPIIPYTLALLMFATGERPSAILRLNWEDVDSDMITFRVTKAAGARSIPIV 285

Query: 238 ------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKAT--------KAGVN 283
                        +         F  ++  Q++    F   F               G  
Sbjct: 286 TMATKALRELSDSMLHVAPADPVFCHDDTGQRLTYAFFPKRFAHMMATLDLPTNDADGRK 345

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
           ++ + ++    T   D GA    +    G       +  TK   R +   +   +I
Sbjct: 346 RTPYSLKSSLITHLIDGGADPILVREYVGHSHGTGEKRLTKVQSRYKKAQRERLKI 401


>gi|139438178|ref|ZP_01771731.1| Hypothetical protein COLAER_00719 [Collinsella aerofaciens ATCC
           25986]
 gi|133776375|gb|EBA40195.1| Hypothetical protein COLAER_00719 [Collinsella aerofaciens ATCC
           25986]
          Length = 356

 Score = 86.6 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 47/332 (14%), Positives = 103/332 (31%), Gaps = 35/332 (10%)

Query: 21  IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRK 80
           +  Y+R   G +    +  +  F     +A+     K            T    +  Y  
Sbjct: 14  VQCYYRDARGSK---RHKTKRGFSSEVEAAVWEGQFKSLNGG---AMDMTFSEFVEVYAS 67

Query: 81  SAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHT---------P 130
                 +  ++ I+ E    D+++   GD     +    +                   P
Sbjct: 68  EVK-PRIREHTWITKEYIINDKLVPFFGDMRMCDVRPIDVIRWQNELTEHRDAEGKSWAP 126

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG-IRPWTKEDMQQFKSFWSEG 189
           +        +  +F  A R   +  NP   V++   K  G ++ WTK++  +F     + 
Sbjct: 127 TYLRTVNNQLNAIFNHAERYYGLTDNPVRRVDKIGSKKGGEMQFWTKDEYLRFSEAVMDK 186

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT----------------GTII 233
                AFE L ++G+RC +               ++  K+                 ++ 
Sbjct: 187 PLSFHAFELLYWTGIRCGELLALTPSDFMLESSRLRINKSYQSLHGVDTVTDPKTPKSVR 246

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKF 292
           T+ +P      +A     ++    +     +     +   +     +GV +   H +R  
Sbjct: 247 TIVMPAFLRDEMADFIELRDDVAPDERLFAVTKHFLAHEMERGCKASGVKRIRVHDIRHS 306

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324
             ++  + G +A  +    G + VD    Y  
Sbjct: 307 HVSLLIEMGFSALAIAERMGHEAVDITYRYAH 338


>gi|114799242|ref|YP_759022.1| phage integrase family site specific recombinase [Hyphomonas
           neptunium ATCC 15444]
 gi|114739416|gb|ABI77541.1| site-specific recombinase, phage integrase family [Hyphomonas
           neptunium ATCC 15444]
          Length = 353

 Score = 86.6 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 53/357 (14%), Positives = 115/357 (32%), Gaps = 53/357 (14%)

Query: 1   MTPSLRLPPFVTK-ERTRHGKII--YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPK 57
           M+   R+P    + +  R G+ +   + R+                   +   +     +
Sbjct: 1   MSTIYRMPKGQWRAQVRRKGRYVSQCFVRRKDA--------------EEWALKMERRVDR 46

Query: 58  REYINSPRKKP-TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT 116
            E ++       +T   LI      A    +    R S     D++  K G      +  
Sbjct: 47  GESVSKNIPDDLSTFAQLID--LHIADMLEVGKALRRSKTYSLDKLKGKLGHVRLEVLDR 104

Query: 117 KHIRSGVESRK---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL------SVERP--- 164
           + I      R+     P +    ++ ++ +   A     + ++P        +++R    
Sbjct: 105 ERIIQFARDRRTEGAGPPTISADISYIKTVLLHASAVHGLPVSPDQVDLARVALKRLGLV 164

Query: 165 -KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE----FLLYSGLRCSDSCRAGVQHLQN 219
            K +    RP T+E++ Q  +++   S+ +        F + + +R S+ C      +  
Sbjct: 165 GKAQERDRRP-TQEELDQLLAYFEGNSRQKSPMARLVTFAVATAMRQSEICSIEWPDVDE 223

Query: 220 NIFSIK-------TQKTGTIITVELPD--GFMKLLAMTPIGKETFFINNDKQ--KMNATQ 268
              ++         QK G    V L D  G+     +    + T    N  +    N   
Sbjct: 224 RRRTVTVRDRKDPRQKDGNDQRVPLVDLTGYDAWDILMAQRRST---TNKGRVFPYNPRS 280

Query: 269 FSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
               F+    + G+ +   H +R    +   +AG    ++    G K     + YT 
Sbjct: 281 IGTAFRRACVELGIEDLHFHDLRHEGTSRLFEAGLQIEQVALVTGHKDWKMLKRYTH 337


>gi|134093678|ref|YP_001098753.1| putative integrase/recombinase [Herminiimonas arsenicoxydans]
 gi|133737581|emb|CAL60624.1| putative integrase [Herminiimonas arsenicoxydans]
          Length = 333

 Score = 86.6 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 41/312 (13%), Positives = 92/312 (29%), Gaps = 26/312 (8%)

Query: 25  FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHW 84
            RK    R +            + + +        +I+  + + TT   ++  Y      
Sbjct: 16  VRKKGYPR-KTQTFETRKAAKDWANLVESEMNHGTFIDRSQAEKTTFGDILQRY------ 68

Query: 85  GSLAVNSRISFE----SYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--TPSSAIQFLT 138
               V  R  ++         +           +         + R    +  + ++ L 
Sbjct: 69  KDQVVPDRRGYQMDNYRIAKLLKHDLAKRTLSTLRNVDFSKYRDERLQEVSRGTVLRELL 128

Query: 139 SMRVLFKWAV-RQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFWSEGSQPR 193
            +  +F  A         NP  S+ +PK+     R    ++    +   +  +       
Sbjct: 129 LISHVFSTAKKDWSIAVDNPIASIRKPKQGKSRDRRLQGDEEKRLLAAARDSFCRSPTLD 188

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251
              +  L +G+R  +  +     +   N++  +   K G    V L      ++      
Sbjct: 189 FCIQLGLETGMRAGEIVQLTSDQIDLQNHVIRLGKTKNGEDRVVPLTTTAEDIIRSMLPS 248

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMAT 310
           +     +      ++   S  F+    +A +     H +R  +A+  A        L   
Sbjct: 249 ENGRLTSFH----DSNGLSKAFRRACARAEIKGFCFHDLRHEAASRFAPT-MPVATLAKI 303

Query: 311 YGWKTVDQAETY 322
            GWKT+  A  Y
Sbjct: 304 MGWKTLQMAMRY 315


>gi|187927562|ref|YP_001898049.1| integrase family protein [Ralstonia pickettii 12J]
 gi|187724452|gb|ACD25617.1| integrase family protein [Ralstonia pickettii 12J]
          Length = 439

 Score = 86.6 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 50/295 (16%), Positives = 90/295 (30%), Gaps = 34/295 (11%)

Query: 49  SALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD 108
             L G  P+R     P+ KP  L  +I+ Y       ++A  +    E  F +      D
Sbjct: 109 RLLAGPEPQRMEPPKPKSKP--LSDVIALYLTEKKLDNVA-KTLEDKERTFTEFQGFFQD 165

Query: 109 FDYRKITTKHIRSGVESRKHTPSSAIQFL---TSMRVLFKWAVRQE-YVAINPCLSVE-- 162
            D          +         +SA +     + +R LF +A+    Y   NP   V   
Sbjct: 166 SDINAFDADTAIAYKNRLLAANASASRINAKTSFLRDLFAYAINNNLYFTTNPFEKVRVS 225

Query: 163 ---RPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLAF-EFLLYSGLRCSDSCRAGV 214
              + K++ E  R +T +D++   +                    LY+G R  +     +
Sbjct: 226 SKTKLKQQVESYREFTDDDLKLIFAEAPYREFMNKPDYHWLPLLALYTGARVEELASLSL 285

Query: 215 QHL--QNNIFSIKTQKTG---TIITVELPDG------FMKLLAMTPIGKETFF--INNDK 261
             +     I   + +K     +I  + L            + ++   G    F  +   K
Sbjct: 286 NQIKKDGGIHYFEIEKAKNLNSIRKIPLHRQIETSGFLAYVDSVRAQGATMLFPHLTAGK 345

Query: 262 QKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAGATAHELMATYGW 313
              +    S  F A      +    K  H  R    T   +       +M+  G 
Sbjct: 346 NGYSKNM-SRRFGAYLDSLKISDSRKVFHSFRHTFITRMTELNVHPVLVMSMVGH 399


>gi|24460043|dbj|BAC22654.1| probable integrase [Comamonas sp. NCIMB 9872]
          Length = 404

 Score = 86.6 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 54/332 (16%), Positives = 106/332 (31%), Gaps = 32/332 (9%)

Query: 21  IIYYFRKGH-------GRRIRLPYPHESTFIPAYMSALT-GSTPKREYINSPRKKPTTLK 72
            +  +R G        GR   L       F       +  G  P  E   +  ++  T++
Sbjct: 46  WVLRYRAGGRAVELTLGRYPDLTLSAARRFAAEKRVEVQQGRDPAAEKRKAKSRRDWTVR 105

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132
            L+ +YR +A   +LA +++ S+     +I    G     K+    +   +E        
Sbjct: 106 QLVEDYR-TAVVPTLASSTQCSYGRNLKRIEAGLGAVKITKVEASDVVGLIERSGLGWVE 164

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVER-----PKRKTEGIRPWTKEDMQQFKSFWS 187
           A   L   + +F+ A  +  + +NP L VE      P+ K       T++++        
Sbjct: 165 ANTLLIVQKAIFRRAAGKRLINVNPVLGVELSAIIGPRPKIRQRLMLTRDELAAVM-HAQ 223

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKL- 244
              +  LA   LL +G+R S+  +A  +H+      + I + KTGT + + L    ++  
Sbjct: 224 MSQENLLALRILLATGVRASELFQARKEHVHLDEARWHIPSSKTGTGMDIPLESIVVEWF 283

Query: 245 --LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK------------SAHGVR 290
             L                 +             + +  ++             + H +R
Sbjct: 284 EELGKLSTHSTYVLPTRAASRAERHGGDAHISKDSIREAIDYWLDLYSPPVRRFTPHDLR 343

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETY 322
               +     G            K       Y
Sbjct: 344 STMKSHMRALGVNRDISEMCLNHKLPGVEGIY 375


>gi|281424440|ref|ZP_06255353.1| site-specific recombinase, phage integrase family [Prevotella oris
           F0302]
 gi|281401439|gb|EFB32270.1| site-specific recombinase, phage integrase family [Prevotella oris
           F0302]
          Length = 285

 Score = 86.6 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 39/283 (13%), Positives = 95/283 (33%), Gaps = 27/283 (9%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132
            +++ ++K     +LA N+  S+    +   +   + + + +       G       P +
Sbjct: 18  NMVTTFQKHLAKTNLAPNTITSYVWTVNYFFKHYKEVNKKNLLA---YKGFLVESFKPQT 74

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI--RPWTKEDMQQFKSFWSEGS 190
               L ++    +++ +++         V+  K + +       +  D +  K+      
Sbjct: 75  VNLRLQAINKFLEYSKQEKL-------KVKFVKVQQKNFLENVISDADYKFLKTKLKADG 127

Query: 191 QP--RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM----KL 244
                    F+  +G R S+  +   +H+Q     +   K G I  + +P        K 
Sbjct: 128 YDEWYFIIWFMAATGARVSELLQIKAEHVQVGYLDLY-SKGGKIRRLYIPKNLRTEANKW 186

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAG 301
           +    +     F+N    ++     +   K  A K G+N+     H  R   A    D  
Sbjct: 187 IKEKGLTSGYIFLNRFGNRITTRGIAQQLKYFAEKYGINRDVVYPHSFRHRFAKNFLDRF 246

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
                L    G ++++    Y +     R   +  + +  +V+
Sbjct: 247 NDLALLADLMGHESIETTRIYLR-----RTASEQQKIVDKIVN 284


>gi|251772812|gb|EES53373.1| phage integrase family protein [Leptospirillum ferrodiazotrophum]
          Length = 351

 Score = 86.6 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 50/313 (15%), Positives = 98/313 (31%), Gaps = 24/313 (7%)

Query: 27  KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGS 86
           +  G  +++    +      +   +  S  +  + ++   + TTLK  +  Y +      
Sbjct: 20  RRKGYPVQMRSFDKREDGEKWAREIESSMDRGVFKSTKEGEKTTLKEALDRYLE--EVSK 77

Query: 87  LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFLTSMRVL 143
                R                     I  K I      RK    +  +    L  +  L
Sbjct: 78  HKKGHRRERSRIEKWKAHSLSSRYLASIGPKDIADYASERKSEGFSMRTIHLELAIISHL 137

Query: 144 FKWAV-RQEYVA-INPC--LSVE-----RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
           + +A  +    A  NP     V+     R +      R  +  + ++     +E  +   
Sbjct: 138 YNYAAAKWGMRALENPVAPTRVKGTDPHRGQNYRGRERTLSLSEKEKLFEHLNEEMKQ-- 195

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252
                L +G+R  +     + ++     I  +   K G    V L    +  L      K
Sbjct: 196 IVTLALETGMRRGELISLTISNVDLTKKIVKLDETKNGDSREVPLSPAAVDTLKAVLGNK 255

Query: 253 ETFFINNDKQKMN--ATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMA 309
           +   +  D +       + +  F   A +AG+ +   H +R  +AT  A     AHEL  
Sbjct: 256 K--IVGFDGKLWTMGPDRVTSVFANAAKEAGLKDIRFHDLRHTAATKLA-GIYQAHELAK 312

Query: 310 TYGWKTVDQAETY 322
             G K ++    Y
Sbjct: 313 ILGHKVLNMVMRY 325


>gi|86741040|ref|YP_481440.1| phage integrase [Frankia sp. CcI3]
 gi|86567902|gb|ABD11711.1| phage integrase [Frankia sp. CcI3]
          Length = 322

 Score = 86.6 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 51/294 (17%), Positives = 96/294 (32%), Gaps = 44/294 (14%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESY---FDQIIRKSG------------DFDYRKITTKH 118
           L + YR       LA +SR ++ S    F + +   G            D   R    + 
Sbjct: 27  LFAAYRAELDHVRLAEHSRRAYASRVAGFLRWLDTDGAAADPTGADPLSDAHARDFAVRD 86

Query: 119 IRSGVES-RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
            R+ + +  K  P++    LT++   F W     ++       V+R     +  R  T +
Sbjct: 87  YRAHLLTVAKKRPATINAHLTALDHFFTW----RHLGR---AVVDRADLPEQAPRALTDD 139

Query: 178 DMQQFKSFWS--EGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKT-- 229
           + ++           + R   E L  +G+RC++     +  +    +     ++  K   
Sbjct: 140 EARRVLRAAERLPSLRDRTIIELLYNTGVRCAELVALDLDDVPVTARTGAVHVRAGKGRD 199

Query: 230 -GTIITVELPDGFMKLLAMTPIG---------KETFFINNDKQKMNATQFSIWFKAKATK 279
            G   T+       + L                   F+N   ++++              
Sbjct: 200 GGKPRTIPANPRARRALTDWKPARAAWPNAEADPALFLNRYGRRLSTRTVDQVVADLGRS 259

Query: 280 AGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK--GADRIR 330
            G++  + H +R   AT     GA    +    G    D    YTK   ADR+R
Sbjct: 260 VGIDDLTPHVLRHTFATAMLRRGADLVLVAELLGHARTDTTRVYTKPTEADRLR 313


>gi|330503525|ref|YP_004380394.1| phage integrase family protein [Pseudomonas mendocina NK-01]
 gi|328917811|gb|AEB58642.1| phage integrase family protein [Pseudomonas mendocina NK-01]
          Length = 329

 Score = 86.6 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 46/313 (14%), Positives = 93/313 (29%), Gaps = 18/313 (5%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEY 78
           G+         GRR R  +  +        +          +   P+ +   L  L + Y
Sbjct: 9   GRWKVDVEPIKGRRFRKTFKTKGEAQRFEATCRANCIDSPAWTPKPKDRRR-LSELCTRY 67

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI---RSGVESRKHTPSSAIQ 135
            +  H  +LA     +       + +  GD    K+T       RS +        +   
Sbjct: 68  HE-LHGHALADG--AAILRTLQNLAKDLGDPIAVKLTGNAFCETRSELLKAGIQGKTMNN 124

Query: 136 FLTSMRVLFKWAVRQEYVA-INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ--- 191
            L  ++ LF    R   +   NP ++V   + +   I   +   + +      + +    
Sbjct: 125 RLGYLKALFNELHRLGDIDYPNPLVNVRPLRLQERPISFLSTCQIAELLDALDDRTTSPG 184

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251
             L     L +G R  ++     + ++N + +    K+    ++ +     K L +    
Sbjct: 185 IGLIARVCLSTGARWGEAQALTPERVRNGMVTFANTKSKRTRSIPIDRELEKALQIYFKR 244

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATY 311
              F   N     +        K  A +A      H +R   A+     G     L    
Sbjct: 245 HGLF--TNCMLTFSRVLDKTSIKLPAGQA-----THVLRHTFASHFVMRGGNILTLQKIL 297

Query: 312 GWKTVDQAETYTK 324
           G  ++     Y  
Sbjct: 298 GHTSLAMTMRYAH 310


>gi|325677591|ref|ZP_08157250.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
 gi|324110713|gb|EGC04870.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
          Length = 364

 Score = 86.6 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 55/356 (15%), Positives = 114/356 (32%), Gaps = 41/356 (11%)

Query: 24  YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL----ISEYR 79
           Y R       R        +   Y  + T +  K + + S    P+    L    I +  
Sbjct: 14  YHRSDGRWEGRFYCKGTKKYRSVYGRSYTETKEKLDKLRSEVLVPSVRCVLLVIDILKMW 73

Query: 80  KSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQ 135
             A   S+  +S   +    +  +I       Y ++    I   +  +     +P     
Sbjct: 74  LEARRPSIKESSYAGYRHKLEKHLIPYFDKMKYDRLDLSGISKFITDKLTEGLSPKYISD 133

Query: 136 FLTSMRVLFKWA-VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK-SFWSEGSQPR 193
            +  ++   +WA +   Y   N   + + PK+KT+    ++  + ++   +  +E S   
Sbjct: 134 MVIMVKSAARWAEITHNYA--NQVKNAKLPKKKTKEASFFSPAEQKKIISTVRAEHSNTG 191

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII-------------------- 233
                 L++G+R  ++C      +  +   +   KT   I                    
Sbjct: 192 CGVMLTLFTGMRIGEACALKWADIDFDEKMLHVTKTVQRIATFGSESKSAVKVTAPKSES 251

Query: 234 ---TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGV 289
               + LPD  + +L         + ++  ++ +    FS  +KA   KA V  +  H +
Sbjct: 252 SVRDIPLPDFLVDMLREYRGKDTDYILSGTEKVVEPRCFSNRYKALLKKADVPSRKYHSL 311

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGA-DRIRLGIKNSRRISSVV 343
           R   A  +         L    G    +     Y   + DR         R+ ++V
Sbjct: 312 RHTFAVNALHQDFDIKTLSELLGHSNANITMSVYLHTSMDRK---SACMDRLQALV 364


>gi|320527410|ref|ZP_08028592.1| site-specific recombinase, phage integrase family [Solobacterium
           moorei F0204]
 gi|320132267|gb|EFW24815.1| site-specific recombinase, phage integrase family [Solobacterium
           moorei F0204]
          Length = 307

 Score = 86.6 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 34/284 (11%), Positives = 95/284 (33%), Gaps = 35/284 (12%)

Query: 90  NSRISFESYF-DQIIRKSGDF-DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWA 147
           ++  +++    + I    GD  +  +   +           +  +    +  ++++ K+ 
Sbjct: 25  STYAAYQLLIQNHIKPYFGDLYEVNEEKVQQFVFDKLDAGLSEKTIRDIIIVLKMILKFG 84

Query: 148 VRQEYVAINPCLSVERP-KRKTEGIRPWTKEDMQQFKSFWSEG-SQPRLAFEFLLYSGLR 205
           ++  Y+     + V+ P K++ + +   +K D ++F        +   L     L +G+R
Sbjct: 85  IKNGYLEYV-QIDVKFPSKQEKKDLDVLSKADQKKFMEHLRNNFTFKNLGIFICLSTGMR 143

Query: 206 CSDSCRAGVQHLQ--NNIFSIK---------------------TQKTGTII-TVELPDGF 241
             + C      +     +  ++                     T KT   +  + +    
Sbjct: 144 IGEICGLRWCDVDTAEGVIKVRHTLQRIYIIEGETRHTELLLDTPKTANSVRDIPMSSEL 203

Query: 242 MKLLAMT--PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISA 298
           +K+L      + +  + I+ND + +    +  ++K    +  +     H +R   AT   
Sbjct: 204 LKMLKSLNKVVNENYYVISNDIKPIEPRTYRNYYKKLCKQLDIPELKFHSLRHSFATRCI 263

Query: 299 DAGATAHELMATYGWKTVDQA-ETYTK--GADRIRLGIKNSRRI 339
           ++ A    +    G   +      Y       + +   K  R +
Sbjct: 264 ESKADYKTVSVLLGHSNISTTLNLYVHPNKEQKKKTIDKMLRSL 307


>gi|293568955|ref|ZP_06680268.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium E1071]
 gi|291588388|gb|EFF20223.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium E1071]
          Length = 382

 Score = 86.6 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 47/290 (16%), Positives = 94/290 (32%), Gaps = 48/290 (16%)

Query: 77  EYRKSAHWGSLAVNS-RISF---ESYFDQIIRKSGDFDYRKITTKHIRSGVE-------- 124
           E+ K   +    + +   ++   +    + +   G     KI   HI+   +        
Sbjct: 70  EFYKKYFFPWYKLGTVEKTYVKTDKTLKRALAYFGKMQMEKIRPIHIQEFQQFLVQECSV 129

Query: 125 ---SRKHTPSSAIQFLTS---MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
                K  P S          +R++FK AV  E +  NP  ++ + + +   +  WT ++
Sbjct: 130 TNKEGKIRPLSNNYIKQIFNKLRIIFKRAVVLEVIEENPVDTIGKIRTQRSVVAFWTVDE 189

Query: 179 MQQ-----FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--------NNIFSIK 225
            ++     ++  + E    R+     + +GLR  +        +         +    I+
Sbjct: 190 FKKVYNCSYRCDFQEEFYKRMMRFLFV-TGLRSEELFALQWPDIDFRKGTCSVSKSLYIR 248

Query: 226 TQ---------KTGTIITVELPDGFMKLLAMTPIGKET------FFINNDKQKMNATQFS 270
           T+          T +I T+ L    M+ L      ++T      F    D    +   F 
Sbjct: 249 TRTDYDFSDTKNTSSIRTITLDKQTMEDLREWKESQKTIGDDLGFIFTFDGLPPSPKTFL 308

Query: 271 IWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
              K  A  AGV     HG+R        +     + +    G  +V   
Sbjct: 309 GRVKKLAEVAGVKPIHLHGLRHSHVAFLIEHNNNIYAVSKRLGHSSVKTT 358


>gi|282899197|ref|ZP_06307172.1| Phage integrase protein [Cylindrospermopsis raciborskii CS-505]
 gi|281195912|gb|EFA70834.1| Phage integrase protein [Cylindrospermopsis raciborskii CS-505]
          Length = 158

 Score = 86.6 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 23/142 (16%), Positives = 52/142 (36%), Gaps = 5/142 (3%)

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI---KTQKTGTIITVELPDGFMKLL 245
            ++ RL  + L + GLR  +        +++N  +     T K     T+ +P      L
Sbjct: 7   NTRNRLILQLLFFCGLRVGELTILLWADIKDNGSTAYVHITGKGNKQRTLIIPPLLWASL 66

Query: 246 AMTPIGKETFFINND--KQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGAT 303
                  E+    +    + +         +  + + G++ S H +R   A+++   GA 
Sbjct: 67  KSHKTTNESPVFKSRKGGKNLTQKAVWDIVRTASQRIGISASPHWLRHTHASLALHNGAD 126

Query: 304 AHELMATYGWKTVDQAETYTKG 325
            +++  + G  +V     Y   
Sbjct: 127 INQVSTSLGHSSVATTTKYLHA 148


>gi|224282976|ref|ZP_03646298.1| phage integrase [Bifidobacterium bifidum NCIMB 41171]
 gi|313140132|ref|ZP_07802325.1| phage integrase [Bifidobacterium bifidum NCIMB 41171]
 gi|313132642|gb|EFR50259.1| phage integrase [Bifidobacterium bifidum NCIMB 41171]
          Length = 406

 Score = 86.6 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 58/389 (14%), Positives = 111/389 (28%), Gaps = 69/389 (17%)

Query: 20  KIIYYFRK-------GHGRRIRLPYPH--ESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
           K  ++FRK          RR  +      +S     + + +     +R+     +  P T
Sbjct: 21  KGRWHFRKDMGTDPATGRRRPPIEATGMVKSEARARFQAKIA--EWERDGRLPSKDGPKT 78

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
                  + +     ++   +  +  S+   +    GD    ++T   I       + T 
Sbjct: 79  -ADYFERWMEEHR-AAINPTTWRNESSWMRTMNAIIGDIRLNRLTANDINGMCRRLRRTR 136

Query: 131 SS--AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-FKSFWS 187
            S     +L  +  + + A R   +A +P  +V R              D  +  ++  +
Sbjct: 137 KSKTVNTYLAVLGAMLRTAKRDGLIADDPMENVGRMPEDRYERPILDVADPAKVIEAALA 196

Query: 188 EGSQP-------------RLAFEFLLYSGLRCSDSCRAGVQHLQ---------------- 218
           E                  L FE    +G+R  +        L+                
Sbjct: 197 EPDPAVAVFDSPDEREKWALMFELAFTTGMRPGERYGLMPYQLELHHGIPVINVCQQAKP 256

Query: 219 ----------------NNIFSIKTQKTGTII-TVELPDGF-----MKLLAMTPIGKETFF 256
                           +    +   KT   + TV +P G        ++          F
Sbjct: 257 IPAGATIPDWMEAEHLDGAIWLTKPKTAKGVRTVPIPQGLWDRLWAHIVKWGVPSHGLVF 316

Query: 257 INNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKT 315
            N     +        ++     AG+     +  R + AT  A AGA+  E  A  G   
Sbjct: 317 TNLYGHPIRRDNEEKRWRRALKMAGLPYVDIYSARHWLATELAAAGASDEERTAIMGHTD 376

Query: 316 VDQAETYTKGADRIRLGIKNSRRISSVVD 344
           +     YT   +R RL       +  + D
Sbjct: 377 IHTTSVYTHWRER-RLAETLDAALPDLRD 404


>gi|157324990|ref|YP_001468416.1| Int [Listeria phage A500]
 gi|66732998|gb|AAY52817.1| Int [Listeria phage A500]
          Length = 400

 Score = 86.6 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 46/314 (14%), Positives = 93/314 (29%), Gaps = 55/314 (17%)

Query: 66  KKPTTLKWLIS-EYRKSAHWGSLAVNSRISF-ESYFDQIIRKSGDFDYRKITTKHIRSGV 123
               T K  +  EY       +L V +   + +S   +     G     KITT HI + V
Sbjct: 70  PARMTFKAFVENEYMPKHAQNNLEVKTWTEYYKSIVARAYPAFGGVQMDKITTLHIVNLV 129

Query: 124 ESRKH--------------------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163
              +                     +P S      ++  +F+ AV  + +  NP   V  
Sbjct: 130 AKLQKPGARLDVKPTDSDEKKNKPLSPRSIRNIYFAINSVFETAVEWKVIPNNPAEVVRL 189

Query: 164 PKRKTEGIRPWTKEDMQQF-KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NN 220
           PK        +T  +++    +   E  + ++     L SG R ++     V+H+    +
Sbjct: 190 PKTTKRPPTIYTPAEIELLNAALLKEPLRLQVMIYIALISGCREAELAALEVKHVNLIED 249

Query: 221 IFSIKT---------------QKTGTIITVELPDGFMKLLAMTPIGKET----------- 254
             + +                 K      V +P     L+      +             
Sbjct: 250 ELTFEQTLVAKAGEGLLLKESTKNDLAGIVSIPGWLTTLIETYISNEVLDIQTEGKWANY 309

Query: 255 --FFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATY 311
              F + + + +        ++    +  +     H +R  SAT+  + G     +    
Sbjct: 310 KFLFADMEGKPIRPDSIYQRWRRFLERHNLPLIRFHDLRHTSATLLLNKGRDIKIIQERL 369

Query: 312 GW-KTVDQAETYTK 324
               +V  +  Y  
Sbjct: 370 RHKSSVTTSNIYAH 383


>gi|300872285|gb|ADK38970.1| IntI4 [Vibrio sp. V87(2010)]
          Length = 290

 Score = 86.6 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 42/289 (14%), Positives = 86/289 (29%), Gaps = 57/289 (19%)

Query: 93  ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEY 152
            ++  +  + I          +  K +   +         A +  +       +  ++  
Sbjct: 1   RAYLHWITRYIHFHNKKHPSLMGDKEVEEFLTYLAVQGKVATKTQSLALNSLSFLYKE-- 58

Query: 153 VAINP-CLSVE--RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDS 209
           +   P  L +   R + + +     T++++++         + +L  + L  SGLR  + 
Sbjct: 59  ILKTPLSLEIRFQRSQLERKLPVVLTRDEIRRLLEIVDP--KHQLPIKLLYGSGLRLMEC 116

Query: 210 CRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLAMTPIGKETFFINN-------- 259
            R  VQ +  +  +I+    K G   TV L       L       + ++  +        
Sbjct: 117 MRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHLKEQIALAKRYYDRDLHQKNYGG 176

Query: 260 --------------------------------------DKQKMNATQFSIWFKAKATKAG 281
                                                  +  MN T      +  A +AG
Sbjct: 177 VWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVMRRHHMNETVLQKAVRRSAQEAG 236

Query: 282 VNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           + K+   H +R   AT   + GA    +    G   V   + YT   DR
Sbjct: 237 IEKTVTCHTLRHSFATNLLEVGADIRTVHELLGHTDVKTTQIYTHVLDR 285


>gi|269926039|ref|YP_003322662.1| integrase family protein [Thermobaculum terrenum ATCC BAA-798]
 gi|269789699|gb|ACZ41840.1| integrase family protein [Thermobaculum terrenum ATCC BAA-798]
          Length = 363

 Score = 86.6 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 36/305 (11%), Positives = 89/305 (29%), Gaps = 35/305 (11%)

Query: 56  PKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFE-SYFDQIIRKSGDFDYRKI 114
              +    P +   T+   +S + +      +   +   ++ S  + I+   G     K+
Sbjct: 46  AAADQGIMPARTRVTVAEFLSHWLEIIK-PQVRPATLADYQNSVRNHIVPALGTIKLTKL 104

Query: 115 TTKHIRS---GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
              H++     + ++  +  +      ++    K A R   +  N       PK   + +
Sbjct: 105 EPAHLQELYSQLLAKGLSAKTVRNIHGTIHKAIKDAARWGMLPRNVADIARPPKVSRQEL 164

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI------- 224
           +  T E ++        G++        + +G R  +        +      +       
Sbjct: 165 QCLTPEQVRLLMQAC-AGTRYEPLLGLAIATGARQGELLGLRWADIDLQRGVVQITRQLT 223

Query: 225 --------KTQKTGTIITVELPD----------GFMKLLAMTPI--GKETFFINNDKQKM 264
                   KT      + V +               + L+       +   F N     M
Sbjct: 224 RQGTFSEPKTSSGKRSVHVPVSTVELLRRHRSLQLQERLSAGDRWQDQGLVFANTLGGPM 283

Query: 265 NATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETY 322
           +A      +     +AG+ +   H +R  SA++    G +   +    G   +    + Y
Sbjct: 284 DARNLIRAWHRILQQAGLPRMPFHSLRHTSASLLLRQGVSPRLIQQRLGHADIAVTLQVY 343

Query: 323 TKGAD 327
               +
Sbjct: 344 AHLVE 348


>gi|326407220|gb|ADZ64291.1| integrase [Lactococcus lactis subsp. lactis CV56]
          Length = 403

 Score = 86.6 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 58/373 (15%), Positives = 116/373 (31%), Gaps = 61/373 (16%)

Query: 13  KERTRHGKIIYYFRKG-------HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
           + +T+ G++ Y  R          G+++R      +        +   +   +       
Sbjct: 8   EYKTKSGEVRYILRGAYIGTDVLTGKQVRTSITGRTKKDIKVKLSRLQNEFIKNGCTKKI 67

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT---KHIRSG 122
           K   T   +++ +         +   + + ++    +I   G +   K+TT   +H  + 
Sbjct: 68  KVLKTFDEVVAAWFDFYKINRKSATVKQTEKNLRLYLIPAFGKYKIDKLTTAILQHQINI 127

Query: 123 VESRKHTP------------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK--- 167
             +    P            S   +  T +  + K+A+    ++ NPCL+V  P  K   
Sbjct: 128 WATIASKPLNGRQARKKGEMSDYKRLYTIINRIMKYAISNGLISSNPCLTVLMPNVKVES 187

Query: 168 -TEGIRPWTKEDMQQFKSFWSEGSQP-------RLAFEFLLYSGLRCSDSCRAGVQHLQN 219
             + I+ +TK  +Q    +    + P       R    FL  +GLR  ++       +  
Sbjct: 188 TKKEIKFFTKSQLQSLFDYLDNQASPQWKMRLLRNLLPFLASTGLRIGEAVALSWSDIDF 247

Query: 220 NIFSIKTQKTGTII-TVELPDGFMKLLAMTPIGKET------------------------ 254
              ++   KT      ++L            I K T                        
Sbjct: 248 KQGTVTVSKTVNDSNQIQLSPKTETSNRTIDIDKSTLNLLSKWQLEIKKEFLKYGNPNQP 307

Query: 255 -FFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYG 312
             F N +   +N+              G+ N   HG R   AT+   AG +   +    G
Sbjct: 308 LLFPNINGSVLNSRLLRNTLLDCFENVGLPNIGFHGFRHTHATLCLSAGMSYKAIQTRLG 367

Query: 313 WKTVDQA-ETYTK 324
             T+    + Y  
Sbjct: 368 HSTLQMTMDIYAH 380


>gi|315171645|gb|EFU15662.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX1342]
          Length = 382

 Score = 86.6 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 60/351 (17%), Positives = 120/351 (34%), Gaps = 45/351 (12%)

Query: 9   PFVTKERTRHG---KIIY-YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64
            +V     + G      Y Y+     R+       ES    A   AL       E  N+ 
Sbjct: 11  KYVFSYSNKKGTFWGYRYPYYNSLKHRKEASKRGFESE--RAANKALLKIQYDLETQNTS 68

Query: 65  --RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIR- 120
               K  T+   I  +   A   + +V+++ + ES     I    G+     +     + 
Sbjct: 69  FIENKQLTIDEWIKVWIPYAQ-DNWSVSTKQNIESAIKFHISPLIGNQKLSSLNKITYKR 127

Query: 121 ----SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
                  +  K+T S+   +   +  +   AV  + +  N     +     +  +R ++K
Sbjct: 128 EFIDKLRQENKYTESTIQTWHKIVMRMINAAVHNQIIPSNTLTGFKF--DLSNNVRSFSK 185

Query: 177 EDMQQFKSFWS-EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ------------NNIFS 223
           +++Q+F +    E  Q ++ F  LL SG+R  +        +              +   
Sbjct: 186 KELQRFVAVLENEDIQTQVIFLTLLKSGMRKGELMGLRWSDIDLTEKYFDINSTRGDYGE 245

Query: 224 IKTQKTGTIITVELPDGFMKLLAMTP--------------IGKETFFINNDKQKMNATQF 269
            K +   +I  V   +  + L+                    K+ F +++    +  ++ 
Sbjct: 246 NKPKTKTSIRKVYFDNSLLTLIKKYKNHEKERLFREGIILSDKDYFILSSRNLPIKQSRI 305

Query: 270 SIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
           +  F+    KA V N + HG+R   AT   +AGA    +    G K ++  
Sbjct: 306 TYMFRLLCEKAEVQNITVHGLRHTHATFLIEAGANIKYVSTRLGHKNINIT 356


>gi|169349643|ref|ZP_02866581.1| hypothetical protein CLOSPI_00381 [Clostridium spiroforme DSM 1552]
 gi|169293718|gb|EDS75851.1| hypothetical protein CLOSPI_00381 [Clostridium spiroforme DSM 1552]
          Length = 316

 Score = 86.6 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 54/312 (17%), Positives = 98/312 (31%), Gaps = 54/312 (17%)

Query: 74  LISEY-RKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRSGVESRKHTP- 130
           L   Y +++A   ++  ++    E     +   K G      I     +      K    
Sbjct: 3   LCQLYSKQNAQRANVKKSTMKQREQLMRLLKEDKLGARSIDTIKPSDAKEWALRMKDKGF 62

Query: 131 --SSAIQFLTSMRVLFKWAVRQEYVAINPC--LSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             ++      S++  F  A++ + V  NP      E  +  T+     T+E  Q   SF 
Sbjct: 63  SYNTINNHKRSLKASFYIAIQDDCVRKNPFDFKLSEVLENDTKEKVALTEEQEQALLSFI 122

Query: 187 SEGSQPRLAFE---FLLYSGLRCSDSCRAGVQHLQ----------------NNIFSIKTQ 227
              +     ++    LL +GLR S+ C   V  +                    + I+T 
Sbjct: 123 KTDNVYHKHYDDVLILLKTGLRISELCGLTVADIDFKNEVVIIDHQLLKSKEQGYYIETP 182

Query: 228 KTGTIIT-VELPDG----FMKLLAMTPIGKET--------FFINNDKQKMNATQFSIWF- 273
           KT + I  V L       F +++   P  +           F+N+  +   A  ++  F 
Sbjct: 183 KTKSGIRQVPLSRETIQAFQRVMKKRPKSEPFVIDGRSNFLFVNHKGKPKVAIDYNALFV 242

Query: 274 -------KAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVD-------QA 319
                  K    K   + + H +R    T  A       +L    G   +         A
Sbjct: 243 RMVKKYNKHHKDKPLPHITPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISITMNWYAHA 302

Query: 320 ETYTKGADRIRL 331
              T  ++  RL
Sbjct: 303 SIDTAKSEVQRL 314


>gi|191172050|ref|ZP_03033594.1| site-specific recombinase, phage integrase family [Escherichia coli
           F11]
 gi|300991779|ref|ZP_07179642.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 200-1]
 gi|190907577|gb|EDV67172.1| site-specific recombinase, phage integrase family [Escherichia coli
           F11]
 gi|300305533|gb|EFJ60053.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 200-1]
 gi|324012989|gb|EGB82208.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 60-1]
          Length = 412

 Score = 86.6 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 56/367 (15%), Positives = 119/367 (32%), Gaps = 38/367 (10%)

Query: 16  TRH---GKIIYYF--RKGHGRRI---RLPYPHESTFI-----------PAYMSALTGSTP 56
            RH   G + +YF  R G GR++   RL   +                 A+++       
Sbjct: 35  VRHSTNGLLTWYFTYRAGTGRQVSPERLRLGNYPDLSLKAAREKAAQCRAWLAEGKNPRY 94

Query: 57  KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT 116
           +  +       P T+K  ++ + +S        +           II + G     K   
Sbjct: 95  ELNHAVQDALAPVTVKEALTYWLESYA-KEKRTDYESLKSRINKHIISQIGAMPLEKCEL 153

Query: 117 KHIRSGVESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV---ERPKRKTEGIR 172
           +H  +  +   K +P SA   L   +   K+  ++ Y   N    +   +  K+     R
Sbjct: 154 RHWLACFDQMAKRSPVSAGFLLQVCKQALKYCRKRRYAISNVLDDMVVGDVGKKAEVSER 213

Query: 173 PWTKEDM-QQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT--- 226
             T +++ +  ++   +   P        L+  G R ++  R+ VQ              
Sbjct: 214 VLTNKELGELLRALDDKIFPPYYSALIRLLIVFGCRTTELRRSEVQEWDFKEMLWTVPKE 273

Query: 227 -QKTGTIITVELPDGFMKLLAMTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGVN 283
             KT   I   +P+  +  +             +   K + +  ++      +  +A   
Sbjct: 274 HSKTKVAIFRPIPESILPFVTQLVEQNRHTGLLLGELKGQSSVAEYGRTAHRRINQA--P 331

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY--TKGADRIRLGIKN-SRRIS 340
            + H +R    T+  D G   H +      +       Y  ++  D  R  +     R+ 
Sbjct: 332 WTLHDIRHTFTTMLNDLGVDPHIVEQLTAHQMPGMQRVYNHSRYLDAKRDALNLWVDRLE 391

Query: 341 SVVDSDD 347
            + ++D+
Sbjct: 392 LLQNNDE 398


>gi|307292243|ref|ZP_07572107.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0411]
 gi|306496749|gb|EFM66302.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0411]
          Length = 348

 Score = 86.6 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 33/276 (11%), Positives = 88/276 (31%), Gaps = 26/276 (9%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
           ++ TT       +        +   +  +++     + +  GD   + +    ++  ++ 
Sbjct: 55  ERTTTFADFFENWIHIIKKNDVKETTFQNYQRTSQVVKKLFGDIQLKDLNDIVVQRKIDK 114

Query: 126 RKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQQF 182
              T    +  + L  ++   + A  + Y+A +    V+ R K   +  R  +  ++++ 
Sbjct: 115 YAETHSRKTTHEVLLKIKTALRDAYARGYLATDFANLVKTRGKVLDKRNRALSITELKKL 174

Query: 183 KSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ----------KTG 230
           +++     +    +     L +G+R  +      + L      ++            KT 
Sbjct: 175 RTYVINHRENEFNILVLLALETGMRRGELLGIRPEDLFEYGIHVRRSLSPTSEDTSLKTK 234

Query: 231 -TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKA--TKAGVNK-SA 286
            +   + +      +L   PI    +F        +   F    K      K  + K + 
Sbjct: 235 NSRRDISINQEVYDILKSVPIKDNGYF-------FDPDGFQQSAKLARLLKKLDIPKTTF 287

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           HG+R   A+           +    G   +   + Y
Sbjct: 288 HGLRDTHASFLFSQDIDIAYVSKRLGHINIQTTQNY 323


>gi|260769653|ref|ZP_05878586.1| integrase [Vibrio furnissii CIP 102972]
 gi|260614991|gb|EEX40177.1| integrase [Vibrio furnissii CIP 102972]
          Length = 347

 Score = 86.6 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 49/331 (14%), Positives = 110/331 (33%), Gaps = 31/331 (9%)

Query: 15  RTRHGKII---YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
           +  H K      Y +   G+R+R  +  +   + A+   +     ++ ++   +K   TL
Sbjct: 7   KDGHKKPWLCECYPKGRTGQRVRKRFATKGEAL-AFEKFIMKEVDEKPWLG-DKKDLRTL 64

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT-- 129
           + L+  + K  H  +L  +++  +      I+ + G+    K T K        RK    
Sbjct: 65  QDLVELWYK-LHGQNLK-SAKKVYPR-LRIIVEELGNPFAIKFTAKDFVHWRSGRKAKHR 121

Query: 130 -----------PSSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKE 177
                        +    L  +R +F   +    +    P  SV++       +  ++ +
Sbjct: 122 HMEPGTWKAISAPTNNLDLRYLRAVFNELISLGEWTQPTPLASVKQIPVNESEMGFFSND 181

Query: 178 DMQQFKSFWSEGSQPR---LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234
           D+       S+  + +   L  +  L +G R S++    +  +     +    K+    T
Sbjct: 182 DITALFDRISKSKRAKEFELVCKICLSTGARISEANNLRLSQITQYKITFVDTKSKKNRT 241

Query: 235 VELPDGF-MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFS 293
           V + +    +L+A    G++    +N          +             ++ H  R   
Sbjct: 242 VPITEKLYNELMAFERTGEKDRLFSN-----CLYGIAYIVDQTFPDLPDGQNTHVFRHTF 296

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324
           A+   +AG     L    G   +     Y  
Sbjct: 297 ASRFMEAGGNILVLQKILGHSDIKMTMRYAH 327


>gi|254885280|ref|ZP_05257990.1| phage integrase [Bacteroides sp. 4_3_47FAA]
 gi|254838073|gb|EET18382.1| phage integrase [Bacteroides sp. 4_3_47FAA]
          Length = 534

 Score = 86.6 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 44/273 (16%), Positives = 86/273 (31%), Gaps = 23/273 (8%)

Query: 75  ISEYRKSAHWGSLAVNSR----ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
           I +Y +   +   +  +      S   ++D I +++ +                S     
Sbjct: 244 IEKYLQDLRYRGYSYATLTSSLRSLHYFYDTIGKQNTEKPITLADIDKCIEMYTSCHTNR 303

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP----WTKEDMQQFKSFW 186
            +   ++  +R    +A  Q +     C +V  P+   E   P    W        +   
Sbjct: 304 HTNKAYMARIRSYLHYATEQGWCQPGVCEAVVLPRIYKEENLPSFMSWNMVQAILQRMKN 363

Query: 187 SEGSQPRLAFE--FLLYS-GLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELP--- 238
           ++G   R  +    LL + GLRCS+     +  +        I+  K G   T  L    
Sbjct: 364 AKGKSARRNYTVVLLLATYGLRCSEVANLKISDIDWRKEQIHIQHAKGGKSQTFPLLHSV 423

Query: 239 -DGFMKLLAMTPIGKET-----FFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRK 291
            +  ++ L              F      + +         + +     + +K  H +R 
Sbjct: 424 GEAIIEYLRFERRNDLYNDSLFFCAKAPFRTITCHAIHDIVRKELHDVSIKHKGPHSLRH 483

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK 324
             AT   + G T  E+    G K++D    Y K
Sbjct: 484 SYATFLINNGQTMKEVGDLLGHKSIDSTRIYAK 516


>gi|118577353|ref|YP_899593.1| phage integrase family protein [Pelobacter propionicus DSM 2379]
 gi|118504858|gb|ABL01340.1| phage integrase family protein [Pelobacter propionicus DSM 2379]
          Length = 318

 Score = 86.6 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 42/295 (14%), Positives = 102/295 (34%), Gaps = 32/295 (10%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVESR 126
           L+  +  Y +     +L+  +R  +    D  +  S    G+     I    +   +  R
Sbjct: 12  LQRWVVAYMQEITNKNLSGRTRDIYAGILDDFVEHSRQFQGELGIEDINRIFLNGYLAER 71

Query: 127 KHT-----PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER--PKRKTEGIRPWTKEDM 179
            +T      ++    +T ++  F +         +     ++   K ++       ++D+
Sbjct: 72  GNTGRRFSATTKKLHITVLKTFFLYITENNDNNHDFEKMFKKMNIKSESNEKPALNEDDV 131

Query: 180 QQFKSFWSEGSQPR----------LAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSI- 224
           Q+  ++  +  + R          L  + +L+ GLR  +     ++ +    +++I+S+ 
Sbjct: 132 QRLLNYLEKIKRARRNQNTNIRNTLLCKIMLFGGLRAVELTHLRLKDMVYDKEDDIYSLL 191

Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIG--KETFFI--NNDKQKMNATQFSIWFKAKATKA 280
              K G   TV +P   ++    T      E + I    +   ++ T           +A
Sbjct: 192 IEGKGGKQRTVYIPRTLIEDEVETLKEEYGEEWLICSTRNGTIVDRTNLYQIITGIYKRA 251

Query: 281 GVNKS-AHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADRIRLGI 333
           GV+ +  H +R   A    +       +    G   +   A+ Y K  +  +   
Sbjct: 252 GVDHTGLHILRHTFARRLVNNNTNLETIRDLLGHSNIAITAKFYAKTNENNKKAA 306


>gi|82544593|ref|YP_408540.1| CP4-57-type integrase [Shigella boydii Sb227]
 gi|81246004|gb|ABB66712.1| putative CP4-57-type integrase [Shigella boydii Sb227]
 gi|320184706|gb|EFW59499.1| Prophage CP4-57 integrase [Shigella flexneri CDC 796-83]
          Length = 413

 Score = 86.6 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 54/333 (16%), Positives = 116/333 (34%), Gaps = 33/333 (9%)

Query: 24  YFRKGHGRRIRLPYP--HESTFIPA------YMSALTGST-----PKREYINSPRKKPTT 70
           Y+R    +RI L +    + +   A      Y + ++  T      K++     R++  T
Sbjct: 47  YYRPSDKKRILLSFGSLDDVSLADARKRRSEYRALISAGTDPQGHEKKKREAEARRQGNT 106

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHT 129
            + + + + +     +LA N+        D  +    G+     +T +     +   K  
Sbjct: 107 FENVAAAWYQVKISQNLAPNTIKDIWRSLDKYVFPFIGNTPIDTLTARRFVEVLTPIKER 166

Query: 130 PS--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVER-----PKRKTEGIRPWTKEDMQQF 182
            +  +  + L  +  +  +A     +  NP ++V +      K+    IRP    ++ Q 
Sbjct: 167 GNLETLKRVLQRVNEVMDYAANSGLIDANPAMNVRKAFPSPVKKHMPTIRPEQLPELMQA 226

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIITVELP 238
            S  +   Q RL  E+ L +  R +++       +  +           K      + L 
Sbjct: 227 LSVSATERQTRLLIEWQLLTVTRPAEASSTRWDEINLDAKQWTIPAGRMKMRRDHVIPLS 286

Query: 239 DGFMKLLAMTPI---GKETFF--INNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFS 293
              M +L         +   F  + + +Q MN+   +   +     AGV  S HG+R   
Sbjct: 287 GQAMAVLEAMKPISHHRNYVFPSLKDPQQPMNSQTANAALRRMGF-AGVLVS-HGLRAIF 344

Query: 294 ATISADAGATAHELMATYGWKTVDQAET-YTKG 325
           +T + + G     + A       ++    Y + 
Sbjct: 345 STAANEEGFEPDVIEAALAHVDTNEVRRAYNRS 377


>gi|83860039|ref|ZP_00953559.1| transposase [Oceanicaulis alexandrii HTCC2633]
 gi|83852398|gb|EAP90252.1| transposase [Oceanicaulis alexandrii HTCC2633]
          Length = 615

 Score = 86.6 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 36/242 (14%), Positives = 83/242 (34%), Gaps = 21/242 (8%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS--SAIQFLTSMRVLFK 145
           +  ++ ++     +     G       +    R  VE R+      +    ++++R  F 
Sbjct: 30  SRETQRNYIRDVGRFAAFLGRPPDTATSEDLRRFQVEQREAGMPIPTMNSVVSALRFFFT 89

Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLR 205
             + +     +    + R K+  +     +++++ +     +       A      +GLR
Sbjct: 90  HTLDR----PDLARRLVRMKQMRKLPVVLSRDEVARLLGATTCLKHQ-AALSVAYGAGLR 144

Query: 206 CSDSCRAGVQHLQNNIFSIKTQ--KTGTIITVELPDGFMKLLAMT-PIGKETFFINNDK- 261
             +     V+ + +    ++ +  K G      LP   + LL     +G+E   +++D  
Sbjct: 145 VGEVAMLKVRDVDSERMLLRVERGKGGQYRNAMLPADLLTLLRQWWKLGREQGVMHHDGW 204

Query: 262 --------QKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATY 311
                   + ++  Q        A  AG+ K  S H +R   AT   + G     + A  
Sbjct: 205 LFPGLHAMKPISTRQLHRIVVEAAQAAGITKRVSPHTLRHSFATHLLEDGTDIRIIQALL 264

Query: 312 GW 313
           G 
Sbjct: 265 GH 266


>gi|332098668|gb|EGJ03634.1| integrase [Shigella boydii 3594-74]
          Length = 262

 Score = 86.6 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 84/220 (38%), Gaps = 24/220 (10%)

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +  + ++    L+ ++ L + A  +E+  ++    ++ P+ K + IR     + Q+    
Sbjct: 14  KPASVATKATHLSFIKALLR-AAEREWKMLDKAPIIKVPQPKNKRIRWLEPHEAQRLIDE 72

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGF 241
             E  +     EF L +GLR S+      Q +         + +  K+   I V L D  
Sbjct: 73  CPEPLKS--VVEFALATGLRRSNIINLEWQQIDMQRRVAWINPEESKSNRAIGVALNDTA 130

Query: 242 MKLLAMTPIGKETFFINNDK--------------QKMNATQFSIWFKAKATKAGVNK-SA 286
            ++L    IG    ++   K              +KM     + W KA   +AG++    
Sbjct: 131 CRVLKKQ-IGNHHRWVFVYKESCTKPDGTKAPTVRKMRYDANTAW-KAALRRAGIDDFRF 188

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           H +R   A+    AG     L    GW++++    Y   A
Sbjct: 189 HDLRHTWASWLVQAGVPLSVLQEMGGWESIEMVRRYAHLA 228


>gi|319896531|ref|YP_004134724.1| hypothetical protein HIBPF01270 [Haemophilus influenzae F3031]
 gi|317432033|emb|CBY80381.1| phage integrase [Haemophilus influenzae F3031]
          Length = 337

 Score = 86.6 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 35/261 (13%), Positives = 73/261 (27%), Gaps = 26/261 (9%)

Query: 83  HWGSLAVNSRIS---FESYFDQIIRKSGDFDYRKITTKHIRSGVESR--------KHTP- 130
            W  +   +        +    +    GD    +   +      + R        K+ P 
Sbjct: 68  EWFDVHGKTLSDCEARLAKLKNLCANLGDPPANEFNAEIFADYRKRRLDGEFSVNKNKPP 127

Query: 131 --SSAIQFLTSMRVLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
             ++  +    +R +F      +++ A NP   V   K +   +    + D+ +      
Sbjct: 128 KEATVNREHAYLRAVFNELKSLRKWTAENPLDGVRLFKERETELAFLYERDIYRLLVECD 187

Query: 188 --EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
               +   L     L +G R S++       +     +    K+    TV +      +L
Sbjct: 188 NSRNADLGLIVRICLATGARWSEAETLTQSQVMPYKITFTNTKSKKNRTVPISKELFDML 247

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAH 305
              P  +   F +          F         +    +  H +R   A+     G    
Sbjct: 248 ---PKKRGRLFNDAY------ESFENAVLRAEIELPKGQLTHVLRHTFASHFMMNGGNIL 298

Query: 306 ELMATYGWKTVDQAETYTKGA 326
            L    G  T++    Y   A
Sbjct: 299 VLKEILGHSTIEMTMRYAHFA 319


>gi|295107671|emb|CBL05214.1| Site-specific recombinase XerD [Gordonibacter pamelaeae 7-10-1-b]
          Length = 356

 Score = 86.6 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 49/332 (14%), Positives = 106/332 (31%), Gaps = 35/332 (10%)

Query: 21  IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRK 80
           +  Y+R   G +    +  +  F     +A+  S  K            T    +  Y  
Sbjct: 14  VQCYYRDARGSK---RHKTKRGFSTEVEAAVWESQFKSLNGG---AMDMTFSEFVEVYAS 67

Query: 81  SAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKH------TPSSA 133
                 +  ++ I+ E    D+++   GD     +    +                P + 
Sbjct: 68  EVK-PRIREHTWITKEYIISDKLVPFFGDMRMCDVRPIDVIRWQNELTEHRDADGKPWAP 126

Query: 134 IQFLTS---MRVLFKWAVRQEYVAINPCLSVERPKRKTEG-IRPWTKEDMQQFKSFWSEG 189
               T    +  +F  A R   +  NP   V++   K  G ++ WTK++  +F     + 
Sbjct: 127 TYLRTVNNQLNAIFNHAERYYGLTDNPVRRVDKIGSKKGGEMQFWTKDEYLRFSEAVMDK 186

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT----------------GTII 233
                AFE L ++G+RC +           +   ++  K+                 ++ 
Sbjct: 187 PLSFHAFELLYWTGIRCGELLALTPSDFMLDSSRLRINKSYQSLRGVDTVTDPKTPKSVR 246

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKF 292
           T+ +P      +A     ++    +     +     +   +     +GV +   H +R  
Sbjct: 247 TIVMPAFLRDEMADFIEMRDDVAPDERLFAVTKHFLAHEMERGCKASGVKRIRVHDIRHS 306

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324
             ++  + G +A  +    G + VD    Y  
Sbjct: 307 HVSLLIEMGFSALAIAERMGHEAVDITYRYAH 338


>gi|258509091|ref|YP_003171842.1| phage-related integrase [Lactobacillus rhamnosus GG]
 gi|257149018|emb|CAR87991.1| Phage-related integrase [Lactobacillus rhamnosus GG]
 gi|259650380|dbj|BAI42542.1| phage integrase [Lactobacillus rhamnosus GG]
          Length = 360

 Score = 86.6 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 59/365 (16%), Positives = 128/365 (35%), Gaps = 47/365 (12%)

Query: 17  RHGKIIYY---FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT--- 70
           + GK+  Y   ++   G+  +L     S F     + L  S  K  Y++  + +      
Sbjct: 6   KRGKVWQYEISYKDLDGKFKKLRK---SGFPRKSDAELAASQVKSFYLDIKQYQAGAITL 62

Query: 71  ---LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE--S 125
                  I  Y+K     S+   + I +E+    I +  G    R +T    +  +   +
Sbjct: 63  SEYFDRWIHLYKK----NSVTAVTFIKYENTLSHIKQLFGGILLRDLTRTLYQERLNIFA 118

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV---ERPKRKTEGIRPWTKEDMQQF 182
           + H P +   F   +R     AV +  + ++P        RP   T+  R    ++ +Q 
Sbjct: 119 QNHAPRTVAAFHKQIRAALLDAVDERIIHLDPTRKAIISGRPISATK--RALDYQEWRQL 176

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSI-------------KTQ 227
                  +  ++       +G+R ++        +   +   SI             KT+
Sbjct: 177 IQGLDTSNTEQMIIYIAAVTGMRYAEVLGLTKSDIDLTSGEISINKTWDYKYHTGFKKTK 236

Query: 228 KTGTIITVELPDG----FMKLLAM-TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
            T ++ +V L           L +  P   +T    ++   + + + +     K    G+
Sbjct: 237 NTSSVRSVVLNPASIMKLAHFLELHNPESSQTPIFASNGHSLVSAEINKVLTQKLKSLGL 296

Query: 283 NK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGIKNSRRIS 340
            + + HG+R   A+I    G +   +    G   +   + TY        L  +++ +I 
Sbjct: 297 PRITFHGLRHTHASILLYQGVSVLSVSKRLGHSNITTTQATYLHVI--KELETQDNEKIL 354

Query: 341 SVVDS 345
           S++ +
Sbjct: 355 SILQA 359


>gi|257066288|ref|YP_003152544.1| integrase family protein [Anaerococcus prevotii DSM 20548]
 gi|256798168|gb|ACV28823.1| integrase family protein [Anaerococcus prevotii DSM 20548]
          Length = 362

 Score = 86.6 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 45/293 (15%), Positives = 88/293 (30%), Gaps = 25/293 (8%)

Query: 57  KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT 116
           + +    P  K  T       + ++            +   + +QII   G+   ++ T 
Sbjct: 51  RIQTPTKPEAKLKTFNDAYELWLETWQTTVKEQTVYKTKSLFKNQIIPYIGNIPLKEFTQ 110

Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP--- 173
              +S +        +        + +  +A     +  NP   ++ PK K         
Sbjct: 111 LQAQSFIIDASKRYKNISNIKIYAKAVLNYAKDLHVIEKNPFDKIKIPKEKVNMQAINKK 170

Query: 174 --WTKEDMQQFK--SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL------------ 217
             +T E+++ F   +   E  Q    F  L ++G+R  ++       L            
Sbjct: 171 NYYTPEELKTFLEITKEKEPLQTYAFFRLLSHTGIRSGEALALEWSDLNTKTNTLTISKS 230

Query: 218 ----QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF 273
               +N    I T KTG    + L       L       + +      + +  +      
Sbjct: 231 ISRDKNGKQIISTTKTGNTRKITLDTETTDTLIKLKETNKKYIFERSGKVVTRSYPLKVL 290

Query: 274 KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
                K  ++K + HG R   ATI    G +   +    G        E Y+ 
Sbjct: 291 NRIIEKNNLHKITVHGFRHTHATILLRMGKSIKYIQERLGHTDPTITLEIYSH 343


>gi|160897058|ref|YP_001562640.1| integrase family protein [Delftia acidovorans SPH-1]
 gi|160362642|gb|ABX34255.1| integrase family protein [Delftia acidovorans SPH-1]
          Length = 375

 Score = 86.6 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 64/360 (17%), Positives = 122/360 (33%), Gaps = 45/360 (12%)

Query: 26  RKGHGRRIRL---PYPHESTFIPAYMSALTGSTPKREYI------NSPRKKP----TTLK 72
           R     R RL   P P          + + G   +  ++      +SPR +      T+ 
Sbjct: 16  RAHGFGRERLELQPTPANIRHAERMRAEILGKIERGTFVLGDYFPDSPRARADVPSMTVG 75

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQI------IRKSGDFDYRKITTKHIRSGVESR 126
            L  E+        L  ++  S++   D            G+F +R +        +   
Sbjct: 76  QLFGEWLDVKK-PELQHSTIHSYQQTIDSYHFDGVRRDLVGNFTFRSLKR-----LLARL 129

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
              P +     + +R + ++  + + +      S+E  +R+     P+T ++++   S  
Sbjct: 130 PANPKTFNNVASVLRQVLEYGYKAKILTEPLHESIEMRRRQKPEPDPFTLDEVEVLLSKM 189

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----------IFSIKTQKTGTIITV 235
                 R  FEF  +SGLR S+        +                 +K  KT  +  V
Sbjct: 190 KA-EAARNYFEFAFFSGLRPSELIALTWSKVDLRSGTVMVDSALTRGRVKGTKTSEVRKV 248

Query: 236 ELP----DGFMKLLAMTPIGKETFFINNDKQKM--NATQFSIWFKAKATKAGV-NKSAHG 288
           ELP    D   +   ++ +     F+     ++         W+K     +G+ ++ A  
Sbjct: 249 ELPGRARDALERQRKVSQLAGGRVFLTVAGGELENTDMPLDSWWKPAMKVSGIRHRDARQ 308

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
            R   AT+   AG T        G        TY+K  D    G +  R++ S + +  P
Sbjct: 309 TRHTYATMMLMAGVTPAYAARQMGHGIEMFLRTYSKWIDGADKGAE-QRKLDSFISASKP 367


>gi|60682799|ref|YP_212943.1| putative integrase [Bacteroides fragilis NCTC 9343]
 gi|60494233|emb|CAH09026.1| putative integrase [Bacteroides fragilis NCTC 9343]
          Length = 403

 Score = 86.6 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 53/316 (16%), Positives = 106/316 (33%), Gaps = 52/316 (16%)

Query: 67  KPTTLKWLISEYRKSA-HWGS--LAVNSRISFESYFDQIIRKSGDFDYRKITTKH----- 118
              T K+L+  Y  +   W    +   +  +++S +  + +  G  + +     H     
Sbjct: 98  SKATGKFLLLPYIDTQIEWKKSIMKNGTAAAYQSTYASLAKYIGKKEVKISQVNHRFVTC 157

Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA----------INPCLSVERPKRKT 168
            R  +     T ++   +L + R L+  AV+   V             PC +V+R     
Sbjct: 158 YRDFLSKNGATENTIGYYLRNFRALYNLAVKDGLVPPCDYPFKEICTKPCKTVKR----- 212

Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS------GLRCSDSCRAGVQHLQNNIF 222
                  +E M +  +  S  S   L     L+       G+   D      +++  N  
Sbjct: 213 ----ALDREQMVKL-ACLSLHSDAELKRSLDLFLFGFYAQGMAFVDIAYLKWKNISGNRI 267

Query: 223 SIKTQKTGTIITVELPDGFMKLLA----MTPIGKETFF------INNDKQKMNATQFSIW 272
             +  K+  +I + +      ++      T   +E  F       N   Q   A   +  
Sbjct: 268 IYRRHKSKQLIQIVITPQIKSIIDEHGNNTNNAEEYVFSVIKNNANEYTQYRTALGRTNR 327

Query: 273 -FKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             K  + K  ++   + +  R   AT++ + GA    + A  G    +    Y K  D  
Sbjct: 328 HLKIISAKLKIDPPLTTYTARHTWATLAREYGAPVSAISAGLGHTKEEMTLVYLKELDLA 387

Query: 330 RLGIKNSRRISSVVDS 345
            L      RI+ +V++
Sbjct: 388 PL-----HRINKMVNN 398


>gi|56552810|ref|YP_163649.1| site-specific tyrosine recombinase XerC [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|56544384|gb|AAV90538.1| integrase family protein [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 307

 Score = 86.6 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 44/283 (15%), Positives = 94/283 (33%), Gaps = 29/283 (10%)

Query: 74  LISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFD--------YRKITTKHIRSGVE 124
           L +++ +   +    + +S  ++ +   + I   G+           +K     IR+ + 
Sbjct: 16  LATQWEQYLQFSLRRSPHSIRAYMATVHRFISFLGNHRGDLIDKNTLQKTDIAEIRAFLA 75

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
            R+ +  +       +  +  +     ++ ++P  +++  + K    RP + ED      
Sbjct: 76  YRRQSGLANSSVAREISGIRAFLR---FIGLDPIPAIKGARVKKGIPRPLSPEDAVALAK 132

Query: 185 FWSEGS-------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237
             SE +       +       L  SGLR S++     + L          K   I  V L
Sbjct: 133 EASEEASEQWIEARDLALLLLLYGSGLRISEALNLTCEILPLQTTLRVVGKRSKIRIVPL 192

Query: 238 PDGFMKLLAM-------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHG 288
            +   + +            G + FF       ++A       +      G++   + H 
Sbjct: 193 LEKVKRAMETYVRLCPYAFSGSQPFFRGAKGGVLSADVLRRTVRKARYHLGLDNKATPHA 252

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           +R   A+     GA    L    G  ++   + YT   D  RL
Sbjct: 253 LRHSFASHLLGRGADLRSLQELLGHASLSSTQIYT-AVDAARL 294


>gi|330898498|gb|EGH29917.1| integrase family protein [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 480

 Score = 86.6 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 45/306 (14%), Positives = 93/306 (30%), Gaps = 27/306 (8%)

Query: 53  GSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYR 112
             +P    + S   KP T K L   Y       ++  ++    +S  + I    G+ D +
Sbjct: 172 ALSPSLSVLPSEASKPLTFKGLSGFYMDELK-DNVQASTMRDVKSTCEAIGAILGELDLK 230

Query: 113 KITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170
             T   +++          PS+  + LT +  +  W V  +Y+A      ++  K     
Sbjct: 231 THTRDDMKNLRAKLLENRKPSTVRKILTRLSTVMDWGVNNDYLAKALTDGLKPTKGAESS 290

Query: 171 IRPWTKEDMQQFKSFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI--- 224
              ++++ ++   +        +  R A    + +G R  +  +     ++         
Sbjct: 291 REAFSQDQVKALMAHAKALPVDAWQRWALSLGVITGARIEELRQLTKADIKQVAGVWVID 350

Query: 225 ------KTQKTGTIIT-VELPDG-----FMKLLAMTPIGKETFFINNDKQKMNATQFSIW 272
                 KT KT   +  + L DG         L          F     Q       +  
Sbjct: 351 INRDDGKTAKTKNALRVIPLTDGAYGFDLQAFLEFVDKADSRLFTLGTGQFSGV--LNGM 408

Query: 273 FKAKAT-KAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK--GADR 328
            +     +A   ++ H +R   A     A        +  G  +   + + Y    G   
Sbjct: 409 LRGVLDLEADRTQTFHSLRHSLAGALKAAEVPVGTAESILGHASGSISYDLYGAGSGVQV 468

Query: 329 IRLGIK 334
            R+   
Sbjct: 469 ARMAEA 474


>gi|330719212|ref|ZP_08313812.1| prophage integrase [Leuconostoc fallax KCTC 3537]
          Length = 373

 Score = 86.6 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 50/299 (16%), Positives = 100/299 (33%), Gaps = 40/299 (13%)

Query: 57  KREYINSPRKKPTTLKWL----ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYR 112
           + +Y    R    T+K L    I  Y+++    +L    R +   +   I+   GD    
Sbjct: 55  ESKYNKKERPTVLTVKALYDIWIDAYQRTVEESTL----RKTMNLFALHILPDWGDVLVS 110

Query: 113 KITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
            I    ++  V + +         + S R L   A++ + +A++P   ++ PK +    +
Sbjct: 111 DIKPIQLQLYVNTLQSKLLRYRVVINSFRRLLSLALKMDMIAVDPFTKIDLPKERRRLDK 170

Query: 173 PWTKEDMQQFKSFWS--------EGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIF 222
           P    D+ +FK F             Q         ++G+R  +      Q     N   
Sbjct: 171 PKQFMDIDEFKRFIDVLDSQYRLINKQAYTLLRLGAFTGMRTEELLALQWQSVDFDNGYI 230

Query: 223 SI-------------------KTQKTGTIITVELPDGFMKLLAMTPIGK-ETFFINNDKQ 262
           S+                   +T +    I  ++     +    T   +   +  N++  
Sbjct: 231 SVVQALGRGLNGGTYVKEPKSRTSRRTLKIDNKMLAVLSEWYEYTAYKEINDYVFNHEGH 290

Query: 263 KMNATQFSIWFKAKATK--AGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
            +   + + W    + K    V  S H +R   AT++ D GAT  ++    G       
Sbjct: 291 TLQILRPNKWLHDVSNKYNVAVGLSMHKLRHTWATLALDRGATVKQVQTYLGHADASIT 349


>gi|315607651|ref|ZP_07882646.1| integrase [Prevotella buccae ATCC 33574]
 gi|315250834|gb|EFU30828.1| integrase [Prevotella buccae ATCC 33574]
          Length = 435

 Score = 86.6 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 54/293 (18%), Positives = 97/293 (33%), Gaps = 27/293 (9%)

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLT 138
           R    + +L+   R   E   D+ ++        +   +  R  ++ R    ++   +L 
Sbjct: 123 RTEGTYLNLSHADRNLHEFVKDKGVQDILIGAITEDLFEEYRFYLKKRGLKGTTINNYLC 182

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WSEGSQPRLA 195
            +  L   AV Q  +  NP  + +  K     IR   K D+ +  +     SE  Q RL 
Sbjct: 183 WLSRLMYRAVSQNIIRCNPFENAKYEKEDKN-IRYLQKYDVARLMAMRMNDSEAEQARLM 241

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQ---NNIFSIK--TQKTGTIITVELPDGFMKLL-AMTP 249
           F F  ++GL  +D      +H+Q   +    I+   QKT     V L      ++     
Sbjct: 242 FIFSCFTGLAIADMETLQYKHIQTAADGQKYIRKERQKTKVEFVVPLHPIAETIISHCRK 301

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKA-------------TKAGV--NKSAHGVRKFSA 294
                     D+Q M        F                    G+    S H  R    
Sbjct: 302 ANHNDLTTGQDEQTMKEKDGDFVFHPDCTRSVMSAKLCIVGKACGISQRLSFHMARHTFG 361

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
           T+S  AG     +    G  ++   + Y +  D      ++  R+ + + S +
Sbjct: 362 TMSLSAGIPIESIAKMMGHASISSTQIYAQVTDCK--ISEDMDRLIAKLSSKE 412


>gi|310779272|ref|YP_003967605.1| integrase domain protein SAM domain protein [Ilyobacter polytropus
           DSM 2926]
 gi|309748595|gb|ADO83257.1| integrase domain protein SAM domain protein [Ilyobacter polytropus
           DSM 2926]
          Length = 283

 Score = 86.6 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 44/259 (16%), Positives = 102/259 (39%), Gaps = 15/259 (5%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HTPSSAIQFLTSMRV 142
              + +S  ++    +         DY ++    + S +E+ K  ++ +S  + L S+R 
Sbjct: 16  KGFSESSIEAYRKDLEDFTVFLMGKDYVEVEDLDVMSFIETMKKEYSENSIYRKLVSLRA 75

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLAFEFL 199
            +K+  ++  V   P   ++  K   +       E++++  +      +G + +L  E L
Sbjct: 76  FYKYLYKKGIVEKLPTEGLKPVKPTVQMPETLEWEEVERIINQCGNQPKGERDKLVIEML 135

Query: 200 LYSGLRCSDSCRAGVQH-LQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFIN 258
           L SGL  S+     +   +      IK  K   +  +E+ +   + +           +N
Sbjct: 136 LQSGLLISEVLEIKISDIISTEYKKIKYVKNNRLHFIEIGNELSEKIKSFVNEDREKVVN 195

Query: 259 ND----KQKMNATQFSIWFKAKATKAGVNKSAHG--VRKFSATISADAGATAHELMATYG 312
           ++     Q +    F   FK    KAG++++ +   +R   A    D+  +  ++     
Sbjct: 196 SEDDFLFQGVTRQNFGARFKKYGQKAGISQNIYPNMLRNTLAKKYLDS--SIDDVKDKMH 253

Query: 313 WKTVDQAETY-TKGADRIR 330
            + ++    Y T+  D+IR
Sbjct: 254 LEKLEGTGVYITRNLDKIR 272


>gi|257090583|ref|ZP_05584944.1| phage integrase [Enterococcus faecalis CH188]
 gi|294619912|ref|ZP_06699288.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium E1679]
 gi|256999395|gb|EEU85915.1| phage integrase [Enterococcus faecalis CH188]
 gi|291593849|gb|EFF25347.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium E1679]
          Length = 380

 Score = 86.6 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 45/309 (14%), Positives = 97/309 (31%), Gaps = 40/309 (12%)

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKH 118
           Y    +    T + L +E+       S+  ++      Y + QI+   G      I+  +
Sbjct: 58  YGVKKKAPDMTFEDLYNEWIAHQR-TSVKASTIAISVRYANNQILPAFGKLKLSNISVPY 116

Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS--VERPKRKTEGIRPWTK 176
            +  V+       S          + ++ V  +Y+  NP     + R K   +  + ++K
Sbjct: 117 CQKVVDEWHSKYESYDYMRKQTAQILRYGVAMQYIDNNPMEKTLLPRKKEYEKNRKFYSK 176

Query: 177 EDMQQFKSFWSE--GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--------------- 219
           E++      + +    +    F  L Y+G+R S+      + +                 
Sbjct: 177 EELNDLLDAFKDFGNMKQYAFFRLLAYTGMRKSEVLALQWKDIDTFNKELHVNKTLAVDE 236

Query: 220 -NIFSIKTQKTGTIITVELPD----------------GFMKLLAMTPIGKETFFINNDKQ 262
                I++ KT     V   D                 ++KL   T   ++  F      
Sbjct: 237 FGNVIIQSPKTRASRRVISLDTETLSILNNWKLQQKEEYLKLGYNTSSKEQHVFTTVKNT 296

Query: 263 KMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-E 320
                  + W +    K  + + + HG R   A++  +AG +   +    G +      +
Sbjct: 297 LYIPNTVNDWLRYILKKYNLPRITPHGFRHTHASLLLEAGESVKVVQQRLGHENSKVTLD 356

Query: 321 TYTKGADRI 329
            Y    +  
Sbjct: 357 IYAHITNNA 365


>gi|168750228|ref|ZP_02775250.1| integrase [Escherichia coli O157:H7 str. EC4113]
 gi|168757272|ref|ZP_02782279.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC4401]
 gi|168770042|ref|ZP_02795049.1| integrase [Escherichia coli O157:H7 str. EC4486]
 gi|168776115|ref|ZP_02801122.1| integrase [Escherichia coli O157:H7 str. EC4196]
 gi|168783005|ref|ZP_02808012.1| integrase [Escherichia coli O157:H7 str. EC4076]
 gi|168800317|ref|ZP_02825324.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC508]
 gi|195938647|ref|ZP_03084029.1| putative integrase [Escherichia coli O157:H7 str. EC4024]
 gi|208805712|ref|ZP_03248049.1| integrase [Escherichia coli O157:H7 str. EC4206]
 gi|208812430|ref|ZP_03253759.1| integrase [Escherichia coli O157:H7 str. EC4045]
 gi|208821448|ref|ZP_03261768.1| integrase [Escherichia coli O157:H7 str. EC4042]
 gi|209397064|ref|YP_002268871.1| integrase [Escherichia coli O157:H7 str. EC4115]
 gi|254791404|ref|YP_003076241.1| putative integrase for prophage CP-933H [Escherichia coli O157:H7
           str. TW14359]
 gi|187768459|gb|EDU32303.1| integrase [Escherichia coli O157:H7 str. EC4196]
 gi|188015555|gb|EDU53677.1| integrase [Escherichia coli O157:H7 str. EC4113]
 gi|188999618|gb|EDU68604.1| integrase [Escherichia coli O157:H7 str. EC4076]
 gi|189355744|gb|EDU74163.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC4401]
 gi|189361030|gb|EDU79449.1| integrase [Escherichia coli O157:H7 str. EC4486]
 gi|189377332|gb|EDU95748.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC508]
 gi|208725513|gb|EDZ75114.1| integrase [Escherichia coli O157:H7 str. EC4206]
 gi|208733707|gb|EDZ82394.1| integrase [Escherichia coli O157:H7 str. EC4045]
 gi|208741571|gb|EDZ89253.1| integrase [Escherichia coli O157:H7 str. EC4042]
 gi|209158464|gb|ACI35897.1| integrase [Escherichia coli O157:H7 str. EC4115]
 gi|254590804|gb|ACT70165.1| putative integrase for prophage CP-933H [Escherichia coli O157:H7
           str. TW14359]
 gi|326342464|gb|EGD66244.1| Phage integrase [Escherichia coli O157:H7 str. 1125]
          Length = 324

 Score = 86.6 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 84/220 (38%), Gaps = 24/220 (10%)

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +  + ++    L+ ++ L + A  +E+  ++    ++ P+ K + IR     + Q+    
Sbjct: 76  KPASVATKATHLSFIKALLR-AAEREWKMLDKAPIIKVPQPKNKRIRWLEPHEAQRLIDE 134

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGF 241
             E  +     EF L +GLR S+      Q +         + +  K+   I V L D  
Sbjct: 135 CPEPLKS--VVEFALATGLRRSNIINLEWQQIDMQRRVAWINPEESKSNRAIGVALNDTA 192

Query: 242 MKLLAMTPIGKETFFINNDK--------------QKMNATQFSIWFKAKATKAGVNK-SA 286
            ++L    IG    ++   K              +KM     + W KA   +AG++    
Sbjct: 193 CRVLKKQ-IGNHHRWVFVYKESCTKPDGTKAPTVRKMRYDANTAW-KAALRRAGIDDFRF 250

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           H +R   A+    AG     L    GW++++    Y   A
Sbjct: 251 HDLRHTWASWLVQAGVPLSVLQEMGGWESIEMVRRYAHLA 290


>gi|309700473|emb|CBI99767.1| prophage integrase [Escherichia coli ETEC H10407]
          Length = 387

 Score = 86.6 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 84/220 (38%), Gaps = 24/220 (10%)

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +  + ++    L+ ++ L + A  +E+  ++    ++ P+ K + IR     + Q+    
Sbjct: 139 KPASVATKATHLSFIKALLR-AAEREWKMLDKAPIIKVPQPKNKRIRWLEPHEAQRLIDE 197

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGF 241
             E  +     EF L +GLR S+      Q +         + +  K+   I V L D  
Sbjct: 198 CPEPLKS--VVEFALATGLRRSNIINLEWQQIDMQRRVAWINPEESKSNRAIGVALNDTA 255

Query: 242 MKLLAMTPIGKETFFINNDK--------------QKMNATQFSIWFKAKATKAGVNK-SA 286
            ++L    IG    ++   K              +KM     + W KA   +AG++    
Sbjct: 256 CRVLKKQ-IGNHHRWVFVYKESCTKPDGTKAPTVRKMRYDANTAW-KAALRRAGIDDFRF 313

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           H +R   A+    AG     L    GW++++    Y   A
Sbjct: 314 HDLRHTWASWLVQAGVPLSVLQEMGGWESIEMVRRYAHLA 353


>gi|294339306|emb|CAZ87662.1| Putative Phage integrase [Thiomonas sp. 3As]
          Length = 459

 Score = 86.6 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 48/358 (13%), Positives = 113/358 (31%), Gaps = 39/358 (10%)

Query: 19  GKIIYYFRKGHGR--RIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76
           G+   + R    +  ++         +  A    +         +     +  T++   +
Sbjct: 17  GRFRAFARIKEMKAAQVFERREEAQIWADATEKRMRAGRWAAPTVKREDARK-TVQDGFA 75

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT------- 129
            Y +S  W   A  +R         +I   G     +++   +R+ +  R+ T       
Sbjct: 76  AYVQSEDWLRKAEVTRRVELRKQLPVIEALGTRYLSELSADDVRNYIAKRRKTRPSRAKK 135

Query: 130 --------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
                   P      + ++  +  +AV + ++  NP   V+RP      +R    E + Q
Sbjct: 136 DDKEARLSPDQIRLEVAALSAMCNFAVERHWMETNPARGVKRPTSNRRTVR-LDDELIGQ 194

Query: 182 FKSFWSEGS--QPRLAFEFLLYSGLRCSDSCRAGVQHLQNN--IFSIKTQKTGTIITVEL 237
             +        +  L F  L  +  R  +   A  +  + N     I   K      + +
Sbjct: 195 ILAHPKVRDDLRAYLYFRLLFSTVCRPGELATARKEWYRANPPQIRIPRTKNEDERAIII 254

Query: 238 PDGFM----KLLAMTPIGKETFFINNDKQK--MNATQFSIWFKAKATKAGVNKS---AHG 288
           P+       + + +        F +  ++K       ++  ++  A    + +     H 
Sbjct: 255 PNSMALSFGRYIELDDTSSPYIFSSAAREKGTWKPFNYAGVWRVLARDLQLRQKGIVPHV 314

Query: 289 VRKFSATISADA-GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345
            R    +   +    +  ++ A  G +T      Y        L  ++SR I + +D+
Sbjct: 315 ARHEGVSRLFERTNLSDGQIAAVSGHRTAQALWRY------KHLRAEHSRGIVNALDN 366


>gi|168789717|ref|ZP_02814724.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC869]
 gi|193063225|ref|ZP_03044316.1| site-specific recombinase, phage integrase family [Escherichia coli
           E22]
 gi|261223701|ref|ZP_05937982.1| putative phage integrase [Escherichia coli O157:H7 str. FRIK2000]
 gi|261255890|ref|ZP_05948423.1| putative phage integrase [Escherichia coli O157:H7 str. FRIK966]
 gi|300823456|ref|ZP_07103586.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 119-7]
 gi|301020189|ref|ZP_07184315.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 69-1]
 gi|301325450|ref|ZP_07218936.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 78-1]
 gi|189370767|gb|EDU89183.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC869]
 gi|192931133|gb|EDV83736.1| site-specific recombinase, phage integrase family [Escherichia coli
           E22]
 gi|300398896|gb|EFJ82434.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 69-1]
 gi|300524074|gb|EFK45143.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 119-7]
 gi|300847748|gb|EFK75508.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 78-1]
 gi|320190202|gb|EFW64852.1| Phage integrase [Escherichia coli O157:H7 str. EC1212]
 gi|325498379|gb|EGC96238.1| site-specific recombinase, phage integrase family [Escherichia
           fergusonii ECD227]
          Length = 387

 Score = 86.6 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 84/220 (38%), Gaps = 24/220 (10%)

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +  + ++    L+ ++ L + A  +E+  ++    ++ P+ K + IR     + Q+    
Sbjct: 139 KPASVATKATHLSFIKALLR-AAEREWKMLDKAPIIKVPQPKNKRIRWLEPHEAQRLIDE 197

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGF 241
             E  +     EF L +GLR S+      Q +         + +  K+   I V L D  
Sbjct: 198 CPEPLKS--VVEFALATGLRRSNIINLEWQQIDMQRRVAWINPEESKSNRAIGVALNDTA 255

Query: 242 MKLLAMTPIGKETFFINNDK--------------QKMNATQFSIWFKAKATKAGVNK-SA 286
            ++L    IG    ++   K              +KM     + W KA   +AG++    
Sbjct: 256 CRVLKKQ-IGNHHRWVFVYKESCTKPDGTKAPTVRKMRYDANTAW-KAALRRAGIDDFRF 313

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           H +R   A+    AG     L    GW++++    Y   A
Sbjct: 314 HDLRHTWASWLVQAGVPLSVLQEMGGWESIEMVRRYAHLA 353


>gi|94985220|ref|YP_604584.1| phage integrase [Deinococcus geothermalis DSM 11300]
 gi|94555501|gb|ABF45415.1| phage integrase [Deinococcus geothermalis DSM 11300]
          Length = 369

 Score = 86.6 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 54/308 (17%), Positives = 102/308 (33%), Gaps = 37/308 (12%)

Query: 70  TLKWLISEY--RKSAHWGSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSG--- 122
           TL  L++ Y   KS+  G  +  +  ++     Q +  +G  +   R +           
Sbjct: 36  TLIDLLNTYIRLKSSRKGRTSALTLKAYAESVRQFLAFTGPPESPSRALNQLSAEDFEVW 95

Query: 123 ---VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI---RPWTK 176
              ++     P++  + L  +R L K  V    +  +P   V  P   T      R  T+
Sbjct: 96  LLHLQEAGLKPNTIKRHLYGVRNLMKALVWANVLKADPSAGVSPPTDPTPAHAKKRALTQ 155

Query: 177 EDMQQFKSF----WSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ- 227
             M+   +       E     S+  L        GLR ++     +  +     ++  + 
Sbjct: 156 AQMRALLALPGELHPEDSVQASRDALLLALGGTLGLRAAEIVGLDLADVDLATGTLTVRG 215

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKET-------FFIN----NDKQKMNATQFSIWFKAK 276
           K G    V LP G   LL      ++T         ++    N   +++         A 
Sbjct: 216 KGGKTRVVPLPAGVKALLQRWLPARQTVNPKVPALLVSLSSLNRGGRLSTDGARFIAHAY 275

Query: 277 ATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLG 332
             + G+       H +R+ + T    A    H +    G  +V  +  Y K  AD  R  
Sbjct: 276 YRQLGLPPEMWGLHTLRRTAGTHLYRATRDLHVVADLLGHASVTTSAIYAKMDADVRREA 335

Query: 333 IKNSRRIS 340
           ++   R+ 
Sbjct: 336 VEALERLQ 343


>gi|289450059|ref|YP_003474822.1| phage integrase, N-terminal SAM domain-containing protein
           [Clostridiales genomosp. BVAB3 str. UPII9-5]
 gi|289184606|gb|ADC91031.1| phage integrase, N-terminal SAM domain protein [Clostridiales
           genomosp. BVAB3 str. UPII9-5]
          Length = 329

 Score = 86.6 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 33/248 (13%), Positives = 77/248 (31%), Gaps = 14/248 (5%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHTPSSAIQFLTSMRVL 143
           +  S   + +  + +  +    + R+I T  +R+ +    + +  +  +       +   
Sbjct: 68  SEKSLTYYRATIESMTTRI-KKNVREIETDDLRTYLTEYQQEKNSSKVTVDNIRRILSSF 126

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203
           F W   + Y+  +P   + + K        +T E +++ +    E  +     + L  +G
Sbjct: 127 FSWLEDENYILKSPARRIHKVKAALTIKDTYTDEALEKMRDSCEE-LRDLALIDILASTG 185

Query: 204 LRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG-----FMKLLAMTPIGKETFFIN 258
           +R  +        +            G+   +   D       +  L          F++
Sbjct: 186 MRVGELVLLNRDDINFEERECVVFGKGSKERMVYFDARTKIHLLTYLQGRTDDNPALFVS 245

Query: 259 NDKQKMNAT--QFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKT 315
                            +    K  + K   H  R+  AT++ D G    +L    G K 
Sbjct: 246 LRAPHERLKIGGVECRLRELGNKLDIEKVHPHKFRRTLATMAIDKGMPIEQLQQLLGHKR 305

Query: 316 VDQAETYT 323
           +D    Y 
Sbjct: 306 IDTTLQYA 313


>gi|146313149|ref|YP_001178223.1| phage integrase family protein [Enterobacter sp. 638]
 gi|145320025|gb|ABP62172.1| phage integrase family protein [Enterobacter sp. 638]
          Length = 336

 Score = 86.6 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 50/282 (17%), Positives = 84/282 (29%), Gaps = 36/282 (12%)

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
           ++   TLK L+  +  SAH  +L    +     +        G+   R    +      E
Sbjct: 51  KEDRRTLKELVDSWY-SAHGITLKDGLKRQLAMH--HAFECMGEPLARDFDAQMFSRYRE 107

Query: 125 SR------------KHTPSSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGI 171
            R            + +P +    L   R +F    R   +   NP  ++ RP R  E  
Sbjct: 108 KRLKGEYARSNRVKEVSPRTLNLELAYFRAVFNELNRLGEWKGENPLKNM-RPFRTEEME 166

Query: 172 RPW-TKEDMQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
             W T + + Q          P L       L +G R S++       L     +    K
Sbjct: 167 MAWLTHDQISQLLGECKRHDHPDLETVVRICLATGARWSEAESLRKSQLAKYKITYTNTK 226

Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA-- 286
                TV +     + L             +DK+    +     F++   + G+   A  
Sbjct: 227 GRKNRTVPISKELYESLP------------DDKKGRLFSDCYGAFRSALERTGIELPAGQ 274

Query: 287 --HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
             H +R   A+     G     L    G   +     Y   A
Sbjct: 275 LTHVLRHTFASHFMMNGGNILVLQRVLGHTDIKMTMRYAHFA 316


>gi|240142448|ref|YP_002966958.1| putative site-specific integrase/recombinase [Methylobacterium
           extorquens AM1]
 gi|240012392|gb|ACS43617.1| Putative site-specific integrase/recombinase [Methylobacterium
           extorquens AM1]
          Length = 365

 Score = 86.6 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 44/240 (18%), Positives = 75/240 (31%), Gaps = 29/240 (12%)

Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
             + +++R  + ++     T +R L ++ + +E+V  +P   V   KR        T  +
Sbjct: 103 YLAHLDARHLSEATIAHRRTVVRSLHRFLMAEEHVGYDPTSLVAPMKRPERLPLVLTIAE 162

Query: 179 MQQFKS-------------FWSEGSQPRLA-FEFLLYSGLRCSDSCRAGVQHLQNNIFS- 223
           + +                +   G   R A FE L  SG R S++       +     + 
Sbjct: 163 VDRLLETAHALARDDTVGLYRQAGYARRAALFEVLYASGTRVSEAVNLPAAAIAPGARAM 222

Query: 224 IKTQKTGTIITVELPDGF-------MKLLAMTPIGKETFF---INNDKQKMNATQFSIWF 273
           I   K G    V L             L A      +T+    + N    +         
Sbjct: 223 IVKGKGGKERLVMLHRRAIEAVEVWRDLAAAYGSVSDTWLFHSVRNGAAPLTRQSALAEI 282

Query: 274 KAKATKAGVN----KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           K  A  AG+      S H +R   A+     GA    +    G   +   E Y     R 
Sbjct: 283 KEAAVAAGIRNPDRVSPHKLRHAFASHLLSNGADLRSIQELLGHADLGTTEIYLHTDTRR 342


>gi|194438148|ref|ZP_03070240.1| site-specific recombinase, phage integrase family [Escherichia coli
           101-1]
 gi|194422812|gb|EDX38807.1| site-specific recombinase, phage integrase family [Escherichia coli
           101-1]
          Length = 387

 Score = 86.6 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 84/220 (38%), Gaps = 24/220 (10%)

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +  + ++    L+ ++ L + A  +E+  ++    ++ P+ K + IR     + Q+    
Sbjct: 139 KPASVATKATHLSFIKALLR-AAEREWKMLDKAPIIKVPQPKNKRIRWLEPHEAQRLIDE 197

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGF 241
             E  +     EF L +GLR S+      Q +         + +  K+   I V L D  
Sbjct: 198 CPEPLKS--VVEFALATGLRRSNIINLEWQQIDMQRRVAWINPEESKSNRAIGVALNDTA 255

Query: 242 MKLLAMTPIGKETFFINNDK--------------QKMNATQFSIWFKAKATKAGVNK-SA 286
            ++L    IG    ++   K              +KM     + W KA   +AG++    
Sbjct: 256 CRVLKKQ-IGNHHRWVFVYKESCTKPDGTKAPTVRKMRYDANTAW-KAALRRAGIDDFRF 313

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           H +R   A+    AG     L    GW++++    Y   A
Sbjct: 314 HDLRHTWASWLVQAGVPLSVLQEMGGWESIEMVRRYAHLA 353


>gi|163855346|ref|YP_001629644.1| integrase/recombinase [Bordetella petrii DSM 12804]
 gi|163259074|emb|CAP41373.1| integrase/recombinase [Bordetella petrii]
          Length = 402

 Score = 86.6 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 52/318 (16%), Positives = 102/318 (32%), Gaps = 32/318 (10%)

Query: 39  HESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRK-------SAHWGSLAVNS 91
            +         A+   +  + Y    ++   TLK     YR+             +A  S
Sbjct: 71  DDPDASHNIHRAIHLLSDFQRYGTVFKQSHATLKGFTKSYRQVFEGFLQHLSAQGVAPGS 130

Query: 92  RISFESYF---DQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSSAIQFLTSMRVLFKWA 147
             ++ S     +  +   G  ++R I  +HI S +ES    + ++    L  ++ LF++A
Sbjct: 131 LRTWRSRLFRLEYFLLHHGIEEFRLIRIQHINSYIESLAGFSSNTVGSTLRILKQLFQYA 190

Query: 148 VRQEYV--AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLAFEFLLY 201
               +   + +  + + R +R+      ++  + ++  S        G +    F  L  
Sbjct: 191 CSNGFHVESFDNAIPIVRRQRRQRLPTVFSVGETEKILSAIDRSNALGKRNYAIFLLLAR 250

Query: 202 SGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLL------AMTPIGKE 253
            GLR SD       H     N+ SI  QKT   + + + D     +              
Sbjct: 251 MGLRISDVRGLMFHHFDWSRNVISIVQQKTKKPVDLPIMDEVGWAIIDYLRNGRPHSECP 310

Query: 254 TFFINNDKQKMNATQ-FSIWFKAKATKAGVN------KSAHGVRKFSATISADAGATAHE 306
             FI +       T            +A ++      +  H +R   AT           
Sbjct: 311 LVFIKHIAPFDGLTSALHQQMLQYLRRADIHVPANKPRGVHSLRHSLATTLLQKQVPIQT 370

Query: 307 LMATYGWKTVDQAETYTK 324
           +  T G   +     Y +
Sbjct: 371 ISHTLGHLDIGSTSGYVQ 388


>gi|298253182|ref|ZP_06976974.1| site-specific recombinase XerD [Gardnerella vaginalis 5-1]
 gi|297532577|gb|EFH71463.1| site-specific recombinase XerD [Gardnerella vaginalis 5-1]
          Length = 298

 Score = 86.6 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 27/261 (10%), Positives = 83/261 (31%), Gaps = 10/261 (3%)

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
           +  P + +  ++ + +         ++         ++ R   +     IT + +     
Sbjct: 28  KLLPNSWETYVTHWLEYLEASGYTEDTIRCRYYKISRLARLL-NQPPEDITGQQLVELFA 86

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
            +     +   + +++R  + + + +E + +NP + + + +++     P     ++   +
Sbjct: 87  HQDWKRETRKGYSSTIRSFYSYMIEEEIIDVNPTVKLPKIRKEYAIPHPCPDYIIRGALA 146

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS---IKTQKTGTIITVELPDGF 241
                 +           GLR S+  +     +         +   K     TV +    
Sbjct: 147 RVRGNKEYEAMLRLGAECGLRRSEIAQVSSSDIMMLNTHPQLLVHGKGRKERTVPIAPDL 206

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAG 301
            +++A         F       + A+  +      +   G   S H +R    T + ++ 
Sbjct: 207 AQIIAN---KHGYMFPGRWTGHVEASYIAH---HISQLLGNGYSTHSLRHRYDTKAYEST 260

Query: 302 ATAHELMATYGWKTVDQAETY 322
                +    G  +V+  + Y
Sbjct: 261 HDLLLVSKLLGHASVETTQIY 281


>gi|261819964|ref|YP_003258070.1| integrase [Pectobacterium wasabiae WPP163]
 gi|261603977|gb|ACX86463.1| integrase family protein [Pectobacterium wasabiae WPP163]
          Length = 374

 Score = 86.6 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 81/239 (33%), Gaps = 20/239 (8%)

Query: 97  SYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWA-VRQEYVAI 155
            + D+I     D    +       +    +  + ++    L  +  L+  A V       
Sbjct: 46  RHMDEISSV--DIAGYRDDRLAQINPRTKKSISGNTVRLELALLSALYNLAKVEWGTCTS 103

Query: 156 NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAG 213
           NP   V +P   +  +R  T ++ ++  + +  G +P L   F   + + +R  +     
Sbjct: 104 NPVEHVRKPAVSSGRVRRLTSQE-ERGLTRYFRGKKPELLAIFRLAIETAMRQGEILSLR 162

Query: 214 VQHLQ--NNIFSIKTQKTGTIITVELPDG----FMKLLAMTPIGKETFFINNDKQKMNAT 267
            +++     I  +   K G+   V L         ++  +        F         ++
Sbjct: 163 WENIDLRLGIAHLPLTKNGSARDVPLSSKARLVLKEIGELGRDDTGNVFT------YTSS 216

Query: 268 QFSIWFKAKATKAGV-NKSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTK 324
            F   ++       + +   H +R  + +   + G     E+ A  G K+++  + YT 
Sbjct: 217 GFKSAWRIALQSLSINDLHFHDLRHEAISRLFELGTLNVMEVAAISGHKSMNMLKRYTH 275


>gi|332187766|ref|ZP_08389500.1| phage integrase, N-terminal SAM-like domain protein [Sphingomonas
           sp. S17]
 gi|332012116|gb|EGI54187.1| phage integrase, N-terminal SAM-like domain protein [Sphingomonas
           sp. S17]
          Length = 292

 Score = 86.6 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 37/279 (13%), Positives = 84/279 (30%), Gaps = 22/279 (7%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQI-----------IRKSGDFDYRKITTKHIRS 121
           LI++Y +        + ++  ++ +  +++           +             +   +
Sbjct: 4   LIADYYRHLTVDLRRSDHTVRAYVATAERLTGFLTRHWGSEVDAGALSRITATDLRAYLA 63

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
                  T +S  + L+++R   ++A  +      P      P+ +         ED+ +
Sbjct: 64  FRRGEGLTAASTARELSAVRTFLQFAGIEPPALKGPRRKRSMPRPQAPADIIALAEDVAE 123

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241
             +     ++       L  +GLR  ++       L          K      V L    
Sbjct: 124 DAAEPWIAARDWAVLLLLYGAGLRIGEALALPAAILPLGETLRVLGKRDKTRIVPLLPQV 183

Query: 242 MKLLAMTPI-------GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292
            + +            G+E  F       ++        +    + G+    + H +R  
Sbjct: 184 REAIERYAAQMPFAVEGREPLFRGAKGGPLSPAIIRRSVRGARERLGLGARTTPHALRHS 243

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            AT     GA   +L    G  ++   + YT   D  RL
Sbjct: 244 FATHLLGRGADLRQLQELLGHASLSSTQIYT-AVDAARL 281


>gi|300921984|ref|ZP_07138130.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 182-1]
 gi|300421654|gb|EFK04965.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 182-1]
          Length = 387

 Score = 86.6 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 84/220 (38%), Gaps = 24/220 (10%)

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +  + ++    L+ ++ L + A  +E+  ++    ++ P+ K + IR     + Q+    
Sbjct: 139 KPASVATKATHLSFIKALLR-AAEREWKMLDKAPIIKVPQPKNKRIRWLEPHEAQRLIDE 197

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGF 241
             E  +     EF L +GLR S+      Q +         + +  K+   I V L D  
Sbjct: 198 CPEPLKS--VVEFALATGLRRSNIINLEWQQIDMQRRVAWINPEESKSNRAIGVALNDTA 255

Query: 242 MKLLAMTPIGKETFFINNDK--------------QKMNATQFSIWFKAKATKAGVNK-SA 286
            ++L    IG    ++   K              +KM     + W KA   +AG++    
Sbjct: 256 CRVLKKQ-IGNHHRWVFVYKESCTKPDGTKAPTVRKMRYDANTAW-KAALRRAGIDDFRF 313

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           H +R   A+    AG     L    GW++++    Y   A
Sbjct: 314 HDLRHTWASWLVQAGVPLSVLQEMGGWESIEMVRRYAHLA 353


>gi|146311915|ref|YP_001176989.1| phage integrase family protein [Enterobacter sp. 638]
 gi|145318791|gb|ABP60938.1| phage integrase family protein [Enterobacter sp. 638]
          Length = 372

 Score = 86.6 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 56/317 (17%), Positives = 101/317 (31%), Gaps = 36/317 (11%)

Query: 49  SALTGSTPKREYINSPRKKPT---TLKWLISEYRK----SAHWGSLAVNSRISFESYFDQ 101
           +A       R+   SP+       +LK  I  Y K    S   G L+V      +   + 
Sbjct: 60  AAAEAEHYLRQIDESPKATAQRGISLKAWIERYLKIQKQSLDAGDLSVKRYSEKKRMAEL 119

Query: 102 IIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAI--NP 157
           + R+ G    + +  K     ++        SSA+        +F  A     V    NP
Sbjct: 120 LSRRLGSRPMKSLEVKDFAVLLDEYLDAGHASSALCNRVVWADIFTEAQHAGEVPPGWNP 179

Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217
             S ++P  K    R  + ++ +   +   +      A    L +G R  D        +
Sbjct: 180 PGSTKKPSVKVTRSR-LSLDEWKLILAQIPQDRYSHKAMLLALVTGQRREDIANMKFSDI 238

Query: 218 QNNIFSIKTQKTGTIITVELP-------DGFMKLLAMTPIGKETFFINNDKQKMNATQ-- 268
           ++    I+  KTG+ I + L             ++        + F+ + K+   A    
Sbjct: 239 KDGYLHIEQSKTGSRIALPLNLCCEAIGLTLEDVIRRCRDRFISPFLVHGKRNNTAKPVN 298

Query: 269 ---FSIWFKAKATKAGVN-------KSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
               S  F      AG+         + H  R   +           ++    G KT   
Sbjct: 299 LILMSKEFATARDAAGIKPPAGKTPTTFHEQR-SLSERLYRVQGIDTKI--LLGHKTQST 355

Query: 319 AETYT--KGADRIRLGI 333
            + Y   +G + I+L I
Sbjct: 356 TDRYNDDRGKEWIKLAI 372


>gi|33603112|ref|NP_890672.1| phage-related integrase [Bordetella bronchiseptica RB50]
 gi|33568743|emb|CAE34501.1| phage-related integrase [Bordetella bronchiseptica RB50]
          Length = 424

 Score = 86.6 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 55/338 (16%), Positives = 102/338 (30%), Gaps = 42/338 (12%)

Query: 39  HESTFIPAYMSALTGSTPKREYINSPRKKPT--TLKWLISEYRKSAHWG--SLAVNSRIS 94
            +     A    L         +   R++    TL+ ++ +Y ++      +L  +S+  
Sbjct: 68  TDEARKRALARLLEMHDGMNPQVERKRRQAQGVTLREVMEDYVENKRTKHGTLRDSSQAD 127

Query: 95  FESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT-PSSAIQFLTSMRVLFKWAVRQE-- 151
            +    Q +    D     IT +           T P++A Q   ++R L  WA      
Sbjct: 128 IKRCVTQHLADWADKPVASITREACVKRFRELSATAPTTANQVFRNLRALCNWARETNVA 187

Query: 152 ------YVAINPC----LSVERPKRKT-EGIRP-------WT---KEDMQQFKSFWSEGS 190
                  + INP      SV   K  T E   P       W    +    Q  +     +
Sbjct: 188 PDGSYPILPINPVVQAFKSVTWNKEVTREEFVPLAKVGAVWNMLAERSNAQIYTTADV-T 246

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGFMKLLA 246
              L    +L +G R  +      + ++ +     F+    K    +T+ L      LLA
Sbjct: 247 AAHLVMFLIL-TGARIGEGSALHWKDVRLDDEVPSFTFTQTKNHNEVTIPLSTQLHALLA 305

Query: 247 ----MTPIGKETFFINNDKQ--KMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADA 300
                    +E  F +                 +  +  AG++   H +R+    I+ + 
Sbjct: 306 ARYSARRPDEEYVFPSRTGTREPHMQDARGTMQRV-SKIAGLHLHNHDLRRTFLAIAIEC 364

Query: 301 GATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSR 337
           G    +              + YT+  D   L     R
Sbjct: 365 GVEMWKAEILTNHLPQTVTLKHYTQTRDLRYLQADTQR 402


>gi|324114905|gb|EGC08871.1| phage integrase [Escherichia fergusonii B253]
          Length = 387

 Score = 86.6 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 84/220 (38%), Gaps = 24/220 (10%)

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +  + ++    L+ ++ L + A  +E+  ++    ++ P+ K + IR     + Q+    
Sbjct: 139 KPASVATKATHLSFIKALLR-AAEREWKMLDKAPIIKVPQPKNKRIRWLEPHEAQRLIDE 197

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGF 241
             E  +     EF L +GLR S+      Q +         + +  K+   I V L D  
Sbjct: 198 CPEPLKS--VVEFALATGLRRSNIINLEWQQIDMQRRVAWINPEESKSNRAIGVALNDTA 255

Query: 242 MKLLAMTPIGKETFFINNDK--------------QKMNATQFSIWFKAKATKAGVNK-SA 286
            ++L    IG    ++   K              +KM     + W KA   +AG++    
Sbjct: 256 CRVLKKQ-IGNHHRWVFVYKESCTKPDGTKAPTVRKMRYDANTAW-KAALRRAGIDDFRF 313

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           H +R   A+    AG     L    GW++++    Y   A
Sbjct: 314 HDLRHTWASWLVQAGVPLSVLQEMGGWESIEMVRRYAHLA 353


>gi|319891831|ref|YP_004148706.1| Integrase [Staphylococcus pseudintermedius HKU10-03]
 gi|317161527|gb|ADV05070.1| Integrase [Staphylococcus pseudintermedius HKU10-03]
          Length = 349

 Score = 86.6 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 45/279 (16%), Positives = 90/279 (32%), Gaps = 28/279 (10%)

Query: 78  YRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTK---HIRSGVESRKHTPSSA 133
           +        L   +R   E+ +   I  K G     KIT +     R  +    ++ +SA
Sbjct: 64  FYHYLDNSDLRPKTRKRKENEYKLHIKPKFGHIKMNKITQQQCQEFRKYLMDNINSFNSA 123

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
               +  +V+  +A +   + ++P +S++   R         +E+ +       E    R
Sbjct: 124 RTIWSGFKVVINYAKKYFGLRVDPTISIKPIPRTKPKPNFMMREEFEDRIKEVEE-QDYR 182

Query: 194 LAFEFLLYSGLRCSDSCRAGVQH---------------LQNNIFSIKTQKTGTIITVELP 238
             F  + Y+GLR  ++                      + N     + +   +   V LP
Sbjct: 183 ELFTLMFYTGLRVGEAMALVWTDYNKYKKEISINKTMDISNRSIYPRPKTDSSEDIVPLP 242

Query: 239 ----DGFMKLLAMTPIGKETFFINNDK--QKMNATQFSIWFKAKATKAGVNKSAHGVRKF 292
               +   +         + F   N      +    +S   K    KA  N S H +R  
Sbjct: 243 KFINEMLSERYQREKQMNKYFDEQNYFIFGGLAPKHYSHVHKKF-NKAFPNYSIHALRHS 301

Query: 293 SATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIR 330
            A+  A+ G     L +      + +   TY+    + +
Sbjct: 302 YASYLANNGVDIFVLQSLMRHAQITETMGTYSHLYTQKK 340


>gi|291514130|emb|CBK63340.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
          Length = 400

 Score = 86.6 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 49/310 (15%), Positives = 105/310 (33%), Gaps = 32/310 (10%)

Query: 58  REYINSPRKKPTTLKWL---ISEYRKSAHWGSLAVNSRISFESYFD---QIIRKSGDFDY 111
           +E I+ P K   T+  L   I    +       A +    + S       +     D D 
Sbjct: 94  KEQISKPVKA-VTVGELFEQIIRELQDERRTGYATSVEQVYRSLLKFNKHLSVYFSDID- 151

Query: 112 RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEY--VAINPCLSVERPKRKTE 169
             +  K     +  +    ++      ++R++F  A+ + Y  +   P  S +  K   E
Sbjct: 152 -HLWLKRYELWLRRQGRAENTIGVRFRTLRMVFNQAIERGYAKMEQYPFKSYKVGKLHAE 210

Query: 170 GI-RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS------GLRCSDSCRAGVQHLQNNIF 222
              R  +K +++    F  EG      F   L+S      G+  +D      Q++ +   
Sbjct: 211 TPKRAISKTEVKAVMDFPCEGRDFYTRFAIDLFSFSYLMGGINFADMANLTRQNIVDGRL 270

Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFF-------------INNDKQKMNATQF 269
             + QKTG ++ + +    M+++     G    F             +N   + +     
Sbjct: 271 VYRRQKTGKLLNLPIHSRAMEIIESYASGNIYLFPIYSKEHKTIQQKLNRHHKVITKVNR 330

Query: 270 SIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           ++    +  K  +  + +  R   AT+   AG     +  + G  +    + Y    +  
Sbjct: 331 ALAEIGRELKIPIKLTTYVARHSYATVLKRAGVPTSIISESLGHSSERVTQIYLDSFENE 390

Query: 330 RLGIKNSRRI 339
           R+  +  R +
Sbjct: 391 RM-DEAMRNL 399


>gi|330464887|ref|YP_004402630.1| integrase family protein [Verrucosispora maris AB-18-032]
 gi|328807858|gb|AEB42030.1| integrase family protein [Verrucosispora maris AB-18-032]
          Length = 406

 Score = 86.6 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 65/382 (17%), Positives = 111/382 (29%), Gaps = 63/382 (16%)

Query: 17  RHG-KIIYYFR---KGHGRRIRL--PYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
           RHG    +  R        R R          F      A TG+  + +   S R    T
Sbjct: 23  RHGQGKRWRVRFADAAGDPRTRFFERKADAEAFDA---RARTGAAEESKVQQSARLL--T 77

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KH 128
           L+     +R S   G      +    +    +    GD   R I    +   +  R  + 
Sbjct: 78  LRDYGDRWRLSREVGWALETRKRVESNLRCHLYPAFGDRPLRAINLTSVLEWLTRRLAEG 137

Query: 129 TPSSAIQF-LTSMRVLFKWAVRQEYVAINPCLSVERPK--RKTEGIRPWTKEDMQQFKSF 185
           TPS++++     +  +   AV  + +  NPC  V+  +  R       W   + +     
Sbjct: 138 TPSTSLKLYFELLDTVLNAAVTDKIIPDNPCDGVKLSQVLRGYSRAPKWVPTEREVLTLL 197

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRA--GVQHLQNNIFSIKTQ---------------- 227
               ++ R A       G R  ++     G + +      +                   
Sbjct: 198 DVVPARYRAAIWLGAGQGYRLGEALGVEDGPRCIDQERSELHVAQQLRYAPRQHDGFYLS 257

Query: 228 --KTGT------------------IITVELPDGFMKLLAMTPIGKET--FFINNDKQKMN 265
             K G+                       +P   + L A +P+ +     F         
Sbjct: 258 EPKAGSSGTLDLDPVVGQVLAEHVREFPPVPVELVDLTAGSPVRRSVPLLFTTTRGNPFT 317

Query: 266 ATQFSIWFKAKATKAGVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ET 321
              +S  +      AG  K   + H +R F AT      A   E+      KT+    ET
Sbjct: 318 DRTWSREWADWRAAAGWPKEHGTFHALRHFFATTLITNHAEPQEVQRMLRHKTLRITLET 377

Query: 322 YTK---GADRIRLGIKNSRRIS 340
           Y       DR R  + +  R +
Sbjct: 378 YVHWWPKRDRSRGIVGSVLRSA 399


>gi|317487235|ref|ZP_07946033.1| phage integrase [Bilophila wadsworthia 3_1_6]
 gi|316921525|gb|EFV42813.1| phage integrase [Bilophila wadsworthia 3_1_6]
          Length = 352

 Score = 86.6 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 39/265 (14%), Positives = 82/265 (30%), Gaps = 25/265 (9%)

Query: 87  LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES---RKHTPSSAIQFLTSMRVL 143
            ++ +   +  Y  +++          +T + + S +     +   P S    + +++  
Sbjct: 67  QSLATVELYCRYVVELL-NYARKPSFSVTARDVESYIRQCRMKGLKPRSVNTIIGALKSY 125

Query: 144 FKWAVRQEYVAINPCLSVERPK------RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE 197
           FK       +A+NP   +++ K               ++ +M       +E   PR    
Sbjct: 126 FKRLADTGAIALNPTAFIKKRKDGAGISLPGNLTHSLSESEMLLLFDRLAEHGAPRRDIL 185

Query: 198 FL---LYSGLRCSDSCRAGVQHL---QNNIFSIKTQKTGTIITVELPDGFMKLLA----- 246
            L     +GLR  ++     + +   Q   +     K      + LPD   + L      
Sbjct: 186 LLKTLFMTGLRGEEAVSLCWKDVTVWQGQRYFNVLGKGSKERRIYLPDEIDEGLNEYGKL 245

Query: 247 MTPIGKETFF--INNDKQKMNATQFSIWFKAKATKA--GVNKSAHGVRKFSATISADAGA 302
                 +  F  +    +++         K   T      + S H  R    T  A  G 
Sbjct: 246 TGTSPNQPIFGNLRKPSRRIGRHALYHMVKKWLTTLMNRPDVSPHWFRHSCFTYLASKGV 305

Query: 303 TAHELMATYGWKTVDQAETYTKGAD 327
               + A  G  ++D    Y + A 
Sbjct: 306 RLESIQALAGHASIDTTMLYNEAAQ 330


>gi|212693707|ref|ZP_03301835.1| hypothetical protein BACDOR_03227 [Bacteroides dorei DSM 17855]
 gi|237707923|ref|ZP_04538404.1| tyrosine type site-specific recombinase [Bacteroides sp. 9_1_42FAA]
 gi|237723463|ref|ZP_04553944.1| tyrosine type site-specific recombinase [Bacteroides sp. D4]
 gi|265758458|ref|ZP_06090985.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_33FAA]
 gi|212663728|gb|EEB24302.1| hypothetical protein BACDOR_03227 [Bacteroides dorei DSM 17855]
 gi|229438167|gb|EEO48244.1| tyrosine type site-specific recombinase [Bacteroides dorei
           5_1_36/D4]
 gi|229458059|gb|EEO63780.1| tyrosine type site-specific recombinase [Bacteroides sp. 9_1_42FAA]
 gi|263233416|gb|EEZ19072.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_33FAA]
          Length = 386

 Score = 86.6 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 39/260 (15%), Positives = 86/260 (33%), Gaps = 30/260 (11%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVESRKHTPSSAIQFLTSMR 141
             L  +++ +  +    +       ++  +T          +    +  ++  + +  ++
Sbjct: 117 SQLKDSTKRNHLTTISLLQSFKPTIEFEDLTYNFVTDFEKFLYDSDYQTNTVAKHMKHLK 176

Query: 142 VLFKWAVRQEYVAINP-CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG-----SQPRLA 195
                A+ + Y+  N       + K K         E+M++ +     G          A
Sbjct: 177 SFVNAAINKGYIDPNNYAFRRYKIKMKEGKHVFLLPEEMKKLEEVSLIGRNSCLEHTLDA 236

Query: 196 FEFLLYSGLRCSDSCRAGVQHL--QNN--IFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251
           F F  Y+GLR SD      +++   +        + KTG  + + L        ++   G
Sbjct: 237 FLFCCYTGLRYSDFVSLNEKNIVKMDGKLWLIFDSVKTGAEVKLPL--------SLLFEG 288

Query: 252 KETFFINNDKQKMNA-------TQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302
           K    +   + K ++       +  +         A +NK  S H  R  +AT+    GA
Sbjct: 289 KALTLLQKYQGKWSSFFSIKNNSSVNKELIRIGKLARINKHFSFHSARHTNATLLIYKGA 348

Query: 303 TAHELMATYGWKTVDQAETY 322
               +    G K +   + Y
Sbjct: 349 NITTVQKLLGHKNLATTQIY 368


>gi|152987232|ref|YP_001350376.1| prophage CP-933T integrase [Pseudomonas aeruginosa PA7]
 gi|150962390|gb|ABR84415.1| integrase for prophage CP-933T [Pseudomonas aeruginosa PA7]
          Length = 371

 Score = 86.6 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 46/318 (14%), Positives = 89/318 (27%), Gaps = 30/318 (9%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87
             G RIR     ++  +      + G   K E+   P++    L  L+  +  + H  +L
Sbjct: 20  RDGPRIRRKVKSKNEAMHLERRIM-GDGSKGEFEKKPKRDERRLSELVGLWF-TMHGNTL 77

Query: 88  AVNSRISFE------SYFDQIIRKSGDFDYRKITTKHIRSGVESRK----------HTPS 131
               +   E         D ++       +       I       K            P 
Sbjct: 78  KQGDKRRREMLTTVARIGDPMVCTFTAEMFADYRAARIAGKWGRLKTGSGKKKGQAAKPV 137

Query: 132 SA---IQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            A      L  +R +F    R E +   NP   V   K+    +   ++E +    +   
Sbjct: 138 GAKTLNHELVHLRAMFNELERLEKWTGENPLAKVRALKQDETEMGYLSREQIPLLLAKLD 197

Query: 188 EG-SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
           +  S   +     L +G R S++       +++        K+     V +     K L 
Sbjct: 198 QHPSTVGMVARVCLATGARWSEAMNLTPLQVRDGRIHFVRTKSARNRAVPISAELQKSLE 257

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHE 306
                + ++             F +       +    +  H +R   A+     G     
Sbjct: 258 GALPWRSSY-------SATYKAFELAVAELDLQLPKGQLTHVLRHTFASHYMMNGGDILT 310

Query: 307 LMATYGWKTVDQAETYTK 324
           L    G  T+     Y  
Sbjct: 311 LQRVLGHATLQMTMRYAH 328


>gi|221067995|ref|ZP_03544100.1| hypothetical protein CtesDRAFT_PD3333 [Comamonas testosteroni KF-1]
 gi|221068058|ref|ZP_03544163.1| hypothetical protein CtesDRAFT_PD3396 [Comamonas testosteroni KF-1]
 gi|220713018|gb|EED68386.1| hypothetical protein CtesDRAFT_PD3333 [Comamonas testosteroni KF-1]
 gi|220713081|gb|EED68449.1| hypothetical protein CtesDRAFT_PD3396 [Comamonas testosteroni KF-1]
          Length = 352

 Score = 86.6 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 50/338 (14%), Positives = 99/338 (29%), Gaps = 43/338 (12%)

Query: 23  YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYR--- 79
           +Y+R   GR  R+               +  +  +    NSP     T  + + ++    
Sbjct: 15  FYYRHRDGRWERMGTD------------VRAAKERAAIYNSPADNYGTTAYWLDQFLVDC 62

Query: 80  -KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQF 136
            +      LA  +   +    + +    G      I   H+++ +++         A + 
Sbjct: 63  QQRVSIKDLAPRTLSDYTKDSEPLKVFFGAMLPEHIEPHHVQAYLDAGSAAERGVRANRE 122

Query: 137 LTSMRVLFKWAVRQEY---VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
              +     W +R      + INPC+     +  +E  R       +  + +     Q R
Sbjct: 123 KACLSSCLSWLIRTNKCPGLKINPCMQKSGTRENSEKKRDRYVTHQEYQEVYALAWPQVR 182

Query: 194 LAFEFLLYSGLRC-SDSCRAGVQ------HLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
           +  E    +  R  SD      +      H  N I + +  KTGT + + + +G  KL+ 
Sbjct: 183 VLMELTYRTLQRPESDIIYWTPKVLARDPHTGNRIITFEQGKTGTRLKIAMTEGLEKLIN 242

Query: 247 MT----PIGKETFFINNDKQKMNATQFSIWFKAKATKAG-VNKS----------AHGVRK 291
                 P   +                +         A  +  +             ++ 
Sbjct: 243 RAVGTNPHMDQPLVHTRAGTGYTYGGINSMLGKAIRTANEIRATKNIPPMASFGFRDLKG 302

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             AT    AG    ++    G       E Y K   R 
Sbjct: 303 KGATDMWLAGTPIEQIQLLCGHSDKATTERYIKARWRA 340


>gi|89894954|ref|YP_518441.1| hypothetical protein DSY2208 [Desulfitobacterium hafniense Y51]
 gi|89334402|dbj|BAE83997.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 466

 Score = 86.6 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 43/243 (17%), Positives = 76/243 (31%), Gaps = 35/243 (14%)

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE 197
           T +   F  AV   ++  NP   V    ++   I+ W KE M  +     +  +   AF 
Sbjct: 169 TVISSAFDQAVTSGHLEKNPASGVRISNKRRPKIKIWNKEQMALYLKAIKK-DRLYAAFV 227

Query: 198 FLLYSGLRCSDSCRAGVQHLQ-------NNIFSIKTQK-----------TGTIITVELPD 239
               SGLR S+        +             +++ K                 V   D
Sbjct: 228 TDSKSGLRKSELLALRWSDIDFSTGLTKIERGWVRSPKGTLYLSDLKSENSERTLVFSTD 287

Query: 240 GFMKLLAMTPIGKE-------------TFFINNDKQKMNATQFSIWFKAKATKAGVNK-S 285
               LL       E               F   D   +N + F+        KA + + S
Sbjct: 288 LLKVLLEHKSRQDEEKKTAGKNYIDNGLVFCREDGSYINPSTFTRRHYDLTAKAKLPRIS 347

Query: 286 AHGVRKFSATISADAGA-TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
            H +R   +T   ++G     ++    G K +     Y       R+  K S  I +++ 
Sbjct: 348 VHALRHSISTALLESGKVDLKQIQEMLGHKDISTTGNYYTDV-LERMKQKTSELIDNLIQ 406

Query: 345 SDD 347
           +++
Sbjct: 407 TEE 409


>gi|322387050|ref|ZP_08060661.1| phage integrase family site-specific recombinase [Streptococcus
           infantis ATCC 700779]
 gi|321142037|gb|EFX37531.1| phage integrase family site-specific recombinase [Streptococcus
           infantis ATCC 700779]
          Length = 377

 Score = 86.6 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 40/277 (14%), Positives = 91/277 (32%), Gaps = 43/277 (15%)

Query: 91  SRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP-----------SSAIQFLTS 139
           +     +Y   I     D +  K+T  HI    E  K  P           ++  + L  
Sbjct: 84  TSTQRNNYERHIKPYFKDTNLNKLTYDHIFEFREYLKTKPKKQNENETLSYNTINKILIL 143

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR-LAFEF 198
           ++ +F   +R+  +  NP  ++ +   +   I+ W+ E+  +F+    +      L F  
Sbjct: 144 LKKIFDTGIRKSLIDKNPVENLRKLPIRKPNIKFWSIEEFTRFRELIQDDEISYDLFFVI 203

Query: 199 LLYSGLRCSDSCRAGVQHLQ---------------NNIFSIKTQKTGTIIT-VELPDGFM 242
             ++G+R  +        +                NN   I T KT +    + +     
Sbjct: 204 AFFTGMRMGEILALNWNDIDLLTNTIYVTKTVYFVNNTSYINTTKTRSGTRNITINQKLA 263

Query: 243 KLLAMTPIGKETFF--INNDKQKM----------NATQFSIWFKAKATKAG-VNK-SAHG 288
           ++L    + ++        + +++                  FK    +   + K   H 
Sbjct: 264 EMLKDWKVKQKEKLEEFTKNTEELQIIQSTPITITKNMIDKKFKQILERDKDLKKIRIHD 323

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
           +R   A++  + G     +    G  ++    +TY+ 
Sbjct: 324 LRHSHASLLINQGEDYLVVKERLGHASITTTIDTYSH 360


>gi|258623268|ref|ZP_05718275.1| site-specific recombinase IntI [Vibrio mimicus VM573]
 gi|258584454|gb|EEW09196.1| site-specific recombinase IntI [Vibrio mimicus VM573]
          Length = 320

 Score = 86.6 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 42/294 (14%), Positives = 88/294 (29%), Gaps = 57/294 (19%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWA 147
           A  +  ++  +  + I          +  K +   +       + A +  +       + 
Sbjct: 19  AKKTIEAYLHWITRYIYFHNKKHPSLMGDKEVELFLTHLAVNGNVAAKTQSLALNSLSFL 78

Query: 148 VRQEYVAINP-CLSVE--RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGL 204
            ++  +   P  L +   R + + +     T+++++          + +L  + L  SGL
Sbjct: 79  YKE--ILKTPLSLEIRFQRSQLERKLPVVLTRDEIRCLLDVVDP--KYQLPAKLLYGSGL 134

Query: 205 RCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLAMTPIGKETFFINN--- 259
           R  +  R  VQ +  +  +I+    K G   TV L       L       + ++  +   
Sbjct: 135 RLMECIRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHLKEQIALAKRYYDRDLHQ 194

Query: 260 -------------------------------------------DKQKMNATQFSIWFKAK 276
                                                       +  MN T      +  
Sbjct: 195 KNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVMRRHHMNETVLQRTVRRS 254

Query: 277 ATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           A +AG+ K+   H +R   AT   + GA    +    G   V   + YT   +R
Sbjct: 255 AQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHVLNR 308


>gi|319780736|ref|YP_004140212.1| tyrosine recombinase XerC [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317166624|gb|ADV10162.1| tyrosine recombinase XerC [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 312

 Score = 86.2 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 46/291 (15%), Positives = 88/291 (30%), Gaps = 31/291 (10%)

Query: 71  LKWLISEYRKS-AHWGSLAVNSRISFESYFDQIIRKS--------GDFDYRKITTKHIRS 121
           L+     + K  A    L+  +  ++E    Q +           G  D   +    +R 
Sbjct: 12  LQAARESWLKMLARERRLSPETVEAYERDTRQFLHFLTGHCGGSPGISDIADLRPADLRG 71

Query: 122 GVESRKHTPSSAIQF---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
            + +R++  + A      L  +R L ++  R+         ++  P++     +P T  D
Sbjct: 72  FLAARRNGGAGARTLGRGLAGIRSLLRFLERRGLANAAGAAALRAPRQPKSLPKPLTASD 131

Query: 179 MQ-------QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKT 229
            +       Q        ++       L  SGLR S++       L    +       K 
Sbjct: 132 AKHIVSIEGQLAEEPWIAARNAAVLTLLYGSGLRISEALGLAGADLASAADTVLRVAGKG 191

Query: 230 GTIITVELPDGFMKLLAMTPI-------GKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
           G    V +    ++ +A            K   F       +N            +   +
Sbjct: 192 GKTRLVPVLPVALRAIAEYRRLCPYHLDPKGLLFRGARGGPLNPAIVQRDMAKLRSALNL 251

Query: 283 N--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
               + H +R   AT     G     +    G  ++   + YT G D  RL
Sbjct: 252 PDTATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQIYT-GVDTARL 301


>gi|300872283|gb|ADK38969.1| IntI4 [Vibrio sp. V84(2010)]
          Length = 290

 Score = 86.2 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 42/289 (14%), Positives = 86/289 (29%), Gaps = 57/289 (19%)

Query: 93  ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEY 152
            ++  +  + I          +  K +   +         A +  +       +  ++  
Sbjct: 1   RAYLHWITRYIHFHNKKHPSLMGDKEVEEFLTYLAVQGKVATKTQSLALNSLSFLYKE-- 58

Query: 153 VAINP-CLSVE--RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDS 209
           +   P  L +   R + + +     T++++++         + +L  + L  SGLR  + 
Sbjct: 59  ILKTPLSLEIRFQRSQLERKLPVVLTRDEIRRLLEIVDP--KHQLPIKLLYGSGLRLMEC 116

Query: 210 CRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLAMTPIGKETFFINN-------- 259
            R  VQ +  +  +I+    K G   TV L       L       + ++  +        
Sbjct: 117 MRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHLKEQIALAKRYYDRDLHQKNYGG 176

Query: 260 --------------------------------------DKQKMNATQFSIWFKAKATKAG 281
                                                  +  MN T      +  A +AG
Sbjct: 177 VWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVMRRHHMNETVLQKAVRRSAQEAG 236

Query: 282 VNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           + K+   H +R   AT   + GA    +    G   V   + YT   DR
Sbjct: 237 IEKTVTCHTLRHSFATHLLEVGADIRTVREQLGHTDVKTTQIYTHVLDR 285


>gi|218890060|ref|YP_002438924.1| phage integrase, putative [Pseudomonas aeruginosa LESB58]
 gi|218770283|emb|CAW26048.1| phage integrase, putative [Pseudomonas aeruginosa LESB58]
          Length = 367

 Score = 86.2 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 60/355 (16%), Positives = 106/355 (29%), Gaps = 39/355 (10%)

Query: 7   LPPFVTKERT-RHGKIIYYFRKGHGRRIRLPYPHES----TFIPAYMSALTGSTPKREYI 61
           LPP + K+   R G   Y +R     R+      ++      I A  +     T      
Sbjct: 13  LPPNLYKKTDSRSGVTYYAYRDPVSGRMFGLGKDKARAIREAIEANHTESLQPTIADRLS 72

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121
           + P + P      ++EY K      LA  S  +      ++  + G  D R I T  +  
Sbjct: 73  SEPSRPPRLFDDWLTEYEKIYVERGLAAASVRNTRMRLKRLRARFGTMDIRDIGTIDVAG 132

Query: 122 GVESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
                        A    + +R +F  ++   +   NP   V +  R        T E  
Sbjct: 133 YFSEMAKEGKAQMARAMRSLLRDVFMESMAAGWTDKNPVE-VTKAARVKIKRERLTLETW 191

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239
           +   +   +    R A E  + +G R  D      +  Q+    +   KTG  + +    
Sbjct: 192 RLIYAEAKQPWLKR-AMELAVITGQRREDLAAMQFKDEQDGYLQVVQSKTGMRLRISTSI 250

Query: 240 GFMKLLAMTPI----------------GKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
           G   L                         T       Q +     S  F     +A   
Sbjct: 251 GLAVLGLDLASVIKSCRGRVLSRYMIHHHRTISRAKAGQPIMLDTISAAFADARDRAAKK 310

Query: 284 K---------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY--TKGAD 327
                     S H +R  +A +  + G    +     G ++    + Y  ++GA+
Sbjct: 311 HGLDFGASPPSFHEMRSLAARLHEEEG---RDAQRLLGHRSAKMTDLYRDSRGAE 362


>gi|149182724|ref|ZP_01861190.1| integrase-recombinase protein [Bacillus sp. SG-1]
 gi|148849584|gb|EDL63768.1| integrase-recombinase protein [Bacillus sp. SG-1]
          Length = 279

 Score = 86.2 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 41/267 (15%), Positives = 86/267 (32%), Gaps = 27/267 (10%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYF----DQIIRK-SGDFDYRKITTKHIRSGVESRK 127
            +I ++         + N+  ++E       D + +K     +  +   +     +E + 
Sbjct: 7   AIIEDFTVWLENEGKSANTVRTYERELTKYQDWLQQKGLSLKEVSQEDVQQYIRFLEGQG 66

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE-GIRPWTKEDMQQFKSFW 186
            +P +  + L ++R   K+  R E         +E         I               
Sbjct: 67  RSPVTTDKILGAIRTFSKFIKRPEI-----TTGIEMKTTDKRTEIECLNGSQCATLLKKV 121

Query: 187 SEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTGTIITVELPDG-- 240
            E    R       LL++G+R S+ C      +        ++T  TG   T+ L     
Sbjct: 122 KEEGNDRNTAIVYTLLHTGIRVSELCALNQSDIDLDKGRLEVRTS-TGHPRTIPLSVEAK 180

Query: 241 --FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISA 298
                 LA +P+ K+  F++   +++         K        + + H +R        
Sbjct: 181 YYLECHLATSPV-KDAVFVSRANERLTERAIQYILKKF------DVNPHKLRHTFCQQLV 233

Query: 299 DAGATAHELMATYGWKTVDQAETYTKG 325
           D G +   +    G K ++  + Y K 
Sbjct: 234 DKGVSIEIVSRLAGHKDINVTKRYAKS 260


>gi|331086494|ref|ZP_08335573.1| hypothetical protein HMPREF0987_01876 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330410552|gb|EGG89980.1| hypothetical protein HMPREF0987_01876 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 409

 Score = 86.2 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 66/392 (16%), Positives = 119/392 (30%), Gaps = 85/392 (21%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN-------SPRK 66
           E  R    +Y +R   G + R            Y S L G   K + I            
Sbjct: 16  ETYRKNDGLYMYRWIGGDKKR---------HAVYCSTLEGLREKEKEIQNDLRDGIQQGS 66

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRSG--- 122
              TL  +   ++       L   +R ++   ++  +    G+   ++I    +R     
Sbjct: 67  SNITLNDVYKMWKNDK--VGLKQTTRNNYIYMYEHFVMNDFGNRKIKEIRKSDVRRYYNG 124

Query: 123 -VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL----SVER-PKRKTEGIRPWTK 176
            V+S+K + ++     T +  +F  AV   Y+ INP       V+R    +T      T 
Sbjct: 125 IVDSKKMSVATLESIHTVLHQVFILAVEDGYIRINPSDLVLGDVKRSHNFETPKRHALTI 184

Query: 177 EDMQQFKSFWSEGSQPRLA---FEFLLYSGLRCSDSCRAGVQHLQNNI------------ 221
              + F S+ ++  + +     F F L +G R S+      + +  +             
Sbjct: 185 PQQEAFVSYINKSEKYKHWLPLFTFFLGTGCRVSEVVGLRWEDVHMDENYIEINHNMVYY 244

Query: 222 --------FSIKTQKT--GTIITVELPDGFMKLLAMTPIGKET--------------FFI 257
                   FS+ + KT  G  I   LP+    +L      +E                F+
Sbjct: 245 QRDKGKCYFSVTSPKTTAGYRIIPMLPEVKQAILNEKKYQEEVGLTCQASIDGYTDFIFL 304

Query: 258 NNDKQKMNATQFSIWFKAKATK-----------------AGVNKSAHGVRKFSATISADA 300
           N +    N    +   K                         N S H +R   AT   + 
Sbjct: 305 NRNGFAHNPQTINRTIKRITLAYNEEEIERAERERRAPVLLPNFSCHNLRHTFATRYCEN 364

Query: 301 GATAHELMATYGWKTVDQA-ETYTKGADRIRL 331
                 +    G K +    E Y +     ++
Sbjct: 365 ETNLKVIQEIMGHKDIATTMEIYAEATKEAKV 396


>gi|323949163|gb|EGB45054.1| phage integrase [Escherichia coli H252]
          Length = 418

 Score = 86.2 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 52/359 (14%), Positives = 122/359 (33%), Gaps = 39/359 (10%)

Query: 22  IYYFRKGHGRRIRLPYPHE----------STFIPAYMSALTGSTPKREYINSPRKKPT-- 69
            Y +R    R   +   +              I A      G +P     +  +K     
Sbjct: 38  RYDYRINGRRETLVIGQYGRDGISLAEAREELIAAKKLLKAGQSPAAAKRDGIKKIRGAE 97

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVES--R 126
           T       Y K      LA ++R   ++  D+ I+   G+    +ITT  +R   +    
Sbjct: 98  TFAVHTDSYMKHVI---LADSTRAMKQAVIDRDILPVLGNKMMAEITTSMVRDLCDRIVE 154

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE--RPKRKTEGIRPWTKEDMQQF-K 183
           +   ++A+Q    +  +++ A  + +   NP   ++           R  T E++  F +
Sbjct: 155 RGGRATAVQAREIISSVYRHANDRGHGLFNPAADIKPSSIAIFKPRERTLTPEEIGLFFR 214

Query: 184 SFWSEGSQ--PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIITVEL 237
           +  + G+    ++A + +L + +R  +   A    +    ++        K      + L
Sbjct: 215 TLDAIGAMGTMKMALKLVLITMVRKGEFTNATWDEIDFKKWTWTIPSDRMKGSRAHVIYL 274

Query: 238 PDGFMKLLAMTP--IGKETFFI---NNDKQKMNATQFSIWFKAKATKAGVNK------SA 286
           P     +L       G   + +    N ++ ++    +            +       + 
Sbjct: 275 PKQAQDILVGLQMCAGGSEYLVPGRYNFRKPLSNAALNSLIDRTVKIINEDGEYIQDFTV 334

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345
           H +R+ ++T+  +AG  +  +      +       Y K A+  R      ++ + ++DS
Sbjct: 335 HDMRRTASTLLHEAGYPSDWIEKALAHEQKGVRAVYNK-AEYARQRAYMLQQWADMIDS 392


>gi|56475688|ref|YP_157277.1| phage-related integrase [Aromatoleum aromaticum EbN1]
 gi|56311731|emb|CAI06376.1| phage-related integrase [Aromatoleum aromaticum EbN1]
          Length = 417

 Score = 86.2 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 43/276 (15%), Positives = 88/276 (31%), Gaps = 25/276 (9%)

Query: 85  GSLAVNSRISFESYFDQII-RKSGD--FDYRKITTKHIRSGVESRK---HTPSSAIQFLT 138
             LA  +R S      +++  + G+   D   +   H+R     +      P++A   + 
Sbjct: 136 RGLAPKTRSSALRIVRRLLVTRFGEDEIDVAAVRPDHVRRFFAQQAKLYSKPANAGTVVA 195

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPK--RKTEGIRPWTKEDMQQFKSFW-SEGSQPRLA 195
           ++R  F++             +V  P   +     +  T E+++Q        G   R A
Sbjct: 196 ALRGYFRYRASLGDAVHGLIGAVSYPANWQLASLPKTLTTEEVEQLVGSLGQAGRSLRRA 255

Query: 196 FEF---LLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAM--- 247
                  L  GLR  +  R  +  +       +++  K      + LP      +A    
Sbjct: 256 DAIVRCALDLGLRSGEVARLSLDDIDWRAGTITVRHTKGRHDDVLPLPVTTGAAIAAYLK 315

Query: 248 ---TPIGKETFFINN---DKQKMNATQFSIWFKAKATKAGVNKS-AHGVRKFSATISADA 300
                      F+ +     Q           +    +AG+  + +H +R   A      
Sbjct: 316 HERPKTHNRAIFVRHVAPRDQPAGPDLVRKTIRQAFKRAGLPYTRSHLLRHTMANRLLAG 375

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
           GA+  E+      ++++    Y K  D  +L     
Sbjct: 376 GASLKEVADVLRHRSLNTTLIYAK-LDSRKLAEVAL 410


>gi|325299221|ref|YP_004259138.1| integrase family protein [Bacteroides salanitronis DSM 18170]
 gi|324318774|gb|ADY36665.1| integrase family protein [Bacteroides salanitronis DSM 18170]
          Length = 369

 Score = 86.2 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 51/297 (17%), Positives = 93/297 (31%), Gaps = 23/297 (7%)

Query: 46  AYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK 105
            Y + L      +               LIS+YR   H            ++ F  + + 
Sbjct: 70  NYWNQLPSFFHPKSEQRPEHVATCDFFHLISDYRIHYHRKDC-----RMVQAMFTYLEQF 124

Query: 106 SGD-FDYRKITTKHIRSGV--ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162
                   KIT +   S       K   S+ + +    +V   + V + ++A NP   + 
Sbjct: 125 HSSALPMAKITRRFCNSFFIFLQEKLRGSTPVNYFKKFKVCLDYCVEEHFLASNPAKGIR 184

Query: 163 RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI- 221
            P+         +  ++ +        S+ + AF F   SGLR  D      +++     
Sbjct: 185 MPQNNAVTKEILSTRELVKLVKTPCRNSEVKRAFLFSCQSGLRWCDILELRYKNIDFQQR 244

Query: 222 -FSIKTQK-----TGTIITVELPDGFMKLLA-MTPIGKETFFINNDKQKMNATQFSIWFK 274
              +  +K        ++ + L D  ++LL      G +  F        ++    I   
Sbjct: 245 HLMLIQKKVAGHSQKAVLHLYLNDNALRLLHERQGRGNDLVFEL----PSHSYSLRI-LN 299

Query: 275 AKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
                AG+ K  S H  R    T+    GA      +  G  +    E Y    D+ 
Sbjct: 300 EWTIHAGLRKHISFHCARHTFITLIMARGANIKTAASLAGHSSTRHTEKYIHIIDKQ 356


>gi|323484024|ref|ZP_08089395.1| phage integrase family Site-specific recombinase [Clostridium
           symbiosum WAL-14163]
 gi|323402641|gb|EGA94968.1| phage integrase family Site-specific recombinase [Clostridium
           symbiosum WAL-14163]
          Length = 283

 Score = 86.2 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 41/258 (15%), Positives = 87/258 (33%), Gaps = 14/258 (5%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-FDYRKITTKHIRSGVESRKHTPSSA 133
           + +++ +      +  +   +    +       +     K  T   +  +  R +  SS 
Sbjct: 12  VEQFKWNLMEQERSEATIEKYIRDINAFFEWLPEGKRVDKPVTIAYKQSLLERGYASSSI 71

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-GSQP 192
              + ++   F +        I P L ++     +E  R  TKE+ ++      E   + 
Sbjct: 72  NSMVAALNSFFSY-SEWGDCRIRP-LRIQAQTMVSEE-RKLTKEEYKRLLHAAKEKNERL 128

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL----AMT 248
            L  + +   GLR S+     V+ +      +     G + TV LP     +L       
Sbjct: 129 YLVMQSICSVGLRVSELKFLTVEAVHRGRTVVN--NKGKMRTVVLPPKLCLILKKYCRRQ 186

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGATAH 305
            +   + F++   + ++ +      K  A  AGV       H +R   A++  +      
Sbjct: 187 RVTGGSIFVSRTGRPLDRSNIWSAMKELAKAAGVAADKVFPHNLRHLFASVYYERFQDIV 246

Query: 306 ELMATYGWKTVDQAETYT 323
           +L    G   V+    YT
Sbjct: 247 KLADILGHSNVNTTRIYT 264


>gi|300723961|ref|YP_003713274.1| integrase [Xenorhabdus nematophila ATCC 19061]
 gi|297630491|emb|CBJ91156.1| Integrase [Xenorhabdus nematophila ATCC 19061]
          Length = 337

 Score = 86.2 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 38/238 (15%), Positives = 79/238 (33%), Gaps = 14/238 (5%)

Query: 93  ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVR 149
                    +IR  GD    ++T + +      R       S+  + +  +  +F     
Sbjct: 80  KKRNYSIQGMIRDMGDPAVYQLTPRFLSEYRSQRLYEGIKASAINRDMAMLSGIFTVLTD 139

Query: 150 -QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD 208
             EY   +P  S++  K K   +   T+ ++    +  ++ +         L +G R  +
Sbjct: 140 IMEYTGTHPIKSIKPLKIKKPEMSYLTEPEIADLLNAVTDDAWRLTV--LCLNTGARWGE 197

Query: 209 SCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ 268
           + +   +++ +N  +    K G   T+ + D  MK++  T      F +N          
Sbjct: 198 ANKLRAENMLHNRVTFTETKNGKHRTIPISDEVMKVVK-TKSSGALFDVN-------YNS 249

Query: 269 FSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           ++   K         ++ H +R   A      G     L    G   + Q   Y   A
Sbjct: 250 YANILKKVKLDLPQGQAVHVLRHTFAAHFMMNGGNILTLQKIMGHANIQQTMAYAHFA 307


>gi|134101614|ref|YP_001107275.1| phage integrase family site specific recombinase [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133914237|emb|CAM04350.1| site-specific recombinase, phage integrase family
           [Saccharopolyspora erythraea NRRL 2338]
          Length = 312

 Score = 86.2 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 50/287 (17%), Positives = 88/287 (30%), Gaps = 27/287 (9%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD---------FDYRKITTKHIRS 121
              L++++ ++         +R ++     Q  R   D             + T  HI  
Sbjct: 12  WSHLLADWDRTLRSSGKPETTRYNYLLAVAQFARFLTDNAADCAAGPAAPAESTRAHIEE 71

Query: 122 GVESRKHTPSS--AIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
                  T S+  A+     ++  FKW A  ++ +  +P   V+ P   T+ +     ED
Sbjct: 72  FQAWMIETRSASTALNKHKVLQQFFKWLAEDEQEIDRSPMERVKAPTTPTKLVPVMGDED 131

Query: 179 MQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTII 233
            ++     +  +    + +        +G R ++        L     S+    K G   
Sbjct: 132 TKKILDTCNGKTFTDLRDQAIIRLYYGTGARLAEVANLTTDDLDMATDSVVYQGKGGKSR 191

Query: 234 TVELPDG--------FMKLLAMTPIGKETFFINNDK-QKMNATQFSIWFKAKATKAGVNK 284
            V                          + ++     Q + A    I  K +   AGV+ 
Sbjct: 192 RVRFGPKTARALSRYLRARSRHRAADVPSLWLAARGAQPLQANGIKIMLKRRGKHAGVSG 251

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
             AH  R   A     AG    +LM   GW T   A  Y   A   R
Sbjct: 252 VHAHRWRHNYAHAWKLAGGDTGDLMLLLGWSTDAMARHYGASAAAER 298


>gi|284006802|emb|CBA72070.1| phage integrase [Arsenophonus nasoniae]
 gi|284009416|emb|CBA76618.1| phage integrase [Arsenophonus nasoniae]
          Length = 387

 Score = 86.2 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 48/264 (18%), Positives = 93/264 (35%), Gaps = 26/264 (9%)

Query: 103 IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAV-RQEYVAINPCLSV 161
            R+        I         + R  +  +   +L  MR L + A     ++   P   +
Sbjct: 116 RRRWEIRRDAAIRDGKTIPAYKERPVSVGTKSHYLGFMRSLLRAAANDWGWMKTAPV--I 173

Query: 162 ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN- 220
           +  K  ++ IR  T+E+  +      E  +P + F     +GLR S+        +    
Sbjct: 174 KTNKPVSKRIRWLTREEANRLIDCMPESIKPVVIFALS--TGLRRSNIIDLEWSQVDMQR 231

Query: 221 ---IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK-------------QKM 264
                + +  K G  I V L D   K+L         +   + K             +KM
Sbjct: 232 KVAWINPENAKAGKAIGVALNDTACKVLKGQIGKHSRWVFVHTKAANRADGTKTPAIRKM 291

Query: 265 NATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
                + W      +AG++    H +R   A+    +G     L    GW++++    Y 
Sbjct: 292 RVDDNTGWL-LGLKRAGIDNFRFHDLRHTWASWLIQSGVPLSALQEMGGWESIEMVRRYA 350

Query: 324 KGADRIRLGIKNSRRISSVVDSDD 347
             A       +++++I S++D +D
Sbjct: 351 HLAPNHL--TEHAKKIDSLLDGND 372


>gi|254885277|ref|ZP_05257987.1| tyrosine type site-specific recombinase [Bacteroides sp. 4_3_47FAA]
 gi|294777930|ref|ZP_06743369.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
 gi|319643368|ref|ZP_07997994.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_40A]
 gi|254838070|gb|EET18379.1| tyrosine type site-specific recombinase [Bacteroides sp. 4_3_47FAA]
 gi|294448219|gb|EFG16780.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
 gi|317384997|gb|EFV65950.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_40A]
          Length = 386

 Score = 86.2 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 39/260 (15%), Positives = 86/260 (33%), Gaps = 30/260 (11%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVESRKHTPSSAIQFLTSMR 141
             L  +++ +  +    +       ++  +T          +    +  ++  + +  ++
Sbjct: 117 SQLKDSTKRNHLTTISLLQSFKPTIEFEDLTYNFVTDFEKFLYESGYQTNTVAKHMKHLK 176

Query: 142 VLFKWAVRQEYVAINP-CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG-----SQPRLA 195
                A+ + Y+  N       + K K         E+M++ +     G          A
Sbjct: 177 SFVNAAINKGYIDPNNYAFRRYKIKMKEGKHVFLLPEEMKKLEEVSLTGRNSCLEHTLDA 236

Query: 196 FEFLLYSGLRCSDSCRAGVQHL--QNN--IFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251
           F F  Y+GLR SD      +++   +        + KTGT + + L         +   G
Sbjct: 237 FLFCCYTGLRYSDFVNLNEKNIVKMDGKLWLIFDSVKTGTEVKLPL--------NLLFEG 288

Query: 252 KETFFINNDKQKMNA-------TQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302
           K    +   + K ++       +  +         A ++K  S H  R  +AT+    GA
Sbjct: 289 KALTLLQKYQGKWSSFFSIKNNSSVNKELIRIGKLAKISKHFSFHSARHTNATLLIYKGA 348

Query: 303 TAHELMATYGWKTVDQAETY 322
               +    G K +   + Y
Sbjct: 349 NITTVQKLLGHKNLATTQIY 368


>gi|237750988|ref|ZP_04581468.1| phage integrase [Helicobacter bilis ATCC 43879]
 gi|229373433|gb|EEO23824.1| phage integrase [Helicobacter bilis ATCC 43879]
          Length = 370

 Score = 86.2 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 38/260 (14%), Positives = 95/260 (36%), Gaps = 28/260 (10%)

Query: 88  AVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLT--SMRVLF 144
             ++ I +E+ F   I+   G+   ++ + K ++   + +    S   + +    +R +F
Sbjct: 85  KKSTLIRYENVFKKHIVSSIGNMRLQEFSPKIMKVIFKDKFSHLSFKNKGIAICVLRKIF 144

Query: 145 KWAV-RQEYVAINPCLSVERPKRKTEGIRPWTKE-------DMQQFKSFWSEGSQPRLAF 196
            +A+  + +   NP   ++  K++    +            D+ +        ++ ++ F
Sbjct: 145 DYAICDEIFTDSNPMQIIKHKKKEYAEPQRLNDPLNLNQVMDILKHLKTKDMDNRLKMYF 204

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIK-----TQKTGTIIT---------VELPDGFM 242
           +  L +G+R ++        +     +I+      Q T TI T         +++     
Sbjct: 205 QLALLTGMRVNEILALKYSDINVEKNTIQVYKSLQQGTNTISTTKTENGKRNIQILPFLK 264

Query: 243 KLLAMT--PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISAD 299
            LL  T    G    F+N     ++ +    +FK    +  + +++ +  R   A+I   
Sbjct: 265 SLLKDTLDTNGSGYIFLNKRGGFISDSTMRKYFKKILQELNIGDRTLYSTRHTFASIMIA 324

Query: 300 AGATAHELMATYGWKTVDQA 319
            G     +    G K +   
Sbjct: 325 YGEDIAWVSKMLGHKDIATT 344


>gi|109302897|ref|YP_654712.1| Int [Pasteurella phage F108]
 gi|73918061|gb|AAZ93639.1| Int [Pasteurella phage F108]
          Length = 340

 Score = 86.2 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 47/341 (13%), Positives = 100/341 (29%), Gaps = 46/341 (13%)

Query: 10  FVTKERTRHGKIIYYFRKGHGRRIR---LPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
            V K+ T+ GK +  F    G+R+R   +     + F     +     +     + S   
Sbjct: 2   GVRKDSTKGGKWLAEF-YHDGKRVRKWFVTRGEATRFFNQEQAKNATQSENVRVVLSNDL 60

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGV 123
            P +             W  L   +    ++  +++       GD    K TT+      
Sbjct: 61  APLSHYA--------HEWYELYGQTLNDGQARLNKLLNLCSHLGDPPANKFTTQDFAEYR 112

Query: 124 ESR-----------KHTPSSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGI 171
           + R               S+  +    +R +F        +   NP   +   K     +
Sbjct: 113 KKRLAGKFSADPKRPPKQSTVNREHAYLRAVFNELKSLGKWSGDNPLSEISLFKENETEL 172

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFE--FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229
                +++++            L       L +G R S++ +     +     +    K+
Sbjct: 173 AFLFGDEIRRLIDECDNSRNKDLGLITRICLATGARWSEAEQLKQAQVIPYKITYINTKS 232

Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---- 285
           G   T+ +      +L               + ++    +   F+    +AG++      
Sbjct: 233 GKNRTIPISPELYNMLP------------QRRGRLFGDAY-EAFENAVDRAGIDLPKGQL 279

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            H +R   A+     G     L    G  T++    Y   A
Sbjct: 280 THVLRHTFASHFMMNGGNILVLKEILGHSTIEMTMKYAHFA 320


>gi|298486603|ref|ZP_07004661.1| Integrase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|298158818|gb|EFH99880.1| Integrase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
          Length = 328

 Score = 86.2 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 44/281 (15%), Positives = 86/281 (30%), Gaps = 32/281 (11%)

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--R 126
            T    + EY        L+ ++  S +S    I    G+   R I T  I + + +  +
Sbjct: 41  RTFADWLGEYDLIYTERGLSAHTTRSIKSRLKVINNAFGEKYMRSIRTMDIATFLATFTK 100

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
                 +    + +R +F  A+   +  +NP  + +  + K +  R  + E  +   +  
Sbjct: 101 AGKAPMSKALRSLLRDVFTEAIAAGWCDLNPVDATKAARSKVKRGR-LSLELWKAAHAAT 159

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
                 R A E  L +G R  D      +   +    +   KTG  + +        +  
Sbjct: 160 DRPWLKR-AMELALLTGQRRDDIGSMLFKDEHDGFLHVIQSKTGARLRISTTLRLEAIDL 218

Query: 247 MTPI----------------GKETFFINNDKQKMNATQFSIWFKAK----ATKAGVNK-- 284
                                  T  +      +     ++ F       A   G++   
Sbjct: 219 DLSSVIKMCRDRVLSKHLVHHTRTVAVAKAGSPVKLNTLTLAFAEARDKGAAALGIDLGT 278

Query: 285 ---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
              S H +R  +A + A  G    +L    G +     E Y
Sbjct: 279 SPPSFHEMRSLAARLHALEGRDPQKL---LGHRNAAMTEMY 316


>gi|284006938|emb|CBA72212.1| phage integrase [Arsenophonus nasoniae]
          Length = 383

 Score = 86.2 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 50/266 (18%), Positives = 89/266 (33%), Gaps = 38/266 (14%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLF 144
             L+ ++   ++   + ++    +   R +T   I++ ++ +  T  +    L+ +R   
Sbjct: 98  RQLSPSTINGYKKCINALMELH-NIQVRSLTPAVIKNWIQRKNTTLKTIRNQLSFLRSAI 156

Query: 145 KWAVRQEYVAINPCLSVERPKRKTE--------GIRPWTKEDMQQFKSFWSEGSQPRLAF 196
             A+    + INP   V   +  +          I P +  +++   S         L F
Sbjct: 157 DEAITDGLININPVSQVTAARYHSNNTSKESIYVIDPLSPSEVELLLSATKYKQWENL-F 215

Query: 197 EFLLYSGLRCSDSCRAGVQHLQ-------------NNIFSIKTQKTGTIITVELPDGFMK 243
           +F + +GLR S+ C      +                I      K+GT   VEL D  + 
Sbjct: 216 QFAINTGLRSSELCALRWDDIDFVQRLAYISSASVVGIIKGTKTKSGTR-KVELNDQAIL 274

Query: 244 LLAMTPIGKETFFINND-------KQKMNATQFSIWFKAKA---TKAGVNKS-AHGVRKF 292
            L        TF    +       K+       +I  KA      KAG+     +  R  
Sbjct: 275 ALQNQKP--FTFLKTKEIFEDPKTKKPWAGAD-AIRKKAWMPTLRKAGIRYRNPYQTRHT 331

Query: 293 SATISADAGATAHELMATYGWKTVDQ 318
            AT     GA    L A  G K  + 
Sbjct: 332 FATRHISQGANLFWLAAQMGHKGPEM 357


>gi|38637707|ref|NP_942681.1| Orf2/integrase/recombinase fusion protein [Ralstonia eutropha H16]
 gi|32527045|gb|AAP85795.1| Orf2/integrase/recombinase fusion protein [Ralstonia eutropha H16]
          Length = 875

 Score = 86.2 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 51/337 (15%), Positives = 105/337 (31%), Gaps = 41/337 (12%)

Query: 13  KERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           + R RH       R G G R  L +  +  F+           P+R            ++
Sbjct: 537 RYRARH------VRPGPGDRAALRHLID--FLDRERLISAQRMPERRLTPIESCTQAYVE 588

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRK---SGDFDYRKITTKHIRSGVE--SRK 127
           +L           +L+  + +++  +  + +      G     ++    + + V+  + +
Sbjct: 589 YL-------HEARALSKATIVNYVPFIREFLEDCFGDGRIRLSRLRAGDVVNFVQCQALR 641

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR--KTEGIRPWTKEDMQQFK-- 183
                A    T++R   ++A  +  + ++   +V            R    E +QQ    
Sbjct: 642 LHLKRAKLMTTALRSFLRYACYRGDMTLDLAAAVPVVANWSMQSIPRGIPPEQIQQLLVS 701

Query: 184 --SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPD 239
                + G +       L   GLR  +     +  +     + S++  K+G    + LP 
Sbjct: 702 INRRTAVGRRDYAIILLLARLGLRSGEVAFLELDDIDWNTGVLSVR-GKSGQRNGLPLPA 760

Query: 240 GFMKLLAMTPIGKET------FFINNDK---QKMNATQFSIWFKAKATKAGVNK---SAH 287
              K +A               F+           A+      +    +AG++     AH
Sbjct: 761 DVGKAIAAYLRDGRPQSTSRRVFLRAKAPVIGFRGASGVGSIVRHSLQRAGIDAPTTGAH 820

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             R   A      GA+  E+    G       + YTK
Sbjct: 821 QFRHGLACQMLSHGASLSEIGELLGHHHPQTTKIYTK 857


>gi|283771168|ref|ZP_06344059.1| phage integrase [Staphylococcus aureus subsp. aureus H19]
 gi|283459762|gb|EFC06853.1| phage integrase [Staphylococcus aureus subsp. aureus H19]
          Length = 349

 Score = 86.2 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 52/333 (15%), Positives = 114/333 (34%), Gaps = 28/333 (8%)

Query: 13  KERTR--HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT- 69
           + +TR   GK   Y  K  G+R R               A +    K   + S       
Sbjct: 8   RMKTRCYDGKKWQYEFKHEGKRYRKKGFRTK------REANSAGLDKLNELRSGFNIDNY 61

Query: 70  -TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRSGVE--S 125
            TL+     + K+     +  N+   + +    I + K G  +  KI  +  +  +   S
Sbjct: 62  ITLEEYFENWIKTYKQPVVKENTYRHYRNALQHIQKHKIGKMELSKINRQVYQKFINDYS 121

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV-----ERPKRKTEGIRPWTKEDMQ 180
           ++H   +  +   ++R     A+    +  NP   V     +  K + E     T+ ++ 
Sbjct: 122 KEHAKETIRKTNGAIRSALDDALYDGLIFKNPAYKVNYKAGKPTKSEQEKFISVTEYEIL 181

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTG-TIITVEL 237
           +      + ++  LA   ++ +G R S +    ++H+    N   I  +KT  +   + +
Sbjct: 182 K-DHVRKKRTRSSLALFIMICTGCRVSGARNIKIEHINQVKNTIFIDERKTNTSPRYISI 240

Query: 238 PDG----FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKF 292
                   M +++   I  + +        +N    +   K+      +   ++H +R  
Sbjct: 241 AKSDMKHIMDVISTFAISYDGYIFKEAGSIINLHAINNTLKSACRVNNIPIITSHALRHT 300

Query: 293 SATISADAGATAHELMATYGWKTVD-QAETYTK 324
             +     G + H +    G K +      Y+ 
Sbjct: 301 HCSYLLAKGVSIHYISKRLGHKNIAITTSVYSH 333


>gi|269137402|ref|YP_003294102.1| putative integrase [Edwardsiella tarda EIB202]
 gi|267983062|gb|ACY82891.1| putative integrase [Edwardsiella tarda EIB202]
          Length = 306

 Score = 86.2 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 35/271 (12%), Positives = 83/271 (30%), Gaps = 31/271 (11%)

Query: 86  SLAVNSRISFESYFDQ---IIRKSGDFD------YRKITTKHIRSGVESRKHTPSSAIQF 136
            LA + R S  S  +    I+R +   D       R +    +R+ +  + +  ++    
Sbjct: 22  GLAPSGRRSMRSLLNLSATILRHNATADSHDWSALRYVHVATLRATLAEQGYAVATINMV 81

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE----GIRPWTKEDMQQFKSFWSEGS-- 190
           L +++ + + A     +  +    ++  K          R  +KE+++   +        
Sbjct: 82  LAALKGVAQTAFNLGQMDADALARIKAVKGMRSDSEAAGRALSKEEVRLLLNATKTHPCK 141

Query: 191 ----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKL 244
               + R     L  +GLR  +                +++  K      V +     K 
Sbjct: 142 VRQNRDRALLLTLCGAGLRAGELVTLESHDYDVATRTLTVRQGKGRKKRAVVVAPPVGKA 201

Query: 245 LAMTP---IGKETFFINND------KQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSA 294
           LA         ++ F           Q +     +   +     A ++  + H +R+   
Sbjct: 202 LAAWIKVSADHDSLFCRIHRSGSVTGQPLTTAGLAGILRQLQETAQIHLFTPHDLRRTFI 261

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKG 325
           T   + G   + +    G   +     Y + 
Sbjct: 262 TRLLEQGTDLNIVRQLAGHSDISTTALYDRR 292


>gi|254496216|ref|ZP_05109111.1| putative integrase [Legionella drancourtii LLAP12]
 gi|254354608|gb|EET13248.1| putative integrase [Legionella drancourtii LLAP12]
          Length = 386

 Score = 86.2 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 33/255 (12%), Positives = 71/255 (27%), Gaps = 32/255 (12%)

Query: 99  FDQIIRKSGDFDYRKI---TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI 155
              I    GD    ++   T +      +  K    S    L  +R +   A   E++  
Sbjct: 88  LKSICPFIGDLTLEQVHIGTLQSFIKAKQEAKLKTKSINNTLELVRHILNVAAT-EWIDE 146

Query: 156 NP------CLSVERPKRKT-EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD 208
           N          ++    K      P +  +  +F             F+    +G R  +
Sbjct: 147 NSLTWLLVAPKIKLLPVKDARAPFPLSWSEQSRFLEALPVHLNQMARFKV--NTGCREQE 204

Query: 209 SCRAGV-----------------QHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251
            C+                     H+  +    +  K G    V L D    ++      
Sbjct: 205 VCQLRWEWEKRVPSLNTSVFIIPSHINRDGELRQLVKNGEDRLVILNDEAKAVIEEVRGI 264

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMAT 310
              F  + + + +     + W +    KA + +   H ++         AG +  +    
Sbjct: 265 HSEFVFSYNGKPITRMNNTAW-RNARKKANLSDLRVHDLKHTFGRRLRAAGVSYEDRQDL 323

Query: 311 YGWKTVDQAETYTKG 325
            G ++      Y++ 
Sbjct: 324 LGHRSGRITTHYSQA 338


>gi|218129010|ref|ZP_03457814.1| hypothetical protein BACEGG_00583 [Bacteroides eggerthii DSM 20697]
 gi|217988786|gb|EEC55104.1| hypothetical protein BACEGG_00583 [Bacteroides eggerthii DSM 20697]
          Length = 386

 Score = 86.2 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 41/265 (15%), Positives = 89/265 (33%), Gaps = 35/265 (13%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRKITTK---HIRSGVESRKHTPSSAIQFLTSMRV 142
           ++  ++R ++    D +   +    +  I           + S K   ++ I+ +  ++ 
Sbjct: 96  NIKDSTRKNYFRTLDTLKEYAPAARFCNIDKAFVCGYELFLLSLKMRANTIIKHMKHLKK 155

Query: 143 LFKWAVRQEYVAINPCLSVERP------KRKTEGIRPWTKEDM--------QQFKSFWSE 188
            F  A R+ Y+     LS+E        K++       T +++         +F++    
Sbjct: 156 AFHQACRKGYLK----LSIEELFSLCSVKQEKTFKESLTSKELLILYQYLQTEFETMADR 211

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN----NIFSIKTQKTGTIITVELPDGFMKL 244
             +    F F   +GLR SD C     +++         +  +KTG  + V +     ++
Sbjct: 212 EKEILAGFLFSCLTGLRYSDICSVEYSNIKRIRNKRWLFLTMKKTGQKVFVPI----EQM 267

Query: 245 LAMTPIGKETFFINNDKQ--KMNATQFSIWFKAKAT----KAGVNKSAHGVRKFSATISA 298
            +   +G    F     +   M +         +      +   N S H  R  +AT+  
Sbjct: 268 FSGRALGIMRLFHRTRGKLFHMPSNAVCNRIIKRIYKKLFRGKKNISFHTGRHTAATLLL 327

Query: 299 DAGATAHELMATYGWKTVDQAETYT 323
                   +    G   +   ETY 
Sbjct: 328 YHNTPLTTIKEILGHTNIRTTETYA 352


>gi|213021541|ref|ZP_03335988.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
          Length = 236

 Score = 86.2 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 61/170 (35%), Gaps = 13/170 (7%)

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WSEGSQPRL 194
           +++R  F W V Q  +  NP   V  PK      +    +D+ +            + R 
Sbjct: 1   SALRSFFDWLVSQGELKANPAKGVSAPKAPRHLPKNIDVDDVNRLLDIDLNDPLAVRDRA 60

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT--------VELPDGFMKLLA 246
             E +  +GLR S+     ++HL  +   +     G+           V   + ++ L  
Sbjct: 61  MLEVMYGAGLRLSELVGLDIKHLDLDTGEVWVMGKGSKERRLPIGRNAVTWIEHWLDLRG 120

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSA 294
           +    +E  F++   ++++A      F     K G+N     H +R    
Sbjct: 121 LFASDEEALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVHPHKLRHSFG 170


>gi|149200531|ref|ZP_01877542.1| Integron integrase [Lentisphaera araneosa HTCC2155]
 gi|149136380|gb|EDM24822.1| Integron integrase [Lentisphaera araneosa HTCC2155]
          Length = 415

 Score = 86.2 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 46/339 (13%), Positives = 106/339 (31%), Gaps = 55/339 (16%)

Query: 47  YMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS 106
           +      S PK   ++S +    + + L+ +  +       +  +  S+ S+ ++ +   
Sbjct: 77  WRRQTDTSVPKAMSLSSAKSVSESRELLLQKMVEVMRVQRKSYRTEQSYLSWVERYLDFH 136

Query: 107 GDFDYRKITTKHIRSGVESRKHTPSSA-IQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165
            + ++         S +  +K   +S   Q   ++   F++ +  E   +    SV    
Sbjct: 137 KEGEFDAQEVSSFISHLAVQKCVAASTQNQAFNALVFFFRYVLEIELGDL--SQSVRAV- 193

Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FS 223
           RK +    +T+++++   +       P L    +   GLR S++ R  ++ L       +
Sbjct: 194 RKEKLPLVYTRDEVKAIMANME--GVPLLMARLIYGGGLRHSEAYRLRIKDLDRGRMCLT 251

Query: 224 IKTQKTGTIITVELPDGFMKLLAMT----------------------------------- 248
           I+  K      V L    +  +                                      
Sbjct: 252 IRGAKGDKDREVPLGKSLLPAIDEQLERIRKLYDEDRTNDVAGCYLPHTLENKSPNVGKE 311

Query: 249 -------PIGKETFFINN---DKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATI 296
                  P    +         +  +++   +  +K    KAG+    + H +R   AT 
Sbjct: 312 WGWFWLFPADNLSLDPRANKIRRHHVSSNYLNGPYKKALRKAGIVKAGTVHTLRHSFATH 371

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335
             + G     L    G   V   + YT      +L + +
Sbjct: 372 ILEDGYDIRVLQELLGHSDVSTTQIYTHVMGVHKLNVTS 410


>gi|120599713|ref|YP_964287.1| phage integrase family protein [Shewanella sp. W3-18-1]
 gi|120559806|gb|ABM25733.1| phage integrase family protein [Shewanella sp. W3-18-1]
          Length = 339

 Score = 86.2 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 45/326 (13%), Positives = 88/326 (26%), Gaps = 43/326 (13%)

Query: 24  YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAH 83
                  RR+R  +  ++  +  Y   +      + ++ +  +   +L W I +      
Sbjct: 16  RVAGRDSRRVRKVFTTKAEAL-GYERYILKEVDDKPWLGNATQDNRSL-WEIMQ-----R 68

Query: 84  WGSLAVNSRIS---FESYFDQIIRKSGDFDYRKITTKHIRSGVESR-------------K 127
           W  L                 I    G+    K+T     +  + R             K
Sbjct: 69  WHDLHGQQLTDPEKRMRKLRLICDGLGNPIASKLTVNDFATFRQMRLDGEIADGMGIKQK 128

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             P +       +  +F    R   +   NP   +   K     +     E++    +  
Sbjct: 129 VKPHTVNHEHAYLSAVFSELKRLGEWTLPNPLEGLSHFKIDEMELAFLYAEEIPLVLAEC 188

Query: 187 SEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
                P L    +  L +G R S++       + NN  +    K     TV +       
Sbjct: 189 DNSKNPHLTIVVKICLSTGCRWSEAESLRGSQVVNNRITFIKTKGKKNRTVPISKALADE 248

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV----NKSAHGVRKFSATISADA 300
           +   P  +   F          +     F     + G+     +  H +R   A+     
Sbjct: 249 I---PQSRGPLF----------SSCRKAFAQAIKRTGLTFPEGQMTHILRHTFASHFMMN 295

Query: 301 GATAHELMATYGWKTVDQAETYTKGA 326
           G     L    G   + +   Y   A
Sbjct: 296 GGNILVLKQILGHADIKETMRYAHFA 321


>gi|317501527|ref|ZP_07959724.1| integrase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|316897082|gb|EFV19156.1| integrase [Lachnospiraceae bacterium 8_1_57FAA]
          Length = 397

 Score = 86.2 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 62/377 (16%), Positives = 109/377 (28%), Gaps = 59/377 (15%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
            ++ K     G   Y +          P P      P+            E       K 
Sbjct: 24  KYLYKYVDAFGNTKYVYAWRLTP--TDPTPKGKREKPSLRELEQQIRRDIEDGIDSTGKK 81

Query: 69  TTLKWLISEY-RKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRSGVESR 126
            T   L   Y +++A   ++  ++    E     +   K G      I     +      
Sbjct: 82  MT---LCQLYAKQNAQRANVKKSTIKQREQLMRLLKEDKLGARSIDTIKPSDAKEWALRM 138

Query: 127 KHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPC--LSVERPKRKTEGIRPWTKEDMQQ 181
           K      ++      S++  F  A++ + V  NP      E  +  T+     T+E  Q 
Sbjct: 139 KDKGFSYNTINNHKRSLKASFYIAIQDDCVRKNPFDFKLSEVLENDTKEKVALTEEQEQA 198

Query: 182 FKSFWSEGSQPRLAFE---FLLYSGLRCSDSCRAGVQHLQ----------------NNIF 222
             SF    +     ++    LL +GLR S+ C   V  +                    +
Sbjct: 199 LLSFIKTDNVYHKYYDDVLILLKTGLRISELCGLTVADIDFKNEVVIIDHQLLKSKEQGY 258

Query: 223 SIKTQKTGTIIT-VELPDG----FMKLLAMTPIG--------KETFFINNDKQKMNATQF 269
            I+T KT + I  V L       F +++   P              F+N+  +   A  +
Sbjct: 259 YIETPKTKSGIRQVPLSRETIQAFQRVMKKRPKAEPFVIDGRGNFLFVNHKDKPKVAIDY 318

Query: 270 SIWFKAKATKAGVNK--------SAHGVRKFSATISADAGATAHELMATYGWKTVD---- 317
           +  F     K   +         + H +R    T  A       +L    G   +     
Sbjct: 319 NALFVRMVKKYNKHHKDNPLPHITPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISITMN 378

Query: 318 ---QAETYTKGADRIRL 331
               A   T  ++  RL
Sbjct: 379 WYAHASIDTAKSEVQRL 395


>gi|303236846|ref|ZP_07323425.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
 gi|302483014|gb|EFL46030.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
          Length = 439

 Score = 86.2 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 50/306 (16%), Positives = 103/306 (33%), Gaps = 23/306 (7%)

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK 113
           +T     +   R +  ++K  + + R    + +L  + R   E   ++ ++        +
Sbjct: 98  ATNPTTLLAMSRAELQSVKESVGKSRAEGTYLNLFHSDRNLREFVENKGVQDIPIGTITE 157

Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
              +  R  ++ R +   +  + L  +  L   AV Q  +  NP  + +  K   + IR 
Sbjct: 158 DLFEEYRFFLKKRGYAAPTINRHLCWLSRLMFRAVSQRIIRCNPFENAKYEKEDRK-IRF 216

Query: 174 WTKEDMQQFKSF---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---NNIFSIK-- 225
             K ++ +  +      E    RL F F  ++GL  SD      +H Q   +    I+  
Sbjct: 217 LQKSEVTKLVAMKMNDRETELARLMFVFSCFTGLAISDMENLEYRHFQTAADGQQYIRKE 276

Query: 226 TQKTGTIITVELPDGFMKLL----AMTPIGKETFFINNDKQKM------NATQFSIWFKA 275
            QKT     V L      ++          +E   +     ++      + +        
Sbjct: 277 RQKTKVEFIVPLHPIAEAIISHCRKEQERSEEHLMVKEKGDRLVFHRDCSRSVMDTKLSI 336

Query: 276 KATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
                G+    S H  R    T+S  AG     +    G  ++   + Y +  D      
Sbjct: 337 VGKACGIRERLSYHMARHTFGTMSLSAGIPIESIAKMMGHASISSTQIYAQVTDSK--IS 394

Query: 334 KNSRRI 339
           ++  R+
Sbjct: 395 EDMDRL 400


>gi|269967891|ref|ZP_06181932.1| site-specific recombinase IntI [Vibrio alginolyticus 40B]
 gi|269827489|gb|EEZ81782.1| site-specific recombinase IntI [Vibrio alginolyticus 40B]
          Length = 320

 Score = 86.2 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 66/213 (30%), Gaps = 52/213 (24%)

Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225
            + +     T+E++++F        + RL  + L  SGLR  +  R  VQ +  +  +++
Sbjct: 98  TEKKLPVVLTREEIRRFVQHIDP--RYRLHIQLLYGSGLRVMECLRLRVQDIDYDYGAVR 155

Query: 226 --TQKTGTIITVELPDGFMKLLAMTPIGKETFFINND----------------------- 260
               K G   TV L     + L         ++  +                        
Sbjct: 156 VWQGKGGKNRTVTLAKELHEPLKAQVNLARNYYFKDRHMPGYAGVYISEGLRRKYPKAEL 215

Query: 261 -----------------------KQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSAT 295
                                  +  +N +      K  A+ A + K+   H +R   AT
Sbjct: 216 DFNWHFLFPSTKLSADRDTGELRRHHINESAIQRAVKRAASDASIEKTVTCHTLRHSFAT 275

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADR 328
              ++GA    +    G   V   + YT   +R
Sbjct: 276 HLLESGADIRTVQEQLGHTDVKTTQIYTHVIER 308


>gi|239908837|ref|YP_002955579.1| phage integrase family protein [Desulfovibrio magneticus RS-1]
 gi|239798704|dbj|BAH77693.1| phage integrase family protein [Desulfovibrio magneticus RS-1]
          Length = 384

 Score = 86.2 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 53/359 (14%), Positives = 108/359 (30%), Gaps = 39/359 (10%)

Query: 16  TRHGKIIYYFR-KGHGRRIRLP-YPHESTFIPAYMSALTGSTPKREYINSPRKKPT---- 69
            R GK  +  + +  G+ + +  +   +     Y  A+      R+ + +  +       
Sbjct: 6   KRRGKDRWRAQVRMDGKSVAIKWFGSGAKGGKEYRQAVAWEEETRKALEAMPEPEIPTVS 65

Query: 70  -TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG-DFDYRKITTKHIRSGVESRK 127
            T++   + Y         A ++     + F  + R  G DF+   +T       ++ + 
Sbjct: 66  LTIRDWANAYLDEVQ-RRRAKSTYSEARTAFKYLGRTLGPDFEMSSLTPTEALKHLDIQN 124

Query: 128 HTPS--SAIQFLTSMRVLFKWAVR---QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
            T S  +A +   ++   + WA +         NP L V+R     +        ++  +
Sbjct: 125 DTRSGSAANKDRKNLSRGWNWAKKFLPNFPQTPNPFLQVDRYPITRKPRYV--PPEVDYW 182

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTG----TIITVE 236
           K   +   Q  +      + G R  +  R     +        + T+KT         + 
Sbjct: 183 KVMATLEGQDEVMLTAFFHLGARRGEIFRLKWADVDFGGERVRLATRKTADGSYKHDWIP 242

Query: 237 LPDGFMKLLA-----MTPIGKETFFINNDKQKMNATQFSIWFK-------AKATKAGVN- 283
           +       L            E  F      +         F+           +AGV  
Sbjct: 243 MTQELKARLMWWWENRRHKQSEYVFTVTGDYRFENQWEGEPFRYRQHFMDKLCERAGVKP 302

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA----DRIRLGIKNSRR 338
              H +R  SA +   AG     + A          E Y K      D+++  +K    
Sbjct: 303 FGFHAIRHLSAVVLYQAGYPVAMIQAILRHDNATTTEKYLKRLGLDPDKLKTAVKAFEN 361


>gi|187939834|gb|ACD38974.1| phage integrase [Pseudomonas aeruginosa]
          Length = 367

 Score = 86.2 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 58/359 (16%), Positives = 107/359 (29%), Gaps = 47/359 (13%)

Query: 7   LPPFVTKERT-RHGKIIYYFRKGHGRRIRLPYPHES----TFIPAYMSALTGSTPKREYI 61
           LPP + K+   R G   Y +R     R+      ++      I A  +     T      
Sbjct: 13  LPPNLYKKTDSRSGVTYYAYRDPVSGRMFGLGKDKARAIREAIEANHTESLQPTIADRLS 72

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121
           + P + P      ++EY K      LA  S  +      ++  + G  D R I T  +  
Sbjct: 73  SEPSRPPRLFDDWLTEYEKIYVERGLAAASVRNTRMRLKRLRARFGTMDIRDIGTIDVAG 132

Query: 122 GVESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
                        A    + +R +F  ++   +   NP   V +  R        T E  
Sbjct: 133 YFSEMAKEGKAQMARAMRSLLRDVFMESMAAGWTDKNPVE-VTKAARVKIKRERLTLETW 191

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239
           +   +   +    R A E  + +G R  D      +  Q+    +   KTG  + +    
Sbjct: 192 RLIYAEAKQPWLKR-AMELAVITGQRREDLAAMQFKDEQDGYLQVVQSKTGMRLRISTSI 250

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--------------- 284
           G   L         +   +   + ++             KAG                  
Sbjct: 251 GLAVLGLDL----SSVIKSCRGRVLSRYMIHHHRTISRAKAGQPIMLDTISAAFADARDR 306

Query: 285 --------------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY--TKGAD 327
                         S H +R  +A +  + G    +     G ++    + Y  ++GA+
Sbjct: 307 AAKKHGLDFGASPPSFHEMRSLAARLHEEEG---RDAQRLLGHRSAKMTDLYRDSRGAE 362


>gi|149912617|ref|ZP_01901151.1| site-specific recombinase, phage integrase family protein
           [Roseobacter sp. AzwK-3b]
 gi|149813023|gb|EDM72849.1| site-specific recombinase, phage integrase family protein
           [Roseobacter sp. AzwK-3b]
          Length = 320

 Score = 86.2 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 44/298 (14%), Positives = 100/298 (33%), Gaps = 22/298 (7%)

Query: 45  PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI-- 102
            A ++A       R+ + S  K     + ++S       W      +R SF    + +  
Sbjct: 5   EARVAATEALKAMRDGVFSSDKASRLFEDVLS------DWYDREQRNRKSFRQVENAMKL 58

Query: 103 --IRKSGDFDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPC 158
             +      + + I    +   ++    +   + A +    ++  F WA  ++ +  +P 
Sbjct: 59  HALPHLKGREIQDIRKADLVRIIDRVADSGARTQANRVRAFIKRYFAWACERDLLDFSPA 118

Query: 159 LSVERPKRKTEGIRPWTKEDMQQF-KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217
            S+ +   +    R  T+ +++    +  + G       + L+ +  R  +        L
Sbjct: 119 ASLPKVGGEQSRDRVLTESELRSVWYAADAIGYPFGPIVKLLILTAQRRDEVAGMTWSEL 178

Query: 218 QNNIFSIK----TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF 273
             +  +        K G   TV L      +L   P   ++ F+         + FS   
Sbjct: 179 DLDRGTWTIGAERAKNGQTHTVHLSPAAQAILEQIPQRSDSDFVFTTTGTSAVSGFSKAK 238

Query: 274 KAKATKAGVN-KSAHGVRKFSATISADAGATAHELMA-TYGWKTVDQ---AETYTKGA 326
                 + VN    H +R+ +AT+ A+     H ++      ++      A  Y +G 
Sbjct: 239 ARLDQLSAVNEWRLHDLRRTAATMMAERLEVGHAVVDKVLNHRSGAIRGVAAVYLRGQ 296


>gi|313637890|gb|EFS03211.1| tyrosine recombinase XerC [Listeria seeligeri FSL S4-171]
          Length = 291

 Score = 86.2 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 35/271 (12%), Positives = 79/271 (29%), Gaps = 23/271 (8%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
            I +Y     + +L+ N+            ++       K         +       S+A
Sbjct: 7   YIEKYIDFLSYKNLSSNTIKKSNVVLTNFFKERNSISITKNEQYEYIEMLL-NTVKKSTA 65

Query: 134 IQFLTSMRVLFKWAVRQEYVAI---NPCLSVERPKRKTEGIRPWTKEDM----QQFKSFW 186
             ++  +   + +     +V     N   +V   +   + I     E++    ++ K+  
Sbjct: 66  YDYIRILNKFYDY--IHTFVDSSIANLFENVSFKRTPAQNISVLYSEEILELYERIKNDN 123

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFM-KL 244
              +     F+FL  +G+R S+     +  +   N   + T K      +   D    KL
Sbjct: 124 RVTAYQEFIFDFLFSTGIRVSELSSIKINLIDLENRTILITGKGNKERIIFYNDKLEHKL 183

Query: 245 LAMTPIGKE-----------TFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFS 293
           +    +  +            F      + +                 +N   H +R   
Sbjct: 184 IRFLKLRHQIMEFNKKYHSYLFIKLTTGKPVTNNFIYYEIVKIGKLYDINLHPHTLRHSF 243

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324
           AT   + G     +    G  ++   + YT 
Sbjct: 244 ATNLLENGCDIRYIQEFLGHSSILTTQRYTH 274


>gi|283455539|ref|YP_003360103.1| Integrase/recombinase (XerD/RipX family) [Bifidobacterium dentium
           Bd1]
 gi|283102173|gb|ADB09279.1| Integrase/recombinase (XerD/RipX family) [Bifidobacterium dentium
           Bd1]
          Length = 367

 Score = 86.2 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 51/322 (15%), Positives = 103/322 (31%), Gaps = 50/322 (15%)

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128
           TTL  L   +  +      A N+  ++ + + + + +       + T   +++ ++    
Sbjct: 49  TTLGDLAGLWLATQ--TGKAENTINAYTNAYRKYVSRLDSLTIAEATPLVLQTFLDGVAG 106

Query: 129 TPSSA--IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185
              SA        +  + + AV Q  +  NP   ++R  R  EG      + +Q+F    
Sbjct: 107 GSGSATVSMVKLVLSGMMEMAVAQGAILHNPVRDLKRMSRHREGSVAIPADKVQKFLKAV 166

Query: 186 ----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-------NNIFSIKTQKTG---- 230
               W            +LY+GLR  ++C      +            +I+ +  G    
Sbjct: 167 ETNEWLVSHDEADIIRLMLYTGLRVGEACGLCWDCVDFTAGTLSVERIAIRCKGEGMTLQ 226

Query: 231 -------TIITVELPDGFMKLLA---------MTPIGKETFFINNDKQK------MNATQ 268
                  +  T+  P   M +L            P      F              +   
Sbjct: 227 AHPKTEHSRRTITAPKSIMHMLELRRISLDTGGIPNPHNLVFPRPLSGGSCEYLVRSPNV 286

Query: 269 FSIWFKAKATKAGVNK----SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYT 323
            +   + +    G  K    S H +RK  A++  DAG    ++    G       E  Y 
Sbjct: 287 VASDLRREREALGFGKGESLSPHSLRKTCASLLHDAGLNTLDVADYLGHSDTATTENVYI 346

Query: 324 KGADRIRLGIKNSRRISSVVDS 345
               R R   K +  + +++++
Sbjct: 347 A---RGRNSGKAANALETMIEN 365


>gi|170767791|ref|ZP_02902244.1| site-specific recombinase, phage integrase family [Escherichia
           albertii TW07627]
 gi|170123279|gb|EDS92210.1| site-specific recombinase, phage integrase family [Escherichia
           albertii TW07627]
          Length = 387

 Score = 86.2 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 84/220 (38%), Gaps = 24/220 (10%)

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +  + ++    L+ ++ L + A  +E+  ++    ++ P+ K + IR     + Q+    
Sbjct: 139 KPASVATKATHLSFIKALLR-AAEREWKMLDKAPIIKVPQPKNKRIRWLEPHEAQRLIDE 197

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGF 241
             E  +     EF L +GLR S+      Q +         + +  K+   I V L D  
Sbjct: 198 CPEPLKS--VVEFALATGLRRSNIINLEWQQIDMQRRVAWINPEESKSNRAIGVALNDTA 255

Query: 242 MKLLAMTPIGKETFFINNDK--------------QKMNATQFSIWFKAKATKAGVNK-SA 286
            ++L    IG    ++   K              +KM     + W KA   +AG++    
Sbjct: 256 CRVLKKQ-IGNHHRWVFVYKESCTKPDGTKAPTVRKMRYDANTAW-KAALRRAGIDDFRF 313

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           H +R   A+    AG     L    GW++++    Y   A
Sbjct: 314 HDLRHTWASWLVQAGVPLSVLQEMGGWESIEMVRRYAHLA 353


>gi|116255542|ref|YP_771375.1| putative phage integrase/recombinase [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115260190|emb|CAK03294.1| putative phage integrase/recombinase [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 331

 Score = 86.2 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 42/293 (14%), Positives = 91/293 (31%), Gaps = 46/293 (15%)

Query: 74  LISEYRKS--AHWGSLAVNSRISFESYFDQIIRKSG--------DFDYRKITTKHIRSGV 123
           LI  +     A   +++ ++  S+   F   ++ +         D        + + + +
Sbjct: 8   LIERFFGQRLARQRNVSPHTIASYRDTFKLFLKFAHRRTGKFPSDLRLEDFDAELVVAFL 67

Query: 124 E----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC--------LSVERPKRKTEGI 171
           +     R  +P++    LT++R  F++   +E     P         L++         +
Sbjct: 68  DDLDSERHASPATYNLRLTAIRSFFRFLAFEE-----PAYSGQIQRILAIPGKIGSKREV 122

Query: 172 RPWTKEDMQQFKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKT 226
           +  T+ +++   S        G +  +     + +G+R S+        +       I+ 
Sbjct: 123 QFLTRSEIEAILSAPDRRTWVGRRDYVLMLTAVQTGMRLSELVGLDRSAVTIGTGAHIRC 182

Query: 227 QKTG-----TIITVELPDGFMKLLAMTPIG-KETFFINNDKQKMNATQFSIWFKAKATKA 280
              G     T IT  L       L   P+G     F      +M+              A
Sbjct: 183 FGKGRKERTTPITRMLNVTLKAWLDEPPVGNGNALFPTVHGGRMSPDAVQYLLAKYVLTA 242

Query: 281 GVNKS--------AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
               S         H +R  +A    DAG  +  +    G ++    + Y   
Sbjct: 243 SKGCSSLRSKRISPHVLRHSAAMELLDAGVDSTVISLWLGHESTRSTQPYLHA 295


>gi|307275978|ref|ZP_07557111.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX2134]
 gi|306507308|gb|EFM76445.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX2134]
          Length = 382

 Score = 86.2 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 52/350 (14%), Positives = 119/350 (34%), Gaps = 43/350 (12%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTP-----KREYINS 63
            +V     + G   + +R  +   ++           +  +A           + +  + 
Sbjct: 11  KYVFSYSNKKG-TFWGYRYPYYNSLKHRKEASKRGFESERAANKALLKIQYDLETQNTSF 69

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIR-- 120
              K  T+   I  +   A   + +V+++ + ES     I    G+     +     +  
Sbjct: 70  VENKQLTIDEWIKVWIPYAQ-DNWSVSTKQNIESAVKFHISPLIGNQKLSSLNKITYKRE 128

Query: 121 ---SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
                 +  K+T S+   +   +  +   AV  + +  N     +     +  +R ++K+
Sbjct: 129 FIDKLRQENKYTESTIQTWHKIVMRMINAAVHNQIIPSNTLTGFKF--DLSNNVRSFSKK 186

Query: 178 DMQQFKSFW-SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ------------NNIFSI 224
           ++Q+F +    E  Q ++ F  LL SG+R  +        +              +    
Sbjct: 187 ELQRFVAVLEKEDIQTQVIFLTLLKSGMRKGELMGLRWSDIDLTEKYFDINSTRGDYGEN 246

Query: 225 KTQKTGTIITVELPDGFMKLLAMTP--------------IGKETFFINNDKQKMNATQFS 270
           K +   +I  V   +  + L+                    K+ F +++    +  ++ +
Sbjct: 247 KPKTKTSIRKVYFDNSLLTLIKKYKNHEKERLFREGIILSDKDYFILSSRNLPIKQSRIT 306

Query: 271 IWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
             F+    KA V N + HG+R   AT   +AGA    +    G K ++  
Sbjct: 307 YMFRLLCEKAEVQNITVHGLRHTHATFLIEAGANIKYVSTRLGHKNINIT 356


>gi|300817238|ref|ZP_07097456.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 107-1]
 gi|300530214|gb|EFK51276.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 107-1]
          Length = 387

 Score = 86.2 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 84/220 (38%), Gaps = 24/220 (10%)

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +  + ++    L+ ++ L + A  +E+  ++    ++ P+ K + IR     + Q+    
Sbjct: 139 KPASVATKATHLSFIKALLR-AAEREWKMLDKAPIIKVPQPKNKRIRWLEPHEAQRLIDE 197

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGF 241
             E  +     EF L +GLR S+      Q +         + +  K+   I V L D  
Sbjct: 198 CPEPLKS--VVEFALATGLRRSNIINLEWQQIDMQRRVAWINPEESKSNRAIGVALNDTA 255

Query: 242 MKLLAMTPIGKETFFINNDK--------------QKMNATQFSIWFKAKATKAGVNK-SA 286
            ++L    IG    ++   K              +KM     + W KA   +AG++    
Sbjct: 256 CRVLKKQ-IGNHHRWVFVYKESCTKPDGTKAPTVRKMRYDANTAW-KAALRRAGIDDFRF 313

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           H +R   A+    AG     L    GW++++    Y   A
Sbjct: 314 HDLRHTWASWLVQAGVPLSVLQEMGGWESIEMVRRYAHLA 353


>gi|282881427|ref|ZP_06290103.1| site-specific recombinase, phage integrase family [Prevotella
           timonensis CRIS 5C-B1]
 gi|281304725|gb|EFA96809.1| site-specific recombinase, phage integrase family [Prevotella
           timonensis CRIS 5C-B1]
          Length = 378

 Score = 86.2 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 50/285 (17%), Positives = 91/285 (31%), Gaps = 45/285 (15%)

Query: 85  GSLAVNSRISFES---YFDQIIRKSGDFDYRKITTKHIRSGVE---SRKHTPSSAIQFLT 138
           G L   +  ++E      + +        + K     I + ++    +    S+  + L 
Sbjct: 91  GKLNDWTSATYEKFAALRNHLFTFDNKLTFDKFDEDGIANFIDYLGKKGMKNSTINKQLG 150

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRK--TEGIRPWTKEDMQQFKSF-----WSEGSQ 191
            +R   +W   + Y   N      +PK K  T+ +   T E++   ++F     +     
Sbjct: 151 FLRWFLRWCYEKGY-HTNHTFEYYKPKLKNTTKRVVFLTAEELNTLETFQIPDKYVALGP 209

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251
            R  F F  Y+GLR SD+C      + N    I T KT   + +E+      +L      
Sbjct: 210 VRDVFLFTCYTGLRYSDACNLTWDDIHNGKIEIVTVKTSDRLLIEINSKAQAILDKYTEI 269

Query: 252 KET---FFINNDKQKMNATQFSIWFKAKATKAGVNKSA---------------------- 286
                        QKMN    ++        AG+++S                       
Sbjct: 270 HFPNMKVLPVVSNQKMNKHLHTL-----CKLAGIDESIKSTHYEGNKRVDEVHPKYELIG 324

Query: 287 -HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
            H  R+     +   G     +M   G       + Y   AD ++
Sbjct: 325 THCGRRTFICTALAKGIPPSVVMKWTGHSDYKAMKPYIDIADEVK 369


>gi|269962570|ref|ZP_06176917.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269832683|gb|EEZ86795.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 445

 Score = 86.2 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 46/317 (14%), Positives = 100/317 (31%), Gaps = 37/317 (11%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD 110
           L+        I S   K      L+  + +S    ++   +           +      +
Sbjct: 116 LSNLETTEPSIKSIPSKVVPFAQLLKRFLESKEKRNVRQLTVHQLNKRITHCLNFLETQN 175

Query: 111 YRK--ITTKHIRSGVE---SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV---- 161
             +  +   H+   ++   S   +  +  ++  +++  F W  R+ Y+  NPC  +    
Sbjct: 176 VNRNTVGISHLEEYIDLLYSESRSSKTNKEYFAAVKQFFNWLKRKRYILENPCEDLNPKF 235

Query: 162 ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE----FLLYSGLRCSDSCRAGVQHL 217
           +  +  +E    W+ ++++   +     +   L F+      L+ GLR  ++C+  +Q +
Sbjct: 236 KSKQHASEQRERWSNDELKTLINS-PAFALQSLDFQWITKLQLFHGLRTGEACQPYIQDI 294

Query: 218 --QNNIFSIKTQ--------KTGTIIT-VELPDGFMK-----LLAMTPIGKETFF----- 256
              + I   +          K    +  V L             +    G    F     
Sbjct: 295 VIDDGIPYFRVTDQSKDQHLKNEHAVRNVPLHPEIRDDFIIFCESRIHKGNAPLFNYSPL 354

Query: 257 -INNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKT 315
            ++ D  K   TQF          AG   +A+G+R        +     H +    G   
Sbjct: 355 GVDKDWTKTYRTQFGKLQTRLGMPAGKRPTAYGLRHTFIDELKEQDVPEHSVAELVGHVN 414

Query: 316 VDQA-ETYTKGADRIRL 331
            +     Y K     +L
Sbjct: 415 SNMTFGRYGKKHKLEKL 431


>gi|166033434|ref|ZP_02236263.1| hypothetical protein DORFOR_03160 [Dorea formicigenerans ATCC
           27755]
 gi|166026619|gb|EDR45376.1| hypothetical protein DORFOR_03160 [Dorea formicigenerans ATCC
           27755]
          Length = 403

 Score = 86.2 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 52/385 (13%), Positives = 105/385 (27%), Gaps = 73/385 (18%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKGH--GRRIRLPYPHESTFIPAYMSALTGSTPKREYI 61
              +P +     T  G   Y  R     G+ + L            + A         + 
Sbjct: 5   KTEVPKY--GTITLKGIQYYRTRITDADGKEVSLYATTCEELYEKQLEARKQVEEIIFHR 62

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIR 120
             P       KWL+ +   SA    ++ ++   +     + II+  G+    ++T   IR
Sbjct: 63  QHPTVAEYGEKWLLMQ---SAK---VSASTLRGYTRDMTNYIIKPLGEMYMEEVTADDIR 116

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGI-RPWTKED 178
             +             +  +     +A  + + +  NPC+ +     K        T + 
Sbjct: 117 LALVPLSKKSEGLYNKVNMLLKCIFYAAERNQILEHNPCVGISGKGGKPTKKKEALTDQQ 176

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQ------- 227
           +         G  P L     LYSGLR  +        +         S++         
Sbjct: 177 VAVLLDTVK-GLPPYLFIMLGLYSGLRREEILALQWDCVFLDEDTPYLSVRRAWRTEHNR 235

Query: 228 -------KTG-TIITVELPDGFMKLLAMTPIG--KETFFINNDKQKMNATQFSIWFKAKA 277
                  KT      + +P   ++ L         +    ++  + + A+QF   ++   
Sbjct: 236 PVISTVLKTPAAKRDIPIPKCLVECLREAKENSISDYVIADSKGEPLAASQFQRVWQYVV 295

Query: 278 TK-----------------------AGV--------------NKSAHGVRKFSATISADA 300
            +                        G+              + + H +R    T    A
Sbjct: 296 VRSTKPRNYYKYVNGESIKYTVTPTLGLTQKNQPKIKYTLDFDVTPHQLRHTYITNLLYA 355

Query: 301 GATAHELMATYGWKTVDQA-ETYTK 324
           G     +    G +      + Y K
Sbjct: 356 GVDPKTVQYLAGHENSKTTMDIYAK 380


>gi|326790277|ref|YP_004308098.1| integrase family protein [Clostridium lentocellum DSM 5427]
 gi|326541041|gb|ADZ82900.1| integrase family protein [Clostridium lentocellum DSM 5427]
          Length = 311

 Score = 86.2 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 41/269 (15%), Positives = 95/269 (35%), Gaps = 19/269 (7%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           TLK L  ++ K+    +L+  +   +++ +  +     +    +I  + +R  +   + T
Sbjct: 15  TLKELYDDFEKNCRIRNLSSETIKYYQNCYHILCNYKPEVYLDEINNEFVRDYILYLQQT 74

Query: 130 --PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
             P+S    L  +R +   A     +   P L +++ K   E    +T+E +++     +
Sbjct: 75  MKPTSVNCQLRGLRSICNHAFDLGLM---PKLIIKQLKYDKEVRETYTEEQIKKLIKKPN 131

Query: 188 EGS------QPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPD 239
                    +  +   + + +G R        ++ +   N +  ++  K      + L  
Sbjct: 132 LKKCGFVEYRNWVIVSWFIATGNRIGTVLEIKIKDVDLANQLVVLRHNKNRNQNIIPLCS 191

Query: 240 GFMKLL-----AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFS 293
              K+L            +  F   D  +++        +      GV+  S H  R++ 
Sbjct: 192 SICKILSEYLQYRKGEADDYLFCAMDGSRLSKRSLQCSIQKYNRDRGVSIASCHAFRRYF 251

Query: 294 ATISADAGATAHELMATYGWKTVDQAETY 322
           A      G     L     WK++D  + Y
Sbjct: 252 AKQCVLNGVDIFTLQKLGNWKSLDVVKNY 280


>gi|265766611|ref|ZP_06094440.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_16]
 gi|263252988|gb|EEZ24464.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_16]
          Length = 403

 Score = 86.2 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 49/299 (16%), Positives = 99/299 (33%), Gaps = 51/299 (17%)

Query: 83  HWGS--LAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESRKHTPSSAIQ 135
            W    +   +  +++S +  + +  G  + +     H      R  +     T ++   
Sbjct: 115 EWKKSIMKNGTAAAYQSTYASLAKYIGKKEVKISQVNHRFVTCYRDFLSKNGATENTIGY 174

Query: 136 FLTSMRVLFKWAVRQEYVA----------INPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +L + R L+  AV+   V             PC +V+R            +E M +  + 
Sbjct: 175 YLRNFRALYNLAVKDGLVPPCDYPFKEICTKPCKTVKR---------ALDREQMVKL-AC 224

Query: 186 WSEGSQPRLAFEFLLYS------GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239
            S  S   L     L+       G+   D      +++  N    +  K+  +I + +  
Sbjct: 225 LSLHSDAELKRSLDLFLFGFYAQGMAFVDIAYLKWKNISGNRIIYRRHKSKQLIQIVITP 284

Query: 240 GFMKLLA----MTPIGKETFF------INNDKQKMNATQFSIW-FKAKATKAGVN--KSA 286
               ++      T   +E  F       N   Q   A   +    K  + K  ++   + 
Sbjct: 285 QIKSIIDEHGNNTNNAEEYVFSVIKNNANEYTQYRTALGRTNRHLKIISAKLKIDPPLTT 344

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345
           +  R   AT++ + GA    + A  G    +    Y K  D   L      RI+ +V++
Sbjct: 345 YTARHTWATLAREYGAPVSAISAGLGHTKEEMTLVYLKELDLAPL-----HRINKMVNN 398


>gi|260753463|ref|YP_003226356.1| site-specific tyrosine recombinase XerC [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
 gi|258552826|gb|ACV75772.1| integrase family protein [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
          Length = 307

 Score = 86.2 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 45/283 (15%), Positives = 94/283 (33%), Gaps = 29/283 (10%)

Query: 74  LISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFD--------YRKITTKHIRSGVE 124
           L +++ +   +    + +S  ++ +   + I   G+           +K     IR+ + 
Sbjct: 16  LATQWEQYLQFSLRRSPHSIRAYMATVHRFISFLGNHRGDLIDKNTLQKTDIAEIRAFLA 75

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
            R+ +  +       +  +  +     ++ ++P  +++  + K    RP + ED      
Sbjct: 76  YRRQSGLANSSVAREISGIRAFLR---FIGLDPIPAIKGARVKKGIPRPLSPEDAVALAK 132

Query: 185 FWSEGS-------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237
             SE +       +       L  SGLR S++     + L          K   I  V L
Sbjct: 133 EASEEASEQWIEARDLALLLLLYGSGLRISEALNLTCEILPLQTTLRVVGKRSKIRIVPL 192

Query: 238 PDGFMKLLAM-------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHG 288
            +   + +            G + FF       ++A       +      GV+   + H 
Sbjct: 193 LEKVKRAMETYVRLCPYAFSGSQPFFRGAKGGVLSADVLRRTVRKARYHLGVDNKATPHA 252

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           +R   A+     GA    L    G  ++   + YT   D  RL
Sbjct: 253 LRHSFASHLLGRGADLRSLQELLGHASLSSTQIYT-AVDAARL 294


>gi|217965870|ref|YP_002351548.1| Int [Listeria monocytogenes HCC23]
 gi|217335140|gb|ACK40934.1| Int [Listeria monocytogenes HCC23]
 gi|307569587|emb|CAR82766.1| integrase [Listeria monocytogenes L99]
          Length = 392

 Score = 86.2 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 55/361 (15%), Positives = 113/361 (31%), Gaps = 56/361 (15%)

Query: 20  KIIYYFRKG-----HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           K  +  R        G  IR+P    +         L     + E          T +  
Sbjct: 15  KTGWRMRVTVGYNEKGTPIRVPRFTTTKNAAQREKELAAFIDELEKTGYTAPSNLTFREF 74

Query: 75  IS-EYRKSAHWGSLAVNSRISF-ESYFDQIIRKSGDFDYRKITTKHIRSGVESR------ 126
           +  E+       +L+ ++   + E    +I    G     KITT  I + ++        
Sbjct: 75  VETEWLVKHVPANLSYDTGHDYYEQIKRRIYPVLGGVALSKITTLQIVNLIDDLQKSGKR 134

Query: 127 ----------KHTPSSA---IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
                     K  P SA        ++  + + A +   ++INP   V+ P RK      
Sbjct: 135 LEDSDNKRGVKDKPLSAHSIRNIYYALSSVLEVARKWRVISINPAKGVDLPSRKKRAHTI 194

Query: 174 WTKEDMQQ-FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-------------- 218
           +  E ++Q +++  +E  Q ++     + +G R ++      +H+               
Sbjct: 195 YQGESLEQMYEALKTEPLQFQVMIYIAVVTGCREAELVALERKHIDELSNKILFEQTIID 254

Query: 219 ---NNIFSIKTQKTGTIITVELPDGFMKLL-----AMTP-----IGKETFFINNDKQKMN 265
                +  +   K      V++P     L+      + P      G    F +   +   
Sbjct: 255 VVGEGVRVVSDTKNSVFGKVDIPQWLTDLIIQYLQDVEPGTGAWTGHHFLFADETGKPKR 314

Query: 266 ATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKT-VDQAETYT 323
                  ++    +  + +   H +R  SAT+    G     +      K+ +  A+TY 
Sbjct: 315 PDSVYQRWRRFMERHHLPRIRFHDLRHTSATLLISQGEHIKVVQERLRHKSMITTADTYA 374

Query: 324 K 324
            
Sbjct: 375 H 375


>gi|291517466|emb|CBK71082.1| Site-specific recombinase XerD [Bifidobacterium longum subsp.
           longum F8]
          Length = 259

 Score = 86.2 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 37/264 (14%), Positives = 77/264 (29%), Gaps = 13/264 (4%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFL 137
           +  S      + N+  +       + R   + D R +    + +   ++   P +     
Sbjct: 2   WLDSLKAAGYSTNTLNTRRCQMSALSRAL-EGDPRDVEGDDLLAHFAAKDWKPETRKGAK 60

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE 197
            +    F+W         +P   +   KR      P    D+    +        RL   
Sbjct: 61  NACVSYFRWLKASGRSEADPSEFLPTVKRP--EPHPRPCPDVVILTALRKATDSERLMLR 118

Query: 198 FLLYSGLRCSDSCRAGVQHLQN---NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254
                GLR  +  +   + +         +   K      V + D    L+         
Sbjct: 119 LGAECGLRRFEIAKVHSRDVMRDLVGWSLVVVGKGDKQRIVPIGDDLALLIR---SAHGY 175

Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWK 314
            F         ++      +  +   G   +AH +R   AT +  A      +    G  
Sbjct: 176 LFPGRWSGHAESSYVG---RHLSDLLGDGWTAHSLRHRYATTTYAATRDLLLVSKLLGHA 232

Query: 315 TVDQAETYTKG-ADRIRLGIKNSR 337
           +V+  + Y     DR+R  ++ +R
Sbjct: 233 SVETTQRYIAMPDDRLRAAVEATR 256


>gi|256849851|ref|ZP_05555282.1| Lj928 prophage integrase [Lactobacillus crispatus MV-1A-US]
 gi|262046902|ref|ZP_06019862.1| prophage integrase [Lactobacillus crispatus MV-3A-US]
 gi|256713340|gb|EEU28330.1| Lj928 prophage integrase [Lactobacillus crispatus MV-1A-US]
 gi|260572884|gb|EEX29444.1| prophage integrase [Lactobacillus crispatus MV-3A-US]
          Length = 399

 Score = 86.2 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 62/390 (15%), Positives = 130/390 (33%), Gaps = 65/390 (16%)

Query: 9   PFVTKERTRHGKIIYYFRKGHG-----------RRIRLPYPHESTFIPAYMSALTGSTPK 57
           P +T+ + ++GK  +  R   G            R +L    E+  +   + A  G +  
Sbjct: 7   PEITEYKLKNGKKYFRLRTYIGINPETGKVINVTRSKLKSRKEAEELRRNLKA-QGPSAL 65

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSR-ISFESYFDQIIRKSGDFDYRKITT 116
            + I + +KK  T+ ++ + + +      +  ++     +++ +    + GD    +I+ 
Sbjct: 66  SQKIETAQKK-ITVSYVYNVWLEVMK-QDVRGSTLGRLKDTWKNHTEPEFGDTYIDRISP 123

Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR---- 172
            H++  V        +    +  +  + K+A+ + + + +P   V  PK+  +  R    
Sbjct: 124 DHVQKYVNDLASKYVTYKSIVNQLHRIIKYAIFRHWCSKDPFDFVIMPKKSAKSSRDNSR 183

Query: 173 -PWTKEDMQQFKSFWSEGSQPRLAFEFLLYS-GLRCSDSCRAGVQHL------------- 217
             +  ++++ F     + S+ +  +   + S G R  ++       +             
Sbjct: 184 NFYELDELKHFLDIARDYSRMKYTYFLTVASLGCRRGEALALKWSDVDFDKRVVKIERTV 243

Query: 218 ---QNNIFSIKTQKTGTIITVELPDGF-------MKLLAMTPIGKETFFINNDKQ----- 262
               N   +I   K G    V + D          +         E  F   D       
Sbjct: 244 AKDDNGKKTIDDVKNGVHHAVPMSDNLYMILKEYREYCDEIGDHCEWIFHTKDGSYNWAQ 303

Query: 263 ----------KMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATISADA--GATAHEL 307
                     K +  Q   W K             + HG+R   AT+  D     T  ++
Sbjct: 304 QPDFWLKYLYKFDKKQCEKWNKEHPNDKKEPLRKITPHGLRHTLATLLYDGNERITPKDV 363

Query: 308 MATYGWKTVDQA-ETYTKGADRIRLGIKNS 336
               G KT   A E YT    + +  IK S
Sbjct: 364 QYVLGHKTSKTAMEIYTHVTKKQKKDIKGS 393


>gi|332178907|gb|AEE14596.1| Tyrosine recombinase xerC [Thermodesulfobium narugense DSM 14796]
          Length = 298

 Score = 86.2 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 36/272 (13%), Positives = 87/272 (31%), Gaps = 22/272 (8%)

Query: 75  ISEYRKSAHWGSL-AVNSRISFESYFDQIIR-------KSGDFDYRKITTKHIRSGVESR 126
           I ++     +  L + N+  ++ S                 + +  K+T   +     S+
Sbjct: 8   ILDFLDYLQFSKLCSNNTIRAYRSDLISWFEFLKNSKNNLNELEITKLTYDWLIEDQNSK 67

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ-----Q 181
               SS  + +++++    +  +   +     L+++ PK+     +     D+       
Sbjct: 68  LLKKSSVSRKISAVKSFLNYLYKFNVINNKLSLTLKNPKKDRILPKYLNYSDVADVINKN 127

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV------ 235
           F S      +  L    L  +G+R S+     ++ +  +   I+    G    V      
Sbjct: 128 FTSSNFYSFRNSLIILLLFNTGIRISELKNIKLEDINLDRNEIRVIGKGNKERVVFFTNF 187

Query: 236 --ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKA-KATKAGVNKSAHGVRKF 292
                  ++             FI+  K +++             T+ G + + H +R  
Sbjct: 188 TKNFLKQYITERLKLKTKCRYLFISRLKSRISERMIRYIVSNTWKTQTGKSITPHQLRHS 247

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324
            AT   + G     +    G + ++    Y K
Sbjct: 248 LATFLLNQGVELKYIQEILGHENINTTNIYAK 279


>gi|254430168|ref|ZP_05043871.1| site-specific recombinase, phage integrase family protein
           [Cyanobium sp. PCC 7001]
 gi|197624621|gb|EDY37180.1| site-specific recombinase, phage integrase family protein
           [Cyanobium sp. PCC 7001]
          Length = 261

 Score = 86.2 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 40/237 (16%), Positives = 73/237 (30%), Gaps = 19/237 (8%)

Query: 108 DFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAIN-PCLSV---ER 163
           D    +     +R  VE+    P S  + LT+   L++WA       +     +V     
Sbjct: 14  DPAIAEDAVADLRDLVEAGTLAPRSFNRRLTAWSALWRWASEANRSGVTGIARNVWPRRA 73

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSE--------GSQPRLAFEFLLYSGLRCSDSCRAGVQ 215
                +  R  T+ ++       +           +  +        G+  S+       
Sbjct: 74  LLHAPKVARALTEPELAAVTGTVAVAAAAGDCTARRDLVKLRASFLLGVCVSELRSLRWG 133

Query: 216 HLQ----NNIFSIKTQKTGTIITVELPD---GFMKLLAMTPIGKETFFINNDKQKMNATQ 268
            ++      + SI+  K G   T+ +       ++ L         F        ++   
Sbjct: 134 DVEPVEGGGLVSIRNGKGGKARTIRVSMDTVALLESLGRGDADAWLFLNPAGTAPLSRQA 193

Query: 269 FSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
            +  F     KAGV+   H +R   AT +  AG  A  L AT G  +      Y   
Sbjct: 194 IADRFSRWGKKAGVHLHPHRLRHSHATSAIRAGCDAFVLSATLGHASTATTAHYVAS 250


>gi|170741374|ref|YP_001770029.1| integrase family protein [Methylobacterium sp. 4-46]
 gi|259710434|sp|B0UNY7|XERC_METS4 RecName: Full=Tyrosine recombinase xerC
 gi|168195648|gb|ACA17595.1| integrase family protein [Methylobacterium sp. 4-46]
          Length = 320

 Score = 86.2 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 42/280 (15%), Positives = 89/280 (31%), Gaps = 31/280 (11%)

Query: 82  AHWGSLAVNSRISFESYFDQI---IRKSGDFD----YRKITTKHIRSGVESRKH---TPS 131
           A     + N+  ++     Q      ++G          +  + +R+ + +R+       
Sbjct: 28  ARERRFSPNTVEAYARDLRQFLAHRARAGTQPDIPSLVALKPRDLRAFMAARRAEGIGGR 87

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE--------DMQQFK 183
           S ++ L S+R   +   R+ +  ++   +V  PK +    RP            D++  +
Sbjct: 88  SLMRALASLRSFARHLEREGHGTVSALSAVRSPKVERRLPRPLPVAAAVALASPDIRAGE 147

Query: 184 SFWS-EGSQPRLAFEFLLYSGLRCSDSCRAGVQH-----LQNNIFSIKTQKTG-TIITVE 236
                  ++       L  +GLR  ++     +      L       K QKT    +   
Sbjct: 148 DRPDWVLARDAAVLALLYGAGLRIGEALGLRRKDAPVGGLDTLTIVGKGQKTRMVPVIAP 207

Query: 237 LPDGFMKLLAMTP---IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRK 291
           +     + LA  P         F+      ++     +   +     G+    + H +R 
Sbjct: 208 VQAALAEYLAACPYALAPDGPLFVGQKGGPLSPRVVQLAVASLRGALGLPDSATPHALRH 267

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
             AT           +    G  ++   + YTK  D  RL
Sbjct: 268 SFATHLLARQGDLRAIQDLLGHASLATTQIYTK-VDSARL 306


>gi|139438761|ref|ZP_01772245.1| Hypothetical protein COLAER_01248 [Collinsella aerofaciens ATCC
           25986]
 gi|133775841|gb|EBA39661.1| Hypothetical protein COLAER_01248 [Collinsella aerofaciens ATCC
           25986]
          Length = 435

 Score = 86.2 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 53/382 (13%), Positives = 103/382 (26%), Gaps = 71/382 (18%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
           E  ++GK + Y  K   R I     +   +     +AL     + E        PTT+  
Sbjct: 34  ESGKNGKRVRYL-KTPKRTIHCKSKNPRNWPGEVANALDAYRKELETYEPAGDMPTTVSG 92

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT----KHIRSGVESRKHT 129
              ++ +       +  S    E     I    GD     +      +     + + + T
Sbjct: 93  YAEDFHRLRESSFGSPLSFQREEYDVRHIRELFGDMPLGALRPDEIKRAYAEAISTGRFT 152

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS-FWSE 188
            +   +    ++ + + A+  E +  NPC+SV+ PK           +++ +F     SE
Sbjct: 153 EAEIRRIHVKLKQVMQDALENELIGRNPCISVKLPKPDLRVRNFLPPDELPRFTKCLLSE 212

Query: 189 GSQPRLAFEFLLYS-GLRCSDSCRAGVQHLQNNIFSIK---TQKTGTIITVE-------- 236
              P      L++  GLR  ++     +        I+          +           
Sbjct: 213 PMGPMTVCTMLIFHLGLRKGEALGLCWEDYDPEAMEIRIVHQYTNDKTLRAPKSEMSRRI 272

Query: 237 --LPDGFMKLLAMTPIGKETFFINNDKQKMNAT--------------------------Q 268
             +       L    + +   F     ++ N+                            
Sbjct: 273 LSIDSSLAAYLNDWKMRQRNLFEQRGLRQRNSDPIVHALSPHKDENGNLHVSITRPDGHN 332

Query: 269 FSIWFKAKATKAGV------------------------NKSAHGVRKFSATISADAGATA 304
           +S WF+      G                             HG+R  +AT         
Sbjct: 333 YSRWFRDFCVDNGYGEYANVTSQFERNGKLHTRGTGYSGLIPHGLRHTAATALVANNVDL 392

Query: 305 HELMATYGWKTVDQAET-YTKG 325
             + A  G  +       YT  
Sbjct: 393 KTVQARMGHASASTTANFYTHA 414


>gi|323156159|gb|EFZ42318.1| phage integrase family protein [Escherichia coli EPECa14]
          Length = 418

 Score = 86.2 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 52/359 (14%), Positives = 122/359 (33%), Gaps = 39/359 (10%)

Query: 22  IYYFRKGHGRRIRLPYPHE----------STFIPAYMSALTGSTPKREYINSPRKKPT-- 69
            Y +R    R   +   +              I A      G +P     +  +K     
Sbjct: 38  RYDYRINGRRETLVIGQYGRDGISLAEAREELIAAKKLLKAGQSPAAAKRDGIKKIRGAE 97

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVES--R 126
           T       Y K      LA ++R   ++  D+ I+   G+    +ITT  +R   +    
Sbjct: 98  TFAVHTDSYMKHVI---LAESTRAMKQAVIDRDILPVLGNKMMAEITTSMVRDLCDRIVE 154

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE--RPKRKTEGIRPWTKEDMQQF-K 183
           +   ++A+Q    +  +++ A  + +   NP   ++           R  T E++  F +
Sbjct: 155 RGGRATAVQAREIISSVYRHANDRGHGLFNPAADIKPSSIAIFKPRERTLTPEEIGLFFR 214

Query: 184 SFWSEGSQ--PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIITVEL 237
           +  + G+    ++A + +L + +R  +   A    +    ++        K      + L
Sbjct: 215 TLDAIGAMGTMKMALKLVLITMVRKGEFTNATWDEIDFKKWTWTIPSDRMKGSRAHVIYL 274

Query: 238 PDGFMKLLAMTP--IGKETFFI---NNDKQKMNATQFSIWFKAKATKAGVNK------SA 286
           P     +L       G   + +    N ++ ++    +            +       + 
Sbjct: 275 PKQAQDILVGLQMCAGGSEYLVPGRYNFRKPLSNAALNSLIDRTVKIINEDGEHIQDFTV 334

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345
           H +R+ ++T+  +AG  +  +      +       Y K A+  R      ++ + ++DS
Sbjct: 335 HDMRRTASTLLHEAGYPSDWIEKALAHEQKGVRAVYNK-AEYARQRAYMLQQWADMIDS 392


>gi|319936315|ref|ZP_08010731.1| phage integrase family Site-specific recombinase [Coprobacillus sp.
           29_1]
 gi|319808430|gb|EFW04982.1| phage integrase family Site-specific recombinase [Coprobacillus sp.
           29_1]
          Length = 398

 Score = 86.2 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 48/339 (14%), Positives = 101/339 (29%), Gaps = 49/339 (14%)

Query: 23  YYFRK---------GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
           YYFR             ++ R  +  +      Y   +  S    + +    KK  T K 
Sbjct: 14  YYFRANLDYHPVTGKQIQKYRSGFSSKKEAKEEYSKLILTSV---DDLVEEEKKEITFKQ 70

Query: 74  LISE----YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK-- 127
            + E    + KS     +  ++  +      +  +        KIT  H++S        
Sbjct: 71  YVDELFFPWYKS----QVKESTFKNRHQSMCKHFKYFDKTLVNKITPIHVQSWQLKLSKV 126

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           + P+               A+       NP   +   K+    I  WT ++ Q   +   
Sbjct: 127 YGPNYIRNVQGMFSRAMDRAIVLGLAKENPSKIIGNIKKHKVKIEFWTLDEFQNIIALLK 186

Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ-------------- 227
           +         ++   L  +GLR  ++     + +     + S+                 
Sbjct: 187 KDDYYEHYIFISLWLLFMAGLRIGEASALQWKDIDFETGVLSVTKNLYYKSCNDYKFVEP 246

Query: 228 KTGTIITVELPDG--FMKL----LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281
           KT   +   + D     +L     A   I K  F ++ +    N        +  +  A 
Sbjct: 247 KTKASVRQIVLDEDTLEQLQLWKSAQQKIIKTDFLLSYNGTPTNKHSLPRAIEKLSEMAN 306

Query: 282 VNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
           +++   H +R   A++    G     +    G + ++  
Sbjct: 307 IHRIKVHALRHSHASLLISMGENPLIIKDRLGHEDIETT 345


>gi|317152280|ref|YP_004120328.1| integrase family protein [Desulfovibrio aespoeensis Aspo-2]
 gi|316942531|gb|ADU61582.1| integrase family protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 355

 Score = 86.2 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 50/266 (18%), Positives = 89/266 (33%), Gaps = 30/266 (11%)

Query: 96  ESYFDQIIRKSGDFDYRKITTKHIRSGV--ESRKHTPSSAIQFLTSMRVLFKWAVRQE-- 151
                +++R  GD     IT++     +   SR  TP +A   L  +R  F WA+++   
Sbjct: 83  RYAAQRLLRHFGDVPCSTITSRMADDYLLSRSRSSTPVAANADLLLLRATFAWAMKRGQR 142

Query: 152 YVAINPCLSVERPKRKTEGIRPWTKE--DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDS 209
           ++A NP   +E         +  T +   + +  +      QP L    +  +  R  + 
Sbjct: 143 FIADNPFAGLESFPSHLAEKKKRTPDSQALDRIIAAAKPEDQPYLW--VIRETLARSVEV 200

Query: 210 CRAGVQ--HLQNNIFSIKTQKTGTI----ITVELPDGFMKLL-----AMTPIGKETFFIN 258
            R   +  + +     +KT K          V + D   ++L        P  +  F+  
Sbjct: 201 HRLKWKRVNFEERYVELKTFKNKDRKPVLRQVPMTDKLYEVLSELYARRDPEKEWVFWCR 260

Query: 259 NDKQKMNA-------TQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMAT 310
           +   K                 K    KAGV   S H  R   A++  + GA    +   
Sbjct: 261 SYSHKQKRMVVGPYTKGRYSMLKTACEKAGVGYYSFHRFRASGASVMDNNGALISGIQHL 320

Query: 311 YGWKTVDQAETY---TKGADRIRLGI 333
            G       E Y    +  +R  + I
Sbjct: 321 LGHADRRSTEIYLEKLRNVERDAMAI 346


>gi|227326878|ref|ZP_03830902.1| putative integrase [Pectobacterium carotovorum subsp. carotovorum
           WPP14]
          Length = 325

 Score = 86.2 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 39/270 (14%), Positives = 72/270 (26%), Gaps = 25/270 (9%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK-- 127
           +L  L+  +         ++          + +    GD      T        + R   
Sbjct: 49  SLSELVQRWF---DMHGRSLADGEGRLRKLELLCANLGDPIASLFTKADFAEYRKQRLSG 105

Query: 128 -----HTP---SSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKED 178
                  P   S+  +  + +  +F    R   +   NP   + + K     +     +D
Sbjct: 106 KFGRFDKPVKESTINREHSYLSAVFNELKRLGEWQGDNPLDGIRQYKESDSELAFLYHDD 165

Query: 179 MQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
           ++   +     S P L       L +G R S++       L     +    K     TV 
Sbjct: 166 IRLILNECDASSNPDLGSVVRICLATGARWSEAQELKQSQLVPYRVTYINTKGKRNRTVP 225

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATI 296
           +     +LL   P  +   F            F    K         +  H +R   A+ 
Sbjct: 226 ISPELYQLL---PRRRGQLF------SPCYDAFRQALKRSQIDLPEGQLTHVLRHTFASH 276

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326
               G     L    G  ++     Y   A
Sbjct: 277 FMMNGGNILVLKDILGHTSIQMTMRYAHFA 306


>gi|256375754|ref|YP_003099414.1| integrase family protein [Actinosynnema mirum DSM 43827]
 gi|255920057|gb|ACU35568.1| integrase family protein [Actinosynnema mirum DSM 43827]
          Length = 325

 Score = 86.2 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 49/321 (15%), Positives = 99/321 (30%), Gaps = 41/321 (12%)

Query: 59  EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS------------ 106
                PR         + ++ +S    +    +R +++    Q+                
Sbjct: 2   PPERLPRPTAAQWSTWLDDWDRSLRAKNHPRTTRYNYQLAVTQLADYLLHELALDFDTRP 61

Query: 107 -----GDFDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCL 159
                   D   +   H+ + V     T   +SA     +++  F +   +E +  +P  
Sbjct: 62  PNTAEAAKDPIAVRRPHVEAFVIWMTDTRSAASAKSKFKALQQFFNYIAEEEELDHHPMA 121

Query: 160 SVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQ 215
            + +PK   +  R    E +  F +          +          +G R ++   AG+ 
Sbjct: 122 KMRQPKVDEKQRRVIPDEQIAAFLAALEGKDYRSRRDFALVRLYFETGGRLAEVVNAGLG 181

Query: 216 HLQN--NIFSIK-----------TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ 262
            L    ++  ++             KTG  +T  L     + LA           N  K 
Sbjct: 182 DLDLKLDVLHVRGKGGKHRSLPFAAKTGQAVTRYL-RARERHLAGRESAALWLPENLPKG 240

Query: 263 ---KMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
               +  +     F+ +A   G    AH  R   +      G +  +LM   GW T    
Sbjct: 241 APTPLTVSAVKSMFRRRADAVGPRIHAHLFRHTFSHNWLRNGGSETDLMRLMGWSTRAML 300

Query: 320 ETYTKGADRIRLGIKNSRRIS 340
           + Y   A   R  I+  ++++
Sbjct: 301 QVYGASAADER-AIQAHQKMA 320


>gi|15837233|ref|NP_297921.1| phage-related integrase [Xylella fastidiosa 9a5c]
 gi|9105505|gb|AAF83441.1|AE003908_9 phage-related integrase [Xylella fastidiosa 9a5c]
          Length = 413

 Score = 86.2 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 61/350 (17%), Positives = 112/350 (32%), Gaps = 48/350 (13%)

Query: 15  RTRHGKIIYYFR---KGHGRRIRLPYPHE-------STFIPAYMSALTGSTPKREYINSP 64
            T  GKI Y  +    G   RI +  PH              ++ ++      R      
Sbjct: 34  VTPTGKITYIVQGRVNGSSPRISI-GPHGVFTVDQARDVAREHLRSMRMGIDPRAVAKKE 92

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
             +  TL+ +   Y++      L  +S+   E +             R IT + +     
Sbjct: 93  AAQRVTLRDVADGYKRD---RPLKDSSKAEIERHVTTTFEAWLKKPLRDITREMVTKRFN 149

Query: 125 SRKHT--------PSSAIQFLTSMRVLFKWAVRQ-------EYVAINPCLSVERPKRKTE 169
             K+         P+ A Q    +R LF +A+R+         +  NP   + +     +
Sbjct: 150 EIKNHGLRGNGPAPAQANQAFAVLRALFNYAIREYREPDGSPVIRDNPVDVLYKKWVPLK 209

Query: 170 GIRPWTKE----DMQQFKSFWSEGSQPRL------AFEFLLYSGLRCSDSCRAGVQ--HL 217
                  +    ++  F     + +  R          F++ +GLR  ++        +L
Sbjct: 210 PRTSRVPDNKVGEVWSFLVEARKNAYNRDTWASIDVIMFMMLTGLRIGEASALTWDRVNL 269

Query: 218 QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI--GKETFFINNDKQKMNATQFSIWFKA 275
           +   F +   K    + + L    ++LL   P   G    F +  K          W K 
Sbjct: 270 EEEWFHLPDPKNSNPVWIPLSSQALELLKTRPRVKGNPHVFPSWGKSGHIKDPRDFW-KK 328

Query: 276 KATKAGVNKSAHGVRKFSATISADAGATAHE--LMATYGWKTVD-QAETY 322
            +  AGV+ S H +R+   T    A     +  +      KT D   + Y
Sbjct: 329 VSEIAGVHLSNHAMRRTF-TQIGTAQCVIEKFRIDLLTNHKTKDVTVKHY 377


>gi|116618784|ref|YP_819155.1| integrase [Leuconostoc mesenteroides subsp. mesenteroides ATCC
           8293]
 gi|116097631|gb|ABJ62782.1| Integrase [Leuconostoc mesenteroides subsp. mesenteroides ATCC
           8293]
          Length = 348

 Score = 86.2 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 40/280 (14%), Positives = 89/280 (31%), Gaps = 30/280 (10%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKH 128
           +   I  Y+       ++ ++ + +E     +     +    ++T    +  +      H
Sbjct: 65  ISDWIDTYK-----TDVSRSTHVGYEMTLKAVSEYFENTSLDQVTRHDAQKFLNEYGLSH 119

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP--KRKTEGIRPWTKEDMQQFKSFW 186
           + +++ +    +  + K AV    + +NP    +      K   ++     D ++F  + 
Sbjct: 120 SLATSQKVKGHLSGILKDAVADGIIKVNPFERAKPHGTNAKDNSLKFLEYADFKRFIEYL 179

Query: 187 SEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-----------KTGTII- 233
            E  +P          SG R  +        + N   +I              KT + I 
Sbjct: 180 KENHEPTHDIMLVASLSGARLGEVLALTPNDIGNRTINISKSYEERLNIVKEPKTPSSIR 239

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRK 291
           TV++P      L            +  +  +N        +   T+  + K  + HG+R 
Sbjct: 240 TVDVPGWLTDYLLTLSKDNNERLFDRQQSSVNRE-----LQRILTRLDIPKRITFHGLRH 294

Query: 292 FSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIR 330
             A++    G     +    G K +   + TY       R
Sbjct: 295 SHASMLISQGVAVEYISERLGHKDISITQKTYLHLLQVKR 334


>gi|325297480|ref|YP_004257397.1| integrase family protein [Bacteroides salanitronis DSM 18170]
 gi|324317033|gb|ADY34924.1| integrase family protein [Bacteroides salanitronis DSM 18170]
          Length = 416

 Score = 86.2 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 41/257 (15%), Positives = 81/257 (31%), Gaps = 27/257 (10%)

Query: 93  ISFESYFDQIIRKSG--DFDYRKITTK---HIRSGVESRKH-TPSSAIQFLTSMRVLFKW 146
             ++ Y    +  +G  D D+  IT +     ++ ++  K+ +     + L  +  L   
Sbjct: 132 KYYQKYLKDYLTSTGKEDIDFTDITEEFGSSYKAFMKRNKNFSAQQINKCLCWLSKLVYL 191

Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS---FWSEGSQPRLAFEFLLYSG 203
           AV  E +  NP   +E  K+     R  ++ +++               R AF F  ++G
Sbjct: 192 AVDYEILRANPLEDMEYEKKPAPKHRHISRAELKAILETPMLDPLQELGRRAFLFSTFTG 251

Query: 204 LRCSDSCRAGVQHLQ-----NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFIN 258
           L   D       H+           I  +KT     + L     ++L       + +   
Sbjct: 252 LAYVDIMLLHPHHIGTTADGRRYIRINRKKTNVEAFIPLHPIAEQIL-------DLYNTT 304

Query: 259 NDKQK----MNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYG 312
           +D +      +  +            G   N S H  R    T     G     +    G
Sbjct: 305 DDTKPVFPLPSRDEMWFEIHELGVAIGRKENLSYHQSRHSFGTFLISEGIPIESIAKMMG 364

Query: 313 WKTVDQAETYTKGADRI 329
              +   + Y +  D+ 
Sbjct: 365 HSGIRTTQRYAEVTDKK 381


>gi|317055533|ref|YP_004104000.1| integrase family protein [Ruminococcus albus 7]
 gi|319788838|ref|YP_004090153.1| integrase family protein [Ruminococcus albus 7]
 gi|315447802|gb|ADU21366.1| integrase family protein [Ruminococcus albus 7]
 gi|315450705|gb|ADU24267.1| integrase family protein [Ruminococcus albus 7]
          Length = 410

 Score = 86.2 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 54/305 (17%), Positives = 95/305 (31%), Gaps = 31/305 (10%)

Query: 48  MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG 107
           +  L G  PKR+Y    R  P T   +I +Y         +  +  +             
Sbjct: 91  LDILNGKEPKRKYTTHKRDCPITYLNVIRKYETFMRNDQKSDGTVRTRSGRITVFFAFLE 150

Query: 108 DF---DYRKITTKHIRSGVESRKHTPSS--AIQFLTSMRVLFKWAVRQEYVAINPC---L 159
           +        IT +     V S     SS      L ++R  F +      ++ +P     
Sbjct: 151 ECKCTSLEGITPELFARFVSSLNDRYSSQGKASILYTLRNFFSYDEFSGALSFDPIPFLT 210

Query: 160 SVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ----PRLAFEFLLYSGLRCSDSCRAGVQ 215
            +   K +      +T E++++  +     +       L        G R SD     + 
Sbjct: 211 GIHSGKHE-RLPSFYTAEEVRRILNAVDRNTPWGKTVYLMMLLASVYGFRSSDIKAMVLD 269

Query: 216 HL--QNNIFSIKTQKTGTIITVELPDG-FMKLLA-----MTPIGKETFFINNDKQKMNAT 267
           ++  +N   +I   KT   I++ + D     LL               FI    +   A 
Sbjct: 270 NINWKNRTINITQYKTHKEISLPMTDEILFALLDYIKNVRPESDCSNVFIRLR-KPYIAY 328

Query: 268 QFSIWFKAKA----TKAGVN-----KSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
             +  F  K       AGV+        H +R   AT    +G   +E+    G  +   
Sbjct: 329 SMNDHFGDKILPFFEIAGVDTKGKHHGLHSLRHSLATNLLVSGTPINEIAVILGHTSAAS 388

Query: 319 AETYT 323
            +TY 
Sbjct: 389 TKTYV 393


>gi|300214143|gb|ADJ78559.1| Phage integrase [Lactobacillus salivarius CECT 5713]
          Length = 381

 Score = 86.2 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 50/282 (17%), Positives = 96/282 (34%), Gaps = 51/282 (18%)

Query: 101 QIIRKSGDFDYRKITTKHIRSGVESRKHTP-SSAIQFLTSMRVLFKWAVRQEYVAINPCL 159
           +I+   G+    +ITT   +  +      P  +       +  +FK+A + + V  +P  
Sbjct: 98  KILPILGNKKINQITTIECQDLINYWYSIPLKNYKAIFNLITRIFKYAKQLKIVTDDPTS 157

Query: 160 SVERPKRKT------EGIRPWTKEDMQQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCR 211
           SV  PK              +T+++++ F  +  +  + +  + F  L +SG+R S++  
Sbjct: 158 SVIIPKASRQFNNLEHSRNYYTRDELKTFLEYAEKHEKHKIYVLFRLLAFSGMRKSEALA 217

Query: 212 AGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN------------ 259
                +      I   KT     + L          T     T FI+             
Sbjct: 218 LTWNDIDFEKAQITINKT-----IILVSKVKVTTPKTKSSNRTVFIDKKTVSILREWRLS 272

Query: 260 DKQKMNATQF-----------------------SIWFKAKATKAGVNK-SAHGVRKFSAT 295
            K+++    F                       S      +  + ++  + HG+R   AT
Sbjct: 273 QKKELLQKGFNALSPNQLVFPDKNNHYIIPTTISKMMNRVSEGSNLHHITVHGLRHTYAT 332

Query: 296 ISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNS 336
           ++A  G +  +L A  G   V+   + YT   D  R    N 
Sbjct: 333 LAAQGGMSVKQLQAQLGHSKVEITLDVYTSITDEQRKDTANQ 374


>gi|255020438|ref|ZP_05292504.1| site-specific recombinase, phage integrase family
           [Acidithiobacillus caldus ATCC 51756]
 gi|254970151|gb|EET27647.1| site-specific recombinase, phage integrase family
           [Acidithiobacillus caldus ATCC 51756]
          Length = 390

 Score = 86.2 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 45/322 (13%), Positives = 90/322 (27%), Gaps = 23/322 (7%)

Query: 44  IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII 103
             A + A   +    +       +  TLK     Y +     S A  +     S      
Sbjct: 36  WAAQVEARLETQTPAQVYKKVEVRELTLKAAFERYTREI-LPSKAPRTSRREHSLIQWWS 94

Query: 104 RKS----GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWA-VRQEYVA-INP 157
           R         +            +E    + ++    L  +  L+  A     YV  INP
Sbjct: 95  RSLWQAVPLPNLDGPQVAQAIRAMEKENRSANTIRLMLAVLSHLYTIARKEWGYVDLINP 154

Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEF-LLYSGLRCSDSCRAGVQH 216
              V +P+      R +   +  +     +  +          L + +R  +        
Sbjct: 155 VELVRKPRLPEGRDRRFVGNEEDRLLEACARKNPELADLVIVALETAMRQGEVFTLTWDR 214

Query: 217 LQ--NNIFSIKTQ--KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM----NATQ 268
           +   ++   +  +  KT    TV L +     L            N    ++        
Sbjct: 215 ISFTDHTIKLPPELTKTRKGRTVPLSERAEDALKRQRARH-----NGHGNRVWSYATQDG 269

Query: 269 FSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
               F      AG+ +   H +R  + +   + G  A  +    G KT      YT  + 
Sbjct: 270 VRASFFKAVKVAGLEDFHFHDLRHEATSRFFERGLNAAVVQGITGHKTAQMLARYTHLSG 329

Query: 328 RIRL-GIKNSRRISSVVDSDDP 348
           +  +  ++ +     V  +  P
Sbjct: 330 KSLVEAVRGADPAIGVSTTPKP 351


>gi|168185301|ref|ZP_02619965.1| tyrosine recombinase [Clostridium botulinum Bf]
 gi|182671650|gb|EDT83611.1| tyrosine recombinase [Clostridium botulinum Bf]
          Length = 278

 Score = 86.2 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 41/213 (19%), Positives = 85/213 (39%), Gaps = 21/213 (9%)

Query: 103 IRKSGDFDYRKITTKHIRSGV----ESRKHTPSSAIQFLTSMRVLFKWAV-RQEYVAINP 157
           I+   D D + I+   + + V      R +   +  + + +++  F++   + + +  NP
Sbjct: 67  IKDISDEDIKNISLTDLFAFVSFVENYRNNGSYAKARKVATLKSFFRFLQGKVKIIKENP 126

Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQ 215
            L +E PK         T ++ ++  S      + R        L  GLR S+ C   + 
Sbjct: 127 ALELESPKISKRNPVYLTLDESKRLLSSIDGKFKERDLCIVTMFLNCGLRLSELCGINIS 186

Query: 216 HLQNNIFSIKTQKTGTIITVELPDG----------FMKLLAMTPIGKETFFINNDKQKMN 265
           +++N+I ++   K     TV L               K +    + K+  F++ +  ++N
Sbjct: 187 NIKNDILTV-VGKGNKERTVYLNKACIKTLNDYLSVRKEIGEKIVDKDALFLSKNYTRIN 245

Query: 266 ATQFSIWFKAKATKAGVNK---SAHGVRKFSAT 295
                +  K    KAG++    S H +R  +AT
Sbjct: 246 KRSVEMLVKKYVKKAGLDGEKYSPHKLRHTAAT 278


>gi|90961218|ref|YP_535134.1| Phage integrase [Lactobacillus salivarius UCC118]
 gi|90820412|gb|ABD99051.1| Phage integrase [Lactobacillus salivarius UCC118]
          Length = 381

 Score = 86.2 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 50/282 (17%), Positives = 96/282 (34%), Gaps = 51/282 (18%)

Query: 101 QIIRKSGDFDYRKITTKHIRSGVESRKHTP-SSAIQFLTSMRVLFKWAVRQEYVAINPCL 159
           +I+   G+    +ITT   +  +      P  +       +  +FK+A + + V  +P  
Sbjct: 98  KILPILGNKKINQITTIECQDLINYWYSIPLKNYKAIFNLITRIFKYAKQLKIVTDDPTS 157

Query: 160 SVERPKRKT------EGIRPWTKEDMQQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCR 211
           SV  PK              +T+++++ F  +  +  + +  + F  L +SG+R S++  
Sbjct: 158 SVIIPKASRQFNNLEHSRNYYTRDELKTFLEYAEKHEKHKIYVLFRLLAFSGMRKSEALA 217

Query: 212 AGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN------------ 259
                +      I   KT     + L          T     T FI+             
Sbjct: 218 LTWNDIDFEKAQITINKT-----IILVSKVKVTTPKTKSSNRTVFIDKKTVSILREWRLS 272

Query: 260 DKQKMNATQF-----------------------SIWFKAKATKAGVNK-SAHGVRKFSAT 295
            K+++    F                       S      +  + ++  + HG+R   AT
Sbjct: 273 QKKELLQKGFNALSPNQLVFPDKNNHYIIPTTISKMMNRVSEGSNLHHITVHGLRHTYAT 332

Query: 296 ISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNS 336
           ++A  G +  +L A  G   V+   + YT   D  R    N 
Sbjct: 333 LAAQGGMSVKQLQAQLGHSKVEITLDVYTSITDEQRKDTANQ 374


>gi|293568753|ref|ZP_06680067.1| phage integrase family protein [Enterococcus faecium E1071]
 gi|291588470|gb|EFF20304.1| phage integrase family protein [Enterococcus faecium E1071]
          Length = 400

 Score = 86.2 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 39/274 (14%), Positives = 89/274 (32%), Gaps = 38/274 (13%)

Query: 109 FDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168
           F+  +  +++ R  V     + S   +    ++++   AV++  +A NP   V       
Sbjct: 126 FELSQTESRNSRKKVNGETLSKSYINRIRGHLKIVLDRAVKEGVIAKNPVDDVSSLPSDN 185

Query: 169 EGIRPWTKEDMQQFKSFWSEG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ------ 218
           + +  W   +  +  +   +        ++ +E L Y+G+R  +       ++       
Sbjct: 186 KKVEFWEHSEFLKVMNELKDDKIQTHHRKIVYEMLFYTGIRIGELEALSWSNVDFEKNTI 245

Query: 219 -----------NNIF--------SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN 259
                      ++ +        + +T   G  ++++L   +        IG   +    
Sbjct: 246 TIEKTLIYNTKDDWYFSTPKTKCAYRTIGMGKKLSLKLRQWY---DLQKRIGNFEYVAQL 302

Query: 260 DKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           D        F+ W K  A KAGV     H +R        +       +    G   +  
Sbjct: 303 DGTFTPPYSFANWLKEAAKKAGVKPIKLHALRHSHVAFLIEQNIQPLSIQERLGHANIQI 362

Query: 319 A-----ETYTKGADRIRLGIKNSRRISSVVDSDD 347
                   Y K   ++   I N +  + +  +DD
Sbjct: 363 TLGTYGHLYAKSDQQVVNAIDNVQEGAILSKNDD 396


>gi|311234339|gb|ADP87193.1| integrase family protein [Desulfovibrio vulgaris RCH1]
          Length = 359

 Score = 86.2 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 45/309 (14%), Positives = 94/309 (30%), Gaps = 25/309 (8%)

Query: 48  MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG 107
             A               +   T+    + Y +   W +   + +     Y   I    G
Sbjct: 54  QLASALRADAVRLSKQVVRANMTVGDAWTLYCR--DWLASKSSYKTDRSLYLKHIEPVIG 111

Query: 108 DFDYRKITTKHIRSGVESRKH-TPSSAIQFLTSMRVLFK----WAVRQEYVAINPCLSVE 162
                ++ T  I   +      +P + +  +  ++ L++    W V        P   V 
Sbjct: 112 SRRMDEVKTVDINELLRRMGDLSPQTRVHAVGLVKRLYRRMAGWGVYHG---PTPTDGVV 168

Query: 163 RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL-AFEFLLYSGLRCSDSCRAGVQH--LQN 219
             +     +R  + ++ +         S          L++GLR  +     VQH  +  
Sbjct: 169 VKRVDNARMRFLSPKEARWLLEELDCRSPQFADVCRVSLFAGLRLREIFSLKVQHVNIDA 228

Query: 220 NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET---FFINNDKQKMNA--TQFSIWFK 274
            + ++   K+G+ +   + +   ++LA   +G+      F     + M      F    +
Sbjct: 229 RVIAVMDAKSGSRMA-SMTEDLARVLARYVVGRRPEEFVFTKASGEGMRTINQTFVRVVR 287

Query: 275 AKATKAGVN-----KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DR 328
                 GV+        H +R   A+     G   + +    G   V+    Y K A D 
Sbjct: 288 DLELNDGVDDARHKVVFHTLRHTFASWLVQRGVPLYTVADLMGHSVVEMTRRYAKLAPDT 347

Query: 329 IRLGIKNSR 337
            R  +    
Sbjct: 348 RREAVNQLD 356


>gi|217978247|ref|YP_002362394.1| integrase family protein [Methylocella silvestris BL2]
 gi|217503623|gb|ACK51032.1| integrase family protein [Methylocella silvestris BL2]
          Length = 400

 Score = 86.2 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 38/243 (15%), Positives = 74/243 (30%), Gaps = 20/243 (8%)

Query: 88  AVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKHT-PSSAIQFLTSMRVLFK 145
              S    +    + I+ +       +IT   IR  +E+     P  A +    +  L  
Sbjct: 122 RPQSAKEMKRILKREILSRWSGRRLTEITRSDIRDLLEAIADRAPIMANRVFEVISSLIN 181

Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF-----KSFWSEGSQPRLAFEFLL 200
           W++  E ++ +P   + +P       R  +++++        ++ W  GS      + L+
Sbjct: 182 WSISMEMLSASPIAGLRKPSPAKRRDRILSEKELTDVWQASERAGWPYGS----MIKVLI 237

Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIITVELPDGFMKLLAMTPI----GK 252
            SG R S+        +     S        K G    + L    + +L   P       
Sbjct: 238 LSGQRRSEVSDMTWSEIDFEERSWTLPAVRTKNGKGHIIPLSPTIIDVLLTLPRIGSESG 297

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYG 312
             F  N      N  +              N + H +R+  AT  A        +     
Sbjct: 298 FVFTTNGFSPIRNFARRKKALMMSCQSEN-NWTLHDLRRTFATGMARLKVELPVVEKLLN 356

Query: 313 WKT 315
             +
Sbjct: 357 HSS 359


>gi|150010186|ref|YP_001304929.1| integrase [Parabacteroides distasonis ATCC 8503]
 gi|149938610|gb|ABR45307.1| integrase [Parabacteroides distasonis ATCC 8503]
          Length = 310

 Score = 86.2 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 46/287 (16%), Positives = 98/287 (34%), Gaps = 36/287 (12%)

Query: 90  NSRISFESYFDQIIRKSG--DFDYRKITTK---HIRSGVESRKHTPSSAIQFLTSMRVLF 144
           ++  S++          G  +  Y  I        +S + ++    ++   ++  +R ++
Sbjct: 24  STAKSYQDALRSFKCFCGRKEIPYAYINRDTLLRYQSWLLAKGCARNTVSTYMRRIRHIY 83

Query: 145 KWAVRQE------YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS---FWSEGSQPRLA 195
             AV         ++  N    VE  ++K         E ++   +      +  + + A
Sbjct: 84  NLAVEVGEAAYIPHLFKNVFTGVESKRKK-----ALPSESLRLLMTSPVTDPQQKRTQSA 138

Query: 196 FEFL-LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG----FMKLLAMTPI 250
           F  + L+ G+   D      + ++  I S   QK+G++I VE+P        +L A T  
Sbjct: 139 FCLMFLFCGMAFVDLAHLRKEDIKEGILSYYRQKSGSLIQVEIPAEAQGLLNELAADTTE 198

Query: 251 GKETFFINNDKQKMNAT----------QFSIWFKAKATKAGVN--KSAHGVRKFSATISA 298
                F   +  K               F+   K  +   G+    +++ +R   AT   
Sbjct: 199 DSPYLFPFLEGMKTGEDAYKEYNTVLGGFNRRLKTLSESIGIRTRVTSYTIRHSFATTLK 258

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345
           +       +    G K++   + Y K     +L   N     SV + 
Sbjct: 259 EQNVPIEMISELLGHKSIKTTQIYLKSFSLEKLSTVNKLCFESVYNY 305


>gi|238798157|ref|ZP_04641644.1| Integrase [Yersinia mollaretii ATCC 43969]
 gi|238718011|gb|EEQ09840.1| Integrase [Yersinia mollaretii ATCC 43969]
          Length = 226

 Score = 86.2 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 36/215 (16%), Positives = 69/215 (32%), Gaps = 31/215 (14%)

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
           A+   + +  +F+ A+    ++ NP  +   P  K +  R     D   F       SQ 
Sbjct: 7   ALNLRSVLSDVFREAIADGLISSNPVEATRTPSPKVKRERL----DYTAFCKIHEAASQQ 62

Query: 193 R----LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248
           +    L+    L +G R  D  +     + +    +   KTG  I + L     +++  T
Sbjct: 63  QNWVQLSMALALITGQRRDDVRQLKRSDVHDGRLWVIQGKTGNQIAISLSLRL-EIMNAT 121

Query: 249 PIG---------KETFFINNDKQ-------KMNATQFSIWFKAKATKAGV-----NKSAH 287
                       K  + I++  +        +NA   +  F        +       S H
Sbjct: 122 VGDIIEKCLNNSKSEYLISSSNKSSGREPGALNADSLTKAFVKALKATDLVYKISPPSFH 181

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
            +R   A+   +A           G K++     Y
Sbjct: 182 EIR-SLASRLYEAEYGKEFAQKLLGHKSMKMTNVY 215


>gi|116626672|ref|YP_828828.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116229834|gb|ABJ88543.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 371

 Score = 86.2 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 43/304 (14%), Positives = 94/304 (30%), Gaps = 37/304 (12%)

Query: 44  IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII 103
            PA ++AL  S      +   +  P T+      +R    +           +    +  
Sbjct: 3   DPANLAALLQSFFTTRLMAQRKVSPHTIASYRDTFRLLLQFA----------QKRLRKAP 52

Query: 104 RKSGDFDYRKITTKHIRSGVESRKH-TPSSAIQFLTSMRVLFKWAVRQ-----EYVAINP 157
            + G  D            +E+R+H    S    LT++R  F++A  +       +    
Sbjct: 53  SQLGLDDLDASLVGAFLEDLENRRHNGARSRNLRLTAIRSFFRYASLEAPAHSGIIQRVL 112

Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAG 213
            +  +R +R   G    T+ +++   +  +     G +        + +GLR S+     
Sbjct: 113 AIPNQRQRRALVGF--LTRPEIEALLAAPNRTQWLGRRDHAFLLTAVQTGLRLSEMTGLR 170

Query: 214 VQHLQNNIF-SIKTQKTG-----TIITVELPDGFMKLLAMTPIGKE-TFFINNDKQKMNA 266
            + +       ++ +  G     T +           +     G   T F +     ++A
Sbjct: 171 QEDVSLGAGAHVRCRGKGRKERCTPLAKPTAAVLKAWIREQGRGDSKTLFPSTRGGPLSA 230

Query: 267 TQFSIWFKAKATKAGVNK--------SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
                       +A  +         S H +R  +A      G     +    G ++V+ 
Sbjct: 231 DGVQHLLARHVAQARKHCASLRKKRVSPHVLRHAAAMELLQGGVDRAVIALWLGHESVET 290

Query: 319 AETY 322
            + Y
Sbjct: 291 TQIY 294


>gi|323945396|gb|EGB41450.1| phage integrase [Escherichia coli H120]
          Length = 387

 Score = 86.2 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 84/220 (38%), Gaps = 24/220 (10%)

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +  + ++    L+ ++ L + A  +E+  ++    ++ P+ K + IR     + Q+    
Sbjct: 139 KPASVATKATHLSFIKALLR-AAEREWKMLDKAPIIKVPQPKNKRIRWLEPHEAQRLIDE 197

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGF 241
             E  +     EF L +GLR S+      Q +         + +  K+   I V L D  
Sbjct: 198 CPEPLKS--VVEFALATGLRRSNIINLEWQQIDMQRRVAWINPEESKSNRAIGVALNDTA 255

Query: 242 MKLLAMTPIGKETFFINNDK--------------QKMNATQFSIWFKAKATKAGVNK-SA 286
            ++L    IG    ++   K              +KM     + W KA   +AG++    
Sbjct: 256 CRVLKKQ-IGNHHRWVFVYKESCTKPDGTKAPTVRKMRYDANTAW-KAALRRAGIDDFRF 313

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           H +R   A+    AG     L    GW++++    Y   A
Sbjct: 314 HDLRHTWASWLVQAGVPLSVLQEMGGWESIEMVRRYAHLA 353


>gi|307290557|ref|ZP_07570469.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX0411]
 gi|306498412|gb|EFM67917.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX0411]
 gi|315030231|gb|EFT42163.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX4000]
 gi|315144768|gb|EFT88784.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX2141]
          Length = 393

 Score = 86.2 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 44/309 (14%), Positives = 97/309 (31%), Gaps = 40/309 (12%)

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKH 118
           Y    +    T + L +E+       S+  ++      Y + Q++   G      I+  +
Sbjct: 71  YGVKKKAPDMTFEDLYNEWITHQR-TSVKASTIAISVRYANNQVLPAFGKLKLSNISVPY 129

Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS--VERPKRKTEGIRPWTK 176
            +  V+       S          + ++ V  +Y+  NP     + R K   +  + ++K
Sbjct: 130 CQKVVDEWHSKYESYDYMRKQTAQILRYGVAMQYIDNNPMEKTLLPRKKEYEKNRKFYSK 189

Query: 177 EDMQQFKSFWSE--GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--------------- 219
           E++      + +    +    F  L Y+G+R S+      + +                 
Sbjct: 190 EELNNLLDAFKDFGNMKQYAFFRLLAYTGMRKSEVLALQWKDIDTFNKELHVNKTLAVDE 249

Query: 220 -NIFSIKTQKTGTIITVELPD----------------GFMKLLAMTPIGKETFFINNDKQ 262
                I++ KT     V   D                 ++KL   T   ++  F      
Sbjct: 250 FGKVIIQSPKTRASRRVISLDTETLSILNNWKLQQKEEYLKLGYNTSSKEQHVFTTVKNT 309

Query: 263 KMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-E 320
                  + W +    K  + + + HG R   A++  +AG +   +    G +      +
Sbjct: 310 LYIPNTVNDWLRYILKKYNLPRITPHGFRHTHASLLLEAGESVKVVQQRLGHENSKVTLD 369

Query: 321 TYTKGADRI 329
            Y    +  
Sbjct: 370 IYAHITNNA 378


>gi|303246077|ref|ZP_07332358.1| integrase family protein [Desulfovibrio fructosovorans JJ]
 gi|302492473|gb|EFL52344.1| integrase family protein [Desulfovibrio fructosovorans JJ]
          Length = 339

 Score = 86.2 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 47/314 (14%), Positives = 97/314 (30%), Gaps = 17/314 (5%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL--KWLIS 76
           G     +R       R  Y  +      Y +                 K  TL    L  
Sbjct: 9   GNWYVQYRVPGLVSPRKEYFGKGEAGMNYAAKRADEIKSGHVFTIASLKGKTLYLDELAQ 68

Query: 77  EYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHT-PSSAI 134
            Y           + R S  S  +   +         +++ + +            ++  
Sbjct: 69  VYLDFLKSQGKNESWRKSIASLVNNHFLPVLSYCPVDQLSFQDVMLVANRFSLKSIATRN 128

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
           ++L  +R +  + + Q     NP  + ++ +      +  T +D+Q+           + 
Sbjct: 129 RYLECLRTILNFGINQGLTTNNPMRTWKKAREPKREFK-LTFDDLQRILDKAQP--HLKW 185

Query: 195 AFEFLLYSGLRCS--DSCRAGVQHLQ--NNIFSIKTQKTG-TIITVELPDGFM-KLLAMT 248
           A E L   G R    +  R   + +    ++  I+  KT  +   + L + F  +LL   
Sbjct: 186 ALEVLWELGTRPGNSELFRIKWEDIDYDGDVIRIRGTKTQTSDRLIPLTEYFKTRLLERQ 245

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHE 306
              +  + I  +  K+   + S  F++   +AG+      + VR   A+     GA    
Sbjct: 246 NQAQSEYVIEYNGHKVTNVKRS--FRSALKEAGISYPVRLYDVRHLFASTMLANGADLKA 303

Query: 307 LMATYGWKTVDQAE 320
           +    G  T     
Sbjct: 304 VSKLLGHSTTRMTA 317


>gi|300214620|gb|ADJ79036.1| DNA integration/recombination/inversion protein [Lactobacillus
           salivarius CECT 5713]
          Length = 305

 Score = 86.2 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 40/284 (14%), Positives = 93/284 (32%), Gaps = 31/284 (10%)

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
           R+K         ++      G+++  +   +      + + + D +  +IT    +  + 
Sbjct: 2   RRKRILFYNYFEDWINIYKVGAVSERTIDKYWLAHRHLKKLAPDLELGQITRIEYQKIIN 61

Query: 125 SRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLS--VERPKRKTEGIRPWTKEDMQ 180
               T   ++ + F   ++     A     +  +P     V+  K   +  +  ++ +++
Sbjct: 62  EFAETHEKATTMDFHHQLKSSILDAFDDGLIDRDPTRKTVVKGKKPGKKKQKYLSEFELK 121

Query: 181 QFKSFWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSIKTQKT--------- 229
                   G++P L +  LL   +GLR  ++     +        I   KT         
Sbjct: 122 MLLRHLHLGTEPNLDWLILLVAKTGLRFGEALGLTKEDFDFENQIINISKTWDYKAARGG 181

Query: 230 -----------GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKAT 278
                         +  +L   F  LL   P G   F     K+++  +  +   K    
Sbjct: 182 FKSTKNKSSIRKVQLDWKLCMQFNTLLRDFPNGTPIFV----KKRVFNSTVNNRLKQYCE 237

Query: 279 KAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
           +  +   S HG+R   A++   AG +   +    G   +   + 
Sbjct: 238 ELAIPIISIHGLRHTHASMLLFAGVSIASVAKRLGHADMTTTQQ 281


>gi|24111756|ref|NP_706266.1| putative phage integrase [Shigella flexneri 2a str. 301]
 gi|30061876|ref|NP_836047.1| putative phage integrase [Shigella flexneri 2a str. 2457T]
 gi|24050540|gb|AAN41973.1| putative phage integrase [Shigella flexneri 2a str. 301]
 gi|30040120|gb|AAP15853.1| putative phage integrase [Shigella flexneri 2a str. 2457T]
          Length = 387

 Score = 86.2 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 84/220 (38%), Gaps = 24/220 (10%)

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +  + ++    L+ ++ L + A  +E+  ++    ++ P+ K + IR     + Q+    
Sbjct: 139 KPASVATKATHLSFIKALLR-AAEREWKMLDKAPIIKVPQPKNKRIRWLEPHEAQRLIDE 197

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGF 241
             E  +     EF L +GLR S+      Q +         + +  K+   I V L D  
Sbjct: 198 CPEPLKS--VVEFALATGLRRSNIINLEWQQIDMQRRVAWINPEESKSNRAIGVALNDTA 255

Query: 242 MKLLAMTPIGKETFFINNDK--------------QKMNATQFSIWFKAKATKAGVNK-SA 286
            ++L    IG    ++   K              +KM     + W KA   +AG++    
Sbjct: 256 CRVLKKQ-IGNHHRWVFVYKESCTKPDGTKAPTVRKMRYDANTAW-KAALRRAGIDDFRF 313

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           H +R   A+    AG     L    GW++++    Y   A
Sbjct: 314 HDLRHTWASWLVQAGVPLSVLQEMGGWESIEMVRRYAHLA 353


>gi|301022356|ref|ZP_07186247.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 196-1]
 gi|299881293|gb|EFI89504.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 196-1]
          Length = 418

 Score = 86.2 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 53/359 (14%), Positives = 123/359 (34%), Gaps = 39/359 (10%)

Query: 22  IYYFRKGHGRRIRLPYPHE----------STFIPAYMSALTGSTPKREYINSPRKKPT-- 69
            Y +R    R   +   +              I A      G +P     +  +K     
Sbjct: 38  RYDYRINGRRETLVIGQYGRDGISLAEAREELIAAKKLLKAGQSPAAAKRDGIKKIRGAE 97

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVES--R 126
           T       Y K      LA ++R   ++  D+ I+   G+    +ITT  +R   +    
Sbjct: 98  TFAVHTDSYMKHVI---LADSTRAMKQAVIDRDILPVLGNKMMAEITTSMVRDLCDRIVE 154

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE--RPKRKTEGIRPWTKEDMQQ-FK 183
           +   ++A+Q   S+  +++ A  + +   NP   ++           R  T E++   F+
Sbjct: 155 RGGRATAVQARESISSVYRHANDRGHGLFNPAADIKPSSIAIFKPRERTLTPEEIGLFFR 214

Query: 184 SFWSEGS--QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIITVEL 237
           +  + G+    ++A + +L + +R  +   A    +    ++        K      + L
Sbjct: 215 TLDAIGAMGTMKMALKLVLITMVRKGEFTNATWDEIDFKKWTWTIPSDRMKGSRAHVIYL 274

Query: 238 PDGFMKLLAMTP--IGKETFFI---NNDKQKMNATQFSIWFKAKATKAGVNK------SA 286
           P     +L       G   + +    N ++ ++    +            +       + 
Sbjct: 275 PKQAQDILVGLQMCAGGSEYLVPGRYNFRKPLSNAALNSLIDRTVKIINEDGEHIQGFTV 334

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345
           H +R+ ++T+  +AG  +  +      +       Y K A+  R      ++ + ++DS
Sbjct: 335 HDMRRTASTLLHEAGYPSDWIEKALAHEQKGVRAVYNK-AEYARQRAYMLQQWADMIDS 392


>gi|307268102|ref|ZP_07549490.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX4248]
 gi|295113806|emb|CBL32443.1| Site-specific recombinase XerD [Enterococcus sp. 7L76]
 gi|306515743|gb|EFM84270.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX4248]
          Length = 378

 Score = 86.2 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 65/376 (17%), Positives = 129/376 (34%), Gaps = 57/376 (15%)

Query: 17  RHGKIIYY---FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
           + G    Y   ++K  G   +L      T   A  +A       ++ +   ++       
Sbjct: 6   KRGNSWQYEISYKKQDGTHSKLRKSGFKTKREAKEAADEIEYNLKKGLQGDKQNI----- 60

Query: 74  LISEYRKSAHWGSL------AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127
           L+SEY K   W +L      +  +   ++   + I R   +    ++T    +  +    
Sbjct: 61  LLSEYFK--DWMNLYKKDVVSEITYRKYKDTLNNIERYMPNIILSQLTRPLYQRYLNKFA 118

Query: 128 --HTPSSAIQFLTSMRVLFKWAVRQEYVAINPC-LSVERPKR--KTEGIRPWTKEDMQQF 182
             H  S+ I+F   +R   K AV +  +  +P   +V + K   KT+  +     D ++ 
Sbjct: 119 EEHMKSTVIKFNNHIRASLKDAVEEGLILFDPTRKAVIKGKESDKTKNDKFLDYGDFKRL 178

Query: 183 KSFWSEGSQPRLAFEFLL----YSGLRCSDSCRAGVQHL--QNNIFSIK---------TQ 227
                +G  P  A   ++     +G+R ++        +  ++ I  I            
Sbjct: 179 MELAEKGIDPHYASPIMVVVAGATGMRFAELLGTTWNDINFEDEIIDIHKTWNYKMNCWG 238

Query: 228 KTGTIITV----------ELPDGFMKLLAMTPIG------KETFFINNDKQKMNATQFSI 271
           KT    ++          +L   + K              +   F N+    ++    + 
Sbjct: 239 KTKNESSIRKIKIDFHTAQLLKEYKKAQKELFDKLEIQNPENFIFYNSQNGLISNNAVTK 298

Query: 272 WFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADR 328
           + + K ++ GV K  + HG+R   A++    G     +    G  ++D    TY      
Sbjct: 299 YLRKKLSEIGVTKKFTLHGLRHTHASVLLYQGCDTIYVSKRLGHSSLDTTITTYLHII-- 356

Query: 329 IRLGIKNSRRISSVVD 344
             L  KN   I SV D
Sbjct: 357 KELDNKNDEMIDSVFD 372


>gi|256751913|ref|ZP_05492784.1| integrase family protein [Thermoanaerobacter ethanolicus CCSD1]
 gi|256749218|gb|EEU62251.1| integrase family protein [Thermoanaerobacter ethanolicus CCSD1]
          Length = 403

 Score = 86.2 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 57/359 (15%), Positives = 120/359 (33%), Gaps = 64/359 (17%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT-TLKWLISEYRKSAHWGS 86
           G+G+R       E          L     + +    P  +   T+K  + ++ ++    S
Sbjct: 27  GNGKRKYYIETIECKNKAEAQKYLAKKIVEYDTGTLPIDETNITVKDYLKKWLETKK-SS 85

Query: 87  LAVNSRISFESYFDQIIR-KSGDFDYRKITT---KHIRSGVESRKHTPSSAIQFLTSMRV 142
           LA+ +   +E      I    G++   K+T    +++ + +  +  +  +     T +  
Sbjct: 86  LALKTYNDYEQKIRLYIDPAIGNYKLLKLTPLIIQNMYNNMLEQGLSARTIRYTHTVLNE 145

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202
             K A++ + +  NPC     PK+  + ++  T E  ++F       ++  + FE LL S
Sbjct: 146 ALKQAIKWQMLRYNPCDGTTLPKQAKKEMKVLTPEQAKKFLEAC-VYNRWGILFELLLIS 204

Query: 203 GLRCSDSCRAGVQHLQ--NNIFSIKTQ-------------KTG-TIITVELPDG----FM 242
           G+R S++     + +   NN  +++               KT  +  T+ LP        
Sbjct: 205 GMRPSEALGLKWEDIDWKNNRIAVQRTLTRVKNNWQLKEPKTPQSRRTIPLPREVMNDLK 264

Query: 243 KLLAMTPIGKE----------------------------------TFFINNDKQKMNATQ 268
           +        K                                     F     + ++   
Sbjct: 265 EHRKQQSEEKLKAKEYINYDKDKNKFKPEKWEEKLKDPKVYVDYGLVFATETGRPLDLAN 324

Query: 269 FS-IWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTK 324
            +  +FK     AG+ N   + +R   AT+   AG     +    G   +    +TY+ 
Sbjct: 325 INYQYFKPLLKNAGLPNIRLYDLRHTCATLLLLAGENPKVVSERLGHANITLTLDTYSH 383


>gi|169794710|ref|YP_001712503.1| putative integrase/recombinase [Acinetobacter baumannii AYE]
 gi|169147637|emb|CAM85500.1| putative integrase/recombinase [Acinetobacter baumannii AYE]
          Length = 355

 Score = 86.2 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 45/213 (21%), Positives = 84/213 (39%), Gaps = 25/213 (11%)

Query: 129 TPSSAIQFLTSMRVLFKWA-VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS--F 185
            PS+ ++  +++   F W    + ++  NP  ++ +PK+     R    E++Q+  +   
Sbjct: 126 KPSTILRDYSTLSSFFNWCRKDKGWIESNPVENLRKPKKPPHRERRTEVEELQRMLAALK 185

Query: 186 WSEGSQP-------RLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVE 236
           +  G+ P        L +   + +G+R  +       H+        +   K GT   V 
Sbjct: 186 YKPGTVPTTKMQEVGLIWLIAMATGMRSGEIVNRLPVHVCLSKRYVQLDKTKNGTARKVP 245

Query: 237 LPDGFMKL----LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGV 289
           L D  ++L    L +   G    F  +D      +     F+    KAG+   + + H  
Sbjct: 246 LDDFALQLWTLALKIDRKGSPKVFTVSD------SSRDSLFRKARKKAGLENSDLTFHDS 299

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETY 322
           R  +A++ A     A  L   +GWK   QA TY
Sbjct: 300 RHEAASLMARRIKNALTLCKIFGWKDPKQALTY 332


>gi|107100187|ref|ZP_01364105.1| hypothetical protein PaerPA_01001210 [Pseudomonas aeruginosa PACS2]
          Length = 328

 Score = 86.2 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 49/314 (15%), Positives = 101/314 (32%), Gaps = 24/314 (7%)

Query: 22  IYYFR----KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISE 77
            ++      KG   R R     E+  I A  +A    +    +   P+ +   L  L+  
Sbjct: 10  RWFVDVEPIKGKRFRKRFKTKMEAQQIEA--NARQKCSENPNWTIKPKDRRR-LSELVEL 66

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI---RSGVESRKHTPSSAI 134
           + +  H  +LA   R    +    I +  GD     +    +   RS   ++  +   A 
Sbjct: 67  WYE-LHGQTLANGKRCV--AILRLIAKDLGDPVAVSLEPAKVACVRSLQVAKGMSGKYAN 123

Query: 135 QFLTSMRVLFKWAVRQEYVA-INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS--- 190
             L  ++ ++    +   +   NP   +   K + + +   TK  + +  +     +   
Sbjct: 124 NRLGYLKSMYNELRQLGTIDYENPVGRMRPLKLQEKPLSYLTKHQVSELLAALDARTTSP 183

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250
            P++     L +G R  ++    +  L+ N       K+  + +V + +G  K +     
Sbjct: 184 HPKMVARICLATGARWGEAQALTLDRLKGNTVIFANTKSKRVRSVPISEGLAKEIR-QHW 242

Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMAT 310
                F N           S   K    +A     +H +R   A+     G     L   
Sbjct: 243 QTHGPFTNCLG-VFRIVLLSTSIKLPRGQA-----SHVLRHTFASHFIMNGGHIVTLQHI 296

Query: 311 YGWKTVDQAETYTK 324
            G  ++     Y  
Sbjct: 297 LGHASLSMTMRYAH 310


>gi|29376747|ref|NP_815901.1| phage integrase family site specific recombinase [Enterococcus
           faecalis V583]
 gi|227517113|ref|ZP_03947162.1| bacteriophage integrase [Enterococcus faecalis TX0104]
 gi|227555267|ref|ZP_03985314.1| bacteriophage integrase [Enterococcus faecalis HH22]
 gi|307285221|ref|ZP_07565367.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0860]
 gi|29344212|gb|AAO81971.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis V583]
 gi|227075427|gb|EEI13390.1| bacteriophage integrase [Enterococcus faecalis TX0104]
 gi|227175589|gb|EEI56561.1| bacteriophage integrase [Enterococcus faecalis HH22]
 gi|306502922|gb|EFM72183.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0860]
 gi|315574659|gb|EFU86850.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0309B]
 gi|315581034|gb|EFU93225.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0309A]
          Length = 382

 Score = 86.2 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 43/290 (14%), Positives = 87/290 (30%), Gaps = 48/290 (16%)

Query: 77  EYRKSAHWGSLAVNS-RISF---ESYFDQIIRKSGDFDYRKITTKHIRSGVE-------- 124
           E+ K   +    + +   ++   +    + +   G     KI   HI+   +        
Sbjct: 70  EFYKKYFFPWYKLGTIEKTYVKTDKTLKRALAYFGKMQMEKIRPIHIQEFQQFLVQECFV 129

Query: 125 ---SRKHTPSSAIQFLTS---MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
                K  P S          +R++FK A+  E +  NP  ++ + + +   +  WT ++
Sbjct: 130 TNKEGKIRPLSNNYIKQIFNKLRIIFKRAMVLEVIDENPVDTIGKIRTQRSVVAFWTVDE 189

Query: 179 MQQ-----FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--------NNIFSIK 225
            ++     ++  + E    R+     + +GLR  +        +         N    I+
Sbjct: 190 FKKVYNCSYRCDFQEAFYKRMMRFLFV-TGLRSEELFALQWPDIDFHKGTCCVNKSLYIR 248

Query: 226 TQ--------KTGTIITVELPD-----GFMKLLAMTPI--GKETFFINNDKQKMNATQFS 270
           T+        K  + I     D        +             F    D    +   F 
Sbjct: 249 TRTDYDFSDTKNASSIRTITLDKQTIVDLREWKETQKTIGDDLGFIFTFDGLPPSPKTFL 308

Query: 271 IWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
              K  A  AGV     HG+R        +     + +    G  +V   
Sbjct: 309 GRVKKLAEIAGVKPIHLHGLRHSHVAFLIEHNNNIYAVSKRLGHSSVKTT 358


>gi|256957153|ref|ZP_05561324.1| integrase [Enterococcus faecalis DS5]
 gi|256947649|gb|EEU64281.1| integrase [Enterococcus faecalis DS5]
          Length = 382

 Score = 86.2 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 67/386 (17%), Positives = 128/386 (33%), Gaps = 64/386 (16%)

Query: 14  ERTRHGKIIYYFRK--GHGRRI-RLPYPHESTFIPAYMS--ALTGSTPKREYINSPRKKP 68
            + ++G+  +YF+   G      +  Y  +  F     +  AL     + +    P    
Sbjct: 5   YKKKNGEKAWYFKTYLGTDPLTGKKKYTTKRGFRTQKEAKIALARLEMEIQKNGIPSSTN 64

Query: 69  TTLK-----WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
            T +     WL   Y+ +    S +  + I F  +   I+   G  +  KI+T + +  V
Sbjct: 65  ITFQEVAFMWL-ENYKNTVKESSYS-RTEIIFRKH---ILPSFGKIEISKISTAYCQKIV 119

Query: 124 ESRKHTPSSAIQ--FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT-----EGIRPWTK 176
            +     SS     F+  M  +FK+A+     + NP ++V  PK +      + I+ +TK
Sbjct: 120 NTWHSKGSSKQYPLFINYMNQVFKFAINIGVTSQNPVINVIVPKNQDIITSEKKIKFYTK 179

Query: 177 EDMQQFKSFWS------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT- 229
           + +Q F              +    F  L +SG R  +        L      ++  KT 
Sbjct: 180 DQLQIFLKSIEQSESTYITIRDYTLFRLLAFSGCRIGELLALTWDDLNIKTGELQINKTI 239

Query: 230 --GTIITVELPDGFMKLLAMTPIGKETF------------------------FINNDKQK 263
                  V       K      +  +T                            N++ +
Sbjct: 240 AKSDHYYVSNTPKTKKSNRTLILDAKTITILKKWKLEQKKYLLKLGYTQPSRIFTNEENE 299

Query: 264 MNATQ----FSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
               Q        ++ K+    +    HG R   A++   AGA   E+    G   +   
Sbjct: 300 FTINQAITDRYNIYRKKSNLPNIG--LHGFRHTHASLLYYAGADHKEVQERLGHANIKTT 357

Query: 320 -ETYTKGADRIRLGIKNSRRISSVVD 344
            +TYT   +  +   K + ++S  + 
Sbjct: 358 LDTYTHLTNDGK--EKTTEKLSKYIG 381


>gi|258541575|ref|YP_003187008.1| phage integrase (truncated middle) [Acetobacter pasteurianus IFO
           3283-01]
 gi|256632653|dbj|BAH98628.1| phage integrase (truncated middle) [Acetobacter pasteurianus IFO
           3283-01]
 gi|256635710|dbj|BAI01679.1| phage integrase (truncated middle) [Acetobacter pasteurianus IFO
           3283-03]
 gi|256638765|dbj|BAI04727.1| phage integrase (truncated middle) [Acetobacter pasteurianus IFO
           3283-07]
 gi|256641819|dbj|BAI07774.1| phage integrase (truncated middle) [Acetobacter pasteurianus IFO
           3283-22]
 gi|256644874|dbj|BAI10822.1| phage integrase (truncated middle) [Acetobacter pasteurianus IFO
           3283-26]
 gi|256647929|dbj|BAI13870.1| phage integrase (truncated middle) [Acetobacter pasteurianus IFO
           3283-32]
 gi|256650982|dbj|BAI16916.1| phage integrase (truncated middle) [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256653973|dbj|BAI19900.1| phage integrase (truncated middle) [Acetobacter pasteurianus IFO
           3283-12]
          Length = 101

 Score = 86.2 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 38/74 (51%)

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202
           +F++A    +   NP   ++  K +      W+++D++ F++FW  GS+ RL     LY+
Sbjct: 1   MFQYAFEHGWRQDNPVKDIKMLKYRKNPFPTWSEKDIRIFENFWPIGSRARLTLALFLYT 60

Query: 203 GLRCSDSCRAGVQH 216
           G R SD  R G   
Sbjct: 61  GQRRSDVIRMGPAR 74


>gi|87162325|ref|YP_494623.1| integrase [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|161510228|ref|YP_001575887.1| bacteriophage integrase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|87128299|gb|ABD22813.1| integrase [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|160369037|gb|ABX30008.1| bacteriophage integrase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|315196780|gb|EFU27125.1| bacteriophage integrase [Staphylococcus aureus subsp. aureus CGS01]
          Length = 345

 Score = 86.2 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 50/325 (15%), Positives = 111/325 (34%), Gaps = 26/325 (8%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT--TLKWLIS 76
           GK   Y  K  G+R R               A +    K   + S        TL+    
Sbjct: 8   GKKWQYEFKYEGKRYRKKGFRTK------REANSAGLDKLNELRSGFNIDNYITLEEYFE 61

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRSGVE--SRKHTPSSA 133
            + K+     +  N+   + +    I + K G  +  KI  +  +  +   S++H   + 
Sbjct: 62  NWIKTYKQPVVKENTYRHYRNALQHIQKHKIGKMELSKINRQVYQKFINDYSKEHAKETI 121

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSV-----ERPKRKTEGIRPWTKEDMQQFKSFWSE 188
            +   ++R     A+    +  NP   V     +  K + E     T+ ++ +      +
Sbjct: 122 RKTNGAIRSALDDALYDGLIFKNPAYKVNYKAGKPTKSEQEKFISVTEYEILK-DHVRKK 180

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTG-TIITVELPDG----F 241
            ++  LA   ++ +G R S +    ++H+    N   I  +KT  +   + +        
Sbjct: 181 RTRSSLALFIMICTGCRVSGARNIKIEHINQVKNTIFIDERKTDTSPRYISIAKSDMKHI 240

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADA 300
           M +++   I  + +        +N    +   K+      ++  ++H +R    +     
Sbjct: 241 MDVISTFAISYDGYIFKEAGSIINLHAINNALKSACRVNNISIITSHALRHTHCSYLLAK 300

Query: 301 GATAHELMATYGWKTVD-QAETYTK 324
           G + H +    G K +      Y+ 
Sbjct: 301 GVSIHYISKRLGHKNIAITTSVYSH 325


>gi|315149854|gb|EFT93870.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX0012]
          Length = 372

 Score = 86.2 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 56/294 (19%), Positives = 108/294 (36%), Gaps = 42/294 (14%)

Query: 70  TLKWLISEYRKSAHWGS-LAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRK 127
           T K +   +   A + + +   +    E  F   I+ + G+    K+T    +  V    
Sbjct: 63  TFKDVYELWY--AQYVNTVKPITAGHTERMFRLHILPEFGNIKINKLTKLMCQKAVNKWS 120

Query: 128 HTPSSAIQFLTSM-RVLFKWAVRQEYVAINPCLSVERPKRK----TEGIRPWTKEDMQQF 182
               SA   L S+ + +  +AV Q+ + INP   V  PK+     T+  +     +++ F
Sbjct: 121 -KEYSAFYLLKSITQKMLHYAVAQDIIDINPMQYVVMPKKNRTNETKKKQFLELSELKDF 179

Query: 183 --KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT----GTIITVE 236
             ++  +   Q  L F  L ++GLR  +      + +  +   +   KT    G   T+ 
Sbjct: 180 LAEARETLNFQDYLIFRVLAFTGLRKGELYALTWEDINISYKQLTVNKTLTRIGKEYTIS 239

Query: 237 LPDGFMKL----LAMTPIGKETFFINNDKQKMNATQF-------SIWFKAK--------- 276
            P          L  T + +   +  N KQ++    F        + F  K         
Sbjct: 240 TPKTKASNRTIGLDDTTVSELIVWKKNQKQELLKYGFKTKSNDKQLIFHRKNNTLHYPEH 299

Query: 277 -----ATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
                +++   + S H  R   A++  ++GAT  ++    G   V+   + YT 
Sbjct: 300 INVLLSSEMKTSLSPHSFRHTHASLLFESGATIKDVQKRLGHTNVNTTMDIYTH 353


>gi|306833437|ref|ZP_07466564.1| phage integrase [Streptococcus bovis ATCC 700338]
 gi|304424207|gb|EFM27346.1| phage integrase [Streptococcus bovis ATCC 700338]
          Length = 354

 Score = 86.2 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 44/273 (16%), Positives = 94/273 (34%), Gaps = 27/273 (9%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHT 129
               I  Y K      L  N+ I+     + +I+   G+    +IT  +IR         
Sbjct: 58  FSNFIDLYFKDCD-ARLKRNTIINKRYIINLKILPYFGNKKMNEITPANIREWQNIMIGK 116

Query: 130 PSSAIQFLTS---MRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQQFKSF 185
             S     T    +  +F  AV+   +  NPC  V    K+K + ++ +TK++ + F + 
Sbjct: 117 GYSQTYLKTINNQITTIFNHAVKLYGLQSNPCHKVGSMGKKKAKEMKFYTKDEFKLFINQ 176

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---------------NNIFSIKTQKTG 230
             +     + F  + ++G+R  +     V  +                     +   KT 
Sbjct: 177 LMDKRLSYVCFMVMYWTGIRVGELLALDVGDVDVKHKTISITKSYQRLEGEDVVTLPKTD 236

Query: 231 TI-ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK--ATKAGVNK-SA 286
                +++PD   + L         +      +    +++ +  K    A +AG+ K   
Sbjct: 237 ASNRVIDIPDFLAEDLK--DYLDYLYMPEPTDRLFTVSKYYLRRKLARGAKQAGIKKIRI 294

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQA 319
           H +R   A +  +       +    G ++++  
Sbjct: 295 HDMRHSHAALLINMDKPILAISRRLGHESIETT 327


>gi|300902550|ref|ZP_07120527.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 84-1]
 gi|301302005|ref|ZP_07208138.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 124-1]
 gi|300405363|gb|EFJ88901.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 84-1]
 gi|300842557|gb|EFK70317.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 124-1]
 gi|315253725|gb|EFU33693.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 85-1]
          Length = 387

 Score = 86.2 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 84/220 (38%), Gaps = 24/220 (10%)

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +  + ++    L+ ++ L + A  +E+  ++    ++ P+ K + IR     + Q+    
Sbjct: 139 KPASVATKATHLSFIKALLR-AAEREWKMLDKAPIIKVPQPKNKRIRWLEPHEAQRLIDE 197

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGF 241
             E  +     EF L +GLR S+      Q +         + +  K+   I V L D  
Sbjct: 198 CPEPLKS--VVEFALATGLRRSNIINLEWQQIDMQRRVAWINPEESKSNRAIGVALNDTA 255

Query: 242 MKLLAMTPIGKETFFINNDK--------------QKMNATQFSIWFKAKATKAGVNK-SA 286
            ++L    IG    ++   K              +KM     + W KA   +AG++    
Sbjct: 256 CRVLKKQ-IGNHHRWVFVYKESCTKPDGTKAPTVRKMRYDANTAW-KAALRRAGIDDFRF 313

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           H +R   A+    AG     L    GW++++    Y   A
Sbjct: 314 HDLRHTWASWLVQAGVPLSVLQEMGGWESIEMVRRYAHLA 353


>gi|189463399|ref|ZP_03012184.1| hypothetical protein BACCOP_04118 [Bacteroides coprocola DSM 17136]
 gi|189429828|gb|EDU98812.1| hypothetical protein BACCOP_04118 [Bacteroides coprocola DSM 17136]
          Length = 385

 Score = 86.2 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 48/252 (19%), Positives = 95/252 (37%), Gaps = 25/252 (9%)

Query: 90  NSRISFESYFDQIIRKSGDFDYRKITTK---HIRSGVESRKHTPSSAIQFLTSMRVLFKW 146
           +++ +  +    +   + +  ++++  K        ++++K   ++  + L  +R +   
Sbjct: 123 STKNNLYTTLTLLESFAHEITFKQMDYKLLLSFEQFMKNKKLGINTIAKHLRHIRTIINE 182

Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRP-WTKEDMQQFKSF---WSEGSQPRL--AFEFLL 200
           AVRQ  +A       E   + TE        E++ + +       + +      AF F  
Sbjct: 183 AVRQGIIAKEDSPFTEYKIKTTESHHTYLLPEELDKLEHINLSRKKNTLRHTLDAFLFCC 242

Query: 201 YSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDGFM----KLLAMTPIGK 252
           Y+GLR SD      Q+L    +      K+QKTGT+  + L   F     ++L   P  +
Sbjct: 243 YTGLRYSDFISMKKQNLIQTDKELWLVFKSQKTGTVTQLPLGYLFQGKAIRILYHYPDIE 302

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMAT 310
           E F I  +         +         AG+ K  S H  R  +AT+    G     +   
Sbjct: 303 EFFHIKPN------ASVNKELIRIGKLAGITKHFSFHTARHTNATLLIYKGVQLSTVQKL 356

Query: 311 YGWKTVDQAETY 322
            G + +   + Y
Sbjct: 357 LGHRNIKTTQVY 368


>gi|153839218|ref|ZP_01991885.1| site-specific recombinase IntIA [Vibrio parahaemolyticus AQ3810]
 gi|308094780|ref|ZP_05892029.2| site-specific recombinase IntIA [Vibrio parahaemolyticus AN-5034]
 gi|308095642|ref|ZP_05907294.2| site-specific recombinase IntIA [Vibrio parahaemolyticus Peru-466]
 gi|308125806|ref|ZP_05777497.2| site-specific recombinase IntIA [Vibrio parahaemolyticus K5030]
 gi|308126623|ref|ZP_05911350.2| site-specific recombinase IntIA [Vibrio parahaemolyticus AQ4037]
 gi|149747246|gb|EDM58234.1| site-specific recombinase IntIA [Vibrio parahaemolyticus AQ3810]
 gi|308086647|gb|EFO36342.1| site-specific recombinase IntIA [Vibrio parahaemolyticus Peru-466]
 gi|308093266|gb|EFO42961.1| site-specific recombinase IntIA [Vibrio parahaemolyticus AN-5034]
 gi|308107453|gb|EFO44993.1| site-specific recombinase IntIA [Vibrio parahaemolyticus AQ4037]
 gi|308111500|gb|EFO49040.1| site-specific recombinase IntIA [Vibrio parahaemolyticus K5030]
          Length = 341

 Score = 86.2 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 68/213 (31%), Gaps = 52/213 (24%)

Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225
            + +     T++++++F        + +L  + L  SGLR  +  R  +Q +  +  +++
Sbjct: 119 TEKKLPVVLTRDEVRRFVQHIDP--RYKLHIQLLYGSGLRIMECLRLRIQDIDYDYGAVR 176

Query: 226 --TQKTGTIITVELPDGFMK------------------------------LLAMTPIGKE 253
               K G   TV L     +                              L    P  + 
Sbjct: 177 VWQGKGGKNRTVTLAKELHEPLKSQMNFARNYYFKDRHVPGYAGVYISEGLRRKYPNAEL 236

Query: 254 TF-----FINN-----------DKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSAT 295
            F     F +N            +  +N +      K  A  A + K+   H +R   AT
Sbjct: 237 DFNWHFLFPSNKLSVDKETGQLRRHHINESAIQRAVKRSALDANIEKTVTCHTLRHSFAT 296

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADR 328
              ++GA    +    G   V   + YT   +R
Sbjct: 297 HLLESGADIRTVQEQLGHTDVKTTQIYTHVIER 329


>gi|89152450|ref|YP_512286.1| putative integrase [Escherichia phage phiV10]
 gi|74055473|gb|AAZ95922.1| putative integrase [Escherichia phage phiV10]
          Length = 416

 Score = 86.2 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 53/359 (14%), Positives = 122/359 (33%), Gaps = 39/359 (10%)

Query: 22  IYYFRKGHGRRIRLPYPHE----------STFIPAYMSALTGSTPKREYINSPRKKPT-- 69
            Y +R    R   +   +              I A      G +P     +  +K     
Sbjct: 38  RYDYRINGRRETLVIGQYGRDGISLAEAREELIAAKKLLKAGQSPAAAKRDGIKKIRGAE 97

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVES--R 126
           T       Y K      LA ++R   ++  D+ I+   G+    +ITT  +R   +    
Sbjct: 98  TFAVHTDSYMKHVI---LAESTRAMKQAVIDRDILPVLGNKMMAEITTSMVRDLCDRIVE 154

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE--RPKRKTEGIRPWTKEDMQQF-K 183
           +   ++A+Q    +  +++ A  + +   NP   ++           R  T E++  F +
Sbjct: 155 RGGRATAVQAREIISSVYRHANDRGHGLFNPAADIKPSSIAIFKPRERTLTPEEIGLFFR 214

Query: 184 SFWSEGSQ--PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIITVEL 237
           +  + G+    ++A + +L + +R  +   A    +    ++        K      + L
Sbjct: 215 TLDAIGAMGTMKMALKLVLITMVRKGEFTNATWDEIDFKKWTWTIPSDRMKGSRAHVIYL 274

Query: 238 PDGFMKLLAMTP--IGKETFFI---NNDKQKMNATQFSIWFKAKATKAGVNK------SA 286
           P     +L       G   + +    N ++ ++    +            +       + 
Sbjct: 275 PKQAQDILVGLQMCAGGSEYLVPGRYNFRKPLSNAALNSLIDRTVKIINEDGEHIQGFTV 334

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345
           H +R+ ++T+  +AG  +  +      +       Y K A+  R      ++ S ++DS
Sbjct: 335 HDMRRTASTLLHEAGYPSDWIEKALAHEQKGVRAVYNK-AEYARQRAYMLQQWSDMIDS 392


>gi|239628066|ref|ZP_04671097.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239518212|gb|EEQ58078.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 293

 Score = 86.2 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 42/286 (14%), Positives = 96/286 (33%), Gaps = 23/286 (8%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
           I+E++        A  +   +     +++    + D  K +    R  + S+ + P +  
Sbjct: 6   INEFQSYLRNEEKAEATISKYLHDVKEMLVFIEEMDLNKESLIEYRKYLSSQ-YKPQTVN 64

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI----RPWTKEDMQQFKSFWSEGS 190
             L+++    K+   ++ +     L V+  K +        R  T++D ++  +      
Sbjct: 65  GKLSAINAFLKF---KDLLE----LKVKFLKVQKRVYVDEKRELTEQDFKRLIAAADRNG 117

Query: 191 QPRLAFEFL--LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE---LPDGFMKLL 245
             +L +  +    +G+R S+     V+ ++     I + K    + +    L     +  
Sbjct: 118 NKQLYYLMMVLYGTGIRISELPFVTVEAIETGRAEI-SMKGKYRVIIFPKNLVRLLKEYT 176

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGA 302
            ++ I +   F     + ++ +      K     A V  S    H  R   A        
Sbjct: 177 KVSNIRQGCIFRTRSGRNLDRSNIYHSMKRLCRDAQVQPSKVFPHNFRHLFAKCFYSIEK 236

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
               L    G  +++    Y   A  I+   K   ++   VD   P
Sbjct: 237 NLSHLADILGHSSIETTRIYV--AASIKQYEKIMDKMRIEVDKQKP 280


>gi|29376554|ref|NP_815708.1| phage integrase family site specific recombinase [Enterococcus
           faecalis V583]
 gi|227555403|ref|ZP_03985450.1| phage integrase family site specific recombinase [Enterococcus
           faecalis HH22]
 gi|29344018|gb|AAO81778.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis V583]
 gi|227175446|gb|EEI56418.1| phage integrase family site specific recombinase [Enterococcus
           faecalis HH22]
 gi|315167585|gb|EFU11602.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX1341]
          Length = 382

 Score = 86.2 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 52/350 (14%), Positives = 119/350 (34%), Gaps = 43/350 (12%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTP-----KREYINS 63
            +V     + G   + +R  +   ++           +  +A           + +  + 
Sbjct: 11  KYVFSYSNKKG-TFWGYRYPYYNSLKHRKEASKRGFESERAANKALLKIQYDLETQNTSF 69

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIR-- 120
              K  T+   I  +   A   + +V+++ + ES     I    G+     +     +  
Sbjct: 70  VENKQLTIDEWIKVWIPYAQ-DNWSVSTKQNIESAVKFHISPLIGNQKLSSLNKITYKRE 128

Query: 121 ---SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
                 +  K+T S+   +   +  +   AV  + +  N     +     +  +R ++K+
Sbjct: 129 FIDKLRQENKYTESTIQTWHKIVMRMINAAVHNQIIPSNTLTGFKF--DLSNNVRSFSKK 186

Query: 178 DMQQFKSFWS-EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ------------NNIFSI 224
           ++Q+F +    E  Q ++ F  LL SG+R  +        +              +    
Sbjct: 187 ELQRFVAVLENEDIQTQVIFLTLLKSGMRKGELMGLRWSDIDLTEKYFDINSTRGDYGEN 246

Query: 225 KTQKTGTIITVELPDGFMKLLAMTP--------------IGKETFFINNDKQKMNATQFS 270
           K +   +I  V   +  + L+                    K+ F +++    +  ++ +
Sbjct: 247 KPKTKTSIRKVYFDNSLLTLIKKYKNHEKERLFREGIILSDKDYFILSSRNLPIKQSRIT 306

Query: 271 IWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
             F+    KA V N + HG+R   AT   +AGA    +    G K ++  
Sbjct: 307 YMFRLLCEKAEVQNITVHGLRHTHATFLIEAGANIKYVSTRLGHKNINIT 356


>gi|307354180|ref|YP_003895231.1| integrase family protein [Methanoplanus petrolearius DSM 11571]
 gi|307157413|gb|ADN36793.1| integrase family protein [Methanoplanus petrolearius DSM 11571]
          Length = 379

 Score = 86.2 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 53/308 (17%), Positives = 105/308 (34%), Gaps = 36/308 (11%)

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNS--RISFESYFDQIIRKSGDFDYRKITTKHIRS 121
           P      +K+L   Y K      L+  +     + +Y    +  +G  D +++T   + +
Sbjct: 9   PSIDEANIKYL-ESYVKHLELKQLSEQTIQTKVWRNY--NFLISNGFKDSKQVTQDDVEN 65

Query: 122 GVESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAI---NPCLSVERPKRKTEGIRPWTK 176
               R+   +  +    +  +++ F+W V +E       N  + ++R +      +  T+
Sbjct: 66  YFIKRRKECSQVTVNGEILEIKLFFRWLVGKETEEALFEN--VKIKRVRSSLPTDQLLTR 123

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL---QNNIFSIKTQKTGTII 233
            D+++  +      + R     L  +G R  +     + H+   +     I   KTG   
Sbjct: 124 YDIEKLVNACDR-QRDRAIIMLLWDTGARIGEIVSLNIGHIEFDRYGAVVIVKGKTGMRR 182

Query: 234 TVELP--DGFMKLLAMTP---IGKETFFIN-----NDKQKMNATQFSIWFKAKATKAGVN 283
              +         + + P         F       N  +++N        K  A +A V+
Sbjct: 183 LRLISSVPDLQAWINVHPLRDRSDAPLFTTFTRYGNGNKRLNHHTIQNMLKRVAQRANVH 242

Query: 284 KS--AHGVRKFSATISADA-----GATAHELMATYGW-KTVDQAETYTK--GADRIRLGI 333
           K    H +R    T          G +  EL    GW K  +  E Y    G D  R  +
Sbjct: 243 KRIHPHAIRHARLTDLVKNEGGKRGLSEMELRVFAGWEKNSNMPEVYVHLSGGDIERKML 302

Query: 334 KNSRRISS 341
           +N+  I  
Sbjct: 303 ENAGLIDE 310


>gi|299536395|ref|ZP_07049707.1| tyrosine recombinase xerC-like protein [Lysinibacillus fusiformis
           ZC1]
 gi|298727879|gb|EFI68442.1| tyrosine recombinase xerC-like protein [Lysinibacillus fusiformis
           ZC1]
          Length = 399

 Score = 86.2 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 50/317 (15%), Positives = 102/317 (32%), Gaps = 45/317 (14%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFE-SYFDQIIRKSGDFDYRKITTKHIRS---GVES 125
           T+   + ++ +        V +    + +  +      G +  +K+     +     +  
Sbjct: 76  TVGQWLDDWLEMNK-NKWKVTTMKQRKLAVKNHFKPLLGHYKLQKLDRITYQRVFIDILE 134

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV---ERPKRKTEGIRPWTKEDMQQF 182
           +K  P +   F +  ++    AV +E +  N    V      +   +     T E++  F
Sbjct: 135 QKFKPGTVNLFHSIFKIAINAAVEEELLIRNRFTKVVIKNEFELTKQTYNYLTIEELNIF 194

Query: 183 KSFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSI---------KTQKT 229
                +             +Y+G+R  + C    Q++   NNI +I         +T KT
Sbjct: 195 LHTAKKYEDITGYTFLLVAVYTGMRKGEICGLQWQNIDFKNNIITIERTRDDIGTRTPKT 254

Query: 230 GT-----IITVELPDGFMK---------LLAMTPIGKETF-FINNDKQKMNATQFSIWFK 274
                  ++   + D   K         L     +  + F FIN     ++       F+
Sbjct: 255 KNSYRRILVDDLVIDQLKKYQVWCKQILLKHGKQLDDQLFVFINTFNNLLHGAAIHKMFR 314

Query: 275 AKATKAGV-------NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
               KAG+         + HG+R   ATI  ++G     +    G       E Y     
Sbjct: 315 DTILKAGILNNDGEPKITFHGLRHTHATILLNSGQNVKAIAQRLGNTPAMIYEIYGHVM- 373

Query: 328 RIRLGIKNSRRISSVVD 344
              L  ++    S  ++
Sbjct: 374 -KELEEQSVEVFSRSLN 389


>gi|325922092|ref|ZP_08183886.1| Integrase [Xanthomonas gardneri ATCC 19865]
 gi|325547429|gb|EGD18489.1| Integrase [Xanthomonas gardneri ATCC 19865]
          Length = 418

 Score = 86.2 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 50/307 (16%), Positives = 100/307 (32%), Gaps = 34/307 (11%)

Query: 50  ALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGD 108
           AL     KR    +       LKWL            +A ++R   +   D+ I+     
Sbjct: 83  ALEKQREKRRLTAAKNFGDVALKWLADA--------KMADSTRAMRKHVVDRDILPVFRS 134

Query: 109 FDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
               +IT   +R+     K    P++A+     ++ ++ +A+       NP   V     
Sbjct: 135 RLLNEITANDLRALCNKVKARGAPATAVHVRDIVKQVYAFAILHGERVDNPANDVAAASI 194

Query: 167 KT--EGIRPWTKEDMQ-QFKSFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221
            T     R  +  +++  F    S  + P  RLA   +L + +R S+   A    +    
Sbjct: 195 ATFVPKDRALSPAEIRLAFHQLESIATYPTIRLALRMVLLTLVRKSELIEATWSEIDFEH 254

Query: 222 FSIK----TQKTGTIITVELPDGFMKLLAMTPI--GKETFFINNDKQK------MNATQF 269
            +        K      V L    + +L           F + +  +           + 
Sbjct: 255 ATWTIPKQRMKGRNPHVVYLSRQALDILVALHTCAAGSKFVLPSRYEPTRCMSHATLNRV 314

Query: 270 SIWFKAKATKAGVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKG 325
           +     +A  AG+     + H +R+  +T+  + G     +      +    +   Y K 
Sbjct: 315 TQLIVERAKAAGLPLERFTVHDLRRTGSTLLNEVGFNGDWIEKCLAHEEGRSSRSIYNKA 374

Query: 326 --ADRIR 330
             A++ R
Sbjct: 375 EYAEQRR 381


>gi|317491548|ref|ZP_07949984.1| phage integrase [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316921095|gb|EFV42418.1| phage integrase [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 387

 Score = 86.2 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 44/258 (17%), Positives = 86/258 (33%), Gaps = 29/258 (11%)

Query: 91  SRISFESYFDQIIRKSGDFDYRKITTKHIRSG--VESRKHTPSSAIQFLT---SMRVLFK 145
           +    ++   ++  +S    + K   + +R G  V   K  P +     +    MR L +
Sbjct: 99  TNDRIQAALSKMENRSHRARWEKQRDRLMRDGKPVPEYKSKPVTQSTIYSHQAFMRSLLR 158

Query: 146 WAV-RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGL 204
            A     ++   P +  + P+     IR  TK++ ++         +  + F     +GL
Sbjct: 159 IAANEWGWLNSVPVVKAKSPR--GRRIRWLTKDEARRLLDELPVHFRSVVMFALA--TGL 214

Query: 205 RCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF----- 255
           R S+        +           +  K G  I V L D    +L         +     
Sbjct: 215 RRSNILNMEWSQIDMQRKMAWIHPEDAKAGRAIGVALNDTACSVLRGQIGKHHRWVFVHE 274

Query: 256 --FINNDK------QKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHE 306
              I  +       +KM       W ++   +AG+ +   H +R   A+    +G     
Sbjct: 275 DSCIRPNGEVAPKLRKMRVDSNKAW-RSALKRAGIEDFRFHDLRHTWASWLVQSGVPISA 333

Query: 307 LMATYGWKTVDQAETYTK 324
           L    GW++V+    Y  
Sbjct: 334 LQEMGGWESVEMVRRYAH 351


>gi|288927178|ref|ZP_06421058.1| phage-related integrase [Prevotella buccae D17]
 gi|315608604|ref|ZP_07883587.1| possible tyrosine recombinase [Prevotella buccae ATCC 33574]
 gi|288336047|gb|EFC74448.1| phage-related integrase [Prevotella buccae D17]
 gi|315249707|gb|EFU29713.1| possible tyrosine recombinase [Prevotella buccae ATCC 33574]
          Length = 342

 Score = 86.2 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 45/301 (14%), Positives = 94/301 (31%), Gaps = 46/301 (15%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFE----SYFDQIIRK----SGDFDYRKITTKHIRSG 122
           L+   +EY  SA    ++ N+  S+     SY D +  K    +       +  K++   
Sbjct: 10  LRGFFTEYL-SAE-RGVSSNTLRSYGTAFASYLDFMRVKREVDAEKLTLEHMGRKNVLDY 67

Query: 123 VE----SRKHTPSSAIQFLTSMRVLFKWAVRQE------YVAINPCLSVERPKRKTEGIR 172
           ++     +  + S+  Q L ++    ++   ++      +  I   L V+  K     + 
Sbjct: 68  LDWLQTDKSSSVSTRNQRLAAIHAFCRYMQYEDVTRLYQWQEI---LGVKMKKAIKGTMN 124

Query: 173 PWTKEDMQQFKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-- 226
             T + +++  +        G +       L  +G R  +        +  +     T  
Sbjct: 125 YLTMDAVKELLAHIPQTTMRGRRDLAMLSLLYETGARVQELIDLRPVDVCLSKPYYVTLF 184

Query: 227 QKTGTIITVELPDGFMKLLAM---------TPIGKETFFINNDKQKMNATQFSIWFKAKA 277
            K      V + D  + +L             + +   F N    K+     +   K  A
Sbjct: 185 GKGNKKRLVPIQDAQVSILRKYMEENHLLELRMNQRPLFQNGRGGKLTGAGITYILKNYA 244

Query: 278 TKAGV--------NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           T A            S H +R   A     AG     +    G  ++   E Y +   + 
Sbjct: 245 TMARTASENLIPEKISPHCLRHSKAMHLLQAGVNLVYIRDILGHVSIQTTEVYARADSKQ 304

Query: 330 R 330
           +
Sbjct: 305 K 305


>gi|269962907|ref|ZP_06177246.1| site-specific recombinase IntI [Vibrio harveyi 1DA3]
 gi|269832352|gb|EEZ86472.1| site-specific recombinase IntI [Vibrio harveyi 1DA3]
          Length = 320

 Score = 86.2 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 39/294 (13%), Positives = 91/294 (30%), Gaps = 57/294 (19%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWA 147
           A  +  ++  +  + I         K++   +   +         A++          + 
Sbjct: 19  AKKTIETYLFWIKRYIVFHQLAHPSKLSEDDVERFLSHLAIDEKVAVKTQALALNAISFL 78

Query: 148 VRQEY---VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGL 204
            R+ +   +++N  +  ++   + +     T++++++F        + +L  + L  SGL
Sbjct: 79  YREYFQMPLSLN--MRFQKSLTEKKLPVVLTRDEVRRFVQHIDP--KYKLHIQLLYGSGL 134

Query: 205 RCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLAMTPIGKETFFINND-- 260
           R  +  R  +Q +  +  +++    K G   TV L     + L         ++  +   
Sbjct: 135 RIMECLRLRIQDIDYDYGALRVWQGKGGKNRTVTLAKELHEPLKAQVSLARDYYQKDRHM 194

Query: 261 --------------------------------------------KQKMNATQFSIWFKAK 276
                                                       +  +N +      K  
Sbjct: 195 GGYAGVYISDGLRRKYPGAELDFNWHFLFPSTKLSVDDDTGEFRRHHINESAIQRAVKRA 254

Query: 277 ATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
              AG+ KS   H +R   AT   ++GA    +    G   V   + YT   +R
Sbjct: 255 TKDAGIEKSVTCHTLRHSFATHLLESGADIRTVQEQLGHTDVKTTQIYTHVIER 308


>gi|109289985|ref|YP_655517.1| integrase [Mannheimia phage phiMHaA1]
 gi|254360826|ref|ZP_04976973.1| bacteriophage integrase [Mannheimia haemolytica PHL213]
 gi|90110591|gb|ABD90601.1| integrase [Mannheimia phage phiMhaA1-PHL101]
 gi|90110642|gb|ABD90651.1| integrase [Mannheimia phage phiMhaA1-BAA410]
 gi|153092300|gb|EDN73369.1| bacteriophage integrase [Mannheimia haemolytica PHL213]
          Length = 332

 Score = 86.2 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 59/321 (18%), Positives = 105/321 (32%), Gaps = 34/321 (10%)

Query: 20  KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYR 79
           K     RK    +             AY  AL       EY  +P         LI +Y 
Sbjct: 10  KYRAQVRKKGIYKTATFSTKTEANRWAY--ALEAQIDAGEYNTTPNIL---FAELIDKYL 64

Query: 80  KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--TPSSAIQFL 137
           K           R              G+     +T +H+R     R     P S  +  
Sbjct: 65  K--EVTPTKRGKREERYRLLRIAGSNLGNIPLPALTKEHLRQWQNQRLQEVQPVSVSRER 122

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ--FKSFWSEGSQPRL- 194
            ++  LF  A+  +Y+  NP  ++E+ K      R ++ E++ +  F S +S    P L 
Sbjct: 123 ATLSALFTKAMEWDYLKENPLKTLEKIKTPPARTRRYSDEEIDKLIFVSGYSPNQPPLLM 182

Query: 195 ------AFEFLLYSGLRCSDSCRAGVQHLQNNIFS--IKTQKTGTIITVELPDGFMKLLA 246
                 A  F + + +R  +      +H+     +  +   K G   TV L    + +L 
Sbjct: 183 QQRAGAALLFAIETAMRAGEIAGLKWEHINLQARTAFLPQTKNGYSRTVPLSTKAIAILN 242

Query: 247 MT----PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISAD 299
                 P  + + F      ++ +      F+    KA +   +   H  R+ + T  + 
Sbjct: 243 QLAQLEPNKQNSVF------QLTSRSLDSNFRKLKQKANLHNADLHFHDTRREALTRLSK 296

Query: 300 AGATAHELMATYGWKTVDQAE 320
              T  EL    G + +   +
Sbjct: 297 Y-LTVMELAKVSGHRDLSILQ 316


>gi|54295400|ref|YP_127815.1| hypothetical protein lpl2486 [Legionella pneumophila str. Lens]
 gi|53755232|emb|CAH16726.1| hypothetical protein lpl2486 [Legionella pneumophila str. Lens]
          Length = 413

 Score = 86.2 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 55/293 (18%), Positives = 111/293 (37%), Gaps = 30/293 (10%)

Query: 56  PKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT 115
           PK +     +K+ +T+K LI  +  +      A   +I      D II   G+     + 
Sbjct: 84  PKEQIAEQKQKEQSTVKNLILHWYTNYIEKHRAQPLQIWQHIKVD-IIPLLGNKKLEHLK 142

Query: 116 TKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL--------SVERPK 165
           T+ I   ++    + +P  A + L++++  F +AV +  + +NP +         +E+P+
Sbjct: 143 TREITQALDKIVGRGSPVHANKVLSTLKQAFNYAVSRGEMLLNPAMTIRARDIGGIEKPR 202

Query: 166 RKTEGIRPWTKEDMQ---QFKSFWSEGS--QPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220
                 R  + ++++   QF      G+  Q R A + +L +G+R  +   A        
Sbjct: 203 E-----RYLSLDEVKILWQFLDSEEHGTSFQIRAALKIILLTGVRTGEIRVAKWSEFDFE 257

Query: 221 IFSIK----TQKTGTIITVELPDGFMKLLAMTPI--GKETFFINNDKQKMNATQF--SIW 272
                      KT  ++ + L +   K+L         E      D Q + + +      
Sbjct: 258 NSLWTIPAENTKTNIVMRIHLTEMTKKVLRELKTHSDSEYVITGADDQSILSDRAMPRAV 317

Query: 273 FKAKATKAGVNKSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTK 324
            + ++     + +AH +R+  AT   +A       +    G K      TY K
Sbjct: 318 IRIQSRVGIPHWTAHDLRRTFATQLGEALHVDPVVIEKCLGHKMPKIMATYNK 370


>gi|16763108|ref|NP_458725.1| phage integrase [Salmonella enterica subsp. enterica serovar Typhi
           str. CT18]
 gi|29144590|ref|NP_807932.1| phage integrase [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
 gi|56414704|ref|YP_151779.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197363631|ref|YP_002143268.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|213426678|ref|ZP_03359428.1| phage integrase [Salmonella enterica subsp. enterica serovar Typhi
           str. E02-1180]
 gi|213586423|ref|ZP_03368249.1| phage integrase [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-0664]
 gi|213855469|ref|ZP_03383709.1| phage integrase [Salmonella enterica subsp. enterica serovar Typhi
           str. M223]
 gi|25301805|pir||AI1039 phage integrase [imported] - Salmonella enterica subsp. enterica
           serovar Typhi (strain CT18)
 gi|16505416|emb|CAD06766.1| phage integrase [Salmonella enterica subsp. enterica serovar Typhi]
 gi|29140228|gb|AAO71792.1| phage integrase [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
 gi|56128961|gb|AAV78467.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197095108|emb|CAR60654.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
          Length = 341

 Score = 86.2 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 39/268 (14%), Positives = 73/268 (27%), Gaps = 37/268 (13%)

Query: 83  HWGSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGVESRKH----------- 128
            W SL   +    +    +   I    GD    ++T        E+R             
Sbjct: 67  QWHSLYGQTLADPKRLLAKLSIICNGLGDPIASELTAGDFTKYREARLKGEVKNEDGVLM 126

Query: 129 ---TPSSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
               P +      ++  +F    +   + A NP   +   K     +     E++++   
Sbjct: 127 SPVKPRTVNLEQRNLSSVFGTLKKLGHWPAPNPLAGLPTFKIAEGELAFLAPEEIKRLLD 186

Query: 185 FWSEGSQPRLAF--EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
             ++   P L    +  L +G R S++       L     +    K     TV +     
Sbjct: 187 ACADSQSPSLLMIAKICLATGARWSEAENLQGHQLSKYRITYTKTKGKKNRTVPISQELY 246

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV----NKSAHGVRKFSATISA 298
             L             N  +          F+    +AG+     +  H +R   A+   
Sbjct: 247 DELPK-----------NRGKLFTP--CRKSFERAVKRAGIELPEGQCTHVLRHTFASHFM 293

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGA 326
             G     L    G   +     Y   A
Sbjct: 294 MNGGNILVLRDILGHADIKMTMVYAHFA 321


>gi|111221204|ref|YP_711998.1| integrase [Frankia alni ACN14a]
 gi|111148736|emb|CAJ60412.1| Integrase [Frankia alni ACN14a]
          Length = 405

 Score = 86.2 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 53/345 (15%), Positives = 112/345 (32%), Gaps = 43/345 (12%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKRE-YINSPRKKPTTLK 72
           ER  H ++++    G G           T    Y + +  +  +R   +    + P  + 
Sbjct: 6   ERANHVRVMWR-EGGRGSTPEYEKFASRTEAEVYKTLVEAAGNRRPTPVVEDGRPPRPIA 64

Query: 73  WL------ISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHI---RSG 122
            L       + Y  S     +   +   +E    + ++   G  +   +++  +     G
Sbjct: 65  GLPCTVETWATYWLSG-LSGVRGRTAKDYERDLRNHVLPLLGGLELTAVSSTDVGQWVKG 123

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQE---YVAINPCLSVERPKRKTEGIRPWTKEDM 179
           ++ R   P +       + VLF+ AV  E       NPC     P+   E +   T  ++
Sbjct: 124 LQERGLAPKTIRNQHGLLSVLFQAAVDHEPQAMRPGNPCARTRLPEASGEEMHFLTPAEL 183

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ------------------NNI 221
           ++  +      +P +    L  +GLR  ++     +++                   +  
Sbjct: 184 ERLLAALPPHYRPLV--TTLALTGLRWGEATGLTARNVDLLGTPGTTAVRQSLQRQADGS 241

Query: 222 FSIKTQKTG-TIITVELPDGFMKLLAM---TPIGKETFFINNDKQKMNATQFSIW-FKAK 276
             +   KT  +  TV LP   + +L        G E  F       +  + F    ++  
Sbjct: 242 LQLGPPKTRTSRRTVTLPAKLVDVLIPVWSGKEGDEMVFTTQRGSLVRHSHFYNRVWRPA 301

Query: 277 ATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
             +AG+      H +R   A     AG     +    G +++   
Sbjct: 302 VLRAGLVPGLRIHDLRHTHAAWLISAGRPLPSIQRRLGHRSITTT 346


>gi|300898394|ref|ZP_07116737.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 198-1]
 gi|300357934|gb|EFJ73804.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 198-1]
          Length = 416

 Score = 86.2 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 52/359 (14%), Positives = 122/359 (33%), Gaps = 39/359 (10%)

Query: 22  IYYFRKGHGRRIRLPYPHE----------STFIPAYMSALTGSTPKREYINSPRKKPT-- 69
            Y +R    R   +   +              I A      G +P     +  +K     
Sbjct: 38  RYDYRINGRRETLVIGQYGRDGISLAEAREELIAAKKLLKAGQSPAAAKRDGIKKIRGAE 97

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVES--R 126
           T       Y K      LA ++R   ++  D+ I+   G+    +ITT  +R   +    
Sbjct: 98  TFAVHTDSYMKHVI---LAESTRAMKQAVIDRDILPVLGNKMMAEITTSMVRDLCDRIVE 154

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE--RPKRKTEGIRPWTKEDMQQF-K 183
           +   ++A+Q    +  +++ A  + +   NP   ++           R  T E++  F +
Sbjct: 155 RGGRATAVQAREIISSVYRHANDRGHGLFNPAADIKPSSIAIFKPRERTLTPEEIGLFFR 214

Query: 184 SFWSEGSQ--PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIITVEL 237
           +  + G+    ++A + +L + +R  +   A    +    ++        K      + L
Sbjct: 215 TLDAIGAMGTMKMALKLVLITMVRKGEFTNATWDEIDFKKWTWTIPSDRMKGSRAHVIYL 274

Query: 238 PDGFMKLLAMTP--IGKETFFI---NNDKQKMNATQFSIWFKAKATKAGVNK------SA 286
           P     +L       G   + +    N ++ ++    +            +       + 
Sbjct: 275 PKQAQDILVGLQMCAGGSEYLVPGRYNFRKPLSNAALNSLIDRTVKIINEDGEHIQDFTV 334

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345
           H +R+ ++T+  +AG  +  +      +       Y K A+  R      ++ + ++DS
Sbjct: 335 HDMRRTASTLLHEAGYPSDWIEKALAHEQKGVRAVYNK-AEYARQRAYMLQQWADMIDS 392


>gi|260771386|ref|ZP_05880311.1| phage integrase family protein [Vibrio furnissii CIP 102972]
 gi|260613512|gb|EEX38706.1| phage integrase family protein [Vibrio furnissii CIP 102972]
          Length = 395

 Score = 86.2 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 47/303 (15%), Positives = 103/303 (33%), Gaps = 26/303 (8%)

Query: 55  TPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRK 113
             ++    +  K   T      ++ +      +A ++R    S +  ++  K G+    +
Sbjct: 83  AKEKARAKARTKDAETFGAWAQKWLRGYQ---MADSTRDMRRSVYARELEGKFGNQKLTE 139

Query: 114 ITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
           IT + +R+  ++   +  P++A+     +  +++WA+ +     NP   V          
Sbjct: 140 ITHEDLRALTDAIVERGAPATAVHTRDIVLQVYRWAIERGQKVENPADFVRPASIARFEP 199

Query: 172 RPWTKEDMQ---QFKSFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK- 225
           R  T   ++    ++     G+ P  R A + LL + +R S+   A    +  +      
Sbjct: 200 RDRTLTPVEIGLMYRYMEKVGTTPSIRAAVKLLLLTMVRKSELTNATWSEINFSEALWTI 259

Query: 226 ---TQKTGTIITVELPDGFMKLLAMTPI---GKETFFINNDKQ--KMNATQFSIWFK--- 274
                K      V L    M +L        G +    +       M++   +       
Sbjct: 260 PKERMKRRNPHLVFLSRQAMDILIALKTFAGGSDYILPSRYDSDAPMSSATMNRVMDLTY 319

Query: 275 AKATKAGVNKS---AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
             A K G + S    H +R+ ++T+  +AG     +      +       Y K   R + 
Sbjct: 320 KAAQKEGQSLSKFGPHDLRRTASTLLHEAGYNTDWIEKCLAHEQKGVRAVYNKAEYREQR 379

Query: 332 GIK 334
              
Sbjct: 380 AAM 382


>gi|125470067|gb|ABN42259.1| gp55 [Sodalis phage phiSG1]
          Length = 343

 Score = 86.2 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 53/343 (15%), Positives = 99/343 (28%), Gaps = 44/343 (12%)

Query: 14  ERTRHGKIIYYFR---KGHGRRIRLPYPHE---STFIPA---YMSALTGSTPKREYINSP 64
           +  R GK  Y  R    G  R       ++     F      + +       ++  +   
Sbjct: 6   DTGRPGKKRYRVRYQGIGGSRTAEFADMNDACREYFQREKHMWRAISEKEVQRKRPVTIR 65

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
                    L  E   +       +  +  F S + +            ITT  +     
Sbjct: 66  ELMIFYFGRLCDELEMNNIGRDYFLGQKGVFLSLYQRWR--GSKTPIVDITTPDL----- 118

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW--TKEDMQQF 182
                P S       +R  +  A+      INPC               W  T     ++
Sbjct: 119 ----KPISLHNHRRFIRRAYDCAINVGMCNINPCT-----IENKSRNAAWKGTTRKYAKY 169

Query: 183 ----KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ----------K 228
               +   S+  + RLA       GLR  +       ++ ++   +             K
Sbjct: 170 HEVQRLMQSDEPRQRLAVYLGAACGLRLGEVAMLSYDNIFDDSIVLDRHLTKSGDYPGIK 229

Query: 229 TGTIITVELPDGFMKLLAMTPIGKETF-FINNDKQKMNATQFSIWFKAKA-TKAGVNKSA 286
            G    + +   F +LL     G   F F ++     +   FS      A  KA   K+ 
Sbjct: 230 YGVDNEIPVTPEFHRLLNDVQKGNSRFVFESSRGSHFSMAGFSKSIVMPAFVKADFKKTF 289

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADR 328
           H +R ++ ++  + G +  ++    G  + +    TY     R
Sbjct: 290 HSLRHYAVSVWVERGVSLVQISQWLGHASPEVTLRTYAHLFKR 332


>gi|329116727|ref|ZP_08245444.1| site-specific recombinase, phage integrase family [Streptococcus
           parauberis NCFD 2020]
 gi|326907132|gb|EGE54046.1| site-specific recombinase, phage integrase family [Streptococcus
           parauberis NCFD 2020]
          Length = 379

 Score = 86.2 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 49/307 (15%), Positives = 100/307 (32%), Gaps = 37/307 (12%)

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK 113
           S P +E     +    T   L+ E++       +   S  S  +         GD    +
Sbjct: 56  SRPTKEEEQQLKLANKTFSQLLEEWKL-VRISEIKPASFKSEINSLIYFRNDVGDLKLSE 114

Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP-------KR 166
            TT+ I++ +        +       +  +F +A R  Y+   P  +V  P       K 
Sbjct: 115 YTTQMIQNYLMGLNIANVTRKNRKIYLNAIFGFAERMNYIDKTPVKNVVIPRVRKDYEKL 174

Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQ----- 218
           K       +KE++    S+     +     LA EF+  +GLR ++        +      
Sbjct: 175 KKAQNHFISKEELGLVISYCQNHDKDIRYTLAMEFIFLTGLRFAEFIGVRYCDVDFDNRL 234

Query: 219 --------------NNIFSIKTQKTGTIITVELPDGFMKLLAMTPI---GKETFFINNDK 261
                         ++     T+  G++ T+ L +   +++         +   F+ +  
Sbjct: 235 LKVDHTIDYVAHNYDDRVLQTTKTVGSVRTIILSERCFEIIDYFKKYCLDEIFIFVTDRG 294

Query: 262 QKMNATQFSIWFKAKATKA---GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           Q M   +   + K     A   G   + H +R    ++ A+ G     +M   G      
Sbjct: 295 QIMRQPKLYQFIKNMCDTALGEGRAYNIHMLRHSHISLLAELGVPIKAIMERVGHVDESI 354

Query: 319 A-ETYTK 324
             + Y+ 
Sbjct: 355 TLKVYSH 361


>gi|54308887|ref|YP_129907.1| integrase-recombinase [Photobacterium profundum SS9]
 gi|46913317|emb|CAG20105.1| hypothetical integrase-recombinase [Photobacterium profundum SS9]
          Length = 180

 Score = 86.2 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 30/162 (18%), Positives = 49/162 (30%), Gaps = 12/162 (7%)

Query: 195 AFEFLLYS-GLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFMKLLAM--TP 249
            F   LY+ GLR  +     V  +  +     I+  K G    V +P   +  L      
Sbjct: 13  IFFLTLYTMGLRLGEGLSLTVHDIDQHTMQVHIRDGKGGKDRLVPVPQRTLNALRAHWLT 72

Query: 250 IGKETFFINNDK----QKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGAT 303
                             M+        K      G+NK  S H +R   AT   + G  
Sbjct: 73  HRHPRLIFPGKGCNTDNPMDRGGVQKAMKLVLKDCGINKPISPHSLRHCFATHLLEQGLD 132

Query: 304 AHELMATYGWKTVDQAETYTKGAD-RIRLGIKNSRRISSVVD 344
              L    G  +++    YT+    + R       R++  + 
Sbjct: 133 LRSLQILLGHASLNTTARYTRMTQIKQRDAALAINRLADALT 174


>gi|307592485|ref|YP_003900076.1| integrase family protein [Cyanothece sp. PCC 7822]
 gi|306986130|gb|ADN18010.1| integrase family protein [Cyanothece sp. PCC 7822]
          Length = 323

 Score = 86.2 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 38/282 (13%), Positives = 89/282 (31%), Gaps = 32/282 (11%)

Query: 85  GSLAVNSRISFESYFDQI-------IRKSGDFDYRKITTKHIRSGVESRKH--TPSSAIQ 135
             L   SR +     D +          +   D+ ++  +H  +          PS+  Q
Sbjct: 36  AQLRPQSRQTMRRNLDLMAGLLTNRRCDAKSLDWAQLRYQHTIALRTVLLELYAPSTVNQ 95

Query: 136 FLTSMRVLFKWAVRQEYVAI-NPCLSVERPKRKTE---GIRPWTKEDMQQFKSFWSE--- 188
            LT++R +   A + + ++  +   ++E P+   +     R     ++       +    
Sbjct: 96  MLTALRRVLSEARKLKLISSEDYVDAIELPRVSYQTELKGRYLHPHEVTALMQVATSDES 155

Query: 189 --GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKL 244
             G +       ++ +GLR  +     +      +    I+  K G    V LP     L
Sbjct: 156 VFGFRDSALLAIVIGAGLRRGEVVALRLGDFDLTSGDLHIRGAKGGKSRIVPLPQKCQLL 215

Query: 245 LAMTPI-----GKETFFINNDK-----QKMNATQFSIWFKAKATKAGVN-KSAHGVRKFS 293
           +                  +       + +++       + +A +A ++  S H  R+  
Sbjct: 216 VKAWLAVRSMSPGPLLMAISKGKELLWRSLSSQSVLYILQKRAQQAEISSCSPHDCRRTY 275

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADR-IRLGIK 334
            +   +AG     +    G  +      Y +  D   R  ++
Sbjct: 276 ISNLLEAGVDIVTVSQLAGHSSTLTTAKYDRRGDEVKRRAVE 317


>gi|307244434|ref|ZP_07526544.1| site-specific recombinase, phage integrase family
           [Peptostreptococcus stomatis DSM 17678]
 gi|306492191|gb|EFM64234.1| site-specific recombinase, phage integrase family
           [Peptostreptococcus stomatis DSM 17678]
          Length = 350

 Score = 86.2 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 52/296 (17%), Positives = 96/296 (32%), Gaps = 16/296 (5%)

Query: 43  FIPAYMSALTGSTPKREYINSP---RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF 99
           FI  Y +          Y  SP     K  T + +  ++  + H+  ++ ++   +++ +
Sbjct: 44  FIGYYRTQKEAIMALAHYNESPYDISAKTLTFEEIYDKW-SNIHFEKISNSNITGYKAAY 102

Query: 100 DQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL 159
            +I     D  + +I    +++ V+       +  +    + +++ +AV  + V +    
Sbjct: 103 -RICEPIKDMIFSEIRLDQLQNLVDKSGKNTPTLKKIKIMLGLMYDYAVIHDIVPVEKRE 161

Query: 160 SVERPKRKTEGIR---PWTKEDMQQFKSFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGV 214
            V        G       TK    Q    WS             +LYSG+R  +      
Sbjct: 162 KVRYLDISKPGNPNSYTRTKFSSAQINKVWSAKDDDIYYSVVLMMLYSGVRIGELLEVKK 221

Query: 215 Q--HLQNNIFSIKTQKTGTIIT-VELPDG-FMKLLAMTPIGKETFFINNDKQKMNATQFS 270
              HL    F I   KT   I  V + D              E      +   M   +F 
Sbjct: 222 SDVHLDEQWFFIAKSKTMAGIREVPIADKVLPFFEYWMGRDGEYLISTPEGDSMTYDRFY 281

Query: 271 IW-FKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET-YTK 324
              +KA  +   +  + H  R  + +    AG     +    G    D  E  YTK
Sbjct: 282 RTHWKALMSYLDIKHTPHCTRYTTISSLTQAGVDDRIIKQIVGHSGKDVTEIVYTK 337


>gi|301299373|ref|ZP_07205654.1| site-specific recombinase, phage integrase family [Lactobacillus
           salivarius ACS-116-V-Col5a]
 gi|300853027|gb|EFK80630.1| site-specific recombinase, phage integrase family [Lactobacillus
           salivarius ACS-116-V-Col5a]
          Length = 305

 Score = 86.2 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 40/284 (14%), Positives = 93/284 (32%), Gaps = 31/284 (10%)

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
           R+K         ++      G+++  +   +      + + + D +  +IT    +  + 
Sbjct: 2   RRKRILFYNYFEDWINIYKVGAVSERTIDKYWLAHRHLKKLAPDLELGQITRIEYQKIIN 61

Query: 125 SRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLS--VERPKRKTEGIRPWTKEDMQ 180
               T   ++ + F   ++     A     +  +P     V+  K   +  +  ++ +++
Sbjct: 62  EFAETHEKATTMDFHHQLKSSILDAFDDGLIDRDPTRKTVVKGKKPGKKKQKYLSEFELK 121

Query: 181 QFKSFWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSIKTQKT--------- 229
                   G++P L +  LL   +GLR  ++     +        I   KT         
Sbjct: 122 MLLRHLHLGTEPNLDWLILLVAKTGLRFGEALGLTKEDFDFENQIINISKTWDYKAARGG 181

Query: 230 -----------GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKAT 278
                         +  +L   F  LL   P G   F     K+++  +  +   K    
Sbjct: 182 FKSTKNKSSIRKVQLDWKLCMQFNTLLRDFPDGTPIFV----KKRVFNSTVNNRLKQYCE 237

Query: 279 KAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
           +  +   S HG+R   A++   AG +   +    G   +   + 
Sbjct: 238 ELAIPIISIHGLRHTHASMLLFAGVSIASVAKRLGHADMTTTQQ 281


>gi|261207999|ref|ZP_05922677.1| predicted protein [Enterococcus faecium TC 6]
 gi|260077757|gb|EEW65470.1| predicted protein [Enterococcus faecium TC 6]
          Length = 378

 Score = 86.2 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 54/371 (14%), Positives = 127/371 (34%), Gaps = 53/371 (14%)

Query: 10  FVTKERTRHGKIIY-----YFRKGHGRRIRLPYPH---ESTFIPAYMSALTGSTPKREYI 61
           ++  +  ++GK +Y     Y      +R ++   +           +  L      +   
Sbjct: 2   WIETKTDKNGKKVYKYNERYIDPKTRKRKKVSITYKNKSRETQKVALLELNKKIDIKLNE 61

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD-YRKITTKHIR 120
            + +K   T   L+ E+        +  ++     +  + I +K  +      I T  + 
Sbjct: 62  KTLQKPDLTFHELVEEWLVIYK-RQVKESTYYPTNNILNTIKKKIPETYIVSGINTVDLN 120

Query: 121 SGVESRKHTPSSAIQFLTSMR----VLFKWAVRQEYVAINPCLSV-----ERPKRKTEGI 171
           +  E   +    + ++++ ++    +LF +A+++ YV  NP   V        K      
Sbjct: 121 NIFEDMIYKDDLSNKYVSVIKSKLNLLFSYAMKKGYVEKNPINEVVIDYKRESKTIKIKD 180

Query: 172 RPWTKEDMQQFKSFWSEGSQPR-LAFEFLLYSGLRCSDSCRAGVQHLQ----------NN 220
           +    ++ ++   F +  ++   L F++L  +G+R  ++       +           N 
Sbjct: 181 KFLEDDEYKRLVDFTTSHNKRYSLLFQWLYLTGMRPGEAIALSKDDVHITNNNASVVING 240

Query: 221 IFSIKTQ-----------KTGTIIT-VELPDG----FMKLLAMTPIGKETFFINNDKQKM 264
               + +           KT   +  ++LP      + +LL + P G+   F        
Sbjct: 241 TMMYRERSIADMKKSDSTKTAAGMREIDLPKKAIAIYNELLELNPNGQF-LFQTTKGTPF 299

Query: 265 NATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-T 321
             T  + + +       ++K  S+H  R    +  A+ G   + +    G +  D  E  
Sbjct: 300 QLTAINTYLRNHKADMKIDKKLSSHIFRHTHISKLAELGTPLYAIQDRVGHENSDITEKI 359

Query: 322 Y---TKGADRI 329
           Y   TKG    
Sbjct: 360 YLHVTKGVKEK 370


>gi|255010479|ref|ZP_05282605.1| phage integrase [Bacteroides fragilis 3_1_12]
          Length = 338

 Score = 86.2 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 42/279 (15%), Positives = 86/279 (30%), Gaps = 43/279 (15%)

Query: 85  GSLAVNSRISFESYFDQI--------IRKSGDFDYRKITTKHIRSGVESRKHTPS-SAIQ 135
            +L+ N+  S+      +         ++        IT   +   ++S +   S S   
Sbjct: 26  RNLSANTLKSYRDAIRLLMPFVAKCVKKEVDKILLADITDARVVDFLDSLERNRSCSIKT 85

Query: 136 FLTSMRVLFKWAVRQEYVAIN-P--------CLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
               +  +  +A   +Y+++N P           +   K +   I    KE+M       
Sbjct: 86  RNLRLAAVCSFA---KYISVNCPEHIEWSRNIRIIPVKKTERTLITYLEKEEMNALLDAP 142

Query: 187 SEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHL-----QNNIFSIKTQKTGTIITVEL 237
            + +    +      FL  +G R  ++    ++ L     +       T K        L
Sbjct: 143 DKNTSQGWRDYALLLFLYNTGARADEAATLLIRDLSLPKRKGLAVVSITGKGNKTRRCPL 202

Query: 238 ----PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG-----VNK---S 285
                D    ++       E  F+N   Q +            A K       + K   S
Sbjct: 203 WQHTRDALSSIIKNR-TKDEYVFLNRFGQPITRFGIYEMVTRYAEKIKELIPTIKKKRVS 261

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            H +R  +AT    +G   + + A  G  +++    Y +
Sbjct: 262 PHTIRHTTATHLLQSGVDINTIRAWLGHVSINTTNIYAE 300


>gi|154500987|ref|ZP_02039025.1| hypothetical protein BACCAP_04674 [Bacteroides capillosus ATCC
           29799]
 gi|150270011|gb|EDM97530.1| hypothetical protein BACCAP_04674 [Bacteroides capillosus ATCC
           29799]
          Length = 361

 Score = 86.2 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 48/317 (15%), Positives = 88/317 (27%), Gaps = 77/317 (24%)

Query: 88  AVNSRISFESYFD-QIIRKSGDFDYRKIT----TKHIRSGVESRKHTPSSAIQFLTSMRV 142
             ++R +++  +D  I  + G      I      +   S +  +   P+S     T +  
Sbjct: 38  KESTRGNYKYMYDKYIRDEIGYMKLANIKYSDIKRFYLSLIHEKGFKPNSMEIIHTILHP 97

Query: 143 LFKWAVRQEYVAINPCLSV----------ERPKRKTEGIRPWTKEDMQQFKSFW---SEG 189
           +F  AVR   + +NP   V          E+PKRK       T+     F S+       
Sbjct: 98  VFSTAVRDGIIRLNPTDGVMNEIKRTHNWEKPKRK-----ALTESQQSAFISYVSSSPTY 152

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQH--LQNNIFSI-------KTQKTGTI-------- 232
                 F  LL +G R  +      Q       I SI       K +KTG +        
Sbjct: 153 KHWLPIFTVLLGTGCRIGEVVGLRWQDCDFAEGIISINHNLVYRKREKTGKMGFHITTPK 212

Query: 233 -----ITVELPDG-----FMKLLAMTPIG---------KETFFINNDKQKMNATQFSIWF 273
                  + + +        + L     G             F +   + ++    +   
Sbjct: 213 TSAGIRIIPMLEEVRHTLLQERLRQMEDGFNDTVIDGYSGFIFSSRYGEAISPHCVNRAI 272

Query: 274 KAKAT--------KAGVNKSA---------HGVRKFSATISADAGATAHELMATYGWKTV 316
           +            +A   K A         H +R    T   +       +    G   +
Sbjct: 273 ERICRDYNAEETLRAKQEKRAPQLLPHFSCHNLRHTFCTRFCENEKDLKVIQEIMGHADI 332

Query: 317 DQAE-TYTKGADRIRLG 332
                 Y +     ++ 
Sbjct: 333 TTTMNIYNEATKERKVA 349


>gi|38637721|ref|NP_942695.1| putative integrase/recombinase [Ralstonia eutropha H16]
 gi|32527059|gb|AAP85809.1| putative integrase/recombinase [Ralstonia eutropha H16]
          Length = 420

 Score = 86.2 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 35/281 (12%), Positives = 76/281 (27%), Gaps = 28/281 (9%)

Query: 87  LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG----VESRKHTPSSAIQFLTSMRV 142
           L   +  +            G  +                    + +  S  + ++ +R 
Sbjct: 137 LRTTTLRARMRVIALFADFLGSRNITFFDQVQPADLCAFVTAQHRLSAKSVSRIVSDVRC 196

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRP--WTKE----DMQQFKSFWSEGSQPRLAF 196
             ++ + +  +  +    +       +   P  W  E     ++       +G +    F
Sbjct: 197 FLRFLLMRGILQQDLSHVLPVVHVPRDATIPSVWDPEVLTKLLEAVDRTSPKGKRDYAIF 256

Query: 197 EFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLL-------AM 247
                 GLR  D     +  L+       ++  KT T + + L +   + L         
Sbjct: 257 LLACRLGLRVGDIRALSLDDLKWETATIEVRQSKTLTPLCLPLTEEVGEALIDYLRSGRP 316

Query: 248 TPIGKETFF-INNDKQKMN-ATQFSIWFKAKATKAGVN------KSAHGVRKFSATISAD 299
               +E F  +N        A       +     AG++         H +R   AT    
Sbjct: 317 QSDHREVFLTLNAPFLPFREADSLYWIVRHWKAIAGIHFRTPQRHGLHSLRHTLATRLLH 376

Query: 300 AGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSRRI 339
                  +    G  T      Y K   + +R    N+ ++
Sbjct: 377 EQTPFQVISDILGHATTASTLIYAKTDVETLRTAALNTEKM 417


>gi|325678051|ref|ZP_08157688.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
 gi|324110268|gb|EGC04447.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
          Length = 431

 Score = 86.2 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 39/267 (14%), Positives = 80/267 (29%), Gaps = 40/267 (14%)

Query: 97  SYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAIN 156
            YFD +       +   +  +   +   +   T ++   +  ++    K+AV+   V+ N
Sbjct: 122 RYFDTVFPDITLAEVTAVELQKFYNDKFAEGITANTIKHYHANIHKALKYAVKIGLVSCN 181

Query: 157 PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ- 215
                +RPK        +  +++++  S +  G +  +      Y GLR S+        
Sbjct: 182 ESEKTDRPKLDKYEATFYNSKELERLFSVF-RGDRMEVVVLIAAYYGLRRSEIIGLRWDA 240

Query: 216 -HLQNNIFSIKTQ------------------KTG-TIITVELPDGFMKLLAMTPIGKET- 254
               NN  +I  +                  KT  +  T+ L      +L       E  
Sbjct: 241 IDFDNNTITIHAKAYNVYEDGKLVVKFENKLKTKASHRTLPLIPYIADVLRAKKEQDEYR 300

Query: 255 ---------------FFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISA 298
                             +   + +     +  F     K  + K   H +R   A++  
Sbjct: 301 STVLKSGYDHEYEDYICTDEFGRLITPNYVTDHFANVIKKYKLKKIRFHDLRHSCASLLL 360

Query: 299 DAGATAHELMATYGWKTVD-QAETYTK 324
             G     +    G  T    A+ Y+ 
Sbjct: 361 ANGVPMKAIQEWLGHSTFHVTADFYSH 387


>gi|284989349|ref|YP_003407903.1| integrase family protein [Geodermatophilus obscurus DSM 43160]
 gi|284062594|gb|ADB73532.1| integrase family protein [Geodermatophilus obscurus DSM 43160]
          Length = 397

 Score = 86.2 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 44/274 (16%), Positives = 94/274 (34%), Gaps = 41/274 (14%)

Query: 86  SLAVNSRISFESYFDQ-IIRKSGDFDYRKIT----TKHIRSGVESRKHTPSSAIQFLTSM 140
           +L+  +  ++ +  DQ ++   G+   R+++     +H+R  + S KH P+ A    + +
Sbjct: 88  NLSPTTMQAYRNRLDQQVLPGLGNLRVRELSIGNIDRHLR--LVSDKHGPAVAKMTKSVL 145

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTE-GIRPWTKEDMQQFKSFWSEGSQPRLA---- 195
             +   A R + +  NP       K  T+   +  T ++ +   +        R      
Sbjct: 146 SGVCGLAARHDALDRNPVRDTGSLKAPTKKAPKSLTADEARTLLAQLDADETARRRDVPD 205

Query: 196 -FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-----------------VEL 237
              F+L SG R  ++       L  +  ++  + T   +T                 + L
Sbjct: 206 LVAFMLASGCRIGEAAAVTRGDLDLDAGTVDVRATIVRVTGQSLVRKGNKTASGARTLLL 265

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQ-KMNATQFSIW---------FKAKATKAGVNK-SA 286
           P   ++ L                +  +       W          +A    AG    ++
Sbjct: 266 PPWCVERLRRRAARPNALEEGAGAEAPVFPAPLGGWRDPSNTQADLRAAFDSAGFGHVTS 325

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
           H +RK +AT+  +AG +A  +    G       +
Sbjct: 326 HVLRKTTATMLDEAGLSARAIADQLGHANPSLTQ 359


>gi|312200641|ref|YP_004020702.1| integrase family protein [Frankia sp. EuI1c]
 gi|311231977|gb|ADP84832.1| integrase family protein [Frankia sp. EuI1c]
          Length = 413

 Score = 86.2 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 53/374 (14%), Positives = 121/374 (32%), Gaps = 60/374 (16%)

Query: 10  FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
           ++  + + HG++    +       R  +    T   A          +         +P 
Sbjct: 19  YLGADGSWHGRVTVGVKDNGKPDRR--HVRGKTETEAIAKVRKLERERDNGTVRKPGRPW 76

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH 128
           T+   +  + ++    S++ N+   +       ++   G     ++  +H+ S +   + 
Sbjct: 77  TVARWLEHWVENIAAPSVSENTIDGYRVAVRVHLVPGLGAHRLERLEPEHVESLMARMQT 136

Query: 129 T---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +   P++A Q L ++R     AVR+ +V  N     + P+     + P++  ++QQ    
Sbjct: 137 SGSAPATAHQALRTLRTALGEAVRRGHVGRNVASLAKPPRLTEAEVEPYSVAEVQQLLME 196

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------------- 232
            ++  +    +   L  GLR  ++       +  +   I+ ++                 
Sbjct: 197 AAKR-RNSARWVLALALGLRQGEALGLRWADVDLDAGVIRVRRGRLRPKYRHGCATPCGR 255

Query: 233 ------------------------ITVELPDGFMKLLAMTPIGKET-------------- 254
                                    ++ LPD  +++L      ++               
Sbjct: 256 KAGYCRDRVQIRKDTKDTKSRAGTRSIGLPDELIEILRRHKDRQDKERAEAGNLWQDGGW 315

Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGW 313
            F +   + +N       +KA    AG+ +   H  R  +AT+    G     +M   GW
Sbjct: 316 LFASETGRLLNPNTDYHEWKALIAVAGLRDARLHDARHTAATVLLLLGVPDRTVMGIMGW 375

Query: 314 KTVDQAETYTKGAD 327
            T D    Y    D
Sbjct: 376 ST-DMRRRYQHLTD 388


>gi|187735106|ref|YP_001877218.1| integrase family protein [Akkermansia muciniphila ATCC BAA-835]
 gi|187425158|gb|ACD04437.1| integrase family protein [Akkermansia muciniphila ATCC BAA-835]
          Length = 382

 Score = 86.2 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 45/247 (18%), Positives = 81/247 (32%), Gaps = 20/247 (8%)

Query: 85  GSLAVNSRISFE---SYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMR 141
                 +R  F        +   +      R IT +  R+ +E    T     +    + 
Sbjct: 106 QDRRKRTRDDFRYISRRLLRFCPEMARRPVRFITPRECRACLEKSFDTLRQRHKARLVLS 165

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE--GSQPRLAFEFL 199
            +F  AV++ +   NP   V+ P+ K   I   + E+M++  +   E  G     A   +
Sbjct: 166 GIFGTAVKRGWCTENPVAYVDLPRLKEHSIPVLSLEEMRRLLAAAEEYDGGACLAAVGLM 225

Query: 200 LYSGLRCSDSCRAGVQHL--QNNIFSIKTQ--KTGTIITVELPDGFMKLLAMTPIGKETF 255
           LY+G+R  +  R     +  +  + S++ +  KTG    V +      LL          
Sbjct: 226 LYAGIRPEEVRRLDWAQINLREGMVSLRARHSKTGGARIVTIRPVLGNLLERAVAMGFV- 284

Query: 256 FINNDKQKMNATQFSIWFKAKATKAGVNKS-----AHGVRKFSATISADAGATAHELMAT 310
                         + W +     AG +       A  +R   A+  A      H L   
Sbjct: 285 ----SGSVCPRNWPAKW-RELRRLAGWDGKEKKWPADMLRHTFASYFARHFKNLHVLQME 339

Query: 311 YGWKTVD 317
            G  + D
Sbjct: 340 MGHSSSD 346


>gi|71065594|ref|YP_264321.1| phage integrase [Psychrobacter arcticus 273-4]
 gi|71038579|gb|AAZ18887.1| probable phage integrase [Psychrobacter arcticus 273-4]
          Length = 444

 Score = 86.2 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 49/305 (16%), Positives = 91/305 (29%), Gaps = 23/305 (7%)

Query: 64  PRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI-RS 121
            ++   T   L  E+ +S          +     ++        G      I T  + R+
Sbjct: 137 KKRAMPTFSELADEWLQSQIASKQFEHRTIEQKRTHIAYAAAYIGRMPIDHIKTPDVLRA 196

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE---RPKRKTEGIRPWTKE- 177
             +  K T  +A +     + +F  A+ Q Y+  NP ++V     PK KTE      +  
Sbjct: 197 IKDIEKKTIPTAKRVRGVCQRIFALAIGQGYIDNNPAIAVADLMLPKPKTEHHHAIIEPI 256

Query: 178 ----DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGT 231
                +    S        +   +       R  D C             ++   QKTG 
Sbjct: 257 AFGKLLSDIDSVTDFYGHAQNILKLQALLFQRNGDMCSMRWDAIDFDAKTWTFSPQKTGN 316

Query: 232 I------ITVELPDGFMKLLAMTPI---GKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
                  + V LP   ++ L             F N+ +++    Q  +           
Sbjct: 317 RGDMVASLVVPLPTQAIEHLRALHALTSKTPYVFYNSRRKEKFEHQQQLNKFLWRLGYKD 376

Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
             + HG R  + T+  +    +  L        V  A    +  +R+ +  K    +   
Sbjct: 377 VHTPHGFRASARTLMVEQLGISETLAELQLGHNVRDAN--GRAYNRVTMIDKRRDMMQRW 434

Query: 343 VDSDD 347
            D  D
Sbjct: 435 ADYLD 439


>gi|161867961|ref|YP_001598142.1| hypothetical protein pOU7519_99 [Salmonella enterica subsp.
           enterica serovar Choleraesuis]
 gi|161087340|gb|ABX56810.1| IntI1 [Salmonella enterica subsp. enterica serovar Choleraesuis]
          Length = 337

 Score = 86.2 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 41/306 (13%), Positives = 91/306 (29%), Gaps = 62/306 (20%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129
           ++ + R+   +   ++ +  ++  +    IR  G      + +  + + +      RK +
Sbjct: 16  VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75

Query: 130 PSSAIQFLTSMRVLFK--WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            S+  Q L ++   +         ++       + RP+         T +++ +   F  
Sbjct: 76  VSTHRQALAALLFFYGKVLCTDLPWLQ-----EIGRPRPSRRLPVVLTPDEVVRILGFL- 129

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
           EG   RL  + L  +G+R S+  +  V+     +    ++  K      + LP+     L
Sbjct: 130 EGEH-RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSL 188

Query: 246 AMTPIGKETFFINN---------------------------------------------D 260
                    +++ +                                              
Sbjct: 189 REQLSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVR 248

Query: 261 KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           +  M    F   FK    +AG+ K  +    R   AT    +G     +    G   V  
Sbjct: 249 RHHMYDQTFQRAFKRAVEQAGITKPATPPTFRHSFATALLRSGYDIRTVQDLLGHSDVST 308

Query: 319 AETYTK 324
              YT 
Sbjct: 309 TMIYTH 314


>gi|146277760|ref|YP_001167919.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17025]
 gi|145556001|gb|ABP70614.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17025]
          Length = 332

 Score = 86.2 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 54/317 (17%), Positives = 103/317 (32%), Gaps = 27/317 (8%)

Query: 25  FRKGHGRRIRLPYPHESTFIPAYM-SALTGSTPKREYINSPRKK-----PTTLKWLISEY 78
           FR G      +    E      Y   A T +  + E ++  R++      TT++ L + Y
Sbjct: 4   FRIGRLNGRFVVSWWEDGARRRYRLDARTRAEAEVEALDRIRRETLPAGATTVRDLWAAY 63

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS--SAIQF 136
                   +      +  S  + ++   G     +IT +  RS  ++R+ T S  +    
Sbjct: 64  LADRRGRPVE----RNMRSSGNAVLPHFGALRPDQITPEACRSYTKARRKTVSVGTVWTE 119

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196
           L  +R    WA ++  + + P   +ERP +     R  T  ++ +      E    +LA 
Sbjct: 120 LGHLRTCLLWAAKRGLIPVAP--HIERPAKPAPRDRYLTHAEVSRLMEAECEP-HIKLAI 176

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIK-------TQKTGTIITVELPDGFMKLLAMTP 249
             LL +  R           +      I+        +K    + +          A   
Sbjct: 177 TVLLTTAARVGAVLELTWDRVDLERGQIRLRVDAEGPRKGRATVPINNTLRAALTAARAA 236

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELM 308
              +                   F    + AG+ + + H +R  +A   A+AG    E+ 
Sbjct: 237 ALSDHVIEWAGGP---VKCIRKGFLRAVSNAGLSDVTLHTLRHTAAVHMAEAGVPMDEIS 293

Query: 309 ATYGWKTVD-QAETYTK 324
              G   V   +  Y +
Sbjct: 294 QYLGHSNVQITSSVYAR 310


>gi|331697264|ref|YP_004333503.1| integrase family protein [Pseudonocardia dioxanivorans CB1190]
 gi|326951953|gb|AEA25650.1| integrase family protein [Pseudonocardia dioxanivorans CB1190]
          Length = 331

 Score = 86.2 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 34/236 (14%), Positives = 70/236 (29%), Gaps = 28/236 (11%)

Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYV--AINP------------CLSVERP 164
           +R        +  +  + L S+  LF + + ++ V    NP                   
Sbjct: 67  VRLEDGEAGLSARTIKRRLASVSGLFGYLMTRDDVAVDRNPVPSGLAGRRQGATRGAPLL 126

Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIF 222
           +      R    +++       +   + R     +L  GLR  +     +  L       
Sbjct: 127 RTPRTLPRVLGPDEVDAVLRVLNT-DRDRAMVLAMLLGGLRRCEVLALRLPDLSPGERRV 185

Query: 223 SIKTQKTGTIITVELPDGFMKLL------AMTPIGKETFFIN----NDKQKMNATQFSIW 272
            I   K G    V +   F   +          +  +  F+        + + A      
Sbjct: 186 FIAEGKGGHQRLVPVSAQFFAAVGEYLDRERPAVDHDRLFVVLRGPTRGRPLTAAGLDEI 245

Query: 273 FKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
                 +AG+ K + H +R    T   +AG     + A  G ++++    Y   A+
Sbjct: 246 VHGARWRAGLPKLTCHQLRHTCLTRLREAGMALEAVQAQAGHRSIESTRVYLHLAN 301


>gi|294490401|gb|ADE89157.1| site-specific recombinase, phage integrase family [Escherichia coli
           IHE3034]
 gi|327252209|gb|EGE63881.1| phage integrase family protein [Escherichia coli STEC_7v]
          Length = 416

 Score = 86.2 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 52/359 (14%), Positives = 122/359 (33%), Gaps = 39/359 (10%)

Query: 22  IYYFRKGHGRRIRLPYPHE----------STFIPAYMSALTGSTPKREYINSPRKKPT-- 69
            Y +R    R   +   +              I A      G +P     +  +K     
Sbjct: 38  RYDYRINGRRETLVIGQYGRDGISLAEAREELIAAKKLLKAGQSPAAAKRDGIKKIRGAE 97

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVES--R 126
           T       Y K      LA ++R   ++  D+ I+   G+    +ITT  +R   +    
Sbjct: 98  TFAVHTDSYMKHVI---LADSTRAMKQAVIDRDILPVLGNKMMAEITTSMVRDLCDRIVE 154

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE--RPKRKTEGIRPWTKEDMQQF-K 183
           +   ++A+Q    +  +++ A  + +   NP   ++           R  T E++  F +
Sbjct: 155 RGGRATAVQAREIISSVYRHANDRGHGLFNPAADIKPSSIAIFKPRERTLTPEEIGLFFR 214

Query: 184 SFWSEGSQ--PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIITVEL 237
           +  + G+    ++A + +L + +R  +   A    +    ++        K      + L
Sbjct: 215 TLDAIGAMGTMKMALKLVLITMVRKGEFTNATWDEIDFKKWTWTIPSDRMKGSRAHVIYL 274

Query: 238 PDGFMKLLAMTP--IGKETFFI---NNDKQKMNATQFSIWFKAKATKAGVNK------SA 286
           P     +L       G   + +    N ++ ++    +            +       + 
Sbjct: 275 PKQAQDILVGLQMCAGGSEYLVPGRYNFRKPLSNAALNSLIDRTVKIINEDGEHIQGFTV 334

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345
           H +R+ ++T+  +AG  +  +      +       Y K A+  R      ++ + ++DS
Sbjct: 335 HDMRRTASTLLHEAGYPSDWIEKALAHEQKGVRAVYNK-AEYARQRAYMLQQWADMIDS 392


>gi|220930105|ref|YP_002507014.1| integrase family protein [Clostridium cellulolyticum H10]
 gi|220000433|gb|ACL77034.1| integrase family protein [Clostridium cellulolyticum H10]
          Length = 313

 Score = 86.2 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 42/276 (15%), Positives = 93/276 (33%), Gaps = 30/276 (10%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT--PSSA 133
           SE+ K   +G++   +   +     ++   S +    ++  +  ++ +     T    + 
Sbjct: 14  SEWIKIYKYGAVRPVTYQKYLMTLRRLTELSPNLKICELDKRSYQTLLNDYAETHERQTT 73

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSV--ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           + F   ++     A+ +  ++I+P   V  +         +  ++ ++Q      S    
Sbjct: 74  MDFHHHLKSAILDAIDEGLLSIDPTRKVVIKGKTATKRKNKYLSQFELQSLLKNLSLTDS 133

Query: 192 PRLAFEFLLY--SGLRCSDSCRAGVQHLQ----------------NNIFSIKTQKTGTII 233
           P   +  LL   +GLR S++                              ++T+ T +  
Sbjct: 134 PNWDWLILLISKTGLRFSEALALTPNDFDFSTHKISITKTWNYKGAEGGFMETKNTSSKR 193

Query: 234 TVELPDGFM---KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGV 289
            + +        + L       E  F+    +  N+T  +   K     AGV   S H +
Sbjct: 194 VIPIDAPLAVNFETLTKDLAANELIFV--QGRVFNST-VNSRLKYLCKTAGVPVISIHSL 250

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
           R   A++   AG +   +    G  +V    ETY  
Sbjct: 251 RHTHASLLIFAGVSIASIAKRLGHSSVTTTQETYLH 286


>gi|21223986|ref|NP_629765.1| traSA:integrase fusion protein [Streptomyces coelicolor A3(2)]
 gi|3319753|emb|CAA19919.1| traSA:integrase fusion protein [Streptomyces coelicolor A3(2)]
          Length = 768

 Score = 86.2 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 64/380 (16%), Positives = 103/380 (27%), Gaps = 71/380 (18%)

Query: 28  GHGRRIRLPY-----PHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSA 82
           G   RIR P+     P     +         S   R     PR    T K    ++ ++ 
Sbjct: 394 GGWARIRAPHTTKSFPDRQKRLAELWLIEIASDMSRGRYVDPRAARVTFKGYAVKWLET- 452

Query: 83  HWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSS----AIQFL 137
               +   S++  E        R  G         +HIR  V + ++ P+     A    
Sbjct: 453 --HGIDPASQVVVEQRLRLHAFRLIGSRPLDSFRPEHIRGLVSALENDPAVSGGYARNIY 510

Query: 138 TSMRVLFKWAVRQEYVAINP--CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195
             +R +   AV    +  NP    SV  P  +   + PW  E +Q  ++      + R  
Sbjct: 511 GDVRAVLSAAVDDGLLPRNPCSAKSVRPPAVEQRRVVPWLPEQVQAVRAALP--QRYRPM 568

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQ---------------NNIFSIKTQKTGTIITVELPDG 240
            +     GLR  +        +                         K      V LP  
Sbjct: 569 VDMGAGCGLRQGEIVGLAEDAVDFASGIVRVLRQVKLIRGKAVFAPPKCNKERDVPLPPS 628

Query: 241 FMKLLAM-------------------TPIGKETFFINNDKQKMNATQFSIW-FKAKATKA 280
               L                       +     F N     +  + F++  +K     A
Sbjct: 629 VADALPAHMDAFKPVEITLPWRKPDGPKVSARLLFTNTASGLVWRSNFNVQEWKPALAAA 688

Query: 281 GV--------------NKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTK- 324
           G+                  H +R F A++  DAG +   +    G          Y   
Sbjct: 689 GLISEAGADGKYESAREHGMHALRHFYASVLLDAGESIKAVSEYLGHADPGLTLRVYAHL 748

Query: 325 ---GADRIRLGIKNSRRISS 341
                +R R  I  S R S 
Sbjct: 749 MPSSQERTRSAIDQSLRFSG 768


>gi|331674177|ref|ZP_08374937.1| site-specific recombinase, phage integrase family [Escherichia coli
           TA280]
 gi|331068271|gb|EGI39666.1| site-specific recombinase, phage integrase family [Escherichia coli
           TA280]
          Length = 390

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 51/277 (18%), Positives = 86/277 (31%), Gaps = 31/277 (11%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
           +K  + EY       +L+ ++   +E     +      F   ++T   +++ + SRK   
Sbjct: 94  IKSYLDEYLIICQNRNLSPSTIRGYEKCLSALSALH-KFHVSELTPAVLKNWIASRKTKL 152

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER---------PKRKTEGIRPWTKEDMQQ 181
            +    L+ +R     AV    + INP   V           P      + P+T  +   
Sbjct: 153 KTIRNNLSFLRSAIDEAVTDGLLTINPVTLVSASRYHVLDNTPGSGDYEVDPFTPAETAA 212

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-------------NNIFSIKTQK 228
                    + R  F F   +GLR S+ C      +                +      K
Sbjct: 213 IYDAC-HYPEWRNLFRFAFNTGLRSSELCALRWTDIDFIGNTAHVQTASVVGVIKSTKTK 271

Query: 229 TGTIITVELPDGFMKLLAMTP-IGKETFFINNDKQKMNATQFSIWFKAKA-----TKAGV 282
            GT       +    L A  P    ++ FI +D +       +   + KA      KAGV
Sbjct: 272 AGTRKVQLNSEALAALQAQKPYTALKSDFIFSDPKTRAPWANADAIRKKAWGPTLKKAGV 331

Query: 283 NKS-AHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
                +  R   AT     G     L    G K  + 
Sbjct: 332 RYRNPYQTRHTFATRHISQGVNLFWLAGQMGHKGPEM 368


>gi|307826179|ref|ZP_07656390.1| integrase family protein [Methylobacter tundripaludum SV96]
 gi|307732818|gb|EFO03684.1| integrase family protein [Methylobacter tundripaludum SV96]
          Length = 328

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 49/326 (15%), Positives = 102/326 (31%), Gaps = 28/326 (8%)

Query: 14  ERTRHGKIIYYFRKGHGRRIR---LPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
           ++T+ GK +    +    R+R   +       F   Y+S                    T
Sbjct: 4   KQTKDGKWLVEIDRKGIPRVRKSIVVKEDAERFEREYLSMHLARKKDEPTDLR------T 57

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---K 127
           LK L+  + K   +  + ++   S +   D +    G+    ++T +        R    
Sbjct: 58  LKELVELWYK---YQGINLSDGESRKRKLDDMASALGNPQACRLTAEQFVEHRYKRLQSG 114

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAI-NPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            +  +       +  +F    + + +   NP   V+  K +   +   + + ++      
Sbjct: 115 ISAKTVNNQHGYLSAVFNKLRKLKVIDYGNPINEVDFIKIQERQLSYLSVDQIKLLLDTI 174

Query: 187 SEGSQPRLAF---EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
             G   +  +   +  L +G R  ++ R   + L N   + +  K+    T+ L   F  
Sbjct: 175 KIGCVNQSTWYVAQICLRTGARWGEAERLRFKQLHNCRVTYEFTKSKKTRTIPLDGEFYN 234

Query: 244 LL---AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADA 300
            L   A      +  F N          F         +    +++H +R   A+     
Sbjct: 235 DLIRWAGYKNPDDRVFTNCIG------AFRRAVTRSEIELQKGQNSHVLRHSFASHFIMN 288

Query: 301 GATAHELMATYGWKTVDQAETYTKGA 326
           G     L    G   + Q  TY   A
Sbjct: 289 GGNILTLQKILGHADISQTMTYAHLA 314


>gi|238898767|ref|YP_002924449.1| APSE-2 prophage; integrase [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|211906286|gb|ACJ11661.1| integrase [Candidatus Hamiltonella defensa]
 gi|211906293|gb|ACJ11665.1| integrase [Candidatus Hamiltonella defensa]
 gi|211997715|gb|ACJ14803.1| integrase [Candidatus Hamiltonella defensa]
 gi|211997718|gb|ACJ14805.1| integrase [Candidatus Hamiltonella defensa]
 gi|229466527|gb|ACQ68301.1| APSE-2 prophage; integrase [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 381

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 45/263 (17%), Positives = 93/263 (35%), Gaps = 27/263 (10%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG-----VESRKHTPSSAIQFLTS 139
            SL+  +         ++  +     +  I    +++G        +  +P++  Q+L+ 
Sbjct: 93  KSLSNITEDEVTHVISEMKNRRHQQRWVSIKRASLKTGYQVPDFNDKAVSPATRSQYLSF 152

Query: 140 MRVLFKWAV-RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEF 198
           MR L + A     ++A  P L+++  K   + +R  ++E+  +  S  ++  +P + F  
Sbjct: 153 MRGLMRIAANEWGWLAK-P-LNLKVRKPNDKRVRWLSREEANRLISVVNQNFRPIVIFAL 210

Query: 199 LLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254
              +GLR S+      Q +           +  K G  I V L +   ++L         
Sbjct: 211 A--TGLRRSNIIHLEWQQIDMERKVAWIHPEQAKAGKAIGVALNETACRVLREQLGRHSR 268

Query: 255 FFINNDKQKMNATQFSI------------WFKAKATKAGV-NKSAHGVRKFSATISADAG 301
           +     K                       +K    KAG+ N   H +R   A+    +G
Sbjct: 269 WVFVRKKTVQGREGEKQDLVSKFRVDDNRAWKTGLKKAGIENFRFHDLRHTWASWLIQSG 328

Query: 302 ATAHELMATYGWKTVDQAETYTK 324
                L    GW++++    Y  
Sbjct: 329 VPLSVLQEMGGWESIEMVRRYAH 351


>gi|15799949|ref|NP_285961.1| putative integrase for prophage CP-933H [Escherichia coli O157:H7
           EDL933]
 gi|15829525|ref|NP_308298.1| integrase [Escherichia coli O157:H7 str. Sakai]
 gi|168763485|ref|ZP_02788492.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC4501]
 gi|217324265|ref|ZP_03440349.1| integrase [Escherichia coli O157:H7 str. TW14588]
 gi|12513018|gb|AAG54569.1|AE005202_7 putative integrase for prophage CP-933H [Escherichia coli O157:H7
           str. EDL933]
 gi|13359728|dbj|BAB33694.1| putative integrase [Escherichia coli O157:H7 str. Sakai]
 gi|189366394|gb|EDU84810.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC4501]
 gi|217320486|gb|EEC28910.1| integrase [Escherichia coli O157:H7 str. TW14588]
 gi|326338749|gb|EGD62568.1| Phage integrase [Escherichia coli O157:H7 str. 1044]
          Length = 324

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 84/220 (38%), Gaps = 24/220 (10%)

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +  + ++    L+ ++ L + A  +E+  ++    ++ P+ K + +R     + Q+    
Sbjct: 76  KPASVATKATHLSFIKALLR-AAEREWKMLDKAPIIKVPQPKNKRLRWLEPHEAQRLIDE 134

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGF 241
             E  +     EF L +GLR S+      Q +         + +  K+   I V L D  
Sbjct: 135 CPEPLKS--VVEFALATGLRRSNIINLEWQQIDMQRRVAWINPEESKSNRAIGVALNDTA 192

Query: 242 MKLLAMTPIGKETFFINNDK--------------QKMNATQFSIWFKAKATKAGVNK-SA 286
            ++L    IG    ++   K              +KM     + W KA   +AG++    
Sbjct: 193 CRVLKKQ-IGNHHRWVFVYKESCTKPDGTKAPTVRKMRYDANTAW-KAALRRAGIDDFRF 250

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           H +R   A+    AG     L    GW++++    Y   A
Sbjct: 251 HDLRHTWASWLVQAGVPLSVLQEMGGWESIEMVRRYAHLA 290


>gi|242280209|ref|YP_002992338.1| integrase family protein [Desulfovibrio salexigens DSM 2638]
 gi|242123103|gb|ACS80799.1| integrase family protein [Desulfovibrio salexigens DSM 2638]
          Length = 381

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 45/296 (15%), Positives = 93/296 (31%), Gaps = 24/296 (8%)

Query: 45  PAYMSALTGSTPK--REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI 102
                A  G   K  +E   +  K    L  +  EY K    G  +  ++I    Y + +
Sbjct: 71  DRLKKARHGEAVKTHKELREADLKANIRLDDIADEYFKVR--GESSQGAKIDKGRYDNHV 128

Query: 103 IRKSGDFDYRKITTKHIRSGVESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS- 160
               G    R +    +    +     + +S    L   R +  +  +         L  
Sbjct: 129 SPVIGSRPVRNLCQLDMERIKKKMDGMSAASIWGGLEITRRIINFGSKNGLCEQ---LGF 185

Query: 161 -VERPKRKTEGIRPWTKEDMQQFKSF---WSEGSQPRLAFEFLLYSGLRCSDSCRA--GV 214
            ++ P+R  E +   T + +++F      W      R   +  +++G+R  +  +     
Sbjct: 186 TIQMPRRDNEVVEYLTSDQLKRFLKVLEEWPSRDVCR-MLKIAMFTGMRRGEIFKLEDRD 244

Query: 215 QHLQNNIFSIKTQKTGTIITVEL----PDGFMK---LLAMTPIGKETFFINNDKQKMNAT 267
              Q ++  ++  K G  +++ +     D  +        T    E  F           
Sbjct: 245 CDFQQSLIFLRAPKGGKSVSIPMNGVVTDLLLDQIQWKNETFPESEFVFPGKKGAMRVNC 304

Query: 268 QFSIWFKAKATKAGVNKSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETY 322
             +   K KA      +  HG+R   A   A++G  +   +      K     + Y
Sbjct: 305 SAANRIKKKAILPREFRIFHGLRHHFAVTLANSGEFSLDMIGELLTHKDSSMTKRY 360


>gi|228948202|ref|ZP_04110486.1| Integrase/recombinase [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|228811560|gb|EEM57897.1| Integrase/recombinase [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
          Length = 322

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 89/289 (30%), Gaps = 26/289 (8%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           T+K  +S   +      L   +   +E +    +  +G    +++T  HI   + S   +
Sbjct: 31  TIKKALSTVIRQMRATGLRDRTISDYELHISHFMSVTGAEFLQELTVDHIYLWLSSMNVS 90

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-- 187
             + +  L  ++          ++ IN   S++  K  +      T  ++    S     
Sbjct: 91  NQTKLTRLKCLKAFLGRCFDNGWIEINFWKSIK-IKVDSPVKEGATDREINLLLSILDLT 149

Query: 188 --EGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQ--KTGTIITVELPDGF 241
                +   +   +  +G+R     +   +H+  +N +  I     K    I +   D  
Sbjct: 150 RFIELRDAASVLLMYQTGIRVGTLSQLEHKHVNLENKVLRIDGGIIKNHESIHLPFDDVL 209

Query: 242 MKLLAMT-----------PIGKETFFINNDKQKM----NATQFSIWFKAKATKAGV-NKS 285
            ++L               +     FI  +  ++         +      +   G+ N +
Sbjct: 210 ARVLGALMKQNDIIRKECRVNNNYLFITKNGGRIATSPTNNNITKRLSKHSRDYGLKNIN 269

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIK 334
            H +R+  A      GA    +    G   +     Y    D+  +   
Sbjct: 270 PHALRRGFAKNLLKKGANIALISKALGHSDLAVTTRYLH-LDKEEVAES 317


>gi|225378079|ref|ZP_03755300.1| hypothetical protein ROSEINA2194_03739 [Roseburia inulinivorans DSM
           16841]
 gi|225210080|gb|EEG92434.1| hypothetical protein ROSEINA2194_03739 [Roseburia inulinivorans DSM
           16841]
          Length = 349

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 73/235 (31%), Gaps = 32/235 (13%)

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG---- 189
            + L S+R  +++  + E +  +P + V+ PK   + I     +++         G    
Sbjct: 112 KRKLASLRSFYRYLYKNEMIGQDPAVKVDMPKIHEKTITRLDIDEVANLLDEVESGESLT 171

Query: 190 -----------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVE 236
                      ++       LL +G+R S+     +  +   NN   I  +K G  + V 
Sbjct: 172 EKQQKFHEKTKTRDLAMMTLLLGTGIRVSECVGLDMDDVDFKNNGIKIH-RKGGAEVVVY 230

Query: 237 LPDGFMKLLA----------MTPIGKETFFINNDKQKMNATQFSIWFKAKATK-AGVNK- 284
             +     L                    F++   ++++           +     +   
Sbjct: 231 FGEEVRSALMEYMVERQKITAADGSVNALFLSLQNKRISVRSVEKMVNKYSKLVTSLKHI 290

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK-GADRIRLGIKNSR 337
           + H +R    T         + +    G K V+   + Y     DR R   K  +
Sbjct: 291 TPHKLRSTYGTSLYRETGDIYLVADVLGHKDVNTTRKHYAAIDDDRRRSAAKYVK 345


>gi|313148284|ref|ZP_07810477.1| phage integrase [Bacteroides fragilis 3_1_12]
 gi|313137051|gb|EFR54411.1| phage integrase [Bacteroides fragilis 3_1_12]
          Length = 337

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 42/279 (15%), Positives = 86/279 (30%), Gaps = 43/279 (15%)

Query: 85  GSLAVNSRISFESYFDQI--------IRKSGDFDYRKITTKHIRSGVESRKHTPS-SAIQ 135
            +L+ N+  S+      +         ++        IT   +   ++S +   S S   
Sbjct: 25  RNLSANTLKSYRDAIRLLMPFVAKCVKKEVDKILLADITDARVVDFLDSLERNRSCSIKT 84

Query: 136 FLTSMRVLFKWAVRQEYVAIN-P--------CLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
               +  +  +A   +Y+++N P           +   K +   I    KE+M       
Sbjct: 85  RNLRLAAVCSFA---KYISVNCPEHIEWSRNIRIIPVKKTERTLITYLEKEEMNALLDAP 141

Query: 187 SEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHL-----QNNIFSIKTQKTGTIITVEL 237
            + +    +      FL  +G R  ++    ++ L     +       T K        L
Sbjct: 142 DKNTSQGWRDYALLLFLYNTGARADEAATLLIRDLSLPKRKGLAVVSITGKGNKTRRCPL 201

Query: 238 ----PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG-----VNK---S 285
                D    ++       E  F+N   Q +            A K       + K   S
Sbjct: 202 WQHTRDALSSIIKNR-TKDEYVFLNRFGQPITRFGIYEMVTRYAEKIKELIPTIKKKRVS 260

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            H +R  +AT    +G   + + A  G  +++    Y +
Sbjct: 261 PHTIRHTTATHLLQSGVDINTIRAWLGHVSINTTNIYAE 299


>gi|317055795|ref|YP_004104262.1| integrase family protein [Ruminococcus albus 7]
 gi|315448064|gb|ADU21628.1| integrase family protein [Ruminococcus albus 7]
          Length = 413

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 46/300 (15%), Positives = 93/300 (31%), Gaps = 65/300 (21%)

Query: 85  GSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRSGVES----RKHTPSSAIQFLTS 139
             L  N+  +++  +D  IR   G +  + I    + S        R    ++       
Sbjct: 83  KGLKDNTFQNYKYMYDSFIRYDFGKYKVKGIRYSDVLSFYNRLIYERGLKENTIEVIQNI 142

Query: 140 MRVLFKWAVRQEYVAINPCLS-VERPKR----KTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
           +  +   AV+  Y+  NP  + ++  K+     TE  R  T+E+   F ++ S   +   
Sbjct: 143 LHQVLDLAVQDNYLRTNPSDNALKHFKQASNFDTEKKRALTREEQDIFMNYISRNGKYHH 202

Query: 195 A---FEFLLYSGLRCSDSCRAGVQHLQNNI--------------------FSIKTQKTGT 231
               F  +L +G+R  +      + +  +                     F+I T KT  
Sbjct: 203 WYPIFYIMLNTGMRVGEITGLRWEDVDLDGEFISINHTLVYYKHKENGCYFNIHTPKTKA 262

Query: 232 II-TVELPDGF-------------MKLLAMTPIGKET--FFINNDKQKMNATQFSIWFKA 275
            + T+ + +G               ++     I   T   F+N      N    +   + 
Sbjct: 263 GVRTIPILNGVKEAFIQEEHYQREAEIECTVTIDGYTNFVFVNRFGNVHNQGTLNKAIRR 322

Query: 276 K---ATKAGVNKS-------------AHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
                 +  + KS              H +R   AT   ++G     +    G    +  
Sbjct: 323 ITRDCNEEIIAKSKGKANVTLLPRFSCHSLRHTFATRLCESGVNIKVIQDVLGHADFNTT 382


>gi|256113171|ref|ZP_05454048.1| Tyrosine recombinase xerC [Brucella melitensis bv. 3 str. Ether]
          Length = 308

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 36/239 (15%), Positives = 81/239 (33%), Gaps = 12/239 (5%)

Query: 93  ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEY 152
            SF    D+I++ +    + +     I   +  R ++ ++  + + ++  L + A +   
Sbjct: 63  RSFLGEIDEILKGARFSGFDQEMLDSIIGTLRERGNSNATINRKMAALSKLLRKAHKMGD 122

Query: 153 VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY-SGLRCSDSCR 211
           +  N    + R K +   IR   +E+ ++  +      +        L  +G R  ++  
Sbjct: 123 I-FNLPEFI-RQKERVGRIRFLEQEEEKRLFAAIKSRCEDSYRLSVFLVDTGCRLGEAIG 180

Query: 212 AGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI 271
                +Q    +    K+    TV L     K   + P  +    +      +N  +F  
Sbjct: 181 LTWNDIQEQRVTFWVTKSNRSRTVPLTRRARKASHI-PRER----LKGPFSMLNQVRFRQ 235

Query: 272 WFKAKATKAGVNKS----AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            +     +AG+        H +R   A+     G     +    G +T+     Y   A
Sbjct: 236 IWNEAKAEAGLGADDQIVPHILRHTCASRLVRGGIDIRRVQMWLGHQTLQMTMRYAHLA 294


>gi|118580278|ref|YP_901528.1| phage integrase family protein [Pelobacter propionicus DSM 2379]
 gi|118502988|gb|ABK99470.1| phage integrase family protein [Pelobacter propionicus DSM 2379]
          Length = 427

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 38/250 (15%), Positives = 78/250 (31%), Gaps = 34/250 (13%)

Query: 96  ESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYV 153
            +   +I+ + G      I  + +   ++  K    P  A + L   R +F WA+ +  +
Sbjct: 128 RALKSEIVPRWGKRKLTDIKRRDLVLVLDEIKERGAPVMANRILAYTRKMFSWALERAAL 187

Query: 154 AINPCLSVERPKRKTEGIRPWTKEDMQQF---KSFWSEGSQPRLAFEFLLYSGLRCSDSC 210
            +NP L + RP  +T   R  ++++++ F             + A + +L +G R  +  
Sbjct: 188 EVNPFLMMSRPNDETSRERVLSEKEIKTFWHNLDECKMSDSIKRALKLILVTGQRPGEII 247

Query: 211 RAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLL-------------AMTPIGKETF 255
                 +    + I     K      V L     +L+                P      
Sbjct: 248 GMHRNEIDGEWWEIPAARSKNKQAHRVFLTITAKQLIGDASGFIFESPANPAKPDETPP- 306

Query: 256 FINNDKQKMNATQFSIWFK---------AKATKAGVNK-SAHGVRKFSATISADAGATAH 305
                 +       +   K             +  V   + H +R+ +AT  A+   T  
Sbjct: 307 ---KPAKPYEVRTMTHDIKQNLPHTPHSKVIDRLKVPHFTPHDLRRTAATRWAEMEITGD 363

Query: 306 ELMATYGWKT 315
            +       T
Sbjct: 364 MIDRLQNHIT 373


>gi|312886963|ref|ZP_07746567.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
 gi|311300275|gb|EFQ77340.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
          Length = 411

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 40/265 (15%), Positives = 93/265 (35%), Gaps = 22/265 (8%)

Query: 86  SLAVNSRISFE------SYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP----SSAIQ 135
             A  +   +E        F + + K+ D   +++  + I       K       +S ++
Sbjct: 128 DFAKGTIGRYEISMQHTRDFIKWMYKADDKPIKELDHEFISQYAFWLKTVRKCNHNSTMK 187

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ---P 192
           +L + + +    V+  ++  +P  + +  K+  E     T+ ++++      +  +    
Sbjct: 188 YLANFKKVVLICVKNRWLPGDPFANFKLTKKAVEK-VALTEAELKRVIEKKFDAERLSLV 246

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVELPDGFMKLLAM 247
           R  F F  Y+GL  +D        ++          I  QKT +   + L     K+L  
Sbjct: 247 RDIFVFSCYTGLAYADVKNLKRSDIKTGIDDKEWIFINRQKTNSASHLPLLAQARKILTR 306

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSAT-ISADAGATA 304
                +    +     +   + + + K  A   G+    + H  R   AT ++ + G   
Sbjct: 307 YRDHSKCIETDAALPVLTNQKMNAYLKEIADTCGIKEELTFHIARHTFATTVTLNNGVPM 366

Query: 305 HELMATYGWKTVDQAETYTKGADRI 329
             +    G  ++ Q + Y K  +  
Sbjct: 367 ESVSKMLGHSSIRQTQHYAKMQNYK 391


>gi|229508884|ref|ZP_04398375.1| integrase [Vibrio cholerae B33]
 gi|229354159|gb|EEO19091.1| integrase [Vibrio cholerae B33]
          Length = 282

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 33/215 (15%), Positives = 61/215 (28%), Gaps = 51/215 (23%)

Query: 159 LSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH-- 216
             + RP+         T +++ +   F  EG   RL  + L  +G+R S+  +  V+   
Sbjct: 47  QEIGRPRPSRRLPVVLTPDEVVRILGFL-EGEH-RLFAQLLYGTGMRISEGLQLRVKDLD 104

Query: 217 LQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN----------------- 259
             +    ++  K      + LP+     L         +++ +                 
Sbjct: 105 FDHGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWWLKDQAEGRSGVALPDALERK 164

Query: 260 ----------------------------DKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289
                                        +  M    F   FK    +AG+ K  + H +
Sbjct: 165 YPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTL 224

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           R   AT    +G     +    G   V     YT 
Sbjct: 225 RHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTH 259


>gi|237707153|ref|ZP_04537634.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|226898363|gb|EEH84622.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|294492285|gb|ADE91041.1| site-specific recombinase, phage integrase family [Escherichia coli
           IHE3034]
 gi|307627709|gb|ADN72013.1| putative integrase [Escherichia coli UM146]
 gi|323958170|gb|EGB53879.1| phage integrase [Escherichia coli H263]
          Length = 412

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 57/367 (15%), Positives = 118/367 (32%), Gaps = 38/367 (10%)

Query: 16  TRH---GKIIYYF--RKGHGRRI---RLPYPHESTFI-----------PAYMSALTGSTP 56
            RH   G + +YF  R G GR++   RL   +                 A+++       
Sbjct: 35  VRHSTSGLLTWYFTYRAGTGRQVSPERLRLGNYPDLSLKAAREKAAQCRAWLAEGKNPRY 94

Query: 57  KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT 116
           +          P T+K  ++ + +S        +           II + G     K   
Sbjct: 95  ELNRAVQDALAPVTVKEALTYWLESYA-KEKRTDYESLKSRINKHIISQIGALPLEKCEL 153

Query: 117 KHIRSGVESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV---ERPKRKTEGIR 172
           +H  +  +   K +P SA   L   +   K+  ++ Y   N    +   +  K+     R
Sbjct: 154 RHWLACFDQMAKRSPVSAGFLLQVCKQALKYCRKRRYAISNVLDDMVVGDVGKKAEVSER 213

Query: 173 PWTKEDM-QQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT--- 226
             T +++ +  ++   +   P        L+  G R ++  R+ VQ              
Sbjct: 214 VLTNKELGELLRALDDKIFPPYYSALIRLLIVFGCRTTELRRSEVQEWDFKEMLWTVPKE 273

Query: 227 -QKTGTIITVELPDGFMKLLAMTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGVN 283
             KT   I   +P+  +  +             +   K + +  ++      +  +A   
Sbjct: 274 HSKTKVAIFRPIPESILPFVTQLVEQNRHTGLLLGELKGQSSVAEYGRTAHRRINQA--P 331

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY--TKGADRIRLGIKN-SRRIS 340
            + H +R    TI  D G   H +      +       Y  ++  D  R  +     R+ 
Sbjct: 332 WTLHDIRHTFTTILNDLGVDPHIVEQLTAHQMPGMQRVYNHSRYLDAKRDALNLWVDRLE 391

Query: 341 SVVDSDD 347
            + ++D+
Sbjct: 392 LLQNNDE 398


>gi|220905498|ref|YP_002480810.1| integrase family protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219869797|gb|ACL50132.1| integrase family protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 340

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 34/228 (14%), Positives = 82/228 (35%), Gaps = 10/228 (4%)

Query: 100 DQIIRKSGDFDYRKITTKHIRSGVESRKHT-PSSAIQFLTSMRVLFKWAVRQEYVAINPC 158
           +  +         +I+   I            ++  +++ S+ V+F++ +R E    +P 
Sbjct: 94  EHFLPVLCHSPVDQISFTDILKVAARFADKSAATQNRYMDSLHVIFRFGIRHELTTNDPM 153

Query: 159 LSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218
              ++ KR+ +     T +D+ +  +   +  +  +  E+ L +    S+      Q + 
Sbjct: 154 AHWQK-KREPQRNMLLTIKDLAKIYAAAPDHLKWIIEVEWALGTRPGKSELFSLCWQDVD 212

Query: 219 --NNIFSIKTQKT-GTIITVELPDGF-MKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274
             NN   ++  KT G+   + L   F  +LL    + +  + I  + + +        FK
Sbjct: 213 FDNNFIRVRGTKTKGSDRIIPLTPEFKARLLDKRDVAQSPYIIEVNGRGI--QHCRRAFK 270

Query: 275 AKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
               KA ++     + +R   A+     G     +    G  +     
Sbjct: 271 TALEKAKIDYPVRLYDIRHLFASTMLANGGDLKAVSKLLGHSSTRMTA 318


>gi|260424444|ref|YP_003212645.1| hypothetical protein Ctu_1p00690 [Cronobacter turicensis z3032]
 gi|260219252|emb|CBA34606.1| hypothetical protein Ctu_1p00690 [Cronobacter turicensis z3032]
          Length = 318

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 38/282 (13%), Positives = 92/282 (32%), Gaps = 33/282 (11%)

Query: 88  AVNSRISFESYFDQIIRKSG-----DFDYRKITTKHIRSGVESRKHT---PSSAIQFLTS 139
           +  SR +  S+   +    G        +  +   H++  +E    +   P++   +L++
Sbjct: 37  SAASRQTMRSFLHIVAGMLGAGALQRCPWGSLRRHHVQGLLEMLSASGRAPATINTYLSA 96

Query: 140 MRVLFKWAVRQEYVAINP-----CLSVERPKRKTEGIRPWTKEDMQQFKSFWS-----EG 189
           ++   + A   + +  +       +   R  R T G R  T E+++   +F       +G
Sbjct: 97  LKGTAREAWMMKLMDTDSYQQILAVRAVRGSRLTRG-RALTTEEVRALFAFCEQDKSCKG 155

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG-----FMKL 244
            +       +L  GLR S+      + +     +++    G    +              
Sbjct: 156 PRDAAMLAVMLGCGLRRSEVVGLDYESILEPDQALRVLGKGNKERLAFMPDTVWQRLRHW 215

Query: 245 LAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATI 296
                           +       +++           + T+ G++  + H +R+  A++
Sbjct: 216 TDTVRGEHPGPLFTRIRAGDDVTSERLTPQAVYHILTERRTQCGIDDCAPHDLRRTFASM 275

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGAD-RIRLGIKNSR 337
             D G     +    G  +V   + Y +  D R+R      R
Sbjct: 276 MLDNGEDLITVRDAMGHASVTTTQKYDRRGDARLRRAASKIR 317


>gi|261208368|ref|ZP_05923018.1| predicted protein [Enterococcus faecium TC 6]
 gi|289566839|ref|ZP_06447249.1| predicted protein [Enterococcus faecium D344SRF]
 gi|260077429|gb|EEW65148.1| predicted protein [Enterococcus faecium TC 6]
 gi|289161370|gb|EFD09260.1| predicted protein [Enterococcus faecium D344SRF]
          Length = 382

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 66/372 (17%), Positives = 127/372 (34%), Gaps = 77/372 (20%)

Query: 43  FIPAYMSALTGSTPKR----------EYINSPRKKPTTLKWLISEYRKSA-HWGSLAVNS 91
           FI  Y+   T  T K+           +  + +     +K  +  Y KS   +G L    
Sbjct: 16  FIERYVDPYTEKTRKKSTTLTSNSPQAWKKAQKILDKKIKEALENYNKSDITFGEL---Y 72

Query: 92  RISFESYFDQIIRKS----------------GDFDYRKITTKHIRSGVESR----KHTPS 131
           +  +E Y   + R S                 D   R I    I   +E        + +
Sbjct: 73  KEWYEYYKQHVKRTSFLKVPMMMKHVSKHISDDTIVRNIDETLINKIIEDMYTFGDLSLN 132

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWT-------KEDMQQFK 183
              Q  T++ V+  +A+ ++Y+  NP L+V+  PK+  E  R  +       KE++ Q  
Sbjct: 133 YTKQTKTTLSVMLNYAIDRKYIQRNPALAVKIHPKKVEEEKRRLSMDKKYLDKEEIDQIL 192

Query: 184 SFWSEGSQPRL---AFEFLLYSGLRCSDSCRAGVQHLQNNIFSI---------------- 224
                  + +L     EFL  +GLR  +     ++  ++   SI                
Sbjct: 193 KQLYSNPRRKLHGIIAEFLYLTGLRYGELLALQMKDYEDGKISINGTLDYTSVKMDNAIK 252

Query: 225 -KTQKTGTIITVELPDGFMKL---------LAMTPIG-KETFFINNDKQKMNATQFSIWF 273
              + T +   V+LP+   +L         LA  P    +  FI+     +    F+   
Sbjct: 253 TTPKNTYSQREVQLPNRAKELIESVIADNILAGRPTDPDQYIFISTSGTPLTLHSFNAIL 312

Query: 274 KA--KATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIR 330
               +  +   + S+H  R    ++ ++ G     +M   G    +     Y     R +
Sbjct: 313 HKVEEELELEKSLSSHIFRHSHVSLLSELGVPLKAIMERVGHSDANTTLSIYNHVTKRAK 372

Query: 331 LGIKNSRRISSV 342
             +    +++S+
Sbjct: 373 QQV--IDKLNSL 382


>gi|113868436|ref|YP_726925.1| phage integrase family protein [Ralstonia eutropha H16]
 gi|113527212|emb|CAJ93557.1| phage integrase family protein [Ralstonia eutropha H16]
          Length = 348

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 50/328 (15%), Positives = 102/328 (31%), Gaps = 29/328 (8%)

Query: 22  IYYFR-KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRK 80
            +    +  G   +           ++   +     +  +++    +  TL  L+  Y +
Sbjct: 10  YWRVAIRKRGYPPQARTFDTKADAESWARQVEVEMDRGSFVDRREAERNTLGDLLLRYSE 69

Query: 81  --SAHWGSLAVNSRISFESYFDQI----IRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
             S H            +   D I    I             + ++   E R  + S+  
Sbjct: 70  EISPHKKGGEQEVLRIRKLRSDPIAHYKIAALTGKVLAAYRDRRLKGDGERRPVSGSTVN 129

Query: 135 QFLTSMRVLFKWAVRQE--YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE---- 188
           + LT +  +   A ++   ++AINP  ++ RP+      R     +  +  +  S     
Sbjct: 130 RELTLISHVLNVANKEWDIHLAINPVSTIRRPRESRGRTRRLGAAEEARLFAELSASPRN 189

Query: 189 --------GSQPRLAF---EFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITV 235
                   GS+           L + +R  +        +  ++    +   K G    V
Sbjct: 190 GRGHYDKGGSRNPSILPLTILALETAMRRGELLSLRWSDVFLEDRFVRLHDSKNGESRDV 249

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSA 294
            L    +  LA  P+ +     ++     +A      F     +AG+ N   H +R    
Sbjct: 250 PLSTKAVSTLA--PLAELATSASDRVFPTSADAVKKAFTRACERAGIENFRFHDLRHEGT 307

Query: 295 TISADAGATAHELMATYGWKTVDQAETY 322
           +  A+      EL A  G KT+     Y
Sbjct: 308 SRIAERLDNVLELSAVTGHKTLQMLRRY 335


>gi|318065836|ref|YP_004123868.1| gp46 [Mycobacterium phage Wee]
 gi|315420919|gb|ADU15920.1| gp46 [Mycobacterium phage Wee]
          Length = 367

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 58/372 (15%), Positives = 120/372 (32%), Gaps = 52/372 (13%)

Query: 12  TKERTR-HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN-------- 62
            + R R HG       K +G++  L    +      +  A+     ++  +         
Sbjct: 4   IRPRKRAHGIGYAVLHKVNGQQTSLGTFDDEKEAEEFRDAVNSIGAEKAMLAWGITPTKQ 63

Query: 63  -SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIR 120
            + R    T+   +  Y  S     +   +   + SY    I    G      +T+  I 
Sbjct: 64  AARRSTAPTVSEWLERYINSR--TGVTKTTLHDYSSYLKHDIAPVLGAIPIDLLTSDDIA 121

Query: 121 SG---VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
           +    + +R+    +       +      AV    +  NP +    P+ + + +   T++
Sbjct: 122 AWVQGLAARELAGKTIANRHGFLSAALNAAVAAHEIPHNPAIGTRIPRTERKEMCFLTRD 181

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-------NIFSIKT---- 226
           +     + ++   QP + F  ++ SG R  +        +              +T    
Sbjct: 182 EFNLLLAQFAPRWQPLVRF--MVASGARFGEVSALRPADVDRTHNTVYIGRGWKRTYDGA 239

Query: 227 ------QKTGTII-TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS--IWF--KA 275
                  KT   + T+ +    +  L       E  F N   + + A  F   +W+    
Sbjct: 240 GYELGAPKTKRSVRTISVHPALLGDLD---YSGEFLFTNTVGKPLRAPGFRSNVWYPAVE 296

Query: 276 KATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLG 332
           KA  AG+ K    H +R   A+     GA  + +    G +++      YT       L 
Sbjct: 297 KACAAGLAKKPRIHDMRHTCASWMIAGGANMYAVQRHLGHESIQTTISLYTH------LD 350

Query: 333 IKNSRRISSVVD 344
             +S R + ++ 
Sbjct: 351 RSDSERAAKIIG 362


>gi|254234626|ref|ZP_04927949.1| hypothetical protein PACG_00490 [Pseudomonas aeruginosa C3719]
 gi|126166557|gb|EAZ52068.1| hypothetical protein PACG_00490 [Pseudomonas aeruginosa C3719]
          Length = 481

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 60/356 (16%), Positives = 107/356 (30%), Gaps = 64/356 (17%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87
           G G ++R P    S    A         P R   ++P   P     ++ E  +      +
Sbjct: 110 GEGGKVRGPQKPHSAPSRA-----KQEQPARLVADAPSNAPR-FSKVVQECLEQQSHEGV 163

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE-SRKHTPSSA------------- 133
           A  +     S  + + R  GD     IT +  R   E + K  P                
Sbjct: 164 AAKTLSDKRSVAELMTRIVGDLPVDLITRQDARKFREVALKLPPRMNQLPEGQSLEQIIE 223

Query: 134 -----------IQFLTSMRVLFKWAVRQEYVAINPCLS--VERPKRKTEGIRPWTKEDM- 179
                        ++ ++   F +A+R+ Y   NP     V +  + +E    +T++D+ 
Sbjct: 224 TATTTISLTTFNNYVKNLTTFFSYAIREGYCERNPFDGLRVRQRGKVSEERSVFTEDDLR 283

Query: 180 ----QQFKSFWSEGSQPRLAFEFL-LYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTG 230
               +Q  +  +     +     L LY+G R ++ C+  +  +      +   I+  K  
Sbjct: 284 RLFSKQVYASANSAQPHKYWLPLLGLYTGARLNELCQLYLDDVVSINGIDCLHIRATKPD 343

Query: 231 TII-------TVELPDGFMKLL------AMTPIGKETFF--INNDKQKMNATQFSIWFKA 275
             +        V +      L       A    G +  F  +   K    A   S WF  
Sbjct: 344 QKLKTVTSERLVPIHSKLKSLGFLEFVQAQREAGHQRLFAELTLHKAHGYAAAPSKWFTR 403

Query: 276 KATKAGV-----NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKG 325
              + G       K  H  R   A      G     +    G ++       Y K 
Sbjct: 404 VRDQLGFRDGAERKDFHSFRHTLADHLKQKGIVESLVGGILGHQSGGITFSRYGKD 459


>gi|332140068|ref|YP_004425806.1| putative integrase [Alteromonas macleodii str. 'Deep ecotype']
 gi|332143134|ref|YP_004428872.1| putative integrase [Alteromonas macleodii str. 'Deep ecotype']
 gi|327550090|gb|AEA96808.1| putative integrase [Alteromonas macleodii str. 'Deep ecotype']
 gi|327553156|gb|AEA99874.1| putative integrase [Alteromonas macleodii str. 'Deep ecotype']
          Length = 322

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 40/311 (12%), Positives = 85/311 (27%), Gaps = 59/311 (18%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
              I    +       A  +  ++ ++    IR       + +   H+ + +        
Sbjct: 3   SQFIKSLYEHMMLKRYAKRTIQTYINWISDYIRFHKFQHPKDLDVLHVEAYLTHLSTKRK 62

Query: 132 SAIQF----LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           +A       L ++  L+   + Q   +      V    R+ +     T+ +++       
Sbjct: 63  NARSTQATALNALVFLYNKYLEQPLPSD--MNFVGS-GRERKLPVVLTQLEVKALLGRVP 119

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT--QKTGTIITVELPDGFMKLL 245
             +   LA   L  SGLR  +  R     +  +   ++    K G    V L +  + LL
Sbjct: 120 --THHYLAVALLYGSGLRLMECVRLRTGDIDFDYKCVRIWFGKGGKHRVVTLSESLIPLL 177

Query: 246 AMTPIGKETFFINN---------------------------------------------- 259
                  E     +                                              
Sbjct: 178 KNHISESEKLLQRDLMVPDFAGAWIPHGLRKKYQQRNKTLEWQYLFPASKLSIDPESKLL 237

Query: 260 DKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVD 317
            +  ++  Q        ++ AG+  + + H +R   AT    +GA    +    G   V 
Sbjct: 238 RRHHIDEKQIQRAVSRASSDAGIIKHVTPHTLRHSFATHLLQSGADIRTVQDQLGHADVR 297

Query: 318 QAETYTKGADR 328
             + YT    +
Sbjct: 298 TTQIYTHILQQ 308


>gi|318606029|emb|CBY27527.1| integrase [Yersinia enterocolitica subsp. palearctica Y11]
          Length = 314

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 38/274 (13%), Positives = 76/274 (27%), Gaps = 35/274 (12%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH----- 128
           LI  + +       +++ +    +  + I +  G+     IT K      + R       
Sbjct: 22  LIDLWYQ---LHGCSLSDKKGRLAKLEIICKGLGNPIAADITPKDWAHYRDQRLRGEINN 78

Query: 129 -----------TPSSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTK 176
                      T  +       +R +F    R   +   NP +++    +    +     
Sbjct: 79  GYSTSLRTRMVTTGTVNSEQAYLRAVFNELTRLGEWSLPNPLMNIREFDQPEREMAWLND 138

Query: 177 EDMQQFKSFWSEGSQPRLAFE--FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234
           + +            P L       L +G R ++  +     +  N  +    K     T
Sbjct: 139 DQIDSLLDACDLHGNPELTLIVRLCLSTGARWNEIAKIKASQISPNKITFINTKGKKNRT 198

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKM--NATQFSIWFKAKATKAGVNKSAHGVRKF 292
           V L +   + LA               +       QF    +    +  V +  H +R  
Sbjct: 199 VPLSEDIYQALAA-----------RKGKPFEPCYKQFYRVIRLAQIELPVGQMTHVLRHT 247

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            A+    AG     L    G   +     Y+  A
Sbjct: 248 FASHFMMAGGNIIVLQRILGHSDIRVTMRYSHFA 281


>gi|255280833|ref|ZP_05345388.1| putative phage integrase/recombinase [Bryantella formatexigens DSM
           14469]
 gi|255268770|gb|EET61975.1| putative phage integrase/recombinase [Bryantella formatexigens DSM
           14469]
          Length = 280

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 37/263 (14%), Positives = 82/263 (31%), Gaps = 18/263 (6%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
           K ++ E+R        A  +   +          +   +  +I    + +  E       
Sbjct: 7   KNMLQEFRNQLKAEEKAQATIEKYMRDVSAFFAYA--KEGSEIDKYTVIAYKEYLTGH-Y 63

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP----WTKEDMQQFKSFWS 187
           +A    + +  +  +     +       +V+  K + E  R      TK +  +      
Sbjct: 64  AAASVNSMLAAVNSFLKAMGWHE----CTVKALKIQKEAFRARERDLTKGEYFRLLDAAK 119

Query: 188 EGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP--DGFMK 243
           +    RL    + L  +G+R S+     V  LQ    ++ ++     + +  P      K
Sbjct: 120 KKKNLRLYWIMQVLCATGIRVSELRYITVDALQTGCATVSSKGKQRTVLLPAPLCRKLRK 179

Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADA 300
            +    I   + F+    + ++ +      KA   +AG+       H +R   A      
Sbjct: 180 YIVCQKITGNSIFVTRSGKPVDRSNICHDMKALCGEAGICREKVFPHNLRHLFAVTYYKM 239

Query: 301 GATAHELMATYGWKTVDQAETYT 323
                 L    G  +++    YT
Sbjct: 240 KKDLSHLADLLGHASINTTRIYT 262


>gi|227522295|ref|ZP_03952344.1| phage integrase [Lactobacillus hilgardii ATCC 8290]
 gi|227090502|gb|EEI25814.1| phage integrase [Lactobacillus hilgardii ATCC 8290]
          Length = 379

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 32/329 (9%), Positives = 96/329 (29%), Gaps = 31/329 (9%)

Query: 22  IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKS 81
            YY+      R +     ++       ++      +     +   +P         +  +
Sbjct: 15  YYYYDMDGHEREKSKSGFKTKSAARLFASRVEIDYQNGLNIATGDRP--FADYFDYFYHT 72

Query: 82  AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HTPSSAIQFLTS 139
                +   ++  ++     + +  G    + +  +  +  +      H   +  +  + 
Sbjct: 73  YKEPKIKFMTQQRYKITSRVLHKYFGKTSLKNMNRQRYQQFINHYGSDHAKDTVYKVNSL 132

Query: 140 MRVLFKWAVRQEYVAINPCLSVERP--KRKTEGIRPWTKEDMQQFKSFWSEGSQP----R 193
           +R   + A+  + +  +    VE    K + + I     +++++  S+      P     
Sbjct: 133 VRAAAQNAILDDLIHKDFTQRVEIIYDKSRDKKIEYLNIDEVKRLASYLENNLNPNYTSS 192

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT---------------GTIITVELP 238
                 L +G R  +      + +  N  +I   K+               G+   + + 
Sbjct: 193 FMILTALLTGARLGEIQALTWKDINFNFKTISISKSWNYMQGGGFQDTKNEGSKRIISVN 252

Query: 239 DGFMKLLAMTPI---GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKF 292
           +  +  L +       K   F+N      +++  +   +      G+N+S    H +R  
Sbjct: 253 NNLLDDLKILKDHRKDKSMVFMNQFNTIPSSSALNKKLRQSLKDLGINRSGFHFHSLRHT 312

Query: 293 SATISADAGATAHELMATYGWKTVDQAET 321
                   G   + +    G   +     
Sbjct: 313 HVAYLLACGIDIYIISKRLGHTNISTTTR 341


>gi|30061863|ref|NP_836034.1| putative phage integrase [Shigella flexneri 2a str. 2457T]
 gi|30040107|gb|AAP15840.1| putative phage integrase [Shigella flexneri 2a str. 2457T]
          Length = 387

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 84/220 (38%), Gaps = 24/220 (10%)

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +  + ++    L+ ++ L + A  +E+  ++    ++ P+ K + IR     + Q+    
Sbjct: 139 KPASVATKATHLSFIKALLR-AAEREWKMLDKAPIIKVPQPKNKRIRWLEPHEAQRLIDE 197

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGF 241
             E  +     EF L +GLR S+      Q +         + +  K+   I V L D  
Sbjct: 198 CPEPLKS--VVEFALATGLRRSNIINLEWQQIDMQRRVAWINPEESKSNRAIGVALNDTA 255

Query: 242 MKLLAMTPIGKETFFINNDK--------------QKMNATQFSIWFKAKATKAGVNK-SA 286
            ++L    IG    ++   K              +KM     + W KA   +AG++    
Sbjct: 256 CRVLKKQ-IGNHHRWVFVYKESCTKPDGTKAPTVRKMRYDANTAW-KAALRRAGIDDFRF 313

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           H +R   A+    AG     L    GW++++    Y   A
Sbjct: 314 HDLRHTWASWLVQAGVPLSVLQEMGGWESIEMVRRYAHLA 353


>gi|109897057|ref|YP_660312.1| phage integrase [Pseudoalteromonas atlantica T6c]
 gi|109699338|gb|ABG39258.1| phage integrase [Pseudoalteromonas atlantica T6c]
          Length = 305

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 45/296 (15%), Positives = 98/296 (33%), Gaps = 41/296 (13%)

Query: 85  GSLAVNSRISFESYFDQIIRKSG---DFDYRKITTKHIRSG------VESRKHTPSSAIQ 135
           G LA NSR S +S   ++        D     +     ++       +     +  S  +
Sbjct: 12  GRLAPNSRRSIKSQLYKVAEIMEWPPDKRDEMLHQVDYQTACQIKVELIQHGSSSKSVNR 71

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR---PWTKEDMQQFKSFWSEGS-- 190
            ++++R + K  V    V  N  + +   K +        P     +    S+ ++ +  
Sbjct: 72  AMSAIRNVVKVGVIMGLVPENQLIQLSAIKLEKTSQHQGNPLNATQVNTLFSYLNKHTSI 131

Query: 191 ---QPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKLL 245
              + +  F  LL +GLR S+     ++ L        ++  K     T  LP   ++ +
Sbjct: 132 IDVRNQAIFALLLGAGLRRSELTALHLKDLILHERQLVVQKGKGNKRRTAFLPKWCVEHV 191

Query: 246 AMT-------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRK 291
                           P+ K      N    +      +  +  A + G+ N S H +R+
Sbjct: 192 YSWLLLRGDNAGYLFNPVNKTNRININRG--ITTESVYLLVRNTAKQVGLGNVSPHDLRR 249

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
              T   +     + +    G + +     Y K  +++       ++ +S +   D
Sbjct: 250 TYITRLLEQNIDLNTVRLMAGHQDISTTVVYDKRDNKV------MQKAASSLSYGD 299


>gi|110636130|ref|YP_676338.1| phage integrase [Mesorhizobium sp. BNC1]
 gi|110287114|gb|ABG65173.1| phage integrase [Chelativorans sp. BNC1]
          Length = 451

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 51/353 (14%), Positives = 97/353 (27%), Gaps = 49/353 (13%)

Query: 21  IIYYFRKGHGRR--IRLPYPHESTFIPAYMSALTGSTPKREYINSPR---KKPTTLKWLI 75
           +I Y   G  RR  I L     +        A  G   + E  +  R    K  T+K L 
Sbjct: 42  LIQYRAAGRTRRFTIGLHGIWTAENARQEAKAQLGRVARGENPSEERQLDHKAITVKELC 101

Query: 76  SEYRKSAHW--------GSLAVNSR-ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
           + Y    +               +           II   G    + +    +   ++  
Sbjct: 102 TLYLNDMNAGLIMGKGGRPKKPTTIVTDTGRINRHIIPLLGARRVKDLAKADVNKLLKDV 161

Query: 127 --------------------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
                               +    +A + ++ +  +  +AV    +  NP   +++PK 
Sbjct: 162 MAGKTRVSVKTDKLRGKAIVRGGAGTAARTVSLLGGILTYAVDAGIIDRNPAHGIKKPKD 221

Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQPRL------AFEFLLYSGLRCSDSCRAGVQHLQNN 220
                R  +  + +       E ++             +  +G R S+        +  +
Sbjct: 222 NVRKRR-LSDAEYRILGVMLREAAEDEKYAMTVEIIRQIAMTGCRRSEIISLTWNEVDTD 280

Query: 221 I--FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI----NNDKQKMNATQFSIWFK 274
                +   K G             L A       T+      ++D    +         
Sbjct: 281 ASCLRLTDSKEGASTRPIGLPVIEFLEAQKKKATATYVFPGTRSDDGAFGSFPNHWKQMF 340

Query: 275 AKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
             +  AGV  + H +R   A+I+ D G T   + A  G         Y    D
Sbjct: 341 KDSPLAGV--TPHVLRHSFASIANDLGFTEVSIAALVGHSKGTVTSKYIHTLD 391


>gi|331088577|ref|ZP_08337488.1| transposase [Lachnospiraceae bacterium 3_1_46FAA]
 gi|330407534|gb|EGG87034.1| transposase [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 397

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 62/377 (16%), Positives = 109/377 (28%), Gaps = 59/377 (15%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
            ++ K     G   Y +          P P      P+            E       K 
Sbjct: 24  KYLYKYVDAFGNTKYVYAWRLTP--TDPTPKGKREKPSLRELEQQIRRDIEDGIDSTGKK 81

Query: 69  TTLKWLISEY-RKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRSGVESR 126
            T   L   Y +++A   ++  ++    E     +   K G      I     +      
Sbjct: 82  MT---LCQLYAKQNAQRANVKKSTMKQREQLMRLLKEDKLGARSIDTIKPSDAKEWAVRM 138

Query: 127 KHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPC--LSVERPKRKTEGIRPWTKEDMQQ 181
           K      ++      S++  F  A++ + V  NP      E  +  T+     T+E  Q 
Sbjct: 139 KDKGFSYNTINNHKRSLKASFYIAIQDDCVRKNPFDFKLSEVLENDTKEKVALTEEQEQA 198

Query: 182 FKSFWSEGSQPRLAFE---FLLYSGLRCSDSCRAGVQHLQ----------------NNIF 222
             SF    +     ++    LL +GLR S+ C   V  +                    +
Sbjct: 199 LLSFIKTDNVYHKYYDDVLILLKTGLRISELCGLTVADIDFKNEVVIIDHQLLKSKEQGY 258

Query: 223 SIKTQKTGTIIT-VELPDG----FMKLLAMTPIG--------KETFFINNDKQKMNATQF 269
            I+T KT + I  V L       F +++   P              F+N+  +   A  +
Sbjct: 259 YIETPKTKSGIRQVPLSRETIQAFQRVMKKRPKAEPFVIDGRGNFLFVNHKDKPKVAIDY 318

Query: 270 SIWFKAKATKAGVNK--------SAHGVRKFSATISADAGATAHELMATYGWKTVD---- 317
           +  F     K   +         + H +R    T  A       +L    G   +     
Sbjct: 319 NALFVRMVKKYNKHHKDNPLPHITPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISITMN 378

Query: 318 ---QAETYTKGADRIRL 331
               A   T  ++  RL
Sbjct: 379 WYAHASIDTAKSEVQRL 395


>gi|295133368|ref|YP_003584044.1| transposase [Zunongwangia profunda SM-A87]
 gi|294981383|gb|ADF51848.1| putative transposase [Zunongwangia profunda SM-A87]
          Length = 400

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 44/285 (15%), Positives = 98/285 (34%), Gaps = 26/285 (9%)

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVES 125
           KP T+K   +  +    +    +N+   +    + + I     F       ++ +     
Sbjct: 126 KPGTMKNYYTTEKYVLEFLEKKINTNDIYLKQINYRFITDFEHF------LRNYKPKTHR 179

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
            K T +  ++ L  ++ L   A++ E++  +P         K +      ++++   ++ 
Sbjct: 180 SKPTNNGVMKHLERLKKLTNLALKMEWIDKDPFSKY-SLHYKKKERDYLLQDEIDILENL 238

Query: 186 WSEG---SQPRLAFEFLLYSGLRCSDSCRAGVQHL-----QNNIFSIKTQKTGTIITVEL 237
             +    S+ R  F F  YSGL   D+     +H+      N     + +KTG +  V +
Sbjct: 239 NLDRITLSRTRDVFLFSCYSGLSYGDAKSLEAKHIVTGIDGNKWIVKEREKTGKLFKVAM 298

Query: 238 PDGFMKLLAMTPIGK--ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFS 293
                 +L             +     +          K  A  A ++K  + H  R   
Sbjct: 299 LPKVKAILKKYEKEANISGLLLPVYSNQKTNQYL----KDLAKLAKISKKLTFHVARHTF 354

Query: 294 AT-ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
           AT ++   G     +    G   +   + Y++  D+ +L     +
Sbjct: 355 ATTVTLSKGIPIETVSKLLGHTKLSTTQIYSRVLDQ-KLSDDMRK 398


>gi|283455528|ref|YP_003360092.1| phage integrase [Bifidobacterium dentium Bd1]
 gi|283102162|gb|ADB09268.1| Phage integrase [Bifidobacterium dentium Bd1]
          Length = 244

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 29/218 (13%), Positives = 63/218 (28%), Gaps = 7/218 (3%)

Query: 109 FDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168
                +T       +     +  +      ++   F W V  +  + NP + +  P    
Sbjct: 13  KPPENVTRADCEKWMGREGLSAETRKGIRATLTSYFDWCVDHDLRSDNPAIGL--PHVAG 70

Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL---QNNIFSIK 225
               P    +    ++      + RL        GLR S+  +   + +    +N     
Sbjct: 71  SKPHPRPCPETGIREAMDGLSERDRLMVRLGAELGLRRSEIAKVSGRDVVGPADNALLRV 130

Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS 285
             K      + LP      + +   G    F + +   ++        K   +    +  
Sbjct: 131 VGKGDKQRLIPLPQDLA--VRIRQTGDGWLFPSRNDHGISHLTAGRVGKIVGSALPQSYG 188

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
            H +R  +AT +  A      +    G  +V   + Y 
Sbjct: 189 THSLRHRAATQAYLATHDLLAVSTLLGHSSVATTQRYV 226


>gi|260642635|ref|ZP_05416696.2| integrase [Bacteroides finegoldii DSM 17565]
 gi|260621236|gb|EEX44107.1| integrase [Bacteroides finegoldii DSM 17565]
          Length = 406

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 45/288 (15%), Positives = 86/288 (29%), Gaps = 30/288 (10%)

Query: 66  KKPTTLKWLISEYRKSAHWG-------SLAVNSRISFESYFDQIIRKSGDFDY-----RK 113
           K  TT      +Y +            +L      +   + + +  K G  D        
Sbjct: 104 KVKTTFVEFYDKYLEDIKAQVGAGKSIALYHKYSAARSHFVNFLHAKYGRKDLMPGELTH 163

Query: 114 ITTKHIRSGVESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
           +        +++      +SA + L   + +  +A +   +  +P L+      +     
Sbjct: 164 LIIHDFEIYLKTVVSLKSNSATKTLKFFKTVVIFAQKCGVMTHDPFLN-HHFHLEPVDRG 222

Query: 173 PWTKEDMQQFKSFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIK 225
             T E++Q+              R  F F  + GL   D      +++          I 
Sbjct: 223 FLTDEEIQRIMQKDFEIPRLEMVRDVFIFSCFCGLAYIDVAHLTQENIITLDNRPWIIIN 282

Query: 226 TQKTGTIITVELPDGFMKLLAM--TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
            QKT     + L +    +L                  QK+NA     + K  A   G+ 
Sbjct: 283 RQKTNVQSNIPLLEIPQMILDKYKGKTKDNRLLPVLSNQKINA-----YLKEIADLCGIK 337

Query: 284 K--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           K  S H  R   AT+    G     +    G   +   + Y +  ++ 
Sbjct: 338 KRLSYHLARHTFATMLLSKGVPIESVSKMLGHTNIKTTQIYARITNKK 385


>gi|156936639|ref|YP_001440553.1| hypothetical protein ESA_pESA3p05520 [Cronobacter sakazakii ATCC
           BAA-894]
 gi|156534893|gb|ABU79717.1| hypothetical protein ESA_pESA3p05520 [Cronobacter sakazakii ATCC
           BAA-894]
          Length = 325

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 36/282 (12%), Positives = 89/282 (31%), Gaps = 33/282 (11%)

Query: 88  AVNSRISFESYFDQIIRKSG-----DFDYRKITTKHIRSGVESRKHT---PSSAIQFLTS 139
           +  SR +  S+   +    G        +  +   H++  +E    +   P++   +L++
Sbjct: 44  SAASRQTMRSFLHIVAGMLGARALQHCPWGSLRRHHVQGLLEMLSASGRAPATINTYLSA 103

Query: 140 MRVLFKWAVRQEYVAINP-----CLSVERPKRKTEGIRPWTKEDMQQFKSFWS-----EG 189
           ++   + A   + +  +       +   R  R T G R  T E+++   S        +G
Sbjct: 104 LKGTAREAWMMKLMDTDSYQQILAVRAVRGSRLTRG-RALTPEEVRALFSLCEQDKSCKG 162

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG-----FMKL 244
            +       +L  GLR S+        +     +++    G    +              
Sbjct: 163 PRDAAMLAVMLGCGLRRSEVVGLDYASILEQDQALRVLGKGNKERLAFMPDTVWQRLRHW 222

Query: 245 LAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATI 296
                           +       +++           +  + G++  + H +R+  A++
Sbjct: 223 TDSVRGEYPGPLFTRIRAGDDVTSERLTPQAVYHILNERRMQCGIDNCAPHDLRRTFASM 282

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGAD-RIRLGIKNSR 337
             D G     +    G  +V   + Y +  D R+R      +
Sbjct: 283 MLDNGEDLITVRDAMGHASVTTTQKYDRRGDARLRRAAGKIK 324


>gi|153831894|ref|ZP_01984561.1| IntI [Vibrio harveyi HY01]
 gi|148871892|gb|EDL70715.1| IntI [Vibrio harveyi HY01]
          Length = 320

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 66/213 (30%), Gaps = 52/213 (24%)

Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225
            + +     T+ ++++F        + +L  + L  SGLR  +  R  +Q +  +  +++
Sbjct: 98  TEKKLPVVLTRNEVRRFVQHIDP--KYKLHIQLLYGSGLRIMECLRLRIQDIDYDYGALR 155

Query: 226 --TQKTGTIITVELPDGFMKLLAMT----------------------------------- 248
               K G   TV L     + L                                      
Sbjct: 156 VWQGKGGKNRTVTLAKELHEPLKAQVNLTRDYYQKDRHMGGYAGVYISDGLRRKYPGAEL 215

Query: 249 --------PIGKETFFINN---DKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSAT 295
                   P  K +   +     +  +N +      K  A  AG+ KS   H +R   AT
Sbjct: 216 DFNWHFLFPSTKLSIDADTGEFRRHHVNESAIQRAVKRAAKDAGIEKSVTCHTLRHSFAT 275

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADR 328
              ++GA    +    G   V   + YT   +R
Sbjct: 276 HLLESGADIRTVQEQLGHTDVKTTQIYTHVIER 308


>gi|122891785|ref|YP_001004330.1| integrase [Staphylococcus phage phiETA3]
 gi|121309264|dbj|BAF43885.1| integrase [Staphylococcus phage phiETA3]
          Length = 349

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 45/291 (15%), Positives = 95/291 (32%), Gaps = 39/291 (13%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFES-YFDQIIRKSGDFDYRKITT---KHIRSGVES 125
           T  ++   Y +++    L   ++   ++ Y      K G     KIT    +  R  +  
Sbjct: 59  TFDYVFHYYLENS---DLRPKTKRRKQNEYHKHFKAKFGHIKMNKITQNQCQEFRKYLIE 115

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
              + +SA    +  +V+  +A +   +  +P +S++   R     +   +E+ ++ +  
Sbjct: 116 NVASTNSARTIWSGFKVVINYAKKYFGLRTDPTISIKPIPRVKPKPKFMMREEFEE-RIK 174

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH---------------LQNNIFSIKTQKTG 230
             E    R  F  + Y+GLR  ++                      + N     + +   
Sbjct: 175 DIEEQDYRELFTLMFYTGLRIGEAMALVWTDYNKYKKEISINKTMDISNRTIYPRPKTDS 234

Query: 231 TIITVELPD----------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280
           +   V LP              K L      +  F        M    +S   K    KA
Sbjct: 235 SEDIVPLPKFINTMLTERHQREKELNKYFDERSYFIF----GGMAPKHYSHVQKKF-QKA 289

Query: 281 GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIR 330
             + + H +R   A+  A+ G     L +      + +   TY+    + +
Sbjct: 290 FPHYNIHALRHSYASYLANNGVDIFVLQSLMRHAQITETMGTYSHLYTQKK 340


>gi|117624733|ref|YP_853646.1| integrase-like protein [Escherichia coli APEC O1]
 gi|115513857|gb|ABJ01932.1| integrase-like protein [Escherichia coli APEC O1]
          Length = 418

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 52/359 (14%), Positives = 122/359 (33%), Gaps = 39/359 (10%)

Query: 22  IYYFRKGHGRRIRLPYPHE----------STFIPAYMSALTGSTPKREYINSPRKKPT-- 69
            Y +R    R   +   +              I A      G +P     +  +K     
Sbjct: 38  RYDYRINGRRETLVIGQYGRDGISLAEAREELIAAKKLLKAGQSPAAAKRDGIKKIRGAE 97

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVES--R 126
           T       Y K      LA ++R   ++  D+ I+   G+    +ITT  +R   +    
Sbjct: 98  TFAVHTDSYMKHVI---LADSTRAMKQAVIDRDILPVLGNKMMAEITTSMVRDLCDRIVE 154

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE--RPKRKTEGIRPWTKEDMQQF-K 183
           +   ++A+Q    +  +++ A  + +   NP   ++           R  T E++  F +
Sbjct: 155 RGGRATAVQAREIISSVYRHANDRGHGLFNPAADIKPSSIAIFKPRERTLTPEEIGLFFR 214

Query: 184 SFWSEGSQ--PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIITVEL 237
           +  + G+    ++A + +L + +R  +   A    +    ++        K      + L
Sbjct: 215 TLDAIGAMGTMKMALKLVLITMVRKGEFTNATWDEIDFKKWTWTIPSDRMKGSRAHVIYL 274

Query: 238 PDGFMKLLAMTP--IGKETFFI---NNDKQKMNATQFSIWFKAKATKAGVNK------SA 286
           P     +L       G   + +    N ++ ++    +            +       + 
Sbjct: 275 PKQAQDILVGLQMCAGGSEYLVPGRYNFRKPLSNAALNSLIDRTVKIINEDGEHIQDFTV 334

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345
           H +R+ ++T+  +AG  +  +      +       Y K A+  R      ++ + ++DS
Sbjct: 335 HDMRRTASTLLHEAGYPSDWIEKALAHEQKGVRAVYNK-AEYARQRAYMLQQWADMIDS 392


>gi|148267282|ref|YP_001246225.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           JH9]
 gi|150393332|ref|YP_001316007.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           JH1]
 gi|257794856|ref|ZP_05643835.1| phage integrase [Staphylococcus aureus A9781]
 gi|258418172|ref|ZP_05682437.1| phage integrase [Staphylococcus aureus A9763]
 gi|258421469|ref|ZP_05684394.1| phage integrase [Staphylococcus aureus A9719]
 gi|258448948|ref|ZP_05697057.1| phage integrase [Staphylococcus aureus A6224]
 gi|258453926|ref|ZP_05701898.1| phage integrase [Staphylococcus aureus A5937]
 gi|282929257|ref|ZP_06336830.1| integrase [Staphylococcus aureus A10102]
 gi|295406551|ref|ZP_06816357.1| integrase [Staphylococcus aureus A8819]
 gi|297245277|ref|ZP_06929151.1| integrase [Staphylococcus aureus A8796]
 gi|147740351|gb|ABQ48649.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           JH9]
 gi|149945784|gb|ABR51720.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           JH1]
 gi|257788828|gb|EEV27168.1| phage integrase [Staphylococcus aureus A9781]
 gi|257838965|gb|EEV63444.1| phage integrase [Staphylococcus aureus A9763]
 gi|257842395|gb|EEV66819.1| phage integrase [Staphylococcus aureus A9719]
 gi|257857844|gb|EEV80736.1| phage integrase [Staphylococcus aureus A6224]
 gi|257863791|gb|EEV86547.1| phage integrase [Staphylococcus aureus A5937]
 gi|282589133|gb|EFB94231.1| integrase [Staphylococcus aureus A10102]
 gi|285816526|gb|ADC37013.1| Integrase [Staphylococcus aureus 04-02981]
 gi|294968696|gb|EFG44719.1| integrase [Staphylococcus aureus A8819]
 gi|297177948|gb|EFH37197.1| integrase [Staphylococcus aureus A8796]
 gi|315128960|gb|EFT84957.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           CGS03]
          Length = 349

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 45/291 (15%), Positives = 95/291 (32%), Gaps = 39/291 (13%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFES-YFDQIIRKSGDFDYRKITT---KHIRSGVES 125
           T  ++   Y +++    L   ++   ++ Y      K G     KIT    +  R  +  
Sbjct: 59  TFDYVFHHYLENS---DLRPKTKRRKQNEYHKHFKAKFGHIKMNKITQNQCQEFRKYLIE 115

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
              + +SA    +  +V+  +A +   +  +P +S++   R     +   +E+ ++ +  
Sbjct: 116 NVASTNSARTIWSGFKVVINYAKKYFGLRTDPTISIKPIPRVKPKPKFMMREEFEE-RIK 174

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH---------------LQNNIFSIKTQKTG 230
             E    R  F  + Y+GLR  ++                      + N     + +   
Sbjct: 175 DIEEQDYRELFTLMFYTGLRIGEAMALVWTDYNKYKKEISINKTMDISNRTIFPRPKTDS 234

Query: 231 TIITVELPD----------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280
           +   V LP              K L      +  F        M    +S   K    KA
Sbjct: 235 SEDIVPLPKFINTMLTERHQREKELNKYFDERSYFIF----GGMAPKHYSHVQKKF-QKA 289

Query: 281 GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIR 330
             + + H +R   A+  A+ G     L +      + +   TY+    + +
Sbjct: 290 FPHYNIHALRHSYASYLANNGVDIFVLQSLMRHAQITETMGTYSHLYTQKK 340


>gi|323962209|gb|EGB57801.1| phage integrase [Escherichia coli H489]
          Length = 264

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 37/233 (15%), Positives = 73/233 (31%), Gaps = 46/233 (19%)

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196
           +T++  +F++ V   Y+A NP   +   K       P ++E+  +         Q +  +
Sbjct: 1   MTNLNAVFQFGVDNGYLADNPFKGISPLKESRTIPDPLSREEFIRLIDAC-RNQQAKNLW 59

Query: 197 EFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK-------------TQKTGTIITV--ELPD 239
              +Y+G+R  + C  G + +   N    I+                T  +I +     D
Sbjct: 60  CVSVYTGIRPGELCALGWEDIDLKNGTMMIRRNLAKDRFTVPKTQAGTNRVIHLIKPAID 119

Query: 240 GFMKLLAMTPIGKETFF--------------------------INNDKQKMNATQFSIWF 273
                + +T + KE                             + N             +
Sbjct: 120 ALRSQMTLTRLSKEHIIDVHLREYGRTEKQKCTFVFQPEVSARVKNYGDHFTVDSIRQMW 179

Query: 274 KAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
            A   +AG+ ++ ++  R   A  S  AGA    +    G        + Y K
Sbjct: 180 DAAIKRAGLRHRKSYQSRHTYACWSLTAGANPAFIANQMGHADAQMVFQVYGK 232


>gi|307276548|ref|ZP_07557666.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX2134]
 gi|306506658|gb|EFM75810.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX2134]
          Length = 349

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 33/276 (11%), Positives = 88/276 (31%), Gaps = 26/276 (9%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
           ++ TT       +        +   +  +++     + +  GD   + +    ++  ++ 
Sbjct: 55  ERTTTFADFFENWIHIIKKNDVKETTFQNYQRTSQVVKKLFGDIQLKDLNDIVVQRKIDK 114

Query: 126 RKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQQF 182
              T    +  + L  ++   + A  + Y+A +    V+ R K   +  R  +  ++++ 
Sbjct: 115 YAETHSRKTTHEVLLKIKTALRDAYARGYLATDFANLVKTRGKVLDKRNRALSITELKKL 174

Query: 183 KSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ----------KTG 230
           +++     +    +     L +G+R  +      + L      ++            KT 
Sbjct: 175 RTYVINHQENEFNILVLLALETGMRRGELLGMRPEDLFEYGVHVRRSLSPTSEDTSLKTK 234

Query: 231 -TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKA--TKAGVNK-SA 286
            +   + +      +L   PI    +F        +   F    K      K  + K + 
Sbjct: 235 NSRRDISINQEVYDILKSVPIKDNGYF-------FDPDGFQQSAKLARLLKKLDIPKTTF 287

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           HG+R   A+           +    G   +   + Y
Sbjct: 288 HGLRDTHASFLFSQDIDIAYVSKRLGHINIQTTQNY 323


>gi|304398639|ref|ZP_07380511.1| integrase family protein [Pantoea sp. aB]
 gi|304353850|gb|EFM18225.1| integrase family protein [Pantoea sp. aB]
          Length = 400

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 53/340 (15%), Positives = 109/340 (32%), Gaps = 35/340 (10%)

Query: 19  GKIIYYFR---KGHGRRIRLPYPHESTFI--------PAYMSALT-GSTPKREYINSPRK 66
           GK ++ FR        R  L                   Y+S L  G  P+++      +
Sbjct: 39  GKKLWRFRYQRPNSSSRTNLSLGSYPALTLAVARQMRDQYLSLLAQGIDPQKQQEEVSEQ 98

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNS------RISFESYFDQIIRKSGDFDYRKITTKHIR 120
           +   L  + S    +  W  L   S      +  + S    I    G+   + +  + I 
Sbjct: 99  RQIELDSIFS--VVAGRWFQLKSKSVTEDYAKDIWRSLEKDIFPSIGEIPVQALKARTIV 156

Query: 121 SGVESRKHTPS--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP--KRKTEGIRPWTK 176
             +E  K   +  +  + +  +  +  +AV    +  NP   V     K K + +     
Sbjct: 157 EALEPIKARGALETVRRLVQRINEIMIYAVNTGLIDANPASGVGMAFEKPKKQNMPTLRP 216

Query: 177 EDMQQFKSFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI----KTQKT 229
           E++ +        +     R   E+ L + +R S++  A    +  +        K  K 
Sbjct: 217 EELPKLMRSLVMSNLSVTTRCLIEWQLLTLVRPSEASGALWAEIDRDAKIWTIPAKRMKA 276

Query: 230 GTIITVELPDGFMKLLAM---TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA 286
                + L    +++L +       +E  F + +  K      +     K    G    A
Sbjct: 277 KREHIIPLSPQALEILDVMEPISAHREHIFPSRNDPKRAMNSQTANAALKRIGFGGKLVA 336

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAET-YTKG 325
           HG+R  ++T   +AG     + +       ++    Y + 
Sbjct: 337 HGLRSIASTAMNEAGLNPDVIESALAHTDKNEVRRAYNRS 376


>gi|296876474|ref|ZP_06900525.1| phage integrase family site-specific recombinase [Streptococcus
           parasanguinis ATCC 15912]
 gi|296432467|gb|EFH18263.1| phage integrase family site-specific recombinase [Streptococcus
           parasanguinis ATCC 15912]
          Length = 403

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 63/398 (15%), Positives = 127/398 (31%), Gaps = 64/398 (16%)

Query: 8   PPFVTKERTRHGKIIYYFR------KGHGRRIRLP----------YPHESTFIP------ 45
             +    R + GKI Y          G  +R R+              +  F        
Sbjct: 3   KKYKCVSRNKKGKIYYEVEFSVDPSTGDRKRFRVKSYKDQFGIDFKTEKQAFDEVCRIRT 62

Query: 46  AYMSALTGSTPKREYINSPRKKPTTLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIR 104
            Y + +  ++ KR  ++ P          + + Y          V  + ++  Y    I 
Sbjct: 63  EYNAKIASASTKRPQLDIP------FSKFMEDVYLPYYKKTVQPVTYQTAYPQY-KTFIE 115

Query: 105 KSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162
              D    +I  +       S    ++P+ A      ++    +A R EY+  NPC  ++
Sbjct: 116 VFADKKLSEINVRECEDFRLSLMEDYSPNYAKGLWCKLKKCLNYAERLEYIENNPCRKLD 175

Query: 163 RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY----SGLRCSDSCRAGVQHLQ 218
            PK +      WT E++ +    + +       F   ++    +G+R S+        + 
Sbjct: 176 NPKGEKPKTEFWTVEELDKVLKTFDQTVYEERQFYTAIWLYFMTGMRVSEGLSLKWSDID 235

Query: 219 ---------------NNIFSIKTQKTGTII---TVELPDGFMKLLAMTPI-----GKETF 255
                           N   ++ ++T T      +E+ D  +K+L           ++ F
Sbjct: 236 LKNKVIHIQSTLEYQGNGKYVRKEQTKTRAGMRFLEIDDETVKVLQNWRTVQVYNREDNF 295

Query: 256 FINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG-ATAHELMATYGW 313
            +      MN +  S   K  A  A V   +  G+R    +   +        + A  G 
Sbjct: 296 VLARFNSPMNKSTLSRMLKRHALVAKVPVITGKGLRHSHDSFMINVLKKDVLYVSARSGR 355

Query: 314 KTVDQA-ETYTKGADRIRL--GIKNSRRISSVVDSDDP 348
                   TY+   DR  +  G + +  +  +  + +P
Sbjct: 356 TDKATTLNTYSHFYDRQVVTGGAEITEALGELGLTANP 393


>gi|294630761|ref|ZP_06709321.1| traSA:integrase fusion protein [Streptomyces sp. e14]
 gi|292834094|gb|EFF92443.1| traSA:integrase fusion protein [Streptomyces sp. e14]
          Length = 437

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 58/366 (15%), Positives = 103/366 (28%), Gaps = 64/366 (17%)

Query: 18  HG-KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76
           HG    +  R       +      +       +A      +R     P +   TL     
Sbjct: 33  HGIGKRWQVRYRDLDGHQRKENFHTKAEADNRAAEVDVEIRRGSYVVPAETKQTLGAYAQ 92

Query: 77  EYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKH-IRSGVESRKHT---PS 131
           ++       S+   + + +E+   + I    G  + R +     I+  + + K      S
Sbjct: 93  KWL---DANSVGPTTALRYEATVRNHIAEHLGRRELRSLNQPSVIQGWIRTLKDGGLEVS 149

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLS--VERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
           +       +  +   AV    +  NPC +  V+ P    + I PW  E ++   +   + 
Sbjct: 150 TIEGIFDILSSILGAAVEDGLLPKNPCKAKSVKLPTATKKKIIPWPLERVRAVLAGLPKR 209

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ-------------KTGTIIT 234
            Q     +     GLR  +     V+ +        +  Q             K   I +
Sbjct: 210 FQAGG--KLAFGCGLRQGEVFGFAVEDIDFKTGWIHVNRQVRLVGTKPVFALPKGNKIRS 267

Query: 235 VELPDGFMKLLAM-------------------TPIGKETFFINNDKQKMNATQF--SIWF 273
           V LP      L                      P      F++   +  N + F    W 
Sbjct: 268 VPLPAQLAAALKAHMKEFPPVEVTLPWTKPDGEPKTFRLLFVDAKGRAYNRSVFNMGDWK 327

Query: 274 KAKATK--------------AGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVD-Q 318
           +A A                A      H +R   A++  DAG +   L    G       
Sbjct: 328 RALAAAGVIPPRERGARYLQAAPEDGMHALRHAYASVLMDAGESIKALSEYLGHSDPGFT 387

Query: 319 AETYTK 324
             TYT 
Sbjct: 388 LRTYTH 393


>gi|226325969|ref|ZP_03801487.1| hypothetical protein COPCOM_03782 [Coprococcus comes ATCC 27758]
 gi|225205511|gb|EEG87865.1| hypothetical protein COPCOM_03782 [Coprococcus comes ATCC 27758]
          Length = 373

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 45/307 (14%), Positives = 99/307 (32%), Gaps = 41/307 (13%)

Query: 57  KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKIT 115
           K E+    +K+  TL      + +      + + +  S+E Y+   I  + G+ +  +I 
Sbjct: 52  KLEHGLYVKKEKITLMEWYETWLEEYKKNRVKIGTYTSYEKYYKSTINNRLGNKELSEIR 111

Query: 116 TKHIRSGVESRKHTPSSAIQFLTSMRVLFK----WAVRQEYVAINPCLSVERPKRKT--E 169
            +HI+            AI  +  +  +       A++   +  NP    E P++    +
Sbjct: 112 GEHIQKLYNDM-VKEGYAISSIKIVSAILNGCLQQAMKNGLIERNPVKLAELPRQTGTKK 170

Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKT- 226
                TKE    F  +  E S     F  +L +G+R  +        +    N+  ++  
Sbjct: 171 ERTAMTKEQQDLFMKYAEE-SYLYHFFSVMLRTGMRKGEMQGLKYSDIDKKQNVIHVRRT 229

Query: 227 ----QKTG----------TIITVELPDGFMKLLAMTP--------IGKETFFINNDKQKM 264
               +  G          +   + L     + +               +  F N +   +
Sbjct: 230 LKYIEGKGYFEDTPKTRTSTRDIPLTAAITEHIEAQRKYWGFKVVRMDQYLFCNENGDPI 289

Query: 265 NATQFS---IWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           +  +          +    G +    ++H  R   AT + +AG     L    G  ++  
Sbjct: 290 SRERIQGEIDRIIKRIKSDGYDFPRITSHVFRHTFATRAIEAGMPPQVLKTILGHSSLAM 349

Query: 319 A-ETYTK 324
             + Y+ 
Sbjct: 350 TMDLYSH 356


>gi|154267925|gb|ABS72060.1| integrase-like protein [Ruminococcus gauvreauii]
          Length = 278

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 33/262 (12%), Positives = 75/262 (28%), Gaps = 19/262 (7%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
           I  + +S +    +  +   +     ++       +  K      R  +   +    +  
Sbjct: 9   IQAFEESLYLNEKSKATVSKYLRTVRKLAEYLQGKELTKPRLLEYREIL-QNQVKAQTVN 67

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI----RPWTKEDMQQFKSFWSEGS 190
             L+S+    ++     +        ++  K + +      R  ++ + +Q  +      
Sbjct: 68  GTLSSINAFLEFC---GWQD----CKIKLLKVQRKAFLDETRELSEAEYKQLLAAAQAKG 120

Query: 191 QPRLAFEFL--LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV--ELPDGFMKLLA 246
             RL    L    +G+R S+     V+  Q     I  +     + +  EL    +K   
Sbjct: 121 NERLYLVMLTICGTGIRVSELQHITVEAAQTGRAEICMKGKNRTVLLQKELRVRLLKYAK 180

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGAT 303
              I +   F     + ++ T      K     A V+      H +R   A         
Sbjct: 181 ELGIDEGHIFRTRSGKPLDRTNICHDMKKLCASAKVDPRKVFPHNLRHLFARSFYAIEKN 240

Query: 304 AHELMATYGWKTVDQAETYTKG 325
              L    G   ++    Y   
Sbjct: 241 LAHLADILGHSRIETTRIYVAA 262


>gi|160931503|ref|ZP_02078899.1| hypothetical protein CLOLEP_00336 [Clostridium leptum DSM 753]
 gi|160934558|ref|ZP_02081944.1| hypothetical protein CLOLEP_03431 [Clostridium leptum DSM 753]
 gi|311063707|ref|YP_003970432.1| DNA integration/recombination/inversion protein [Bifidobacterium
           bifidum PRL2010]
 gi|156866011|gb|EDO59383.1| hypothetical protein CLOLEP_03431 [Clostridium leptum DSM 753]
 gi|156869568|gb|EDO62940.1| hypothetical protein CLOLEP_00336 [Clostridium leptum DSM 753]
 gi|310866026|gb|ADP35395.1| DNA integration/recombination/inversion protein [Bifidobacterium
           bifidum PRL2010]
          Length = 397

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 51/284 (17%), Positives = 86/284 (30%), Gaps = 46/284 (16%)

Query: 85  GSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSM 140
           G++  N++   +     +   K G      +     +      K       +      S+
Sbjct: 96  GNVRYNTKNGRKRLMKLLEEDKLGGCPIDSVKLSDAKEWAIRMKEKGISYKTISNDKRSL 155

Query: 141 RVLFKWAVRQEYVAINPC--LSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLA 195
           +  F  A++ + +  NP         +  TE   P T    + F SF        +    
Sbjct: 156 KAAFYTAIQDDCIRKNPFDFQLNTVIEDDTEPKVPLTPAQEESFLSFAQNDKVYQKYYDE 215

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQ-NNIF---------------SIKTQKTGTIIT-VEL- 237
              LL +GLR S+ C      +   N                  I+T KT + I  + + 
Sbjct: 216 LIILLGTGLRISELCGLTDTDINFENRIINVDHQLLRSAETGYYIETPKTKSGIRQIPMS 275

Query: 238 ----------PDGFMKLLAMTPIGKETF-FINNDKQKMNATQFSIWFKAKAT------KA 280
                             A+T  G   F F+N D     AT +   F+  A       + 
Sbjct: 276 EKVYEAFNRVLKRRRGAKAVTIDGYSNFLFLNRDGYPKTATNYDGMFRGLAKKYNKYHEE 335

Query: 281 GVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
            + K  + H +R    T  A+AG     L    G   +     Y
Sbjct: 336 ALPKVMTPHTLRHTFCTNMANAGMNPKALQYIMGHSNITMTLNY 379


>gi|89885989|ref|YP_516186.1| putative phage integrase [Sodalis phage phiSG1]
 gi|89191724|dbj|BAE80471.1| putative phage integrase [Sodalis phage phiSG1]
          Length = 351

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 53/343 (15%), Positives = 99/343 (28%), Gaps = 44/343 (12%)

Query: 14  ERTRHGKIIYYFR---KGHGRRIRLPYPHE---STFIPA---YMSALTGSTPKREYINSP 64
           +  R GK  Y  R    G  R       ++     F      + +       ++  +   
Sbjct: 14  DTGRPGKKRYRVRYQGIGGSRTAEFADMNDACREYFQREKHMWRAISEKEVQRKRPVTIR 73

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
                    L  E   +       +  +  F S + +            ITT  +     
Sbjct: 74  ELMIFYFGRLCDELEMNNIGRDYFLGQKGVFLSLYQRWR--GSKTPIVDITTPDL----- 126

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW--TKEDMQQF 182
                P S       +R  +  A+      INPC               W  T     ++
Sbjct: 127 ----KPISLHNHRRFIRRAYDCAINVGMCNINPCT-----IENKSRNAAWKGTTRKYAKY 177

Query: 183 ----KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ----------K 228
               +   S+  + RLA       GLR  +       ++ ++   +             K
Sbjct: 178 HEVQRLMQSDEPRQRLAVYLGAACGLRLGEVAMLSYDNIFDDSIVLDRHLTKSGDYPGIK 237

Query: 229 TGTIITVELPDGFMKLLAMTPIGKETF-FINNDKQKMNATQFSIWFKAKA-TKAGVNKSA 286
            G    + +   F +LL     G   F F ++     +   FS      A  KA   K+ 
Sbjct: 238 YGVDNEIPVTPEFHRLLNDVQKGNSRFVFESSRGSHFSMAGFSKSIVMPAFVKADFKKTF 297

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADR 328
           H +R ++ ++  + G +  ++    G  + +    TY     R
Sbjct: 298 HSLRHYAVSVWVERGVSLVQISQWLGHASPEVTLRTYAHLFKR 340


>gi|218701013|ref|YP_002408642.1| putative integrase [Escherichia coli IAI39]
 gi|218370999|emb|CAR18827.1| putative integrase [Escherichia coli IAI39]
          Length = 416

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 52/359 (14%), Positives = 122/359 (33%), Gaps = 39/359 (10%)

Query: 22  IYYFRKGHGRRIRLPYPHE----------STFIPAYMSALTGSTPKREYINSPRKKPT-- 69
            Y +R    R   +   +              I A      G +P     +  +K     
Sbjct: 38  RYDYRINGRRETLVIGQYGRDGISLAEAREELIAAKKLLKAGQSPAAAKRDGIKKIRGAE 97

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVES--R 126
           T       Y K      LA ++R   ++  D+ I+   G+    +ITT  +R   +    
Sbjct: 98  TFAVHTDSYMKHVI---LADSTRAMKQAVIDRDILPVLGNKMMAEITTSMVRDLCDRIVE 154

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE--RPKRKTEGIRPWTKEDMQQF-K 183
           +   ++A+Q    +  +++ A  + +   NP   ++           R  T E++  F +
Sbjct: 155 RGGRATAVQAREIISSVYRHANDRGHGLFNPAADIKPSSIAIFKPRERTLTPEEIGLFFR 214

Query: 184 SFWSEGSQ--PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIITVEL 237
           +  + G+    ++A + +L + +R  +   A    +    ++        K      + L
Sbjct: 215 TLDAIGAMGTMKMALKLVLITMVRKGEFTNATWDEIDFKKWTWTIPSDRMKGSRAHVIYL 274

Query: 238 PDGFMKLLAMTP--IGKETFFI---NNDKQKMNATQFSIWFKAKATKAGVNK------SA 286
           P     +L       G   + +    N ++ ++    +            +       + 
Sbjct: 275 PKQAQDILVGLQMCAGGSEYLVPGRYNFRKPLSNAALNSLIDRTVKIINEDGEHIQGFTV 334

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345
           H +R+ ++T+  +AG  +  +      +       Y K A+  R      ++ + ++DS
Sbjct: 335 HDMRRTASTLLHEAGYPSDWIEKALAHEQKGVRAVYNK-AEYARQRAYMLQQWADMIDS 392


>gi|160934533|ref|ZP_02081919.1| hypothetical protein CLOLEP_03405 [Clostridium leptum DSM 753]
 gi|156865986|gb|EDO59358.1| hypothetical protein CLOLEP_03405 [Clostridium leptum DSM 753]
          Length = 412

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 46/329 (13%), Positives = 96/329 (29%), Gaps = 71/329 (21%)

Query: 83  HWGSLAVNSRISFESYFDQ--IIRKSGDFDYRKITTKHIRSGVESRKHTPSS-------A 133
            +  + + +  ++E Y ++     K G    +K+  +        ++ +          A
Sbjct: 88  KYILVRLATHTNYEIYIEKHIYHSKLGSIPLKKLCLEDFIDFFREKELSGRLDKKPGGLA 147

Query: 134 IQFLTSMRVLFKWAV-----RQEYVAINPCLSVERPKRKTEGIRPWTKED---MQQFKSF 185
            + L +MR +   A+     R +++  NP   ++ PK     I+ ++K     ++Q   +
Sbjct: 148 PKTLRNMRNMMSEALARAVNRLQWLDRNPIEGLKTPKVSPPQIQVYSKSHQTCIEQAALY 207

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-------IFSIKTQKTGTI------ 232
             +  +  L     LY+GLR  + C                     +  K          
Sbjct: 208 HED--KNALMVLIDLYTGLRIGELCGLSWLDFGPGKEYFKIRRILERLSKKWAENRSEYQ 265

Query: 233 --ITVELPDGFMKLLAMTPIGKET---------------------------------FFI 257
               V   +     L + P   E+                                  F+
Sbjct: 266 RIFMVGGKEEGATALYLGPPKTESGKRVVYTNDQAVLGFNRIETYQKKMGFYRPDGFLFV 325

Query: 258 NNDKQKMNATQFSIWFKAKATKAGVNKS-AHGVRKFSATISADAGATAHELMATYGWKTV 316
           N +        ++  ++    +AGV+    H +R   AT + +       L    G    
Sbjct: 326 NQNGNPYEPRAYNKLYRDVLQRAGVDYRKFHTLRHTFATRAFELAFDIPTLAEILGHAQK 385

Query: 317 DQAE-TYTKGADRIRLGIKNSRRISSVVD 344
              E  Y    D  +       R +  V 
Sbjct: 386 TTTENMYGHSLDDTKK--SAMARFNRSVG 412


>gi|90020115|ref|YP_525942.1| Fis family transcriptional regulator [Saccharophagus degradans
           2-40]
 gi|89949715|gb|ABD79730.1| phage integrase [Saccharophagus degradans 2-40]
          Length = 362

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 38/268 (14%), Positives = 90/268 (33%), Gaps = 23/268 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRV 142
              A  +  ++     +I     D     +T  H     +S  + H+ S+       ++ 
Sbjct: 23  QGKAATTIDAYSRAVRRITYFF-DESPDTLTQDHFEKYFQSLIQTHSWSTVKTDRNGLQF 81

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202
            +K+ +++E+  +N    + +P          T +++ +      +  + +         
Sbjct: 82  FYKYVLQKEWKWVN----IVKPPVVKVLPDVLTIDEIHRLLDSAKD-LRYQTFILVCFSM 136

Query: 203 GLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELP-DGFMKLLAMTPIGKETFFINN 259
           GLR S++    V  + +      I+  K      V LP      L       +   ++  
Sbjct: 137 GLRLSETLNLKVGDIDSERMKVHIREGKGKKDRYVTLPLSALQALRKYWKTHRNPNYLFP 196

Query: 260 DKQ----------KMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHEL 307
                         M   +    F++    +G+ K  S H +R    T+  +A  +  ++
Sbjct: 197 SGNTAAQRQDATIHMGRGRLQQKFRSIVRHSGIRKKISIHSLRHSYGTLLTEANISLRKI 256

Query: 308 MATYGWKTVDQAETYTKGADRIRLGIKN 335
               G  + +    YT+ +D   +  +N
Sbjct: 257 QQEMGHVSPNTTARYTQLSDVFEMHTEN 284


>gi|76799149|ref|ZP_00781333.1| site-specific recombinase, phage integrase family [Streptococcus
           agalactiae 18RS21]
 gi|76585501|gb|EAO62075.1| site-specific recombinase, phage integrase family [Streptococcus
           agalactiae 18RS21]
          Length = 379

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 61/356 (17%), Positives = 117/356 (32%), Gaps = 47/356 (13%)

Query: 10  FVTKERTRHGKIIYYFR--------KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYI 61
            VTK+  + GK  YYF+        K +  R R     +  F      A T +  K +  
Sbjct: 8   GVTKD-DKTGKYTYYFKAGVDLATGKPYQERRRGFQTAKEAF-----EARTRALNKVQQK 61

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121
              +    T K  + E     ++ + + +     +  FD+ I+  G    R+ITT  + +
Sbjct: 62  GGIKHTQWTFKQFMEEVFMPNYYATTSPDLEHRRQVIFDEFIQYFGKKKPREITTYDVIN 121

Query: 122 GVESRKHTPSS--AIQFLTSMRVLFKWAVRQEYVAIN-PCLSVERPKRKTEGIRPWTKED 178
                    S+  A   +T +  + K A +   +    P  ++       + I  WTK++
Sbjct: 122 YRNGLLERYSNSYARNKMTLLNQVLKTAKKYGLIFHEIPTSNISPIPIIKKHIDFWTKDE 181

Query: 179 MQQFKSFWSEGSQ----PRLAFEFLLYSGLRCSDSCRAGVQHLQ---------------- 218
            Q+      + S         F    ++G+R +++     + +                 
Sbjct: 182 FQKVIQCLDKKSYFEHFVYTLFWLYYFTGMRVNEATALYWEDVDFEKKTLAINHNLQYIN 241

Query: 219 -NNIFSIKTQKT-GTIITVELPDGFMKLL-----AMTPIGKETFFINNDKQKMNATQFSI 271
             N       KT  +  T+ L D  + +L         + K  F ++ D           
Sbjct: 242 RENWVRRNKLKTESSRRTIGLDDNTLNVLKEWKERQAKVDKIPFILSLDGNPYRKRSIRD 301

Query: 272 WFKAKATKAGVNK-SAHGVRKFSATISA-DAGATAHELMATYGWKTVDQA-ETYTK 324
                + +AGV      G+R   A++   +    A  +    G   V      Y+ 
Sbjct: 302 QILKYSKRAGVKYIQPKGLRHSHASLLINEYNVNALYIQRRLGHSDVKTTLSIYSH 357


>gi|298369050|ref|ZP_06980368.1| xylulose-5-phosphate/fructose-6-phosphate phosphoketolase
           [Neisseria sp. oral taxon 014 str. F0314]
 gi|298283053|gb|EFI24540.1| xylulose-5-phosphate/fructose-6-phosphate phosphoketolase
           [Neisseria sp. oral taxon 014 str. F0314]
          Length = 356

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 80/222 (36%), Gaps = 9/222 (4%)

Query: 111 YRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAV-RQEYVAINPCLSVERPKRKTE 169
              I+   I   V+    + S+  ++L  +R +   A     ++   P L +++   K  
Sbjct: 94  LHHISRDFIMDVVDRLPCSNSTKNRYLALIRSILYKAQNEWGWIDNAPKLKLKKEAAKRI 153

Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIK 225
                  E+ ++  +   +    R    F   +GLR  +      + +  +         
Sbjct: 154 RW--LKPEEAERLINALPDN-HWRAIAIFSFCTGLRQRNVFGLRWEQVDLDRKTAWIYPD 210

Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NK 284
             K+G  I V L D  +++L+      ET+   N + K  +   S  +K    +AG+ N 
Sbjct: 211 ETKSGRPIGVPLNDVAVRVLSERMGIHETYVFTNRENKPVSALSSKMWKRTLERAGISNF 270

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
             H +R   A+     G     L    GW+ +D    Y   A
Sbjct: 271 RWHDIRHTWASWLVQRGVPLVALKEMGGWERLDMVMRYAHLA 312


>gi|288906333|ref|YP_003431555.1| integrase/recombinase, phage associated [Streptococcus gallolyticus
           UCN34]
 gi|325979346|ref|YP_004289062.1| phage integrase family integrase/recombinase [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
 gi|288733059|emb|CBI14640.1| integrase/recombinase, phage associated [Streptococcus gallolyticus
           UCN34]
 gi|325179274|emb|CBZ49318.1| phage integrase family integrase/recombinase [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
          Length = 388

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 48/284 (16%), Positives = 93/284 (32%), Gaps = 45/284 (15%)

Query: 87  LAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSS--------AIQFL 137
           + +N+R + E      ++   GD+   K+TT  I+  V    +  +           Q  
Sbjct: 85  VKINTRKAVEGQIRVHLLPAFGDYKLEKLTTPIIQQQVNKWANDYNKGKKGSYKHYNQLH 144

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG---IRPWTKEDMQQFKSFWSEGSQPR- 193
              + + ++AV  + +  NP   V  P++K      I+   K++++QF  +     + + 
Sbjct: 145 ALNKRILQYAVIMQLIPFNPAREVIVPRKKQTEEVKIKFLDKQELKQFYDYLDTLDKSKY 204

Query: 194 ------LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-VELPDGFMKLLA 246
                 + ++ LL +G R  +        +  +   I   KT      V  P        
Sbjct: 205 YNLFDVVLYKTLLATGCRIGEVLALEWSDIDLDNGYISINKTLNRDDEVNCPKSKAGYRD 264

Query: 247 MTPIGKETFFINNDKQKMNATQ-----------------------FSIWFKAKATKAGVN 283
           ++        + + K +                                 +     AGV+
Sbjct: 265 ISIDKATILMLKHYKNRQTIQAWQHKRTETVVFSTFVNKYASQPALRRRLERHLKNAGVS 324

Query: 284 K-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKG 325
             S HG+R   ATI  +AG    +L    G   +     TY   
Sbjct: 325 YVSFHGLRHTHATIMLNAGIQPKDLQYRLGHSDISMTLNTYVHA 368


>gi|283796748|ref|ZP_06345901.1| phage integrase [Clostridium sp. M62/1]
 gi|291075634|gb|EFE12998.1| phage integrase [Clostridium sp. M62/1]
          Length = 402

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 64/383 (16%), Positives = 119/383 (31%), Gaps = 74/383 (19%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGH--GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64
           LP +     +  G   Y  R     GRR+ L              A+     K    ++P
Sbjct: 8   LPDY--GTVSMKGTQYYRTRVTDQQGRRVSLYARTREELYQKEQEAIQQIENKTYRRSTP 65

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISF-ESYFDQIIRKSGDFDYRKITTKHIRSGV 123
             +    KWL+ +   SA    + + + I +     + II+  GD     +T   IR  +
Sbjct: 66  TVEEYCEKWLLMQ---SAQ---IRMTTLIDYTSKVKNYIIKPLGDMHMGDVTADDIRLAL 119

Query: 124 ESRKHTPSSAIQFLTSM-RVLFKWAVRQEYVAINPCLSVER--PKRKTEGIRPWTKEDMQ 180
            +     +S  + +  + + +F  A+  + +  NP + +++       +   P T E + 
Sbjct: 120 LAASKKSASVYKSVNVLYKCIFTAAMESKIIDENPTIYLKKNVGGIPQKDRLPLTDEQVD 179

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQ--------- 227
           +       G  P +     LY+GLR  +        +  +      +++           
Sbjct: 180 KLLDAIY-GLPPYVFVMLGLYAGLRREEILGLQWDSVYLDCEAPYLTVRRAWHTEHNRPV 238

Query: 228 -----KTGTIIT-VELPDGFMKLL--AMTPIGKETFFINNDKQKMNATQFSIWF------ 273
                KT      V LPD  ++ L  A      +    N D   ++ TQF   +      
Sbjct: 239 ILTELKTKAAHRNVPLPDNLLECLKEAKKTSTSDFVVANRDGDPLSYTQFKRLWQYIVTR 298

Query: 274 --KAKA-------------------TKAGVNK----------SAHGVRKFSATISADAGA 302
             K +                     KA  N           + H +R    T    A  
Sbjct: 299 TTKERCYYRYEDGKRVKHTVKPVLGEKAAHNGNVVYSLDFEVTPHQLRHTYITNLIHASV 358

Query: 303 TAHELMATYGWKTVDQA-ETYTK 324
               +    G ++     + Y K
Sbjct: 359 DPKTVQYLAGHESSKITMDIYAK 381


>gi|212702760|ref|ZP_03310888.1| hypothetical protein DESPIG_00788 [Desulfovibrio piger ATCC 29098]
 gi|212673817|gb|EEB34300.1| hypothetical protein DESPIG_00788 [Desulfovibrio piger ATCC 29098]
          Length = 394

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 48/315 (15%), Positives = 89/315 (28%), Gaps = 34/315 (10%)

Query: 40  ESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI---SEYRKSAHWGSLAVNSRISFE 96
              ++ A    +       E     RK  T    L+     Y       +++  +    +
Sbjct: 35  GPEWMAAKTWEVERKKEFLELRERQRKTLTGFGLLLAWGEAYLDHVG-RTMSRITLTEKQ 93

Query: 97  SYFDQI---IRKSGDFDYRKITTKHIRSGVESRK--HTPSSAIQFLTSMRVLFKWAVRQE 151
           +    +    R++G      +T       +        P  A  +  ++   + WAV   
Sbjct: 94  TVMQALFGYCREAGLTGVEDLTRSTWTLFLTKVASERGPRRANVYRKNLLAAWNWAVDSG 153

Query: 152 Y----VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCS 207
           +     A  P   +     +        +ED+   K       Q  +      Y+G R  
Sbjct: 154 FPGFPQAHCPLERIRPFPVEAGVRYVPPEEDV--IKVLQQAHGQDLVMLLTYYYTGARRG 211

Query: 208 DSCRAGVQHLQNNIFSIK------TQKTGTIITVELPDGFMKLLA----MTPIGKETFFI 257
           +  R     +  +  SI+         +     V +     K L     + P   +  F+
Sbjct: 212 EVFRLLWSDVNFDSGSIRLVDHKGRDGSSRARWVPMHPELAKALRWWQAVRPCVVDNVFM 271

Query: 258 NND-----KQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATY 311
                    +     Q S        KAGV     H +R  +A I+  AG  A       
Sbjct: 272 QEHCDGTLGEPF--QQRSKLMPRLCRKAGVKPFGFHALRHKAAAITFTAGGLA-VAQTLM 328

Query: 312 GWKTVDQAETYTKGA 326
           G       + Y + A
Sbjct: 329 GHSRATTTDIYVRSA 343


>gi|291564051|emb|CBL42867.1| Site-specific recombinase XerC [butyrate-producing bacterium SS3/4]
          Length = 409

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 47/329 (14%), Positives = 89/329 (27%), Gaps = 64/329 (19%)

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVES 125
           K  TL  L   Y  +     L   +R+++   ++ ++  + G+    ++   HI++    
Sbjct: 73  KKMTLNTLFERYMAT---RELKEPTRVNYIRVWNNRVKDEIGNIKVVQMLPSHIKAYYSK 129

Query: 126 RKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLS-VERPKRKTEGIRPWTKEDMQQ 181
                   S+       +    + AV  + +  NP    +    R  E     T    ++
Sbjct: 130 LSKAGYAHSTIKYINNMIFPALEMAVDDDIIRKNPAKGSISDYGRPAEERVALTISQQEK 189

Query: 182 ---FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN------------------ 220
              F    +  +        ++ +GLRC +      + +                     
Sbjct: 190 LIDFVKQSNVYNTYYPMLTIMIGTGLRCGELIGLTWKDVDTRARRLNVDHQLIYKNYGDG 249

Query: 221 -IFSIKTQKTGTIIT-VELPDGFMKLLAMTPIGKETF---------------FINNDKQK 263
             F I T KT + I  + +     K                           F     + 
Sbjct: 250 CRFHISTPKTDSGIRVIPMTQEVQKAFEEQRKINFMLAKDKSYEVDGYSGFVFTAKSGRP 309

Query: 264 ----------------MNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHE 306
                            N  +     K       + K SAH +R  + T  A+       
Sbjct: 310 LMPYGVNSVLYNIVDAYNKAEVQKAKKEHRKAELLPKVSAHVMRHTACTRMAECRMDIKV 369

Query: 307 LMATYGWKTVDQA-ETYTKGADRIRLGIK 334
           L    G    D   E Y    D  R+  +
Sbjct: 370 LQYIMGHAHFDVTMEVYNHLGDMARIENE 398


>gi|256371427|ref|YP_003109251.1| integrase family protein [Acidimicrobium ferrooxidans DSM 10331]
 gi|256008011|gb|ACU53578.1| integrase family protein [Acidimicrobium ferrooxidans DSM 10331]
          Length = 332

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 41/290 (14%), Positives = 81/290 (27%), Gaps = 22/290 (7%)

Query: 50  ALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI---IRKS 106
           A            +    P+  +W I E+   A    L   +R  +      I       
Sbjct: 28  AWAQMVVPAPETRARGWSPSEPRWRIDEFL--AENVQLRPATRRRYRVVLSNIQARAASL 85

Query: 107 GDFDYRKITTKHIRSGVESRKHT----PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162
           G     ++    +R  + +        P++       +R    W   +  +A+   L+  
Sbjct: 86  GAASPAQLDAHVLRRLLAAPGSNGPYAPATRDLERVVLRRYLVWEGSEGALALAAQLAAF 145

Query: 163 RPKRKTEGIRPWTKEDMQQFKS--FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-- 218
             +R     R   +  +            ++     E    +GLR S+ C      L   
Sbjct: 146 ARRRPRPLPRGIDETTLGSTLDGLDARADARAMAILELAYATGLRASELCALDRSDLGPG 205

Query: 219 NNIFSIKTQKTGTIITVELPDG----FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274
           +    ++  K G    V + +         LA          +     +++        +
Sbjct: 206 DRWLVVRAGKGGRTRRVPIGEAARTALRAYLATRDDDAPALLLGARGARLSPRGLQRLTR 265

Query: 275 AKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
                  ++   H +R   AT   D GA    +    G   +   E YT 
Sbjct: 266 RY-----LDVHPHQLRHAFATHLLDHGADVRSIQELLGHARLATTEIYTH 310


>gi|255009702|ref|ZP_05281828.1| putative transposase [Bacteroides fragilis 3_1_12]
 gi|313147488|ref|ZP_07809681.1| transposase [Bacteroides fragilis 3_1_12]
 gi|313136255|gb|EFR53615.1| transposase [Bacteroides fragilis 3_1_12]
          Length = 408

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 52/295 (17%), Positives = 94/295 (31%), Gaps = 36/295 (12%)

Query: 76  SEYRKSAHWGSLAVNSRISFE----SYFDQIIRKSG--DFDYRKITTKHIRSGVESRKH- 128
            +Y +     + A  +   +E       + +  K    D   + I    I   +   K+ 
Sbjct: 118 EQYLQKVK-MNTADKTYSRYELTKKRLMEFMKFKYSVSDMLIKDINVVFIEDFLLYIKNN 176

Query: 129 ---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
              + ++A++F+   R +  +A     V  +P     R + +       T E++    + 
Sbjct: 177 YGCSHNTAMKFVQRFRTVVNFAKNTGLVTADP-FGNYRVRFERTDRDYLTMEEITAIYNH 235

Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVEL 237
                   Q R  F F  Y+ L   D C    + ++           K  KT    TV L
Sbjct: 236 KFSTKRLEQVRDLFVFSCYTALSYIDVCELRQEDIRTGFDGNLWIIRKRHKTNVTSTVRL 295

Query: 238 PDG----FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRK 291
            D       K     P GK    I+N K        + + K  A   G+ K  + H  R 
Sbjct: 296 LDIPKAILEKYKDKLPNGKILPVISNQK-------MNDYLKEIAGICGIEKNLTYHVARH 348

Query: 292 FSATI-SADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345
             AT      G     +    G   +   + Y +  D       +   ++  +D+
Sbjct: 349 SCATSVLLSNGVPIETVSKILGHTNIRTTQIYARITDLK--VSNDMEMLAQKLDA 401


>gi|320175069|gb|EFW50182.1| Integrase [Shigella dysenteriae CDC 74-1112]
          Length = 416

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 52/359 (14%), Positives = 122/359 (33%), Gaps = 39/359 (10%)

Query: 22  IYYFRKGHGRRIRLPYPHE----------STFIPAYMSALTGSTPKREYINSPRKKPT-- 69
            Y +R    R   +   +              I A      G +P     +  +K     
Sbjct: 38  RYDYRINGRRETLVIGQYGRDGISLAEAREELIAAKKLLKAGQSPATAKRDGIKKIRGAD 97

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVES--R 126
           T       Y K      LA ++R   ++  D+ I+   G+    +ITT  +R   +    
Sbjct: 98  TFAVHTDSYMKHVI---LAESTRAMKQAVIDRDILPVLGNKMMAEITTSMVRDLCDRIVE 154

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE--RPKRKTEGIRPWTKEDMQQF-K 183
           +   ++A+Q    +  +++ A  + +   NP   ++           R  T E++  F +
Sbjct: 155 RGGRATAVQAREIISSVYRHANDRGHGLFNPAADIKPSSIAIFKPRERTLTPEEIGLFFR 214

Query: 184 SFWSEGSQ--PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIITVEL 237
           +  + G+    ++A + +L + +R  +   A    +    ++        K      + L
Sbjct: 215 TLDAIGAMGTMKMALKLVLITMVRKGEFTNATWDEIDFKKWTWTIPSDRMKGSRAHVIYL 274

Query: 238 PDGFMKLLAMTP--IGKETFFI---NNDKQKMNATQFSIWFKAKATKAGVNK------SA 286
           P     +L       G   + +    N ++ ++    +            +       + 
Sbjct: 275 PKQAQDILVGLQMCAGGSEYLVPGRYNFRKPLSNAALNSLIDRTVKIINEDGEHIQDFTV 334

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345
           H +R+ ++T+  +AG  +  +      +       Y K A+  R      ++ + ++DS
Sbjct: 335 HDMRRTASTLLHEAGYPSDWIEKALAHEQKGVRAVYNK-AEYARQRAYMLQQWADMIDS 392


>gi|266622036|ref|ZP_06114971.1| integrase [Clostridium hathewayi DSM 13479]
 gi|288866275|gb|EFC98573.1| integrase [Clostridium hathewayi DSM 13479]
          Length = 406

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 47/297 (15%), Positives = 93/297 (31%), Gaps = 56/297 (18%)

Query: 86  SLAVNSRISF-ESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRV 142
            LA N++ ++ E Y   I    G      +   H ++ +   + T   S+  Q   +M  
Sbjct: 82  DLAPNTKRNYQERYKWNIQPVIGAMCIADVKPMHCKAVLNRMETTYAGSTIRQAYITMGT 141

Query: 143 LFKWAVRQEYVAINPCLSVE--RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200
           + K AV  + +A +P   V   +P R  + I+  T E+ ++F    +  S     +  LL
Sbjct: 142 MLKSAVMNDIIAKHPMNGVRYTKPVRAVDDIKYLTVEEQEKFLE-AAARSHNYRQYALLL 200

Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQKT------------------GTIITVELPDGFM 242
            +GLR ++        +     ++   K+                   +  T+ L D   
Sbjct: 201 ETGLRTAEMIGLTWDAIDWKNRTLTVNKSLEYRHSQGYWRAGPPKTQKSYRTIPLTDKAY 260

Query: 243 KLL------------------------------AMTPIGKETFFINNDKQKMNATQFSIW 272
            +L                                  +    F      +    + +   
Sbjct: 261 SILKSCYDEKDSRKSSETLSQVLEYIDSRTGENKCLIMRDLVFVNWRTGEPAKNSSYDTH 320

Query: 273 FKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGAD 327
                 +AG+ +   H +R   AT + + G     L    G  ++    + Y    D
Sbjct: 321 LYKLCDEAGIKRFCMHALRHTYATRAIERGVQPKVLQQLLGHASIKTTMDRYVHVTD 377


>gi|256853560|ref|ZP_05558925.1| site-specific recombinase [Enterococcus faecalis T8]
 gi|256710503|gb|EEU25546.1| site-specific recombinase [Enterococcus faecalis T8]
 gi|315143469|gb|EFT87485.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX2141]
 gi|315157213|gb|EFU01230.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0043]
          Length = 382

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 53/350 (15%), Positives = 118/350 (33%), Gaps = 43/350 (12%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSA----LTGSTPKREYINSP 64
            +V     + G   + +R  +   ++           +  +A    L           S 
Sbjct: 11  KYVFSYSNKKG-TFWGYRYPYYNSLKHRKEASKRGFESERAANKALLKIQYALETQNTSF 69

Query: 65  RKKPT-TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIR-- 120
            +    T+   I  +   A   + +V+++ + ES     I    G+     +     +  
Sbjct: 70  IENKQLTIDEWIDVWIPYAQ-DNWSVSTKQNIESAIKFHISPLIGNQKLSSLNKITYKRE 128

Query: 121 ---SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
                 +  K+T S+   +   +  +   AV  + +  N     +     +  +R ++K+
Sbjct: 129 FIDKLRQKNKYTESTIQTWHKIVMRMINAAVHNQIIPSNTLTGFKF--DLSNNVRSFSKK 186

Query: 178 DMQQFKSFWS-EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ------------NNIFSI 224
           ++Q+F +    E  Q ++ F  LL SG+R  +        +              +    
Sbjct: 187 ELQRFVAVLENEDIQIQVIFLTLLKSGMRKGELMGLRWNDIDLNEKYFDINSTRGDYGEN 246

Query: 225 KTQKTGTIITVELPDGFMKLLAMTP--------------IGKETFFINNDKQKMNATQFS 270
           K +   +I  V   +  + L+                    K+ F +++    +  ++ +
Sbjct: 247 KPKTKTSIRKVYFDNSLLTLIKKYKNHEKERLLREGIILREKDYFILSSRNLPIKQSRIT 306

Query: 271 IWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
             F+    KA V N + HG+R   AT   +AGA    +    G K ++  
Sbjct: 307 YIFRLLCEKAEVQNITVHGLRHTHATFLIEAGANIKYVSTRLGHKNINIT 356


>gi|256619518|ref|ZP_05476364.1| site-specific recombinase [Enterococcus faecalis ATCC 4200]
 gi|256599045|gb|EEU18221.1| site-specific recombinase [Enterococcus faecalis ATCC 4200]
          Length = 389

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 60/351 (17%), Positives = 120/351 (34%), Gaps = 45/351 (12%)

Query: 9   PFVTKERTRHG---KIIY-YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64
            +V     + G      Y Y+     R+       ES    A   AL       E  N+ 
Sbjct: 18  KYVFSYSNKKGTFWGYRYPYYNSLKHRKEASKRGFESE--RAANKALLKIQYDLETQNTS 75

Query: 65  --RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIR- 120
               K  T+   I  +   A   + +V+++ + ES     I    G+     +     + 
Sbjct: 76  FIENKQLTIDEWIKVWIPYAQ-DNWSVSTKQNIESAIKFHISPLIGNQKLSSLNKITYKR 134

Query: 121 ----SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
                  +  K+T S+   +   +  +   AV  + +  N     +     +  +R ++K
Sbjct: 135 EFIDKLRQENKYTESTIQTWHKIVMRMINAAVHNQIIPSN--TLTDFKFDLSNNVRSFSK 192

Query: 177 EDMQQFKSFWS-EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ------------NNIFS 223
           +++Q+F +    E  Q ++ F  LL SG+R  +        +              +   
Sbjct: 193 KELQRFIAVLENEDIQTQVIFLTLLKSGMRKGELMGLRWSDIDLNEKYFDINSTRGDYGE 252

Query: 224 IKTQKTGTIITVELPDGFMKLLAMTP--------------IGKETFFINNDKQKMNATQF 269
            K +   +I  V   +  + L+                    K+ F +++    +  ++ 
Sbjct: 253 NKPKTKTSIRKVYFDNSLLTLIKKYKNHEKERLFREGIILSDKDYFILSSRNLPIKQSRI 312

Query: 270 SIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
           +  F+    KA V N + HG+R   AT   +AGA    +    G K ++  
Sbjct: 313 TYMFRLLCEKAEVQNITVHGLRHTHATFLIEAGANIKYVSTRLGHKNINIT 363


>gi|118474094|ref|YP_892018.1| phage integrase family site specific recombinase [Campylobacter
           fetus subsp. fetus 82-40]
 gi|118413320|gb|ABK81740.1| site-specific recombinase, phage integrase family [Campylobacter
           fetus subsp. fetus 82-40]
          Length = 354

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 26/194 (13%), Positives = 78/194 (40%), Gaps = 18/194 (9%)

Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGS------QPRLAFEFLLYSGLRCSDSCRAGVQHL-- 217
           +  +      +E++++F +   E        + +L  + ++++G+R S++     + +  
Sbjct: 160 KGQKLPEFMNEEEVKRFLNAIDETDFKMNSNRNKLIIKTIVFTGIRVSEALNLKRKDISE 219

Query: 218 QNNIFSIKTQKTGTIITV------ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI 271
             +++ ++ +  G    +       + +    ++      +   F+N + +K+     S 
Sbjct: 220 DGDLYILRIRGKGNKYRIVMIKKHLIDEHLQNIVINYINSEGYLFVNRNGEKLTQAYVSR 279

Query: 272 WFKAKATKAGVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GAD 327
             +     AG+ K    AH +R   AT+          +    G  +++ +  YT   +D
Sbjct: 280 IVEQILFGAGIRKEKNGAHMLRHTFATMLYKKQKDLVLVQEALGHASLNTSRIYTHFDSD 339

Query: 328 RIRLGIKNSRRISS 341
           +++L  K +  ++ 
Sbjct: 340 KLKLAAKVAEDLND 353


>gi|29566822|ref|NP_818386.1| gp85 [Mycobacterium phage Omega]
 gi|29425547|gb|AAN12729.1| gp85 [Mycobacterium phage Omega]
          Length = 424

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 55/341 (16%), Positives = 107/341 (31%), Gaps = 52/341 (15%)

Query: 23  YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSA 82
           +Y      +R +  +P++        +              P+ +  T   +  ++  + 
Sbjct: 61  WYIDTAGRQRTK-KFPNKKA--AERWADKQAGDVNAGAWADPQAQKETFSVVAEKWYATK 117

Query: 83  HWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRSGVESRKHTPS---------S 132
              +    ++  + +  D I + K GD   R I  + ++  V     T           S
Sbjct: 118 --SNREATTKHGYRNILDTIVLPKWGDTPIRNIDHESLQDWVNELSTTGEYRTKGEGGFS 175

Query: 133 AIQFLT---SMRVLFKWAVRQEYVAINPCLSVERP-KRKTEGIRPWTKEDMQQFKSFWSE 188
           A + +     +  + K+A+R + +  NP   +E P KRK    R  T + +Q+F +    
Sbjct: 176 ASRTIQIHLVVNGVMKYALRTDRILKNPAEGLELPTKRKNTRQRYLTHKQLQEFAA--EM 233

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI---------KTQKTGTIITVELPD 239
           G    L      Y G R S++  A  +  +  I+ +         K  KT     + +PD
Sbjct: 234 GRFEGLTLLLG-YCGARTSEAFGARGRDFRGRIWELYGAIVRNVEKDTKTHRARFIPIPD 292

Query: 240 GFMKLLAMTPIGKETFFINNDKQ---KMNATQFSIWFK------------------AKAT 278
                + M        F               F    +                     T
Sbjct: 293 VVWNKIQMPANPDALVFPGRRGHITNGEYRWAFDGALRTMQERTEKLRAEEIAETGRATT 352

Query: 279 KAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
            A    + H +R   A+++  +GA    +    G  T    
Sbjct: 353 PAFPRITPHDLRHTCASLAISSGANVKAVQNLLGHATAVMT 393


>gi|294616687|ref|ZP_06696457.1| integrase [Enterococcus faecium E1636]
 gi|291590441|gb|EFF22180.1| integrase [Enterococcus faecium E1636]
          Length = 379

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 45/251 (17%), Positives = 92/251 (36%), Gaps = 43/251 (17%)

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWT-------KEDMQQFKS 184
             Q  T++ V+  +A+ ++Y+  NP L+V+  PK+  E  R  +       KE++ Q   
Sbjct: 131 TKQTKTTLSVMLNYAIDRKYIQRNPALAVKIHPKKVEEEKRRLSMDKKYLDKEEIDQILK 190

Query: 185 FWSEGSQPRL---AFEFLLYSGLRCSDSCRAGVQHLQNNIFSI----------------- 224
                 + +L     EFL  +GLR  +     ++  ++   SI                 
Sbjct: 191 QLYSNPRRKLHGIIAEFLYLTGLRYGELLALQMKDYEDGKISINGTLDYTSVKMDNAIKT 250

Query: 225 KTQKTGTIITVELPDGFMKL---------LAMTPIG-KETFFINNDKQKMNATQFSIWFK 274
             + T +   V+LP+   +L         LA  P    +  FI+     +    F+    
Sbjct: 251 TPKNTYSQREVQLPNRAKELIESVIADNILAGRPTDPDQYIFISTSGTPLTLHSFNAILH 310

Query: 275 A--KATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRL 331
              +  +   + S+H  R    ++ ++ G     +M   G    +     Y     R + 
Sbjct: 311 KVEEELELEKSLSSHIFRHSHVSLLSELGVPLKAIMERVGHSDANTTLSIYNHVTKRAKQ 370

Query: 332 GIKNSRRISSV 342
            +    +++S+
Sbjct: 371 QV--IDKLNSL 379


>gi|150004395|ref|YP_001299139.1| tyrosine type site-specific recombinase [Bacteroides vulgatus ATCC
           8482]
 gi|149932819|gb|ABR39517.1| tyrosine type site-specific recombinase [Bacteroides vulgatus ATCC
           8482]
          Length = 386

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 39/260 (15%), Positives = 86/260 (33%), Gaps = 30/260 (11%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVESRKHTPSSAIQFLTSMR 141
             L  +++ +  +    +       ++  +T          +    +  ++  + +  ++
Sbjct: 117 SQLKDSTKRNHLTTISLLQSFKPTIEFEDLTYNFVTDFEKNLYESGYQTNTVAKHMKHLK 176

Query: 142 VLFKWAVRQEYVAINP-CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG-----SQPRLA 195
                A+ + Y+  N       + K K         E+M++ +     G          A
Sbjct: 177 SFVNAAINKGYIDPNNYAFRRYKIKMKEGKHVFLLPEEMKKLEEVSLTGRNSCLEHTLDA 236

Query: 196 FEFLLYSGLRCSDSCRAGVQHL--QNN--IFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251
           F F  Y+GLR SD      +++   +        + KTGT + + L         +   G
Sbjct: 237 FLFCCYTGLRYSDFVNLNEKNIVKMDGKLWLIFDSVKTGTEVKLPL--------NLLFEG 288

Query: 252 KETFFINNDKQKMNA-------TQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302
           K    +   + K ++       +  +         A ++K  S H  R  +AT+    GA
Sbjct: 289 KALTLLQKYQGKWSSFFSIKNNSSVNKELIRIGKLAKISKHFSFHSARHTNATLLIYKGA 348

Query: 303 TAHELMATYGWKTVDQAETY 322
               +    G K +   + Y
Sbjct: 349 NITTVQKLLGHKNLATTQIY 368


>gi|85709932|ref|ZP_01040997.1| hypothetical protein NAP1_13643 [Erythrobacter sp. NAP1]
 gi|85688642|gb|EAQ28646.1| hypothetical protein NAP1_13643 [Erythrobacter sp. NAP1]
          Length = 322

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 46/289 (15%), Positives = 99/289 (34%), Gaps = 24/289 (8%)

Query: 48  MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG 107
           ++   G  P+R  +  P     T++  +  Y   A    L+  +   +    +  +    
Sbjct: 25  LALRRGEDPRRPKVKVP-----TIEEAMERYL--AGRPDLSAETVRWYRKKVEVPLAPLR 77

Query: 108 DFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINP-CLSVERP 164
                +I  + +RS  E   +K  P  A   +  +++L     R   +  NP    V   
Sbjct: 78  KLPVDRIDRETVRSLHEKITQKAGPYGANGAMRVLKLLLNDVARTHDLDPNPVSRGVRMN 137

Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA-FEFLLYSGLRCSDSCRAGVQHL-QNNIF 222
           K +        +E    ++       + R A +  ++ +GLR +++  A  +HL  + + 
Sbjct: 138 KEEPRDWAVGPQEMPLLWRRLDDMEDRVRRACWLLMMATGLRSTNARSARWEHLEDDGVL 197

Query: 223 SIKTQKTGTIITVELPDGFMKLL-----AMTPIGKETFFINNDKQKMNATQFSIWFKAKA 277
            +   K+G    + LP   ++ L        P+     F ++  +       S + +  A
Sbjct: 198 FVPKAKSGRSFRLPLPRLVIQELGEVKELTAPLESPQIFPSSGSK-------SGYIERMA 250

Query: 278 TKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
                  + H +R    T + +AG     +           +  Y   A
Sbjct: 251 RTTEFPYAPHQMRHTYRTHALEAGIDFQSVTMLMDHANTHVSFNYVTRA 299


>gi|315164754|gb|EFU08771.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX1302]
          Length = 382

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 53/350 (15%), Positives = 118/350 (33%), Gaps = 43/350 (12%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSA----LTGSTPKREYINSP 64
            +V     + G   + +R  +   ++           +  +A    L           S 
Sbjct: 11  KYVFSYSNKKG-TFWGYRYPYYNSLKHRKEASKRGFESERAANKALLKIQYALETQNTSF 69

Query: 65  RKKPT-TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIR-- 120
            +    T+   I  +   A   + +V+++ + ES     I    G+     +     +  
Sbjct: 70  IENKQLTIDEWIDVWIPYAQ-DNWSVSTKQNIESAIKFHISPLIGNQKLSSLNKITYKRE 128

Query: 121 ---SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
                 +  K+T S+   +   +  +   AV  + +  N     +     +  +R ++K+
Sbjct: 129 FIDKLRQKNKYTESTIQTWHKIVMRMINAAVHNQIIPSNTLTGFKF--DLSNNVRSFSKK 186

Query: 178 DMQQFKSFWS-EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ------------NNIFSI 224
           ++Q+F +    E  Q ++ F  LL SG+R  +        +              +    
Sbjct: 187 ELQRFVAVLENEDIQTQVIFLTLLKSGMRKGELMGLRWSDIDLAEKYFDINSTRGDYGEN 246

Query: 225 KTQKTGTIITVELPDGFMKLLAMTP--------------IGKETFFINNDKQKMNATQFS 270
           K +   +I  V   +  + L+                    K+ F +++    +  ++ +
Sbjct: 247 KPKTKTSIRKVYFDNSLLTLIKKYKNHEKERLLREGIILRDKDYFILSSRNLPIKQSRIT 306

Query: 271 IWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
             F+    KA V N + HG+R   AT   +AGA    +    G K ++  
Sbjct: 307 YIFRLLCEKAEVQNITVHGLRHTHATFLIEAGANIKYVSTRLGHKNINIT 356


>gi|298374817|ref|ZP_06984775.1| integrase [Bacteroides sp. 3_1_19]
 gi|298269185|gb|EFI10840.1| integrase [Bacteroides sp. 3_1_19]
          Length = 408

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 40/243 (16%), Positives = 87/243 (35%), Gaps = 24/243 (9%)

Query: 108 DFDYRKITTKHIRSGVESRKHTPS----SAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163
           D   ++I    I+  +   K   +    + I+++  ++ +   A+  +++  NP +++  
Sbjct: 156 DIPMKEINNAIIQDYIHFLKSKKNLQENTVIRYMKVVKKITNMALANDWIDKNPFMNIHF 215

Query: 164 PKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220
            +++       TKE+++  ++           R  F F  ++GL   D      +HL  +
Sbjct: 216 HEQEVHK-EFLTKEELEILRTKVFNVPRLELVRDIFLFQCWTGLAFIDVSELKPEHLVTD 274

Query: 221 -----IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ--KMNATQFSIWF 273
                      QKT  +  + L D  + +L      K             +   Q +  +
Sbjct: 275 NEGNIWIRKARQKTKIMCNIPLLDIPLAILDKY---KGYPICEKKGTLLPVPCNQKANSY 331

Query: 274 -KAKATKAGVNK--SAHGVRKFSATI--SADAGATAHELMATYGWKTVDQAETYTKGADR 328
            K  A   G+ K  + H  R   +T+   A+   +   +    G       + Y K  D+
Sbjct: 332 LKEIADFCGIKKNLTTHTGRHTFSTVVTLANN-VSLENVSKMLGHTNTKMTQRYAKVLDQ 390

Query: 329 IRL 331
             L
Sbjct: 391 SIL 393


>gi|268608965|ref|ZP_06142692.1| integrase family protein [Ruminococcus flavefaciens FD-1]
          Length = 384

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 45/313 (14%), Positives = 99/313 (31%), Gaps = 57/313 (18%)

Query: 82  AHWGSLAVNS---RI--SFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSSAIQ 135
           + W  L  N+   +   S+ S   ++     +    ++T   I++ +      +P+S   
Sbjct: 69  SQWLKLKKNTVSVQRYNSYSSISKRLSA-LDESTITRLTVSDIQNVIFDNSDLSPTSLSM 127

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKR-KTEGIRPWTKEDMQQFKSFWSEGSQP-- 192
             ++ + + + A+    +  NP ++V+ PK+ +    R  T+E+ Q     W   +    
Sbjct: 128 LKSAAKQIIQLAIDNRIMDYNPAVNVKIPKKTELSDRRALTEEERQ-----WIVDTPDFM 182

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-----------------V 235
           + A   + ++GLR  +        +  +  +I   K   +I+                 V
Sbjct: 183 QTAAMIMTFAGLRRGELVALLWTDIDLDKQTITVSKAAEVISGRFTVKPMTKTEAGMRIV 242

Query: 236 ELPDGFMKLLAMTPIGKETFFINN--DKQKMNATQFSIW-------------FKAKATKA 280
            +P      L         +             T    W             F +   K 
Sbjct: 243 YIPSLLADYLRSVKRSNSLYVCPAPEGGHFYTKTWNRKWDSYLNKLNRKYGDFSSFIVKE 302

Query: 281 G------VNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLG 332
           G      + + + H  R    T+   AG          G   +      YT    R +  
Sbjct: 303 GEDPPFVIPRFTPHWCRHTFITMLYLAGIDVLTAKEQAGHNDIRTTMSIYTHLDSRYK-- 360

Query: 333 IKNSRRISSVVDS 345
            K+  ++   +++
Sbjct: 361 QKSMNKLDEYLNN 373


>gi|187939698|gb|ACD38841.1| phage integrase family protein [Pseudomonas aeruginosa]
 gi|187939776|gb|ACD38917.1| site-specific recombinase [Pseudomonas aeruginosa]
          Length = 355

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 45/291 (15%), Positives = 91/291 (31%), Gaps = 33/291 (11%)

Query: 3   PSLR-LPPFVTKE--RTRHGKII--YYF--RKGHGRRIRLPYPHESTFIPAYMSALTGST 55
           P  R LPP + +   + + G++   YY+  R   G+R  +P   +        + L  S 
Sbjct: 6   PKNRDLPPRMIRRIRKLKGGRLWVGYYYDGRGEDGKRKEIPLGTDLDLAKLEWARLDASP 65

Query: 56  PKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT 115
             +               +   Y K       A  ++        Q+ +   +     +T
Sbjct: 66  APKTLRK--------WGDVFDRYEKEII-PGKAPRTQKDNLLSLTQLRKAFSEAPVEALT 116

Query: 116 TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI-NPCLSVERPKRKTEGIRPW 174
            + +    + R      A + L+    +F  A     V   NP   V + +         
Sbjct: 117 PQVLAQYRDKRSAKVR-ANRELSLFSHIFNIAREWGIVTAENPVKGVRKNRETPRDFYA- 174

Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234
            + ++     + +   + R A +    +  R SD        +Q+    I   KT   + 
Sbjct: 175 -RAEVWN-AVYGAAPPELRDAMDLAYLTAQRPSDVLIIREADIQDGHLQIAQSKTSKKLR 232

Query: 235 VEL-----PDGFMKLLAMT-------PIGKETFFINNDKQKMNATQFSIWF 273
           + L     P    +L+A          +         D ++M ++   I F
Sbjct: 233 IMLDVDGSPTALGELVARLCEQRRQRGVAGPYLITTPDGRRMTSSMLRIRF 283


>gi|311742022|ref|ZP_07715832.1| phage integrase family protein [Aeromicrobium marinum DSM 15272]
 gi|311314515|gb|EFQ84422.1| phage integrase family protein [Aeromicrobium marinum DSM 15272]
          Length = 372

 Score = 85.9 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 47/279 (16%), Positives = 91/279 (32%), Gaps = 36/279 (12%)

Query: 106 SGDFDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163
             D   + +   HI + V++      P++       +R +F+ A+    + ++PC+ V  
Sbjct: 91  FADVPLKLVRRSHIEAWVKTMSTRLAPTTIKTRFVIVRSVFRAAIADRVIVVDPCVGVTL 150

Query: 164 PKRKTEGI--RPWTKEDMQQFKSFWSEGSQP-----RLAFEFLLYSGLRCSDSCRAGVQH 216
           P+R+      +  T E++ +  +             R       ++GLR  ++    V  
Sbjct: 151 PRRRKAEATMQIPTMEEVGRLLAHADSNRASTRKGFRAYVAMCAFAGLRKGEAAGVQVGD 210

Query: 217 LQ---------------NNIFSIKTQKTGTIITVELPDGFMKLLAM-----TPIGK-ETF 255
           +                 N F  +  K G+   + LP   ++ LA       P    E +
Sbjct: 211 IDHVRGLLKVSRQLQREGNTFVTRLPKYGSERGIFLPVELVETLADHIATYLPNADPEAW 270

Query: 256 FINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWK 314
                 + M+       ++A    A +     H +R F A+    AG     +    G  
Sbjct: 271 LFTVGDRPMSDNDIHWRWRATRASAKLPHVRLHDLRHFYASGLIAAGCDVVTVQRALGHA 330

Query: 315 TVDQA-ETYTK----GADRIRLGIKNSRRISSVVDSDDP 348
                  TY+       DR R       R +  +    P
Sbjct: 331 AATTTLNTYSHLWPTAEDRTRAAASGLMRQALGIAPPTP 369


>gi|257084908|ref|ZP_05579269.1| phage integrase [Enterococcus faecalis Fly1]
 gi|256992938|gb|EEU80240.1| phage integrase [Enterococcus faecalis Fly1]
          Length = 397

 Score = 85.9 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 52/375 (13%), Positives = 113/375 (30%), Gaps = 68/375 (18%)

Query: 13  KERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           K+   +G++ +YF+     R        +     Y+        +++   +      T +
Sbjct: 9   KKIAANGQVTWYFQAFRTTRRGFKSKRAAQL--EYLKMKKQQKERKKVRKNTIDFNPTFQ 66

Query: 73  WLISEYRKSAHWGSLAVNSRISFES---YFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
            +  ++ +   + SL    R +++        + R  G+ +   + + ++   +   K  
Sbjct: 67  EISDQWFEY--YRSLNEQKRATYDKKKEILKTLNRWIGEKELEALDSDYLEELLFVLKER 124

Query: 130 ------PSSAIQFLTSMRV----LFKWAVRQEYVAINPCLSVERPKRKTEGIRP------ 173
                    A   L ++R     +FK+ V+++ +  NP   V  PK +            
Sbjct: 125 GIDGESKGYAKNSLQALRQTLNLIFKYCVKKKILHKNPMEGVRFPKYQKTVEELKQSLYS 184

Query: 174 -----WTKEDMQQFKSFWSEG--SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---NNIFS 223
                 TK+++Q   ++            F  L Y+G R  ++     Q +    N I  
Sbjct: 185 VNQKYLTKDELQTVLNYAIVNEDLPMSTLFHVLFYTGCRIGEALAIQPQDIDFENNEILF 244

Query: 224 IKTQKTGTI-------------------ITVELPDGFMKLLAMT---------PIGKETF 255
            K     +                    +T  L +   +L+             I +   
Sbjct: 245 FKQISKSSKAKDFTVETTKTVSSARRVVVTAFLMEKLKRLIHYLEEMKKTISFQIEEPYL 304

Query: 256 FI----NNDKQKMNATQFSIWFKAKATKAGVNKSAHG--VRKFSATISADAGATAHELMA 309
           F+                +   K    ++G+NK  H    R    T    +  +   L  
Sbjct: 305 FVYLGEGKQGIPFRRDYVNTHIKRCVARSGINKPFHTHLTRHT-MTSLCASYCSWDVLKE 363

Query: 310 TYGWKTVDQAETYTK 324
             G      +E Y  
Sbjct: 364 RLGHTDKSTSEIYRH 378


>gi|301047134|ref|ZP_07194231.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 185-1]
 gi|300300956|gb|EFJ57341.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 185-1]
          Length = 390

 Score = 85.9 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 52/359 (14%), Positives = 122/359 (33%), Gaps = 39/359 (10%)

Query: 22  IYYFRKGHGRRIRLPYPHE----------STFIPAYMSALTGSTPKREYINSPRKKPT-- 69
            Y +R    R   +   +              I A      G +P     +  +K     
Sbjct: 10  RYDYRINGRRETLVIGQYGRDGISLAEAREELIAAKKLLKAGQSPAAAKRDGIKKIRGAE 69

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVES--R 126
           T       Y K      LA ++R   ++  D+ I+   G+    +ITT  +R   +    
Sbjct: 70  TFAVHTDSYMKHVI---LADSTRAMKQAVIDRDILPVLGNKMMAEITTSMVRDLCDRIVE 126

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE--RPKRKTEGIRPWTKEDMQQF-K 183
           +   ++A+Q    +  +++ A  + +   NP   ++           R  T E++  F +
Sbjct: 127 RGGRATAVQAREIISSVYRHANDRGHGLFNPAADIKPSSIAIFKPRERTLTPEEIGLFFR 186

Query: 184 SFWSEGSQ--PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIITVEL 237
           +  + G+    ++A + +L + +R  +   A    +    ++        K      + L
Sbjct: 187 TLDAIGAMGTMKMALKLVLITMVRKGEFTNATWDEIDFKKWTWTIPSDRMKGSRAHVIYL 246

Query: 238 PDGFMKLLAMTP--IGKETFFI---NNDKQKMNATQFSIWFKAKATKAGVNK------SA 286
           P     +L       G   + +    N ++ ++    +            +       + 
Sbjct: 247 PKQAQDILVGLQMCAGGSEYLVPGRYNFRKPLSNAALNSLIDRTVKIINEDGEHIQDFTV 306

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345
           H +R+ ++T+  +AG  +  +      +       Y K A+  R      ++ + ++DS
Sbjct: 307 HDMRRTASTLLHEAGYPSDWIEKALAHEQKGVRAVYNK-AEYARQRAYMLQQWADMIDS 364


>gi|282861525|ref|ZP_06270589.1| integrase family protein [Streptomyces sp. ACTE]
 gi|282563341|gb|EFB68879.1| integrase family protein [Streptomyces sp. ACTE]
          Length = 435

 Score = 85.9 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 54/391 (13%), Positives = 115/391 (29%), Gaps = 78/391 (19%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEY 78
           G      R     R               ++ LT                 ++   ++ +
Sbjct: 39  GNTRKRVRVYGTTRT------------EALAKLTEKIATSNRGVPVPSAQGSVSAYLTYW 86

Query: 79  RKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHT-------- 129
            ++     L  N+   + +  +  +I   G     K+T K +R+ +   + T        
Sbjct: 87  LEAVAVHQLRENTHTRYTTCVNQHLIPGLGKKKLAKLTAKDVRTWLNQLRTTCQCSVRAI 146

Query: 130 ---------------------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168
                                P +     + ++   + AVR+E +  N   +V     + 
Sbjct: 147 DAHRDQPRCCAAGTCCSKRLSPLTLAYIHSVLKSALEHAVREEEITRNVARNVRTGTPRP 206

Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---------- 218
               P T ++ +QF +      +    +E  L +GLR  +      + L           
Sbjct: 207 RRFEPLTADEARQFLAAV-RNDRLFALYELALRAGLRKGELLGLQWKDLDLHNGTASIRR 265

Query: 219 -------NNIFSIKTQKTGTIITVELP--------------DGFMKLLAMTPIGKETFFI 257
                    + ++ T+   +   + LP              +G  K  A         F 
Sbjct: 266 TLQRTQTGGLTALPTKTRASERRIALPSECIHSFKEHRAVQEGERKAAAEGWKDNGLVFR 325

Query: 258 NNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTV 316
            +    ++    +  F     +AG+ +   H +R  +AT+  + G     +    G   +
Sbjct: 326 TSAGGPIDPANLNRSFHTLLERAGLRRIRFHDLRHSTATLLLEQGVELVVIKELLGHAHI 385

Query: 317 D-QAETYTKGADRIRLGIKNSRRISSVVDSD 346
              A  Y     R+RL  +    +SS +   
Sbjct: 386 GVTATVYAHV--RLRLQRQAVETLSSTLAGP 414


>gi|91975033|ref|YP_567692.1| site-specific tyrosine recombinase XerC [Rhodopseudomonas palustris
           BisB5]
 gi|91681489|gb|ABE37791.1| tyrosine recombinase XerC subunit [Rhodopseudomonas palustris
           BisB5]
          Length = 329

 Score = 85.9 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 40/280 (14%), Positives = 89/280 (31%), Gaps = 35/280 (12%)

Query: 85  GSLAVNSRISFESYFDQ-IIRKSGD-------FDYRKITTKHIRSGVESRKHTP---SSA 133
             L+  +  ++     Q +I  +G          + ++    +R+ + +R+       S 
Sbjct: 41  RRLSGKTLEAYARDLRQFLIFLAGHWGGVVTLGRFARLEATDVRAFMAARRGDAIAGRSL 100

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
           ++ L  +R   ++  R+   ++    SV  PK K    +P      ++         + R
Sbjct: 101 MRALAGLRSFGRFLEREGKGSVGALSSVRAPKIKKSLPKPIQIAAAKRLADADERAGEDR 160

Query: 194 ---------LAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTI-------I 233
                         L  SGLR S++     + +    + +   +  +   T        +
Sbjct: 161 ETWILVRDAAVMALLYGSGLRISEALGLRRRDVPAPGKGDTLIVLGKGNKTRMVPVLQNV 220

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRK 291
             ++ D         P     F +      ++     +  +      G+    + H +R 
Sbjct: 221 LAQIADYASACPHPLPPDGPMF-VGARGGPLSPRIIQLAMERLRGSLGLPDSATPHALRH 279

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
             AT     G     +    G  ++   + YT G D  RL
Sbjct: 280 SFATHLLTRGGDLRAIQELLGHASLSTTQVYT-GIDTERL 318


>gi|167036524|ref|YP_001664102.1| phage integrase family protein [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|320114956|ref|YP_004185115.1| integrase family protein [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
 gi|166855358|gb|ABY93766.1| phage integrase family protein [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|319928047|gb|ADV78732.1| integrase family protein [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
          Length = 403

 Score = 85.9 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 57/359 (15%), Positives = 120/359 (33%), Gaps = 64/359 (17%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT-TLKWLISEYRKSAHWGS 86
           G+G+R       E          L     + +    P  +   T+K  + ++ ++    S
Sbjct: 27  GNGKRKYYIETIECKNKAEAQKYLAKKIVEYDTGTLPIDETNITVKDYLKKWLETKK-SS 85

Query: 87  LAVNSRISFESYFD-QIIRKSGDFDYRKITT---KHIRSGVESRKHTPSSAIQFLTSMRV 142
           LA+ +   +E      I    G++   K+T    +++ + +  +  +  +     T +  
Sbjct: 86  LALKTYNDYEQKIRLYINPAIGNYKLLKLTPLIIQNMYNNMLEQGLSARTIRYTHTVLNE 145

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202
             K A++ + +  NPC     PK+  + ++  T E  ++F       ++  + FE LL S
Sbjct: 146 ALKQAIKWQMLRYNPCDGTTLPKQAKKEMKVLTPEQAKKFLEAC-VYNRWGILFELLLIS 204

Query: 203 GLRCSDSCRAGVQHLQ--NNIFSIKTQ-------------KTG-TIITVELPDG----FM 242
           G+R S++     + +   NN  +++               KT  +  T+ LP        
Sbjct: 205 GMRPSEALGLKWEDIDWKNNRIAVQRTLTRVKNNWQLKEPKTPQSRRTIPLPREVMNDLK 264

Query: 243 KLLAMTPIGKE----------------------------------TFFINNDKQKMNATQ 268
           +        K                                     F     + ++   
Sbjct: 265 EHRKQQSKEKLKAKEYINYDKDKNKFKPEEWEEKLKDPKVYVDYGLVFATETGRPLDLAN 324

Query: 269 FS-IWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTK 324
            +  +FK     AG+ N   + +R   AT+   AG     +    G   +    +TY+ 
Sbjct: 325 INYQYFKPLLKNAGLPNIRLYDLRHTCATLLLLAGENPKVVSERLGHANITLTLDTYSH 383


>gi|298381746|ref|ZP_06991345.1| site-specific recombinase [Escherichia coli FVEC1302]
 gi|298279188|gb|EFI20702.1| site-specific recombinase [Escherichia coli FVEC1302]
          Length = 416

 Score = 85.9 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 52/359 (14%), Positives = 122/359 (33%), Gaps = 39/359 (10%)

Query: 22  IYYFRKGHGRRIRLPYPHE----------STFIPAYMSALTGSTPKREYINSPRKKPT-- 69
            Y +R    R   +   +              I A      G +P     +  +K     
Sbjct: 38  RYDYRINGRRETLVIGQYGRDGISLAEAREELIAAKKLLKAGQSPAAAKRDGIKKIRGAE 97

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVES--R 126
           T       Y K      LA ++R   ++  D+ I+   G+    +ITT  +R   +    
Sbjct: 98  TFAVHTDSYMKHVI---LAESTRAMKQAVIDRDILPVLGNKMMTEITTSMVRDLCDRIVE 154

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE--RPKRKTEGIRPWTKEDMQQF-K 183
           +   ++A+Q    +  +++ A  + +   NP   ++           R  T E++  F +
Sbjct: 155 RGGRATAVQAREIISSVYRHANDRGHGLFNPAADIKPSSIAIFKPRERTLTPEEIGLFFR 214

Query: 184 SFWSEGSQ--PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIITVEL 237
           +  + G+    ++A + +L + +R  +   A    +    ++        K      + L
Sbjct: 215 TLDAIGAMGTMKMALKLVLITMVRKGEFTNATWDEIDFKKWTWTIPPDRMKGSRAHVIYL 274

Query: 238 PDGFMKLLAMTP--IGKETFFI---NNDKQKMNATQFSIWFKAKATKAGVNK------SA 286
           P     +L       G   + +    N ++ ++    +            +       + 
Sbjct: 275 PKQAQDILVGLQMCAGGSEYLVPGRYNFRKPLSNAALNSLIDRTVKIINEDGEHIQDFTV 334

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345
           H +R+ ++T+  +AG  +  +      +       Y K A+  R      ++ + ++DS
Sbjct: 335 HDMRRTASTLLHEAGYPSDWIEKALAHEQKGVRAVYNK-AEYARQRAYMLQQWADMIDS 392


>gi|227544984|ref|ZP_03975033.1| integrase [Lactobacillus reuteri CF48-3A]
 gi|300909983|ref|ZP_07127443.1| tyrosine recombinase XerC [Lactobacillus reuteri SD2112]
 gi|227185045|gb|EEI65116.1| integrase [Lactobacillus reuteri CF48-3A]
 gi|300892631|gb|EFK85991.1| tyrosine recombinase XerC [Lactobacillus reuteri SD2112]
          Length = 362

 Score = 85.9 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 35/261 (13%), Positives = 85/261 (32%), Gaps = 26/261 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HTPSSAIQFLTSMRV 142
            SL+  ++  + ++   I     D     I     +  +      H  SS  +   ++R 
Sbjct: 76  SSLSDITKSRYRTFSKTIADYFKDTKLVNIKRSTYQQFINWYGANHAFSSVSKLNGAIRA 135

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRP--WTKEDMQQFK----SFWSEGSQPRLAF 196
              +A+  + +A +   +V+    +    +    T ++++  K    +  +  +  R   
Sbjct: 136 CVSYAIDDDIIAKDFTHNVQLVYNEDNQTKVEYLTNKEIKSLKKAVVANLNHYNTSRYMI 195

Query: 197 EFLLYSGLRCSDSCRAGVQHL-------------QNNIFSIKTQKT-GTIITVELPDGFM 242
              +Y+G+R S+        +              +   + KT KT  +  T+++    +
Sbjct: 196 LTAIYTGMRKSEIQALTWNDIDFLHSTIAITKSWDDAKKAFKTTKTESSQRTIKVNRQLL 255

Query: 243 KLLAMTPIGKET-FFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISA 298
             LA       T  F N       +   +   ++  ++ G+ K     H +R        
Sbjct: 256 NRLAELKANNTTMVFQNVLGTIPTSNALNKCLRSIMSECGIEKQGFHFHSLRHVHVAYLL 315

Query: 299 DAGATAHELMATYGWKTVDQA 319
             G   + +    G   +   
Sbjct: 316 SKGVDIYAISKRLGHSNITIT 336


>gi|188495908|ref|ZP_03003178.1| site-specific recombinase, phage integrase family [Escherichia coli
           53638]
 gi|188491107|gb|EDU66210.1| site-specific recombinase, phage integrase family [Escherichia coli
           53638]
          Length = 412

 Score = 85.9 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 56/367 (15%), Positives = 117/367 (31%), Gaps = 38/367 (10%)

Query: 16  TRH---GKIIYYF--RKGHGRRI---RLPYPHESTFI-----------PAYMSALTGSTP 56
            RH   G + +YF  R G GR++   RL   +                 A+++       
Sbjct: 35  VRHSTNGLLTWYFTYRAGTGRQVSPERLRLGNYPDLSLKAAREKAAQCRAWLAEGKNPRY 94

Query: 57  KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT 116
           +          P T+K  ++ + +S        +           II + G     K   
Sbjct: 95  ELNRAVQDTLAPVTVKEALTYWLESYA-KEKRTDYESLKSRINKHIISQIGAMPLEKCEL 153

Query: 117 KHIRSGVESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV---ERPKRKTEGIR 172
           +H  +  +   K +P SA   L   +   K+  ++ Y   N    +   +  K+     R
Sbjct: 154 RHWLACFDQMAKRSPVSAGFLLQVCKQALKYCRKRRYAISNVLDDMVVGDVGKKAEVSER 213

Query: 173 PWTKEDM-QQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT--- 226
             T +++ +  +    +   P        L+  G R ++  R+ VQ              
Sbjct: 214 VLTNKELGELLRVLDDKIFPPYYSALIRLLIVFGCRTTELRRSEVQEWDFKEMLWTVPKE 273

Query: 227 -QKTGTIITVELPDGFMKLLAMTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGVN 283
             KT   I   +P+  +  +             +   K + +  ++      +  +A   
Sbjct: 274 HSKTKVAIFRPIPESILPFVTQLVEQNRHTGLLLGELKGQSSVAEYGRTAHRRINQA--P 331

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY--TKGADRIRLGIKN-SRRIS 340
            + H +R    T+  D G   H +      +       Y  ++  D  R  +     R+ 
Sbjct: 332 WTLHDIRHTFTTMLNDLGVDPHIVEQLTAHQMPGMQRVYNHSRYLDAKRDALNLWVERLE 391

Query: 341 SVVDSDD 347
            + ++D+
Sbjct: 392 LLQNNDE 398


>gi|163855344|ref|YP_001629642.1| tyrosine recombinase xerD [Bordetella petrii DSM 12804]
 gi|163855612|ref|YP_001629910.1| putative integrase/recombinase [Bordetella petrii DSM 12804]
 gi|163259072|emb|CAP41371.1| Tyrosine recombinase xerD [Bordetella petrii]
 gi|163259340|emb|CAP41640.1| putative integrase/recombinase [Bordetella petrii]
          Length = 349

 Score = 85.9 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 49/314 (15%), Positives = 105/314 (33%), Gaps = 45/314 (14%)

Query: 66  KKPTTLKWLISEYRKS--AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
           ++PT   + +S++     A    ++ N+  S+   F  ++R        KI    I    
Sbjct: 5   RQPTDFAYALSKFLGEHLAAHRGMSANTVASYRDTFSILLRFMEHQAGVKIERICIADLH 64

Query: 124 ES------------RKHTPSSAIQFLTSMRVLFKWAVR--QEYVAINPC---LSVERPKR 166
                         R ++ ++  Q L+++   F++ +    E++ +  C   L+++  KR
Sbjct: 65  HKQIQAFLLWLEQDRGNSVNTRNQRLSAITSFFRFVMSIYPEHILL--CQQILNIQFKKR 122

Query: 167 KTEGIRPWTKEDMQ----QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NN 220
           ++  +   + E ++    Q  +    G +  +    L  +G R  +     V  L+    
Sbjct: 123 QSSTVDYLSIEAVELLLQQPNARKPMGRRDLVLLSVLYDTGARVQELANMNVSDLKLTAP 182

Query: 221 IFSIKTQKTGTIITVELPDGFMKLLAM---------TPIGKETFFINNDKQKMNATQFSI 271
             +    K   +  V L      LL                   F NN ++++     S 
Sbjct: 183 ATARLLGKGAKVRLVPLLAPTTALLVSYLQEHHGQYLEQKDRPLFCNNVRKRLTRAGISY 242

Query: 272 WFKAKATK--------AGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
             +  A +         G   S H +R   A     AG     +    G   +   E Y 
Sbjct: 243 ILQKYAREVSQGNPGLLGTKISPHTLRHSKAMHLLQAGVNLIYIRDLLGHSDIKTTEIYA 302

Query: 324 KG-ADRIRLGIKNS 336
           +   D  +  ++ +
Sbjct: 303 RADLDSKKAALEMA 316


>gi|116513206|ref|YP_812113.1| integrase [Lactococcus lactis subsp. cremoris SK11]
 gi|116108860|gb|ABJ74000.1| Integrase [Lactococcus lactis subsp. cremoris SK11]
          Length = 349

 Score = 85.9 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 32/276 (11%), Positives = 82/276 (29%), Gaps = 26/276 (9%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
           K+  T       +  +     +   +  ++      +     D     +    ++  ++ 
Sbjct: 56  KREDTFSDFFDTWVNTVKRNDVRPATFTNYVRTVTIVRSLFKDIKISNLDDLVVQMKIDE 115

Query: 126 --RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQQF 182
             + H+  +  + L  +R    +A  +  +  +    V+ R K   +  +P +  +M+  
Sbjct: 116 YGKNHSRKTTTEVLLKIRTALHYAYARGLLDNDFGSLVKTRGKELEKRNKPLSINEMKVL 175

Query: 183 KSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ----------KT- 229
           +++    S+    +     L +G R  +      + + +N   I             KT 
Sbjct: 176 RNYLLSHSEDEFNIITLIALETGARRGEILGLKPEDISSNGIHITRSISPTNDDTRLKTS 235

Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--- 286
            +  TV +      ++         +         +   F    + K   A +  S    
Sbjct: 236 KSKRTVPITYEVYTIIRSVEPKSNGYL-------FDPDGFQQSKRLKKLLAELKISITTF 288

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           HG+R   A+           +    G   +     Y
Sbjct: 289 HGLRDTIASFLFSNDIRLDYVSKMLGHSNLQTTMNY 324


>gi|265994586|ref|ZP_06107143.1| phage integrase [Brucella melitensis bv. 3 str. Ether]
 gi|262765699|gb|EEZ11488.1| phage integrase [Brucella melitensis bv. 3 str. Ether]
          Length = 313

 Score = 85.9 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 36/239 (15%), Positives = 81/239 (33%), Gaps = 12/239 (5%)

Query: 93  ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEY 152
            SF    D+I++ +    + +     I   +  R ++ ++  + + ++  L + A +   
Sbjct: 68  RSFLGEIDEILKGARFSGFDQEMLDSIIGTLRERGNSNATINRKMAALSKLLRKAHKMGD 127

Query: 153 VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY-SGLRCSDSCR 211
           +  N    + R K +   IR   +E+ ++  +      +        L  +G R  ++  
Sbjct: 128 I-FNLPEFI-RQKERVGRIRFLEQEEEKRLFAAIKSRCEDSYRLSVFLVDTGCRLGEAIG 185

Query: 212 AGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI 271
                +Q    +    K+    TV L     K   + P  +    +      +N  +F  
Sbjct: 186 LTWNDIQEQRVTFWVTKSNRSRTVPLTRRARKASHI-PRER----LKGPFSMLNQVRFRQ 240

Query: 272 WFKAKATKAGVNKS----AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            +     +AG+        H +R   A+     G     +    G +T+     Y   A
Sbjct: 241 IWNEAKAEAGLGADDQIVPHILRHTCASRLVRGGIDIRRVQMWLGHQTLQMTMRYAHLA 299


>gi|224540990|ref|ZP_03681529.1| hypothetical protein CATMIT_00141 [Catenibacterium mitsuokai DSM
           15897]
 gi|224526089|gb|EEF95194.1| hypothetical protein CATMIT_00141 [Catenibacterium mitsuokai DSM
           15897]
          Length = 325

 Score = 85.9 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 43/254 (16%), Positives = 82/254 (32%), Gaps = 36/254 (14%)

Query: 106 SGDFDYRKITTKHIRSGVESRKHTPSSAIQ--FLTSMRVLFKWAVRQEYVAINPCLSVER 163
           +G     K+ TK +      RK   + A Q   ++ MRVL  + +   +    P   + R
Sbjct: 43  AGKNIQEKVITKSVVDEWCLRKTYETQANQKSRISMMRVLCSYLLELGFDVYVPPKGLIR 102

Query: 164 PKRKTEGIRPWTKEDMQQFKSF----------WSEGSQPRLAFEFLLYS-GLRCSDSCRA 212
             +K      +T +++++F                       F  +LY+ GLR S+   A
Sbjct: 103 KPQKYNA-HIYTDDELRRFFKAVDKSQSVPSECPYRHIIMPIFFRILYTSGLRVSELRLA 161

Query: 213 GVQ--HLQNNIFSIKTQKTGTIITVELPD-------GFMKLLAMTPIGKETFFINNDKQK 263
            ++  HL    F +K+ K      + +              + +     E FF+    + 
Sbjct: 162 KIEDFHLDEGYFIVKSGKNNKDRIIPIHPVLVKKCKELKSTIHIDSDESEYFFMKLPGKP 221

Query: 264 MNATQFSIWFKAKATKAGVNK-----SAHGVRKFSATISADAGATAHE--------LMAT 310
           +        F+    KAG++        H  R               +        +   
Sbjct: 222 LTLQCVYNNFRRYLDKAGISHNGRGPRVHDFRHTYCVNLLKKWVYEEKNLLVYLPYMKTM 281

Query: 311 YGWKTVDQAETYTK 324
            G ++ D+   Y K
Sbjct: 282 LGHESFDETAYYLK 295


>gi|170723696|ref|YP_001751384.1| integrase family protein [Pseudomonas putida W619]
 gi|169761699|gb|ACA75015.1| integrase family protein [Pseudomonas putida W619]
          Length = 473

 Score = 85.9 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 43/252 (17%), Positives = 85/252 (33%), Gaps = 22/252 (8%)

Query: 96  ESYFDQIIRKSGDFDYRKITTKHIRSGVES---RKHTPSSAIQFLTSMRVLF-KWAVRQE 151
              FD ++   GD  +  +T    R+ V++   R    +S  + L+++  +F ++A   E
Sbjct: 206 RRVFDGLMNVIGDKPFESVTRADARAYVDAELARGSATTSVRRRLSTIVAVFTRYAREHE 265

Query: 152 YVAINPCLSVERPK--RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY-SGLRCSD 208
               NP   ++       ++  +P+T E++Q+  +   E          +L  +G R ++
Sbjct: 266 LSRPNPFAELKIMGEGSDSKERQPFTPEELQRTVARCREKDDEPRWITAMLADTGARLAE 325

Query: 209 SCRAGVQHLQNNI----FSIKTQ-------KTGTIITVELPDGFMKLLAM----TPIGKE 253
                +  ++ +       I+         K    +   +               P    
Sbjct: 326 VVGLPLDDIRLDAEVPHIVIQEHPWRSLKNKDSKRVVPLVGASLWAAQRAVAGSLPGAVF 385

Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGW 313
            F      +  NA   S          GV  +AH +R   A    +         +  GW
Sbjct: 386 AFPKYTSAKGCNANSASATIAKWLRGQGVAHTAHELRHTMADRLREIQCPEDIRKSIGGW 445

Query: 314 KTVDQAETYTKG 325
            + D A  Y KG
Sbjct: 446 ASADVASRYGKG 457


>gi|50119495|ref|YP_048662.1| shufflon-specific DNA recombinase [Pectobacterium atrosepticum
           SCRI1043]
 gi|49610021|emb|CAG73461.1| shufflon-specific DNA recombinase [Pectobacterium atrosepticum
           SCRI1043]
          Length = 375

 Score = 85.9 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 32/242 (13%), Positives = 79/242 (32%), Gaps = 18/242 (7%)

Query: 95  FESYFDQIIRKSGDFDYRKITTKHIRSG--VESRKHTPSSAIQFLTSMRVLFKWA-VRQE 151
             S  D+ + +    D        +        +  + ++    +  +  L+  A V   
Sbjct: 40  RSSLADRYMDEVSSVDIASYRDDRLAQINPRTKKAISGNTVRLEMALLSALYNLAKVEWG 99

Query: 152 YVAINPCLSVERPKRKTEGIRPW-TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210
               NP  +V +P   +   R   ++E+ +  + F  +  +    F   + + +R  +  
Sbjct: 100 TCTTNPVENVRKPTVSSGRTRRLASQEERKIMRYFKGKNPELLAIFRLAVETAMRQGEIL 159

Query: 211 RAGVQHLQ--NNIFSIKTQKTGTIITVELP----DGFMKLLAMTPIGKETFFINNDKQKM 264
               +H+     I  +   K G+   V L     +    +  +      + F        
Sbjct: 160 SLRWEHIDLRLGIAHLPLTKNGSARDVPLSSKAREVLKDISELVRHECGSVF------SY 213

Query: 265 NATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETY 322
            ++ F   ++       + N   H +R  + +   +       E+ A  G K+++  + Y
Sbjct: 214 TSSGFKSAWRIALQSMSIENLHFHDLRHEAISRLFELDTLNVMEIAAISGHKSMNMLKRY 273

Query: 323 TK 324
           T 
Sbjct: 274 TH 275


>gi|312890652|ref|ZP_07750186.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
 gi|311296818|gb|EFQ73953.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
          Length = 409

 Score = 85.9 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 49/292 (16%), Positives = 101/292 (34%), Gaps = 26/292 (8%)

Query: 67  KPTTLKWL--ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
           +P T+K      +Y K   +  +   +   + S      +   DF+Y  +  +    G  
Sbjct: 128 EPGTMKNYYTTEKYLK--EFLKVRFKTSDKYLSELSY--KFITDFEY-YLRNRKPEKG-- 180

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINP--CLSVERPKRKTEGIRPWTKEDMQQF 182
            +K T +  ++ L     +   AVR E++  NP     ++  K   +     TK+++++ 
Sbjct: 181 QKKLTTNGLMKHLERFCKMVNMAVRLEWIVRNPFHAYQLKFDKVNRD---YLTKDELERI 237

Query: 183 KSFWSEGSQPRLA---FEFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIIT 234
           +S      + ++    F F  Y+GL   D       +L              QKT T + 
Sbjct: 238 ESKEFHIVRLQVVQDLFVFSCYTGLAYVDVYNLTPANLVKGQDGNLWIMTSRQKTNTAVK 297

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKF 292
           V L    ++++       +          +   + + + K  A    +    + H  R  
Sbjct: 298 VPLLPKALEIIDKYKGHPQAIAEGKLLPVLTNQKLNSYLKEIADMCAILKPLTFHIARHT 357

Query: 293 SAT-ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343
            AT I+   G     +    G   +   + Y K  +  +L    +R    + 
Sbjct: 358 FATTITLTNGVPIESVSKMLGHTKLSTTQVYAKVVE-SKLSDDMARLTERLR 408


>gi|227461196|gb|ACP39543.1| putative integron integrase [uncultured microorganism]
          Length = 319

 Score = 85.9 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 49/304 (16%), Positives = 94/304 (30%), Gaps = 58/304 (19%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----KHT 129
           L+ + R       LA+ +   + S+  + I  +G     ++  + +   +       K  
Sbjct: 20  LLDKVRARIRRRGLAIRTEDVYVSWIRRFILANGKRHPSEMGEREVEWFLTRLAVQGKVA 79

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            S+  Q L+++  L++  + Q+        ++ R KR        T E++ +     S  
Sbjct: 80  ASTQNQALSALLFLYREVLGQDLP---WMENIRRAKRPERLPVVLTIEEVSRLLVQMSGI 136

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELP----DGFMK 243
               L    L  SG+R  +  R  VQ +        ++  K G      LP         
Sbjct: 137 HH--LMASPLYGSGIRLMECVRLRVQDIDFVRREILVRRGKGGKDRRTMLPARAVPALQL 194

Query: 244 LLAMT--------PIGKETFFI---------------------------------NNDKQ 262
            LA T         +G  + ++                                    + 
Sbjct: 195 HLAQTRMLHERDLGVGHGSVWLPGALARKYPAAAREWIWQYVFPSRLRSVDPRSGVERRH 254

Query: 263 KMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
            ++        +  A  AG+ K A  H +R   AT   ++G+    +    G   V    
Sbjct: 255 HVDEKNLQRAVRIAAQAAGIAKHATCHTLRHSLATHLLESGSDIRTIQELLGHADVSTTM 314

Query: 321 TYTK 324
            YT 
Sbjct: 315 IYTH 318


>gi|218264265|ref|ZP_03478130.1| hypothetical protein PRABACTJOHN_03820 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222157|gb|EEC94807.1| hypothetical protein PRABACTJOHN_03820 [Parabacteroides johnsonii
           DSM 18315]
          Length = 413

 Score = 85.9 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 34/274 (12%), Positives = 96/274 (35%), Gaps = 36/274 (13%)

Query: 86  SLAVNSRISFESYFDQIIR------KSGDFDYRKITTKHIRSGVESRKHTP----SSAIQ 135
             +  +   +++   ++        +  D  + +++   I++     K       ++ ++
Sbjct: 130 DYSPVTINRYKNVLRKLETFVPRFYEKDDITFHELSPDFIKAFDVFLKTEAGLCRNTIVR 189

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WSEGSQP 192
           ++  ++ +   A+ +E++  +P    +  + +T+     T  ++Q   +           
Sbjct: 190 YMKCLKKITNMAIAKEWMRKDPFYGYKMEQDETD-PVFLTNNELQAIMNRNFDIPRLELV 248

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNN-----IFSI------KTQKTGTIITVELPDGF 241
           +  F F  ++GL  +D      +HL+ +               + +K+ +I  + L    
Sbjct: 249 KDIFLFACFTGLAFADVSTLKPEHLEQDNNGDWWIRKGRVKLERRRKSSSIANIPLLPVP 308

Query: 242 MKLLAMTPIGKETFFINNDKQKMNA---TQFSIWFKAKATKAGVNK--SAHGVRKFSATI 296
           + +L      +           +      + + + K  A   G+ K  + H  R   AT 
Sbjct: 309 LAILKKY---ESHPICLKQGTCLPVVCNQKANSYLKEIADFCGIKKNLTTHAARHTFATT 365

Query: 297 --SADAGATAHELMATYGWKTVDQAETYTKGADR 328
              A+      E+ A  G  +    + Y +  D+
Sbjct: 366 VTLANN-VPLQEVSAMLGHASTRMTQHYARVMDK 398


>gi|83313141|ref|YP_423405.1| integrase [Magnetospirillum magneticum AMB-1]
 gi|82947982|dbj|BAE52846.1| Integrase [Magnetospirillum magneticum AMB-1]
          Length = 381

 Score = 85.9 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 54/326 (16%), Positives = 106/326 (32%), Gaps = 25/326 (7%)

Query: 26  RKGHGRRIRLPYPHESTFIPAYMSALT--GSTPKREYINSPRKKPTTLKWLISEYRKSAH 83
           R G  +R ++      ++  A   AL   G   K     +  K+      L  E      
Sbjct: 50  RAGEEKRHKIGRSDVLSYDAARQEALRVLGEVQKGADPTAAIKQARQEGPLSEELVNWFD 109

Query: 84  WGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSG-VESRKHTPSSAIQFLTSMR 141
             ++  ++R ++ S  +  +I   G      IT   I +   + +  +   A Q +  + 
Sbjct: 110 SHTMKDSTRKTWRSVVNNHLIPALGSRKPSTITKADILAAYRDIQAKSGRQANQAIIILS 169

Query: 142 VLFKWAVRQEYVAINPCLSVE-----RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA- 195
             +      ++   NP          R  R  E     +++ ++   + + +    + A 
Sbjct: 170 TFYNRTTDGKF---NPASDFRNDKSIRKHRDAEREVVLSQDQVRALLADFDKSPAQQSAD 226

Query: 196 -FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ----KTGTIITVELPDGFMKLLAMTPI 250
               L Y+G R  +        +     +I       K     T+ L      +L     
Sbjct: 227 AARLLFYTGARIGEILALRWDAVNLTQGTITLAHTMTKEAKAKTLHLSPRAQAILERRQE 286

Query: 251 ----GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAH 305
               G E  F   D +  +      ++KA   + G+     H +R   +TI   +G +A 
Sbjct: 287 EALEGAEYVFPGRDGEA-HQVVIKAFWKAACKRCGIEGVHIHDIRATYSTILIASGESAK 345

Query: 306 ELMATYGWKTVDQAETYTKGA-DRIR 330
            +  T G         Y + A DR +
Sbjct: 346 AVGKTMGHADTKTTMRYERIAQDRAK 371


>gi|60681334|ref|YP_211478.1| putative phage integrase/recombinase [Bacteroides fragilis NCTC
           9343]
 gi|60492768|emb|CAH07542.1| putative phage integrase/recombinase [Bacteroides fragilis NCTC
           9343]
          Length = 305

 Score = 85.9 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 42/305 (13%), Positives = 105/305 (34%), Gaps = 40/305 (13%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR--- 126
            + +I  +R+      +  ++  ++    +  I+   G  D  +I    ++  V  +   
Sbjct: 4   FQEIIRLWREDKK-QYVKTSTISAYTLLIENHILPAFGKAD--RINEADVQEFVFEKLNS 60

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP-KRKTEGIRPWTKEDMQQFKSF 185
             +  S    L  ++++ K+ V+  Y      + ++ P +R+ + I   ++ + ++  S 
Sbjct: 61  GLSQKSIKDILIVLKMILKFGVKNGYFEYT-QIDIKFPTQRERQEIEVLSRSNHRKVISH 119

Query: 186 WSEGSQPR-LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-VELPDGFMK 243
             E    R L     L +G+R  + C    + +      I  +KT   +  +E  + + +
Sbjct: 120 IQENFTFRNLGIYICLCAGMRIGEICALKWEDIDTENGIISVKKTIQRVYMIEGEERYTE 179

Query: 244 LLAMTP-------------------------IGKETFFINNDKQKMNATQFSIWFKAKAT 278
           L+  +P                         +    F + N+ +      +  ++K    
Sbjct: 180 LILDSPKTKNSIRDIPMTRDLLKLLKPLKRIVNNNYFVLTNEAKPTEPRTYRNYYKQFMQ 239

Query: 279 KAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK--GADRIRLGIK 334
           + GV     HG+R   AT   ++      +    G   +      Y       + R   +
Sbjct: 240 EIGVPILKFHGLRHSFATRCIESKCDYKTVSVILGHSNISTTLNLYVHPNMEQKKRCIDQ 299

Query: 335 NSRRI 339
             + +
Sbjct: 300 MVKAL 304


>gi|320007186|gb|ADW02036.1| integrase family protein [Streptomyces flavogriseus ATCC 33331]
          Length = 548

 Score = 85.9 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 47/296 (15%), Positives = 96/296 (32%), Gaps = 37/296 (12%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKH 128
           T+   ++ +   A    L  ++   +  Y  + +I   G     ++  +HI + V S+  
Sbjct: 172 TVAAYLATWLA-AKALVLKPSTMARYRDYVRNDLIPAFGTLKLDQLANRHIAAFVTSQLA 230

Query: 129 ---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
                ++  + L ++      AVRQ+ +   P       +  +   R WT E+  +F + 
Sbjct: 231 VGCGRTTLYRCLATLSSALGDAVRQQRLPRTPASPPVLHRPPSPERRIWTAEEAARFLTH 290

Query: 186 WSEGSQPRLA-FEFLLYSGLRCSDSCRAGVQH----------------LQNNIFSIKTQK 228
             +        FE L+ +G+R  ++                       + NN   + T K
Sbjct: 291 CHQTDPEMADLFEVLIGTGMRKGEALGLHWNDVHLDQGVLYIRCTLSAVDNNRLVLTTPK 350

Query: 229 T-GTIITVELPDGFMKLLAMTPIGKE------------TFFINNDKQKMNATQFSIWFKA 275
           T  +   V +                              F   D + +           
Sbjct: 351 TRSSRGWVAISPRVAIAFRHRARSAPRAHGDADDPFAGLVFCRPDGRPLGPHLVLDRLHR 410

Query: 276 KATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRI 329
            + +AGV + + H +R  +ATI+  AG     +  T    T+      Y+    + 
Sbjct: 411 LSEEAGVPQVTVHDLRHLAATITISAGVPLTVVSKTLRHSTLSTTANLYSHLTQQA 466


>gi|257468514|ref|ZP_05632608.1| hypothetical protein FulcA4_04184 [Fusobacterium ulcerans ATCC
           49185]
 gi|317062774|ref|ZP_07927259.1| DNA integration/recombination/inversion protein [Fusobacterium
           ulcerans ATCC 49185]
 gi|313688450|gb|EFS25285.1| DNA integration/recombination/inversion protein [Fusobacterium
           ulcerans ATCC 49185]
          Length = 341

 Score = 85.9 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 39/241 (16%), Positives = 83/241 (34%), Gaps = 11/241 (4%)

Query: 94  SFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSM-RVLFKWAVRQEY 152
           SF+    +      +   + I    ++   +S K      +    S+   +F +A+++E 
Sbjct: 90  SFKKSLVKFFEPVYNTPIKDIKLAILQQLFDSNKSYSYGTLSLKKSLCIQIFDFALKREL 149

Query: 153 VAIN--PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210
           V  N    + + +   K    + +T +++ +       G Q       ++Y+GLR  +  
Sbjct: 150 VEKNYGILIDINKKNEKVIQRKIFTSDEIDKLWEL--SGIQDVDIILTMIYTGLRIGELL 207

Query: 211 RAGVQHLQ-NNIFSIKTQKT--GTIITVELP-DGFMKLLAMTPIGKETFFINNDKQKMNA 266
              +  +   + + I   KT  G    +         +       K   F +   +K+  
Sbjct: 208 ELKISSINLEDRYCIAGSKTEAGKDRLIPFNYRILPVITRYISTEKIYLFQSIRNKKIKY 267

Query: 267 T-QFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTK 324
           T   +  F     K  +  + H  R   A++ ++A A    +    G    D  E  YT 
Sbjct: 268 TNWRATKFIPLMEKIKMEHTIHDCRHTFASLLSNADANTTAIAKIIGHSNYDMTEKIYTH 327

Query: 325 G 325
            
Sbjct: 328 K 328


>gi|226325881|ref|ZP_03801399.1| hypothetical protein COPCOM_03694 [Coprococcus comes ATCC 27758]
 gi|225206005|gb|EEG88359.1| hypothetical protein COPCOM_03694 [Coprococcus comes ATCC 27758]
          Length = 576

 Score = 85.9 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 38/246 (15%), Positives = 74/246 (30%), Gaps = 20/246 (8%)

Query: 94  SFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAV--RQE 151
            F  Y D   +K  + + + I      S ++      S+  +++T M    ++      E
Sbjct: 302 QFLKYLDGQSKKVTELEIQDIE--GYVSVLDKSDIKYSTFNRYITHMHTFLQFLKMKNIE 359

Query: 152 YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-GSQPRLAFEFLLYSGLRCSDSC 210
            +   P   +++   +    R   ++ +              +L +  L  +G+R S+ C
Sbjct: 360 VLKFYPERFLKKGFTEHNE-RSVPEKTIAHLIKELPAFPEHLQLMYLILFCTGIRKSEVC 418

Query: 211 RAG----VQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM-----TPIGKETFFINNDK 261
                        N   I   K      + +P   + L+            E  F N   
Sbjct: 419 TIKSGAFYSQGNENWMRIYQSKMRREKVIPVPSLLVGLVNDYEKKYGIKNGEYLFKNKKG 478

Query: 262 QKMNATQFSIWFKAKATKAGVNK-----SAHGVRKFSATISADAGATAHELMATYGWKTV 316
              N   FS     +    G+        AH  R   AT     G +   +    G  + 
Sbjct: 479 GAFNGQTFSNQMIRECKVRGIACGDYIFRAHDYRHNLATSMYGNGVSIQGVRDYLGHSSE 538

Query: 317 DQAETY 322
           +  + Y
Sbjct: 539 NMTKQY 544


>gi|325277190|ref|ZP_08142833.1| phage integrase family protein [Pseudomonas sp. TJI-51]
 gi|324097676|gb|EGB95879.1| phage integrase family protein [Pseudomonas sp. TJI-51]
          Length = 414

 Score = 85.9 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 60/338 (17%), Positives = 122/338 (36%), Gaps = 23/338 (6%)

Query: 27  KGHGRRIRLPYPHESTFIPAYMSALTGSTP----KREYINSPRKKPTTLKWLISEYRKSA 82
           +  GRR  L    +   + A    + G  P    ++E +    +K  T + +  E+    
Sbjct: 75  RRKGRRFTLAEARDER-VKARALVIQGINPAHHRQQERVKRDHEKAITFEAVAKEWLSLK 133

Query: 83  HWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTS 139
            W  +   ++    +  +++   K GD   + IT  HI   + +  + + PS A +   S
Sbjct: 134 DWEEI---TKSRRLNMLERVVFPKIGDLPIKAITPVHILEVLRAATQDNGPSVAQEAKRS 190

Query: 140 MRVLFKWAVRQEYVAINPCLSVER--PKRKTEGIRPWTKEDMQQF-KSFWSEGSQP--RL 194
           M  +F+ A+     + +P   V +  P  KT+  RP + E++ Q  +   S G +     
Sbjct: 191 MSGVFELAISTLRASTDPVHPVRKALPANKTQHKRPLSTEEIGQLLRDVESHGGRHETLC 250

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIITVELPDGFMKLLAMTP- 249
           AF+ +  +  R +++  A            +      K     TV LP   +++L     
Sbjct: 251 AFQLMWLTLCRPNEAVEAQWAEFDLEKALWRIPAERMKKRKDHTVPLPRQAVEILRGLHS 310

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHEL 307
           I  +   +   +        +  F+      G     S H  R   +T   + G +A  +
Sbjct: 311 ITGKYTHVFPHRDVRTRPMVAASFRQMLNTLGWGGKYSPHATRTTGSTRLNEMGYSADWI 370

Query: 308 MATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345
                    +        A+ +       +R + ++DS
Sbjct: 371 ERQLAHTEQNAVRRTYNHAEYLSDRAMMMQRWADMLDS 408


>gi|323969634|gb|EGB64921.1| phage integrase [Escherichia coli TA007]
          Length = 412

 Score = 85.9 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 58/368 (15%), Positives = 122/368 (33%), Gaps = 40/368 (10%)

Query: 16  TRH---GKIIYYF--RKGHGRRI---RLPYPHESTFI-----------PAYMSALTGSTP 56
            RH   G + +YF  R G GR++   RL   +                 A+++       
Sbjct: 35  VRHSTSGLLTWYFTYRAGTGRQVSPERLRLGNYPDLSLKAAREKAAQCRAWLAEGKNPRH 94

Query: 57  KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKIT 115
           +  +       P T+K  ++ + +S  +         S +S  +  II + G     K  
Sbjct: 95  ELNHTVQEALAPVTVKDALTYWLES--YAKEKRTDHESLKSRINKHIISQIGAMPLDKCE 152

Query: 116 TKHIRSGVESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV---ERPKRKTEGI 171
            +H  +  +   K  P SA   L   +   K+  ++ Y   N    +   +  K+     
Sbjct: 153 LRHWLACFDQLAKRNPVSAGFLLQVCKQALKYCRKRRYAVSNVLDDMVVGDVGKKAEISE 212

Query: 172 RPWTKEDM-QQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-- 226
           R  T +++ +  ++   +   P        L+  G R ++  R+ V+             
Sbjct: 213 RVLTNKELGELLRALDEKIFPPYYSALIRLLIVFGCRTTELRRSEVREWDFKEMLWTVPK 272

Query: 227 --QKTGTIITVELPDGFMKLLAMTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGV 282
              KT   I   +P+  +  +             +   K + +  ++      +  +A  
Sbjct: 273 EHSKTKVAIFRPIPEAILPFVMKLVEQNRHTGLLLGELKGQSSVAEYGRTAHRRINQA-- 330

Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY--TKGADRIRLGIKN-SRRI 339
             S H +R    T+  D G   H +      +       Y  ++  D  R  +     R+
Sbjct: 331 PWSLHDIRHTFTTMLNDLGVDPHIVEQLTAHQMPGMQRVYNHSRYLDAKRDALNLWVDRL 390

Query: 340 SSVVDSDD 347
             + ++D+
Sbjct: 391 ELLQNNDE 398


>gi|320653064|gb|EFX21258.1| putative defective integrase; Qin prophage [Escherichia coli O55:H7
           str. 3256-97 TW 07815]
          Length = 264

 Score = 85.9 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 37/233 (15%), Positives = 73/233 (31%), Gaps = 46/233 (19%)

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196
           +T++  +F++ V   Y+A NP   +   K       P ++E+  +         Q +  +
Sbjct: 1   MTNLNAVFQFGVDNGYLADNPFKGISPLKESRTIPDPLSREEFIRLIDAC-RNQQAKNLW 59

Query: 197 EFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK-------------TQKTGTIITV--ELPD 239
              +Y+G+R  + C  G + +   N    I+                T  +I +     D
Sbjct: 60  CVSVYTGVRPGELCALGWEDIDLKNGTMMIRRNLAKDRFTVPKTQAGTNRVIHLIKPAID 119

Query: 240 GFMKLLAMTPIGKETFF--------------------------INNDKQKMNATQFSIWF 273
                + +T + KE                             + N             +
Sbjct: 120 ALRSQMTLTRLSKEHIIDVHLREYGRTEKHKCTFVFQPEVSARVKNYGDHFTVDSIRQMW 179

Query: 274 KAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
            A   +AG+ ++ ++  R   A  S  AGA    +    G        + Y K
Sbjct: 180 DAAIKRAGLRHRKSYQSRHTYACWSLTAGANPAFIANQMGHADAQMVFQVYGK 232


>gi|295099124|emb|CBK88213.1| Site-specific recombinase XerD [Eubacterium cylindroides T2-87]
          Length = 398

 Score = 85.9 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 58/377 (15%), Positives = 112/377 (29%), Gaps = 71/377 (18%)

Query: 12  TKERTRHGKIIYYFRKGH--GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
               T+ G + Y  R     G+R+ L              A       +    +P     
Sbjct: 11  YSSTTKKGVLYYRTRITDADGKRVDLYATTCEELYKKETEARRIIEELKFRRENPTVAEY 70

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFE-SYFDQIIRKSGDFDYRKITTKHIR-SGVESRK 127
             KWL+ +   SA    ++  +   +  S  + I++  GD     +T+  IR + + + +
Sbjct: 71  CEKWLLMQ---SAK---VSSATLKGYTCSVNNYIVKPLGDMYMSDVTSDDIRVALIPASQ 124

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQQFKSFW 186
            + S   +     + +F  A R E +  NP  S+  +     +     T E ++      
Sbjct: 125 KSASVYNKVNMLFKCIFYSAERSELLDYNPSASISAKGGTPAKDKDALTDEQVKVLLDTV 184

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQ--------------K 228
            E   P L     LYSGLR  +        +    +    +++                K
Sbjct: 185 RE-LPPYLFIMIGLYSGLRREEILGLQWDCVFLDTRTPYIAVRRAWRTEHNRPVVSTVLK 243

Query: 229 TG-TIITVELPDGFMKLLAMTPIG--KETFFINNDKQKMNATQFSIWFK----------- 274
           T      + +P   +  L  T      +    ++  + +  +QF   +K           
Sbjct: 244 TPAAQRDIPIPKCLVDCLLETKKSSISDYVIADSKGEPLAYSQFQRLWKYVTVRSTKERT 303

Query: 275 ------------AKATKAGVNK--------------SAHGVRKFSATISADAGATAHELM 308
                        K    G ++              + H +R    T    AG     + 
Sbjct: 304 CYKVINGQRIKYTKKPALGTHQKNNPSIVYTMDFEVTPHQLRHTYITNLLYAGVDPKTVQ 363

Query: 309 ATYGWKTVDQA-ETYTK 324
              G +      + Y K
Sbjct: 364 YLAGHENSKTTMDIYAK 380


>gi|212704805|ref|ZP_03312933.1| hypothetical protein DESPIG_02869 [Desulfovibrio piger ATCC 29098]
 gi|212671767|gb|EEB32250.1| hypothetical protein DESPIG_02869 [Desulfovibrio piger ATCC 29098]
          Length = 407

 Score = 85.9 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 43/283 (15%), Positives = 90/283 (31%), Gaps = 20/283 (7%)

Query: 70  TLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV---ES 125
           +L     + ++  A     A +    F  Y + I+   G     +I        +   + 
Sbjct: 109 SLDAFFEQEFKPVAQRSKKASSYEKEFSYYRNWIMPVLGKKSLIQIDMMDWEQILQPLDK 168

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI--RPWTKEDMQQFK 183
              T ++      ++  + K A  + +    P +  ++      G   R    E+ +  K
Sbjct: 169 ANLTIATKRYIYGTLCRILKCARDRGFAVTIPSM--KKLGLSNIGNNRRTRVIEECEMVK 226

Query: 184 SFWSEGSQPRLAFEFLLY---SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
              +   +   A+  +++   +G R S++       +  +    K  K   +  + + + 
Sbjct: 227 ILDNLKMRDINAYNIVVFGALTGCRFSEAAGLKWGDITESGIIFKKTKNNDLRIIPISNS 286

Query: 241 FMKLLAMT--PIGKETFFINNDKQKMNAT--QFSIWFKAKATKAGVNK----SAHGVRKF 292
               L         E  F+N   +        F    K  +     +K    S H +R  
Sbjct: 287 LKTFLESLNRKENHENVFLNTRGKIYKEAPHSFRQVVKELSLNENRDKLDRISYHSLRHT 346

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335
            AT+ +        LM   GWK V     Y  G +  ++   N
Sbjct: 347 VATMLSQE-LDIRSLMDLLGWKQVAMPARYMHGNEERKIAALN 388


>gi|116622416|ref|YP_824572.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116225578|gb|ABJ84287.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 332

 Score = 85.9 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 43/304 (14%), Positives = 94/304 (30%), Gaps = 37/304 (12%)

Query: 44  IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII 103
            PA ++AL  S      +   +  P T+      +R    +           +    +  
Sbjct: 3   DPANLAALLQSFFTTRLMAQRKVSPHTIASYRDTFRLLLQFA----------QKRLRKAP 52

Query: 104 RKSGDFDYRKITTKHIRSGVESRKH-TPSSAIQFLTSMRVLFKWAVRQ-----EYVAINP 157
            + G  D            +E+R+H    S    LT++R  F++A  +       +    
Sbjct: 53  SQLGLDDLDASLVGAFLEDLENRRHNGARSRNLRLTAIRSFFRYASLEAPAHSGIIQRVL 112

Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAG 213
            +  +R +R   G    T+ +++   +  +     G +        + +GLR S+     
Sbjct: 113 AIPNQRQRRALVGF--LTRPEIEALLAAPNRTQWLGRRDHAFLLTAVQTGLRLSEMTGLR 170

Query: 214 VQHLQNNIF-SIKTQKTG-----TIITVELPDGFMKLLAMTPIGKE-TFFINNDKQKMNA 266
            + +       ++ +  G     T +           +     G   T F +     ++A
Sbjct: 171 QEDVSLGAGAHVRCRGKGRKERCTPLAKPTAAVLKAWIREQGRGDSKTLFPSTRGGPLSA 230

Query: 267 TQFSIWFKAKATKAGVNK--------SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
                       +A  +         S H +R  +A      G     +    G ++V+ 
Sbjct: 231 DGVQHLLARHVAQARKHCASLRKKRVSPHVLRHAAAMELLQGGVDRAVIALWLGHESVET 290

Query: 319 AETY 322
            + Y
Sbjct: 291 TQIY 294


>gi|324008511|gb|EGB77730.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 57-2]
          Length = 416

 Score = 85.9 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 52/359 (14%), Positives = 122/359 (33%), Gaps = 39/359 (10%)

Query: 22  IYYFRKGHGRRIRLPYPHE----------STFIPAYMSALTGSTPKREYINSPRKKPT-- 69
            Y +R    R   +   +              I A      G +P     +  +K     
Sbjct: 38  RYDYRINGRRETLVIGQYGRDGISLAEAREELIAAKKLLKAGQSPAAAKRDGIKKIRGAE 97

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVES--R 126
           T       Y K      LA ++R   ++  D+ I+   G+    +ITT  +R   +    
Sbjct: 98  TFAVHTDSYMKHVI---LADSTRAMKQAVIDRDILPVLGNKMMAEITTSMVRDLCDRIVE 154

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE--RPKRKTEGIRPWTKEDMQQF-K 183
           +   ++A+Q    +  +++ A  + +   NP   ++           R  T E++  F +
Sbjct: 155 RGGRATAVQAREIISSVYRHANDRGHGLFNPAADIKPSSIAIFKPRERTLTPEEIGLFFR 214

Query: 184 SFWSEGSQ--PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIITVEL 237
           +  + G+    ++A + +L + +R  +   A    +    ++        K      + L
Sbjct: 215 TLDAIGAMGTMKMALKLVLITMVRKGEFTNATWDEIDFKKWTWTIPPDRMKGSRAHVIYL 274

Query: 238 PDGFMKLLAMTP--IGKETFFI---NNDKQKMNATQFSIWFKAKATKAGVNK------SA 286
           P     +L       G   + +    N ++ ++    +            +       + 
Sbjct: 275 PKQAQDILVGLQMCAGGSEYLVPGRYNFRKPLSNAALNSLIDRTVKIINEDGEHIQDFTV 334

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345
           H +R+ ++T+  +AG  +  +      +       Y K A+  R      ++ + ++DS
Sbjct: 335 HDMRRTASTLLHEAGYPSDWIEKALAHEQKGVRAVYNK-AEYARQRAYMLQQWADMIDS 392


>gi|322831291|ref|YP_004211318.1| integrase family protein [Rahnella sp. Y9602]
 gi|321166492|gb|ADW72191.1| integrase family protein [Rahnella sp. Y9602]
          Length = 332

 Score = 85.9 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 44/275 (16%), Positives = 87/275 (31%), Gaps = 22/275 (8%)

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRI------SFESYFDQIIRKSGDFDYRKITTKH 118
           ++   TL  LI  +  SAH  +L    R       ++E     + R+     + +   K 
Sbjct: 51  KEDNRTLLELIKAWY-SAHGITLKDGERRLDAMTHAYECMGQPLAREFDAQMFSRYREKR 109

Query: 119 IRSGVES----RKHTPSSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRP 173
           +          +K  P +    L   R +F    R   +   NP  +V   + +   +  
Sbjct: 110 LSGDYARSNRVKKVAPRTINLELAYFRAVFNELGRLGEWKGDNPIKNVRPFRTEESEMAF 169

Query: 174 WTKEDMQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
            TK+ + +     +      L    +  L +G R S++       +     +    K   
Sbjct: 170 LTKDQIGKLLEECAREKNNDLVSIVKLCLSTGARWSEAEELNKNQVTKYKITYTKTKGRK 229

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRK 291
             T+ + +   + L     G+        K+   A ++++        AG  +  H +R 
Sbjct: 230 NRTIPISEELYESLPEVKKGRL------FKKCYGAFRYALERTDIELPAG--QLTHVLRH 281

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
             A+     G     L    G   +     Y   A
Sbjct: 282 TFASHFMMNGGNILVLQRVLGHTDIKMTMRYAHFA 316


>gi|260559989|ref|ZP_05832167.1| phage integrase [Enterococcus faecium C68]
 gi|260073824|gb|EEW62148.1| phage integrase [Enterococcus faecium C68]
          Length = 249

 Score = 85.9 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 32/217 (14%), Positives = 70/217 (32%), Gaps = 36/217 (16%)

Query: 150 QEYVAINPCLSVERPKRK-----TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGL 204
              +  NP L V+ PK +      + ++  + ED         EG    +      Y+G+
Sbjct: 19  WGLIKQNPMLYVKIPKYEARPTTKKDLKIISLEDFDHMLEITPEGHPFYIPLNIGFYTGM 78

Query: 205 RCSDSCRAGVQHLQNNIFSIKTQK----------------TGTIITVELPDGFMKLLAMT 248
           R  + C      +  +  +I  +K                + +  T+ +    + +L   
Sbjct: 79  RVGEVCGLTWDDVDFSNGTITVEKQMVKNDGAWVYGTPKTSSSNRTIFIGQTLLAILKKH 138

Query: 249 P--------------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSA 294
                          I         D + +  +      +  +    ++ + H +R   A
Sbjct: 139 KKQQLENRMKYGKLYIDSNAVCTKEDGELVTPSVVKWNTRRISNALSLSFNFHSLRHTHA 198

Query: 295 TISADAGATAHELMATYGWKTVDQA-ETYTKGADRIR 330
           T+  + GA   E+    G   +    +TY+   D++R
Sbjct: 199 TLLLENGAKMKEISERLGHSRISITMDTYSHVTDKMR 235


>gi|256617053|ref|ZP_05473899.1| phage integrase [Enterococcus faecalis ATCC 4200]
 gi|256853752|ref|ZP_05559117.1| phage integrase [Enterococcus faecalis T8]
 gi|256596580|gb|EEU15756.1| phage integrase [Enterococcus faecalis ATCC 4200]
 gi|256710695|gb|EEU25738.1| phage integrase [Enterococcus faecalis T8]
          Length = 380

 Score = 85.9 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 44/309 (14%), Positives = 97/309 (31%), Gaps = 40/309 (12%)

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKH 118
           Y    +    T + L +E+       S+  ++      Y + Q++   G      I+  +
Sbjct: 58  YGVKKKAPDMTFEDLYNEWITHQR-TSVKASTIAISVRYANNQVLPAFGKLKLSNISVPY 116

Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS--VERPKRKTEGIRPWTK 176
            +  V+       S          + ++ V  +Y+  NP     + R K   +  + ++K
Sbjct: 117 CQKVVDEWHSKYESYDYMRKQTAQILRYGVAMQYIDNNPMEKTLLPRKKEYEKNRKFYSK 176

Query: 177 EDMQQFKSFWSE--GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--------------- 219
           E++      + +    +    F  L Y+G+R S+      + +                 
Sbjct: 177 EELNNLLDAFKDFGNMKQYAFFRLLAYTGMRKSEVLALQWKDIDTFNKELHVNKTLAVDE 236

Query: 220 -NIFSIKTQKTGTIITVELPD----------------GFMKLLAMTPIGKETFFINNDKQ 262
                I++ KT     V   D                 ++KL   T   ++  F      
Sbjct: 237 FGKVIIQSPKTRASRRVISLDTETLSILNNWKLQQKEEYLKLGYNTSSKEQHVFTTVKNT 296

Query: 263 KMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-E 320
                  + W +    K  + + + HG R   A++  +AG +   +    G +      +
Sbjct: 297 LYIPNTVNDWLRYILKKYNLPRITPHGFRHTHASLLLEAGESVKVVQQRLGHENSKVTLD 356

Query: 321 TYTKGADRI 329
            Y    +  
Sbjct: 357 IYAHITNNA 365


>gi|218547967|ref|YP_002381758.1| integrase; DLP12 prophage [Escherichia fergusonii ATCC 35469]
 gi|218355508|emb|CAQ88119.1| putative integrase; DLP12 prophage [Escherichia fergusonii ATCC
           35469]
          Length = 387

 Score = 85.9 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 38/216 (17%), Positives = 73/216 (33%), Gaps = 22/216 (10%)

Query: 129 TPSSAIQFLTSMRVLFKWA-VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           T ++  + L  M+ + + A    +++   P + +   + K        KE+ ++      
Sbjct: 142 TTATKAKHLALMKAILRAAERDWKWLEKAPVIKIPTVRNKRVRW--LEKEEAKRLIDECP 199

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGFMK 243
           E  +  + F     +GLR S+      Q +         + +  K+   I V L D   K
Sbjct: 200 EPLKSVVKFALA--TGLRRSNIINLEWQQIDMQRRVAWINPEDSKSNRAIGVALNDTACK 257

Query: 244 LLAMTPIGKETFFINNDKQKMNATQF------------SIWFKAKATKAGV-NKSAHGVR 290
           +L         F   + K                       +KA   +AG+ +   H +R
Sbjct: 258 VLRDQIGNHHKFVFVHTKPARRPDGSLTPAVRKMRVDDGRAWKAACRRAGIEDFRFHDLR 317

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
              A+    AG     L    GW++++    Y   A
Sbjct: 318 HTWASWLIQAGVPLSVLQEMGGWESIEMVRRYAHLA 353


>gi|254181639|ref|ZP_04888236.1| putative phage-related integrase [Burkholderia pseudomallei 1655]
 gi|184212177|gb|EDU09220.1| putative phage-related integrase [Burkholderia pseudomallei 1655]
          Length = 439

 Score = 85.9 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 53/293 (18%), Positives = 95/293 (32%), Gaps = 34/293 (11%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD 110
           L G  P+R     P+ KP  L  +I+ Y       ++A  +    E  + +      D D
Sbjct: 111 LAGPEPQRMESPKPKSKP--LSDVIALYLTEKKLDNVA-KTLDDKERTYAEFQGFFQDSD 167

Query: 111 YRKITTKHIRSGVESRKHTPSSAIQFL---TSMRVLFKWAVRQE-YVAINPCLSVE---- 162
                     +         +SA +     + +R LF +A+    Y A NP   V     
Sbjct: 168 INAFGADTAIAYKNRLLAANASASRINAKTSFLRDLFAYAIDNNLYFATNPFEKVRVSSK 227

Query: 163 -RPKRKTEGIRPWTKEDMQ------QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ 215
            + K++ E  R +T +D++       ++ +  +     L F   LY+G R  +     + 
Sbjct: 228 TKLKQRVEPYREFTDDDLKLIFDETSYRGYLRKPDYHWLPF-LSLYTGARVEELACLRLD 286

Query: 216 HLQNNI----FSIKTQKTGTIIT-VELPDG------FMKLLAMTPIGKETFFIN-NDKQK 263
            ++ +     F I+  K    I  V +            +  +        F +    + 
Sbjct: 287 QIKKDGGLHYFEIEKAKNRNSIRKVPMHREIEASGFLAYVEDLRAKNATMLFPHLKPGKN 346

Query: 264 MNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGW 313
             +   S  F        V    K  H +R    T   +       LMA  G 
Sbjct: 347 GYSKNMSRRFGDYLDVLKVPDKRKVFHSLRHTFITRLTEMNVHPVMLMALVGH 399


>gi|218531328|ref|YP_002422144.1| integrase family protein [Methylobacterium chloromethanicum CM4]
 gi|218523631|gb|ACK84216.1| integrase family protein [Methylobacterium chloromethanicum CM4]
          Length = 414

 Score = 85.9 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 55/347 (15%), Positives = 106/347 (30%), Gaps = 36/347 (10%)

Query: 9   PFVTKERTRHGKIIY--YFRKGHGRRIRLPYPHES-TFIPAYMSALTGSTPKREYINSPR 65
           P +       G   +   +R     R     P+       A  +A T      E  +   
Sbjct: 28  PGLYLVVQPAGGKSWAVRYRAAGKPRKLTLGPYPRLGLADAREAARTALHAVAEGRDPAG 87

Query: 66  KKPTT-----------LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR---KSGDFDY 111
           +K                 + ++Y +   +      S    ES+  + +    K  + D 
Sbjct: 88  EKQAARVEVAAVQTMRFGAVAADYIE--RYAKPRNRSWRETESFLTRTLDATDKWQEKDV 145

Query: 112 RKITTKHIRSGVESRKHTPSS--AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
           R I  K +R  +++     +S  A +   ++R  F W V +  +  +P   ++ P  +  
Sbjct: 146 RAIGRKDVRDALDAVVARGASIHANRLFAALRRFFAWTVERGILDASPMAGLKPPSPEIS 205

Query: 170 GIRPWTKEDMQQF-KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--- 225
             R  T  ++    K+    G       + L+ +G R S+   A  +    +  +     
Sbjct: 206 RDRVLTDAELVAVWKAAGEVGYPFGPVVQLLILTGQRRSEVVEAEWREFDLDGATWTIPR 265

Query: 226 -TQKTGTIITVELPDGFMKLLAMTP---IGKETFFINNDKQKMN----ATQFSIWFKAKA 277
              K      V L    +K+L   P         F    +   +    AT       AK 
Sbjct: 266 ERAKNDRAHVVPLAPQAVKILRCIPCVGTRSRLLFTTTGETAFSGVSKATDRLQGLSAKH 325

Query: 278 TKAGV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
              G+       H +R+  A+  A  G   H +       +   +  
Sbjct: 326 LPEGIEVEPWRLHDLRRTFASGCARLGVAVHVVEKALNHVSGTHSGI 372


>gi|86142418|ref|ZP_01060928.1| probable integrase [Leeuwenhoekiella blandensis MED217]
 gi|85831170|gb|EAQ49627.1| probable integrase [Leeuwenhoekiella blandensis MED217]
          Length = 195

 Score = 85.9 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 32/184 (17%), Positives = 61/184 (33%), Gaps = 21/184 (11%)

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220
           +ERPK   +     +  ++++      +  + RL    L   GLRC + C   ++ L  +
Sbjct: 5   IERPK---KLPVVLSFREVKRLLK-APKLLKHRLVLALLYGCGLRCFELCNLQLKDLDFD 60

Query: 221 I--FSIKTQKTGTIITVELP----DGFMKLLAMTPIGKETFFI----NNDKQ--KMNATQ 268
                I+  K      V L      G    L      + + +     N++ +   ++   
Sbjct: 61  RMMLHIRQGKGRKDRYVPLSKMQIRGLQTYLRA---EQPSIWCFTGNNSEGKAVPLSTQG 117

Query: 269 FSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
                      +G+ K  + H +R   AT   + G     +    G   +    TY   A
Sbjct: 118 VRWIVSEARKHSGIRKQVTTHSLRHSYATHLLEMGLDIMSVKDLLGHADIQTTLTYLHVA 177

Query: 327 DRIR 330
              R
Sbjct: 178 QLGR 181


>gi|163855610|ref|YP_001629908.1| integrase/recombinase [Bordetella petrii DSM 12804]
 gi|163855757|ref|YP_001630055.1| integrase/recombinase [Bordetella petrii DSM 12804]
 gi|163259338|emb|CAP41638.1| integrase/recombinase [Bordetella petrii]
 gi|163259485|emb|CAP41785.1| integrase/recombinase [Bordetella petrii]
          Length = 379

 Score = 85.9 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 52/318 (16%), Positives = 102/318 (32%), Gaps = 32/318 (10%)

Query: 39  HESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRK-------SAHWGSLAVNS 91
            +         A+   +  + Y    ++   TLK     YR+             +A  S
Sbjct: 48  DDPDASHNIHRAIHLLSDFQRYGTVFKQSHATLKGFTKSYRQVFEGFLQHLSAQGVAPGS 107

Query: 92  RISFESYF---DQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSSAIQFLTSMRVLFKWA 147
             ++ S     +  +   G  ++R I  +HI S +ES    + ++    L  ++ LF++A
Sbjct: 108 LRTWRSRLFRLEYFLLHHGIEEFRLIRIQHINSYIESLAGFSSNTVGSTLRILKQLFQYA 167

Query: 148 VRQEYV--AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLAFEFLLY 201
               +   + +  + + R +R+      ++  + ++  S        G +    F  L  
Sbjct: 168 CSNGFHVESFDNAIPIVRRQRRQRLPTVFSVGETEKILSAIDRSNALGKRNYAIFLLLAR 227

Query: 202 SGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLL------AMTPIGKE 253
            GLR SD       H     N+ SI  QKT   + + + D     +              
Sbjct: 228 MGLRISDVRGLMFHHFDWSRNVISIVQQKTKKPVDLPIMDEVGWAIIDYLRNGRPHSECP 287

Query: 254 TFFINNDKQKMNATQ-FSIWFKAKATKAGVN------KSAHGVRKFSATISADAGATAHE 306
             FI +       T            +A ++      +  H +R   AT           
Sbjct: 288 LVFIKHIAPFDGLTSALHQQMLQYLRRADIHVPANKPRGVHSLRHSLATTLLQKQVPIQT 347

Query: 307 LMATYGWKTVDQAETYTK 324
           +  T G   +     Y +
Sbjct: 348 ISHTLGHLDIGSTSGYVQ 365


>gi|82542847|ref|YP_406794.1| phage integrase [Shigella boydii Sb227]
 gi|81244258|gb|ABB64966.1| putative phage integrase [Shigella boydii Sb227]
          Length = 387

 Score = 85.9 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 44/215 (20%), Positives = 82/215 (38%), Gaps = 24/215 (11%)

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           ++    L+ ++ L + A  +E+  ++    ++ P+ K + IR     + Q+      E  
Sbjct: 144 ATKATHLSFIKALLR-AAEREWKMLDKAPIIKVPQPKNKRIRWLEPHEAQRLIDECPEPL 202

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGFMKLLA 246
           +     EF L +GLR S+      Q +         + +  K+   I V L D   ++L 
Sbjct: 203 KS--VVEFALATGLRRSNIINLEWQQIDMQRRVAWINPEESKSNRAIGVALNDTACRVLK 260

Query: 247 MTPIGKETFFINNDK--------------QKMNATQFSIWFKAKATKAGVNK-SAHGVRK 291
              IG    ++   K              +KM     + W KA   +AG++    H +R 
Sbjct: 261 KQ-IGNHHRWVFVYKESCTKPDGTKAPTVRKMRYDANTAW-KAALRRAGIDDFRFHDLRH 318

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
             A+    AG     L    GW++++    Y   A
Sbjct: 319 TWASWLVQAGVPLSVLQEMGGWESIEMVRRYAHLA 353


>gi|323175280|gb|EFZ60893.1| prophage lambda integrase [Escherichia coli LT-68]
          Length = 451

 Score = 85.9 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 60/364 (16%), Positives = 115/364 (31%), Gaps = 43/364 (11%)

Query: 9   PFVTKERTRH-GKIIYYFRKG-HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
             + ++  R  G++ Y ++    G+   L          A  +    +  + EY      
Sbjct: 92  AGLYEKFDRRTGRVYYQYKNPVTGKFHGLGTDKGKAEKIASTANQRIAAAEAEYFMRKID 151

Query: 67  KPTT--------LKWLISEYRKSAHWG----SLAVNSRISFESYFDQIIRKSGDFDYRKI 114
           +  +        LK  +  Y K          +A  +          ++ + G+   +++
Sbjct: 152 ESPSATKRRGIRLKAWVDRYLKIQDTRLKNGDIAATTHKEKTRMAAYLVSRLGNHPLKEL 211

Query: 115 TTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAI--NPCLSVERPKRKTEG 170
             +     ++    K   S+A         ++K A     V    NP  +  +P  K   
Sbjct: 212 EVRDFALILDEWLDKDMVSTARVNRGLWVDIYKEAQHAGEVPPGWNPPEATRKPIPKVTR 271

Query: 171 IRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
            R  T ED Q+  +   E    R A    + +G R  D C      + N    I   KTG
Sbjct: 272 AR-LTMEDWQKIYNATPEKHFIRNAMLLAIVTGQRRDDICHMRFSDVWNEHLHITQGKTG 330

Query: 231 TIITVELPDG-------FMKLLA-MTPIGKETFFINNDK----QKMNATQFSIWFKAKAT 278
             + + L            +++          + I++      + M+    S +F     
Sbjct: 331 MRLALPLTLRCDAIGITLKEVIDGCRDRILSPYLIHSRHQKQPKPMSKDNLSDYFAKARD 390

Query: 279 KAGV-------NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY--TKGADRI 329
            AG+         + H  R  S  +    G     L    G K     + Y  T+G + +
Sbjct: 391 LAGIIPPAGKTPPTFHEQRSLSERLYRAQGIDTKTL---LGHKVQATTDRYNDTRGQEWV 447

Query: 330 RLGI 333
           +L I
Sbjct: 448 KLVI 451


>gi|295402694|ref|ZP_06812637.1| integrase family protein [Geobacillus thermoglucosidasius C56-YS93]
 gi|294975266|gb|EFG50901.1| integrase family protein [Geobacillus thermoglucosidasius C56-YS93]
          Length = 284

 Score = 85.9 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 38/271 (14%), Positives = 105/271 (38%), Gaps = 22/271 (8%)

Query: 74  LISEYRKSAHWGSLAVNSRISFE---SYFDQIIRKSGDFDYRKITTKHIRSGVESRK--- 127
           ++ ++ +       + N+   +    + F +   +S D +++++  ++++  +   +   
Sbjct: 1   MLEQFERYLWEEGKSENTVKGYLQSVAGFLKWFNESKDVEFKQLHRENVQEYISFLRTVK 60

Query: 128 -HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE---RPKRKTEGIRPWTKEDMQQFK 183
              P +    L ++    ++ +  + V  +  L+ +   + +++   +     +D+++F+
Sbjct: 61  NAKPKTINTKLNALVKFNEFLIEMK-VQRDMVLTKKDYMKVQQQYASLAKVELKDVEKFR 119

Query: 184 SF--WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPD 239
                S   +       L Y+GLR S++    +      +    +++ K      V + D
Sbjct: 120 QLVLDSGNKRNYALVTLLAYAGLRISEALSLKMNDFNLVSREIIVRSGKGNKFRVVFMND 179

Query: 240 GFMKLLAM-------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKF 292
                L           I  E  F++N  ++++ T  +  FK  +   G   + H +R F
Sbjct: 180 KVKAALQSWLKERKEKGIESEYLFVSNRNKRLDRTTVNKLFKEYSEHIGKEITPHDLRHF 239

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYT 323
             + +   G + HE+    G   +     YT
Sbjct: 240 FCSHAISRGLSVHEVANQAGHSNIHTTLLYT 270


>gi|270293715|ref|ZP_06199917.1| tyrosine type site-specific recombinase [Bacteroides sp. D20]
 gi|270275182|gb|EFA21042.1| tyrosine type site-specific recombinase [Bacteroides sp. D20]
          Length = 345

 Score = 85.9 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 44/268 (16%), Positives = 91/268 (33%), Gaps = 31/268 (11%)

Query: 86  SLAVNSRISFESYFDQIIR------KSGDFDYRKITTKHIRS----GVESRKHTPSSAIQ 135
             A ++   +E  + Q+ +         D    ++    I +        RK  P +   
Sbjct: 67  DRAQSTYKQYEVLYKQLKQFLREEYHVEDIPLTELDLPFIEALNFFFRVKRKMKPRTVKA 126

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-WSEGSQ--P 192
            +  +  + + A+ +  +   P    E  K + +  +  T +++          G+Q   
Sbjct: 127 RIVLLNKVIRLALHRRIITRPPFDGFELEKTELK-NKSLTNDELDLLMKTPLKSGTQRFI 185

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHL---QNN--IFSIKTQKTGTIITVEL---PDGFMKL 244
           R  F F  ++GL  +D  +   + +    +     S   QK+ T   V+L   P   M+ 
Sbjct: 186 RDMFLFSTFTGLAYADVHKLSWKDIITEDDGSLWISANRQKSHTEFNVKLLNIPIRIMEY 245

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS-ADAG 301
                   + F        M+  Q ++  K  A   G+N+  S H  R   A+      G
Sbjct: 246 YKGLAPDGKVF------PHMSLGQVNVGLKRIARNCGINRKLSYHMARYTFASQICLSQG 299

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRI 329
                +    G K ++  + Y +  +  
Sbjct: 300 VPIESVSRMLGHKHIETTQRYARLNNEK 327


>gi|309702838|emb|CBJ02169.1| phage integrase [Escherichia coli ETEC H10407]
          Length = 390

 Score = 85.9 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 53/359 (14%), Positives = 122/359 (33%), Gaps = 39/359 (10%)

Query: 22  IYYFRKGHGRRIRLPYPHE----------STFIPAYMSALTGSTPKREYINSPRKKPT-- 69
            Y +R    R   +   +              I A      G +P     +  +K     
Sbjct: 10  RYDYRINGRRETLVIGQYGRDGISLAEAREELIAAKKLLKAGQSPAAAKRDGIKKIRGAE 69

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVES--R 126
           T       Y K      LA ++R   ++  D+ I+   G+    +ITT  +R   +    
Sbjct: 70  TFAVHTDSYMKHVI---LAESTRAMKQAVIDRDILPVLGNKMMAEITTSMVRDLCDRIVE 126

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE--RPKRKTEGIRPWTKEDMQQF-K 183
           +   ++A+Q    +  +++ A  + +   NP   ++           R  T E++  F +
Sbjct: 127 RGGRATAVQAREIISSVYRHANDRGHGLFNPAADIKPSSIAIFKPRERTLTPEEIGLFFR 186

Query: 184 SFWSEGSQ--PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIITVEL 237
           +  + G+    ++A + +L + +R  +   A    +    ++        K      + L
Sbjct: 187 TLDAIGAMGTMKMALKLVLITMVRKGEFTNATWDEIDFKKWTWTIPSDRMKGSRAHVIYL 246

Query: 238 PDGFMKLLAMTP--IGKETFFI---NNDKQKMNATQFSIWFKAKATKAGVNK------SA 286
           P     +L       G   + +    N ++ ++    +            +       + 
Sbjct: 247 PKQAQDILVGLQMCAGGSEYLVPGRYNFRKPLSNAALNSLIDRTVKIINEDGEHIQDFTV 306

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345
           H +R+ ++T+  +AG  +  +      +       Y K A+  R      ++ S ++DS
Sbjct: 307 HDMRRTASTLLHEAGYPSDWIEKALAHEQKGVRAVYNK-AEYARQRAYMLQQWSDMIDS 364


>gi|158313594|ref|YP_001506102.1| integrase family protein [Frankia sp. EAN1pec]
 gi|158108999|gb|ABW11196.1| integrase family protein [Frankia sp. EAN1pec]
          Length = 383

 Score = 85.9 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 49/293 (16%), Positives = 88/293 (30%), Gaps = 42/293 (14%)

Query: 73  WLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS-----------GDFDYRKITTKHIR 120
            +I  Y         LA NS +++     +                G+    +       
Sbjct: 24  QVIERYLDHVDGERGLARNSVLAYRRDLRRYREHLAAGGITSLAAVGEAQIAEFAAALRE 83

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                    P+S  + L ++R L ++A ++  V+ +    V  P       R  T + + 
Sbjct: 84  GDETHPPLAPASVARMLVAVRSLHRFAAQEGDVSEDVARPVRPPVPPRRLPRALTVDQVS 143

Query: 181 QFKSFWSEGSQPRLA------------------FEFLLYSGLRCSDSCRAGVQHLQNNIF 222
              +    G                         E L  +G R S++    +  L  +  
Sbjct: 144 AVIAAAVAGGPEYAEVSGGDPAELARRLRSAALLELLYGTGARISEAVGLDLDDLDLDRS 203

Query: 223 SIK-TQKTGTIITVELPDGFMKLLAM----------TPIGKETFFINNDKQKMNATQFSI 271
           +++   K G    V L    +  L            T       F++    +++      
Sbjct: 204 AVRLRGKGGRDRVVPLGRYAVTALERYLRRGRPHLVTECSGTAVFVSRRGNRLSRQSAWS 263

Query: 272 WFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
             +A A  AGV   S H +R   AT   D GA    +    G  +V   + YT
Sbjct: 264 ALRAAANAAGVPGASPHVLRHSFATHLLDGGADVRVVQELLGHASVSTTQIYT 316


>gi|11967381|gb|AAG42074.1|AF288684_1 integrase-like protein [Enterococcus faecium]
          Length = 278

 Score = 85.9 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 33/262 (12%), Positives = 75/262 (28%), Gaps = 19/262 (7%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
           I  + +S +    +  +   +     ++       +  K      R  +   +    +  
Sbjct: 9   IQAFEESLYLNEKSKATVSKYLRTVRKLAEYLQGKELTKPRLLEYREIL-QNQVKAQTVN 67

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI----RPWTKEDMQQFKSFWSEGS 190
             L+S+    ++     +        ++  K + +      R  ++ + +Q  +      
Sbjct: 68  GTLSSINAFLEFC---GWHD----CKIKLLKVQRKAFLDETRELSEAEYKQLLAAAQAKG 120

Query: 191 QPRLAFEFL--LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV--ELPDGFMKLLA 246
             RL    L    +G+R S+     V+  Q     I  +     + +  EL    +K   
Sbjct: 121 NERLYLVMLTICGTGIRVSELQHITVEAAQTGRAEICMKGKNRTVLLQKELRVRLLKYAK 180

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGAT 303
              I +   F     + ++ T      K     A V+      H +R   A         
Sbjct: 181 ELGIDEGHIFRTRSGKPLDRTNICHDMKKLCASAKVDPRKVFPHNLRHLFARSFYAIEKN 240

Query: 304 AHELMATYGWKTVDQAETYTKG 325
              L    G   ++    Y   
Sbjct: 241 LAHLADILGHSRIETTRIYVAA 262


>gi|307296564|ref|ZP_07576385.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX0411]
 gi|306495991|gb|EFM65578.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX0411]
 gi|315158701|gb|EFU02718.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX0312]
          Length = 387

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 47/313 (15%), Positives = 92/313 (29%), Gaps = 48/313 (15%)

Query: 57  KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKIT 115
           + E     +    T   L   +    H  ++   +    +++F +QI+   G      IT
Sbjct: 55  EIESTGISQHSIKTFSELYDLWMN-QHVKNIRNTTEQRIKNHFTNQILPSFGKMRLEVIT 113

Query: 116 TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE----GI 171
               +  +        S  +  +    +F + +    +  NP      PK          
Sbjct: 114 PAICQKILTEWSTKYQSYQKIKSYTSQVFNYGILIGVIKTNPMERTITPKSNHNFNEIEE 173

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLA--FEFLLYSGLRCSDSCRAGVQHLQ----------- 218
             +TKE+++QF     E    R    F    Y+G R  +      + +            
Sbjct: 174 EFYTKEELRQFFDCLQELKDDRALAFFRLAAYTGARKGEILGLTWKDIDFDKKTVQFNKT 233

Query: 219 -----NNIFSIKTQKT-GTIITVELPDGFMKLLAMTPI----------------GKETFF 256
                +    +   KT  +  T+ + DG + +L                           
Sbjct: 234 LVELSDGSLCVNPTKTESSKRTITIDDGTLTILKKWKRTVIKKNLSRGIRIDNMDDVPVI 293

Query: 257 IN---NDKQKMNATQFSIWFKAKATKAGVNKSA---HGVRKFSATISADAGATAHELMAT 310
                N K+      +     +K  +   +      HG RK  AT+  +AGA   ++   
Sbjct: 294 STIKANKKRDFLYKGYPNHVMSKIARKFPDMKIIKVHGFRKTHATLLFEAGAQVKDVQDR 353

Query: 311 YGWKTVDQA-ETY 322
            G  +     + Y
Sbjct: 354 LGHSSSKTTMDIY 366


>gi|296395312|ref|YP_003660196.1| integrase family protein [Segniliparus rotundus DSM 44985]
 gi|296182459|gb|ADG99365.1| integrase family protein [Segniliparus rotundus DSM 44985]
          Length = 422

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 52/355 (14%), Positives = 95/355 (26%), Gaps = 61/355 (17%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD 110
           L  +  K        K   T      ++        L   +   +        +  G   
Sbjct: 59  LADTQAKVAQGAYVHKNELTFDQACEDFLN--GLHGLKPTTLDGYRFDLAVPRQLLGRLS 116

Query: 111 YRKITTKHIRSGV--------------------ESRKHTPSSAIQFLTSMRVLFKWAVRQ 150
            +++  +H  + V                      +K    S    L + + + +  V Q
Sbjct: 117 VQQLAKQHFDNIVRQVQSGTLTRAHRNRNTREGNRKKWGARSVNGMLNTCQRVLEGLVEQ 176

Query: 151 EYVAINPCLSVERPKRKTEGI--RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD 208
             +A NP   V R   + +G   R  T E+M+   +   +G    +    L Y GLR  +
Sbjct: 177 GVLARNPAQLVGRVPNEAKGAAERAHTVEEMRAVLAAAKDGRDRHIWH--LAYHGLRRGE 234

Query: 209 SCRAGVQHLQ----------------NNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIG 251
                   +                   +    + K+  +  T++     M  L      
Sbjct: 235 ISGLTWGDVDFEAQEVAVRSSRVCVGGKVIEQDSLKSRSSKRTLKGTPVLMAELRAAKAR 294

Query: 252 KET--------------FFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSAT 295
           +                   +           +  F     +AG       H  R   AT
Sbjct: 295 QAAERLAHGEDYNDGGWVACDERGNPYRPDTLTRKFAKLQKRAGTKNVIRLHDARHTCAT 354

Query: 296 ISADAGATAHELMATYGWKTVDQA-ETYTK-GADRIRLGIKNSRRISSVVDSDDP 348
           I    G  A  + A  G          YT   A  I    ++  R+ +  D++ P
Sbjct: 355 IMHYQGVPAASVCAWLGHANPAITMRIYTHPSAGAIEQVAESYGRVVTFCDNEPP 409


>gi|291550344|emb|CBL26606.1| Site-specific recombinase XerD [Ruminococcus torques L2-14]
          Length = 397

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/285 (14%), Positives = 81/285 (28%), Gaps = 48/285 (16%)

Query: 85  GSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRSGVESRKHT---PSSAIQFLTSM 140
            ++   ++   +     +   K G      +     +      K       +      S+
Sbjct: 96  ANVRHGTKQGRKQLMRILQEDKLGACRIENVKLSDAKEWALRMKEKGYGFKTINNHKRSL 155

Query: 141 RVLFKWAVRQEYVAINPC--LSVERPKRKTEGIRPWTKEDMQQFKS---FWSEGSQPRLA 195
           +  F  A++ + +  NP         +  TE   P +      F S         +    
Sbjct: 156 KAAFYTAIQDDCIRKNPFDFQLNTVLEDDTEPKEPLSPTQEAAFLSFVQHDKVYQKYYDE 215

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT------------------QKTGTIITVEL 237
              LL +GLR S+ C      +  +   I                     K+G  + + +
Sbjct: 216 IIILLGTGLRISELCGLTEADIDLDKQLIHVDHQLLKIADVGYYVETPKTKSGNRV-IPM 274

Query: 238 PDGFMKLLAMTPIGKET------------FFINNDKQKMNATQFSIWFK------AKATK 279
            +  ++        ++              F+N +     A  +   F+       K  K
Sbjct: 275 SEKVLEAFQRVLNKRKYAQPVILEGYTKFLFLNRNGLPKVAVNYESMFRGLVRKYNKTQK 334

Query: 280 AGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
             + K  + H +R    T  A+AG     L    G   ++ A  Y
Sbjct: 335 VALPKVMTPHTLRHTFCTTLANAGMNPKALQYIMGHSNINMALNY 379


>gi|222151150|ref|YP_002560304.1| integrase [Macrococcus caseolyticus JCSC5402]
 gi|222120273|dbj|BAH17608.1| integrase [Macrococcus caseolyticus JCSC5402]
          Length = 374

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 55/352 (15%), Positives = 108/352 (30%), Gaps = 51/352 (14%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI--------SEYR 79
             G + R+   +++ F      + +G   K E     +     LK +I        +EY 
Sbjct: 6   KRGNKYRVRIFYKNEFGNKKSHSKSGFRSKSEAREYAKIAEANLKEIIKTDHNIILTEYV 65

Query: 80  KSA--HW--GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQ 135
           K     +   S + ++  S     D+I         + +T    +  +++    P S   
Sbjct: 66  KEYIEKFIIPSYSASTIDSNYYALDKIKDYFDTKLLKNVTFSDYQLFIDTLIKHPYSTST 125

Query: 136 FLTS---MRVLFKWAVRQEYVAINPCLSVERPKRK---TEGIRPWTKEDMQQFKSFWSEG 189
                  M      A R   +  N    VE   ++    +  +    ED++ F       
Sbjct: 126 IKKCHGLMSKAMITAYRDGLIKQNFTEYVEMKYKEVNMPKEKKYLPLEDIKSFLEHVRNR 185

Query: 190 SQ-PRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ-----------KTGTIITV 235
           S      F  ++ +GLR  ++C    + +   NN  ++              KTG    V
Sbjct: 186 STIQYYLFRLIIETGLRVGEACALTYEDIDTENNTLNVTKSYDQKRKVLGPTKTGNNRIV 245

Query: 236 ELPDGFMKLLAMTPIGKETF---------------FINNDKQKMNATQFSIWFKAKATK- 279
            +     K +      +  F               F++     +  +           + 
Sbjct: 246 HITQSLAKEINNLIQIQNAFKVVNEKVYNNKHNFIFVDELGNPIPRSTIHNTMVHITERM 305

Query: 280 --AGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET-YTKGADR 328
              G + S H +R   A++   A      + +  G K  +  E  YT   D+
Sbjct: 306 YGEGNHLSIHELRHTHASLLFQADVPLKAISSRLGHKDTNVTERVYTHLTDK 357


>gi|192361592|ref|YP_001983640.1| integrase [Cellvibrio japonicus Ueda107]
 gi|190687757|gb|ACE85435.1| integrase [Cellvibrio japonicus Ueda107]
          Length = 323

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 41/297 (13%), Positives = 89/297 (29%), Gaps = 65/297 (21%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK-----HTPSSAIQFLTS 139
              A  +  ++  +  + I          +  + + + ++          P+ A+  L +
Sbjct: 17  RRYAKRTIETYLHWIKRYIVFHNKQHPSLMGDREVEAYLDHLVLQHNVAGPTQAL-VLNA 75

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKT--EGIRPWTKEDMQQFKSFWSEGSQPRLAFE 197
           +  L+     +E +     L +   K +   +     T++++    +  S  S   L   
Sbjct: 76  LSFLY-----REILHKPLSLELRFVKSQKTRKLPVVLTRDEITALMANIS--SNHYLPAA 128

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKT--QKTGTIITVELPDGFMKLLAMT------- 248
            +  SGLR  ++ R   + +  +   ++    K G   TV L     K L +        
Sbjct: 129 LMYGSGLRLMEAVRLRTKDIDFDYCCVRVWNGKGGKHRTVTLAPELKKPLTVQIQRVEYL 188

Query: 249 -------PIGKETFFINN--------------------------------DKQKMNATQF 269
                  P     +  +                                  +  ++ +  
Sbjct: 189 LSKDLLNPTYDGVWLPHALRHKYVSANTSLGWQYLFPSDRLSIDPENQRVRRHHIDESGL 248

Query: 270 SIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
               +  + KA + K  SAH +R   AT    +GA    +    G   V   + YT 
Sbjct: 249 QKAIRNASQKANIRKHVSAHTLRHSFATHLLASGADIRTVQDQLGHTDVKTTQIYTH 305


>gi|269104474|ref|ZP_06157170.1| integrase/recombinase [Photobacterium damselae subsp. damselae CIP
           102761]
 gi|268161114|gb|EEZ39611.1| integrase/recombinase [Photobacterium damselae subsp. damselae CIP
           102761]
          Length = 468

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 36/265 (13%), Positives = 89/265 (33%), Gaps = 35/265 (13%)

Query: 91  SRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQ 150
            ++ +      ++++        ++ ++ R+ +++  ++P++A   L  +R +   A   
Sbjct: 201 YQVLYAPVLQNLMQQF-------LSERNDRNLIKTGSYSPATADNLLRMLRGVAHHAWLS 253

Query: 151 EYVAINPCLSVERPKRKTEGI----RPWTKEDMQQFKSFW------SEGSQPRLAFEFLL 200
           E + +     ++  K          R  +  ++ +  +         +G +    F  + 
Sbjct: 254 ESITVETLERIKAIKLPRGSRQSSGRYLSYSELDKISAICLNQTNKIKGIRDNAIFWLMY 313

Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---ITVELPDGFMKLLAMTP-------- 249
            SGLR ++     +  +  N  +I     G     +   L     + L+           
Sbjct: 314 ESGLRRAEVVNLSLDDIDINRGTIHVVGKGNKERYVPFSLESDLYRALSKWFDVRYKLQG 373

Query: 250 -IGKETFFINNDKQKMNATQFSIW----FKAKATKAGVNK--SAHGVRKFSATISADAGA 302
            I    F + N  Q++     +         +  + G  +  S H  R   AT    AG 
Sbjct: 374 NIFNSLFCVVNKHQQVVEKSLTTQSLNDLCKQIQRMGFERMVSPHDFRHSVATNLLRAGH 433

Query: 303 TAHELMATYGWKTVDQAETYTKGAD 327
               +    G  +V   + Y + +D
Sbjct: 434 DLLLVSKFMGHSSVTTTQRYDRRSD 458


>gi|227461189|gb|ACP39541.1| putative integron integrase [uncultured microorganism]
          Length = 316

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 44/304 (14%), Positives = 92/304 (30%), Gaps = 58/304 (19%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT---- 129
           L+   R+       ++ +  ++  +  + +  +G    R +    + + +          
Sbjct: 17  LLERVRECCRVRHYSLRTERAYVDWIRRFVMANGKRHPRDMGAAEVEAFLSRLATRDDVA 76

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            S+  Q L+++  L++  +    + +    SV R KR  +     ++ ++ +  +     
Sbjct: 77  ASTQNQALSALLFLYREVLG---IQLPWMESVVRAKRPQKIPAVLSRAEVTRLLALMD-- 131

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGT---------------- 231
            Q  L    L  +G+R  +  R  VQ +    N   ++  K G                 
Sbjct: 132 GQVALMASLLYGTGMRLMECVRLRVQDVGFDRNEICVRNGKGGKDRRVPLPRRVRERLLE 191

Query: 232 ---IITVELPDGFM----------KLLAMTPIGKETFF-------INNDKQKMNATQ--- 268
               + +                  L    P     F        +   K   +  +   
Sbjct: 192 QVERVRILHGQDLATGAGEVFLPHALARKYPGAGREFCWQYVFPSLRESKDPRSGKRRRH 251

Query: 269 ------FSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
                      K    KAG++K  S H +R   AT   ++G     +    G K V    
Sbjct: 252 HVDEGVLQRAVKIARDKAGIDKPASCHTLRHSFATHLLESGQDIRTVQELMGHKDVSTTM 311

Query: 321 TYTK 324
            YT 
Sbjct: 312 IYTH 315


>gi|188532702|ref|YP_001906499.1| Bacteriophage 186 integrase [Erwinia tasmaniensis Et1/99]
 gi|188027744|emb|CAO95599.1| Bacteriophage 186 integrase [Erwinia tasmaniensis Et1/99]
          Length = 342

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 49/280 (17%), Positives = 87/280 (31%), Gaps = 32/280 (11%)

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESY------FDQIIRKSGDFDYRKITTKH 118
           R+   TLK L+  +  SAH  +L    R     +       + + R      + +   + 
Sbjct: 52  REDRRTLKELVDAWY-SAHGITLKDGIRRQQAMHHAFGCMGEPLARDFDAQMFSRYRERR 110

Query: 119 IRSGVES----RKHTPSSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRP 173
           ++         ++ +P +    L   R +F    R   +   NP  ++ RP R  E    
Sbjct: 111 LKGEYARSNRVKEVSPRTLNLELAYFRAVFNELNRLGEWKGENPLKNM-RPFRTAEMEMA 169

Query: 174 W-TKEDMQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
           W T + +            P L       L +G R S++      HL     +    K  
Sbjct: 170 WLTHDQIALLLDECKRHDHPDLETVVRICLATGARWSEAESLKKSHLAKYKITYTNTKGR 229

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA---- 286
              TV +     + L             +DK+    +     F++   + G+   A    
Sbjct: 230 KNRTVPISKELYESLP------------DDKKGRLFSDCYGAFRSALERTGIELPAGQLT 277

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           H +R   A+     G     L    G   +     Y   A
Sbjct: 278 HVLRHTFASHFMMNGGNILVLQRVLGHTDIKMTMRYAHFA 317


>gi|49087894|gb|AAT51509.1| PA0728 [synthetic construct]
          Length = 328

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 43/314 (13%), Positives = 94/314 (29%), Gaps = 24/314 (7%)

Query: 22  IYYFR----KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISE 77
            ++      KG   R R     E+    A  +A         +   P+ +   L  L+  
Sbjct: 10  RWFVDVEPIKGKRFRKRFKTKMEAQQFEA--TARQKCAENPCWTLRPKDRRR-LSELVEL 66

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAI 134
           + +  H  +L+   R    +    + +  GD     +    +      +     +  +A 
Sbjct: 67  WYE-LHGQTLSNGHRCV--AILRLVAKDLGDPVAVSLEPAKVARLRSRQIANGMSGKTAN 123

Query: 135 QFLTSMRVLFKWAVRQEYVAI-NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS--- 190
             L  ++ ++    +   +   NP   +   K +   +   TK  + +  +     +   
Sbjct: 124 NRLGYLKSMYNELRQLGVIDHENPVGRMRPLKLQERPLSYLTKHQVSELLTALDARTTSP 183

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250
            P++     L +G R  ++     + L+ N       K+  + +V + +     L     
Sbjct: 184 HPKMVARICLATGARWGEAQALTPERLKGNTVIFANTKSKRVRSVPISEELGADLRR-HW 242

Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMAT 310
                F N           S   K    +A     +H +R   A+     G     L   
Sbjct: 243 QTHGPFTNCLG-VFRLVLLSTSIKLPKGQA-----SHVLRHTFASHFIMNGGHIVTLQHI 296

Query: 311 YGWKTVDQAETYTK 324
            G  ++     Y  
Sbjct: 297 LGHASLSMTMRYAH 310


>gi|148244009|ref|YP_001220247.1| phage integrase family protein [Acidiphilium cryptum JF-5]
 gi|146400572|gb|ABQ29105.1| phage integrase family protein [Acidiphilium cryptum JF-5]
          Length = 330

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 36/299 (12%), Positives = 86/299 (28%), Gaps = 48/299 (16%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE------------SRKHTPSSAIQ 135
           + N+   +   F  ++R +     +      I                 +R ++  S   
Sbjct: 25  SRNTVAGYRDTFRLLLRYASARHVKPPVKLTIEDIDADLIADFLVHTETARGNSARSRNT 84

Query: 136 FLTSMRVLFKWAVRQEYVAINPC--------LSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            L ++R  F++         +P         L++   +     +     +++    +   
Sbjct: 85  RLAAIRSFFRY-----VAMSDPTWLLQCQRILAMPNKRYVKRTVTFLDSDEIAALLAAPD 139

Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTG-TIITVELPDGF 241
                G +        + +GLR S+        +       I+    G       L    
Sbjct: 140 RTTWAGRRDHALLLLAVQTGLRASELVGLQCGDVVLESGAHIRCMGKGRKERATPLRRET 199

Query: 242 MKLLAMTPIGKE----TFFINNDKQKMNATQFSIWFKAKATKAGVNK--------SAHGV 289
           +KLLA      +      F +   ++++        +     A +          + H +
Sbjct: 200 VKLLAAWIGDDKNKSKPLFPSIRGERLSRDALEHLVRKHCLTASLTCPSIGSKRVTPHTL 259

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
           R  +A      G     +    G + V+  + Y     R++      + ++ V   D P
Sbjct: 260 RHSTAMDLLHHGVDPAVIALWLGHENVETTQIYIHADMRLK-----EKALARVAAPDTP 313


>gi|306823229|ref|ZP_07456605.1| conserved hypothetical protein [Bifidobacterium dentium ATCC 27679]
 gi|309801603|ref|ZP_07695724.1| site-specific recombinase, phage integrase family [Bifidobacterium
           dentium JCVIHMP022]
 gi|304553861|gb|EFM41772.1| conserved hypothetical protein [Bifidobacterium dentium ATCC 27679]
 gi|308221735|gb|EFO78026.1| site-specific recombinase, phage integrase family [Bifidobacterium
           dentium JCVIHMP022]
          Length = 413

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 60/373 (16%), Positives = 114/373 (30%), Gaps = 73/373 (19%)

Query: 19  GKIIYYFRK-------GHGRRIRLPYPHESTFIPAYMSALTGSTPKR---EYINSPRKKP 68
           GK ++ FRK          RR+                A  G   +        SP    
Sbjct: 17  GKGVWRFRKELGKDPATGKRRVIEAKGRTKAEARERFEAKVGELERTGLLPGGKSPYLVD 76

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128
              +WL ++YR       +   +  +            G    + IT +HIR  + +   
Sbjct: 77  YADRWL-ADYR-----TRVKPTTYRTRAGRIKACTDVIGHVRLKDITPEHIRHCMRTLGE 130

Query: 129 TPSSA--IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             +S+       S++++   A  +E + I+PC  V+ P+ +    R   +E   +  +  
Sbjct: 131 RLASSTLKDHYVSLKMVLDQAELEELIPIDPCRRVKPPRVERAVPRILDEEQPGRLIAAV 190

Query: 187 SEGSQPR--------------LAFEFLLYSGLRCSDSCRAGVQHLQN------------- 219
           ++    R              L FE    +G+R  +        L+              
Sbjct: 191 ADTKTARRGPADMDDMTEMWMLLFELAFAAGMREGERYALMPYELERRHGVPGIHVQQQI 250

Query: 220 ---------------------NIFSIKTQKTGTI-ITVELPDGF-----MKLLAMTPIGK 252
                                 I  + T KT      V + +        ++  +     
Sbjct: 251 QAYGLPDKAVIPNWLDASHLYGILWLTTPKTRAANRFVPIGESLWARLWARIHRLDIAPH 310

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATY 311
              F N     +  T  +  ++     AG+ +   H  R ++AT++A +G       A  
Sbjct: 311 GLVFTNQRGNPIRETTEAYHWRKALQAAGLPQVRIHSARHWTATMTAQSGMPDDARTAIM 370

Query: 312 GWKTVDQAETYTK 324
           G  ++D    YT 
Sbjct: 371 GHTSLDMTAHYTH 383


>gi|193215908|ref|YP_001997107.1| integrase family protein [Chloroherpeton thalassium ATCC 35110]
 gi|193089385|gb|ACF14660.1| integrase family protein [Chloroherpeton thalassium ATCC 35110]
          Length = 344

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/258 (13%), Positives = 89/258 (34%), Gaps = 32/258 (12%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH------TPSSAIQFLTSMR 141
              +  ++ +    + + S    +  I        +E  K       +P++A  + + ++
Sbjct: 86  KPKTEKAWRNTLKYLKQFSSQISFAGID----EEWLEKFKAFLLERVSPNTAHTYFSKIK 141

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201
              + AV++  ++++P   V   K+        +++++ + +    +    RLAF F  +
Sbjct: 142 AALRKAVKEGILSLDPAAHVPNIKKNQPERVFLSEDELARLQRTPCKNENVRLAFLFACF 201

Query: 202 SGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVELPDGFMKLL----------A 246
           +GL          ++++ +        +  +    I ++ +     ++L           
Sbjct: 202 TGLNLQSLETLTWKNIKKSSHDYCFIELGQKIPSGIDSLPVTLEAEQVLNQVSKANGIVE 261

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATA 304
                 E  F+       + T+      + A +A + K  S    R   A  S       
Sbjct: 262 ALSRSDEPIFLL-----PSRTEIQNCLNSWAKEASLEKRISFQVSRHTYAIRSLSNEMDL 316

Query: 305 HELMATYGWKTVDQAETY 322
           + L    G KT+   + Y
Sbjct: 317 YTLSKFLGHKTIGVTKIY 334


>gi|331083353|ref|ZP_08332466.1| hypothetical protein HMPREF0992_01390 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330404434|gb|EGG83979.1| hypothetical protein HMPREF0992_01390 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 411

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 51/346 (14%), Positives = 98/346 (28%), Gaps = 71/346 (20%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKIT----TKHIR 120
               ++      Y  S  + +L  +++ S+   +D  +    G      I      +   
Sbjct: 68  AGKASVNDTFDRYM-STKY-NLRESTKSSYLYTYDHYVRDTFGKKRIADIKYSDVLQFYY 125

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV----ERPKRKTEGI-RPWT 175
             +   K +  +       +   F+ AVR E +  NP   V     R   K  GI    T
Sbjct: 126 YLLNEVKISLGTLDTVHCLLHPTFQLAVRDEIIRNNPTDGVMKEISRESGKNRGIRHALT 185

Query: 176 KEDMQQFKSF---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN------------ 220
            E  + F  +             F  LL +G R  ++     Q L  +            
Sbjct: 186 VEQQRAFMEYIANHPIYYHWWPMFTVLLGTGCRIGEALGLRWQDLDYDKRTISINHSLSY 245

Query: 221 ---------IFSIKTQKTGTII-TVELPDGFMKLLAMT------------PIGKET--FF 256
                    +  I   KT   I T+ + D       M              I   +   F
Sbjct: 246 YQKPESNKSVLRISKPKTEAGIRTIPMLDIVKDAFEMLYEEQLENGFNESEIDGMSGFIF 305

Query: 257 INNDKQKMNATQFSIWFKAKA--------TKAGVNK---------SAHGVRKFSATISAD 299
            N      N    +   K  A         +A   +         S H +R    T   +
Sbjct: 306 CNRFGTVPNPQTVNHTIKRIANSYNADEVVRAKKERRDPIILPNFSCHHLRHTFCTRLCE 365

Query: 300 AGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVVD 344
                  + +  G + ++   + Y +  +  +   ++   +++ +D
Sbjct: 366 NETNLKVIQSIMGHRNIETTMDIYAEATEEKK--QESFENLAAKLD 409


>gi|294339749|emb|CAZ88111.1| putative phage integrase, Bbp50 [Thiomonas sp. 3As]
          Length = 350

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 45/287 (15%), Positives = 88/287 (30%), Gaps = 24/287 (8%)

Query: 83  HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSSAIQFLTSMR 141
               +  ++   ++S         G    R +    +++ +  R   +  +   +++ +R
Sbjct: 59  EAQRVEHSTLAGYKSAAAFWEAAVGSKALRGLVKSDVQTALAKRPDLSGKTINNYMSVLR 118

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF--KSFWSEGSQPRLAFEFL 199
                AV    +  NP   + R K + E   P++ ++      +   S   Q     EF 
Sbjct: 119 QALDLAVADNLIQENPAGDIPRAKHQKEPPDPFSADEGAAIIGRLRQSHPGQVANMVEFW 178

Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIKTQ------------KTGTIITVELPDGFMKLLAM 247
           +++GLR S+      +++     ++               KT    TV L       L  
Sbjct: 179 MWTGLRTSEIFALKWKNVDLRSGTVLVSEAVVRGEHKDSTKTNVARTVLLNSMAKAALQR 238

Query: 248 T-----PIGKETFFINNDKQKM---NATQFSIWFKAKATKAGVNKSAHGVRKFSATISAD 299
                   G E F             A + S W           +  + +R   +T    
Sbjct: 239 QRAFTQAAGAEVFQDPRYGTPWIDERAFRRSYWTPTLKLLGVRYRRPYNMRHTYSTAMLM 298

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346
           AG T        G        TY+K  D  R       R+ +++   
Sbjct: 299 AGMTPAFCARQLGHSVEMFLRTYSKWIDGQR-DDSEMARLEALIAPP 344


>gi|289164001|ref|YP_003454139.1| phage-related integrase [Legionella longbeachae NSW150]
 gi|288857174|emb|CBJ10990.1| putative phage-related integrase [Legionella longbeachae NSW150]
          Length = 410

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 57/293 (19%), Positives = 119/293 (40%), Gaps = 30/293 (10%)

Query: 56  PKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT 115
           PK +     +K+ +T+K LI  +  +      A   +I      D II   G+     + 
Sbjct: 84  PKEQIAEQKQKEQSTVKNLILHWYTNYIEKHRAQPLQIWQHIKVD-IIPLLGNKKLEHLK 142

Query: 116 TKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL--------SVERPK 165
           T+ I   ++    + +P  A + L++++  F +AV +  + +NP +         +E+P+
Sbjct: 143 TREITQALDKIVGRGSPVHANKVLSTLKQAFNYAVSRGEMLLNPAMTIRARDIGGIEKPR 202

Query: 166 RKTEGIRPWTKEDMQ---QFKSFWSEGS--QPRLAFEFLLYSGLRCSDSCRAGVQ--HLQ 218
                 R  T ++++   QF      G+  Q R A + +L +G+R  +   A       +
Sbjct: 203 E-----RYLTLDEVKILWQFLDSEEHGTSFQIRAALKIILLTGVRTGEIRVAKWSEFDFE 257

Query: 219 NNIFSIKTQ--KTGTIITVELPDGFMKLLAMTPI--GKETFFINNDKQKMNATQF--SIW 272
           N++++I  +  KT  ++ + L +   K+L         E      D Q + + +      
Sbjct: 258 NSLWTIPAENTKTNIVMRIHLTELTKKVLRELKAHSDSEYVITGADDQSILSDRAMPRAV 317

Query: 273 FKAKATKAGVNKSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTK 324
            + ++     + +AH +R+  AT   ++       +    G K      TY K
Sbjct: 318 IRIQSRVGIPHWTAHDLRRTFATQLGESLHVDPVVIEKCLGHKMPKIMATYNK 370


>gi|29830724|ref|NP_825358.1| integrase/recombinase [Streptomyces avermitilis MA-4680]
 gi|29607837|dbj|BAC71893.1| putative tyrosine-family recombinase/integrase [Streptomyces
           avermitilis MA-4680]
          Length = 307

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 47/289 (16%), Positives = 86/289 (29%), Gaps = 56/289 (19%)

Query: 97  SYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYV 153
           +    +I   G     K+  ++I +             +  Q   + R     AVR+ ++
Sbjct: 7   AVRKHLIPALGAHRLDKLKPEYIEAFYGRMVADGRKAGTIHQIHRTFRTALNEAVRRGHL 66

Query: 154 AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG 213
           A NP    + P+   E I P+T E++Q+     ++  +    +   L  GLR  ++    
Sbjct: 67  ARNPVQLAKSPRVSEEEIEPYTVEEVQRLL-RAADYRRNSARWAVALALGLRQGEALGLK 125

Query: 214 VQHLQNNIFSIKT------------------QKTG-------------------TIITVE 236
              +  +   +                    +K G                       V 
Sbjct: 126 WADVDLDRGVLMVRRSRRRPRYAHGCGDTCGRKAGYCSQRQRTNPETADTKSRAGRRAVG 185

Query: 237 LPDGFMKLLAMTPIGKET--------------FFINNDKQKMNATQFSIWFKAKATKAGV 282
           LP   + LL      ++                F     +  +       +K     A V
Sbjct: 186 LPSQLVDLLRTHQAKQQAERAAAGADWTDEGWLFATPTGRGTSPRTDYDDWKELLDDAKV 245

Query: 283 -NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
            +   H  R  +AT+    G +   +M   GW T   A  Y    D +R
Sbjct: 246 RDGRLHDARHTAATVLLILGVSERAVMGLMGWSTTAMAARYQHMVDSVR 294


>gi|302876394|ref|YP_003845027.1| integrase family protein [Clostridium cellulovorans 743B]
 gi|302579251|gb|ADL53263.1| integrase family protein [Clostridium cellulovorans 743B]
          Length = 361

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 64/347 (18%), Positives = 109/347 (31%), Gaps = 40/347 (11%)

Query: 10  FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
           F+   +   GK  +  R   G               AY+  L     ++  +N    +  
Sbjct: 17  FIVSYKDETGK--WKQRAKQGFEN---ESKAEKAAKAYIFDLKEELEEKAKLNKD-YENI 70

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--- 126
           T +     Y K      +  ++   F+    +            I  + I++ V+     
Sbjct: 71  TFEEFSKMYLKHKKNH-VEPHTLTRFKLAISKFSD-LDSMRMTDIKVRDIQNIVDKMVKS 128

Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
                SS + +  ++  +F+ A++Q E +  NPC +V  PK      R  TK ++    S
Sbjct: 129 DTLKASSILAYKNTVSTMFESAIKQFEVIISNPCTNVIAPKAAKPNKRALTKIEVDDLLS 188

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ----KTGT------- 231
                +   L      Y GLR  +      Q +   N++  I  Q    K G        
Sbjct: 189 KIENKTH-YLISLIAAYCGLRAGEILGLTWQDIDEENDLIKITKQWKKLKNGEYGMGPLK 247

Query: 232 ------IITVELP--DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
                  +T+ L       K      IG E             +     +K     AG +
Sbjct: 248 SSNSYREVTLPLKVKLELKKYKIEYSIGDEQRLFKYKDSSCIVSTLRYDYKK----AGYD 303

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRI 329
            S H +R   A++    G T  E     G    +   TY+   AD  
Sbjct: 304 VSIHELRHSYASLLISKGLTHDEAAEVLGHTVEENIRTYSHLTADNK 350


>gi|212696176|ref|ZP_03304304.1| hypothetical protein ANHYDRO_00712 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676805|gb|EEB36412.1| hypothetical protein ANHYDRO_00712 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 330

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 46/305 (15%), Positives = 96/305 (31%), Gaps = 65/305 (21%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQII-----------------RKSGDFDY-------- 111
            Y KS    +L+  +   +       I                 +   D +         
Sbjct: 14  SYLKSIR--ALSEKTISEYRYDLINFIYYQILRKVYYNDKQNLNKDIEDENININKIFNK 71

Query: 112 ---RKITTKHIRSGV----ESRKHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVER 163
                I  + + S +           S+  + ++++R  +K+  ++ E +  N    +  
Sbjct: 72  SFISDINIQDMYSYISYLDNELNDNASTRSRKISALRSFYKYLHQEIEMIDNNITEKLRN 131

Query: 164 PKRKTEGIRPWTK-----------EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRA 212
           PK +       T            E+  +F        +        L +G+R S+    
Sbjct: 132 PKIQKRQPVYLTLSETELLLETINEEKNEFLRN-----RDMAIVFTFLTTGMRLSELVSV 186

Query: 213 GVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA---------MTPIGKETFFINNDKQK 263
            +  ++++ F+I   K     T+ L    + L+          +  I     FI+  K++
Sbjct: 187 DLNDIKDDHFTII-GKGNKERTIYLTKNCIDLIDNYIMIRKNYLKDIKINALFISTRKKR 245

Query: 264 MNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQA 319
           ++             KAG +    S H +R  +AT+    G      L    G ++V   
Sbjct: 246 ISNRAVQSTVDKYLKKAGFDTRVYSTHKLRHTAATLMYKYGNVDIRALKDVLGHESVSTT 305

Query: 320 ETYTK 324
           + YT 
Sbjct: 306 QIYTH 310


>gi|94499639|ref|ZP_01306176.1| Integrase [Oceanobacter sp. RED65]
 gi|94428393|gb|EAT13366.1| Integrase [Oceanobacter sp. RED65]
          Length = 331

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 50/331 (15%), Positives = 101/331 (30%), Gaps = 39/331 (11%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
           ++T+ G     F+   G R    +P        +  A T +   +      +   T +  
Sbjct: 4   KKTKQGNYRAQFQ-ADGTRYDKTFPTAKE--AKHWEAETKAAANKGLNEIFKNAKTPMVE 60

Query: 74  LISEYRKSAHWGSLAVNSRIS---FESYFDQIIRKSGDFDYRKITTK---HIRSGVESRK 127
           ++        W  L  N+        +   ++    G+    K   +   + R    S  
Sbjct: 61  MVH------KWYDLHGNTLRDGLHQRNALVKMCEAMGNPQAGKFKPETFLNYRRERLSAG 114

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            + +     LT ++ +F W  R  E+   NP   V++  +    +R    ++++   +  
Sbjct: 115 ISENMVNHELTYLKSMFNWLTRFFEWNQENPLKHVKKVTQYDVELRYLEHDEIKTLIAAL 174

Query: 187 SEG--SQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFM 242
             G  S P L     L +G+R +++ +   ++L    N   +   K     T+ +    M
Sbjct: 175 ESGRSSNPSLITRLCLSTGMRWNEANQLRRENLIPSQNKIRLNITKNSKARTLLITPQLM 234

Query: 243 KLLAMTPIGKETFFINNDKQKMNA---TQFSIWFKAKATKAGVNK----SAHGVRKFSAT 295
             +                +             FK    K  +        H +R   A+
Sbjct: 235 NEIV------------EQGEPFGRLFPQDHYNAFKLALDKTEIKLPKGQRTHVLRHTFAS 282

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGA 326
                G     L    G  T+     Y   A
Sbjct: 283 WYMINGGRLEVLQKILGHGTILMTMKYAHLA 313


>gi|330997656|ref|ZP_08321501.1| site-specific recombinase, phage integrase family [Paraprevotella
           xylaniphila YIT 11841]
 gi|329570184|gb|EGG51924.1| site-specific recombinase, phage integrase family [Paraprevotella
           xylaniphila YIT 11841]
          Length = 409

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 45/317 (14%), Positives = 99/317 (31%), Gaps = 31/317 (9%)

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKSAHWG---SLAVNSRISFESYFDQIIR------ 104
           +T  +E     ++   TL  L   +           ++  +  ++     ++        
Sbjct: 93  ATAVKEAFQGSKETRMTLLKLFDRHIGEVRARVGIDVSHRTLPNYLYTRSRLADFVSSRF 152

Query: 105 KSGDFDYRKITTKHIRSGVE----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
           K  D  + ++  + IR   E     +     +   +L  ++ + + A ++ +        
Sbjct: 153 KVSDLAFCQLNEQFIREFQEYVVIEKGLGVQTVRHYLAILKKICRIAFKEGHSDKFYFEH 212

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP-----RLAFEFLLYSGLRCSDSCRAGVQ 215
            + PK+K    R  +KED ++ +     G +P     R  F F  Y+G    D       
Sbjct: 213 YKLPKQKETAPRALSKEDFEKIRDIELTGCRPEHSIVRDMFLFACYAGTSYVDVVAITPD 272

Query: 216 HLQNN-----IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS 270
           +L  +         +  K G +  V+L    + L+                  +      
Sbjct: 273 NLSRDDSGALWLKYRRGKNGQLSRVKLLPEAIDLIDKYRDDTRATLF----PVIPYQALK 328

Query: 271 IWFKAKATKAGVNK--SAHGVRKFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGAD 327
               +   K G+    S H  R   +T+   + G     +    G   +   + Y +   
Sbjct: 329 WCLTSIKMKVGIKGRLSYHMGRHSFSTLMTLENGVPIETVSRMLGHADIRTTQVYAR-VT 387

Query: 328 RIRLGIKNSRRISSVVD 344
             +L     + I +  D
Sbjct: 388 PKKLFEDMDKYIEATKD 404


>gi|307720947|ref|YP_003892087.1| hypothetical protein Saut_1026 [Sulfurimonas autotrophica DSM
           16294]
 gi|306979040|gb|ADN09075.1| hypothetical protein Saut_1026 [Sulfurimonas autotrophica DSM
           16294]
          Length = 377

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 54/311 (17%), Positives = 110/311 (35%), Gaps = 51/311 (16%)

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK 113
           S  +R++     K   TL  ++  Y         A ++   +++Y ++I    G     K
Sbjct: 73  SAEERDFTRQSIKNKLTLDQIVEWYFG----QRKAKDNIKDYQAYKNRIAPILGSKIATK 128

Query: 114 ITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQE-YVAINP----CLSVERPKR 166
           +TT  I+   +   +K+ P +  + + S+R L+  A++++  V  NP       +++ ++
Sbjct: 129 VTTDDIQKLQDKLIKKYAPKTTNETINSLRALYNKAIKKKRLVGSNPVVISSDDIQKIEQ 188

Query: 167 KTEGIRPWTKEDMQQFKSFWSEGS-----QPRLAFEF----LLYSGLRCSDSCRAGVQH- 216
            TE  +  T E+++   + +  G      QPR         L ++G R S      V+H 
Sbjct: 189 NTEPGKVLTNEELELMFNTFKNGDYDLEIQPRPTLYLFSKILYFTGARPSGVIDIQVKHC 248

Query: 217 -LQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK------------ETFFINNDKQ- 262
               N  +IK  K G     ++    M+L+                   +TF      + 
Sbjct: 249 NFDENKITIKAMKKGKSYQAQVRLELMELIKEWISEHSLGFNDYIFYPQQTFIRTGKGKD 308

Query: 263 ------KMNATQFSIWFKAKATKAGVN-------KSAHGVRKFSATISADAGATAHELMA 309
                         ++ K      G+         S + +R+ + T    A       M 
Sbjct: 309 KATAYSGYRKQGQQVFNKIFNV--GIPNTELMHRVSFYSLRRTAGTKVYKA-KGIMHAML 365

Query: 310 TYGWKTVDQAE 320
                +V   +
Sbjct: 366 FLNHTSVKTTQ 376


>gi|307323013|ref|ZP_07602264.1| integrase family protein [Sinorhizobium meliloti AK83]
 gi|306891340|gb|EFN22275.1| integrase family protein [Sinorhizobium meliloti AK83]
          Length = 328

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 37/252 (14%), Positives = 74/252 (29%), Gaps = 23/252 (9%)

Query: 96  ESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI 155
                +    + D D   I    +    E+R +   S    L +++  F++   +    +
Sbjct: 43  RRLSKRPCLLNEDIDVPMILA-FLEHIEETRGNKARSRNARLAAVKSFFRYLEHRVPAVL 101

Query: 156 NPCLSV---ERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSD 208
           +  L V      K     +   ++ ++Q   +        G + R         GLR S+
Sbjct: 102 DQALRVHAMPMKKIDEALVASLSRTEVQALLNAPDRRSLSGIRDRAMLHLAFAGGLRVSE 161

Query: 209 SCRAGVQHLQNNI---FSIKTQKTGTIITVELPDGFMKLLA----MTPIGKETFFINNDK 261
                +            I  +     +     +    + A        G    F+NN  
Sbjct: 162 LVGLTLDQFDGRSPASIHIIGKGRRERVLPLWQETAAAIRAWIAVRPKNGDTALFLNNAG 221

Query: 262 QKMNATQFSIWFKAKATKA--------GVNKSAHGVRKFSATISADAGATAHELMATYGW 313
           + M  + F    +  A  A          + S H +R   A     A     ++    G 
Sbjct: 222 RMMTRSGFEYILEKHAAAAVSVAPTLTTKSISPHVLRHSCAMHMLQATRDIRKVALWLGH 281

Query: 314 KTVDQAETYTKG 325
            ++  AE Y + 
Sbjct: 282 ASLQSAEIYLRA 293


>gi|225027746|ref|ZP_03716938.1| hypothetical protein EUBHAL_02005 [Eubacterium hallii DSM 3353]
 gi|224954950|gb|EEG36159.1| hypothetical protein EUBHAL_02005 [Eubacterium hallii DSM 3353]
          Length = 415

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 65/409 (15%), Positives = 120/409 (29%), Gaps = 76/409 (18%)

Query: 12  TKERTRHGKII-YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP---RKK 67
              R R GK   YYF+       R           A   A TG+    EY ++    +  
Sbjct: 7   VSTRKR-GKTWQYYFQLASVNGTRKWKTGSGYRTKAEAQA-TGTKALAEYNSTGIAFKVS 64

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR 126
             ++      + +      LA  +  +++      I    G +  + +  + +R+ +   
Sbjct: 65  EQSVADYFDYWMEHYVEQELAETTVNTYKKRIRLYIKPYIGSYKLKNVQGETLRNFLAEL 124

Query: 127 KHTPSSAIQ---FLTSMRVLFKWA-VRQEYVAINPCLSVERPKRKT-------EGIRPWT 175
             T  S          +   F +A V+ ++++++P   +  P ++        +    + 
Sbjct: 125 HRTGMSRNTLTCIKGMLTSAFGYATVQAKFISVDPSYKLTLPNKRKDSEVGTRKENHIFV 184

Query: 176 KEDM-QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK------ 228
           +EDM       + EG    LA     Y GLR  +        +     +I   K      
Sbjct: 185 EEDMWNAIIERFPEGHPSHLALMLGYYCGLRLGEVYGLTWDCVDFENKTITINKQMQEPS 244

Query: 229 --TGTIITVE-------------LPDGFMKLLAMTPIGKET------------------- 254
                ++ V              +     + L      KET                   
Sbjct: 245 GCGKWLLYVPKYDSSRTVTVGNNVLALLKRTLEFQLTDKETCGEYYQENYMNYDEETHSL 304

Query: 255 ----------FFINNDK------QKMNATQFSIWFKAK-ATKAGVNKSAHGVRKFSATIS 297
                     F            + M  T  SI  KAK  T        H +R   ATI 
Sbjct: 305 LSLNDLRPVHFVNAKQGGLLAHPRNMQHTSRSIHGKAKNCTLISEEWDFHSLRHTHATIL 364

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346
            +AG     +    G   +   + YT    +  L + +       +D++
Sbjct: 365 YEAGVPMPLIQKRLGHINIQTTKRYTDHVTKKMLSMLDEVINGDNIDNN 413


>gi|254384553|ref|ZP_04999893.1| integrase [Streptomyces sp. Mg1]
 gi|194343438|gb|EDX24404.1| integrase [Streptomyces sp. Mg1]
          Length = 384

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 59/363 (16%), Positives = 107/363 (29%), Gaps = 39/363 (10%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEY 78
           G+    +    G R   P    +         LT +  +R +   P            EY
Sbjct: 22  GRWQARYWAPDGSRRTAPETFATKTDAQDWLTLTKADIQRNHWTDPDVGKVNF----EEY 77

Query: 79  -RKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAI 134
             K      LA  +   +       ++   GD D  +IT + +R+    R      ++  
Sbjct: 78  ALKWVDERGLAATTDELYRRLLRLHVLPAFGDLDLDEITPQAVRTWRAERLTATGATTVA 137

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
           +    ++ + + A   E +  NPC        + +     T   +       + G + RL
Sbjct: 138 KCYRLLKAIMETATDDELIRRNPCRIRGAGSEQAKERPTATVAQVDALAE--AMGPRWRL 195

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ------KTGTII-----------TVEL 237
              F  Y  +R  +        +  +  +++         TG  +           T+ L
Sbjct: 196 MVYFCAYGPMRPEEQAALRRTSVTLDPLAVRITEAAPELNTGRRVEGDTKSAAGVRTIHL 255

Query: 238 PDGFMKLLA------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGV 289
           P      +                F+         T F   +     K G+ K    + +
Sbjct: 256 PAFLYMEVKRHLDWFAEKEPDGLLFVGEKGAPFRRTSFGRKWAKARAKVGLPKDFRFYDL 315

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL----GIKNSRRISSVVDS 345
           R    T+S  +GAT  + M   G  +   A  Y    D  +     GI    R +    S
Sbjct: 316 RHTGHTLSTQSGATLKDTMVRAGQSSEKAAMIYQHSDDERQQEVAGGIDARVRAARQKAS 375

Query: 346 DDP 348
             P
Sbjct: 376 PKP 378


>gi|146293992|ref|YP_001184416.1| phage integrase family protein [Shewanella putrefaciens CN-32]
 gi|145565682|gb|ABP76617.1| phage integrase family protein [Shewanella putrefaciens CN-32]
          Length = 432

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 55/339 (16%), Positives = 102/339 (30%), Gaps = 47/339 (13%)

Query: 50  ALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRIS---FESYFDQIIRKS 106
           A  G  P  E          T+  L  ++     +   A   +        Y   I    
Sbjct: 85  AKQGIDPLAERERQQEITIKTVNDLFDDW-----YQCTAPRLKHPEIPMRMYTKDIKPAI 139

Query: 107 GDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS---V 161
           G      +  + IR+ +    + + P+ A + L   + LF  A + +  + NP  +    
Sbjct: 140 GQLKVTDVNARDIRAILHKVVKSNRPTVANKTLLFCKQLFNHACKLDVASGNPAAAFNTA 199

Query: 162 ERPKRKTEGIRPWTKEDMQQ----FKSFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQH 216
           +    +    R  +  ++       ++     S    LA   LL  G+R  +   A    
Sbjct: 200 DAGGLEKNRTRVLSLNEIAAAFPVLRNSRPIFSHENYLAVALLLCLGVRKGELIAAKWSE 259

Query: 217 LQNNIFSIK----TQKTGTIITVELPDGFMKLL---------------AMTPIGKETFFI 257
              +    +      KTG  IT+ L +  ++ L               A     +  +  
Sbjct: 260 FDFDQQVWRMPKERSKTGVGITIPLSEFVIEWLKELKIIACGSEYVFPARKASKRREYIA 319

Query: 258 NNDKQKMNATQFSIW-------FKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMA 309
           N+      A  F          F+    KAGV   + H +R+   T+ A      H    
Sbjct: 320 NDTLNHALAKLFGQKHDSNKQPFENLLGKAGVEHFTVHDLRRTCRTLLASLKVPPHIAER 379

Query: 310 TYGWKTVDQAETYTK--GADRIRLGIKNSRRISSVVDSD 346
               K      TY      +  R  +     + S + ++
Sbjct: 380 CLNHKLKGIEGTYNHHDYLEERREALDKLAALISPIINN 418


>gi|293380464|ref|ZP_06626531.1| site-specific recombinase, phage integrase family [Lactobacillus
           crispatus 214-1]
 gi|290922971|gb|EFD99906.1| site-specific recombinase, phage integrase family [Lactobacillus
           crispatus 214-1]
          Length = 370

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 37/296 (12%), Positives = 92/296 (31%), Gaps = 36/296 (12%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKH 128
                  + ++         ++  ++  +  +    G     K+T    +  +    + H
Sbjct: 61  FAEYFKNWYETYKTPGTTNGTKKRYKRIYKLLTEYFGKTKLSKVTRYRYQEFMNQYGKSH 120

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV--ERPKRKTEGIRPWTKEDMQQFKSFW 186
              +  +   S+    + A+ +  +  N    +       +T  I       +QQ K   
Sbjct: 121 VKGTVYKTNGSINSSIRDALAEGLIRTNFAERINLTWNDERTRKIDYLNFNQVQQLKKSL 180

Query: 187 SEGSQP----RLAFEFLLYSGLRCSDSCRAGVQHL-----------------------QN 219
             G +P    R     ++Y+G+R  +        L                        +
Sbjct: 181 LGGIKPSYISRYMLLTIIYTGMRPGEIRVLTWHDLNFEDHTIHISKSWDYDNNKIFDYDS 240

Query: 220 NIFSIKTQKTGTIITVELPDGFMKLLAMT-PIGKETFFINNDKQKMNATQFSIWFKAKAT 278
           +  + +T+   +   +++    + +L    P   E  FI+ D +   ++  +   + +  
Sbjct: 241 DEINKETKNRSSTRVIKVDQHLLDILTQLRPNNHERLFIDPDGKIPTSSAVNKVLRKQLK 300

Query: 279 KAGVNKS---AHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADRIR 330
           K  +NK     H +R     +    G   + +    G   +   A TY    D ++
Sbjct: 301 KLNINKKNFHFHSLRHTHVAMLLFKGVNLYSISKRLGHSNMSITANTYAYMLDELK 356


>gi|262173546|ref|ZP_06041223.1| integron integrase IntI4 [Vibrio mimicus MB-451]
 gi|261890904|gb|EEY36891.1| integron integrase IntI4 [Vibrio mimicus MB-451]
          Length = 320

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 41/293 (13%), Positives = 88/293 (30%), Gaps = 55/293 (18%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWA 147
           A  +  ++  +  + I          +  K +   +       + A +  +       + 
Sbjct: 19  AKKTIEAYLHWITRYIYFHNKKHPSLMGDKEVELFLTHLAVNGNVAAKTQSLALNSLSFL 78

Query: 148 VRQEYVAINPCLSVE--RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLR 205
            + E + +   L +   R + + +     T++++++         + +L  + L  SGLR
Sbjct: 79  YK-EILKMPLSLEIRFQRSQLERKLPVVLTRDEIRRLLDVVDP--KYQLPAKLLYGSGLR 135

Query: 206 CSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLAMTPIGKETFFINN---- 259
             +  R  +Q +  +  +I+    K G   TV L       L       + ++  +    
Sbjct: 136 LMECIRLRIQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHLKEQIALAKRYYDRDLHQK 195

Query: 260 ------------------------------------------DKQKMNATQFSIWFKAKA 277
                                                      +  MN T      +  A
Sbjct: 196 NYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVMRRHHMNETVLQRTVRKSA 255

Query: 278 TKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
            +AG+ K+   H +R   AT   + GA    +    G   V   + Y    DR
Sbjct: 256 QEAGIEKTVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYAHVLDR 308


>gi|255692358|ref|ZP_05416033.1| integrase [Bacteroides finegoldii DSM 17565]
 gi|260621985|gb|EEX44856.1| integrase [Bacteroides finegoldii DSM 17565]
          Length = 291

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 49/286 (17%), Positives = 93/286 (32%), Gaps = 38/286 (13%)

Query: 88  AVNSRISFESY-------FDQIIRKS--GDFDYRKITTKHIRSGVESRKH----TPSSAI 134
              ++ ++  Y        + + ++    D   ++IT  HI +     +     + ++A+
Sbjct: 6   KTATQKTYSRYELTKQRMIEFLQKEYKLSDIPVKEITVTHIENFYLYLRQECEVSNNTAM 65

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQ 191
           +F+     +  +A +     I+P  + +    KT+     T+E++               
Sbjct: 66  KFVQRFHTILLFAQKSGLSFIDPFGNFKFNFDKTDRGY-LTQEEIDTIYYKEFKSKRLEH 124

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVELP----DGFM 242
            R AF F  Y+GL   D      + ++              KTG    + L     D   
Sbjct: 125 VRDAFIFSCYTGLPYCDIYTLSSEDIKIGVDGKKWIMKDRGKTGVESFIPLLQIPLDILA 184

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATIS-AD 299
           K       GK    I+N K        + +    A    +NK    H  R   AT     
Sbjct: 185 KYEGKLKNGKLLPVISNQK-------MNEYLAEIAAICQINKRITYHLARHSFATEICLT 237

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS--RRISSVV 343
            G     +    G   +   + Y +  DR      N   R++ S+ 
Sbjct: 238 KGVPIESVSKMLGHTNIQTTQIYARVVDRKLSHDMNMLDRKLKSMQ 283


>gi|154251504|ref|YP_001412328.1| integrase family protein [Parvibaculum lavamentivorans DS-1]
 gi|154155454|gb|ABS62671.1| integrase family protein [Parvibaculum lavamentivorans DS-1]
          Length = 380

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 48/328 (14%), Positives = 104/328 (31%), Gaps = 30/328 (9%)

Query: 23  YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS-PRKKPTTLKWLISEYRKS 81
           +  +     R             A+   +     + E  +S  RKKPTT   LI  +  +
Sbjct: 12  WRVQVRRKGRYIAETFRRHKEAEAWALDMERRIDQGEVPSSRTRKKPTTFGDLIDLHLAA 71

Query: 82  AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG---VESRKHTPSSAIQFLT 138
                 +   R S     D +  K G      +  + +             P +    L+
Sbjct: 72  LQEVGRSP--RRSKAFTLDALKAKLGKVRMADLNRERLIRFGKERLKEGAGPVTVGMDLS 129

Query: 139 SMRVLFKWAVRQEYVAINP-CLSVER---------PKRKTEGIRPWTKEDMQQFKSFWSE 188
            ++ +   A     +A++P  + + R          + ++   RP T +++++  +++  
Sbjct: 130 YIKTIITHAAAVHGIAVSPEAVDLARTALKHLGVVGRSRSRDRRP-TADELKRLIAYFDA 188

Query: 189 GSQPRLAFE----FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
             +  +       F + + +R  + CR     +  +  ++  +        +  D  + L
Sbjct: 189 NPRQLIPLARIIRFAVATAMRQDEICRIRWGDIDADTRTVLIRDRKDPRETDGNDQKVPL 248

Query: 245 LAMTPIGKETFFINNDKQ--------KMNATQFSIWFKAKATKAGV-NKSAHGVRKFSAT 295
           LA T                        NA      F+       + N   H +R   A+
Sbjct: 249 LAATGFDAWAILREQKTAVAKGDRIFPYNARSVGTAFRRACRDLKIENLHFHDLRHEGAS 308

Query: 296 ISADAGATAHELMATYGWKTVDQAETYT 323
              +AG T  ++    G +     + YT
Sbjct: 309 RLFEAGFTIEQVALVTGHRDWKMLKRYT 336


>gi|32455522|ref|NP_862274.1| ORF-2 [Lactobacillus sakei]
 gi|24461249|gb|AAN61996.1|AF438419_6 ORF-2 [Lactobacillus sakei]
          Length = 319

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/217 (15%), Positives = 76/217 (35%), Gaps = 10/217 (4%)

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           +       +   F W   ++++  +P   + + K      +  + ED+++ +   S   +
Sbjct: 105 TIDNIRRILSSFFSWLEDEDFIIKSPMRRIHKVKTIKVVNKTLSDEDLEKIRETASSY-R 163

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDG----FMKLLA 246
            R   EFL  +G+R  +     +  ++     +I   K  +   V           + L 
Sbjct: 164 DRAIVEFLASTGVRVGEIVNLDINAIRLAERSAIVLGKGNSEREVYFDARTKIHLERYLK 223

Query: 247 MTPIGKETFFINNDKQ--KMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGAT 303
                 E  F+++ +   ++         K    K+ VN    H  R+  AT + D G  
Sbjct: 224 TRTDKNEALFVSHKRPNNRLTIGTIESIVKKIGEKSLVNHVHPHKFRRTLATRAIDKGMP 283

Query: 304 AHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
             ++    G   +D    Y    ++  + I + + I 
Sbjct: 284 IEQVQKLLGHVRIDTTMNYA-MVNQTNVKISHRKYIG 319


>gi|294053866|ref|YP_003547524.1| integron integrase [Coraliomargarita akajimensis DSM 45221]
 gi|293613199|gb|ADE53354.1| integron integrase [Coraliomargarita akajimensis DSM 45221]
          Length = 448

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 44/308 (14%), Positives = 91/308 (29%), Gaps = 53/308 (17%)

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF-L 137
             +     +++ +  S+  ++   +R+    D   +T   ++  ++        A     
Sbjct: 135 LATMRRLGMSLRTERSYLGHYRNFVRQQSVQDGCSMTASAVKCYLDHMAMDRGVASSTQK 194

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE 197
            ++  L   A +   V +       R K         ++ +++         S+  L  E
Sbjct: 195 QALNALVFVAKQVFMVDLGEIGEYVRAKAGKRIPVVLSQAELRALFEQME--SEKLLMAE 252

Query: 198 FLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF 255
               SGLR S+  R  +Q L        I++ K      V L +     L       ETF
Sbjct: 253 VQYASGLRVSELVRLRIQDLDFSRGQIVIRSGKGNKDRIVPLSEKAAPGLRTHLELVETF 312

Query: 256 F-----------------INNDKQKMNATQFSIW-------------------------- 272
           F                 +              W                          
Sbjct: 313 FREDQERTDLAGVYLPEALARRHSNAGRDWRWQWVWPSRKVSVDPRSGKLRRHHVLDRAY 372

Query: 273 ---FKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
               +  A  AG+ K  ++H +R   AT   + G     +    G + ++  +TY     
Sbjct: 373 QRTIREAALAAGITKRVTSHALRHSFATHMLENGTDIRTVQDLLGHRRIETTQTYLHVMQ 432

Query: 328 RIRLGIKN 335
           ++  G+++
Sbjct: 433 KLGAGVES 440


>gi|312905527|ref|ZP_07764641.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0635]
 gi|310631256|gb|EFQ14539.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0635]
          Length = 349

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/276 (11%), Positives = 88/276 (31%), Gaps = 26/276 (9%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
           ++ TT       +        +   +  +++     + +  GD   + +    ++  ++ 
Sbjct: 55  ERTTTFADFFENWIHIIKKNDVKETTFQNYQRTSQVVKKLFGDIQLKDLNDIVVQRKIDK 114

Query: 126 RKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQQF 182
              T    +  + L  ++   + A  + Y+A +    V+ R K   +  R  +  ++++ 
Sbjct: 115 YAETHSRKTTHEVLLKIKTALRDAYARGYLATDFANLVKTRGKVLDKRNRALSITELKKL 174

Query: 183 KSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ----------KTG 230
           +++     +    +     L +G+R  +      + L      ++            KT 
Sbjct: 175 RTYVINHRENEFNILVLLALETGMRRGELLGIRPEDLFEYGIHVRRSLSPTSEDTSLKTK 234

Query: 231 -TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKA--TKAGVNK-SA 286
            +   + +      +L   PI    +F        +   F    K      K  + K + 
Sbjct: 235 NSRRDISINQEVYDILKSVPIKDNGYF-------FDPDGFQQSAKLARLLKKLDIPKTTF 287

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           HG+R   A+           +    G   +   + Y
Sbjct: 288 HGLRDTHASFLFSQDIDIAYVSKRLGHINIQTTQNY 323


>gi|239621712|ref|ZP_04664743.1| phage family integrase [Bifidobacterium longum subsp. infantis CCUG
           52486]
 gi|239515587|gb|EEQ55454.1| phage family integrase [Bifidobacterium longum subsp. infantis CCUG
           52486]
          Length = 309

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/285 (13%), Positives = 91/285 (31%), Gaps = 31/285 (10%)

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
           +  +     S++      G++   +   ++     + +   D    +      +  +   
Sbjct: 8   EEMSFCDYYSQWVDVYKEGAIREVTMKKYKLTQAWLRKLIPDLKLSEFDRVSYQKLINGY 67

Query: 127 KHTPS--SAIQFLTSMRVLFKWAVRQEYVAINPCLS--VERPKRKTEGIRPWTKEDMQQF 182
                  + + F   ++     AV +  +  +P     ++  + + + ++   + ++   
Sbjct: 68  AEHHEHQTTMDFHHQLKGAILDAVDEGLIQRDPTRKAIIKGKQPRQKKVKYLNQFELHAV 127

Query: 183 KSFWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSIKTQKT----------- 229
            +       P   +  LL   +GLR S++             ++   KT           
Sbjct: 128 LADLKLDPIPNWDWLILLVAKTGLRFSEALGLTPDDFDFVHQTLSVNKTWNYKNGGGFVP 187

Query: 230 --------GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281
                      +  +L      LL   P  K  F    D +  N+T   I  +    +AG
Sbjct: 188 TKNASSVRKVQLDWQLIMQLSVLLKSLPGDKPIFV---DGKVYNSTANGILARH-CKQAG 243

Query: 282 VNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
           V   S HG+R   A++   AG +   +    G  +++   E Y  
Sbjct: 244 VPVISIHGLRHTHASLLLFAGVSIASVSKRLGHASMNTTQEIYLH 288


>gi|162456070|ref|YP_001618437.1| integrase/recombinase [Sorangium cellulosum 'So ce 56']
 gi|161166652|emb|CAN97957.1| integrase/recombinase [Sorangium cellulosum 'So ce 56']
          Length = 358

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 77/223 (34%), Gaps = 23/223 (10%)

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQ 180
           +R H P+S  + + + R L ++  R+  V  N    +  PK +         +     M+
Sbjct: 113 ARTHAPASIARKVGAARALLRYLERRGEVDKNAAAQLALPKVRRPLPTFLDVDAAAEVME 172

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN---NIFSIKT-QKTGTIITVE 236
              +  +EG + R   E L  +GLR S+ C   + H+     +  +++   K      V 
Sbjct: 173 IPGAETAEGLRDRAMLETLYGAGLRVSELCGLDLTHVDRRPADRAAVRVVGKGDKERIVP 232

Query: 237 LPDGFMKLLAM-------------TPIGKETFFINNDKQKMNATQFSIWFKAK-ATKAGV 282
           L    +  +                       F++    ++   +     +   A  AG 
Sbjct: 233 LGSHALAAIERYLERRDELADPTTGARDPRALFLSRRGARIGVRRVQALVQRYGALGAGR 292

Query: 283 -NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            +   H +R   AT   D GA    +    G  ++   + YT 
Sbjct: 293 ADLHPHALRHTCATHLLDGGADLRAIQKLLGHASLATTQRYTH 335


>gi|134296858|ref|YP_001120593.1| phage integrase family protein [Burkholderia vietnamiensis G4]
 gi|161523826|ref|YP_001578838.1| integrase family protein [Burkholderia multivorans ATCC 17616]
 gi|189351412|ref|YP_001947040.1| integrase/tyrosine recombinase [Burkholderia multivorans ATCC
           17616]
 gi|206559342|ref|YP_002230103.1| putative phage-related integrase [Burkholderia cenocepacia J2315]
 gi|134140015|gb|ABO55758.1| phage integrase family protein [Burkholderia vietnamiensis G4]
 gi|160341255|gb|ABX14341.1| integrase family protein [Burkholderia multivorans ATCC 17616]
 gi|189335434|dbj|BAG44504.1| integrase / tyrosine recombinase [Burkholderia multivorans ATCC
           17616]
 gi|198035380|emb|CAR51256.1| putative phage-related integrase [Burkholderia cenocepacia J2315]
          Length = 456

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 44/285 (15%), Positives = 97/285 (34%), Gaps = 38/285 (13%)

Query: 64  PRKKPTT--LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK---H 118
           PR    +     +++ Y       ++A  +    E  +D+     GD D  + +      
Sbjct: 135 PRATQKSELFSTVVTLYLTEKKIDNVA-KTLYDKERVYDEFKSFFGDLDVNQYSPDQAVA 193

Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYV-AINPCLSVE-----RPKRKTEGIR 172
            ++ + +   + S+     + +R LF++A+        NP   V+     + K++    +
Sbjct: 194 YKNRLLALGGSASAINAKTSFLRSLFEYAINNNLFFTANPFERVKISTKAKLKKQVRSYK 253

Query: 173 PWTKEDMQ------QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSI 224
           P+  +D++      ++++F  +     L F   LY+G R  +     +  +   + +   
Sbjct: 254 PFEDDDLKIIFEELKYRAFLKKPDYHWLPF-LSLYTGARVEELASLRLDQITKVDGVLVF 312

Query: 225 KTQ----KTGTIIT-VELPD--------GFMKLLAMTPIGKETFFINNDKQKMNATQFSI 271
             Q    K    +  + LPD         +++ +  T        + + K   +    S 
Sbjct: 313 DIQHDAAKNSNSVRKIPLPDVILKSKFLDYVEQVKATKATHLFPHLKDGKNGFSKNM-SR 371

Query: 272 WFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGW 313
            F     K  +    K  H  R        +       LMA  G 
Sbjct: 372 RFGEYLDKLEIKDDRKVFHSFRTTFINSMTNLNVHPAILMAIVGH 416


>gi|254497048|ref|ZP_05109875.1| conserved hypothetical protein [Legionella drancourtii LLAP12]
 gi|254353740|gb|EET12448.1| conserved hypothetical protein [Legionella drancourtii LLAP12]
          Length = 413

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 55/332 (16%), Positives = 112/332 (33%), Gaps = 31/332 (9%)

Query: 23  YYFRKGH-GRRIRLPYPHEST---------FIPAYMSALTGSTPKREYINSPRKK-PTTL 71
           +++R  H G+   L   H            F   +     G  P+      P  +  TT+
Sbjct: 41  WFYRYKHNGKEKWLTLGHFPAMGVAEARNLFNELWNKRQNGENPEEYLKQEPESQIDTTV 100

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHT 129
           + L++E+         A   +   +  +  II   GD    K+ TK I   ++    + +
Sbjct: 101 EQLVTEWYSGYIEKHRAHP-QQIKQIIYADIIPLLGDKKLAKLKTKEITLALDKIVNRGS 159

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV---ERPKRKTEGIRPWTKEDMQQFKSFW 186
           P  A + L +++  F +   +  +  NP  ++   +    +    R  T E++++   F 
Sbjct: 160 PIHANKVLAALKQAFNYGESRGDMLSNPAANIRARDIGGLEKARERYLTLEEIKELWHFL 219

Query: 187 S-----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIITVEL 237
                    Q + + + +L +G+R  +   A       +           KTGTI+ V L
Sbjct: 220 DSDKNHISVQIKNSLKIILLTGVRGGELRVAKWSEFDFDKSLWTIPAVNTKTGTILRVHL 279

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNA---TQFSIWFKAKATKAGVN-KSAHGVRKFS 293
                 LL        + ++ +    ++                +  +   + H +R+  
Sbjct: 280 TPFMKSLLLELKKNNSSEYVISGLNGLSCLSDKAIPKAVNRIQERLNIPQWTPHDLRRTF 339

Query: 294 ATISADAGA-TAHELMATYGWKTVDQAETYTK 324
           AT   +        +    G K      TY K
Sbjct: 340 ATQLGETLNIDPVVIEKCLGHKMPKIMATYNK 371


>gi|218203858|ref|YP_002364713.1| integrase family protein [Cyanothece sp. PCC 8801]
 gi|218169645|gb|ACK68381.1| integrase family protein [Cyanothece sp. PCC 8801]
          Length = 311

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 45/284 (15%), Positives = 103/284 (36%), Gaps = 32/284 (11%)

Query: 85  GSLAVNSRISFESYFDQIIR--KSGDFDY-----RKITTKHIRSGVESR--KHTPSSAIQ 135
            SL   SR++     + I     +G+ DY      K+T +H  +   +   +H P++A +
Sbjct: 26  RSLNPRSRVTMRGALNAIASLLTNGECDYMTLDWAKLTYQHTSAVQAALLERHAPATAAR 85

Query: 136 FLTSMRVLFKWAVRQEYVAIN---PCLSVERPKRKTEGI-RPWTKEDMQQFKSFWS---- 187
            + ++R + K A R   ++ +     + +   +   +   R  ++++++   +       
Sbjct: 86  MMCALRRVLKEAKRLGLMSGDDYQTAIDLPSIRESRKLRGRALSQDEIRGLMAVCENDPT 145

Query: 188 -EGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKL 244
            +G +       L  +GLR +++ +  ++    +     I   K      V LP+  + +
Sbjct: 146 TQGIRDAALIAILRGAGLRRAEAVKLQLKDFTQEAGSLQIIGGKGDKDRLVYLPESAISI 205

Query: 245 LAM-----TPIGKETFFINNDK-----QKMNATQFSIWFKAKATKAGVNK-SAHGVRKFS 293
           +                          + M++    +  + +A  AGV   S H  R+  
Sbjct: 206 VNRWLEVRGFTPGALLCPIQKGGRIVIRSMSSQSVLLIVQKRAIAAGVESFSPHDFRRTF 265

Query: 294 ATISADAGATAHELMATYGWKTVDQAETY-TKGADRIRLGIKNS 336
            +   DAG     +    G  +      Y  +G    R  ++N 
Sbjct: 266 CSDLLDAGVDIVTVQKLAGHASPVTTAKYDRRGEAVKRRAVQNL 309


>gi|311120291|gb|ADP69248.1| putative integrase [Leuconostoc phage phiMH1]
          Length = 356

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 41/278 (14%), Positives = 85/278 (30%), Gaps = 24/278 (8%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HTPSSA 133
            ++        L   ++  + +    + +K G+    +IT+K  +  +      H  SS 
Sbjct: 65  EDWYHIFKEPQLQTATKQWYRTTLSLLTKKWGNKKMSEITSKDFQLLINEYGAEHVKSSV 124

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVER---PKRKTEGIRPWTKEDMQQFKSFWSEGS 190
                      ++A+ +  +  +   +V      K K + ++   +++M++     SE  
Sbjct: 125 SHIKNITSAFIRYAIDEGLIIRDFTRNVNTYSIVKSKDKSLKFLEEDEMKKLIIXASESD 184

Query: 191 QPRLAFEF-LLYSGLRCSDSCRAGVQHLQ---------------NNIFSIKTQKTGTIIT 234
                     LYSGLR S+                         +  F     KT     
Sbjct: 185 AVTSHMILTALYSGLRFSEVAGLTKDDFDFKNNTVSVNKSWQIHDQAFKETKTKTSNR-E 243

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFS 293
           + +   FM        G+   F   +    +    +   K    K      + HG+R   
Sbjct: 244 ITISSEFMNKAKKWTFGERFAFQGENDTPPSDNAANKQLKRFLEKDNSTVITFHGLRHTH 303

Query: 294 ATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIR 330
           A+       +   +    G   V+    TY    ++ R
Sbjct: 304 ASFLLSKDISIQYVSERLGHADVNITLSTYAHLLEKKR 341


>gi|46202519|ref|ZP_00053088.2| COG0582: Integrase [Magnetospirillum magnetotacticum MS-1]
          Length = 317

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 43/315 (13%), Positives = 103/315 (32%), Gaps = 28/315 (8%)

Query: 27  KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR-KKPTTLKWLISEYRKSAHWG 85
           +  G   R     + T    +   L     +  ++   +  + TTL  +++ YR+     
Sbjct: 3   RRKGTAPRSKSFDKKTDAEKWARDLEAEVDRCGFLPDTKLAEDTTLADIMTRYRE----- 57

Query: 86  SLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTSM 140
            +    R +    F     +           +++  I +  + R     P++ ++ + ++
Sbjct: 58  EVTPRKRGAKIEVFRINAMLRHDIMHRTLALLSSSDIAAYRDERLQSVGPAAVVREIATI 117

Query: 141 RVLFKWAVR--QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP--RLAF 196
                 A++    Y+  NP   V RP       R    ++ Q+  +    G     +   
Sbjct: 118 SQAIDTAMKDWNIYLVRNPAKLVRRPSLPRGRDRRLEGDEEQRILAACDRGRIRWLKPMV 177

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLLAMT---PIG 251
              + + +R  +        +  +     +   K G+   V L    ++ L+     P  
Sbjct: 178 VLAVETSMRRGEMLSLRWSDIDLDRRVAHLSMTKNGSSRDVPLSTRAVETLSGLMQQPDR 237

Query: 252 KE--TFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMA 309
                F ++ +  ++   +       +      N + H +R    +   + G    E+ A
Sbjct: 238 DPEKVFMVSENAVRLAWDRLRNRIGLE------NINFHDLRHEGVSRLFEKGLDVMEVSA 291

Query: 310 TYGWKTVDQAETYTK 324
             G KT+   + YT 
Sbjct: 292 ISGHKTLTMLKRYTH 306


>gi|317505600|ref|ZP_07963509.1| integrase [Prevotella salivae DSM 15606]
 gi|315663284|gb|EFV03042.1| integrase [Prevotella salivae DSM 15606]
          Length = 414

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 49/283 (17%), Positives = 87/283 (30%), Gaps = 46/283 (16%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE---SRKHTPSSAIQFLTSMRV 142
                +   F +  + +   +   ++ K     I   ++    +    S+  + L  +R 
Sbjct: 131 DWTPATFEKFAALRNHLSEFNKKLNFDKFDENGIADFIDYLGKKGMRNSTINKQLGFLRW 190

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRP--WTKEDMQQFK-----SFWSEGSQPRLA 195
             +W   + Y   N      +PK K    R    T+E++++ +       ++     R  
Sbjct: 191 FLRWCYEKGY-HTNHTFEYFKPKLKNASKRVIFLTQEELEKVENLTIPKQYTSLESVRDV 249

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM-----TPI 250
           F F  Y+GLR SD        + N    I T KT   I +EL      +L        P 
Sbjct: 250 FLFCCYTGLRYSDVYNLTWDDIHNGKIEIVTVKTADRIMIELNSKSQAILNKYSEISFPG 309

Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA-----------------------H 287
            K    I+N K        +         AG+N+                         H
Sbjct: 310 KKVLPVISNQK-------MNTRLHTLCKLAGINEPIKTTHYEGNKRVDEVKPKYELVGTH 362

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
             R+     +   G     +M   G       + Y   AD ++
Sbjct: 363 CGRRTFICTALSKGIPPSVVMKWTGHSDYKAMKPYIDIADEVK 405


>gi|294783290|ref|ZP_06748614.1| site-specific recombinase, phage integrase family [Fusobacterium
           sp. 1_1_41FAA]
 gi|294480168|gb|EFG27945.1| site-specific recombinase, phage integrase family [Fusobacterium
           sp. 1_1_41FAA]
          Length = 405

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 47/315 (14%), Positives = 101/315 (32%), Gaps = 52/315 (16%)

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFES-----YFDQIIRKSGDFDYRKITTKHIRS 121
           K  +    I  Y K   + ++   +  S+ S           ++  +   + I T  I+ 
Sbjct: 83  KEISFCNFILGYVK-MRFKTIDDATYSSYLSNTKISILPYFFKE--NKKLKDINTFDIQK 139

Query: 122 G----VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
                +  R  + ++ I +   + + FK+A +   + INP L+VE+PK+     + +  E
Sbjct: 140 YYFHELNVRGVSANTVIHYHNLLSLTFKYAQKIGVININPMLNVEKPKKVRYIAKVYNYE 199

Query: 178 DMQQFKSFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQ------------------HLQ 218
            +++         +   L      + GLR S+                         +L 
Sbjct: 200 QIKEMLEILKREDKALYLGVVITSFFGLRRSELLGLKWSAINFADNTMSIIHTVTETNLN 259

Query: 219 NNIFSIKTQKTGTIITV-------ELPDGFMKLLAMTPIGKE------------TFFINN 259
                IK  KT +   +        + +  ++L       KE              ++N 
Sbjct: 260 GKNVLIKKDKTKSTAGLRSFVLPGSIKEMLLELKEEQKRNKERLGKGYYKKDEEYVYVNE 319

Query: 260 DKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
             +       +  F+    K  +     H +R   ATI  ++     ++    G  +   
Sbjct: 320 GGELHKPKFLTNGFRKFLAKHNLTHIRFHDLRHSCATILCESNVNVKDIQMFLGHSSAKT 379

Query: 319 A-ETYTKGADRIRLG 332
             + Y    ++  L 
Sbjct: 380 TMDIYVHQMNKSNLS 394


>gi|238790900|ref|ZP_04634651.1| Phage integrase [Yersinia frederiksenii ATCC 33641]
 gi|238721020|gb|EEQ12709.1| Phage integrase [Yersinia frederiksenii ATCC 33641]
          Length = 325

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/196 (17%), Positives = 68/196 (34%), Gaps = 10/196 (5%)

Query: 55  TPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI 114
           TP          +  TL   +  Y        LA N+    +     I  K G     KI
Sbjct: 62  TPVALLEKLKGTQEYTLAAWLKRYDVIYKRRELAENTYKVRKGQIAMISEKLGSNVLTKI 121

Query: 115 TTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
           +T+H+   +E    +   + A    + +  +F+ A+ + ++  NP       K   +  R
Sbjct: 122 STRHVAEFLEFWVAQDKKTMAATMRSVLSDIFREAIVEGHIENNPVTPTRSAKPVVKRER 181

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAF----EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
                ++ Q+ +  +  +     F    +  L +G R  D        + +    I   K
Sbjct: 182 L----ELDQYLAIRNVANTLPAWFGLSMDLALVTGQRREDLTLMRFDQIVDGRLQIDQGK 237

Query: 229 TGTIITVELPDGFMKL 244
           TG +I++ L      +
Sbjct: 238 TGAMISLPLDLELKAV 253


>gi|238791267|ref|ZP_04634906.1| Phage integrase [Yersinia intermedia ATCC 29909]
 gi|238729400|gb|EEQ20915.1| Phage integrase [Yersinia intermedia ATCC 29909]
          Length = 430

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 47/300 (15%), Positives = 93/300 (31%), Gaps = 37/300 (12%)

Query: 59  EYINSPRKKPTTLKWLISEY-------RKSAHWG-----SLAVNSRISFESYFDQIIRKS 106
           E    P+    T++ L+  Y       RKS               +    +  +  + K 
Sbjct: 104 EESQKPKAAVLTVEGLVELYLTERIEDRKSNDGKIIPGARKKKGQKEVRRTLENDAVAKL 163

Query: 107 GDFDYRKITTKHIRSGVESRKHTPS--SAIQFLTSMRVLFKWAVRQEYVAIN---PCLSV 161
           G     +IT K I   V       +   A   L  +   +++A+       N   P L  
Sbjct: 164 GARVAAEITRKDIVELVNGVIERGAKVQAGNLLRELSSAYEFAIGLGRFDDNFANPALLA 223

Query: 162 ERPKRKT-------EGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSC 210
           +   R+T        G R  +++++ +F   W  GS      +      L++G R  + C
Sbjct: 224 KSSLRQTNIKLTCERGTRILSEKELAKFL-HWLPGSAYTPTIKNVLRLTLWTGCRTGEVC 282

Query: 211 RAGVQHLQN--NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI--NNDKQKMNA 266
               + +        ++  KTG    V+L D  +  L +  +  + +       K+ +  
Sbjct: 283 NMAWEDVDLNKGTIHLRETKTGVERYVQLSDQAIDFLKILRLNSDKYLFPSQATKKPIQQ 342

Query: 267 TQFSI---WFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
              +      +       +   + H +R+   T  +          A  G         Y
Sbjct: 343 KYLTENSWRLRESGQMLDIPHWTPHDLRRTVRTGLSRLQCPNEVAEAVLGHTRGGVEGIY 402


>gi|327202836|gb|AEA37902.1| site-specific recombinase [Streptococcus agalactiae]
          Length = 379

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 62/356 (17%), Positives = 120/356 (33%), Gaps = 47/356 (13%)

Query: 10  FVTKERTRHGKIIYYFR--------KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYI 61
            VT++  + GK  YYF+        K +  R R     +  F      A T +  K    
Sbjct: 8   GVTRD-DKTGKYTYYFKAGVDLATGKPYQERRRGFETAKEAF-----EARTRALNKVHQK 61

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121
              +    T K  + E     ++ + + +     +  FD+ I+  G    R+ITT  + +
Sbjct: 62  GGIKHTQWTFKQFMDEVFIPNYYATTSPDLERRRQIIFDEFIQYFGKKKPREITTYDVIN 121

Query: 122 GVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAIN-PCLSVERPKRKTEGIRPWTKED 178
              S   K++ S A   +  +  + K A +   +    P  ++       + I  WTK++
Sbjct: 122 YRNSLLEKYSNSYARNKMALLNQVLKTAKKYGLIFHEIPTSNISPIPITKKHIDFWTKDE 181

Query: 179 MQQFKSFWSEGSQ-PRLAFEFL---LYSGLRCSDSCRAGVQHLQ---------------- 218
            Q+      + S      +  L    ++G+R +++     + +                 
Sbjct: 182 FQKVIQSLDKESYFEHFIYTLLWLYYFTGMRVNEATALYWEDVDFEKKTLAINHNLQYIN 241

Query: 219 -NNIFSIKTQKT-GTIITVELPDGFMKLL-----AMTPIGKETFFINNDKQKMNATQFSI 271
             N       KT  +  T+ L D  +K+L         + K  F ++ D           
Sbjct: 242 RENWERRNKLKTESSRRTIGLDDNTLKVLKEWKERQEKVDKIPFILSPDGVPYRKRSIRD 301

Query: 272 WFKAKATKAGVNK-SAHGVRKFSATISA-DAGATAHELMATYGWKTVDQA-ETYTK 324
                + +AGV      G+R   A++   +    A  +    G   V      Y+ 
Sbjct: 302 QILKYSKRAGVKYIQPKGLRHSHASLLINEYNVNALYIQRRLGHSDVKTTLSIYSH 357


>gi|307293938|ref|ZP_07573782.1| integrase family protein [Sphingobium chlorophenolicum L-1]
 gi|306880089|gb|EFN11306.1| integrase family protein [Sphingobium chlorophenolicum L-1]
          Length = 345

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 43/239 (17%), Positives = 78/239 (32%), Gaps = 27/239 (11%)

Query: 106 SGDFDYRKITTK--HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163
            GDF  R+      H R    +  H P+   ++    +      V  E   + P L ++ 
Sbjct: 98  IGDFSLREPKQAWEHFRRAYLT-GHDPAGQDRYRAVFQAAIN--VHHELHDL-PPLRIKA 153

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ----HLQN 219
                E +R  +KED  +  + +S   QP      L + G R   + +         ++ 
Sbjct: 154 IPFNNERVRFLSKEDRDRLIASYSPHIQP--IITLLAFHGPRIQTALQLSWGVEGVDMKE 211

Query: 220 NIFSIKTQKTGTIITVELPDGFMKLLA-----MTPIGKETFFINNDKQKM---------N 265
               +   K   I +V +    M +L           K   F+N   +            
Sbjct: 212 GSIRLNHTKNAIIRSVPMHPRVMDVLRPIWEARGRPTKGHVFLNRFGKPYQDTRKAKIPG 271

Query: 266 ATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
                        +AG+ + + H  R   A+    AG     +M   GWK++   + Y+
Sbjct: 272 GNPIKNQHATACQRAGIEDFTVHDWRHHWASHCVMAGIDLITIMNMGGWKSLRMVQRYS 330


>gi|255012552|ref|ZP_05284678.1| integrase [Bacteroides sp. 2_1_7]
 gi|256839009|ref|ZP_05544519.1| integrase [Parabacteroides sp. D13]
 gi|298374561|ref|ZP_06984519.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           3_1_19]
 gi|301308234|ref|ZP_07214188.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           20_3]
 gi|256739928|gb|EEU53252.1| integrase [Parabacteroides sp. D13]
 gi|298268929|gb|EFI10584.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           3_1_19]
 gi|300833704|gb|EFK64320.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           20_3]
          Length = 310

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 45/287 (15%), Positives = 97/287 (33%), Gaps = 36/287 (12%)

Query: 90  NSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLF 144
           ++  S++             +       + T    +S + ++    ++   ++  +R ++
Sbjct: 24  STAKSYQDALRSFKCFCGREEIPYAYINRDTLLRYQSWLLAKGCARNTVSTYMRRIRHIY 83

Query: 145 KWAVRQEYVAINP------CLSVERPKRKTEGIRPWTKEDMQQFKS---FWSEGSQPRLA 195
             AV     A  P         VE  ++K         E ++   +      +  + + A
Sbjct: 84  NLAVEVGEAAYIPHLFKHVFTGVESKRKK-----ALPSESLRLLMTSPVTDPQQKRTQSA 138

Query: 196 FEFL-LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG----FMKLLAMTPI 250
           F  + L+ G+   D      + ++  I S   QK+G++I VE+P        +L A T  
Sbjct: 139 FCLMFLFCGMAFVDLAHLRKEDIKEGILSYYRQKSGSLIQVEIPAEAQGLLNELAADTTE 198

Query: 251 GKETFFINNDKQKMNAT----------QFSIWFKAKATKAGVN--KSAHGVRKFSATISA 298
                F   +  K               F+   K  +   G++   +++ +R   AT   
Sbjct: 199 DSPYLFPFLEGMKTGEDAYKEYNTVLGGFNRRLKILSESIGIHTRVTSYTIRHSFATTLK 258

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345
           +       +    G K++   + Y K     +L   N     SV + 
Sbjct: 259 EQNVPIEMISELLGHKSIKTTQIYLKSFSLEKLSTVNKLCFESVYNY 305


>gi|299822017|ref|ZP_07053904.1| tyrosine recombinase XerC [Listeria grayi DSM 20601]
 gi|299816645|gb|EFI83882.1| tyrosine recombinase XerC [Listeria grayi DSM 20601]
          Length = 309

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/282 (14%), Positives = 91/282 (32%), Gaps = 36/282 (12%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT- 129
            +  I  Y+     G++   +   +     ++   +       +  K  +  +     T 
Sbjct: 15  FEEWIELYKV----GAVRDVTLQKYYMTHQRLEELAPQLKIGSLDRKSYQKLLNDYALTH 70

Query: 130 -PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV--ERPKRKTEGIRPWTKEDMQQFKSFW 186
              + + F   ++     AV +  +A NP   +  +  K + +  +   + ++Q      
Sbjct: 71  EKQTTMDFHHQLKGSILDAVDEGLIAKNPTRKIIIKGRKAREKKPKFLNQFEVQAMLKQL 130

Query: 187 SEGSQPR-LAFEFLLY-SGLRCSDSCRAGVQHLQ---------------NNIFSIKTQKT 229
              ++     F  L+  +GLR S++                          I   +  K 
Sbjct: 131 KLTNEINWDWFILLVAKTGLRFSEALALTPNDFDFSKQKLAVSKTWNYKGTIGEFQPTKN 190

Query: 230 GT-----IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284
            +      I  +    F +L+      K  F     K ++  +  +   K    +AG+  
Sbjct: 191 NSSKRKIQIDWQTAMQFSQLIKEIDPDKPIFV----KSRVFNSTVNNRLKTLCVEAGIPI 246

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
            + HG+R   A++   AG +   +    G  ++    ETY  
Sbjct: 247 ITIHGLRHTHASLLLFAGVSIASVATRLGHSSMTTTQETYLH 288


>gi|256826767|ref|YP_003150726.1| site-specific recombinase XerD [Cryptobacterium curtum DSM 15641]
 gi|256582910|gb|ACU94044.1| site-specific recombinase XerD [Cryptobacterium curtum DSM 15641]
          Length = 307

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 43/276 (15%), Positives = 92/276 (33%), Gaps = 31/276 (11%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HTPSSA 133
           + + K    G++   +   +      + +   +     +T    +  +      H   + 
Sbjct: 15  TRWVKVYKEGAIRDVTMDKYRLTQSWLDKLVPNLRLCDLTRISYQQLINDYAEHHERQTT 74

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSV--ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           + F   ++     AV +  +  +P   V  +  + K + I+   + ++    +    G +
Sbjct: 75  MDFHHQLKGSILDAVDEGLIPRDPTRKVIIKGRQPKPKKIKYLNQFELHAMLADLDLGKE 134

Query: 192 PRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSIKTQKT-------------------G 230
             L +  LL   +GLR S++             ++   KT                    
Sbjct: 135 ATLDWLILLIAKTGLRFSEALGLMPADFDFTHQTVSVNKTWDYKRNGGFVPTKNVSSVRK 194

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGV 289
             +  +L      LL   P  K  F    D +  N+T   +  +    +AGV   + HG+
Sbjct: 195 VQLDWQLVMQLAGLLKELPAEKPIFV---DGKVYNSTANGVLARH-CKRAGVPVITIHGL 250

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
           R   A++   AG +   +    G  ++    ETY  
Sbjct: 251 RHTHASLLLFAGVSIASVSRRLGHASMTTTQETYLH 286


>gi|294341251|emb|CAZ89653.1| putative phage integrase [Thiomonas sp. 3As]
          Length = 334

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 50/328 (15%), Positives = 102/328 (31%), Gaps = 32/328 (9%)

Query: 15  RTRHGKI-IYYFRKGHGRRIRLPYPHESTFI---PAYMSALTGSTPKREYINSPRKKPT- 69
             + GK      R+    R        +TF     AY+            +      P  
Sbjct: 4   VVKRGKTFRAQVRRNGASR-------SATFDTKAAAYVWVEQVEREIGAGVTGGSAAPAG 56

Query: 70  -TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-- 126
            T   L+  YR            R         +     +    ++    + +  + R  
Sbjct: 57  ATFAKLLERYR--DDVSEYKRGKRWEVTRINLTLRDAIAEVPLVRLAQPAVAAWRDRRLK 114

Query: 127 KHTPSSAIQFLTSMRVLFKWAV-RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ--FK 183
           + +P+S  +    +      AV    ++A NP   V RP       R  T+ ++ +  F 
Sbjct: 115 QVSPASVQREWNLLSHACSLAVKEWHWLAENPFTGVRRPPPTPPRDRLATEAELDRILFA 174

Query: 184 SFWSEGSQP-------RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII-TV 235
             +  G +P         A  F + +G+R  +  +     +   + ++++ KT      V
Sbjct: 175 LSYQPGQRPSTISERIGAAAVFAVETGMRVGEIAKLTWADVAPTVVTVRSGKTAAATRRV 234

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSA 294
            L      +L+      +   +      +N +Q    ++     A + +   H +R  + 
Sbjct: 235 PLSPVAQTVLSGLKP--DPVDLTARVFDLNTSQIDSLWRKAKKLAMIEDLHFHDLRHTAV 292

Query: 295 TISADAGATAHELMATYGWKTVDQAETY 322
           T  A       +L    G K +   + Y
Sbjct: 293 TRLAKK-LPILDLARMIGHKDLRMLQIY 319


>gi|257891036|ref|ZP_05670689.1| integrase [Enterococcus faecium 1,231,410]
 gi|257894289|ref|ZP_05673942.1| integrase [Enterococcus faecium 1,231,408]
 gi|260562321|ref|ZP_05832835.1| predicted protein [Enterococcus faecium C68]
 gi|257827396|gb|EEV54022.1| integrase [Enterococcus faecium 1,231,410]
 gi|257830668|gb|EEV57275.1| integrase [Enterococcus faecium 1,231,408]
 gi|260073245|gb|EEW61586.1| predicted protein [Enterococcus faecium C68]
          Length = 382

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 58/385 (15%), Positives = 124/385 (32%), Gaps = 53/385 (13%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPH----ESTFIPAYMSALTGSTPKREYIN 62
           L  +V + +    K I  +   +  + R                    L      +E + 
Sbjct: 2   LKVWVEQTKDGRFKFIERYVDPYTEKTRKKSTTLTSNSPQAWKKAQKILDKKI--KEALE 59

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRIS---FESYFDQIIRKSGDFDYRKITTKHI 119
              K   T   L  E+ +         +        +     I   +   +  +     I
Sbjct: 60  DYNKSDITFGELYKEWYEYYKQHVKRTSYLKVPMMMKHVSKHISDDTIVRNIDETLINKI 119

Query: 120 RSGVESRKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWT-- 175
              + +    + +   Q  T++ V+  +A+ ++Y+  NP L+V+  PK+  E  R  +  
Sbjct: 120 IEDMYTFGDLSLNYTKQTKTTLSVMLNYAIDRKYIQRNPALAVKIHPKKVEEEKRRLSMN 179

Query: 176 -----KEDMQQFKSFWSEGSQPRL---AFEFLLYSGLRCSDSCRAGVQHLQNNIFSI--- 224
                KE++ Q         + +L     EFL  +GLR  +     ++  ++   SI   
Sbjct: 180 KKYLEKEEIDQILKQLYSNPRRKLHGIIAEFLYLTGLRYGELLALQMKDYEDGKISINGT 239

Query: 225 --------------KTQKTGTIITVELPDGFMKL---------LAMTPIG-KETFFINND 260
                           + T +   V+LP+   +L         LA  P    +  FI+  
Sbjct: 240 LDYTSVKMDNAIKTTPKNTYSQREVQLPNRAKELIESVIADNILAGRPTDPDQYIFISTS 299

Query: 261 KQKMNATQFSIWFKA--KATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
              +    F+       +  +   + S+H  R    ++ ++ G     +M   G    + 
Sbjct: 300 GTPLALHSFNAILHKVEEELELEKSLSSHIFRHSHVSLLSELGVPLKAIMERVGHSDANT 359

Query: 319 A-ETYTKGADRIRLGIKNSRRISSV 342
               Y     R +  +    +++S+
Sbjct: 360 TLSIYNHVTKRAKQQV--IDKLNSL 382


>gi|210612842|ref|ZP_03289495.1| hypothetical protein CLONEX_01697 [Clostridium nexile DSM 1787]
 gi|210151395|gb|EEA82403.1| hypothetical protein CLONEX_01697 [Clostridium nexile DSM 1787]
          Length = 409

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 58/378 (15%), Positives = 104/378 (27%), Gaps = 61/378 (16%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
            ++ K     G   Y +          P P      P+            E       K 
Sbjct: 36  KYLYKYVDAFGNTKYVYAWRLTP--TDPTPKGKREKPSLRELEQQIRRDIEDGIDSTGKK 93

Query: 69  TTLKWLISEY-RKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRSGVESR 126
            T   L   Y +++    ++  ++    E     +   K G      I     +      
Sbjct: 94  MT---LCQLYAKQNTQRANVKKSTMKQREQLMRLLKEDKLGARSIDTINPSDAKEWALRM 150

Query: 127 KHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPC--LSVERPKRKTEGIRPWTKEDMQQ 181
           K      ++      S++  F  A++ + V  NP      E  +  T+     T+E  Q 
Sbjct: 151 KDKGFSYNTINNHKRSLKASFYIAIQDDCVRKNPFDFKLSEVLENDTKEKVALTEEQEQA 210

Query: 182 FKSFWSEGSQPRLAFE---FLLYSGLRCSDSCRAGVQHLQ------------------NN 220
             SF    +     ++    LL +GLR S+ C   +  +                     
Sbjct: 211 LLSFIKTDNVYHKHYDDVLILLKTGLRISELCGLTIMDVDFIHEVVVIDHQLLKSKEQGY 270

Query: 221 IFSIKTQKTGTIITVELPDG----FMKLLAMTPIG--------KETFFINNDKQKMNATQ 268
                  K+GT   V L       F +++   P              F+N   +   A  
Sbjct: 271 YIETPKTKSGTR-QVPLSKETIQAFQRVMKKRPKAEPFVIDGRGNFLFVNQKGKPKVAID 329

Query: 269 FSIWFKAKATKAGVNK--------SAHGVRKFSATISADAGATAHELMATYGWKTVD--- 317
           +++ F     K   +         + H +R    T  A       +L    G   +    
Sbjct: 330 YNMLFVRMVKKYNKHHKDSPLPHITPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISITM 389

Query: 318 ----QAETYTKGADRIRL 331
                A   T  ++  RL
Sbjct: 390 NWYAHASIDTVKSEVQRL 407


>gi|118578673|ref|YP_899923.1| phage integrase domain/SAM domain-containing protein [Pelobacter
           propionicus DSM 2379]
 gi|118501383|gb|ABK97865.1| phage integrase domain protein SAM domain protein [Pelobacter
           propionicus DSM 2379]
          Length = 362

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 45/302 (14%), Positives = 91/302 (30%), Gaps = 40/302 (13%)

Query: 64  PRKKPTTLKWLISEYR-KSAHWGSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIR 120
           P   P  L+  +  +  +    G    ++  ++ S+ +  +R   +       +T   + 
Sbjct: 21  PDNLPADLEAAVRNWLEREVALGDPREDTIKTYTSHLNHWLRWCNARGITPAAMTQADVE 80

Query: 121 SGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP--KRKTEGIRPWT 175
           S            SS    LT +R  ++ A+ +  + INP  +V  P  +      +  T
Sbjct: 81  SFRHELIQAGMKASSIAVKLTVIRRFYQVAMNRGLITINPAANVRPPVAREAKSEQKHLT 140

Query: 176 KEDMQQFKSFWSE-----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT---Q 227
               +       E     G + R     +L  GLR  +  RA V+ +++    ++     
Sbjct: 141 AGQAELLIMHLPELGSIKGLRDRAIIALMLLEGLRRVEIKRANVEDIEDVEGGVRILVHG 200

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFI--------------------NNDKQKM-NA 266
           K          D    + A      E                        N   +   + 
Sbjct: 201 KRKDGYIYPREDTVAAIRAYLAARGEVTVEETTIHNRQAFVTPMFLSVRKNGRGRGRISR 260

Query: 267 TQFSIWFKAKATKAGVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
              +       +KAG+ +   S H +R    T+  D       +  T   + +  +  Y 
Sbjct: 261 IGLNSVIDGYLSKAGLKRKRVSCHALRHTCGTMLYDVTKDIRAVQDTLRHEDISTSAIYA 320

Query: 324 KG 325
             
Sbjct: 321 AS 322


>gi|257422176|ref|ZP_05599166.1| recombinase [Enterococcus faecalis X98]
 gi|312951221|ref|ZP_07770123.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0102]
 gi|257164000|gb|EEU93960.1| recombinase [Enterococcus faecalis X98]
 gi|310630755|gb|EFQ14038.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0102]
 gi|315031051|gb|EFT42983.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0017]
          Length = 382

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 53/350 (15%), Positives = 118/350 (33%), Gaps = 43/350 (12%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSA----LTGSTPKREYINSP 64
            +V     + G   + +R  +   ++           +  +A    L           S 
Sbjct: 11  KYVFSYSNKKG-TFWGYRYPYYNSLKHRKEASKRGFESERAANKALLKIQYALETQNTSF 69

Query: 65  RKKPT-TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIR-- 120
            +    T+   I  +   A   + +V+++ + ES     I    G+     +     +  
Sbjct: 70  IENKQLTIDEWIDVWIPYAQ-DNWSVSTKQNIESAIKFHISPLIGNQKLSSLNKITYKRE 128

Query: 121 ---SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
                 +  K+T S+   +   +  +   AV  + +  N     +     +  +R ++K+
Sbjct: 129 FIDKLRQKNKYTESTIQTWHKIVMRMINAAVHNQIIPSNTLTGFKF--DLSNNVRSFSKK 186

Query: 178 DMQQFKSFWS-EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ------------NNIFSI 224
           ++Q+F +    E  Q ++ F  LL SG+R  +        +              +    
Sbjct: 187 ELQRFVAVLENEDIQTQVIFLTLLKSGMRKGELMGLRWNDIDLNEKYFDINSTRGDYGEN 246

Query: 225 KTQKTGTIITVELPDGFMKLLAMTP--------------IGKETFFINNDKQKMNATQFS 270
           K +   +I  V   +  + L+                    K+ F +++    +  ++ +
Sbjct: 247 KPKTKTSIRKVYFDNSLLTLIKKYKNHEKERLLREGIILREKDYFILSSRNLPIKQSRIT 306

Query: 271 IWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
             F+    KA V N + HG+R   AT   +AGA    +    G K ++  
Sbjct: 307 YIFRLLCEKAEVQNITVHGLRHTHATFLIEAGANIKYVSTRLGHKNINIT 356


>gi|189468320|ref|ZP_03017105.1| hypothetical protein BACINT_04717 [Bacteroides intestinalis DSM
           17393]
 gi|189436584|gb|EDV05569.1| hypothetical protein BACINT_04717 [Bacteroides intestinalis DSM
           17393]
          Length = 400

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 37/270 (13%), Positives = 90/270 (33%), Gaps = 26/270 (9%)

Query: 89  VNSRISFESYF----DQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF---LTSMR 141
             +  ++E+        + +   DF +  ++++ +    ++              L +M+
Sbjct: 126 EGTAKAYEATLHSMQKHLCKT--DFPFAHLSSRLVIKYRDTLLEAGVGKNTIGFYLHNMK 183

Query: 142 VLFK-WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-WSEGSQ---PRLAF 196
            +++   +    V  +P  ++ R + +    +    + ++   +   S G+     R  F
Sbjct: 184 AVYRRGCLELNLVFPSPFCNI-RIRSEKTVKQSLPMKQVKSLANLSLSVGTPECLARDVF 242

Query: 197 EFLLYS-GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM-TPIGKET 254
            F +Y+ G+   D        +   +   + QKTG ++ + +      LL        + 
Sbjct: 243 MFSIYTRGMSFVDIAFLKKSDIFPGVIRYRRQKTGQLLEIGINRQIQNLLERYGDTSGDY 302

Query: 255 FFINNDKQKMNATQFSIWFKAKATKAG---------VNKSAHGVRKFSATISADAGATAH 305
            F   D+ +   + +   +                 +    H  R   A ++ + GA  H
Sbjct: 303 LFPLVDESETPYSGYKKAYNRMRYALKKVSWNIGMSIPLRLHAARHCWAMMARENGAPLH 362

Query: 306 ELMATYGWKTVDQAETYTKGADRIRLGIKN 335
            +    G  +      Y K  DR  L   N
Sbjct: 363 TISECLGHSSEKVTRIYLKELDRSVLDEVN 392


>gi|160887306|ref|ZP_02068309.1| hypothetical protein BACOVA_05324 [Bacteroides ovatus ATCC 8483]
 gi|156107717|gb|EDO09462.1| hypothetical protein BACOVA_05324 [Bacteroides ovatus ATCC 8483]
          Length = 308

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/275 (12%), Positives = 84/275 (30%), Gaps = 43/275 (15%)

Query: 87  LAVNSRISFESYFD-QIIRKSGDF-DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLF 144
           +  ++  ++    +  I    G+  +  +   +       +   +  S    L  ++++ 
Sbjct: 22  VKQSTFAAYVLILENHIYPTFGEMYELEENKVQEFALQKINNGLSKKSIKDILIVLKMIL 81

Query: 145 KWAVRQEYVA------INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG-SQPRLAFE 197
           K+ V+  Y+         P         + + +   +    ++  SF  E  +   L   
Sbjct: 82  KFGVKHGYLDYKEWEIRFPTED------EKQHLEVLSISHQKRIMSFIQEHFTFKNLGIY 135

Query: 198 FLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQ---------------------KTGTIIT 234
             L +GLR  + C      +     I SIK                       KT   I 
Sbjct: 136 ICLSTGLRIGEVCALTWDDINIELGIISIKRTIERIYIIDGEKRHTELIINTPKTKNSIR 195

Query: 235 -VELPDGFMKLLAMTP--IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVR 290
            + +    +++L      +    + + N+++      +  ++K       +     HG+R
Sbjct: 196 EIPITKELIRILKPLKKIVNGNYYILTNEEKPTEPRTYRNYYKKLMKDLNIPELKFHGLR 255

Query: 291 KFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
              AT   ++      +    G   +    + Y  
Sbjct: 256 HSFATRCIESNCDYKTVSVILGHSNISTTLDLYVH 290


>gi|14600982|ref|NP_147508.1| tyrosine recombinase XerC/XerD [Aeropyrum pernix K1]
 gi|5104468|dbj|BAA79783.1| tyrosine recombinase XerC/XerD [Aeropyrum pernix K1]
          Length = 362

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 43/290 (14%), Positives = 88/290 (30%), Gaps = 29/290 (10%)

Query: 50  ALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF 109
           A  GS           ++  +L+     +         +  +   + +     ++  G  
Sbjct: 2   ARAGSIESLPPPPRDIRE-YSLEDAARLFLTILESTGWSSKTIKVYRAALKDFLKSYGRV 60

Query: 110 DYRKITTKHIRSGVESRKHT-------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162
                +       + S            ++A  +   +R   KWA  +  +   P    E
Sbjct: 61  RVGDASHMTYVQWMSSVSERVRKGVISRTTAHYYSIMVRRFLKWAGVEGVMR--PFSRGE 118

Query: 163 RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222
           R    +      +  D++   S  S      L    L  +GLR S+     +  +     
Sbjct: 119 RRFSGS-----LSWRDVEALLS-ASRDIIDALIVSMLAETGLRVSELLSLRLSDVDLGRG 172

Query: 223 SIKT-QKTGTIITVELPDG----FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKA 277
            ++   K G    V L         + LA  P+  ++  I     +++        K+ A
Sbjct: 173 VVRVVGKYGKERIVFLGPLSRMLLEEYLASNPLPPDSRII-----ELSYQAVYKRLKSLA 227

Query: 278 TKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            +AG++      H +R   AT +   G +   L    G   +   + Y  
Sbjct: 228 KRAGLDPRKVRPHILRHTFATEALRRGMSLAALQRLLGHSDIKVTQLYLH 277


>gi|189425632|ref|YP_001952809.1| integrase [Geobacter lovleyi SZ]
 gi|189421891|gb|ACD96289.1| integron integrase [Geobacter lovleyi SZ]
          Length = 453

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 41/318 (12%), Positives = 96/318 (30%), Gaps = 57/318 (17%)

Query: 59  EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH 118
           E     +        ++            +  +  ++ ++  +      +   +++T   
Sbjct: 125 EAGYQEKSDSQEWDAVLKTMADEIKVRHYSRKTLKTYANWSRKFQYFLKNRSPQELTGDD 184

Query: 119 IRSGVESRKHTPSSA----IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
           +++ +     T   A     Q   S+  L++  +++E+  +     V R K+        
Sbjct: 185 VKAYLTHLAVTCKVASTTQNQAFNSLLFLYRHGLKREFGEL---RDVPRAKKSLYIPTVL 241

Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTII 233
           ++E++    +  +      L  + L   GLR  +  +  V+    +   +    K     
Sbjct: 242 SREEIDAILAHLAYPFD--LVVKLLFGCGLRQFECLQLRVRDFNFDAGKLTIHGKGKKDR 299

Query: 234 TVELPDGFMKLLAM------------TPIGKETFFINND---KQKMNATQFSI-WF---- 273
           TV +P+  +  L                +G +  F+++    K      +F   WF    
Sbjct: 300 TVPIPEAILPELKRQIKLVGELHERDLAVGYDGVFLDDSVEKKYPKAPKEFLHQWFFPQK 359

Query: 274 -----------KAK--------------ATKAGVNK--SAHGVRKFSATISADAGATAHE 306
                      +                  KA + K  ++H  R   AT    AG     
Sbjct: 360 NLTLAAETGQQRRWHLHESELQEALYPAVRKAKIPKRVTSHTFRHSFATHLLQAGYDIRV 419

Query: 307 LMATYGWKTVDQAETYTK 324
           +    G  ++     YT 
Sbjct: 420 IQTLLGHSSLKTTMIYTH 437


>gi|257486164|ref|ZP_05640205.1| phage integrase, putative [Pseudomonas syringae pv. tabaci ATCC
           11528]
 gi|331010494|gb|EGH90550.1| phage integrase, putative [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 370

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 52/349 (14%), Positives = 101/349 (28%), Gaps = 41/349 (11%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
           LP  +  +  R G   Y  R   G+  +           A    L               
Sbjct: 13  LPQNLYMD-DRRGTYRYR-RPTDGKWFQFGTDRIKAVDAAKQLNLAFMQGADLVETVLGV 70

Query: 67  KPTTLKWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
              +    +  Y  +      LA  +   +  +F +  R        +I+ + +   ++ 
Sbjct: 71  TSESFAGFLDHYEATVLPPRELAKGTLQLYAVHFRRFRRAFEGKAVDQISIRMVAVMLDE 130

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS-VERPKRKTEGIRPWTKEDMQQFKS 184
              TP +A Q    +  +F  A  +     NP  S +   ++K       T E ++  + 
Sbjct: 131 L--TPRTANQCRALLIDIFNHAAAKGLCPDNPAASTINLIEKKQRKRH--TVEGLKLIRE 186

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-----ITVELPD 239
                   R + +  L +  R +D      + ++     +  QKT        I   +  
Sbjct: 187 KSPAWL--RNSIDLALITAQRRTDILDMKFEDVREGYLYVIQQKTAKASDAAWIRFRVTP 244

Query: 240 GFMKLL-AMTPIGKETFFINND-----------KQKMNA---TQFSIWFKAKATKAG--V 282
               ++          + ++             K           +  FKA    AG   
Sbjct: 245 ELQAVISRCRDNVASPYLVHRRPERLKQKQAQTKDHWTKIEERYLTRAFKAAREDAGCYT 304

Query: 283 NKS------AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           ++S       H VR  S  +   AG    ++    G  + D  + Y K 
Sbjct: 305 DRSDEEMPGFHEVRALSLHLYKKAGKDGQKIA---GHASEDMTKNYQKD 350


>gi|227555815|ref|ZP_03985862.1| bacteriophage integrase [Enterococcus faecalis HH22]
 gi|227174982|gb|EEI55954.1| bacteriophage integrase [Enterococcus faecalis HH22]
 gi|315573614|gb|EFU85805.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0309B]
 gi|315582038|gb|EFU94229.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0309A]
          Length = 392

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 54/347 (15%), Positives = 108/347 (31%), Gaps = 36/347 (10%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGH----GRRIRL-PYPHESTFIPAYMSALTGSTPKREYI 61
           +P      + +     YY         G+RIR       +     Y  A           
Sbjct: 1   MPKISNIYQDKKSGKWYYVANLGFNEEGKRIRKWGRGFSTQKEAKY--AYDEYMNDFSKT 58

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121
              +    T K  + EY    +   +   +  +  S  D+ +     +    I+   I+ 
Sbjct: 59  AIRQNSTMTYKKFLEEYFLPDYKQRVRKRTYDNRLSSMDKHLPYFYRYKLSDISAPIIKK 118

Query: 122 GVESRKHTPSSA--IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
                    SSA         ++    AV+   +  N    V   K++ + +  WT  + 
Sbjct: 119 WQNQLSKNYSSAYIRNIYGLFQLSLDLAVKLGLITNNTAKIVGNVKKQKQKVDFWTLNEF 178

Query: 180 QQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------ 229
           Q+  + +           ++  FL  +GLR  ++       L     +I+ +K+      
Sbjct: 179 QKVIATFDVTDYYELYTYVSIYFLFMTGLRLGEAQALEWADLDFKNETIRIEKSMFYKNA 238

Query: 230 -----------GTIITVELPDGFMKLLAMTP-----IGKETFFINNDKQKMNATQFSIWF 273
                       +I T+ L D  +KLL          G   + ++ +    N        
Sbjct: 239 QEFYCTEPKTRASIRTIALDDDLIKLLKEWKEKQDSNGGSKYVLSYNGLPTNKHTLRHVI 298

Query: 274 KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
           K  +  A V+    H +R   A++    G  A ++    G + ++  
Sbjct: 299 KRHSNLANVHHIKIHALRHSHASLLISLGINALDVRDRLGHEDIETT 345


>gi|199599691|ref|ZP_03213060.1| integrase [Lactobacillus rhamnosus HN001]
 gi|199589415|gb|EDY97552.1| integrase [Lactobacillus rhamnosus HN001]
          Length = 360

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 50/335 (14%), Positives = 110/335 (32%), Gaps = 36/335 (10%)

Query: 17  RHGKIIYY---FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT--TL 71
           + GK+  Y   ++   G+  ++     S F     + L  S  K  Y++  + +    TL
Sbjct: 6   KRGKVWQYEISYKDLDGKFKKIRK---SGFPRKSDAELAASQVKSVYLDIKQYQAGAITL 62

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE--SRKHT 129
                 +       S+   + I +E+    I +  G    R +T    +  +   ++ H 
Sbjct: 63  SEYFERWIHLYKKNSVTEVTFIKYENTLSHIKQLFGGVLLRDLTRTLYQERLNIFAQNHA 122

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV---ERPKRKTEGIRPWTKEDMQQFKSFW 186
           P +   F   +R     AV +  + ++P        RP   T+  R    ++ +Q     
Sbjct: 123 PRTVAAFHKQIRAALLDAVDERIIHLDPTRKAIISGRPISATK--RALDYQEWRQLIQGL 180

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFS------------IKTQKTGTI 232
              +  ++       +G+R ++        +       S             K  K  + 
Sbjct: 181 DTSNTEQMIIYIAAVTGMRYAEVLGLTKSDIDLTGGEISINKTWDYKYHTGFKKTKNTSS 240

Query: 233 ITVELPD-----GFMKLLAM-TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-S 285
           +   + D        K L +  P   +T    ++     + + +     K    G+ + +
Sbjct: 241 VRAVVLDTASIMKLAKFLKLHAPETPQTPIFVSNGHSPVSAEINKILTKKLKSLGLPRIT 300

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
            HG+R   A+I    G +   +    G   +   +
Sbjct: 301 FHGLRHTHASILLYQGVSVLSVSKRLGHSNITTTQ 335


>gi|167764658|ref|ZP_02436779.1| hypothetical protein BACSTE_03048 [Bacteroides stercoris ATCC
           43183]
 gi|167697327|gb|EDS13906.1| hypothetical protein BACSTE_03048 [Bacteroides stercoris ATCC
           43183]
          Length = 444

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 45/280 (16%), Positives = 89/280 (31%), Gaps = 48/280 (17%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYR-KIT------TKHIRSGVESRKH-----TPSS 132
             L+  +  +++S  + + + +   +   KI            + +   KH       +S
Sbjct: 156 TKLSPATLATYKSTRNILKKYAAARNITIKIEAVNLEFRNDFINFLYDIKHHNGEYKLNS 215

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP-WTKEDMQQFKSFWSEGSQ 191
             +F+ +++V  + A        N     +    K E      T+ ++    +     +Q
Sbjct: 216 IGKFIKTIKVFMRHAFDNNVTTNNSVFKKDFVPLKEEANTIYLTENELAALYALELPTNQ 275

Query: 192 P--RLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTGTIITVELPDGFMKLLAM 247
              R  F    Y+GLR SD  R  ++H+    N  +I T KT   + + +     ++L  
Sbjct: 276 AEVRDCFLISCYTGLRYSDISRLSMEHINLEKNTITIVTYKTRNQVVIPIHRIVKEILER 335

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----------------------NK 284
                     N   +       +   K    +AG+                         
Sbjct: 336 YG--------NKLPKPQCNQSTNRMLKKLCEQAGITEIISYTETVGGTHKECTARKCDKV 387

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           + H  R+  AT +         +MA  G KT      Y +
Sbjct: 388 TTHTARRSFATNAYKRNVPTLAIMAITGHKTETSFMKYIR 427


>gi|312873817|ref|ZP_07733861.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LEAF 2052A-d]
 gi|311090698|gb|EFQ49098.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LEAF 2052A-d]
          Length = 372

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 59/348 (16%), Positives = 118/348 (33%), Gaps = 40/348 (11%)

Query: 13  KERTRHGKIIYYFRKG-----HGRRIRLPYPHESTFIPAYMSA--LTGSTPKREYINSPR 65
           +   ++G+  YYF+       +G+RI         F   Y  A  +     + +  +  +
Sbjct: 11  EYTLKNGQKRYYFKISLGENSNGKRI---VTTRRGF-KTYADADQVYNQLTRVKADDFVK 66

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
           +   T+  L   + ++        ++R+    Y + I    G+    KIT   ++   + 
Sbjct: 67  QNQITIDELHKIWFENYKNAVKESSARMEKNVYTNHIKPCFGNQFIDKITVVALQKWADK 126

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-----PWTKEDMQ 180
           +     +  + +  M  LF++ +R  YV+ N    V  PK+ T   R      +T+E+++
Sbjct: 127 KATELVAFRRVIAIMNALFEYGMRLNYVSSNLVKRVLIPKKTTRKRRDIEKNVYTREELE 186

Query: 181 QFKSFWSEGS-QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT---------- 229
            F       S      F+ L  +GLR S+      Q +      +   KT          
Sbjct: 187 LFLKIAKTRSIMQYTFFKILACTGLRRSECLALTWQDIDFENNLLSVSKTLSSGFNSQLI 246

Query: 230 -------GTIITVELPDGFMKLL--AMTPIGKETFFINNDKQKMNATQFSIWFKA--KAT 278
                   +   + +      LL         E  F   +   ++ +  + W      A 
Sbjct: 247 LQTPKSRTSNRKIPISSALRDLLIEYQKQSTSEKLFHTVNDTFLHLSAPNTWLNEIYHAH 306

Query: 279 KAGVNKSAHGVRKFSATIS-ADAGATAHELMATYGWKTVDQA-ETYTK 324
                 + HG R   AT+  ++       +    G K ++     YT 
Sbjct: 307 PELREITVHGFRHTFATLLISETNVKPKTVQMLLGHKNIEITLNLYTH 354


>gi|307273987|ref|ZP_07555197.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX0855]
 gi|306509295|gb|EFM78355.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX0855]
          Length = 387

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 48/319 (15%), Positives = 93/319 (29%), Gaps = 48/319 (15%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDF 109
           L     + E          T   L   +    H  ++   +    +++F +QI+   G  
Sbjct: 49  LARFQIEIESTGISHHSIKTFSELYDLWMN-QHVKNIRNTTEQRIKNHFTNQILPSFGKM 107

Query: 110 DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
               IT    +  +        S  +  +    +F + +    +  NP      PK    
Sbjct: 108 RLEVITPAICQKILTEWSTKYHSYQKIKSYTSQVFNYGILIGVIKTNPMERTITPKSNHS 167

Query: 170 ----GIRPWTKEDMQQFKSFWSEGSQPRLA--FEFLLYSGLRCSDSCRAGVQHLQ----- 218
                   +TKE+++QF     E    R    F    Y+G R  +      + +      
Sbjct: 168 FNEIEEEFYTKEELRQFFDCLQELKDDRALTFFRLAAYTGARKGEILGLTWKDIDFDKKT 227

Query: 219 -----------NNIFSIKTQKT-GTIITVELPDG----------------FMKLLAMTPI 250
                      +    +   KT  +  T+ + DG                  + + +  I
Sbjct: 228 VQFNKTLVELSDGSLCVNPTKTESSKRTITIDDGTLTILKKWKRTVIKKNLSRGIRIDNI 287

Query: 251 GKETFFIN---NDKQKMNATQFSIWFKAKATKAGVNKSA---HGVRKFSATISADAGATA 304
                      N K+      +     +K  +   +      HG RK  AT+  +AGA  
Sbjct: 288 DDVPVISTIKANKKRDFLYNGYPNHVMSKVARKFPDMKIIKVHGFRKTHATLLFEAGAQV 347

Query: 305 HELMATYGWKTVDQA-ETY 322
            ++    G  +     + Y
Sbjct: 348 KDVQDRLGHSSSKTTMDIY 366


>gi|304382840|ref|ZP_07365323.1| integrase [Prevotella marshii DSM 16973]
 gi|304336025|gb|EFM02272.1| integrase [Prevotella marshii DSM 16973]
          Length = 409

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 43/251 (17%), Positives = 91/251 (36%), Gaps = 26/251 (10%)

Query: 95  FESYFDQIIRK---SGDFDYRKITTKHI----RSGVESRKHTPSSAIQFLTSMRVLFKWA 147
              +    I++   +GD  + ++T   +    +  V    H+ S   +   +++ + + A
Sbjct: 140 LRKHLQVFIQERYHTGDITFGQLTEDFLDGLHQYSVGKHGHSQSYYRKMALAVKKVCRLA 199

Query: 148 VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG-----SQPRLAFEFLLYS 202
            R+  +       V+  + +++  R   +  + + +    E      +  R  F F  Y+
Sbjct: 200 FREGIIERPLFDLVKIDRGESKLPRALDRASLDRIRQVRLEEDETELTLARNLFLFTCYT 259

Query: 203 GLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVELPDGFMKLLAMTPIG-KETFF 256
           G    D      +HL  +         + QKT T+  V+L    + LL       ++T  
Sbjct: 260 GTAFCDMKNLHKEHLVQDDAGAMWLKFRRQKTNTLCRVKLLPQAVALLDTFHSDERDTLL 319

Query: 257 INNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS-ADAGATAHELMATYGW 313
                  ++   +S   KA   +AG+    +AH  R   AT+   + G     +    G 
Sbjct: 320 PT-----ISYETYSFLLKALQLRAGIAIPLTAHIGRHTFATLITLENGVPIETVSKMLGH 374

Query: 314 KTVDQAETYTK 324
             ++  E Y  
Sbjct: 375 SKIETTERYAH 385


>gi|256843484|ref|ZP_05548972.1| integrase [Lactobacillus crispatus 125-2-CHN]
 gi|256614904|gb|EEU20105.1| integrase [Lactobacillus crispatus 125-2-CHN]
          Length = 361

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 37/288 (12%), Positives = 89/288 (30%), Gaps = 27/288 (9%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-KH 128
           T      EY  +      A  ++  +      +    G+    K+  +  +S + +  K+
Sbjct: 60  TFAQAYEEYTNTYKIPGKATTTQRRYNYSITIVKNYFGNVKLTKMNRQRYQSFLNNYGKN 119

Query: 129 TPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGIRP--WTKEDMQQFKSF 185
              + ++ L      F    +  + +  N    V      +   +      +++Q+    
Sbjct: 120 HAKTTVRLLNRYIKAFVHDCLSDKLITNNFTDRVNLTWNDSHSHKVQYLNYKEVQKLLKS 179

Query: 186 WSEGSQP----RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------------ 229
                +P    R      +Y+G+R  +        +      I+  K+            
Sbjct: 180 LEFNIEPTYISRYMIITAIYTGMRIGEIMALKWSDIDFKKHLIRVTKSYSYVDGKIKEPK 239

Query: 230 --GTIITVELPDGFMKLLAMTPIGKETF-FINNDKQKMNATQFSIWFKAKATKAGVNK-- 284
              +   + + +  + LL       + F F+    + + AT  +   K +  K  ++K  
Sbjct: 240 TESSKRVIRVSENLLDLLKQLKANHQKFVFMTQHGKIITATAANQTLKKQLKKLKISKNH 299

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQ-AETYTKGADRIR 330
              H +R     +    G   + +    G  ++   A  Y    D +R
Sbjct: 300 FHFHSLRHTHVALLLFKGVPLYAISKRLGHSSMSMTASVYAYMLDELR 347


>gi|116619765|ref|YP_821921.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116222927|gb|ABJ81636.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 332

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 42/304 (13%), Positives = 94/304 (30%), Gaps = 37/304 (12%)

Query: 44  IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII 103
            PA ++AL  S      +   +  P T+      +R    +  +             +  
Sbjct: 3   DPANLAALLQSFFTTRLMAQRKASPHTIASYRDTFRLLLQFAQMR----------LRKAP 52

Query: 104 RKSGDFDYRKITTKHIRSGVESRKH-TPSSAIQFLTSMRVLFKWAVRQ-----EYVAINP 157
            + G  D            + +R+H    S    LT++R  F++A  +       +    
Sbjct: 53  SQLGLEDLDASLVGAFLEDLGNRRHNGARSRNLRLTAIRSFFRYASLEAPAHSGIIQR-- 110

Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAG 213
            L++   +++   +   T+ ++    +  +     G +        + +GLR S+     
Sbjct: 111 VLAIPNQRQRRTLVGFLTRPEIDALLAAPNRTQWLGRRDHAFLLTAVQTGLRLSEMTGLR 170

Query: 214 VQHLQNNIF-SIKTQKTG-----TIITVELPDGFMKLLAMTPIGKE-TFFINNDKQKMNA 266
            + +       ++ +  G     T +           +     G   T F +     ++A
Sbjct: 171 HEDVSLGAGAHVRCRGKGRKERCTPLAKPTAAVLKAWIREQGRGDSKTLFPSTRGGPLSA 230

Query: 267 TQFSIWFKAKATKAGVNK--------SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
                       KA  +         S H +R  +A     AG     +    G ++V+ 
Sbjct: 231 DGVQHLLARHVAKARKHCASLRKKRVSPHVLRHAAAMELLQAGVDRAVIALWLGHESVET 290

Query: 319 AETY 322
            + Y
Sbjct: 291 TQIY 294


>gi|301062646|ref|ZP_07203274.1| site-specific recombinase, phage integrase family [delta
           proteobacterium NaphS2]
 gi|300443257|gb|EFK07394.1| site-specific recombinase, phage integrase family [delta
           proteobacterium NaphS2]
          Length = 359

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 42/260 (16%), Positives = 85/260 (32%), Gaps = 20/260 (7%)

Query: 93  ISFESYFDQIIRKSG----DFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAV 148
            S+    + +                     +    S+  + ++  + L      F  AV
Sbjct: 86  RSYYGRMEYMFSNFEFFTKKNAISAADISKYQKLRASQGVSGTTINRELNYCDAAFNRAV 145

Query: 149 RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLAFEFLLYSGL 204
            +  +A+NP    ++   + E  R  T++++ +F    +    +    +      + +GL
Sbjct: 146 SRNMIAVNPFTGFDKF-EELERTRFLTEDELVRFLRAAAYYEIQAPHLKAVVLTAILTGL 204

Query: 205 RCSDSCRAGVQHLQNNIFSI-----KTQKTGTIITVELPDGFMKLL--AMTPIGKETFFI 257
           R           +  N+  I     +  +      + +PD  + +L   +        F 
Sbjct: 205 RKRAILTLHKGEINFNLGLIIKFPGQASRNKRAGVIPIPDDLVDILKSRIEQSKSGYLFE 264

Query: 258 N-NDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKT 315
           N N  Q M        FK    KAG+ +   H +R   AT +         +    G K 
Sbjct: 265 NPNTGQPM--RDVKKSFKKALKKAGIEDFRFHDLRHTFATYAMVKSKDIRGVQEILGHKN 322

Query: 316 VDQAETYTKGADRIRLGIKN 335
           +   + YT    R ++ I N
Sbjct: 323 IQTTQKYTHVLAREKVNIVN 342


>gi|290959113|ref|YP_003490295.1| prophage integrase [Streptomyces scabiei 87.22]
 gi|260648639|emb|CBG71751.1| putative prophage integrase [Streptomyces scabiei 87.22]
          Length = 380

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 49/333 (14%), Positives = 94/333 (28%), Gaps = 31/333 (9%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEY 78
           G+    +    G          ++       A      +      P +  TT++   + +
Sbjct: 20  GRFQARYPGPDGVLRPADRTFATSTDADRWLAKKRIEIEDGRWLDPAEGQTTVRDWAARW 79

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFL 137
             +     L   ++ S+ S  + +I    GD +   +    +   V S      SA +  
Sbjct: 80  LAAVS-PQLKHKTQASYRSLINSLINPTLGDRELSGLRPITVTEWVASMNTRGLSASRIR 138

Query: 138 TSMRVL---FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
            + RVL    + AV  + +   PC  V+ P+         T   ++  +   S      +
Sbjct: 139 QAYRVLSQIMRAAVDNDMIPQTPCRGVKLPRMPQTEPHILTP--LEASRIVRSAAKPHDV 196

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQ---------------NNIFSIKTQKTGTIITVELPD 239
               L Y+GLR  ++       +                N      T K+     + +  
Sbjct: 197 LIALLAYAGLRVGEAFALRRVDIDVSGGFVLVDENLAEANGALVFDTPKSHQKRLLRVGP 256

Query: 240 GFMK----LLAMTPIGKETFFINNDKQKMNA--TQFSIWFKAKATKAGV-NKSAHGVRKF 292
              K     L     G +         K          +F    + AG+ + + H +R  
Sbjct: 257 ALAKRLGRHLETLSGGDDALLFTTPGGKPLRYNQWRKAYFDPAVSAAGLTDVTPHDLRAS 316

Query: 293 SATISADAGATAHELMATYGWKTVD-QAETYTK 324
             T  AD            G          Y +
Sbjct: 317 HGTWVADRYG-VMTAAHRLGHSNASVTTRHYAR 348


>gi|298346458|ref|YP_003719145.1| putative integrase/recombinase XerD [Mobiluncus curtisii ATCC
           43063]
 gi|298236519|gb|ADI67651.1| possible integrase/recombinase XerD [Mobiluncus curtisii ATCC
           43063]
          Length = 323

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/281 (13%), Positives = 84/281 (29%), Gaps = 41/281 (14%)

Query: 85  GSLAVNSRISFESYFDQIIR-----KSGDFDYRK------ITTKHIRSGVESRKH---TP 130
             L+  +  ++ +   +++       SGD    +           IR+ + +      + 
Sbjct: 26  RGLSPQTVRAYLTDLRELMTFLVDSDSGDGPAAQQLRADLANPARIRAWLGAMSRAGMSR 85

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           ++  + + S R    WA  +  V  +   ++   +         +  D           +
Sbjct: 86  ATLARRVASFRTFASWAQVRGIVPGDAGQNLRASRPDNALPTVLSATDAAHLLETARAAA 145

Query: 191 QPRL-------------AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-- 235
            P               A E L  +G+R S+     + ++  +  +++    G    V  
Sbjct: 146 YPEASTAPNPVKLRDWAALELLYATGIRVSELTGLELGNINKSQRTVRVTGKGDKQRVVP 205

Query: 236 -----------ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-N 283
                       L  G   L+          F+      ++             +A V +
Sbjct: 206 YGIPAGLALEEYLEKGRPALVNPEKPALNRVFLGAKGGMLDTRIVRGMLHRLTAQAEVPD 265

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              HG+R  +AT   D GA    +    G  ++   + YT 
Sbjct: 266 LGPHGLRHTAATHLLDGGADLRSVQEILGHASLATTQRYTH 306


>gi|227546691|ref|ZP_03976740.1| phage family integrase [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|227213008|gb|EEI80887.1| phage family integrase [Bifidobacterium longum subsp. infantis ATCC
           55813]
          Length = 318

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/298 (13%), Positives = 95/298 (31%), Gaps = 31/298 (10%)

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK 113
           S  +   + +   +  +     S++      G++   +   ++     + +   D    +
Sbjct: 4   SAKEPRVVINTINEEMSFCDYYSQWVDVYKEGAIREVTMKKYKLTQAWLRKLIPDLKLSE 63

Query: 114 ITTKHIRSGVESRKHTPS--SAIQFLTSMRVLFKWAVRQEYVAINPCLS--VERPKRKTE 169
                 +  +          + + F   ++     AV +  +  +P     ++  + + +
Sbjct: 64  FDRVSYQKLINGYAEHHEHQTTMDFHHQLKGAILDAVDEGLIQRDPTRKAIIKGKQPRQK 123

Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSIKTQ 227
             +   + ++    +       P   +  LL   +GLR S++             ++   
Sbjct: 124 KTKYLNQFELHAVLADLKLDPIPNWDWLILLVAKTGLRFSEALGLTPDDFDFVHQTLSVN 183

Query: 228 KT-------------------GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ 268
           KT                      +  +L      LL   P  K  F    + +  N+T 
Sbjct: 184 KTWNYKNGGGFVPTKNASSVRKVQLDWQLIMQLSVLLKNLPDDKPIFV---NGKVYNSTA 240

Query: 269 FSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
             I  +    +AGV   S HG+R   A++   AG +   +    G  +++   ETY  
Sbjct: 241 NGILARH-CKQAGVPVISIHGLRHTHASLLLFAGVSIASVSKRLGHASMNTTQETYLH 297


>gi|120404706|ref|YP_954535.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
 gi|119957524|gb|ABM14529.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
          Length = 471

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 49/294 (16%), Positives = 86/294 (29%), Gaps = 43/294 (14%)

Query: 75  ISEYRKSAHWGSLAVNSRISFE----SYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
           +  Y +S   G+   + R           D+++         +     +R     +   P
Sbjct: 166 VLAYLRSRSGGAQYADVRDELGNPGVKALDRLVASGEVIRPSRGRYVAVRDSDPVQSKIP 225

Query: 131 -----SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
                 + +  L  +      A+R+  VA N    V+RP  +   +  WT E   +F+  
Sbjct: 226 GNVSSRTVVTMLVVLSSALDDAMREGLVARNVARLVKRPAVEHHEMATWTAEQAVRFRE- 284

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-----------------TQK 228
              G +    +   L  GLR S+        +  +  ++                   + 
Sbjct: 285 HVRGDRLAACWLLTLA-GLRRSEVLGLRWSDVDLDGGTVTIAQGRVVAEGQGTITGDPKS 343

Query: 229 TGTIITVELPDGFMKLLA---------MTPIGKET-----FFINNDKQKMNATQFSIWFK 274
             +   + +P   +  L             IG E        +N     +    +S  F 
Sbjct: 344 KRSRRALPMPAEVLAALRVFRLRQSEERLAIGSEYPDTGLVAVNVIGLPIRPETYSGEFM 403

Query: 275 AKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
             A  AGV     H VR  +AT+  D G T        G         Y    D
Sbjct: 404 RHAKDAGVPLIRLHDVRHTAATMLLDRGTTPSATAKWLGHDPAITLRVYGHVYD 457


>gi|145223373|ref|YP_001134051.1| phage integrase family protein [Mycobacterium gilvum PYR-GCK]
 gi|145215859|gb|ABP45263.1| phage integrase family protein [Mycobacterium gilvum PYR-GCK]
          Length = 471

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 46/294 (15%), Positives = 83/294 (28%), Gaps = 43/294 (14%)

Query: 75  ISEYRKSAHWGSLAVNSRISFE----SYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
           +  Y +S   G+   + R           D+++         +     +R     +   P
Sbjct: 166 VLAYLRSRSGGAQYADVRDELGNPGVKALDRLVASGEVIRPSRGRYVAVRDSDPVQSKIP 225

Query: 131 -----SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
                 + +  L  +      A+R+  VA N    V+RP  +   +  WT E   +F+  
Sbjct: 226 GNVSSRTVVTMLVVLSSALDDAMREGLVARNVARLVKRPAVEHHEMATWTAEQAVRFRE- 284

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-----------------TQK 228
              G +    +   L  GLR S+        +  +  ++                   + 
Sbjct: 285 HVRGDRLAACWLLTLA-GLRRSEVLGLRWSDVDLDGGTVTIAQGRVVAEGQGTITGDPKS 343

Query: 229 TGTIITVELPDGFMKLLAMTP--------------IGKETFFINNDKQKMNATQFSIWFK 274
             +   + +P   +  L                         +N     +    +S  F 
Sbjct: 344 KRSRRALPMPAEVLAALRAFRLRQSEERLAIGSEYPDTGLVAVNVIGLPIRPETYSGEFM 403

Query: 275 AKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
             A  AGV     H VR  +AT+  D G T        G         Y    D
Sbjct: 404 RHAKDAGVPLIRLHDVRHTAATMLLDRGTTPSATAKWLGHDPAITLRVYGHVYD 457


>gi|301794240|emb|CBW36660.1| Integrase [Streptococcus pneumoniae INV104]
          Length = 387

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 50/305 (16%), Positives = 94/305 (30%), Gaps = 45/305 (14%)

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKH 118
           Y    +   TT   L+  +  S    ++  N+R S +      ++   GD+   K+TT  
Sbjct: 59  YTVKDKPTITTYNELVKVWWDSYK-NTVKPNTRQSMDGLVRVHLLPVFGDYKLSKLTTPI 117

Query: 119 IRSGVESRKHTPSS------AIQFL--TSMRVLFKWAVRQEYVAINPCLSVERPKRKTE- 169
           ++  V       +       A   L     + + K+ V  + +  NP   V  P+++ + 
Sbjct: 118 LQQQVNKWADKANKGEKGAFANYSLLHNMNKRILKYGVAIQVIQYNPANDVIVPRKQQKE 177

Query: 170 --GIRPWTKEDMQQFKSFWS-------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220
              ++    ++++QF  +         E     + ++ LL +G R S++       +   
Sbjct: 178 KAAVKYLDNKELKQFLDYLDTLNQSNYENLFDVVLYKTLLATGCRISEALALEWSDIDLE 237

Query: 221 IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK----------------- 263
              I   KT                   PI K T  +    +                  
Sbjct: 238 SGVISINKTLNRYQEINSPKSSAGYRDIPIDKATLLLLKQYKNRQQIQSWKLGRSETVVF 297

Query: 264 --MNATQ-----FSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKT 315
                                  AGV N S HG R    T+   A A+  ++    G   
Sbjct: 298 SVFTEKYAYACNLRKRLNKHFDAAGVTNVSFHGFRHTHTTMMLYAQASPKDVQYRLGHSN 357

Query: 316 VDQAE 320
           +   E
Sbjct: 358 LMITE 362


>gi|285018356|ref|YP_003376067.1| phage-related integrase [Xanthomonas albilineans GPE PC73]
 gi|283473574|emb|CBA16077.1| putative phage-related integrase protein [Xanthomonas albilineans]
          Length = 407

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 43/304 (14%), Positives = 104/304 (34%), Gaps = 28/304 (9%)

Query: 52  TGSTPKREYINSPRKKPT--TLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGD 108
            G +P +E      +     T      ++ +      +A ++R    S +++ +  K G+
Sbjct: 78  AGKSPAKEKARDKARVKGAETFGAWAEKWLRGYQ---MADSTRDMRRSVYERELKPKFGN 134

Query: 109 FDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
               +IT + +R+  ++   +  P++A+     +  +++WA+ +     NP   V     
Sbjct: 135 QKLVEITHEDLRALTDAIVERGAPATAVHAREVVLQVYRWAIERGQKVENPAELVRPTSI 194

Query: 167 KT--EGIRPWTKEDMQQFKSFWS-EGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221
                  R  T +++     +    G+ P  R A + LL + +R S+   A    +  + 
Sbjct: 195 AKFEPRDRALTPDEIGLMYQYMERIGTTPSIRAAAKLLLLTMVRKSELTNATWSEINFSE 254

Query: 222 FSIK----TQKTGTIITVELPDGFMKLLAMTPI---GKETFFINNDKQ--KMNATQFSIW 272
                     K      V L    + +         G +    +       M++   +  
Sbjct: 255 ALWTIPKERMKRRNPHLVFLSRQALDIFIALKTFAGGSDYVLPSRYDSDLPMSSATLNQV 314

Query: 273 ----FKAKATKAG--VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
               ++    +    +    H +R+ ++T+  +AG     +      +       Y K  
Sbjct: 315 LTLTYRLAQKEGKPLIKFGPHDLRRTASTLLHEAGYNTDWIEKCLAHEQRGVRAVYNKAE 374

Query: 327 DRIR 330
            R +
Sbjct: 375 YREQ 378


>gi|229157770|ref|ZP_04285845.1| Integrase/recombinase (XerC/CodV family) [Bacillus cereus ATCC
           4342]
 gi|228625727|gb|EEK82479.1| Integrase/recombinase (XerC/CodV family) [Bacillus cereus ATCC
           4342]
          Length = 323

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 45/291 (15%), Positives = 92/291 (31%), Gaps = 44/291 (15%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFD----QIIRKSGDFDYRKITTKHIRSG----VESR 126
           +  +        L+  +  S++         + R+    D  K+   HIR+      E  
Sbjct: 8   VENFLLHCDAKHLSRKTIRSYDQTLKLFASYLERELKITDVDKVKPLHIRTYIKYLRERG 67

Query: 127 KHTPSS------------------------AIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162
           K+T +S                           +L +++V F +   +E +A NP  ++E
Sbjct: 68  KYTFTSNTASEQINYPTRRTDYGKTISETTIANYLRNIKVFFNFLEAEEDIAKNPISNIE 127

Query: 163 RPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218
             K + +     + +++++           G +  +  + +L +G+R  + C    + L 
Sbjct: 128 SIKPQRKQKILLSVDEIKKVLYSIDISTFHGFRSYVMIKLILDTGIRAGECCSMQAEDLD 187

Query: 219 --NNIFSIKTQKTGTIITVELPDGFMKLLAMT------PIGKETFFINNDKQKMNATQFS 270
             N    I   K      V   +     L             E  F       +N   F 
Sbjct: 188 IKNKSILITNPKNKKQRYVYFSNIMANDLKRWLKYRDRFSDAEYLFPTIRGTMLNVNNFE 247

Query: 271 IWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
              ++   K  V+ + H +R   A      G     L    G  +V+  + 
Sbjct: 248 ASIRSIGKKVRVHFTPHQLRNNFAKYYILNGGDWFSLSRVLGHSSVEVTQR 298


>gi|126653168|ref|ZP_01725292.1| hypothetical protein BB14905_15515 [Bacillus sp. B14905]
 gi|126590084|gb|EAZ84210.1| hypothetical protein BB14905_15515 [Bacillus sp. B14905]
          Length = 238

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 29/218 (13%), Positives = 79/218 (36%), Gaps = 10/218 (4%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--TPSSA 133
            +Y+++      +  +  ++   ++ ++R  GD D  +  T  ++  +         SS 
Sbjct: 8   KKYQQNKKIEGYSSLTLKTYCFQYNLLLRFFGDIDMNEFNTDRLKEYLIRSGDHLKASSL 67

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
              +  ++ LF W+  + Y+  +P   ++ PK      +  ++ +++  +      +  +
Sbjct: 68  GHRVRCVKSLFSWSHEEGYILKHPAAKLKEPKLGKRIPKFLSELEIEHLRDACQT-TMEK 126

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-----ITVELPDGFMKLLAMT 248
             FEF+  +G    +  +   + +     S+  Q  G                 + L   
Sbjct: 127 ALFEFMYSTGCHIGEVVKLNREGIDFQSNSVIVQGKGDKEKEVYFNTSCSIWLKRYLDER 186

Query: 249 PIGKETFFINNDKQK--MNATQFSIWFKAKATKAGVNK 284
              +   FI + + K  M+        K  + +A + +
Sbjct: 187 EDKEPCLFITDRRPKRLMSINNLRYIIKRISNRASIKR 224


>gi|296171015|ref|ZP_06852499.1| integrase [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295894411|gb|EFG74159.1| integrase [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 379

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 54/355 (15%), Positives = 103/355 (29%), Gaps = 36/355 (10%)

Query: 20  KIIYYF---RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76
           +  YY    R+     + L      +++    + +          ++      T     +
Sbjct: 26  RARYYGPDGRRYKAPTLFLTKRDARSWLSLRQAEIVARAWMPPGADAEPAPKLTFTEYAT 85

Query: 77  EYRKSAHWGS--LAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVES-RKHTPSS 132
           ++  +   G   L   +R  +    D  I    G      IT   +R+   +     P+ 
Sbjct: 86  QWLATRQVGGRPLKDRTREHYRKLLDEHIEPTFGLLPIASITADDVRAWYAATLTDKPTM 145

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPC--LSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
                  +R +   A     V  NPC        KR  +  +P T  ++           
Sbjct: 146 RSHAYGLLRTIMATAASDGKVGANPCVIRGAGTAKRVHKV-KPATVSEIGVIADAMPA-- 202

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQ---------------NNIFSIKTQKTGTII-T 234
           Q  L      +  +R  +      + +                ++ F + T K+   +  
Sbjct: 203 QWSLMVLLAAWLAMRFGELTELRRKDIDLTDEVVRVRRAVVRTDDGFVVTTPKSDAGVRD 262

Query: 235 VELPDGFMKLLAM------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAH 287
           V +P   +  +                F       +        F     +A   +   H
Sbjct: 263 VAIPPHLIPAIEAHLSKHVGAKSDALLFPAVGGGHLAPATLYRRFYTARAEADRNDLRWH 322

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD-RIRLGIKNSRRISS 341
            +R   A ++A  GAT  ELMA  G  T   A  Y   A  R R       ++++
Sbjct: 323 DLRHSGAVLAAATGATLAELMARLGHSTPAAAMRYQHAAQGRDREIAALLSKLAA 377


>gi|281424827|ref|ZP_06255740.1| integrase [Prevotella oris F0302]
 gi|299142376|ref|ZP_07035508.1| integrase [Prevotella oris C735]
 gi|281401197|gb|EFB32028.1| integrase [Prevotella oris F0302]
 gi|298576098|gb|EFI47972.1| integrase [Prevotella oris C735]
          Length = 409

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/253 (15%), Positives = 81/253 (32%), Gaps = 22/253 (8%)

Query: 89  VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG----VESRKHTPSSAIQFLTSMRVLF 144
            ++R   + +  +      D  + ++T   I       +    H  S+  +    ++ + 
Sbjct: 138 HSTRKRLQEFIQK-KYHVSDLAFSQLTENFIYELQAFCLSELGHQQSTFFRVAADLKTVC 196

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-----FKSFWSEGSQPRLAFEFL 199
           + A R+          V   +   +  +   +E + +     F     E    R  F F 
Sbjct: 197 RLAYREGLADTLLFDKVHIERGDKKAPKALDQEALDKLKVLRFDELEEEMETARDVFLFA 256

Query: 200 LYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254
            Y+G    D      +HL  +           QKTG +  ++L    ++L+      +  
Sbjct: 257 CYTGAAYCDLMELSKKHLVRDDNGSLWLKFNRQKTGVLCRIKLLPEAVRLIEKMYGDERE 316

Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS-ADAGATAHELMATY 311
             +      +    +    KA   +AG+    + H  R   AT+   + G     +    
Sbjct: 317 ALL----PFIKYPTYQSCLKALRLRAGISFPFTTHTARHTFATLITLEQGVPIETVSKML 372

Query: 312 GWKTVDQAETYTK 324
           G   V   E Y K
Sbjct: 373 GHTNVSMTERYAK 385


>gi|260435817|ref|ZP_05789787.1| site-specific recombinase, phage integrase family [Synechococcus
           sp. WH 8109]
 gi|260413691|gb|EEX06987.1| site-specific recombinase, phage integrase family [Synechococcus
           sp. WH 8109]
          Length = 318

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/281 (14%), Positives = 82/281 (29%), Gaps = 40/281 (14%)

Query: 88  AVNSRISFESYFDQIIR----KSGDFDYRKITTKHIRSGVESRKH-------TPSSAIQF 136
           +  +   ++    +  R           R+I     +  V   +         P +  + 
Sbjct: 42  SSETVRGYKREIREFTRWRDRNHPHLHLREINAAFCQDWVSQLREQVDAGLMKPRTFNRR 101

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI-------RPWTKEDMQQFKSF---- 185
           + ++  L++WA      + +P   V R    T  +       R  ++E +    +     
Sbjct: 102 IAAISSLYRWASE---ASRSPVTGVPRNPVPTRSLLQAPKTTRGISEEAVATLLAVIRQA 158

Query: 186 WSEGSQPRLAFEFL---LYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELP 238
           +S     R  +  +      G R S+      + +          +   K     TV + 
Sbjct: 159 FSTDRNSRRDYALIKGSYLLGCRVSEIAVIRWKDIEALDDGGQIHL-FGKGSKRRTVRVS 217

Query: 239 DGFMKLLAMTPIGKETFFIN---NDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSAT 295
              + L      G    F+      +  +         +     AG +   H +R   AT
Sbjct: 218 AATLDLFQELGRGDAEAFVFPSPRGEGHLTRQAIGDVCRKWGRAAGFHVHPHQLRHSHAT 277

Query: 296 ISADAGATAHELMATYGWKTVDQAETYT----KGADRIRLG 332
            +   G     L AT G  +      Y     + +  +RLG
Sbjct: 278 HAVQRGVDVFTLQATLGHSSSATTGHYVASNPRDSSSLRLG 318


>gi|168758797|ref|ZP_02783804.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC4401]
 gi|168769858|ref|ZP_02794865.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC4486]
 gi|189354442|gb|EDU72861.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC4401]
 gi|189361118|gb|EDU79537.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC4486]
          Length = 412

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 57/367 (15%), Positives = 119/367 (32%), Gaps = 38/367 (10%)

Query: 16  TRH---GKIIYYF--RKGHGRRI---RLPYPHESTFI-----------PAYMSALTGSTP 56
            RH   G + +YF  R G GR+I   RL   +                 A+++       
Sbjct: 35  VRHSTNGLLTWYFTYRAGTGRQISPERLRLGNYPDLSLKAAREKAAQCRAWLAEGKNPRY 94

Query: 57  KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT 116
           +  +       P T+K  ++ + +S        +           II + G     K   
Sbjct: 95  ELNHAVQDALAPVTVKEALTYWLESYA-KEKRTDYESLKSRINKHIISQIGAMPLEKCEL 153

Query: 117 KHIRSGVESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV---ERPKRKTEGIR 172
           +H  +  +   K  P SA   L   +   K+  ++ Y   N    +   +  K+     R
Sbjct: 154 RHWLACFDQLAKRNPVSAGFLLQVCKQALKYCRKRRYAISNVLDDMVVGDVGKKAEISER 213

Query: 173 PWTKEDM-QQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT--- 226
             T +++ +  ++   +   P        L+  G R ++  R+ VQ              
Sbjct: 214 VLTNKELGELLRALDEKIYPPYYSALIRLLIVFGCRTTELRRSEVQEWDFKEMLWTVPKE 273

Query: 227 -QKTGTIITVELPDGFMKLLAMTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGVN 283
             KT   I   +P+  +  +             +   K + + +++      +  +A   
Sbjct: 274 HSKTKVAIFRPIPEAILPFVMKLVEQNRHTGLLLGELKGQSSVSEYGRTAHRRINQA--P 331

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY--TKGADRIRLGIKN-SRRIS 340
            + H +R    T+  D G   H +      +       Y  ++  D  R  +     R+ 
Sbjct: 332 WTLHDIRHTFTTMLNDLGVDPHVVEQLTAHQLPGMQRVYNHSRYLDAKRDALNLWGERLE 391

Query: 341 SVVDSDD 347
            + ++D+
Sbjct: 392 LLQNNDE 398


>gi|154502883|ref|ZP_02039943.1| hypothetical protein RUMGNA_00703 [Ruminococcus gnavus ATCC 29149]
 gi|153796422|gb|EDN78842.1| hypothetical protein RUMGNA_00703 [Ruminococcus gnavus ATCC 29149]
          Length = 401

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 54/385 (14%), Positives = 109/385 (28%), Gaps = 73/385 (18%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKGH--GRRIRLPYPHESTFIPAYMSALTGSTPKREYI 61
             ++P +     T  G   Y  R     G+ + L            + A         + 
Sbjct: 5   KTQIPKY--GTITLKGIQYYRTRITDADGKELSLYAATCEELYEKQLEARKQVEEIIFHR 62

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIR 120
             P       KWL+ +   SA    ++ ++   +     + II+  G+    ++T   IR
Sbjct: 63  QHPTVAEYGEKWLLMQ---SAK---VSASTLRGYTRDMTNYIIKPLGEMYMEEVTADDIR 116

Query: 121 SGVESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV-ERPKRKTEGIRPWTKED 178
             +    K +     +    ++ +F  A R + +  NPC  +  +  + T+     T + 
Sbjct: 117 LALVPLSKKSEGLYNKVNMLLKCIFYTAERNQLLEHNPCAGISGKGGKPTKKKEALTDQQ 176

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQ------- 227
           +         G  P L     LYSGLR  +        +         S++         
Sbjct: 177 VAVLLDTVK-GLPPYLFIMLGLYSGLRREEILALQWDCVFLDEDTPYLSVRRAWRTEHNR 235

Query: 228 -------KTG-TIITVELPDGFMKLLAMTPIG--KETFFINNDKQKMNATQFSIWFK--- 274
                  KT      + +P   ++ L         +    ++  + + A+QF   ++   
Sbjct: 236 PVISTVLKTPAAKRDIPIPKCLVECLREAKENSISDYVIADSKGEPLAASQFQRVWQYVV 295

Query: 275 ----------------------------------AKATKAGVNKSAHGVRKFSATISADA 300
                                                     + + H +R    T    A
Sbjct: 296 VRSTKPRNYYKYVNGESIKYTVTPTLGMTQKNQPKIKYTLDFDVTPHQLRHTYITNLLYA 355

Query: 301 GATAHELMATYGWKTVDQA-ETYTK 324
           G     +    G +      + Y K
Sbjct: 356 GVDPKTVQYLAGHENSKTTMDIYAK 380


>gi|60550189|gb|AAX24191.1| integrase [Xanthomonas campestris pv. begoniae]
 gi|60550194|gb|AAX24195.1| integrase [Xanthomonas campestris pv. begoniae]
          Length = 339

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 42/304 (13%), Positives = 90/304 (29%), Gaps = 58/304 (19%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH----T 129
           L+ + R        ++ +  ++ S+  + I  +G  D  ++    + + +         +
Sbjct: 18  LLDQVRDRLRVRHYSLRTEQAYVSWIRRFILANGKRDPAQMGQAEVEAFLTRLATDGRVS 77

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
             +  Q L ++  L++  +R E        ++ R KR         +E++ +  +     
Sbjct: 78  AGTQNQALAALLFLYREVLRIELP---WMENLVRAKRPRRIPAVLWREEVARLLAVLEGP 134

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAM 247
               L       SG+R  +  R  +  +        ++  K G    V LP    K L  
Sbjct: 135 CW--LMASLPYGSGMRMMECLRLRIMDVDAARGEMLVRDGKGGKDRRVPLPHSLRKALQR 192

Query: 248 ------------TPIGKETFFI---------------------------------NNDKQ 262
                          G    F+                                    + 
Sbjct: 193 KRERALLVHVADLAAGAGRVFLPHALARKYPNADVEPGWQYLFPSARRSRDPRSGRPGRH 252

Query: 263 KMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
            ++        ++   +AG+    + H +R   AT   +AG     +    G K V   +
Sbjct: 253 HVSEEILQRAVQSARQQAGIVKPATCHTLRHSFATHLLEAGHDIRTVQELLGHKDVSTTQ 312

Query: 321 TYTK 324
            YT 
Sbjct: 313 IYTH 316


>gi|313885888|ref|ZP_07819628.1| site-specific recombinase, phage integrase family [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|312924643|gb|EFR35412.1| site-specific recombinase, phage integrase family [Porphyromonas
           asaccharolytica PR426713P-I]
          Length = 414

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 46/312 (14%), Positives = 101/312 (32%), Gaps = 37/312 (11%)

Query: 46  AYMSALTGSTPKREYINSPRKKPTTLKWLISEY----RKSAHWGSLAVNSRISF---ESY 98
            +   L+    K EY+   ++   T   L  +Y    R+   +      +   +     +
Sbjct: 85  EFSDELSLERIKSEYLGK-KEDVETFMTLFEKYNNDVRQQVGYTK-TPATLQKYEVCRKH 142

Query: 99  FDQIIRKS---GDFDYRKITTKHIRSG----VESRKHTPSSAIQFLTSMRVLFKWAVRQE 151
           F   ++      D    ++T   I         + K   ++A + L +++ +  +     
Sbjct: 143 FQAFLKTKYRRSDLKIAELTVLVIHDFELYLRTAAKQKQNTANKTLKTLKTIVLFGKSIG 202

Query: 152 YVAINPCLSVERPKRK-TEGIRPWTKEDMQQFKSFW----SEGSQPRLAFEFLLYSGLRC 206
            +  +P  + +        G    ++E++    +            R  F F  ++GL  
Sbjct: 203 VINHDPFRNHQFTSTPVDRGF--LSEEEVMDIATKDLSDIPRLELVRDIFVFSCFTGLAY 260

Query: 207 SDSCRAGVQHL----QNNIFSIKTQKTGTI---ITVELPDGFMKLLAMTPIGKETFFINN 259
            D      +H+           + QKT      + +E+P   +         ++  F   
Sbjct: 261 IDVANLKSEHIVTLDGKEWIMTRRQKTKVESNVLLLEVPKSIIAKYEGQTAREDMLFPIL 320

Query: 260 DKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVD 317
             QKMN+     + K  A   G+ K  + H  R   AT+    G     +    G   + 
Sbjct: 321 SNQKMNS-----YLKEIADICGIKKNLTFHLARHTFATLCLSKGVPMESVSKMLGHTNIR 375

Query: 318 QAETYTKGADRI 329
             + Y +  ++ 
Sbjct: 376 TTQIYARITNKK 387


>gi|260655607|ref|ZP_05861093.1| xylulose-5-phosphate/fructose-6-phosphate phosphoketolase
           [Jonquetella anthropi E3_33 E1]
 gi|260629660|gb|EEX47854.1| xylulose-5-phosphate/fructose-6-phosphate phosphoketolase
           [Jonquetella anthropi E3_33 E1]
          Length = 391

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 50/349 (14%), Positives = 112/349 (32%), Gaps = 40/349 (11%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMS-----ALTGSTPKREYINSPRKKPT 69
             +H +  Y   +G  R++R      +T++    +     ++ G     +     R    
Sbjct: 34  IGKHARTFYAVYRGKTRQLRKFKIGSATYLTLAQARDICKSVLGRIALGQDPQEERLAEK 93

Query: 70  TLKWLISEYRKSAHWGSLA---VNSRISFESYFDQIIRKSGDFDYRKITTKHI---RSGV 123
           T    + ++ +  ++  +      +    E+ F +I+++        I+ + I   R  +
Sbjct: 94  TNTISLRKFFEEIYFPKIRRERPKTAQRTETNFLRILKEDLSKPLASISAERIIKIREQL 153

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK-RKTEGIRPWTKEDMQQF 182
             R    +S  ++   +R    +A  Q  +   P    E+ K   T+ IR  T ++ ++ 
Sbjct: 154 LRRGLGLTSVKRYENEIRASLNYAASQGLIE--PIKVCEQIKCETTQRIRYLTPDEEERL 211

Query: 183 KSFWSEGSQPRL----------------AFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSI 224
           +    E  +                        L +G+R     R   + +        +
Sbjct: 212 QKALKERDEELRKTHKNIRGRYADYLEPLITLSLKTGIRRGAMLRLEWRDIDFAAKTILV 271

Query: 225 KTQ--KTGTIITVELPD----GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKAT 278
           + +  KTG    + L               P   +  F +    +         +K    
Sbjct: 272 RGEICKTGKSRRIPLSPIAFETLKAWREQQPQENKYVFPSAYTNQ-PKKHCKCAWKNLLI 330

Query: 279 KAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           +A + N   H +R   A+    AG   + +    G  T++    Y   A
Sbjct: 331 RANITNFHWHDLRHDFASKLVMAGVDLNTVRELLGHSTLEMTLRYAHLA 379


>gi|228982672|ref|ZP_04142931.1| Integrase [Bacillus thuringiensis Bt407]
 gi|228776855|gb|EEM25163.1| Integrase [Bacillus thuringiensis Bt407]
          Length = 327

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 46/314 (14%), Positives = 101/314 (32%), Gaps = 49/314 (15%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIR------KSGDFDYRKITT------KHIRSG 122
           I ++         A N+  S+    +          KS +F+++++          +R  
Sbjct: 11  IEDFLLYLEGLRYAPNTIKSYRFDLEGFFTFAIPHNKSMEFEFKRLEQLLLLYINSLRVY 70

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-PWTKEDMQQ 181
               ++  S+  +     R   K+  + EY++ +    +E  K K    +     E++ +
Sbjct: 71  NNKSEYEISTLNRKRACFRKYIKFLNKWEYISSDFSHKIESMKNKKNPNKDILNHEEVAK 130

Query: 182 FK--------------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK 225
            +                  +  + R  F  LLYSGLR S+      +H      I  + 
Sbjct: 131 VQYYLDSIQTSPWLTPKKQEKYIRNRFIFYTLLYSGLRVSELTNLRWKHFNITEGIIIVD 190

Query: 226 TQKTGTIITVELPDGFMKLLAMT------------PIGKETFFINNDKQK---MNATQFS 270
             K     T+ + +  ++                 PI     F  N+K     +      
Sbjct: 191 EGKGNKNRTIPIHEELVQEYDTYKSSLLSMYGKEHPILTGYLFPRNEKHPDISLTTKTIR 250

Query: 271 IWFKAKATKAGV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGA 326
           +  +    ++ +   + S H +R   A+ S     +   L +  G        + Y    
Sbjct: 251 LIIRTIVKESSIVDKHISPHNLRHTFASYSVLNNISIPVLSSILGHSKKSITMDIYAHVI 310

Query: 327 DRIRLGIKNSRRIS 340
           D  +   +  +++S
Sbjct: 311 DDKQKENE-LKKLS 323


>gi|299137463|ref|ZP_07030645.1| integrase family protein [Acidobacterium sp. MP5ACTX8]
 gi|298600868|gb|EFI57024.1| integrase family protein [Acidobacterium sp. MP5ACTX8]
          Length = 430

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 41/330 (12%), Positives = 100/330 (30%), Gaps = 28/330 (8%)

Query: 40  ESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESY 98
             T + AY            +    R +    + L+  Y  S  +   L   +  ++ES 
Sbjct: 103 TPTRVAAYPLMRAAKAWLSFHRKLERPQEMWFEELLRAYSHSLVYNRGLVHRTVETYESK 162

Query: 99  FDQIIRKSGDFD-----YRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYV 153
               ++     +        +            +    +      ++R   ++A  + + 
Sbjct: 163 ARTFLKFFSRSNHNLSGISLLDVDAFMQEKVMEEWKAEAIASHCQAIRSFLRFAESRNWC 222

Query: 154 AINPCLSVERPKR-----KTEGIRPWTKED--MQQFKSFWSEGSQPRLAFEFLLYSGLRC 206
                  ++ P+      +++G   W +    ++ FK   +   + +         GLR 
Sbjct: 223 DRGIHQGIKSPRVPRNTGESKGP-TWPQVKKLLRSFKGQKASERRAKAMLMLCAIYGLRA 281

Query: 207 SDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAM-----TPIGKETFFINN 259
           S+     ++     N  F ++  K G +    +     + +        P         +
Sbjct: 282 SEVIGLQLEDFDWRNETFMVRRAKRGGVQHFPMEYEVGEAILAYLKQDRPRCASRLLFVS 341

Query: 260 DKQKMNATQFSIWFKAKATKA---GV---NKSAHGVRKFSATISADAGATAHELMATYGW 313
            +    A   +  ++A   +    GV   +   H +R   AT     G++ H++    G 
Sbjct: 342 LRAPYVAVSTTSLWRAVGPRLRSFGVQLNHVGVHSLRHACATRLLHKGSSLHQIADFLGH 401

Query: 314 KTVDQAETYTKGADRIRLGIKNSRRISSVV 343
           + +     Y +  D   L      R+  + 
Sbjct: 402 RDLKSVSIYAR-CDVRSLRKVAQFRLEGLK 430


>gi|288942115|ref|YP_003444355.1| integrase family protein [Allochromatium vinosum DSM 180]
 gi|288897487|gb|ADC63323.1| integrase family protein [Allochromatium vinosum DSM 180]
          Length = 425

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/277 (14%), Positives = 91/277 (32%), Gaps = 34/277 (12%)

Query: 96  ESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL-FKWAVRQEYV 153
             YF++ ++   G    + +    I + +E +  +   A   L +   L F +A  +E +
Sbjct: 126 RRYFERDLLPVLGRRQLKSVKRSEIIALIEDKAESAPRAAALLLAYTKLLFSYAEDRELI 185

Query: 154 AINPCLSVERPKRKT-----EGIRPWTKEDMQQFKSFWSEGSQPRL---AFEFLLYSGLR 205
            ++P   ++  +  +     +  R   + +++ F          RL   A + +L +G R
Sbjct: 186 EVSPATGIKPGRISSAMKSVKRGRVLDEAEIRDFWIGADAVGVHRLTALALKLILVTGQR 245

Query: 206 CSDSCRAGVQHLQNNIFSI---KTQKTGTIITVELPDGFMKLLAMTPIG----------- 251
             +        ++   ++I   +  KT T  +V L +    +L                 
Sbjct: 246 PGEVVGMRWDEVEGETWTIPASRRGKTSTAHSVYLTETARVILEQARAEVARLSERRRWE 305

Query: 252 -KETFFINNDKQKMNATQFSIWFKAKATKAGVN-------KSAHGVRKFSATISADAGAT 303
                F + + +       S      A + G            H +R+   T  ++ G +
Sbjct: 306 PSGYVFEHREGKPATTAGLSRALDRYADQLGAKDHPDWGRWHPHDLRRTCRTRLSEIGIS 365

Query: 304 AHELMATYGWKTVDQAETYT--KGADRIRLGIKNSRR 338
                   G   +     Y   + +  IR  ++   R
Sbjct: 366 EEVAERVIGHTKLGVVAIYNQHRYSLEIRAALEAWER 402


>gi|78048040|ref|YP_364215.1| phage-related integrase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|78036470|emb|CAJ24161.1| phage-related integrase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 400

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 44/304 (14%), Positives = 103/304 (33%), Gaps = 28/304 (9%)

Query: 52  TGSTPKREYINSPRKKPT--TLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGD 108
            G +P +E      +     T      ++ +      +A ++R    S +++ +  K G+
Sbjct: 78  AGKSPAKEKARDKARVKGAETFGAWAEKWLRGYQ---MADSTRDMRRSVYERDLKPKFGN 134

Query: 109 FDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
               +IT + +R+  ++   +  P++A+     +  +++WA+ +     NP   V     
Sbjct: 135 QKLVEITHEDLRALTDAIVERGAPATAVHVREVVMQVYRWAIERGQKVENPAELVRPTSI 194

Query: 167 KT--EGIRPWTKEDMQ---QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQN 219
                  R  T +++    Q+          R A + LL + +R S+   A     +  +
Sbjct: 195 AKFEPRDRALTPDEIGLMYQYMERIGTAPSIRAAAKLLLLTMVRKSELTNATWSEINFSD 254

Query: 220 NIFSIKTQ--KTGTIITVELPDGFMKLLAMTPI---GKETFFINNDKQ--KMNATQFSIW 272
            + +I  +  K      V L    + +         G +    +       M++   +  
Sbjct: 255 ALLTIPKERMKRRNPHLVFLSRQALDIFIALKTFAGGSDYVLPSRYDSDLPMSSATLNQV 314

Query: 273 FKAKATKAGVNKS------AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
                  A            H +R+ ++T+  +AG     +      +       Y K  
Sbjct: 315 LTLTYRLAQKEGKPLAKFGPHDLRRTASTLLHEAGYNTDWIEKCLAHEQRGVRAVYNKAE 374

Query: 327 DRIR 330
            R +
Sbjct: 375 YREQ 378


>gi|261343791|ref|ZP_05971436.1| site-specific recombinase, phage integrase family [Providencia
           rustigianii DSM 4541]
 gi|282568175|gb|EFB73710.1| site-specific recombinase, phage integrase family [Providencia
           rustigianii DSM 4541]
          Length = 329

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 57/307 (18%), Positives = 106/307 (34%), Gaps = 24/307 (7%)

Query: 26  RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG 85
           R+G   R R    HE+     Y  AL+    K     S   +P  L+ LI  +     W 
Sbjct: 20  RQGKRVRRRFDTKHEAVLFERY--ALSNKMHKDWLDKSNDIRP--LQDLIDLW-----WN 70

Query: 86  SLAVNSRISFESYFD--QIIRKSGDFDYRKITTKH---IRSGVESRKHTPSSAIQFLTSM 140
           +   ++    ++ F   +I     +    ++  K     R    +    PS+  +  +++
Sbjct: 71  TFGKSNAYGRDTLFRATRIATALDNPPMCQLNDKQLALYRELRLAAGIKPSTINRDFSAL 130

Query: 141 RVLFKWAVRQEY-VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199
             +F    R +  +  +P   + R K+K   +   T E+++   +    G   ++A    
Sbjct: 131 SGIFTALKRTDLFMGQHPIRGLGRLKQKATEMSYLTSEEIELLLNLLK-GDNKKVAI-LC 188

Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN 259
           L +G R  ++ +    H+  N       KTG    V +      ++     G    F   
Sbjct: 189 LSTGARWGEAVKLKRDHVIQNKIRFTFTKTGKARIVPISQEVADMICEKKSG--MLFPRT 246

Query: 260 DKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
                +   F    K       + ++ H +R   AT     G +   L    G  T+ Q 
Sbjct: 247 -----SYHMFRRHIKTIKPDMPLGQATHALRHTFATHFMMNGGSIITLQRILGHSTLQQT 301

Query: 320 ETYTKGA 326
            TY   A
Sbjct: 302 LTYAHFA 308


>gi|315163423|gb|EFU07440.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX0645]
          Length = 387

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 47/313 (15%), Positives = 93/313 (29%), Gaps = 48/313 (15%)

Query: 57  KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKIT 115
           + E     ++   T   L   +    H  ++   +    +++F +QI+   G      IT
Sbjct: 55  EIESTGISQRSIKTFSELYDLWMN-QHVKNIRNTTEQRIKNHFTNQILPSFGKMRLEVIT 113

Query: 116 TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE----GI 171
               +  +        S  +  +    +F + +    +  NP      PK          
Sbjct: 114 PAICQKILTEWSTKYQSYQKIKSYTSQVFNYGILIGVIKTNPMERTITPKSNHNFNEIEE 173

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLA--FEFLLYSGLRCSDSCRAGVQHLQ----------- 218
             +TKE+++QF     E    R    F    Y+G R  +      + +            
Sbjct: 174 EFYTKEELRQFFDCLQELKDDRALAFFRLAAYTGARKGEILGLTWKDIDFDKKTVQFNKT 233

Query: 219 -----NNIFSIKTQKT-GTIITVELPDGFMKLLAMTPI----------------GKETFF 256
                +    +   KT  +  T+ + DG + +L                           
Sbjct: 234 LVELSDGSLCVNPTKTESSKRTITIDDGTLTILKKWKRTVIKKNLSRGIRIDNMDDVPVI 293

Query: 257 IN---NDKQKMNATQFSIWFKAKATKAGVNKSA---HGVRKFSATISADAGATAHELMAT 310
                N K+      +     +K  +   +      HG RK  AT+  +AGA   ++   
Sbjct: 294 STIKANKKRDFLYKGYPNHVMSKIARKFPDMKIIKVHGFRKTHATLLFEAGAQVKDVQDR 353

Query: 311 YGWKTVDQA-ETY 322
            G  +     + Y
Sbjct: 354 LGHSSSKTTMDIY 366


>gi|311064154|ref|YP_003970879.1| integrase/recombinase [Bifidobacterium bifidum PRL2010]
 gi|310866473|gb|ADP35842.1| Integrase/recombinase (XerD/RipX family) [Bifidobacterium bifidum
           PRL2010]
          Length = 238

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/212 (16%), Positives = 67/212 (31%), Gaps = 27/212 (12%)

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI-RPWTKEDMQQFKSFWSEGSQP--RLA 195
            ++ +F +AV   ++  NP   V  PK  ++      +  +++       +  +P   L 
Sbjct: 4   VLKGIFDYAVSNGWIGENPVDRVTVPKIASDDDMVFLSVREVELLADEAEKIGKPVDGLL 63

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQN----------------NIFSIKTQKTGTIITVELPD 239
             +  Y+G R  +S    V  +                      + T K G    + +P 
Sbjct: 64  VRWQAYTGCRIGESLALKVGDVDAAKRRARIGRTWTDDGHGGSMLGTPKNGKARNIAIPR 123

Query: 240 GFMKLLAMT--PIGKETFFI--NNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKF 292
             M  +      +G + +                +  +      AG+     + H +R  
Sbjct: 124 FLMPQIKAQMDGMGDDDWLFRATRGGNVWTNAWRTRIWNKAVKAAGMEDEGVTIHSLRHT 183

Query: 293 SATISADAGATAHELMATYGWKTVDQA-ETYT 323
            A+ +   GA A  L    G  +      TYT
Sbjct: 184 YASFAIAQGADAKTLQMQLGHSSPSITLNTYT 215


>gi|301163037|emb|CBW22585.1| putative integrase [Bacteroides fragilis 638R]
          Length = 400

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/270 (14%), Positives = 93/270 (34%), Gaps = 26/270 (9%)

Query: 89  VNSRISFESYF----DQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF---LTSMR 141
             +  ++E+        + +   DF +  ++++ +    ++              L +M+
Sbjct: 126 EGTAKAYEATLHSMQKHLCKT--DFPFAHLSSRLVIKYRDTLLEAGVGKNTIGFYLHNMK 183

Query: 142 VLFK-WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-WSEGSQ---PRLAF 196
            +++   +    V  +P  ++ R + +    +      ++   +   S G+     R  F
Sbjct: 184 AVYRRGCLELNLVFPSPFCNI-RIRSEKTVKQSLPMNQVKSLANLSLSVGTPECLARDVF 242

Query: 197 EFLLYS-GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM-TPIGKET 254
            F +Y+ G+   D        +   +   + QKTG ++ + +      LL        + 
Sbjct: 243 MFSIYTRGMSFVDIAFLKKSDIFPGVIRYRRQKTGQLLEIGINRQIQSLLERYGDTSGDY 302

Query: 255 FFI---------NNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAH 305
            F          +  K+  N  ++++   ++     +    H  R   AT++ + G   H
Sbjct: 303 LFPLVDESETPYSGYKKAYNKIRYALKKISQRIDINIPLRLHAARHCWATMARENGTPLH 362

Query: 306 ELMATYGWKTVDQAETYTKGADRIRLGIKN 335
            +    G  +      Y K  DR  L   N
Sbjct: 363 TISECLGHSSEKVTRIYLKELDRSVLDEVN 392


>gi|300872273|gb|ADK38964.1| IntI4 [Vibrio sp. V4(2010)]
          Length = 290

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 42/289 (14%), Positives = 85/289 (29%), Gaps = 57/289 (19%)

Query: 93  ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEY 152
            ++  +  + I          +  K +   +         A +  +       +  ++  
Sbjct: 1   RAYLHWITRYIHFHNKKHPSLMGDKEVEEFLTYLAVQGKVATKTQSLALNSLSFLYKE-- 58

Query: 153 VAINP-CLSVE--RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDS 209
           +   P  L +   R + + +     T++++++         + +L  + L  SGLR  + 
Sbjct: 59  ILKTPLSLEIRFQRSQLERKLPVVLTRDEIRRLLEIVDP--KHQLPIKLLYGSGLRLMEC 116

Query: 210 CRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLAMTPIGKETFFINN-------- 259
            R  VQ +  +  +I+    K G   TV L       L       + ++  +        
Sbjct: 117 MRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHLKEQIALAKRYYDRDLHQKNYGG 176

Query: 260 --------------------------------------DKQKMNATQFSIWFKAKATKAG 281
                                                  +  MN T      +  A +AG
Sbjct: 177 VWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVMRRHHMNETVLQKAVRRSAQEAG 236

Query: 282 VNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           + K+   H +R   AT   + GA    +    G   V     YT   DR
Sbjct: 237 IEKTVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTTNYTHVLDR 285


>gi|282863496|ref|ZP_06272555.1| integrase family protein [Streptomyces sp. ACTE]
 gi|282561831|gb|EFB67374.1| integrase family protein [Streptomyces sp. ACTE]
          Length = 588

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 47/313 (15%), Positives = 103/313 (32%), Gaps = 57/313 (18%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKH 128
           TL+  ++ + ++     ++ N+   +    +  +I   G     K+  +H+    +  + 
Sbjct: 77  TLETWLTHWVENIAAAHVSENTIDGYRVAVNHHLIPGLGAHRLEKLQPEHLERFYKKMQD 136

Query: 129 T---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +     +A Q   ++R     AVR+ ++A+NP    + P+ + E + P++ E++Q   + 
Sbjct: 137 SGSSAGTAHQVHRTLRTALNEAVRRAHLAVNPATIAKAPRLEEEEVEPYSVEEVQHLLAE 196

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI--------------------- 224
            ++  +    +   L  GLR  +        +  ++  I                     
Sbjct: 197 AAKH-RNTARWVIALALGLRQGEVLGMQWGDVDFDLGVIRVRRGRLRPRYKHGCGERCGR 255

Query: 225 ------------KTQKTGT----IITVELPDGFMKLLAMTP--------------IGKET 254
                       +  K          +  PD  ++LL                    K  
Sbjct: 256 KPGFCPQKINTRRETKNAKSRAGQRPIGAPDELLQLLRQHKEEQARERARARDLWTEKGY 315

Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGW 313
            F +   + +N       +K     AGV +   H  R  +AT+    G     + A  GW
Sbjct: 316 VFTSPTGEPLNPNTDFHKWKELLKAAGVRDARLHDARHTAATVLLILGVPDAVVDAIMGW 375

Query: 314 KTVDQAETYTKGA 326
           +    A    +  
Sbjct: 376 EPGKSARMRRRYQ 388


>gi|229824886|ref|ZP_04450955.1| hypothetical protein GCWU000182_00235 [Abiotrophia defectiva ATCC
           49176]
 gi|229790889|gb|EEP27003.1| hypothetical protein GCWU000182_00235 [Abiotrophia defectiva ATCC
           49176]
          Length = 349

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/252 (15%), Positives = 82/252 (32%), Gaps = 32/252 (12%)

Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
           ++     E   +      + L ++R  +K+  ++E +  NP + V+ PK   + I     
Sbjct: 95  RYYIKDGEGHGNKEKGIKRKLVALRTFYKYYYKKERIKSNPSVLVDTPKLHDKAIVRLEP 154

Query: 177 EDMQQFKSFWSEGS---------------QPRLAFEFLLYSGLRCSDSCRAGVQHLQ--N 219
           E++         G                +       LL +G+R S+     +  +    
Sbjct: 155 EEVANLLDNIESGDGLSSSQAKYHEKTSVRDLAIVTLLLSTGIRVSECVGIDLNDIDFKT 214

Query: 220 NIFSIKTQKTGTIITVELPDGF----------MKLLAMTPIGKETFFINNDKQKMNATQF 269
           N   +  +K G    V   D             + +      K  FF++  K++++    
Sbjct: 215 NGIKVH-RKGGYETVVYFGDEAETALKNYLKERQTIEAADGHKNAFFLSIQKKRISVRAV 273

Query: 270 SIWFKAKATK-AGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK-G 325
            I  K  ++    + K + H +R    T         + +    G K V+   + Y    
Sbjct: 274 EILVKKYSSLVTTIKKITPHKLRSTYGTSLYRETGDIYLVADVLGHKDVNTTKKHYAAIE 333

Query: 326 ADRIRLGIKNSR 337
            DR R      +
Sbjct: 334 EDRRRKAANIVK 345


>gi|225353239|gb|ACN88324.1| integrase [Riemerella anatipestifer]
          Length = 284

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/291 (13%), Positives = 86/291 (29%), Gaps = 62/291 (21%)

Query: 84  WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHTPSSAIQFLTS 139
           +   ++ +  ++  +    IR  G      + +  + + +      RK + S+  Q L +
Sbjct: 1   YLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVSVSTHRQALAA 60

Query: 140 MRVLFK--WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE 197
           +   +         ++       + RP+         T +++ +   F  EG   RL  +
Sbjct: 61  LLFFYGKVLCTDLPWLQ-----EIGRPRPSRRLPVVLTPDEVVRILGFL-EGEH-RLFAQ 113

Query: 198 FLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF 255
            L  +G+R S+  +  V+     +    ++  K      + LP+     L         +
Sbjct: 114 LLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAW 173

Query: 256 FINN---------------------------------------------DKQKMNATQFS 270
           ++ +                                              +  M    F 
Sbjct: 174 WLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQ 233

Query: 271 IWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
             FK    +AG+ K  + H +R   AT    +G     +    G   V   
Sbjct: 234 RAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTT 284


>gi|154501018|ref|ZP_02039056.1| hypothetical protein BACCAP_04705 [Bacteroides capillosus ATCC
           29799]
 gi|150270042|gb|EDM97561.1| hypothetical protein BACCAP_04705 [Bacteroides capillosus ATCC
           29799]
          Length = 381

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 37/286 (12%), Positives = 83/286 (29%), Gaps = 29/286 (10%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
            +  +      ++ +      +  ++  S+      +          +I  +HI S +  
Sbjct: 65  SRSMSFSVWAEQWYQDYV-TQVQPSTYSSYRYTLKLLKAFFDHMVLSEIKPQHINSFMTK 123

Query: 126 RKHTPSSAIQFLT---SMRVLFKWAVRQEYVAINPCLSVERPKRKTE---GIRPWTKEDM 179
                 S  +       +  +F  A     +  NP    +  + ++    G   ++ E++
Sbjct: 124 LLKEGCSLSKISKCRSMLIQIFDAAENNGLILKNPARKAKAIRTQSTEDTGKDAFSYEEV 183

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT----- 234
                 +        +   LL SGLR  +      + +  +   I   K   ++      
Sbjct: 184 -ALLKKYLRNDLLGNSIRLLLGSGLRVQELLALRPEDIAEDGSEICVNKAIKMVDGKPTI 242

Query: 235 -----------VELPDGFM--KLLAMTPIGKETFFINNDKQKMNATQ--FSIWFKAKATK 279
                      V +P+ +    +   T  GK   + +  K  + +     + ++ A    
Sbjct: 243 GPPKSKRSCRTVPIPEDYRPYAVYLRTHGGKSYIWTSTRKSLLYSVGTFRNKYYAALKRV 302

Query: 280 AGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            G+ K   H  R    T          E+    G  TV     Y  
Sbjct: 303 PGIRKLGPHCCRHTYVTHLEANQVPLAEIARLVGHSTVSTTNRYLH 348


>gi|323483758|ref|ZP_08089138.1| phage integrase family Integrase/recombinase [Clostridium symbiosum
           WAL-14163]
 gi|323402949|gb|EGA95267.1| phage integrase family Integrase/recombinase [Clostridium symbiosum
           WAL-14163]
          Length = 289

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 41/275 (14%), Positives = 79/275 (28%), Gaps = 29/275 (10%)

Query: 83  HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT--PSSAIQFLTSM 140
           ++      SR +   Y   +       D + +  + +    +    T  P+S    L S+
Sbjct: 22  NYLHQEERSRNTITKYIRDLKVFFTFLDGQPMDKEALLDWKKHLTQTHAPASVNSMLASV 81

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGI----RPWTKEDMQQFKSFWSEGSQPRLAF 196
                W              V+  K + +      +  T E+ ++           RL+ 
Sbjct: 82  NKFLDWLELPGL-------KVKPLKIQRQIFSNPKKELTAEEYRRLIKAAESRQNNRLSL 134

Query: 197 EF--LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM----TPI 250
               +  +G+R S+      +  +           G    + LP    + L        I
Sbjct: 135 LLQTICSTGIRVSELKFITAESAKTGRAEADC--KGKTRIIFLPPDLCRALRHYCRERGI 192

Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGATAHEL 307
                F   +   ++ +      K     AGV       H +R   A            L
Sbjct: 193 DAGIIFCTKNGCPLDRSNIWKDMKMLCDSAGVEPGKVFPHNLRHLFARTYYALEKDLSRL 252

Query: 308 MATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
               G   V     YT  +     G+ +SR++S +
Sbjct: 253 ADLLGHSNVSTTRIYTMES-----GLMHSRQLSRM 282


>gi|303237761|ref|ZP_07324320.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
 gi|302482047|gb|EFL45083.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
          Length = 410

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 46/272 (16%), Positives = 91/272 (33%), Gaps = 31/272 (11%)

Query: 94  SFESYF-DQIIRKSGDFD--YRKITTKHIRSGVESRKHTPSSAIQF----LTSMRVLFKW 146
               +F + +I K G  D    + T   ++            A       L +++ +  +
Sbjct: 138 VLRRHFAEFLIYKYGKKDIGLAEFTPSVVQDFELYLSTAAGCAYNTSVKKLKALKTVTIY 197

Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ---PRLAFEFLLYSG 203
           A ++ Y+  +P L+  R   +       T E++ +  +      +    R  F F  ++G
Sbjct: 198 AQKRGYLLHDPFLN-HRFHLEPVNRGFLTDEEIMKIANKDLAIQRLELVRDVFIFSCFTG 256

Query: 204 LRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDGFMKLLAMTP-----IGKET 254
           L   D       ++           K QKT     V L D    ++A         GK  
Sbjct: 257 LAYIDVSNLTPDNIVTLDDKQWIMTKRQKTNVETNVLLLDIPKSIIAKYSHKTYRDGKLF 316

Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYG 312
             + N K        + + K  A   G+ K  + H  R   AT+S   G     +    G
Sbjct: 317 PILTNQKT-------NAYLKEIADICGIKKNLTFHLARHTFATMSLSKGVPMESVSKMLG 369

Query: 313 WKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
              +   + Y +  ++      +  +++  +D
Sbjct: 370 HTNIKTTQIYARITNKK--IEHDMEQLAGKLD 399


>gi|55980996|ref|YP_144293.1| DNA integration/recombination/invertion protein [Thermus
           thermophilus HB8]
 gi|55772409|dbj|BAD70850.1| DNA integration/recombination/invertion protein [Thermus
           thermophilus HB8]
          Length = 391

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 41/248 (16%), Positives = 87/248 (35%), Gaps = 32/248 (12%)

Query: 104 RKSGDFDYRKITTKHIRSGVESRKHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
              G    +++   H+R+ V+        P +  + L  ++ LF+ A+R E VA NP  +
Sbjct: 113 DPLGRMRLQEVKPVHVRAAVDRVAEAGYAPRTVGRVLMRLKALFREALRLELVARNPAEA 172

Query: 161 VE-RPKRKTEGIRPWTKEDMQQFK--SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217
           V  R  +  +  R    +++ +    +  S      L    +L +GLR  ++     + +
Sbjct: 173 VRLRLPKGEKTARALEPQEVARLLETAEASRSKDMALLLRLMLETGLRRGEALALQWRDI 232

Query: 218 QNNIFSIKT-------QKTGTIITVELPDGFMK------------------LLAMTPIGK 252
                 +         +  G     + P    K                  L  +TP   
Sbjct: 233 DLEAGELTVWRSWTKARGKGAFSEPKTPTAKRKVPLPRGLLLRLKARREELLERLTPEEV 292

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATY 311
           +  F+    + ++   F+ + +  A +AG+ +   H +R   AT++   G     +    
Sbjct: 293 DGLFLVGGVKPVDPDAFNHYLRRLAERAGLGRVRVHDLRHTWATLALSRGVPLEVVSERL 352

Query: 312 GWKTVDQA 319
           G  +    
Sbjct: 353 GHASPTIT 360


>gi|332139698|ref|YP_004425436.1| site-specific recombinase, phage integrase family protein
           [Alteromonas macleodii str. 'Deep ecotype']
 gi|327549720|gb|AEA96438.1| site-specific recombinase, phage integrase family protein
           [Alteromonas macleodii str. 'Deep ecotype']
          Length = 297

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 44/277 (15%), Positives = 88/277 (31%), Gaps = 36/277 (12%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES---------RKHTPSSAIQ 135
           G LA NS+ S  S  + I    G  D  +    H     ++         +  +  S  +
Sbjct: 12  GRLAPNSQRSIASQLNSIADMMGWTDEEREDKYHHIDFQQATYIKTKLITQGWSARSINR 71

Query: 136 FLTSMRVLFKWAVRQEYVAINP------CLSVERPKRKTEGIRPWTKEDMQQF-----KS 184
            + ++R + K AV    V   P        ++ +        +P + E + +      + 
Sbjct: 72  AMIAIRSIVKIAVLSGLV---PEMQSIQLRAISKVNHGKHDGKPLSTEQVNKLLIKLQRD 128

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH-LQNNIFSIKTQKTGTIITVELPDG--- 240
               G +       LL +GLR S+     V+  ++     ++  K     TV LP     
Sbjct: 129 KSVLGIRNYALISTLLGTGLRRSELVALLVEDFIEGTALIVRKGKGNKSRTVHLPAWTQL 188

Query: 241 -FMKLLAMTPIGKETFFIN-------NDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRK 291
              + L +        F+             +++       K      G+   S H +R+
Sbjct: 189 ALNQWLTLRSKSNGHLFVRVAKGGNIKHNTALSSCSIYSLTKKSLASIGIEGVSPHDLRR 248

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
              T   +     + +    G + +     Y K  ++
Sbjct: 249 TFITRLLEQNVDINTVRQMAGHEDISTTIMYDKRDEK 285


>gi|307286635|ref|ZP_07566725.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX0109]
 gi|306502264|gb|EFM71546.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX0109]
 gi|315152696|gb|EFT96712.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX0031]
          Length = 387

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 48/319 (15%), Positives = 93/319 (29%), Gaps = 48/319 (15%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDF 109
           L     + E          T   L   +    H  ++   +    +++F +QI+   G  
Sbjct: 49  LARFQIEIESTGISHHSIKTFSELYDLWM-DQHVKNIRNTTEQRIKNHFTNQILPSFGKM 107

Query: 110 DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
               IT    +  +        S  +  +    +F + +    +  NP      PK    
Sbjct: 108 RLEVITPAICQKILTEWSTKYHSYQKIKSYTSQVFNYGILIGVIKTNPMERTITPKSNHS 167

Query: 170 ----GIRPWTKEDMQQFKSFWSEGSQPRLA--FEFLLYSGLRCSDSCRAGVQHLQ----- 218
                   +TKE+++QF     E    R    F    Y+G R  +      + +      
Sbjct: 168 FNEIEEEFYTKEELRQFFDCLQELKDDRALTFFRLAAYTGARKGEILGLTWKDIDFDKKT 227

Query: 219 -----------NNIFSIKTQKT-GTIITVELPDG----------------FMKLLAMTPI 250
                      +    +   KT  +  T+ + DG                  + + +  I
Sbjct: 228 VQFNKTLVELSDGSLCVNPTKTESSKRTITIDDGTLTILKKWKRTVIKKNLSRGIRIDNI 287

Query: 251 GKETFFIN---NDKQKMNATQFSIWFKAKATKAGVNKSA---HGVRKFSATISADAGATA 304
                      N K+      +     +K  +   +      HG RK  AT+  +AGA  
Sbjct: 288 DDVPVISTIKANKKRDFLYKGYPNHVMSKVARKFPDMKIIKVHGFRKTHATLLFEAGAQV 347

Query: 305 HELMATYGWKTVDQA-ETY 322
            ++    G  +     + Y
Sbjct: 348 KDVQDRLGHSSSKTTMDIY 366


>gi|42527350|ref|NP_972448.1| DNA integrase [Treponema denticola ATCC 35405]
 gi|41817935|gb|AAS12359.1| DNA integrase [Treponema denticola ATCC 35405]
          Length = 335

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 50/304 (16%), Positives = 95/304 (31%), Gaps = 57/304 (18%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----KHTPSSAIQFLTSM 140
              +  +  ++  +  + IR++ + + + ++   I + V       K   SS  Q L ++
Sbjct: 31  KHYSKRTMEAYSYWISRFIRENKNKNLKTLSDTEINAFVSRLAVKEKAAASSQNQALAAL 90

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200
             L+K           P  ++ R K+  +     T+E+  +  S   E     L    L 
Sbjct: 91  LFLYK--NILGLTIKTP-ENIVRAKKPKKLPAIMTREETAKIFSLLPENDYGLLIR-LLY 146

Query: 201 YSGLRCSDSCRAGVQHLQ--NNIFSIKTQKT----GTIITVELPDGFMKLLAMTPIGKET 254
            +G+R  ++ R  +Q +    N  ++   K      T++ V L     K +    +  E 
Sbjct: 147 GTGMRLMEALRLRIQDIDFGKNEITVHCGKGAKDRKTVLPVSLKFPLQKHMEKVRLIHEA 206

Query: 255 ------------FFINNDKQKMNATQFSIWF----KAKATKA------------------ 280
                       F +       +      W     +    K                   
Sbjct: 207 DCKEGFGSVPLPFALAKKYPNASKAWAWQWVFPQARRWRNKETGEQGRHHIDPSVIQRTL 266

Query: 281 -------GVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
                  G+ K    H  R   AT   +AG     +    G   V     YT   +R  L
Sbjct: 267 HEAVLRSGIPKPIGCHTFRHSFATHLLEAGYDIRTIQELLGHSDVKTTMVYTHVLNRGGL 326

Query: 332 GIKN 335
           GI++
Sbjct: 327 GIQS 330


>gi|309802554|ref|ZP_07696658.1| site-specific recombinase, phage integrase family [Bifidobacterium
           dentium JCVIHMP022]
 gi|308220618|gb|EFO76926.1| site-specific recombinase, phage integrase family [Bifidobacterium
           dentium JCVIHMP022]
          Length = 273

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 36/270 (13%), Positives = 77/270 (28%), Gaps = 14/270 (5%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
               I+ +  S      +  +  +       +    G      +    +     S++  P
Sbjct: 10  WAEYINGWLDSLKAAGYSTATLHTRRCQMTAMGNALGGSPL-DVGGNGLVGYFASKEWKP 68

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
            +      +    F+W    +    +P   +   +R     RP   + +    +      
Sbjct: 69  ETRKSARNATVSFFRWIRAHDLRDDDPSQELPSVRRPQTHPRPCPDKVI--LSALSKAND 126

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQN---NIFSIKTQKTGTIITVELPDGFMKLLAM 247
           + +L        GLR S+        + +       I          V LPD    L+  
Sbjct: 127 EEQLMLRLGAECGLRRSEIASVSSTDVMDDLVGRSLIVRGLYDKQRLVPLPDDLADLITA 186

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHEL 307
                +  F    +  + A+                 + H +R   AT + +A      +
Sbjct: 187 ---HHDYLFPGRWQGHVEASYIGKHLSRLLD----GWTTHSLRHRYATRAYEATHDLLLV 239

Query: 308 MATYGWKTVDQAETYTKGAD-RIRLGIKNS 336
               G  +V+  + Y    D R+R G++  
Sbjct: 240 SKLLGHASVETTQRYVAMPDERLRAGLEAV 269


>gi|331648200|ref|ZP_08349290.1| integrase or site-specific recombinase [Escherichia coli M605]
 gi|331043060|gb|EGI15200.1| integrase or site-specific recombinase [Escherichia coli M605]
          Length = 415

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 53/359 (14%), Positives = 122/359 (33%), Gaps = 39/359 (10%)

Query: 22  IYYFRKGHGRRIRLPYPHE----------STFIPAYMSALTGSTPKREYINSPRKKPT-- 69
            Y +R    R   +   +              I A      G +P     +  +K     
Sbjct: 38  RYDYRINGRRETLVIGQYGRDGISLAEAREELIAAKKLLKAGQSPAAAKRDGIKKIRGAE 97

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVES--R 126
           T       Y K      LA ++R   ++  D+ I+   G+    +ITT  +R   +    
Sbjct: 98  TFAVHTDSYMKHVI---LADSTRAMKQAVIDRDILPVLGNKMMTEITTSMVRDLCDRIVE 154

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE--RPKRKTEGIRPWTKEDMQQF-K 183
           +   ++A+Q    +  +++ A  + +   NP   ++           R  T E++  F +
Sbjct: 155 RGGRATAVQAREIISSVYRHANDRGHGLFNPAADIKPSSIAIFKPRERTLTPEEIGLFFR 214

Query: 184 SFWSEGSQ--PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIITVEL 237
           +  + G+    ++A + +L + +R  +   A    +    ++        K      + L
Sbjct: 215 TLDAIGAMGTMKMALKLVLITMVRKGEFTNATWDEIDFKKWTWTIPSDRMKGSRAHVIYL 274

Query: 238 PDGFMKLLAMTP--IGKETFFI---NNDKQKMNATQFSIWFKAKATKAGVNK------SA 286
           P     +L       G   + +    N ++ ++    +            N       + 
Sbjct: 275 PKQAQDILVGLQMCAGGSEYLVPGRYNFRKPLSNAALNSLIDRTVKIINENGEHIQDFTV 334

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345
           H +R+ ++T+  +AG  +  +      +       Y K A+  R      ++ + ++DS
Sbjct: 335 HDMRRTASTLLHEAGYPSDWIEKALAHEQKGVRAVYNK-AEYARQRAWMLQQWADMIDS 392


>gi|299141181|ref|ZP_07034318.1| integrase [Prevotella oris C735]
 gi|298577141|gb|EFI49010.1| integrase [Prevotella oris C735]
          Length = 444

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 50/292 (17%), Positives = 94/292 (32%), Gaps = 24/292 (8%)

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLT 138
           R    + +L+   R   E   D+ ++        +   +  R  ++ R    ++   +L 
Sbjct: 123 RTEGTYLNLSYADRNLHEFVKDKGVQDILIGAITEDLFEEYRFYLKKRGLKGTTINNYLC 182

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI--RPWTKEDMQQFKSFWSEGSQPRLAF 196
            +  L   AV Q  +  NP  + +  K        + +    +   +   SE  Q RL F
Sbjct: 183 WLSRLMYRAVSQNIIRCNPFENAKYEKEDKNIRYLQKYNVARLMAMRMNDSEAEQARLMF 242

Query: 197 EFLLYSGLRCSDSCRAGVQHLQ---NNIFSIK--TQKTGTIITVELPDGFMKLL-AMTPI 250
            F  ++GL  +D      +H+Q   +    I+   QKT     V L      ++      
Sbjct: 243 IFSCFTGLAIADMETLQYKHIQTTADGQKYIRKERQKTKVEFVVPLHPIAETIISHCRKA 302

Query: 251 GKETFFINNDKQKMNATQFSIWFK-------------AKATKAGV--NKSAHGVRKFSAT 295
                    D+Q M        F                    G+    S H  R    T
Sbjct: 303 NHNDLTTRQDEQTMKEKGDGFVFHPDSSRSVMNSKLYIVGKACGISQRLSFHMARHTFGT 362

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
           +S  AG     +    G  ++   + Y +  D  ++    +R I+   + + 
Sbjct: 363 MSLSAGIPIESIAKMMGHASISSTQIYAQVTD-CKISEDMNRLIAKHQEKNK 413


>gi|238025784|ref|YP_002910015.1| Site-specific recombinase, phage integrase family protein
           [Burkholderia glumae BGR1]
 gi|237874978|gb|ACR27311.1| Site-specific recombinase, phage integrase family protein
           [Burkholderia glumae BGR1]
          Length = 358

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 46/280 (16%), Positives = 87/280 (31%), Gaps = 31/280 (11%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVE--- 124
           T    +  Y      G  ++ +  +   + D+ +      D D  +I    +    E   
Sbjct: 61  TWNDAVVRYVTERE-GLPSLETSKTHLRWLDRHLAGVALADIDRDRIDAIALAKRREPLT 119

Query: 125 ----------SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
                      R  +  +  + +  ++ +   AV  E++   P  +  R K   + IR  
Sbjct: 120 VRTKQGPVAIERTASIGTVRRVVGVLKAVLNAAVEWEWIDRAPVTA--RAKLPEKRIRWL 177

Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN----NIFSIKTQKTG 230
           T +  ++  +   +       F   L +GLR S+        +              K  
Sbjct: 178 TLDQAERLLAELPDHLAEMARF--SLETGLRRSNVTGLQWSQVDIVRRVAWIHPDQAKAK 235

Query: 231 TIITVELPDG------FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284
             ITV L D         +     P   ++ F+      +  T  + W KA A       
Sbjct: 236 KAITVPLSDTAIAVLLRQRAAKRAPAFVDSVFV-YRGTPVYQTSTAAWHKALARCGIREF 294

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             H +R   A+     G     L    GW+T++  + Y  
Sbjct: 295 RWHDLRHTWASWHVQRGTPLQVLKELGGWETMEMVQRYAH 334


>gi|134046324|ref|YP_001097809.1| phage integrase family protein [Methanococcus maripaludis C5]
 gi|132663949|gb|ABO35595.1| phage integrase family protein [Methanococcus maripaludis C5]
          Length = 295

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 42/282 (14%), Positives = 95/282 (33%), Gaps = 31/282 (10%)

Query: 74  LISEYRK--SAHWGSLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHIRSGV------- 123
           L+ ++ K  S H    + N+   ++S     +R    +  +  IT +   +         
Sbjct: 8   LVEKFLKFHSGH----SQNTVKYYKSGLKAFMRYFDENKTWENITIEDAINFYNGYNKTG 63

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS-VERPKRKTEGIRPWTKEDMQQF 182
           + R    ++ I+ L  +   ++WAV  +++  NP  + V+  K + +     +++ +   
Sbjct: 64  DGRAVNKNTKIKRLNDVNRFYEWAVEHQFLFKNPVKTFVKTLKFEKKERINLSEKQVATV 123

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDG 240
            +         +   FLL +G+R S+        +   +    I+  K G    V + + 
Sbjct: 124 LAKVMNYDY-YVYTLFLLKTGVRISEFQNILFNDVDLEDRSIYIRDGKGGKDRYVFIDNE 182

Query: 241 FMKLLAMTPI-------GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-----SAHG 288
            +  L                FF+    +K+        F+    +   +K     + H 
Sbjct: 183 LLNHLKKYIAYRENLNLKTNCFFVTEQGKKVTNYAIDK-FREYLKEVTKDKIPFDVTPHV 241

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
            R    T++ +       L    G   ++    Y       R
Sbjct: 242 FRHTFGTLACEDEMNLIVLSKIMGHSNLNTTSGYVHSNKESR 283


>gi|300742464|ref|ZP_07072485.1| phage integrase family protein [Rothia dentocariosa M567]
 gi|300381649|gb|EFJ78211.1| phage integrase family protein [Rothia dentocariosa M567]
          Length = 225

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/209 (16%), Positives = 66/209 (31%), Gaps = 7/209 (3%)

Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
           IT K +   + +    P++    L S+ + F++ +  E    +P   +    +     R 
Sbjct: 3   ITDKQVIKWLANPNWQPATRKSALQSIHLFFRYLISTETREDDPTHLIPSIPQPRYHSRA 62

Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233
                + Q     +   +         Y+GLR S+      Q+  +   SI T K G   
Sbjct: 63  IPSSVITQALRRTTS-VEEEFMILLGAYAGLRRSEIAALHTQNYADKWISI-TGKGGHTR 120

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFS 293
            +      +  L     G   +F        +A       K  +   G + + H +R + 
Sbjct: 121 HIPAHALLLPYLESKSTG--YYFAGRFTGHRSAD---NIAKKISRNLGQDYTPHQLRHWF 175

Query: 294 ATISADAGATAHELMATYGWKTVDQAETY 322
           AT           +    G   +   + Y
Sbjct: 176 ATTVYAESHNLRAVQELLGHADISTTQRY 204


>gi|294849556|ref|ZP_06790298.1| phage integrase [Staphylococcus aureus A9754]
 gi|294823693|gb|EFG40120.1| phage integrase [Staphylococcus aureus A9754]
          Length = 353

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 52/333 (15%), Positives = 115/333 (34%), Gaps = 28/333 (8%)

Query: 13  KERTR--HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT- 69
           + +TR   GK   Y  K  G+R R               A +    K   + S       
Sbjct: 8   RMKTRCYDGKKWQYEFKYEGKRYRKKGFRTK------REANSAGLDKLNELRSGFNIDNY 61

Query: 70  -TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRSGVE--S 125
            TL+     + K+     +  N+   + +    I + K G  +  KI  +  +  +   S
Sbjct: 62  ITLEEYFENWIKTYKQPVVKENTYRHYRNALQHIQKHKIGKMELSKINRQVYQKFINDYS 121

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV-----ERPKRKTEGIRPWTKEDMQ 180
           ++H   +  +   ++R     A+    +  NP   V     +  K + E     T+ ++ 
Sbjct: 122 KEHAKETIRKTNGAIRSALDDALYDGLIFKNPAYKVNYKAGKPTKSEQEKFISVTEYEIL 181

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTG-TIITVEL 237
           +      + ++  LA   ++ +G R S +    ++H+    N   I  +KT  +   + +
Sbjct: 182 K-DHVRKKRTRSSLALFIMICTGCRVSGARNIKIEHINQVKNTIFIDERKTDTSPRYISI 240

Query: 238 PDG----FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKF 292
                   M +++   I  + +        +N    +   K+      ++  ++H +R  
Sbjct: 241 AKSDMKHIMDVISTFAISYDGYIFKEAGSIINLHAINNALKSACRVNNISIITSHALRHT 300

Query: 293 SATISADAGATAHELMATYGWKTVD-QAETYTK 324
             +     G + H +    G K +      Y+ 
Sbjct: 301 HCSYLLAKGVSIHYISKRLGHKNIAITTSVYSH 333


>gi|224025070|ref|ZP_03643436.1| hypothetical protein BACCOPRO_01804 [Bacteroides coprophilus DSM
           18228]
 gi|224018306|gb|EEF76304.1| hypothetical protein BACCOPRO_01804 [Bacteroides coprophilus DSM
           18228]
          Length = 418

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 36/264 (13%), Positives = 83/264 (31%), Gaps = 28/264 (10%)

Query: 88  AVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFK 145
           +  +      Y   +    K  +   ++         +   K         ++S+R   +
Sbjct: 126 SPLTVSKHHLYLRDLYDFLKENNKLVKEFGIPDCLLFLRELKRKKRPWHHVVSSVRAFVR 185

Query: 146 WAVRQEYVAI------NPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195
           ++  +  +A       +  L + RPK   +    +++E++++          +G +    
Sbjct: 186 YSCERNLLADCNFSRWDRILCLHRPK-NPQLPSYYSREEIKKMLDAIDRSCPKGKRDYAM 244

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLL------AM 247
                  GLR SD       + +   N  S+   KTG  ++  L +     +        
Sbjct: 245 LLLAARYGLRASDIVGITYANFEWEFNRLSLVQAKTGKPVSFPLSEEIGSAIIDYIKFGR 304

Query: 248 TPIGKETFFINN--DKQKMNATQFSIWFKAKATKAGVNKS-----AHGVRKFSATISADA 300
             I     F+ +    Q+++    S         A ++ S      H +R   A    + 
Sbjct: 305 PDIDSPHVFLEHMAPYQRISPQALSRIVSEWMLAARIDISTRKHGPHSLRHSLAINLFEN 364

Query: 301 GATAHELMATYGWKTVDQAETYTK 324
           G +   +    G   +    +Y K
Sbjct: 365 GESPSVISEILGHSNLLTTMSYVK 388


>gi|223934401|ref|ZP_03626322.1| integrase domain protein SAM domain protein [bacterium Ellin514]
 gi|223896864|gb|EEF63304.1| integrase domain protein SAM domain protein [bacterium Ellin514]
          Length = 415

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 44/275 (16%), Positives = 87/275 (31%), Gaps = 26/275 (9%)

Query: 42  TFIPAYMSALTGSTPKREYIN-------SPRKKPTTLKWLISEYRKSAHWGSLAVNSRIS 94
            F+ A + A  G                  + +  T+   + ++ K+      +      
Sbjct: 100 EFVEA-LRARDGVPVSMPEAVRYYVKRHPSKLQVKTVAEAVDDFIKAKTDARRSERHVQD 158

Query: 95  FESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA 154
                 +        +   +T   I+  +      P S   F  ++   FKWA R++Y+ 
Sbjct: 159 LSHRLGKFKDAF-HCNLTMVTEPEIQLFLGKMDLAPRSRNNFRATIVSFFKWAKRKKYLP 217

Query: 155 INP--CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRA 212
           ++      +E  +     I+ +T E++    +   E   P L      ++GLR S+ CR 
Sbjct: 218 LDWDEVSGIEVIEDGEGEIKIFTPEELVAILTHADEKLIPFLV--IGAFAGLRSSEICRL 275

Query: 213 GVQHL---QNNIFSIK---TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA 266
             Q +         +K    +KT     V +P+     L          +          
Sbjct: 276 DWQQIGVGDGKYIEVKAKDARKTKQRRLVPIPENLRLWLKPYSKSTGKIW------PYLH 329

Query: 267 TQFSIWFKAKATKAGVNKSAHGVRKFSAT-ISADA 300
           T      +     A V    +G+R    +   A+A
Sbjct: 330 TYLYELLEVALVDAKVKWKKNGLRHSFISYRVAEA 364


>gi|186476682|ref|YP_001858152.1| integrase family protein [Burkholderia phymatum STM815]
 gi|184193141|gb|ACC71106.1| integrase family protein [Burkholderia phymatum STM815]
          Length = 350

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 57/353 (16%), Positives = 111/353 (31%), Gaps = 55/353 (15%)

Query: 13  KERTRHGKIIYYFRKGHG--------RRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64
           + R  HG   YY+R   G        ++ RL        +P    A        +     
Sbjct: 15  RWRQIHG--AYYYRVPDGLESAWDGKKQFRLGKT-----LPEAYKAWADRLATLDDAK-- 65

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
                T+  L+  Y       +  + ++        ++    G      I  +H+   ++
Sbjct: 66  -----TIGELLDRYALEV-VPNKEITTQAHNAVAIKRLRAVLGAVPLTSIKPRHVYQYID 119

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS---VERPKRKTEGIRPWTKEDMQQ 181
            R    ++A + +  +   +  AV   Y+  +P      +E  K +T  I  W   +   
Sbjct: 120 KRSAK-TAAKREIEVLSHAYTKAVEWGYLDRHPFKREVRLEGQKPRTRYIEDWEIVECLS 178

Query: 182 FKSFWSEGS--QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK----TGTIITV 235
            ++    GS    +      L +GLR  D  R  +  L+++   +   K    TG  +  
Sbjct: 179 LEARRKSGSVLAIQAYIRIKLLTGLRRGDLLRLTMSDLKDDGIHVTPGKTENTTGKRLIY 238

Query: 236 ELPDGFMKLLAMTPIGKET-----FFINNDKQKMN------ATQFSIWFKAKATK-AGVN 283
           E  D     +AM    +        F N   +         A  +   ++    +  G  
Sbjct: 239 EWTDELRGAVAMAKSARPVTIAPWLFCNRRGECYFNEETGRAGGWDTMWRNFMERVLGET 298

Query: 284 K-----SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIR 330
           K     + H +R   A+ +     T     A          E  Y +  +R++
Sbjct: 299 KVKEHFTEHDMRAKCASDAE----TLEHAQALLAHADGKVTERIYRRKPERVK 347


>gi|303237560|ref|ZP_07324124.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
 gi|302482279|gb|EFL45310.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
          Length = 410

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 46/272 (16%), Positives = 92/272 (33%), Gaps = 31/272 (11%)

Query: 94  SFESYF-DQIIRKSGDFD--YRKITTKHIRSGVESRKHTPSSAIQF----LTSMRVLFKW 146
               +F + +I K G  D    + T   ++            A       L +++ +  +
Sbjct: 138 VLRRHFAEFLIYKYGKKDIGLAEFTPSVVQDFELYLSTAAGCAYNTSVKKLKALKTVTIY 197

Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ---PRLAFEFLLYSG 203
           A ++ Y+  +P L+  R   +       T E++ +  +   +  +    R  F F  ++G
Sbjct: 198 AQKRGYLLHDPFLN-HRFHLEPVNRGFLTDEEIMKIANKELDIHRLELVRDVFIFSCFTG 256

Query: 204 LRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDGFMKLLAMTP-----IGKET 254
           L   D       ++           K QKT     V L D    ++A         GK  
Sbjct: 257 LAYIDVSNLTPDNIVTLDDKQWIMTKRQKTSVETNVLLLDIPKSIIAKYSHKTYRDGKLF 316

Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYG 312
             + N K        + + K  A   G+ K  + H  R   AT+S   G     +    G
Sbjct: 317 PILTNQKT-------NAYLKEIADICGIKKNLTFHLARHTFATMSLSKGVPMESVSKMLG 369

Query: 313 WKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
              +   + Y +  ++      +  +++  +D
Sbjct: 370 HTNIKTTQIYARITNKK--IEHDMEQLAGKLD 399


>gi|237718467|ref|ZP_04548948.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|229452174|gb|EEO57965.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
          Length = 400

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/270 (14%), Positives = 94/270 (34%), Gaps = 26/270 (9%)

Query: 89  VNSRISFESYF----DQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF---LTSMR 141
             +  ++E+        + +   DF +  ++++ +    ++              L +M+
Sbjct: 126 EGTAKAYEATLHSMQKHLCKT--DFPFAHLSSRLVIKYRDTLLEAGVGKNTIGFYLHNMK 183

Query: 142 VLFK-WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-WSEGSQ---PRLAF 196
            +++   +    V  +P  ++ R + +    +    + ++   +   S G+     R  F
Sbjct: 184 AVYRRGCLELNLVFPSPFCNI-RIRSEKTVKQSLPMKQVKSLANLSLSVGTPECLARDVF 242

Query: 197 EFLLYS-GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM-TPIGKET 254
            F +Y+ G+   D        +   +   + QKTG ++ + +      LL        + 
Sbjct: 243 MFSIYTRGMSFVDIAFLKKSDIFPGVIRYRRQKTGQLLEIGINRQIQSLLERYGDTSGDY 302

Query: 255 FFI---------NNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAH 305
            F          +  K+  N  ++++   ++     +    H  R   AT++ + G   H
Sbjct: 303 LFPLVDESETPYSGYKKAYNKIRYTLKKISERIDINIPLRLHAARHCWATMARENGTPLH 362

Query: 306 ELMATYGWKTVDQAETYTKGADRIRLGIKN 335
            +    G  +      Y K  DR  L   N
Sbjct: 363 TISECLGHSSEKVTRIYLKELDRSVLDEVN 392


>gi|158334464|ref|YP_001515636.1| phage integrase, putative [Acaryochloris marina MBIC11017]
 gi|158304705|gb|ABW26322.1| phage integrase, putative [Acaryochloris marina MBIC11017]
          Length = 394

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 55/324 (16%), Positives = 98/324 (30%), Gaps = 46/324 (14%)

Query: 37  YPHESTFIPAY--MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRIS 94
              +   +  Y   SALT +  K   I  P+    TL  L S+Y            S  +
Sbjct: 65  GEFDPDNLEKYKVQSALT-TPEKVVNITEPKL---TLTDLWSQYLNYKA----PQASPKT 116

Query: 95  FESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA 154
               ++ +    G      +           +  T S A + L  +    KWA++   + 
Sbjct: 117 LNGTYEPVTAHLGRCSTDGLEDALKFRLELLQATTQSQARRTLMQLSAACKWAMKHSLIE 176

Query: 155 INPCLSVERPKRKTEGIRP--WTKED----MQQFKSFWSEG---SQPRLAFEFLLYSGLR 205
            NP   + +    T    P  +T E+    +  F+    +G          +FL +SG R
Sbjct: 177 ANPFDGMYKELEATTPPPPIAFTVEERDRIITAFEEHRGKGINYQHYAPFVKFLFWSGCR 236

Query: 206 CSDSCRAGVQ----------------HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT- 248
             ++     +                 +   +   +  KTG            KLL    
Sbjct: 237 PCEAIGLRWESVNKTCDRIHFHESIVEVSGKLVRREETKTGVQRWFSCTPKLQKLLYSIR 296

Query: 249 ---PIGKETFFINNDKQKMNATQFS--IWFKAKA-----TKAGVNKSAHGVRKFSATISA 298
              P      F ++    +  + F    W K         K G+  + +  R    T+ A
Sbjct: 297 PENPQPDALVFPSSKGGIIRPSNFKDRAWNKILTTLNLQVKGGIKMTPYNCRDTFITLQA 356

Query: 299 DAGATAHELMATYGWKTVDQAETY 322
             G ++  +    G  +    E Y
Sbjct: 357 VHGNSSTTIARWVGNSSKVIEEKY 380


>gi|332173973|gb|AEE23227.1| integron integrase [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 321

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 47/304 (15%), Positives = 88/304 (28%), Gaps = 80/304 (26%)

Query: 91  SRISFESYFDQIIRKSG-----------DFDYRKITTKHIRSGVESRKHTPSSAIQFLT- 138
           S+ S E+Y   I                D +       H+   ++    T  SA+  L  
Sbjct: 20  SKRSIEAYLKWISSYIHFHQKKHPNLMHDKEVEAF-LSHLVLELDVAASTQKSALNALVF 78

Query: 139 ----SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
                +R    +  +  ++            R+ +     T ++++   +     +Q +L
Sbjct: 79  LYRDIIRQPLNF--KLSFIKST---------RQQKLPIVLTTDEVRNLLAV--VNAQNKL 125

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT--QKTGTIITVELPDGFMKLLAMTPIGK 252
           A   L  SGLR  +  R  VQ +  +  SI+    K G    V L D  +  L       
Sbjct: 126 AVSILYASGLRLMECMRLRVQDIDFDFKSIRVWHGKGGKHRVVTLADELIPTLQQQITVV 185

Query: 253 ETFF----------------------------------------------INNDKQKMNA 266
           + +                                                +  +  ++ 
Sbjct: 186 KQYLDADLLNPEYSGVYLPHRLRLKFKNANRSIQWQYVFASRQLSKDPEDQSLRRHHIDG 245

Query: 267 TQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +      +  A KA + K+   H +R   AT    +GA    +    G   +   + YT 
Sbjct: 246 STVQKAIRHAAKKASIPKTVTPHTLRHSFATHLLQSGADIRTVQDQLGHSDLRTTQIYTH 305

Query: 325 GADR 328
              R
Sbjct: 306 ILQR 309


>gi|300872269|gb|ADK38962.1| IntI4 [Vibrio sp. V2(2010)]
          Length = 293

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 42/288 (14%), Positives = 86/288 (29%), Gaps = 57/288 (19%)

Query: 94  SFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYV 153
           ++  +  + I          +  K +   +         A +  +       +  ++  +
Sbjct: 2   AYLHWITRYIHFHNKKHPSLMGDKEVEEFLTYLAVQGKVATKTQSLALNSLSFLYKE--I 59

Query: 154 AINP-CLSVE--RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210
              P  L +   R + + +     T++++++         + +L  + L  SGLR  +  
Sbjct: 60  LKTPLSLEIRFQRSQLERKLPVVLTRDEIRRLLDVVDP--KYQLPAKLLYGSGLRLMECI 117

Query: 211 RAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLAMTPIGKETFFINN--------- 259
           R  VQ +  +  +I+    K G   TV L       L       + ++  +         
Sbjct: 118 RLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPYLKEQIALAKRYYDRDLHQNNYGGV 177

Query: 260 -------------------------------------DKQKMNATQFSIWFKAKATKAGV 282
                                                 +  MN T      +  A +AG+
Sbjct: 178 WLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVMRRHHMNETVLQRTVRRSAQEAGI 237

Query: 283 NKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
            K+   H +R   AT   + GA    +    G   V   + YT   DR
Sbjct: 238 EKTVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHVLDR 285


>gi|237732963|ref|ZP_04563444.1| conserved hypothetical protein [Mollicutes bacterium D7]
 gi|229383953|gb|EEO34044.1| conserved hypothetical protein [Coprobacillus sp. D7]
          Length = 396

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 53/352 (15%), Positives = 98/352 (27%), Gaps = 50/352 (14%)

Query: 10  FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
           +  K     GK  Y +         L            +S        +  +        
Sbjct: 26  YTYKYVDALGKTRYVYAWK-----LLSTDRTPKGKRDDLSLREKERIIQRDLYDGIDTQG 80

Query: 70  TLKWLISEY-RKSAHWGSLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHIRSGVESRK 127
           +   L   Y +K+A   ++  N+    +     +     G      I     R      K
Sbjct: 81  SKMTLCQLYAKKNAQRPNVKQNTLNGRKYLMQALEDDILGSRSIDSIKPSDAREWAIRMK 140

Query: 128 HTP---SSAIQFLTSMRVLFKWAVRQEYVAINPC--LSVERPKRKTEGIRPWTKEDMQQF 182
                  +   +  S++  F  A+  +YV  NP      E  +  +E     ++E  Q  
Sbjct: 141 EKGFSYKTISNYKRSLKASFYMAIEDDYVRKNPFDFKLSEVIEDDSEPKVALSEEQEQAL 200

Query: 183 KSFWSEGSQPRLAFE---FLLYSGLRCSDSCRAGVQHLQ---------------NNIFSI 224
             F +  +  R  ++    LL +GLR S+ C    + L                 + + I
Sbjct: 201 LDFMAHDNVYRKYYDDVLILLKTGLRISELCGLTKKDLDFENHAISVNHQLLKDKDGYYI 260

Query: 225 KTQKTGTIIT-VELPDGFMKLLAMTPIGKET------------FFINNDKQKMNATQFSI 271
              KT + I  V + D   +        K+              F+N     ++   +  
Sbjct: 261 DEPKTKSGIRKVPMSDETEQAFQRVLKRKQKSNIKEIDGYRNFLFLNTSGSPVHKQMYET 320

Query: 272 WFKAKAT------KAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTV 316
             K          +  + K + H +R    T  A        L    G   +
Sbjct: 321 ILKRMVQKYNKTHEVKLPKITPHTLRHTFCTRLAQKNMNPKNLQYIMGHSNI 372


>gi|228941666|ref|ZP_04104213.1| Integrase/recombinase [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228974593|ref|ZP_04135159.1| Integrase/recombinase [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228981188|ref|ZP_04141488.1| Integrase/recombinase [Bacillus thuringiensis Bt407]
 gi|228778388|gb|EEM26655.1| Integrase/recombinase [Bacillus thuringiensis Bt407]
 gi|228784996|gb|EEM33009.1| Integrase/recombinase [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228817878|gb|EEM63956.1| Integrase/recombinase [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|326942274|gb|AEA18170.1| site-specific tyrosine recombinase XerD [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 332

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 36/279 (12%), Positives = 77/279 (27%), Gaps = 25/279 (8%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           T+   +    +      L   +   +  +     + +      ++   HI   + S   +
Sbjct: 41  TIDKALEIIVRQMKATGLRERTINDYYIHVSHFAKITDTHYIEELNVNHIYEWLSSMNVS 100

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-- 187
             + +  L  ++          ++ IN   +V+  K  T      T  ++    S     
Sbjct: 101 NQTKLTRLKCLKAFLGRCHDNGWIDINFWRNVK-IKVDTPVKEGATDREINILLSVLDLT 159

Query: 188 --EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ--KTGTIITVELPDGF 241
                +   A   +  +G+R     +   +H+     + S+     K    I +   D  
Sbjct: 160 RFLDLRDATAILLMYQTGIRVGTLAQLEHKHVDLEAKVLSVDGGIIKNHESIYLPFDDAL 219

Query: 242 MKLLAMT-----------PIGKETFFINNDKQ----KMNATQFSIWFKAKATKAGV-NKS 285
            +LL +                   FI                S      A + G+ N +
Sbjct: 220 ARLLDVLMKQNEIIRREYQAKNGYLFITKSGGSVLTSPTNNIISKRMTKHAKEYGLKNIN 279

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            H +R+  A      GA    +    G   +     Y  
Sbjct: 280 PHAIRRGFAKNLLKKGANVALISKALGHSDISVTTRYLH 318


>gi|13959816|gb|AAK49012.1| USC7-1p [Myxococcus xanthus]
          Length = 168

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 46/150 (30%), Gaps = 21/150 (14%)

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLL-------- 245
             E +  +GLR S+        +      ++ T K      V L +     L        
Sbjct: 1   MLELMYAAGLRVSELVLLPATAVNLRQGVLRVTGKGSKERLVPLGEESQHWLERYLQQSR 60

Query: 246 ---------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFS 293
                         G+   FI      +    F    K  A  AG++    S HG+R   
Sbjct: 61  PQLVGKGRVHALADGQTPLFIEPTLHALTRQAFWHLVKRHAQVAGIDPARISPHGLRHSF 120

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYT 323
           AT   + GA    L    G  ++   + YT
Sbjct: 121 ATHLLNRGADLRALQMLLGHSSLSTTQIYT 150


>gi|16766051|ref|NP_461666.1| phage tail-like protein [Enterobacteria phage Fels-2]
 gi|169936064|ref|YP_001718763.1| P2 Int-like protein [Enterobacteria phage Fels-2]
 gi|197250527|ref|YP_002147666.1| phage integrase [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
 gi|200388896|ref|ZP_03215508.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|16421285|gb|AAL21625.1| Fels-2 prophage protein [Enterobacteria phage Fels-2]
 gi|197214230|gb|ACH51627.1| phage integrase [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
 gi|199605994|gb|EDZ04539.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|312913759|dbj|BAJ37733.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. T000240]
 gi|321223527|gb|EFX48592.1| Phage integrase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. TN061786]
          Length = 341

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/268 (14%), Positives = 73/268 (27%), Gaps = 37/268 (13%)

Query: 83  HWGSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGVESRKH----------- 128
            W SL   +    +    +   I    GD    ++T        E+R             
Sbjct: 67  QWHSLYGQTLADPKRLMAKLSIICNGLGDPIASELTAGDFTKYREARLKGEVKNEDGVLM 126

Query: 129 ---TPSSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
               P +      ++  +F    +   + A NP   +   K     +     E++++   
Sbjct: 127 SPVKPRTVNLEQRNLSSVFGTLKKLGHWSAPNPLAGLPTFKIAEGELAFLAPEEIKRLLD 186

Query: 185 FWSEGSQPRLAF--EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
             ++   P L    +  L +G R S++       L     +    K     TV +     
Sbjct: 187 ACADSQSPSLLMIAKVCLATGARWSEAENLQGHQLSKYRITYTKTKGKKNRTVPISQDLY 246

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV----NKSAHGVRKFSATISA 298
             L             N  +          F+    +AG+     +  H +R   A+   
Sbjct: 247 DELPK-----------NRGKLFTP--CRKAFERAVKRAGIELPEGQCTHVLRHTFASHFM 293

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGA 326
             G     L    G   +     Y   A
Sbjct: 294 MNGGNILVLRDILGHADIKMTMVYAHFA 321


>gi|58040742|ref|YP_192706.1| prophage integrase [Gluconobacter oxydans 621H]
 gi|58003156|gb|AAW62050.1| Prophage integrase [Gluconobacter oxydans 621H]
          Length = 364

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 54/358 (15%), Positives = 110/358 (30%), Gaps = 59/358 (16%)

Query: 13  KERTRHGKIIYYFR--KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
           K   RHG    Y R   G           +      Y +       K       ++   T
Sbjct: 4   KIVNRHGTDRLYIRGTIGGQSISESTGTTDPARAEEYRAKREAELWKESVYG--KRAVVT 61

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG-----VES 125
               +  Y + A     +  ++     +  ++++  G      I    +         + 
Sbjct: 62  FAHAVGAYLEDAP---RSETTK----FHLRRLLQHFGTTRLMDIAQPQVDDAYRAILRDG 114

Query: 126 RKHTPSSAIQ-FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
              +P++ ++  LT +R + ++A  + +       + + PKRKT  +RP   +++ +   
Sbjct: 115 VNASPATKMRGVLTPLRAILEFAAIRRWCDRPAFATPKIPKRKTNYLRP---DEVDRLIQ 171

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243
             +   +P + F  L+ +G R S++     + +      ++  QK G    V+LP   ++
Sbjct: 172 AATPHLRPLIIF--LVGTGARLSEALELEWRDVDLRGKRAVVWQKQGNERRVDLPPCVIR 229

Query: 244 LLAMTPIGKETFFINNDKQK---------------MNATQFSIWFKAKATKAGVNK---- 284
            L          F    ++                +   Q    +     KAG+      
Sbjct: 230 SLLTLGHRDGPVFRPRIRRPDASGVINDGYASKGRLAGGQIKSAWSVACRKAGLTGRTRK 289

Query: 285 -----------------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
                            + H +R   AT           L    GW T+     Y K 
Sbjct: 290 WQPKGSDTIKTAFVPDITPHDLRHTWATWHYCLHRDILRLKDDGGWATLSIVTRYAKK 347


>gi|222097940|ref|YP_002531997.1| integrase/recombinase [Bacillus cereus Q1]
 gi|221241998|gb|ACM14708.1| integrase/recombinase [Bacillus cereus Q1]
          Length = 332

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/279 (12%), Positives = 79/279 (28%), Gaps = 25/279 (8%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           T+   +    +      L   +   +  +     + +      ++   HI   + S   +
Sbjct: 41  TIDKALEIIVRQMKATGLRERTINDYYIHVSHFAKITDTHYIEELNVNHIYEWLSSMNVS 100

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-- 187
             + +  L  ++          ++ IN   +V+  K  T      T  ++    S     
Sbjct: 101 NQTKLTRLKCLKAFLGRCHDNGWIDINFWRNVK-IKVDTPVKEGATDREINILLSVLDLT 159

Query: 188 --EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ----KTGTIITVELPDGF 241
                +   A   +  +G+R     +   +H+  +   +       K    I +   D  
Sbjct: 160 RFLDLRDATAILLMYQTGIRVGTLAQLEHKHVDLDAKVLNVDGGIIKNHESIYLPFDDVL 219

Query: 242 MKLLAMT-----------PIGKETFFINNDKQ----KMNATQFSIWFKAKATKAGV-NKS 285
            +L+++             +  +  FI                S      A + G+ N +
Sbjct: 220 ARLISVLMKQNEIIRREYNVKNDYLFITKSGGSVLTSPTNNIISKRMTKHAKEYGLKNIN 279

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            H +R+  A      GA    +    G   +     Y  
Sbjct: 280 PHAIRRGFAKNLLKKGANVALISKALGHSDISVTTRYLH 318


>gi|206558485|ref|YP_002229245.1| prophage integrase [Burkholderia cenocepacia J2315]
 gi|198034522|emb|CAR50387.1| prophage integrase [Burkholderia cenocepacia J2315]
          Length = 358

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 81/226 (35%), Gaps = 16/226 (7%)

Query: 109 FDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168
            + R + T+H     + R  + ++  + +  ++ +   AV  E++A  P    +R K  +
Sbjct: 115 REPRTVRTRHGVVATD-RPVSDATVRRVIGVLKAVLNAAVEWEWLARAPVT--KRAKVVS 171

Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSI 224
           + IR  T  + ++  +           F   L +GLR ++        +           
Sbjct: 172 KRIRWLTPAEAERLLAELPAHLADMARF--SLETGLRRANVTGLQWSQVDLARRVAWIHP 229

Query: 225 KTQKTGTIITVELPDGFMKLLAM------TPIGKETFFINNDKQKMNATQFSIWFKAKAT 278
              K    ITV L D  + +L         P   ++ F+    + +  T  + W KA   
Sbjct: 230 DQAKARKAITVPLSDTAIAVLQRQRANPRAPACADSVFV-YRGKPVYQTATAAWAKALRR 288

Query: 279 KAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
               +   H +R   A+     G     L    GW+T++  + Y  
Sbjct: 289 AGLHDFRWHDLRHTWASWHVQRGTPLQVLKELGGWETMEMVQRYAH 334


>gi|91224291|ref|ZP_01259553.1| putative integrase [Vibrio alginolyticus 12G01]
 gi|91190633|gb|EAS76900.1| putative integrase [Vibrio alginolyticus 12G01]
          Length = 312

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 45/246 (18%), Positives = 83/246 (33%), Gaps = 48/246 (19%)

Query: 126 RKHTPSSA---IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           R   P SA      +  +R  F  AV+ +++  NP L VE     +    P   E+  Q 
Sbjct: 47  RNGRPRSAKTINNMIKLLRRCFDLAVKSKFIDDNPFLHVELLSGGSGEPDPLELEEFHQL 106

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-------------KTQKT 229
               +   Q R  F   +Y+G+R  + C    + +  +  +I               +  
Sbjct: 107 IESTT-NLQQRNMFTLAIYTGMRTGELCALAWEDVDLDKGTIEVTRNVTIERKFTTPKNK 165

Query: 230 GTIITVELPDGF-------MKLLAMTPI--------GKETF--------FI--NNDKQKM 264
            +  T+ L +          +L   +P+        G  TF        FI    + Q  
Sbjct: 166 KSERTIHLLEPALLALKSQRELTMFSPVRDIFVEVKGSNTFRQESVRFVFIPERRNGQAP 225

Query: 265 NA----TQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
           +     T ++  +     +AG+ ++ ++  R   A      GA    +    G K+    
Sbjct: 226 SETYKTTTYNRLWSRALKRAGIRHRCSYQSRHTYACWLITKGANLSFIAEQMGHKSTMML 285

Query: 320 ET-YTK 324
           E  Y +
Sbjct: 286 ERVYGR 291


>gi|326204540|ref|ZP_08194397.1| integrase family protein [Clostridium papyrosolvens DSM 2782]
 gi|325985333|gb|EGD46172.1| integrase family protein [Clostridium papyrosolvens DSM 2782]
          Length = 279

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/262 (12%), Positives = 88/262 (33%), Gaps = 19/262 (7%)

Query: 85  GSLAVNSRISF----ESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH----TPSSAIQF 136
              +VN+   +    ++Y +   +  G  ++ +I  ++I       K+       +    
Sbjct: 12  HGKSVNTVNGYCRNVKAYLEWFSQTYG-LEFSRIHHENILEYKSYLKNILQLDAKTINNK 70

Query: 137 LTSMRVLFKWAVRQEYVAINPC---LSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
           L+++    ++ +    +  N         + +          KED+++F+    E    +
Sbjct: 71  LSALAKFNEFLIHNG-IQDNTAVTKQDFIKVQLNYASPAKIQKEDVKKFRQLILEHENKK 129

Query: 194 --LAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLA--M 247
                  L  + LR S++    +  +        ++  K      V + D    +L   +
Sbjct: 130 YYTVISVLEMTALRISEALSLKISDVNLTARELRVRNGKGNKQRIVYINDQLADILKDYI 189

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHEL 307
                +++     K  +N T  +  F     K   + + H +R    + + +   T  E+
Sbjct: 190 KLYQPDSWLFPGRKGPLNRTVVNKVFAKYKNKTSDSLTPHQLRHHWCSNALENDFTVAEI 249

Query: 308 MATYGWKTVDQAETYTKGADRI 329
            +  G   +     YT  + + 
Sbjct: 250 ASIAGHSNIHTILLYTNPSKQK 271


>gi|315167303|gb|EFU11320.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX1341]
          Length = 377

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 56/314 (17%), Positives = 115/314 (36%), Gaps = 42/314 (13%)

Query: 50  ALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGS-LAVNSRISFESYFD-QIIRKSG 107
           AL+    + +     ++  +T K +   +   A + + +   +    E  F   I+ + G
Sbjct: 48  ALSRLELEVDSKGFVKQNYSTFKDVYELWY--AQYVNTVKPITAGHTERMFRLHILPEFG 105

Query: 108 DFDYRKITTKHIRSGVESRKHTPSSAIQFLTSM-RVLFKWAVRQEYVAINPCLSVERPKR 166
           +    K+T    +  V        SA   L S+ + +  +AV Q+ + INP   V  PK+
Sbjct: 106 NIKINKLTKLMCQKAVNKWS-KEYSAFYLLKSITQKMLHYAVAQDIIDINPMQYVVMPKK 164

Query: 167 ----KTEGIRPWTKEDMQQFKSFWSE--GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220
               +T+  +     +++ F +   E    Q  L F  L ++G+R  +      + +  +
Sbjct: 165 DKTNETKKKQFLELSELKDFLAEAKETLNFQDYLIFRVLAFTGIRKGELYALTWEDINIS 224

Query: 221 IFSIKTQKT----GTIITVELPDGFMKL----LAMTPIGKETFFINNDKQKMNATQF--- 269
              +   KT    G    +  P          L  T + +   +  + KQ++    F   
Sbjct: 225 YKQLTVNKTLTRIGKEYIISTPKTKASNRTIGLDDTTVSELIIWKKHQKQELLKYGFKTK 284

Query: 270 ----SIWFKAK--------------ATKAGVNKSAHGVRKFSATISADAGATAHELMATY 311
                + F  K              +++   + S H  R   A++  ++GAT  ++    
Sbjct: 285 SNDKQLIFHRKNNTLHYPEYINFLLSSEMKTSLSPHSFRHTHASLLFESGATIKDVQKRL 344

Query: 312 GWKTVDQA-ETYTK 324
           G   V+   + YT 
Sbjct: 345 GHTNVNTTMDIYTH 358


>gi|307691640|ref|ZP_07633877.1| hypothetical protein RbacD_01570 [Ruminococcaceae bacterium D16]
          Length = 357

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 53/308 (17%), Positives = 94/308 (30%), Gaps = 43/308 (13%)

Query: 52  TGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFD 110
             +  + +   +      T K  +  Y        L  N+  + +     +++   G   
Sbjct: 39  AQAWEREQLNKTSADLDMTFKSFVDLYTADMK-TRLKENTWATKDHIIRTKLLPYFGRLK 97

Query: 111 YRKITTKHIRSGVESR------KHTPSSAIQFLTS---MRVLFKWAVRQEYVAINPCLSV 161
              IT + I +              P S +   T    +  +F  AVR   +  NPC   
Sbjct: 98  MCNITAQQIITWQNEMLNHKDENGKPYSPVYLKTVHNQLSAIFNHAVRYYNLRENPCKKA 157

Query: 162 E-RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-- 218
               K+K   +  WTKE   +F     +      AFE L + G+R  +            
Sbjct: 158 GSMGKKKKREMMFWTKEQYLKFAEVMMDKPLSFYAFEMLYWCGIREGELLALTPADFDFE 217

Query: 219 -------------NNIFSIKTQKT-GTIITVELPDGFMK-------LLAMTPIGKETFFI 257
                        N    I T KT  +   + +P    +       +L         F I
Sbjct: 218 KRTVTINKSYQRLNGQDLITTPKTEKSNRVITMPQFLAEEIQDYIKMLYGIGPDDRMFTI 277

Query: 258 NNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTV 316
                    +         A +AGV +   H +R  + ++  D G +A  +    G +++
Sbjct: 278 TK-------SYLQREMDRGAKEAGVPRIRIHDIRHSAVSLLIDMGFSATAIADRVGHESI 330

Query: 317 DQAETYTK 324
           D    Y  
Sbjct: 331 DITYNYAH 338


>gi|113473885|ref|YP_718148.1| putative integrase [Sphingomonas sp. KA1]
 gi|112821565|dbj|BAF03436.1| putative integrase [Sphingomonas sp. KA1]
          Length = 334

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 95/302 (31%), Gaps = 44/302 (14%)

Query: 75  ISEYRKS--AHWGSLAVNSRISFESYF--------DQIIRKSGDFDYRKITTKHIRSGVE 124
           ++ Y +       +++ ++  ++ + F        D++ R+  D +   +    I + ++
Sbjct: 8   LTAYLREHLPRERAVSPHTVKTYANCFVLLVRFAADRLKRRPTDLEVEDLGIDLILAFLD 67

Query: 125 ----SRKHTPSSAIQFLTSMRVLFKW-------AVRQEYVAINPCLSVERPKRKTEGIRP 173
                R  +  +    L ++R  F++        + Q         S+   K     I  
Sbjct: 68  HIEAQRGSSVRTRNGRLAAIRSFFRYIEYRVPVCLDQALR----VRSIPSKKTDKALIDY 123

Query: 174 WTKEDMQQFKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF---SIKT 226
             + +++            G++ R         GLR S+     ++   +       I  
Sbjct: 124 LDRAEIKALLDAPDPRTRLGTRDRAMLHLAYAGGLRVSELVTLQLRDFPDRSLSTVHIMG 183

Query: 227 QKTGTIITVELPD---GFMKLLAMTPIGKET-FFINNDKQKMNATQFSIWFKAKATKA-- 280
           +     +     +        LA+ P  +    F+N + Q M    F+         A  
Sbjct: 184 KGRRERVLPLWKETQFALRAWLAIRPDAEVAEIFLNANGQPMTRDGFAFRLAEHVKTAAE 243

Query: 281 ------GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIK 334
                 G   + H +R   A  +  A     ++    G  ++   E Y +     +L I 
Sbjct: 244 KQPSILGKRVTPHVLRHSCAMHTLAATGDIRKVALWLGHASIQSTEAYLRADPDEKLQIL 303

Query: 335 NS 336
            +
Sbjct: 304 AA 305


>gi|87302036|ref|ZP_01084870.1| Integron integrase; Phage integrase; Phage integrase N-terminal
           SAM-like domain [Synechococcus sp. WH 5701]
 gi|87283604|gb|EAQ75559.1| Integron integrase; Phage integrase; Phage integrase N-terminal
           SAM-like domain [Synechococcus sp. WH 5701]
          Length = 323

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 47/308 (15%), Positives = 92/308 (29%), Gaps = 58/308 (18%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH----T 129
           L+  +R+       A  +  S+  +  + +R  G    R++  + I + +         +
Sbjct: 9   LMDRFREEMQVRHYARRTITSYAQWVKRFLRFHGMRHPREMGEEEINAFLSHLATEGQVS 68

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            S+  Q L+++  L++  +  +   +     V R +++       T  +++   S     
Sbjct: 69  ASTQNQALSALLFLYRTVLSGDVGNL---EGVVRARQRKRLPVVLTVAEVKAVLSQLE-- 123

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELP----DGFMK 243
              +L  + L  SGLR  ++ R  V+ +       ++++ K        LP    +    
Sbjct: 124 GVEQLVAQLLYGSGLRLMEALRLRVKDVDCQARQLTVRSGKGDKDRVTMLPTSVVEPVQA 183

Query: 244 LLAMTPIGKETFFINNDKQKM----------NATQFSIW--------------------- 272
            L                + M           A     W                     
Sbjct: 184 YLLAVREIHRADLAAGWGRVMLPLALGRKYPTAASEWAWQWVFPQAHRWHDRNNRTEGRH 243

Query: 273 ----------FKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
                      K     AGV+K A  H  R   AT   + G     +    G   V    
Sbjct: 244 HIDPSLIQKAVKRAVLSAGVSKQASCHTFRHSFATHLLERGHDIRTIQELLGHSDVKTTM 303

Query: 321 TYTKGADR 328
            YT   +R
Sbjct: 304 IYTHVLNR 311


>gi|56807895|ref|ZP_00365725.1| COG0582: Integrase [Streptococcus pyogenes M49 591]
 gi|209558929|ref|YP_002285401.1| Integrase [Streptococcus phage NZ131.1]
 gi|209540130|gb|ACI60706.1| Integrase [Streptococcus phage NZ131.1]
          Length = 381

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 43/304 (14%), Positives = 99/304 (32%), Gaps = 39/304 (12%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           L   + +S            +    ++ +I   G     K+T  +I+  +    +     
Sbjct: 73  LAELWLESYQLTVKPQTFIATKRMLYNHLIPIFGTMKVDKLTVSYIQRFINDLLNQLVHY 132

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSV---ERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
               +  R + ++ V  + +  NP   V   + PK++ + I+    ED++   ++  + +
Sbjct: 133 GVVHSINRRVLQYGVSLQLLPFNPARDVMLPKVPKKENKAIKFIAPEDLKALMAYMEKLA 192

Query: 191 Q-------PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL-PDGFM 242
                     + +  LL +G R  +        +     +I   K  + +   +      
Sbjct: 193 NKKFSYFFDYVLYSVLLATGCRFGEVVALEWSDIDLENGTISITKNYSRLLKLIGTPKSK 252

Query: 243 KLLAMTPIGKETF------------FINNDKQKMNATQFSIWFKAKATKA---------- 280
             + +  I K+T                    +++A  FS   K     A          
Sbjct: 253 AGVRVISIDKKTINLLRLYKNRQRQLFIETGARVSAVVFSTPLKEYQNMATRQESLDRRI 312

Query: 281 ---GVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK-GADRIRLGIK 334
              G+ + + H  R   A++  +AG +  EL    G  T+    + Y     D+ +  + 
Sbjct: 313 TEVGIPRFTFHAFRHTHASLLLNAGISYKELQYRLGHATLAMTMDIYGHLSMDKEKEAVS 372

Query: 335 NSRR 338
              +
Sbjct: 373 YFEK 376


>gi|184154936|ref|YP_001843276.1| integrase [Lactobacillus fermentum IFO 3956]
 gi|183226280|dbj|BAG26796.1| integrase [Lactobacillus fermentum IFO 3956]
 gi|299782969|gb|ADJ40967.1| Integrase [Lactobacillus fermentum CECT 5716]
          Length = 373

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 37/294 (12%), Positives = 88/294 (29%), Gaps = 29/294 (9%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQ 135
           + ++      +  ++  +    + +    G      I     +  +    + H+ ++A +
Sbjct: 68  WYETYKHHQSSRATQDFYRYCINVVNDYFGRRKISTIDRATYQRFLNDFGKSHSKNTASK 127

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLS--VERPKRKTEGIRPWTKEDMQQFKSF----WSEG 189
               +RV  K AV    +  +      +   K +T  +     E++ +  +      S G
Sbjct: 128 MNAYVRVAVKNAVLDNVIPADFTEGTTIVWDKTRTRQVEYLNMEEINRLVALVKESLSPG 187

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK--------------TGTIITV 235
              R      +Y+G+R S+        L     +I+  K                +   +
Sbjct: 188 FPVRYMILTAVYTGMRLSEIAALTWDDLDLPFKTIEISKSWDFKGRTFKDTKTKSSRRII 247

Query: 236 ELPDGFMKLLAMTPI-GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRK 291
            +    +  L      G +  F   D     ++  +   +    K  ++K     H +R 
Sbjct: 248 RVNQELLDCLVELKANGHDLVFARKDGSVCGSSSANRTLRLFLDKLNLDKPGFHFHSLRH 307

Query: 292 FSATISADAGATAHELMATYGWKTVDQAE-TYTKGAD--RIRLGIKNSRRISSV 342
                    G   + +    G   +      Y    D  + R   +  R + S+
Sbjct: 308 SHVAYLLANGVPLYAISKRLGHSNMTTTANRYAYLIDEFKARSDDQIERALVSL 361


>gi|168335500|ref|ZP_02693581.1| integrase family protein [Epulopiscium sp. 'N.t. morphotype B']
          Length = 351

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/260 (15%), Positives = 86/260 (33%), Gaps = 34/260 (13%)

Query: 111 YRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170
                   I       K++     + L++++ +FK+  ++  +  NP   +E PKR  + 
Sbjct: 92  LNSYEKIDIEGNKNIYKNSNRGKARKLSALKTMFKYFYKRGIINNNPVGVIEMPKRYEKT 151

Query: 171 IRPWTKEDMQQFKSFWSEGS---------------QPRLAFEFLLYSGLRCSDSCRAGVQ 215
           I     ++++        G                +       LL +G+R S+     + 
Sbjct: 152 IIKLDADEIEDLIFVVESGEQLSPAQKRYHTKTKIRDVAIICLLLGTGIRVSECVGLNIN 211

Query: 216 HLQNNIFSIK-TQKTGTIITV----ELPDGFMKLLAMTPIG-----KETFFINNDKQKMN 265
            +      IK T+K G    +    E+  G      +          E  F++   ++++
Sbjct: 212 DVDFKYNGIKITRKGGNESIIYFSKEVEQGLKNYYEIRKEKSSKDLDEPLFLSLQNRRIS 271

Query: 266 ATQFSIWFKAKATKAGV-----NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
                +  K     AG+       + H +R    T   +     + +    G K V+  +
Sbjct: 272 TRMVEVLVKKY---AGLITKLKTITPHRLRTTYGTRLYEETGDIYLVADILGHKDVNTTK 328

Query: 321 T-YTKGADRIRLGIKNSRRI 339
             Y    D+ R    N  ++
Sbjct: 329 KYYVNMDDKKRKNAANIVKL 348


>gi|160891067|ref|ZP_02072070.1| hypothetical protein BACUNI_03514 [Bacteroides uniformis ATCC 8492]
 gi|156859288|gb|EDO52719.1| hypothetical protein BACUNI_03514 [Bacteroides uniformis ATCC 8492]
          Length = 421

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 42/216 (19%), Positives = 74/216 (34%), Gaps = 21/216 (9%)

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
              ++   +SA+ F+ ++R +   A+  E++  +P    E  K +       TKE++   
Sbjct: 175 RIDKQLKINSAMVFVRNLRAMIFRAIDNEWLVKDPFRRYEY-KNEETTREILTKEEIHLL 233

Query: 183 KSFWSEGSQPRLAFEFLL---YSGLRCSDSCRAGVQHL-----QNNIFSIKTQKTGTIIT 234
                      L  +  L   ++GL   D      +++           I  QKTGT   
Sbjct: 234 METPITRKHMGLVRDLYLFCCFTGLAFIDLYNLKEENIKTFFDDGEWIVIHRQKTGTEAD 293

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKM---NATQFSIWFKAKATKAGVNK--SAHGV 289
           ++L D + K +     G     +  D +              K    K G+ K  S H  
Sbjct: 294 IKLLD-YPKQIMEKHRG-----LCKDGRVFPVPPYRSCLRSLKRLGKKCGITKPLSWHVS 347

Query: 290 RKFSATIS-ADAGATAHELMATYGWKTVDQAETYTK 324
           R   AT      G     + +  G K +   + Y K
Sbjct: 348 RHSFATSVCLSNGVPIETVSSMLGHKDIKTTQVYAK 383


>gi|255008732|ref|ZP_05280858.1| putative integrase [Bacteroides fragilis 3_1_12]
 gi|313146469|ref|ZP_07808662.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313135236|gb|EFR52596.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 400

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 42/274 (15%), Positives = 93/274 (33%), Gaps = 34/274 (12%)

Query: 89  VNSRISFESYF----DQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF---LTSMR 141
             +  ++E+        + +   DF +  ++++ +    ++              L +M+
Sbjct: 126 EGTAKAYEATLHSMQKHLCKT--DFPFADLSSRLVIKYRDALLEAGVGKNTIGFYLHNMK 183

Query: 142 VLFKWAVRQEYVAIN-----PCLSVERPKRKTEGIRPWTKEDMQQFKSF-WSEGSQ---P 192
            ++    R+  + +N     P  ++ R + +    +    + ++   +   S G+     
Sbjct: 184 AVY----RRGCLELNLAFPSPFCNI-RIRSEKTVKQSLPMKQVKSLANLSLSVGTPECLA 238

Query: 193 RLAFEFLLYS-GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM-TPI 250
           R  F F +Y+ G+   D        +   +   + QKTG ++ + +      LL      
Sbjct: 239 RDIFMFSIYTRGMSFVDIALLKKSDVFPGVIRYRRQKTGQLLEIGINRQIQSLLERYGDT 298

Query: 251 GKETFFINND-------KQKMNATQFSIWFKAKATKAG--VNKSAHGVRKFSATISADAG 301
           G +  F   D         K    +     K  + + G  +    H  R   AT++ + G
Sbjct: 299 GGDYLFPMVDELEAPYSGYKKAYNKIRYALKKVSRRIGMNIPLRLHAARHCWATMAHENG 358

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335
              H +    G  +      Y K  DR  L   N
Sbjct: 359 TPLHTISECLGHSSEKVTRIYLKELDRSVLDEVN 392


>gi|330016038|ref|ZP_08308377.1| site-specific recombinase, phage integrase family [Klebsiella sp.
           MS 92-3]
 gi|328529758|gb|EGF56652.1| site-specific recombinase, phage integrase family [Klebsiella sp.
           MS 92-3]
          Length = 327

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 42/238 (17%), Positives = 81/238 (34%), Gaps = 13/238 (5%)

Query: 93  ISFESYFDQIIRKSGD---FDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVR 149
               +  D   R + D   F   K       +   S+    S+  + L S+  +F   + 
Sbjct: 80  RINRNKLDVFCRITDDPCAFQITKALISQYYAARRSQGIKASTINRDLNSISGMFTALIE 139

Query: 150 QEYVA-INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD 208
            E  +  +P    ++ K +       T+++++        G   ++A    L +G R  +
Sbjct: 140 AELFSGEHPIRGRKKLKEEVPETGYLTEDEIKHLLFKLD-GDNKKIAI-LCLSTGARWGE 197

Query: 209 SCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ 268
           + R   +H+  N  +    K+    TV +     KL+A    GK          K + + 
Sbjct: 198 AARLKAEHIIQNRVTFVKTKSNKQRTVPVSAEVAKLIA---DGKRGLLF----GKASYSD 250

Query: 269 FSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           F    +         ++ H +R   AT     G +   L    G   ++Q   Y   A
Sbjct: 251 FRQILREVKPDLPTGQATHALRHSFATHFMINGGSIITLQRILGHARIEQTMAYAHFA 308


>gi|322372756|ref|ZP_08047292.1| site-specific recombinase, phage integrase family [Streptococcus
           sp. C150]
 gi|321277798|gb|EFX54867.1| site-specific recombinase, phage integrase family [Streptococcus
           sp. C150]
          Length = 379

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 61/356 (17%), Positives = 117/356 (32%), Gaps = 47/356 (13%)

Query: 10  FVTKERTRHGKIIYYFR--------KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYI 61
            VTK+  + GK  YYF+        K +  R R     +  F      A T +  K +  
Sbjct: 8   GVTKD-DKTGKYTYYFKAGVDLATGKPYQERRRGFQTAKEAF-----EARTRALNKIQQK 61

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121
              +    T K  + E     ++ + + +     +  FD+ I+  G    R+ITT  + +
Sbjct: 62  GGIKHTQWTFKQFMEEVFMPNYYATTSPDLEHRRQVIFDEFIQYFGKKKPREITTYDVIN 121

Query: 122 GVESRKHTPSS--AIQFLTSMRVLFKWAVRQEYVAIN-PCLSVERPKRKTEGIRPWTKED 178
                    S+  A   +T +  + K A +   +    P  ++       + I  WTK++
Sbjct: 122 YRNGLLERYSNSYARNKMTLLNQVLKTAKKYGLIFHEIPTSNISPIPIIKKHIDFWTKDE 181

Query: 179 MQQFKSFWSEGSQ----PRLAFEFLLYSGLRCSDSCRAGVQHLQ---------------- 218
            Q+      + S         F    ++G+R +++     + +                 
Sbjct: 182 FQKVIQSLDKKSYFEHFVYTLFWLYYFTGMRVNEATALYWEDVDFEKKTLAINHNLQYIN 241

Query: 219 -NNIFSIKTQKT-GTIITVELPDGFMKLL-----AMTPIGKETFFINNDKQKMNATQFSI 271
             N       KT  +  T+ L D  + +L         + K  F ++ D           
Sbjct: 242 RENWVRRNKLKTESSRRTIGLDDNTLNVLKEWKERQAKVDKIPFILSLDGNPYRKRSIRD 301

Query: 272 WFKAKATKAGVNK-SAHGVRKFSATISA-DAGATAHELMATYGWKTVDQA-ETYTK 324
                + +AGV      G+R   A++   +    A  +    G   V      Y+ 
Sbjct: 302 QILKYSKRAGVKYIQPKGLRHSHASLLINEYNVNALYIQRRLGHSDVKTTLSIYSH 357


>gi|70607234|ref|YP_256104.1| integrase/recombinase XerD [Sulfolobus acidocaldarius DSM 639]
 gi|68567882|gb|AAY80811.1| integrase/recombinase XerD [Sulfolobus acidocaldarius DSM 639]
          Length = 287

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 42/216 (19%), Positives = 77/216 (35%), Gaps = 20/216 (9%)

Query: 115 TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
            +K +R   E R+   ++A  +LT++    KW  +     + P +    PK +   IR  
Sbjct: 71  RSKRVREENEKRRMKLTTAKIYLTAVLRFLKWLGK----DVKPTV----PKARKNEIRAL 122

Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTI 232
           T E++++ K+   +  +  +    L+ +G+R  +     VQ +        I+  K G  
Sbjct: 123 TYEELEKLKASAKK-LRDAVILNLLIDTGIRAKELLSIKVQDIDLERRRIIIRNTKNGES 181

Query: 233 ITVELPD----GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHG 288
             V           K +       E   IN     M         +    K G++   H 
Sbjct: 182 RIVFFTSHTGALLKKYIQKNKKEPEDKLIN-----MTYQALYRKLRRLGKKIGIDLRPHI 236

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +R   AT +   G     +    G K +   + YT 
Sbjct: 237 LRHTFATEAIRKGIPLPVVQKILGHKDIRVTQVYTH 272


>gi|331091365|ref|ZP_08340204.1| hypothetical protein HMPREF9477_00847 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330404229|gb|EGG83776.1| hypothetical protein HMPREF9477_00847 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 406

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 47/338 (13%), Positives = 100/338 (29%), Gaps = 65/338 (19%)

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISF-ESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
           K  TL  L   Y  +     LA  +R+S+  ++ +++  + G+    ++   HI++    
Sbjct: 70  KKMTLNTLFERYMAT---RELADTTRVSYVRAWENRVKDEIGNIKVVQLLPSHIKAYYAK 126

Query: 126 RKHTPSSAIQFLTSMRVLF---KWAVRQEYVAINPCLS-VERPKRKTEGIRPWTKEDMQQ 181
                 +         +L+   + AV  + +  NP  S +    +  E     T    ++
Sbjct: 127 LSKAGYAYSTIKYIHNLLYPALEMAVDDDIIRKNPAKSSISDYGKPAEEKEALTVSQQER 186

Query: 182 FKSFWS---EGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-------------------QN 219
           F  F       +        ++ +G+RC +      + +                     
Sbjct: 187 FMEFVKQSNVYNTYYPMLTIMIGTGVRCGELIGLTWKDVNIKAKTVSVDHQLIYKNLGDG 246

Query: 220 NIFSIKTQKTGTIIT-VELPDGFMKLLAMTPIGKETF---------------FINNDKQK 263
             F I T KT + I  + +     K                           F     + 
Sbjct: 247 CKFHISTPKTESGIRIIPMTQEVAKAFEEQRKINFMLAKDKSIEVDGYSGFVFTAKSGRP 306

Query: 264 MNATQFSIWF-----------------KAKATKAGVNKSAHGVRKFSATISADAGATAHE 306
           +  +  +                    + +  +  +  SAH +R  + T  A+       
Sbjct: 307 LMPSAVNSVLYNIVDAYNKTEVERAKKEHRKAELLLKFSAHVMRHTACTRMAECRMDVKV 366

Query: 307 LMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVV 343
           L    G   +D   E Y    +  R+  +   R+ S+ 
Sbjct: 367 LQYIMGHAHIDVTMEVYNHIGELARIENE-IARLDSMA 403


>gi|330832570|ref|YP_004401395.1| integrase family protein [Streptococcus suis ST3]
 gi|329306793|gb|AEB81209.1| integrase family protein [Streptococcus suis ST3]
          Length = 298

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/272 (12%), Positives = 96/272 (35%), Gaps = 29/272 (10%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLF 144
             L+ ++  +++S   Q       +++     +   + +       S+  + + S++  +
Sbjct: 17  RRLSSHTIRAYKSDLHQY------YNFGTNDIRSYLTFLNQHIKKTSTLKRKIASLKSYY 70

Query: 145 KWAVRQEYVAINPCLSVERP-KRKTEGIRPWTKEDMQQ---FKSFWSEGSQPRLAFEFLL 200
           K+   ++ ++ NP   +    K + +  +  + +D+Q+   F     E S+ + +    +
Sbjct: 71  KFLEEEKLISKNPFHQLRLHYKEEKKLPKTISLKDLQKIYCFAHQQIENSKNKHSMRKAM 130

Query: 201 ----------YSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDG---FMKLL 245
                      +GLR S+ C   + ++  +N    I  +     +     D     ++  
Sbjct: 131 RNLLLISLLLSTGLRISELCNLKLDNINLENRTIQILGKGKKERLLYIGNDETLSLLEDY 190

Query: 246 AMTPIGKETFFIN--NDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301
                   ++      +   +      +  K  +    + K  + H  R   AT+  D G
Sbjct: 191 IAHHCSHSSYLFTGVKNDDHLKEPSVRLILKNISHSLQLKKHITPHMFRHSFATMLLDNG 250

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
               ++    G   ++  + YT  +   ++ I
Sbjct: 251 VDIRQIQHLLGHSNINVTQIYTHVSQSKQVEI 282


>gi|323702858|ref|ZP_08114516.1| integrase family protein [Desulfotomaculum nigrificans DSM 574]
 gi|323532116|gb|EGB21997.1| integrase family protein [Desulfotomaculum nigrificans DSM 574]
          Length = 358

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/274 (13%), Positives = 88/274 (32%), Gaps = 29/274 (10%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKH-TPSS 132
           EYRKS     L+  +   ++  F   +      G      I    + + V      T  +
Sbjct: 61  EYRKSY---GLSRETVEEYKRNFQHFLNYLNVNGITTLNLINQHLLLNYVNQLGFFTHYT 117

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK--RKTEGIRPWTKEDMQQFKSFW---- 186
             + L+ ++   ++   Q     +    + + K  ++ +    ++KE+++   +      
Sbjct: 118 RHRNLSVIKGYLRYLYDQGLTETDFSRVIPKDKYIKQPKLPSTYSKEEVKALLAAIDRSS 177

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKL 244
            +G +           GLR SD C    +++  + N+  +  QKT   I + L     + 
Sbjct: 178 PKGKRDYAMVLITALLGLRASDVCNLTFENIQWEKNLIVLNQQKTQVRIELPLLSEVGEA 237

Query: 245 L-----AMTPIGKETFFINNDKQKMNATQFSIWFKAKA---TKAGVN------KSAHGVR 290
           +        P  +  +   +     +    S           +A ++         H +R
Sbjct: 238 IIDYLKYGRPSSELPYIFLHVTSPYDRLNRSTLHSIVCFYLRRADIHYEKQRKHGPHALR 297

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              A +  +       +    G K  +    Y +
Sbjct: 298 HSLAGVLLEKKTPLPVISEVLGHKNTESTRLYLR 331


>gi|261492582|ref|ZP_05989135.1| integrase [Mannheimia haemolytica serotype A2 str. BOVINE]
 gi|261311741|gb|EEY12891.1| integrase [Mannheimia haemolytica serotype A2 str. BOVINE]
          Length = 332

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 59/321 (18%), Positives = 105/321 (32%), Gaps = 34/321 (10%)

Query: 20  KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYR 79
           K     RK    +             AY  AL       EY  +P         LI +Y 
Sbjct: 10  KYRAQVRKKGIYKTATFSTKTEANRWAY--ALEAQIDAGEYNTTPNIL---FAELIDKYL 64

Query: 80  KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--TPSSAIQFL 137
           K           R              G+     +T +H+R     R     P S  +  
Sbjct: 65  K--EVTPTKRGKREERYRLLRIAGSSLGNIPLPALTKEHLRQWQNQRLQEVKPVSVSRER 122

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ--FKSFWSEGSQPRL- 194
            ++  LF  A+  +Y+  NP  ++E+ K      R ++ E++ +  F S +S    P L 
Sbjct: 123 ATLSALFTKAMEWDYLKENPLKTLEKIKTPPARTRRYSDEEIDKLIFVSGYSPSQPPLLM 182

Query: 195 ------AFEFLLYSGLRCSDSCRAGVQHLQNNIFS--IKTQKTGTIITVELPDGFMKLLA 246
                 A  F + + +R  +      +H+     +  +   K G   TV L    + +L 
Sbjct: 183 QQRAGAALLFAIETAMRAGEIAGLKWEHINLQARTAFLPQTKNGYSRTVPLSTKAIAILN 242

Query: 247 MT----PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISAD 299
                 P  + + F      ++ +      F+    KA +   +   H  R+ + T  + 
Sbjct: 243 QLAQLEPNKQNSVF------QLTSRSLDSNFRKLKQKANLHNADLHFHDTRREALTRLSK 296

Query: 300 AGATAHELMATYGWKTVDQAE 320
              T  EL    G + +   +
Sbjct: 297 Y-LTVMELAKVSGHRDLSILQ 316


>gi|218891236|ref|YP_002440102.1| site-specific recombinase, phage integrase family [Pseudomonas
           aeruginosa LESB58]
 gi|218771461|emb|CAW27228.1| site-specific recombinase, phage integrase family [Pseudomonas
           aeruginosa LESB58]
          Length = 341

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 41/276 (14%), Positives = 84/276 (30%), Gaps = 30/276 (10%)

Query: 15  RTRHGKII--YYF--RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
           + + GK+   YY+  R   G+R  +P   +        + L  S   +            
Sbjct: 7   KLKGGKLWVGYYYDGRGEDGKRKEIPLGTDLDLAKLEWARLDASPAPKTLRK-------- 58

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
              +   Y K       A  ++        Q+ +   +     +T + +    + R    
Sbjct: 59  WGDVFDRYEKEII-PGKAPRTQKDNLLSLTQLRKAFSEAPVEALTPQVLAQYRDKRSAKV 117

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAI-NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
             A + L+    +F  A     V   NP   V + +          + ++     + +  
Sbjct: 118 R-ANRELSLFSHIFNIAREWGIVTAENPVKGVRKNRETPRDFYA--RAEVWN-AVYGAAP 173

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL-----PDGFMKL 244
            + R A +    +  R SD        +Q+    I   KT   + + L     P    +L
Sbjct: 174 PELRDAMDLAYLTAQRPSDVLIIREADIQDGHLQIAQGKTSKKLRIMLDVDGSPTALGEL 233

Query: 245 LAMT-------PIGKETFFINNDKQKMNATQFSIWF 273
           +A          +         D ++M ++   I F
Sbjct: 234 VARLCEQRRQRGVAGPYLITTPDGRRMTSSMLRIRF 269


>gi|254473350|ref|ZP_05086747.1| phage integrase family protein, putative [Pseudovibrio sp. JE062]
 gi|211957466|gb|EEA92669.1| phage integrase family protein, putative [Pseudovibrio sp. JE062]
          Length = 335

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 51/305 (16%), Positives = 98/305 (32%), Gaps = 23/305 (7%)

Query: 50  ALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF 109
           A   +   ++ +        TL  L   Y K    G ++ N+   +++ +    +     
Sbjct: 25  AREKARKMKKSMRDGLVHIETLDELAQIYFK-RREGEVSENTLKKYKADWKNKFQDWHKI 83

Query: 110 DYRKITTKHIRS--GVESRKHTPSSAI-----------QFLTSMRVLFKWAVRQEYVAIN 156
           +   +T    R   G+ + KH P +A            + ++   +   +A    +VA N
Sbjct: 84  NPAALTVDRCRVKFGMLTEKHGPIAANSAAITSQVIINRSISQGLLPLSYANPWLHVARN 143

Query: 157 PCLSVERPKRKTEGIRPWTK-EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ 215
           P     R     E  R W   E++Q     W  G     A  +LL +G R  ++      
Sbjct: 144 PRKPRTRFMSSEELNRYWEALEEVQAGGRHWIMGVH---ALRYLLMTGRRKEEALNLRWD 200

Query: 216 HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI--GKETFFIN--NDKQKMNATQFSI 271
           +L   + S+         T  L    +  L   P   G +  F +       +N      
Sbjct: 201 YLDLELGSVSQPTKTGEKTFRLAQEVVDHLDSVPRVKGCDYVFASFGKGNTAVNEHTLYG 260

Query: 272 WFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
                  +A + +   H +R+   +    +G    ++    G   +     +    D  R
Sbjct: 261 VHSDVCKRADISDLQVHDLRQTEGSHLRLSGVDLADIADILGHADLTTTRRHYAHLDSAR 320

Query: 331 LGIKN 335
           L  K 
Sbjct: 321 LRDKA 325


>gi|42518322|ref|NP_964252.1| hypothetical protein LJ0236 [Lactobacillus johnsonii NCC 533]
 gi|41582606|gb|AAS08218.1| hypothetical protein LJ_0236 [Lactobacillus johnsonii NCC 533]
          Length = 273

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 42/216 (19%), Positives = 76/216 (35%), Gaps = 29/216 (13%)

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-FKSFWSEGSQPRL 194
             T+ R    +AV    +  NP L  +   +     + WTKE+ ++   S        RL
Sbjct: 1   MYTAFRQSLDYAVEINLIPANPSLKTKSVPKGNATAKYWTKEEFEKVLSSVSVSSFYERL 60

Query: 195 AFEFLLY---SGLRCSDSCRAGVQHLQNNIFSIK------------------TQKTGTII 233
            +   L+    G R S++       +  N   ++                   +   +  
Sbjct: 61  IYVTFLFFYRMGCRVSEAGALRWSDVDLNNGKVRFINNLHYKNKMEYELVLYLKNDSSRR 120

Query: 234 TVELPDGFMKLLAMTPIGKET-----FFINNDKQKMNATQFSIWFKAKATKAGVNK-SAH 287
           T+ L D  +++L      +       F ++ D   +N +  S W K  +  AGV +    
Sbjct: 121 TLTLDDELVRVLEDWKKEQLKYSVHDFVLSYDNCPLNKSTLSKWLKRYSKIAGVPRVDGR 180

Query: 288 GVRKFSATIS-ADAGATAHELMATYGWKTVDQAETY 322
           G+R  +A+   A+ GA    +    G KT      Y
Sbjct: 181 GLRHSNASYLIAELGADVLTVSHRLGHKTPMTTLKY 216


>gi|326388779|ref|ZP_08210366.1| integrase/recombinase [Novosphingobium nitrogenifigens DSM 19370]
 gi|326206737|gb|EGD57567.1| integrase/recombinase [Novosphingobium nitrogenifigens DSM 19370]
          Length = 324

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 46/300 (15%), Positives = 88/300 (29%), Gaps = 44/300 (14%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG----DFDYRKITTKHIRSGVES--- 125
           WL+ +   S H      + R ++      I  + G          I+   +R+ +     
Sbjct: 8   WLVEQRSASVHTIR---SYRDTWRLLLRFIAERKGGGVARVALADISADEVRAFLHHTEH 64

Query: 126 -RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINP--------CLSVERPKRKTEGIRPWTK 176
            R  T  +    L ++R  F +         NP         L+V   +  T        
Sbjct: 65  GRGSTIGTRNCRLAAIRSFFSF-----VADRNPEYVAQCAEVLTVPLKREPTSAPCYLEP 119

Query: 177 EDMQQFKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT--QKTG 230
            +++   +        G +      FL  SG R  ++       ++ +         K  
Sbjct: 120 AEVEAILAQPDRSTVAGMRDHALLSFLYNSGARIQEALDLCPDAIRFDAPHCARLNGKGR 179

Query: 231 TIITVELPDG----FMKLLAMTPIG-KETFFINNDKQKMNATQFSIWFKAKATKAGV--- 282
                 L         KLL   P    E  F+N   + + A+       A   +A     
Sbjct: 180 KERICPLWPETVTLIEKLLERQPRAPDERIFVNRYGKPLGASGVRFKLAAYVDEAAKAVP 239

Query: 283 -----NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIRLGIKNS 336
                + + H  R  +A     AG     + +  G  ++D    Y +   +  R  ++  
Sbjct: 240 SLRSKHVTPHSFRHATAVHLVAAGVDITVIRSWLGHVSLDTTNHYAQANLETKRKALEQV 299


>gi|313159042|gb|EFR58417.1| site-specific recombinase, phage integrase family [Alistipes sp.
           HGB5]
          Length = 423

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 50/281 (17%), Positives = 82/281 (29%), Gaps = 26/281 (9%)

Query: 90  NSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFL----TSMRVL 143
             +         I +  K  D    ++            KH    A   +     S++ +
Sbjct: 135 RYQTLRRDLSLFICQDYKVKDIPLVELDQSFAEKFAAYLKHVKGLADTTISVEIKSLKHI 194

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF---KSFWSEGSQPRLAFEFLL 200
            K A     +  NP         + E I   T+E++ +    K       + R  F F  
Sbjct: 195 VKKAFNDGQMEKNPFAYYYYFADQPE-IEYLTEEEINKLIIGKVKQQRQDRTRDMFLFCC 253

Query: 201 YSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF 255
           ++GL  +D  +   + L+         S   QKT    TV+L      +L    I    F
Sbjct: 254 FTGLSYADLAKLSYEELKQTPNGAWWISSIRQKTKVPFTVKLLPVAKAILEKYRIPANRF 313

Query: 256 ---FINNDKQKMNATQFS---IWFKAKATKAGVNK--SAHGVRKFSATIS-ADAGATAHE 306
              F  N  +              K  A + G+ K    H  R   AT      G     
Sbjct: 314 NRLFPENPGKVFPVASLKSSDASLKHIARQCGIAKNLKFHTARHTFATTVSLMNGIPLET 373

Query: 307 LMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
           +    G K     + Y K  ++  +      RI   +    
Sbjct: 374 VSKMLGHKYTTTTQIYAKVTNQ--MIGNAISRIEDKIGDRF 412


>gi|159904961|ref|YP_001548623.1| integrase family protein [Methanococcus maripaludis C6]
 gi|159886454|gb|ABX01391.1| integrase family protein [Methanococcus maripaludis C6]
          Length = 295

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 42/282 (14%), Positives = 96/282 (34%), Gaps = 31/282 (10%)

Query: 74  LISEYRK--SAHWGSLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHIRSGV------- 123
           L+ ++ K  S H    + N+   ++S     +R    +  +  IT +   +         
Sbjct: 8   LVEKFLKFHSGH----SQNTVKYYKSGLKAFMRYFDENKTWENITIEDAINFYNGYNKTG 63

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS-VERPKRKTEGIRPWTKEDMQQF 182
           + R    ++ I+ L  +   ++WAV  +++  NP  + V+  K + +     +++ +   
Sbjct: 64  DGRAVNKNTKIKRLNDVNRFYEWAVEHQFLFKNPIKTFVKTLKFEKKERINLSEKQVATV 123

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDG 240
            +         +   FLL +G+R S+        +   +    I+  K G    V + + 
Sbjct: 124 LAKVMNYDY-YVYTLFLLKTGVRISEFQNILFNDVDLEDRSIYIRDGKGGKDRYVFIDNE 182

Query: 241 FMKLLAMTPI-------GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-----SAHG 288
            +  L              + FF+    +K+        F+    +   +K     + H 
Sbjct: 183 LLNHLKKYIAYRENLNLKTDCFFVTEQGKKVTNYAIDK-FRDYLKEVTKDKIPFDVTPHV 241

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
            R    T++ +       L    G   ++    Y       R
Sbjct: 242 FRHTFGTLACEDEMNLIVLSKIMGHSNLNTTSGYVHSNKESR 283


>gi|29293004|gb|AAO73844.1|AF335469_1 FotS [Escherichia coli]
          Length = 199

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 24/167 (14%), Positives = 52/167 (31%), Gaps = 15/167 (8%)

Query: 174 WTKEDMQQFKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQK 228
            +++++       +E     +           GLR S+     V    +     +IK  K
Sbjct: 6   LSEKEVHCLLKAAAENQYSVRDYCMISMAFIHGLRVSELVNLKVDDYDSLSAQLNIKRLK 65

Query: 229 TGTIITVELPDGFMKLLAMTPIGKETF--------FINNDKQKMNATQFSIWFKAKATKA 280
            G      L     +LL      ++T+        F++ +   ++  +F    +    +A
Sbjct: 66  NGFCTIQPLLPDENELLQCWLDERKTWDGHESCWLFLSKNGGPLSRQRFWQLLRKYGDEA 125

Query: 281 --GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
              +    H +R       A+ G     +    G + +     YT  
Sbjct: 126 HLTIKVHPHMLRHACGFNLAERGNDTRLIQDYLGHRNIRHTVHYTAS 172


>gi|15866616|gb|AAL10406.1|AF416297_1 IntI3 integrase [Serratia marcescens]
 gi|801874|dbj|BAA08929.1| integrase [Serratia marcescens]
 gi|16902299|dbj|BAB71947.1| integrase [Serratia marcescens]
          Length = 346

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 47/316 (14%), Positives = 99/316 (31%), Gaps = 66/316 (20%)

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSG 122
           P ++K L+ + R+   +   ++ +  ++  +             G    R++    +   
Sbjct: 15  PRSIK-LLDQVRERVRYLHYSLQTEKAYVYWAKAFVLWTARSHGGFRHPREMGQAEVEGF 73

Query: 123 VE----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINP-CLSVERPKRKTEGIRPWTKE 177
           +      ++  P++  Q L ++  L++  +  E     P    + RP  +       T +
Sbjct: 74  LTMLATEKQVAPATHRQALNALLFLYRQVLGMEL----PWMQQIGRPPERKRIPVVLTVQ 129

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITV 235
           ++Q   S    G++  LA   L  SGLR  ++    V+ +    +   +++ K      V
Sbjct: 130 EVQTLLS-HMAGTEALLA-ALLYGSGLRLREALGLRVKDVDFDRHAIIVRSGKGDKDRVV 187

Query: 236 ELPDGFMKLLAMT------------PIGKETFFI-------------------------- 257
            LP   +  L                 G+   ++                          
Sbjct: 188 MLPRALVPRLRAQLIQVRAVWGQDRATGRGGVYLPHALERKYPRAGESWAWFWVFPSAKL 247

Query: 258 -------NNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELM 308
                     +  +   + +   K    +AG+ K  S H +R   AT    AG     + 
Sbjct: 248 SVDPQTGVERRHHLFEERLNRQLKKAVVQAGIAKHVSVHTLRHSFATHLLQAGTDIRTVQ 307

Query: 309 ATYGWKTVDQAETYTK 324
              G   V     YT 
Sbjct: 308 ELLGHSDVSTTMIYTH 323


>gi|87125131|ref|ZP_01080978.1| integron integrase [Synechococcus sp. RS9917]
 gi|86167451|gb|EAQ68711.1| integron integrase [Synechococcus sp. RS9917]
          Length = 323

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 51/315 (16%), Positives = 102/315 (32%), Gaps = 59/315 (18%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----KHT 129
           LI  YR+       A  +  ++E +  + +R  G    R++ +  + + +       K +
Sbjct: 10  LIQRYREELQARHYARRTVATYEQWLRRFLRFHGMRHPREMGSAEVNAFLTHLAVEGKVS 69

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            S+  Q L+++  L++  + ++         V R + +       ++ +++  +    EG
Sbjct: 70  ASTQNQALSALLFLYRELLERDLELE----GVVRARTRRRLPVVLSEAEVRAVR-LHLEG 124

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELP----DGFMK 243
               L    L  SGLR  ++ R  V+ L       +++  K G      LP        +
Sbjct: 125 VPA-LVVGLLYGSGLRLMEALRLRVKDLDFERRELTVRDGKGGKDRMTLLPQSLVPELRQ 183

Query: 244 LLAMTPIGKETFFINNDKQKM----------NATQFSIW--------------------- 272
            L +              + +          +A +   W                     
Sbjct: 184 HLLVVRQLHRADLNAGWGKVLMPYALARKYPHADREWGWQWVFPQQRRWRDSVSGQQGRH 243

Query: 273 ----------FKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
                      K    +A V K+A  H  R   AT   + G     +    G + V    
Sbjct: 244 HIDPALVQKAVKQAVAEAAVTKAASCHTFRHSFATHLLERGQDIRTIQELLGHQDVCTTM 303

Query: 321 TYTKGADRIRLGIKN 335
            YT   +R  LG+ +
Sbjct: 304 IYTHVLNRGPLGVNS 318


>gi|257451926|ref|ZP_05617225.1| integrase/recombinase [Fusobacterium sp. 3_1_5R]
 gi|317058477|ref|ZP_07922962.1| DNA integration/recombination/inversion protein [Fusobacterium sp.
           3_1_5R]
 gi|313684153|gb|EFS20988.1| DNA integration/recombination/inversion protein [Fusobacterium sp.
           3_1_5R]
          Length = 333

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 41/275 (14%), Positives = 85/275 (30%), Gaps = 42/275 (15%)

Query: 88  AVNSRISFESYFDQIIR--KSGDFDYRK---------ITTKHIRSGVE----SRKHTPSS 132
           +  +   +  Y    +     GD  +++         I  + +   +      R    +S
Sbjct: 33  SPKTLQDYLFYLKDFLSFVYDGDGSFQQEEILPLMKGIEKEDVEQYIAHLLQERNMKKTS 92

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED------MQQFKSFW 186
             + +++M+ L+K    ++Y   NP   V+  K                   ++QF+   
Sbjct: 93  VNKVVSAMKSLYKEL--EQYQVENPFRYVKLFKTTRNLDNILKISSNDIKKIIEQFQVKS 150

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGFM 242
            +  +  +    L Y+G+R  +      +HL N        ++  K+G      L    M
Sbjct: 151 EKDYRNLMILYTLYYTGMRSDELLHMEFRHLMNREGSYFLKLEKTKSGREQYKPLHPALM 210

Query: 243 KLLAMTPI-------------GKETFFINND--KQKMNATQFSIWFKAKATKAGVNKSAH 287
           + L                       F ++    + ++        K+       + S H
Sbjct: 211 EKLQEYKKEMKALYQLEEEDLQNHFVFCSHFDKNKALSYRALYDLIKSLGLSIEKDMSPH 270

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
            +R   AT  +  GA   E+    G       E Y
Sbjct: 271 NIRHAIATELSLNGADLVEIRDFLGHADTKVTEIY 305


>gi|221640425|ref|YP_002526687.1| phage-related integrase [Rhodobacter sphaeroides KD131]
 gi|221161206|gb|ACM02186.1| phage-related integrase [Rhodobacter sphaeroides KD131]
          Length = 432

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 44/333 (13%), Positives = 107/333 (32%), Gaps = 32/333 (9%)

Query: 9   PFVTKERTRHGKIIYYFRK---GHGRRIRLPYPHESTFIPAYMSA-------------LT 52
           P +      +G+ ++ F K   G  +R  L   +  T I    +A               
Sbjct: 29  PGLRLRIYPNGRKVWSFEKRIKGGPKRKHLLGTYPDTSIKEARAAALEIELEASKGVDRV 88

Query: 53  GSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYR 112
               K +     RK+   L   + E  ++ H  +L   S+        + +    D   R
Sbjct: 89  AEAEKAKLDAEERKRKAVLVADVVEAHRALHLANL--RSQRDRLRTLKEALAPHMDQPVR 146

Query: 113 KITTKHIRSGVESRKHTPS--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170
           ++    +++ ++ +    +   A +   ++    K+A ++ Y   +  L +E+  ++   
Sbjct: 147 ELRRADLQAAIDRKAAAGALIQANRTKAALSKFAKFAWQRGYTDDHIGLGLEKAVQEQPR 206

Query: 171 IRPWTKEDMQQ-FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQ 227
            R  + E+++  + + +  GS        L+ +  R S+                ++   
Sbjct: 207 DRVMSLEEVRAVYDATFQMGSLWGPLVRMLVLTLQRRSEVAGLKWSEVDFDGECMTVAGG 266

Query: 228 KTGTI------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ-FSIWFKAKATKA 280
           +T         +   +     +L A + +  E  F       ++              + 
Sbjct: 267 RTKNRKMHKTHLAPPVLADLRELRAASSV--EQVFTTTGTTPVSGFSKVKERLDVLLPED 324

Query: 281 GVNKSAHGVRKFSATISADAGATAHELMATYGW 313
               + H +R   AT  A+ G +   +      
Sbjct: 325 MEPWTFHDLRTAFATQMAEDGESEAVIDRILNH 357


>gi|188583991|ref|YP_001927436.1| tyrosine recombinase XerC [Methylobacterium populi BJ001]
 gi|179347489|gb|ACB82901.1| tyrosine recombinase XerC [Methylobacterium populi BJ001]
          Length = 367

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 50/332 (15%), Positives = 104/332 (31%), Gaps = 38/332 (11%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWLISEYRKS-AHWGSLAVNSRISFESYFDQIIR----K 105
              S P  +           L+  +  +R++ A    +A N+  ++E    Q +     +
Sbjct: 3   RAASPPAVDAEALLPPGDAALRAAMLGWREALARERRMAANTVEAYERDLRQFLAYRAAR 62

Query: 106 SGDFDYR---KITTKHIRSGVESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCL 159
            G         +  + +R+ + +R+       S ++ L  +R   ++  R+ + ++    
Sbjct: 63  FGTPTIAGLIALKPRDLRAFMAARRAEGIGGRSLMRMLAGLRSFARFLEREGHGSVAALG 122

Query: 160 SVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP------------RLAFEFLLYSGLRCS 207
           +V  PK +    RP     +    +  + G++P                  L  SGLR S
Sbjct: 123 AVRSPKVERRLPRPLP---VPAALAMTAPGTRPDDSREPWVLARDAAVIALLYGSGLRIS 179

Query: 208 DSCRAG-VQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAMTPIGKET-------FFIN 258
           ++            I  ++ T K G +  V +     + +A                F+ 
Sbjct: 180 EALGLAARDAPVPGIDEVRVTGKGGKVRAVPVLPAVAEAVAAYLSLCPHPLDPEGPLFVG 239

Query: 259 NDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTV 316
                ++         A     G+    + H +R   AT           +    G  ++
Sbjct: 240 VKGGPLSPRVVQYAVAALRGALGLPESATPHALRHSFATHLLARQGELRAIQELLGHASL 299

Query: 317 DQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
              + YTK  D  RL               +P
Sbjct: 300 STTQIYTK-VDAARLMSAFEDAHPRARRLPEP 330


>gi|303251326|ref|ZP_07337504.1| hypothetical protein APP6_0527 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|302649868|gb|EFL80046.1| hypothetical protein APP6_0527 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
          Length = 305

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/295 (13%), Positives = 89/295 (30%), Gaps = 52/295 (17%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--- 126
           +   L+ ++     +  L  +++ S+++  + I ++  D     I    + +        
Sbjct: 6   SFNKLLEQFFFYRSY--LRPDTKRSYKNIINIIQQRFPDRSADSINNIDLITWRNEILDV 63

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEY--VAINPCLSV-----------------ERPKRK 167
           K  P +   ++  ++ ++   ++     ++ NP   +                 ++    
Sbjct: 64  KIKPVTWNNYVRHLKAIYNVGIKYNILQISNNPFYGLFIKESKRKKKTLSKKQLDKLSYA 123

Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN--IFSIK 225
             G         +  K  W            L  +G+R S   +  +Q +  N  I  I 
Sbjct: 124 LNGNIVLP----EMLKPSWFINCLVMT----LRCTGIRRSQLVQLQIQDVDLNRRIIYIS 175

Query: 226 TQ--KTGTIITVELPDGFMKLLAMT---------PIGKETFFIN-------NDKQKMNAT 267
            +  K      V + D     + +          P+  + F  N          + M+  
Sbjct: 176 PEINKNHDYHIVPISDNLYPHIELLVEELRKQKQPLDSQLFNFNLFSKVTRRKGKPMSVD 235

Query: 268 QFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           Q +  F+  +   G   S H  R   AT         + +    G K +     Y
Sbjct: 236 QVTHIFRRISEVVGFTSSPHRFRHTVATSLMKNPENVYVVQKLLGHKDISVTLGY 290


>gi|293570852|ref|ZP_06681899.1| integrase [Enterococcus faecium E980]
 gi|291609120|gb|EFF38395.1| integrase [Enterococcus faecium E980]
          Length = 379

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 57/382 (14%), Positives = 123/382 (32%), Gaps = 53/382 (13%)

Query: 10  FVTKERTRHGKIIYYFRKGHGRRIRLPYPH----ESTFIPAYMSALTGSTPKREYINSPR 65
           +V + +    K I  +   +  + R                    L      +E +    
Sbjct: 2   WVEQTKDGRFKFIERYVDPYTEKTRKKSTTLTSNSPQAWKKAQKILDKKI--KEALEDYN 59

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRIS---FESYFDQIIRKSGDFDYRKITTKHIRSG 122
           K   T   L  E+ +         +        +     I   +   +  +     I   
Sbjct: 60  KSDITFGELYKEWYEYYKQHVKRTSYLKVPMMMKHVSKHISDDTIVRNIDETLINKIIED 119

Query: 123 VESRKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWT----- 175
           + +    + +   Q  T++ V+  +A+ ++Y+  NP L+V+  PK+  E  R  +     
Sbjct: 120 MYTFGDLSLNYTKQTKTTLSVMLNYAIDRKYIQRNPALAVKIHPKKVEEEKRRLSMNKKY 179

Query: 176 --KEDMQQFKSFWSEGSQPRL---AFEFLLYSGLRCSDSCRAGVQHLQNNIFSI------ 224
             KE++ Q         + +L     EFL  +GLR  +     ++  ++   SI      
Sbjct: 180 LEKEEIDQILKQLYSNPRRKLHGIIAEFLYLTGLRYGELLALQMKDYEDGKISINGTLDY 239

Query: 225 -----------KTQKTGTIITVELPDGFMKL---------LAMTPIG-KETFFINNDKQK 263
                        + T +   V+LP+   +L         LA  P    +  FI+     
Sbjct: 240 TSVKMDNAIKTTPKNTYSQREVQLPNRAKELIESVIADNILAGRPTDPDQYIFISTSGTP 299

Query: 264 MNATQFSIWFKA--KATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-E 320
           +    F+       +  +   + S+H  R    ++ ++ G     +M   G    +    
Sbjct: 300 LALHSFNAILHKVEEELELEKSLSSHIFRHSHVSLLSELGVPLKAIMERVGHSDANTTLS 359

Query: 321 TYTKGADRIRLGIKNSRRISSV 342
            Y     R +  +    +++S+
Sbjct: 360 IYNHVTKRAKQQV--IDKLNSL 379


>gi|256964200|ref|ZP_05568371.1| phage integrase [Enterococcus faecalis HIP11704]
 gi|256954696|gb|EEU71328.1| phage integrase [Enterococcus faecalis HIP11704]
          Length = 382

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 71/387 (18%), Positives = 128/387 (33%), Gaps = 66/387 (17%)

Query: 14  ERTRHGKIIYYFRK--GHGRRI-RLPYPHESTFIPAYMS--ALTGSTPKREYINSPRKKP 68
            + ++G+  +YF+   G      +  Y  +  F     +  AL     + +    P    
Sbjct: 5   YKKKNGEKAWYFKTYLGTDPLTGKKKYTTKRGFRTQKEAKIALARLEMEIQKNGIPSSTN 64

Query: 69  TTLK-----WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
            T +     WL   Y+ +    S +  + I F  +   I+   G  +  KI+T + +  V
Sbjct: 65  ITFQEVAFMWL-ENYKNTVKESSYS-RTEIIFRKH---ILPSFGKIEISKISTAYCQKIV 119

Query: 124 ESRKHTPSSAIQ--FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT-----EGIRPWTK 176
            +     SS     F+  M  +FK+A+       NP ++V  PK +      + I+ +TK
Sbjct: 120 NTWHSEGSSKQYPLFINYMNQVFKFAINIGVTNQNPVINVIVPKNQDIITSEKKIKFYTK 179

Query: 177 EDMQQFKSFWS------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----- 225
           + +Q F              +    F  L +SG R  +        L      ++     
Sbjct: 180 DQLQIFLKSIEQSESTYITIRDYTLFRLLAFSGCRIGELLALTWDDLNIKTGELQINKTI 239

Query: 226 ----------TQKTGTIITVELPDG----------------FMKLLAMTPIGKETFFINN 259
                     T KT       + D                  +KL    P      F N 
Sbjct: 240 AKSDHYYVSNTPKTKKSNRTLILDAKTITILKKWKLEQKKYLLKLGYTQPSR---IFTNE 296

Query: 260 DKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           + +       +  +     KA + N   HG R   A++   AGA   E     G   +  
Sbjct: 297 ENEFTINQAITDRYNIYRKKANLPNIGLHGFRHTHASLLYYAGADHKEAQERLGHANIKT 356

Query: 319 A-ETYTKGADRIRLGIKNSRRISSVVD 344
             +TYT   +  +   K + ++S  + 
Sbjct: 357 TLDTYTHLTNDGK--EKTTEKLSKYIG 381


>gi|225388779|ref|ZP_03758503.1| hypothetical protein CLOSTASPAR_02515 [Clostridium asparagiforme
           DSM 15981]
 gi|225045161|gb|EEG55407.1| hypothetical protein CLOSTASPAR_02515 [Clostridium asparagiforme
           DSM 15981]
          Length = 285

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 45/283 (15%), Positives = 92/283 (32%), Gaps = 25/283 (8%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
           +S+Y++  +    +  +  S+               Y K T    +  + SR + P++  
Sbjct: 15  LSQYQQHLYEQEKSHPTIQSYLRSLKAFAVFLDGRSYTKETAIRWKETLTSR-YAPNTVN 73

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI----RPWTKEDMQQFKSFWSEGS 190
             L ++    ++       +  P   V+  K + E      R  T+ +  +  +      
Sbjct: 74  AMLAAINGFAEF-------SGCPQFKVKPLKIQRELFIRPERELTRSEYGRLVNAADRSG 126

Query: 191 QPRLAFEF--LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL--- 245
             RL+     +  +G+R S+      + ++     +     G   TV LP+   +L+   
Sbjct: 127 NRRLSLVLQTICATGIRVSELRFITAEAVEKGYAQVDC--KGKRRTVFLPEKLRRLIGIY 184

Query: 246 -AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAG 301
                      FI    + ++ +      KA   +AGV       H +R   A       
Sbjct: 185 MKKQKKTAGAVFITRSGRPLDRSNIWRDMKALCERAGVEPGKVFPHNLRHLFARTYYMLE 244

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
                L    G   V     YT  A+   +  +   R+  V+ 
Sbjct: 245 KDLSRLADILGHTNVSTTRIYT--AESGTVHARQMERMGLVIT 285


>gi|300172888|ref|YP_003772053.1| prophage integrase [Leuconostoc gasicomitatum LMG 18811]
 gi|299887266|emb|CBL91234.1| prophage Lp3 protein 1, integrase, putative [Leuconostoc
           gasicomitatum LMG 18811]
          Length = 373

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 42/283 (14%), Positives = 94/283 (33%), Gaps = 34/283 (12%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH 128
           T+K L   + ++    S+  ++     + F   ++    D     I    ++  + + + 
Sbjct: 68  TVKELYDIWLETYQ-HSVEESTLGKTMTIFRLHVLPTWRDTLLTDIKPLDLQRYINTLQR 126

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS- 187
                 +     R L   AV+ + +A+NP   ++ P+ +    +P    D+ +FK+F + 
Sbjct: 127 DMQMYKKVTGYFRRLLDVAVKMDVIAVNPFTKIDLPRERKVINKPKQFMDVDEFKAFIAV 186

Query: 188 -------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI---------------- 224
                     Q         ++G+R  +      +H+  +   +                
Sbjct: 187 LDSRYSQINLQAYTLLRLGAFTGMRTEELLALQWRHIDFDNGYVSITQALGRGLGGSTYI 246

Query: 225 -----KTQKTGTIITVELPDGFMKLLAMTP-IGKETFFINNDKQKMNATQFSIWFKAKAT 278
                +T K    I  ++          T     + F   +    +   + + W    + 
Sbjct: 247 KEPKSRTSKRTLKIDNKMLSVMSSWYDTTKYNRDDNFVFTHGGHTLQPLRPNKWLHDVSD 306

Query: 279 KAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
           + GV    S H +R   AT++ D GAT  ++    G       
Sbjct: 307 RYGVAVGLSMHKLRHTWATLALDQGATVKQVQTYLGHADASIT 349


>gi|257880148|ref|ZP_05659801.1| phage integrase [Enterococcus faecium 1,230,933]
 gi|294618944|ref|ZP_06698446.1| integrase [Enterococcus faecium E1679]
 gi|257814376|gb|EEV43134.1| phage integrase [Enterococcus faecium 1,230,933]
 gi|291594805|gb|EFF26180.1| integrase [Enterococcus faecium E1679]
          Length = 258

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 41/236 (17%), Positives = 88/236 (37%), Gaps = 39/236 (16%)

Query: 142 VLFKWAVRQEYVAINPCLSV---------ERPKRKTEGIRPWTKEDMQQFKSFWSE-GSQ 191
           ++FK+A R+  +  NP   V         E  K++ +G    +KE++Q   S       Q
Sbjct: 25  MIFKFANRRYGLKYNPVNGVSLARKPKTNEEIKKEKDGY--LSKEEVQMIASKQKSSHQQ 82

Query: 192 PR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI------------KTQKTGTIITVEL 237
            R  L  +FL  +GLR  +           N  ++             T+ TG+  T+EL
Sbjct: 83  SRYSLITKFLFLTGLRYGELISLTESDYDGNKITVSGTYDYELKIKTTTKNTGSYRTIEL 142

Query: 238 PDGFMKLLAMTP--------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287
                +++               +  FI+ +   ++   ++   +A + +  ++K  S+H
Sbjct: 143 SSNAKEIIDQLIEENKLIKNNKDKYIFISKNGNPISIQAYNQSLRAVSKELNIDKKVSSH 202

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSV 342
            +R    ++  + G     +M   G +      + YT       +  +   ++  +
Sbjct: 203 MLRHSHISLLTELGIPLKAIMDRVGHEDSKTTLKIYTHTT--KNMQNQLVEKLGKI 256


>gi|323185749|gb|EFZ71110.1| prophage lambda integrase [Escherichia coli 1357]
          Length = 372

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 60/355 (16%), Positives = 112/355 (31%), Gaps = 42/355 (11%)

Query: 17  RHGKIIYYFRKG-HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT----- 70
           R G++ Y ++    G+   L          A  +    +  + EY      +  +     
Sbjct: 22  RTGRVYYQYKNPVTGKFHGLGTDKGKAEKIASTANQRIAAAEAEYFMRKIDESPSATKRR 81

Query: 71  ---LKWLISEYRKSAHWG----SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
              LK  +  Y K          +A  +          ++ + G+   +++  +     +
Sbjct: 82  GIRLKAWVDRYLKIQDTRLKNGDIAATTHKEKARMAAYLVSRLGNHPLKELEVRDFALIL 141

Query: 124 ESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAI--NPCLSVERPKRKTEGIRPWTKEDM 179
           +    K   S+A         ++K A     V    NP  +  +P  K    R  T ED 
Sbjct: 142 DEWLDKDMVSTARVNRGLWVDIYKEAQHAGEVPPGWNPPEATRKPIPKVTRAR-LTLEDW 200

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239
           Q+  +   E    R A    L +G R  D C      + N    I   KTG  + + L  
Sbjct: 201 QKIYNATPEKHFIRNAMLLALVTGQRRDDICHMRFSDVWNEHLHITQGKTGMRLALPLTL 260

Query: 240 G-------FMKLLA-MTPIGKETFFINNDK----QKMNATQFSIWFKAKATKAGV----- 282
                     +++          + I++      + M+    S +F      AG+     
Sbjct: 261 RCDAIGITLKEVIDGCRDRILSPYLIHSRHQKQPKPMSKDNLSDYFAKARDLAGITPPAG 320

Query: 283 --NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY--TKGADRIRLGI 333
               + H  R  S  +    G     L    G K     + Y  T+G + ++L +
Sbjct: 321 KTPPTFHEQRSLSERLYRAQGIDTKTL---LGHKVQATTDRYNDTRGQEWVKLVV 372


>gi|299821514|ref|ZP_07053402.1| bacteriophage integrase [Listeria grayi DSM 20601]
 gi|299817179|gb|EFI84415.1| bacteriophage integrase [Listeria grayi DSM 20601]
          Length = 390

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 57/395 (14%), Positives = 123/395 (31%), Gaps = 67/395 (16%)

Query: 13  KERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN--------SP 64
             R R+GK  Y  +       ++    +S F       +  +    + I         S 
Sbjct: 3   SYRKRNGKWEYRIKYRDPATGKIKEKMKSGFSRK-SDCVEAAAEMEKKIKHGHFNNDASV 61

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
                 LKWL      S +      ++    E  + ++ +  G     +IT+   +  + 
Sbjct: 62  MFHEYALKWLKD--YASNN----KPSTVRPREIEYRRLAKHFGYAKINQITSIQYQDYLN 115

Query: 125 SR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR-----------KTEGI 171
           S   K+  ++     ++ R++FK A +   +  +P L  + PK+               +
Sbjct: 116 SLNEKYATNTISGTHSTARMIFKRAYQDNLIDRDPTLYAKLPKKIETAQSIQDSINNRRV 175

Query: 172 RPWTKEDMQQFKSFWSEG--SQPRLAFEFLLYSGLRCSDSCRA----------------- 212
           + +++E++  F         S     F  L+ +G+R  + C                   
Sbjct: 176 KIFSREEISLFLHNAKTQGLSNDFEIFSLLVNTGMRVGELCALQENALLKKENGYYIRIT 235

Query: 213 ----GVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG------------KETFF 256
                  +  +    +  +  G+I  +E+     +L+    I             K   F
Sbjct: 236 QTIYNPTNKMDKYQLLPPKTKGSIRDIEISYYIYELIRKQIIKQKELYIALGGAMKRFIF 295

Query: 257 INNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWK 314
             +        Q +   +       +    S H  R   A+I  + G     +    G  
Sbjct: 296 SKDFGYPETPKQIANRMRRILKLCDLPSYYSPHNFRHSYASILEEEGVPTLYIQKQLGHS 355

Query: 315 TVDQA-ETYTKGADR-IRLGIKNSRRISSVVDSDD 347
           T +   ETY    ++  +   +    I+  + S+ 
Sbjct: 356 TFETTKETYIHLTEKTQKEASEKVLNIAESLSSER 390


>gi|212715996|ref|ZP_03324124.1| hypothetical protein BIFCAT_00908 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661363|gb|EEB21938.1| hypothetical protein BIFCAT_00908 [Bifidobacterium catenulatum DSM
           16992]
          Length = 406

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 57/389 (14%), Positives = 112/389 (28%), Gaps = 69/389 (17%)

Query: 20  KIIYYFRK-------GHGRRIRLPYPH--ESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
           K  ++FRK          RR  +      +S     + + +     +R+     +  P T
Sbjct: 21  KGRWHFRKDMGTDPATGRRRPPIEATGMVKSEARARFQAKIA--EWERDGRLPTKDGPKT 78

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
                  + +     ++   +  +  S+   +    G+    ++T   I       + T 
Sbjct: 79  -ADYFERWMEEHR-TAVNPTTWRNESSWMRTMNAIIGNIRLNRLTADDINGMCRRLRRTR 136

Query: 131 SS--AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-FKSFWS 187
            S     +L  +  + + A R   +A +P  +V R              D  +  ++  +
Sbjct: 137 KSKTVNTYLAVLGAMLRTAKRDGLIADDPMENVGRMPEDRYERPILDVADPAKVIEAALA 196

Query: 188 EGSQP-------------RLAFEFLLYSGLRCSDSCRAGVQHLQ---------------- 218
           E                  L FE    +G+R  +        L+                
Sbjct: 197 EPDPAVAVFDSPDEREKWALMFELAFTTGMRPGERYGLMPYQLELHHGIPVINVCQQAKP 256

Query: 219 ----------------NNIFSIKTQKTGTII-TVELPDGF-----MKLLAMTPIGKETFF 256
                           +    +   KT   + TV +P G        ++          F
Sbjct: 257 IPAGATIPDWMEAEHLDGAIWLTKPKTAKGVRTVPIPQGLWDRLWAHIVKWGVPSHGLVF 316

Query: 257 INNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKT 315
            N   + +        ++     AG+     +  R + AT  A AGA+  E  A  G   
Sbjct: 317 TNLYGRPIRRDNEEKRWRRALKMAGLPYVDIYSARHWLATELAAAGASDEERTAIMGHTD 376

Query: 316 VDQAETYTKGADRIRLGIKNSRRISSVVD 344
           +     YT   +R RL       +  + D
Sbjct: 377 IHTTSVYTHWRER-RLAKTLDAALPDLRD 404


>gi|149907688|ref|ZP_01896435.1| hypothetical protein PE36_07362 [Moritella sp. PE36]
 gi|149809358|gb|EDM69287.1| hypothetical protein PE36_07362 [Moritella sp. PE36]
          Length = 389

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/247 (15%), Positives = 79/247 (31%), Gaps = 15/247 (6%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWA 147
           +V +R       D   R   D     IT    +  +E +  T     + L+ +  +F  A
Sbjct: 118 SVKTR-WRRLAGDIARRTLSDVSRIDITQILTQLALEVKGST---VNRHLSLLSRIFSTA 173

Query: 148 VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL-AFEFLLYSGLRC 206
           V  E +  NPC  +++        R  +  ++  +     E       A    L+ GLR 
Sbjct: 174 VDLELLHRNPCKGIKKWPEANIRDRVLSDVELYHYIDKAIEIDSFHSKALLVSLFLGLRI 233

Query: 207 SDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLL-AMTPIGKETFF----INN 259
            ++       + N+    S+   K G    + + +   KLL     +    +     + +
Sbjct: 234 GNAISIEKIMINNDFSLLSLPQTKNGRAYRIAINEPAKKLLIECAALSWNHWLFPSALKD 293

Query: 260 DKQKMNATQFSIWFKAKATKAG---VNKSAHGVRKFSATISADAGATAHELMATYGWKTV 316
           ++            +     A     +   H +R+  A+        A  +      ++V
Sbjct: 294 NQHISAPKDCHAKIRDHVALASGCYEHVVIHDLRRTYASRQLQLTGDARLVQQNLFHQSV 353

Query: 317 DQAETYT 323
              E Y 
Sbjct: 354 TTTERYA 360


>gi|26986514|gb|AAK02082.2| site-specific recombinase IntIA [Listonella pelagia]
          Length = 319

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/209 (15%), Positives = 63/209 (30%), Gaps = 52/209 (24%)

Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225
            + +     T++++++F        + +L    L  SG+R  +  R  +Q +  +  +I+
Sbjct: 98  TEKKLPVVLTRDEIRRFIQHIDP--KYKLQTLLLYGSGVRLMECLRLRIQDIDYDYGAIR 155

Query: 226 --TQKTGTIITVELPDGFMKLLAMTPIGKETFFINN------------------------ 259
               K G   TV L       L        +++  +                        
Sbjct: 156 VWQGKGGKNRTVTLAKELHSSLKAQVDLARSYYQKDCHMPGYAGVYISEGLQRKYPNAQL 215

Query: 260 ----------------------DKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSAT 295
                                  +  +N +      K  A  AG+ KS   H +R   AT
Sbjct: 216 DFNWHFLFPSAKLSVDPEMGELRRHHINESALQRAVKRSAKDAGIEKSVTCHTLRHSFAT 275

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTK 324
              ++GA    +    G   V   + YT 
Sbjct: 276 HLLESGADIRTVQEQLGHSDVKTTQIYTH 304


>gi|327192385|gb|EGE59347.1| DNA integration/recombination/inversion protein [Rhizobium etli
           CNPAF512]
          Length = 427

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 57/377 (15%), Positives = 120/377 (31%), Gaps = 38/377 (10%)

Query: 10  FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSA--LTGSTPKREYINSPRKK 67
           ++  +    G   +  R     +  +          A   A  +  +  +     + +K+
Sbjct: 34  YLIIQPLPGGGKSWAVRYKGKPKFTIGSVGAWKLADARKEAGRIMRAYDEGGDPRAEKKE 93

Query: 68  PTTLKWLIS----EYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSG 122
             +   LI     ++ K         ++  + + Y D+ +I +        I  + I + 
Sbjct: 94  LLSDDNLIENVLAQFVKRHVKRKNRDSTAQAQQRYIDKELIPRWKGKHVAAIRRRDIVTM 153

Query: 123 VES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
           ++       P +A++ L   R  F WAV   ++  +PC+ V  P    +  R  +  +++
Sbjct: 154 LDDVVESGRPQAAVRLLALTRKFFNWAVGTGWLDASPCVGVPVPAPVVKRKRVLSDSELR 213

Query: 181 -QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ------NNIFSIKTQKTGTII 233
             +K   + G       + L+ +G R  +   A                     K G   
Sbjct: 214 WVWKGAEAIGWPFGPMVQLLILTGQRREEVAAASWPEFDLIGKEPGWTIPGGRAKNGNEQ 273

Query: 234 TVELPDGFMKLLAMTPI--GKETFFINN----------DKQKMNATQFSIWFKAKATKAG 281
            V L    + +L   P   G+  F ++             ++          +++A ++G
Sbjct: 274 VVALAPTAVSILTSLPKVLGQSDFILSTNGDTSISGYSRGKRRLDEAMMKIARSEAEESG 333

Query: 282 --------VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY--TKGADRIRL 331
                      + H +R+  AT   D G   H + A      V  A  Y   +     R 
Sbjct: 334 NDPDEVKLEPFTLHDLRRTLATRLGDLGVAPHTVEAILNHARVGVAAHYNHARYEKEKRE 393

Query: 332 GIKNSRRISSVVDSDDP 348
            +    R    + S  P
Sbjct: 394 ALLRWERHIKKIISAGP 410


>gi|254827675|ref|ZP_05232362.1| tyrosine recombinase XerC subunit [Listeria monocytogenes FSL
           N3-165]
 gi|258600054|gb|EEW13379.1| tyrosine recombinase XerC subunit [Listeria monocytogenes FSL
           N3-165]
          Length = 291

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/278 (14%), Positives = 90/278 (32%), Gaps = 20/278 (7%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
             L+ +YR   +   L   +  +  S    ++  K    D  K+  + I S + +R    
Sbjct: 4   SDLLIKYRDYLYSKQLTDGTIDNNISIITRELFDKGVKIDITKVEYRKILSSMRNRLSK- 62

Query: 131 SSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
           ++   ++  ++  + + +  + Y   NP  S       ++      ++++      +   
Sbjct: 63  NTMYSYVNVIKRFYDYLIDFKFYNGKNPFSSSVVKITASKPKNVLYEDEILDIYKIFDME 122

Query: 190 SQ----PRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVE------- 236
            +        F+FL  +G+R ++     +      N + ++  +     I V        
Sbjct: 123 DKTTGYQEFLFDFLYSTGIRLAEFINLNIYDFDFENRVITVVGKGNKERIVVYNESLEQT 182

Query: 237 ---LPDGFMKLLAMTPIGKETFFIN-NDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKF 292
                     ++         F I+ N  Q++ A +                  H +R  
Sbjct: 183 MLSYLKARQAIMKFHRKSHSYFLIDFNTGQRLKAARVYNEIIRVGDIVHRKIHPHMLRHS 242

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
            AT   + G     +    G  +V   E YTK   + +
Sbjct: 243 FATHLLENGCDLRYIQELLGHSSVSTTEIYTKVQLKQK 280


>gi|218259428|ref|ZP_03475166.1| hypothetical protein PRABACTJOHN_00823 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225121|gb|EEC97771.1| hypothetical protein PRABACTJOHN_00823 [Parabacteroides johnsonii
           DSM 18315]
          Length = 408

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 50/296 (16%), Positives = 93/296 (31%), Gaps = 36/296 (12%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIR------KSGDFDYRKITTKHIRSGVESRKH- 128
            +Y +     + A  +   +E    +++          D   + I    I   +   K+ 
Sbjct: 118 EQYLEKVK-MNTADKTYSRYELTKKRLVEFMKFKYSISDILIKDINVVFIEDFLLYIKNN 176

Query: 129 ---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
              + ++A++F+   R +  +A     V  +P     R + +       T E++    + 
Sbjct: 177 YGCSHNTAMKFVQRFRTVVNFAKNTGLVTADP-FGSYRVRFERTDRDYLTMEEITTIYNH 235

Query: 186 W---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVEL 237
                   Q R  F F  Y+ L   D C    + ++           K  KT    TV L
Sbjct: 236 EFSSKRLEQVRDLFIFSCYTALSYIDVCELRQEDIRIGFDGNLWIIRKRHKTNVTSTVRL 295

Query: 238 PDG----FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRK 291
            D       K     P GK    I+N K        + + K  A    + K+   H  R 
Sbjct: 296 LDIPKAILEKYKEQLPNGKILPIISNQK-------MNDYLKEIAAICRIEKTLTYHVARH 348

Query: 292 FSATI-SADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346
             AT      G     +    G   +   + Y +  D       +   ++  +D+ 
Sbjct: 349 SCATSVLLANGVPIETVSKILGHTNIRTTQIYARITDLK--VSSDMEMLAQKLDTP 402


>gi|51571648|emb|CAH19070.1| DNA integrase [Pseudomonas aeruginosa]
          Length = 305

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/297 (13%), Positives = 91/297 (30%), Gaps = 62/297 (20%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129
           ++ + R+   +   ++ +  ++ ++    IR  G      + +  + + +      RK +
Sbjct: 16  VLDQLRERIRYLHYSLRTEQAYVNWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75

Query: 130 PSSAIQFLTSMRVLFK--WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            S+  Q L ++   +         ++       + RP+         T +++ +   F  
Sbjct: 76  VSTHRQALAALLFFYGKVLCTDLPWLQ-----EIGRPRPSRRLPVVLTPDEVVRILGFL- 129

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
           EG   RL  + L  +G+R S+  +  V+     +    ++  K      + LP+     L
Sbjct: 130 EGEH-RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSL 188

Query: 246 AMTPIGKETFFINN---------------------------------------------D 260
                    +++ +                                              
Sbjct: 189 REQLSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVR 248

Query: 261 KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKT 315
           +  M    F   FK    +AG+ K  + H +R   AT    +G     +    G   
Sbjct: 249 RHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSD 305


>gi|322376773|ref|ZP_08051266.1| toxin-antitoxin system, toxin component, PIN family [Streptococcus
           sp. M334]
 gi|321282580|gb|EFX59587.1| toxin-antitoxin system, toxin component, PIN family [Streptococcus
           sp. M334]
          Length = 381

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 46/303 (15%), Positives = 102/303 (33%), Gaps = 40/303 (13%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRSGVESRKH 128
           T   +   +  S    ++   +  + +   D +I     D   ++I+  + +       +
Sbjct: 69  TFAEVAELWLDSYK-NTVKPTTYQNVKKKLDVMIDLYFTDMKIQQISVAYCQKVAIQLSN 127

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT-EGIR-PWTKEDMQQFKSFW 186
                  + + +  +FK+    + +  NP   + +PK +  +G    +TK+++ +F   +
Sbjct: 128 RYILYANYYSVISRIFKYTTSIDIIKSNPLDKIIKPKNRPLKGKENYYTKQELTEFLKVY 187

Query: 187 SEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQ---------------NNIFSIKTQKT 229
               +P     F  L +SGLR  ++       +                N   +++  KT
Sbjct: 188 KANCKPVDYTFFHLLAFSGLRTGEAIGLMWSDVDFENKRLSISRTAVVVNKKQTVQDPKT 247

Query: 230 G-TIITVELPDGFMKLLAMTPI---------------GKETFFINNDKQKMNATQFSIWF 273
             +   + L D  + +L                         F N+    ++ +      
Sbjct: 248 KMSKRVITLDDETLNVLKFWKRQQIKEYFRASVPYKHDSNYIFTNSFGGWISPSAVKERL 307

Query: 274 KA--KATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIR 330
           +      K     + HG R   A++  +AG TA  +    G   V    + YT   D  R
Sbjct: 308 RRFFYEHKDVKKITPHGFRHTHASLLFEAGVTAKIISDRLGHNNVQTTLDMYTHINDNQR 367

Query: 331 LGI 333
           + +
Sbjct: 368 VEV 370


>gi|120612020|ref|YP_971698.1| phage integrase family protein [Acidovorax citrulli AAC00-1]
 gi|120590484|gb|ABM33924.1| phage integrase family protein [Acidovorax citrulli AAC00-1]
          Length = 394

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 50/307 (16%), Positives = 102/307 (33%), Gaps = 34/307 (11%)

Query: 50  ALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGD 108
           AL     KR    +       LKWL            +A ++R   +   D+ I+     
Sbjct: 59  ALEKQREKRRLTAAKNFGDVALKWLADA--------KMADSTRAMRKHVVDRDILPVFKS 110

Query: 109 FDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
               ++T   +R+     K    P++A+     ++ ++ +A+       NP   V     
Sbjct: 111 RLLNEVTADDLRALCNKVKARGAPATAVHVRDIVKQVYAFAILHGERVDNPANDVAAALI 170

Query: 167 KT--EGIRPWTKEDMQ-QFKSFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221
            T     R  +  +++  F+   S  + P  RLA   +L + +R S+   A    +    
Sbjct: 171 ATFVPKDRALSPTEIRLAFQQLESIATYPTIRLALRMVLLTLVRKSELIEATWSEIDFEN 230

Query: 222 FSIK----TQKTGTIITVELPDGFMKLLAMTPI--GKETFFINNDKQK------MNATQF 269
            +        K      V L    M +L           F + +  +           + 
Sbjct: 231 ATWTIPKQRMKGRNPHVVYLSRQAMDILVALHTCAAGSKFVLPSRYEPTRCMSHATLNRV 290

Query: 270 SIWFKAKATKAGVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKG 325
           +    ++A  AG+     + H +R+  +T+  + G     +      +    +   Y K 
Sbjct: 291 TQLIVSRAQAAGLPLGPFTVHDLRRTGSTLLNEVGFNGDWIEKCLAHEEGRSSRSIYNKA 350

Query: 326 --ADRIR 330
             A++ R
Sbjct: 351 EYAEQRR 357


>gi|12642607|gb|AAK00307.1|AF314191_1 integrase IntI6 [uncultured bacterium PG2]
          Length = 305

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 54/306 (17%), Positives = 93/306 (30%), Gaps = 62/306 (20%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           L+   R  A     ++ +  S+  +  + I        R +    IR  +       + A
Sbjct: 6   LLDNVRNVARLKHFSLRTERSYVYWIRRFILFHDKRHPRDMAEPEIRDFLSHLASHDNVA 65

Query: 134 ----IQFLTSMRVLFK--WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
                Q L+++  L++    +R  Y+       +ER KR T      T+ ++       +
Sbjct: 66  APTQNQALSALLFLYRDVLGIRLRYMD-----DIERAKRPTRVPTVLTRSEVLALLGKLT 120

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLL 245
                 +    L  SGLR  +  R  V+ L    N  +I+  K        LP      L
Sbjct: 121 --GTFYIMTSLLYGSGLRLMECLRLRVKDLDFHYNQITIRDGKGNKDRVTMLPAPLKPAL 178

Query: 246 ------------------------------------------AMTPIGKETFFINNDKQK 263
                                                      + P GK +    + KQ+
Sbjct: 179 ELHLKRVKLLHEEDLSGGFGEVFLPHALDRKYPNASREWAWQYVFPAGKRSIDPRSGKQR 238

Query: 264 M---NATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
               + +      K   ++AG+ K  S H +R   AT   + G     +    G K V  
Sbjct: 239 RHHVSESVLRRVVKDAVSRAGIAKPASCHTLRHSFATHLLEDGYDIRTVQELLGHKDVST 298

Query: 319 AETYTK 324
              YT 
Sbjct: 299 TMIYTH 304


>gi|188989765|ref|YP_001901775.1| tyrosine recombinase [Xanthomonas campestris pv. campestris str.
           B100]
 gi|167731525|emb|CAP49700.1| tyrosine recombinase [Xanthomonas campestris pv. campestris]
          Length = 327

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 45/309 (14%), Positives = 92/309 (29%), Gaps = 60/309 (19%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT---- 129
           L+ + R        ++ +  ++  +  + I  +G     ++    + + +          
Sbjct: 8   LLDQVRGRLRLRHYSLRTEQAYVGWIRRFILANGKRHPAQMGQAEVEAFLTDLATRGQVS 67

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINP-CLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
             +  Q L ++  L++  +  E     P   ++ R KR        + E++ +  +    
Sbjct: 68  AGTQNQALAALLFLYREILGLEL----PWMENLVRAKRPRRIPVVLSVEEVARLLTMLEG 123

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFM---- 242
               RL    L  SG+R  +  R  ++ +        ++  K G    V LP        
Sbjct: 124 AC--RLMAGLLYGSGMRLLECLRLRIKDVDMVRCEIVVRDGKGGKDRRVPLPRSLRGELM 181

Query: 243 -------------------------KLLAMTPIGK-----ETFFINNDK----------- 261
                                     L    P        +  F    +           
Sbjct: 182 QQRERALLLHAADLAEGAGQVFLPHALARKYPSADVEPGWQYLFPAARRSVDPRSGRVGR 241

Query: 262 QKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQA 319
             ++        +A   +AG++K A  H +R   AT   +AG     +    G K V   
Sbjct: 242 HHVSEEILQRAVQAARRRAGIDKPATCHTLRHAFATHLLEAGHDIRTVQELLGHKDVATT 301

Query: 320 ETYTKGADR 328
           + YT    R
Sbjct: 302 QIYTHVLGR 310


>gi|325300191|ref|YP_004260108.1| integrase family protein [Bacteroides salanitronis DSM 18170]
 gi|324319744|gb|ADY37635.1| integrase family protein [Bacteroides salanitronis DSM 18170]
          Length = 406

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 43/272 (15%), Positives = 99/272 (36%), Gaps = 28/272 (10%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIR------KSGDFDYRKIT---TKHIRSGVESR 126
           SEYR+  +    A  + + +E     +        K  D   + I           ++ +
Sbjct: 121 SEYRELMN-KEYAEGTVLRYERTARYLKEFISEQYKLADIPLKSINYEFITKFEHFIKIQ 179

Query: 127 KHTPSSA-IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           K+   +A +++L +++ + K A+ ++++  +P   +   K+         + ++++  + 
Sbjct: 180 KNCAQNATVKYLKNLKKIIKTALIKKWITDDPFAEI-HFKQTKCNREFLNEMELRKIINK 238

Query: 186 WSEGSQ---PRLAFEFLLYSGLRCSDSCRAGVQHL---QNNIFSIK--TQKTGTIITVEL 237
             +  +    R  F F  ++GL  +D      +HL    N  + I+   +KT  +  + L
Sbjct: 239 DFDIQRLQTVRDIFIFCCFTGLAFTDVKNLKKEHLVQADNGEWWIRKAREKTDNMCDIPL 298

Query: 238 PDGFMKLLAMTPIGKETFFINNDK---QKMNATQFSIWFKAKATKAGV--NKSAHGVRKF 292
            D    +L            N         +  + + + K  A   G+  N S H  R  
Sbjct: 299 LDIPRLILEKYQSN---PICNEKGLLLPVPSNQRMNSYLKEIADVCGIQKNLSTHIARHT 355

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324
            A+++     +   +    G   +     Y K
Sbjct: 356 FASLAIANKVSLESIAKMLGHTDIRTTRIYAK 387


>gi|317481412|ref|ZP_07940479.1| phage integrase [Bacteroides sp. 4_1_36]
 gi|316902397|gb|EFV24284.1| phage integrase [Bacteroides sp. 4_1_36]
          Length = 343

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 48/302 (15%), Positives = 100/302 (33%), Gaps = 42/302 (13%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHI---------RSG 122
           +SEY    H  +++ N+  S+   F Q I   +        ++  KH+         +  
Sbjct: 15  LSEYL--PHQRNVSKNTIASYRDSFVQFINYMKDINGIPVERLLLKHLTRDNVINYLQWL 72

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWA---VRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
             ++K+T ++    L ++R    +    V    V     LS++  K +       + E +
Sbjct: 73  HNTKKNTSATCNYRLAAIRSFCSYLQYIVIDNMVEWQSILSIKAKKTEISPPNYLSMEGI 132

Query: 180 QQFKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK---TQKTGTI 232
           +   +       +G +       +  +G R  +     V  ++ +        T K    
Sbjct: 133 KLLLAQPDTTSWKGRRHLALLSLMYDTGARVQEIADLTVDCVRIDTTPYTIRLTGKGRKT 192

Query: 233 ITVELPDGFMKLLAMTPIG---------KETFFINNDKQKMNATQFSIWFKAKATKAG-- 281
             V L +  + +L               K+  F N   +K+     +   K  A  A   
Sbjct: 193 RIVPLAEAQVDILRSYMEENNLNDPNMMKKPLFFNGRHEKLTREGITYILKIYADMANKQ 252

Query: 282 ----VNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR-IRLGIK 334
               + K  S H +R   A     AG     +    G  ++   + Y +   +  R  ++
Sbjct: 253 QPEIIPKKISCHSIRHSKAMHLLQAGVNLVYIRDILGHVSIQTTDIYARADSKAKREALE 312

Query: 335 NS 336
           N+
Sbjct: 313 NA 314


>gi|313646796|gb|EFS11254.1| integrase [Shigella flexneri 2a str. 2457T]
          Length = 371

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 44/215 (20%), Positives = 82/215 (38%), Gaps = 24/215 (11%)

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           ++    L+ ++ L + A  +E+  ++    ++ P+ K + IR     + Q+      E  
Sbjct: 144 ATKATHLSFIKALLR-AAEREWKMLDKAPIIKVPQPKNKRIRWLEPHEAQRLIDECPEPL 202

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGFMKLLA 246
           +     EF L +GLR S+      Q +         + +  K+   I V L D   ++L 
Sbjct: 203 KS--VVEFALATGLRRSNIINLEWQQIDMQRRVAWINPEESKSNRAIGVALNDTACRVLK 260

Query: 247 MTPIGKETFFINNDK--------------QKMNATQFSIWFKAKATKAGVNK-SAHGVRK 291
              IG    ++   K              +KM     + W KA   +AG++    H +R 
Sbjct: 261 KQ-IGNHHRWVFVYKESCTKPDGTKAPTVRKMRYDANTAW-KAALRRAGIDDFRFHDLRH 318

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
             A+    AG     L    GW++++    Y   A
Sbjct: 319 TWASWLVQAGVPLSVLQEMGGWESIEMVRRYAHLA 353


>gi|237727393|ref|ZP_04557874.1| site-specific recombinase [Bacteroides sp. D4]
 gi|313146590|ref|ZP_07808783.1| site-specific recombinase [Bacteroides fragilis 3_1_12]
 gi|229434249|gb|EEO44326.1| site-specific recombinase [Bacteroides dorei 5_1_36/D4]
 gi|313135357|gb|EFR52717.1| site-specific recombinase [Bacteroides fragilis 3_1_12]
          Length = 378

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 43/272 (15%), Positives = 99/272 (36%), Gaps = 28/272 (10%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIR------KSGDFDYRKIT---TKHIRSGVESR 126
           SEYR+  +    A  + + +E     +        K  D   + I           ++ +
Sbjct: 93  SEYRELMN-KEYAEGTVLRYERTARYLKEFISEQYKLADIPLKSINYEFITKFEHFIKIQ 151

Query: 127 KHTPSSA-IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           K+   +A +++L +++ + K A+ ++++  +P   +   K+         + ++++  + 
Sbjct: 152 KNCAQNATVKYLKNLKKIIKTALIKKWITDDPFAEI-HFKQTKCNREFLNEMELRKIINK 210

Query: 186 WSEGSQ---PRLAFEFLLYSGLRCSDSCRAGVQHL---QNNIFSIK--TQKTGTIITVEL 237
             +  +    R  F F  ++GL  +D      +HL    N  + I+   +KT  +  + L
Sbjct: 211 DFDIQRLQTVRDIFIFCCFTGLAFTDVKNLKKEHLVQADNGEWWIRKAREKTDNMCDIPL 270

Query: 238 PDGFMKLLAMTPIGKETFFINNDK---QKMNATQFSIWFKAKATKAGV--NKSAHGVRKF 292
            D    +L            N         +  + + + K  A   G+  N S H  R  
Sbjct: 271 LDIPRLILEKYQSN---PICNEKGLLLPVPSNQRMNSYLKEIADVCGIQKNLSTHIARHT 327

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324
            A+++     +   +    G   +     Y K
Sbjct: 328 FASLAIANKVSLESIAKMLGHTDIRTTRIYAK 359


>gi|198275454|ref|ZP_03207985.1| hypothetical protein BACPLE_01619 [Bacteroides plebeius DSM 17135]
 gi|255008845|ref|ZP_05280971.1| site-specific recombinase [Bacteroides fragilis 3_1_12]
 gi|198271083|gb|EDY95353.1| hypothetical protein BACPLE_01619 [Bacteroides plebeius DSM 17135]
          Length = 406

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 43/272 (15%), Positives = 99/272 (36%), Gaps = 28/272 (10%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIR------KSGDFDYRKIT---TKHIRSGVESR 126
           SEYR+  +    A  + + +E     +        K  D   + I           ++ +
Sbjct: 121 SEYRELMN-KEYAEGTVLRYERTARYLKEFISEQYKLADIPLKSINYEFITKFEHFIKIQ 179

Query: 127 KHTPSSA-IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           K+   +A +++L +++ + K A+ ++++  +P   +   K+         + ++++  + 
Sbjct: 180 KNCAQNATVKYLKNLKKIIKTALIKKWITDDPFAEI-HFKQTKCNREFLNEMELRKIINK 238

Query: 186 WSEGSQ---PRLAFEFLLYSGLRCSDSCRAGVQHL---QNNIFSIK--TQKTGTIITVEL 237
             +  +    R  F F  ++GL  +D      +HL    N  + I+   +KT  +  + L
Sbjct: 239 DFDIQRLQTVRDIFIFCCFTGLAFTDVKNLKKEHLVQADNGEWWIRKAREKTDNMCDIPL 298

Query: 238 PDGFMKLLAMTPIGKETFFINNDK---QKMNATQFSIWFKAKATKAGV--NKSAHGVRKF 292
            D    +L            N         +  + + + K  A   G+  N S H  R  
Sbjct: 299 LDIPRLILEKYQSN---PICNEKGLLLPVPSNQRMNSYLKEIADVCGIQKNLSTHIARHT 355

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324
            A+++     +   +    G   +     Y K
Sbjct: 356 FASLAIANKVSLESIAKMLGHTDIRTTRIYAK 387


>gi|90961894|ref|YP_535810.1| DNA integration/recombination/inversion protein [Lactobacillus
           salivarius UCC118]
 gi|90821088|gb|ABD99727.1| DNA integration/recombination/inversion protein [Lactobacillus
           salivarius UCC118]
          Length = 305

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/284 (14%), Positives = 93/284 (32%), Gaps = 31/284 (10%)

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
           R+K         ++      G+++  +   +      + + + D +  +IT    +  + 
Sbjct: 2   RRKRILFYNYFEDWINIYKVGAVSERTIDKYWLAHRHLKKLAPDLELGQITRIEYQKIIN 61

Query: 125 SRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLS--VERPKRKTEGIRPWTKEDMQ 180
               T   ++ + F   ++     A     +  +P     V+  K   +  +  ++ +++
Sbjct: 62  EFAETHEKATTMDFHHQLKSSILDAFDDGLINRDPTRKTVVKGKKPGKKKQKYLSEFELK 121

Query: 181 QFKSFWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSIKTQKT--------- 229
                   G++P L +  LL   +GLR  ++     +        I   KT         
Sbjct: 122 MLLRHLHLGTEPNLDWLILLVAKTGLRFGEALGLTKEDFDFENQIINISKTWDYKAARGG 181

Query: 230 -----------GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKAT 278
                         +  +L   F  LL   P G   F     K+++  +  +   K    
Sbjct: 182 FKSTKNKSSIRKVQLDWKLCMQFNTLLRDFPDGTPIFV----KKRVFNSTVNNRLKQYCE 237

Query: 279 KAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
           +  +   S HG+R   A++   AG +   +    G   +   + 
Sbjct: 238 ELAIPIISIHGLRHTHASMLLFAGVSIASVAKRLGHADMTTTQQ 281


>gi|319936580|ref|ZP_08010994.1| hypothetical protein HMPREF9488_01827 [Coprobacillus sp. 29_1]
 gi|319808378|gb|EFW04938.1| hypothetical protein HMPREF9488_01827 [Coprobacillus sp. 29_1]
          Length = 283

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 42/272 (15%), Positives = 84/272 (30%), Gaps = 23/272 (8%)

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
           RK+  TLK  I  ++        +  +   +            +                
Sbjct: 2   RKETITLKN-IESFKTELIEEEKSTATINKYIRDIQTFYNYLQEDKTITKECVVSYKLKL 60

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI----RPWTKEDMQ 180
           ++++ P S    L ++   F +          P   V+  K +        +  TKE+ +
Sbjct: 61  AKEYRPRSVNSMLVALNRFFVFLNI-------PECQVKLNKIQKSVFGDDNKEMTKEEYK 113

Query: 181 Q--FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
           +  F +      +  +  + +  +G+R S+     V  L+     I     G +  + LP
Sbjct: 114 RLLFAAKSKNNERLYMIIQTICATGIRVSEHKYITVDALKKGRAVII--NKGKVREIILP 171

Query: 239 DGFMKLL----AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRK 291
               +LL        I     F+    + M+ +      K+    A V+      H +R 
Sbjct: 172 IELKRLLLNYCKKQNIKCGPIFVTKGGKPMDRSNIWSSMKSLCEDARVDSQKVFPHNLRH 231

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYT 323
             A            L +  G  ++D    YT
Sbjct: 232 LFAITYYQLEKDLDTLASLLGHTSIDTTRIYT 263


>gi|70731154|ref|YP_260895.1| phage integrase family site specific recombinase [Pseudomonas
           fluorescens Pf-5]
 gi|68345453|gb|AAY93059.1| site-specific recombinase, phage integrase family [Pseudomonas
           fluorescens Pf-5]
          Length = 349

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/287 (13%), Positives = 86/287 (29%), Gaps = 30/287 (10%)

Query: 2   TPSLRLPP--FVTKERTRHGKII--YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPK 57
           T +  LPP  +V +   ++GK+   YY+    G+ + L        +    + L      
Sbjct: 6   TQNRNLPPRMYVRQRTRKNGKVWVSYYYLDPKGKEVTLGSDLSLARLK--WAELEAKDKP 63

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK 117
           ++           ++ +   Y +          ++    +   Q+     D     IT  
Sbjct: 64  QDLCL--------MRAIFDRYERDII-PKKGERTQKDNRAELRQLRPYFDDAPIDAITPS 114

Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI-NPCLSVERPKRKTEGIRPWTK 176
            I    ++R      A + + ++  +F  A      A  NPC  + + K           
Sbjct: 115 QIAQYRDARSAKVR-ANREIATLSHVFNMAREWGLTARENPCQGIRKNKETPRDFYA-ND 172

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
                         + ++A +    SG R +D        ++ +   +   KT   + + 
Sbjct: 173 AVWDAVYK--KAVQELKVAMDLAYLSGQRPADVLLMRKDDIEGSALGVVQNKTHKKLRII 230

Query: 237 LPDGFMK----------LLAMTPIGKETFFINNDKQKMNATQFSIWF 273
           L     +          L          F +  + +++  T     +
Sbjct: 231 LEVEGKETGLGALVQSILRRNESHSSPYFILTEEGRRVTTTMLRRRW 277


>gi|296163757|ref|ZP_06846462.1| integrase family protein [Burkholderia sp. Ch1-1]
 gi|295885996|gb|EFG65909.1| integrase family protein [Burkholderia sp. Ch1-1]
          Length = 334

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/277 (14%), Positives = 84/277 (30%), Gaps = 43/277 (15%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGD--------FDYRKITTKHIRSGVESRKHTPSSA--- 133
            +++  +  S+   F  +++                 ++   I + ++S +   ++A   
Sbjct: 24  RNVSPQTLWSYRDAFRLLLQFIDTTMHIEPVALSLTHLSPAVILAFLDSLEKERNNAVRS 83

Query: 134 -IQFLTSMRVLFKW-AVRQ----EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
               L ++R  F+W A+ +            L++   +     I   ++ ++        
Sbjct: 84  RNARLAAVRSFFRWVAISRPDFAGLSTS--ILAIPTKRTDRRLICALSRPEIDAILGAPD 141

Query: 188 E----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVEL-- 237
                G +       +  +G R S+        ++         +   K      V L  
Sbjct: 142 LSTPCGRRDHAMLLTMYNTGARVSEITSMACSQVELGGHSSFVHLH-GKGRKERCVPLWA 200

Query: 238 --PDGFMKLLAMT-PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---------KS 285
              D   K +     +     F N   +++         K  A   GVN          S
Sbjct: 201 ATADALTKWMREQNAVPTSLLFTNYRGEQLTRNGVDCILKK-AIAGGVNSCPSLSKKHIS 259

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
            H VR  +AT    AG     +    G +++D    Y
Sbjct: 260 PHVVRHATATHLLQAGVDISVIALWLGHESIDTTHIY 296


>gi|238059127|ref|ZP_04603836.1| integrase [Micromonospora sp. ATCC 39149]
 gi|237880938|gb|EEP69766.1| integrase [Micromonospora sp. ATCC 39149]
          Length = 333

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 36/269 (13%), Positives = 80/269 (29%), Gaps = 38/269 (14%)

Query: 85  GSLAVNSRISFESY------------FDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132
             L+ ++R ++                D +     D +      +   +    R  TP++
Sbjct: 34  RRLSEHTRDAYRRDVAGWLAWCRARQLDPLRANFLDVNAYGRELEATPAARSGRPLTPAT 93

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP--WTKEDMQQFKSFW---- 186
             + L+++   + + V+   +  NP  + +RP+   +       T +++    +      
Sbjct: 94  VARKLSALSSWYDFLVKLRAIEANPVTAADRPRVDRDHSSTVGLTPQEVDALLAAAQAES 153

Query: 187 -SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ---KTGTIITVELPDG-- 240
               ++ R A   L   GLR  +     +  L         +   K G      L     
Sbjct: 154 GPTAARNRAAVALLADLGLRVGELVSLDLADLGAERGHRSVRFVGKGGKPRRRALTPSTA 213

Query: 241 ------FMKLLAMTPIGKE----TFFINNDKQKMNATQFSIWFKAKATKAGVNK----SA 286
                   +  A   +G         +     +++        +  A  AG+      S 
Sbjct: 214 YAVDAYLAERAAAQGVGTHQLTGPLLVTATGARLDRHSVFRLVRRLARTAGIPAWAKLSP 273

Query: 287 HGVRKFSATISADAGATAHELMATYGWKT 315
           H +R   AT +   G    ++    G   
Sbjct: 274 HSLRHAFATTARAEGVPLEDVQDAMGHAD 302


>gi|255034748|ref|YP_003085369.1| integrase family protein [Dyadobacter fermentans DSM 18053]
 gi|254947504|gb|ACT92204.1| integrase family protein [Dyadobacter fermentans DSM 18053]
          Length = 412

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 43/269 (15%), Positives = 87/269 (32%), Gaps = 28/269 (10%)

Query: 85  GSLAVNSRISF---ESYFDQIIR---KSGDFDYRKITTKHIRSG----VESRKHTPSSAI 134
              A+ +   +     + +  ++    + DFD  +I    I          RK   ++ +
Sbjct: 128 QEYAIGTFKRYEVLRRHTESFLKANFNTTDFDISRIDFAFIADYEFHLRSVRKMGNNAVV 187

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQ 191
           + +   R +    +   +++++P L+ +  K K       TKE++             +Q
Sbjct: 188 KHMKMFRKIVNICLGNGWMSLDPYLNFK-GKFKKVDKAILTKEELCLLSEKEFASDRLTQ 246

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHL-----QNNIFSIKTQKTGTIITVELPDGFMKLLA 246
            R  F F  Y+GL  SD        +      +        KT     + L    + ++A
Sbjct: 247 VRDTFLFCCYTGLAYSDIQSLERSDIARGIDGDQWIFTHRTKTNVKSHIPLLPEALAIIA 306

Query: 247 MTPIGKETFFINNDKQKMNATQFSIW---FKAKATKAGVNK--SAHGVRKFSAT-ISADA 300
                 +     +    +            K  A   G++K  ++H  R   AT I+   
Sbjct: 307 RY---NDDPACESRGLVLPVPSNQKMNDYLKEIAVVCGIDKILTSHVARHTFATTITLQN 363

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRI 329
           G     +    G   +   + Y K  D  
Sbjct: 364 GVPIESVSKMLGHTNIRTTQIYAKILDLK 392


>gi|225374562|ref|ZP_03751783.1| hypothetical protein ROSEINA2194_00177 [Roseburia inulinivorans DSM
           16841]
 gi|225213622|gb|EEG95976.1| hypothetical protein ROSEINA2194_00177 [Roseburia inulinivorans DSM
           16841]
 gi|291524369|emb|CBK89956.1| Site-specific recombinase XerD [Eubacterium rectale DSM 17629]
          Length = 403

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 52/385 (13%), Positives = 102/385 (26%), Gaps = 73/385 (18%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKGH--GRRIRLPYPHESTFIPAYMSALTGSTPKREYI 61
             ++P +     T  G   Y  R     G+ + L            + A         + 
Sbjct: 5   KTQIPKY--GTITLKGIQYYRTRITDADGKELSLYAATCEELYEKQLEARKQVEEIIFHR 62

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIR 120
             P       KWL+ +   SA    ++ ++   +     + II+  G+    ++T   IR
Sbjct: 63  QHPTVAEYGEKWLLMQ---SAK---VSASTLRGYTRDMTNYIIKPLGEMYMEEVTADDIR 116

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGI-RPWTKED 178
             +             +  +     +A  + + +  NPC  +     K        T + 
Sbjct: 117 LALVPLSKKSEGLYNKVNMLLKCIFYAAERNQILEHNPCAGISGKGGKPTKKKEALTDQQ 176

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQ------- 227
           +         G  P L     LYSGLR  +        +         S++         
Sbjct: 177 VAVLLDTVK-GLPPYLFIMLGLYSGLRREEILALQWDCVFLDEDTPYLSVRRAWRTEHNR 235

Query: 228 -------KTG-TIITVELPDGFMKLLAMTPIG--KETFFINNDKQKMNATQFSIWFK--- 274
                  KT      + +P   +  L  T      +    ++  + + A+QF   ++   
Sbjct: 236 PVISTVLKTPAAKRDIPIPKCLVDCLRETKENSISDYVIADSKGEPLAASQFQRVWQYVV 295

Query: 275 ----------------------------------AKATKAGVNKSAHGVRKFSATISADA 300
                                                     + + H +R    T    A
Sbjct: 296 VRSTKPRNYYKYVNGQSIKYTVTPTLGMTQKNQPKIRYTLDFDVTPHQLRHTYITNLLYA 355

Query: 301 GATAHELMATYGWKTVDQA-ETYTK 324
           G     +    G +      + Y K
Sbjct: 356 GVDPKTVQYLAGHENSKTTMDIYAK 380


>gi|120602084|ref|YP_966484.1| phage integrase family protein [Desulfovibrio vulgaris DP4]
 gi|120562313|gb|ABM28057.1| phage integrase family protein [Desulfovibrio vulgaris DP4]
          Length = 372

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 49/312 (15%), Positives = 96/312 (30%), Gaps = 35/312 (11%)

Query: 40  ESTFIPAY----MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISF 95
              +  AY     S         +     RK   T+    + Y +   W     + +   
Sbjct: 46  SEGYTAAYASDVRSERVRDIRHGKSSPQGRKGELTINDAWALYLE--KWLHGKPSEQSDE 103

Query: 96  ESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYV 153
             Y   +    G      +    I         + +P +    L  +R +++        
Sbjct: 104 ALYRLWLAPAFGMKKMAGVRPVDIEEFKNRMLAQRSPQTVKHALGLLRRVYRKMAAWGEY 163

Query: 154 AIN-PCLSVERPKRKTEGIRPWTKED----MQQFKSFWSEGSQPRLAFEFLLYSGLRCSD 208
             + P +SV  PK     +R  T ++    ++  +      +   L     L++GLR  +
Sbjct: 164 KGDIPTVSVPMPKVDNGRLRFLTPDEAVRLVEALRKRSVLWADVSL---VSLHAGLRLDE 220

Query: 209 SCRAGVQH--LQNNIFSIKTQKTGTIITVELPD-----GFMKLLAMTPIGKETFFINNDK 261
                  H  + N +  +   K GT  TV L D        +  A     ++  F N + 
Sbjct: 221 ILGLQACHVDIDNRLLHVMDAKCGTR-TVPLADRGLCEMLRQRKAACSGAEDFVFKNRNG 279

Query: 262 QKMNATQFSIWFKAKATKAGVNKSA---------HGVRKFSATISADAGATAHELMATYG 312
           +++N    ++         G N            H +R    +  A  G   + +    G
Sbjct: 280 ERINNISQTVV--RVIQDLGFNHGITDRRHKVVFHTLRHTFGSWMAQRGVPLYVIGELMG 337

Query: 313 WKTVDQAETYTK 324
             T++    Y+K
Sbjct: 338 HSTLEMTRRYSK 349


>gi|29374816|ref|NP_813968.1| phage integrase family site specific recombinase [Enterococcus
           faecalis V583]
 gi|29342274|gb|AAO80040.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis V583]
 gi|315579391|gb|EFU91582.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0630]
          Length = 388

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 50/347 (14%), Positives = 100/347 (28%), Gaps = 44/347 (12%)

Query: 11  VTKERTRHGKIIYYF-------RKGHGRRIRLPYPHES--TFIPAYMSALTGSTPKREYI 61
           V  ++ + GK  YYF            R  ++     +      AY   +     +    
Sbjct: 2   VKFKKDKRGK--YYFTASLGFDEVTGKRVQKMRSGFSTIKEAREAYAEIINNFGKEAYSS 59

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121
           NS          +   Y K    G +   +  +  S              + I   HI+ 
Sbjct: 60  NSTMLYEEFFYTIFLPYYK----GRVKERTYNNRLSMIKNTFAYFFKMKLKSIAPVHIQK 115

Query: 122 GVESRKHTPSSA--IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
                     +          ++    AV    ++ NP   V   K+  + I  WTKE+ 
Sbjct: 116 WQNELLEQYENTYVRNIYGLFQMSLDRAVVLGMISSNPAKIVGNVKKSKKEIDFWTKEEF 175

Query: 180 QQFKSFWSEGSQ----PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------ 229
           ++    +           +    L  +G+R  ++     + +  +   +  +K+      
Sbjct: 176 EKVVKTFYVEDYYQNFSFICIWLLFMTGMRIGEATALTWKDVNLDRRYLTVKKSLYYKNA 235

Query: 230 -----------GTIITVELPDGFMKLLAMTP-----IGKETFFINNDKQKMNATQFSIWF 273
                       +I T+ L +  +  L         +G   F ++ +             
Sbjct: 236 QTYELVSPKTRASIRTIYLDEDTVHYLRDWKKRQDDVGGIEFILSYNSVPTQKHTVRHII 295

Query: 274 KAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
           K  A  A V +   H +R   A++    G  A  +    G + V   
Sbjct: 296 KRHAKLAEVHDIRIHALRHSHASLLISMGTNALLIKERLGHEDVQTT 342


>gi|303231738|ref|ZP_07318461.1| site-specific recombinase, phage integrase family [Veillonella
           atypica ACS-049-V-Sch6]
 gi|302513687|gb|EFL55706.1| site-specific recombinase, phage integrase family [Veillonella
           atypica ACS-049-V-Sch6]
          Length = 396

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 42/328 (12%), Positives = 97/328 (29%), Gaps = 60/328 (18%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS--------- 121
           +   I E+  +    S+   +   ++     I +        ++    +++         
Sbjct: 70  INEWIKEWLTTYVKNSVRPATYKVYKVTLAPIQKAFQGRRLDQLDPTQLQNFFNDQLIHG 129

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM-- 179
           G   +  +P +              A++      NP    + PK+      P ++ +   
Sbjct: 130 GHNQKGLSPYTVRNQRRYFAHCIDTALKLGLTTKNPVRLTKSPKQTKAENHPLSQYEAHN 189

Query: 180 ------QQFKSFWSEGSQPRLA--------FEFLLYSGLRCSDSCRAGVQHL-------- 217
                  + ++  S G   RL             L +G+R  +        +        
Sbjct: 190 LLQQAQDELEAAHS-GPIDRLMTTSDLYIGVYIALETGMRLGEIMALRWGDIVLDSYITV 248

Query: 218 -----QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI--------------GKETFFIN 258
                +    +I   KTG    +++    +  L                           
Sbjct: 249 QRSKSEIKEQNITLPKTGVGRKIQISQRLVNALTQHRAIQSNYKKELLGYYQDDHHIIGG 308

Query: 259 NDKQKMNATQFSIW-FKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKT 315
                 +A  +S   FK  + +AG+++    H +R   AT+   AG     +    G  +
Sbjct: 309 LQGNGYHARHYSSRLFKKLSQRAGIHRRVRFHDLRHTHATLLLLAGVNPKIVQERLGHAS 368

Query: 316 VDQA-ETYTKG--ADRIRLGIKNSRRIS 340
           ++   + Y+    AD+  + I    R++
Sbjct: 369 INVTLDIYSHVALADQA-VAINALDRLN 395


>gi|301299613|ref|ZP_07205874.1| putative phage tail component, N-terminal domain protein
           [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|300852800|gb|EFK80423.1| putative phage tail component, N-terminal domain protein
           [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 381

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 50/282 (17%), Positives = 97/282 (34%), Gaps = 51/282 (18%)

Query: 101 QIIRKSGDFDYRKITTKHIRSGVESRKHTP-SSAIQFLTSMRVLFKWAVRQEYVAINPCL 159
           +I+   G+    +ITT   +  +      P  +       +  +FK+A + + V  +P  
Sbjct: 98  KILPILGNKKINQITTIECQDLINHWYSIPLKNYKAIFNLITRIFKYAKQLKIVTDDPTS 157

Query: 160 SVERPKRKTE------GIRPWTKEDMQQFKSFWSEGSQ--PRLAFEFLLYSGLRCSDSCR 211
           SV  PK   +          +T+++++ F  +  +  +    + F  L +SG+R S++  
Sbjct: 158 SVIIPKASRQFSNLEYSRNYYTRDELKTFLEYAEKHEKYKIYVLFRLLAFSGIRKSEALA 217

Query: 212 AGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN------------ 259
                +  +   I   KT     + L          T     T FI+             
Sbjct: 218 LTWNDINFDKAQITINKT-----IILVSKVKVTTPKTKSSNRTVFIDKKTLSILSEWRLR 272

Query: 260 DKQKMNATQF-----------------------SIWFKAKATKAGVNK-SAHGVRKFSAT 295
            K+++    F                       S      +  + ++  + HG+R   AT
Sbjct: 273 QKKELLQKGFNALSPNQLIFPDKNNHYIIPTTISKMMNRVSEGSNLHHITVHGLRHTYAT 332

Query: 296 ISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNS 336
           ++A  G +  +L A  G   V+   + YT   D  R    N 
Sbjct: 333 LAAQGGMSVKQLQAQLGHSKVEITLDVYTSITDEQRKDTANQ 374


>gi|220919754|ref|YP_002495057.1| integrase family protein [Methylobacterium nodulans ORS 2060]
 gi|219952174|gb|ACL62565.1| integrase family protein [Methylobacterium nodulans ORS 2060]
          Length = 286

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/250 (15%), Positives = 69/250 (27%), Gaps = 11/250 (4%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLF 144
                +++  +     +     G            R  +       S A   L    + F
Sbjct: 20  RRFGEHTKRDYIRQIREFTIFLGRAPDLAEPEDLRRYQLHMASLGASYARMNLAITALRF 79

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGL 204
            + V            + R           + E++    +      + R A       GL
Sbjct: 80  FFHVTLGRSGF--ADRLARIPTPERLPVVLSPEEVALLLAHAPS-LKYRAALSVAYGCGL 136

Query: 205 RCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLA---MTPIGKETFFINN 259
           R S+     V  + +    I+    K      V L    + LL         +   F   
Sbjct: 137 RVSEIANLKVTDIDSARMLIRVEQGKGRKDRFVMLSPDLLDLLRQWWRVKRPRGWLFPGQ 196

Query: 260 D-KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTV 316
              Q +   Q +    A A  A ++K  S H +R   AT   +       +    G + +
Sbjct: 197 QPAQPITTRQLNRACHAAAEAARIDKRVSMHTLRHSFATHLLERKTDIRVIQVLLGHRKL 256

Query: 317 DQAETYTKGA 326
           D    YT+ A
Sbjct: 257 DTTAVYTRVA 266


>gi|119716520|ref|YP_923485.1| phage integrase family protein [Nocardioides sp. JS614]
 gi|119537181|gb|ABL81798.1| phage integrase family protein [Nocardioides sp. JS614]
          Length = 395

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 59/362 (16%), Positives = 111/362 (30%), Gaps = 63/362 (17%)

Query: 8   PPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK 67
           P +V   R   G+     R+   RR             A+ + +     +  Y++     
Sbjct: 15  PRYVVNYRDPEGRQ----RRKTFRR--------KAEAVAFRNTVEADKLRGTYLDVD-AG 61

Query: 68  PTTLKWLISEYRKSAHWGSLA-VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
             + +    E+  S  +  L    + +    +   +    G  + R+I    I+  + S 
Sbjct: 62  KISFRAYAEEWLDSRTFSPLTYEATELRLRLH---VFPTLGHLELRQIKPSTIQKLLRSM 118

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS--VERPKRKTEGIRPWTKEDMQQFKS 184
           +   +      +++  +F  AV  + +A NPC +  V RP      + PW  E +     
Sbjct: 119 EMAETYRRVIFSNVSAIFSAAVDDDMIAKNPCKASSVTRPATSRRKVVPWPTEWVSSMHD 178

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ--------------K 228
                 Q R+A       GLR  +     V+ +     +  ++ Q              K
Sbjct: 179 ALPP--QYRIAVTLGSGLGLRQGEVFGLAVEDVDFLRGVVEVRRQVKVFGGNRLVFGLPK 236

Query: 229 TGTIITVELPD----GFMKLLAMTPIGKET----------------FFINNDKQKMNATQ 268
                TV LP+         LA  P    T                     ++  +N   
Sbjct: 237 GDKTRTVPLPESVATELSNHLATYPRRSITLPWGTPQADKKASAGLILTTRERSALNRNY 296

Query: 269 FSIW-----FKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETY 322
           F+             +   +   H +R + A++  DAG +   +    G         TY
Sbjct: 297 FNTRLWKPGQAHVGIEQARDNGMHALRHWYASVLLDAGESIRAVSEYLGHSDPGFTLRTY 356

Query: 323 TK 324
           T 
Sbjct: 357 TH 358


>gi|324115571|gb|EGC09510.1| phage integrase [Escherichia coli E1167]
          Length = 387

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 84/220 (38%), Gaps = 24/220 (10%)

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +  + ++    L+ ++ L + A  +E+  ++    ++ P+ K + IR     + Q+    
Sbjct: 139 KPASVATKATHLSFIKALLR-AAEREWKMLDKAPILKVPQPKNKRIRWLEPHEAQRLIDE 197

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGF 241
             E  +     EF L +GLR S+      Q +         + +  K+   I V L D  
Sbjct: 198 CPEPLKS--VVEFALATGLRRSNIINLEWQQIDMQRRVAWINPEESKSNRAIGVALNDTA 255

Query: 242 MKLLAMTPIGKETFFINNDK--------------QKMNATQFSIWFKAKATKAGVNK-SA 286
            ++L    IG    ++   K              +KM     + W KA   +AG++    
Sbjct: 256 CRVLKKQ-IGNHHRWVFVYKESCTKPDGTKAPTVRKMRYDANTAW-KAALRRAGIDDFRF 313

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           H +R   A+    AG     L    GW++++    Y   A
Sbjct: 314 HDLRHTWASWLVQAGVPLSVLQEMGGWESIEMVRRYAHLA 353


>gi|257084635|ref|ZP_05578996.1| phage integrase [Enterococcus faecalis Fly1]
 gi|256992665|gb|EEU79967.1| phage integrase [Enterococcus faecalis Fly1]
          Length = 377

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 59/356 (16%), Positives = 111/356 (31%), Gaps = 57/356 (16%)

Query: 13  KERTRH---GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP-RKKP 68
               RH   GK +Y  R+G   + +               AL       E      +   
Sbjct: 20  AYVGRHPKTGKNVYRKRQGFKTKKQA------------QIALAEILKDIEENGLDNKHSV 67

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESR- 126
            T K L  ++       ++  ++      + ++ ++   GD     IT    +  V    
Sbjct: 68  LTFKQLYDKWLAQQR-LNVKPSTIALNRRFVERHVLPYIGDCLLSDITVIQCQDLVNEWF 126

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG--IRPWTKEDMQQFKS 184
                    F      + ++A   E +  NP      PKR  E   ++ +TKE++  F  
Sbjct: 127 NQGYKQYTYFRKVTAQIMRYAEAMEIMLSNPMSKTILPKRPKEEEKLKYYTKEELMHFFK 186

Query: 185 FWSE--GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----------------NNIFSIKT 226
              E    +    F  L ++G R S+      + L                 +N   I+T
Sbjct: 187 CLKEFGNFKQLAFFRLLAFTGCRKSEILSLQWKDLDLINKSVSIGKTLALDEDNNVIIQT 246

Query: 227 QKT-GTIITVELPDGFMKLLAM---------------TPIGKETFFINNDKQKMNATQFS 270
            KT  +  ++ L D  ++++                 T   ++  F N+  +       +
Sbjct: 247 PKTESSNRSISLDDETVRIMTKWRTIQRSDYFQMGFNTSSEEQYIFTNDRNELYYPQVVN 306

Query: 271 IWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
            W K    K  +   + H  R   A++   +G    E+    G K        Y+ 
Sbjct: 307 DWLKYLIKKYKLPIITPHHFRHTHASLLLQSGVPMKEVSERLGHKDTTITDRIYSH 362


>gi|24375372|ref|NP_719415.1| phage integrase family site specific recombinase [Shewanella
           oneidensis MR-1]
 gi|24350199|gb|AAN56859.1|AE015821_4 site-specific recombinase, phage integrase family [Shewanella
           oneidensis MR-1]
          Length = 310

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/274 (14%), Positives = 85/274 (31%), Gaps = 31/274 (11%)

Query: 85  GSLAVNSRISFESYFDQIIRKSG---DFDYRKITTKHIRSGVESRKH------TPSSAIQ 135
             LA NS+ S  S    I +      +   +++++ + +  ++ R        +  S  +
Sbjct: 12  SRLAPNSQRSIASQMRSIAQLMDWPDEVIGKQLSSINYQQAMQIRALLIHEQWSARSINR 71

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR---PWTKEDMQQFKSFWSE---- 188
            +T+++ + K A       +     +        G     P + E + +  +  S+    
Sbjct: 72  AMTAIKSIVKVAALMGEADMQQVAHINSIANMKHGAHQGNPLSAEQVTKLLALLSKRQDT 131

Query: 189 -GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFM--- 242
            G +    F   L +GLR S+     +       +   +   K      + LPD      
Sbjct: 132 YGLRTLAIFALFLGTGLRRSELAALTLADYDSATSTIKVVAGKGNKSRILFLPDWVEQHV 191

Query: 243 -KLLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGV-NKSAHGVRKFS 293
              L +  +       +          + ++        K K    GV   S H +R+  
Sbjct: 192 IAWLNVRKMQLGPLICHCRTTGIIVHYRPVSRDALYRLVKDKLGDIGVVGASPHDLRRTF 251

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
            T   +     + +    G   +     Y K  D
Sbjct: 252 ITRLLEQNVDINTVRQMAGHADISTTTIYDKRGD 285


>gi|315122001|ref|YP_004062490.1| phage-related integrase/recombinase [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495403|gb|ADR52002.1| phage-related integrase/recombinase [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 102

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 47/80 (58%), Positives = 62/80 (77%)

Query: 40  ESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF 99
           E  F+PAY+SAL+G   ++ YI   +K+P TL+W IS+YRKSAHW SL +NSR   + YF
Sbjct: 22  EPNFMPAYLSALSGIPIEQGYIKPQKKEPQTLRWFISQYRKSAHWASLTLNSRKRLDLYF 81

Query: 100 DQIIRKSGDFDYRKITTKHI 119
           DQII+KSGDF Y+K+T+KHI
Sbjct: 82  DQIIKKSGDFYYKKLTSKHI 101


>gi|310287306|ref|YP_003938564.1| Integrase/recombinase (XerD/RipX family) [Bifidobacterium bifidum
           S17]
 gi|309251242|gb|ADO52990.1| Integrase/recombinase (XerD/RipX family) [Bifidobacterium bifidum
           S17]
          Length = 239

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/213 (15%), Positives = 67/213 (31%), Gaps = 28/213 (13%)

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI--RPWTKEDMQQFKSFWSEGSQP--RL 194
            ++ +F +AV   ++  NP   V  PK  ++       +  +++       +  +P   L
Sbjct: 4   VLKGIFDYAVSNGWIGENPVDRVTVPKIASDDDDMVFLSVREVELLADEAEKIGKPVDGL 63

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQN----------------NIFSIKTQKTGTIITVELP 238
              +  Y+G R  +S    V  +                      + T K G    + +P
Sbjct: 64  LVRWQAYTGCRIGESLALKVGDVDAAKRRARIGRTWTDDGHGGSMLGTPKNGKARNIAIP 123

Query: 239 DGFMKLLAMT--PIGKETFFI--NNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRK 291
              M  +      +G + +                +  +      AG+     + H +R 
Sbjct: 124 RFLMPQIKAQMDGMGDDDWLFRATRGGNVWTNAWRTRIWNKAVKAAGMEDEGVTIHSLRH 183

Query: 292 FSATISADAGATAHELMATYGWKTVDQA-ETYT 323
             A+ +   GA A  L    G  +      TYT
Sbjct: 184 TYASFAIAQGADAKTLQMQLGHSSPSITLNTYT 216


>gi|304438155|ref|ZP_07398097.1| phage integrase family site-specific recombinase [Selenomonas sp.
           oral taxon 149 str. 67H29BP]
 gi|304368762|gb|EFM22445.1| phage integrase family site-specific recombinase [Selenomonas sp.
           oral taxon 149 str. 67H29BP]
          Length = 368

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 49/286 (17%), Positives = 88/286 (30%), Gaps = 40/286 (13%)

Query: 86  SLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVES-RKHTPSSAIQFLTSMRV 142
            L  ++  ++  + D+ I      +     +    I+  +          A+  L  +  
Sbjct: 74  KLEESTLTTYRRFLDKYILSIIPPNMKINDVKPALIKRVLSQITGDRTRQAVYTL--LHS 131

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202
           +FK A  ++ V  NP   + +PK         T E      S  S GSQ    F F   +
Sbjct: 132 IFKAAKFEQLVENNPMEFIRKPKHTATTTGIVTPEIYHALMSAVS-GSQIEHLFSFAWGT 190

Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---------------ITVELPDGFMKLLAM 247
           GLR  +           +   I   K                    TV L    ++ L  
Sbjct: 191 GLRRGEIVALHWSDFDADAAFIHVSKARNRGSKEYEGAPKTAYSVRTVTLSPAAVQNLLA 250

Query: 248 TP--------------IGKETFF--INNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289
                              +  F  + + +Q M  T  +  F     K  + K    H  
Sbjct: 251 WKKKLAEQLLSQGIRLTKDDYIFRSLKDVRQPMTLTALTHIFADLKEKLNLPKNLRFHSF 310

Query: 290 RKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADRIRLGIK 334
           R   AT+ A+   +A ++    G  +     + Y    ++++ GI 
Sbjct: 311 RHTHATMLAEQEISAKKIQLRLGHSSASFTMDRYVHNTEQMQEGIT 356


>gi|210619453|ref|ZP_03292039.1| hypothetical protein CLONEX_04273 [Clostridium nexile DSM 1787]
 gi|210148851|gb|EEA79860.1| hypothetical protein CLONEX_04273 [Clostridium nexile DSM 1787]
          Length = 288

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/268 (13%), Positives = 86/268 (32%), Gaps = 22/268 (8%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT-------TKHIRSGVESRKH 128
           + YRK      L  ++  S+ +Y         D  ++           + +R   ++R  
Sbjct: 6   NSYRKMISLRGLTDHTIKSYSTYILAYFDFLTDVIHKSPEDVTWDEMRQFVRWLQDTRSL 65

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           +  +    ++ +R    + + + +        +   K         ++++++ F S   +
Sbjct: 66  SDRTMNAVISQLRFFTIYVLHKPWD----ATQLPFRKFDNYLPYVPSQQEVKTFISTIPD 121

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN--IFSIKTQKTGTIITVELPDGFMKLLA 246
             + +     +  SGLR  + C    Q ++       I   K  +     L    +++L+
Sbjct: 122 -LKQKAMVSLMYSSGLRIGEVCHLKYQDIERRNMRIHISHGKNRSDRYALLSKTALEILS 180

Query: 247 M------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISA 298
                   P+        +  Q ++    S        + G  +    H  R    T   
Sbjct: 181 QYWFAYDKPVDWLFPKQRDKSQPIDTFYLSRHIHEHERRLGWPERITCHSFRHAFGTHLY 240

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGA 326
           + GA    + A  G K++     Y   A
Sbjct: 241 ENGADLLTIQAYLGHKSLASTSIYVHLA 268


>gi|323525511|ref|YP_004227664.1| integrase family protein [Burkholderia sp. CCGE1001]
 gi|323382513|gb|ADX54604.1| integrase family protein [Burkholderia sp. CCGE1001]
          Length = 575

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 58/339 (17%), Positives = 102/339 (30%), Gaps = 72/339 (21%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG-DFDYRKITTKHIRSGVESRKH 128
           T+   I  +        L+  +   ++  F  +    G +     +T  H R   E   H
Sbjct: 216 TVDEAIKRFENDPQREKLSRKNLNGYQHSFRLLREIVGGNMPLSAVTRDHAREVQEVLAH 275

Query: 129 TPSSAIQFLTSM-----------------------------RVLFKWAVRQEYVAINPCL 159
            P++A +  + M                                F WAVR+  +   P  
Sbjct: 276 LPANATKRFSGMTLVEAAEHAKKSGIPPISAKTAEVQLGNFSSFFSWAVREHLIDKTPAA 335

Query: 160 SVERP---KRKTEGIRPWTKEDMQQF---------KSFWSEGSQPRLAF-EFLLYSGLRC 206
            ++     + K EG +P+ + D+ +              +  S  R       LY G R 
Sbjct: 336 GLQALQAKRSKDEGRQPFGEADLVKLFSADLFREPYHRVAPRSLGRYWVPLLALYHGARL 395

Query: 207 SDSCRAGVQHLQNN----IFSIKTQ---------KT-GTIITVELPDGFMKL------LA 246
           ++ C+  V  +           + +         KT  +   + +     +L       A
Sbjct: 396 NELCQLEVSDVGVEDGVSFLHFREESAADEEKHLKTRNSERAIPIHPVLQQLGFVEYVDA 455

Query: 247 MTPIGKETFF--INNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAG 301
               G    F  +        +  FS WF   + + GV  S    H  R      +A A 
Sbjct: 456 TRKAGHVRLFPSLTKSANGYYSDNFSKWFGRFSDQCGVTDSRLAFHSFRHGF-RDAARAA 514

Query: 302 ATAHEL-MATYGWK--TVDQAETYTKGADRIRLGIKNSR 337
               E+  A  GW       +E Y KG    R   + ++
Sbjct: 515 DIPREIAQALGGWSDGDDSTSEDYGKGYTLSRKATELAK 553


>gi|270291392|ref|ZP_06197614.1| phage integrase [Pediococcus acidilactici 7_4]
 gi|270280238|gb|EFA26074.1| phage integrase [Pediococcus acidilactici 7_4]
          Length = 371

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/313 (12%), Positives = 97/313 (30%), Gaps = 44/313 (14%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHIRSGVE--SRK 127
                 ++  +    S+   ++ ++   ++ + +         +IT K  +  +    +K
Sbjct: 58  FPAYFYDWYLTYKEPSVTNRTKATYMQLYNVLKKSLLAKKPVGEITRKDYQRFINVFGKK 117

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP--KRKTEGIRPWTKEDMQQF--- 182
           H  S+  +F + +    K A+  + +  +    V     K KT  I     ++M      
Sbjct: 118 HAKSTVTKFNSLIHACVKDALYDKAIEKDFVYGVSMVFNKSKTRKIDYLNIDEMNTLSTY 177

Query: 183 -KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-------------NNIFSIKTQK 228
            +S  ++    +      +Y+G R  +      + +              +     +  K
Sbjct: 178 LRSSLNKHFTSKYMILTAIYTGARLGEIQALTWKDINTTFNTISIRRSWNDEEQKFQPTK 237

Query: 229 TGTIITV-ELPDGFMKLLAMTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGVNK- 284
             + + + ++ D   +LL        +   F N      +++  +   +      G++K 
Sbjct: 238 NESSVRIIKINDDLAQLLKQLKPKSSSTKIFTNQYGTVPSSSAVNKTLRESLAHCGIDKP 297

Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQAET-YT---------------KGA 326
               H +R                +    G   +      Y+               K  
Sbjct: 298 SFHFHSLRHTHVAYLLSENVDLFIISKRLGHSDISTTSRVYSYLIDEYKQKADLRIEKSL 357

Query: 327 DRIRLGIKNSRRI 339
           D+I L  KN R+I
Sbjct: 358 DKISLNSKNVRKI 370


>gi|325977913|ref|YP_004287629.1| phage integrase family site specific recombinase [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
 gi|325177841|emb|CBZ47885.1| phage integrase family site specific recombinase [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
          Length = 385

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 63/371 (16%), Positives = 120/371 (32%), Gaps = 51/371 (13%)

Query: 11  VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
           V   R   GK   YF+ G   R       E   +  Y    TG   +       R +   
Sbjct: 19  VRIYRVIDGKRHDYFKSGFKTR---REAKEHEAMI-YHKKSTGELSELLRAPERRFEEVF 74

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
            +W    Y+ +    + +V +   F  +   I+   G+F   KIT    +  +  +  T 
Sbjct: 75  EEWF-KTYQDTVE-RTTSVRTDDMFRLH---ILPTLGNFKISKITPWQCQEFITEKGKTF 129

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR-KTEGIRPWTKEDMQQFKSFWS-- 187
            +  Q  +    +F +AV+ + +A NP   V  PKR + +    +  +++ +F +     
Sbjct: 130 RNIKQVKSYTNQVFSFAVKMKLIAENPMRDVTLPKREQKQSDNFFNVDELHEFLAIVKVE 189

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK-----TGTII--------- 233
           E  +    F  L YSGLR  +        +  +   +   K      G  +         
Sbjct: 190 EPYKNYALFRLLAYSGLRKGELYSLRWSDMNFDKQILSVTKNLGRIKGKAVEKSTKNRFS 249

Query: 234 --TVELPDG----FMKLLAMTPIGKETF-------------FINNDKQ--KMNATQFSIW 272
              + L         +    +   K                F++ D +   +     +  
Sbjct: 250 VRQIPLDAETTAILREWKQQSKKEKGQLSVTPLIDNDYMFTFVDRDGKIQPLYQDYINSI 309

Query: 273 FKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIR 330
            K    K  + K + HG R   AT+  + G          G  +     +TY+   +   
Sbjct: 310 LKRIINKHNLKKITPHGFRHTHATLMIEVGVDPVNAAKRLGHASSQMTLDTYSHATEAG- 368

Query: 331 LGIKNSRRISS 341
            G +  ++ + 
Sbjct: 369 -GEQTIKKFAD 378


>gi|254498110|ref|ZP_05110867.1| phage related integrase [Legionella drancourtii LLAP12]
 gi|254352676|gb|EET11454.1| phage related integrase [Legionella drancourtii LLAP12]
          Length = 410

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 46/305 (15%), Positives = 101/305 (33%), Gaps = 30/305 (9%)

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121
            + +    TL+ ++++Y K+     L   +   ++    +++    D     IT + I  
Sbjct: 97  KTKKVHAMTLQQVLNDYLKTR--KDLKPRTLNDYQCVLHEVVPDWLDKPLVNITREMIAK 154

Query: 122 GVES--RKHTPSSAIQFLTSMRVLFKWAV-------RQEYVAINPCL---------SVER 163
                 + ++ + A   +  +R +F +A+           + INP            V+R
Sbjct: 155 RHTKHGQANSKARANNAMRVLRAIFNYAMYEYQDGNGHPIITINPVKYLSHTRAWYRVDR 214

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA---FEFLLYSGLRCSDSCRAGVQHLQ-- 218
            +   +  +                     L    F  LL++G+R  ++     + +   
Sbjct: 215 KQTVIKPHQLADWYKAVIILVETDNYRNALLWHDYFLLLLFTGMRKMEAASLRWEDIDLK 274

Query: 219 NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET--FFINNDKQKMNATQFSIWFKAK 276
           +   +++  K   I T+ + D   +L+      K +   F    K               
Sbjct: 275 SKTITLQDTKNREIHTLPMSDFVYELMERRSRNKTSEFVFPAESKTGYIYEP-KKAVNRV 333

Query: 277 ATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWK--TVDQAETYTKGADRIRLGIK 334
              +GV  + H +R+  ATI+      A+ L      K      A    K  +R+R  ++
Sbjct: 334 VELSGVPFTLHDLRRTFATIADSLDLPAYALKRLLNHKMNNDVTAGYIMKDVERLRKPMQ 393

Query: 335 NSRRI 339
                
Sbjct: 394 QVANF 398


>gi|145298902|ref|YP_001141743.1| phage integrase family site specific recombinase [Aeromonas
           salmonicida subsp. salmonicida A449]
 gi|142851674|gb|ABO89995.1| site-specific recombinase, phage integrase family [Aeromonas
           salmonicida subsp. salmonicida A449]
          Length = 421

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 45/287 (15%), Positives = 99/287 (34%), Gaps = 26/287 (9%)

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF---D 110
            +P     ++   +   L   +  Y       S A     + ++Y +  I   GD    +
Sbjct: 119 ESPVVPSEHTSPDQEEKLSGHVESYITEKQ-LSWAPKETKNQQNYINTFIENVGDKCLSE 177

Query: 111 YRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170
           Y K      ++ +     +P++  +++  + +LF W         +    ++  + K   
Sbjct: 178 YTKADAVAFKTWLLGSGKSPTTINKYIQKLSLLFSWLADHTEQTTDIFKGLKLKRVKEVN 237

Query: 171 IRP-WTKEDMQQFKSFWSEGSQPRLAFEFLL--YSGLRCSDSCRA---GVQHLQNNI-FS 223
           +R  +T  +++QF   W++  +P   F  ++  Y GLR +++C+     ++ +     F+
Sbjct: 238 VRSGYTDPELKQF-DVWAKEQEPWRMFIAMIGRYHGLRSNEACQLYSDDIEQVNGVWCFN 296

Query: 224 IKTQKTG-------TIITVELPDGFMKL--LAMTPIGKETFFINN--DKQKMNATQFSIW 272
           I+  +         +   V +    +    L      K          +    +  F  W
Sbjct: 297 IRATRKDQSLKTEASQRLVPIHSKLLAAGFLDFVASRKVGRLFKELPYRNNSYSHLFGQW 356

Query: 273 FKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
           F        V+K  H +R   A+    AG       A  G      +
Sbjct: 357 FSRNRP---VDKDFHSLRHTVASKLKAAGIPLQYAAAILGHTNKAIS 400


>gi|557887|gb|AAA50502.1| integrase [Bergeyella zoohelcum]
 gi|1098132|prf||2115270D integrase
          Length = 259

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/242 (15%), Positives = 76/242 (31%), Gaps = 19/242 (7%)

Query: 102 IIRKSGDFDYR-KITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
           +    G           H       +K    S   F  ++  L ++ ++ E ++ +  LS
Sbjct: 1   MSLHFGKIPTELDPEQIHDYLFYLQKKSKSPSQSYFKHTVYGL-RFLLKSEGLSYD-FLS 58

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH--LQ 218
           +   KR+ +     +K+++ Q  S      + ++    L   GLRC +     +      
Sbjct: 59  LPEIKREKKLPVVLSKQEVWQMLSGCKL-LKHKILIGILYGCGLRCMEVRNLRLCDLDFD 117

Query: 219 NNIFSIKTQKTGTIITVELPD----GFMKLLAMTPIGKETFFINNDKQ-------KMNAT 267
                +   K      + L +    G  K +         F      +       + +  
Sbjct: 118 RKQLKVVQGKGKKDRYLPLSEHLIRGLKKYIEAEKPEDYLFGEPRGNRAGGEFDSRYSQR 177

Query: 268 QFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
                 K  +  A + K  S H +R   AT   + G     +    G +++D    Y + 
Sbjct: 178 GVQWAVKQASKTANILKEVSVHTLRHSFATHLLEDGMDILSIKNLLGHESIDTTLIYLQI 237

Query: 326 AD 327
           A 
Sbjct: 238 AQ 239


>gi|227515184|ref|ZP_03945233.1| integrase XerD [Lactobacillus fermentum ATCC 14931]
 gi|227086516|gb|EEI21828.1| integrase XerD [Lactobacillus fermentum ATCC 14931]
          Length = 292

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/278 (11%), Positives = 88/278 (31%), Gaps = 24/278 (8%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGVES 125
             L +       W +    ++++  SY   +   +      G  +++++    + + ++S
Sbjct: 6   DALQASLVSYQEWLTKKGGAKLTIASYLTDLRDTAAYLTSRGVTNWQQVDRATLTAYLQS 65

Query: 126 RKHTPS---SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
                    +  + ++S+R  + +      V  +P   ++  +         T ++    
Sbjct: 66  LNDKGRRTTTIQRRISSLRRFYAYLQVTGQVNHDPVALLKAKQTPRLAPVGLTPQEADLL 125

Query: 183 KSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
                       + R     L+ +G R ++        L   +  +   ++   + V L 
Sbjct: 126 PDHVPGKGVARERNRALVALLVATGARANELRDLQTGDLDLELGVVYLGQSSRRL-VPLN 184

Query: 239 DGFMKLL--------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288
           +     L          +   +   F+NN  Q ++         A   +A +    +   
Sbjct: 185 EQAQTYLTTYLTARADQSATDEGYVFLNNRGQPLSRQSIWEIVNATGQRANIEGAVTPQR 244

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           VR   A      GA    +    G +++   + Y + A
Sbjct: 245 VRDGFAYRLLAHGADLSLVQQLMGHQSILTTQVYLEQA 282


>gi|194466593|ref|ZP_03072580.1| integrase family protein [Lactobacillus reuteri 100-23]
 gi|194453629|gb|EDX42526.1| integrase family protein [Lactobacillus reuteri 100-23]
          Length = 370

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 51/297 (17%), Positives = 107/297 (36%), Gaps = 39/297 (13%)

Query: 70  TLKWLISEYRKSAHWGSL-AVNSRISFESYFDQIIRKSG-DFDYRKITTKHIRSGVE--- 124
           TL  LI E+     + ++   ++ I+ +S    I    G D     I    + + ++   
Sbjct: 68  TLGELIDEWL--PIYKTMVKEHTYINNKSRATIIRNTLGEDVLVANIKPVLLSNYLDDLI 125

Query: 125 -SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI-----RPWTKED 178
             + +  SS  +F  ++  L ++A +  Y+  NP    +   +K+        + + +E+
Sbjct: 126 YKKNYKNSSVQKFKGTLGNLLRYAKKHNYIKTNPIKEADVNYKKSSAADKIEEKYFDEEE 185

Query: 179 MQQFKSFWSEGSQPRLAF-EFLLYSGLRCSDSCRAGVQHL---QNNIFSIK----TQKTG 230
           + +   +  + S     F EFL  +GLR  ++       +        ++       K  
Sbjct: 186 LNKILKYMYKRSPHYGRFCEFLYQTGLRFGEAAALIPNDIIEKDGKQVAVINSTLVNKKK 245

Query: 231 TI--------ITVELPDGFMKLLA-MTPIGKETFFINNDKQ---KMNATQFSIWFKAKAT 278
                       V LP   ++++         T FI +  +    MN T  + W +    
Sbjct: 246 QPSPKTAKSNRDVTLPKRALEIIHDEEKEANGTQFIFSSGRYGYPMNNTTLNDWLREAKK 305

Query: 279 KAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TY---TKGADRI 329
           +  + K  + H  R    +  A+ G   + +    G K     +  Y   TK A++ 
Sbjct: 306 ELNIQKITTVHTFRHTHISKLAELGVPLYLIQNRVGHKDATTTKDIYLHVTKKAEQQ 362


>gi|146337601|ref|YP_001202649.1| putative phage related integrase [Bradyrhizobium sp. ORS278]
 gi|146190407|emb|CAL74406.1| putative phage related integrase [Bradyrhizobium sp. ORS278]
          Length = 429

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 61/367 (16%), Positives = 117/367 (31%), Gaps = 50/367 (13%)

Query: 25  FRKGHGRRIRLPYP-----HESTFIPAYMSALTGSTPKREYINSPRKKPT--TLKWLISE 77
           +R  +GR  RL                   AL       +   + +      T++ L  E
Sbjct: 51  YRNANGRSRRLTIGRFGVLTVEEARKEAKLALGNVVRGSDPAEARKLARGAMTIQDLARE 110

Query: 78  YRKSAHW--------GSLAVNSR-ISFESYFDQIIRKSGDFDYRKITT----KHIRSGVE 124
           Y + A             +  +           II   G    +  T     + +R  + 
Sbjct: 111 YLEKAERGLILTRGGKGKSETTLYTDRGRVERHIIPLIGKRTIKDFTASDAGRFLRDVIA 170

Query: 125 SRKHT----------------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168
            +  T                  +A +    +  +F +AV + Y   NP   + RPK +T
Sbjct: 171 GKSATDVKTEKKRGRAIVTGGKGTAARTAGLLGGIFSYAVAEGYRPDNPVSGLRRPKDET 230

Query: 169 EGIRPWTKEDM-----QQFKSFWSEGSQ--PRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221
              R    ++      +  ++  + G+     LA      +G R  +        L    
Sbjct: 231 REWRL--DDEGYRRLGKALETAEANGAHWQRVLACRAAALTGCRLDEIQGLLKSELDTKG 288

Query: 222 FSIKTQ--KTGTII-TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKAT 278
            +++    KTG  +  +      + + A      +  F +      + T  + W +  A 
Sbjct: 289 MALRLGDSKTGKSVRPIGSAAVAVLVAASDKSKSKYVFPSITSDAKHHTGLTRWLQDIAG 348

Query: 279 KAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338
           KA    ++HG+R   ++ + D G +   + A  G       E Y    D   L    + R
Sbjct: 349 KAVPGITSHGLRHSYSSTAEDLGFSIPTIKALIGHSRASVTEGYIHKIDSALLA--AADR 406

Query: 339 ISSVVDS 345
           I+S +D+
Sbjct: 407 IASHIDN 413


>gi|313609398|gb|EFR85005.1| phage integrase [Listeria monocytogenes FSL F2-208]
          Length = 359

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 59/354 (16%), Positives = 108/354 (30%), Gaps = 51/354 (14%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
           +P +  +++       YY      R  +L    ++                   + S   
Sbjct: 1   MPAYRDEDKGNWFVSFYYQDWKGKRVKKLKRGFKTKKEAQEW-------ENNFKLQSENN 53

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVES 125
                K  +S Y KS     +  N+ IS E   + +II   G+    +I    I      
Sbjct: 54  LDMKFKDFVSMY-KSDIKTRVKYNTWISKEYIINLKIIPAFGERKINEIKPSDIIQWQNE 112

Query: 126 R---------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE--RPKRKTEGIRPW 174
                       +P+        +  +F  AVR   +  NP  +V     K+  + +  W
Sbjct: 113 LIGYRNDRGEGFSPTYLKAIHNQLTAIFNHAVRFYDLKSNPARTVGCMGSKKSDKEMLVW 172

Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---------------- 218
           TKE+  +F     +      AFE L + G+R  +                          
Sbjct: 173 TKEEYIKFSDSMMDKDISFHAFEILYWCGIRVGELLALTPSDFNFEEGTVSITKSYQRIK 232

Query: 219 -NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG------KETFFINNDKQKMNATQFSI 271
             +I +    + G  I + +PD  +  +            K   F       +       
Sbjct: 233 GEDIITTPKTEKGKRI-INMPDFLVDEMQDYISRLYGCKPKSRIF------PITKAVLYS 285

Query: 272 WFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             K  AT+  + K   H +R    ++  D G +A  +    G +++D    Y  
Sbjct: 286 EMKRGATEQNIKKIRIHDLRHSHVSLLIDMGFSAVAIADRVGHESIDITYHYAH 339


>gi|91212010|ref|YP_541996.1| hypothetical protein UTI89_C3009 [Escherichia coli UTI89]
 gi|117624890|ref|YP_853803.1| hypothetical protein APECO1_3866 [Escherichia coli APEC O1]
 gi|218559644|ref|YP_002392557.1| hypothetical protein ECS88_2917 [Escherichia coli S88]
 gi|237706730|ref|ZP_04537211.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|91073584|gb|ABE08465.1| hypothetical protein UTI89_C3009 [Escherichia coli UTI89]
 gi|115514014|gb|ABJ02089.1| conserved hypothetical protein [Escherichia coli APEC O1]
 gi|218366413|emb|CAR04165.1| conserved hypothetical protein [Escherichia coli S88]
 gi|226899770|gb|EEH86029.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|294489504|gb|ADE88260.1| phage integrase [Escherichia coli IHE3034]
 gi|307625776|gb|ADN70080.1| hypothetical protein UM146_03320 [Escherichia coli UM146]
 gi|315284905|gb|EFU44350.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 110-3]
 gi|323951124|gb|EGB47000.1| phage integrase [Escherichia coli H252]
 gi|323957134|gb|EGB52859.1| phage integrase [Escherichia coli H263]
          Length = 390

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 54/282 (19%), Positives = 97/282 (34%), Gaps = 32/282 (11%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
               T+K  + EY +      L+ ++   ++     +          ++T   +++ ++S
Sbjct: 87  AASKTVKMYLDEYLEICETRKLSPSTIGGYKKCRSALASLH-ICPASELTPATLKAWIQS 145

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR--------PWTKE 177
           +K T  +    L+ +R     AV    + INP   V   + +++           P +  
Sbjct: 146 QKTTLKTIRNQLSFLRSALDEAVTDGVLQINPVSLVTASRYQSDKSEAESSYVVDPLSPA 205

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-------------NNIFSI 224
           ++    +         L F F +++GLR S+ C      +                +   
Sbjct: 206 EVDALLAAAGNKQWENL-FRFAIHTGLRSSELCALRWHDIDFVGKTAHVQSASVVGVIKG 264

Query: 225 KTQKTGTIITVELPDGFMKLL----AMTPIGKETFFINNDKQKMNATQFSIWFKAKA--- 277
              K GT   VEL +  M  L      T +   T F +    K  A+  +I  KA     
Sbjct: 265 TKTKAGTR-KVELTEEAMLALINQKPFTFMKDATVFEDPKTNKPWASADAIRKKAWVPTL 323

Query: 278 TKAGVNKS-AHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
            KAG+     +  R   AT     GA    L A  G K  + 
Sbjct: 324 RKAGIRYRNPYQTRHTFATSHISRGANLFWLAAQMGHKGPEM 365


>gi|94310217|ref|YP_583427.1| phage integrase [Cupriavidus metallidurans CH34]
 gi|93354069|gb|ABF08158.1| tyrosine-based site-specific recombinase [Cupriavidus metallidurans
           CH34]
          Length = 331

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 36/301 (11%), Positives = 89/301 (29%), Gaps = 48/301 (15%)

Query: 67  KPTTLKWLISEYR--KSAHWGSLAVNSRISFESYFDQIIR-------------KSGDFDY 111
              +L  L+  +   +      L+ ++  S+   F  ++              +  DFD 
Sbjct: 2   SAASLPALVQRFFTQRLLEQQGLSSHTVASYRDTFRLLLAFATKHIGRAPSKLRIEDFDV 61

Query: 112 RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL--------SVER 163
             I  + ++     R ++  +    L ++   F++          P L        ++  
Sbjct: 62  SLIE-EFLQHLEHGRGNSVRTRNTRLAAVHAFFRF-----VAVSEPALFLLCQRILAIPS 115

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN 219
            + +   +   T+ +              G++ R      + +GLR S+      Q +  
Sbjct: 116 KRCEHGPVEFLTESEAAALVGAPDVRNWIGNRDRTLLLVAVQTGLRNSELTALRRQDVAL 175

Query: 220 NIF-SIKTQKTGTIITV-ELPDG----FMKLLAMTPIG-KETFFINNDKQKMNATQFSIW 272
                ++    G  +    L         + L   P    +  F ++    ++A      
Sbjct: 176 GTGAHVRCLGKGRKMRCTPLRPDVVAVLKQWLLYQPGEPGDPVFPSSRGGHLSADALQQL 235

Query: 273 FKAKATKAGVNK--------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
               A  A ++         + H +R  +A      G     +    G ++ +  + Y  
Sbjct: 236 VSRNAETARLSCPSLKKKSITPHTLRHTAAMSLMHHGVDLTVIALWLGHESSETTQIYLH 295

Query: 325 G 325
            
Sbjct: 296 A 296


>gi|293433077|ref|ZP_06661505.1| integrase bacteriophage origin [Escherichia coli B088]
 gi|291323896|gb|EFE63318.1| integrase bacteriophage origin [Escherichia coli B088]
          Length = 346

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/280 (13%), Positives = 80/280 (28%), Gaps = 34/280 (12%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
           K   TL  LI+ +        +A+++    ++         G     +   +   +    
Sbjct: 60  KDKRTLIDLITMWY---ERHGVALSNGEKRKNAMTWAAECMGFPLATEFNAQLFTAYRAK 116

Query: 126 RKHTPSSAIQFLTSMR------------VLFKWAVRQE-YVAINPCLSVERPKRKTEGIR 172
           R     +    ++ +              +F    R   + A NP  +V + +     + 
Sbjct: 117 RLDGHYARTNRVSKVSPKTMNLEHAYFLAMFNELKRIGEWSAPNPLENVRQYRTDETEMA 176

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAF--EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
             T E++ +            L    +  L +G R +++       +     +    K  
Sbjct: 177 FLTTEEIDRLLLECKRSKVKYLELVVKICLATGARWNEAATLKSSQITGGKVTFVKTKGK 236

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA---- 286
              T+ L D  +  L  T            K  +        F++   +AG+   +    
Sbjct: 237 RNRTIPLDDELLSELPET------------KGALFPKPCYNAFRSALERAGIELPSGQLT 284

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           H +R   A+     G     L    G   +     Y   A
Sbjct: 285 HVLRHTFASHFMMNGGNILVLQKILGHADITMTMRYAHFA 324


>gi|262046043|ref|ZP_06019007.1| prophage integrase [Lactobacillus crispatus MV-3A-US]
 gi|260574002|gb|EEX30558.1| prophage integrase [Lactobacillus crispatus MV-3A-US]
          Length = 393

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 48/341 (14%), Positives = 106/341 (31%), Gaps = 50/341 (14%)

Query: 46  AYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK 105
           A   A      + +  +  ++K   +  L   + K+        ++   F +Y   I   
Sbjct: 47  AEAEAAYNKMSQIKADDFVKQKQIKVNELFELWFKTYKETVKPQSASRVFVNYKHHINPY 106

Query: 106 SGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165
            G+     I  K ++   +       +    ++ MR L+++ +R  Y++ N    +  PK
Sbjct: 107 FGNNYMDSILVKDLQKWADKLATELVNYRPVISIMRSLYEYGMRLGYISDNSISRIIIPK 166

Query: 166 RKTEGIR-----PWTKEDMQQFKSFWS-EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ- 218
           + T   R      ++KE++  F              F+ L  +G+R  ++       +  
Sbjct: 167 KTTRKRRNVEDNVYSKEELDTFLDVAKQVNQCVYTYFKLLASTGMRKGEALALTWNDIDL 226

Query: 219 --------------NNIFSIKTQKTG-TIITVELPDGFMKLL----AMTPIGKETFFINN 259
                         ++   + + KT  +  ++ L     ++L        I     F   
Sbjct: 227 VNNTISVNKTLTSVDHKLILSSPKTKNSRRSIPLSANLKQVLLDHRKSEKIVSVKLFHRL 286

Query: 260 DKQKMNATQFSIWFKA----------------------KATKAGVNKSAHGVRKFSATIS 297
           +    + +Q   W +                          K   + S HG R   AT+ 
Sbjct: 287 NGNYWSLSQPGDWLRDVYAKDHALNVKYAKKYKLDDSYVRAKDLRHISIHGFRHTFATLL 346

Query: 298 ADA-GATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNS 336
            +        +    G   +    + YT   ++ +    NS
Sbjct: 347 IENTNVKPKTVQMLLGHANIKMTLDIYTHINNKNKEDAINS 387


>gi|45358306|ref|NP_987863.1| integrase/recombinase [Methanococcus maripaludis S2]
 gi|44921064|emb|CAF30299.1| Probable integrase/recombinase [Methanococcus maripaludis S2]
          Length = 324

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/298 (13%), Positives = 101/298 (33%), Gaps = 32/298 (10%)

Query: 74  LISEYRKSAHWGSLAVNSRI---SFESYFDQIIRKSGDFDYRKITTKHIR--SGVESRKH 128
            I ++++   + ++  ++     +    F     + G   Y   T   +   + + +R++
Sbjct: 26  YIKKFQEEREFDNIKPSTIKNDVTSLKVFLAFCEEIGKEPYSLTTHDFVIFFNMLNNRRN 85

Query: 129 -TPSSAIQFLTSMRVLFKWAV-------RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
            T  +  ++   ++V ++           +E +        E+    T     + +   +
Sbjct: 86  CTVRTQNRYFNLLKVFYRLLKYVNFKEFERESIERKRFSKFEKKHYDTINFDTYNRIIKE 145

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH--LQNNIFSIKTQKTGTIITVELP 238
              S      +  L    L  +G R S++     +    +   F I+  KT    TV + 
Sbjct: 146 IILSNSRTRLRDALIVRVLWETGCRRSEALSIRYKDCDFEKGRFRIRDTKTYEERTVVIA 205

Query: 239 DGFMKLLA------MTPIGKETFFIN---NDKQKMNATQFSIWFKAKATKA--------G 281
           +  ++++       +     +  F N    + +++     +  FK    K         G
Sbjct: 206 EETVEIVRDYIKENIKRDSNDYIFQNEMIQNGKRVKLDWITNVFKKAVRKLKEEGVIPEG 265

Query: 282 VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
                H +R   AT   D G     +    G ++++    Y+   +R    + N +++
Sbjct: 266 KRIVIHSLRHGRATDLLDKGVPIDVVKEILGHRSLETTLYYSHSKERKNGMLDNIQKL 323


>gi|150019809|ref|YP_001312063.1| phage integrase family protein [Clostridium beijerinckii NCIMB
           8052]
 gi|149906274|gb|ABR37107.1| phage integrase family protein [Clostridium beijerinckii NCIMB
           8052]
          Length = 323

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/291 (13%), Positives = 87/291 (29%), Gaps = 28/291 (9%)

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRIS----FESYFDQIIRKSGDF 109
           +  K       +    T+     EY     +      +  S    ++    ++I    D 
Sbjct: 2   ARIKLRAFREVKNYTRTVSDCYMEYMNYCKYRGQREGTIKSKEGFYKYVLPKMISVDEDI 61

Query: 110 D--YRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167
                 +   H+ S ++ R     +   F+  ++    +  +++Y+       V+ P   
Sbjct: 62  TKITESMVLIHVNSMID-RGLKGGTYSTFVVKLKAFLTYCFKRKYLQE---FEVKIPNVV 117

Query: 168 TEGIRPWTKEDMQQFKSFWSEGS------QPRLAFEFLLYSGLRCSDSCRAGVQHL--QN 219
            E    +T++++    +  +  +      +  +   F + +G R        V+ +  + 
Sbjct: 118 LEKKAVYTEDEINILLTKPNLNTCVIGDYRSYVMIAFFVGTGCRSETILNVRVKDINFEK 177

Query: 220 NIFSIKTQKTGTIITVELPDGFMKLLAMTPIG-----KETFFINNDKQKMNATQFSIWFK 274
           +       KT    TV +       L            +  F   D  +M+       FK
Sbjct: 178 DSILFSHMKTKRQATVPMSKFLRGELLEYINNMNLKHNDLLFPKIDGTQMSYDTMHQNFK 237

Query: 275 AKATKAGVNKSAHG---VRKFSATISADAGATAHELMATYGWKTVDQAETY 322
                  +    HG    R   AT+    G   + L       T+   E Y
Sbjct: 238 NYFKHCNIK--MHGVNTFRNTFATMFIKNGGDIYRLKLLLNHSTIKTTERY 286


>gi|330908686|gb|EGH37200.1| phage integrase [Escherichia coli AA86]
          Length = 388

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 54/278 (19%), Positives = 97/278 (34%), Gaps = 32/278 (11%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           T+K  + EY +      L+ ++   ++     +          ++T   +++ ++S+K T
Sbjct: 91  TVKMYLDEYLEICETRKLSPSTIGGYKKCRSALASLH-ICPASELTPATLKAWIQSQKTT 149

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR--------PWTKEDMQQ 181
             +    L+ +R     AV    + INP   V   + +++           P +  ++  
Sbjct: 150 LKTIRNQLSFLRSALDEAVTDGVLQINPVSLVTASRYQSDKSEAESSYVVDPLSPAEVDA 209

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-------------NNIFSIKTQK 228
             +         L F F +++GLR S+ C      +                +      K
Sbjct: 210 LLAAAGNKQWENL-FRFAIHTGLRSSELCALRWHDIDFVGKTAHVQSASVVGVIKGTKTK 268

Query: 229 TGTIITVELPDGFMKLL----AMTPIGKETFFINNDKQKMNATQFSIWFKAKA---TKAG 281
            GT   VEL +  M  L      T +   T F +    K  A+  +I  KA      KAG
Sbjct: 269 AGTR-KVELTEEAMLALINQKPFTFMKDATVFEDPKTNKPWASADAIRKKAWVPTLRKAG 327

Query: 282 VNKS-AHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           +     +  R   AT     GA    L A  G K  + 
Sbjct: 328 IRYRNPYQTRHTFATSHISRGANLFWLAAQMGHKGPEM 365


>gi|304438134|ref|ZP_07398077.1| phage integrase family prophage lambdaba04, site-specific
           recombinase [Selenomonas sp. oral taxon 149 str.
           67H29BP]
 gi|304368907|gb|EFM22589.1| phage integrase family prophage lambdaba04, site-specific
           recombinase [Selenomonas sp. oral taxon 149 str.
           67H29BP]
          Length = 388

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 52/388 (13%), Positives = 113/388 (29%), Gaps = 69/388 (17%)

Query: 17  RHGKII-YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75
           + GK   Y F      R        +T   A+ + +   T  +        +   L+  +
Sbjct: 9   KRGKTYSYSFDISKNPRRMKEKGGFATEDDAFDAGVKAYTDWKNGNIGITSEKVKLRDYL 68

Query: 76  SEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTP---S 131
           + + ++    ++   +  +++S  +  I+   GD   +++  + + + +           
Sbjct: 69  ASWLENVVRPNVKRTTYQNYKSEINTHILPIIGDVYVQELRPRDVDAWLMQLARAGMSHG 128

Query: 132 SAIQFLTSMRVLFKWAV-RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           +  Q  T + V  ++AV   E ++ NP   +  P+     +   T    +QF +     S
Sbjct: 129 TIQQTKTVLSVALRYAVYPAELISSNPVTGIPIPRSAPRKVIERTVITPEQFAAI-PTDS 187

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ----------KTGTIITVELP 238
           +     + + ++G+R  +        +        +  Q          KT T I     
Sbjct: 188 RYYAVMKLMYHTGMRIGEVLGLTWDDVDLSTGEIHVVRQRNQHKYFETPKTETSIRSFYT 247

Query: 239 DG-FMKLLAMTPIG----------------------------------------KETFFI 257
           D   M  L                                              +    I
Sbjct: 248 DPNLMAFLQALKREQAKNEMRRGEAYQLVYEDVQNGGALVMLPKKIHAPHNYVHRSLICI 307

Query: 258 NNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVD 317
             D                     +  ++H  R   AT   +AGA   ++ A  G     
Sbjct: 308 KPDGTIYTHEAVKNAVSR------LGLNSHSFRHTHATRLIEAGAKPVDVAARLGHADAT 361

Query: 318 QAE-TYTKGADRIRLGIKNSRRISSVVD 344
             +  Y    + +R   + +R    +VD
Sbjct: 362 ITQNLYAHDTEEMRK--ETARIFGGLVD 387


>gi|291485679|dbj|BAI86754.1| hypothetical protein BSNT_04757 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 348

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 46/296 (15%), Positives = 101/296 (34%), Gaps = 49/296 (16%)

Query: 86  SLAVNSRISFESYF----DQIIRKSGDFDY-RKITTKHIRSGVESRKHTPS--------- 131
            L   + I ++       + + +K  D +Y   +T +H+R+ +   ++            
Sbjct: 40  GLRERTIIDYKKIVRYFTEWLTQKYEDMEYVNDVTIEHLRAYIHYLRYERRRYEGHTNID 99

Query: 132 -----------SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM- 179
                      +    + ++   F +   + ++  NP   ++  K+  +    +T E++ 
Sbjct: 100 ATKQPVGLSETTVNIAIRTLTAYFNYLYAEGFIDPNPVERLKLIKQDVDMTNNFTNEEVA 159

Query: 180 ---QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIIT 234
              +Q +     G +  +    LL SGLR  +     V  +        +   +T     
Sbjct: 160 RILEQPEQRDFVGFRDYVGISLLLDSGLRIGELVGLTVDEIDFSAPQIVLGGGRTKGRYF 219

Query: 235 --VELPDGFMKLLA------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---N 283
             V +     KLL              + F+++   ++    F+   K  A +AG+    
Sbjct: 220 RIVPISTYCAKLLKQLIEENRAHFDTNSVFVSSLGDQLTTNHFNKRLKFYAERAGIKTKK 279

Query: 284 KSAHGVRKFSA-TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338
            +AH  R   A  +  D     + +    GWK +     Y       +L  ++ RR
Sbjct: 280 VTAHVYRHTWAKIMIVDKKIDIYTVQKMGGWKDIRTLRRYV------QLSTEDLRR 329


>gi|227494283|ref|ZP_03924599.1| possible site specific recombinase [Actinomyces coleocanis DSM
           15436]
 gi|226832017|gb|EEH64400.1| possible site specific recombinase [Actinomyces coleocanis DSM
           15436]
          Length = 286

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 42/268 (15%), Positives = 84/268 (31%), Gaps = 14/268 (5%)

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVES 125
           PT     + E++ +     L+ N+  +    F Q  R  ++G  +    T     +  E 
Sbjct: 18  PTVWVAPVDEWQSALKAAQLSPNTIKTRVDRFRQFARWYEAGPAECTTKTLMEYSAAHEW 77

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
              T  S    L S    F+W     Y  I+    + + K  +   RP     ++     
Sbjct: 78  SCETRRSVHATLQS---FFRWFHGAGYADIDISAGLPKVKPSSPKPRPAPDSAVRS--GL 132

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTG-TIITVELPDGFM 242
            + G++         Y GLR  +  +   + +  +I   S++    G     V LP+   
Sbjct: 133 ENGGNREYFILSLAAYVGLRREEIVKVHSKDIIEDILGYSLRVHGKGNKERIVPLPELLA 192

Query: 243 K-LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAG 301
           + ++A            N    M+A         +     +  + H +R    T++ +  
Sbjct: 193 RQVIAECARNAGYLLPGNIDGHMSARYAGK-LATRCLPGDI--TLHMLRHRFGTVAYNRS 249

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRI 329
                +    G         Y    +  
Sbjct: 250 KDIAAVQDILGHTNPATTRRYIAVENSR 277


>gi|194434223|ref|ZP_03066490.1| prophage integrase [Shigella dysenteriae 1012]
 gi|260856163|ref|YP_003230054.1| putative integrase [Escherichia coli O26:H11 str. 11368]
 gi|300935118|ref|ZP_07150148.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 21-1]
 gi|194417552|gb|EDX33654.1| prophage integrase [Shigella dysenteriae 1012]
 gi|257754812|dbj|BAI26314.1| putative integrase [Escherichia coli O26:H11 str. 11368]
 gi|300459613|gb|EFK23106.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 21-1]
 gi|332096258|gb|EGJ01261.1| prophage CP4-57 integrase [Shigella dysenteriae 155-74]
          Length = 413

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 52/333 (15%), Positives = 112/333 (33%), Gaps = 33/333 (9%)

Query: 24  YFRKGHGRRIRLPYPHESTFI--------PAYMSALTGSTPKREYINSPRKKPT-----T 70
           Y+R    +RI L +                 Y + ++  T  +++    R+        T
Sbjct: 47  YYRPSDKKRILLSFGSLEDVSLADARKRRSEYRTLISAGTDPQDHERQKRETEARRQGNT 106

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHT 129
            + + + + +     +LA N+        D  +    G+     +T +     +   K  
Sbjct: 107 FENVAAAWYQVKISQNLAPNTIKDIWRSLDKYVFPFIGNTPIDTLTARRFVEVLTPIKER 166

Query: 130 PS--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVER-----PKRKTEGIRPWTKEDMQQF 182
            +  +  + L  +  +  +A     +  NP ++V +      K+    IRP    ++ Q 
Sbjct: 167 GNLETLKRVLQRVNEVMDYAANSGLIDANPAMNVRKAFPSPVKKHMPTIRPEQLPELMQA 226

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIITVELP 238
            S  +   Q RL  E+ L +  R +++       +  +           K      + L 
Sbjct: 227 LSVSATERQTRLLIEWQLLTVTRPAEASSTRWDEINLDAKQWTIPAGRMKMRRDHVIPLS 286

Query: 239 DGFMKLLAMTPI---GKETFF--INNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFS 293
              M +L         +   F  + + +Q MN+   +   +     AGV  S HG+R   
Sbjct: 287 GQAMAVLEAMKPISHHRNYVFPSLKDPQQPMNSQTANAALRRMGF-AGVLVS-HGLRAIF 344

Query: 294 ATISADAGATAHELMATYGWKTVDQAET-YTKG 325
           +T + + G     + A       ++    Y + 
Sbjct: 345 STAANEEGFEPDVIEAALAHVDTNEVRRAYNRS 377


>gi|218532541|ref|YP_002423357.1| tyrosine recombinase XerC [Methylobacterium chloromethanicum CM4]
 gi|218524844|gb|ACK85429.1| tyrosine recombinase XerC [Methylobacterium chloromethanicum CM4]
          Length = 365

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 42/280 (15%), Positives = 83/280 (29%), Gaps = 31/280 (11%)

Query: 82  AHWGSLAVNSRISFESYFDQIIRK----------SGDFDYRKITTKHIRSGVESRKHTPS 131
           A    +A N+  ++E    Q +            +G    +    +   +   +      
Sbjct: 35  ARERRMAANTVEAYERDLRQFLIHRAARSGTPTIAGLIALKPRDLRAFMAARRAEGIGGR 94

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           S ++ L  +R   ++  R+ + ++    +V  PK +    RP          +  +    
Sbjct: 95  SLMRMLAGLRSFARFLEREGHGSVAALGAVRSPKVERRLPRPLPISAALAMTAPETRPDD 154

Query: 192 PRLA---------FEFLLYSGLRCSDSCRAG-VQHLQNNIFSIK-TQKTGTIITVELPDG 240
            R              L  SGLR S++            I  ++ T K G +  V +   
Sbjct: 155 DRAPWVLARDAAVIALLYGSGLRISEALGLTARDAPMPGIDEVRVTGKGGKVRAVPVLPA 214

Query: 241 FMKLLAMTPIGKET-------FFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRK 291
             + +A                F+      ++         A     G+    + H +R 
Sbjct: 215 VAEAVAAYLSLCPHPLDPEGPLFVGVKGGPLSPRVVQYAVSALRGALGLPESATPHALRH 274

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
             AT           +    G  ++   + YTK  D  RL
Sbjct: 275 SFATHLLARRGELRAIQELLGHASLSTTQIYTK-VDAARL 313


>gi|187929820|ref|YP_001900307.1| integrase family protein [Ralstonia pickettii 12J]
 gi|187726710|gb|ACD27875.1| integrase family protein [Ralstonia pickettii 12J]
          Length = 415

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 54/317 (17%), Positives = 113/317 (35%), Gaps = 35/317 (11%)

Query: 45  PAYMSALTGSTPKREYIN---SPRKKPTTLK---WLISEYRKSAHWGSLAVNS-----RI 93
             Y + +   T   E+     + RK   +L+    L   +  S  W    + +     R 
Sbjct: 74  AEYRAMVEQGTDPAEHRRQDKAERKAKESLQEDEGLFKAF--SLKWIDERLATKTEGYRS 131

Query: 94  SFESYFDQII-RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEY 152
             +S  ++ +    G      +   H+   +E+R+ TP++A      ++ ++ +A+++  
Sbjct: 132 QIKSRLERFVWPVIGRKALEDVKPSHLLEIIEARRATPNTAEGVRVIIQQIYNYAIQKLL 191

Query: 153 VAINPCLSVERPKR--KTEGIRPWTKEDMQQF-KSFWSEGSQPR--LAFEFLLYSGLRCS 207
           V  NP + +       K E  R  ++ ++  F ++   +G+ P    A   L+YS  R S
Sbjct: 192 VESNPAVPLRGVITVPKAEHHRHLSESELGAFWRALGRQGAHPATTAAARLLVYSMCRKS 251

Query: 208 DSCRAGVQHLQNNIFSI----KTQKTGTIITVELPD---GFMKLLAMTPIGKETFFINND 260
           +  RA       +        +  K+     V L       ++++            +  
Sbjct: 252 EVLRAKWAEFDLDKAQWDIPAERMKSRRPHRVYLSRQAIELLEIMRAISGDGVYVLPSVK 311

Query: 261 --KQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD 317
                +     +  FK      GV + S HG R  +AT+  + G +   +          
Sbjct: 312 IASVPLAEATLNHLFKR--LDFGVPEFSPHGTRGTAATLLREHGFSRDVVELLLAHTERS 369

Query: 318 -QAETYTK---GADRIR 330
             A +Y      A+R +
Sbjct: 370 QTAASYHHHELEAERRK 386


>gi|331694988|ref|YP_004331227.1| integrase family protein [Pseudonocardia dioxanivorans CB1190]
 gi|326949677|gb|AEA23374.1| integrase family protein [Pseudonocardia dioxanivorans CB1190]
          Length = 446

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 68/219 (31%), Gaps = 29/219 (13%)

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
           P +       +      AVR   +  NP      P+ +      W+ +++++F       
Sbjct: 186 PKTVRNVHVMLHGALADAVRWNLLQRNPATDARPPRVRRRSHAIWSTDELRRFVEHARSD 245

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT----------------GTII 233
               L    +  +GLR S+        L      + + +T                 +  
Sbjct: 246 HHAALWL-LVCTTGLRRSELAGLRRADLDLANGRLTSGETRVVVGGQATDSDGKSDDSRR 304

Query: 234 TVELPDGFMKLLAMTPIG-----------KETFFINNDKQKMNATQFSIWFKAKATKAGV 282
           T+ L    +  L    +             +  F + D + ++    + WF   + +AG+
Sbjct: 305 TLALDPVTVDALREFLVRWDELKQEFGHNGQHLFCHPDGRPIHPDTITEWFARLSWEAGL 364

Query: 283 -NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
                H VR   AT +  AG     +    G  +V   +
Sbjct: 365 PPIRLHDVRHSYATAALRAGVPVKVVSERLGHSSVSFTQ 403


>gi|319937111|ref|ZP_08011518.1| hypothetical protein HMPREF9488_02353 [Coprobacillus sp. 29_1]
 gi|319807477|gb|EFW04070.1| hypothetical protein HMPREF9488_02353 [Coprobacillus sp. 29_1]
          Length = 355

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 51/295 (17%), Positives = 100/295 (33%), Gaps = 39/295 (13%)

Query: 90  NSRISFESYFDQIIRKSGDFDYRKITTKHIRSG----VESRKHTPSSAIQFLTSMRVLFK 145
            +  + E+ +  I R  G  +   I    IR      +    ++ S     +  ++ +F 
Sbjct: 21  ATVETIENRYVVISRYFGKSNISNINKIAIRKYQNYLLNECNYSVSHVNNLIGVLKQIFN 80

Query: 146 WAVRQEYVAINPCLSV----ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201
           +A+   Y+  N   SV    +R K   E    W  E   +F  + +  +  ++ F  L +
Sbjct: 81  FALENGYIKTNTIASVSMINKRVKIPKEK-VIWNLEQFLKFNEYIN-NTTDKVIFNMLFF 138

Query: 202 SGLRCSDSCRAGVQHLQ--NNIFSI-----KTQKTGTIITVE----------LPDGFMKL 244
            G+R  +        +        I     + +  G +IT            +     +L
Sbjct: 139 LGIRKGELLSLRWNEVSFAQKNIKIISTANREKGKGQVITPPKTVHSNRIVVMDKFLCEL 198

Query: 245 LAMTPIGKETF--------FINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSAT 295
           +    IG+           F+    + M+ T      K    K  + + + HG R   AT
Sbjct: 199 IEEYYIGQRKIYGKDIKQKFVIGGDKMMSFTSLQRLLKKYLAKTQLPEITLHGFRHSHAT 258

Query: 296 ISADAGATAHELMATYGWKTVDQA-ETY--TKGADRIRLGIKNSRRISSVVDSDD 347
           + AD       +    G + ++   +TY  T    + +L  +  R + S   S  
Sbjct: 259 MLADFSTDIKAISERLGHENIEITLKTYIHTNSKAQFKLTKEIERNVQSHNKSKF 313


>gi|317501029|ref|ZP_07959237.1| hypothetical protein HMPREF1026_01180 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|316897607|gb|EFV19670.1| hypothetical protein HMPREF1026_01180 [Lachnospiraceae bacterium
           8_1_57FAA]
          Length = 410

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 48/396 (12%), Positives = 102/396 (25%), Gaps = 75/396 (18%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP--------- 64
            + R+ K   Y R       R            Y + L       + IN           
Sbjct: 9   NKGRNLKTGEYQRPDGRYEYRYKDEITRKRNSVYAADLASLREMEKKINKDMDDLLITDA 68

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGV 123
             K  T+  L   Y  +    ++   ++ ++   +D +I    G+       T H+R+  
Sbjct: 69  SVKKLTINTLFERYMAT---KNIKERTKKNYIRMWDYRIRNILGNIRVVDFKTSHVRTFF 125

Query: 124 ESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLS-VERPKRKTEGIRPWTKEDM 179
            +        S+       +   F+ AV    +  NP    +       +     T E  
Sbjct: 126 SALSDEGLAHSTIKGLYGLLNPSFELAVEDGIIRKNPVTGTLGDYGAPAKEKEALTLEQQ 185

Query: 180 QQFKSFWSEGS--QPRLAF-EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ--------- 227
           ++   F  + +  +P L   + +  + LR S++       +      I            
Sbjct: 186 EKLLKFVEQSNVYKPHLPMVQVMFGACLRVSETIGLTWSDVDMKNREIHVGGQLVYYEGD 245

Query: 228 ----------KTGTII-TVELPD----------------GFMKLLAMTPIGKETFFINND 260
                     KT   I  + +                  G    + +        F    
Sbjct: 246 EGYCFHDSETKTDAGIRDIPMTQMVYDAFRKQRELNLMLGLQSNVEIGGRSGF-IFNTKH 304

Query: 261 KQKMNATQFSIWFK-----------------AKATKAGVNKSAHGVRKFSATISADAGAT 303
            + +     + + K                  +  +     S+H +R    T   +    
Sbjct: 305 GRPIMPAGVNSFLKNIVNAYNKKESKLAEEEKREPELMPPISSHTLRHTGCTRLGENNVN 364

Query: 304 AHELMATYGWKTVDQAE-TYTKGADRIRLGIKNSRR 338
              +    G          Y   A++  +  + S+ 
Sbjct: 365 PKVMQYVMGHSDAQITMNVYNHIAEKSHVENEMSKM 400


>gi|291516021|emb|CBK65231.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
          Length = 308

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/269 (14%), Positives = 91/269 (33%), Gaps = 23/269 (8%)

Query: 89  VNSRISFESYFDQIIRKSGDFDYRKITTK---HIRSGVESRKHTPSSAIQFLTSMRVLFK 145
            N R+++      +    G     + T +   H    + +R    +S +  + S+R ++ 
Sbjct: 39  ANYRMAYRMLVRYV--GGGKLPPEQFTAEWLEHYERWLLARGLGTNSVVFHMRSLRAVYN 96

Query: 146 WAVRQEY---VAINPCLSVERPKRKTEGIRPWTKEDMQQ-----FKSFWSEGSQPRLAFE 197
            AV Q        NP       K+     R   +E +++       +   + +  R  F 
Sbjct: 97  RAVEQGLFPAAGSNPFRR-RLIKQVATRKRALPRETLRRIGGADLSALHPKYALARDLFM 155

Query: 198 FLLYS-GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFF 256
           F  Y+ G+   D        +++ + + + +KTG  +++ +     K++           
Sbjct: 156 FSFYTRGMSFVDMIYLRKSDVRDGVLTYRRKKTGQTLSLRVEAPLQKIIDRYDSDSPYVL 215

Query: 257 I------NNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELM 308
                  +    +    + + + +      G+    + +  R   AT++ D G     + 
Sbjct: 216 PVLTADDSYRAYRQQQRELNKFIRKIGELLGISEPLTFYVARHSWATLARDCGTPLTVIS 275

Query: 309 ATYGWKTVDQAETYTKGADRIRLGIKNSR 337
           A  G  +      Y    DR  +   N +
Sbjct: 276 AGMGHTSERTTRVYLAQLDRSVIDKANRK 304


>gi|289665799|ref|ZP_06487380.1| site-specific recombinase, phage integrase family protein
           [Xanthomonas campestris pv. vasculorum NCPPB702]
          Length = 402

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 48/325 (14%), Positives = 109/325 (33%), Gaps = 28/325 (8%)

Query: 49  SALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSG 107
           +A      ++    +  K   T      ++ +      +A ++R    S +++ +  K G
Sbjct: 77  AAGKSPAKEKARDKARVKDAETFGAWAEKWLRGYQ---MAESTRDMRRSVYERELKAKFG 133

Query: 108 DFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165
           +    +IT + +R+  ++   +  P++A+     +  +++WA+ +     NP   V    
Sbjct: 134 NHKLAEITHEDLRALTDAIVERGAPATAVHTREIVLQVYRWAIERGQKVENPADLVRPTT 193

Query: 166 RKT--EGIRPWTKEDMQQFKSFWS-EGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQNN 220
                   R  T +++     +    G+ P  R A + LL + +R S+   A    +   
Sbjct: 194 IAKFEPRDRALTPDEIGLMYQYMERIGTTPSIRAAAKLLLLTMVRKSELTNATWSEINFT 253

Query: 221 IFSIK----TQKTGTIITVELPDGFMKLLAMTPI---GKETFFINNDKQ--KMNATQFSI 271
                      K      V L    + +         G E    +       M++   + 
Sbjct: 254 EALWTIPKERMKRRNSHLVFLSKQALDIFIALKTFAGGSEYVLPSRYDSDLPMSSATLNQ 313

Query: 272 WFK---AKATKAGV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
                   A K G+       H +R+ ++T+  +AG     +      +       Y K 
Sbjct: 314 VLTLTYRLAQKEGLSLGKFGPHDLRRTASTLLHEAGYNTDWIEKCLAHEQKGVRAVYNKA 373

Query: 326 --ADRIRLGIKNSRRISSVVDSDDP 348
              D+ R  +++   +        P
Sbjct: 374 EYRDQRRAMLQDWADMIDEWTIRKP 398


>gi|116511381|ref|YP_808597.1| integrase [Lactococcus lactis subsp. cremoris SK11]
 gi|116107035|gb|ABJ72175.1| Integrase [Lactococcus lactis subsp. cremoris SK11]
          Length = 374

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 52/277 (18%), Positives = 102/277 (36%), Gaps = 37/277 (13%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLF 144
             LA ++ +S        I+K G  +   I  K ++  + S K++ ++       +  +F
Sbjct: 80  AELAESTYLSETYGLKDFIKKFGQREIISIEPKEMQEYLFSNKYSNTTRHTIALRIGHIF 139

Query: 145 KWAVRQEYVAINPCLSVERPKRKT--EGIRPW-----TKEDMQQFKSFWSEGSQPRLAF- 196
           ++A    +   N    +  PK+K   E +  W     T ++M++F   W   +  +  F 
Sbjct: 140 QYAYSMGFTHENIMNRIILPKQKKSAESLAKWKEKFFTMDEMRKFLKSWRSHAVEKDDFK 199

Query: 197 -----EFLLYSGLRCSDSCRAGVQHLQN--NIFSIK-----------TQKTGTII-TVEL 237
                EFL  +GLR  ++      H+     +  I+             K    +  V L
Sbjct: 200 RADFVEFLFLTGLRIGEASGLQWSHVDILKRVIYIQFSWNCNLKKLGPTKNPQSVRYVTL 259

Query: 238 PDGFMKLL---AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK------SAHG 288
            D  +++L        G +  F+ ++  ++     + + K +  +A +        SAH 
Sbjct: 260 NDRCLEILENFRKDKYGSKFVFVKSNGVQIRNADINTYLKIEGARANLFGKNYKQFSAHM 319

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
           +R    T+ A  GA    +M   G          YT 
Sbjct: 320 LRHSHITMLAFLGAPQKAVMERVGHMDARITNGVYTH 356


>gi|303236457|ref|ZP_07323044.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
 gi|302483308|gb|EFL46316.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
          Length = 431

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 49/317 (15%), Positives = 104/317 (32%), Gaps = 29/317 (9%)

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK 113
           +T     +   + +  ++K  + + R    + +L  + R   E   ++ ++        +
Sbjct: 98  ATNPTTLLAMSKAELQSVKESVGKSRAEGTYLNLFYSDRNLREFVENKGVQDISIGTITE 157

Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
                 R  ++ R    S+    L  +  L   AV +  +  NP  + +  K + + IR 
Sbjct: 158 DLFDEYRFFLKKRGLKASTVNSNLCWLSRLMFRAVSKRIIRCNPFENAKYEKEEKK-IRF 216

Query: 174 WTKEDMQQF---KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---NNIFSIK-- 225
             K D+ +    +    E    RL F F  ++GL  SD      +H+Q   +    I+  
Sbjct: 217 LQKSDVMKLMSMRMNDREAELARLMFVFSCFTGLAISDMENLEYKHIQTTADGQMYIRKE 276

Query: 226 TQKTGTIITVELPDGFMKLL-------------AMTPIGKETFFINNDKQKMNATQFSIW 272
            QKT     V L      ++                    +    + +  +         
Sbjct: 277 RQKTKVEFIVPLHPIAEAIISHCQKEQERSEEQQTVKEKDDHLVFHRNCSRSVMDTKLSI 336

Query: 273 FKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
                   G+    S H  R    T+S  AG     +    G  ++   + Y +  D+  
Sbjct: 337 VGKAC---GIRQRLSFHMARHTFGTMSLSAGIPIESIAKMMGHASISSTQVYAQVTDKK- 392

Query: 331 LGIKNSRRISSVVDSDD 347
              ++  R+ +   + +
Sbjct: 393 -ISEDMDRLIAKQSAKE 408


>gi|297570372|ref|YP_003691716.1| integron integrase [Desulfurivibrio alkaliphilus AHT2]
 gi|296926287|gb|ADH87097.1| integron integrase [Desulfurivibrio alkaliphilus AHT2]
          Length = 465

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 42/292 (14%), Positives = 80/292 (27%), Gaps = 57/292 (19%)

Query: 91  SRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA----IQFLTSMRVLFKW 146
           +  ++  +  + +R  G+ +        I   ++        A     Q L ++   ++ 
Sbjct: 165 TEQAYLGWACRYLRFLGEREPAVAGEADIALFLQKLAVEGRVAASTQNQALNALVFFYRE 224

Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKED-MQQFKSFWSEGSQPRLAFEFLLYSGLR 205
           AV +E   +       R K+        ++ + ++  ++     +   L    L  +GLR
Sbjct: 225 AVGREVGEL---GDFVRAKQPRRLPVVLSRSETVRLLEALREISALHHLMASLLYGTGLR 281

Query: 206 CSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELP----DGFMKLLA---------MTPI 250
             +  R  VQ +        ++  K      V LP    +     LA         +   
Sbjct: 282 LMECVRLRVQDVDFDLGQIMVRDGKGQKDRVVPLPQGVQEPLRDHLAEVRRLHEEDLAQG 341

Query: 251 GKETFFINNDKQKMN--------------------------------ATQFSIWFKAKAT 278
             E +      +K                                          K    
Sbjct: 342 LGEVYLPEALGRKYPNAAREWGWQFVFPSGRLSTDPRSGVVRRHHIHENGLQKSIKKATL 401

Query: 279 KAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
            AG+ K    H +R   AT    AG     +    G   V     YT   +R
Sbjct: 402 AAGLTKRVNCHALRHSFATHLLAAGYDIRTVQELLGHADVSTTMIYTHVLNR 453


>gi|218891103|ref|YP_002439969.1| phage integrase, putative [Pseudomonas aeruginosa LESB58]
 gi|218771328|emb|CAW27093.1| phage integrase, putative [Pseudomonas aeruginosa LESB58]
          Length = 370

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 55/353 (15%), Positives = 103/353 (29%), Gaps = 49/353 (13%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
           LP  +  +  R      Y R   G+     +P       A  +A   +       +   K
Sbjct: 13  LPQNLYLDARR--GTYRYKRPTDGKW----FPFGPDRAKAIDAAKQLNLEFMRGADLVNK 66

Query: 67  KPTTLKWLISEYRKSAHW-----GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121
                  L   +             LA  +   +   F Q           +IT + +  
Sbjct: 67  VQGAGSDLFVAFLDKYEREILPPRELAKGTLDLYAVRFRQFRAAWPTQAVDEITIRMVAE 126

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS-VERPKRKTEGIRPWTKEDMQ 180
            ++S   TP +A Q    +  +F  A  +     NP  S + R ++K       T E ++
Sbjct: 127 LLDSL--TPRAANQARALLVDIFNHAAAKGLCPDNPAASTIARIEKKQRKRH--TVEGLR 182

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-----ITV 235
             +       Q   A +  L +  R +D        +++    +  QKT        I  
Sbjct: 183 AIREQAPAWLQN--AIDLALITAQRRTDILAMRFDDVRDGFLYVVQQKTAKASDAAWIRF 240

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ---------------FSIWFKAKATKA 280
            +      +LA       + F+ + + +    +                +  FK     A
Sbjct: 241 RVTAELQAVLARCRDNVPSPFLIHRRPERKRQKQAEQKEHWTKVEERYLTRAFKDARDAA 300

Query: 281 GV--NKS------AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           G     S       H +R  S  +   AG    ++    G  + +    Y + 
Sbjct: 301 GCYSGWSEEEMPGFHEIRALSLHLYKKAGKDGQKIA---GHASEEMTRNYQRD 350


>gi|189463338|ref|ZP_03012123.1| hypothetical protein BACCOP_04055 [Bacteroides coprocola DSM 17136]
 gi|189429957|gb|EDU98941.1| hypothetical protein BACCOP_04055 [Bacteroides coprocola DSM 17136]
          Length = 285

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 43/283 (15%), Positives = 94/283 (33%), Gaps = 27/283 (9%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132
            ++++++      +LA N+  S+       +   G+ + + +       G       P +
Sbjct: 18  NMVTKFKNYLAKTNLAKNTVTSYVWTVQYFLNHYGEVNKKNLLA---YKGYLVENFKPQT 74

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI--RPWTKEDMQQFKSFWSEGS 190
               L  +    ++  +++         V+  K + +       +  D +  K+      
Sbjct: 75  VNLRLQGINKFLEFTKQEKL-------KVKFVKVQQKNFLENVISDADYKFLKARLKADG 127

Query: 191 QPRLAFE--FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM----KL 244
                F   F+  +G R S+      +H++     +   K G I  + +P        K 
Sbjct: 128 YEEWYFIVWFMAATGARVSELLHIKAEHIKVGYLDL-YSKGGKIRRLYIPKNLRTEAEKW 186

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAG 301
           L    +     F+N   Q++     +   K  A K G+NK     H  R   A    D  
Sbjct: 187 LKSQGLTSGYIFLNRFGQRITTRGIASQLKHFAEKYGMNKEVVYPHSFRHRFAKNFLDRF 246

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
                L    G ++++    Y +     R   +  + +  VV+
Sbjct: 247 NDLALLADLMGHESIETTRIYLR-----RTASEQQKIVDKVVN 284


>gi|16263337|ref|NP_436130.1| integrase/recombinase [Sinorhizobium meliloti 1021]
 gi|16263633|ref|NP_436426.1| Integrase/recombinase [Sinorhizobium meliloti 1021]
 gi|14524018|gb|AAK65542.1| integrase/recombinase [Sinorhizobium meliloti 1021]
 gi|14524343|gb|AAK65838.1| Integrase/recombinase [Sinorhizobium meliloti 1021]
          Length = 329

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 44/284 (15%), Positives = 84/284 (29%), Gaps = 28/284 (9%)

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
           PR++  ++      Y  S          R+S      QI     D        +HI    
Sbjct: 17  PRERRASVHT-CDAYAYSFQLLVTFAARRLSKRPCLLQIEDI--DVPMILAFLEHIE--- 70

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV---ERPKRKTEGIRPWTKEDMQ 180
           E+R +   S    L +++  F++   +    ++  L V      K     +   ++ ++Q
Sbjct: 71  ETRGNKARSRNARLAAVKSFFRYLEHRVPAVLDQALRVHAMPMKKIDEALVASLSRTEVQ 130

Query: 181 QFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI---FSIKTQKTGTII 233
              +        G + R         GLR S+     +            I  +     +
Sbjct: 131 ALLNAPDRRSLSGIRDRAMLHLAFAGGLRVSELVGLTLDQFDGRSPASIHIIGKGRRERV 190

Query: 234 TVELPDGFMKLLA----MTPIGKETFFINNDKQKMNATQFSIWFKAKATKA--------G 281
                +    + A        G    F+NN  + M  + F    +  A  A         
Sbjct: 191 LPLWQETAAAIRAWIAVRPKNGDTALFLNNAGRMMTRSGFEYILEKHAAAAVSVAPTLAT 250

Query: 282 VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
            + S H +R   A     A     ++    G  ++   E Y + 
Sbjct: 251 KSISPHVLRHSCAMHMLQATRDIRKVALWLGHASLQSTEIYLRA 294


>gi|312977849|ref|ZP_07789595.1| phage integrase [Lactobacillus crispatus CTV-05]
 gi|310895156|gb|EFQ44224.1| phage integrase [Lactobacillus crispatus CTV-05]
          Length = 370

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/296 (11%), Positives = 96/296 (32%), Gaps = 36/296 (12%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKH 128
                 ++ ++         ++  ++  +  +    G     K+T    +  +    + H
Sbjct: 61  FAEYFKDWYETYKAPGTTNGTKNRYKQIYKLLTEYFGKTKLSKVTRHQYQEFMNQYGKNH 120

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV--ERPKRKTEGIRPWTKEDMQQFKSFW 186
              +  +   S+    K A+ +  +  N    +       +T  +     + +Q+ K   
Sbjct: 121 VKGTVYKTNGSINSSIKDALAEGLIRTNFAERINLTWNNERTRKVDYLNFDQVQKLKESL 180

Query: 187 SEGSQP----RLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSI---------------- 224
            +G +P    R     ++Y+G+R  +        +   ++   I                
Sbjct: 181 LDGIKPSYISRYMLLTIIYTGMRPGEIRVLTWHDINFDDHTIHISKSWDYDNNKIIDYDS 240

Query: 225 -----KTQKTGTIITVELPDGFMKLLAMTPI-GKETFFINNDKQKMNATQFSIWFKAKAT 278
                +T+   +   +++    + +L+       E  FI+ D +   ++  +   + +  
Sbjct: 241 DEINKETKNRSSTRVIKVDQNLLDILSQLKSNNHERLFIDPDGKIPTSSAVNKVLRKQLK 300

Query: 279 KAGVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADRIR 330
           K  ++K     H +R     +    G + + +    G   +   A TY    D ++
Sbjct: 301 KLNISKENFHFHSLRHTHVAMLLFKGVSLYSISKRLGHSNMSITANTYAYMLDELK 356


>gi|307546797|ref|YP_003899276.1| hypothetical protein HELO_4207 [Halomonas elongata DSM 2581]
 gi|307218821|emb|CBV44091.1| hypothetical protein HELO_4207 [Halomonas elongata DSM 2581]
          Length = 396

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 45/283 (15%), Positives = 91/283 (32%), Gaps = 35/283 (12%)

Query: 75  ISEYRKS---AHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
           +  Y +S   A   +L  ++   +    + Q+I + G     ++   H+R    +   + 
Sbjct: 83  LDHYLRSWLDAKKPTLKASTYRDYRKTIEGQLIPEFGHLLLAELKRGHVRDWAATLACSN 142

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK----RKTEGIRPWTKEDMQQFKSFW 186
                 ++ +R     A+  E +  NP       K    R+ + + P+T ++     +  
Sbjct: 143 KRIANLVSPLRAALDDAMHDELIHANPLAGWHYRKQEDPRERDELDPFTADEQAAILAAC 202

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK---------------TGT 231
            +  QP L F F  ++GLR S+        +      +K  +               T  
Sbjct: 203 PDAGQPLLQFAF--WTGLRTSELVALEWGDIDWRRKRLKVSRAITQASKGQAEGPKTTAG 260

Query: 232 IITVELPDGFMKLLAMTPIG------KETFFINNDKQKMNATQ--FSIWFKAKATKAGVN 283
             T++L    ++ L               F            Q      +     +AGV 
Sbjct: 261 ARTIDLLPRAIEALKAQKAQSYLHPSSRVFLNPRTGDPWTGDQAIRKTLWAHALKRAGVR 320

Query: 284 -KSAHGVRKFSATISADAGATAHELMATYGWKT-VDQAETYTK 324
            +  +  R   A++   AG     +    G  + V  A  Y +
Sbjct: 321 YRRPYQTRHTYASMMVSAGEPLAWVSRQMGHTSVVTTARIYAQ 363


>gi|254563619|ref|YP_003070714.1| ptyrosine recombinase xerC, integrase/recombinase Ripx
           [Methylobacterium extorquens DM4]
 gi|254270897|emb|CAX26902.1| ptyrosine recombinase xerC, integrase/recombinase Ripx (xerC)
           [Methylobacterium extorquens DM4]
          Length = 365

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 42/280 (15%), Positives = 83/280 (29%), Gaps = 31/280 (11%)

Query: 82  AHWGSLAVNSRISFESYFDQIIRK----------SGDFDYRKITTKHIRSGVESRKHTPS 131
           A    +A N+  ++E    Q +            +G    +    +   +   +      
Sbjct: 35  ARERRMAANTVEAYERDLRQFLIHRAARSGTPTIAGLIALKPRDLRAFMAARRAEGIGGR 94

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           S ++ L  +R   ++  R+ + ++    +V  PK +    RP          +  +    
Sbjct: 95  SLMRMLAGLRSFARFLEREGHGSVAALGAVRSPKVERRLPRPLPISAALAMTAPETRPDD 154

Query: 192 PRLA---------FEFLLYSGLRCSDSCRAG-VQHLQNNIFSIK-TQKTGTIITVELPDG 240
            R              L  SGLR S++            I  ++ T K G +  V +   
Sbjct: 155 DRAPWVLARDAAVIALLYGSGLRISEALGLTARDAPMPGIDEVRVTGKGGKVRAVPVLPA 214

Query: 241 FMKLLAMTPIGKET-------FFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRK 291
             + +A                F+      ++         A     G+    + H +R 
Sbjct: 215 VAEAVAAYLSLCPHPLDPEGPLFVGVKGGPLSPRVVQYAVSALRGALGLPESATPHALRH 274

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
             AT           +    G  ++   + YTK  D  RL
Sbjct: 275 SFATHLLARRGELRAIQELLGHASLSTTQIYTK-VDAARL 313


>gi|241895460|ref|ZP_04782756.1| integrase [Weissella paramesenteroides ATCC 33313]
 gi|241871434|gb|EER75185.1| integrase [Weissella paramesenteroides ATCC 33313]
          Length = 293

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/258 (13%), Positives = 89/258 (34%), Gaps = 29/258 (11%)

Query: 91  SRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAV 148
           +   ++    Q+ +   +     +  +  +  +     T    + + F   ++     A+
Sbjct: 13  TYAKYQQTHKQLRKLVPNLRLCDLNRQVYQELLNLYAETHEKQTVLDFHHQVKSGILDAL 72

Query: 149 RQEYVAINPCLSV--ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY--SGL 204
            +  + I+P   +  +    +   I+   ++++ +  +  + G +  L + FLL   +GL
Sbjct: 73  EEGLLTIDPTRKIVIKGTVTQQHKIKYLNQQELTKLLAQLTLGDELSLDYFFLLIAKTGL 132

Query: 205 RCSDSCRAGVQHLQNNIFSIKTQKT--------------------GTIITVELPDGFMKL 244
           R S++          +  ++   KT                       I  ++   F +L
Sbjct: 133 RFSEALGITPNDFDLSRLTLSVNKTWDYKSAKGQFTPTKNTASMRKVPIDWQVAMQFAQL 192

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGAT 303
           +   P  +  F      +K      +        +AG+ + S HG+R   A++   AG +
Sbjct: 193 IKDLPKNQPIFI--TPGKKFYNETANDKLARYCKRAGIPEISVHGLRHTHASLLLYAGVS 250

Query: 304 AHELMATYGWKTVDQAET 321
              +    G   ++  + 
Sbjct: 251 IGSVAQRLGHSNMNTTQR 268


>gi|289806186|ref|ZP_06536815.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 164

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 52/148 (35%), Gaps = 10/148 (6%)

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT--------VELP 238
               + R   E +  +GLR S+     ++HL  +   +     G+           V   
Sbjct: 13  PLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLDTGEVWVMGKGSKERRLPIGRNAVTWI 72

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATI 296
           + ++ L  +    +E  F++   ++++A      F     K G+N     H +R   AT 
Sbjct: 73  EHWLDLRGLFASDEEALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVHPHKLRHSFATH 132

Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324
             ++      +    G   +   + YT 
Sbjct: 133 MLESSGDLRGVQELLGHANLSTTQIYTH 160


>gi|154500819|ref|ZP_02038857.1| hypothetical protein BACCAP_04504 [Bacteroides capillosus ATCC
           29799]
 gi|150270319|gb|EDM97645.1| hypothetical protein BACCAP_04504 [Bacteroides capillosus ATCC
           29799]
          Length = 322

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 46/284 (16%), Positives = 85/284 (29%), Gaps = 33/284 (11%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRK- 127
           TLK  I  +++          +  +    F + I+   G+    ++T + +   +E RK 
Sbjct: 2   TLKDYILRWQEVYDKNQSRPTTYAAHGYLFKNHILPGLGEIQLSELTVEQVGDFLEERKR 61

Query: 128 ---HTPSSA----------IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
              H P S                 ++     A+R   +A NP  +   PK K       
Sbjct: 62  FGGHRPESPEYPGLGEHTMRHIHRLLQQCLDQAIRDGLIADNPARAFHHPKPKKVSANVL 121

Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTI- 232
           T  +++ +             F   L  GLR  +        L     ++  T+K     
Sbjct: 122 TPAEVEDYLDAAERLGH-LPMFLLALTVGLRQGELIALKWSDLDVKARTLTITEKRSVER 180

Query: 233 ----------ITVELPDGFMKLLAMTPIGKE----TFFINNDKQKMNATQFSIWFKAKAT 278
                      TV L +  +KLL +           F     ++  +             
Sbjct: 181 RELVEYGNDTRTVSLTEEVVKLLRLEHAKHSRSPLMFMHPATQKPYSPQMVRRLHNEIIQ 240

Query: 279 KAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
           +AG++      +R   A +S   G    E+    G   +     
Sbjct: 241 EAGLDHIRFADLRHTCAVLSLKNGMDTKEVSQMLGHFRIAMTRQ 284


>gi|255655014|ref|ZP_05400423.1| integrase [Clostridium difficile QCD-23m63]
          Length = 397

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/285 (13%), Positives = 80/285 (28%), Gaps = 48/285 (16%)

Query: 85  GSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRSGVESRKHT---PSSAIQFLTSM 140
            ++   ++   +     +   K G      +     +      K       +      S+
Sbjct: 96  ANVRHGTKQGRKQLMRILQEDKLGACRIENVKLSDAKEWALRMKEKGYGFKTINNHKRSL 155

Query: 141 RVLFKWAVRQEYVAINPC--LSVERPKRKTEGIRPWTKEDMQQFKS---FWSEGSQPRLA 195
           +  F  A++ + +  NP         +  TE   P +      F S         +    
Sbjct: 156 KAAFYTAIQDDCIRKNPFDFQLNTVLEDDTEPKEPLSPTQEAAFLSFVQHDKVYQKYYDE 215

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT------------------QKTGTIITVEL 237
              LL +GLR S+ C      +  +   I                     K+G  + + +
Sbjct: 216 IIILLGTGLRISELCGLTEADIDLDKQLINVDHQLLKIADVGYYVETPKTKSGNRV-IPM 274

Query: 238 PDGFMKLLAMTPIGKET------------FFINNDKQKMNATQFSIWFK------AKATK 279
            +  ++        ++              F+N +     A  +   F+       K  K
Sbjct: 275 SEKVLEAFQRVLNKRKYAQTVILEGYTKFLFLNRNGLPKVAVNYESMFRGLVRKYNKTQK 334

Query: 280 AGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
             + K  + H +R    T  A+AG     L    G   ++    Y
Sbjct: 335 VALPKVMTPHTLRHTFCTTLANAGMNPKALQYIMGHSNINMTLNY 379


>gi|189440818|ref|YP_001955899.1| Integrase [Bifidobacterium longum DJO10A]
 gi|189429253|gb|ACD99401.1| Integrase [Bifidobacterium longum DJO10A]
          Length = 312

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/285 (13%), Positives = 91/285 (31%), Gaps = 31/285 (10%)

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
           +  +     S++      G++   +   ++     + +   D    +      +  +   
Sbjct: 8   EEMSFCDYYSQWVDVYKEGAIREVTMKKYKLTQAWLRKLIPDLKLSEFDRVSYQKLINGY 67

Query: 127 KHTPS--SAIQFLTSMRVLFKWAVRQEYVAINPCLS--VERPKRKTEGIRPWTKEDMQQF 182
                  + + F   ++     AV +  +  +P     ++  + + +  +   + ++   
Sbjct: 68  AEHHEHQTTMDFHHQLKGAILDAVDEGLIQRDPTRKAIIKGKQPRQKKTKYLNQFELHAV 127

Query: 183 KSFWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSIKTQKT----------- 229
            +       P   +  LL   +GLR S++             ++   KT           
Sbjct: 128 LADLKLDPIPNWDWLILLVAKTGLRFSEALGLTPDDFDFVHQTLSVNKTWNYKNGGGFVP 187

Query: 230 --------GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281
                      +  +L      LL   P  K  F    + +  N+T   I  +    +AG
Sbjct: 188 TKNASSVRKVQLDWQLIMQLSVLLKNLPDDKPIFV---NGKVYNSTANGILARH-CKQAG 243

Query: 282 VNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
           V   S HG+R   A++   AG +   +    G  +++   ETY  
Sbjct: 244 VPVISIHGLRHTHASLLLFAGVSIASVSKRLGHASMNTTQETYLH 288


>gi|23466323|ref|NP_696926.1| phage family integrase [Bifidobacterium longum NCC2705]
 gi|317481754|ref|ZP_07940784.1| phage integrase [Bifidobacterium sp. 12_1_47BFAA]
 gi|322689710|ref|YP_004209444.1| phage integrase [Bifidobacterium longum subsp. infantis 157F]
 gi|23327078|gb|AAN25562.1| phage family integrase [Bifidobacterium longum NCC2705]
 gi|316916802|gb|EFV38194.1| phage integrase [Bifidobacterium sp. 12_1_47BFAA]
 gi|320461046|dbj|BAJ71666.1| phage integrase [Bifidobacterium longum subsp. infantis 157F]
          Length = 309

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/285 (13%), Positives = 91/285 (31%), Gaps = 31/285 (10%)

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
           +  +     S++      G++   +   ++     + +   D    +      +  +   
Sbjct: 8   EEMSFCDYYSQWVDVYKEGAIREVTMKKYKLTQAWLRKLIPDLKLSEFDRVSYQKLINGY 67

Query: 127 KHTPS--SAIQFLTSMRVLFKWAVRQEYVAINPCLS--VERPKRKTEGIRPWTKEDMQQF 182
                  + + F   ++     AV +  +  +P     ++  + + +  +   + ++   
Sbjct: 68  AEHHEHQTTMDFHHQLKGAILDAVDEGLIQRDPTRKAIIKGKQPRQKKTKYLNQFELHAV 127

Query: 183 KSFWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSIKTQKT----------- 229
            +       P   +  LL   +GLR S++             ++   KT           
Sbjct: 128 LADLKLDPIPNWDWLILLVAKTGLRFSEALGLTPDDFDFVHQTLSVNKTWNYKNGGGFVP 187

Query: 230 --------GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281
                      +  +L      LL   P  K  F    + +  N+T   I  +    +AG
Sbjct: 188 TKNASSVRKVQLDWQLIMQLSVLLKNLPDDKPIFV---NGKVYNSTANGILARH-CKQAG 243

Query: 282 VNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
           V   S HG+R   A++   AG +   +    G  +++   ETY  
Sbjct: 244 VPVISIHGLRHTHASLLLFAGVSIASVSKRLGHASMNTTQETYLH 288


>gi|32471146|ref|NP_864139.1| integrase [Rhodopirellula baltica SH 1]
 gi|32396848|emb|CAD71816.1| integrase [Rhodopirellula baltica SH 1]
          Length = 292

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 50/155 (32%), Gaps = 10/155 (6%)

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMT 248
           + +L    L  +GLR ++  R              ++  K      V L D  + L+   
Sbjct: 11  RDKLLLTVLYATGLRVAEVARLQWSDFDFDRQQIRVQLGKGKKDRYVMLADDLLPLMRQL 70

Query: 249 ---PIGKETFFINNDKQ---KMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
                G    F +  ++    ++        K     +G+ K  + H  R   AT   ++
Sbjct: 71  WRHTKGVGYLFPSEGRRVDRHLSPRTIQRAVKQARILSGIGKAVTPHSFRHSFATHLIES 130

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335
           G     +    G   ++    YTK A      + +
Sbjct: 131 GTDIRFIQKLLGHTNLETTSLYTKVARMKATAVAS 165


>gi|325529777|gb|EGD06628.1| phage integrase family protein [Burkholderia sp. TJI49]
          Length = 361

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 43/346 (12%), Positives = 88/346 (25%), Gaps = 45/346 (13%)

Query: 13  KERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           +   +HG   Y+     G  IRL    +          L     +        +    ++
Sbjct: 12  RVYPKHG-AWYWVDPTSGHWIRLCSLKDDETT------LVARLAEERKKRERPEGSGDMR 64

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV-ESRKHTPS 131
            LI  Y +     +  +    ++  Y           +   +   H+   +         
Sbjct: 65  PLIDRYVRE----NKHLRKEKAWPKYGQYAGNGFRKANVADVKPAHVNKWLTVKYAGKLH 120

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF------ 185
                   +   F+W +       NPC  V R K+                ++       
Sbjct: 121 MQRVMRAFLSGFFQWCIDNGLRDTNPCREV-RIKKPKPRQTYIPDAHFAAIRAAMLQVTY 179

Query: 186 ----------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKT---- 229
                        G + +   +    +  R ++        +     +      KT    
Sbjct: 180 ERNGKEITADVPTGPRMQCFIDLCYLTAQRSTEIRNLKWSDVDRQAGVIHFVPSKTEDSS 239

Query: 230 GTIITVELPDGF-------MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
           G  +   +            ++     IG    F   + ++  A      +KA + +AG+
Sbjct: 240 GVRVDFVITPEIDAVLTRIREIDGRPTIGDVCVFRPKNGKRYAANTILKAWKAASDRAGL 299

Query: 283 NK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
                +   +R  + T    AG     L            ETY K 
Sbjct: 300 AGFRYTIKDIRAKALTDGERAGYNVKALQVAAAHTDAKMTETYIKQ 345


>gi|325271707|ref|ZP_08138195.1| Tn554 transposase A [Pseudomonas sp. TJI-51]
 gi|324103165|gb|EGC00524.1| Tn554 transposase A [Pseudomonas sp. TJI-51]
          Length = 376

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 47/312 (15%), Positives = 97/312 (31%), Gaps = 67/312 (21%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDY--RKITTKHI---RSGVESRKHTPSSAIQFLTS 139
            + +  +  ++  +  +      +      ++  +HI   R+ +  R  + S+  + L++
Sbjct: 47  RTRSPATWRTYADHLYEFFSFLEENALFWTRVNQEHIAVWRNSMLDRGLSRSTINKRLST 106

Query: 140 MRVLFKWAVRQEYVAINPCL----SVERPK---------------------RKTEGIRPW 174
               + W  RQ      P       V +PK                      + +  +  
Sbjct: 107 TSAFYTWCARQGLAEQLPFETQDVLVSKPKGFLAHVDASGNRLQANELTLRTQQQLPKFL 166

Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS----------- 223
           +  +  QF    S      +A+  +L  GLR  ++C   V+ L                 
Sbjct: 167 SIPEAVQFIGALSPRRTQLVAY-LMLLCGLRREEACALDVRVLPTPAGHSPSKAIKMTLD 225

Query: 224 --IKTQKTGTIITVELPDGFMKLL--------------AMTPIGKET--FFINNDKQKMN 265
             +   K      V +P      L                   G ET   F+  D  +++
Sbjct: 226 PSLTPTKGSKERWVMVPYDLAGHLFDYMMRDRPKLAGMYHKRHGAETTRLFLTRDGAELS 285

Query: 266 ATQFSIWFKAKATKAGVNKSAHGVRKFSAT----ISADAGATA---HELMATYGWKTVDQ 318
                + F+  + K+GV  + H +R    T      ++   T    H +    G  ++  
Sbjct: 286 LDGLDVTFQRASAKSGVKCTPHRLRHTFGTYEFLRMSERRGTDGALHWVRDRLGHSSITT 345

Query: 319 AETYTKGADRIR 330
            E Y   AD ++
Sbjct: 346 TEVYVHAADLLK 357


>gi|317121205|ref|YP_004101208.1| integrase family protein [Thermaerobacter marianensis DSM 12885]
 gi|315591185|gb|ADU50481.1| integrase family protein [Thermaerobacter marianensis DSM 12885]
          Length = 318

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 47/312 (15%), Positives = 91/312 (29%), Gaps = 52/312 (16%)

Query: 76  SEYRKSAH-WGSLAVNSRISFESYFDQII-----------RKSGDFDYRKITTKHIRSGV 123
            +Y ++      L  +    +                       D D         R  +
Sbjct: 9   EQYLETKRVERGLRTSRLEEYRRDLADFCRWLAGRLRKNPEDLTDADLAGFDRDGARRWL 68

Query: 124 ESRKHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP---KRKTEGIRPWTKE 177
                    PS+  +  +++   F+W V +  +  +P   +ERP   +R         + 
Sbjct: 69  AHLADRELAPSTRDRRWSTVGGWFRWMVAEGVLPRDPFAGLERPVRGERHKRLPVYLAET 128

Query: 178 DMQQFK---------------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222
           + ++                        +       LLY GLR S++       +  +  
Sbjct: 129 EAERLLRTVLSDEGLTPRQKAHHARLKERDHALVTTLLYQGLRISEAVGLRYGDVDFDED 188

Query: 223 SIKT-QKTGTIITVELP----DGFMKLLAMTPIGK------ETFFINNDKQKMNATQFSI 271
           +++   K      + L     +  ++ LA  P  K      +  +     Q +       
Sbjct: 189 TLRVIGKGDKERLLPLHRRTKEALLRYLATWPGPKKPKAPQDPLWWTLTGQPLTKNA--A 246

Query: 272 WFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGW----KTVDQAETYTKGA 326
             K    +AG+   SAH +R    T  A+AG     +    G      T    + Y   A
Sbjct: 247 AVKRHLVRAGLWRASAHKLRHTFGTRLAEAGVDLLVIKDLLGHATVATTQATTQIYAHVA 306

Query: 327 DRI-RLGIKNSR 337
            R  R  ++  R
Sbjct: 307 QRRLREAVEKIR 318


>gi|149774736|gb|ABR28408.1| integrase [Delftia tsuruhatensis]
 gi|151500312|gb|ABS12091.1| integrase [Delftia acidovorans]
          Length = 346

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 47/316 (14%), Positives = 99/316 (31%), Gaps = 66/316 (20%)

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSG 122
           P ++K L+ + R+   +   ++ +  ++  +             G    R++    +   
Sbjct: 15  PRSIK-LLDQVRERVRYLHYSLQTEKAYVYWAKAFVLWTARSHGGFRHPREMGQAEVEGF 73

Query: 123 VE----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINP-CLSVERPKRKTEGIRPWTKE 177
           +      ++  P++  Q L ++  L++  +  E     P    + RP  +       T +
Sbjct: 74  LTMLATEKQVAPATHRQALNALLFLYRQVLGMEL----PWMQQIGRPPERKRIPVVLTVQ 129

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITV 235
           ++Q   S    G++  LA   L  SGLR  ++    V+ +    +   +++ K      V
Sbjct: 130 EVQTLLS-HMAGTEALLA-ALLYGSGLRLREALGLRVKDVDFDRHAIIVRSGKGDKDRVV 187

Query: 236 ELPDGFMKLLAMT------------PIGKETFFI-------------------------- 257
            LP   +  L                 G+   ++                          
Sbjct: 188 MLPRALVPRLRAQLIQVRAVWGQDRATGRGGVYLPHALERKYPRAGESWAWFWVFPSAKL 247

Query: 258 -------NNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELM 308
                     +  +   + +   K    +AG+ K  S H +R   AT    AG     + 
Sbjct: 248 SVDPQTGVERRHHLFEERLNRQLKKAVVQAGIAKHVSVHTLRHSFATHLLQAGTDIRTVQ 307

Query: 309 ATYGWKTVDQAETYTK 324
              G   V     YT 
Sbjct: 308 ELLGHSDVSTTMIYTH 323


>gi|290770154|gb|ADD61913.1| putative protein [uncultured organism]
          Length = 403

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 52/385 (13%), Positives = 102/385 (26%), Gaps = 73/385 (18%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKGH--GRRIRLPYPHESTFIPAYMSALTGSTPKREYI 61
             ++P +     T  G   Y  R     G+ + L            + A         + 
Sbjct: 5   KTQIPKY--GTITLKGIQYYRTRITDADGKELSLYAATCEELYEKQLEARKQVEEIIFHR 62

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIR 120
             P       KWL+ +   SA    ++ ++   +     + II+  G+    ++T   IR
Sbjct: 63  QHPTVAEYGEKWLLMQ---SAK---VSASTLRGYTRDMTNYIIKPLGEMYMEEVTADDIR 116

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGI-RPWTKED 178
             +             +  +     +A  + + +  NPC  +     K        T + 
Sbjct: 117 LALVPLSKKSEGLYNKVNMLLKCIFYAAERNQILEHNPCAGISGKGGKPTKKKEALTDQQ 176

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQ------- 227
           +         G  P L     LYSGLR  +        +         S++         
Sbjct: 177 VAVLLDTVK-GLPPYLFIMLGLYSGLRREEILALQWDCVFLDEDTPYLSVRRAWRTEHNR 235

Query: 228 -------KTG-TIITVELPDGFMKLLAMTPIG--KETFFINNDKQKMNATQFSIWFK--- 274
                  KT      + +P   +  L  T      +    ++  + + A+QF   ++   
Sbjct: 236 PVISTVLKTPAAKRDIPIPKCLVDCLRETKENSISDYVIADSKGEPLAASQFQRVWQYVV 295

Query: 275 ----------------------------------AKATKAGVNKSAHGVRKFSATISADA 300
                                                     + + H +R    T    A
Sbjct: 296 VRSTKPRNYYKYVNGQSIKYTVTPTLGMTQKNQPKIRYTLDFDVTPHQLRHTYITNLLYA 355

Query: 301 GATAHELMATYGWKTVDQA-ETYTK 324
           G     +    G +      + Y K
Sbjct: 356 GVDPKTVQYLAGHENSKTTMDIYAK 380


>gi|295102937|emb|CBL00482.1| Site-specific recombinase XerD [Faecalibacterium prausnitzii L2-6]
          Length = 391

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 42/274 (15%), Positives = 85/274 (31%), Gaps = 45/274 (16%)

Query: 95  FESYFDQIIRKSGDFD---YRKITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVR 149
           ++   ++II             +    ++     +  +   +S I +  ++    K+AV+
Sbjct: 95  YQGMVERIIAPYFRKRGIKLVDLKATDLQDFYTKQLERVKANSVIHYHANIHKALKYAVK 154

Query: 150 QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDS 209
            + +  NP   VERPK+       ++ E++       +EG++  +      + GLR S+ 
Sbjct: 155 IDLIPTNPADKVERPKKNAFKGSYYSAEEIHALTEV-AEGTKLEIPVLLASFYGLRRSEV 213

Query: 210 CRAGVQ--HLQNNIFSIK------------------TQKTGTII-TVELPDGFMKLLAMT 248
                     + N   IK                    KT + + T+ L       L M 
Sbjct: 214 LGLKWDAIDFEENTLEIKHIVTQASIDGKKVLVQADRAKTKSSLRTLPLVPPIRDRLLML 273

Query: 249 PIGKETF----------------FINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRK 291
              +ET+                 ++     +     S  F     K G+     H +R 
Sbjct: 274 KGQQETYRRLCGKSYNRDYLGYLCVDEIGNIIRPNYVSEQFPKLLEKNGLRPIRFHDLRH 333

Query: 292 FSATISADAGATAHELMATYGWKTVDQAE-TYTK 324
             A++    G    ++    G          Y  
Sbjct: 334 SCASLLLANGVPMKQIQEWLGHSDFSTTANIYAH 367


>gi|134281183|ref|ZP_01767892.1| phage integrase [Burkholderia pseudomallei 305]
 gi|134247489|gb|EBA47574.1| phage integrase [Burkholderia pseudomallei 305]
          Length = 411

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 49/310 (15%), Positives = 106/310 (34%), Gaps = 32/310 (10%)

Query: 52  TGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY 111
            G+ P  E      +K  +++ LI++YR+     +LA +++ S+     ++ R  G    
Sbjct: 83  QGTNPAVEKRKEKARKDWSVRQLIADYRE-RVLVTLADSTQRSYGRNLIRVERGMGSLSV 141

Query: 112 RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV-------ERP 164
           R +    + + +E  K     A      ++ +FK AV +  +  NPC  +       +RP
Sbjct: 142 RIVGAADVVAEIERTKLGWVEAFTLWCVLKAIFKHAVGKRLIDANPCAGIVLEAIIGKRP 201

Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIF 222
             +   +   T E++    +  +       A    L +G+R S+   +     HL    +
Sbjct: 202 PVRQRLM--LTHEELNVLMN-ANMRDVNLYAVRIALATGVRISELYTSLRANLHLDEARW 258

Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKET---FFINNDKQKMNA-TQFSIWFKAKAT 278
            I   KTG  + + L    ++          T           +++     +   K    
Sbjct: 259 HIPASKTGPAMDIPLAPIVIEWFEHLVDRAGTSEFILPARLSNRLHRHDGDTHVSKDAIR 318

Query: 279 KAGVNK------------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           +A ++             + H +R    +     G +          K       Y +  
Sbjct: 319 EA-IDYWIDNHEPQIRRFTPHDLRSTMKSHMRKLGVSRDISEMCLNHKLAGVEGIYDQYT 377

Query: 327 --DRIRLGIK 334
             D  ++ ++
Sbjct: 378 YWDERKVALE 387


>gi|312878202|ref|ZP_07738129.1| integrase family protein [Caldicellulosiruptor lactoaceticus 6A]
 gi|311795015|gb|EFR11417.1| integrase family protein [Caldicellulosiruptor lactoaceticus 6A]
          Length = 324

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 42/290 (14%), Positives = 95/290 (32%), Gaps = 22/290 (7%)

Query: 55  TPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII---RKSGDFDY 111
             K+E       +   ++  I ++       SL+  +   ++      +   +++     
Sbjct: 2   INKKECRFKRVVEKKKIEEAIQDFLLDCEVRSLSKWTIDFYKRTLKPFVFFGKQNSVEYV 61

Query: 112 RKITTKHIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168
             IT + +   +   K +    ++   +L  +R    +  ++E++     + +   K + 
Sbjct: 62  NDITKEMVNKYIAHLKDSIENTTTINTYLRGLRTFLNFLKKEEFLENE--IEINMLKEEE 119

Query: 169 EGIRPWTKEDMQQFKSFWSE----GSQPRLAFEF--LLYSGLRCSDSCRAGVQHLQ--NN 220
           +    ++ ED+++            ++ R       LL +G R S      V  +   N 
Sbjct: 120 KIKETYSDEDIKKLLKKPDLKKCSFAEYRNWVLVNYLLETGNRLSSVINIKVSDVDLENG 179

Query: 221 IFSIKTQKTGTIITVELPDGFMKLLAMTPI-----GKETFFINNDKQKMNATQFSIWFKA 275
           I +IK  K  +     + +   K+L            +  F +    +M         + 
Sbjct: 180 IVTIKHSKNKSHYFSPISNTMCKILREYIATWNLKEDDYLFPSQSGAQMTKNTIEKAIRD 239

Query: 276 KATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              K GV   S H  R   A           +L    G KT++    Y +
Sbjct: 240 YNKKRGVKLTSIHAFRHTFAKNYIKTNGNPFKLKQLLGHKTLEITNRYVR 289


>gi|296169264|ref|ZP_06850912.1| prophage integrase [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295896069|gb|EFG75740.1| prophage integrase [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 363

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 49/338 (14%), Positives = 103/338 (30%), Gaps = 34/338 (10%)

Query: 12  TKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
            K R     + Y  +     R +      +        A   +         PR     L
Sbjct: 3   IKRRETKDGVRYDVQWRLPDRSKRKKSFRTEREARQFEARLVTDSAAGVRVDPRGGKILL 62

Query: 72  KWLISEYRKSAHWGSLAVNSRISFE-SYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT- 129
           + +   +  S     L+   R  +E ++  +I  + G +   +I  + I+  V +   + 
Sbjct: 63  RNVYRSWLASR--PDLSAKVRRGYEDNWRLRIEPQFGSWPIARIDHESIQRWVNAMSASG 120

Query: 130 --PSSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             P +     + +++    AV ++  +  NP    + P  +       T  ++       
Sbjct: 121 LGPRTVRWTHSVLKMTLDRAVEEDQLLGKNPASRTKFPPMRQATHVYLTVGEVATLAQTC 180

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII------------- 233
                       L Y+GLR  +     V+ +      I+ +++ T +             
Sbjct: 181 GA---QGDVVLLLAYTGLRFGELTGLNVEDVDLGARRIRVRRSMTQVGGKLVEGNPKSQA 237

Query: 234 ---TVELP----DGFMKLLAMTPIGKETFFINNDKQKMNATQFS---IWFKAKATKAGVN 283
              +V +P          L   P G      +    +++   +     W K+       N
Sbjct: 238 GRRSVPIPERLMPALKARLDARPCGAPA-IASPKGSRLSLENWKRAVNWRKSVTEIGRDN 296

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
              H +R   A++S  AGA    L    G  ++     
Sbjct: 297 LRVHDLRHTYASLSRRAGADLRLLQKAMGHASITVTAH 334


>gi|255972569|ref|ZP_05423155.1| predicted protein [Enterococcus faecalis T1]
 gi|256762723|ref|ZP_05503303.1| integrase [Enterococcus faecalis T3]
 gi|257422396|ref|ZP_05599386.1| predicted protein [Enterococcus faecalis X98]
 gi|255963587|gb|EET96063.1| predicted protein [Enterococcus faecalis T1]
 gi|256683974|gb|EEU23669.1| integrase [Enterococcus faecalis T3]
 gi|257164220|gb|EEU94180.1| predicted protein [Enterococcus faecalis X98]
          Length = 377

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 56/314 (17%), Positives = 115/314 (36%), Gaps = 42/314 (13%)

Query: 50  ALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGS-LAVNSRISFESYFD-QIIRKSG 107
           AL+    + +     ++  +T K +   +   A + + +   +    E  F   I+ + G
Sbjct: 48  ALSRLELEVDSKGFVKQNYSTFKDVYELWY--AQYVNTVKPITAGHTERMFRLHILPEFG 105

Query: 108 DFDYRKITTKHIRSGVESRKHTPSSAIQFLTSM-RVLFKWAVRQEYVAINPCLSVERPKR 166
           +    K+T    +  V        SA   L S+ + +  +AV Q+ + INP   V  PK+
Sbjct: 106 NIKINKLTKLMCQKAVNKWS-KEYSAFHLLKSITQKMLHYAVAQDIIDINPMQYVVMPKK 164

Query: 167 ----KTEGIRPWTKEDMQQFKSFWSE--GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220
               +T+  +     +++ F +   E    Q  L F  L ++G+R  +      + +  +
Sbjct: 165 DKTNETKKKQFLELSELKDFLAEAKETLNFQDYLIFRVLAFTGIRKGELYALTWEDINIS 224

Query: 221 IFSIKTQKT----GTIITVELPDGFMKL----LAMTPIGKETFFINNDKQKMNATQF--- 269
              +   KT    G    +  P          L  T + +   +  + KQ++    F   
Sbjct: 225 YKQLTVNKTLTRIGKEYIISTPKTKASNRTIGLDDTTVSELIVWKKHQKQELLKYGFKTK 284

Query: 270 ----SIWFKAK--------------ATKAGVNKSAHGVRKFSATISADAGATAHELMATY 311
                + F  K              +++   + S H  R   A++  ++GAT  ++    
Sbjct: 285 SNDKQLIFHRKNNTLHYPEHINFLLSSEMKTSLSPHSFRHTHASLLFESGATIKDVQKRL 344

Query: 312 GWKTVDQA-ETYTK 324
           G   V+   + YT 
Sbjct: 345 GHTNVNTTMDIYTH 358


>gi|296005355|ref|XP_002809005.1| recombinase, putative [Plasmodium falciparum 3D7]
 gi|225631942|emb|CAX64286.1| recombinase, putative [Plasmodium falciparum 3D7]
          Length = 490

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 55/294 (18%), Positives = 109/294 (37%), Gaps = 36/294 (12%)

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
           +   LK  I E         ++ N+    + ++  I+ K G ++  ++   +  S ++  
Sbjct: 188 EKIKLKKYIEEIYLPIRKEEVSENTFRVEKGFWKDILPKLGKYELHELGPNNWESFLKYL 247

Query: 127 KHT---PSSAIQFLTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPWTKEDMQQ 181
           K     P +   + ++ +   K+A+ ++Y+    N    +++       I P + ++++ 
Sbjct: 248 KSKNCSPRTMALYQSTYQQSLKYALYRDYLKSVHN-FRKIKKSTIPRRKITPLSPKEIEL 306

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTG-TIITVELP 238
                S+    R  F   +  GLR S+  R   + +  +     IK QKT  +  +V + 
Sbjct: 307 LLKNSSD--MHRAIFALSIGIGLRPSEVLRIHWEDINFERKEIFIKGQKTKYSNTSVPMT 364

Query: 239 ----DGFMKL--LAMTPIGKETFFINNDKQKMNA-------TQFSIWFKAKATKAGVNKS 285
               +  +K   +   PI    F+    K K N          F    K  A +AG+  S
Sbjct: 365 NFAFNELLKWWEIENKPIKGLCFYSETIKNKFNYTQTKTPLKTFKTALKGAAKRAGLEIS 424

Query: 286 AHG---------VRKFSATISADAG--ATAHELMATYGWKTVDQ-AETYTKGAD 327
             G         +R   ATI+A +          A     +     +TYTK  +
Sbjct: 425 EDGKSRRIFPYLLRHSFATIAATSNPPVPLPVAQAIMRHSSSKMLLDTYTKAGN 478


>gi|119384162|ref|YP_915218.1| phage integrase family protein [Paracoccus denitrificans PD1222]
 gi|119373929|gb|ABL69522.1| phage integrase family protein [Paracoccus denitrificans PD1222]
          Length = 351

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 44/319 (13%), Positives = 96/319 (30%), Gaps = 33/319 (10%)

Query: 47  YMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS 106
           +   + G   + E I++      T   LI  +R  A    +      S  +  D +  + 
Sbjct: 36  WARTVEGKIDRGEPIHTRVAAAKTFGDLIDLHR--ADLADVGRTLGRSKAASLDFLALRL 93

Query: 107 GDFDYRKITTKHIR---SGVESRKHTPSSAIQFLTSMRVLFKWAVR-QEYVAINPCLSVE 162
           G     ++  + +             P +    L  ++ +   A      +A  P   V+
Sbjct: 94  GALKPAELGREKLVEFGRQRAKEGAGPVTVGIDLGYIKTILSHAAAVHGIIA--PTEGVD 151

Query: 163 -------RPKRKTEGIRPW---TKEDMQQFKSFWSEGSQPRLAFE----FLLYSGLRCSD 208
                  R     +G       ++E++           +  +       F + + +R  +
Sbjct: 152 LARIALTRLGLVGKGNERDRRPSEEEIDAILKALESNPRQFIPVARVVRFAIATAMRQDE 211

Query: 209 SCRAGVQHL--QNNIFSIK-----TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK 261
             RA  +    +  +  I+      +KTG    + L            I ++   + +  
Sbjct: 212 ISRARWEDYNPRTKMLLIRDRKDPRRKTGNDQRIPLL-SVSGFDPCALIEEQRALVGSRG 270

Query: 262 Q--KMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           +    N       F+      G+ +   H +R  + +   +AG T  ++    G K    
Sbjct: 271 RIFPYNGRSIGTAFRRVCRTLGIEDLHFHDLRHEATSRLFEAGFTIEQVALVTGHKDWKM 330

Query: 319 AETYTKGADRIRLGIKNSR 337
              YT         +  SR
Sbjct: 331 LRRYTHIRPEGLHALAASR 349


>gi|325271013|ref|ZP_08137599.1| hypothetical protein HMPREF9141_2809 [Prevotella multiformis DSM
           16608]
 gi|324986659|gb|EGC18656.1| hypothetical protein HMPREF9141_2809 [Prevotella multiformis DSM
           16608]
          Length = 334

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 41/279 (14%), Positives = 99/279 (35%), Gaps = 33/279 (11%)

Query: 77  EYRKSAHWGSL----------AVNSRISFESYFDQIIRKSGDFDYRKITTK---HIRSGV 123
           EY++ + +              V +  + ++    + R   +  + +I  K      + +
Sbjct: 48  EYKEESSFLDWMEQEIDKETYTVGTIANHKATMAVLRRFKRNMTFTQIDYKCICDFENFL 107

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM---- 179
           +   +  ++  +F+   R     A+ +E +   P       K +    +  T+ ++    
Sbjct: 108 KGAGYAVNTIAKFMKIFRRFVNLAIDEELMTAYPFRKY-HIKTENVQKQSLTERELKRIE 166

Query: 180 --QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTII 233
             +  ++   E  +    F F +YSGLR SD      QH+    +N    ++ QKT   +
Sbjct: 167 EKEAREALTEEEGKVIKGFLFSVYSGLRFSDIVNVTKQHVKNIYRNKWVVMRMQKTDHEV 226

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKM---NATQFSIWFKAKATKAGVNK--SAHG 288
            + +   F    A      +T       +        + ++  K    +  +++  + H 
Sbjct: 227 RIPISKMFGGKAAAMVQENKT----TTGKLFQLPCNARCNLVLKRVLKRFNIHRHITFHC 282

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
            R   AT+    G +   +    G +++   + Y+   D
Sbjct: 283 ARHTCATVLLSKGVSLPIIQHILGHQSIKTTQVYSAVKD 321


>gi|282859589|ref|ZP_06268693.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
 gi|282587640|gb|EFB92841.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
          Length = 407

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 44/260 (16%), Positives = 85/260 (32%), Gaps = 25/260 (9%)

Query: 85  GSLAVNSRISF---ESYFDQIIR---KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLT 138
              AV +   +     Y  + I+   K  D    ++T + IR      K+        + 
Sbjct: 125 KDRAVRTYRKYLTVRKYVAEFIKFQYKRSDMSMNELTEEFIRDFCLYLKNVIGLTQSTIW 184

Query: 139 SMRVLFKW----AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ--- 191
              +  K     A     +  NP  ++       +     T+E++  F     E      
Sbjct: 185 IYSIPLKHIVTAAHYNGKIQRNP-FAMYHVAPDHKEREFLTEEELDIFAGIELENPNFAF 243

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
            R  F F  ++G+   D       ++     +     + QKTG    ++L D  ++++  
Sbjct: 244 ARDLFMFGCWTGISFVDIKNLTEDNVAIISGSPWIVSQRQKTGVPFKIKLIDAAIQIIER 303

Query: 248 -TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATA 304
             P+ K+    N      +    +   K  A   G+ K  S H  R   A ++ + G   
Sbjct: 304 YKPLRKDMHLFNIG----SLDMVNKRIKKVAKMCGIKKRISFHVSRHSFAVLALNYGMPI 359

Query: 305 HELMATYGWKTVDQAETYTK 324
             +    G   +   + Y K
Sbjct: 360 ESVSKILGHTDIATTQIYAK 379


>gi|282877849|ref|ZP_06286661.1| site-specific recombinase, phage integrase family [Prevotella
           buccalis ATCC 35310]
 gi|281300060|gb|EFA92417.1| site-specific recombinase, phage integrase family [Prevotella
           buccalis ATCC 35310]
          Length = 431

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 49/292 (16%), Positives = 95/292 (32%), Gaps = 29/292 (9%)

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLT 138
           R    + +L  + R   E   ++ ++        +   +  R  ++ R    S+    L 
Sbjct: 123 RAEGTYLNLFYSDRNLREFVENKGVQDISIETITEDLFEEYRFFLKKRGLKASTVNSNLC 182

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WSEGSQPRLA 195
            +  L   AV +  +  NP  + +  K + + IR   K D+ +  +      E    RL 
Sbjct: 183 WLSRLMFRAVSKRIIRCNPFENAKFEKEEKK-IRFLQKSDVMKLMAMKMNDKEAELARLM 241

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQ---NNIFSIK--TQKTGTIITVELPD----------- 239
           F F  ++GL  SD      +H+Q   +    I+   QKT     V L             
Sbjct: 242 FVFSCFTGLAISDMENLEYKHIQTAADGQMYIRKERQKTKVEFIVPLHPIAETIISHCQK 301

Query: 240 --GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSAT 295
                ++        +    + D  +                 G+    S H  R    T
Sbjct: 302 EPERSEVQQTVKEKGDHLVFHRDCSRSVMDAKLSIVGKAC---GICQRLSYHMARHTFGT 358

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
           +S  AG     +    G  ++   + Y +  DR     ++  R+ +   + +
Sbjct: 359 MSLSAGIPIESIAKMMGHASISSTQVYAQVTDRK--ISEDMDRLIAKQSAKE 408


>gi|237785808|ref|YP_002906513.1| putative phage-related integrase [Corynebacterium kroppenstedtii
           DSM 44385]
 gi|237758720|gb|ACR17970.1| putative phage-related integrase [Corynebacterium kroppenstedtii
           DSM 44385]
          Length = 361

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 49/322 (15%), Positives = 103/322 (31%), Gaps = 35/322 (10%)

Query: 22  IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKS 81
           + Y+   +G+R +      + +     +A             P     T++ L   + + 
Sbjct: 17  VQYYDPANGKRQK--RGFATKWQAENWAAENTVDLTTGQWRDPAGANITVETLSKTWWR- 73

Query: 82  AHWGSLAVNSR-ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSM 140
                L  ++           ++   G      +    I++ V +   + SS       +
Sbjct: 74  -GRQHLKPSTLDRDASRLHGVVLPMWGKRKIGTLRKSEIQAWVSASPLSGSSIRHAHNLL 132

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200
             +   AV   Y+  NP   V+ P +        T   +++     +  +  +    ++L
Sbjct: 133 AQILDVAVDDNYLKSNPARGVKLPPKGKPVKVYLTPTQLERL----AHHAGDKAVVVWVL 188

Query: 201 YS-GLRCSDSCRAGVQHLQN---------NIFSIKTQ------KTGTIITVELPDGFMKL 244
            + GLR  +     V+ +           ++  IK +      KT    TV +    M++
Sbjct: 189 GTVGLRWGELVGLKVEDVDELHSRLRINRSVIYIKGKPQETLPKTHERRTVSVSLPVMRM 248

Query: 245 LAMTPIGKET---FFINNDKQKMNA-TQFSIWFKAKATKAGVN------KSAHGVRKFSA 294
           +     G+      F + D   +        WF A   KA          + HG+R  +A
Sbjct: 249 IHEQAAGRLPSAWLFPHTDGGPLKRADGTKGWFAAAVKKAQAEDPSFPRITPHGLRHVAA 308

Query: 295 TISADAGATAHELMATYGWKTV 316
            +   AGA    +    G  + 
Sbjct: 309 GLLVSAGANVKVVQRQLGHASA 330


>gi|15900995|ref|NP_345599.1| phage integrase family integrase/recombinase [Streptococcus
           pneumoniae TIGR4]
 gi|111658171|ref|ZP_01408867.1| hypothetical protein SpneT_02000651 [Streptococcus pneumoniae
           TIGR4]
 gi|14972606|gb|AAK75239.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae TIGR4]
          Length = 387

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 50/305 (16%), Positives = 93/305 (30%), Gaps = 45/305 (14%)

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKH 118
           Y    +   TT   L+  +  S    ++  N+R S E      ++   GD+   K+TT  
Sbjct: 59  YTVKDKPTITTYNELVKVWWDSYK-NTVKPNTRQSMEGLVRVHLLPVFGDYKLSKLTTPI 117

Query: 119 IRSGVESRKHTPSS------AIQFL--TSMRVLFKWAVRQEYVAINPCLSVERPKRKTE- 169
           ++  V       +       A   L     + + K+ V  + +  NP   V  P+++ + 
Sbjct: 118 LQQQVNKWADKANKGEKGAFANYSLLHNMNKRILKYGVAIQVIQYNPANDVIVPRKQQKE 177

Query: 170 --GIRPWTKEDMQQFKSFWS-------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220
              ++    ++++QF  +         E     + ++ LL +G R S++       +   
Sbjct: 178 KAAVKYLDNKELKQFLDYLDALDQSNYENLFDVVLYKTLLATGCRISEALALEWSDIDLE 237

Query: 221 IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK----------------- 263
              I   KT                   PI K T  +    +                  
Sbjct: 238 SGVISINKTLNRYQEINSPKSSAGYRDIPIDKATLLLLKQYKNRQQIQSWKLGRSETVVF 297

Query: 264 --MNATQ-----FSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKT 315
                                  AGV N S HG R    T+   A  +  ++    G   
Sbjct: 298 SVFTEKYAYACNLRKRLNKHFDAAGVTNVSFHGFRHTHTTMMLYAQVSPKDVQYRLGHSN 357

Query: 316 VDQAE 320
           +   E
Sbjct: 358 LMITE 362


>gi|120435585|ref|YP_861271.1| phage integrase family protein [Gramella forsetii KT0803]
 gi|120435707|ref|YP_861393.1| phage integrase family protein [Gramella forsetii KT0803]
 gi|117577735|emb|CAL66204.1| phage integrase family protein [Gramella forsetii KT0803]
 gi|117577857|emb|CAL66326.1| phage integrase family protein [Gramella forsetii KT0803]
          Length = 330

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 49/149 (32%), Gaps = 23/149 (15%)

Query: 198 FLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGF----------MKLL 245
            L  +G+R  ++     + +  +     ++  K G    + +                LL
Sbjct: 153 LLYCTGIRMGEAIALKDEDVNLEEGYLLVRDSKNGKQRIIPISQSLVSVCREYLEYRNLL 212

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSAT----ISAD 299
                    FF+  +  K        WFK    +AG+  SA  H +R   A       A+
Sbjct: 213 PSRKTSSGYFFVKVNGHK-CGQSVRAWFKKCLDRAGIPGSARLHDLRHTFAVTSLAQMAE 271

Query: 300 AG----ATAHELMATYGWKTVDQAETYTK 324
           +G    A+   L    G +++     Y +
Sbjct: 272 SGIDLYASLPILSNYLGHQSIGATNHYVR 300


>gi|227539186|ref|ZP_03969235.1| phage integrase family protein [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227240868|gb|EEI90883.1| phage integrase family protein [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 406

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 42/287 (14%), Positives = 91/287 (31%), Gaps = 36/287 (12%)

Query: 85  GSLAVNSRISFE---SYFD-QIIRKSG--DFDYRKITTKHIRSG----VESRKHTPSSAI 134
                N+   +    ++    + +  G  D   R I    I             +  SA 
Sbjct: 126 KGFKPNTLKGYNTSVAHLTSYLEKCYGETDIAIRHIDHAFITGYEFFLRSDMGCSVVSAA 185

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS---Q 191
           +++  +R +    +   ++   P    +  K K       T +++ +        +    
Sbjct: 186 KYMKHLRKIINQCLAHRWITETPFAFYKT-KAKPREKEFLTSDELDRIAQKEFSITRLAH 244

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQ---NNIFSI--KTQKTGTIITVELPDGFMKLLA 246
            R  F F  Y+GL  +D  +     +    +    +    +KT T   + L    ++++ 
Sbjct: 245 VRDIFVFCCYTGLSYADVQKLQKTDIAKGIDGRLWVLTSREKTKTSSNIPLLPQALEIIE 304

Query: 247 MTP-----IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSAT--IS 297
                   + +         QKMN+     + K  A   G+ K  + H  R   AT    
Sbjct: 305 RYADYPSCVARGMVLPVLSNQKMNS-----YLKEIADLCGITKKLTFHMARHTFATTVTL 359

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS--RRISSV 342
           A+       +    G   +   + Y K  D       ++  +R++ +
Sbjct: 360 ANN-VPIETVSKMLGHTNIKTTQHYAKLLDTRIGSDMDALQKRLAGI 405


>gi|153812497|ref|ZP_01965165.1| hypothetical protein RUMOBE_02896 [Ruminococcus obeum ATCC 29174]
 gi|149831422|gb|EDM86510.1| hypothetical protein RUMOBE_02896 [Ruminococcus obeum ATCC 29174]
          Length = 378

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 45/330 (13%), Positives = 111/330 (33%), Gaps = 45/330 (13%)

Query: 57  KREYINSPRKKPT-----TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFD 110
           K+E ++ P K        T   +  E+        L   S   + +  +  ++    + D
Sbjct: 51  KKECLSLPEKSTGNFSIHTFADVAGEWLLYKK-RILKETSISKYNNIINIHLLPFFREQD 109

Query: 111 YRKITTKHIRSGVESR---------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV 161
              IT + + +   +             P + +  L+ M+ +  +A  ++Y+ I P L  
Sbjct: 110 IHNITLEQMEAFYNALLMTKTAKGTALAPKTTLDILSVMKAILFYATTKKYMNILPVLRF 169

Query: 162 ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR-LAFEFLLYSGLRCSDSCRAGVQHLQNN 220
           E  +   + +   +  + +   ++       R L     +Y+G+R  ++C    + +   
Sbjct: 170 EY-RAVPKKLVVLSGRNQKILSTYLCLNLTYRNLGLLICMYTGIRLGEACALTWEDISLT 228

Query: 221 IFSIKTQKT-----------------------GTIITVELPDGFMKLLAMTPIGKETFFI 257
              I   KT                        +I T+ LP   ++L+  + +  + + +
Sbjct: 229 EGYIYIHKTMQRIQKEHNGKKTMIIIAEPKTQSSIRTIPLPRQLIQLIKSSKLPMQGYLL 288

Query: 258 NNDKQKMN-ATQFSIWFKAKATKAGVNKS-AHGVRKFSATISADAGATAHELMATYGWKT 315
               ++      +   FK    +  + ++  H +R   AT   + G     L    G   
Sbjct: 289 TGSYERYIEPRNYQYHFKKILQQCKIPQTNFHTLRHTFATRCVELGFDVKTLSEILGHSN 348

Query: 316 VDQA-ETYTK-GADRIRLGIKNSRRISSVV 343
           ++     Y     +  +  +    ++ +V 
Sbjct: 349 INITLNRYVHPSFNLKKQNMNKMNKLIAVK 378


>gi|324999072|ref|ZP_08120184.1| phage integrase [Pseudonocardia sp. P1]
          Length = 381

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 60/360 (16%), Positives = 114/360 (31%), Gaps = 38/360 (10%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEY 78
           G+    +    GRR   P             A   +   R+    P      L+    ++
Sbjct: 21  GRYQASYLGPDGRRRAAPDTFARKREAEQWLAAVETELLRDDWTDPALGKIPLREFAEQW 80

Query: 79  RKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFL 137
                   ++  +R  + S +   +    GD+   +I+T  IRS   +      S  +  
Sbjct: 81  IAE---HKISRRTREEYASVWRLHLASYLGDYPIGQISTDLIRSWRATLLREGRSEDRTA 137

Query: 138 TS---MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
            +   +R +   AV    +  NPC      + +T      T   + +         + R+
Sbjct: 138 KAYRLLRAVLNTAVDDGLIKRNPCRIKGAGQHRTPERPTATVAQVTKLSGLVPP--RFRV 195

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT------QKTGTI-----------ITVEL 237
                 ++GLR  +        +  +  ++         K G I            TV L
Sbjct: 196 LVLAAAFTGLRWGELVALRRCDIDLDGGAVHVYRRLAEHKNGEIEAGPTKSVAGARTVAL 255

Query: 238 PDGFMKLLA------MTPIGKETFFINNDKQKMNATQF--SIWFKAKATKAGVNK--SAH 287
           PD  +  L            +   F  +    +    F  +  +      AG+      H
Sbjct: 256 PDVLVTELREHIAEYAEDGTEGLVFTGDRDGPLRRGNFHRATAWTRTVVAAGLPSGFHFH 315

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
            +R     ++A AGA+  ELM   G  ++  A  Y          I  ++R++ +V  D+
Sbjct: 316 DLRHTGNHLAATAGASTRELMHRMGHGSMRAALIYQHATTERDRAI--AQRLNDLVQGDE 373


>gi|227355962|ref|ZP_03840354.1| integrase [Proteus mirabilis ATCC 29906]
 gi|227163950|gb|EEI48852.1| integrase [Proteus mirabilis ATCC 29906]
          Length = 329

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/202 (14%), Positives = 56/202 (27%), Gaps = 20/202 (9%)

Query: 130 PSSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           P +    L   R +F    R   +   NP  ++   +     +   + E + Q      +
Sbjct: 120 PRTTNLELAYFRAMFNELHRLGEWKDDNPLKNIRSFRTDESEMAFLSDEQIIQLLEECDK 179

Query: 189 GSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
                L    +  L +G R S++       +     +    K     TV +         
Sbjct: 180 SKAKDLSIIVKIALSTGARWSEAEGLTSSQVTPYKITFTKIKGKRNRTVPISKVL---YD 236

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK----SAHGVRKFSATISADAGA 302
             P  +   F          T     F+    + G+      S+H +R   A+     G 
Sbjct: 237 EIPKKRGALF----------TPCYSAFRMAMKRTGIELPHRQSSHVLRHTFASHFMMNGG 286

Query: 303 TAHELMATYGWKTVDQAETYTK 324
               L    G   +     Y+ 
Sbjct: 287 NILVLQRILGHTDIKMTMRYSH 308


>gi|255657789|ref|ZP_05403198.1| tyrosine recombinase XerD [Mitsuokella multacida DSM 20544]
 gi|260849979|gb|EEX69986.1| tyrosine recombinase XerD [Mitsuokella multacida DSM 20544]
          Length = 265

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/255 (11%), Positives = 77/255 (30%), Gaps = 21/255 (8%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           L  ++    H    + N+  ++ +          D    +I         +S K      
Sbjct: 6   LWHDFLDDVHATK-SDNTYKNYRNALRYFK----DGSLDEIKLFLENDLADSTK------ 54

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
            Q L  + +  ++    +         ++  +         T +D++          + R
Sbjct: 55  KQTLKVLCIALEY---NDMYDKAHKKLIKSYRPNVTIQECPTDKDVELVWGNLLTH-RDR 110

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHL-QNNIFSIKTQKTGTIITVEL-----PDGFMKLLAM 247
             F  + Y+GLR  +     +  +   +   ++  K      + L            +  
Sbjct: 111 AMFALMAYNGLRVGEVVGLDMDDILNGHRLRLRNTKGKRDAIIPLVHPRVLSSLKAYIKE 170

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHEL 307
                   F+N+   +M+    + + + +    G+   AH +R++ A   +  G    ++
Sbjct: 171 RKSESPALFLNHRGVRMSCNGLAQFIRNEFHDNGLAFHAHSLRRYFANTLSRNGIPVQDI 230

Query: 308 MATYGWKTVDQAETY 322
                  ++     Y
Sbjct: 231 QVAMRHASITTTMGY 245


>gi|319901621|ref|YP_004161349.1| integrase family protein [Bacteroides helcogenes P 36-108]
 gi|319416652|gb|ADV43763.1| integrase family protein [Bacteroides helcogenes P 36-108]
          Length = 407

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 51/275 (18%), Positives = 97/275 (35%), Gaps = 35/275 (12%)

Query: 93  ISFESYFDQIIRKSGDFDYRKITTKHI-RSGVESRKHTPS-----SAIQFLTSMRVLFKW 146
             +    + +  K    D       H+  +  E+   T S     +  +F+ + R++   
Sbjct: 139 RCYRRMEEFMKAKYNITDIALKEINHMFITDFETYLRTVSLCNENTTAKFMQTFRMIVIM 198

Query: 147 AVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQQFKSF---WSEGSQPRLAFEFLLYS 202
           A    ++  +P ++ + R KR   G    T  ++Q+            Q R  F F  ++
Sbjct: 199 AKNNGWIFTDPFVNYKIRLKRVDRGY--LTDAELQKIMKKKFPTKRLEQVRDVFIFSCFT 256

Query: 203 GLRCSDSCRAGVQHLQ---NN--IFSIKTQKTGTIITVELPDG----FMKLLAMTPIGKE 253
           GL   D        +    +         QKT T + V L         K     P G+ 
Sbjct: 257 GLAYIDLKTLKASEISISFDGKPWIMKHRQKTDTPVNVPLLKIPLAILKKYEGQLPKGEL 316

Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA-GATAHELMAT 310
              ++N K        + + K      G+NK  + H  R   AT +  A G     +   
Sbjct: 317 LPVLSNQK-------LNSYLKEIGDLCGINKNITFHFARHTFATTTTLAKGVPIETVSKM 369

Query: 311 YGWKTVDQAETYTK-GADRIRLGIKNSRRISSVVD 344
            G   ++  + Y +   D+IR   K+ ++++  +D
Sbjct: 370 LGHTNIETTQIYARITNDKIR---KDMQQLAGKLD 401


>gi|241762668|ref|ZP_04760738.1| integrase family protein [Zymomonas mobilis subsp. mobilis ATCC
           10988]
 gi|241372739|gb|EER62461.1| integrase family protein [Zymomonas mobilis subsp. mobilis ATCC
           10988]
          Length = 307

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 43/283 (15%), Positives = 93/283 (32%), Gaps = 29/283 (10%)

Query: 74  LISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFD--------YRKITTKHIRSGVE 124
           L +++ +   +    + +   ++ +   + I   G+           +K     IR+ + 
Sbjct: 16  LATQWEQYLQFSLRRSPHGIRAYMATVHRFISFLGNHRGDLIDKNTLQKTDIAEIRAFLA 75

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
            R+ +  +       +  +  +     ++ ++P  +++  + K    RP + ED      
Sbjct: 76  YRRQSGLANSSVAREISGIRAFLR---FIGLDPIPAIKGARVKKGIPRPLSPEDAVALAK 132

Query: 185 FWSEGS-------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237
             SE +       +       L  SGLR S++     + L          K   I  V L
Sbjct: 133 EASEEASEQWIEARDLALLLLLYGSGLRISEALNLTCEILPLQTTLRVVGKRSKIRIVPL 192

Query: 238 PDGFMKLLAM-------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHG 288
            +   + +            G + FF       ++A       +      G++   + H 
Sbjct: 193 LEKVKRAMETYVRLCPYAFSGSQPFFRGAKGGVLSADVLRRTVRKARYHLGLDNKATPHA 252

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           +R   A+     GA    L    G  ++   + YT   D  RL
Sbjct: 253 LRHSFASHLLGRGADLRSLQELLGHASLSSTQIYT-AVDAARL 294


>gi|254441051|ref|ZP_05054544.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
 gi|198251129|gb|EDY75444.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
          Length = 460

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 45/297 (15%), Positives = 99/297 (33%), Gaps = 20/297 (6%)

Query: 41  STFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD 100
           + F P + +A       +++ +  R +      + S Y  SA      ++   S +    
Sbjct: 146 TAFGPDFDAAQAVLGEIKKHRDGERPQTKKFMDVASAYVGSAAMHGTRLS---SIKKAIG 202

Query: 101 QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF---LTSMRVLFKWAVRQEYVAINP 157
           +  R        ++T  H             +       +  +  +FK+A ++ +V  NP
Sbjct: 203 EFDRTFPKVTLNELTKVHFYEYATILAEDGMAKNTIKGRIARLSSVFKFAEKKGHVVSNP 262

Query: 158 CLSVER--PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ 215
            + ++     R  E   P+TK+ + +        ++ RL    L+ +G+R  ++     Q
Sbjct: 263 TVGLDYSDLGRDVEHWVPFTKDQLYKIFQQ-PMKARERLLLTILVTTGMRLDEAALLEWQ 321

Query: 216 HLQNN---------IFSIKTQKTGTIITVELPDGFMKLLAMTPIGK-ETFFINNDKQKMN 265
            +++             +K +  G+   V +      +L     G+   + +N   +  +
Sbjct: 322 DVKDKDGIPYFDLTRADLKIKNKGSKRFVPIVTDLQNVLGKEGSGRIFNYRLNALGK-TS 380

Query: 266 ATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
                     +A  A   +  H  R     +  D G          G  + D A  Y
Sbjct: 381 DASIICMEHIRAVTANPLQVNHSFRGTIKDLMRDEGVAKEVNDYITGHGSGDAAGRY 437


>gi|31616157|gb|AAP55251.1| integrase protein [Staphylococcus aureus]
          Length = 378

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/315 (12%), Positives = 100/315 (31%), Gaps = 41/315 (13%)

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128
           TT K +   + +           +     +   I+    +   + IT  + +  +     
Sbjct: 65  TTFKQVYDLWLEQYKHTVRESTYQRVVTLFNTAILEHFNNVSIKSITIPYCQRVINKWND 124

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT----EGIRPWTKEDMQQFKS 184
                         +F++ V  + +  NP    ++P++K     +    ++++++Q F S
Sbjct: 125 KYKDMKAIRIYTSNVFEYDVNLKIITENPFKHTKQPRKKETPQEDSYVYYSRDELQTFLS 184

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT--------------- 229
           F          F  L ++G R  +        +     +I   KT               
Sbjct: 185 FVEGNLVDYAIFRTLAFTGFRRGELMALTWNDINFEKKTITINKTCARGNNYKPIIQPPK 244

Query: 230 --GTIITVELPDGFMKLLAMTPIGKET---------------FFIN-NDKQKMNATQFSI 271
              +  T+ + D  + +L    + + T                F N +  +++     + 
Sbjct: 245 TKSSYRTISVDDKTLSILKQWKVQQRTESLKFGHNALKKDQFVFTNVSTNKRLYPEYCNK 304

Query: 272 WFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRI 329
                  K    +   HG R    ++  +AG T  E+    G   +    + Y    ++ 
Sbjct: 305 VLANVCKKHNFKQIKLHGFRHVHCSLLFEAGLTIQEVQDRLGHGDIKTTMDIYAHVTEKQ 364

Query: 330 RLGIKNSRRISSVVD 344
           R   + + + ++ ++
Sbjct: 365 R--DQVAEKFANYIN 377


>gi|257439570|ref|ZP_05615325.1| transposase [Faecalibacterium prausnitzii A2-165]
 gi|257198017|gb|EEU96301.1| transposase [Faecalibacterium prausnitzii A2-165]
          Length = 417

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/285 (13%), Positives = 80/285 (28%), Gaps = 48/285 (16%)

Query: 85  GSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRSGVESRKHT---PSSAIQFLTSM 140
            ++   ++   +     +   K G      +     +      K       +      S+
Sbjct: 116 ANVRHGTKQGRKQLMRILQEDKLGACRIENVKLSDAKEWALRMKEKGYGFKTINNHKRSL 175

Query: 141 RVLFKWAVRQEYVAINPC--LSVERPKRKTEGIRPWTKEDMQQFKS---FWSEGSQPRLA 195
           +  F  A++ + +  NP         +  TE   P +      F S         +    
Sbjct: 176 KAAFYTAIQDDCIRKNPFDFQLNTVLEDDTEPKEPLSPTQEAAFLSFVQHDKVYQKYYDE 235

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT------------------QKTGTIITVEL 237
              LL +GLR S+ C      +  +   I                     K+G  + + +
Sbjct: 236 IIILLGTGLRISELCGLTEADIDLDKQLINVDHQLLKIADVGYYVETPKTKSGNRV-IPM 294

Query: 238 PDGFMKLLAMTPIGKET------------FFINNDKQKMNATQFSIWFKA------KATK 279
            +  ++        ++              F+N +     A  +   F+       K  K
Sbjct: 295 SEKVLEAFQRVLNKRKYAQPVILEGYTKFLFLNRNGLPKVAVNYESMFRGLVRKYTKTQK 354

Query: 280 AGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
             + K  + H +R    T  A+AG     L    G   ++    Y
Sbjct: 355 VALPKVMTPHTLRHTFCTTLANAGMNPKALQYIMGHSNINMTLNY 399


>gi|256375259|ref|YP_003098919.1| integrase family protein [Actinosynnema mirum DSM 43827]
 gi|255919562|gb|ACU35073.1| integrase family protein [Actinosynnema mirum DSM 43827]
          Length = 384

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 48/352 (13%), Positives = 98/352 (27%), Gaps = 51/352 (14%)

Query: 18  HGKIIYY------------FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
           HG+I  Y            +R   G    +     +                R  +    
Sbjct: 11  HGEIRCYRLPNGRYRAITNYRDYDGVLRPVERVGGTETNAKNNLRAALRDRARAVVGEEV 70

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFE-SYFDQIIRKSGDFDYRKITTKHIRSGVE 124
                +  +   + +       A  ++ ++  S+   +    G+   R+ T       + 
Sbjct: 71  TDRAKVAAVADMWLRELDESGKATRTKRTYRESWTRDLAEPVGELTVREFTVATAERILR 130

Query: 125 SRKHTPS--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP---KRKTEGIRPWTKEDM 179
           + +      SA      +  +   AVR + +  NP   V      K+     +  T+   
Sbjct: 131 AVRDGAGLGSAKHAKVVLTGVLGLAVRYDAIESNPLREVGELGKSKKAKPVAKRLTEITW 190

Query: 180 QQFKSF------WSEGSQPRLA--FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-- 229
            Q+ S          G +  L    + L  +G R  +    G   +     + K +    
Sbjct: 191 AQYVSLRAVLVAADAGERADLVDLVDVLAATGARIGELLALGWARVDTGAGTFKLEGAVI 250

Query: 230 ----------------GTIITVELPDGFMKLLAMTPIGKET--FFINNDKQKMNATQFSI 271
                             + T+E+P   ++++A      ++   F        +      
Sbjct: 251 REKGIGLLVQPHTKSAAGMRTIEVPSWAVEIVAKRQAEADSEWVFPTALGGLRDPDNTRK 310

Query: 272 WFKAKATKAGV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
             +     AG        H  R   AT   +AG TA ++    G   V   +
Sbjct: 311 SLRR--VLAGTEWEGLHPHAFRHLVATRLDEAGLTARQIADYLGHAQVSMTQ 360


>gi|163853685|ref|YP_001641728.1| tyrosine recombinase XerC [Methylobacterium extorquens PA1]
 gi|240141109|ref|YP_002965589.1| ptyrosine recombinase xerC, integrase/recombinase Ripx (xerC)
           [Methylobacterium extorquens AM1]
 gi|163665290|gb|ABY32657.1| tyrosine recombinase XerC [Methylobacterium extorquens PA1]
 gi|240011086|gb|ACS42312.1| ptyrosine recombinase xerC, integrase/recombinase Ripx (xerC)
           [Methylobacterium extorquens AM1]
          Length = 365

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 42/280 (15%), Positives = 83/280 (29%), Gaps = 31/280 (11%)

Query: 82  AHWGSLAVNSRISFESYFDQIIRK----------SGDFDYRKITTKHIRSGVESRKHTPS 131
           A    +A N+  ++E    Q +            +G    +    +   +   +      
Sbjct: 35  ARERRMAANTVEAYERDLRQFLIHRAARSGTPTIAGLIALKPRDLRAFMAARRAEGIGGR 94

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           S ++ L  +R   ++  R+ + ++    +V  PK +    RP          +  +    
Sbjct: 95  SLMRMLAGLRSFARFLEREGHGSVAALGAVRSPKVERRLPRPLPISAALAMTAPETRPDD 154

Query: 192 PRLA---------FEFLLYSGLRCSDSCRAG-VQHLQNNIFSIK-TQKTGTIITVELPDG 240
            R              L  SGLR S++            I  ++ T K G +  V +   
Sbjct: 155 DRAPWVLARDAAVIALLYGSGLRISEALGLTARDAPMPGIDEVRVTGKGGKVRAVPVLPA 214

Query: 241 FMKLLAMTPIGKET-------FFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRK 291
             + +A                F+      ++         A     G+    + H +R 
Sbjct: 215 VAEAVAAYLSLCPHPLDPEGPLFVGVKGGPLSPRVVQYAVSALRGALGLPESATPHALRH 274

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
             AT           +    G  ++   + YTK  D  RL
Sbjct: 275 SFATHLLARRGELRAIQELLGHASLSTTQIYTK-VDAARL 313


>gi|326409495|gb|ADZ66560.1| phage integrase [Brucella melitensis M28]
          Length = 92

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 39/90 (43%), Gaps = 2/90 (2%)

Query: 258 NNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKT 315
               +  +    +         A + K  + HG+RK    I A+ GA+  ++M T+G   
Sbjct: 2   TAYGEPFSPKSLTGRMADWTASAKLPKGFTLHGLRKTLGKILAEGGASTRQIMDTFGHDD 61

Query: 316 VDQAETYTKGADRIRLGIKNSRRISSVVDS 345
           +  AE YT+ A++ RL      R+  +  +
Sbjct: 62  IAHAELYTREAEQARLATDGMSRVVRLKRN 91


>gi|319786730|ref|YP_004146205.1| integrase [Pseudoxanthomonas suwonensis 11-1]
 gi|317465242|gb|ADV26974.1| integrase family protein [Pseudoxanthomonas suwonensis 11-1]
          Length = 366

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/299 (13%), Positives = 92/299 (30%), Gaps = 33/299 (11%)

Query: 55  TPKREYINSPRKKPTTLKWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRK 113
           TP  + +        T+   ++ +R            +   +  +  +I    G  +   
Sbjct: 57  TPSDDLVARVVGTGRTVADALAVFRADDLPHRGWGAKTAAWYGVFLKRIEADIGGRELEG 116

Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
           +T K     +     +      +   +  +   AV++ ++  NP     +     +  R 
Sbjct: 117 LTVKDCAEYIRGVTESARGRQTYRLVLGWILACAVQEGWIDSNPAELTRKFSHTRQRARL 176

Query: 174 WTKEDMQQFKSFWSEGSQ-PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK---- 228
                +  +++  ++     R A +  L + LR  D        + ++   +  QK    
Sbjct: 177 ----TLDTYRAIHAQAPGWLRNAMDLSLLTLLRREDVATLRFADVHDDALWVVPQKTEGS 232

Query: 229 TGTIITVELPDGFMKLLA------------------MTPIGKETFFINNDKQKMNATQFS 270
           T   + +++      L+A                    P GK      +  Q M   Q +
Sbjct: 233 TAVRLRIKMGADLAALVARCRDAVVSPYLVHRLPEKAKPRGKGAAGRVHHTQVM-PEQIT 291

Query: 271 IWFKAKATKAGVNK----SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
             F      AG+      + H +R     +  + G +  ++ A  G  +      Y +G
Sbjct: 292 RAFAEARDAAGIGGESPPTFHEIRSLGGALLREQGWSLQQVQALMGHASEAMTSVYLEG 350


>gi|317506246|ref|ZP_07964065.1| phage integrase [Segniliparus rugosus ATCC BAA-974]
 gi|316255492|gb|EFV14743.1| phage integrase [Segniliparus rugosus ATCC BAA-974]
          Length = 444

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 49/355 (13%), Positives = 97/355 (27%), Gaps = 73/355 (20%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87
           G  R+ R             ++       +  +++        L+  I    +S     L
Sbjct: 26  GKRRQERKRGFRIKDEAEDALTERLAEIRQGVHVDRSMTTAQYLRDWIDAKEESG----L 81

Query: 88  AVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSG----------------------VE 124
              + +S+  + +  ++   G    R +   H+                           
Sbjct: 82  RAKTVLSYRQHIEAHLVPHLGHIKLRDLRATHVEKMLREVAKPPKAPEPGEKIAKGKRRN 141

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
            ++ +PSS  +   ++      A R+  ++ N  +  +RP      +RPW   D+  F  
Sbjct: 142 PKQLSPSSVRRVYATLSSALGAAKRKRLISFNAAVDADRPAANRPKVRPWEPRDLGAFLD 201

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI----------------------- 221
             + G +    FE    +GLR  + C      +                           
Sbjct: 202 -HAAGERFGPMFEVSALTGLRRGELCALRWDCVDLERNQIVVREQLVAIPSAGIICPYCS 260

Query: 222 -----FSIKTQKT--GTIITVELPDGFMKLLAMTP--------------IGKETFFINND 260
                F   T KT  G    V+L    + +L                  +     F   D
Sbjct: 261 AEHKQFRFSTPKTDSGESRVVDLDAATVGVLMAQKLAQDSEREEWGDLYVDHGLVFARED 320

Query: 261 KQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWK 314
              +     +  F       G+ +   H +R   A++   AG     +    G  
Sbjct: 321 GNPIPPDDVTEKFNKLTDDLGLRRVRLHDLRHGQASLMLAAGVDMAVVSKRLGHS 375


>gi|295133121|ref|YP_003583797.1| transposase [Zunongwangia profunda SM-A87]
 gi|294981136|gb|ADF51601.1| putative transposase [Zunongwangia profunda SM-A87]
          Length = 426

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 42/285 (14%), Positives = 93/285 (32%), Gaps = 34/285 (11%)

Query: 75  ISEYRKSAHWGSLAVNSRISF---ESYFDQIIRK---SGDFDYRKITTKHIRSGVESR-- 126
           + +Y +      LA  +  ++   E Y  + ++K   S D    +I    I         
Sbjct: 114 LMDYHRENELHKLAPGTAKNYNATEKYVSRFLKKEFKSNDIPLAQINYTFIVKFENYLRT 173

Query: 127 -----KHTPSSAIQFLTSMRVLFKW---AVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
                K  P +    +  +  L K+   A++  ++  NP  ++ + K +        +++
Sbjct: 174 CPPLSKSRPLNHNGMMKHLERLQKFTTLALKHGWLKSNP-FALYQLKYEEFDCPFLERDE 232

Query: 179 MQQ---FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-----QNNIFSIKTQKTG 230
           +      +         R  F F  Y+GL   +        +           ++ QKT 
Sbjct: 233 LDSIMLLRISQESIRLVRDVFVFSCYTGLSYIEVKNLKQCDIVNGIDDEQWIMVRRQKTK 292

Query: 231 TIITVELPDGFMKLL---AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--S 285
           T + + + D    +L   A  P  +  + +    +  +  + +   K  A    + K  +
Sbjct: 293 TPVKLPVLDEAKAILEKYADYPSEENNYSLL---RMFSDQKINKHLKKIAELCNIKKNLT 349

Query: 286 AHGVRKFSATISAD-AGATAHELMATYGWKTVDQAETYTKGADRI 329
            H  R   AT  A         +    G   +   + Y +  ++ 
Sbjct: 350 FHVARHTFATTIALLNDVPIETVSKMLGHTKLSTTQKYARVIEKK 394


>gi|261821183|ref|YP_003259289.1| integrase [Pectobacterium wasabiae WPP163]
 gi|261605196|gb|ACX87682.1| integrase family protein [Pectobacterium wasabiae WPP163]
          Length = 416

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 41/274 (14%), Positives = 97/274 (35%), Gaps = 20/274 (7%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH 128
           T   + +++ +      LA N+        +  +    G     ++T +H  + +E  + 
Sbjct: 106 TFAKVSADWYELKKSQPLAENTIKDIWRSLEKYVFPFIGTLPITQLTARHFITALEPIQA 165

Query: 129 TPS--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP---KRKTEGIRPWTKED--MQQ 181
           +    +  +    +  +  +AV    +  NP   + +      KT       +    + +
Sbjct: 166 SGKLETVKRVSQRINEVMDYAVNSGLIPANPAAKIRKAFQTPVKTHMPTIRPEALPGLMK 225

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIIT--VEL 237
             S  S   Q RL  E+ L +  R +++       +   +N ++I   +        + L
Sbjct: 226 TLSVASIELQTRLLIEWQLLTVTRPAEAAETRWSEINLTDNTWTIPAGRMKMRRDHIIPL 285

Query: 238 PDGFMKLLAMTPI---GKETFFINN--DKQKMNATQFSIWFKAKATKAGVNKSAHGVRKF 292
           P   + +L         +E  F ++   KQ MN+   +   +    K  +   +HG+R  
Sbjct: 286 PPQALAILDAMKPISGHREYLFPSSKDPKQPMNSQTANAALRRMGYKGVL--VSHGLRAI 343

Query: 293 SATISADAGATAHELMATYGWKTVDQAET-YTKG 325
            +T + + G +   + A       ++    Y + 
Sbjct: 344 FSTAANEEGFSPDVIEAALAHVDTNEVRRAYNRS 377


>gi|226329968|ref|ZP_03805486.1| hypothetical protein PROPEN_03881 [Proteus penneri ATCC 35198]
 gi|225200763|gb|EEG83117.1| hypothetical protein PROPEN_03881 [Proteus penneri ATCC 35198]
          Length = 168

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/153 (18%), Positives = 49/153 (32%), Gaps = 9/153 (5%)

Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233
            T  ++QQ  +   EG   ++A    L +G R  ++ +   +H+  N       KT    
Sbjct: 4   LTDNEIQQLLALL-EGDNLKVAV-LCLSTGARWGEALKLKREHVIQNKVRFTYTKTNKPR 61

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFS 293
            V +      ++     G            M    F    K       + ++ H +R   
Sbjct: 62  IVPISQAVADMICTKKSG---LLFTETSYHM----FRRAIKKVKPSMALGQATHALRHTF 114

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           AT     G +   L    G   + Q  TY   A
Sbjct: 115 ATHFMMNGGSIITLQRILGHTNLQQTLTYAHFA 147


>gi|160885083|ref|ZP_02066086.1| hypothetical protein BACOVA_03081 [Bacteroides ovatus ATCC 8483]
 gi|293371572|ref|ZP_06617989.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|156109433|gb|EDO11178.1| hypothetical protein BACOVA_03081 [Bacteroides ovatus ATCC 8483]
 gi|292633455|gb|EFF52021.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
          Length = 390

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 53/272 (19%), Positives = 100/272 (36%), Gaps = 30/272 (11%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVESRKHTPSSAI 134
           +++     SL  ++R +  S  + +     +  +  +T        + ++S+ +  ++  
Sbjct: 112 FKEEIANSSLKESTRQNHLSTLELLQEFKKEVLFTDLTFEFVSSFDNYLQSKGYHLNTIA 171

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP-WTKEDMQQFKSFWSEGSQPR 193
           + +  ++     A+ +EY+ I      +   +  EG       E++ +F++    G   R
Sbjct: 172 KHMKHLKRYINVAINKEYMDIQKYAFRKYKIKSIEGSHTHLAPEELHKFENLQLTGRYTR 231

Query: 194 L-----AFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDGFMKL 244
           L     AF F  Y+GLR SD       ++    Q      K+ KTG  + + L       
Sbjct: 232 LQKTKDAFLFCCYAGLRYSDFTNLTSANIVEFHQETWIIYKSVKTGMEVRLPL------- 284

Query: 245 LAMTPIGKETFFINNDKQKMNA----TQFSIWFKAKATKAGVNK-----SAHGVRKFSAT 295
             +   GK    +   K   N+       S   K     AG+ K     S H  R  +AT
Sbjct: 285 -YLLFEGKGIQILQRYKDDFNSFFKLKDNSNINKELNILAGLAKIDKRVSFHTARHTNAT 343

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           +    GA    +    G K+V   + Y    D
Sbjct: 344 LLLYNGANITTVQKLLGHKSVKTTQVYANIMD 375


>gi|83717795|ref|YP_439208.1| integrase-like protein [Burkholderia thailandensis E264]
 gi|237508694|ref|ZP_04521409.1| bacteriophage lambda integrase, N- domain family [Burkholderia
           pseudomallei MSHR346]
 gi|83651620|gb|ABC35684.1| integrase-like protein [Burkholderia thailandensis E264]
 gi|235000899|gb|EEP50323.1| bacteriophage lambda integrase, N- domain family [Burkholderia
           pseudomallei MSHR346]
          Length = 375

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 50/292 (17%), Positives = 89/292 (30%), Gaps = 35/292 (11%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRSGVESRKH 128
           TL     +Y +       A N+  S +S    I           +++TK I   +E    
Sbjct: 75  TLDQWCDKYLQKFEASGKAGNTIKSVQSQIRAIKAAPFSTQSLMRVSTKEINDYIEGITE 134

Query: 129 TPSSAI--QFLTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
           +  + I  +  + ++ +F+ A    ++    NP + V+ P       R  T +D     +
Sbjct: 135 SRGATITAKIRSRLQDVFRSAEAAGHIELGKNPAIPVKAPPVDVSRDR-LTLDDFNAIVA 193

Query: 185 FWSEGSQ---PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP--- 238
              E S       AFE  L +G R SD        +++    ++  K+   + +++P   
Sbjct: 194 RTREDSTRCWAANAFELALLTGQRLSDIAAMTFDQVKDGFLWVEPIKSQGKVKLKIPVHV 253

Query: 239 ----------DGFMKLLAMTPIGKETFFINND-----KQKMNATQFSIWFKAKATKAGVN 283
                         +            FI+        QK+     S  F      AG+ 
Sbjct: 254 GLSSVKLTIEAVIKRCRDSVVSKHMVHFIHQRGSVKPGQKVYHDTISKTFAEMRDVAGIT 313

Query: 284 K-------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
                   S H +R   A              A  G  +      Y     R
Sbjct: 314 GREGRNPPSFHEIR-SLAIRLYSDEYGPAFAQALVGHTSAQMTALYRDNRGR 364


>gi|332142371|ref|YP_004428109.1| phage integrase [Alteromonas macleodii str. 'Deep ecotype']
 gi|327552393|gb|AEA99111.1| phage integrase [Alteromonas macleodii str. 'Deep ecotype']
          Length = 275

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 43/249 (17%), Positives = 89/249 (35%), Gaps = 30/249 (12%)

Query: 102 IIRKSGDFDYRKITTKHIRSGVESRKHTP--SSAIQFLTSMRVLFKWAVRQEYVAINPCL 159
           + +  G+    +  ++  R   +    +   S+       +R  F  AV    +  NP L
Sbjct: 2   LKKYVGNTPITQFDSRSARELAQELAISMGNSTLNSTFKVLRAAFSEAVVDGTITNNPLL 61

Query: 160 S------VERPKRK-TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRA 212
                  V+R K K  + ++P+T  ++++  +F     + R   +    +GLR  + C  
Sbjct: 62  GFKISSAVKRRKSKQKDKVQPFTLTELKKLAAFQDL--RERTYIQVWAKTGLRSGELCAL 119

Query: 213 GVQHLQNNIFSI--------------KTQKTGTIITVELPDGFMKLLAMTPIGKETFFIN 258
             +H+     +I                +   +  T++L +  + LL +   GK  F  +
Sbjct: 120 RWEHVDLERKTINIDENYVTYAKELGTPKTEASERTIQLDEETVSLLQILEPGKLPFVFH 179

Query: 259 NDKQK---MNATQFSIWFKAKATKAGVNKS-AHGVRKFSATISADAGATAHELMATYGWK 314
           N + K    +             + GV+    + +R   AT+    G    ++    G  
Sbjct: 180 NSRSKREHFDTYSLRRLLIKMCDECGVSYRHPYNLRHTYATMRISLGHNLWDIAKQMGHT 239

Query: 315 TVDQA-ETY 322
           +     ETY
Sbjct: 240 SPKMLFETY 248


>gi|193064762|ref|ZP_03045840.1| putative integrase [Escherichia coli E22]
 gi|192927645|gb|EDV82261.1| putative integrase [Escherichia coli E22]
          Length = 531

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 50/304 (16%), Positives = 98/304 (32%), Gaps = 47/304 (15%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVESRK 127
           +   L+S         +L  +S     S  + + R   SG     +     +R  + S +
Sbjct: 228 SFSELVSSLLAE-KVQTLKASSYKDLSSSLNTVSRFLTSGMDLMSRSEWLAVRDAMLSAE 286

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVA-INPCLSVERPKRKTEGIRPWTKEDMQQFK--- 183
             PS+  + LT  ++   + +    +   NP   ++  K      R +T E++++     
Sbjct: 287 VRPSTINKLLTKAKMCLDYGLMNGQLKGRNPIERMKLTKDVDSKRRAFTDEELERLLVRV 346

Query: 184 ------SFWSEGSQ--PRLAFEFL-LYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTG 230
                 +  +  +    R     + + +G R ++ C    + +          I     G
Sbjct: 347 EAEYQFTRHTAHTTSEARRWATLVSVVTGARSAEVCHLTKRDIVTIDTMVCIDINEDGDG 406

Query: 231 TII-------TVELPDG--------FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKA 275
             +        V L DG        F+  +   P     F        M  + +S WF +
Sbjct: 407 KSVKNKHSVRLVPLTDGAYGFDLTSFLSWVDAQPDDGPLF-------GMTPSAYSSWFNS 459

Query: 276 KATKAGV----NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIR 330
           +     +    N S H +R + AT   + G    +     G  +     + Y KG    R
Sbjct: 460 RVLTEALPDADNVSLHSLRHWLATRMKERGVNLVDAQGILGHSSQSITYDLYGKGHAVGR 519

Query: 331 LGIK 334
           L   
Sbjct: 520 LADA 523


>gi|19549014|ref|NP_599058.1| integrase [Enterobacteria phage SfV]
 gi|2465477|gb|AAB72135.1| integrase [Enterobacteria phage SfV]
          Length = 387

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 84/220 (38%), Gaps = 24/220 (10%)

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +  + ++    L+ ++ L + A  +E+  ++    ++ P+ K + IR     + Q+    
Sbjct: 139 KPASVATKATHLSFIKALLR-AAEREWKMLDKAPIIKVPQPKNKRIRWLEPHEAQRLIDE 197

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGF 241
             E  +     EF L +GLR S+      Q +         + +  K+   I V L D  
Sbjct: 198 CPEPLKS--VVEFALATGLRRSNIINLEWQQIDMQRRVAWINPEESKSNRAIGVALNDTA 255

Query: 242 MKLLAMTPIGKETFFINNDK--------------QKMNATQFSIWFKAKATKAGVNK-SA 286
            ++L    IG    ++   K              ++M     + W KA   +AG++    
Sbjct: 256 CRVLKKQ-IGNHHRWVFVYKESCTKPDGTKAPTVREMRYDANTAW-KAALRRAGIDDFRF 313

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           H +R   A+    AG     L    GW++++    Y   A
Sbjct: 314 HDLRHTWASWLGQAGVPLSVLQEMGGWESIEMVRRYAHLA 353


>gi|10956538|ref|NP_043131.1| integrase/recombinase [Lactobacillus delbrueckii]
 gi|971481|emb|CAA90742.1| integrase/recombinase [Lactobacillus delbrueckii]
          Length = 333

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 45/290 (15%), Positives = 103/290 (35%), Gaps = 36/290 (12%)

Query: 86  SLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRV 142
           + + ++  ++        Q +  +G     + T K     +E++   PS+   ++  ++ 
Sbjct: 46  NKSQSTIKTYTRCLKSFAQWLAMNGIQQTSESTIKLYMQWLENQGRQPSTIHLYIVVVKR 105

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED-----MQQFKSFWSEGSQPRLAFE 197
            FKW +  + +  +   +VE  + + +  + + +       +        +G +      
Sbjct: 106 WFKW-LEAKRIYPDVAKNVENVRVRKDSPKSFFQAHQVKKILDTVDQTSEKGKRNYALLV 164

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNI------FSIKTQKTGTIITVELPD-------GFMKL 244
            L   GLR  ++ RA V +++ N          K  KT     V LPD        ++  
Sbjct: 165 LLFTCGLRTIEASRARVDNIRLNGSQLVLYIHGKGHKTDDD-YVPLPDKTYAVLCEYLST 223

Query: 245 LAMTPIG----KETFFINNDKQKMNATQFSIWFKAKAT----KAGVN---KSAHGVRKFS 293
             + P      K+  F +   +  + +  +            KAG +    +AH  R  +
Sbjct: 224 RGIKPKDFETCKQPLFTSTSNRSKDQSISTNAISKICKSCFRKAGYDQHDWTAHSTRHTA 283

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343
           AT++   GA   E        +    E Y       +L  +  + +++ +
Sbjct: 284 ATLALTNGADLRETQMLLRHSSPTTTEIYLHQL--GKLENQAGKDVANAI 331


>gi|325855557|ref|ZP_08171868.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
 gi|325483771|gb|EGC86731.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
          Length = 404

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 43/256 (16%), Positives = 86/256 (33%), Gaps = 28/256 (10%)

Query: 89  VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES-------RKHTPSSAIQFLTSMR 141
            ++R   ++ F +   K  D  + ++T + I    +        ++ T  +A   L ++ 
Sbjct: 133 HSTRTHLQN-FIKSRYKVSDLAFSQLTEQFIYDFQQYFMGICGFQESTFYNAATHLKTV- 190

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ-----QFKSFWSEGSQPRLAF 196
              + A R+    I     V+  K   +  +   +  +      QF     E    R  F
Sbjct: 191 --CRLAYREGLADILLFDKVKVSKGDKKLPKALDRCSLDKLMNIQFGELEEEMETARDLF 248

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251
            F  ++G    D       HL  +           QKTG +  ++L    ++++      
Sbjct: 249 VFACHTGAAYCDLMELSRLHLVRDDEGSLWLKFNRQKTGVLCRIKLLPEAIRIIEKYKSD 308

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS-ADAGATAHELM 308
           +    +     +M    +  + KA   +A +    + H  R   AT+   + G     + 
Sbjct: 309 ERESLL----PQMKYATYQSYLKALRLRASIAFPFTTHTARHTFATLITLEQGVPIETVS 364

Query: 309 ATYGWKTVDQAETYTK 324
              G   V   E Y K
Sbjct: 365 KMLGHSNVSMTERYAK 380


>gi|281354995|ref|ZP_06241489.1| integrase family protein [Victivallis vadensis ATCC BAA-548]
 gi|281317875|gb|EFB01895.1| integrase family protein [Victivallis vadensis ATCC BAA-548]
          Length = 457

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 56/354 (15%), Positives = 114/354 (32%), Gaps = 55/354 (15%)

Query: 42  TFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ 101
            FI   +  +      R+ I   R K   L  L   Y ++ +       +    E Y  +
Sbjct: 65  EFIENRLEYMAQVAGSRKIIQRSRIK---LSELWETYLRNPNRPDSGRLTLKRNELYCRK 121

Query: 102 IIRKSGDFDYRKI------TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI 155
            +    +     I      T     + + S   +P +   +L +++++FK  ++      
Sbjct: 122 FLSFLEEKKIDSIDDITFDTAATFMTNLWSTGISPKTYNYYLQTLKLVFKTLLQ----DD 177

Query: 156 NPCLSVERPKRKTEGIRPWTKEDMQQF------KSFWSEG-SQPRLAFEFLLYSGLRCSD 208
           +P  +++     TE  +P+T E +         +++      Q R+ F   L  GLR  D
Sbjct: 178 SPFRNIKAKTATTESRKPFTPEQVSAIFKTLDDENYHILHKPQMRILFLLGLCFGLRMHD 237

Query: 209 SCRAGVQHL-QNNIFSIKTQKT----GTIITVELPDGFMKLLAMTPI--GKETFFIN-ND 260
           +      ++  +     K +KT       I + +P    +   +       E    +  +
Sbjct: 238 AACFRWDYIQGDGTVKFKARKTIKTMKQYIVLPIPSILEEQFKIAETWKRNEYILPDVAE 297

Query: 261 KQKMNATQFSIWFKAKATKAGV---------------------------NKSAHGVRKFS 293
           +   N++  S         AG+                             S H  R   
Sbjct: 298 RYGYNSSGISTDVDKLLRSAGIQTKEQPVETRRMFYINSQGETKQRRIGRYSFHSFRHTF 357

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
            TI+A +G     + +  G   V   E YT      +  +  S  ++ + +S  
Sbjct: 358 CTIAASSGKDLSLIRSIVGHSNVAMTEHYTHYTLEAKKSVIESIPLAVMTNSPR 411


>gi|126667680|ref|ZP_01738648.1| hypothetical protein MELB17_10268 [Marinobacter sp. ELB17]
 gi|126627783|gb|EAZ98412.1| hypothetical protein MELB17_10268 [Marinobacter sp. ELB17]
          Length = 303

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/273 (14%), Positives = 88/273 (32%), Gaps = 24/273 (8%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
            + L   Y         +  +   +     Q+         +  T +  +  +   +H  
Sbjct: 9   FQALHQRYLTELTLRGKSPKTIDLYTRCLRQVCDYFETCPDQLSTDQLQQYFMHLVEHRS 68

Query: 131 SSAIQF-LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            S ++    +++  +++ + + +    P   V+ PK +T      + +++++  S   + 
Sbjct: 69  WSLVKIARNALQSFYQYVLGKPW-EYVPI--VKAPKVQT-LQDVLSLKEVERLISRTRKL 124

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN--IFSIKTQKTGTIITVELPDGFMKLLA- 246
           S   + F      GLR S+S    +  + ++     ++  K      V LP   +K L  
Sbjct: 125 SYQ-VYFLTTYSLGLRLSESLNLTIADVDSHLMRVHVRCGKGKKDRFVPLPLMTLKALRR 183

Query: 247 --MTPIGKETFF---------INNDKQK--MNATQFSIWFKAKATKAGVNKS--AHGVRK 291
              T    +  F         +    +   M         K  A   G+ K    H +  
Sbjct: 184 YWATHRHPDLLFPGWHPPYASVATSGKPRVMARGGVQKAIKQVALDCGIRKHVHIHSMGH 243

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK 324
             AT   + G     + +  G  +      YT+
Sbjct: 244 SFATHMLENGVNLRSIQSLLGHASPVTTARYTR 276


>gi|224283257|ref|ZP_03646579.1| phage family integrase [Bifidobacterium bifidum NCIMB 41171]
 gi|313140403|ref|ZP_07802596.1| phage family integrase [Bifidobacterium bifidum NCIMB 41171]
 gi|313132913|gb|EFR50530.1| phage family integrase [Bifidobacterium bifidum NCIMB 41171]
          Length = 309

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/274 (14%), Positives = 88/274 (32%), Gaps = 34/274 (12%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HTP 130
             IS Y++    G++   +   +      + R   D     +   + +  +      H  
Sbjct: 18  QWISVYKE----GAIREVTMKKYRLTQAWLGRLIPDLKLADMDRVNYQKLINGYAEHHER 73

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLS--VERPKRKTEGIRPWTKEDMQQFKSFWSE 188
            + + F   ++     AV +  +  +P     ++     ++  +   + ++    +    
Sbjct: 74  QTTMDFHHQLKGAILDAVDEGLIQRDPTRKAIIKGKPPCSKKTKYLNQFELHAVLADLEL 133

Query: 189 GSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSIKTQKT----------------- 229
           G  P   +  LL   +GLR S++             ++   KT                 
Sbjct: 134 GKGPSWDWLILLVAKTGLRFSEALGLTPDDFDFVHQTLSVSKTWDYKNGGGFVPTKNASS 193

Query: 230 --GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SA 286
                +  +L      LL   P G   F    + +  N+T  +        +A V   S 
Sbjct: 194 VRKVQLDWQLIMQLSTLLKDMPAGDPIFV---NGKVYNSTA-NNILARHCERANVPVISI 249

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
           HG+R   A++   AG +   +    G  +++  +
Sbjct: 250 HGLRHTHASLLLFAGVSIASVSKRLGHASMNTTQ 283


>gi|191168581|ref|ZP_03030365.1| phage integrase family protein [Escherichia coli B7A]
 gi|190901375|gb|EDV61140.1| phage integrase family protein [Escherichia coli B7A]
          Length = 372

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 60/355 (16%), Positives = 112/355 (31%), Gaps = 42/355 (11%)

Query: 17  RHGKIIYYFRKG-HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT----- 70
           R G++ Y ++    G+   L          A  +    +  + EY      +  +     
Sbjct: 22  RTGRVYYQYKNPVTGKFHGLGTDKGKAEKIASTANQRIAAAEAEYFMRKIDESPSATKRR 81

Query: 71  ---LKWLISEYRKSAHWG----SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
              LK  +  Y K          +A  +          ++ + G+   +++  +     +
Sbjct: 82  GIRLKAWVDRYLKIQDTRLKNGDIATTTHKEKARMAAYLVSRLGNHPLKELEVRDFALIL 141

Query: 124 ESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAI--NPCLSVERPKRKTEGIRPWTKEDM 179
           +    K   S+A         ++K A     V    NP  +  +P  K    R  T ED 
Sbjct: 142 DEWLDKDMVSTARVNRGLWVDIYKEAQHAGEVPPGWNPPEATRKPIPKVTRAR-LTLEDW 200

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239
           Q+  +   E    R A    + +G R  D C      + N    I   KTG  + + L  
Sbjct: 201 QKIYNATPEKHFIRNAMLLAIVTGQRRDDICHMRFSDVWNEHLHITQGKTGMRLALPLTL 260

Query: 240 G-------FMKLLA-MTPIGKETFFINNDK----QKMNATQFSIWFKAKATKAGV----- 282
                     +++          + I++      + M+    S +F      AG+     
Sbjct: 261 RCDAIGITLKEVIDGCRDRILSPYLIHSRHQKQPKPMSKDNLSDYFAKARDLAGIIPPAG 320

Query: 283 --NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY--TKGADRIRLGI 333
               + H  R  S  +    G     L    G K     + Y  T+G + ++L I
Sbjct: 321 KTPPTFHEQRSLSERLYRAQGVDTKTL---LGHKVQATTDRYNDTRGQEWVKLVI 372


>gi|295101383|emb|CBK98928.1| Site-specific recombinase XerD [Faecalibacterium prausnitzii L2-6]
          Length = 403

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 52/385 (13%), Positives = 102/385 (26%), Gaps = 73/385 (18%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKGH--GRRIRLPYPHESTFIPAYMSALTGSTPKREYI 61
             ++P +     T  G   Y  R     G+ + L            + A         + 
Sbjct: 5   KTQIPKY--GTITLKGIQYYRTRITDADGKELSLYAATCEELYEKQLEARKQVEEIIFHR 62

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIR 120
             P       KWL+ +   SA    ++ ++   +     + II+  G+    ++T   IR
Sbjct: 63  QHPTVAEYGEKWLLMQ---SAK---VSASTLRGYTRDMTNYIIKPLGEMYMEEVTADDIR 116

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGI-RPWTKED 178
             +             +  +     +A  + + +  NPC  +     K        T + 
Sbjct: 117 LALVPLSKKSEGLYNKVNMLLKCIFYAAERNQILEHNPCAGISGKGGKPTKKKEALTDQQ 176

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQ------- 227
           +         G  P L     LYSGLR  +        +         S++         
Sbjct: 177 VAVLLDTVK-GLPPYLFIMLGLYSGLRREEILALQWDCVFLDEDTPYLSVRRAWRTEHNR 235

Query: 228 -------KTG-TIITVELPDGFMKLLAMTPIG--KETFFINNDKQKMNATQFSIWFK--- 274
                  KT      + +P   +  L  T      +    ++  + + A+QF   ++   
Sbjct: 236 PVVSTVLKTPAAKRDIPIPKCLVDCLRETKENSISDYVIADSKGEPLAASQFQRVWQYVV 295

Query: 275 ----------AKATKAGVNK------------------------SAHGVRKFSATISADA 300
                            +                          + H +R    T    A
Sbjct: 296 VRSTKPRNYYKYVNGESIKYTVTPMLGMTQKNQPQIKYTLDFGVTPHQLRHTYITNLLYA 355

Query: 301 GATAHELMATYGWKTVDQA-ETYTK 324
           G     +    G +      + Y K
Sbjct: 356 GVDPKTVQYLAGHENSKTTMDIYAK 380


>gi|15595925|ref|NP_249419.1| bacteriophage integrase [Pseudomonas aeruginosa PAO1]
 gi|9946613|gb|AAG04117.1|AE004508_2 probable bacteriophage integrase [Pseudomonas aeruginosa PAO1]
          Length = 327

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 43/314 (13%), Positives = 94/314 (29%), Gaps = 24/314 (7%)

Query: 22  IYYFR----KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISE 77
            ++      KG   R R     E+    A  +A         +   P+ +   L  L+  
Sbjct: 10  RWFVDVEPIKGKRFRKRFKTKMEAQQFEA--TARQKCAENPCWTLRPKDRRR-LSELVEL 66

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAI 134
           + +  H  +L+   R    +    + +  GD     +    +      +     +  +A 
Sbjct: 67  WYE-LHGQTLSNGHRCV--AILRLVAKDLGDPVAVSLEPAKVARLRSRQIANGMSGKTAN 123

Query: 135 QFLTSMRVLFKWAVRQEYVA-INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS--- 190
             L  ++ ++    +   +   NP   +   K +   +   TK  + +  +     +   
Sbjct: 124 NRLGYLKSMYNELRQLGVIDYENPVGRMRPLKLQERPLSYLTKHQVSELLTALDARTTSP 183

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250
            P++     L +G R  ++     + L+ N       K+  + +V + +     L     
Sbjct: 184 HPKMVARICLATGARWGEAQALTPERLKGNTVIFANTKSKRVRSVPISEELGADLRR-HW 242

Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMAT 310
                F N           S   K    +A     +H +R   A+     G     L   
Sbjct: 243 QTHGPFTNCLG-VFRLVLLSTSIKLPKGQA-----SHVLRHTFASHFIMNGGHIVTLQHI 296

Query: 311 YGWKTVDQAETYTK 324
            G  ++     Y  
Sbjct: 297 LGHASLSMTMRYAH 310


>gi|218690338|ref|YP_002398550.1| integrase from prophage [Escherichia coli ED1a]
 gi|218427902|emb|CAR08672.1| integrase from prophage [Escherichia coli ED1a]
          Length = 419

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 52/333 (15%), Positives = 112/333 (33%), Gaps = 33/333 (9%)

Query: 24  YFRKGHGRRIRLPYPHESTFI--------PAYMSALTGSTPKREYINSPRKKPT-----T 70
           Y+R    +RI L +                 Y + ++  T  +++    R+        T
Sbjct: 53  YYRPSDKKRILLSFGSLEDVSLADARKRRSEYRTLISAGTDPQDHERQKRETEARRQGNT 112

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHT 129
            + + + + +     +LA N+        D  +    G+     +T +     +   K  
Sbjct: 113 FENVAAAWYQVKISQNLAPNTIKDIWRSLDKYVFPFIGNTPIDTLTARRFVEVLTPIKER 172

Query: 130 PS--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVER-----PKRKTEGIRPWTKEDMQQF 182
            +  +  + L  +  +  +A     +  NP ++V +      K+    IRP    ++ Q 
Sbjct: 173 GNLETLKRVLQRVNEVMDYAANSGLIDANPAMNVRKAFPSPVKKHMPTIRPEQLPELMQA 232

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIITVELP 238
            S  +   Q RL  E+ L +  R +++       +  +           K      + L 
Sbjct: 233 LSVSATERQTRLLIEWQLLTVTRPAEASSTRWDEINLDAKQWTIPAGRMKMRRDHVIPLS 292

Query: 239 DGFMKLLAMTPI---GKETFF--INNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFS 293
              M +L         +   F  + + +Q MN+   +   +     AGV  S HG+R   
Sbjct: 293 GQAMAVLEAMKPISHHRNYVFPSLKDPQQPMNSQTANAALRRMGF-AGVLVS-HGLRAIF 350

Query: 294 ATISADAGATAHELMATYGWKTVDQAET-YTKG 325
           +T + + G     + A       ++    Y + 
Sbjct: 351 STAANEEGFEPDVIEAALAHVDTNEVRRAYNRS 383


>gi|254228596|ref|ZP_04922021.1| site-specific recombinase, phage integrase family protein [Vibrio
           sp. Ex25]
 gi|262392603|ref|YP_003284457.1| integrase [Vibrio sp. Ex25]
 gi|151938978|gb|EDN57811.1| site-specific recombinase, phage integrase family protein [Vibrio
           sp. Ex25]
 gi|262336197|gb|ACY49992.1| integrase [Vibrio sp. Ex25]
          Length = 405

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 51/307 (16%), Positives = 98/307 (31%), Gaps = 35/307 (11%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD 110
             G  P  +   + ++K  T+  L S++  S        N       +   I    G   
Sbjct: 79  REGFDPLIQRKRAEQEKIKTVNDLFSDWYPSLEKRLKHPNIPK--RVFLKDIAPHIGAIP 136

Query: 111 YRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV---ERPK 165
             ++  + IR+ + +      P+ A   L   + LF   ++ + +  NP  +    +   
Sbjct: 137 LEQVNARDIRTTINAITAAGKPAIANDALNYCKQLFNHGMKLDLMQGNPASAFTVRDAGG 196

Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQ-----PRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220
            +    R  T E+++QF +   +          LA   L+  G+R S+ C A  +     
Sbjct: 197 VEKSRDRALTTEELKQFFNTAKQNPMSFTRDNYLACALLVCLGVRKSELCEARWEEFDLE 256

Query: 221 IFSIK----TQKTGTIITVELPDGFMKLLAMTPIGK---ETFFINNDKQK---MNATQFS 270
               +      KT   +T+ L    ++ L    +     +  F +    K   M     +
Sbjct: 257 KAVWELPKERSKTNVALTIPLATPVLEWLEELKVRSLVSDYVFPSRRSSKNPHMGTDTLN 316

Query: 271 IWF-KAKATKAGVNK------------SAHGVRKFSATISADAGATAHELMATYGWKTVD 317
               K    + G  K            + H +R+   T+ A  G   H        K   
Sbjct: 317 RAITKLFGHEPGKKKQPPNLMGDMPRFTVHDLRRTCRTLLAQQGTPGHVAERCLNHKLKG 376

Query: 318 QAETYTK 324
               Y +
Sbjct: 377 VEGIYDR 383


>gi|299147785|ref|ZP_07040848.1| integrase protein [Bacteroides sp. 3_1_23]
 gi|298513968|gb|EFI37854.1| integrase protein [Bacteroides sp. 3_1_23]
          Length = 390

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 52/272 (19%), Positives = 98/272 (36%), Gaps = 30/272 (11%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVESRKHTPSSAI 134
           +++     SL  ++R +  S  + +     +  +  +T        + ++S+ +  ++  
Sbjct: 112 FKEEIANSSLKESTRQNHLSTLELLQEFKKEVLFTDLTFEFVSSFDNYLQSKGYHLNTIA 171

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP-WTKEDMQQFKSFWSEGSQPR 193
           + +  ++     A+ +EY+ I      +   +  EG       E++ +F++    G   R
Sbjct: 172 KHMKHLKRYINVAINKEYMDIQKYAFRKYKIKSIEGSHTHLAPEELHKFENLQLTGRYTR 231

Query: 194 L-----AFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDGFMKL 244
           L     AF F  Y+GLR SD       ++    Q      K+ KTG  + + L       
Sbjct: 232 LQKTKDAFLFCCYAGLRYSDFTNLTSANIVEFHQETWIIYKSVKTGMEVRLPL------- 284

Query: 245 LAMTPIGKETFFINNDK----QKMNATQFSIWFKAKATKAGVNK-----SAHGVRKFSAT 295
             +   GK    +   K            S   K     AG+ K     S H  R  +AT
Sbjct: 285 -YLLFEGKGIQILQRYKDDLNSFFKLKDNSNINKELNILAGLAKIDKRVSFHTARHTNAT 343

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           +    GA    +    G K+V   + Y    D
Sbjct: 344 LLLYNGANITTVQKLLGHKSVKTTQVYANIMD 375


>gi|260174248|ref|ZP_05760660.1| integrase protein [Bacteroides sp. D2]
 gi|315922519|ref|ZP_07918759.1| integrase [Bacteroides sp. D2]
 gi|313696394|gb|EFS33229.1| integrase [Bacteroides sp. D2]
          Length = 390

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 52/272 (19%), Positives = 98/272 (36%), Gaps = 30/272 (11%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVESRKHTPSSAI 134
           +++     SL  ++R +  S  + +     +  +  +T        + ++S+ +  ++  
Sbjct: 112 FKEEIANSSLKESTRQNHLSTLELLQEFKKEVLFTDLTFEFVSSFDNYLQSKGYHLNTIA 171

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP-WTKEDMQQFKSFWSEGSQPR 193
           + +  ++     A+ +EY+ I      +   +  EG       E++ +F++    G   R
Sbjct: 172 KHMKHLKRYINVAINKEYMDIQKYAFRKYKIKSIEGSHTHLAPEELHKFENLQLTGRYTR 231

Query: 194 L-----AFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDGFMKL 244
           L     AF F  Y+GLR SD       ++    Q      K+ KTG  + + L       
Sbjct: 232 LQKTKDAFLFCCYAGLRYSDFTNLTSANIVEFHQETWIIYKSVKTGMEVRLPL------- 284

Query: 245 LAMTPIGKETFFINNDK----QKMNATQFSIWFKAKATKAGVNK-----SAHGVRKFSAT 295
             +   GK    +   K            S   K     AG+ K     S H  R  +AT
Sbjct: 285 -YLLFEGKGIQILQRYKDDLNSFFKLKDNSNINKELNILAGLAKIDKRVSFHTARHTNAT 343

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           +    GA    +    G K+V   + Y    D
Sbjct: 344 LLLYNGANITTVQKLLGHKSVKTTQVYANIMD 375


>gi|256379909|ref|YP_003103569.1| integrase family protein [Actinosynnema mirum DSM 43827]
 gi|255924212|gb|ACU39723.1| integrase family protein [Actinosynnema mirum DSM 43827]
          Length = 325

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 41/287 (14%), Positives = 89/287 (31%), Gaps = 30/287 (10%)

Query: 68  PTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS-----GDFDYRKITTKHIRS 121
           P+ +   +  Y +       L+ ++  ++      ++        GD     +    +RS
Sbjct: 22  PSDVATALDAYERHLSLERGLSPHTVRAYLGDAVALLVHLAAGTPGDATVESVDLLGLRS 81

Query: 122 GVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
            + ++     + ++  +   S R L  WA R   +A +P   +  P+           + 
Sbjct: 82  WLAAQHAEGASRTTMARRAASARALTAWAARTGLLAEDPGPRLNAPRPHRTLPVVVRPDQ 141

Query: 179 MQQFK--------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
                               + R   E L  SG+R ++ C   +  +  +   I+    G
Sbjct: 142 AGAALEAAAAGADQHDPVALRDRAVVELLYASGVRVAELCGLDLDDVDYSQRVIRVLGKG 201

Query: 231 TI-ITVELPDGFMKLLA----------MTPIGKETFFINNDKQKMNATQFSIWFKAK--A 277
           +   TV       + +           +T       F+     +++             A
Sbjct: 202 SRERTVPFGVPAERAVRQWADLGRSALVTERSHRALFLGARGGRLDPRTARRVVHDVMGA 261

Query: 278 TKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
                +   HG+R  +AT   + GA    +    G  T+   + YT 
Sbjct: 262 VPGSADVGPHGLRHSAATHLLEGGADLRTVQELLGHATLATTQLYTH 308


>gi|255974675|ref|ZP_05425261.1| site-specific recombinase [Enterococcus faecalis T2]
 gi|255967547|gb|EET98169.1| site-specific recombinase [Enterococcus faecalis T2]
          Length = 391

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 50/347 (14%), Positives = 100/347 (28%), Gaps = 44/347 (12%)

Query: 11  VTKERTRHGKIIYYF-------RKGHGRRIRLPYPHES--TFIPAYMSALTGSTPKREYI 61
           V  ++ + GK  YYF            R  ++     +      AY   +     +    
Sbjct: 5   VKFKKDKRGK--YYFTASLGFDEVTGKRVQKMRSGFSTIKEAREAYAEIINNFGKEAYSS 62

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121
           NS          +   Y K    G +   +  +  S              + I   HI+ 
Sbjct: 63  NSTMLYEEFFYTIFLPYYK----GRVKERTYNNRLSMIKNTFAYFFKMKLKSIAPVHIQK 118

Query: 122 GVESRKHTPSSA--IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
                     +          ++    AV    ++ NP   V   K+  + I  WTKE+ 
Sbjct: 119 WQNELLEQYENTYVRNIYGLFQMSLDRAVVLGMISSNPAKIVGNVKKSKKEIDFWTKEEF 178

Query: 180 QQFKSFWSEGSQ----PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------ 229
           ++    +           +    L  +G+R  ++     + +  +   +  +K+      
Sbjct: 179 EKVVKTFYVEDYYQNFSFICIWLLFMTGMRIGEATALTWKDVNLDRRYLTVKKSLYYKNA 238

Query: 230 -----------GTIITVELPDGFMKLLAMTP-----IGKETFFINNDKQKMNATQFSIWF 273
                       +I T+ L +  +  L         +G   F ++ +             
Sbjct: 239 QTYELVSPKTRASIRTIYLDEDTVHYLRDWKKRQDDVGGIEFILSYNSVPTQKHTVRHII 298

Query: 274 KAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
           K  A  A V +   H +R   A++    G  A  +    G + V   
Sbjct: 299 KRHAKLAEVHDIRIHALRHSHASLLISMGTNALLIKERLGHEDVQTT 345


>gi|307150462|ref|YP_003885846.1| integrase family protein [Cyanothece sp. PCC 7822]
 gi|306980690|gb|ADN12571.1| integrase family protein [Cyanothece sp. PCC 7822]
          Length = 373

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 50/288 (17%), Positives = 104/288 (36%), Gaps = 27/288 (9%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS---GVESR 126
           T+  L  ++  S    +L   S   + +    +     +     I  K        + +R
Sbjct: 84  TVVTLFEKFMDSKA-KALLPTSLDKYRATLGYLKSLFPNQLASTIDVKDAEKFLEWINNR 142

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINP-CLSVERPKRKTE-GIRPWTKEDMQQFKS 184
             +P    + L  +R  ++W ++Q+Y+  NP    V R +   +   +P++ E+++    
Sbjct: 143 GVSPIVCRERLILIRAAWQWGIKQQYLDTNPWIDMVSRVRVPPKQRPKPFSSEEIKAIID 202

Query: 185 FWSE---GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-----------KTQKTG 230
            +      S      EFL  +G R +++     +HL ++  S+           K+ KT 
Sbjct: 203 AFRTDQYYSYYADYVEFLFRTGCRTAEAIGLRWKHLNDDCSSVWIGESLTRGVRKSTKTN 262

Query: 231 TIITVELPDGFMKLLAMT----PIGKETFFINNDKQKMNATQFSIW-FKAKATKAGVNKS 285
              T+ L     ++L       P  +   F ++    ++   F    + +   + G+N  
Sbjct: 263 RERTITLTPKLQQILLARRPANPDPEGLVFTSSKGGAIDDHNFRNRAWVSILQQLGLNYR 322

Query: 286 -AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD-RIRL 331
             +  R    + + D G    E+    G       E Y    + R RL
Sbjct: 323 KPYNTRHTFISHALDKGMNPVEVAQLTGHDVQTLYENYAGVVNSRPRL 370


>gi|254228151|ref|ZP_04921580.1| integron integrase subfamily [Vibrio sp. Ex25]
 gi|151939224|gb|EDN58053.1| integron integrase subfamily [Vibrio sp. Ex25]
          Length = 335

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 42/293 (14%), Positives = 86/293 (29%), Gaps = 55/293 (18%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWA 147
           A  +  S+  +  + I          +    +   +         A++          + 
Sbjct: 34  ANKTIESYLFWIKRFITFHQLAHPSTLAEDDVVQFLSYLAVKEKVAVKTQALALNSISFL 93

Query: 148 VRQEYVAINPCLSVERPK--RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLR 205
             ++Y      L +   K   + +     T+E++++F        + +L  + L  SGLR
Sbjct: 94  Y-RDYFKTPLSLDMRFQKSLTEKKLPVVLTREEIRRFVQHIDP--RYKLHIQLLYGSGLR 150

Query: 206 CSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLAMTPIGKETFFINND--- 260
             +  R  VQ +  +  +++    K G   TV L     + L         ++  +    
Sbjct: 151 VMECLRLRVQDIDYDYGAVRVWQGKGGKNRTVTLAKELHEPLKAQVNLARDYYFKDRHMP 210

Query: 261 -------------------------------------------KQKMNATQFSIWFKAKA 277
                                                      +  +N +      K  A
Sbjct: 211 GYAGVYISEGLRRKYPKAELDFNWHFLFPSTKLSTDRDTGELRRHHINESAIQRAVKRAA 270

Query: 278 TKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           T A + K+   H +R   AT   ++GA    +    G   V   + YT   +R
Sbjct: 271 TDACIEKTVTCHTLRHSFATHLLESGADIRTVQEQLGHTDVKTTQIYTHVIER 323


>gi|74311426|ref|YP_309845.1| putative integrase [Shigella sonnei Ss046]
 gi|73854903|gb|AAZ87610.1| putative integrase [Shigella sonnei Ss046]
          Length = 412

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 56/367 (15%), Positives = 119/367 (32%), Gaps = 38/367 (10%)

Query: 16  TRH---GKIIYYF--RKGHGRRI---RLPYPHESTFI-----------PAYMSALTGSTP 56
            RH   G + +YF  R G GR++   RL   +                 A+++       
Sbjct: 35  VRHSTSGLLTWYFTYRAGTGRQVSPERLRLGNYPDLSLKAAREKAAQCRAWLAEGKNPRY 94

Query: 57  KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT 116
           +          P T+K  ++ + +S        +           II + G     K   
Sbjct: 95  ELNRAVQDALAPVTVKEALTYWLESYA-KEKRTDYESLKSRINKHIISQIGALPLEKCEL 153

Query: 117 KHIRSGVESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV---ERPKRKTEGIR 172
           +H  +  +   K +P SA   L   +   K+  ++ Y   N    +   +  K+     R
Sbjct: 154 RHWLACFDQMAKRSPVSAGFLLQVCKQALKYCRKRRYAISNVLDDMVVGDVGKKAEISER 213

Query: 173 PWTKEDM-QQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT--- 226
             T +++ +  ++   +   P        L+  G R ++  R+ VQ              
Sbjct: 214 VLTNKELGELLRALDEKIYPPYYSALIRLLIVFGCRATELRRSEVQEWDFKEMLWTVPKE 273

Query: 227 -QKTGTIITVELPDGFMKLLAMTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGVN 283
             KT   I   +P+  +  +             +   K + + +++      +  +A   
Sbjct: 274 HSKTKVAIFRPIPEAILPFVTKLVEQNRHTGLLLGELKGQSSVSEYGRTAHRRINQA--P 331

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY--TKGADRIRLGIKN-SRRIS 340
            + H +R    T+  D G   H +      +       Y  ++  D  R  +     R+ 
Sbjct: 332 WTLHDIRHTFTTMLNDLGVDPHVVEQLTAHQLPGVQRVYNHSRYLDAKRDALNLWVERLE 391

Query: 341 SVVDSDD 347
            + ++D+
Sbjct: 392 LLQNNDE 398


>gi|83591694|ref|YP_425446.1| phage integrase [Rhodospirillum rubrum ATCC 11170]
 gi|83574608|gb|ABC21159.1| Phage integrase [Rhodospirillum rubrum ATCC 11170]
          Length = 402

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 47/319 (14%), Positives = 110/319 (34%), Gaps = 27/319 (8%)

Query: 49  SALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFES-YFDQIIRKSG 107
           +A      ++    +  K   T      ++ +      +A ++R    S YF ++  K G
Sbjct: 77  AAGKSPAKEKARDKARVKDAETFGAWAEKWLRGYQ---MAESTRDMRRSIYFRELKSKFG 133

Query: 108 DFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER-- 163
           +    +IT + +R+  ++   +  P++A+     +  +++WA+ +     NP   V    
Sbjct: 134 NQKLVEITHEDLRALTDAIVERGAPATAVHVREVVFQVYRWAIERGQKVENPAELVRPTT 193

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWS-EGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQNN 220
             R     R  T +++     +    G+ P  R A + LL + +R S+  +A    +  +
Sbjct: 194 IARFEPRDRALTPDEIGLMYQYVERVGTAPSFRAAAKLLLLTMVRKSELTKATWSEVNFS 253

Query: 221 IFSIK----TQKTGTIITVELPDGFMKLLAMTPI---GKETFFINNDKQ--KMNATQFSI 271
                      K      V L    + +         G +    +       M++   + 
Sbjct: 254 EALWTIPKERMKRRNPHLVFLSRQALDIFIALKTFAGGSDYVLPSRYDSDAPMSSATLNQ 313

Query: 272 WFKAKATKAGVNKS------AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
                   A            H +R+ ++T+  +AG     +      +       Y K 
Sbjct: 314 VLTLTYKLAQKEGKPLAKFGPHDLRRTASTLLHEAGYNTDWIEKCLAHEQRGVRAVYNK- 372

Query: 326 ADRIRLGIKNSRRISSVVD 344
           A+     ++  +  + ++D
Sbjct: 373 AEYRDQRVEMMQDWADMID 391


>gi|88813691|ref|ZP_01128918.1| Integron integrase [Nitrococcus mobilis Nb-231]
 gi|88789045|gb|EAR20185.1| Integron integrase [Nitrococcus mobilis Nb-231]
          Length = 320

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 45/309 (14%), Positives = 92/309 (29%), Gaps = 62/309 (20%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH----T 129
           L+ + R    +   ++ +  ++  +  + I        R +    +   + +        
Sbjct: 7   LLDQVRDRIRFRHYSIRTEQAYLGWIRRFILFHRKRHPRDMGAPEVERFLSALATEYNVA 66

Query: 130 PSSAIQFLTSMRVLFK--WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            S+  Q L+++  L++    +   ++       V+R KR        T+E+++   +   
Sbjct: 67  ASTQNQALSAILFLYREVLGIELPWLD-----GVKRAKRPQRLPVVLTREEIRSVLAHLQ 121

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIIT----------- 234
              +  L    L  +GLR  +  R  V+ +        ++  K G               
Sbjct: 122 --GRNALMASLLYGAGLRLLECVRLRVKDVELDRRQIVVRDGKGGRDRVTLLPESMRPSL 179

Query: 235 ---------------------VELPDGFMKLLAMTPI--GKETFFINN-----------D 260
                                V LP    +     P   G +  F +             
Sbjct: 180 EEQIDRVREIHNQDLTDGFGAVWLPHALARKYPNAPREFGWQYVFPSAKRSTDPRSGRRG 239

Query: 261 KQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           +  ++        K     AGV    S H  R   AT   +AG     +    G + V+ 
Sbjct: 240 RHHIDEQTLQRAVKQAVRAAGVSKPASCHTFRHSFATHLLEAGYGIRTIQELLGHRDVNT 299

Query: 319 AETYTKGAD 327
              YT  A+
Sbjct: 300 TMIYTHVAN 308


>gi|126461524|ref|YP_001042638.1| putative tyrosine recombinase [Rhodobacter sphaeroides ATCC 17029]
 gi|126103188|gb|ABN75866.1| putative tyrosine recombinase [Rhodobacter sphaeroides ATCC 17029]
          Length = 101

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 1/86 (1%)

Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMA 309
           G   + +    +       S WF A A +AG+  ++AHG+RK+     A+ GA+   + +
Sbjct: 6   GSPVYMLTEYGKPRTQKGVSQWFSAAAREAGLEGRTAHGLRKYRMNALAEHGASVLVMQS 65

Query: 310 TYGWKTVDQAETYTKGADRIRLGIKN 335
             G  T+ + + YT+ ADR R+    
Sbjct: 66  WVGHTTLLEVQEYTRRADRRRVISGG 91


>gi|326693538|ref|ZP_08230543.1| prophage Lp2 protein 2, integrase [Leuconostoc argentinum KCTC
           3773]
          Length = 355

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 42/314 (13%), Positives = 101/314 (32%), Gaps = 23/314 (7%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD 110
               T  ++  ++   K   +  +  E+        L   S+  + +    I     +  
Sbjct: 40  WAIETESQKINDTLTIKDGNVADMFIEWYHVFKEPQLETKSKTWYTTTHKVISDYWLNKK 99

Query: 111 YRKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER---PK 165
             +I +K  +  +     T   SS       +    ++AV ++Y++ +   +++     +
Sbjct: 100 LSEINSKMFQELINDYGKTHVKSSVSHVKNMISSFIRYAVDEDYISKDFTRNIKSFSSVE 159

Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEF-LLYSGLRCSDSCRAGVQHLQNNIFSI 224
            K + ++    +++++ K+                +YSG R S+              +I
Sbjct: 160 SKDKDLKFLEVDELEKLKNEIINNDAVSSRMILTAIYSGARYSEVAGLTRDDFNFENNTI 219

Query: 225 KTQKT--------------GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS 270
              KT               +   V++P  FM++      G    F + +         +
Sbjct: 220 TINKTWQAEDRAYKSTKTVSSNRVVDMPTDFMEIAKSWHYGSRFAFESTNGLPPTNNAVN 279

Query: 271 IWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADR 328
              +    K      + HG+R   A+           +    G   V+     YT   ++
Sbjct: 280 KQLRRYLEKNDSKIITFHGLRHTHASYLLSRDVAIQYVSERLGHADVNITLSVYTHLLEK 339

Query: 329 IRLGIKNSRRISSV 342
            R   + S+ +S +
Sbjct: 340 KR-SHETSKALSEL 352


>gi|323495077|ref|ZP_08100166.1| phage integrase family protein [Vibrio brasiliensis LMG 20546]
 gi|323310734|gb|EGA63909.1| phage integrase family protein [Vibrio brasiliensis LMG 20546]
          Length = 440

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 57/357 (15%), Positives = 109/357 (30%), Gaps = 46/357 (12%)

Query: 10  FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
           +V K   R+ K+      G    I +          A   A  G  P  E     ++   
Sbjct: 50  YVQKVNGRNVKVT----IGKFPEITVELARSHARDIAQQIA-GGINPNVEK--RKKRNAD 102

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFD--------QIIRKSGDFDYRKITTKHIRS 121
           T   L + Y        L + +    ES            +  K G+      T    + 
Sbjct: 103 TFNDLFTIYE---ELFKLDIKAGKRRESSLTSSKTLYRLHLKAKVGNTPIDNFTKADAKQ 159

Query: 122 GVES-RKHTPSSA-IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI-RPWTKED 178
            +         S     LT ++ +F  A     V  NP  ++++         R  + E+
Sbjct: 160 LLNRILSEKGYSLHNHTLTLLKSMFNRAD----VPTNPFGTLKKIDESYHRRQRTLSPEE 215

Query: 179 MQQFKSFWSEGSQPR-LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKTGTII 233
           +Q+      +  +        LL +G R +       + +     +        K+    
Sbjct: 216 LQRLFKSLDQEQEVYQDCVLLLLLTGQRKATVLSMEWREINRENQTWSIPTSKIKSKKPH 275

Query: 234 TVELPDGFMKLLAM----TPIGKETFFINND---KQKMNATQFSIWFKAKATKAGV---- 282
            V L    M +L      +P G+E  F +         + +    +++    +AG+    
Sbjct: 276 VVPLTSEAMAILERRAKSSPRGEEFVFPSRRSQSGHITDKSGKGGFWRRITERAGLYNSD 335

Query: 283 ---NKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTK-GADRIRLGIK 334
              N   H +R+  AT    +G +        G   V   ++ Y     D +R  ++
Sbjct: 336 PEKNLQVHDLRRTLATYQVSSGGSLQATSKLLGHSNVSITSDVYAHLSVDIVRQELE 392


>gi|260170442|ref|ZP_05756854.1| transposase [Bacteroides sp. D2]
 gi|315918796|ref|ZP_07915036.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313692671|gb|EFS29506.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 409

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/276 (13%), Positives = 89/276 (32%), Gaps = 26/276 (9%)

Query: 89  VNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVE----SRKHTPSSAIQFLTSMRV 142
            N   +     + + +     D  + ++  + IR   +     R     +   +L  ++ 
Sbjct: 135 PNYLYTRRRLGEFVSKNYNVKDLAFSQLNEQFIREFQDYLILERNLGVETVRHYLAILKK 194

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ-----QFKSFWSEGSQPRLAFE 197
           + + A ++ +   +  ++    K+K    R  ++E+ +     QF+         R  F 
Sbjct: 195 ICRIAFKEGHSDRHYFVNYPLLKQKVNPPRTLSREEFEKIRDLQFEEHRWSHITTRDMFL 254

Query: 198 FLLYSGLRCSDSC-----RAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP-IG 251
           F  Y+G    D               +     +  K G +  V+L    ++L+       
Sbjct: 255 FACYTGTAYVDVIFITNDNLSKDDAGDLWLKYQRGKNGKLCRVKLLPEAIELIEKYKNPS 314

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS-ADAGATAHELM 308
           +ET F      KM         ++     G+    + H  R   +++   + G     + 
Sbjct: 315 RETLF-----PKMEYNALKWNLQSIRQLIGMTGPLTYHMGRHSFSSLITLEGGVPIETVS 369

Query: 309 ATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
              G   +   + Y +     +L     + I +  D
Sbjct: 370 KMLGHSDIKTTQIYAR-VTPKKLFEDMDKYIEATKD 404


>gi|325272107|ref|ZP_08138542.1| integrase family protein [Pseudomonas sp. TJI-51]
 gi|324102750|gb|EGC00162.1| integrase family protein [Pseudomonas sp. TJI-51]
          Length = 299

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 45/287 (15%), Positives = 92/287 (32%), Gaps = 18/287 (6%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
              R        R+     +   +         + + + G   +  +++    + TTL  
Sbjct: 4   YEKRGDAWRAQIRRKGYPTLSATF-DTKAEAQRWAAEIEGDMSRARFVDMREAESTTLAE 62

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES-RKHTPSS 132
            +  Y   +   S    ++            K        I +  + +  ++  K   S+
Sbjct: 63  ALDRYL--SEVTSTKKGAKQEQVRIKKWKEHKLASKGLAAIRSSDMAAYRDAELKEGKST 120

Query: 133 AIQFLT--SMRVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           A   L    +  L+  A ++  +    NPC ++  PK   E  R  T  ++        +
Sbjct: 121 ATVRLNLAVISHLYTVATKEWGIEGLTNPCRAIRMPKGSKERDRRPTPAELTGLYKAAGQ 180

Query: 189 GSQPRLAF-EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
            +     F E  + + +R S+        ++  +  ++  K G    V L    + LL  
Sbjct: 181 MNAQLPVFIELAVETAMRRSELLMLRRDQVRGKVAYLEDTKNGERRAVPLSSRAIALLEC 240

Query: 248 --TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRK 291
             TPIG   +F       +     S +F      AG+     H +R 
Sbjct: 241 LPTPIGGGRYF------SLALNTISNYFPRACEAAGIEGLRLHDLRH 281


>gi|331004724|ref|ZP_08328177.1| hypothetical protein HMPREF0491_03039 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330408981|gb|EGG88441.1| hypothetical protein HMPREF0491_03039 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 346

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/307 (12%), Positives = 94/307 (30%), Gaps = 45/307 (14%)

Query: 82  AHWGSLAVNSRISFESYFDQIIR--------KSGDFDYRKITTKHIRSGVE----SRKHT 129
                 + N+  S+    + +             +  +  +    I   +      R  +
Sbjct: 20  PEEQKCSQNTIRSYRKSLELLFDFVKEKNSVALNEITFEMMDRSTISEFLSYLETERNCS 79

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP---WTKEDM----QQF 182
            S+    L  +R  FK+A +++   I     +++ KR  +        +++ +    +Q 
Sbjct: 80  ISTRNHRLHCIRAFFKYAAQEDITVIAHLEEIQKVKRAKQPETIVEHMSEDAVQAILEQP 139

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT--QKTGTIITVELPDG 240
            +   +G +      FL  +G R  +     +  +Q   +   T   K     ++ L D 
Sbjct: 140 DTCTEKGKRDTFLLLFLYKTGARVQELVDIRLCDIQLGKYPKVTIHGKGAKTRSIPLRDD 199

Query: 241 FMKLLAM----------TPIGKETFFINND--KQKMNAT-------QFSIWFKAKATKAG 281
            ++ L                +  F++  +  +++M          ++ +  +    +  
Sbjct: 200 VVQHLKKYLTLFHQEQNLFSDQYLFYVTRNQIRKRMTEDNVRKLVAKYGVQARKICKEVP 259

Query: 282 VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
            N   H  R   A I    G     +    G   ++    Y      ++      + +  
Sbjct: 260 ENVHPHLFRHSWAMILYQNGVDLTLISQWLGHSNLETTLIYAHADTELK-----RKALEK 314

Query: 342 VVDSDDP 348
            V  D P
Sbjct: 315 AVPVDSP 321


>gi|227540358|ref|ZP_03970407.1| phage integrase family protein [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227239682|gb|EEI89697.1| phage integrase family protein [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 405

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 52/294 (17%), Positives = 101/294 (34%), Gaps = 37/294 (12%)

Query: 66  KKPTTLKWLISEYRKSAHW---GSLAVNSRISF----ESYFDQIIRKS--GDFDYRKITT 116
           +KP TL   I+ + K+         A  +   F        D +  +    D + + I  
Sbjct: 104 EKPHTLVEAITLHNKNMKALVGKDYAQGTLKRFEVLERHVLDFLAFQYRKNDINIKSIDH 163

Query: 117 KHIRSG----VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
             I +        + +T ++AI+ L ++    +  + ++++  +P    +  K K     
Sbjct: 164 DFISAFDFYLRTEKANTNNTAIKHLKNLGKNIRICISKKWINADPFFGYK-LKSKDVHRD 222

Query: 173 PWTKEDMQQFKSFWSEGSQPRLA-----FEFLLYSGLRCSDSCRAGVQHLQNN-----IF 222
             T  ++Q+      E +  RL+     F F  Y+GL  +D  +     ++         
Sbjct: 223 YLTATELQKIVE--KEFTTLRLSQVRDFFLFSCYTGLSYADVQKLKPADIRIGADGEPWI 280

Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW---FKAKATK 279
               QKT T   + L     K+L      K+     N  + +  +            A  
Sbjct: 281 ITYRQKTNTRAAIPLLPVAKKILDRY---KDHPMCINKGKALPISSNQKMNEYLIEIAAL 337

Query: 280 AGVNKSAHGVRKF----SATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           AGV+K+  G R      + T++   G     +    G   +   + Y K  D  
Sbjct: 338 AGVDKTL-GNRIAKRTFATTVTLMNGVPIESVSKMLGHTNLRTTQLYAKILDEK 390


>gi|167041842|gb|ABZ06583.1| putative Phage integrase family protein [uncultured marine
           microorganism HF4000_097M14]
          Length = 317

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/230 (17%), Positives = 74/230 (32%), Gaps = 19/230 (8%)

Query: 96  ESYFDQII-RKSGDFDYRKITTKHIRSGVESRKH--TPSSAIQFLTSMRVLFK-WAVRQE 151
            +  + I+     ++   ++T   I    +  K     ++  + L  +  +F  W     
Sbjct: 81  RNIINTILQETFAEYPINRVTPSIIGKFRDKFKDEVKGNTLNRKLDVISTMFTTWRKEWG 140

Query: 152 YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCR 211
           +   NP LS+ RPK      R +T +++           Q R      L +G+R S+  R
Sbjct: 141 FPVDNPVLSIRRPKNSEPRDRRFTDQEINLLLRGNRTTEQMRTIINLALETGMRPSEMLR 200

Query: 212 AGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI 271
              +H++     I   K+    T+ L     ++L      K      N        +   
Sbjct: 201 IHPEHIKGQTLFIPVAKS-RPRTIPLTPTAQRIL------KSCTLPFNVG----LDRLGK 249

Query: 272 WFKAKATKAGVNKSAH--GVRK-FSATISADAGATAHELMATYGWKTVDQ 318
            F+      G+ K AH   +R         +        M   G K    
Sbjct: 250 RFRRLCKHYGI-KDAHLYDIRHQSLTNFMLNKKLDVGSTMLIAGHKDPRM 298


>gi|307610785|emb|CBX00398.1| hypothetical protein LPW_21181 [Legionella pneumophila 130b]
          Length = 386

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/255 (12%), Positives = 70/255 (27%), Gaps = 32/255 (12%)

Query: 99  FDQIIRKSGDFDYRKI---TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI 155
              I    GD    ++   T +      +  K    S    L  +R +   A   E++  
Sbjct: 88  LKSICPFIGDLTLEQVHIGTLQSFIKAKQEAKLKTKSINNTLELVRHILNVAAT-EWIDE 146

Query: 156 NP------CLSVERPKRKT-EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD 208
           N          ++    K      P +  +  +              F+    +G R  +
Sbjct: 147 NSLTWLLVAPKIKLLPVKDARAPLPLSWSEQSRLLEALPFHLNQMARFKV--NTGCREQE 204

Query: 209 SCRAGV-----------------QHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251
            C+                     H+  +    +  K G    V L D    ++      
Sbjct: 205 VCQLRWEWEKHVPSLNTSVFIIPSHINRDGELRQLVKNGEDRLVILNDEAKAVIEEVRGI 264

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMAT 310
              F  + + + +     + W +    KA + +   H ++         AG +  +    
Sbjct: 265 HSEFVFSYNGKPITRMNNTAW-RNARKKANLCDLRVHDLKHTFGRRLRAAGVSYEDRQDL 323

Query: 311 YGWKTVDQAETYTKG 325
            G ++      Y++ 
Sbjct: 324 LGHRSGRITTHYSQA 338


>gi|289649043|ref|ZP_06480386.1| integrase family protein [Pseudomonas syringae pv. aesculi str.
           2250]
          Length = 418

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 49/307 (15%), Positives = 103/307 (33%), Gaps = 34/307 (11%)

Query: 50  ALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGD 108
           AL     KR    +      T KWL            +A +++   +S  D+ I+    +
Sbjct: 83  ALEKQREKRRLTAAKTFGEMTGKWLAGA--------RMADSTKAMRKSIVDRDILPAFEN 134

Query: 109 FDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
               +IT+  +R+     K    P++A+     ++ ++ +A+       NP   V     
Sbjct: 135 RQLNEITSDDLRALCNKVKERGAPATAVHIRDIVKQVYAFAILHGEKVENPAADVGAASI 194

Query: 167 KT--EGIRPWTKEDMQQF-KSFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221
            T     R  +  +++   +   S  + P  RLA   +L + +R S+  +A    +    
Sbjct: 195 ATFVPKDRALSPLEIRLMARQMESVATYPTIRLALRMILLTLVRKSELIQATWDEVDFEN 254

Query: 222 FSIK----TQKTGTIITVELPDGFMKL---LAMTPIGKETFFINNDK-----QKMNATQF 269
            +        K      V L    + +   L     G +    +              + 
Sbjct: 255 ATWTIPKQRMKGRNPHVVYLSRQALDIFVALHTCAAGSKFVLPSRYDADRCMSNATLNRV 314

Query: 270 SIWFKAKATKAGVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKG 325
           +     +A  AG+     + H +R+  +T+  + G     +      +    +   Y K 
Sbjct: 315 TQIVAERAKAAGLPLEPFTVHDLRRTGSTLLNEIGFNRDWIEKCLAHEDGRSSRSIYNKA 374

Query: 326 --ADRIR 330
             A++ R
Sbjct: 375 EYAEQRR 381


>gi|255067353|ref|ZP_05319208.1| xylulose-5-phosphate/fructose-6-phosphate phosphoketolase
           [Neisseria sicca ATCC 29256]
 gi|255048323|gb|EET43787.1| xylulose-5-phosphate/fructose-6-phosphate phosphoketolase
           [Neisseria sicca ATCC 29256]
          Length = 352

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 48/247 (19%), Positives = 87/247 (35%), Gaps = 16/247 (6%)

Query: 92  RISFESYFDQIIR-----KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKW 146
           +   +S  D I R     K        ++   I   V+    + S+  +++  +R +   
Sbjct: 70  KSDKKSIKDDICRLRMLPKLRGVYLHHLSRDFIMDVVDRLPCSNSTKNRYIALIRSILYK 129

Query: 147 AV-RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLR 205
           A     ++   P L +++   K         E+ +Q  +   +    R   +F   +GLR
Sbjct: 130 AQNEWGWIDKVPKLKLKKEAEKRIRW--LKPEEAEQLINALPD-DHWRAIAKFSFCTGLR 186

Query: 206 CSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGFMKLL-AMTPIGKETFFINND 260
             +      + +  N           K G  I V L D  +++L     I K   F N +
Sbjct: 187 QRNVFGLRWEQVDLNRKTAWIYPDEAKAGRPIGVPLNDVAIRVLSERMGIHKTYVFTNRE 246

Query: 261 KQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
            + + A   S  +K    +AG+ N   H +R   A+     G     L    GW+ +D  
Sbjct: 247 NKPITALS-SRMWKRTLERAGISNFRWHDIRHTWASWLVQRGVPLVALKEMGGWERLDMV 305

Query: 320 ETYTKGA 326
             Y   A
Sbjct: 306 MRYAHLA 312


>gi|198282468|ref|YP_002218789.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|198282805|ref|YP_002219126.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|198284132|ref|YP_002220453.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218666115|ref|YP_002425003.1| site-specific recombinase, phage integrase family
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|218666952|ref|YP_002425321.1| site-specific recombinase, phage integrase family
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|218667875|ref|YP_002426786.1| site-specific recombinase, phage integrase family
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198246989|gb|ACH82582.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|198247326|gb|ACH82919.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|198248653|gb|ACH84246.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218518328|gb|ACK78914.1| site-specific recombinase, phage integrase family
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|218519165|gb|ACK79751.1| site-specific recombinase, phage integrase family
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|218520088|gb|ACK80674.1| site-specific recombinase, phage integrase family
           [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 332

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 43/274 (15%), Positives = 86/274 (31%), Gaps = 37/274 (13%)

Query: 85  GSLAVNSRISFE-----------SYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132
            +L++N++ S+               ++ + +    D      +   S +E  +H   ++
Sbjct: 23  RNLSINTQRSYRDMLSLFLPHVSKQLNKSVDRLTVSDLSADLIRQFLSDIEESRHCLAAT 82

Query: 133 AIQFLTSMRVLFKWAVRQ-----EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS--- 184
             Q L  +  L ++         E+ +      +   K    GI    K +M        
Sbjct: 83  RNQRLGGLHALARFIGENSPEHIEWCSQ--IRLIPFKKTAYPGITYLEKPEMDALLESPD 140

Query: 185 -FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGF 241
               +G +      FL  +G R S++    +  +        I   K     T  L    
Sbjct: 141 RQTPQGQRDYALLLFLYNTGARASEAADLRIVDVDWHAQCAHII-GKGNKRRTCPLWPTT 199

Query: 242 MKLLAMTPIG---KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--------SAHGVR 290
           +  L          +  F+N + Q +         +  A +A V          S H +R
Sbjct: 200 LDQLRALATQRGLDQRVFLNRNGQPITRFGIHTMVERHAARACVQVPSMSTKQVSPHVIR 259

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             +AT    AG   + + A  G  ++     Y +
Sbjct: 260 HSTATHLLRAGVDINTVRAWLGHVSLTTTNIYAE 293


>gi|82776667|ref|YP_403016.1| integrase [Shigella dysenteriae Sd197]
 gi|309789020|ref|ZP_07683615.1| integrase [Shigella dysenteriae 1617]
 gi|6759954|gb|AAF28112.1|AF153317_4 integrase [Shigella dysenteriae]
 gi|81240815|gb|ABB61525.1| integrase [Shigella dysenteriae Sd197]
 gi|308923291|gb|EFP68803.1| integrase [Shigella dysenteriae 1617]
          Length = 409

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 50/289 (17%), Positives = 101/289 (34%), Gaps = 20/289 (6%)

Query: 53  GSTPKREYI--NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD 110
           G  P+R+ +     + +  T+K     + +           +++   + + I    G+  
Sbjct: 93  GQDPRRQVMLEKQKKSQAMTVKEAFDYWEQHYCIPEGLKKLKVNRRDFNNHIAPVLGNVI 152

Query: 111 YRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK--- 167
             + T  H  S  +S      +  Q L  M+  F++   +  ++INP  S+ R       
Sbjct: 153 VEQTTKAHWLSLFDSMGRRVVTG-QMLGLMQRTFRFCSNRGVISINPLESLRRSDVGMAA 211

Query: 168 TEGIRPWTKEDMQQF-KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226
               R  + E+++    +    G + +L  +FLL +G R ++   A  +    N  +   
Sbjct: 212 ATRDRKLSDEEIKIVWSALSDMGERQKLVVKFLLMTGCRTAEIRTARWEWFDFNENTWTV 271

Query: 227 Q----KTGTIITVELPDGFMKLLAMTP--IGKETFFINNDK------QKMNATQFSIWFK 274
                KTG  +   LP   +KL+         +              +       +++  
Sbjct: 272 PASEYKTGKTVRRALPPAIVKLMQEVKKTSVSQHVLTRARYNGPEDDKPPQQPHIALFSA 331

Query: 275 AKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
               K G+   S H +R+  AT  ++ GA  H +    G         Y
Sbjct: 332 QIIAKTGMKTWSLHDLRRTVATRLSELGAPPHVVEKLLGHHMSGVMARY 380


>gi|307565482|ref|ZP_07627968.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
 gi|307345813|gb|EFN91164.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
          Length = 410

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 46/272 (16%), Positives = 91/272 (33%), Gaps = 31/272 (11%)

Query: 94  SFESYF-DQIIRKSGDFD--YRKITTKHIRSGVESRKHTPSSAIQF----LTSMRVLFKW 146
               +F + +I K G  D    + T   ++            A       L +++ +  +
Sbjct: 138 VLRRHFAEFLIYKYGKKDIGLAEFTPSIVQDFELYLSTAAGCAYNTSVKKLKALKTVTIY 197

Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ---PRLAFEFLLYSG 203
           A ++ Y+  +P L+  R   +       T E++ +  +      +    R  F F  ++G
Sbjct: 198 AQKRGYLLHDPFLN-HRFHLEPVNRGFLTDEEIMKIANKEIAIQRLELVRDVFIFSCFTG 256

Query: 204 LRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDGFMKLLAMTP-----IGKET 254
           L   D       ++           K QKT     V L D    ++A         GK  
Sbjct: 257 LAYIDVSNLTPDNIVTLDDKLWIMTKRQKTSVETNVLLLDIPKSIIAKYSHKTYRDGKLF 316

Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYG 312
             + N K        + + K  A   G+ K  + H  R   AT+S   G     +    G
Sbjct: 317 PILTNQKT-------NAYLKEIADICGIKKNQTFHLARHTFATMSLSKGVPMESVSKMLG 369

Query: 313 WKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
              +   + Y +  ++      +  +++  +D
Sbjct: 370 HTNIKTTQIYARITNKK--IEDDMEQLAGKLD 399


>gi|293415891|ref|ZP_06658531.1| integrase [Escherichia coli B185]
 gi|291432080|gb|EFF05062.1| integrase [Escherichia coli B185]
          Length = 395

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/257 (14%), Positives = 87/257 (33%), Gaps = 16/257 (6%)

Query: 85  GSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKHTPS--SAIQFLTSMR 141
            S++ +         ++ I    G+   ++I  + +   +E  K   +  +  + +  + 
Sbjct: 120 KSVSPDYAKDIWRSLEKDIFPAIGEIPVQQIKARTLVETLEPIKARGALETVRRLVQRIN 179

Query: 142 VLFKWAVRQEYVAINPCLSVERP--KRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLAF 196
            +  +AV    +  NP   V     K K + +     E++          +     R   
Sbjct: 180 EIMIYAVNTGLIDANPASGVGMAFEKPKKQNMPTLRPEELPALMRSLIMSNLSVPTRCLI 239

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGFMKLLAMTP--- 249
           E+ L + +R S++       +  +    +   +  K      V L    + +L +     
Sbjct: 240 EWQLLTLVRPSEASGTRWSEIDLDAKLWVIPAERMKAKREHIVPLSPQALDILEVMKPIS 299

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMA 309
             +E  F + +  + +    +     K    G    AHG+R  ++T   +AG  A  + A
Sbjct: 300 AHREHVFPSRNNPRQSMNSQTANAALKRIGYGGKLVAHGLRSIASTAMNEAGFNADVIEA 359

Query: 310 TYGWKTVDQAET-YTKG 325
                  ++    Y + 
Sbjct: 360 ALAHSDKNEVRKAYNRS 376


>gi|322420409|ref|YP_004199632.1| integrase family protein [Geobacter sp. M18]
 gi|320126796|gb|ADW14356.1| integrase family protein [Geobacter sp. M18]
          Length = 429

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 58/332 (17%), Positives = 100/332 (30%), Gaps = 56/332 (16%)

Query: 48  MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG 107
             A+             R     L  +IS Y   +   + A  +++  E  F  I    G
Sbjct: 72  QLAVVIQELVPSMTRGKRPAAFKLSDMISRYIACSE-KTWAPKTKLENEGSFKLIQDIMG 130

Query: 108 DFDYRKITTKHIRSGVESRKHTP--------------------------SSAIQFLTSMR 141
           D D + I  + +     +    P                          +SA + LT + 
Sbjct: 131 DIDLKAINKQVVMDFRNTLVTLPPNMYKLYPGKTIQQVSAMNGITPMSTTSANKHLTRLS 190

Query: 142 VLFKWAVRQEYVAINPCLS--VERPKRKTEGIRPWTKEDMQQFKSFWS--EGSQPRLAFE 197
            L K AV++  + IN      V+  +R  E  + +T ED+++             R    
Sbjct: 191 SLLKSAVQESRMPINYAEGMQVQDKRRSDEVRKTYTVEDIRKVIEHLPCQLNHPERYWIP 250

Query: 198 FL-LYSGLRCSDSCRAGVQHLQ----------NNIFSIKTQKTGTIITVELPDGFMKL-- 244
            L +Y+G+R  + C+  V+ +Q          N+    K +   +   + +    M L  
Sbjct: 251 LLGMYTGMRLDEICQLHVEDVQQHGEVWSININDHGDKKLKNLSSRRIIPVHPTLMGLGF 310

Query: 245 ----LAMTPIGKETFFINNDKQKM--NATQFSIWF----KAKATKAGVNKSAHGVRKFSA 294
                     G    + N  ++      + F  WF    +   TK    K  H  R   A
Sbjct: 311 LEYVDHQRKRGAHRLWTNLTRRDADGYGSAFGKWFQRFNREYVTKDK-AKVFHSFRHTVA 369

Query: 295 TISADAGATAHELMATYGWKTVDQAE-TYTKG 325
                 G     +    G          Y K 
Sbjct: 370 DTLKQKGVQEVVIAEIMGHANESMTTGRYGKR 401


>gi|257055983|ref|YP_003133815.1| site-specific recombinase XerD [Saccharomonospora viridis DSM
           43017]
 gi|256585855|gb|ACU96988.1| site-specific recombinase XerD [Saccharomonospora viridis DSM
           43017]
          Length = 354

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 46/306 (15%), Positives = 91/306 (29%), Gaps = 69/306 (22%)

Query: 85  GSLAVNSRISFESYFDQIIRKSG-DFDYRKITTKHIRSGVESRKHTPS------------ 131
             L+  +  S+     +     G D D   I    +   + +   +P             
Sbjct: 30  SQLSAATLTSYRRDLLEFTTLLGPDTDLDSIEADDLEIALTTLAKSPDRRYRVGVKIAED 89

Query: 132 ----------SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE---------GIR 172
                     S  ++ T++R LF+WAV + YV ++P + V  P+  T             
Sbjct: 90  GSTPPGRGPYSLARWFTAVRGLFRWAVDKGYVQVDPTVKVTPPRVPTRVGGTRVGLRLDE 149

Query: 173 PWTKEDMQQFKSFWSEGSQPRL------AFEFLLYSGLRCSDSCRAGVQHLQNN------ 220
             T  +    +S     +  RL          L+ SG R S+ C A    ++ +      
Sbjct: 150 ALTLREAPAVRSSGQLRADQRLSLRDEAILRLLVESGPRVSELCGANRSDIRVHEETGTP 209

Query: 221 IFSIKTQKTGTIITVELPDG--------FMKLLAMTPI---------------GKETFFI 257
           +  ++  K      + L             +     P                     F+
Sbjct: 210 VLHVR-GKGRKDRDLPLSKPTVEVIERYLAEERPAPPTPQRPHDMVERRRIDDAAGALFV 268

Query: 258 NNDKQKMNATQFSIWFKAKATK-AGVNKSAHGVRKFSATISADAGATAHELMATYGWKTV 316
           +    +++        +  A +  G   + H +R  + T+ A AG     +    G  ++
Sbjct: 269 SVRGWRLSPRDVQRMVQRYAKEFLGRRATPHSLRHTALTVLARAGVDIATVAQIAGHASL 328

Query: 317 DQAETY 322
                Y
Sbjct: 329 STTSVY 334


>gi|213647139|ref|ZP_03377192.1| integrase [Salmonella enterica subsp. enterica serovar Typhi str.
           J185]
          Length = 366

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 52/346 (15%), Positives = 107/346 (30%), Gaps = 80/346 (23%)

Query: 75  ISEYRKSAHWGSL-----AVNSRISFESYFDQIIRKSGD--------------------F 109
           I+    +  W  L     + N+   +ES    ++   G+                     
Sbjct: 18  ITVLELTERWSELKRMEISSNTMSRYESIIKNMLPLIGENKMVSAVTTEDLLYVRKELLT 77

Query: 110 DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
            ++ +   H R+ V+ RK   S+   ++  M  +F++     Y   NP   + R K+   
Sbjct: 78  GFQVMKKDH-RTQVKGRKS--STVNNYMMLMAEIFQFGTDNGYAKENPFSGINRLKKAKG 134

Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229
              P T ++  +F        Q R  +   +Y+G+R  + C    + +  +  +I  ++ 
Sbjct: 135 EPDPLTTDEFIRFIQACG-HQQMRNLWSLAVYTGMRHGELCGLAWEDIDLHAGTIIVKRN 193

Query: 230 --------------GTIITV----ELPDGFMKLLAMTPIGKE------------------ 253
                         GT   +       D       +T +G++                  
Sbjct: 194 LTQTDEFTLPKTDAGTDRVIYLIQPAIDALRNQAQLTRLGRQFEVEVKLREYGQSVIQPC 253

Query: 254 TFFIN--------NDKQKMNATQFSIWFKAKATKAGVNKS-AHGVRKFSATISADAGATA 304
           TF  +                   +  +     +AG+    A+  R   A  S  AGA  
Sbjct: 254 TFVFSPQCVKRGPRTGYHYAVNSINKIWAPIIKRAGIRYRNAYQSRHTYACWSLSAGANP 313

Query: 305 HELMATYGWKTVDQA-ETYT-----KGADRIRLGIKNSRRISSVVD 344
           + +    G        + Y      K A+++ L  +   R +  + 
Sbjct: 314 NFIATQMGHTDAQMVYKVYGKWMSEKSAEQVSLLNQALSRYAPSLP 359


>gi|197119379|ref|YP_002139806.1| integrase family protein [Geobacter bemidjiensis Bem]
 gi|197088739|gb|ACH40010.1| integrase family protein [Geobacter bemidjiensis Bem]
          Length = 436

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 41/318 (12%), Positives = 95/318 (29%), Gaps = 59/318 (18%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA----------- 133
              ++ +++  E+    ++   GD     I  K      ++    P++            
Sbjct: 120 MGWSLKTKMENEASLRLLLDVIGDGAIENIDRKTASLLRDALCILPANVYKVLPGIPVSR 179

Query: 134 --------------------IQFLTSMRVLFKWAVRQEYVAINPCLS--VERPKRKTEGI 171
                                + L+    L  + VR+  +  NP     ++R ++  E  
Sbjct: 180 VLEELKTGCSSHPPMSTTTVNKHLSRFSTLLAYCVREGILRSNPAEGMTLKRKRKADEER 239

Query: 172 RPWTKEDMQQFKS--FWSEGSQPRLAF-EFLLYSGLRCSDSCRAGVQHLQN----NIFSI 224
           + ++ +D++       + +    R       +Y+GLR  + C+   + +      +  S+
Sbjct: 240 KAYSPQDLKMIFENLRYHDSEPERYWIPILSMYTGLRLDELCQLYTEDVTEYDGVHCISV 299

Query: 225 --KTQKT----GTIITVELPDGFMKL------LAMTPIGKETFFIN-----NDKQKMNAT 267
                K      +   V +    +KL            G+   ++N      D       
Sbjct: 300 ADTQDKKVKTLSSRRIVPVHPRLVKLGFLAYVRKAKANGQLRLWMNLKRRDADGYGSAYG 359

Query: 268 QFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGA 326
           +    F  K       K+ H  R   A      G     +    G          Y K  
Sbjct: 360 KVFQRFNRKYITNDPLKTFHSFRHTFANSLKQQGVQESLIAEILGHTNPSITTGRYGKRF 419

Query: 327 DRIRLGIKNSRRISSVVD 344
            + R+ ++  +++   +D
Sbjct: 420 -QPRVLLEAIKKLEFELD 436


>gi|153212038|ref|ZP_01947855.1| integrase [Vibrio cholerae 1587]
 gi|124116834|gb|EAY35654.1| integrase [Vibrio cholerae 1587]
          Length = 412

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 45/318 (14%), Positives = 98/318 (30%), Gaps = 54/318 (16%)

Query: 55  TPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD-YRK 113
              ++      KK  T+K L   +        +   +  +++    Q+     +     +
Sbjct: 65  PESKKANQYSDKKDITIKELFDRWL-DLKVIEVTPATIKNYQQRVKQVYWHLPETTLVSE 123

Query: 114 ITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCL--SVERPKRKTE 169
           +T + +    +    T  PS+A  ++ +++ +F +A+   Y   +P L   ++  K +  
Sbjct: 124 VTQEKLLELRKRFTETCSPSTANTYMRTLKGIFSFAINSGY--SDPALLNGIKELKTQKR 181

Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229
             +P ++E+ Q+      +  Q    +   +Y+GLR  +      + +     +I  ++ 
Sbjct: 182 KPQPLSEEEFQRVIEHC-QHEQDANFWTVAVYTGLRHGELMALAWEDIDLENGTITVRRN 240

Query: 230 --------------GTIITVELPDGFMKLLA------MTPIGKETFFINNDKQ------- 262
                         G      L      L A      M P  +         +       
Sbjct: 241 LTLEGRFKLPKTISGERTVNLLNPALAALKAQMKWTFMLPELEIDVLQREYGKLQRQFIR 300

Query: 263 --------------KMNATQFSIWFK--AKATKAGVNKS-AHGVRKFSATISADAGATAH 305
                                SIW K      +A +     +  R   A     AGA   
Sbjct: 301 PVFSPSVTARYEVDNRYYHHVSIWEKWNMLCKRAKLTYRKPYQTRHTYACWMLSAGANPT 360

Query: 306 ELMATYGWKTVDQA-ETY 322
            +    G  +  +  +TY
Sbjct: 361 FIAKQMGHSSAKEVYQTY 378


>gi|331084257|ref|ZP_08333362.1| hypothetical protein HMPREF0992_02286 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330401792|gb|EGG81369.1| hypothetical protein HMPREF0992_02286 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 363

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 51/313 (16%), Positives = 101/313 (32%), Gaps = 45/313 (14%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR-- 126
           + +     Y        L  N+ ++ E     +I+   G     +I+TK I +       
Sbjct: 57  SFEAFTELYINDVK-NRLKENTWLTKEHIIRTKILPYFGKLKISEISTKEIITWQNEMLA 115

Query: 127 ----KHTPSSAIQFLTS---MRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKED 178
               K  P S     T    +  +F  AVR   +  NP   V    + + + +  WTKE+
Sbjct: 116 YRDEKKKPYSQTYLKTLHNQLSAIFNHAVRYYELRSNPAAKVGNMGREEHKEMLFWTKEE 175

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK---------- 228
            ++F     +      AFE L + G+R  +           +  ++   K          
Sbjct: 176 YKKFSFEMMDKPVSFYAFEMLYWCGIREGELLALTPADFNFDKETVTINKSYQRLKGQDV 235

Query: 229 ------TGTIITVELPDGFMK-------LLAMTPIGKETFFINNDKQKMNATQFSIWFKA 275
                   +  T+++P    +       +L         F +         +        
Sbjct: 236 ITSPKTKKSNRTIKMPKFLCEEMKEYLGMLYGLKKKDRIFTVTK-------SYLHHEMDR 288

Query: 276 KATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIK 334
            A  AGV +   H +R    ++  D G +A  +    G +++D    Y       +  I+
Sbjct: 289 GAKAAGVKRIRIHDLRHSHISLLIDMGFSAVAIADRVGHESIDITYQYAHLFPSKQ--IE 346

Query: 335 NSRRISSVVDSDD 347
            + ++  +   D 
Sbjct: 347 MAEKLDDLGKGDF 359


>gi|307129611|ref|YP_003881627.1| Phage integrase [Dickeya dadantii 3937]
 gi|306527140|gb|ADM97070.1| Phage integrase [Dickeya dadantii 3937]
          Length = 363

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 42/323 (13%), Positives = 91/323 (28%), Gaps = 45/323 (13%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87
             G+R+R           A+       +  + ++   +    +L+ +I        W SL
Sbjct: 20  REGKRVR-KQFATKGEALAFERFTMEESENKPWLG-EKADNRSLREIIDL------WFSL 71

Query: 88  AVNSRISFESY---FDQIIRKSGDFDYRKITTKHIRSGVESRKH--------------TP 130
              +    +      D I    G+   R+++        E R                 P
Sbjct: 72  YGRTLADPKRMMAKLDIICTGLGNPKARELSAADFAHYRELRLAGQMTDSSGIPLAVVKP 131

Query: 131 SSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            +      ++  +F    +   + A NP   +   K   + +      ++++     +E 
Sbjct: 132 RTVNLEQRNLSAVFGTLKKLGHWDAPNPLSGLPTFKIAQQELAFLAPNEIKRVLDACAES 191

Query: 190 SQPRLAF--EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
           + P L    +  L +G R S++     Q +     +    K     TV +       +  
Sbjct: 192 ANPHLLLVTKICLATGARWSEAEGLSGQQVTPYRITYTRTKGKKNRTVPISRELYDEIPR 251

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV----NKSAHGVRKFSATISADAGAT 303
                         +  +       F+    + G+     +  H +R   A+     G  
Sbjct: 252 -----------KSGKLFSP--CRKAFERAINRTGIQLPDGQCTHVLRHTFASHFMMNGGN 298

Query: 304 AHELMATYGWKTVDQAETYTKGA 326
              L    G   +     Y   A
Sbjct: 299 ILVLRDILGHADIKMTMIYAHFA 321


>gi|295104559|emb|CBL02103.1| Site-specific recombinase XerD [Faecalibacterium prausnitzii SL3/3]
          Length = 391

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 43/279 (15%), Positives = 89/279 (31%), Gaps = 47/279 (16%)

Query: 91  SRISFESYFDQII------RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLF 144
           +  S++   +++I      R     D +    +   +    R    +S I +  ++    
Sbjct: 91  TYASYQGMVERVIVPYFRKRNIKLVDLKATDLQDFYTKQLER-VKANSVIHYHANIHKAL 149

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGL 204
           K+AV+ + +  NP   VERPK+       ++ +++    +  +EG++  +      + GL
Sbjct: 150 KYAVKIDLIPTNPADKVERPKKNEFKGSYYSADEIHAL-TEIAEGTKLEIPVLLASFYGL 208

Query: 205 RCSDSCRAGVQ--HLQNNIFSIK------------------TQKTGTII-TVELPDGFMK 243
           R S+           + N   IK                    KT + + T+ L      
Sbjct: 209 RRSEVLGLKWDAIDFEANTLEIKHIVTQASIDGKKVLVQADRAKTKSSLRTLPLVPPIRD 268

Query: 244 LLAMTPIGKETF----------------FINNDKQKMNATQFSIWFKAKATKAGV-NKSA 286
            L M    ++T+                 ++     +     S  F     K G+     
Sbjct: 269 RLLMLKGQQDTYRRLCGKSYNREYLGYLCVDEIGNIIRPNYVSEQFPKLLEKNGLRPIRF 328

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTK 324
           H +R   A++    G    ++    G          Y  
Sbjct: 329 HDLRHSCASLLLANGVPMKQIQEWLGHSDFSTTANIYAH 367


>gi|256957171|ref|ZP_05561342.1| integrase/recombinase [Enterococcus faecalis DS5]
 gi|256947667|gb|EEU64299.1| integrase/recombinase [Enterococcus faecalis DS5]
          Length = 290

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/273 (12%), Positives = 85/273 (31%), Gaps = 31/273 (11%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF-LTSMRVLFKW 146
              +   ++ Y +  I          IT   I   +E+     +S  +    ++  +   
Sbjct: 16  RARTINDYQKYMNNFIEVCNIVYISDITIDSIYEWLETMGSVQNSTKRIRYKALSAVLNR 75

Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLAFEFLLYS 202
                ++       V + K   +     T+ED+ +             +   A   +  +
Sbjct: 76  FFENGWIETK-FWRVIKIKVDEKVKEAATQEDIDRLLRILDLSNYYEFRDACAVLLMFQT 134

Query: 203 GLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGFMKLLAMTP--------- 249
           G+R +   +   +H+       I      K   +  + + D  ++++             
Sbjct: 135 GIRINTLSQLENKHINFERKCLILDGSIMKNHKLSILPISDEVLQMIVTLIKQNNLIRES 194

Query: 250 --IGKETFFINNDKQKMNATQFSIWFKAKATKAG-----VNKSAHGVRKFSATISADAGA 302
             +     FI  +   +  +  S   + +  +        N + HG+R+  AT     GA
Sbjct: 195 KNVENSLIFITYEGTSIQKSDKSNAIRRRLGQYSKDFVIPNINPHGLRRGFATNLLKKGA 254

Query: 303 TAHELMATYGWKTVDQAETY-----TKGADRIR 330
           +   +    G   ++    Y     T+ A+ +R
Sbjct: 255 SVPLISKALGHADLETTSRYLYLDSTEAANELR 287


>gi|197285081|ref|YP_002150953.1| integrase/recombinase [Proteus mirabilis HI4320]
 gi|194682568|emb|CAR42606.1| putative integrase/recombinase [Proteus mirabilis HI4320]
          Length = 330

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 46/330 (13%), Positives = 112/330 (33%), Gaps = 37/330 (11%)

Query: 39  HESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESY 98
            +    P     L    P  +   +      T   L   Y +S      +  SR +  S+
Sbjct: 6   DDQEITPETSLVLAEKQPLLDLNATFTSPTQTNPAL--AYLRSLG----SKRSRQTMGSF 59

Query: 99  FDQIIRKSG-----DFDYRKITTKHIRSGVESRKHT---PSSAIQFLTSMRVLFKWAVRQ 150
              + +  G        +  +   HI++ ++        P++   +L +++ +   A   
Sbjct: 60  LTIVAKMIGFSSIKHCQWGALRRHHIQAIIDMLSDADKAPATINTYLAALKGVALEAWAM 119

Query: 151 EYVAINPCLSVERPKRKTEGI----RPWTKEDMQQFKSFW-----SEGSQPRLAFEFLLY 201
           + +       + + K          R  T  +++           S+G +       LL 
Sbjct: 120 KLMDTESYQHIRQVKSVRGSRLPKGRALTGHEIRALFRCCEKDHSSKGLRDAAILSVLLG 179

Query: 202 SGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMK----LLAMTPIGKETF 255
            GLR S+      +H+  ++  F ++ +     I+    D + +    +  +        
Sbjct: 180 CGLRRSEIVALNYEHIQFRDQAFIVRGKGNKERISYMPEDTWERVQLWIDEIRGAQDGAL 239

Query: 256 FINNDK------QKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELM 308
           F    +      +++         + +  ++G++K + H +R+  A+   D G     + 
Sbjct: 240 FTRIRRFDDVTDERITDQAIYYILETRQQESGIDKFAPHDLRRTFASAMLDNGEDIVTVK 299

Query: 309 ATYGWKTVDQAETY-TKGADRIRLGIKNSR 337
              G  ++   + Y  +G DR+R   ++ R
Sbjct: 300 DAMGHASIMTTQRYDRRGDDRLRKAARHLR 329


>gi|149200435|ref|ZP_01877450.1| phage integrase [Lentisphaera araneosa HTCC2155]
 gi|149200455|ref|ZP_01877470.1| phage integrase [Lentisphaera araneosa HTCC2155]
 gi|149136449|gb|EDM24887.1| phage integrase [Lentisphaera araneosa HTCC2155]
 gi|149136469|gb|EDM24907.1| phage integrase [Lentisphaera araneosa HTCC2155]
          Length = 294

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/273 (12%), Positives = 85/273 (31%), Gaps = 24/273 (8%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           + +      +      + A ++  ++     ++          ++  + ++        T
Sbjct: 4   SFQKYYRAMQLELKLQAKAKSTVDNYLRALRRVNDLIA-SPLDQLKEEELKLYFSELVDT 62

Query: 130 --PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              S+      ++   +++ +++E+      L + R  R        ++++     S   
Sbjct: 63  YSWSTVKMDRCALSFFYQYVLKREWKW----LEIVRIPRVKSLPDILSQDETLLILSHLE 118

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPD-GFMKL 244
           + ++ R     +   GLR S+  R     +        ++  K      V LP   +  L
Sbjct: 119 K-ARYRTCLTAIYSMGLRISEGVRIQTGDICKDRMRLHVRNSKGYKDRLVPLPQVTYQML 177

Query: 245 LAMTPIGKETFFI-----------NNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRK 291
                I +    +           +     M+       FKA    +G+ K  S H +R 
Sbjct: 178 RDYWVIHRNPLLLFPRYAGKSRSNSKTTLHMDKGGVQSAFKAALADSGLAKQVSVHSLRH 237

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK 324
             AT   +AG     +    G  +      Y+ 
Sbjct: 238 SYATHLVEAGVNLRVIQEILGHSSPATTAIYSH 270


>gi|220927526|ref|YP_002504435.1| integrase family protein [Clostridium cellulolyticum H10]
 gi|219997854|gb|ACL74455.1| integrase family protein [Clostridium cellulolyticum H10]
          Length = 385

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/194 (17%), Positives = 64/194 (32%), Gaps = 29/194 (14%)

Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217
              V R      G R +T +++  F    + G++ +L F+ L  +G+R  +     V   
Sbjct: 168 TSQVVRKYSNRTGKRLFT-DEVDIFYKGLT-GTRNKLIFDILYETGMRIGELLSLKVNDY 225

Query: 218 QN-------NIFSI----------KTQKTGTIITVELPDGFMKL------LAMTPIGKET 254
                        I          + QKTG+   V       ++      +      +E 
Sbjct: 226 SEVDPWNLFGYIYIIYDEENDDQNRQQKTGSRTLVTTMKLLGRIEEYITEIRPYIKEQEY 285

Query: 255 FFI----NNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMAT 310
            F+        Q ++ +     F     K G+  + H +R    T  ++ G     L   
Sbjct: 286 IFVAESGKTKGQPLSRSLIEKVFSECTEKTGIKCTPHMLRHTHLTELSEFGFDEIFLKGR 345

Query: 311 YGWKTVDQAETYTK 324
            G +++   E YT 
Sbjct: 346 AGHRSIHTTEKYTH 359


>gi|39997217|ref|NP_953168.1| integrative genetic element Gsu56, integrase [Geobacter
           sulfurreducens PCA]
 gi|39984107|gb|AAR35495.1| integrative genetic element Gsu56, integrase [Geobacter
           sulfurreducens PCA]
          Length = 453

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 54/295 (18%), Positives = 99/295 (33%), Gaps = 43/295 (14%)

Query: 93  ISFESYFDQIIRKS----GDFDYRKITTKHIRSGVESRKHT-PSSAIQFLTSMRVLFKWA 147
              E+    I        G  +   +  KH  S +E      P SA   +   R +FK+A
Sbjct: 155 RWRETILSAIKTHIIPGIGKMEISSVRHKHAVSLIEQIASKVPGSARNVMKFGRQMFKYA 214

Query: 148 VRQEYVAINP----CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG---SQPRLAFEFLL 200
            RQE+  I P      SV +   KT+       +++ +     S+G   ++ + A + +L
Sbjct: 215 CRQEWAEIQPFQEITASVPKIAPKTDDRH-LDDDEIVKAWKEISKGPSSTEVKRALKLIL 273

Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQ---KTGTIITVELPDGFMKLLAMTPIGKETFFI 257
            +  R  +  +     +++  ++I  +   K      V L D  ++L+     GK   F 
Sbjct: 274 VTAQRPGEVAQIHRDQIKDRWWTIPAEVAGKNEREHRVYLTDTALELIGQ---GKGYIFS 330

Query: 258 NNDKQ--KMNATQFSIWF----------------KAKATKA---GVN-KSAHGVRKFSAT 295
           +   +   ++    S                   K KA K    G+   S H +R+ + T
Sbjct: 331 SGRGKRGHISENTLSQAINRGYLDEDVVKVVGNRKIKARKEPYFGMKPWSPHDLRRTART 390

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGA--DRIRLGIKNSRRISSVVDSDDP 348
             A  G T                  Y K    +  +  +     +   + S  P
Sbjct: 391 NMARVGITDEVGEEVINHIKPGIVGVYNKYRYDNEKKDALLKWEALLLNILSPKP 445


>gi|323190945|gb|EFZ76212.1| integrase [Escherichia coli RN587/1]
          Length = 346

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/207 (15%), Positives = 61/207 (29%), Gaps = 19/207 (9%)

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           K +P +          +F    R   + A NP  +V + +     +   T E++ +    
Sbjct: 130 KVSPKTMNLEHAYFLAMFNELKRIGEWSAPNPLENVRQYRTDETEMAFLTTEEIDRLLLE 189

Query: 186 WSEGSQPRLAF--EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
                   L    +  L +G R +++       +     +    K     T+ L D  + 
Sbjct: 190 CKRSKVKYLELVVKICLATGARWNEAATLKSSQIAGGKVTFVKTKGKRNRTIPLDDELLS 249

Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA----HGVRKFSATISAD 299
            L  T            K  +        F++   +AG+   +    H +R   A+    
Sbjct: 250 ELPET------------KGALFPKPCYNAFRSALERAGIELPSGQLTHVLRHTFASHFMM 297

Query: 300 AGATAHELMATYGWKTVDQAETYTKGA 326
            G     L    G   +     Y   A
Sbjct: 298 NGGNILVLQKILGHADITMTMRYAHFA 324


>gi|262381071|ref|ZP_06074209.1| integrase [Bacteroides sp. 2_1_33B]
 gi|262296248|gb|EEY84178.1| integrase [Bacteroides sp. 2_1_33B]
          Length = 310

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 44/296 (14%), Positives = 97/296 (32%), Gaps = 39/296 (13%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVES 125
           ++  +S+ R+   +     +S  S++   +  I+ SG       D  K       + +  
Sbjct: 10  VRRYMSQLREEKRY-----SSAKSYQDALNSFIKYSGTENISYSDINKANLHRYEAYLLE 64

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINP------CLSVERPKRKT---EGIRPWTK 176
                ++   ++  +R ++  AV        P         VE  ++K+   E       
Sbjct: 65  NDCMRNTVSTYIRRLRCIYNKAVENGDAEYIPGLFQGVFTGVESKRKKSLSLENQHKLMT 124

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
             ++             +      Y+G+   D      ++++N I     QKTGT + +E
Sbjct: 125 VKVES----EVLRETQLVVCLLFQYAGMSFVDFAHLKERNIKNGILDYNRQKTGTPMRLE 180

Query: 237 LPD----GFMKLLAMTPIGKETFFINNDKQKMNAT----------QFSIWFKAKATKAGV 282
           + D       +L+          F      K              +F+   KA    AG+
Sbjct: 181 ILDTAELMRKELMGDKKPASGYLFPFLSGTKTGYEAYLEYNAALSRFNRNLKALKKAAGI 240

Query: 283 --NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
             + +++ +R   A    +       +    G K++   + Y +     ++   NS
Sbjct: 241 VSDVTSYTIRHSFAMALKEQNVPIEMISELLGHKSIKTTQIYLRSFSLEKMTEVNS 296


>gi|260664378|ref|ZP_05865231.1| Lj928 prophage integrase [Lactobacillus jensenii SJ-7A-US]
 gi|260562264|gb|EEX28233.1| Lj928 prophage integrase [Lactobacillus jensenii SJ-7A-US]
          Length = 372

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 47/297 (15%), Positives = 99/297 (33%), Gaps = 31/297 (10%)

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
           + K   L  L   +  +         +  + + Y + + +  G+    KI    ++  V 
Sbjct: 64  KAKQIKLDDLFQIWFDTYKLQVKESTAEKTRQVYINHLHKYYGNTYVDKIQQASLQKFVS 123

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK-----EDM 179
           +      +     + +  +FK A+   Y++ NP  +V  PK+     R  T+      ++
Sbjct: 124 TLPKELVNFRDVTSLLNRIFKLAISLNYISNNPLKNVIIPKKTARKRRDTTQNFYDKNEL 183

Query: 180 QQFK-SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT--------- 229
           + F  +  S   +  + F  L  +G+R  ++     + +  +   I   KT         
Sbjct: 184 KSFLNAAQSTNYKYYVYFLLLASTGIRKGEALALTWKDINFSSNYININKTLAYGLHGKY 243

Query: 230 --------GTIITVELPDGFMKLL---AMTPIGKETFFINNDKQKMNATQFSIWFK-AKA 277
                    +   V L       L          +  F   +   +  T+   W K    
Sbjct: 244 VVQPPKTAHSKRKVPLSKNLKSELLNYQKQDTKNKYLFHTENGDYLRLTKPQQWLKIIYR 303

Query: 278 TKAGVNK-SAHGVRKFSATISADAGATAH--ELMATYGWKTVDQA-ETYTKGADRIR 330
               + K + HG R   A+I  ++  +    ++ A  G +TV      YT    + +
Sbjct: 304 KNPELKKITIHGFRHTFASILIESNPSIKPTDVQAILGHETVQMTLNIYTHATQKGK 360


>gi|261377411|ref|YP_003208350.1| putative integrase [uncultured bacterium]
 gi|257735399|emb|CAZ72214.1| putative integrase [uncultured bacterium]
          Length = 312

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 36/272 (13%), Positives = 90/272 (33%), Gaps = 26/272 (9%)

Query: 84  WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HTPSSAIQFLTSMR 141
           +   +  +  ++     +      +    +   + I +  +  K  H P++   +L +++
Sbjct: 29  YIDASPKTIETYSKAIRRFFVYLMENGITQPQREDIVAYRDYLKLEHKPTTVQGYLAAVK 88

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTE-GIRPWTKEDMQQFKSFWS----EGSQPRLAF 196
           + F+W  ++     N    V+  K  TE      T + + +          +G +     
Sbjct: 89  LFFQWTAQEGLYP-NVADRVKGAKLDTEHKKDYLTTKQVARLLGAIDRSTLKGLRDYAML 147

Query: 197 EFLLYSGLRCSDSCRAGVQHLQ---NNIFSIKTQKTGTI------ITVELPDGFMKLLAM 247
             ++ +GLR     RA +  ++   + +      K          +   + +     L  
Sbjct: 148 SVMVTTGLREISIVRADIGDIRTAGDAVALFYQGKGHEEKADYVKLAEPVEEAVRAYLKA 207

Query: 248 TPIGKE------TFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISA 298
                       +    N+ ++M     S   K +    G+     + H +R  +AT++ 
Sbjct: 208 RGGADPKAPLFSSIANRNNGERMTTRSVSRVAKERLIAVGLESDRLTGHSMRHTAATLNL 267

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIR 330
             G T  E     G   ++    Y+   +R +
Sbjct: 268 LNGGTVEETRQLLGHTNINTTLIYSHALERAK 299


>gi|325982077|ref|YP_004294479.1| hypothetical protein NAL212_1430 [Nitrosomonas sp. AL212]
 gi|325531596|gb|ADZ26317.1| Protein of unknown function DUF3596 [Nitrosomonas sp. AL212]
          Length = 361

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 54/293 (18%), Positives = 103/293 (35%), Gaps = 27/293 (9%)

Query: 55  TPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFES-YFDQIIRKSGDFDYRK 113
           + K +     R    T+K  +  + +      L +++   + S  +  +I   G+    +
Sbjct: 67  SKKAKEFRKNRPDLYTIKEALISWLQRNQ-AKLQLSTLQDYNSAIYHHLIPTFGNLTISE 125

Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
           +T   ++  +     +       LT +R +F+     E +  NP   V+    KT    P
Sbjct: 126 LTASKVKEWLSELPCSNKRKSNILTPLRQMFEELYLDEIIDKNPLSRVKNLPNKTREPEP 185

Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQ---- 227
           +T+E++ +  +  +   Q +   +F  YSGLR S+      +++  + N   IK      
Sbjct: 186 FTQEEIIKILNELT--GQAKNLIQFAFYSGLRTSELIALCWKNVEFEQNRIFIKQAHVRG 243

Query: 228 -------KTGTIITVELPDGFMKLL----AMTPIGKETFFIN-NDKQKMNATQ--FSIWF 273
                  K+G    V L     + L    A T    +  F N   KQ     Q      +
Sbjct: 244 QLKDTKTKSGKR-EVTLQPQAKEALLNQQAFTGKQNQIVFHNPKTKQPWKNDQPIRKNVW 302

Query: 274 KAKATKAGVNKS-AHGVRKFSATISADAGATAHELMATYGWKTVDQ-AETYTK 324
                KAG+     +  R   A++    G     +    G K      + Y +
Sbjct: 303 IPALKKAGIKYRNPYQTRHTFASMLLSRGEKLLWVAQQMGHKDWGMIIKVYGR 355


>gi|255692229|ref|ZP_05415904.1| tyrosine type site-specific recombinase [Bacteroides finegoldii DSM
           17565]
 gi|260622093|gb|EEX44964.1| tyrosine type site-specific recombinase [Bacteroides finegoldii DSM
           17565]
          Length = 404

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/228 (17%), Positives = 82/228 (35%), Gaps = 18/228 (7%)

Query: 112 RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
           R    +     +     + + A+++L  ++ +   AV    +A +P  + +  +R+    
Sbjct: 167 RDFIEEFRIWLLSEHGLSHNGAVKYLALLKKVVNRAVANNKIAFSPFAAYK-LERQEVSP 225

Query: 172 RPWTKEDMQQ---FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----IFS 223
               ++++++   F S      + R  F F  Y+GL   D      +HL+ +        
Sbjct: 226 DFLNEDELRRIINFNSPLPRLERTRDMFLFACYTGLSYVDVKTLRAEHLERDNEGRIWIK 285

Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
            K  KTG +  + L      L+     G +T          +A   +++ K  A    ++
Sbjct: 286 KKRIKTGVLARIPLLPSAKMLIDKY-SGGDTLIPI-----YSAKDINLYLKDIAILCHID 339

Query: 284 KSA--HGVRKFSA-TISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           K    H  R   A T++     +   +    G       E Y +  D+
Sbjct: 340 KRITYHTARHTFASTVTLANNISLIAVSKMLGHSNTRMTEHYARLVDK 387


>gi|198243350|ref|YP_002214933.1| integrase [Salmonella enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|197937866|gb|ACH75199.1| integrase [Salmonella enterica subsp. enterica serovar Dublin str.
           CT_02021853]
          Length = 446

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 52/346 (15%), Positives = 107/346 (30%), Gaps = 80/346 (23%)

Query: 75  ISEYRKSAHWGSL-----AVNSRISFESYFDQIIRKSGD--------------------F 109
           I+    +  W  L     + N+   +ES    ++   G+                     
Sbjct: 98  ITVLELTERWSELKRMEISSNTMSRYESIIKNMLPLIGENKMVSAVTTEDLLYVRKELLT 157

Query: 110 DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
            ++ +   H R+ V+ RK   S+   ++  M  +F++     Y   NP   + R K+   
Sbjct: 158 GFQVMKKDH-RTQVKGRKS--STVNNYMMLMAEIFQFGTDNGYAKENPFSGINRLKKAKG 214

Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229
              P T ++  +F        Q R  +   +Y+G+R  + C    + +  +  +I  ++ 
Sbjct: 215 EPDPLTTDEFIRFIQACG-HQQMRNLWSLAVYTGMRHGELCGLAWEDIDLHAGTIIVKRN 273

Query: 230 --------------GTIITV----ELPDGFMKLLAMTPIGKE------------------ 253
                         GT   +       D       +T +G++                  
Sbjct: 274 LTQTDEFTLPKTNAGTDRVIYLIQPAIDALRNQAQLTRLGRQFEVEVKLREYGQSVIQPC 333

Query: 254 TFFIN--------NDKQKMNATQFSIWFKAKATKAGVNKS-AHGVRKFSATISADAGATA 304
           TF  +                   +  +     +AG+    A+  R   A  S  AGA  
Sbjct: 334 TFVFSPQCVKRGPRTGYHYAVNSINKIWAPIIKRAGIRYRNAYQSRHTYACWSLSAGANP 393

Query: 305 HELMATYGWKTVDQA-ETYT-----KGADRIRLGIKNSRRISSVVD 344
           + +    G        + Y      K A+++ L  +   R +  + 
Sbjct: 394 NFIATQMGHTDAQMVYKVYGKWMSEKSAEQVSLLNQALSRYAPSLP 439


>gi|150007077|ref|YP_001301820.1| integrase [Parabacteroides distasonis ATCC 8503]
 gi|256840234|ref|ZP_05545742.1| integrase [Parabacteroides sp. D13]
 gi|298377497|ref|ZP_06987449.1| integrase [Bacteroides sp. 3_1_19]
 gi|301311260|ref|ZP_07217188.1| integrase [Bacteroides sp. 20_3]
 gi|149935501|gb|ABR42198.1| integrase [Parabacteroides distasonis ATCC 8503]
 gi|256737506|gb|EEU50832.1| integrase [Parabacteroides sp. D13]
 gi|298265516|gb|EFI07177.1| integrase [Bacteroides sp. 3_1_19]
 gi|300830834|gb|EFK61476.1| integrase [Bacteroides sp. 20_3]
          Length = 310

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 44/296 (14%), Positives = 97/296 (32%), Gaps = 39/296 (13%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVES 125
           ++  +S+ R+   +     +S  S++   +  I+ SG       D  K       + +  
Sbjct: 10  VRRYMSQLREEKRY-----SSAKSYQDALNSFIKYSGTENISYSDINKANLHRYEAYLLE 64

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINP------CLSVERPKRKT---EGIRPWTK 176
                ++   ++  +R ++  AV        P         VE  ++K+   E       
Sbjct: 65  NDCMRNTVSTYIRRLRCIYNKAVENGDAEYIPGLFQGVFTGVESKRKKSLSLENQHKLMT 124

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
             ++             +      Y+G+   D      ++++N I     QKTGT + +E
Sbjct: 125 VKVES----EVLRETQLVVCLLFQYAGMSFVDFAHLKERNIKNGILDYNRQKTGTPMRLE 180

Query: 237 LPD----GFMKLLAMTPIGKETFFINNDKQKMNAT----------QFSIWFKAKATKAGV 282
           + D       +L+          F      K              +F+   KA    AG+
Sbjct: 181 ILDTAELMRKELMGDKKPASGYLFPFLSGTKTGYEAYLEYNAALSRFNRNLKALKKAAGI 240

Query: 283 --NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
             + +++ +R   A    +       +    G K++   + Y +     ++   NS
Sbjct: 241 ASDVTSYTIRHSFAMALKEQNVPIEMISELLGHKSIKTTQIYLRSFSLEKMTEVNS 296


>gi|238917697|ref|YP_002931214.1| hypothetical protein EUBELI_01777 [Eubacterium eligens ATCC 27750]
 gi|238873057|gb|ACR72767.1| Hypothetical protein EUBELI_01777 [Eubacterium eligens ATCC 27750]
          Length = 364

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 52/290 (17%), Positives = 95/290 (32%), Gaps = 43/290 (14%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVES--- 125
           + K  +  Y        +  N+ ++ +   + +I+   G      I T ++         
Sbjct: 57  SFKSFVDIYLTDLE-PKIKRNTFLTKKHIIETKILPYFGKRKLDDIRTSNVIQWQNEIMK 115

Query: 126 -RKH-----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV-ERPKRKTEGIRPWTKED 178
            +K      +P+        +  +   AV    +  N         K + + +  WT+E+
Sbjct: 116 LKKDNGELFSPTYLKTIHNQLSAILNHAVNMYGLKDNVARKAGTMGKEENKEMEFWTQEE 175

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---------------NNIFS 223
            Q F     +      AFE L ++G+R  +     +                        
Sbjct: 176 FQAFLECVVDKPISYYAFEILYWTGIREGELLALTLGDFNFEKKTLRINKSYQRLEGKDV 235

Query: 224 IKTQKT-GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW-------FKA 275
           I  QKT  +  T+ +PD          I  E F  N    KM+   F+I           
Sbjct: 236 ITDQKTPKSNRTIAMPDFLT-------IEMEDFIKNIYGIKMDDRIFTISKSYLHHEMDR 288

Query: 276 KATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            A  AGV +   HG+R    ++  + G +A  +    G ++VD    Y  
Sbjct: 289 GAKLAGVKRIRIHGLRHSHISLLINLGFSALTIGERVGHESVDITYHYAH 338


>gi|156974288|ref|YP_001445195.1| integrase [Vibrio harveyi ATCC BAA-1116]
 gi|156525882|gb|ABU70968.1| hypothetical protein VIBHAR_02003 [Vibrio harveyi ATCC BAA-1116]
          Length = 318

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/208 (16%), Positives = 64/208 (30%), Gaps = 52/208 (25%)

Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225
            + +     T++++++F        + +L  + L  SGLR  +  R  +Q +  +  +++
Sbjct: 98  TEKKLPVVLTRDEVRRFVQHIDP--KYKLHIQLLYGSGLRIMECLRLRIQDIDYDYGALR 155

Query: 226 --TQKTGTIITVELPDGFMKLLAMT----------------------------------- 248
               K G   TV L     + L                                      
Sbjct: 156 VWQGKGGKNRTVTLAKELHEPLKAQVNLTRDYYQKDRHMGGYAGVYISDGLRRKYPGAEL 215

Query: 249 --------PIGKETFFINN---DKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSAT 295
                   P  K +   +     +  +N +      K  A  AG+ KS   H +R   AT
Sbjct: 216 DFNWHFLFPSTKLSIDADTGEFRRHHVNESAIQRAVKRAAKDAGIEKSVTCHTLRHSFAT 275

Query: 296 ISADAGATAHELMATYGWKTVDQAETYT 323
              + GA    +    G   V   + YT
Sbjct: 276 HLLETGADIRTVQEQLGHTDVKTTQIYT 303


>gi|324018392|gb|EGB87611.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 117-3]
          Length = 391

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 54/286 (18%), Positives = 99/286 (34%), Gaps = 33/286 (11%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           T+K  + EY +      L+ ++   ++     +          ++T   +++ ++S+K T
Sbjct: 91  TVKMYLDEYLEICETRKLSPSTIGGYKKCRSALASLH-ICPASELTPAILKAWIQSQKTT 149

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR--------PWTKEDMQQ 181
             +    L+ +R     AV    + INP   V   + +++           P +  ++  
Sbjct: 150 LKTIRNQLSFLRSALDEAVTDGVLQINPVSLVTASRYQSDKSEAESSYVVDPLSPAEVDA 209

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-------------NNIFSIKTQK 228
             +         L F F +++GLR S+ C    + +                +      K
Sbjct: 210 LLAAAGNKQWENL-FRFAIHTGLRSSELCALRWRDIDFVGKTAHVQNASVVGVIKGTKTK 268

Query: 229 TGTIITVELPDGFMKLL----AMTPIGKETFFINNDKQKMNATQFSIWFKAKA---TKAG 281
            GT   VEL +  M  L      T +   T F +    K  A+  +I  KA      KAG
Sbjct: 269 AGTR-KVELNEEAMAALTNQKPFTFMKDATVFEDPKTNKPWASADAIRKKAWVPTLRKAG 327

Query: 282 VNKS-AHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKG 325
           +     +  R   AT     G     L A  G K  +     Y + 
Sbjct: 328 IRYRNPYQTRHTFATSHISRGTNLFWLAAQMGHKGPEMLFRHYGRY 373


>gi|298292762|ref|YP_003694701.1| integrase family protein [Starkeya novella DSM 506]
 gi|296929273|gb|ADH90082.1| integrase family protein [Starkeya novella DSM 506]
          Length = 334

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 42/298 (14%), Positives = 85/298 (28%), Gaps = 58/298 (19%)

Query: 89  VNSRISFESYFDQIIRKSGDFDYRKITT--KHIRSGVESRKHTP---SSAIQFLTSMRVL 143
            N+  ++    D       D     +    +HIR+ + +        +S  + L+++R  
Sbjct: 21  ANTLAAYGRDLDDYEAFLVDEGVGPLEAGTEHIRAWLAALSARGLAGASVARKLSAVRQF 80

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA-------- 195
            ++   + Y   +P   +E P+R     +  T +++          +    A        
Sbjct: 81  HRFLYVETYRGDDPAAVLEGPRRGRPLPKVLTLDEVTTLIETAHARAAAPCAAPAAGALP 140

Query: 196 ----------------------FEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGT 231
                                  E L  +GLR S+           + +   ++  K   
Sbjct: 141 DRAGDAAVRAGEAARRARVACFVELLYATGLRVSELAALPASAANAKGDAIIVR-GKGNK 199

Query: 232 IITVELPDGFMKLLAM----------------TPIGKETFFINND-KQKMNATQFSIWFK 274
              V L +     +                   P      F +      +   Q ++  K
Sbjct: 200 ERLVPLGEAAKGAMRAYRVALGQAATVKGAKARPEDGRWLFPSAAASGHITRQQVALDLK 259

Query: 275 AKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             A  AG++    S H +R   A+     GA    +    G   +   + YT   D  
Sbjct: 260 DLALAAGLDPSKLSPHVLRHAFASHLLAHGADLRIVQTLLGHSDISTTQIYTHVLDER 317


>gi|291530998|emb|CBK96583.1| Site-specific recombinase XerD [Eubacterium siraeum 70/3]
 gi|295104190|emb|CBL01734.1| Site-specific recombinase XerD [Faecalibacterium prausnitzii SL3/3]
 gi|295115223|emb|CBL36070.1| Site-specific recombinase XerD [butyrate-producing bacterium SM4/1]
          Length = 403

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 52/385 (13%), Positives = 103/385 (26%), Gaps = 73/385 (18%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKGH--GRRIRLPYPHESTFIPAYMSALTGSTPKREYI 61
             ++P +     T  G   Y  R     G+ + L            + A         + 
Sbjct: 5   KTQIPKY--GTITLKGIQYYRTRITDADGKELSLYAATCEELYEKQLEARKKVEEIIFHR 62

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIR 120
             P       KWL+ +   SA    ++ ++   +     + II+  G+    ++T   IR
Sbjct: 63  QHPTVAEYGEKWLLMQ---SAK---VSASTLRGYTRDMTNYIIKPLGEMYMEEVTADDIR 116

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGI-RPWTKED 178
             +             +  +     +A  + + +  NPC  +     K        T + 
Sbjct: 117 LALVPLSKKSEGLYNKVNMLLKCIFYAAERNQILEHNPCAGISGKGGKPTKKKEALTDQQ 176

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQ------- 227
           +         G  P L     LYSGLR  +        +         S++         
Sbjct: 177 VAVLLDTVK-GLPPYLFIMLGLYSGLRREEILALQWDCVFLDEDTPYLSVRRAWRTEHNR 235

Query: 228 -------KTG-TIITVELPDGFMKLLAMTPIG--KETFFINNDKQKMNATQFSIWFKAKA 277
                  KT      + +P   +  L  T      +    ++  + + A+QF   ++   
Sbjct: 236 PVVSTVLKTPAAKRDIPIPKCLVDCLRETKENSISDYVIADSKGEPLAASQFQRVWQYVV 295

Query: 278 TK-------------------------------------AGVNKSAHGVRKFSATISADA 300
            +                                        + + H +R    T    A
Sbjct: 296 VRSTKPRNYYKYVNGESIKYTVTPTLGMTQKNQPQIKYTLDFDVTPHQLRHTYITNLLYA 355

Query: 301 GATAHELMATYGWKTVDQA-ETYTK 324
           G     +    G +      + Y K
Sbjct: 356 GVDPKTVQYLAGHENSKTTMDIYAK 380


>gi|300948717|ref|ZP_07162793.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 116-1]
 gi|300956208|ref|ZP_07168521.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 175-1]
 gi|300316962|gb|EFJ66746.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 175-1]
 gi|300451782|gb|EFK15402.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 116-1]
          Length = 339

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 53/304 (17%), Positives = 101/304 (33%), Gaps = 33/304 (10%)

Query: 59  EYINSPRKKPTTLKWLISEYRKSAHWG----SLAVNSRISFESYFDQIIRKSGDFDYRKI 114
           E +++ +++   LK  +  Y K          +A  +          ++ + G+   +++
Sbjct: 40  ESLSATKRRGIRLKAWVDRYLKIQDTRLKNGDIAATTHKEKTRMAAYLVSRLGNHPLKEL 99

Query: 115 TTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAI--NPCLSVERPKRKTEG 170
             +     ++    K   S+A         ++K A     V    NP  +  +P  K   
Sbjct: 100 EVRDFALILDEWLDKDMVSTARVNRGLWVDIYKEAQHAGEVPPGWNPPEATRKPIPKVTR 159

Query: 171 IRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
            R  T ED Q+  +   E    R A    + +G R  D C      + N    I   KTG
Sbjct: 160 AR-LTMEDWQKIYNATPEKHFIRNAMLLAIVTGQRRDDICHMRFSDVWNEHLHITQGKTG 218

Query: 231 TIITVELPDG-------FMKLLA-MTPIGKETFFINNDK----QKMNATQFSIWFKAKAT 278
             + + L            +++          + I++      + M+    S +F     
Sbjct: 219 MRLALPLTLRCDAIGITLKEVIDGCRDRILSPYLIHSRHQKQPKPMSKDNLSDYFAKARD 278

Query: 279 KAGV-------NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY--TKGADRI 329
            AG+         + H  R  S  +    G     L    G K     + Y  T+G + +
Sbjct: 279 LAGIIPPAGKTPPTFHEQRSLSERLYRAQGIDTKTL---LGHKVQATTDRYNDTRGQEWV 335

Query: 330 RLGI 333
           +L I
Sbjct: 336 KLVI 339


>gi|16759873|ref|NP_455490.1| integrase [Salmonella enterica subsp. enterica serovar Typhi str.
           CT18]
 gi|29142354|ref|NP_805696.1| integrase [Salmonella enterica subsp. enterica serovar Typhi str.
           Ty2]
 gi|25323732|pir||AC0617 integrase [imported] - Salmonella enterica subsp. enterica serovar
           Typhi (strain CT18)
 gi|16502166|emb|CAD05405.1| integrase [Salmonella enterica subsp. enterica serovar Typhi]
 gi|29137984|gb|AAO69545.1| integrase [Salmonella enterica subsp. enterica serovar Typhi str.
           Ty2]
          Length = 446

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 52/346 (15%), Positives = 107/346 (30%), Gaps = 80/346 (23%)

Query: 75  ISEYRKSAHWGSL-----AVNSRISFESYFDQIIRKSGD--------------------F 109
           I+    +  W  L     + N+   +ES    ++   G+                     
Sbjct: 98  ITVLELTERWSELKRMEISSNTMSRYESIIKNMLPLIGENKMVSAVTTEDLLYVRKELLT 157

Query: 110 DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
            ++ +   H R+ V+ RK   S+   ++  M  +F++     Y   NP   + R K+   
Sbjct: 158 GFQVMKKDH-RTQVKGRKS--STVNNYMMLMAEIFQFGTDNGYAKENPFSGINRLKKAKG 214

Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229
              P T ++  +F        Q R  +   +Y+G+R  + C    + +  +  +I  ++ 
Sbjct: 215 EPDPLTTDEFIRFIQACG-HQQMRNLWSLAVYTGMRHGELCGLAWEDIDLHAGTIIVKRN 273

Query: 230 --------------GTIITV----ELPDGFMKLLAMTPIGKE------------------ 253
                         GT   +       D       +T +G++                  
Sbjct: 274 LTQTDEFTLPKTDAGTDRVIYLIQPAIDALRNQAQLTRLGRQFEVEVKLREYGQSVIQPC 333

Query: 254 TFFIN--------NDKQKMNATQFSIWFKAKATKAGVNKS-AHGVRKFSATISADAGATA 304
           TF  +                   +  +     +AG+    A+  R   A  S  AGA  
Sbjct: 334 TFVFSPQCVKRGPRTGYHYAVNSINKIWAPIIKRAGIRYRNAYQSRHTYACWSLSAGANP 393

Query: 305 HELMATYGWKTVDQA-ETYT-----KGADRIRLGIKNSRRISSVVD 344
           + +    G        + Y      K A+++ L  +   R +  + 
Sbjct: 394 NFIATQMGHTDAQMVYKVYGKWMSEKSAEQVSLLNQALSRYAPSLP 439


>gi|167765393|ref|ZP_02437506.1| hypothetical protein BACSTE_03781 [Bacteroides stercoris ATCC
           43183]
 gi|167697021|gb|EDS13600.1| hypothetical protein BACSTE_03781 [Bacteroides stercoris ATCC
           43183]
          Length = 412

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 48/275 (17%), Positives = 95/275 (34%), Gaps = 26/275 (9%)

Query: 71  LKWLISEYRKSAHWGSLAVNSR---ISFESYFDQIIRKSG--DFDYRKITTKHIRSGVES 125
              L+ E R+S     +         ++    + +  K G  D  + ++    I S V  
Sbjct: 116 FAALLEEKRQSVGILIVETTYAHLNRAYHHLKEFLQYKYGVTDIPFTQVDFDFIESYVYY 175

Query: 126 RKH----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
            K     + S+    +  +R +   A+ +  +  +P     RP+R T   +  + +++++
Sbjct: 176 LKINLQFSASTTNNTIKPLRRIVMRALNKGLMYQDPFFGY-RPQRITITRKWLSMDEIER 234

Query: 182 FKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTII 233
                 +       R  F F  ++GL   D       ++           +  QKTGT  
Sbjct: 235 LMQVEMKRESANFIRDMFLFSTFTGLAYVDLKNLRHDNIVRQEDGKQWIVLNRQKTGTTS 294

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKM---NATQFSIWFKAKATKAGVNKSA--HG 288
            + L D  ++L+       +T F     +           I  K  A  A ++K    H 
Sbjct: 295 KIPLLDIPLQLIEKY---WDTAFAGFGGRVFRLCTIENTDIQLKKIAKAAKIDKRLTYHM 351

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
            R   AT+    G     +  T G +++   + Y 
Sbjct: 352 ARHSYATLCLSMGVPIETISQTLGHRSITTTQIYA 386


>gi|190015178|ref|YP_001966799.1| integrase/recombinase [Bacillus cereus]
 gi|190015443|ref|YP_001967123.1| site-specific tyrosine recombinase XerS [Bacillus cereus]
 gi|218848308|ref|YP_002455193.1| integrase/recombinase, phage integrase family [Bacillus cereus
           AH820]
 gi|116584854|gb|ABK00969.1| integrase/recombinase [Bacillus cereus]
 gi|116585124|gb|ABK01233.1| integrase/recombinase [Bacillus cereus]
 gi|218540359|gb|ACK92755.1| integrase/recombinase, phage integrase family [Bacillus cereus
           AH820]
          Length = 361

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 51/327 (15%), Positives = 101/327 (30%), Gaps = 56/327 (17%)

Query: 67  KPTTLKWLISEYRKSAHWG---SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
            P TL   I+EY K  +W     LAV++        D  I             +  +  +
Sbjct: 35  SPATLYAYITEYEKFLNWLVNNRLAVDNGKVVTDICDVPIATLETLPLN--EARSFQRYL 92

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQ-------EYVAINPCLSVERPKRKTEGIRPW-- 174
           +       +  +  ++++ LFK+  +         Y++ N    +E  K K +       
Sbjct: 93  QGAGIETRAINRTFSALKSLFKYLAQNTENEHGENYISRNVMEKIELHKEKVDAAARADD 152

Query: 175 -------TKEDMQ--QFKS-----------------FWSEGSQPRLAFEFLLYSGLRCSD 208
                   K+D+   QF +                 F  +  +       +L +GLR S+
Sbjct: 153 VANMIFNEKDDVAFLQFLANDYGEMLKDISPRKYSFFQRDKERDIAIISLILGTGLRVSE 212

Query: 209 SCRAGVQHLQNNIFSIKTQKTGTI-----ITVELPDGFMKLLAMTPIG------KETFFI 257
                +  +     ++K  + G        T    D   + + + P+       ++  F+
Sbjct: 213 VASLTISSINFRQGTVKVTRKGNKRSSILATRSCLDDVQEYIKVRPLKYNCPENEDLLFV 272

Query: 258 NNDKQKMN---ATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWK 314
            N K K                 +     +S H +R   AT           L    G  
Sbjct: 273 TNYKGKFTQLTVRAIQKLIDKYTSAFDEKRSPHKLRHTYATNHYKENKDLVLLRDQLGHT 332

Query: 315 TVDQAETYTKGADRIRLGIKNSRRISS 341
           +V+    YT   ++ +   +   R+  
Sbjct: 333 SVEVTSIYTNINNKKKR--EAIDRLEK 357


>gi|300071713|gb|ADJ61113.1| phage integrase [Lactococcus lactis subsp. cremoris NZ9000]
          Length = 393

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 44/327 (13%), Positives = 102/327 (31%), Gaps = 51/327 (15%)

Query: 48  MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKS 106
             A+         +   +        L + +  S    ++  N+     ++  + I+   
Sbjct: 48  HQAMNKFIKNGSTVAREKVSFDNFNALATSWFDSYK-LTVKANTIRINSNFLKNYILPAL 106

Query: 107 GDFDYRKITTKHIRSGVESRKHTPSSA-----IQ----------FLTSMRVLFKWAVRQE 151
           G++   KITT  +++ V       ++A      +           L  ++ +  + ++  
Sbjct: 107 GNYKVEKITTVLLQNIVNDWARNANTAEIVNGNREKGKSKDYKLLLNIIKRILDYGMQLG 166

Query: 152 YVAINPCLSVERPKRKT---EGIRPWTKEDMQQFKSFWS------EGSQPRLAFEFLLYS 202
            ++ NP + V  PK KT   + I+ +  +++++F  +           +    ++ LL +
Sbjct: 167 VISDNPAIKVFSPKLKTRTVKKIKYFNNDELKRFLDYLDSLQSTTANIKSTTLYKLLLAT 226

Query: 203 GLRCSDSCRAGVQHLQ----------------NNIFSIKTQKTGTII------TVELPDG 240
           GLR  ++       +                 N I      K    +      T+ +   
Sbjct: 227 GLRICEALALSWSDIDFVNNTVSVSKTLIQYSNEIQDSAKTKESNRLVSVDSETISMLKE 286

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQF--SIWFKAKATKAGVNKSAHGVRKFSATISA 298
           + K      I      + +  QKM   +       +        N   HG R   A++  
Sbjct: 287 WRKHQNYGAISLHDSLVFSYHQKMRTYELERQHLVRHFKKAKVPNIGFHGFRHTHASLLM 346

Query: 299 DAGATAHELMATYGWKTVDQAE-TYTK 324
           +      E+    G          Y+ 
Sbjct: 347 NNDVNPKEIQMRLGHADYSITMNLYSH 373


>gi|213424618|ref|ZP_03357401.1| integrase [Salmonella enterica subsp. enterica serovar Typhi str.
           E02-1180]
          Length = 528

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 52/346 (15%), Positives = 107/346 (30%), Gaps = 80/346 (23%)

Query: 75  ISEYRKSAHWGSL-----AVNSRISFESYFDQIIRKSGD--------------------F 109
           I+    +  W  L     + N+   +ES    ++   G+                     
Sbjct: 180 ITVLELTERWSELKRMEISSNTMSRYESIIKNMLPLIGENKMVSAVTTEDLLYVRKELLT 239

Query: 110 DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
            ++ +   H R+ V+ RK   S+   ++  M  +F++     Y   NP   + R K+   
Sbjct: 240 GFQVMKKDH-RTQVKGRKS--STVNNYMMLMAEIFQFGTDNGYAKENPFSGINRLKKAKG 296

Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229
              P T ++  +F        Q R  +   +Y+G+R  + C    + +  +  +I  ++ 
Sbjct: 297 EPDPLTTDEFIRFIQACG-HQQMRNLWSLAVYTGMRHGELCGLAWEDIDLHAGTIIVKRN 355

Query: 230 --------------GTIITV----ELPDGFMKLLAMTPIGKE------------------ 253
                         GT   +       D       +T +G++                  
Sbjct: 356 LTQTDEFTLPKTDAGTDRVIYLIQPAIDALRNQAQLTRLGRQFEVEVKLREYGQSVIQPC 415

Query: 254 TFFIN--------NDKQKMNATQFSIWFKAKATKAGVNKS-AHGVRKFSATISADAGATA 304
           TF  +                   +  +     +AG+    A+  R   A  S  AGA  
Sbjct: 416 TFVFSPQCVKRGPRTGYHYAVNSINKIWAPIIKRAGIRYRNAYQSRHTYACWSLSAGANP 475

Query: 305 HELMATYGWKTVDQA-ETYT-----KGADRIRLGIKNSRRISSVVD 344
           + +    G        + Y      K A+++ L  +   R +  + 
Sbjct: 476 NFIATQMGHTDAQMVYKVYGKWMSEKSAEQVSLLNQALSRYAPSLP 521


>gi|125624913|ref|YP_001033396.1| phage integrase [Lactococcus lactis subsp. cremoris MG1363]
 gi|124493721|emb|CAL98709.1| phage integrase [Lactococcus lactis subsp. cremoris MG1363]
          Length = 404

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 44/327 (13%), Positives = 102/327 (31%), Gaps = 51/327 (15%)

Query: 48  MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKS 106
             A+         +   +        L + +  S    ++  N+     ++  + I+   
Sbjct: 59  HQAMNKFIKNGSTVAREKVSFDNFNALATSWFDSYK-LTVKANTIRINSNFLKNYILPAL 117

Query: 107 GDFDYRKITTKHIRSGVESRKHTPSSA-----IQ----------FLTSMRVLFKWAVRQE 151
           G++   KITT  +++ V       ++A      +           L  ++ +  + ++  
Sbjct: 118 GNYKVEKITTVLLQNIVNDWARNANTAEIVNGNREKGKSKDYKLLLNIIKRILDYGMQLG 177

Query: 152 YVAINPCLSVERPKRKT---EGIRPWTKEDMQQFKSFWS------EGSQPRLAFEFLLYS 202
            ++ NP + V  PK KT   + I+ +  +++++F  +           +    ++ LL +
Sbjct: 178 VISDNPAIKVFSPKLKTRTVKKIKYFNNDELKRFLDYLDSLQSTTANIKSTTLYKLLLAT 237

Query: 203 GLRCSDSCRAGVQHLQ----------------NNIFSIKTQKTGTII------TVELPDG 240
           GLR  ++       +                 N I      K    +      T+ +   
Sbjct: 238 GLRICEALALSWSDIDFVNNTVSVSKTLIQYSNEIQDSAKTKESNRLVSVDSETISMLKE 297

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQF--SIWFKAKATKAGVNKSAHGVRKFSATISA 298
           + K      I      + +  QKM   +       +        N   HG R   A++  
Sbjct: 298 WRKHQNYGAISLHDSLVFSYHQKMRTYELERQHLVRHFKKAKVPNIGFHGFRHTHASLLM 357

Query: 299 DAGATAHELMATYGWKTVDQAE-TYTK 324
           +      E+    G          Y+ 
Sbjct: 358 NNDVNPKEIQMRLGHADYSITMNLYSH 384


>gi|58584819|ref|YP_198392.1| integrase [Wolbachia endosymbiont strain TRS of Brugia malayi]
 gi|58419135|gb|AAW71150.1| Integrase [Wolbachia endosymbiont strain TRS of Brugia malayi]
          Length = 392

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/145 (15%), Positives = 44/145 (30%), Gaps = 12/145 (8%)

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD----GFMKLLA 246
           +       L  +GLR S++    V  + N    I T K      V +         + + 
Sbjct: 224 REIAIIVLLYGTGLRISEALNLKVSDISNESL-IVTGKGDKQRQVFILPVVKMFIQEYVK 282

Query: 247 MTP-----IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
             P        +  F+    +K+  T  +   +       + +  S H  R   AT    
Sbjct: 283 ACPYLSVNNEAQHLFVGVRGKKLGRTYVANRLQKIRRMLNLPEIVSPHAFRHSFATHLLQ 342

Query: 300 AGATAHELMATYGWKTVDQAETYTK 324
                  +    G  +++  + YT 
Sbjct: 343 ENVDIRFIQQLLGHSSLETTQVYTH 367


>gi|317152205|ref|YP_004120253.1| integrase family protein [Desulfovibrio aespoeensis Aspo-2]
 gi|316942456|gb|ADU61507.1| integrase family protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 340

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 44/260 (16%), Positives = 92/260 (35%), Gaps = 16/260 (6%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKHT 129
           L  L   Y +            I   +  ++  +         K+  +         K  
Sbjct: 62  LDELAKAYIEHEKVKGRDRKFLIEVRNRLNKSFLPALNHVPVHKLKARDFDKLALEYKDL 121

Query: 130 PSSA-IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW--TKEDMQQFKSFW 186
            +S+  +++T + V+F + V  E++  NP  +  +   K E  R    T +D++   +  
Sbjct: 122 SNSSFNRYITYLNVIFNFGVEFEHIEKNPMTNWRKRVMKREKPRDLEITIDDVRAIMAH- 180

Query: 187 SEGSQPRLAFEFLLYSGLRCS--DSCRAGVQHLQ--NNIFSIKTQKTG-TIITVELPDGF 241
                 + A + +L +G R    +  R     +        I+  KT  +   V L D F
Sbjct: 181 -AAPHVQKAIKLILSTGCRPGKSELLRIKYSDVDFDAKRVRIRGSKTARSDRYVPLRDEF 239

Query: 242 MKLLAMTPIGKET-FFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISA 298
           +  +       E+ + +  + +++N   F   F A   ++G+ K    + +R F A+   
Sbjct: 240 LAEIRGWQDAAESDYIVEFEGKQLN--GFKKGFNAAVRRSGIGKKVVPYHLRHFFASSLL 297

Query: 299 DAGATAHELMATYGWKTVDQ 318
              A    + +  G    D 
Sbjct: 298 ANKADIKAVASLMGHAGPDM 317


>gi|326622686|gb|EGE29031.1| integrase [Salmonella enterica subsp. enterica serovar Dublin str.
           3246]
          Length = 430

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 52/346 (15%), Positives = 107/346 (30%), Gaps = 80/346 (23%)

Query: 75  ISEYRKSAHWGSL-----AVNSRISFESYFDQIIRKSGD--------------------F 109
           I+    +  W  L     + N+   +ES    ++   G+                     
Sbjct: 82  ITVLELTERWSELKRMEISSNTMSRYESIIKNMLPLIGENKMVSAVTTEDLLYVRKELLT 141

Query: 110 DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
            ++ +   H R+ V+ RK   S+   ++  M  +F++     Y   NP   + R K+   
Sbjct: 142 GFQVMKKDH-RTQVKGRKS--STVNNYMMLMAEIFQFGTDNGYAKENPFSGINRLKKAKG 198

Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229
              P T ++  +F        Q R  +   +Y+G+R  + C    + +  +  +I  ++ 
Sbjct: 199 EPDPLTTDEFIRFIQACG-HQQMRNLWSLAVYTGMRHGELCGLAWEDIDLHAGTIIVKRN 257

Query: 230 --------------GTIITV----ELPDGFMKLLAMTPIGKE------------------ 253
                         GT   +       D       +T +G++                  
Sbjct: 258 LTQTDEFTLPKTNAGTDRVIYLIQPAIDALRNQAQLTRLGRQFEVEVKLREYGQSVIQPC 317

Query: 254 TFFIN--------NDKQKMNATQFSIWFKAKATKAGVNKS-AHGVRKFSATISADAGATA 304
           TF  +                   +  +     +AG+    A+  R   A  S  AGA  
Sbjct: 318 TFVFSPQCVKRGPRTGYHYAVNSINKIWAPIIKRAGIRYRNAYQSRHTYACWSLSAGANP 377

Query: 305 HELMATYGWKTVDQA-ETYT-----KGADRIRLGIKNSRRISSVVD 344
           + +    G        + Y      K A+++ L  +   R +  + 
Sbjct: 378 NFIATQMGHTDAQMVYKVYGKWMSEKSAEQVSLLNQALSRYAPSLP 423


>gi|239624725|ref|ZP_04667756.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239521111|gb|EEQ60977.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 296

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 43/282 (15%), Positives = 83/282 (29%), Gaps = 43/282 (15%)

Query: 79  RKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSG---VESRKHTPSSAI 134
            +S     L   ++ +     D +I          +I    +R     + + K       
Sbjct: 10  YQSDACSRLKKTTQANKRFLIDSKITPYFVKLPLSEIKPTDVRKWQNELMALKDEKGKGY 69

Query: 135 --QFLTSMR----VLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQQFKSFWS 187
              +L ++      +F +AV+  ++  NPC       K+       WT E+  +F     
Sbjct: 70  SETYLKTINNQLTSIFNYAVKFYHLPENPCHLAGSMSKKSATPKEFWTPEEFNKFIVALK 129

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT------------- 234
           E  +    F  L ++G+   +        +      I+ +K    +              
Sbjct: 130 EAPESYTMFMLLYFTGIHEGEMLALTPLDIDFERSIIRIEKNYQCVDGEDYITSPKTHKG 189

Query: 235 ---VELPDGFMKLLA-------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284
              V +P+   K LA               F           T+          K+GV K
Sbjct: 190 NRTVVMPEVIKKCLADYMEQVYGLKPDDRLF-------PYYKTKLYKDMNKACKKSGVKK 242

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTK 324
              H +R    ++  D G +   +      + V    E Y+ 
Sbjct: 243 NRVHDIRHSHTSLLIDMGCSPLLVAERLCHERVSTTTEVYSH 284


>gi|194448103|ref|YP_002045001.1| integrase [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL476]
 gi|200391077|ref|ZP_03217688.1| integrase [Salmonella enterica subsp. enterica serovar Virchow str.
           SL491]
 gi|204930095|ref|ZP_03221116.1| integrase [Salmonella enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|205360018|ref|ZP_02834057.2| integrase [Salmonella enterica subsp. enterica serovar Weltevreden
           str. HI_N05-537]
 gi|205360812|ref|ZP_02686650.2| integrase [Salmonella enterica subsp. enterica serovar Hadar str.
           RI_05P066]
 gi|194406407|gb|ACF66626.1| integrase [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL476]
 gi|199603522|gb|EDZ02068.1| integrase [Salmonella enterica subsp. enterica serovar Virchow str.
           SL491]
 gi|204321089|gb|EDZ06290.1| integrase [Salmonella enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|205341482|gb|EDZ28246.1| integrase [Salmonella enterica subsp. enterica serovar Weltevreden
           str. HI_N05-537]
 gi|205346898|gb|EDZ33529.1| integrase [Salmonella enterica subsp. enterica serovar Hadar str.
           RI_05P066]
 gi|320085249|emb|CBY95034.1| putative lambdoid prophage Qin defective integrase Flags: Fragment
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. 2007-60-3289-1]
          Length = 446

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 52/346 (15%), Positives = 107/346 (30%), Gaps = 80/346 (23%)

Query: 75  ISEYRKSAHWGSL-----AVNSRISFESYFDQIIRKSGD--------------------F 109
           I+    +  W  L     + N+   +ES    ++   G+                     
Sbjct: 98  ITVLELTERWSELKRMEISSNTMSRYESIIKNMLPLIGENKMVSAVTTEDLLYVRKELLT 157

Query: 110 DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
            ++ +   H R+ V+ RK   S+   ++  M  +F++     Y   NP   + R K+   
Sbjct: 158 GFQVMKKDH-RTQVKGRKS--STVNNYMMLMAEIFQFGTDNGYAKENPFSGINRLKKAKG 214

Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229
              P T ++  +F        Q R  +   +Y+G+R  + C    + +  +  +I  ++ 
Sbjct: 215 EPDPLTTDEFIRFIQACG-HQQMRNLWSLAVYTGMRHGELCGLAWEDIDLHAGTIIVKRN 273

Query: 230 --------------GTIITV----ELPDGFMKLLAMTPIGKE------------------ 253
                         GT   +       D       +T +G++                  
Sbjct: 274 LTQTDEFTLPKTDAGTDRVIYLIQPAIDALRNQAQLTRLGRQFEVEVKLREYGQSVIQPC 333

Query: 254 TFFIN--------NDKQKMNATQFSIWFKAKATKAGVNKS-AHGVRKFSATISADAGATA 304
           TF  +                   +  +     +AG+    A+  R   A  S  AGA  
Sbjct: 334 TFVFSPQCVKRGPRTGYHYAVNSINKIWAPIIKRAGIRYRNAYQSRHTYACWSLSAGANP 393

Query: 305 HELMATYGWKTVDQA-ETYT-----KGADRIRLGIKNSRRISSVVD 344
           + +    G        + Y      K A+++ L  +   R +  + 
Sbjct: 394 NFIATQMGHTDAQMVYKVYGKWMSEKSAEQVSLLNQALSRYAPSLP 439


>gi|158320580|ref|YP_001513087.1| integrase family protein [Alkaliphilus oremlandii OhILAs]
 gi|158140779|gb|ABW19091.1| integrase family protein [Alkaliphilus oremlandii OhILAs]
          Length = 405

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/248 (15%), Positives = 78/248 (31%), Gaps = 37/248 (14%)

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLS---VERPKRKTEGIRPWTKEDMQQFKSFWS 187
            +  +  +S+ VLFK+  R E V  N       +  PK++ + I+    +++        
Sbjct: 158 RALGRKKSSLSVLFKFLYRDEIVKENITDGFNPIRLPKQEPDAIKRLEIDEVALMLDAVD 217

Query: 188 EGSQ---------------PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGT 231
            G                  +      +  GLR S+  +  +     N    +  +K G 
Sbjct: 218 SGEHFTESEKKYWEKTKLRDKAILVLFVTYGLRLSELEQLNLSSFNFNRGEFRIYRKRGK 277

Query: 232 IITVELP------------DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK-AT 278
            + + +             +       +    K+  F++   ++M         K   A 
Sbjct: 278 EVLMPINKTCEIVIKDYVENERTSSELLDDENKDALFLSLQNKRMTTRAIRNLVKKYTAI 337

Query: 279 KAGVNK----SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY-TKGADRIRLGI 333
             G  K    S H +R  +AT     G + +++        V   + Y     +  R  +
Sbjct: 338 VLGTTKENGYSPHKLRATAATSLIQQGFSIYDVQNLLDHDNVTTTQLYAAHKKNVKREIV 397

Query: 334 KNSRRISS 341
           KN   I  
Sbjct: 398 KNFEWIEE 405


>gi|160934339|ref|ZP_02081726.1| hypothetical protein CLOLEP_03210 [Clostridium leptum DSM 753]
 gi|156867012|gb|EDO60384.1| hypothetical protein CLOLEP_03210 [Clostridium leptum DSM 753]
          Length = 363

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 50/292 (17%), Positives = 94/292 (32%), Gaps = 47/292 (16%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR-- 126
           + +     Y +      L  N+ ++ E     +I+   G     +I+TK I +       
Sbjct: 57  SFEAFTELYIRDVK-NRLKENTWLTKEHIIRTKILPFFGKLKISEISTKEIITWQNEMLA 115

Query: 127 ----KHTPSSAIQFLTS---MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR---PWTK 176
               K  P S     T    +  +F  AVR   +  NP   V      +E  R    WTK
Sbjct: 116 YRDEKKKPYSQTYLKTLHNQLSAIFNHAVRYYELRSNPAAKVG--NMGSEEHREMLFWTK 173

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK-------- 228
           E+ ++F     +      AFE L + G+R  +           +  ++   K        
Sbjct: 174 EEYKKFAFEMMDKPVSFYAFEMLYWCGIREGELLALTPADFDFDKETVTINKSYQRLHGE 233

Query: 229 --------TGTIITVELP-------DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF 273
                     +  T+++P         ++ +L         F +         +      
Sbjct: 234 DVITTPKTKKSNRTIKMPHFLCEEMQEYLSMLYGLKKKDRIFTVTK-------SYLHHEM 286

Query: 274 KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              A  AGV +   H +R    ++  D G +A  +    G ++++    Y  
Sbjct: 287 DRGAKAAGVKRIRIHDLRHSHISLLIDMGFSAVAIADRVGHESIEITYQYAH 338


>gi|307693948|ref|ZP_07636185.1| integrase family protein [Ruminococcaceae bacterium D16]
          Length = 401

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 54/385 (14%), Positives = 107/385 (27%), Gaps = 73/385 (18%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKGH--GRRIRLPYPHESTFIPAYMSALTGSTPKREYI 61
             ++P +     T  G   Y  R     G+ + L            + A         + 
Sbjct: 5   KTQIPKY--GTITLKGIQYYRTRITDADGKELSLYAATCEELYEKQLEARKQVEEIIFHR 62

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIR 120
             P       KWL+ +   SA    ++ ++   +     + II+  G+    ++T   IR
Sbjct: 63  QHPTVAEYGEKWLLMQ---SAK---VSASTLRGYTRDMTNYIIKPLGEMYMEEVTADDIR 116

Query: 121 SGVESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI-RPWTKED 178
             +    K +     +    ++ +F  A R + +  NPC+ +     K        T + 
Sbjct: 117 LALVPLSKKSEGLYNKVNMLLKCIFYTAERNQLLEHNPCVGISGKGGKPTKKKEALTDQQ 176

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI----FSIKTQ------- 227
           +         G  P L     LYSGLR  +        +  +      S++         
Sbjct: 177 VAVLLDTVK-GLPPYLFIMLGLYSGLRREEILALQWDCVFLDETTPYLSVRRAWRTEHNR 235

Query: 228 -------KTG-TIITVELPDGFMKLLAMTPIG--KETFFINNDKQKMNATQFSIWFK--- 274
                  KT      + +P   +  L         +    ++  + + A+QF   ++   
Sbjct: 236 PVISTVLKTPAAKRDIPIPKCLVDCLREAKENSISDYVIADSKGEPLAASQFQRVWQYVV 295

Query: 275 ----------------------------------AKATKAGVNKSAHGVRKFSATISADA 300
                                                     + + H +R    T    A
Sbjct: 296 VRSTKPRNYYKYVNGESIKYTVTPTLGMTQKNQPKIKYTLDFDVTPHQLRHTYITNLLYA 355

Query: 301 GATAHELMATYGWKTVDQA-ETYTK 324
           G     +    G +      + Y K
Sbjct: 356 GVDPKTVQYLAGHENSKTTMDIYAK 380


>gi|260593266|ref|ZP_05858724.1| integrase [Prevotella veroralis F0319]
 gi|260534823|gb|EEX17440.1| integrase [Prevotella veroralis F0319]
          Length = 431

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 51/292 (17%), Positives = 100/292 (34%), Gaps = 29/292 (9%)

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLT 138
           R    + +L  + R   E   ++ ++        +   +  R  ++ R    S+    L 
Sbjct: 123 RAEGTYLNLFYSDRNLREFVENKGVQDISIGTITEDLFEEYRFFLKKRGLKASTVNSNLC 182

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WSEGSQPRLA 195
            +  L   AV +  +  NP  + +  K + + IR   K D+ +  +      E    RL 
Sbjct: 183 WLSRLMFRAVSKRIIRCNPFENAKYDKEEKK-IRFLQKSDVMKLMAMKMNEREAELARLM 241

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQ---NNIFSIK--TQKTGTIITVELPDGFMKLLAMTPI 250
           F F  ++GL  SD      +H+Q   +    I+   QKT     V L      ++     
Sbjct: 242 FVFSCFTGLAISDMENLEYKHIQTAADGQMYIRKERQKTKVEFIVPLHPIAEAIINHCRS 301

Query: 251 GKETFFINNDKQKMNATQFSIWFKAKA-------------TKAGV--NKSAHGVRKFSAT 295
            K     + ++Q +     ++ F                    G+    S H  R    T
Sbjct: 302 EKRR---SEEQQTVKEKDDNLVFHRDCSRSVMDAKLSIVGKACGICQRLSFHMARHTFGT 358

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
           +S  AG     +    G  ++   + Y +  D+     K+  R+ +   + +
Sbjct: 359 MSLSAGIPIESIAKMMGHASISSTQVYAQVTDKK--ISKDMDRLIAKQSAKE 408


>gi|149927113|ref|ZP_01915371.1| Phage integrase [Limnobacter sp. MED105]
 gi|149824334|gb|EDM83554.1| Phage integrase [Limnobacter sp. MED105]
          Length = 450

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/287 (13%), Positives = 95/287 (33%), Gaps = 37/287 (12%)

Query: 84  WGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSS---------- 132
           W    + ++       +  +I + G      IT + +          P            
Sbjct: 86  WKRSNIRTKRD---ILEKWLIPQFGKRVISSITKQDLLEFRSVLAKAPGKKPGTTMSASR 142

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
               +TS++ +   A  + +    P  +++R + K   + P+T E+++    +  E  + 
Sbjct: 143 INHVMTSVKQVLDEAADR-FNFTTPYQNIKRMRIKKTDVTPFTIEEVEMIIKYCREDFRD 201

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK---------TQKT-GTIITVELPDG 240
              F    ++G+R  +      +++     + +I+         T KT  +   +++   
Sbjct: 202 Y--FTVKFFTGMRPGEIHGLKWKYIDFEKRLITIRETIVDDYEETPKTADSNRDIQMAPQ 259

Query: 241 FMKLLAM----TPIGKETFFINNDKQKMNATQFSIW-FKAKATKAGVN-KSAHGVRKFSA 294
             + L      T       F N +   +     S   +       G+  ++ +  R   A
Sbjct: 260 VYEALKAQWGVTGTKSPYVFANCNGGPLTNRNMSNRVWYPMLRSLGLKLRTPYQTRHTFA 319

Query: 295 TISADAGATAHELMATYGWKTVDQA-ETYTKGA-DRIRLGIKNSRRI 339
           T+   AG +   +    G  + +   + Y++   +  R       R+
Sbjct: 320 TLMLAAGESPEWIAFQMGHSSTEMLFKVYSRYVPNLTRRDGSAFERM 366


>gi|120435520|ref|YP_861206.1| phage integrase family protein [Gramella forsetii KT0803]
 gi|117577670|emb|CAL66139.1| phage integrase family protein [Gramella forsetii KT0803]
          Length = 443

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 49/284 (17%), Positives = 95/284 (33%), Gaps = 42/284 (14%)

Query: 92  RISFESYFD--QIIRKSGDFDYRKITTKHIRSGV----ESRKHTPSSAIQFLTSMRVLFK 145
           R S   + D     +K+ +  +R I    IR           H P +    L  +R L+ 
Sbjct: 163 RRSKYHWMDGVAYFKKNDNLRFRDIDESFIRKYKTFCSSYLNHKPRTITNQLIFIRTLYN 222

Query: 146 WAVRQEYVAIN--PCLSVERPKRKTEGIRP-WTKEDMQQFKSFWSE------GSQPRLAF 196
            A+++  +A    P    +   R + G +     E++++ +S   E       +   +  
Sbjct: 223 IAIKEGVIAQKYYPFAGEKEKIRISSGNKIGLNVEEIEKIESLELEKYRTIWHTHN-IWL 281

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK---- 252
               ++G+R SD  +      ++N      +K G  +++++PD    ++      K    
Sbjct: 282 FSFYFAGMRISDVIKLKWSDFKDNRLYYVMEKNGKPLSLKIPDKARIIIDYYRPDKKFNN 341

Query: 253 ETFFINND------------KQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISA 298
              F                + K      + + K  A   G++K+   H  R     I  
Sbjct: 342 GYLFPFLREVDQTQAEQIYTRTKSTTKLLNKYLKRIAKLCGIDKTLSNHIARHSFGNI-- 399

Query: 299 DAGATAH--ELMATYGWKTVDQAETYTKGADRI-RLGIKNSRRI 339
            AG   H   L   Y    +     Y   A+ I R   +    +
Sbjct: 400 -AGDRIHPLMLQKLYRHSDLKTTLNY--QANFIHRDADEALDSV 440


>gi|109948086|ref|YP_665314.1| bacteriophage-related integrase [Helicobacter acinonychis str.
           Sheeba]
 gi|109715307|emb|CAK00315.1| bacteriophage-related integrase [Helicobacter acinonychis str.
           Sheeba]
          Length = 378

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 44/273 (16%), Positives = 85/273 (31%), Gaps = 32/273 (11%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRKITT--KHIRSGVESRKHTPSSAIQFLT---SM 140
            L   S  S E  F+ I    G  +  K+    K   +    +           T   ++
Sbjct: 102 GLKNTSLHSLEIVFNSIFSAMGLKESAKLQKITKEAIAKYHEQALQRYKKNTLKTQHANL 161

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRK-TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199
           +    +   + Y+  NP  +V     K  + I P++ E+++         S  +      
Sbjct: 162 KSFLAFCESEGYLEKNPYFAVTLKNAKEAKKIEPFSLEEVEAIIKNAPSLSL-KAFLMVA 220

Query: 200 LYSGLRCSDSCRAGVQHLQ------------NNIFSIKTQKTGTIIT-VELPDGFMKLLA 246
             +G+R  +      + +             N    I + K    +  V+L +   K+L 
Sbjct: 221 FLTGMRTGEQLALTWEDIDFDHQTISINKSLNEWGQITSPKNQNSVREVDLLEPAAKILK 280

Query: 247 MT----PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAG 301
                 P GK+  FI         + F   F+       + ++  +  R   A++    G
Sbjct: 281 ELKKSEPAGKKFVFI---GMPRRTSVFQRRFRELLKALDLKDRKLYTTRHTFASLMLSQG 337

Query: 302 ATAHELMATYGWKTVDQA----ETYTKGADRIR 330
                +    G K ++        Y    DR R
Sbjct: 338 EEPMWVSKMLGHKDLNTTYGAYSHYIPQQDRER 370


>gi|325287290|ref|YP_004263080.1| integrase family protein [Cellulophaga lytica DSM 7489]
 gi|324322744|gb|ADY30209.1| integrase family protein [Cellulophaga lytica DSM 7489]
          Length = 423

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 36/219 (16%), Positives = 81/219 (36%), Gaps = 12/219 (5%)

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---S 187
           ++ ++ +  +R +   A   E++  +P +  +    KT      +++++++ ++      
Sbjct: 186 NTRMKHIQRLRKVVTLAYHLEWIDKDPFVRWKMTYDKTN-REFLSEQELKKLENKVFISE 244

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-----QNNIFSIKTQKTGTIITVELPDGFM 242
              + R  F F  Y+G+   D       HL            K QKT T + V L    +
Sbjct: 245 RLDRVRDLFVFSCYTGISYVDIMNLTPNHLVLGIDGGYWIMTKRQKTNTTVKVPLLGQAL 304

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSAT-ISAD 299
            ++        T   N+    +   + +++ K  A   G+NK  + H  R   AT ++  
Sbjct: 305 DIVNKYKDHPVTAVNNSLLPVLTNEKLNMFLKEVANFVGINKNLTFHMARHTFATTVTLS 364

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338
            G     +    G   +   + Y +  +       N+ +
Sbjct: 365 NGVPIETVSKLLGHSKIATTQIYARVLENKVSADMNALK 403


>gi|294637007|ref|ZP_06715326.1| site-specific recombinase, phage integrase family [Edwardsiella
           tarda ATCC 23685]
 gi|291089791|gb|EFE22352.1| site-specific recombinase, phage integrase family [Edwardsiella
           tarda ATCC 23685]
          Length = 396

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 59/342 (17%), Positives = 118/342 (34%), Gaps = 39/342 (11%)

Query: 19  GKIIYYFRK-----------GHGRRIRLPYPHESTFIPAYMSALT-GSTPKREYINSPRK 66
           GK ++ FR            G G    L           Y++ L  G  P+ +   +  K
Sbjct: 39  GKKLWRFRYQRPATKQRTMMGLGAFPALSLADARGLRADYLALLANGIDPQIQAEAAEEK 98

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNS------RISFESYFDQIIRKSGDFDYRKITTKHIR 120
           +   L  + S  + +A+W  L   S      +  + S    +    G+   ++I  + + 
Sbjct: 99  QQIALDSIFS--KVAANWFQLKSKSVTPDYAKDIWRSLEKDVFPAIGETPVQQIKARTLV 156

Query: 121 SGVESRKHTPS--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP--KRKTEGIRPWTK 176
             +E  K   +  +  + +  +  +  +AV    +  NP   V     K K + +     
Sbjct: 157 EALEPIKARGALETVRRLVQRINEIMIYAVNTGLIDANPASGVGMAFEKPKKQNMPTLRP 216

Query: 177 EDMQQFKSFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKT 229
           E++ +        +   Q R   E+ L + +R S++       +  +           K 
Sbjct: 217 EELPKLMRSLVMSNLSVQTRCLIEWQLLTLVRPSEASGTRWAEIDLDSNLWTIPAERMKA 276

Query: 230 GTIITVELPDGFMKLLAMTP---IGKETFFI--NNDKQKMNATQFSIWFKAKATKAGVNK 284
                V L    +++L +       +E  F   N+ KQ MN+   +   K      G   
Sbjct: 277 KREHIVPLSPQALEILEIMKPISAHREYLFPSRNDPKQPMNSQTANAALKRIGY--GGRL 334

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAET-YTKG 325
            AHG+R  ++T   +AG     + A+      ++    Y + 
Sbjct: 335 VAHGLRSIASTSLNEAGFNPDVIEASLAHTDKNEVRRAYNRS 376


>gi|258508510|ref|YP_003171261.1| integrase [Lactobacillus rhamnosus GG]
 gi|257148437|emb|CAR87410.1| Integrase [Lactobacillus rhamnosus GG]
 gi|259649820|dbj|BAI41982.1| integrase [Lactobacillus rhamnosus GG]
          Length = 389

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 43/318 (13%), Positives = 97/318 (30%), Gaps = 42/318 (13%)

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
           P K     K +  E+ KS        +   + + +   I+   GD    KIT + +++ V
Sbjct: 67  PVKVARKFKDVYEEWLKSYKLTVRESSWSKTRDCFNLHILPDLGDMYIDKITPQDVQTAV 126

Query: 124 ESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG---IRPWTKEDM 179
               K +P +  ++   +  +  +A  ++Y+  NP   +  P+ + +       W +  +
Sbjct: 127 NKWFKQSPVAFKRYFVHINRILTYAELRDYITHNPARRIILPRVQDKIGSTNDFWDRRQL 186

Query: 180 QQFKSFW--SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-------- 229
           + F +           + F  L Y+GLR  ++     + +      I   KT        
Sbjct: 187 EVFFNCINPDRELYKYVLFRILAYAGLRIGEAMALEWEDIDFKKRLISVNKTVSLGVHGK 246

Query: 230 ---------GTIITVELP----DGFMKLLAMTP----------IGKETFFINNDKQKMNA 266
                     +   V +     +   +     P             +  F      +   
Sbjct: 247 LIVNPPKTRASRRDVPVDSETINWLKRWRIEQPDYVYGYVRLSTHHQLLFTTKTGNRFRV 306

Query: 267 TQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYT 323
            +  +W         +    S H  RK   +    AG     +    G        + Y 
Sbjct: 307 DKPRMWLSTIIRNNNLAPVISLHKFRKSYISNLLIAGVAVSTVQKMVGHTDPRITLQIYA 366

Query: 324 KGADRIRLGIKNSRRISS 341
           +        ++ + +++ 
Sbjct: 367 RVHQEQE--VEAAEKLAE 382


>gi|229070616|ref|ZP_04203854.1| Phage integrase [Bacillus cereus F65185]
 gi|228712521|gb|EEL64458.1| Phage integrase [Bacillus cereus F65185]
          Length = 351

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/277 (14%), Positives = 82/277 (29%), Gaps = 31/277 (11%)

Query: 85  GSLAVNSRISF----ESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSM 140
              +  ++  +      +   I    G           I     S+K+  ++  +  T +
Sbjct: 63  KKRSERTKQQYLHDLSHFLRYIKETIGTIQELSHNEMEIYFYELSKKYASTTLRKKKTVV 122

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEG--IRPWTKEDMQQFKSFWSEGSQ-PRLAFE 197
           +   K+      ++ N    +++   K E    R    E++ Q      + +     AF 
Sbjct: 123 QQFLKYVYDNNGLSDNFSSRLKKVSVKKEELVNRDLYPEEVTQILDELKKSNYFVYTAFF 182

Query: 198 FLLYSGLRCSDSCRAGVQHL------QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251
            L  +GLR  +   A    L         +  +  +   +       D    L  +  + 
Sbjct: 183 LLTTTGLRIEEIATAKWADLVFHSSLNAYLLRVVGKGNKSREVRIFEDTLDALCHVRSLR 242

Query: 252 KET----------FFINNDKQKMNATQFSIWFKAKATKAGVN--------KSAHGVRKFS 293
           K+T          F    D     A   S     K  +  ++         + H  R F 
Sbjct: 243 KQTTELDASSTSAFLPKADGSNYRADYLSSLVAKKIEELNLDFLRYRQDRITPHTCRHFM 302

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
           A    + G    ++    G +++   E Y +   R +
Sbjct: 303 ANYLMEKGVELKKIRDYLGHESIMTTERYLRERTRRQ 339


>gi|291279109|ref|YP_003495944.1| phage integrase [Deferribacter desulfuricans SSM1]
 gi|290753811|dbj|BAI80188.1| phage integrase [Deferribacter desulfuricans SSM1]
          Length = 377

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 47/296 (15%), Positives = 99/296 (33%), Gaps = 28/296 (9%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--- 126
           T+  L  E+   +        +  S++ Y  + I   G+   + +T   + + +E     
Sbjct: 82  TIAELCEEWITISK-KKFKKKTIKSYKEYAQRTIPILGNKKIKDVTLDDLDNFIEELYDF 140

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            ++P +       +  +F  A+R+  V +N    V +       I P+T  +++   S  
Sbjct: 141 GYSPKTIKNTKICINQVFDIAMRKNLVDVNLPSRVRKITIPPSNIDPFTPNEVEAILSHI 200

Query: 187 SE-GSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQ---------KT-GTII 233
            +   +    F  L+ +G+R  +      +  +L N  + I            KT G+I 
Sbjct: 201 KKYYPRFYAMFSVLILTGMRIGEVLGMKWKFLNLDNGTYYIMEAMTDGILDTPKTIGSIR 260

Query: 234 TVELPDGFMKLLA-----MTPIGKETFFINNDKQKMNATQ--FSIWFKAKATKAGVNKSA 286
            ++L    +  L            E  F     +     +      +K       +    
Sbjct: 261 KIKLHPDVIDALKYHKKFYAVKDSEFIFNTQYGKAYTTAESIRKNVWKPTLEALNIKYRI 320

Query: 287 --HGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRI 339
             H  R   A+++  AG    ++    G  +V      Y +  D       N++R 
Sbjct: 321 MYHC-RHTYASMALLAGDPPVKVARNLGHTSVQMVYRVYGRFIDDGEESKLNNKRF 375


>gi|229820995|ref|YP_002882521.1| integrase family protein [Beutenbergia cavernae DSM 12333]
 gi|229566908|gb|ACQ80759.1| integrase family protein [Beutenbergia cavernae DSM 12333]
          Length = 380

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/300 (13%), Positives = 84/300 (28%), Gaps = 40/300 (13%)

Query: 64  PRKKPTTLKWLISEYRKSAHWGS-LAVNSRISFESYFDQIIRKSGD-------FDYRKIT 115
           P  +P     L+  Y         L+ ++  ++ S    ++ +           D  ++ 
Sbjct: 65  PPSRPGD-AALVERYALHLEAQRGLSAHTVRAYTSDVADLLAELPPTGDEPNGADLTRLD 123

Query: 116 TKHIRSGVESRKHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
              +R  +  +       S+  +   S R    WA R   +A +    +  P+       
Sbjct: 124 LVALRRWLARQARAGLARSTLARRSASARTFTAWAHRAGLLAEDVGARLRSPRADVVVPV 183

Query: 173 PWTKEDMQQFK-----------------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ 215
             T+ D                         +   +     E L  + LR S+       
Sbjct: 184 VLTEADAATVLDGVRADDGGVGADDDEGERSALALRDSAMLELLYGAALRVSELAGLDTG 243

Query: 216 HLQNNIFSIKTQKTGT--IITVELPDGFMKLLA--------MTPIGKETFFINNDKQKMN 265
            +      ++    G    +          + A          P      F+     +++
Sbjct: 244 DVDLRERLVRVLGKGAKERVVPFGLPAARAIEAWISVRPELAGPRSGRALFLGARGGRID 303

Query: 266 ATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
                        +AGV + + HG+R  +AT     G+    +    G  ++   + YT 
Sbjct: 304 PRVVRDVVHRATARAGVRDLAPHGLRHSAATHLLAGGSDLRSVQEILGHASLATTQRYTH 363


>gi|213854869|ref|ZP_03383109.1| integrase [Salmonella enterica subsp. enterica serovar Typhi str.
           M223]
          Length = 430

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 52/346 (15%), Positives = 107/346 (30%), Gaps = 80/346 (23%)

Query: 75  ISEYRKSAHWGSL-----AVNSRISFESYFDQIIRKSGD--------------------F 109
           I+    +  W  L     + N+   +ES    ++   G+                     
Sbjct: 82  ITVLELTERWSELKRMEISSNTMSRYESIIKNMLPLIGENKMVSAVTTEDLLYVRKELLT 141

Query: 110 DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
            ++ +   H R+ V+ RK   S+   ++  M  +F++     Y   NP   + R K+   
Sbjct: 142 GFQVMKKDH-RTQVKGRKS--STVNNYMMLMAEIFQFGTDNGYAKENPFSGINRLKKAKG 198

Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229
              P T ++  +F        Q R  +   +Y+G+R  + C    + +  +  +I  ++ 
Sbjct: 199 EPDPLTTDEFIRFIQACG-HQQMRNLWSLAVYTGMRHGELCGLAWEDIDLHAGTIIVKRN 257

Query: 230 --------------GTIITV----ELPDGFMKLLAMTPIGKE------------------ 253
                         GT   +       D       +T +G++                  
Sbjct: 258 LTQTDEFTLPKTDAGTDRVIYLIQPAIDALRNQAQLTRLGRQFEVEVKLREYGQSVIQPC 317

Query: 254 TFFIN--------NDKQKMNATQFSIWFKAKATKAGVNKS-AHGVRKFSATISADAGATA 304
           TF  +                   +  +     +AG+    A+  R   A  S  AGA  
Sbjct: 318 TFVFSPQCVKRGPRTGYHYAVNSINKIWAPIIKRAGIRYRNAYQSRHTYACWSLSAGANP 377

Query: 305 HELMATYGWKTVDQA-ETYT-----KGADRIRLGIKNSRRISSVVD 344
           + +    G        + Y      K A+++ L  +   R +  + 
Sbjct: 378 NFIATQMGHTDAQMVYKVYGKWMSEKSAEQVSLLNQALSRYAPSLP 423


>gi|190015612|ref|YP_001967367.1| site-specific tyrosine recombinase XerS [Bacillus cereus]
 gi|208702064|ref|YP_002267276.1| integrase/recombinase, phage integrase family [Bacillus cereus
           H3081.97]
 gi|217956900|ref|YP_002335996.1| site-specific tyrosine recombinase XerS [Bacillus cereus AH187]
 gi|229142253|ref|ZP_04270775.1| Integrase [Bacillus cereus BDRD-ST26]
 gi|116584519|gb|ABK00636.1| phage integrase family protein [Bacillus cereus]
 gi|208657919|gb|ACI30289.1| integrase/recombinase, phage integrase family [Bacillus cereus
           H3081.97]
 gi|217068588|gb|ACJ82836.1| integrase/recombinase, phage integrase family [Bacillus cereus
           AH187]
 gi|228641191|gb|EEK97500.1| Integrase [Bacillus cereus BDRD-ST26]
          Length = 361

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 50/327 (15%), Positives = 99/327 (30%), Gaps = 56/327 (17%)

Query: 67  KPTTLKWLISEYRKSAHWG---SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
            P TL   I+EY K   W     LAV++        D  I             +  +  +
Sbjct: 35  SPATLYAYITEYEKFLKWLVNNRLAVDNGKVVTDICDVPITTLETLPLN--EARSFQRYL 92

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQ-------EYVAINPCLSVERPKRKTEGIRPW-- 174
           +       +  +  ++++ LFK+  +         Y++ N    +E  K K +       
Sbjct: 93  QGEGIETRAINRTFSALKSLFKYLAQNTENEHGENYISRNVMEKIELHKEKVDAAARADD 152

Query: 175 -------TKEDMQ--QFKS-----------------FWSEGSQPRLAFEFLLYSGLRCSD 208
                   K+D+   QF +                 F  +  +       +L +GLR S+
Sbjct: 153 VANMIFNEKDDVAFLQFLANDYGEMLKDISPRKYSFFQRDKERDIAIISLILGTGLRVSE 212

Query: 209 SCRAGVQHLQNNIFSIKTQKTGTI-----ITVELPDGFMKLLAMTPIG------KETFFI 257
                +  +     ++K  + G        T    D   + + + P        ++  F+
Sbjct: 213 VASLTISSINFRQGTVKVTRKGNKRSSILATRSCLDDVQEYIKVRPSKYNCPENEDLLFV 272

Query: 258 NNDKQKMN---ATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWK 314
            N K K                 +     +S H +R   AT           L    G  
Sbjct: 273 TNYKGKFTQLTVRAIQKLIDKYTSAFDEKRSPHKLRHTYATNHYKENKDLVLLRDQLGHT 332

Query: 315 TVDQAETYTKGADRIRLGIKNSRRISS 341
           +V+    YT   ++ +   +   ++  
Sbjct: 333 SVEVTSIYTNINNKKKR--EAIDKLER 357


>gi|145225223|ref|YP_001135901.1| phage integrase family protein [Mycobacterium gilvum PYR-GCK]
 gi|315445672|ref|YP_004078551.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1]
 gi|315445685|ref|YP_004078564.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1]
 gi|315445693|ref|YP_004078572.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1]
 gi|315446113|ref|YP_004078992.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1]
 gi|145217709|gb|ABP47113.1| phage integrase family protein [Mycobacterium gilvum PYR-GCK]
 gi|315263975|gb|ADU00717.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1]
 gi|315263988|gb|ADU00730.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1]
 gi|315263996|gb|ADU00738.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1]
 gi|315264416|gb|ADU01158.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1]
          Length = 360

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 48/314 (15%), Positives = 87/314 (27%), Gaps = 60/314 (19%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKHTP 130
            L++EY +     + +  +  ++        R  G  D +   +TT+ +   +   + TP
Sbjct: 28  ALVNEYLRYLADRNYSPRTLRAYGYDLLAFCRWLGSVDVELSSVTTETVLDFMRHCRQTP 87

Query: 131 ---------------------SSAIQFLTSMRVLFKW--AVRQEYVAINP----CLSVE- 162
                                ++    L ++  LF +            P       V  
Sbjct: 88  IAGRPTNVVSMTGTRLDRYSSTTINHRLAALTGLFTFRELRDPGLRTPIPSGREARRVSA 147

Query: 163 -----------RPKRKTEGIRPWTKEDMQQFKSFWSEGS-------QPRLAFEFLLYSGL 204
                      RPKR++       +   +      +          + R     +L SGL
Sbjct: 148 EERNGLLGHLVRPKRRSALRLREPRRLPRALNRRETAELLSSLRTWRDRALAGLMLLSGL 207

Query: 205 RCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFMKLL-------AMTPIGKETFF 256
           R  +     V  +      +K    G     V L      L+                F 
Sbjct: 208 RSGELLTLDVTDVDIGARWVKVMGKGAKERRVPLDVEVAGLIQTYLLVERPESDSNRLFL 267

Query: 257 INN---DKQKMNATQFSIWFKAKATKAG-VNKSAHGVRKFSATISADAGATAHELMATYG 312
           +       Q + A      F+    K+G +    H +R    T  A+AG     + A  G
Sbjct: 268 VAKGPHRGQPLTAAGLRTIFRYHRIKSGVLAGHPHALRHTFGTAMAEAGVDLAVMQALLG 327

Query: 313 WKTVDQAETYTKGA 326
              +D    Y   A
Sbjct: 328 HAHIDTTARYIHLA 341


>gi|307942963|ref|ZP_07658308.1| phage integrase family recombinase protein [Roseibium sp.
           TrichSKD4]
 gi|307773759|gb|EFO32975.1| phage integrase family recombinase protein [Roseibium sp.
           TrichSKD4]
          Length = 554

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 60/301 (19%), Positives = 106/301 (35%), Gaps = 34/301 (11%)

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK 113
           ST              +L  L +++ + A     + ++R ++   F Q+    G  D  +
Sbjct: 233 STEVASAAPQSPHSSVSLVGLPNDWWQEASRTGHSESTREAYTRAFRQLSEFVGHDDASR 292

Query: 114 ITTKHIRSGVESRKHTPSS---AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT-- 168
           I+TK I S  + R    S+   A   L +++ +F+WAV+   +  NP   V   K     
Sbjct: 293 ISTKDIISFKDHRLTQVSARTVADGDLPALKSIFEWAVKNLILNDNPARDVAVAKSSKTH 352

Query: 169 EGIRPWTKEDMQQFKSFWSEGSQ------------PRLAFEFLLYSGLRCSDSCRAGVQH 216
             +R +T E+     S  S+G++             R A     YSG R  +  +     
Sbjct: 353 RRMRDFTIEEASAILS-ASDGTKRQNKEKPQRWASRRWAPWLCAYSGARVGEVLQLRKAD 411

Query: 217 LQNNIFSI--------KTQKTGTIITVELPD-----GFMKLLAMTPIGKETFFINNDKQK 263
           +      +         T K G    + L       GFM  +   P G    +    +  
Sbjct: 412 IITIDGHVCMKITPEAVTVKGGEERIIPLHPHIIEKGFMGYVEAAPDGPLFMWTGTGRSA 471

Query: 264 M--NATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
              +  +   + +   +   V  S HG R    TI  + G  +  L A  G +     ++
Sbjct: 472 WRTSKNKLREFIRKHVSDPSVQPS-HGWRHTFKTIGREVGIESDILDAICGHRPATVGKS 530

Query: 322 Y 322
           Y
Sbjct: 531 Y 531


>gi|24379471|ref|NP_721426.1| putative transposon integrase; Tn916 ORF3-like [Streptococcus
           mutans UA159]
 gi|24377408|gb|AAN58732.1|AE014942_8 putative transposon integrase; Tn916 ORF3-like [Streptococcus
           mutans UA159]
          Length = 388

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 43/294 (14%), Positives = 84/294 (28%), Gaps = 45/294 (15%)

Query: 74  LISEY-RKSAHWGSLAVNSRISFESYFDQII-RKSGDFDYRKITTKHIRSGVESRKHTP- 130
           L   Y +++A   ++  N++   +   + +   + G      I     +           
Sbjct: 84  LCQLYAKQNAVRPNVKANTKSGRKYLMEILKNDRLGARSIDSIKPSDAKEWAIRMSENGF 143

Query: 131 --SSAIQFLTSMRVLFKWAVRQEYVAINPC--LSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             S+   +  S+R  F  A++ +YV  NP            T      T E   +   F 
Sbjct: 144 AYSTINNYKRSLRASFYIAIQDDYVRKNPFDFQLNTVIDDDTIPKTVLTSEQEARLLDFA 203

Query: 187 SEGSQPRLAFE---FLLYSGLRCSDSCRAGVQHLQ--NNIFSI---------------KT 226
              +     ++    LL +GLR S+ C   V  L   N++ S+                 
Sbjct: 204 KSDTVYHKNYDEILILLKTGLRISELCGLTVSDLDFENHLISVDHQLLRNTELGYYIETP 263

Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKET-----------FFINNDKQKMNATQFSIWFK- 274
           +   +   + +      L        +             F+N       +  F    + 
Sbjct: 264 KTKSSERQIPMEATCQALKRTLAKRDDRKCVEIDGYSHFLFLNRKGYPKTSGDFDRILRN 323

Query: 275 ------AKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
                     +   + + H +R    T  A+AG     L    G   +     Y
Sbjct: 324 LIKKYNKYHEEKLPHITPHTLRHTFCTNCANAGMNPKALQYIMGHANITMTLNY 377


>gi|304360893|ref|YP_003857013.1| gp41 [Mycobacterium phage CrimD]
 gi|302858642|gb|ADL71387.1| gp41 [Mycobacterium phage CrimD]
          Length = 362

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 42/307 (13%), Positives = 87/307 (28%), Gaps = 29/307 (9%)

Query: 42  TFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ 101
            F             +         +  TL   +  Y        +  ++   +E    +
Sbjct: 39  EFKRMVEQLGAAKALEVIETTDAAARHYTLSEWLRHYLDHK--TGVEKSTIYDYEKVVAK 96

Query: 102 IIRK-SGDFDYRKITTKHIRSG---VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINP 157
            I    G      +T   I      +  R     +       +      AVR   +  NP
Sbjct: 97  DIDPVLGPIPLAALTGDDIAKWVQALAERGLKGKTISNKHGFLSSALNAAVRAGRIPGNP 156

Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQH 216
                 P+ +   +   T+   +Q+       + P +   EFL+ SG R  +        
Sbjct: 157 AAGARLPRTEKAEMVFLTR---EQYAKLHDNITLPWQPLVEFLVASGARWGEVVALRPSD 213

Query: 217 LQNNIFSIKTQKTGTIIT---------------VELPDGFMKLLAMTPIGKETFFINNDK 261
           +  +  +++  +                     V   +    +L       E  F NN  
Sbjct: 214 VNRDASTVRISRASKRTYEKGSYSVGAPKTHKSVRTINVDASVLDKLDYSGEHLFTNNVG 273

Query: 262 QKMNATQF-SIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVD- 317
             +    F +  ++    +AG++     H +R   A+    AG     +    G +++  
Sbjct: 274 NPVRHNNFHANVWQPALKRAGLDVKPRVHDLRHTCASWLIAAGVPLPAIRDHLGHESIKI 333

Query: 318 QAETYTK 324
             +TY  
Sbjct: 334 TVDTYGH 340


>gi|303242645|ref|ZP_07329119.1| integrase family protein [Acetivibrio cellulolyticus CD2]
 gi|302589784|gb|EFL59558.1| integrase family protein [Acetivibrio cellulolyticus CD2]
          Length = 418

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/271 (12%), Positives = 81/271 (29%), Gaps = 27/271 (9%)

Query: 87  LAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSGVESRKHTPSSAIQFLTSMRVLF 144
           LA  +  +   Y     +     +     +  +   +   S  +T +S      ++ +  
Sbjct: 125 LAEKTLENKRLYLYDFCKFLNSKNITLNDLCIEETEAFFISMNYTLASRHNAARNLSLFL 184

Query: 145 KWAVRQEYVAINPCLSV--ERPKRKTEGIRPWTKEDMQQF----KSFWSEGSQPRLAFEF 198
           ++A   +Y   +  + +  +  ++  +    + ++++++     +   S G +  L    
Sbjct: 185 RYAYDNKYSQKDTSIYILPDNYRKDCKLPTTYEEDEIKEVLISVERASSIGKRDYLILLL 244

Query: 199 LLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLL------AMTPI 250
               GLR  D        +    N+  I   KT   +   L       +           
Sbjct: 245 ATEYGLRAKDITNLCFDDIDWDRNVIRINQHKTDFPVEFPLLASIGNAIIDYLKYGRPLS 304

Query: 251 GKETFFIN----NDKQKMNATQFSIWFKAKATKAGVN------KSAHGVRKFSATISADA 300
                 ++    N  + +++            +AG+          H +R   AT     
Sbjct: 305 DAPQIIVSAENANKGKPLSSPTIHSVVTKYMKRAGIKNWQNKKHGPHAMRHSLATNLLKK 364

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRL 331
             +   +    G +  +   TY    D  RL
Sbjct: 365 NISMPIISTVMGHQRTETTSTYI-SVDYGRL 394


>gi|301386409|ref|ZP_07234827.1| integrase family protein [Pseudomonas syringae pv. tomato Max13]
 gi|302058952|ref|ZP_07250493.1| integrase family protein [Pseudomonas syringae pv. tomato K40]
          Length = 410

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/280 (13%), Positives = 86/280 (30%), Gaps = 43/280 (15%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKH---IRSGVESRKHTPSSAIQFLTSMRVLF 144
           A ++  +++   + ++ K G      I        ++ +  +  +P +     T +R ++
Sbjct: 104 ATSTSRNYQYKANHVVEKFGKRRIADINKSDLELFQAQLLKKGLSPKTVNDVFTVVRGVW 163

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGI--RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202
             A     +  NP   ++  +R ++     P+T+E+++      S   Q      F  ++
Sbjct: 164 GDAYADGVLRANPLDRIKNIERDSDEDSADPFTREELEALSKIKSARQQDINMILFDCWA 223

Query: 203 GLRCSDSCRAGVQHLQ--NNIFSIKTQK----------TGTIITVELPDGFMKLLAM--- 247
           GL  S+    G   +        I+  +                VEL D  +  L     
Sbjct: 224 GLSLSELIALGWDDVDLEGGTVMIRRARVETEYKIPKEKSRARRVELIDPAIAYLRAQFE 283

Query: 248 -------------------TPIGKETFFINND--KQKMNATQFSIWFKAKATKAGV-NKS 285
                              T      F   N    +  +A+    WF       GV ++ 
Sbjct: 284 ITGAQPAVPITVVQRDNNSTKRENVRFVFRNGQSGEPWHASSVGRWFAGHLKSVGVRHRG 343

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
            +  R   A+ +  +      +    G        + Y +
Sbjct: 344 PNQCRHTFASQALSSYVPVEWVARQLGHTDTTMVKKHYGR 383


>gi|330957543|gb|EGH57803.1| phage-related integrase [Pseudomonas syringae pv. maculicola str.
           ES4326]
          Length = 454

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 49/324 (15%), Positives = 109/324 (33%), Gaps = 30/324 (9%)

Query: 52  TGSTPKREYINSPRKKPT--TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGD 108
            G +P +E   +  +     T      ++ +      +A ++R    S ++ ++    G+
Sbjct: 126 AGKSPAKEIARAKARTKGAETFDAWAEKWLRGYQ---MADSTRDMRLSVYESELKPHFGN 182

Query: 109 FDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
               +I  + +R+  ++   +  P++A+     +  +F+WA+ +     NP   V     
Sbjct: 183 QKLVEINHEDLRTLTDAIVERGAPATAVHSREIVMQVFRWAIERGQKVENPAYLVRPASI 242

Query: 167 KT--EGIRPWTKEDMQ---QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221
                  R    +++    Q+       S  R+A + LL + +R S+   A    +  + 
Sbjct: 243 AKFEPRDRALGPDEIAFMYQYLDRIGTASSVRVAAKLLLLTMVRKSELTNATWNEINFSE 302

Query: 222 FSIK----TQKTGTIITVELPDGFMK---LLAMTPIGKETFFINNDKQ--KMNATQFSIW 272
                     K      V L    +     L     G +  F +       M+    +  
Sbjct: 303 ALWTIPKERMKRRNSHLVFLSQQALDFFIALKRFAGGSDHVFPSRYDSDLPMSTATINQV 362

Query: 273 FK---AKATKAGVNKS---AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG- 325
                  A K G   S    H +R+ ++T+  +AG  +  +      +       Y K  
Sbjct: 363 LTLTYRLAQKEGKPLSKFGPHDLRRTASTLLHEAGYNSDWIEKCLAHEQKGVRAVYNKAE 422

Query: 326 -ADRIRLGIKNSRRISSVVDSDDP 348
             D+ R  +++   +        P
Sbjct: 423 YRDQRRAMLQDWADMIDEWTLKRP 446


>gi|215486336|ref|YP_002328767.1| predicted integrase [Escherichia coli O127:H6 str. E2348/69]
 gi|215264408|emb|CAS08765.1| predicted integrase [Escherichia coli O127:H6 str. E2348/69]
          Length = 372

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 60/355 (16%), Positives = 112/355 (31%), Gaps = 42/355 (11%)

Query: 17  RHGKIIYYFRKG-HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT----- 70
           R G++ Y ++    G+   L          A  +    +  + EY      +  +     
Sbjct: 22  RTGRVYYQYKNPVTGKFHGLGTDKGKAEKIASTANQRIAAAEAEYFMRKIDESPSATKRQ 81

Query: 71  ---LKWLISEYRKSAHWG----SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
              LK  +  Y K          +A  +          ++ + G+   +++  +     +
Sbjct: 82  GIRLKAWVDRYLKIQDTRLKNGDIAATTHKEKTRMAAYLVSRLGNHPLKELEVRDFALIL 141

Query: 124 ESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAI--NPCLSVERPKRKTEGIRPWTKEDM 179
           +    K   S+A         ++K A     V    NP  +  +P  K    R  T ED 
Sbjct: 142 DEWLDKDMVSTARVNRGLWVDIYKEAQHAGEVPPGWNPPEATRKPIPKVTRAR-LTMEDW 200

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239
           Q+  +   E    R A    + +G R  D C      + N    I   KTG  + + L  
Sbjct: 201 QKIYNATPEKHFIRNAMLLAIVTGQRRDDICHMRFSDVWNEHLHITQGKTGMRLALPLTL 260

Query: 240 G-------FMKLLA-MTPIGKETFFINNDK----QKMNATQFSIWFKAKATKAGV----- 282
                     +++          + I++      + M+    S +F      AG+     
Sbjct: 261 RCDAIGITLKEVIDGCRDRILSPYLIHSRHQKQPKPMSKDNLSDYFAKARDLAGIIPPAG 320

Query: 283 --NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY--TKGADRIRLGI 333
               + H  R  S  +    G     L    G K     + Y  T+G + ++L I
Sbjct: 321 KTPPTFHEQRSLSERLYRAQGIDTKTL---LGHKVQATTDRYNDTRGQEWVKLVI 372


>gi|313576880|gb|ADR67052.1| phage integrase family protein [Klebsiella pneumoniae subsp.
           pneumoniae]
          Length = 399

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 54/340 (15%), Positives = 112/340 (32%), Gaps = 35/340 (10%)

Query: 19  GKIIYYFRK-----------GHGRRIRLPYPHESTFIPAYMSALT-GSTPKREYINSPRK 66
           GK ++ FR            G G    L           Y++ L  G  P+ +   +  +
Sbjct: 39  GKKLWRFRYQRPTTKQRTMMGLGAFPALSLADARGLRTNYLALLANGIDPQVQAEVAEEE 98

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNS------RISFESYFDQIIRKSGDFDYRKITTKHIR 120
           +   L  + S    +A+W  L   S      +  + S    +    G+   ++I  + + 
Sbjct: 99  QQIALDSIFST--VAANWFQLKSKSVTPDYAKDIWRSLEKDVFPAIGEIPVQQIKARTLV 156

Query: 121 SGVESRKHTPS--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP--KRKTEGIRPWTK 176
             +E  K   +  +  + +  +  +  +AV    +  NP   V     K K + +     
Sbjct: 157 EALEPIKARGALETVRRLVQRINEIMIYAVNTGLIDANPASGVGMAFEKPKKQNMPTLRP 216

Query: 177 EDMQQFKSFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKT 229
           E++ +        +     R   E+ L + +R S++  A    +  N           K 
Sbjct: 217 EELPKLMRSLVMSNLSVPTRCLIEWQLLTLVRPSEASGARWAEIDLNAKLWTIPAERMKA 276

Query: 230 GTIITVELPDGFMKLLAMTP---IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA 286
                V L    +++L +       +E  F + +  K +    +     K    G    A
Sbjct: 277 KREHIVPLSTQALEILEVMKPISAHREHVFPSRNDPKKSMNSQTANAALKRIGYGGKLVA 336

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAET-YTKG 325
           HG+R  ++T   + G     + A       ++    Y + 
Sbjct: 337 HGLRSIASTALNENGFNPDVIEAALAHSDKNEVRRAYNRS 376


>gi|167755354|ref|ZP_02427481.1| hypothetical protein CLORAM_00868 [Clostridium ramosum DSM 1402]
 gi|167704293|gb|EDS18872.1| hypothetical protein CLORAM_00868 [Clostridium ramosum DSM 1402]
          Length = 377

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 44/304 (14%), Positives = 93/304 (30%), Gaps = 38/304 (12%)

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK 117
           +E I         L++ I E+         A      +   ++ ++    D    ++ TK
Sbjct: 56  KEKIKKSNINNQVLEYYIVEWLNVYRIKFKAPTYVKYYNVIYNYLLPYFKDIKANELNTK 115

Query: 118 HIR--------SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
            +          G   +  +P +    L+  + +  +   +  ++IN    +  PK++ E
Sbjct: 116 QVELFTASLLKEGKNGKPLSPKTVKDILSLFKSIIGYIESEHNISIN--TKIIYPKKQKE 173

Query: 170 GIRPWTKED-MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
             R  +KE+ +   ++   E    +      + +GLR  + C    + +      I   K
Sbjct: 174 KERILSKEEFINLNQTLLQEIDSCKFGVLIAMATGLRIGELCALKWKDISLKENYIYVNK 233

Query: 229 TGTII------------------------TVELPDGFMKLLAMTPIGKETFFINNDKQKM 264
           T   I                         + +P   + L        + + +     K 
Sbjct: 234 TMQRIKNIYSDNPKTIIIEDSPKSSTSNRKIPIPANLITLFKQFRQNDDCYLLTGRSDKF 293

Query: 265 N-ATQFSIWFKAKATKAGVNKS-AHGVRKFSATISADAGATAHELMATYGWKTVDQA-ET 321
                    F+     AG+ K+  H +R   AT+  + G     L    G        + 
Sbjct: 294 VEPRSLERKFRKYIKNAGIEKANFHMLRHTFATMCIEGGFEIKCLSEILGHSGSQITLDR 353

Query: 322 YTKG 325
           Y   
Sbjct: 354 YVHS 357


>gi|320185040|gb|EFW59821.1| putative phage integrase [Shigella flexneri CDC 796-83]
          Length = 347

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 43/215 (20%), Positives = 81/215 (37%), Gaps = 24/215 (11%)

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           ++    L+ ++ L + A  +E+  ++    ++ P+ K + IR     + Q+      E  
Sbjct: 104 ATKATHLSFIKALLR-AAEREWKMLDKAPIIKVPQPKNKRIRWLEPHEAQRLIDECPEPL 162

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGFMKLLA 246
           +     EF L +GLR S+      Q +         + +  K+   I V L D   ++L 
Sbjct: 163 KS--VVEFALATGLRRSNIINLEWQQIDMQRRVAWINPEESKSNRAIGVALNDTACRVLK 220

Query: 247 MTPIGKETFFINNDK--------------QKMNATQFSIWFKAKATKAGVNK-SAHGVRK 291
              IG    ++   K              +KM     + W KA   +AG++    H +R 
Sbjct: 221 KQ-IGNHHRWVFVYKESCTKPDGTKAPTVRKMRYDANTAW-KAALRRAGIDDFRFHDLRH 278

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
              +    AG     L    GW++++    Y   A
Sbjct: 279 TWPSWLVQAGVPLSVLQEMGGWESIEMVRRYAHLA 313


>gi|260663316|ref|ZP_05864207.1| integrase [Lactobacillus fermentum 28-3-CHN]
 gi|260552168|gb|EEX25220.1| integrase [Lactobacillus fermentum 28-3-CHN]
          Length = 373

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/294 (12%), Positives = 88/294 (29%), Gaps = 29/294 (9%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQ 135
           + ++      +  ++  +    + +    G      I     +  +    + H+ ++A +
Sbjct: 68  WYETYKHHQSSRATQDFYRYCINVVNDYFGRRKISTIDRATYQRFLNDFGKSHSKNTASK 127

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLS--VERPKRKTEGIRPWTKEDMQQFKSF----WSEG 189
               +RV  K AV    +  +      +   K +T  +     E++ +  +      S G
Sbjct: 128 MNAYVRVAVKNAVLDNVIPADFTEGTTIVWDKTRTRQVEYLNMEEINRLVALVKESLSPG 187

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK--------------TGTIITV 235
              R      +Y+G+R S+        L     +I+  K                +   +
Sbjct: 188 FPVRYMILTAVYTGMRLSEIAALTWDDLNLPFKTIEISKSWDFKGRTFKDTKTKSSRRII 247

Query: 236 ELPDGFMKLLAMTPI-GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRK 291
            +    +  L      G +  F   D     ++  +   +    K  ++K     H +R 
Sbjct: 248 RVNQELLDCLVELKANGHDLVFARKDGSVCGSSSANRTLRLFLDKLNLDKPGFHFHSLRH 307

Query: 292 FSATISADAGATAHELMATYGWKTVDQAE-TYTKGAD--RIRLGIKNSRRISSV 342
                    G   + +    G   +      Y    D  + R   +  R + S+
Sbjct: 308 SHVAYLLANGVPLYAISKRLGHSNMTTTANRYAYLIDEFKARSDDQIERALVSL 361


>gi|259419368|ref|ZP_05743284.1| putative transposase A [Silicibacter sp. TrichCH4B]
 gi|259344609|gb|EEW56496.1| putative transposase A [Silicibacter sp. TrichCH4B]
          Length = 369

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 48/335 (14%), Positives = 102/335 (30%), Gaps = 77/335 (22%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF-----------DYRKITTKHIRSGV 123
           I ++ +  +    + N+  S+     ++                      I   H R  +
Sbjct: 27  IHDFLRYLYARGSSPNTIRSYAYDLRRVWEFFEARGLEWQGFNISNAVDLIACLHDRIDL 86

Query: 124 ESRKHT---------PSSAIQFLTSMRVLFKWAVRQEYVA-INPCL-------------- 159
            + + T         P++  + L +M     WA+    +   NP                
Sbjct: 87  RAGRLTTSSGPDRLSPATVNRALAAMSSFCDWAIIAGLLTPPNPMRVSKSINKPSVTDRH 146

Query: 160 --------------SVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLR 205
                          V R +      RP + + +++  +  +   + R     +L+ GLR
Sbjct: 147 RPFFEGISRRSASVRVIRVRSVHRLPRPMSDDQIKRLLAEVTS-LRDRALVLLMLHGGLR 205

Query: 206 CSDSCRAGVQHLQNNIFSIKTQ-----------KTGTIITVELPDGFMK------LLAMT 248
             ++    ++ +      +  +           K+     V+L DG         ++   
Sbjct: 206 PGEALSLHLEDIAYGRRRVTVRCRADHPKGARGKSRVERVVDLHDGQALDAISGYVMRDR 265

Query: 249 PIGKETFFI-------NNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISA 298
           P   +T FI           + ++    +  F   A +AG+     + H +R   AT   
Sbjct: 266 PRETDTPFIFLVGGNGTRRSEPLSYAALAKAFARAAERAGIKSPGVTPHALRHTHATRMW 325

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           +AG     L    G  + +    YT+ +D   L  
Sbjct: 326 EAGMRELTLQRRLGHASPESTRIYTRVSDATVLAE 360


>gi|257091624|ref|YP_003165267.1| hypothetical protein CAP2UW1_4695 [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257048633|gb|ACV37820.1| hypothetical protein CAP2UW1_4695 [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 318

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 44/295 (14%), Positives = 102/295 (34%), Gaps = 26/295 (8%)

Query: 55  TPKREYINSPRKKPTTLKWLISEYRKS-AHWGSLAVNSRISFESYFDQIIRK---SGDFD 110
               + + S  + P  +   +  Y         LA  +R +      Q++RK    G   
Sbjct: 7   PRSAQQVRSSAEIPDPIADELHRYDDHLRDVRGLAAGTRRNHCRIVAQLLRKKFAGGVVT 66

Query: 111 YRKITTKHIRSGVESR-KHTPS--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP--- 164
             K++   +R  +  +   +PS  +A Q  T++R   ++        +    ++  P   
Sbjct: 67  IAKLSAADVRRFIARQLGDSPSHSAAAQVATALRSYLRYRTVCGDSVVRLSAAISSPVQW 126

Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEF---LLYSGLRCSDSCRAGVQ--HLQN 219
           K  +   R    +++Q+  +    G +PR  +      L  GLR  +     +     + 
Sbjct: 127 KLAS-LPRALKPDEVQRLLAALPYGRKPRRGYAIVRCALDMGLRAGEIANLSIDAIDWRE 185

Query: 220 NIFSIKTQKTGTIITVELPDG-------FMKLLAMTPIGKETFFINNDKQ--KMNATQFS 270
              ++K  K+     + LP         +++   +    +  F    + +   +      
Sbjct: 186 GTVTLKGTKSRRQDILPLPMATGQALADYLQHERLANPSRALFLCRRESRDIPITTYAVE 245

Query: 271 IWFKAKATKAGVNKS-AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              +    +AG+  S +H +R   A      G++  E+      ++++    Y K
Sbjct: 246 NVIRRACRRAGLPDSGSHLLRHTLACRLVGNGSSLKEVADVLRHRSLETTRIYAK 300


>gi|237739828|ref|ZP_04570309.1| phage integrase [Fusobacterium sp. 2_1_31]
 gi|229423436|gb|EEO38483.1| phage integrase [Fusobacterium sp. 2_1_31]
          Length = 352

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 51/298 (17%), Positives = 104/298 (34%), Gaps = 33/298 (11%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKH 128
            + ++ +Y +      +  +S ++  S F  I     +F   +IT K I        + +
Sbjct: 62  FRKIVDKYLEYKK-MRVKESSFLNLTSIFKNI-TFFDNFILSEITPKIISDFQNELIKTY 119

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT-EGIRPWTKEDMQQFKSFWS 187
            PS+      ++R+LF W VR   ++ NP   VER K +T + I   T ++  Q     +
Sbjct: 120 KPSTVKIININLRMLFTWCVRYRNLSNNPFDMVERLKIETSKKINIITVDEFNQIVEQVN 179

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT------------- 234
                +L F+ L ++GLR  ++    +  +     +I   K  T +              
Sbjct: 180 -NEDMKLMFKLLFWTGLRIGEARALKIDDIDFENKTISVTKNYTKLHGKESLTSPKTKRS 238

Query: 235 ---VELPDGFMKLLA-----MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA 286
              + + D  ++ +         I  + F   + K    A     + K        +   
Sbjct: 239 NRIIRIDDKLVEDIKEYLDKALYIIDDDFIFRHQKTSYTAK----FKKIVLKVLKKDLRI 294

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK-GADRIRLGIKNSRRISSV 342
           H +R   A+   + G     +    G   +      Y+     +    I+   ++  V
Sbjct: 295 HDLRHSHASFLINNGVDILLISQRLGHSNIAMTLNVYSHLYPSKENEAIELINKLKGV 352


>gi|330834471|ref|YP_004409199.1| phage integrase family protein [Metallosphaera cuprina Ar-4]
 gi|329566610|gb|AEB94715.1| phage integrase family protein [Metallosphaera cuprina Ar-4]
          Length = 284

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 48/288 (16%), Positives = 89/288 (30%), Gaps = 42/288 (14%)

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD------- 110
           R  +  P K     ++ I   + S         +   + S  +  ++             
Sbjct: 2   RLQLGEPPKDADPFQYFIQSLKLSGA----GQGTIKLYYSAINDFLKFVNKNPNEVTTQD 57

Query: 111 ----YRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
                  ++ +  RS    RK   S+   ++ ++R   +W      + +N  +    P+ 
Sbjct: 58  VINWINVLSVREGRSKTGDRKGRASTIRSYVIAVRRFLRW------LGVN--VRPPVPRI 109

Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSI 224
           +T   R   + +++   S      + R     LL +GLR S+     V  L        +
Sbjct: 110 RTPERRALRESEIENIISSCKR-LRDRALISLLLDTGLRSSELLSITVGDLDLQERTIRV 168

Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK-------MNATQFSIWFKAKA 277
           +  K G    V        LL          FI   K+        +         K   
Sbjct: 169 RETKNGEERIVFFTARTASLLNQ--------FIRKTKKGENERVFEITYQALYKLVKRLG 220

Query: 278 TKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            K G++    H +R   AT +   GA    +    G K +   + YT 
Sbjct: 221 KKNGISWLRPHILRHTFATNAIKKGAPLPVVQRLLGHKDIKTTQIYTH 268


>gi|323692724|ref|ZP_08106953.1| phage integrase family Site-specific recombinase [Clostridium
           symbiosum WAL-14673]
 gi|323503278|gb|EGB19111.1| phage integrase family Site-specific recombinase [Clostridium
           symbiosum WAL-14673]
          Length = 289

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 41/275 (14%), Positives = 79/275 (28%), Gaps = 29/275 (10%)

Query: 83  HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT--PSSAIQFLTSM 140
           ++      SR +   Y   +       D + +  + +    +    T  P+S    L S+
Sbjct: 22  NYLHQEERSRNTITKYIRDLKVFFTFLDGQPMAKEALLDWKKHLTQTHAPASVNSMLASV 81

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGI----RPWTKEDMQQFKSFWSEGSQPRLAF 196
                W              V+  K + +      +  T E+ ++           RL+ 
Sbjct: 82  NKFLDWLELPGL-------KVKPLKIQRQIFSNPKKELTTEEYRRLIKAAENRQNNRLSL 134

Query: 197 EF--LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM----TPI 250
               +  +G+R S+      +  +           G    + LP    + L        I
Sbjct: 135 LLQTICSTGIRVSELKFITAESAKTGRAEADC--KGKTRIIFLPPDLCRALRHYCRERGI 192

Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGATAHEL 307
                F   +   ++ +      K     AGV       H +R   A            L
Sbjct: 193 DAGIIFCTRNGCPLDRSNIWKDMKMLCDSAGVEPGKVFPHNLRHLFARTYYALEKDLSRL 252

Query: 308 MATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
               G   V     YT  +     G+ +SR++S +
Sbjct: 253 ADLLGHSNVSTTRIYTMES-----GLMHSRQLSRM 282


>gi|308070088|ref|YP_003871693.1| Putative integrase/recombinase y4qK [Paenibacillus polymyxa E681]
 gi|305859367|gb|ADM71155.1| Putative integrase/recombinase y4qK [Paenibacillus polymyxa E681]
          Length = 358

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/247 (12%), Positives = 78/247 (31%), Gaps = 18/247 (7%)

Query: 85  GSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRV 142
            S +  +  ++ S  ++     +  +        +     +  +  + +   Q +++++ 
Sbjct: 115 RSYSSKTIKAYISQTERFFAGLQGTEASINDAVVQKYALVLLEKGLSHAYVNQAISALKF 174

Query: 143 LFKWAVRQEYVAINP-CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201
            F+  ++Q      P      RPK++++     +  ++             +        
Sbjct: 175 YFRHVLKQ------PKSADYVRPKKESKLPDVLSLNEVMHLLKAVKNPKH-KAILYLTYT 227

Query: 202 SGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLL---AMTPIGKETFF 256
           SGLR S+  R  ++          ++  K        L +    ++          +  F
Sbjct: 228 SGLRVSEVVRLRLEDCDRERKVLKVRQGKGRKDRQTLLSEAAFAVVEQYRGVEQPADWLF 287

Query: 257 INND-KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGW 313
                 + +        F+    +AG+ K  S H +R   AT   + G     +    G 
Sbjct: 288 PGQREGRHLTERSAQKVFEKALAEAGIRKQVSIHSLRHSFATHLLENGIDLRYIQELLGH 347

Query: 314 KTVDQAE 320
           ++V    
Sbjct: 348 QSVRTTS 354


>gi|269796152|ref|YP_003315607.1| site-specific recombinase XerD [Sanguibacter keddieii DSM 10542]
 gi|269098337|gb|ACZ22773.1| site-specific recombinase XerD [Sanguibacter keddieii DSM 10542]
          Length = 370

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 54/324 (16%), Positives = 112/324 (34%), Gaps = 32/324 (9%)

Query: 22  IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKS 81
            +  R   GRR       ++        A   +         P+   T ++ +I EY  +
Sbjct: 10  RWQVRVKDGRRDVASKTFDTKRSAQAWEAEQKAKLSGGAWVDPKAGRTPVREVIDEYLAT 69

Query: 82  AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS--GVESRKHTPSSAIQFLTS 139
              G ++  + ++      ++    G      +T + +++  GV++     SS  ++   
Sbjct: 70  -RPGIVSSKTLLTEHLLLGKVTPALGRLPVSAVTREDVQTDLGVQALGLATSSVKRYRGI 128

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-----PWTKEDMQQFKSFWSEGSQPRL 194
           +  LF ++V +     NP    + P    EG       P+T E++++  +   E S    
Sbjct: 129 LSALFTYSVARRLRETNPVSGTKLP-SGAEGHERTEMAPYTLEELREVAAACMEQSPDGD 187

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQN--------------NIFSIKTQKTGTIITVELPDG 240
              FL  +GLR  +     V+ +                     +T K G    V L + 
Sbjct: 188 ITLFLGLTGLRWGEMAALRVKDVLEVPRRAIRVSRSAPTGHAIRETTKGGRDRFVPLVED 247

Query: 241 FMKLLAMTPIG---KETFFINNDKQKMNAT--QFSIWFKAKATKAGVNKSAHGVRKFSAT 295
             +++A   +G    +  F+N   +       +  + +   A      +  H +R  +AT
Sbjct: 248 VWQIVARRMVGRAPDDLLFVNPSGRIWGGWNWKCGVSWAQHAR----GRRVHDLRHTAAT 303

Query: 296 ISADAGATAHELMATYGWKTVDQA 319
           +   +G     + A  G  T    
Sbjct: 304 LWLSSGVPPKTVQAWLGHSTATMT 327


>gi|229008342|ref|ZP_04165819.1| Phage integrase [Bacillus mycoides Rock1-4]
 gi|228752910|gb|EEM02462.1| Phage integrase [Bacillus mycoides Rock1-4]
          Length = 385

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 50/368 (13%), Positives = 117/368 (31%), Gaps = 47/368 (12%)

Query: 21  IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRK 80
              Y++    R+ +     +  F     + L     +R+          +LK  +  +  
Sbjct: 19  YRIYYQDPITRKNK--EKSKKGFPNKAEAKLAAEEMERQLREGHIPTDESLKSYLETWLN 76

Query: 81  SAHWGSLAVNS----RISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF 136
               G++A N+    + S +++           D + +  +   + +  + ++  +    
Sbjct: 77  EYKKGTVAKNTFSLHQNSVKNHIIPYFNNILLKDVKPVLYQKFINNLTEKGYSRRTVEIV 136

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195
             +M    K A+  E ++ NPC  VE + K+K   I+    E + +F     +       
Sbjct: 137 HGTMYNAMKKAIILEKISKNPCDGVEIKIKKKNPEIQFIESELISRFLQEAYKYDYIYWI 196

Query: 196 F-EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT--------------------GTIIT 234
           F + L+ +G+R  ++       +     +I   K+                     +  T
Sbjct: 197 FYKTLIETGMRKGEAAALQWTDVNLKEKTININKSLDFREATKNPNIMFGDTKNYNSKRT 256

Query: 235 VELPDGFMKLLAMTPI---------------GKETFFINNDKQKMNATQFSIWFKAKATK 279
           + + +G    L                            ND   M  +     F     K
Sbjct: 257 ITISEGLANDLHFHQKYQNQNKLALNDNYNFDLNLVLCRNDGNYMPKSSLFNSFSRILKK 316

Query: 280 AGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADRIRLGIKNSR 337
           A +     H +R   A +  +AG +   L    G  ++   ++ Y+  +   +L  +   
Sbjct: 317 ANLPPLPIHSLRHTHAVLQLEAGVSMKYLQERLGHGSMQITSDVYSHIS--KKLDKEAMN 374

Query: 338 RISSVVDS 345
           +    + +
Sbjct: 375 KFEEHMRN 382


>gi|161614452|ref|YP_001588417.1| hypothetical protein SPAB_02201 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|167552988|ref|ZP_02346738.1| integrase [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
 gi|168243779|ref|ZP_02668711.1| integrase [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL486]
 gi|161363816|gb|ABX67584.1| hypothetical protein SPAB_02201 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|205322475|gb|EDZ10314.1| integrase [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
 gi|205337228|gb|EDZ23992.1| integrase [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL486]
          Length = 430

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 52/346 (15%), Positives = 107/346 (30%), Gaps = 80/346 (23%)

Query: 75  ISEYRKSAHWGSL-----AVNSRISFESYFDQIIRKSGD--------------------F 109
           I+    +  W  L     + N+   +ES    ++   G+                     
Sbjct: 82  ITVLELTERWSELKRMEISSNTMSRYESIIKNMLPLIGENKMVSAVTTEDLLYVRKELLT 141

Query: 110 DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
            ++ +   H R+ V+ RK   S+   ++  M  +F++     Y   NP   + R K+   
Sbjct: 142 GFQVMKKDH-RTQVKGRKS--STVNNYMMLMAEIFQFGTDNGYAKENPFSGINRLKKAKG 198

Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229
              P T ++  +F        Q R  +   +Y+G+R  + C    + +  +  +I  ++ 
Sbjct: 199 EPDPLTTDEFIRFIQACG-HQQMRNLWSLAVYTGMRHGELCGLAWEDIDLHAGTIIVKRN 257

Query: 230 --------------GTIITV----ELPDGFMKLLAMTPIGKE------------------ 253
                         GT   +       D       +T +G++                  
Sbjct: 258 LTQTDEFTLPKTDAGTDRVIYLIQPAIDALRNQAQLTRLGRQFEVEVKLREYGQSVIQPC 317

Query: 254 TFFIN--------NDKQKMNATQFSIWFKAKATKAGVNKS-AHGVRKFSATISADAGATA 304
           TF  +                   +  +     +AG+    A+  R   A  S  AGA  
Sbjct: 318 TFVFSPQCVKRGPRTGYHYAVNSINKIWAPIIKRAGIRYRNAYQSRHTYACWSLSAGANP 377

Query: 305 HELMATYGWKTVDQA-ETYT-----KGADRIRLGIKNSRRISSVVD 344
           + +    G        + Y      K A+++ L  +   R +  + 
Sbjct: 378 NFIATQMGHTDAQMVYKVYGKWMSEKSAEQVSLLNQALSRYAPSLP 423


>gi|119716408|ref|YP_923373.1| phage integrase family protein [Nocardioides sp. JS614]
 gi|119537069|gb|ABL81686.1| phage integrase family protein [Nocardioides sp. JS614]
          Length = 303

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 50/294 (17%), Positives = 96/294 (32%), Gaps = 26/294 (8%)

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHWGSLAV-NSRISFESYFDQIIRKSGDFDYRKITT 116
            + I        TL+  ++ Y   A +   +  ++     SY      + G         
Sbjct: 4   AQLIVPGADASATLRIAVAAYL--ARFKGQSRIHTESDLRSYL-GWCGRQGLDPLAAQRP 60

Query: 117 K---HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
                +R   E  ++ PS+  + L+ +   ++  V    +  +P   V RP+  TE    
Sbjct: 61  HVELFLRWMQEVGRYKPSTVSRRLSVVAGFYRTCVIDGLLKHSPAEYVRRPRVSTESP-T 119

Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYS-----GLRCSDSCRAGVQ---HLQNNIFSIK 225
                + Q ++  + G +     +F L +     GLR  ++  A V+    +  +     
Sbjct: 120 LGLSHL-QLEAMLTAGRKSANINDFALVTMLGLLGLRIFEATGANVEALEEVHGHRVLRV 178

Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGK--ETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
             K   I  V LP    + +     G+       +    +M+    +   +A A  AG+ 
Sbjct: 179 WGKGDKIALVPLPPAVGRAIERAVDGRTGGPILRSRTGNRMDRHCATRRLRALARVAGIA 238

Query: 284 KS---AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIK 334
                 H +R    T   DAG    ++              Y    DR R  + 
Sbjct: 239 TDRMHPHMLRHTFVTTMLDAGVDLRDVQIAARHADPRTTMRY----DRARKNLD 288


>gi|237712751|ref|ZP_04543232.1| integrase [Bacteroides sp. D1]
 gi|262406796|ref|ZP_06083345.1| integrase [Bacteroides sp. 2_1_22]
 gi|294645845|ref|ZP_06723527.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294807491|ref|ZP_06766290.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
 gi|298484331|ref|ZP_07002493.1| integrase [Bacteroides sp. D22]
 gi|229447202|gb|EEO52993.1| integrase [Bacteroides sp. D1]
 gi|262355499|gb|EEZ04590.1| integrase [Bacteroides sp. 2_1_22]
 gi|292638811|gb|EFF57147.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294445307|gb|EFG13975.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
 gi|295087263|emb|CBK68786.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A]
 gi|298269521|gb|EFI11120.1| integrase [Bacteroides sp. D22]
          Length = 396

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 53/280 (18%), Positives = 107/280 (38%), Gaps = 26/280 (9%)

Query: 87  LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMRVL 143
           L  ++R +  S  + +     +  +  +T + + S     +      ++  + +  ++  
Sbjct: 121 LKESTRQNHLSTLELLQEFKKEILFTDLTFEFVSSFDNHLQSKGYHLNTIAKHMKHLKRY 180

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRP-WTKEDMQQFKSFWSEGSQPRL-----AFE 197
              A+ +EY+ I      +   +  EG       E++ +F++    G   RL     AF 
Sbjct: 181 INVAINKEYMDIQKYAFRKYKIKSIEGSHTHLAPEELYRFENLQLTGRYTRLQKTKDAFL 240

Query: 198 FLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDGFM----KLLAMTP 249
           F  Y+GLR SD       ++    Q      K+ KTG  + + L   F     ++L    
Sbjct: 241 FCCYAGLRYSDFTSLTSANIVEFHQETWIIYKSVKTGIEVRLPLYLLFEGKGIEILQRYK 300

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHEL 307
              ++FF   D   +N           A  A ++K  S H  R  +AT+   +GA    +
Sbjct: 301 DDLDSFFKLKDNSNINKE-----LNLLAGLAKIDKRVSFHTARHTNATLLLYSGANITTV 355

Query: 308 MATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
               G K+V   + Y    D     +++  + +S  +++ 
Sbjct: 356 QKLLGHKSVKTTQVYANIMD--ITVVRDLEKTASSKNNNR 393


>gi|170741019|ref|YP_001769674.1| integrase family protein [Methylobacterium sp. 4-46]
 gi|168195293|gb|ACA17240.1| integrase family protein [Methylobacterium sp. 4-46]
          Length = 338

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 41/265 (15%), Positives = 87/265 (32%), Gaps = 19/265 (7%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           T+  ++  Y+ +         S  S            G    R+++   +    + R   
Sbjct: 60  TVAEILRRYQAAVSCKKRGARSERSRIGTLQA--HPIGQAQVRRLSASMVARYRDDRLEI 117

Query: 130 PS--SAIQFLTSMRVLFKWAVRQEY---VAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
            +  S  + LT +R   + A R+E+   +  NP   ++ P+      +    E  Q    
Sbjct: 118 VAGDSVRRELTILRHCLEVA-RREWGIPLPSNPVGQIKLPEPSKGRQQRLEAEQAQALIL 176

Query: 185 FWSEGS--QPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDG 240
                     R      + +G+R  +       ++   + I  ++T K G   T+ L  G
Sbjct: 177 ALKRSRVWYLRPLVNLAIETGMRRGELLTLRWANVDLSSRIAYLETTKNGHSRTIPLSPG 236

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISAD 299
            + +L   P      F       +      + ++    +AG+     H +R  + +   +
Sbjct: 237 ALSVLKGLPRTDARVF------PLTGNAVRLAWERLRNRAGLPELRFHDLRHEAISRFFE 290

Query: 300 AGATAHELMATYGWKTVDQAETYTK 324
            G +  E+    G +       YT 
Sbjct: 291 IGLSIPEVALISGHRDTRTLMRYTH 315


>gi|167582273|ref|ZP_02375147.1| hypothetical protein BthaT_29301 [Burkholderia thailandensis TXDOH]
          Length = 294

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 39/238 (16%), Positives = 81/238 (34%), Gaps = 18/238 (7%)

Query: 102 IIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV 161
           I + + D  +  + T  +  G  +R   P +  +++ ++R +    V  E++       V
Sbjct: 27  IRKITADEIFDALPTHRLIKGKPARPLEPGTRNRYVNTIRRMLNLCVEWEWIDR-----V 81

Query: 162 ERPKR--KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ- 218
            + +R  + +    W   ++             R A    + +G+R S+     V  +  
Sbjct: 82  PKLQRFEEPDVRVRWESPEVIMKMINALRIPWMRDAAVVAVATGMRESELFGLRVSQVDL 141

Query: 219 ---NNIFSIKTQKTGTIITVELPDGFMKLL-AMTPIGKETFFINN----DKQKMNATQFS 270
              N   + +  K+    +V L +  M ++        +  F       D       Q  
Sbjct: 142 AQCNAWITHEGAKSRRARSVPLNEDAMSVIKRRMETATDLVFTREFTRGDGPPKLIGQID 201

Query: 271 IW-FKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
              F      AG+ + + H +R   A+     G     L    GW+T+   + Y   A
Sbjct: 202 KRDFARACEVAGMEDFNWHDLRHTWASWHVQRGTPLMVLKELGGWETIAMVQKYAHLA 259


>gi|167553284|ref|ZP_02347034.1| integrase [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
 gi|205322250|gb|EDZ10089.1| integrase [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
          Length = 342

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 49/282 (17%), Positives = 85/282 (30%), Gaps = 36/282 (12%)

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
           ++   TLK L+  + + AH  +L    +     +        G+   R    +      E
Sbjct: 51  KEDRRTLKELVDSWYR-AHGITLKDGLKRQLAMH--HAFECMGEPLARDFDAQMFSRYRE 107

Query: 125 SR------------KHTPSSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGI 171
            R            + +P +    L   R +F    R   +   NP  ++ RP R  E  
Sbjct: 108 KRLKGEYARSNRVKEVSPRTLNLELAYFRAVFNELNRLGEWKGENPLKNM-RPFRTEEME 166

Query: 172 RPW-TKEDMQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
             W T + + Q     +    P L       L +G R S++       L     +    K
Sbjct: 167 MAWLTHDQISQLLGECNRHDHPDLETVVRICLATGARWSEAESLKKSQLAKYKITYTNTK 226

Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA-- 286
                TV +     + L             +DK+    +     F++   + G+   A  
Sbjct: 227 GRKNRTVPISKELYESLP------------DDKKGRLFSDCYGAFRSALERTGIELPAGQ 274

Query: 287 --HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
             H +R   A+     G     L    G   +     Y   A
Sbjct: 275 LTHVLRHTFASHFMMNGGNILVLQRVLGHTDIKMTMRYAHFA 316


>gi|37527360|ref|NP_930704.1| hypothetical protein plu3487 [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36786794|emb|CAE15860.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 352

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 53/281 (18%), Positives = 95/281 (33%), Gaps = 34/281 (12%)

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128
            T+K  + EY K     +L+ ++   ++     +          ++T   +++ ++ R  
Sbjct: 49  RTIKDYLDEYLKICETRNLSPSTINGYKKCKTALSELH-KIPVVELTPAILKTWIQKRST 107

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR--------PWTKEDMQ 180
              +    L+ +R     AV    +++NP   V   + +TE I         P +  ++ 
Sbjct: 108 ALKTIRNNLSFLRSAIDEAVTDCLISMNPVNLVTASRYQTERIENDSEYIVDPLSPNEVT 167

Query: 181 QFKSFWSEGSQPRLAFEFLLY---SGLRCSDSCRAGVQHLQ-------------NNIFSI 224
              S  + G++ +      L+   +GLR S+ C    Q +                I   
Sbjct: 168 ALLS--AAGNKQKQWENLFLFAIHTGLRSSELCALRWQDIDFIGKTAHVQSAKVVGIIKG 225

Query: 225 KTQKTGTIITVELPDGFMKLL---AMTPIGKETFFINNDKQKMNATQFSIWFKAKA---T 278
              K GT       D    LL   A T +     F +    +  A   +I  KA      
Sbjct: 226 TKTKAGTRKVELNTDAMSALLNQKAFTFMKGNVIFEDPKTGEAWAGADAIRKKAWVPTLR 285

Query: 279 KAGVNKS-AHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           KAG+     +  R   AT     G     L A  G K  + 
Sbjct: 286 KAGIRYRNPYQTRHTFATKHISQGVNLFWLAAQMGHKGPEM 326


>gi|229553105|ref|ZP_04441830.1| integrase [Lactobacillus rhamnosus LMS2-1]
 gi|258540280|ref|YP_003174779.1| phage-related integrase [Lactobacillus rhamnosus Lc 705]
 gi|229313602|gb|EEN79575.1| integrase [Lactobacillus rhamnosus LMS2-1]
 gi|257151956|emb|CAR90928.1| Phage-related integrase [Lactobacillus rhamnosus Lc 705]
          Length = 308

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 32/283 (11%), Positives = 84/283 (29%), Gaps = 43/283 (15%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
            K  I  Y++    G++   +   ++     ++  + D    ++  +  +  +       
Sbjct: 12  FKQWIELYKE----GAVRPVTYQKYQMSHKHLVTLAPDLHMDELKRRTYQELINEF---- 63

Query: 131 SSAIQFLTSMRVLFKW-------AVRQEYVAINPCLSVERPKRKTEGIRP--WTKEDMQQ 181
            +A     +              A+ +  +  +P   V      +   +     + ++ +
Sbjct: 64  -AANHEKQTTLDFHHHLKAAILDALDEGLLEQDPTRKVVIKGTVSRMHKVKFLNQHELTK 122

Query: 182 FKSFWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSIKTQKT---------- 229
             +           +  LL   +GLR  ++             ++   KT          
Sbjct: 123 LLALLDLDGGLGWDYFLLLIAKTGLRFGEALGVTPADFDMAKLTLTINKTWDYKSATGSF 182

Query: 230 ----------GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK 279
                        +  ++   F  L+   P  +   F+   ++  N T   I  +    +
Sbjct: 183 AETKNTASVRKVPLDWQVAMQFATLIKNLPQDRP-IFVTEGQRVYNETANDILERK-CKR 240

Query: 280 AGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
           A +   S HG+R   A++   AG +   +    G   +   + 
Sbjct: 241 ASIPVISIHGLRHTHASLLLYAGVSVGSVARRLGHANMSTTQK 283


>gi|331092498|ref|ZP_08341320.1| transposase [Lachnospiraceae bacterium 2_1_46FAA]
 gi|330400719|gb|EGG80322.1| transposase [Lachnospiraceae bacterium 2_1_46FAA]
          Length = 397

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 58/378 (15%), Positives = 106/378 (28%), Gaps = 61/378 (16%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
            ++ K     G   Y +          P P      P+            E       K 
Sbjct: 24  KYLYKYVDAFGNTKYVYAWRLTP--TDPTPKGKREKPSLRELEQQIRRDIEDGIDSTGKK 81

Query: 69  TTLKWLISEY-RKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRSGVESR 126
            T   L   Y +++A   ++  +++   E     +   K G      I     +      
Sbjct: 82  MT---LCQLYAKQNAQRANVKKSTQKQREQLMRLLKEDKLGARSIDTIKPSDAKEWALRM 138

Query: 127 KHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPC--LSVERPKRKTEGIRPWTKEDMQQ 181
           K      ++      S++  F  A++ + V   P      E  +  T+     T+E  Q 
Sbjct: 139 KDKGFSYNTINNHKRSLKASFYIAIQDDCVRKKPFDFKLSEVLENDTKEKVALTEEQEQA 198

Query: 182 FKSFWSEGSQPRLAFE---FLLYSGLRCSDSCRAGVQHLQ------------------NN 220
             SF    +     ++    LL +GLR S+ C   +  +                     
Sbjct: 199 LLSFIKTDNVYHKYYDDVLILLKTGLRISELCGLTIMDVDFIHEVVVIDHQLLKSKEQGY 258

Query: 221 IFSIKTQKTGTIITVELPDG----FMKLLAMTPIG--------KETFFINNDKQKMNATQ 268
                  K+GT   V L       F +++   P              F+N+  +   A  
Sbjct: 259 YIETPKTKSGTR-QVPLSKETIRAFQRVMKKRPKAEPFVIDGRGNFLFVNHKGKPKVAID 317

Query: 269 FSIWFKAKATKAGVNK--------SAHGVRKFSATISADAGATAHELMATYGWKTVD--- 317
           +++ F     K   +         + H +R    T  A       +L    G   +    
Sbjct: 318 YNMLFVRMVKKYNKHHKDNPLPHITPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISITM 377

Query: 318 ----QAETYTKGADRIRL 331
                A   T  ++  RL
Sbjct: 378 NWYAHASIDTAKSEVQRL 395


>gi|313144154|ref|ZP_07806347.1| integrase/recombinase XerD [Helicobacter cinaedi CCUG 18818]
 gi|313129185|gb|EFR46802.1| integrase/recombinase XerD [Helicobacter cinaedi CCUG 18818]
          Length = 354

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 30/188 (15%), Positives = 68/188 (36%), Gaps = 22/188 (11%)

Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEG-------SQPRLAFEFLLYSGLRCSDSCRAGVQ-- 215
           K   +      ++++++F     E        ++ +L  + ++Y+G+R S++     +  
Sbjct: 120 KSGQKLPAYLNQDELERFLQAIDEAELGEKVAARNKLIIKLIVYTGIRVSEALNLRRKDI 179

Query: 216 --HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF-------FINNDKQKMNA 266
             HL   I  I+ +     + +        LL +    + +F       F N   + +  
Sbjct: 180 YPHLDCYIIQIRGKGNKPRVAMIRQSHIQNLLDVWLTQRLSFAPLHDLLFCNTKGKALTQ 239

Query: 267 TQFSIWFKAKATKAGVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           +      +    ++G+ K    AH +R   AT+          +    G   ++ +  YT
Sbjct: 240 SYIYQNVEKILAQSGIRKEKNGAHMLRHSFATLLYQQKHDLVMVQEALGHADLNTSRIYT 299

Query: 324 KGADRIRL 331
              D  RL
Sbjct: 300 H-FDSKRL 306


>gi|227528951|ref|ZP_03959000.1| bacteriophage integrase [Lactobacillus vaginalis ATCC 49540]
 gi|227351124|gb|EEJ41415.1| bacteriophage integrase [Lactobacillus vaginalis ATCC 49540]
          Length = 364

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 44/346 (12%), Positives = 112/346 (32%), Gaps = 38/346 (10%)

Query: 10  FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
           +  + +T   K+ +Y     G+R        ST + A   A+   +   + +     K  
Sbjct: 4   YFKRGKTWSTKVRWY--DDDGKRHSKSKSGFSTKLLAKQWAIDQESKLNKGVQI--AKEI 59

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           +L    + +  +     L+  +   ++   + +     D   + IT    +  +     T
Sbjct: 60  SLVDYYNNWVNTYKKDKLSEITLDRYKYTGEALKGFFHDDKIKSITRVKYQEFINQYGAT 119

Query: 130 --PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP--WTKEDMQQFKSF 185
             P++  +  + +R   K A+  +Y+  +    VE    K + ++      +++ Q  + 
Sbjct: 120 HAPTTVKKVNSIIRACVKSAILDDYLYKDFTQRVELTANKDKVVKVDYLNLKEIHQLLTA 179

Query: 186 ------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS---------------I 224
                    G   R      +Y+G+R ++        +                      
Sbjct: 180 ATDKIEHRPGFTSRFMIVTAIYTGMRLAEIQALTWNDID--WLHQTININKSWDMKTHDF 237

Query: 225 KTQKT-GTIITVELPDGFMKLLAMTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAG 281
           K  KT  +   +++    +  L +    +++   F+N  K    +   +   ++      
Sbjct: 238 KPTKTESSNRKIKVNPELLHYLKILQDNRQSNLVFMNQYKSIPTSNAVNKTLRSLLESLN 297

Query: 282 VNKS---AHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYT 323
           +++     H +R     +    G   + +    G   +   A TY 
Sbjct: 298 IDRRNFHFHSLRHSHVALLLANGIDLYAISKRLGHSNISITANTYA 343


>gi|224437705|ref|ZP_03658652.1| integrase/recombinase XerD [Helicobacter cinaedi CCUG 18818]
          Length = 393

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 30/188 (15%), Positives = 68/188 (36%), Gaps = 22/188 (11%)

Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEG-------SQPRLAFEFLLYSGLRCSDSCRAGVQ-- 215
           K   +      ++++++F     E        ++ +L  + ++Y+G+R S++     +  
Sbjct: 159 KSGQKLPAYLNQDELERFLQAIDEAELGEKVAARNKLIIKLIVYTGIRVSEALNLRRKDI 218

Query: 216 --HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF-------FINNDKQKMNA 266
             HL   I  I+ +     + +        LL +    + +F       F N   + +  
Sbjct: 219 YPHLDCYIIQIRGKGNKPRVAMIRQSHIQNLLDVWLTQRLSFAPLHDLLFCNTKGKALTQ 278

Query: 267 TQFSIWFKAKATKAGVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           +      +    ++G+ K    AH +R   AT+          +    G   ++ +  YT
Sbjct: 279 SYIYQNVEKILAQSGIRKEKNGAHMLRHSFATLLYQQKHDLVMVQEALGHADLNTSRIYT 338

Query: 324 KGADRIRL 331
              D  RL
Sbjct: 339 H-FDSKRL 345


>gi|167758571|ref|ZP_02430698.1| hypothetical protein CLOSCI_00911 [Clostridium scindens ATCC 35704]
 gi|325662801|ref|ZP_08151370.1| hypothetical protein HMPREF0490_02110 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|167663767|gb|EDS07897.1| hypothetical protein CLOSCI_00911 [Clostridium scindens ATCC 35704]
 gi|325470853|gb|EGC74082.1| hypothetical protein HMPREF0490_02110 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 411

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 51/346 (14%), Positives = 98/346 (28%), Gaps = 71/346 (20%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKIT----TKHIR 120
               ++      Y  S  + +L  +++ S+   +D  +    G      I      +   
Sbjct: 68  AGKASVNDTFDRYM-STKY-NLRESTKSSYLYTYDHYVRDTFGKKRIADIKYSDVLQFYY 125

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV----ERPKRKTEGI-RPWT 175
             +   K +  +       +   F+ AVR E +  NP   V     R   K  GI    T
Sbjct: 126 YLLNEVKISLGTLDTVHCLLHPTFQLAVRDEIIRNNPTDGVMKEISRESGKNRGIRHALT 185

Query: 176 KEDMQQFKSF---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN------------ 220
            E  + F  +             F  LL +G R  ++     Q L  +            
Sbjct: 186 VEQQRAFMEYIANHPIYYHWWPMFTVLLGTGCRIGEALGLRWQDLDYDKRTISINHSLSY 245

Query: 221 ---------IFSIKTQKTGTII-TVELPDGFMKLLAMT------------PIGKET--FF 256
                    +  I   KT   I T+ + D       M              I   +   F
Sbjct: 246 YQKPESNKSVLRISKPKTEAGIRTIPMLDIVKDAFEMLYEEQLENGFNESEIDGMSGFIF 305

Query: 257 INNDKQKMNATQFSIWFKAKA--------TKAGVNK---------SAHGVRKFSATISAD 299
            N      N    +   K  A         +A   +         S H +R    T   +
Sbjct: 306 CNRFGMVPNPQTVNHTIKRIANSYNADEVVRAKKERRDPIILPNFSCHHLRHTFCTRLCE 365

Query: 300 AGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVVD 344
                  + +  G + ++   + Y +  +  +   ++   +++ +D
Sbjct: 366 NETNLKVIQSIMGHRNIETTMDIYAEATEEKK--QESFENLAAKLD 409


>gi|50121674|ref|YP_050841.1| prophage integrase [Pectobacterium atrosepticum SCRI1043]
 gi|49612200|emb|CAG75650.1| prophage integrase [Pectobacterium atrosepticum SCRI1043]
          Length = 416

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 43/274 (15%), Positives = 98/274 (35%), Gaps = 20/274 (7%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH 128
           T   + +++ +      LA N+        +  +    G     ++T +H  S +E  + 
Sbjct: 106 TFAKVSADWYELKKSQPLAENTIKDIWRSLEKYVFPFIGTLPITQLTARHFISALEPIQA 165

Query: 129 TPS--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP---KRKTEGIRPWTKED--MQQ 181
           +    +  +    +  +  +AV    +  NP   + +      KT       +    + +
Sbjct: 166 SGKLETVKRVSQRINEVMDYAVNSGLIPANPAAKIRKAFQTPVKTHMPTIRPEALPGLMK 225

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIIT--VEL 237
             S  S   Q RL  E+ L +  R +++        +L++N ++I   +        + L
Sbjct: 226 TLSVASIELQTRLLIEWQLLTVTRPAEAAETRWSEINLKDNTWTIPAGRMKMRRDHIIPL 285

Query: 238 PDGFMKLLAMTPI---GKETFFINN--DKQKMNATQFSIWFKAKATKAGVNKSAHGVRKF 292
           P   + +L         +E  F ++   KQ MN+   +   +    K  +   +HG+R  
Sbjct: 286 PPQALAILDAMKPISGHREYLFPSSKDPKQPMNSQTANAALRRMGYKGVL--VSHGLRAI 343

Query: 293 SATISADAGATAHELMATYGWKTVDQAET-YTKG 325
            +T + + G     + A       ++    Y + 
Sbjct: 344 FSTAANEEGFPPDVIEAALAHVDTNEVRRAYNRS 377


>gi|227503162|ref|ZP_03933211.1| possible phage integrase [Corynebacterium accolens ATCC 49725]
 gi|227076223|gb|EEI14186.1| possible phage integrase [Corynebacterium accolens ATCC 49725]
          Length = 303

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 43/261 (16%), Positives = 81/261 (31%), Gaps = 30/261 (11%)

Query: 85  GSLAVNSRISFESY-FDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL 143
             L   ++    +   + +  K        I    ++  V     + S   Q    +  +
Sbjct: 13  SRLKPKTQHDMLAVWRNHVEPKWAARQVANIKPSEVQGWVSGMDRSASLVRQAHAVLAQI 72

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS- 202
              AV    +  NP   V+ P++        T + +  F               +LL + 
Sbjct: 73  LDLAVMDRAIRENPARGVKLPRKDPTKKVYLTAQQLGLFVDEC----TRYKELVWLLGTV 128

Query: 203 GLRCSDSCRAGVQHLQ--NNIFSIKTQ-------------KTGTIITVELPDGFMKLLAM 247
           GLR  ++    V+ +    N  S++               KT  +  V +P   M++LA 
Sbjct: 129 GLRWGEAAALRVRDVNVLRNRISVERNAVTVGSQVIIGTPKTHEVREVAVPATVMRMLAP 188

Query: 248 TPIGK---ETFFINNDKQKMNATQFSIWFKAKATKAGVNK------SAHGVRKFSATISA 298
              GK   E  +  +D   M       W+     +           + HG+R  +A +  
Sbjct: 189 VMDGKGPDELLWPRHDGTPMKPPTHGKWYYNALNRCMEKYPSFPRVTPHGLRHVAAGLMV 248

Query: 299 DAGATAHELMATYGWKTVDQA 319
            AGA    +    G  +    
Sbjct: 249 SAGANVKAIQRQLGHSSAAMT 269


>gi|307701539|ref|ZP_07638556.1| site-specific recombinase, phage integrase family [Mobiluncus
           mulieris FB024-16]
 gi|307613218|gb|EFN92470.1| site-specific recombinase, phage integrase family [Mobiluncus
           mulieris FB024-16]
          Length = 397

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 59/380 (15%), Positives = 118/380 (31%), Gaps = 60/380 (15%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPK--------REYINSPR 65
           E+ + G+   Y+RKG  + +             +++A   +  K         E ++  +
Sbjct: 26  EKLKSGRYRAYWRKGSIKVLADETFPNRQLASDWLAAQQVAIAKGLIDPELAEEELSPVK 85

Query: 66  KKPTTLKWLISEYRKSAH-WGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGV 123
               T K     Y       G +   +  S++S F   +    GD     IT + ++   
Sbjct: 86  ADVPTFKEWKETYLARREKEGGMKPKTIQSYKSCFKAHLEDTFGDMLINLITNQQVKDWY 145

Query: 124 ESRKHTPSSAIQ-FLTSMRVLFKWAVRQEYVAINPCL---SV-ERPKRKTEGIRPWTKED 178
            S       A +        L   AV +  +  +P     +V ++P          T + 
Sbjct: 146 NSFDGKKLGARKSTYRVFSALMNAAVDEGLIDASPVHVKGAVSKKPTTDNHRNIVATCDQ 205

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----------------NNIF 222
           + +      +  + R+A     +  LR  +      + ++                   F
Sbjct: 206 VSRLAEAMPD--EYRIAVLLAFWCSLRFGEITELRRKDVRFKGEKAVISVTRAVQYAAGF 263

Query: 223 SIKTQKTGTII---TVELPD----GFMKLLAM-TPIGKETFFINNDKQKMNATQFSIWFK 274
                   +      + +P        + +A      KE+  ++      +      W+ 
Sbjct: 264 GYTVGPPKSEAGIRDIAVPPTIVADLKEHIAKYVASDKESLLVH------SPASLVKWYS 317

Query: 275 --------AKATKAGVNK----SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
                   AKA +A  +     + HG+R    T++  +GAT  ELM   G    +    Y
Sbjct: 318 NKSMNGHFAKAKRAVPDLDQRFTFHGLRHSGLTLAGQSGATLAELMHRAGHTNAETVMIY 377

Query: 323 TKG-ADRIRLGIKNSRRISS 341
                DR     +    IS+
Sbjct: 378 QHATQDRDAAIAEKMSAISN 397


>gi|300896888|ref|ZP_07115378.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 198-1]
 gi|300902519|ref|ZP_07120499.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 84-1]
 gi|301023336|ref|ZP_07187129.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 69-1]
 gi|301305635|ref|ZP_07211724.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 124-1]
 gi|300359295|gb|EFJ75165.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 198-1]
 gi|300397061|gb|EFJ80599.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 69-1]
 gi|300405420|gb|EFJ88958.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 84-1]
 gi|300839063|gb|EFK66823.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 124-1]
 gi|315253026|gb|EFU32994.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 85-1]
          Length = 339

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 53/304 (17%), Positives = 100/304 (32%), Gaps = 33/304 (10%)

Query: 59  EYINSPRKKPTTLKWLISEYRKSAHWG----SLAVNSRISFESYFDQIIRKSGDFDYRKI 114
           E  ++ +++   LK  +  Y K          +A  +          ++ + G+   +++
Sbjct: 40  ESPSATKRRGIRLKAWVDRYLKIQDTRLKNGDIAATTHKEKTRMAAYLVSRLGNHPLKEL 99

Query: 115 TTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAI--NPCLSVERPKRKTEG 170
             +     ++    K   S+A         ++K A     V    NP  +  +P  K   
Sbjct: 100 EVRDFALILDEWLDKDMVSTARVNRGLWVDIYKEAQHAGEVPPGWNPPEATRKPIPKVTR 159

Query: 171 IRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
            R  T ED Q+  +   E    R A    + +G R  D C      + N    I   KTG
Sbjct: 160 AR-LTMEDWQKIYNATPEKHFIRNAMLLAIVTGQRRDDICHMRFSDVWNEHLHITQGKTG 218

Query: 231 TIITVELPDG-------FMKLLA-MTPIGKETFFINNDK----QKMNATQFSIWFKAKAT 278
             + + L            +++          + I++      + M+    S +F     
Sbjct: 219 MRLALPLTLRCDAIGITLKEVIDGCRDRILSPYLIHSRHQKQPKPMSKDNLSDYFAKARD 278

Query: 279 KAGV-------NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY--TKGADRI 329
            AG+         + H  R  S  +    G     L    G K     + Y  T+G + +
Sbjct: 279 LAGIIPPAGKTPPTFHEQRSLSERLYRAQGIDTKTL---LGHKVQATTDRYNDTRGQEWV 335

Query: 330 RLGI 333
           +L I
Sbjct: 336 KLVI 339


>gi|294789661|ref|ZP_06754894.1| LOW QUALITY PROTEIN: xylulose-5-phosphate/fructose-6-phosphate
           phosphoketolase [Simonsiella muelleri ATCC 29453]
 gi|294482373|gb|EFG30067.1| LOW QUALITY PROTEIN: xylulose-5-phosphate/fructose-6-phosphate
           phosphoketolase [Simonsiella muelleri ATCC 29453]
          Length = 350

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 52/319 (16%), Positives = 103/319 (32%), Gaps = 20/319 (6%)

Query: 17  RHGKIIYYFRKGHGRRIRLP-YPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75
           R+G      R   G R+R      +        S L     ++  +    KK      L 
Sbjct: 14  RNGTWYMDIRTPSGERVRRSLGTQDKQKAQELRSKLEHEFWQQSRLGIKPKK------LW 67

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVESRKHTPSSA 133
            E   +  W     + + S +    ++    +       ++T   I + +E +K  PS+ 
Sbjct: 68  DE--AALKWLEEKKHEKKSIDDDISRLRNLPQLRGIFLDELTRDIIMAAIEPKKCKPSTK 125

Query: 134 IQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
            +++  +R +   A  +  ++   P   +++ K     IR     + Q+      +    
Sbjct: 126 NRYIALVRAILYKARDEWGWIDEVP--KLKQYKETGGRIRWLKPHEAQRLIDALPDNFWR 183

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQ----NNIFSIKTQKTGTIITVELPDGFMKLLAMT 248
           ++A  F L +GLR  +      + +              K    I V L    +++L+  
Sbjct: 184 QMAI-FSLCTGLRQGNVFGLKWEQVDLARRIAWIYADETKANKAIGVPLNKTAIQILSER 242

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHEL 307
                 F   N             ++    KA + N   H +R   A+     G     L
Sbjct: 243 LGKHPIFVFTNSVNNRIKELDDRVWERSLKKAQIKNFRWHDLRHTWASWLVQKGVPLLAL 302

Query: 308 MATYGWKTVDQAETYTKGA 326
               GW+ ++    Y   A
Sbjct: 303 KEMGGWEKLEMVMRYAHLA 321


>gi|218754647|ref|ZP_03533443.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis
           GM 1503]
 gi|289763070|ref|ZP_06522448.1| integrase/recombinase xerC [Mycobacterium tuberculosis GM 1503]
 gi|289710576|gb|EFD74592.1| integrase/recombinase xerC [Mycobacterium tuberculosis GM 1503]
          Length = 285

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 32/194 (16%), Positives = 65/194 (33%), Gaps = 21/194 (10%)

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS---- 190
           +  ++++    WAVR+  +A +P   ++ PK +        ++   +  +    G+    
Sbjct: 72  RRTSAVKAFTAWAVRRGLLAGDPAARLQVPKARRTLPAVLRQDQALRAMAAAESGAEQGD 131

Query: 191 ----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLL 245
               + RL  E L  +G+R S+ C   V  +      ++   K     TV         L
Sbjct: 132 PLALRDRLIVELLYATGIRVSELCGLDVDDIDTGHRLVRVLGKGNKQRTVPFGQPAADAL 191

Query: 246 AM----------TPIGKETFFINNDKQKMNATQFSIWFKA--KATKAGVNKSAHGVRKFS 293
                       T        +    ++++  Q          A     +   HG+R  +
Sbjct: 192 HAWLVDGRRALVTAESGHALLLGARGRRLDVRQARTAVHQTVAAVDGAPDMGPHGLRHSA 251

Query: 294 ATISADAGATAHEL 307
           AT   + GA    +
Sbjct: 252 ATHLLEGGADLRVV 265


>gi|201067923|ref|ZP_03217802.1| putative Bacteriophage P4 integrase [Campylobacter jejuni subsp.
           jejuni BH-01-0142]
 gi|200004496|gb|EDZ04981.1| putative Bacteriophage P4 integrase [Campylobacter jejuni subsp.
           jejuni BH-01-0142]
          Length = 379

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 36/261 (13%), Positives = 88/261 (33%), Gaps = 23/261 (8%)

Query: 100 DQIIRKSGDFDYRKITTKHIRSGVESRKHT---PSSAIQFLT-SMRVLFKWAVRQEYVAI 155
           + I+   G+    ++T   ++      K+    P +  + +   +  + ++AV+ +++  
Sbjct: 121 NHILEPLGNIHLDELTLYKVQEFYNGMKNKGLEPKTYNRAIKEVLSPMIRYAVKNKWINE 180

Query: 156 NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL---AFEFLLYSGLRCSDSCRA 212
           N  L ++  + + + +    K   +   +   E  +  L   A   L++SG R  +    
Sbjct: 181 NVTLGLKLDRVQNKKLVTNPKGKYEAILNAILELYKDNLLYKALFLLIHSGRRRDEVLSL 240

Query: 213 GVQHLQNNI--FSIKTQKTGTIITVELPDG----FMKLLAMTPIGKETFFINN-DKQKMN 265
             Q++        +   K G      L D        L       K   F+++   +K++
Sbjct: 241 LWQNVDLERKTIFLPKTKNGEAQEHALDDECYNALKALKDEVKQDKGLVFVSSVSGKKIS 300

Query: 266 ATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY-- 322
               +         +GV   + H  R   A+     G     +    G + +     Y  
Sbjct: 301 --NLARQEAKIRELSGVKEWTPHFSRHIKASFLMQNGVNPAVISGALGHRDLSTINIYAT 358

Query: 323 --TKGADRIRLGIKNSRRISS 341
             T  A +     +  +++  
Sbjct: 359 NDTLKASQR--ANEALKKLQE 377


>gi|94497015|ref|ZP_01303588.1| integrase/recombinase [Sphingomonas sp. SKA58]
 gi|94498362|ref|ZP_01304921.1| integrase/recombinase [Sphingomonas sp. SKA58]
 gi|94422242|gb|EAT07284.1| integrase/recombinase [Sphingomonas sp. SKA58]
 gi|94423387|gb|EAT08415.1| integrase/recombinase [Sphingomonas sp. SKA58]
          Length = 334

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 47/300 (15%), Positives = 94/300 (31%), Gaps = 44/300 (14%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG----DFDYRKITTKHIRSGVES--- 125
           WL  +   S H      + R ++      +  + G          ++   +R+ +     
Sbjct: 18  WLAEQRSASIHTIR---SYRDTWRLLLRFVAERKGCGVARLTLTDVSAGEVRAFLHHTEH 74

Query: 126 -RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINP--------CLSVERPKRKTEGIRPWTK 176
            RK T  +    L ++R  F +         NP         L+V   +  T        
Sbjct: 75  GRKTTIGTRNCRLAAIRSFFSF-----VADKNPEYIAQCSEVLAVPLKREPTSAPCYLEP 129

Query: 177 EDMQQFKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT--QKTG 230
           E+++   +  +    EG +  +   FL  SG R  ++     + ++ +  +      K  
Sbjct: 130 EEVEAILAQPNRSTLEGLRDHVLLSFLYNSGARIQEALDLCPEAIRFDAPNFVRLYGKGR 189

Query: 231 TIITVELPDG----FMKLLAMTPIG-KETFFINNDKQKMNATQFSIWFKAKATKAGV--- 282
                 L         KLL   P    E  F+N   + + A+       A   +A     
Sbjct: 190 KERICPLWPETVALLRKLLERQPRAPDERIFVNRYGEPLGASGVRFKLNAYVEQAAKSTL 249

Query: 283 -----NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIRLGIKNS 336
                + + H  R  +A     AG     + +  G  ++D    Y +   +  R  ++  
Sbjct: 250 TLQSKHVTPHSFRHATAVHLVAAGVDITVIRSWLGHVSLDTTNHYAQANLETKRKALEQV 309


>gi|28898639|ref|NP_798244.1| site-specific recombinase IntIA [Vibrio parahaemolyticus RIMD
           2210633]
 gi|28806857|dbj|BAC60128.1| site-specific recombinase IntIA [Vibrio parahaemolyticus RIMD
           2210633]
          Length = 320

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 68/213 (31%), Gaps = 52/213 (24%)

Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225
            + +     T++++++F        + +L  + L  SGLR  +  R  +Q +  +  +++
Sbjct: 98  TEKKLPVVLTRDEVRRFVQHIDP--RYKLHIQLLYGSGLRIMECLRLRIQDIDYDYGAVR 155

Query: 226 --TQKTGTIITVELPDGFMK------------------------------LLAMTPIGKE 253
               K G   TV L     +                              L    P  + 
Sbjct: 156 VWQGKGGKNRTVTLAKELHEPLKSQMNFARNYYFKDRHVPGYAGVYISEGLRRKYPNAEL 215

Query: 254 TF-----FINN-----------DKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSAT 295
            F     F +N            +  +N +      K  A  A + K+   H +R   AT
Sbjct: 216 DFNWHFLFPSNKLSVDKETGQLRRHHINESAIQRAVKRSALDANIEKTVTCHTLRHSFAT 275

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADR 328
              ++GA    +    G   V   + YT   +R
Sbjct: 276 HLLESGADIRTVQEQLGHTDVKTTQIYTHVIER 308


>gi|257431426|ref|ZP_05607800.1| integrase [Staphylococcus aureus subsp. aureus 68-397]
 gi|257277872|gb|EEV08536.1| integrase [Staphylococcus aureus subsp. aureus 68-397]
          Length = 345

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 49/325 (15%), Positives = 109/325 (33%), Gaps = 26/325 (8%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT--TLKWLIS 76
           GK   Y  K  G+R R               A +    K   + S        TL+    
Sbjct: 8   GKKWQYEFKHEGKRYRKKGFRTK------REANSAGLDKLNELRSGFNIDNYITLEEYFE 61

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRSGVE--SRKHTPSSA 133
            + K+     +  N+   + +    I + K G  +  KI  +  +  +   S++H   + 
Sbjct: 62  NWIKTYKQPVVKENTYRHYRNALQHIQKHKIGKMELSKINRQVYQKFINDYSKEHAKETI 121

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSV-----ERPKRKTEGIRPWTKEDMQQFKSFWSE 188
            +   ++R     A+    +  NP   V     +  K + E     T+ ++ +      +
Sbjct: 122 RKTNGAIRSALDDALYDGLIFKNPAYKVNYKAGKPTKSEQEKFISVTEYEILK-DHVRKK 180

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTG-TIITVELPDG----F 241
            ++  LA   ++ +G   S +    ++H+    N   I  +KT  +   + +        
Sbjct: 181 RTRSSLALFIMICTGCHVSGARNIKIEHINQVKNTIFIDERKTNTSPRYISIAKSDMKHI 240

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADA 300
           M +++   I  + +        +N    +   K+      +   ++H +R    +     
Sbjct: 241 MDVISTFAISYDGYIFKEAGSIINLHAINNALKSACRVNNIPIITSHALRHTHCSYLLAK 300

Query: 301 GATAHELMATYGWKTVD-QAETYTK 324
           G + H +    G K +      Y+ 
Sbjct: 301 GVSIHYISKRLGHKNIAITTSVYSH 325


>gi|188493029|ref|ZP_03000299.1| phage integrase family protein [Escherichia coli 53638]
 gi|188488228|gb|EDU63331.1| phage integrase family protein [Escherichia coli 53638]
          Length = 372

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 60/355 (16%), Positives = 112/355 (31%), Gaps = 42/355 (11%)

Query: 17  RHGKIIYYFRKG-HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT----- 70
           R G++ Y ++    G+   L          A  +    +  + EY      +  +     
Sbjct: 22  RTGRVYYQYKNPVTGKFHGLGTDKGKAEKIASTANQRIAAAEAEYFMRKIDESPSATKRR 81

Query: 71  ---LKWLISEYRKSAHWG----SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
              LK  +  Y K          +A  +          ++ + G+   +++  +     +
Sbjct: 82  GIRLKAWVDRYLKIQDTRLKNGDIAATTHKEKTRMAAYLVSRLGNHPLKELEVRDFALIL 141

Query: 124 ESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAI--NPCLSVERPKRKTEGIRPWTKEDM 179
           +    K   S+A         ++K A     V    NP  +  +P  K    R  T ED 
Sbjct: 142 DEWLDKDMVSTARVNRGLWVDIYKEAQHAGEVPPGWNPPEATRKPIPKVTRAR-LTMEDW 200

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239
           Q+  +   E    R A    + +G R  D C      + N    I   KTG  + + L  
Sbjct: 201 QKIYNATPEKHFIRNAMLLAIVTGQRRDDICHMRFSDVWNEHLHITQGKTGMRLALPLTL 260

Query: 240 G-------FMKLLA-MTPIGKETFFINNDK----QKMNATQFSIWFKAKATKAGV----- 282
                     +++          + I++      + M+    S +F      AG+     
Sbjct: 261 RCDVIGITLKEVIDGCRDRILSPYLIHSRHQKQPKPMSKDNLSDYFAKARDLAGIIPPAG 320

Query: 283 --NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY--TKGADRIRLGI 333
               + H  R  S  +    G     L    G K     + Y  T+G + ++L I
Sbjct: 321 KTPPTFHEQRSLSERLYRAQGIDTKTL---LGHKVQATTDRYNDTRGQEWVKLVI 372


>gi|329964321|ref|ZP_08301402.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
 gi|328525370|gb|EGF52418.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
          Length = 403

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 56/283 (19%), Positives = 96/283 (33%), Gaps = 39/283 (13%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSG--DFDYRKITTK---HIRSGVESRKHTP 130
           S YR+S            S +SY  + +   G  D  +  IT       +  ++S+    
Sbjct: 126 SSYRQS-----------KSSQSYLHEYLLSLGMRDIAFEDITEDFGWGYKLYLKSKDCGA 174

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF-KSFWSEG 189
                 LT +  L   AV +E +  NP   V   K+    ++  ++ ++Q+  +    E 
Sbjct: 175 GHINHCLTWLNRLVYIAVDREVIRFNPLADVPYEKKPDYKLKHISRAELQRIMEQPMPER 234

Query: 190 SQP--RLAFEFLLYSGLRCSDSCRAGVQHLQ-----NNIFSIKTQKTGTIITVELPDGFM 242
            Q   R AF F  ++GL   D  R    H+           I  +KT     + L     
Sbjct: 235 LQELTRRAFIFSAFTGLSYVDVKRLYPSHIGTTAGGRRFIRINRKKTDVESFIPLHPVAE 294

Query: 243 KLLAMTPIGKETFFINNDKQK----MNATQFSIWFKAKATKAGV--NKSAHGVRKFSATI 296
           ++L         +   +D +      N  +           AGV  N S H  R    T+
Sbjct: 295 QIL-------SLYNTTDDGRPVFPLPNRNRLWYCIHEIGILAGVKENLSYHASRHSFGTL 347

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
           +  AG     +    G   +   + Y K  D      ++  R+
Sbjct: 348 TLSAGVPIESISKMMGRTNIRTTQGYAKVTDDK--ISEDMDRL 388


>gi|260171385|ref|ZP_05757797.1| transposase [Bacteroides sp. D2]
 gi|315919698|ref|ZP_07915938.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313693573|gb|EFS30408.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 308

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 34/275 (12%), Positives = 84/275 (30%), Gaps = 43/275 (15%)

Query: 87  LAVNSRISFESYFD-QIIRKSGDF-DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLF 144
           +  ++  ++    +  I    G+  +  +   +       +   +  S    L  ++++ 
Sbjct: 22  VKQSTFAAYVLILENHIYPTFGEMYELEENKVQEFALQKINNGLSKKSIKDILIVLKMIL 81

Query: 145 KWAVRQEYVA------INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG-SQPRLAFE 197
           K+ V+  Y+         P         + + +   +    ++  SF  E  +   L   
Sbjct: 82  KFGVKHGYLNYKEWEIRFPTED------EKQHLEVLSISHQKRIMSFIQEHFTFKNLGIY 135

Query: 198 FLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQ---------------------KTGTIIT 234
             L +GLR  + C      +     I SIK                       KT   I 
Sbjct: 136 ICLSTGLRIGEVCALTWDDINIELGIISIKRTIERIYIIDGEKRHTELIINTPKTKNSIR 195

Query: 235 -VELPDGFMKLLAMTP--IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVR 290
            + +    +++L      +    + + N+++      +  ++K       +     HG+R
Sbjct: 196 EIPITKELIRILKPLKKIVNGNYYILTNEEKPTEPRTYRNYYKKLMKDLNIPELKFHGLR 255

Query: 291 KFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
              AT   ++      +    G   +    + Y  
Sbjct: 256 HSFATRCIESNCDYKTVSVILGHSNISTTLDLYVH 290


>gi|227497441|ref|ZP_03927673.1| phage integrase [Actinomyces urogenitalis DSM 15434]
 gi|226833117|gb|EEH65500.1| phage integrase [Actinomyces urogenitalis DSM 15434]
          Length = 459

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 46/237 (19%), Positives = 75/237 (31%), Gaps = 30/237 (12%)

Query: 116 TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
             H+R  +  R      A Q    +R +   AV    +  NP         +    +P T
Sbjct: 196 APHLREDIGRRPGR-CQASQAYRLLRTVLNQAVEDGLIDHNPARVRGAGTSRAPERKPLT 254

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-----NNIFSIKTQKTG 230
             ++    +        R A     YSGLR  +      + +      N   +++  +T 
Sbjct: 255 PAEVSALAAAMPP--HLRAATLLAAYSGLRPGEVFALRRRDIDLSDPTNPTVTVERTQTS 312

Query: 231 TI---------------ITVELPDGFMKLLAM------TPIGKETFFINNDKQKMNATQF 269
           T                 TV +P    + +A        P      F +     M A+  
Sbjct: 313 TRNRQPTIGAPKTAAGRRTVTIPATVARAIATHLDTYTAPGPDALAFTSTTGGPMLASHR 372

Query: 270 SIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           S          G +  + H +R   AT++A +GAT  EL A  G  +   A  Y   
Sbjct: 373 SRAMATARATIGRDDVTWHHLRHTGATLAAISGATMAELQARIGHASPRAAAIYQHA 429


>gi|255281627|ref|ZP_05346182.1| site-specific recombinase, phage integrase family [Bryantella
           formatexigens DSM 14469]
 gi|255267694|gb|EET60899.1| site-specific recombinase, phage integrase family [Bryantella
           formatexigens DSM 14469]
          Length = 413

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 63/412 (15%), Positives = 115/412 (27%), Gaps = 87/412 (21%)

Query: 17  RHGKIIYYFRKGHGRRI---RLPYPHESTFIPA---YMSALTGSTPKREYINSPR----- 65
           R        RKG  +R    R  Y +   F      Y + L     K   +   +     
Sbjct: 5   RKDNKGRALRKGESQRTEDMRYVYTYTDPFGRRKYIYATDLRTLREKENQLLKDQLDGLD 64

Query: 66  ---KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKH--- 118
                   L ++   Y  +     L   +  +++  ++  +  + G     +I       
Sbjct: 65  VYAAGNADLNFVFDRYISTK--TDLRKTTYTNYKYMYNHFVRDEFGKRKIAEIKYSDVLY 122

Query: 119 -IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV-----ERPKRKTEGIR 172
                +  +K   ++     T +   F+ AVR + +  NP   V     ++P R      
Sbjct: 123 FYYHLINEKKLQINTLETIHTVLHPTFQLAVRDDIIRTNPSDGVMAQIKKKPGRNHGVRH 182

Query: 173 PWTKEDMQQFKSFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSI--- 224
             T E  + F ++             F  LL +G R  +      Q L   N   SI   
Sbjct: 183 ALTVEQQRAFMNYTANNPIFCHWTPLFTVLLGTGGRIGEIIGLRWQDLDFENRTISINHS 242

Query: 225 ---------KTQKTGTII----------TVELPDGFMKLLA------------MTPIGKE 253
                    KT+K+   +          T+ + D                    T I   
Sbjct: 243 VVYYAQEGAKTRKSVFQVSLPKTEAGIRTIPMLDAVYDAFKEEYEVQKENGFNSTEIDGM 302

Query: 254 T--FFINNDKQKMNATQFSIWFKAKAT--------KAGVNK---------SAHGVRKFSA 294
           T   F N      N    +   K            KA   K         S H +R    
Sbjct: 303 TGFVFCNRFGNVHNPQTVNRTIKRILESYNAEEVLKAKKEKRQPVILPHFSCHHLRHTFC 362

Query: 295 TISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVVDS 345
           T   +       + +      ++   + Y +  D  +  +++ + +S   D 
Sbjct: 363 TRFCEQETNIKVIQSIMRHANIETTMDIYAEVTDMKK--VESMKHLSEKYDV 412


>gi|314936915|ref|ZP_07844262.1| integrase [Staphylococcus hominis subsp. hominis C80]
 gi|313655534|gb|EFS19279.1| integrase [Staphylococcus hominis subsp. hominis C80]
          Length = 371

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 55/362 (15%), Positives = 109/362 (30%), Gaps = 45/362 (12%)

Query: 1   MTPSLRLPPFVTKERTRHGKIIYYFRKG----HGRRIRLPYPHESTFIPAYMSALTGSTP 56
           M   L+L   + K+  R     YYFR       G R  +          A  +       
Sbjct: 4   MQHDLKLSHNIYKDAKRG---TYYFRIKYYEKTGERKEIKRTGYKQRKEAVKAC-NAYMD 59

Query: 57  KREYINSPRKKPTTLKWLISEYRK--SAHWGSLAVNSRISF-ESYFDQIIRKSGDFDYRK 113
           + E I    + P     L+ EY +  SA   + ++ S  +   ++     +    F+   
Sbjct: 60  EIEGIGKINQLP--FDELVQEYVEWYSARRKASSLKSLKTHTNNHLLPFFKSMDVFNMTT 117

Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT-EGIR 172
                 ++      H+     +    +  +   A++   +  N    V   + +T + + 
Sbjct: 118 QDIMKFQNKKMKEAHSGEYLKKMHVFLVSILNHAMKYHDLKQNVASLVGNFEIETQKRLN 177

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSI------ 224
            WT E   QF +      Q ++ F+ L  SG R  +        +  +++   I      
Sbjct: 178 YWTLEQFNQFYNMLP-NLQQKVFFKLLFMSGARKGEIRALTWDDVNFEDDYIHINKTDYH 236

Query: 225 ---KTQKTGTII-TVELP----DGFMKLL----AMTPIGKETFFINNDKQKMNATQFSIW 272
                 KT   I  + LP    D   + L                    +  + +    W
Sbjct: 237 GIVTAPKTKASIRDIYLPAHMMDDLQEYLNWYKDNNIYKSNYVLFGTFFKAFSESAIDRW 296

Query: 273 FKAKATKAGVNKS---------AHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETY 322
           F     +                H +R   A++  + GA+   +    G  + ++    Y
Sbjct: 297 FTGTLKQLDETLPDGETFPRIVIHELRHSHASMLVNHGASPMIIAQRLGHSSTEEVTSRY 356

Query: 323 TK 324
             
Sbjct: 357 GH 358


>gi|294507521|ref|YP_003571579.1| Tyrosine recombinase xerD [Salinibacter ruber M8]
 gi|294343849|emb|CBH24627.1| Tyrosine recombinase xerD [Salinibacter ruber M8]
          Length = 360

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 48/286 (16%), Positives = 89/286 (31%), Gaps = 49/286 (17%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFK 145
           +  ++  +   F+Q +    D   R +T  H++   E  K     SS  + L++++ LF 
Sbjct: 60  SARTQEEYARDFEQFVEFV-DLPLRYVTLGHLQEYREHLKDGYARSSQKRKLSAVKSLFT 118

Query: 146 WAVRQEYVAINPCLSVERPK-RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGL 204
           +  +  Y A N   ++  P  R     R  ++ D+           +  +       SG 
Sbjct: 119 FGTKLRYFAHNVGAALSTPSVRNDRAERILSEADLWALL-RDERDLRNHVLLRLFYASGG 177

Query: 205 RCSDSCRAGVQHLQN-----------NIFSIKTQKTGTIITVELPDGFMKLLAMT----- 248
           R SD      + L++                   K G    V L      L+        
Sbjct: 178 RISDVEDLRWRDLKDRPDLNGPDGRPGGQVTFFGKGGKTRAVTLYSKVWSLIIRLRENEE 237

Query: 249 ----PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-------------------- 284
                   +  F +     ++ +Q     K  A +AGV                      
Sbjct: 238 SEGHGAADDPVFRSQKGGCLSRSQIWRVVKKAAVRAGVKLTEKTGPEGAVKRDEEGEPIM 297

Query: 285 ----SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
               S H  R   A+ +   GA    +  T G ++++  +TY    
Sbjct: 298 TSEVSPHWFRHAHASHALQKGADLELVRETLGHESIETTKTYLHAQ 343


>gi|264677571|ref|YP_003277477.1| phage integrase [Comamonas testosteroni CNB-2]
 gi|262208083|gb|ACY32181.1| phage integrase [Comamonas testosteroni CNB-2]
          Length = 394

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 51/280 (18%), Positives = 94/280 (33%), Gaps = 33/280 (11%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYF--DQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132
           +  Y +    G ++ ++   +      +++ R  G     ++    +R  V     T  +
Sbjct: 99  LDTYARQVKNGQMSPSTYNGYAKAITGERMRRWHG-LKVGEVLPSLLRDWVSEMDCTSKA 157

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-------PWTKEDMQQFKSF 185
               LT +R LF+ A+  E +  NP   +   K   +  +       P++  + +     
Sbjct: 158 IRNMLTPLRSLFEDALNDELIDFNPFERIALSKLIRQTAKASDYVVTPFSAAEREAILKA 217

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-----------FSIKTQKTGTII- 233
                  R   +F   +GLR  +       H+                 IK  KT   I 
Sbjct: 218 CRP--DERPMLQFWFETGLRPGELQALQWSHIDLERAIARIELNQVAGVIKGPKTAAGIR 275

Query: 234 TVELP-DGFMKLLAMTPIG---KETFFINND-KQKMNATQ--FSIWFKAKATKAGVNKS- 285
            VEL  +    L A  PI     E  ++N    +  +         ++    +A V    
Sbjct: 276 DVELSAEALAALRAQRPISELKGERIWLNPRTGEPWSTDAQIRKTLWQPVCKRAEVEYRN 335

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
            + VR   A+    AGA    + +  G + V+    TY K
Sbjct: 336 PYQVRHTYASALLTAGANPWYVASQLGHEDVEMVFRTYGK 375


>gi|218133921|ref|ZP_03462725.1| hypothetical protein BACPEC_01810 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991296|gb|EEC57302.1| hypothetical protein BACPEC_01810 [Bacteroides pectinophilus ATCC
           43243]
          Length = 413

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 53/396 (13%), Positives = 119/396 (30%), Gaps = 76/396 (19%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEY 78
           GK +Y +    G+R  +   +    +      +     + + +++     +T+ ++   Y
Sbjct: 24  GKYVYTYVDPEGKRRSI---YSKDIMELREREVKLMKDQLDGLDAYAAGTSTINFVFDRY 80

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVESRKHTPSSAIQFL 137
             +     L   +  +++  +D+ IR   G      +    +    +         I  L
Sbjct: 81  ISTKA--ELRETTMRNYKYMYDRFIRGGFGKKKIAAVKYSDVLQFYQHLLKEKEMQINTL 138

Query: 138 TSMRVL----FKWAVRQEYVAINPCLSV-----ERPKRKTEGIRPWTKEDMQQFKSFWSE 188
            ++  +    F+ AVR   + +NP   V     ++P +        T E  + F  +  E
Sbjct: 139 ETIHTVLHPTFQLAVRDNIIRVNPSDGVMAQIKKQPGKNHGVRHALTVEQQRAFIRYIDE 198

Query: 189 GSQPRLA---FEFLLYSGLRCSDSCRAGVQHLQNNI-----------------------F 222
                     F+FLL +G R  ++     + +                           F
Sbjct: 199 SPTFYHWASFFKFLLGTGCRIGEAIGIRWEDIDLEKRTISINHSVVYYSREFKEHPICSF 258

Query: 223 SIKTQKTGTII-TVELPDGFMKLLAMTPIG--------------KETFFINNDKQKMNAT 267
           ++   KT   I T+ + D     L M                  K   F+N      N  
Sbjct: 259 AVSLPKTEAGIRTIPMMDTVYDALQMELDDQKEHGFNETVIDGMKGFIFMNRFGNIHNPQ 318

Query: 268 QFSIWFKAK---------ATKAGVNK--------SAHGVRKFSATISADAGATAHELMAT 310
             +   K              A  ++        S H +R    +   +       + + 
Sbjct: 319 AVNRAIKRIYEAHNAEEVVKAAKQHREPVIIPHFSCHHLRHTFCSRFCENETNLKVIQSI 378

Query: 311 YGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVVDS 345
            G   ++   + Y +  D  +   +  + ++  +D 
Sbjct: 379 MGHANIETTMDIYAEVTDTKK--QEAIQNLAHNLDV 412


>gi|12831419|gb|AAK02076.1| site-specific recombinase IntIA [Vibrio parahaemolyticus]
          Length = 320

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 46/309 (14%), Positives = 95/309 (30%), Gaps = 59/309 (19%)

Query: 76  SEYRKSAHWGSL----AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
           S++  S     L    A  +  S+  +  + I         K++   +   +        
Sbjct: 3   SQFLLSVKEHMLTRHYANKTIESYLFWIKRFIVFHQLAHPSKLSEDDVIRFLSHLAIDEK 62

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK--RKTEGIRPWTKEDMQQFKSFWSEG 189
            A++          +   +++      L +   K   + +     T++++++F       
Sbjct: 63  VAVKTQALALNAISFLY-RDFFKTPLSLDMRFQKSLTEKKLPVVLTRDEVRRFVQHIDP- 120

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMK---- 243
            + +L  + L  SGLR  +  R  +Q +  +  +++    K G   TV L     +    
Sbjct: 121 -RYKLHIQLLYGSGLRIMECLRLRIQDIDYDYGAVRVWQGKGGKNRTVTLAKELHEPLKS 179

Query: 244 --------------------------LLAMTPIGKETF-----FINN-----------DK 261
                                     L    P  +  F     F +N            +
Sbjct: 180 QMNLARNYYFKDRHVPGYAGVYISEGLRRKYPNAELDFNWHFLFPSNKLSVDKETGQLRR 239

Query: 262 QKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQA 319
             +N +      K  A  A + K+   H +R   AT   ++GA    +    G   V   
Sbjct: 240 HHINESAIQRAVKRSALDANIEKTVTCHTLRHSFATHLLESGADIRTVQEQLGHTDVKTT 299

Query: 320 ETYTKGADR 328
           + YT   +R
Sbjct: 300 QIYTHVIER 308


>gi|327394792|dbj|BAK12214.1| hypothetical protein PAJ_2134 [Pantoea ananatis AJ13355]
          Length = 402

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 48/325 (14%), Positives = 109/325 (33%), Gaps = 28/325 (8%)

Query: 49  SALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSG 107
           +A      ++    +  K   T      ++ +      +A ++R    S +++ +  K G
Sbjct: 77  AAGKSPAKEKARDKARVKDAETFGAWAEKWLRGYQ---MAESTRDMRRSVYERELKPKFG 133

Query: 108 DFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165
           +    +IT + +R+  ++   +  P++A+     +  +++WA+ +     NP   V    
Sbjct: 134 NHKLAEITHEDLRALTDAIVERGAPATAVHTREIVLQVYRWAIERGQKVENPADLVRPTT 193

Query: 166 RKT--EGIRPWTKEDMQQFKSFWS-EGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQNN 220
                   R  T +++     +    G+ P  R A + LL + +R S+   A    +   
Sbjct: 194 IAKFEPRDRALTPDEIGLMYQYMERIGTTPSIRAAAKLLLLTMVRKSELTNATWSEINFT 253

Query: 221 IFSIK----TQKTGTIITVELPDGFMKLLAMTPI---GKETFFINNDKQ--KMNATQFSI 271
                      K      V L    + +         G E    +       M++   + 
Sbjct: 254 EALWTIPKERMKRRNSHLVFLSKQALDIFIALKTFAGGSEYVLPSRYDSDLPMSSATLNQ 313

Query: 272 WFK---AKATKAGV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
                   A K G+       H +R+ ++T+  +AG     +      +       Y K 
Sbjct: 314 VLTLTYRLAQKEGLSLGKFGPHDLRRTASTLLHEAGYNTDWIEKCLAHEQKGVRAVYNKA 373

Query: 326 --ADRIRLGIKNSRRISSVVDSDDP 348
              D+ R  +++   +        P
Sbjct: 374 EYRDQRRAMLQDWADMIDEWTIRKP 398


>gi|148360858|ref|YP_001252065.1| site specific recombinase [Legionella pneumophila str. Corby]
 gi|296106078|ref|YP_003617778.1| Site-specific recombinase XerD [Legionella pneumophila 2300/99
           Alcoy]
 gi|148282631|gb|ABQ56719.1| site specific recombinase [Legionella pneumophila str. Corby]
 gi|295647979|gb|ADG23826.1| Site-specific recombinase XerD [Legionella pneumophila 2300/99
           Alcoy]
          Length = 407

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 54/374 (14%), Positives = 109/374 (29%), Gaps = 61/374 (16%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSAL----TGSTPKREYINSPRKKPTTLKWL 74
           G + Y  +   G++I L      T   A   A+      +            KP TL+  
Sbjct: 38  GTMRYVCQYKRGKKINLGTVGVMTAAQAREKAIEVLSNANKGIEPTAQKGINKPKTLQEF 97

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG---DFDYRKITTKHIRSGVESR---KH 128
           I        +    +++    +     +IR           +IT   +      R     
Sbjct: 98  IES-----DYKPWVLSTHKRGQETLAGLIRCYKAFFSKPLGEITPALVEQWRVKRLNEGT 152

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK-TEGIRPWTKEDMQQFKSFWS 187
           + ++  + ++ ++ L   AV   ++  N    ++  K   +  IR  +  +  + +    
Sbjct: 153 SQATLNRNISMLKSLMTKAVEWGFLKENALGKLKPYKIDRSPKIRYLSFAEEARLREALI 212

Query: 188 EGSQP-RLAF-------------------------------EFLLYSGLRCSDSCRAGVQ 215
           E     RL                                    + +GLR  +       
Sbjct: 213 ERDNQLRLMRKNGNLWREKRGYDLLPELSEDNACDYLMPMVLLSINTGLRRGELFHLTWD 272

Query: 216 HLQNNIFSIKTQ----KTGTIITVELPDGFMKLLAMTPIGKE----TFFINNDKQKMNAT 267
            +  +  S+       K      + L D   K+L       E      F + + Q  N  
Sbjct: 273 MVNLSEGSLILSGEITKNKHSRYIPLNDEAYKILDNLHKKAERKEGLVFPSKNNQPFNHV 332

Query: 268 QFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           + S  + +   KA + +   H +R   A+    AG   + +    G   +     Y   A
Sbjct: 333 KRS--WGSLLKKANITQFRWHDLRHHFASKLVMAGVDLNTVRELLGHSDIAMTLRYAHLA 390

Query: 327 DRIRLGIKNSRRIS 340
              +  +   R+I 
Sbjct: 391 PEHK--VNAVRKID 402


>gi|150377511|ref|YP_001314106.1| phage integrase family protein [Sinorhizobium medicae WSM419]
 gi|150032058|gb|ABR64173.1| phage integrase family protein [Sinorhizobium medicae WSM419]
          Length = 330

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 41/323 (12%), Positives = 91/323 (28%), Gaps = 46/323 (14%)

Query: 67  KPTTLKWLISEYRKSA--HWGSLAVNSRISFESYFDQIIRKSGD---FDYRKITTKHIRS 121
           K T    LI  +           + ++   +   F  +IR +G        K+T + + +
Sbjct: 2   KATNFPALIQRFFTDRLCTQMEASQHTIAGYRDTFRLLIRYAGSRCGKPPTKLTIEDLDA 61

Query: 122 GVES---------RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC--------LSVERP 164
            + +         R +T  +    L ++R  F++         +P         LS+   
Sbjct: 62  DLVADFLSHVETTRGNTARTRNARLAAIRSFFRY-----VAMTDPTWLLHCQRILSMPSK 116

Query: 165 KRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220
           +     +     +++             G +        L +GLR S+      + +   
Sbjct: 117 RYVKRSVTFLDAQEIAALLVAPDRTTWVGRRDHALLLLALQTGLRASELISLRCKDVVLG 176

Query: 221 IF-SIK-TQKTGTIITVELPDGFMKLLAMTP----IGKETFFINNDKQKMNATQFSIWFK 274
               I+   K     +  L     KL+              F +   ++++        +
Sbjct: 177 AGAHIRCVGKGRKERSTPLRRDTAKLIQGWIGERRDSDSPLFPSIRGERLSRDALEHLVR 236

Query: 275 AKATKAGVNK--------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
                A            + H +R  +A      G     +    G ++V+  + Y    
Sbjct: 237 KHCLTASRTCPSLASKRVTPHTLRHSTAMELLHHGVDQSVIALWLGHESVETTQIYIHAD 296

Query: 327 DR-IRLGIKNSRRISSVVDSDDP 348
            R     +    R  +      P
Sbjct: 297 MRLKEKALSQVARPEAHPGRYRP 319


>gi|237713928|ref|ZP_04544409.1| transposase [Bacteroides sp. D1]
 gi|262409164|ref|ZP_06085708.1| transposase [Bacteroides sp. 2_1_22]
 gi|294646705|ref|ZP_06724329.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294807190|ref|ZP_06766005.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
 gi|229446084|gb|EEO51875.1| transposase [Bacteroides sp. D1]
 gi|262352911|gb|EEZ02007.1| transposase [Bacteroides sp. 2_1_22]
 gi|292637945|gb|EFF56339.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294445613|gb|EFG14265.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
          Length = 406

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 48/279 (17%), Positives = 85/279 (30%), Gaps = 39/279 (13%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVESRKHTPSSAIQFLTSMRV 142
            +A   + +  S    I R   D    ++     +     + S   + ++   +L ++R 
Sbjct: 132 GMAAAYKSTRSSLAKFISR--PDVRMSEVDLAFVRRYEDFLYSNGASGNTVSYYLRNLRS 189

Query: 143 LFKWAVRQEY----------VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
           L+  AV   Y              P  +V+R           ++ DMQ       E    
Sbjct: 190 LYNQAVTDGYHPRGEYPFAKAQTRPAKTVKR---------ALSRTDMQNLADLNLENEPE 240

Query: 193 ----RLAFEFLLYS-GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
               R  + F  Y+ G+   D        + N + +    K+  +I + +      L+  
Sbjct: 241 LEFTRDLYLFSFYAQGMAFVDIVLLKKTDICNGVLTYSRHKSKQLIRIVVTPQMQGLIDK 300

Query: 248 TPIGKETFFIN-----NDKQKMNATQFSIW---FKAKATKAGV--NKSAHGVRKFSATIS 297
                E  F           K             K  A  A +    + +  R   AT++
Sbjct: 301 YKTENEYLFPIISGEYASGYKQYRLALGRINRHLKKIAVVADIEVPLTTYTARHTWATLA 360

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
            D GA    + A  G  + +    Y K  D   L   NS
Sbjct: 361 RDYGAPISVISAGLGHTSEEMTRVYLKDFDVFMLNQVNS 399


>gi|296162870|ref|ZP_06845651.1| integrase family protein [Burkholderia sp. Ch1-1]
 gi|295886907|gb|EFG66744.1| integrase family protein [Burkholderia sp. Ch1-1]
          Length = 417

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 43/274 (15%), Positives = 92/274 (33%), Gaps = 24/274 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRK---SGDFDYRKITTKHIRSGVESRK---HTPSSAIQFLT 138
             LA  +R        +++      G  D   I  +H+R     +      P++A   + 
Sbjct: 136 RGLAPKTRSIALRIVGRLLTARFGKGAVDVAAIKPEHVRRFFAGQAKLYSKPANAGSVVA 195

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKR--KTEGIRPWTKEDMQQF-KSFWSEGSQPRLA 195
           S+R  F++      +      +V  P     +   +  T E++++  +S   +G   R A
Sbjct: 196 SLRGYFRYRASLGDLVHGLIGAVSYPVNWSLSSLPKSLTAEEVERLIRSLDQQGRSMRRA 255

Query: 196 FEF---LLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAM--- 247
                  L  GLR  +  R  +  +        ++  K      + LP    + +A    
Sbjct: 256 DAIVRCALDLGLRSGEIARLSLDDIDWQAGTLVLRHTKGRREDMLPLPATTGEAIAAYLE 315

Query: 248 ---TPIGKETFFINN---DKQKMNATQFSIWFKAKATKAGVNKS-AHGVRKFSATISADA 300
                      F+ +     Q           +   T+AG+  + +H +R   A     +
Sbjct: 316 QERPKTSNRAIFVRHIAPRDQPAGTDLVRKTIRQAFTRAGLPYTRSHLLRHTMANRLLAS 375

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIK 334
           G++  E+      ++++    Y K   R  + + 
Sbjct: 376 GSSLKEVADVLRHRSLNTTLIYAKLDSRKLVEVA 409


>gi|17987590|ref|NP_540224.1| integrase [Brucella melitensis bv. 1 str. 16M]
 gi|260563689|ref|ZP_05834175.1| phage integrase [Brucella melitensis bv. 1 str. 16M]
 gi|17983297|gb|AAL52488.1| integrase [Brucella melitensis bv. 1 str. 16M]
 gi|260153705|gb|EEW88797.1| phage integrase [Brucella melitensis bv. 1 str. 16M]
          Length = 308

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 80/239 (33%), Gaps = 12/239 (5%)

Query: 93  ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEY 152
            SF    D+I++ +    + +     I   +  R ++ ++  + + ++  L + A +   
Sbjct: 63  RSFLGEIDEILKGARFSGFDQEMLDSIIGTLRERGNSNATINRKMAALSKLLRKAHKMGD 122

Query: 153 VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL-YSGLRCSDSCR 211
           +  N    + R K +   IR   +E+ ++  +      +        L  +G R  ++  
Sbjct: 123 I-FNLPEFI-RQKERVGRIRFLEQEEEKRLFAAIKSRCEDSYRLSVFLVNTGCRLGEAIG 180

Query: 212 AGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI 271
                +Q    +    K+    TV L     K   + P  +    +      +N  +F  
Sbjct: 181 LTWNDIQEQRVTFWVTKSNRSRTVPLTRRARKASHI-PRER----LKGPFSMLNQVRFRQ 235

Query: 272 WFKAKATKAGVNKS----AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            +     + G+        H +R   A+     G     +    G +T+     Y   A
Sbjct: 236 IWNEAKAEVGLGADDQIVPHILRHTCASRLVRGGIDIRRVQMWLGHQTLQMTMRYAHLA 294


>gi|11138332|gb|AAG31327.1|AF182207_1 ORF 427 [Lactobacillus phage mv4]
 gi|684925|gb|AAC48859.1| recombinase [Lactobacillus phage mv4]
 gi|1093667|prf||2104328C recombinase
          Length = 427

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 62/318 (19%), Positives = 108/318 (33%), Gaps = 36/318 (11%)

Query: 49  SALTGSTPKREYINSPRKKPTTLKW--LISEYRKSAHWGSLAVNSRISFESYFDQIIRKS 106
           +A      +     +P+K  T   W      Y+      S A  +  S+  +   I    
Sbjct: 106 AAYNKLKAQGLAAKAPKKATTDEGWSVWFDSYKGGVKESS-ANKTLTSYRVH---IKPAF 161

Query: 107 GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
           GD     I T  ++    +      +    +  +  LF++A R +Y   NP   +  PK 
Sbjct: 162 GDKMISSIKTATVQLWANNLATKLVNYKVVVRLLGTLFEFAKRLDYCKDNPVKQIIMPKA 221

Query: 167 KTEGIRPWTK-----EDMQQFKSFWSE-GSQPRLAFEFLLYSGLRCSDSCRAG------- 213
            +   R  +      +++QQF     E GS+  + F  L  +GLR   S   G       
Sbjct: 222 TSRPRRDISTNYYNRDELQQFLQAAKEVGSRTYVFFLLLATTGLRKRRSTSPGLVGHRLR 281

Query: 214 ----------VQHLQNNIFSIKTQKTGTII-TVELPDGFMKLLAMTPIG-KETFFINNDK 261
                     + +     + I+  KT   I TV L D    +L           F   D 
Sbjct: 282 SKEKSPSLKTLAYGLGGKYGIQPPKTKAGIRTVPLTDQMAAVLKDYHSDLCPHLFHTLDG 341

Query: 262 QKMNATQFSIWFKA-KATKAGVNK-SAHGVRKFSATIS--ADAGATAHELMATYGWKTVD 317
             +  ++   W +A       + +   HG R   A++   AD      ++ A  G +++D
Sbjct: 342 DYLRLSKPDQWLQAVYKHDPDLRQIRIHGFRHTFASLLITADPSIKPTDVQAILGHESID 401

Query: 318 QA-ETYTKGADRIRLGIK 334
              E Y       R  ++
Sbjct: 402 ITMEIYMHATQEGRRNVE 419


>gi|114562815|ref|YP_750328.1| phage integrase family protein [Shewanella frigidimarina NCIMB 400]
 gi|114334108|gb|ABI71490.1| phage integrase family protein [Shewanella frigidimarina NCIMB 400]
          Length = 403

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 52/328 (15%), Positives = 106/328 (32%), Gaps = 25/328 (7%)

Query: 21  IIYYFRKGHGRRIRLPYPH-----ESTFIPAYMSALTGSTPKREYINS--PRKKPTTLKW 73
             + FR   GR     YP         F+P   +AL   T  R Y      R+    +++
Sbjct: 42  YRFRFRSSVGRLTLGRYPDVKLSEARKFVPELRNALANDTDPRVYWKQRNTRRGKVNVRY 101

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR-KHTPS 131
              ++       SL   +  +++S F   +     D     IT        + + K +  
Sbjct: 102 CCEQFLL-KQGSSLKPGTIATYQSCFRVHLFDAFDDRLVDDITLGEWIDFFDEKSKVSRV 160

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSV---ERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           ++   L  ++ +  W+VR++ +     L +   +     T G R  T  +  +      +
Sbjct: 161 TSGAILKQLKTILNWSVRRQLIKSVDVLQLRVSDIGSASTVGSRVLTVLECGRIWRELDK 220

Query: 189 GSQPRLA---FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT----QKTGTIITVELPDGF 241
               R      +  + +G R S+  ++       +           KT   I   +    
Sbjct: 221 TRATRTITNSIKACMMTGARVSELLKSSRADFDLDSMVWTVPVINSKTNQPIRRPISPAL 280

Query: 242 MKLLA---MTPIGKETF-FINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATI 296
           ++LL         + TF   N+ K+ +     +   +    +  + +   H  R+  +T 
Sbjct: 281 LELLQEQWSLHRSQWTFPAPNDFKRPVGIASVNKLVREIRPRVDIPDWRLHDFRRTISTR 340

Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324
            ++ G   H      G         Y K
Sbjct: 341 LSELGVLPHVTEKMLGHVLGGVMAVYNK 368


>gi|77918157|ref|YP_355972.1| integrase [Pelobacter carbinolicus DSM 2380]
 gi|77544240|gb|ABA87802.1| integrase [Pelobacter carbinolicus DSM 2380]
          Length = 330

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 47/308 (15%), Positives = 95/308 (30%), Gaps = 65/308 (21%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG-DFDYRKITTKHIRSGVESR----KH 128
           L+ + R+   +   A  +  ++  +  + IR  G  +    +  K I + +       K 
Sbjct: 15  LMDQVREVLRYHHYAYRTEQTYCDWIVRYIRFFGAKYHPCDMGKKEIEAFLSHLATDCKV 74

Query: 129 TPSSAIQFLTSMRVLFKWAVRQ---EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           + ++  Q L ++  L++  + Q   E +       ++  K         ++ ++QQ  + 
Sbjct: 75  SANTQRQALNAIVFLYRQVLDQPVDELIEH-----IKARK-NRRPQVVLSQSEVQQVLAR 128

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELP----D 239
            + G+   L  + L   GLR  +  R  VQ L    ++  ++  K G   T   P    +
Sbjct: 129 MT-GTH-LLMAQLLYGGGLRWMECIRLRVQDLDFERDLIYVRDGKGGKDRTTTFPASIKN 186

Query: 240 GFMKLLAM---------TPIGKETFFINN------------------------------- 259
           G    +                  +  N                                
Sbjct: 187 GLQTHVDRIGQLHEQDLAKGYGSVYLPNALDIKYPNAEKEFAWQYVFPSKRLSTDPRSGK 246

Query: 260 -DKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTV 316
             +  +  +      K    +AG++K    H  R   AT   + G     +    G   V
Sbjct: 247 IRRHHVLESGLQKAVKVAVNRAGIHKRVGCHTFRHSFATHLLENGVNIRVVQELMGHADV 306

Query: 317 DQAETYTK 324
              E YT 
Sbjct: 307 KTTEIYTH 314


>gi|30063898|ref|NP_838069.1| putative integrase [Shigella flexneri 2a str. 2457T]
 gi|114330695|ref|YP_746917.1| phage integrase family protein [Nitrosomonas eutropha C91]
 gi|114332212|ref|YP_748434.1| phage integrase family protein [Nitrosomonas eutropha C91]
 gi|126640728|ref|YP_001083712.1| phage integrase family protein [Acinetobacter baumannii ATCC 17978]
 gi|260557740|ref|ZP_05829954.1| phage integrase [Acinetobacter baumannii ATCC 19606]
 gi|296104179|ref|YP_003614325.1| putative integrase [Enterobacter cloacae subsp. cloacae ATCC 13047]
 gi|309783611|ref|ZP_07678261.1| phage integrase family protein [Shigella dysenteriae 1617]
 gi|30042153|gb|AAP17879.1| putative integrase [Shigella flexneri 2a str. 2457T]
 gi|114307709|gb|ABI58952.1| phage integrase family protein [Nitrosomonas eutropha C91]
 gi|114309226|gb|ABI60469.1| phage integrase family protein [Nitrosomonas eutropha C91]
 gi|126386612|gb|ABO11110.1| phage integrase family protein [Acinetobacter baumannii ATCC 17978]
 gi|260408913|gb|EEX02217.1| phage integrase [Acinetobacter baumannii ATCC 19606]
 gi|295058638|gb|ADF63376.1| putative integrase [Enterobacter cloacae subsp. cloacae ATCC 13047]
 gi|308928507|gb|EFP73964.1| phage integrase family protein [Shigella dysenteriae 1617]
 gi|313650991|gb|EFS15391.1| phage integrase family protein [Shigella flexneri 2a str. 2457T]
          Length = 400

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 49/309 (15%), Positives = 105/309 (33%), Gaps = 26/309 (8%)

Query: 49  SALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSG 107
           +A      ++    +  K   T      ++ +      +A ++R    S +++ +  K  
Sbjct: 77  AAGKSPAKEKARDKARVKDAETFGAWAEKWLRGYQ---MADSTRDMRRSVYERELKPKFS 133

Query: 108 DFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE--R 163
           +    +IT + +R+  ++   +  P++A+     +  +F+WA+ +     NP   V    
Sbjct: 134 NQKLVEITHEDLRALADAIVERGAPATAVHVREIVLQVFRWAIERGQKVENPAELVRPTS 193

Query: 164 PKRKTEGIRPWTKEDMQ---QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220
             R     R  T E++    Q+          R A + LL + +R S+   A    +  +
Sbjct: 194 IARFEPRDRALTPEEIGLMYQYMERVGTSPTNRAAAKLLLLTMVRKSELTNATWSEINFS 253

Query: 221 IFSIK----TQKTGTIITVELPDGFMKL--LAMTPIGKETFFINNDKQ---KMNATQFSI 271
                      K      V L    + +     T  G   F + +       M+A   + 
Sbjct: 254 EALWTIPKERMKRRNPHLVFLSQQALDIFIAMKTFAGGSDFVLPSRYDSDAPMSAATLNQ 313

Query: 272 WFK---AKATKAGVNKS---AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
                   A K G + +    H +R+ ++T+  +AG     +      +       Y K 
Sbjct: 314 VLTLTYKAAQKDGKSLTKFGPHDLRRTASTLLHEAGYNTDWIEKCLAHEQKGVRAVYNKA 373

Query: 326 ADRIRLGIK 334
             R +    
Sbjct: 374 EYREQRAAM 382


>gi|300854163|ref|YP_003779147.1| phage related integrase [Clostridium ljungdahlii DSM 13528]
 gi|300434278|gb|ADK14045.1| phage related integrase [Clostridium ljungdahlii DSM 13528]
          Length = 336

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 43/294 (14%), Positives = 85/294 (28%), Gaps = 43/294 (14%)

Query: 71  LKWLISEYRKSA--HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----------K 117
             + ++ Y  +        + N+  S+   F    R    F   KI              
Sbjct: 6   FSYYVTRYFTNYLDREAGFSPNTIKSYRDTFILFFRYIELFRICKINKLNMDILSADNVN 65

Query: 118 HIRSGVES-RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC---LSVERPKRKTEGIRP 173
              + +E  R+ T SS  Q L +++    + +R+     + C   L +   K   + I  
Sbjct: 66  DFLNWIEKERQCTVSSRNQRLAALKSFCIYVIRENPEKSDICQQVLGIRAKKATQKSIGY 125

Query: 174 WTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK---- 225
              E +        +    G +       L  +G R  +     +  +    F I     
Sbjct: 126 LNIEAISYLLKMPDKTSDRGIRDLALLALLYETGCRVQEIIDLKIGDIS---FRIPNTVA 182

Query: 226 -TQKTGTIITVELPDGFMKLLA------MTPIGKETFFINNDKQKMNATQFSIWFKAKAT 278
            T K   I  V +     +++            +E  F+N     ++ +  +        
Sbjct: 183 LTGKGNKIRVVPISQQVSEIIKNYLSISTRHNFEENIFVNRLGNPLSRSGVAYILNKYGD 242

Query: 279 KAGVNK--------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            A  N+          H +R   A    +       +    G  +V   E Y +
Sbjct: 243 MARKNRLDLYPYKLHPHILRHSKAMHLLENNVNLIYIRDFLGHSSVTTTEIYAR 296


>gi|254498879|ref|ZP_05111584.1| putative integrase/recombinase [Legionella drancourtii LLAP12]
 gi|254351864|gb|EET10694.1| putative integrase/recombinase [Legionella drancourtii LLAP12]
          Length = 335

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 41/283 (14%), Positives = 82/283 (28%), Gaps = 47/283 (16%)

Query: 85  GSLAVNSRISFESYFD---QIIRKSGDFDYRKIT--------TKHIRSGVESRKH-TPSS 132
            +L+ N+  ++   F    +  R   +    K+          +     +E  +H TP +
Sbjct: 22  RNLSPNTIKAYRDVFILLLRFCRDVKNIPIEKLQLEQVDVVLIEAFLDHIEKDRHCTPRT 81

Query: 133 AIQFLTSMRVLFKW--------AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
               LT++   F++         ++ + +   P     RP+         +K+ +    +
Sbjct: 82  LNHRLTTLHAFFRYIQVEDPLYLLQCQRILAIPLRRFVRPEVSY-----LSKDHLAALLA 136

Query: 185 FW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN--IFSIKTQKTGTIITVELP 238
                  EG +  +    L  +G R  +     V  ++           K   I  V L 
Sbjct: 137 QPNLGKPEGRRDVVLLSTLYDTGARVQELIDLTVGDVRLKTPAQVRILGKGRKIRVVPLM 196

Query: 239 DGFMKLLA---------MTPIGKETFFINNDKQKMNATQFSIWFKAKAT---KAGVNK-- 284
           D    LL          +        F NN   K+     +   +       +A      
Sbjct: 197 DNTANLLQSYLHENNLLLPETFDYPLFRNNQGNKLTRVGVNYILQKYERLVREASPQYKQ 256

Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
             S H +R          G +   +    G   +   E Y + 
Sbjct: 257 RISPHTLRHTKGMHLLQGGVSLDIIRDFLGHVDIKTTEIYARA 299


>gi|296103065|ref|YP_003613211.1| hypothetical protein ECL_02721 [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295057524|gb|ADF62262.1| hypothetical protein ECL_02721 [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 430

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 51/345 (14%), Positives = 106/345 (30%), Gaps = 78/345 (22%)

Query: 75  ISEYRKSAHWGSL-----AVNSRISFESYFDQIIRKSGDFDYR----------------- 112
           I+    +  W  L     + N+   +ES    ++ + G+                     
Sbjct: 82  ITVLELTERWSELKRMEISSNTMSRYESIIKNMLPRIGENKMVSAVTTEDLLYVRKELLT 141

Query: 113 --KITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170
              +  K  R+ V+ RK   S+   ++  M  +F++     Y   NP   + R ++  + 
Sbjct: 142 GFHVMKKDHRTQVKGRKS--STVNNYMMLMAEIFQFGADNGYAKENPFSGINRLRKAKDE 199

Query: 171 IRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT- 229
             P T ++  +F        Q R  +   +Y+G+R  + C    + +     +I  ++  
Sbjct: 200 PDPLTTDEFIRFIQACG-HQQMRNLWTVAVYTGMRHGELCGLAWEDIDLTAGTITVKRNL 258

Query: 230 -------------GTIITV----ELPDGFMKLLAMTPIGKE------------------T 254
                        GT   +       D       +T +G++                  T
Sbjct: 259 TQTYEFTLPKTEAGTDRVIYLIQPAIDALRDQAQLTRLGRQHEVEVNLREYGQSVIHPCT 318

Query: 255 FFIN--------NDKQKMNATQFSIWFKAKATKAGVNKS-AHGVRKFSATISADAGATAH 305
           F  +                   +  +     +AG+    A+  R   A  S  AGA  +
Sbjct: 319 FVFSPQCVKRGPRTGYHYAVNSINKIWAPIIKRAGIRYRNAYQSRHTYACWSLSAGANPN 378

Query: 306 ELMATYGWKTVDQA-ETYT-----KGADRIRLGIKNSRRISSVVD 344
            +    G        + Y      K A+++ L  +   R +  + 
Sbjct: 379 FIATQMGHTDAQMVYKVYGKWMSEKSAEQVSLLNQALSRFAPSLP 423


>gi|239906093|ref|YP_002952832.1| site-specific recombinase [Desulfovibrio magneticus RS-1]
 gi|239795957|dbj|BAH74946.1| site-specific recombinase [Desulfovibrio magneticus RS-1]
          Length = 346

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 70/225 (31%), Gaps = 22/225 (9%)

Query: 111 YRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLF-----KWAVRQEYVAINPCLSVERPK 165
            R       R   E     P +     + +  +F      W +       NP     +PK
Sbjct: 113 IRTKDIAEFRKVREEGGAGPDTVRLDFSLISRVFVIAKSDWGMES---LSNPVEHATKPK 169

Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFS 223
                 R    ++ ++  +        R   E  + + +R S+         +L+     
Sbjct: 170 LPGGRTRRLVGDEEKRLLAACQPPEF-RAIVELAIATAMRRSEILGVEWDSVNLKQQTIH 228

Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM--NATQFSIWFKAKATKAG 281
           +   K  +  TV L +  +++L+  P        N   +    +      W     T AG
Sbjct: 229 LADTKNSSARTVPLDERAVEILSDLPR-------NISGKIWDIHEDTIDKWMTKACTAAG 281

Query: 282 V-NKSAHGVRKFSATISADA-GATAHELMATYGWKTVDQAETYTK 324
           +     H +R  + +   ++   +  E+    G K++   + Y  
Sbjct: 282 IVGLRFHDLRHEATSRLFESTDLSDLEISEITGHKSLQSLKRYAH 326


>gi|88857306|ref|ZP_01131949.1| site-specific recombinase IntI4 [Pseudoalteromonas tunicata D2]
 gi|88859550|ref|ZP_01134190.1| site-specific recombinase IntI4 [Pseudoalteromonas tunicata D2]
 gi|88818567|gb|EAR28382.1| site-specific recombinase IntI4 [Pseudoalteromonas tunicata D2]
 gi|88820503|gb|EAR30315.1| site-specific recombinase IntI4 [Pseudoalteromonas tunicata D2]
          Length = 323

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 47/294 (15%), Positives = 92/294 (31%), Gaps = 59/294 (20%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF----LTSM 140
              A  +  ++  +    I        + +  +H+   +         A+Q     L ++
Sbjct: 18  RRYAKRTVETYLHWIRFYILFHKKQHPKDLAEQHVEQFLTYLAVNRHVAVQTQALALNAL 77

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200
             L+K  + Q  +++N  L+  +  +  +     TK+++++       G    L  + L 
Sbjct: 78  SFLYKE-ILQRPLSLN--LNFNQSSKPRKLPVVLTKDEIKRLLREIDPGY--LLLAQLLY 132

Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKT--QKTGTIITVELPDGFMKLLAMT---------- 248
            SGLR  ++ R  V  +  +  SI     K G    V L    +  L             
Sbjct: 133 GSGLRLMEAVRLRVAAIDFDYLSIMVWHGKGGKHRRVTLAPELVPALKRQTSLVEAYYQQ 192

Query: 249 ---------------------------------PIGKETFFINN---DKQKMNATQFSIW 272
                                            P GK +   ++    +  ++ +     
Sbjct: 193 DLETADYAGVWLPFALARKYPSAPKELGWQYLFPSGKLSIDPDSTLLRRHHIDESGLQKA 252

Query: 273 FKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            K+ + KA + K  S H +R   AT    AG     +    G   V   + YT 
Sbjct: 253 VKSASRKAAIGKHVSCHTLRHSFATHLLQAGMDIRTVQEQLGHSDVKTTQIYTH 306


>gi|283788455|ref|YP_003368320.1| putative integrase [Citrobacter rodentium ICC168]
 gi|282951909|emb|CBG91627.1| putative integrase [Citrobacter rodentium ICC168]
          Length = 546

 Score = 83.9 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 58/356 (16%), Positives = 105/356 (29%), Gaps = 84/356 (23%)

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFE---SYFDQIIRKSGDFD 110
            + K+E  +   +   TL++L+ +Y K  +  +    +    +   S   +I    G  D
Sbjct: 185 QSAKQEVESVEPRPAVTLRFLVEQYEKE-NVQNWKPATLKENQASHSTLIEIFDYLGLTD 243

Query: 111 YRKITTKHIRSGVESRKHTPSS----------------------------AIQFLTSMRV 142
              IT   +    +  +  P +                              ++L  M  
Sbjct: 244 LTAITRADMLEVRDVLQKIPKNRKQRFKDVSLVDLLASGESFECMDVVTINNKYLVKMAA 303

Query: 143 LFKWAVRQEYVAINPCLSVE---RPKRKTEGIRPWTKEDMQQFKSFWSEGSQ-------P 192
           LFKWAVR + +  N    +E    PK+ +E  + ++   + Q        +Q        
Sbjct: 304 LFKWAVRNDLLIKNLTEGLELKVPPKKASEARKAFSVGQVCQLIDAAKRYAQKPSGKPYH 363

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNI-----FSI---------KTQKTG-TIITVEL 237
                    +G R ++  +  V+ ++          I         K+ K   +   V L
Sbjct: 364 YFVVTLAAITGARLNEVAQIQVRDVRITEAGTAYIHINEDTSTLPGKSIKNPYSERRVPL 423

Query: 238 PD-----------GFMKLLAMTPIGKETFFINNDKQKMNATQFS----IWF------KAK 276
            D             ++            F   D  K+    +      WF      K  
Sbjct: 424 VDGAYGFALTDFMALVEARRSAGGEDAMVF---DGLKLMKNGYGEQVSKWFNRTLLPKVV 480

Query: 277 ATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRL 331
           A + G+    H  R   AT     G       A  G  +     + Y K  +  RL
Sbjct: 481 ADREGLA--FHSFRHTVATQLKQHGVELAYAQAILGHSSGSITYDRYAKEVEVDRL 534


>gi|154498965|ref|ZP_02037343.1| hypothetical protein BACCAP_02957 [Bacteroides capillosus ATCC
           29799]
 gi|150271805|gb|EDM99031.1| hypothetical protein BACCAP_02957 [Bacteroides capillosus ATCC
           29799]
          Length = 397

 Score = 83.9 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 45/289 (15%), Positives = 90/289 (31%), Gaps = 55/289 (19%)

Query: 85  GSLAVNSRISFE-SYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--TPSSAIQFLTSMR 141
           G LA N+  ++   Y   I    G      +   H +  +         S+  Q   +M 
Sbjct: 81  GDLAPNTLRNYRERYAHNIQPVIGRMAISSVKPMHCKKVLLQMDAIYAGSTIRQAYITMG 140

Query: 142 VLFKWAVRQEYVAINPCLSVE--RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199
            +FK A   + +A +P   V   +P R  + I+  T+++   F     + S     +  +
Sbjct: 141 TMFKAAKMNDVIAKHPMDGVRYTKPVRAVDDIKFLTRQEQSLFLQAAKK-SHNYYQYALI 199

Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------------------GTIITVELPDGF 241
           L +GLR  +        +     ++   KT                   +  T+ L D  
Sbjct: 200 LETGLRTGELIGLTWDAVDLEKRTLTVNKTLEFRHGLHTWRAGPPKTQHSYRTIPLTDRA 259

Query: 242 MKLLA-----------------------------MTPIGKETFFIN-NDKQKMNATQFSI 271
            ++L                                 + ++  FIN    +    + +  
Sbjct: 260 CEILQSVWNSRDTRKESPLLSQTLEYIDRRTGSIAKLVMRDLVFINWRTGEPAKNSSYDT 319

Query: 272 WFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
                  +AG+ +   H +R   AT + ++G     L    G  ++   
Sbjct: 320 HLYKICDEAGIKRFCMHALRHTYATRAIESGIQPKVLQKLLGHASIKTT 368


>gi|323156764|gb|EFZ42900.1| prophage lambda integrase [Escherichia coli EPECa14]
          Length = 305

 Score = 83.9 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 52/304 (17%), Positives = 100/304 (32%), Gaps = 33/304 (10%)

Query: 59  EYINSPRKKPTTLKWLISEYRKSAHWG----SLAVNSRISFESYFDQIIRKSGDFDYRKI 114
           E  ++ +++   LK  +  Y K          +A  +          ++ + G+   +++
Sbjct: 6   ESPSATKRRGIRLKAWVDRYLKIQDTRLKNGDIAATTHKEKARMAAYLVSRLGNHPLKEL 65

Query: 115 TTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAI--NPCLSVERPKRKTEG 170
             +     ++    K   S+A         ++K A     V    NP  +  +P  K   
Sbjct: 66  EVRDFALILDEWLDKDMVSTARVNRGLWVDIYKEAQHAGEVPPGWNPPEATRKPIPKVTR 125

Query: 171 IRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
            R  T ED Q+  +   E    R A    + +G R  D C      + N    I   KTG
Sbjct: 126 AR-LTLEDWQKIYNATPEKHFIRNAMLLAIVTGQRRDDICHMRFSDVWNEHLHITQGKTG 184

Query: 231 TIITVELPDG-------FMKLLA-MTPIGKETFFINNDK----QKMNATQFSIWFKAKAT 278
             + + L            +++          + I++      + M+    S +F     
Sbjct: 185 MRLALPLTLRCDAIGITLKEVIDGCRDRILSPYLIHSRHQKQPKPMSKDNLSDYFAKARD 244

Query: 279 KAGV-------NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY--TKGADRI 329
            AG+         + H  R  S  +    G     L    G K     + Y  T+G + +
Sbjct: 245 LAGITPPAGKTPPTFHEQRSLSERLYRTQGIDTKTL---LGHKVQATTDRYNDTRGQEWV 301

Query: 330 RLGI 333
           +L +
Sbjct: 302 KLVV 305


>gi|325922658|ref|ZP_08184403.1| integron integrase [Xanthomonas gardneri ATCC 19865]
 gi|325546862|gb|EGD17971.1| integron integrase [Xanthomonas gardneri ATCC 19865]
          Length = 298

 Score = 83.9 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 41/278 (14%), Positives = 79/278 (28%), Gaps = 60/278 (21%)

Query: 101 QIIRKSGDFDYRKITTKHIRSGVESRKH----TPSSAIQFLTSMRVLFKWAVRQEYVAIN 156
             I  SG     ++    + + +         +  +  Q L ++  L++  +R E     
Sbjct: 4   AFILASGKRHPAQMGQAEVEAFLTRLATDGQVSAGTQNQALAALLFLYREVLRIEL---- 59

Query: 157 P-CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ 215
           P   ++ R KR         + ++ +  +         L    L  SG+R  +  R  ++
Sbjct: 60  PWMENLVRAKRPRRIPVVLARAEVARLLAVLEGPCW--LMASLLYGSGMRLMECLRLRIK 117

Query: 216 HLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAM------------TPIGKETFFI---- 257
            +        ++  K G    V LP    + L                 G    F+    
Sbjct: 118 DVDAARGEIVVRDGKGGKDRRVPLPLSLREALQRQRERALVVHAADLAAGTGRVFLPHAL 177

Query: 258 -----------------------------NNDKQKMNATQFSIWFKAKATKAGVNKSA-- 286
                                           +  ++        +    +AG+ KSA  
Sbjct: 178 ARKYPNADAEPGWQYLFPSARQSRDPRSGRVGRHHVSEEVLQRAVQVARRRAGIAKSATC 237

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           H +R   AT   + G     +    G K V   + YT 
Sbjct: 238 HTLRHSFATHLLEDGHDIRTVQELLGHKDVATTQIYTH 275


>gi|304360798|ref|YP_003856919.1| gp41 [Mycobacterium phage Angelica]
 gi|302858382|gb|ADL71130.1| gp41 [Mycobacterium phage Angelica]
          Length = 362

 Score = 83.9 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 41/307 (13%), Positives = 86/307 (28%), Gaps = 29/307 (9%)

Query: 42  TFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-D 100
            F             +         +  TL   +  Y        +  ++   +E     
Sbjct: 39  EFKRMVEQLGAAKALEVIETTDAAARHYTLSEWLRHYLDHK--TGVEKSTIYDYEKVVAK 96

Query: 101 QIIRKSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINP 157
            I    G      +T   I   V++         +       +      AVR   +  NP
Sbjct: 97  DIDPALGPIPLAALTGDDIAKWVQALADRGLKGKTISNKHGFLSSALNAAVRAGRIPGNP 156

Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQH 216
                 P+ +   +   T+   +Q+       + P +   EFL+ SG R  +        
Sbjct: 157 AAGARLPRTEKAEMVFLTR---EQYAKLHDNITLPWQPLVEFLVASGARWGEVVALRPSD 213

Query: 217 LQNNIFSIKTQKTGTIIT------VELPDGF---------MKLLAMTPIGKETFFINNDK 261
           +  +  +++  +            +  P              +L       E  F N   
Sbjct: 214 VNRDASTVRISRASKRTYEKGSYALGAPKTLKSRRTINVDASVLGKLDYSGEYLFTNTVG 273

Query: 262 QKMNATQF-SIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVD- 317
             +    F +  ++    +AG++     H +R   A+    AG     +    G +++  
Sbjct: 274 NPVRHNNFHANVWQPALKRAGLDVKPRVHDLRHTCASWLIAAGVPLPAIRDHLGHESIKI 333

Query: 318 QAETYTK 324
             +TY  
Sbjct: 334 TVDTYGH 340


>gi|167623237|ref|YP_001673531.1| integrase family protein [Shewanella halifaxensis HAW-EB4]
 gi|167353259|gb|ABZ75872.1| integrase family protein [Shewanella halifaxensis HAW-EB4]
          Length = 341

 Score = 83.9 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 38/263 (14%), Positives = 70/263 (26%), Gaps = 28/263 (10%)

Query: 83  HWGSLA--VNSRISFE-SYFDQIIRKSGDFDYRKITTKHIRSGVESR------------- 126
            W  L     ++        D I    GD    KIT     +  + R             
Sbjct: 70  RWHDLHGQQLTKPELRLRKLDLICNGMGDPIASKITVNDFANYRQMRLDGEIEDAQGKMN 129

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           K  P++       +  +F    +   +   NP   + + K +   +     E++    + 
Sbjct: 130 KVKPNTINHEHAYLNAVFSELKKLGEWKLPNPLDGISQFKIEDTELAFLYPEEIPIVLTE 189

Query: 186 WSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
            +      L       L +G R S++       + +N  +    K     TV +      
Sbjct: 190 CANAEYEHLTTIVLICLATGCRWSEAEGLRGSQIAHNRITFVKTKGKKNRTVPIAKELAD 249

Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGAT 303
            +   P  +   F      +     F    K         +  H +R   A+     G  
Sbjct: 250 KI---PRARGPLF------RPCRKSFERAIKRTKLNFPDRQMTHILRHTFASHFMMNGGN 300

Query: 304 AHELMATYGWKTVDQAETYTKGA 326
              L    G   +     Y   A
Sbjct: 301 ILVLKQILGHSDIKDTMRYAHFA 323


>gi|315180966|gb|ADT87880.1| phage integrase family protein [Vibrio furnissii NCTC 11218]
          Length = 395

 Score = 83.9 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 47/303 (15%), Positives = 100/303 (33%), Gaps = 28/303 (9%)

Query: 53  GSTPKREYINSPRKKPT--TLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDF 109
           G +P +E      +     T      ++ +      +A ++R    S +  ++  K G+ 
Sbjct: 79  GKSPAKEKARDKARVKGAETFSAWAEKWLRGYQ---MADSTRDMRRSVYTRELETKFGNQ 135

Query: 110 DYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167
              +IT + +R+  ++   +  P++A+     +  +++WA  +     NP   V      
Sbjct: 136 KLTEITHEDLRALTDAIVERGAPATAVHAREIVLQVYRWATERGQKVENPADLVRPASIA 195

Query: 168 T--EGIRPWTKEDMQQFKSFW-SEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222
                 R    E+++    +    G+ P  R A + LL + +R S+   A    +  +  
Sbjct: 196 RFEPRDRTLMPEEIRIMYQYMGRIGTSPSIRAAVKLLLLTMVRKSELTNATWSEINFSEA 255

Query: 223 SIK----TQKTGTIITVELPDGFMKLLAMTPI---GKETFFINNDKQ--KMNATQFSIWF 273
                    K      V L    M +L        G E    +       M++   +   
Sbjct: 256 LWTIPKERMKRRNPHLVFLSRQAMDILIALKTFSGGSEYVLPSRYDSDVPMSSATLNRVM 315

Query: 274 KAKATKAGVNKSA------HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
                 A            H +R+ ++T+  +AG     +      +       Y K   
Sbjct: 316 TMTYKLAQKEGQPLAKFGPHDLRRTASTLLHEAGYNTDWIEKCLAHEQKGVRAIYNKAEY 375

Query: 328 RIR 330
           R +
Sbjct: 376 REQ 378


>gi|316931849|ref|YP_004106831.1| integrase family protein [Rhodopseudomonas palustris DX-1]
 gi|315599563|gb|ADU42098.1| integrase family protein [Rhodopseudomonas palustris DX-1]
          Length = 323

 Score = 83.9 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 38/279 (13%), Positives = 87/279 (31%), Gaps = 33/279 (11%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDF--------DYRKITTKHIRSGVESRKH---TPSSA 133
             L+  +  ++     Q ++              + ++    +R+ + +R+       S 
Sbjct: 35  RRLSGKTLEAYARDVRQFLQFLAGHWGGEVTLGRFARLEATDVRAFMAARRADDIAGRSL 94

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
           ++ L  +R   ++  R+    +    SV  PK +    +P      ++         + R
Sbjct: 95  MRALAGLRSFGRFLEREGKGRVGALASVRAPKIRKSLPKPLPIAAAKRLADADERAGEER 154

Query: 194 ---------LAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVEL--- 237
                         L  SGLR S++     + +    + +   +  +   T +   L   
Sbjct: 155 ETWVLIRDAAVMALLYGSGLRISEALGLKRRDVPAPGKGDTLIVHGKGNKTRMVPVLQNV 214

Query: 238 PDGFMKLLAMTP---IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKF 292
            +   +  A  P         F+      ++     +  +      G+    + H +R  
Sbjct: 215 LEQIAEYAAACPYNLPPDGPMFVGARGGPLSPRIIQLAMERLRGGLGLPDSATPHALRHS 274

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            AT     G     +    G  ++   + YT G D  RL
Sbjct: 275 FATHLLSRGGDLRAIQELLGHASLSTTQVYT-GIDTERL 312


>gi|256855105|ref|ZP_05560466.1| site-specific recombinase [Enterococcus faecalis T8]
 gi|256709618|gb|EEU24665.1| site-specific recombinase [Enterococcus faecalis T8]
          Length = 373

 Score = 83.9 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 57/343 (16%), Positives = 104/343 (30%), Gaps = 38/343 (11%)

Query: 19  GKIIYYFRKG---HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75
           G   YYF+ G      +             A   A T +  K +   S      T K  +
Sbjct: 15  GTYSYYFKAGVDLATGKPFQKRKRGFPTAKAAHEARTKALQKIQDRGSVSYTQMTFKQFM 74

Query: 76  SEYRKSAHWGSLAVNSRISFES-YFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSS 132
                   +               F++ I++ G      IT + I        +K++ S 
Sbjct: 75  EIIYI-PDFNQRTAKDIEGRNRMIFNEFIQRFGSKKPNNITIQDITIYKNELIQKYSSSY 133

Query: 133 AIQFLTSMRVLFKWAVRQEYVA-INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
             + +  ++ +FK A     +   N    V   K +   +  WTK + +QF +     S 
Sbjct: 134 GRRKMAMLKTIFKSAQNYGLIHGDNVMEKVPLIKIEKAEVHYWTKSEFEQFINSLDTSSY 193

Query: 192 P----RLAFEFLLYSGLRCSDSCRAGVQHLQ-----------------NNIFSIKTQKT- 229
                        ++G+R ++      + +                  +N       KT 
Sbjct: 194 MQQFIYTTIWLYFFTGMRVNEGTALYWEDVDFGKKLLSIHHNLHYLNIDNWERSTKLKTE 253

Query: 230 GTIITVELPDGFMKLL-----AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284
            +  T+ L D  + +L           K  F ++ D        F+   K  + KAGV  
Sbjct: 254 SSKRTIGLDDNTLDVLQKWKERQQKHSKIKFVLSYDGNPFPKRSFAYQLKKYSEKAGVPY 313

Query: 285 -SAHGVRKFSATISADAGATAH-ELMATYGWKTVDQA-ETYTK 324
               G+R   A++  +   T    +    G   V      Y+ 
Sbjct: 314 IKPKGLRHSHASLLINEWNTTPLAIQKRLGHSDVQTTLSVYSH 356


>gi|253584229|ref|ZP_04861427.1| site-specific recombinase [Fusobacterium varium ATCC 27725]
 gi|251834801|gb|EES63364.1| site-specific recombinase [Fusobacterium varium ATCC 27725]
          Length = 333

 Score = 83.9 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 42/275 (15%), Positives = 85/275 (30%), Gaps = 42/275 (15%)

Query: 88  AVNSRISFESYF-----------DQIIRKSGDFDYRKITTKHIRSGV----ESRKHTPSS 132
           +  +   +  Y            + I         + I  + +   +    E RK   +S
Sbjct: 33  SQKTLKDYMFYLKDFLNFVYEGEEGIRADELIELMKDIEKQDVEDYIGYLVEERKLKKTS 92

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW--TKEDMQQFKSFWSEGS 190
             + ++S++ L+K   +  Y   NP   VE  K           + ED+++    +    
Sbjct: 93  INKIISSLKSLYKEMEKNGY--ENPFKYVELFKVSRNIDNVLKLSFEDIKKIIGQYKING 150

Query: 191 ----QPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTI---------ITV 235
               +       L Y+G+R  +      +H+  +   + IK ++T +          I V
Sbjct: 151 EKDYRNVNILYTLFYTGMRSQELINLKFKHILEREGSYYIKLEETKSGREQYKSVHNILV 210

Query: 236 ELPDGFMKLLAMTPIGKETFFINND--------KQKMNATQFSIWFKAKATKAGVNKSAH 287
           +    + + L       +                 +++        +      G + S H
Sbjct: 211 QRLKEYKEYLQALYNIDDVMIEEQYVFSSSVEKNTQLSYRALYDLVQNMGKLIGKDISPH 270

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
            VR   AT  +  GA   E+    G       E Y
Sbjct: 271 NVRHAVATELSINGADILEIRDFLGHADTRVTEVY 305


>gi|186681293|ref|YP_001864489.1| phage integrase family protein [Nostoc punctiforme PCC 73102]
 gi|186463745|gb|ACC79546.1| phage integrase family protein [Nostoc punctiforme PCC 73102]
          Length = 366

 Score = 83.9 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 58/292 (19%), Positives = 99/292 (33%), Gaps = 34/292 (11%)

Query: 59  EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH 118
               S  KK  TL  L   + +      LAV++    ++Y  +  R      Y       
Sbjct: 71  RASKSQPKKQITLSELWQLFSEHRK-TDLAVST--YHKAYQGKWKRLIASVPYENPNDAE 127

Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAIN----PCLSVERPKRKTEGIRPW 174
                  +    SSA Q L  +     WAV Q  +  N        ++RPKRK   I  +
Sbjct: 128 KIKDWIVQHRGASSARQILILLNAASNWAVSQGLLKTNRFTGLSKGIKRPKRKP--IDAF 185

Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-------------QNNI 221
           +  +M      +  G        FL  +G R  ++     + +                +
Sbjct: 186 STSEMLAILDAF-RGDHYETFVNFLFITGCRTGEAIALQWKQIAPDYRSVTINASYYLGL 244

Query: 222 FSIKTQKTGTIITVELPDGFMKLLAMTPIGKET--FFINNDKQKMNATQF-SIWFKAKAT 278
            + K  KTG   +V      ++LL     G +T   F +     +N  +F S ++K K  
Sbjct: 245 DTRKPTKTGETRSVPCNPQLIRLLKGLTRGAQTDQVFTSVSGGIINNNRFLSDYWKPKIN 304

Query: 279 KAGVNKS-------AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           +  + +        A+  R  + T   ++G TA E+    G       + Y 
Sbjct: 305 QL-IEQRLVERYRPAYNTRHTAITRMLESGLTAAEVARVVGNSPRVINDHYA 355


>gi|307565509|ref|ZP_07627991.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
 gi|307345778|gb|EFN91133.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
          Length = 407

 Score = 83.9 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 46/272 (16%), Positives = 91/272 (33%), Gaps = 31/272 (11%)

Query: 94  SFESYF-DQIIRKSGDFD--YRKITTKHIRSGVESRKHTPSSAIQF----LTSMRVLFKW 146
               +F + +I K G  D    + T   ++            A       L +++ +  +
Sbjct: 138 VLRRHFAEFLIYKYGKKDIGLAEFTPSVVQDFELYLSTVAGCAYNTSVKKLKALKTVTIY 197

Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ---PRLAFEFLLYSG 203
           A ++ Y+  +P L+  R   +       T E++ +  +      +    R  F F  ++G
Sbjct: 198 AQKRGYLLHDPFLN-HRFHLEPVNRGFLTDEEIMKIANKEIAIQRLELVRDVFIFSCFTG 256

Query: 204 LRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDGFMKLLAMTP-----IGKET 254
           L   D       ++           K QKT     V L D    ++A         GK  
Sbjct: 257 LAYIDVSNLTPDNIVTLDDKQWIMTKRQKTSVETNVLLLDIPKNIIAKYSHKTYRDGKLF 316

Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYG 312
             + N K        + + K  A   G+ K  + H  R   AT+S   G     +    G
Sbjct: 317 PILTNQKT-------NAYLKEIADICGIKKNLTFHLARHTFATMSLSKGVPMESVSKMLG 369

Query: 313 WKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
              +   + Y +  ++      +  +++  +D
Sbjct: 370 HTNIKTTQLYARITNKK--VEHDMEQLADKLD 399


>gi|303241940|ref|ZP_07328433.1| integrase family protein [Acetivibrio cellulolyticus CD2]
 gi|302590495|gb|EFL60250.1| integrase family protein [Acetivibrio cellulolyticus CD2]
          Length = 283

 Score = 83.9 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 48/287 (16%), Positives = 103/287 (35%), Gaps = 31/287 (10%)

Query: 75  ISEYRKSAHWGSLAVNSRISFE---SYFDQIIRKSGDFDYRKITTKHIRSG----VESRK 127
           I E+       + + N+   +      +++   ++   D+  I  ++I          ++
Sbjct: 3   IEEFANFLKNENKSTNTIKGYIADIRDYNKWFHETFSKDFTIIIRQNILEYKSYLQNIKR 62

Query: 128 HTPSSAIQFLTSMRVLFKWA----VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
           +   +    L+S+     +     +++E    N      + + +       T+ +++QF 
Sbjct: 63  NNAKTINHKLSSLLKYNHYLVYKNIQKEIAIEN--NDKIKIQLQYASPTKVTETEVKQFL 120

Query: 184 S--FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPD 239
                S+  +      FL Y+GLR S++    +           I+T K     +V L  
Sbjct: 121 QSILESKNLRNYALMVFLAYTGLRISEALNIKMDDFDLDGKECIIRTGKGDKQRSVMLNS 180

Query: 240 GFMKLLA---------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVR 290
             +  +           T  G    F++   +K++ T  +  FK  +       + H +R
Sbjct: 181 KVITAVKEYLKVRSNISTANGSNYLFVSRKNKKLDRTTVNRIFKKYSNS----ITPHQLR 236

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
            F  T + + G  AHE+    G   +     YT   D+ +L  K  R
Sbjct: 237 HFFCTNALEKGMLAHEVANQAGHSNIHTTLLYT-NPDKKKLIDKMER 282


>gi|225874710|ref|YP_002756169.1| phage integrase family protein [Acidobacterium capsulatum ATCC
           51196]
 gi|225792190|gb|ACO32280.1| phage integrase family protein [Acidobacterium capsulatum ATCC
           51196]
          Length = 393

 Score = 83.9 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 52/371 (14%), Positives = 117/371 (31%), Gaps = 39/371 (10%)

Query: 10  FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
           ++ ++    G  ++  R   G   R      +  + +   A   ++     IN+  +   
Sbjct: 13  WIVRKARSKGSDVWVLRWRDGDTNRSTTLGTTQQLRSRAEAQRAASKLTAEINNSIEVA- 71

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHI--------- 119
           T   L++ Y + A       ++     +  + +++ +  +     +    +         
Sbjct: 72  TFGQLVARYLQEA--IPERESTAAPLRAMLNARLLPRWENVRISDMAKDPMMVEQWIKGL 129

Query: 120 -----RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTEGIR 172
                R G + R  +P S +   + +  LF++A+R  Y+    NP   +E          
Sbjct: 130 QSKPRRKGEKPRDLSPKSKLHTRSVLHRLFEYAMRWRYLDCQRNPMSLIELRGTTRRVRP 189

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH--LQNNIFSIKTQ--- 227
            +     Q ++   +     RL     + +GLR S+           +    +I      
Sbjct: 190 IYLLTPQQYYQILANLAPHVRLMAVLAMNTGLRISEILGMRWTDANFEERTLTISRSIVG 249

Query: 228 ------KTGTIITV-ELPDGFMKLLAMTPIGKE-----TFFINNDKQKMNATQFSIW-FK 274
                 KT     V  L +  ++ L      ++      F   +  +  +A+        
Sbjct: 250 RHEGETKTMASADVLPLHEMLVQELRAWQAREDGVNGWLFGNLDTGRPYHASSLRNDHLA 309

Query: 275 AKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
               KAG+ N   H  R        D+GA            ++D    Y + A       
Sbjct: 310 PAGRKAGIPNLGWHNFRHTYRARLGDSGAEPEVQQRLMRHSSIDMTMKYGQNAMLKLTRP 369

Query: 334 KNSRRISSVVD 344
            N++ +  ++ 
Sbjct: 370 ANAKLVEELLA 380


>gi|327314455|ref|YP_004329892.1| site-specific recombinase, phage integrase family [Prevotella
           denticola F0289]
 gi|326946337|gb|AEA22222.1| site-specific recombinase, phage integrase family [Prevotella
           denticola F0289]
          Length = 404

 Score = 83.9 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 40/253 (15%), Positives = 82/253 (32%), Gaps = 22/253 (8%)

Query: 89  VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG----VESRKHTPSSAIQFLTSMRVLF 144
            ++R   + +  +      D  + ++T   I       +    H  S+  +    ++ + 
Sbjct: 133 HSTRKRLQEFIQK-KYHVSDLAFSQLTENFIYELQTFCLGELGHQQSTFFRVAADLKTVC 191

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-----FKSFWSEGSQPRLAFEFL 199
           + A R+          V   + + +  +   KE + +     F     E    R  F F 
Sbjct: 192 RLAYREGLADTLLFDKVHIERGEKKAPKALDKEALDKLKALRFDELEEEMEAVRDVFLFA 251

Query: 200 LYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254
            Y G    D      +H+  +           QKTG +  ++L    ++L+      +  
Sbjct: 252 CYIGAAYCDLMELSKKHIVRDDAGSLWLKFNRQKTGVLCRIKLLPEAVRLIEKMHSDERE 311

Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS-ADAGATAHELMATY 311
             +      +    +    KA   +AG+    ++H  R   AT+   + G     +    
Sbjct: 312 ALL----PFIKYPTYQSCLKALRLRAGISFPFTSHTARHTFATLITLEQGVPIETVSKML 367

Query: 312 GWKTVDQAETYTK 324
           G   V   E Y K
Sbjct: 368 GHTNVSMTERYAK 380


>gi|288871476|ref|ZP_06410189.1| putative tyrosine recombinase XerC [Clostridium hathewayi DSM
           13479]
 gi|288863319|gb|EFC95617.1| putative tyrosine recombinase XerC [Clostridium hathewayi DSM
           13479]
          Length = 358

 Score = 83.9 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 39/273 (14%), Positives = 84/273 (30%), Gaps = 42/273 (15%)

Query: 110 DYRKITTKHIRSGVESRKHTPSSAI-----------QFLTSMRVLFKWAVRQEYVAINPC 158
               +    +   +E  K+  +              + ++S++  F +  R E +  NP 
Sbjct: 86  HLDNLKLVDMEEYMEYLKYRFNDKNQEITNKERGIMRKISSLKSFFNYYYRNERLVNNPA 145

Query: 159 LSVERPKRKTEGIRPWTKEDMQQFKSFWSEG---------------SQPRLAFEFLLYSG 203
             V+ PK   + I     +++        +G                +       +L +G
Sbjct: 146 ALVQLPKLHEKEIIRLDVDEVALLLDEVEKGEALTEKQKSYHEKTKLRDLALLTLMLGTG 205

Query: 204 LRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITV----ELPDGF------MKLLAMTPIG 251
           +R S+     +  +   N    I  +K G  +TV    E+ D         K++      
Sbjct: 206 IRVSECVGLDIDDVDFKNGGIRIH-RKGGKEVTVYFGSEVEDALNDYLEERKMIIAEEGH 264

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMA 309
           +   F++  ++++         K  A         + H +R    T         + +  
Sbjct: 265 ESALFLSLQRKRLAVRSVENLVKKYARIVTPLKKITPHKLRSTYGTNLYKETNDIYLVAD 324

Query: 310 TYGWKTVDQA-ETYTKGADRIRLGIKNSRRISS 341
             G   V+   + Y    D  R   +N  R+  
Sbjct: 325 VLGHADVNTTKKHYAALEDERRRSARNKVRLRE 357


>gi|260590815|ref|ZP_05856273.1| integrase [Prevotella veroralis F0319]
 gi|260537301|gb|EEX19918.1| integrase [Prevotella veroralis F0319]
          Length = 391

 Score = 83.9 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 45/268 (16%), Positives = 95/268 (35%), Gaps = 30/268 (11%)

Query: 93  ISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKHTPSSAIQFLTSM----RVLFKW 146
            S+    +  +   G  D     +T +         K    +      ++    R++++ 
Sbjct: 128 RSYHRQLESFVESKGVADIPLTTLTMEFFDDYRIHFKRKGYALSSTKQNLFWLSRLMYR- 186

Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAFEFLLYSG 203
           AV Q+ +  NP    +  + + + IR  +K D+ +  +   +  Q    R  F F +++G
Sbjct: 187 AVSQQTIRYNPFEDAKYERVERK-IRCLSKTDIARLLAMPLQNEQAEFVRKLFLFSVFTG 245

Query: 204 LRCSDSCRAGVQHLQ---NNIFSIKT--QKTGTIITVELPDGFMKLLAMTPIGKETFFIN 258
           L  +D  +     ++     I  I+   +KT       LP    ++L++ P+        
Sbjct: 246 LAFADVSKLRYCDIETNNAGIRYIRQYRKKTDVESITPLPPIAEQILSLYPLKD-----R 300

Query: 259 NDKQKMNATQFS-IWFKAKATKAGVNK------SAHGVRKFSATISADAGATAHELMATY 311
            +   + AT  S I         G+        S H  R     ++ +AG     +    
Sbjct: 301 KEDSPIFATSMSRIQIGMHLKTIGLACAIRQSLSFHVGRHSFGALTLEAGIPIESIAKMM 360

Query: 312 GWKTVDQAETYTKGADRIRLGIKNSRRI 339
           G  ++   + Y +  D      K+  R+
Sbjct: 361 GHASIASTQIYAQITDNK--ISKDMDRL 386


>gi|323344111|ref|ZP_08084337.1| phage integrase family site-specific recombinase [Prevotella oralis
           ATCC 33269]
 gi|323094840|gb|EFZ37415.1| phage integrase family site-specific recombinase [Prevotella oralis
           ATCC 33269]
          Length = 327

 Score = 83.9 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 31/238 (13%), Positives = 71/238 (29%), Gaps = 46/238 (19%)

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ---------- 180
            +    +  +R   ++     Y +  P L  +RPK        +++++++          
Sbjct: 72  RTRYAKILILRQFSQFMCHMGYASYIPSL-PKRPKTSYI-PHVYSEQEVKSLFNAIDNTL 129

Query: 181 ---QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITV 235
              +  +    G    + F FL Y G R  +        +       ++   K      +
Sbjct: 130 LQCRHNTTCLIGLP--VIFRFLYYCGARVGEVLAIRNSDVNISEGFITLTKTKNRKHRLI 187

Query: 236 ELPDGFMKLLAM------------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
            L +   ++L              +       F+N+  +K++       F+      G+ 
Sbjct: 188 PLNEQMKEVLCTYMHYRDKMPLDSSAEPDSYLFVNHRGEKISHAAVYKRFREILKVCGIT 247

Query: 284 KSAHG-------VRKFSAT----ISADAGATAHE----LMATYGWKTVDQAETYTKGA 326
            + HG       +R   A         +G   +     +    G   +   E Y + A
Sbjct: 248 HAGHGEGPRVHDLRHTFAVHSVYHMVKSGMDIYTAWPIISTLLGHHDIYSTEHYIRLA 305


>gi|72161078|ref|YP_288735.1| site-specific tyrosine recombinase XerC [Thermobifida fusca YX]
 gi|71914810|gb|AAZ54712.1| tyrosine recombinase XerC subunit [Thermobifida fusca YX]
          Length = 303

 Score = 83.9 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 38/261 (14%), Positives = 85/261 (32%), Gaps = 26/261 (9%)

Query: 88  AVNSRISF----ESYFDQIIRKS--GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMR 141
           + ++  ++     S  D +      G  D    T +     +     + ++  +   + R
Sbjct: 28  SPHTVRAYLTDVRSLLDYLADTGAGGLEDLDLATLRGWLGTLHDAGASRATMARRTAAAR 87

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG------SQPRLA 195
           V   +  R   +A +P L +  P+R         ++   +  +   +G       +    
Sbjct: 88  VFTAYLHRSGRLATDPGLRLATPRRHRRLPAVLDEDQAARVCAAARDGEESPLVLRRSAV 147

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-----TIITVELPDGFMKLLA---- 246
            E L  + +R ++ C   +  +     +++    G       I V   D   + L     
Sbjct: 148 VEVLYSTAIRVAELCGLDLDDVDWERHTLRVLGKGGRERVVPIGVPALDAVDRWLRDGRP 207

Query: 247 --MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS-AHGVRKFSATISADAGAT 303
              T       F+     ++     +      A  A V ++  HG+R  +AT   + GA 
Sbjct: 208 QWATAHSGRALFLGARGGRLGE--RTARRDVYAATAAVARTGPHGLRHSAATHLLNGGAD 265

Query: 304 AHELMATYGWKTVDQAETYTK 324
              +    G  ++   + YT 
Sbjct: 266 LRSVQEILGHASLASTQIYTH 286


>gi|302386391|ref|YP_003822213.1| integrase family protein [Clostridium saccharolyticum WM1]
 gi|302197019|gb|ADL04590.1| integrase family protein [Clostridium saccharolyticum WM1]
          Length = 351

 Score = 83.9 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 76/241 (31%), Gaps = 29/241 (12%)

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
              ++ ++S++  + +  R E +  NP   V+ PK   + I     +++         G 
Sbjct: 111 RGIMRKISSLKSFYNYYYRNERLQTNPASLVQLPKLHEKDIIRLDIDEVALLLDEVENGE 170

Query: 191 ---------------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIIT 234
                          +       +L +G+R S+     +  +      I+  +K G  +T
Sbjct: 171 ALTEKQKAYHGKTKVRDLALLTLMLGTGIRVSECVGLDIDDIDLKNGGIRIHRKGGKEVT 230

Query: 235 V--------ELPDGFMKLLAMTPIGKE--TFFINNDKQKMNATQFSIWFKAKATKAGVNK 284
           V         L D   +   + P        F++  ++++         K  +      K
Sbjct: 231 VYFGSEVENALLDYLEERSIVIPEDGHEKALFLSLQRKRIAVRSVENLVKKYSKLVTPLK 290

Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISS 341
             + H +R    T         + +    G   V+   + Y    D  R   +N  ++  
Sbjct: 291 QITPHKLRSTYGTSLYKETGDIYLVADVLGHSDVNTTKKHYAALEDERRRSARNKVKLRE 350

Query: 342 V 342
            
Sbjct: 351 T 351


>gi|194439706|ref|ZP_03071775.1| phage integrase family protein [Escherichia coli 101-1]
 gi|194421325|gb|EDX37343.1| phage integrase family protein [Escherichia coli 101-1]
          Length = 372

 Score = 83.9 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 59/355 (16%), Positives = 112/355 (31%), Gaps = 42/355 (11%)

Query: 17  RHGKIIYYFRKG-HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT----- 70
           R G++ Y ++    G+   L          A  +    +  + EY      +  +     
Sbjct: 22  RTGRVYYQYKNPVTGKFHGLGTDKGKAEKIASTANQRIAAAEAEYFMRKIDESPSATKRR 81

Query: 71  ---LKWLISEYRKSAHWG----SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
              LK  +  Y K          +A  +          ++ + G+   +++  +     +
Sbjct: 82  GIRLKAWVDRYLKIQDTRLKNGDIATTTHKEKARMAAYLVSRLGNHPLKELEVRDFALIL 141

Query: 124 ESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAI--NPCLSVERPKRKTEGIRPWTKEDM 179
           +    K   S+A         ++K A     V    NP  +  +P  K    R  T ED 
Sbjct: 142 DEWLDKDMVSTARVNRGLWVDIYKEAQHAGEVPPGWNPPEATRKPIPKVTRAR-LTLEDW 200

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239
           Q+  +   E    R A    + +G R  D C      + N    I   KTG  + + L  
Sbjct: 201 QKIYNATPEKHFIRNAMLLAIVTGQRRDDICHMRFSDVWNEHLHITQGKTGMRLALPLTL 260

Query: 240 G-------FMKLLA-MTPIGKETFFINNDK----QKMNATQFSIWFKAKATKAGV----- 282
                     +++          + I++      + M+    S +F      AG+     
Sbjct: 261 RCDAIGITLKEVIDGCRDRILSPYLIHSRHQKQPKPMSKDNLSDYFAKARDLAGITPPAG 320

Query: 283 --NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY--TKGADRIRLGI 333
               + H  R  S  +    G     L    G K     + Y  T+G + ++L +
Sbjct: 321 KTPPTFHEQRSLSERLYRAQGIDTKTL---LGHKVQATTDRYNDTRGQEWVKLVV 372


>gi|146292724|ref|YP_001183148.1| phage integrase family protein [Shewanella putrefaciens CN-32]
 gi|145564414|gb|ABP75349.1| phage integrase family protein [Shewanella putrefaciens CN-32]
          Length = 235

 Score = 83.9 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 80/239 (33%), Gaps = 21/239 (8%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----SRK 127
             L+ ++         +  +R ++     Q+ ++  +     IT + + +        R 
Sbjct: 2   SSLLQQFHDEISLRGYSARTRNAYLYAITQL-QQYANQPLDNITDEQLTAYFRYLNLERH 60

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           H+ ++    L  +   ++  +++++      + +  PKR  +  +  + +D+     +  
Sbjct: 61  HSRATLKLQLNGIHFFYEHVLKRDF-----TIQLSLPKRPHKLPQLLSCQDIAALL-YHC 114

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLL 245
           +  + R         GLR S+     V  +      +K    K      V L    + LL
Sbjct: 115 QSLKQRAMLALCYGCGLRVSELTHIKVADIDGQRQLLKVCQGKGACDRWVILSPTLLTLL 174

Query: 246 A---MTPIGKETFFINNDK---QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATI 296
                     E  F +        ++ + F       A  AG+    S H +R   AT 
Sbjct: 175 RQYWRAYHPVEWLFASTYHDVVYPLHESTFRKALAKSARLAGITKPCSPHSLRHAYATH 233


>gi|332161996|ref|YP_004298573.1| Integrase family protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325666226|gb|ADZ42870.1| Integrase family protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 314

 Score = 83.9 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 40/274 (14%), Positives = 78/274 (28%), Gaps = 35/274 (12%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH----- 128
           LI  + K       +++ + S  +  + I +  G+     IT K      + R       
Sbjct: 22  LIDLWYK---LHGCSLSDKKSRLAKLEIICKGLGNPIAADITPKDWAHYRDQRLRGEINN 78

Query: 129 -----------TPSSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTK 176
                      T  +       +R +F    R   +   NP +++    +    +     
Sbjct: 79  GYSTSLRTRMVTTGTVNSEQAYLRAVFNELTRLGEWSLPNPLMNIREFDQPEREMAWLND 138

Query: 177 EDMQQFKSFWSEGSQPRLAFE--FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234
           + +            P L       L +G R ++  +     +  N  +    K     T
Sbjct: 139 DQIDSLLDASDLHGNPELTLIVRLCLSTGARWNEIAKIKASQISPNKITFINTKGKKNRT 198

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKM--NATQFSIWFKAKATKAGVNKSAHGVRKF 292
           V L +   + LA            +  +       QF    +    +  V +  H +R  
Sbjct: 199 VPLSEEMYQALAA-----------HKGKAFAPCYKQFYRVIRLAQIELPVGQMTHVLRHT 247

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            A+    AG     L    G   +     Y+  A
Sbjct: 248 FASHFMMAGGNIIVLQRILGHSDIRVTMRYSHFA 281


>gi|260175108|ref|ZP_05761520.1| transposase [Bacteroides sp. D2]
          Length = 456

 Score = 83.9 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 46/274 (16%), Positives = 83/274 (30%), Gaps = 39/274 (14%)

Query: 93  ISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVESRKHTPSSAIQFLTSMRVLFKWA 147
            +++S    + R  G  D R         +     + S   + ++   +L ++R L+  A
Sbjct: 185 AAYKSTRSSLARFIGRPDVRMSEVDLAFVRRYEDFLYSNGASGNTVSYYLRNLRSLYNQA 244

Query: 148 VRQEY----------VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP----R 193
           V   Y              P  +V+R           ++ DMQ       E        R
Sbjct: 245 VTDGYHPRGEYPFAKAQTRPAKTVKR---------ALSRTDMQNLADLKLENEPELEFTR 295

Query: 194 LAFEFLLYS-GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252
             + F  Y+ G+   D        + N + +    K+  +I + +      ++       
Sbjct: 296 NLYLFSFYAQGMAFVDIVLLKKTDICNGVLTYSRHKSKQLIRIVVTPQMQGVIDKYNTEN 355

Query: 253 ETFFIN-----NDKQKMNATQFSIWFKAKATKA-----GVNKSAHGVRKFSATISADAGA 302
           E  F           K          +     A      V  + +  R   AT++ D GA
Sbjct: 356 EYLFPIISGEYASGYKQYRLALGRINRHLKKIAVVADIKVPLTTYTARHTWATLARDYGA 415

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
               + A  G  + +    Y K  D   L   NS
Sbjct: 416 PISVISAGLGHTSEEMTRVYLKDFDVSMLNQVNS 449


>gi|145594876|ref|YP_001159173.1| phage integrase family protein [Salinispora tropica CNB-440]
 gi|145304213|gb|ABP54795.1| phage integrase family protein [Salinispora tropica CNB-440]
          Length = 332

 Score = 83.9 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 39/269 (14%), Positives = 81/269 (30%), Gaps = 38/269 (14%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITT------------KHIRSGVESRKHTPSS 132
             L+ ++R ++       +    D D   +              +   +    +  TP++
Sbjct: 33  RRLSEHTRDAYRRDVGGWLDWCADADLDPLRATFLHVNAYARWLESTPTARSGKPPTPAT 92

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP--WTKEDMQQFKSFWSEGS 190
             + L+++   + + V    V  NP    +RP    +       T E++    +     +
Sbjct: 93  VARKLSALSSWYDFLVTLRAVGTNPVTGADRPHVDRDHSATIGLTPEEVDALLTVADSAT 152

Query: 191 -----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK---TQKTGTIITVELPDGFM 242
                + R A   L+  GLR  +     V  L           T K G      L  G  
Sbjct: 153 GPTAARNRAAVALLVDLGLRVGELVSLDVADLGTERGHHSVRFTGKGGRARRRALTPGAS 212

Query: 243 KLLAM----------TPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGVNK----SA 286
             +             P+ + T    + +   +++        +  A +A +      S 
Sbjct: 213 AAVQAYLTRRARTEGVPVHRLTGPLLVTSTGARLDRHSVFRLVRRLAREASIPGWARLSP 272

Query: 287 HGVRKFSATISADAGATAHELMATYGWKT 315
           H +R   AT +   G    ++    G   
Sbjct: 273 HSLRHSFATTARAEGVPLEDVQDAMGHAD 301


>gi|298244075|ref|ZP_06967881.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
 gi|297551556|gb|EFH85421.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
          Length = 379

 Score = 83.9 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 41/304 (13%), Positives = 92/304 (30%), Gaps = 51/304 (16%)

Query: 93  ISFESYFD----QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQ---FLTSMRVLFK 145
            S+E Y +     II + G    + +  +HI+     +     SA         +     
Sbjct: 75  RSYERYEEIARLHIIPRLGKVKLQDLKPQHIQVLQAEKLEEGLSASTVGIIHQVLHKSLD 134

Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLR 205
            AV+   +  N C +V   + K + ++P T +  ++  +         L F   L +G+R
Sbjct: 135 DAVKLGLLGKNVCKAVPPSREKRKDVKPLTPDQSRKLLNAVKGHPLEAL-FILALTTGMR 193

Query: 206 CSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP----DGFMKLLAMTPIGKETFFIN--- 258
             +        +      +  ++T + +  ++     D  ++    T   + +  +    
Sbjct: 194 RGELFALKWNDIDLEHGVLYVRRTLSRVPTKVRGENQDVLVEAETKTQRSRRSIVLTLLA 253

Query: 259 -------------------------------NDKQKMNATQFSI-WFKAKATKAGV-NKS 285
                                          +D   ++    S    K     AG+ +  
Sbjct: 254 VEALIEHRLKQDEQHHIAGDAWQDNDYVFCAHDGTYLSPNHVSSYQLKQLLKAAGLPDIR 313

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGIKNSRRISSVVD 344
            H +R  +AT+          +    G   +      Y+       +     +++ S   
Sbjct: 314 FHDLRHGAATLLLSLQVHPKVVQEILGHSDISTTMNIYSHVL--PSMQADAMKQLHSAFK 371

Query: 345 SDDP 348
            DDP
Sbjct: 372 QDDP 375


>gi|260843365|ref|YP_003221143.1| integrase [Escherichia coli O103:H2 str. 12009]
 gi|257758512|dbj|BAI30009.1| integrase [Escherichia coli O103:H2 str. 12009]
          Length = 372

 Score = 83.9 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 59/355 (16%), Positives = 112/355 (31%), Gaps = 42/355 (11%)

Query: 17  RHGKIIYYFRKG-HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT----- 70
           R G++ Y ++    G+   L          A  +    +  + EY      +  +     
Sbjct: 22  RTGRVYYQYKNPVTGKFHGLGTDKGKAEKIASTANQRIAAAEAEYFMRKIDESPSATKRR 81

Query: 71  ---LKWLISEYRKSAHWG----SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
              LK  +  Y K          +A  +          ++ + G+   +++  +     +
Sbjct: 82  GIRLKAWVDRYLKIQDTRLKNGDIAATTHKEKARMAAYLVSRLGNHPLKELEVRDFALIL 141

Query: 124 ESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAI--NPCLSVERPKRKTEGIRPWTKEDM 179
           +    K   S+A         ++K A     V    NP  +  +P  K    R  T ED 
Sbjct: 142 DEWLDKDMVSTARVNRGLWVDIYKEAQHAGEVPPGWNPPEATRKPIPKVTRAR-LTLEDW 200

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239
           Q+  +   E    R A    + +G R  D C      + N    I   KTG  + + L  
Sbjct: 201 QKIYNATPEKHFIRNAMLLAIVTGQRRDDICHMRFSDVWNEHLHITQGKTGMRLALPLTL 260

Query: 240 G-------FMKLLA-MTPIGKETFFINNDK----QKMNATQFSIWFKAKATKAGV----- 282
                     +++          + I++      + M+    S +F      AG+     
Sbjct: 261 RCDAIGITLKEVIDGCRDRILSPYLIHSRHQKQPKPMSKDNLSDYFAKARDLAGITPPAG 320

Query: 283 --NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY--TKGADRIRLGI 333
               + H  R  S  +    G     L    G K     + Y  T+G + ++L +
Sbjct: 321 KTPPTFHEQRSLSERLYRAQGIDTKTL---LGHKVQATTDRYNDTRGQEWVKLVV 372


>gi|239904730|ref|YP_002951468.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
 gi|239794593|dbj|BAH73582.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
          Length = 374

 Score = 83.9 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 36/205 (17%), Positives = 65/205 (31%), Gaps = 16/205 (7%)

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           +  ++   +  +F + +  E    NP    +R K +   ++    EDM++          
Sbjct: 162 TVNRYCDYVDAIFNFGIENELSKTNPMSKRKRSKERPRDVQ-LNIEDMKKIMDKAEP--H 218

Query: 192 PRLAFEFLLYSGLRCSD--SCRAGVQHLQ--NNIFSIKTQKTGTIITVELP-DGFMKLLA 246
            + A E     G R  +         ++        I   KT T  TV +      KL A
Sbjct: 219 LKWAMEVCFNLGTRPGESELLSLKWSNVDFTKATVHIYATKTKTFRTVPIKVSFLEKLKA 278

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATA 304
           M       + +  +  ++        F+     AG+N     + +R   AT      A  
Sbjct: 279 MREYSTSEYIVEYNGHQI--KSLKGSFRTACELAGINYPVRMYDLRHLFATTLLSNNADL 336

Query: 305 HELMATYGWKTVDQAE----TYTKG 325
             +    G  TV         Y +G
Sbjct: 337 AAVSKLMGHATVKMTADTYYHYLEG 361


>gi|322411263|gb|EFY02171.1| Integrase [Streptococcus dysgalactiae subsp. dysgalactiae ATCC
           27957]
          Length = 381

 Score = 83.9 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 45/310 (14%), Positives = 105/310 (33%), Gaps = 51/310 (16%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132
           L   + KS    ++   + ++ +    + +I   G     K+T  +I+  +    +    
Sbjct: 73  LAELWLKSYQ-LTVKPQTFVATKRMLHNHLIPIFGSLKVEKLTVSYIQRFINDLSNQLMH 131

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSV---ERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
                +  R + ++ V  + +  NP   V   + PKR+ + I+    ED+++  S+    
Sbjct: 132 YGVVHSINRRVLQYGVSLQLIPFNPARDVILPKVPKRENKVIKFIASEDLKELLSY---- 187

Query: 190 SQPRLA------------FEFLLYSGLRCSDSCRAGVQHLQNNIFSI------------- 224
              RLA            +  LL +G R  ++       +   + +I             
Sbjct: 188 -MERLANKKYIYYFDYVLYNVLLATGCRFGEAVALEWSDIDLEVGTIDINKNYSRLLKLL 246

Query: 225 -------------KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI 271
                          +KT  ++ +         L ++    +  F   +K+  N      
Sbjct: 247 GTPKSKAGFRVISIDKKTVNMLKLYKNRQRQLFLEVSDCAPKVVFATPNKEYQNMGTRQD 306

Query: 272 WFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK-GADR 328
               +  +  + + + H  R   A++  +AG +  EL    G  T+    + Y+    D+
Sbjct: 307 SLDRRCAEIAIPRFTFHAFRHTHASLLLNAGISYKELQYRLGHATLAMTMDIYSHLSKDK 366

Query: 329 IRLGIKNSRR 338
            +  +    +
Sbjct: 367 EKEAVSFYEK 376


>gi|294664098|ref|ZP_06729494.1| phage-related integrase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|292606129|gb|EFF49384.1| phage-related integrase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
          Length = 394

 Score = 83.9 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 50/365 (13%), Positives = 96/365 (26%), Gaps = 68/365 (18%)

Query: 19  GKIIYYFRKGH--GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76
           G   +Y+ + H  GR  R           AY  A            + +    TL +L +
Sbjct: 29  GDGRWYYVEPHPEGRGTRKRTV-------AYADARLSELHAIVESATCQHARGTLAYLRT 81

Query: 77  EYRKSAHWGSLAVNSRISFE-------SYFDQIIRKSGDFDYRKITTKHIRSGVESRKH- 128
            +  S  +  L+ +++  +        +Y  +     G     ++    ++  VE+    
Sbjct: 82  AFEASTEFTELSGDTKRDYRWCGEVACAYVLKDGAPLGQLQISRMNVPLVQRLVETLAAG 141

Query: 129 ------------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
                        PS A   L  +R  F W +R      NP   V + K K +   P  +
Sbjct: 142 RPASKLQPAIEPRPSKANHVLRYLRRTFGWGIRHGICEKNPATGVRQVKEKGDHRMPEPE 201

Query: 177 --------EDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225
                    + +      + GS P              LR  +       H        +
Sbjct: 202 VFAAVLAFAEARGRLKAHTLGSVPPYLPAVMTLAYNLRLRGIEVTDLTDAHALQTGVRSE 261

Query: 226 TQKTGTIITVELPDGF-----------------MKLLAMTPIGKETFFINNDKQKMNATQ 268
            +K          +                    KL       +    ++     ++ + 
Sbjct: 262 RRKGSRDNVTLWNEELRATWKWLVDYRKEVTEARKLPVPLKPERRRLLVSQSGTPLSKSA 321

Query: 269 FSIWFKAKATKAGVNK--------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
               ++     A              HG++    T +A   A         G  T++   
Sbjct: 322 LDSAWQRMIAMAIREHVIAEEQRFGLHGLKHRGITDTAGNRADK---QDAAGHATLEMTN 378

Query: 321 TYTKG 325
            Y   
Sbjct: 379 RYAHD 383


>gi|212709287|ref|ZP_03317415.1| hypothetical protein PROVALCAL_00322 [Providencia alcalifaciens DSM
           30120]
 gi|212688199|gb|EEB47727.1| hypothetical protein PROVALCAL_00322 [Providencia alcalifaciens DSM
           30120]
          Length = 343

 Score = 83.9 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 41/236 (17%), Positives = 83/236 (35%), Gaps = 13/236 (5%)

Query: 95  FESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQE 151
            +   +++I+  GD     I    +      R       S+  + L  +R +F + +   
Sbjct: 98  RQREVNRVIKLMGDPAASSIDKSTLTYYCHDRLASGVKASTINRELVQLRGMFTFLISSG 157

Query: 152 Y-VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210
             ++ NP    ++ K     +   T  ++++  +  S G   RLA  F L +G R S++ 
Sbjct: 158 LFLSDNPIAGHKKLKEDIPEMSYLTTFEVKKLLAELS-GDNYRLAI-FGLSTGTRWSEAK 215

Query: 211 RAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS 270
           R   +H+ +   ++   K G   T+ L      ++ +    +  F         +   F 
Sbjct: 216 RVKCEHIVHKRVTLFKTKNGKKRTIPLS---QNVIDIVTKDRTAFLF----PNASYKDFR 268

Query: 271 IWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
              +         ++ H +R    T     G     L    G   ++Q  TY   A
Sbjct: 269 NALRKVKPDIPKGQATHIMRHTFGTHFMFRGGNIVTLQKILGHSKIEQTMTYAHFA 324


>gi|220928269|ref|YP_002505178.1| integrase family protein [Clostridium cellulolyticum H10]
 gi|219998597|gb|ACL75198.1| integrase family protein [Clostridium cellulolyticum H10]
          Length = 378

 Score = 83.9 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 40/294 (13%), Positives = 93/294 (31%), Gaps = 37/294 (12%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITT---KHIRSGVES 125
           T++  ++ +            +   + +  +  +I K G++  +++          G   
Sbjct: 69  TVENWLTYWLDDIKAIKCEETTLYGYRNIINKHLIPKLGNYKLQELNPTILNKYFKGKLD 128

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
            K + ++  +    ++   K AV +E +  NP   V   K +      +  E ++   + 
Sbjct: 129 EKLSQNTIRKHYDLLKDTLKTAVDEEKILKNPLNKVPPIKVQKNEKNFYNVEQLKTLFTI 188

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKT-------------- 229
             E  +  +  +     GLR  +       ++   N I +I   +T              
Sbjct: 189 V-ENDRMEIVVKLAGMLGLRREEIAGLKWDNIDLENRIITIAEARTQAGKKTVAKGTKNS 247

Query: 230 GTIITVELPDGFMKLLAMTPI--------------GKETFFINNDKQKMNATQFSIWFKA 275
            +  T+  P+  + LL                    +       + +       S  FK 
Sbjct: 248 SSHRTLYAPEEIINLLTSIKTTQEEQKRLLGEAYKDEGYIMAWENGEPYRPNYLSDLFKK 307

Query: 276 KATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTV-DQAETYTKGAD 327
                 +     H +R   A+I+ + G   +++    G   V   ++ YT   D
Sbjct: 308 IIDDNKLPSLRLHDLRHTFASIANELGTNLYDISKALGHSQVGTTSQIYTHMFD 361


>gi|325854096|ref|ZP_08171486.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
 gi|325484207|gb|EGC87139.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
          Length = 410

 Score = 83.9 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 47/272 (17%), Positives = 91/272 (33%), Gaps = 31/272 (11%)

Query: 94  SFESYF-DQIIRKSGDFD--YRKITTKHIRSGVESRKHTPSSAIQF----LTSMRVLFKW 146
               +F + +I K G  D    + T   ++            A       L +++ +  +
Sbjct: 138 VLRRHFAEFLIYKYGKKDIGLAEFTPSVVQDFELYLSTAAGCAYNTSVKKLKALKTVTIY 197

Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ---PRLAFEFLLYSG 203
           A ++ Y+  +P L+  R   +       T E++ +  +      +    R  F F  ++G
Sbjct: 198 AQKRGYLLHDPFLN-HRFHLEPVNRGFLTDEEIMKIANKDFAIQRLELVRDVFIFSCFTG 256

Query: 204 LRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDGFMKLLAMTP-----IGKET 254
           L   D       ++           K QKT     V L D    ++A         GK  
Sbjct: 257 LAYIDVSNLTPDNIVTLDDKQWIMTKRQKTSVETNVLLLDIPKSIIAKYSHKTYRDGKLF 316

Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYG 312
             + N K        + + K  A   GV K  + H  R   AT+S   G     +    G
Sbjct: 317 PILTNQKT-------NAYLKEIADLCGVKKNLTFHLARHTFATMSLSKGVPMESVSKMLG 369

Query: 313 WKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
              +   + Y +  ++      +  +++  +D
Sbjct: 370 HTNIKTTQIYARITNKK--IEHDMEQLAGKLD 399


>gi|319945806|ref|ZP_08020057.1| phage integrase family site-specific recombinase [Streptococcus
           australis ATCC 700641]
 gi|319748166|gb|EFW00409.1| phage integrase family site-specific recombinase [Streptococcus
           australis ATCC 700641]
          Length = 377

 Score = 83.9 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 91/278 (32%), Gaps = 45/278 (16%)

Query: 91  SRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP-----------SSAIQFLTS 139
           +     +Y   I     + +  K+T  HI    E  K  P           ++  + L  
Sbjct: 84  TSTQRNNYERHIKPYFKNTNLNKLTYDHIFEFREYLKTKPKKQNENEVLSYNTINKVLIL 143

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS--FWSEGSQPRLAFE 197
           ++ +F   +R+  +  NP  ++ +   +   I+ W+ E+  +F+      E S   L F 
Sbjct: 144 LKKIFDTGIRKSLIDKNPVKNLRKLPIRKPDIKFWSIEEFTRFRELIRDDEISYD-LFFI 202

Query: 198 FLLYSGLRCSDSCRAGVQHLQ---------------NNIFSIKTQKTGTIIT-VELPDGF 241
              ++G+R  +        +                NN   I T KT +    + +    
Sbjct: 203 IAFFTGMRMGEILALNWNDINLLTNTIYVTKTVYFVNNTSYINTTKTRSGTRNITINQKL 262

Query: 242 MKLL------------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG-VNK-SAH 287
            ++L              T   +E   I +    +        FK    +   + K   H
Sbjct: 263 AEMLIDWKVKQKEKLEEFTKNTEELQIIQSTPITITKNMIDKKFKQILERDKDLKKIRIH 322

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
            +R   A++  + G     +    G  ++    +TY+ 
Sbjct: 323 DLRHSHASLLINQGEDYLVVKERLGHASITTTIDTYSH 360


>gi|260912329|ref|ZP_05918879.1| integrase [Prevotella sp. oral taxon 472 str. F0295]
 gi|260633556|gb|EEX51696.1| integrase [Prevotella sp. oral taxon 472 str. F0295]
          Length = 410

 Score = 83.9 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 47/272 (17%), Positives = 91/272 (33%), Gaps = 31/272 (11%)

Query: 94  SFESYF-DQIIRKSGDFD--YRKITTKHIRSGVESRKHTPSSAIQF----LTSMRVLFKW 146
               +F + +I K G  D    + T   ++            A       L +++ +  +
Sbjct: 138 VLRRHFAEFLIYKYGKKDIGLAEFTPSVVQDFELYLSTAAGCAYNTSVKKLKALKTVTIY 197

Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ---PRLAFEFLLYSG 203
           A ++ Y+  +P L+  R   +       T E++ +  +      +    R  F F  ++G
Sbjct: 198 AQKRGYLLHDPFLN-HRFHLEPVNRGFLTDEEIMKIANKDFAIQRLELVRDVFIFSCFTG 256

Query: 204 LRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDGFMKLLAMTP-----IGKET 254
           L   D       ++           K QKT     V L D    ++A         GK  
Sbjct: 257 LAYIDVSNLTPDNIVTLDDKQWIMTKRQKTSVETNVLLLDIPKSIIAKYSHKTYRDGKLF 316

Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYG 312
             + N K        + + K  A   GV K  + H  R   AT+S   G     +    G
Sbjct: 317 PILTNQKT-------NAYLKEIADLCGVKKNLTFHLARHTFATMSLSKGVPMESVSKMLG 369

Query: 313 WKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
              +   + Y +  ++      +  +++  +D
Sbjct: 370 HTNIKTTQIYARITNKK--IEHDMEQLAGKLD 399


>gi|317502577|ref|ZP_07960699.1| integrase [Prevotella salivae DSM 15606]
 gi|315666304|gb|EFV05849.1| integrase [Prevotella salivae DSM 15606]
          Length = 410

 Score = 83.9 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 46/272 (16%), Positives = 91/272 (33%), Gaps = 31/272 (11%)

Query: 94  SFESYF-DQIIRKSG--DFDYRKITTKHIRSGVESRKHTPSSAIQF----LTSMRVLFKW 146
               +F + +I K G  D    + T   ++            A       + +++ +  +
Sbjct: 138 VLRRHFSEFLIHKYGRKDIGLTEFTPSVVQDFELYLSTVAGCAYNTSVKKMKALKTVTIY 197

Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ---PRLAFEFLLYSG 203
           A ++ Y+  +P L+  R   +       T E++ +  +      +    R  F F  ++G
Sbjct: 198 AQKRGYLLHDPFLN-HRFHLEPVNRGFLTDEEIMKIANKELAIQRLELVRDVFIFSCFTG 256

Query: 204 LRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDGFMKLLAMTP-----IGKET 254
           L   D       ++           K QKT     V L D    ++A         GK  
Sbjct: 257 LAYIDVSNLRPDNIVTLDDKQWIMTKRQKTSVETNVLLLDIPRSIIAKYSHKTYRDGKLF 316

Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYG 312
             + N K        + + K  A   GV K  + H  R   AT+S   G     +    G
Sbjct: 317 PILTNQKT-------NAYLKEIADLCGVKKNLTFHLARHTFATMSLSKGVPMESVSKMLG 369

Query: 313 WKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
              +   + Y +  ++      +  +++  +D
Sbjct: 370 HTNIKTTQIYARITNKK--IEHDMEQLAGKLD 399


>gi|153838032|ref|ZP_01990699.1| phage integrase, putative [Vibrio parahaemolyticus AQ3810]
 gi|149748566|gb|EDM59425.1| phage integrase, putative [Vibrio parahaemolyticus AQ3810]
          Length = 565

 Score = 83.9 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 45/345 (13%), Positives = 96/345 (27%), Gaps = 60/345 (17%)

Query: 56  PKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT 115
             +      +    ++  +   Y +S         +        +++I   GD D  ++T
Sbjct: 217 ANKHQPKRKKASQYSISNVFKRYHQSETLKDKDAKALYEAGLQIERLIEVIGDLDVTEVT 276

Query: 116 TKHIRSGVESRKHTP-----------------------------SSAIQFLTSMRVLFKW 146
             HI    ++    P                             ++    L    V+F +
Sbjct: 277 RAHIVEFRDTLLQLPKSKIASIRNRPLLEQIELVKIQGLETLSATTVKNCLRKTSVVFSY 336

Query: 147 AVRQEYVAINPCLSVER----PKRKTEGIRPWTKEDMQQFK---------SFWSEGSQPR 193
           AV    +  NP + V       K +    + +T  +M++           +    G    
Sbjct: 337 AVELGIIDSNPHVGVRVATAEKKTEANEGKGYTDSEMRRLFQADVFNDVNARKPYGMACY 396

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSI---------KTQKTGTIITVELPDGFM 242
                  Y+G R  +  +     +   ++               +   ++  V +P   +
Sbjct: 397 WVPLLCRYTGARLEEMSQLHKSDVSQSDSGIHYLNIRRGEGQSVKNNSSLRHVPIPAHLI 456

Query: 243 KL--LAMTPIGKETFF--INNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATI 296
           +L  L          F  +  +K    +   S W+       G++ +  AH  R    T 
Sbjct: 457 ELGFLDYVAESGGFLFPELKENKYGKKSAALSKWWGQTVRSLGIHTTQPAHAFRHTFKTA 516

Query: 297 SADAGATAHELMATYGWKTVDQAETY-TKGADRIRLGIKNSRRIS 340
               G       A  G        +Y T   +  +  I    R++
Sbjct: 517 LRRLGIADTVSDAITGHTPAGVGGSYGTVELETKKEAIDRLPRLA 561


>gi|116254511|ref|YP_770347.1| putative integrase/recombinase protein [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115259159|emb|CAK10274.1| putative integrase/recombinase protein [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 331

 Score = 83.9 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 42/290 (14%), Positives = 94/290 (32%), Gaps = 40/290 (13%)

Query: 74  LISEYRKS--AHWGSLAVNSRISFESYFDQII----RKSGDFD----YRKITTKHIRSGV 123
           LI  +     A   +++ ++  S+   F  ++    R++G +        +  + I + +
Sbjct: 8   LIERFFGQRLARQRNVSPHTIASYRDTFKLLLKFAHRRTGKYPSALRLEDLDAELIVAFL 67

Query: 124 ES----RKHTPSSAIQFLTSMRVLFKW-AVRQ----EYVAINPCLSVERPKRKTEGIRPW 174
           +     R  +P++    LT++R  F++ A  +      +     L++         ++  
Sbjct: 68  DDLDSGRHASPATYNLRLTAIRGFFRFLAFEEPAYSGQIQR--VLAIPGKIGSKREVQFL 125

Query: 175 TKEDMQQFKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKT 229
            + +++   S        G +  +     + +G+R S+        +       I+    
Sbjct: 126 LRNEIEAILSAPDRRTWVGRRDYVLLLTAVQTGMRLSELVGLDRSAVTIGTGAHIRCFGK 185

Query: 230 G-----TIITVELPDGFMKLLAMTPIG-KETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
           G     T IT  L       L   P+G     F      +M+              A   
Sbjct: 186 GRKERTTPITRMLNATLKAWLDEPPVGNGNALFPTVHGGQMSPDAVQYLLAKYVLAASKG 245

Query: 284 K--------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
                    S H +R  +A    DAG  +  +    G ++    + Y   
Sbjct: 246 CLSLRSKRVSPHVLRHSAAMELLDAGVDSTVISLWLGHESTRSTQPYLHA 295


>gi|330860733|emb|CBX71025.1| integrase [Yersinia enterocolitica W22703]
          Length = 332

 Score = 83.9 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 40/274 (14%), Positives = 78/274 (28%), Gaps = 35/274 (12%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH----- 128
           LI  + K       +++ + S  +  + I +  G+     IT K      + R       
Sbjct: 40  LIDLWYK---LHGCSLSDKKSRLAKLEIICKGLGNPIAADITPKDWAHYRDQRLRGEINN 96

Query: 129 -----------TPSSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTK 176
                      T  +       +R +F    R   +   NP +++    +    +     
Sbjct: 97  GYSTSLRTRMVTTGTVNSEQAYLRAVFNELTRLGEWSLPNPLMNIREFDQPEREMAWLND 156

Query: 177 EDMQQFKSFWSEGSQPRLAFE--FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234
           + +            P L       L +G R ++  +     +  N  +    K     T
Sbjct: 157 DQIDSLLDASDLHGNPELTLIVRLCLSTGARWNEIAKIKASQISPNKITFINTKGKKNRT 216

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKM--NATQFSIWFKAKATKAGVNKSAHGVRKF 292
           V L +   + LA            +  +       QF    +    +  V +  H +R  
Sbjct: 217 VPLSEEMYQALAA-----------HKGKAFAPCYKQFYRVIRLAQIELPVGQMTHVLRHT 265

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            A+    AG     L    G   +     Y+  A
Sbjct: 266 FASHFMMAGGNIIVLQRILGHSDIRVTMRYSHFA 299


>gi|311064260|ref|YP_003970985.1| integrase/recombinase [Bifidobacterium bifidum PRL2010]
 gi|310866579|gb|ADP35948.1| Integrase/recombinase [Bifidobacterium bifidum PRL2010]
          Length = 406

 Score = 83.9 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 57/389 (14%), Positives = 113/389 (29%), Gaps = 69/389 (17%)

Query: 20  KIIYYFRK-------GHGRRIRLPYPH--ESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
           K  ++FRK          RR  +      +S     + + +  +  +R+     +  P T
Sbjct: 21  KGRWHFRKDMGTDPTTGRRRPPIEATGMVKSEARARFQAKI--TEWERDGRLPSKDGPKT 78

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
                  + +     ++   +  +  S+   +    GD    ++T   I       + T 
Sbjct: 79  -ADYFERWMEEHR-AAINPTTWRNESSWMRTMNAIIGDIRLNRLTANDINGMCRRLRRTR 136

Query: 131 SS--AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-FKSFWS 187
            S     +L  +  + + A R   +A +P  +V R              D  +  ++  +
Sbjct: 137 KSKTVNTYLAVLGAMLRTAKRDGLIADDPMENVGRMPEDRYERPILDVADPAKVIEAALA 196

Query: 188 EGSQP-------------RLAFEFLLYSGLRCSDSCRAGVQHLQ---------------- 218
           E                  L FE    +G+R  +        L+                
Sbjct: 197 EPDPAVAVFDSPDEREKWALMFELAFTTGMRPGERYGLMPYQLELHHGVPTINVCQQAKP 256

Query: 219 ----------------NNIFSIKTQKTGTII-TVELPDGF-----MKLLAMTPIGKETFF 256
                           +    +   KT   + TV +P G        ++          F
Sbjct: 257 IPAGATIPDWMEAEHLDGAIWLTKPKTAKGVRTVPIPQGLWDRLWAHIVKWGVPSHGLVF 316

Query: 257 INNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKT 315
            N   + +        ++     AG+     +  R + AT  A AGA+  E  A  G   
Sbjct: 317 TNLYGRPIRRDNEEKRWRRSLKMAGLPYVDIYSARHWLATELAAAGASDEERTAIMGHTD 376

Query: 316 VDQAETYTKGADRIRLGIKNSRRISSVVD 344
           +     YT   ++ RL       +  + D
Sbjct: 377 IHTTSVYTHWREQ-RLAKTLDAALPDLRD 404


>gi|301308954|ref|ZP_07214899.1| integrase [Bacteroides sp. 20_3]
 gi|300832980|gb|EFK63605.1| integrase [Bacteroides sp. 20_3]
          Length = 379

 Score = 83.9 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 50/267 (18%), Positives = 90/267 (33%), Gaps = 32/267 (11%)

Query: 88  AVNSRISFESYF-------DQIIRKS--GDFDYRKITTKHIRSGVESRKHTPSSAIQFLT 138
              S+ ++  Y        + I ++    D    ++T   IR      ++    A   + 
Sbjct: 102 KDRSKRTYLKYLTVRKYVAEFIRKQYKRADITMNELTEDFIRDYCLYLRNEAGLAQSSVW 161

Query: 139 SMRVLFKW----AVRQEYVAINPCLS--VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
              +  K     A     +  NP     V+ P  K  G    T+E++Q   +   E    
Sbjct: 162 IYSIPLKHIVTTAHYNGKIPRNPFAMYHVD-PDHKERGF--LTEEELQALGAIKLENPNF 218

Query: 193 RLAFEFLL---YSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDGFMKLL 245
            LA +  L   ++G+   D       ++           K QKTG    V+L D  M+++
Sbjct: 219 ALARDLFLFGCWTGISFIDIKNLTTDNVVEINGALWIVSKRQKTGVPFQVKLMDIPMQII 278

Query: 246 AM-TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302
               P  K+    N      +    +   K+ A K G+ K  S H  R   A ++ + G 
Sbjct: 279 KRYEPFRKDKRLFNIG----SLDMVNKRIKSIARKCGIEKPVSFHLSRHSFAVMALNYGM 334

Query: 303 TAHELMATYGWKTVDQAETYTKGADRI 329
               +    G   +   + Y K  +  
Sbjct: 335 PIESVSKILGHTDIKTTQIYAKVTNTK 361


>gi|225010748|ref|ZP_03701217.1| integrase family protein [Flavobacteria bacterium MS024-3C]
 gi|225005119|gb|EEG43072.1| integrase family protein [Flavobacteria bacterium MS024-3C]
          Length = 351

 Score = 83.9 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 44/269 (16%), Positives = 82/269 (30%), Gaps = 14/269 (5%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF 136
           EY K +       N   +++S  +   +            +     V    +  SS    
Sbjct: 85  EYLKISLNLKHKENYTKAYKSELNYSYKLLLRVSKSAKYERRDIIKVLEYYNNSSSYNSL 144

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP-RLA 195
           L +++VLF  A        NP    +R K K    +P+  ED+    +   + +    L 
Sbjct: 145 LKNLKVLFNKAEELGL-ENNPTKGFKRKKAKANLNKPF--EDISAILNEIKDFNHNLYLC 201

Query: 196 FEFLLYSGLRC-SDSCRAGVQHLQNNIFSIK----TQKTGTIITVELPDGFMKLLAMTPI 250
                   LR   +           ++  IK      K+G    V +P    +LL     
Sbjct: 202 CIMTYGCLLRPHREVRELTWGDFTADLSYIKLSGSRNKSGRNRIVPVPSYIKELLN--KG 259

Query: 251 GKETFFINNDKQKMNATQF---SIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHEL 307
                      +  N   F      FK  +     +++ +  R   A        +  +L
Sbjct: 260 DNNLNIFTGTTKAPNPDYFKTIWGRFKKVSKLLEQDQTLYSFRHSGAIEIYKRTGSLSKL 319

Query: 308 MATYGWKTVDQAETYTKGADRIRLGIKNS 336
               G  ++  + TY +G +   L   + 
Sbjct: 320 QKAMGHSSLAVSLTYLRGLEVSELEESDM 348


>gi|317501620|ref|ZP_07959813.1| integrase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|316896997|gb|EFV19075.1| integrase [Lachnospiraceae bacterium 8_1_57FAA]
          Length = 368

 Score = 83.9 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 59/367 (16%), Positives = 106/367 (28%), Gaps = 59/367 (16%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEY 78
           G   Y +          P P      P+            E       K  T   L   Y
Sbjct: 5   GNTKYVYAWRLTP--TDPTPKGKREKPSLRELEQQIRRDIEDGIDSTGKKMT---LCQLY 59

Query: 79  -RKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRSGVESRKHTP---SSA 133
            +++    ++  +++   E     +   K G      I     +      K      ++ 
Sbjct: 60  AKQNTQRANVKKSTQKQREQLMRLLKEDKLGARSIDTIKPSDAKEWALRMKDKGFSYNTI 119

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPC--LSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
                S++  F  A++ + V  NP      E  +  T+     T+E  Q   SF    + 
Sbjct: 120 NNHKRSLKASFYIAIQDDCVRKNPFDFKLSEVIENDTKEKVALTEEQEQALLSFIKADNV 179

Query: 192 PRLAFE---FLLYSGLRCSDSCRAGVQHLQ----------------NNIFSIKTQKTGTI 232
               ++    LL +GLR S+ C   V  +                    + I+T KT + 
Sbjct: 180 YHKYYDDVLILLKTGLRISELCGLTVADIDFKNEVVIIDHQLLKSKEQGYYIETPKTKSG 239

Query: 233 IT-VELPDG----FMKLLAMTPIG--------KETFFINNDKQKMNATQFSIWFKAKATK 279
              V L       F +++   P              F+N+  +   A  +++ F     K
Sbjct: 240 ARQVPLSRETIQAFQRVMKKRPKAEPFVIDGRGNFLFVNHKGKPKVAIDYNMLFVRMVEK 299

Query: 280 AGVNK--------SAHGVRKFSATISADAGATAHELMATYGWKTVD-------QAETYTK 324
              +         + H +R    T  A       +L    G   +         A   T 
Sbjct: 300 YNKHHKDNPLPHITPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISITMNWYAHASIDTA 359

Query: 325 GADRIRL 331
            ++  RL
Sbjct: 360 KSEVQRL 366


>gi|257469860|ref|ZP_05633952.1| integrase/recombinase [Fusobacterium ulcerans ATCC 49185]
 gi|317064089|ref|ZP_07928574.1| DNA integration/recombination/inversion protein [Fusobacterium
           ulcerans ATCC 49185]
 gi|313689765|gb|EFS26600.1| DNA integration/recombination/inversion protein [Fusobacterium
           ulcerans ATCC 49185]
          Length = 333

 Score = 83.9 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 42/275 (15%), Positives = 85/275 (30%), Gaps = 42/275 (15%)

Query: 88  AVNSRISFESYF-----------DQIIRKSGDFDYRKITTKHIRSGV----ESRKHTPSS 132
           +  +   +  Y            + I  +      + +  + +   +    E RK   +S
Sbjct: 33  SQKTLKDYMFYLKDFLNFVYEGEEGIRAEELIELMKDVEKQDVEDYIAYLVEDRKLKKTS 92

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW--TKEDMQQFKSFWSEGS 190
             + ++S++ L+K   +  Y   NP   VE  K           + ED+++    +    
Sbjct: 93  INKIISSLKSLYKEMEKNGY--ENPFKYVELFKVSRNIDNVLKLSFEDIKKIIGQYQING 150

Query: 191 ----QPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDGFM 242
               +       L Y+G+R  +      +H+     N    ++  K+G      + D  +
Sbjct: 151 EKDYRNVNILYTLFYTGMRSQELINLKFKHILEREGNYYIKLEETKSGREQYKSVHDILI 210

Query: 243 K-------------LLAMTPIGKETFFI--NNDKQKMNATQFSIWFKAKATKAGVNKSAH 287
           K              +  + I     F        +++        +      G + S H
Sbjct: 211 KKLKEYKEYLQSLYNIDDSDIEDHYVFSSSTEKNTQLSYRALYDLVQNMGKLIGKDISPH 270

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
            VR   AT  +  GA   E+    G       E Y
Sbjct: 271 NVRHAVATELSINGADILEIRDFLGHADTRVTEVY 305


>gi|254508894|ref|ZP_05121003.1| integrase [Vibrio parahaemolyticus 16]
 gi|219548208|gb|EED25224.1| integrase [Vibrio parahaemolyticus 16]
          Length = 391

 Score = 83.9 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 53/343 (15%), Positives = 108/343 (31%), Gaps = 40/343 (11%)

Query: 20  KIIYYFRKGHGRRIRLPYPHE---STFIPAYMSALTG--------STPKREYINSPRKKP 68
           K  +Y+R    +R  L    +               G         T + E   +  ++ 
Sbjct: 41  KYYFYYRLNGKQRNYLIGSADSMTPAQARDLAKEKAGLVASGVDVQTQRAEERKAEVRRS 100

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV-ESRK 127
            TL   + E+ K   +      ++ S++S  +       D     I    I+  V + RK
Sbjct: 101 LTLGKYLEEHYKDYLFAMNPKTAKQSYQSIANTF-AFLADKPLEDIKAWDIQQWVTDKRK 159

Query: 128 --HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
               P++       ++     AV  E++  +   SV+  K     IR  ++ +     S 
Sbjct: 160 LGRAPATIEYTFNRLKAALNRAVEWEFIESHNLSSVKIAKEDNTRIRYLSELEEAALLSA 219

Query: 186 W---------SEGSQPRLAF-----EFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQ 227
                        S     F        +++G+R  +      + +      +       
Sbjct: 220 LAAREAQLCEDNDSHQYADFFTPLITLAMHTGMRKGEMLTLRWESVSFENRYLTILSENA 279

Query: 228 KTGTIITVELPDGFMKLL---AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-N 283
           K+    T+ + D    +L       + +E  F++  K+    + F   ++     AG+ N
Sbjct: 280 KSKKKRTIPMNDTVFNMLSQWRAQNLNEEYVFVHEGKR---VSFFQYPWQNLLKAAGISN 336

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
              H +R   A+    AG   + +    G   +     Y   A
Sbjct: 337 FRFHDLRHHFASKLVMAGVDLNVVRELLGHADLKMTLRYAHLA 379


>gi|126698677|ref|YP_001087574.1| integrase [Clostridium difficile 630]
 gi|115250114|emb|CAJ67935.1| Integrase Tn1549-like, CTn4-Orf34 [Clostridium difficile]
          Length = 397

 Score = 83.9 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 40/285 (14%), Positives = 80/285 (28%), Gaps = 48/285 (16%)

Query: 85  GSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRSGVESRKHT---PSSAIQFLTSM 140
            ++   ++   +     +   K G      +     +      K       +      S+
Sbjct: 96  ANVGHGTKQGRKQLMRILQEDKLGACRIENVKLSDAKEWALRMKEKGYGFKTINNHKRSL 155

Query: 141 RVLFKWAVRQEYVAINPC--LSVERPKRKTEGIRPWTKEDMQQFKS---FWSEGSQPRLA 195
           +  F  A++ + +  NP         +  TE   P +      F S         +    
Sbjct: 156 KAAFYTAIQDDCIRKNPFDFQLNTVLEDDTEPKEPLSPTQEAAFLSFVQHDKVYQKYYDE 215

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT------------------QKTGTIITVEL 237
              LL +GLR S+ C      +  +   I                     K+G  I + +
Sbjct: 216 IIILLGTGLRISELCGLTEADIDLDKQLINVDHQLLKIADVGYYVETPKTKSGNRI-IPM 274

Query: 238 PDGFMKLLAMTPIGKET------------FFINNDKQKMNATQFSIWFK------AKATK 279
            +  ++        ++              F+N +     A  +   F+       K  K
Sbjct: 275 SEKVLEAFQRVLNKRKYTQPVILEGYTKFLFLNRNGLPKVAVNYESMFRGLVRKYNKTQK 334

Query: 280 AGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
             + K  + H +R    T  A+AG     L    G   ++    Y
Sbjct: 335 VALPKVMTPHTLRHTFCTTLANAGMNPKALQYIMGHSNINMTLNY 379


>gi|296271734|ref|YP_003654365.1| integrase family protein [Arcobacter nitrofigilis DSM 7299]
 gi|296095909|gb|ADG91859.1| integrase family protein [Arcobacter nitrofigilis DSM 7299]
          Length = 366

 Score = 83.9 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 41/305 (13%), Positives = 99/305 (32%), Gaps = 33/305 (10%)

Query: 57  KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF---DQIIRKSGDFDYRK 113
           +     + +K+  ++ +   +Y +  ++ +    ++  +         ++      +   
Sbjct: 69  EEPPAMANKKQKNSIAF---KYLQDKYFETRRE-TKSKYSDIVTANKHLVPFFEKKNLET 124

Query: 114 ITTKHIRSGVESR---------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP 164
           +T + I++  +           + +P S    LTS   +  + +++E +  +    +E+ 
Sbjct: 125 LTKEDIKALTKLLKTKTTPKGTQLSPKSRNNILTSFASIINYGLKEELIKNDVTKYIEKE 184

Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIF 222
           +   E  R    E++ +         +  L  +  L +G R           L   N I 
Sbjct: 185 RIDNERERYLELEEINKLYEEVEHNPRLYLFCKLALTTGGRLGTILNISKMDLDFSNQII 244

Query: 223 SIKTQKTGTIITVELPDG---FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK 279
           ++K  K  +     L D     +         ++  FI    +     +  +        
Sbjct: 245 TLKDFKNNSTYKTFLTDDVTNLLSNYCKNLNQQDKIFI----EPTTIQRQILKILHSLFN 300

Query: 280 AGVNK-------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRL 331
            G++K         H +R   A+  A  G     +      + +     Y K A D  R 
Sbjct: 301 VGIDKEDRKNLVVLHTLRHTFASHLAIKGTPIFTIQKLMNHRDIKMTLRYAKLAPDSGRC 360

Query: 332 GIKNS 336
            I+N 
Sbjct: 361 AIQNL 365


>gi|264678575|ref|YP_003278482.1| tyrosine recombinase XerD [Comamonas testosteroni CNB-2]
 gi|262209088|gb|ACY33186.1| tyrosine recombinase XerD [Comamonas testosteroni CNB-2]
          Length = 333

 Score = 83.9 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 41/292 (14%), Positives = 85/292 (29%), Gaps = 62/292 (21%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHTPSSAIQFLTSMRVL 143
           ++ +  ++       IR  G      + +  + + +      RK + S+  Q L ++   
Sbjct: 30  SLRTEQAYVHRVRTFIRFHGVRHPATLGSSEVEAFLSWLANERKVSASTHRQALAALLFF 89

Query: 144 FK--WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201
           +         ++       + RP+         T E++ +   F  EG   RL  + L  
Sbjct: 90  YGKVLCADLPWLQ-----EIGRPRLSRRLPVVLTPEEVVRIPGFL-EGVH-RLFAQLLYG 142

Query: 202 SGLRCSDSCRAGVQH--LQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN 259
           +G+R S+  +  V+     +    ++  K      + LP+     L         +++ +
Sbjct: 143 TGMRISEGLQLWVKDLDFDHGTIIVREGKGSKDRALMLPESLAPGLREQLARARAWWLKD 202

Query: 260 ---------------------------------------------DKQKMNATQFSIWFK 274
                                                         +  M    F   FK
Sbjct: 203 QAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFK 262

Query: 275 AKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
               +AGV K  + H +R   A     +G     +    G   +     YT 
Sbjct: 263 RAVDEAGVAKPATPHTLRHSFAAALLRSGYDIRTVQDLLGHSDISTTMIYTH 314


>gi|317505585|ref|ZP_07963495.1| integrase [Prevotella salivae DSM 15606]
 gi|315663297|gb|EFV03054.1| integrase [Prevotella salivae DSM 15606]
          Length = 429

 Score = 83.9 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 41/264 (15%), Positives = 91/264 (34%), Gaps = 24/264 (9%)

Query: 86  SLAVNSRISF---ESYF-DQIIRKSGDFDYRKITTKHIRSGVESR-------KHTPSSAI 134
           S+   +   +   + +F + +  K G  D R ++        +            P++A 
Sbjct: 146 SVEAATLQKYNVCKKHFSNFLRDKYGRSDIR-LSELGYIVIHDFDIYLRTVVGQNPNTAT 204

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-WSEGSQP- 192
           + + + + +     +   +  +P L++ R   +       T E++ +  +  +  G    
Sbjct: 205 RMMKTFKTITILGRKLGVLHHDPFLNI-RFHMEPVNRGFLTDEEILKIANKDFGIGRLEL 263

Query: 193 -RLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
            R  F F  ++GL   D      +++           K QKT     V L D    ++A 
Sbjct: 264 VRDVFVFSCFTGLAYIDVYNLAPENIVTLNGKQWIMTKRQKTSVETNVLLLDIPKSIIA- 322

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAH 305
                +T+        +   + + + K  A   G+ K  + H  R   AT+S   G    
Sbjct: 323 -KYSGKTYRDGKLFPMLTNQKLNSYLKEIADICGIKKNLTFHLARHTFATMSLSKGVPIE 381

Query: 306 ELMATYGWKTVDQAETYTKGADRI 329
            +    G   +   + Y +  ++ 
Sbjct: 382 SVSKMLGHTNIKTTQIYARITNKK 405


>gi|307564939|ref|ZP_07627459.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
 gi|307346379|gb|EFN91696.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
          Length = 410

 Score = 83.9 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 41/264 (15%), Positives = 91/264 (34%), Gaps = 24/264 (9%)

Query: 86  SLAVNSRISF---ESYF-DQIIRKSGDFDYRKITTKHIRSGVESR-------KHTPSSAI 134
           S+   +   +   + +F + +  K G  D R ++        +            P++A 
Sbjct: 127 SVEAATLQKYNVCKKHFSNFLRDKYGRSDIR-LSELGYIVIHDFDIYLRTVVGQNPNTAT 185

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-WSEGSQP- 192
           + + + + +     +   +  +P L++ R   +       T E++ +  +  +  G    
Sbjct: 186 RMMKTFKTITILGRKLGVLHHDPFLNI-RFHMEPVNRGFLTDEEILKIANKDFGIGRLEL 244

Query: 193 -RLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
            R  F F  ++GL   D      +++           K QKT     V L D    ++A 
Sbjct: 245 VRDVFVFSCFTGLAYIDVYNLAPENIVTLNGKQWIMTKRQKTSVETNVLLLDIPKSIIA- 303

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAH 305
                +T+        +   + + + K  A   G+ K  + H  R   AT+S   G    
Sbjct: 304 -KYSGKTYRDGKLFPMLTNQKLNSYLKEIADICGIKKNLTFHLARHTFATMSLSKGVPIE 362

Query: 306 ELMATYGWKTVDQAETYTKGADRI 329
            +    G   +   + Y +  ++ 
Sbjct: 363 SVSKMLGHTNIKTTQIYARITNKK 386


>gi|299142888|ref|ZP_07036015.1| integrase [Prevotella oris C735]
 gi|298575617|gb|EFI47496.1| integrase [Prevotella oris C735]
          Length = 410

 Score = 83.9 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 41/264 (15%), Positives = 91/264 (34%), Gaps = 24/264 (9%)

Query: 86  SLAVNSRISF---ESYF-DQIIRKSGDFDYRKITTKHIRSGVESR-------KHTPSSAI 134
           S+   +   +   + +F + +  K G  D R ++        +            P++A 
Sbjct: 127 SVEAATLQKYNVCKKHFSNFLRDKYGRSDIR-LSELGYIVIHDFDIYLRTVVGQNPNTAT 185

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-WSEGSQP- 192
           + + + + +     +   +  +P L++ R   +       T E++ +  +  +  G    
Sbjct: 186 RMMKTFKTITILGRKLGVLHHDPFLNI-RFHMEPVNRGFLTDEEILKIANKNFGIGRLEL 244

Query: 193 -RLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
            R  F F  ++GL   D      +++           K QKT     V L D    ++A 
Sbjct: 245 VRDVFVFSCFTGLAYIDVYNLAPENIVTLNGKQWIMTKRQKTSVETNVLLLDIPKSIIA- 303

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAH 305
                +T+        +   + + + K  A   G+ K  + H  R   AT+S   G    
Sbjct: 304 -KYSGKTYRDGKLFPMLTNQKLNSYLKEIADICGIKKNLTFHLARHTFATMSLSKGVPIE 362

Query: 306 ELMATYGWKTVDQAETYTKGADRI 329
            +    G   +   + Y +  ++ 
Sbjct: 363 SVSKMLGHTNIKTTQIYARITNKK 386


>gi|262369098|ref|ZP_06062427.1| phage integrase [Acinetobacter johnsonii SH046]
 gi|262316776|gb|EEY97814.1| phage integrase [Acinetobacter johnsonii SH046]
          Length = 386

 Score = 83.9 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 56/366 (15%), Positives = 112/366 (30%), Gaps = 48/366 (13%)

Query: 4   SLRLPPFVTKERTRHGKIIYYF-RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY-I 61
           +  +P  V   R R+G I  YF R+     I LP+P  +  I A          K E+ I
Sbjct: 7   TKSMPTGV---RIRNGAIQIYFERRKKEYNITLPHPPSAEGISAAAKIRAQLVTKAEWGI 63

Query: 62  NSPRKKPTTLKWLISE--------------YRKSAHWGSLAVNSRISFESYFD-QIIRKS 106
            +          L+ +               +K   +     +++  + +  +   +   
Sbjct: 64  LTDSDIAEARGQLVDDDAVIVNGGILFQEVAQKYLKFCESNTDTKKGYLNILEFHWMGYF 123

Query: 107 GDFDYRKITTKHIRSGVESRK-HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165
                  I+ ++I+  +  R   T  +    L  +R +F  A+  +++  NP  S+   K
Sbjct: 124 ALMPINSISIENIKEAIIDRDFKTAKTLNNCLIPLRGVFDCAMENKFITENPLDSIRNKK 183

Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRLA-----FEFLLYSGLRCSDSCRAGVQHLQ-- 218
            + +   P+++ +M           +         +E   ++G R S+            
Sbjct: 184 VQVDIPDPFSRPEMDAILENLKTTLKGDEILYYWYYELAFWTGCRPSELIALKESDFDFF 243

Query: 219 NNIFSIK----------TQKTGTIITVELP----DGFMKLLAMTPIGK-----ETFFINN 259
           + +F +             KT T   V L         +L+                   
Sbjct: 244 SGMFKVNKSRVRGVEKNVTKTHTAREVCLNARSKKAAQELIKYKKDRNIQSKYLMLCPET 303

Query: 260 DKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
            +   N         A     G+ ++ A+  R   AT+    G     +    G      
Sbjct: 304 GEPFFNEKPPRNRLVAALKACGIRHRPAYNARHTYATMMLMDGLNPVFVSNQMGHSLQMM 363

Query: 319 AETYTK 324
            + Y K
Sbjct: 364 MKRYAK 369


>gi|253995768|ref|YP_003047832.1| integron integrase [Methylotenera mobilis JLW8]
 gi|253982447|gb|ACT47305.1| integron integrase [Methylotenera mobilis JLW8]
          Length = 321

 Score = 83.9 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 38/305 (12%), Positives = 88/305 (28%), Gaps = 60/305 (19%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH----TPSSAIQFLTSM 140
              ++ +   +  +  + +        R++    + + +         + S+  Q L+++
Sbjct: 18  KHYSIRTETQYLQWVKRFVLFHDKKHPREMGGAEVEAFLSHLATHGNVSSSTQNQALSAL 77

Query: 141 RVLFKWAVRQEYVAINP-CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199
             L++  +        P    V R K+        +K+++ +      + +   +A   L
Sbjct: 78  LFLYREVLGLSL----PWMDDVVRAKKPQRLPVVLSKQEVAKILD-HMQATHGLIAR-LL 131

Query: 200 LYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAM---------- 247
             +G+R  + CR  VQ +        I+  K        LP   ++ L            
Sbjct: 132 YGTGIRIMECCRLRVQDIDFDRGELLIRNGKGAKDRVTMLPKSLIEPLKAHLVWRKALFH 191

Query: 248 ---TPIGKETFFI--------------------------------NNDKQKMNATQFSIW 272
                   E +                                     +  ++       
Sbjct: 192 ADEAKGKAEVYLPDALERKYVNAATSWAWQYVFCSGSYSVDPRSGRERRHHLDEKLVQRA 251

Query: 273 FKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
            K     AG++K  + H  R   AT   ++G     +    G   V     YT   ++  
Sbjct: 252 VKKAVGLAGIDKLATPHTFRHSFATHLLESGYDIRTVQELLGHSDVSTTMIYTHVLNKGG 311

Query: 331 LGIKN 335
            G+ +
Sbjct: 312 RGVSS 316


>gi|204930834|ref|ZP_03221707.1| prophage lambda integrase [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|204320293|gb|EDZ05497.1| prophage lambda integrase [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
          Length = 406

 Score = 83.9 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 56/351 (15%), Positives = 115/351 (32%), Gaps = 51/351 (14%)

Query: 16  TRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY----------INSPR 65
            R GKI + ++     R       E         A T    +R                R
Sbjct: 47  KRTGKIYWQYKHPVSGRFHSLGTDEVEAKKVASEANTIIAEQRTRQVLSVNDRLARMKGR 106

Query: 66  KKPTTLKWLISEYRKSAHWG----SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121
           +   T+   I +Y +          L  NS               G    + I+   I  
Sbjct: 107 RTDITVTEWIDKYIEIQDERLKHRELRPNSYRQKAKPVRLFREHCGMQYLKDISALDISE 166

Query: 122 GVESRKHTPSSAIQFLTSMRVL----FKWAVRQEYVAI--NPCLSVERPKRKTEGIRPWT 175
             ++ K       +    +R++    FK A    +V    NP L+ ++P+ K    R  +
Sbjct: 167 ITDAVKAEGH--NRMAQVVRMVLIDVFKEAQHNGHVPPGYNPALATKQPRNKVTRQR-LS 223

Query: 176 KEDMQQ-FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234
            E+ +  +++   +    +      + +G R  D C    + + +++  ++ +KTG+ + 
Sbjct: 224 LEEWKTIYEAAEKQEPYLQCGMLLAIITGQRLGDICNMKFKDIWDDMLHVEQEKTGSRLA 283

Query: 235 VELPDGFMKLLAMTPIG-----------------KETFFINNDKQKMNATQFSIWFKAKA 277
           + L D   + L +T                    + T    N   +++ +  +  FK   
Sbjct: 284 IPL-DLKCEALGLTLRDVVSKCRDAVISKYLVHFRHTTSQANRGDQVSTSSLTSTFKKAR 342

Query: 278 TKAGVNK------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
            ++G+        + H  R  S  +  + G    +L    G K+    + Y
Sbjct: 343 DRSGLKWDKGSPPTFHEQRSLSERLYREQGVDTQKL---LGHKSRKMTDKY 390


>gi|294012026|ref|YP_003545486.1| putative integrase [Sphingobium japonicum UT26S]
 gi|292675356|dbj|BAI96874.1| putative integrase [Sphingobium japonicum UT26S]
          Length = 451

 Score = 83.9 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 35/259 (13%), Positives = 78/259 (30%), Gaps = 24/259 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLF 144
             +   ++         II        +    +    G    +  P +A + +  +  + 
Sbjct: 144 RRVKDLTKADVNKLMKDIIAGKSRISVKTKKLR----GRAIVRGGPGTATRTIGLLGGIL 199

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED-------MQQFKSFWSEGSQPRLAFE 197
            +AV    +  NP   V++PK      R  T+++       +++        +   +  +
Sbjct: 200 TYAVDAGIIETNPTHGVKKPKYAIRTRR-LTEDEYRTLGEMLREAVKTEKYATTVEIIRQ 258

Query: 198 FLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTGTIIT---VELPDGFMKLLAMTPIGK 252
             L +G R S+             +   +   K G  +    + + +   +   +     
Sbjct: 259 IAL-TGCRRSEIIGLKWAEADTASSCLRLSDSKEGESVRPIGLPVVEFLDERRKVLDGSV 317

Query: 253 ETFFINNDKQKMNATQFS----IWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELM 308
            T+       +     F      W +     A  + + H +R   A+I+ D G T   + 
Sbjct: 318 GTYVF--PGPRAEDGAFGGFPNHWEQIFRNSALADVTPHVLRHSFASIANDLGFTEVTIA 375

Query: 309 ATYGWKTVDQAETYTKGAD 327
           A  G         Y    D
Sbjct: 376 ALVGHAKGSVTSKYIHSLD 394


>gi|193066294|ref|ZP_03047345.1| phage integrase family protein [Escherichia coli E22]
 gi|193070909|ref|ZP_03051840.1| phage integrase family protein [Escherichia coli E110019]
 gi|260854608|ref|YP_003228499.1| integrase [Escherichia coli O26:H11 str. 11368]
 gi|192926066|gb|EDV80709.1| phage integrase family protein [Escherichia coli E22]
 gi|192955763|gb|EDV86235.1| phage integrase family protein [Escherichia coli E110019]
 gi|257753257|dbj|BAI24759.1| integrase [Escherichia coli O26:H11 str. 11368]
          Length = 372

 Score = 83.9 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 59/355 (16%), Positives = 112/355 (31%), Gaps = 42/355 (11%)

Query: 17  RHGKIIYYFRKG-HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT----- 70
           R G++ Y ++    G+   L          A  +    +  + EY      +  +     
Sbjct: 22  RTGRVYYQYKNPVTGKFHGLGTDKGKAEKIASTANQRIAAAEAEYFMRKIDESPSATKRR 81

Query: 71  ---LKWLISEYRKSAHWG----SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
              LK  +  Y K          +A  +          ++ + G+   +++  +     +
Sbjct: 82  GIRLKAWVDRYLKIQDTRLKNGDIAATTHKEKARMAAYLVSRLGNHPLKELEVRDFALIL 141

Query: 124 ESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAI--NPCLSVERPKRKTEGIRPWTKEDM 179
           +    K   S+A         ++K A     V    NP  +  +P  K    R  T ED 
Sbjct: 142 DEWLDKDMVSTARVNRGLWVDIYKEAQHAGEVPPGWNPPEATRKPIPKVTRAR-LTLEDW 200

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239
           Q+  +   E    R A    + +G R  D C      + N    I   KTG  + + L  
Sbjct: 201 QKIYNATPEKHFIRNAMLLAIVTGQRRDDICHMRFSDVWNEHLHITQGKTGMRLALPLTL 260

Query: 240 G-------FMKLLA-MTPIGKETFFINNDK----QKMNATQFSIWFKAKATKAGV----- 282
                     +++          + I++      + M+    S +F      AG+     
Sbjct: 261 RCDAIGITLKEVIDGCRDRILSPYLIHSRHQKQPKPMSKDNLSDYFAKARDLAGITPPAG 320

Query: 283 --NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY--TKGADRIRLGI 333
               + H  R  S  +    G     L    G K     + Y  T+G + ++L +
Sbjct: 321 KTPPTFHEQRSLSERLYRTQGIDTKTL---LGHKVQATTDRYNDTRGQEWVKLVV 372


>gi|167580360|ref|ZP_02373234.1| putative phage integrase [Burkholderia thailandensis TXDOH]
          Length = 394

 Score = 83.9 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 51/310 (16%), Positives = 107/310 (34%), Gaps = 32/310 (10%)

Query: 52  TGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY 111
            G+ P  E      +K  +++ LI++YR+     +LA +++ S+    D++ R  G    
Sbjct: 66  QGTNPAVEKRKERARKDWSVRQLIADYRE-RVLVTLANSTQRSYGRNLDRVERGMGSLSV 124

Query: 112 RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV-------ERP 164
           R +    + + +E  K            ++ +FK AV +  +  NPC  V       +RP
Sbjct: 125 RVVGAADVVAEIERTKLGWVETFTLWCVLKAIFKHAVGKRLIDANPCAGVALEAIIGKRP 184

Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIF 222
             +   +   T E++    +  +       A    L +G+R S+   +     HL    +
Sbjct: 185 PVRQRLM--LTHEELSVLMN-ANMRDVNLYAVRIALATGVRISELYTSLRANLHLDEARW 241

Query: 223 SIKTQKTGTIITVELPDGFMKL---LAMTPIGKETFFINNDKQKMNA-TQFSIWFKAKAT 278
            I   KTG  + + L    ++    L       E         +++     +   K    
Sbjct: 242 HIPASKTGPAMDIPLAPSVIEWFERLLDLAGTSEYILPARLSNRLDRHDGDTHVSKDAIR 301

Query: 279 KAGVNK------------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           +A ++             + H +R    +     G +          K       Y +  
Sbjct: 302 EA-IDYWIDNHEPQIRRFTPHDLRSTMKSHMRKLGVSRDISEMCLNHKLAGVEGIYDQYT 360

Query: 327 --DRIRLGIK 334
             D  ++ ++
Sbjct: 361 YWDERKVALE 370


>gi|116626671|ref|YP_828827.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116229833|gb|ABJ88542.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 265

 Score = 83.9 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 35/234 (14%), Positives = 86/234 (36%), Gaps = 23/234 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG----VESRKHTPSSAIQFLTSM 140
            + +  +  ++     +           ++  +HIR      V+ RK  P + +  ++++
Sbjct: 15  RNYSQATARAYVGAIQRFAEHF-HRSPDQLGPEHIREYQLHLVQDRKLHPRTVMIQMSAL 73

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-PWTKEDMQQFKSFWSEGSQPRLAFEFL 199
           R  F+  +++ +   +    +  PK     I    +++++ +  +  +   + R     L
Sbjct: 74  RFFFRKVLKRRFDRDD----LPLPKLLRRQIPMVLSRDEVARLIA-AAGNLRHRTILMAL 128

Query: 200 LYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMK----LLAMTPIGKE 253
             +G+R ++ C   ++ +        I+  K G    V LP   +          P    
Sbjct: 129 YATGMRRAELCHLRIEDIDKERMVLHIRQGKGGKDREVPLPPKLLAQLRIHYRALPHRSA 188

Query: 254 TFFINNDKQ----KMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAG 301
             F +   +     M         +  A +AG+ KS   H +R ++A+ +   G
Sbjct: 189 WVFPSLQSRRPDQPMTEKAVWHACRQAARRAGITKSVHPHTLRHYAASRTMPRG 242


>gi|307821936|ref|ZP_07652168.1| integrase family protein [Methylobacter tundripaludum SV96]
 gi|307823188|ref|ZP_07653418.1| integrase family protein [Methylobacter tundripaludum SV96]
 gi|307824260|ref|ZP_07654486.1| integrase family protein [Methylobacter tundripaludum SV96]
 gi|307825345|ref|ZP_07655564.1| integrase family protein [Methylobacter tundripaludum SV96]
 gi|307733520|gb|EFO04378.1| integrase family protein [Methylobacter tundripaludum SV96]
 gi|307734640|gb|EFO05491.1| integrase family protein [Methylobacter tundripaludum SV96]
 gi|307735963|gb|EFO06810.1| integrase family protein [Methylobacter tundripaludum SV96]
 gi|307736502|gb|EFO07347.1| integrase family protein [Methylobacter tundripaludum SV96]
          Length = 291

 Score = 83.9 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 36/265 (13%), Positives = 82/265 (30%), Gaps = 35/265 (13%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRK--ITTKHIRSGVESRKHTPSSAIQFLTSMRV 142
             L+  ++ S+     +     G           +  +  +     +P S    LT ++ 
Sbjct: 22  RKLSPKTQASYIRVVKRFAGFLGRSPDTASVEDLRRYQLHLVDHGISPISLNATLTGLKF 81

Query: 143 LFKWAVRQEYVAINPCLSVERP--KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200
           LF+  + +      P L  +        +     ++E++ +  +      + + A     
Sbjct: 82  LFETTLDR------PELLTKMHPVHVPHKLPVVLSREEVARLIAAVD-NLKHQTALSVAY 134

Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLAMTPIGKETFFIN 258
            +GLR S+     V  + +   +++    K        L    ++ L          F +
Sbjct: 135 GAGLRASEVVSLKVGDIDSQRMTLRIEQGKGSKDRYAMLSPVLLERLRAWWK-----FAH 189

Query: 259 NDKQ---------------KMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301
              +                ++  Q +    A A  A ++K  S H +R   AT   +  
Sbjct: 190 AQGKMLQGGWLFPGLDPIDPLSTRQLNRAIHAAAEAARIDKRVSMHTLRHSFATHLLEQK 249

Query: 302 ATAHELMATYGWKTVDQAETYTKGA 326
                +    G K ++    Y + A
Sbjct: 250 VDIRVIQVLLGHKKLETTALYAQVA 274


>gi|262274250|ref|ZP_06052061.1| integron integrase IntI4 [Grimontia hollisae CIP 101886]
 gi|262220813|gb|EEY72127.1| integron integrase IntI4 [Grimontia hollisae CIP 101886]
          Length = 320

 Score = 83.9 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 45/294 (15%), Positives = 86/294 (29%), Gaps = 59/294 (20%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH----TPSSAIQFLTSM 140
              A  S  ++  +    IR        ++    +   +    +    +P++    L ++
Sbjct: 16  KRYAKKSIEAYLHWIAAFIRFHNMKHPAEMGDVDVELFLSHLANQRDVSPNTQALALNAL 75

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200
             L++  ++Q        L     KRK +     T+E++++  S      Q  L    + 
Sbjct: 76  VFLYRDIIQQPLSV---SLDFAMTKRKQKLPVVLTREEVKKLLSLVPA--QHYLISALMY 130

Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLAMTPIGKETFFIN 258
            SGLR  ++ R  V+ +  +   ++    K G    V L       L        +    
Sbjct: 131 GSGLRLMEAVRLRVKDVDFDYQCLRIFDGKGGKSRIVTLATELQCPLKQQIDQVNSILCR 190

Query: 259 N----------------------------------------------DKQKMNATQFSIW 272
           +                                               +  +N  Q    
Sbjct: 191 DVNHHNYAGVWMPHRLRQKYASQSKSLPWQYLFPSHKVSIDPETRVIRRHHINEKQIQRS 250

Query: 273 FKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
               A KA + K  + H +R   AT    +GA    + A  G   V   + YT 
Sbjct: 251 INTTAKKANIRKHVTPHTLRHSFATHLLQSGADIRTVQAQLGHSDVRTTQVYTH 304


>gi|297618854|ref|YP_003706959.1| integrase family protein [Methanococcus voltae A3]
 gi|297377831|gb|ADI35986.1| integrase family protein [Methanococcus voltae A3]
          Length = 295

 Score = 83.9 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 41/266 (15%), Positives = 94/266 (35%), Gaps = 21/266 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH---IRSGVESRKHTP---SSAIQFLT 138
            + + ++  S+ +  +  +    +  +  IT        +   S    P   S+ I+ LT
Sbjct: 17  SARSKDTLKSYRASLNIFMNFFQEKSWETITIDDALFFYNNYRSHNGKPIQISTTIRRLT 76

Query: 139 SMRVLFKWAVRQEYVAINPCLS-VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE 197
            +   ++WA+  +Y+  NP    V+  + + +  +  +K   +   S   +     +   
Sbjct: 77  DVNRFYEWAIENKYLINNPLKLYVKTLRPQLKERQCLSKNQAKLLLSKIEDY-HYYIFTL 135

Query: 198 FLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFM-------KLLAMT 248
           FL+ +G+R S+     +  +   +    IK+ K      V + D  +       K     
Sbjct: 136 FLIKTGVRISEFINISLNDMDLSDRSIIIKSGKGNKDRYVFIDDELLLHIKQYLKYREFL 195

Query: 249 PIGKETFFINNDKQKMNATQFSIWFK----AKATKAGVNKSAHGVRKFSATISADAGATA 304
               +  F+     K++  Q S + +           +  + H +R    T++ ++    
Sbjct: 196 NPKIDRLFLTKSGYKLSEGQISDYRRYLRTISKDILNIIVTPHVLRHTFGTLACESNMNI 255

Query: 305 HELMATYGWKTVDQAETYTKGADRIR 330
             L    G   V+   TY   +   R
Sbjct: 256 EILSKIMGHANVNTTMTYIHSSKEFR 281


>gi|29348044|ref|NP_811547.1| putative integrase/recombinase [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|29339946|gb|AAO77741.1| putative integrase/recombinase [Bacteroides thetaiotaomicron
           VPI-5482]
          Length = 330

 Score = 83.9 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 38/282 (13%), Positives = 88/282 (31%), Gaps = 42/282 (14%)

Query: 85  GSLAVNSRISFESYFDQII--------RKSGDFDYRKITTKHIRSGVE----SRKHTPSS 132
            + + N+  S+  Y+ Q +        + +       +T +   + +      +  T  +
Sbjct: 26  KNQSHNTLTSYRDYYMQYLPFVAKRTGKHADKLLITDLTVERTNAFLNHIETDKGCTIQT 85

Query: 133 AIQFLTSMRVLFKWAVRQ--------EYVAINPCLSVERPKRKTEGIRP---WTKEDMQQ 181
             Q LT+++    +              ++  P   V+    +   +       K +M  
Sbjct: 86  RNQRLTAIKSFVHYVYNNAPEYMEWSRLMSTIPMKKVKVKVIEGSVLPAVSYLDKREMDA 145

Query: 182 FKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHL-QNN----IFSIKTQKTGTI 232
             +        G +      FL  +G+R S++    +  +  ++    +  I  +   + 
Sbjct: 146 LLNTPDRQTVQGRKDYAMLLFLYNTGVRASEAASLTIGSIIYDDASCPLVRIYGKGNKSR 205

Query: 233 ITVELPDGFMKLLAMTPIGKET--FFINNDKQKMNATQF-----SIWFKAKATK---AGV 282
                      +       +ET   F+N     M              KA AT    A  
Sbjct: 206 TCPLWNRTLNAIKPFMAGRRETERVFLNRYGNPMTRFGIYELLERNVIKATATAPTLAKK 265

Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             S H +R  +A    ++G     + +  G  +++    YT+
Sbjct: 266 RVSPHTLRHTAACHLYESGNDIVTIQSWLGHVSLNTTNIYTE 307


>gi|291522348|emb|CBK80641.1| Site-specific recombinase XerD [Coprococcus catus GD/7]
          Length = 350

 Score = 83.9 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 39/234 (16%), Positives = 78/234 (33%), Gaps = 31/234 (13%)

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS---- 190
           + L+S++  + +  ++  +  NP   V+ PK K + I      ++ Q       G     
Sbjct: 113 RKLSSLKSFYDYYFKKNLIRTNPPRQVDVPKIKNKNIIRLDPNEIAQLLDEAESGEKLSG 172

Query: 191 -----------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELP 238
                      +       LL +G+R S+     ++ +  N  +I+  +K G    +   
Sbjct: 173 RQLASHEKTKVRDVAILTLLLGTGIRVSECVGLNLEDVDFNNGAIRIIRKGGNEALIYFG 232

Query: 239 DGFMKLLAM-----------TPIGKETFFINNDKQKMNATQFSIWFKAK-ATKAGVNK-S 285
           D   + L                 +E  FI+ +K ++         K        V K +
Sbjct: 233 DEVSQALEAYMNGSRKTAEPAAGHEEALFISLNKTRITTRSVERLVKKYSRLVTTVKKIT 292

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD--RIRLGIKNSR 337
            H +R    T         + +  T G K V+  + +    D  R R+     +
Sbjct: 293 PHKLRSTFGTALYQETGDIYLVADTLGHKDVNTTKKHYAAIDEHRRRMAANVVK 346


>gi|291166248|gb|EFE28294.1| transposase [Filifactor alocis ATCC 35896]
          Length = 411

 Score = 83.9 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 47/339 (13%), Positives = 99/339 (29%), Gaps = 71/339 (20%)

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKH----IRSGV 123
            +L ++   Y  +     L   +  ++   ++  +R+  G     +I            +
Sbjct: 70  ASLNFVFDRYISTK--SELRETTYTNYMYMYNHFVREGFGKKKIGEIKYSDVLYFYYDLL 127

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV-----ERPKRKTEGIRPWTKED 178
            +R+   ++     T +   F+ AVR + +  NP   V     ++  +K       T E 
Sbjct: 128 NNRELQVNTLETIHTVLHPTFQLAVRDDIIRNNPSDGVMAEIKKKNTKKKNMRHALTIEQ 187

Query: 179 MQQFKSFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--------NNIFSIKTQ 227
            + F ++             F  LL +G R  +        +         N+  +   +
Sbjct: 188 QRAFMNYIASSPVFVHWNPIFTVLLGTGCRIGEVVGLRWSDIDMEKRTIDINHSMTYYPR 247

Query: 228 KT----------------GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI 271
           KT                G  I   +   +  L       KE  F       M+   FS 
Sbjct: 248 KTDTYKCEFKVSLPKTEAGVRILPMMQPVYEALETEYERQKEEGFCTAVVDGMSGFVFSN 307

Query: 272 WFKAKATKAGVNK------------------------------SAHGVRKFSATISADAG 301
            F      A +N+                              S H +R    +   +  
Sbjct: 308 RFGMIHNPAAINRVIRRILEAHNTEEIVKAKKEKREPIMIPHFSCHHLRHTFCSRFCENE 367

Query: 302 ATAHELMATYGWKTVDQA-ETYTKG-ADRIRLGIKNSRR 338
                +    G  +++   + Y +  +D+ +  I+N  +
Sbjct: 368 TNIKVIQEIMGHASIETTMDIYAEANSDKKKESIENLAK 406


>gi|271499297|ref|YP_003332322.1| integrase family protein [Dickeya dadantii Ech586]
 gi|270342852|gb|ACZ75617.1| integrase family protein [Dickeya dadantii Ech586]
          Length = 363

 Score = 83.9 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 42/323 (13%), Positives = 90/323 (27%), Gaps = 45/323 (13%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87
             G+R+R           A+          + ++   +    +L+ +I        W SL
Sbjct: 20  REGKRVR-KQFATKGEALAFERFTMEEIENKPWLG-EKADNRSLREIIDL------WFSL 71

Query: 88  AVNSRISFESY---FDQIIRKSGDFDYRKITTKHIRSGVESRKH--------------TP 130
              +    +      D I    G+   R+++        E R                 P
Sbjct: 72  YGRTLADPKRMMAKLDIICTGLGNPKARELSAADFAHYRELRLAGQMTDASGIPLAVVKP 131

Query: 131 SSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            +      ++  +F    +   + A NP   +   K   + +      ++++     +E 
Sbjct: 132 RTVNLEQRNLSAVFGTLKKLGHWDAPNPLSGLPTFKIAQQELAFLAPNEIKRVLDACAES 191

Query: 190 SQPRLAF--EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
           + P L    +  L +G R S++     Q +     +    K     TV +       +  
Sbjct: 192 ANPHLLLVTKICLATGARWSEAEGLSGQQVTPYRITYTRTKGKKNRTVPISRELYDEIPR 251

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV----NKSAHGVRKFSATISADAGAT 303
                         +  +       F+    + G+     +  H +R   A+     G  
Sbjct: 252 -----------KSGKLFSP--CRKAFERAINRTGIQLPDGQCTHVLRHTFASHFMMNGGN 298

Query: 304 AHELMATYGWKTVDQAETYTKGA 326
              L    G   +     Y   A
Sbjct: 299 ILVLRDILGHADIKMTMIYAHFA 321


>gi|257784371|ref|YP_003179588.1| integrase family protein [Atopobium parvulum DSM 20469]
 gi|257472878|gb|ACV50997.1| integrase family protein [Atopobium parvulum DSM 20469]
          Length = 391

 Score = 83.9 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 56/313 (17%), Positives = 94/313 (30%), Gaps = 49/313 (15%)

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTK---HIR 120
           + K T L  L+ EY         + N+    E +  + I  + G  D R IT+       
Sbjct: 61  KVKSTQLTDLLLEYVSIKRRNGASPNTTRQHEGFIRNHINGRLGKEDVRSITSSLFTSFE 120

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE----------- 169
             +  +  + +S I     +R  + + V       NP ++V +P R+             
Sbjct: 121 QDLLKKGLSRNSVINLHQFLRGAYNYFVSAGICDYNPLINVAKPSREVHEAVSIEEWGFA 180

Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLAFE--FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227
           GI       +          S+   AF     L +G+RC + C      +      I   
Sbjct: 181 GISTLINSRITTAIQEDEFNSRVVCAFAAWLSLVTGMRCGEVCAIRYSDVNMLYKHIHVS 240

Query: 228 -----------------KTGTIITVELPD-------GFMKL--LAMTPIGKETFFINNDK 261
                            K      + + D        +MKL    +  +   T  I+ D 
Sbjct: 241 GTVIEESYRKPYRRESTKGKRSRNIAITDSDISFISDYMKLQQAHIAFVESSTPLISLDG 300

Query: 262 QKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
             M  T  S  F        + +  + H +R   A+    +G     L    G       
Sbjct: 301 SYMRPTSVSRSFTRMRRTLQLPQGITFHSLRHTHASWCLASGVDLKTLSERLGHADPATT 360

Query: 320 -ETYTK---GADR 328
              Y+    G DR
Sbjct: 361 LRIYSHLLPGRDR 373


>gi|218704536|ref|YP_002412055.1| Integrase from bacteriophage origin [Escherichia coli UMN026]
 gi|298380191|ref|ZP_06989796.1| site-specific recombinase [Escherichia coli FVEC1302]
 gi|312968796|ref|ZP_07783003.1| prophage lambda integrase [Escherichia coli 2362-75]
 gi|218431633|emb|CAR12512.1| Integrase from bacteriophage origin [Escherichia coli UMN026]
 gi|298279889|gb|EFI21397.1| site-specific recombinase [Escherichia coli FVEC1302]
 gi|309701396|emb|CBJ00697.1| phage integrase [Escherichia coli ETEC H10407]
 gi|312286198|gb|EFR14111.1| prophage lambda integrase [Escherichia coli 2362-75]
 gi|320197548|gb|EFW72161.1| Phage integrase [Escherichia coli WV_060327]
          Length = 372

 Score = 83.9 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 60/355 (16%), Positives = 112/355 (31%), Gaps = 42/355 (11%)

Query: 17  RHGKIIYYFRKG-HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT----- 70
           R G++ Y ++    G+   L          A  +    +  + EY      +  +     
Sbjct: 22  RTGRVYYQYKNPVTGKFHGLGTDKGKAEKIASTANQRIAAAEAEYFMRKIDESPSATKRR 81

Query: 71  ---LKWLISEYRKSAHWG----SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
              LK  +  Y K          +A  +          ++ + G+   +++  +     +
Sbjct: 82  GIRLKAWVDRYLKIQDTRLKNGDIAATTHKEKTRMAAYLVSRLGNHPLKELEVRDFALIL 141

Query: 124 ESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAI--NPCLSVERPKRKTEGIRPWTKEDM 179
           +    K   S+A         ++K A     V    NP  +  +P  K    R  T ED 
Sbjct: 142 DEWLDKDMVSTARVNRGLWVDIYKEAQHAGEVPPGWNPPEATRKPIPKVTRAR-LTMEDW 200

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239
           Q+  +   E    R A    + +G R  D C      + N    I   KTG  + + L  
Sbjct: 201 QKIYNATPEKHFIRNAMLLAIVTGQRRDDICHMRFSDVWNEHLHITQGKTGMRLALPLTL 260

Query: 240 G-------FMKLLA-MTPIGKETFFINNDK----QKMNATQFSIWFKAKATKAGV----- 282
                     +++          + I++      + M+    S +F      AG+     
Sbjct: 261 RCDAIGITLKEVIDGCRDRILSPYLIHSRHQKQPKPMSKDNLSDYFAKARDLAGIIPPAG 320

Query: 283 --NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY--TKGADRIRLGI 333
               + H  R  S  +    G     L    G K     + Y  T+G + ++L I
Sbjct: 321 KTPPTFHEQRSLSERLYRAQGIDTKTL---LGHKVQATTDRYNDTRGQEWVKLVI 372


>gi|322390689|ref|ZP_08064202.1| phage integrase family site-specific recombinase [Streptococcus
           parasanguinis ATCC 903]
 gi|321142595|gb|EFX38060.1| phage integrase family site-specific recombinase [Streptococcus
           parasanguinis ATCC 903]
          Length = 377

 Score = 83.9 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 41/278 (14%), Positives = 92/278 (33%), Gaps = 45/278 (16%)

Query: 91  SRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP-----------SSAIQFLTS 139
           +     +Y   I     + +  K+T  HI    E  K  P           ++  + L  
Sbjct: 84  TSTQRNNYERHIKPYFKNTNLNKLTYDHIFEFREYLKTKPKKQNENEVLSYNTINKILIL 143

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS--FWSEGSQPRLAFE 197
           ++ +F   +R+  +  NP  ++ +   +   I+ W+ E+  +F+      E S   L F 
Sbjct: 144 LKKIFDTGIRKSLIDKNPVENLRKLPIRKPNIKFWSIEEFTRFRELIRDDEISYD-LFFV 202

Query: 198 FLLYSGLRCSDSCRAGVQHLQ---------------NNIFSIKTQKTGTIIT-VELPDGF 241
              ++G+R  +        +                NN   I T KT +    + +    
Sbjct: 203 IAFFTGMRMGEILALNWNDINLLTNTIYVTKTVYFVNNTSYINTTKTRSGTRNITINQKL 262

Query: 242 MKLLAMTPIGKETFF--INNDKQKM----------NATQFSIWFKAKATKAG-VNK-SAH 287
            ++L    + ++        + +++                  FK    +   + K   H
Sbjct: 263 AEMLKDWKVKQKEKLEEFTKNTEELQIIQSTPITITKNMIDKKFKQILERDKDLKKIRIH 322

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
            +R   A++  + G     +    G  ++    +TY+ 
Sbjct: 323 DLRHSHASLLINQGEDYLVVKERLGHASITTTIDTYSH 360


>gi|213417883|ref|ZP_03350981.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
          Length = 186

 Score = 83.9 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 56/161 (34%), Gaps = 13/161 (8%)

Query: 177 EDMQQFKSFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233
           +D+ +            + R   E +  +GLR S+     ++HL  +   +     G+  
Sbjct: 5   DDVNRLLDIDLNDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLDTGEVWVMGKGSKE 64

Query: 234 T--------VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-- 283
                    V   + ++ L  +    +E  F++   ++++A      F     K G+N  
Sbjct: 65  RRLPIGRNAVTWIEHWLDLRGLFASDEEALFLSKLGKRISARNVQKRFAEWGIKQGLNSH 124

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              H +R   AT   ++      +    G   +   + YT 
Sbjct: 125 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTH 165


>gi|167746743|ref|ZP_02418870.1| hypothetical protein ANACAC_01455 [Anaerostipes caccae DSM 14662]
 gi|167653703|gb|EDR97832.1| hypothetical protein ANACAC_01455 [Anaerostipes caccae DSM 14662]
          Length = 351

 Score = 83.9 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 38/264 (14%), Positives = 86/264 (32%), Gaps = 43/264 (16%)

Query: 109 FDYRKITTKHIRSGVE----------SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158
            D  +I +  +   +E            ++T     + ++S+R  + +  +++ +  NP 
Sbjct: 77  ADLDRIESVDLEEYMEYLKTYVSDDKRMQNTERGIFRKMSSLRTFYAYYYKRQLIKTNPT 136

Query: 159 LSVERPKRKTEGIRPWTKEDMQQFKSFWSEG----------------SQPRLAFEFLLYS 202
           L V+ P+   + I     +++     F  +G                 +       LL +
Sbjct: 137 LLVDMPRIHEKEIIRLEADEVASLLDFIEKGGDNLTGQKRMYYEKTKERDLAIITLLLGT 196

Query: 203 GLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET------ 254
           G+R S+     +  +   NN   +  +K    +TV   D     L     G  +      
Sbjct: 197 GIRVSELVGLDMNDVDFKNNGLHLI-RKGRKEMTVYFGDEVSDALLQYIEGSRSKIIPRE 255

Query: 255 -----FFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHEL 307
                 F +  ++++         K  A +       + H +R    T   +     + +
Sbjct: 256 GHENALFYSMQRKRIGVQAVQNLVKKYARQVTPLKKITPHKLRSTYGTALYEETDDIYLV 315

Query: 308 MATYGWKTVDQA-ETYTKGADRIR 330
               G   V+   + Y+  +D  R
Sbjct: 316 AEVLGHNDVNTTRKHYSAMSDTKR 339


>gi|149198071|ref|ZP_01875119.1| phage integrase [Lentisphaera araneosa HTCC2155]
 gi|149198416|ref|ZP_01875461.1| phage integrase [Lentisphaera araneosa HTCC2155]
 gi|149200078|ref|ZP_01877103.1| phage integrase [Lentisphaera araneosa HTCC2155]
 gi|149136836|gb|EDM25264.1| phage integrase [Lentisphaera araneosa HTCC2155]
 gi|149138422|gb|EDM26830.1| phage integrase [Lentisphaera araneosa HTCC2155]
 gi|149138983|gb|EDM27388.1| phage integrase [Lentisphaera araneosa HTCC2155]
          Length = 294

 Score = 83.9 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 34/273 (12%), Positives = 85/273 (31%), Gaps = 24/273 (8%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           + +      +      + A ++  ++     ++          ++  + ++        T
Sbjct: 4   SFQKYYRAMQLELKLQAKAKSTVDNYLRALRRVNDLIA-SPLDQLKEEELKLYFSELVDT 62

Query: 130 --PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              S+      ++   +++ +++E+      L + R  R        ++++     S   
Sbjct: 63  YSWSTVKMDRCALSFFYQYVLKREWKW----LEIVRIPRVKSLPDILSQDETLLILSHLE 118

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPD-GFMKL 244
           + ++ R     +   GLR S+  R     +        ++  K      V LP   +  L
Sbjct: 119 K-ARYRTCLTAIYSMGLRISEGVRIQTGDICKDRMRLHVRNSKGYKDRLVPLPQVTYQML 177

Query: 245 LAMTPIGKETFFI-----------NNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRK 291
                + +    +           +     M+       FKA    +G+ K  S H +R 
Sbjct: 178 RDYWVMHRNPLLLFPRYAGKSRSNSKTTLHMDKGGVQSAFKAALADSGLAKQVSVHSLRH 237

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK 324
             AT   +AG     +    G  +      Y+ 
Sbjct: 238 SYATHLVEAGVNLRVIQEILGHSSPATTAIYSH 270


>gi|38637799|ref|NP_942773.1| putative integrase/recombinase [Ralstonia eutropha H16]
 gi|32527137|gb|AAP85887.1| putative integrase/recombinase [Ralstonia eutropha H16]
          Length = 412

 Score = 83.9 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 51/337 (15%), Positives = 105/337 (31%), Gaps = 41/337 (12%)

Query: 13  KERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           + R RH       R G G R  L +  +  F+           P+R            ++
Sbjct: 74  RYRARH------VRPGPGDRAALRHLID--FLDRERLISAQRMPERRLTPIESCTQAYVE 125

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRK---SGDFDYRKITTKHIRSGVE--SRK 127
           +L           +L+  + +++  +  + +      G     ++    + + V+  + +
Sbjct: 126 YL-------HEARALSKATIVNYVPFIREFLEDCFGDGRIRLSRLRAGDVVNFVQCQALR 178

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR--KTEGIRPWTKEDMQQFK-- 183
                A    T++R   ++A  +  + ++   +V            R    E +QQ    
Sbjct: 179 LHLKRAKLMTTALRSFLRYACYRGDMTLDLAAAVPVVANWSMQSIPRGIPPEQIQQLLVS 238

Query: 184 --SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPD 239
                + G +       L   GLR  +     +  +     + S++  K+G    + LP 
Sbjct: 239 INRRTAVGRRDYAIILLLARLGLRSGEVAFLELDDIDWNTGVLSVR-GKSGQRNGLPLPA 297

Query: 240 GFMKLLAMTPIGKET------FFINNDK---QKMNATQFSIWFKAKATKAGVNK---SAH 287
              K +A               F+           A+      +    +AG++     AH
Sbjct: 298 DVGKAIAAYLRDGRPQSTSRRVFLRAKAPVIGFRGASGVGSIVRHSLQRAGIDAPTTGAH 357

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             R   A      GA+  E+    G       + YTK
Sbjct: 358 QFRHGLACQMLSHGASLSEIGELLGHHHPQTTKIYTK 394


>gi|116512825|ref|YP_811732.1| integrase [Lactococcus lactis subsp. cremoris SK11]
 gi|116108479|gb|ABJ73619.1| Integrase [Lactococcus lactis subsp. cremoris SK11]
          Length = 393

 Score = 83.9 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 44/327 (13%), Positives = 102/327 (31%), Gaps = 51/327 (15%)

Query: 48  MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKS 106
             A+         +   +        L + +  S    ++  N+     ++  + I+   
Sbjct: 48  HQAMNKFIKNGSTVAREKVSFDNFNALATSWFDSYK-LTVKANTIRINSNFLKNYILPAL 106

Query: 107 GDFDYRKITTKHIRSGVESRKHTPSSA-----IQ----------FLTSMRVLFKWAVRQE 151
           G++   KITT  +++ V       ++A      +           L  ++ +  + ++  
Sbjct: 107 GNYKVEKITTVLLQNIVNDWARNANTAEIVNGNREKGKSKDYKLLLNIIKRILDYGMQLG 166

Query: 152 YVAINPCLSVERPKRKT---EGIRPWTKEDMQQFKSFWS------EGSQPRLAFEFLLYS 202
            ++ NP + V  PK KT   + I+ +  +++++F  +           +    ++ LL +
Sbjct: 167 VISDNPAIKVFSPKLKTRTVKKIKYFNNDELKRFLDYLDSLQSTTANIKSTSLYKLLLAT 226

Query: 203 GLRCSDSCRAGVQHLQ----------------NNIFSIKTQKTGTII------TVELPDG 240
           GLR  ++       +                 N I      K    +      T+ +   
Sbjct: 227 GLRICEALALSWSDIDFVNNTVSVSKTLIQYSNEIQDSAKTKESNRLVSVDSETISMLKE 286

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQF--SIWFKAKATKAGVNKSAHGVRKFSATISA 298
           + K      I      + +  QKM   +       +        N   HG R   A++  
Sbjct: 287 WRKHQNYGAISLHDSLVFSYHQKMRTYELERQHLVRHFKKAKVPNIGFHGFRHTHASLLM 346

Query: 299 DAGATAHELMATYGWKTVDQAE-TYTK 324
           +      E+    G          Y+ 
Sbjct: 347 NNDVNPKEIQMRLGHADYSITMNLYSH 373


>gi|218130593|ref|ZP_03459397.1| hypothetical protein BACEGG_02182 [Bacteroides eggerthii DSM 20697]
 gi|217986937|gb|EEC53268.1| hypothetical protein BACEGG_02182 [Bacteroides eggerthii DSM 20697]
          Length = 409

 Score = 83.9 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 50/320 (15%), Positives = 104/320 (32%), Gaps = 37/320 (11%)

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKSAHWG---SLAVNSRISFESYFDQIIR------ 104
           +T  +E     +    TL  L   + +         ++  +  ++    +++        
Sbjct: 93  ATAVKEAFQGSKDTQMTLLKLFDRHIEEIRARVGIDVSHRTLPNYLYTRNRLADFVSSRF 152

Query: 105 KSGDFDYRKITTKHIRSGVE----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
           K  D  + ++  + IR   E     +     +   +L  ++ + + A ++ Y        
Sbjct: 153 KVSDLAFCQLNEQFIREFQEYVVIEKGLGVQTVRHYLAILKKICRIAFKEGYSDKYYFEH 212

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP-----RLAFEFLLYSGLRCSDSCRAGVQ 215
            + PK K    R  +KED ++ +     G +P     R  F F  Y+G    D     + 
Sbjct: 213 YKLPKLKETAPRALSKEDFEKIRDIELTGCRPEHSIVRDMFLFACYAGTSYVDVVAITLD 272

Query: 216 HLQNN-----IFSIKTQKTGTIITVELPDGFMKLLAMTPIG-KETFFINNDKQ--KMNAT 267
           +L  +         +  K G +  V+L    + L+       + T F     Q  K   T
Sbjct: 273 NLSRDDNGALWLKYRRGKNGQLSRVKLLPEAVALIEKYRDDTRPTLFPVIPYQALKWCLT 332

Query: 268 QFSIWFKAKATKAGVNK--SAHGVRKFSATIS-ADAGATAHELMATYGWKTVDQAETYTK 324
              +         G+    S H  R   +T+   + G     +    G   +   + Y +
Sbjct: 333 SIKMKV-------GIKGRLSYHMGRHSFSTLMTLENGVPIETVSKMLGHADIRTTQVYAR 385

Query: 325 GADRIRLGIKNSRRISSVVD 344
                +L     + I +  D
Sbjct: 386 -VTPKKLFEDMDKYIEATKD 404


>gi|312977304|ref|ZP_07789052.1| phage integrase [Lactobacillus crispatus CTV-05]
 gi|310895735|gb|EFQ44801.1| phage integrase [Lactobacillus crispatus CTV-05]
          Length = 385

 Score = 83.9 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 43/272 (15%), Positives = 92/272 (33%), Gaps = 35/272 (12%)

Query: 100 DQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL 159
           + I  + G+    +I    ++  V        S    +  +  + K+A+ + +   +P  
Sbjct: 107 NHIKPEFGNKYIDRIDITRLQKFVNWLSQKYISYQYKVNILHRIIKYAILRGWCNEDPFN 166

Query: 160 SVERPKRKTEG-IRP----WTKEDMQQFKSFWSEGSQPRLAFEFLLY-SGLRCSDSCRAG 213
            +  PK+ ++   RP    +  +++++F S   E +    AF  +L   GLR  ++    
Sbjct: 167 KIVIPKKSSKKSDRPKENYYNLDELKEFLSAAKEHNYSYYAFFVVLGNLGLRRGEALALK 226

Query: 214 VQHLQNNIFSIK---------------------TQKTGTIITVELPDGFMKLLAMTPI-- 250
            +++  +   +                      + K    ++  L     +      +  
Sbjct: 227 WKNIDFDKQIVHIDHTVSHDLQNKKVIGDPKTYSAKRDLALSKNLNYVLREYRKTQKVFN 286

Query: 251 -GKETFFINNDKQKMNATQFSIWFKAKAT--KAGVNKSAHGVRKFSATISADAGA--TAH 305
              +  F   +    N+   S W K+           +AHG R   AT+  +     T  
Sbjct: 287 RDDDYIFHTKNGSFFNSPAVSEWMKSIYHFYPELRKITAHGFRHSLATLLYEGSDKITPK 346

Query: 306 ELMATYGWKTVDQA-ETYTKGADRIRLGIKNS 336
           ++    G   V  A   YT      +  IKN+
Sbjct: 347 DVQYVLGHSRVTTALNIYTHVTQNQKSNIKNA 378


>gi|300691277|ref|YP_003752272.1| hypothethical protein, phage integrase domain [Ralstonia
           solanacearum PSI07]
 gi|299078337|emb|CBJ50988.1| hypothethical protein, phage integrase domain [Ralstonia
           solanacearum PSI07]
          Length = 339

 Score = 83.9 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 61/340 (17%), Positives = 109/340 (32%), Gaps = 27/340 (7%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
             R G  +   R+      R           A+  +L     +  ++   + + TTL  L
Sbjct: 5   TKRGGAWLCQVRRKGFP-HRAKAFSSHADAAAWGRSLEAEMDRGVHVPDRQAESTTLADL 63

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT--PSS 132
           +  Y         + NS  S       I R+ G +    +T K +    + +  T  P +
Sbjct: 64  LDRYLTEISPTKRSGNSDNSR---VAAITRRLGAYKLTALTPKLLAEYRDEKLRTLNPQT 120

Query: 133 AIQFLTSMRVLFKWA-VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
            I  L  +      A     +V       V +PK  +   R   + ++    +  +    
Sbjct: 121 VIHHLALINRALTLATREWGFVLPGGVPKVVKPKLPSGRDRRVQQGELDAIVAATASAVL 180

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVEL-PDGFMKLLAMT 248
             L   F + +G+R  +      +          I   KT T  TV L       L    
Sbjct: 181 ADL-IPFAVETGMRRGEILALDWEFIDFHRRTAYIPKTKTDTPRTVPLSTKALAILQKRQ 239

Query: 249 PIGKETFFINNDKQKMNATQFSIW-----FKAKATKAG--------VNKSAHGVRKFSAT 295
             G+   F   +     A   ++      ++A     G        V    H +R  + +
Sbjct: 240 EAGEGVPFAMQEDAVTTAFMRAVRRARAVYEAACAAEGKPPSGRWLVGIRLHDLRHEATS 299

Query: 296 ISADAGATAHELMATYGWKTVDQAETYT--KGADRI-RLG 332
              + G +  E+    G KT++  + YT  + AD   RLG
Sbjct: 300 RFFEKGLSVMEVTTITGHKTMEMLKRYTHLRAADVALRLG 339


>gi|224418352|ref|ZP_03656358.1| integrase-recombinase protein XERCD family [Helicobacter canadensis
           MIT 98-5491]
 gi|253827673|ref|ZP_04870558.1| integrase/recombinase XerD [Helicobacter canadensis MIT 98-5491]
 gi|313141883|ref|ZP_07804076.1| integrase-recombinase protein xercd family protein [Helicobacter
           canadensis MIT 98-5491]
 gi|253511079|gb|EES89738.1| integrase/recombinase XerD [Helicobacter canadensis MIT 98-5491]
 gi|313130914|gb|EFR48531.1| integrase-recombinase protein xercd family protein [Helicobacter
           canadensis MIT 98-5491]
          Length = 353

 Score = 83.9 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 34/190 (17%), Positives = 72/190 (37%), Gaps = 22/190 (11%)

Query: 163 RPKRKTEGIRPWTKEDMQQFKS--------FWSEGSQPRLAFEFLLYSGLRCSDSCRAGV 214
           R K   +      +E++Q+F              G++ RL  + ++Y+G+R  +S    +
Sbjct: 158 RGKSGQKLPSYMIEEEVQRFLKGIDTYPFKHQDLGARNRLLLKVIIYTGIRVGESLNLKI 217

Query: 215 QHL--QNNIFSIKTQKTGTIITV------ELPDGFMKLLAMTP--IGKETFFINNDKQKM 264
           + +    + + I+ +  G    V       + + F   +   P  +  +  F N+  +K+
Sbjct: 218 KDITLDGDFYVIQVRGKGNKPRVVMIKAKNISNDFSLWINSRPNEVENDLLFCNHKGKKL 277

Query: 265 NATQFSIWFKAKATKAGVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
                S   +      G+ K    AH +R   AT+          +    G  +V+ +  
Sbjct: 278 TQAYVSRIVEQVLLTNGIRKEKNGAHMLRHSFATLLYQKSQDLVLVQEALGHASVETSRI 337

Query: 322 YTKGADRIRL 331
           YT   D+ +L
Sbjct: 338 YTH-FDKQKL 346


>gi|171057466|ref|YP_001789815.1| integrase family protein [Leptothrix cholodnii SP-6]
 gi|170774911|gb|ACB33050.1| integrase family protein [Leptothrix cholodnii SP-6]
          Length = 425

 Score = 83.9 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 38/265 (14%), Positives = 91/265 (34%), Gaps = 23/265 (8%)

Query: 83  HWGSLAVNSRISFESYFDQI--IRKSGD-FDYRKITTKHIRSGVES---RKHTPSSAIQF 136
               LA+ +R    +    +   + +G       +  + +R  + +   R  + S A   
Sbjct: 143 DARGLAIGTRGDRLACISLLLQCKVAGKAIAIGALQPEDVRGFMATELTRVSSASHASAV 202

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKR--KTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
             ++R  F++             ++  P R  +    R  T E++Q+ ++  ++  +  L
Sbjct: 203 TAALRAYFRYRGTCGDAVNGLLGAISSPVRWSQASLPRALTAEEVQRLEAHCAQAKRAPL 262

Query: 195 AFE----FLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELP----DGFMKL 244
                    L  GLR  +  +  +          ++K  K+     + LP        + 
Sbjct: 263 RLLAMVRLALDLGLRVGEIAKLEITDFDWRAGTVTLKRTKSQRQDVLPLPAVTGQALSEY 322

Query: 245 LA--MTPIGKETFFINN---DKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISAD 299
           +          + F+       + +     S         AG+++S H +R   A    +
Sbjct: 323 MRHERPATTLPSLFVRRVAPHDRPIGVDTVSQAIGRALRGAGISRSCHSLRHTLACRLVN 382

Query: 300 AGATAHELMATYGWKTVDQAETYTK 324
           +G++  E+      +++D +  Y K
Sbjct: 383 SGSSIKEVADVLRHRSLDTSLIYAK 407


>gi|32469432|ref|NP_862840.1| gp1 [Streptococcus phage SM1]
 gi|32441584|gb|AAP81883.1| gp1 [Streptococcus phage SM1]
          Length = 375

 Score = 83.9 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 48/339 (14%), Positives = 119/339 (35%), Gaps = 48/339 (14%)

Query: 48  MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG 107
            +A+      ++ I++ + +  T + + + +  S    ++  +++ ++      + ++  
Sbjct: 42  QAAILLQEKIKKKISTKQVESITFEEIYNLFYNSWS-KTVKASTKHNYTFVDATMKKEIP 100

Query: 108 -DFDYRKITTKHIRSGVESRKHTP--SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP 164
            +     I  ++I+S +E+   +    +A +  + ++ +F +AV+  Y+  N       P
Sbjct: 101 SNTLLANIDRRYIQSKIENIIDSKGYHTAYRVRSRLKSIFDYAVQYSYIENNEVNYTVIP 160

Query: 165 KR-------KTEGIRPWTKEDMQQFKSFWSEGSQPRL---AFEFLLYSGLRCSDSCRAGV 214
           K+       + +  +  T ++++      +     +        L  +G+R  +     +
Sbjct: 161 KKPETLEDIEKKRNKFLTMQEIKALIDALNNKPYQQKYADMVTVLALTGMRYGELTALQL 220

Query: 215 QHLQ---------NNIFSIKTQKT-----GTIITVELPDGFMKLLAM-----------TP 249
           +++           N  SI   KT      +I T+ + D  +K +               
Sbjct: 221 KNIDFENNKIEITGNFDSINKIKTLPKTAKSIRTILVSDAVIKAIQRQVVRLTERYQPLK 280

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHEL 307
                F +      +    F    K    KAG+ K  S+H  R    +  A+AG     +
Sbjct: 281 DDDYIFCLEVWNSPITLPSFIQIIKKYGAKAGIEKNLSSHIFRHSHISYLAEAGLPIKSI 340

Query: 308 MATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVVDS 345
           M   G        E Y+              ++   +DS
Sbjct: 341 MDRVGHANAKMTLEIYSHTTQ------DMEDKLVKTLDS 373


>gi|260907656|ref|ZP_05915978.1| phage integrase family protein [Brevibacterium linens BL2]
          Length = 265

 Score = 83.9 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 53/176 (30%), Gaps = 13/176 (7%)

Query: 163 RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222
           R +   +     +  D  +  +      + R     +L+ GLR  +     V+ +     
Sbjct: 71  RLREPKKLPVALSTADATKLVTSLRT-WRDRAMAGLMLWCGLRSCEVLALHVKDVDIGGR 129

Query: 223 SIKTQKTG-TIITVELP-------DGFMKLLAMTPIGKETFFI---NNDKQKMNATQFSI 271
            I     G     V L        D ++          + F +    +  Q + A     
Sbjct: 130 WITVTGKGAKQRRVPLDADVASVIDVYLLAERPASDSDQLFLVAKGTHRGQGLTAAGLRT 189

Query: 272 WFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            F+      GV     H +R    T+ A+AG     + A  G   VD    Y   A
Sbjct: 190 IFRYHRDLTGVAGGHPHALRHTFGTVLAEAGVDLAVMQALLGHAHVDTTARYVHLA 245


>gi|326943493|gb|AEA19386.1| Phage integrase [Bacillus thuringiensis serovar chinensis CT-43]
          Length = 347

 Score = 83.9 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 39/277 (14%), Positives = 82/277 (29%), Gaps = 31/277 (11%)

Query: 85  GSLAVNSRISF----ESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSM 140
              +  ++  +      +   I    G           I     S+K+  ++  +  T +
Sbjct: 59  KKRSERTKQQYLHDLSHFLRYIKESIGTIQELSHNEMEIYFYELSKKYAATTLRKKKTIV 118

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEG--IRPWTKEDMQQFKSFWSEGSQ-PRLAFE 197
           +   K+      ++ N    +++   K E    R    E++ Q      + +     AF 
Sbjct: 119 QQFLKYVYDNNGLSDNFSSRLKKVSVKKEELVNRDLYPEEVNQILDELKKSNYFVYTAFF 178

Query: 198 FLLYSGLRCSDSCRAGVQHL------QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251
            L  +GLR  +   A    L         +  +  +   +       D    L  +  + 
Sbjct: 179 LLTTTGLRIEEIATAKWADLVFHSSLNAYLLRVVGKGNKSREVRIFEDTLDALCHVRSLR 238

Query: 252 KET----------FFINNDKQKMNATQFSIWFKAKATKAGVN--------KSAHGVRKFS 293
           K+T          F    D     A   S     K  +  ++         + H  R F 
Sbjct: 239 KQTTELDTSSTSAFLPKADGSNYRADYLSSLVAKKIEEINLDFLRYRQDRITPHTCRHFM 298

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
           A    + G    ++    G +++   E Y +   R +
Sbjct: 299 ANYLMEKGIELKKIRDYLGHESIMTTERYLRERTRRQ 335


>gi|317501367|ref|ZP_07959569.1| transposase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|325263258|ref|ZP_08129993.1| transposase [Clostridium sp. D5]
 gi|328948774|ref|YP_004366111.1| integrase family protein [Treponema succinifaciens DSM 2489]
 gi|316897231|gb|EFV19300.1| transposase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|324031651|gb|EGB92931.1| transposase [Clostridium sp. D5]
 gi|328449098|gb|AEB14814.1| integrase family protein [Treponema succinifaciens DSM 2489]
          Length = 397

 Score = 83.9 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 42/284 (14%), Positives = 83/284 (29%), Gaps = 46/284 (16%)

Query: 85  GSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVESRKHT---PSSAIQFLTSM 140
            ++   ++   +     +     G      +     +      K       +      S+
Sbjct: 96  ANVRHGTKQGRKQLMRILEEDSLGACSIESVKLSDAKEWALRMKDKGYSFKTINNHKRSL 155

Query: 141 RVLFKWAVRQEYVAINPC--LSVERPKRKTEGIRPWTKEDMQQFKSF---WSEGSQPRLA 195
           +  F  A++ + +  NP         +  TE   P +      F SF        +    
Sbjct: 156 KAAFYTAIQDDCIRKNPFDFQLNTVLEDNTEPKVPLSPTQEASFLSFVQSDKVYQKYYDE 215

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQ----------------NNIFSIKTQKTGTIIT-VELP 238
              LL +GLR S+ C      +                    + ++T KT + I  + + 
Sbjct: 216 IIILLGTGLRISELCGLTESDIDFEHKLINVDHQLLKVSGVGYHVETPKTKSGIRQIPMS 275

Query: 239 ----DGFMKLLAMTPIGKETF--------FINNDKQKMNATQFSIWFK------AKATKA 280
               + F ++L                  F+N +     A  F   F+       K+ + 
Sbjct: 276 TKVYEAFKRVLNDRGRADNFIVGGYSRFLFLNRNGLPKVAVNFETMFRGLVKKYNKSHEE 335

Query: 281 GVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
            + K  + H +R    T  A+AG     L    G   ++    Y
Sbjct: 336 ALPKVTTPHTLRHTFCTNLANAGMNPKALQYIMGHSNINMTLNY 379


>gi|307130676|ref|YP_003882692.1| Phage integrase [Dickeya dadantii 3937]
 gi|306528205|gb|ADM98135.1| Phage integrase [Dickeya dadantii 3937]
          Length = 416

 Score = 83.9 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 40/274 (14%), Positives = 92/274 (33%), Gaps = 20/274 (7%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH 128
           T   + +++ +      LA N+        +  +     +    ++T +H  + +E  + 
Sbjct: 106 TFAKVAADWYEVKKSQQLAANTIKDIWRSLEKYVFPFIANQPISQLTARHFITALEPIQA 165

Query: 129 TPS--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP---KRKTEGIRPWTKED--MQQ 181
           +    +  +    +  +  +AV    +  NP   + +      KT       +    + +
Sbjct: 166 SGKLETVKRVSQRINEVMDYAVNSGLIPANPAAKIRKAFQTPVKTHMPTIRPEALPGLMK 225

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIITVEL 237
             S  S   Q RL  E+ L +  R +++       +     +        K      + L
Sbjct: 226 TLSVASIELQTRLLIEWQLLTVSRPAEAAETRWSEIDLMQNTWTIPAGRMKMRREHVIPL 285

Query: 238 PDGFMKLLAMTPI---GKETFFINN--DKQKMNATQFSIWFKAKATKAGVNKSAHGVRKF 292
           P   + +L         +E  F +    KQ MN+   +   +    K  +   +HG+R  
Sbjct: 286 PPQALAILDAMKPISGHREYLFPSAKDPKQPMNSQTANAALRRMGYKGVL--VSHGLRAI 343

Query: 293 SATISADAGATAHELMATYGWKTVDQAET-YTKG 325
            +T + +AG     + A       ++    Y + 
Sbjct: 344 FSTAANEAGFPPDVIEAALAHVDTNEVRRAYNRS 377


>gi|218129569|ref|ZP_03458373.1| hypothetical protein BACEGG_01146 [Bacteroides eggerthii DSM 20697]
 gi|217988299|gb|EEC54622.1| hypothetical protein BACEGG_01146 [Bacteroides eggerthii DSM 20697]
          Length = 409

 Score = 83.9 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 79/235 (33%), Gaps = 18/235 (7%)

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           ++ + +   +   +L  ++ + + A ++ Y       +   PK+     R  ++ED ++ 
Sbjct: 175 MDVKGYAVDTVRHYLAILKKICRIAYKEGYAERCHFANFTLPKQSERTPRALSREDFEKI 234

Query: 183 KSFWSEGSQ-----PRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTI 232
           +       +      R  F F  Y+G   +D+      +L  +         + +K    
Sbjct: 235 RDVEIPACRTTHILVRDLFLFACYTGTAYADAVSVTRDNLYTDDDGNLWLKYRRKKNELQ 294

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVR 290
            +V+L    + L+               +            K+ A  AGV+ +   H  R
Sbjct: 295 ASVKLLPEALALIEKYHDDNRPTLFPMVRHP----NLRQHMKSLAVLAGVSSTLCYHQAR 350

Query: 291 KFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
              A++   +AG     +    G   +   + Y +     +L     + I +  D
Sbjct: 351 HSFASLITLEAGVPIETISRMLGHSDITTTQVYARVIP-KKLFEDMDKYIEATKD 404


>gi|149004029|ref|ZP_01828836.1| hypothetical protein CGSSp14BS69_06827 [Streptococcus pneumoniae
           SP14-BS69]
 gi|147758011|gb|EDK65018.1| hypothetical protein CGSSp14BS69_06827 [Streptococcus pneumoniae
           SP14-BS69]
          Length = 377

 Score = 83.9 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 44/272 (16%), Positives = 92/272 (33%), Gaps = 38/272 (13%)

Query: 90  NSRISFESYFDQIIRKSGDFDYRKI--TTKHIRSGVESRKH---TPSSAIQFLTSMRVLF 144
           N     ++YF ++    G   Y  I    +H+R  V        + ++  + +  ++ +F
Sbjct: 90  NYNKHIKNYFSKV-DNVGKLTYEDIYQFREHLRKKVAQNSDNLLSSNTINKIMILLKKIF 148

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-SEGSQPRLAFEFLLYSG 203
              +R+ Y + NP   +++   +   ++ WT ++ QQF + +  E    +L F  L ++G
Sbjct: 149 DIGLRKGYYSTNPVKLLKKLPIEKTKMQFWTVKEFQQFLTLFEPEEYNIKLLFTVLFFTG 208

Query: 204 LRCSDSCRAGVQHLQ---------------NNIFSIKTQKTGTII-TVELPDGFMKLLAM 247
           LR  ++     Q +                  I  I T KT      + L     + L  
Sbjct: 209 LRLGEALALTWQDIDFPSNTIHITKSVYVNKGISHINTTKTKAGTRRIVLNKKLSQELQD 268

Query: 248 TPIGKETFFINNDKQKMNATQFS------------IWFKAKATKAGVNK--SAHGVRKFS 293
               ++          +    F               +K    +    K    H  R   
Sbjct: 269 WQQQQKHLLEQFTSDNLTLQVFQSSPIIITKNAIEKQYKKILERDNTLKMIRIHDFRHSH 328

Query: 294 ATISADAGATAHELMATYGWKTVDQA-ETYTK 324
           A++  + G     +    G  ++    +TY+ 
Sbjct: 329 ASLLINQGEDYLVVKERLGHASITTTIDTYSH 360


>gi|21242918|ref|NP_642500.1| phage-related integrase [Xanthomonas axonopodis pv. citri str. 306]
 gi|21108416|gb|AAM37036.1| phage-related integrase [Xanthomonas axonopodis pv. citri str. 306]
          Length = 419

 Score = 83.9 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 49/335 (14%), Positives = 109/335 (32%), Gaps = 38/335 (11%)

Query: 22  IYYFRKGHGRRIRLPYPHESTFI----------PAYMSALTGSTPKREYINSPRK--KPT 69
            Y +R    R       +    +           A  S + G +P  E   + R+     
Sbjct: 38  RYDYRLNGRRETLTLGRYGPAGMSLAMARERLLDAKRSVVQGLSPALEKQRAKRRLTAAR 97

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKH 128
           T   ++  +   A    +A ++R   +   D+ I+    +   +++T   +R+     K 
Sbjct: 98  TFGEMMERWLADAR---MADSTRAMRKHIIDRDILPVFQNRKLKEVTPDDLRALCNKVKA 154

Query: 129 T--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT--EGIRPWTKEDMQ-QFK 183
              P++AI     ++ ++ +A+       NP   V+     T     R  +  +++  F 
Sbjct: 155 RGAPATAIHVRDIVKQVYAFAILHGERLANPADDVKAASIATFVPKDRALSPAEIRLAFH 214

Query: 184 SFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIITVEL 237
              +  S P  RLA   +L + +R S+   A    +     +        K      V L
Sbjct: 215 QLETIASYPTIRLALRLILLTMVRKSELVEATWNEVDFENATWTIPKVRMKGRKPHVVYL 274

Query: 238 PDGFMKLLAMTPI--GKETFFINNDKQK------MNATQFSIWFKAKATKAGVNKSA--- 286
               M +            F + +              + +    ++A +AG+       
Sbjct: 275 SRQAMDIFVALHTCAAGSRFVLPSRYDPDRCMSHATLNRVTQLIGSRAKEAGLPLDPFTV 334

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
           H +R+ ++T+  + G     +      +   +   
Sbjct: 335 HDLRRTASTLLNEVGFNGDWIEKCLAHEEGSRTSR 369


>gi|119714827|ref|YP_921792.1| phage integrase family protein [Nocardioides sp. JS614]
 gi|119535488|gb|ABL80105.1| phage integrase family protein [Nocardioides sp. JS614]
          Length = 361

 Score = 83.9 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 65/360 (18%), Positives = 118/360 (32%), Gaps = 45/360 (12%)

Query: 12  TKERTRHGKIIYYFRKGHGR---RIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
            K+R  +GK    +R   G+   R          ++    + L      R     PR   
Sbjct: 4   IKKRD-NGKWRARYRDEGGKEHARHFARKTDAQDWLDEETAGL-----VRGDWIDPRHGK 57

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128
            T     +++     W   A  +  + E     +    G+   RKI   H+ + V+S   
Sbjct: 58  ITFAQWFADWSARQVW---ADGTLEAAEQAAASV--TFGNIAMRKILRSHVEAWVKSMST 112

Query: 129 T--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW--TKEDMQQFKS 184
           T   S+       + + F+ AVR + +   P   V  PK     +     T E +   + 
Sbjct: 113 TLAASTTRMRYNYVHMAFRAAVRDKVIREAPSDGVALPKIPRAEVTMLIPTPEQVAAARV 172

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ--------------K 228
              + +          Y+GLR  ++    V  +        ++ Q              K
Sbjct: 173 SCPDSAFVGF-IAVCAYAGLRLGEAAGLQVGDVDFLRREIRVRRQVQGQTVATAKVVPPK 231

Query: 229 TGTIITVELPDGFMKLLAMTPIGKETF----FINNDKQKMNATQFSIWFKAKATKAGVNK 284
            G+  TV + D  +KLL+       T+    ++      +N       ++      G++ 
Sbjct: 232 AGSARTVYVDDSLVKLLSTHVRDYGTWGDEGWLFGMGTLLNRNSAGHLWRQTRQGVGLDA 291

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYT----KGADRIRLGIKNSRR 338
            + H +R F A+    AG     +    G  +      TY+    K  DR R    +  R
Sbjct: 292 FTLHDLRHFYASGLIAAGCDVVTVQHALGHSSPTITLNTYSHLWPKAEDRTRDAAASLWR 351


>gi|313158800|gb|EFR58184.1| site-specific recombinase, phage integrase family [Alistipes sp.
           HGB5]
          Length = 259

 Score = 83.9 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 77/235 (32%), Gaps = 25/235 (10%)

Query: 108 DFDYRKITTKHIRSGVESRKH----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163
           D    ++    I       K      P++   +L  ++ + K A    ++  NP    + 
Sbjct: 9   DMPLAELEQSFIEQYHVYLKSDLGLKPTTVSGYLKCLKYVVKIAFNNGWMPRNPFSLYQY 68

Query: 164 PKRKTEGIRPWTKEDMQQFKS---FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220
                E     T++++++  +    +      R  F F  ++G+  +D        ++ +
Sbjct: 69  TAPNPE-RSFLTEDELRRMMTTELRYKRQDYNRDMFLFSCFTGICYADMASLTYDRIEQD 127

Query: 221 -----IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM---NATQFSIW 272
                  S   QKT T   V+L    + +L           +  D +             
Sbjct: 128 AQGEWWISGNRQKTETRYVVKLLPYALFILNKYRG------LTGDGRVFAMSTLDSIDDS 181

Query: 273 FKAKATKAGVNK--SAHGVRKFSATIS-ADAGATAHELMATYGWKTVDQAETYTK 324
            K  A + G++K  S H  R   AT      G +   L    G K +   + Y K
Sbjct: 182 LKNIARECGIDKQLSFHLARHTYATTICLSNGVSLETLSKMLGHKNITTTQIYAK 236


>gi|313682803|ref|YP_004060541.1| integrase family protein [Sulfuricurvum kujiense DSM 16994]
 gi|313155663|gb|ADR34341.1| integrase family protein [Sulfuricurvum kujiense DSM 16994]
          Length = 364

 Score = 83.9 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 53/333 (15%), Positives = 109/333 (32%), Gaps = 24/333 (7%)

Query: 5   LRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYM--SALTGSTPKREYIN 62
           +R+   +  ++  H K  Y F      +  +      ++        A       +E + 
Sbjct: 10  VRIKSNLWADQD-HKKFYYRFMHDGKNKKGIFDFSNKSWDKRTRISKAEFELLQIKEKLT 68

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRS 121
                  T+  ++  Y  +        N +   +SY+D ++    G      +  K I+ 
Sbjct: 69  KGLDDSATIDDIVKLYLDTLP----EKNYKRDRKSYYDSKVKDVLGKKKAADVLPKDIQK 124

Query: 122 GVE---SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
            V    ++  +P +  Q +  +   F+ A+    +  NPC +V+    K++ +     E 
Sbjct: 125 LVNDLVAKGGSPRTVKQAIEVLSPSFEIAIANRLIIHNPCKAVKLQLPKSKKMVVNATER 184

Query: 179 MQQFK----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTI 232
           ++         ++     R  F   L  G R  +      +H+    + + +   K G  
Sbjct: 185 LKAIYQGIMKLYALDPYYRAFFLLALQ-GRRKGEVINLKWEHIAFDYDYYVLPDPKNGEE 243

Query: 233 ITVELPDGFMKLLAMTPIGKETFF---INNDKQKMNATQFSIWFKAKATKAGVNKSAHGV 289
             + LP      L      K   F   IN   +  + T+ +   K +    G   S H  
Sbjct: 244 QKIYLPPNVKAALLEFQEEKGWVFESPINPGNRLFDGTKQTARLKKEV---GDWFSLHYT 300

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETY 322
           R    +  A+ G  A  +    G    +    Y
Sbjct: 301 RNVMVSAMAEQGVDAIYMSGALGHSDPNTITKY 333


>gi|294787223|ref|ZP_06752476.1| putative phage integrase family protein [Parascardovia denticolens
           F0305]
 gi|315227229|ref|ZP_07869016.1| possible integrase [Parascardovia denticolens DSM 10105]
 gi|294484579|gb|EFG32214.1| putative phage integrase family protein [Parascardovia denticolens
           F0305]
 gi|315119679|gb|EFT82812.1| possible integrase [Parascardovia denticolens DSM 10105]
          Length = 280

 Score = 83.9 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 37/261 (14%), Positives = 89/261 (34%), Gaps = 14/261 (5%)

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
           R+ P     L+ ++ K          +  ++     ++     +    +I+ + I   ++
Sbjct: 7   RQPPQEWVPLLDQWVKYLRIRGCTPATIENWWYNVSRLALIL-NKPVYQISDEDIIDYMD 65

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
            R  + +       +    F + +       NP  ++ + KR    +RP +++ +++   
Sbjct: 66  -RGLSANGIRNNRNAFNSFFDYLITAGLREDNPLAALPKVKRDKHKMRPASRQQVEK--G 122

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITV-ELPDGF 241
                   RL    L   G+R S+  +   + L  ++   +I     G    +  L    
Sbjct: 123 LHDPDPTARLMVMMLADLGVRRSELAQIRKEDLIQEDKYTTIIIHGKGDKDRILPLSQRL 182

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAG 301
            ++L   P G    F       ++      + K          + H +R+  AT    A 
Sbjct: 183 QQILTAMPDG--YLFPGRFHGHVHPDTVYRYVKRAT-----GATPHAIRRRFATDLWHAT 235

Query: 302 ATAHELMATYGWKTVDQAETY 322
             A ++    G +++   + Y
Sbjct: 236 GDAVKVQGMLGHESLATTQAY 256


>gi|266620800|ref|ZP_06113735.1| site-specific recombinase, phage integrase family [Clostridium
           hathewayi DSM 13479]
 gi|288867585|gb|EFC99883.1| site-specific recombinase, phage integrase family [Clostridium
           hathewayi DSM 13479]
          Length = 285

 Score = 83.9 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 45/267 (16%), Positives = 89/267 (33%), Gaps = 26/267 (9%)

Query: 74  LISEYRKSAHWGSLAVNSRISFES----YFDQIIRKSGDFDYRKITTKHIRSGVESR--K 127
           L+ EYRK   +   + ++   +      Y   +  + G  +  +IT +           K
Sbjct: 10  LMEEYRKYLVYNEKSKSTINKYLRDAGKYLQFLKTREGAGN--EITKESTMDYKMELMEK 67

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI----RPWTKEDMQQFK 183
           + P+S   +LT++     +     Y   +    V   K +        R  TK +  +  
Sbjct: 68  YKPASVNSYLTAVNSFLTF-----YGKTD--CHVRLLKIQKRIFTDQSRELTKAEYIRLV 120

Query: 184 SFWSEGSQPRLAF--EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE--LPD 239
                  + RLA   E +  +G+R S+     V+ L +   S+  +    II +   L +
Sbjct: 121 ETARYDKKERLALIMETICGTGIRISELQNITVESLLSGYASVSCKGKERIILIPVKLKE 180

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATI 296
              +      I   + FI    + ++ +           KA ++      H +R   A  
Sbjct: 181 KLREYCFKHEIQSGSIFITRSGKPIDRSNVWTEMNKLCEKANISHGKVFPHNMRHLFART 240

Query: 297 SADAGATAHELMATYGWKTVDQAETYT 323
                     L    G  +++    YT
Sbjct: 241 YYGKQKDIVHLADILGHSSIETTRIYT 267


>gi|160883581|ref|ZP_02064584.1| hypothetical protein BACOVA_01553 [Bacteroides ovatus ATCC 8483]
 gi|156110994|gb|EDO12739.1| hypothetical protein BACOVA_01553 [Bacteroides ovatus ATCC 8483]
          Length = 443

 Score = 83.9 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 49/279 (17%), Positives = 86/279 (30%), Gaps = 39/279 (13%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRKITTK---HIRSGVESRKHTPSSAIQFLTSMRV 142
            +A   + +  S    I R   D    ++ +         + S   + ++   +L ++R 
Sbjct: 169 GMAAAYKSTRSSLAKFISR--PDVRMSEVDSAFVGRYGDFLYSNGASGNTVSYYLRNLRS 226

Query: 143 LFKWAVRQEY----------VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
           L+  AV   Y              P  +V+R           ++ DMQ       E    
Sbjct: 227 LYNQAVADGYHPRGEYPFAKAQTRPAKTVKR---------ALSRTDMQNLADLNLENEPE 277

Query: 193 R-LAFEFLLYS----GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
              A +  L+S    G+   D        + N + +    K+  +I + +      L+  
Sbjct: 278 LEFARDLYLFSFYAQGMAFVDIVLLRKADICNGVLAYSRHKSKQLIRIAVTPQMQGLMDK 337

Query: 248 TPIGKETFFIN-----NDKQKMNATQFSIW---FKAKATKAGVN--KSAHGVRKFSATIS 297
              G E  F           K             K  A  A +    + +  R   AT++
Sbjct: 338 YKTGNEYLFPIISGEYASGYKQYRLALGRINRHLKKIAVAADIKVPLTTYTARHTWATLA 397

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
            D GA    + A  G  + +    Y K  D   L   NS
Sbjct: 398 RDYGAPISVISAGLGHTSEEMTRVYLKDFDVSMLNQVNS 436


>gi|323175642|gb|EFZ61236.1| prophage lambda integrase [Escherichia coli 1180]
          Length = 339

 Score = 83.9 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 52/304 (17%), Positives = 100/304 (32%), Gaps = 33/304 (10%)

Query: 59  EYINSPRKKPTTLKWLISEYRKSAHWG----SLAVNSRISFESYFDQIIRKSGDFDYRKI 114
           E  ++ +++   LK  +  Y K          +A  +          ++ + G+   +++
Sbjct: 40  ESPSATKRRGIRLKAWVDRYLKIQDTRLKNGDIAATTHKEKTRMAAYLVSRLGNHPLKEL 99

Query: 115 TTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAI--NPCLSVERPKRKTEG 170
             +     ++    K   S+A         ++K A     V    NP  +  +P  K   
Sbjct: 100 EVRDFALILDEWLDKDMVSTARVNRGLWVDIYKEAQHAGEVPPGWNPPEATRKPIPKVTR 159

Query: 171 IRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
            R  T ED ++  +   E    R A    + +G R  D C      + N    I   KTG
Sbjct: 160 AR-LTMEDWKKIYNATPEKHFIRNAMLLAIVTGQRRDDICHMRFSDVWNEHLHITQGKTG 218

Query: 231 TIITVELPDG-------FMKLLA-MTPIGKETFFINNDK----QKMNATQFSIWFKAKAT 278
             + + L            +++          + I++      + M+    S +F     
Sbjct: 219 MRLALPLTLRCDAIGITLKEVIDGCRDRILSPYLIHSRHQKQPKPMSKDNLSDYFAKARD 278

Query: 279 KAGV-------NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY--TKGADRI 329
            AG+         + H  R  S  +    G     L    G K     + Y  T+G + +
Sbjct: 279 LAGIIPPAGKTPPTFHEQRSLSERLYRAQGIDTKTL---LGHKVQATTDRYNDTRGQEWV 335

Query: 330 RLGI 333
           +L I
Sbjct: 336 KLVI 339


>gi|269926673|ref|YP_003323296.1| integrase family protein [Thermobaculum terrenum ATCC BAA-798]
 gi|269790333|gb|ACZ42474.1| integrase family protein [Thermobaculum terrenum ATCC BAA-798]
          Length = 357

 Score = 83.9 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 48/287 (16%), Positives = 95/287 (33%), Gaps = 30/287 (10%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH 128
           TL+  ++E+ +      L V++R++++   +  I    G    + +    +   +     
Sbjct: 62  TLEQYLAEWLE-VRSRELRVSTRVNYQRLIEQHICPALGGRRLQALAALELSRWLAGLGE 120

Query: 129 T-PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
             P  A +    +      AVR   +A NP   VE PK +        ++ +    +   
Sbjct: 121 RLPRRAQEAYALLHKALADAVRLGLLATNPLDRVEPPKHQRRRPTLPARDQIALLIAALE 180

Query: 188 EGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-----------------TQK 228
            G          FLL SG R  ++       +     S++                   +
Sbjct: 181 AGKAGWYSELLLFLLGSGCRIGEALGLEWGDVDWQEGSVRISRQLLEVGGEVHESPPKSR 240

Query: 229 TGTIITVELPDGFMKLLAMTPIGKE--TFFINNDKQKMNATQFSIWFKAKATKAGVNK-S 285
            G  + + LP   ++ L      K     F+++               A   + G+ +  
Sbjct: 241 AGERV-IALPAFALEALRQQRAKKLGKYCFLSSTGTTPCRRNVLRALHAVCAELGLPRLR 299

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKT-VDQAETYTK---GADR 328
            H +R   A++ A AG       +  G  + +   + Y     GADR
Sbjct: 300 IHDLRHVHASLLAHAGVPPKVAQSRLGHSSPMVTLQVYQHVLDGADR 346


>gi|254225618|ref|ZP_04919226.1| site-specific recombinase IntI4 [Vibrio cholerae V51]
 gi|125621833|gb|EAZ50159.1| site-specific recombinase IntI4 [Vibrio cholerae V51]
          Length = 320

 Score = 83.9 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 41/294 (13%), Positives = 87/294 (29%), Gaps = 57/294 (19%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWA 147
           A  +  ++  +  + I          +  K +   +         A +  +       + 
Sbjct: 19  AKKTIEAYLHWITRYIHFHNKKHPSLMGDKEVEEFLTYLAVQGKVATKTQSLALNSLSFL 78

Query: 148 VRQEYVAINP-CLSVE--RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGL 204
            ++  +   P  L +   R + + +     T++++++         + +L  + L  SGL
Sbjct: 79  YKE--ILKTPLSLEIRFQRSQLERKLPVVLTRDEIRRLLEIVDP--KHQLPIKLLYGSGL 134

Query: 205 RCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLAMTPIGKETFFINN--- 259
           R  +  R  VQ +  +  +I+    K G   TV L       L       + ++  +   
Sbjct: 135 RLMECMRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHLKEQIALAKRYYDRDLHQ 194

Query: 260 -------------------------------------------DKQKMNATQFSIWFKAK 276
                                                       +  +N T      +  
Sbjct: 195 KNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVMRRHHINETVLQKAVRRS 254

Query: 277 ATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           A +A + K+   H +R   AT   + GA    +    G   V   + YT   DR
Sbjct: 255 AQEARIEKTVTCHTLRHSFATHLLEVGADIRTVQEQLGHSDVKTTQIYTHVLDR 308


>gi|331698984|ref|YP_004335223.1| integrase family protein [Pseudonocardia dioxanivorans CB1190]
 gi|326953673|gb|AEA27370.1| integrase family protein [Pseudonocardia dioxanivorans CB1190]
          Length = 408

 Score = 83.9 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 56/366 (15%), Positives = 106/366 (28%), Gaps = 57/366 (15%)

Query: 22  IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKS 81
           + Y       R R            Y+  +  S  + +Y+N       + K     + K 
Sbjct: 35  VRYVDPDGVERSRTFPDRCKAEAEGYLVEVEASKREGKYVNV-HAGKISFKAHAENWLKG 93

Query: 82  AHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQ---FL 137
               S    +R +  S  D +I+          IT   +R  +        S        
Sbjct: 94  ---QSPDRATREALRSRLDSRILPFFATRSVNAITATTVREWLGQLDDAHLSQNYRTVLF 150

Query: 138 TSMRVLFKWAVRQEYVAINPCL--SVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195
           T +  +   AV +  +  NPC   +++RP      +  W+++ +   +       + +LA
Sbjct: 151 TIVSSVLDAAVEERLIHRNPCKSQAIKRPSSPPSNVVVWSRKRVDTIEQR--IEGRFQLA 208

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ---------------KTGTIITVELPDG 240
                  GLR  +        +      ++ +               K G    V L  G
Sbjct: 209 VVVGAGCGLRQGEILGLSPDDVDRERMVLQVRRQLRIVDRTLVFALPKGGKTRVVPLSRG 268

Query: 241 FMKLL-------------------AMTPIGKETFFINNDKQKMNATQFSI-WFKAKATKA 280
            ++ +                   A  P          + +  +   F+   ++     A
Sbjct: 269 VLERITSHIEEHPPTPITLPWQDPAGEPTPVPMLMTGENGRLYSGDLFTKVIWQGAFRSA 328

Query: 281 GVNKS-----AHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGA----DRIR 330
           G+         H +R F A++    G +  EL A  G         TYT       +R R
Sbjct: 329 GIEYRKRADGMHALRHFYASVLLSQGVSIKELAAYLGHNDPGFTLRTYTHLVPSSFERAR 388

Query: 331 LGIKNS 336
             +   
Sbjct: 389 AAVDGV 394


>gi|299783186|gb|ADJ41184.1| Integrase XerD [Lactobacillus fermentum CECT 5716]
          Length = 292

 Score = 83.9 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 33/278 (11%), Positives = 87/278 (31%), Gaps = 24/278 (8%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGVES 125
             L +       W +    ++++  SY   +   +      G  +++++    +   ++S
Sbjct: 6   DALQASLVSYQEWLTKKGGAKLTIASYLTDLRDTAAYLTSRGVTNWQQVDRATLTXYLQS 65

Query: 126 RKHTPS---SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
                    +  + ++S+R  + +      V  +P   ++  +         T ++    
Sbjct: 66  LNDKGRRTTTIQRRISSLRRFYXYLQVTGQVNHDPVALLKAKQTPRLAPVGLTPQEADLL 125

Query: 183 KSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
                       + R     L+ +G R ++        L   +  +   ++   + V L 
Sbjct: 126 PDHVPGKGVARERNRALVALLVATGARANELRDLQTGDLDLELGVVYLGQSSRRL-VPLN 184

Query: 239 DGFMKLL--------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288
           +     L          +   +   F+NN  Q ++         A   +A +    +   
Sbjct: 185 EQAQTYLTTYLTARADQSATDEGYVFLNNRGQPLSRQSIWEIVNATGQRANIEGAVTPQR 244

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           VR   A      GA    +    G +++   + Y + A
Sbjct: 245 VRDGFAYRLLAHGADLSLVQQLMGHQSILTTQVYLEQA 282


>gi|290968678|ref|ZP_06560216.1| site-specific recombinase, phage integrase family [Megasphaera
           genomosp. type_1 str. 28L]
 gi|290781331|gb|EFD93921.1| site-specific recombinase, phage integrase family [Megasphaera
           genomosp. type_1 str. 28L]
          Length = 357

 Score = 83.9 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 41/269 (15%), Positives = 90/269 (33%), Gaps = 36/269 (13%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-KHTPSSAIQFLTSMRVLF 144
             A+N+ I++ +  +++     D   ++IT  H      +  +   ++    +T ++  F
Sbjct: 89  EYALNTIITYRNAINRL-PTLKDMPIKEITYAHCIKEFATLEQAKGNTVFSTVTVLKSFF 147

Query: 145 KWAVRQEYVAINPCLSV--ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL-- 200
           K A+  + +   P  +   +   +    +R +T+E+M     ++  G   +   +     
Sbjct: 148 KQAMLYKVIPSTPLANYSYKPGHKGVSRLRIFTEEEMNTLLDYYK-GKDLQTWIQLCFLR 206

Query: 201 YSGLRCSDSCRAGVQHLQN-------------NIFSIKTQKTGTI-ITVELPDGFMKLLA 246
           Y GLR  +        +Q                F+ +  KT     T+ +PD  +  + 
Sbjct: 207 YCGLRLGEMSAIRWCSIQGNMLTVDRQYSNISGKFAFRKLKTKNSYRTIPIPDTLLNAIQ 266

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-----SAHGVRKFSATISADAG 301
           +       F               +  +  A    + K     S H  R   AT     G
Sbjct: 267 VYKKRYPPFISTAR----------VVQRNIALNISIKKIYPCHSPHDFRHTYATNLLARG 316

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIR 330
                + +  G       +TY   ++ +R
Sbjct: 317 VNLRTVASLLGDTITTVEKTYIHYSEEMR 345


>gi|261416592|ref|YP_003250275.1| integrase family protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261373048|gb|ACX75793.1| integrase family protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302326868|gb|ADL26069.1| site-specific recombinase, phage integrase family [Fibrobacter
           succinogenes subsp. succinogenes S85]
          Length = 278

 Score = 83.9 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 41/263 (15%), Positives = 83/263 (31%), Gaps = 19/263 (7%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD---YRKITTKHIRSGVESRKHTPSSA 133
           +Y K      LA  +  ++     +I       +       T ++ +  +E+  +  ++ 
Sbjct: 9   DYLK-KDADELAPLTVRTYYWNLKKIALFEPGLECECVTSETVRNYKRYLETLHNKEATV 67

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR-KTEGIRPWTKED------MQQFKSFW 186
           ++ L+  R+          +  +P  +V+  +     G     +        M+   +  
Sbjct: 68  VKALSVFRIFCNKMKADGVIHGDPFENVKVGRAYSRRGFLTLRELKHLYLSYMESHVALT 127

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
                    F F  ++GLR  D        + +     +  KTG  + + +P     LL 
Sbjct: 128 RAEDDVMRVFLFSCFTGLRYGDLRTLDASEIFDWKIRKQMHKTGEAVYIPIPVQARLLLP 187

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHG--VRKFSATISADAGATA 304
                   F + ++      + F+   +  A K G  K  H    R   AT     G   
Sbjct: 188 NPLTSGRVFHVVDN------STFNRTLRKAAKKLGHYKHVHCHLARHTFATTCITIGIPL 241

Query: 305 HELMATYGWKTVDQAETYTKGAD 327
                  G + +D    Y K  D
Sbjct: 242 PATSKLLGHRNLDTTLIYAKYVD 264


>gi|227355496|ref|ZP_03839891.1| integrase/recombinase [Proteus mirabilis ATCC 29906]
 gi|227164292|gb|EEI49181.1| integrase/recombinase [Proteus mirabilis ATCC 29906]
          Length = 330

 Score = 83.9 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 46/330 (13%), Positives = 113/330 (34%), Gaps = 37/330 (11%)

Query: 39  HESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESY 98
            +    P     L    P  +   +      T   L   Y +S      +  SR +  S+
Sbjct: 6   DDQEITPETSLVLAEKQPLLDLNATFTSPTQTNPAL--AYLRSLG----SKRSRQTMGSF 59

Query: 99  FDQIIRKSG-----DFDYRKITTKHIRSGVESRKHT---PSSAIQFLTSMRVLFKWAVRQ 150
              + +  G        +  +   HI++ ++   +    P++   +L +++ +   A   
Sbjct: 60  LTIVAKMIGFSSIKHCQWGALRRHHIQAIIDMLSNADKAPATINTYLAALKGVALEAWAM 119

Query: 151 EYVAINPCLSVERPKRKTEGI----RPWTKEDMQQFKSFW-----SEGSQPRLAFEFLLY 201
           + +       + + K          R  T  +++           S+G +       LL 
Sbjct: 120 KLMDTESYQHIRQVKSVRGSRLPKGRALTGHEIRALFRCCEKDHSSKGLRDAAILSVLLG 179

Query: 202 SGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMK----LLAMTPIGKETF 255
            GLR S+      +H+  ++  F ++ +     I+    D + +    +  +        
Sbjct: 180 CGLRRSEIVALNYEHIQFRDQAFIVRGKGNKERISYMPEDTWERVQLWIDEIRGSQDGAL 239

Query: 256 FINNDK------QKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELM 308
           F    +      +++         + +  ++G++K + H +R+  A+   D G     + 
Sbjct: 240 FTRIRRFDDVTDERITDQAIYYILETRQQESGIDKFAPHDLRRTFASAMLDNGEDIVTVK 299

Query: 309 ATYGWKTVDQAETY-TKGADRIRLGIKNSR 337
              G  ++   + Y  +G DR+R   ++ R
Sbjct: 300 DAMGHASIMTTQRYDRRGDDRLRKAARHLR 329


>gi|167758604|ref|ZP_02430731.1| hypothetical protein CLOSCI_00944 [Clostridium scindens ATCC 35704]
 gi|167663800|gb|EDS07930.1| hypothetical protein CLOSCI_00944 [Clostridium scindens ATCC 35704]
          Length = 431

 Score = 83.9 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 46/278 (16%), Positives = 82/278 (29%), Gaps = 34/278 (12%)

Query: 74  LISEYRKSAHWGSLAVNSRISF----ESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH- 128
           LI  +     + +   N+R         Y      K G      ++   +R  +      
Sbjct: 133 LIDRFL---DYKNYGPNTRDDVVWVVRRYLFHF-EKLGHETLEHVSVDEVRKFILKTAAE 188

Query: 129 -TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR--PWTKEDMQQFKSF 185
              SS    L  ++    +       A + C  +   K   +       T E++++  + 
Sbjct: 189 VKTSSLHNILLYLKHFHIFLKETGIPAPD-CTGLFSYKVYRDMPIQGYVTDEELERILAV 247

Query: 186 WS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPD 239
                  G + R        +GLR  D  R  +  +        +  +KTG  + V L +
Sbjct: 248 IDTESDMGKRDRAIILMAATTGLRACDLIRLKLSDIDWRKGEIRLCQKKTGRTVYVPLVN 307

Query: 240 GFMKLLA-----MTPIGK-ETFFINNDKQK---MNATQFSIWFKAKATKAGV------NK 284
                L        P+      F+     K    NA      F+    KAG+       K
Sbjct: 308 QVGSALQDYILNARPVSDCPEVFLRAVAPKTAIANAVCIGSMFQQYQKKAGIARHAFDGK 367

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
             HG+R+  A      G +   +    G   +     Y
Sbjct: 368 GFHGLRRRLAKKLLVTGTSLTTIAQILGHDDLKSLRQY 405


>gi|148252808|ref|YP_001237393.1| putative phage related integrase [Bradyrhizobium sp. BTAi1]
 gi|146404981|gb|ABQ33487.1| putative phage related integrase [Bradyrhizobium sp. BTAi1]
          Length = 434

 Score = 83.9 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 54/355 (15%), Positives = 101/355 (28%), Gaps = 52/355 (14%)

Query: 19  GKIIYY--FRKG-HGRRI--RLPYPHESTFIPAYMS----ALTGSTPKREYINSPRKKPT 69
           G + ++  +R G  GRR+  R  Y     F P         L  +          R    
Sbjct: 38  GSLSWFIEYRPGAGGRRVAKRRYYFGSREFTPEQARQTAKELLANVALGGDPMKDRLHER 97

Query: 70  ---TLKWLISEYRKSAHWGSLAVNSRISFE-SYFDQIIRKSGDFDYRKITTKHIRSGVES 125
              T       Y        L   +  ++  +       + G     KI+   +      
Sbjct: 98  QSLTFSEFAERYLSEEAEPKLKPGTVANYRIAVRRHANPEIGKLKLHKISNADLARLHTK 157

Query: 126 RKHTPS-SAIQFLTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPWTKEDMQQF 182
              T + +A + L  +  +F++AV  + V    NP   +   +      R    +++ + 
Sbjct: 158 IGKTSTVNANRTLECVSSIFRYAVTCDIVPVGHNPTKGIRAFRENRRE-RFLNSDELARL 216

Query: 183 ----------------------KSFWSEGSQPR--------LAFEFLLYSGLRCSDSCRA 212
                                      +    R         A   L+ +G R  +    
Sbjct: 217 GSAIREAETVGIPYEIDETKPTSKHAPKPENRRTKIDSYTAAALRLLILTGARLREILHL 276

Query: 213 GVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFF-INNDKQKMNATQF 269
              ++     +  +   KTG    V        L ++   G+   F    DK + +  + 
Sbjct: 277 KWDYVDFERGLLLLPDSKTGRKAIVLNVPALAVLSSLDRKGQYVIFSEQEDKPRADLNRP 336

Query: 270 SIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
                A+A   GV    H +R   A++ A AG     +    G       + Y  
Sbjct: 337 WRTISARAKLQGV--RLHDLRHTHASVGAGAGLGLPIIGKLLGHTQASTTQRYAH 389


>gi|320189893|gb|EFW64545.1| Phage integrase [Escherichia coli O157:H7 str. EC1212]
          Length = 392

 Score = 83.5 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 41/278 (14%), Positives = 90/278 (32%), Gaps = 49/278 (17%)

Query: 89  VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAV 148
            ++ IS+  Y D +  ++       +   + RS    +  T  +   ++  +  L ++A 
Sbjct: 100 ESTPISYIRYSDILNYRNELLHGETLYLDNPRS--NKKGRTVRTVDNYIALLCSLLRFAY 157

Query: 149 RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD 208
           +  +++  P   V++ +R      P +K +         +G    L  +F +YSGLR  +
Sbjct: 158 QSGFISTKPFEGVKKLQRNRIKPDPLSKTEFNALMES-EKGQSQNLW-KFAVYSGLRHGE 215

Query: 209 SCRAGVQHLQNNIFSIKTQKTGTIITVELPDG----------FMKLLAMTPIG------- 251
                 + +     ++  ++  TI+ +  P                L    +        
Sbjct: 216 LAALAWEDVDFEKGTVNVRRNLTILDMFGPPKTNAGIRTVTLLQPALEALKVQYKLTGHH 275

Query: 252 ---KETFFINNDKQK---------------------MNATQFSIWFKAKATKAGVNKS-- 285
              + TF+     +                       + +     + A   +AG+ +   
Sbjct: 276 RKSEITFYHREYGRTEKQKLHFVFMPRVCNGKQKPYYSVSSLGARWNAAVKRAGIRRRNP 335

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETY 322
            H  R   A     AGA    + +  G +T     E Y
Sbjct: 336 YHT-RHTFACWLLTAGANPAFIASQMGHETAQMVYEIY 372


>gi|319950767|ref|ZP_08024657.1| phage integrase family protein [Dietzia cinnamea P4]
 gi|319435568|gb|EFV90798.1| phage integrase family protein [Dietzia cinnamea P4]
          Length = 655

 Score = 83.5 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 32/189 (16%), Positives = 59/189 (31%), Gaps = 23/189 (12%)

Query: 162 ERPKRKTEGIRPWTKED---MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218
           + PK      R    +    +QQ  +         LA       GLR  +     +  + 
Sbjct: 331 DIPKLPQVLPRYLPIDADRRLQQALTTHPANELAALALRLQRACGLRIGELLDLELDCVH 390

Query: 219 -----NNIFSIKTQKTGTIITVELPDGFMKLLAMTP--------------IGKETFFINN 259
                 +   +   K  T   V L D  ++L+                    +  F    
Sbjct: 391 EIDGNGSWLKVPLGKMATERMVPLDDQTLELIDRVIQIRSHCQPLPHPRYRRRAQFLFTY 450

Query: 260 DKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
             +++            A  AG++  ++H +R   AT   +AG +   LMA  G  + + 
Sbjct: 451 LGRRLTQQGVRAELNHAADIAGLDHITSHQLRHTYATALVNAGVSLQALMALLGHVSAEM 510

Query: 319 AETYTKGAD 327
           +  Y +  D
Sbjct: 511 SLRYGRLFD 519


>gi|296444671|ref|ZP_06886635.1| integrase family protein [Methylosinus trichosporium OB3b]
 gi|296257939|gb|EFH05002.1| integrase family protein [Methylosinus trichosporium OB3b]
          Length = 429

 Score = 83.5 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 46/296 (15%), Positives = 90/296 (30%), Gaps = 42/296 (14%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           ++   + +Y         +        +   +I    GD D  K+TTK IR    +    
Sbjct: 106 SVGNALDDYFADRERRG-SKGLAKDKAAGNLRIRPDLGDVDLSKLTTKKIRDWHSALASA 164

Query: 130 PS-----------------------------SAIQFLTSMRVLFKWAVRQEYVAINPC-L 159
           P                              +A + LT ++    +A  +   A +    
Sbjct: 165 PRLARAGRSAEPRKETAIDTGDHDEVRARRATANRTLTVLKAALNFAFHEGRAATDDAWR 224

Query: 160 SVERPK-RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL- 217
            V+  K      +R  + ++ ++  +  +   +  +    L  +G R  +  R  V    
Sbjct: 225 KVKPFKEVDAAVVRFLSDDECRRVVNACAGEFRHIVRGALL--TGCRYGELTRMIVADYT 282

Query: 218 -QNNIFSIKTQKTGTIITVELPDG---FMKLLAMTPIGKETFFINNDKQKMNATQFSIWF 273
            ++ + +++  K G    V L D        L     G    F  +D      +      
Sbjct: 283 PESGMIAVRLSKAGKPRHVALNDEGRALFDELTSGKPGDGLIFTRDDGGAWGDSHQQRPL 342

Query: 274 KAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGA 326
           +A   +A +    + H +R   A+  A  G     + A  G       E  Y   A
Sbjct: 343 EAACARANIEPAATFHVLRHTYASALAMRGVPMGVIAAQLGHADTRITEKHYAHLA 398


>gi|186474498|ref|YP_001863469.1| integrase family protein [Burkholderia phymatum STM815]
 gi|184198457|gb|ACC76419.1| integrase family protein [Burkholderia phymatum STM815]
          Length = 418

 Score = 83.5 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 50/290 (17%), Positives = 97/290 (33%), Gaps = 32/290 (11%)

Query: 74  LISEYRKSAHWGSLAVNSRISFE-SYFDQIIRKSGD--FDYRKITTKHIRSGVESRKH-- 128
           L+  Y   A    LA ++R +      + ++   G+   D R++  + + + V  R    
Sbjct: 127 LLDAYL--AETRGLAASTRRNHRDRIGEFLVNHFGNRSIDMRRVKPRDVLNFVVERSKGL 184

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK----TEGIRPWTKEDMQQFK- 183
           +P SA     S+R   ++  RQ        L    PK          R  TKE + QF  
Sbjct: 185 SPRSAGALAGSLRTYLRY--RQSVGDHTESLIAAIPKVAVWSMARIPRLLTKEQISQFLH 242

Query: 184 ---SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELP 238
              +    G +       L+  GLR  +     +  +        I+  K   +  + LP
Sbjct: 243 AFDTRTPSGQRGYAMARLLVDLGLRAGEVAALQLSDIDWREGTLRIQAAKCKRVDFLPLP 302

Query: 239 DGFMKLLA------MTPIGKETFFINNDK---QKMNATQFSIWFKAKATKAGVNKS---A 286
               + LA               F+ +     + + +       +    + G   +    
Sbjct: 303 VQTGRALANYVHDGRGRTPSRALFVRHRAPFDRPVTSAVVGCSVRQAYARCGWPATSMGP 362

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
           H +R   A+     GA+  ++      ++++    Y+K  D  RL    +
Sbjct: 363 HLLRHSLASRMLSNGASLKDIADVLRHRSLNTTMIYSK-IDFNRLIAIAA 411


>gi|289626137|ref|ZP_06459091.1| integrase family protein [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|330869561|gb|EGH04270.1| integrase family protein [Pseudomonas syringae pv. aesculi str.
           0893_23]
          Length = 418

 Score = 83.5 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 49/307 (15%), Positives = 103/307 (33%), Gaps = 34/307 (11%)

Query: 50  ALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGD 108
           AL     KR    +      T KWL            +A +++   +S  D+ I+    +
Sbjct: 83  ALEKQREKRRLTAAKTFGEMTGKWLAGA--------RMADSTKAMRKSIVDRDILPAFEN 134

Query: 109 FDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
               +IT+  +R+     K    P++A+     ++ ++ +A+       NP   V     
Sbjct: 135 RQLNEITSDDLRALCNKVKERGAPATAVHIRDIVKQVYAFAILHGEKVENPAADVGAASI 194

Query: 167 KT--EGIRPWTKEDMQQF-KSFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221
            T     R  +  +++   +   S  + P  RLA   +L + +R S+  +A    +    
Sbjct: 195 ATFVPKDRALSPLEIRLMARQMESVATYPTIRLALRMILLTLVRKSELIQATWDEVDFEN 254

Query: 222 FSIK----TQKTGTIITVELPDGFMKL---LAMTPIGKETFFINNDK-----QKMNATQF 269
            +        K      V L    + +   L     G +    +              + 
Sbjct: 255 ATWTIPKQRMKGRNPNVVYLSRQALDIFVALHTCAAGSKFVLPSRYDADRCMSNATLNRV 314

Query: 270 SIWFKAKATKAGVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKG 325
           +     +A  AG+     + H +R+  +T+  + G     +      +    +   Y K 
Sbjct: 315 TQIVAERAKAAGLPLEPFTVHDLRRTGSTLLNEIGFNRDWIEKCLAHEDGRSSRSIYNKA 374

Query: 326 --ADRIR 330
             A++ R
Sbjct: 375 EYAEQRR 381


>gi|326201197|ref|ZP_08191069.1| integrase family protein [Clostridium papyrosolvens DSM 2782]
 gi|325988765|gb|EGD49589.1| integrase family protein [Clostridium papyrosolvens DSM 2782]
          Length = 235

 Score = 83.5 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 38/177 (21%), Positives = 66/177 (37%), Gaps = 11/177 (6%)

Query: 159 LSVERPKRKTEGIRPWTKEDMQQFKSFW--SEGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216
           L VE      +     T+++++++ +    S   Q  L  + LLY+G+R S+     + +
Sbjct: 40  LEVEIQADSKKLPYVPTEDELKRYYNEVWNSSNFQDMLIIKTLLYTGVRVSELINIKLDN 99

Query: 217 LQ--NNIFSIKTQKTGTIITVELPDGFMKLLAM-----TPIGKETFFINNDKQKMNATQF 269
           +   +    I   K      V  P  F +LLAM             F ++ K+K      
Sbjct: 100 VDFQDCQIRINNGKGNKDRIVPFPHSFKELLAMHHNNMKKNNASYLFESSWKKKYTDRGI 159

Query: 270 SIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
                  + KA + KS   H +R F  T     G     +    G ++    E Y+K
Sbjct: 160 RKIMAKYSEKANLQKSLSPHKLRHFLFTWLKKQGIDDSLIQPYSGHESRQTLEVYSK 216


>gi|253755605|ref|YP_003028745.1| tyrosine family site-specific integrase [Streptococcus suis BM407]
 gi|251818069|emb|CAZ55861.1| tyrosine family site-specific integrase [Streptococcus suis BM407]
          Length = 399

 Score = 83.5 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 44/279 (15%), Positives = 85/279 (30%), Gaps = 33/279 (11%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQ 135
           Y K+      +V  + +   +    I+  G    + IT +   +        ++ + A  
Sbjct: 87  YLKAYKQKVQSVTYKTALPHH-KLFIQYFGSKPLKAITPRDCEAFRLHIIENYSENYAKN 145

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL- 194
             +  +    +A R  Y++  PC +++ P+ K      WT  + Q F   +       L 
Sbjct: 146 LWSRFKACMGYAERLGYISDMPCKALDNPRGKHPKTPFWTYAEFQTFIKSFDLHDYEELQ 205

Query: 195 ---AFEFLLYSGLRCSDSCRAGVQHLQ-----------------NNIFSIKTQKTGT-II 233
              A      +G+R S+      + +                   N +     KT     
Sbjct: 206 RFTAIWLYYMTGVRVSEGLSLCWEDIDFDKKFLKVHTTLEKDENGNWYRKDQTKTPAGER 265

Query: 234 TVELPDG----FMKLLAMTPIGKET-FFINNDKQKMNATQFSIWFKAKATKAGVNK-SAH 287
            +EL D                ++T F I+        +      K KA + GV   +  
Sbjct: 266 LIELDDITIEVLQVWRKNQFANQDTDFIISRFGDPFCKSTICRIIKRKAQQVGVPVITGK 325

Query: 288 GVRKFSATISADAG-ATAHELMATYGWKTVDQA-ETYTK 324
           G+R   A+   +        +    G         TY+ 
Sbjct: 326 GLRHSHASYLINVLKKDILYVARRMGHADKSTTLNTYSH 364


>gi|289806997|ref|ZP_06537626.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 232

 Score = 83.5 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 30/214 (14%), Positives = 70/214 (32%), Gaps = 20/214 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESR---KHTPSSAIQFLTS 139
            +LA N+  ++      ++                 +++ +  R    +  +S+ + L++
Sbjct: 19  RNLAENTLSAYRRDLSMVVAWLHHRGKTLATAQADDLQTLLAERVEGGYKATSSARLLSA 78

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195
           MR  F+   R++Y   +P   +  PK      +  ++  +++             + +  
Sbjct: 79  MRRFFQHLYREKYREDDPSAQLASPKLPQRLPKDLSEAQVERLLQAPLIDQPLELRDKAM 138

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKET 254
            E L  +GLR S+     +  +      ++   K      V L +  +  L         
Sbjct: 139 LEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRP 198

Query: 255 FFIN----------NDKQKMNATQFSIWFKAKAT 278
           + +N             Q+M    F    K  A 
Sbjct: 199 WLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAV 232


>gi|13474970|ref|NP_106607.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
 gi|13474971|ref|NP_106531.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
 gi|14025717|dbj|BAB52317.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
 gi|14025794|dbj|BAB52393.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
          Length = 407

 Score = 83.5 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 39/264 (14%), Positives = 82/264 (31%), Gaps = 24/264 (9%)

Query: 85  GSLAVNSRISFESYFDQIIR-----KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
             L+ ++  ++       +      K   FD+ ++   H      ++  +   A   +T+
Sbjct: 126 RGLSASTLTNYLPIIRGFLDEQFGGKDPGFDHLRVGDVHRFIVRRAQAGSLGRAKLAVTA 185

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPK--RKTEGIRPWTKEDMQQFKSFW----SEGSQPR 193
           +R   ++  ++  +A +  ++V      R     +    E +++  +        G +  
Sbjct: 186 LRSFLRFLQQRGLLATDLAVAVPGIAGWRLAHLPKALRAEQVERLLASCDRRTPAGRRDY 245

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII-TVELPDGFMKLL------A 246
                L   GLR  +     +  L  +   I     G  +  + LP      L       
Sbjct: 246 AVLMLLARLGLRGGEVSALTLDDLDWDCGEIVVHGKGQRLARLPLPADVGAALVDYLRQD 305

Query: 247 MTPIGKETFFINNDKQKMNATQFSIW---FKAKATKAGVN---KSAHGVRKFSATISADA 300
                    FI     +      S      +    +AG+    K AH +R   AT     
Sbjct: 306 RPACSTRRVFIRTRAPRRGFVSQSTICCIVRRALKRAGLTPAFKGAHLLRHSLATDLLRR 365

Query: 301 GATAHELMATYGWKTVDQAETYTK 324
           GA+  E+         +  + Y K
Sbjct: 366 GASLVEIGQLLRHSQPNTTQIYAK 389


>gi|223932162|ref|ZP_03624166.1| integrase family protein [Streptococcus suis 89/1591]
 gi|223899143|gb|EEF65500.1| integrase family protein [Streptococcus suis 89/1591]
          Length = 399

 Score = 83.5 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 44/288 (15%), Positives = 90/288 (31%), Gaps = 34/288 (11%)

Query: 70  TLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--R 126
           T +  +++ Y ++      +V  + +   +    I+  G    R +T +   +       
Sbjct: 78  TFENYMNKIYLRAYKQKVQSVTYKTALPHH-KLFIQYFGSKPLRALTPRDCEAFRLHIIE 136

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            ++ + A    +  +    +A R  Y++  PC +++ P+ K      WT  + Q F   +
Sbjct: 137 NYSENYAKNLWSRFKACMGYAERLGYISDMPCKALDNPRGKHPETPFWTYAEFQTFVKSF 196

Query: 187 SEGSQPRL----AFEFLLYSGLRCSDSCRAGVQHLQ-----------------NNIFSIK 225
                  L    A      +G+R S+      + +                   N +   
Sbjct: 197 DLHDYEELQRFTAIWLYYMTGVRVSEGLSLCWEDIDFENKFLKVHTTLEKDENGNWYRKD 256

Query: 226 TQKTGT-IITVELPDG----FMKLLAMTPIGKET-FFINNDKQKMNATQFSIWFKAKATK 279
             KT      +EL D                ++T F I+        +      K KA +
Sbjct: 257 QTKTPAGERLIELDDITIEVLQVWRKNQFANQDTDFIISRFGDPFCKSTICRIIKRKAQQ 316

Query: 280 AGVNK-SAHGVRKFSATISADAG-ATAHELMATYGWKTVDQA-ETYTK 324
            GV   +  G+R   A+   +        +    G         TY+ 
Sbjct: 317 VGVPVITGKGLRHSHASYLINVLKKDILYVARRMGHADKSTTLNTYSH 364


>gi|120553909|ref|YP_958260.1| integron integrase [Marinobacter aquaeolei VT8]
 gi|120323758|gb|ABM18073.1| integron integrase [Marinobacter aquaeolei VT8]
          Length = 329

 Score = 83.5 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 46/307 (14%), Positives = 94/307 (30%), Gaps = 59/307 (19%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSS 132
           +   R       LA  +  ++  +  + IR  G      + T  + + +     +   S 
Sbjct: 15  LDRLRNFIRLRGLAYKTEKTYVFWIKRFIRFHGRKHPESMGTAEVEAFLSHLVLQANVSV 74

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVER--PKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           A Q +    ++F +   +E++   P  ++E    K+       ++ ++ ++         
Sbjct: 75  ATQRVALNALIFLY---REFLGT-PLENLEYEAAKKPKRLPVVFSPDEARRVIDNLEGEF 130

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPD--------- 239
           +  L    +  +GLR +++ R  V+ +        ++  K        LPD         
Sbjct: 131 K--LVAMLIYGAGLRINEALRLRVKDVDFGMQQLIVREGKGSKDRVTLLPDRLIQPLQDQ 188

Query: 240 ---GFMKLLAMTPIGKETFFI---------------------------------NNDKQK 263
                M+  A    G  + ++                                    +  
Sbjct: 189 IHAALMQHQADLAKGCGSVYMPAGLSKKYPNASQEPDWQYVFPALDLSIDPRSGIRRRHH 248

Query: 264 MNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
           M        FK    KAG++K A  H  R   AT   ++G     +    G   V   E 
Sbjct: 249 MMDRTVQKHFKHAIRKAGIHKPAGSHTFRHSFATRLLESGYDLRTIQKLLGHSDVRTTEI 308

Query: 322 YTKGADR 328
           YT    +
Sbjct: 309 YTHVVRK 315


>gi|296273220|ref|YP_003655851.1| integrase family protein [Arcobacter nitrofigilis DSM 7299]
 gi|296097394|gb|ADG93344.1| integrase family protein [Arcobacter nitrofigilis DSM 7299]
          Length = 383

 Score = 83.5 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 46/271 (16%), Positives = 93/271 (34%), Gaps = 34/271 (12%)

Query: 83  HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLTS 139
            W +  + ++ S       I+   G  +   +   HI+  +   + +K       + L S
Sbjct: 97  KWSTQELKTKKSRFK--RWILPHFGKMNIHDVRYSHIQKFINDIDDKKLLARKTQENLKS 154

Query: 140 -MRVLFKWAVRQEYVAI-NPCLSVERPKRKTEGIRPWTKEDMQQFK------SFWS---- 187
            ++  FK+ +++ Y+   NP   V+            T E + +F          S    
Sbjct: 155 SIQSFFKFCIKEGYLNTGNPAQYVDIKAYDNHVPMTLTLEQIIRFYQTIIDIDCHSSPNQ 214

Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----NNIFSIKTQKTGT----IITV 235
               +  + RL    ++  G R +++       +       I      KT       +T 
Sbjct: 215 SANLDNRKKRLMLILMI-HGRRWNEAQNLCWSEIDFISNLYIIPAHKSKTKKTQKHKMTD 273

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFS 293
            L    M+L  ++  G++  FIN   +K   +  + +FK    KA + K+      R   
Sbjct: 274 FLRLELMELKVISKEGEDFLFINPQTKK-PYSSINTFFKTIKKKADIPKTFRCQDFRHVV 332

Query: 294 ATISADA-GATAHELMATYGWKTVDQAETYT 323
            T++    G     +       +V   E Y+
Sbjct: 333 GTVAYQNLGIPLENIRDVLAHGSVTTTEIYS 363


>gi|260886001|ref|ZP_05736317.2| integrase/recombinase [Prevotella tannerae ATCC 51259]
 gi|260850862|gb|EEX70731.1| integrase/recombinase [Prevotella tannerae ATCC 51259]
          Length = 298

 Score = 83.5 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 45/259 (17%), Positives = 84/259 (32%), Gaps = 26/259 (10%)

Query: 89  VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAV 148
             + +         I         K +       V S   T  +AI    S+R+  ++  
Sbjct: 11  ETTVLKHRRNLSYFIAFLETRSKSKFSDIG-EDDVVSFLSTSRNAIDRYFSLRLFLRFLS 69

Query: 149 RQEYVAINPCLSV----ERPKRKTEGIRPWTKEDMQQFK----SFWSEGSQPRLAFEFLL 200
            QEY+  +    V      PKR+ +    +  E++QQ +         G +         
Sbjct: 70  VQEYIQTD-FEYVLSRNRYPKRE-KLPSIYGAEEIQQIELSVEQSGPVGKRDYAILLLAT 127

Query: 201 YSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLL------AMTPIGK 252
             GLR SD CR   +HL   +NI +    KT   I + L     + +      +      
Sbjct: 128 RLGLRASDICRLKFEHLDWDHNIIAFTQYKTRKAIELPLLTEVGEAIVNYLRYSRPISRH 187

Query: 253 ETFFINND--KQKMNATQFSIWFKAKATKAGVNKS-----AHGVRKFSATISADAGATAH 305
              F++     + M     +        ++G++ S      H +R   A+     G +  
Sbjct: 188 PEIFLSARPPYRPMFRWGINNAISRIMRESGIDISGRKFGPHAMRHSLASRLLANGVSLP 247

Query: 306 ELMATYGWKTVDQAETYTK 324
            +  + G  +      Y +
Sbjct: 248 VISESLGHDSSLSTMEYLR 266


>gi|118579795|ref|YP_901045.1| phage integrase family protein [Pelobacter propionicus DSM 2379]
 gi|118502505|gb|ABK98987.1| phage integrase family protein [Pelobacter propionicus DSM 2379]
          Length = 453

 Score = 83.5 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 45/332 (13%), Positives = 98/332 (29%), Gaps = 55/332 (16%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           T+K LI+ Y +     +   + +         ++   GD   + +  + +   ++  +  
Sbjct: 112 TVKQLITRYIERYAMKN-KKSWQEDKRILEKDVLPLWGDRKAKDVIRRDVIQLLDGMQGR 170

Query: 130 PSSAI-QFLTSMRVLFKWAVRQEYVAINPCLSVER---PKRKTEGIRPWTKEDMQQF--- 182
               I      +R +F++ V+QE +   PC   E+           R  T+ +++ F   
Sbjct: 171 GDGIITNTFKIIRRMFRYGVKQELIPTTPCYGFEKGDELPTTKSKERTLTETEIKAFWGG 230

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG-- 240
                     R   +  L +G R  +        +    +    ++T     V       
Sbjct: 231 IDRCMISEDVRRILKLTLLTGQRPGEVASMHSSEISGRWWEFSPKETKITKEVPRKQRIY 290

Query: 241 FMKLLAMTPIGKETFFINNDK-----------QKMNATQFSIWFKA-------KATKAGV 282
              +       KE +   + K             +     +   +        K   A  
Sbjct: 291 LTDMTLSLIREKEGYIFPSPKIRTNVNEQPIDTPITERAVAYALRRNLLTHTVKPKPATW 350

Query: 283 NKS------------------------AHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
            KS                         H +R+  ATI ++ G +   + A        +
Sbjct: 351 KKSSHQSKDKKKFIIPDDKKLDIEKFCPHDLRRTCATILSEIGFSDEIVDAVLAHLKKGE 410

Query: 319 AETYTK---GADRIRLGIKNSRRISSVVDSDD 347
            +TY K     +R +      R++ S++    
Sbjct: 411 IKTYNKNKYDKERQKALEAWERKLKSIITGQK 442


>gi|186474623|ref|YP_001863594.1| integrase family protein [Burkholderia phymatum STM815]
 gi|184198582|gb|ACC76544.1| integrase family protein [Burkholderia phymatum STM815]
          Length = 343

 Score = 83.5 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 34/313 (10%), Positives = 91/313 (29%), Gaps = 42/313 (13%)

Query: 66  KKPTTLKWLISEYRKS--AHWGSLAVNSRISFESYFDQIIR--------KSGDFDYRKIT 115
           +KPT L   +  + +        ++V++  S+      ++R             D   + 
Sbjct: 4   RKPTELGRCLLRFFQDYLPTLRGVSVHTIRSYRDAVVLLLRFTARESRCPIEALDLSDLN 63

Query: 116 TKHIRSGV----ESRKHTPSSAIQFLTSMRVLFKWAVRQE---YVAINPCLSVERPKRKT 168
             H++  +      R ++ ++    L ++    ++ + +           L +   +   
Sbjct: 64  ADHVKRFLKFLESERGNSIATRNARLAAIHAFARFVIAEHPEHLAPFQQVLGIPFKRGAR 123

Query: 169 EGI-RPWTKEDMQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN--- 220
           E         +++   +        G +    F  +  +G R  +     +  L+ +   
Sbjct: 124 EAPIEYLETAEIETLLTTIDQSRPAGQRDFALFALMFNTGARVQEILNLRICDLRLDPPP 183

Query: 221 IFSIKTQKTGTIITVELPDG---FMKLLAMTP-----IGKETFFINNDKQKMNATQFSIW 272
              ++ +     +    P       +L+   P       +   F+N    +M+       
Sbjct: 184 QVRLRGKGNKVRVCPIWPRTAQLLRELIRTRPLVAQGSAELPVFVNCRGTQMSRFGVRYL 243

Query: 273 FKAKATKAGV--------NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            +     A              H +R  +A     AG     +    G  +++    Y +
Sbjct: 244 LRKYMLIASTRNPTLAHKEIHPHSLRHTTAIQLLKAGVDFATISQWLGHASLNTTMRYAR 303

Query: 325 G-ADRIRLGIKNS 336
              D  R  +   
Sbjct: 304 ADIDLKRQALAQV 316


>gi|253751680|ref|YP_003024821.1| tyrosine family site-specific integrase [Streptococcus suis SC84]
 gi|251815969|emb|CAZ51585.1| tyrosine family site-specific integrase [Streptococcus suis SC84]
          Length = 399

 Score = 83.5 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 43/279 (15%), Positives = 85/279 (30%), Gaps = 33/279 (11%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQ 135
           Y ++      +V  + +   +    I+  G    + IT +   +        ++ + A  
Sbjct: 87  YLRAYKQKVQSVTYKTALPHH-KLFIQYFGSKPLKAITPRDCEAFRLHIIENYSENYAKN 145

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL- 194
             +  +    +A R  Y++  PC +++ P+ K      WT  + Q F   +       L 
Sbjct: 146 LWSRFKACMGYAERLGYISDMPCKALDNPRGKHPETPFWTYAEFQTFIKSFDLHDYEELQ 205

Query: 195 ---AFEFLLYSGLRCSDSCRAGVQHLQ-----------------NNIFSIKTQKTGT-II 233
              A      +G+R S+      + +                   N +     KT     
Sbjct: 206 RFTAIWLYYMTGVRVSEGLSLCWEDIDFDKKFLKVHTTLEKDENGNWYRKDQTKTPAGER 265

Query: 234 TVELPDG----FMKLLAMTPIGKET-FFINNDKQKMNATQFSIWFKAKATKAGVNK-SAH 287
            +EL D                ++T F I+        +      K KA + GV   +  
Sbjct: 266 LIELDDITIEVLQVWRKNQFANQDTDFIISRFGDPFCKSTICRIIKRKAQQVGVPVITGK 325

Query: 288 GVRKFSATISADAG-ATAHELMATYGWKTVDQA-ETYTK 324
           G+R   A+   +        +    G         TY+ 
Sbjct: 326 GLRHSHASYLINVLKKDILYVARRMGHADKSTTLNTYSH 364


>gi|242310752|ref|ZP_04809907.1| integrase-recombinase protein xercd family protein [Helicobacter
           pullorum MIT 98-5489]
 gi|239523150|gb|EEQ63016.1| integrase-recombinase protein xercd family protein [Helicobacter
           pullorum MIT 98-5489]
          Length = 353

 Score = 83.5 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 70/190 (36%), Gaps = 22/190 (11%)

Query: 163 RPKRKTEGIRPWTKEDMQQFK--------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGV 214
           R K   +      +E++Q+F              G++ RL  + ++Y+G+R  ++    +
Sbjct: 158 RGKSGQKLPSYMNEEEVQRFLNGIETYPFKHQDLGARNRLLLKTIIYTGIRVGEALNLKI 217

Query: 215 QHLQ-NNIFSIKTQK-TGTIITV------ELPDGFMKLLAMTP--IGKETFFINNDKQKM 264
           + +  +  F +   K  G    V       +   F   +   P  +  E  F N+  +K+
Sbjct: 218 KDIMLDGEFYVIQVKGKGNKPRVVMIKAKNIHSDFGAWINSRPLEVENELLFCNHKAKKL 277

Query: 265 NATQFSIWFKAKATKAGVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
                S   +      G+ K    AH +R   AT+          +    G  ++D +  
Sbjct: 278 TQAYVSRIVEQVLLTNGIRKEKNGAHMLRHSFATLLYQKSQDLVLVQEALGHASLDTSRI 337

Query: 322 YTKGADRIRL 331
           YT   D+ +L
Sbjct: 338 YTH-FDKQKL 346


>gi|126661403|ref|ZP_01732464.1| phage integrase [Cyanothece sp. CCY0110]
 gi|126617310|gb|EAZ88118.1| phage integrase [Cyanothece sp. CCY0110]
          Length = 401

 Score = 83.5 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 42/307 (13%), Positives = 85/307 (27%), Gaps = 68/307 (22%)

Query: 91  SRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRKHTPSSAIQFLTSMRVLF 144
           +  ++  +  Q ++   + +   I        +     +  +++  ++    LT +R  +
Sbjct: 41  TIRTYRCHIKQFLQWCQNTELNPIEATFNQLTRFRHWLIHQQQYQNATISLKLTILRRFY 100

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRP---WTKEDMQQFKSFWS-----EGSQPRLAF 196
                  Y+  NP + ++ P    +          E+M +              + RL  
Sbjct: 101 DGLREYGYIINNPAIRLKAPTAVRDPAASINFLENEEMNRLLDSLPTENTVHALRDRLLI 160

Query: 197 EFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKLLAM------- 247
             ++  G R  D  R  ++++        ++         V L     KLL         
Sbjct: 161 SLMVLQGCRTVDLHRVTMENMVKNGKNIGLRVSSKRHTRVVPLTPDLAKLLRRYLRARRK 220

Query: 248 ---TPIGKETFFI----NNDK--QKMNATQFSIWFKAKATKAGV---------------- 282
                      FI    NN K  + ++   F           G+                
Sbjct: 221 AGELITESTPLFISVAWNNKKIWKPLSRRSFRRIVDKYLGVIGLKELPCPKTLKKLTGSQ 280

Query: 283 --------------------NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
                                 S H +R  +AT++  AGAT  ++    G         Y
Sbjct: 281 EKSNLPTKAREFSQHKPKPRKLSPHSLRHTAATLALRAGATLEQVQDLLGHTDPKTTMVY 340

Query: 323 TKGADRI 329
               DR 
Sbjct: 341 VHIGDRW 347


>gi|331007666|ref|ZP_08330803.1| phage like integrase [gamma proteobacterium IMCC1989]
 gi|330418532|gb|EGG93061.1| phage like integrase [gamma proteobacterium IMCC1989]
          Length = 398

 Score = 83.5 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 64/353 (18%), Positives = 118/353 (33%), Gaps = 35/353 (9%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
           ER  +G++    R   GR   L            + A+       E   +   K  TL  
Sbjct: 51  ERRVNGRVK---RISIGRYGHLTPSQAKLKAQEMLGAIAMGQNPAEERKATEAKSITLSA 107

Query: 74  LISEYRKSAHWGSLAVNSRISFESYF-----DQIIRKSGDFDYRKITTKHIRSGVESRKH 128
              +Y  +    SL   +  ++         D + R+  D +   +  +H   G ++   
Sbjct: 108 AFEDYLNTR--KSLKAGTIQNYRYSVNCHLSDWLNRRLSDINKNMVEERHREIGQKA--- 162

Query: 129 TPSSAIQFLTSMRVLFKWAV-------RQEYVAINPCLSVERPKRKTEGIRPWT---KED 178
            P+ A   +  +R +F  A+        +  ++ NP   + R +   +  R  T     +
Sbjct: 163 -PARANNTMRVLRAVFNHAIAKYEDAAGKSVLSFNPVDRLGRNRAWYKIDRRRTVIKAHE 221

Query: 179 MQQFKSFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIIT 234
           +  F       S    R  F FLL++GLR  ++       +      F+I   K     T
Sbjct: 222 LPVFYQATEALSNEVSRDYFRFLLFTGLRKMEAATLTWSQVDFIAKTFTIPDTKNRDPHT 281

Query: 235 VELPDGFMKLLAMTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKF 292
           + L +    LL    +   +   F +    + +  +        A   G   + H +R+ 
Sbjct: 282 LPLTNHLYDLLQFRKVHSHSQWVFPSPRDNEKHLKEPRGSVAMVAEALGSPFTLHDLRRT 341

Query: 293 SATISADAGATAHELMATYGWK--TVDQAETYTKGADRIRLGIKNSRRISSVV 343
             TI+      A+ L      K  T   A       +RIR   +   +IS  +
Sbjct: 342 FITIAESLDIPAYALKQLLNHKNPTDVTAGYIVSDVERIR---EPMEKISGFI 391


>gi|303326887|ref|ZP_07357329.1| integrase [Desulfovibrio sp. 3_1_syn3]
 gi|302862875|gb|EFL85807.1| integrase [Desulfovibrio sp. 3_1_syn3]
          Length = 360

 Score = 83.5 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 50/351 (14%), Positives = 109/351 (31%), Gaps = 29/351 (8%)

Query: 21  IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT--------TLK 72
           + Y     +  R++     E     A+  A      +   I    K+          T+ 
Sbjct: 15  VKYREPWTNKPRVKSFGKDEEEKARAFERAQADLYEREREIIRRAKRRRAAQAPAGITVD 74

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE---SRKHT 129
            L+  Y  +        ++R + + +    +   G      I+ + + + +E    R   
Sbjct: 75  DLLQRYMDTLS----NPSTRAANDYHLRLFLSIYGHRKAHCISMEDVAAFLELQAKRGVG 130

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            S+A + +  +R  + WAVR   +++NP   ++      +   P T  + +   +  +  
Sbjct: 131 KSTACRRVGIVRTAYTWAVRWGLLSVNPLAGLQLSSPTPQTPDPPTAREARMLFATAAPH 190

Query: 190 SQPRLAFEFLLYSGLRCS--DSCRAGVQHLQNN--IFSIKTQKTGTII---TVELPDGFM 242
            Q        + +G R    +  R     +     +  +     G  +    V L    +
Sbjct: 191 LQ--RVIAIGMATGARIGPSELFRLRWTDVDTRVAVLRMPNASKGAPLEAREVPLRSDLL 248

Query: 243 KLLAMTPIGKETFFI--NNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISA 298
           ++L                  +       S  +     +AG+++    + +R   A+ S 
Sbjct: 249 RMLRQWEKEDAALGCPWVIHYKGRPVRSISRAWHNTLRRAGISRRIRPYDLRHAFASRSL 308

Query: 299 DAGATAHELMATYGWKTVDQ-AETYTKGADRIRLGIKNSRRISSVVDSDDP 348
           D GA    +    G          Y     R R    N+     +  + DP
Sbjct: 309 DHGAELKCVAEIMGHANEKMIVRFYRHTNPRARRKAINAAPSLGLDKNMDP 359


>gi|291009717|ref|ZP_06567690.1| phage integrase family site specific recombinase [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 237

 Score = 83.5 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 41/219 (18%), Positives = 70/219 (31%), Gaps = 16/219 (7%)

Query: 128 HTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            + S+A+     ++  FKW A  ++ +  +P   V+ P   T+ +     ED ++     
Sbjct: 5   RSASTALNKHKVLQQFFKWLAEDEQEIDRSPMERVKAPTTPTKLVPVMGDEDTKKILDTC 64

Query: 187 SEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDG- 240
           +  +    + +        +G R ++        L     S+    K G    V      
Sbjct: 65  NGKTFTDLRDQAIIRLYYGTGARLAEVANLTTDDLDMATDSVVYQGKGGKSRRVRFGPKT 124

Query: 241 -------FMKLLAMTPIGKETFFINNDK-QKMNATQFSIWFKAKATKAGVNK-SAHGVRK 291
                               + ++     Q + A    I  K +   AGV+   AH  R 
Sbjct: 125 ARALSRYLRARSRHRAADVPSLWLAARGAQPLQANGIKIMLKRRGKHAGVSGVHAHRWRH 184

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
             A     AG    +LM   GW T   A  Y   A   R
Sbjct: 185 NYAHAWKLAGGDTGDLMLLLGWSTDAMARHYGASAAAER 223


>gi|187921188|ref|YP_001890220.1| integrase family protein [Burkholderia phytofirmans PsJN]
 gi|187719626|gb|ACD20849.1| integrase family protein [Burkholderia phytofirmans PsJN]
          Length = 455

 Score = 83.5 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 49/319 (15%), Positives = 112/319 (35%), Gaps = 34/319 (10%)

Query: 46  AYMSALTGSTPKREYI--NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-I 102
           AY +   G +P R  +   +   +  T       Y       +LA ++R   +S +++ +
Sbjct: 88  AYGAIQRGHSPSRAKVEKRAEAAEALTFGKWAERYFAE---TALADSTRSMRKSVYERNL 144

Query: 103 IRKSGDFDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
             + G     +IT   + +  E  K     + A+     +  +F++   +     NP  +
Sbjct: 145 ASEFGRLKLEEITPVRLMARCEKIKERGAAAQAVHAREIVLQVFRFVEARGIKVDNPAAA 204

Query: 161 VERPKRKT--EGIRPWTKEDMQQFKSFWSE-GSQP--RLAFEFLLYSGLRCSDSCRAGVQ 215
           +      T     R  + E++  F +      + P  RLA +F+L + +R S+   A   
Sbjct: 205 IRPSAIATFKARDRALSPEEIYIFFNALDLTPTTPTLRLATKFMLLTLVRKSEFIDATWD 264

Query: 216 HLQNNIFSIK----TQKTGTIITVELPDGFMKLLAMTPI--GKETFFINNDKQ-----KM 264
            +     +        K      V L +  +++L       G   +   +  +      +
Sbjct: 265 EVNFETATWTIPKERMKARRPHHVYLSEQALEILVAFKTCFGSSQYL--HPGRYETASPI 322

Query: 265 NATQFSIWF----KAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           +A   +       K    +       + H +R+ ++T   +AG  +  +      +    
Sbjct: 323 SAATLNRVIDSTVKLICARGDTFEPFTVHDLRRTASTHLHEAGFNSDWIEKCLAHEQRGV 382

Query: 319 AETYTKG--ADRIRLGIKN 335
              Y K   A++ R+ ++ 
Sbjct: 383 RAIYNKAEYAEQRRVMLQA 401


>gi|294852004|ref|ZP_06792677.1| tyrosine recombinase xerC [Brucella sp. NVSL 07-0026]
 gi|294820593|gb|EFG37592.1| tyrosine recombinase xerC [Brucella sp. NVSL 07-0026]
          Length = 308

 Score = 83.5 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 76/239 (31%), Gaps = 15/239 (6%)

Query: 96  ESYFDQIIRKSGDFDYRKITT---KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEY 152
            S+ D+I        +          I   +  R ++ ++  + + ++  L + A +   
Sbjct: 63  RSFLDEIDEILKGARFSGFDQEMLDSIIGTLRERGNSNATINRKMAALSKLLRKAHKMGD 122

Query: 153 VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY-SGLRCSDSCR 211
           +  N    + R K +   IR   +E+ ++  +      +        L  +G R  ++  
Sbjct: 123 I-FNLPEFI-RQKERVGRIRFLEQEEKKRLFAAIKSRCEDSYRLSVFLVDTGCRLGEAIG 180

Query: 212 AGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI 271
                +Q    +    K+    TV L     K   + P  +    +      +N  +F  
Sbjct: 181 LTWNDIQEQRVTFWVTKSNRSRTVPLTRRARKASHI-PRER----LKGPFSMLNQVRFRQ 235

Query: 272 WFKAKATKAGVNKS----AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            +     + G+        H +R   A+     G     +    G +T+     Y   A
Sbjct: 236 IWNEAKAEVGLGADDQIVPHILRHTCASRLVRGGIDIRRVQMWLGHQTLQMTMRYAHLA 294


>gi|315506748|ref|YP_004085635.1| integrase family protein [Micromonospora sp. L5]
 gi|315413367|gb|ADU11484.1| integrase family protein [Micromonospora sp. L5]
          Length = 403

 Score = 83.5 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 43/276 (15%), Positives = 85/276 (30%), Gaps = 42/276 (15%)

Query: 88  AVNSRISFE-SYFDQIIRKSGDFDYRKITTKHI-RSGVESRKHTPSSAIQFLTSMRVLFK 145
           A  +   +  S    I+   G+   R+ +   + R   +  K  PS+A      +  +F 
Sbjct: 93  APQTIHRYATSVRTSILPALGNLRIREASVGRLDRFLRDIAKDRPSAAKGVKVVLSQMFA 152

Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP------------- 192
            AVR   +  NP     R ++    +   T E +Q  ++   E  +P             
Sbjct: 153 LAVRHGAIPTNPVRDTGRLRKPRRAVVVLTAEQLQAVRTAIREWQRPIPGKPGPRHSGDL 212

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQ-------------------NNIFSIKTQKTGTII 233
               + +L +G R  +      + L                       F     K+    
Sbjct: 213 ADVVDLMLATGARIGEILALRWEDLDLAAERPTLTICGTLVFIKSQGFFRQPWTKSDAGY 272

Query: 234 TVELPDGFM--KLLAMTPIG----KETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SA 286
              +   F    L+A  P       +  F +     ++       ++    +A ++  + 
Sbjct: 273 RRVVLPRFAVGMLMARKPTAADNPHDAIFASRRGTWLSPNNVRRQWRQARAEADLDWVTP 332

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           H  RK  AT+  +         A  G  + +  +TY
Sbjct: 333 HTFRKTVATLIKEE-IDTKSAAAQLGHSSEEVTDTY 367


>gi|166032260|ref|ZP_02235089.1| hypothetical protein DORFOR_01963 [Dorea formicigenerans ATCC
           27755]
 gi|166027983|gb|EDR46740.1| hypothetical protein DORFOR_01963 [Dorea formicigenerans ATCC
           27755]
          Length = 364

 Score = 83.5 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 48/290 (16%), Positives = 94/290 (32%), Gaps = 43/290 (14%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVES--- 125
           + +  +  Y        +  N+ ++ +   + +I+   G      I T  +         
Sbjct: 57  SFQSFVDIYLTDLE-PRIKRNTFLTKKHIIETKILPYFGKRKLDDIRTSDVIQWQNEIMK 115

Query: 126 -RKH-----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV-ERPKRKTEGIRPWTKED 178
            +K      +P+        +  +   AV    +  N         K + + +  WT+E+
Sbjct: 116 LKKDNGELFSPTYLKTIHNQLSAILNHAVNMYGLKDNVARKAGTMGKEENKEMEFWTQEE 175

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT--------- 229
            Q F    ++      AFE L ++GLR  +              +++  K+         
Sbjct: 176 FQAFLECVADKPISYYAFEMLYWTGLREGELLALTPADFNFEKKTLRINKSYQRLEGKDV 235

Query: 230 -------GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW-------FKA 275
                   +  T+ +PD          I  E F  +    KM+   F+I           
Sbjct: 236 ITDPKTPKSNRTIVMPDFLT-------IEMEDFIKSIYGIKMDDRIFTISKSYLHHEMDR 288

Query: 276 KATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            A  AGV +   HG+R    ++  + G +A  +    G + VD    Y  
Sbjct: 289 GAKLAGVKRIRIHGLRHSHISLLLNLGFSALAIGERVGHEAVDITYHYAH 338


>gi|38707923|ref|NP_945064.1| gp33 [Burkholderia phage phi1026b]
 gi|76811542|ref|YP_333058.1| phage integrase family protein [Burkholderia pseudomallei 1710b]
 gi|254261569|ref|ZP_04952623.1| gp33 [Burkholderia pseudomallei 1710a]
 gi|38505415|gb|AAR23184.1| gp33 [Burkholderia phage phi1026b]
 gi|76580995|gb|ABA50470.1| Phage integrase family [Burkholderia pseudomallei 1710b]
 gi|254220258|gb|EET09642.1| gp33 [Burkholderia pseudomallei 1710a]
          Length = 366

 Score = 83.5 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 45/349 (12%), Positives = 92/349 (26%), Gaps = 50/349 (14%)

Query: 17  RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76
           +HG   +      G+ IRL    +          +     +R+    P +    ++ LI 
Sbjct: 16  KHGAWYWS-EPVSGQWIRLCKLTDDE-----TRLVERLAEERKKRERP-EGSGDMRPLID 68

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE-SRKHTPSSAIQ 135
           +Y + +           ++  Y D         +   +   H+ + ++            
Sbjct: 69  QYVRESKLLHKE----KAWPKYGDYAGNGFRKVNVADVKPTHVHNWLKVKYAGKLHMQRV 124

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK------------ 183
               +   F+W V +     NPC  V+  K K       T       +            
Sbjct: 125 MRAFLSGFFQWCVDKGKRDTNPCREVKLKKPKPRQTYI-TDAHFSAIRNAMLETTYKLNS 183

Query: 184 ---------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKT--- 229
                    +    G   +   +    +  R ++        +     +      KT   
Sbjct: 184 GTDSEKEVVADVPTGPMMQCIIDLCYLTAQRSTEIRTLKWSDVDREAGVIHFVPSKTADS 243

Query: 230 -GTIITVELPDGFMKLLA-------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281
            G  +  ++     ++L           IG          +   A      +K  A +A 
Sbjct: 244 SGVRVDFKITPEINEVLLRIQQIDGRPTIGDMPVVHTRKGKMYAANTILKAWKTAAKRAN 303

Query: 282 V---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           +     +   +R  + T    AG     L            ETY K  +
Sbjct: 304 LSHFGYTVKDIRAKALTDGERAGYDVKALQIAAAHTDEKMTETYIKKRN 352


>gi|26990692|ref|NP_746117.1| phage integrase family site specific recombinase [Pseudomonas
           putida KT2440]
 gi|24985683|gb|AAN69581.1|AE016591_9 site-specific recombinase, phage integrase family [Pseudomonas
           putida KT2440]
          Length = 319

 Score = 83.5 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 30/227 (13%), Positives = 64/227 (28%), Gaps = 26/227 (11%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
           L  + + Y +    G +   ++        Q+     D     IT + +    + R    
Sbjct: 37  LGDVFNRYERDVIPGKM-PRTQKDNLLSLRQLRAAFSDAPIDAITPQIVAQYRDKRSGKV 95

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAI-NPCLSVERPKRKTE----GIRPWTKEDMQQFKSF 185
             A + ++ +  ++  A         NP   V + K +      G   W          +
Sbjct: 96  R-ANREISLLSHIYNMAREWGITDRENPAAGVRKNKERPRDFYAGPEIWN-------AVY 147

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP------- 238
               S+ R A +    +G R +D          +    +   KT   + +EL        
Sbjct: 148 DRAASELRDAMDLAYLTGQRPADVLTMRAADCDDKYLQVAQGKTSKKLRIELRSGEQVNH 207

Query: 239 -----DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280
                +  +       +         D + + A+   + F      A
Sbjct: 208 LGLLIERLLAQRKERGVCNPYLITTQDGRAVTASMLRLRFDDARKTA 254


>gi|21232443|ref|NP_638360.1| phage-related integrase [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|21114224|gb|AAM42284.1| phage-related integrase [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
          Length = 399

 Score = 83.5 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 49/343 (14%), Positives = 83/343 (24%), Gaps = 65/343 (18%)

Query: 46  AYMSALTGSTPKREYINSPRKKPTTLKWLISEYR------KSAHWGSLAVNSRISFE--- 96
           A  SA                   TL +L   +        S+ +  LA  ++  +    
Sbjct: 51  ALASARLSELHAIVEAARGGSAQGTLAYLCDHFLGTPPIAASSEFKELAAGTQKDYRQCA 110

Query: 97  ----SYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-------------TPSSAIQFLTS 139
               SY  +     G     ++    I+  VE+  +              PS A   L  
Sbjct: 111 AAACSYVLKDGSTLGKMQVARMNIPMIQRLVETLANGRSASASQPLIEPRPSKANHVLRF 170

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE-----DMQQFKSFWSEGS---- 190
           +R LF W +R    A NP   V + +   E   P +       D  + +      S    
Sbjct: 171 LRRLFSWGMRFGLCAHNPAKGVRQARELAEHKMPESDAFATILDFARQRGRLKAHSLGSV 230

Query: 191 --QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL---- 244
                   +      LR  +       H          +K          D   +     
Sbjct: 231 SPYLHAVMQLAYNLRLRGVEVTELTDAHADEVGIRSNRRKGSRDNITTWNDELREAWQWL 290

Query: 245 -------------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK------- 284
                               K    +N     ++       ++     A   K       
Sbjct: 291 VGYRKDAMSARGRPVELKPEKRRLLVNQSGTPLSKGALDSAWQRMMQMAIREKVIREDQR 350

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            S HG++    T +    A         G K+    + Y    
Sbjct: 351 FSLHGLKHRGITDTVGNRADK---QDAAGHKSPHMTQRYDHQV 390


>gi|86750417|ref|YP_486913.1| Phage integrase [Rhodopseudomonas palustris HaA2]
 gi|86573445|gb|ABD08002.1| Phage integrase [Rhodopseudomonas palustris HaA2]
          Length = 450

 Score = 83.5 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 57/335 (17%), Positives = 99/335 (29%), Gaps = 43/335 (12%)

Query: 30  GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAV 89
            RR++L     +       +A        E  N  R+K  T+  ++  Y KS   G L+ 
Sbjct: 85  HRRLKLTGADPADQRRVERAANLARIRAEEIEN--RRKDDTVALVLERYFKSHVNGLLSA 142

Query: 90  N-SRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAV 148
             ++           R+  D   R    K + +  E     P  A +        FKW +
Sbjct: 143 RETKRILTRELSGWARRRIDHVSRADAVKLLEAIQER--DKPILANRTRAHASKFFKWCI 200

Query: 149 RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP-RLAFEFLLYSGLRCS 207
            +  + INP     R  ++    R  +  +++           P R     LL  G R  
Sbjct: 201 EKGLLEINPFEHTTRAAKEIARDRVLSDAELRILLLANDRLEWPWREYIAVLLMLGQRRE 260

Query: 208 DSCRAGVQHLQNN------IFSIKTQKTGTIITVELP------------DGFMKLLAMTP 249
           +        L  +      + +    K G    V LP              F +++   P
Sbjct: 261 EVAGMRWDALDLDCAEPVWLMAASRYKNGQPHAVPLPAAVVSILRSIGRMHFTEIIDGAP 320

Query: 250 IGKETFFINNDKQKMNATQF--------SIWFKAKATKA-----------GVNKSAHGVR 290
             KE+ F+     +   + F         I  +    +A            +    H +R
Sbjct: 321 TLKESPFVFTTTGRTAISGFSKAKVQLTGIMHEIACGEAKARGESTATIEKIEWRLHDLR 380

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           +  AT  A        +    G K       Y + 
Sbjct: 381 RTMATTMARLKINVVTIERVLGHKMQGVMAVYQRY 415


>gi|2781317|pdb|1AE9|A Chain A, Structure Of The Lambda Integrase Catalytic Core
 gi|2781318|pdb|1AE9|B Chain B, Structure Of The Lambda Integrase Catalytic Core
          Length = 179

 Score = 83.5 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 58/169 (34%), Gaps = 17/169 (10%)

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
            E ++ +++  S     RLA E  + +G R  D C      + +    ++  KTG  I +
Sbjct: 7   DEYLKIYQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAI 66

Query: 236 E---------LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---- 282
                     +            +G ET   +  ++ +++   S +F      +G+    
Sbjct: 67  PTALHIDALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEG 126

Query: 283 -NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
              + H +R   +    +   +        G K+   A  +    DR R
Sbjct: 127 DPPTFHELR-SLSARLYEKQISDKFAQHLLGHKSDTMASQF--RDDRGR 172


>gi|289668108|ref|ZP_06489183.1| putative integrase [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 285

 Score = 83.5 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 39/250 (15%), Positives = 72/250 (28%), Gaps = 56/250 (22%)

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINP-CLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           +  +  Q L ++  L++  +  E     P   ++ R KR        + +++ +  +   
Sbjct: 23  SAGTQNQALAALLFLYREVLGVEL----PWMENLVRAKRPRRIPVVLSADEVARLLTMLE 78

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELP------- 238
                RL    L  SG+R  +  R   + +        ++  K G    V LP       
Sbjct: 79  GSC--RLMAGLLYGSGMRLLECLRLRTKDVDVVRGEIVVRDGKGGKDRQVPLPHILRGKL 136

Query: 239 -----DGFMKLLAMTPIGKETFFI---------------------------------NND 260
                   +   A    G    F+                                    
Sbjct: 137 MQQRERALLLHDADLAEGAGRVFLPHALARKYPNVDVEPGWQYLFLAARRSVDPRSGRVG 196

Query: 261 KQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           +  ++        +    +AG+ K A  H +R   AT   +AG     +    G K V  
Sbjct: 197 RHHLSEEVLQRAVQVARRQAGITKPATCHTLRHAFATHLLEAGHDIRTVQELLGHKDVTT 256

Query: 319 AETYTKGADR 328
            + YT    R
Sbjct: 257 TQIYTHVLGR 266


>gi|205357971|ref|ZP_02574459.2| integrase [Salmonella enterica subsp. enterica serovar 4,[5],12:i:-
           str. CVM23701]
 gi|205328565|gb|EDZ15329.1| integrase [Salmonella enterica subsp. enterica serovar 4,[5],12:i:-
           str. CVM23701]
          Length = 446

 Score = 83.5 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 49/321 (15%), Positives = 98/321 (30%), Gaps = 75/321 (23%)

Query: 75  ISEYRKSAHWGSL-----AVNSRISFESYFDQIIRKSGD--------------------F 109
           I+    +  W  L     + N+   +ES    ++   G+                     
Sbjct: 98  ITVLELTERWSELKRMEISSNTMSRYESIIKNMLPLIGENKMVSAVTTEDLLYVRKELLT 157

Query: 110 DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
            ++ +   H R+ V+ RK   S+   ++  M  +F++     Y   NP   + R K+   
Sbjct: 158 GFQVMKKDH-RTQVKGRKS--STVNNYMMLMAEIFQFGTDNGYAKENPFSGINRLKKAKG 214

Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229
              P T ++  +F        Q R  +   +Y+G+R  + C    + +  +  +I  ++ 
Sbjct: 215 EPDPLTTDEFIRFIQACG-HQQMRNLWSLAVYTGMRHGELCGLAWEDIDLHAGTIIVKRN 273

Query: 230 --------------GTIITV----ELPDGFMKLLAMTPIGKE------------------ 253
                         GT   +       D       +T +G++                  
Sbjct: 274 LTQTDEFTLPKTDAGTDRVIYLIQPAIDALRNQAQLTRLGRQFEVEVKLREYGQSVIQPC 333

Query: 254 TFFIN--------NDKQKMNATQFSIWFKAKATKAGVNKS-AHGVRKFSATISADAGATA 304
           TF  +                   +  +     +AG+    A+  R   A  S  AGA  
Sbjct: 334 TFVFSPQCVKRGPRTGYHYAVNSINKIWAPIIKRAGIRYRNAYQSRHTYACWSLSAGANP 393

Query: 305 HELMATYGWKTVDQA-ETYTK 324
           + +    G        + Y K
Sbjct: 394 NFIATQMGHTDAQMVYKVYGK 414


>gi|167771160|ref|ZP_02443213.1| hypothetical protein ANACOL_02515 [Anaerotruncus colihominis DSM
           17241]
 gi|167666830|gb|EDS10960.1| hypothetical protein ANACOL_02515 [Anaerotruncus colihominis DSM
           17241]
          Length = 322

 Score = 83.5 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 43/284 (15%), Positives = 84/284 (29%), Gaps = 33/284 (11%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKH 128
           TLK  I  +++          +  +    F + I+   G+    ++TT+ +   +E R+ 
Sbjct: 2   TLKDYILRWQEVYDKNQSRPTTYAAHGYLFKNHILPGLGEIQLSELTTEQVGDFLEERRR 61

Query: 129 --------------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
                            +       ++     A+R   +A NP  +   PK K       
Sbjct: 62  YGGHRLESPEYPGLGKHTMRHIHRLLQQCLDQAMRDGLIADNPARAFRYPKPKKVSANVL 121

Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKT---- 229
           T  +++ +    +        F   L  GLR  +        L     ++  T+K     
Sbjct: 122 TPAEVEDYLDAAARLGH-LPMFLLALTVGLRQGELIALKWSDLDTKERTLTITEKRSVER 180

Query: 230 -------GTIITVELPDGFMKLLAMTPIGK----ETFFINNDKQKMNATQFSIWFKAKAT 278
                  G    V L +  +K L +           F     ++  +             
Sbjct: 181 RELVEYEGGTRIVSLTEEVVKFLCLEHAKHLRSPLMFMHPATQKPYSPQMVRRLHNEIIR 240

Query: 279 KAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
           +AG++      +R   A +S   G  A E+    G         
Sbjct: 241 EAGLDHIRFADLRHTCAVLSLQNGMDAKEVSQMLGHFRTAMTRQ 284


>gi|25986875|gb|AAN16061.1| integron integrase [Pseudomonas stutzeri]
          Length = 320

 Score = 83.5 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 43/313 (13%), Positives = 97/313 (30%), Gaps = 58/313 (18%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129
           L+ + R+        + +   +  +  + IR       +++  + I + +     +R  +
Sbjct: 7   LLDQMRERIRLKHYFIRTERVYCEWVKRFIRFHQYRHPQEMGAQEIEAFLTELAVARNVS 66

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            S+  Q L+++  L+K  +    + +     V R K+        T E+++   +     
Sbjct: 67  ASTQNQALSALLFLYKEVLS---IDLPWLADVVRAKKPQRLPVVLTVEEVRSALAQLE-- 121

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAM 247
           S+P L    L  +G+R  ++ R  V+ +    +   I+  K        LP   ++ L  
Sbjct: 122 SEPWLVCSLLYGTGMRLMEALRLRVKDVDFSRHEILIRDGKGMKDRVTMLPRSLVQPLRR 181

Query: 248 -------------TPIGKETFFINN--------------------------------DKQ 262
                             + +                                     + 
Sbjct: 182 HLAVVKAIHDSEREQGRGDVWLPFALARKYPKAPKEWGWQYVFPASGLSVDPRSGVVRRH 241

Query: 263 KMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
            ++  +    FK     A +    + H +R   AT   ++G     +    G   V    
Sbjct: 242 HLDEKRIQRAFKRAVRGASIVKPATPHTLRHSFATHLLESGQDIRTVQELLGHSDVKTTM 301

Query: 321 TYTKGADRIRLGI 333
            YT   +R  L +
Sbjct: 302 IYTHVLNRGGLSV 314


>gi|330971325|gb|EGH71391.1| Phage integrase [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 286

 Score = 83.5 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 44/247 (17%), Positives = 89/247 (36%), Gaps = 31/247 (12%)

Query: 89  VNSRISFESYFDQIIRKSGDF---DYRKITTKHIRSGVESRKHTP---SSAIQFLTSMRV 142
             +R ++++  +      G     ++R +T  H+ +     K      S+  + L+++  
Sbjct: 39  PRTRRAYQTDLEDFCSSVGLATADEFRMVTRSHVLAWRAQLKKRGLAGSTIRRKLSALAS 98

Query: 143 LFKWAVRQE-YVAINPCLSVERPKRKT-EGIRPWTKED-----MQQFKSFWSEGSQPRLA 195
           LF   +        NP   ++RP  +T EG  P   +      +    +   +G + R  
Sbjct: 99  LFDHLLESNAVAGGNPVHGIKRPMIETNEGKTPALGDHQAKALLDAPDATTLKGLRGRAI 158

Query: 196 FEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTII-TVELPDGFMKLLAMTPIGK 252
              LLY GLR  ++ +  V HL  +  I  +     G+ +  + +    M  L       
Sbjct: 159 LAVLLYHGLRREEAAQLLVNHLVERRGIKHLVIHGKGSKVRYLPVHPMAMDRLLSYWERS 218

Query: 253 ETFFINNDK------QKM------NATQFSIWFKAKATKAGV---NKSAHGVRKFSATIS 297
               +N+        +         A       +A A +AG+       +G+R  +AT +
Sbjct: 219 GHHLVNSKGAMFLPLRHWTKGVGVTANGIYTLVEAYAKQAGIQVEGLGVYGLRATAATNA 278

Query: 298 ADAGATA 304
            +  A  
Sbjct: 279 LEHEADI 285


>gi|253572132|ref|ZP_04849536.1| integrase [Bacteroides sp. 1_1_6]
 gi|251838312|gb|EES66399.1| integrase [Bacteroides sp. 1_1_6]
          Length = 396

 Score = 83.5 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 55/290 (18%), Positives = 112/290 (38%), Gaps = 26/290 (8%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVESRKHTPSSAI 134
           +++  +  SL  ++R +  S  + +     D  +  +T        + ++S+ +  ++  
Sbjct: 112 FKEEVNNSSLKESTRQNHLSTLELLQEYKKDIVFTDLTFEFVSSFDNYLQSKGYHLNTIA 171

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP-WTKEDMQQFKSFWSEGSQPR 193
           + +  ++     A+ +EY+ I      +   +  EG     + E++ + +    EG   +
Sbjct: 172 KHMKHLKRYVNVAINKEYMDIQKYAFRKYKIKSIEGSHTHLSPEELNKMEEVNLEGKFTK 231

Query: 194 L-----AFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDGF--- 241
           L     AF F  Y+GLR SD       ++    Q      K+ KTG  + + L   F   
Sbjct: 232 LQKSKDAFLFCCYAGLRYSDFINLTAANIVELHQETWLIYKSVKTGIDVRLPLYLLFEGK 291

Query: 242 -MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISA 298
            +++L         FF   D   +N         A A  A ++K  S H  R  +AT+  
Sbjct: 292 GLRVLENYKDDLNGFFRLKDNSNVNKD-----LNALAKLAEIDKRISFHTARHTNATLLI 346

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
            +GA    +    G K+V   + Y    D     + +  + +    ++ P
Sbjct: 347 YSGANITTVQKLLGHKSVKTTQVYANIMDMT--IVHDLEKAAYSKLANRP 394


>gi|228942827|ref|ZP_04105346.1| Transposase A from transposon Tn554 [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228952547|ref|ZP_04114624.1| Transposase A from transposon Tn554 [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228976709|ref|ZP_04137133.1| Transposase A from transposon Tn554 [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228783010|gb|EEM31165.1| Transposase A from transposon Tn554 [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228807158|gb|EEM53700.1| Transposase A from transposon Tn554 [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228816841|gb|EEM62947.1| Transposase A from transposon Tn554 [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|326943508|gb|AEA19401.1| Transposase A from transposon Tn554 [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 365

 Score = 83.5 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 60/186 (32%), Gaps = 18/186 (9%)

Query: 151 EYVAINPCLSVE--RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD 208
           +++   P   +   + K     I+  T +  +          +  L    L   GLR S+
Sbjct: 154 DHITHTPTTKINILKLKEPKRKIKTITTKQAE-LIHIACNNIRDELIIRILYEGGLRASE 212

Query: 209 SCRAGVQH--LQNNIFSIKTQKT--GTIITVELPDGFMKL-------LAMTPIGKETFFI 257
                ++   + +   +++  KT  G    V + +  M L            +     FI
Sbjct: 213 LLSLWIEDFNINDGSITVRESKTQAGEKRKVYVSNETMNLFQDYIIDYHTNDVDSNHVFI 272

Query: 258 N----NDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGW 313
           N    N  Q M         +  + K  +N +AH +R   AT   D G  A  +    G 
Sbjct: 273 NLKGKNKGQPMQYWALQAVIRILSKKTKINFTAHTLRHTCATQLYDLGMDAGIIQKLLGH 332

Query: 314 KTVDQA 319
             V   
Sbjct: 333 AQVQTT 338


>gi|301311429|ref|ZP_07217356.1| integrase [Bacteroides sp. 20_3]
 gi|300830515|gb|EFK61158.1| integrase [Bacteroides sp. 20_3]
          Length = 401

 Score = 83.5 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 43/267 (16%), Positives = 94/267 (35%), Gaps = 28/267 (10%)

Query: 92  RISFESYFDQIIRK--SGDFDYRKITTKHIRS----GVESRKHTPSSAIQFLTSMRVLFK 145
           ++ ++    +  +K    D    +   + I             + +S  + L  +R    
Sbjct: 138 KLVYQR-LGEFCKKSRINDMPLDQFNRQTIHDLEIFFKADYNLSVNSTAKMLEFIRKGIL 196

Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ---PRLAFEFLLYS 202
           WA +   + INP  +  R K++   ++   K+++ + +    +  +    R +F F  ++
Sbjct: 197 WAYQCGLILINPFSAY-RIKKEDTQVQFLNKQEISRIRKKQLDIPRLDLVRDSFVFSCFT 255

Query: 203 GLRCSDSCRAGVQHL-----QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI 257
           G+  +D C+     +      +        KT     + L    M++L       +    
Sbjct: 256 GISYADMCKLTKDQIVFDSKSSGYIHFYRTKTNHPAFIPLLPQSMEIL------DKYINQ 309

Query: 258 NNDKQ--KMNATQFSIWF-KAKATKAGVNK--SAHGVRKFSA-TISADAGATAHELMATY 311
           NN  +   M + Q +  + K  A   G+ K  + H  R   A TI  + G     L    
Sbjct: 310 NNSGKIFPMLSNQKTNAYLKELADICGIKKKLTYHVARHSFAVTICLENGIPIETLSKIL 369

Query: 312 GWKTVDQAETYTKGADRIRLGIKNSRR 338
           G   +   + Y K   +  +    + +
Sbjct: 370 GHTNLRVTQAYAKITHKKVMNDMQALK 396


>gi|148359487|ref|YP_001250694.1| phage related integrase [Legionella pneumophila str. Corby]
 gi|148281260|gb|ABQ55348.1| phage related integrase [Legionella pneumophila str. Corby]
          Length = 413

 Score = 83.5 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 59/311 (18%), Positives = 109/311 (35%), Gaps = 34/311 (10%)

Query: 51  LTGSTPKREYINSPRK----KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS 106
           L G   K +   + +K    K  TLK    +Y K      L + +   ++S   Q+I   
Sbjct: 81  LLGQIAKGDNPIAEKKINKIKSITLKEAFHDYLK--ARKDLKILTIKDYQSILKQVISDW 138

Query: 107 GDFDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWA-----VRQE--YVAINP 157
            D     IT + I         T   + A   +  +R +F +A     +      +AINP
Sbjct: 139 FDKPLMNITREMIAKRHAQYGQTNSKARANYAMRVLRAVFNFAAHEYQLEDGQPIIAINP 198

Query: 158 CL---------SVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA---FEFLLYSGLR 205
                       V+R     +  +     +         + SQ  +    F  +L++GLR
Sbjct: 199 VEYLSHTRSWYRVDRKNTMIKSHQLAAWHEGLTRLGEQEDYSQAMMWKDYFLLVLFTGLR 258

Query: 206 CSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK--ETFFINNDK 261
            +++     + +   +  F+++  K   + T+ + D   +L       K  E  F +  K
Sbjct: 259 RTEAASLCWKDVDFKDKTFTVQDTKNREVHTLPMSDFLYELFLRRKQFKMNEFVFPSPSK 318

Query: 262 QKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWK--TVDQA 319
                       K  A  +GV+ + H +R+  AT +      A+ L      K      A
Sbjct: 319 TGHVIDPRKAMLKV-AELSGVSFTVHDLRRTFATTAESLDLPAYALKRLLNHKMNNDVTA 377

Query: 320 ETYTKGADRIR 330
               +  +R+R
Sbjct: 378 GYIMRDVERLR 388


>gi|260596908|ref|YP_003209479.1| Prophage DLP12 integrase [Cronobacter turicensis z3032]
 gi|260216085|emb|CBA28835.1| Prophage DLP12 integrase [Cronobacter turicensis z3032]
          Length = 387

 Score = 83.5 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 80/223 (35%), Gaps = 24/223 (10%)

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWA-VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
            E R  T S+  + L  M+ + + A    +++   P   ++ P+ + + +R    E+ ++
Sbjct: 136 FEGRPVTTSTKAKHLALMKAILRAAERDWKWLEKAPV--IKIPQVRNKRVRWLEPEEAER 193

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVEL 237
             +   E  +  + F     +GLR S+      Q +         + +  K+   I V L
Sbjct: 194 LINECPEPLKSVVRFALA--TGLRRSNIINLEWQQIDMQRRVAWVNPEDSKSNRAIGVAL 251

Query: 238 PDGFMKLLAMTPIGKETFFINNDK-------------QKMNATQFSIWFKAKATKAGV-N 283
            D   ++L         +   + K             +KM       W      +AG+ +
Sbjct: 252 NDTACRVLREQIGNHHKWVFVHTKAGNRPDGSATDQVRKMRVDDQRAWNS-ACRRAGIED 310

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
              H +R   A+    AG     L    GW++++    Y   A
Sbjct: 311 FRFHDLRHTWASWLIQAGVPLSVLQEMGGWESIEMVRRYAHLA 353


>gi|221632161|ref|YP_002521382.1| transposase [Thermomicrobium roseum DSM 5159]
 gi|221156797|gb|ACM05924.1| transposase [Thermomicrobium roseum DSM 5159]
          Length = 316

 Score = 83.5 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 43/301 (14%), Positives = 98/301 (32%), Gaps = 40/301 (13%)

Query: 82  AHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRS---GVESRKHTPSSAIQFL 137
               SL   +   +ES    +II   G     K+  + +++    + ++  +  S     
Sbjct: 4   GRRTSLRPRTWAGYESIVRVRIIPALGRLPLDKVEPQVLQAFASQLLTQGLSVQSVQNTH 63

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE 197
             +   F  AV+   +  NPC  V+  +     +R  T  ++ +  +  ++     L   
Sbjct: 64  PLLHRPFADAVKWGLLGRNPCDLVDLSRASRLQLRALTAPEVARLLATCADDPLGPLV-T 122

Query: 198 FLLYSGLRCSDSCRAGVQHLQ----------------NNIFSIKTQKTG-TIITVELPDG 240
             + SGLR  +        +                      +   KT  +   V L   
Sbjct: 123 VAVLSGLRLRELLALQWGDIDWERSEPSVVRSLQRVRGQGLVVVPPKTAASRRRVPLSPL 182

Query: 241 FMKLLAMTPI--------------GKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKS 285
            ++ L                     +  F +     ++  + +  F     +AG+ ++ 
Sbjct: 183 ALEALRRQRRHQVEWRLAAGPTWAEGDWVFTSVRGVPLDPAETTRRFHRLLERAGLPHRR 242

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVVD 344
            H +R  +A++    G     + +  G  TV    + Y++      L  + + R+  +V 
Sbjct: 243 FHDLRHTTASLLLADGVHPKVVASILGHSTVQVTLDVYSRVT--PGLARQAAERLQQLVA 300

Query: 345 S 345
           +
Sbjct: 301 N 301


>gi|20804053|emb|CAD31630.1| HYPOTHETICAL INTEGRASE/RECOMBINASE PROTEIN [Mesorhizobium loti R7A]
          Length = 333

 Score = 83.5 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 44/296 (14%), Positives = 89/296 (30%), Gaps = 46/296 (15%)

Query: 71  LKWLISEYRKS--AHWGSLAVNSRISFESYFDQIIR----KSGDFD----YRKITTKHIR 120
           L  LI  +          ++ N+  S+   F  +      + G        R +    I 
Sbjct: 7   LAVLIERWFTDRLMRHRGVSSNTIASYRDTFRLLFAFAQTRLGRSPSQLTLRDLDAPFIG 66

Query: 121 SGVES----RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC--------LSVERPKRKT 168
           + +E     R  +  +    LT++R  F++A  +E     P         L++   +   
Sbjct: 67  AFLEDLETLRSASVRTRNLRLTAIRSFFRYASFEE-----PAHSAQIHRVLAIPSKRCDK 121

Query: 169 EGIRPWTKEDMQQFKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFS 223
             ++  T+ +++   +        G +          +GLR S+        +   +   
Sbjct: 122 RQLQFLTRPEIEAILACPDRSTWLGRRDHTLLLLAAQTGLRVSEIIDLDRHSVMLGHGAH 181

Query: 224 IK-TQKTGTIITVELPDGFMKLLAMT-----PIGKETFFINNDKQKMNATQFSIWFKAKA 277
           ++   K     +  L     + L          G    F N    K++A           
Sbjct: 182 VRCVGKGRKERSTPLTKVAQQALRGWLNEPRKRGATALFPNMHGSKLSADGVQALLNKYV 241

Query: 278 TKAGVNK--------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
            KA  +         S H +R  +A     AG     +    G + ++   TY   
Sbjct: 242 AKAREHCVTLRSKRVSPHVLRHSAAMELLQAGVDCSVIALWLGHEAMETTLTYLHA 297


>gi|314937138|ref|ZP_07844485.1| toxin-antitoxin system, toxin component, PIN family [Staphylococcus
           hominis subsp. hominis C80]
 gi|313655757|gb|EFS19502.1| toxin-antitoxin system, toxin component, PIN family [Staphylococcus
           hominis subsp. hominis C80]
          Length = 378

 Score = 83.5 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 38/269 (14%), Positives = 83/269 (30%), Gaps = 39/269 (14%)

Query: 101 QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
           +I+++  +   + ITT + +  +                   +F++AV  + +  NP   
Sbjct: 97  KILKEFDNMPIQSITTPYCQKVINYWIENYKDFRNIKVYAANVFEYAVMLKIIHENPFKY 156

Query: 161 VERPKR---KTEGIRPW-TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216
            + PKR   K+     + + ++++QF     +       F  L ++G+R  +      + 
Sbjct: 157 TKLPKRTRNKSNEHLTYYSSDELKQFLELIKDDLMYYAMFRLLGFTGMRRGELMALTWED 216

Query: 217 LQNNIFSIKTQKTGTI----ITVELPDGFMKLLAMTPIGKETF------------FINND 260
           +     +I   KT TI      +  P      + +  I   T                  
Sbjct: 217 INFKNKTISIDKTVTIGLNSKEIIQPPKTHSSIRVISIDDRTISILKNWRVEQRKLCLMH 276

Query: 261 KQKMNATQF-----------------SIWFKAKATKAGVNK-SAHGVRKFSATISADAGA 302
               +                     +        K    K   HG R    ++  +AG 
Sbjct: 277 GHNTSNKSQCLFTNLRTNKRLQVQHPNKAMDKICKKYNFKKIKIHGFRHTHCSLLFEAGL 336

Query: 303 TAHELMATYGWKTVDQA-ETYTKGADRIR 330
           +  E+    G   ++   + Y    ++ R
Sbjct: 337 SIQEVQDRLGHGDINTTMDVYAHITEKQR 365


>gi|296105686|ref|YP_003617386.1| Putative lambdoid prophage Rac integrase [Legionella pneumophila
           2300/99 Alcoy]
 gi|295647587|gb|ADG23434.1| Putative lambdoid prophage Rac integrase [Legionella pneumophila
           2300/99 Alcoy]
          Length = 317

 Score = 83.5 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 46/280 (16%), Positives = 99/280 (35%), Gaps = 31/280 (11%)

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVES 125
             +T+  L+ +Y + A   +L  ++   +    +  +    GD   + +++  IR+ V  
Sbjct: 7   VKSTVGELLKQYMEIAE-KTLEPSTFNGYRKACEAHLYPAFGDIPVKDLSSMMIRNYVTK 65

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINP------CLSVERPKRKTE-GIRPWTKED 178
            + T  +    LT +R     A+    +  NP         V++  R++   + P+ +++
Sbjct: 66  LQLTLKTIRNILTPLRNTLDQALNDGMITSNPLDRLVLSKLVDKKTRRSNWEVDPFNQDE 125

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK-------TGT 231
           ++   S      Q R  F+F  YSGLR S+        +      ++  +        GT
Sbjct: 126 IKAILSEAK--GQARNLFQFAFYSGLRTSELIALEWGDIDWLNGIVRVSRAVVLKKEKGT 183

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI-------WFKAKA-----TK 279
                  D  +   A+  +  +  F   +  ++     +          +         K
Sbjct: 184 KTKSGQRDVLLLPPALEALQNQKKFTFLEGGRVFYNPRTNTPWETDGQIRKTCWAHILKK 243

Query: 280 AGVNKS-AHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           AGV     +  R   A++   AG  +  +    G K  + 
Sbjct: 244 AGVRYRNPYQTRHTYASMMLSAGENSLWVAKQMGHKDTEM 283


>gi|228477797|ref|ZP_04062425.1| site-specific recombinase, phage integrase family [Streptococcus
           salivarius SK126]
 gi|322374163|ref|ZP_08048696.1| site-specific recombinase, phage integrase family [Streptococcus
           sp. C150]
 gi|228250489|gb|EEK09703.1| site-specific recombinase, phage integrase family [Streptococcus
           salivarius SK126]
 gi|321276868|gb|EFX53940.1| site-specific recombinase, phage integrase family [Streptococcus
           sp. C150]
          Length = 377

 Score = 83.5 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 91/278 (32%), Gaps = 45/278 (16%)

Query: 91  SRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP-----------SSAIQFLTS 139
           +     +Y   I     + +  K+T  HI    E  K  P           ++  + L  
Sbjct: 84  TSTQRNNYERHIKPYFKNTNLNKLTYDHIFEFREYLKTKPKKQNENEVLSYNTINKVLIL 143

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS--FWSEGSQPRLAFE 197
           ++ +F   +R+  +  NP  ++ +   +   I+ W+ E+  +F+      E S   L F 
Sbjct: 144 LKKIFDTGIRKSLIDKNPVKNLRKLPIRKPDIKFWSIEEFTRFRGLIRDDEISYD-LFFV 202

Query: 198 FLLYSGLRCSDSCRAGVQHLQ---------------NNIFSIKTQKTGTIIT-VELPDGF 241
              ++G+R  +        +                NN   I T KT +    + +    
Sbjct: 203 IAFFTGMRMGEILALNWNDINLLTNTIYVTKTVYFVNNTSYINTTKTRSGTRNITINQKL 262

Query: 242 MKLL------------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG-VNK-SAH 287
            ++L              T   +E   I +    +        FK    +   + K   H
Sbjct: 263 AEMLIDWKVKQKEKLEEFTKNTEELQIIQSTPISITKNMIDKKFKQILERDKDLKKIRIH 322

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
            +R   A++  + G     +    G  ++    +TY+ 
Sbjct: 323 DLRHSHASLLINQGEDYLVVKERLGHASITTTIDTYSH 360


>gi|224538580|ref|ZP_03679119.1| hypothetical protein BACCELL_03474 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519804|gb|EEF88909.1| hypothetical protein BACCELL_03474 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 397

 Score = 83.5 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 47/272 (17%), Positives = 98/272 (36%), Gaps = 30/272 (11%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVESRKHTPSSAI 134
           +++      L  +++ +  S    +     +  +  +T          ++S+ +  ++  
Sbjct: 114 FKQEVMTSGLKESTKRNHLSTLALLQDFKKNVTFSDLTFEFVSSFEYFLQSKGYHTNTIA 173

Query: 135 QFLTSMRVLFKWAVRQEYVAINP-CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
           + +  ++     A+ +EY+ I        + K    G      E++++ ++    G   +
Sbjct: 174 KHMKHLKRHINVAINKEYMDIQKYAFRKYKIKTVENGHTHLAPEELEKMETLQLTGRYIK 233

Query: 194 -----LAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDGFMKL 244
                 AF F  Y+G+R SD      +++    Q      K+ KTGT + + L       
Sbjct: 234 YQKTLDAFLFCCYAGMRYSDFVNMKPENIVEMHQETWLIYKSIKTGTEVRLPL------- 286

Query: 245 LAMTPIGKETFFINNDK----QKMNATQFSIWFKA---KATKAGVNK--SAHGVRKFSAT 295
             +   GK    +N  +       +    S   K        AG++K  S H  R  +AT
Sbjct: 287 -YLLFNGKGIQILNKYQANLQDFFHLRDNSNVNKELIIITRLAGLSKKVSFHTARHTNAT 345

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           +    G     +    G K+V   + YT   D
Sbjct: 346 LLIYNGVNITTVQKLLGHKSVKTTQIYTNVMD 377


>gi|160886645|ref|ZP_02067648.1| hypothetical protein BACOVA_04657 [Bacteroides ovatus ATCC 8483]
 gi|156107056|gb|EDO08801.1| hypothetical protein BACOVA_04657 [Bacteroides ovatus ATCC 8483]
          Length = 406

 Score = 83.5 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 62/349 (17%), Positives = 119/349 (34%), Gaps = 52/349 (14%)

Query: 24  YFRKGH--GRRIRLPYPHESTFIPAYMSALTGSTPK-------------REYINSPRKKP 68
           Y R     G++  +    E+  +  Y+  ++ +  +             + +I      P
Sbjct: 42  YCRPEDWNGKKNEIKSTRENNRLQEYLRIISEAYEEILKSQGVVSAEMLKSHITQNNIHP 101

Query: 69  TTL----KWLISEYRKSAHWGSLAVNSRIS--FESYFDQIIRKSGDFD-----YRKITTK 117
           TTL    +W     +K +       + R S  ++ Y    I  SG  D       +   K
Sbjct: 102 TTLLQMGEWERERLKKHSEEIDSTSSYRSSMYYQKYLTDYIVSSGKKDICFEEVTEDFGK 161

Query: 118 HIRSGVESRKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
             ++ ++  K+   S     L  +  L   AV +E + +NPC  +E   +     R  ++
Sbjct: 162 SYKAYLKRCKNFGASQTNHCLRWLNRLLYLAVDKEIIRVNPCEELEYETKPEAKHRYISR 221

Query: 177 EDMQQFKS---FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-----FSIKTQK 228
           ++ ++  S   + +     R AF F   +GL   D       H+  N        I  +K
Sbjct: 222 DEFKKILSTPMYDNRLELARRAFIFSCLTGLAYVDIQLLHPHHIGMNAEGRRYIRINRKK 281

Query: 229 TGTIITVELPDGFMKLLAM--TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---- 282
           T     + L     ++L++  T   ++  F   ++  +       WF+    + GV    
Sbjct: 282 TKVEAFIPLHPIAEQILSLYNTADDEQPVFPLPNRDAL-------WFEIH--ELGVIIGK 332

Query: 283 --NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             N S H  R    T    A      +    G   +   + Y +  D  
Sbjct: 333 EDNLSYHQSRHSFGTFLISADIPIESISKMMGHSNIRTTQGYARITDDK 381


>gi|330815077|ref|YP_004358782.1| prophage integrase [Burkholderia gladioli BSR3]
 gi|327367470|gb|AEA58826.1| prophage integrase [Burkholderia gladioli BSR3]
          Length = 323

 Score = 83.5 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 35/210 (16%), Positives = 72/210 (34%), Gaps = 17/210 (8%)

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           R  + ++  + +  ++ +   AV  E++   P     R   K       T    ++  + 
Sbjct: 86  RGASAATVRRVIGVLKAVLNAAVEWEWLDRAPVTRRTRLPEKRIRW--LTPAQAERLLAE 143

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN----NIFSIKTQKTGTIITVELPDGF 241
                     F   L +GLR S+        +              K    ITV L D  
Sbjct: 144 LPTHLAEMARF--SLETGLRRSNVTGLQWSQIDLVRRVAWIHPDQAKARKAITVPLSDVA 201

Query: 242 MKLLAM------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSA 294
           + +L         P  +++ F+    + ++ T  ++ +     +AG+ +   H +R   A
Sbjct: 202 LAVLQRQQGAPRAPGCRDSVFV-YRGRPVHQTS-TLAWHKALERAGIADFRWHDLRHTWA 259

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324
           +     G     L    GW+T++  + Y  
Sbjct: 260 SWHVQRGTPLQVLKELGGWETLEMVQRYAH 289


>gi|229021527|ref|ZP_04178126.1| Phage integrase [Bacillus cereus AH1273]
 gi|229027280|ref|ZP_04183546.1| Phage integrase [Bacillus cereus AH1272]
 gi|229035259|ref|ZP_04189194.1| Phage integrase [Bacillus cereus AH1271]
 gi|228728071|gb|EEL79112.1| Phage integrase [Bacillus cereus AH1271]
 gi|228734016|gb|EEL84744.1| Phage integrase [Bacillus cereus AH1272]
 gi|228739760|gb|EEL90158.1| Phage integrase [Bacillus cereus AH1273]
          Length = 360

 Score = 83.5 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 39/277 (14%), Positives = 83/277 (29%), Gaps = 31/277 (11%)

Query: 85  GSLAVNSRISF----ESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSM 140
            + +  ++  +      +   I    G           I     S+K+  ++  +  T +
Sbjct: 72  KNRSERTKQQYLHDLSHFLRYIKEAIGTIQELSHNDMEIYFYELSKKYAATTLRKKKTVV 131

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEG--IRPWTKEDMQQFKSFWSEGSQ-PRLAFE 197
           +   K+      ++ N    +++   K E    R    E++ Q      + +     AF 
Sbjct: 132 QQFLKYVYDNNGLSDNFSSRLKKVSVKKEELVNRDLYPEEVTQILDELKKSNYFVYTAFF 191

Query: 198 FLLYSGLRCSDSCRAGVQHL------QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251
            L  +GLR  +   A   +L         +  +  +   +       D    L  +  + 
Sbjct: 192 LLTTTGLRIEEIATAKWANLVFHSSLNAYLLRVVGKGNKSREVRIFEDTLDALCHVRSLR 251

Query: 252 KET----------FFINNDKQKMNATQFSIWFKAKATKAGVN--------KSAHGVRKFS 293
           K+T          F    D     A   S     K  +  +          + H  R F 
Sbjct: 252 KQTTKLDASNTSAFLPKADGSNYRADYLSSLVAKKIEETNLTFLRYRQDRITPHTCRHFM 311

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
           A    + G    ++    G +++   E Y +   R +
Sbjct: 312 ANYLMEKGIELKKIRDYLGHESIMTTERYLRERTRRQ 348


>gi|308451988|ref|XP_003088876.1| hypothetical protein CRE_26889 [Caenorhabditis remanei]
 gi|308244595|gb|EFO88547.1| hypothetical protein CRE_26889 [Caenorhabditis remanei]
          Length = 369

 Score = 83.5 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 58/333 (17%), Positives = 115/333 (34%), Gaps = 39/333 (11%)

Query: 20  KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYR 79
           +    +RK +G +              Y+S++T S     Y +    K   L  +  E  
Sbjct: 15  RYRVRYRKPNGAQTDKRGFKTKRDAELYLSSVTVSKATGAYRDPLEGKQ--LVSVFGERW 72

Query: 80  KSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGV-------ESRKHTPS 131
           K+ H  SL  +S+++ E+ +   +    G      I    + + +       ESRK   +
Sbjct: 73  KTGHLTSLKPSSQLTMETAYRLHVEPVWGSRQVASIRPSEVSAWIGKLTTGSESRKALAA 132

Query: 132 SAIQFLT-SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
             ++     + ++  +AV+   +  NP      P ++ +     T + +++  +   +  
Sbjct: 133 QTVRRAAFVLSLVLDYAVQDGLMPANPARGHRLPAKRRKPNVYLTHQQVERLATLSEKPD 192

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ---------------KTGTIITV 235
             R    FL Y+GLR  ++     +HL      I+ +               K+G   TV
Sbjct: 193 LIR----FLAYTGLRWGETAALQRRHLDFKRSRIRVESNVVMVKGEFKTGTPKSGESRTV 248

Query: 236 ELPDGFMKLLAMTPIGKE---TFFINNDKQKMNATQFSIWFKAKATKAGVN------KSA 286
            + D     L     G+      F ++    M       WF      A          + 
Sbjct: 249 PVSDFLELPLRRLVRGRPETAYVFGSDTTPPMRPAADYSWFVTAVKLAMAEDPEFPRITP 308

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQA 319
           H +R  +A+++  AGA    +    G  +    
Sbjct: 309 HDLRHTAASLAVAAGANVKAVQRMLGHTSAAMT 341


>gi|257095506|ref|YP_003169147.1| integrase family protein [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
 gi|257048030|gb|ACV37218.1| integrase family protein [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
          Length = 282

 Score = 83.5 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 36/249 (14%), Positives = 73/249 (29%), Gaps = 13/249 (5%)

Query: 93  ISFESYFDQI--IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQ 150
            + E+Y D +  + K        +  + +++ +         A   +      F++  R+
Sbjct: 20  RAQEAYIDALVGLAKYYHRSPADLRVEEVQAYLLHLIRDKKLAYASVNQASCAFRFLYRR 79

Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210
                     +   K      +  ++E++ +     +   + R        +GLR S+ C
Sbjct: 80  VLGRPEAGFDIPMAKVPQRLPQILSREEVARLIDS-ARTLRGRTLLMTTYAAGLRVSEVC 138

Query: 211 RAGVQHL----QNNIFSIKTQKTGTIITVELPDGFMKLLA---MTPIGKETFFINNDK-Q 262
              V  +          ++  K G      L    +  L         +   F N     
Sbjct: 139 ALQVGDIESAADRMCLKVRQGKGGKDRYTLLSPHLLAALRTYWRDTRPRLWLFPNRAGTG 198

Query: 263 KMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
            M        + A    AG+      HG+R   AT   +AG   + +    G   +    
Sbjct: 199 PMEIQTAQRIYYAARNAAGIAPEGGIHGLRHAFATHLLEAGVDLYSIGRLLGHGHLSTTS 258

Query: 321 TYTKGADRI 329
            Y   A   
Sbjct: 259 RYLHLARSK 267


>gi|255527483|ref|ZP_05394353.1| integrase family protein [Clostridium carboxidivorans P7]
 gi|296187567|ref|ZP_06855962.1| phage integrase [Clostridium carboxidivorans P7]
 gi|308390327|ref|YP_003933780.1| phage integrase family protein [Clostridium carboxidivorans P7]
 gi|255508826|gb|EET85196.1| integrase family protein [Clostridium carboxidivorans P7]
 gi|296048089|gb|EFG87528.1| phage integrase [Clostridium carboxidivorans P7]
 gi|308066834|gb|ADO12138.1| phage integrase family protein [Clostridium carboxidivorans P7]
          Length = 278

 Score = 83.5 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 42/268 (15%), Positives = 95/268 (35%), Gaps = 22/268 (8%)

Query: 74  LISEYRKSAHWGSLAVNSRISFE----SYFDQIIRKSGDFDYRKITTK--HIRSGVES-R 126
           ++ E+ K       A N+  S+     +YF       G+   +         +S +E  +
Sbjct: 1   MLDEFEKYLLQEGKAKNTIKSYMLHVGNYFKWFRDSFGEDPLKLYRQNVLEYKSYLEKIK 60

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK--TEGIRPWTKEDMQQFKS 184
           K   ++    L ++     + + +   + +     +  K +         TK+D++ F+ 
Sbjct: 61  KENGNTINAKLAALTKFNDFLIYKNIQSESVLSKKDNIKIQMSYASPATITKQDVEVFRQ 120

Query: 185 FWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELP-- 238
              +    R       L Y+GLR S+     +  +   +    ++  K      V +   
Sbjct: 121 RILQNECNRSYAVVTVLSYAGLRISECLNLKIDDVNLVSKELIVREGKGSKQRIVYINTK 180

Query: 239 --DGFMKLLA-MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSAT 295
             D   + L     +  E  F++N   +++ T  +  F   +       + H +R F  +
Sbjct: 181 IVDAIKEYLKERKKVACEYMFVSNKGNRLDRTVVNKLFNKYSD----KITPHTLRHFYCS 236

Query: 296 ISADAGATAHELMATYGWKTVDQAETYT 323
            + ++G + HE+    G   +     YT
Sbjct: 237 NALESGFSVHEVANQAGHSNIHTTLLYT 264


>gi|218129163|ref|ZP_03457967.1| hypothetical protein BACEGG_00738 [Bacteroides eggerthii DSM 20697]
 gi|217988663|gb|EEC54982.1| hypothetical protein BACEGG_00738 [Bacteroides eggerthii DSM 20697]
          Length = 385

 Score = 83.5 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 49/278 (17%), Positives = 99/278 (35%), Gaps = 30/278 (10%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVESRKH 128
              IS +R+     SL  +++ +  S    +     +  +  +T          ++ + +
Sbjct: 105 SSFISFFRQEVMNSSLKDSTKRNHLSTLMLLQEFKKNITFSDLTFELISSFEYFLQLKGY 164

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINP-CLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
             ++  + +  ++     A+ +EY+ I        + K           E++++ ++   
Sbjct: 165 HTNTIAKHMKHLKRHVNIAINKEYIEIQKYAFRKYKIKTIENKHTHLVPEELERLENLIL 224

Query: 188 EGSQPRL-----AFEFLLYSGLRCSDSCRAGVQHLQN----NIFSIKTQKTGTIITVELP 238
            G   +L     AF F  Y+G+R SD      ++  +         K+ KTGT + + L 
Sbjct: 225 SGRYVKLQKSLDAFLFCCYAGMRYSDFINLSSENFVDINQETWLIYKSVKTGTEVRLPL- 283

Query: 239 DGFMKLLAMTPIGKETFFINNDKQ----KMNATQFSIWFKA---KATKAGVNK--SAHGV 289
                   +   GK    +N  +       +    S   K        AG++K  S H  
Sbjct: 284 -------YLLFSGKGIAILNKYRDNLEDFFHLRDNSNVNKDLIIITRLAGLSKRISFHTA 336

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           R  +AT+    G     +    G K+V   + YT   D
Sbjct: 337 RHTNATLLIYNGINITTVQKLLGHKSVKTTQVYTNVMD 374


>gi|261879768|ref|ZP_06006195.1| integrase [Prevotella bergensis DSM 17361]
 gi|270333565|gb|EFA44351.1| integrase [Prevotella bergensis DSM 17361]
          Length = 407

 Score = 83.5 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 45/257 (17%), Positives = 86/257 (33%), Gaps = 29/257 (11%)

Query: 94  SFESYF-DQIIRKSGDFD--YRKITTKHIRSGVESRKHTPSSAIQF----LTSMRVLFKW 146
               +F + +I K G  D    + T   ++            A       L +++ +  +
Sbjct: 138 VLRRHFAEFLIYKYGKKDIGLAEFTPSVVQDFELYLSTAAGCAYNTSVKKLKALKTVTIY 197

Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ---PRLAFEFLLYSG 203
           A ++ Y+  +P L+  R   +       T E++ +  +   +  +    R  F F  ++G
Sbjct: 198 AQKRGYLLHDPFLN-HRFHLEPVNRGFLTDEEIMKIANKKLDIHRLELVRDVFIFSCFTG 256

Query: 204 LRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDGFMKLLAMTP-----IGKET 254
           L   D       ++           K QKT     V L D    ++A         GK  
Sbjct: 257 LAYIDVSNLTPDNIVTLDDKQWIMTKRQKTNVETNVLLLDIPRSIIAKYSHKTYRDGKLF 316

Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYG 312
             + N K        + + K  A   G+ K  + H  R   AT+S   G     +    G
Sbjct: 317 PILTNQKT-------NAYLKEIADICGIKKNLTFHLARHTFATMSLSKGVPMESVSKMLG 369

Query: 313 WKTVDQAETYTKGADRI 329
              +   + Y +  ++ 
Sbjct: 370 HTNIKTTQIYARITNKK 386


>gi|253571742|ref|ZP_04849148.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251838950|gb|EES67035.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 407

 Score = 83.5 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 53/289 (18%), Positives = 97/289 (33%), Gaps = 39/289 (13%)

Query: 86  SLAVNSRISFESYFDQIIR------KSGDFDYRKITTKHIRSGVESRK----HTPSSAIQ 135
           +    S  S+ + ++ + R         D  +  +T   I+      +     +P + I 
Sbjct: 127 NRTEGSLRSYRNAYNHVERFMREKYNLSDIPFSALTLSFIQDYDSHLRTDCRLSPGTIIN 186

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195
               ++++   AV    +   P    E P R  +  R  T E++Q+  +         L 
Sbjct: 187 LTVQLKIIVGEAVADGIITTYPFTGYE-PVRPKQKRRYLTSEELQRLMTMPLHRPNLYLT 245

Query: 196 FEFLL---YSGLRCSDSCRAGVQHL---QNNIFSIK--TQKTGTIITVELPDG----FMK 243
            +  L   Y+G+  SD      +HL    +  + I+   +KTG    + L D       K
Sbjct: 246 RDLFLFSCYTGIPYSDMRLLSKEHLSLADDGTWWIRSSRRKTGVEFEIPLLDLPLHIMEK 305

Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATIS-ADA 300
                P GK     +N       +  ++  K  A    ++     H  R   AT      
Sbjct: 306 YRDTAPDGKLLPMYSN-------STMNLNLKRIAKLCDIDCPLVFHAGRHTYATEITLGH 358

Query: 301 GATAHELMATYGWKTVDQAETYTK------GADRIRLGIKNSRRISSVV 343
           G     +    G   ++  + Y K       AD   L  + + R S V+
Sbjct: 359 GVPLETVSKMLGHARIETTQIYAKVTDDKINADTRVLNERIAERFSVVI 407


>gi|300775106|ref|ZP_07084968.1| integrase [Chryseobacterium gleum ATCC 35910]
 gi|300505846|gb|EFK36982.1| integrase [Chryseobacterium gleum ATCC 35910]
          Length = 308

 Score = 83.5 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 38/262 (14%), Positives = 91/262 (34%), Gaps = 37/262 (14%)

Query: 106 SGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP- 164
             + D +    + + +G+  +     +    L  ++++ K+  + +++   P   ++ P 
Sbjct: 48  IEEADVQSFVFQKLETGLSHK-----TIKDILIVLKMILKFGAKNKWLQYTP-FDIQFPT 101

Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGSQPR-LAFEFLLYSGLRCSDSCRAGVQHLQ--NNI 221
           +R+   I   TK D ++  ++  E    R L     L +G+R  + C    + +   N I
Sbjct: 102 EREKHNIEVLTKTDQKKIMNYIQEHFTFRNLGVYICLSAGMRIGEVCALTWEDIDTDNGI 161

Query: 222 FSIKTQ---------------------KTGTIIT-VELPDGFMKLLAM--TPIGKETFFI 257
            SI                        KT   I  + +    +++L      + +  F +
Sbjct: 162 ISINRTIQRIYVIEDGTRRTELILDTPKTKNSIREIPISKDLLRILKPFKKIVNQSFFVL 221

Query: 258 NNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTV 316
            ND +      +  ++K    +  +     HG+R   AT   ++      +    G   +
Sbjct: 222 TNDAKPTEPRTYRSYYKNLMKELKMPELKFHGLRHSFATRCIESNCDYKTVSVLLGHSNI 281

Query: 317 DQA-ETYTK-GADRIRLGIKNS 336
                 Y     ++ +  I+  
Sbjct: 282 STTLNLYVHPNMEQKKKAIEQM 303


>gi|195874183|ref|ZP_03080182.1| prophage lambda integrase [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|195630408|gb|EDX49034.1| prophage lambda integrase [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
          Length = 406

 Score = 83.5 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 57/359 (15%), Positives = 118/359 (32%), Gaps = 52/359 (14%)

Query: 9   PFVTKERT-RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY------- 60
           P +  +   R GKI + ++     R       E         A T    +R         
Sbjct: 39  PNLYCKLDKRTGKIYWQYKHPVSGRFHSLGTDEVEAKKVASEANTIIAEQRTRQVLSVND 98

Query: 61  ---INSPRKKPTTLKWLISEYRKSAHWG----SLAVNSRISFESYFDQIIRKSGDFDYRK 113
                  R+   T+   I +Y +          L  NS               G    + 
Sbjct: 99  RLARMKGRRTDITVTEWIDKYIEIQDERLKHRELRPNSYRQKAKPVRLFREHCGMQYLKD 158

Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMRVL----FKWAVRQEYV--AINPCLSVERPKRK 167
           I+   I    ++ K       +    +R++    FK A    +V    NP L+ ++P+ K
Sbjct: 159 ISALDISEITDAVKAEGH--NRMAQVVRMVLIDVFKEAQHNGHVLPGYNPALATKQPRNK 216

Query: 168 TEGIRPWTKEDMQQ-FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226
               R  + E+ +  +++   +    +      + +G R  D C    + + +++  ++ 
Sbjct: 217 VTRQR-LSLEEWKTIYEAAEKQEPYLQCGMLLAIITGQRLGDICNMKFKDIWDDMLHVEQ 275

Query: 227 QKTGTIITVELPDGFMKLLAMTPIG-----------------KETFFINNDKQKMNATQF 269
           +KTG+ + + L D   + L +T                    + T    N   +++ +  
Sbjct: 276 EKTGSRLAIPL-DLKCEALGLTLRDVVSKCRDAVISKYLVHFRHTTSQANRGDQVSTSSL 334

Query: 270 SIWFKAKATKAGVNK------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           +  FK    ++G+        + H  R  S  +  + G    +L    G K+    + Y
Sbjct: 335 TSTFKKARDRSGLKWDKGSPPTFHEQRSLSERLYREQGVDTQKL---LGHKSRKMTDKY 390


>gi|148358336|ref|YP_001249543.1| putative lambdoid prophage Rac integrase [Legionella pneumophila
           str. Corby]
 gi|148280109|gb|ABQ54197.1| Putative lambdoid prophage Rac integrase [Legionella pneumophila
           str. Corby]
          Length = 359

 Score = 83.5 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 46/280 (16%), Positives = 99/280 (35%), Gaps = 31/280 (11%)

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVES 125
             +T+  L+ +Y + A   +L  ++   +    +  +    GD   + +++  IR+ V  
Sbjct: 49  VKSTVGELLKQYMEIAE-KTLEPSTFNGYRKACEAHLYPAFGDIPVKDLSSMMIRNYVTK 107

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINP------CLSVERPKRKTE-GIRPWTKED 178
            + T  +    LT +R     A+    +  NP         V++  R++   + P+ +++
Sbjct: 108 LQLTLKTIRNILTPLRNTLDQALNDGMITSNPLDRLVLSKLVDKKTRRSNWEVDPFNQDE 167

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK-------TGT 231
           ++   S      Q R  F+F  YSGLR S+        +      ++  +        GT
Sbjct: 168 IKAILSEAK--GQARNLFQFAFYSGLRTSELIALEWGDIDWLNGIVRVSRAVVLKKEKGT 225

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI-------WFKAKA-----TK 279
                  D  +   A+  +  +  F   +  ++     +          +         K
Sbjct: 226 KTKSGQRDVLLLPPALEALQNQKKFTFLEGGRVFYNPRTNTPWETDGQIRKTCWAHILKK 285

Query: 280 AGVNKS-AHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           AGV     +  R   A++   AG  +  +    G K  + 
Sbjct: 286 AGVRYRNPYQTRHTYASMMLSAGENSLWVAKQMGHKDTEM 325


>gi|291544956|emb|CBL18065.1| Site-specific recombinase XerD [Ruminococcus sp. 18P13]
          Length = 441

 Score = 83.5 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 44/284 (15%), Positives = 90/284 (31%), Gaps = 47/284 (16%)

Query: 87  LAVNSRISFESYFDQIIRKSGDF-------DYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
           LA  S  S+  Y  +I     +        +   +  +   +   +   + +S   +  +
Sbjct: 116 LARTSHQSYTRYITRIKNYFDERYPHLLLGNLTALQLQQFYNDKYNSGLSGNSVKHYHAN 175

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199
           +    K+AV+ + + IN    VE PK +      + K++++Q    +  G +  L     
Sbjct: 176 IHKALKYAVKMDMLDINVADKVELPKIQKFEANFYNKDELEQLFEVFK-GDRLELVVHIA 234

Query: 200 LYSGLRCSDSCRAGVQ--HLQNNIFSIK------------------TQKTGTII-TVELP 238
            Y GLR S+         + +    +++                    KT + + T  L 
Sbjct: 235 AYYGLRKSEIIGLKWDSVNFEEKKLTVRRKVSSTYGSGKEMIFVENQLKTESSVRTFPLI 294

Query: 239 DGFMKLLAMTPIGKETF-------FINNDKQKMNATQFSIW---------FKAKATKAGV 282
               ++L      +E +       F       +    F            FK    K  +
Sbjct: 295 PHIEQMLIERKTLEEYYSKLLGKDFDREYDGFVCRDNFGKLITPNFVTSHFKYIIQKNKL 354

Query: 283 NK-SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTK 324
                H +R   A++    G +   +    G  T +  A  Y+ 
Sbjct: 355 KHIRFHDLRHSCASLLLANGVSMKAIQEWLGHSTFNVTANFYSH 398


>gi|166031429|ref|ZP_02234258.1| hypothetical protein DORFOR_01126 [Dorea formicigenerans ATCC
           27755]
 gi|166028834|gb|EDR47591.1| hypothetical protein DORFOR_01126 [Dorea formicigenerans ATCC
           27755]
          Length = 372

 Score = 83.5 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 46/341 (13%), Positives = 107/341 (31%), Gaps = 49/341 (14%)

Query: 24  YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAH 83
           Y + G   RI L     S  +   ++A+      R Y+ +          L  +Y +S  
Sbjct: 23  YDQNGRKHRITLRSNKSSRDLERQVAAMKAQIESRNYVRNTDI-------LFIDYSRS-- 73

Query: 84  WGSL-----AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLT 138
           W ++     + N++  +E+  ++          + +   HI + + + +    +  Q L 
Sbjct: 74  WLNVYKSRRSNNTKRMYENIIEKHFTALNALKLKDVERIHIETLLANAEDKRRTQQQILL 133

Query: 139 SMRVLFKWAVRQEYVAINPCLSV----ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
           +   + K AV  + +A N    +    ++ K K    RP T ++ +       +    + 
Sbjct: 134 TFSAVLKSAVSDKLLAANVADDILRSTDKIKYKPSEKRPLTPDEKKAVFGATYKYDSDQA 193

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK----------------TGTIITVELP 238
               +   GLR  +     +         +   K                +  I T+ +P
Sbjct: 194 YVYLIYGCGLRREECVALTIFDFNFKKREVSISKAYEYITNTPGVKNPKSSNGIRTIPIP 253

Query: 239 DGFMKLLA-----MTPIGKETFFIN-NDKQKMNATQFSIWFKA-------KATKAGVNKS 285
              + ++      +   G+   F+   DK+ +  + +   +K           +  V  +
Sbjct: 254 SKILPVVQSYVESVKHSGRTQLFVTMRDKKPLTKSAYDKMWKRIVESMQAACKEDIVGLT 313

Query: 286 AHGVRKFSATISADA--GATAHELMATYGWKTVDQAETYTK 324
            H  R    +         +   +    G         Y+ 
Sbjct: 314 GHVFRHNYCSSLCYQIPRVSIKRIAQLLGDTEAMVMNVYSH 354


>gi|327404951|ref|YP_004345789.1| integrase family protein [Fluviicola taffensis DSM 16823]
 gi|327320459|gb|AEA44951.1| integrase family protein [Fluviicola taffensis DSM 16823]
          Length = 421

 Score = 83.5 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 84/222 (37%), Gaps = 18/222 (8%)

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF--KSFWSE 188
           ++A +++ +++ +   AV  +++  NP    +      E      ++++     K   +E
Sbjct: 189 NTAHKYIKNLKKIMNMAVGLDWIPSNPFNHFKCSYTNPE-REILNQDELNIIMNKKLHTE 247

Query: 189 GSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVELPDGFM 242
             +  R  F F  Y+G   +D  +   + +          S   QKTGT  +V L    +
Sbjct: 248 RLEEVRDVFIFCCYTGFAYADVYQFEKEAVMKGLDGNLWLSTARQKTGTKESVPLLPIPL 307

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQ---FSIWFKAKATKAGVNK--SAHGVRKFSAT-I 296
           +++A     +E  +     + +       ++ + K      G+NK  ++H  R   AT +
Sbjct: 308 EIIAKY---QEHEYCKKYNKLLPVNSNQRYNSYLKEIVDLCGINKKLTSHIARHTFATTV 364

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338
           +   G     +    G   +   + Y K  ++      N  R
Sbjct: 365 TLANGVPIETVSRMLGHTNIRTTQIYAKVVEQKVSDDMNVLR 406


>gi|325956124|ref|YP_004286734.1| integrase [Lactobacillus acidophilus 30SC]
 gi|325332689|gb|ADZ06597.1| integrase [Lactobacillus acidophilus 30SC]
          Length = 290

 Score = 83.5 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 47/265 (17%), Positives = 93/265 (35%), Gaps = 43/265 (16%)

Query: 100 DQIIRKSGDFDYRKITTKHIRSGVESRK-HTPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158
           + I++  G +   ++T    +   +      P +    +     L  +AVR +Y+  NP 
Sbjct: 10  NHILKDLGSYYIERLTPFKCQRVAQKWALELPKTFNTLIIYSNKLLDYAVRFDYIRKNPM 69

Query: 159 LSVERPKRKTEGIRPWTK----EDMQQFKSFWS-EGSQPRLAFEFLLYSGLRCSDSCRAG 213
             + +PK++ E  + +T     +++  F      E  +    F  L YSG+R  ++    
Sbjct: 70  --IIKPKKQAE-HKEFTDFYTKQELNAFLKASKNENIKIYTFFRLLAYSGMRKGEALALK 126

Query: 214 VQHLQ--NNIFSIK---------------TQKTGTIITVELPDGFMKLLAMTPIGKETFF 256
              +   +N  SI                T KT     + +    M+LL      +  + 
Sbjct: 127 WSDIDFTSNTISINKTVSIGNKHRVVVNNTTKTKRNRAISMDARTMQLLKEWRFQQRRYL 186

Query: 257 INNDKQKMNATQF---------------SIWFKAKATKAGVNK-SAHGVRKFSATISADA 300
           +       +  Q                ++W K    K G+ +   HG R   A++  DA
Sbjct: 187 LQLGFNPFDKEQVVFQNFDNEVVRPNLVAVWNKRICDKNGLRRIKTHGFRHTHASLLFDA 246

Query: 301 GATAHELMATYGWKTVDQA-ETYTK 324
           G    ++    G  ++    + YT 
Sbjct: 247 GVPMEDVKQRLGHASIQTTMDIYTH 271


>gi|323190477|gb|EFZ75751.1| prophage lambda integrase [Escherichia coli RN587/1]
          Length = 372

 Score = 83.5 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 60/355 (16%), Positives = 113/355 (31%), Gaps = 42/355 (11%)

Query: 17  RHGKIIYYFRKG-HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT----- 70
           R G++ Y ++    G+   L          A  +    +  + EY      +  +     
Sbjct: 22  RTGRVYYQYKNPVTGKFHGLGTDKGKAEKIASTANQRIAAAEAEYFMRKIDESPSATKRR 81

Query: 71  ---LKWLISEYRKSAHWG----SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
              LK  +  Y K  +       +A  +          ++ + G+   +++  +     +
Sbjct: 82  GIRLKAWVDRYLKIQNTRLKNGDIAATTHKEKTRMAAYLVSRLGNHPLKELEVRDFALIL 141

Query: 124 ESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAI--NPCLSVERPKRKTEGIRPWTKEDM 179
           +    K   S+A         ++K A     V    NP  +  +P  K    R  T ED 
Sbjct: 142 DEWLDKDMVSTARVNRGLWVDIYKEAQHAGEVPPGWNPPEATRKPIPKVTRAR-LTMEDW 200

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239
           Q+  +   E    R A    + +G R  D C      + N    I   KTG  + + L  
Sbjct: 201 QKIYNATPEKHFIRNAMLLAIVTGQRRDDICHMRFSDVWNEHLHITQGKTGMRLALPLTL 260

Query: 240 G-------FMKLLA-MTPIGKETFFINNDK----QKMNATQFSIWFKAKATKAGV----- 282
                     +++          + I++      + M+    S +F      AG+     
Sbjct: 261 RCDAIGITLKEVIDGCRDRILSPYLIHSRHQKQPKPMSKDNLSDYFAKARDLAGIIPPAG 320

Query: 283 --NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY--TKGADRIRLGI 333
               + H  R  S  +    G     L    G K     + Y  T+G + ++L I
Sbjct: 321 KTPPTFHEQRSLSERLYRAQGIDTKTL---LGHKVQATTDRYNDTRGQEWVKLVI 372


>gi|323152232|gb|EFZ38522.1| prophage CP4-57 integrase [Escherichia coli EPECa14]
          Length = 357

 Score = 83.5 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 47/303 (15%), Positives = 104/303 (34%), Gaps = 25/303 (8%)

Query: 46  AYMSALTGSTPKREYINSPRKKPT-----TLKWLISEYRKSAHWGSLAVNSRISFESYFD 100
            Y + ++  T  +++    R+        T + + + + +     +LA N+        D
Sbjct: 21  EYRTLISAGTDPQDHERQKRETEARRQGNTFENVAAAWYQVKISQNLAPNTIKDIWRSLD 80

Query: 101 -QIIRKSGDFDYRKITTKHIRSGVESRKHTPS--SAIQFLTSMRVLFKWAVRQEYVAINP 157
             +    G+     +T +     +   K   +  +  + L  +  +  +A     +  NP
Sbjct: 81  KYVFPFIGNTPIDTLTARRFVEVLTPIKERGNLETLKRVLQRVNEVMDYAANSGLIDANP 140

Query: 158 CLSVER-----PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRA 212
            ++V +      K+    IRP    ++ Q  S  +   Q RL  E+ L +  R +++   
Sbjct: 141 AMNVRKAFPSPVKKHMPTIRPEQLPELMQALSVSATERQTRLLIEWQLLTVTRPAEASST 200

Query: 213 GVQHLQNNIFSIK----TQKTGTIITVELPDGFMKLLAMTPI---GKETFF--INNDKQK 263
               +  +           K      + L    M +L         +   F  + + +Q 
Sbjct: 201 RWDEINLDAKQWTIPAGRMKMRRDHVIPLSGQAMAVLEAMKPISHHRNYVFPSLKDPQQP 260

Query: 264 MNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET-Y 322
           MN+   +   +     AGV  S HG+R   +T + + G     + A       ++    Y
Sbjct: 261 MNSQTANAALRRMGF-AGVLVS-HGLRAIFSTAANEEGFEPDVIEAALAHVDTNEVRRAY 318

Query: 323 TKG 325
            + 
Sbjct: 319 NRS 321


>gi|294790582|ref|ZP_06755740.1| DNA integration/recombination/inversion protein [Scardovia
           inopinata F0304]
 gi|294458479|gb|EFG26832.1| DNA integration/recombination/inversion protein [Scardovia
           inopinata F0304]
          Length = 320

 Score = 83.5 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 32/278 (11%), Positives = 92/278 (33%), Gaps = 32/278 (11%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT- 129
               I  Y++    G++   +   +     QI     +     +     ++ + +   T 
Sbjct: 22  FAEWIETYKR----GAVTQITLNKYLMTLKQIKLLIPNTKVADLNRIVYQNLLNTYARTH 77

Query: 130 -PSSAIQFLTSMRVLFKWAVRQEYVAINPCLS--VERPKRKTEGIRPWTKEDMQQFKSFW 186
              + + F   ++     A+    +  +P     ++   ++TE I+   + ++++  +  
Sbjct: 78  ERQTVLDFHHQLKAALSDAIEDGLLRKDPTRKAVIKGKAKQTEKIKFLNQAELKKLLNML 137

Query: 187 SEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSIKTQKTGT------------- 231
                  L +  L+   +GLR ++     VQ +      I   KT               
Sbjct: 138 CLDHDHLLDYTILITAKTGLRFAEVLGLTVQDINFKQLVIDVNKTWNYKTKAGGFAPTKN 197

Query: 232 -------IITVELPDGFMKLLAMT-PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
                   I  +L     + +  +    +    +    ++++ +  +   ++   +AG+ 
Sbjct: 198 DSSRRKIHIDWQLALQLKEFIDTSDHCEQSDSLLFIQGKRIHNSTVNSRLESLCIEAGIP 257

Query: 284 K-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
             + HG+R   A++    G +   +    G   +   +
Sbjct: 258 VITFHGLRHTHASLLLYKGVSIASVAKRLGHANMATTQ 295


>gi|227530567|ref|ZP_03960616.1| phage integrase family protein [Lactobacillus vaginalis ATCC 49540]
 gi|227349505|gb|EEJ39796.1| phage integrase family protein [Lactobacillus vaginalis ATCC 49540]
          Length = 376

 Score = 83.5 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 40/298 (13%), Positives = 90/298 (30%), Gaps = 47/298 (15%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK---------ITTKHIR 120
           T + L++EY             R ++ ++                        I+ K   
Sbjct: 67  TFESLLTEYLDD----EKKRVRRSTYYNHMTMKRTLLSILPPDSLVENITALVISQKLEE 122

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG-----IRPWT 175
                RK +     +F   +  +F +AV   Y+  NP   V+   +          +   
Sbjct: 123 LMYGDRKLSSGYVSKFKYFLHSIFDYAVEHSYIKSNPVNDVKINYKSPISGQQIQNKFLE 182

Query: 176 KEDMQQFKSFWSEGSQPRL-AFEFLLYSGLRCSDSCRAGVQHL---QNNI---------- 221
           + +M+    +  + ++     FE+L  +G R  ++       +                 
Sbjct: 183 ESEMKALLDYTYKRNKNYAQLFEWLYLTGSRIGEATALNFDDVYKKDERWFVNIDGTLEY 242

Query: 222 --FSIKTQKT-------GTIITVELPDGFMKLL---AMTPIGKETFFINNDKQKMNATQF 269
               I  QK         +  TV LP+  +K+          ++  F   +   +  +  
Sbjct: 243 NHIKISQQKKSEHTKTASSTRTVILPEKAVKIYFDRKHNHNSRDFIFCTQNGTPIQTSAV 302

Query: 270 SIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTK 324
           + + +       ++K  S+H  R    +  A+ G   + +    G    +   + Y  
Sbjct: 303 NSFLRTAKNNLKIDKPLSSHIFRHTHISKLAELGVPLYVIQKRVGHSNGNITRQIYLH 360


>gi|223928105|gb|ACN23819.1| integrase [Clostridium sp. enrichment culture clone 7-25]
          Length = 263

 Score = 83.5 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 38/245 (15%), Positives = 79/245 (32%), Gaps = 28/245 (11%)

Query: 108 DFDYRKITTKHIRSGVESRKH------TPSSAIQFLTS---MRVLFKWAVRQEYVAINPC 158
           D ++       +R    S          P S     T    +  +F +AV+   +  NPC
Sbjct: 1   DRNFASDQPTDVRKWQNSLTSYRDENGQPYSQTYLKTINNQLTAIFNYAVKYYGLRENPC 60

Query: 159 LSVE-RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217
                  K+K + +  WTK++   F     + +     F  + Y+G+R  +        +
Sbjct: 61  HKAGGMGKKKADEMLFWTKDEFHAFIESMKDRTASYTIFMTMYYTGIREGELLALTPADI 120

Query: 218 QNNIFSIKTQKT----------------GTIITVELPDGFMKLLAMTPIGKETFFINNDK 261
                ++   K+                 +  T+ +PDG    L            ++  
Sbjct: 121 DLEKKTLTVNKSYQRLNGEDVVTSPKTPKSNRTIPIPDGLCACLKEYMSHCYELQPDDRM 180

Query: 262 QKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA- 319
                +      +     +GV +   H +R   A++  + G +   +    G + V    
Sbjct: 181 FPYTKSFLYHEMEHGCKVSGVKRIRVHDIRHSHASLLVEMGFSPLLIAERLGHEKVQTTM 240

Query: 320 ETYTK 324
           +TY+ 
Sbjct: 241 DTYSH 245


>gi|326343224|gb|EGD66991.1| Phage integrase [Escherichia coli O157:H7 str. 1044]
          Length = 382

 Score = 83.5 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 44/314 (14%), Positives = 87/314 (27%), Gaps = 65/314 (20%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHIRSGVE---- 124
           T   L   + K      L  N+    +S    +            I    I +       
Sbjct: 53  TFGELCDIWTKIKE-TELTTNTMKKTKSQLKTLRIIICESTPISHIRYSDILNYRNELLH 111

Query: 125 ------------SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
                        +  T  +   ++  +  L ++A +  +++  P   V++ +R      
Sbjct: 112 GETLYLDNPRSNKKGRTVRTVDNYIALLCSLLRFAYQSGFISTKPFEGVKKLQRNRIKPD 171

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
           P +K +         +G    L  +F +YSGLR  +      + +      +  ++  TI
Sbjct: 172 PLSKTEFNALMES-EKGQSQNLW-KFAVYSGLRHGELAALAWEDVDFEKGVVNVRRNLTI 229

Query: 233 ITVELPDG----------FMKLLAMTP-----IGKE-----TFFINNDKQK--------- 263
           + +  P                L          G       TF+     +          
Sbjct: 230 LDMFGPPKTNAGIRTVTLLQPALEALKEQYKLTGHHRKSEITFYHREYGRTEKQKLHFVF 289

Query: 264 ------------MNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMA 309
                        + +     + A   +AG+ +    H  R   A     AGA    + +
Sbjct: 290 MPRVCNGKQKPYYSVSSLGARWNAAVKRAGIRRRNPYHT-RHTFACWLLTAGANPAFIAS 348

Query: 310 TYGWKTVDQA-ETY 322
             G +T     E Y
Sbjct: 349 QMGHETAQMVYEIY 362


>gi|319654649|ref|ZP_08008730.1| hypothetical protein HMPREF1013_05352 [Bacillus sp. 2_A_57_CT2]
 gi|317393715|gb|EFV74472.1| hypothetical protein HMPREF1013_05352 [Bacillus sp. 2_A_57_CT2]
          Length = 406

 Score = 83.5 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 54/374 (14%), Positives = 117/374 (31%), Gaps = 63/374 (16%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP---TTLKWLISEYRKSAHW 84
           G  ++I      +        +A+             RK P      +WL S Y KS   
Sbjct: 30  GKRQQISRRADTKKEAEKKVTAAIRKLQEDGIDEKKVRKLPFEDVAWEWL-STYAKS--- 85

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTK---HIRSGVESRKHTPSSAIQFLTSMR 141
             +  ++    E     ++R     +  K+T +    I + ++ +++  ++      +  
Sbjct: 86  -KVKSSTVRVREKEIKILLRYIAKVNIDKVTPRMHQKILNDLDDKEYAKTTIEGVHVTAN 144

Query: 142 VLFKWAVRQEYVAINPCLS----VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE 197
           ++FK+A++++    NPC      V++   +    +   +E +++ + F    +  R   E
Sbjct: 145 MIFKYAIKEKMRKDNPCTGSVIPVKKLTVEDIENKTIEEEYLERDELFEFLEAVKRYGLE 204

Query: 198 -------FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT---------GTIITVELPDG- 240
                   L +SG+R  + C      +      I+  KT            +T     G 
Sbjct: 205 FDLERFYLLAFSGMRSGELCALKWSDINWETNEIRITKTLYNPDNNMKKYELTPPKTPGS 264

Query: 241 --------------------------FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274
                                       +L           F   +          +  +
Sbjct: 265 IRTFDIDDDIIDLLKVHKKRQNKIKLANRLKYPDYHDANFIFCRENGYPFIQKNIIVRME 324

Query: 275 AKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAET-YTKGADRIRL 331
               K  + K  + H  R    ++ A+AG     +M   G   +      YT   D+++ 
Sbjct: 325 RILKKTSIEKHATPHIFRHTHISMMAEAGIDLPTIMKRVGHDDMKTTMRVYTHVTDKMKK 384

Query: 332 GIKNSRRISSVVDS 345
               + RI +   +
Sbjct: 385 --NAAERIKNHFSN 396


>gi|221369879|ref|YP_002520975.1| integrase [Rhodobacter sphaeroides KD131]
 gi|221162931|gb|ACM03902.1| integrase [Rhodobacter sphaeroides KD131]
          Length = 332

 Score = 83.5 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 52/314 (16%), Positives = 103/314 (32%), Gaps = 21/314 (6%)

Query: 25  FRKGHGRRIRLPYPHESTFIPAYM-SALTGSTPKREYINSPRKK-----PTTLKWLISEY 78
           +R G      +    E      Y   A T +  + E ++  R++      TT++ L + Y
Sbjct: 4   YRIGRLNGRFVVSWWEDGARRRYRLDARTRAEAEVEALDRIRRETLPAGATTVRDLWAAY 63

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS--SAIQF 136
                   +      +  S  + ++   G     +IT +  RS  ++R+ T S  +    
Sbjct: 64  LADRKGRPVE----RNMRSSGNVVLPHFGALRPDQITPEACRSYTKARRKTVSVGTVWTE 119

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196
           L  +R    WA ++  + + P   +ERP +     R  T  ++ +      E    +LA 
Sbjct: 120 LGHLRTCLLWAAKRGLIQVAP--HIERPAKPAPRDRYLTHAEVSRLMEAECEP-HIKLAI 176

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIK-----TQKTGTIITVELPDGFMKLLAMTPIG 251
             LL +  R           +      I+             TV + +     L      
Sbjct: 177 TVLLTAAARVGAVLELTWDRVDLERGQIRLRVDAEGPRKGRATVPINNTLRAALTSARAA 236

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATY 311
             +  +              + +A +     + + H +R  +A   A+AG    E+    
Sbjct: 237 ALSDHVIEWAGGPVKCIRKGFLRAVSNAGLSDVTLHTLRHTAAVHMAEAGVPMDEISQYL 296

Query: 312 GWKTVD-QAETYTK 324
           G   V   +  Y +
Sbjct: 297 GHSNVQITSSVYAR 310


>gi|300812763|ref|ZP_07093164.1| site-specific recombinase, phage integrase family [Lactobacillus
           delbrueckii subsp. bulgaricus PB2003/044-T3-4]
 gi|313123732|ref|YP_004033991.1| integrase [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|300496256|gb|EFK31377.1| site-specific recombinase, phage integrase family [Lactobacillus
           delbrueckii subsp. bulgaricus PB2003/044-T3-4]
 gi|312280295|gb|ADQ61014.1| Integrase [Lactobacillus delbrueckii subsp. bulgaricus ND02]
          Length = 305

 Score = 83.5 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 39/278 (14%), Positives = 90/278 (32%), Gaps = 35/278 (12%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
               I  Y+     G++   +   +      +   + +     IT    +  + +   T 
Sbjct: 12  FAQWIEVYKD----GAVRERTLDKYWLSHRHLQEIAPNLKLVDITRLEYQQILNTFAQTH 67

Query: 131 SSA--IQFLTSMRVLFKWAVRQEYVAINPCLS--VERPKRKTEGIRPWTKEDMQQFKSFW 186
             A  + F   ++ +   A  + Y+  +P     V+  +   +  +   + +++      
Sbjct: 68  EKATVMDFHHQLKAMLLDAYDEGYIQRDPTRKIVVKGKEPSEKKSKYLNEFELKLLLRHL 127

Query: 187 SEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSIKTQKT--------------- 229
              + P   +  LL   +GLR S++     + +     +I   KT               
Sbjct: 128 DLSTFPNFDWMILLIAKTGLRFSEALGLTKEDIDLEQQTINVDKTWDYKSYTGSFKQTKN 187

Query: 230 -----GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284
                   I  +L     +++   P G+  F     K+  N+T  +   K    +  +  
Sbjct: 188 ASSVRKVPIDWKLAMQLNQVIQDLPNGEPIF---AQKRVFNST-VNNLLKKHCEELNIPV 243

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
            S HG+R   A++   AG +   +    G   +   + 
Sbjct: 244 ISVHGLRHTHASLLLFAGVSIASVARRLGHADMTTTQQ 281


>gi|211927036|dbj|BAG82769.1| site-specific recombinase, phage integrase family [uncultured
           bacterium]
          Length = 345

 Score = 83.5 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 57/301 (18%), Positives = 109/301 (36%), Gaps = 59/301 (19%)

Query: 81  SAHWGSL---------AVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSGVESRKH 128
           S  W +L         + +S+ ++       +    ++G   + K T    R+ +  +  
Sbjct: 21  SDDWYALIDLVTDSVTSAHSKRAYSRALVDFLDWYDENGRPGFSKATVNAYRAYLLQQGK 80

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK-RKTEGIRP---WTKEDMQQFK- 183
           + SS  Q L+++R L   A   + ++      VER K  K EG+R     TKE+ Q+   
Sbjct: 81  SRSSINQALSAIRKLAAEAADNQLMSPTLAAGVERVKGVKQEGVRAGNWLTKEEAQKLIN 140

Query: 184 ---SFWSEGSQPR-------LAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIK--TQKT 229
                W +   PR            ++ +GLR S+      + +  ++  ++I     K 
Sbjct: 141 TPVHRWRQDEIPRTKALRDQAILAVMIGAGLRRSEVAGLQWEQIQQRDGRWAIIDLAGKR 200

Query: 230 GTIITVELPDG----FMKLLAMTPIGKETFF--INNDK---------------QKMNATQ 268
           G + +V LP        +    + +     F  +N D                  ++A  
Sbjct: 201 GRVRSVGLPPWVKVALERWSRASGLNSGRVFRALNKDGSLAGRVRTKGGYRTDGNLSAQA 260

Query: 269 FSIWFKAKATKAGV-------NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
                   AT AG          +AH +R+ +A ++   GA   ++    G  ++   E 
Sbjct: 261 IYNVVSEHATAAGFVDNEGHPTLAAHDLRRTAAALALKGGADLRQIQQMLGHASITTTER 320

Query: 322 Y 322
           Y
Sbjct: 321 Y 321


>gi|146318557|ref|YP_001198269.1| phage integrase family site specific recombinase [Streptococcus
           suis 05ZYH33]
 gi|146320755|ref|YP_001200466.1| phage integrase family site specific recombinase [Streptococcus
           suis 98HAH33]
 gi|145689363|gb|ABP89869.1| site-specific recombinase, phage integrase family [Streptococcus
           suis 05ZYH33]
 gi|145691561|gb|ABP92066.1| site-specific recombinase, phage integrase family [Streptococcus
           suis 98HAH33]
          Length = 403

 Score = 83.5 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 43/279 (15%), Positives = 85/279 (30%), Gaps = 33/279 (11%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQ 135
           Y ++      +V  + +   +    I+  G    + IT +   +        ++ + A  
Sbjct: 91  YLRAYKQKVQSVTYKTALPHH-KLFIQYFGSKPLKAITPRDCEAFRLHIIENYSENYAKN 149

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL- 194
             +  +    +A R  Y++  PC +++ P+ K      WT  + Q F   +       L 
Sbjct: 150 LWSRFKACMGYAERLGYISDMPCKALDNPRGKHPETPFWTYAEFQTFIKSFDLHDYEELQ 209

Query: 195 ---AFEFLLYSGLRCSDSCRAGVQHLQ-----------------NNIFSIKTQKTGT-II 233
              A      +G+R S+      + +                   N +     KT     
Sbjct: 210 RFTAIWLYYMTGVRVSEGLSLCWEDIDFDKKFLKVHTTLEKDENGNWYRKDQTKTPAGER 269

Query: 234 TVELPDG----FMKLLAMTPIGKET-FFINNDKQKMNATQFSIWFKAKATKAGVNK-SAH 287
            +EL D                ++T F I+        +      K KA + GV   +  
Sbjct: 270 LIELDDITIEVLQVWRKNQFANQDTDFIISRFGDPFCKSTICRIIKRKAQQVGVPVITGK 329

Query: 288 GVRKFSATISADAG-ATAHELMATYGWKTVDQA-ETYTK 324
           G+R   A+   +        +    G         TY+ 
Sbjct: 330 GLRHSHASYLINVLKKDILYVARRMGHADKSTTLNTYSH 368


>gi|332160828|ref|YP_004297405.1| Integrase family protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325665058|gb|ADZ41702.1| Integrase family protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 275

 Score = 83.5 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 43/241 (17%), Positives = 86/241 (35%), Gaps = 24/241 (9%)

Query: 103 IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSV 161
            +         +  K    G   ++ +P++  Q L+ +R L + A  + +++A  P   +
Sbjct: 7   RQIWESKRDAALRKKKPIPGYVEKQVSPATRSQHLSFIRSLLRAAADEWKWLAKAPV--I 64

Query: 162 ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN- 220
           +  K ++  IR  TK++     +   E  +P + F     +GLR S+        +    
Sbjct: 65  KTRKPQSRRIRWLTKDEAVTLINCMPENFRPVVVFALA--TGLRRSNILDLEWSQIDMQR 122

Query: 221 ---IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI-------------NNDKQKM 264
                  +  K G  I V L D   K+L         +                 + +KM
Sbjct: 123 KVAWIHPENAKAGKAIGVALNDMSCKVLREQIGRHSRYVFVHTSAWHRADGTKTAEVRKM 182

Query: 265 NATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
                + W +    ++G+ +   H +R   A+    AG     L    GW++++    Y 
Sbjct: 183 RVDDNTAW-RNGLKRSGITDFRFHDLRHTWASWLVQAGVPLSALQEMGGWESIEMVRRYA 241

Query: 324 K 324
            
Sbjct: 242 H 242


>gi|296241818|ref|YP_003649305.1| integrase family protein [Thermosphaera aggregans DSM 11486]
 gi|296094402|gb|ADG90353.1| integrase family protein [Thermosphaera aggregans DSM 11486]
          Length = 339

 Score = 83.5 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 43/260 (16%), Positives = 84/260 (32%), Gaps = 38/260 (14%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR------------KHTPSSAIQ 135
           + ++  +++S     +   GD   +++T + + +    R            K    + + 
Sbjct: 36  SKDTVKAYQSAISDFLDFIGDKPLKEVTLRDVLAWRNERLKSGFPRKKTLDKSRWQATLH 95

Query: 136 FLTS-MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
           + T  ++  F+W   Q        L V   K+ +  I   T E++ +     +     +L
Sbjct: 96  YYTLFLKRFFEWLGLQ--------LRVPSVKKPSSRITVLTDEEVGKLFQ-AARNPLDKL 146

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252
               LL +GLR  +     V  +        +   K G    V   +   KL+       
Sbjct: 147 ILRLLLDTGLRSKEVLNIKVGDIDFDGRTIRVVEGKYGKERYVTASNETFKLIEAW---- 202

Query: 253 ETFFINNDKQK-----MNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAGATA 304
               +NN  +      +         K  A KAG+       H +R   AT +   G + 
Sbjct: 203 --VKLNNLGRDDRLVDLTYGGLYKKLKRLAAKAGIPPEKIRPHVLRHTFATRALRLGISL 260

Query: 305 HELMATYGWKTVDQAETYTK 324
             L    G   +   + Y  
Sbjct: 261 PSLQRLLGHTDIRTTQVYLH 280


>gi|237815093|ref|ZP_04594091.1| Tyrosine recombinase xerC [Brucella abortus str. 2308 A]
 gi|237789930|gb|EEP64140.1| Tyrosine recombinase xerC [Brucella abortus str. 2308 A]
          Length = 313

 Score = 83.5 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 80/239 (33%), Gaps = 12/239 (5%)

Query: 93  ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEY 152
            SF    D+I++ +    + +     I   +  R ++ ++  + + ++  L + A +   
Sbjct: 68  RSFLGEIDEILKGARFSGFDQEMLDSIIGTLRERGNSNATINRKMAALSKLLRKAHKMGD 127

Query: 153 VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY-SGLRCSDSCR 211
           +  N    + R K +   IR   +E+ ++  +      +        L  +G R  ++  
Sbjct: 128 I-FNLPEFI-RQKERVGRIRFLEQEEEKRLFAAIKSRCEDSYRLSVFLVDTGCRLGEAIG 185

Query: 212 AGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI 271
                +Q    +    K+    TV L     K   + P  +    +      +N  +F  
Sbjct: 186 LTWNDIQEQRVTFWVTKSNRSRTVPLTRRARKASHI-PRER----LKGPFSMLNQVRFRQ 240

Query: 272 WFKAKATKAGVNKS----AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            +     + G+        H +R   A+     G     +    G +T+     Y   A
Sbjct: 241 IWNEAKAEVGLGADDQIVPHILRHTCASRLVRGGIDIRRVQMWLGHQTLQMTMRYAHLA 299


>gi|224582816|ref|YP_002636614.1| integrase [Salmonella enterica subsp. enterica serovar Paratyphi C
           strain RKS4594]
 gi|224467343|gb|ACN45173.1| integrase [Salmonella enterica subsp. enterica serovar Paratyphi C
           strain RKS4594]
          Length = 430

 Score = 83.5 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 52/346 (15%), Positives = 108/346 (31%), Gaps = 80/346 (23%)

Query: 75  ISEYRKSAHWGSL-----AVNSRISFESYFDQIIRKSGD--------------------F 109
           I+    +  W  L     + N+   +ES    ++   G+                     
Sbjct: 82  ITVLELTERWSELKRMEISSNTMSRYESIIKNMLPLIGENKMVSAVTTEDLLYVRKELLT 141

Query: 110 DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
            ++ +   H R+ V+ RK   S+   ++  M  +F++     Y   NP   + R K+   
Sbjct: 142 GFQVMKKDH-RTQVKGRKS--STVNNYMMLMAEIFQFGTDNGYAKENPFSGINRLKKAKG 198

Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229
              P T ++  +F   +    Q R  +   +Y+G+R  + C    + +  +  +I  ++ 
Sbjct: 199 EPDPLTTDEFIRFIQAYG-HQQMRNLWSLAVYTGMRHGELCGLAWEDIDLHAGTIIVKRN 257

Query: 230 --------------GTIITV----ELPDGFMKLLAMTPIGKE------------------ 253
                         GT   +       D       +T +G++                  
Sbjct: 258 LTQTDEFTLPKTDAGTDRVIYLIQPAIDALRNQAQLTRLGRQFEVEVKLREYGQSVIQPC 317

Query: 254 TFFIN--------NDKQKMNATQFSIWFKAKATKAGVNKS-AHGVRKFSATISADAGATA 304
           TF  +                   +  +     +AG+    A+  R   A  S  AGA  
Sbjct: 318 TFVFSPQCVKRGPRTGYHYAVNSINKIWAPIIKRAGIRYRNAYQSRHTYACWSLSAGANP 377

Query: 305 HELMATYGWKTVDQA-ETYT-----KGADRIRLGIKNSRRISSVVD 344
           + +    G        + Y      K A+++ L  +   R +  + 
Sbjct: 378 NFIATQMGHTDAQMVYKVYGKWMSEKSAEQVSLLNQALSRYAPSLP 423


>gi|189423359|ref|YP_001950536.1| integrase [Geobacter lovleyi SZ]
 gi|189419618|gb|ACD94016.1| integrase domain protein SAM domain protein [Geobacter lovleyi SZ]
          Length = 362

 Score = 83.5 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 46/302 (15%), Positives = 91/302 (30%), Gaps = 40/302 (13%)

Query: 64  PRKKPTTLKWLISEYR-KSAHWGSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIR 120
           P   P  L+  +  +  +    G    ++  ++ S+ +  +R   +       +T   + 
Sbjct: 21  PDNLPADLEAAVRNWLEREVALGDPREDTIKTYTSHLNHWLRWCNARGITPAAMTQADVE 80

Query: 121 SGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP--KRKTEGIRPWT 175
           S            SS    LT +R  ++ A+ +  VAINP  +V  P  +      +  T
Sbjct: 81  SFRHELIQAGMKASSIAVKLTVIRRFYQVAMNRGLVAINPAANVRPPVAREAKSEQKHLT 140

Query: 176 KEDMQQFKSFWSE-----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT---Q 227
               +             G + R     +L  GLR  +  RA V+ +++    ++     
Sbjct: 141 AGQAELLIMHLPVLGSIKGLRDRAIIALMLLEGLRRVEIKRANVEDIEDVEGGVRILVHG 200

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFI--------------------NNDKQKM-NA 266
           K          D    + A      E                        N   +   + 
Sbjct: 201 KRKDGYIYPREDTVAAIRAYLAARGEVTVEETTIHHRQAFVTPMFLSVRKNGRGRGRISR 260

Query: 267 TQFSIWFKAKATKAGVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
              +       +KAG+ +   S H +R    T+  D       +  T   + +  +  Y 
Sbjct: 261 IGLNSVIDGYLSKAGLKRKRVSCHALRHTCGTMLYDVTKDIRAVQDTLRHEDISTSAIYA 320

Query: 324 KG 325
             
Sbjct: 321 AS 322


>gi|300856412|ref|YP_003781396.1| putative phage-like integrase [Clostridium ljungdahlii DSM 13528]
 gi|300436527|gb|ADK16294.1| predicted phage-related integrase [Clostridium ljungdahlii DSM
           13528]
          Length = 372

 Score = 83.5 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 53/377 (14%), Positives = 131/377 (34%), Gaps = 47/377 (12%)

Query: 7   LPPFVTKERTRHGKIIYYFRKG--HGRRIRLPYPHESTFIPAYMSALTG--STPKREYIN 62
           +P    ++R +   +I    +    G+R++       T   A  + +    +  K E+I 
Sbjct: 1   MPGGHIRKRGKRYNVIVEVERNPVTGKRLQKSIGGFKTKKEAEKALIEAVSNINKNEFIF 60

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRS 121
             +     +K  ++ +  +    +L+  +   ++   +  +I   G+ + +K+   HI+ 
Sbjct: 61  PEKTL---VKDFLTLWLDTYA-INLSPTTYNGYKMIINNHLIPSIGNKELQKLQPLHIQR 116

Query: 122 GVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
               ++ T    + +Q    +R    +A + + ++ NP   V+ PK +           +
Sbjct: 117 YYNEKQKTLKGKTLLQHHRVLRKALNYAWKMQLISRNPADMVDAPKVQKYRAVVLEPPQV 176

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ--KTGTIITV 235
           +   S   E ++  +     L  GLR  +        +   N I +I+    + GT +  
Sbjct: 177 KTLLSAV-ENTRFEIPVNLALALGLRLGEVLGLRWSDIDFENGIINIEQTLVRAGTKLIF 235

Query: 236 ELPDGFMKLLAMTPIG---------------------------KETFFINNDKQKMNATQ 268
           + P       +++                                     ++ Q +N + 
Sbjct: 236 KEPKTEESARSISAPQELLKLLKQHKKNQLELKVRSYGEYENKHNLVCTRDNGQPLNTSS 295

Query: 269 FSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGA 326
           FS  F     K  +     H +R  +AT+   +G       +  G  T+    + Y+   
Sbjct: 296 FSHAFGDFIKKVDIPHIRFHDLRHTNATLMLLSGTAPKVASSRLGHSTIGITMDLYSHVL 355

Query: 327 DRIRLGIKNSRRISSVV 343
               +  + + +++ V+
Sbjct: 356 --KDMNKEAADKLNDVI 370


>gi|253988748|ref|YP_003040104.1| prophage cp4-57 integrase [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|211637927|emb|CAR66555.1| prophage cp4-57 integrase [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253780198|emb|CAQ83359.1| prophage cp4-57 integrase [Photorhabdus asymbiotica]
          Length = 345

 Score = 83.5 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 37/257 (14%), Positives = 86/257 (33%), Gaps = 16/257 (6%)

Query: 85  GSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKHTPS--SAIQFLTSMR 141
            S+  +         ++ +    G+   ++I  + +   +E  K   +  +  + +  + 
Sbjct: 64  KSVTPDYAKDIWRSLEKDVFPAIGEIPVQQIKARTLVEALEPIKARGALETVRRLVQRIN 123

Query: 142 VLFKWAVRQEYVAINPCLSVERP--KRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLAF 196
            +  +AV    + +NP   V     K K + +     E++ +        +     R   
Sbjct: 124 EIMIYAVNTGLIDVNPASGVGMAFEKPKKQNMPTLRPEELPKLMRSLVMSNLSVPTRCLI 183

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIITVELPDGFMKLLAMTP--- 249
           E+ L + +R S++  A    +  +           K      V L    +++L +     
Sbjct: 184 EWKLLTLVRPSEASGARWAEIDLDAKLWTIPAERMKAKREHIVPLSPQALEILDVMKPIS 243

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMA 309
             +E  F + +  K      +     K    G    AHG+R  ++T   +AG     + A
Sbjct: 244 AHREHVFPSRNDPKQAMNSQTANAALKRIGYGGKLVAHGLRSIASTAMNEAGLNPDVIEA 303

Query: 310 TYGWKTVDQAET-YTKG 325
                  ++    Y + 
Sbjct: 304 ALAHSDKNEVRKAYNRS 320


>gi|160700678|ref|YP_001552358.1| gp29 [Mycobacterium phage Giles]
 gi|159136628|gb|ABW88424.1| gp29 [Mycobacterium phage Giles]
 gi|302749835|gb|ADL66924.1| Int [Cloning vector pGH1000A::zeo-ID]
          Length = 397

 Score = 83.5 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 47/331 (14%), Positives = 102/331 (30%), Gaps = 50/331 (15%)

Query: 46  AYMSALTGSTPKREYINSPRKKPTTLKWLISEY-RKSAHWGSLAVNSRISFESYFDQIIR 104
           A  + +  +  + +     R    T+   +  +   +      A +++  + +   Q + 
Sbjct: 45  AVRAKMREAIDRLDADAPVRDAAVTVADWMRRWCTTTLLVSGRADSTKSLYGTLSRQYVE 104

Query: 105 K--SGDFDYRKITTKHIRSGVES--------RKHTP------SSAIQFLTSMRVLFKWAV 148
               G     ++ T  + + V          R  TP      S+     T +R     AV
Sbjct: 105 PAPFGAIRLDRLRTSDVEALVLRLQQATRPGRDGTPVRAVADSTIRSTYTVLRQALDGAV 164

Query: 149 RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD 208
           R   +A NP  +++RP      +R      +    +  + GS+   A   +  +GLR  +
Sbjct: 165 RDGLMARNPAAAMKRPGLSRPEVRRINDAQLADLLA-ATAGSRYHRALLLIAATGLRAGE 223

Query: 209 SCRAGVQHLQNNIFSIKTQKT----------------GTIITVELPDGFMKLLAMTPIG- 251
           +       +  +  S++   T                 +  TV L    + +L       
Sbjct: 224 ALALRWDAVDLDAGSLRVVATVGRVERRLRLTTPKTERSRRTVPLTPDMVSMLRRHRADQ 283

Query: 252 -------------KETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATIS 297
                            F +   + ++        +  A + G+     H +R  +A   
Sbjct: 284 LAERLRAANVWEDHGLVFPSAFGRPVDPRNLLRVVEQAAAQVGLEGVGVHTLRHAAAVAM 343

Query: 298 ADAGATAHELMATYGWKTVDQA-ETYTKGAD 327
            +AG     +    G  +V    + Y   +D
Sbjct: 344 LEAGIHIRAVADILGHSSVAVTGDIYGHTSD 374


>gi|319440793|ref|ZP_07989949.1| hypothetical protein CvarD4_03408 [Corynebacterium variabile DSM
           44702]
          Length = 405

 Score = 83.5 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 52/374 (13%), Positives = 106/374 (28%), Gaps = 73/374 (19%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT---TLKWLISEYRKSAHW 84
             GRR R+             +A+     K   I      P     +   +  +  +   
Sbjct: 30  PDGRRNRIACTS-----RNRDTAIAKRRAKLMEIEDGTYIPGQKPKVSVWMQHWCDTIAH 84

Query: 85  GSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLT----S 139
            +L      ++ S+    I    G+    K+T   +R      +    S  + +     +
Sbjct: 85  ENLKPRVLQNYRSFLKVHIRPSIGERRLDKLTVDDVRRLHADIRDKGLS-DRMVQEVHAT 143

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-EGSQPRLAFEF 198
           +    K AVR+  +  NPC  ++RP+ + E    +++ + Q   +    +G +    +  
Sbjct: 144 LSKCLKDAVREGVLDKNPCDRMDRPRARMEPRGAFSRVEAQAILTTARGDGPKLYSRWLA 203

Query: 199 LLYSGLRCSDSCRAGVQHLQNNI------------------------------------- 221
            L  G R ++        +  +                                      
Sbjct: 204 ALVLGGRQAELLGLEWDRVDLDRGLADLSWQIQRIPWRHGHGCACGDGVSASRCRHREPD 263

Query: 222 -------------FSIKTQKTGTIITV-----ELPDGFMKLLAMTPIGKE-TFFINNDKQ 262
                              KT   + V      L D   +   ++P       + +   +
Sbjct: 264 VPSWMDLRHAHGGIWFTPPKTSASVRVVPLPSPLVDALREWRDVSPATTLGLVWPDESGK 323

Query: 263 KMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
             N       +K    +AGV   + H  R    T+  ++G +   +    G  T+     
Sbjct: 324 PENPKADGAAWKELCVRAGVRPLTLHSTRHTMVTLLLESGVSPEVIRQLAGHSTILSTRN 383

Query: 322 YTK-GADRIRLGIK 334
           Y   G D  R  + 
Sbjct: 384 YMHLGQDAARDALA 397


>gi|301328247|ref|ZP_07221367.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 78-1]
 gi|300845276|gb|EFK73036.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 78-1]
          Length = 336

 Score = 83.5 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 45/307 (14%), Positives = 100/307 (32%), Gaps = 23/307 (7%)

Query: 26  RKGHGRRIRLPYPHESTFI--PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAH 83
           R   G+RIR  +  ++  +    Y  A       ++     R    TL  L+  + K  H
Sbjct: 28  RGRDGKRIRRKFERKAEAVAFERYTIAYA----SQKEWAGQRADRRTLSELLDIWWK-YH 82

Query: 84  WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK---HIRSGVESRKHTPSSAIQFLTSM 140
             +    ++    ++  + I   GD    +++ +     RS       + ++  + +  +
Sbjct: 83  GQNHEHGTKEF--NHLLKTISGIGDIPVSRMSKRALMDYRSMRLRNGISAATINRDMYRL 140

Query: 141 RVLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199
             +F   ++  E+   +P   +         +    K ++++  +         L     
Sbjct: 141 SGMFTKLIQLDEFSGQHPIHGLPPLAEANPEMTFLEKAEIEKLLNVLD--GDDLLVALLC 198

Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN 259
           L +G R ++        + N   +    K G   TV + +   K +      K       
Sbjct: 199 LSTGGRWTEVATLKPAQITNCRVTFLKTKNGKKRTVPISEELEKKVKEEASAKLF----- 253

Query: 260 DKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
              K++  +F    +        N++ H +R   A+     G     L    G  ++ Q 
Sbjct: 254 ---KVDYEKFCGILRRVKPDIPPNQATHILRHTFASHFMMNGGNIIALQQILGHASIQQT 310

Query: 320 ETYTKGA 326
             Y   A
Sbjct: 311 MAYAHLA 317


>gi|293373254|ref|ZP_06619614.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|292631777|gb|EFF50395.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
          Length = 411

 Score = 83.5 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 45/288 (15%), Positives = 95/288 (32%), Gaps = 37/288 (12%)

Query: 86  SLAVNSRISFESYFDQIIR------KSGDFDYRKITTKHIRSGVESRK----HTPSSAIQ 135
           +   +S   + + +D ++R      K  D  +  +    I       +      P + + 
Sbjct: 131 NRTESSLNGYRNSYDHLVRFLQSQYKLSDIPFAALDRSFIEKFDLHLRTECHLAPGTIVN 190

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----Q 191
               ++ +   A+    +   P +  E P       +  T E++ +  +     S     
Sbjct: 191 LTVRLKTIVGEAIADGIITAFPFVGYE-PTHPQSEQKYLTTEELNRIMTT-PLHSRTLYH 248

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHL---QNNIFSIKTQKTGTIITVELP-DGFM----- 242
            R  F F  Y+G+  SD C    ++L   ++ I+ I++ +  T +  E+P          
Sbjct: 249 VRDLFLFSCYTGIPYSDMCMLTNENLSLAEDGIWWIRSSRKKTGVDFEIPLMELPLHIIE 308

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATIS-AD 299
           K   + P GK     +N       +  + + K  A   G+ +    H  R   AT     
Sbjct: 309 KYRDVAPEGKLLPMYSN-------SSLNHYLKQIAVLCGIERKLVFHVARHTYATEITLS 361

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
            G     +    G   +   + Y K  D       +++ +   +    
Sbjct: 362 HGVPLETVSKMLGHSRIGTTQLYAKVTDNK--IDTDTKALDKKIAERF 407


>gi|224025935|ref|ZP_03644301.1| hypothetical protein BACCOPRO_02681 [Bacteroides coprophilus DSM
           18228]
 gi|224019171|gb|EEF77169.1| hypothetical protein BACCOPRO_02681 [Bacteroides coprophilus DSM
           18228]
          Length = 393

 Score = 83.5 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 41/264 (15%), Positives = 89/264 (33%), Gaps = 36/264 (13%)

Query: 85  GSLAVNSRISFESYFDQIIR-----KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
            S   +++ + ++    +          DF Y  +      + +  R++T ++  + +  
Sbjct: 119 SSRKESTKHNLQTTLALLKDFKRSLTFEDFTYSFLQE--FETYLRKRQYTINTIAKHMKH 176

Query: 140 MRVLFKWAVRQEYVAI-N-PCLSVERPKRKTEGIRPWTKEDMQQFKS-----FWSEGSQP 192
           ++     A+ Q+ +   N P    +  K           E++   ++      WS     
Sbjct: 177 LKTFINEAINQDLMDSSNYPFRKYK-IKMTESKHTFLRPEEISSLENLKLPLRWSHLQHT 235

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGFMKLLAMT 248
             AF F  Y+GLR SD       +L  +         + KTG    + L         + 
Sbjct: 236 LDAFLFCCYTGLRYSDFTHLSSDNLMKDQKQIWLVFTSVKTGVETRLPL--------RLL 287

Query: 249 PIGKETFFINNDKQ----KMNATQFSIWFKAKATKAGV-----NKSAHGVRKFSATISAD 299
             GK    +N  ++         + S+  K       +     + S H  R  +A++   
Sbjct: 288 FQGKALLLLNKYRKDLEFFFRLKKNSLVNKELIRIGKLAQITQHFSFHSARHTNASLLIY 347

Query: 300 AGATAHELMATYGWKTVDQAETYT 323
            GA    +    G +++   + Y+
Sbjct: 348 QGAQITTVQKLLGHRSIKTTQGYS 371


>gi|288922739|ref|ZP_06416910.1| integrase family protein [Frankia sp. EUN1f]
 gi|288345916|gb|EFC80274.1| integrase family protein [Frankia sp. EUN1f]
          Length = 409

 Score = 83.5 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 46/312 (14%), Positives = 98/312 (31%), Gaps = 45/312 (14%)

Query: 49  SALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSG 107
            A+  S  + E          T++   +E+  +    ++A  +   + +Y    ++   G
Sbjct: 43  RAMRDSITQFEEGKRVAPSRRTVEEFTAEWLAAVR-PAVAKGTWAKYRNYLTLYVVPVIG 101

Query: 108 DFDYRKITTKHI--------------RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYV 153
               + +T + +              + G + +   P++      ++      AV+  Y+
Sbjct: 102 PTPLQDLTARRLDLLYGHLLDKGRLRQRGGQGQGLAPATVAVVHQTLSRALGDAVKWGYL 161

Query: 154 AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG 213
             NP     RP+        WT E ++ F        +    +  L+ +G+R        
Sbjct: 162 RRNPAEDAHRPRVGRRAPTVWTPEQVRAFLD-HIRDDRLYAMYLLLVTTGVRRGTLAGLR 220

Query: 214 VQHLQNNIFSIKTQKTGTIIT-------------------VELP-DGFMKLLAMTPIGKE 253
              +   + ++    T  +I                      L  D     +A+    + 
Sbjct: 221 RADVDLELATVSPITTRVVIDGKADDGEQKTVNAYRPLSLDPLTRDALRAYVAVWEENRR 280

Query: 254 TF-------FINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAH 305
           TF       F   D   ++    + WF+  A   G+     H VR   AT +  +G    
Sbjct: 281 TFGHTTDRLFCWPDGTAIHPDTITDWFQGHARAVGLPVIRLHDVRHSYATAALKSGVHPK 340

Query: 306 ELMATYGWKTVD 317
            +    G  +V 
Sbjct: 341 VVSERLGHASVA 352


>gi|238921021|ref|YP_002934536.1| integrase [Edwardsiella ictaluri 93-146]
 gi|238870590|gb|ACR70301.1| integrase [Edwardsiella ictaluri 93-146]
          Length = 400

 Score = 83.5 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 57/302 (18%), Positives = 106/302 (35%), Gaps = 29/302 (9%)

Query: 55  TPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRK 113
           + ++      RK   T       Y K      LA ++R   +S  D+ I    G     +
Sbjct: 83  SAEKRDGKMKRKSERTFYDFTVSYMKH---TRLADSTRAMKQSIIDRDITPVWGRKLLSE 139

Query: 114 ITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT--E 169
           IT   +R   +   R+  P++AIQ    +  +FK+A       +NP   V      T   
Sbjct: 140 ITAPALREYCDRVKRRGAPATAIQVRNIVSAVFKFAALHGDYYLNPAEDVLPASIATFEP 199

Query: 170 GIRPWTKEDMQQFKSFWSE-GSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK- 225
             R    E++  F +     G+ P  +LA + +L + +R S+   A    +  +      
Sbjct: 200 RDRALKPEEIGCFFNQLERTGTLPTIKLAIKLVLLTMVRKSELLNASWSEIDFSTGVWTI 259

Query: 226 ---TQKTGTIITVELPDGFMKLLAMTP--IGKETFFI----NNDKQKMNATQFSIWFKAK 276
                K      V L      +L       G   + +     +  + M+A   +      
Sbjct: 260 ESNRMKGDRDHNVYLSRQAQDILVALKMCAGSSEWVLPSCNQSSHKTMSAATLNRVINLT 319

Query: 277 ATKA---GVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG--ADR 328
             +A   G+     S H +R+ ++T+  +AG  +  +      +       Y K   A++
Sbjct: 320 VKQAQERGIKLASFSVHDMRRTASTLLHEAGFNSDWIEKCLAHEERSIRAVYNKAEYAEQ 379

Query: 329 IR 330
            R
Sbjct: 380 RR 381


>gi|229113526|ref|ZP_04242975.1| Phage integrase [Bacillus cereus Rock1-15]
 gi|229162106|ref|ZP_04290078.1| Phage integrase [Bacillus cereus R309803]
 gi|228621357|gb|EEK78211.1| Phage integrase [Bacillus cereus R309803]
 gi|228669944|gb|EEL25338.1| Phage integrase [Bacillus cereus Rock1-15]
          Length = 351

 Score = 83.5 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 39/277 (14%), Positives = 81/277 (29%), Gaps = 31/277 (11%)

Query: 85  GSLAVNSRISF----ESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSM 140
              +  ++  +      +   I    G           I     S+K+  ++  +  T +
Sbjct: 63  KKRSERTKQQYLHDLSHFLRYIKEAIGTIQELSHNDVEIYFYELSKKYAATTLRKKKTVV 122

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEG--IRPWTKEDMQQFKSFWSEGSQ-PRLAFE 197
           +   K+      ++ N    +++   K E    R    E++ Q      + +     AF 
Sbjct: 123 QQFLKYVYDNNGLSDNFSSRLKKVSVKKEELVNRDLYPEEVTQILDELKKSNYFVYTAFF 182

Query: 198 FLLYSGLRCSDSCRAGVQHL------QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251
            L  +GLR  +   A    L         +  +  +   +       D    L  +  + 
Sbjct: 183 LLTTTGLRIEEIATAKWADLVFHSSLNAYLLRVVGKGNKSREVRIFEDTLDALCHVRSLR 242

Query: 252 KET----------FFINNDKQKMNATQFSIWFKAKATKAGVN--------KSAHGVRKFS 293
           K+T          F    D     A   S     K  +  +          + H  R F 
Sbjct: 243 KQTTKLDASNTSAFLPKADGSNYRADYLSSLVAKKIEETNLTFLRYRQDRITPHTCRHFM 302

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
           A    + G    ++    G +++   E Y +   R +
Sbjct: 303 ANYLMEKGIELKKIRDYLGHESIMTTERYLRERTRRQ 339


>gi|198282466|ref|YP_002218787.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|198282807|ref|YP_002219128.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218665405|ref|YP_002425001.1| site-specific recombinase, phage integrase family
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|218666076|ref|YP_002426784.1| site-specific recombinase, phage integrase family
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|218666400|ref|YP_002425323.1| site-specific recombinase, phage integrase family
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198246987|gb|ACH82580.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|198247328|gb|ACH82921.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218517618|gb|ACK78204.1| site-specific recombinase, phage integrase family
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|218518289|gb|ACK78875.1| site-specific recombinase, phage integrase family
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|218518613|gb|ACK79199.1| site-specific recombinase, phage integrase family
           [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 414

 Score = 83.5 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 44/266 (16%), Positives = 84/266 (31%), Gaps = 28/266 (10%)

Query: 85  GSLAVNSRISFESYFDQIIRKS----GDFDYRKI-TTKHIRSGVESRKHTPSSAIQFLTS 139
             L+  +  +                G  D   I            +  T +S     +S
Sbjct: 133 RGLSPVTIATRCERLGWFFAGLNPPRGTLDAITICDLDAFVELKGQQGWTRASLGSLASS 192

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP----WTKEDMQQFKSF----WSEGSQ 191
           +R  F +A  + + A     ++E P+  T    P    W  ED+Q+             +
Sbjct: 193 LRSFFAFAEARGWCAKGLTATIESPRLYTREGIPEGPGW--EDVQRLLVSTAGDHPVDIR 250

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTP 249
            R     L   GLR  +     ++HL    +   +   K        L     + +    
Sbjct: 251 DRAILMLLALYGLRRGEVAALQLEHLDWDGDKICVVRPKQRIAQRYPLLPSVGEAIVRYL 310

Query: 250 IG------KETFFINNDK--QKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISA 298
                       F+      + ++A   S   +A+  + G+  S   AH +R   A+   
Sbjct: 311 RDVRPQCEHRALFLTIGAPMRPLSAESISHVARARLNQLGLTLSPRGAHCLRHACASHLL 370

Query: 299 DAGATAHELMATYGWKTVDQAETYTK 324
            +G +  ++    G +  + A +YTK
Sbjct: 371 SSGFSLKQIGDHLGHRNANSALSYTK 396


>gi|120435586|ref|YP_861272.1| phage integrase family protein [Gramella forsetii KT0803]
 gi|120435706|ref|YP_861392.1| phage integrase family protein [Gramella forsetii KT0803]
 gi|117577736|emb|CAL66205.1| phage integrase family protein [Gramella forsetii KT0803]
 gi|117577856|emb|CAL66325.1| phage integrase family protein [Gramella forsetii KT0803]
          Length = 337

 Score = 83.5 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 49/305 (16%), Positives = 90/305 (29%), Gaps = 41/305 (13%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR--------KSGDFDYRKITTKHIRSG 122
           +   I  Y         +VN+  ++   F  ++         K       KI  + I   
Sbjct: 10  ISDFIIRYL--PDERGASVNTITAYRDTFVLLLDFIEKEKLLKVEKLTLAKIKKETIIEF 67

Query: 123 VE----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV---ERPKRKTEGIRPWT 175
           ++     RK + S+    L ++   +++   +    ++ C  V      K + E I   +
Sbjct: 68  LDWIQKERKCSDSTRNMRLAAIHSFYRYLQYENLDNLHECQKVLSIRSKKTRKESITYLS 127

Query: 176 KEDM----QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTG 230
            E +    QQ  +  + G +          +G R  +        L+      IK    G
Sbjct: 128 IEGIRLLLQQPDTTTTRGRRDLALLSLTYDTGARVQEIIDLTPSRLRLGKPPVIKIIGKG 187

Query: 231 TIIT-VELPDG--------FMKLLAMTPIGKET-FFINNDKQKMNATQFSIWFKAKATKA 280
             +  V + D           +     P       F N+ K+K      +         A
Sbjct: 188 NRVRLVPMLDAQIIHLKNYMEEHRLDQPTANIHPLFFNSRKEKFTRAGINHILHKYMDMA 247

Query: 281 GV--------NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR-IRL 331
                       S H  R   A     AG     +    G  +V   E Y +   R  R 
Sbjct: 248 RKADNTLIPDKASCHSFRHSKAMHLLQAGVNLVYIRDILGHVSVQTTEIYARADSRQKRK 307

Query: 332 GIKNS 336
            ++N+
Sbjct: 308 ALENA 312


>gi|154496658|ref|ZP_02035354.1| hypothetical protein BACCAP_00950 [Bacteroides capillosus ATCC
           29799]
 gi|150273910|gb|EDN01010.1| hypothetical protein BACCAP_00950 [Bacteroides capillosus ATCC
           29799]
          Length = 358

 Score = 83.5 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 54/336 (16%), Positives = 106/336 (31%), Gaps = 58/336 (17%)

Query: 40  ESTFIPAYMSALTGSTPKREYINSPRKKPT-----------------TLKWLISEYRKSA 82
            + ++ A+    TG   ++     P K+                   T +  +  Y K  
Sbjct: 10  GTWYVMAWYRDWTGERKQKCKRGFPTKREAQDWERSFQMQTAADMDMTFEAFVELYTKDV 69

Query: 83  HWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESR------KHTPSSAIQ 135
               L  N+ ++ E+    +I+   G     +ITTK + +           +  P S   
Sbjct: 70  R-PRLKENTWLTKENIIQKKILPYFGKRKISEITTKDVIAWQNELLAYRDEQRKPYSQTY 128

Query: 136 FLTS---MRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
             T    +  +F  AVR   +  NP          + + +  WTK + Q+F     +   
Sbjct: 129 LKTLHNQLSAIFNHAVRFYELRSNPAAKAGNMGTEERKEMLFWTKAEYQRFAEAMMDKPL 188

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK----------------TGTIITV 235
              AFE L + G+R  +               +K  K                  +  T+
Sbjct: 189 SYYAFEMLYWCGIREGELLALTPADFDFEAGMVKISKSYQRLHGEDVITTPKTKKSNRTI 248

Query: 236 ELPDGFMKLLAM------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHG 288
           ++P+     +            K+  F       +  +         A +AGV +   H 
Sbjct: 249 KMPNFLCDEMRDYLGMLYGVKKKDRIFT------VTKSYLHHEMDRGAKEAGVKRIRIHD 302

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +R    ++  D G +A  +    G ++++    Y  
Sbjct: 303 LRHSHISLLIDMGFSAVAIADRVGHESIEITYRYAH 338


>gi|223041236|ref|ZP_03611485.1| hydrogenase expression/formation protein [Campylobacter rectus
           RM3267]
 gi|222877495|gb|EEF12627.1| hydrogenase expression/formation protein [Campylobacter rectus
           RM3267]
          Length = 354

 Score = 83.5 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 29/194 (14%), Positives = 76/194 (39%), Gaps = 18/194 (9%)

Query: 166 RKTEGIRPWTKEDMQQFKS------FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN 219
           R  +     +++++++F        F S  ++ +L  + ++++G+R S++     + +  
Sbjct: 160 RGQKLPEFMSEDEVKRFLEAIENADFKSNANRNKLIIKIIIFTGIRVSEALSLKRKDIAE 219

Query: 220 N----IFSIKTQKTGTIITVELPDGFMKLLAMTPI----GKETFFINNDKQKMNATQFSI 271
           +    +  I+ +     + +         L    I     +   FIN    ++     S 
Sbjct: 220 DGELYVIRIRGKGNKYRVVMIKRRLIEAHLDAIAINYINKEGYLFINKKGTRLTQAYVSR 279

Query: 272 WFKAKATKAGVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GAD 327
             +    KAG+ K    AH +R   AT+          +    G  +++ +  YT   ++
Sbjct: 280 IVEQILFKAGIRKEKNGAHMLRHTFATMLYKKQKDLVLVQEVLGHASLNTSRIYTHFDSE 339

Query: 328 RIRLGIKNSRRISS 341
           +++L  + +  +S 
Sbjct: 340 KLKLAAQVAEELSG 353


>gi|194439346|ref|ZP_03071424.1| integrase [Escherichia coli 101-1]
 gi|194421708|gb|EDX37717.1| integrase [Escherichia coli 101-1]
 gi|323978493|gb|EGB73576.1| phage integrase [Escherichia coli TW10509]
          Length = 329

 Score = 83.5 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 83/232 (35%), Gaps = 14/232 (6%)

Query: 99  FDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKW-AVRQEYVA 154
             +II++  D    +I  + + +   SR       S+  +  + +  +F   A   E+  
Sbjct: 86  LKKIIKEMNDPRVSQINARFMAAYRSSRLSLGVKESTVRRDESDLGGMFTLLANAGEFHG 145

Query: 155 INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGV 214
            NP  ++   KRK+  +   T E++ +     S     R      L +G R  ++     
Sbjct: 146 ENPLRALPSLKRKSPEMTYLTTEEIAKLLDAVS--GDARRITLLCLSTGARWGEAKNLRA 203

Query: 215 QHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274
           +H+ NN  +    K G +  + + D  +  +     G     + +    +N  ++    +
Sbjct: 204 EHIINNRVTFNKTKNGKVRIIPVSDEVVSEIKTKKSG----LLFD----VNYEEYRKVLR 255

Query: 275 AKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           +        ++ H +R   A      G     L    G  T+ Q  TY   A
Sbjct: 256 SVKPDLPKGQAVHVLRHTFAAHFMINGGNILTLQRIMGHATIQQTMTYAHLA 307


>gi|317501727|ref|ZP_07959915.1| integrase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|316896875|gb|EFV18958.1| integrase [Lachnospiraceae bacterium 8_1_57FAA]
          Length = 300

 Score = 83.5 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 52/298 (17%), Positives = 89/298 (29%), Gaps = 53/298 (17%)

Query: 87  LAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMRV 142
           +  +++   E     +   K G      I     R      K      ++      S++ 
Sbjct: 1   MKKSTQKQREQLMRLLKEDKLGARSIDTIKPSDAREWALRMKDKGFSYNTINNHKRSLKA 60

Query: 143 LFKWAVRQEYVAINPC--LSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE--- 197
            F  A++ + V  NP      E  +  T+     T+E  Q   SF    +     ++   
Sbjct: 61  SFYIAIQDDCVRKNPFDFKLSEVLENDTKEKVALTEEQEQSLLSFIKTDNVYHKYYDDVL 120

Query: 198 FLLYSGLRCSDSCRAGVQHLQ----------------NNIFSIKTQKTGTIIT-VELPDG 240
            LL +GLR S+ C   +  +                    + I+T KT + I  V L   
Sbjct: 121 ILLKTGLRISELCGLTIMDVDFIHEVVVIDHQLLKSKEQGYYIETPKTKSGIRQVPLSRE 180

Query: 241 -----------FMKLLAMTPIGKETF-FINNDKQKMNATQFSIWFKAKATKAGVNK---- 284
                        K       G+  F F+N+  +   A  +S  F     K   +     
Sbjct: 181 TIQAFQRVMKKRSKAEPFVIDGRSNFLFVNHKGKPKVAIDYSTLFVRMVKKYNKHHKDNP 240

Query: 285 ----SAHGVRKFSATISADAGATAHELMATYGWKTVD-------QAETYTKGADRIRL 331
               + H +R    T  A       +L    G   +         A   T  ++  RL
Sbjct: 241 LPHITPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISITMNWYAHASIDTAKSEVQRL 298


>gi|225627141|ref|ZP_03785179.1| Tyrosine recombinase xerC [Brucella ceti str. Cudo]
 gi|225617976|gb|EEH15020.1| Tyrosine recombinase xerC [Brucella ceti str. Cudo]
          Length = 313

 Score = 83.5 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 80/239 (33%), Gaps = 12/239 (5%)

Query: 93  ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEY 152
            SF    D+I++ +    + +     I   +  R ++ ++  + + ++  L + A +   
Sbjct: 68  RSFLGEIDEILKGARFSGFDQEMLDSIIGTLRERGNSNATINRKMAALSKLLRKAHKMGD 127

Query: 153 VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY-SGLRCSDSCR 211
           +  N    + R K +   IR   +E+ ++  +      +        L  +G R  ++  
Sbjct: 128 I-FNLPEFI-RQKERVGRIRFLEQEEEKRLFAAIKSRCEDSYRLSVFLVDTGCRLGEAIG 185

Query: 212 AGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI 271
                +Q    +    K+    TV L     K   + P  +    +      +N  +F  
Sbjct: 186 LTWNDIQEQRVTFWVTKSNRSRTVPLTRRARKASHI-PRER----LKGPFSMLNQVRFRQ 240

Query: 272 WFKAKATKAGVNKS----AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            +     + G+        H +R   A+     G     +    G +T+     Y   A
Sbjct: 241 IWNEAKAEVGLGADDQIVPHILRHTCASRLVRGGIDIRRVQMWLGHQTLQMTMRYAHLA 299


>gi|225575277|ref|ZP_03783887.1| hypothetical protein RUMHYD_03366 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037570|gb|EEG47816.1| hypothetical protein RUMHYD_03366 [Blautia hydrogenotrophica DSM
           10507]
          Length = 405

 Score = 83.5 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 46/311 (14%), Positives = 103/311 (33%), Gaps = 48/311 (15%)

Query: 59  EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR--KSGDFDYRKITT 116
           E I   + +  +      ++++      ++ N+   ++S + +     K    D RKI  
Sbjct: 80  ENIEKAKTEDYSFHSYFQKWKEKQVSYGVSNNTLTKYDSDYKRYFENSKFEKLDIRKINE 139

Query: 117 KHI----RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE---------R 163
           + I       ++       +    +  +  +FK A  +  ++ NPC  VE         R
Sbjct: 140 EDITAFVIQQIKKLNLKEKAGKSLMGYINGVFKHARIKRIISENPCEYVETRNFSKFFNR 199

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL------AFEFLLYSGLRCSDSCRAGVQHL 217
            K+  E  R     D+             +       A E  +Y+G+R  +      +++
Sbjct: 200 DKKNPEE-RTINTNDLNLLLKQLYISQTQKPHYIPNYAVELAIYTGMRIGEITALRWENI 258

Query: 218 QNNIFSIK-----------------TQKTGTIITVELPDGFMKLLAMTPIG-------KE 253
           + ++  I                  + KT       +      LL              E
Sbjct: 259 REDLGVIVICCSEKHDRITKEYIVDSTKTRKERQFPITQKISSLLYKVKKIEMQYGFLGE 318

Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYG 312
             F N + + ++++  +   + +  +AG+  KS   +R+   +    AG ++    +  G
Sbjct: 319 YIFQNENGK-LHSSSIAHCIRYRCIQAGIPEKSIQSLRRTLNSKLRCAGVSSIVAASMLG 377

Query: 313 WKTVDQAETYT 323
                 A  Y+
Sbjct: 378 HTEEVNALNYS 388


>gi|323977022|gb|EGB72109.1| phage integrase [Escherichia coli TW10509]
          Length = 392

 Score = 83.5 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 44/314 (14%), Positives = 87/314 (27%), Gaps = 65/314 (20%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHIRSGVE---- 124
           T   L   + K      L  N+    +S    +            I    I +       
Sbjct: 63  TFGELCDIWTKIKE-TELTTNTMKKTKSQLKTLRIIICESTPISHIRYSDILNYRNELLH 121

Query: 125 ------------SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
                        +  T  +   ++  +  L ++A +  +++  P   V++ +R      
Sbjct: 122 GETLYLDNPRSNKKGRTVRTVDNYIALLCSLLRFAYQSGFISTKPFEGVKKLQRNRIKPD 181

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
           P +K +         +G    L  +F +YSGLR  +      + +      +  ++  TI
Sbjct: 182 PLSKTEFNALMES-EKGQSQNLW-KFAVYSGLRHGELAALAWEDVDLEKGIVNVRRNLTI 239

Query: 233 ITVELPDG----------FMKLLAMTP-----IGKE-----TFFINNDKQK--------- 263
           + +  P                L          G       TF+     +          
Sbjct: 240 LDMFGPPKTNAGIRTVTLLQPALEALKEQYKLTGHHRKSEITFYHREYGRTEKQKLHFVF 299

Query: 264 ------------MNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMA 309
                        + +     + A   +AG+ +    H  R   A     AGA    + +
Sbjct: 300 MPRVCNGKQKPYYSVSSLGARWNAAVKRAGIRRRNPYHT-RHTFACWLLTAGANPAFIAS 358

Query: 310 TYGWKTVDQA-ETY 322
             G +T     E Y
Sbjct: 359 QMGHETAQMVYEIY 372


>gi|157161464|ref|YP_001458782.1| phage integrase family protein [Escherichia coli HS]
 gi|157067144|gb|ABV06399.1| phage integrase family domain protein [Escherichia coli HS]
          Length = 200

 Score = 83.5 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 28/186 (15%), Positives = 58/186 (31%), Gaps = 14/186 (7%)

Query: 149 RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD 208
           ++ YV  NPC+ V++   K +  R  T E+     +  +     + A E       R SD
Sbjct: 10  QRGYVPGNPCVGVDKFP-KPQRDRYITDEEYIAIFTHATPA--VKAAMEIAYLCAARVSD 66

Query: 209 SCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL--LAMTPIGKETFFINNDKQKMNA 266
             +     + +    I+  KTG        +       +                ++ + 
Sbjct: 67  VLKMNWNQILDKGIFIQQGKTGIKQIKAWTERLSAAVDICREWGQDGPVIRTMYGERYSY 126

Query: 267 TQFSIWFKAKATKAG------VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
             F+  ++     A       ++ + H + K       +   +  +     G KT  Q  
Sbjct: 127 KGFNEAWRKARNAASEELGRPLDCTFHDL-KAKGISDYE--GSGRDKQKFSGHKTESQVL 183

Query: 321 TYTKGA 326
            Y +  
Sbjct: 184 VYDRKV 189


>gi|322410893|gb|EFY01801.1| Integrase [Streptococcus dysgalactiae subsp. dysgalactiae ATCC
           27957]
          Length = 381

 Score = 83.5 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 36/284 (12%), Positives = 94/284 (33%), Gaps = 39/284 (13%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132
           L   + KS    ++   +  S +    + I+   G+    KIT   ++       HT  +
Sbjct: 73  LAELWLKSYQ-LTVKPQTYESTKLLLKNHILPVFGNMKLEKITPSFVQQFANKLAHTLVN 131

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSV---ERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
                +  R + ++AV  + +  NP   +   ++ K+  + ++    ++++    +    
Sbjct: 132 FKVACSINRRILQYAVLLQLIPYNPAREIIIPKKQKKSADRVKFINPQNLKALLDYMETL 191

Query: 190 SQPR-------LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------------- 229
           +  +       + + FLL +G R  ++       +     ++   KT             
Sbjct: 192 APTKYQYYYDNVLYRFLLATGCRFGEAVALEWSDIDLEAGTVSISKTYNRQINQISTPKT 251

Query: 230 -GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM------------NATQFSIWFKAK 276
                 + + +  + LL      +   F+    +              ++   S     +
Sbjct: 252 KSGKRIISIDNKLVLLLKQYRNRQRLIFLEIGARAPKVIFASPTLTYASSDVRSKALAHR 311

Query: 277 ATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
             +  + + + H  R   A++  +AG +  EL    G   +   
Sbjct: 312 CKEVDIPRFTFHAFRHTHASLLLNAGISYKELQHRLGHSNIKMT 355


>gi|307295097|ref|ZP_07574939.1| integrase family protein [Sphingobium chlorophenolicum L-1]
 gi|306879571|gb|EFN10789.1| integrase family protein [Sphingobium chlorophenolicum L-1]
          Length = 298

 Score = 83.5 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 41/282 (14%), Positives = 90/282 (31%), Gaps = 34/282 (12%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD--------YRKITTKHIRSG 122
             L  ++R+        +V++  ++ +  ++++    +             I    +R+ 
Sbjct: 5   GDLCEQWRRHLALDRRRSVHTVRAYVATAERLVAFLEEHRGEAVTAAMLAGIEQADLRAF 64

Query: 123 VESRK---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
           +  R+       SA + L+++R   ++   ++  A  P L  + P+ K    RP + ++ 
Sbjct: 65  LTVRRMDGIGNVSAARELSAVRGFLRFVGGED--ARVPML--KGPRVKRGLPRPVSPDEA 120

Query: 180 --------QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
                   +  +  W  G++       L  +GLR  ++       L        T K G 
Sbjct: 121 VALAGDIAETAREEW-IGARDWAVLLLLYGAGLRIGEAMGLTGAVLPLGETLRVTGKRGK 179

Query: 232 IITVELPDGFMKLLAM-------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-- 282
              V L       +                 F       ++        +    + G+  
Sbjct: 180 TRIVPLLPQVRSAIDAYVALCPFGAERDAPLFRGARGGPLSPALIRRAVQGARGRLGLSD 239

Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             + H +R   AT     GA    L    G  ++   + YT 
Sbjct: 240 RTTPHALRHSFATHLLGRGADLRSLQELLGHASLSSTQIYTH 281


>gi|302039265|ref|YP_003799587.1| putative phage integrase [Candidatus Nitrospira defluvii]
 gi|300607329|emb|CBK43662.1| putative Phage integrase [Candidatus Nitrospira defluvii]
          Length = 391

 Score = 83.5 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 45/286 (15%), Positives = 93/286 (32%), Gaps = 26/286 (9%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKH 128
           T    + +Y    +  +LA   R    +     ++   G    + +  +   + +  R+ 
Sbjct: 63  TFAQFVPKYLDRLNGKALAALDRP--RTILTRHLVPFFGIRPLQSMKLEDGVAYIAHRRA 120

Query: 129 TPSS---AIQFLTSMRVLFKWAVRQEYVAIN--PCLSVERPKRKTEGIRPWTKEDMQQFK 183
             ++     +    +  L  +AV  E +  N    L +    ++T   +PW     + ++
Sbjct: 121 EMAADGTIRRECGVLLGLLNYAVANEDLDKNRLLALDLPAGAQRTRVAKPW-----ELYR 175

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL---QNNIFSIKTQK---TGTIITVEL 237
            +       +      L +GLR +       + +    +  + I  Q          + L
Sbjct: 176 IYHLSAPAIQRMMMLALLTGLREAKIIAIDQEWIIEPADGEWLIPVQGSRLKRVPEELPL 235

Query: 238 PDGFMKLLAMT-PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSAT 295
                  L  T P     FF     Q  +A  F   +     +AGV +   H +R  +AT
Sbjct: 236 SPLAASFLRGTLPRIGGRFF----SQWRDAGSFKHRWAEACARAGVQDLHFHDLRHTAAT 291

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKG-ADRIRLGIKNSRRIS 340
              +AG          G +     E Y      ++R+ +     I+
Sbjct: 292 WLCEAGVEYATTEKLLGHRLPGMGELYMHNWKPKLRMAVTTLEAIA 337


>gi|268609808|ref|ZP_06143535.1| hypothetical protein RflaF_09962 [Ruminococcus flavefaciens FD-1]
          Length = 454

 Score = 83.5 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 43/350 (12%), Positives = 91/350 (26%), Gaps = 58/350 (16%)

Query: 26  RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW------------ 73
               G  IR       +F+   + A          + S  K P                 
Sbjct: 32  WVSTGYEIRGNKKAAKSFLDELLVAYNKKQQAALKVISKMKHPEQFIKEQSRIMALPLFL 91

Query: 74  LISEYRKSAHWGSLAVNSRISFESY----FDQIIRKSGDF--DYRKITTKHIRSGVESRK 127
            I E+   +    L   +   +               G    D          + +  + 
Sbjct: 92  YIEEWIDHSSVK-LQPTTIDGYRQLCGGRIRTFFESRGTTVYDLTGEDLNEFYAYLAKQG 150

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              +S  ++   +   + + ++ +Y+  NPC   +RPK +      + + ++ +      
Sbjct: 151 LKGASQQRYHGLIHSAYSFLMKHQYIDSNPCDFADRPKAEKYRGAYYNQSELTELFRAAK 210

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--------------------TQ 227
           E S+  +      Y GLR S+       ++     +I+                      
Sbjct: 211 E-SEIYIPVLLAAYYGLRRSEVLGIKWSNIDFGNGTIRIAHKVVEQKVDGKYRTVGHDKM 269

Query: 228 KTGTIITV-ELPDGFMKLLAMTPIG----------------KETFFINNDKQKMNATQFS 270
           KT +   +  L       L    +                  +   +N   Q +     +
Sbjct: 270 KTESSNRILPLMKEVAMALRRLKLHQDEQRRLCGNSYVHEYDDYVCVNEIGQLLRPNYVT 329

Query: 271 IWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
             F     + G+     H +R   A++    G    E+    G       
Sbjct: 330 AKFSELLKENGLKHIRYHDLRHSCASLLLANGVPMKEIQEWLGHSNYRTT 379


>gi|267992749|gb|ACY87634.1| integrase [Salmonella enterica subsp. enterica serovar Typhimurium
           str. 14028S]
          Length = 430

 Score = 83.5 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 49/321 (15%), Positives = 98/321 (30%), Gaps = 75/321 (23%)

Query: 75  ISEYRKSAHWGSL-----AVNSRISFESYFDQIIRKSGD--------------------F 109
           I+    +  W  L     + N+   +ES    ++   G+                     
Sbjct: 82  ITVLELTERWSELKRMEISSNTMSRYESIIKNMLPLIGENKMVSAVTTEDLLYVRKELLT 141

Query: 110 DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
            ++ +   H R+ V+ RK   S+   ++  M  +F++     Y   NP   + R K+   
Sbjct: 142 GFQVMKKDH-RTQVKGRKS--STVNNYMMLMAEIFQFGTDNGYAKENPFSGINRLKKAKG 198

Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229
              P T ++  +F        Q R  +   +Y+G+R  + C    + +  +  +I  ++ 
Sbjct: 199 EPDPLTTDEFIRFIQACG-HQQMRNLWSLAVYTGMRHGELCGLAWEDIDLHAGTIIVKRN 257

Query: 230 --------------GTIITV----ELPDGFMKLLAMTPIGKE------------------ 253
                         GT   +       D       +T +G++                  
Sbjct: 258 LTQTDEFTLPKTDAGTDRVIYLIQPAIDALRNQAQLTRLGRQFEVEVKLREYGQSVIQPC 317

Query: 254 TFFIN--------NDKQKMNATQFSIWFKAKATKAGVNKS-AHGVRKFSATISADAGATA 304
           TF  +                   +  +     +AG+    A+  R   A  S  AGA  
Sbjct: 318 TFVFSPQCVKRGPRTGYHYAVNSINKIWAPIIKRAGIRYRNAYQSRHTYACWSLSAGANP 377

Query: 305 HELMATYGWKTVDQA-ETYTK 324
           + +    G        + Y K
Sbjct: 378 NFIATQMGHTDAQMVYKVYGK 398


>gi|255322209|ref|ZP_05363355.1| hydrogenase expression/formation protein [Campylobacter showae
           RM3277]
 gi|255300582|gb|EET79853.1| hydrogenase expression/formation protein [Campylobacter showae
           RM3277]
          Length = 354

 Score = 83.5 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 29/194 (14%), Positives = 76/194 (39%), Gaps = 18/194 (9%)

Query: 166 RKTEGIRPWTKEDMQQFKS------FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN 219
           R  +     +++++++F        F S  ++ +L  + ++++G+R S++     + +  
Sbjct: 160 RGQKLPEFMSEDEVKRFLEAIENAEFKSNANRNKLIIKIIIFTGIRVSEALNLKRKDIAE 219

Query: 220 N----IFSIKTQKTGTIITVELPDGFMKLLAMTPI----GKETFFINNDKQKMNATQFSI 271
           +    +  I+ +     + +         L    I     +   FIN    ++     S 
Sbjct: 220 DGELYVIRIRGKGNKYRVVMIKRRLIEAHLDAIAINYINKEGYLFINKKGTRLTQAYVSR 279

Query: 272 WFKAKATKAGVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GAD 327
             +    KAG+ K    AH +R   AT+          +    G  +++ +  YT   ++
Sbjct: 280 IVEQILFKAGIRKEKNGAHMLRHTFATMLYKKQKDLVLVQEALGHASLNTSRIYTHFDSE 339

Query: 328 RIRLGIKNSRRISS 341
           +++L  + +  +S 
Sbjct: 340 KLKLAAQVAEELSE 353


>gi|229827180|ref|ZP_04453249.1| hypothetical protein GCWU000182_02565 [Abiotrophia defectiva ATCC
           49176]
 gi|229788798|gb|EEP24912.1| hypothetical protein GCWU000182_02565 [Abiotrophia defectiva ATCC
           49176]
          Length = 466

 Score = 83.5 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 58/411 (14%), Positives = 111/411 (27%), Gaps = 89/411 (21%)

Query: 12  TKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP--T 69
            ++R +   +IY  +   G+  +       TF     +       + +      + P  T
Sbjct: 4   IRKRGKKFSVIYRVKDDEGKERQ----TSETFATQKDAEKRKKEIEYKMAVGRFEAPKCT 59

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRS------G 122
           TL+ LI EY +        V++     S  +  II   G      I T  +         
Sbjct: 60  TLEELIEEYVRIYGHDKWGVSTYAGNLSLINNYIIPTIGKTKLTGINTHFMEKYYKSLLA 119

Query: 123 VESRKHTP----------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
           + + K T           ++  +    +R  F+ AV+ E +  NP      PK K +   
Sbjct: 120 MSAVKSTRNIDGSGTVTEATVNEIHKILRSAFRQAVKWELMEKNPATLATVPKTKRKERE 179

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIF-------- 222
            WT + + +  +        ++AF     + LR  +          +             
Sbjct: 180 IWTADMLMKALAACD-NKMLKIAFHLAFTATLRIGELLGLTWDEMDISEEAIAGNRAYVI 238

Query: 223 ---------------------------------SIKTQKT----GTIITVELPDGFMKLL 245
                                            +++  KT     +   V +P      L
Sbjct: 239 ISKQVERVSRDAVEALNAKEIILTFPSTKKNNKTVRVLKTPKTESSTRKVFIPRTVAGYL 298

Query: 246 AMTPIGKE--------------TFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVR 290
           A   + ++                        +  +      +    K G+ +   H +R
Sbjct: 299 AELKLEQDEIKEALGNEYQDYNLVMATTFGLPIGDSYLRTKMQDIIDKLGLPDVVFHSLR 358

Query: 291 KFSATI-SADAGATAHELMATYGWKTVDQA-ETYTKGADR-IRLGIKNSRR 338
             S T     +G     +    G    D   E Y    D   R   +    
Sbjct: 359 HTSVTYKLKLSGGDIKSVQGDSGHAQADMVTEVYGHIIDEDRRKNAEMMEN 409


>gi|190404345|ref|YP_001960976.1| rcorf1 [Agrobacterium rhizogenes]
 gi|158322141|gb|ABW33558.1| rcorf1 [Agrobacterium rhizogenes]
          Length = 338

 Score = 83.5 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 42/298 (14%), Positives = 90/298 (30%), Gaps = 40/298 (13%)

Query: 66  KKPTTLKWLISEYRKS--AHWGSLAVNSRISFESYFDQIIR----KSGDFD----YRKIT 115
           ++   L  LI  +          ++ N+  S+   F  +      + G        R + 
Sbjct: 7   RRTNDLAVLIERWFTDRLMKHRGVSSNTIASYRDTFRLLFAFAQARLGRSPSQLTLRDLD 66

Query: 116 TKHIRSGVE----SRKHTPSSAIQFLTSMRVLFKWAVRQE-----YVAINPCLSVERPKR 166
              I + +E     R  +  +    LT++R  F++A  +E     ++     L++   + 
Sbjct: 67  APFIGAFLEVLETQRAASVRTRNLRLTAIRSFFRYAAFEEPAHSAHIQR--VLAIPSKRC 124

Query: 167 KTEGIRPWTKEDMQQFKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222
               ++  T+ +++            G +          +GLR S+        +     
Sbjct: 125 DKRQLQFLTRPEIESILDCTDRSTWLGRRDYTLLLLAAQTGLRVSEVIDLDRDSVMLGRG 184

Query: 223 SIKT--QKTGTIITVELPDGFMKLLAM-----TPIGKETFFINNDKQKMNATQFSIWFKA 275
           +      K     +  L     + L          G    F N    +++A        A
Sbjct: 185 AHVQCVGKGRKERSTPLTKVAQEALRRWLKEPGKRGATALFPNMHGGRLSADGVQALVFA 244

Query: 276 KATKAGVNK--------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
              +A  +         S H +R  +A     AG     +    G + ++   TY   
Sbjct: 245 AVYRAREHCVSLRSKRVSPHVLRHSAAMELLQAGVDCSVIALWLGHEAMETTLTYLHA 302


>gi|83310590|ref|YP_420854.1| integrase [Magnetospirillum magneticum AMB-1]
 gi|82945431|dbj|BAE50295.1| Integrase [Magnetospirillum magneticum AMB-1]
          Length = 321

 Score = 83.5 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 36/303 (11%), Positives = 81/303 (26%), Gaps = 20/303 (6%)

Query: 29  HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLA 88
            G+R R    +       Y +A          I  P+    T+  ++  Y       +  
Sbjct: 17  GGKRFRRSLGNLDATPDNYPAAQRACADLERAIAQPKSD--TIADIVDAYLADTKAIT-- 72

Query: 89  VNSRISFESYFDQIIRKS-GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWA 147
                 +  +   +++         +I     R     R   P++  + ++ +    +WA
Sbjct: 73  ----SEYMRWMWGVLKPHCAGLRPDQIDRGWCREYASKRGKAPATIRKEISFLAAAIRWA 128

Query: 148 VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCS 207
             +          +  P    +     T+ +  +                  L +G R  
Sbjct: 129 --KGDAGGGAVFELPSPPPPRDRW--LTRPEFMRLLDAAQPHPHLVTFLHLALATGARKE 184

Query: 208 DSCRAGVQHLQ---NNIFSIKTQKTGTIITVELPDGFMKLLAMT-PIGKETFFINNDKQK 263
                    +      IF            V +      +L       +++ ++      
Sbjct: 185 AILELTWPQVDFSAGRIFLGNKPGGKARAVVPMTKSLRTVLQAQNQRREDSGYVVEYGGA 244

Query: 264 MNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET- 321
                    F   A  AG++  + H +R  +A   A  G +  ++    G       E  
Sbjct: 245 KVGN-IKKAFATAARNAGLDDVTPHDLRHTAAVWMAADGVSMEKIAQYLGHSDHKITERV 303

Query: 322 YTK 324
           Y +
Sbjct: 304 YAR 306


>gi|317123483|ref|YP_004097595.1| integrase [Intrasporangium calvum DSM 43043]
 gi|315587571|gb|ADU46868.1| integrase family protein [Intrasporangium calvum DSM 43043]
          Length = 357

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 39/246 (15%), Positives = 76/246 (30%), Gaps = 33/246 (13%)

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINP--------------CLSVERPKRKTEGIRPWTK 176
           S+  + L+S+   F +   +  V +NP                 V   +R     R  T 
Sbjct: 101 STVARRLSSISGFFGYLQARGDVVVNPVPRGLPTRRERQRPSQGVPLTRRVWRLSRILTP 160

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC--RAGVQHLQNNIFSIKTQKTGTIIT 234
            ++           + R     ++  GLR  +    R G   +      I   K G    
Sbjct: 161 AEVDALTGALRTH-RDRAMVAAMVLGGLRRCEVLGLRMGDVRVAERRLFIAEGKGGHQRL 219

Query: 235 VEL-------PDGFMKLLAMTPIGKETFFIN----NDKQKMNATQFSIWFKAKATKAGV- 282
           V +          +++       G +  F+     N    ++             +AG+ 
Sbjct: 220 VPVSSRFFTELASYLEAERPRATGTDRVFVVLRGPNRGNPLSVRGIDEVLAGARRRAGLA 279

Query: 283 NKSAHGVRKFSATISADAGATAH--ELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
           + + H +R    T   +AG      +  A  G  +++    Y   AD         R+ +
Sbjct: 280 HATCHELRHTCLTRLREAGMALEAVQAQAQAGHDSIESTRIYLHLADDWL--ASQYRKAA 337

Query: 341 SVVDSD 346
            V+D+ 
Sbjct: 338 EVIDAQ 343


>gi|260867487|ref|YP_003233889.1| putative integrase [Escherichia coli O111:H- str. 11128]
 gi|257763843|dbj|BAI35338.1| putative integrase [Escherichia coli O111:H- str. 11128]
          Length = 372

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 59/355 (16%), Positives = 112/355 (31%), Gaps = 42/355 (11%)

Query: 17  RHGKIIYYFRKG-HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT----- 70
           R G++ Y ++    G+   L          A  +    +  + EY      +  +     
Sbjct: 22  RTGRVYYQYKNPVTGKFHGLGTDKGKAEKIASTANQRIAAAEAEYFMRKIDESPSATKRR 81

Query: 71  ---LKWLISEYRKSAHWG----SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
              LK  +  Y K          +A  +          ++ + G+   +++  +     +
Sbjct: 82  GIRLKAWVDRYLKIQDTRLKNGDIAATTHKEKTRMAAYLVSRLGNHPLKELEVRDFALIL 141

Query: 124 ESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAI--NPCLSVERPKRKTEGIRPWTKEDM 179
           +    K   S+A         ++K A     V    NP  +  +P  K    R  T ED 
Sbjct: 142 DEWLDKDMVSTARVNRGLWVDIYKEAQHAGEVPPGWNPPEATRKPIPKVTRAR-LTMEDW 200

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239
           ++  +   E    R A    + +G R  D C      + N    I   KTG  + + L  
Sbjct: 201 KKIYNATPEKHFIRNAMLLAIVTGQRRDDICHMRFSDVWNEHLHITQGKTGMRLALPLTL 260

Query: 240 G-------FMKLLA-MTPIGKETFFINNDK----QKMNATQFSIWFKAKATKAGV----- 282
                     +++          + I++      + M+    S +F      AG+     
Sbjct: 261 RCDAIGITLKEVIDGCRDRILSPYLIHSRHQKQPKPMSKDNLSDYFAKARDLAGIIPPAG 320

Query: 283 --NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY--TKGADRIRLGI 333
               + H  R  S  +    G     L    G K     + Y  T+G + ++L I
Sbjct: 321 KTPPTFHEQRSLSERLYRAQGIDTKTL---LGHKVQATTDRYNDTRGQEWVKLVI 372


>gi|323484526|ref|ZP_08089891.1| phage integrase family Site-specific recombinase [Clostridium
           symbiosum WAL-14163]
 gi|323694853|ref|ZP_08109006.1| phage integrase family Site-specific recombinase [Clostridium
           symbiosum WAL-14673]
 gi|323402104|gb|EGA94437.1| phage integrase family Site-specific recombinase [Clostridium
           symbiosum WAL-14163]
 gi|323501079|gb|EGB16988.1| phage integrase family Site-specific recombinase [Clostridium
           symbiosum WAL-14673]
          Length = 283

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 40/276 (14%), Positives = 89/276 (32%), Gaps = 27/276 (9%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
           ++ Y         +  +   +     + +  +      K      +  ++ +  T +S  
Sbjct: 14  LTTYYHYLIGEEKSPTTITKYLRDLQKFLTYTAGRPITKELVITYKEELKQQYAT-ASIN 72

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP----WTKEDMQQFKSFWSEGS 190
             L S+   F +A   E         V++ K++     P     +KE+  +      E  
Sbjct: 73  SMLASLNHYFDFAGLYE-------CKVKQIKQQRRVYCPEEKELSKEEYYRLIKAAQELQ 125

Query: 191 QPRLAFEF--LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE--LPDGFMKLLA 246
           + RL+     +  +G+R S+     V+  Q+ +  +  +     I +   L    +  + 
Sbjct: 126 KDRLSLIIQTICSTGIRISELECITVRAAQSGVAEVNCKGKSRQIFIPHKLKMMLLTYIK 185

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGAT 303
              I +   FI      +N +      K     A V ++    H +R   A         
Sbjct: 186 KQHIRQGPIFITKQGNPINRSNVWREMKNLCEIAHVRENKVFPHNLRHLFAKTYYKMEKD 245

Query: 304 AHELMATYGWKTVDQAETY--------TKGADRIRL 331
             +L    G  +++    Y         +  DR++L
Sbjct: 246 ISKLADLLGHSSINTTRIYIISSGEEHRRQIDRMKL 281


>gi|310287616|ref|YP_003938874.1| phage family integrase [Bifidobacterium bifidum S17]
 gi|311064529|ref|YP_003971254.1| integrase protein [Bifidobacterium bifidum PRL2010]
 gi|309251552|gb|ADO53300.1| phage family integrase [Bifidobacterium bifidum S17]
 gi|310866848|gb|ADP36217.1| Integrase protein [Bifidobacterium bifidum PRL2010]
          Length = 309

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 38/274 (13%), Positives = 87/274 (31%), Gaps = 34/274 (12%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HTP 130
             IS Y++    G++   +   +      + R   D     +   + +  +      H  
Sbjct: 18  QWISVYKE----GAIREVTMKKYRLTQAWLGRLIPDLKLADMDRVNYQKLINGYAEHHER 73

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLS--VERPKRKTEGIRPWTKEDMQQFKSFWSE 188
            + + F   ++     AV +  +  +P     ++     ++  +   + ++    +    
Sbjct: 74  QTTMDFHHQLKGAILDAVDEGLIQRDPTRKAIIKGKPPCSKKTKYLNQFELHAVLADLEL 133

Query: 189 GSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSIKTQKT----------------- 229
           G  P   +  LL   +GLR S++             ++   KT                 
Sbjct: 134 GKGPSWDWLILLVAKTGLRFSEALGLTPDDFDFVHQTLSVSKTWDYKNGGGFVPTKNASS 193

Query: 230 --GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SA 286
                +  +L      LL   P     F    + +  N+T  +        +A V   S 
Sbjct: 194 VRKVQLDWQLIMQLSTLLKDMPASDPIFV---NGKVYNSTA-NNILARHCERANVPVISI 249

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
           HG+R   A++   AG +   +    G  +++  +
Sbjct: 250 HGLRHTHASLLLFAGVSIASVSKRLGHASMNTTQ 283


>gi|237722817|ref|ZP_04553298.1| transposase [Bacteroides sp. 2_2_4]
 gi|298482301|ref|ZP_07000488.1| transposase [Bacteroides sp. D22]
 gi|229447339|gb|EEO53130.1| transposase [Bacteroides sp. 2_2_4]
 gi|298271588|gb|EFI13162.1| transposase [Bacteroides sp. D22]
          Length = 406

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 52/276 (18%), Positives = 93/276 (33%), Gaps = 33/276 (11%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVESRKHTPSSAIQFLTSMRV 142
            +A   + +  S    I R   D    ++     +     + S   + ++   +L ++R 
Sbjct: 132 GMAAAYKSTRSSLAKFISR--PDVRMSEVDLAFVRRYEDFLYSNGASGNTVSYYLRNLRS 189

Query: 143 LFKWAVRQEYVAINPCLSVERP--KRKTEGI----RPWTKEDMQQFKSFWSEGSQPRLAF 196
           L+  AV   Y        VE P  K +T       R  +++DM Q  +     ++P+L F
Sbjct: 190 LYNQAVMDGYHPR-----VEYPFAKAQTRPAKTVKRALSRKDM-QILADLDLTNEPQLEF 243

Query: 197 --EFLLYS----GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250
             +  L+S    G+   D        + N + +    K+  +I + +      L+     
Sbjct: 244 ARDLYLFSFYAQGMAFVDIVLLKKVDICNGVLTYSRHKSKQLIRIAVTPQMQGLIDKYKT 303

Query: 251 GKETFFIN-----NDKQKMNATQFSIW---FKAKATKAGV--NKSAHGVRKFSATISADA 300
             E  F           K             K  A  A +    + +  R   AT++ D 
Sbjct: 304 ENEYLFPIISGEYASGYKQYRLALGRINRHLKKIAVVADIEVPLTTYTARHTWATLARDY 363

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
           GA    + A  G  + +    Y K  D   L   NS
Sbjct: 364 GAPISVISAGLGHTSEEMTRVYLKDFDVFMLNQVNS 399


>gi|77164139|ref|YP_342664.1| Phage integrase [Nitrosococcus oceani ATCC 19707]
 gi|254435656|ref|ZP_05049163.1| site-specific recombinase, phage integrase family protein
           [Nitrosococcus oceani AFC27]
 gi|76882453|gb|ABA57134.1| Phage integrase [Nitrosococcus oceani ATCC 19707]
 gi|207088767|gb|EDZ66039.1| site-specific recombinase, phage integrase family protein
           [Nitrosococcus oceani AFC27]
          Length = 399

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 52/318 (16%), Positives = 115/318 (36%), Gaps = 29/318 (9%)

Query: 52  TGSTPKREYIN--SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGD 108
            G +P RE     +  K   T      ++ +      +A ++R   +S +++ + ++ G+
Sbjct: 78  AGKSPAREKARDKARVKDAETFGAWAEKWMRGYQ---MADSTRDMRKSVYNRELKKRFGN 134

Query: 109 FDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE--RP 164
               +IT + +R+  +S   +  P++A+     +  +F+WA+ +     NP   V     
Sbjct: 135 QKLSEITHEDLRAVTDSIVERGAPATAVHAREVVLQVFRWAIERGQKVENPAELVRPTSI 194

Query: 165 KRKTEGIRPWTKEDMQ-QFKSFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221
            R     R  +  ++   ++     G+ P  R A + LL + +R S+   A    +  + 
Sbjct: 195 ARFEPRDRALSPAEIGLMYRYMDRVGTSPQYRAAIKLLLLTMVRKSELSNATWSEINFSE 254

Query: 222 FSIK----TQKTGTIITVELPDGFMKLLAMTPI---GKETFFINNDKQ--KMNATQFSIW 272
                     K      V L    + +         G E    +       M+A   +  
Sbjct: 255 ALWTIPKERMKRRNPHLVFLSRQALDIFIALKTFAGGSEFVLPSRYDSDIPMSAATLNRV 314

Query: 273 FK---AKATKAGVNKS---AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
                  A K G   S    H +R+ ++T+  ++G     +      +       Y K A
Sbjct: 315 LALTYRAAQKDGKQLSKFGPHDLRRTASTLLHESGYNTDWIEKCLAHEQKGVRAIYNK-A 373

Query: 327 DRIRLGIKNSRRISSVVD 344
           +     ++  +  + ++D
Sbjct: 374 EYREQRVEMLQDWADMID 391


>gi|127512199|ref|YP_001093396.1| phage integrase family protein [Shewanella loihica PV-4]
 gi|126637494|gb|ABO23137.1| phage integrase family protein [Shewanella loihica PV-4]
          Length = 409

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 55/343 (16%), Positives = 109/343 (31%), Gaps = 35/343 (10%)

Query: 24  YFRKGHGRRIRLPYPHESTFIPAYMSALT-----GSTPKREYINSPRKKPTTLKWLISEY 78
               G G    +P          Y   +       S  ++E +   ++   TLK + +E+
Sbjct: 55  RVNIGIGPYPDIPLAKAREIALEYRQLVACGVDPKSKREQESLKLKQEVLYTLKNVAAEW 114

Query: 79  R---KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE--SRKHTPSSA 133
               KS    S A  +  S ES+   +  + GD    KIT   +         K +  + 
Sbjct: 115 LEIKKSEVTKSHAAKTWSSLESH---VFPELGDTPLNKITAPLVIKVFRPIEAKGSLETI 171

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVER--PKRKTEGIRPWTKEDMQQFKSFWSEGS- 190
            +    +  +  + V   Y+  NP + +     K K E +   T  ++       S+ S 
Sbjct: 172 KRLSQRLNEIMNFGVNCGYIDSNPLVGIRAAFKKPKKESMATLTPSELPLLMRHLSQASI 231

Query: 191 --QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIITVELPDGFMKL 244
               R   E+ L++  R S++  A    L  +  +        K      + L    + +
Sbjct: 232 KRVTRCLIEWQLHTMTRPSEAATARWDELDLDNLTWTIPAEKMKRRREHVIPLTQQMLGI 291

Query: 245 LAMTPI---GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAG 301
           L         ++  F  +   K +    +     K         +HG+R  ++T   + G
Sbjct: 292 LDAIKPISGHRDYIFPADRDPKSHCNTQTANVALKRMGLKGKLVSHGMRALASTTLNEQG 351

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
             +  + A                A+++R     S  +     
Sbjct: 352 FESDLIEAALSHVD----------ANQVRAAYNRSDFLERRRP 384


>gi|253563308|ref|ZP_04840765.1| predicted protein [Bacteroides sp. 3_2_5]
 gi|251947084|gb|EES87366.1| predicted protein [Bacteroides sp. 3_2_5]
          Length = 434

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 42/260 (16%), Positives = 85/260 (32%), Gaps = 24/260 (9%)

Query: 89  VNSRISFESYFDQIIR--------KSGDFDYRKITTKHIRSGVESRKHTP-SSAIQFLTS 139
            ++  ++++    +                        I+ G E+ K T   S    +  
Sbjct: 141 ESTWNTYQTTLRSLKEFRQEIRIIDISKKLLDDFDKYLIKRGTENHKGTVEGSRRNRIKH 200

Query: 140 MRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQQFK------SFWSEGSQP 192
           +R + ++         NP  +++       E       +++++           S   + 
Sbjct: 201 IRAVIRYIEDLRIPIKNPYKTLDLAIPNDKENNIFLEIDELRRMFCLINKVKEKSIEYRV 260

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGFMKLLAMT 248
            L + F   +G+R  D+       L       I S    KT   ++V +     ++L   
Sbjct: 261 LLMYLFSCVTGIRIGDALAVKWGDLDVERSPIILSFVAIKTKKCVSVPIFPLAEEVLMYA 320

Query: 249 PIGKETFFINNDK--QKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATA 304
           P G       N K          +   +  A KA ++K  + H  R+  AT++   G   
Sbjct: 321 PEGNIDNVERNKKIFHTYPQELINKTLRELAKKANIDKHITFHSSRRTFATLAIIQGIPL 380

Query: 305 HELMATYGWKTVDQAETYTK 324
           ++L    G  +    E YTK
Sbjct: 381 NDLKNYMGHSSTKTTERYTK 400


>gi|255693724|ref|ZP_05417399.1| integrase protein [Bacteroides finegoldii DSM 17565]
 gi|260620475|gb|EEX43346.1| integrase protein [Bacteroides finegoldii DSM 17565]
          Length = 391

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 54/275 (19%), Positives = 106/275 (38%), Gaps = 24/275 (8%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVESRKH 128
           K  +  Y++     SL  +++ +  S  + +     +  +  +T        S ++SR +
Sbjct: 106 KSFLDFYKEELATSSLKESTKHNHLSTLELLQAFKKEIFFTDLTFEFVSSFDSYLQSRGY 165

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINP-CLSVERPKRKTEGIRPWTKEDMQQFKSF-- 185
             ++  + +  ++     A+ +EY+ I        R K         + E++ + +    
Sbjct: 166 HLNTIAKHMKHLKRYVNIAINKEYMDIQKYAFRKYRIKSVEGRHTHLSPEELHKLEEVQL 225

Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELP 238
              +++  +P+ AF F  Y+GLR SD      +++    +      K+ KTGT + + L 
Sbjct: 226 TEKFAKLQKPKDAFLFCCYAGLRYSDFTHLTSENIIEFHKEFWLIYKSVKTGTEVRLPLY 285

Query: 239 DGFM----KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292
             F      +L        +FF   D   +N           A  AG++K  S H  R  
Sbjct: 286 LLFEGKGIHILHRYKNDLNSFFKLKDNSNLNKE-----LNVLAKLAGISKHISFHTARHT 340

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           +AT+    GA    +    G K+V   + Y    D
Sbjct: 341 NATLLIYNGANITTVQKLLGHKSVKTTQVYANIMD 375


>gi|330997657|ref|ZP_08321502.1| site-specific recombinase, phage integrase family [Paraprevotella
           xylaniphila YIT 11841]
 gi|329570185|gb|EGG51925.1| site-specific recombinase, phage integrase family [Paraprevotella
           xylaniphila YIT 11841]
          Length = 400

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 74/221 (33%), Gaps = 23/221 (10%)

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-FKSFWSEGSQ 191
               LT +  L   AV +E +  NP   +   K+    ++  ++ ++Q+  +    E  Q
Sbjct: 177 INHCLTWLNRLIYIAVDREVLRFNPLADIPYEKKPDYKLKHISRAELQRVMEQPMPERLQ 236

Query: 192 P--RLAFEFLLYSGLRCSDSCRAGVQHLQ-----NNIFSIKTQKTGTIITVELPDGFMKL 244
              R AF F  ++GL   D  R    H+           I  +KT     + L     ++
Sbjct: 237 ELTRRAFIFSAFTGLSYVDVKRLYPSHIGTTADGRRYIRINRKKTDVESLIPLHPVAEQI 296

Query: 245 LAMTPIGKETFFINNDKQK----MNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISA 298
           L         +   +D +      N  +           AGV  N S H  R    T++ 
Sbjct: 297 L-------SLYNTTDDGRPVFPLPNRDRLWYCIHEIGILAGVKENLSYHASRHSFGTLTL 349

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
             G     +    G   +   + Y K  D      ++  ++
Sbjct: 350 SVGVPIESISKMMGHTNIRTTQGYAKVTDDK--ISEDMDKL 388


>gi|325662583|ref|ZP_08151183.1| hypothetical protein HMPREF0490_01923 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325471080|gb|EGC74306.1| hypothetical protein HMPREF0490_01923 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 401

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 40/285 (14%), Positives = 102/285 (35%), Gaps = 40/285 (14%)

Query: 83  HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS----GVESRKHTPSSAIQFLT 138
            W  ++  ++  ++  F    ++ G    + I    I       ++  + T  S     T
Sbjct: 104 EWQEISKATKDRYDRQFKLCFQEFGKRRIKSIREDDIEDFLKCAIKDHELTQKSFSNLRT 163

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR---------PWTKEDMQQFKSFWSEG 189
            +  +FK+A +++Y++ +    V+      +  R          + ++++ + + +    
Sbjct: 164 LVLGIFKYAKKKKYISYSISEIVKDLDISRKAFRKVRRTDEELVFMEDELPKIQGYLETH 223

Query: 190 SQPR-LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-------------------KT 229
           +  + L    L  +GLR  +      + ++ NI S+ +                    KT
Sbjct: 224 ADIKNLCLLLLFKTGLRPGEVVALRKESVKGNIISVDSTEICYKDELGKDTYEVRQFPKT 283

Query: 230 GTII-TVELPDGFMKLLAMTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGVN-KS 285
              I  V LP+ ++ ++    +      +      +++   Q     K       +  KS
Sbjct: 284 EAGIRDVILPEKYLWIIEKIKLLNPYQPYLFMQSGKRLLEHQIRSRLKTVCKNCNIQSKS 343

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRI 329
            + +RK  ++I  D+G     ++   G   +   +  Y +  +R 
Sbjct: 344 PNKIRKTYSSILLDSGVQESIVIQMMGHTDIATTKGHYYR--NRK 386


>gi|323937671|gb|EGB33939.1| phage integrase [Escherichia coli E1520]
          Length = 392

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 44/314 (14%), Positives = 87/314 (27%), Gaps = 65/314 (20%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHIRSGVE---- 124
           T   L   + K      L  N+    +S    +            I    I +       
Sbjct: 63  TFGELCDIWTKIKE-TELTTNTMKKTKSQLKTLRIIICESTPISHIRYSDILNYRNELLH 121

Query: 125 ------------SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
                        +  T  +   ++  +  L ++A +  +++  P   V++ +R      
Sbjct: 122 GETLYLDNPRSNKKGRTVRTVDNYIALLCSLLRFAYQSGFISTKPFEGVKKLQRNRIKPD 181

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
           P +K +         +G    L  +F +YSGLR  +      + +      +  ++  TI
Sbjct: 182 PLSKTEFNALMES-EKGQSQNLW-KFAVYSGLRHGELAALAWEDVDLEKGIVNVRRNLTI 239

Query: 233 ITVELPDG----------FMKLLAMTP-----IGKE-----TFFINNDKQK--------- 263
           + +  P                L          G       TF+     +          
Sbjct: 240 LDMFGPPKTNAGIRTVTLLQPALEALKEQYKLTGHHRKSEITFYHREYGRTEKQKLHFVF 299

Query: 264 ------------MNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMA 309
                        + +     + A   +AG+ +    H  R   A     AGA    + +
Sbjct: 300 MPRVCNGKQKPYYSVSSLGARWNAAVKRAGIRRRNPYHT-RHTFACWLLTAGANPAFIAS 358

Query: 310 TYGWKTVDQA-ETY 322
             G +T     E Y
Sbjct: 359 QMGHETAQMVYEIY 372


>gi|306842096|ref|ZP_07474767.1| Phage integrase [Brucella sp. BO2]
 gi|306287792|gb|EFM59218.1| Phage integrase [Brucella sp. BO2]
          Length = 308

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 79/239 (33%), Gaps = 12/239 (5%)

Query: 93  ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEY 152
            SF    D+I++ +    + +     I   +  R ++ ++  + + ++  L + A +   
Sbjct: 63  RSFLGEIDEILKGARFSGFDQEMLDSIIGTLRERGNSNATINRKMAALSKLLRKAHKMGD 122

Query: 153 VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY-SGLRCSDSCR 211
           +  N    + R K +   IR   +E+ ++  +      +        L  +G R  ++  
Sbjct: 123 I-FNLPEFI-RQKERVGRIRFLEQEEEKRLFAAIKSRCEDSYRLSVFLVDTGCRLGEAIG 180

Query: 212 AGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI 271
                +Q    +    K+    TV L     K   +     +  F       +N  +F  
Sbjct: 181 LTWNDIQEQRVTFWVTKSNRSRTVPLTRRARKASHIPHERLKGPF-----SMLNQVRFRQ 235

Query: 272 WFKAKATKAGVNKS----AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            +     + G+        H +R   A+     G     +    G +T+     Y   A
Sbjct: 236 IWNEAKAEVGLGADDQIVPHILRHTCASRLVRGGIDIRRVQMWLGHQTLQMTMRYAHLA 294


>gi|260545644|ref|ZP_05821385.1| phage integrase [Brucella abortus NCTC 8038]
 gi|260754402|ref|ZP_05866750.1| phage integrase [Brucella abortus bv. 6 str. 870]
 gi|260757621|ref|ZP_05869969.1| phage integrase [Brucella abortus bv. 4 str. 292]
 gi|260761447|ref|ZP_05873790.1| phage integrase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260883427|ref|ZP_05895041.1| phage integrase [Brucella abortus bv. 9 str. C68]
 gi|260097051|gb|EEW80926.1| phage integrase [Brucella abortus NCTC 8038]
 gi|260667939|gb|EEX54879.1| phage integrase [Brucella abortus bv. 4 str. 292]
 gi|260671879|gb|EEX58700.1| phage integrase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260674510|gb|EEX61331.1| phage integrase [Brucella abortus bv. 6 str. 870]
 gi|260872955|gb|EEX80024.1| phage integrase [Brucella abortus bv. 9 str. C68]
          Length = 312

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 80/239 (33%), Gaps = 12/239 (5%)

Query: 93  ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEY 152
            SF    D+I++ +    + +     I   +  R ++ ++  + + ++  L + A +   
Sbjct: 67  RSFLGEIDEILKGARFSGFDQEMLDSIIGTLRERGNSNATINRKMAALSKLLRKAHKMGD 126

Query: 153 VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY-SGLRCSDSCR 211
           +  N    + R K +   IR   +E+ ++  +      +        L  +G R  ++  
Sbjct: 127 I-FNLPEFI-RQKERVGRIRFLEQEEEKRLFAAIKSRCEDSYRLSVFLVDTGCRLGEAIG 184

Query: 212 AGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI 271
                +Q    +    K+    TV L     K   + P  +    +      +N  +F  
Sbjct: 185 LTWNDIQEQRVTFWVTKSNRSRTVPLTRRARKASHI-PRER----LKGPFSMLNQVRFRQ 239

Query: 272 WFKAKATKAGVNKS----AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            +     + G+        H +R   A+     G     +    G +T+     Y   A
Sbjct: 240 IWNEAKAEVGLGADDQIVPHILRHTCASRLVRGGIDIRRVQMWLGHQTLQMTMRYAHLA 298


>gi|212710101|ref|ZP_03318229.1| hypothetical protein PROVALCAL_01154 [Providencia alcalifaciens DSM
           30120]
 gi|212687308|gb|EEB46836.1| hypothetical protein PROVALCAL_01154 [Providencia alcalifaciens DSM
           30120]
          Length = 393

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 52/280 (18%), Positives = 92/280 (32%), Gaps = 33/280 (11%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132
             + EY       +L+ ++   +E   + +      F    +T   +++ ++ +     +
Sbjct: 96  DYLEEYLVICETRNLSPSTIKGYEKCKNALSDLH-QFHVSSLTPAILKNWIQKQTTVLKT 154

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVE--RPKRKTEGIR------PWTKEDMQQFKS 184
               L+ +R     A+    ++INP   V   R + K  G        P + +++    +
Sbjct: 155 IRNQLSFLRSSLDEAITDGVISINPVSLVSASRYQSKNSGAESSYIVDPLSPKEVSALLA 214

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-------------NNIFSIKTQKTGT 231
                 Q +  F+F + +GLR S+ C      +                +      K GT
Sbjct: 215 ATK-YEQWKNLFQFAINTGLRSSELCALRWSDIDFIENTAHVQSASVVGVIKKTKTKAGT 273

Query: 232 IITVELPDGFMKLL----AMTPIGKETFFINNDKQKMNATQFSIWFKAKA---TKAGVNK 284
              VEL    M  L      T +     F +    K  A   +I  KA      KAG+  
Sbjct: 274 R-KVELNSEAMNALNEQKQFTFMKDCVIFEDPKTNKAWAGADAIRKKAWVPTLKKAGIRY 332

Query: 285 S-AHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETY 322
              +  R   AT     GA    L    G K  +     Y
Sbjct: 333 RNPYQTRHTFATRHISQGANLFWLAGQMGHKGPEMLFRHY 372


>gi|218905654|ref|YP_002453488.1| transposase B [Bacillus cereus AH820]
 gi|218537857|gb|ACK90255.1| transposase B [Bacillus cereus AH820]
          Length = 637

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 46/331 (13%), Positives = 93/331 (28%), Gaps = 44/331 (13%)

Query: 39  HESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKS--AHWGSLAVNSRISFE 96
               +          S P+ +   +  +     K   ++Y K     +  L +N+R SF 
Sbjct: 181 DGEEWDKDVWDLRKLSLPEDKINPTSYEYTINFKGFENDYFKEIVKRYCKLMLNTR-SFS 239

Query: 97  SYFD---QIIRKS--------GDFDYRKITTKHIRSGVES---RKHTPSSAIQFLTSMRV 142
              D   ++            G     ++T   +   +     +   PS+A   ++++ V
Sbjct: 240 HVVDMASKLREFFNFINTNCEGIRRIHQLTRNEVEQYLNEINLKGLKPSTATGRISTLEV 299

Query: 143 LFKWAVRQEYVAINPCLSV----ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEF 198
            F    R ++    P   +    + PK      R   +  ++Q      +      A   
Sbjct: 300 FFSTLQRFDWKDS-PSQILIFREDYPKVPKAQPRYIDEHVLEQLNVKLDKLEPYMAAMVM 358

Query: 199 LLY-SGLRCSDSCRAGVQHL-----QNNIFSIKTQKTGTIITVELPDGFMKLL------- 245
           +L   G+R  + C      +      +        K     T+ +      L+       
Sbjct: 359 VLQECGMRIGELCTLKKGSVITDKEGDCFLKYYQWKMKKEHTIPISKEIAALILVQEQRV 418

Query: 246 -AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--------SAHGVRKFSATI 296
                 G    F   D   +    F +     A +  +           AH  R    T 
Sbjct: 419 ADELDDGCVYVFPRKDGSPLKQDTFRVKLNKLAYEEKITDNKGEIFRFHAHAFRHTVGTR 478

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGAD 327
             + G   H +    G ++ +    Y    D
Sbjct: 479 MINNGVPQHIVQKFLGHESPEMTARYAHIFD 509


>gi|16764365|ref|NP_459980.1| integrase [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|168466605|ref|ZP_02700467.1| integrase [Salmonella enterica subsp. enterica serovar Newport str.
           SL317]
 gi|169257268|ref|YP_001700644.1| bacteriophage integrase [Phage Gifsy-2]
 gi|194444835|ref|YP_002040207.1| integrase [Salmonella enterica subsp. enterica serovar Newport str.
           SL254]
 gi|16419518|gb|AAL19939.1| Gifsy-2 prophage integrase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|194403498|gb|ACF63720.1| integrase [Salmonella enterica subsp. enterica serovar Newport str.
           SL254]
 gi|195630891|gb|EDX49477.1| integrase [Salmonella enterica subsp. enterica serovar Newport str.
           SL317]
 gi|261246221|emb|CBG24025.1| integrase [Salmonella enterica subsp. enterica serovar Typhimurium
           str. D23580]
 gi|301157548|emb|CBW17038.1| bacteriophage integrase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312911992|dbj|BAJ35966.1| integrase [Salmonella enterica subsp. enterica serovar Typhimurium
           str. T000240]
 gi|321223333|gb|EFX48402.1| Integrase [Salmonella enterica subsp. enterica serovar Typhimurium
           str. TN061786]
          Length = 430

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 49/321 (15%), Positives = 98/321 (30%), Gaps = 75/321 (23%)

Query: 75  ISEYRKSAHWGSL-----AVNSRISFESYFDQIIRKSGD--------------------F 109
           I+    +  W  L     + N+   +ES    ++   G+                     
Sbjct: 82  ITVLELTERWSELKRMEISSNTMSRYESIIKNMLPLIGENKMVSAVTTEDLLYVRKELLT 141

Query: 110 DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
            ++ +   H R+ V+ RK   S+   ++  M  +F++     Y   NP   + R K+   
Sbjct: 142 GFQVMKKDH-RTQVKGRKS--STVNNYMMLMAEIFQFGTDNGYAKENPFSGINRLKKAKG 198

Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229
              P T ++  +F        Q R  +   +Y+G+R  + C    + +  +  +I  ++ 
Sbjct: 199 EPDPLTTDEFIRFIQACG-HQQMRNLWSLAVYTGMRHGELCGLAWEDIDLHAGTIIVKRN 257

Query: 230 --------------GTIITV----ELPDGFMKLLAMTPIGKE------------------ 253
                         GT   +       D       +T +G++                  
Sbjct: 258 LTQTDEFTLPKTDAGTDRVIYLIQPAIDALRNQAQLTRLGRQFEVEVKLREYGQSVIQPC 317

Query: 254 TFFIN--------NDKQKMNATQFSIWFKAKATKAGVNKS-AHGVRKFSATISADAGATA 304
           TF  +                   +  +     +AG+    A+  R   A  S  AGA  
Sbjct: 318 TFVFSPQCVKRGPRTGYHYAVNSINKIWAPIIKRAGIRYRNAYQSRHTYACWSLSAGANP 377

Query: 305 HELMATYGWKTVDQA-ETYTK 324
           + +    G        + Y K
Sbjct: 378 NFIATQMGHTDAQMVYKVYGK 398


>gi|303245272|ref|ZP_07331556.1| integrase family protein [Desulfovibrio fructosovorans JJ]
 gi|302493121|gb|EFL52983.1| integrase family protein [Desulfovibrio fructosovorans JJ]
          Length = 384

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 61/341 (17%), Positives = 106/341 (31%), Gaps = 37/341 (10%)

Query: 10  FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
           +V   R   GK+ ++    H   +R      +  + A    LTG        N       
Sbjct: 31  YVVWYRDSEGKVRWHTVGWHSDGVR-----PTDGVDARARLLTGKADDSVRANHEEAPAA 85

Query: 70  --TLKWLISEYR--KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI--RSGV 123
             T+  +++ Y          +          Y   +  K        +T + +      
Sbjct: 86  CMTVGNMVARYLSWAEGEGKRVDP----ERARYGLHLASKFEAVPIDAVTLQMLWDVKAA 141

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVER------PKRKTEGIRPWTK 176
             RK    +       +R     A+  E +   NP  +V+R      P+   +  R  T+
Sbjct: 142 LRRKMAAQTVRHCFGLLRRAVNHAIELELWKGENP-FAVKRHGPFKLPRADNQATRYLTR 200

Query: 177 EDMQQFKSFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTII 233
            + +      +  SQ         L +GLR ++      Q L     I  I+  K G   
Sbjct: 201 REARDLLVALARRSQQVHDMALLSLKTGLRATEIFGITGQDLDCAGRIIHIR-AKGGEPQ 259

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---------K 284
           +V  P   M++LA        +   ++         S  F     + G+N          
Sbjct: 260 SVPAPADIMRILAGYRRQPHEYLFQDENGGQIMWGISSTFDRVVRELGLNDGVTDKRRRV 319

Query: 285 SAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTK 324
             H +R   A+  A +G  T HELM     K ++    Y  
Sbjct: 320 RFHTLRHTFASWLAQSGQVTLHELMEMMRHKRIEMTLRYAH 360


>gi|256397668|ref|YP_003119232.1| DNA binding domain-containing protein, excisionase family
           [Catenulispora acidiphila DSM 44928]
 gi|256363894|gb|ACU77391.1| DNA binding domain protein, excisionase family [Catenulispora
           acidiphila DSM 44928]
          Length = 507

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 51/343 (14%), Positives = 102/343 (29%), Gaps = 71/343 (20%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFE-SYFDQIIRKSGDFDYRKITTKHIRSGVESR-- 126
           T++  ++ + ++     +  ++  S+  + F  ++   G     KI  +H  +       
Sbjct: 155 TVEQWLTHWVENIAALKVRPSTLASYRVAVFHHLVPNIGRHRLEKIEPEHFEALYRKMLE 214

Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
               P++  Q   + R  F  A  +  +  NP      P  +   I P+T E++++    
Sbjct: 215 AASKPATVHQVHRTARTAFGVAYTRRLIPKNPVAFATPPTVEEIEIDPYTVEEVERILVT 274

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-------NNIFSIKTQ----------- 227
             +          L++ G R  ++        +       N    ++             
Sbjct: 275 ALKRRNGFRWVLALVF-GFRQGEALGFQWSDFRIDDEDTGNETIYVRRNRLRPKYSHGCS 333

Query: 228 -------------------KTGT--------IITVELP----------DGFMKLLAMTP- 249
                              KTG+           V  P              + LA  P 
Sbjct: 334 DPCARKWPGLCPQRVELLPKTGSVKSKAAERPFPVPRPIVFLARVHREAQRQERLAAGPQ 393

Query: 250 -IGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHEL 307
            +           + +N       +K     AGV +   H  R  +AT++  AG      
Sbjct: 394 WVDGGWVIATETGEAVNPRTDWDDWKKLLKAAGVRDARLHDARHTAATLALLAGVLDRTA 453

Query: 308 MATYGWKTVDQAETY---TKGADRIRLGIKNSRRISSVVDSDD 347
              +GW      E Y   T+   R       + R+ ++V S  
Sbjct: 454 QVLFGWANAKNGERYRHVTRAVQR-----DAADRLEALVWSPR 491


>gi|229192879|ref|ZP_04319837.1| Site-specific recombinase, phage integrase [Bacillus cereus ATCC
           10876]
 gi|228590718|gb|EEK48579.1| Site-specific recombinase, phage integrase [Bacillus cereus ATCC
           10876]
          Length = 392

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 46/366 (12%), Positives = 111/366 (30%), Gaps = 44/366 (12%)

Query: 18  HGKIIYYFRKG-----HGRRIRLPYPHESTFIPAYMSALT-GSTPKREYINSPRKKPTTL 71
            G  ++ FR         RR +    ++S    AY   L   ++     +   +    T+
Sbjct: 20  KGVKLWCFRHRYYDSLGKRREKYKQGYKSE-NEAYRGLLEVKTSILNGEVKQVKNSNLTI 78

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHIRSGVES---RK 127
              +  + ++       ++SR   E+     ++   G +   ++     +    +   +K
Sbjct: 79  SEWLDIWYETHK-NEWKISSRSQRENAIKYQMKPLLGKYKLAELDKSTYKRVYINELLKK 137

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           + PS+   F    ++    AV  E +  N    +  P  +      +T E++ +F +   
Sbjct: 138 YKPSTVQLFHRLFKISINSAVDDELIPRNRFKKITIPNEEKTAENFFTAEELNEFIAAAK 197

Query: 188 EGS--QPRLAFEFLLYSGLRCSDSCRAGVQHL------------QNNIFSIKTQKTGTII 233
           +            L ++GLR  ++      ++            ++N  +   +   +  
Sbjct: 198 KHENITNYSIILLLAFTGLRKGEALGLQWNNINFEAKTLTVERTRDNKGTRTPKTKNSFR 257

Query: 234 TVELPDGFMKLLAM---------------TPIGKETFFINNDKQKMNATQFSIWFKAKAT 278
           T+ + D  +  L +                      F        +        F+    
Sbjct: 258 TILIDDTLINQLKVYRTWCKKTKLSFGLHLHDDDFIFISYQSGTPITDNPLMYSFQRILK 317

Query: 279 KAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
              + K + HG+R   AT+          +    G       + Y        L  ++  
Sbjct: 318 HTTLKKITPHGLRHTHATLLISQRIPVKVIADRLGNTPQMIFDIYGHS--FKELEEESVA 375

Query: 338 RISSVV 343
             S+ +
Sbjct: 376 AFSTSL 381


>gi|91224344|ref|ZP_01259606.1| site-specific recombinase IntIA [Vibrio alginolyticus 12G01]
 gi|91190686|gb|EAS76953.1| site-specific recombinase IntIA [Vibrio alginolyticus 12G01]
          Length = 308

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 34/210 (16%), Positives = 64/210 (30%), Gaps = 52/210 (24%)

Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225
            + +     T+E++++F        + RL  + L  SGLR  +  R  VQ +  +  +++
Sbjct: 86  TEKKLPVVLTREEIRRFVQHIDP--RYRLHIQLLYGSGLRVMECLRLRVQDIDYDYGAVR 143

Query: 226 --TQKTGTIITVELPDGFMKLLAMTPIGKETFFINND----------------------- 260
               K G   TV L     + L         ++  +                        
Sbjct: 144 VWQGKGGKNRTVTLAKELHEPLKAQVNLARNYYFKDRHMPGYAGVYISEGLRRKYPKAEL 203

Query: 261 -----------------------KQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSAT 295
                                  +  +N +      K  A+ A + K+   H +R   AT
Sbjct: 204 DFNWHFLFPSTKLSADRDTGELRRHHINESAIQRAVKRAASDASIEKTVTCHTLRHSFAT 263

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKG 325
              ++GA    +    G   V   + YT  
Sbjct: 264 HLLESGADIRTVQEQLGHTDVKTTQIYTAA 293


>gi|282881006|ref|ZP_06289696.1| site-specific recombinase, phage integrase family [Prevotella
           timonensis CRIS 5C-B1]
 gi|281305082|gb|EFA97152.1| site-specific recombinase, phage integrase family [Prevotella
           timonensis CRIS 5C-B1]
          Length = 407

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 45/257 (17%), Positives = 85/257 (33%), Gaps = 29/257 (11%)

Query: 94  SFESYF-DQIIRKSGDFD--YRKITTKHIRSGVESRKHTPSSAIQF----LTSMRVLFKW 146
               +F + +I K G  D    + T   ++            A       L +++ +  +
Sbjct: 138 VLRRHFAEFLIYKYGKKDIGLAEFTPSVVQDFELYLSTAAGCAYNTSAKKLKALKTVTIY 197

Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ---PRLAFEFLLYSG 203
           A ++ Y+  +P L+  R   +       T E++ +  +      +    R  F F  ++G
Sbjct: 198 AQKRGYLLHDPFLN-HRFHLEPVNRGFLTDEEIMKIANKEIAIQRLELVRDVFIFSCFTG 256

Query: 204 LRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDGFMKLLAMTP-----IGKET 254
           L   D       ++           K QKT     V L D    ++A         GK  
Sbjct: 257 LAYIDVSNLTPDNIVTLDDKQWIMTKRQKTNVETNVLLLDIPKSIIAKYSHKTYRDGKLF 316

Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYG 312
             + N K        + + K  A   G+ K  + H  R   AT+S   G     +    G
Sbjct: 317 PILTNQKT-------NAYLKEIADICGIKKNLTFHLARHTFATMSLSKGVPMESVSKMLG 369

Query: 313 WKTVDQAETYTKGADRI 329
              +   + Y +  ++ 
Sbjct: 370 HTNIKTTQLYARITNKK 386


>gi|240147142|ref|ZP_04745743.1| site-specific recombinase, phage integrase family [Roseburia
           intestinalis L1-82]
 gi|257200666|gb|EEU98950.1| site-specific recombinase, phage integrase family [Roseburia
           intestinalis L1-82]
          Length = 413

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 53/396 (13%), Positives = 119/396 (30%), Gaps = 76/396 (19%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEY 78
           GK +Y +    G+R  +   +    +      +     + + +++     +T+ ++   Y
Sbjct: 24  GKYVYTYVDPEGKRRSI---YSKDIMELREREVKLMKDQLDGLDTYAAGTSTINFVFDRY 80

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVESRKHTPSSAIQFL 137
             +     L   +  +++  +D+ IR   G      +    +    +         I  L
Sbjct: 81  ISTKA--ELRETTMRNYKYMYDRFIRGGFGKKKIAAVKYSDVLQFYQHLLKEKEMQINTL 138

Query: 138 TSMRVL----FKWAVRQEYVAINPCLSV-----ERPKRKTEGIRPWTKEDMQQFKSFWSE 188
            ++  +    F+ AVR   + +NP   V     ++P +        T E  + F  +  E
Sbjct: 139 ETIHTVLHPTFQLAVRDNIIRVNPSDGVMAQIKKQPGKNHGVRHALTVEQQRAFIRYIDE 198

Query: 189 GSQPRLA---FEFLLYSGLRCSDSCRAGVQHLQNNI-----------------------F 222
                     F+FLL +G R  ++     + +                           F
Sbjct: 199 SPTFYHWASFFKFLLGTGCRIGEAIGIRWEDIDFEKRTISINHSVVYYSREFKEHPICSF 258

Query: 223 SIKTQKTGTII-TVELPDGFMKLLAMTPIG--------------KETFFINNDKQKMNAT 267
           ++   KT   I T+ + D     L M                  K   F+N      N  
Sbjct: 259 AVSLPKTEAGIRTIPMMDTVYDALQMELDDQKEHGFNETVIDGMKGFIFMNRFGNIHNPQ 318

Query: 268 QFSIWFKAK---------ATKAGVNK--------SAHGVRKFSATISADAGATAHELMAT 310
             +   K              A  ++        S H +R    +   +       + + 
Sbjct: 319 AVNRAIKRIYEAHNAEEVVKAAKQHREPVIIPHFSCHHLRHTFCSRFCENETNLKVIQSI 378

Query: 311 YGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVVDS 345
            G   ++   + Y +  D  +   +  + ++  +D 
Sbjct: 379 MGHANIETTMDIYAEVTDTKK--QEAIQNLAHNLDV 412


>gi|62179533|ref|YP_215950.1| Gifsy-2 prophage integrase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|62127166|gb|AAX64869.1| Gifsy-2 prophage integrase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|322714001|gb|EFZ05572.1| Gifsy-2 prophage integrase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
          Length = 425

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 52/347 (14%), Positives = 109/347 (31%), Gaps = 80/347 (23%)

Query: 75  ISEYRKSAHWGSL-----AVNSRISFESYFDQIIRKSGD--------------------F 109
           I+    +  W  L     + N+   +ES    ++   G+                     
Sbjct: 82  ITVLELTERWSELKRMEISSNTMSRYESIIKNMLPLIGENKMVSAVTTEDLLYVRKELLT 141

Query: 110 DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
            ++ +   H R+ V+ RK   S+   ++  M  +F++     Y   NP   + R K+   
Sbjct: 142 GFQVMKKDH-RTQVKGRKS--STVNNYMMLMAEIFQFGTDNGYAKENPFSGINRLKKAKG 198

Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229
              P T ++  +F   +    Q R  +   +Y+G+R  + C    + +  +  +I  ++ 
Sbjct: 199 EPDPLTTDEFIRFIQAYG-HQQMRNLWSLAVYTGMRHGELCGLAWEDIDLHAGTIIVKRN 257

Query: 230 --------------GTIITV----ELPDGFMKLLAMTPIGKE------------------ 253
                         GT   +       D       +T +G++                  
Sbjct: 258 LTQTDEFTLPKTDAGTDRVIYLIQPAIDALRNQAQLTRLGRQFEVEVKLREYGQSVIQPC 317

Query: 254 TFFIN--------NDKQKMNATQFSIWFKAKATKAGVNKS-AHGVRKFSATISADAGATA 304
           TF  +                   +  +     +AG+    A+  R   A  S  AGA  
Sbjct: 318 TFVFSPQCVKRGPRTGYHYAVNSINKIWAPIIKRAGIRYRNAYQSRHTYACWSLSAGANP 377

Query: 305 HELMATYGWKTVDQA-ETYT-----KGADRIRLGIKNSRRISSVVDS 345
           + +    G        + Y      K A+++ L  +   R +  + +
Sbjct: 378 NFIATQMGHTDAQMVYKVYGKWMSEKSAEQVSLLNQALSRYAPSLPA 424


>gi|294012996|ref|YP_003546456.1| putative integrase [Sphingobium japonicum UT26S]
 gi|292676326|dbj|BAI97844.1| putative integrase [Sphingobium japonicum UT26S]
          Length = 345

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 43/239 (17%), Positives = 77/239 (32%), Gaps = 27/239 (11%)

Query: 106 SGDFDYRKITTK--HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163
            GDF  R+      H R    +  H P+   ++    +      V  +   + P L ++ 
Sbjct: 98  IGDFSLREPKQAWEHFRRAYLT-GHNPAGQDRYRAVFQAAIN--VHHDLHDL-PPLRIKA 153

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ----HLQN 219
                E +R  +KED  +    +S   QP      L + G R   + +         ++ 
Sbjct: 154 IPFNNERVRFLSKEDRDRLIEAYSPHIQP--IITLLAFHGPRIQTALQLPWGVEGVDMEQ 211

Query: 220 NIFSIKTQKTGTIITVELPDGFMKLLA-----MTPIGKETFFINNDKQKM---------N 265
               +   K   I +V +    M +L           K   F+N   +            
Sbjct: 212 GSIRLNHSKNAVIRSVPMHPRVMDVLRPIWEKRDRPTKGHVFLNRLGKPYQDTRKAKIPG 271

Query: 266 ATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
                        +AGV + + H  R   A+    AG     +M   GWK++   + Y+
Sbjct: 272 GNPIKNQHATACKRAGVEDFTVHDWRHHWASHCVMAGIDLITIMNMGGWKSLRMVQRYS 330


>gi|331004356|ref|ZP_08327830.1| hypothetical protein HMPREF0491_02692 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330411160|gb|EGG90577.1| hypothetical protein HMPREF0491_02692 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 352

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 39/287 (13%), Positives = 91/287 (31%), Gaps = 42/287 (14%)

Query: 99  FDQIIRKSGDFDYRKITT---KHIRSGVESRK----------HTPSSAIQFLTSMRVLFK 145
             +   K  D     + +     I   +E  K          +  ++  + +++++ +FK
Sbjct: 66  IKRSCSKISDIPLSSLESLSVTDIEEYMEYLKYRDTDGKKISNKENAVKRKISTLKSVFK 125

Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF--KSFWSEGSQPR---------- 193
           +  R E ++ N    V+ PK  ++ I     +++     ++   EG   R          
Sbjct: 126 YFYRVEKLSENIMERVQLPKLHSKEIIRLDIDEVAMMIDEAENGEGLSERQKAYHNKTKI 185

Query: 194 ---LAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAMTP 249
                   LL +G+R S+     +  +   +   +  +K G  +T+   D   + L    
Sbjct: 186 RDVALLSLLLGTGIRVSECVGLNISDVDFKHNGILIHRKGGKEVTIYFSDEVKEALQNYF 245

Query: 250 IGK----------ETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS 297
             +             F++   ++++        K  A         + H +R    T  
Sbjct: 246 DERVLILEESGHEGALFLSMQNKRLSVRSVEKLVKKYAKIISPLKKITPHKLRSTYGTNL 305

Query: 298 ADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVV 343
                  + +    G   V+   + Y    D  R   +N  ++    
Sbjct: 306 YKETGDIYLVADVLGHSDVNTTKKHYAAIEDDRRRSARNVVKLREKQ 352


>gi|327253322|gb|EGE64964.1| prophage lambda integrase [Escherichia coli STEC_7v]
          Length = 339

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 55/304 (18%), Positives = 101/304 (33%), Gaps = 33/304 (10%)

Query: 59  EYINSPRKKPTTLKWLISEYRKSAHWG----SLAVNSRISFESYFDQIIRKSGDFDYRKI 114
           E  ++ +++   LK  +  Y K          +A  +          ++ + G+   +++
Sbjct: 40  ESPSATKRRGIRLKAWVDRYLKIQDTRLKNGDIAATTHKEKTRMAAYLVSRLGNHPLKEL 99

Query: 115 TTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAI--NPCLSVERPKRKTEG 170
             +     ++    K   S+A         ++K A     V    NP  +  +P  K   
Sbjct: 100 EVRDFALILDEWLDKDMVSTARVNRGLWVDIYKEAQHAGEVPPGWNPPEATRKPIPKVTR 159

Query: 171 IRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
            R  T ED Q+  +   E    R A    + +G R  D C      + N    I   KTG
Sbjct: 160 AR-LTLEDWQKIYNATPEKHFIRNAMLLAIVTGQRRDDICHMRFSDVWNEHLHITQGKTG 218

Query: 231 TIITVELPDG-------FMKLLA-MTPIGKETFFINNDKQK----MNATQFSIWFKAKAT 278
             + + L            +++          + I++  QK    M+    S +F     
Sbjct: 219 MRLALPLTLRCDAIGITLKEVIDGCRDRILSPYLIHSRHQKQPKSMSKDNLSDYFAKARD 278

Query: 279 KAGV-------NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY--TKGADRI 329
            AG+         + H  R  S  +    G     L    G K     + Y  T+G + +
Sbjct: 279 LAGIIPPAGKTPPTFHEQRSLSERLYRAQGIDTKTL---LGHKVQATTDRYNDTRGQEWV 335

Query: 330 RLGI 333
           +L I
Sbjct: 336 KLVI 339


>gi|317479189|ref|ZP_07938325.1| integrase [Bacteroides sp. 4_1_36]
 gi|316904633|gb|EFV26451.1| integrase [Bacteroides sp. 4_1_36]
          Length = 394

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 50/284 (17%), Positives = 90/284 (31%), Gaps = 40/284 (14%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRK----HT 129
           S YR+S             +  Y  + IR  G  D  +  IT +   + +   K    H 
Sbjct: 126 SSYRQS-----------KMYHYYLGEYIRSLGKEDMLFTDITEEFGTNFILYLKTNYPHK 174

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---W 186
           PS     L  ++ L   AV +  +  NP   ++  K+    +   +K  +Q+  S     
Sbjct: 175 PSYRNHCLCWLKRLVYLAVDKGILRYNPLDDIKYEKKAPTKLMYISKNQLQEIMSHPKPD 234

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---NNIFSIKT--QKTGTIITVELPDGF 241
                 R  F F  + GL   D       H+         I+T  +KT     + L    
Sbjct: 235 PLQELARRTFIFSCFCGLAYVDVRNLYPHHIGTTAEGRKYIRTYRKKTSVESFIPLHPVA 294

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV------NKSAHGVRKFSAT 295
            +++         +   +D + +           +  + G       N S H  R    T
Sbjct: 295 EQII-------SLYNTTDDSKPIFPLPIRSMIWFEIHELGFSLQFKHNLSYHQSRHTFGT 347

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
           +   AG     +    G   +   + Y K  D      ++  ++
Sbjct: 348 MMVSAGVPMESISKMMGHTNIRTTQGYAKVTDDK--ISEDMDKL 389


>gi|294839832|ref|ZP_06784515.1| putative phage integrase [Acinetobacter sp. 6013113]
 gi|294860234|ref|ZP_06798003.1| putative phage integrase [Acinetobacter sp. 6013150]
          Length = 383

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 63/366 (17%), Positives = 108/366 (29%), Gaps = 57/366 (15%)

Query: 7   LPPFVTKERTRHGKIIYYF-RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY----- 60
           LP  V   R R G I  YF R      I LP+P  +  I A     +    K E+     
Sbjct: 10  LPKGV---RIRSGAIQIYFERNKQAYNITLPHPPTAEGISAAAKIRSQLITKAEWGILTD 66

Query: 61  --INSPRKKPTTLKWLISEYRKSAH--WGSLAVNS----------RISFESYFD-QIIRK 105
             I   + +    K LI     S    +  +A             R  +    +   +  
Sbjct: 67  KDIAEAKGETIDKKHLI---LNSNEVLFQEVAQKYLRQCEANLDSRKGYVRILNCHWMPH 123

Query: 106 SGDFDYRKITTKHIRSGV-ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP 164
                  +IT   IR  + +    T  +    L  +R +F+ A+  + +  NP   +E  
Sbjct: 124 FALRPINQITNDEIRDLIIDKNFKTAKTLNNSLIPLRGVFETAMNSKLILDNPMHGIENK 183

Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGS--QPRL---AFEFLLYSGLRCSDSCRAGVQHLQ- 218
           + +     P+++ +M     +         RL    +E   +SG R S+        +  
Sbjct: 184 RIQQAIPDPFSRAEMNALLKWLDVNLEGTNRLYYWYYELAFWSGCRPSELFALRWNDIDW 243

Query: 219 -NNIFSI----------KTQKTGTIITVELPD----GFMKLLAMTPIGKETFFINNDKQK 263
            N    I             KT T+  V L D       ++  +                
Sbjct: 244 FNGTMRISKSRVRGYEKSVTKTHTVRDVYLNDRSTRALTEIQKLGLSRDYVMICPETGLP 303

Query: 264 MNATQFSIWFK-----AKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
               +    F+             ++ A+  R   AT+    G     +    G      
Sbjct: 304 F-YDERPPRFRLNEAMKACRI--RHRPAYNARHTYATMMLMDGVNPVFVADQMGHSLQML 360

Query: 319 AETYTK 324
            + Y K
Sbjct: 361 MKRYAK 366


>gi|282877432|ref|ZP_06286255.1| site-specific recombinase, phage integrase family [Prevotella
           buccalis ATCC 35310]
 gi|281300484|gb|EFA92830.1| site-specific recombinase, phage integrase family [Prevotella
           buccalis ATCC 35310]
          Length = 407

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 45/257 (17%), Positives = 85/257 (33%), Gaps = 29/257 (11%)

Query: 94  SFESYF-DQIIRKSGDFD--YRKITTKHIRSGVESRKHTPSSAIQF----LTSMRVLFKW 146
               +F + +I K G  D    + T   ++            A       L +++ +  +
Sbjct: 138 VLRRHFAEFLIYKYGKKDIGLAEFTPSIVQDFELYLSTAAGCAYNTSVKKLKALKTVTIY 197

Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ---PRLAFEFLLYSG 203
           A ++ Y+  +P L+  R   +       T E++ +  +      +    R  F F  ++G
Sbjct: 198 AQKRGYLLHDPFLN-HRFHLEPVNRGFLTDEEIMKIANKEIAIQRLELVRDVFIFSCFTG 256

Query: 204 LRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDGFMKLLAMTP-----IGKET 254
           L   D       ++           K QKT     V L D    ++A         GK  
Sbjct: 257 LAYIDVSNLTPDNIVTLDDKQWIMTKRQKTSVETNVLLLDIPKSIIAKYSHKTYRDGKLF 316

Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYG 312
             + N K        + + K  A   G+ K  + H  R   AT+S   G     +    G
Sbjct: 317 PILTNQKT-------NAYLKEIADICGIKKNLTFHLARHTFATMSLSKGVPMESVSKMLG 369

Query: 313 WKTVDQAETYTKGADRI 329
              +   + Y +  ++ 
Sbjct: 370 HTNIKTTQLYARITNKK 386


>gi|189402498|ref|ZP_02782845.2| phage integrase family protein [Escherichia coli O157:H7 str.
           EC4401]
 gi|189355217|gb|EDU73636.1| phage integrase family protein [Escherichia coli O157:H7 str.
           EC4401]
 gi|320188130|gb|EFW62795.1| Phage integrase [Escherichia coli O157:H7 str. EC1212]
 gi|326340427|gb|EGD64230.1| Phage integrase [Escherichia coli O157:H7 str. 1044]
          Length = 339

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 54/304 (17%), Positives = 100/304 (32%), Gaps = 33/304 (10%)

Query: 59  EYINSPRKKPTTLKWLISEYRKSAHWG----SLAVNSRISFESYFDQIIRKSGDFDYRKI 114
           E  ++ +++   LK  +  Y K          +A  +          ++ + G+   +++
Sbjct: 40  ESPSATKRRGIRLKAWVDRYLKIQDTRLKNGDIAATTHKEKTRMAAYLVSRLGNHPLKEL 99

Query: 115 TTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAI--NPCLSVERPKRKTEG 170
             +     ++    K   S+A         ++K A     V    NP  +  +P  K   
Sbjct: 100 EVRDFALILDEWLDKDMVSTARVNRGLWVDIYKEAQHAGEVPPGWNPPEATRKPIPKVTR 159

Query: 171 IRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
            R  T ED Q+  +   E    R A    + +G R  D C      + N    I   KTG
Sbjct: 160 AR-LTMEDWQKIYNATPEKHFIRNAMLLAIVTGQRRDDICHMRFSDVWNEHLHITQGKTG 218

Query: 231 TIITVELPDG-------FMKLLA-MTPIGKETFFINNDK----QKMNATQFSIWFKAKAT 278
             + + L            +++          + I++      + M+    S +F     
Sbjct: 219 MRLALPLTLRCDAIGITLKEVIDGCRDRILSPYLIHSRHQKQPKPMSKDNLSDYFAKARD 278

Query: 279 KAGV-------NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY--TKGADRI 329
            AGV         + H  R  S  +    G     L    G K     + Y  T+G + +
Sbjct: 279 LAGVIPPAGKTPPTFHEQRSLSERLYRAQGIDTKTL---LGHKVQATTDRYNDTRGQEWV 335

Query: 330 RLGI 333
           +L I
Sbjct: 336 KLVI 339


>gi|150007391|ref|YP_001302134.1| integrase [Parabacteroides distasonis ATCC 8503]
 gi|149935815|gb|ABR42512.1| integrase [Parabacteroides distasonis ATCC 8503]
          Length = 403

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 52/288 (18%), Positives = 95/288 (32%), Gaps = 33/288 (11%)

Query: 68  PTTL----KWLISEYRKSAHWGSLAVNSRIS--FESYFDQIIRKSG--DFDYRKITTKHI 119
           PTTL    +W     +K +       + R S  ++ Y    +   G  D    ++T    
Sbjct: 101 PTTLLQMGEWERERLKKHSEEIDSTSSYRSSMYYQKYLTDFLTSIGKKDIPLEEVTEDFG 160

Query: 120 RSGVESRKH----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
           +S     K       S     L  +  L   AV +E + +NPC  +E   +     R  +
Sbjct: 161 KSYKAHLKKCKNFGVSQTNHCLRWLNRLLYLAVDKEILRVNPCEDLEYETKPEARHRYIS 220

Query: 176 KEDMQQFKS---FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-----FSIKTQ 227
           +E+ ++  S   +       R AF F   +GL   D       H+  N        I  +
Sbjct: 221 REEFKKILSTPMYDKRMELARRAFIFSTLTGLAYVDIKLLHPHHIGTNADGRRYIRINRK 280

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA--TQFSIWFKAKATKAGVNK- 284
           KT     + L     ++L         +   +D++ +     + ++WF+       + K 
Sbjct: 281 KTKVEAFIPLHPIAERIL-------SLYNTTDDEKPVFPLPNRDALWFEVHELGITIGKE 333

Query: 285 ---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              + H  R    T    A      +    G   +   + Y +  D  
Sbjct: 334 ENLTYHQSRHSFGTFLISADIPIESIAKMMGHSNIRTTQGYARITDDK 381


>gi|298373373|ref|ZP_06983362.1| integrase [Bacteroidetes oral taxon 274 str. F0058]
 gi|298274425|gb|EFI15977.1| integrase [Bacteroidetes oral taxon 274 str. F0058]
          Length = 431

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 54/318 (16%), Positives = 104/318 (32%), Gaps = 31/318 (9%)

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK 113
           +T     +   + +   +K  +   R    + +L  + R   E   D+ ++        +
Sbjct: 98  ATNPTTLLAMSKAELQAVKESVGRLRAEGTYLNLYYSDRNLREFVKDKGLQDIPISTITE 157

Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
              +  R  ++ R    S+    L  +  L   AV    +  NP  + E  K + + IR 
Sbjct: 158 SLFEEYRFFLKKRGLKASTVNTNLCWLSRLMFRAVSSRIIRCNPFENAEYEKEEKK-IRF 216

Query: 174 WTKEDMQQFKSF---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---NNIFSIK-- 225
             K D+ +  +      E    RL F F  ++G+  +D      +H+Q   +    I+  
Sbjct: 217 LQKGDVMKLMAMRMNDREAELARLMFVFSCFTGMAIADMENLEYRHIQTAADGQRYIRKE 276

Query: 226 TQKTGTIITVELPDGFMKLL--------------AMTPIGKETFFINNDKQKMNATQFSI 271
            QKT     V L      ++              A+   G    F    +   + +    
Sbjct: 277 RQKTKVEFVVPLHPIAEAIINYYRKELAGNEEQQAVKEKGDSLVF----QPHCSRSVMGK 332

Query: 272 WFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
                    G+    S H  R    T+S  AG     +    G  ++   + Y +  D  
Sbjct: 333 NLSIVGKACGIRQRLSYHVARHTFGTMSLSAGIPIESIAKMMGHASISSTQIYAQVTDNK 392

Query: 330 RLGIKNSRRISSVVDSDD 347
               K+  R+ +   + D
Sbjct: 393 --ISKDMDRLIAKQSAKD 408


>gi|317130968|ref|YP_004097250.1| integrase family protein [Bacillus cellulosilyticus DSM 2522]
 gi|315475916|gb|ADU32519.1| integrase family protein [Bacillus cellulosilyticus DSM 2522]
          Length = 291

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 40/278 (14%), Positives = 85/278 (30%), Gaps = 19/278 (6%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
               + +  KS       +N+   F ++  +  +   D              +   K++P
Sbjct: 7   FNNYLEDMDKSERTIVSYLNTISQFSNWLIK-EKFIDDLSIVATREIKAYRQILLEKYSP 65

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT-KEDMQQFKSFWSEG 189
           ++  Q L  ++  +K+  +   +  +P   ++  K      +  T  E+++       +G
Sbjct: 66  ATVNQKLACIKTFYKFMTQTHIIKEDPAKYIKLQKVDNIKSQYMTRAEELRVMSKAKEKG 125

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHL---QNNIFSIKTQKTGTIITVELP-------- 238
            +       LL  GLR S+     +  L   +     +K  K      V +P        
Sbjct: 126 IKAYAILMVLLKCGLRPSELSSLTLDCLFLDKEPTLLVKDSKRNKSRYVPIPMDTCKALN 185

Query: 239 ---DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSAT 295
              D   K   +     +  F +  + ++         +    +AGV      +R   A 
Sbjct: 186 AWIDERNKSDKIYHTRSKYVFTSQRQDRLEVRAIQRVVEVIGIEAGVELYCIRLRATYAN 245

Query: 296 ISADAGA-TAHELMATYGWKTVDQAETYT--KGADRIR 330
                       L    G  ++     YT     D+ R
Sbjct: 246 SLIQNANIPLSALATLMGHDSIQTTSRYTTINEQDKRR 283


>gi|261878741|ref|ZP_06005168.1| integrase [Prevotella bergensis DSM 17361]
 gi|270334751|gb|EFA45537.1| integrase [Prevotella bergensis DSM 17361]
          Length = 293

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 48/266 (18%), Positives = 84/266 (31%), Gaps = 32/266 (12%)

Query: 108 DFDYRKITTKHIRSGV---ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP 164
           D     IT           + R+   S+    L  +  L   AV +  +  NP  + +  
Sbjct: 3   DIPIGTITEDLFEEYRFFLKKRRLKASTINSNLCWLSRLMFRAVSKRIIRCNPFENAKFE 62

Query: 165 KRKTEGIRPWTKEDMQQFKSF---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--- 218
           K + + IR   K D+ +  +      E    RL F F  ++GL  SD      +H+Q   
Sbjct: 63  KVEKK-IRFLQKSDVMKVMAMKMNDKEAELARLMFVFSCFTGLAISDMENLEYKHIQTAA 121

Query: 219 NNIFSIK--TQKTGTIITVELPD-------------GFMKLLAMTPIGKETFFINNDKQK 263
           +    I+   QKT     V L                  ++        +    + D  +
Sbjct: 122 DGQMYIRKERQKTKVEFIVPLHPIAETIISHCRKEPERSEVQQTVKEKGDHLVFHRDCSR 181

Query: 264 MNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
                            G+    S H  R    T+S  AG     +    G  ++   + 
Sbjct: 182 SVMDAKLSIVGKAC---GIRQRLSFHMARHTFGTMSLSAGIPIESIAKMMGHASISSTQV 238

Query: 322 YTKGADRIRLGIKNSRRISSVVDSDD 347
           Y +  DR     ++  R+ +   + D
Sbjct: 239 YAQVTDRK--ISEDMDRLIAKYKAKD 262


>gi|256840762|ref|ZP_05546270.1| integrase [Parabacteroides sp. D13]
 gi|256738034|gb|EEU51360.1| integrase [Parabacteroides sp. D13]
          Length = 189

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 69/181 (38%), Gaps = 19/181 (10%)

Query: 181 QFKSFWSEGSQPRLAFEFLL---YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237
            F +   + S  R+     L   +SG+   D      +++++ I     QK+G++I +E+
Sbjct: 1   MFNAPLEDPSLRRVQLTVRLMFAFSGIAFVDLTHLKWENIRDGILQYHRQKSGSLIQLEI 60

Query: 238 PDGFMKLL----AMTPIGKETFFINNDKQK----------MNATQFSIWFKAKATKAG-- 281
           P G ++LL    A T       F     ++             ++F+   K  A   G  
Sbjct: 61  PSGALRLLDELSACTAKESLYLFPFLSGRRTGEAAYKEYNRTLSRFNHDLKLLARSTGVT 120

Query: 282 VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
           +  +++ +R   A+   +   +   +    G K++   + Y K     RL   N     S
Sbjct: 121 LPVTSYTIRHSFASFLKEQDVSIEVISELLGHKSIKTTQIYLKSFSLERLSTVNRNCFES 180

Query: 342 V 342
           V
Sbjct: 181 V 181


>gi|298528847|ref|ZP_07016250.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298529858|ref|ZP_07017260.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298529885|ref|ZP_07017287.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298531268|ref|ZP_07018668.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298531275|ref|ZP_07018675.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298508878|gb|EFI32784.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298508885|gb|EFI32791.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298509232|gb|EFI33136.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298509259|gb|EFI33163.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298510283|gb|EFI34186.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
          Length = 322

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 40/298 (13%), Positives = 84/298 (28%), Gaps = 51/298 (17%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF 136
           +YRK   + + ++ +++      D  +R +    +  +T        +  K +P++    
Sbjct: 17  QYRKELGYVNKSLANQL---RALDYYVRDNA-RGWEDLTPAFFLGFRDGIKGSPATVNNV 72

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF------------KS 184
           + + R  F +  R      NP   +            ++ E ++Q             + 
Sbjct: 73  IQATRNFFAYLHRTGCCEHNPVQDLPAKTENAFIPFIFSPEQVEQLLQGVQSQIRRSREK 132

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFM 242
            +       +A       GLR S+    G++H         I+  K      + +P    
Sbjct: 133 CFLVDMGIYIALMLQARCGLRMSEPLNLGLEHFDPVQGTIYIQKTKFHKDRLIPIPWEAQ 192

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFK---------AKATKAGVNK--------- 284
           K L      ++     +         F    +             + G++          
Sbjct: 193 KELDNFLSLRDALCCTS---PYLLPGFKNALRTNQVYPVFHRAVRETGIHAPRRIIANMV 249

Query: 285 ----SAHGVRKFSATISADA--------GATAHELMATYGWKTVDQAETYTKGADRIR 330
               + H +R   A  +  A         A    L A  G         Y K  D  +
Sbjct: 250 FGHPTPHSLRHSFAVNTLKAARDRGRDPQAVLPVLSAYMGHSKYRYTALYLKVMDAEK 307


>gi|59712648|ref|YP_205424.1| DNA integration/recombination/invertion protein [Vibrio fischeri
           ES114]
 gi|59480749|gb|AAW86536.1| DNA integration/recombination/invertion protein [Vibrio fischeri
           ES114]
          Length = 325

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 54/316 (17%), Positives = 101/316 (31%), Gaps = 27/316 (8%)

Query: 18  HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISE 77
           +GK +      + +RIR  +  +S     +       + ++ ++ + +    TL  LI  
Sbjct: 8   NGKYLVEIYLPNKKRIRKTFATQSE-AKRFEQFTQTESIQKPWMPA-KDDNRTLNELIEL 65

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS--SAIQ 135
           +    H  +L+   +   +     ++ K+     R+IT        + R  T S  +A  
Sbjct: 66  WYG-LHGQALSDGPKRKNKLLAMSLMMKNPIA--REITASDFSKYRQLRIETVSIKTANN 122

Query: 136 FLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE--GSQP 192
             T +  LF    R   +   NP   +   K K   +   T E++        +      
Sbjct: 123 DQTYLNALFNELKRLGEWNYNNPLAELRALKYKQPEMGFLTSEEITLVFDELEKCRNFDA 182

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252
            L  +  + +G R  ++       L  +  +    K     TV +     + L   P   
Sbjct: 183 YLISKICISTGCRWGEAESLTSTQLTPHRITFTHTKGNKHRTVPISKELYEEL---PKKN 239

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGV----NKSAHGVRKFSATISADAGATAHELM 308
              F N  K           FK    + GV     +S H +R   A+     G     L 
Sbjct: 240 GRLFSNCIKS----------FKMAVNRTGVQLPKGQSTHVLRHTFASHFMMNGGNILVLQ 289

Query: 309 ATYGWKTVDQAETYTK 324
              G  ++     Y  
Sbjct: 290 QILGHASITDTMKYAH 305


>gi|312199602|ref|YP_004019663.1| integrase family protein [Frankia sp. EuI1c]
 gi|311230938|gb|ADP83793.1| integrase family protein [Frankia sp. EuI1c]
          Length = 404

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 59/321 (18%), Positives = 100/321 (31%), Gaps = 59/321 (18%)

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESR- 126
            T++ L+ EY  +A    +   +R  +  Y  + I+   G    R+I T+ + +      
Sbjct: 74  ATVERLVDEYLATA---DIEPTTRHMYAGYARRNIVPTIGKKTVREIRTRTLETLYARLR 130

Query: 127 --------KHTP---------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
                   K  P         S+  Q    +   F  AVR E+V  +P  + + P+    
Sbjct: 131 VCRKLCNGKGRPGHVCEPLAVSTIRQIHAVVSGAFAAAVRWEWVDESPAENAKLPRAHAV 190

Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS-GLRCSDSCRAGVQHLQNNIFSIKTQ- 227
              P +  D+    +   E   P   F +L  + G R  + C     +L     +++   
Sbjct: 191 EPDPPSPTDVAAIVTKAWELDPPLALFLWLAVTAGARRGELCELRWNNLDLTAGTMRVAQ 250

Query: 228 --------------KTGTIITVEL-----------PDGFMKLLAMTPI--GKETFFIN-- 258
                         KT    T+ L            D     LA   +    + F  +  
Sbjct: 251 NYAVRGGNKLHKATKTHQKRTLALDEVTCQLLQEEHDRIAGALAKVDVTLADDAFVFSHD 310

Query: 259 -NDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGW---- 313
               +  N    +      A  AGV  +   +R ++AT    AG          G     
Sbjct: 311 PAHSKPWNPDSATHRVAEVAKAAGVKATIKSLRHYNATQLLAAGVDLRTTAGRLGHGSGG 370

Query: 314 -KTVDQAETYTKGADRIRLGI 333
             T+      T  ADR    I
Sbjct: 371 ATTLRVYAHRTTEADRRAAAI 391


>gi|253571058|ref|ZP_04848466.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251840007|gb|EES68090.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 407

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 45/288 (15%), Positives = 95/288 (32%), Gaps = 37/288 (12%)

Query: 86  SLAVNSRISFESYFDQIIR------KSGDFDYRKITTKHIRSGVESRK----HTPSSAIQ 135
           +   +S   + + +D ++R      K  D  +  +    I       +      P + + 
Sbjct: 127 NRTESSLNGYRNSYDHLVRFLQSQYKLSDIPFAALDRSFIEKFDLHLRTECHLAPGTIVN 186

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----Q 191
               ++ +   A+    +   P +  E P       +  T E++ +  +     S     
Sbjct: 187 LTVRLKTIVGEAIADGIITAFPFVGYE-PTHPQSEQKYLTTEELNRIMTT-PLHSRTLYH 244

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHL---QNNIFSIKTQKTGTIITVELP-DGFM----- 242
            R  F F  Y+G+  SD C    ++L   ++ I+ I++ +  T +  E+P          
Sbjct: 245 VRDLFLFSCYTGIPYSDMCMLTNENLSLAEDGIWWIRSSRKKTGVDFEIPLMELPLHIIE 304

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATIS-AD 299
           K   + P GK     +N       +  + + K  A   G+ +    H  R   AT     
Sbjct: 305 KYRDVAPEGKLLPMYSN-------SSLNHYLKQIAVLCGIERKLVFHVARHTYATEITLS 357

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
            G     +    G   +   + Y K  D       +++ +   +    
Sbjct: 358 HGVPLETVSKMLGHSRIGTTQLYAKVTDNK--IDTDTKALDKKIAERF 403


>gi|331652395|ref|ZP_08353414.1| integrase [Escherichia coli M718]
 gi|331050673|gb|EGI22731.1| integrase [Escherichia coli M718]
          Length = 411

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 44/314 (14%), Positives = 87/314 (27%), Gaps = 65/314 (20%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHIRSGVE---- 124
           T   L   + K      L  N+    +S    +            I    I +       
Sbjct: 82  TFGELCDIWTKIKE-TELTTNTMKKTKSQLKTLRIIICESTPISHIRYSDILNYRNELLH 140

Query: 125 ------------SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
                        +  T  +   ++  +  L ++A +  +++  P   V++ +R      
Sbjct: 141 GETLYLDNPRSNKKGRTVRTVDNYIALLCSLLRFAYQSGFISTKPFEGVKKLQRNRIKPD 200

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
           P +K +           SQ    ++F +YSGLR  +      + +      +  ++  TI
Sbjct: 201 PLSKTEFNALMESEKGQSQN--MWKFAVYSGLRHGELAALAWEDVDLEKGIVNVRRNLTI 258

Query: 233 ITVELPDG----------FMKLLAMTP-----IGKE-----TFFINNDKQK--------- 263
           + +  P                L          G       TF+     +          
Sbjct: 259 LDMFGPPKTNAGIRTVTLLQPALEALKEQYKLTGHHRKSEITFYHREYGRTEKQKLHFVF 318

Query: 264 ------------MNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMA 309
                        + +     + A   +AG+ +    H  R   A     AGA    + +
Sbjct: 319 MPRVCNGKQKPYYSVSSLGARWNAAVKRAGIRRRNPYHT-RHTFACWLLTAGANPAFIAS 377

Query: 310 TYGWKTVDQA-ETY 322
             G +T     E Y
Sbjct: 378 QMGHETAQMVYEIY 391


>gi|242348058|ref|YP_002995619.1| phage integrase family protein [Aeromonas hydrophila]
 gi|242348136|ref|YP_002995696.1| phage integrase family protein [Escherichia coli]
 gi|224831725|gb|ACN66857.1| phage integrase family protein [Escherichia coli]
 gi|224831877|gb|ACN67008.1| phage integrase family protein [Aeromonas hydrophila]
          Length = 334

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 39/283 (13%), Positives = 102/283 (36%), Gaps = 32/283 (11%)

Query: 88  AVNSRISFESYFDQIIRKSG-----DFDYRKITTKHIRSGVESRKHT---PSSAIQFLTS 139
           +  SR +  S+ + + +  G     D  +  +   H+++ ++    +   P++   +L +
Sbjct: 53  SKRSRQTMGSFLNIVAKMIGFQNLRDCAWSSMRRHHVQAVIQILSDSDRAPATINTYLAA 112

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGI----RPWTKEDMQQFK-----SFWSEGS 190
           ++ +   A   + +  +    +++ +          R   K +++           S+G 
Sbjct: 113 LKGVALEAWTMKQIDTDSYQHIKQVRSVRGSRLPNGRALEKHEVRALYFTCENDRSSKGL 172

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE-LPDG----FMKLL 245
           +       L+  GLR S+     ++ +     +++    G    +  +PDG     M+ +
Sbjct: 173 RDAAILAVLVGCGLRRSEVVALDMECVITREQALRVLGKGNKERIAYVPDGAWQRLMRWV 232

Query: 246 AMTPIGKETFFINNDKQ-------KMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATIS 297
                 +        ++       +M         + +  +AG+ K + H +R+  A+  
Sbjct: 233 NEVRGEQPGALFQRIRRFDDVTADRMTDQAIYHILETRRIEAGLEKFAPHDLRRTFASAM 292

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
            D G     +    G  +V   + Y +  D      + SRR+ 
Sbjct: 293 LDNGEDIITVKDAMGHASVTTTQKYDRRGDERLK--QASRRLE 333


>gi|330861672|emb|CBX71848.1| prophage DLP12 integrase [Yersinia enterocolitica W22703]
          Length = 281

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 43/241 (17%), Positives = 86/241 (35%), Gaps = 24/241 (9%)

Query: 103 IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSV 161
            +         +  K    G   ++ +P++  Q L+ +R L + A  + +++A  P   +
Sbjct: 13  RQIWESKRDAALRKKKPIPGYVEKQVSPATRSQHLSFIRSLLRAAADEWKWLAKAPV--I 70

Query: 162 ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN- 220
           +  K ++  IR  TK++     +   E  +P + F     +GLR S+        +    
Sbjct: 71  KTRKPQSRRIRWLTKDEAVTLINCMPENFRPVVVFALA--TGLRRSNILDLEWSQIDMQR 128

Query: 221 ---IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI-------------NNDKQKM 264
                  +  K G  I V L D   K+L         +                 + +KM
Sbjct: 129 KVAWIHPENAKAGKAIGVALNDMSCKVLREQIGRHSRYVFVHTSAWHRADGTKTAEVRKM 188

Query: 265 NATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
                + W +    ++G+ +   H +R   A+    AG     L    GW++++    Y 
Sbjct: 189 RVDDNTAW-RNGLKRSGITDFRFHDLRHTWASWLVQAGVPLSALQEMGGWESIEMVRRYA 247

Query: 324 K 324
            
Sbjct: 248 H 248


>gi|331699559|ref|YP_004335798.1| integrase family protein [Pseudonocardia dioxanivorans CB1190]
 gi|326954248|gb|AEA27945.1| integrase family protein [Pseudonocardia dioxanivorans CB1190]
          Length = 261

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 65/219 (29%), Gaps = 6/219 (2%)

Query: 108 DFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167
           D     +T   +     S + + SS   +   +   ++W V   ++ I+P   + RP+ +
Sbjct: 8   DGPLLDVTPDALDRWQSSLRVSMSSIATYTNHVVAFYRWMVEAGHLDIDPASRLPRPRIE 67

Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG---VQHLQNNIFSI 224
           +   RP  + D++       E            Y GLR  +  +     V  +   +   
Sbjct: 68  SRSARPIPQADLKLALECAPE--PMFTWLVLSAYMGLRAMEVAQIRNEDVADIDGRLVLS 125

Query: 225 KTQKTGTIITVELPDGFMKLLAM-TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
              K G    + +P G   +L     +     +       + A   S          G+ 
Sbjct: 126 GIGKGGKAYRLPVPKGVDPILRKHLGVRSGPLWRTARGTPIRADYLSHLVAQYFESIGMT 185

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
            + H  R F  T +                 +      Y
Sbjct: 186 YTLHWCRHFFGTTAYRQTRDLLLTQELMRHSSPSSTRLY 224


>gi|315608671|ref|ZP_07883651.1| integrase [Prevotella buccae ATCC 33574]
 gi|315249640|gb|EFU29649.1| integrase [Prevotella buccae ATCC 33574]
          Length = 409

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 42/254 (16%), Positives = 84/254 (33%), Gaps = 23/254 (9%)

Query: 90  NSRISFESYFDQIIRKSG--DFDYRKITTKHIRSG----VESRKHTPSSAIQFLTSMRVL 143
             R++ +   + I +K    D  + ++T   I       +    +  S+  +    ++ +
Sbjct: 136 AYRLTRKRLQEFIQKKYNVSDLAFSQLTENFIYELQTFCLGELGYQQSTFFRVAADLKTV 195

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-----FKSFWSEGSQPRLAFEF 198
            + A R+         +V   +   +  +   KE + +     F     E    R  F F
Sbjct: 196 CRLAYREGLADTLLFDNVHIERGDKKTPKALDKEALDKLKALRFDELEEEMETTRDVFLF 255

Query: 199 LLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE 253
             Y+G    D    G +HL  +           QKTG +  ++L    ++L+      + 
Sbjct: 256 ACYTGAAYCDLMMLGKKHLVRDDNGSLWLKFNRQKTGVLCRIKLLPEAIRLIEKMHSDER 315

Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS-ADAGATAHELMAT 310
              +      +    +    KA   + G+    + H  R   AT+   + G     +   
Sbjct: 316 ETLL----PFIKYPAYQSCLKALRLRTGISFPFTTHTARHTFATLITLEQGVPIETVSKM 371

Query: 311 YGWKTVDQAETYTK 324
            G   V   E Y K
Sbjct: 372 LGHTNVCMTERYAK 385


>gi|114328726|ref|YP_745883.1| site-specific tyrosine recombinase XerC [Granulibacter bethesdensis
           CGDNIH1]
 gi|114316900|gb|ABI62960.1| integrase/recombinase (XerC/CodV family) [Granulibacter
           bethesdensis CGDNIH1]
          Length = 300

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 46/244 (18%), Positives = 81/244 (33%), Gaps = 25/244 (10%)

Query: 111 YRKITTKHIRSGVES---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL-SVERPKR 166
             ++     R+ + S   +    ++  + L S+R  F + +RQ +   N  L  +  PK 
Sbjct: 52  LGRLGLSDFRAWLASEAVKGAGNATRARHLASIRSFFHF-LRQRHALENSALPLLRTPKA 110

Query: 167 KTEGIRPWTKEDMQQFKSFWSEG-------SQPR--LAFEFLLYSGLRCSDSCRAGVQHL 217
           K    R    +  Q   +    G       +Q R    F  L   GLR  ++    V   
Sbjct: 111 KPPLPRAL--DQTQALAAARDIGEASENPFTQARDTALFALLYGCGLRLGEALGLMVGDS 168

Query: 218 QNNIFSIKTQKTGTIITVELPDGFMKLL------AMTPIGKETFFINNDKQKMNATQFSI 271
           Q++   I T K G    V +       L         P      F+     ++N      
Sbjct: 169 QHDTLRI-TGKGGRQRMVPVIPSVRTSLSDWLRFHPVPEASAPLFVGVRGARLNPGVAQR 227

Query: 272 WFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             +   T   +  + + H +R   AT    AGA    +    G  ++   + YT+     
Sbjct: 228 TLRQFRTLYNLPEHATPHALRHSFATHLLAAGADLRAIQDLLGHASLSTTQRYTQVDQAQ 287

Query: 330 RLGI 333
            L +
Sbjct: 288 LLAV 291


>gi|312891747|ref|ZP_07751255.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
 gi|311295778|gb|EFQ72939.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
          Length = 381

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 53/303 (17%), Positives = 103/303 (33%), Gaps = 44/303 (14%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD--YRKITTKHIRSGV 123
           K P      +  +RK+  + +L + S    +    ++ R   D    + +I+ K I+   
Sbjct: 63  KAPEDFFAFVEMHRKTL-YENLKIGSIRRCDGVVAKLKRFCNDEPLFFDEISVKFIQDFH 121

Query: 124 ESRKHTPSS-AIQF---LTSMRVLFKWAVRQEYV--AINPCLSVERPKRKTEGIRPWTKE 177
           +       + A      L  +R +  +AV +E +    NP   ++    KT+  R +  +
Sbjct: 122 QHLSDKLHNQANTIHSNLKVIRKMVIYAVNEEMMPAEKNPFNKIKLKGEKTK--RAFLLD 179

Query: 178 DMQQFKSFWSEGS-----QPRLAFEFLLYSG-LRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
           D  +                R  + F  YSG +R SD      ++        + +KT  
Sbjct: 180 DELERLEKLELEELSMLNHHRNLYVFSAYSGGVRISDLLMMRWENFDGEHLFFQIRKTKE 239

Query: 232 IITVELPDG---FMKLLAMTPIGKE--------TFF-------------INNDKQKMNAT 267
            ++++LP      +         K         +F              +   K   +AT
Sbjct: 240 DLSIKLPKKSLNLLSFYRAFAKKKSIGSDIEPRSFIFPLLRIDKDETDELRIFKAISSAT 299

Query: 268 QFSIW-FKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            ++    +    +A ++K  S H  R   A  +   G     +    G  +V Q E Y K
Sbjct: 300 AYTNKNLRQLIKRAKIDKEISFHTARHSWAVRALQKGMRIEYVSKLMGHASVKQTEVYAK 359

Query: 325 GAD 327
             +
Sbjct: 360 ILN 362


>gi|309776099|ref|ZP_07671090.1| site-specific recombinase, phage integrase family
           [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916050|gb|EFP61799.1| site-specific recombinase, phage integrase family
           [Erysipelotrichaceae bacterium 3_1_53]
          Length = 352

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 49/308 (15%), Positives = 102/308 (33%), Gaps = 15/308 (4%)

Query: 18  HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISE 77
            G  +YY  +  G            F      AL          N   +   T   +   
Sbjct: 24  RGASVYYIDEETGELKEKRK--SLGFFSTRKEALHALEKYHRERNLLSRDDATFAEIYER 81

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFL 137
           + +   + ++  ++  ++E  FD +          ++    ++  ++       +     
Sbjct: 82  WWQE-KFPTVRESTVYTYEHAFD-LCGALHKRLISELRLSDLQEIIDKSNKNYPTLKTMK 139

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM--QQFKSFW-SEGSQPRL 194
             M  +F +AV+ + V  N    V+  + K +      ++    +Q KS W +   +   
Sbjct: 140 ILMIQVFNYAVKYDLVLKNYATYVDIGRYKNKNPNKMERDKFSHEQVKSLWNTVECKYDY 199

Query: 195 AFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIIT-VELPDG----FMKLLAM 247
               LLY+G+R S+         HL    F +K  KT   I  V + D     F +    
Sbjct: 200 ISLMLLYTGVRISELLNLEKVNVHLYEQYFFVKESKTDNGIRKVPIHDKILPFFEEWYNS 259

Query: 248 TPIGKETFFINNDKQKMNA-TQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHE 306
           +P   +    + +  K+        ++K   TK  +  + H  R    ++ ++ G     
Sbjct: 260 SPEDYKYLLYDKEFTKLTYIEYVRKYYKPLMTKLDITLTPHCCRHTCISMMSEKGVDPTY 319

Query: 307 LMATYGWK 314
           +    G  
Sbjct: 320 IKLIVGHS 327


>gi|300690641|ref|YP_003751636.1| phage integrase [Ralstonia solanacearum PSI07]
 gi|299077701|emb|CBJ50337.1| putative phage integrase [Ralstonia solanacearum PSI07]
          Length = 415

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 55/320 (17%), Positives = 103/320 (32%), Gaps = 33/320 (10%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           R RH +      +G                 A +SA  G             K  +LKW+
Sbjct: 70  RDRHAEYRAMVERGEDPAAHRREEKAERTARAELSADEGQL-----------KAFSLKWI 118

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQII-RKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
                            R    S  ++ +    G      +   H+ + +E  + TP++A
Sbjct: 119 ------DERLAGKTEGYRKQIRSRLERFVWPAIGRKALEDVKPAHVLAIIEELRATPNTA 172

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR--KTEGIRPWTKEDMQQF-KSFWSEGS 190
               + ++  + +A+++  V  NP   +       K E  R  ++ ++  F ++   +G+
Sbjct: 173 EGVRSIIQQCYDYAIQKLLVESNPARPLRGVITVPKAEHHRHLSESELGAFWRALGRQGA 232

Query: 191 QPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIITVELPDGFMKL 244
            P    A   L+YS  R ++  RA       +           K+     V L    +++
Sbjct: 233 HPSTTAAARLLMYSMCRKNEVLRAKWAEFDFDKAQWNIPAERMKSRRPHRVYLSRQALEV 292

Query: 245 L---AMTPIGKETFFINND--KQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISAD 299
           L        G E  F +       +     +  FK     A    S HG R  +AT+  +
Sbjct: 293 LEVQRAVSGGYEYVFPSPSIPTVPLADATLNHLFKRLDFGA-PEFSPHGTRGTAATLLRE 351

Query: 300 AGATAHELMATYGWKTVDQA 319
            G +   +          Q 
Sbjct: 352 HGFSRDVVELLLAHTERSQT 371


>gi|222110465|ref|YP_002552729.1| integrase family protein [Acidovorax ebreus TPSY]
 gi|221729909|gb|ACM32729.1| integrase family protein [Acidovorax ebreus TPSY]
          Length = 418

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 47/307 (15%), Positives = 102/307 (33%), Gaps = 34/307 (11%)

Query: 50  ALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGD 108
           AL     KR   ++      T +WL            +A ++R   +S  D+ I+    +
Sbjct: 83  ALEKQREKRRLTSAKNFGDMTSQWLAGA--------RMADSTRAMRKSIVDRDILPAFQN 134

Query: 109 FDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
               ++T   +R+     K    P++A+     ++ ++ +A+       NP   V     
Sbjct: 135 RLLNEVTADDLRALCGKVKGRGAPATAVHIRDIVKQVYAFAILHGEKVDNPAADVGAASI 194

Query: 167 KT--EGIRPWTKEDMQQF-KSFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221
            T     R  +  +++   +   S  + P  RLA   +L + +R S+   A    +    
Sbjct: 195 ATFVPKDRALSPLEIRLMSRQMESVATYPTIRLALRMILLTLVRKSELIEATWDEVDFEN 254

Query: 222 FSIK----TQKTGTIITVELPDGFMKLLAMTPI--GKETFFINNDK------QKMNATQF 269
            +        K      + L    + +L           F + +              + 
Sbjct: 255 ATWTIPKQRMKGRNPHVIYLSRQALDILVALHTCAAGSKFVLPSRYDSDHCMSHATLNRV 314

Query: 270 SIWFKAKATKAGVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKG 325
           +     +A  AG+     + H +R+  +T+  + G     +      +    +   Y K 
Sbjct: 315 TQIVAQRAKAAGLPLEPFTVHDLRRTGSTLLNEIGFNRDWIEKCLAHEEGRSSRSIYNKA 374

Query: 326 --ADRIR 330
             A++ R
Sbjct: 375 EYAEQRR 381


>gi|198243118|ref|YP_002216741.1| phage integrase [Salmonella enterica subsp. enterica serovar Dublin
           str. CT_02021853]
 gi|197937634|gb|ACH74967.1| phage integrase [Salmonella enterica subsp. enterica serovar Dublin
           str. CT_02021853]
 gi|326624498|gb|EGE30843.1| phage integrase [Salmonella enterica subsp. enterica serovar Dublin
           str. 3246]
          Length = 341

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 38/268 (14%), Positives = 73/268 (27%), Gaps = 37/268 (13%)

Query: 83  HWGSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGVESRKH----------- 128
            W  L   +    +    +   I    GD    ++T        E+R             
Sbjct: 67  QWHLLYGQTLADPKRLMAKRSIICNGLGDPIASELTAGDFTKYREARLKGEVKNEDGVLM 126

Query: 129 ---TPSSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
               P +      ++  +F    +   + A NP   +   K     +     E++++   
Sbjct: 127 SPVKPRTVNLEQRNLSSVFGTLKKLGHWSAPNPLAGLPTFKIAEGELAFLAPEEIKRLLD 186

Query: 185 FWSEGSQPRLAF--EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
             ++   P L    +  L +G R S++       L     +    K     TV +     
Sbjct: 187 ACADSQSPSLLMIAKVCLATGARWSEAENLQGHQLSKYRITYTKTKGKKNRTVPISQDLY 246

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV----NKSAHGVRKFSATISA 298
           + L             N  +          F+    +AG+     +  H +R   A+   
Sbjct: 247 EELPK-----------NRGKLFTP--CRKAFERAVKRAGIELPEGQCTHVLRHTFASHFM 293

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGA 326
             G     L    G   +     Y   A
Sbjct: 294 MNGGNILVLRDILGHADIKMTMVYAHFA 321


>gi|262393940|ref|YP_003285794.1| integron integrase IntI4 [Vibrio sp. Ex25]
 gi|262337534|gb|ACY51329.1| integron integrase IntI4 [Vibrio sp. Ex25]
          Length = 320

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 66/213 (30%), Gaps = 52/213 (24%)

Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225
            + +     T+E++++F        + +L  + L  SGLR  +  R  VQ +  +  +++
Sbjct: 98  TEKKLPVVLTREEIRRFVQHIDP--RYKLHIQLLYGSGLRVMECLRLRVQDIDYDYGAVR 155

Query: 226 --TQKTGTIITVELPDGFMKLLAMTPIGKETFFINND----------------------- 260
               K G   TV L     + L         ++  +                        
Sbjct: 156 VWQGKGGKNRTVTLAKELHEPLKAQVNLARDYYFKDRHMPGYAGVYISEGLRRKYPKAEL 215

Query: 261 -----------------------KQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSAT 295
                                  +  +N +      K  AT A + K+   H +R   AT
Sbjct: 216 DFNWHFLFPSTKLSTDRDTGELRRHHINESAIQRAVKRAATDACIEKTVTCHTLRHSFAT 275

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADR 328
              ++GA    +    G   V   + YT   +R
Sbjct: 276 HLLESGADIRTVQEQLGHTDVKTTQIYTHVIER 308


>gi|77918979|ref|YP_356794.1| site-specific recombinase XerD [Pelobacter carbinolicus DSM 2380]
 gi|77545062|gb|ABA88624.1| site-specific recombinase XerD [Pelobacter carbinolicus DSM 2380]
          Length = 333

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 49/308 (15%), Positives = 94/308 (30%), Gaps = 65/308 (21%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG-DFDYRKITTKHIRSGVESRKH---- 128
           L+ + R+   +   A  +  ++  +  + IR        + +    I S +         
Sbjct: 15  LMDQVREVLRYHHYAYRTEQNYCQWIVRFIRFFDAKIHPKDMGKGEIESFLSHLATEGNV 74

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV---ERPKRKTEGIRPWTKEDMQQFKSF 185
           + ++  Q L ++  L+K  + Q      P   +    R KRK       ++ ++Q+  + 
Sbjct: 75  SAATQRQALNAIIFLYKRVLDQ------PVDEILEHIRAKRKRRPPIVLSQGEVQKVLNQ 128

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMK 243
            + G+   L  + L   GLR  +  R  +Q    + N+  ++  K G   T   P    +
Sbjct: 129 MT-GTH-LLMTQLLYGGGLRLMECIRLRIQGLDFERNLIYLRDGKGGKDRTTIFPASMKR 186

Query: 244 LLAM------------TPIGKETFFI---------------------------------N 258
            L                 G  T F+                                  
Sbjct: 187 ALQKHVEKVKQLHEQDLADGYGTVFLPHALAKKYPKAPQEFGWQYLFPARGRSTDPRSGK 246

Query: 259 NDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTV 316
             +  +  +      K    +AG++K    H  R   AT   + G     +    G   V
Sbjct: 247 IRRHHVLESGLQKAVKVAVNRAGIHKRVGCHTFRHSFATHLLENGVNIRVVQELMGHADV 306

Query: 317 DQAETYTK 324
              E YT 
Sbjct: 307 KTTEIYTH 314


>gi|163759730|ref|ZP_02166815.1| site-specific recombinase, phage integrase family protein [Hoeflea
           phototrophica DFL-43]
 gi|162283327|gb|EDQ33613.1| site-specific recombinase, phage integrase family protein [Hoeflea
           phototrophica DFL-43]
          Length = 364

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 46/339 (13%), Positives = 103/339 (30%), Gaps = 36/339 (10%)

Query: 15  RTRHGKIIYYFRKGHGR---RIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
           +TR G      R+         RL                 G  PKR+      ++  T+
Sbjct: 6   KTRQGHWRAQVRRKGKYVSNTFRLKTQAHEWVRDIEHLIDIGGEPKRQ----SGRRAQTV 61

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR---SGVESRKH 128
             L+  + +      +    R S  +  + + R  G     ++    +        +   
Sbjct: 62  GALVDLHLE--DLKEVGRAIRRSKMAVMEALKRDLGTVRIDRLDRARLIQYGKQRAAEGA 119

Query: 129 TPSSAIQFLTSMRVLFKWA-------VRQE--YVAINPCLSVERPKRKTEGIRPWTKEDM 179
            P +    L+ +R +   A       V  E   +A      +    R  E  R  T++++
Sbjct: 120 GPVTLAVDLSYLRTVLTHAAAVHGVHVDTESIRLARTALARLGLVGRSHERDRRPTEDEI 179

Query: 180 QQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKT---- 229
                ++   +           F + + +R  + C+     +     + +I+ +K     
Sbjct: 180 DALLGYFDNKTNMIIPMGRIVRFAIATAMRQEEVCKIEWSDVDLSKRVVTIRNRKDPRNK 239

Query: 230 -GTIITVELPDGFMKLLAMTPIGKETFFINNDKQ--KMNATQFSIWFKAKATKAGV-NKS 285
            G    V L +    + A   + ++        +    ++      F+      G+ +  
Sbjct: 240 EGNHQKVPLLN-LTGIDAWQLLLEQKVLTGGIGRCFPYHSKSVGTAFRRARKHLGIEDLR 298

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            H +R  + +   +AG +   +    G K       YT 
Sbjct: 299 FHDLRHEATSRLFEAGLSIERVALVTGHKDWKMLRRYTH 337


>gi|218778138|ref|YP_002429456.1| integrase family protein [Desulfatibacillum alkenivorans AK-01]
 gi|218759522|gb|ACL01988.1| integrase family protein [Desulfatibacillum alkenivorans AK-01]
          Length = 391

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 45/313 (14%), Positives = 88/313 (28%), Gaps = 39/313 (12%)

Query: 47  YMSALTGSTPKREYINS-----PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ 101
           Y  A      +    +      PR   TT   +   Y       +L   S    E    +
Sbjct: 59  YDRARAAEGKRLAQKSEGTILDPRDAKTTFDQVTEWYLDLESVQAL--RSLQRVEDCLKR 116

Query: 102 IIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158
             +  G      I   ++      R     +P++    L     +   A   + +     
Sbjct: 117 FNQVFGLTPVNSILNVNLEQYQGDRLKAGASPATVDMELRIAHTMINKAFDNDIITE--A 174

Query: 159 LSV--------ERPKRKTEGI-RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDS 209
             V        +  K       R  + E+  +     + GS  +       ++G+R  + 
Sbjct: 175 SKVLKAFRRTKKLLKSGQNARDRLLSMEEYIKL--HEAAGSHLKEIIAIAFFTGMRRGEI 232

Query: 210 CRAGVQHLQNNIFSIKTQ----KTGTIITVELPDGFMKLL--AMTPIGKETFFINNDKQK 263
                 H+  N+  I+      K     ++ L +  M++L     P  ++  F+    + 
Sbjct: 233 LGLKWPHIDFNMKMIRLSAEETKEAKPKSIPLSEKAMEILEQKKRPKKEKHVFL-YRGKP 291

Query: 264 MNATQFSIWFKAKATKAGVNKS--------AHGVRKFSATISADAGATAHELMATYGWKT 315
           +     +  +     KAG++           H +R    T    AG          G   
Sbjct: 292 ITTRVRTALW-NACDKAGISYGRKQENGFVFHDLRSTVKTNMLRAGVDKVMRDIILGHAL 350

Query: 316 VDQAETYTKGADR 328
                 Y K  D+
Sbjct: 351 KGMDRYYLKPNDK 363


>gi|154500417|ref|ZP_02038455.1| hypothetical protein BACCAP_04089 [Bacteroides capillosus ATCC
           29799]
 gi|150270769|gb|EDM98061.1| hypothetical protein BACCAP_04089 [Bacteroides capillosus ATCC
           29799]
          Length = 231

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 33/217 (15%), Positives = 65/217 (29%), Gaps = 24/217 (11%)

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196
           +  +   F+ A +++ +  NP      PK +   ++   +E ++ +     +       F
Sbjct: 1   MAMLHSAFERARKEKLIVANPTEDCIAPKPRKIEMKILPQEHIRAYLDAARD-CDLLPMF 59

Query: 197 EFLLYSGLRCSDSCRAGVQHLQ----------------NNIFSIKTQKTGTIIT-VELPD 239
              L SGLR  +        L                 +    +   KT   +  V +P 
Sbjct: 60  YLELVSGLRKGELVALRWDDLDAEQRTISVSKQYVRNPDGSLELTRPKTENSVRLVSIPQ 119

Query: 240 GFMKLL---AMTPIGKETFFIN-NDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSA 294
             + LL             F +    +  +        K     AG+ +   H +R   A
Sbjct: 120 VAVDLLIQEHEKHPDNPYMFPSPITGEMYHPDSVVNLHKKLLKDAGLEHLRFHDLRHTFA 179

Query: 295 TISADAGATAHELMATYGWKTVD-QAETYTKGADRIR 330
           T +   G     + +  G         TYT    + +
Sbjct: 180 TTALQNGVDVKTVSSMLGHYDAGFTLRTYTHATRQKQ 216


>gi|227821734|ref|YP_002825704.1| DNA integration/recombination/invertion protein [Sinorhizobium
           fredii NGR234]
 gi|227340733|gb|ACP24951.1| DNA integration/recombination/invertion protein [Sinorhizobium
           fredii NGR234]
          Length = 429

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 54/376 (14%), Positives = 116/376 (30%), Gaps = 51/376 (13%)

Query: 11  VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSAL-------TGSTPKREYINS 63
           + +        + Y   G  R++ L      +   A   A         G  P  E    
Sbjct: 35  IVQTTGVKSWAVRYRHAGKPRKMTLGGFPAISLSDAREEARKALRMVSEGRDPATEKAEQ 94

Query: 64  PRKKPTTLK---WLISEYR-KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119
             K+P  +     L+ E+  +     +     R S       +  K      + +T + +
Sbjct: 95  EPKRPAHMDLMPALLDEFVTRHVAVKNRPSYVRESKRIVEKNLKPKWKQKLVKTVTKRDV 154

Query: 120 RSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
              ++    + +P  A +    +   F WA+ ++ V  +P +S++ P  +    R  T E
Sbjct: 155 LKLLDEIVDRGSPIMANRVRALLSKFFAWAMERDIVDASPVVSIKAPSEEKTRDRILTDE 214

Query: 178 DMQQF-KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN------IFSIKTQKTG 230
           +++    +            + LL +  R ++   A    L+        + S+   K  
Sbjct: 215 EIRFLWLAAEKLAYPFGPVVKLLLLTAQRRTEVSDALWDELELEGNNQLWVISVDRAKNK 274

Query: 231 TIITVELPDGFMKLLAMTPIGKE---------TFFINNDKQKMNATQFSI------WFKA 275
               V L    ++++   P  K            F    K  ++    +           
Sbjct: 275 KEHFVPLTASALEIIEGLPKIKPAEDEKAKPIYLFTTTGKTPVSGFSKAKTQLDGEMLAI 334

Query: 276 KATKA--------GV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ---AET 321
              +A        G+     + H +R+ +A+  A      H + A    ++      A  
Sbjct: 335 ARKEAEERGEDPEGISIEPWTYHDLRRTAASGMARLSVPVHIVEAVLNHRSGSIKGVAAV 394

Query: 322 YTK--GADRIRLGIKN 335
           Y +   A+  R  +  
Sbjct: 395 YNRYDYAEEKRAALTA 410


>gi|330965931|gb|EGH66191.1| phage-related integrase [Pseudomonas syringae pv. actinidiae str.
           M302091]
          Length = 402

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 47/311 (15%), Positives = 105/311 (33%), Gaps = 30/311 (9%)

Query: 52  TGSTPKREYINSPRKKPT--TLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGD 108
            G +P +E   +  +     T      ++ +      +A ++R    S +++ +    G+
Sbjct: 78  AGKSPAKEKARAKARIKGAETFDAWAEKWLRGYQ---MADSTRDMRRSVYERELKPHFGN 134

Query: 109 FDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
               +I  + +R+  ++   +  P++A+     +  +F+WA+ +     NP   V     
Sbjct: 135 QKLVEINHEDLRTLTDAIVERGAPATAVHSREIVMQVFRWAIERGQKVENPADLVRPASI 194

Query: 167 KT--EGIRPWTKEDMQ---QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221
                  R    +++    Q+          R A + LL + +R S+   A    +  + 
Sbjct: 195 AKFEPRDRALGPDEIALMYQYLDRIGTACSVRAAAKLLLLTMVRKSELTNATWSEINFSE 254

Query: 222 FSIK----TQKTGTIITVELPDGFMK---LLAMTPIGKETFFINNDKQ--KMNATQFSIW 272
                     K      V L    +     L     G +  F +       M+    +  
Sbjct: 255 ALWTIPKERMKRRNPHLVFLSQQALDFFIALKTFAGGSDYVFPSRYDSDLPMSTATINQV 314

Query: 273 FK---AKATKAGVNKS---AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG- 325
                  A K G   S    H +R+ ++T+  +AG  +  +      +       Y K  
Sbjct: 315 LTLSYRLAQKEGQPLSKFGPHDLRRTASTLLHEAGYNSDWIEKCLAHEQKGVRAVYNKAE 374

Query: 326 -ADRIRLGIKN 335
             D+ R  +++
Sbjct: 375 YRDQRRAMLQD 385


>gi|323487455|ref|ZP_08092750.1| hypothetical protein HMPREF9474_04501 [Clostridium symbiosum
           WAL-14163]
 gi|323399224|gb|EGA91627.1| hypothetical protein HMPREF9474_04501 [Clostridium symbiosum
           WAL-14163]
          Length = 418

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 57/323 (17%), Positives = 103/323 (31%), Gaps = 53/323 (16%)

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRSGVES 125
           K  T+  L ++Y +    G++   ++ S +     +   K G      +     +     
Sbjct: 85  KKMTVCQLYAKYIR--QRGNVKRGTQKSRQQLMKLLEEDKLGAASIDSVKLSDAKEWALR 142

Query: 126 RKHTPSSAIQF---LTSMRVLFKWAVRQEYVAINPCL-SV-ERPKRKTEGIRPWTKE--- 177
            +    +         S++ +F  A++ +Y+  NP    + E     TE   P T     
Sbjct: 143 MQEKGVAYTTICNSKRSLKAIFYMAIQDDYLRKNPFDFQINEVINDDTEPKVPLTPAQEK 202

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----------------NNI 221
           ++ +F    +  S+       LL +GLR S+ C      L                  + 
Sbjct: 203 ELLKFIQDDTIYSKYYDEVVILLETGLRISELCGLTPADLNFEKRFIHVDHQLLRSTEDG 262

Query: 222 FSIKTQKTGTIIT-VELP----DGFMKLLAMTPIGK--------ETFFINNDKQKMNATQ 268
           + I+T KT +    V +     + F ++L     GK           F+N D     A  
Sbjct: 263 YYIETPKTDSGFRQVPMSAAAYEAFQRVLKNRRGGKAIQVDGYSNFLFLNRDGLPKVAVH 322

Query: 269 FSIWFKAKATKAGVNK----------SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           +   FK        NK          + H +R    T  A+AG     L    G   +  
Sbjct: 323 YDAMFK--CLAKKFNKCHKEPLPSVMTPHTMRHTFCTRMANAGMNPKALQYIMGHSNIIM 380

Query: 319 AETYTKGADRIRLGIKNSRRISS 341
              Y   A       +   R+ +
Sbjct: 381 TLNYYAHATFHS-AQEEMDRLEA 402


>gi|326791447|ref|YP_004309268.1| integrase family protein [Clostridium lentocellum DSM 5427]
 gi|326542211|gb|ADZ84070.1| integrase family protein [Clostridium lentocellum DSM 5427]
          Length = 309

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 45/280 (16%), Positives = 98/280 (35%), Gaps = 19/280 (6%)

Query: 59  EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH 118
             I   + + TT + L   + K     +++  + I +E+ ++ I + + +    +I +  
Sbjct: 2   PKIEMRKHEITTFEELFLHFIKHCKIKNVSPKTIIYYETSYNSICKFNPNIQLDEIDSLL 61

Query: 119 IRSGVESRKHTP--SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
           I+  +   K T   +S    L  +R +  +      +   P + V+  +   E    ++ 
Sbjct: 62  IQDYILYLKQTNNLNSVNTRLKGLRTMLNYGYSINAL---PKIKVQLIRVDKEVKETYST 118

Query: 177 ED----MQQFKSFWSEGSQPRLAFEF--LLYSGLRCSDS--CRAGVQHLQNNIFSIKTQK 228
           E     +++        ++ R       L+ +G R S     + G   + N + +++  K
Sbjct: 119 EQILTLIKKPNVKKCSFAEYRNWMIVHYLVSTGNRLSTLTNIKIGDLDIDNKLVTLRHTK 178

Query: 229 TGTIITVELPDGFMKLL-----AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
                 + L     K L           ++  F   + +++         K      GVN
Sbjct: 179 NRHQQIIPLSSMLCKHLVEYLTYREGTSEDYLFPTVENKQLTKDTLITAIKNYNRSRGVN 238

Query: 284 -KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
             S H  R++ A      G     L    GWK +   + Y
Sbjct: 239 ITSIHAFRRYFAKQCVLNGIDTFTLQKLGGWKDLTVVKNY 278


>gi|239622960|ref|ZP_04665991.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239522612|gb|EEQ62478.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 395

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 47/298 (15%), Positives = 85/298 (28%), Gaps = 56/298 (18%)

Query: 85  GSLAVNSRISFE-SYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMR 141
             LA N+R ++   Y   I    G+     +   H +  +   + T   S+  Q   +M 
Sbjct: 81  ADLAPNTRRNYRERYQKNIQPVIGNMRLCDVKPMHCKIVLNRMEATYAGSTIRQAYIAMG 140

Query: 142 VLFKWAVRQEYVAINPCLSVE--RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199
            +F+ AV  + +  +P   V   +P R  + I+  T E+   F       S     +  L
Sbjct: 141 TMFRAAVMNDMLTKHPMDGVRYTKPVRAVDDIKFLTVEEQTLFLETAKR-SHNYRQYVLL 199

Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-----GTIITVELPDG-------------- 240
           L +GLR S+        +     ++   KT        I    P                
Sbjct: 200 LETGLRTSEMIGLTWDAIDWKKRTLTVNKTLEYRHSEGIWRAGPPKTKTSYRTILLTKRA 259

Query: 241 ---FMKLLAMTPIGKET--------------------------FFINNDKQKMNATQFSI 271
                         KE+                          F      +    + +  
Sbjct: 260 YDVLKSCYDERFTRKESELLSQILEYVDRRTGQTEYLCMRDLVFINFRTGEPAKNSSYDT 319

Query: 272 WFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGAD 327
                  +A + +   H +R   AT + + G     L    G  ++    + Y    D
Sbjct: 320 HLYKLCDEAKIKRFCMHALRHTYATRAIERGVMPKVLQKLLGHASIKTTMDRYVHVTD 377


>gi|325929257|ref|ZP_08190393.1| integron integrase [Xanthomonas perforans 91-118]
 gi|60550151|gb|AAX24163.1| truncated integrase [Xanthomonas perforans]
 gi|60550154|gb|AAX24165.1| truncated integrase [Xanthomonas perforans]
 gi|325540396|gb|EGD12002.1| integron integrase [Xanthomonas perforans 91-118]
          Length = 315

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 42/309 (13%), Positives = 90/309 (29%), Gaps = 60/309 (19%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT---- 129
           L+ + R        ++ +  ++  +  + I  +G     ++    + + +          
Sbjct: 8   LLDQVRGRLRLRHYSLRTEQAYVGWIRRFILANGKRHPGQMGQVEVEAFLTDLATRGQVS 67

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINP-CLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
             +  Q L ++  L++  +  E     P   ++ R KR        + E++ +  +    
Sbjct: 68  AGTQNQALAALLFLYREVLGVEL----PWMENLVRAKRPRRIPVVLSAEEVARLLTMLEG 123

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFM---- 242
               RL    L  SG+R  +  R  ++ +        ++  K G    V  P        
Sbjct: 124 SC--RLMAGLLYGSGMRLLECLRLRIKDVDVVRGEIVVRDGKGGKDRRVPPPHSLRGELM 181

Query: 243 -------------------------KLLAMTPIGK-----ETFFINND-----------K 261
                                     L    P        +  F+              +
Sbjct: 182 QQRERALLLHAADLAEGAGRVFLPHALARKYPNANVEPGWQYLFLAARRSVDPRSGRVGR 241

Query: 262 QKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQA 319
             ++        ++   +AG+ K A  H +R   AT   +AG     +    G K V   
Sbjct: 242 HHVSEEVLQRAVQSARRQAGIAKPATCHTLRHSFATHLLEAGHDIRTVQELLGHKDVTTK 301

Query: 320 ETYTKGADR 328
           + Y     R
Sbjct: 302 QIYAHVLGR 310


>gi|330940076|gb|EGH43262.1| integrase family protein [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 348

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 39/280 (13%), Positives = 86/280 (30%), Gaps = 43/280 (15%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKH---IRSGVESRKHTPSSAIQFLTSMRVLF 144
           A ++  +++   + ++ K G      I        ++ +  +  +P +     T +R ++
Sbjct: 42  ATSTSRNYQYKANHVVDKFGKRRIADINKSDLELFQAQLLKKGLSPKTVNDVFTVVRGVW 101

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGI--RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202
             A     +  NP   ++  +R ++     P+T+E+++      S   Q      F  ++
Sbjct: 102 GDAYADGVLRANPLDRIKNIERDSDEDSADPFTREELEALSKIKSARQQDINMILFDCWA 161

Query: 203 GLRCSDSCRAGVQHLQ--NNIFSIKTQK----------TGTIITVELPDGFMKLLAM--- 247
           GL  S+    G   +        I+  +                VEL D  +  L     
Sbjct: 162 GLSLSELIALGWDDVDLEGGTVMIRRARVETEYKIPKEKSRARRVELIDPAIAYLRAQFE 221

Query: 248 -------------------TPIGKETFFINND--KQKMNATQFSIWFKAKATKAGV-NKS 285
                              T      F   N    +  +A+    WF       GV ++ 
Sbjct: 222 ITGAQPAVPITVVQRDNNSTKRENVRFVFRNGQSGEPWHASSVGRWFAGHLKSVGVRHRG 281

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
            +  R   A+ +  +      +    G        + Y +
Sbjct: 282 PNQCRHTFASQALSSYVPVEWVARQLGHTDTTMVKKHYGR 321


>gi|296284779|ref|ZP_06862777.1| phage integrase [Citromicrobium bathyomarinum JL354]
          Length = 330

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 43/268 (16%), Positives = 73/268 (27%), Gaps = 27/268 (10%)

Query: 92  RISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP-SSAIQFLTSMRVLFKWAVRQ 150
           R+   S    +    G      IT   + S ++       ++       MR LF+WAV +
Sbjct: 50  RLVERSIRLYLKPTFGMKALPAITKIDVVSVLDQMPPKQVANRRNVFAVMRRLFRWAVSR 109

Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF----EFLLYSGLRC 206
             +  NP   +E P       R     ++   +  W+   +    F      L+ +G R 
Sbjct: 110 GDIDRNPMEGMETPPPVKPRERWLKDGEL---RHIWNAAPECHRCFGPIVRLLIVTGQRR 166

Query: 207 SDSCRAGVQHLQNNIFSIK----TQKTGTIITVELPDGFMKLLAMTPIG-----KETFFI 257
            +      Q L  +           K G   ++ L D  +  L     G     K   F 
Sbjct: 167 EEVSGMHWQELSRSERLWTLPGSRTKNGEPNSIPLNDLAIAELDREARGERWPRKGRVFA 226

Query: 258 NNDKQKMNATQFSI-----WFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYG 312
                                + +  +       H +R+  AT     G       A   
Sbjct: 227 TASGAGFTGYAKGKVKLDSLIEERCEEPLEAWRLHDLRRTLATNFQRLGVRFEVTEAVLN 286

Query: 313 W---KTVDQAETYTKG--ADRIRLGIKN 335
                    A  Y +    D  R  +  
Sbjct: 287 HVGGSRAGVAGIYQRHDWKDEKRQALDA 314


>gi|238062907|ref|ZP_04607616.1| phage integrase [Micromonospora sp. ATCC 39149]
 gi|237884718|gb|EEP73546.1| phage integrase [Micromonospora sp. ATCC 39149]
          Length = 477

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 56/371 (15%), Positives = 116/371 (31%), Gaps = 66/371 (17%)

Query: 16  TRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75
           +R G   +YF   H     L    E      Y++       +   +    ++ T+  W +
Sbjct: 30  SRRGHGSWYF---HCSVSTLTGRRERVRRGGYLTRGDAERARDALLARSTEECTSDTWTV 86

Query: 76  SEYRKS--AHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRS---------GV 123
           S + +   +    +  ++  S+  + +  +I   G      +T  H+ +           
Sbjct: 87  SRWLRYWLSTNLGIRPSTLRSYTDHVEHQLIPHLGRHRLTDLTNLHVTATFAHIAETPNR 146

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
             R  TPS+  +   ++R     A+R   +  NP   V   K +    R WT   ++ ++
Sbjct: 147 HGRPPTPSTLHRIRATLRSALNAAIRHGLLRDNPARFVRLAKPRRPQARVWTDHRVKAWR 206

Query: 184 SF-------------------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIF 222
                                 +   +    +  +   GLR  ++       +     + 
Sbjct: 207 DHGERYAVAVWTTQQLAHFLDHTADDRLTAMWWLISLRGLRRGEAAGLRWVDVDLTGRVI 266

Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTP----------------------------IGKET 254
           +I  Q+     TV +          T                                  
Sbjct: 267 TIDQQRIAYGQTVTVGPPKTAASRRTIALDHTTLTILRQHRRRQLTEQTEHAADWTDSGY 326

Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGW 313
            F   D Q ++    +  F+   T++G+     H +R  +AT++  AGA    +    G 
Sbjct: 327 VFTQPDGQPLHPDYLTRRFRRLVTESGLPPVRLHDLRHGAATLAHSAGADLKTVQEQLGH 386

Query: 314 KTVD-QAETYT 323
            ++   A+TYT
Sbjct: 387 TSIVLTADTYT 397


>gi|170732631|ref|YP_001764578.1| integrase family protein [Burkholderia cenocepacia MC0-3]
 gi|169815873|gb|ACA90456.1| integrase family protein [Burkholderia cenocepacia MC0-3]
          Length = 429

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 36/267 (13%), Positives = 78/267 (29%), Gaps = 41/267 (15%)

Query: 101 QIIRKSGDFDYRKITTKHIRSGVES---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINP 157
           ++     D            S       +  + ++  + L ++R LF  AV    VA +P
Sbjct: 139 RVFADFLDHPLNGFNPWMFESWRAKCLDKGLSTATTNRDLAALRGLFSRAVEWGVVAEHP 198

Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFK-SFWSEGSQPRLAFE------------------- 197
             +V+  K  +  +R  + ++  + + +  +   + R A +                   
Sbjct: 199 MRTVKALKESSGKVRWLSDDEEDRLRIALDAREERERSARDSANVWRKARGYELLEDLRT 258

Query: 198 ------------FLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIITVELPDGF 241
                         L +G+R  +  +     +      +     T K+G    + L D  
Sbjct: 259 VPFVDYLKPAVLLSLNTGMRQGELLKLRWGRVDLENSILTVSDETAKSGKQRHIPLNDEA 318

Query: 242 MKLLAMTPIGKETF-FINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISAD 299
           +  L      +  F  +         T     +      A + +   H +R   A+    
Sbjct: 319 LTALKQWRQQQSRFDVVFAGDSGAVRTDVKTAWARLLKDAQIQDFRWHDMRHHFASRLVM 378

Query: 300 AGATAHELMATYGWKTVDQAETYTKGA 326
           AG   + +    G   +     Y   A
Sbjct: 379 AGVDLNTVRELLGHSDMTMTLRYAHLA 405


>gi|156974233|ref|YP_001445140.1| integrase [Vibrio harveyi ATCC BAA-1116]
 gi|156525827|gb|ABU70913.1| hypothetical protein VIBHAR_01948 [Vibrio harveyi ATCC BAA-1116]
          Length = 411

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 41/246 (16%), Positives = 75/246 (30%), Gaps = 48/246 (19%)

Query: 126 RKHTPSSA---IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           R   P SA      +  MR  F  AV+ +++  NP L VE     +    P   E+  Q 
Sbjct: 146 RNGRPRSAKTINNMIKLMRRCFDLAVKSKFIDDNPFLHVELLSGGSGEPDPLELEEFHQL 205

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-------------KTQKT 229
               +   Q R  F   +Y+G+R  + C    + +     +I               +  
Sbjct: 206 IESTT-NLQQRNIFTLAIYTGMRTGELCALAWEDVDLEKGTIEVTRNVTIERKFTTPKNK 264

Query: 230 GTIITVELPDGF-------MKLLAMTPIGK-----------------ETFFINNDKQKMN 265
            +  T+ L            KL  + P+                     F   +   +  
Sbjct: 265 KSERTIHLLQPALLALKSQRKLTMLGPVRDILVEVKGSNTFRQESVQFVFIPEHRNGQET 324

Query: 266 ATQFSI-----WFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
           +  +        +     +AG+ ++ ++  R   A      GA    +    G K+    
Sbjct: 325 SETYKTTTYNRLWSRALKRAGIRHRCSYQSRHTYACWLITKGANLSFIAEQMGHKSTMML 384

Query: 320 ET-YTK 324
           E  Y +
Sbjct: 385 ERVYGR 390


>gi|319425166|gb|ADV53240.1| integrase family protein [Shewanella putrefaciens 200]
          Length = 311

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 40/272 (14%), Positives = 86/272 (31%), Gaps = 31/272 (11%)

Query: 85  GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKH------TPSSAIQ 135
             L++NS+ S  S    I R      D    K+     +  ++ R        +  S  +
Sbjct: 12  SRLSINSQRSISSQMRSIARLMQWQEDCLDDKLCQIDYQQALQIRAMMTHAQWSARSINR 71

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR---PWTKEDMQQFKSFWSE---- 188
            + +++ + K A       ++   +++   +   G     P + E +     +       
Sbjct: 72  AMIAIKNIVKVAALMNKADLSQVANLQTINQVKHGEHQGTPLSTEQVTAVLDYCKTQKGT 131

Query: 189 -GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDG----F 241
             ++  L F   L +GLR S+     +     N+   ++   K     T+ LP+      
Sbjct: 132 FATRNLLIFSLFLGTGLRRSELSALMLSDYDANLHTLTVAAGKGNKSRTLFLPEWVEQNL 191

Query: 242 MKLLAMTPIGKETFFI--NNDKQ-----KMNATQFSIWFKAKATKAGVN-KSAHGVRKFS 293
           +  L +    +           +       + T      K    + GV+  S H +R+  
Sbjct: 192 LAWLKLRQRQQGYLVCKSTLTGKLKLSEPTSPTALYRLVKETLYELGVDNVSPHDLRRTF 251

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKG 325
            T   +     + +    G   +     Y K 
Sbjct: 252 ITRLLEQNVDINTVRQMAGHADISTTTIYDKR 283


>gi|196048146|ref|ZP_03115323.1| phage integrase family protein [Bacillus cereus 03BB108]
 gi|196020883|gb|EDX59613.1| phage integrase family protein [Bacillus cereus 03BB108]
          Length = 348

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 38/277 (13%), Positives = 80/277 (28%), Gaps = 31/277 (11%)

Query: 85  GSLAVNSRISF----ESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSM 140
              +  ++  +      +   I    G           I     S K+  ++  +  T +
Sbjct: 59  KKRSERTKQQYLHDLSHFLRYIKETIGTIQKLSHNDMEIYFYELSNKYAATTLRRKKTVV 118

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEG--IRPWTKEDMQQFKSFWSEGSQ-PRLAFE 197
           +   K+      ++ N    +++   K E    R    E++ Q      + +      F 
Sbjct: 119 QQFLKYVYDNNGLSDNFSSRLKKVSIKKEELVNRDLYPEEVTQILDELKKSNYFVYTIFF 178

Query: 198 FLLYSGLRCSDSCRAGVQHL------QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251
            L  +GLR  +   A    L         +  +  +   +       D    L  +  + 
Sbjct: 179 LLTTTGLRIEEIATAKWADLVFHSSLNAYLLRVVGKGNKSREVRIFEDTLYALYHVRSLR 238

Query: 252 KET----------FFINNDKQKMNATQFSIWFKAKATKAGVN--------KSAHGVRKFS 293
           K+T          F    D     A   S     K  +  ++         + H  R F 
Sbjct: 239 KQTIELDVSNTSAFLPKADGTNYRADYLSSLVAKKIEETNLDFLRYRQDRITPHTCRHFM 298

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
           A    + G    ++    G +++   E Y +   R +
Sbjct: 299 ANYLMEKGIELKKIRDYLGHESIMTTERYLRERTRRQ 335


>gi|291544716|emb|CBL17825.1| Integrase [Ruminococcus sp. 18P13]
          Length = 377

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 49/316 (15%), Positives = 107/316 (33%), Gaps = 43/316 (13%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDF 109
           L  S   +    +P     T+  L  EY  +     +   +  S E  F   I    G+ 
Sbjct: 45  LEASMQAQYTSGAPHSGGMTVSELYEEYVCAKK-HEVRATTLNSLEKNFRLYIAPLIGNV 103

Query: 110 DYRKITTKHIRSGVESRKHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK- 165
              K++ + ++        T     S  Q  T++  +  ++V+  Y+  N    V   K 
Sbjct: 104 KLNKLSARELQCWKNKVDITGLAIGSKKQVYTTLNTILNYSVKIGYIEKNQLKVVGNFKD 163

Query: 166 ----RKTEGIRPWTKEDMQQFKSFWSEGSQP---------RLAFEFLLYSGLRCSDSCRA 212
                 T+ +  +T E   ++     + ++           + F    Y+G+R  +    
Sbjct: 164 PYFQTPTDKLHFYTPEQFVRYIHEARKVAEQSNSLTDWGYFVFFMIAYYTGMRRGEINAL 223

Query: 213 GVQHLQNNIFSIK---------------TQKTGTIITVELPDGFMKLLAMTPIGKETF-- 255
               ++ ++  ++                +   +   +++P+  M++L      +E    
Sbjct: 224 TWDDVEGDVIHVRHSVAQCVDGSDMVTSPKNRSSFRDLQVPEPLMEVLQEHKSRQEQVPG 283

Query: 256 FINN-----DKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMA 309
           F+N+       + +  T      +  A+ AG+     H  R   A++  + G   HE+  
Sbjct: 284 FLNSLYVCGGSRCLRNTSIRAQNQRFASGAGLPFIKVHDFRHSHASLLVNNGINIHEVAR 343

Query: 310 TYGWKTVDQA-ETYTK 324
             G   V     TY+ 
Sbjct: 344 RLGHSNVSITLNTYSH 359


>gi|254713770|ref|ZP_05175581.1| Phage integrase [Brucella ceti M644/93/1]
 gi|254717173|ref|ZP_05178984.1| Phage integrase [Brucella ceti M13/05/1]
 gi|261218989|ref|ZP_05933270.1| phage integrase [Brucella ceti M13/05/1]
 gi|261321511|ref|ZP_05960708.1| phage integrase [Brucella ceti M644/93/1]
 gi|260924078|gb|EEX90646.1| phage integrase [Brucella ceti M13/05/1]
 gi|261294201|gb|EEX97697.1| phage integrase [Brucella ceti M644/93/1]
          Length = 308

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 79/239 (33%), Gaps = 12/239 (5%)

Query: 93  ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEY 152
            SF    D+I++ +    +       I   +  R ++ ++  + + ++  L + A +   
Sbjct: 63  RSFLGEIDEILKGARFSGFDHEMLDSIIGTLRERGNSNATINRKMAALSKLLRKAHKMGD 122

Query: 153 VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY-SGLRCSDSCR 211
           +  N    + R K +   IR   +E+ ++  +      +        L  +G R  ++  
Sbjct: 123 I-FNLPEFI-RQKERVGRIRFLEQEEEKRLFAAIKSRCEDSYRLSVFLVDTGCRLGEAIG 180

Query: 212 AGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI 271
                +Q    +    K+    TV L     K   + P  +    +      +N  +F  
Sbjct: 181 LTWNDIQEQRVTFWVTKSNRSRTVPLTRRARKASHI-PRER----LKGPFSMLNQVRFRQ 235

Query: 272 WFKAKATKAGVNKS----AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            +     + G+        H +R   A+     G     +    G +T+     Y   A
Sbjct: 236 IWNEAKAEVGLGADDQIVPHILRHTCASRLVRGGIDIRRVQMWLGHQTLQMTMRYAHLA 294


>gi|186471690|ref|YP_001863008.1| integrase family protein [Burkholderia phymatum STM815]
 gi|184197999|gb|ACC75962.1| integrase family protein [Burkholderia phymatum STM815]
          Length = 343

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 34/313 (10%), Positives = 88/313 (28%), Gaps = 42/313 (13%)

Query: 66  KKPTTLKWLISEYRKS--AHWGSLAVNSRISFESYF--------DQIIRKSGDFDYRKIT 115
           +KPT L   +  + +        ++V++  S+             +  R     D   + 
Sbjct: 4   RKPTELGRCLLRFFQDYLPTLRGVSVHTIRSYRDAVVLLLQFTARESRRPIEALDLSDLN 63

Query: 116 TKHIRSGV----ESRKHTPSSAIQFLTSMRVLFKWAVRQE---YVAINPCLSVERPKRKT 168
             H++  +      R ++ ++    L ++    ++ + +           L +   +   
Sbjct: 64  ADHVKQFLKFLESERGNSIATRNARLAAIHAFARFVIAEHPEHLAPFQQVLGIPFKRGAR 123

Query: 169 EGI-RPWTKEDMQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN--- 220
           E         ++    +        G +    F  +  +G R  +     +  L+ +   
Sbjct: 124 EAPIEYLETAEIDTLLTTIDQSRPAGQRDFALFALMFNTGARVQEILNLRICDLRLDPPP 183

Query: 221 IFSIKTQKTGTIITVELPDG---FMKLLAMTP-----IGKETFFINNDKQKMNATQFSIW 272
              +  +     +    P       +L+   P       +   F+N    +M+       
Sbjct: 184 QVRLHGKGNKVRVCPIWPRTAQLLRELIRTRPLVAQGSAELPVFVNCRGTQMSRFGVRYL 243

Query: 273 FKAKATKAGV--------NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            +     A              H +R  +A     AG     +    G  +++    Y +
Sbjct: 244 LRKYMLIASTRNPTLAHKEIHPHSLRHTTAIQLLKAGVDFATISQWLGHASLNTTMRYAR 303

Query: 325 G-ADRIRLGIKNS 336
              D  R  +   
Sbjct: 304 ADIDLKRQALAQV 316


>gi|260662141|ref|ZP_05863037.1| integrase [Lactobacillus fermentum 28-3-CHN]
 gi|260553524|gb|EEX26416.1| integrase [Lactobacillus fermentum 28-3-CHN]
          Length = 292

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 33/278 (11%), Positives = 88/278 (31%), Gaps = 24/278 (8%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGVES 125
             L +       W +    ++++  SY   +   +      G  +++++    + + ++S
Sbjct: 6   DALQASLVSYQEWLTKKGGAKLTIASYLTDLRDTAAYLTSRGVTNWQQVDRATLTAYLQS 65

Query: 126 RKHTPS---SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
                    +  + ++S+R  + +      V  +P   ++  +         T ++    
Sbjct: 66  LNDKGRRTTTIQRRISSLRRFYVYLQVTGQVNHDPVALLKAKQTPRLAPVGLTPQEADLL 125

Query: 183 KSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
                       + R     L+ +G R ++        L   +  +   ++   + V L 
Sbjct: 126 PDHVPGKGVARERNRALVALLVATGARANELRDLQTGDLDLELGVVYLGQSSRRL-VPLN 184

Query: 239 DGFMKLL--------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288
           +     L          +   +   F+NN  Q ++         A   +A +    +   
Sbjct: 185 EQAQTYLTTYLTARADQSATDEGYVFLNNRGQPLSRQSIWEIVNATGQRANIEGAVTPQR 244

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           VR   A      GA    +    G +++   + Y + A
Sbjct: 245 VRDGFAYRLLAHGADLSLVQQLMGHQSILTTQVYLEQA 282


>gi|302346838|ref|YP_003815136.1| site-specific recombinase, phage integrase family [Prevotella
           melaninogenica ATCC 25845]
 gi|302151069|gb|ADK97330.1| site-specific recombinase, phage integrase family [Prevotella
           melaninogenica ATCC 25845]
          Length = 410

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 46/272 (16%), Positives = 91/272 (33%), Gaps = 31/272 (11%)

Query: 94  SFESYF-DQIIRKSGDFDY--RKITTKHIRSGVESRKHTPSSAIQF----LTSMRVLFKW 146
               +F + +I K G  D    + T   ++            A       + +++ +  +
Sbjct: 138 VLRRHFSEFLIHKYGRKDVGLTEFTPSVVQDFELYLSTVAGCAYNTSVKKMKALKTVTIY 197

Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ---PRLAFEFLLYSG 203
           A ++ Y+  +P L+  R   +       T E++ +  +      +    R  F F  ++G
Sbjct: 198 AQKRGYLLHDPFLN-HRFHLEPVNRGFLTDEEIMKIANKDLAIQRLELVRDVFIFSCFTG 256

Query: 204 LRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDGFMKLLAMTP-----IGKET 254
           L   D       ++           K QKT     V L D    ++A         GK  
Sbjct: 257 LAYIDVSNLTPDNIVTLDDKQWIMTKRQKTNVETNVLLLDIPKSIIAKYSHKTYRDGKLF 316

Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYG 312
             + N K        + + K  A   GV K  + H  R   AT+S   G     +    G
Sbjct: 317 PILTNQKT-------NAYLKEIADLCGVKKNLTFHLARHTFATMSLSKGVPMESVSKMLG 369

Query: 313 WKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
              +   + Y +  ++      +  +++  +D
Sbjct: 370 HTNIKTTQIYARITNKK--IEHDMEQLAGKLD 399


>gi|255037949|ref|YP_003088570.1| integrase family protein [Dyadobacter fermentans DSM 18053]
 gi|254950705|gb|ACT95405.1| integrase family protein [Dyadobacter fermentans DSM 18053]
          Length = 406

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 45/271 (16%), Positives = 95/271 (35%), Gaps = 32/271 (11%)

Query: 85  GSLAVNSRISFE------SYFDQIIRKSGDFDYRKITTKHIR----SGVESRKHTPSSAI 134
              A  +   ++      + F +   K  D + + +  + I         +R    +SAI
Sbjct: 127 QEFAPLTLKRYKTAKEHTASFIKWKYKKDDMEIKDLNFEFITEFNFWLRSARGCNHNSAI 186

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQ 191
           +++++++ +    V  +++  +P    +  K++     P +++++++           SQ
Sbjct: 187 KYMSNLKKVVLICVNNKWLKKDPFQGFKLTKKEVVKN-PLSRDELKRLTEKVFEVERISQ 245

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVELPDGFMKLLA 246
            R  F F  Y+GL   D  +     +              QKT     + L    + ++ 
Sbjct: 246 VRDIFLFCCYTGLAYVDVKQLKTTDIVVGMDGEPWIDTTRQKTDAPTRIPLLPTALDIIE 305

Query: 247 MTP-----IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSA-TISA 298
                     K         QKMNA     + K  A   G++K  + H  R   A T++ 
Sbjct: 306 KYKEHPQCCNKGVVLPVLSNQKMNA-----YLKEIANLCGISKTLTFHIARHTFATTVTL 360

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRI 329
                   +    G +++ Q   Y K  D  
Sbjct: 361 SNKVPIETVSKMLGHRSLKQTMIYAKILDVK 391


>gi|184154157|ref|YP_001842498.1| phage integrase [Lactobacillus reuteri JCM 1112]
 gi|227363954|ref|ZP_03848055.1| integrase [Lactobacillus reuteri MM2-3]
 gi|325683158|ref|ZP_08162674.1| phage integrase family site-specific recombinase [Lactobacillus
           reuteri MM4-1A]
 gi|183225501|dbj|BAG26018.1| phage integrase [Lactobacillus reuteri JCM 1112]
 gi|227071009|gb|EEI09331.1| integrase [Lactobacillus reuteri MM2-3]
 gi|324977508|gb|EGC14459.1| phage integrase family site-specific recombinase [Lactobacillus
           reuteri MM4-1A]
          Length = 405

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 60/359 (16%), Positives = 114/359 (31%), Gaps = 48/359 (13%)

Query: 9   PFVTKERTRHGKIIYYFRKGH----GRRIRLPYPHEST---FI---PAYMSALTGSTPKR 58
            +        G   Y    GH    G+RI+     ++    F     AY   L     K 
Sbjct: 8   KYPDVYVDNKGHYYYLVELGHDLLTGKRIQKKSRRDANNNRFRSAHDAYKECL---RIKN 64

Query: 59  EYINSPRKKPTTL--KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT 116
           EY +        L     +  Y   ++   +  ++  S +S F  +I   G +  R I +
Sbjct: 65  EYQSQNGYANYGLLYGDFMENYYIPSYKSDVEHSTFKSRQSIFKHLINWFGQYKLRSIRS 124

Query: 117 KHIRSGV----ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
                          ++   +       R    +AVR +++  NP    +   +    + 
Sbjct: 125 IDCEKFRVYLLNKSGYSQGFSSMVYGLFRNTLDYAVRMDFLTKNPSRKTKAINKGKSNVE 184

Query: 173 PWTKEDMQQFKSF-WSEGSQPRLAFEFLLY---SGLRCSDSCRAGVQHLQNNIFSIKTQK 228
            WTK + ++  S  +++     + F  L      G+R S+        +      ++  K
Sbjct: 185 FWTKSEFEKVLSVIYTKDYYQHMCFTILYLYFTCGMRVSEGLALTYDDVDYKRHRLRINK 244

Query: 229 T------------------GTIITVELPDGFMKLLAMTPIGKE-----TFFINNDKQKMN 265
           T                    I T+ L +  +++L      ++      F ++ D   M+
Sbjct: 245 TLDMTNKEHYTIKPYTKTINGIRTISLDNDTIRVLKSWQKDQQAHGVYHFIMSYDDTPMS 304

Query: 266 ATQFSIWFKAKATKAGVN-KSAHGVRKFSATISA-DAGATAHELMATYGWKTVDQAETY 322
            T   +  K  A  AGV    A G+R  + +    +  A    +    G    D    Y
Sbjct: 305 RTTIPLIIKRFAKIAGVKPIQAKGLRHSNVSYLINEFNADVLTVSRRLGHSGPDITLKY 363


>gi|71274905|ref|ZP_00651193.1| phage-related integrase [Xylella fastidiosa Dixon]
 gi|71898793|ref|ZP_00680961.1| phage-related integrase [Xylella fastidiosa Ann-1]
 gi|170729832|ref|YP_001775265.1| phage-related integrase [Xylella fastidiosa M12]
 gi|71164637|gb|EAO14351.1| phage-related integrase [Xylella fastidiosa Dixon]
 gi|71731379|gb|EAO33442.1| phage-related integrase [Xylella fastidiosa Ann-1]
 gi|167964625|gb|ACA11635.1| phage-related integrase [Xylella fastidiosa M12]
          Length = 390

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 62/376 (16%), Positives = 110/376 (29%), Gaps = 73/376 (19%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGR-RIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
           +PP + + +   G I +    G GR    +P+P         ++           I   +
Sbjct: 11  IPPHIDQSKIPKG-IYW----GDGRWYTLIPHPEGGRHQKRTIAGRAARLSDLHAIIEQQ 65

Query: 66  KK---PTTLKWLISEYRKSAHWGSLAVNSRISFE-------SYFDQIIRKSGDFDYRKIT 115
                  T+  + +++  S+ +  LA  ++  ++       S+  +     G     ++ 
Sbjct: 66  HTGNVKGTVGDVFNQFHHSSEFAGLAKATQKDYQWCAQAIQSFLLKDNTTLGSKAVNRLN 125

Query: 116 TKHIRSGVESRKHT-------------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162
               +  VE                  PS A   L   R  F W +R  +   NP   V+
Sbjct: 126 VPTWQRLVEVIAQGRPAQGDSEAIQPAPSKANHMLRYARRAFAWGIRHGHCTTNPAHGVK 185

Query: 163 RPKRKTEGIRPW--TKEDMQQF------KSFWSEGS-QPRLAFEFLLYSGLRCS--DSCR 211
           + K +T    P   T   +  F      +   S GS  P LA       GLR    + C 
Sbjct: 186 QAKERTRYRMPDLKTFAAIHAFAAERGQRQAHSIGSVAPYLAAAMTFAYGLRLRGIEVCT 245

Query: 212 AGVQHLQNNIFSIKTQKTGTIITVELPDGFM---------------KLLAMTP--IGKET 254
               H +        +K          D                       TP       
Sbjct: 246 LTDAHHKPEGILSNRRKGSRDNITRWNDELRSAWDWLVQYRAARWASHKRATPLRPENRF 305

Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGVNK--------SAHGVRKFSATISADAGATAHE 306
            F+N    +++ +     ++     A +          S HG++          G T  E
Sbjct: 306 LFVNQSGARLSKSSLDTAWQRMIVMAIMEGVITEEERFSLHGLKH--------RGITDSE 357

Query: 307 LMATYGWKTVDQAETY 322
              + G +T    E Y
Sbjct: 358 DKRSGGHRTEAMRERY 373


>gi|329120983|ref|ZP_08249614.1| integrase/recombinase XerD-like protein [Dialister micraerophilus
           DSM 19965]
 gi|327471145|gb|EGF16599.1| integrase/recombinase XerD-like protein [Dialister micraerophilus
           DSM 19965]
          Length = 327

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 44/285 (15%), Positives = 90/285 (31%), Gaps = 46/285 (16%)

Query: 88  AVNSRISFESYFDQIIR-----KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRV 142
           + N+  ++ES +D         K   F     T  +  + +     + S+  + ++++  
Sbjct: 30  SENTINAYESDWDDFCNWCIYNKFSAFPATSETVVNYINDLADYAKS-STIKRRVSAISE 88

Query: 143 LFKWAVRQEYVAINPCL---------SVERPK-RKTEGIRPWTKEDMQQFKSF----WSE 188
            +  A+       NPC           + R K  + +G  P   ED+++           
Sbjct: 89  NYNAAIASGINVNNPCKNWIIKEALIGLNRKKGTRQKGKTPLYWEDLKKIIVTMNLSCLT 148

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---NNIFSIK------TQKTGTIITVELPD 239
             + +           R S+     +  +      I  I        +K+G  I +   +
Sbjct: 149 DIRDKAILLLGFMGAFRRSELTSLELNDITFVPQGIIIIVKESKTDQEKSGQTIGIPYLE 208

Query: 240 --------GFMKLLAMTPIGKETFF--INNDKQ----KMNATQFSIWFKAKATKAGVNK- 284
                        +    I K   F  +  + +     ++    ++  K    K G+ K 
Sbjct: 209 DKNMCAVSALKLWIKEAHITKGPLFRRLLKNGKTSDNALSDKSVNLIVKKYVNKIGLQKE 268

Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
              AH +R   AT +A  G     +M      +V+    Y   AD
Sbjct: 269 LYGAHSLRHGFATFAAMNGIEERIIMKQTRHHSVEMVRHYINEAD 313


>gi|325859512|ref|ZP_08172654.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
 gi|325482980|gb|EGC85971.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
          Length = 413

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 41/273 (15%), Positives = 89/273 (32%), Gaps = 33/273 (12%)

Query: 89  VNSRISFESYFDQIIRKSGDFDY--RKITTKHIRSGVESRKH--TPSSAIQFLTSMRVLF 144
             +     +    +     + +     ITT+ +   +    +  T +     + S+R   
Sbjct: 123 PATLKHHRTRLSHLYSYLYERNMVCMDITTEIMIGFLAHLDNIKTIAERDNHIISIRAFM 182

Query: 145 KWAVRQEYVAI-------NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPR 193
           K+   ++ +         N  L ++RP    +    +T+E++++  +        G +  
Sbjct: 183 KFLCERKELQDCSYERWIN-LLRLKRP-VSKKIPSVYTQEEVERIIASIDRISTIGKRNY 240

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLL-----A 246
                    GLR  D       ++    N   ++ QKT   IT+ L +     L      
Sbjct: 241 AMILLCARYGLRAIDVVGMRFCNIDWDTNEIRVRQQKTDKEITLPLSEEVGCALIDYIKN 300

Query: 247 MTPIGKETFFINNDKQKMNATQFSIW---FKAKATKAGVNKS-----AHGVRKFSATISA 298
             P     +          A    +          +AG++ +     +H +R   A+   
Sbjct: 301 GRPSANTPYLFIKHSAPYGALSSGVMALNVSTYMRRAGIDSTGKRTGSHILRHSLASNLL 360

Query: 299 DAGATAHELMATYGWKTVDQAETYTK-GADRIR 330
            A      +    G K+ +  ++Y K   DR+R
Sbjct: 361 KANEQLPVISEILGHKSTESTKSYLKVDLDRLR 393


>gi|301163084|emb|CBW22633.1| putative transposase [Bacteroides fragilis 638R]
          Length = 419

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 47/286 (16%), Positives = 92/286 (32%), Gaps = 38/286 (13%)

Query: 88  AVNSRISFESY-------FDQIIRKS--GDFDYRKITTKHIRSGVESRKH----TPSSAI 134
              ++ ++  Y        + + ++    D   ++IT  HI +     +     + ++A+
Sbjct: 134 KTATQKTYSRYELTKQRMIEFLQKEYKLSDIPVKEITVTHIENFYLYLRQECEVSNNTAM 193

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQ 191
           +F+     +  +A +     I+P  +      KT+     T+E++               
Sbjct: 194 KFVQRFHTILLFAQKSGLSFIDPFGNFRFNFDKTDRGY-LTQEEIDTIYYKEFKSKRLEH 252

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVELP----DGFM 242
            R AF F  Y+GL   D      + ++              KTG    + L     D   
Sbjct: 253 VRDAFIFSCYTGLPYCDIYTLSSEDIKIGVDGKKWIMKDRGKTGVESFIPLLQIPLDILA 312

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATIS-AD 299
           K       G+    I+N K        + +    A    +NK    H  R   AT     
Sbjct: 313 KYEGKLKDGRLLPVISNQK-------MNEYLAEIAAICQINKRITYHLARHSFATEICLT 365

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS--RRISSVV 343
            G     +    G   +   + Y +  DR      N   R++ ++ 
Sbjct: 366 KGVPIESVSKMLGHTNIQTTQIYARVVDRKLSHDMNMLDRKLKNMQ 411


>gi|256060768|ref|ZP_05450930.1| Phage integrase [Brucella neotomae 5K33]
 gi|261324757|ref|ZP_05963954.1| phage integrase [Brucella neotomae 5K33]
 gi|261300737|gb|EEY04234.1| phage integrase [Brucella neotomae 5K33]
          Length = 308

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 80/239 (33%), Gaps = 12/239 (5%)

Query: 93  ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEY 152
            SF    D+I++ +    + +     I   +  R ++ ++  + + ++  L + A +   
Sbjct: 63  RSFLGEIDEILKGARFSGFDQEMLDSIIGTLRERGNSNATINRKMAALSKLLRKAHKMGD 122

Query: 153 VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY-SGLRCSDSCR 211
           +  N    + R K +   IR   +E+ ++  +      +        L  +G R  ++  
Sbjct: 123 I-FNLPEFI-RQKERVGRIRFLEQEEEKRLFAAIKSRCEDSYRLSVFLVDTGCRLGEAIG 180

Query: 212 AGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI 271
                +Q    +    K+    TV L     K   + P  +    +      +N  +F  
Sbjct: 181 LTWNDIQEQRVTFWVTKSNRSRTVPLTRRARKAPHI-PRER----LKGPFSMLNQVRFRQ 235

Query: 272 WFKAKATKAGVNKS----AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            +     + G+        H +R   A+     G     +    G +T+     Y   A
Sbjct: 236 IWNEAKAEVGLGADDQIVPHILRHTCASRLVRGGIDIRRVQMWLGHQTLQMTMRYAHLA 294


>gi|212691154|ref|ZP_03299282.1| hypothetical protein BACDOR_00644 [Bacteroides dorei DSM 17855]
 gi|212666386|gb|EEB26958.1| hypothetical protein BACDOR_00644 [Bacteroides dorei DSM 17855]
          Length = 285

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 43/282 (15%), Positives = 94/282 (33%), Gaps = 27/282 (9%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           ++++++      +LA N+  S+       +   G+ + + +       G       P + 
Sbjct: 19  MVTKFKNHLAKTNLAKNTVTSYVWTVQYFLNHYGEVNKKNLLA---YKGYLVENFKPQTV 75

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI--RPWTKEDMQQFKSFWSEGSQ 191
              L  +    ++  +++         V+  K + +       +  D +  K+       
Sbjct: 76  NLRLQGINKYLEFTKQEKL-------KVKFVKVQQKNFLENVISDADYKFLKAQLKVDGY 128

Query: 192 PRLAFE--FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM----KLL 245
               F   F+  +G R S+      +H++     +   K G I  + +P        K L
Sbjct: 129 EEWYFIVWFMAATGARVSELLHIKAEHIKVGYLDL-YSKGGKIRRLYIPKNLRTESEKWL 187

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGA 302
               +     F+N   Q++     +   K  A K G+NK     H  R   A    D   
Sbjct: 188 KNQGLTSGYIFLNRFGQRITTRGIASQLKHFAEKYGMNKEVVYPHSFRHRFAKNFLDRFN 247

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
               L    G ++++    Y +     R   +  + +  VV+
Sbjct: 248 DLALLADLMGHESIETTRIYLR-----RTASEQQKIVDKVVN 284


>gi|189468269|ref|ZP_03017054.1| hypothetical protein BACINT_04666 [Bacteroides intestinalis DSM
           17393]
 gi|189436533|gb|EDV05518.1| hypothetical protein BACINT_04666 [Bacteroides intestinalis DSM
           17393]
          Length = 432

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 47/286 (16%), Positives = 92/286 (32%), Gaps = 38/286 (13%)

Query: 88  AVNSRISFESY-------FDQIIRKS--GDFDYRKITTKHIRSGVESRKH----TPSSAI 134
              ++ ++  Y        + + ++    D   ++IT  HI +     +     + ++A+
Sbjct: 147 KTATQKTYSRYELTKQRMIEFLQKEYKLSDIPVKEITVTHIENFYLYLRQECEVSNNTAM 206

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQ 191
           +F+     +  +A +     I+P  +      KT+     T+E++               
Sbjct: 207 KFVQRFHTILLFAQKSGLSFIDPFGNFRFNFDKTDRGY-LTQEEIDTIYYKEFKSKRLEH 265

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVELP----DGFM 242
            R AF F  Y+GL   D      + ++              KTG    + L     D   
Sbjct: 266 VRDAFIFSCYTGLPYCDIYTLSSEDIKIGVDGKKWIMKDRGKTGVESFIPLLQIPLDILA 325

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATIS-AD 299
           K       G+    I+N K        + +    A    +NK    H  R   AT     
Sbjct: 326 KYEGKLKDGRLLPVISNQK-------MNEYLAEIAAICQINKRITYHLARHSFATEICLT 378

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS--RRISSVV 343
            G     +    G   +   + Y +  DR      N   R++ ++ 
Sbjct: 379 KGVPIESVSKMLGHTNIQTTQIYARVVDRKLSHDMNMLDRKLKNMQ 424


>gi|111225141|ref|YP_715935.1| tyrosine recombinase [Frankia alni ACN14a]
 gi|111152673|emb|CAJ64414.1| Tyrosine recombinase [Frankia alni ACN14a]
          Length = 355

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 42/326 (12%), Positives = 91/326 (27%), Gaps = 54/326 (16%)

Query: 49  SALTGSTPKREYINSPRKKPTTLK-WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG 107
            A++G                  +  L++E  +S       V    S  ++ ++     G
Sbjct: 17  RAVSGPAAVEGAEAGWAAAIAGFRRHLVAELDRSPETVRAYVADLASLRAHAER----EG 72

Query: 108 DFDYRKITTKHIRSGVESRKHTPSSAIQFL---TSMRVLFKWAVRQEYVAINPCLSVERP 164
             +   +    +RS + S +   ++        +  RV   +A R+ ++  +    +   
Sbjct: 73  RPELADLDLTVLRSWLASMRAAGAAPATRARRASLARVFSAYAARRGFLTTDVAARLVGA 132

Query: 165 KRKTEGIRPWTKEDMQQFKS---------------------------------FWSEGSQ 191
           +   +  +  T    +Q                                      + G +
Sbjct: 133 RAVRQVPQVLTAVAARQLLDAVSGPGQAPGDQAAAQVRHLTGTRPGRDDDAAVREALGLR 192

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPI 250
             L  E L  SG+R S+ C   +  + +    ++   K G   +V         L     
Sbjct: 193 DALVLELLYGSGVRVSELCGLDLGDIDDERRLLRVLGKGGRERSVPFGVPAAGALRAWRT 252

Query: 251 GKETFFINNDKQKMNATQFS---------IWFKAKATKAGV---NKSAHGVRKFSATISA 298
                                            A+  + G+     + HG+R  +AT   
Sbjct: 253 SGRPLLAAPQSGSALLLGQLGGRLDPRTVRRVLARCVELGIVPPGLTPHGLRHSAATHML 312

Query: 299 DAGATAHELMATYGWKTVDQAETYTK 324
           + GA    +    G  ++   + YT 
Sbjct: 313 EGGADLRSVQEFLGHASLATTQIYTH 338


>gi|74317826|ref|YP_315566.1| phage integrase family site specific recombinase [Thiobacillus
           denitrificans ATCC 25259]
 gi|74057321|gb|AAZ97761.1| site-specific recombinase, phage integrase family [Thiobacillus
           denitrificans ATCC 25259]
          Length = 352

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 52/315 (16%), Positives = 93/315 (29%), Gaps = 43/315 (13%)

Query: 45  PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR 104
            A+   +     +  +++    + TTL+ LI  YR       L       F      + +
Sbjct: 35  EAWARQIESEMDRGVFVSRAEVERTTLQDLIGRYRIEV----LPNKRGKHFGPALRVLEQ 90

Query: 105 KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKW----AVRQEY-VAINPCL 159
             G +    ++ K I    + R     SA      + +L K            +  NPC 
Sbjct: 91  HLGKYSLAALSPKLIAGFRDKRTKAGLSASTVKKEINLLSKLIDLAGKEWGVALPANPCA 150

Query: 160 SVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN 219
            V RP  K    R    E+ +   +         L   F L +  R  +        +  
Sbjct: 151 MVSRPVEKNARDRRLQPEEEKYLLTACE--QHVALLSRFALETAARLGELLALRWADVDT 208

Query: 220 -------NIFSIKTQKTG--------TIITVELPDGFMKLLAMTPIGKETF------FIN 258
                       +  K+G        +   V + D   KL          +      F  
Sbjct: 209 TKRVMVIRGIDERGTKSGDALRAVPLSPAAVSVLDELKKLPRGIDGRVFYWWKASDSFSK 268

Query: 259 NDKQKMNATQFSIWFKAKATKAG--------VNKSAHGVRKFSATISADAGA-TAHELMA 309
              + +     S    A   KAG        ++   H +R  + +   + G   + E+ +
Sbjct: 269 TWGRALTRAHASYI--ADCEKAGGEPDQAFLIDLRFHDLRHEATSRLFEKGVFDSMEVAS 326

Query: 310 TYGWKTVDQAETYTK 324
             G KT+   + YT 
Sbjct: 327 ITGHKTLAMLKRYTH 341


>gi|29347687|ref|NP_811190.1| transposase [Bacteroides thetaiotaomicron VPI-5482]
 gi|237718219|ref|ZP_04548700.1| transposase [Bacteroides sp. 2_2_4]
 gi|255008772|ref|ZP_05280898.1| transposase [Bacteroides fragilis 3_1_12]
 gi|313146514|ref|ZP_07808707.1| transposase [Bacteroides fragilis 3_1_12]
 gi|29339588|gb|AAO77384.1| transposase [Bacteroides thetaiotaomicron VPI-5482]
 gi|229452403|gb|EEO58194.1| transposase [Bacteroides sp. 2_2_4]
 gi|313135281|gb|EFR52641.1| transposase [Bacteroides fragilis 3_1_12]
          Length = 419

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 47/286 (16%), Positives = 92/286 (32%), Gaps = 38/286 (13%)

Query: 88  AVNSRISFESY-------FDQIIRKS--GDFDYRKITTKHIRSGVESRKH----TPSSAI 134
              ++ ++  Y        + + ++    D   ++IT  HI +     +     + ++A+
Sbjct: 134 KTATQKTYSRYELTKQRMIEFLQKEYKLSDIPVKEITVTHIENFYLYLRQECEVSNNTAM 193

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQ 191
           +F+     +  +A +     I+P  +      KT+     T+E++               
Sbjct: 194 KFVQRFHTILLFAQKSGLSFIDPFGNFRFNFDKTDRGY-LTQEEIDTIYYKEFKSKRLEH 252

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVELP----DGFM 242
            R AF F  Y+GL   D      + ++              KTG    + L     D   
Sbjct: 253 VRDAFIFSCYTGLPYCDIYTLSSEDIKIGVDGKKWIMKDRGKTGVESFIPLLQIPLDILA 312

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATIS-AD 299
           K       G+    I+N K        + +    A    +NK    H  R   AT     
Sbjct: 313 KYEGKLKDGRLLPVISNQK-------MNEYLAEIAAICQINKRITYHLARHSFATEICLT 365

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS--RRISSVV 343
            G     +    G   +   + Y +  DR      N   R++ ++ 
Sbjct: 366 KGVPIESVSKMLGHTNIQTTQIYARVVDRKLSHDMNMLDRKLKNMQ 411


>gi|310826137|ref|YP_003958494.1| hypothetical protein ELI_0515 [Eubacterium limosum KIST612]
 gi|308737871|gb|ADO35531.1| hypothetical protein ELI_0515 [Eubacterium limosum KIST612]
          Length = 432

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 55/415 (13%), Positives = 121/415 (29%), Gaps = 103/415 (24%)

Query: 16  TRHGKIIYYFR----KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
            R     +Y+R       G R++  +P   +                E     + +  T+
Sbjct: 6   VRKKGKKWYYRFYIEDESGNRVQKEFPGTESKAETEALLRKAMEDYEEKKFVAKTENVTV 65

Query: 72  KWLISEY-RKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVESRKHT 129
             L+  +  +    G+L+  + ++++   ++I +   G+   + +T  H+++ ++     
Sbjct: 66  GTLLDMWVEEELKPGNLSNGTVMAYQGTVNRIKQHPIGNRKLKSVTADHLQAYIDFLSFG 125

Query: 130 PSSAIQ-------------FLTSMRVLFKWAV-RQEYVAINPCLSVERPKRKTEGIRPWT 175
            ++A               F   ++  F++AV  +  ++ NP   V   + K E    ++
Sbjct: 126 GTNADGTQAKALSKGYLRLFSAVLQGAFRFAVFPKRLISFNPMQYVVW-RGKKEEYELFS 184

Query: 176 KED----------MQQFKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221
            ED           +Q+         + +   L  +   Y+GLR  + C    Q +    
Sbjct: 185 DEDGDVTSVPTISHEQYLKLEDFLKKKYNPALLPIQIAYYTGLRIGEVCGLTWQDINLEG 244

Query: 222 FSIKTQ-----------------KTGTIITVELPDGFMKLLAMTPIGKET---------- 254
             +  +                 K   + TV+  D    +L      +            
Sbjct: 245 QYLTVRRSMRYNGARHKTEIGATKRKKVRTVDFCDTLAAILKTAKAEQHKNRFRYGELYS 304

Query: 255 -----------------------------------FFINNDKQKMNATQFSIWFKAKATK 279
                                                +  D    + +   I  +A   K
Sbjct: 305 LNYYSEVKEKDRTYYEVYSLPRTEEVPEGYKEISFVCLRPDGAFESPSTVGIMCRAARKK 364

Query: 280 -AGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TY---TKGADR 328
             G+     H +R    +     GA   ++    G   V      Y   T+ A R
Sbjct: 365 VEGLEGFHFHQLRHTFTSNLLSNGAAPKDVQELLGHADVSTTMNIYAHATREAKR 419


>gi|58581303|ref|YP_200319.1| phage-related integrase [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84623227|ref|YP_450599.1| phage-related integrase [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|58425897|gb|AAW74934.1| phage-related integrase [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84367167|dbj|BAE68325.1| phage-related integrase [Xanthomonas oryzae pv. oryzae MAFF 311018]
          Length = 394

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 43/318 (13%), Positives = 86/318 (27%), Gaps = 63/318 (19%)

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR-------KSGDFDYRKITTKHI 119
           +  TL +L   + +S  + +LA  ++  +                + G     +I    +
Sbjct: 72  ERGTLAFLDERFHRSTEFKALAPGTQKDYRQSGQAACAYVLKDGSQLGRMQVTRINVPTM 131

Query: 120 RSGVESRKH-------------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
           +  VE+                 PS A   L  +R LF W +R      NP   V + K 
Sbjct: 132 QRLVETLAAGREATAMQPAIEPRPSKANHVLRYLRRLFGWGIRFGLCEHNPAKGVRQAKE 191

Query: 167 KTEGIRPWTKED-------MQQFKSFWSEGSQP------RLAFEFLLYSGLRCSDSCRAG 213
                    ++D         Q ++ +   ++                  LR ++     
Sbjct: 192 L--AAHTMPEQDAFTAILRFAQQRATFDAHTKGSVSPYLHAVMVLAYNLRLRGAEVTDLT 249

Query: 214 VQHLQNNIFSIKTQKTG-----------TIITVELPDGFMKLLAM------TPIGKETFF 256
             H        + +K                   L +   + +A           +    
Sbjct: 250 DAHAGEQGILARRRKGSRDNVTLWNEELRGAWAWLIEYRRRTMAAHERPVPLKPEQRRLV 309

Query: 257 INNDKQKMNATQFSIWFKAKATKAGVNK--------SAHGVRKFSATISADAGATAHELM 308
           ++     +  +     ++   T A            S HG++    T +    A   E  
Sbjct: 310 VSQSGTPLTKSALDSAWQRMMTLAIREGVIEEAQRFSLHGLKHRGITDTEGNLADKQEAA 369

Query: 309 ATYGWKTVDQAETYTKGA 326
              G KT +    Y+   
Sbjct: 370 ---GHKTQEMTRRYSHDV 384


>gi|323699759|ref|ZP_08111671.1| integrase family protein [Desulfovibrio sp. ND132]
 gi|323459691|gb|EGB15556.1| integrase family protein [Desulfovibrio desulfuricans ND132]
          Length = 359

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 44/270 (16%), Positives = 87/270 (32%), Gaps = 28/270 (10%)

Query: 101 QIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQE--YVAIN 156
           +++   G      IT       + +  R+ TP +    L  +R  F W +++   ++  N
Sbjct: 88  RLLDYFGKVPCSVITRLKADEFLMAVVRERTPVAGNNDLKVLRAAFSWGMKRGQRFIQDN 147

Query: 157 PCLSVERPKRKTEGIRPWTK--EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGV 214
           P   +E         R  T   +++ +         +P L    L  +  R  +  R   
Sbjct: 148 PFAGLETFPSDKPSERKKTPRIDELDRMIEAAQPKHRPYLW--VLRETMARSIEVHRLTW 205

Query: 215 Q--HLQNNIFSIKTQKTGTI----ITVELPDGFMKLLA-----MTPIGKETFFINNDK-- 261
              + +     ++T+K          V + D   ++L+       P  +  F+  +    
Sbjct: 206 NRVNFEERYVELETRKNKNREPVLRRVPMTDKLYEVLSNLYATHAPKKEWVFWTRSYNAK 265

Query: 262 -----QKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKT 315
                +           +     AGV+  + H  R   A++  ++GA    +    G   
Sbjct: 266 TGMMEEGPYRRGRYSMLQKICRDAGVDYYTFHRFRASGASVMDNSGALLPGIQRILGHAD 325

Query: 316 VDQAETYT-KGADRIRLGIKNSRRISSVVD 344
               E Y  K  D  R  +    R S   D
Sbjct: 326 RRSTEIYLEKLRDVERDAMDVYERESRKDD 355


>gi|257453518|ref|ZP_05618808.1| phage integrase family protein [Enhydrobacter aerosaccus SK60]
 gi|257448976|gb|EEV23929.1| phage integrase family protein [Enhydrobacter aerosaccus SK60]
          Length = 446

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 60/395 (15%), Positives = 116/395 (29%), Gaps = 59/395 (14%)

Query: 9   PFVTKERTRHGKIIYYFRKGH---GRRIRLPYPHESTF-----IPAY---MSALTGST-- 55
             +      +GK  +  R  H   G+R  +       F       AY   M+ L  +   
Sbjct: 32  KGLELRIRPNGKAEFRHRYTHPYTGKRPYMTLGSYPAFSLAQAKQAYNDNMALLAQTIDP 91

Query: 56  ---PKREYINSPRKKPTTLKWLISEYRKS----AHWGSLAVNSRISFESYFDQIIRKSGD 108
               ++E          T + +  ++         +   A  + +++E     +I   G 
Sbjct: 92  LTHKEQENAKQAYALDNTFEAVAKDWLNEQTNNPDYVR-AKQTIVNWEYQLKPLIATFGK 150

Query: 109 FDYRKIT-TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL---SVERP 164
                IT  + +R   E +K       +       +F  AV    +  NP L        
Sbjct: 151 MPIGSITTPQVLRLLREIQKTHIQKGNRVKAIAGRIFAHAVINGLIEHNPVLQLAGARAL 210

Query: 165 KRKTEGIRP--WTKEDMQQFKSFWSEGSQPRL----AFEFLLYSGLRCSDSCRAGVQ--H 216
           K      RP   T  +  +        +  +L      + L  + +R  D C       H
Sbjct: 211 KPTRSDHRPALITPAEFAELLKEIDNITNAKLFQKEILQLLALTFVRIGDVCAMKWADIH 270

Query: 217 LQNNIFSIKTQKTGTI------ITVELPDGFMKLLAM--TPIGKETFFINNDKQKMNATQ 268
           L+  ++  + QK          + V L    + +L       G   +     K+K     
Sbjct: 271 LEAKMWVFEPQKGKNRHDMVDCLVVPLAPQTIAILERMHEITGGMEYVFYTGKRKKGQHA 330

Query: 269 FSIWFKAK-----ATKAGVNK-----------SAHGVRKFSATISADAGATAHELMATYG 312
                          KAG+ K           S HG R  + T+  +     H +     
Sbjct: 331 DPQQINRILNDPSMNKAGMGKNYCGKGYLNVHSPHGFRASAKTLLMERLGYNHLITEIQS 390

Query: 313 WKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
            ++    + Y    +R+    +  + ++   +  D
Sbjct: 391 GRS--MPDVYGNTYNRMEAINERIKMMNDWANYLD 423


>gi|300954451|ref|ZP_07166903.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 175-1]
 gi|300318601|gb|EFJ68385.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 175-1]
          Length = 412

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 56/368 (15%), Positives = 121/368 (32%), Gaps = 40/368 (10%)

Query: 16  TRH---GKIIYYF--RKGHGRRI---RLPYPHESTFI-----------PAYMSALTGSTP 56
            RH   G + +YF  R G GR++   RL   +                 A+++       
Sbjct: 35  VRHSTSGLLTWYFTYRAGTGRQVSPERLRLGNYPDLSLKAAREKAAQCRAWLAEGKNPRH 94

Query: 57  KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKIT 115
           +  +       P T+K  ++ + +S  +         S +S  +  II + G     K  
Sbjct: 95  ELNHTVQEALAPVTVKDALTYWLES--YAKEKRTDHESLKSRINKHIISQIGAMPLDKCE 152

Query: 116 TKHIRSGVESRKHT-PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV---ERPKRKTEGI 171
            +H  +  +   +  P SA   L   +   K+  ++ Y   N    +   +  K+     
Sbjct: 153 LRHWLACFDQLANRNPVSAGFLLQVCKQALKYCRKRRYAVSNVLDDMVVGDVGKKAEISE 212

Query: 172 RPWTKEDM-QQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-- 226
           R  T +++ +  ++   +   P        L+  G R ++  R+ V+             
Sbjct: 213 RVLTNKELGELLRALDEKIFPPYYSALIRLLIVFGCRTTELRRSEVREWDFKEMLWTVPK 272

Query: 227 --QKTGTIITVELPDGFMKLLAMTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGV 282
              KT   I   +P+  +  +             +   K + +  ++      +  +   
Sbjct: 273 EHSKTKVAIFRPIPEAILPFVMKLVEQNRHTGLLLGELKGQSSVAEYGRTAHRRINQT-- 330

Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY--TKGADRIRLGIKN-SRRI 339
             S H +R    T+  D G   H +      +       Y  ++  D  R  +     R+
Sbjct: 331 PWSLHDIRHTFTTMLNDLGVDPHIVEQLTAHQMPGMQRVYNHSRYLDAKRDALNLWVDRL 390

Query: 340 SSVVDSDD 347
             + ++D+
Sbjct: 391 ELLQNNDE 398


>gi|302878058|ref|YP_003846622.1| integrase family protein [Gallionella capsiferriformans ES-2]
 gi|302580847|gb|ADL54858.1| integrase family protein [Gallionella capsiferriformans ES-2]
          Length = 353

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 40/254 (15%), Positives = 82/254 (32%), Gaps = 40/254 (15%)

Query: 111 YRKITTKHIRSGVESRKHTPSS----AIQFLTSMRVLFKW----AVRQEYVAINPCLSVE 162
              I     +   +  +  P +    A   L  M +   +    + R  Y   NP   ++
Sbjct: 104 VDDIEDYVYQRRQDKSRRNPENNVSEATIRLEVMLLSAVFEAAKSKRWNYCRTNPVRDID 163

Query: 163 ---RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR---LAFEFLLYSGLRCSDSCR----- 211
              RP + +E +R    E+  +  +   +  +     L     + +  R S+        
Sbjct: 164 QDARPGKSSERVRRLVGEEESRLLAALDKRCRNADIPLVVRLAIATAARQSEIIGKDSTS 223

Query: 212 -------AGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTP---IGKETFFINN 259
                     +++        +   K G    + + D  + LL+  P    G   F    
Sbjct: 224 TRPASPGLCWENVNLAQRSAKLIDTKNGKDRIIPIGDSALALLSALPRPITGGRVF---- 279

Query: 260 DKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
              K+        F A    A + + + H +R  + +   +AG +  E+ +  G    + 
Sbjct: 280 ---KVTQDGLIRSFAAACVDAKIEDLTFHDLRHEATSRMVEAGLSLLEVQSVTGHSNAEM 336

Query: 319 AETYTKGADRIRLG 332
            + YT   D +RL 
Sbjct: 337 VKRYTH-LDTLRLA 349


>gi|197265110|ref|ZP_03165184.1| prophage lambda integrase [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|197243365|gb|EDY25985.1| prophage lambda integrase [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
          Length = 406

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 56/359 (15%), Positives = 118/359 (32%), Gaps = 52/359 (14%)

Query: 9   PFVTKERT-RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY------- 60
           P +  +   R GKI + ++     R       E         A T    +R         
Sbjct: 39  PNLYCKLDKRTGKIYWQYKHPVSGRFHSLGTDEVEAKKVASEANTIIAEQRTRQVLSVND 98

Query: 61  ---INSPRKKPTTLKWLISEYRKSAHWG----SLAVNSRISFESYFDQIIRKSGDFDYRK 113
                  R+   T+   I +Y +          L  NS               G    + 
Sbjct: 99  RIARMKGRRTDITVTEWIDKYIEIQDERLKHRELRPNSYRQKAKPVRLFREHCGMQYLKD 158

Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMRVL----FKWAVRQEYVAI--NPCLSVERPKRK 167
           I+   I    ++ K       +    +R++    FK A    +V    NP L+ ++P+ +
Sbjct: 159 ISALDISEITDAVKAEGH--NRMAQVVRMVLIDVFKEAQHNGHVPPGYNPALATKQPRNR 216

Query: 168 TEGIRPWTKEDMQQ-FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226
               R  + E+ +  +++   +    +      + +G R  D C    + + +++  ++ 
Sbjct: 217 VTRQR-LSLEEWKTIYEAAEKQEPYLQCGMLLAIITGQRLGDICNMKFKDIWDDMLHVEQ 275

Query: 227 QKTGTIITVELPDGFMKLLAMTPIG-----------------KETFFINNDKQKMNATQF 269
           +KTG+ + + L D   + L +T                    + T    N   +++ +  
Sbjct: 276 EKTGSRLAIPL-DLKCEALGLTLRDVVSKCRDAVISKYLVHFRHTTSQANRGDQVSTSSL 334

Query: 270 SIWFKAKATKAGVNK------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           +  FK    ++G+        + H  R  S  +  + G    +L    G K+    + Y
Sbjct: 335 TSTFKKARDRSGLKWDKGSPPTFHEQRSLSERLYREQGVDTQKL---LGHKSRKMTDKY 390


>gi|168822428|ref|ZP_02834428.1| gp27 [Salmonella enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|205341168|gb|EDZ27932.1| gp27 [Salmonella enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
          Length = 349

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 45/318 (14%), Positives = 91/318 (28%), Gaps = 33/318 (10%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87
             GRRIR    +      A+ +     +  + ++   ++    L  +I  +    +    
Sbjct: 20  REGRRIR-RQFNTKGEAEAFEAFTKSESEDKPWLGK-KEDRRRLSEIIQLWH---NLHGQ 74

Query: 88  AVNSRISFESYFDQIIRKSGD--------FDYRKITTKHIRSGVE--------SRKHTPS 131
           A+ +  S  +    +    GD         D+     K +R  ++             P 
Sbjct: 75  ALVASKSRLAKLQIVCNGLGDPIASRLTAKDWAHYRDKRLRGEIDNGYHKDPAKWIAKPI 134

Query: 132 SAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDM-QQFKSFWSEG 189
           +  +    +  +F    R   +   NP   +   K   + +   T   + + F++    G
Sbjct: 135 TVNREQQYLEAVFNELKRLGEWSLPNPLDGIRVFKEAEKEMSWLTLSQLPELFRACEQYG 194

Query: 190 SQPRLAF-EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248
            +      +  L +G R  ++ R     L     +    K     TV +P      L+  
Sbjct: 195 KEDLTMIVKVCLATGARWGEAERLTRPQLSPYKLTFTKTKGKKNRTVPIPKWLYDELSE- 253

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELM 308
                 F       K    +F    K    +    +  H +R          G     L 
Sbjct: 254 -RQGRMF-------KPCYQEFKKMLKLTNIELTEGQKTHVLRHTFGAHFMMNGGNILVLQ 305

Query: 309 ATYGWKTVDQAETYTKGA 326
              G   + +   Y   A
Sbjct: 306 KILGHANIRETMKYAHFA 323


>gi|239831475|ref|ZP_04679804.1| Tyrosine recombinase xerC [Ochrobactrum intermedium LMG 3301]
 gi|239823742|gb|EEQ95310.1| Tyrosine recombinase xerC [Ochrobactrum intermedium LMG 3301]
          Length = 308

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 31/215 (14%), Positives = 69/215 (32%), Gaps = 12/215 (5%)

Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
             +   +  R ++ ++  + + ++  L + A +   +  N    V R K +   IR    
Sbjct: 87  DSVIGSLRERGNSNATINRKMAALSKLLRKAHKMGDI-FNLPEFV-RQKERVGRIRFLEY 144

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLY-SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
           E+ ++  +      +        L  +G R  ++       +Q+   +    K+    TV
Sbjct: 145 EEEKRLFAAIKSRCEDSYRLSLFLVDTGCRLGEAIGVTWNDVQDQRVTFWLTKSNRSRTV 204

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS----AHGVRK 291
            L     K   +     +  F       +N  +F   +     + G+        H +R 
Sbjct: 205 PLTRRARKAAHIPHEKLKGPF-----SMLNQVRFRQIWNEAKMEVGLGTDDQVVPHILRH 259

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
             A+     G     +    G +T+     Y   A
Sbjct: 260 TCASRLVRGGIDIRRVQMWLGHQTLQMTMRYAHLA 294


>gi|171057642|ref|YP_001789991.1| integrase family protein [Leptothrix cholodnii SP-6]
 gi|170775087|gb|ACB33226.1| integrase family protein [Leptothrix cholodnii SP-6]
          Length = 388

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 42/301 (13%), Positives = 82/301 (27%), Gaps = 60/301 (19%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           I E+   A         +R  +   F  +    GD     I     R   +  +  PS+A
Sbjct: 20  IDEFIDEAQAGKKWTEKTRDRWVVTFRNLTEFLGDIPIHSIKRPACRDFFQRLQRLPSNA 79

Query: 134 IQF------------------------------LTSMRVLFKWAVRQEYVAINPCLSVER 163
            +                               +T +   FKWAV    +  NP   ++ 
Sbjct: 80  NKMAALKGKNFLELTSPDIEGFEVLSEGTVNDHMTRISGFFKWAVTHYELKSNPAAGLQI 139

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWS------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217
            + +T    P+T+ ++                          L++G R ++ C+  +   
Sbjct: 140 AEVETTKRIPFTESELLALFGRKDWQNRSFLHPHYYWVMLLGLFTGARLNELCQLRLVDF 199

Query: 218 ------------QNNIFSIKTQKTGTIITVELPDGFMKL-------LAMTPIGKETFFIN 258
                             ++ +       V +    ++L             G   F   
Sbjct: 200 FQVEGVDVISIADEEGEGLRKKNKNARRRVPIHPELIRLGLLRWVESQRAAGGVNLFDEL 259

Query: 259 NDKQKMNATQFSIWFKAKATKAGV----NKSAHGVRKFSATISADAGATAHELMATYGWK 314
              +  +    S WF       G+    +K  H  R    +   +A    H++    G +
Sbjct: 260 KPGRDGHGQAVSKWFGKYRKACGIVETQSKVFHSFRSGLISQLMNADVVLHKIAHIVGHE 319

Query: 315 T 315
           T
Sbjct: 320 T 320


>gi|154499004|ref|ZP_02037382.1| hypothetical protein BACCAP_02996 [Bacteroides capillosus ATCC
           29799]
 gi|150271844|gb|EDM99070.1| hypothetical protein BACCAP_02996 [Bacteroides capillosus ATCC
           29799]
          Length = 327

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 38/285 (13%), Positives = 87/285 (30%), Gaps = 18/285 (6%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD 110
           L+G    R        K  T+   I+  R        +  +   +      ++    D +
Sbjct: 33  LSGVELSRSAGMVDSAKVDTVACFINAKRIEGC----SEKTLSYYRQTIVSMLSGI-DKE 87

Query: 111 YRKITTKHIRSGV----ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
            ++I T+ +R  +     +RK +  +       +   F W   ++Y+  +P   + + K 
Sbjct: 88  PQEIVTEDLRKYLTEYQANRKSSKVTIDNIRRILSSYFSWLEDEDYIVKSPVRRIHKVKT 147

Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226
                  +T E ++  +       +     + L  SG+R  +        +  N      
Sbjct: 148 AKVIKETYTDEALEIMRDNCC-NVRDLAMIDLLASSGMRVGEMVALNRDDINFNERECVV 206

Query: 227 QKTGTIITVELPDG-----FMKLLAMTPIGKETFF--INNDKQKMNATQFSIWFKAKATK 279
              G+   +   D       +  L          F  +     ++         +    +
Sbjct: 207 FGKGSKERIVYFDARTKIHLLNYLESRTDTCSALFVSLTAPHDRLQIGGVERRLRELGKR 266

Query: 280 AGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
             + +   H  R+  AT + D G    ++    G + +D    Y 
Sbjct: 267 LHLPRVHPHKFRRTLATSAIDKGMPIEQVQQLLGHQKIDTTMHYA 311


>gi|159046238|ref|YP_001541910.1| integrase family protein [Dinoroseobacter shibae DFL 12]
 gi|159046544|ref|YP_001542214.1| integrase family protein [Dinoroseobacter shibae DFL 12]
 gi|157913997|gb|ABV95429.1| phage integrase [Dinoroseobacter shibae DFL 12]
 gi|157914303|gb|ABV95733.1| phage integrase [Dinoroseobacter shibae DFL 12]
          Length = 334

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 37/264 (14%), Positives = 82/264 (31%), Gaps = 36/264 (13%)

Query: 101 QIIRKSGDFDYRKITTKHIRSGVES----RKHTPSSAIQFLTSMRVLFKWAVRQE----- 151
           ++ R   +     +  + IR+ +E     R ++  S    L +++  F++   ++     
Sbjct: 44  RVKRTPSELFIEDLDIQTIRAFLEHIEEGRANSVRSRNARLAAIKSFFRFVEHRQPACLE 103

Query: 152 ---YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FWSEGSQPRLAFEFLLYSGL 204
               +   P       +   + I   TKE+++   +        G + R        +GL
Sbjct: 104 QAMMIRAMPTK-----RTDAKLIDYLTKEEVRALLAAPNRHTPGGLRDRAMLHLTYAAGL 158

Query: 205 RCSDSCRAGVQHLQNNIFS--IKTQKTGTIITVELPDGFMKLLAM-----TPIGKETFFI 257
           R S+     +    +  FS      K      + L       +               F+
Sbjct: 159 RASELLAVRMDDFPDGSFSNVRILGKGRRERVLPLWKETQCAIRAWLAVRPGRVGPELFL 218

Query: 258 NNDKQKMNATQFSIWFKAKAT--------KAGVNKSAHGVRKFSATISADAGATAHELMA 309
           N D ++M    F+   +             A    + H +R   A  +  A     ++  
Sbjct: 219 NRDGRRMTRDGFAYRLRQHVATAERSTPSIAAKQVTPHVLRHSCAMHTLQATGDIRKVAL 278

Query: 310 TYGWKTVDQAETYTKGADRIRLGI 333
             G  ++   E Y +     +L +
Sbjct: 279 WLGHASIQTTEMYLRADPTEKLAL 302


>gi|317480920|ref|ZP_07940001.1| phage integrase [Bacteroides sp. 4_1_36]
 gi|316903005|gb|EFV24878.1| phage integrase [Bacteroides sp. 4_1_36]
          Length = 308

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 35/305 (11%), Positives = 97/305 (31%), Gaps = 39/305 (12%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFD-YRKITTKHIRSGVESRKH 128
           +     EY++      +  ++  ++    +  ++   GD D   +   +           
Sbjct: 9   IAAAWKEYKR----PYVKQSTMAAYVLILENHVLPYFGDGDSLHEQAVQAFVLQKLGNGL 64

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT-EGIRPWTKEDMQQFKSFWS 187
           +  +    L  ++++ K+ V+ E++       ++ P   T + +   +  + ++  ++  
Sbjct: 65  SVKTVKDILIVLKMVMKFGVKNEWMTYYE-WDIKYPTTSTSKELEVLSVANHRKILNYIQ 123

Query: 188 EG-SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV----------- 235
              +   L     L +GLR  + C      +     +I   +T   I +           
Sbjct: 124 SHFTFTGLGIYISLSTGLRIGEICALKWSDINVADGTITVSRTIERIYIIEGEKKHTELV 183

Query: 236 -------------ELPDGFMKLLAMTP--IGKETFFINNDKQKMNATQFSIWFKAKATKA 280
                         +    + ++      + ++ + + ND++      +  ++     K 
Sbjct: 184 INTPKTKNSCREIPMSKELLSMIKPLKKVVNEDFYVLTNDERPTEPRTYRNYYNGLMAKL 243

Query: 281 GVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK--GADRIRLGIKNS 336
            + K   HG+R   AT   +AG     +    G   +      Y       + R   K  
Sbjct: 244 DIPKLKYHGLRHSFATRCIEAGCDYKTVSVLLGHSNISTTLNLYVHPNMEQKKRCITKMF 303

Query: 337 RRISS 341
           + +  
Sbjct: 304 KSLGK 308


>gi|197302682|ref|ZP_03167736.1| hypothetical protein RUMLAC_01412 [Ruminococcus lactaris ATCC
           29176]
 gi|197298264|gb|EDY32810.1| hypothetical protein RUMLAC_01412 [Ruminococcus lactaris ATCC
           29176]
          Length = 370

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 44/290 (15%), Positives = 90/290 (31%), Gaps = 43/290 (14%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKH 128
           T++   + Y +     SL  ++ ++ E+    +I+   G     +IT K +       + 
Sbjct: 56  TMESFCALYEEDVR-PSLKQSTWLTKENIIQKKILPYLGQRKVSEITAKDVMDWHNQMRK 114

Query: 129 TPSSAIQFLT---------SMRVLFKWAVRQEYVAINPCLSVERPKRK-TEGIRPWTKED 178
             +   + L+          +  +F  AV+   ++ NP         +  + +  WTKE+
Sbjct: 115 LKTKTGKLLSPTYLKTIHGQLSTIFNHAVKYYDLSTNPARKAGALGTEEGKEMLFWTKEE 174

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK---------- 228
            + F     +      AF+ L + G+R  +              +++  K          
Sbjct: 175 YKLFAEEMMDKPLSYYAFQLLYWCGIRSGELLALTPADFNFKKKTLRINKSYQRLQGKDV 234

Query: 229 ------TGTIITVELPDGF-------MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKA 275
                   +I TV +P          +KL          F        +     +   + 
Sbjct: 235 ITTPKTKNSIRTVVMPQFLCDEMQDCLKLYYSLKPDDRIF-------PVTKYYLNHEMER 287

Query: 276 KATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
                GV K   H +R    ++  + G TA  +    G         Y  
Sbjct: 288 GCKACGVKKIRVHDLRHSHVSLLINMGYTALAIGKRVGHSAEKITYRYAH 337


>gi|257088616|ref|ZP_05582977.1| recombinase [Enterococcus faecalis CH188]
 gi|256997428|gb|EEU83948.1| recombinase [Enterococcus faecalis CH188]
          Length = 316

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 38/261 (14%), Positives = 79/261 (30%), Gaps = 29/261 (11%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA--IQFLTSMRVLFK 145
              +  +  S              + I   HI+           +          ++   
Sbjct: 10  KERTYNNRLSTIKNTFAYFFKMKLKSIAPVHIQKWQNELLEQYENTYVRNIYGLFQMSLD 69

Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ----FKSFWSEGSQPRLAFEFLLY 201
            AV    ++ NP   V   K+  + I  WTKE+ ++    F   +   +   +    L  
Sbjct: 70  RAVVLGMISSNPAKIVGNVKKSKKEIDFWTKEEFEKVIKTFYIEYYYQNFSFICIWLLFM 129

Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKTQKT-----------------GTIITVELPDGFMKL 244
           +G+R  ++     + +  +   +  +K+                  +I T+ L +  +  
Sbjct: 130 TGMRIGEATALTWKDVNLDGRYLTVKKSLYYKNAQTYEFVSPKTRASIRTIYLDEDTVHY 189

Query: 245 LAMTP-----IGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISA 298
           L         +G   F ++ +             K  A  AGV +   H +R   A++  
Sbjct: 190 LRDWKKRQDDVGGIEFVLSYNSVPTQKHTVRHIIKRHAKLAGVHDIRIHALRHSHASLLI 249

Query: 299 DAGATAHELMATYGWKTVDQA 319
             G  A  +    G + V   
Sbjct: 250 SMGTNALLIKERLGHEDVQTT 270


>gi|171057457|ref|YP_001789806.1| integrase family protein [Leptothrix cholodnii SP-6]
 gi|170774902|gb|ACB33041.1| integrase family protein [Leptothrix cholodnii SP-6]
          Length = 337

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 49/307 (15%), Positives = 97/307 (31%), Gaps = 42/307 (13%)

Query: 73  WLISEYRKSA--HWGSLAVNSRISFESYFDQI----IRKSGDFD----YRKITTKHIRSG 122
            L+ ++         +++  +   +             K G          I  + I + 
Sbjct: 14  ALVQQFFTEYLVAQRAVSPRTVACYRDALSLFLGFASHKLGKAPTAMQLADIRPELILAF 73

Query: 123 VES----RKHTPSSAIQFLTSMRVLFKWAVRQEY-----VAINPCLSVERPKRKTEGIRP 173
           ++     RK+T  S    LT++R   K+A R++      +     L+V   + +   +  
Sbjct: 74  LDHLEQGRKNTVRSRNLRLTALRAFLKFAARRDVTALHDIER--ALAVPMKRFERPMLGF 131

Query: 174 WTKEDMQQFKSFWSEG---SQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQK 228
            T+ +M        E     +  L    L  +G R S+     V  +            K
Sbjct: 132 LTRPEMLAVLGQPGENWSSQRDHLLLAMLYNTGARVSEMIGVRVVDVILDGGACVHLHGK 191

Query: 229 TGTIITVELPD----GFMKLLAMTPI--GKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
              + ++ L           L + P+  G+     N D Q M  +  +       T+A  
Sbjct: 192 GRKLRSIPLWKSTVVEIRAWLRLNPVLRGEAALLPNRDGQAMCRSNVTQRLSLAVTRATA 251

Query: 283 NK--------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIK 334
            +        S H +R  SA     +G   + +    G ++      Y   AD   +  K
Sbjct: 252 EQPSLATKRVSPHTLRHTSAMHLLQSGVPFNVIALWLGHESTTTTHRYV-EADLA-MKEK 309

Query: 335 NSRRISS 341
              R+ +
Sbjct: 310 ALARLEA 316


>gi|168184262|ref|ZP_02618926.1| XerC/D integrase-recombinase protein [Clostridium botulinum Bf]
 gi|182672603|gb|EDT84564.1| XerC/D integrase-recombinase protein [Clostridium botulinum Bf]
          Length = 320

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 45/278 (16%), Positives = 94/278 (33%), Gaps = 34/278 (12%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESY--FDQIIRKSGDFDYRKITTKHIRS---GVE 124
           T+  +  +Y            +  S E +  ++ I   + D + +++T + I      + 
Sbjct: 16  TVGEIYEDYLNYCTSIGQREKTIESKERFGKYELIKVVNLDSNIKELTKEKIEKHIINMR 75

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
              +  ++   ++  +R    +     Y+      +V+ P    E    +T+E++ +   
Sbjct: 76  KEGYKGNTYQTYIIKIRAFLSYCFNNNYLTK---FTVKIPNVLLEKKEVYTEEEVIKLLK 132

Query: 185 FWSEGS------QPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVE 236
             +  +      +      FLL +G R        V+ +    +    +  KT   ITV 
Sbjct: 133 KPNINTCLVGDFRSWAICSFLLSTGCRAETLLNVHVEDVNFSTDSILFRHMKTKRQITVP 192

Query: 237 LPDGFMKLL-----AMTPIGKETFFINNDKQKMNATQ----FSIWFKAKATKAGVNKSAH 287
           L +     L      M    ++  F   + +KM           +FK +      N   H
Sbjct: 193 LSNTLKVNLMEYIQRMGLKQEDYLFPLLNGEKMKYDTCHQNLKNYFKHR------NVKFH 246

Query: 288 G---VRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           G    R   AT++   GA  + +    G   +   E Y
Sbjct: 247 GVNTFRNTFATMALKNGAGIYLVQKCLGHADIKMTERY 284


>gi|157370504|ref|YP_001478493.1| integrase family protein [Serratia proteamaculans 568]
 gi|157322268|gb|ABV41365.1| integrase family protein [Serratia proteamaculans 568]
          Length = 428

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 44/273 (16%), Positives = 87/273 (31%), Gaps = 51/273 (18%)

Query: 96  ESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS------SAIQFLTSMRVLFKWAVR 149
           E   ++I ++      +++ T+  +  +  ++ +        +   ++  MR +F +AV 
Sbjct: 118 ERKINEIRQEDILLARKRMLTEPQQPKIHEKRKSVRQGRAVPTVNSYMFCMRAIFDFAVS 177

Query: 150 QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDS 209
             Y+A NP   V   K++     P TKE+ Q+         Q R      + +GLR  + 
Sbjct: 178 NGYIANNPFEGVSPLKKQRPAPDPLTKEEYQRVIVSCPT-QQMRNMITLAINTGLRHGEL 236

Query: 210 CRAGVQHLQNNIF------------SIKTQKTG--------TIITVELPDGFMKLLAMTP 249
                + L    +                 KT         T + +E     M L  ++ 
Sbjct: 237 YALAWEDLDTQNWTISISRNLSLKEHFTLPKTDAGMRTIQLTTVAIEAIKSQMALTRLSN 296

Query: 250 IGKETFFINNDKQKMNAT-----------------------QFSIWFKAKATKAGVNKS- 285
             + T  +    +K                            F+  +K    KAGV    
Sbjct: 297 AHRVTVNLREYGKKRTDDCTFIFSPRITSRNGSSADWYSPGAFNGAWKTILRKAGVKHRK 356

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           ++  R   A  +   GA  + +    G  +   
Sbjct: 357 SYETRHTFACWALSCGANPNFVAHQMGHSSAQM 389


>gi|150401987|ref|YP_001329281.1| phage integrase family protein [Methanococcus maripaludis C7]
 gi|159906222|ref|YP_001549884.1| integrase family protein [Methanococcus maripaludis C6]
 gi|150033017|gb|ABR65130.1| phage integrase family protein [Methanococcus maripaludis C7]
 gi|159887715|gb|ABX02652.1| integrase family protein [Methanococcus maripaludis C6]
          Length = 340

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 44/346 (12%), Positives = 116/346 (33%), Gaps = 48/346 (13%)

Query: 33  IRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSR 92
           ++ P  H    +      +      +E+      K   +  L+ E+ +   + ++   + 
Sbjct: 3   VKFPKTHYGDIMDDITDMILLKKDSKEHTAPNDTKKLEIDKLVDEFSEQRRFDNIKEATI 62

Query: 93  ---ISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHTPSSAIQFLTSMRVLFK 145
                    F + I  + +     +T +   +        R  + ++  ++   ++V ++
Sbjct: 63  SNDNDRIRVFLRYIYYTLNKTPETLTNRDYMAFFTYVKRERNCSDNTVNKYFKLLKVFYR 122

Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE--------------GSQ 191
               + +              +++  + +++ D++ + +   +              G++
Sbjct: 123 LMKFKNFSDFV---------VESKERKRFSRFDIKHYDAIDEDTLNQVLVKLLKSNSGTK 173

Query: 192 PRLA-FEFLLY-SGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLL-- 245
            R A F  LL+ +G R S++C        L   +F +   KT    TV      +KLL  
Sbjct: 174 IRDATFIRLLWDTGCRVSEACNLTYSASDLNKGVFKLTHTKTKQDRTVVCSKETLKLLNY 233

Query: 246 ----AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--------AHGVRKFS 293
                     ++  F + +  K+N    S  F+    +   + +         H +R   
Sbjct: 234 FLQHDPDNSPEDHLFKSANGAKLNKYTLSARFRNIVKELKKDGTVPKNQWLVIHSLRHGR 293

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
           A    + G +   +    G  +++    Y+   +R    +    +I
Sbjct: 294 AVDLLNKGVSIDVVKEYLGHASIETTLIYSHSTERKNKMLDQISKI 339


>gi|83720961|ref|YP_443726.1| phage integrase family site specific recombinase [Burkholderia
           thailandensis E264]
 gi|83654786|gb|ABC38849.1| site-specific recombinase, phage integrase family [Burkholderia
           thailandensis E264]
          Length = 409

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 40/295 (13%), Positives = 98/295 (33%), Gaps = 25/295 (8%)

Query: 60  YINSPRKKPTTLKWL-----ISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRK 113
            +   RK   T K L      + Y         +   + + +   ++ +    G     +
Sbjct: 87  PVADARKDRGTTKALNTVREFAAYWLEQQMADKSAEYQRTTKRALEKDVFPALGSKPVSE 146

Query: 114 ITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV--ERPKRKTE 169
           +T   + +  +  K    P  A+     ++ ++++A+ ++ V INP  +V       +  
Sbjct: 147 VTPGDVLAICDRIKKRGAPKMALHTRNVIKRMYEYAIARQLVTINPAQAVVARFIATQES 206

Query: 170 GIRPWTKEDMQQFKSFWSEGSQPR---LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK- 225
             R  + +++          S  R   LA   L+ + +R S+   A       +    + 
Sbjct: 207 RDRVLSPDELGHVLRVVYASSIRRPLKLAIHLLVLTMVRKSELIEARWSEFDLDAAVWRI 266

Query: 226 ---TQKTGTIITVELPDG---FMKLLAMTPIGKETFFINNDK--QKMNATQFSIWFKAKA 277
                K      V L       ++ L  T   ++  F ++    + +  +  +   +A  
Sbjct: 267 PSDRMKKPREHWVYLAPQAVLMLRELYETRTSQQYVFPSSRGADRPIAKSTLNQAVRALD 326

Query: 278 TKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG--ADRIR 330
            +   +   H  R+ ++T   + G  +  +              Y +   A++ R
Sbjct: 327 MEVQ-HFVLHDFRRTASTHLHEMGQPSDAIEKALSHTITGIKGVYNRAEYAEQRR 380


>gi|300974597|ref|ZP_07172658.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 45-1]
 gi|300410539|gb|EFJ94077.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 45-1]
 gi|315291025|gb|EFU50390.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 153-1]
          Length = 339

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 53/304 (17%), Positives = 101/304 (33%), Gaps = 33/304 (10%)

Query: 59  EYINSPRKKPTTLKWLISEYRKSAHWG----SLAVNSRISFESYFDQIIRKSGDFDYRKI 114
           E  ++ +++   LK  +  Y K          +A  +          ++ + G+   +++
Sbjct: 40  ESPSATKRRGIRLKAWVDRYLKIQDTRLKNGDIAATTHKEKTRMAAYLVSRLGNHPLKEL 99

Query: 115 TTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAI--NPCLSVERPKRKTEG 170
             +     ++    K   S+A         ++K A     V    NP  +  +P  K   
Sbjct: 100 EVRDFALILDEWLDKDMVSTARVNRGLWVDIYKEAQHAGEVPPGWNPPEATRKPIPKVTR 159

Query: 171 IRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
            R  T ED Q+  +   E    R A    + +G R  D C      + N    I   KTG
Sbjct: 160 AR-LTMEDWQKIYNATPEKHFIRNAMLLAIVTGQRRDDICHMRFSDVWNEHLHITQGKTG 218

Query: 231 TIITVELPDG-------FMKLLA-MTPIGKETFFINNDK----QKMNATQFSIWFKAKAT 278
             + + L            +++          + I++      + M+    S +F     
Sbjct: 219 MRLALPLTLRCDAIGITLKEVIDGCRDRILSPYLIHSRHQKQPKPMSKDNLSDYFAKARD 278

Query: 279 KAGV-------NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY--TKGADRI 329
            AG+       + + H  R  S  +    G     L    G K     + Y  T+G + +
Sbjct: 279 LAGIIPPAGKTSPTFHEQRSLSERLYRAQGIDTKTL---LGHKVQATTDRYNDTRGQEWV 335

Query: 330 RLGI 333
           +L I
Sbjct: 336 KLVI 339


>gi|293604462|ref|ZP_06686868.1| phage integrase [Achromobacter piechaudii ATCC 43553]
 gi|292817141|gb|EFF76216.1| phage integrase [Achromobacter piechaudii ATCC 43553]
          Length = 438

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 47/318 (14%), Positives = 94/318 (29%), Gaps = 42/318 (13%)

Query: 44  IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII 103
           + A + A       +       +   T+ WL+ +YR       LA NS+  +E    +I+
Sbjct: 79  LRAMIDAGKDPAADKREAKQKARTAKTIDWLVDDYRA-KVLRHLAPNSQTLYERQLRRIV 137

Query: 104 RKSGDFDYRKITTKHIRSGVESRKHT-------PSSAIQFLTSMRVLFKWAVRQEYVAIN 156
           +         +    +   + + K                    R +FK A  Q  + +N
Sbjct: 138 KAWRGRAVEGLAPGDVIDVIRATKGGFTTDTGGWRETEALYIITREVFKHAAGQHIIQVN 197

Query: 157 PCLSV-------ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDS 209
           P + +       +RPK K   +   T E++           Q +L+   ++ + +R S+ 
Sbjct: 198 PAMGISLESLIGKRPKPKVRLM--LTDEELALVMRAAGMNRQNQLSVWIVMATCVRVSEF 255

Query: 210 CRAGVQHLQ----------NNIFSIKTQKTGTIITVELPDGFMKLLA-----------MT 248
             A  +H++            ++ I   KTG  + + L    M+              + 
Sbjct: 256 TTALREHVRTDEHTIKRLGAGVWHIPASKTGPAMDIPLAPPVMEWFRELDALALDSRYIV 315

Query: 249 PIGKETFFINNDKQ-KMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATISADAGATA 304
           P         N     +               A  +    + H +R  + +     G   
Sbjct: 316 PARSVARLRKNGGDAPVGKDAVWGAIGYWLENAKPDVRRFTPHDLRSTAKSHMRALGVDR 375

Query: 305 HELMATYGWKTVDQAETY 322
                    K       Y
Sbjct: 376 DISEMCLNHKLKGVEGIY 393


>gi|288799612|ref|ZP_06405071.1| integrase [Prevotella sp. oral taxon 299 str. F0039]
 gi|288332860|gb|EFC71339.1| integrase [Prevotella sp. oral taxon 299 str. F0039]
          Length = 410

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 46/272 (16%), Positives = 91/272 (33%), Gaps = 31/272 (11%)

Query: 94  SFESYF-DQIIRKSG--DFDYRKITTKHIRSGVESRKHTPSSAIQF----LTSMRVLFKW 146
               +F + +I K G  D    + T   ++            A       + +++ +  +
Sbjct: 138 VLRRHFSEFLIHKYGRKDIGLTEFTPSVVQDFELYLSTVAGCAYNTSVKKMKALKTVTIY 197

Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ---PRLAFEFLLYSG 203
           A ++ Y+  +P L+  R   +       T E++ +  +      +    R  F F  ++G
Sbjct: 198 AQKRGYLLHDPFLN-HRFHLEPVNRGFLTDEEIMKIVNKDLAIQRLELVRDVFIFSCFTG 256

Query: 204 LRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDGFMKLLAMTP-----IGKET 254
           L   D       ++           K QKT     V L D    ++A         GK  
Sbjct: 257 LAYIDVSNLTPDNIVTLDDKQWIMTKRQKTSVETNVLLLDIPKSIIAKYSHKTYRDGKLF 316

Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYG 312
             + N K        + + K  A   GV K  + H  R   AT+S   G     +    G
Sbjct: 317 PILTNQKT-------NAYLKEIADLCGVKKNLTFHLARHTFATMSLSKGVPMESVSKMLG 369

Query: 313 WKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
              +   + Y +  ++      +  +++  +D
Sbjct: 370 HTNIKTTQIYARITNKK--IEHDMEQLAGKLD 399


>gi|288801169|ref|ZP_06406624.1| integrase [Prevotella sp. oral taxon 299 str. F0039]
 gi|288331780|gb|EFC70263.1| integrase [Prevotella sp. oral taxon 299 str. F0039]
          Length = 439

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 50/275 (18%), Positives = 94/275 (34%), Gaps = 26/275 (9%)

Query: 97  SYFDQIIRKSG--DFDYRKITTKHIRSGV---ESRKHTPSSAIQFLTSMRVLFKWAVRQE 151
               + I+  G  D + R IT +         + +    SS   +L  +  L   AV Q 
Sbjct: 137 RMLCEFIKDLGSTDIEIRSITEELFEEYRFFLKKKGLKGSSINNYLCWLSRLMFRAVSQR 196

Query: 152 YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WSEGSQPRLAFEFLLYSGLRCSD 208
            +  NP    E  K + + IR  +K D+++  +     S+    R  F F  ++GL  +D
Sbjct: 197 IIRYNPFEHAEYEKVE-KAIRFLSKSDVKKLMAMKICDSDAELARQMFIFSCFTGLAITD 255

Query: 209 SCRAGVQHLQ---NNIFSIK--TQKTGTIITVELPDGFMKLL-------AMTPIGKETFF 256
                  H++   +    I+   QKT     V L      ++       A+   G  T  
Sbjct: 256 MEHLTFGHIKSAADGQMYIRKERQKTKVEFIVPLHPIAKTIIEQQRQLKAVKEEGNNTDM 315

Query: 257 INN--DKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYG 312
            N    +   + +  +          G+    S H  R    T+   AG     +    G
Sbjct: 316 DNRLIFQPCCSRSVLAAKLSIVGKACGIKQRLSYHMGRHTFGTMCLSAGIPIESIAKMMG 375

Query: 313 WKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
             ++   + Y +  D  ++     + I+   + + 
Sbjct: 376 HTSIASTQIYAQVTD-CKISEDMDKLIAKHQEKNK 409


>gi|167851460|ref|ZP_02476968.1| integrase family protein [Burkholderia pseudomallei B7210]
          Length = 589

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 69/366 (18%), Positives = 119/366 (32%), Gaps = 73/366 (19%)

Query: 44  IPAYMSAL-TGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI 102
            P Y SA  +G+               T+   I  +    H   L+  +   ++  F  +
Sbjct: 203 DPLYRSANGSGAPTAAASGAVAAGNSITIDEAIERFENDPHRAKLSKKNINGYKPGFALL 262

Query: 103 IRKSG-DFDYRKITTKHIRSGVESRKHTPSSAIQ-------------------------- 135
               G D     +T +H R   E  +H P +A +                          
Sbjct: 263 REIVGGDAPLAAVTREHARKVQEILEHLPPNATKRFPKMTLIEAADYAKKDVMPPITAKT 322

Query: 136 ---FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT---EGIRPWTKEDM------QQFK 183
               L++    F WAVR+  +   P   ++  ++K    E  +P++  D+        F+
Sbjct: 323 ADVLLSNFSSFFAWAVREHLIDRTPAAGLQALQKKRSNEESRQPFSDADLMRLFSADLFR 382

Query: 184 SFW---SEGSQPRLAF-EFLLYSGLRCSDSCRAGVQHL--QNNI--FSIKTQ-------- 227
             W   SE  Q R       LY G R ++ C+  V  +   + I    I+ +        
Sbjct: 383 EPWRCISEREQGRYWVPLLALYHGARLNELCQLEVFDVGTDDGIPYLHIREESAAGEEKH 442

Query: 228 -KTG-TIITVELPDGFMKL------LAMTPIGKETFF--INNDKQKMNATQFSIWFKAKA 277
            KT      + +      L       A    G +  F  +        +  FS WF   +
Sbjct: 443 LKTSNAERIIPVHAVLRLLGFMEYVEATRNAGHDRLFPKLTKSANGYYSDNFSKWFARFS 502

Query: 278 TKAGVN---KSAHGVRKFSATISADAGATAHEL-MATYGWKTVDQ--AETYTKGADRIRL 331
            K GV     + H  R      +A A     ++  A  GW   ++  +E Y KG    R 
Sbjct: 503 DKQGVTDSRLTFHSFRHRF-RDAARAVDIPRDIAQALGGWSDGEESASEGYGKGYTLSRK 561

Query: 332 GIKNSR 337
             + ++
Sbjct: 562 AAELAK 567


>gi|149921212|ref|ZP_01909669.1| Phage integrase [Plesiocystis pacifica SIR-1]
 gi|149817983|gb|EDM77443.1| Phage integrase [Plesiocystis pacifica SIR-1]
          Length = 401

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 34/269 (12%), Positives = 79/269 (29%), Gaps = 32/269 (11%)

Query: 90  NSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES---------RKHTP---SSAIQFL 137
           N+R    ++   I    GD    +I + H      +         RK  P    +    L
Sbjct: 95  NTRSVLSAHILPI---LGDVAMDEIRSVHFGELKRAVARGRGTRGRKSKPVSGKTINNAL 151

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE 197
             +  + ++   +E +   P +     +        +  E+ +   +  ++     L   
Sbjct: 152 AVLSRMVRFWYEREGLMP-PRIKAGLVRLDEPEADYYEPEEFEALVAGAAKAGLQELVIV 210

Query: 198 FLLY-SGLRCSDSCRAGVQHLQ---NNIFSIKTQ---------KTGTIITVELPDGFMKL 244
            L+  +G+R  +        ++        ++           K+    ++ L    +  
Sbjct: 211 LLMGDAGMRQGEIRALHWSDIRKHPEPTIRVQRTRFKADEYAPKSKKGRSIPLSPRLVAA 270

Query: 245 LAMTPIGKETF-FINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAG 301
           L   P  +     I+   + +               AG+ ++  +H +R   AT    AG
Sbjct: 271 LEALPRRRGCPHVIHEAGEPLTPKLVRGRIVRCERAAGMAETGLSHKLRHTFATRLVAAG 330

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIR 330
                +    G   +   + Y       R
Sbjct: 331 VPLLVIKELLGHADLRTTQRYLHTVSGAR 359


>gi|86150256|ref|ZP_01068483.1| site-specific recombinase, phage integrase family [Campylobacter
           jejuni subsp. jejuni CF93-6]
 gi|88597569|ref|ZP_01100803.1| site-specific recombinase, phage integrase family [Campylobacter
           jejuni subsp. jejuni 84-25]
 gi|218562491|ref|YP_002344270.1| DNA recombinase [Campylobacter jejuni subsp. jejuni NCTC 11168]
 gi|85839372|gb|EAQ56634.1| site-specific recombinase, phage integrase family [Campylobacter
           jejuni subsp. jejuni CF93-6]
 gi|88190161|gb|EAQ94136.1| site-specific recombinase, phage integrase family [Campylobacter
           jejuni subsp. jejuni 84-25]
 gi|112360197|emb|CAL34991.1| DNA recombinase [Campylobacter jejuni subsp. jejuni NCTC 11168]
 gi|284926106|gb|ADC28458.1| DNA recombinase [Campylobacter jejuni subsp. jejuni IA3902]
 gi|315926491|gb|EFV05873.1| phage integrase family protein [Campylobacter jejuni subsp. jejuni
           DFVF1099]
          Length = 354

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 41/286 (14%), Positives = 93/286 (32%), Gaps = 52/286 (18%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           LI E   S   G+L+  S+ ++            D    +    HI              
Sbjct: 102 LIVEVLASIT-GALSDASKKNYRIAVINFFDFL-DKQNEEDEKAHIFDI----------- 148

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS--- 190
                    L  WA             V+ P+  ++       E++++F           
Sbjct: 149 --------NLKNWAGIAG------SKGVKLPEFMSK-------EELKKFLDAIENADFKN 187

Query: 191 ---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVE----LPD 239
              + +L  + ++++G+R S++    +  +       I  I+ +     + +     + D
Sbjct: 188 NTIRNKLIIKIIIFTGIRVSEAINIKMGDISEENDLYIIRIRAKGNKYRVVMIKKELIYD 247

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATI 296
               +           F+N     +  +  S   +    +AG+ K    AH +R   AT+
Sbjct: 248 LLKNVSINYISKDALLFVNKKGTPLTQSYVSRIVEQLLFRAGIRKQKNGAHMLRHTFATL 307

Query: 297 SADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSRRISS 341
                     +    G  +++ +  YT    D+++L  + ++ +S 
Sbjct: 308 LYKKQKDLVLVQEALGHASLNTSRIYTHFDNDKLKLAAQVAKELSD 353


>gi|328884022|emb|CCA57261.1| hypothetical protein SVEN_3975 [Streptomyces venezuelae ATCC 10712]
          Length = 398

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 55/333 (16%), Positives = 107/333 (32%), Gaps = 42/333 (12%)

Query: 22  IYYFRK-GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI-SEYR 79
            +  R  G   + +     +     A + A+T    K  Y +    K  T   L+  E+ 
Sbjct: 37  RWRVRWYGPDGKGKAKTFGKLPQAEAEVHAITARLDKGSYRDPRSGKAAT--SLVAEEWF 94

Query: 80  KSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSS------ 132
           K+      +  ++  +    D  +I K GD+    I    + + V+   + P +      
Sbjct: 95  KTLR--KQSRRTKNDYRELLDLYVIPKWGDWQVAAIQWDDVSTWVDDLINKPGASGRPLS 152

Query: 133 ---AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR-KTEGIRPWTKEDMQQFKSFWSE 188
                +       + K A+R   +A+NP      P+  + +     T + ++       +
Sbjct: 153 PGRIAKTFYVFGGVMKHAIRTHRIAVNPASEHTLPRPDEDDEHVYLTHDQVEALAEAAGD 212

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAG--VQHLQNNIFSIKTQ-------------KTGTII 233
               RL    L YSG+R  ++        ++      I                K     
Sbjct: 213 H---RLLVLVLAYSGIRWGEAIAIKASRFNVDTRRIRIVQAYSDVNGKLELGPVKNHEKR 269

Query: 234 TVELPDGFMKLLAMTPIG---KETFFINNDKQKMNATQFSIW-FKAKATKAGVN---KSA 286
           +V +P  F + L     G    +  F       +    F    F      AG+     + 
Sbjct: 270 SVPVPRSFAEELRPLLDGRRRDDLVFTAPQGGPLRYRNFRQRAFDKAVVAAGLGDLGITP 329

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQA 319
           H +R  +A+++  AGA    +    G K+    
Sbjct: 330 HKLRHTAASLAIAAGADVKVVQTMLGHKSAAMT 362


>gi|313633842|gb|EFS00566.1| DNA integrase [Listeria seeligeri FSL N1-067]
          Length = 359

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 59/356 (16%), Positives = 109/356 (30%), Gaps = 55/356 (15%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
           +P +  +++       YY      R  +L    ++                   + S   
Sbjct: 1   MPAYRDEDKGNWFASFYYQDWKGKRVKKLKRGFKTKKEAQEW-------ENSFKLQSENS 53

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVES 125
                K  ++ Y KS     +  N+ IS E   + +II   G+    +I    I      
Sbjct: 54  LDMKFKDFVNIY-KSDIKTRIKYNTWISKEYIINLKIIPAFGERKINEIKPSDIIQWQNE 112

Query: 126 ---------RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE--RPKRKTEGIRPW 174
                    +  +P+        +  +F  AVR   +  NP  +V     K+  + +  W
Sbjct: 113 LIGYKNEQGKGFSPTYLKAIHNQLTAIFNHAVRFYDLKSNPARTVGCMGSKKSDKEMLVW 172

Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---------------- 218
           TKE+  +F     +      AFE L + G+R  +                          
Sbjct: 173 TKEEYLKFSDSMMDKDISFHAFEILYWCGIRVGELLALTPTDFNFAEGTVSITKSYQRIK 232

Query: 219 -NNIFSIKTQKTGTIITVELPDGF--------MKLLAMTPIGKETFFINNDKQKMNATQF 269
             +I +    + G  I + +PD           +L    P  K   F       +     
Sbjct: 233 GEDIITTPKTEKGKRI-INMPDFLVDEMQDYIKRLYGCKP--KSRIF------PVTKAVL 283

Query: 270 SIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
               K  A +  + K   H +R    ++  D G +A  +    G +++D    Y  
Sbjct: 284 YSEMKRGAMEQNIKKIRIHDLRHSHVSLLIDMGFSAVAIADRVGHESIDIIYHYAH 339


>gi|315122559|ref|YP_004063048.1| Integrase [Candidatus Liberibacter solanacearum CLso-ZC1]
 gi|313495961|gb|ADR52560.1| Integrase [Candidatus Liberibacter solanacearum CLso-ZC1]
          Length = 90

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 26/82 (31%), Positives = 46/82 (56%)

Query: 148 VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCS 207
           + +  V  +  + V+ PK K +    W  E+++Q++ F   G++ RLA E +L+ GLR S
Sbjct: 2   LERNIVKADSTVGVKSPKLKIKEFVTWMIENIEQYRRFHPIGTKARLAMEMMLFLGLRRS 61

Query: 208 DSCRAGVQHLQNNIFSIKTQKT 229
           D  R G QH+++  F  K ++ 
Sbjct: 62  DVMRVGKQHIKDGFFRSKLKRK 83


>gi|306834506|ref|ZP_07467619.1| phage integrase family integrase/recombinase [Streptococcus bovis
           ATCC 700338]
 gi|304423308|gb|EFM26461.1| phage integrase family integrase/recombinase [Streptococcus bovis
           ATCC 700338]
          Length = 388

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 46/277 (16%), Positives = 91/277 (32%), Gaps = 44/277 (15%)

Query: 87  LAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSS--------AIQFL 137
           + +N+R + E      ++   GD+   K+TT  I+  V    +  +           Q  
Sbjct: 85  VKINTRKAVEGQIRVHLLPAFGDYKLEKLTTPIIQQQVNKWANDYNKGKKGSYKHYNQLH 144

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG---IRPWTKEDMQQFKSFWSEGSQPR- 193
              + + ++AV  + +  NP   V  P++K      I+   K++++QF  +     + + 
Sbjct: 145 ALNKRILQYAVIMQLIPFNPAREVIVPRKKQTEEIKIKFLDKQELKQFYDYLDTLDKSKY 204

Query: 194 ------LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-VELPDGFMKLLA 246
                 + ++ LL +G R  +        +  +   I   KT      V  P        
Sbjct: 205 YNLFDVVLYKTLLATGCRIGEVLALEWSDIDLDNGYISINKTLNRDDEVNCPKSKAGYRD 264

Query: 247 MTPIGKETFFINNDKQKMNATQ-----------------------FSIWFKAKATKAGVN 283
           ++        + + K +                                 +     AGV+
Sbjct: 265 ISIDKATILMLKHYKNRQTIQAWQHKRTETVVFSTFVNKYASQPALRRRLERHLKNAGVS 324

Query: 284 KSA-HGVRKFSATISADAGATAHELMATYGWKTVDQA 319
             A HG+R   ATI  +AG    +L    G   +   
Sbjct: 325 YVAFHGLRHTHATIMLNAGIQPKDLQYRLGHSNISMT 361


>gi|304382636|ref|ZP_07365130.1| integrase [Prevotella marshii DSM 16973]
 gi|304336261|gb|EFM02503.1| integrase [Prevotella marshii DSM 16973]
          Length = 429

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 41/264 (15%), Positives = 91/264 (34%), Gaps = 24/264 (9%)

Query: 86  SLAVNSRISF---ESYF-DQIIRKSGDFDYRKITTKHIRSGVESR-------KHTPSSAI 134
           S+   +   +   + +F + +  K G  D R ++        +            P++A 
Sbjct: 146 SVEAATLQKYNVCKKHFSNFLRDKYGRSDIR-LSELGYIVIHDFDIYLRTVVGQNPNTAT 204

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-WSEGSQP- 192
           + + + + +     +   +  +P L++ R   +       T E++ +  +  +  G    
Sbjct: 205 RMMKTFKTITILGRKLGVLHHDPFLNI-RFHMEPVNRGFLTDEEILKIANKDFGIGRLEL 263

Query: 193 -RLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
            R  F F  ++GL   D      +++           K QKT     V L D    ++A 
Sbjct: 264 VRDVFVFSCFTGLAYIDVYNLAPENIVTLNGKQWIMTKRQKTSVETNVLLLDIPKSIIA- 322

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAH 305
                +T+        +   + + + K  A   G+ K  + H  R   AT+S   G    
Sbjct: 323 -KYSGKTYRDGKLFPMLTNQKLNSYLKEIADICGIKKNLTFHLARHTFATMSLSKGVPIE 381

Query: 306 ELMATYGWKTVDQAETYTKGADRI 329
            +    G   +   + Y +  ++ 
Sbjct: 382 SVSKMLGHTNIKTTQLYARITNKK 405


>gi|304415198|ref|ZP_07395910.1| putative phage integrase [Candidatus Regiella insecticola LSR1]
 gi|304282945|gb|EFL91396.1| putative phage integrase [Candidatus Regiella insecticola LSR1]
          Length = 354

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 47/305 (15%), Positives = 101/305 (33%), Gaps = 42/305 (13%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR-KSGDF 109
                 +    NS   +  T+  L+  Y    + G  A  ++       D ++     D 
Sbjct: 54  RAAELEENGVPNSSDIEKITVGELLKRYINDPNLGGKAGRTK---RYVLDMLLDCDIADT 110

Query: 110 DYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAV---RQEYVAINPCLSVER 163
               ++T H+      R      PS+    ++ +  +   A      +Y+  NP      
Sbjct: 111 LLADLSTSHVIEYCRHRNGAGAGPSTVNHDVSYLSSVLASAKPVYGIDYI-ANPATDARP 169

Query: 164 P--------KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA-------FEFLLYSGLRCSD 208
                    K K    RP + +++ +        S    A         F + S +R  +
Sbjct: 170 LLLQMGLIGKSKRRSRRPVS-DELDRLLVGLEARSGHVAAKIPFVDILNFSILSCMRVGE 228

Query: 209 SCRAGVQHLQNNIFSI-------KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK 261
            C+   + +     ++         +K+G  + V L      ++   P   E  F     
Sbjct: 229 VCKIRWEDIDEKQKAVLVRDRKDPRKKSGNHMLVPLLGDAWTIVQHQPKTSELIF----- 283

Query: 262 QKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA- 319
              N+   +  F+      G+ +   H +R+  A+   +AG +  E+    G ++++   
Sbjct: 284 -PYNSRSVTAGFQRVRNALGIKDLRYHDLRREGASRLFEAGFSIEEVAQITGHRSLNVLW 342

Query: 320 ETYTK 324
           + YT+
Sbjct: 343 QVYTE 347


>gi|29349429|ref|NP_812932.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
 gi|29341338|gb|AAO79126.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
          Length = 403

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 44/255 (17%), Positives = 83/255 (32%), Gaps = 27/255 (10%)

Query: 95  FESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKH----TPSSAIQFLTSMRVLFKWAV 148
           ++ Y    +   G  D    ++T    +S     K       S     L  +  L   AV
Sbjct: 134 YQKYLTDFLTSIGKKDIPLEEVTEDFGKSYKAHLKKCKNFGASQTNHCLRWLNRLLYLAV 193

Query: 149 RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS---FWSEGSQPRLAFEFLLYSGLR 205
            +E + +NPC  +E   +     R  ++E+ ++  S   +       R AF F   +GL 
Sbjct: 194 DKEILRVNPCEDLEYETKPEARHRYISREEFKKILSTPMYDKRMELARRAFIFSTLTGLA 253

Query: 206 CSDSCRAGVQHLQNNI-----FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINND 260
             D       H+  N        I  +KT     + L     ++L         +   +D
Sbjct: 254 YVDIKLLHPHHIGTNADGRRYIRINRKKTKVEAFIPLHPIAERIL-------SLYNTTDD 306

Query: 261 KQKMNA--TQFSIWFKAKATKAGVNK----SAHGVRKFSATISADAGATAHELMATYGWK 314
           ++ +     + ++WF+       + K    + H  R    T    A      +    G  
Sbjct: 307 EKPVFPLPNRDALWFEVHELGITIGKEENLTYHQSRHSFGTFLISADIPIESIAKMMGHS 366

Query: 315 TVDQAETYTKGADRI 329
            +   + Y +  D  
Sbjct: 367 NIRTTQGYARITDDK 381


>gi|229552312|ref|ZP_04441037.1| bacteriophage integrase [Lactobacillus rhamnosus LMS2-1]
 gi|229314294|gb|EEN80267.1| bacteriophage integrase [Lactobacillus rhamnosus LMS2-1]
          Length = 389

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 42/321 (13%), Positives = 96/321 (29%), Gaps = 42/321 (13%)

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
              P K       +  E+ KS        +   + + +   I+   GD    KIT + ++
Sbjct: 64  APRPDKVARKFNDVYEEWLKSYKLTVRESSWSKTRDCFNLHILPDLGDMYIDKITPQDVQ 123

Query: 121 SGVESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG---IRPWTK 176
           + V    K +P +  ++   +  +  +A  ++Y+  NP   +  P+ + +       W +
Sbjct: 124 AAVNKWFKQSPVAFKRYFVHINRILTYAELRDYIPHNPARRIILPRVQDKIGSTNDFWDR 183

Query: 177 EDMQQFKSFW--SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT----- 229
             ++ F +           + F  L Y+GLR  ++     + +      I   KT     
Sbjct: 184 RQLEVFFNCINPDRELYKYVLFRILAYAGLRIGEAMALEWEDIDFKKRLISVNKTVSLGV 243

Query: 230 ------------GTIITVELP----DGFMKLLAMTP----------IGKETFFINNDKQK 263
                        +   V +     +   +     P             +  F      +
Sbjct: 244 HGKLIVNPPKTRASRRDVPVDSETINWLKRWRIEQPDYVYGYVRLSTHHQLLFTTKTGNR 303

Query: 264 MNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-E 320
               +  +W         +    S H  RK   +    AG     +    G        +
Sbjct: 304 FRVDKPRMWLSTIIRNNNLAPVISLHKFRKSYISNLLIAGVAVSTVQKMVGHTDPRITLQ 363

Query: 321 TYTKGADRIRLGIKNSRRISS 341
            Y +        ++ + +++ 
Sbjct: 364 IYARVHQEQE--VEAAEKLAK 382


>gi|25010311|ref|NP_734706.1| hypothetical protein gbs0237 [Streptococcus agalactiae NEM316]
 gi|23094663|emb|CAD45882.1| unknown [Streptococcus agalactiae NEM316]
          Length = 377

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 42/276 (15%), Positives = 91/276 (32%), Gaps = 41/276 (14%)

Query: 90  NSR-ISFESYFDQII---RKSGDFDYRKI--TTKHIRSGVESRKH---TPSSAIQFLTSM 140
           N++  ++  +           G   Y  I    +H+R  V        + ++  + +  +
Sbjct: 85  NTQENNYNKHIKDYFSKVDYVGKLTYEDIYQFREHLRKKVAQNSDNLLSSNTINKIMILL 144

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-SEGSQPRLAFEFL 199
           + +F   +R+ Y + NP   +++   +   ++ WT ++ QQF + +  E    +L F  L
Sbjct: 145 KKIFDIGLRKGYYSTNPVKLLKKLPIEKTKMQFWTVKEFQQFLTLFEPEEYNIKLLFTVL 204

Query: 200 LYSGLRCSDSCRAGVQHLQ---------------NNIFSIKTQKTGTII-TVELPDGFMK 243
            ++GLR  ++     Q +                  I  I T KT      + L     +
Sbjct: 205 FFTGLRLGEALALTWQDIDFSSNTIHITKSVYVNKGISHINTTKTKAGTRRIVLNKKLSQ 264

Query: 244 LLAMTPIGKETFFINNDKQKMNATQFS------------IWFKAKATKAGVNK--SAHGV 289
            L      ++          +    F               +K    +    K    H  
Sbjct: 265 ELQDWQQQQKHLLEQFTSDNLTLQVFQSSPITITKNAIEKQYKKILERDNTLKIIRIHDF 324

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
           R   A++  + G     +    G  ++    +TY+ 
Sbjct: 325 RHSHASLLINQGEDYLVVKERLGHASITTTIDTYSH 360


>gi|317177489|dbj|BAJ55278.1| integrase-recombinase protein [Helicobacter pylori F16]
 gi|317177493|dbj|BAJ55282.1| integrase-recombinase protein [Helicobacter pylori F16]
          Length = 355

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 35/284 (12%), Positives = 93/284 (32%), Gaps = 55/284 (19%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           L++E+  S + G L++ ++ ++      +       +  +    +I              
Sbjct: 101 LLAEFL-SVYTGGLSLATKKNYRIALLGLFSYIDKQNQDENEKSYIY------------- 146

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-------W 186
              L ++  + + A                    ++       E++++F           
Sbjct: 147 NITLKNISGVNQSA-------------------GSKLPTHLNNEELEKFLESIDKIEMSA 187

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDG---- 240
              ++ RL  + ++++G+R +++ +  ++    +N  ++I  +  G      +       
Sbjct: 188 KVHARNRLLIKIIVFTGMRSNEALQLKIKDFTLENGCYTILIKGKGDKYRAVMLKAFHIE 247

Query: 241 --FMKLLAMT---PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKF 292
               + L      P+  +  F N     +         +     AG+ +    AH +R  
Sbjct: 248 SLLKEWLMERELYPVKNDLLFCNQKGSALTQAYLYKQVERIINFAGLRREKNGAHMLRHS 307

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
            AT+          +    G  +++ +  YT   D+ RL    S
Sbjct: 308 FATLLYQKRHDLILVQEALGHASLNTSRIYTH-FDKQRLEEAAS 350


>gi|238026834|ref|YP_002911065.1| Prophage integrase [Burkholderia glumae BGR1]
 gi|237876028|gb|ACR28361.1| Prophage integrase [Burkholderia glumae BGR1]
          Length = 355

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 40/258 (15%), Positives = 78/258 (30%), Gaps = 26/258 (10%)

Query: 92  RISFE---SYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---------TPSSAIQFLTS 139
           +  +     +      + G    R +T + I   + + K           P +  +++ +
Sbjct: 75  QRDYAGKLRHVLYWRERFGAAPVRLLTAERIFDALPTHKLVNGAPTKLLAPGTRNRYINT 134

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199
           +R +    +  E++   P L   R   + +    W    +             R A    
Sbjct: 135 IRRMLNLCLEWEWLDRVPKL---RRFEEPDIRVRWETPAVITRMIGALRLDWMRDAAIVA 191

Query: 200 LYSGLRCSDSCRAGVQHLQ----NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF 255
           + +G+R S+     +  L     N   +    K+    +V L +  M +L          
Sbjct: 192 VATGMRESELFGLRLSQLDLAQCNAWITHAGAKSKRARSVPLNEDAMSVLERRARAATDL 251

Query: 256 FINN-----DKQKMNATQFSIW-FKAKATKAG-VNKSAHGVRKFSATISADAGATAHELM 308
                    +       Q     F      AG V+ + H +R   A+     G     L 
Sbjct: 252 IFTRGYTRDNGPPKLIQQIDKRDFARACAAAGMVDFNWHDLRHTWASWHVQHGTPLMVLK 311

Query: 309 ATYGWKTVDQAETYTKGA 326
              GW+TV   + Y   A
Sbjct: 312 ELGGWETVAMVQKYAHLA 329


>gi|217968814|ref|YP_002354048.1| integrase [Thauera sp. MZ1T]
 gi|217506141|gb|ACK53152.1| integrase family protein [Thauera sp. MZ1T]
          Length = 332

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 43/297 (14%), Positives = 87/297 (29%), Gaps = 35/297 (11%)

Query: 50  ALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF 109
           AL         +   R  P T+      +R    +  + +  + S +  F+QI       
Sbjct: 9   ALLQRFFTDRLMQQRRASPHTIGSYRDTFRLLLRFAQMRLGRQPS-QLAFEQI------- 60

Query: 110 DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWA-----VRQEYVAINPCLSVERP 164
               +    +    + R  T  S    LT++R  F++A        E +     +  +R 
Sbjct: 61  -DAPLIAAFLDELQDKRGITARSRNLRLTAIRSFFRYAAFEAPTHAEQIQRVLAIPSQRF 119

Query: 165 KRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220
            R   G    T+ ++    +        G +        + +GLR S+        +   
Sbjct: 120 TRTQVGF--LTRPEVDALLAAPDRQTWSGRRDHALLLLAVQAGLRLSELTAMRRDTVILG 177

Query: 221 IFS--IKTQKTGTIITVELPDGFMKLLAM-----TPIGKETFFINNDKQKMNATQFSIWF 273
             +  +   K        L      +L             T F +    +++A       
Sbjct: 178 SGAHVLVMGKGRKERATPLTRQTAAVLNAWLKEIPANPDATIFPSARGTRLSADGVQYLL 237

Query: 274 KAKATKAGVNK--------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
                 A  +         + H +R  +A     AG     +    G ++V+  + Y
Sbjct: 238 AKHVAVAARSCPSLAQKRVTPHVLRHTTAMELLQAGVDRAVIALWLGHESVETTQIY 294


>gi|301063295|ref|ZP_07203840.1| phage integrase, N-terminal SAM domain protein [delta
           proteobacterium NaphS2]
 gi|300442592|gb|EFK06812.1| phage integrase, N-terminal SAM domain protein [delta
           proteobacterium NaphS2]
          Length = 430

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 45/310 (14%), Positives = 87/310 (28%), Gaps = 59/310 (19%)

Query: 77  EYRKSAHWGSLA---------VNSRISFESYFDQIIRKSGDFDYRKITTKHIR---SGVE 124
           +Y KS  +              ++R ++        R +G      +    +R     + 
Sbjct: 107 DYAKSEAFEEQLTKWEETLICDSTRKTYLGQVRLFFRWAGKEPKDLLQDDFVRYRDHLLT 166

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINP----CLSVERPKRKTEGIRPWTKEDMQ 180
            RK  P++      ++    K+   +     NP     L++   K+        TK++  
Sbjct: 167 ERKLKPATVWNKFIAINGFLKFMSIRSRKFKNPLNFGALALIPAKKDKGYYSVLTKKEAN 226

Query: 181 QFKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN------IFSIKTQKT- 229
           +           G +       +L  GLR  + C+   + L            I+ +K  
Sbjct: 227 KILKQPDRRTLIGKRDHAILRLMLTYGLRAGEICKLSYKDLDQERVKGQQRIWIRDRKGR 286

Query: 230 ---GTIITVELPDGFMKLLA------------MTPIGKETFFINNDK------------Q 262
                   + L    ++                +PI     +  ND             +
Sbjct: 287 IGRRADTDIILNGKALQAFDDWIENCGIHFESNSPIFAGFIWSINDGGLVVNHAQVREKK 346

Query: 263 KMNATQFSIWFKAKATKAGVN-----KSAHGVRKFSATISADAGATAHELMATYGWKTVD 317
            +               AG+       S H +R  + T+ A AG T  +L    G + V 
Sbjct: 347 PLTVKTIENIVLKYTESAGIENRDRVISPHALRHTALTLLARAGITLVDLKWLAGHQDVS 406

Query: 318 QAETYTKGAD 327
               Y     
Sbjct: 407 TTMIYLHSVQ 416


>gi|282860505|ref|ZP_06269571.1| integrase family protein [Streptomyces sp. ACTE]
 gi|282564241|gb|EFB69777.1| integrase family protein [Streptomyces sp. ACTE]
          Length = 415

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 65/377 (17%), Positives = 107/377 (28%), Gaps = 65/377 (17%)

Query: 20  KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYR 79
           +    +    G      +P     +     A T +   R     PR   TT +     + 
Sbjct: 33  RYRARYVGPDGTEKSKSFPDRQKRLADQWLAHTEADMARGQYIDPRAARTTFQQYAEGWV 92

Query: 80  KSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH---TPSSAIQ 135
            +        N++ S ES          G          HIR  V+  +      S A  
Sbjct: 93  ST---QGADPNTQASMESQLRLHAFPYLGTRPLGSFQPAHIRDWVQQLQANGVRGSYART 149

Query: 136 FLTSMRVLFKWAVRQEYVAINP--CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
             +++R     AV   ++  NP    SV  P   T+ + PWT E +   ++   E  + +
Sbjct: 150 IYSNVRAALSAAVDDGHLPRNPCAARSVRPPTVDTKRVTPWTAERLFAVRAGMPE--RYQ 207

Query: 194 LAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQ-------------KTGTIITVELP 238
              +     GLR  +     V     +++   +  Q             K G +  V LP
Sbjct: 208 AMVDLGGGCGLRQGEILGVAVDAIDFRSDTLHVVQQLKLSRSKPVFAPPKGGKLRDVPLP 267

Query: 239 ----DGFMKLLAMTP---------------IGKETFFINNDKQKMNATQFSI-WFKAKAT 278
               D     +   P               + K   F       +  T  +   +K    
Sbjct: 268 GPVADALRAHMKQFPPVEITLPWKAAGGPLVTKRLIFTGPRGGHVWRTSLNEEAWKPALA 327

Query: 279 KAGVNKSA--------------HGVRKFSATISADAGATAHELMATYGWKTVD-QAETYT 323
            AGV  +               H +R F A++  DAG     L    G          Y 
Sbjct: 328 SAGVIPTPAAGAQHTESRENGMHAMRHFYASVLLDAGENVKALAEYLGHSDPGLTLRVYA 387

Query: 324 K----GADRIRLGIKNS 336
                  +R R  +   
Sbjct: 388 HLMPSSRERTRKAVAAV 404


>gi|256823872|ref|YP_003147834.1| integrase family protein [Cyanothece sp. PCC 8802]
 gi|256592540|gb|ACV03385.1| integrase family protein [Cyanothece sp. PCC 8802]
          Length = 311

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 46/284 (16%), Positives = 102/284 (35%), Gaps = 32/284 (11%)

Query: 85  GSLAVNSRISFESYFDQIIR--KSGDFDY-----RKITTKHIRSGVESR--KHTPSSAIQ 135
            SL   SR++     + I     +G+ DY      K+T +H  +   +   +H P++A +
Sbjct: 26  RSLNPRSRVTMRGALNAIASLLTNGECDYMSLDWAKLTYQHTSAVQAALLERHAPATAAR 85

Query: 136 FLTSMRVLFKWAVRQEYVAIN---PCLSVERPKRKTEGI-RPWTKEDMQQFKSFWS---- 187
            + ++R + K A R   ++ +     + +   +   +   R  ++E+++           
Sbjct: 86  MMCALRRVLKEAKRLGLMSGDDYQTAIDLPSIRESRKLRGRALSQEEIRGLMRVCENDPT 145

Query: 188 -EGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKL 244
            +G +       L  +GLR +++ +  ++    +     I   K      V LP+  + +
Sbjct: 146 TQGIRDAALIAILRGAGLRRAEAVKLQLKDFNQEAGSLQIIGGKGDKDRLVYLPESAISI 205

Query: 245 LAM-----TPIGKETFFINNDK-----QKMNATQFSIWFKAKATKAGVNK-SAHGVRKFS 293
           +                          + M++    +  + +A  AGV   S H  R+  
Sbjct: 206 VNRWLSVRGHSPGALLCPIQKGGRIVIRSMSSQAVLLIVQKRAIAAGVESFSPHDFRRTF 265

Query: 294 ATISADAGATAHELMATYGWKTVDQAETY-TKGADRIRLGIKNS 336
            +   DAG     +    G  +      Y  +G    R  ++N 
Sbjct: 266 CSDLLDAGVDIVTVQKLAGHASPVTTAKYDRRGEAVKRRAVQNL 309


>gi|225163642|ref|ZP_03725947.1| Site-specific recombinase XerD-like protein [Opitutaceae bacterium
           TAV2]
 gi|224801716|gb|EEG20007.1| Site-specific recombinase XerD-like protein [Opitutaceae bacterium
           TAV2]
          Length = 429

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 61/336 (18%), Positives = 106/336 (31%), Gaps = 36/336 (10%)

Query: 17  RHGKI--IYYFR----KGHGRR-IRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
           R+GK   +YY R    +G   R + L  P            +     ++E I +PR +  
Sbjct: 10  RNGKRARLYYGRYALNRGDKPRTVALGTPDVRVARKRLRDIIVEKQREQEGIIAPRTERD 69

Query: 70  T----LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
           T    L  L++E+               +     ++I+ ++G      I          +
Sbjct: 70  TAALPLTTLLTEFVADLQARKRTPRHIRTTRLCIEKILNETGWKRLSDIRADQFVKWRST 129

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK---RKTEGIRPWTKEDMQQF 182
            K    +  ++  S+ +   W VR + +A NP   V   +   +K    R +T E++ + 
Sbjct: 130 LKLAAKTVREYQASICIFLNWLVRLDRIARNPLAKVPHVETRGQKVRDTRAFTPEELARL 189

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI----FSIKTQKTG--TIITVE 236
                  S   L + FL Y+G+R  ++       L          ++ + T   T   + 
Sbjct: 190 FEVSGPRS---LLYRFLAYTGIRRGEAQALVWGDLHLTGEQPYLLVRDETTKDMTKRPLP 246

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--------AHG 288
           L      LL              D                   AG+ K          H 
Sbjct: 247 LHPRLAALLRAAAPQD----AKADAPVFPEFPHFRVLDRDIKAAGIPKRDGLNRTVAFHS 302

Query: 289 VRKFSATISADAGATAHELMATYGWKTVD-QAETYT 323
            RK   T+   AG          G    +  A+ YT
Sbjct: 303 FRKTFQTMGVRAGINQRAAQEFLGHSDANLTAKIYT 338


>gi|29347677|ref|NP_811180.1| integrase protein [Bacteroides thetaiotaomicron VPI-5482]
 gi|29339578|gb|AAO77374.1| integrase protein [Bacteroides thetaiotaomicron VPI-5482]
          Length = 396

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 55/290 (18%), Positives = 111/290 (38%), Gaps = 26/290 (8%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVESRKHTPSSAI 134
           +++     SL  ++R +  S  + +     D  +  +T        + ++S+ +  ++  
Sbjct: 112 FKEEVSNSSLKESTRQNHLSTLELLQEYKKDIVFTDLTFEFVSSFDNYLQSKGYHLNTIA 171

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP-WTKEDMQQFKSFWSEGSQPR 193
           + +  ++     A+ +EY+ I      +   +  EG     + E++ + +    EG   +
Sbjct: 172 KHMKHLKRYVNVAINKEYMDIQKYAFRKYKIKSIEGSHTHLSPEELNKMEEVNLEGKFTK 231

Query: 194 L-----AFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDGF--- 241
           L     AF F  Y+GLR SD       ++    Q      K+ KTG  + + L   F   
Sbjct: 232 LQKSKDAFLFCCYAGLRYSDFINLTAANIVELHQETWLIYKSVKTGIDVRLPLYLLFEGK 291

Query: 242 -MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISA 298
            +++L         FF   D   +N         A A  A ++K  S H  R  +AT+  
Sbjct: 292 GLRVLETYKDDLNGFFKLKDNSNVNKD-----LNALAKLAEIDKRISFHTARHTNATLLI 346

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
            +GA    +    G K+V   + Y    D     + +  + +    ++ P
Sbjct: 347 YSGANITTVQKLLGHKSVKTTQVYANIMDMT--IVHDLEKAAYSKLANRP 394


>gi|170761279|ref|YP_001786805.1| XerC/D integrase-recombinase protein [Clostridium botulinum A3 str.
           Loch Maree]
 gi|169408268|gb|ACA56679.1| XerC/D integrase-recombinase protein [Clostridium botulinum A3 str.
           Loch Maree]
          Length = 320

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 47/278 (16%), Positives = 94/278 (33%), Gaps = 34/278 (12%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESY--FDQIIRKSGDFDYRKITTKHIRS---GVE 124
           T++ +  +Y            +  S E +  ++ I   + D + +++T + I      + 
Sbjct: 16  TVEEIYEDYLNYCTSIGQREKTIESKEKFGKYELIKVVNLDSNIKQLTKEKIEKHIINMR 75

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
              +  ++   ++  MR    +     Y+       V+ P    E    +T+E++ +   
Sbjct: 76  KEGYKGNTYQTYVIKMRAFLSYCFNNNYLTK---FMVKIPNILLEKKEVYTEEEVIKLLK 132

Query: 185 FWSEGS------QPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVE 236
             +  +      +      FLL +G R        V+ +    N    +  KT   ITV 
Sbjct: 133 KPNINTCLVGDFRSWAICSFLLSTGCRAETLLNVHVEDVNFSTNSILFRHMKTKKQITVP 192

Query: 237 LPDGFMKLL-----AMTPIGKETFFINNDKQKMNATQ----FSIWFKAKATKAGVNKSAH 287
           L +     L      M    ++  F   + +KM           +FK +      N   H
Sbjct: 193 LSNTLKVNLMEYIQRMGLKQEDYLFPLLNGEKMKYDTCHQNLKNYFKHR------NVKFH 246

Query: 288 G---VRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           G    R   AT++   GA  + +    G   +   E Y
Sbjct: 247 GVNTFRNTFATMALKNGAGIYLIQKCLGHSDIKMTERY 284


>gi|163800577|ref|ZP_02194478.1| putative integrase [Vibrio sp. AND4]
 gi|159176020|gb|EDP60814.1| putative integrase [Vibrio sp. AND4]
          Length = 407

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 59/391 (15%), Positives = 109/391 (27%), Gaps = 74/391 (18%)

Query: 1   MTPS--LRLPPFVTKERTRHGKIIY--YFRKGHGRRIRLPYPHEST---FIPAYMSAL-- 51
           M PS  ++LP  V      HGK +   +  KG  RR  L          F       +  
Sbjct: 1   MAPSQNVKLPAGVEI----HGKSLRLDFVYKGKRRRETLGLSPTKQNVRFAAQKRETIMY 56

Query: 52  ---------TGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI 102
                        P   Y  + + +  T   ++ +Y +      L  ++   + S F   
Sbjct: 57  EIKIGIFRYAAHFPDSPY-ATEQSQSRTFGEMVDKYLQLKQ-ADLRSSTYKKYVSLFKIT 114

Query: 103 IRKSG---DFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL 159
               G           +      +  +     +   +  ++   F W  +  YV  N   
Sbjct: 115 KNAYGANRSCSTLSPESVSELRALLIKGRGARTLNTYFRAINTFFGWLHKMGYVDRNFSE 174

Query: 160 SVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ- 218
            +   K     I P+T +++ +      +    +     L Y+GLR  + C    + +  
Sbjct: 175 FMPSVKTPERNINPFTIDEINKALDACMQEQH-KNMITLLAYTGLRTGEICGLAWEDVDF 233

Query: 219 -NNIFSIKTQ----------KTGTIITVELPDGFMKLLAMT------------------- 248
            N + +I+            KT    TV+L    ++ L                      
Sbjct: 234 ENKVLTIRRATFESRGLKTPKTDRERTVDLMPPALEALQAQKKLSSHYPQKEHEVELADK 293

Query: 249 ------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS-AHGVRKFSAT 295
                       P   E           + T  +  ++    +AG+     + +R   A+
Sbjct: 294 TIRLDNIRFVFNPKATENLNAKTPYDYFSKTAPNKMWRNICIRAGIPYRNVYQLRHTYAS 353

Query: 296 ISAD-AGATAHELMATYGWKTVDQ-AETYTK 324
                A      L    G       A  Y K
Sbjct: 354 WMLSYANVNIAYLAQQMGHSNFLMIASVYGK 384


>gi|331672874|ref|ZP_08373660.1| integrase [Escherichia coli TA280]
 gi|331070095|gb|EGI41464.1| integrase [Escherichia coli TA280]
          Length = 411

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 44/314 (14%), Positives = 87/314 (27%), Gaps = 65/314 (20%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHIRSGVE---- 124
           T   L   + K      L  N+    +S    +            I    I +       
Sbjct: 82  TFGELCDIWTKIKE-TELTTNTMKKTKSQLKTLRIIICESTPISHIRYSDILNYRNELLH 140

Query: 125 ------------SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
                        +  T  +   ++  +  L ++A +  +++  P   V++ +R      
Sbjct: 141 GETLYLDNPRSNKKGRTVRTVDNYIALLCSLLRFAYQSGFISTKPFEGVKKLQRNRIKPD 200

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
           P +K +         +G    L  +F +YSGLR  +      + +      +  ++  TI
Sbjct: 201 PLSKTEFNALMES-EKGQSQNLW-KFAVYSGLRHGELAALAWEDVDLEKGIVNVRRNLTI 258

Query: 233 ITVELPDG----------FMKLLAMTP-----IGKE-----TFFINNDKQK--------- 263
           + +  P                L          G       TF+     +          
Sbjct: 259 LDMFGPPKTNAGIRTVTLLQPALEALKEQYKLTGHHRKSEITFYHREYGRTEKQKLHFVF 318

Query: 264 ------------MNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMA 309
                        + +     + A   +AG+ +    H  R   A     AGA    + +
Sbjct: 319 MPRVCNGKQKPYYSVSSLGARWNAAVKRAGIRRRNPYHT-RHTFACWLLTAGANPAFIAS 377

Query: 310 TYGWKTVDQA-ETY 322
             G +T     E Y
Sbjct: 378 QMGHETAQMVYEIY 391


>gi|260589353|ref|ZP_05855266.1| site-specific recombinase, phage integrase family [Blautia hansenii
           DSM 20583]
 gi|260540434|gb|EEX21003.1| site-specific recombinase, phage integrase family [Blautia hansenii
           DSM 20583]
          Length = 365

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 50/354 (14%), Positives = 118/354 (33%), Gaps = 50/354 (14%)

Query: 5   LRLPPFVTKERTRHGKII--YYFRKGHGRRIRLPYPHESTFIPAY----MSAL--TGSTP 56
           ++LP          GK    +  RK  G RI    P +   +  Y     +A    G   
Sbjct: 1   MKLPNGYGSVVKLSGKRRKPWMVRKTTGYRI---DPVKEKKVNEYIIIGYAATKTEGLQM 57

Query: 57  KREYINSP---RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK 113
             +Y  +P   +    T   +  E+ K   + +++ ++   +++ + +      +  ++ 
Sbjct: 58  LADYNRNPYDTKAAKMTFDEVYEEWSK-KKFPTVSESNIKGYKASY-KTCGILYNRVFKD 115

Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYV--------------AINPCL 159
           +    ++  +++      +  +       L+++A++ +                  NP  
Sbjct: 116 LKLADLQQVIDTCGKNYPTLKKIKILFNQLYEFALKNDICNKDYSTFVEISQYKDRNPNK 175

Query: 160 SVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HL 217
                  K E  + WT ++  ++                LLY+G R S+      +  HL
Sbjct: 176 HTRTKFTKEEVAKVWTMKE-DKYYQ----------IILMLLYNGTRISEFLDLKKENVHL 224

Query: 218 QNNIFSIKTQKTGTIIT-VELPDGFMKLLA---MTPIGKETFFINNDKQKM-NATQFSIW 272
           +   F +   KT   I  V + D  +        +    E      D ++      +  +
Sbjct: 225 EEQYFDVIDSKTENGIRKVPIADKLLPYYKDWYNSCPDCEYLLHTEDGKRFLYRNYYDSY 284

Query: 273 FKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVD--QAETYTK 324
           +     + G++++ H  R    ++ ++AG     +    G         + YT 
Sbjct: 285 WTPLVEQIGIDRTPHCTRHTCISMLSEAGVQDTTIKKIVGHSGAMTLTEKVYTH 338


>gi|15801240|ref|NP_287257.1| partial integrase for prophage CP-933N [Escherichia coli O157:H7
           EDL933]
 gi|15830755|ref|NP_309528.1| integrase [Escherichia coli O157:H7 str. Sakai]
 gi|168751327|ref|ZP_02776349.1| phage integrase family protein [Escherichia coli O157:H7 str.
           EC4113]
 gi|168764593|ref|ZP_02789600.1| phage integrase family protein [Escherichia coli O157:H7 str.
           EC4501]
 gi|168771349|ref|ZP_02796356.1| phage integrase family protein [Escherichia coli O157:H7 str.
           EC4486]
 gi|168783493|ref|ZP_02808500.1| phage integrase family protein [Escherichia coli O157:H7 str.
           EC4076]
 gi|168790101|ref|ZP_02815108.1| phage integrase family protein [Escherichia coli O157:H7 str.
           EC869]
 gi|195938882|ref|ZP_03084264.1| putative integrase [Escherichia coli O157:H7 str. EC4024]
 gi|208807171|ref|ZP_03249508.1| phage integrase family protein [Escherichia coli O157:H7 str.
           EC4206]
 gi|208816373|ref|ZP_03257552.1| phage integrase family protein [Escherichia coli O157:H7 str.
           EC4045]
 gi|208822521|ref|ZP_03262840.1| phage integrase family protein [Escherichia coli O157:H7 str.
           EC4042]
 gi|209398624|ref|YP_002269968.1| phage integrase family protein [Escherichia coli O157:H7 str.
           EC4115]
 gi|217328564|ref|ZP_03444646.1| phage integrase family protein [Escherichia coli O157:H7 str.
           TW14588]
 gi|254792506|ref|YP_003077343.1| integrase for prophage CP-933N [Escherichia coli O157:H7 str.
           TW14359]
 gi|261226973|ref|ZP_05941254.1| integrase for prophage CP-933N [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261256207|ref|ZP_05948740.1| integrase for prophage CP-933N [Escherichia coli O157:H7 str.
           FRIK966]
 gi|12514676|gb|AAG55869.1|AE005322_3 partial integrase for prophage CP-933N [Escherichia coli O157:H7
           str. EDL933]
 gi|13360965|dbj|BAB34924.1| putative integrase [Escherichia coli O157:H7 str. Sakai]
 gi|188014608|gb|EDU52730.1| phage integrase family protein [Escherichia coli O157:H7 str.
           EC4113]
 gi|188999133|gb|EDU68119.1| phage integrase family protein [Escherichia coli O157:H7 str.
           EC4076]
 gi|189359832|gb|EDU78251.1| phage integrase family protein [Escherichia coli O157:H7 str.
           EC4486]
 gi|189365428|gb|EDU83844.1| phage integrase family protein [Escherichia coli O157:H7 str.
           EC4501]
 gi|189370386|gb|EDU88802.1| phage integrase family protein [Escherichia coli O157:H7 str.
           EC869]
 gi|208726972|gb|EDZ76573.1| phage integrase family protein [Escherichia coli O157:H7 str.
           EC4206]
 gi|208733021|gb|EDZ81709.1| phage integrase family protein [Escherichia coli O157:H7 str.
           EC4045]
 gi|208738006|gb|EDZ85689.1| phage integrase family protein [Escherichia coli O157:H7 str.
           EC4042]
 gi|209160024|gb|ACI37457.1| phage integrase family protein [Escherichia coli O157:H7 str.
           EC4115]
 gi|217318991|gb|EEC27417.1| phage integrase family protein [Escherichia coli O157:H7 str.
           TW14588]
 gi|254591906|gb|ACT71267.1| integrase for prophage CP-933N [Escherichia coli O157:H7 str.
           TW14359]
 gi|326339346|gb|EGD63160.1| Phage integrase [Escherichia coli O157:H7 str. 1125]
          Length = 372

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 61/355 (17%), Positives = 112/355 (31%), Gaps = 42/355 (11%)

Query: 17  RHGKIIYYFRKG-HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT----- 70
           R G++ Y ++    G+   L          A  +    +  + EY      +  +     
Sbjct: 22  RTGRVYYQYKNPVTGKFHGLGTDKGKAEKIASTANQRIAAAEAEYFMRKIDESPSATKRR 81

Query: 71  ---LKWLISEYRKSAHWG----SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
              LK  +  Y K          +A  +          ++ + G+   +++  +     +
Sbjct: 82  GIRLKAWVDRYLKIQDTRLKNGDIAATTHKEKTRMAAYLVSRLGNHPLKELEVRDFALIL 141

Query: 124 ESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAI--NPCLSVERPKRKTEGIRPWTKEDM 179
           +    K   S+A         ++K A     V    NP  +  +P  K    R  T ED 
Sbjct: 142 DEWLDKDMVSTARVNRGLWVDIYKEAQHAGEVPPGWNPPEATRKPIPKVTRAR-LTMEDW 200

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239
           Q+  +   E    R A    + +G R  D C      + N    I   KTG  + + L  
Sbjct: 201 QKIYNATPEKHFIRNAMLLAIVTGQRRDDICHMRFSDVWNEHLHITQGKTGMRLALPLTL 260

Query: 240 G-------FMKLLA-MTPIGKETFFINNDK----QKMNATQFSIWFKAKATKAGV----- 282
                     +++          + I++      + M+    S +F      AGV     
Sbjct: 261 RCDAIGITLKEVIDGCRDRILSPYLIHSRHQKQPKPMSKDNLSDYFAKARDLAGVIPPAG 320

Query: 283 --NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY--TKGADRIRLGI 333
               + H  R  S  +    G     L    G K     + Y  T+G + ++L I
Sbjct: 321 KTPPTFHEQRSLSERLYRAQGIDTKTL---LGHKVQATTDRYNDTRGQEWVKLVI 372


>gi|312872314|ref|ZP_07732384.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LEAF 2062A-h1]
 gi|311092137|gb|EFQ50511.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LEAF 2062A-h1]
          Length = 372

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 58/348 (16%), Positives = 119/348 (34%), Gaps = 40/348 (11%)

Query: 13  KERTRHGKIIYYFRKG-----HGRRIRLPYPHESTFIPAYMSA--LTGSTPKREYINSPR 65
           +   ++G+  YYF+       +G+RI         F   Y  A  +     + +  N  +
Sbjct: 11  EYTLKNGQKRYYFKISLGENSNGKRI---VTTRRGF-KTYAEADQVYNQLSRVKADNFVK 66

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
           +   T+  L   + ++        ++      Y + I    G+    KIT   ++   + 
Sbjct: 67  QNQITIDELHKIWFENYKNAVKESSAISESGIYKNHIKPFFGNQFIDKITVVDLQKWADK 126

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-----PWTKEDMQ 180
           +     +  + +  M  LF++ +R  YV+ N    V  PK+     R      +T+++++
Sbjct: 127 KATELVAFRRVIAVMNGLFEYGMRLNYVSSNLVKRVLIPKKTARKRRDTEKNVYTRKELE 186

Query: 181 QFKSFWS-EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSI------------- 224
            F              F+ L  +GLR S+      Q +   NN+  +             
Sbjct: 187 TFLKVAKNFPIMKYTFFKILACTGLRRSECLALTWQDIDFKNNLLHVNKTLAYGLNHQVI 246

Query: 225 --KTQKTGTIITVELPDGFMKLL--AMTPIGKETFFINNDKQKMNATQFSIWFKAKATK- 279
               +   +   + +     K L         +  F   + + +     +IW K    K 
Sbjct: 247 VQTPKSKKSNRKIPISSSLRKALIEYQKQATHDKLFHTLNGKYLYLGTPNIWLKKIYDKN 306

Query: 280 AGVNK-SAHGVRKFSATIS-ADAGATAHELMATYGWKTVDQA-ETYTK 324
             + K + HG R   AT+  ++       +    G K ++     YT 
Sbjct: 307 PDLKKITVHGFRHTFATLLISETNVKPKTVQMILGHKNIEITLNLYTH 354


>gi|300362050|ref|ZP_07058227.1| tyrosine recombinase XerC [Lactobacillus gasseri JV-V03]
 gi|300354669|gb|EFJ70540.1| tyrosine recombinase XerC [Lactobacillus gasseri JV-V03]
          Length = 367

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 38/288 (13%), Positives = 96/288 (33%), Gaps = 28/288 (9%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKH 128
                 ++ K+   G++A N+ I +     +I    G    + I     +  +    + H
Sbjct: 62  FADYYDDWVKTYKKGNVAPNTLIEYNLEGKRIRTLLGAAKIKNINRSKYQKVINEFGKNH 121

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP--WTKEDMQQFKSFW 186
             ++  +   ++R   K A++   +  +   +++    K   ++      ++++   +  
Sbjct: 122 AKNTVKKLHRAIRTCVKSAIQDGIITRDFTENIQLAFNKDHDLKVDYLEYDEIKLLLNHL 181

Query: 187 SEGSQPRL----AFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ-----------KT 229
              + P           L +GLR S+      + L   +N   ++             K 
Sbjct: 182 YNAANPNFPGSYMILLGLTTGLRESEMAGLKWEDLDFEDNTIKVRRSWVYSQKEYGPTKN 241

Query: 230 GTII-TVELPDGFMKLLAMTPIGKE--TFFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284
            + +  + +PD  MK +    I      F+        N+   +   +    +  + +  
Sbjct: 242 ESSVRPIGVPDFIMKKIKELKINDPEKVFWSKARNGFPNSKSLNRTLRDNLAELKIKREG 301

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIR 330
              H +R     I   A  + +++    G  T     E Y +  ++ R
Sbjct: 302 YHIHSLRHSQVAILLSADVSTYDIAQRLGHATTKTTEEIYAETFEKHR 349


>gi|167749518|ref|ZP_02421645.1| hypothetical protein EUBSIR_00474 [Eubacterium siraeum DSM 15702]
 gi|167657546|gb|EDS01676.1| hypothetical protein EUBSIR_00474 [Eubacterium siraeum DSM 15702]
          Length = 392

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 49/316 (15%), Positives = 95/316 (30%), Gaps = 68/316 (21%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           T  +   ++ K      ++V    ++   F+ +     DF+  K+    I+  +      
Sbjct: 63  TFGYWGEKWLKLKK-IEVSVKRYEAYSKRFENL-EPIHDFNISKLKATDIQDIILDCADE 120

Query: 130 PSS------AIQFLTSMR----VLFKWAVRQEYVAINPCLSVERPKRKTEG-IRPWTKED 178
           PS       A Q L  +R     + + A+    +  N   +V+ PK   +   R  T+E+
Sbjct: 121 PSEKTGKPYAKQTLIEIRNVAKQIIQLAIENRVLDYNCASAVKIPKTAEKSTRRALTEEE 180

Query: 179 MQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII--- 233
                  W   +  R   A   ++Y+GLR  +      Q +  +  +IK +++ ++I   
Sbjct: 181 -----QSWITDTPHRAQTAAMIMMYAGLRRGELLALTWQDIDLDAHTIKVERSVSMIKGK 235

Query: 234 --------------TVELPDGFMKLLA-MTPIGKETFFINNDKQKMNATQFSIWFKAKAT 278
                         TV +P   +  L  +                M  T FS  + +   
Sbjct: 236 PHIKEGGKTDAATRTVYIPGKLVNYLRNIAHSPLGLVCPTVKGSLMTETGFSRMWASYLN 295

Query: 279 KAGVNK-----------------------------SAHGVRKFSATISADAGATAHELMA 309
              +                               + H +R    T+   AG        
Sbjct: 296 DLNIKYGDWADCMQTGGKCPSKYAPIEKPFLIPRITPHWLRHTFITLMYLAGVDVLTAKE 355

Query: 310 TYGWKTVDQA-ETYTK 324
             G   +      YT 
Sbjct: 356 QAGHADIKTTMAIYTH 371


>gi|46203230|ref|ZP_00051840.2| COG0582: Integrase [Magnetospirillum magnetotacticum MS-1]
          Length = 317

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 43/315 (13%), Positives = 104/315 (33%), Gaps = 28/315 (8%)

Query: 27  KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR-KKPTTLKWLISEYRKSAHWG 85
           +  G   R     + T    +   L     +  ++   +  + TTL  +++ YR+     
Sbjct: 3   RRKGTAPRSKSFDKKTDAEKWARDLEAEVDRCGFLPDTKLAEDTTLAEIMTRYRE----- 57

Query: 86  SLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTSM 140
            +    R +    F     +           +++  I +  + R     P++ ++ + ++
Sbjct: 58  EVTPRKRGAKIEVFRINAMLRHDIMHRTLALLSSSDIAAYRDERLQSVGPAAVVREIATI 117

Query: 141 RVLFKWAVR--QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP--RLAF 196
                 A++    Y+  NP   V RP       R    ++ ++  +    G     +   
Sbjct: 118 SQAIDTAMKDWNIYLVRNPAKLVRRPSLPRGRDRRLEGDEERRILAACDRGRIRWLKPMV 177

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELP----DGFMKLLAMTPI 250
              + + +R  +        +  +     +   K G+   V L     +    L+     
Sbjct: 178 VLAVETSMRRGEMLSLRWSDIDLDRRVAHLSMTKNGSSRDVPLSTRAVETLTGLMQQPDR 237

Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMA 309
             E  F+      ++     + +    T+ G++  + H +R    +   + G    E+ A
Sbjct: 238 DPEKVFM------VSENAVRLAWDRLRTRIGLDNINFHDLRHEGVSRLFEKGLDVMEVSA 291

Query: 310 TYGWKTVDQAETYTK 324
             G KT+   + YT 
Sbjct: 292 ISGHKTLTMLKRYTH 306


>gi|320198562|gb|EFW73162.1| Integrase [Escherichia coli EC4100B]
          Length = 436

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 40/332 (12%), Positives = 101/332 (30%), Gaps = 63/332 (18%)

Query: 48  MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG 107
            +A    +P  +     +K+  T+K L  ++        ++ N+   +ES    ++ K G
Sbjct: 62  YAAQFPDSPNLQAFGVSKKE-ITVKELEEKWL-DLKRMEISANAFNRYESVARTMVPKIG 119

Query: 108 DFDYRK---------ITTKHIRSGVESRKHTPS------SAIQFLTSMRVLFKWAVRQEY 152
                          I    +     S K+  +      +   ++T++  +F++A    Y
Sbjct: 120 GSRLVSSVTKEELLYIRKDLLTGYQNSMKNKAAKGRSVVTVNYYMTTIAGMFQFAADHGY 179

Query: 153 VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRA 212
           +  NP   ++  KR      P T+++  +         Q +  +   +Y+G+R  +    
Sbjct: 180 LEANPFQGIKPLKRARAEPDPLTRDEFIRLIDAC-RHQQTKNLWSLAVYTGMRHGELVSL 238

Query: 213 GVQHLQNNIFSIKTQKTGTII---------------------TVELPDGFMKLLAMTPIG 251
             + +     +I  ++  T +                      + +     ++  +    
Sbjct: 239 AWEDIDLKAGTITIRRNYTKLGEFTLPKTEASTNRVVHLIQPAISVLKNQAEMTRLGKQY 298

Query: 252 KETFFINNDKQK-----------------------MNATQFSIWFKAKATKAGV-NKSAH 287
                +    +                                 ++    +AG+ ++ A+
Sbjct: 299 NIKVQLREYGRSVNHECTFVFNPQVVRKSEQVGFVYKVDSVGDSWETAIKRAGIRHRKAY 358

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQA 319
             R   A  S  AGA    + +  G  +    
Sbjct: 359 QSRHTYACWSLSAGANPSFIASQMGHASAQMV 390


>gi|253773653|ref|YP_003036484.1| integrase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254161424|ref|YP_003044532.1| integrase [Escherichia coli B str. REL606]
 gi|297518916|ref|ZP_06937302.1| integrase [Escherichia coli OP50]
 gi|300926736|ref|ZP_07142511.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 182-1]
 gi|242377121|emb|CAQ31849.1| Rac prophage; predicted integrase [Escherichia coli BL21(DE3)]
 gi|253324697|gb|ACT29299.1| integrase family protein [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|253973325|gb|ACT38996.1| integrase [Escherichia coli B str. REL606]
 gi|253977538|gb|ACT43208.1| integrase [Escherichia coli BL21(DE3)]
 gi|300417312|gb|EFK00623.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 182-1]
          Length = 411

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 44/314 (14%), Positives = 87/314 (27%), Gaps = 65/314 (20%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHIRSGVE---- 124
           T   L   + K      L  N+    +S    +            I    I +       
Sbjct: 82  TFGELCDIWTKIKE-TELTTNTMKKTKSQLKTLRIIICESTPISHIRYSDILNYRNELLH 140

Query: 125 ------------SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
                        +  T  +   ++  +  L ++A +  +++  P   V++ +R      
Sbjct: 141 GETLYLDNPRSNKKGRTVRTVDNYIALLCSLLRFAYQSGFISTKPFEGVKKLQRNRIKPD 200

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
           P +K +         +G    L  +F +YSGLR  +      + +      +  ++  TI
Sbjct: 201 PLSKTEFNALMES-EKGQSQNLW-KFAVYSGLRHGELAALAWEDVDLEKGIVNVRRNLTI 258

Query: 233 ITVELPDG----------FMKLLAMTP-----IGKE-----TFFINNDKQK--------- 263
           + +  P                L          G       TF+     +          
Sbjct: 259 LDMFGPPKTNAGIRTVTLLQPALEALKEQYKLTGHHRKSEITFYHREYGRTEKQKLHFVF 318

Query: 264 ------------MNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMA 309
                        + +     + A   +AG+ +    H  R   A     AGA    + +
Sbjct: 319 MPRVCNGKQKPYYSVSSLGARWNAAVKRAGIRRRNPYHT-RHTFACWLLTAGANPAFIAS 377

Query: 310 TYGWKTVDQA-ETY 322
             G +T     E Y
Sbjct: 378 QMGHETAQMVYEIY 391


>gi|222151187|ref|YP_002560341.1| integrase [Macrococcus caseolyticus JCSC5402]
 gi|222120310|dbj|BAH17645.1| integrase [Macrococcus caseolyticus JCSC5402]
          Length = 384

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 54/358 (15%), Positives = 110/358 (30%), Gaps = 61/358 (17%)

Query: 20  KIIYYFRKGHGRRIRLPYPHESTFIPAYMSA--LTGSTPKREYINSPRKKPTTLKWLISE 77
           ++ YY   G  R I       S  +     A  L     +   +N  +    TLK  I E
Sbjct: 14  RVYYYDENGKRRTI-------SKNVKKERDAKKLARDLERDVELNKCKTDIPTLKSFIDE 66

Query: 78  YRKSAH-------------WGSLAVNSRISFE--SYFDQIIRKSGDFDYRKITT---KHI 119
           Y ++               W +  + S   +E     +++     +    K+T    + +
Sbjct: 67  YIETYRVGKVSQASIDIDKWSAKRLFSIRIYENKKLIEEVKLHDENIRIDKVTPTMQQKV 126

Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKED 178
            + +    ++ S+  +  + M    + A     +++NP   +E R   K +      K+ 
Sbjct: 127 INKLFEYNYSISTIKKTNSLMFRAMERAKFDGLISVNPAEYIEFRITDKVKKAEYIPKDL 186

Query: 179 MQQFKSFWSE-GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT----------- 226
           ++ F +            F  ++ +GLR  ++C   +     N   I             
Sbjct: 187 IKPFLTDVKRRNIYHYYLFRLIIETGLRVGEACALKLSDFDKNNLYITVDSSYDQKRDVL 246

Query: 227 --QKTGTIITVELPDGFMKLLAMTPIGKET---------------FFINNDKQKMNATQF 269
              KT     V +       +       ET                F+N   + ++ +  
Sbjct: 247 GNTKTKHHRKVYITRELYDEMLNLTKLHETNKIIIGSEYSNEYNFLFVNEFGKPLSRSSI 306

Query: 270 SIWFKAKA--TKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTK 324
                        G   S H +R   AT+  +A      +    G ++++  E  Y  
Sbjct: 307 HNTM-IYCSKKILGQQISVHKLRHTHATLLLEANVPMKVIQERLGHQSMEMTERIYAH 363


>gi|330448288|ref|ZP_08311936.1| phage integrase family protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328492479|dbj|GAA06433.1| phage integrase family protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 480

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 39/278 (14%), Positives = 87/278 (31%), Gaps = 50/278 (17%)

Query: 83  HWGSL--AVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
            W +L  A   + + +S+  D+I    GD               + + + P++A   L  
Sbjct: 210 DWITLLYAPVLQSTMQSFLTDRIENTFGD---------------QKKSYAPATADNLLRM 254

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGI----RPWTKEDMQQFKSFW------SEG 189
           +R + + A   E +++     ++  K          R  + +++    +        ++ 
Sbjct: 255 LRGVAQHAWLAELISVETLERIKAIKLPRGSRQSSGRYLSYQELDHISALTLEQKNKAKA 314

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVE----------LP 238
            +    F  +  +GLR ++     +  +  +   ++    G     V           + 
Sbjct: 315 LRDNAIFWLMYEAGLRRAEVVSLNIYDIDMDRCQLRVVGKGNKERYVPFSINSDLYSTMQ 374

Query: 239 DGFMKLLAMTPIGKETFFIN-NDKQKMNATQFSIW-FKAKATKAGVNK-------SAHGV 289
                    + + K   F   N  Q +   + +           G+NK       S H  
Sbjct: 375 QWLAVRQQNSLMDKPALFCTINRYQALTHQRLTTQTLNDLCK--GLNKKGFNRVVSPHDF 432

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           R   AT    AG     +    G  ++   + Y +  D
Sbjct: 433 RHSVATNLLRAGFDLLLVSKFMGHSSITTTQRYDRRTD 470


>gi|311111413|ref|ZP_07712810.1| phage integrase [Lactobacillus gasseri MV-22]
 gi|311111462|ref|ZP_07712859.1| phage integrase [Lactobacillus gasseri MV-22]
 gi|311066567|gb|EFQ46907.1| phage integrase [Lactobacillus gasseri MV-22]
 gi|311066616|gb|EFQ46956.1| phage integrase [Lactobacillus gasseri MV-22]
          Length = 367

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 39/288 (13%), Positives = 96/288 (33%), Gaps = 28/288 (9%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-KHT 129
                 ++ K+   G++A N+ I +     +I    G    + I     +  +    K  
Sbjct: 62  FANYYDDWVKTYKKGNVAPNTLIEYNLEGKRIRTLLGATKIKNINRSKYQKVINEFGKDH 121

Query: 130 PSSAIQFL-TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP--WTKEDMQQFKSFW 186
             + ++ L  ++R   K A++   +  +   +++    K   ++      ++++   +  
Sbjct: 122 AKNTVKKLHRAIRTCVKSAIQDGIITRDFTENIQLAFNKDHDLKVDYLEYDEIKLLLNHL 181

Query: 187 SEGSQPRL----AFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ-----------KT 229
              + P           L +GLR S+      + L   +N   ++             K 
Sbjct: 182 YNAANPNFPGSYMILLGLTTGLRESEMAGLKWEDLDFEDNTIKVRRSWVYSQKEYGPTKN 241

Query: 230 GTII-TVELPDGFMKLLAMTPIGKE--TFFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284
            + +  + +PD  MK +    I      F+        N+   +   +    +  + +  
Sbjct: 242 ESSVRPIGVPDFIMKKIKELKINDPEKVFWSKARNGFPNSKSLNRTLRDNLAELKIKREG 301

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIR 330
              H +R     I   A  + +++    G  T     E Y +  ++ R
Sbjct: 302 YHIHSLRHSQVAILLSADVSTYDIAQRLGHATTKTTEEIYAETFEKHR 349


>gi|237716535|ref|ZP_04547016.1| integrase [Bacteroides sp. D1]
 gi|262405314|ref|ZP_06081864.1| integrase [Bacteroides sp. 2_1_22]
 gi|294644635|ref|ZP_06722388.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294810164|ref|ZP_06768832.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
 gi|229442518|gb|EEO48309.1| integrase [Bacteroides sp. D1]
 gi|262356189|gb|EEZ05279.1| integrase [Bacteroides sp. 2_1_22]
 gi|292640072|gb|EFF58337.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294442628|gb|EFG11427.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
          Length = 406

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 50/288 (17%), Positives = 90/288 (31%), Gaps = 33/288 (11%)

Query: 68  PTTL----KWLISEYRKSAHWGSLAVNSRIS--FESYFDQIIRKSGDF--DYRKITTKHI 119
           PTTL    +W     +K +       + R S  ++ Y    I   G       ++T    
Sbjct: 101 PTTLLQMGEWERERLKKHSEEIDSTSSYRHSMYYQKYLTDFIASIGKKEIPLEEVTEDFG 160

Query: 120 RSGVESRKH----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
           +S     K     + S   + +  +  L   AV +E + +NPC  +E   +     R  +
Sbjct: 161 KSYKAFLKKCKNFSSSQTNKCMCWLNRLLYLAVDKEIIRVNPCEDLEYEPKPEARHRYIS 220

Query: 176 KEDMQQFKS---FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-----FSIKTQ 227
           +++ ++  S   +       R AF F   +GL   D       H+  N        I  +
Sbjct: 221 RDEFKKILSTPMYDKRMELARRAFIFSTLTGLAYVDIKLLHPHHIGTNAEGRRYIRINRK 280

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK----MNATQFSIWFKAKATKAG-- 281
           KT     + L     ++L         +   +D++      +               G  
Sbjct: 281 KTKVEAFIPLHPIAEQIL-------SLYNTTDDEKPVFPLPSRDSLWFDIHEMGVAIGKE 333

Query: 282 VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            N S H  R    T    A      +    G   +   + Y +  D  
Sbjct: 334 ENLSYHQSRHSFGTFLISADIPIESIAKMMGHSNIRTTQGYARITDDK 381


>gi|225028632|ref|ZP_03717824.1| hypothetical protein EUBHAL_02911 [Eubacterium hallii DSM 3353]
 gi|224954042|gb|EEG35251.1| hypothetical protein EUBHAL_02911 [Eubacterium hallii DSM 3353]
          Length = 359

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 82/278 (29%), Gaps = 42/278 (15%)

Query: 87  LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKW 146
           L   +    E Y D +     D +       H        + T         S+R  +K+
Sbjct: 88  LDKVTLTQLEEYLDYLR-LYEDAE----NKVHTNEERGRMRKTA--------SIRTFYKF 134

Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS---------------Q 191
             R++ +  N    +  PK+    I     +++ +      EG                +
Sbjct: 135 FYRKQVIKNNTASLLNLPKKHEHTIVRLEIDEIAKLLDAVEEGDNLTKSQKKYHNKTKIR 194

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKT-------GTIITVELPDGFM 242
                  LL +G+R S+     + +L    N   I  +         G  +   L D   
Sbjct: 195 DLAILTLLLGTGIRVSECVGIDISNLDFETNGMKIHRKGGADVILYFGEEVREALLDYLE 254

Query: 243 KLLAMTPIGKE--TFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISA 298
           +   + P        F++  K++++        K  A      K+   H +R    T   
Sbjct: 255 EREKIIPKEGSENALFLSMQKRRISVRAVENLVKKYARPVTPLKTITPHKLRSTYGTQLY 314

Query: 299 DAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKN 335
                 + +    G K V+   + Y    D+ R     
Sbjct: 315 QETGDIYLVADVLGHKDVNTTRKHYAAMEDQRRRMAAG 352


>gi|297618820|ref|YP_003706925.1| integrase family protein [Methanococcus voltae A3]
 gi|297377797|gb|ADI35952.1| integrase family protein [Methanococcus voltae A3]
          Length = 295

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 41/266 (15%), Positives = 93/266 (34%), Gaps = 21/266 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH---IRSGVESRKHTP---SSAIQFLT 138
            + + ++  S+ +  +  +    +  +  IT        +   S    P   S+ I+ LT
Sbjct: 17  SARSKDTLKSYRASLNIFMNFFQEKSWETITIDDALFFYNNYRSHNGKPIQISTTIRRLT 76

Query: 139 SMRVLFKWAVRQEYVAINPCLS-VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE 197
            +   ++WA+  +Y+  NP    V   + + +  +  +K   +   S   +     +   
Sbjct: 77  DVNRFYEWAIENKYLINNPLKLYVRTLRPQLKERQCLSKNQAKLLLSKIEDY-HYYIFTL 135

Query: 198 FLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFM-------KLLAMT 248
           FL+ +G+R S+     +  +   +    IK+ K      V + D  +       K     
Sbjct: 136 FLIKTGVRISEFINISLNDMDLSDRSIIIKSGKGNKDRYVFIDDELLLHIKQYLKYREFL 195

Query: 249 PIGKETFFINNDKQKMNATQFSIWFK----AKATKAGVNKSAHGVRKFSATISADAGATA 304
               +  F+     K++  Q S + +           +  + H +R    T++ ++    
Sbjct: 196 NPKIDRLFLTKGGYKLSEGQISDYRRYLRTISKDILNIIVTPHVLRHTFGTLACESNMNI 255

Query: 305 HELMATYGWKTVDQAETYTKGADRIR 330
             L    G   V+   TY   +   R
Sbjct: 256 EILSKIMGHANVNTTMTYIHSSKEFR 281


>gi|299066665|emb|CBJ37858.1| putative integrase/recombinase protein [Ralstonia solanacearum
           CMR15]
          Length = 334

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 51/300 (17%), Positives = 97/300 (32%), Gaps = 41/300 (13%)

Query: 50  ALTGSTPKREYINSPRKKPTTLKWLISEYRKS-------AHWGSLAV---NSRISFESYF 99
           A+      R        K  T+  ++ EY+KS       A W  L +     +      F
Sbjct: 36  AVRREAELRSIQGGQGSKTHTVGDVLDEYQKSVSPTKRGARWEILRLDLIGRKKIEGKLF 95

Query: 100 DQIIRKSGDFDYRKITTKHIRSGVESRKH--TPSSAIQFLTSMRVLFKWA-VRQEYVAIN 156
            +I           +  +HI +  + R      SS  + ++ +    + A     ++  +
Sbjct: 96  REIR-------LADLKPQHIAAWRDVRAREVAGSSVSREMSLLSHALEVARKEWGWLVTD 148

Query: 157 PCLSVERPKRKTEGIRPWTKEDMQQ--FKSFWSEGSQPRLA-------FEFLLYSGLRCS 207
           P   V RP       R  +  ++++      + EG+   L        F   + + +R  
Sbjct: 149 PMKDVRRPPDNPPRQRLVSDAEIERITLALGYQEGTPVALPSQRIAVSFLLAIETAMRSG 208

Query: 208 DSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI--GKETFFINNDKQK 263
           +              +  +   K G    V L    ++LL M P     +  F       
Sbjct: 209 EILGLTSTTVDYNRRVAHLPLTKNGGARDVPLSTRAVELLRMLPAVEAGDPLF------G 262

Query: 264 MNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           ++A      F+    KAG+ + + H  R  + T  A       +L    G   + +  TY
Sbjct: 263 LSAASRDALFRKAKEKAGIADLTFHDTRHEAITRLAKK-LQPLDLARMTGHTNLQELMTY 321


>gi|294634567|ref|ZP_06713102.1| site-specific recombinase, phage integrase family [Edwardsiella
           tarda ATCC 23685]
 gi|291092081|gb|EFE24642.1| site-specific recombinase, phage integrase family [Edwardsiella
           tarda ATCC 23685]
          Length = 345

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 45/280 (16%), Positives = 81/280 (28%), Gaps = 35/280 (12%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
           K   TL  L+  + +  H  +L    +   +S         G     + + +   +    
Sbjct: 60  KDTRTLSDLVHLWFE-RHGITLRDGEKR--KSAMLWAAECMGSPLATEFSAQLFTAYRAK 116

Query: 126 RKH------------TPSSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIR 172
           R              +P +           F    R   + A NP  +V + +     + 
Sbjct: 117 RLDGKFARTQRVAVVSPRTMNLEHAYFLAAFNELKRLGEWSAPNPLENVRQFRVDESEMA 176

Query: 173 PWTKEDMQQ--FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
             T E + Q  ++   S  S      +  L +G R S++       +     +    K  
Sbjct: 177 YLTIEQIDQLLYECRNSSASDLETIVKICLATGARWSEAENLRRSQISAGKVTFIKTKGK 236

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA---- 286
              T+ L    +KL+   P      F          T     F+    +AG++  A    
Sbjct: 237 RNRTIPLD---LKLIGELPKKNGALF----------TPCYYAFRNALERAGIDLPAGQLT 283

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           H +R   A+     G     L    G   +     Y   A
Sbjct: 284 HVLRHTFASHFMMNGGNILVLQKILGHTDIKMTMRYAHFA 323


>gi|290510860|ref|ZP_06550230.1| prophage lambda integrase [Klebsiella sp. 1_1_55]
 gi|289777576|gb|EFD85574.1| prophage lambda integrase [Klebsiella sp. 1_1_55]
          Length = 380

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 59/359 (16%), Positives = 114/359 (31%), Gaps = 52/359 (14%)

Query: 9   PFVTKERT-RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTP----------K 57
           P +  +   R GK+ + ++     R       E+        A T              +
Sbjct: 13  PNLYCKLDKRTGKVYWQYKHPISGRFHSLGTDEAEAKQVASEANTIIAEQRTRQILGINE 72

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHWG----SLAVNSRISFESYFDQIIRKSGDFDYRK 113
           R       +   T+   + +Y            L  NS               G    + 
Sbjct: 73  RLARMKGNRTDITVSSWLDKYELVQEERLKHNELRPNSFRQKAKPIRLFREHCGMQYLKD 132

Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMRVL----FKWAVRQEYVAI--NPCLSVERPKRK 167
           IT   I    ++ K       +    +R++    FK A    +V    NP  + ++P+ K
Sbjct: 133 ITALDISEITDAVKAEGH--NRMAQVVRMVLIDVFKEAQHAGHVPPGYNPAQATKQPRNK 190

Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSIK 225
               +  + E+ +   +   +  QP L    LL   +G R  D C      + +++  I+
Sbjct: 191 -ISRQRLSLEEWEAIYTSAEQ-QQPYLQCGMLLAIVTGQRLGDICNMKFSDVWDDMLHIE 248

Query: 226 TQKTGTIITVEL---PDGFMKLLAMTPIGKETFFINN-------------DKQKMNATQF 269
            +KTGT + + L    +     L+          ++                 +++A   
Sbjct: 249 QEKTGTRLAIPLSLRNEALNITLSDVISKCRDAVVSKYLVHFRHSTSQASRGDQVSAKTL 308

Query: 270 SIWFKAKATKAGVNK------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           +  FK    K+G+        + H  R  S  +  + G    +L    G KT+   + Y
Sbjct: 309 TSTFKKARDKSGLTWEEGTAPTFHEQRSLSERLYREQGIDTQKL---LGHKTMKMTDRY 364


>gi|260641922|ref|ZP_05413998.2| integrase [Bacteroides finegoldii DSM 17565]
 gi|260624125|gb|EEX46996.1| integrase [Bacteroides finegoldii DSM 17565]
          Length = 436

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 40/282 (14%), Positives = 93/282 (32%), Gaps = 28/282 (9%)

Query: 86  SLAVNSRISF---ESYFDQIIR---KSGDFDYRKITTKHIRSGVE----SRKHTPSSAIQ 135
             A  +  ++        + I+   K  D  + ++  + IR   +     + H   +   
Sbjct: 155 DRAPTTLSTYLFTYRTLSEFIKAKFKVSDLAFGQLNEQFIRDYQDFILMEKGHAVDTLRG 214

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP--- 192
           +L  ++ + + A ++ +         + PK+K    +  ++E+ ++ +       +    
Sbjct: 215 YLAILKKICRIAYKEGHSEKYHFCHFKLPKQKESTPKALSRENFEKLRDLEIPEKRRSHV 274

Query: 193 --RLAFEFLLYSGLRCSDSCRAGVQHL-----QNNIFSIKTQKTGTIITVELPDGFMKLL 245
             R  F F  Y+G   +D      ++L      N     + +KT  +  V+L    + L+
Sbjct: 275 ITRDLFLFACYTGTAYADVVSITRENLFTDEENNLWLKYRRKKTNYLGRVKLLPEALVLI 334

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATIS-ADAGA 302
                              +        K+    AG+++    H  R   A++   + G 
Sbjct: 335 EKYRDDARMTLF----PPQDYHTLRANMKSLRLMAGLSQDLVYHTARHSFASLITLEEGV 390

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
               +    G   +   + Y +     RL     R I +  D
Sbjct: 391 PIETISKMLGHSNIKTTQIYAR-VTPKRLFEDMDRFIEATRD 431


>gi|194466442|ref|ZP_03072429.1| integrase family protein [Lactobacillus reuteri 100-23]
 gi|194453478|gb|EDX42375.1| integrase family protein [Lactobacillus reuteri 100-23]
          Length = 328

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 48/327 (14%), Positives = 112/327 (34%), Gaps = 45/327 (13%)

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
           +   +K+         E+ ++  +G +   +   +     QI + + D    KIT   I+
Sbjct: 2   VQVGKKRAIKFWKYYKEWYETYKYGDVRDVTYQRYILTGKQIKKLAPDLMLDKITRADIQ 61

Query: 121 SGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPC--LSVERPKRKTEGIRPWTK 176
             + +   T    +   F   +    + AV + +++ +PC  + +    +K + ++ W +
Sbjct: 62  KLINAYGQTHEKVTVRNFYRLLEAPIRDAVYEGWISRDPCYKIRITSQVKKKKKLKKWLE 121

Query: 177 -EDMQQFKSFWSEGSQPRLAF-EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT----- 229
            +++ + +  ++        F +F L +GLR ++        +  N  SI   KT     
Sbjct: 122 MDEVHKLEQVFNADQSGYGDFFDFTLRTGLRFAEVLGLTPADVDMNNMSIYVNKTLNYKK 181

Query: 230 ---------------------GTIITVELPDGFMKLLAMTPIG---------KETFFINN 259
                                  +I  +      + L                ++     
Sbjct: 182 IDYSQVKPGDFMPTKNKYSVRQILIDFKALTDLQRHLDGVKEDESIWAHWYASDSRTNTR 241

Query: 260 DKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
               +  + F+   K    +AGV   S HG+R   A++      +   +    G    + 
Sbjct: 242 GGNHIYNSVFNKELKEMCDQAGVPPISVHGLRHTHASLLIANRVSIQSVAKRLGHGNTET 301

Query: 319 AET-YTKGADRIRLGIKNSRRISSVVD 344
            +  Y    D  +L  +++ +I SV+ 
Sbjct: 302 TQRVYIHLLD--KLANEDNNKIMSVMT 326


>gi|148544814|ref|YP_001272184.1| phage integrase family protein [Lactobacillus reuteri DSM 20016]
 gi|148531848|gb|ABQ83847.1| phage integrase family protein [Lactobacillus reuteri DSM 20016]
          Length = 402

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 60/359 (16%), Positives = 114/359 (31%), Gaps = 48/359 (13%)

Query: 9   PFVTKERTRHGKIIYYFRKGH----GRRIRLPYPHEST---FI---PAYMSALTGSTPKR 58
            +        G   Y    GH    G+RI+     ++    F     AY   L     K 
Sbjct: 5   KYPDVYVDNKGHYYYLVELGHDLLTGKRIQKKSRRDANNNRFRSAHDAYKECL---RIKN 61

Query: 59  EYINSPRKKPTTL--KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT 116
           EY +        L     +  Y   ++   +  ++  S +S F  +I   G +  R I +
Sbjct: 62  EYQSQNGYANYGLLYGDFMENYYIPSYKSDVEHSTFKSRQSIFKHLINWFGQYKLRSIRS 121

Query: 117 KHIRSGV----ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
                          ++   +       R    +AVR +++  NP    +   +    + 
Sbjct: 122 IDCEKFRVYLLNKSGYSQGFSSMVYGLFRNTLDYAVRMDFLTKNPSRKTKAINKGKSNVE 181

Query: 173 PWTKEDMQQFKSF-WSEGSQPRLAFEFLLY---SGLRCSDSCRAGVQHLQNNIFSIKTQK 228
            WTK + ++  S  +++     + F  L      G+R S+        +      ++  K
Sbjct: 182 FWTKSEFEKVLSVIYTKDYYQHMCFTILYLYFTCGMRVSEGLALTYDDVDYKRHRLRINK 241

Query: 229 T------------------GTIITVELPDGFMKLLAMTPIGKE-----TFFINNDKQKMN 265
           T                    I T+ L +  +++L      ++      F ++ D   M+
Sbjct: 242 TLDMTNKEHYTIKPYTKTINGIRTISLDNDTIRVLKSWQKDQQAHGVYHFIMSYDDTPMS 301

Query: 266 ATQFSIWFKAKATKAGVN-KSAHGVRKFSATISA-DAGATAHELMATYGWKTVDQAETY 322
            T   +  K  A  AGV    A G+R  + +    +  A    +    G    D    Y
Sbjct: 302 RTTIPLIIKRFAKIAGVKPIQAKGLRHSNVSYLINEFNADVLTVSRRLGHSGPDITLKY 360


>gi|295107834|emb|CBL21787.1| Site-specific recombinase XerD [Ruminococcus obeum A2-162]
          Length = 363

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 48/293 (16%), Positives = 92/293 (31%), Gaps = 49/293 (16%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR-- 126
           + +     Y +      L  N+ ++ E     +I+   G     +I+TK + +       
Sbjct: 57  SFEAFTELYIRDMK-SRLKENTWLTKEHIIRTKILPYFGKLKISEISTKEVIAWQNEMLA 115

Query: 127 ----KHTPSSAIQFLTS---MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR---PWTK 176
               K  P S     T    +  +F  AVR   +  NP    +     +E  +    WTK
Sbjct: 116 YRDEKKKPYSQTYLKTLHNQLSAIFNHAVRYYELRSNPAA--KAGNMGSEEHKEMLFWTK 173

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-----------------N 219
           E+ ++F     +      AFE L + G+R  +                            
Sbjct: 174 EEYKKFSFEMMDKPVSFYAFEMLYWCGIREGELLALTAADFDFEKETVRINKSYQRLHGE 233

Query: 220 NIFSIKTQKTGTIITVELPDGFMK-------LLAMTPIGKETFFINNDKQKMNATQFSIW 272
           ++ +    K    I +++P    +       +L         F +         +     
Sbjct: 234 DVITTPKTKKSNRI-IKMPKFLCEEMQEYLQMLYGLKKKDRIFTVTK-------SYLHHE 285

Query: 273 FKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
               A  AGV +   H +R    ++  D G +A  +    G +++D    Y  
Sbjct: 286 MDRGAKAAGVKRIRIHDLRHSHISLLIDMGFSAVAIADRVGHESIDITYQYAH 338


>gi|271967898|ref|YP_003342094.1| phage integrase family site specific recombinase [Streptosporangium
           roseum DSM 43021]
 gi|270511073|gb|ACZ89351.1| phage integrase family site specific recombinase [Streptosporangium
           roseum DSM 43021]
          Length = 257

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 52/245 (21%), Positives = 95/245 (38%), Gaps = 17/245 (6%)

Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
           I T   R+G+      P+ A      +  L+ +A R+  +A+NP  SVERPK  T G  P
Sbjct: 13  IGTGSARAGLGRPGVAPAPA-TVARRLSSLYGYATRRRLIAVNPADSVERPKVSTVGTTP 71

Query: 174 -WTKEDMQQF----KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--- 225
             T E+        ++  +       A   L    +R  +     V  +  +   +    
Sbjct: 72  ARTVEEATALVDGAETISAAYPADAAAVALLSVCAVRVGELVALTVGSVAADAGHMVILF 131

Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGK---ETFFINNDKQKMNATQFSIWFKAKATKAGV 282
            +K G    + +P     LL      +   E  F+    +  +  + +   +  AT  GV
Sbjct: 132 RRKGGKTDRMPIPPRVRALLEPLLADRSPGEPLFVREADRPFDRWRMTTALRRAATAPGV 191

Query: 283 NKS---AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
           + +    H  R  +AT + DAG    ++    G  +    + Y +G  R +L    + R+
Sbjct: 192 DHTKLTPHTARATAATAALDAGVPLADVQELLGHASPVTTQRYNRG--RRKLDSHAAYRM 249

Query: 340 SSVVD 344
           +S++ 
Sbjct: 250 ASILG 254


>gi|116621892|ref|YP_824048.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116225054|gb|ABJ83763.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 246

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 36/228 (15%), Positives = 78/228 (34%), Gaps = 22/228 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG----VESRKHTPSSAIQFLTSM 140
            + A ++   +                 K+  +H+R       +++K   S+  Q+   +
Sbjct: 15  RNYAQSTVKGYLRIVQDFAEHF-HQQPDKLGPEHLRQYQAHLFQNKKLNASTVQQYAAVL 73

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200
           R  F   +++ Y+  +    +  PKR  +     + +++       S           L 
Sbjct: 74  RFFFNKTLKRHYLLDD----IPMPKRHRKLPEILSPDEVALLIGSASNLLHQ-TMLMTLY 128

Query: 201 YSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFMKLLA---MTPIGKETF 255
            +G+R ++ CR     + +      I+  K G    V L    ++ L         K   
Sbjct: 129 STGVRRAELCRLKSADIDSQRMMVHIRQGKGGHDRDVPLSPRLLETLRVYWRWMKPKTYL 188

Query: 256 F---INNDKQ--KMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATI 296
           F   +NN +    +         +  A +AG+ K  S H +R ++   
Sbjct: 189 FPGTVNNWRADVPITTKVPWEACRQAAQRAGITKHVSPHTLRHYAGFR 236


>gi|303243822|ref|ZP_07330162.1| integrase family protein [Methanothermococcus okinawensis IH1]
 gi|302485758|gb|EFL48682.1| integrase family protein [Methanothermococcus okinawensis IH1]
          Length = 325

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 41/322 (12%), Positives = 112/322 (34%), Gaps = 49/322 (15%)

Query: 57  KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNS-RISFESY---FDQIIRKSGDFDYR 112
           K +   + R  P  +K  +  +R+   +  +  ++ R          D +  +      +
Sbjct: 13  KPQRKENVRDDPR-IKQWVERFREEREFDGIKPSTIRNDILRITIFLDFVYNRLNKEPDK 71

Query: 113 KITTKHIR--SGVES-RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
            + +  +R  + +E  RK + ++  ++   ++V ++ A  Q +          +   ++ 
Sbjct: 72  LVNSDFVRFFNYLERERKLSRNTQDKYFQLLKVFYRLARLQNF---------RKFAEESS 122

Query: 170 GIRPWTKEDMQQFKSFW--------------SEGSQPRLAFEF-LLY-SGLRCSDSCRAG 213
             + + + +++ + +                +  +  R +    +L+ +G R S+     
Sbjct: 123 ERKRFRRYEVKHYDAVDGGILNEILQKILSSNSRTNIRNSLIIRMLWDTGCRVSELLNIR 182

Query: 214 VQH--LQNNIFSIKTQKTGTIITVELPDGFMKLLA------MTPIGKETFFINNDKQKMN 265
            +    +   F I+  K      V   +  ++ L       +        F   D +++N
Sbjct: 183 YKDCDFEEGTFRIRNTKGKEERIVVCSNDTLEALRYYIQYNIDKSPDAPIFQTVDGKQIN 242

Query: 266 ATQ----FSIWFKAKATKAGVNKS----AHGVRKFSATISADAGATAHELMATYGWKTVD 317
                  FS   K    +  + ++     H +R   A    + G     +    G K++D
Sbjct: 243 RNTITHVFSNVIKELKKEGKIPQNKRIVLHSLRHGRAVDLLNKGVPLDVVKEVLGHKSID 302

Query: 318 QAETYTKGADRIRLGIKNSRRI 339
               Y+   DR    +K+ +++
Sbjct: 303 TTLFYSHSNDRANSMLKDIKKL 324


>gi|167761989|ref|ZP_02434116.1| hypothetical protein BACSTE_00335 [Bacteroides stercoris ATCC
           43183]
 gi|167700081|gb|EDS16660.1| hypothetical protein BACSTE_00335 [Bacteroides stercoris ATCC
           43183]
          Length = 421

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 42/269 (15%), Positives = 94/269 (34%), Gaps = 43/269 (15%)

Query: 90  NSRISFESYFDQIIRKSGDFDYRKITTK-------HIRSGVESRKHTPSSAIQFLTSMRV 142
            ++  +   +  I         R               + ++    + ++      S++ 
Sbjct: 138 KTKREYARTYYYIQEYEKKRKIRLEFRSINQSFFSDFVAFLQELGLSTNTIWHKTVSLKA 197

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEF 198
           + K A  QE          +    +++     +++++    SF    S    + R  F  
Sbjct: 198 VMKAANEQELTDNTKYQLFKNVSEESQA-VALSEDELDTLASFDFSHSPRLERTRDLFLV 256

Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFIN 258
             ++GLR SD  R   +++++ + +I+ QKT   +T+ L   F+++           +  
Sbjct: 257 GCWTGLRFSDFTRIREENIKDGMITIQQQKTNEFVTIPLHPVFLRIWEK--------YNG 308

Query: 259 NDKQKMNATQFSIWFKAKATKAGVNK-----------------------SAHGVRKFSAT 295
           N    ++  +F+   K    +AG+ +                       S+H  R+  AT
Sbjct: 309 NLPGNISNQKFNDNLKDVCREAGLTEHVMKSITKGGKKQTTIYEKWQLVSSHTARRSFAT 368

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTK 324
               +G  +  +M   G KT +    Y K
Sbjct: 369 NLYKSGFPSISIMQITGHKTENSFLKYIK 397


>gi|37678461|ref|NP_933070.1| phage integrase family site specific recombinase [Vibrio vulnificus
           YJ016]
 gi|37197201|dbj|BAC93041.1| site-specific recombinase, phage integrase family [Vibrio
           vulnificus YJ016]
          Length = 434

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 64/378 (16%), Positives = 126/378 (33%), Gaps = 43/378 (11%)

Query: 8   PPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMS--ALTGSTPKREYINSPR 65
           P ++ +  T  G+     R+    +  L    ++    AY       G  P  E      
Sbjct: 54  PYWMIRYTTAKGR-----REATLGQFPLMSLADARIAAAYFRKEVRDGIDPLLEKQKIEL 108

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
               T+  L  ++ ++     L    +I +  Y   I    G     ++T + +R  +E 
Sbjct: 109 PDIETVDQLFHDWYRTDLSRRLKHP-KIPYRVYTKDISPVIGIKCIAEVTARDVREVLER 167

Query: 126 RKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV---ERPKRKTEGIRPWTKEDMQ 180
            +    P+ A   L  M+ LF+ A++ +    NP  +    +    ++   R  +KE++ 
Sbjct: 168 IRESNRPTIANDTLMYMKQLFRHAIKLDLTLNNPAAAFTVDDAGGVESSKDRMLSKEEIH 227

Query: 181 -QFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI----KTQKTGT 231
             F  F +     G    LA    L  G+R S+ C A  + +           +  KTG 
Sbjct: 228 YAFSVFHTHINSFGRDNYLACCLFLVLGVRKSELCEAMWREMDLTTGVWDLPKERSKTGV 287

Query: 232 IITVELPDGFMKL---LAMTPIGKETFFINND---KQKMNATQFSIWF-KAKATKAGVNK 284
            I++ LP   +     L +   G    F       +  M     +    K    + G  K
Sbjct: 288 PISIPLPRQAIAWFNELQIRACGSPYVFPARRASHRPHMGPDTLNRAISKLFGREPGRKK 347

Query: 285 ------------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK--GADRIR 330
                       + H +R+   +++A  G   +        K       Y +    +  R
Sbjct: 348 QPPNKMGKLEHFTVHDLRRTFRSLAASLGIAGNVAERCLNHKLKGVEGIYDRHDYFEERR 407

Query: 331 LGIKNSRRISSVVDSDDP 348
           +  +    +   + + +P
Sbjct: 408 IAHQTVADVVEPLVNFEP 425


>gi|312126960|ref|YP_003991834.1| integrase family protein [Caldicellulosiruptor hydrothermalis 108]
 gi|311776979|gb|ADQ06465.1| integrase family protein [Caldicellulosiruptor hydrothermalis 108]
          Length = 370

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 47/316 (14%), Positives = 107/316 (33%), Gaps = 40/316 (12%)

Query: 45  PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR 104
             Y++ +     K +++    K   TL+  +S + ++    + A  +   +      I  
Sbjct: 41  EKYLAEVISQIEKGQFVE---KNEMTLQEYLSYWLENYAKTNTAPKTYKRYIELVKHITT 97

Query: 105 KSGDFDYRKITTKHIRSG----VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
             G  + +K+   H++      +E  K + S+ ++      +  K AV+ + V  N   +
Sbjct: 98  YLGKIEVQKLKPLHVQQFYTTLLEEGKLSKSTILKIHRVFHLAIKHAVQWQLVNYNVLDA 157

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--Q 218
           +  P+ +   ++ W  E   +F     +     +     L++G+R  + C      +  +
Sbjct: 158 ITPPRPERIEMKIWDIETANKFLEAIKD-DILYIPVLLALHTGMREGEICALKWDDVNLE 216

Query: 219 NNIFSIK---TQKTGTII-----------TVELPD----GFMKLLAMTPIGKETFFIN-- 258
           +    +K    +  G +I           T+ L D       +        K     N  
Sbjct: 217 DGYIVVKATLQKINGKLILKEPKSQKSIRTIALMDSTIKALKEHKERQKEKKALLQENYK 276

Query: 259 --------NDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMA 309
                   +D + ++    +  F     K        H +R   AT+    G     +  
Sbjct: 277 DENFVCAWDDGRPLDPMYVAKKFPKLIKKYNFPPIRFHDLRHTHATLLLQQGVHPKIVSE 336

Query: 310 TYGWKTVDQA-ETYTK 324
             G  T++   +TY+ 
Sbjct: 337 RLGHSTINITLDTYSH 352


>gi|317052534|ref|YP_004113650.1| integrase family protein [Desulfurispirillum indicum S5]
 gi|316947618|gb|ADU67094.1| integrase family protein [Desulfurispirillum indicum S5]
          Length = 303

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 46/288 (15%), Positives = 96/288 (33%), Gaps = 27/288 (9%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           +   L  ++ K    G L   +  ++     +I     D +   +++  +         T
Sbjct: 10  SFNKLYQKHLKCLKLGGLQPKTIDAYARALRRIGHYF-DGNVCDLSSDQLLDYFTELLDT 68

Query: 130 --PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              S+    L  ++  +   +R+ +   N  L ++ PK  +      + E   +  +  S
Sbjct: 69  HSWSAVKLDLYGLKFFYSEVLRKPW--ENI-LLIKPPK-ASRIPDILSVEQAGRLFAATS 124

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN--IFSIKTQKTGTIITVELPDGFMKLL 245
             S  ++ F      GLR  +  R  V  +        I+  K      V LPD  +++L
Sbjct: 125 TLSY-KVFFFTCYSMGLRLGEGIRLTVDDIDTGNMRVHIRDAKGNKDRLVPLPDKTLQVL 183

Query: 246 AM--TPIGKETFFINNDKQ----------KMNATQFSIWFKAKATKAGVNK-SAHGVRKF 292
                      F   + K+           ++        ++     G+ + S + +R  
Sbjct: 184 REFWAVHRHPCFLFPSRKRGLKNAHLVDLPLDRGGIQSAMQSVVRHLGLRRISCYSLRHS 243

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK----GADRIRLGIKNS 336
            AT   +AG    EL    G  ++     YT      A+  R+ + + 
Sbjct: 244 YATHMLEAGVDLLELQQILGHVSILTTARYTHLTATTANNTRVVVNSI 291


>gi|110639719|ref|YP_679929.1| integrase [Cytophaga hutchinsonii ATCC 33406]
 gi|110282400|gb|ABG60586.1| integrase [Cytophaga hutchinsonii ATCC 33406]
          Length = 308

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 35/269 (13%), Positives = 91/269 (33%), Gaps = 33/269 (12%)

Query: 100 DQIIRKSGDFDY-RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158
           + ++   G+     ++  +        +  +  +    L  ++++ K+  + +++  +P 
Sbjct: 36  NHLLPVFGNKYVVEEVEVQTFVFQKLQQGLSQKTIKDMLIVLKMVLKFGAKNKWLTYHP- 94

Query: 159 LSVERP-KRKTEGIRPWTKEDMQQFKSFWSEGSQPR-LAFEFLLYSGLRCSDSCRAGVQH 216
             ++ P +R+ + I   ++ D ++   +  E    R L     L +G+R  + C    + 
Sbjct: 95  FDIQFPTQREKQTIEVLSRGDQRKVMHYVQEHFTFRNLGIYICLSAGIRIGEICALTWED 154

Query: 217 LQ--NNIFSIKTQ---------------------KTGTIIT-VELPDGFMKLLAMTP--I 250
           +     I  I+                       KT   I  + +    +K+L      I
Sbjct: 155 VDTERGIIHIRRTIQRIYNIEDGMRKTELMLDTPKTKNSIREIPMSGDLLKMLKPVKKII 214

Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMA 309
               F + ND +      +  ++K    +  + +   HG+R   AT   ++      +  
Sbjct: 215 NNSFFVLTNDVKPTEPRTYRSYYKKLMKELALPDLKFHGLRHSFATRCIESKCDYKTVSV 274

Query: 310 TYGWKTVDQA-ETYTK-GADRIRLGIKNS 336
             G   +      Y     ++ +  I   
Sbjct: 275 LLGHSNISTTLNLYVHPNLEQKKKAIDQM 303


>gi|320352402|ref|YP_004193741.1| integrase family protein [Desulfobulbus propionicus DSM 2032]
 gi|320120904|gb|ADW16450.1| integrase family protein [Desulfobulbus propionicus DSM 2032]
          Length = 415

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 49/337 (14%), Positives = 104/337 (30%), Gaps = 53/337 (15%)

Query: 43  FIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI 102
           F     +A+ G     E +++ +           +Y  S        N+R S+E+     
Sbjct: 66  FFKFVATAVKGFVNPIESLDTFKTHKGAASDEFKKYLASFLAEQNTKNTRRSYENQVKLF 125

Query: 103 IRKSGDFDYRKITTKHIRSGVE----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINP- 157
              +G  D  +I  + I +  +     ++H  S+      ++   FK+  R+     NP 
Sbjct: 126 FTWAG-KDLAEIDIQAILAYRDHLRNEKRHKDSTIWNKFVALNRFFKFVERENRKFKNPI 184

Query: 158 -CLSVER--PKRKTEGIRPWTKEDMQQFKS----FWSEGSQPRLAFEFLLYSGLRCSDSC 210
               ++   PK+        +  + ++         + G +       +L  GLR ++  
Sbjct: 185 FFKGLKLIFPKKDKGYYSVLSTAESERLLKQVNKRTAIGKRDYALLLLILVYGLRANEVA 244

Query: 211 RAGVQHLQNNIFSIKTQ--------------KTGTIITVELPDGFMKLLAMTPIGKETF- 255
               ++L+      + +              KT  I++      F   L        T  
Sbjct: 245 GLRHKNLERERVKGQQKAWIVDRKGKFQNRPKTAIILSGRALRAFDDWLDTVGRQGVTVD 304

Query: 256 -------------------FINNDK-QKMNATQFSIWFKAKATKAGVNK-----SAHGVR 290
                                 + K Q ++        K    KA +++     S H +R
Sbjct: 305 GETPVFLPFIYDRNNQELVIRRDRKHQPLSVKAVENVVKKYLVKAKISREEATLSPHALR 364

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
             + T+ A  G    ++    G + ++    Y   A 
Sbjct: 365 HTAFTMLAQEGVKLQDIQKLAGHQDINTTMIYVHAAQ 401


>gi|229588986|ref|YP_002871105.1| putative phage integrase [Pseudomonas fluorescens SBW25]
 gi|229360852|emb|CAY47711.1| putative phage integrase [Pseudomonas fluorescens SBW25]
          Length = 480

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 44/298 (14%), Positives = 98/298 (32%), Gaps = 30/298 (10%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--K 127
           T K L + Y +     S+  ++    +S  + I    GD D R  T + +++  +     
Sbjct: 186 TFKSLSALYMEERK-DSIEASTMRDVKSSCEAISVILGDLDMRGHTREDMKNLRDKLLED 244

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186
              S+  + +T +  +  WAV   Y+       ++  K        ++++ ++   +   
Sbjct: 245 RKGSTVNKLMTRLSTVMDWAVNNGYLTKGFDKGLKLSKDADSSREAFSQDQVKALMAHAN 304

Query: 187 --SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSI-------KTQKTGTIIT- 234
                +  R A    + +G R  +  +     ++    ++ I       KT KT   +  
Sbjct: 305 SLPVDAWQRWALSLGVITGARIEELRQLTKADVKQVGGVWVIDINRNDGKTAKTKNALRV 364

Query: 235 VELPDG-----FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK-ATKAGVNKSAHG 288
           + L DG                    F     Q  N    +   +   +  A   ++ H 
Sbjct: 365 IPLTDGAYGFDLQAFREFVDSSDSRLFTLGAGQFSNL--LNGALRDVLSLSADRTQTFHS 422

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVVDS 345
           +R   A     A        +  G  +   + + Y  G+      ++  R   ++V +
Sbjct: 423 LRHSLAGALKAAEVPVGTAESILGHASGSISYDLYGAGS-----AVEAGRMAEALVSA 475


>gi|89886018|ref|YP_516215.1| hypothetical protein SGPHI_0037 [Sodalis phage phiSG1]
 gi|89191753|dbj|BAE80500.1| hypothetical protein [Sodalis phage phiSG1]
 gi|125470048|gb|ABN42240.1| gp33 [Sodalis phage phiSG1]
          Length = 364

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 54/339 (15%), Positives = 103/339 (30%), Gaps = 40/339 (11%)

Query: 17  RHGKIIYYFRKGHGRRIR--LPYPHESTFI---PAYMSALTGST---PKREYINSPRKKP 68
           R    I  +R+   + +   +     + F     AY                  + +K+ 
Sbjct: 10  RKNDPICRYRETGEKTLSGAMAGSRTAEFAHACDAYREFYLRERFAWENATEQETEKKQQ 69

Query: 69  TTLKWLISEYRK----SAHWGSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSG 122
            TLK L+  Y            ++ +        FD ++ +        +++    + S 
Sbjct: 70  LTLKSLLIFYFGKLCDDVELNRISRSYFKGQGYNFDSLMSQFNRNSPPIKQVAPPDLASI 129

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
                    +       +R  +  A+       NPC    +    T  + P      +Q 
Sbjct: 130 ---------TTHNHRVFLRRAYGLAIEVGMCIKNPCHITRKNLYYTSVVPPEKFATREQV 180

Query: 183 KSFWSEG-SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ----------KTGT 231
           K+  S G  + RLA  F+   G+R S+       ++  +   I +           K G 
Sbjct: 181 KTLMSIGEPRQRLAVYFVAACGMRISEVAALRWNNIYTDTLVIDSHLTEAGILPGLKYGI 240

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKM-NATQFSI-WFKAKATKAGV---NKSA 286
              + +     +LL   P   +  F         N   F     K    KAG+    KS 
Sbjct: 241 RTLLTVTTELHQLLEQIPRQGKYLFEKRGGGTYANVNAFRRGVLKDLLQKAGLTAEGKSF 300

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
           H +R ++ ++    G    ++ A  G  +       Y  
Sbjct: 301 HALRHYAVSVWVSRGIQIEQISAWLGHASPAITLAVYAH 339


>gi|53714740|ref|YP_100732.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|52217605|dbj|BAD50198.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
          Length = 400

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 49/309 (15%), Positives = 104/309 (33%), Gaps = 32/309 (10%)

Query: 59  EYINSPRKKPTTLKWLISEYRKS---AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT 115
           E ++  R    T+  +  EY  S   +   S A++ +  + S  +     + DF +  + 
Sbjct: 95  EKVSVKRTNRKTVADVFQEYMTSLIKSGRKSYALSIKQLYNSLLE--FNHNLDFYFSVMD 152

Query: 116 T---KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAIN--PCLS--VERPKRKT 168
               K     +  R+   ++      ++R ++  A+ ++ V+ +  P     V R  + T
Sbjct: 153 VAWLKRYELFLRERQLAENTIGIRFRTLRAVYNVAIEEDAVSSDCYPFKKFKVSRLHQDT 212

Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS----GLRCSDSCRAGVQHLQNNIFSI 224
              R  TK D+++   F S     R   +   ++    G+   D       +L +     
Sbjct: 213 VK-RALTKVDIERVLQFQSSNRYMRFPIDIFTFTYYCGGINFKDIAHLTKANLIDGRLIY 271

Query: 225 KTQKTGTIITVELPDGFMKLLAMTP-IGKETFFINNDKQKMNATQFSIWFKAKATKAG-- 281
           K QKT  +I + L    + L+           F       +   Q +       TK    
Sbjct: 272 KRQKTKKLIKIPLQPQALALIKKYHDTESPYLFPILSPLHITDEQKANRIHKVITKVNDR 331

Query: 282 -----------VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
                      +  + +  R   AT+   AG +   +    G  +    + Y    D  +
Sbjct: 332 LKQIGKTLNLPITLTTYVARHSQATVMKKAGVSTAVIREIMGHSSERVTQIYLDSFDNEQ 391

Query: 331 LGIKNSRRI 339
           +  +  + +
Sbjct: 392 IN-EAMKNL 399


>gi|191637856|ref|YP_001987022.1| Integrase [Lactobacillus casei BL23]
 gi|18148988|dbj|BAB83530.1| integrase [Bacteriophage PL-2]
 gi|190712158|emb|CAQ66164.1| Integrase [Lactobacillus casei BL23]
 gi|327381925|gb|AEA53401.1| Type I restriction modification DNA specificity domain protein
           [Lactobacillus casei LC2W]
 gi|327385085|gb|AEA56559.1| Type I restriction modification DNA specificity domain protein
           [Lactobacillus casei BD-II]
          Length = 383

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 37/358 (10%), Positives = 97/358 (27%), Gaps = 50/358 (13%)

Query: 23  YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSA 82
           + FR   G+       ++S F     + +  +  + E  +       T      ++ ++ 
Sbjct: 12  WAFRASTGKDDIRRQVYKSGFKTRREATIAAAKIEEELDSGKIVSDPTFADYFDKWIEAY 71

Query: 83  HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS----------S 132
             G  +  +   +      I     D     I     ++ ++     P           +
Sbjct: 72  KIGRHSEVTDEWYTIVAGYIREYFKDTKLSVIDRTAYQAFLDWLGTNPRKRSEQPLSRST 131

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLS--VERPKRKTEGIRPWTKED----MQQFKSFW 186
             +  + +R + K A+       +      +     K    +  + E+    ++      
Sbjct: 132 VSRVNSYVRAVLKDAIEDGLTKHDFTRRAIISGKPAKDPSAKFLSVEEFKHVIEIADRHA 191

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--------NNIFSIKTQK---------- 228
                       + Y+G R  ++       +         +  +  K +K          
Sbjct: 192 DLSHLSNYVVLIMAYTGARFEEAIGISWDRVNFKEQTITIDRSWQYKKRKQHDNFGGLKN 251

Query: 229 TGTIITVELPDGFMKLLAMTP-------------IGKETFFINNDKQKMNATQFSIWFKA 275
             ++ TV +P   + +L                         N+  + +     +   K 
Sbjct: 252 AQSLRTVPIPSQLVLILKRLRKEQQENALKDGYRDSDNLVCRNDWHRVVTNETVNNTVKR 311

Query: 276 KATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET-YTKGADRIR 330
               A      ++HG+R    ++   AG     +    G  ++      Y    D ++
Sbjct: 312 LCGYAKTKNVITSHGLRHSHGSMLLFAGVDIMAISRRLGHASIQITMRVYLHEVDEMK 369


>gi|319939125|ref|ZP_08013489.1| site-specific recombinase [Streptococcus anginosus 1_2_62CV]
 gi|319812175|gb|EFW08441.1| site-specific recombinase [Streptococcus anginosus 1_2_62CV]
          Length = 410

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 47/310 (15%), Positives = 117/310 (37%), Gaps = 48/310 (15%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR------KHTPS 131
           Y +S     ++ ++  + +     I+++ G    + I+ + +++            ++ +
Sbjct: 87  YYES----EVSQHTYSTRQPALKLIMKRFGKKKLKDISVRDVQNFRTWLLSKNGGNYSQA 142

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-FKSFWSEGS 190
            A     + R    +AV  +Y+  N  + V+   +    +  WTK++ ++   + + E  
Sbjct: 143 YAALTFGTFRKTLDFAVNMQYLDTNISMKVKAISKGKSVVEYWTKQEFEEVISNIYIEDF 202

Query: 191 QPRLAFEFL---LYSGLRCSDSCRAGVQHLQ--------NNIFSIKTQKTGTI------- 232
              L F  L     +G+R ++       ++         N++  +K++K           
Sbjct: 203 YEHLCFVLLWLYFCTGVRVNEGTALWWNNVDFEKKELRINHMLIMKSKKNWRRQNHTKTD 262

Query: 233 ---ITVELPDGFMKLL-----AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284
               T+ L +  + +L       +  GK  F ++ D   M  +  S   K  A  A V++
Sbjct: 263 SGLRTISLDNDTLTVLKDWKERQSKFGKVNFILSYDGNPMLKSTISRIIKRYAKLADVHE 322

Query: 285 -SAHGVRKFSATISA-DAGATAHELMATYGWKTVDQA-ETYTK---GADRIRLGIKNSRR 338
             A G+R   A+    +  A+   +    G  + +   + Y     G D+     + +  
Sbjct: 323 IQAKGLRHSHASYLINELNASVLIVSKRLGHSSPEITLKHYAHLWSGVDK-----ELADN 377

Query: 339 ISSVVDSDDP 348
           ++ ++  + P
Sbjct: 378 MAGLISINHP 387


>gi|315656318|ref|ZP_07909209.1| phage integrase [Mobiluncus curtisii subsp. holmesii ATCC 35242]
 gi|315493320|gb|EFU82920.1| phage integrase [Mobiluncus curtisii subsp. holmesii ATCC 35242]
          Length = 358

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 45/283 (15%), Positives = 89/283 (31%), Gaps = 29/283 (10%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESR-- 126
           T +  ++ Y      G +  N+  + E     +++   G      I +K + +       
Sbjct: 57  TFENFVAVYVADMK-GRIKENTWGTKEHILYKKLVPYFGKRKMCDIHSKEVIAWQNEMLG 115

Query: 127 ----KHTPSSAIQFLTS---MRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKED 178
                  P S +   T    +  +F  AVR   + +NP        K K   +  WTK +
Sbjct: 116 YRDKNGKPYSPVYLKTLHNQLSAVFNHAVRHYNLKVNPAAQAGNMGKPKGREMLFWTKAE 175

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII----- 233
             +F     +      AFE L + G+R  +              ++   K+   I     
Sbjct: 176 YLKFAEAMMDKPLSYYAFEMLYWCGVREGELLALTPGDFDFEKQTVTISKSYQRIKGKDV 235

Query: 234 -----------TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
                       +++P    + +             +    +  +         A +AGV
Sbjct: 236 ITDPKTPKSNRVIQMPAFLCEEMRDYIKSLYGVKPTDRIFTVTKSYLHREMDRGAKEAGV 295

Query: 283 NK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            +   H +R    ++  D G TA  +    G +++D    Y  
Sbjct: 296 KRIRIHDLRHSHISLLIDMGFTALAIADRVGHESIDITYRYAH 338


>gi|260844276|ref|YP_003222054.1| putative integrase [Escherichia coli O103:H2 str. 12009]
 gi|257759423|dbj|BAI30920.1| putative integrase [Escherichia coli O103:H2 str. 12009]
          Length = 437

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 25/233 (10%), Positives = 71/233 (30%), Gaps = 46/233 (19%)

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           +   ++T++  +F++A    Y+  NP   ++  K+      P T+++  +         Q
Sbjct: 160 TVNYYMTTIAGMFQFAADHGYLEANPFEGIKPLKKARAEPDPLTRDEFIRLIDAC-RHQQ 218

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT----------------- 234
            +  +   +Y+G+R  +      + +     +I  ++  T +                  
Sbjct: 219 TKNLWSLAVYTGMRHGELVSLAWEDIDLKAGTITIRRNYTKLDEFTLPKTEASTNRVIHL 278

Query: 235 ----VELPDGFMKLLAMTPIGKETFFINNDKQK-----------------------MNAT 267
               + +     ++  +         +    +                            
Sbjct: 279 IQPAISVLKNQAEMTRLGKQHHIKVQLREYGRSVNHECTFVFNPQVVRKSKQVGFIYKVD 338

Query: 268 QFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
                +++   +AG+ ++ A+  R   A  S  AGA    + +  G  +    
Sbjct: 339 SIGDSWESAIKRAGIRHRKAYQSRHTYACWSLSAGANPSFIASQMGHASAQMV 391


>gi|227876810|ref|ZP_03994919.1| phage integrase family protein [Mobiluncus mulieris ATCC 35243]
 gi|227842707|gb|EEJ52907.1| phage integrase family protein [Mobiluncus mulieris ATCC 35243]
          Length = 397

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 59/380 (15%), Positives = 117/380 (30%), Gaps = 60/380 (15%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPK--------REYINSPR 65
           E+ + G+   Y+RKG  + +             +++A   +  K         E ++  +
Sbjct: 26  EKLKSGRYRAYWRKGSIKVLADETFPNRQLASDWLAAQQVAIAKGLIDPELAEEELSPVK 85

Query: 66  KKPTTLKWLISEYRKSAH-WGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGV 123
               T K     Y       G +   +  S++S F   +    GD     IT + ++   
Sbjct: 86  ADVPTFKEWKETYLARREKEGGMKPKTIQSYKSCFKAHLEDTFGDMLINLITNQQVKDWY 145

Query: 124 ESRKHTPSSAIQ-FLTSMRVLFKWAVRQEYVAINPCL---SV-ERPKRKTEGIRPWTKED 178
            S       A +        L   AV +  +  +P     +V ++P          T + 
Sbjct: 146 NSFDGKKLGARKSTYRVFSALMNAAVDEGLIDASPVHVKGAVSKKPTTDNHRNIVATCDQ 205

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----------------NNIF 222
           + +      +  + R+A     +  LR  +      + ++                   F
Sbjct: 206 VSRLAEAMPD--EYRIAVLLAFWCSLRFGEITELRRKDVRFKGEKAVISVTRAVQYAAGF 263

Query: 223 SIKTQKTGTII---TVELPDGFMKLLAM-----TPIGKETFFINNDKQKMNATQFSIWFK 274
                   +      + +P   +  L           KE+  ++      +      W+ 
Sbjct: 264 GYTVGPPKSEAGIRDIAVPPTIVADLKGHIAKYVAPDKESLLVH------SPASLVKWYS 317

Query: 275 --------AKATKAGVNK----SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
                   AKA +A  +     + HG+R    T++  +GAT  ELM   G    +    Y
Sbjct: 318 NKSMNGHFAKAKRAVPDLDQRFTFHGLRHSGLTLAGQSGATLAELMHRAGHANAETVMIY 377

Query: 323 TKG-ADRIRLGIKNSRRISS 341
                DR     +    IS+
Sbjct: 378 QHATQDRDAAIAEKMSAISN 397


>gi|197105806|ref|YP_002131183.1| phage integrase [Phenylobacterium zucineum HLK1]
 gi|196479226|gb|ACG78754.1| phage integrase [Phenylobacterium zucineum HLK1]
          Length = 310

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 39/295 (13%), Positives = 93/295 (31%), Gaps = 30/295 (10%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS---GVESR 126
           +   LI  +         A     S ++    + R+ G  D  ++  + + +      ++
Sbjct: 17  SFADLIDLHVADMKAVGRAPG--RSKDATLAMLKRELGSLDAVELGRERLIAFGRARAAQ 74

Query: 127 KHTPSSAIQFLTSMRVLFKWA-----VRQEYVAINPCL-SVERP----KRKTEGIRPWTK 176
              P +    L  +R++   A     +     A++    +++R     K      RP T+
Sbjct: 75  GAGPVTVSMDLGMIRLVISHAAAVHGLPLSLEAVDLARIALKRLGLIGKSNERDRRP-TE 133

Query: 177 EDMQQFKSFWSEGSQPRLAFE----FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
           E++++  + +++  +  +       F + + LR  + CR     L      +  +     
Sbjct: 134 EEIERLVAHFNDNPRQVIPMARIIRFAIATALRQEEICRVTWADLNPRTKMLTVRDRKDP 193

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDK---------QKMNATQFSIWFKAKATKAGV- 282
              +  D  + LLA++                                 F     +  + 
Sbjct: 194 RAKKGNDQRIPLLAVSGYDALALIEEQRGCRGNEDDRIFPYCHRSAGTAFTRACKELQIE 253

Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
           +   H +R  + +   +AG T  ++    G K       YT         +  S+
Sbjct: 254 DLHFHDLRHEATSRLFEAGFTIEQVALVSGHKDWKMLRRYTHLRPEALHAVAASK 308


>gi|153951127|ref|YP_001398120.1| phage integrase family site specific recombinase [Campylobacter
           jejuni subsp. doylei 269.97]
 gi|152938573|gb|ABS43314.1| site-specific recombinase, phage integrase family [Campylobacter
           jejuni subsp. doylei 269.97]
          Length = 354

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 26/191 (13%), Positives = 71/191 (37%), Gaps = 18/191 (9%)

Query: 169 EGIRPWTKEDMQQFKSFWSEGS------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-- 220
           +     ++E++++F              + +L  + ++++G+R S++    +  +     
Sbjct: 163 KLPEFMSEEELKKFLDAIENADFKNNTIRNKLIIKIIIFTGIRVSEAINIKIGDISEEND 222

Query: 221 --IFSIKTQKTGTIITVE----LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274
             I  I+ +     + +     + D    +           F+N     +  +  S   +
Sbjct: 223 LYIIRIRAKGNKYRVVMIKKELIYDLLKNVSINYMSKDALLFVNKKGTPLTQSYVSRIVE 282

Query: 275 AKATKAGVNKS---AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330
               +AG+ K    AH +R   AT+          +    G  +++ +  YT    D+++
Sbjct: 283 QLLFRAGIRKQKNGAHMLRHTFATLLYKKQKDLVLVQEALGHASLNTSRIYTHFDNDKLK 342

Query: 331 LGIKNSRRISS 341
           L  + ++ +S 
Sbjct: 343 LAAQVAKELSD 353


>gi|23501523|ref|NP_697650.1| phage integrase family site specific recombinase [Brucella suis
           1330]
 gi|62289597|ref|YP_221390.1| phage integrase family site specific recombinase [Brucella abortus
           bv. 1 str. 9-941]
 gi|82699526|ref|YP_414100.1| phage integrase [Brucella melitensis biovar Abortus 2308]
 gi|161618609|ref|YP_001592496.1| tyrosine recombinase xerC [Brucella canis ATCC 23365]
 gi|163842909|ref|YP_001627313.1| tyrosine recombinase xerC [Brucella suis ATCC 23445]
 gi|189023854|ref|YP_001934622.1| Phage integrase [Brucella abortus S19]
 gi|254688916|ref|ZP_05152170.1| Phage integrase [Brucella abortus bv. 6 str. 870]
 gi|254693398|ref|ZP_05155226.1| Phage integrase [Brucella abortus bv. 3 str. Tulya]
 gi|254697049|ref|ZP_05158877.1| Phage integrase [Brucella abortus bv. 2 str. 86/8/59]
 gi|254703973|ref|ZP_05165801.1| Phage integrase [Brucella suis bv. 3 str. 686]
 gi|254707651|ref|ZP_05169479.1| Phage integrase [Brucella pinnipedialis M163/99/10]
 gi|254709767|ref|ZP_05171578.1| Phage integrase [Brucella pinnipedialis B2/94]
 gi|254729947|ref|ZP_05188525.1| Phage integrase [Brucella abortus bv. 4 str. 292]
 gi|256031257|ref|ZP_05444871.1| Phage integrase [Brucella pinnipedialis M292/94/1]
 gi|256257164|ref|ZP_05462700.1| Phage integrase [Brucella abortus bv. 9 str. C68]
 gi|256369075|ref|YP_003106583.1| site-specific recombinase, phage integrase family [Brucella microti
           CCM 4915]
 gi|260168393|ref|ZP_05755204.1| site-specific recombinase, phage integrase family protein [Brucella
           sp. F5/99]
 gi|260566779|ref|ZP_05837249.1| phage integrase [Brucella suis bv. 4 str. 40]
 gi|261213648|ref|ZP_05927929.1| phage integrase [Brucella abortus bv. 3 str. Tulya]
 gi|261315145|ref|ZP_05954342.1| phage integrase [Brucella pinnipedialis M163/99/10]
 gi|261317299|ref|ZP_05956496.1| phage integrase [Brucella pinnipedialis B2/94]
 gi|261754625|ref|ZP_05998334.1| phage integrase [Brucella suis bv. 3 str. 686]
 gi|261757854|ref|ZP_06001563.1| phage integrase [Brucella sp. F5/99]
 gi|265988337|ref|ZP_06100894.1| phage integrase [Brucella pinnipedialis M292/94/1]
 gi|297248011|ref|ZP_06931729.1| tyrosine recombinase xerC [Brucella abortus bv. 5 str. B3196]
 gi|23347432|gb|AAN29565.1| site-specific recombinase, phage integrase family [Brucella suis
           1330]
 gi|62195729|gb|AAX74029.1| site-specific recombinase, phage integrase family [Brucella abortus
           bv. 1 str. 9-941]
 gi|82615627|emb|CAJ10614.1| Phage integrase:Phage integrase, N-terminal SAM-like [Brucella
           melitensis biovar Abortus 2308]
 gi|161335420|gb|ABX61725.1| Tyrosine recombinase xerC [Brucella canis ATCC 23365]
 gi|163673632|gb|ABY37743.1| Tyrosine recombinase xerC [Brucella suis ATCC 23445]
 gi|189019426|gb|ACD72148.1| Phage integrase [Brucella abortus S19]
 gi|255999235|gb|ACU47634.1| site-specific recombinase, phage integrase family [Brucella microti
           CCM 4915]
 gi|260156297|gb|EEW91377.1| phage integrase [Brucella suis bv. 4 str. 40]
 gi|260915255|gb|EEX82116.1| phage integrase [Brucella abortus bv. 3 str. Tulya]
 gi|261296522|gb|EEY00019.1| phage integrase [Brucella pinnipedialis B2/94]
 gi|261304171|gb|EEY07668.1| phage integrase [Brucella pinnipedialis M163/99/10]
 gi|261737838|gb|EEY25834.1| phage integrase [Brucella sp. F5/99]
 gi|261744378|gb|EEY32304.1| phage integrase [Brucella suis bv. 3 str. 686]
 gi|264660534|gb|EEZ30795.1| phage integrase [Brucella pinnipedialis M292/94/1]
 gi|297175180|gb|EFH34527.1| tyrosine recombinase xerC [Brucella abortus bv. 5 str. B3196]
          Length = 308

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 80/239 (33%), Gaps = 12/239 (5%)

Query: 93  ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEY 152
            SF    D+I++ +    + +     I   +  R ++ ++  + + ++  L + A +   
Sbjct: 63  RSFLGEIDEILKGARFSGFDQEMLDSIIGTLRERGNSNATINRKMAALSKLLRKAHKMGD 122

Query: 153 VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY-SGLRCSDSCR 211
           +  N    + R K +   IR   +E+ ++  +      +        L  +G R  ++  
Sbjct: 123 I-FNLPEFI-RQKERVGRIRFLEQEEEKRLFAAIKSRCEDSYRLSVFLVDTGCRLGEAIG 180

Query: 212 AGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI 271
                +Q    +    K+    TV L     K   + P  +    +      +N  +F  
Sbjct: 181 LTWNDIQEQRVTFWVTKSNRSRTVPLTRRARKASHI-PRER----LKGPFSMLNQVRFRQ 235

Query: 272 WFKAKATKAGVNKS----AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            +     + G+        H +R   A+     G     +    G +T+     Y   A
Sbjct: 236 IWNEAKAEVGLGADDQIVPHILRHTCASRLVRGGIDIRRVQMWLGHQTLQMTMRYAHLA 294


>gi|88856877|ref|ZP_01131529.1| phage-related integrase [marine actinobacterium PHSC20C1]
 gi|88813845|gb|EAR23715.1| phage-related integrase [marine actinobacterium PHSC20C1]
          Length = 333

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 39/284 (13%), Positives = 83/284 (29%), Gaps = 37/284 (13%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVE-- 124
           L+ L+ +   SA       + R +FE  F  I +++G          +    +    +  
Sbjct: 17  LRRLVDQRGASARTI---ESYRDAFELLFSYIEKRTGTSPSTLQMADLDAPLVLDFFDYL 73

Query: 125 --SRKHTPSSAIQFLTSMRVLFKWAVRQE-----YVAINPCLSVERPKRKTEGIRPWTKE 177
              R ++  +    L ++    ++A  ++       +    +  +R  R   G    ++E
Sbjct: 74  ETERHNSARTRNVRLAAIHSFMRYAAVRDPASLPITSRVLAIGAKRFDRPVLGY--LSRE 131

Query: 178 DMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT--QKTGT 231
            +    +        G +  +       +G R S+     V  +  +  S      K   
Sbjct: 132 QITAILAAPDRNTWSGRRDAVMLATTYNTGARVSEITALRVSDILADRQSAVHLHGKGRK 191

Query: 232 IITVEL-----PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA------ 280
              + L      D    L  +        F N     M+ +            A      
Sbjct: 192 QRVIPLWKNTASDLRSWLGRINTAPDAPVFPNKAGAPMSRSGVRDRLDRAVAIAEQGCPS 251

Query: 281 --GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
             G + S H +R  +A     +G     +    G  +    + Y
Sbjct: 252 LRGQHISPHTLRHATAMHLLQSGTDLATIALWLGHSSPATTQQY 295


>gi|288801960|ref|ZP_06407401.1| site-specific recombinase, phage integrase family [Prevotella
           melaninogenica D18]
 gi|288335395|gb|EFC73829.1| site-specific recombinase, phage integrase family [Prevotella
           melaninogenica D18]
          Length = 281

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 43/283 (15%), Positives = 96/283 (33%), Gaps = 27/283 (9%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132
            +++ ++K     +LA N+  S+    D  +    + + + +       G       P +
Sbjct: 14  NMVTTFQKHLAKTNLAKNTITSYLWTVDYFLNHYKEVNKKNLLA---YKGYLVENFKPQT 70

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI--RPWTKEDMQQFKSFWSEGS 190
               L ++    ++  +++         V+  K + +       +  D +  K+      
Sbjct: 71  VNLRLQAINKYLEFTKQEKL-------KVKFVKVQQKNFLENVISDADYKFLKTKLKTDG 123

Query: 191 QPRLAFE--FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM----KL 244
                F   F+  +G R S+      +H+Q     +   K G I  + +P        K 
Sbjct: 124 YDEWYFIVWFMAATGARVSELLHIKAEHVQVGYLDL-YSKGGKIRRLYIPKTLRIEATKW 182

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAG 301
           +    +     F+N   Q++     +   K  A K G+N+     H  R   A    D  
Sbjct: 183 IKEKELSSGYIFLNRFGQRITTRGIAQQLKHFAEKYGLNRDVVYPHSFRHRFAKNFLDRF 242

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
                L    G ++++    Y +     R   +  + ++ VV+
Sbjct: 243 NDLALLADLMGHESIETTRIYLR-----RTASEQQKIVNRVVN 280


>gi|260557960|ref|ZP_05830172.1| shufflon-specific DNA recombinase [Acinetobacter baumannii ATCC
           19606]
 gi|260408470|gb|EEX01776.1| shufflon-specific DNA recombinase [Acinetobacter baumannii ATCC
           19606]
          Length = 337

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 40/321 (12%), Positives = 100/321 (31%), Gaps = 24/321 (7%)

Query: 14  ERTRHGK-IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           + TR G       R    R               + +         +  + P K   + +
Sbjct: 3   KPTRRGNAWRIEVRFKGKRYAATRDTASE--CEQWAATKLLELQSEQPTSEPEKIHISFQ 60

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTP 130
            L   Y +       +    +       +   +  D     +T   ++   + R  +   
Sbjct: 61  ALFDMYYQDEGRKMKSARLIVQMLKCLKKNWGELADESIHNLTPALVKQWRDKRLKQVKG 120

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAI-NPCLSVERPKRKTEGIRPWTKEDMQQFKS----- 184
           ++ I+ +     +F +A ++ ++   NP   + +P       +  + + + +        
Sbjct: 121 ATVIREMAMYSSVFDFARKELFLTKENPFKEITKPSAPPPRHQRISDDHINKVIKGLDYE 180

Query: 185 --FWSEGSQPRLA--FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
                   + R+A  F F L + +R  +        +  +   +   K G+   V L   
Sbjct: 181 WGKTPTQPRHRVAWSFLFALETAMRKGEILSVQKHLIFTDFIRLLDTKNGSSRDVPLTAK 240

Query: 241 FMKLLAMTPIG-KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS 297
             ++L+  P    +T  +      + +  F + ++    + G++   + H  R  + T  
Sbjct: 241 AKEMLSWLPEDPNDTRMV-----PLTSNAFRLIWQRNLRRVGLDGVITFHDSRHEAITRF 295

Query: 298 A-DAGATAHELMATYGWKTVD 317
             +       L    G KT+ 
Sbjct: 296 VHEYRLPVEILAKITGHKTIS 316


>gi|229000404|ref|ZP_04159960.1| Site-specific recombinase, phage integrase [Bacillus mycoides
           Rock3-17]
 gi|228759361|gb|EEM08351.1| Site-specific recombinase, phage integrase [Bacillus mycoides
           Rock3-17]
          Length = 360

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 27/213 (12%), Positives = 68/213 (31%), Gaps = 22/213 (10%)

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-------E 188
            +  ++    W +++  + ++P +  E  ++ ++ I   TK+++ +             +
Sbjct: 121 RIKRLKTFINWCLKEALIKLDPFIKFEGFRKDSKEIDFLTKDELNRLLKVAKSYSNKSYK 180

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----NNIFSIKTQKTGTIITVELPDG---- 240
             +  +    L+    R +++       +       I      K+     V L +     
Sbjct: 181 HFRDYVLLHLLIDGMFRITEALLLSPLDIDHTNKTTIIRSNNAKSRKARVVPLSNKTYRL 240

Query: 241 ----FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSA 294
                 +  A      +  F++   + ++        +  A +A + K    H +R  +A
Sbjct: 241 LMQLLEENEAFEGEVDDLIFLSLSGRMLSKNNVLRDMRKYAVEANITKRFYLHLIRHSAA 300

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           T     G     L    G   +     Y   AD
Sbjct: 301 THHLSTG-DIESLRKILGHIDLRMVLHYAHMAD 332


>gi|225852160|ref|YP_002732393.1| tyrosine recombinase XerC [Brucella melitensis ATCC 23457]
 gi|256044336|ref|ZP_05447240.1| Tyrosine recombinase xerC [Brucella melitensis bv. 1 str. Rev.1]
 gi|256264329|ref|ZP_05466861.1| phage integrase [Brucella melitensis bv. 2 str. 63/9]
 gi|265990748|ref|ZP_06103305.1| phage integrase [Brucella melitensis bv. 1 str. Rev.1]
 gi|225640525|gb|ACO00439.1| Tyrosine recombinase xerC [Brucella melitensis ATCC 23457]
 gi|263001532|gb|EEZ14107.1| phage integrase [Brucella melitensis bv. 1 str. Rev.1]
 gi|263094603|gb|EEZ18401.1| phage integrase [Brucella melitensis bv. 2 str. 63/9]
 gi|326408660|gb|ADZ65725.1| tyrosine recombinase XerC [Brucella melitensis M28]
 gi|326538383|gb|ADZ86598.1| tyrosine recombinase xerC [Brucella melitensis M5-90]
          Length = 308

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 80/239 (33%), Gaps = 12/239 (5%)

Query: 93  ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEY 152
            SF    D+I++ +    + +     I   +  R ++ ++  + + ++  L + A +   
Sbjct: 63  RSFLGEIDEILKGARFSGFDQEMLDSIIGTLRERGNSNATINRKMAALSKLLRKAHKMGD 122

Query: 153 VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY-SGLRCSDSCR 211
           +  N    + R K +   IR   +E+ ++  +      +        L  +G R  ++  
Sbjct: 123 I-FNLPEFI-RQKERVGRIRFLEQEEEKRLFAAIKSRCEDSYRLSVFLVDTGCRLGEAIG 180

Query: 212 AGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI 271
                +Q    +    K+    TV L     K   + P  +    +      +N  +F  
Sbjct: 181 LTWNDIQEQRVTFWVTKSNRSRTVPLTRRARKASHI-PRER----LKGPFSMLNQVRFRQ 235

Query: 272 WFKAKATKAGVNKS----AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            +     + G+        H +R   A+     G     +    G +T+     Y   A
Sbjct: 236 IWNEAKAEVGLGADDQIVPHILRHTCASRLVRGGIDIRRVQMWLGHQTLQMTMRYAHLA 294


>gi|124514645|gb|EAY56157.1| putative phage integrase [Leptospirillum rubarum]
 gi|206602352|gb|EDZ38833.1| Putative phage integrase [Leptospirillum sp. Group II '5-way CG']
          Length = 345

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 42/291 (14%), Positives = 92/291 (31%), Gaps = 33/291 (11%)

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
           ++    + TTL   +  Y +          S   +        +  G      + +  I 
Sbjct: 50  VSRKEAENTTLSEALDRYDREVTINKKNPRSERIYAKT---WKKAFGSRSLASLNSTDIA 106

Query: 121 SGVESRKHTPSSAIQFLTS--MRVLFKWAVRQ-EYVA-INPCLSVERPKRKTEGIRPWTK 176
              + R  T S+ +  L    +  LF  A+++      +NP   + +PK      R    
Sbjct: 107 KFRDDRLKTVSANMVRLELALLSHLFTIAIKEWGMTGLVNPVGQIRKPKLPRGRDRRLMP 166

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------- 229
            ++    +  +E      A  F + +  R  +  R     +     ++    T       
Sbjct: 167 GELDMIAA-HTESKVLADAIRFAVETAGRREEISRMTWDLVNLKKKTVTLVNTKDKIHSD 225

Query: 230 GTIITVELPDGFMKLLAMTPIG--------KETFFINNDKQKMNATQFSIWFKAKATKAG 281
           G    V L  G +++L+  P          +         +     +    ++ +  + G
Sbjct: 226 GEKRIVPLSPGALRILSELPRRFDGRVWGVEPHSITRAFIRAKTRAR--KAYEKECEEKG 283

Query: 282 --------VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
                   V+ + H +R  + +   + G    ++ A  G KT+   + YT 
Sbjct: 284 TKPDPGFLVDLTFHDLRHEATSRFFEKGLNPMQVAAITGHKTLQMLKRYTH 334


>gi|39653675|ref|NP_945240.1| integrase [Streptococcus phage EJ-1]
 gi|38638843|emb|CAE82083.1| integrase [Streptococcus phage EJ-1]
          Length = 380

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 37/313 (11%), Positives = 97/313 (30%), Gaps = 52/313 (16%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG-DFDYRKITTKHIRSGVESRKHT 129
                S Y++      +  +S  S      +I    G      KI  K+++S ++    +
Sbjct: 69  FDQWWSFYKQ-----EIKRSSIASLNGNIKEIKDDFGIGIKVSKIDPKYVQSYLDRLDCS 123

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE-------GIRPWTKEDMQQF 182
            +   +  + + + F +A+    +  NP    + P+ +         G +   +++++  
Sbjct: 124 RNKKERNKSMLNLAFDYAIDLGIIKDNPARRAKLPRVQKTLEDWKKVGQKYLEEDEIKLL 183

Query: 183 KS---FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT---------G 230
                      +  L  EF+  +G R  ++      ++     +++   T         G
Sbjct: 184 LKELYRRPSTYRIGLLSEFMSLNGCRIGEAVGIEPHNVDYESNTLQLHGTYDHTNGYQKG 243

Query: 231 TIITVELPDGFMKLLAMT--------------------PIGKET--FFINNDKQKMNATQ 268
              + +    + + +  T                    P  K+    F   +   +    
Sbjct: 244 EKTSPKTLASYRETVMTTREKEILEEMEFMNELEKNTNPRYKDMGFIFTTKNGVPLQTNS 303

Query: 269 FSIWFKAKATKA----GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYT 323
           F++  K    +       N ++H  R    +  A+       +M   G        + YT
Sbjct: 304 FNLALKKANERLETPIQKNLTSHIFRHTLVSRLAENNVPLKAIMDRVGHSDAKTTTQIYT 363

Query: 324 KGADRIRLGIKNS 336
               +++  + + 
Sbjct: 364 HITKQMKSTVADV 376


>gi|163814066|ref|ZP_02205458.1| hypothetical protein COPEUT_00219 [Coprococcus eutactus ATCC 27759]
 gi|158450515|gb|EDP27510.1| hypothetical protein COPEUT_00219 [Coprococcus eutactus ATCC 27759]
          Length = 391

 Score = 82.8 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 40/298 (13%), Positives = 93/298 (31%), Gaps = 55/298 (18%)

Query: 88  AVNSRISFESYF----DQIIRKSGDF-----------DYRKITTKHIRSGVESR----KH 128
           +  +R+ +        + +   +  F           D  ++  + I   +++     K+
Sbjct: 51  STRTRLGYARDIKIFYEFLCEHNPYFNGKTPKDIKTDDLSRLEAEDIEEFLDAMRLYEKN 110

Query: 129 TPSSAI------QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
             +         + L+++RV F +  +   +  N    V+ PK   + I      ++  F
Sbjct: 111 GRTYTNGEQALKRKLSALRVFFAYLYKNNRIDSNAAEKVDMPKIHEKKIIRMEPNEVADF 170

Query: 183 KSFWSEGS---------------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-T 226
                 G                +       +L +G+R S+     +  +  +   IK  
Sbjct: 171 LDNVEYGDGLTERQKKYHEKNKVRDLALLSLMLSTGMRVSECVGIDIHDIDFDNMRIKII 230

Query: 227 QKTGTIITVELPDGFMKLL--------AMTPIGKE--TFFINNDKQKMNATQFSIWFKAK 276
           +K G    V   D   + L         + P        F+++  ++++        K  
Sbjct: 231 RKGGKEAFVYFSDEACEALIKYLEERKKLVPESGHENALFLSSQLKRISVRSVENIVKKY 290

Query: 277 ATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK-GADRIR 330
           +  +    + + H +R    T    A    + +    G   V+   + Y     DR R
Sbjct: 291 SLTSVPLKHITPHKLRSTFGTELYRATDDIYLVADVLGHSDVNTTRKHYADMDEDRKR 348


>gi|157737437|ref|YP_001490120.1| integrase/recombinase XerD [Arcobacter butzleri RM4018]
 gi|157699291|gb|ABV67451.1| integrase/recombinase XerD [Arcobacter butzleri RM4018]
          Length = 350

 Score = 82.8 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 32/185 (17%), Positives = 69/185 (37%), Gaps = 19/185 (10%)

Query: 165 KRKTEGIRPWTKEDMQQFKSFWSE-------GSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217
           K  T+      K+++ +F     +       G + RL  + ++Y+G+R S+     ++ +
Sbjct: 160 KSGTKLPSFMNKDEIDRFLKAIDDFEFTDNTGFRNRLIIKIIIYTGIRVSEILNLRIKDI 219

Query: 218 --QNNIFSIKTQKTGTIITV------ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF 269
             ++N++ ++ +  G    V       +       L M     +    N   +++     
Sbjct: 220 FKEDNVYMLQIRGKGNKPRVVMIKSSIIEKELQNWLDMRVCNSDLLVCNQKGERLTQAYI 279

Query: 270 SIWFKAKATKAGVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           S   +     AG+ K    AH +R   AT+          +    G   ++ +  YT   
Sbjct: 280 SRVVENILISAGIRKEKNGAHMLRHSFATLLYQKHHDLILVQEALGHADINTSRIYTH-F 338

Query: 327 DRIRL 331
           D+ RL
Sbjct: 339 DKERL 343


>gi|330468061|ref|YP_004405804.1| integrase family protein [Verrucosispora maris AB-18-032]
 gi|328811032|gb|AEB45204.1| integrase family protein [Verrucosispora maris AB-18-032]
          Length = 332

 Score = 82.8 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 34/269 (12%), Positives = 76/269 (28%), Gaps = 38/269 (14%)

Query: 85  GSLAVNSRISFES------------YFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132
             L+ ++R ++              + D +       +    T +        R  TP++
Sbjct: 33  RRLSEHTRDAYRRDVANWLAWCTDRHLDPLRVNFLHVNEYARTLESTLVARTGRPLTPAT 92

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP--WTKEDMQQFKSFWSEGS 190
             + L+++   + + V+   V  NP    +RP+   +       T +++    +     +
Sbjct: 93  VARRLSALSSWYDFLVKLRAVDTNPVADADRPRVDRDHSATIGLTPDEVDALLTAADADT 152

Query: 191 -----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ---KTGTIITVELPDGFM 242
                + R A   L   GLR  +     +  L         +   K G      L     
Sbjct: 153 GPTAARNRAAIALLADLGLRVGELVALDITDLGAERGHRSVRFVGKGGKARRRALTPSTA 212

Query: 243 KLLAMTPIGKET------------FFINNDKQKMNATQFSIWFKAKATKAGVNK----SA 286
             +      +                +     +++        +  A  A +      S 
Sbjct: 213 HAVDTYLAQRAAAEGVQVNELTGPLLVTASGARLDRHSVFRLVRRLARSAQIPAWAHLSP 272

Query: 287 HGVRKFSATISADAGATAHELMATYGWKT 315
           H +R   AT +   G    ++    G   
Sbjct: 273 HSLRHAFATTARAEGVPLEDVQDAMGHAD 301


>gi|183220599|ref|YP_001838595.1| putative integrase/recombinase [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|189910707|ref|YP_001962262.1| site-specific recombinase XerD [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167775383|gb|ABZ93684.1| Site-specific recombinase XerD [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167779021|gb|ABZ97319.1| Putative integrase/recombinase [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 298

 Score = 82.8 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 37/249 (14%), Positives = 78/249 (31%), Gaps = 13/249 (5%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLF 144
              A  +  S+     +++R                  +  R+   + +   L     LF
Sbjct: 15  HGYAQKTIRSYTLCMSRLVRYFQKSPLDLQPIDIYNFFLNLRQSNKTDSTLVLFYCAFLF 74

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGL 204
            +++R      +    V  PKRK + +  +++ ++  F    +     +  F  L  SG+
Sbjct: 75  FYSLRDR---KDMLELVPFPKRKRKAVAVFSQTEVTNFLGNCTSVC-EKSIFTLLYSSGI 130

Query: 205 RCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTP---IGKETFFINN 259
           R  +     +  +        I++ K G      L D    LL         K   F + 
Sbjct: 131 RIGEGLSLQLSDIDFERKAIFIRSGKGGHGRYAILADKTALLLRQYLEIYNPKSYLFFSQ 190

Query: 260 DKQ--KMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKT 315
             +   ++       F+     + + K  + H +R   AT   + G +   +    G   
Sbjct: 191 KGKNIPISPRTIQAAFQKIRNLSKIQKYATVHTLRHSFATHLLEDGYSLVYIQKLLGHAD 250

Query: 316 VDQAETYTK 324
           +     Y  
Sbjct: 251 IKSTMIYLH 259


>gi|115374695|ref|ZP_01461972.1| putative bacteriophage integrase [Stigmatella aurantiaca DW4/3-1]
 gi|310822738|ref|YP_003955096.1| phage integrase family protein [Stigmatella aurantiaca DW4/3-1]
 gi|115368266|gb|EAU67224.1| putative bacteriophage integrase [Stigmatella aurantiaca DW4/3-1]
 gi|309395810|gb|ADO73269.1| Phage integrase family protein [Stigmatella aurantiaca DW4/3-1]
          Length = 406

 Score = 82.8 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 33/192 (17%), Positives = 58/192 (30%), Gaps = 20/192 (10%)

Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
           K         T  + ++         + R      L +GLR  +        L      +
Sbjct: 197 KLPKPTFDFLTFGEAERLIDAAEP--EWRTLLLVALKTGLRQGELIGLQWSDLDLTQGRL 254

Query: 225 KTQ-----------KTGTIITVELPDGFMKLLAM-TPIGKETFFINNDKQKMNATQFSIW 272
             +           K G   TV+LP   +  L     +     F   D Q + A + +  
Sbjct: 255 NVRRTVWRGVTDLPKGGRERTVDLPASAVDALKAHRHLRGRFVFCQEDGQPLTAGKMAQP 314

Query: 273 FKAKATKAGVNK-----SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GA 326
            +    +AG+++       H +R   A+  A  G     +    G  T++  E Y     
Sbjct: 315 LRRALHRAGISREEGRIGWHDLRHTYASHLAMRGIPLKVIQELMGHVTIEMTERYAHLSP 374

Query: 327 DRIRLGIKNSRR 338
           D  R  +    R
Sbjct: 375 DTRREAVGVLDR 386


>gi|120554646|ref|YP_958997.1| phage integrase family protein [Marinobacter aquaeolei VT8]
 gi|120324495|gb|ABM18810.1| phage integrase family protein [Marinobacter aquaeolei VT8]
          Length = 395

 Score = 82.8 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 46/303 (15%), Positives = 100/303 (33%), Gaps = 28/303 (9%)

Query: 53  GSTPKREYINSPRKKPT--TLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDF 109
           G +P +E      +     T      ++ +      +A ++R    S +  ++  K G+ 
Sbjct: 79  GKSPAKEKARDKARVKGAETFGAWAEKWLRGYQ---MADSTRDMRRSVYTRELETKFGNQ 135

Query: 110 DYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE--RPK 165
              +IT + +R+  ++   +  P++A+     +  +++WA  +     NP   V      
Sbjct: 136 KLTEITHEDLRALTDAIVERGAPATAVHAREIVLQVYRWATERGQKVENPADLVRPASIA 195

Query: 166 RKTEGIRPWTKEDMQQFKSFW-SEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222
           R     R    E+++    +    G+ P  R A + LL + +R S+   A    +  +  
Sbjct: 196 RFEPRDRTLAPEEIRIMYQYMGRIGTSPSIRAAVKLLLLTMVRKSELTNATWSEINFSEA 255

Query: 223 SIK----TQKTGTIITVELPDGFMKLLAMTPI---GKETFFINNDKQ--KMNATQFSIWF 273
                    K      V L    M +         G +    +       M++   +   
Sbjct: 256 LWTIPKERMKRRNPHLVFLSRQAMDIFIALKTFSGGSDYVLPSRYDSDVPMSSATLNRVM 315

Query: 274 KAKATKAGVNKS------AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
                 A            H +R+ ++T+  +AG     +      +       Y K   
Sbjct: 316 TMTYKLAQKEGQLLAKFGPHDLRRTASTLLHEAGYNTDWIEKCLAHEQKGVRAIYNKAEY 375

Query: 328 RIR 330
           R +
Sbjct: 376 REQ 378


>gi|88800925|ref|ZP_01116478.1| Integron integrase; Phage integrase; Phage integrase N-terminal
           SAM-like domain [Reinekea sp. MED297]
 gi|88776370|gb|EAR07592.1| Integron integrase; Phage integrase; Phage integrase N-terminal
           SAM-like domain [Reinekea sp. MED297]
          Length = 325

 Score = 82.8 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 38/304 (12%), Positives = 93/304 (30%), Gaps = 58/304 (19%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH----T 129
           L+ + R        + N+  ++  +  + I        + +  + +   +         +
Sbjct: 10  LLPQMRDILARNHYSPNTIQTYLHWAKEYIYFHNKRHPKDLGVEELAQFLTHLATQKRVS 69

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
           PS+  Q L ++  L++  +  +   I+    +   +R        ++ ++    +     
Sbjct: 70  PSTQAQALNALVYLYRHVLEIDLGDID---FLRSQRRFKNIPTVLSQAEVTDLLNR--IR 124

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFM----- 242
            + R+    L  SGLR ++     ++ +       +I+  K      V +P+  +     
Sbjct: 125 GKLRVMDSLLYGSGLRVNECVTLRMKDVDLAMKSITIRNGKGLKARVVPIPERLVGPLQS 184

Query: 243 ------------------------KLLAMTPIGKET----FFINND--------KQKM-- 264
                                        +P   ++    F  ++          +KM  
Sbjct: 185 VMVHRKEQHIQDTLQGAGYVQLPWAFDRKSPNAAQSIQWQFLFSSGVLNVDKKSGRKMRW 244

Query: 265 --NATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
             + +      K  A +A + K    H +R   AT     G     +    G K ++   
Sbjct: 245 HCSTSTLQKAVKKAAEQAQLTKRVTCHTLRHSFATHLLTTGTDIRTIQQLMGHKDLNTTM 304

Query: 321 TYTK 324
            YT 
Sbjct: 305 IYTH 308


>gi|301048720|ref|ZP_07195729.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 185-1]
 gi|300299466|gb|EFJ55851.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 185-1]
          Length = 336

 Score = 82.8 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 45/307 (14%), Positives = 100/307 (32%), Gaps = 23/307 (7%)

Query: 26  RKGHGRRIRLPYPHESTFI--PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAH 83
           R   G+RIR  +  ++  +    Y  A       ++     R    TL  L+  + K  H
Sbjct: 28  RGRDGKRIRRKFERKAEAVAFERYTIAYA----SQKEWAGQRADRRTLSELLDIWWK-YH 82

Query: 84  WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK---HIRSGVESRKHTPSSAIQFLTSM 140
             +    ++    ++  + I   GD    +++ +     RS       + ++  + +  +
Sbjct: 83  GQNHEHGTKEF--NHLLKTISGIGDIPVSRMSKRALMDYRSMRLRDGISAATINRDMYRL 140

Query: 141 RVLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199
             +F   ++  E+   +P   +         +    K ++++  +         L     
Sbjct: 141 SGMFTKLIQLDEFSGQHPIHGLPPLAEANPEMTFLEKAEIEKLLNVLD--GDDLLVALLC 198

Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN 259
           L +G R ++        + N   +    K G   TV + +   K +      K       
Sbjct: 199 LSTGGRWTEVATLKPAQITNCRVTFLKTKNGKKRTVPISEELEKKVKEEASAKLF----- 253

Query: 260 DKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
              K++  +F    +        N++ H +R   A+     G     L    G  ++ Q 
Sbjct: 254 ---KVDYEKFCGILRRVKPDIPPNQATHILRHTFASHFMMNGGNIIALQQILGHASIQQT 310

Query: 320 ETYTKGA 326
             Y   A
Sbjct: 311 MAYAHLA 317


>gi|257866266|ref|ZP_05645919.1| integrase [Enterococcus casseliflavus EC30]
 gi|257873218|ref|ZP_05652871.1| integrase [Enterococcus casseliflavus EC10]
 gi|257800224|gb|EEV29252.1| integrase [Enterococcus casseliflavus EC30]
 gi|257807382|gb|EEV36204.1| integrase [Enterococcus casseliflavus EC10]
          Length = 389

 Score = 82.8 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 46/301 (15%), Positives = 102/301 (33%), Gaps = 48/301 (15%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHT 129
            K L   + +  H  ++   ++     +F+  I+ + G+    KIT    +  +     +
Sbjct: 71  FKQLYEVWYEQHH-KNIKETTKQRISIHFNNHILIEFGNLKIDKITPLFCQRVLNKWAES 129

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK----RKTEGIRPWTKEDMQQFKSF 185
             S  Q       +F + +    + +NP      PK     + E    +TK++++QF   
Sbjct: 130 LKSYPQLKIYTSKVFDFGILLGILTVNPMERTITPKISKTAQNESHSYYTKDELKQFFVR 189

Query: 186 WSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ----KTGTII---- 233
                  R    F  L ++G+R  ++       +   N   SI       K+G  +    
Sbjct: 190 LETLKDDRSFAFFRLLAFTGIRKGEAMALTWGDVDFKNKTISINKTLAELKSGKPVIQDV 249

Query: 234 -------TVELPDGFMKLLAMTPI----------------GKETFFINN---DKQKMNAT 267
                   VE+ +  + +L+                         F N+   ++ +    
Sbjct: 250 KTSSSNRVVEVDNQTLAILSNWKKKVLQDKLSLGLRDDNFDTSVVFCNSVYYNQNQYLYK 309

Query: 268 QFSIWFKAKATKAGVNKSA---HGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYT 323
            ++     +  +   ++     H  RK  A++  ++G +  ++    G K+    E  Y 
Sbjct: 310 SYANNVLLRLKRKFPDQKIIKVHDFRKTHASLLFESGVSIKDVSNRLGHKSTKITEDIYV 369

Query: 324 K 324
           K
Sbjct: 370 K 370


>gi|229825085|ref|ZP_04451154.1| hypothetical protein GCWU000182_00435 [Abiotrophia defectiva ATCC
           49176]
 gi|306826701|ref|ZP_07460004.1| transposase [Streptococcus pyogenes ATCC 10782]
 gi|229790457|gb|EEP26571.1| hypothetical protein GCWU000182_00435 [Abiotrophia defectiva ATCC
           49176]
 gi|304431149|gb|EFM34155.1| transposase [Streptococcus pyogenes ATCC 10782]
          Length = 396

 Score = 82.8 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 42/295 (14%), Positives = 81/295 (27%), Gaps = 46/295 (15%)

Query: 74  LISEYRKSAHWG-SLAVNSRISFESYFDQII-RKSGDFDYRKITTKHIRSGVESRKHTPS 131
           +   Y K      ++   ++   +     +     G      +     +      K    
Sbjct: 84  VCQLYEKHIRNHANVRHGTKQGRKQLMRILEKDTIGACSIENVKMSDAKEWALRMKEKGY 143

Query: 132 S---AIQFLTSMRVLFKWAVRQEYVAINPCLS-----VERPKRKTEGIRPWTKEDMQQFK 183
           S         S++  F  A++ + +  NP        +E        + P  +E +  F 
Sbjct: 144 SFITISNHKRSLKAAFYTAIQDDCIRKNPFDFHINTVIEDDTEPKIPLSPMQEESLLSFV 203

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--------NNIF--------SIKTQ 227
                  +       LL +GLR S+ C      +         ++           I+T 
Sbjct: 204 KSDKVYYKYYDELIILLGTGLRISEFCGLTDSDIDFENRTINVDHQLQYSGKKSYRIETP 263

Query: 228 KTGTIIT-VELPD----GFMKLLAMTPIGKET-------FFINNDKQKMNATQFSIWFKA 275
           KT   I  + + D       +++        T        F+  +    N   + I F+ 
Sbjct: 264 KTENGIRKIPMSDRVLEALQRVMQNRRKSDFTVDGYTGFLFLTRNGTPQNYINYDIMFRK 323

Query: 276 KATKAGVNK--------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
              K             + H +R    T  A+AG     L    G   +     Y
Sbjct: 324 LVEKYNKKHEEVLPVVTTPHTLRHTFCTNMANAGMNPKALQYLMGHANITMTLNY 378


>gi|325983042|ref|YP_004295444.1| integrase family protein [Nitrosomonas sp. AL212]
 gi|325532561|gb|ADZ27282.1| integrase family protein [Nitrosomonas sp. AL212]
          Length = 216

 Score = 82.8 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 32/203 (15%), Positives = 62/203 (30%), Gaps = 16/203 (7%)

Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRC 206
           A+  E++   P   +   K     IR    E +Q   +   E     + F     +GLR 
Sbjct: 12  ALDWEWIEKAPF--IRLYKEPKRRIRWIAPEQVQILLNELPEHLVDLVKFSLS--TGLRK 67

Query: 207 SDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ 262
            +        +              K    I + L    M++L                +
Sbjct: 68  RNVTDLEWSQVDLQRNVAWIHADQAKARKSIHISLNATAMEVLRKQVGKHSLRVFTYQGK 127

Query: 263 KMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
            +       W +    +AG+ +   H +R   A+     G   + +     W++ +  + 
Sbjct: 128 PIIQVNTRAW-RKALRRAGIEDFRWHDLRHTWASWLTQKGVPLNVIQEMGAWESTEMVKR 186

Query: 322 YTKGADRIRLGIKNSRRISSVVD 344
           Y        L  +  R+ + VVD
Sbjct: 187 YAH------LAPEQLRKHAMVVD 203


>gi|242239786|ref|YP_002987967.1| integrase family protein [Dickeya dadantii Ech703]
 gi|242131843|gb|ACS86145.1| integrase family protein [Dickeya dadantii Ech703]
          Length = 416

 Score = 82.8 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 39/274 (14%), Positives = 91/274 (33%), Gaps = 20/274 (7%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH 128
           T   + +++ +      LA N+        +  +     +    ++T +H  + +E  + 
Sbjct: 106 TFAKVAADWYEVKKSQPLAANTIKDIWRSLEKYVFPFIANQPISQLTARHFITALEPIQA 165

Query: 129 TPS--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP---KRKTEGIRPWTKE--DMQQ 181
           +    +  +    +  +  +AV    +  NP   + +      KT       +    + +
Sbjct: 166 SGKLETVKRVSQRINEVMDYAVNSGLIPANPAAKIRKAFQTPVKTHMPTIRPEALPSLMK 225

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIITVEL 237
             S  S   Q RL  E+ L +  R +++       +     +        K      + L
Sbjct: 226 TLSVASIELQTRLLIEWQLLTVARPAEAAETRWSEIDLTQNTWTIPAGRMKMRREHVIPL 285

Query: 238 PDGFMKLLAMTPI---GKETFFINN--DKQKMNATQFSIWFKAKATKAGVNKSAHGVRKF 292
               + +L         +E  F +    KQ MN+   +   +    K  +   +HG+R  
Sbjct: 286 LPQALAILDAMKPISGHREYLFPSAKDPKQPMNSQTANAALRRMGYKGVL--VSHGLRAI 343

Query: 293 SATISADAGATAHELMATYGWKTVDQAET-YTKG 325
            +T + +AG     + A       ++    Y + 
Sbjct: 344 FSTAANEAGFPPDVIEAALAHVDTNEVRRAYNRS 377


>gi|254427016|ref|ZP_05040723.1| integron integrase subfamily [Alcanivorax sp. DG881]
 gi|196193185|gb|EDX88144.1| integron integrase subfamily [Alcanivorax sp. DG881]
          Length = 328

 Score = 82.8 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 54/313 (17%), Positives = 103/313 (32%), Gaps = 59/313 (18%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----SRKHT 129
           L+ ++R        +  +  ++  +  + IR +       +  K I++ +      R  +
Sbjct: 15  LMDQFRFWLRQNQYSYRTEQTYVLWVVRYIRYNQLRHPSTMGAKEIQAFLSYMSVQRHCS 74

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
           PS+    L ++   ++  ++Q+Y  +N      + KRK      +++++ Q   +  SE 
Sbjct: 75  PSTQKIVLNALNCFYRRFLQQDYGELN----FRQSKRKPRIPAVFSEQEAQAVIALLSEP 130

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN--IFSIKTQKTGTIITVELPDGFMKLLAM 247
           SQ  L  E L  +GLR S++ R  ++ L  +  I ++   K        LP    + L  
Sbjct: 131 SQ--LICELLYGAGLRVSEALRIRIKDLDFDRMIITVHQGKGDKDRRTLLPKSCEERLRQ 188

Query: 248 TPIGKETFFINNDKQKMNAT--------------QFSIW--------------------- 272
                   +  + K  +                    IW                     
Sbjct: 189 QIAIASNLYEMDRKNGVGPAWMPHALSRKYSGAGSQRIWQFIFPSKEPARDPETGIIRRH 248

Query: 273 ----------FKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
                      K  A +A + K    H  R   AT   + G     +    G   V   E
Sbjct: 249 HYHQDNVRKHVKQAAAEAEITKLCGPHTFRHSFATHLLEKGYDIRTVQELLGHSDVSTTE 308

Query: 321 TYTKGADRIRLGI 333
            Y    +R  LG+
Sbjct: 309 RYLHVMNRGGLGV 321


>gi|315154155|gb|EFT98171.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0031]
          Length = 393

 Score = 82.8 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 51/324 (15%), Positives = 99/324 (30%), Gaps = 60/324 (18%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132
           WL  EY+K+    +     R   +     I+   G     ++T K ++  V         
Sbjct: 77  WL-DEYKKTVRESTFIATERRMKK----HILPTFGKMRLERLTVKIVQKSVNEWYKKNEM 131

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR-----KTEGIRPWTKEDMQQFKSFWS 187
               L+    +  +AV  E +  NP   + +P       K    + +TK++++ F +   
Sbjct: 132 GKVLLSYASRVCDYAVGLEIIDSNPFKKITKPSSLKKLEKNTKRKFYTKDELEHFLNTAD 191

Query: 188 EGSQPR---------------LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT--- 229
             +                    F  L ++G+R  ++       +      +   KT   
Sbjct: 192 SIAHQAKEESLVLKYYADLDCAIFRLLSFTGIRVGEALALNWNDIDIKEQVVNINKTTAI 251

Query: 230 ---GTIITVELPD----------------------GFMKLLAMTPIGKETFFINNDKQKM 264
              G  I                                L+       +  F   D    
Sbjct: 252 STNGLTINDPKTPNSIRKISFDNKTAYILKKWKLRQREALMKKGGFKTQLIFTKIDGTMF 311

Query: 265 NATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADA-GATAHELMATYGWKTVDQA-E 320
            +       K  A KA ++ S   HG R   AT+  ++    +  +    G  ++    +
Sbjct: 312 RSQDIYQRSKRLAEKANLH-SIGCHGFRHTHATLLFESDNVRSKIIQERLGHSSLQITMD 370

Query: 321 TYTKGADRIRLGIKNSRRISSVVD 344
           TYT  +D   +  + +   SS V+
Sbjct: 371 TYTHVSD--EVTKEATDAFSSYVN 392


>gi|307691976|ref|ZP_07634213.1| integrase family protein [Ruminococcaceae bacterium D16]
          Length = 322

 Score = 82.8 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 42/284 (14%), Positives = 82/284 (28%), Gaps = 33/284 (11%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRK- 127
           TL+  I  +++          +  +    F + I+   G+    ++T + +   +E R+ 
Sbjct: 2   TLREYILRWQEVYDKNQSRPTTYAAHGYIFKNHILPGLGEIPLSELTVEQVGDFLEERRR 61

Query: 128 ---HTPSSA----------IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
              H P S                 ++     A+R   +A NP      PK K       
Sbjct: 62  FGGHRPESPEYPGLGEHTMRHIHRLLQQCLDQAIRDGLIADNPARKFHYPKSKKVSANVL 121

Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKT---- 229
           T  +++ +             F   L +GLR  +        L     ++  T+K     
Sbjct: 122 TPAEVEDYLDAAERLGH-LPMFLLALTAGLRQGELIALKWSDLDTKERTLTITEKRSVER 180

Query: 230 -------GTIITVELPDGFMKLLAMTPIGKE----TFFINNDKQKMNATQFSIWFKAKAT 278
                  G    V L    ++LL +           F     ++  +             
Sbjct: 181 RELVEYEGGTRIVSLTPEAVELLRLEHAKHPGSPLMFMHPATQRPYSPQMVRRLHNEIIK 240

Query: 279 KAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
           +A ++      +R   A +S   G    E+    G         
Sbjct: 241 EARLDHIRFADLRHTCAVLSLQNGMDTKEVSQMLGHFRTAMTRQ 284


>gi|260856764|ref|YP_003230655.1| putative integrase [Escherichia coli O26:H11 str. 11368]
 gi|257755413|dbj|BAI26915.1| putative integrase [Escherichia coli O26:H11 str. 11368]
          Length = 391

 Score = 82.8 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 55/293 (18%), Positives = 87/293 (29%), Gaps = 35/293 (11%)

Query: 57  KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT 116
           K+  +    KK   +K  + EY K     +L+ ++   +E     +          ++T 
Sbjct: 80  KKLELFGVVKKTKNIKSYLDEYLKICINRNLSPSTIGGYEKCLSALSELH-KLHVTELTP 138

Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE---------RPKRK 167
             +++ + SRK    +    L+ +R     AV    + INP   V           P   
Sbjct: 139 AILKNWIASRKTKLKTIRNNLSFLRSAIDEAVTDGLLTINPVTLVSASRYHVIDSSPSAD 198

Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-------- 219
              + P+T  +               L F F   +GLR S+ C      L          
Sbjct: 199 DYEVDPFTPAETLAIYQSCRYREWENL-FRFAFNTGLRSSELCALRWADLDTIANTAHVQ 257

Query: 220 -----NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET---FFIN--NDKQKMNATQF 269
                 +      K GT   VEL    +  L            F  +     +       
Sbjct: 258 AASVVGVLKGTKTKAGTR-KVELNSEALAALQAQKQYTFMKSEFIFSDPKTGEPWT-NAD 315

Query: 270 SIWFKAKA---TKAGVNKS-AHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           +I  KA      KAGV     +  R   AT     G     L    G K  + 
Sbjct: 316 AIRKKAWVPTLKKAGVRYRNPYQTRHTFATRHISQGVNLFWLAGQMGHKGPEM 368


>gi|26247269|ref|NP_753309.1| prophage lambda integrase [Escherichia coli CFT073]
 gi|26107670|gb|AAN79869.1|AE016759_143 Prophage lambda integrase [Escherichia coli CFT073]
          Length = 372

 Score = 82.8 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 60/355 (16%), Positives = 113/355 (31%), Gaps = 42/355 (11%)

Query: 17  RHGKIIYYFRKG-HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT----- 70
           R G++ Y ++    G+   L          A  +    +  + EY      +  +     
Sbjct: 22  RTGRVYYQYKNPVTGKFHGLGTDKGKAEKIASTANQRIAAAEAEYFMRKIDESPSATKRR 81

Query: 71  ---LKWLISEYRKSAHWG----SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
              LK  +  Y K          +A  +          ++ + G+   +++  +     +
Sbjct: 82  GIRLKAWVDRYLKIQDTRLKNGDIAATTHKEKTRMAAYLVSRLGNHPLKELEVRDFALIL 141

Query: 124 ESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAI--NPCLSVERPKRKTEGIRPWTKEDM 179
           +    K   S+A         ++K A     V    NP  +  +P  K    R  T ED 
Sbjct: 142 DEWLDKDMVSTARVNRGLWVDIYKEAQHAGEVPPGWNPPEATRKPIPKVTRAR-LTMEDW 200

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239
           Q+  +   E    R A    + +G R  D C      + N    I   KTG  + + L  
Sbjct: 201 QKIYNATPEKHFIRNAMLLAIVTGQRRDDICHMRFSDVWNEHLHITQGKTGMRLALPLTL 260

Query: 240 G-------FMKLLA-MTPIGKETFFINNDK----QKMNATQFSIWFKAKATKAGV----- 282
                     +++          + I++      + M+    S +F      AG+     
Sbjct: 261 RCDAIGITLKEVIDGCRDRILSPYLIHSRHQKQPKPMSKDNLSDYFAKARDLAGIIPPAG 320

Query: 283 --NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY--TKGADRIRLGI 333
             + + H  R  S  +    G     L    G K     + Y  T+G + ++L I
Sbjct: 321 KTSPTFHEQRSLSERLYRAQGIDTKTL---LGHKVQATTDRYNDTRGQEWVKLVI 372


>gi|83949605|ref|ZP_00958338.1| Phage integrase [Roseovarius nubinhibens ISM]
 gi|83837504|gb|EAP76800.1| Phage integrase [Roseovarius nubinhibens ISM]
          Length = 412

 Score = 82.8 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 40/268 (14%), Positives = 85/268 (31%), Gaps = 22/268 (8%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY--RKITTKHIRSGVESRKH 128
           L   I E+  +         +     S   + +          +    +           
Sbjct: 124 LGDWIDEWLATLDNV---PKTIDMKRSDVLRFVEAFPYSHLVKKAEVRRWAYETQHRENL 180

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYV--AINP-CLSVERPKRKTEGIRP-----WTKEDMQ 180
            P++  + +T  R  +++  R+ YV    +P   +VER + +T+         +++ED+ 
Sbjct: 181 KPATVRRIITHCRGYWRYLQRKAYVTGEDDPFADAVERKRSRTKARVEEARGDFSREDVV 240

Query: 181 QFKSFWSEGSQPRLA--FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-ITVEL 237
           +  +        +L       +++G R  + C   +  ++N+   I   K+      + +
Sbjct: 241 KLLAAAKALPDQQLHDLITIGMWTGCRIEEICSLKLSEVKNDRLLITDAKSSAGNRVIPI 300

Query: 238 PDGFMKLLAMTPIG--KETFF--INNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRK 291
                  L               +  +K    +      F    TK G   S   H VRK
Sbjct: 301 HPQLAPTLQRLRRDSSDGYVLSGLTFNKYGDRSNAVGKRFSRLKTKMGFGGSYVFHSVRK 360

Query: 292 FSATISADAGATAHELMATYGWKTVDQA 319
             AT+  +AG   +      G +     
Sbjct: 361 TVATLLENAGVPENIAADILGHEKQTMT 388


>gi|328913318|gb|AEB64914.1| Tyrosine recombinase xerC [Bacillus amyloliquefaciens LL3]
          Length = 385

 Score = 82.8 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 47/358 (13%), Positives = 109/358 (30%), Gaps = 51/358 (14%)

Query: 18  HGKIIYYFRKGHGRRIRLPYPHESTFI--PAYMSALTGSTPKREYINSPRKKPTTLKWLI 75
           +G   Y  R       +     +  F        A        EY         ++K   
Sbjct: 9   NGTWEYRIRYKDKSSNKYKETSKRGFKTKKEAQLAAAQIETDIEYYGFANDGKESIKEYF 68

Query: 76  SEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRK--HTPSS 132
           S++ +     ++   +    E      I+ + G+   + ++    +  +   +  ++  +
Sbjct: 69  SKWLEVYKKPNVKPITYSLQERNVRLNILPRWGEVKLKDVSRTEYQKWINELRFNYSEGT 128

Query: 133 AIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPK--RKTEGIRPWTKEDMQQFKSFWSEG 189
             +  + M      AV +   +  NP   ++ PK  +  + I+ +T + +++F +   E 
Sbjct: 129 VRRIHSLMNTALNDAVHEFRILRENPVTRIKIPKETKNNKEIKFFTVDQLEKFLNQVKEP 188

Query: 190 SQP---------RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT----------- 229
            +           + F  +  +GLR  ++       +     +IK  KT           
Sbjct: 189 QKNSKYKHSIQYYVLFSLMARTGLRIGEALALTWNDIDFEECTIKVNKTLVYPTNSTPYL 248

Query: 230 ---------------------GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ 268
                                     +   +  +K         +  F  +D + +    
Sbjct: 249 STPKSKAGLRIIKLDIHTVQLLKKHRINRKEVVLKYKNYKKPEDDIVFYQHDGRWLRTNV 308

Query: 269 FSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTK 324
              +FK    +A +   S H +R   A    +A A    +    G  ++   A+TY  
Sbjct: 309 VREYFKEICKRAELPILSPHALRHSHAVHLIEAKADLKFVSERLGHSSIKITADTYLH 366


>gi|238894186|ref|YP_002918920.1| prophage lambda integrase [Klebsiella pneumoniae NTUH-K2044]
 gi|238546502|dbj|BAH62853.1| prophage lambda integrase [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
          Length = 380

 Score = 82.8 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 59/359 (16%), Positives = 114/359 (31%), Gaps = 52/359 (14%)

Query: 9   PFVTKERT-RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTP----------K 57
           P +  +   R GK+ + ++     R       E+        A T              +
Sbjct: 13  PNLYCKLDKRTGKVYWQYKHPISGRFHSLGTDEAEAKQVASEANTIIAEQRTRQILGINE 72

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHWG----SLAVNSRISFESYFDQIIRKSGDFDYRK 113
           R       +   T+   + +Y            L  NS               G    + 
Sbjct: 73  RLARMKGNRTDITVSSWLDKYELVQEERLKHNELRPNSFRQKAKPIRLFREHCGMQYLKD 132

Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMRVL----FKWAVRQEYVAI--NPCLSVERPKRK 167
           IT   I    ++ K       +    +R++    FK A    +V    NP  + ++P+ K
Sbjct: 133 ITALDISEITDAVKAEGH--NRMAQVVRMVLIDVFKEAQHAGHVPPGYNPAQATKQPRNK 190

Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSIK 225
               +  + E+ +   +   +  QP L    LL   +G R  D C      + +++  I+
Sbjct: 191 -ISRQRLSLEEWEAIYTSAEQ-QQPYLQCGMLLAIVTGQRLGDICNMRFSDVWDDMLHIE 248

Query: 226 TQKTGTIITVEL---PDGFMKLLAMTPIGKETFFINN-------------DKQKMNATQF 269
            +KTGT + + L    +     L+          ++                 +++A   
Sbjct: 249 QEKTGTRLAIPLSLRNEALNITLSDVISKCRDAVVSKYLVHFRHSTSQASRGDQVSAKTL 308

Query: 270 SIWFKAKATKAGVNK------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           +  FK    K+G+        + H  R  S  +  + G    +L    G KT+   + Y
Sbjct: 309 TSTFKKARDKSGLTWEEGTAPTFHEQRSLSERLYREQGIDTQKL---LGHKTMKMTDRY 364


>gi|284040997|ref|YP_003390927.1| integrase family protein [Spirosoma linguale DSM 74]
 gi|283820290|gb|ADB42128.1| integrase family protein [Spirosoma linguale DSM 74]
          Length = 411

 Score = 82.8 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 49/249 (19%), Positives = 91/249 (36%), Gaps = 32/249 (12%)

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI--NPCLSVERPKRKTEGIRPWTKED 178
             ++ R ++ ++A   LT +R +   A+    +    NP L  +  + K E IR  T+ +
Sbjct: 163 WLMKVRGNSLNTANTGLTKLRTVISKAIEAGLLKRQDNPFLGFKIKEAKLERIR-LTETE 221

Query: 179 MQQFKSF-WSEGS---QPRLAFEFLLYS-GLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233
           +Q F S    EGS     R  + F  Y  G+R SD      Q++     S   +KT  II
Sbjct: 222 LQAFTSVDLPEGSLLWHTRNYWLFAFYCAGIRFSDVACLKWQNINGGRLSYVMRKTQHII 281

Query: 234 ----TVELPDGFMKLLAM-----TPIGKETFFINNDKQKMNATQ------------FSIW 272
               +++LP     +L              F I +  +  ++               + +
Sbjct: 282 QQSHSIQLPKQAEAILCHYAKPDAKPDDFIFPIVSSGRDYSSPADLLREISRKNALINKY 341

Query: 273 FKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
            K   ++AG+ K  S H  R   A +        + +        ++  E Y    D   
Sbjct: 342 LKLVCSRAGIAKAVSFHSARHTFADLGRRKIKDVYAISKLLRHSKINITEKYLADFD-SE 400

Query: 331 LGIKNSRRI 339
           +  +   ++
Sbjct: 401 ITDQALDKL 409


>gi|300940995|ref|ZP_07155519.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 21-1]
 gi|300454319|gb|EFK17812.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 21-1]
          Length = 395

 Score = 82.8 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 55/342 (16%), Positives = 117/342 (34%), Gaps = 39/342 (11%)

Query: 19  GKIIYYFRK-----------GHGRRIRLPYPHESTFIPAYMSALT-GSTPKREYINSPRK 66
           GK ++ FR            G G    L           Y++ L  G  P+ +   +  +
Sbjct: 39  GKKLWRFRYQRPATKQRTMMGLGAFPALSLADARGLRADYLALLANGIDPQIQAEVAEEQ 98

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNS------RISFESYFDQIIRKSGDFDYRKITTKHIR 120
           +   L  + S    +A+W  L   S      +  + S    +    G+   ++I  + + 
Sbjct: 99  QQIALDSIFS--MVAANWFQLKSKSVTPDYAKDIWRSLEKDVFPAIGEIPVQQIKARILV 156

Query: 121 SGVESRKHTPS--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP--KRKTEGIRPWTK 176
             +E  K   +  +  + +  +  +  +AV    +  NP   +     K K + +     
Sbjct: 157 EALEPIKARGALETVRRLVQRINEIMIYAVNTGLIDANPASGIGMAFEKPKKQNMPTLRP 216

Query: 177 EDMQQFKSFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKT 229
           E++ +        +     R   E+ L + +R S++  A    +  +           K 
Sbjct: 217 EELPKLMRSLVMSNLSVPTRCLIEWQLLTLVRPSEASGARWAEIDLDTKLWTIPAERMKA 276

Query: 230 GTIITVELPDGFMKLLAMTP---IGKETFFI--NNDKQKMNATQFSIWFKAKATKAGVNK 284
                V L    +++L +       +E  F   N+ KQ MN+   +   K      G   
Sbjct: 277 KREHIVPLSPQALEILDVMKPISAHREHVFPSRNDPKQPMNSQTANAALKRIGY--GGKL 334

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAET-YTKG 325
            AHG+R  ++T   ++G  +  + +       ++    Y + 
Sbjct: 335 VAHGLRSIASTALNESGFNSDIIESALAHIDKNEVRRAYNRS 376


>gi|323525384|ref|YP_004227537.1| integrase family protein [Burkholderia sp. CCGE1001]
 gi|323382386|gb|ADX54477.1| integrase family protein [Burkholderia sp. CCGE1001]
          Length = 425

 Score = 82.8 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 44/305 (14%), Positives = 92/305 (30%), Gaps = 24/305 (7%)

Query: 53  GSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYR 112
           G+ P  E      +K  T++ L+S+YR+     +L ++++ S+     +     G    R
Sbjct: 84  GNNPATEKRKDKSRKNWTVRQLVSDYRE-KVLVNLGLSTQRSYGRNLKRTENALGAMQVR 142

Query: 113 KITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
           ++    I   +E  K     A   L   + +F+ A  ++ +  NP + VE          
Sbjct: 143 EVEAADIVGLIERAKLGWVEANTLLIVAKAIFRHAAGKKVINANPAIGVELVSIIGPRPP 202

Query: 173 PWTKEDMQ----QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKT 226
              +  +               +  L+   LL +G+R  D  +    ++      + I  
Sbjct: 203 IRQRLMLACNELHVLLNADMNRENLLSVSILLATGVRSEDLYKGLRTNVFLDEARWHIPG 262

Query: 227 QKTGTIITVELPDGFMKL---LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
            KTGT + + L    +     L                 +             A +  ++
Sbjct: 263 SKTGTAMDIPLAPVVVDWFRELLALNTRSRYILPTRAASRAARHGGDAHLSKDAIREAID 322

Query: 284 K------------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA--DRI 329
                        + H +R    +       +          K       Y +       
Sbjct: 323 YWIDNYKPSIRRFTPHDLRSTMKSHMRKLRISRDVSEMCLNHKLPGVEGIYDQYTYYGER 382

Query: 330 RLGIK 334
           RL ++
Sbjct: 383 RLALE 387


>gi|257870780|ref|ZP_05650433.1| phage integrase [Enterococcus gallinarum EG2]
 gi|257804944|gb|EEV33766.1| phage integrase [Enterococcus gallinarum EG2]
          Length = 380

 Score = 82.8 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 50/267 (18%), Positives = 90/267 (33%), Gaps = 45/267 (16%)

Query: 100 DQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL 159
           + I+   G+    KI+  + +  V     T         +   +FK+ V  E    NP  
Sbjct: 98  NHILPAFGELRLDKISVSYCQKQVNEWHKTLKQYGFLRKTTAQIFKFGVAMEVCKDNPMS 157

Query: 160 SVERPKRKTEGIRPW---TKEDMQQFKSFWSEGSQPRLA--FEFLLYSGLRCSDSCRAGV 214
                 RK E  +P    TK+ +Q F     E +  +L   F  L Y+G+R S++     
Sbjct: 158 K-TLLPRKIEEEQPLKFYTKDQLQLFLKNTKENNSVKLYTFFRLLAYTGMRKSEALGLQW 216

Query: 215 QHLQNNIFSIKTQKT-----------------GTIITVELPDGFMKLLAMTP-------- 249
           + +     +I   KT                  +  T++L D  +K L +          
Sbjct: 217 EDIDYFNKTITIGKTIAQDEFNQVVLQVPKTKNSSRTIQLDDFTLKQLRIWQQEQMKIMI 276

Query: 250 -------IGKETFFINNDKQKMNATQFSIW----FKAKATKAGVNKSAHGVRKFSATISA 298
                    K+  F  N  +       + W    +K    +  +  + HG R    ++  
Sbjct: 277 LYGYNTNSPKQFLFTTNTNKLYYPQVVNDWLDWIYKKTPMEPQI--TPHGFRHTHCSLLF 334

Query: 299 DAGATAHELMATYGWKTVDQAE-TYTK 324
           ++GA+  E+    G K +      Y  
Sbjct: 335 ESGASIKEVQERLGHKDIKTTMNIYAH 361


>gi|153808173|ref|ZP_01960841.1| hypothetical protein BACCAC_02459 [Bacteroides caccae ATCC 43185]
 gi|149129076|gb|EDM20292.1| hypothetical protein BACCAC_02459 [Bacteroides caccae ATCC 43185]
          Length = 267

 Score = 82.8 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 44/282 (15%), Positives = 94/282 (33%), Gaps = 27/282 (9%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           ++++++      +LA N+  S+       +   G+ + R +       G       P + 
Sbjct: 1   MVTKFKNHLAKTNLARNTVTSYVWTVQYFLNHYGEVNKRNLLA---YKGYLVENFKPQTV 57

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI--RPWTKEDMQQFKSFWSEGSQ 191
              L  +    ++  +++         V+  K + +       +  D +  K+       
Sbjct: 58  NLRLQGINQYLEFTKQEKL-------KVKFVKVQQKNFLENVISDADYKFLKAQLKADGY 110

Query: 192 PRLAFE--FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM----KLL 245
               F   F+  +G R S+      +H++     +   K G I  + +P        K L
Sbjct: 111 DEWYFVVWFMAATGARVSELLHIKAEHIKVGYLDLY-SKGGKIRRLYIPKNLRTEAEKWL 169

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGA 302
               +     F+N   Q++     +   K  A K G+NK     H  R   A    D   
Sbjct: 170 KNKGLTSGYIFLNRFGQRITTRGIASQLKHFAEKYGMNKDVVYPHSFRHRFAKNFLDRFN 229

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
               L    G ++++    Y +     R   +  + +  VV+
Sbjct: 230 DLALLADLMGHESIETTRIYLR-----RTASEQQKIVDKVVN 266


>gi|13509250|emb|CAC35342.1| integrase [Vibrio salmonicida]
          Length = 320

 Score = 82.8 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 44/300 (14%), Positives = 89/300 (29%), Gaps = 63/300 (21%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA----IQFLTSM 140
              A ++  ++  +    IR +       +    +   +    ++ + A     Q L ++
Sbjct: 16  KRYAKSTIEAYLFWIAAYIRFNNMQHPSSMGDTQVELYLNHLVNSQNVAQGTQAQALNAL 75

Query: 141 RVLFKWAVRQEYVAINPCLSVERPK--RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEF 198
             L+K     E +     LS++  K  R  +     T+ ++          ++  LA   
Sbjct: 76  SFLYK-----EIIKSPLSLSLDFVKSERPRKLPVVLTQTEVSALFKHCI--TKHYLACAL 128

Query: 199 LLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFF 256
           L  SG+R  +  R  +Q +  +     I   K G    V L    +  +       + + 
Sbjct: 129 LYGSGMRLMEVLRLRIQDIDFDYNCVRIWDGKGGKNRVVTLAGELIPQIRTQIQLVDNYL 188

Query: 257 ---INN-------------------------------------------DKQKMNATQFS 270
              +NN                                            +  ++  Q  
Sbjct: 189 QLDLNNPLFCGVYMPHLLRKKYPNHNKQLGWQYLFPSYKLSIDPESKQLRRHHIDEKQLQ 248

Query: 271 IWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
              K  A  A +NK  + H +R   AT    +GA    +    G   +   + YT    +
Sbjct: 249 RAVKKAAFNAHINKHVTPHTLRHSFATHLLQSGADIRTVQTQLGHSDIRTTQIYTHVLQQ 308


>gi|315925038|ref|ZP_07921255.1| putative phage integrase [Pseudoramibacter alactolyticus ATCC
           23263]
 gi|315621937|gb|EFV01901.1| putative phage integrase [Pseudoramibacter alactolyticus ATCC
           23263]
          Length = 361

 Score = 82.8 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 42/294 (14%), Positives = 91/294 (30%), Gaps = 30/294 (10%)

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNS-RISFESYFDQIIRKSGDFDYRKITTKHI 119
            +    K  +    +  +       +++  + + ++     ++ +K      +       
Sbjct: 55  ADPTPAKKYSFVDWMDRWLADYKEPNVSDQTYQRTYLPIRRELAKKFPRRQLQSFQPAEW 114

Query: 120 RSGVESRKHTPSSA-IQFLTSMRVLFKWAVRQEYVAINPCLSVERPK-RKTEGIRPWTKE 177
           +    +      S   +    +  LF+ AV  + +  +P   V  P     +  R +  +
Sbjct: 115 QHYFNAAAFRSGSYLNKRKMFLTGLFQAAVDNDLIDKSPMRGVIVPNGAPAKEKRAYNHD 174

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---------------NNIF 222
             ++  +F          F  L Y GLR S+      + +                + I 
Sbjct: 175 QYEKVLAFARSDPDGLGPFIMLKY-GLRRSELLGLMWKDIDFTEKTLHIERAVRMDHGIA 233

Query: 223 SIKTQKTG-TIITVELPDGFMKLLAMTPIGKETFF--INNDKQKMNATQFSI-WFKAKAT 278
            +   KT  +  T+ L D F++ L M P           +  +  N   ++   F A   
Sbjct: 234 ELGPTKTKRSNRTLPLDDDFIEHLKMVPRSSIYVMGAFGDGNKPRNPDTWARERFGAYCA 293

Query: 279 KA-----GVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKG 325
           +       +   S H +R    +I  +AG     +    G   +D    TY   
Sbjct: 294 RLTDALPDIPVLSPHELRHTFGSILYNAGVDIVTISRMMGHSKIDVTVNTYVHS 347


>gi|291087774|ref|ZP_06347445.2| site-specific DNA tyrosine recombinase, XerD [Clostridium sp.
           M62/1]
 gi|291073872|gb|EFE11236.1| site-specific DNA tyrosine recombinase, XerD [Clostridium sp.
           M62/1]
          Length = 286

 Score = 82.8 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 34/263 (12%), Positives = 80/263 (30%), Gaps = 24/263 (9%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
           +  YR        + ++   +        +   +          +       K+  SSA 
Sbjct: 16  MEAYRIYLMESEKSPSTIEKYLRDIRNFYQFLPEEKIIDREAVLLYKRQLIPKYQISSAN 75

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR- 193
             + ++     +   +E         V+  K +   +    + ++Q+ +         R 
Sbjct: 76  SMIIAVNGFLSFMGLEELR-------VKVFKFQ-RAMVSDPEREIQREEYIRLVEEAERM 127

Query: 194 ------LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
                 L  + L  +G+R S+      + + +   ++     G +  V LP    + + +
Sbjct: 128 GKSRLSLILQTLGATGIRISELVCITREAVSSGRAAVNL--KGKMRVVILPKRLREKMEI 185

Query: 248 TPIGKE----TFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADA 300
                +      F+    + ++ +      K     AG+N+     H +R   A I    
Sbjct: 186 YCRENQIYSGPVFVTRGGKPVDRSNIWSEMKILCKTAGINEKKIFPHNLRHLFARIYYKN 245

Query: 301 GATAHELMATYGWKTVDQAETYT 323
                 L    G  +V+    YT
Sbjct: 246 NHDIVYLADILGHSSVETTRIYT 268


>gi|218547860|ref|YP_002381651.1| phage integrase [Escherichia fergusonii ATCC 35469]
 gi|218355401|emb|CAQ88010.1| phage integrase [Escherichia fergusonii ATCC 35469]
          Length = 399

 Score = 82.8 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 50/341 (14%), Positives = 113/341 (33%), Gaps = 35/341 (10%)

Query: 18  HGKIIYYFR-----------KGHGRRIRLPYPHESTFIPAYMSALTGST-----PKREYI 61
           +G+ ++ FR            G G    L           Y+S L          ++  +
Sbjct: 38  NGRKLWRFRYQKPVTKQRTMIGLGSFPALSLAEARNTRAEYLSLLARGIDPQIYSEQVTV 97

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121
                + +    + S++            ++  + S    I    G+   +KI  + +  
Sbjct: 98  QQQIAEDSIFSNVASKWFAIKRNNVTPDYAKDVWRSLERDIFPTIGEIPVQKIKARTLIE 157

Query: 122 GVESRKHTPS--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP--KRKTEGIRPWTKE 177
            +E  K   +  +  + +  +  +  +AV    +  NP   +     K K + +     E
Sbjct: 158 TLEPIKARGALETVRRLVQRINEIMIYAVNTGLIDANPASGIGMAFEKPKKKNMPTLRPE 217

Query: 178 DMQQF---KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKTG 230
           ++ +     S  +   Q R   E+ L + +R S++     + +  +    +      K  
Sbjct: 218 ELPKLMYSLSMSNLSVQTRCLIEWQLLTLVRPSEASGTQWKEIDFDAKLWRIPAERMKAK 277

Query: 231 TIITVELPDGFMKLLAMTPI---GKETFFI--NNDKQKMNATQFSIWFKAKATKAGVNKS 285
               V L    + +L +       +E  F   N+ ++ MN+   +   K      G    
Sbjct: 278 REHIVPLSPKALDILEVMKTISAHREYVFPSRNDPQKPMNSQTANAALKRIGY--GGKLV 335

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAET-YTKG 325
           AHG+R  ++T   +A   A  + +       ++    Y + 
Sbjct: 336 AHGLRSIASTAMNEAEFNADVIESALAHSDKNEVRKAYNRS 376


>gi|254441599|ref|ZP_05055092.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
 gi|198251677|gb|EDY75992.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
          Length = 433

 Score = 82.8 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 55/326 (16%), Positives = 111/326 (34%), Gaps = 41/326 (12%)

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121
              RK   T+  L S++    H   L  + +         +++  G      +  + +  
Sbjct: 95  KRTRKIEPTVADLASDWL-DVHATGLK-SEQAIRSLIGGDLVKALGKMKVTDVRRRDVIE 152

Query: 122 GVESRKHT-PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG---------- 170
            VE++  T P  A   L+  R+L  +A  ++ V  NP   ++    K  G          
Sbjct: 153 AVEAKAATAPRQAALMLSYARMLLDYATDRDIVRANPVAGLKPGSIKVAGKRDPLKPVVR 212

Query: 171 IRPWTKEDMQQFKSF---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI--- 224
           +R    E+++   +            LA + +L +G R  +      + +   +++I   
Sbjct: 213 LRVLDAEEIKSMWANVESCGLHLLTGLALKLVLVTGQRPGEVAGMHEKEISGRLWTIPAS 272

Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIG------------KETFFINNDKQKMNATQF--S 270
           +  KT T  TV L D  + ++A+                    F ++    +        
Sbjct: 273 RRGKTSTAQTVYLTDTALDIIAVAKAELQRLQGRRKGAPSGYIFESSYGLPITNAALPRG 332

Query: 271 IWFKAKATKAGVN-----KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY--- 322
           +    +A  A  +      + H +R+   T  + +    H    T G        TY   
Sbjct: 333 VQRSHEALGAKDDEAWGRWTPHDLRRTMRTGLSASKVAPHIAELTIGHTKRGIVATYDQH 392

Query: 323 TKGADRIRLGIKNSRRISSVVDSDDP 348
           T  ++R    +    R+ ++V   DP
Sbjct: 393 TFDSERRDAMMAWEARLLAIVAGRDP 418


>gi|114320950|ref|YP_742633.1| integron integrase [Alkalilimnicola ehrlichii MLHE-1]
 gi|114227344|gb|ABI57143.1| integron integrase [Alkalilimnicola ehrlichii MLHE-1]
          Length = 462

 Score = 82.8 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 39/305 (12%), Positives = 87/305 (28%), Gaps = 58/305 (19%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132
            L   + ++     LA+++  ++ ++  + I               ++  +       + 
Sbjct: 147 ALFEAFSETVTSRGLAISTEKTYLAWTCRFIVFLQSKPVESADEADVQQFLSQLVTQRNV 206

Query: 133 A----IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           A     Q L ++   F++ +++    +    ++ER KR        ++ +++   S    
Sbjct: 207 AASTQSQALNALVFFFRYVLQRPLGEL---QAIERSKRPRRLPVVLSRNEVKALLS--EM 261

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPD----GFM 242
                L    L  SG+R  ++ R  V+ +       ++++ K      V LP+       
Sbjct: 262 HGVHHLLASLLYGSGMRVMEALRLRVKDIDFERRAITVRSGKGDKDRVVPLPESTIAPLQ 321

Query: 243 KLLAMTPIGKETFFINNDK----------------------------------------- 261
             L       E    +                                            
Sbjct: 322 NHLRQVKAIHEGDLADGYGEASLPHALARKYRNAGKEWHWQYVFPSARVAVDPRSGAIRR 381

Query: 262 QKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQA 319
             ++ T      K     + + K A  H +R   AT   + G     +    G   V   
Sbjct: 382 HHLHETAVQRAVKRAVRASRIPKQASCHTLRHSFATHLLERGQDIRTVQELLGHADVSTT 441

Query: 320 ETYTK 324
             YT 
Sbjct: 442 MIYTH 446


>gi|320178361|gb|EFW53332.1| Integrase [Shigella boydii ATCC 9905]
          Length = 437

 Score = 82.8 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 26/233 (11%), Positives = 70/233 (30%), Gaps = 46/233 (19%)

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           +   ++T++  +F++A    Y+  NP   ++  KR      P T+++  +         Q
Sbjct: 160 TVNYYMTTIAGMFQFAADHGYIEANPFEGIKPLKRARAEPDPLTRDEFIRLIDAC-RHQQ 218

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII------------------ 233
            +  +   +Y+G+R  +      + +     +I  ++  T +                  
Sbjct: 219 TKNLWSLAVYTGMRHGELVSLAWEDIDLKAGTITIRRNYTKLGEFTLPKTEASTNRVVHL 278

Query: 234 ---TVELPDGFMKLLAMTPIGKETFFINNDKQK-----------------------MNAT 267
               + +     ++  +         +    +                            
Sbjct: 279 IQPAISVLKNQAEMTRLGKQHNIKVQLREYGRSVNHECTFVFNPQVVRKSKQVGFIYKVD 338

Query: 268 QFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
                ++    +AG+ ++ A+  R   A  S  AGA    + +  G  +    
Sbjct: 339 SIGDSWETAIKRAGIRHRKAYQSRHTYACWSLSAGANPSFIASQMGHASAQMV 391


>gi|296163768|ref|ZP_06846471.1| integrase family protein [Burkholderia sp. Ch1-1]
 gi|295885989|gb|EFG65904.1| integrase family protein [Burkholderia sp. Ch1-1]
          Length = 329

 Score = 82.8 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 44/249 (17%), Positives = 77/249 (30%), Gaps = 32/249 (12%)

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER-----PKRKTEGIRP-WTKED 178
            RK++  +    L ++  LF++A            ++ R     PKR    I    T+ +
Sbjct: 72  DRKNSVRTRNARLAAIHSLFRYAA---LRHPEHAATIARVLAILPKRFERAIVTFLTEVE 128

Query: 179 MQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTG--- 230
           +Q   +        G +        + +GLR S+        +       +  Q  G   
Sbjct: 129 VQALLAAPDRTLWSGRRDYAMLLVAVQTGLRISEVIGLLWTDVHLGAGAHVACQGKGRKD 188

Query: 231 --TIITVELPDGFMKLLA-MTPIGKETFFINNDKQKMNATQFSIWFKAKA--------TK 279
             T +TV +       LA          F       ++           A        T 
Sbjct: 189 RITPLTVPVVKVLRVWLAECEANPAARLFPTRTGTPLSRDAIERRITLHAAKASAACATL 248

Query: 280 AGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
           A  N + H +R  +A    +AG     +    G + VD    Y        LGIK     
Sbjct: 249 ANKNVTFHVLRHTAAMRLLEAGVDPTVIALWLGHEHVDTTTIYLH----AHLGIKEQALA 304

Query: 340 SSVVDSDDP 348
            + + + +P
Sbjct: 305 RARMPNANP 313


>gi|293414671|ref|ZP_06657320.1| lambdoid prophage Rac integrase [Escherichia coli B185]
 gi|291434729|gb|EFF07702.1| lambdoid prophage Rac integrase [Escherichia coli B185]
          Length = 411

 Score = 82.8 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 44/314 (14%), Positives = 87/314 (27%), Gaps = 65/314 (20%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHIRSGVE---- 124
           T   L   + K      L  N+    +S    +            I    I +       
Sbjct: 82  TFGELCDIWTKIKE-TELTTNTMKKTKSQLKTLRIIICESTPISHIRYSDILNYRNELLH 140

Query: 125 ------------SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
                        +  T  +   ++  +  L ++A +  +++  P   V++ +R      
Sbjct: 141 GETLYLDNPRSNKKGRTVRTVDNYIALLCSLLRFAYQSGFISTKPFEGVKKLQRNRIKPD 200

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
           P +K +         +G    L  +F +YSGLR  +      + +      +  ++  TI
Sbjct: 201 PLSKTEFNALMES-EKGQSQNLW-KFAVYSGLRHGELAALAWEDVDLEKGIVNVRRNLTI 258

Query: 233 ITVELPDG----------FMKLLAMTP-----IGKE-----TFFINNDKQK--------- 263
           + +  P                L          G       TF+     +          
Sbjct: 259 LDMFGPPKTNAGIRTVTLLQPALEALKEQYKLTGHHRKSEITFYHREYGRTEKQKLHFVF 318

Query: 264 ------------MNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMA 309
                        + +     + A   +AG+ +    H  R   A     AGA    + +
Sbjct: 319 MPRVCNGKQKPYYSVSSLGARWNAAVKRAGIRRRNPYHT-RHTFACWLLTAGANPAFIAS 377

Query: 310 TYGWKTVDQA-ETY 322
             G +T     E Y
Sbjct: 378 QMGHETAQMVYEIY 391


>gi|213025645|ref|ZP_03340092.1| integrase [Salmonella enterica subsp. enterica serovar Typhi str.
           404ty]
          Length = 283

 Score = 82.8 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 42/260 (16%), Positives = 83/260 (31%), Gaps = 50/260 (19%)

Query: 111 YRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170
           ++ +   H R+ V+ RK   S+   ++  M  +F++     Y   NP   + R K+    
Sbjct: 21  FQVMKKDH-RTQVKGRKS--STVNNYMMLMAEIFQFGTDNGYAKENPFSGINRLKKAKGE 77

Query: 171 IRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT- 229
             P T ++  +F        Q R  +   +Y+G+R  + C    + +  +  +I  ++  
Sbjct: 78  PDPLTTDEFIRFIQACG-HQQMRNLWSLAVYTGMRHGELCGLAWEDIDLHAGTIIVKRNL 136

Query: 230 -------------GTIITV----ELPDGFMKLLAMTPIGKE------------------T 254
                        GT   +       D       +T +G++                  T
Sbjct: 137 TQTDEFTLPKTDAGTDRVIYLIQPAIDALRNQAQLTRLGRQFEVEVKLREYGQSVIQPCT 196

Query: 255 FFIN--------NDKQKMNATQFSIWFKAKATKAGVNKS-AHGVRKFSATISADAGATAH 305
           F  +                   +  +     +AG+    A+  R   A  S  AGA  +
Sbjct: 197 FVFSPQCVKRGPRTGYHYAVNSINKIWAPIIKRAGIRYRNAYQSRHTYACWSLSAGANPN 256

Query: 306 ELMATYGWKTVDQA-ETYTK 324
            +    G        + Y K
Sbjct: 257 FIATQMGHTDAQMVYKVYGK 276


>gi|222823741|ref|YP_002575315.1| integrase/recombinase [Campylobacter lari RM2100]
 gi|222538963|gb|ACM64064.1| integrase/recombinase [Campylobacter lari RM2100]
          Length = 355

 Score = 82.8 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 28/201 (13%), Positives = 74/201 (36%), Gaps = 27/201 (13%)

Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS------QPRLAFEFLLYSGLRCSDSCR 211
              V+ P+         +++++ +F              + RL  + ++++G+R S++  
Sbjct: 159 SRGVKLPEYM-------SEDEVGKFLDAIDTIDFKNNTIRNRLIIKIIIFTGIRVSEAIN 211

Query: 212 AGVQHLQNN----IFSIKTQKTGTIITVELPDGFMKLLAMTPIG-----KETFFINNDKQ 262
             ++ +       I  I+ +     + V +    ++ L               F+N + +
Sbjct: 212 IKLKDISEENDLYIIRIRAKGNKYRV-VMIKKELIEHLLKDVRVNYLSYDGLLFVNRNGK 270

Query: 263 KMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
            +     S   +    KAG+ K    AH +R   AT+          +    G  +++ +
Sbjct: 271 ALTQAYISRIVEQILFKAGIRKQKNGAHMLRHTFATLLYKKQKDLVLVQEALGHASLNTS 330

Query: 320 ETYTKGADRI-RLGIKNSRRI 339
             YT   +   +L  + ++++
Sbjct: 331 RIYTHFDNEKLKLAAEVAKKL 351


>gi|326335397|ref|ZP_08201585.1| integrase [Capnocytophaga sp. oral taxon 338 str. F0234]
 gi|325692462|gb|EGD34413.1| integrase [Capnocytophaga sp. oral taxon 338 str. F0234]
          Length = 411

 Score = 82.4 bits (202), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 36/283 (12%), Positives = 92/283 (32%), Gaps = 34/283 (12%)

Query: 88  AVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRSG----VESRKHTPSSAIQFL 137
           +  +   +E+ +  +           D  ++++T   I         ++  T ++   ++
Sbjct: 134 SSRTLNKYENVYTHLSEFIQYKYRRSDISFKELTEDFINDFDFYLRVNKSLTHNTIWVYM 193

Query: 138 TSMRVLFKWAVRQEYVAINPCLS-VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196
             +  + + A+ +  +  NP  + +   + K  G     +E+++    +  + +   L  
Sbjct: 194 MPLCKMVEIAIDKGIIYHNPFKNYISSMEEKDRGY--LLREEVEALLQYHPKSASVELVR 251

Query: 197 EFLLY---SGLRCSDSCRAGVQHL-----QNNIFSIKTQKTGTIITVELPDGFMKLLAM- 247
           +  ++   +G    D  +    HL      N     + QK+     V L D   K++   
Sbjct: 252 DLFVFSCFTGFSYIDIKQLKRSHLQSFFDGNKWLIKRRQKSDVPCNVRLLDIAEKIIEKY 311

Query: 248 -TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV----NKSAHGVRKFSATISADAGA 302
                 E  F        + T  ++  +       +      S H  R    T+    G 
Sbjct: 312 EGTTRTEALFPT-----PSNTNCNLLIRKMMKDCNIIREKPISFHWARHTFGTLFLTEGV 366

Query: 303 TAHELMATYGWKTVDQAETYTKGADRI--RLGIKNSRRISSVV 343
               +    G K +   + Y K  +    +     + R+ ++ 
Sbjct: 367 PLESVSKMMGHKNIKTTQIYAKITNEKISKDMEIAAERLKNLK 409


>gi|308177820|ref|YP_003917226.1| putative phage integrase [Arthrobacter arilaitensis Re117]
 gi|307745283|emb|CBT76255.1| putative phage integrase [Arthrobacter arilaitensis Re117]
          Length = 371

 Score = 82.4 bits (202), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 45/289 (15%), Positives = 91/289 (31%), Gaps = 21/289 (7%)

Query: 48  MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG 107
            +    +  +     SP+   TT++     + K          S    +++  +I    G
Sbjct: 52  WAEGEAAKIRSGAYISPQDAGTTMRVWSEHWLKGYEVNR--PGSVKQAKTHVKRINAAFG 109

Query: 108 DFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP 164
           D   + I    +++ + + K+     S+       +  +   AV    +   P      P
Sbjct: 110 DMPLKDIRPTAVKNWLAALKNEGLADSTIHALYRRLAHMLSDAVEDGLLVRTPISRKIAP 169

Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
               +     T+  +        +G +         ++GLR S+     VQ +      I
Sbjct: 170 PAGKQRPYVATEAQVWALYDAMPDGMKN--VILLGAFAGLRVSEIAALRVQDVDALRGYI 227

Query: 225 KTQ--------KTG-TIITVELPDGFMKLLAMTPI--GKETFFINNDKQKMNATQFSIWF 273
                      KT  +   + +P      L   P   G ETF    + +          F
Sbjct: 228 SPVIQYPGVPLKTEESKNHIPIPRELAFELNKNPAKWGSETFVTLENGRAAAPYTIEARF 287

Query: 274 K-AKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
           + A+AT  G+ +    H +R F A+    +G    ++ A     +    
Sbjct: 288 RTARATVEGLPENFRIHDLRHFFASFLIASGEDVKKVQAAMRHASAKTT 336


>gi|240949217|ref|ZP_04753561.1| phage integrase [Actinobacillus minor NM305]
 gi|240296333|gb|EER46977.1| phage integrase [Actinobacillus minor NM305]
          Length = 309

 Score = 82.4 bits (202), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 35/277 (12%), Positives = 87/277 (31%), Gaps = 29/277 (10%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT- 129
                S++  +   G++ + +   + S    I   +       ++    +  +     T 
Sbjct: 11  FSQYFSDWVATYKEGAIRLVTMKKYRSTLHWIETLAPKLRVGDLSRITYQKLLNDYAQTH 70

Query: 130 -PSSAIQFLTSMRVLFKWAVRQEYVAINPCLS--VERPKRKTEGIRPWTKEDMQQFKSFW 186
              + + F   ++     AV +  +  +P     ++    K++ I+   + ++Q   +  
Sbjct: 71  ERQTTMDFHHQLKGAILDAVDEGLLDTDPTRKAIIKGKAPKSKKIKYLNQFELQALLNSL 130

Query: 187 SEGSQPR-LAFEFLLY-SGLRCSDSCRAGVQHLQNNIFSIKTQKTGT------------- 231
               +     F  L+  +G+R S++     +       +++  KT               
Sbjct: 131 ELEQKINWDWFILLVAKTGMRFSEALAITPEDFDFAHQTLQVNKTWNYKEKGGFSPTKNR 190

Query: 232 ------IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NK 284
                  +  +    F +L+   P  K  F  +                    KA V   
Sbjct: 191 SSIRKIQLDWQTVIQFSQLIKDLPPDKPIFPCDTAIYNSTING---MLARICRKAKVSTI 247

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
           S HG+R   A++   AG +   +    G  ++   + 
Sbjct: 248 SIHGLRHTHASLLLFAGVSIASVARRLGHSSMTTTQH 284


>gi|254503304|ref|ZP_05115455.1| site-specific recombinase, phage integrase family protein
           [Labrenzia alexandrii DFL-11]
 gi|222439375|gb|EEE46054.1| site-specific recombinase, phage integrase family protein
           [Labrenzia alexandrii DFL-11]
          Length = 416

 Score = 82.4 bits (202), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 63/348 (18%), Positives = 103/348 (29%), Gaps = 46/348 (13%)

Query: 15  RTRHGKIIY--YFR---------KGHGRRIRLPYPHESTFIPAYMSALTGST----PKRE 59
            T  GK  +   FR         KG  RR+ L          A   AL            
Sbjct: 37  VTPAGKKTWVCRFRSPVEVGKDGKGKNRRLELGEWPALPVKDARKKALAVKAIVDGGDDP 96

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKH 118
            +    K   T++ L++ Y        L  N+    E   D  I+ K GD    K+    
Sbjct: 97  TLRKELKGAETIRDLVAWYMTI---IDLKPNTLRERERQLDNVILPKVGDIRLSKVNYSV 153

Query: 119 IRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS----VERPKRKTEGIR 172
           + S  E          A     ++R LF  A  +  +A NP L     ++  +RK     
Sbjct: 154 LASVWEPYEVADKKRMASALFATLRHLFNEAHERGRIAENPLLGRKLKIKPVRRKRYLRV 213

Query: 173 PWTKEDMQQF---KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI---KT 226
             T  ++  F             ++A    L +G R  +           +         
Sbjct: 214 NETINEVAAFWHGLDAVPLDQVTKIALRLRLLTGQRTEEIYGMRESEFIADDLWFLSADR 273

Query: 227 QKTGTIITVELPDGF------MKLLAMTPIGKET-----FFINNDKQKMNATQFSIWFKA 275
            K G    V +           + LA    G ET         +  ++   T   +  KA
Sbjct: 274 TKNGEEHIVPMSPMALDLINEARALAQRKRGDETDLIFPSLTRSIPKRWVPTAVGVMSKA 333

Query: 276 KAT---KAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
                   G+   + H +R+  +T  +  G  A  +       +  +A
Sbjct: 334 INRNYEAMGLEHFTPHDLRRTLSTHCSRIGCRAEAVERFVNHISGHRA 381


>gi|159038073|ref|YP_001537326.1| integrase family protein [Salinispora arenicola CNS-205]
 gi|157916908|gb|ABV98335.1| integrase family protein [Salinispora arenicola CNS-205]
          Length = 332

 Score = 82.4 bits (202), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 37/269 (13%), Positives = 79/269 (29%), Gaps = 38/269 (14%)

Query: 85  GSLAVNSRISFESY------------FDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132
             L+ ++R ++                D +       +    T +   +    +  TP++
Sbjct: 33  RRLSDHTRDAYRRDVAGWLGWCAGADLDPLQATFLHVNAYARTLESTPTARSGKPLTPAT 92

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE--GIRPWTKEDMQQFKSFW---- 186
             + L+++   + + V+   V +NP    +RP    +       T E++           
Sbjct: 93  VARKLSALSSWYDFLVKLRAVGVNPVTGADRPHVDRDHSATVGLTPEEVNAMLVVADTAS 152

Query: 187 -SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ---KTGTIITVELPDGFM 242
               ++ R A   L   GLR  +     +  L         +   K G      L     
Sbjct: 153 GPTAARNRAAVALLADLGLRVGELVSLDITDLGVERGHHSVRFAGKGGRARRRALTPHTS 212

Query: 243 KLLAM----------TPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGVNK----SA 286
             +             P  + T    + +   +++        +  A  AG+      S 
Sbjct: 213 SAVHAYLTQRAGAAGVPTHRLTGPLLVTSTGARLDRHSVFRLVRRLARAAGIPGWARLSP 272

Query: 287 HGVRKFSATISADAGATAHELMATYGWKT 315
           H +R   AT +   G    ++    G   
Sbjct: 273 HSLRHSFATTARAEGVPLEDVQDAMGHAD 301


>gi|16129306|ref|NP_415861.1| Rac prophage; integrase [Escherichia coli str. K-12 substr. MG1655]
 gi|89108193|ref|AP_001973.1| integrase [Escherichia coli str. K-12 substr. W3110]
 gi|170081024|ref|YP_001730344.1| Rac prophage integrase [Escherichia coli str. K-12 substr. DH10B]
 gi|209918590|ref|YP_002292674.1| putative phage integrase [Escherichia coli SE11]
 gi|238900580|ref|YP_002926376.1| Rac prophage; integrase [Escherichia coli BW2952]
 gi|300819437|ref|ZP_07099633.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 107-1]
 gi|300822485|ref|ZP_07102624.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 119-7]
 gi|300904998|ref|ZP_07122816.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 84-1]
 gi|301025573|ref|ZP_07189096.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 69-1]
 gi|301305838|ref|ZP_07211923.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 124-1]
 gi|307309896|ref|ZP_07589546.1| integrase family protein [Escherichia coli W]
 gi|331677134|ref|ZP_08377830.1| integrase [Escherichia coli H591]
 gi|6166234|sp|P76056|INTR_ECOLI RecName: Full=Putative lambdoid prophage Rac integrase
 gi|1787607|gb|AAC74427.1| Rac prophage; integrase [Escherichia coli str. K-12 substr. MG1655]
 gi|85674917|dbj|BAE76408.1| integrase [Escherichia coli str. K12 substr. W3110]
 gi|169888859|gb|ACB02566.1| Rac prophage integrase [Escherichia coli str. K-12 substr. DH10B]
 gi|209911849|dbj|BAG76923.1| putative phage integrase [Escherichia coli SE11]
 gi|238863407|gb|ACR65405.1| Rac prophage; integrase [Escherichia coli BW2952]
 gi|260449520|gb|ACX39942.1| integrase family protein [Escherichia coli DH1]
 gi|300395893|gb|EFJ79431.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 69-1]
 gi|300403147|gb|EFJ86685.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 84-1]
 gi|300524901|gb|EFK45970.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 119-7]
 gi|300527936|gb|EFK48998.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 107-1]
 gi|300838928|gb|EFK66688.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 124-1]
 gi|306909614|gb|EFN40108.1| integrase family protein [Escherichia coli W]
 gi|315060599|gb|ADT74926.1| Rac prophage; integrase [Escherichia coli W]
 gi|315135986|dbj|BAJ43145.1| Rac prophage; integrase [Escherichia coli DH1]
 gi|315254388|gb|EFU34356.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 85-1]
 gi|320642615|gb|EFX11863.1| Rac prophage; integrase [Escherichia coli O157:H- str. 493-89]
 gi|320647968|gb|EFX16676.1| Rac prophage; integrase [Escherichia coli O157:H- str. H 2687]
 gi|323378838|gb|ADX51106.1| integrase family protein [Escherichia coli KO11]
 gi|331075823|gb|EGI47121.1| integrase [Escherichia coli H591]
          Length = 411

 Score = 82.4 bits (202), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 44/314 (14%), Positives = 87/314 (27%), Gaps = 65/314 (20%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHIRSGVE---- 124
           T   L   + K      L  N+    +S    +            I    I +       
Sbjct: 82  TFGELCDIWTKIKE-TELTTNTMKKTKSQLKTLRIIICESTPISHIRYSDILNYRNELLH 140

Query: 125 ------------SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
                        +  T  +   ++  +  L ++A +  +++  P   V++ +R      
Sbjct: 141 GETLYLDNPRSNKKGRTVRTVDNYIALLCSLLRFAYQSGFISTKPFEGVKKLQRNRIKPD 200

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
           P +K +         +G    L  +F +YSGLR  +      + +      +  ++  TI
Sbjct: 201 PLSKTEFNALMES-EKGQSQNLW-KFAVYSGLRHGELAALAWEDVDLEKGIVNVRRNLTI 258

Query: 233 ITVELPDG----------FMKLLAMTP-----IGKE-----TFFINNDKQK--------- 263
           + +  P                L          G       TF+     +          
Sbjct: 259 LDMFGPPKTNAGIRTVTLLQPALEALKEQYKLTGHHRKSEITFYHREYGRTEKQKLHFVF 318

Query: 264 ------------MNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMA 309
                        + +     + A   +AG+ +    H  R   A     AGA    + +
Sbjct: 319 MPRVCNGKQKPYYSVSSLGARWNAAVKRAGIRRRNPYHT-RHTFACWLLTAGANPAFIAS 377

Query: 310 TYGWKTVDQA-ETY 322
             G +T     E Y
Sbjct: 378 QMGHETAQMVYEIY 391


>gi|75761863|ref|ZP_00741791.1| DNA integration/recombination/inversion protein [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
 gi|74490646|gb|EAO53934.1| DNA integration/recombination/inversion protein [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
          Length = 363

 Score = 82.4 bits (202), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 40/279 (14%), Positives = 83/279 (29%), Gaps = 34/279 (12%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KH 128
             W     ++S+              + ++ ++++ G      IT KH+ +        +
Sbjct: 66  FDWYCQRRKQSSI--------NAIKNAIYNHLLKEFGKMKIDTITAKHVMNYQNKLLNNY 117

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP-WTKEDMQQFKSFWS 187
           +  +  Q  T +  +F +A++   +  NP       + ++      W  ++ Q+F     
Sbjct: 118 SADTLKQIHTILSAIFNFAIKFYGLTSNPARIAGNFELESNKRMSYWEFDEFQRFIDTVD 177

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSI---------KTQKTGTIITVE 236
           +       F  L YSG R  +        +       +I            KT +   + 
Sbjct: 178 DLLYN-AFFSTLYYSGARKGELLALTWADVDFVGKTININKTEYNRQVTKPKTKSSNRII 236

Query: 237 LPDGF---------MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS-A 286
           L                    P+  +          +  +     +K     AGV K   
Sbjct: 237 LLPTLIINLLKKLKEHATLTAPVKNDYVVFGEFYNSIATSTLDERYKKYVATAGVKKILL 296

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
           H  R   A+   + G +   +    G   V     TY+ 
Sbjct: 297 HEFRHSHASYLINKGVSPLVVAQRLGHSDVATTLNTYSH 335


>gi|330875187|gb|EGH09336.1| site-specific recombinase, resolvase family protein [Pseudomonas
           syringae pv. morsprunorum str. M302280PT]
          Length = 318

 Score = 82.4 bits (202), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 52/305 (17%), Positives = 94/305 (30%), Gaps = 26/305 (8%)

Query: 32  RIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNS 91
           R++   P   TF      A   +   +        K  T+  L   Y  S       +  
Sbjct: 17  RLKGKPPQSKTFS---TQAEAQAWADKLEAVIKDHKHHTIFTLGMTYCDS------HLKG 67

Query: 92  RISFESYFDQIIRKSGDFD--YRKITTKHIRSGVESRKHTPSSA--IQFLTSMRVLFKWA 147
           + S+      + + +  F      IT K +      R  T  +A     L  +   FK+A
Sbjct: 68  KGSYTHAVQIVEQLAHAFPQSIHDITPKLVNDFKLMRLQTVKAATCRHQLAFLSRFFKYA 127

Query: 148 VRQEYVA-INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRC 206
            R   +   NP   +  PK      +  T  +++   +  S      L  E    + +R 
Sbjct: 128 KRGLLIDIPNPVCDITLPKPDKSSDKVVTAGELRLILNELSP--TMALIAELAYETAMRR 185

Query: 207 SDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFIN-NDKQK 263
           S+  +  V   HL+  I  +   K GT     +P     +  +    +          + 
Sbjct: 186 SEILKLTVNCLHLEQRIVDVVDGKNGTR---SVPLTLRAIELLKEAQRLAIAERIQRGRL 242

Query: 264 MNAT--QFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
            +      S   +   T A ++     H +R    T  A  G    ++M   G +     
Sbjct: 243 FSVAPHSVSQAIRRARTAANLDSNVRLHQLRHTRITNVAKRGFNNAQIMIVSGHRDTRSV 302

Query: 320 ETYTK 324
             Y+ 
Sbjct: 303 ARYSH 307


>gi|301066294|ref|YP_003788317.1| phage integrase [Lactobacillus casei str. Zhang]
 gi|300438701|gb|ADK18467.1| phage integrase [Lactobacillus casei str. Zhang]
          Length = 350

 Score = 82.4 bits (202), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 37/280 (13%), Positives = 85/280 (30%), Gaps = 34/280 (12%)

Query: 70  TLKWLISEYRK-SAHW---GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
           T   L+ +Y      +     +  ++ ++++   + + +       R +    I++ +  
Sbjct: 55  TRDTLLVDYFSYHLEFVKKAEVKESTYLAYKRQGEILRKLFPKIRIRDLNDVLIQTIIND 114

Query: 126 RKHT-PSSAIQFLTS-MRVLFKWAVRQEYVAINPCLSV-ERPKRKTEGIRPWTKEDMQQF 182
                    +Q L + +R + K+A     +  +    +        +  R  +  ++++ 
Sbjct: 115 YASNHALKTVQLLVTPLRSVLKYAYAHGLLVNDISSLIHAHGNVPKKRNRALSITELKKL 174

Query: 183 KSFWSEGSQPRLAFEFLLYS--GLRCSDSCRAGVQHLQNNIFSIKTQ------------- 227
           + +  E +Q   A   LL +  GLR  +        L         Q             
Sbjct: 175 RHYCFEHTQSEFAILVLLATDSGLRRGEILGLKPDDLSEEAGECDVQVNRSLSPFSDAVS 234

Query: 228 -KT-GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS 285
            KT  +   V +      L+ M P+  + +             F          A V  S
Sbjct: 235 LKTESSRRKVSITKPVYDLVKMIPVKADGYI-------FERDGFHQSMMLAPFLAKVGIS 287

Query: 286 ---AHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
               HG+R   A+           +    G  ++   + Y
Sbjct: 288 QTTFHGLRDTHASFLFSQNLDLAYISQRLGHSSLLTTQNY 327


>gi|289566905|ref|ZP_06447312.1| predicted protein [Enterococcus faecium D344SRF]
 gi|289161311|gb|EFD09204.1| predicted protein [Enterococcus faecium D344SRF]
          Length = 347

 Score = 82.4 bits (202), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 47/303 (15%), Positives = 106/303 (34%), Gaps = 45/303 (14%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD-YRKITTKHIRSGVESRKH 128
           T   L+ E+        +  ++     +  + I +K  +      I T  + +  E   +
Sbjct: 39  TFHELVEEWLVIYK-RQVKESTYYPTNNILNTIKKKIPETYIVSGINTVDLNNIFEDMIY 97

Query: 129 TPSSAIQFLTSMR----VLFKWAVRQEYVAINPCLSV-----ERPKRKTEGIRPWTKEDM 179
               + ++++ ++    +LF +A+++ YV  NP   V        K      +    ++ 
Sbjct: 98  KDDLSNKYVSVIKSKLNLLFSYAMKKGYVEKNPINEVVIDYKRESKTIKIKDKFLEDDEY 157

Query: 180 QQFKSFWSEGSQPR-LAFEFLLYSGLRCSDSCRAGVQHLQ----------NNIFSIKTQ- 227
           ++   F +  ++   L F++L  +G+R  ++       +           N     + + 
Sbjct: 158 KRLVDFTTSHNKRYSLLFQWLYLTGMRPGEAIALSKDDVHITNNNASVVINGTMMYRERS 217

Query: 228 ----------KTGTIIT-VELPDG----FMKLLAMTPIGKETFFINNDKQKMNATQFSIW 272
                     KT   +  ++LP      + +LL + P G+   F          T  + +
Sbjct: 218 IADMKKSDSTKTAAGMREIDLPKKAIAIYNELLELNPNGQF-LFQTTKGTPFQLTAINTY 276

Query: 273 FKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TY---TKGA 326
            +       ++K  S+H  R    +  A+ G   + +    G +  D  E  Y   TKG 
Sbjct: 277 LRNHKADMKIDKKLSSHIFRHTHISKLAELGTPLYAIQDRVGHENSDITEKIYLHVTKGV 336

Query: 327 DRI 329
              
Sbjct: 337 KEK 339


>gi|241992604|gb|ACS73657.1| IntI [uncultured bacterium]
          Length = 314

 Score = 82.4 bits (202), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 43/304 (14%), Positives = 88/304 (28%), Gaps = 58/304 (19%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT---- 129
           L+ + R        ++ +  ++  +  + I   G    +++    +   +          
Sbjct: 15  LLDQVRDQLRVKHYSIRTEQAYVDWIKRFILFHGKRHPQEMGAPELEVFLTDLAVRGGVS 74

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            S+  Q L+++  L++  ++ +   ++   +V R KR        T  +++        G
Sbjct: 75  ASTQNQALSAVLFLYREVLKIDLPWLD---NVIRAKRPQRLPVVLTPVEVRAVLERMD-G 130

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGT---------------- 231
               L    L  +G+R  +  R  V+ +    N   I+  K G                 
Sbjct: 131 VYA-LMGRLLYGTGMRLMECVRLRVKDVDFGRNEILIRDGKGGKDRVTMLPSTVAATLAD 189

Query: 232 ----------------IITVELPDGFMKLLAMTPI--GKETFFINN-----------DKQ 262
                              V LPD   K           +  F +             + 
Sbjct: 190 HLQRRRVIFEDDLAAGKAEVWLPDALAKKYPGAGTEWAWQYVFCSGSYSTDPRSGRVRRH 249

Query: 263 KMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
            ++        K   T A + K  + H +R   AT   + G     +    G   V    
Sbjct: 250 HIDEKLLQRAMKKAVTAARLTKPATPHTLRHSFATHLLEGGYDIRTVQELLGHSDVSTTM 309

Query: 321 TYTK 324
            YT 
Sbjct: 310 IYTH 313


>gi|153011655|ref|YP_001372869.1| phage integrase family protein [Ochrobactrum anthropi ATCC 49188]
 gi|151563543|gb|ABS17040.1| phage integrase family protein [Ochrobactrum anthropi ATCC 49188]
          Length = 420

 Score = 82.4 bits (202), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 47/326 (14%), Positives = 93/326 (28%), Gaps = 43/326 (13%)

Query: 50  ALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL--------AVNS-RISFESYFD 100
           A  G            + P T+  L  +Y K+A  G++          ++ +I       
Sbjct: 78  ASGGDPAAARDEQRSAEGPLTVAELCDDYMKAARAGAILTRFHRPKKESTLQIDVGRIER 137

Query: 101 QIIRKSGDFDYRKITTKHIRSGVESRK-------------------HTPSSAIQFLTSMR 141
            I    G     ++ +K ++  +                           SA +    + 
Sbjct: 138 HIKPLIGKKHVIEVDSKVVKRLIHDITVGKTATSIKTGTRGRAIVTGGAGSAARVADLLS 197

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS---------QP 192
            +  WAV +  +  NP   V R + +    R  ++ +++Q     S G            
Sbjct: 198 GIMTWAVDEGLIRDNPVHRVRRYRGQPRQ-RFLSEVELKQLGKVLSAGRDCNEKAIHRYA 256

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTP- 249
                 L+ +G R ++        +        +   KTG  +   +     K+L+    
Sbjct: 257 LTVVHLLVLTGCRLNEIASLRWSEVDLSQRCLRLGDTKTGQSLR-AIGSAATKILSNIDK 315

Query: 250 -IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELM 308
             G +  F                 +   T    N + H +R   A+ ++  G +   + 
Sbjct: 316 LSGSDWVFPGARGDGPYQGTKREAARIFQTAELDNVTCHTLRHTYASFASGCGYSDGTIA 375

Query: 309 ATYGWKTVDQAETYTKGADRIRLGIK 334
              G K       Y    D   L   
Sbjct: 376 GLLGHKGRGVTSRYIHRPDSALLAAA 401


>gi|330718740|ref|ZP_08313340.1| phage integrase [Leuconostoc fallax KCTC 3537]
          Length = 400

 Score = 82.4 bits (202), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 50/369 (13%), Positives = 117/369 (31%), Gaps = 45/369 (12%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFR---KGHGRRIRLPYPHESTFIPAY---MSALTGSTPK 57
             R  P +    T  GK  +  R      G+R ++     ++F  A     S ++    +
Sbjct: 30  KERRDPQIQSYMTDKGK-RWRIRFTITIRGKRHQVERQGITSFDMARSMKQSIISDLESE 88

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK 117
             Y     ++    +    E   +  W         S   +  +     GD     +   
Sbjct: 89  TGYTTLTVEEY--FEQYCEEKLNNGSWR--YSTYARSKSMFKKRFYPDWGDTLMIDVRRG 144

Query: 118 HIRSGVES----RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
             +  +      + +  ++A  F   +  +F  A+  + +  NP   ++    K      
Sbjct: 145 DYQRWITKLIKDKNYAHNTASTFSHIVSSVFADALVNDDIPKNPIQKIKISGTKPR-DTS 203

Query: 174 WTKEDMQQ---FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-------- 222
            T+ + ++   +       S    A   L   GLR  +     ++++++N+         
Sbjct: 204 MTRSEFEKVFNYIKLSPSLSTQERAMAMLATLGLRHEEIDGIKLKYVKDNMIGVFEVLNL 263

Query: 223 --SIKTQKT-GTIITVELPDGFMKLLAMTP--------------IGKETFFINNDKQKMN 265
              +   KT  +   V +     + +                     +  F+++    + 
Sbjct: 264 HGEVTEPKTHSSKRWVPMTPLVEEYVNQAIKETKKVYAKKGRIMSPDDFIFVSHWGNHVR 323

Query: 266 ATQFSIWFKAKATKAGVNKSAHGVRKFSATISA-DAGATAHELMATYGWKTVDQAETYTK 324
            TQ +  F+  +   G++   H +R   +TI+    G    ++    G   +D +  Y  
Sbjct: 324 YTQLTQVFQRISQDTGIHVWPHKLRHAFSTIAFGIEGINPRDIANILGHSKLDMSMFYNN 383

Query: 325 GADRIRLGI 333
           G D  +  +
Sbjct: 384 GTDEGKQNV 392


>gi|325849126|ref|ZP_08170618.1| site-specific recombinase, phage integrase family [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
 gi|325480371|gb|EGC83434.1| site-specific recombinase, phage integrase family [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
          Length = 375

 Score = 82.4 bits (202), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 51/290 (17%), Positives = 104/290 (35%), Gaps = 33/290 (11%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKH--------- 118
           T K +  EY+K+  + +L   ++  +E  F            D + +  +          
Sbjct: 68  TFKDIYIEYKKTDDFLNLTKKTKDRYEDAFLSFKPLWNKNIMDIKALQLQKCINTKVLEG 127

Query: 119 ---IRSGVESRKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP- 173
                 G   RK  +  S  +       ++ +A R + V  N    +E      +  +  
Sbjct: 128 YYATEDGKRVRKDYSKDSISRLKHVASKIYNFAERHDLVDKNRAKVLEVKGLDPKPEKTI 187

Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFS---IKTQK 228
           +  +++ +           R     ++++G+R S+     V ++   N + +   IKT K
Sbjct: 188 FFADEINKLFKSIPYNPYARHVL-IMIFTGMRTSEYRNLKVDNIDFKNKMITDFGIKTNK 246

Query: 229 TGTIITV---ELPDGFMKLLAMTPIG--KETFFINNDKQKMNATQ----FSIWFKAKATK 279
               I     ++ D  ++L   +  G   E   IN   +K             F     K
Sbjct: 247 GRKRIMFIHEKIEDILLELAKESTTGYIVENITINRQNKKATHPSDQTFRKSIFNKALEK 306

Query: 280 AGVNKS-AHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGAD 327
           AG+ K+     R   ATI+  +G +  +LM   G +++   + +Y +  D
Sbjct: 307 AGLEKTIPKQCRYTFATIAHLSGISDMDLMDLMGHQSIMTTKNSYIQTID 356


>gi|315151187|gb|EFT95203.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0012]
          Length = 396

 Score = 82.4 bits (202), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 35/261 (13%), Positives = 80/261 (30%), Gaps = 36/261 (13%)

Query: 93  ISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWA 147
            ++++    I +           KI   H++S          PS          +    A
Sbjct: 86  RTYDNRLSAIRKHFSYYDKLPVNKIEPIHVQSWQSKLFTNLKPSYIRNIQGIFSMAMDRA 145

Query: 148 VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF------KSFWSEGSQPRLAFEFLLY 201
           V       NP   +   K++   +  WTKE+ ++       + ++       L F F+  
Sbjct: 146 VVLGMATSNPSKIIGNVKKQKTEVEFWTKEEFEKVISCIYKEDYYQHFQYICLWFLFM-- 203

Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKTQKT------------------GTIITVELPDGFMK 243
           +G+R  ++     + +      +K  KT                   +   V   D   +
Sbjct: 204 TGMRIGEATAIQWEDIDFETGMLKINKTLYYKNLSHYEFVEPKTKASSRFIVLDSDTISE 263

Query: 244 LL----AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISA 298
           L+        +   +F ++ + +              +  A V++   H +R   A++  
Sbjct: 264 LIAWRERQQQVINSSFVMSYNGEPTQKHTVRHTITRFSKLADVHRIKIHALRHSHASLLI 323

Query: 299 DAGATAHELMATYGWKTVDQA 319
             G     +    G + ++  
Sbjct: 324 QMGENPLIIKDRLGHEDIETT 344


>gi|289661974|ref|ZP_06483555.1| phage-related integrase [Xanthomonas campestris pv. vasculorum
           NCPPB702]
          Length = 394

 Score = 82.4 bits (202), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 42/323 (13%), Positives = 83/323 (25%), Gaps = 63/323 (19%)

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR-------KSGDFDYRKI 114
                +  TL +L   +  S  + +LA  ++  +                + G     +I
Sbjct: 67  ARGEVERGTLAFLDERFYGSTEFKALAPGTQKDYRQSGQAACAYVLKDGSQLGRMQVARI 126

Query: 115 TTKHIRSGVESRKH-------------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV 161
               ++  VE+                 PS A   L  +R LF W +R      NP   V
Sbjct: 127 NVPAMQRLVETLAAGREATAMQPAIEPRPSKANHVLRYLRRLFGWGIRFGLCEHNPAKGV 186

Query: 162 ERPKRKTEGIRPWTKED-------MQQFKSFWSEGSQP------RLAFEFLLYSGLRCSD 208
            + K          ++D         Q ++ +   ++                  LR ++
Sbjct: 187 RQAKEV--AAHTMPEQDAFTAILRFAQQRATFEAHTKGSVSPYLHAVMILAYNLRLRGAE 244

Query: 209 SCRAGVQHLQNNIFSIKTQKTG-----------TIITVELPDGFMKLLAM------TPIG 251
                  H          +K                   L +   + +A           
Sbjct: 245 VTDLTDAHAGEQGILATRRKGSRDNVTLWNEELRGAWAWLIEYRRRTMAAHERPVPLKPE 304

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--------SAHGVRKFSATISADAGAT 303
           +    ++     +  +     ++   T A            S HG++    T +      
Sbjct: 305 QRRLVVSQSGTPLTKSALDSAWQRMITLAIREGVIEEAQRFSLHGLKHRGITDTEGNLTD 364

Query: 304 AHELMATYGWKTVDQAETYTKGA 326
             E     G KT +    Y+   
Sbjct: 365 KQEAA---GHKTQEMTRRYSHDV 384


>gi|260549523|ref|ZP_05823741.1| shufflon-specific DNA recombinase [Acinetobacter sp. RUH2624]
 gi|260407316|gb|EEX00791.1| shufflon-specific DNA recombinase [Acinetobacter sp. RUH2624]
          Length = 337

 Score = 82.4 bits (202), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 41/320 (12%), Positives = 100/320 (31%), Gaps = 22/320 (6%)

Query: 14  ERTRHGK-IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           + TR G       R    R               + +         + ++ P K   + +
Sbjct: 3   KPTRRGNAWRIEVRFKGKRYAATRDTASE--CEQWAATKLLELQSEQPVSEPEKIHISFQ 60

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTP 130
            L   Y +       +    +       +   +  D     +T   ++   + R  +   
Sbjct: 61  ALFDMYYQDEGRKMKSARLIVQMLKCLKKNWGELADESIHNLTPALVKQWRDKRLKQVKG 120

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAI-NPCLSVERPKRKTEGIRPWTKEDMQQFKS----- 184
           ++ I+ +     +F +A ++ ++   NP   + +P       +  + + + +        
Sbjct: 121 ATVIREMAMYSSVFDFARKELFLTKENPFKEITKPSAPPPRHQRISDDHINKVIKGLDYE 180

Query: 185 --FWSEGSQPRLA--FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
                   + R+A  F F L + +R  +        +  +   +   K G+   V L   
Sbjct: 181 WGKTPTQPRHRVAWSFLFALETAMRKGEILSVQKSLIFTDFIRLLDTKNGSSRDVPLTAK 240

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISA 298
             ++L+  P        +N    + +  F + ++    + G++   + H  R  + T   
Sbjct: 241 AKEMLSWLPDDPN----DNRMVPLTSNAFRLIWQRNLRRVGLDGVITFHDSRHEAITRFV 296

Query: 299 -DAGATAHELMATYGWKTVD 317
            D       L    G KT+ 
Sbjct: 297 HDYRLPVEILAKITGHKTIS 316


>gi|227552270|ref|ZP_03982319.1| bacteriophage integrase [Enterococcus faecium TX1330]
 gi|257895152|ref|ZP_05674805.1| phage integrase [Enterococcus faecium Com12]
 gi|257897764|ref|ZP_05677417.1| phage integrase [Enterococcus faecium Com15]
 gi|261208892|ref|ZP_05923329.1| phage integrase [Enterococcus faecium TC 6]
 gi|289567444|ref|ZP_06447804.1| phage integrase [Enterococcus faecium D344SRF]
 gi|293378034|ref|ZP_06624211.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium PC4.1]
 gi|293569081|ref|ZP_06680393.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium E1071]
 gi|294616782|ref|ZP_06696529.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium E1636]
 gi|227178600|gb|EEI59572.1| bacteriophage integrase [Enterococcus faecium TX1330]
 gi|257831717|gb|EEV58138.1| phage integrase [Enterococcus faecium Com12]
 gi|257835676|gb|EEV60750.1| phage integrase [Enterococcus faecium Com15]
 gi|260077394|gb|EEW65114.1| phage integrase [Enterococcus faecium TC 6]
 gi|289160757|gb|EFD08697.1| phage integrase [Enterococcus faecium D344SRF]
 gi|291588262|gb|EFF20098.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium E1071]
 gi|291590354|gb|EFF22116.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium E1636]
 gi|292643352|gb|EFF61485.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium PC4.1]
          Length = 380

 Score = 82.4 bits (202), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 50/267 (18%), Positives = 90/267 (33%), Gaps = 45/267 (16%)

Query: 100 DQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL 159
           + I+   G+    KI+  + +  V     T         +   +FK+ V  E    NP  
Sbjct: 98  NHILPAFGELRLDKISVSYCQKQVNEWHKTLKQYGFLRKTTAQIFKFGVAMEVCKDNPMS 157

Query: 160 SVERPKRKTEGIRPW---TKEDMQQFKSFWSEGSQPRLA--FEFLLYSGLRCSDSCRAGV 214
                 RK E  +P    TK+ +Q F     E +  +L   F  L Y+G+R S++     
Sbjct: 158 K-TLLPRKIEEEQPLKFYTKDQLQLFLKNTKENNSVKLYTFFRLLAYTGMRKSEALALQW 216

Query: 215 QHLQNNIFSIKTQKT-----------------GTIITVELPDGFMKLLAMTP-------- 249
           + +     +I   KT                  +  T++L D  +K L +          
Sbjct: 217 EDIDYFNKTITIGKTIAQDEFNQVVLQVPKTKNSSRTIQLDDFTLKQLRIWQQEQMKIMI 276

Query: 250 -------IGKETFFINNDKQKMNATQFSIW----FKAKATKAGVNKSAHGVRKFSATISA 298
                    K+  F  N  +       + W    +K    +  +  + HG R    ++  
Sbjct: 277 LYGYNTNSPKQFLFTTNTNKLYYPQVVNDWLDWIYKKTPMEPQI--TPHGFRHTHCSLLF 334

Query: 299 DAGATAHELMATYGWKTVDQA-ETYTK 324
           ++GA+  E+    G K +      Y  
Sbjct: 335 ESGASIKEVQERLGHKDIKTTMNIYAH 361


>gi|225871676|ref|YP_002753034.1| integrase/recombinase, phage integrase family [Bacillus cereus
           03BB102]
 gi|225785556|gb|ACO25774.1| integrase/recombinase, phage integrase family [Bacillus cereus
           03BB102]
          Length = 361

 Score = 82.4 bits (202), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 48/328 (14%), Positives = 97/328 (29%), Gaps = 58/328 (17%)

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR----KSGDFDYRKITTKHIRSG 122
            P TL   I+E+ K   W  L+    +        I         +        +  +  
Sbjct: 35  SPATLYAYITEFEKFLKWL-LSNRLAVENGKVVTNICDVPITTLENLPLN--EARTFQRY 91

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQ-------EYVAINPCLSVERPKRKTEGIRPW- 174
           ++       +  +  ++++ LFK+  +         Y++ N    +E  K K +      
Sbjct: 92  LQGEGIETRAINRTFSALKSLFKYLAQNTENEQGENYISRNVMEKIELHKEKVDAAARAD 151

Query: 175 --------TKEDMQ--QFKS-----------------FWSEGSQPRLAFEFLLYSGLRCS 207
                    K+D+   QF +                 F  +  +       +L +GLR S
Sbjct: 152 DVANMIFNEKDDVAFLQFLANDYGEMLKDISPKKYSFFQRDKERDIAIMSLILGTGLRVS 211

Query: 208 DSCRAGVQHLQNNIFSIKTQKTGTI-----ITVELPDGFMKLLAMTPI------GKETFF 256
           +     +  +      +K  + G        T    D   + + + P        ++  F
Sbjct: 212 EVASLTISSINFRQGKVKVTRKGNKRSSVLATRSCLDDVQEYIKVRPSKYNCPQDEDLLF 271

Query: 257 INNDKQKMNATQFSIWFK---AKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGW 313
           + N K K          K     ++     +S H +R   AT           L    G 
Sbjct: 272 VTNYKGKYTQLTVRAIQKLCDKYSSAFDEKRSPHKLRHTYATNHYKENKDLVLLRDQLGH 331

Query: 314 KTVDQAETYTKGADRIRLGIKNSRRISS 341
            +V+    YT   +  +   +   R+  
Sbjct: 332 TSVEVTSIYTNINNEKKR--EAVDRLER 357


>gi|319954949|ref|YP_004166216.1| integrase family protein [Cellulophaga algicola DSM 14237]
 gi|319423609|gb|ADV50718.1| integrase family protein [Cellulophaga algicola DSM 14237]
          Length = 212

 Score = 82.4 bits (202), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 24/166 (14%), Positives = 54/166 (32%), Gaps = 10/166 (6%)

Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYS---GLRCSDSCRAGVQH--LQNNIFSIKTQK 228
            +  +++   +   +   P+  +  LL +   GLR S++         ++ +   I   K
Sbjct: 41  LSDAEIKSLLAASKKTRYPKRNYLLLLMTYRHGLRVSEAIAIKKSDVNIKESRIWINRLK 100

Query: 229 TGTIITVELP-DGFMKLLAMTPIGKETF---FINNDKQKMNATQFSIWFKAKATKAGV-N 283
           +G  +   +  D    +       ++     F+N     +     +      AT A + N
Sbjct: 101 SGLSVEHPISGDELRAIKRYLNSREDNLPWLFVNERGLPLTRQAINYIVNVIATAAKLEN 160

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              H +R       A+ G     +    G +       YT+   + 
Sbjct: 161 VHPHTLRHSCGFYLANKGYDLRLIQDYLGHRDPKHTAHYTRVVSKR 206


>gi|283957150|ref|ZP_06374614.1| site-specific recombinase, phage integrase family [Campylobacter
           jejuni subsp. jejuni 1336]
 gi|283791326|gb|EFC30131.1| site-specific recombinase, phage integrase family [Campylobacter
           jejuni subsp. jejuni 1336]
          Length = 354

 Score = 82.4 bits (202), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 40/286 (13%), Positives = 97/286 (33%), Gaps = 52/286 (18%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           LI E   S   G+L+  S+ ++                  I   +    ++ +      A
Sbjct: 102 LIVEVLASIT-GALSDASKKNYR-----------------IAVINFFDFLDKQNEEDEKA 143

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS--- 190
             F  +++    WA             V+ P          ++E++++F           
Sbjct: 144 HIFNINLK---NWAGIAG------SKGVKLP-------EFMSEEELKKFLDAIENADFKN 187

Query: 191 ---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVE----LPD 239
              + +L  + ++++G+R S++    +  +       I  I+ +     + +     + D
Sbjct: 188 NTIRNKLIIKIIIFTGIRVSEAINIKMGDISEENDLYIIRIRAKGNKYRVVMIKKELIYD 247

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATI 296
               +           F+N     +  +  S   +    +AG+ K    AH +R   AT+
Sbjct: 248 LLKNVSINYMSKDALLFVNKKGTPLTQSYVSRIVEQLLFRAGIRKQKNGAHMLRHTFATL 307

Query: 297 SADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSRRISS 341
                     +    G  +++ +  YT    D+++L  + ++ +S 
Sbjct: 308 LYKKQKDLILVQEALGHASLNTSRIYTHFDNDKLKLAAQVAKELSD 353


>gi|256845938|ref|ZP_05551396.1| phage integrase [Fusobacterium sp. 3_1_36A2]
 gi|256719497|gb|EEU33052.1| phage integrase [Fusobacterium sp. 3_1_36A2]
          Length = 351

 Score = 82.4 bits (202), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 49/353 (13%), Positives = 106/353 (30%), Gaps = 56/353 (15%)

Query: 7   LPPFVTKERTRHGKI--IYYF------RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKR 58
           +P +   +  + GK   ++Y+      R+   RR          F   ++          
Sbjct: 5   MPAY---KDDKTGKWEALFYYTDYKNERRKKHRRGFNTKREALEFEREFL---------- 51

Query: 59  EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTK 117
               S      T K L S Y        +   +  + E   + +I+        + I   
Sbjct: 52  --TQSQFSIEMTFKSLYSLYHNDMK-SRIKKTTMETKEYIVNTKILPFFEKMKVKDIKPI 108

Query: 118 HIRSG---VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP-KRKTEGIRP 173
           HIR     +   +++ +        +  +F +A+R   +  NPC       K+  + ++ 
Sbjct: 109 HIRKWQTDLLKMEYSKTYLKTIYNQLTAIFNYAIRFHNLDKNPCHIAGSIGKKDADEMQI 168

Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233
            + ++  +     ++  + +  +  L ++G+R  +      + +     +I   K   I+
Sbjct: 169 LSLQEFNKMIDCVTD-KENKFFYIILFWTGMRKGELLALTYEDVDFENKTITINKNFQIV 227

Query: 234 TVELPDGFMKLLAMTPIGKETF------------FINNDKQK--------MNATQFSIWF 273
                   +     TP G+                 N   +         ++        
Sbjct: 228 K----KERLITDPKTPRGRRVIAVNDVVLNCIKDLWNTSYKPNKTDKIFYLSKDSLKRQL 283

Query: 274 KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
                KAGV +   H +R   A+     G     L    G + V      Y  
Sbjct: 284 DTACKKAGVPRIRVHDLRHSHASYLLSNGVNIVILSRRLGHEKVQTTLNIYCH 336


>gi|237718481|ref|ZP_04548962.1| site-specific recombinase [Bacteroides sp. 2_2_4]
 gi|229452188|gb|EEO57979.1| site-specific recombinase [Bacteroides sp. 2_2_4]
          Length = 406

 Score = 82.4 bits (202), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 38/265 (14%), Positives = 87/265 (32%), Gaps = 25/265 (9%)

Query: 85  GSLAVNSRISFESYFDQIIR------KSGDFDYRKIT---TKHIRSGVESRKHTPSSA-I 134
             +   + + +E     +        +  D     I      +    +++ K+   +A +
Sbjct: 129 KDVVKATVLRYERTVRYLEEFLKKEYQLNDIPLYNINHEFISNFEFFIKTEKNCAQNATV 188

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF-KSFWSEGSQP- 192
           ++L +++ +   A+  +++  NP   + R K+        ++E++    +  +       
Sbjct: 189 KYLKNLKKIIILALTNKWMTDNPFSGI-RFKQTQSNREFLSEEELHIIMEKKFKIPRLEI 247

Query: 193 -RLAFEFLLYSGLRCSDSCRAGVQHL-----QNNIFSIKTQKTGTIITVELPDGFMKLLA 246
            R  F F   SGL  +D      +H+       N      +KT  +  + L D     L 
Sbjct: 248 VRDIFVFCCLSGLAFTDIKHLRPEHITKGPNGENWIRKPREKTNNMCHIPLLDI--PALI 305

Query: 247 MTPIGKETFFINND--KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302
           +         +  +           + + K  A   G+ K  + H  R   A I+     
Sbjct: 306 VEKYKNNPICVQKNMVLPVPCNQLMNSYLKEIADMCGITKKLTTHVGRHTFACIALANKV 365

Query: 303 TAHELMATYGWKTVDQAETYTKGAD 327
           +   +    G   +   + Y K  D
Sbjct: 366 SMETIARMLGHSDIRTTKIYAKVLD 390


>gi|218885871|ref|YP_002435192.1| integrase family protein [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218756825|gb|ACL07724.1| integrase family protein [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 371

 Score = 82.4 bits (202), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 46/259 (17%), Positives = 85/259 (32%), Gaps = 49/259 (18%)

Query: 111 YRKITTKHIR---SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167
              IT +H++   + +  ++   SS  + L+++R  F++ +R   V  +P   V  PK+ 
Sbjct: 63  PEHITKRHVQRFLAELHRQRIAKSSVARKLSALRAFFRFLLRLRRVTADPTAGVHNPKQD 122

Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL---------------------------- 199
                      + Q  +   E  + R A                                
Sbjct: 123 QRHPHALN---VDQAFALLDE-RRQRKALATAHATAHAGHGTDFGPTDAALLARDLALAE 178

Query: 200 --LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-ELPDGFMKLLAMT-------- 248
               SGLR S++    V         ++    G    +  L D     L+          
Sbjct: 179 LLYGSGLRVSEALELNVLDADPASGVVRVMGKGGRERMSPLSDTARDALSAWLAVRHQVD 238

Query: 249 -PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAH 305
              G+   F+     ++N  Q +   +    +AG+ +  S HG+R   AT   +AGA   
Sbjct: 239 EGRGEPALFLGARGGRLNRRQAARIIETLCLRAGLPQAISPHGLRHSFATHLLEAGADLR 298

Query: 306 ELMATYGWKTVDQAETYTK 324
            +    G   +   + YT 
Sbjct: 299 SVQELLGHARLSTTQRYTH 317


>gi|121594884|ref|YP_986780.1| phage integrase family protein [Acidovorax sp. JS42]
 gi|120606964|gb|ABM42704.1| phage integrase family protein [Acidovorax sp. JS42]
          Length = 400

 Score = 82.4 bits (202), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 44/305 (14%), Positives = 104/305 (34%), Gaps = 26/305 (8%)

Query: 49  SALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSG 107
           +A      ++    +  K   T      ++ +      +A ++R    S +++ +  K G
Sbjct: 77  AAGKSPAKEKARDKARVKDAETFGAWAEKWLRGYQ---MADSTRDMRRSVYERELKPKFG 133

Query: 108 DFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165
           +    +IT + +R+  ++   +  P++A+     +  +F+WA+ +     NP   V    
Sbjct: 134 NQKLVEITHEDLRALTDAIVERGAPATAVHVREVVLQVFRWAIERGQKVENPAELVRPTT 193

Query: 166 RKT--EGIRPWTKEDMQ---QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQ 218
                   R  T +++    Q+          R A + LL + +R S+   A     +  
Sbjct: 194 IAKFEPRDRALTPDEIGLMYQYMERIGTAPSIRAAAKLLLLTMVRKSELTNATWSEINFS 253

Query: 219 NNIFSIKTQ--KTGTIITVELPDGFMKLLAMTPI---GKETFFINNDKQ--KMNATQFSI 271
           + +++I  +  K      V L    + +         G +    +       M++   + 
Sbjct: 254 DALWTIPKERMKRRNPHLVFLSRQALDIFIALKTFAGGSDYVLPSRYDSDLPMSSATLNQ 313

Query: 272 WFKAKATKAGVNKS------AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
                   A            H +R+ ++T+  +AG     +      +       Y K 
Sbjct: 314 VLTLTYRLAQKEGKSLAKFGPHDLRRTASTLLHEAGYNTDWIEKCLAHEQRGVRAVYNKA 373

Query: 326 ADRIR 330
             R +
Sbjct: 374 EYREQ 378


>gi|328473182|gb|EGF44030.1| integrase [Vibrio parahaemolyticus 10329]
          Length = 565

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 44/347 (12%), Positives = 99/347 (28%), Gaps = 64/347 (18%)

Query: 56  PKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT 115
             +      +    ++  +   Y +S         +        +++I   GD D  ++T
Sbjct: 217 ANKHQPKRKKASQYSISNVFKRYHQSEILKDKDAKALYEAGLQIERLIEVIGDLDVTEVT 276

Query: 116 TKHIRSGVESRKHTP-----------------------------SSAIQFLTSMRVLFKW 146
             HI    ++    P                             ++    L    V+F +
Sbjct: 277 RAHIVEFRDTLLQLPKSKIASIRNRPLLEQIELVKIQGLETLSATTVKNCLRKTSVVFSY 336

Query: 147 AVRQEYVAINPCLSVER----PKRKTEGIRPWTKEDMQQFK---------SFWSEGSQPR 193
           A+    +  NP + V       K +    + +T  +M++           +    G    
Sbjct: 337 AIELGIIDSNPHVGVRVATAEKKTEANEGKGYTDSEMRRLFQADVFNDANARKPYGMACY 396

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSI---------KTQKTGTIITVELPDGFM 242
                  Y+G R  +  +     +   ++               +   ++  V +P   +
Sbjct: 397 WVPLLCRYTGARLEEMSQLHKSDVSQSDSGIHYLNIRRGEGQSVKNNSSLRHVPIPAHLI 456

Query: 243 KLLAMTPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSA 294
           +L  +  + +   F+      N   +K  +   S W+       G++ +  AH  R    
Sbjct: 457 ELGFLDYVAESVGFLFPELKENKYGKK--SAALSKWWGQTVRSLGIHTTQPAHAFRHTFK 514

Query: 295 TISADAGATAHELMATYGWKTVDQAETY-TKGADRIRLGIKNSRRIS 340
           T     G       A  G        +Y T   +  +  I    R++
Sbjct: 515 TALRRLGIADTVSDAITGHTPAGVGGSYGTVELETKKEAIDRLPRLA 561


>gi|262273295|ref|ZP_06051110.1| integrase [Grimontia hollisae CIP 101886]
 gi|262222668|gb|EEY73978.1| integrase [Grimontia hollisae CIP 101886]
          Length = 346

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 70/223 (31%), Gaps = 11/223 (4%)

Query: 109 FDYRKITTKHIRSGVESRKHTPSSA-IQFLTSMRVLFKWAVR-QEYVAINPCLSVERPKR 166
             +R +      +     K   ++     L  ++ +F + +   E+   NP  SV++   
Sbjct: 110 LHWRSLRVNRYAAQHGKDKQAAAATHNVDLALLKGVFNFLISADEWHLPNPLASVKKLAS 169

Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223
               +   T+++++     + + +      L  +  L +G R S+        +     +
Sbjct: 170 DQAEMTYLTEDEIRLLLGSFEKATYKASYLLVCKLCLATGARISEIENLTRSQVSQFKVT 229

Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
               KT    TV + +     L +    +E        +KM   + + WF          
Sbjct: 230 FTKTKTKQNRTVPISEEL--YLELIRYDEEHGLPVQPVRKMLEKRLAKWFPRLPD----G 283

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           +  H  R   A+     G     L    G   +     Y   A
Sbjct: 284 QKTHVFRHTFASHFMQHGGDILTLQRILGHANIQMTMKYAHFA 326


>gi|39997562|ref|NP_953513.1| bifunctional hypothetical protein/integrase [Geobacter
           sulfurreducens PCA]
 gi|39984453|gb|AAR35840.1| hypothetical protein/integrase, fusion [Geobacter sulfurreducens
           PCA]
 gi|298506503|gb|ADI85226.1| integrase domain protein [Geobacter sulfurreducens KN400]
          Length = 457

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 43/291 (14%), Positives = 86/291 (29%), Gaps = 61/291 (20%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT----PSSAIQFLTSMRVL 143
           +  +  ++  +  Q  R   +    ++TT  ++  +           S+  Q   S+  L
Sbjct: 158 SRKTLQTYAKWCRQFQRFLKNKPPVELTTADVKEYLTWLAVKCNVAASTQNQAFNSLLFL 217

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF--WSEGSQPRLAFEFLLY 201
           F+ A+++++  +     V R K+        ++ ++    +      G    L  + L  
Sbjct: 218 FRHALKRDFGEL---RDVPRAKKSLYVPVVLSRAEIDAILAHLYHPHG----LIVKLLFG 270

Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMT------------ 248
            GLR  +  +  V+    +   +    K     T+ LP+  +  L               
Sbjct: 271 CGLRLFECLQLRVRDFNFDAGILTVHGKGKKDRTLPLPESILNDLQRQMRRVKELHEKDL 330

Query: 249 ------------------------------PIGKETFFINNDKQKMNATQFSIWFKA--- 275
                                         P    T    N + +      S+  KA   
Sbjct: 331 EQGYDGVFLDDAMEKKYPKAPKELIHQWFFPQKDLTPVEANGQLRRAHVHESLLQKALYL 390

Query: 276 KATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              KA + K  +AH  R   AT    A      +    G  ++     YT 
Sbjct: 391 AVRKAKIPKRVTAHTFRHSYATHLLQANYDIRTIQTKLGHASLKTTMIYTH 441


>gi|257467272|ref|ZP_05631583.1| integrase/recombinase [Fusobacterium gonidiaformans ATCC 25563]
 gi|315918401|ref|ZP_07914641.1| DNA integration/recombination/inversion protein [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|313692276|gb|EFS29111.1| DNA integration/recombination/inversion protein [Fusobacterium
           gonidiaformans ATCC 25563]
          Length = 333

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 41/275 (14%), Positives = 84/275 (30%), Gaps = 42/275 (15%)

Query: 88  AVNSRISFESYFDQIIR--KSGDFDYRK---------ITTKHIRSGVE----SRKHTPSS 132
           +  +   +  Y    +     GD  +++         I  + +   +      R    +S
Sbjct: 33  SPKTLQDYLFYLKDFLSFVYDGDGSFQQEEILPLMKGIEKEDVEQYIAHLLQERNMKKTS 92

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED------MQQFKSFW 186
             + +++M+ L+K    ++Y   NP   V+  K                   ++QF+   
Sbjct: 93  VNKVISAMKSLYKEL--EQYQVENPFRYVKLFKTTRNLDNILKISSNDIKKIIEQFQVKN 150

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGFM 242
            +  +  +    L Y+G+R  +      +HL N        ++  K+G      L    M
Sbjct: 151 EKDYRNLMILYTLYYTGMRSDELLHMEFRHLMNREGSYFLKLEKTKSGREQYKPLHPALM 210

Query: 243 KLLAMTPI-------------GKETFFINND--KQKMNATQFSIWFKAKATKAGVNKSAH 287
           + L                       F ++    + ++        K+         S H
Sbjct: 211 EKLQEYKKEMKALYQLEEEDLQNHFVFCSHFDKNKALSYRALYDLIKSLGLSIEKEMSPH 270

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
            +R   AT  +  GA   E+    G       E Y
Sbjct: 271 NIRHAIATELSLNGADLVEIRDFLGHADTKVTEVY 305


>gi|77734441|emb|CAJ26227.1| integerase-recombinase [Thermotoga naphthophila RKU-10]
          Length = 190

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 38/197 (19%), Positives = 69/197 (35%), Gaps = 25/197 (12%)

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAI-----NPCLSVERPKRKTEGIRPWTKEDMQQ 181
           K+TP++    L  ++    W   +  + I     N       P R T   +    +++++
Sbjct: 9   KNTPATQRNKLVVVKNYLNWKADRGLLNIEERFWNEAE----PPRHTVLPKAIELDEVRR 64

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN---IFSIKTQKTGTIITVELP 238
                   S  R  F+ L  +G+R S+     V  +  N      IK +     I + + 
Sbjct: 65  IIEACD-NSLYRAIFKVLANTGMRVSEIVNLSVHDISVNETARIRIKGKGNKERI-INIS 122

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATI 296
              ++ L         FF     +K +        K  A KAG+ K  + H  R   A  
Sbjct: 123 KELVEELM-----NSGFFE----KKPSVRSIQRAVKRYARKAGIKKKVTPHIFRHSFAVA 173

Query: 297 SADAGATAHELMATYGW 313
             + G   +++ A  G 
Sbjct: 174 LIERGVPLNKIQALLGH 190


>gi|318057315|ref|ZP_07976038.1| integrase [Streptomyces sp. SA3_actG]
 gi|318075333|ref|ZP_07982665.1| integrase [Streptomyces sp. SA3_actF]
          Length = 357

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 43/273 (15%), Positives = 81/273 (29%), Gaps = 37/273 (13%)

Query: 85  GSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR------KHTPSSAIQFL 137
             L+  +   +       I+   G +D  +IT   +R+    R        T + A + L
Sbjct: 51  RGLSATTAELYRRLLRLHILPTFGAWDLDEITPPRVRTWRAERLVETGAATTVAKAYRLL 110

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE 197
            ++      A   E +  NPC      K      +  T   +       + G + RL   
Sbjct: 111 KAILET---ATDDELIRRNPCRIRGAGKESAPERQVATVAQVDALAD--ALGPRWRLMVY 165

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ------KTGTIIT-----------VELPDG 240
              Y  LR  +      + +  +  +I+ +       TG  +            + LP  
Sbjct: 166 LGAYGPLRPEEQAELRRRDVDLDTMTIRVRMAAPELTTGRRVLGDTKSEAGRRLIVLPSF 225

Query: 241 FMKLLA------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292
               L                F+    +    + F   ++      GV      + +R  
Sbjct: 226 LRTDLRRHLDWYAEKGPDGLLFVGEKGKPFRRSTFGRKWRRAREVVGVPDGFRFYDLRHT 285

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKG 325
             T++  +GAT  + M   G  +   A  Y   
Sbjct: 286 GHTMATRSGATLKDTMVRAGQSSERAALIYQHS 318


>gi|315146060|gb|EFT90076.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX2141]
          Length = 280

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 47/272 (17%), Positives = 87/272 (31%), Gaps = 56/272 (20%)

Query: 108 DFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167
           D   R   TK  +  +    H+     +F + + + F +A     +  NP   V+  K  
Sbjct: 4   DVLIRNTDTKFFQDFINDLPHSWEYKKKFKSVLNMSFTYAQDMGMIDENPINRVKVVK-- 61

Query: 168 TEGIRPWTKEDMQQFKSFWSEG-----------------SQPRLAFEFLLYSGLRCSDSC 210
                P TKE+ +  +S + E                     RLA EF+  +GLR  ++ 
Sbjct: 62  ----PPLTKENFENIESKYLEEREVYQLLSYYYSTFQSVHHGRLA-EFMYLTGLRAGEAI 116

Query: 211 RAGVQHLQNNIFSIKTQKT------------------GTIITVELPDGFMKLLAMTPIGK 252
              +     N  +I    T                   +   VEL +  ++++    + +
Sbjct: 117 SLTINDYVKNEHAILVNGTLDYSNGYKNATKELPKTLASFRKVELSNRAVEIIEELILER 176

Query: 253 E--------TFFINNDKQKMNATQFSIWFKAKATKAGVNK-----SAHGVRKFSATISAD 299
           E          F+      +    F+   K      G NK     S+H  R    ++ A+
Sbjct: 177 EIKFKEQTNYLFVGKTGNPIQVNSFNASLKKANESLGKNKINKTISSHIFRHSHISLLAE 236

Query: 300 AGATAHELMATYGWKTVDQA-ETYTKGADRIR 330
                  +M   G    +   + YT    + +
Sbjct: 237 LNVPVKAIMERVGHVDTETTLKIYTHVTKKAK 268


>gi|259416936|ref|ZP_05740856.1| putative phage integrase [Silicibacter sp. TrichCH4B]
 gi|259348375|gb|EEW60152.1| putative phage integrase [Silicibacter sp. TrichCH4B]
          Length = 507

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 53/271 (19%), Positives = 95/271 (35%), Gaps = 27/271 (9%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK---HIRSGVESRK 127
           L  L++ Y  +  W S  + S+ + E      IR SG+    ++       +   +E+  
Sbjct: 218 LSNLLASYMLAKKWDSRKIKSKTTAERQIKAFIRSSGNPCVTEVKKSMAYDLARELEAEG 277

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPC--LSVERPKRKTEGIRPWTKEDMQQFKSF 185
            + S     +++   +  W   +  +  NP   L++     KT+  RP+    +    + 
Sbjct: 278 KSNSLIRSTISAASAMLTWCELEGTIDANPLVHLNLSDFGTKTKHYRPFEPAQLHSLFAM 337

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-NIFSI------KTQKTGTIITVELP 238
                Q RL  E L+ +G+R  ++       ++  N            +   +   V LP
Sbjct: 338 -KMPEQERLLLEILVTTGMRLDEAALLTWDQVKERNGIRYFDLSDAIVKNKASARLVALP 396

Query: 239 DGFMKLLAMTPIGKETFF---INNDKQKMNATQ--FSIWFKAKATKAGVNKS--AHGVRK 291
           D     L + P G    F   ++ D +  N          K    K   +KS   H +R 
Sbjct: 397 D----CLTLPPQGTGRLFDYTLDADGKASNRASRVLGGLIKKVPNK---HKSQVLHSLRG 449

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETY 322
               +  DAG +        G    D A TY
Sbjct: 450 TLKDLLRDAGVSKETNDYITGHSGSDVASTY 480


>gi|167892209|ref|ZP_02479611.1| Integrase or site-specific recombinase [Burkholderia pseudomallei
           7894]
          Length = 409

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 37/305 (12%), Positives = 91/305 (29%), Gaps = 23/305 (7%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWL--ISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSG 107
           + G           R    +L  +   ++Y         +     +     ++ I    G
Sbjct: 81  VAGGVSPVADARKDRGAVKSLDTIHEFAQYWIEQQMAGKSDEYLRTTRRALEKDIYPAIG 140

Query: 108 DFDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV--ER 163
                 +T   + +  +  K    P  A+     ++ ++++A+ ++ V  NP  +V    
Sbjct: 141 GKSVSDVTPGDVLAICDRIKKRGAPKMALSTRNILKRIYEYAIARQLVTNNPAQAVVARF 200

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQPR---LAFEFLLYSGLRCSDSCRAGVQHLQNN 220
              +    R  + +++          S  R   LA   L+ + +R S+   A       +
Sbjct: 201 VATQDSRDRVLSPDEIGHVLRAVYASSIRRPLKLAIHLLVLTMVRKSELIEARWDEFDLD 260

Query: 221 IFSIK----TQKTGTIITVELPDGFMKLLA---MTPIGKETFFINNDK--QKMNATQFSI 271
               +      K      V L    + +L          +  F ++    + +  +  + 
Sbjct: 261 ASIWRIPAERMKKDREHWVYLAPQAVAMLRELHAIRTSHQYVFPSSRGADRPIAKSTLNQ 320

Query: 272 WFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA---DR 328
             +        +   H  R+ ++T   + G  +  +              Y +     DR
Sbjct: 321 AVR-ALDMDVQHFVLHDFRRTASTHLHEMGQPSDAIEKALAHSIKGIKGVYNRAEYADDR 379

Query: 329 IRLGI 333
            R+  
Sbjct: 380 RRIMA 384


>gi|18249865|ref|NP_543053.1| putative integrase [Enterobacteria phage phiP27]
 gi|18152332|emb|CAC83519.1| putative integrase [Enterobacteria phage phiP27]
          Length = 437

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 26/240 (10%), Positives = 73/240 (30%), Gaps = 46/240 (19%)

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
           +R  +  +   ++T++  +F++A    Y+  NP   ++  K+      P T+++  +   
Sbjct: 153 ARGRSVVTVNYYMTTIAGMFQFAADHGYLEANPFEGIKPLKKARAEPDPLTRDEFIRLID 212

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII----------- 233
                 Q +  +   +Y+G+R  +      + +     +I  ++  T +           
Sbjct: 213 AC-RHQQTKNLWSLAVYTGMRHGELVSLAWEDIDLKAGTITIRRNYTKLGEFTLPKTEAS 271

Query: 234 ----------TVELPDGFMKLLAMTPIGKETFFINNDKQK-------------------- 263
                      + +     ++  +         +    +                     
Sbjct: 272 TNRVVHLIQPAISVLKNQAEMTRLGKQHHIKVQLREYGRSVNHECTFVFNPQVVRKSKQV 331

Query: 264 ---MNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
                       ++    +AG+ ++ A+  R   A  S  AGA    + +  G  +    
Sbjct: 332 GFIYKVDSIGDSWETAIKRAGIRHRKAYQSRHTYACWSLSAGANPSFIASQMGHASAQMV 391


>gi|329961823|ref|ZP_08299837.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
 gi|328531263|gb|EGF58107.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
          Length = 394

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 44/270 (16%), Positives = 98/270 (36%), Gaps = 26/270 (9%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVESRKHTPSSAI 134
           +R+     +L  +++ +  S    +     D  +  +T          ++S+ +  ++  
Sbjct: 111 FRQEVTNSALKESTKRNHLSTLTLLQEFKKDVSFSDLTFEFISSFEYFLQSKGYHTNTIA 170

Query: 135 QFLTSMRVLFKWAVRQEYVAINP-CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG---- 189
           + +  ++     A+ ++Y+ I        + K           E++++ +     G    
Sbjct: 171 KHMKHLKRHINVAINKDYMEIQKYAFRKYKIKTIENKHTHLAPEELEKLERLNLIGRYTK 230

Query: 190 -SQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVEL-----PD 239
             +   AF F  Y+G+R SD       ++    +      K+ KT T + + L       
Sbjct: 231 YQKTLDAFLFCCYAGMRYSDFISLTPDNIVEIHKETWLIYKSVKTNTEVRLPLYLLFEKK 290

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS 297
           G + L       ++ F + ++      +  +      A  AG++K  S H  R  +AT+ 
Sbjct: 291 GLVILEKYQDNIQDFFHLRDN------SNVNKDLIILARLAGLSKKISFHTARHTNATLL 344

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGAD 327
              G     +    G K+V   + YT   D
Sbjct: 345 IYNGVNITTVQKLLGHKSVKTTQVYTNVMD 374


>gi|317504687|ref|ZP_07962651.1| integrase [Prevotella salivae DSM 15606]
 gi|315664191|gb|EFV03894.1| integrase [Prevotella salivae DSM 15606]
          Length = 431

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 51/292 (17%), Positives = 99/292 (33%), Gaps = 29/292 (9%)

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLT 138
           R    + +L  + R   E   ++ ++        +   +  R  ++ R    S+    L 
Sbjct: 123 RAEGTYLNLFYSDRNLREFVENKGVQDISIGTITEDLFEEYRFFLKKRGLKASTVNSNLC 182

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WSEGSQPRLA 195
            +  L   AV +  +  NP  + +  K + + IR   K D+ +  +      E    RL 
Sbjct: 183 WLSRLMFRAVSKRIIRCNPFENAKYDKEEKK-IRFLQKSDVMKLMAMKMNDREAELARLM 241

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQN---NIFSIK--TQKTGTIITVELPDGFMKLLAMTPI 250
           F F  ++GL  SD      +H+Q        I+   QKT     V L      ++     
Sbjct: 242 FVFSCFTGLAISDMENLEYKHIQTAAYGQMYIRKERQKTKVEFIVPLHPIAEAIINHCRS 301

Query: 251 GKETFFINNDKQKMNATQFSIWFKAKA-------------TKAGV--NKSAHGVRKFSAT 295
            K     + ++Q +     ++ F                    G+    S H  R    T
Sbjct: 302 EKRR---SEEQQTVKEKDDNLVFHRDCSRSVMDAKLSIVGKACGICQRLSFHMARHTFGT 358

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
           +S  AG     +    G  ++   + Y +  D+     K+  R+ +   + +
Sbjct: 359 MSLSAGIPIESIAKMMGHASISSTQVYAQVTDKK--ISKDMDRLIAKQSAKE 408


>gi|301159218|emb|CBW18733.1| bacteriophage integrase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|323131006|gb|ADX18436.1| gp27 phage protein [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
          Length = 349

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 43/318 (13%), Positives = 89/318 (27%), Gaps = 33/318 (10%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87
             GRRIR    +      A+ +     +  + ++   ++    L  +I  +    +    
Sbjct: 20  REGRRIR-RQFNTKGEAEAFEAFTKSESEDKPWLGK-KEDRRRLSEIIQLWH---NLHGQ 74

Query: 88  AVNSRISFESYFDQIIRKSGD--------FDYRKITTKHIRSGVE--------SRKHTPS 131
           A+ +  S  +    +    GD         D+     + +R  ++             P 
Sbjct: 75  ALVASKSRLAKLQIVCNGLGDPIASRLTAKDWAHYRDRRLRGEIDNGYHKDPAKWIAKPI 134

Query: 132 SAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           +  +    +  +F    R   +   NP   +   K   + +   T   + +      +  
Sbjct: 135 TVNREQQYLEAVFNELRRLGEWSLPNPLDGIRVFKEAEKEMSWLTLSQLAELFRACEQYG 194

Query: 191 QPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248
           +  L    +  L +G R  ++ R     L     +    K     TV +P      L+  
Sbjct: 195 KENLTMIVKVCLATGARWGEAERLTRPQLSPYKLTFTKTKGKKNRTVPIPKWLYDELSE- 253

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELM 308
                 F       K    +F    K    +    +  H +R          G     L 
Sbjct: 254 -RQGRMF-------KPCYQEFKKMLKLTNIELTEGQKTHVLRHTFGAHFMMNGGNILVLQ 305

Query: 309 ATYGWKTVDQAETYTKGA 326
              G   + +   Y   A
Sbjct: 306 KILGHANIRETMKYAHFA 323


>gi|260576807|ref|ZP_05844791.1| integrase family protein [Rhodobacter sp. SW2]
 gi|259020950|gb|EEW24262.1| integrase family protein [Rhodobacter sp. SW2]
          Length = 427

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 40/249 (16%), Positives = 80/249 (32%), Gaps = 17/249 (6%)

Query: 91  SRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQ 150
           +    +   ++I    G     K    +    ++  K TP  A +    +R +F  AV  
Sbjct: 151 TSTDVDKLLNKIAE--GRPRPHKEKPNNRAKKLQPSKPTPVRANRIGEVLRKMFTLAVEW 208

Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA--FEFLLYSGLRCSD 208
            +   NP     R + +T   R  +K+++    +        R A      + +G R  +
Sbjct: 209 GWCEDNPAQRFHR-RIETARERFLSKDEINSLAAALDAAEDRRAADIIRMCMLTGARLGE 267

Query: 209 SCRAGVQHLQNNIFSIKT----QKTGTIITVELPDGFMKLLA----MTPIGKETFFIN-N 259
             +A  +       S        K   +  V + D    ++     + P G    F +  
Sbjct: 268 VRQARFEQFNLEHMSWSKPPAMTKQRRVHRVPISDETASIVRQRQLVVPRGTPWLFPSDT 327

Query: 260 DKQKMNA-TQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
             Q +    +F    + +     V+   H +R   A++    GA+   +    G   +  
Sbjct: 328 PGQPVQEVRRFWAQIQQECGLQEVH--IHDLRHTFASLLVSGGASLEMIGKLLGHSQMQT 385

Query: 319 AETYTKGAD 327
              Y    D
Sbjct: 386 TLRYAHLMD 394


>gi|206602548|gb|EDZ39029.1| Putative integrase [Leptospirillum sp. Group II '5-way CG']
          Length = 388

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 46/328 (14%), Positives = 98/328 (29%), Gaps = 23/328 (7%)

Query: 17  RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76
           + G       +  G                +         +  Y +    + TTL   + 
Sbjct: 38  KRGNTWQAIVRIKGHETVAHTFDTKAQAEEWHEETRFEIRRGRYFSRKEVENTTLAEALD 97

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT--PSSAI 134
            Y +         + R         +           I    I +  + R  T  P++  
Sbjct: 98  RYER--EILPSKKSQRPVRVVIRQWLAHPLAKRALVSIRGSDIAAWRDDRLKTVSPNTVR 155

Query: 135 QFLTSMRVLFKWAVRQ-EYVA-INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
             L  +  LF  A+++      +NP   + +PK      R     ++ +          P
Sbjct: 156 LDLALLSHLFTIAIKEWGMTGLVNPVQQIRKPKLPKGRDRRLNPGELDRIVEASCSPLLP 215

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250
            +   F L + +R  +      +   L+    ++   K G    V L    +++L+  P 
Sbjct: 216 EIIR-FALETAMRRGEITGMTWKLVDLKKRTATLLDTKNGEKRIVPLSLEAVRILSGIPR 274

Query: 251 G-KETFF------INNDKQKMNATQFSIWFKAKATKAG-------VNKSAHGVRKFSATI 296
                 +      +    ++  +   +++ K    K G       V+ + H +R  + + 
Sbjct: 275 RIDGQVWGLEDQSVTRAFERAVSRARAVYKKECEEKKGNPDPSFLVDITFHDLRHEATSR 334

Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324
             + G  A ++    G KT      YT 
Sbjct: 335 FFELGFDATKVKEITGHKTYSMLSRYTH 362


>gi|254442472|ref|ZP_05055948.1| site-specific recombinase, phage integrase family protein
           [Verrucomicrobiae bacterium DG1235]
 gi|198256780|gb|EDY81088.1| site-specific recombinase, phage integrase family protein
           [Verrucomicrobiae bacterium DG1235]
          Length = 428

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 60/357 (16%), Positives = 109/357 (30%), Gaps = 48/357 (13%)

Query: 10  FVTKERTRH--GKII----YYFRKGHGRRIR------------LPYPHESTFIPAYMSAL 51
               +R R   GK      YY R  +G  +R                  + F   + +  
Sbjct: 3   HSVAKRIRRIDGKRRLSRTYYLRYRYGEMLRDKWINLGVSTKEAAEAKANEFRREWEAEQ 62

Query: 52  TGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNS---RISFESYFDQIIRKSGD 108
            G    +      +K        + +Y         A  S       +S   ++ ++ G 
Sbjct: 63  AGILLPKPIREGAKKP---FLDHVMDYALDLERRGKAGRSSKGLKQTQSRLKRLSKECGW 119

Query: 109 FDYRKITTKHIRSGVES-RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167
               +++     +     R+ TP +   +L  +     W  R E ++ NP   V +   +
Sbjct: 120 SHLVQVSPDSFVTWRSKQRQLTPRTLNHYLNEVITFLNWLERNERISANPLKRVVKVDER 179

Query: 168 TEG---IRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNN 220
            +G    R +T +++ +  S   E    R+A+    ++GLR  +  +     +    +N+
Sbjct: 180 EDGKTKKRAFTDDELVRILSVSPE--YRRVAYLAAAFTGLRFQELQQLECGDVVFAGENS 237

Query: 221 IFSIK--TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKAT 278
              ++  T K G   ++ L       L             +DK        S   K    
Sbjct: 238 RLLVRGSTTKNGKDASIGLVPALEVALRAYIPEDAQP---SDKVFRMGVPRSRTLKIDLE 294

Query: 279 KAGVNKS--------AHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGA 326
            AGV            H  RK   T+   AG      M+             YT  A
Sbjct: 295 AAGVPYRDARGHVAVFHSFRKTFGTMLQRAGVEERLAMSAMRHSDRRLTNLIYTDTA 351


>gi|256818734|ref|YP_003135801.1| integrase family protein [Cyanothece sp. PCC 8802]
 gi|256592474|gb|ACV03344.1| integrase family protein [Cyanothece sp. PCC 8802]
          Length = 373

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 44/349 (12%), Positives = 96/349 (27%), Gaps = 68/349 (19%)

Query: 48  MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVN-SRISFESYFDQIIRKS 106
           ++A++  TP            T       ++  +      A N +  ++  +  Q +   
Sbjct: 14  LAAMSALTP-SPEPKPILANATQFLSFFDDFLATDVGDGAAANDTLRTYRCHLKQFLGWC 72

Query: 107 GDFDYRKITTKHIRSGVESR----KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162
                  I     +          ++  ++    L+ +R  +   +   Y+  NP + ++
Sbjct: 73  HTNQVHPIEATFAQLKQYRHWLIEQYQQATISLKLSVLRRFYDALLENGYILSNPAMGLK 132

Query: 163 RPKRKTEG---IRPWTKEDMQQFKSFWS-----EGSQPRLAFEFLLYSGLRCSDSCRAGV 214
            P+   +    I     E+M +              + RL    ++  G R  +  R  V
Sbjct: 133 PPREVKDPAAKINYLQVEEMHRLLDALPDDNSVHSLRDRLLISVMVLEGCRTVELHRVNV 192

Query: 215 QHL--QNNIFSIKTQKTGTIITVELPDGFMKLLAM----------TPIGKETFFI----N 258
             +        ++     +I  V L     +LL            T       F+     
Sbjct: 193 GDIVKDGPNVGLRVWAKRSIRVVPLTPDLAQLLRQYLAARRKQGETLTPDTPVFVSIART 252

Query: 259 NDK--------------------------QKMNATQFSIWFKAKATKAGVNK-------- 284
                                        +     +         ++ G  K        
Sbjct: 253 TYGQRLSRRSIRRIVDKYLTAISLKTVPPKPRTEKRLKSSESVAPSQ-GRGKKSRHQSSP 311

Query: 285 ---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
              SAH +R  + T++  AGA+  ++    G         Y   +DR +
Sbjct: 312 RKLSAHSLRHTAGTLALRAGASLRQVQDLLGHSDPRTTVLYAHISDRWQ 360


>gi|323691674|ref|ZP_08105936.1| hypothetical protein HMPREF9475_00798 [Clostridium symbiosum
           WAL-14673]
 gi|323504308|gb|EGB20108.1| hypothetical protein HMPREF9475_00798 [Clostridium symbiosum
           WAL-14673]
          Length = 317

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 44/310 (14%), Positives = 101/310 (32%), Gaps = 47/310 (15%)

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYR 112
           +  + ++I+ P     T+  L   ++ S  +  +  ++   + +     I    G  +  
Sbjct: 2   TQEEMKHIDPPGN--HTISHLCEAWKLSMRYQ-VKPSTFACYATIIQKHIRPSIGTVEME 58

Query: 113 KITTKHIRSGVESRKHTPSSAIQF---LTSMRVLFKWAVRQEYVAINPCLSVE--RPKRK 167
           ++  + +   +  R+    SA      L  ++ + +   R+      P   ++   PK +
Sbjct: 59  EMNNEILSEFILDRQSRGLSANTMRLILFLLKSIIRAGERRGIC---PAEPLDFFLPKDR 115

Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG----LRCSDSCRAGVQHLQ--NNI 221
              ++  ++++ ++  S W  G   R  FE  L       +R  + C    + +     +
Sbjct: 116 GYEMKLLSQDNRRKLLS-WLAGC--RTNFELGLLLSLSTGIRVGELCGVKWEDVDLEEGV 172

Query: 222 FSIKTQ-----------------------KTG-TIITVELPDGFMKLLAMTPIGKETFFI 257
             I+                         KTG +   + LPD  +  L         + +
Sbjct: 173 LHIRRTVSRIRNTDQKNTAAKTVLYIGSPKTGTSQREIPLPDFMIPRLKEKKREAGCYLL 232

Query: 258 NNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTV 316
                 M        FK    K  + + + H +R   A+   + G  +  L    G  +V
Sbjct: 233 TGRTGCMEPRGVQRRFKNLLRKLRLPDVNIHALRHSFASQWIENGFDSKSLSEILGHSSV 292

Query: 317 DQA-ETYTKG 325
               + Y   
Sbjct: 293 KITMDIYVHS 302


>gi|296453370|ref|YP_003660513.1| phage integrase family protein [Bifidobacterium longum subsp.
           longum JDM301]
 gi|296182801|gb|ADG99682.1| phage integrase family protein [Bifidobacterium longum subsp.
           longum JDM301]
          Length = 455

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 64/388 (16%), Positives = 116/388 (29%), Gaps = 71/388 (18%)

Query: 12  TKERTRHGKIIYYF--------RKGH-GRRIRLPYPH---ESTFIPAYMSALTGSTPKRE 59
            + +  HG   YY         RKG  GRR R+  P           +++          
Sbjct: 14  IRVKKVHGGTSYYAEYPDPRPDRKGDDGRRERIRSPFVFSSRQAAEGWLAQQRNRIDGGI 73

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLA--------------VNSRISFESYFDQII-R 104
           +++   +   +     +E R+S  +   A               ++  ++    D ++  
Sbjct: 74  WVDPRDEYEDSASARKAEERRSESFRDYAERWFGGKIARGEIRPSTVRTYRQRLDGVLYP 133

Query: 105 KSGDFDYRKITTKHIRSGVESR------------KHTPS--SAIQFLTSMRVLFKWAVR- 149
             GD   R IT + +    E              K  P   +       +R + + A   
Sbjct: 134 AFGDKAMRDITVEDVERWYEEMGRPRKVDGRPSTKERPRLSTRGNAYGLLRQIMQSACTA 193

Query: 150 -QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD 208
               +  NPC        K +       E +++         + RL      +  LR  +
Sbjct: 194 PNAILDFNPCQIKGGSAHKGKERAVIGPEKVREIADNMP--GKYRLVVLLGFWLSLRMGE 251

Query: 209 SCRAGVQHLQNNIFSIKTQ----------------KTGTIIT-VELPDGFMKLLA----- 246
                 + +  +   ++                  KT   +  + +PDG +  +      
Sbjct: 252 ILALRRRDIDLDGKVVRITHAVTYSKEYGFVDGDPKTEAGVRSIPIPDGLVAEIRKHIDE 311

Query: 247 -MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADA-GAT 303
              P      F       ++ ++    F     KAG  +   HG+R    T  A    AT
Sbjct: 312 YADPGDDGKLFHTATGNYVHHSEVEKAFIKARRKAGCEDVVLHGLRHSGNTYFAQNTNAT 371

Query: 304 AHELMATYGWKTVDQAETYTK-GADRIR 330
             +L A  GW T   A  Y     DR+R
Sbjct: 372 IADLQARGGWSTSSMAAHYMHSSQDRLR 399


>gi|294012827|ref|YP_003546287.1| integrase/recombinase XerC [Sphingobium japonicum UT26S]
 gi|292676157|dbj|BAI97675.1| integrase/recombinase XerC [Sphingobium japonicum UT26S]
          Length = 298

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 41/282 (14%), Positives = 88/282 (31%), Gaps = 34/282 (12%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISF----ESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
             L  ++R+        +V++  ++    E     +    G+     +     ++ + + 
Sbjct: 5   DDLCEQWRRHLALDRRRSVHTVRAYVATAERLLAFLEEHRGEAATAAMLAGIEQADLRAF 64

Query: 127 KHTPS-------SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
                       SA + L+++R   ++   ++  A  P L  + P+ K    RP + ++ 
Sbjct: 65  LTVRRMDGIGNVSAARELSAVRGFLRFVGGED--ARVPML--KGPRVKRGLPRPVSPDEA 120

Query: 180 --------QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
                   +  +  W  G++       L  +GLR  ++       L        T K G 
Sbjct: 121 VALAGDIAETAREEW-IGARDWAVLLLLYGAGLRIGEAMALTGAVLPLGETLRVTGKRGK 179

Query: 232 IITVELPDGFMKLLAM-------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-- 282
              V L     K +                 F       ++        +    + G+  
Sbjct: 180 TRIVPLLPQVRKAMEAYVALCPFGQEKDAPLFRGARGGPLSPALIRRAVQGARGRLGLSD 239

Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             + H +R   AT     GA    L    G  ++   + YT+
Sbjct: 240 RTTPHALRHSFATHLLGRGADLRSLQELLGHASLSSTQIYTQ 281


>gi|257876357|ref|ZP_05656010.1| phage integrase [Enterococcus casseliflavus EC20]
 gi|294619900|ref|ZP_06699276.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium E1679]
 gi|257810523|gb|EEV39343.1| phage integrase [Enterococcus casseliflavus EC20]
 gi|291593837|gb|EFF25335.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium E1679]
          Length = 380

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 50/267 (18%), Positives = 90/267 (33%), Gaps = 45/267 (16%)

Query: 100 DQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL 159
           + I+   G+    KI+  + +  V     T         +   +FK+ V  E    NP  
Sbjct: 98  NHILPAFGELRLDKISVSYCQKQVNEWHKTLKQYGFLRKTTAQIFKFGVAMEVCKDNPMS 157

Query: 160 SVERPKRKTEGIRPW---TKEDMQQFKSFWSEGSQPRLA--FEFLLYSGLRCSDSCRAGV 214
                 RK E  +P    TK+ +Q F     E +  +L   F  L Y+G+R S++     
Sbjct: 158 K-TLLPRKIEEEQPLKFYTKDQLQLFLKNTKENNSVKLYTFFRLLAYTGMRKSEALALQW 216

Query: 215 QHLQNNIFSIKTQKT-----------------GTIITVELPDGFMKLLAMTP-------- 249
           + +     +I   KT                  +  T++L D  +K L +          
Sbjct: 217 EDIDYFNKTITIGKTIAQDEFNQVVLQVPKTKNSSRTIQLDDFTLKQLRIWQQEQMKIMI 276

Query: 250 -------IGKETFFINNDKQKMNATQFSIW----FKAKATKAGVNKSAHGVRKFSATISA 298
                    K+  F  N  +       + W    +K    +  +  + HG R    ++  
Sbjct: 277 LYGYNTNSPKQFLFTTNTNKLYYPQVVNDWLDWIYKKTPMEPQI--TPHGFRHTHCSLLF 334

Query: 299 DAGATAHELMATYGWKTVDQAE-TYTK 324
           ++GA+  E+    G K +      Y  
Sbjct: 335 ESGASIKEVQERLGHKDIKTTMNIYAH 361


>gi|260855044|ref|YP_003228935.1| integrase [Escherichia coli O26:H11 str. 11368]
 gi|257753693|dbj|BAI25195.1| integrase [Escherichia coli O26:H11 str. 11368]
 gi|323153563|gb|EFZ39814.1| phage integrase family protein [Escherichia coli EPECa14]
          Length = 411

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 44/314 (14%), Positives = 86/314 (27%), Gaps = 65/314 (20%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQII------RKSGDFDYRKITTKHIRSGV 123
           T   L   + K      L  N+    +S    +              Y  I         
Sbjct: 82  TFGELCDIWTKIKE-TELTTNTMKKTKSQLKTLRIIICESTLISHIRYSDILNYRNELLH 140

Query: 124 -----------ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
                        +  T  +   ++  +  L ++A +  +++  P   V++ +R      
Sbjct: 141 GETLYLDNPRSNKKGRTVRTVDNYIALLCSLLRFAYQSGFISTKPFEGVKKLQRNRIKPD 200

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
           P +K +           SQ    ++F +YSGLR  +      + +      +  ++  TI
Sbjct: 201 PLSKTEFNALMESEKGQSQN--MWKFAVYSGLRHGELAALAWEDVDLEKGIVNVRRNLTI 258

Query: 233 ITVELPDG----------FMKLLAMTP-----IGKE-----TFFINNDKQK--------- 263
           + +  P                L          G       TF+     +          
Sbjct: 259 LDMFGPPKTNAGIRTVTLLQPALEALKEQYKLTGHHRKSEITFYHREYGRTEKQKLHFVF 318

Query: 264 ------------MNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMA 309
                        + +     + A   +AG+ +    H  R   A     AGA    + +
Sbjct: 319 MPRVCNGKQKPYYSVSSLGARWNAAVKRAGIRRRNPYHT-RHTFACWLLTAGANPAFIAS 377

Query: 310 TYGWKTVDQA-ETY 322
             G +T     E Y
Sbjct: 378 QMGHETAQMVYEIY 391


>gi|227497530|ref|ZP_03927758.1| integrase/recombinase XerD [Actinomyces urogenitalis DSM 15434]
 gi|226832984|gb|EEH65367.1| integrase/recombinase XerD [Actinomyces urogenitalis DSM 15434]
          Length = 167

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 55/157 (35%), Gaps = 12/157 (7%)

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-----ELPDG 240
            +   + +   E L  +G+R S+ C   +  +     +++    G    V          
Sbjct: 1   LALARRDQALVEMLYATGVRVSELCALDLADVDRGERTVRVLGKGNKERVVPYGTPAARA 60

Query: 241 F-----MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSA 294
                 ++     P   +  F+     +++           A +AGV +   HG+R  +A
Sbjct: 61  LEGWWQLRARLARPDSGQALFLGARGGRVDPRTVRQVVHRLAAEAGVPDLGPHGLRHSAA 120

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330
           T     GA    +    G  ++   + YT   A+R+R
Sbjct: 121 THVLSGGADLRSVQELLGHSSLATTQRYTHVSAERLR 157


>gi|205357416|ref|ZP_03223734.1| prophage lambda integrase [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|205321837|gb|EDZ09676.1| prophage lambda integrase [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|320086320|emb|CBY96093.1| Integrase [Salmonella enterica subsp. enterica serovar Weltevreden
           str. 2007-60-3289-1]
          Length = 406

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 56/359 (15%), Positives = 118/359 (32%), Gaps = 52/359 (14%)

Query: 9   PFVTKERT-RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY------- 60
           P +  +   R GKI + ++     R       E         A T    +R         
Sbjct: 39  PNLYCKLDKRTGKIYWQYKHPVSGRFHSLGTDEVEAKKVASEANTIIAEQRTRQVLSVND 98

Query: 61  ---INSPRKKPTTLKWLISEYRKSAHWG----SLAVNSRISFESYFDQIIRKSGDFDYRK 113
                  R+   T+   I +Y +          L  NS               G    + 
Sbjct: 99  RLARMKGRRTDITVTEWIDKYIEIQDERLKHRELRPNSYRQKAKPVRLFREHCGMQYLKD 158

Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMRVL----FKWAVRQEYVAI--NPCLSVERPKRK 167
           I+   I    ++ K       +    +R++    FK A    +V    NP L+ ++P+ +
Sbjct: 159 ISALDISEITDAVKAEGH--NRMAQVVRMVLIDVFKEAQHNGHVPPGYNPALATKQPRNR 216

Query: 168 TEGIRPWTKEDMQQ-FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226
               R  + E+ +  +++   +    +      + +G R  D C    + + +++  ++ 
Sbjct: 217 VTRQR-LSLEEWKTIYEAAEKQEPYLQCGMLLAIITGQRLGDICNMKFKDIWDDMLHVEQ 275

Query: 227 QKTGTIITVELPDGFMKLLAMTPIG-----------------KETFFINNDKQKMNATQF 269
           +KTG+ + + L D   + L +T                    + T    N   +++ +  
Sbjct: 276 EKTGSRLAIPL-DLKCEALGLTLRDVVSKCRDAVISKYLVHFRHTTSQANRGDQVSTSSL 334

Query: 270 SIWFKAKATKAGVNK------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           +  FK    ++G+        + H  R  S  +  + G    +L    G K+    + Y
Sbjct: 335 TSTFKKARDRSGLKWDKGSPPTFHEQRSLSERLYREQGVDTQKL---LGHKSRKMTDKY 390


>gi|153009974|ref|YP_001371189.1| phage integrase family protein [Ochrobactrum anthropi ATCC 49188]
 gi|151561862|gb|ABS15360.1| phage integrase family protein [Ochrobactrum anthropi ATCC 49188]
          Length = 315

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 30/215 (13%), Positives = 68/215 (31%), Gaps = 12/215 (5%)

Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
             +   +  R ++ ++  + + ++  L + A +   +  N    V R K +   IR    
Sbjct: 87  DSVIGSLRERGNSNATINRKMAALSKLLRKAHKMGDI-FNLPEFV-RQKERVGRIRFLEY 144

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLY-SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
           E+ ++  +      +        L  +G R  ++       +Q+   +    K+     V
Sbjct: 145 EEEKRLFAAIKSRCEDSYRLSLFLVDTGCRLGEAIGVTWNDVQDQRVTFWLTKSNRSRNV 204

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS----AHGVRK 291
            L     K   +     +  F       +N  +F   +     + G+        H +R 
Sbjct: 205 PLTRRARKAAHIPHEKLKGPF-----SMLNQVRFRQIWNEAKMEVGLGTDDQVVPHILRH 259

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
             A+     G     +    G +T+     Y   A
Sbjct: 260 TCASRLVRGGIDIRRVQMWLGHQTLQMTMRYAHLA 294


>gi|146301452|ref|YP_001196043.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
 gi|146155870|gb|ABQ06724.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
          Length = 305

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 25/175 (14%), Positives = 55/175 (31%), Gaps = 21/175 (12%)

Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKT 226
           +     + E+++      +E    R         GLR S+     ++ ++    +  +++
Sbjct: 120 KARNTLSVEEIKSLYKN-AENELERALLSVAYGCGLRRSEISALDLKDVKLATGMVVVRS 178

Query: 227 QKTGTIITVELPD------------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274
            K      V + D               + LA     +E FFIN+  ++      +   K
Sbjct: 179 GKNSKRREVPMSDTVMGYLKKYIQEERSQRLAGKNQTEEAFFINSKGRRSTGENLNDILK 238

Query: 275 AKATKAG------VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
               +         + + H +R   A   A+  A    +    G   ++    Y 
Sbjct: 239 KMIEQTKNFELIQKDITLHCLRHSIANHLAENNAGIDFIRRFLGHSDINTTYIYA 293


>gi|94495392|ref|ZP_01301972.1| phage integrase [Sphingomonas sp. SKA58]
 gi|94424780|gb|EAT09801.1| phage integrase [Sphingomonas sp. SKA58]
          Length = 312

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 39/281 (13%), Positives = 92/281 (32%), Gaps = 32/281 (11%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD--------YRKITTKHIRSG 122
             LI  +R         +V++  ++++  ++++                  +    +R+ 
Sbjct: 19  SALIDRWRAHLALDRRRSVHTVRAYQATAERLVAFLEQHRGEAVTQAMLASLEQADLRAF 78

Query: 123 VESRK---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
           + SR+       SA + L+++R   ++   ++         ++ P+ K    RP + ++ 
Sbjct: 79  LTSRRMDGIGNLSAARELSAVRGFLRFVGGEDARPP----RLKGPRVKRGLPRPVSPDEA 134

Query: 180 QQFKSFWSE-------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
               +  +E       G++       L  +GLR  ++                T K G  
Sbjct: 135 MALAADIAETAREGWIGARDWAVLLLLYGAGLRIGEAMGLTGAVWPLGDTLRVTGKRGKT 194

Query: 233 ITVELPDGFMKLL------AMTPIGKET-FFINNDKQKMNATQFSIWFKAKATKAGV--N 283
             V L       +         P+ ++   F       ++        +    + G+   
Sbjct: 195 RLVPLLPQLRAAIESYVAACPYPLERDAPLFRGARGGPLSPALIRRAVQGARGRLGLSER 254

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            + H +R   AT     GA    L    G  ++   + YT+
Sbjct: 255 TTPHALRHSFATHLLGRGADLRSLQELLGHASLSSTQIYTQ 295


>gi|254229956|ref|ZP_04923358.1| Integrase [Vibrio sp. Ex25]
 gi|262394673|ref|YP_003286527.1| integrase [Vibrio sp. Ex25]
 gi|151937525|gb|EDN56381.1| Integrase [Vibrio sp. Ex25]
 gi|262338267|gb|ACY52062.1| integrase [Vibrio sp. Ex25]
          Length = 566

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 43/346 (12%), Positives = 96/346 (27%), Gaps = 60/346 (17%)

Query: 55  TPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI 114
           +  +      +    ++  +   Y +S         +        +++I   GD D  ++
Sbjct: 216 SANKRQPKRQKASQYSISNVFKRYHQSEILKDKDAKALYEAGLQIERLIEVIGDLDVTEV 275

Query: 115 TTKHIRSGVESRKHTP-----------------------------SSAIQFLTSMRVLFK 145
           T  HI    ++    P                             ++    L    V+F 
Sbjct: 276 TRAHIVEFRDTLLQLPKSKIASIRNRPLLEQIELVKIQGLETLSATTVKNCLRKTSVVFS 335

Query: 146 WAVRQEYVAINPCLSVER----PKRKTEGIRPWTKEDMQQFK---------SFWSEGSQP 192
           +A+    +  NP + V       K +    + +T  ++ +           +    G   
Sbjct: 336 YAIELGIIDSNPHVGVRVATAEKKTEASEGKGYTDSEILRLFQADVFNDANARKPYGMAC 395

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSI---------KTQKTGTIITVELPDGF 241
                   Y+G R  +  +     +   ++               +   ++  V +P   
Sbjct: 396 YWVPLLCRYTGARLEEMSQLHKSDVSQSDSGIHYLNIRRGEGQSVKNNSSLRHVPIPAHL 455

Query: 242 MKL--LAMTPIGKETFF--INNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSAT 295
           ++L  L          F  +  +K    +   S W+       G++ +  AH  R    T
Sbjct: 456 IELGFLDYVAESGGFLFPELKENKYGKKSAALSKWWGQTVRSLGIHTTQPAHAFRHTFKT 515

Query: 296 ISADAGATAHELMATYGWKTVDQAETY-TKGADRIRLGIKNSRRIS 340
                G       A  G        +Y T   +  +  I    R++
Sbjct: 516 ALRRLGIADTVSDAITGHTPAGVGGSYGTVELETKKEAIDRLPRLA 561


>gi|329965392|ref|ZP_08302316.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
 gi|328522184|gb|EGF49298.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
          Length = 410

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 41/287 (14%), Positives = 103/287 (35%), Gaps = 30/287 (10%)

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS------GDFDYRKIT 115
           +SP+    T      EYR+       A  + + +E     ++          D   + I 
Sbjct: 107 DSPKMLIETFNEHNQEYRELMD-KEYAKGTVLRYERTVRYLVEFMREQYNCADIPLKSIN 165

Query: 116 ---TKHIRSGVESRKHTPSSA-IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
                     ++++K    +A +++L +++ + K A+ ++++  +P   +   K+     
Sbjct: 166 YEFITKFEHFIKTQKGCAQNATVKYLKNLKKITKTAILKKWINEDPFADI-HFKQTKTNR 224

Query: 172 RPWTKEDMQQFKSFWSEGSQ---PRLAFEFLLYSGLRCSDSCRAGVQHL---QNNIFSIK 225
               + ++++  +   +  +    R  F F  ++GL  +D      +H+    +  + I+
Sbjct: 225 DFLNESELRRIIAKDIDIERLQTVRDIFIFCSFTGLAFTDVKHLKAEHIVQADDGRWWIR 284

Query: 226 --TQKTGTIITVELPDG----FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK 279
              +KT  +  + L D       K  +     +  F +       +  + + + K  A  
Sbjct: 285 KAREKTDNMCDIPLLDIPRLILEKYKSRPGYSERGFLL----PVPSNQRMNGYLKEIADI 340

Query: 280 AGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             + K  S H  R   A+++     +   +    G   +     Y K
Sbjct: 341 CHIKKKLSTHIARHTFASLAIANKVSLESIAKMLGHTDIRTTRIYAK 387


>gi|85713921|ref|ZP_01044910.1| probable integrase protein [Nitrobacter sp. Nb-311A]
 gi|85699047|gb|EAQ36915.1| probable integrase protein [Nitrobacter sp. Nb-311A]
          Length = 422

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 61/376 (16%), Positives = 117/376 (31%), Gaps = 50/376 (13%)

Query: 10  FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
           F+ + R  +G+     R   GR   L          A   +L       +   + +    
Sbjct: 41  FLVQYRNANGRSR---RLTVGRYGVLTV---EEARRAAKISLADVLKGVDPAENKKLDRG 94

Query: 70  --TLKWLISEYRKSAH----WGSLAVNSRI-----SFESYFDQIIRKSGDFDYRKITTKH 118
             T++ L  EY   A             R              I+   G    + +TT  
Sbjct: 95  AITIETLCREYLDKAERGLILTRRGEAKRRSTIYTDKGRVERHIVPILGKRTVKDVTTAD 154

Query: 119 IR------------SGVESRKHTPS-------SAIQFLTSMRVLFKWAVRQEYVAINPCL 159
           IR            + ++++K   +       +A + +  +  +  +AV + Y   NP  
Sbjct: 155 IRRFQQSVISGKTAADIKTKKRGRAIVTGGKGTAARTMGLLGGILSYAVNEGYRPDNPAR 214

Query: 160 SVERPKRKTEGIRPWTKEDMQQFKSFWSEGS------QPRLAFEFLLYSGLRCSDSCRAG 213
            + RPK +T   R       +      +         QP L    +  +G R  +  R  
Sbjct: 215 GIIRPKDETREWR-LDDAGYRALGKKLTAAEANAVNWQPILIMRVIALTGCRRGEIERLL 273

Query: 214 VQHLQNNIFSIKTQ--KTGTIITVELPDGFMKLL--AMTPIGKETFFINNDKQKMNATQF 269
              +     +++    KTG  I   +    + +L  A      +  F     +K      
Sbjct: 274 KTEIDFARSALRLGDSKTGKSIR-PIGSAAIAVLKQACEKSKSKYVFSALTNEKKRYVGL 332

Query: 270 SIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
                +    A    + HG+R   ++ + D G +   + A  G       E Y    D  
Sbjct: 333 PKALASIVGDAVPGLTPHGLRHSFSSTAEDLGFSLPTIKALLGHAGGSVTEGYIHKIDTA 392

Query: 330 RLGIKNSRRISSVVDS 345
            +    + RI+S +++
Sbjct: 393 LVA--AADRIASHIET 406


>gi|317477189|ref|ZP_07936430.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
 gi|316906732|gb|EFV28445.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
          Length = 421

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 42/269 (15%), Positives = 93/269 (34%), Gaps = 43/269 (15%)

Query: 90  NSRISFESYFDQIIRKSGDFDYRKITTK-------HIRSGVESRKHTPSSAIQFLTSMRV 142
            ++  +   +  I         R               + ++    + ++      S++ 
Sbjct: 138 KTKREYVRTYYYIQEYEKKRKIRLEFRSINQSFFNDFVAFLQELGLSTNTIWHKTVSLKA 197

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEF 198
           + K A  QE          +    +++ I   +++++     F    S    + R  F  
Sbjct: 198 VMKAANEQELTDNTKYQLFKNVSEESQAI-ALSEDELDILARFDFSHSARLERTRDLFLV 256

Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFIN 258
             ++GLR SD  R   +++++ + +I+ QKT   +T+ L   F+++           +  
Sbjct: 257 GCWTGLRFSDFTRIREENIKDGMITIQQQKTNEFVTIPLHPVFLRIWEK--------YNG 308

Query: 259 NDKQKMNATQFSIWFKAKATKAGVNK-----------------------SAHGVRKFSAT 295
           N    ++  +F+   K    +AG+ +                       S+H  R+  AT
Sbjct: 309 NLPGNISNQKFNDNLKDVCREAGLTEHVMKSITKGGKKQTTVYEKWQLVSSHTARRSFAT 368

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTK 324
               +G  +  +M   G KT      Y K
Sbjct: 369 NLYKSGFPSISIMQITGHKTESSFLKYIK 397


>gi|270265394|ref|ZP_06193654.1| DNA integration/recombination/invertion protein [Serratia odorifera
           4Rx13]
 gi|270040649|gb|EFA13753.1| DNA integration/recombination/invertion protein [Serratia odorifera
           4Rx13]
          Length = 287

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 51/263 (19%), Positives = 84/263 (31%), Gaps = 25/263 (9%)

Query: 89  VNSRISFESYFDQIIRKSGDFDYRKITTKHIRS-GVESRKHTPSSAIQFLTSMRVLFKWA 147
             ++  +     +++   GD     IT   I         H P SA +F  ++   F+ A
Sbjct: 28  EKTKSDYTRMIRRVLNFWGDETLSAITVADIADKIHHIAAHHPHSARRFRLNLCDFFQEA 87

Query: 148 VRQEYVAI--NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR--LAFEFLLYSG 203
            R   + +  NP L    P       R  T  +           +     +A    L + 
Sbjct: 88  QRDGLIPLGYNPALVTREPFTPVTTNR-LTLSEWSAIFCRAESVAPRYFVIAMLLALVAA 146

Query: 204 LRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG-------FMKLLAMTPIGKETFF 256
            R  D       H+ +    I+ QKTG +I + L             ++AM P       
Sbjct: 147 QRRGDIVSFHSTHVFDGHLHIRQQKTGEMIALPLNLRLNALDITLADVIAMCPPSGL-LL 205

Query: 257 INNDKQKMNATQFSIWFKAKATKA------GVNKSAHGVRKFSATISADAGATAHELMAT 310
             ++ + +N    S WFK    +       G   S    R  S  +  + G     L   
Sbjct: 206 QQSNGKPVNTWSLSYWFKRCRDETIPRPKVGRPPSFREQRSLSERLYREEGIDTRTL--- 262

Query: 311 YGWKTVDQAETY--TKGADRIRL 331
            G +     + Y   +G D  RL
Sbjct: 263 LGHRHQSMTDQYNSLRGRDYRRL 285


>gi|260588402|ref|ZP_05854315.1| site-specific recombinase, phage integrase family [Blautia hansenii
           DSM 20583]
 gi|260541276|gb|EEX21845.1| site-specific recombinase, phage integrase family [Blautia hansenii
           DSM 20583]
          Length = 337

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 46/304 (15%), Positives = 92/304 (30%), Gaps = 49/304 (16%)

Query: 73  WLISEYRKSAHWGSLAVNSRISF----ESYFDQIIR---------KSGDFDYRKITTKHI 119
           WL   Y   A+  +    ++  +    E + + I           K  +     I     
Sbjct: 25  WLRDYYYSMANNTA---ATKRKYLGDVEMFLNSIADGMGVEIAELKLENITTSVINRYFT 81

Query: 120 RSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPC-LSVERPKRK-TEGIRPW 174
           +   E     P   ++    ++S+   F +  R EY++ NP   +++RP  K  + I   
Sbjct: 82  KRNQELISGKPISNATIATQISSLHNFFDFLYRFEYISENPMEKAIKRPSVKLKDEISYL 141

Query: 175 TKEDMQQFKSFWSEG--------------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-N 219
           T++++       +EG               + RL F   L +G R S      V  +   
Sbjct: 142 TEDEISIIIKNLNEGVGSKHARTSQKKYQDRDRLLFLIPLSTGCRVSALSEINVSDIDFE 201

Query: 220 NIFSIKTQKTGTIITVELPDGFMKLLAM---------TPIGKETFFINNDKQKMNATQFS 270
           N       K       E+    M ++                +  F++            
Sbjct: 202 NCLIHTIDKRDKEFEYEVTKELMDIIRRWCDRRKLIPGIEATDALFVSKKSDGCKRLGVG 261

Query: 271 IWFKAKAT-KAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
              K  A    G+++  S H +R+   T         +      G  +    + Y    +
Sbjct: 262 AIQKIIAKYSEGIDRKISPHELRRTFGTNVYRMKGDIYLTSELLGHSSPTTTKRYA-SVN 320

Query: 328 RIRL 331
           +  +
Sbjct: 321 KQEM 324


>gi|160934939|ref|ZP_02082325.1| hypothetical protein CLOLEP_03814 [Clostridium leptum DSM 753]
 gi|156866392|gb|EDO59764.1| hypothetical protein CLOLEP_03814 [Clostridium leptum DSM 753]
          Length = 345

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 43/308 (13%), Positives = 96/308 (31%), Gaps = 56/308 (18%)

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK 117
            E+I + +    T   L++E ++S         +         +   +        +  +
Sbjct: 11  AEFITAQKSWQGTATDLLTEMKES-------EITSNVVTKLLARFSAEV-------LVPR 56

Query: 118 HIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
           HI+     +  T  P+S I +   +    K+A++ + V+ N  + V+RPK+         
Sbjct: 57  HIQQFYTEKLKTVKPNSVIHYHAVIHQALKYALKTDLVSQNVAVKVDRPKKNDFQPVFLD 116

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------ 229
             + Q         ++  L      + GLR  + C      +     ++  ++T      
Sbjct: 117 VAERQHLFEVIKC-TKLELPVLVAAFYGLRRGEVCGLKWDAIDFERGTLTVKRTVTSIQL 175

Query: 230 ---------------GTIITVEL----PDGFMKLLAMTPIGKET------------FFIN 258
                           ++ T+ L     + F K+     + K+              F++
Sbjct: 176 DGKTQMIEQESAKTKSSMRTLPLVSSFKEYFQKVKEAQALNKKVCGNCYNYEYDGFVFVD 235

Query: 259 NDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD 317
                +     +  F A   + G+ K   H +R   A++    G    ++    G     
Sbjct: 236 EMGDLLKPDCLTTQFPAFIQRHGMKKMRFHDLRHSCASLLLANGVHLKQIQDWLGHSDFS 295

Query: 318 QAE-TYTK 324
                Y  
Sbjct: 296 TTANIYAH 303


>gi|21243021|ref|NP_642603.1| phage-related integrase [Xanthomonas axonopodis pv. citri str. 306]
 gi|21108530|gb|AAM37139.1| phage-related integrase [Xanthomonas axonopodis pv. citri str. 306]
          Length = 408

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 45/305 (14%), Positives = 106/305 (34%), Gaps = 26/305 (8%)

Query: 49  SALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSG 107
           +A      ++    +  K   T      ++ +      +A ++R    S +++ +  K G
Sbjct: 85  AAGKSPAKEKARDKARVKDAETFGAWSEKWLRGYQ---MADSTRDMRRSVYERELKPKFG 141

Query: 108 DFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165
           +    +IT + +R+  ++   +  P++A+     M  +++WA+ +     NP   V    
Sbjct: 142 NQKLVEITHEDLRALTDAIVERGAPATAVHAREVMSQVYRWAIERGQKVANPAELVRPTT 201

Query: 166 RKT--EGIRPWTKEDMQQFKSFWS-EGSQP--RLAFEFLLYSGLRCSDSCRAGVQ--HLQ 218
                   R  T +++     +    G+ P  R A + LL + +R S+   A     +  
Sbjct: 202 IAKFEPRDRALTPDEIGLMYQYMERIGTTPSIRAAAKLLLLTMVRKSELTNATWSEINFS 261

Query: 219 NNIFSIKTQ--KTGTIITVELPDGFMKLLAMTPI---GKETFFINNDKQ--KMNATQFSI 271
           + +++I  +  K      V L    + +         G +    +       M++   + 
Sbjct: 262 DALWTIPKERMKRRNPHLVFLSRQALDIFIALKTFAGGSDYVLPSRYDSDLPMSSATLNQ 321

Query: 272 WFKAKATKAGVNKS------AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
                   A            H +R+ ++T+  +AG     +      +       Y K 
Sbjct: 322 VLTLTYRLAQKEGKSLPKFGPHDLRRTASTLLHEAGYNTDWIEKCLAHEQKGVRAVYNKA 381

Query: 326 ADRIR 330
             R +
Sbjct: 382 EYREQ 386


>gi|320536868|ref|ZP_08036862.1| site-specific recombinase, phage integrase family [Treponema
           phagedenis F0421]
 gi|320146284|gb|EFW37906.1| site-specific recombinase, phage integrase family [Treponema
           phagedenis F0421]
          Length = 428

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 46/350 (13%), Positives = 102/350 (29%), Gaps = 64/350 (18%)

Query: 48  MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFE----------- 96
           +  L      + Y+        +    + +Y    +  +L    R               
Sbjct: 87  LKILQKKGLLKTYVLPDATNDISFIDYLKQYWDWDNSEALKEKRRKEKSIHKTYVYIQNT 146

Query: 97  SYFDQIIRKSGDFDYRKITTKHIRSGVE----SRKHTPSSAIQFLTSMRVLFKWAVRQEY 152
                 +    D     +T K  ++ ++        +  +    L + R   K+A   E 
Sbjct: 147 RIDRYYVSFFKDKALGALTKKDFKNFIDIVLQPLNISFGTKNNILRTARTALKYAYDNEI 206

Query: 153 VAINPCLSVERPKRKTEGIRPWTKEDMQQ-FKSFWSEGSQPRLAFEFLLYSGLRCSDSCR 211
           +  +    +     KT+       E ++  F++ W++  +  LA    + +GLR  +   
Sbjct: 207 IQDDIMAGLVFFGGKTKKRDILPPETVRAVFQAKWNDR-RAYLANLLAMITGLRVGEVQG 265

Query: 212 AGVQHLQNNIFSIKTQ----------KTGTIITVELPDGFMKLLAMTPIGKETFFINNDK 261
              + L  +   ++            K      V +P   ++ L           +NN  
Sbjct: 266 LRRKDLGESCIYLRNSWSPIDKLKVPKNTEPRIVVVPRFLIQSLID--------LVNNTP 317

Query: 262 QKMNATQFSIWFKAKAT------------KAGV-----------NKSAHGVRKFSATISA 298
              +   +  W  A+A             +A +               HG R F A+   
Sbjct: 318 HPYSEDNYVFWSTARADNPIDRKLILLELRAALQNIGMSKEESEKYCFHGWRHFYASHM- 376

Query: 299 DAGATAHE-LMATYGWKTVDQAETYTK---GADRIRLGIKNSRRISSVVD 344
             G    + L +  G KT+     Y+      D  ++    +    +++ 
Sbjct: 377 -KGKIEDKLLQSQTGHKTLSMLNHYSDHEMQDDFQKIAKAQNDTFGNLLP 425


>gi|227484863|ref|ZP_03915179.1| possible phage integrase [Anaerococcus lactolyticus ATCC 51172]
 gi|227237223|gb|EEI87238.1| possible phage integrase [Anaerococcus lactolyticus ATCC 51172]
          Length = 377

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 62/365 (16%), Positives = 123/365 (33%), Gaps = 64/365 (17%)

Query: 13  KERTRHGKIIYYFRK------GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
             R ++G++ Y F          G+ IR    + S F     + L  +  + E +   + 
Sbjct: 5   SYRDKNGELRYKFNAYLGTDDITGKEIR---TNRSGFTSKKQAELAYANLRNENLRRKKN 61

Query: 67  KPTTLK-----WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121
              T K     WL   Y K+  +     + + +   +   I    G+   + ITT  ++ 
Sbjct: 62  P--TFKEIGERWL-ELYSKTVKYS----SYQRTKSLFNTHIYPFIGNKLLKSITTAMLQE 114

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK------TEGIRPWT 175
               +    +S  +    ++ +F +A+ ++ V  NP LSV  P          E I  W 
Sbjct: 115 LTNKKSKELASFSKINAQIKRVFDYAISRDIVDYNPALSVIYPITNVNSVDRYESIEFWE 174

Query: 176 KEDMQQFKSFWSEGSQPRLAFE---FLLYSGLRCSDSCRAGVQHLQ-------------- 218
           K+++++F +   +     + F     L Y+G+R S+        +               
Sbjct: 175 KDELKEFLTACKK-DLDFMWFCYFWILSYTGMRKSELQALEWADIDFNRRTININKSLSV 233

Query: 219 --NNIFSIKTQKTGTIITVE---------LPDGFM---KLLAMTPIGKET---FFINNDK 261
             +N   I + KT     +          L D      ++   T I  +T    F +   
Sbjct: 234 YKDNKKFISSTKTKNSTRIITIDSITVKLLLDWKQQQSEIYKKTVIKGKTQKYVFTDKSL 293

Query: 262 QKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA- 319
           +  +       F        + K   H +R   A++  +AG    ++    G   ++   
Sbjct: 294 ELTSHNAPRKRFLRVLKNNNLRKIRLHSLRHTHASLCFEAGMDIKDVQHRLGHSNIETTL 353

Query: 320 ETYTK 324
             Y  
Sbjct: 354 NIYVH 358


>gi|239815112|ref|YP_002944022.1| integrase family protein [Variovorax paradoxus S110]
 gi|239801689|gb|ACS18756.1| integrase family protein [Variovorax paradoxus S110]
          Length = 405

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 45/297 (15%), Positives = 90/297 (30%), Gaps = 37/297 (12%)

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK 117
                S  K PTT   LI  +         A   R S     D +  K G    + +T +
Sbjct: 48  EPATRSKVKDPTTFGDLIDLHVTDMKEVLRAP--RRSKAFTLDALNTKLGKLKLKDLTRE 105

Query: 118 HIR---SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV-------ERPKRK 167
            +             P +    +  ++++   A    +    P   +       +R    
Sbjct: 106 RLIQFGKDRAKEGAGPVTISMDIGYIKLVVSHAAAV-HGVRVPVEPIDLARIALKRLGLV 164

Query: 168 TEGIRPW---TKEDMQQFKSFWSEGSQP----RLAFEFLLYSGLRCSDSCRAGVQHLQNN 220
            +G       T +++Q    +++  S+          F + + +R  + CR   + +   
Sbjct: 165 GKGRERDRRPTLDELQALADYFASNSRQIIPLGRIMRFAVATAMRQDEICRIRWEDIDAK 224

Query: 221 IFSIKTQ-------KTGTIITVELPD-----GFMKLLAMTPIGKETFFINNDKQKMNATQ 268
             ++  +       K G    V L D      +  L    P    +  +       N   
Sbjct: 225 TRTVIVRDRKDPRDKNGNDQKVPLLDVTGFDAWAILEEQKPFSGNSSLVF----PYNGRS 280

Query: 269 FSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
               F+    +  + +   H +R  +A+   +AG T  +     G K     + YT 
Sbjct: 281 VGTAFRRACKELKIKDLKFHDLRHEAASRLFEAGFTIEQAALVTGHKDWKMLKRYTH 337


>gi|189463335|ref|ZP_03012120.1| hypothetical protein BACCOP_04052 [Bacteroides coprocola DSM 17136]
 gi|189429954|gb|EDU98938.1| hypothetical protein BACCOP_04052 [Bacteroides coprocola DSM 17136]
          Length = 267

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 43/282 (15%), Positives = 94/282 (33%), Gaps = 27/282 (9%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           ++++++      +LA N+  S+       +   G+ + + +       G       P + 
Sbjct: 1   MVTKFKNYLAKTNLAKNTVTSYVWTVQYFLNHYGEVNKKNLLA---YKGYLVENFKPQTV 57

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI--RPWTKEDMQQFKSFWSEGSQ 191
              L  +    ++  +++         V+  K + +       +  D +  K+       
Sbjct: 58  NLRLQGINKFLEFTKQEKL-------KVKFVKVQQKNFLENVISDADYKFLKARLKADGY 110

Query: 192 PRLAFE--FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM----KLL 245
               F   F+  +G R S+      +H++     +   K G I  + +P        K L
Sbjct: 111 EEWYFIVWFMAATGARVSELLHIKAEHIKVGYLDL-YSKGGKIRRLYIPKNLRTEAEKWL 169

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGA 302
               +     F+N   Q++     +   K  A K G+NK     H  R   A    D   
Sbjct: 170 KSQGLTSGYIFLNRFGQRITTRGIASQLKHFAEKYGMNKEVVYPHSFRHRFAKNFLDRFN 229

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
               L    G ++++    Y +     R   +  + +  VV+
Sbjct: 230 DLALLADLMGHESIETTRIYLR-----RTASEQQKIVDKVVN 266


>gi|194449832|ref|YP_002047249.1| phage integrase family protein [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194408136|gb|ACF68355.1| phage integrase family protein [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
          Length = 345

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 33/216 (15%), Positives = 65/216 (30%), Gaps = 20/216 (9%)

Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTK 176
           H        + +P +          +F    R   + A NP  +V + + +   +   T 
Sbjct: 121 HFARTKRVAQVSPRTMNLEHAYFLAVFNELKRLGEWDAPNPLENVRQFRTEESEMAYLTG 180

Query: 177 EDMQQFKSFWSEGSQPRLAF--EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234
           E + +        S   L    +  L +G R  ++ +     +     +    K     T
Sbjct: 181 EQIDRLLEECRVSSAKDLEMIVKICLSTGARWGEAEKLKRSQITAGKITFIKTKGKRNRT 240

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA----HGVR 290
           + L     +++A  P      F          +     F++   +AG++  A    H +R
Sbjct: 241 IPLD---TEIIAELPKKNGALF----------SPCYYAFRSALARAGIDLPAGQLTHVLR 287

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
              A+     G     L    G   +     Y   A
Sbjct: 288 HTFASHFMMNGGNILVLQKILGHTDIKMTMRYAHFA 323


>gi|331003766|ref|ZP_08327260.1| hypothetical protein HMPREF0491_02122 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330412149|gb|EGG91544.1| hypothetical protein HMPREF0491_02122 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 396

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 42/295 (14%), Positives = 81/295 (27%), Gaps = 46/295 (15%)

Query: 74  LISEYRKSAHWG-SLAVNSRISFESYFDQII-RKSGDFDYRKITTKHIRSGVESRKHTPS 131
           +   Y K      ++   ++   +     +     G      +     +      K    
Sbjct: 84  VCQLYEKHIRNHANVRHGTKQGRKQLMRILEKDTIGACSIENVKMSDAKEWALRMKEKGY 143

Query: 132 S---AIQFLTSMRVLFKWAVRQEYVAINPCLS-----VERPKRKTEGIRPWTKEDMQQFK 183
           S         S++  F  A++ + +  NP        +E        + P  +E +  F 
Sbjct: 144 SFITISNHKRSLKAAFYTAIQDDCIRKNPFDFHINTVIEDDTEPKIPLSPMQEESLLSFV 203

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--------NNIF--------SIKTQ 227
                  +       LL +GLR S+ C      +         ++           I+T 
Sbjct: 204 KSDKVYYKYYDELIILLGTGLRISEFCGLTDSDIDFENRTINVDHQLQYSGKKSYRIETP 263

Query: 228 KTGTIIT-VELPD----GFMKLLAMTPIGKET-------FFINNDKQKMNATQFSIWFKA 275
           KT   I  + + D       +++        T        F+  +    N   + I F+ 
Sbjct: 264 KTENGIRKIPMSDRVLEALQRVMQNRRKSDFTVDGYTGFLFLTRNGTPQNYINYDIMFRK 323

Query: 276 KATKAGVNK--------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
              K             + H +R    T  A+AG     L    G   +     Y
Sbjct: 324 LVEKYNKKHEEVLPVVTTPHTLRHTFCTNMANAGMNPKALQYLIGHANITMTLNY 378


>gi|319937974|ref|ZP_08012374.1| hypothetical protein HMPREF9488_03210 [Coprobacillus sp. 29_1]
 gi|319806880|gb|EFW03519.1| hypothetical protein HMPREF9488_03210 [Coprobacillus sp. 29_1]
          Length = 324

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 51/296 (17%), Positives = 91/296 (30%), Gaps = 43/296 (14%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISF-ESYFDQIIRKSGDFDYRKITTKHIRSGVE---- 124
           TL  L+ ++       +L + S  ++   Y   I    G      I    +         
Sbjct: 6   TLDELVIQHENIMK-NTLKLASLTAYKRRYIQYIQPYFGTSAISSINLDRLLQWWSDMTS 64

Query: 125 --SRKHTPSSAIQFLTSMRVLFK----WAVRQEYVAINPCLSVERPKRKTEGI----RPW 174
             SR +   S      S+R  F     +AV   Y+A NP   + + K   E        W
Sbjct: 65  LKSRNNKNYSTNTLNCSIRGTFNAYMNFAVNMGYIAQNPLSLIPQYKNPNEVHMNKNNYW 124

Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--------NNIFSIKT 226
           T  +   F S           F  L ++G+R  +        +         N      +
Sbjct: 125 TSNEFNNFLSTVD-NLLYYSLFYILFFTGMRIGEVLSLQWNDIDFSRNKLYINKTLRYIS 183

Query: 227 QKTGTIITVE-----------------LPDGFMKLLAMTPIGKETFFINNDKQKMNATQF 269
           ++ G II+                   L D         P  K + F+  +   +     
Sbjct: 184 KQKGYIISPPKSWRSQRCIELTDGCINLLDELFCTYETYPNFKMSNFVFGNSCFLKYPTI 243

Query: 270 SIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            + F    +K+ V   + HG+R   A++  +A    + +    G    +  +TY  
Sbjct: 244 RVNFMKYISKSHVKSITIHGLRHSHASMLINANVPDYLIADHLGHSVNELYKTYAH 299


>gi|300856827|ref|YP_003781811.1| putative phage integrase [Clostridium ljungdahlii DSM 13528]
 gi|300436942|gb|ADK16709.1| predicted phage integrase [Clostridium ljungdahlii DSM 13528]
          Length = 391

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 49/339 (14%), Positives = 103/339 (30%), Gaps = 49/339 (14%)

Query: 32  RIRLPYPHESTFIPAYMSALTGSTPKREYINSP----RKKPTTLKWLISEYRKSAHWGSL 87
           + R+    +S F     +   G   + E  +      +         I ++  +     L
Sbjct: 30  KERIRET-DSGFTTKKEARAAGRKKEIELKDKTTLGFKNNKIKFSKFIVDWLNTIK-PQL 87

Query: 88  AVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRSGV----ESRKHTPSSAIQFLTSMRV 142
           A ++ + ++   D+I I   GD    KI    I +          ++ ++  Q+   +  
Sbjct: 88  ANSTWVRYKIAVDKIMIPALGDKYLDKIKPSDINAMYLHCTNDLGNSTTTIRQYHWILSK 147

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202
            FK A+R + +  +   +++ PK+    +  + K+ +              +       +
Sbjct: 148 AFKNALRWKIIDYDIMTTIDPPKKAKRELTVYNKDQLFLLLDRIK-NLTCYMPVLLSSTT 206

Query: 203 GLRCSDSCRAGVQHL--QNNIFSIKTQ-------------KTG-TIITVELPD----GFM 242
           G+R  + C    + +  ++    I  Q             KT  +   + L D    G  
Sbjct: 207 GMRLGELCGLRWKDVNLKDKEIYITRQLQKVDGELQLLELKTPTSKRKIPLLDYTIKGLE 266

Query: 243 KLLAMTPIGKET---------FFINNDKQKM----NATQFSIWFKAK--ATKAGVNK-SA 286
            L  +    K                D         +  ++   K      K  +     
Sbjct: 267 DLKQIQEYNKSKNENYDKRSFVICKEDGSPYEPNYVSKNYTRVMKQYNVCKKLNIPYIRF 326

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
           H +R   AT+   A      +    G  TV     TY+ 
Sbjct: 327 HDLRHTYATMLLVANTNPKVVSELMGHSTVSMTLNTYSH 365


>gi|293389996|ref|ZP_06634330.1| putative integrase [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|290950530|gb|EFE00649.1| putative integrase [Aggregatibacter actinomycetemcomitans D7S-1]
          Length = 363

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 50/318 (15%), Positives = 104/318 (32%), Gaps = 37/318 (11%)

Query: 23  YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRK-- 80
           +  +       +           A+ +A+       EY + P     T   LI +Y +  
Sbjct: 41  WRVQIRRKGVNKSKTFRTKAEAQAWANAIESQIAAGEYSDVP---DITFADLIHKYVREI 97

Query: 81  SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLT 138
           +    S    +        D      G      +  K      + R     P+S ++ L 
Sbjct: 98  TPQKKSARHETLR-LHRMAD---MPIGKVRLVDLCLKDFEQWRDERLKSIKPASMLRELN 153

Query: 139 SMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQ--FKSFWSEGSQPR-- 193
           ++  +   AV + +Y+  N    + +P    E  R +++ ++Q+  F S       P   
Sbjct: 154 TVSNIITVAVEKWQYLKKNCIKGLAKPTGIKERTRRYSESELQRLIFVSGCDLSYPPHNV 213

Query: 194 -----LAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKLLA 246
                 A  F + + +R  + C A   +L  + ++  I T K G    V L +  M++L 
Sbjct: 214 INRVGAAILFAIETAMRAGEICNATWANLNLKQHLLHIPTSKNGYPRDVPLSNKTMEILN 273

Query: 247 MTP----IGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISAD 299
                     +  F      ++ +      F+     AG+   +   H  R+ + +  + 
Sbjct: 274 HLAQVKSADDDHIF------QLQSRSLDTIFRKIKENAGLDEADLHFHDTRREALSRLSK 327

Query: 300 AGATAHELMATYGWKTVD 317
                  L    G + + 
Sbjct: 328 K-VDVMTLAKISGHRDIK 344


>gi|289423763|ref|ZP_06425558.1| integrase family protein [Peptostreptococcus anaerobius 653-L]
 gi|289155802|gb|EFD04472.1| integrase family protein [Peptostreptococcus anaerobius 653-L]
          Length = 377

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 50/344 (14%), Positives = 106/344 (30%), Gaps = 56/344 (16%)

Query: 41  STFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS-EYRKSAHWGSLAVNSRISFE--- 96
            +F+  Y   L G+                L +LI  +   SA   S++  S   F+   
Sbjct: 34  PSFLRDYFVYLRGAVSVTTRRAYLMDIKFFLDYLIDTDLYTSA--KSVSDISIDDFKEIG 91

Query: 97  -SYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI 155
               +  I    +  Y+ +    +     ++     S  +  +S+  +FK+  R E +  
Sbjct: 92  ARDINLFIGDYCNRYYKNVNNDRVLYENNNK-----SLARKKSSLSTMFKFLFRNEQLDT 146

Query: 156 NPCLS---VERPKRKTEGIRPWTKEDMQQFKSFWSEGS---------------QPRLAFE 197
           +       ++ PK + + I+    +++         G+               + R    
Sbjct: 147 DITSGFNPIKLPKPQPDAIKRLEIDEVAIMLEAVETGNGLTDKEKDYWLKTKKRDRAILV 206

Query: 198 FLLYSGLRCSDSCRAGVQHL---QNNIFSIKTQKTGTIITVELPDGFMKLLA-----MTP 249
             +  GLR ++     +      +      +  K G  + + +      ++        P
Sbjct: 207 LFITYGLRLNELRELNISSFNFSRGEFMIYR--KRGKEVLMPINKACETVVKDYIENERP 264

Query: 250 IGKE-------TFFINNDKQKMNATQFSIWFKAKATKAGVN------KSAHGVRKFSATI 296
              E         F++  K++M A       K      G+N       S H +R  +AT 
Sbjct: 265 SDDEISEEYQDALFLSLQKKRMTARSIRDLVKKYTAI-GMNTSRSKGYSPHKLRATAATS 323

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
             + G + +++        V   + Y   A R  L         
Sbjct: 324 LIETGFSIYDVQNLMDHDNVTTTQLY--AAHRKNLKRDVVENFD 365


>gi|262184793|ref|ZP_06044214.1| putative phage-related integrase [Corynebacterium aurimucosum ATCC
           700975]
          Length = 414

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 42/331 (12%), Positives = 99/331 (29%), Gaps = 64/331 (19%)

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITT 116
           +        +  T++  ++ + ++    + + N+  + +SY    II   G++    +  
Sbjct: 49  KLKKGRSTPEEITVETHVTRWLETTAAETFSPNNLRNHKSYATKYIIPTLGEYKLSDVGA 108

Query: 117 KHIRSGVESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
             +R   ++ +    +  +     +S+ V  + AV++  +  NPC  V RP+  ++    
Sbjct: 109 DEVRELDKAVRDAHVSSRTVQMVRSSLSVCMEDAVKRGLIERNPCSQVPRPRAVSKKRTS 168

Query: 174 WTKEDMQQFKSF-WSEGSQPRLAFEFLLYSGLRCSDSCRAG------------------- 213
            T ++ +         G      +   L+ G R  +                        
Sbjct: 169 LTADEARHLIVHSAQVGDPFATLWAAFLFLGPRKGELLGLQRNKVNFSPAGCTAELDRAL 228

Query: 214 ----VQHLQN-----------------------------NIFSIKTQKTGTIITV----- 235
                 H +                                  +   KT + + +     
Sbjct: 229 VEVSWAHGEGCRCIDGVRPSKCPTRGLALPPGYDFEPLWGNLILAPPKTSSSVRLVHVPA 288

Query: 236 ELPDGFMKLLAMTPIGK-ETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFS 293
            L     + +   P  K    +++     +        +K+    AG+     H  R  +
Sbjct: 289 PLDAMLWQYVQAAPPNKWGLMWVSERGLPLRPKVALARWKSALKAAGLPVVDLHTARHTA 348

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324
           A++ A+ G     +    G  TVD    Y  
Sbjct: 349 ASLLAECGVPPQVIGVILGQSTVDTTLGYVH 379


>gi|148559347|ref|YP_001258625.1| phage integrase family site specific recombinase [Brucella ovis
           ATCC 25840]
 gi|148370604|gb|ABQ60583.1| site-specific recombinase, phage integrase family [Brucella ovis
           ATCC 25840]
          Length = 308

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 31/215 (14%), Positives = 70/215 (32%), Gaps = 12/215 (5%)

Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
             I   +  R ++ ++  + + ++  L + A +   +  N    + R K +   IR   +
Sbjct: 87  DSIIGTLRERGNSNATINRKMAALSKLLRKAHKMGDI-FNLPEFI-RQKERVGRIRFLEQ 144

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLY-SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
           E+ ++  +      +        L  +G R  ++       +Q    +    K+    TV
Sbjct: 145 EEEKRLFAAIKSRCEDSYRLSVFLVDTGCRLGEAIGLTWNDIQEQRVTFWVTKSNRSRTV 204

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS----AHGVRK 291
            L     K   + P  +    +      +N  +F   +     + G+        H +R 
Sbjct: 205 PLTRRARKASHI-PRER----LKGPFSMLNQVRFRQIWNEAKAEVGLGADDQIVPHILRH 259

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
             A+     G     +    G +T+     Y   A
Sbjct: 260 TCASRLVRGGIDIRRVQMWLGHQTLQMTMRYAHLA 294


>gi|119896887|ref|YP_932100.1| site-specific recombinase [Azoarcus sp. BH72]
 gi|119669300|emb|CAL93213.1| site-specific recombinase [Azoarcus sp. BH72]
          Length = 303

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 41/273 (15%), Positives = 80/273 (29%), Gaps = 27/273 (9%)

Query: 75  ISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTP 130
              Y          A  +  ++     ++ R         +    IR  V        + 
Sbjct: 16  CEAYLAYLGDQRRAAPLTLENYRRDLHRLERLGDGRALMTLGAADIRRFVARLHGEGLSG 75

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR----PWTKEDMQQFK--- 183
            S  + L+  R L++W +R+  +  NP   +  PK      R      + +  Q      
Sbjct: 76  RSIARVLSCWRGLYRWLLRRRLIPANPVDGIRAPKS----PRLLPRALSPDQAQALLDPP 131

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTGTIITVELPDGF 241
           +  +   +    FE    SGLR S+     V    +          K G   +V +    
Sbjct: 132 AEAALEVRDLAMFELFYSSGLRLSELAGLDVGGGLDPAEGMVTVLGKRGKTRSVPVGAHA 191

Query: 242 MKLLAMTPIGK--------ETFFINNDKQKMNATQFSIWFKAKATK--AGVNKSAHGVRK 291
              L      +           F+    ++M+ +        +A     GV+   H +R 
Sbjct: 192 WAALKAWDTVRAAIAPAAEPALFVTRSGRRMSPSAIRDRLARRARSVGLGVHVHPHMLRH 251

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK 324
             A+    +      +    G  ++   + YT 
Sbjct: 252 SFASHLLQSSGDLRAVQELLGHSSIRSTQVYTH 284


>gi|293373745|ref|ZP_06620092.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|292631400|gb|EFF50031.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
          Length = 423

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 49/257 (19%), Positives = 94/257 (36%), Gaps = 24/257 (9%)

Query: 104 RKSGDFDYRKITTKHIRSGVESRKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162
           +     +          + + + KH   +SA+ F+ ++R +   A+  E++  +P    E
Sbjct: 155 KDIALKELSLPFITDYETFLRTDKHLKINSAMVFVRNLRAMVFRAIDNEWLVKDPFRRYE 214

Query: 163 RPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ- 218
             K +       +KE++           + S  R  F F  ++GL   D      ++++ 
Sbjct: 215 Y-KEEETTREFLSKEEIHLLMETPITRKKMSMVRDLFLFCCFTGLAFIDLYNLKEENIKE 273

Query: 219 ----NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM---NATQFSI 271
                    I  QKTGT   ++L D + K +     G     +  D +     N      
Sbjct: 274 FFDEGEWIVIHRQKTGTEANIKLLD-YPKQIMEKYRG-----LCEDGRVFPVPNYQSCMD 327

Query: 272 WFKAKATKAGVNK--SAHGVRKFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADR 328
             K    K G+ K  S H  R   AT      G     + +  G K +   + Y K   +
Sbjct: 328 SLKRLGKKCGITKPLSWHMSRHSFATSVCLSNGVPIETVSSMLGHKDIKTTQVYAK-ITK 386

Query: 329 IRLGIKNSRRISSVVDS 345
            +L  K+  ++S  +++
Sbjct: 387 EKLS-KDVEKLSQQINN 402


>gi|283798849|ref|ZP_06348002.1| phage integrase [Clostridium sp. M62/1]
 gi|291073387|gb|EFE10751.1| phage integrase [Clostridium sp. M62/1]
          Length = 363

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 48/292 (16%), Positives = 93/292 (31%), Gaps = 47/292 (16%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR-- 126
           + +     Y +      L  N+ ++ E     +I+   G     +I+TK + +       
Sbjct: 57  SFEAFTELYIRDMK-SRLKENTWMTKEHIIRTKILPYFGKLKISEISTKEVIAWQNEMLA 115

Query: 127 ----KHTPSSAIQFLTS---MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR---PWTK 176
               K  P S     T    +  +F  AVR   +  NP    +     +E  +    WT+
Sbjct: 116 YRDDKRKPYSQTYLKTLHNQLSAIFNHAVRYYELRSNPAA--KAGNMGSEEHKEMLFWTR 173

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK-------- 228
           E+ ++F     +      AFE L + G+R  +              +++  K        
Sbjct: 174 EEYKKFSFEIMDKPISFYAFEMLYWCGIREGELLALTAADFDFEKETVRINKSYQRLHGE 233

Query: 229 --------TGTIITVELPDGFMK-------LLAMTPIGKETFFINNDKQKMNATQFSIWF 273
                     +  T+++P    +       +L         F I         +      
Sbjct: 234 DVITTPKTKKSNRTIKMPKFLCEEMQEYLQMLYGLKKKDRIFTITK-------SYLHHEM 286

Query: 274 KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              A  AGV +   H +R    ++  D G +A  +    G +++D    Y  
Sbjct: 287 DRGAKAAGVKRIRIHDLRHSHISLLIDMGFSAVAIADRVGHESIDITYQYAH 338


>gi|160886644|ref|ZP_02067647.1| hypothetical protein BACOVA_04656 [Bacteroides ovatus ATCC 8483]
 gi|156107055|gb|EDO08800.1| hypothetical protein BACOVA_04656 [Bacteroides ovatus ATCC 8483]
          Length = 409

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 77/220 (35%), Gaps = 19/220 (8%)

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
           E +     +A  +L  ++ + + A ++ +           PK+     R  ++E  ++ +
Sbjct: 176 EDKGQAIDTARHYLAILKKICRLAYKEGHADKIHFQHFTLPKKTETTPRALSRESFEKIR 235

Query: 184 -----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTII 233
                ++       R  F F  Y+G+  +D       +LQ +         + +K     
Sbjct: 236 DVEIPAYRKSHMLARDMFLFGCYTGVSYADVVSITHANLQTDGDGALWLKYRRKKNELRA 295

Query: 234 TVELPDGFMKLLAM-TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVR 290
           +V+L    + L+   +   +ET F       +         KA A  AG+      H  R
Sbjct: 296 SVKLLPEAIALINKYSSEDRETLFPLLRWPNLRRH-----MKALAALAGIKDDLCYHQAR 350

Query: 291 KFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              A++   +AG     +    G   +   + Y + + + 
Sbjct: 351 HSFASLITLEAGVPIETISRMLGHSDISTTQVYARVSPKK 390


>gi|190015183|ref|YP_001966733.1| putative integrase/recombinase [Bacillus cereus]
 gi|190015448|ref|YP_001967057.1| putative integrase/recombinase [Bacillus cereus]
 gi|218848491|ref|YP_002455116.1| phage integrase family protein [Bacillus cereus AH820]
 gi|116584859|gb|ABK00974.1| putative integrase/recombinase [Bacillus cereus]
 gi|116585129|gb|ABK01238.1| putative integrase/recombinase [Bacillus cereus]
 gi|218540542|gb|ACK92938.1| phage integrase family protein [Bacillus cereus AH820]
          Length = 347

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 39/277 (14%), Positives = 81/277 (29%), Gaps = 31/277 (11%)

Query: 85  GSLAVNSRISF----ESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSM 140
              +  ++  +      +   I    G           I     S+K+  ++  +  T +
Sbjct: 59  KKRSERTKQQYLHDLSHFLRYIKEAIGTIQELSHNDMEIYFYELSKKYAATTLRKKKTVV 118

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEG--IRPWTKEDMQQFKSFWSEGSQ-PRLAFE 197
           +   K+      ++ N    +++   K E    R    E++ Q      + +     AF 
Sbjct: 119 QQFLKYVYDNNGLSDNFSSRLKKVSVKKEELVNRDLYPEEVTQILDELKKSNYFVYTAFF 178

Query: 198 FLLYSGLRCSDSCRAGVQHL------QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251
            L  +GLR  +   A    L         +  +  +   +       D    L  +  + 
Sbjct: 179 LLTTTGLRIEEIATAKWADLVFHSSLNAYLLRVVGKGNKSREVRIFEDTLDALCHVRSLR 238

Query: 252 KET----------FFINNDKQKMNATQFSIWFKAKATKAGVN--------KSAHGVRKFS 293
           K+T          F    D     A   S     K  +  +          + H  R F 
Sbjct: 239 KQTTKLDASNTSAFLPKADGSNYRADYLSSLVAKKIEETNLTFLRYRQDRITPHTCRHFM 298

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
           A    + G    ++    G +++   E Y +   R +
Sbjct: 299 ANYLMEKGIELKKIRDYLGHESIMTTERYLRERTRRQ 335


>gi|75675825|ref|YP_318246.1| phage integrase [Nitrobacter winogradskyi Nb-255]
 gi|74420695|gb|ABA04894.1| phage integrase [Nitrobacter winogradskyi Nb-255]
          Length = 362

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 31/251 (12%), Positives = 77/251 (30%), Gaps = 14/251 (5%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS--SAIQFLTSMRVL 143
            +A  ++   E +   + +       +    +  +S            +A + LT+++  
Sbjct: 96  EVAKLTKEQIERWHAALAKNPARIRTKNGRRQRFKSTTHPENDRRRKSTANRILTTLKAA 155

Query: 144 FKWAVRQEYVAINPC-LSVERPK-RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201
              A R   V  +     V   +   +  +R  +  ++++     S   +  +     L 
Sbjct: 156 LNLAWRDGKVPTDAAWRRVTPFESVDSARVRYLSMTEIRRLLEACSPAFKHLVR--VALE 213

Query: 202 SGLRCSDSCRAGVQHLQN--NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE---TFF 256
           +G R  +     V+          ++  K+G    V L       +A    G+       
Sbjct: 214 TGCRYGELIALRVEDFDADAGTLHVRDSKSGKPRHVVLTQEGAAYVAEIAKGRSPAAMLL 273

Query: 257 INNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWK 314
           +  + +       +   +     A ++   + H +R   A+ +   G +   +    G  
Sbjct: 274 VKENGEPWQRDHQADPLRNACKNAKIDPAINFHALRHSWASHAVMRGVSLQIVARQLGHT 333

Query: 315 TVDQAE-TYTK 324
           T    E  Y  
Sbjct: 334 TTRVTEAHYAH 344


>gi|15801820|ref|NP_287838.1| putative integrase for prophage CP-933R [Escherichia coli O157:H7
           EDL933]
 gi|15831183|ref|NP_309956.1| transposase [Escherichia coli O157:H7 str. Sakai]
 gi|168762634|ref|ZP_02787641.1| Rac prophage; integrase [Escherichia coli O157:H7 str. EC4501]
 gi|217329474|ref|ZP_03445554.1| Rac prophage; integrase [Escherichia coli O157:H7 str. TW14588]
 gi|260867793|ref|YP_003234195.1| putative integrase [Escherichia coli O111:H- str. 11128]
 gi|291282440|ref|YP_003499258.1| putative integrase for prophage CP-933R [Escherichia coli O55:H7
           str. CB9615]
 gi|12515407|gb|AAG56452.1|AE005371_8 putative integrase for prophage CP-933R [Escherichia coli O157:H7
           str. EDL933]
 gi|13361394|dbj|BAB35352.1| putative transposase [Escherichia coli O157:H7 str. Sakai]
 gi|189367099|gb|EDU85515.1| Rac prophage; integrase [Escherichia coli O157:H7 str. EC4501]
 gi|217317913|gb|EEC26341.1| Rac prophage; integrase [Escherichia coli O157:H7 str. TW14588]
 gi|257764149|dbj|BAI35644.1| putative integrase [Escherichia coli O111:H- str. 11128]
 gi|290762313|gb|ADD56274.1| Putative integrase for prophage CP-933R [Escherichia coli O55:H7
           str. CB9615]
          Length = 411

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 44/314 (14%), Positives = 87/314 (27%), Gaps = 65/314 (20%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHIRSGVE---- 124
           T   L   + K      L  N+    +S    +            I    I +       
Sbjct: 82  TFGELCDIWTKIKE-TELTTNTMKKTKSQLKTLRIIICESTPISHIRYSDILNYRNELLH 140

Query: 125 ------------SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
                        +  T  +   ++  +  L ++A +  +++  P   V++ +R      
Sbjct: 141 GETLYLDNPRSNKKGRTVRTVDNYIALLCSLLRFAYQSGFISTKPFEGVKKLQRNRIKPD 200

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
           P +K +         +G    L  +F +YSGLR  +      + +      +  ++  TI
Sbjct: 201 PLSKTEFNALMES-EKGQSQNLW-KFAVYSGLRHGELAALAWEDVDFEKGVVNVRRNLTI 258

Query: 233 ITVELPDG----------FMKLLAMTP-----IGKE-----TFFINNDKQK--------- 263
           + +  P                L          G       TF+     +          
Sbjct: 259 LDMFGPPKTNAGIRTVTLLQPALEALKEQYKLTGHHRKSEITFYHREYGRTEKQKLHFVF 318

Query: 264 ------------MNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMA 309
                        + +     + A   +AG+ +    H  R   A     AGA    + +
Sbjct: 319 MPRVCNGKQKPYYSVSSLGARWNAAVKRAGIRRRNPYHT-RHTFACWLLTAGANPAFIAS 377

Query: 310 TYGWKTVDQA-ETY 322
             G +T     E Y
Sbjct: 378 QMGHETAQMVYEIY 391


>gi|290512978|ref|ZP_06552342.1| phage integrase family site-specific recombinase [Klebsiella sp.
           1_1_55]
 gi|289774591|gb|EFD82595.1| phage integrase family site-specific recombinase [Klebsiella sp.
           1_1_55]
          Length = 409

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 41/251 (16%), Positives = 94/251 (37%), Gaps = 24/251 (9%)

Query: 92  RISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQE 151
           +++   + + I    G+    + T  H  +  +       +  Q L  M+  F++   + 
Sbjct: 134 KVNRRDFNNHIAPVLGNMIVDQTTKAHWLNLFDGMGRRVVTG-QMLGLMQRTFRFCSNRG 192

Query: 152 YVAINPCLSVERPKRKTEG------IRPWTKEDMQQFKSFWSEGS-QPRLAFEFLLYSGL 204
            + +NP   +E  +R   G       R  + E+++   +   E   + +L  +FL+ +G 
Sbjct: 193 VINVNP---IESLRRSDVGLTASVKDRRLSDEEIKTVWNILPELKYRQQLIMKFLIMTGC 249

Query: 205 RCSDSCRAGVQHLQNNIFSIK----TQKTGTIITVELPDGFMKLLAM---TPIGKETFFI 257
           R ++   A  +    +  +        KTG  +   LP+  ++++     T + K    +
Sbjct: 250 RSTEIRTARWEWFDFHEQTWTIPASDYKTGKSVRRALPEAVVRMMLAEKETSVSKHVVTL 309

Query: 258 NNDK-----QKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATY 311
           +  +     +       +++      K G+   S H +R+  AT  ++ GA  H +    
Sbjct: 310 SRYRGPEDDRPPLQPNVALFSAQIIAKTGMKPWSLHDLRRTVATRLSELGAPPHVVEKLL 369

Query: 312 GWKTVDQAETY 322
           G         Y
Sbjct: 370 GHHMAGVMARY 380


>gi|83649365|ref|YP_437800.1| integrase [Hahella chejuensis KCTC 2396]
 gi|83637408|gb|ABC33375.1| Integrase [Hahella chejuensis KCTC 2396]
          Length = 337

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 40/320 (12%), Positives = 91/320 (28%), Gaps = 38/320 (11%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87
             G+R+R  +P           A   S        +P K    L  L+        W  L
Sbjct: 19  RGGKRVRKTFPKLQQAKQ--WEAEQKSKAYSGEWKAPTKDKRRLSDLVK------TWHDL 70

Query: 88  AVNSRIS---FESYFDQIIRKSGDFDYRKITTKHIRSGVESR-KHTPSSAIQFLTS---- 139
             ++             +  K  +   ++ T +        R      ++ + +++    
Sbjct: 71  HGHTLKDADNRLHALKVLCEKLNNPIAKEFTAEDFLEYRRWRLTQKVKNSNRLVSANTVN 130

Query: 140 -----MRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP- 192
                +  +F   ++   +   NP   V + +     +    K+ ++       +   P 
Sbjct: 131 HDHMYLSAVFNKLIKFGNWKLENPLKGVSKLRIDERDLTYLEKDQIRALLEALKKSRNPN 190

Query: 193 -RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251
                +  L +G R  ++ +   + +++N       K      V + +     +      
Sbjct: 191 VLAMSKICLATGARWGEAEKLNAEQIRHNKVHFVGTKNSKSRAVPISEELAVEILSGRA- 249

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHG-----VRKFSATISADAGATAHE 306
                     +          F+    +AG+    HG     +R   A+          +
Sbjct: 250 -------ERGRLFRGAGSEEAFERAVKRAGLTL-PHGQLTHILRHTFASHYMINDGNILK 301

Query: 307 LMATYGWKTVDQAETYTKGA 326
           L    G  ++D    Y K A
Sbjct: 302 LKYILGHASLDMTIRYAKLA 321


>gi|327467301|gb|EGF12801.1| phage integrase family site-specific recombinase [Streptococcus
           sanguinis SK330]
          Length = 421

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 64/364 (17%), Positives = 115/364 (31%), Gaps = 70/364 (19%)

Query: 49  SALTGSTPKREYINSPRKK---PTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIR 104
            A+  +  + E   S R+K     TL+ L  E+ KS      + N+      Y D  II 
Sbjct: 56  RAIIQARLEFEKNGSTREKVIVIDTLEDLAEEWFKSYKTWVNSHNTLNRVRGYLDNYIIP 115

Query: 105 KSGDFDYRKITTKHIRSGVE--------------SRKHTPSSAI--QFLTSMRVLFKWAV 148
           K GD+   KI +  I+  +                R    S+      +  ++ +F + +
Sbjct: 116 KFGDYKPDKIESADIQLWLNGLAKKSKESIESGIKRADKGSAKDFGAVIHKLKDIFDYGI 175

Query: 149 RQEYVAINPCLSVE---RPKRKTEGIRPWTKEDMQQFKSFWS------EGSQPRLAFEFL 199
               +  NP  SV+   +PK   + I     + +  + ++           + +L    L
Sbjct: 176 TNYGLITNPVSSVKIPPKPKSNKQRIMVLHDDSLVIWLNYLESLDNNRANRRFKLICNTL 235

Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-----------------------------G 230
           L S LR ++     +  L     SI   KT                              
Sbjct: 236 LASALRINELLALTIDDLDFENSSINVSKTLMWKTANKKDGTKGEVICKATPKTDAGNRS 295

Query: 231 TIITVELPDGFMK------LLAMTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGV 282
             + + + +          L         T   F       M         K +    G+
Sbjct: 296 VPVPLPIIEKLRDFHHEMNLYLELHNRHRTKLIFPTIYGNYMCDRNERTTLKKRLVGLGL 355

Query: 283 -NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNS--RR 338
            N   H  R   A++  +AG    EL    G K++    +TY + A + +L        +
Sbjct: 356 PNYGFHLFRHTHASMLLNAGTNWKELQVRMGHKSISTTMDTYAELAPQRKLEAVGIYLEK 415

Query: 339 ISSV 342
           I+ +
Sbjct: 416 IAEL 419


>gi|78045912|ref|YP_362087.1| putative integrase [Xanthomonas campestris pv. vesicatoria str.
           85-10]
 gi|78034342|emb|CAJ21987.1| putative integrase [Xanthomonas campestris pv. vesicatoria str.
           85-10]
          Length = 349

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 41/308 (13%), Positives = 89/308 (28%), Gaps = 58/308 (18%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT---- 129
           L+ + R        ++ +  ++  +  + I  +G     ++    + + +          
Sbjct: 42  LLDQVRGRLRLRHYSLRTEQAYVGWIRRFILANGKRHPGQMGQVEVEAFLTDLATRGQVS 101

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
             +  Q L ++  L++  +  E        ++ R KR        + E++ +  +     
Sbjct: 102 AGTQNQALAALLFLYREVLGVELP---WMENLVRAKRPRRIPVVLSAEEVARLLTMLEGS 158

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFM----- 242
              RL    L  SG+R  +  R  ++ +        ++  K G    V  P         
Sbjct: 159 C--RLMAGLLYGSGMRLLECLRLRIKDVDVVRGEIVVRDGKGGKDRRVPPPHSLRGELMQ 216

Query: 243 ------------------------KLLAMTPIGK-----ETFFINND-----------KQ 262
                                    L    P        +  F+              + 
Sbjct: 217 QRERALLLHAADLAEGAGRVFLPHALARKYPNANVEPGWQYLFLAARRSVDPRSGRVGRH 276

Query: 263 KMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
            ++        ++   +AG+ K A  H +R   AT   +AG     +    G K V   +
Sbjct: 277 HVSEEVLQRAVQSARRQAGIAKPATCHTLRHSFATHLLEAGHDIRTVQELLGHKDVTTKQ 336

Query: 321 TYTKGADR 328
            Y     R
Sbjct: 337 IYAHVLGR 344


>gi|22537398|ref|NP_688249.1| phage integrase family site specific recombinase [Streptococcus
           agalactiae 2603V/R]
 gi|76798019|ref|ZP_00780277.1| site-specific recombinase, phage integrase family [Streptococcus
           agalactiae 18RS21]
 gi|77406036|ref|ZP_00783113.1| site-specific recombinase, phage integrase family [Streptococcus
           agalactiae H36B]
 gi|313889440|ref|ZP_07823088.1| site-specific recombinase, phage integrase family [Streptococcus
           pseudoporcinus SPIN 20026]
 gi|22534273|gb|AAN00122.1|AE014249_3 site-specific recombinase, phage integrase family [Streptococcus
           agalactiae 2603V/R]
 gi|76586642|gb|EAO63142.1| site-specific recombinase, phage integrase family [Streptococcus
           agalactiae 18RS21]
 gi|77175372|gb|EAO78164.1| site-specific recombinase, phage integrase family [Streptococcus
           agalactiae H36B]
 gi|313122272|gb|EFR45363.1| site-specific recombinase, phage integrase family [Streptococcus
           pseudoporcinus SPIN 20026]
 gi|323127165|gb|ADX24462.1| phage integrase family site specific recombinase [Streptococcus
           dysgalactiae subsp. equisimilis ATCC 12394]
          Length = 399

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 44/288 (15%), Positives = 90/288 (31%), Gaps = 34/288 (11%)

Query: 70  TLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--R 126
           T +  +++ Y ++      +V  + +   +    I+  G    + IT +   +       
Sbjct: 78  TFENYMNKIYLRAYKQKVQSVTYKTALPHH-KLFIQYFGLKPLKAITPRDCEAFRLHIIE 136

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            ++ + A    +  +    +A R  Y++  PC +++ P+ K      WT  + Q F   +
Sbjct: 137 NYSENYAKNLWSRFKACMGYAERLGYISNMPCKALDNPRGKHPETPFWTYAEFQTFIKSF 196

Query: 187 SEGSQPRL----AFEFLLYSGLRCSDSCRAGVQHLQ-----------------NNIFSIK 225
                  L    A      +G+R S+      + +                   N +   
Sbjct: 197 DLHDYEELQRFTAIWLYYMTGVRVSEGLSLCWEDIDFDKKFLKVHTTLEKDENGNWYRKD 256

Query: 226 TQKTGT-IITVELPDG----FMKLLAMTPIGKET-FFINNDKQKMNATQFSIWFKAKATK 279
             KT      +EL D                ++T F I+        +      K KA +
Sbjct: 257 QTKTPAGERLIELDDITIEVLQVWRKNQFANQDTDFIISRFGDPFCKSTICRIIKRKAQQ 316

Query: 280 AGVNK-SAHGVRKFSATISADAG-ATAHELMATYGWKTVDQA-ETYTK 324
            GV   +  G+R   A+   +        +    G         TY+ 
Sbjct: 317 VGVPVITGKGLRHSHASYLINVLKKDILYVARRMGHADKSTTLNTYSH 364


>gi|326407441|gb|ADZ64512.1| phage integrase [Lactococcus lactis subsp. lactis CV56]
          Length = 343

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 43/314 (13%), Positives = 101/314 (32%), Gaps = 51/314 (16%)

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHI 119
           +   +        L + +  S    ++  N+     ++  + I+   G++   KITT  +
Sbjct: 11  VAREKVSFDNFNALATSWFDSYK-LTVKANTIRINSNFLKNYILPALGNYKVEKITTVLL 69

Query: 120 RSGVESRKHTPSSA-----IQ----------FLTSMRVLFKWAVRQEYVAINPCLSVERP 164
           ++ V       ++A      +           L  ++ +  + ++   ++ NP + V  P
Sbjct: 70  QNIVNDWARNANTAEIVNGNREKGKSKDYKLLLNIIKRILDYGMQLGVISDNPAIKVFSP 129

Query: 165 KRKT---EGIRPWTKEDMQQFKSFWSE------GSQPRLAFEFLLYSGLRCSDSCRAGVQ 215
           K KT   + I+ +  +++++F ++           +    ++ LL +GLR  ++      
Sbjct: 130 KLKTRTVKKIKYFNNDELKRFLAYLDSLQSTTTNKKSATLYKLLLATGLRICEALALSWS 189

Query: 216 HLQ----------------NNIFSIKTQKTGTII------TVELPDGFMKLLAMTPIGKE 253
            +                 N I      K    +      T+ +   + K      I   
Sbjct: 190 DIDFVNNTVSVSKTLIQYSNEIQDSAKTKESNRLVSVDSETISMLKEWRKHQNYGAISLH 249

Query: 254 TFFINNDKQKMNATQF--SIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATY 311
              + +  QKM   +       +        N   HG R   A++  +      E+    
Sbjct: 250 DSLVFSYHQKMRTYELERQHLVRHFKKAKVPNIGFHGFRHTHASLLMNNDVNPKEIQMRL 309

Query: 312 GWKTVDQAE-TYTK 324
           G          Y+ 
Sbjct: 310 GHADYSITMNLYSH 323


>gi|238897940|ref|YP_002923620.1| integrase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
 gi|229465698|gb|ACQ67472.1| integrase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
          Length = 336

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 43/281 (15%), Positives = 89/281 (31%), Gaps = 33/281 (11%)

Query: 88  AVNSRISFESYFDQIIRKSG-----DFDYRKITTKHIRSGVESRKH---TPSSAIQFLTS 139
           +  S+ +  S    +    G      FD+  +T   I+  ++   +    P++    L +
Sbjct: 36  SKKSQKTMRSCLTSVSSMFGCNEPLHFDWSSLTRDMIQVVLQRLLNEHKAPNTINLILCA 95

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGI----RPWTKEDMQQFKSFWSE---GSQP 192
           ++ + + A     +  +    V+  KR         R     +++Q  +F      G+  
Sbjct: 96  IKGVAEEARASRLMDADNYHDVKNIKRIRGARISRGRMLECAEIKQLFTFLDIQTTGAAI 155

Query: 193 RLA--FEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMK----L 244
           R A     +   GLR S+     + H+   NN   I  +     I   +P    K     
Sbjct: 156 RDAALISLMFGCGLRRSEVADLDIDHIDFENNKIDIHGKGNKERIN-YMPPETAKRMCLW 214

Query: 245 LAMTPIGKETFFINNDKQ-------KMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATI 296
           +               ++       ++         K   TK  +   + H +R+  A++
Sbjct: 215 VDSVRGDHSGPLFTRIRKNDDVTSDRLTTNGIGFIIKQLVTKLSLKSFTPHDLRRSYASL 274

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
             + G     +    G  +V   + Y K     RL      
Sbjct: 275 LLENGEDILTVKEALGHASVVTTQQYDKR-SIKRLEAAALN 314


>gi|189183382|ref|YP_001937167.1| putative integrase [Orientia tsutsugamushi str. Ikeda]
 gi|189183547|ref|YP_001937332.1| putative integrase [Orientia tsutsugamushi str. Ikeda]
 gi|189184444|ref|YP_001938229.1| putative integrase [Orientia tsutsugamushi str. Ikeda]
 gi|189180153|dbj|BAG39933.1| putative integrase [Orientia tsutsugamushi str. Ikeda]
 gi|189180318|dbj|BAG40098.1| putative integrase [Orientia tsutsugamushi str. Ikeda]
 gi|189181215|dbj|BAG40995.1| putative integrase [Orientia tsutsugamushi str. Ikeda]
          Length = 340

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 82/222 (36%), Gaps = 16/222 (7%)

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK 113
               R      +    T K L   Y +       A    I++E Y D++   +     +K
Sbjct: 108 ENENRIKERERKANDITFKELCYRYIE-----EYAKIYTINWEEYTDRVHTYAQSLYGKK 162

Query: 114 ITTKHIRSGVE-----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168
           I+   +    +     S++   ++A   L ++R +F  A++   +  NP L +E+ K + 
Sbjct: 163 ISQIRMSDIQQIFNDISKEGKYATANLLLATLRTMFNKAIKWGLIENNPTLGIEQHKLQA 222

Query: 169 EGIRPWTKEDMQQFKSFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSI 224
              R  + + M +        + P  R      LY+G R S+       ++     I+ I
Sbjct: 223 RERR-LSYDKMGRLLHVLCGETTPLIRDFALLALYTGARKSNVLEMECDNIDFERKIWHI 281

Query: 225 KTQKTGTIITVELPDGFMKLLAMTP-IGKETFFINNDKQKMN 265
              K G    + L D  M++L       K  + + +D  K  
Sbjct: 282 PKTKNGKAQNIPLTDEAMEILQARKLTSKSKWVLQSDSSKSG 323


>gi|126733355|ref|ZP_01749102.1| Phage integrase [Roseobacter sp. CCS2]
 gi|126716221|gb|EBA13085.1| Phage integrase [Roseobacter sp. CCS2]
          Length = 322

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 53/311 (17%), Positives = 102/311 (32%), Gaps = 50/311 (16%)

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHWG--SLAVNSRISFESYFDQIIRKSGDFDYRKIT 115
           R+ I   R   +T    ++      H+   SL+ N+R ++ S         G        
Sbjct: 8   RDNIFLSRPTNSTFSAALTSSEAVEHFIRESLSENTRKAYRSDLAHFTAWGGQLP-ASPD 66

Query: 116 TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC---------LSVERPK- 165
              +    ++    P+S  + + ++  +        +   NPC           ++R K 
Sbjct: 67  MVAMYLADQADTLAPASLARRIATLSKVHA---ANGW--DNPCCAEVVRATLRGIKRVKG 121

Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL---YSGLRCSDSCRAGVQHLQNN-- 220
              +  +P  +ED+         G + +     LL     G R S+     V  +++   
Sbjct: 122 TAQDQAKPLLREDLFLVLDALGNGIRTKRDRALLLIGWGGGFRSSELTGLQVSDIEDARE 181

Query: 221 --IFSIKTQKT-----GTIITVELPDGF---------MKLLAMTPIGKETFFI------N 258
             I  ++  KT     G  + + L                    P+GK   F+      N
Sbjct: 182 GIILHLRRSKTDQTGEGRKVGIPLGRTRHCPVAALTAWLAATNRPVGK--IFLPVDRHGN 239

Query: 259 NDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAGATAHELMATYGWKT 315
               ++     S   + + T AG+     S H +R   AT +  AG   +++ A  G  +
Sbjct: 240 LRGDQLRPDAVSTILRDRLTDAGIVSEGYSGHSLRAGLATSAIKAGVPTYKVRAQTGHAS 299

Query: 316 VDQAETYTKGA 326
                 Y + A
Sbjct: 300 DAMLGRYVRDA 310


>gi|262402972|ref|ZP_06079532.1| putative integrase [Vibrio sp. RC586]
 gi|262350471|gb|EEY99604.1| putative integrase [Vibrio sp. RC586]
          Length = 407

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 50/362 (13%), Positives = 98/362 (27%), Gaps = 63/362 (17%)

Query: 20  KIIYYFRKGHGRRIRLPYPHEST---FIPAYMSALT-----GSTPKREYINSPRKKPT-- 69
           +I +Y+  G  RR  L  P       F      A+      G+     +    +      
Sbjct: 22  RISFYY-MGKRRRESLGLPPTKQNINFAKQKREAIQYEIKIGTFNYAAHFPESKHASGVP 80

Query: 70  ---TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES- 125
              +L  L  ++  S     +  ++   ++      I   G        +    +     
Sbjct: 81  RAKSLLQLTKQFLASKD-HDIRRSTLQRYDWVLRDFIEIYGKTRSSDTLSPRTLTEFRQE 139

Query: 126 --RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
             +  T  +  + L ++     W  + EY++ +    ++R K     I+P++  ++    
Sbjct: 140 LVKGKTGRTINRNLVTINAFLAWLYKMEYISRDLSKVLQRVKESEVDIQPFSMAEIDSIL 199

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ----------KTGT 231
                  Q R     L+YSG+R  + C    + +   N    I+            KT  
Sbjct: 200 KHC-HQLQHRNIVTLLVYSGIRSGELCALAWEDVDFENKTIHIRRSTYDMRGLKTTKTDK 258

Query: 232 IITVELPDGFMKLLAMT--------PIGKETFFINNDKQK-------------------- 263
              V+L    +  L           P   +        +K                    
Sbjct: 259 ERFVDLLPPALDALKAQQYLTYSLEPKEYDVELPGQAYRKESLRFVFNPKVVREQKVSGY 318

Query: 264 --MNATQFSIWFKAKATKAGVNKS-AHGVRKFSATISAD-AGATAHELMATYGWKTVDQA 319
                      + A   K GV     + +R   A+     A      L    G   +   
Sbjct: 319 DYYGKRALGRMWTALCKKGGVRYRNQYQLRHTYASWMITHANVNVSYLAQQMGHADITMV 378

Query: 320 ET 321
             
Sbjct: 379 AR 380


>gi|228902069|ref|ZP_04066233.1| YdcL (Lambda integrase-like, N-terminal,DNA breaking-rejoining
           enzyme, catalytic core) [Bacillus thuringiensis IBL
           4222]
 gi|228857495|gb|EEN01991.1| YdcL (Lambda integrase-like, N-terminal,DNA breaking-rejoining
           enzyme, catalytic core) [Bacillus thuringiensis IBL
           4222]
          Length = 362

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 40/279 (14%), Positives = 83/279 (29%), Gaps = 34/279 (12%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KH 128
             W     ++S+              + ++ ++++ G      IT KH+ +        +
Sbjct: 65  FDWYCQRRKQSSI--------NAIKNAIYNHLLKEFGKMKIDTITAKHVMNYQNKLLNNY 116

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP-WTKEDMQQFKSFWS 187
           +  +  Q  T +  +F +A++   +  NP       + ++      W  ++ Q+F     
Sbjct: 117 SADTLKQIHTILSAIFNFAIKFYGLTSNPARIAGNFELESNKRMSYWEFDEFQRFIDTVD 176

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSI---------KTQKTGTIITVE 236
           +       F  L YSG R  +        +       +I            KT +   + 
Sbjct: 177 DLLYN-AFFSTLYYSGARKGELLALTWADVDFVGKTININKTEYNRQVTKPKTKSSNRII 235

Query: 237 LPDGF---------MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS-A 286
           L                    P+  +          +  +     +K     AGV K   
Sbjct: 236 LLPTLIINLLKKLKEHATLTAPVKNDYVVFGEFYNSIATSTLDERYKKYVATAGVKKILL 295

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
           H  R   A+   + G +   +    G   V     TY+ 
Sbjct: 296 HEFRHSHASYLINKGVSPLVVAQRLGHSDVATTLNTYSH 334


>gi|212691118|ref|ZP_03299246.1| hypothetical protein BACDOR_00608 [Bacteroides dorei DSM 17855]
 gi|212666350|gb|EEB26922.1| hypothetical protein BACDOR_00608 [Bacteroides dorei DSM 17855]
          Length = 409

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/282 (14%), Positives = 98/282 (34%), Gaps = 28/282 (9%)

Query: 86  SLAVNSRISFESYFDQIIRKSG------DFDYRKITTKHIRSG----VESRKHTPSSAIQ 135
             A  +  +++     +           D  + ++T + I       ++ + H   +A  
Sbjct: 128 DRAKGTYPAYDYTCRTMREFIEAKFKTKDLAFGQLTEQFIHDYENFILDEKGHAVDTARH 187

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK--SFWSEGSQPR 193
           +L  ++   + A ++ +           PK+  +  +  ++E  ++ +        +  R
Sbjct: 188 YLAIVKKSCRKAYKEGHSERFMFQHYVLPKQTVKTPKALSRESFEKIRDVEIAPHRTTHR 247

Query: 194 LAFEFLL---YSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVELPDGFMKLL 245
           LA +  L   Y+G+  SD+     ++L  +         + +K     +V+L    + L+
Sbjct: 248 LARDLFLFACYTGVAYSDAVTITKENLHTDEDGKLWLKYRRKKNELRASVKLLPEAVDLI 307

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATIS-ADAGA 302
                 +     N     ++        KA A  AG+ ++   H  R   A++   +AG 
Sbjct: 308 EKYHDDER----NTLFPMIHYPSLRNHMKALAVLAGIKENLCYHVGRHSFASLVTLEAGV 363

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
               +    G   +   + Y +     +L     R I +  D
Sbjct: 364 PIETISKMLGHSNIQTTQVYAR-VTPKKLFEDMDRLIEATKD 404


>gi|157419701|gb|ABV55390.1| site-specific recombinase [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 403

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 44/288 (15%), Positives = 90/288 (31%), Gaps = 34/288 (11%)

Query: 70  TLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--R 126
           T +  +++ Y ++      +V  + +   +    I+  G    + IT +   +       
Sbjct: 82  TFENYMNKIYLRAYKQKVQSVTYKTALPHH-KLFIQYFGLKPLKAITPRDCEAFRLHIIE 140

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            ++ + A    +  +    +A R  Y++  PC +++ P+ K      WT  + Q F   +
Sbjct: 141 NYSENYAKNLWSRFKACMGYAERLGYISNMPCKALDNPRGKHPETPFWTYAEFQTFIKSF 200

Query: 187 SEGSQPRL----AFEFLLYSGLRCSDSCRAGVQHLQ-----------------NNIFSIK 225
                  L    A      +G+R S+      + +                   N +   
Sbjct: 201 DLHDYEELQRFTAIWLYYMTGVRVSEGLSLCWEDIDFDKKFLKVHTTLEKDENGNWYRKD 260

Query: 226 TQKTGT-IITVELPDG----FMKLLAMTPIGKET-FFINNDKQKMNATQFSIWFKAKATK 279
             KT      +EL D                ++T F I+        +      K KA +
Sbjct: 261 QTKTPAGERLIELDDITIEVLQVWRKNQFANQDTDFIISRFGDPFCKSTICRIIKRKAQQ 320

Query: 280 AGVNK-SAHGVRKFSATISADAG-ATAHELMATYGWKTVDQA-ETYTK 324
            GV   +  G+R   A+   +        +    G         TY+ 
Sbjct: 321 VGVPVITGKGLRHSHASYLINVLKKDILYVARRMGHADKSTTLNTYSH 368


>gi|88799619|ref|ZP_01115195.1| integrase/recombinase (XerC/CodV family) protein [Reinekea sp.
           MED297]
 gi|88777704|gb|EAR08903.1| integrase/recombinase (XerC/CodV family) protein [Reinekea sp.
           MED297]
          Length = 332

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 49/326 (15%), Positives = 95/326 (29%), Gaps = 63/326 (19%)

Query: 56  PKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT 115
            K E I+     P   K  + ++R       LA  +  ++  +  + IR S     +   
Sbjct: 2   KKPEPIDIRIALPEKPKGFLDQFRVFIRSRGLAYATEKTYLLWAKRYIRFSKYQSPKDFK 61

Query: 116 TKHIRSGVESRKH----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE--RPKRKTE 169
            + I S +         +P++    L ++ +L+     +E++  +    ++    KR+ +
Sbjct: 62  LQDIDSFLNYLAQQRFCSPNTQATALNALILLY-----REFLGFD-TTGLDFNYAKRRPK 115

Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ 227
                +K +          G   +L  + +  SGLR S++    V+ +   N    +   
Sbjct: 116 IPTVLSKSEADAIIQ--ELGGVQKLVTQLMYGSGLRISEALNLRVKDIDFANGGLFVMEA 173

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFIN----------------------------- 258
           K        LP    + L       E  F                               
Sbjct: 174 KGDKSRRTLLPSSLHQSLTSQIAFVEHTFEADQSIGKAGVYLPDALSRKWPNAQFELGWQ 233

Query: 259 ----------------NDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
                             +  ++  Q     K       +NK  S H  R   AT     
Sbjct: 234 YLFPSNVYSVDPRSGVERRHHISRDQVQRAIKRAVKGLKINKRVSCHTFRHSFATELLRQ 293

Query: 301 GATAHELMATYGWKTVDQAETYTKGA 326
           G     +    G  +V+  + YT   
Sbjct: 294 GTDIRNIQEILGHSSVETTQIYTHVV 319


>gi|172058627|ref|YP_001815087.1| integrase family protein [Exiguobacterium sibiricum 255-15]
 gi|171991148|gb|ACB62070.1| integrase family protein [Exiguobacterium sibiricum 255-15]
          Length = 275

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 42/246 (17%), Positives = 90/246 (36%), Gaps = 15/246 (6%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFK 145
           S +  +  ++ S   Q+     ++  + +     +     +++ P++A++   ++  L  
Sbjct: 16  SYSKQTIKAYRSDLRQMKTNRVEWSVKSLQLYFDQLI---QQYKPATAMRRYHALMALGH 72

Query: 146 WAVRQEYVAINPCLSVERPKRKT---EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202
             VR + +  NP   V     +        P  +E +Q  +      S  RL FE +  +
Sbjct: 73  ELVRAKRLKNNPMRQVRPIVHQYVHQREYYPL-EEAIQTIRQI--NHSTYRLFFELISQT 129

Query: 203 GLRCSDSCRAGVQHLQNNIFS--IKTQKTGTIITVELPDGFMKLLAMTPIGKET--FFIN 258
           GLR  ++    ++ +Q    +  ++  K   + TV L +G +  L     G+ T   F +
Sbjct: 130 GLRFMEARLLSIEDIQFGTLTLLVRHGKGRRLRTVPLGEGLVSKLQTFLAGRTTGLIFQS 189

Query: 259 NDKQKMNATQFSIWFKAKATK-AGVNKSAHGVRKFSATISADAG-ATAHELMATYGWKTV 316
              + +N        + ++    G     H +R   AT           E+    G  + 
Sbjct: 190 VRGKAINEQSARDTLRKQSLATCGRPLHPHDLRVAFATHLYQVEDCKLVEIQRLLGHGST 249

Query: 317 DQAETY 322
              E Y
Sbjct: 250 RTTEGY 255


>gi|301159298|emb|CBW18813.1| bacteriophage integrase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|323131083|gb|ADX18513.1| site-specific recombinase, phage integrase family [Salmonella
           enterica subsp. enterica serovar Typhimurium str. 4/74]
          Length = 398

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 53/340 (15%), Positives = 113/340 (33%), Gaps = 35/340 (10%)

Query: 19  GKIIYYFRK-----------GHGRRIRLPYPHESTFIPAYMSALT-GSTPKREYINSPRK 66
           GK ++ FR            G G    L           Y++ L  G  P+ +   +  +
Sbjct: 39  GKKLWRFRYQRPATKQRTMMGLGAFPALSLADARGLRADYLALLANGIDPQIQAEVAEEQ 98

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNS------RISFESYFDQIIRKSGDFDYRKITTKHIR 120
           +   L  + S    +A+W  L   S      +  + S    +    G+   ++I  + + 
Sbjct: 99  QQIALDSIFST--VAANWFQLKSKSVTPDYAKDIWRSLEKDVFPAIGETPVQQIKARTLV 156

Query: 121 SGVESRKHTPS--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP--KRKTEGIRPWTK 176
             +E  K   +  +  + +  +  +  +AV    +  NP   +     K K + +     
Sbjct: 157 EALEPIKARGALETVRRLVQRINEIMIYAVNTGLIDANPASGIGMAFEKPKKQNMPTLRP 216

Query: 177 EDMQQFKSFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKT 229
           E++ +        +     R   E+ L + +R S++  A    +  +           K 
Sbjct: 217 EELPKLMRSLVMSNLTVPTRCLIEWQLLTLVRPSEASGARWAEIDLDKKLWTIPAERMKA 276

Query: 230 GTIITVELPDGFMKLLAMTP---IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA 286
                V L    + +L +       +E  F + +  K +    +     K    G    A
Sbjct: 277 KREHIVPLSPQALGILDVMKPISAHREHVFPSRNDPKQSMNSQTANAALKRIGYGGRLVA 336

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAET-YTKG 325
           HG+R  ++T   ++G  A  + A       ++    Y + 
Sbjct: 337 HGLRSIASTALNESGFNADVIEAALAHSDKNEVRRAYNRS 376


>gi|295675249|ref|YP_003603773.1| integrase family protein [Burkholderia sp. CCGE1002]
 gi|295435092|gb|ADG14262.1| integrase family protein [Burkholderia sp. CCGE1002]
          Length = 364

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 53/348 (15%), Positives = 106/348 (30%), Gaps = 62/348 (17%)

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHWGS-LAVNSRISFESYFDQIIRKSGDFDYRKITT 116
           R    SP      L   I  Y ++         N+  +  + F   ++  GD    + ++
Sbjct: 4   RPPFKSPPTDAPRLSEAIEAYIRAKKAKDAWTPNTERANRATFRLTLQHFGDRPIDRFSS 63

Query: 117 KHIRSGVESRKH---------------------------TPSSAIQFLTSMRVLFKWAVR 149
             +   V   K                             P +A + ++ +  LF+W  +
Sbjct: 64  DDMVRFVNLLKQLPANLSKLRVKEGKTLEEVADLDLPPMAPRTAGEHMSRISSLFRWCCK 123

Query: 150 QEY--VAINPCLSVERPKRK-TEGIRPWTKEDMQQFKSFWSEGSQP-RLAFE-----FLL 200
            E   +  NP       K++ T   RP+T +++    S     ++  R  +E       +
Sbjct: 124 VEQFPITFNPAEEFAAGKKQATYERRPFTNDELALLFSSAEFAARRFRFPYEYWLMPLAI 183

Query: 201 YSGLRCSDSCRAGVQH-----------LQNNIFSIKTQKTGTIITVELPDG-----FMKL 244
           Y+G R  + C+  +             + +       +       V +         ++ 
Sbjct: 184 YTGARLGELCQISLADFVEIEGVHCIAINDEQPEQSLKNDNARRLVPIHSELIVLGLLRY 243

Query: 245 LAMTPIGKET-FFINNDKQKMNATQFSIWFKAKATKAGVNKS----AHGVRKFSATISA- 298
           +    +  E   F        ++ + S WF      AGV        H  R    T    
Sbjct: 244 VDCLKVRGEVRLFPELTLTPTSSHEASKWFGRFRRHAGVTAKQETVFHSFRHGFITCLLD 303

Query: 299 -DAGATAHELMATYGWKT-VDQAETYTKGAD-RIRLGIKNSRRISSVV 343
            + G + H++    G +  +   + Y    D R R  I     + + V
Sbjct: 304 DERGISEHQIAPIVGHEAKLVTGQVYWNKKDARKRKPIVEMFALDASV 351


>gi|134298368|ref|YP_001111864.1| phage integrase family protein [Desulfotomaculum reducens MI-1]
 gi|134051068|gb|ABO49039.1| phage integrase family protein [Desulfotomaculum reducens MI-1]
          Length = 383

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 45/312 (14%), Positives = 93/312 (29%), Gaps = 37/312 (11%)

Query: 49  SALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSG 107
             +     + E         T L   +  + +     +LA  +  S+    +  II   G
Sbjct: 44  KEMARLIAEYETGQYIEPSKTCLGDYMLRWLEDYGKPNLAPTTYYSYSKIVEKHIIPSIG 103

Query: 108 DFDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165
                K+   H++     +  T    +       ++     AV+ + +  NP  +V+ PK
Sbjct: 104 SIIIEKLQPMHLQRYYSQKLQTLSNRTVQYHHRVLKEALSHAVQWQLLNRNPADAVQAPK 163

Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-------- 217
            K + I      ++ +      +     +     +++G+R  +      Q L        
Sbjct: 164 NKQKEIELPDLSNIDRMIQASKDH-PDHIIIISAVFTGMRRGELLGLRWQDLDFDKNLLY 222

Query: 218 ---------QNNIFSIKTQKTGTIITVELPDGFMKLLA--------------MTPIGKET 254
                        F  + +   +   + +P     LL                     + 
Sbjct: 223 VRNTLQRLPDKGKFFTEPKSKKSRRQIIIPHFLTNLLKDHRKKQLEERFKLGHLYQDHDL 282

Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGW 313
            F   D    +    S  FKA   K G+     H +R F AT+         ++    G 
Sbjct: 283 VFPRPDGTPADPGTVSHRFKALVDKIGLSGLRFHDLRHFHATLLLAENINPKKVQERLGH 342

Query: 314 KTVD-QAETYTK 324
           +T+    + Y+ 
Sbjct: 343 QTISLTLDVYSH 354


>gi|325299287|ref|YP_004259204.1| integrase family protein [Bacteroides salanitronis DSM 18170]
 gi|324318840|gb|ADY36731.1| integrase family protein [Bacteroides salanitronis DSM 18170]
          Length = 396

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 54/274 (19%), Positives = 89/274 (32%), Gaps = 38/274 (13%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRK----HT 129
           S YR+S             +  Y  + IR  G  D  +  IT +   + +   K    H 
Sbjct: 126 SSYRQS-----------KMYHYYLGEYIRSLGKEDMLFTDITEEFGTNFILYLKTNYPHK 174

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---W 186
           PS     L  ++ L   AV    +  NP   ++  K+    +   ++  +Q+  S     
Sbjct: 175 PSYRNHCLCWLKRLVYLAVDNGILRYNPLDDIKYEKKAPAKLMYISRNQLQEIMSHPKPD 234

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---NNIFSIKT--QKTGTIITVELPDGF 241
                 R  F F  + GL   D       H+         I+T  +KT     + L    
Sbjct: 235 PLQELARRTFIFSCFCGLAYVDVRNLYPHHIGTTAEGRKYIRTYRKKTSVESFIPLHPVA 294

Query: 242 MKL--LAMTPIGKETFFINNDKQ----KMNATQFSIWFKAKATKAGVNKSAHGVRKFSAT 295
            ++  L  T    +  F    +     +++   FS+ FK        N S H  R    T
Sbjct: 295 EQIISLYNTTDDSQPIFPLPIRSMIWFEIHELGFSLQFKH-------NLSYHQSRHTFGT 347

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           +   AG     +    G   +   + Y K  D  
Sbjct: 348 LMVSAGVPMESISKMMGHTNIRTTQGYAKVTDDK 381


>gi|218282387|ref|ZP_03488669.1| hypothetical protein EUBIFOR_01251 [Eubacterium biforme DSM 3989]
 gi|218216673|gb|EEC90211.1| hypothetical protein EUBIFOR_01251 [Eubacterium biforme DSM 3989]
          Length = 300

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 39/267 (14%), Positives = 79/267 (29%), Gaps = 24/267 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRK---ITTKHIRSGVESRK--HTPSSAIQFLTS 139
              +  +  S+    D  +    D    K   I+   I + ++     H  SS  + + S
Sbjct: 18  QRKSKKTVQSYLHDIDVYLDFLKDRKISKCENISVLDIEAFLDFYAEDHVASSLNRMIAS 77

Query: 140 MRVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG---SQPRL 194
           +                 +  L +   K         + +++++  S + +       + 
Sbjct: 78  IHSF--HLQISTMHPEIKDVSLLIHGMKSSKHLPVYLSVDEVKKVFSSFQDNEIDQYNKT 135

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDG--------FMKLL 245
               L   GLR S+ C   +  +      +K +  G     + +              + 
Sbjct: 136 ILVVLYSCGLRVSELCDLKLNDVHLTEQILKVKGKGDKERIIPISSYCVSQMKYYLDSIR 195

Query: 246 AMTPIGK-ETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGA 302
            +  +     FF+N            +  K K  +  +N   SAH  R   AT   D  A
Sbjct: 196 FVWDVKNVSYFFVNRLGHICTRQYVHLMIKQKVNELNLNPKISAHSFRHSFATHLLDGDA 255

Query: 303 TAHELMATYGWKTVDQAETYTKGADRI 329
               +    G   +   + YT   D+ 
Sbjct: 256 DLRIVQELLGHSNISTTQIYTHIQDKR 282


>gi|302560192|ref|ZP_07312534.1| traSA:integrase fusion protein [Streptomyces griseoflavus Tu4000]
 gi|302477810|gb|EFL40903.1| traSA:integrase fusion protein [Streptomyces griseoflavus Tu4000]
          Length = 436

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 66/379 (17%), Positives = 109/379 (28%), Gaps = 76/379 (20%)

Query: 11  VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAY----------MSALTGSTPKREY 60
           V  +  RHG  + Y       R R   P  +    ++            A   +   R  
Sbjct: 36  VKAKTDRHGTGLRY-------RARYVGPDGTEKSKSFRDKELRLAKQWLAHIEADMSRGQ 88

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
              PR   TT +     + ++ H G +                   G         +HIR
Sbjct: 89  YVDPRVSRTTFRQYAERWVQT-HTGEINSREAAERRLRLHAY-PHIGSRPLGSFKPEHIR 146

Query: 121 SGVESRKHTPSSAIQ---FLTSMRVLFKWAVRQEYVAINPCLS--VERPKRKTEGIRPWT 175
           + + + + T  +       + ++      AV    ++ NPC +  V+ PK     + PWT
Sbjct: 147 AWIAALEATVPAESHRRIIVGTVSAALSAAVDDGLLSKNPCRARTVQLPKAGKPRVVPWT 206

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-------- 227
            E +  F    +   + + A +     GLR  +     +  L      +           
Sbjct: 207 AEQV--FGVRAALPRRYQAAVDAGAGCGLRQGEIFGLAIDELDLEGGWLAVGHQLKRIRG 264

Query: 228 -------KTGTIITVELPDGFMKLLA---------------MTPIG----KETFFINNDK 261
                  K G +  V LP     +L                 TP G    K   F   + 
Sbjct: 265 KYVFALPKGGKVRDVPLPKAVATVLRDHTEECEPIAVTLPWRTPDGPLVTKRLIFSGAEG 324

Query: 262 QKMNATQF-SIWFKAKATKAGV--------------NKSAHGVRKFSATISADAGATAHE 306
             +  + F    +K     AG+                  H +R F A++  DAG     
Sbjct: 325 NHVRVSVFNDHHWKPALATAGIIPQAQPGERYASAREHGMHALRHFYASVLLDAGENIRA 384

Query: 307 LMATYGWKTVD-QAETYTK 324
           L    G         TYT 
Sbjct: 385 LSQYLGHSDPGFTLRTYTH 403


>gi|172055243|ref|YP_001806570.1| integrase/recombinase [Cyanothece sp. ATCC 51142]
 gi|171701524|gb|ACB54504.1| probable integrase/recombinase [Cyanothece sp. ATCC 51142]
          Length = 211

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 24/172 (13%), Positives = 46/172 (26%), Gaps = 13/172 (7%)

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQ--HL 217
           P ++          ++++  +   +    G +           GLR S+ C    +    
Sbjct: 28  PYKEKRPREYLVPHEVEELIAVAKKRGRYGHRDATMILLTYRHGLRVSELCALRWEQIDF 87

Query: 218 QNNIFSIKTQKTGTIITVEL----PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF 273
              +F ++  K G      L         KL   +P      F+      M    F    
Sbjct: 88  DTGLFHVQRLKQGLPSVHPLRGPELRALRKLKRESPPS-SYLFVTERGSPMTTAGFRKLL 146

Query: 274 KA--KATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
               + +        H +R        + G     +    G K +     YT
Sbjct: 147 TRVAECSSISFPVHPHMLRHACGYKLVNDGHDIRMIQQYLGHKNIQHTVRYT 198


>gi|323344353|ref|ZP_08084578.1| integrase [Prevotella oralis ATCC 33269]
 gi|323094480|gb|EFZ37056.1| integrase [Prevotella oralis ATCC 33269]
          Length = 409

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 40/260 (15%), Positives = 84/260 (32%), Gaps = 27/260 (10%)

Query: 88  AVNSRISF---ESYFDQ-IIRKSG--DFDYRKITTKHIRSGVE----SRKHTPSSAIQFL 137
              +  S+     +    I  K    D  + ++    +            H+     +  
Sbjct: 130 KATTLKSYYTTRKHLQAFISEKYHTTDILFGQLEEDFLECLQHYSVGKLGHSQGYYRKMA 189

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG-----SQP 192
            +++ + + A R+          VE  + + +  R   +  + + ++   E         
Sbjct: 190 LTVKKVCRLAYREGLTERQLFAHVEIERGENKQPRALDRASLDKLQALTFEPYEVELETA 249

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHL-----QNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
           R  F F  ++G+   D      +HL            + QKT  +  V+L    + L+A 
Sbjct: 250 RNLFLFSCFTGVAYCDMVALNREHLFTDDEGGLWLKFRRQKTENLCRVKLLPEAVHLIAQ 309

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS-ADAGATA 304
               + T         +  + + +  KA   +AG+    SAH  R   AT+   + G   
Sbjct: 310 YQSDERTTLFA----PIPYSVYLVQLKALQLRAGISIPLSAHVGRHTFATLITLERGVPI 365

Query: 305 HELMATYGWKTVDQAETYTK 324
             +    G + +   E Y  
Sbjct: 366 ETVSRMLGHRNIQTTERYAH 385


>gi|291166427|gb|EFE28473.1| site-specific recombinase, phage integrase family [Filifactor
           alocis ATCC 35896]
          Length = 372

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 47/342 (13%), Positives = 98/342 (28%), Gaps = 50/342 (14%)

Query: 41  STFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG--------SLAVNSR 92
             F   Y   L GS              +  ++LI        +          L   + 
Sbjct: 34  PAFFRDYFIFLKGSVSISSRYAYLIDIYSFFEYLIDSKFFETEYSSVKQIKQSDLKNITA 93

Query: 93  ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEY 152
                Y  +  RK        +     ++   SRK          +S+  LFK+  R E 
Sbjct: 94  REINYYIGEYCRKYEVKKEDTVVIFENQNKSLSRKK---------SSLTSLFKFLFRNEQ 144

Query: 153 VAINPCLS---VERPKRKTEGIRPWTKEDMQQFKSFWSEGS---------------QPRL 194
           +  N       ++ PK   + I+  + ++  +     + G                + + 
Sbjct: 145 MKHNLIDGFNPIKMPKLNPDAIKRLSIDETNELIHVINTGIGLTNHEKIYWEKTKYRDKA 204

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTP---- 249
                +  GLR S+  +  +  +      I   +K G  + +   D     +        
Sbjct: 205 IIMIFITLGLRLSELEQLNITSINFKRKEILVFRKRGKEVLMPFNDTIEHSILQYINLER 264

Query: 250 ------IGKETFFINNDKQKMNATQFSIWFKAKATK---AGVNKSAHGVRKFSATISADA 300
                    +  F++   ++M   Q     K   +         S H +R   A+   + 
Sbjct: 265 NHIIINDENDPLFLSLQGKRMTGRQIRQMIKKYTSIVLGDNEGYSPHKLRSTLASSLIER 324

Query: 301 GATAHELMATYGWKTVDQAETY-TKGADRIRLGIKNSRRISS 341
           G + +++        V   + Y +   +  +  I+N   I  
Sbjct: 325 GFSIYDVQNLLDHDNVTTTQIYASHKKNVKKNIIENIDYIED 366


>gi|283769269|ref|ZP_06342173.1| site-specific recombinase, phage integrase family [Bulleidia
           extructa W1219]
 gi|283104245|gb|EFC05624.1| site-specific recombinase, phage integrase family [Bulleidia
           extructa W1219]
          Length = 387

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 61/365 (16%), Positives = 128/365 (35%), Gaps = 53/365 (14%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAY--------MSALTGSTPKREY 60
           P  +K +    K++  +R     ++ +       +I  Y        M+A+      +E 
Sbjct: 8   PICSKTKGEGFKVLAKYRNKEAGKL-VSVSGGRFYISDYEGDKKLAKMAAIKSRNKIQED 66

Query: 61  INSPRKKPTTLKWLISE-YRKSAHWGSLAVNSRISFESYFDQII-RKSGDFDYRKITTKH 118
           I+  R    +L   + E Y+KS     L+V +    +S +  +I  +    +  K+TT  
Sbjct: 67  IDIGRYASKSLT--VDECYKKSLMDLQLSVKTIRRHDSIYRHLISDEVKLKNIIKVTTSD 124

Query: 119 IRSGVE--SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT---EGIRP 173
           +++ +   S+  + ++    ++  R ++K A+  E   +N    V  PK +         
Sbjct: 125 VQNSINDFSKDRSQNNINNAMSIWRQIYKAALIAEIPVVNRAEMVMVPKSRKVVIPKDNK 184

Query: 174 WTKEDMQQFKSFWSE-GSQPRL----------AFEFLLYSGLRCSDSCRAGVQHLQNNIF 222
              ED ++F +       + +           A + + Y+GLR  +        +  +  
Sbjct: 185 LNIEDFEKFLNELLIYNCRQKRGLYKATCLWYACQIMYYTGLRPQEVYALSRSDIDLDKR 244

Query: 223 SIKTQKTGTIIT-----------------VELPDGFMKLLAMT---PIGKETFFINNDKQ 262
            +   K+    T                 V +P G +K+L        GK+  FI+ D  
Sbjct: 245 QLHVNKSIGSTTESTRQVIPVKTKYSNSIVPIPPGLVKVLENLLEWSKGKDLIFIDLDGL 304

Query: 263 KMNATQFSIWF----KAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
                  S       +    K G + + + +R   +    DAG     + +     T + 
Sbjct: 305 PYEIDDVSNLICHVSRLCKKKYGFSFNQYRLRHLFSKDLFDAGINPKVIQSLMRHATENM 364

Query: 319 AETYT 323
           +  Y 
Sbjct: 365 SLYYA 369


>gi|212695080|ref|ZP_03303208.1| hypothetical protein BACDOR_04618 [Bacteroides dorei DSM 17855]
 gi|212662396|gb|EEB22970.1| hypothetical protein BACDOR_04618 [Bacteroides dorei DSM 17855]
          Length = 407

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 51/291 (17%), Positives = 96/291 (32%), Gaps = 43/291 (14%)

Query: 86  SLAVNSRISFESYFDQIIR------KSGDFDYRKITTKHIRSGVESRK----HTPSSAIQ 135
           +    S  S+ + ++ + R         D  +  +    I       +      P + I 
Sbjct: 127 NRTEGSLRSYRNAYNHVERFLLEKYNLSDIPFSALNRSFIDDYDLHLRTDCHLAPGTIIN 186

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVE--RPKRKTEGIRPWTKEDMQQFKS---FWSEGS 190
               ++++   A+    + + P    E  RPK+K    R  T E++Q+  +      +  
Sbjct: 187 LTVQLKIIVGEAIADGIITVYPFAGYEPVRPKQKK---RYLTSEELQRIMTTPLHKPKLY 243

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHL---QNNIFSIK--TQKTGTIITVELPDGFMKLL 245
             R  F F  Y+G+   D      +HL    +  + I+   +KTG    + L D  + ++
Sbjct: 244 LIRDMFLFSCYTGIPYGDMRLLSKEHLSLADDGTWWIRSSRKKTGIEFEIPLLDLPLCII 303

Query: 246 ---AMTPIGKETFFINNDKQKMNATQFSIW-FKAKATKAGVNKS--AHGVRKFSATIS-A 298
                T      F        M +     +  K  A    ++     H  R   AT    
Sbjct: 304 EKYRDTAPDGRLF-------PMYSNSVMNYNLKHIARLCQIDCPLVFHAGRHTYATEITL 356

Query: 299 DAGATAHELMATYGWKTVDQAETYTK------GADRIRLGIKNSRRISSVV 343
             G     +    G   ++  + Y K       AD   L  + + R S V+
Sbjct: 357 GHGVPLETVSKMLGHSQIETTQIYAKVTDDKINADTRILDERIAERFSVVI 407


>gi|167899188|ref|ZP_02486589.1| site-specific recombinase, phage integrase family protein
           [Burkholderia pseudomallei 7894]
          Length = 270

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/219 (14%), Positives = 64/219 (29%), Gaps = 39/219 (17%)

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA-- 195
             + ++F  AVR+     NP   +   K +T+  R  T +++   ++     +  + A  
Sbjct: 39  RLLSLIFAHAVRRGLRDRNPAREIGSAK-ETKRDRYITDDELDTVRAAIVASADDKTASA 97

Query: 196 ------FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT----GTIITVELPDGFMKLL 245
                  +    +  R  D      Q + ++  S +  +T    G  + +E+     + L
Sbjct: 98  RSFLCLIDLAYQTAQRIGDLLALNWQDVSDDGISFRPSQTVNRSGVRLLIEMTPDLQETL 157

Query: 246 AMTPIGK----ETFFINNDKQKMNATQFSIWFKAKATKA-------------------GV 282
                GK          +   +         +K    +A                    +
Sbjct: 158 NRARGGKIASIGPMICTHAGGRYTYIGAYSGWKRACLRARSAYEKDCKKKGITPNPKYLI 217

Query: 283 NKSAHGVR-KFSATISADAGATAHELMATYGWKTVDQAE 320
               H +R K         GA A +  +  G  T     
Sbjct: 218 GMHFHDLRAKALTDPKRQQGAAAAQ--SLAGHTTESMTA 254


>gi|326330215|ref|ZP_08196526.1| traSA:integrase fusion protein [Nocardioidaceae bacterium Broad-1]
 gi|325952028|gb|EGD44057.1| traSA:integrase fusion protein [Nocardioidaceae bacterium Broad-1]
          Length = 416

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 66/366 (18%), Positives = 113/366 (30%), Gaps = 70/366 (19%)

Query: 32  RIRLPYPHEST---------FIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSA 82
           R+R   P                 +   L     K +Y++ P       K    ++ KS 
Sbjct: 21  RVRWREPDGQERSRTFEKKIEATRFRDVLAADIVKGQYVD-PTAGKIAFKTFAEQWLKSQ 79

Query: 83  HWGSLAVNSRISFESYFDQII----RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFL- 137
            +  L      ++E+   ++        G+     IT   IR+ +        +  Q L 
Sbjct: 80  TYDEL------TYEAVELRLRLHATPHLGNLALNDITPTTIRNWLRQLNGLAPTYRQVLF 133

Query: 138 TSMRVLFKWAVRQEYVAINPCLS--VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195
            ++  +   AV  E +  NPC +  V RPK   + +RPWT+E +   ++   E  Q RL 
Sbjct: 134 ANVSTVLTAAVDDELITNNPCKAPSVSRPKVIPKELRPWTRERVIAVRNKLPE--QFRLV 191

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ----------------KTGTIITVELPD 239
                  GLR  +        +      +  Q                K G    V LPD
Sbjct: 192 VWLGAGLGLRQGEIFGLSPGDIDFERGEVHVQRQVKVLSNNRLLFSLPKGGKTRRVPLPD 251

Query: 240 GFMKLLAMTPIGKE-------------------TFFINNDKQKMNATQFS-IWFKAKATK 279
              + +      +                        + ++  +N   F+   ++   T+
Sbjct: 252 VVHEAITAHMTARPPVDVTLPWATRAGNEVTVPLLLYSRERGALNRNYFNPKIWRPALTR 311

Query: 280 AGVNK----SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTK----GADRIR 330
           A V        H +R F A++    G T   L    G         TYT      A R +
Sbjct: 312 ADVPAVRENGCHALRHFYASVVLHEGETIKALAEYLGHADPGFTLRTYTHLMEGSAARTK 371

Query: 331 LGIKNS 336
             +   
Sbjct: 372 RALDGV 377


>gi|323693105|ref|ZP_08107324.1| integrase [Clostridium symbiosum WAL-14673]
 gi|323502859|gb|EGB18702.1| integrase [Clostridium symbiosum WAL-14673]
          Length = 432

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 62/432 (14%), Positives = 131/432 (30%), Gaps = 102/432 (23%)

Query: 12  TKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
            +++ +     +Y     G  ++  Y    +                      + +  T+
Sbjct: 6   VRKKGKKWYYRFYVENESGNLVQKEYAGTESKSETEALLRKAMEDYEAKKFVAKSENVTV 65

Query: 72  KWLISEY-RKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVESRK-- 127
             L+  +  +    G+LA  +   ++S  ++I +   GD   + +T  H+++  +     
Sbjct: 66  GNLLDMWVEEELKPGNLANGTVSLYQSTIERIKQYPIGDRKLKTVTPDHLQAFFDLLAFG 125

Query: 128 --------HTPSSAIQFL---TSMRVLFKWAV-RQEYVAINPCLSVE-RPKRKT-EGIRP 173
                     P ++         M+  F++AV  +  +  NP   V+ R K++T E    
Sbjct: 126 GEKPDGSEAKPLASNSIRPYSAVMQAAFRFAVFPKRLMTFNPMQYVKIRHKQETYELFNE 185

Query: 174 WTKEDM-------QQFKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222
            +++ +       +Q+K+       + +   L  +   Y+GLR  + C    Q +     
Sbjct: 186 NSEDGLTVPTISFEQYKALTDYLKKKENPALLPVQIAYYTGLRIGEVCALTWQDIDMREQ 245

Query: 223 SIKTQ-----------------KTGTIITVELPDGFMKLLAMTPIG--------KETFFI 257
           +I  +                 K G I TV+  D    +L               E + +
Sbjct: 246 TITVRRSMRYNGTRHKTEVSTTKRGKIRTVDFCDTLAAILKAAKTEQHKNRFKYGELYSL 305

Query: 258 NNDK----QKMNATQFSIWFK-----------------------------AKATKA---- 280
           N  K    +  +  +     +                                  A    
Sbjct: 306 NYYKQVQEKGRSYYELYSLQRSEEVPEDYKEIDFVCLRPDGCFESSSTVSIACRTASKKI 365

Query: 281 -GVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TY---TKGADRIRLGIK 334
            G+     H +R    +     GA   ++    G   V      Y   T+ A R      
Sbjct: 366 PGLEGFHFHQLRHTFTSNLLSNGAAPKDVQELLGHADVSTTMNIYAHSTREAKR-----S 420

Query: 335 NSRRISSVVDSD 346
           ++R +  VV  D
Sbjct: 421 SARLLDKVVGGD 432


>gi|77734449|emb|CAJ26231.1| integerase-recombinase [Thermotoga petrophila RKU-1]
          Length = 190

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/197 (19%), Positives = 69/197 (35%), Gaps = 25/197 (12%)

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAI-----NPCLSVERPKRKTEGIRPWTKEDMQQ 181
           K+TP++    L  ++    W   +  + I     N       P R T   +    +++++
Sbjct: 9   KNTPATQRNKLVVVKNYLNWKADRGLLNIEERFWNEAE----PPRHTVLPKAIELDEVRR 64

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN---IFSIKTQKTGTIITVELP 238
                   S  R  F+ L  +G+R S+     V  +  N      IK +     I + + 
Sbjct: 65  IIEACD-NSLYRAIFKVLANTGMRVSEIVNLSVHDISVNETARIRIKGKGNKERI-IXIS 122

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATI 296
              ++ L         FF     +K +        K  A KAG+ K  + H  R   A  
Sbjct: 123 KELVEELM-----NSGFFE----KKPSVRSIQRAVKRYARKAGIKKKVTPHIFRHSFAVA 173

Query: 297 SADAGATAHELMATYGW 313
             + G   +++ A  G 
Sbjct: 174 LIERGVPLNKIQALLGH 190


>gi|315637161|ref|ZP_07892383.1| phage integrase family site-specific recombinase [Arcobacter
           butzleri JV22]
 gi|315478528|gb|EFU69239.1| phage integrase family site-specific recombinase [Arcobacter
           butzleri JV22]
          Length = 350

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/185 (17%), Positives = 69/185 (37%), Gaps = 19/185 (10%)

Query: 165 KRKTEGIRPWTKEDMQQFKSFWSE-------GSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217
           K  T+      K+++ +F     +       G + RL  + ++Y+G+R S+     ++ +
Sbjct: 160 KSGTKLPSFMNKDEIDRFLKAIDDFEFTDNTGFRNRLIIKIIIYTGIRVSEILNLRIKDI 219

Query: 218 --QNNIFSIKTQKTGTIITV------ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF 269
             ++N++ ++ +  G    V       +       L M     +    N   +++     
Sbjct: 220 FKEDNVYMLQIKGKGNKPRVVMIKSSIIEKELQNWLDMRVCNSDLLVCNQKGERLTQAYI 279

Query: 270 SIWFKAKATKAGVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           S   +     AG+ K    AH +R   AT+          +    G   ++ +  YT   
Sbjct: 280 SRVVENILISAGIRKEKNGAHMLRHSFATLLYQKHHDLILVQEALGHADINTSRIYTH-F 338

Query: 327 DRIRL 331
           D+ RL
Sbjct: 339 DKERL 343


>gi|157375602|ref|YP_001474202.1| putative pore-forming cytotoxin integrase [Shewanella sediminis
           HAW-EB3]
 gi|157317976|gb|ABV37074.1| putative pore-forming cytotoxin integrase [Shewanella sediminis
           HAW-EB3]
          Length = 381

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 48/296 (16%), Positives = 98/296 (33%), Gaps = 43/296 (14%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKH 128
                 +Y   + +   A ++ +S  S    ++   G    R I+   I+       R+ 
Sbjct: 8   FNDYAKQYLAESKF-DKAHSTYVSECSKVKNLVSFFGKKQIRSISQSDIKRWKIKVHRRF 66

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           +  +  +  T +R +F  A+    +  NP   VE  K  T   +P  +E++ +  +  ++
Sbjct: 67  SNKTINEHFTILRAIFSCALSDCVLGRNPMTGVENLKIHTAEPKPLGREELLKLHATPAQ 126

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQK----------TGTIITVE 236
               +      + +GLR S+           ++    + T K          T +I TVE
Sbjct: 127 CESGKALLFLGVLTGLRISELIALTWDCIDFESREIKVHTAKVLGKYKVPKTTSSIRTVE 186

Query: 237 LPDGFMKLLA-----------------------MTPIGKETFFINNDKQKMNATQFS--- 270
           +      LL                        +     +  FIN+   K          
Sbjct: 187 MNQHAFALLKKHYEVTGSLRPRVIRVLQNDNKTIEKRRVQHLFINSQSNKPFIDSKQYSK 246

Query: 271 IWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
            +F     KA V ++  + +R   A+    AG +   +    G  + +   + Y +
Sbjct: 247 TFFTPFLVKASVQHRGPNQLRHTFASQCLTAGISKEWIARQLGHNSTNMVDKHYAR 302


>gi|153811011|ref|ZP_01963679.1| hypothetical protein RUMOBE_01402 [Ruminococcus obeum ATCC 29174]
 gi|149832899|gb|EDM87982.1| hypothetical protein RUMOBE_01402 [Ruminococcus obeum ATCC 29174]
          Length = 407

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 45/317 (14%), Positives = 104/317 (32%), Gaps = 65/317 (20%)

Query: 85  GSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIR---SGVESRKHTPSSAIQFLTS 139
            ++  ++R +++SY+   I     G     +I   H++   + +  + ++P +   +   
Sbjct: 84  KNIRDSTRCNYKSYWKNAIAPSALGIMKISEIKQIHVKRLYADLLEKGYSPGTIRAYHII 143

Query: 140 MRVLFKWAVRQEYVAINPCLSVER-PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEF 198
           +    + AV  + +  NP     +   ++    R  T E+ +    F    +  ++ +  
Sbjct: 144 LSECLQAAVDSDMIRKNPAKGSRKGIDKEVSRKRALTIEEQETMLEFTKNSNSYKIHYPL 203

Query: 199 LLY---SGLRCSDSCRAGVQHLQN--NIFSIKTQ-------KTG------------TIIT 234
           +++   +GLR  +        +    N+  ++ Q        TG                
Sbjct: 204 IVFALSTGLRVGELGGLLWDDIDLEKNMIHVRRQLVYRNLDGTGCKFHIQPLKTEAGERD 263

Query: 235 VELPDGFMKLLAMT--------------PIG--KETFFINNDKQKMNATQFSIWFK---- 274
           + L     K L                 P+   K   F+N+   ++         +    
Sbjct: 264 IPLTKTAKKALMKQREYDLLLGKRAKEQPVAGLKNFVFLNHQGNQLAPQVLDSALRNIIK 323

Query: 275 ----AKATKAG---------VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-E 320
                +  +A           + SAH +R    T +A++G     L    G   +    E
Sbjct: 324 AYNKKELKQADKEHGEPFLLPHISAHILRHTFCTRAAESGVDVKSLQYIMGHADITMTME 383

Query: 321 TYTKGADRIRLGIKNSR 337
            Y    D +R+  + S+
Sbjct: 384 RYNH-VDEVRVQNEMSK 399


>gi|126665396|ref|ZP_01736378.1| putative integrase/recombinase [Marinobacter sp. ELB17]
 gi|126669108|ref|ZP_01740038.1| putative integrase/recombinase [Marinobacter sp. ELB17]
 gi|126626435|gb|EAZ97102.1| putative integrase/recombinase [Marinobacter sp. ELB17]
 gi|126630024|gb|EBA00640.1| putative integrase/recombinase [Marinobacter sp. ELB17]
          Length = 331

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 39/274 (14%), Positives = 86/274 (31%), Gaps = 37/274 (13%)

Query: 85  GSLAVNSRISFESYFDQII--------RKSGDFDYRKITTKHIRSGVESRKH----TPSS 132
            +LA+N++ S+     Q++        +          + + +R  +   +     T S+
Sbjct: 23  RNLALNTQKSYRDMLMQLLPYLAGKANKAIDRLTVDDFSPQAVRLFLSHMEQQRNCTIST 82

Query: 133 AIQFLTSMRVLFKWAVRQ-----EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
             Q L  +  L ++          + A      +   K     I    K +M    +   
Sbjct: 83  RNQRLGGIHALARFIAEHSPEHIGWCAQ--IRLIPFKKTSQPAIIYLDKPEMDALLAAPD 140

Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-----IITVELP 238
           + +    + +    FL  SG R S++ +  +  +  +   ++    G       +     
Sbjct: 141 DHTEQGRREQALLLFLYNSGARVSEAVQLKIGDIDWHAQCVRVVGKGNKQRRCPLWTSTL 200

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK--------AGVNKSAHGVR 290
           +    L+       +  F+N   Q M  +      K  A +             S H +R
Sbjct: 201 ERLHVLVDGR-EATQPVFLNRCHQPMTRSGIHTLVKRCAARACARAPSLLNKPVSPHVIR 259

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             +A     AG   + + A  G  ++     Y +
Sbjct: 260 HSTACHLLQAGVDINTIRAWLGHVSLTTTNIYAE 293


>gi|91786615|ref|YP_547567.1| phage integrase [Polaromonas sp. JS666]
 gi|91695840|gb|ABE42669.1| phage integrase [Polaromonas sp. JS666]
          Length = 311

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/286 (10%), Positives = 93/286 (32%), Gaps = 37/286 (12%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
           ++  ++ Y        +   ++           +  G  +  +I  + +R+ ++      
Sbjct: 3   IEQAVATYVGYKQSLGMRFATQA---RMLKSFSKSLGSIEVDRIGPESVRAFLDGNGPMT 59

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF------KS 184
                   ++   +++ + + YV+  P  + E    +T     ++++++++       ++
Sbjct: 60  RYWHCKFGTLAGFYRFCLARGYVSSVPLPTTEPRCPQTFTPYIYSEDEIKRLLQAAAGRA 119

Query: 185 FWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGF 241
           F    +   R     L  +GLR S++    +  +   + +  ++  K      V +    
Sbjct: 120 FCKIDAHTSRTQLLLLYATGLRISEALNLNLADVDLNDRVLYVRRSKFYKTRLVPIGTDL 179

Query: 242 MKLLAMTPIG---------KETFFINNDKQKMNATQFSIWFKAKATKAGVNK-------- 284
            ++L                  F + +  ++++       F+   ++A V +        
Sbjct: 180 TQVLREYARRRYKRSPLDPDAPFLLTSRGERVSRAGAEQAFRQMRSQAKVRRHDGGRYQP 239

Query: 285 SAHGVRKFSA----TISADAGATAH----ELMATYGWKTVDQAETY 322
             H +R  +A          G        +L    G   +   + Y
Sbjct: 240 RLHDLRHTAAVTRLVRWYREGVDVQRLLPQLATYLGHVHISGTQCY 285


>gi|330502011|ref|YP_004378880.1| integrase [Pseudomonas mendocina NK-01]
 gi|328916297|gb|AEB57128.1| integrase [Pseudomonas mendocina NK-01]
          Length = 330

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/320 (12%), Positives = 81/320 (25%), Gaps = 29/320 (9%)

Query: 17  RHGKIIY---YFRKGH-GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           R     +   ++  G  GRRIR            Y S    S          R     L 
Sbjct: 4   RKDGNTWTADFYENGRSGRRIRKKGFKTKAAAQRYESEFFASLNATGRPLDDRLSD--LV 61

Query: 73  WLISEYRKSA--HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
            L  +    +          +  + E   + +        + +     ++        +P
Sbjct: 62  TLWHDLHGCSLKDAKHRLARTLATVERLGNPMASSFDALAWARYRQTRLKDV------SP 115

Query: 131 SSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            +       +  +F   +R   +V  NP   V + K     +   T + ++Q        
Sbjct: 116 HTVNHEQRYLSAVFSELIRLGAWVGNNPLAKVRQIKTDQTELTFLTLQQVEQLLEECKRS 175

Query: 190 SQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
           +           L +G R  ++       L          K     +V +P    ++   
Sbjct: 176 TNNHTYPVALICLATGARWDEAESLPRGALFGGKAHFHRTKNRQSRSVPIPKEVEEIALK 235

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGATA 304
                    +               F++   + G +      H +R   A+     G   
Sbjct: 236 ---------VGMPGNGRLFMPCRSAFRSAYQRCGFHTPGQMTHILRHTFASHYMMGGGDI 286

Query: 305 HELMATYGWKTVDQAETYTK 324
             L    G  T+     Y  
Sbjct: 287 LGLQRILGHSTITMTMRYAH 306


>gi|322835628|ref|YP_004215654.1| lambda integrase [Rahnella sp. Y9602]
 gi|321170829|gb|ADW76527.1| lambda integrase [Rahnella sp. Y9602]
          Length = 374

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 55/356 (15%), Positives = 109/356 (30%), Gaps = 48/356 (13%)

Query: 9   PFVTKERT-RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKRE-------- 59
           P ++     R  K+ + ++     +      +      A   A+  +T   E        
Sbjct: 12  PGLSCYTDARTKKVYWRYKHPETGKFHGLGDNAEE---ARTIAIDANTRLAEQQMVNLIN 68

Query: 60  ---YINSPRKKPTTLKWLISEYRKSAH----WGSLAVNSRISFESYFDQIIRKSGDFDYR 112
               I+   K+  T    I +YR   H     G +  ++  + E      I   G     
Sbjct: 69  VRNEISREVKRGITANAWIEKYRDIQHDRVKAGEIKPDTAKNREPALRAFISLCGIMPLS 128

Query: 113 KITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAI--NPCLSVERPKRKT 168
           ++  + I S ++    K     A     ++  +FK A     V +  NP L+ ++P+ K 
Sbjct: 129 EVGAREIASILDVYIEKGQGRMAQVVRATLSDIFKEAQHAGEVPVGYNPALATKKPRMKV 188

Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
              R    E    + +          +    L +G R  D        + ++   I  +K
Sbjct: 189 SRTRLAFSEWQTIYAATADLPEAAGRSMLLALVTGQRVGDLSSLKFSDIWDDRLHIVQEK 248

Query: 229 TGTIITVELP---------------DGFMKLLAMTPIGKETFFIN-NDKQKMNATQFSIW 272
           TG  I + L                +    +L+   +       N     ++     S +
Sbjct: 249 TGAKIAIPLSLRCNALSVSLRDVIAECRDDVLSKWILHHHRSLKNCERGGQVMKDTLSRY 308

Query: 273 FKAKATKAGVNK------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           F      +G+        + H  R  S  + ++ G          G K+    + Y
Sbjct: 309 FATARDLSGLKWNGGSPPTFHEQRSLSERLYSEQGINT---QVLLGHKSSQMTDKY 361


>gi|260170443|ref|ZP_05756855.1| tyrosine type site-specific recombinase [Bacteroides sp. D2]
 gi|315918797|ref|ZP_07915037.1| integrase [Bacteroides sp. D2]
 gi|313692672|gb|EFS29507.1| integrase [Bacteroides sp. D2]
          Length = 395

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 53/307 (17%), Positives = 100/307 (32%), Gaps = 36/307 (11%)

Query: 48  MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG 107
           M  L G   +        +  +T     S YR+S         S+ +   Y   +  K  
Sbjct: 103 MLLLAGEAERERLRVRSLEINST-----STYRQSKI-------SQNNLREYLLTLKMK-- 148

Query: 108 DFDYRKITTK---HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP 164
           D  +  IT +     +  ++++++         T +  L   AV QE +  NP   V+  
Sbjct: 149 DIAFTDITEEFGEGYKLFLKAKEYKSGHINHCFTWLNRLIYIAVDQEILRFNPIADVKYE 208

Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNN- 220
           K++   ++  ++ +++         +     R AF F  ++ L   D      +H+    
Sbjct: 209 KKEPPKLQHISRNELKLIMEKPMPNTFQELIRRAFIFSAFTALAYVDLKGLYPRHIGRTA 268

Query: 221 ----IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET--FFINNDKQKMNATQFSIWFK 274
                  I  +KT     V L     ++L++     +T   F        N  Q      
Sbjct: 269 EGKPFIRIHRKKTQVEAYVPLHPVAEQILSLYNTEDDTKPVFPL-----PNRDQIWYCIT 323

Query: 275 AKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
                AGV    S H  R    T+    G     +    G   +   + Y K  D     
Sbjct: 324 EIGFLAGVKGNMSYHQSRHTFGTLLLSEGIPIESISKMMGHTNISTTQVYAKVTDMK--I 381

Query: 333 IKNSRRI 339
            ++  ++
Sbjct: 382 SEDMDKL 388


>gi|218513302|ref|ZP_03510142.1| site-specific tyrosine recombinase XerC [Rhizobium etli 8C-3]
          Length = 210

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 56/191 (29%), Gaps = 18/191 (9%)

Query: 158 CLSVERPKRKTEGIRPWTKEDM-------QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210
             ++  PK+     +P +            Q        ++       L   GLR S++ 
Sbjct: 10  AAAIRSPKQPKSLPKPLSDTQAITVVSNEAQLHDEPWIAARDAAVMTLLYGCGLRISEAL 69

Query: 211 RAGVQHLQNNIFSIK-TQKTGTIITVELPD----GFMKLLAMTP---IGKETFFINNDKQ 262
                 L     +++ T K      V L         K  A+ P         F      
Sbjct: 70  DLVPADLPKGAATLRITGKGNKTRLVPLLPVVFDAVEKYRALCPYHLENDAPLFRGARGG 129

Query: 263 KMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
           K+ A       +   +  G+    + H +R   AT     G     +    G  ++   +
Sbjct: 130 KLQAAIIQRAMQKLRSAFGLPETATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQ 189

Query: 321 TYTKGADRIRL 331
            YT G D  RL
Sbjct: 190 VYT-GVDASRL 199


>gi|190149725|ref|YP_001968250.1| tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar
           7 str. AP76]
 gi|307263034|ref|ZP_07544656.1| Phage integrase family protein [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
 gi|189914856|gb|ACE61108.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar
           7 str. AP76]
 gi|306871660|gb|EFN03382.1| Phage integrase family protein [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
          Length = 338

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/249 (16%), Positives = 85/249 (34%), Gaps = 26/249 (10%)

Query: 94  SFESYFDQIIRKSGDFDYRKITTKHIRSG------VESRKHTPSSAIQFLTSMRVLFKWA 147
           S +++      +      + +T++ + +         ++  +P++  ++ +S+  +F  A
Sbjct: 80  SKQAHAQYFRERFHGRTLKSLTSEELINAIPTFCHRRNKPLSPATQNRYRSSLLRIFSLA 139

Query: 148 VRQEYVAINPCLSVERPKRKTEGIRPWTK-----EDMQQFKSFWSEGSQPRLAFEFLLYS 202
            +  +V   P +     K + +    W +     E +   K  W      R    F L +
Sbjct: 140 HKAGWVEKIPFI---MRKNEPKVRVSWLEKSQAAELINSLKLEW-----MRNVCTFALLT 191

Query: 203 GLRCSDSCRAGVQHLQ----NNIFSIKTQKTGTIITVELPDGFMKLLA--MTPIGKETFF 256
           G R S+        +       I S    K+G   ++ L +  + LL    T    +  F
Sbjct: 192 GARMSEILTLTWDKVNFAKNLAIVSNDKAKSGKARSLPLNNKAIDLLQQIKTKSKSKYVF 251

Query: 257 INNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKT 315
           +               F+    K G+     H +R   A+    AG     L    GW+T
Sbjct: 252 VRCSTGHAIGDIDRRDFRQACEKIGMPSFHFHDLRHTWASWHVQAGTPLFTLKEMGGWET 311

Query: 316 VDQAETYTK 324
           ++    Y  
Sbjct: 312 LEMVRKYAH 320


>gi|149022033|ref|ZP_01835995.1| prophage LambdaSa1, site-specific recombinase, phage integrase
           family protein [Streptococcus pneumoniae SP23-BS72]
 gi|147929877|gb|EDK80866.1| prophage LambdaSa1, site-specific recombinase, phage integrase
           family protein [Streptococcus pneumoniae SP23-BS72]
          Length = 375

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 48/355 (13%), Positives = 123/355 (34%), Gaps = 52/355 (14%)

Query: 18  HGKIIYYFRKGHGRRIRLPY---PHESTFIPAY-MSALTGSTPKREYINSPRKKPTTLKW 73
           +GK  Y+ R       +L       E     A   +A+       + +++ + +  T + 
Sbjct: 8   NGKFKYFERYKDPYTEKLKKVSVTMEKKTPQARNQAAILLQEKINKKLSTKQVESITFEE 67

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG-DFDYRKITTKHIRSGVESRKHTPS- 131
           + + + KS    ++  +++ + +S   ++      D     +  + ++  +E    +   
Sbjct: 68  IYNLFYKSWA-QTVKESTKHNCKSVDKKMKEVIPSDTILANLDRRFLQEAIEKIIESNGY 126

Query: 132 -SAIQFLTSMRVLFKWAVRQEYVAINP---CLSVERPK----RKTEGIRPWTKEDMQQF- 182
            +A +    +R +F +AV+  Y+  N        ++PK     + +     T ++++   
Sbjct: 127 ITAKKVRHRLRGIFNYAVQYSYIENNEVDYTTIPQKPKTLEELEKKRNNFLTMQEIKALV 186

Query: 183 -----KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK---------- 225
                + +  + +   L       +G+R  +     ++++   NN   I           
Sbjct: 187 DVLNRREYHQKYADMVLVLTL---TGMRYGELTALQLKNIDFENNKIEITGNFDSVNKIK 243

Query: 226 --TQKTGTIITVELPDGFMKLLAMTPI----------GKETFFIN-NDKQKMNATQFSIW 272
              + T +I T+++ +  ++ +    +            +  F      Q      F   
Sbjct: 244 TLPKTTNSIRTIKVSESVIEAIQRQIVRLSERFQPLSSDDYIFCFEKWNQPTTIACFIQI 303

Query: 273 FKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
            K    +A + K  S+H  R    +  A++G     +M   G        E Y+ 
Sbjct: 304 LKKYGKQAKIEKNLSSHIFRHSHISFLAESGLPIKSIMDRVGHSNAKMTLEIYSH 358


>gi|120602532|ref|YP_966932.1| phage integrase family protein [Desulfovibrio vulgaris DP4]
 gi|120562761|gb|ABM28505.1| phage integrase family protein [Desulfovibrio vulgaris DP4]
          Length = 342

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 80/224 (35%), Gaps = 12/224 (5%)

Query: 108 DFDYRKITTKHIRSGVESRKHTPSSAIQ--FLTSMRVLFKWAVRQEYVAINPCLSVERPK 165
                 I    + + V+ +    + A +  +L  ++ +F++AV   Y   NP    ++ +
Sbjct: 101 KAPIDDIRYPDVIAFVDRQWGDRALATRQRYLGYLKAIFRFAVEHGYAKNNPLAKWKKVR 160

Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFS 223
                +R  T ED+ +     +   +  +  E+ L +    ++  R     +     I  
Sbjct: 161 EPKRDMR-LTVEDLGKIMRHAAPHLRWAIEVEWELGTRPGPTELFRIRWDDVDFAQCIVH 219

Query: 224 IKTQKTGTI-ITVELPDGFMKLLAMTPIG-KETFFINNDKQKMNATQFSIWFKAKATKAG 281
           ++  KT      + +   F   LA T       + ++   +     + +   +  A +AG
Sbjct: 220 VRGTKTHEANRVIPILPEFRDRLAATKAAMGGEYVVSYKGEP--VKRLNKALQRAAERAG 277

Query: 282 VNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETY 322
           +      + +R   A++    G+    +    G  T+    E Y
Sbjct: 278 IGYPVRMYDIRHLYASVMLANGSDLAAVSKILGHSTIATTQEHY 321


>gi|91780847|ref|YP_556054.1| putative phage integrase [Burkholderia xenovorans LB400]
 gi|91693507|gb|ABE36704.1| Putative phage integrase [Burkholderia xenovorans LB400]
          Length = 291

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/271 (13%), Positives = 83/271 (30%), Gaps = 25/271 (9%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI--TTKHIRSGVESRKHTPS 131
           L            L+  ++ ++     +  R  G           +  +  +     +P 
Sbjct: 11  LRQRMTDDMRMRQLSPKTQDTYLRIVREFARFLGRSPDTATVEDLRRYQLHLVDHGTSPV 70

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP--KRKTEGIRPWTKEDMQQFKSFWSEG 189
           S    +T ++  F+  + +      P L V     +         + +++++     +  
Sbjct: 71  SLNHAITGLKFFFEVTLDR------PDLMVRMHPVRVPRTLPVVLSPDEVRRLIE-AAGN 123

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLA- 246
            + + A      +GLR S+     V  + +   +++    K        L    ++ L  
Sbjct: 124 LKHQTALSVAYGAGLRASEVVALKVTDIDSQRMTLRIEQGKGRRDRYAMLSPVLLERLRV 183

Query: 247 ---------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSAT 295
                      P G   F   +    ++  Q +    A A  A ++K  S H +R   AT
Sbjct: 184 WWHVARAQGRMPDGGWLFPGLDPVDPLSTRQLNRAIHAAAEAAQIDKRVSMHTLRHSFAT 243

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGA 326
              +       +    G   ++    Y + A
Sbjct: 244 HLLEQKVDIRVIQVLLGHAKLENTALYVQVA 274


>gi|241992502|gb|ACS73585.1| IntI [uncultured bacterium]
          Length = 307

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 43/304 (14%), Positives = 88/304 (28%), Gaps = 58/304 (19%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT---- 129
           L+ + R        ++ +  ++  +  + I   G    +++    +   +          
Sbjct: 8   LLDQVRDQLRVKHYSIRTEQAYVDWIKRFILFHGKRHPQEMGAPELEVFLTDLAVRGGVS 67

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            S+  Q L+++  L++  ++ +   ++   +V R KR        T  +++        G
Sbjct: 68  ASTQNQALSAVLFLYREVLKIDLPWLD---NVIRAKRPQRLPVVLTPVEVRAVLERMD-G 123

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGT---------------- 231
               L    L  +G+R  +  R  V+ +    N   I+  K G                 
Sbjct: 124 VYA-LMGRLLYGTGMRLMECVRLRVKDVDFGRNEILIRDGKGGKDRVTMLPSTVAATLAD 182

Query: 232 ----------------IITVELPDGFMKLLAMTPI--GKETFFINN-----------DKQ 262
                              V LPD   K           +  F +             + 
Sbjct: 183 HLQRRRVIFEDDLAAGKAEVWLPDALAKKYPGAGTEWAWQYVFCSGSYSTDPRSGRVRRH 242

Query: 263 KMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
            ++        K   T A + K  + H +R   AT   + G     +    G   V    
Sbjct: 243 HIDEKLLQRAMKKAVTAARLTKPATPHTLRHSFATHLLEGGYDIRTVQELLGHSDVSTTM 302

Query: 321 TYTK 324
            YT 
Sbjct: 303 IYTH 306


>gi|297565034|ref|YP_003684006.1| integrase family protein [Meiothermus silvanus DSM 9946]
 gi|296849483|gb|ADH62498.1| integrase family protein [Meiothermus silvanus DSM 9946]
          Length = 251

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 61/179 (34%), Gaps = 12/179 (6%)

Query: 159 LSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL----YSGLRCSDSCRAGV 214
           L +  P ++   +   + E + +        S  +  +  +L    Y+G R S+      
Sbjct: 57  LELTPPPKRRRVVERLSPEAVSRLLEAAYRLSPRKPVYGLMLKTLFYTGCRVSEFVFLRA 116

Query: 215 QHLQNNI----FSIKTQKTGTIITVELPDGFMKLLAM--TPIGKETFFINNDKQKMNATQ 268
           Q    +       +   K G++  V +     + L +      +   F +N  Q+ +   
Sbjct: 117 QDAYLDGEAPHLYVHRAKKGSVRYVPILPALAQELRVHLAGRTRGYLFESNRHQRYSPRA 176

Query: 269 FSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
                +  A +AG+ K    H +R   A I  D G    +L    G +     + Y + 
Sbjct: 177 IQKLIQQAAAEAGIEKRVYPHLLRHSVAQILLDRGMPLEQLQKFLGHQDPKTTQIYAES 235


>gi|160937668|ref|ZP_02085028.1| hypothetical protein CLOBOL_02558 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439313|gb|EDP17065.1| hypothetical protein CLOBOL_02558 [Clostridium bolteae ATCC
           BAA-613]
          Length = 401

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 50/378 (13%), Positives = 111/378 (29%), Gaps = 67/378 (17%)

Query: 13  KERTRHGKIIYYFR--KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
           + R R     + F   K +G+R  + +    T   A  +                    +
Sbjct: 5   RTRKRGSTWEWSFEGAKINGKRNPISHGGYRTKAEAITAGTQAKAEYDSAGRRFTPSDIS 64

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH- 128
           +   +  +  +    +L+ N++  +E      +    G +    + T  I+  ++  K  
Sbjct: 65  VSDYLDYWYDNYVKTNLSYNTQKDYEKKIRVHLKPAFGKYRLASLETDVIQKWIDGMKRQ 124

Query: 129 --TPSSAIQFLTSMRVLFKWAV-RQEYVAINPCLSVERPK-RKTEGIRPWTK-----EDM 179
             + S     L+ +     +AV   +Y+  NPC     PK   ++  +  T+     ED 
Sbjct: 125 GYSRSMVKNTLSCLSGALGYAVYPCKYIKYNPCDYARIPKIVMSDEAKAHTEYICVKEDF 184

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----------------QNNIFS 223
                 +   S   +      + G R  ++    + H                 +   + 
Sbjct: 185 AAIIERFGPDSNFYVPLMTGYHCGTRLGEAYGIDLLHDVDFERHTITIQHQLTNEGGKWY 244

Query: 224 IKTQKTGTIITVELPDGFMKLLAMTP-------------------IGKETFF-------- 256
            +  K  ++ T+++   + K+L                       +     F        
Sbjct: 245 YRPPKYDSVRTIKILPEYEKILKTEIHNRKKNMLRYGQYFTKTYQMDDGLIFQAPSNVKI 304

Query: 257 ---------INNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHE 306
                       + + +    F    K    + G     +H +R    T+ A+ GA    
Sbjct: 305 VGKEIMPISAKENGELLTPYSFKYCAKVIHEELGNPLFHSHCLRHTHGTLLAENGAQPKT 364

Query: 307 LMATYGWKTVDQA-ETYT 323
           +M   G K +    + Y 
Sbjct: 365 VMERLGHKDIKTTMDRYV 382


>gi|120602210|ref|YP_966610.1| phage integrase family protein [Desulfovibrio vulgaris DP4]
 gi|120562439|gb|ABM28183.1| phage integrase family protein [Desulfovibrio vulgaris DP4]
          Length = 472

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 54/149 (36%), Gaps = 11/149 (7%)

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-ELPDGFMKLL 245
           +   +     E L  SGLR S++    V     +   ++    G+   +  L D     L
Sbjct: 255 AIRRRDLALAELLYGSGLRISEALGLDVLDADPSAGVVRVLGKGSKERMSPLSDTSADAL 314

Query: 246 A--------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSAT 295
                    +   G+   F+     +++  Q +    A   +AG+ +S   HG+R   AT
Sbjct: 315 REWLHFRHHLASEGERALFVGARGGRLDRRQATRIIDALCRRAGLPQSVSPHGLRHSFAT 374

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTK 324
              +AGA    +    G   +   + YT 
Sbjct: 375 HLLEAGADLRSVQELLGHARLATTQRYTH 403



 Score = 39.6 bits (91), Expect = 0.65,   Method: Composition-based stats.
 Identities = 15/108 (13%), Positives = 41/108 (37%), Gaps = 8/108 (7%)

Query: 85  GSLAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIR---SGVESRKHTPSSAIQF 136
              +  +  ++ +   Q          G      +T +H++   + +   +   SS  + 
Sbjct: 57  KGYSPATVTAYGTDLMQFHGVLTAEGFGLDAPENVTRRHVQRYLAELHRLRTARSSVARK 116

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
           L+++R  F++ +R   V  +P  +V  P+++    R    + +     
Sbjct: 117 LSALRAFFRYMLRLRRVTADPVAAVHNPRQEKRQPRTLNVDQVFALLD 164


>gi|302035314|ref|YP_003799985.1| class 3 integrase Int3 [Escherichia coli]
 gi|28207197|gb|AAO32355.1| IntI3 integrase [Klebsiella pneumoniae]
 gi|262234436|gb|ACY39221.1| Int3 [Escherichia coli]
          Length = 346

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 47/316 (14%), Positives = 98/316 (31%), Gaps = 66/316 (20%)

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSG 122
           P ++K L+ + R+   +    + +  ++  +             G    R++    +   
Sbjct: 15  PRSIK-LLDQVRERVRYLHYILQTEKAYVYWAKAFVLWTARSHGGFRHPREMGQAEVEGF 73

Query: 123 VE----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINP-CLSVERPKRKTEGIRPWTKE 177
           +      ++  P++  Q L ++  L++  +  E     P    + RP  +       T +
Sbjct: 74  LTMLATEKQVAPATHRQALNALLFLYRQVLGMEL----PWMQQIGRPPERKRIPVVLTVQ 129

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITV 235
           ++Q   S    G++  LA   L  SGLR  ++    V+ +    +   +++ K      V
Sbjct: 130 EVQTLLS-HMAGTEALLA-ALLYGSGLRLREALGLRVKDVDFDRHAIIVRSGKGDKDRVV 187

Query: 236 ELPDGFMKLLAMT------------PIGKETFFI-------------------------- 257
            LP   +  L                 G+   ++                          
Sbjct: 188 MLPRALVPRLRAQLIQVRAVWGQDRATGRGGVYLPHALERKYPRAGESWAWFWVFPSAKL 247

Query: 258 -------NNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELM 308
                     +  +   + +   K    +AG+ K  S H +R   AT    AG     + 
Sbjct: 248 SVDPQTGVERRHHLFEERLNRQLKKAVVQAGIAKHVSVHTLRHSFATHLLQAGTDIRTVQ 307

Query: 309 ATYGWKTVDQAETYTK 324
              G   V     YT 
Sbjct: 308 ELLGHSDVSTTMIYTH 323


>gi|39937142|ref|NP_949418.1| phage-like integrase [Rhodopseudomonas palustris CGA009]
 gi|39651000|emb|CAE29523.1| possible phage-like integrase [Rhodopseudomonas palustris CGA009]
          Length = 408

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 60/345 (17%), Positives = 106/345 (30%), Gaps = 42/345 (12%)

Query: 8   PPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK 67
           P +V K R  HG+  ++    HG       P            L G     +     R +
Sbjct: 41  PVYVLKYR-AHGRQRFFTIGPHGS------PWTPERARREAKRLLGLVADGKDPADDRAE 93

Query: 68  PT-----TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122
                  TL  +  +Y K A        +    E Y     +         I  +H+   
Sbjct: 94  AALQAADTLLKIADQYLKHAK-QKQRPRTYSEIERYLLTAWKPLHPVSVFLIKRRHVAIR 152

Query: 123 VESRKHTPSS--AIQFLTSMRVLFKWAVRQEY-VAINPCLSVERPKRKTEGIRPWTKEDM 179
           +        +  A +   ++  +F WA+R+   +  NP L   RP       R     ++
Sbjct: 153 IAEIATGQGAVTAARARAALSAMFNWAIREGLDIPANPVLGTNRPAAPRSRDRVLADGEL 212

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIITV 235
            +  +   +    R   + LL +  R  +        L       K      K      V
Sbjct: 213 AEIWAALGDDDYGR-IVKLLLLTAQRREEVGSMRRTELDLENSVWKIPGNRTKNHREHKV 271

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQ--------------KMNATQFSIWFKAKATKAG 281
            L    + L+ +    +E  F +  ++              K       +  + KA  AG
Sbjct: 272 PLTKAAIALIPLPRGNREYVFGDGPRREGDNHRGYSGWSKSKAGLDARLLAVRQKALDAG 331

Query: 282 V------NKSAHGVRKFSATISADA-GATAHELMATYGWKTVDQA 319
           V      +   H +R+ +AT+ AD  G   H + A     +  +A
Sbjct: 332 VAAEPLPDWHLHDLRRTAATVMADRLGVFPHIVEAVLNHVSGHRA 376


>gi|17547208|ref|NP_520610.1| putative integrase protein [Ralstonia solanacearum GMI1000]
 gi|17429510|emb|CAD16196.1| putative integrase protein [Ralstonia solanacearum GMI1000]
          Length = 417

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 51/262 (19%), Positives = 94/262 (35%), Gaps = 22/262 (8%)

Query: 89  VNSRISFESYFDQII-RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWA 147
              R    S  D+ +    G      +   H+ + VE  + TP++A      ++  + +A
Sbjct: 127 EGYRKQIRSRLDRFVWPAIGRKALDDVKPAHVLAIVEGLRATPNTAEGVRVIVQQCYDYA 186

Query: 148 VRQEYVAINPCLSVERPKR--KTEGIRPWTKEDMQQF-KSFWSEGSQPR--LAFEFLLYS 202
           +++  V  NP   +       K E  R  ++ D+  F ++   +G+ P    A   L+YS
Sbjct: 187 IQKLLVESNPARPLRGVITVPKAEHHRHLSESDLGAFWRALGKQGAHPSTTAAVYLLVYS 246

Query: 203 GLRCSDSCRAGVQHLQNNIFSI----KTQKTGTIITVELPDGFMKLL---AMTPIGKETF 255
             R ++  RA       +        +  K+     V L    +++L        G E  
Sbjct: 247 MCRKNEVLRAKWSEFDFDKAQWDIPAERMKSRRPHRVYLSRQALEVLEVQRAVSGGYEYV 306

Query: 256 F--INNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYG 312
           F   +     +     +  FK      GV + S HG R  +AT+  + G +   +     
Sbjct: 307 FPSPSIPTLPLADATLNHLFKR--LDFGVPEFSPHGTRGTAATLLREHGFSRDVVELLLA 364

Query: 313 WKTVD-QAETYTK---GADRIR 330
                  A +Y      A+R R
Sbjct: 365 HTERSQTAASYHHHELEAERRR 386


>gi|116749674|ref|YP_846361.1| phage integrase family protein [Syntrophobacter fumaroxidans MPOB]
 gi|116698738|gb|ABK17926.1| phage integrase family protein [Syntrophobacter fumaroxidans MPOB]
          Length = 348

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 51/322 (15%), Positives = 101/322 (31%), Gaps = 24/322 (7%)

Query: 17  RHGKIIYY-FRKGHGRRIRLPYPHES-----TFIPAYMSALTGSTPKREYINSPRKKPTT 70
           R G++ +   +     RIR             F  A    LTG          P +   +
Sbjct: 5   RRGEVYWVDVKVKGHPRIRKSAATSERLKALDFEAALRRTLTGVVSHE-----PIRGEMS 59

Query: 71  LKWLISEYRKSAHWGSLAVNSRISF--ESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128
           L   ++   K  HW        + F   S  +++       D  +   + +   ++S  +
Sbjct: 60  LSEAMARAFK-VHWNHKKSAKTVGFHARSLLEKLGNDIRLKDIGENEVRGLVRQLQSDGN 118

Query: 129 TPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           + ++    L+ ++ L +        +   P    +R K K   +R  + E+  +  +   
Sbjct: 119 SAATINSKLSVLQTLLRMSCNEWRVIDRVP--RFDRLKEKEGRLRTLSPEEESRLLALLR 176

Query: 188 EGSQPRLA--FEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMK 243
              +   A  +  LL +G   S+      + +        I  +     I          
Sbjct: 177 RTGRHDAADLYMVLLDTGASLSEVLSLKWKGVDLVGGKIGIDVESGRNRILPMTRRVRSM 236

Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGA 302
           L+    +G ++ F N   Q+        W + +    G      H +R   A  +   G 
Sbjct: 237 LMQRMGMGIKSPFSNVTYQQAEYN--WKWVRKQMGLGGDPGFVIHSLRHTFAARTVQRGI 294

Query: 303 TAHELMATYGWKTVDQAETYTK 324
               L A  G  T+   E Y +
Sbjct: 295 GLPALKALLGHSTIRLTERYAR 316


>gi|320637249|gb|EFX07075.1| putative integrase for prophage CP-933R [Escherichia coli O157:H7
           str. G5101]
          Length = 411

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 42/278 (15%), Positives = 89/278 (32%), Gaps = 49/278 (17%)

Query: 89  VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAV 148
            ++ IS+  Y D +  ++       +   + RS    +  T  +   ++  +  L ++A 
Sbjct: 119 ESTPISYIRYSDILNYRNELLHGETLYLDNPRS--NKKGRTVRTVDNYIALLCSLLRFAY 176

Query: 149 RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD 208
           +  +++  P   V++ +R      P +K +         +G    L  +F +YSGLR  +
Sbjct: 177 QSGFISTKPFEGVKKLQRNRIKPDPLSKTEFNALMES-EKGQSQNLW-KFAVYSGLRHGE 234

Query: 209 SCRAGVQHLQNNIFSIKTQKTGTIITVELPDG----------FMKLLAMTP-----IGKE 253
                 + +     ++  ++  TI+ +  P                L          G  
Sbjct: 235 LAALAWEDVDFEKGTVNVRRNLTILDMFGPPKTNAGIRTVTLLQPALEALKEQYKLTGHH 294

Query: 254 -----TFFINNDKQK---------------------MNATQFSIWFKAKATKAGVNKS-- 285
                TF+     +                       + +     + A   +AG+ +   
Sbjct: 295 RKSEITFYHREYGRTEKQKLHFVFMPRVCNGKQKPYYSVSSLGARWNAAVKRAGIRRRNP 354

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETY 322
            H  R   A     AGA    + +  G +T     E Y
Sbjct: 355 YHT-RHTFACWLLTAGANPAFIASQMGHETAQMVYEIY 391


>gi|309776171|ref|ZP_07671162.1| putative phage integrase [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916122|gb|EFP61871.1| putative phage integrase [Erysipelotrichaceae bacterium 3_1_53]
          Length = 388

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 50/371 (13%), Positives = 97/371 (26%), Gaps = 71/371 (19%)

Query: 18  HGKIIYYFRKGH--GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75
            G   Y  R     G+ + L            + A         +   P       KWL+
Sbjct: 2   KGIQYYRTRITDADGKELSLYAATCEELYEKQLEARKQVEEIIFHRQHPTVAEYGEKWLL 61

Query: 76  SEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
            +   SA    ++ ++   +     + II+  G+    ++T   IR  +           
Sbjct: 62  MQ---SAK---VSASTLRGYTRDMTNYIIKPLGEMYMEEVTADDIRLALVPLSKKSEGLY 115

Query: 135 QFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGI-RPWTKEDMQQFKSFWSEGSQP 192
             +  +     +A  + + +  NPC  +     K        T + +         G  P
Sbjct: 116 NKVNMLLKCIFYAAERNQILEHNPCAGISGKGGKPTKKKEALTDQQVAVLLDTVK-GLPP 174

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQ--------------KTG-TII 233
            L     LYSGLR  +        +         S++                KT     
Sbjct: 175 YLFIMLGLYSGLRREEILALQWDCVFLDEDTPYLSVRRAWRTEHNRPVISTVLKTPAAKR 234

Query: 234 TVELPDGFMKLLAMTPIG--KETFFINNDKQKMNATQFSIWFK----------------- 274
            + +P   +  L  T      +    ++  + + A+QF   ++                 
Sbjct: 235 DIPIPKCLVDCLRETKENSISDYVIADSKGEPLAASQFQRVWQYVVVRSTKPRNYYKYVN 294

Query: 275 --------------------AKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWK 314
                                       + + H +R    T    AG     +    G +
Sbjct: 295 GQSIKYTVTPTLGMTQKNQPKIRYTLDFDVTPHQLRHTYITNLLYAGVDPKTVQYLAGHE 354

Query: 315 TVDQA-ETYTK 324
                 + Y K
Sbjct: 355 NSKTTMDIYAK 365


>gi|210621315|ref|ZP_03292585.1| hypothetical protein CLOHIR_00528 [Clostridium hiranonis DSM 13275]
 gi|210154825|gb|EEA85831.1| hypothetical protein CLOHIR_00528 [Clostridium hiranonis DSM 13275]
          Length = 320

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/229 (13%), Positives = 69/229 (30%), Gaps = 36/229 (15%)

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLS---VERPKRKTEGIRPWTKEDMQQFKSFWS 187
            +  +  +S+  LFK+  R E +  N       ++ PK + + I+    +++        
Sbjct: 86  RALARKKSSLSTLFKFLYRNEQLKENITDGFNPIKLPKPQPDAIKRLEIDEVAVMLDAVE 145

Query: 188 EG---------------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGT 231
            G                + +      +  GLR ++     +     +       +K G 
Sbjct: 146 TGEGLTEKEKVYWKKTKLRDKAILALFVTYGLRLNELRELNISSFNFSRGEFTIFRKRGK 205

Query: 232 IITVELPD------------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK--- 276
            + + +                     +    ++  F++  K++M     +   K     
Sbjct: 206 EVLMPINKTCEHVVLDYINHERPHSEDIPEEHRDALFLSLQKKRMTERAITSLVKKYTSI 265

Query: 277 --ATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
              T      S H +R  +AT     G T +++        V   + Y 
Sbjct: 266 SMCTTRDKGYSPHKLRATAATSLIQNGFTIYDVQNLLDHDNVTTTQLYA 314


>gi|148990176|ref|ZP_01821407.1| prophage LambdaSa1, site-specific recombinase, phage integrase
           family protein [Streptococcus pneumoniae SP6-BS73]
 gi|148993411|ref|ZP_01822928.1| prophage LambdaSa1, site-specific recombinase, phage integrase
           family protein [Streptococcus pneumoniae SP9-BS68]
 gi|168488714|ref|ZP_02712913.1| integrase [Streptococcus pneumoniae SP195]
 gi|147924443|gb|EDK75532.1| prophage LambdaSa1, site-specific recombinase, phage integrase
           family protein [Streptococcus pneumoniae SP6-BS73]
 gi|147927966|gb|EDK78986.1| prophage LambdaSa1, site-specific recombinase, phage integrase
           family protein [Streptococcus pneumoniae SP9-BS68]
 gi|183572844|gb|EDT93372.1| integrase [Streptococcus pneumoniae SP195]
          Length = 375

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/321 (12%), Positives = 113/321 (35%), Gaps = 48/321 (14%)

Query: 48  MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG 107
            +A+       + +++ + +  T + + + + KS    ++  +++ + +S   ++     
Sbjct: 42  QAAILLQEKINKKLSTKQVESITFEEIYNLFYKSWA-QTVKESTKHNCKSVDKKMKEVIP 100

Query: 108 -DFDYRKITTKHIRSGVESRKHTPS--SAIQFLTSMRVLFKWAVRQEYVAINP---CLSV 161
            D     +  + ++  +E    +    +A +    +R +F +AV+  Y+  N        
Sbjct: 101 SDTILANLDRRFLQEAIEKIIESNGYITAKKVRHRLRGIFNYAVQYSYIENNEVDYTTIP 160

Query: 162 ERPK----RKTEGIRPWTKEDMQQF------KSFWSEGSQPRLAFEFLLYSGLRCSDSCR 211
           ++PK     + +     T ++++        + +  + +   L       +G+R  +   
Sbjct: 161 QKPKTLEELEKKRNNFLTMQEIKALVDVLNRREYHQKYADMVLVLTL---TGMRYGELTA 217

Query: 212 AGVQHLQ--NNIFSIK------------TQKTGTIITVELPDGFMKLLAMTPI------- 250
             ++++   NN   I              + T +I T+++ +  ++ +    +       
Sbjct: 218 LQLKNIDFENNKIEITGNFDSVNKIKTLPKTTNSIRTIKVSESVIEAIQRQIVRLSERFQ 277

Query: 251 ---GKETFFIN-NDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATA 304
                +  F      Q      F    K    +A + K  S+H  R    +  A++G   
Sbjct: 278 PLSSDDYIFCFEKWNQPTTIACFIQILKKYGKQAKIEKNLSSHIFRHSHISFLAESGLPI 337

Query: 305 HELMATYGWKTVDQA-ETYTK 324
             +M   G        E Y+ 
Sbjct: 338 KSIMDRVGHSNAKMTLEIYSH 358


>gi|221232324|ref|YP_002511477.1| phage integrase [Streptococcus pneumoniae ATCC 700669]
 gi|8953580|emb|CAB96616.1| integrase [Streptococcus phage MM1]
 gi|73747016|gb|AAZ82412.1| integrase [Streptococcus phage MM1 1998]
 gi|220674785|emb|CAR69358.1| phage integrase [Streptococcus pneumoniae ATCC 700669]
          Length = 375

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/321 (12%), Positives = 113/321 (35%), Gaps = 48/321 (14%)

Query: 48  MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG 107
            +A+       + +++ + +  T + + + + KS    ++  +++ + +S   ++     
Sbjct: 42  QAAILLQEKINKKLSTKQVESITFEEIYNLFYKSWA-QTVKESTKHNCKSVDKKMKEVIP 100

Query: 108 -DFDYRKITTKHIRSGVESRKHTPS--SAIQFLTSMRVLFKWAVRQEYVAINP---CLSV 161
            D     +  + ++  +E    +    +A +    +R +F +AV+  Y+  N        
Sbjct: 101 SDTILANLDRRFLQEAIEKIIESNGYITAKKVRHRLRGIFNYAVQYSYIENNEVDYTTIP 160

Query: 162 ERPK----RKTEGIRPWTKEDMQQF------KSFWSEGSQPRLAFEFLLYSGLRCSDSCR 211
           ++PK     + +     T ++++        + +  + +   L       +G+R  +   
Sbjct: 161 QKPKTLEELEKKRNNFLTMQEIKALVDVLNRREYHQKYADMVLVLTL---TGMRYGELTA 217

Query: 212 AGVQHLQ--NNIFSIK------------TQKTGTIITVELPDGFMKLLAMTPI------- 250
             ++++   NN   I              + T +I T+++ +  ++ +    +       
Sbjct: 218 LQLKNIDFENNKIEITGNFDSVNKIKTLPKTTNSIRTIKVSESVIEAIQRQIVRLSERFQ 277

Query: 251 ---GKETFFIN-NDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATA 304
                +  F      Q      F    K    +A + K  S+H  R    +  A++G   
Sbjct: 278 PLSSDDYIFCFEKWNQPTTIACFIQILKKYGKQAKIEKNLSSHIFRHSHISFLAESGLPI 337

Query: 305 HELMATYGWKTVDQA-ETYTK 324
             +M   G        E Y+ 
Sbjct: 338 KSIMDRVGHSNAKMTLEIYSH 358


>gi|331017167|gb|EGH97223.1| prophage PSPPH06, site-specific recombinase phage integrase family
           protein [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 382

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 42/299 (14%), Positives = 92/299 (30%), Gaps = 48/299 (16%)

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISF---ESYF----DQIIRKSGDFDYRKITTKHIRS 121
            TL+++ +++ +S  +  L++ +   +            ++ +  GD   +K T   I+ 
Sbjct: 75  GTLRYVCAQFHQSDRYKKLSLKTHDDYCYSRDVLLGIPTRLGKPLGDLLVKKFTAALIQR 134

Query: 122 GVESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP---KRKTEGIRPWTK 176
            V+      TPS A   L  +R + +W   + Y+  NP   +E P   KR+        +
Sbjct: 135 IVDRLADEGTPSKAAHVLRYLRRVLQWGRNRGYLDNNPAQGIEAPVERKRRRLPEHLIME 194

Query: 177 EDMQQFKSF------WSEGSQPRLAF--EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
             + +  +F         G    L++  E      LR  ++      H   +      +K
Sbjct: 195 ALVDRALAFGRLARNEKGGCPEYLSYVMEIGYLCRLRGIETITLTDAHELADGVMTNRRK 254

Query: 229 TGTIITVELPDGFMKLLAMTPI-----------------GKETFFINNDKQKMNATQFSI 271
                 V                                 +    + +    +  +    
Sbjct: 255 GSRDNIVRWTPRLRAAWEGAKAYRAKVWASKSTVIPIRPDRRYIIVASHGGPLRKSSLDT 314

Query: 272 WFKAKATKAGVNKSA--------HGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
            ++   T A  + +         H +++   T +A   A   E     G +     + Y
Sbjct: 315 AWQRFITSAIEDGTITAEQRFGLHDLKRRGITDTAGNRADKQE---ASGHRDGAMMDVY 370


>gi|295094710|emb|CBK83801.1| Site-specific recombinase XerD [Coprococcus sp. ART55/1]
          Length = 394

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/278 (13%), Positives = 85/278 (30%), Gaps = 55/278 (19%)

Query: 90  NSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVR 149
           ++R S+ +++ +I ++ G      +    +++ +       ++          + + A+ 
Sbjct: 101 STRESYATHYKRIQKELGWRKLTSLNLIIMQNALNELVSD-NARKNTKKIPVDMLEKAID 159

Query: 150 QEYVAINPCLSVERP--KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCS 207
            + +  N    +     K   +  R  T  + + F           L F   + +G+R  
Sbjct: 160 SDLLTKNVAKQLNTVISKEDKKERRVLTVSEAELFLGEAQSSFYYNL-FVLAIETGMRIG 218

Query: 208 DSCRAGVQHLQNN-------------------IFSIKTQKTGT-IITVELPDGFMKLLAM 247
           + C    + +  +                   IF +   KT     T+ L    ++ L  
Sbjct: 219 ELCGVQWKDIDFDKKVLYVRHTLCYFQKDGKYIFEMHDAKTKNGRRTIPLTTRALEALKR 278

Query: 248 TPIGK---------------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK-------- 284
             I K               +  F+  + +         +   +A  A VN+        
Sbjct: 279 QRIQKQKILFKGIETEEQYRDLVFVTKNNRPT-----QQFIVQEAIGAIVNRIRKEHPDY 333

Query: 285 ---SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
              S H +R   AT + + G     L    G  ++   
Sbjct: 334 EMFSPHCLRHTFATRAIENGMQPKTLQKILGHGSLQMT 371


>gi|291539830|emb|CBL12941.1| Site-specific recombinase XerD [Roseburia intestinalis XB6B4]
          Length = 266

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 42/236 (17%), Positives = 77/236 (32%), Gaps = 43/236 (18%)

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYV--AINPCLSVERP-KRKTEGIRPWTKEDMQQFKSF 185
              +       +R L   AVR+  +    NP   V+ P     +  R +T+E   QF  +
Sbjct: 2   KQGTVNNVRKMLRTLLNEAVRRGMLSADDNPYPKVKAPSNLPVKQQRSFTEEQRDQFLQY 61

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----------------NNIFSIKTQKT 229
             +     L ++ LLY+G+R  ++    +  +                   +F I+T KT
Sbjct: 62  AGKSLYANL-YKLLLYTGMRVGEALALMICDVNWDNHVLHVTKNLQKTTQGVFYIETPKT 120

Query: 230 GTII-TVELPDGFMKLLAMT---------PIGKE-------TFFINNDKQKMNATQFS-- 270
              I  + L     + +            PI ++         F+N   + +N       
Sbjct: 121 RESIRDIYLVPEAEEAIKSQLELRKIIVEPIQEDIKGEFENLLFVNTKGKPVNVGSVRQS 180

Query: 271 -IWFKAKATKAGVNKS---AHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
                 K    G N      H +R    +I+   G     + A  G  +++    Y
Sbjct: 181 INRIVEKIRADGNNCPDIWIHAMRHGYVSIAVARGVPLEVVQANVGHTSIETTMRY 236


>gi|321157036|emb|CBW39024.1| Integrase [Streptococcus phage 040922]
          Length = 375

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 43/322 (13%), Positives = 117/322 (36%), Gaps = 50/322 (15%)

Query: 48  MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS- 106
            +A+       + +++ + +  T + + + + KS    ++  +++ + +S  D+I+++  
Sbjct: 42  QAAILLQEKINKKLSTKQVESITFEEIYNLFYKSWS-QTVKESTKHNCKS-IDKIMKQVI 99

Query: 107 -GDFDYRKITTKHIRSGVESRKHTPS--SAIQFLTSMRVLFKWAVRQEYVAINP---CLS 160
             D     +  + ++  +E    +    +A +    +R +F +AV+  Y+  N       
Sbjct: 100 PSDTLLANLDRRFLQEAIEKIIESNGYITAKKVRHRLRGIFNYAVQYSYIENNEVDYTTI 159

Query: 161 VERPK----RKTEGIRPWTKEDMQQF------KSFWSEGSQPRLAFEFLLYSGLRCSDSC 210
            ++PK     + +     T ++++        + +  + +   L       +G+R  +  
Sbjct: 160 PQKPKTLEELEKKRNNFLTMQEIKALVDVLNRREYHQKYADMVLVLAL---TGMRYGELT 216

Query: 211 RAGVQHLQ--NNIFSIK------------TQKTGTIITVELPDGFMKLLAMTPI------ 250
              ++++   NN   I              + T +I T+++ +  ++ +    +      
Sbjct: 217 ALQLKNIDLENNKIEITGNFDSVNKIKTLPKTTNSIRTIKVSESVIEAIQRQIVRLSERF 276

Query: 251 ----GKETFFIN-NDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGAT 303
                 +  F      Q      F    K    +A + K  S+H  R    +  A++G  
Sbjct: 277 QPLSSDDYIFCFEKWNQPTTIACFIQILKKYGKQAKIEKNLSSHIFRHSHISFLAESGLP 336

Query: 304 AHELMATYGWKTVDQA-ETYTK 324
              +M   G        E Y+ 
Sbjct: 337 IKSIMDRVGHSNAKMTLEIYSH 358


>gi|270158947|ref|ZP_06187603.1| phage integrase family protein [Legionella longbeachae D-4968]
 gi|289166278|ref|YP_003456416.1| phage integrase [Legionella longbeachae NSW150]
 gi|269987286|gb|EEZ93541.1| phage integrase family protein [Legionella longbeachae D-4968]
 gi|288859451|emb|CBJ13391.1| putative phage integrase [Legionella longbeachae NSW150]
          Length = 409

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 47/305 (15%), Positives = 105/305 (34%), Gaps = 30/305 (9%)

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121
            + +    TL+ ++++Y K      L   +   ++    +++    D     IT + I  
Sbjct: 97  KTKKVHAMTLQQVLNDYLK--ARKDLKPRTLNDYQCVLHEVVPDWLDKPLVNITREMIAK 154

Query: 122 GVES--RKHTPSSAIQFLTSMRVLFKWAV-------RQEYVAINPCL---------SVER 163
                 + ++ + A   +  +R +F +A+           + INP            V+R
Sbjct: 155 RHTKHGQANSKARANNAMRVLRAIFNYAMYEYQDGNGHPIITINPVKYLSHTRAWYRVDR 214

Query: 164 PKRKTEGIRP--WTKEDMQQFKS-FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-- 218
            +   +  +   W K  +   ++  +         F  LL++G+R  ++     + +   
Sbjct: 215 KQTVIKPHQLADWYKAVIVLVETDNYRNALLWHDYFLLLLFTGMRKMEAASLRWEDIDLK 274

Query: 219 NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET--FFINNDKQKMNATQFSIWFKAK 276
           +   +++  K   I T+ + D   +L+      K +   F    K               
Sbjct: 275 SKTITLQDTKNHEIHTLPMSDFVYELMEHRSRNKTSEFVFPAESKTGYIYEP-KKAVNRV 333

Query: 277 ATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWK--TVDQAETYTKGADRIRLGIK 334
              +GV  + H +R+  ATI+      A+ L      K      A    K  +R+R  ++
Sbjct: 334 VELSGVLFTLHDLRRTFATIADSLDLPAYALKRLLNHKMNNDVTAGYIMKDVERLRKPMQ 393

Query: 335 NSRRI 339
                
Sbjct: 394 QVANF 398


>gi|296136333|ref|YP_003643575.1| integrase family protein [Thiomonas intermedia K12]
 gi|295796455|gb|ADG31245.1| integrase family protein [Thiomonas intermedia K12]
          Length = 340

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 44/332 (13%), Positives = 96/332 (28%), Gaps = 36/332 (10%)

Query: 16  TRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75
            R G      R+     +   +        A+         + ++++    K  T    +
Sbjct: 6   KRAGAWRALIRRKGYPALSATF-DTKAEAEAWARKTESEIDRGQHVDHRPAKAVTFSDCL 64

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSA 133
             Y  +         +          +           +         + R    +P+S 
Sbjct: 65  RRY--AVEVSEQKKGADAERSRIVFLLEHPLSKRAIGDLRPVDFARHRDERLAAVSPASV 122

Query: 134 IQFLTSMRVLFKWAVRQEY---VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
              L  +  LF  A+ +E+   ++ NP   + +PK +    R    ++ ++  +      
Sbjct: 123 RLELALISHLFSVAI-REWGLGLSSNPIQQISKPKVQNARDRRLAGDEEERLFAAIDAIC 181

Query: 191 QPRLAFE----------------FLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTI 232
             R                      L + +R  +   A   +L  N     +   K GT 
Sbjct: 182 AIRTPRANRAAVHPAMWFKQIVILALETAMRQGELLEATWDNLHANERYLFLPDTKNGTA 241

Query: 233 ITVEL-PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVR 290
            +V L       +L++        F       ++A     +++     A + +   H +R
Sbjct: 242 RSVPLSHIALDAILSVERTDDTRIF------PVSAFAVKNYWEKALRLAAIEDFHFHDLR 295

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETY 322
             + +  A      H+LM   G K+      Y
Sbjct: 296 HEATSRLARK-LPMHDLMKVTGHKSSAMLARY 326


>gi|255598106|ref|XP_002536930.1| Shufflon-specific DNA recombinase, putative [Ricinus communis]
 gi|223518080|gb|EEF25453.1| Shufflon-specific DNA recombinase, putative [Ricinus communis]
          Length = 407

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/245 (16%), Positives = 82/245 (33%), Gaps = 15/245 (6%)

Query: 92  RISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT---PSSAIQFLTSMRVLFKWAV 148
           + +  +  D++ ++       +IT + +++ +++       P++       +R  F  A 
Sbjct: 104 QDAQRAEADRVRKRLSATPVAEITMRQMQALMDAMVDAGVAPATIQLERALLRHFFNHAR 163

Query: 149 RQ-EYV--AINPC-LSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL--AFEFLLYS 202
           +Q ++     NP    +  P    +  +  T+ D ++      +   P        LL S
Sbjct: 164 KQWQWTRPHQNPAGEGLTLPTVDNKRDQVLTQRDWERLHVHLKDYCNPYAYPLVMLLLES 223

Query: 203 GLRCSD-SCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN 259
            +R  +         +    NI  +   K G    V L    +++L       E     +
Sbjct: 224 AMRIGEPLVHTSWGDVDWERNILRLGDAKAGQR-NVPLSPHAVRILRGLQAQDEASKPAD 282

Query: 260 DKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISA-DAGATAHELMATYGWKTVD 317
              K         +     KAG+ +   H +R  SAT  A +       L    G KT  
Sbjct: 283 RIFKTTYEAIKKAWADSCKKAGISDIRLHDLRHTSATRYAIEFNGNQPYLKVITGHKTDV 342

Query: 318 QAETY 322
               Y
Sbjct: 343 MLNRY 347


>gi|149012704|ref|ZP_01833680.1| prophage LambdaSa1, site-specific recombinase, phage integrase
           family protein [Streptococcus pneumoniae SP19-BS75]
 gi|147763304|gb|EDK70242.1| prophage LambdaSa1, site-specific recombinase, phage integrase
           family protein [Streptococcus pneumoniae SP19-BS75]
          Length = 375

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 43/322 (13%), Positives = 117/322 (36%), Gaps = 50/322 (15%)

Query: 48  MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS- 106
            +A+       + +++ + +  T + + + + KS    ++  +++ + +S  D+I+++  
Sbjct: 42  QAAILLQEKINKKLSTKQVESITFEEIYNLFYKSWS-QTVKESTKHNCKS-IDKIMKQVI 99

Query: 107 -GDFDYRKITTKHIRSGVESRKHTPS--SAIQFLTSMRVLFKWAVRQEYVAINP---CLS 160
             D     +  + ++  +E    +    +A +    +R +F +AV+  Y+  N       
Sbjct: 100 PSDTLLANLDRRFLQEAIEKIIESNGYITAKKVRHRLRGIFNYAVQYSYIENNEVDYTTI 159

Query: 161 VERPK----RKTEGIRPWTKEDMQQF------KSFWSEGSQPRLAFEFLLYSGLRCSDSC 210
            ++PK     + +     T ++++        + +  + +   L       +G+R  +  
Sbjct: 160 PQKPKTLEELEKKRNNFLTMQEIKALVDVLNRREYHQKYADMVLVLAL---TGMRYGELT 216

Query: 211 RAGVQHLQ--NNIFSIK------------TQKTGTIITVELPDGFMKLLAMTPI------ 250
              ++++   NN   I              + T +I T+++ +  ++ +    +      
Sbjct: 217 ALQLKNIDFENNKIEITGNFDSVNKIKTLPKTTNSIRTIKVSESVIEAIQRQIVRLSERF 276

Query: 251 ----GKETFFIN-NDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGAT 303
                 +  F      Q      F    K    +A + K  S+H  R    +  A++G  
Sbjct: 277 QPLSSDDYIFCFEKWNQPTTIACFIQILKKYGKQAKIEKNLSSHIFRHSHISFLAESGLP 336

Query: 304 AHELMATYGWKTVDQA-ETYTK 324
              +M   G        E Y+ 
Sbjct: 337 IKSIMDRVGHSNAKMTLEIYSH 358


>gi|145301320|ref|YP_001144160.1| integrase/recombinase [Aeromonas salmonicida subsp. salmonicida
           A449]
 gi|142856097|gb|ABO92412.1| integrase/recombinase [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 315

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 47/313 (15%), Positives = 109/313 (34%), Gaps = 43/313 (13%)

Query: 65  RKKPTTLKWLISE-------YRKSAHWGSLAVNSRISFESYFDQIIRKSG-----DFDYR 112
           R  P  +  L S        Y  S      +  SR +  S+ + + R  G     D  + 
Sbjct: 8   RSPPQVIGALRSAQDNPAVAYLISLG----SKRSRQTMGSFLNIVARMIGFQNLRDCAWE 63

Query: 113 KITTKHIRSGVESRKHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
            I   H+++ ++    +   P++   +L +++ +   A   + +  +    +++ +    
Sbjct: 64  SIRRHHVQAVIQMLSDSDRAPATINTYLAALKGVALEAWTMKQIDTDSYQHIKQVRSVRG 123

Query: 170 GI----RPWTKEDMQQFK-----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220
                 R   K +++           S+G +       L+  GLR S+     ++ +   
Sbjct: 124 SRLPNGRALEKHEVRALYFTCENDRSSKGLRDAAILAVLVGCGLRRSEVVALDMECVITR 183

Query: 221 IFSIKTQKTGTIITVE-LPDG----FMKLLAMTPIGKETFFINNDKQ-------KMNATQ 268
             +++    G    +  +PDG     M+ +      +        ++       +M    
Sbjct: 184 DQALRVLGKGNKERIAYVPDGAWQRLMRWVEEVRGEQPGSLFQRIRRFDDVTAERMTDQA 243

Query: 269 FSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
                + +  +AG+ K + H +R+  A+   D G     +    G  +V   + Y +  D
Sbjct: 244 IYHILETRRIEAGLEKFAPHDLRRTFASAMLDNGEDIITVKDAMGHASVTTTQKYDRRGD 303

Query: 328 RIRLGIKNSRRIS 340
                 + SRR+ 
Sbjct: 304 ERLK--QASRRLE 314


>gi|50954597|ref|YP_061885.1| phage-related integrase [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50951079|gb|AAT88780.1| phage-related integrase [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 382

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 56/341 (16%), Positives = 115/341 (33%), Gaps = 42/341 (12%)

Query: 20  KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYR 79
           +    +RK    +      H       +++++T S    +YI+ P     T+  L   + 
Sbjct: 15  RYRVRYRKPDKSQTDKRGFHTKKEAELFLASVTVSKATGDYID-PALARVTVADLAETWL 73

Query: 80  KSAHWGSLAVNS-RISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---------T 129
                 +L  +S +    S+   +    G  + R I    ++  V              +
Sbjct: 74  AGKRPPTLKPSSFKPLLTSWNVHVEPTWGHREIRSILPSEVQGWVTRLGQPVISGGGDKS 133

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE--GIRPWTKEDMQQFKSFWS 187
            +  ++ L  +  +   A+    ++ NP  S+    RK+   G    T + +Q      +
Sbjct: 134 ATVVLRALGVLAGILDMAIADRRISRNPARSLTNLPRKSRKVGRAYLTHDQLQTLAEKSA 193

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---------------NNIFSIKTQKTGTI 232
               P L      Y GLR  ++    V+++                 +   + T KT   
Sbjct: 194 ---HPALVLTLG-YCGLRWGEATALRVRNVNQLRRRLHIEENAVLVGSDIHVGTPKTWEQ 249

Query: 233 ITVELPDGFMKLLAMTPIGK---ETFFINNDKQKMNATQFSIWF-----KAKATKAGVNK 284
            +V  P     +LA    GK   +  F             + WF     + ++    + +
Sbjct: 250 RSVPFPAFLSPMLAELCEGKGPNDLVFGKGRTHMKRGDYITGWFATAVRRVQSLDETMPR 309

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYT 323
            + H +R  +A+++  AGA    +    G  +     +TYT
Sbjct: 310 VTPHDLRHTAASLAVSAGANVKAVQKMLGHASASMTLDTYT 350


>gi|184155346|ref|YP_001843686.1| integrase [Lactobacillus fermentum IFO 3956]
 gi|183226690|dbj|BAG27206.1| integrase [Lactobacillus fermentum IFO 3956]
          Length = 292

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/278 (11%), Positives = 86/278 (30%), Gaps = 24/278 (8%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKH---IRSG 122
             L +       W +    ++++  SY   +   +      G  +++++           
Sbjct: 6   DALQASLVSYQEWLTKKGGAKLTIASYLTDLRDTAAYLTSRGVTNWQQVDRATLTVYLQS 65

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           +  +    ++  + ++S+R  + +      V  +P   ++  +         T ++    
Sbjct: 66  LNDKGRRTTTIQRRISSLRRFYVYLQVTGQVNHDPVALLKAKQTPRLAPVGLTPQEADLL 125

Query: 183 KSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
                       + R     L+ +G R ++        L   +  +   ++   + V L 
Sbjct: 126 PDHVPGKGVARERNRALVALLVATGARANELRDLQTGDLDLELGVVYLGQSSRRL-VPLN 184

Query: 239 DGFMKLL--------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288
           +     L          +   +   F+NN  Q ++         A   +A +    +   
Sbjct: 185 EQAQTYLTTYLTARADQSATDEGYVFLNNRGQPLSRQSIWEIVNATGQRANIEGAVTPQR 244

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           VR   A      GA    +    G +++   + Y + A
Sbjct: 245 VRDGFAYRLLAHGADLSLVQQLMGHQSILTTQVYLEQA 282


>gi|103485566|ref|YP_615127.1| phage integrase [Sphingopyxis alaskensis RB2256]
 gi|98975643|gb|ABF51794.1| phage integrase [Sphingopyxis alaskensis RB2256]
          Length = 302

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/292 (11%), Positives = 89/292 (30%), Gaps = 22/292 (7%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS-- 131
           L                ++ ++     +     G   +     +  +  ++ ++      
Sbjct: 13  LRQRLLDDMAMRRFGPETQRNYLRDVGRFATWLGRSPHTASAEEVRQFQIDQQQAGVPVP 72

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           +    ++++R  F   + +     +    + R K+  +     T  ++++          
Sbjct: 73  TMNSIVSALRFFFTETLDR----PDLARKLIRAKQVRKIPVVLTMAEVKRLLDATRCLKH 128

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ--KTGTIITVELP--------DGF 241
              A      +GLR ++     V ++ +    ++ +  K G      LP        D +
Sbjct: 129 Q-AALSVAYGAGLRVAEVSALKVSNIDSKRMLLRVERGKGGRDRNAMLPEGLLLLLRDWW 187

Query: 242 MKLLAMTPIGKETFFINNDKQ--KMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATIS 297
                   + ++ +          ++  Q        A  A ++K    H +R   AT  
Sbjct: 188 RAGRQQGILYRDGWLFPGQGAAAHISTRQLHRVVVEAAEAADIDKRVGPHTLRHSFATHL 247

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADR-IRLGIKNSRRISSVVDSDDP 348
            + G     + A  G   ++    Y + A +  R       R++     ++P
Sbjct: 248 LEDGVNIRVIQALLGHANLNTTAFYLQVATKTTRKVTSPLDRLALASPIEEP 299


>gi|315932644|gb|EFV11575.1| phage integrase family protein [Campylobacter jejuni subsp. jejuni
           327]
          Length = 354

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/286 (14%), Positives = 92/286 (32%), Gaps = 52/286 (18%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           LI E   S   G+L+  S+ ++            D    +    HI              
Sbjct: 102 LIVEVLASIT-GALSDASKKNYRIAVINFFDFL-DKQNEEDEKAHIFDI----------- 148

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS--- 190
                    L  WA             V+ P          ++E++++F           
Sbjct: 149 --------NLKNWAGIAG------SKGVKLP-------EFMSEEELKKFLDAIENADFRN 187

Query: 191 ---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVE----LPD 239
              + +L  + ++++G+R S++    +  +       I  I+ +     + +     + D
Sbjct: 188 NTVRNKLIIKIIIFTGIRVSEAINIKMGDISEENDLYIIRIRAKGNKYRVVMIKKELIYD 247

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATI 296
               +           F+N     +  +  S   +    +AG+ K    AH +R   AT+
Sbjct: 248 LLKNVSINYMSKDALLFVNKKGTPLTQSYVSRIVEQLLFRAGIRKQKNGAHMLRHTFATL 307

Query: 297 SADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSRRISS 341
                     +    G  +++ +  YT    D+++L  + ++ +S 
Sbjct: 308 LYKKQKDLVLVQEALGHASLNTSRIYTHFDNDKLKLAAQVAKELSD 353


>gi|209919293|ref|YP_002293377.1| phage integrase [Escherichia coli SE11]
 gi|209912552|dbj|BAG77626.1| phage integrase [Escherichia coli SE11]
          Length = 437

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 26/246 (10%), Positives = 75/246 (30%), Gaps = 46/246 (18%)

Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
            ++   ++  +  +   ++T++  +F++A    Y+  NP   ++  KR      P T+++
Sbjct: 147 TKNKAAAKGRSVVTVNYYMTTIAGMFQFAADHGYLEANPFQGIKPLKRARAEPDPLTRDE 206

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII----- 233
             +         Q +  +   +Y+G+R  +      + +     +I  ++  T +     
Sbjct: 207 FIRLIDAC-RHQQTKNLWSLAVYTGMRHGELVSLAWEDIDLKAGTITIRRNYTKLGEFTL 265

Query: 234 ----------------TVELPDGFMKLLAMTPIGKETFFINNDKQK-------------- 263
                            + +     ++  +         +    +               
Sbjct: 266 PKTEASTNRVVHLIQPAISVLKNQAEMTRLGKQHHIKVQLREYGRSVNHECTFVFNPQVV 325

Query: 264 ---------MNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGW 313
                             ++    +AG+ ++ A+  R   A  S  AGA    + +  G 
Sbjct: 326 RKSKQVGFIYKVDSIGDSWETAIKRAGIRHRKAYQSRHTYACWSLSAGANPSFIASQMGH 385

Query: 314 KTVDQA 319
            +    
Sbjct: 386 ASAQMV 391


>gi|205356361|ref|ZP_03223126.1| DNA recombinase [Campylobacter jejuni subsp. jejuni CG8421]
 gi|205345746|gb|EDZ32384.1| DNA recombinase [Campylobacter jejuni subsp. jejuni CG8421]
 gi|315058313|gb|ADT72642.1| Integrase-recombinase protein XERCD family [Campylobacter jejuni
           subsp. jejuni S3]
          Length = 354

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/286 (14%), Positives = 92/286 (32%), Gaps = 52/286 (18%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           LI E   S   G+L+  S+ ++            D    +    HI              
Sbjct: 102 LIVEVLASIT-GALSDASKKNYRIAVINFFDFL-DKQNEEDEKAHIFDI----------- 148

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS--- 190
                    L  WA             V+ P          ++E++++F           
Sbjct: 149 --------NLKNWAGIAG------SKGVKLP-------EFMSEEELKKFLDAIENADFKN 187

Query: 191 ---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVE----LPD 239
              + +L  + ++++G+R S++    +  +       I  I+ +     + +     + D
Sbjct: 188 NTIRNKLIIKIIIFTGIRVSEAINIKMGDISEENDLYIIRIRAKGNKYRVVMIKKELIYD 247

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATI 296
               +           F+N     +  +  S   +    +AG+ K    AH +R   AT+
Sbjct: 248 LLKNVSINYMSKDALLFVNKKGTPLTQSYVSRIVEQLLFRAGIRKQKNGAHMLRHTFATL 307

Query: 297 SADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSRRISS 341
                     +    G  +++ +  YT    D+++L  + ++ +S 
Sbjct: 308 LYKKQKDLVLVQEALGHASLNTSRIYTHFDNDKLKLAAQVAKELSD 353


>gi|157415130|ref|YP_001482386.1| phage integrase family site specific recombinase [Campylobacter
           jejuni subsp. jejuni 81116]
 gi|157386094|gb|ABV52409.1| site-specific recombinase, phage integrase family [Campylobacter
           jejuni subsp. jejuni 81116]
 gi|307747772|gb|ADN91042.1| Site-specific recombinase, phage integrase family [Campylobacter
           jejuni subsp. jejuni M1]
          Length = 354

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/286 (14%), Positives = 92/286 (32%), Gaps = 52/286 (18%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           LI E   S   G+L+  S+ ++            D    +    HI              
Sbjct: 102 LIVEVLASIT-GALSDASKKNYRIAVINFFDFL-DKQNEEDEKAHIFDI----------- 148

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS--- 190
                    L  WA             V+ P          ++E++++F           
Sbjct: 149 --------NLKNWAGIAG------SKGVKLP-------EFMSEEELKKFLDAIENADFRN 187

Query: 191 ---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVE----LPD 239
              + +L  + ++++G+R S++    +  +       I  I+ +     + +     + D
Sbjct: 188 NTVRNKLIIKIIIFTGIRVSEAINIKMGDISEENDLYIIRIRAKGNKYRVVMIKKELIYD 247

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATI 296
               +           F+N     +  +  S   +    +AG+ K    AH +R   AT+
Sbjct: 248 LLKNVSINYMSKDALLFVNKKGTPLTQSYVSRIVEQLLFRAGIRKQKNGAHMLRHTFATL 307

Query: 297 SADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSRRISS 341
                     +    G  +++ +  YT    D+++L  + ++ +S 
Sbjct: 308 LYKKQKDLVLVQEALGHASLNTSRIYTHFDNDKLKLAAQVAKELSD 353


>gi|15675393|ref|NP_269567.1| putative integrase [Streptococcus phage 370.2]
 gi|19746443|ref|NP_607579.1| putative integrase [Streptococcus pyogenes MGAS8232]
 gi|21910681|ref|NP_664949.1| putative integrase - phage associated [Streptococcus pyogenes
           MGAS315]
 gi|28876315|ref|NP_795489.1| putative integrase [Streptococcus pyogenes phage 315.3]
 gi|28895629|ref|NP_801979.1| integrase (phage associated) [Streptococcus pyogenes SSI-1]
 gi|71911035|ref|YP_282585.1| integrase [Streptococcus pyogenes phage 5005.2]
 gi|94994724|ref|YP_602822.1| DNA integration/recombination/inversion protein [Streptococcus
           phage 10750.3]
 gi|139473486|ref|YP_001128202.1| phage integrase [Streptococcus pyogenes str. Manfredo]
 gi|13622578|gb|AAK34288.1| putative integrase - phage associated [Streptococcus phage 370.2]
 gi|19748645|gb|AAL98078.1| putative integrase [Streptococcus pyogenes MGAS8232]
 gi|21904883|gb|AAM79752.1| putative integrase - phage-associated [Streptococcus pyogenes phage
           315.3]
 gi|28810878|dbj|BAC63812.1| putative integrase (phage associated) [Streptococcus pyogenes
           SSI-1]
 gi|71853817|gb|AAZ51840.1| phi5005.2 integrase [Streptococcus pyogenes phage 5005.2]
 gi|94548232|gb|ABF38278.1| DNA integration/recombination/inversion protein [Streptococcus
           phage 10750.3]
 gi|134271733|emb|CAM29966.1| phage integrase [Streptococcus pyogenes str. Manfredo]
 gi|322412210|gb|EFY03118.1| putative integrase [Streptococcus dysgalactiae subsp. dysgalactiae
           ATCC 27957]
          Length = 380

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 45/340 (13%), Positives = 106/340 (31%), Gaps = 49/340 (14%)

Query: 45  PAYMSALTGSTPK-REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII 103
            AY +A      K  E I   +        L+ E+        L  +S  S     ++I 
Sbjct: 38  RAYKAARKILEQKITEKIAQLKASELLFTELLDEWWAFYK-KELKRSSVASLRGNIEEIR 96

Query: 104 RKSG-DFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162
              G       I  K++++ +++   + +   +  + + + F +AV  + +  NP    +
Sbjct: 97  ETFGIGVKVVNIDPKYVQNYLDNLDCSRNKKERNKSMLNLAFDYAVGLDIIQDNPARRAK 156

Query: 163 RPKRKTE-------GIRPWTKEDMQ-QFKSFWSEGSQPRLAF--EFLLYSGLRCSDSCRA 212
            P+ K           +   +++++   K  +   S  RL    EF+  +G R  ++   
Sbjct: 157 LPRVKKTLEDWKKAEEKYLEEDEIKPLLKELYRRPSTYRLGLLAEFISLNGCRIGEAVSI 216

Query: 213 GVQHLQ------------NNIFSIKTQKTGTIIT-------------------VELPDGF 241
              + +            ++    +  +     T                   +E  +  
Sbjct: 217 EPCNYESKSRILQLHGTFDHTEGYRNGEKTAPKTLASYRETIMTSRELEILQELEFMNEL 276

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK--ATKAGVNK--SAHGVRKFSATIS 297
            K            F   +   +    F++  K      +  + K  ++H  R    +  
Sbjct: 277 EKNTNHRYRDMGYLFTTKNGVPIQTNSFNLALKKANERLEDPITKKLTSHIFRHTLISRL 336

Query: 298 ADAGATAHELMATYGWKTVD-QAETYTKGADRIRLGIKNS 336
           A+       +M   G       A+ YT    +++  + + 
Sbjct: 337 AENNVPLKSIMERVGHADAKTTAQIYTHVTKKMKSSVADI 376


>gi|188492593|ref|ZP_02999863.1| site-specific recombinase, phage integrase family [Escherichia coli
           53638]
 gi|188487792|gb|EDU62895.1| site-specific recombinase, phage integrase family [Escherichia coli
           53638]
          Length = 437

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 26/246 (10%), Positives = 75/246 (30%), Gaps = 46/246 (18%)

Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
            ++   ++  +  +   ++T++  +F++A    Y+  NP   ++  KR      P T+++
Sbjct: 147 TKNKAAAKGRSVVTVNYYMTTIAGMFQFAADHGYLEANPFQGIKPLKRARAEPDPLTRDE 206

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII----- 233
             +         Q +  +   +Y+G+R  +      + +     +I  ++  T +     
Sbjct: 207 FIRLIDAC-RHQQTKNLWSLAVYTGMRHGELVSLAWEDIDLKAGTITIRRNYTKLGEFTL 265

Query: 234 ----------------TVELPDGFMKLLAMTPIGKETFFINNDKQK-------------- 263
                            + +     ++  +         +    +               
Sbjct: 266 PKTEASTNRVVHLIQPAISVLKNQAEMTRLGKQHHIKVQLREYGRSVNHECTFVFNPQVV 325

Query: 264 ---------MNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGW 313
                             ++    +AG+ ++ A+  R   A  S  AGA    + +  G 
Sbjct: 326 RKSKQVGFIYKVDSIGDSWETAIKRAGIRHRKAYQSRHTYACWSLSAGANPSFIASQMGH 385

Query: 314 KTVDQA 319
            +    
Sbjct: 386 ASAQMV 391


>gi|320184250|gb|EFW59064.1| Phage integrase [Shigella flexneri CDC 796-83]
 gi|332094490|gb|EGI99539.1| prophage lambda integrase [Shigella boydii 3594-74]
          Length = 368

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 58/349 (16%), Positives = 108/349 (30%), Gaps = 42/349 (12%)

Query: 17  RHGKIIYYFRKG-HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT----- 70
           R G++ Y ++    G+   L          A  +    +  + EY      +  +     
Sbjct: 22  RTGRVYYQYKNPVTGKFHGLGTDKGKAEKIASTANQRIAAAEAEYFMRKIDESPSATKRR 81

Query: 71  ---LKWLISEYRKSAHWG----SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
              LK  +  Y K          +A  +          ++ + G+   +++  +     +
Sbjct: 82  GIRLKAWVDRYLKIQDTRLKNGDIAATTHKEKTRMAAYLVSRLGNHPLKELEVRDFALIL 141

Query: 124 ESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAI--NPCLSVERPKRKTEGIRPWTKEDM 179
           +    K   S+A         ++K A     V    NP  +  +P  K    R  T ED 
Sbjct: 142 DEWLDKDMVSTARVNRGLWVDIYKEAQHAGEVPPGWNPPEATRKPIPKVTRAR-LTMEDW 200

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239
           Q+  +   E    R A    + +G R  D C      + N    I   KTG  + + L  
Sbjct: 201 QKIYNATPEKHFIRNAMLLAIVTGQRRDDICHMRFSDVWNEHLHITQGKTGMRLALPLTL 260

Query: 240 G-------FMKLLA-MTPIGKETFFINNDK----QKMNATQFSIWFKAKATKAGV----- 282
                     +++          + I++      + M+    S +F      AG+     
Sbjct: 261 RCDAIGITLKEVIDGCRDRILSPYLIHSRHQKQPKPMSKDNLSDYFAKARDLAGIIPPAG 320

Query: 283 --NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY--TKGAD 327
               + H  R  S  +    G     L    G K     + Y  T+G +
Sbjct: 321 KTPPTFHEQRSLSERLYRAQGIDTKTL---LGHKVQATTDRYNDTRGQE 366


>gi|260904385|ref|ZP_05912707.1| phage integrase family protein [Brevibacterium linens BL2]
          Length = 160

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 44/140 (31%), Gaps = 12/140 (8%)

Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELP-------DGFMKLLAMTPI 250
           +L+ GLR  +     V+ +      I     G     V L        D ++        
Sbjct: 1   MLWCGLRSCEVLALHVKDVDIGGRWITVTGKGAKQRRVPLDADVASVIDVYLLAERPASD 60

Query: 251 GKETFFI---NNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHE 306
             + F +    +  Q + A      F+      GV     H +R    T+ A+AG     
Sbjct: 61  SDQLFLVAKGTHRGQGLTAAGLRTIFRYHRDLTGVAGGHPHALRHTFGTVLAEAGVDLAV 120

Query: 307 LMATYGWKTVDQAETYTKGA 326
           + A  G   VD    Y   A
Sbjct: 121 MQALLGHAHVDTTARYVHLA 140


>gi|189462460|ref|ZP_03011245.1| hypothetical protein BACCOP_03148 [Bacteroides coprocola DSM 17136]
 gi|189430621|gb|EDU99605.1| hypothetical protein BACCOP_03148 [Bacteroides coprocola DSM 17136]
          Length = 413

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 42/281 (14%), Positives = 98/281 (34%), Gaps = 31/281 (11%)

Query: 88  AVNSRISFESYFDQIIR------KSGDFDYRKITTKHIRSG-VESRKHTPSSAI---QFL 137
           A  + + ++  + ++        +  D   R+I  K +       R  +  +     +F+
Sbjct: 130 APATLVKYDRTYRRLEEFMKVKYRISDIALREIDHKFVTDFEFYLRTVSRCNENTTGKFM 189

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERP-KRKTEGIRPWTKEDMQQFKSFWSEGSQ---PR 193
              R +   A    ++ ++P  +     K    G    T+E++++      +  +    R
Sbjct: 190 QIFRKIVLIAKNNGWITVDPFANYHIHMKAVDRGY--LTEEELERILKKDFQSQRLEQVR 247

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHL-----QNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248
             F F  ++GL   D      +++      +    +  QKT T + + L    + +L   
Sbjct: 248 DIFIFSCFTGLAYIDVYNLKKENICTSFDGSKWLKLHRQKTATPVNLPLLKIPLAILEKY 307

Query: 249 PIGKETFFINNDKQKMNATQFSIWF-KAKATKAGVNK--SAHGVRKFSATIS-ADAGATA 304
                    NN    + + Q +  + K  A   G+ K  + H  R   AT +    G   
Sbjct: 308 EGK----LKNNRVLPVLSNQKANSYLKEIADLCGIKKNITFHLARHTFATTTTLSKGVPI 363

Query: 305 HELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345
             +    G   +   + Y +  +      ++ + ++S + S
Sbjct: 364 ETVSKLLGHTNIKTTQIYARITNEK--IREDMKVLASKLTS 402


>gi|57237704|ref|YP_178952.1| phage integrase family site specific recombinase [Campylobacter
           jejuni RM1221]
 gi|57166508|gb|AAW35287.1| site-specific recombinase, phage integrase family [Campylobacter
           jejuni RM1221]
          Length = 354

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/286 (14%), Positives = 92/286 (32%), Gaps = 52/286 (18%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           LI E   S   G+L+  S+ ++            D    +    HI              
Sbjct: 102 LIVEVLASIT-GALSDASKKNYRIAVINFFDFL-DKQNEEDEKAHIFDI----------- 148

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS--- 190
                    L  WA             V+ P          ++E++++F           
Sbjct: 149 --------NLKNWAGIAG------SKGVKLP-------EFMSEEELKKFLDAIENADFKN 187

Query: 191 ---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVE----LPD 239
              + +L  + ++++G+R S++    +  +       I  I+ +     + +     + D
Sbjct: 188 NTIRNKLIIKIIIFTGIRVSEAINIKMGDISEENDLYIIRIRAKGNKYRVVMIKKELIYD 247

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATI 296
               +           F+N     +  +  S   +    +AG+ K    AH +R   AT+
Sbjct: 248 LLKNVSINYMSKDALLFVNKKGTPLTQSYVSRIVEQLLFRAGIRKQKNGAHMLRHTFATL 307

Query: 297 SADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSRRISS 341
                     +    G  +++ +  YT    D+++L  + ++ +S 
Sbjct: 308 LYKKQKDLVLVQEALGHASLNTSRIYTHFDNDKLKLAAQVAKELSD 353


>gi|46580471|ref|YP_011279.1| phage integrase family site specific recombinase [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|46449890|gb|AAS96539.1| site-specific recombinase, phage integrase family [Desulfovibrio
           vulgaris str. Hildenborough]
          Length = 474

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 64/178 (35%), Gaps = 14/178 (7%)

Query: 161 VERPKRKTEGIRPWTKE-DMQQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHL 217
           V      +   +P +   +     +  +E  + R     E L  SGLR S++    V   
Sbjct: 228 VPTLPAGSTSRKPLSTAVESMSGDTLHAEAIRRRDLALAELLYGSGLRISEALGLDVLDA 287

Query: 218 QNNIFSIKTQKTGTIITV-ELPD----GFMKLLA----MTPIGKETFFINNDKQKMNATQ 268
             +   ++    G+   +  L D       + L     +   G+   F+     +++  Q
Sbjct: 288 DPSAGVVRVLGKGSKERMSPLSDTSVDALREWLHFRHHLASEGERALFVGARGDRLDRRQ 347

Query: 269 FSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            +    A   +AG+ +S   HG+R   AT   +AGA    +    G   +   + YT 
Sbjct: 348 ATRIIDALCRRAGLPQSVSPHGLRHSFATHLLEAGADLRSVQELLGHARLATTQRYTH 405



 Score = 40.4 bits (93), Expect = 0.42,   Method: Composition-based stats.
 Identities = 15/108 (13%), Positives = 41/108 (37%), Gaps = 8/108 (7%)

Query: 85  GSLAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIR---SGVESRKHTPSSAIQF 136
              +  +  ++ +   Q          G      +T +H++   + +   +   SS  + 
Sbjct: 57  KGYSPATVTAYGTDLMQFHGVLTAEGFGLDAPEDVTRRHVQRYLAELHRLRTARSSVARK 116

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
           L+++R  F++ +R   V  +P  +V  P+++    R    + +     
Sbjct: 117 LSALRAFFRYMLRLRRVTADPVAAVHNPRQEKRQPRTLNVDQVFALLD 164


>gi|86152145|ref|ZP_01070357.1| site-specific recombinase, phage integrase family [Campylobacter
           jejuni subsp. jejuni 260.94]
 gi|86153297|ref|ZP_01071501.1| site-specific recombinase, phage integrase family [Campylobacter
           jejuni subsp. jejuni HB93-13]
 gi|121612957|ref|YP_001000547.1| phage integrase family site specific recombinase [Campylobacter
           jejuni subsp. jejuni 81-176]
 gi|315124372|ref|YP_004066376.1| site-specific recombinase, phage integrase family [Campylobacter
           jejuni subsp. jejuni ICDCCJ07001]
 gi|85840930|gb|EAQ58180.1| site-specific recombinase, phage integrase family [Campylobacter
           jejuni subsp. jejuni 260.94]
 gi|85843023|gb|EAQ60234.1| site-specific recombinase, phage integrase family [Campylobacter
           jejuni subsp. jejuni HB93-13]
 gi|87249540|gb|EAQ72500.1| site-specific recombinase, phage integrase family [Campylobacter
           jejuni subsp. jejuni 81-176]
 gi|315018094|gb|ADT66187.1| site-specific recombinase, phage integrase family [Campylobacter
           jejuni subsp. jejuni ICDCCJ07001]
          Length = 354

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/286 (14%), Positives = 92/286 (32%), Gaps = 52/286 (18%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           LI E   S   G+L+  S+ ++            D    +    HI              
Sbjct: 102 LIVEVLASIT-GALSDASKKNYRIAVINFFDFL-DKQNEEDEKAHIFDI----------- 148

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS--- 190
                    L  WA             V+ P          ++E++++F           
Sbjct: 149 --------NLKNWAGIAG------SKGVKLP-------EFMSEEELKKFLDAIENADFKN 187

Query: 191 ---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVE----LPD 239
              + +L  + ++++G+R S++    +  +       I  I+ +     + +     + D
Sbjct: 188 NTIRNKLIIKIIIFTGIRVSEAINIKMGDISEENDLYIIRIRAKGNKYRVVMIKKELIYD 247

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATI 296
               +           F+N     +  +  S   +    +AG+ K    AH +R   AT+
Sbjct: 248 LLKNVSINYMSKDALLFVNKKGTPLTQSYVSRIVEQLLFRAGIRKQKNGAHMLRHTFATL 307

Query: 297 SADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSRRISS 341
                     +    G  +++ +  YT    D+++L  + ++ +S 
Sbjct: 308 LYKKQKDLVLVQEALGHASLNTSRIYTHFDNDKLKLAAQVAKELSD 353


>gi|289166187|ref|YP_003456325.1| integrase [Legionella longbeachae NSW150]
 gi|288859360|emb|CBJ13296.1| putative integrase [Legionella longbeachae NSW150]
          Length = 375

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/244 (12%), Positives = 75/244 (30%), Gaps = 22/244 (9%)

Query: 99  FDQIIRKSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFLTSMRVLFK-----WAVRQ 150
             ++++  GD     I    ++S +E R+    +  +    L  +R +       W    
Sbjct: 88  LRELVKYIGDMPIEAIHIGSLQSFIEGRRKDEVSTRTINHGLMIVRRILNLAASEWMDEF 147

Query: 151 EYVAINPCLSVER-PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDS 209
               +N    ++  P+       P + ++  +      E  +    F     +G R  + 
Sbjct: 148 GLTWLNSAPKIKLLPEPDLRKPYPLSWDEQHKLFQQLPEHLKSMALFAV--NTGCRDREI 205

Query: 210 CRAGVQ---------HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINND 260
           C              H+   I   +  K G    +   +   +++        T   +  
Sbjct: 206 CELRWDWEIQIPELPHIIVFIVPGELVKNGEERLIVCNETVREVIEGQRGKHSTHVFSFK 265

Query: 261 KQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
            + ++    S  ++    KA + +   H ++         AG +  +     G ++    
Sbjct: 266 GRPLSR-MLSTGWRQAREKAKLPEVRVHDLKHTFGRRLRAAGVSFEDRQDLLGHRSGRIT 324

Query: 320 ETYT 323
             Y+
Sbjct: 325 THYS 328


>gi|266623820|ref|ZP_06116755.1| prophage LambdaCh01, site-specific recombinase, phage integrase
           family [Clostridium hathewayi DSM 13479]
 gi|288864359|gb|EFC96657.1| prophage LambdaCh01, site-specific recombinase, phage integrase
           family [Clostridium hathewayi DSM 13479]
          Length = 397

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 54/330 (16%), Positives = 105/330 (31%), Gaps = 56/330 (16%)

Query: 39  HESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRIS-FES 97
           HE  F  AY +          ++        TLK  +  + +      +   +R+    +
Sbjct: 51  HEDEFKKAYRA---------YHLAHQINTEVTLKDYLIYWFEEIFSQRIETTTRMVGAYA 101

Query: 98  YFDQIIRKSG-DFDYRKITTKHIRSGVES-RKHTPSSAIQFLTSMRVLFKWAVRQEYVAI 155
            +D I+     D   R    +++ + +E   K + S+  +    + +  K AV   Y+  
Sbjct: 102 VYDLILPNIEYDIKVRFANAEYLDALLERVAKVSASAGNKGREILNMAMKEAVIGGYIKT 161

Query: 156 NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ 215
           NP    +  KR+   I   +KE ++      SE     L     L+ GLR  +       
Sbjct: 162 NPVTGTKPYKRQKPKITILSKEKIKVLLKASSEN-NWYLEILLGLFCGLRKGEILGLKFS 220

Query: 216 HLQNN--IFSIKTQ-------KTGT-----------------------IITVELPDGFMK 243
            L       +I+ Q       K G+                        +   + +   K
Sbjct: 221 DLDMEKRTVTIRRQIASDPLIKKGSGSKIDNYGLIERDPKTPNSFRVLRVPAIIIEELEK 280

Query: 244 LLAMTPIGK----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKF 292
              +    K          +      + +  + +  +       +K G+   + HG+R  
Sbjct: 281 RRRLVESNKVVYAGQYDDNDYISCQRNGKLHSLSALNSALTGICSKNGLPHITVHGLRHM 340

Query: 293 SATISADAGATAHELMATYGWKTVDQAETY 322
            ATI  + G    ++ A  G  +V     Y
Sbjct: 341 YATILIEMGVPLIKISALLGHGSVHTTFEY 370


>gi|265763441|ref|ZP_06092009.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_16]
 gi|263256049|gb|EEZ27395.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_16]
          Length = 379

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 45/251 (17%), Positives = 89/251 (35%), Gaps = 18/251 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT---PSSAIQFLTSMR 141
             +A +++   +     +       D+  I  ++IR+  E  K      SS   +   ++
Sbjct: 119 RQVADSTKQRQKCVLKALKEFGRIKDFTDICDENIRAYDEFAKKRCKCQSSVYNYHKILK 178

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS---QPRLAFEF 198
           V  + A     ++ NP  + +  + K    +  TKE++ + ++   +     + R  F F
Sbjct: 179 VFVREAYAAHLISENPYQNFKLDRGKRVARKFLTKEELAKLETKQIDDMCLNRVRDLFLF 238

Query: 199 LLYSGLRCSDSCRAGVQH--LQNNIFSIKTQ--KTGTIITVELPDGFMKLLAMTPIGKET 254
             Y+GL  +D      +   + + ++ I+ +  KTGT   + L D  M +L      K  
Sbjct: 239 CCYTGLAYADLAIFNFKDAIMTDGMYRIRDERIKTGTPYNISLMDKVMNILKKY-EFKLP 297

Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADA-GATAHELMATYGW 313
              N          +     A         ++H  R   AT  A A G     +    G 
Sbjct: 298 VISNQK-----YNSYLKILGAFCEIKK-KLTSHVARHTFATTVALANGVRIEVISKMLGH 351

Query: 314 KTVDQAETYTK 324
             +   + Y  
Sbjct: 352 TNIQTTQLYAH 362


>gi|254881898|ref|ZP_05254608.1| transposase [Bacteroides sp. 4_3_47FAA]
 gi|319641101|ref|ZP_07995804.1| hypothetical protein HMPREF9011_01401 [Bacteroides sp. 3_1_40A]
 gi|254834691|gb|EET15000.1| transposase [Bacteroides sp. 4_3_47FAA]
 gi|317387232|gb|EFV68108.1| hypothetical protein HMPREF9011_01401 [Bacteroides sp. 3_1_40A]
          Length = 400

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/262 (14%), Positives = 82/262 (31%), Gaps = 23/262 (8%)

Query: 88  AVNSRISFESYFDQI--IRKSGDFDYRKITTK---HIRSGVESRKHTPSSAIQFLTSMRV 142
            + +  ++    +     R+  D     +T++      +   SR  TP+S   +   +R 
Sbjct: 125 KIRTAETYRVTLNSFKKFRQDEDIMLDSLTSEIMEAYEAWHHSRGVTPNSISFYTRILRA 184

Query: 143 LFKWAVRQEYVA-INPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFE 197
           ++  AV  + +   NP   V          R      +++ K+            R  F 
Sbjct: 185 VYNRAVENDIIENRNPFRHV-YTGVDKTVKRALPLSIVKKIKALNLSMTPALDFARDMFL 243

Query: 198 FLLYS-GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFF 256
              Y  G+   D        L+N   + + +KTG  + +E       +L   P  +  + 
Sbjct: 244 ISFYLRGMSFIDMAFLKKSDLKNGYITYRRRKTGQQLVIEWTKEMQIILDKYPDNETGYL 303

Query: 257 INNDKQKMNATQFSIW---------FKAKA--TKAGVNKSAHGVRKFSATISADAGATAH 305
           +   K +    +++            K  A      +  + +  R   A+ +   G    
Sbjct: 304 LPIIKTQGTNERYTYRNVGYNINHNLKKIAQMVDISIPLTLYVARHSWASAAKAKGVPIS 363

Query: 306 ELMATYGWKTVDQAETYTKGAD 327
            +    G  +    + Y    D
Sbjct: 364 VISEGMGHDSETTTQIYLASLD 385


>gi|226366647|ref|YP_002784430.1| tyrosine recombinase [Rhodococcus opacus B4]
 gi|226245137|dbj|BAH55485.1| putative tyrosine recombinase [Rhodococcus opacus B4]
          Length = 307

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/270 (14%), Positives = 91/270 (33%), Gaps = 24/270 (8%)

Query: 76  SEYRKSAHWGSLAVNSRISFESY----FDQIIRKSGDFDYRKITTKHIRSGVESRKHT-- 129
             Y  +    + +  +R  +  +     + + + +   D  +++   +RS V        
Sbjct: 21  DRYLITG--KNASEMTRQCYTRHARAFLNTVAQSAAAVDLEQLSGPQVRSYVTDLGERYA 78

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP--KRKTEGIRPWTKEDMQQFKSFWS 187
           P S     T++R+  ++A     ++ +   +V      R  +  +    +++ +  +   
Sbjct: 79  PQSLKLKATALRIFLRFAWMSGQMSSDLTGAVGPVITHRSGKIPKALHPDELVRLLAAPD 138

Query: 188 E----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-KTGTIITVELP---- 238
                G++       +   G R  +     +  +      ++ + K G ++ + +P    
Sbjct: 139 RHTLGGTRDYALLVLMSRLGFRAGEVGGLRLDDIDWAHAKVRVRVKGGNVLELPIPGDVG 198

Query: 239 DGFMKLL--AMTPIGKETFFINNDKQK--MNATQFSIWFKAKATKAGVNK-SAHGVRKFS 293
              ++ L    TP      F+ N      M     +   +  A  AG+    AH +R  +
Sbjct: 199 SALVEYLQRRPTPTPHREVFLTNYGAPVPMTRGAVTQVVERNARTAGLGMVHAHRLRHSA 258

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYT 323
           A      G T  E+    G  T      Y+
Sbjct: 259 ARAVLVGGGTFEEVGELLGHATRQVTMAYS 288


>gi|239828150|ref|YP_002950774.1| integrase [Geobacillus sp. WCH70]
 gi|239808443|gb|ACS25508.1| integrase domain protein SAM domain protein [Geobacillus sp. WCH70]
          Length = 269

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 22/187 (11%), Positives = 63/187 (33%), Gaps = 14/187 (7%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYR--------KITTKHIRS 121
           T + L+  + +     +L  ++   + S  +  I+   + +          +   +++  
Sbjct: 40  TFEELLEIFIEDCELRNLREHTIKYYRSELNAFIKLLKEQEIELRVSEWTGETIKRNVIM 99

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
            +  +     S    L +MR  F +   +  +  NP   ++  K +   +  +  + ++ 
Sbjct: 100 YMREKGLKTVSINSRLRAMRAFFNFLEGRNLIKSNPMKDIKLLKDRKRIVETFDNQQIKA 159

Query: 182 FKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITV 235
                      G +       LL +G+R ++        +  +  +  I+  K      V
Sbjct: 160 LFKACDLRTFVGLRDYTIMMLLLETGVRVNELVGIKTTDIIWEQKVIRIRNTKGRFERFV 219

Query: 236 ELPDGFM 242
            + D  +
Sbjct: 220 PIQDTLL 226


>gi|77734443|emb|CAJ26228.1| integerase-recombinase [Thermotoga sp. RQ2]
          Length = 190

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/197 (19%), Positives = 69/197 (35%), Gaps = 25/197 (12%)

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAI-----NPCLSVERPKRKTEGIRPWTKEDMQQ 181
           K+TP++    L  ++    W   +  + I     N       P R T   +    +++++
Sbjct: 9   KNTPATQRNKLVVVKNYLNWKADRGLLNIEERFWNEAE----PPRHTVLPKAIELDEVRR 64

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN---IFSIKTQKTGTIITVELP 238
                   S  R  F+ L  +G+R S+     V  +  N      IK +     I + + 
Sbjct: 65  IIEACD-NSLYRAIFKVLANTGMRVSEIVNLSVHDISVNETARIRIKGKGNKERI-INIS 122

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATI 296
              ++ L         FF     +K +        K  A KAG+ K  + H  R   A  
Sbjct: 123 KELVEELM-----NSGFFE----KKPSVRSIQRAVKRYARKAGIKKKVTPHIFRHSFAVA 173

Query: 297 SADAGATAHELMATYGW 313
             + G   +++ A  G 
Sbjct: 174 LIERGVPLNKIQALLGH 190


>gi|71281181|ref|YP_267649.1| phage integrase family site specific recombinase [Colwellia
           psychrerythraea 34H]
 gi|71146921|gb|AAZ27394.1| site-specific recombinase, phage integrase family [Colwellia
           psychrerythraea 34H]
          Length = 334

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/234 (13%), Positives = 76/234 (32%), Gaps = 21/234 (8%)

Query: 99  FDQIIRKSGDFDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAIN 156
              + +   D   RK+T K   +    R       +  +    ++ +F   +R   +  N
Sbjct: 97  LKNMCKGLNDPIARKLTPKVWVAYRAIRLEKVCAKTVNEDQNKIKGVFNELIRLGELKTN 156

Query: 157 PCLSVERPKRKTEGIRPWTKEDMQQFKSFWS--EGSQPRLAFEFLLYSGLRCSDSCRAGV 214
           P   ++  K     +  ++K +M    +     +        +  L +G R  ++ +   
Sbjct: 157 PLNGLKNLKYSAPEMGFFSKNEMMTLLNELKNSDNIDAYYISKICLSTGARWGEAEKLLS 216

Query: 215 QHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274
           ++L++N  +    K G    + + D     +              + +  + +     F+
Sbjct: 217 RNLRDNFITFIKTKNGKTRIIPISDELKNEIPE-----------KEGRLFSDSM--KTFR 263

Query: 275 AKATKAGV----NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
               K G+     ++ H +R   A+     G     L    G   +++   Y  
Sbjct: 264 TSLAKTGITLPKGQATHALRHTFASHFMMNGGNILVLKEILGHARIEETMKYAH 317


>gi|28377499|ref|NP_784391.1| prophage Lp1 protein 1, integrase [Lactobacillus plantarum WCFS1]
 gi|28270331|emb|CAD63232.1| prophage Lp1 protein 1, integrase [Lactobacillus plantarum WCFS1]
          Length = 400

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 56/389 (14%), Positives = 123/389 (31%), Gaps = 47/389 (12%)

Query: 5   LRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSA-----LTGSTPKRE 59
           L+  P + +  T+ GK  Y  R+ +            +    +  A         T    
Sbjct: 8   LKRHPGIYEYETKRGK-KYGIRRSYTDINHKYRTWSKSGFITWRDADIELKKFEVTLGTG 66

Query: 60  YINSPRKKPTTLKWLISE-YRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTK 117
            I +      TL+    +  +++         +    ++Y++ Q+    G+    +IT +
Sbjct: 67  QITASISDTITLQAYFDKVLKRNIDLKLWRPATITQKKNYWNNQLKPVFGNQKINEITRQ 126

Query: 118 HIRSGVESRKHTPSSAIQFL---TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
             ++ ++       +    +   + M++L   AVR + +  N    +     K+   +  
Sbjct: 127 SYQNFIDQMIKDGYAKNTIITTNSVMQILMNDAVRNDVIVKNKLSGISIDGGKSPSSKTI 186

Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYS-GLRCSDSCRA-----GVQHLQNNIFSIKTQK 228
           T++   Q  +               L + G R  +               +        K
Sbjct: 187 TEKQYNQLMTIAPSVLSKYQYCMLALLTLGERREELMGLQFSSFKFSQWNDEEVCAIQFK 246

Query: 229 TG---------------TIITVELPDGFMKLLAMTPI-------------GKETFFINND 260
            G               +  T+ +    + +                     E+F   N+
Sbjct: 247 KGRTNAEPEGGDLKNNSSYRTIYVRGEMLNICHYAITYSQNIYSKTHRNINDESFLFVNE 306

Query: 261 KQ--KMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           K    M   Q +          G++ + H  R + AT++   G  A ++M   G  ++  
Sbjct: 307 KTGMPMGVQQANKVLNKVGEATGIHITPHIFRHYFATMALTNGQVATDVMHWLGHSSLQM 366

Query: 319 AETYTKGADRIRLGIKNSRRISSVVDSDD 347
            ++YT+   R  L + N    + + DSDD
Sbjct: 367 TQSYTRENVRGALNVFNGMAPTLLGDSDD 395


>gi|295092319|emb|CBK78426.1| Site-specific recombinase XerD [Clostridium cf. saccharolyticum
           K10]
 gi|295114672|emb|CBL35519.1| Site-specific recombinase XerD [butyrate-producing bacterium SM4/1]
          Length = 281

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/263 (12%), Positives = 81/263 (30%), Gaps = 24/263 (9%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
           +  YR        + ++   +        +   +          +       K+  SSA 
Sbjct: 11  MEAYRIYLMESEKSPSTIEKYLRDIRNFYQFLPEEKIIDREAVLLYKRQLIPKYQISSAN 70

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR- 193
             + ++     +   +E         V+  K +   +    + ++Q+ +         R 
Sbjct: 71  SMIIAVNGFLSFMGLEELR-------VKVFKFQ-RAMVSDPEREIQREEYIRLVEEAERM 122

Query: 194 ------LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
                 L  + L  +G+R S+      + + +   ++   K  T + + LP    + + +
Sbjct: 123 GKSRLSLILQTLGATGIRISELVCITREAVSSGRAAVNL-KGKTRVVI-LPKRLREKMEI 180

Query: 248 TPIGKE----TFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADA 300
                +      F+    + ++ +      K     AG+N+     H +R   A I    
Sbjct: 181 YCRENQIYSGPVFVTRGGKPVDRSNIWSEMKILCKTAGINEKKIFPHNLRHLFARIYYKN 240

Query: 301 GATAHELMATYGWKTVDQAETYT 323
                 L    G  +V+    YT
Sbjct: 241 NHDIVYLADILGHSSVETTRIYT 263


>gi|160890282|ref|ZP_02071285.1| hypothetical protein BACUNI_02722 [Bacteroides uniformis ATCC 8492]
 gi|317481519|ref|ZP_07940580.1| phage integrase [Bacteroides sp. 4_1_36]
 gi|156860014|gb|EDO53445.1| hypothetical protein BACUNI_02722 [Bacteroides uniformis ATCC 8492]
 gi|316902319|gb|EFV24212.1| phage integrase [Bacteroides sp. 4_1_36]
          Length = 388

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 53/315 (16%), Positives = 106/315 (33%), Gaps = 57/315 (18%)

Query: 43  FIPAY-----MSALTGSTPKREYINSPRKKPTTLKWLIS------EYRKSAHWGSLAVNS 91
           F+  Y              +     S R +  T K  +S       Y +   +  L  + 
Sbjct: 92  FMREYNNPSDYKTFHDFVKEHMKTYSRRIEMGTFKHHLSCMKKFKAYNELLQFQDLTPDY 151

Query: 92  RISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQE 151
              +      + ++ G+ +                     +A + ++++++    A R+ 
Sbjct: 152 LTDY---LIYMKKELGNTEI--------------------TAQRNMSTIKIYVTAAYRKG 188

Query: 152 YVAINPCLS--VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP------RLAFEFLLYSG 203
           Y+  NP     ++R K   +     T+E++ QF   + + + P         F F+ ++ 
Sbjct: 189 YIEENPFQEFHIKRIKSDVD---YLTEEELMQFVQLYYQRTLPEKLQLTLAFFLFMCFTS 245

Query: 204 LRCSDSCRAGVQHLQNNIFSIKTQK----TGTIITVELPDGFMKLLAMTPIGKE--TFFI 257
           +  +D+    ++ + N++ +    K        I + +P    KLL     G+E    F 
Sbjct: 246 MHITDARMFCIEQVNNDVLTYYRVKNRNCKPEPIKIPMPVPAEKLLEEWAEGREEGRLFR 305

Query: 258 NNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKT 315
           N           +   KA A + G+NK  SA   R   ATI          L    G   
Sbjct: 306 NVQ----CDQVVNRQLKAIAKELGINKKISAKTGRHTFATIYLRKTKDLSSLQKLLGHSN 361

Query: 316 VDQAETYTKGADRIR 330
           + +   Y    D  +
Sbjct: 362 IRETMIYAHVMDESK 376


>gi|298383457|ref|ZP_06993018.1| integrase [Bacteroides sp. 1_1_14]
 gi|298263061|gb|EFI05924.1| integrase [Bacteroides sp. 1_1_14]
          Length = 396

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 54/290 (18%), Positives = 111/290 (38%), Gaps = 26/290 (8%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVESRKHTPSSAI 134
           +++     SL  ++R +  S  + +     D  +  +T        + ++S+ +  ++  
Sbjct: 112 FKEEVSNSSLKESTRQNHLSTLELLQEYKKDIVFTDLTFEFVSSFDNYLQSKGYHLNTIA 171

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP-WTKEDMQQFKSFWSEG---- 189
           + +  ++     A+ +EY+ I      +   +  EG     + E++ + +    EG    
Sbjct: 172 KHMKHLKRYVNVAINKEYMDIQKYAFRKYKIKSIEGSHTHLSPEELNKMEEVNLEGKFTK 231

Query: 190 -SQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDGF--- 241
             + + AF F  Y+GLR SD       ++    Q      K+ KTG  + + L   F   
Sbjct: 232 FQKSKDAFLFCCYAGLRYSDFINLTAANIVELHQETWLIYKSVKTGIDVRLPLYLLFEGK 291

Query: 242 -MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISA 298
            +++L         FF   D   +N         A A  A ++K  S H  R  +AT+  
Sbjct: 292 GLRVLENYKDDLNGFFKLKDNSNVNKD-----LNALAKLAEIDKRISFHTARHTNATLLI 346

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
            +GA    +    G K+V   + Y    D     + +  + +    ++ P
Sbjct: 347 YSGANITTVQKLLGHKSVKTTQVYANIMDMT--IVHDLEKAAYSKLANRP 394


>gi|170747361|ref|YP_001753621.1| integrase family protein [Methylobacterium radiotolerans JCM 2831]
 gi|170653883|gb|ACB22938.1| integrase family protein [Methylobacterium radiotolerans JCM 2831]
          Length = 326

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/280 (13%), Positives = 83/280 (29%), Gaps = 31/280 (11%)

Query: 82  AHWGSLAVNSRISFESYFDQIIRKSGDFD-------YRKITTKHIRSGVESRKH---TPS 131
           A    ++ N+  ++     Q +                 +  + IR  + +R+    +  
Sbjct: 35  ARERRMSSNTVEAYGRDLRQFLHHLASRQGTPTIPMLIGLKVRDIRGFMAARRADEVSGR 94

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW--------TKEDMQQFK 183
           S ++ L  +R   ++  R+ +  ++    V  PK      RP         T   ++  +
Sbjct: 95  SLMRMLAGLRSFARFLEREGFGTVSALGGVRSPKVPRRLPRPLPVSAAVALTDTAIRAGE 154

Query: 184 SFWS-EGSQPRLAFEFLLYSGLRCSDSCRAGVQH--LQNNIFSIKTQKTGTIITVELPDG 240
                  ++       L  +GLR S++     +   L          K G    V +   
Sbjct: 155 EREPWVLARDAAVLALLYGAGLRISEALGLSRRDAPLPGVDQVTVLGKGGKQRMVPILPV 214

Query: 241 FMKLLA-------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRK 291
             + +A       +    +   F+      ++               G+    + H +R 
Sbjct: 215 VAQAVADYVAACPLPLPPEGPLFLGARGGPLSPRIIQYTVARARGALGLPESATPHALRH 274

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
             AT           +    G  ++   + YT   D  RL
Sbjct: 275 SFATHLLARQGELRAIQELLGHASLSTTQLYT-QVDAARL 313


>gi|78224199|ref|YP_385946.1| integron integrase [Geobacter metallireducens GS-15]
 gi|78195454|gb|ABB33221.1| Integron integrase [Geobacter metallireducens GS-15]
          Length = 334

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/312 (12%), Positives = 91/312 (29%), Gaps = 52/312 (16%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           L+   R        ++ +  ++  +  + I   G     ++  + + + +       + +
Sbjct: 20  LLDILRTRIRLKHYSLRTEQTYTEWAKRYILFHGKRHPAEMGKEEVEAFLSHLAVKHNVS 79

Query: 134 IQFLTSMRVLFKWAVRQEY-VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
               +  R    +  R+   + +     VE+ K+        T  ++Q   S  + G+  
Sbjct: 80  ASTQSQARAAILFLYREVLDIELPWLDDVEQAKKPQRLPVVLTVSEVQALLSRLT-GTHA 138

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-KTGTIITVELPDGFMKLLAMTPIG 251
            L    +  +G+R  ++ R  V+ +      I  +   G    + +    +       +G
Sbjct: 139 -LMGRLMYGTGMRLMETVRLRVKDVDFERSEIIVREGKGAKDRITMLPQAVAAPLREHLG 197

Query: 252 K--------------ETFFINNDKQKMNATQF-SIWF------------------KAKAT 278
           +              E    +   +K         W                   +  A 
Sbjct: 198 RVEALHGADLRAGFGEVHLPHALGKKYPNAGREWGWQYVFPAKQLSTDPRTGVTRRHHAD 257

Query: 279 KAGV---------------NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           + G+                 + H +R   AT    +G     +    G K V     YT
Sbjct: 258 EKGIQRAIRQAVRDAELAKPATPHTLRHSFATHLLQSGYDIRTVQELLGHKDVQTTMIYT 317

Query: 324 KGADRIRLGIKN 335
              +R   G+++
Sbjct: 318 HVLNRGGKGVES 329


>gi|207723385|ref|YP_002253784.1| integrase protein [Ralstonia solanacearum MolK2]
 gi|206588584|emb|CAQ35547.1| integrase protein [Ralstonia solanacearum MolK2]
          Length = 394

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 48/315 (15%), Positives = 106/315 (33%), Gaps = 31/315 (9%)

Query: 44  IPAYMSALTGSTPKREYINSPRK--KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ 101
           + A  +   G +P  E     R+         + +++   A    +A ++R   +S  D+
Sbjct: 46  LDAKKAVAQGKSPAHEKQREKRRLTAAKNFGDMTAQWLAGAR---MADSTRAMRKSIVDR 102

Query: 102 -IIRKSGDFDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPC 158
            I+    +    +IT   +R+     K    P++A+     ++ ++ +A+       NP 
Sbjct: 103 DILPAFQNRLLNEITADDLRALCGKVKGRGAPATAVHVRDIVKQVYAFAILHGEKVDNPA 162

Query: 159 LSVERPKRKT--EGIRPWTKEDMQQF-KSFWSEGSQP--RLAFEFLLYSGLRCSDSCRAG 213
             V      T     R  +  +++   +   S  + P  RLA   +L + +R S+   A 
Sbjct: 163 ADVGAASIATFVPKDRALSPLEIRLMSRQMESVATYPTIRLALRMVLLTLVRKSELIEAT 222

Query: 214 VQHLQNNIFSIK----TQKTGTIITVELPDGFMKLLAMTPI--GKETFFINNDK------ 261
              +     +        K      V L    + +L           F + +        
Sbjct: 223 WDEVDFENATWTIPKQRMKGRNPHVVYLSRQALDILVALHTCAAGSKFVLPSRYDSDRCM 282

Query: 262 QKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
                 + +     +A  AG+     + H +R+  +T+  + G     +      +    
Sbjct: 283 SHATLNRVTQIVAQRAKAAGLPLEPFTVHDLRRTGSTLLNEIGFNRDWIEKCLAHEEGRS 342

Query: 319 A-ETYTKG--ADRIR 330
           +   Y K   A++ R
Sbjct: 343 SRSIYNKAEYAEQRR 357


>gi|167760423|ref|ZP_02432550.1| hypothetical protein CLOSCI_02797 [Clostridium scindens ATCC 35704]
 gi|167661922|gb|EDS06052.1| hypothetical protein CLOSCI_02797 [Clostridium scindens ATCC 35704]
          Length = 412

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 50/379 (13%), Positives = 113/379 (29%), Gaps = 65/379 (17%)

Query: 22  IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK-KPTTLKWLISEYRK 80
           +Y +R    R  R    +                 + E I +  + K  TL  L   +  
Sbjct: 31  LYMYRYKDERTGRRLAVYSPDLAELRKKEKEIEKDQSEGILTDTQCKNMTLNDL---FEI 87

Query: 81  SAHWGSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIR---SGVESRKHTPSSAIQF 136
                 LA +++ ++   ++ ++R + G     ++   H+R   S +  +K++ S+    
Sbjct: 88  HMDTRKLAESTQANYRRMWNSLVRNELGQMKVVQVRPSHVRLFYSRLSKQKYSHSTIKFL 147

Query: 137 LTSMRVLFKWAVRQEYVAINPCLS-VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL- 194
              +   F+ AV  + +  NP    +       +     + +  +   ++        + 
Sbjct: 148 HNMILPSFEVAVDDDIIRKNPAKRTLGDYGEPEKKRTALSFDQQKNLLNYVKNSEVFHIY 207

Query: 195 --AFEFLLYSGLRCSDSCRAGVQHLQNNI-------------------FSIKTQKTGTII 233
               + ++ +GLRC +      + +                       F +   KT   I
Sbjct: 208 LPLLQVMIGTGLRCGELIGLTWKDVDLKTRTVYVNHQLIYKNYGDGCDFHVTMPKTEAGI 267

Query: 234 T-VELPDGFMKLLAMT---------PIG------KETFFINNDKQKMNATQFSIWFKAKA 277
             + +     K              P            F++   + M  T  +   +   
Sbjct: 268 REIPMSKMVAKAFETQRRLNFQMGIPRDVKIEGLSNFVFMSRSGRPMMPTTVNFILRDIV 327

Query: 278 T--------KAGVNK---------SAHGVRKFSATISADAGATAHELMATYGWKTVDQA- 319
                    +A   +         SAH +R  + T  A+       +    G   +    
Sbjct: 328 KAYNEEENERAKRERRKPEELPHISAHILRHTACTRMAETDLDMKVVQYVMGHANISVTM 387

Query: 320 ETYTKGADRIRLGIKNSRR 338
           E Y    DR R+  + ++ 
Sbjct: 388 EVYNHITDRSRIEKEIAKM 406


>gi|254252087|ref|ZP_04945405.1| Integrase [Burkholderia dolosa AUO158]
 gi|124894696|gb|EAY68576.1| Integrase [Burkholderia dolosa AUO158]
          Length = 418

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 49/307 (15%), Positives = 102/307 (33%), Gaps = 34/307 (11%)

Query: 50  ALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGD 108
           AL     KR    +      T KWL            +A +++   +S  D+ I+    +
Sbjct: 83  ALEKQREKRRLTAAKTFGEVTEKWLAGA--------RMADSTKAMRKSIVDRDILPAFQN 134

Query: 109 FDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
               +IT   +R+     K    P++A+     ++ ++ +A+       NP   V     
Sbjct: 135 RQLNEITADDLRALCNKVKGRGAPATAVHIRDIVKQVYAFAILHGEKVDNPAEDVGAASI 194

Query: 167 KT--EGIRPWTKEDMQQF-KSFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQ--- 218
            T     R  +  +++   +   S  + P  RLA   +L + +R S+  +A    +    
Sbjct: 195 ATFVPKDRALSPLEIRLMARQMESVATYPTIRLALRMILLTLVRKSELIQATWDEVDFVN 254

Query: 219 -NNIFSIKTQKTGTIITVELPDGFMKL---LAMTPIGKETFFINNDK-----QKMNATQF 269
                  +  K      V L    + +   L     G +    +              + 
Sbjct: 255 ATWTIPKQRMKGRNPHVVYLSRQALDIFVALHTCAAGSKFVLPSRYDADRCMSNATLNRV 314

Query: 270 SIWFKAKATKAGVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKG 325
           +     +A  AG+     + H +R+  +T+  + G     +      +    +   Y K 
Sbjct: 315 TQIVAERAKAAGLPLEPFTVHDLRRTGSTLLNEVGFNRDWIEKCLAHEDGRSSRSIYNKA 374

Query: 326 --ADRIR 330
             A++ R
Sbjct: 375 EYAEQRR 381


>gi|29347856|ref|NP_811359.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
 gi|253572433|ref|ZP_04849835.1| integrase [Bacteroides sp. 1_1_6]
 gi|29339758|gb|AAO77553.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
 gi|251837848|gb|EES65937.1| integrase [Bacteroides sp. 1_1_6]
          Length = 409

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 40/282 (14%), Positives = 93/282 (32%), Gaps = 28/282 (9%)

Query: 86  SLAVNSRISF---ESYFDQIIR---KSGDFDYRKITTKHIRSGVE----SRKHTPSSAIQ 135
             A  +  ++        + I+   K  D  + ++  + IR   +     + H   +   
Sbjct: 128 DRAPTTLSTYLFTYRTLSEFIKAKFKVSDLAFGQLNEQFIRDYQDFILMEKGHAVDTLRG 187

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP--- 192
           +L  ++ + + A ++ +         + PK+K    +  ++E+ ++ +       +    
Sbjct: 188 YLAILKKICRIAYKEGHSEKYHFCHFKLPKQKESTPKALSRENFEKLRDLEIPEKRRSHV 247

Query: 193 --RLAFEFLLYSGLRCSDSCRAGVQHL-----QNNIFSIKTQKTGTIITVELPDGFMKLL 245
             R  F F  Y+G   +D      ++L      N     + +KT  +  V+L    + L+
Sbjct: 248 ITRDLFLFACYTGTAYADVVSITRENLFTDEENNLWLKYRRKKTNYLGRVKLLPEALVLI 307

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATIS-ADAGA 302
                              +        K+    AG+++    H  R   A++   + G 
Sbjct: 308 EKYRDDARMTLF----PPQDYHTLRANMKSLRLMAGLSQDLVYHTARHSFASLITLEEGV 363

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
               +    G   +   + Y +     RL     R I +  D
Sbjct: 364 PIETISKMLGHSNIKTTQIYAR-VTPKRLFEDMDRFIEATRD 404


>gi|77360404|ref|YP_339979.1| integrase [Pseudoalteromonas haloplanktis TAC125]
 gi|76875315|emb|CAI86536.1| putative integrase [Pseudoalteromonas haloplanktis TAC125]
          Length = 308

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 44/300 (14%), Positives = 89/300 (29%), Gaps = 63/300 (21%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA----IQFLTSM 140
              A ++  ++  +    IR +       +    +   +    ++ + A     Q L ++
Sbjct: 4   KRYAKSTIEAYLFWIAAYIRFNNMQHPSSMGDTQVELYLNHLVNSQNVAQGTQAQALNAL 63

Query: 141 RVLFKWAVRQEYVAINPCLSVERPK--RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEF 198
             L+K     E +     LS++  K  R  +     T+ ++          ++  LA   
Sbjct: 64  SFLYK-----EIIKSPLSLSLDFVKSERPRKLPIVLTQTEVSALFKHCI--TKHYLACAL 116

Query: 199 LLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFF 256
           L  SG+R  +  R  +Q +  +     I   K G    V L    +  +       + + 
Sbjct: 117 LYGSGMRLMEVLRLRIQDIDFDYNCVRIWDGKGGKNRVVTLAGELIPQIRTQIQLVDNYL 176

Query: 257 ---INN-------------------------------------------DKQKMNATQFS 270
              +NN                                            +  ++  Q  
Sbjct: 177 QLDLNNPLFCGVYMPHLLRKKYPNHNKQLGWQYLFPSYKLSIDPESKQLRRHHIDEKQLQ 236

Query: 271 IWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
              K  A  A +NK  + H +R   AT    +GA    +    G   +   + YT    +
Sbjct: 237 RAVKKAAFNAHINKHVTPHTLRHSFATHLLQSGADIRTVQTQLGHSDIRTTQIYTHVLQQ 296


>gi|119383089|ref|YP_914145.1| phage integrase family protein [Paracoccus denitrificans PD1222]
 gi|119372856|gb|ABL68449.1| phage integrase family protein [Paracoccus denitrificans PD1222]
          Length = 356

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 65/331 (19%), Positives = 107/331 (32%), Gaps = 46/331 (13%)

Query: 20  KIIYYFRKG-HGRRI----RLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
             I+Y R    G+R+    R+    ++  + A   A        E     +    T    
Sbjct: 9   GEIWYIRGTVAGQRVYESTRIGDKRQAEILRARREA-----EIIERRAYGKAVTYTFAEA 63

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF----DYRKITTKHIRSGVESRKHTP 130
              Y +S   G            Y  +II+  G      D          + +       
Sbjct: 64  ALAYMESGGEG-----------KYLARIIKHFGPRWRLVDTDNDAVSRAAAALYPDAGPA 112

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           +   Q +T +  +++ A     V   P     R K     +R  T E+++   +      
Sbjct: 113 TINRQLITPISAVYRLAAEDGKV---PDRRFRRRKEPRTRLRWLTPEEVEALLAACDRRL 169

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNN--IFSIKTQKTGTIITVELPDGFMKLLAM- 247
            P +AF  LL +G R  ++    VQHL  +     +   K G    V+ P    +++   
Sbjct: 170 LPIVAF--LLGTGCRTGEALGLTVQHLHLDTCEAYVGVTKNGDGKMVQYPGRTRRIMVAS 227

Query: 248 ----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSAT 295
                     TP GK     N+   ++        F      AG+  + + H +R   AT
Sbjct: 228 GLPEAGAVFRTPKGKPYRLTNSSGSRLGGQ-IKGAFDKARDAAGLGEDVTPHTLRHTFAT 286

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGA 326
                      LM   GW+  D A  YTK A
Sbjct: 287 WHYAVNRDLILLMERGGWRKPDMAIGYTKLA 317


>gi|313113306|ref|ZP_07798907.1| site-specific recombinase, phage integrase family [Faecalibacterium
           cf. prausnitzii KLE1255]
 gi|310624374|gb|EFQ07728.1| site-specific recombinase, phage integrase family [Faecalibacterium
           cf. prausnitzii KLE1255]
          Length = 416

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 46/281 (16%), Positives = 88/281 (31%), Gaps = 46/281 (16%)

Query: 89  VNSRISFESYFD-QIIRKSGDFDYRKITT-----KHIRSGVESRKHTPSSAIQFLTSMRV 142
             + IS+      +I +       +            +  +    +T ++ I +      
Sbjct: 113 PATFISYNRMITGRITQYFEPLGLKLCEVTPQVLDEFQEKILLEGYTTNTVIHYHAIFGK 172

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202
            FK AVR++Y+  NP L V+RPK+ +     ++K+++QQ     S+     L      Y 
Sbjct: 173 AFKDAVRKDYLETNPMLKVDRPKKNSFRPNFYSKDEVQQLLEV-SQDDPLHLCILITAYY 231

Query: 203 GLRCSDSCRAGVQHLQNNIFSIK--------------------TQKTG-TIITVELPDGF 241
           GLR S+        +     SI                       K   +  T+ L    
Sbjct: 232 GLRRSEVLGLKWSSIDFERKSITINHKVTEQLVNGKYVPVVSDVMKNKTSCRTLPLIPAV 291

Query: 242 MKLLAMTPIGKETF-------FINNDKQKMNATQFSIWFK--------AK-ATKAGVNK- 284
            + L      ++ +       +       +   Q     +            TK G+   
Sbjct: 292 EEELLKQKEKQQLYRKLFKKSYSTEYLDFVCTDQEGKLIRPNFVTEHFDWLLTKYGLKHI 351

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTK 324
             H +R   A++    G +  ++    G  T    A+ Y  
Sbjct: 352 RFHDLRHSCASLMVMNGVSMKQVQEWLGHSTFSTTADIYAH 392


>gi|119490343|ref|ZP_01622821.1| Phage integrase [Lyngbya sp. PCC 8106]
 gi|119454002|gb|EAW35156.1| Phage integrase [Lyngbya sp. PCC 8106]
          Length = 312

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 44/282 (15%), Positives = 91/282 (32%), Gaps = 32/282 (11%)

Query: 85  GSLAVNSRISFESYFDQIIR-------KSGDFDYRKITTKHIRSGVESR--KHTPSSAIQ 135
             L   SR +     + I          +   ++  +  +H  +   +   +++ S+A +
Sbjct: 27  QGLGEGSRRTMRGALNTIAAILTNGECDANTLNWAALRYQHTAAIQAALLNRYSTSTAQK 86

Query: 136 FLTSMRVLFKWAVRQEYVAINP-CLSVERPKRKTEGI---RPWTKEDMQQFKSFW----- 186
            + ++R + + A + + +       +V+    K       R  ++ ++    +       
Sbjct: 87  MMAALRRVLEEARKLQLMDAESYSTAVDLLSIKVYVNLRGRALSQSEISALINVCQADPT 146

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKL 244
           S+G + R     L  SGLR ++  +  V+          I   K     TV LP+  +  
Sbjct: 147 SQGVRDRALIAILRGSGLRRAEVVKLRVKDFNPVTGALKILQSKGRKDRTVYLPENAIAW 206

Query: 245 LA-----MTPIGKETFFINNDKQK-----MNATQFSIWFKAKATKAGVNK-SAHGVRKFS 293
           +                      K     M         K +A +AGV   S H  R+  
Sbjct: 207 VENWLDVRGRSPGPLLCPIRKGGKIERRYMTPQAVFFIMKKRALEAGVESFSPHDFRRTF 266

Query: 294 ATISADAGATAHELMATYGWKTVDQAETY-TKGADRIRLGIK 334
            +   DAG     +    G         Y  +G +  R  ++
Sbjct: 267 CSDLLDAGVDIVTVQKLAGHANPMTTANYDRRGEETKRKAVQ 308


>gi|76810002|ref|YP_331724.1| integrase or site-specific recombinase [Burkholderia pseudomallei
           1710b]
 gi|76579455|gb|ABA48930.1| Integrase or site-specific recombinase [Burkholderia pseudomallei
           1710b]
          Length = 414

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/301 (12%), Positives = 91/301 (30%), Gaps = 22/301 (7%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWL--ISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSG 107
           + G           R    +L  +   +EY         +     +     ++ I    G
Sbjct: 86  VAGGVSPVADARKDRGAVKSLDTIHEFAEYWIEQQMMGKSAEYLRTTRRALEKDIYPAIG 145

Query: 108 DFDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV--ER 163
                 +T   + +  +  K    P  A+     ++ ++++A+ ++ V  NP  ++    
Sbjct: 146 GKSVSDVTPGDVLAICDRIKKRGAPKMALSTRNILKRIYEYAIARQLVTSNPAQAIVARF 205

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQPR---LAFEFLLYSGLRCSDSCRAGVQHLQNN 220
              +    R  +  ++ +        S  R   LA   L+ + +R S+   A       +
Sbjct: 206 VATQASRDRVLSPNEIGRVLRAVYASSIRRPLKLAIHLLVLTMVRKSELIEARWDEFDLD 265

Query: 221 IFSIK----TQKTGTIITVELPDGFMKLLA---MTPIGKETFFINNDK--QKMNATQFSI 271
               +      K      V L    + +L     T    +  F ++    + +  +  + 
Sbjct: 266 ASIWRIPAERMKKDREHWVYLAPQAVAMLRELHATRTSHQYVFPSSRGADRPIAKSTLNQ 325

Query: 272 WFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG--ADRI 329
             +        +   H  R+ ++T   + G  +  +              Y +   AD  
Sbjct: 326 AVR-ALDMDVQHFVLHDFRRTASTHLHEMGQPSDAIEKALAHSIKGIKGVYNRAEYADER 384

Query: 330 R 330
           R
Sbjct: 385 R 385


>gi|62179760|ref|YP_216177.1| prophage lambda integrase (Int(lambda)) [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|62127393|gb|AAX65096.1| Prophage lambda integrase (Int(Lambda)) [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|322714230|gb|EFZ05801.1| Prophage lambda integrase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
          Length = 375

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 55/342 (16%), Positives = 103/342 (30%), Gaps = 43/342 (12%)

Query: 20  KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKR--------EYINSPRKKPTTL 71
           KI + ++     +      +E   I     A      +R        + I S + K  T 
Sbjct: 25  KIYWRYKHPVTGKFHSLGTNEEEAIAIASEANARLAEQRTRQILAISDRIASSKGKAITT 84

Query: 72  KWLISEYRKSA----HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR- 126
              +  Y K        G +  N+          +  + G      +  + I   +E   
Sbjct: 85  STWLDRYWKIQGERLESGDIKPNTYKQKAKPVTLLRERVGMKIISSVDVRDIAEILEEYI 144

Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAI--NPCLSVERPKRKTEGIRPWTKEDMQQFK 183
               P  A    + +  +FK A     V    NP L+ ++P+R+    R    E+ Q+  
Sbjct: 145 SDGQPRMAQVIRSVLIDVFKEAQHFGEVPPGYNPALATKQPRRRITRQR-LNLEEWQRIF 203

Query: 184 SFWSE-GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
           +           A    L +G R  D  +     + ++   I  +KTG+ I + L     
Sbjct: 204 NIADANHQYMGNAMLLALVTGQRLGDISKMKFSDIWDDQLHIVQEKTGSKIAIPLSLRLN 263

Query: 243 KL------------LAMTPIGKETFFINN----DKQKMNATQFSIWFKAKATKAGVN--- 283
            +                      FF          ++ +   ++ F     KA ++   
Sbjct: 264 AINWSLRDVVTRCRDYAVSPYLVHFFRTTSQAERGAQVKSHTITMNFSKARDKADIDWGS 323

Query: 284 ---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
               + H  R   A    +A     +     G K+ +Q   Y
Sbjct: 324 GTPATFHEQR-SLAERLYEAQGINTQ--KLLGHKSPNQTARY 362


>gi|323146177|gb|ADX32415.1| phage integrase family protein [Cronobacter phage ENT90]
          Length = 345

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 47/315 (14%), Positives = 92/315 (29%), Gaps = 36/315 (11%)

Query: 29  HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLA 88
            G+RIR        F     +        +   N  +    TLK LI+ +  SAH  +L 
Sbjct: 21  KGKRIR------KKFATKGEALAYEQHAVQLPWNEEQTDRRTLKDLITSWY-SAHGITLK 73

Query: 89  VNSRIS------FESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH----TPSSAIQFLT 138
              +        FE   + +        + +   + ++            +P +    L 
Sbjct: 74  DGEKRQLAMLHAFECMGEPLAVDFDAQMFSRYRERRLKGDFARSSRVKEVSPRTLNLELA 133

Query: 139 SMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL--A 195
             R +F    R   +   NP   +   + +   +   T   +    +      Q  L   
Sbjct: 134 YFRAVFNELGRLGEWKGENPLRHIRPFRTEESEMAWLTHSQIAHLLAECRNSDQADLETV 193

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF 255
            +  L +G R S++       +     +    K     TV + +   +++     G+   
Sbjct: 194 VKICLATGARWSEAEGLKKSQISKYKITYIKTKGRKNRTVPITESIYRIIPENKTGR--L 251

Query: 256 FINNDKQKMNATQFSIWFKAKATKAGVNKSA----HGVRKFSATISADAGATAHELMATY 311
           F +              F++   + G+   A    H +R   A+     G     L    
Sbjct: 252 FADCYG----------AFRSALERTGIELPAGQLTHVLRHTFASHFMMNGGNLLVLQRVL 301

Query: 312 GWKTVDQAETYTKGA 326
           G   +     Y   A
Sbjct: 302 GHTDIKMTMRYAHFA 316


>gi|161614526|ref|YP_001588491.1| hypothetical protein SPAB_02275 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|168822346|ref|ZP_02834346.1| prophage lambda integrase [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|161363890|gb|ABX67658.1| hypothetical protein SPAB_02275 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|205341262|gb|EDZ28026.1| prophage lambda integrase [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|267993018|gb|ACY87903.1| prophage lambda integrase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
          Length = 380

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 55/351 (15%), Positives = 115/351 (32%), Gaps = 51/351 (14%)

Query: 16  TRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY----------INSPR 65
            R GKI + ++     R       E         A T    +R                R
Sbjct: 21  KRTGKIYWQYKHPVSGRFHSLGTDEVEAKKVASEANTIIAEQRTRQVLSVNDRLARMKGR 80

Query: 66  KKPTTLKWLISEYRKSAHWG----SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121
           +   T+   I +Y +          L  NS               G    + I+   I  
Sbjct: 81  RTDITVTEWIDKYIEIQDERLKHRELRPNSYRQKAKPVRLFREHCGMQYLKDISALDISE 140

Query: 122 GVESRKHTPSSAIQFLTSMRVL----FKWAVRQEYVAI--NPCLSVERPKRKTEGIRPWT 175
             ++ K       +    +R++    FK A    +V    NP L+ ++P+ +    R  +
Sbjct: 141 ITDAVKAEGH--NRMAQVVRMVLIDVFKEAQHNGHVPPGYNPALATKQPRNRVTRQR-LS 197

Query: 176 KEDMQQ-FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234
            E+ +  +++   +    +      + +G R  D C    + + +++  ++ +KTG+ + 
Sbjct: 198 LEEWKTIYEAAEKQEPYLQCGMLLAIITGQRLGDICNMKFKDIWDDMLHVEQEKTGSRLA 257

Query: 235 VELPDGFMKLLAMTPIG-----------------KETFFINNDKQKMNATQFSIWFKAKA 277
           + L D   + L +T                    + T    N   +++ +  +  FK   
Sbjct: 258 IPL-DLKCEALGLTLRDVVSKCRDAVISKYLVHFRHTTSQANRGDQVSTSSLTSTFKKAR 316

Query: 278 TKAGVNK------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
            ++G+        + H  R  S  +  + G    +L    G K+    + Y
Sbjct: 317 DRSGLKWDKGSPPTFHEQRSLSERLYREQGVDTQKL---LGHKSRKMTDKY 364


>gi|325860441|ref|ZP_08173553.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
 gi|325482099|gb|EGC85120.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
          Length = 414

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 48/269 (17%), Positives = 89/269 (33%), Gaps = 28/269 (10%)

Query: 96  ESYFDQIIRKSG--DFDYRKITTKHIRSG---VESRKHTPSSAIQFLTSMRVLFKWAVRQ 150
           +    + ++  G  D     IT          ++ R    ++  ++L  +  L   AV Q
Sbjct: 135 DKLLTEFVKDKGMMDITISAITEDLFEEYGFYLKKRGLATATMNRYLCWLSRLMYHAVSQ 194

Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WSEGSQPRLAFEFLLYSGLRCS 207
             +  NP  + +  K + + IR   K ++ +  +      E  Q R  F F  ++GL  +
Sbjct: 195 RIIRCNPFENAKYEKAEQK-IRFLQKSEVSKLMALRVPDKEAEQARRLFVFACFTGLAIA 253

Query: 208 DSCRAGVQHLQ---NNIFSIK--TQKTGTIITVELPDGFMKLL----AMTPIGKETFFIN 258
           D       H+Q   +    I+   QKT     V L      ++       P  KE   + 
Sbjct: 254 DMEHLQFGHVQTAADGQKYIRKERQKTKVEFVVPLHPIAETIINQCKKEQPSMKEMQTVK 313

Query: 259 NDKQKM------NATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMAT 310
                       + +  S          G+    S H  R    T+S  AG     +   
Sbjct: 314 EKGDDFIFHCACSRSVMSAKLSIVGKACGIRERLSYHMARHTFGTMSLSAGIPIESIAKM 373

Query: 311 YGWKTVDQAETYTKGADRIRLGIKNSRRI 339
            G  ++   + Y +  D      ++  R+
Sbjct: 374 MGHASISGTQIYAQVTDNK--ISEDMDRL 400


>gi|297581661|ref|ZP_06943583.1| site-specific recombinase [Vibrio cholerae RC385]
 gi|297534068|gb|EFH72907.1| site-specific recombinase [Vibrio cholerae RC385]
          Length = 433

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 65/378 (17%), Positives = 126/378 (33%), Gaps = 43/378 (11%)

Query: 8   PPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMS--ALTGSTPKREYINSPR 65
           P ++ +  T  G+     R+    +  L    ++    AY       G  P  E      
Sbjct: 53  PYWMIRYTTAKGR-----REATLGQFPLMSLADARIAAAYFRKEVRDGIDPLLEKQKIEL 107

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
               T+  L  ++ ++     L    +I +  Y   I    G     ++T + +R  +E 
Sbjct: 108 PDIETVDQLFHDWYRTDLSRRLKHP-KIPYRVYTKDISPVIGIKCIAEVTARDVREVLER 166

Query: 126 RKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV---ERPKRKTEGIRPWTKEDMQ 180
            +    P+ A   L  M+ LF+ A+R +    NP  +    +    ++   R  +KE++ 
Sbjct: 167 IRESNRPTIANDTLMYMKQLFRHAIRLDLTLNNPAAAFTVDDAGGVESSKDRMLSKEEIH 226

Query: 181 -QFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI----KTQKTGT 231
             F  F +     G    LA    L  G+R S+ C A  + +           +  KTG 
Sbjct: 227 YAFSVFHTHINSFGRDNYLACCLFLVLGVRKSELCEAMWREMDLTTGVWDLPKERSKTGV 286

Query: 232 IITVELPDGFMKL---LAMTPIGKETFFINND---KQKMNATQFSIWF-KAKATKAGVNK 284
            I++ LP   +     L +   G    F       +  M     +    K    + G  K
Sbjct: 287 PISIPLPRQAIAWFNELQIRACGSPYVFPARRASHRPHMGPDTLNRAISKLFGREPGRKK 346

Query: 285 ------------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK--GADRIR 330
                       + H +R+   +++A  G   +        K       Y +    +  R
Sbjct: 347 QQPNKMGKLEHFTVHDLRRTFRSLAASLGIAGNVAERCLNHKLKGVEGIYDRHDYFEERR 406

Query: 331 LGIKNSRRISSVVDSDDP 348
           +  +    +   + + +P
Sbjct: 407 IAHQTVADVIEPLVNFEP 424


>gi|291459078|ref|ZP_06598468.1| site-specific recombinase, phage integrase family [Oribacterium sp.
           oral taxon 078 str. F0262]
 gi|291418332|gb|EFE92051.1| site-specific recombinase, phage integrase family [Oribacterium sp.
           oral taxon 078 str. F0262]
          Length = 364

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 55/364 (15%), Positives = 118/364 (32%), Gaps = 59/364 (16%)

Query: 5   LRLPPFVTKERTRHGKIIYYFRKGHGR---RIRLPYPHESTFIPAYMSALTGSTPKREYI 61
             LPPF             +FR    R   R R+ Y ++   +  +   L  S P+    
Sbjct: 22  QELPPFC----------RCFFRAIEPRTSSRTRIAYAYD---LRVFFQFLADSVPELSGK 68

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121
                        I ++  S     L V     +  Y    +R+  +    + + +  + 
Sbjct: 69  P------------IEKFVLS-DIAGLPVLRLEEYMEYLKYRVREQEELPEDRASGRKGKG 115

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
            +E   H   S  + ++S++  +K+  R + ++ +    +  PK +   I    + ++  
Sbjct: 116 KIEILNHEQ-SIKRKISSLKSFYKYLYRDQLISEDTASLLILPKLRDREIIRLDENEVAD 174

Query: 182 FKSFWSEG---------------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226
                  G                +       +L +G+R S+     +Q L  N   I+ 
Sbjct: 175 LLDTAESGEKLTERQQRFHEKTALRDTAILSLMLGTGIRVSECVGLNIQDLDLNSDGIRI 234

Query: 227 -QKTGTIITVELPDGFMKLL----------AMTPIGKETFFINNDKQKMNATQFSIWFKA 275
            +K G  +TV   D   ++L                ++  F++  K+++         K 
Sbjct: 235 HRKGGKEVTVYFSDEVERILSSYLKARKKMPALSSSEDALFLSLQKKRIGVRAVENMVKK 294

Query: 276 KATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLG 332
            A+      + + H +R    T         + +    G + V+   + Y    +  R  
Sbjct: 295 YASAVTPLKHITPHKLRSTYGTNLYRETGDIYLVADVLGHEDVNTTKKHYAALEEERRRS 354

Query: 333 IKNS 336
            +N 
Sbjct: 355 ARNR 358


>gi|291283964|ref|YP_003500782.1| hypothetical protein G2583_3276 [Escherichia coli O55:H7 str.
           CB9615]
 gi|290763837|gb|ADD57798.1| hypothetical protein G2583_3276 [Escherichia coli O55:H7 str.
           CB9615]
          Length = 394

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 55/292 (18%), Positives = 88/292 (30%), Gaps = 36/292 (12%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
           KK   +K  + EY K     +L+ ++   +E     +          ++T   +++ + S
Sbjct: 89  KKTKNIKSYLDEYLKICMNRNLSPSTIGGYEKCISALSELH-KLHVTELTPAVLKNWIAS 147

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE---------RPKRKTEGIRPWTK 176
           RK    +    L+ +R     AV    + INP   V          +P      + P+  
Sbjct: 148 RKTKLKTIRNNLSFLRSAIDEAVTDGLLTINPVTLVSASRYHVVDSKPNADDYEVDPFAP 207

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-------------NNIFS 223
            +               L F F   +GLR S+ C      +                I  
Sbjct: 208 AETSAIYQHCKYQEWQNL-FRFAFNTGLRSSELCALRWTDIDFIGNTAHIQAASVVGILK 266

Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKET---FFINNDKQ--KMNATQFSIWFKAKA- 277
               K GT   V+L    +  L            F  ++ K      A   +I  KA   
Sbjct: 267 GTKTKAGTR-KVKLNSEALAALQAQKQFTFMKSEFIFSDPKTKEPW-ANADAIRKKAWVP 324

Query: 278 --TKAGVNKS-AHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKG 325
              KAGV     +  R   AT     G     L    G K  +     Y + 
Sbjct: 325 TLKKAGVRYRNPYQTRHTFATRHISQGVNLFWLAGQMGHKGPEMLFRHYGRY 376


>gi|167750085|ref|ZP_02422212.1| hypothetical protein EUBSIR_01053 [Eubacterium siraeum DSM 15702]
 gi|167656958|gb|EDS01088.1| hypothetical protein EUBSIR_01053 [Eubacterium siraeum DSM 15702]
          Length = 398

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 49/329 (14%), Positives = 95/329 (28%), Gaps = 51/329 (15%)

Query: 45  PAYMSALTGSTPKREYINSPRKKPTT---LKWLISEYRKSAHWGSLAVNSRISFESYFD- 100
            AY   +           +  KKP +   +   +  Y K     ++  ++  S+    + 
Sbjct: 50  KAYREVVQAFEQSYAEQIAQNKKPASDIPIYDYMCAYYKKIE-KNIQKSTAESYRGMING 108

Query: 101 QIIRKS---GDFDYRKITTKHIRSGVESRKHTPSSAIQFL---TSMRVLFKWAVRQEYVA 154
           +I R      D     IT K I    +    +   A   +   T +   FK A +   + 
Sbjct: 109 RIRRYFTARKDLTVGSITAKDIEDFYDWMFESHVVANTVIHYHTVLHSAFKRAFKDGLIE 168

Query: 155 INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGV 214
            NP   ++RPK+       +++E++         G     A       GLR S++  A  
Sbjct: 169 SNPFDRIDRPKKNKFTGDNYSEEELIAMLGLI-RGDIIYPAVMLAGGLGLRRSEALGARW 227

Query: 215 QHLQ---------NNIFSIKTQKT------------GTIITVELPDGFMKLLAMTPIG-- 251
             +            I   K                 +  T+ LPD   ++L        
Sbjct: 228 SRVDWEKKTILLDTKIIEYKENGKVIVEPVEEMKNKSSRRTLPLPDPVYEMLCEEREKQD 287

Query: 252 --------------KETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATI 296
                          +   ++     +   + +  F     + G+ K   H +R   A+I
Sbjct: 288 LYRRMFKGSYNRKYDDYICVDQLGGLIRPNRVTQRFADLIRQYGLRKIRFHDLRHTFASI 347

Query: 297 SADAGATAHELMATYGWKTVDQAE-TYTK 324
             +       +    G   +      Y  
Sbjct: 348 LINQDVPLLNVSTFLGHSDLSTTANIYAH 376


>gi|160887405|ref|ZP_02068408.1| hypothetical protein BACOVA_05424 [Bacteroides ovatus ATCC 8483]
 gi|156107816|gb|EDO09561.1| hypothetical protein BACOVA_05424 [Bacteroides ovatus ATCC 8483]
          Length = 422

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 39/231 (16%), Positives = 73/231 (31%), Gaps = 27/231 (11%)

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVER----PKRKTEGIRPWTKEDMQQFKS---FWSEGS 190
             +  +F  AV+   +  NP   +E+    PK KT   +  T +++++F +        +
Sbjct: 177 QRIVTVFNKAVKFGKLKANPFYQLEKSDIFPKPKTSHKQYLTPDELKRFMASDERSPGVA 236

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI----FSIKTQKTGTIITVELPDGFMKLLA 246
           + + AF F   +GLR SD        ++ N       I  +KT  +  V + +  +  + 
Sbjct: 237 ETQRAFGFACLTGLRISDIKALRWSDIKRNEETNTLVIIQKKTKALNAVPIGNTALSWMP 296

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATA 304
                   F +                K  A K G+ K  S H  R     +        
Sbjct: 297 PKGNDDFVFHL------PAKANVDAALKRIAKKVGIEKNISFHCARHTFGILVQAVTGNI 350

Query: 305 HELMATYGWKTVDQAETY--------TKGADRIRLGIKNSRRISSVVDSDD 347
                  G K++     Y         K  D  +   +  ++         
Sbjct: 351 ETTKKLMGHKSLKSTSIYADVLTNEKVKAVDNTKKAFRGRKQREENKQIPR 401


>gi|44004569|ref|NP_982238.1| integrase/recombinase, putative [Bacillus cereus ATCC 10987]
 gi|208702025|ref|YP_002267328.1| integrase/recombinase, putative [Bacillus cereus H3081.97]
 gi|217956830|ref|YP_002335924.1| integrase/recombinase, putative [Bacillus cereus AH187]
 gi|42741635|gb|AAS45080.1| integrase/recombinase, putative [Bacillus cereus ATCC 10987]
 gi|208657880|gb|ACI30250.1| integrase/recombinase, putative [Bacillus cereus H3081.97]
 gi|217068527|gb|ACJ82775.1| putative integrase/recombinase [Bacillus cereus AH187]
          Length = 347

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/277 (13%), Positives = 79/277 (28%), Gaps = 31/277 (11%)

Query: 85  GSLAVNSRISF----ESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSM 140
              +  ++  +      +   I    G           I     S+K+  ++  +  T +
Sbjct: 59  KKRSERTKQQYLHDLSHFLRYIKETIGTIQELSHNDMEIYFYQLSKKYAATTLRRKKTVV 118

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEG--IRPWTKEDM-QQFKSFWSEGSQPRLAFE 197
           +   K+      ++ N    +++   K E    R    E++ +   +           F 
Sbjct: 119 QQFLKYVYDNNGLSDNFSSRLKKVSVKKEELVNRDLFPEEVNEILDTLKKTNFFMYSLFF 178

Query: 198 FLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIIT-VELPDGFMKLLAMT---- 248
            L  +GLR  +   A    L      N++ ++    G     V + +  +  L       
Sbjct: 179 LLTTTGLRIEEVANAKWADLAFHPSLNVYLLRVVGKGNKTREVRIFEDVLNDLCRLRQLR 238

Query: 249 -------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--------KSAHGVRKFS 293
                        F    D     A   S +   K  +  +          + H  R F 
Sbjct: 239 KQTSELDASSSSAFLPKADGSHYRADYLSKYVAEKIEETNLPFLRYRKDRITPHTCRHFF 298

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
           A      G    ++    G +++   E Y +   R +
Sbjct: 299 ANHLMGKGVELKKIRDYLGHESIMTTERYLRERTRRQ 335


>gi|88856274|ref|ZP_01130934.1| integrase [marine actinobacterium PHSC20C1]
 gi|88814593|gb|EAR24455.1| integrase [marine actinobacterium PHSC20C1]
          Length = 402

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 52/333 (15%), Positives = 108/333 (32%), Gaps = 46/333 (13%)

Query: 46  AYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK 105
            +  A   +    +   +    P   KW+++  + +     LA  ++  + S+  +++  
Sbjct: 35  DWNVASASADGAAKAGRTETLGPYAEKWVLNRVKTNGE--PLAPLTKKDYLSFIRRLLPP 92

Query: 106 SGDFDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163
             +     IT   +R   E+ + T   + + +  T +R + + AV    + ++PC  V  
Sbjct: 93  LSEMRIAMITPTDVREWNEALRATGKITQSARVYTVLRSIMEQAVDDGIIQVSPCK-VRG 151

Query: 164 PKRKTEGIR--PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ------ 215
                 GI   P T  +++          + +       ++ LR  +      +      
Sbjct: 152 AGNAVTGIEVKPPTAAELETIMKVIDP--RFKTMIVLGAWAALRFGEVTELRRKDILIVE 209

Query: 216 --------------------HLQNNIFSIKTQKTGTIITVELPDG------FMKLLAMTP 249
                               H+    F ++  K+   + +              L     
Sbjct: 210 EGTAKAPRTTIYVDVSRGVTHIPGEGFILRPPKSRAGVRIVALPPHVNDIVLEHLRDRVG 269

Query: 250 IGKETFF---INNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAH 305
              E+     ++     + A+ ++ ++      AG  +   H +R F AT  A  GAT  
Sbjct: 270 EDPESLIYEAMSGGGHHLAASTWTDYWYPAREAAGRGDLHFHALRHFGATAYALTGATIR 329

Query: 306 ELMATYGWKTVDQAETYTKGADR-IRLGIKNSR 337
           EL    G  T + A  Y     R   L  K S 
Sbjct: 330 ELQDRLGHTTPNVAMRYQHTTGRGAELAAKMSE 362


>gi|110635731|ref|YP_675939.1| site-specific tyrosine recombinase XerC [Mesorhizobium sp. BNC1]
 gi|110286715|gb|ABG64774.1| tyrosine recombinase XerC subunit [Chelativorans sp. BNC1]
          Length = 313

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 39/276 (14%), Positives = 86/276 (31%), Gaps = 30/276 (10%)

Query: 85  GSLAVNSRISFESYFDQIIRKS--------GDFDYRKITTKHIRSGVESRKHTPSSAIQF 136
             LA  +  ++E    Q ++          G  D   +    +R+ + +R+   + A   
Sbjct: 28  RRLAPLTLDAYERDTRQFLQFLTRHGGGAPGLCDIAALRPADLRAFLAARRIDGAGARTL 87

Query: 137 ---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ-------QFKSFW 186
              L  +R   ++  ++         ++  P+      +P T  D +       Q     
Sbjct: 88  GRGLAGVRSFLRFLEKRGLANAAGAGALRAPRAPKGLPKPLTAADAKRVTSGEGQLAEEP 147

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAG---VQHLQNNIFSIKTQKTGTIITVELP---DG 240
              ++    F  L  SGLR  ++       +  L++    +  + + T +   LP   + 
Sbjct: 148 WIAARNAAVFALLYGSGLRIGEALGLKGVDIAALRSGSLRVTGKGSKTRVVPVLPVVGEA 207

Query: 241 FMKLLAMTP---IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSAT 295
             +   + P     +   F       +         +   +   +    + H +R   AT
Sbjct: 208 VAEYQRLCPYHLEAEAPLFRGARGGALQPAIIQREMQKMRSALNLPDTATPHALRHSFAT 267

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
                G     +    G  ++   + YT   D  RL
Sbjct: 268 HLLGRGGDLRAIQELLGHASLSTTQVYT-AVDTSRL 302


>gi|330502974|ref|YP_004379843.1| integrase family protein [Pseudomonas mendocina NK-01]
 gi|328917260|gb|AEB58091.1| integrase family protein [Pseudomonas mendocina NK-01]
          Length = 458

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 45/332 (13%), Positives = 90/332 (27%), Gaps = 73/332 (21%)

Query: 50  ALTGSTPKREYINSPRKKPT-TLKWLISEY----RKSAHWGSLAVNSRISFESYFDQIIR 104
           A+T    +R+   +P +    TL  L   Y    ++S  W ++     +  E        
Sbjct: 97  AITAHPARRQTKAAPSRAEGPTLASLSKLYVEEGKRSGAWRTVNA---LDVERALRDFFD 153

Query: 105 KSGDFDYRKITTKHIR-----------------------------SGVESRKHTPSSAIQ 135
             GD        +  R                             S ++ +  T  +   
Sbjct: 154 LMGDMPVSAFDVEQARTLKERLTRCPQYFVQRPEFKGKTLRQVIDSAMDYKTITAVTVNN 213

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR- 193
            L  +   F W     Y+  NP   ++       +    +   D++   +  S  ++ R 
Sbjct: 214 RLRKLTSFFHWCKANGYIEQNPMTGMKAMTGPAKDARLSFDPCDLKALLNLESLSNEARK 273

Query: 194 ------LAFEFLLYSGLRCSDSCRAGVQHL-----------QNNIFSIKTQKTGTIITVE 236
                 L      ++G R  + C+     +            +     K +   +   + 
Sbjct: 274 HPWRYWLPL-LARFTGARLEELCQLYTDDITSIQSIPCLRIDDKFIGQKLKNQSSRRILP 332

Query: 237 LPDGFMKLLA------MTPIGKETFFINNDKQKMNATQFS----IWFKAKATKAGVN--- 283
           +    + L        +   G    F N +       +       WF     K G++   
Sbjct: 333 IHPELLNLGLMEYVQTIRGAGHCRLFPNLE---ATRDKLGHAPSKWFSRYKAKVGIDDPR 389

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKT 315
           KS H  R        +AG     +    G + 
Sbjct: 390 KSFHSFRHTFIDDLREAGVQDSLIKRMVGHED 421


>gi|258650728|ref|YP_003199884.1| integrase [Nakamurella multipartita DSM 44233]
 gi|258553953|gb|ACV76895.1| integrase family protein [Nakamurella multipartita DSM 44233]
          Length = 371

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 45/331 (13%), Positives = 105/331 (31%), Gaps = 49/331 (14%)

Query: 20  KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYR 79
           ++ +Y R     + +L   ++        +A     P             T++  + E+ 
Sbjct: 35  RVSHYVRTKADAKAKLREMND-------RAAKNMPAPPPSL---------TVEAYLGEWL 78

Query: 80  KSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE---SRKHTPSSAIQ 135
                  +  ++ +++ES     I+ + G     +++ + +R  ++          +   
Sbjct: 79  THMK-QHVRRSTWVAYESNARLHIVPRIGRKKLSQLSVRDVRLMIDGLRKDGKGKRTVQY 137

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195
              ++R   + A R+E V  N    V   +       P +  + ++  +   +  +    
Sbjct: 138 VHATLRAALEHAYREELVTRNVAKMVRVERPTPTPKEPLSVAEARRLLTATRD-DEDHAL 196

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQ---------------NNIFSIKTQKTG-TIITVELPD 239
           +  +L  GLR S+ C     ++                +        KT  +  TV LP 
Sbjct: 197 WVVMLLLGLRRSEVCGLRWDNVDLENRTLSVTHSVQRVDGKLRELPTKTRRSTRTVPLPA 256

Query: 240 GFMKLL-----AMTPIGK-----ETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA-HG 288
              + L     AM P  +        F       M     +  +   A + G+ +   H 
Sbjct: 257 MVHQALVTHRAAMMPTSQYLPEPVYVFGTKIGTPMEPRNLTRRWVTLAERQGIRRVPLHA 316

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQA 319
           +R    ++    G     +M   G   ++  
Sbjct: 317 LRHSCVSLLLAQGVHPRTVMEIVGHSAIEMT 347


>gi|170768707|ref|ZP_02903160.1| integrase [Escherichia albertii TW07627]
 gi|170122255|gb|EDS91186.1| integrase [Escherichia albertii TW07627]
          Length = 395

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 45/248 (18%), Positives = 87/248 (35%), Gaps = 18/248 (7%)

Query: 92  RISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQE 151
           +++   + + I    G+    + T +   S  +S      +  Q L  M+  F++   + 
Sbjct: 120 KVNRRDFNNHIAPVLGNKVVDQTTKEQWLSLFDSMGRRVVTG-QMLGLMQRTFRFCSNRG 178

Query: 152 YVAINPCLSVERPKRK---TEGIRPWTKEDMQQFKSFWSE-GSQPRLAFEFLLYSGLRCS 207
            +  NP  ++ R           R  + E+++   S   E   +  +  +FLL +G R +
Sbjct: 179 VINTNPVETLRRSDVGLTAASKDRILSDEEIKIVWSTLPELARRQMMIVKFLLMTGCRSA 238

Query: 208 DSCRAGVQHLQNNIFSIK----TQKTGTIITVELPDG---FMKLLAMTPIGKETFFINND 260
           +   A  +    N  +        KTG  +   LP      M+ +  T + K    ++  
Sbjct: 239 EIRTAKWEWFDFNEGTWTIPASDYKTGKSVRRALPVAAVRMMESIKATSVSKHVVTLSRY 298

Query: 261 KQK---MNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWK 314
           K         Q +I   +    A       S H +R+  AT  ++ GA  H +    G  
Sbjct: 299 KGPEDDRPPQQPNIALLSAQIVAKTGMKTWSLHDLRRTVATRLSELGAPPHVIGKLLGHH 358

Query: 315 TVDQAETY 322
                  Y
Sbjct: 359 MSGVMARY 366


>gi|117623597|ref|YP_852510.1| Rac prophage; integrase [Escherichia coli APEC O1]
 gi|115512721|gb|ABJ00796.1| Rac prophage; integrase [Escherichia coli APEC O1]
          Length = 411

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 44/314 (14%), Positives = 87/314 (27%), Gaps = 65/314 (20%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHIRSGVE---- 124
           T   L   + K      L  N+    +S    +            I    I +       
Sbjct: 82  TFGELCDIWTKIKE-TELTTNTMKKTKSQLKTLRIIICESTPISHIRYSDILNYRNELLH 140

Query: 125 ------------SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
                        +  T  +   ++  +  L ++A +  +++  P   V++ +R      
Sbjct: 141 GETLYLDNPRSNKKGRTVRTVDNYIALLCSLLRFAYQSGFISTKPFEGVKKLQRNRIKPD 200

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
           P +K +         +G    L  +F +YSGLR  +      + +      +  ++  TI
Sbjct: 201 PLSKTEFNALMES-EKGQSQNLW-KFAVYSGLRHGELAALAWEDVDFEKGIVNVRRNLTI 258

Query: 233 ITVELPDG----------FMKLLAMTP-----IGKE-----TFFINNDKQK--------- 263
           + +  P                L          G       TF+     +          
Sbjct: 259 LDMFGPPKTNAGIRTVTLLQPALEALKEQYKLTGHHRKSEITFYHREYGRTEKQKLHFVF 318

Query: 264 ------------MNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMA 309
                        + +     + A   +AG+ +    H  R   A     AGA    + +
Sbjct: 319 MPRMCNGKQKPYYSVSSLGARWNAAVKRAGIRRRNPYHT-RHTFACWLLTAGANPAFIAS 377

Query: 310 TYGWKTVDQA-ETY 322
             G +T     E Y
Sbjct: 378 QMGHETAQMVYEIY 391


>gi|293433426|ref|ZP_06661854.1| prophage lambda integrase [Escherichia coli B088]
 gi|291324245|gb|EFE63667.1| prophage lambda integrase [Escherichia coli B088]
          Length = 376

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 47/296 (15%), Positives = 92/296 (31%), Gaps = 35/296 (11%)

Query: 58  REYINSPRKKPTTLKWLISEYRKSAH----WGSLAVNSRISFESYFDQIIRKSGDFDYRK 113
            + I + + K  T    +  Y+         G + +N+          +  ++G      
Sbjct: 71  SDRIATSKGKAITTSTWLDRYQAIQDDRLESGDIKLNTYKQKAKPVSLLRERAGMKLISS 130

Query: 114 ITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAI--NPCLSVERPKRKTE 169
           +  + I   ++       P  A    + +  +FK A     V    NP  + ++P+RK  
Sbjct: 131 VDVRDIAQLLDEYITAGQPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPAQATKQPRRKIT 190

Query: 170 GIRPWTKEDMQQFKSFWSE-GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
             R  + E+ Q+              A    L +G R  D  R     + ++   +  +K
Sbjct: 191 RQR-LSLEEWQKIFDIADASHRYMGNAMLLALVTGQRLGDISRMKFSDIWDDHLHVIQEK 249

Query: 229 TGTIITVELPDGFMKL------------LAMTPIGKETFFINN----DKQKMNATQFSIW 272
           TG+ I + L      +                      FF          ++ +   +  
Sbjct: 250 TGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSPYLVHFFRTTSQAERGAQVKSNTLTTN 309

Query: 273 FKAKATKAGVN------KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           F      A ++       + H  R  S  +  + G    +L    G KT  Q + Y
Sbjct: 310 FSRARDLAEIDWGNGSPATFHEQRSLSERLYKEQGVDTQKL---LGHKTQQQTDRY 362


>gi|171779406|ref|ZP_02920370.1| hypothetical protein STRINF_01251 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282023|gb|EDT47454.1| hypothetical protein STRINF_01251 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 311

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/276 (13%), Positives = 91/276 (32%), Gaps = 34/276 (12%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HT 129
           K  I  Y++    G++   +   +   +  + +       + +     +  +      H 
Sbjct: 18  KQWIMVYKE----GAIRPITMQKYYMAYRWLEKLVPKLQIQHLDRISYQKILNQYASVHE 73

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLS--VERPKRKTEGIRPWTKEDMQQFKSFWS 187
             + + F   ++     AV +  +  +P     ++  + + +  +   + ++ +      
Sbjct: 74  RQTTMDFHHHLKCAILDAVDEGLIPRDPTRKAIIKGKQPREKKPKFLNQYELHKLLDDLD 133

Query: 188 EGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSIKTQKT---------------G 230
             S+  + +  LL   +GLR S++     +       ++   KT                
Sbjct: 134 LKSEINMDWLILLIAKTGLRFSEALALTPKDFDLTRQTLSVSKTWNYKENGGFLPTKNES 193

Query: 231 TIITVELP----DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-S 285
           ++  + +       F +LL   P  K  F     K K+  +  +         AGV   S
Sbjct: 194 SVRKIPIDWQTVIQFAELLKSLPEDKPIFV----KGKVYNSTVNDRLARHCKNAGVPIIS 249

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
            HG+R   A++   AG +   +    G   +   + 
Sbjct: 250 IHGLRHTHASLLLFAGVSIASVARRLGHSNMTTTQK 285


>gi|284921220|emb|CBG34286.1| phage integrase [Escherichia coli 042]
          Length = 411

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 44/314 (14%), Positives = 87/314 (27%), Gaps = 65/314 (20%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHIRSGVE---- 124
           T   L   + K      L  N+    +S    +            I    I +       
Sbjct: 82  TFGELCDIWTKIKE-TELTTNTMKKTKSQLKTLRIIICESTPISHIRYSDILNYRNELLH 140

Query: 125 ------------SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
                        +  T  +   ++  +  L ++A +  +++  P   V++ +R      
Sbjct: 141 GETLYLDNPRSNKKGRTVRTVDNYIALLCSLLRFAYQSGFISTKPFEGVKKLQRNRIKPD 200

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
           P +K +         +G    L  +F +YSGLR  +      + +      +  ++  TI
Sbjct: 201 PLSKTEFNALMES-EKGQSQNLW-KFAVYSGLRHGELAALAWEDVDFEKGIVNVRRNLTI 258

Query: 233 ITVELPDG----------FMKLLAMTP-----IGKE-----TFFINNDKQK--------- 263
           + +  P                L          G       TF+     +          
Sbjct: 259 LDMFGPPKTNAGIRTVTLLQPALEALKEQYKLTGHHRKSEITFYHREYGRTEKHKLHFVF 318

Query: 264 ------------MNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMA 309
                        + +     + A   +AG+ +    H  R   A     AGA    + +
Sbjct: 319 MPRMCNGKQKPYYSVSSLGARWNAAVKRAGIRRRNPYHT-RHTFACWLLTAGANPAFIAS 377

Query: 310 TYGWKTVDQA-ETY 322
             G +T     E Y
Sbjct: 378 QMGHETAQMVYEIY 391


>gi|302866310|ref|YP_003834947.1| integrase family protein [Micromonospora aurantiaca ATCC 27029]
 gi|302569169|gb|ADL45371.1| integrase family protein [Micromonospora aurantiaca ATCC 27029]
          Length = 378

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/273 (15%), Positives = 76/273 (27%), Gaps = 34/273 (12%)

Query: 85  GSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMR 141
              +  +  ++ S+    I+   G      I  +HI++   +      P S    +  + 
Sbjct: 71  HQASPATWAAYRSHLRLHILPTLGPLPLVDIRRQHIKTLAVALGKRLAPRSVADVIMVLS 130

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201
           ++ + AV    +  NPC  +  PK         T E +    +  +  S   L      Y
Sbjct: 131 MVLQEAVEDRRIPFNPCRGIRIPKGIRAERPHATAEQVAAIVARQARPS-DGLMVLTAAY 189

Query: 202 SGLRCSDSCRAGVQHLQ------------------NNIFSIKTQKTGTII-TVELPDGFM 242
           +G+R  +       +L                        +   KT   +  + LP    
Sbjct: 190 TGMRWGELAGLHRDNLDLTLGSIYVHPDTGALHEVEGKLYLGPPKTNDSVRHIRLPRFLT 249

Query: 243 KLLAMTPIG--KETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA---------HGVRK 291
            LLA        +T F          + F+      A   G  +           H +R 
Sbjct: 250 NLLATHLAEHLHDTVFPGARGYHQRRSNFNRRAWTPALTGGPQRDIPPILPGMHFHDLRH 309

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK 324
              T   + G          G +       Y+ 
Sbjct: 310 THKTWLIEDGIPEIAQARRLGHRLAGVRGIYSH 342


>gi|227833852|ref|YP_002835559.1| putative phage-related integrase [Corynebacterium aurimucosum ATCC
           700975]
 gi|227454868|gb|ACP33621.1| putative phage-related integrase [Corynebacterium aurimucosum ATCC
           700975]
          Length = 422

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 42/331 (12%), Positives = 99/331 (29%), Gaps = 64/331 (19%)

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITT 116
           +        +  T++  ++ + ++    + + N+  + +SY    II   G++    +  
Sbjct: 57  KLKKGRSTPEEITVETHVTRWLETTAAETFSPNNLRNHKSYATKYIIPTLGEYKLSDVGA 116

Query: 117 KHIRSGVESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
             +R   ++ +    +  +     +S+ V  + AV++  +  NPC  V RP+  ++    
Sbjct: 117 DEVRELDKAVRDAHVSSRTVQMVRSSLSVCMEDAVKRGLIERNPCSQVPRPRAVSKKRTS 176

Query: 174 WTKEDMQQFKSF-WSEGSQPRLAFEFLLYSGLRCSDSCRAG------------------- 213
            T ++ +         G      +   L+ G R  +                        
Sbjct: 177 LTADEARHLIVHSAQVGDPFATLWAAFLFLGPRKGELLGLQRNKVNFSPAGCTAELDRAL 236

Query: 214 ----VQHLQN-----------------------------NIFSIKTQKTGTIITV----- 235
                 H +                                  +   KT + + +     
Sbjct: 237 VEVSWAHGEGCRCIDGVRPSKCPTRGLALPPGYDFEPLWGNLILAPPKTSSSVRLVHVPA 296

Query: 236 ELPDGFMKLLAMTPIGK-ETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFS 293
            L     + +   P  K    +++     +        +K+    AG+     H  R  +
Sbjct: 297 PLDAMLWQYVQAAPPNKWGLMWVSERGLPLRPKVALARWKSALKAAGLPVVDLHTARHTA 356

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324
           A++ A+ G     +    G  TVD    Y  
Sbjct: 357 ASLLAECGVPPQVIGVILGQSTVDTTLGYVH 387


>gi|198276144|ref|ZP_03208675.1| hypothetical protein BACPLE_02333 [Bacteroides plebeius DSM 17135]
 gi|198270956|gb|EDY95226.1| hypothetical protein BACPLE_02333 [Bacteroides plebeius DSM 17135]
          Length = 387

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/262 (14%), Positives = 83/262 (31%), Gaps = 32/262 (12%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI---QFLTSMR 141
            S    ++ +  +  D +       ++  IT   +    +  +          + +  +R
Sbjct: 119 SSRKDTTKKNLLTTLDLLNHFRSSIEFEDITYSFLLEFEDFMRQKMYETNTIAKHMRQLR 178

Query: 142 VLFKWAVRQEYV--AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-----SEGSQPRL 194
                A+++ Y+     P     + K           E++++ +                
Sbjct: 179 TFVNEAIKRGYIQPEDYPFRKY-QIKTTQSKHSFLLPEEIRKLEKLELPLCSKSLIHSLK 237

Query: 195 AFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250
           AF F  Y+G+R SD       ++           +T KT T +++ L         +   
Sbjct: 238 AFLFCCYTGVRYSDFVHLNENNIVTIKGEKWLIFRTVKTNTEVSIPL--------YLLFQ 289

Query: 251 GKETFFINNDKQK-------MNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301
           GK    +    +         + +  +   K     A + K  S H  R  +AT+    G
Sbjct: 290 GKALRLLQEYNRNVNDFFHLKSNSSVNKDLKKIGMLAKIEKHFSFHTARHTNATLLIYNG 349

Query: 302 ATAHELMATYGWKTVDQAETYT 323
           A    +    G ++V   + Y+
Sbjct: 350 AQITTVQKLLGHQSVKTTQGYS 371


>gi|145629898|ref|ZP_01785689.1| prophage integrase [Haemophilus influenzae 22.1-21]
 gi|148827585|ref|YP_001292338.1| hypothetical protein CGSHiGG_05060 [Haemophilus influenzae PittGG]
 gi|144977725|gb|EDJ87675.1| prophage integrase [Haemophilus influenzae 22.1-21]
 gi|148718827|gb|ABQ99954.1| hypothetical protein CGSHiGG_05060 [Haemophilus influenzae PittGG]
          Length = 293

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/239 (15%), Positives = 90/239 (37%), Gaps = 15/239 (6%)

Query: 98  YFDQIIRKSGDFDYRKITTKHIRSG------VESRKHTPSSAIQFLTSMRVLFKWAVRQE 151
           +      + G+     +T++ I++          +  +P++  ++ +S+      A +  
Sbjct: 35  HAKYWRDEIGNKLLSSLTSEDIQNAIPTHVVRTGKILSPATQNRYRSSIMRAINLAKQAG 94

Query: 152 YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCR 211
           ++ + P   + +     + IR  T+++ ++     +      +  +F L +G R ++   
Sbjct: 95  WIDVVP--YIAKNSEPKKRIRWITEKEAERLLDSLNLNWMKDVC-QFALLTGARMTEILS 151

Query: 212 AGVQHLQ-NNIFSIKTQ---KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT 267
                +   N  +I T    K+G   ++ L D  + L+      + + ++ +        
Sbjct: 152 MTWDKINFANKMAIVTGDIAKSGRGRSLPLSDDAINLIKERMKYQVSPYVFHSGTGKLRD 211

Query: 268 QFSIW-FKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             S   FK    +A + N   H +R   A+     G     L    GW+T++  + Y  
Sbjct: 212 DISRRDFKRALQRANIKNFRFHDLRHTWASWHIQRGTPLMVLKELGGWETIEMVQKYAH 270


>gi|315637375|ref|ZP_07892590.1| phage integrase [Arcobacter butzleri JV22]
 gi|315478349|gb|EFU69067.1| phage integrase [Arcobacter butzleri JV22]
          Length = 209

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 72/191 (37%), Gaps = 6/191 (3%)

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199
           ++ L K+A + +Y+  +    ++  +      R  TK++++    +  +     L F+  
Sbjct: 4   LKTLIKYAFKNDYIKNDFSKYIQLLEIDNARERFLTKDEIKLLFDYSKDDETLYLLFKLA 63

Query: 200 LYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG---KET 254
           L +G R +       + +   +++ ++K  K  +     L D    LL          + 
Sbjct: 64  LNTGARLATLLNIHKKDIDFTHDLLTLKDFKNNSTYKAFLTDDLKALLEKRVNSLKPNDK 123

Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGW 313
            FI+N ++++ A    ++ K        NK   H +R   A+  A  G     +      
Sbjct: 124 LFISNPERRLRAKLDELFNKDIDDNDRKNKIVFHSLRHTFASHLAINGTPIFTIQKLMNH 183

Query: 314 KTVDQAETYTK 324
           K +     Y K
Sbjct: 184 KDIRMTLRYAK 194


>gi|308186453|ref|YP_003930584.1| Integrase [Pantoea vagans C9-1]
 gi|308056963|gb|ADO09135.1| Integrase [Pantoea vagans C9-1]
          Length = 381

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 49/356 (13%), Positives = 115/356 (32%), Gaps = 46/356 (12%)

Query: 9   PFVTKERT-RHGKIIYYFRKGHGRRIRLPYPHEST--FIPAYMSALTGSTPKREYIN--- 62
           P +  +   R G++ + ++     +      +      +    +A+      R+ ++   
Sbjct: 13  PNLYSKLDKRTGRVYWQYKHPITGKFHSLGTNADEAKQVANEANAIIAEQRTRQILSVNE 72

Query: 63  -----SPRKKPTTLKWLISEYRKSAHWG----SLAVNSRISFESYFDQIIRKSGDFDYRK 113
                   ++  T+   +  Y +          + +NS    +   + + R  G    + 
Sbjct: 73  KIAKMRESREFITVTTWLDRYLEIQQERLESGEIKINSVKQKKKPVELLRRNCGMMYLKD 132

Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMRV--LFKWAVRQEYVAI--NPCLSVERPKRKTE 169
           +    +   V++ K    + +  +  M +  +FK A    +V    NP  + ++P R   
Sbjct: 133 VGALEVAEIVDAVKAEGHNRMAQVVRMAIIDVFKEAQHAGHVPPGYNPAQATKQP-RNRV 191

Query: 170 GIRPWTKEDMQQ-FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
             +  + ++ Q  F +        + A    L +G R  D        + +++  +  +K
Sbjct: 192 VRQRLSLDEWQAIFSAAEDHPPYLQCAMLLALVTGQRIGDISNMQFSDIWDDMLHVTQEK 251

Query: 229 TGTIITVELPDGFMKL---LAMTPIGKETFFINN-------------DKQKMNATQFSIW 272
           TG  + + L    M +   L           ++                 K++A+  +  
Sbjct: 252 TGCRVAIPLSLRCMAIGISLREVIAQCRDAVVSKYLVHFRRSTSQAVRGDKVSASSITTT 311

Query: 273 FKAKATKAGVNK------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           FK      G+        + H  R  S  +    G    +L    G K+    E Y
Sbjct: 312 FKKARNHCGLTWTEGTAPTFHEQRSLSERLYRAQGIDTQKL---LGHKSQAMTEKY 364


>gi|227115381|ref|ZP_03829037.1| prophage integrase [Pectobacterium carotovorum subsp. brasiliensis
           PBR1692]
          Length = 383

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 40/274 (14%), Positives = 96/274 (35%), Gaps = 20/274 (7%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH 128
           T   + +++ +      LA N+        +  +    G     ++T +H  + +E  + 
Sbjct: 73  TFAKVSADWYELKKSQPLAENTIKDIWRSLEKYMFPFIGTLPITQLTARHFITALEPIQA 132

Query: 129 TPS--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP---KRKTEGIRPWTKED--MQQ 181
           +    +  + +  +  +  +AV    +  NP   + +      KT       +    + +
Sbjct: 133 SGKLETVKRVIQRINEVMDYAVNSGLIPANPAAKIRKAFQTPVKTHMPTIRPEALPGLMK 192

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIIT--VEL 237
             S  S   Q RL  E+ L +  R +++       +   +N ++I   +        + L
Sbjct: 193 TLSVASIELQTRLLIEWQLLTVTRPAEAAETRWSEINLADNTWTIPAGRMKMRRDHIIPL 252

Query: 238 PDGFMKLLAMTPI---GKETFFINN--DKQKMNATQFSIWFKAKATKAGVNKSAHGVRKF 292
               + +L         +E  F ++   KQ MN+   +   +    K  +   +HG+R  
Sbjct: 253 SPQALAILDAMKPISGHREYLFPSSKDPKQPMNSQTANAALRRMGYKGVL--VSHGLRAI 310

Query: 293 SATISADAGATAHELMATYGWKTVDQAET-YTKG 325
            +T + + G     + A       ++    Y + 
Sbjct: 311 FSTAANEEGFPPDVIEAALAHVDTNEVRRAYNRS 344


>gi|237731121|ref|ZP_04561602.1| prophage lambda integrase [Citrobacter sp. 30_2]
 gi|226906660|gb|EEH92578.1| prophage lambda integrase [Citrobacter sp. 30_2]
          Length = 376

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 58/344 (16%), Positives = 105/344 (30%), Gaps = 47/344 (13%)

Query: 20  KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY---------INSPRKKPTT 70
           K+ + ++     +       E+        A      +R             S  K  TT
Sbjct: 25  KVYWRYKHPVTGKFHSLGTDEAEAKAIATEANARLAEQRSRQVLAISDRIATSKGKAITT 84

Query: 71  LKWLISEYRKSAHWG----SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
           + WL   Y K          +  N+          +  ++G      +  + I   +E  
Sbjct: 85  VTWL-ERYWKIQEERLASGDIKENTYKQKAKPVALLKERAGMKLISSVDVRDIAQILEEY 143

Query: 127 --KHTPSSAIQFLTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPWTKEDMQQF 182
                P  A    + +  +FK A     V    NP L+ ++P+RK    R  + E+ Q+ 
Sbjct: 144 LSAGQPRMAQVVRSVLIDVFKEAQHYGEVPPGHNPALATKQPRRKITRQR-LSLEEWQKI 202

Query: 183 KSFWSEGSQ-PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241
                +  Q    A    L +G R  D  +     + ++   I+ +KTG+ I + L    
Sbjct: 203 FDIADKKQQYMGNAMLLALVTGQRLGDISKMKFSDIWDDHLHIEQEKTGSKIAIPLSLRL 262

Query: 242 MKL------------LAMTPIGKETFFINN----DKQKMNATQFSIWFKAKATKA----- 280
             +                      FF          ++ +   ++ F      A     
Sbjct: 263 NSINWSLRDVVARCRDYAVSPYLVHFFRTTSQAERGTQVKSNTLTMNFSKARDLARIDWG 322

Query: 281 -GVNKSAHGVRKFSATISADA-GATAHELMATYGWKTVDQAETY 322
            G   + H  R   A    +A G    +L    G K+ +Q   Y
Sbjct: 323 NGTPATFHEQR-SLAERLYEAQGVDTQKL---LGHKSPNQTAGY 362


>gi|206601439|gb|EDZ37930.1| Integrase [Leptospirillum sp. Group II '5-way CG']
          Length = 316

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 52/320 (16%), Positives = 108/320 (33%), Gaps = 50/320 (15%)

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHI 119
           ++    + TTL   +  Y +               +   D   +   G      I +  +
Sbjct: 7   VSRKEAENTTLAEALDRYEQ--EISQKKKGYSKEKDK-IDHWRKSFLGSLFLGTIRSSDL 63

Query: 120 RSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQ----EYVAINPCLSVERPKRKTEGIRP 173
               + R  T  P++  + L  +  +F  A +       +  NP  +V RPK      R 
Sbjct: 64  SKWRDERLKTTSPATVNRLLNLLSHVFTVAAQDWGMGGLI--NPVRNVRRPKNPPARERR 121

Query: 174 WTKEDMQQFKSFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTG 230
               ++++  +  + GSQ       F + +G+R  +  +     +  +  I  I   KT 
Sbjct: 122 LFPGEIERIIA--ATGSQAIGDVIWFAIETGMRRKEIAQMKWADVGMEEGILRIPDTKTD 179

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT----QFSIWFKAKATKA------ 280
              T+ L    +++L+  P          D++           +  F+    +A      
Sbjct: 180 -PRTIPLSTKALRILSSLPR-------RIDEKVWGYDEKGLGITRVFQEALKRARAVYEK 231

Query: 281 -------------GVNKSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGA 326
                         V+ + H +R  + +   + G     E+ A  G KT+   + YT   
Sbjct: 232 ECEEKGEKPDSAFLVDLTFHDLRHEATSRLFELGIFDVTEVSAITGHKTLQMLKRYTHH- 290

Query: 327 DRIRLGIKNSRRISSVVDSD 346
           +  RL  K + +  +  ++D
Sbjct: 291 NPSRLAKKLNAQTQNKEEND 310


>gi|116688233|ref|YP_833856.1| phage integrase family protein [Burkholderia cenocepacia HI2424]
 gi|116646322|gb|ABK06963.1| phage integrase family protein [Burkholderia cenocepacia HI2424]
          Length = 379

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 60/342 (17%), Positives = 112/342 (32%), Gaps = 30/342 (8%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEY 78
           G  I   R   G++          F  A  + L  S      +++   K TT+     +Y
Sbjct: 41  GTWIARRRNEAGKQEYKALGTLPAFDDAVKATLEWSKAVDAGVST---KATTVTNACEQY 97

Query: 79  RKSAHWGSLAVNSRISFESYFDQII--RKSGDFDYRKITTKHIRSGV------------- 123
            K       + +S++  E  F +++   K G  D  K+ T H++  +             
Sbjct: 98  VKHLGLHKGS-SSKLDAEGRFKRLVYDDKIGRIDLSKLRTSHVKDWLAEQISEIEESAED 156

Query: 124 -ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC-LSVERPKRKTEGIRP-WTKEDMQ 180
            +  +    SA + L S++     A+    VA +    +V + K      +     E   
Sbjct: 157 EDDLRRAKDSANRNLASLKAALNLALHDRLVATDAGWKTVTKFKDVGRRRQSFLPAEQRS 216

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
                 +E    R   + +L++  R  +  RA V+H      ++          V L   
Sbjct: 217 ALIDACAE--DIRQLVKAMLFTAARPGELARACVKHFDRQQGTLVLDGKTGHRVVSLASA 274

Query: 241 FMKLLAMTPIGK---ETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSAT 295
            ++       GK      F     Q  N   +   FK     A +  S   + +R  + +
Sbjct: 275 AIRFFDEQTKGKIANAPIFSTEYGQSWNKDSWKKPFKDAVKTAKLPDSVVMYSLRHTAIS 334

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNS 336
               +G  + E+    G  T    + Y     DR+R  +   
Sbjct: 335 EMIASGIDSFEVARMAGTSTEMIDKHYGHLRHDRMRAKLDAI 376


>gi|317181986|dbj|BAJ59770.1| integrase-recombinase protein [Helicobacter pylori F57]
          Length = 355

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/284 (12%), Positives = 92/284 (32%), Gaps = 55/284 (19%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           L++E+  S + G L++ ++ ++      +       +  +    +I              
Sbjct: 101 LLAEFL-SVYTGGLSLATKKNYRIALLGLFSYIDKQNQDENEKSYIY------------- 146

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS-------FW 186
              L ++  + + A                     +       E++++F           
Sbjct: 147 NITLKNISGVNQSA-------------------GNKLPTHLNNEELEKFLDGIDKIEMSA 187

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDG---- 240
              ++ RL  + ++++G+R +++ +  ++    +N  ++I  +  G      +       
Sbjct: 188 KVRTRNRLLIKIIVFTGMRSNEALQLKIKDFTLENGCYTILIKGKGDKYRAVMLKAFHIE 247

Query: 241 --FMKLLAMT---PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKF 292
               + L      P+  +  F N     +         +     AG+ +    AH +R  
Sbjct: 248 SLLKEWLMERELYPVKNDLLFCNQKGSALTQAYLYKQVERIINFAGLRREKNGAHMLRHS 307

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
            AT+          +    G  +++ +  YT   D+ RL    S
Sbjct: 308 FATLLYQKRHDLILVQEALGHASLNTSRIYTH-FDKQRLEEAAS 350


>gi|306845239|ref|ZP_07477815.1| Phage integrase [Brucella sp. BO1]
 gi|306274398|gb|EFM56205.1| Phage integrase [Brucella sp. BO1]
          Length = 308

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 78/239 (32%), Gaps = 12/239 (5%)

Query: 93  ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEY 152
            SF    D+I++ +    + +     I   +  R ++ ++  + + ++  L + A +   
Sbjct: 63  RSFLGEIDEILKGARFSGFDQEMLDSIIGTLRERGNSNATINRKMAALSKLLRKAHKMGD 122

Query: 153 VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY-SGLRCSDSCR 211
           +  N    + R K +   IR    E+ ++  +      +        L  +G R  ++  
Sbjct: 123 I-FNLPEFI-RQKERVGRIRFLEHEEEKRLFAAIKSRCEDSYRLSVFLVDTGCRLGEAIG 180

Query: 212 AGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI 271
                +Q    +    K+    TV L     K   +     +  F       +N  +F  
Sbjct: 181 LTWNDIQEQRVTFWVTKSNRSRTVPLTRRARKASHIPHERLKGPF-----SMLNQVRFRQ 235

Query: 272 WFKAKATKAGVNKS----AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            +     + G+        H +R   A+     G     +    G +T+     Y   A
Sbjct: 236 IWNEAKAEVGLGADDQIVPHILRHTCASRLVRGGIDIRRVQMWLGHQTLQMTMRYAHLA 294


>gi|296450534|ref|ZP_06892288.1| phage integrase family prophage LambdaCh01 [Clostridium difficile
           NAP08]
 gi|296879344|ref|ZP_06903339.1| phage integrase family prophage LambdaCh01 [Clostridium difficile
           NAP07]
 gi|296260609|gb|EFH07450.1| phage integrase family prophage LambdaCh01 [Clostridium difficile
           NAP08]
 gi|296429887|gb|EFH15739.1| phage integrase family prophage LambdaCh01 [Clostridium difficile
           NAP07]
          Length = 380

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 44/292 (15%), Positives = 96/292 (32%), Gaps = 37/292 (12%)

Query: 86  SLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTSMRV 142
           ++++ +  ++ S   + I    G +  + +   HI++ ++    K  P S    +  +++
Sbjct: 88  NISLATYNNYVSICKNYINPSIGKYKIQDLHPIHIQNYIDKLSYKLNPQSIKIHINILKL 147

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202
             K A R + +  N    +E P+ K      + +E M +        ++  L     +  
Sbjct: 148 AIKRAYRLKLIKENVMDGIEAPRYKKFKNEIYDREQMIKLLDLAK-NTEMELPINLAIGL 206

Query: 203 GLRCSDSCRAGVQHLQ---------------NNIFSIKTQKTGTIIT-VELPDGFMKLLA 246
           GLR S+       ++                N    +K  KT + I  +  P   M LL 
Sbjct: 207 GLRISEVLGLTWDNIDFEENTITVNKITSRINGSVILKEPKTESSIRKISSPKELMSLLK 266

Query: 247 MTPIGKETFFINNDKQ-------------KMNATQFSIWFKAKATKAGVNK-SAHGVRKF 292
              I +    + +  +              +     S  FK    K  +     H +R  
Sbjct: 267 EYKIKQNKNLLKSSIRNNNNLLFFNKKCEPIAEDVISKKFKRFLEKNELPHIRFHDLRHS 326

Query: 293 SATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVV 343
             T+  ++      +    G   +      Y+       +  + S +IS  +
Sbjct: 327 HVTLLINSKVPIKVISERVGHSNISTTLSVYSHVL--KEMDKEASDKISESL 376


>gi|288800626|ref|ZP_06406084.1| integrase [Prevotella sp. oral taxon 299 str. F0039]
 gi|288332839|gb|EFC71319.1| integrase [Prevotella sp. oral taxon 299 str. F0039]
          Length = 431

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 52/281 (18%), Positives = 88/281 (31%), Gaps = 37/281 (13%)

Query: 97  SYFDQIIRKSG--DFDYRKITTKHIRSGV---ESRKHTPSSAIQFLTSMRVLFKWAVRQE 151
               + I+  G  D D R IT +         + +    SS   +L  +  L   AV Q 
Sbjct: 136 RMLCEFIKDKGNEDIDIRTITEELFEEYRFFLKKKGLKGSSINNYLCWLSRLMFRAVSQR 195

Query: 152 YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WSEGSQPRLAFEFLLYSGLRCSD 208
            +  NP    E  K + + IR  +K D+    +     S+    R  F F  ++GL  +D
Sbjct: 196 IIRYNPFEHAEYEKVE-KAIRFLSKSDVANLMAMKMCDSDAELARRMFIFSCFTGLAITD 254

Query: 209 SCRAGVQHLQ---NNIFSIK--TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK 263
                  H++   +    I+   QKT     V L      ++      K    +  +   
Sbjct: 255 MEHLTFGHIKSAADGQMYIRKERQKTKVEFIVPLHPIAKTIIEQQRQLKA---VKEEGNN 311

Query: 264 M------------NATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMA 309
           M            +    +          G+    S H  R    T+   AG     +  
Sbjct: 312 MDMDNRLIFQPCCSRNVLAAKLSIVGKACGIKQRLSYHMGRHTFGTMCLSAGIPIESIAK 371

Query: 310 TYGWKTVDQAETYTKGADRI------RLGIKNSRRISSVVD 344
             G  ++   + Y +  D        RL  K+  +     D
Sbjct: 372 MMGHASIASTQIYAQVTDCKISKDMDRLIAKHKAKEKETAD 412


>gi|255656037|ref|ZP_05401446.1| integrase [Clostridium difficile QCD-23m63]
          Length = 370

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 44/292 (15%), Positives = 96/292 (32%), Gaps = 37/292 (12%)

Query: 86  SLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTSMRV 142
           ++++ +  ++ S   + I    G +  + +   HI++ ++    K  P S    +  +++
Sbjct: 78  NISLATYNNYVSICKNYINPSIGKYKIQDLHPIHIQNYIDKLSYKLNPQSIKIHINILKL 137

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202
             K A R + +  N    +E P+ K      + +E M +        ++  L     +  
Sbjct: 138 AIKRAYRLKLIKENVMDGIEAPRYKKFKNEIYDREQMIKLLDLAK-NTEMELPINLAIGL 196

Query: 203 GLRCSDSCRAGVQHLQ---------------NNIFSIKTQKTGTIIT-VELPDGFMKLLA 246
           GLR S+       ++                N    +K  KT + I  +  P   M LL 
Sbjct: 197 GLRISEVLGLTWDNIDFEENTITVNKITSRINGSVILKEPKTESSIRKISSPKELMSLLK 256

Query: 247 MTPIGKETFFINNDKQ-------------KMNATQFSIWFKAKATKAGVNK-SAHGVRKF 292
              I +    + +  +              +     S  FK    K  +     H +R  
Sbjct: 257 EYKIKQNKNLLKSSIRNNNNLLFFNKKCEPIAEDVISKKFKRFLEKNELPHIRFHDLRHS 316

Query: 293 SATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVV 343
             T+  ++      +    G   +      Y+       +  + S +IS  +
Sbjct: 317 HVTLLINSKVPIKVISERVGHSNISTTLSVYSHVL--KEMDKEASDKISESL 366


>gi|69245847|ref|ZP_00603664.1| Phage integrase [Enterococcus faecium DO]
 gi|257882019|ref|ZP_05661672.1| phage integrase [Enterococcus faecium 1,231,502]
 gi|258615559|ref|ZP_05713329.1| phage integrase family site specific recombinase [Enterococcus
           faecium DO]
 gi|293563473|ref|ZP_06677921.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium E1162]
 gi|294620814|ref|ZP_06700018.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium U0317]
 gi|314947742|ref|ZP_07851149.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0082]
 gi|68195549|gb|EAN09991.1| Phage integrase [Enterococcus faecium DO]
 gi|257817677|gb|EEV45005.1| phage integrase [Enterococcus faecium 1,231,502]
 gi|291599599|gb|EFF30612.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium U0317]
 gi|291604475|gb|EFF33961.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium E1162]
 gi|313645722|gb|EFS10302.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0082]
          Length = 380

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 59/327 (18%), Positives = 107/327 (32%), Gaps = 55/327 (16%)

Query: 45  PAYMSALTGSTPKREYINSPRKKPTTLKWL----ISEYRKSAHWGSLAVNSRISFESYF- 99
               +AL       +     +   TT + L    I  YR       +  +S    + +  
Sbjct: 43  AEAQTALNRLLVDFKEKQEFKINVTTFQELYELWIDNYR-----TRVKPSSVAVAQRFCK 97

Query: 100 DQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL 159
           + I+   G+    KI+  + +  V     T         +   +FK+ V  E    NP  
Sbjct: 98  NHILPAFGELRLDKISVSYCQKQVNEWHKTLKQYGFLRKTTAQIFKFGVAMEVCKDNPMS 157

Query: 160 SVERPKRKTEGIRPW---TKEDMQQFKSFWSEGSQPRLA--FEFLLYSGLRCSDSCRAGV 214
                 RK E  +P    TK+ +Q F     E +  +L   F  L Y+G+R S++     
Sbjct: 158 K-TLLPRKIEEEQPLKFYTKDQLQLFLQNTKENNSVKLYTFFRLLAYTGMRKSEALALQW 216

Query: 215 QHLQNNIFSIKTQKT-----------------GTIITVELPDGFMKLLAMTP-------- 249
           + +     +I   KT                  +  T++L D  +K L +          
Sbjct: 217 EDIDYFNKTITIGKTIAQDEFNQVVLQVPKTKNSSRTIQLDDFTLKQLRIWQQEQMKIMI 276

Query: 250 -------IGKETFFINNDKQKMNATQFSIW----FKAKATKAGVNKSAHGVRKFSATISA 298
                    K+  F  N  +       + W    +K    +  +  + HG R    ++  
Sbjct: 277 LYGYNTNSPKQFLFTTNTNKLYYPQVVNDWLDWIYKKTPMEPQI--TPHGFRHTHCSLLF 334

Query: 299 DAGATAHELMATYGWKTVDQAE-TYTK 324
           ++GA+  E+    G K +      Y  
Sbjct: 335 ESGASIKEVQERLGHKDIKTTMNIYAH 361


>gi|320645984|gb|EFX14961.1| hypothetical protein ECO9389_20810 [Escherichia coli O157:H- str.
           493-89]
 gi|320651284|gb|EFX19715.1| hypothetical protein ECO2687_12910 [Escherichia coli O157:H- str. H
           2687]
 gi|320667430|gb|EFX34383.1| hypothetical protein ECOSU61_03778 [Escherichia coli O157:H7 str.
           LSU-61]
          Length = 394

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 55/292 (18%), Positives = 88/292 (30%), Gaps = 36/292 (12%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
           KK   +K  + EY K     +L+ ++   +E     +          ++T   +++ + S
Sbjct: 89  KKTKNIKSYLDEYLKICMNRNLSPSTIGGYEKCISALSELH-KLHVTELTPAVLKNWIAS 147

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE---------RPKRKTEGIRPWTK 176
           RK    +    L+ +R     AV    + INP   V          +P      + P+  
Sbjct: 148 RKTKLKTIRNNLSFLRSAIDEAVTDGLLTINPVTLVSASRYHVVDSKPNADDYEVDPFAP 207

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-------------NNIFS 223
            +               L F F   +GLR S+ C      +                I  
Sbjct: 208 AETSAIYQHCKYQEWQNL-FRFAFNTGLRSSELCALRWTDIDFIGNTAHIQAASVVGILK 266

Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKET---FFINNDKQ--KMNATQFSIWFKAKA- 277
               K GT   V+L    +  L            F  ++ K      A   +I  KA   
Sbjct: 267 GTKTKAGTR-KVKLNSEALAALQAQKQFTFMKSEFIFSDPKTKEPW-ANADAIRKKAWVP 324

Query: 278 --TKAGVNKS-AHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKG 325
              KAGV     +  R   AT     G     L    G K  +     Y + 
Sbjct: 325 TLKKAGVRYRNPYQTRHTFATRHISQGVNLFWLAGQMGHKGPEMLFRHYGRY 376


>gi|328474785|gb|EGF45590.1| site-specific recombinase IntIA [Vibrio parahaemolyticus 10329]
          Length = 320

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 43/293 (14%), Positives = 89/293 (30%), Gaps = 55/293 (18%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWA 147
           A  +  S+  +  + I         K++   +   +         A++          + 
Sbjct: 19  ANKTIESYLFWIKRFIVFHQLAHPSKLSEDDVIRFLSHLAIDEKVAVKTQALALNAISFL 78

Query: 148 VRQEYVAINPCLSVERPK--RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLR 205
             +++      L +   K   + +     T++++++F        + +L  + L  SGLR
Sbjct: 79  Y-RDFFKTPLSLDMRFQKSLTEKKLPVVLTRDEVRRFVQHIDP--RYKLHIQLLYGSGLR 135

Query: 206 CSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMK-------------------- 243
             +  R  +Q +     +++    K G   TV L     +                    
Sbjct: 136 IMECLRLRIQDIDYYYGAVRVWQGKGGKNRTVTLAKELHEPLKSQMNLARNYYFKDRHVP 195

Query: 244 ----------LLAMTPIGKETF-----FINN-----------DKQKMNATQFSIWFKAKA 277
                     L    P  +  F     F +N            +  +N +      K  A
Sbjct: 196 GYAGVYISEGLRRKYPNAELDFNWHFLFPSNKLSVDKETGQLRRHHINESAIQRAVKRSA 255

Query: 278 TKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
             A + K+   H +R   AT   ++GA    +    G   V   + YT   +R
Sbjct: 256 LDASIEKTVTCHTLRHSFATHLLESGADIRTVQEQLGHTDVKTTQIYTHVIER 308


>gi|60256918|gb|AAX14941.1| integrase [Xanthomonas campestris pv. oryzae]
          Length = 315

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 42/309 (13%), Positives = 90/309 (29%), Gaps = 60/309 (19%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT---- 129
           L+ + R        ++ +  ++  +  + I  +G     ++    + + +          
Sbjct: 8   LLDQVRGRLRLRHYSLRTEQAYVGWIRRFILANGKRHPGQMGQVEVEAFLTDLATRGQVS 67

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINP-CLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
             +  Q L ++  L++  +  E     P   ++ R KR        + E++ +  +    
Sbjct: 68  AGTQNQALAALLFLYREVLGVEL----PWMENLVRAKRPRRIPVVLSAEEVARLLTMLEG 123

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFM---- 242
               RL    L  SG+R  +  R  ++ +        ++  K G    V  P        
Sbjct: 124 SC--RLMAGLLYGSGMRLLECLRLRIKDVDVVRGEIVVRDGKGGKDRRVPPPHSLRGELM 181

Query: 243 -------------------------KLLAMTPIGK-----ETFFINND-----------K 261
                                     L    P        +  F+              +
Sbjct: 182 QQRERALLLHAADLAEGAGRVFLPHALARKYPNANVEPGWQYLFLAARRSVDPRSGRVGR 241

Query: 262 QKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQA 319
             ++        ++   +AG+ K A  H +R   AT   +AG     +    G K V   
Sbjct: 242 HHVSEEVLQRAVQSARRQAGIAKPATCHTLRHSFATHLLEAGHDIATVQELLGHKDVTTK 301

Query: 320 ETYTKGADR 328
           + Y     R
Sbjct: 302 QIYAHVLGR 310


>gi|297193576|ref|ZP_06910974.1| conserved hypothetical protein [Streptomyces pristinaespiralis ATCC
           25486]
 gi|197718147|gb|EDY62055.1| conserved hypothetical protein [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 457

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 62/360 (17%), Positives = 101/360 (28%), Gaps = 63/360 (17%)

Query: 14  ERTRHG-KIIYYFRK--GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
           +  R+G  + Y  R     G      +P     +     A   +   R     PR    T
Sbjct: 62  KTERYGSGLRYRARYVGPDGTEKSKSFPDRQKRLADQWLAHIEADMARGQYIDPRAARIT 121

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH- 128
            +     +  +        N++ S ES          G          HIR  V   +  
Sbjct: 122 FQQYAERWVAT---QGADPNTQASMESQLRLHAFPYLGSRPLGSFQPAHIRDWVRQLQEN 178

Query: 129 --TPSSAIQFLTSMRVLFKWAVRQEYVAINP--CLSVERPKRKTEGIRPWTKEDMQQFKS 184
               S A    +++R     AV   ++  NP    SV  P    + + PWT E +   ++
Sbjct: 179 GVRGSYARTIYSNVRAALSAAVDDGHLPRNPCAARSVRPPTVDDKRVVPWTPERVFAVRA 238

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQ-------------KT 229
              E  + +   +     GLR  +     V     +++   +  Q             K 
Sbjct: 239 AMPE--RYQAMVDLGGGCGLRQGEILGVAVDAIDFESDTLHVVQQLKLSRSKAVFAPPKG 296

Query: 230 GTIITVELPDGFMKLLAM-------------------TPIGKETFFINNDKQKMNATQFS 270
           G +  V LP      L                      P+ K+  F       +  T  +
Sbjct: 297 GKLRDVPLPGPVADALRAHMKRFPPVEITLPWKVADGPPVTKQLIFTGPRGGHVRRTSLN 356

Query: 271 --IWFKAKATKAGVNK-------------SAHGVRKFSATISADAGATAHELMATYGWKT 315
              W  A A    +                 H +R F A++  DAG     L    G   
Sbjct: 357 EEAWKPALAAACVIPVPERGQPYAESRENGMHALRHFYASVLLDAGENIKALAEYLGHSE 416


>gi|227877412|ref|ZP_03995480.1| possible bacteriophage integrase [Lactobacillus crispatus JV-V01]
 gi|227862916|gb|EEJ70367.1| possible bacteriophage integrase [Lactobacillus crispatus JV-V01]
          Length = 382

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 58/362 (16%), Positives = 120/362 (33%), Gaps = 54/362 (14%)

Query: 11  VTKERTRHGKIIYYFR--KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP---- 64
           + K + + GK+ Y F+   G                 +Y  A    T  +E   S     
Sbjct: 9   IYKYKLKSGKVKYGFKTYIGTDPETGKAVKPSRQGFDSYKEAEAAKTKLKEEGPSKFTHK 68

Query: 65  ---RKKPTTLK-----WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT 116
              ++   T++     WL   YR      +L   +R S  ++ + I ++ G      I  
Sbjct: 69  KEQKENRKTVQEVYEIWL-EVYRADVRGSTL--RTRKS--NWKNNIEKEFGGVYIDGIDI 123

Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR-KTEGIRP-- 173
            H++S       T  +    L  +  + K+A+ +++   +P   +  PK+ K +   P  
Sbjct: 124 NHLQSFATKLAETHINYRSILNLLHRVIKYAILRDWCDRDPFDKIVMPKKTKAKSKHPAN 183

Query: 174 --WTKEDMQQFKSFWSEGSQPRLAFEFLLY-SGLRCSDSCRAGVQHLQ--NNIFSIK--- 225
             ++  +++ F     +  +    +   +   G R  ++     +++   N    I+   
Sbjct: 184 NFYSLSELKTFLECAKKYKEKYYVYFMTVGNLGCRPGEALALKWKNIDFKNKEIFIQHSI 243

Query: 226 -----------TQKTGTIIT-VELPDGFMKLLA------MTPIGKETFFINNDKQKMNAT 267
                        KT   +  V L D    +L       +   G +  F  ++      +
Sbjct: 244 STDENGNKIYGPTKTPASVRKVPLSDQLAIVLKEYKEETIYKKGNDFIFHKDNGDFYERS 303

Query: 268 QFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG---ATAHELMATYGWKTVDQA-ETY 322
               W         + + + HG R   AT   + G   A   ++    G K      +TY
Sbjct: 304 APDHWITTLYNNYPLRRITPHGFRHTLAT-LLNNGKNNANIKDIQYLLGHKKASTTMDTY 362

Query: 323 TK 324
           + 
Sbjct: 363 SH 364


>gi|220915140|ref|YP_002490444.1| integrase family protein [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219952994|gb|ACL63378.1| integrase family protein [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 414

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/271 (15%), Positives = 86/271 (31%), Gaps = 25/271 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMR 141
              A  +   +      ++R  GD     ++   ++  +  R        +  + L+++R
Sbjct: 79  SDRAEGTLEMYAKKGGHLVRVFGDQQVHALSLDKVQDYINQRLGEGAARETVRKELSTLR 138

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRP-WTKEDMQQFKSFWSEGSQPRLAFEFLL 200
           V  + A  ++    +P       +          + E+  +  +      + R      +
Sbjct: 139 VALETAKARKLYVGDPRSIFPPFRVTYRPRERHLSVEEFGKLLAVLDA--KRRRWIMVAV 196

Query: 201 YSGLRCSDSCRAGVQ---HLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKETFF 256
           YSG R S+          +L+     +   KT     +V +       LA  P  K  F 
Sbjct: 197 YSGARRSEVEALRWDTHVNLETGWLVLPGTKTAKARRSVPILQPLADELASDPSKKG-FV 255

Query: 257 INNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKT 315
           +                +     AGV + S + +R+  A+     G  +  +    G  +
Sbjct: 256 VEAW------ANVGRDLRIACAHAGVARVSPNDLRRTFASWMKQQGEDSAVVAKLLGHAS 309

Query: 316 VDQAET-YTKGADRIRLGIKNSRRISSVVDS 345
               +  Y       RL  +N RR  + + S
Sbjct: 310 TRMVDLVY------GRLNDENLRRAVAKLPS 334


>gi|329960976|ref|ZP_08299255.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
 gi|328532262|gb|EGF59066.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
          Length = 405

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 39/253 (15%), Positives = 88/253 (34%), Gaps = 23/253 (9%)

Query: 87  LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKW 146
           L    +  ++     +       +   I + H    ++ +    +S  + L  ++ +   
Sbjct: 146 LREFVQQKYKRDDLYLRE----LNINFIQSFHSFLKID-KGMAQNSCTKHLKLLKKIINL 200

Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ---FKSFWSEGSQPRLAFEFLLYSG 203
           +V   Y++ NP  + +  +R+   +    +E++++   F +      + +  F F  ++G
Sbjct: 201 SVANAYISFNPFTTYK-VEREPVEVDFLDEEELRKIINFDTPLPRLERAKDMFLFGCFTG 259

Query: 204 LRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFIN 258
           L   D      +H + +         +  KTG +  + L      +L     GK+   I 
Sbjct: 260 LSYIDIKTLTPEHFEKDSAGRIWIKKRRVKTGVLSRIPLLPIAKLILDKYKGGKKLLPIQ 319

Query: 259 NDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSA-TISADAGATAHELMATYGWKT 315
           +          + + K  A   G+NK    H  R   A T++     +   +    G   
Sbjct: 320 D------PADINKYLKDIAILCGINKRICFHTSRHTFASTVTLANNISLEVVSKMLGHTN 373

Query: 316 VDQAETYTKGADR 328
                 Y K  D+
Sbjct: 374 TRMTAHYAKLIDK 386


>gi|225405812|ref|ZP_03761001.1| hypothetical protein CLOSTASPAR_05033 [Clostridium asparagiforme
           DSM 15981]
 gi|225042679|gb|EEG52925.1| hypothetical protein CLOSTASPAR_05033 [Clostridium asparagiforme
           DSM 15981]
          Length = 348

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 45/273 (16%), Positives = 88/273 (32%), Gaps = 25/273 (9%)

Query: 73  WLISEYRKSAHWGSLAVNSRISF-------ESYFDQIIRKSG--DFDYRKITTKHIRSGV 123
            L ++   SA W  L + + +         E+Y  +     G  +     ITT+ IR  +
Sbjct: 55  ALSTQLDSSAEWVRLYLATMVVRGCTEKTVETYTQEYKTFFGTINKAIPNITTRDIRGYL 114

Query: 124 ES----RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
                 R +  ++       +R LF+W   +EY+  NP L ++  K        ++ E +
Sbjct: 115 AHCKLVRHNKDTTINNKTRMLRGLFEWLTEEEYIDRNPMLRIKDNKVDHRVKEVFSDEQV 174

Query: 180 QQFKSFWS-EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVEL 237
             +K      G +     +FL  +G+R S+        +   +   I   K      V  
Sbjct: 175 TIYKDLAKQHGKRSIAIVDFLHRTGVRISEMVALDRSDIDFQDRQCIVYGKGRKERPVYF 234

Query: 238 PDG----FMKLLAMTPIGKETFFINNDKQ--KMNATQFSIWFKAKA----TKAGVNKSAH 287
                      L          F+   K   ++      +  +         AG+  + H
Sbjct: 235 SGDAAVHLRDYLESRTDNNPALFVGIRKPFNRLTDDAVRLILREIRDMDDRMAGIAINPH 294

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAE 320
             R+   T   +       +    G K ++  +
Sbjct: 295 KWRRQFVTELLEKDVPLTLVADLAGHKNLNTTK 327


>gi|206599920|ref|YP_002241725.1| gp40 [Mycobacterium phage Fruitloop]
 gi|206287008|gb|ACI12354.1| gp40 [Mycobacterium phage Fruitloop]
          Length = 372

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 51/284 (17%), Positives = 100/284 (35%), Gaps = 42/284 (14%)

Query: 91  SRISFESYF-DQIIRKSGDFDYRKITTKHIRSG---------VESRKHTPSSAIQFLTSM 140
           +   +E Y  + I    GD    K++ + I             +   H P +       +
Sbjct: 92  TIDKYEQYLANDIKPNLGDIPLSKLSEEDIARWVKVMETTGGRDGNGHAPKTLRNKYGFL 151

Query: 141 RVLFKWAVRQEYVAINPCLSVERPK---RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE 197
                 AV + Y++ NP      P+      + IR  T  +  + +   +     +L  +
Sbjct: 152 SGALNAAVPR-YLSTNPASGRRLPRGNAEDDDEIRMLTHAEFDRLRD--AVTPHWKLMVQ 208

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ---------------KTG-TIITVELPDGF 241
           F++ +GLR  +      +H+     +I+ +               KT  +  TV++P   
Sbjct: 209 FMVSTGLRWGEVSALQPKHVDLETSTIRVRQAWKYSSAGYVLGPPKTKRSRRTVDVP--- 265

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIW-FKAKATKAGV--NKSAHGVRKFSATISA 298
            +LL    +  E  F+N D   +    F    +     KAG+    + H +R   A+   
Sbjct: 266 ARLLERLDLSNEFVFVNTDGGPVRYPGFLRRVWNPAVEKAGLVPRPTPHDLRHTYASWQL 325

Query: 299 DAGATAHELMATYGWKTVD-QAETYTKGADR--IRLGIKNSRRI 339
             G     +    G +++    +TYT   DR   R+  +    +
Sbjct: 326 TGGTPVTIVSRQLGHESIQITVDTYT-DVDRTSSRVAAEFMDGL 368


>gi|168262786|ref|ZP_02684759.1| phage integrase family protein [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|205348507|gb|EDZ35138.1| phage integrase family protein [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
          Length = 345

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/216 (15%), Positives = 64/216 (29%), Gaps = 20/216 (9%)

Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTK 176
           H        + +P +          +F    R   + A NP  +V + + +   +   T 
Sbjct: 121 HFARTKRVTQVSPRTMNLEHAYFLAVFNELKRLGEWDAPNPLENVRQFRTEESEMAYLTG 180

Query: 177 EDMQQF--KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234
           E + +   +S  S      +     L +G R  ++ +     +     +    K     T
Sbjct: 181 EQIDRLLEESRHSSAKDLEMIVRICLSTGARWGEAEKLKRSQIGAGKVTFIKTKGKRNRT 240

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA----HGVR 290
           + L      ++A  P      F          +     F++   +AG+   A    H +R
Sbjct: 241 IPLDP---AIIAELPKKNGVLF----------SPCYYAFRSALERAGIELPAGQLTHVLR 287

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
              A+     G     L    G   +     Y   A
Sbjct: 288 HTFASHFMMNGGNILVLQKILGHTDIKMTMRYAHFA 323


>gi|251772914|gb|EES53473.1| putative phage integrase [Leptospirillum ferrodiazotrophum]
          Length = 342

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 50/339 (14%), Positives = 103/339 (30%), Gaps = 42/339 (12%)

Query: 16  TRHGKIIYY--FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
            + G + +    R+      R    +    + A+ + +     +  +++    + T L  
Sbjct: 5   DKRGDLQWRDQIRRKGYPVQR-KTFNSRAEVEAWAAVVESEMARGIFVSRAEAEKTILDE 63

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVES--RKHTP 130
            +  Y +            + + S      R          I    +    +   +  +P
Sbjct: 64  ALDRYEREVTSCQKGA---VQYASLIRIWKRTPFAARFLSSIQGSDLAKYRDEWLKSVSP 120

Query: 131 SSAIQFLTSMRVLFKWAV-RQEYVA-INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
            +    L  +  LF  A+        +NP   + +PK      R     +M +  S  SE
Sbjct: 121 KTVSHELGILSRLFHTAIKDWGMGGMVNPVSQIRKPKLPKGRDRRLLPGEMDRIIS-ASE 179

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
                    F L +G+R S+          L+    ++   K G    V L    +++L+
Sbjct: 180 SPVLSDIIRFALETGMRRSEIAGMTWDLVDLKKRTTTLPETKNGEKRIVLLSMEAIRILS 239

Query: 247 MTPIGKETFFINNDKQ--KMNATQFSIWFKAKATKA-------------------GVNKS 285
             P          D +   M     +  F    T+A                     + +
Sbjct: 240 NLPR-------RIDGKVWGMGPDSITHAFIRALTRARAIYEKDREEKGEKPDDSFLADLT 292

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            H +R  + +   + G    ++ A  G KT+   + YT 
Sbjct: 293 FHDLRHEATSRFFEKGLNPMQVAAITGHKTLQMLKRYTH 331


>gi|311234212|gb|ADP87066.1| integrase family protein [Desulfovibrio vulgaris RCH1]
          Length = 490

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 64/178 (35%), Gaps = 14/178 (7%)

Query: 161 VERPKRKTEGIRPWTKE-DMQQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHL 217
           V      +   +P +   +     +  +E  + R     E L  SGLR S++    V   
Sbjct: 244 VPTLPAGSTSRKPLSTAVESMSGDTLHAEAIRRRDLALAELLYGSGLRISEALGLDVLDA 303

Query: 218 QNNIFSIKTQKTGTIITV-ELPD----GFMKLLA----MTPIGKETFFINNDKQKMNATQ 268
             +   ++    G+   +  L D       + L     +   G+   F+     +++  Q
Sbjct: 304 DPSAGVVRVLGKGSKERMSPLSDTSVDALREWLHFRHHLASEGERALFVGARGDRLDRRQ 363

Query: 269 FSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            +    A   +AG+ +S   HG+R   AT   +AGA    +    G   +   + YT 
Sbjct: 364 ATRIIDALCRRAGLPQSVSPHGLRHSFATHLLEAGADLRSVQELLGHARLATTQRYTH 421



 Score = 40.4 bits (93), Expect = 0.45,   Method: Composition-based stats.
 Identities = 15/108 (13%), Positives = 41/108 (37%), Gaps = 8/108 (7%)

Query: 85  GSLAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIR---SGVESRKHTPSSAIQF 136
              +  +  ++ +   Q          G      +T +H++   + +   +   SS  + 
Sbjct: 73  KGYSPATVTAYGTDLMQFHGVLTAEGFGLDAPEDVTRRHVQRYLAELHRLRTARSSVARK 132

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
           L+++R  F++ +R   V  +P  +V  P+++    R    + +     
Sbjct: 133 LSALRAFFRYMLRLRRVTADPVAAVHNPRQEKRQPRTLNVDQVFALLD 180


>gi|160937812|ref|ZP_02085171.1| hypothetical protein CLOBOL_02704 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439251|gb|EDP17004.1| hypothetical protein CLOBOL_02704 [Clostridium bolteae ATCC
           BAA-613]
          Length = 278

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/262 (11%), Positives = 86/262 (32%), Gaps = 18/262 (6%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
           + +++K     + + N+   +    +Q          R +    +        + P +  
Sbjct: 13  LDQFQKYLMTHNKSPNTICVYRYAVEQFYHLYPQLTPRNLQLYKVYLLEH---YRPQTVN 69

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
             + ++    ++       +I P   ++  ++KT   +  ++ D + +       S+   
Sbjct: 70  LRIRALNCYMEY----RQASITPVSMIK-IQQKTYLDKIISQADYE-YLKRCLAESEEYT 123

Query: 195 ---AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVE--LPDGFMKLLAMT 248
                  +  +G+R S+     ++ +      I ++      + +   L     + LA T
Sbjct: 124 YYFIVRLITATGVRISELITFQIEDVHTGHKDIYSKGNKMRRVYIPRGLVRELQEWLAAT 183

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGATAH 305
                  F+N     ++ +     FK  A + G++      H  R   A    +      
Sbjct: 184 HRSTGPLFLNRFHSPISPSGIRAQFKVFAARYGLDPEVVYPHSFRHRFAKNFIEKCGDIS 243

Query: 306 ELMATYGWKTVDQAETYTKGAD 327
            L    G ++++    Y + + 
Sbjct: 244 LLSDLLGHESIETTRIYLRRSS 265


>gi|265752104|ref|ZP_06087897.1| integrase [Bacteroides sp. 3_1_33FAA]
 gi|263236896|gb|EEZ22366.1| integrase [Bacteroides sp. 3_1_33FAA]
          Length = 267

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 45/282 (15%), Positives = 97/282 (34%), Gaps = 27/282 (9%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           ++++++      +LA N+  S+       +   G+ + + +        VE+ K  P + 
Sbjct: 1   MVTKFKNHLAKTNLAKNTVTSYVWTVQYFLNHYGEVNKKNLLAYKGY-WVENFK--PQTV 57

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI--RPWTKEDMQQFKSFWSEGSQ 191
              L  +    ++  +++         V+  K + +       +  D +  K+       
Sbjct: 58  NLRLQGINKYLEFTKQEKL-------KVKFVKVQQKNFLENVISDADYKFLKAQLKVDGY 110

Query: 192 PRLAFE--FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM----KLL 245
               F   F+  +G R S+      +H++     +   K G I  + +P        K L
Sbjct: 111 EEWYFIVWFMAATGARVSELLHIKAEHIKVGYLDLY-SKGGKIRRLYIPKNLRTESEKWL 169

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGA 302
               +     F+N   Q++     +   K  A K G+NK     H  R   A    D   
Sbjct: 170 KNQGLTSGYIFLNRFGQRITTRGIASQLKHFAEKYGMNKEVVYPHSFRHRFAKNFLDRFN 229

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
               L    G ++++    Y +     R   +  + +  VV+
Sbjct: 230 DLALLADLMGHESIETTRIYLR-----RTASEQQKIVDKVVN 266


>gi|261381020|ref|ZP_05985593.1| integrase/recombinase, phage integrase family [Neisseria subflava
           NJ9703]
 gi|284796054|gb|EFC51401.1| integrase/recombinase, phage integrase family [Neisseria subflava
           NJ9703]
          Length = 330

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 47/321 (14%), Positives = 90/321 (28%), Gaps = 34/321 (10%)

Query: 16  TRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMS-ALTGSTPKREYINSPRKKPTT--LK 72
            R+GK     R     +         TF     + A    T            P +    
Sbjct: 6   KRNGKYRVKVRLKGVTK-------SETFTLKSDAVAWAARTEAAILDGVQGNAPKSLYFA 58

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132
            L++ YR           +R         +     D     +   H     ++RK     
Sbjct: 59  DLLTRYR--DEITPTKRGNRAETYRLNRALRSDLADIKVSDLRPHHFAQWRDNRKKEVQE 116

Query: 133 A--IQFLTSMRVLFKWAV-RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
           A   + L ++  + + AV     +  NP L + RP +          + +          
Sbjct: 117 ATVRRELETLSAVCQMAVKEWGLLPSNPLLQIRRPGKGKARNYIPPDDIVLAVVRELGVA 176

Query: 190 ---------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELP 238
                     +  LA  F + + +R  + C    + +     +  +   K G+   V L 
Sbjct: 177 DGVPIITAKQRIGLAVLFAIETAMRAGEICNMNWRDVHLARRVVHLPMTKNGSSRDVPLS 236

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKA--TKAGVNKSAHGVRKFSATI 296
              M +L   P  +     +     +++    + F+      +       H  R  + T 
Sbjct: 237 KKAMAILDRLPRSESGSVFD-----ISSHTLDVMFRRARAKVEGAEGFHFHDTRHKALTR 291

Query: 297 SADAGATAHELMATYGWKTVD 317
            A A     +L    G K + 
Sbjct: 292 MA-AMVEPMQLAKISGHKDLR 311


>gi|83815097|ref|YP_445629.1| tyrosine recombinase xerC [Salinibacter ruber DSM 13855]
 gi|83756491|gb|ABC44604.1| tyrosine recombinase xerC [Salinibacter ruber DSM 13855]
          Length = 311

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 48/286 (16%), Positives = 89/286 (31%), Gaps = 49/286 (17%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFK 145
           +  ++  +   F+Q +    D   R +T  H++   E  K     SS  + L++++ LF 
Sbjct: 11  SARTQEEYARDFEQFVEFV-DLPLRYVTLGHLQEYREHLKDGYARSSQKRKLSAVKSLFT 69

Query: 146 WAVRQEYVAINPCLSVERPK-RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGL 204
           +  +  Y A N   ++  P  R     R  ++ D+           +  +       SG 
Sbjct: 70  FGTKLRYFAHNVGAALSTPSVRNDRAERILSEADLWALL-RDERDLRNHVLLRLFYASGG 128

Query: 205 RCSDSCRAGVQHLQN-----------NIFSIKTQKTGTIITVELPDGFMKLLAMT----- 248
           R SD      + L++                   K G    V L      L+        
Sbjct: 129 RISDVEDLRWRDLKDRPDLNGPDGRPGGQVTFFGKGGKTRAVTLYSKVWSLIIRLRENEE 188

Query: 249 ----PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-------------------- 284
                   +  F +     ++ +Q     K  A +AGV                      
Sbjct: 189 SEGHGAADDPVFRSQKGGCLSRSQIWRVVKKAAVRAGVKLTEKTGSEGAVKRDEEGEPIM 248

Query: 285 ----SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
               S H  R   A+ +   GA    +  T G ++++  +TY    
Sbjct: 249 TSEVSPHWFRHAHASHALQKGADLELVRETLGHESIETTKTYLHAQ 294


>gi|308176207|ref|YP_003915613.1| phage integrase family protein [Arthrobacter arilaitensis Re117]
 gi|307743670|emb|CBT74642.1| phage integrase family protein [Arthrobacter arilaitensis Re117]
          Length = 360

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/242 (14%), Positives = 67/242 (27%), Gaps = 39/242 (16%)

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINP----------------------- 157
            G  +  + P++  + + ++  LF +   ++    NP                       
Sbjct: 99  DGQRADGYAPATVNRRMAAVSGLFTFLAMRDPCLPNPMPKGQESRWVSSAQRSGLLGHLA 158

Query: 158 ---CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGV 214
                S  R +      R    +++           + R     +LY GLR  +     +
Sbjct: 159 TPAARSPLRVREPRRLPRSLESDEVIALFQGLRTY-RDRAMAGLMLYCGLRAGEVLALRI 217

Query: 215 QHLQ-NNIFSIKTQKTGTIITVELPDGFMK-----LLAMTPIGKETFFIN-----NDKQK 263
           + +     + +   K      V L           LLA  P   E          N    
Sbjct: 218 RDVDIGGRWLLVLGKGSRERRVPLDVDVAGVIQTYLLAERPESDEQRLFLVAKGANRGLP 277

Query: 264 MNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           + A      F+     +GV +   H +R    +  A +G     +    G   V+    Y
Sbjct: 278 LTAAGLRTIFRYHREISGVPDGHPHALRHTFGSALAASGVDLSIMRELLGHAHVNTTARY 337

Query: 323 TK 324
             
Sbjct: 338 IH 339


>gi|300781921|ref|YP_003739156.1| phage integrase [Erwinia billingiae Eb661]
 gi|308186479|ref|YP_003930610.1| Tyrosine recombinase xerC [Pantoea vagans C9-1]
 gi|299060187|emb|CAX53378.1| phage integrase [Erwinia billingiae Eb661]
 gi|308056989|gb|ADO09161.1| Tyrosine recombinase xerC [Pantoea vagans C9-1]
          Length = 327

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 43/290 (14%), Positives = 88/290 (30%), Gaps = 35/290 (12%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGVESRKHTP 130
           L   + +       A  +  ++ +          ++G    +                 P
Sbjct: 12  LAERWLQLLSDLGRAQATLTAYRNALRHYFAFCSQNGIKPEKARFEDLAAYISPQLPGMP 71

Query: 131 SSAIQ-----FLTSMRVLFKWAVRQEYVAINP----------CLSVERPKRKTEGIRPWT 175
            SA        L+++R+ + + +  +   +NP                  R  +  R   
Sbjct: 72  FSAASATLQLRLSAIRLWYDFLMYLDLCTVNPLPRSGTPGMLSSGRGLVPRVVKLPRIPD 131

Query: 176 KEDMQQFKSFWSE-GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGT- 231
               Q F    +    + RL      Y  LR S+     +      + +  I+ + T + 
Sbjct: 132 DAQWQCFLYHAAASPLRDRLMLALTYYGALRRSEITSLSIDDFDFAHRLIRIRAETTKSR 191

Query: 232 --------IITVELPDGFMKLLAMTPIGKETFFIN----NDKQKMNATQFSIWFKAKATK 279
                      V +    +  +  T I +   F +    N    ++   +S   +  A +
Sbjct: 192 RERIVCYSPAVVPVLAAHLMQMKRTGIVRGALFRSESDRNQGGPLSFWTWSKTVRKWALE 251

Query: 280 AGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           +G+ + S H  R    T  A AG   HEL    G + +   + Y   + R
Sbjct: 252 SGMPDISTHTFRHLRLTHLARAGWKLHELATYAGHRDLTTTQIYIHLSGR 301


>gi|217979222|ref|YP_002363369.1| integrase family protein [Methylocella silvestris BL2]
 gi|217504598|gb|ACK52007.1| integrase family protein [Methylocella silvestris BL2]
          Length = 428

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 52/328 (15%), Positives = 95/328 (28%), Gaps = 54/328 (16%)

Query: 49  SALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD 108
            A      K     +    P T+  ++  Y K A     + +   S     + I    G 
Sbjct: 85  QAKAREIAKARRQEASGAAPITISTVLDAYLKQAEAQH-SKSVSDSRNRIENHIRPAFGA 143

Query: 109 FDYRKITTKHIRSGVESRKHTPS---------------------------SAIQFLTSMR 141
                +T + I+  +++   +P                            SA + LT +R
Sbjct: 144 MLASDLTQEAIQKWLKALADSPRNVRGKAGTVSRALAKPKTDDEKRRRRASANRTLTILR 203

Query: 142 VLFKWAVRQEYVAIN-------PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
                  R   +  +       P   V+ P+      R +T++++++  +        R 
Sbjct: 204 AALNQGFRSGKITSDTVWRTIQPFREVDAPRV-----RYFTQDEVRRLVNAAQGEF--RS 256

Query: 195 AFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252
                L++G R  + CR  V           +   K+G    V L +           G+
Sbjct: 257 LVNAALFTGCRYGELCRLQVGDFNPDAGTVFVGQSKSGKARHVVLTEEGQGFFRQLTAGR 316

Query: 253 ET---FFINNDKQKMNAT-QFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELM 308
            T        D     A+ Q     +A           H +R  +A+ +   G     + 
Sbjct: 317 PTNALMLSRADGAPWGASHQIRPMAEACKAAKIAKAGFHILRHTAASHNVMGGVPMPVVA 376

Query: 309 ATYGWKTVDQAE-TYTK-----GADRIR 330
              G       E  Y        AD+IR
Sbjct: 377 KNLGHADSRMTEKHYAHLAPSYVADQIR 404


>gi|168765086|ref|ZP_02790093.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC4501]
 gi|217324776|ref|ZP_03440860.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. TW14588]
 gi|189365043|gb|EDU83459.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC4501]
 gi|217320997|gb|EEC29421.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. TW14588]
          Length = 407

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 56/365 (15%), Positives = 116/365 (31%), Gaps = 38/365 (10%)

Query: 16  TRH---GKIIYYF--RKGHGRRI---RLPYPHESTFI-----------PAYMSALTGSTP 56
            RH   G + +YF  R G GR+I   RL   +                 A+++       
Sbjct: 35  VRHSTNGLLTWYFTYRAGTGRQISPERLRLGNYPDLSLKAAREKAAQCRAWLAEGKNPRY 94

Query: 57  KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT 116
           +  +       P T+K  ++ + +S        +           II + G     K   
Sbjct: 95  ELNHAVQDALAPVTVKEALTYWLESYA-KEKRTDYESLKSRINKHIISQIGAMPLEKCEL 153

Query: 117 KHIRSGVESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV---ERPKRKTEGIR 172
           +H  +  +   K  P SA   L   +   K+  ++ Y   N    +   +  K+     R
Sbjct: 154 RHWLACFDQLAKRNPVSAGFLLQVCKQALKYCRKRRYAISNVLDDMVVGDVGKKAEISER 213

Query: 173 PWTKEDM-QQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT--- 226
             T +++ +  ++   +   P        L+  G R ++  R+ VQ              
Sbjct: 214 VLTNKELGELLRALDEKIYPPYYSALIRLLIVFGCRTTELRRSEVQEWDFKEMLWTVPKE 273

Query: 227 -QKTGTIITVELPDGFMKLLAMTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGVN 283
             KT   I   +P+  +  +             +   K + + +++      +  +A   
Sbjct: 274 HSKTKVAIFRPIPEAILPFVMKLVEQNRHTGLLLGELKGQSSVSEYGRTAHRRINQA--P 331

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY--TKGADRIRLGIKN-SRRIS 340
            + H +R    T+  D G   H +      +       Y  ++  D  R  +     R+ 
Sbjct: 332 WTLHDIRHTFTTMLNDLGVEPHVVEQLTAHQLPGMQRVYNHSRYLDAKRDALNLWVERLD 391

Query: 341 SVVDS 345
            +  +
Sbjct: 392 VLAGN 396


>gi|161868003|ref|YP_001598184.1| Int2 [Salmonella enterica subsp. enterica serovar Choleraesuis]
 gi|313116779|ref|YP_004032929.1| integrase/recombinase [Edwardsiella tarda]
 gi|161087382|gb|ABX56852.1| Int2 [Salmonella enterica subsp. enterica serovar Choleraesuis]
 gi|312192416|gb|ADQ43902.1| integrase/recombinase [Edwardsiella tarda]
          Length = 363

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 43/360 (11%), Positives = 104/360 (28%), Gaps = 63/360 (17%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHE----STFIPAYMSALTGSTPKRE 59
           ++ LPP           I Y  R+     I +P              ++ AL+G      
Sbjct: 22  TVSLPP-----------IFYAARRTEPDMILIPDDEPELSLPAASEEFLPALSGENAPVS 70

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK-----I 114
                             Y  S +    +  SR +  S+ + +    G           +
Sbjct: 71  PAR--------------AYLLSLN----SHRSRQTMASFLNIVAVMLGAASLESCSWGSL 112

Query: 115 TTKHIRSGVESRKHTPSSA---IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
              H+ +  E  + T  +      +L++++ + K A     + +     +   +      
Sbjct: 113 RRHHVMAVTELLRDTGRATATVNTYLSALKGVAKEAWMLRLMDVESFQHIRAVRNLRGSR 172

Query: 172 ----RPWTKEDMQQFKSFWSE-----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222
               R   + +++   +         G++       +L  GLR S+     ++ +     
Sbjct: 173 LPSGRALPQGEIRALFAVCEADRSCLGARDAAMLAVILGCGLRRSEVVSLDLRDVVTQDR 232

Query: 223 SIKTQKTGTIITVELPDG-----FMKLLAMTPIGKETFFINNDKQ-------KMNATQFS 270
           +++    G    +              +               ++       ++      
Sbjct: 233 ALRVLGKGNKERLAYVPAGAWQRLQIWIDEIRGETPGPLFTRIRRFGDVTLNRLTDQAVY 292

Query: 271 IWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              + +  +AG+   S H +R+  AT   D G     +    G  +V   + Y +  ++ 
Sbjct: 293 HILQVRQGQAGITKCSPHDLRRTFATAMLDNGEDLITVKDAMGHASVTTTQQYDRRGEQR 352


>gi|299148773|ref|ZP_07041835.1| integrase [Bacteroides sp. 3_1_23]
 gi|301311632|ref|ZP_07217558.1| integrase [Bacteroides sp. 20_3]
 gi|15072714|emb|CAC47921.1| integrase protein [Bacteroides thetaiotaomicron]
 gi|298513534|gb|EFI37421.1| integrase [Bacteroides sp. 3_1_23]
 gi|300830373|gb|EFK61017.1| integrase [Bacteroides sp. 20_3]
          Length = 411

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 47/272 (17%), Positives = 98/272 (36%), Gaps = 29/272 (10%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQ------IIRKSGDFDYRKITTK---HIRSGVESR 126
            +Y K    G  A  + + + + +        I     D   +++T          + + 
Sbjct: 118 EDYEKQVEAGMKAKGTLLKYRTVYKHLQEFLTIRYHVKDIALKELTPAFISDFEMFLRTD 177

Query: 127 KHTPSSAIQFLTS-MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           KH  ++ +      +R +   A+  E++  +P    E  K +T      TKE+++     
Sbjct: 178 KHCCTNTVWLYVCPLRTMVFIAINNEWLTRDPFREYEIKKEETT-RSFLTKEEIRLLMEG 236

Query: 186 WSEGSQPRLAFEFLLY---SGLRCSDSCRAGVQHLQN-----NIFSIKTQKTGTIITVEL 237
             + ++  L  +  L+   +GL  SD      ++++         +I  QKTG +  + L
Sbjct: 237 KLKNAKQELYRDLYLFCAFTGLSFSDMRNLTDENIRTYFDEHEWININRQKTGVVSNIRL 296

Query: 238 PDGFMKLL--AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFS 293
            D   +++       G    F                 +A A + G+ K  + H  R  +
Sbjct: 297 LDIANRIIGKYRGLCGDGRIFPVPH-----YNTCLAGIRAVAKRCGITKHITWHQSRHTA 351

Query: 294 AT-ISADAGATAHELMATYGWKTVDQAETYTK 324
           AT +    G     + +  G K++   + Y K
Sbjct: 352 ATTVFLSNGVPIETVSSMLGHKSIKTTQIYAK 383


>gi|323166606|gb|EFZ52366.1| integrase [Shigella sonnei 53G]
          Length = 371

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/189 (17%), Positives = 69/189 (36%), Gaps = 14/189 (7%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--K 127
           T+   I  Y+       ++ N+     +  + I  K G+    +ITT+HI   ++     
Sbjct: 75  TMADWIERYKTILIRRKVSRNTYKIRANQLETIKEKLGEILLTEITTRHIAEFLDLWIEG 134

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ-QFKSFW 186
              + A    + +  +F+ A+ +  ++ NP      PK         T+E ++ +  +  
Sbjct: 135 GKNTMAGSMRSVLSDMFREAIVEGRISQNPVTPTRAPKIVV------TRERLKLKIYNCI 188

Query: 187 SEGSQPR-----LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241
            E +        LA +  L +G R  D        + ++   ++  KTG +I + L    
Sbjct: 189 REAADQLPAWFPLAMDLALVTGQRREDITNMRFSDIYDDRLHVRQIKTGMMIAIPLSLSL 248

Query: 242 MKLLAMTPI 250
                    
Sbjct: 249 PVAGLRLGT 257


>gi|320528018|ref|ZP_08029184.1| site-specific recombinase, phage integrase family [Solobacterium
           moorei F0204]
 gi|320131644|gb|EFW24208.1| site-specific recombinase, phage integrase family [Solobacterium
           moorei F0204]
          Length = 346

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 56/294 (19%), Positives = 104/294 (35%), Gaps = 29/294 (9%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT---KHIRSGVESRK 127
            + L + Y  +     +  ++        D  +    D D R IT    +  R  +  + 
Sbjct: 56  FRTLATTYFAT---LEVTRSTHDLRMRRLDTYMSLLLDQDVRDITKPIMQEWRVWLSEQD 112

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP---WTKEDMQQFKS 184
            + ++    LT  + +F++   Q Y   +P + +   K+K   ++    WT ++  QF  
Sbjct: 113 ISSTTKNNILTLCKSIFRFGF-QAYGLPDPAVVLRPFKKKPTEVKTMQVWTIDEFNQFI- 170

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIK-----------TQKTGTI 232
           F  +       F  L ++G+R  ++       L  NN  SI              K    
Sbjct: 171 FVVDNPVYHALFRLLFWTGMRRGEALALTRDDLLPNNQISINKSFRRRIDGIGPTKNAAS 230

Query: 233 ITVELPDGFM-KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVR 290
           +     D    + L       E  +I   KQ ++    +  F  K   AGV +   H +R
Sbjct: 231 VRTITVDELTYRELEAICAHAEGPYIFGGKQPISTQTVNQLFDRKVALAGVKRIRLHDLR 290

Query: 291 KFSATISA-DAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSV 342
              A+I   D   +   + A  G   V    + YT   D+    +    +I+S+
Sbjct: 291 HSHASILLNDPTISVAAVSARLGHSNVATTMKVYTHVIDKATKSLN--DKIASM 342


>gi|300726813|ref|ZP_07060243.1| integrase [Prevotella bryantii B14]
 gi|299775926|gb|EFI72506.1| integrase [Prevotella bryantii B14]
          Length = 431

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 47/292 (16%), Positives = 94/292 (32%), Gaps = 29/292 (9%)

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLT 138
           R    + +L  + R   E   ++ ++        +   +  R  ++ R    S+    L 
Sbjct: 123 RAEGTYLNLFYSDRNLREFVENKGVQDISIGTITEDLFEEYRFFLKKRGLKASTINSNLC 182

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WSEGSQPRLA 195
            +  L   AV +  +  NP  + +  K + + IR   K D+ +  +      E    RL 
Sbjct: 183 WLSRLMFRAVSKRIIRCNPFENAKYEKEEKK-IRFLQKSDVMKLMAMRMNDKETELARLM 241

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQN---NIFSIK--TQKTGTIITVELPDGFMKLL----- 245
           F F  ++GL  SD      +H+Q        I+   QKT     V L      ++     
Sbjct: 242 FVFSCFTGLAISDMENLEYKHIQTAAVGQMYIRKERQKTKVEFIVPLHPIAEAIISHCQK 301

Query: 246 --------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSAT 295
                          +    + +  +                 G+    S H  R    T
Sbjct: 302 EQERSEVQQTVKEKDDHLVFHRNCSRSVMDTKLSIVGKAC---GIRQRLSFHMARHTFGT 358

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
           +S  AG     +    G  ++   + Y +  D+     ++  R+ +   + +
Sbjct: 359 MSLSAGIPIESIAKMMGHASISSTQVYAQVTDKK--ISEDMDRLIAKQSAKE 408


>gi|206577681|ref|YP_002237145.1| site-specific recombinase, phage integrase family [Klebsiella
           pneumoniae 342]
 gi|206566739|gb|ACI08515.1| site-specific recombinase, phage integrase family [Klebsiella
           pneumoniae 342]
          Length = 416

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 48/325 (14%), Positives = 111/325 (34%), Gaps = 28/325 (8%)

Query: 49  SALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSG 107
           +A      ++    +  K   T      ++ +      +A  +R    + F++ +  K G
Sbjct: 93  AAGKSPAKEKARDKARVKDAETFGAWAEKWLRGYQ---MAEKTRDMRRATFERELKPKFG 149

Query: 108 DFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165
           +    +IT + +R+  ++   +  P++A+     +  +F+WA+ +     NP   V    
Sbjct: 150 NQKLTEITHEDLRALADAIVERGAPATAVLCREIVMQVFRWAIERGQKVENPADLVRPST 209

Query: 166 RKT--EGIRPWTKEDMQQFKSFWS-EGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQ-- 218
                   R  T +++     +    G+ P  R A + LL + +R S+   A    +   
Sbjct: 210 IAKFEPRDRALTPDEIALMYQYMERIGTTPSIRAAAKLLLLTMVRKSELTNATWSEINFT 269

Query: 219 NNIFSIKTQ--KTGTIITVELPDGFMKLLAMTPI---GKETFFINNDKQ--KMNATQFSI 271
           + +++I  +  K      V L    + +         G E    +       M++   + 
Sbjct: 270 DALWTIPKERMKRRNPHLVFLSRQTLDIFIALKTFAGGSEYVLPSRYDSDLPMSSATLNQ 329

Query: 272 WFKAKATKAGVNKS------AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
                   A            H +R+ ++T+  +AG     +      +       Y K 
Sbjct: 330 VLTLTYRLAQKEGQSLGKFGPHDLRRTASTLLHEAGYNTDWIEKCLAHEQKGVRAVYNKA 389

Query: 326 --ADRIRLGIKNSRRISSVVDSDDP 348
              D+ R  +++   +        P
Sbjct: 390 EYRDQRRAMLQDWADMIDEWTIRKP 414


>gi|186474604|ref|YP_001863575.1| integrase family protein [Burkholderia phymatum STM815]
 gi|184198563|gb|ACC76525.1| integrase family protein [Burkholderia phymatum STM815]
          Length = 309

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/263 (12%), Positives = 82/263 (31%), Gaps = 42/263 (15%)

Query: 97  SYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAIN 156
                  R  GD    ++  + + + +       +  +Q    +  L+++A+ +   +++
Sbjct: 26  KVLRFYCRTMGDVTVEEVRPESVLAFIAGCGPVTARWVQNYRILGRLYRYAIGRGLASVS 85

Query: 157 PCLSVERPKRKTEGIRPWTK-----EDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCS 207
           P      P +      P T       ++++  +  +         R     L  +G+R  
Sbjct: 86  P-----LPAQIPRLPPPLTPYIYSVAELERLLTATAVLPKQALTMRTLLLLLYGTGMRIG 140

Query: 208 DSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLA---------MTPIGKETFF 256
           ++    +Q +     +  I+  K      V +      +LA           P G  + F
Sbjct: 141 EALSLTIQDVDLLTRVIIIRDTKFYKTRMVPIGPRLTMVLADYLGHRSQLPLPAGDSSVF 200

Query: 257 INND-KQKMNATQFSIWFKAKATKAGVNK--------SAHGVRKFSATI----SADAGAT 303
           ++     ++     +  F+     A + +          H +R  +A         AG  
Sbjct: 201 LSTRTGHRLTYAWINGQFRRVRQAADIRREDGARYQPRIHDIRHTAAVHRIIAWYRAGDD 260

Query: 304 AH----ELMATYGWKTVDQAETY 322
                 +L   +G   V   + Y
Sbjct: 261 VQRLLPQLATYFGHVGVASTQQY 283


>gi|114319153|gb|ABI63576.1| integrase [Klebsiella pneumoniae]
          Length = 304

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 39/296 (13%), Positives = 90/296 (30%), Gaps = 62/296 (20%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129
           ++ + R+   +   ++ +  ++  +    IR  G      + +  + + +      RK +
Sbjct: 16  VLDQLRERIRYLHYSLPTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75

Query: 130 PSSAIQFLTSMRVLFK--WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            S+  Q L ++   +         ++       + RP+         T +++ +   F  
Sbjct: 76  VSTHRQALAALLFFYGKVLCTDLPWLQ-----EIGRPRPSRRLPVVLTPDEVVRILGFL- 129

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
           EG   RL  + L  +G+R S+  +  V+     +    ++  K      + LP+     L
Sbjct: 130 EGEH-RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSL 188

Query: 246 AMTPIGKETFFINN---------------------------------------------D 260
                    +++ +                                              
Sbjct: 189 REQLSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVR 248

Query: 261 KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWK 314
           +  M    F   FK    +AG+ K  + H +R   AT    +G     +    G  
Sbjct: 249 RHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHS 304


>gi|254443000|ref|ZP_05056476.1| integron integrase subfamily, putative [Verrucomicrobiae bacterium
           DG1235]
 gi|198257308|gb|EDY81616.1| integron integrase subfamily, putative [Verrucomicrobiae bacterium
           DG1235]
          Length = 485

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 57/335 (17%), Positives = 97/335 (28%), Gaps = 58/335 (17%)

Query: 43  FIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI 102
           F  A + A   +        S        +  + E+         + ++ +S+  +    
Sbjct: 133 FREAVLHAEVVAKEIPSESVSAEHVSGEGEVWLEEFLCELRRRKYSYSTEVSYLQWIRAF 192

Query: 103 IRKSGDFDYRKITTKHIRSGVE----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158
               G    R+     +R  ++     R+ + SS  Q L ++  L+K   R E       
Sbjct: 193 AVFLGSNALREFGRLDVRRFLDYLALERRVSASSQRQALNAVVFLYKQVFRVELGDF--- 249

Query: 159 LSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218
               R K KT       K +M++            L  +    +GLR S+ CR  V+ L 
Sbjct: 250 SDYLRAKSKTNLPTVLGKGEMRRLLGEMKGN--RLLMAKLQYGTGLRVSELCRLRVKDLD 307

Query: 219 --NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK-------------QK 263
                  +   K      + LP    K L          F  +               +K
Sbjct: 308 FELGKVLVVGGKGNKDRALPLPKKLAKELEQQLASAREVFEKDRSDEVAGVYLPEALERK 367

Query: 264 MNATQ-----FSIW---------------------------FKAKATKAGVNK--SAHGV 289
            +        F +W                               A+KA + K  S+H +
Sbjct: 368 FSKAGTDWKWFWVWPSRELGVDPRSDVLRRHHVLPRSYQAAISRAASKAEIQKRVSSHAL 427

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           R   AT   D+G     L    G K +   + Y  
Sbjct: 428 RHSFATHLLDSGINLRTLQELMGHKDIKTTQVYLH 462


>gi|255015298|ref|ZP_05287424.1| integrase [Bacteroides sp. 2_1_7]
          Length = 310

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 43/296 (14%), Positives = 98/296 (33%), Gaps = 39/296 (13%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVES 125
           ++  +S+ R+   +     +S  S++   +  I+ SG       D  K       + +  
Sbjct: 10  VRRYMSQLREEKRY-----SSAKSYQDALNSFIKYSGTENISYSDINKANLHRYEAYLLE 64

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINP------CLSVERPKRKT---EGIRPWTK 176
           +    ++   ++  +R ++  A+        P         VE  ++K+   E       
Sbjct: 65  KGCMCNTVSTYMRRIRCVYNKAIEDGDAEYIPGLFQGVFTGVESKRKKSLSLENQHKLMT 124

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
             ++             +      Y+G+   D      ++++N I     QKTGT + +E
Sbjct: 125 VKVES----EVLRETQLVVCLLFQYAGMSFVDFAHLKERNIKNGILDYNRQKTGTPMRLE 180

Query: 237 LPD----GFMKLLAMTPIGKETFFINNDKQKMNAT----------QFSIWFKAKATKAGV 282
           + D       +L+          F      K              +F+   KA    AG+
Sbjct: 181 ILDTAELMRKELMGDKRPASGYLFPFLSGTKTGYEAYLEYNAALSRFNRNLKALKKAAGI 240

Query: 283 --NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
             + +++ +R   A    +       +    G K++   + Y +     ++   NS
Sbjct: 241 ASDVTSYTIRHSFAMALKEQNVPIEMISELLGHKSIKTTQIYLRSFSLEKMTEVNS 296


>gi|254039131|ref|ZP_04873181.1| integrase [Escherichia sp. 1_1_43]
 gi|226838567|gb|EEH70596.1| integrase [Escherichia sp. 1_1_43]
          Length = 326

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 45/307 (14%), Positives = 100/307 (32%), Gaps = 23/307 (7%)

Query: 26  RKGHGRRIRLPYPHESTFI--PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAH 83
           R   G+RIR  +  ++  +    Y  A       ++     R    TL  L+  + K  H
Sbjct: 18  RGRDGKRIRRKFERKAEAVAFERYTIAYA----SQKEWAGQRADRRTLSELLDIWWK-YH 72

Query: 84  WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK---HIRSGVESRKHTPSSAIQFLTSM 140
             +    ++    ++  + I   GD    +++ +     RS       + ++  + +  +
Sbjct: 73  GQNHEHGTKEF--NHLLKTISGIGDIPVSRMSKRALMDYRSMRLRDGISAATINRDMYRL 130

Query: 141 RVLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199
             +F   ++  E+   +P   +         +    K ++++  +         L     
Sbjct: 131 SGMFTKLIQLDEFSGQHPIHGLPPLAEANPEMTFLEKAEIEKLLNVLD--GDDLLVALLC 188

Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN 259
           L +G R ++        + N   +    K G   TV + +   K +      K       
Sbjct: 189 LSTGGRWTEVATLKPAQITNCRVTFLKTKNGKKRTVPISEELEKKVKEEASAKLF----- 243

Query: 260 DKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
              K++  +F    +        N++ H +R   A+     G     L    G  ++ Q 
Sbjct: 244 ---KVDYEKFCGILRRVKPDIPPNQATHILRHTFASHFMMNGGNIIALQQILGHASIQQT 300

Query: 320 ETYTKGA 326
             Y   A
Sbjct: 301 MAYAHLA 307


>gi|163753949|ref|ZP_02161072.1| tyrosine type site-specific recombinase [Kordia algicida OT-1]
 gi|161326163|gb|EDP97489.1| tyrosine type site-specific recombinase [Kordia algicida OT-1]
          Length = 404

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 42/281 (14%), Positives = 100/281 (35%), Gaps = 22/281 (7%)

Query: 77  EYRKS--AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
           EY +S    +     +++    S + +          + I           + H   +  
Sbjct: 128 EYTQSTMNKFIEAKSHTQDFIRSKYKRSDLLLESLSTKFIEDFDFY-LKSEKGHKQITIN 186

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ--- 191
           + +  +R + K A+ + Y+  +P L  + PKR    +     +++ + + +    ++   
Sbjct: 187 KSIQRVRKIIKLAIAEGYLQKDPFLMYK-PKRYERKVVYLDTKELTRLEEYSFAQTRLSQ 245

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHL-----QNNIFSIKTQKTGTIITVELPDGFMKLLA 246
            R  F F  Y+GL  ++      +H+      N    +  +KT   ++V L      +L 
Sbjct: 246 VRDMFVFCCYTGLAYAEMSVLSDKHIIKGFDGNEWIHMYRKKTNAKVSVPLLPTAKAILT 305

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSA-TISADAGAT 303
                 E   +      ++  +F+ + K  A    ++K    H  RK  A T+       
Sbjct: 306 RYKDISENKLL----PVISNQKFNSYLKEIAAIVDIDKRLTHHIARKTFATTVLLYNDVP 361

Query: 304 AHELMATYGWKTVDQAE-TYTKGADRIRLGIKNSRRISSVV 343
              +    G   +D  +  Y K   +     ++ +++ + +
Sbjct: 362 MEIVSELLGHSKLDITQRHYAKVVQKK--VSEHIQKLENKL 400


>gi|93569004|gb|ABF13469.1| DNA integrase [Arcanobacterium pyogenes]
          Length = 360

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 48/292 (16%), Positives = 96/292 (32%), Gaps = 40/292 (13%)

Query: 69  TTLKWLISEY---RKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVE 124
            T+  L +++     +     +  ++ ++ E    D+II   G     +I    +     
Sbjct: 53  GTMDMLFADFVDVYATEIRPRIREHTWLTKEYMIKDKIIPFFGKMRMSEIKPIDVVRWQN 112

Query: 125 SRKH------TPSSAIQFLTS---MRVLFKWAVRQEYVAINPCLSV-ERPKRKTEGIRPW 174
                      P SA    T    +  +F  A R   +  NPC  V +   +K   +  W
Sbjct: 113 QLIDHKDANGKPYSATYLRTINNQLNAIFNHAERYYDLTGNPCRKVTKMGSKKGGEMNFW 172

Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---------------N 219
           TK++  +F     +      AFE L ++G+RC +                          
Sbjct: 173 TKQEYLRFSEAIMDKPLSFYAFEVLYWTGIRCGELLALTPSDFIFETSELSITKSYQRLK 232

Query: 220 NIFSIKTQKTGTIIT-VELPDGFMKLLAMTPIGKETFFINNDKQK-----MNATQFSIWF 273
            I +I   KT   +  + +P    + +          F ++         +     +   
Sbjct: 233 GIDTITDPKTPNSVRRIAMPKFLAEEMKEYLED----FRDDLGPHDRIFDVTKYYLTHEM 288

Query: 274 KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +    ++GV +   H +R    ++  D G TA  +    G +++D    Y  
Sbjct: 289 ERGCKESGVKRIRIHDLRHSHISLLIDMGFTALAIADRVGHESIDITYRYAH 340


>gi|206577697|ref|YP_002238964.1| site-specific recombinase, phage integrase family [Klebsiella
           pneumoniae 342]
 gi|206566755|gb|ACI08531.1| site-specific recombinase, phage integrase family [Klebsiella
           pneumoniae 342]
          Length = 405

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/251 (16%), Positives = 94/251 (37%), Gaps = 24/251 (9%)

Query: 92  RISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQE 151
           +++   + + I    G+    + T  H  +  +       +  Q L  M+  F++   + 
Sbjct: 130 KVNRRDFNNHIAPVLGNMIVDQTTKAHWLNLFDGMGRRVVTG-QMLGLMQRTFRFCSNRG 188

Query: 152 YVAINPCLSVERPKRKTEG------IRPWTKEDMQQFKSFWSEGS-QPRLAFEFLLYSGL 204
            + +NP   +E  +R   G       R  + E+++   +   E   + +L  +FL+ +G 
Sbjct: 189 VINVNP---IESLRRSDVGLTASVKDRRLSDEEIKTVWNILPELKYRQQLIMKFLIMTGC 245

Query: 205 RCSDSCRAGVQHLQNNIFSIK----TQKTGTIITVELPDGFMKLLAM---TPIGKETFFI 257
           R ++   A  +    +  +        KTG  +   LP+  ++++     T + K    +
Sbjct: 246 RSTEIRTARWEWFDFHEQTWTIPASDYKTGKSVRRALPEAVVRMMLAEKETSVSKHVVTL 305

Query: 258 NNDK-----QKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATY 311
           +  +     +       +++      K G+   S H +R+  AT  ++ GA  H +    
Sbjct: 306 SRYRGPEDDRPPLQPNVALFSAQIIAKTGMKPWSLHDLRRTVATRLSELGAPPHVVEKLL 365

Query: 312 GWKTVDQAETY 322
           G         Y
Sbjct: 366 GHHMAGVMARY 376


>gi|146319950|ref|YP_001199661.1| hypothetical protein SSU98_0101 [Streptococcus suis 98HAH33]
 gi|145690756|gb|ABP91261.1| unknown protein [Streptococcus suis 98HAH33]
          Length = 318

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 40/279 (14%), Positives = 90/279 (32%), Gaps = 47/279 (16%)

Query: 90  NSRIS-FESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP-----------SSAIQFL 137
           +++ + +E +   I     + +  K++ +HI    E  K  P           ++  + +
Sbjct: 26  STQRNNYERH---IKPYFINTNLNKLSYEHIFEFREYLKIKPKKQNDSSTLSHNTVNKIM 82

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR-LAF 196
             ++ +F   VR+  +  NP  ++ +       I  W  E+  +F+   +       L F
Sbjct: 83  ILLKKIFDTGVRKSLIDKNPVENIRKLPISKPTINFWNVEEFNEFRKLITSDEISYDLFF 142

Query: 197 EFLLYSGLRCSDSCRAGVQHLQ---------------NNIFSIKTQKTGTIIT-VELPDG 240
               ++G+R  +        +                N    I + KT      + +   
Sbjct: 143 TIAFFTGMRLGEIVALTWYDINLITNSIHITKTAYFVNGTNHINSTKTRAGTRRITINHK 202

Query: 241 FMKLLAMTPIGKETFF--INNDKQ----------KMNATQFSIWFKAK-ATKAGVNK-SA 286
             ++LA     ++        D +           M        FK   A    + K   
Sbjct: 203 LARMLADWKEKQKDLLKEFTTDTENLQVIQSTPLPMTKNMIDKKFKQILARNDYLKKIRI 262

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
           H +R   A++  + G     +    G  ++    +TY+ 
Sbjct: 263 HDLRHSHASLLINQGEDYLVVKERLGHASITTTIDTYSH 301


>gi|319775691|ref|YP_004138179.1| Prophage integrase [Haemophilus influenzae F3047]
 gi|319896769|ref|YP_004134963.1| prophage integrase [Haemophilus influenzae F3031]
 gi|317432272|emb|CBY80624.1| Prophage integrase [Haemophilus influenzae F3031]
 gi|317450282|emb|CBY86498.1| Prophage integrase [Haemophilus influenzae F3047]
          Length = 341

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/239 (15%), Positives = 90/239 (37%), Gaps = 15/239 (6%)

Query: 98  YFDQIIRKSGDFDYRKITTKHIRSG------VESRKHTPSSAIQFLTSMRVLFKWAVRQE 151
           +      + G+     +T++ I++          +  +P++  ++ +S+      A +  
Sbjct: 83  HAKYWRDEIGNKLLSSLTSEDIQNAIPTHVVRTGKILSPATQNRYRSSIMRAINLAKQAG 142

Query: 152 YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCR 211
           ++ + P   + +     + IR  T+++ ++     +      +  +F L +G R ++   
Sbjct: 143 WIDVVP--YIAKNSEPKKRIRWITEKEAERLLDSLNLNWMKDVC-QFALLTGARMTEILS 199

Query: 212 AGVQHLQ-NNIFSIKTQ---KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT 267
                +   N  +I T    K+G   ++ L D  + L+      + + ++ +        
Sbjct: 200 MTWDKINFANKMAIVTGDIAKSGRGRSLPLSDDAINLIKERMKYQVSPYVFHSGTGKLRD 259

Query: 268 QFSIW-FKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             S   FK    +A + N   H +R   A+     G     L    GW+T++  + Y  
Sbjct: 260 DISRRDFKRALQRANIKNFRFHDLRHTWASWHIQRGTPLMVLKELGGWETIEMVQKYAH 318


>gi|261346812|ref|ZP_05974456.1| site-specific recombinase, phage integrase family [Providencia
           rustigianii DSM 4541]
 gi|282565212|gb|EFB70747.1| site-specific recombinase, phage integrase family [Providencia
           rustigianii DSM 4541]
          Length = 325

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/245 (16%), Positives = 83/245 (33%), Gaps = 17/245 (6%)

Query: 96  ESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEY 152
                + I+  G+    ++  + +     +R       ++  + +  +  +F      E 
Sbjct: 83  RMQLRKTIKLLGNPTLNQLGKQTLLEHRGNRLMSGIKATTINRDMYRLSGMFSALETLEL 142

Query: 153 VA-INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL-LYSGLRCSDSC 210
           +   NP   +   K +T  I   ++   +Q  S  +E +     F  L L +G R  +  
Sbjct: 143 LDYKNPLNGLPPLKEETPEIIFLSE---EQIISLLNEFTGDYKLFALLCLSTGARWGEGA 199

Query: 211 RAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS 270
               + +QN   +    K G    + + D   + +  T      F IN          F 
Sbjct: 200 ALHSEQVQNGRVTFLKTKNGKKRIIPISDKLSEQIK-TKDSGPLFDIN-------YETFR 251

Query: 271 IWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRI 329
           +  +    +    ++ H +R   A+     G     L    G  +++Q   Y   A D +
Sbjct: 252 LALRNLFPELPRGQATHVLRHTFASHFVMNGGNIVALKEILGHASINQTMVYAHLAPDYL 311

Query: 330 RLGIK 334
            L IK
Sbjct: 312 ELAIK 316


>gi|144899961|emb|CAM76825.1| phage-related integrase [Magnetospirillum gryphiswaldense MSR-1]
          Length = 396

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 53/358 (14%), Positives = 112/358 (31%), Gaps = 92/358 (25%)

Query: 54  STPKREYINSPRKKPTTLKWLISEYRK--SAHWGSLAVNSRISFESYFDQIIRKSGD-FD 110
               +   ++P     T+K +   Y    S  +      ++I+++S +  +I   G+   
Sbjct: 16  EATPQPEPSAPPIADRTIKQVYEGYMADLSRQFVG---KTKIAYDSIYKMLIEVIGENTP 72

Query: 111 YRKITTKHIRSGVESRKHTPSSA-----------------------------IQFLTSMR 141
            R++T +  R  +   +  P++A                               ++  + 
Sbjct: 73  IRQLTRERCRGVLNLLRQLPANAVKKYPKLTLKQAAERGSLDGAPTISAGTVNGYIQKLS 132

Query: 142 VLFKWAVRQEYVAINPCLSVE-----RPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---- 192
            L  W+V + Y+  NP   ++     + K K +   PW  + +  F +    G +     
Sbjct: 133 ALLSWSVNEGYLDKNPARGLKVVDTVKRKDKRQPFVPWQLQKI--FDAPLYRGCRNDGAG 190

Query: 193 ------------RLAF-EFLLYSGLRCSDSCRAGVQ---------------HLQNNIFSI 224
                       R       L+SG+R ++ C+  V+                ++N +   
Sbjct: 191 YSSPGNDKPRRGRFWVPLIALFSGMRLNEICQLNVEDMRVVDGIHCFIVTTDVENGVADK 250

Query: 225 KTQKTGTIITVELPDGFMKL------LAMTPIGKETFF--INNDKQKMNATQFSIWFK-- 274
           K + +     + +    +++              E  F  +   K    +  FS +F   
Sbjct: 251 KLKTSSGERLIPVHPELIRIGFLEHVSERKNSRGEKLFPDLTVAKSGYYSDTFSKFFANF 310

Query: 275 --AKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWK-----TVDQAETYTKG 325
                 KA    S H  R        +A       +A  GW        + A+ Y +G
Sbjct: 311 LDKACAKA-PRTSFHSFRHNFRDALREARVDREIALALGGWAGDSADDDETADNYGRG 367


>gi|187779931|ref|ZP_02996404.1| hypothetical protein CLOSPO_03527 [Clostridium sporogenes ATCC
           15579]
 gi|187773556|gb|EDU37358.1| hypothetical protein CLOSPO_03527 [Clostridium sporogenes ATCC
           15579]
          Length = 308

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 46/271 (16%), Positives = 91/271 (33%), Gaps = 34/271 (12%)

Query: 77  EYRKSAHWGSLAVNSRISFESY--FDQIIRKSGDFDYRKITTKHIRS---GVESRKHTPS 131
           +Y            +  S E +  ++ I   + D + +++T + I      +    +  +
Sbjct: 30  DYLNYCTSIGQREKTIESKEKFGKYELIKVVNLDSNIKELTKEKIEKHIINMRKEGYKGN 89

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS- 190
           +   ++  MR    +     Y+      +V+ P    E    +T+E++ +     S  + 
Sbjct: 90  TYQTYVIKMRAFLSYCFNNNYLTK---FTVKIPNILLEKKEVYTEEEVIKLLKKPSINTC 146

Query: 191 -----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMK 243
                +      FLL +G R        V+ +    +    +  KT   ITV L +    
Sbjct: 147 LVGDFRSWAICSFLLSTGCRAETLLNVHVEDVNFSTDSILFRHMKTKRQITVPLSNTLKV 206

Query: 244 LL-----AMTPIGKETFFINNDKQKMNATQ----FSIWFKAKATKAGVNKSAHG---VRK 291
            L      M    ++  F   + +KM           +FK +      N   HG    R 
Sbjct: 207 NLMEYIQRMGLKQEDYLFPLLNGEKMKYDTCHQNLKNYFKHR------NVKFHGVNTFRN 260

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETY 322
             AT++   GA  + +    G   +   E Y
Sbjct: 261 TFATMALKNGAGIYLIQKCLGHADIKMTERY 291


>gi|332180870|gb|AEE16558.1| integron integrase [Treponema brennaborense DSM 12168]
          Length = 398

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 44/309 (14%), Positives = 90/309 (29%), Gaps = 62/309 (20%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR----SGVESRKHTP 130
           I++Y         +  +  ++  +     ++        ++   I       V  +  + 
Sbjct: 85  ITKYVTLLEAKHYSRRTVQAYAKWLIAFGKRFASIPSALLSQTEINLFLTELVTEKNVSA 144

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCL--SVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           S+  Q L ++   F++    E     PC   SV R K+       ++K++++      S+
Sbjct: 145 STQNQALAALLFYFRYIKGTE-----PCNLASVIRAKKTVHIPVVFSKDEVRAIFDQLSD 199

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLA 246
             +  L  + L  +G+R S+     +Q +   +N+  I+  K        LP    K + 
Sbjct: 200 --EKLLIAQLLYGTGMRLSECLCLRIQDIDFAHNMIIIRNGKGAKDRRTMLPHILEKKIR 257

Query: 247 MTPIG----------------KETFFINNDKQKMNATQFSIWF----------------- 273
              +                    F +       +A     W                  
Sbjct: 258 AHIVSVKQLHQADIADGWGVVTLPFALRKKYSGASADFAWQWVFPQKNRWKNTDTGMQGR 317

Query: 274 ------------KAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQA 319
                       +     AG+ K    H  R   AT   + G     +    G   V   
Sbjct: 318 YHIDASIMERAVQKAVRDAGIYKRGNCHTFRHSFATHLLENGYDIRTVQELLGHSDVKTT 377

Query: 320 ETYTKGADR 328
             YT   ++
Sbjct: 378 MIYTHVLNK 386


>gi|323174617|gb|EFZ60238.1| phage integrase family protein [Escherichia coli LT-68]
          Length = 354

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 26/246 (10%), Positives = 75/246 (30%), Gaps = 46/246 (18%)

Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
            ++   ++  +  +   ++T++  +F++A    Y+  NP   ++  KR      P T+++
Sbjct: 64  TKNKAAAKGRSVVTVNYYMTTIAGMFQFAADHGYLEANPFQGIKPLKRARAEPDPLTRDE 123

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII----- 233
             +         Q +  +   +Y+G+R  +      + +     +I  ++  T +     
Sbjct: 124 FIRLIDAC-RHQQTKNLWSLAVYTGMRHGELVSLAWEDIDLKAGTITIRRNYTKLGEFTL 182

Query: 234 ----------------TVELPDGFMKLLAMTPIGKETFFINNDKQK-------------- 263
                            + +     ++  +         +    +               
Sbjct: 183 PKTEASTNRVVHLIQPAISVLKNQAEMTRLGKQHHIKVQLREYGRSVNHECTFVFNPQVV 242

Query: 264 ---------MNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGW 313
                             ++    +AG+ ++ A+  R   A  S  AGA    + +  G 
Sbjct: 243 RKSKQVGFIYKVDSIGDSWETAIKRAGIRHRKAYQSRHTYACWSLSAGANPSFIASQMGH 302

Query: 314 KTVDQA 319
            +    
Sbjct: 303 ASAQMV 308


>gi|315930520|gb|EFV09564.1| phage integrase family protein [Campylobacter jejuni subsp. jejuni
           305]
          Length = 187

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 27/185 (14%), Positives = 70/185 (37%), Gaps = 18/185 (9%)

Query: 175 TKEDMQQFKSFWSEGS------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSI 224
           +KE++++F              + +L  + ++++G+R S++    +  +       I  I
Sbjct: 2   SKEELKKFLDAIENADFKNNTIRNKLIIKIIIFTGIRVSEAINIKMGDISEENDLYIIRI 61

Query: 225 KTQKTGTIITVE----LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280
           + +     + +     + D    +           F+N     +  +  S   +    +A
Sbjct: 62  RAKGNKYRVVMIKKELIYDLLKNVSINYISKDALLFVNKKGTPLTQSYVSRIVEQLLFRA 121

Query: 281 GVNKS---AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNS 336
           G+ K    AH +R   AT+          +    G  +++ +  YT    D+++L  + +
Sbjct: 122 GIRKQKNGAHMLRHTFATLLYKKQKDLVLVQEALGHASLNTSRIYTHFDNDKLKLAAQVA 181

Query: 337 RRISS 341
           + +S 
Sbjct: 182 KELSD 186


>gi|281424486|ref|ZP_06255399.1| integrase [Prevotella oris F0302]
 gi|281401323|gb|EFB32154.1| integrase [Prevotella oris F0302]
          Length = 410

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/230 (16%), Positives = 81/230 (35%), Gaps = 20/230 (8%)

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
              P++A + + + + +     +   +  +P L+  R   +       T E++ +  +  
Sbjct: 178 GQNPNTATKTMKTFKTITILGRKMGVIHHDPFLN-HRFHLEPVNRGFLTDEEILKIANKD 236

Query: 187 SEGSQ---PRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPD 239
               +    R  F F  ++GL   D      +++           K QKT     V L D
Sbjct: 237 LGIQRLELVRDLFVFSCFTGLAYIDVANLTPENIVTLDDKQWIMTKRQKTSVATNVLLLD 296

Query: 240 GFMKLLAMTPIGKETFFINNDKQ--KMNATQFSIWF-KAKATKAGVNK--SAHGVRKFSA 294
               ++       +T+    D +   M   Q +  + K  A   G+ K  + H  R   A
Sbjct: 297 IPKNIIE--KYSGKTY---RDGKLFPMLTNQRTNSYLKEIADICGIKKDLTFHMARHTFA 351

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
           T+S   G +   +    G   +   + Y +  ++      +  +++  +D
Sbjct: 352 TMSLSKGVSMESVSKMLGHTNIKTTQIYARITNKK--IEHDMEQLAGKLD 399


>gi|302865900|ref|YP_003834537.1| integrase family protein [Micromonospora aurantiaca ATCC 27029]
 gi|315502445|ref|YP_004081332.1| integrase family protein [Micromonospora sp. L5]
 gi|302568759|gb|ADL44961.1| integrase family protein [Micromonospora aurantiaca ATCC 27029]
 gi|315409064|gb|ADU07181.1| integrase family protein [Micromonospora sp. L5]
          Length = 352

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 50/147 (34%), Gaps = 13/147 (8%)

Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM----------T 248
             +G+R S++C   V  +      ++   K G    V       + L             
Sbjct: 199 YGTGVRISEACGLDVSDVDQARRVVRVLGKGGRERAVPYGVPAQRALDAWLRDGRPALLA 258

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHEL 307
           P       +     ++N T         A  AGV + + HG+R  +AT   + GA    +
Sbjct: 259 PGSGRALLLGARGGRLNPTTARRIVSGWAGAAGVPRVTPHGLRHSAATHLLEGGADLRAV 318

Query: 308 MATYGWKTVDQAETYTK-GADRIRLGI 333
               G  ++   + YT    +R+R   
Sbjct: 319 QELLGHSSLASTQIYTHVSVERLRAAY 345


>gi|260583149|ref|ZP_05850930.1| prophage integrase [Haemophilus influenzae NT127]
 gi|260093861|gb|EEW77768.1| prophage integrase [Haemophilus influenzae NT127]
          Length = 341

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/239 (15%), Positives = 90/239 (37%), Gaps = 15/239 (6%)

Query: 98  YFDQIIRKSGDFDYRKITTKHIRSG------VESRKHTPSSAIQFLTSMRVLFKWAVRQE 151
           +      + G+     +T++ I++          +  +P++  ++ +S+      A +  
Sbjct: 83  HAKYWRDEIGNKLLSSLTSEDIQNAIPTHVVRTGKILSPATQNRYRSSIMRAINLAKQAG 142

Query: 152 YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCR 211
           ++ + P   + +     + IR  T+++ ++     +      +  +F L +G R ++   
Sbjct: 143 WIDVVP--YIAKNSEPKKRIRWITEKEAERLLDSLNLNWMKDVC-QFALLTGARMTEILS 199

Query: 212 AGVQHLQ-NNIFSIKTQ---KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT 267
                +   N  +I T    K+G   ++ L D  + L+      + + ++ +        
Sbjct: 200 MTWDKINFANKMAIVTGDIAKSGRGRSLPLSDDAINLIKERMKYQVSPYVFHSGTGKLRD 259

Query: 268 QFSIW-FKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             S   FK    +A + N   H +R   A+     G     L    GW+T++  + Y  
Sbjct: 260 DISRRDFKRALQRANIKNFRFHDLRHTWASWHIQRGTPLMVLKELGGWETIEMVQKYAH 318


>gi|153812120|ref|ZP_01964788.1| hypothetical protein RUMOBE_02516 [Ruminococcus obeum ATCC 29174]
 gi|149831775|gb|EDM86861.1| hypothetical protein RUMOBE_02516 [Ruminococcus obeum ATCC 29174]
          Length = 408

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 56/388 (14%), Positives = 116/388 (29%), Gaps = 70/388 (18%)

Query: 19  GKIIYYF-RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISE 77
           G+  Y +     G+R+ +               +           + +K   TL  L   
Sbjct: 26  GRYSYRYTDIRSGKRLTVYAKDLPELREKEKQIVKDLEDNILTDGAIKKL--TLNKLFER 83

Query: 78  YRKSAHWGSLAVNSRISF-ESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF 136
           Y  +     L  ++R ++ +++ +++  + G+    +I   HI+S           A   
Sbjct: 84  YMST---RELKESTRANYLKTWENRVKDEIGNIKVIQILPSHIKSFYSKLS-KAGYAYST 139

Query: 137 LTSMRVLF----KWAVRQEYVAINPCL-SVERPKRKTEGIRPWT---KEDMQQFKSFWSE 188
           +  +  +     + AV  + +  NP   S+    R+ E     T   +E M +F      
Sbjct: 140 IKFINNMIYPALEMAVDDDIIRKNPAKFSISDYGRQAEERIALTVLQQEKMLEFVKNNQV 199

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-------------------NNIFSIKTQKT 229
            +        +L +G+RC +      + +                       F I T KT
Sbjct: 200 YNTYYPMLRIMLGTGVRCGELIGLTWEDVDVRTKAVSIDHQLIYKDLGDGYKFHISTPKT 259

Query: 230 GTII-TVELPDGFMKLLAMTPIGKET---------------FFINNDKQKMNATQFSIWF 273
            + I T+ +     +                           F+    + +  +  +   
Sbjct: 260 DSGIRTIPMTSDVQRAFEEQKKLNFMLQKGKDVEIDGYKGFIFMAKSGRPLMPSAINNIL 319

Query: 274 --------KAKATKAGVNK---------SAHGVRKFSATISADAGATAHELMATYGWKTV 316
                   K +   A             SAH +R  + T  A+       L    G   +
Sbjct: 320 YNIVDAYNKKEVQIAKTEHRNAELLPTVSAHIMRHTACTRMAEKRMDVKVLQYIMGHAHI 379

Query: 317 DQA-ETYTKGADRIRLGIKNSRRISSVV 343
           D   + Y   ++  R+  +   R+ SV 
Sbjct: 380 DVTMDVYNHVSEMSRIESE-ITRLESVA 406


>gi|295092359|emb|CBK78466.1| Site-specific recombinase XerD [Clostridium cf. saccharolyticum
           K10]
          Length = 269

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 45/259 (17%), Positives = 92/259 (35%), Gaps = 18/259 (6%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQ 135
            ++ +     SL+ N+  S+     Q   +  D   +K+    +   +E+ K  P +   
Sbjct: 5   EKFERHLRGTSLSENTISSYMFAIKQYGEQYDDVTQKKLREYKV-WLIENYK--PKTVNL 61

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP--R 193
            L ++    +   ++ +    P + V   ++KT      ++ D + FKS      +    
Sbjct: 62  RLRAINCYLECIGKENWKQ--PFVRV---QQKTFLENVISEADYKYFKSCLKNDDEMFWY 116

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK----LLAMTP 249
               FL  +G R S+  +   +H++     +   K G +  + +P          LA   
Sbjct: 117 FVIRFLAATGARVSELIQIKAEHVKLGHLDLY-SKGGKLRRIYIPKELQSEALSWLAEKQ 175

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGATAHE 306
                 F+N    ++     S   K  ATK G+N +    H  R   A    +       
Sbjct: 176 QESGFIFLNKYGDRITTRGISGQLKKLATKYGINTAVVYPHSFRHRFAKSFLERCNDIAF 235

Query: 307 LMATYGWKTVDQAETYTKG 325
           L    G ++++    Y + 
Sbjct: 236 LADLMGHESIETTRIYLRK 254


>gi|183983585|ref|YP_001851876.1| phage integrase [Mycobacterium marinum M]
 gi|183176911|gb|ACC42021.1| phage integrase [Mycobacterium marinum M]
          Length = 420

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 59/388 (15%), Positives = 127/388 (32%), Gaps = 45/388 (11%)

Query: 3   PSLRLPPFVTKERTRHGKIIY----YFRKGHG-----RRIRLPYPHESTFIPAYMSALTG 53
           P LR+      +R   G  ++     +R   G     +R+     ++     A  + +  
Sbjct: 34  PQLRIGTHGQIKRIYTGGGVWLARCRYRDTDGVTRIVQRLGPADEYDQHGKLAADALIAA 93

Query: 54  STPKREYINSPRKKPTT-LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYR 112
              +R   N     P T +  L+ ++         +  +  ++      + +  G     
Sbjct: 94  LAQRRHSANHGEIGPDTKVTDLVEQHLSRLAEDGRSPVTMSTYRFTTKNLKKFIGGLRVS 153

Query: 113 KITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT-- 168
           + T   + + + S    H  + A Q  + +R   + AV    +  NP   V+  + ++  
Sbjct: 154 EATPARMDATLRSMRSAHGATMARQSKSILRGALQLAVMASVLGANPVRDVQPLRSQSQP 213

Query: 169 EGIRPWTKEDMQQFKSFW--SEGSQPRL---AFEFLLYSGLRCSDSCRAGVQHLQN---- 219
           +G    T + +++  +    S+  +          L+ +GLR S+               
Sbjct: 214 KGAVALTADQLRELLARLQTSDFCKEHDLIDPITLLIATGLRRSELLGLRWVDFDEKASM 273

Query: 220 -----------NIFSIKTQKTGT---IITVELPDGFMKLL---AMTPIGKE--TFFINND 260
                          ++  +T +     T+ LP   + +L      P   E    F +  
Sbjct: 274 LAITGKVIRVPGEGLLRVDETKSAAGRRTIPLPKFAVDVLGKRRQLPYLGEQVVIFPSTA 333

Query: 261 KQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
               +   F   ++    + GV   + H  RK  AT+  D G +A       G   V   
Sbjct: 334 GTLRDPNNFGKEWRTAREELGVAEVTTHSFRKTVATLIDDEGLSARIGADHLGHSHVSMT 393

Query: 320 ETYTKGADRIRLGIKNSRRISSVVDSDD 347
           +   +   R R+  + +  +   V  +D
Sbjct: 394 QD--RYMTRGRIHTQVAHLLDRAVRIND 419


>gi|297379871|gb|ADI34758.1| Tyrosine recombinase xerD [Helicobacter pylori v225d]
          Length = 356

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/284 (12%), Positives = 93/284 (32%), Gaps = 55/284 (19%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           L++E+  S + G L++ ++ ++      +       +  +    +I              
Sbjct: 102 LLAEFL-SVYTGGLSLATKKNYRIALLGLFSYIDKQNQDENEKSYIY------------- 147

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS-------FW 186
              L ++  + + A                     +       E++++F           
Sbjct: 148 NITLKNISGVNQSA-------------------GNKLPTHLNNEELEKFLEGIDKIEMSA 188

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDG---- 240
              ++ RL  + ++++G+R +++ +  ++    +N  ++I  +  G      +       
Sbjct: 189 KVRTRNRLLIKIIVFTGMRSNEALQLKIKDFTLENGCYTILIKGKGDKYRAVMLKAFHIE 248

Query: 241 --FMKLL---AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKF 292
               + L    + P+  +  F N     +         +     AG+ +    AH +R  
Sbjct: 249 SLLKEWLIERELYPVKNDLLFCNQKGSALTQAYLYKQVERIINFAGLRREKNGAHMLRHS 308

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
            AT+          +    G  +++ +  YT   D+ RL    S
Sbjct: 309 FATLLYQKRHDLILVQEALGHASLNTSRIYTH-FDKQRLEEAAS 351


>gi|193062556|ref|ZP_03043650.1| Rac prophage; integrase [Escherichia coli E22]
 gi|192931678|gb|EDV84278.1| Rac prophage; integrase [Escherichia coli E22]
          Length = 411

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 43/314 (13%), Positives = 87/314 (27%), Gaps = 65/314 (20%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHIRSGVE---- 124
           T   L   + K      L  N+    +S    +            I    I +       
Sbjct: 82  TFGELCDIWTKIKE-TELTTNTMKKTKSQLKTLRIIICESTPISHIRYSDILNYRNELLH 140

Query: 125 ------------SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
                        +  T  +   ++  +  L ++A +  +++  P   V++ +R      
Sbjct: 141 GETLYLDNPRSNKKGRTVRTVDNYIALLCSLLRFAYQSGFISTKPFEGVKKLQRNRIKPD 200

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
           P +K +         +G    L  +F +YSGLR  +      + +      +  ++  TI
Sbjct: 201 PLSKTEFNALMES-EKGQSQNLW-KFAVYSGLRHGELAALAWEDVDFEKGIVNVRRNLTI 258

Query: 233 ITVELPDG----------FMKLLAMTP-----IGKE-----TFFINNDKQK--------- 263
           + +  P                +          G       TF+     +          
Sbjct: 259 LDMFGPPKTNAGIRTVTLLRPAIEALKEQYKLTGHHRKSEITFYHREYGRTEKQKLHFVF 318

Query: 264 ------------MNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMA 309
                        + +     + A   +AG+ +    H  R   A     AGA    + +
Sbjct: 319 MPRVCNGKQKPYYSVSSLGARWNAAVKRAGIRRRNPYHT-RHTFACWLLTAGANPAFIAS 377

Query: 310 TYGWKTVDQA-ETY 322
             G +T     E Y
Sbjct: 378 QMGHETAQMVYEIY 391


>gi|146310433|ref|YP_001175507.1| phage integrase family protein [Enterobacter sp. 638]
 gi|145317309|gb|ABP59456.1| phage integrase family protein [Enterobacter sp. 638]
          Length = 387

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 40/198 (20%), Positives = 69/198 (34%), Gaps = 23/198 (11%)

Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRC 206
           A    ++A  P  +++ P  K + IR  TKE+            +P + F     +GLR 
Sbjct: 161 ANEWRWIAKAP--NIKCPVPKNKRIRWLTKEEAANLIRELPGHMKPVVIFALA--TGLRR 216

Query: 207 SDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI----- 257
           S+        +           +  K G  I V L D   K+L         +       
Sbjct: 217 SNITDLEWSQIDMQRKVAWIHPEDAKAGRAIGVALNDSACKVLRDQLGKHNRWVFVHTES 276

Query: 258 --------NNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELM 308
                       +KM +   + W +A   +AG+ N   H +R   A+    +G     L 
Sbjct: 277 SVRPDGTRTKAVRKMRSDANTAW-RAALRRAGIENFRFHDLRHTWASWLVQSGVPLSALQ 335

Query: 309 ATYGWKTVDQAETYTKGA 326
              GW++++  + Y   A
Sbjct: 336 EMGGWESIEMVQRYAHLA 353


>gi|114798167|ref|YP_761981.1| putative tyrosine recombinase XerC [Hyphomonas neptunium ATCC
           15444]
 gi|114738341|gb|ABI76466.1| putative tyrosine recombinase XerC [Hyphomonas neptunium ATCC
           15444]
          Length = 299

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/240 (14%), Positives = 68/240 (28%), Gaps = 18/240 (7%)

Query: 109 FDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQ--------EYVAINPCLS 160
            D R    +   +       + ++  + L+S++ L++W  R          Y+       
Sbjct: 50  ADVRARDIRAYLAERRREGLSDATVARILSSIKALYRWLDRAHGVGNAEVGYLQGPRRPQ 109

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220
                   +  +    E   +       G++       L   GLR S++       +   
Sbjct: 110 RLPRPVSIDAAKDLISEAENEPDQEPWIGARDAAVLSLLYGGGLRISEALSLTGADVPAP 169

Query: 221 IFSIKTQKTGTIITVELPDGFMKLLAMTP-------IGKETFFINNDKQKMNATQFSIWF 273
                  K G +  V L       + +            +  F       +N        
Sbjct: 170 ERLRIKGKGGKVRIVPLIPAVRDAIHVYADICPWALTRDKPLFRGAKGGALNPRLIQGLM 229

Query: 274 KAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           +      G+    + H +R   AT     GA    +    G  ++   + YT G D  RL
Sbjct: 230 QRMRAYLGLPDTATPHALRHAFATHLLANGADLRAIQTLLGHASLSTTQVYT-GIDSSRL 288


>gi|314952603|ref|ZP_07855596.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133A]
 gi|313595291|gb|EFR74136.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133A]
          Length = 330

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 50/267 (18%), Positives = 90/267 (33%), Gaps = 45/267 (16%)

Query: 100 DQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL 159
           + I+   G+    KI+  + +  V     T         +   +FK+ V  E    NP  
Sbjct: 48  NHILPAFGELRLDKISVSYCQKQVNEWHKTLKQYGFLRKTTAQIFKFGVAMEVCKDNPMS 107

Query: 160 SVERPKRKTEGIRPW---TKEDMQQFKSFWSEGSQPRLA--FEFLLYSGLRCSDSCRAGV 214
                 RK E  +P    TK+ +Q F     E +  +L   F  L Y+G+R S++     
Sbjct: 108 K-TLLPRKIEEEQPLKFYTKDQLQLFLQNTKENNSVKLYTFFRLLAYTGMRKSEALALQW 166

Query: 215 QHLQNNIFSIKTQKT-----------------GTIITVELPDGFMKLLAMTP-------- 249
           + +     +I   KT                  +  T++L D  +K L +          
Sbjct: 167 EDIDYFNKTITIGKTIAQDEFNQVVLQVPKTKNSSRTIQLDDFTLKQLRIWQQEQMKIMI 226

Query: 250 -------IGKETFFINNDKQKMNATQFSIW----FKAKATKAGVNKSAHGVRKFSATISA 298
                    K+  F  N  +       + W    +K    +  +  + HG R    ++  
Sbjct: 227 LYGYNTNSPKQFLFTTNTNKLYYPQVVNDWLDWIYKKTPMEPQI--TPHGFRHTHCSLLF 284

Query: 299 DAGATAHELMATYGWKTVDQAE-TYTK 324
           ++GA+  E+    G K +      Y  
Sbjct: 285 ESGASIKEVQERLGHKDIKTTMNIYAH 311


>gi|314939350|ref|ZP_07846593.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133a04]
 gi|314941881|ref|ZP_07848746.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133C]
 gi|314994173|ref|ZP_07859479.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133B]
 gi|314997838|ref|ZP_07862745.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133a01]
 gi|313588142|gb|EFR66987.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133a01]
 gi|313591408|gb|EFR70253.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133B]
 gi|313599328|gb|EFR78173.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133C]
 gi|313641359|gb|EFS05939.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133a04]
          Length = 329

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 50/267 (18%), Positives = 90/267 (33%), Gaps = 45/267 (16%)

Query: 100 DQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL 159
           + I+   G+    KI+  + +  V     T         +   +FK+ V  E    NP  
Sbjct: 47  NHILPAFGELRLDKISVSYCQKQVNEWHKTLKQYGFLRKTTAQIFKFGVAMEVCKDNPMS 106

Query: 160 SVERPKRKTEGIRPW---TKEDMQQFKSFWSEGSQPRLA--FEFLLYSGLRCSDSCRAGV 214
                 RK E  +P    TK+ +Q F     E +  +L   F  L Y+G+R S++     
Sbjct: 107 K-TLLPRKIEEEQPLKFYTKDQLQLFLQNTKENNSVKLYTFFRLLAYTGMRKSEALALQW 165

Query: 215 QHLQNNIFSIKTQKT-----------------GTIITVELPDGFMKLLAMTP-------- 249
           + +     +I   KT                  +  T++L D  +K L +          
Sbjct: 166 EDIDYFNKTITIGKTIAQDEFNQVVLQVPKTKNSSRTIQLDDFTLKQLRIWQQEQMKIMI 225

Query: 250 -------IGKETFFINNDKQKMNATQFSIW----FKAKATKAGVNKSAHGVRKFSATISA 298
                    K+  F  N  +       + W    +K    +  +  + HG R    ++  
Sbjct: 226 LYGYNTNSPKQFLFTTNTNKLYYPQVVNDWLDWIYKKTPMEPQI--TPHGFRHTHCSLLF 283

Query: 299 DAGATAHELMATYGWKTVDQAE-TYTK 324
           ++GA+  E+    G K +      Y  
Sbjct: 284 ESGASIKEVQERLGHKDIKTTMNIYAH 310


>gi|228471376|ref|ZP_04056177.1| integrase [Porphyromonas uenonis 60-3]
 gi|228306877|gb|EEK15990.1| integrase [Porphyromonas uenonis 60-3]
          Length = 404

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 42/249 (16%), Positives = 85/249 (34%), Gaps = 24/249 (9%)

Query: 96  ESYFDQIIRK---SGDFDYRKITTKHI----RSGVESRKHTPSSAIQFLTSMRVLFKWAV 148
             +    I +   + D  +  I    +    R  V   +H+     +   +++ + + A 
Sbjct: 136 RKHLRAFIEEKFHTSDIAFGLIEEDFLDCLQRYSVGKLEHSQGHYRKMALAVKKVCRLAY 195

Query: 149 RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-----FKSFWSEGSQPRLAFEFLLYSG 203
           R+  +       V   + + +  R   +  + +     F+ +  E    R  F F  Y+G
Sbjct: 196 REGLITRQLFAHVTIERGENKRPRALDRASLDKLQSLTFEPYEVELETARDLFLFACYTG 255

Query: 204 LRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFIN 258
           +   D      +HL  +         + QKT T+  V+L    ++L+      + T    
Sbjct: 256 VAYCDMVTLSREHLFTDDEGALWLKFRRQKTNTLCRVKLLSEAVRLMERHQSEERTTLFA 315

Query: 259 NDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS-ADAGATAHELMATYGWKT 315
                +  + +    KA   +AG+    SAH  R   AT+   + G     +    G   
Sbjct: 316 ----PIAYSVYLAQLKALQLRAGISIPLSAHVGRHTFATLITLERGVPIETVSRMLGHSN 371

Query: 316 VDQAETYTK 324
           +   E Y  
Sbjct: 372 IQTTERYAH 380


>gi|221195890|ref|ZP_03568942.1| phage family integrase [Atopobium rimae ATCC 49626]
 gi|221184237|gb|EEE16632.1| phage family integrase [Atopobium rimae ATCC 49626]
          Length = 310

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/276 (13%), Positives = 95/276 (34%), Gaps = 32/276 (11%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HT 129
           +  I+ Y++    G++   +   ++  +  + R   D     +T  + ++ +      H 
Sbjct: 16  QNWIAVYKE----GAVRSVTLKKYQLAYSWLERLVPDLKVGDLTRINYQALLNEYAIYHE 71

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLS--VERPKRKTEGIRPWTKEDMQQFKSFWS 187
             + + F   ++     AV +  +  +P     V+    + +  +   + ++ +  +   
Sbjct: 72  RQTTMDFHHQLKGAILDAVDEGLIERDPTRKAIVKGKSPRPKKGKYLNQYELHRLITTLE 131

Query: 188 EGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSIKTQKT---------------- 229
            G      +  LL   +G+R S++     +        +   KT                
Sbjct: 132 LGENINWDWLILLIAKTGIRFSEALAVTPRDFDFTRQVLSIDKTWDYKNGGGFVATKNRS 191

Query: 230 ---GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-S 285
                 I  +L   F  L+         F    +K+++  +  +   + +   AG+   S
Sbjct: 192 SNRKVQIDWQLIVQFSTLVRGLNEDDPLFVC--EKRRVYNSTINSVLERRCIDAGIPIIS 249

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
            HG+R   A++   AG +   +    G  +++  E 
Sbjct: 250 VHGLRHTHASLLLFAGVSIASVAKRLGHASMNTTEK 285


>gi|218262144|ref|ZP_03476706.1| hypothetical protein PRABACTJOHN_02379 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223578|gb|EEC96228.1| hypothetical protein PRABACTJOHN_02379 [Parabacteroides johnsonii
           DSM 18315]
          Length = 408

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 40/244 (16%), Positives = 87/244 (35%), Gaps = 26/244 (10%)

Query: 108 DFDYRKITTKHIRSGVESRKHTP----SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163
           D   ++I+   I+  +   K       ++ I+++  ++ +   A+  +++  +P +++  
Sbjct: 156 DIPMKEISHAIIQDYIHFLKTRKDLQENTVIRYMKVVKKITNMALANDWMEKDPFINIRF 215

Query: 164 PKRKTEGIRPWTKEDMQQFKSF---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--- 217
            +++       TKE+++  ++           R  F F  ++GL   D      +HL   
Sbjct: 216 HEQEVHK-EFLTKEELETMQNKVFDIPRLDLVRDIFLFQCFTGLAFIDVSELKAEHLVSD 274

Query: 218 --QNNIFSIKTQKTGTIITVELPDGFMKLL-----AMTPIGKETFFINNDKQKMNATQFS 270
              N       QKT  +  + L D  + +L           K T             + +
Sbjct: 275 NQGNLWIRKARQKTKVMCNIPLLDIPLAILEKYDGHPLAKKKGTLL-----PVPCNQKLN 329

Query: 271 IWFKAKATKAGVNK--SAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGAD 327
            + K  A    + K  + H  R   +T+ A A   +   +    G       + Y K  D
Sbjct: 330 NYLKEIADLCSIKKNLTTHTGRHTFSTVVALANNVSLENVAKMLGHTNTKMTQRYAKVLD 389

Query: 328 RIRL 331
           +  L
Sbjct: 390 QSIL 393


>gi|12831423|gb|AAK02079.1| site-specific recombinase IntIA [Aliivibrio fischeri]
          Length = 327

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 46/302 (15%), Positives = 87/302 (28%), Gaps = 59/302 (19%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----SRKHTPS 131
            + R      +LA N+   +  +    IR +      +I    I   +E     +  +P+
Sbjct: 16  DQLRIFIRTRALAYNTEKQYIYWISCFIRHNNYTSKDEINAFDIPDYLEHLVVKQNVSPN 75

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           +    L ++  L +  ++Q     N  L  +R K+ T+    ++    +           
Sbjct: 76  TQKTALNALIFLCREYLQQSV--DN--LEFKRSKKATKLPTVFS--HSEAISVINELNHP 129

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTGTIITVELP----DGFMKLL 245
            +L  + +  SGLR +++ R  V  +       +I+  K     T  LP          L
Sbjct: 130 TKLIAQLMYGSGLRINEALRLRVDDIDLIHKTITIRNGKGNKDRTTVLPDSIIPELKTQL 189

Query: 246 AMTP---------IGKETFFINN--------------------------------DKQKM 264
           A               E +  N                                  +  M
Sbjct: 190 AFVKQQHKMDAINGDDEVYLPNAIAKKYPHRAKSYGWQYVFPSKQISKDPRSGQRRRHHM 249

Query: 265 NATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
                         K  ++K  S+H  R   AT   + G     +    G   +   + Y
Sbjct: 250 LDRSVQKQVTNAIKKLEIDKKASSHTFRHSFATRILERGGDLRTIQELLGHSDIKTTQIY 309

Query: 323 TK 324
           T 
Sbjct: 310 TH 311


>gi|57167914|ref|ZP_00367054.1| DNA recombinase Cj0863c [Campylobacter coli RM2228]
 gi|57021036|gb|EAL57700.1| DNA recombinase Cj0863c [Campylobacter coli RM2228]
          Length = 354

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 26/195 (13%), Positives = 74/195 (37%), Gaps = 20/195 (10%)

Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGS------QPRLAFEFLLYSGLRCSDSCRAGVQHLQN 219
           +  +      ++++++F              + +L  + ++++G+R S++    ++ +  
Sbjct: 160 KGAKLPEFMNEDELKKFLEAIENSDFKNNTIRNKLIIKIIIFTGIRVSEAINIKLKDISE 219

Query: 220 N----IFSIKTQKTGTIITVELPDGFMKLLAMTPI-----GKETFFINNDKQKMNATQFS 270
                I  I+ +     + V +    ++ L               F+N + + +     S
Sbjct: 220 ENELYIIRIRAKGNKYRV-VMIKKELIEHLLKDVRVNYLSEDGLLFVNRNGKALTQAYVS 278

Query: 271 IWFKAKATKAGVNKS---AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GA 326
              +    +AG+ K    AH +R   AT+          +    G  +++ +  YT    
Sbjct: 279 RIVEQILFRAGIRKQKNGAHMLRHTFATLLYKKQKDLVLVQEALGHASLNTSRIYTHFDN 338

Query: 327 DRIRLGIKNSRRISS 341
           D+++L  + ++ +S 
Sbjct: 339 DKLKLAAQVAKELSE 353


>gi|300935450|ref|ZP_07150445.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 21-1]
 gi|300459332|gb|EFK22825.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 21-1]
          Length = 408

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 56/346 (16%), Positives = 114/346 (32%), Gaps = 31/346 (8%)

Query: 10  FVTKERTRHGKIIYYFR-KGHGRRIRLPYP--------HESTFIPAYMSALTGSTPKR-- 58
            ++   +  GKI + +R + +G+ +R+                +  Y   L         
Sbjct: 38  GLSARISPKGKITFQYRYRFNGKPVRMKIGEYGKMSLKDARYAVAEYRELLAKGKNPALC 97

Query: 59  -EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK 117
            +   +  +   ++  ++ +Y    +   L V  +    +    ++ K GD+    +TTK
Sbjct: 98  VKQAIAFEQGKRSITDVVEDYLSLPNVIKL-VAYKEVKSALMRHVVNKYGDYIADDVTTK 156

Query: 118 HIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE---GIR 172
                           +A   L  M+++   A+R+  +      ++           G R
Sbjct: 157 QWMDIFGEITAAGHAVTAGLILKRMKIIVNSAIRRGLMTNTAINNIRVADVGEHYAVGER 216

Query: 173 PWTKEDMQQFKSFWS---EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK---- 225
             + E++  F           Q ++A + LL +G R  +  +   +HL  +         
Sbjct: 217 YLSCEEIGHFWRTVDSSQIYPQNKIALKLLLLTGCRVGELQKMRREHLDLDNGVWTVPAA 276

Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKET-----FFINNDKQKMNATQFSI-WFKAKATK 279
             KT + I   L D  +K+L       E        IN   + +NA+   +     +   
Sbjct: 277 VAKTRSEIRRGLSDLSIKMLREVLTSHEYDYVFPPVINGGNRPVNASVIKVAAIFVRKRM 336

Query: 280 AGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
            G + S H +R+   T  +  G   H      G         Y K 
Sbjct: 337 GGKSWSCHDLRRTCRTHLSAIGVPVHIAEKVLGHSLRGILAVYDKY 382


>gi|265755606|ref|ZP_06090227.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|263234212|gb|EEZ19805.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 386

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 51/279 (18%), Positives = 99/279 (35%), Gaps = 38/279 (13%)

Query: 94  SFESYFDQIIRKSGDFDYRKIT------TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWA 147
            +      +  K G  D   ++        +    +  R    S+A + + +++ L   A
Sbjct: 115 EYRCLSCYLKDKLGTEDIPLMSLDMDFIKDYYNWMLSVRGLAKSTAFERVNTLKWLMYLA 174

Query: 148 VRQEYVAINPCLS-VERPKRKTEGIRPWTKEDMQQFKSF---WSEGSQPRLAFEFLLYSG 203
           + + ++  +P    V +P+ K       ++ED+Q+  S    +      R  F F+ +SG
Sbjct: 175 MDEGWIHKHPFKKFVCKPEYKKRPF--LSEEDLQRVISVKLSYKRQQAIRDMFVFMCFSG 232

Query: 204 LRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVELPDGFMKLLAM------TPIGK 252
           L  +D      +++  +            KT     V+L    ++L+        + +  
Sbjct: 233 LAHADLKELSYRNVHTDSDGNTWLVGNRVKTKAAYVVKLLPIAVELIEKYRGVNESKVSP 292

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAG--VNKSAHGVRKFSATISADAGATAHELMAT 310
           +  F   D             K    KAG  V  S H  R   AT++ + G     L   
Sbjct: 293 DRVFPVGD-----VGSMESSLKRIGEKAGCSVRVSPHVGRHTFATLALNKGMPLETLQKV 347

Query: 311 YGWKTVDQAETYT--------KGADRIRLGIKNSRRISS 341
            G KT+   + Y         +  DR+R  I    R+++
Sbjct: 348 LGHKTIISTQVYAELINPKIGEDTDRMREKIGGMFRLAN 386


>gi|88855245|ref|ZP_01129910.1| tyrosine recombinase [marine actinobacterium PHSC20C1]
 gi|88815773|gb|EAR25630.1| tyrosine recombinase [marine actinobacterium PHSC20C1]
          Length = 302

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 61/193 (31%), Gaps = 22/193 (11%)

Query: 154 AINPCLSVERPKRKTEGIRPWTKEDMQQFK--------SFWSEGSQPRLAFEFLLYSGLR 205
           + +    ++ PK +    R   ++ M            +      + +   E L  S LR
Sbjct: 93  STDAAARLKAPKAERHLPRVLNRDQMADMLQSVATRASTADPVALRDQAIVELLYASALR 152

Query: 206 CSDSCRAGVQHLQNNIFSIKTQKTGTIITV-------------ELPDGFMKLLAMTPIGK 252
            S+     +  + ++  +++    G    V              L  G  +L+  T    
Sbjct: 153 VSELAGLSLSDIDDSRLTVRVLGKGAKERVVPFGIPAHHAISDYLDRGRPQLIEETDGSA 212

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNKS-AHGVRKFSATISADAGATAHELMATY 311
             F     K+    T + +     A   G   S  H +R  +AT   D GA    +    
Sbjct: 213 PLFVGARGKRVSTRTVYEVIAHLLAEVPGSGGSGPHTLRHTAATHLLDGGADLRAVQEML 272

Query: 312 GWKTVDQAETYTK 324
           G  ++   + YT 
Sbjct: 273 GHASLGTTQLYTH 285


>gi|322433742|ref|YP_004215954.1| integrase family protein [Acidobacterium sp. MP5ACTX9]
 gi|321161469|gb|ADW67174.1| integrase family protein [Acidobacterium sp. MP5ACTX9]
          Length = 346

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 53/232 (22%), Positives = 93/232 (40%), Gaps = 27/232 (11%)

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAV-RQEYVAINPCLSVERPKRKTEGI-RPWTKEDMQQF 182
           +R++  +SA    +++ V F+W +  + Y   +P +     KRK     RP+++ED+ Q 
Sbjct: 78  ARENGFASAATDTSALSVFFQWLIVEERYFEDSPVIPAIHGKRKRARTGRPYSQEDISQI 137

Query: 183 KSFWSEGSQPRLA--FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ---KT-------- 229
           +         RL   FE    SGLR S+  R  ++ L     S+K     K+        
Sbjct: 138 RQLLDVRGNERLRAFFEIANESGLRKSEIYRLRLEDLVIEQRSLKVGLPNKSMTERLAFF 197

Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKA---------KATKA 280
           G   +  + +     +     G    F N+    +        FK           A + 
Sbjct: 198 GDRASCRILEWL--SVRKPDCGHGFLFHNHYGAPLLRNTTQEEFKRILCKMYRGRMAHET 255

Query: 281 GVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           G+   S H +R   A+  A  GA A+ LM   GW +    E+YT+ ++  ++
Sbjct: 256 GLETFSIHRLRHTLASKLASNGADANTLMNVLGWVSPSSLESYTRLSEEAKV 307


>gi|77405276|ref|ZP_00782372.1| integrase-like protein [Streptococcus agalactiae H36B]
 gi|77176071|gb|EAO78844.1| integrase-like protein [Streptococcus agalactiae H36B]
          Length = 380

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 42/302 (13%), Positives = 96/302 (31%), Gaps = 50/302 (16%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG-DFDYRKITTKHIRSGVESRKHT 129
              LI E+        +  +S ++ +    +I  + G +     I  +++++ +++   +
Sbjct: 65  FTNLIDEWWIFYQ-QEIKRSSIVTLKGNIREIRAEFGINIPVVNIDPRYVQNYLDNLDCS 123

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM---------Q 180
            +   +  + + ++F +AV  + +  NP    + PK K      W K +          +
Sbjct: 124 RNKKERNKSMLNLIFDYAVSLDIIKDNPARRAKLPKIKKTLND-WKKIEEKYLEEEEIKR 182

Query: 181 QFKSFWSEGSQPRLAF--EFLLYSGLRCSDSCRAGVQHLQ-------------NNIFSIK 225
             K  +   S  RL    EF+  +G R  ++      ++                   I 
Sbjct: 183 LLKELFRRPSTHRLGLLSEFMSLNGCRIGEAISIEPDNIDFKNKTLQLHGTYDRTNGYIN 242

Query: 226 TQKTG------------TIITVELP------DGFMKLLAMTPIGKETFFINNDKQKMNAT 267
            +KT             +   +E+       +   K            F   +   +   
Sbjct: 243 GEKTSPKTLASYRETIMSKREMEILQEMEFINELEKNTNKRYRDMGYIFTTRNGVPIQIN 302

Query: 268 QFSIWFKAKATKAG--VNK--SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETY 322
            F++  K    +    +NK  ++H  R    +  A+       +M   G        + Y
Sbjct: 303 SFNLALKKANERLEQPINKNITSHIFRHTLVSRLAENNVPLKAIMDRVGHADAKTTVQIY 362

Query: 323 TK 324
           T 
Sbjct: 363 TH 364


>gi|328947550|ref|YP_004364887.1| integron integrase [Treponema succinifaciens DSM 2489]
 gi|328447874|gb|AEB13590.1| integron integrase [Treponema succinifaciens DSM 2489]
          Length = 410

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 40/253 (15%), Positives = 82/253 (32%), Gaps = 54/253 (21%)

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
            +  + S+  Q L ++   +++ V+ E +      +V   K+KT     ++++++ +   
Sbjct: 151 KKNVSASTQNQALAALLFYYRF-VKNEPMEK--LTNVVHAKKKTRIPVVFSRQEVSKIIG 207

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH--LQNNIFSIKTQKTGTIITVELPDGF- 241
             + G++ +L  + L  +GLR +++    +       N   ++  K      V +P    
Sbjct: 208 NLT-GTK-KLIAKLLYGTGLRLNEALSLRILDLDFDRNEIIVRHGKGDKDRHVMIPRTLI 265

Query: 242 ---------------MKLLAMTPIGKETFFINNDKQKMNATQFSIW-------------- 272
                            L A     K    +++  Q  +      W              
Sbjct: 266 CELKSHIENLRKIHEEDLKAGFGSVKLPQALSDKYQGGSKEFKWQWLFPQKNRWKNPQTG 325

Query: 273 ---------------FKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKT 315
                           K    +AG+NK+A  H  R   AT   + G     +    G   
Sbjct: 326 EEGRWHLDESLMQRAVKQAILEAGINKNASCHTFRHSFATHLLENGYDIRTIQELLGHSD 385

Query: 316 VDQAETYTKGADR 328
           V     YT   +R
Sbjct: 386 VSTTMIYTHVLNR 398


>gi|319762347|ref|YP_004126284.1| integrase family protein [Alicycliphilus denitrificans BC]
 gi|317116908|gb|ADU99396.1| integrase family protein [Alicycliphilus denitrificans BC]
          Length = 337

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 54/321 (16%), Positives = 98/321 (30%), Gaps = 30/321 (9%)

Query: 20  KIIYYF---RKGHGRRIR----LPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL- 71
              + F   R   G+R R    LP  +       +       T +   I +   KP  L 
Sbjct: 9   NKRWRFEFDRYIAGQRQRTSRLLPKGYTRAEADKFDLE---ETKRLHAIATGVSKPEPLI 65

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR---SGVESRKH 128
           +  +  Y K     + A+ S  +                +  +    +       + +  
Sbjct: 66  EDAVLLYLKH---HAPALKSFENIRRELQACFEAYAGKPFSALPAVALNYKPKDADGKAL 122

Query: 129 TPSSAIQFLTSMRVLFKWA-VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           + ++A   L  +R   ++A         NP  S+  PK + E      + +         
Sbjct: 123 SAATARNRLAYIRAACRYAWKHHGMGDANPASSLPMPKVRNERHVYLGRAEFLAICRCIK 182

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQ-HLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
            G   R       YSG+R ++   A V       I + +  K      V +      +L 
Sbjct: 183 PG-PSRACIRIAFYSGMRAAEPGMAAVSSDGSAFILAPEDTKNHLPRVVPVHPRIAHILR 241

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAH 305
              +            +      S  FKA A  AG+     H +R  +A+   +AG   +
Sbjct: 242 NPAL---------WPPRRTKWTVSKEFKAGARLAGMGHARLHDLRHSTASEMINAGVDLY 292

Query: 306 ELMATYGWKTVDQAETYTKGA 326
            +    G K+      Y+  A
Sbjct: 293 TVGGVLGHKSAVSTRRYSHLA 313


>gi|77165703|ref|YP_344228.1| Phage integrase [Nitrosococcus oceani ATCC 19707]
 gi|254434304|ref|ZP_05047812.1| site-specific recombinase, phage integrase family protein
           [Nitrosococcus oceani AFC27]
 gi|76884017|gb|ABA58698.1| Phage integrase [Nitrosococcus oceani ATCC 19707]
 gi|207090637|gb|EDZ67908.1| site-specific recombinase, phage integrase family protein
           [Nitrosococcus oceani AFC27]
          Length = 406

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 58/339 (17%), Positives = 113/339 (33%), Gaps = 41/339 (12%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSA------LTGSTPKREYINSPRKKPTTLKWLISEYRKS 81
           G  +RI L      T + A   A      +             + +  TL   +  Y  S
Sbjct: 56  GREKRITLGKYGHLTLMQARKEAARLLGEIAVGRNPLAEKAQAKLRAVTLGEALEHYLTS 115

Query: 82  AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK-HTPSSAIQFLTSM 140
                L   +         +            IT   + +  +     + S A   +  +
Sbjct: 116 ---RPLKARTIQGTRHTMGKCFSDWMKRPLTSITRDKVAARHKQLGTASKSHANLAMRYL 172

Query: 141 RVLFKWAV-------RQEYVAINPCLS---------VERPKR--KTEGIRPWTKEDMQQF 182
           R +F +A+        +  +A NP            VER +   K+  ++PW +  +Q+ 
Sbjct: 173 RAVFNFAMADYTDNEGRPVIADNPVNRLSEARTWFRVERRRTVIKSHELKPWMQA-VQRL 231

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDG 240
           ++        R  F  +L +GLR +++     Q++    N  +++  K     T+ L D 
Sbjct: 232 ENGA-----ARDYFMLVLLTGLRRTEALNLRWQNVDLVANTLTVQDTKNHQAHTLPLSDY 286

Query: 241 FMKLLAMTPIG--KETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISA 298
             ++LA        E  F  +  +  N        ++    AG++ S H +R+  AT++ 
Sbjct: 287 LTEMLAARLEDTYSEYVFSTSRGRLSNLRGPLAEVRSY---AGISFSIHDLRRTFATVAD 343

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
                 + + A    K  +         D  RL     +
Sbjct: 344 SLDVPGYAVKALLNHKAANDVTAGYIVVDTERLRAPMQK 382


>gi|319654362|ref|ZP_08008449.1| hypothetical protein HMPREF1013_05069 [Bacillus sp. 2_A_57_CT2]
 gi|317393861|gb|EFV74612.1| hypothetical protein HMPREF1013_05069 [Bacillus sp. 2_A_57_CT2]
          Length = 388

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/291 (14%), Positives = 87/291 (29%), Gaps = 57/291 (19%)

Query: 85  GSLAVNSRISFESYFD---------------QIIRKSGDFDYRKITTKHIRSGVESRKHT 129
            +   N++  +                    +I         + +T +++R   E  K  
Sbjct: 78  KNRTENTKQEYFRDLLLFYQQLLEQAELLEVEIRDMQEYRLLKNLTARNMRKYQEWLKDA 137

Query: 130 P----------SSAIQFLTSMRVLFKWAVRQEYVAINP------CLSVERPKRKTEGIRP 173
           P          ++  +    +R   K+    +Y+ + P        +V    R  + +  
Sbjct: 138 PLGKGGKQYSVATLSRKTVVIRGFLKFLYENKYIKV-PLHQKMLSSNVRSFDRPNKEM-- 194

Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTG- 230
            +  ++    +++            L  +GLR  + C A V  L   +  + +     G 
Sbjct: 195 -SSVEVISLVNYFRTHPILYGLISVLATTGLRIQELCNAKVSDLAYLDGEYWLTVMGKGQ 253

Query: 231 TIITVELPDGFMKLL-----------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATK 279
               V +    +K +            + P      F  +  +       S +   K  K
Sbjct: 254 KERQVLIHPNVLKAIEGFRKRRRLDFKLDPSDSSPLFTTSKGKAYGYKYLSNYLITKINK 313

Query: 280 AGVN--------KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           A ++         + H  R   A ISAD GA    +  + G   +   + Y
Sbjct: 314 ADLDFIKMRKNPITPHSFRHGFALISADQGADLLTIKESLGHSDIKTTQIY 364


>gi|313891992|ref|ZP_07825593.1| site-specific recombinase, phage integrase family [Dialister
           microaerophilus UPII 345-E]
 gi|313119635|gb|EFR42826.1| site-specific recombinase, phage integrase family [Dialister
           microaerophilus UPII 345-E]
          Length = 335

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 45/285 (15%), Positives = 92/285 (32%), Gaps = 46/285 (16%)

Query: 88  AVNSRISFESYFDQIIR-----KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRV 142
           + N+  ++ES +D         K   F     T  +  + +     + S+  + ++++  
Sbjct: 38  SENTINAYESDWDDFCNWCIYNKFSAFPATSETVVNYINDLADYAKS-STIKRRVSAISE 96

Query: 143 LFKWAVRQEYVAINPCL---------SVERPK-RKTEGIRPWTKEDMQQFKSF----WSE 188
            +  A+       NPC           + R K  + +G  P   ED+++           
Sbjct: 97  NYNAAIASGINVNNPCKNWIIKEALIGLNRKKGTRQKGKTPLYWEDLKKIIVTMNLSCLT 156

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIK-----TQKTGTIITVELPD 239
             + +           R S+     +  +    Q  I ++K      +K G  I +   +
Sbjct: 157 DIRDKAILLLGFMGAFRRSELTSLELNDITFVPQGIIITVKESKTDQEKAGQTIGIPYLE 216

Query: 240 --------GFMKLLAMTPIGKETFF--INNDKQ----KMNATQFSIWFKAKATKAGVNK- 284
                        +    I K   F  +  + +     ++    ++  K    K G+ K 
Sbjct: 217 DKNMCAVSALKLWIKEANITKGPLFRRLLKNGKTSDNALSDKSINLIVKKYVNKIGLQKE 276

Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
              AH +R   AT +A  G     +M      +V+    Y   AD
Sbjct: 277 LYGAHSLRHGFATFAAMNGIEERIIMKQTRHHSVEMVRHYINEAD 321


>gi|290475819|ref|YP_003468711.1| e14 prophage integrase [Xenorhabdus bovienii SS-2004]
 gi|289175144|emb|CBJ81947.1| e14 prophage; integrase [Xenorhabdus bovienii SS-2004]
          Length = 308

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 50/296 (16%), Positives = 94/296 (31%), Gaps = 35/296 (11%)

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHWG----SLAVNSRISFESYFDQIIRKSGDFDYRK 113
            + +   + K  T+   + +Y K          +  N+        D + +         
Sbjct: 4   SDRVAKIKGKEITVNTWLDKYWKIQEERLETNDIKFNTFKQKRKPVDLMRQALAMKPLPA 63

Query: 114 ITTKHIRSGVESRK--HTPSSAIQFLTSMRVLFKWAVRQEYVAI--NPCLSVERPKRKTE 169
           +  + I   ++  K    P  A    + +  +FK A     V    NP L+ ++P+RK  
Sbjct: 64  VDARDIAGILDEYKTAGQPRMAQVVRSVLIDVFKEAQHAGEVPPGYNPALATKQPRRKIT 123

Query: 170 GIRPWTKEDMQQ-FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
             R    E+ +Q F+   S+      A    + +G R  D        + ++   I  +K
Sbjct: 124 RQR-LNLEEWKQIFEIANSQHRYMGNAMLLAIVTGQRLGDISEMKFSDIWDDHLHISQEK 182

Query: 229 TGTIITVEL--------PDGFMKLLAMTPIGKETFFI--------NNDKQKMNATQFSIW 272
           TG  + + L              +          + I        +   +K+ A   +  
Sbjct: 183 TGARLAIPLALRCNALNTSLREVVAQCRDRVLSPYLIHYFHTTSQSKRGEKVTANTLTTN 242

Query: 273 FKAKATK------AGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           FK    K       G   + H  R  S  +  + G    +L    G K   Q + Y
Sbjct: 243 FKKARDKIDIDWGEGTPATFHEQRSLSERLYREQGINTKDL---LGHKNQQQTDKY 295


>gi|270340181|ref|ZP_06007346.2| integrase [Prevotella bergensis DSM 17361]
 gi|270332344|gb|EFA43130.1| integrase [Prevotella bergensis DSM 17361]
          Length = 384

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/249 (15%), Positives = 83/249 (33%), Gaps = 24/249 (9%)

Query: 96  ESYFDQIIRK---SGDFDYRKITTKHIRSGVE----SRKHTPSSAIQFLTSMRVLFKWAV 148
             +    I +   + D  + +I  + +            H+     +   +++ + + A 
Sbjct: 116 RKHLRAFIEEKFHTTDIAFSQIEEEFLDCLQHYSVGELGHSQGHYRKMALAVKKVCRLAY 175

Query: 149 RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-----FKSFWSEGSQPRLAFEFLLYSG 203
           R+  +       V   + + +  R   +  + +     F+ +  E    R  F F  Y+G
Sbjct: 176 REGLITRQLFAHVTIERGENKRPRALDRASLDKLQSLTFEPYEVELETARDLFLFACYTG 235

Query: 204 LRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFIN 258
           +   D      +HL  +         + QKT T+  V+L    ++L+        +    
Sbjct: 236 VAYCDMVALSREHLFTDDEGALWLKFRRQKTNTLCRVKLLSEAVRLMERYQSEDRSTLFT 295

Query: 259 NDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS-ADAGATAHELMATYGWKT 315
                +  + +    KA   +AG+    SAH  R   AT+   + G     +    G   
Sbjct: 296 ----PIAYSVYLAQLKALQLRAGISIPLSAHVGRHTFATLITLERGVPIETVSRMLGHSN 351

Query: 316 VDQAETYTK 324
           +   E Y  
Sbjct: 352 IQTTERYAH 360


>gi|167566496|ref|ZP_02359412.1| Bbp50 [Burkholderia oklahomensis EO147]
          Length = 362

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 47/290 (16%), Positives = 97/290 (33%), Gaps = 31/290 (10%)

Query: 90  NSRISFESYFDQIIRK--------SGDFDYRKITTKHIRSGVESRKH-TPSSAIQFLTSM 140
           +++  +ES                 G    R++   H+ + +  R   +  +   +++ M
Sbjct: 66  STKDGYESAIRFWKAAACDKNQNPLGPTPLRRLKLSHVLTAIAGRPDLSGKTVNNYVSVM 125

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF--KSFWSEGSQPRLAFEF 198
           R     AV    +  NP  +V R K +     P+++++ ++   ++  +   Q     EF
Sbjct: 126 RKALDLAVSDNVLTDNPAANVPRAKHQKPPPDPFSRDESEKIIHEAERAYPGQVHNLIEF 185

Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSI------------KTQKTGTIITVELPDGFMKLLA 246
             ++GLR S+       ++     +I               KT    TV L    +  L 
Sbjct: 186 WFWTGLRTSEIFGLQWLNVDLQNGTILVAEALVRGEHKDRTKTAVARTVRLNSRALAALT 245

Query: 247 M----TPIGKETFFINNDKQKMNATQFSIWFKAKA---TKAGVN-KSAHGVRKFSATISA 298
                T +     F +         + +           + G+  +  + +R   AT   
Sbjct: 246 RQRSFTQMAGAAIFHDPRYSTRWEDERAFRRSFWTPILKRLGIRYRRPYNMRHSYATAML 305

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
            AG T        G        TY K  D  +  ++ +R  S+++    P
Sbjct: 306 MAGMTPAFCAKQLGHSIEMFLTTYAKWMDGEQNALEMARLESTLLSPSCP 355


>gi|256840829|ref|ZP_05546337.1| integrase [Parabacteroides sp. D13]
 gi|256738101|gb|EEU51427.1| integrase [Parabacteroides sp. D13]
          Length = 184

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/166 (20%), Positives = 64/166 (38%), Gaps = 19/166 (11%)

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL----AMT 248
           RL F    +SG+   D      +++++ I     QK+G++I +E+P G ++LL    A T
Sbjct: 14  RLMFA---FSGIAFVDLAHLKWENIRDGILQYHRQKSGSLIQLEIPSGALRLLDELSACT 70

Query: 249 PIGKETFFINNDKQK----------MNATQFSIWFKAKATKAG--VNKSAHGVRKFSATI 296
                  F      +             ++F+   K  A   G  +  +++ +R   A+ 
Sbjct: 71  AKESFYLFPFLSGTRTGEAAYKEYNRTLSRFNHDLKLLARSTGVTLPVTSYTIRHSFASF 130

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
             +   +   +    G K++   + Y K     RL   N     SV
Sbjct: 131 LKEQDVSIEVISELLGHKSIKTTQIYLKSFSLERLSKVNRNCFESV 176


>gi|217967670|ref|YP_002353176.1| integrase domain protein SAM domain protein [Dictyoglomus turgidum
           DSM 6724]
 gi|217336769|gb|ACK42562.1| integrase domain protein SAM domain protein [Dictyoglomus turgidum
           DSM 6724]
          Length = 227

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/216 (12%), Positives = 64/216 (29%), Gaps = 12/216 (5%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           + K L+  +   +        +   ++       +     +    + +   S +  R   
Sbjct: 7   SWKSLLDNFFFVSQVNGKRPKTLQWYKETLIPFTKSVPLEELSVYSIQKYISSLRERGLK 66

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
           P+S    + +++    +   + Y+  N    ++R K           E +        + 
Sbjct: 67  PASIDTHIRAIKSFLHFLYDEGYLEENISAKIKRYKLPKSYPHILNDEQILNLLKVCDKK 126

Query: 190 S----QPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTGTIITVELPDGFMK 243
           S    +  +     L +G+R S+     V  +        I++ K      V +    ++
Sbjct: 127 SWDSFRNYVIVLTFLDTGIRLSELLNLTVNDVNLPKRSIFIRSGKGEKDREVYMGKTLVR 186

Query: 244 LLAMTPIGKETF------FINNDKQKMNATQFSIWF 273
            +A     +  F      FI      +N       F
Sbjct: 187 EMAKWLKMRGYFPYEERVFITKQGYPLNKRGVERIF 222


>gi|157146165|ref|YP_001453484.1| hypothetical protein CKO_01921 [Citrobacter koseri ATCC BAA-895]
 gi|157083370|gb|ABV13048.1| hypothetical protein CKO_01921 [Citrobacter koseri ATCC BAA-895]
          Length = 428

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 44/328 (13%), Positives = 96/328 (29%), Gaps = 63/328 (19%)

Query: 57  KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD----FDYR 112
           K     S  K+ +T K L S++        ++  + +S  S  + + R  G+     D +
Sbjct: 68  KALKKFSSTKRISTFKEL-SDFFTDTKSLEVSEATLLSITSVVNTLKRVVGENTRLVDIQ 126

Query: 113 KITTKHIRSGVE-------------SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL 159
                + R  +                   PS+  + +  +  + K A R +++   P  
Sbjct: 127 HADILNYRKELLTGEVFNPSMPNRIKNGRAPSTVNKQMAVLSEMLKLANRSQFILHAPYE 186

Query: 160 SVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN 219
            V R K       P    + Q   +         L     +++G+R  + C    + +  
Sbjct: 187 GVSRLKLSKNDPDPLLLHEYQALIAALPR--SQALIIIIAVHTGMRPGEICALAWEDIDL 244

Query: 220 --NIFSIKTQKTGTIITV---------------ELPDGFMKLLAMT-------------- 248
                 +    T   + V                  D  ++   +T              
Sbjct: 245 VKGEIHVSRNLTNKRVFVPPKTDAGIRTITLLKPAHDALLEQYEITGNSPKQEIKFHHRE 304

Query: 249 ----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATIS 297
                      +   T + +      +    S  ++     +G+  ++ +  R   A  +
Sbjct: 305 IGKTEQQYLRFVFSPTSYSSTKGGYFSKDSISYGWRRGTKLSGIRERNPYQSRHTYACWT 364

Query: 298 ADAGATAHELMATYGWKTVDQA-ETYTK 324
             AGA    + +  G +      E Y+K
Sbjct: 365 LMAGANPSFIASQMGHEDARMVYEVYSK 392


>gi|32267344|ref|NP_861376.1| integrase/recombinase XerD [Helicobacter hepaticus ATCC 51449]
 gi|32263397|gb|AAP78442.1| integrase/recombinase XerD [Helicobacter hepaticus ATCC 51449]
          Length = 362

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/205 (15%), Positives = 73/205 (35%), Gaps = 32/205 (15%)

Query: 165 KRKTEGIRPWTKEDMQQFKSFWSE-------GSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217
           K   +      +++++QF     E        ++ +L  + ++Y+G+R S++     + +
Sbjct: 159 KSGQKLPSFLNQKELEQFLRAIDESQLGEKVAARNKLIIKLIVYTGIRVSEALNLRCKDI 218

Query: 218 ----QNNIFSIKTQKTGTIITVE--------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265
                  + SI+ +     + +         L     + L  +P+  +  F N   + + 
Sbjct: 219 LPAKDCYLISIRGKGNKPRVVMIRQSHIQNLLNTWLTQRLGFSPM-HDLLFCNAKGKALT 277

Query: 266 ATQFSIWFKAKATKAGVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
            +      +   T+AG+ K    AH +R   AT+          +    G   ++ +  Y
Sbjct: 278 QSYIYKNVENILTQAGIRKEKNGAHMLRHSFATLLYQQKHDLVMVQEALGHSDLNTSRIY 337

Query: 323 TKGADRIRLGIKNSRRISSVVDSDD 347
           T           +  R+  VV   D
Sbjct: 338 THF---------DMERLQEVVSVMD 353


>gi|315923340|ref|ZP_07919580.1| transposase [Bacteroides sp. D2]
 gi|313697215|gb|EFS34050.1| transposase [Bacteroides sp. D2]
          Length = 406

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 46/274 (16%), Positives = 83/274 (30%), Gaps = 39/274 (14%)

Query: 93  ISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVESRKHTPSSAIQFLTSMRVLFKWA 147
            +++S    + R  G  D R         +     + S   + ++   +L ++R L+  A
Sbjct: 135 AAYKSTRSSLARFIGRPDVRMSEVDLAFVRRYEDFLYSNGASGNTVSYYLRNLRSLYNQA 194

Query: 148 VRQEY----------VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP----R 193
           V   Y              P  +V+R           ++ DMQ       E        R
Sbjct: 195 VTDGYHPRGEYPFAKAQTRPAKTVKR---------ALSRTDMQNLADLKLENEPELEFTR 245

Query: 194 LAFEFLLYS-GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252
             + F  Y+ G+   D        + N + +    K+  +I + +      ++       
Sbjct: 246 NLYLFSFYAQGMAFVDIVLLKKTDICNGVLTYSRHKSKQLIRIVVTPQMQGVIDKYNTEN 305

Query: 253 ETFFIN-----NDKQKMNATQFSIWFKAKATKA-----GVNKSAHGVRKFSATISADAGA 302
           E  F           K          +     A      V  + +  R   AT++ D GA
Sbjct: 306 EYLFPIISGEYASGYKQYRLALGRINRHLKKIAVVADIKVPLTTYTARHTWATLARDYGA 365

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
               + A  G  + +    Y K  D   L   NS
Sbjct: 366 PISVISAGLGHTSEEMTRVYLKDFDVSMLNQVNS 399


>gi|325859511|ref|ZP_08172653.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
 gi|325482979|gb|EGC85970.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
          Length = 336

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/294 (12%), Positives = 84/294 (28%), Gaps = 44/294 (14%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
              +I +Y       SL   +     + FD++  +                G      TP
Sbjct: 13  FSIMIVKYIDYMRSMSLESRTAEIRLAQFDKLAYERVTEGVGITKELADEWGKIRSNETP 72

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP--WTKEDM-QQFKSFWS 187
           ++  Q ++ +R    +       +  P    + PK       P  +T +++   F+    
Sbjct: 73  NNRYQRISLLRRFSSFLQLHGIDSYLP----KLPKYDKNAFMPYIFTTKEITDIFRESDK 128

Query: 188 EGSQPR----------LAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITV 235
                +               L  +G+R  ++      ++   + I ++   K      V
Sbjct: 129 LHVHRKYLNSSKFVMPTLIRLLYSTGIRIGEALSLKHSNVNLCDGILTLYKCKNSEDRLV 188

Query: 236 ELPDGFMKL---------LAMTPIGKETFFINND-KQKMNATQFSIWFKAKATKAGVNK- 284
            L     ++                 ++FF  +    +      +  FK    +AG++  
Sbjct: 189 PLSLSMREICKDYVSYKERMNIKTEDDSFFFTSPCGNQCLRGSIADSFKIILQRAGIHHN 248

Query: 285 ------SAHGVRKFSAT----ISADAGATAH----ELMATYGWKTVDQAETYTK 324
                   H +R            + G   +     LM   G K++     Y +
Sbjct: 249 HNRVGVRLHDLRHTFCVHTLHRLCEQGLDLYYSMPILMTYIGHKSLSATNRYVR 302


>gi|257866765|ref|ZP_05646418.1| phage integrase [Enterococcus casseliflavus EC30]
 gi|257872718|ref|ZP_05652371.1| phage integrase [Enterococcus casseliflavus EC10]
 gi|257800723|gb|EEV29751.1| phage integrase [Enterococcus casseliflavus EC30]
 gi|257806882|gb|EEV35704.1| phage integrase [Enterococcus casseliflavus EC10]
          Length = 380

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 55/326 (16%), Positives = 108/326 (33%), Gaps = 53/326 (16%)

Query: 45  PAYMSALTGSTPKREYINSPRKKPTTLKWL----ISEYRKSAHWGSLAVNSRISFESYF- 99
               +AL       +     +   TT + L    I  YR       +  +S    + +  
Sbjct: 43  AEAQTALNRLLVDFKEKQEFKINVTTFQELYELWIDNYR-----TRVKPSSVAVAQRFCK 97

Query: 100 DQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL 159
           + I+   G+    KI+  + +  V     T         +   +FK+ V  E    NP  
Sbjct: 98  NHILPAFGELRLDKISVSYCQKQVNEWHKTLKQYGFLRKTTAQIFKFGVAMEVCKDNPMS 157

Query: 160 S--VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA--FEFLLYSGLRCSDSCRAGVQ 215
              + R     + ++ +TK+ +Q F     E +  +L   F  L Y+G+R S++     +
Sbjct: 158 KTLLPRKIEDEQPLKFYTKDQLQLFLQNTKENNSVKLYTFFRLLAYTGMRKSEALALQWE 217

Query: 216 HLQNNIFSIKTQKT-----------------GTIITVELPDGFMKLLAMTP--------- 249
            +     ++   KT                  +  T++L D  +K L +           
Sbjct: 218 DIDYFNKTVTIGKTIAQDEFNHVVLQVPKTKNSSRTIQLDDFTLKQLRIWQQEQMKIMIL 277

Query: 250 ------IGKETFFINNDKQKMNATQFSIW----FKAKATKAGVNKSAHGVRKFSATISAD 299
                   K+  F  N  +       + W    +K    +  +  + HG R    ++  +
Sbjct: 278 YGYNTNSPKQFLFTTNTNKLYYPQVVNDWLDWIYKKTPMEPQI--TPHGFRHTHCSLLFE 335

Query: 300 AGATAHELMATYGWKTVDQA-ETYTK 324
           +GA+  E+    G K +      Y  
Sbjct: 336 SGASIKEVQERLGHKDIKTTMNIYAH 361


>gi|167841449|ref|ZP_02468133.1| probable site-specific [Burkholderia thailandensis MSMB43]
          Length = 328

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 45/320 (14%), Positives = 102/320 (31%), Gaps = 26/320 (8%)

Query: 25  FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHW 84
            RK      R       T    +   +     +  ++++     TT+  L+  Y +    
Sbjct: 4   VRKKGFPA-RSKKFDTKTEALEWGRIVEAEMDRGLFVSTDEADRTTVADLLDRYTRDVSP 62

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTSMRV 142
              +  S        +++ ++ G +    +T+ H+    ++R  + +P + I  L  +  
Sbjct: 63  TKRSGGSDKGRA---EKLKKQLGAYKLTALTSSHLVGYRDARLKEVSPQTVIHELNLLNR 119

Query: 143 LFKWAVRQEYVAINPCL--SVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200
               A  +E+  + P     V +P++     R    +++Q            R      +
Sbjct: 120 ALTLA-TREWGIVLPSGIPKVIKPRKPQGRDRRLHPDEIQAIIDATESPDL-RDFIRLAV 177

Query: 201 YSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFIN 258
            +G+R  +      +++  +     +   KT T  TV L      +L      + T    
Sbjct: 178 ATGMRRGELASLRWENIDLDRRTAHLPLTKTDTPRTVPLSSVATAVLQARKDARYTVPFA 237

Query: 259 NDKQKMNATQFSIWFKAK------ATKAG--------VNKSAHGVRKFSATISADAGATA 304
                +         +A+                   V    H +R  + +   + G   
Sbjct: 238 LTANALTRAFCRAVQRARGLYESTCRVLERPVDPQWLVGIRLHDLRHEATSRFFELGLQT 297

Query: 305 HELMATYGWKTVDQAETYTK 324
            E+ +  G KT+   + YT 
Sbjct: 298 VEVASITGHKTLAMLKRYTH 317


>gi|153811898|ref|ZP_01964566.1| hypothetical protein RUMOBE_02291 [Ruminococcus obeum ATCC 29174]
 gi|149832032|gb|EDM87117.1| hypothetical protein RUMOBE_02291 [Ruminococcus obeum ATCC 29174]
          Length = 388

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 49/328 (14%), Positives = 90/328 (27%), Gaps = 70/328 (21%)

Query: 85  GSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKH----IRSGVESRKHTPSSAIQFLTS 139
             L   +  ++   +D  +    G     +I            +  RK   ++     T 
Sbjct: 61  TELRRTTYTNYMYMYDHYVRDSFGKKKIGEIKYSDVLYFYYHLINERKLQVNTLETIHTV 120

Query: 140 MRVLFKWAVRQEYVAINPCLSV-----ERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQ 191
           +   F+ AVR + +  NP   V     ++P R        T E  + F ++       + 
Sbjct: 121 LHPTFQLAVRDDIIRNNPSHGVMSEIKKKPGRNHGVRHALTVEQQRAFMNYTSNSPVFNH 180

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNN----------------------IFSIKTQKT 229
               F  LL +G R  +      + +                          F++   KT
Sbjct: 181 WAPLFTVLLGTGCRIGEIIGIRWEDIDLEKRLININHSVTYYPRRAETTKCEFAVSLPKT 240

Query: 230 GTII-TVELPDG-----FMKLLAMTPIGKET---------FFINNDKQKMNATQFSIWFK 274
              I TV + +        +       G  T          F N      N    +   K
Sbjct: 241 EAGIRTVPMMEPVYNAFMEEYEYQKENGFSTVTLDGMEGFIFTNRFGNLHNPQAVNRTIK 300

Query: 275 AKAT--------KAGVNK---------SAHGVRKFSATISADAGATAHELMATYGWKTVD 317
                       KA   K         S H +R    T   +       + A  G   ++
Sbjct: 301 RIRENYNAEEILKAKKEKREPIIIPHFSCHHLRHTFCTRFCENETNIKVIQAVMGHANIE 360

Query: 318 QA-ETYTKGADRIRLGIKNSRRISSVVD 344
              + Y +  D  +   +   ++S  +D
Sbjct: 361 TTMDIYAEVTDMKK--TEAIEKLSHNLD 386


>gi|113971550|ref|YP_735343.1| phage integrase family protein [Shewanella sp. MR-4]
 gi|113886234|gb|ABI40286.1| phage integrase family protein [Shewanella sp. MR-4]
          Length = 310

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/274 (14%), Positives = 85/274 (31%), Gaps = 31/274 (11%)

Query: 85  GSLAVNSRISFESYFDQIIR--KSGDFDY-RKITTKHIRSGVESRKH------TPSSAIQ 135
             LA NS+ S  S    I +     D    +++++ + +  ++ R        +  S  +
Sbjct: 12  SRLAPNSQRSIASQMRSIAQLMDWPDATIGKQLSSINYQQAMQIRALLIHEQWSARSINR 71

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR---PWTKEDMQQFKSFWSE---- 188
            +T+++ + K A       +     +        G     P + E + +  +  S+    
Sbjct: 72  AMTAIKSIVKVAALMGEADMQQVAHINSIANMKHGAHQGNPLSAEQVTKLLALLSKRQDT 131

Query: 189 -GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFM--- 242
            G +    F   L +GLR S+     +       +   +   K      + LP+      
Sbjct: 132 YGLRTLAIFALFLGTGLRRSELAALMLADYDSATSTIKVVAGKGNKSRILFLPNWVEQHV 191

Query: 243 -KLLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGV-NKSAHGVRKFS 293
              L +  +       +          + ++        K K    GV   S H +R+  
Sbjct: 192 IAWLNVRKMQLGPLICHCRTTGIIVHYRPVSQDALYRLVKDKLGDIGVMGASPHDLRRTF 251

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
            T   +     + +    G   +     Y K  D
Sbjct: 252 ITRLLEQNVDINTVRQMAGHADISTTTIYDKRGD 285


>gi|120556113|ref|YP_960464.1| integron integrase [Marinobacter aquaeolei VT8]
 gi|120325962|gb|ABM20277.1| integron integrase [Marinobacter aquaeolei VT8]
          Length = 322

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/317 (11%), Positives = 86/317 (27%), Gaps = 60/317 (18%)

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES----RKHTPSSAI 134
           R        +  +  S+  +    I  +     + +    I   +      R  +P +  
Sbjct: 11  RTEIRTKQYSYRTEKSYLYWVRLFILFNDKKHPKVMGNHEIERFLNHLAVNRGVSPGTQN 70

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
           Q L ++  ++K  +++E    N  L  +  K         + +++           +  L
Sbjct: 71  QALCAIIFVYKHVLKREI--EN--LQYKMTKTPRRMPTVLSPDEVASILQNMDA--EYWL 124

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252
               L   GLR +++    V+ +        +   K        +P    + +       
Sbjct: 125 ITALLYGCGLRINEALSLRVKDIDLKSRSLLVFNGKGRKDRYTLIPGNLRENMERQFAHV 184

Query: 253 ETFFINND---------------------------------------------KQKMNAT 267
                ++                                              +  ++ +
Sbjct: 185 RAVHESDLADGFGLTSVPASLHKKYGPAMKDFGWQHLFPSVTRCVHPIAGYVCRHHLHHS 244

Query: 268 QFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
            +S   +      G+ K  +AH  R   AT    +G+    +    G   +   E YT  
Sbjct: 245 SYSRRLRQAVLATGITKRVTAHTFRHAFATELLRSGSDIRTVQEILGHSDIRTTEIYTHV 304

Query: 326 A-DRIRLGIKNSRRISS 341
             DR    +    R+ S
Sbjct: 305 IGDRRAGTVSPFDRLPS 321


>gi|306840808|ref|ZP_07473555.1| phage-related integrase [Brucella sp. BO2]
 gi|306289203|gb|EFM60452.1| phage-related integrase [Brucella sp. BO2]
          Length = 376

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 44/305 (14%), Positives = 101/305 (33%), Gaps = 26/305 (8%)

Query: 49  SALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSG 107
           +A      ++    +  K   T      ++ +      +A ++R    S F++ +  K G
Sbjct: 51  AAGKSPAKEKAREKARVKDAETFGAWAEKWLRGYQ---MADSTRDMRRSVFERELKPKFG 107

Query: 108 DFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165
           +    +IT + +R+  ++   +  P++A+     +  +++WA+ +     NP   V    
Sbjct: 108 NRKLIEITHEDLRALTDAIVERGAPATAVHSREIVLQVYRWAIERGQKVENPAELVRPTT 167

Query: 166 RKT--EGIRPWTKEDMQQFKSFWS-EGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQNN 220
                   R  T +++     +    G+ P  R A + LL + +R S+   A    +  +
Sbjct: 168 IAKFEPRDRALTPDEIGLMYQYMERIGTTPSIRAAAKLLLLTMVRKSELTNATWGEINFS 227

Query: 221 IFSIK----TQKTGTIITVELPDGFMKLLAMTPI---GKETFFINNDKQ--KMNATQFSI 271
                      K      V L    + +         G +    +       M++   + 
Sbjct: 228 EALWTIPKERMKRRNPHLVFLSRQALDIFIALKTFAGGSDYVLPSRYDSDLPMSSATLNQ 287

Query: 272 WFKAKATKAGVNKS------AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
                   A            H +R+ ++T+  +AG     +      +       Y K 
Sbjct: 288 VLTLTYRLAQKEGKSLAKFGPHDLRRTASTLLHEAGYNTDWIEKCLAHEQRGVRAVYNKA 347

Query: 326 ADRIR 330
             R +
Sbjct: 348 EYREQ 352


>gi|302867639|ref|YP_003836276.1| integrase family protein [Micromonospora aurantiaca ATCC 27029]
 gi|302570498|gb|ADL46700.1| integrase family protein [Micromonospora aurantiaca ATCC 27029]
          Length = 329

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/299 (14%), Positives = 87/299 (29%), Gaps = 41/299 (13%)

Query: 55  TPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFES------------YFDQI 102
            P+      P   P     +   + ++     L+ ++R ++                D +
Sbjct: 3   RPEVLPRARPAALPAGPADVTEAWLRN---RRLSEHTRDAYRRDVTGWLTWCAEQAVDPL 59

Query: 103 IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162
                D +      +    G   R  TP++  + L+++   + + V+   V  NP  + +
Sbjct: 60  RATFLDVNTYGRELESTPRGRAGRPLTPATVARRLSALSSWYDFLVKLGAVPANPVSAAD 119

Query: 163 RPKRKTE--GIRPWTKEDMQQFKSFWSEGSQPRLAFE-----FLLYSGLRCSDSCRAGVQ 215
           RP+   +       T +++    +     + P  A        L   GLR  +     V 
Sbjct: 120 RPRVDRDHSATVGLTPDEVDALIAAAEADTGPAAARNRAAVALLADLGLRVGELVALDVS 179

Query: 216 HLQNNIFSIK---TQKTGTIITVELPDGFMKLLAM------------TPIGKETFFINND 260
            L             K G +    L  G    +               P       +   
Sbjct: 180 DLGTERGHRSIRFVGKGGKVRRRALTPGTAYAVDAYLAVRAAAQGVTVPELTGPLLVTAT 239

Query: 261 KQKMNATQFSIWFKAKATKAGV----NKSAHGVRKFSATISADAGATAHELMATYGWKT 315
             +++        +  A +AG+      S H +R   AT +   G    ++    G   
Sbjct: 240 GGRLDRHAVFRLVRRLAQRAGIAAWAKLSPHSLRHAFATTARSEGVPLEDVQDAMGHAD 298


>gi|221067020|ref|ZP_03543125.1| integrase family protein [Comamonas testosteroni KF-1]
 gi|220712043|gb|EED67411.1| integrase family protein [Comamonas testosteroni KF-1]
          Length = 322

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/267 (14%), Positives = 82/267 (30%), Gaps = 32/267 (11%)

Query: 86  SLAVNSRISFE---SYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLT--SM 140
            LA ++    +     F+  + +     +   + K + + + S +   S +   L    +
Sbjct: 32  GLAESTLQVLQIQLRAFNAWLLEVTGRSWEHASVKDLNAFLLSWRDARSVSTLRLKQWML 91

Query: 141 RVLFKWAVRQEYVAINPCL-------SVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
           + L+ WA     V ++           + RPK           + M+   +  ++G + R
Sbjct: 92  QRLYAWAKDAGIVDLSVERAMLSLRGGLRRPKLPPSSNAI--AQLMELPDTTTAKGMRDR 149

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251
              E L  SGLR ++     +  L  +     I   K      V + D     +A     
Sbjct: 150 AVLELLYGSGLRAAELLNLTLDQLPSKGKPMQI-WGKGSKERLVVVGDHARHWIAQYKSA 208

Query: 252 KETFFINN-DKQKMNATQF--------------SIWFKAKATKAGVNKSAHGVRKFSATI 296
           +     +     +  A  F                       + G+  + H +R   A+ 
Sbjct: 209 RPLILADGGHGHRSTAKLFVSSGRYPDYRYYQLRRMVSRYGRECGLRLTPHALRHAFASH 268

Query: 297 SADAGATAHELMATYGWKTVDQAETYT 323
                A+ H +    G +  +    Y 
Sbjct: 269 LYQGKASLHTIQLLLGHECQETTAHYV 295


>gi|322385251|ref|ZP_08058898.1| phage integrase family site-specific recombinase [Streptococcus
           cristatus ATCC 51100]
 gi|321270875|gb|EFX53788.1| phage integrase family site-specific recombinase [Streptococcus
           cristatus ATCC 51100]
          Length = 400

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 52/327 (15%), Positives = 100/327 (30%), Gaps = 45/327 (13%)

Query: 8   PPFVTKERTRHGKIIY-----------YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTP 56
             +    R + G+I Y             ++    + +   P +S    AY   L     
Sbjct: 11  KKYRGVSRDKQGRIYYQTEFKANDLTGKRQRKKSYKDQFGNPFKSE-KQAY-DELCRVRA 68

Query: 57  KREYINSPRKKPTTLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT 115
           + +   +      T    + E Y         +V  + +   +    I   G      IT
Sbjct: 69  EFQMSQNRNGDYMTFADYMEEIYLPYYRQTVQSVTYKTALTHH-KMFIEVFGQKRLSAIT 127

Query: 116 TKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
            +           T  P+ A       +    +A R + +   PC  ++ PK      + 
Sbjct: 128 VRDCEQFRVHLIDTYSPNYAKGVWIRFKQCLGYAERLQIIEEFPCKMLDNPKGSRPDTKF 187

Query: 174 WTKEDMQQFKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----------- 218
           WT +D ++  + +     E      A     ++GLR S+        +            
Sbjct: 188 WTLDDFRKVIATFDLTDYEELHRFTAIWLYFFTGLRVSEGLSLIWSDIDFDRKLLHVQST 247

Query: 219 ----NNIFSIKTQKTGTII---TVELPDGFMKLLAMTP-----IGKETFFINNDKQKMNA 266
                     +  +T T      +EL D  +++L          G  T+ +    + ++ 
Sbjct: 248 LEYEGKGVYTRKNQTKTEAGFRWIELDDETVEVLQRWRKVQVENGDNTYILARFGKPLSK 307

Query: 267 TQFSIWFKAKATKAGVNK-SAHGVRKF 292
              S   K +A KAGV   +  G+R  
Sbjct: 308 CTLSRILKRQAKKAGVEVITGKGLRHS 334


>gi|116621640|ref|YP_823796.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116224802|gb|ABJ83511.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 336

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/300 (13%), Positives = 91/300 (30%), Gaps = 42/300 (14%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFE---SYFDQIIRKSGDFDYRKITTKHIRSGV------ 123
           WL+ +        + +  + +++      F + + +  +     ++ +H+          
Sbjct: 20  WLVEQ-------RNASHRTILAYRDAWRLFLRFVAQRRNKPVAALSLEHLTGADVLAFLQ 72

Query: 124 ---ESRKHTPSSAIQFLTSMRVLFKWAVRQE---YVAINPCLSVERPKRKTEGIRPWTKE 177
              + R+ + ++    L ++R  F + V  E    +     L V   K      R     
Sbjct: 73  YIEKERRASVNTRNCRLAALRSFFSFVVEHEPRVALQCAEVLRVPFKKATRRATRYLESV 132

Query: 178 DMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTG-- 230
           ++    S        G +       L  +G R  ++     Q +       ++    G  
Sbjct: 133 EVSAILSQPDRTTVGGQRDHALLSLLYNTGARIQEALDLRPQDVYFKSPAHVRLMGKGRK 192

Query: 231 ---TIITVELPDGFMKLLAMTPIG-KETFFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284
              + I  E  +    L+   P    E  F+N  +  + A+ F    +     A      
Sbjct: 193 ERISPIWPETANLVTALIRRQPRKPDEPIFVNRYRSPLTASGFRFRLRQYVEAAAKTVPT 252

Query: 285 ------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIRLGIKNSR 337
                 + H  R  +A     AG     + +  G   +D    Y +   +  R  ++   
Sbjct: 253 ISRKRVTPHVFRHSTAVHLVAAGVDVTVIRSWLGHAQLDTTNHYAQANLETKRKALEQVD 312


>gi|315223138|ref|ZP_07865006.1| site-specific tyrosine recombinase XerD-like protein [Streptococcus
           anginosus F0211]
 gi|315187827|gb|EFU21574.1| site-specific tyrosine recombinase XerD-like protein [Streptococcus
           anginosus F0211]
          Length = 243

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 50/242 (20%), Positives = 95/242 (39%), Gaps = 15/242 (6%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSSAIQFLTSMRVL 143
            +L+ NS+ ++    +Q I    D  + KIT  ++R    S     PS   + L+++   
Sbjct: 12  KNLSENSKTAYFYDLEQFI----DVTHAKITETNLRIYQASIADFKPSVQKRKLSAINQF 67

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203
             +  +Q  ++      +E PK            D+  F +  ++    RL    +L  G
Sbjct: 68  LHYLYKQRLISD--FYRLELPKVGIPKEHDAEILDLSDFYADTNQY-NGRLIALLILEMG 124

Query: 204 LRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK 263
           L  S+  +  V  +  +   I+ +K G    V +PD  +  L  T  G  T+ +  + + 
Sbjct: 125 LLPSEILQLKVADVNLDFQIIRIEKAGQKRIVPIPDQLIGELETTLEG--TYLLEKNGKS 182

Query: 264 MNAT-QFSIW--FKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
            +    F     F  +  +A +  SA  +R+       + G   +E+    G KT+   E
Sbjct: 183 YSRQWGFRQLEAFLIEKNQATL--SAQSLREQYILRQREQGVELYEIARNLGLKTMMTLE 240

Query: 321 TY 322
            Y
Sbjct: 241 KY 242


>gi|166366145|ref|YP_001658418.1| phage integrase family protein [Microcystis aeruginosa NIES-843]
 gi|166088518|dbj|BAG03226.1| phage integrase family [Microcystis aeruginosa NIES-843]
          Length = 186

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 22/170 (12%), Positives = 65/170 (38%), Gaps = 15/170 (8%)

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT----Q 227
           +  ++ ++ +  + +    + R  F    ++  R S++ +  V  +     + +      
Sbjct: 10  KILSQAELDRLFAGFD-NDRDRCLFGICFHTSCRISEALQLTVNDV-GTAITFRKSTTKG 67

Query: 228 KTGTIITVELPDGFMKLLAM---TPIGKETFFIN----NDKQKMNATQFSIWFKAKATKA 280
           K GT  ++ +     K+L +           F +     +K  ++ +   +  +    +A
Sbjct: 68  KKGTR-SIPVNPALRKILDLYLQEFQPDSYLFPSFHNAREKGHLHRSSADLILRNACERA 126

Query: 281 GVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           G+   S H  R+ + T+ ++ G     +    G  +++  + Y + +D  
Sbjct: 127 GLKGVSTHSFRRSALTMMSNRGVPLRVIQKISGHSSLEVLQRYLEVSDEQ 176


>gi|254422709|ref|ZP_05036427.1| integron integrase subfamily [Synechococcus sp. PCC 7335]
 gi|196190198|gb|EDX85162.1| integron integrase subfamily [Synechococcus sp. PCC 7335]
          Length = 302

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 44/294 (14%), Positives = 87/294 (29%), Gaps = 62/294 (21%)

Query: 90  NSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF----LTSMRVLFK 145
           ++  S+  Y    I        +K+    IR+ +         A       L+++  L++
Sbjct: 2   STEKSYVYYIRDYILFHNKQHPKKMGASEIRAYLSHLATVRHVAASTQTVALSALLFLYR 61

Query: 146 --WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203
               +   Y+      ++ER KR       +T+ ++ +  +     +   L    L  +G
Sbjct: 62  QVLGIELPYID-----NIERAKRPQRLPVVFTRSEVMRILANLDGINH--LVVSLLYGTG 114

Query: 204 LRCSDSCRAGVQHLQNNI--FSIKTQKTGTII---------------------------- 233
           +R  +  R  V+ +       +++  K                                 
Sbjct: 115 MRLMEGLRLRVKDIDFEYRHITVRDGKGKKDRHTLLPESVIQPLQHQLKKAKHLHEQDLA 174

Query: 234 ----TVELPDGFMKLLAMT----------PIGKETFFINN---DKQKMNATQFSIWFKAK 276
               TVELP    +               P GK +    +    +  +         K  
Sbjct: 175 VGYGTVELPYALARKYPSAHKEWKWQFVFPSGKRSLDPRSKVVRRHHLYEQSVQRAVKKA 234

Query: 277 ATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
             KA + K+   H +R   AT   + G     +    G K V     YT   ++
Sbjct: 235 IQKAEITKNGGCHTLRHSFATHLLEDGYDIRTVQELLGHKDVKTTMIYTHVLNK 288


>gi|291514614|emb|CBK63824.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
          Length = 423

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 49/281 (17%), Positives = 81/281 (28%), Gaps = 26/281 (9%)

Query: 90  NSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFL----TSMRVL 143
             +         I +  K  D    ++            KH    A   +     S++ +
Sbjct: 135 RYQTLRRDLSLFICQDYKVKDIPLVELDQSFAEKFAAYLKHVRGLADTTISVEIKSLKHI 194

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF---KSFWSEGSQPRLAFEFLL 200
            K A     +  NP         + E I   T+E++ +    K       + R  F F  
Sbjct: 195 VKKAFNDGQMEKNPFAYYYYFADQPE-IEYLTEEEINKLIIGKVKQQRQDRTRDMFLFCC 253

Query: 201 YSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF 255
           ++GL  +D  +   + L+         S   QKT    TV+L      +L    I    F
Sbjct: 254 FTGLSYADLAKLSYEELKQTPNGAWWISSIRQKTKVPFTVKLLPVAKAILEKYRIPANRF 313

Query: 256 ---FINNDKQKMNATQFSIW---FKAKATKAGVNK--SAHGVRKFSATIS-ADAGATAHE 306
              F  N  +              K  A +  + K    H  R   AT      G     
Sbjct: 314 NRLFPENPGKVFPVASLKSSDVCLKHIARQCEITKNLKFHMARHTFATTVSLMNGIPLET 373

Query: 307 LMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
           +    G K     + Y K  ++  +      RI   +    
Sbjct: 374 VSKMLGHKYTTTTQIYAKVTNQ--MIDNAISRIEDQIGERF 412


>gi|260426429|ref|ZP_05780408.1| putative integrase [Citreicella sp. SE45]
 gi|260420921|gb|EEX14172.1| putative integrase [Citreicella sp. SE45]
          Length = 247

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/206 (16%), Positives = 66/206 (32%), Gaps = 36/206 (17%)

Query: 164 PKRKTEGIR----PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN 219
           PKR   G R    PW    ++   S               LY+G R +D        ++ 
Sbjct: 5   PKRARSGWRARYEPWHDGQLELLISKGKR--HIVKVALVALYTGQRRADVIGLCENQIRE 62

Query: 220 NIFSIKTQKTGTIITVELPDGFMKLL---------AMTPIGKETFFINNDKQKMNATQFS 270
            ++SI+  KTG  +T+ L    + ++         A   +       N+         F 
Sbjct: 63  GVWSIEQGKTGNSVTLPLHPVVLAIIEEERAARRKAQVVVPALPLLTNSRGNPWGP-GFG 121

Query: 271 IWFKAKATKAGV-------------NKSAHGVRKFSATISADAGA-------TAHELMAT 310
             +  +  + G+               + HG+R   AT+ A+  A           + A 
Sbjct: 122 ASWTKELVRIGLRPERMDEIEEDAFRPTFHGLRTTKATVIANTVARNPDLFGGIQRVQAM 181

Query: 311 YGWKTVDQAETYTKGADRIRLGIKNS 336
            G  +   +  Y + A+   +  +  
Sbjct: 182 LGHLSERMSRHYARRAEVEHMNRETV 207


>gi|253570220|ref|ZP_04847629.1| integrase [Bacteroides sp. 1_1_6]
 gi|251840601|gb|EES68683.1| integrase [Bacteroides sp. 1_1_6]
          Length = 408

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/256 (15%), Positives = 96/256 (37%), Gaps = 24/256 (9%)

Query: 90  NSRISFESYFDQIIRKSG--DFDYRKITTK---HIRSGVESRKHTPSSAIQFLTSMRVLF 144
            + +++E      ++  G  +  +  +T +      + +  R    +S   ++  MR ++
Sbjct: 132 GTALNYEKTMKNFVKFLGGVNLPFSAMTEQVIADYNAFLVQRGMVRNSISFYMRIMRAVY 191

Query: 145 KWAVRQEYVA-INPCLSVERPKRKTEGIRPWTKEDMQQFKSF-WSEGSQPRLAFEFLLYS 202
             AVRQ+ V   +P   V     +T   R  ++  + Q      +EG+   LA +  ++S
Sbjct: 192 NKAVRQKLVEQSHPFTEVYTGIDRTRK-RAVSESVISQLYKLNLAEGTPLALARDIFIFS 250

Query: 203 ----GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF--- 255
               G+   D      +++QN +     +KTG +++V +     +++         +   
Sbjct: 251 YCTRGMAFVDIAYLKRENIQNGVICYARRKTGQLLSVRIEPSIQRIIDRYSSALSPYVFP 310

Query: 256 FINNDKQKMNATQFSIWFKAKATK---------AGVNKSAHGVRKFSATISADAGATAHE 306
            + + + K    ++ +       +         AG   +++  R   AT + +       
Sbjct: 311 ILTSTETKPAYEEYQVAINNHNRQLRRLSKMLPAGCKLTSYTSRHSWATAARNHNVPISV 370

Query: 307 LMATYGWKTVDQAETY 322
           + A  G  +    + Y
Sbjct: 371 ISAGMGHTSEQTTQIY 386


>gi|24217183|ref|NP_714666.1| site-specific integrase/recombinase XerD-like protein [Leptospira
           interrogans serovar Lai str. 56601]
 gi|45655681|ref|YP_003490.1| phage-related integrase/recombinase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|24202229|gb|AAN51681.1| XerD-related integrase [Leptospira interrogans serovar Lai str.
           56601]
 gi|45602652|gb|AAS72127.1| phage-related integrase/recombinase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 299

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 47/303 (15%), Positives = 105/303 (34%), Gaps = 26/303 (8%)

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESY-FDQIIRKSGDFDYRKITTKH 118
            +  P+K   +++ LI   R+     +    +  ++  Y  D +     D    KIT K 
Sbjct: 3   ELEVPKKNKHSIERLIKIIRQ----RNYKKATAYTYMKYNLDFL--HFADKPAEKITVKD 56

Query: 119 IRSGVESRKHTPSSAIQF---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
           +   ++  K    S+      ++S+++ F     ++ + +N     +RP R+       T
Sbjct: 57  LNRYMDHLKKRKVSSSTIQINVSSLKMFF-----EDVMKMNLFQDFQRPVREYNNPNAIT 111

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTII 233
            ++MQ      S  ++  L    + + GLR  +       ++        IK+       
Sbjct: 112 YKEMQNILKTASSNAKHELMCGLVYFGGLRVGELISLRWAYIDTKRKSIQIKSPILSQSR 171

Query: 234 TVELPDGFMKLLAMTPI-----GKETFFI--NNDKQKMNATQFSIWFKAKATKAGV--NK 284
           TVE+P     L+             T+     +      +             +G+    
Sbjct: 172 TVEIPVELGALVKKYEREIVNSSSNTYLFPGKSLGSHTTSRNVERIISEIGKNSGISSPV 231

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
           +   +R   A      G++ +++    G KT+   E+Y      +R  ++   R  ++ +
Sbjct: 232 TVFTLRHSRALHLIADGSSLNQVKDFLGHKTLASTESYLPVKKNLRAAVREKSRQDALKN 291

Query: 345 SDD 347
              
Sbjct: 292 IRK 294


>gi|327538852|gb|EGF25495.1| tyrosine type site-specific recombinase [Rhodopirellula baltica
           WH47]
          Length = 301

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/238 (14%), Positives = 82/238 (34%), Gaps = 16/238 (6%)

Query: 88  AVNSRISFES-YFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKW 146
           A ++  ++ S +   +    G     +I  + IR  +E   +  +SA +   ++  L   
Sbjct: 68  AASTIKNYRSAWVCFLRWYRG--PLDQIDQEDIREYLELLVNGGASASEVSVTLSALRTG 125

Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRC 206
             +   +     + +  P++  +     +K+++Q+     +   + +L    L  +GLR 
Sbjct: 126 LDKFCLLRC--TVGLVSPRKSKQLPVVMSKKEVQRMME-AARTLRDKLLLTVLYATGLRV 182

Query: 207 SDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLA---MTPIGKETFFINNDK 261
           ++  R              ++  K      V L D  + L+        G    F +  +
Sbjct: 183 AEVARLQWSDFDFDRQQIRVQLGKGKKDRYVMLADDLLPLMRQLWRRTKGVGYLFPSEGR 242

Query: 262 Q---KMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWK 314
           +    ++        K     +G+ K  + H  R   AT   ++G     +    G  
Sbjct: 243 RVDRHLSPRTIQRAVKQARILSGIGKAVTPHSFRHSFATHLIESGTDIRFIQKLLGHT 300


>gi|296163716|ref|ZP_06846430.1| integrase family protein [Burkholderia sp. Ch1-1]
 gi|295886037|gb|EFG65941.1| integrase family protein [Burkholderia sp. Ch1-1]
          Length = 418

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 48/276 (17%), Positives = 91/276 (32%), Gaps = 30/276 (10%)

Query: 85  GSLAVNSRISFE-SYFDQIIRKSG--DFDYRKITTKHIRSGVESR--KHTPSSAIQFLTS 139
             LA ++R +      D ++ + G    D R+I    +   +  R   HTP+SA    +S
Sbjct: 136 RGLAASTRRNHRDCVRDFLVDQFGGHRIDMRRIKPADVLHFIVERSKGHTPASAGTIASS 195

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRK----TEGIRPWTKEDMQQFKSFWS----EGSQ 191
           +RV  ++  RQ        L    PK          +  T+  + QF S +      G +
Sbjct: 196 VRVYLRF--RQFSGDHTEALIAAVPKVAVWSMARLPKLLTQAQLAQFLSAFDTQTASGRR 253

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELP----DGFMKLL 245
                  L+  GLR  +     +  +        I+  K      + LP          +
Sbjct: 254 DYAMARLLVELGLRVGEVAALQLADVDWHEGTLRIRATKCKRTDLLPLPVQTGRALFDYV 313

Query: 246 A--MTPIGKETFFINNDK---QKMNATQFSIWFKAKATKAGVNKSA---HGVRKFSATIS 297
                       F+ +     + +         +    + G   S+   H +R  +A+  
Sbjct: 314 RFGRPQTSSRALFVRHRAPFDRPVTPAVVCSAIRLAYARCGWPSSSMGTHLLRHTAASRM 373

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
              GA+  ++      ++++    Y K  D  RL  
Sbjct: 374 LGNGASLKDIADVLRHRSINTTMIYAK-VDFRRLAA 408


>gi|262046646|ref|ZP_06019607.1| prophage integrase [Lactobacillus crispatus MV-3A-US]
 gi|293380039|ref|ZP_06626138.1| site-specific recombinase, phage integrase family [Lactobacillus
           crispatus 214-1]
 gi|312977817|ref|ZP_07789563.1| putative toxin-antitoxin system, toxin component, PIN family
           [Lactobacillus crispatus CTV-05]
 gi|260573095|gb|EEX29654.1| prophage integrase [Lactobacillus crispatus MV-3A-US]
 gi|290923446|gb|EFE00350.1| site-specific recombinase, phage integrase family [Lactobacillus
           crispatus 214-1]
 gi|310895124|gb|EFQ44192.1| putative toxin-antitoxin system, toxin component, PIN family
           [Lactobacillus crispatus CTV-05]
          Length = 382

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 57/361 (15%), Positives = 119/361 (32%), Gaps = 52/361 (14%)

Query: 11  VTKERTRHGKIIYYFR--KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP---- 64
           + K + + GK+ Y F+   G                 +Y  A    T  +E   S     
Sbjct: 9   IYKYKLKSGKVKYGFKTYIGTDPETGKAVKPSRQGFDSYKEAEAAKTKLKEEGPSKFTHK 68

Query: 65  ---RKKPTTLK-----WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT 116
              ++   T++     WL   YR      +L   +R S  ++ + I ++ G      I  
Sbjct: 69  KEQKENRKTVQEVYEIWL-EVYRADVRGSTL--RTRKS--NWKNNIEKEFGGVYIDGIDI 123

Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR-KTEGIRP-- 173
            H++S       T  +    L  +  + K+A+ +++   +P   +  PK+ K +   P  
Sbjct: 124 NHLQSFATKLAETHINYRSILNLLHRVIKYAILRDWCDRDPFDKIVMPKKTKAKSKHPAN 183

Query: 174 --WTKEDMQQFKSFWSEGSQPRLAFEFLLY-SGLRCSDSCRAGVQHLQ--NNIFSIK--- 225
             ++  +++ F     +  +    +   +   G R  ++     +++   N    I+   
Sbjct: 184 NFYSLSELKTFLECAKKYKEKYYVYFMTVGNLGCRPGEALALKWKNIDFKNKEIFIQHSI 243

Query: 226 -----------TQKTGTIIT-VELPDGFMKLLA------MTPIGKETFFINNDKQKMNAT 267
                        KT   +  V L D    +L       +   G +  F  ++      +
Sbjct: 244 STDENGNKIYGPTKTPASVRKVPLSDQLAIVLKEYKEETIYKKGNDFIFHKDNGDFYERS 303

Query: 268 QFSIWFKAKATKAGVNK-SAHGVRKFSATIS--ADAGATAHELMATYGWKTVDQA-ETYT 323
               W         + + + HG R   AT+       A   ++    G K      +TY+
Sbjct: 304 APDHWITTLYNNYPLRRITPHGFRHTLATLLNNRKNNANIKDIQYLLGHKKASTTMDTYS 363

Query: 324 K 324
            
Sbjct: 364 H 364


>gi|237811823|ref|YP_002896274.1| site-specific recombinase, phage integrase family [Burkholderia
           pseudomallei MSHR346]
 gi|284159933|ref|YP_001058564.2| phage integrase family site specific recombinase [Burkholderia
           pseudomallei 668]
 gi|237502971|gb|ACQ95289.1| site-specific recombinase, phage integrase family [Burkholderia
           pseudomallei MSHR346]
 gi|283775097|gb|ABN83658.2| site-specific recombinase, phage integrase family [Burkholderia
           pseudomallei 668]
          Length = 339

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/279 (14%), Positives = 94/279 (33%), Gaps = 25/279 (8%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
            + TTL  L+  Y +       +  S +       ++ ++ G +    +T  H+    ++
Sbjct: 55  AERTTLADLLDRYTRDISPTKRSGGSDMGRAG---KLKKQLGAYKLTALTASHLVDYRDA 111

Query: 126 R--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL--SVERPKRKTEGIRPWTKEDMQQ 181
           R  + +P + +  L  +  +   A  +E+  + P     V +P++     R    +++Q 
Sbjct: 112 RLKEVSPQTVVHELNLLNRVLTLA-TREWGIVLPAGVPKVIKPRKPQGRDRRLHPDEIQA 170

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPD 239
                +E    R      + +G+R  +      + +        +   KT +  TV L  
Sbjct: 171 IID-ATESLDLRDFIRLAVATGMRRGELASLRWESIDLARRTAHLPVTKTDSPRTVPLST 229

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK------ATKAG--------VNKS 285
             + +L    + +     N     +         +A+                   +   
Sbjct: 230 DAVTILHARRVAQCVAPFNVTSDALTRAFCRAVQRARKLYVSTCAVLDRPIDSNWLIGIR 289

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            H +R  + +   + G    E+ +  G KT+   + YT 
Sbjct: 290 LHDLRHEATSRLFEKGLNPMEVASITGHKTLSMLQRYTH 328


>gi|212710968|ref|ZP_03319096.1| hypothetical protein PROVALCAL_02037 [Providencia alcalifaciens DSM
           30120]
 gi|212686665|gb|EEB46193.1| hypothetical protein PROVALCAL_02037 [Providencia alcalifaciens DSM
           30120]
          Length = 375

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 54/342 (15%), Positives = 104/342 (30%), Gaps = 43/342 (12%)

Query: 20  KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKR--------EYINSPRKKPTTL 71
           K+ + +R     +      +E+      + A      +R        + +   + K  T+
Sbjct: 25  KVYWRYRHPITGKYHALGDNEAEAREIAIEANNRLAEQRSRQVMAISDRVARIKGKEITV 84

Query: 72  KWLISEYRKSAHWG----SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127
              +  Y            +  N+        D +           +  + I S ++  K
Sbjct: 85  NTWLDRYWVIQEERLADGDIKQNTYKQKRKPVDLMRHSLAMKPLSAVDARDIASILDEYK 144

Query: 128 HTP--SSAIQFLTSMRVLFKWAVRQEYVAI--NPCLSVERPKRKTEGIRPWTKEDMQQFK 183
                  A    + +  +FK A     V    NP L+ ++PKR+    R    E+ Q+  
Sbjct: 145 SNGQHRMAQVIRSVLIDMFKEAQHAGEVPPGYNPALATKQPKRRITRQR-LNLEEWQKIF 203

Query: 184 SFWSE-GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL---PD 239
               +       A    + +G R  D        + ++   I  +KTG+ + + L    D
Sbjct: 204 DIADKQHKYLGNAMLLAVITGQRLGDISAMKFSDIWDDHLHITQEKTGSKLAIPLALKSD 263

Query: 240 GFMKLLAMTPIGKE---------TFFIN----NDKQKMNATQFSIWFKAKATKAGVN--- 283
                L                  +F      N  +++ A   +  FK    K  ++   
Sbjct: 264 ALNMSLREVVSRCRDRVVSQYLIHYFHTTSQANRGEQVTANTITTNFKKARNKTDIDWGE 323

Query: 284 ---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
               S H  R  S  +  + G    +L    G K   Q + Y
Sbjct: 324 GTPASFHEQRSLSERLYREQGINTKDL---LGHKNQQQTDRY 362


>gi|167762651|ref|ZP_02434778.1| hypothetical protein BACSTE_01008 [Bacteroides stercoris ATCC
           43183]
 gi|167699757|gb|EDS16336.1| hypothetical protein BACSTE_01008 [Bacteroides stercoris ATCC
           43183]
          Length = 403

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 56/280 (20%), Positives = 89/280 (31%), Gaps = 50/280 (17%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRK----HT 129
           S YR+S             +  Y  + IR  G  D  +  IT +   + +   K    H 
Sbjct: 126 SSYRQS-----------KMYHYYLGEYIRSLGKEDMLFTDITEEFGTNFILYLKTNYPHK 174

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
           PS     L  ++ L   AV    +  NP   ++  K+    +   +K  +Q+  S   + 
Sbjct: 175 PSYRNHCLCWLKRLVYLAVDNGILRYNPLDDIKYEKKAPTKLMYISKSQLQEIMSNPKQN 234

Query: 190 SQPRLA---FEFLLYSGLRCSDSCRAGVQHLQ---NNIFSIKT--QKTGTIITVELPDGF 241
               LA   F F  + GL   D       H+         I+T  +KT     + L    
Sbjct: 235 PLQELARRTFIFSCFCGLAYVDVRNLYPHHIGTTAEGRKYIRTYRKKTSVESFIPLHPVA 294

Query: 242 MKLLA------------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGV 289
            ++++              PI    +F            FS+ FK        N S H  
Sbjct: 295 EQIISLYNMTDDSQPIFPLPIRSMIWFEIQ------ELGFSLQFKH-------NLSYHQS 341

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           R    T+   AG     +    G   +   + Y K  D  
Sbjct: 342 RHTFGTLMVSAGVPMESISKMMGHTNIRTTQGYAKVTDDK 381


>gi|167752534|ref|ZP_02424661.1| hypothetical protein ALIPUT_00785 [Alistipes putredinis DSM 17216]
 gi|167659603|gb|EDS03733.1| hypothetical protein ALIPUT_00785 [Alistipes putredinis DSM 17216]
          Length = 379

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 56/280 (20%), Positives = 89/280 (31%), Gaps = 50/280 (17%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRK----HT 129
           S YR+S             +  Y  + IR  G  D  +  IT +   + +   K    H 
Sbjct: 102 SSYRQS-----------KMYHYYLGEYIRSLGKEDMLFTDITEEFGTNFILYLKTNYPHK 150

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
           PS     L  ++ L   AV    +  NP   ++  K+    +   +K  +Q+  S   + 
Sbjct: 151 PSYRNHCLCWLKRLVYLAVDNGILRYNPLDDIKYEKKAPTKLMYISKSQLQEIMSNPKQN 210

Query: 190 SQPRLA---FEFLLYSGLRCSDSCRAGVQHLQ---NNIFSIKT--QKTGTIITVELPDGF 241
               LA   F F  + GL   D       H+         I+T  +KT     + L    
Sbjct: 211 PLQELARRTFIFSCFCGLAYVDVRNLYPHHIGTTAEGRKYIRTYRKKTSVESFIPLHPVA 270

Query: 242 MKLLA------------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGV 289
            ++++              PI    +F            FS+ FK        N S H  
Sbjct: 271 EQIISLYNMTDDSQPIFPLPIRSMIWFEIQ------ELGFSLQFKH-------NLSYHQS 317

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           R    T+   AG     +    G   +   + Y K  D  
Sbjct: 318 RHTFGTLMVSAGVPMESISKMMGHTNIRTTQGYAKVTDDK 357


>gi|58616527|ref|YP_195656.1| putative integrase [Azoarcus sp. EbN1]
 gi|56315989|emb|CAI10632.1| putative integrase [Aromatoleum aromaticum EbN1]
          Length = 318

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 43/291 (14%), Positives = 97/291 (33%), Gaps = 24/291 (8%)

Query: 58  REYINSPRKKPTTLKWLISEYRKS-AHWGSLAVNSRISFESYFDQIIRK---SGDFDYRK 113
            + + S  + P  +   +  Y         L+  +R       +Q++RK    G  +   
Sbjct: 10  AQRVRSSAEIPAPIADELRRYDDHLRDVRGLSAGTRRDRCRIVEQLLRKKFADGVVNMAT 69

Query: 114 ITTKHIRSGVESR-KHTPS--SAIQFLTSMRVLFKWAVRQE--YVAINPCLSVERPKRKT 168
           +    +R  +  +   +PS  +A Q  +++R   ++          +N  +S     +  
Sbjct: 70  LRAVDVRRFIARQLGDSPSHSAAAQLASALRSYLRYRTICGDSVAGLNAVISSPVQWKLA 129

Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPRLAFEF---LLYSGLRCSDSCRAGVQHLQ--NNIFS 223
              R    + +Q+    +  G  PR  +      L  GLR  +     ++ +       +
Sbjct: 130 SLPRALRPDQVQRLLGAFPYGRWPRRGYAIVRCALDMGLRAGEIANLLIEDIDWREGTVT 189

Query: 224 IKTQKTGTIITVELPDGFMKLLA------MTPIGKETFFINNDKQ---KMNATQFSIWFK 274
           +K  K+     + LP    + LA         I     F+         +         +
Sbjct: 190 LKGTKSRRQDVLPLPMATGQALADYLQHERPAISSRAIFLCRRGSRDIPITTDAVQNVIR 249

Query: 275 AKATKAGVNKS-AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
               + G+  S +H +R   A    + G++  E+      ++++    Y K
Sbjct: 250 RACRRVGLPDSGSHLLRHTLACRLVENGSSLKEVADVLRHRSLETTRIYAK 300


>gi|293433708|ref|ZP_06662136.1| integrase [Escherichia coli B088]
 gi|291324527|gb|EFE63949.1| integrase [Escherichia coli B088]
          Length = 411

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/278 (15%), Positives = 88/278 (31%), Gaps = 49/278 (17%)

Query: 89  VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAV 148
            ++ IS+  Y D +  ++       +   + RS    +  T  +   ++  +  L ++A 
Sbjct: 119 ESTPISYIRYSDILNYRNELLHGETLYLDNPRS--NKKGRTVRTVDNYIALLCSLLRFAY 176

Query: 149 RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD 208
           +  +++  P   V++ +R      P +K +         +G    L  +F +YSGLR  +
Sbjct: 177 QSGFISTKPFEGVKKLQRNRIKPDPLSKTEFNALMES-EKGQSQNLW-KFAVYSGLRHGE 234

Query: 209 SCRAGVQHLQNNIFSIKTQKTGTIITVELPDG----------FMKLLAMTP-----IGKE 253
                 + +      +  ++  TI+ +  P                L          G  
Sbjct: 235 LAALAWEDVDFEKGIVNVRRNLTILDMFGPPKTNAGIRTVTLLQPALEALKEQYKLTGHH 294

Query: 254 -----TFFINNDKQK---------------------MNATQFSIWFKAKATKAGVNKS-- 285
                TF+     +                       + +     + A   +AG+ +   
Sbjct: 295 RKSEITFYHREYGRTEKQKLHFVFMPRMCNGKQKPYYSVSSLGARWNAAVKRAGIRRRNP 354

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETY 322
            H  R   A     AGA    + +  G +T     E Y
Sbjct: 355 YHT-RHTFACWLLTAGANPAFIASQMGHETAQMVYEIY 391


>gi|269104781|ref|ZP_06157477.1| putative integrase [Photobacterium damselae subsp. damselae CIP
           102761]
 gi|268161421|gb|EEZ39918.1| putative integrase [Photobacterium damselae subsp. damselae CIP
           102761]
          Length = 428

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/270 (13%), Positives = 77/270 (28%), Gaps = 50/270 (18%)

Query: 100 DQIIRKSGDFDYRKITTKHIRS--------GVESRKHTPSSAIQFLTSMRVLFKWAVRQE 151
           +++I      D   +  K +             S   +  +   +LT    LFK+A R E
Sbjct: 122 ERLISNITHADIMSMRLKLLNGSNFSPSPIRRTSNGRSVKTVNTYLTICSSLFKYAYRTE 181

Query: 152 YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCR 211
            +  NP   V R +       P   ++  +  +  S   Q    +   +Y+GLR  +   
Sbjct: 182 AIHTNPFDGVSRLRTVKTPPNPLEHDEFIRLINHPSIREQDVNLWTVAVYTGLRHGELSA 241

Query: 212 AGVQHLQ--------------NNIFSIKTQKTGTIITVELPDGFMKLLAMTP-------- 249
              + +                  F +   ++G      L   +  L+            
Sbjct: 242 LAWEDIDLVKRTITVKRTATQQKRFRVPKTESGERTINLLAPAYEALVRQKACTFLYPSI 301

Query: 250 -------------------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS-AHGV 289
                              + + T +    K  ++    S  ++     AG+     +  
Sbjct: 302 AVEVESRQKRNHIQEQCTWVFRMTSYSAEAKGNISTKVISNMWRKCTKLAGIAYRNPYQT 361

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQA 319
           R   A    ++GA    + +  G   +   
Sbjct: 362 RHTYACWLLNSGANPAFIASQMGHSDMSMV 391


>gi|268592711|ref|ZP_06126932.1| putative phage integrase [Providencia rettgeri DSM 1131]
 gi|291311854|gb|EFE52307.1| putative phage integrase [Providencia rettgeri DSM 1131]
          Length = 419

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 48/307 (15%), Positives = 101/307 (32%), Gaps = 34/307 (11%)

Query: 47  YMSALTGSTPKREYINSPRKKPTTL--KWLISEYRKSAHWGSLAVNSR---ISFESYFDQ 101
           Y  A      K E +   +++   +  K LI E+ +      +    +       +    
Sbjct: 82  YDVAGEIKRKKAEALELIQQEENAIRVKALIDEFYE----RQIKPKRKNPEKIKWAIDTN 137

Query: 102 IIRKSGDFDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCL 159
           II   G     ++  K I + ++S      P+ A   L +++ +F +AVR++ +  NP  
Sbjct: 138 IIPILGHKKIEEVKPKDIDNLIQSITDRGAPTVANDALRNLKRIFDYAVRRQLIESNPAS 197

Query: 160 SV---ERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLAFEFLLYSGLRCSDSCRAG 213
           +    +   R+ +  R  +++++  F          +Q ++ F+ +L +GLR  + C A 
Sbjct: 198 AFNISDAGGRENKRDRWLSRDELLVFFHALNKSDLPAQNKITFKLILATGLRKMELCAAK 257

Query: 214 VQHLQNNIFSIK----TQKTGTIITVELPDGFMKLLAMT---PIGKETFFINNDKQKM-- 264
              +  +           KTG  + + L D     L        G E        +    
Sbjct: 258 WDEIDLDNAVWHFPAERSKTGDAVDIPLSDPVTNWLTQLKEMACGSEYVLP-ARGRGSNR 316

Query: 265 -------NATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVD 317
                           +    ++    S H +R+   T  +  G            +   
Sbjct: 317 LPHISNGTLNYGLTVIRELLPESFTAFSIHDLRRTMRTHLSALGIEPQIAERCLNHRVKG 376

Query: 318 QAETYTK 324
               Y +
Sbjct: 377 IEGVYNR 383


>gi|323961326|gb|EGB56938.1| phage integrase [Escherichia coli H489]
          Length = 420

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 56/356 (15%), Positives = 114/356 (32%), Gaps = 51/356 (14%)

Query: 13  KERTRHGKIIYYFRKGHGRRIRLPYPHESTF-------IPAYMSAL-------TGSTPKR 58
           ++  +     + ++ G   R+ L   + + F       +   ++A         G   KR
Sbjct: 33  RKSDKFPNWRFRYKLGGKSRVVLIGSY-TDFSLAKAREVARELAARVSLGYDVAGEKQKR 91

Query: 59  EYINSPRKKPTT----LKWLISEYRKSAHWGSLAVNSRIS---FESYFDQIIRKSGDFDY 111
           +     + +       +  L +EY        +    +       S    I+   G    
Sbjct: 92  KAEALEKIEAQKNAKRVSDLAAEYYS----RQIEPTYKHPELFRSSLQKNIVASIGKMKI 147

Query: 112 RKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
             +  KHI   +++   + +P+ A   L  ++ LF +AV +  + +NP +S        +
Sbjct: 148 EDVRPKHIDYVLQNVLERGSPTVANDVLRMLKRLFDYAVVRGMIEVNPAISFSSKDAGGK 207

Query: 170 G---IRPWTKEDMQQFKSFWSEG----SQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNN 220
                R  T+E++  F     +G     +  L F+ +L  G+R  + C A     +L   
Sbjct: 208 EQGRKRALTREELVMFFKALRKGRGISRENELTFKIILALGVRKMELCAAEWSEFNLDEK 267

Query: 221 IFSIK--TQKTGTIITVELPDGFMKLLA--MTPIGKETFFINNDKQKMNAT--------Q 268
           ++       K G  I + L D  ++ +       G   + I   + +  +          
Sbjct: 268 VWHFPADRAKNGEEIDIPLADPVIEWIKEIRLFAGNSRWLIPARRGRTTSHVSRSTLNMV 327

Query: 269 FSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
                K          S H +R+   T  A  G            K       Y +
Sbjct: 328 LPSVLKEMPDVE--PFSIHDLRRTMRTQMAALGIDPVIAERCLNHKIPGVEGIYNR 381


>gi|253581707|ref|ZP_04858931.1| phage integrase [Fusobacterium varium ATCC 27725]
 gi|251836056|gb|EES64593.1| phage integrase [Fusobacterium varium ATCC 27725]
          Length = 357

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 49/321 (15%), Positives = 105/321 (32%), Gaps = 43/321 (13%)

Query: 57  KREYINSPRKKPT-TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKI 114
           KRE++      PT + + +   Y +      +   + I+ E  F+  I+    D     I
Sbjct: 43  KREFLVKMTSDPTMSFQSMYDLYYEDLK-VRVKYITMINKEKIFNLHILPFFKDISVSDI 101

Query: 115 TTKHIRSGVESRKHTPSSAIQF---LTSMRVLFKWAVRQEYVAINPCL--SVERPKRKTE 169
           T   IR           S          +   F +A++   +  NP       +  +  +
Sbjct: 102 TPLTIREWQNKLLKKDYSNSYIGGIQKYLNAFFNYAIKFHNLKSNPLKITGKAKLNKPKK 161

Query: 170 GIRPWTKEDMQQFK-SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--- 225
            +  W   + ++F  +F  E    R  F  L Y G R  +     +  +     +I+   
Sbjct: 162 EMEIWEPHEFEKFIGTFLKEDYLHRSFFSLLFYGGFRIGEVLALRLDDIDFKNSTIRVDE 221

Query: 226 ---------------TQKTGTIITVELP--DGFMKLLAMT-PIGKETFFINNDKQKMNAT 267
                          T+K+  ++ + L   +   K +     I    F  +  +     +
Sbjct: 222 TKTFVTKDAIINSPKTEKSNRVVDMPLSVMEILKKHIKTLYGIENRDFIYSRHQ-----S 276

Query: 268 QFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKG 325
                 +    KAG+ N   H +R    ++    G    ++    G         TY+  
Sbjct: 277 SIRNNLRRHLKKAGLKNIRIHDLRHSHVSMLIHMGVNVVDIADRVGHDNPTTTLNTYSH- 335

Query: 326 ADRIRLGIKNSRRISSVVDSD 346
                +   N ++I+ +++++
Sbjct: 336 -----MYSNNGKKIADLLENN 351


>gi|240139370|ref|YP_002963845.1| hypothetical protein MexAM1_META1p2815 [Methylobacterium extorquens
           AM1]
 gi|240009342|gb|ACS40568.1| conserved hypothetical protein [Methylobacterium extorquens AM1]
          Length = 541

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 51/308 (16%), Positives = 104/308 (33%), Gaps = 45/308 (14%)

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127
           P  L  L+  + + A     +V++R ++   F  + R  G  D  ++T + I    + R 
Sbjct: 222 PAKLSALVEAWWREAERTGKSVSTREAYAHAFRLLTRFLGHDDAHRVTKQDIVRFKDHRL 281

Query: 128 HTP----------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI--RPWT 175
            +           +     L +++ +F WA    +VA NP + V   K     +  R +T
Sbjct: 282 ASRKRNGELVSATTVKNSDLAALKAVFGWAHDNGHVAGNPAVGVTVAKAAKVKLREREFT 341

Query: 176 KEDMQQFKSFWSEGSQPR---------LAFEFLL-YSGLRCSDSCRAGVQHLQ------- 218
            E+ +         +  R             ++L ++G R  +  +   Q L+       
Sbjct: 342 AEEARTLLRAALHLTPGRELPQTYAAKRWIPWVLAFTGARVGEIAQMRRQDLRREAVAGY 401

Query: 219 -NNIFSIK------TQKTGTIITVELPDGFMKL-----LAMTPIGKETFFINNDKQKMNA 266
            + ++ ++      T KT     V L    ++L     +      +     +   +    
Sbjct: 402 PDGVWMLRITPEAGTVKTKQARDVPLHPQLVELGFPAFVQAVRAERLFIVPDAAGRVAGP 461

Query: 267 -TQFSIWFKAKATK--AGVNKSA-HGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
                      A +  +    S  H  R    T++ +AG   + + A  GW      E Y
Sbjct: 462 LQGVKNRLSEFARQYVSDPGVSPNHSWRHRFRTVATEAGIAGNVIDALCGWSARSVGERY 521

Query: 323 TKGADRIR 330
              + + R
Sbjct: 522 GSVSLKAR 529


>gi|150399016|ref|YP_001322783.1| phage integrase family protein [Methanococcus vannielii SB]
 gi|150011719|gb|ABR54171.1| phage integrase family protein [Methanococcus vannielii SB]
          Length = 326

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 50/301 (16%), Positives = 91/301 (30%), Gaps = 34/301 (11%)

Query: 71  LKWLISEYRKSAHWGSLAVNSR---ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127
           +  L+ E+     +  +   +          F +    + +     +T K   +     K
Sbjct: 27  IDNLVEEFSAQRRFDGIKDATIDNDNDRIKVFLRYSYYTLNKTPDTLTDKDYFAFFTYLK 86

Query: 128 H-------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED-M 179
                   T +   + L     L K++   ++V        +R  R          ED +
Sbjct: 87  RERNCSDNTVNKYFKLLKVFYRLMKYSNFNDFVTE--SKERKRFSRFDIKHYDAIDEDTL 144

Query: 180 QQFKSFWSEG---SQPRLA-FEFLLY-SGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTI 232
                   E    ++ R A F  LL+ +G R S+ C        L   +F +   KT   
Sbjct: 145 NTILKKLLEANGDTKIRDATFMRLLWDTGCRVSEVCNLTYSASDLNKGVFKLTNTKTKQD 204

Query: 233 ITVELPDGFMKLL------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA 286
            TV      +KLL            ++  F +    KMN    S  F+    +   N + 
Sbjct: 205 RTVVCSKETLKLLNYFLQHDSKNAPEDYLFKSGRGAKMNKYTLSARFRDIVVELKKNGTI 264

Query: 287 --------HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338
                   H +R   A      G     +    G  +++    Y+   DR    +    +
Sbjct: 265 PKNRWLVIHSLRHGRAVDLLGKGVPIDVVKEYLGHTSIETTLIYSHSTDRKNKMLDQISK 324

Query: 339 I 339
           I
Sbjct: 325 I 325


>gi|264677668|ref|YP_003277574.1| phage integrase [Comamonas testosteroni CNB-2]
 gi|262208180|gb|ACY32278.1| phage integrase [Comamonas testosteroni CNB-2]
          Length = 394

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 48/280 (17%), Positives = 91/280 (32%), Gaps = 33/280 (11%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYF--DQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132
           +  Y +    G ++ ++   +      +++ R  G     ++    +R  V     T  +
Sbjct: 99  LDTYARQVKNGQMSPSTYNGYAKAITGERMRRWHG-LKVGEVLPSLLRDWVSEMDCTSKA 157

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-------PWTKEDMQQFKSF 185
               LT +R LF+ A+  E +  NP   +   K   +  +       P++  + +     
Sbjct: 158 IRNMLTPLRSLFEDALNDELIDFNPFERIALSKLIRQTAKASDYVVTPFSAAERETILKA 217

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-----------FSIKTQKTGTII- 233
                  R   +F   +GLR  +       H+                 IK  KT   I 
Sbjct: 218 CRP--DERPMLQFWFETGLRPGELQALQWSHIDWERSVARIELNQVAGVIKGPKTAAGIR 275

Query: 234 TVELPDGFMKLLAMTPI----GKETFFINND-KQKMNATQ--FSIWFKAKATKAGVNKS- 285
            VEL    +  L           E  ++N    +  +         ++    +A V    
Sbjct: 276 DVELSAEALAALHAQRPISELKGERIWLNPRTGEPWSTDAQIRKTLWQPVCKRAEVEYRN 335

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
            + VR   A+    AGA    + +  G + V+    TY K
Sbjct: 336 PYQVRHTYASALLTAGANPWYVASQLGHEDVEMVFRTYGK 375


>gi|156933782|ref|YP_001437698.1| hypothetical protein ESA_01608 [Cronobacter sakazakii ATCC BAA-894]
 gi|156532036|gb|ABU76862.1| hypothetical protein ESA_01608 [Cronobacter sakazakii ATCC BAA-894]
          Length = 427

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/245 (12%), Positives = 75/245 (30%), Gaps = 47/245 (19%)

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +  T S+   ++  +  + ++A   +Y+ +NP  ++   KR      P TK++ ++  + 
Sbjct: 153 KGRTASTVNYYMLVINGILEFASHNDYIPVNPMRNITSLKRAKSEPDPLTKDEFERLIAA 212

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS------------IKTQKTGTII 233
                   L     +++G+R  + C    + +     +                KT    
Sbjct: 213 CDNRQLKNLW-SLAVFTGMRHGEICALAWEDVDLKAGTISVTRNYTAARNFTPPKTDAGT 271

Query: 234 T---------VELPDGFMKLLAMTPIGKETFFINNDKQKMNAT----------------- 267
                     + +     +L  +      +  +    +K                     
Sbjct: 272 DRKIVLIDAAIAVLRDQAELTRLGKQHDISVALREYGKKRLDKCTFVFSPAVYTKNPHCG 331

Query: 268 ------QFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA- 319
                   +  + +   +AG+ ++ A+  R   A  +  AGA  + +    G        
Sbjct: 332 INYATGSLNQSWASAMRRAGIRHRKAYQSRHTYACWALSAGANPNFIAGQMGHANARMVY 391

Query: 320 ETYTK 324
           + Y K
Sbjct: 392 QVYGK 396


>gi|170731520|ref|YP_001763467.1| integrase family protein [Burkholderia cenocepacia MC0-3]
 gi|169814762|gb|ACA89345.1| integrase family protein [Burkholderia cenocepacia MC0-3]
          Length = 369

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 45/342 (13%), Positives = 99/342 (28%), Gaps = 43/342 (12%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHE------STFIPAYMSALTGSTPKREYINSPRKK 67
           +R R     Y      G +                F     ++L                
Sbjct: 5   KRERSSNWYYKLYPPGGGKPLQGSTGTNDKARAQEFHDRLKASLWDQAKLGHTPQ----- 59

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSR---ISFESYFD-QIIRKSGDFDYRKITT-KHIRSG 122
             T    +  Y +     +    ++      +++ D +++          I   K     
Sbjct: 60  -YTWNDAVVAYLEDREGIASIETTKIHLRWLDTHLDGELLVNIDRDRIDAIERAKRAEPV 118

Query: 123 VESRKHTPSSAIQFLTS---------MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
           +   +  P    + +++         +  +   A  + ++A  P    +R K   + IR 
Sbjct: 119 IVRTRSGPKPTGKTVSAATVRRVGGVIIAVLNHAAERGWIARAPVR--KRKKSTAKRIRW 176

Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN----NIFSIKTQKT 229
            ++ +  +  +   E       F   L +GLR ++        +              K 
Sbjct: 177 LSQAEAGRLLAQLPEHLAAMAQF--SLETGLRRANVTGLQWSQVDLVRRVAWIHPDQAKA 234

Query: 230 GTIITVELPDGFMKLLAMTPIGK------ETFFINNDKQKMNATQFSIWFKAKATKAGV- 282
              ITV L +  + +L      K      E+ F+   K        +  ++    +A + 
Sbjct: 235 RKAITVPLSETAVAVLRQQLAKKRRAEHVESVFV--YKGSPVYQTTTEAWRKALKRAHIK 292

Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +   H +R   A+     G     L    GW+T++  + Y  
Sbjct: 293 DFRWHDLRHTWASWHVQRGTPLQVLKELGGWETMEMVQRYAH 334


>gi|329296095|ref|ZP_08253431.1| putative phage integrase [Plautia stali symbiont]
          Length = 312

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/305 (13%), Positives = 95/305 (31%), Gaps = 52/305 (17%)

Query: 68  PTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD-FDYRKITTKHIRSGVE- 124
             +  WL  E      +  SL  ++  S++       +  G+      IT++ +      
Sbjct: 3   ENSADWLWQELMDEYFFCKSLREDTEWSYKKVVRGFRKHIGEACPPYDITSRDVLEWRRH 62

Query: 125 ---SRKHTPSSAIQFLTSMRVLFKWAVRQEY--VAINPCLSVERPKRKTEGIRPWTKEDM 179
               +  +  +    ++ MR L+ +A+  +   ++ NP   V   K+  +  +  TK  M
Sbjct: 63  VLKKQCLSAHTWNNKVSHMRALYNFAITSQLTNLSKNPFNGV-SVKQDKKRKKTLTKNQM 121

Query: 180 QQF-KSFWSEGSQPRL--------------AFEFLLYSGLRCSDSCRAGVQHL--QNNIF 222
            +   +     S+PR                 + L Y+G+R +      ++ +   +   
Sbjct: 122 TKIWLTMQQFASEPRTESKCALRPVWYWLTVLDTLRYTGMRQNQLLHIRLKDVCLDDGWI 181

Query: 223 SIKTQKTGTIITVELP----------DGFMKLLAMTPIGKETFFINND-----------K 261
            ++ + + T     +P              +         ++ F                
Sbjct: 182 ELRAEGSKTYREWRVPVVSHLRPRLEALLQRARDCGAGNNDSLFHYERFASSPADWASLS 241

Query: 262 QKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMA---TYGWKTVDQ 318
           +K +      +F+  + + G + S H  R   AT    +      L       G + V  
Sbjct: 242 EKPSLQPLRSFFRRLSKECGFDVSPHRFRHTLATTLMSS--PERNLQLVKGLLGHRNVST 299

Query: 319 AETYT 323
              Y 
Sbjct: 300 TMEYV 304


>gi|303239646|ref|ZP_07326171.1| integrase family protein [Acetivibrio cellulolyticus CD2]
 gi|302592817|gb|EFL62540.1| integrase family protein [Acetivibrio cellulolyticus CD2]
          Length = 333

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/310 (13%), Positives = 96/310 (30%), Gaps = 40/310 (12%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK-----------SGDFDYRKITTK- 117
           +L+     +       +L+ ++   +E    + I+              DF+   I    
Sbjct: 9   SLRDSFELFLDRCERENLSPSTIKFYEDNMKRFIKYLSIEHNLQNPLIPDFNSVHINKYL 68

Query: 118 -----------HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
                      H        K    S   +  ++R +  W   ++Y++ N   +V+ PK 
Sbjct: 69  AKIKKSKKWNGHTHIKAREEKVGSQSIKTYARALRAIGNWFFTEDYISENIIETVDLPKA 128

Query: 167 KTEGIRPWTKEDMQQ----FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222
                     ++++     F +    G +  + F     +G+R        +  +     
Sbjct: 129 AKSDKEVLCDDEIKAIITKFDTKTKLGLRNSIIFLLAFDAGIRQGGIANLKIGDVDLKAK 188

Query: 223 SIKTQ-KTGTIITVELPD-------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274
           +++ + K G I  + L +        ++          E    N +  K+        F 
Sbjct: 189 TLRVRLKGGNITVLPLGNTVLWQIKEYIVKYRGIDNLNEPLLTNINGSKLTENAIKKMFS 248

Query: 275 AKATKAG-VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR----I 329
               K+G +  + H  R   AT     G T  EL      ++   ++ Y    ++     
Sbjct: 249 KLKKKSGVIRVNCHLGRHTFATNYISEGHTQQELQLALAHESDTMSKEYVHLDEKINYVR 308

Query: 330 RLGIKNSRRI 339
           R    +  ++
Sbjct: 309 RGADSHMDKM 318


>gi|325474369|gb|EGC77557.1| DNA integrase [Treponema denticola F0402]
          Length = 426

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 47/304 (15%), Positives = 93/304 (30%), Gaps = 57/304 (18%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----KHTPSSAIQFLTSM 140
              +  +  ++  +  + IR++ + + + ++   I + V       K   SS  Q L ++
Sbjct: 122 KHYSKRTMEAYSYWISRFIRENKNKNLKTLSDTEINAFVSRLAVKEKAAASSQNQALAAL 181

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200
             L+K           P  ++ R K+  +     T+E+  +  S   E     L    L 
Sbjct: 182 LFLYK--NILGLTIKTP-ENIVRAKKPKKLPAIMTREETAKIFSLLPENDYGLLIR-LLY 237

Query: 201 YSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTII------------------------- 233
            +G+R  ++ R  +Q +    N  ++   K                              
Sbjct: 238 GTGMRLMEALRLRIQDIDFGKNEITVHCGKGAKDRKTVLPVSLKFPLQKHLENVRLIHEA 297

Query: 234 -------TVELPDGFMKLLAMTPIG--------KETFFINN-----DKQKMNATQFSIWF 273
                  +V LP    K                +   + N       +  ++ +      
Sbjct: 298 DCKDGFGSVPLPSALAKKYPAAGKAWAWQWVFPQARRWQNKETGEQGRHHIDPSVIQRTL 357

Query: 274 KAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
                K+G+ K    H  R   AT   +A      +    G   V     YT   +R  L
Sbjct: 358 HEAVLKSGIPKPIGCHTFRHSFATHLLEASYDIRTIQELLGHSDVKTTMVYTHVLNRGSL 417

Query: 332 GIKN 335
           GI++
Sbjct: 418 GIQS 421


>gi|256393762|ref|YP_003115326.1| integrase family protein [Catenulispora acidiphila DSM 44928]
 gi|256359988|gb|ACU73485.1| integrase family protein [Catenulispora acidiphila DSM 44928]
          Length = 353

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 51/333 (15%), Positives = 107/333 (32%), Gaps = 71/333 (21%)

Query: 61  INSPRKKPTTLKWLISEYRKSAHWG----SLAVNSRISF-------------ESYFDQII 103
                  P ++   +  YR + H      +++  +R ++             +   D + 
Sbjct: 2   AAPKPFTPISVAEAVHRYRDTLHLRVATGAMSPATRDAYVRDLTEAATLLGLDKALDDVE 61

Query: 104 RKSGDFDYRKITTKHIRSGVESRKHTPS----------SAIQFLTSMRVLFKWAVRQEYV 153
            +  ++   +I     R    +RK  P           +  ++  ++R LF WA  Q YV
Sbjct: 62  AEDVEYALVRIANAPDRRYTRTRKAGPGGEPAPGRGLQARARWTAAVRGLFAWAAEQGYV 121

Query: 154 AINPCLSVERPKRKTEGIRP---WTKEDMQQFKSFWSEGS-------------QPRLAFE 197
             +P   V R +  T  +      T E  Q  +   +  +             +  +   
Sbjct: 122 RADPMPHVSRVRVPTRAVGARLGLTVEQAQALQETPAVAASRSELRADQRLTIRDEVILR 181

Query: 198 FLLYSGLRCSDSCRAGVQHLQNN------IFSIKTQKTGTIITVEL-------PDGFMKL 244
            L  +G R ++ C A +  ++ +      +  I+  K G    V L        + + + 
Sbjct: 182 LLTETGPRVAEVCAANLDDVRQHELTGMPVLRIRAGKGGRSRDVPLSQTLVSMLEQYQQH 241

Query: 245 LAMTPIGKE----------TFFINNDKQKMNATQFSIWFKAKATK--AGVNK--SAHGVR 290
               P   +             +    ++M A       + +  +  A + +  + HG+R
Sbjct: 242 ERPAPPAGDAEADRSDAARALLVTIRGRRMTARDVQRMVERRVKQMPAQLRRAVTPHGLR 301

Query: 291 KFSAT-ISADAGATAHELMATYGWKTVDQAETY 322
             +AT +   AGA    +    G   V     Y
Sbjct: 302 HTAATVLLRQAGADVGTVADILGHADVGTTSVY 334


>gi|227872383|ref|ZP_03990731.1| possible tyrosine recombinase [Oribacterium sinus F0268]
 gi|227841772|gb|EEJ52054.1| possible tyrosine recombinase [Oribacterium sinus F0268]
          Length = 358

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/238 (15%), Positives = 79/238 (33%), Gaps = 31/238 (13%)

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS- 190
           S  + ++S++  F +  + E +  N    +  PK   E I    + ++ QF      G  
Sbjct: 116 SIKRKISSLKSFFGYLYKTEQIKENKTALLSLPKLSQEEIVRMDQGEVAQFLDQVESGED 175

Query: 191 --------------QPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIIT 234
                         +     + +L +G+R S+        +   NN   I  +K G  ++
Sbjct: 176 LSKKEKLYHEKNQVRDLAMMQLMLGTGIRVSECVGLNCSDVDFQNNAIRIH-RKGGKEVS 234

Query: 235 VELPDGFMKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-- 282
           +   D   + L                +   F++   ++M+     +  K  A K     
Sbjct: 235 IYFSDEVEQGLRAYMEERKSKIPAAGHENALFLSLQNKRMSVRTVELMVKKYAQKVTPLK 294

Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRI 339
           + + H +R    T         + +    G   V+   + Y    +  R  ++N  R+
Sbjct: 295 HITPHKLRSSYGTNLYQETGDIYLVADVLGHSDVNTTKKHYAALEEERRRSVRNLVRL 352


>gi|170742030|ref|YP_001770685.1| integrase family protein [Methylobacterium sp. 4-46]
 gi|168196304|gb|ACA18251.1| integrase family protein [Methylobacterium sp. 4-46]
          Length = 380

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 51/345 (14%), Positives = 117/345 (33%), Gaps = 53/345 (15%)

Query: 19  GKIIY---YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75
           GKI +   Y   G  RR R     +     A+++     +     ++ P  +  T+    
Sbjct: 12  GKIAWLASYTDGGGKRRFRQFATRKEA--DAFLT--RARSEVAHGVHIPDSQSMTVGQAA 67

Query: 76  SEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKH---IRSGVESRKHTPS 131
             + K A  G L  ++ + ++ +  + I    G     ++TT         + ++  +P 
Sbjct: 68  DAWLKHAEEGGLEWSTVLHYQQHVNEHIRPLIGSLRLTQVTTPRVYSFAEELRAKGRSPE 127

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW--TKEDMQQFKSFWSEG 189
              + + S+  +F++A  +     NP   V+  + K +  R    T+E+++         
Sbjct: 128 MVRRAVQSLGRIFRFAKGRGLAGQNPVADVKLKRSKRDQARVEIPTREELRAILGAAQ-- 185

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ----------KTGTII-TVE 236
            + R      +++ LR S+        +     + +++ +          K+      V 
Sbjct: 186 GRWRPLIVTAMFTALRASELRGLRWSDVDLKRRVLTVRQRADAWKRIGPPKSEAGTRDVP 245

Query: 237 LPDG----FMKLLAMTPIGK-ETFFINNDK----------QKMNATQFSIWFKAK----- 276
           L         +     P G+ +  F +             +    TQ +           
Sbjct: 246 LAPMVVNTLREWRLACPKGELDLVFPSGAGQVEHHPNIIARGWEPTQIAAGVVEMVDGKD 305

Query: 277 -----ATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTV 316
                A  A    + H +R  +A++  ++G T   + A  G  ++
Sbjct: 306 KAGNPAKAAKGRYNFHALRHAAASMFIESGMTPKRVQAIMGHSSI 350


>gi|254446471|ref|ZP_05059947.1| integron integrase subfamily [Verrucomicrobiae bacterium DG1235]
 gi|198260779|gb|EDY85087.1| integron integrase subfamily [Verrucomicrobiae bacterium DG1235]
          Length = 422

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/295 (12%), Positives = 85/295 (28%), Gaps = 58/295 (19%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----SRKHTPSSAIQFLTSM 140
              + N+  ++  +  +            +  ++  S        ++   S+  Q  +++
Sbjct: 119 RQYSTNTLRTYVMWVRRFQDYLKGKAVVAVDAENAASFFTYLACEKRVVASTQNQAFSAL 178

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200
             LF+  +++ +        V R +R        ++ ++       +      LA   + 
Sbjct: 179 LFLFRHVLKRRFEGF---EGVVRARRTKYIPVVLSRAEVDAVFEQLTHPFD--LATRLMY 233

Query: 201 YSGLRCSDSC--RAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT---------- 248
             GLR  +    R G  +    I ++   K     TV LP   M+ L             
Sbjct: 234 GCGLRLFEVVNVRVGSLNFGAGILTVHDGKGRKDRTVPLPRCLMQDLERQVRRVRIQLGR 293

Query: 249 --------------------------------PIGKETFFINNDKQKMN---ATQFSIWF 273
                                           P  K T     ++++       +     
Sbjct: 294 DIEGGFDGVFMPGSMDRKGGSLAKELPWQWLFPYRKLTLVRGTEERRRYHAHEKKLGAAI 353

Query: 274 KAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           +  A + G+ K  +AH  R   A+   +A      +    G  +++    YT   
Sbjct: 354 REAARRVGLAKRVTAHTFRHSFASHLLEANYDIRTIQELLGHSSLETTMIYTHTV 408


>gi|154492804|ref|ZP_02032430.1| hypothetical protein PARMER_02443 [Parabacteroides merdae ATCC
           43184]
 gi|154087109|gb|EDN86154.1| hypothetical protein PARMER_02443 [Parabacteroides merdae ATCC
           43184]
          Length = 310

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 46/253 (18%), Positives = 89/253 (35%), Gaps = 24/253 (9%)

Query: 96  ESYFDQIIRKSGDFD-----YRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQ 150
           +   D  +R  G+ D              R  ++   + P++  + L  +  L   AV Q
Sbjct: 54  DKQLDAFVRSRGEEDILLTALTMDFFDDYRFHLKKEGYAPATINKHLCWLSRLMYRAVSQ 113

Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF--WSEGSQ-PRLAFEFLLYSGLRCS 207
             +  NP    +    + +  R  +K D+ +  +F    EG++  R  F F +++GL  +
Sbjct: 114 GTIRFNPFEEAKYEAVERK-PRFLSKGDVAKLLAFPLQDEGAELSRRMFLFSVFTGLAFA 172

Query: 208 DSCRAGVQHLQNN-----IFSIKTQKTGTIITVELPDGFMKLL----AMTPIGKETFFIN 258
           D     V  ++ N           QKT     + L     ++L         G    F +
Sbjct: 173 DLQSLRVSQIEKNNEGKRYIRKARQKTEVESLIPLHPIAEQILSLYTKEESKGDYKIFPD 232

Query: 259 NDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTV 316
                M+  +     KA     G+    + H  R    T++ +AG     +    G  ++
Sbjct: 233 T----MSKGKLLTHLKAVGWACGIRTPLTWHVGRHSFGTLTLEAGIPIESIAKMMGHSSI 288

Query: 317 DQAETYTKGADRI 329
              + Y +  D+ 
Sbjct: 289 ASTQIYAQITDQK 301


>gi|306833636|ref|ZP_07466763.1| phage integrase family site-specific recombinase [Streptococcus
           bovis ATCC 700338]
 gi|304424406|gb|EFM27545.1| phage integrase family site-specific recombinase [Streptococcus
           bovis ATCC 700338]
          Length = 400

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 44/288 (15%), Positives = 93/288 (32%), Gaps = 34/288 (11%)

Query: 70  TLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--R 126
           T +  +++ Y ++      +V  + +   +    I+  G    + IT +   +       
Sbjct: 78  TFENYMNKIYLRAYKQKVQSVTYKTALPHH-KLFIQYFGLKSLKAITPRDCEAFRLHIIE 136

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            ++ + A    +  +    +A R  Y++  PC +++ P+ K      WT  + Q+F   +
Sbjct: 137 NYSENYAKNLWSRFKACMGYAERLGYISNMPCKALDNPRGKHPETPFWTYAEFQKFIKSF 196

Query: 187 SEGSQPRL----AFEFLLYSGLRCSDSCRAGVQHLQ-----------------NNIFSIK 225
                  L    A      +G+R S+      + +                   N +   
Sbjct: 197 DLHDYEELQRFTAIWLYYMTGVRVSEGLSLYWEDIDFDKKFLKVHTTLEKDENGNWYRKD 256

Query: 226 TQKTGT-IITVELPDGFMKLLAMT-----PIGKETFFINNDKQKMNATQFSIWFKAKATK 279
             KT      +EL D  +++L +            F I+        +      K KA +
Sbjct: 257 QTKTPAGERLIELDDITIEVLQIWRKSQFANQDTDFIISRFGDPFCKSTICRIIKRKAQQ 316

Query: 280 AGVNK-SAHGVRKFSATISADAG-ATAHELMATYGWKTVDQA-ETYTK 324
            GV   +  G+R   A+   +        +    G         TY+ 
Sbjct: 317 VGVPVITGKGLRHSHASYLINVLKKDILYVARRMGHADKSTTLNTYSH 364


>gi|302387995|ref|YP_003823817.1| integrase family protein [Clostridium saccharolyticum WM1]
 gi|302198623|gb|ADL06194.1| integrase family protein [Clostridium saccharolyticum WM1]
          Length = 404

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 57/372 (15%), Positives = 107/372 (28%), Gaps = 72/372 (19%)

Query: 19  GKIIYYFRK--GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76
           GK  Y  R     G+R+ L            + A           +SP  K    KWL+ 
Sbjct: 18  GKEYYRTRIEDADGKRVALYGRTREELYDKVLEAREQIEDNTFRRSSPTVKEYCEKWLL- 76

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQ 135
              +SA    +   +   + S  ++ II+  G  +   +T   IR  +       +S  +
Sbjct: 77  --LQSAQ---VRATTLTDYTSKVNRHIIKPLGHMNIADVTADDIRLALVPVSKKSASVYK 131

Query: 136 FLTSM-RVLFKWAVRQEYVAINPCLSV--ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
            +  + + +F  A   + +  NP + +  +      +   P T + +++       G  P
Sbjct: 132 SVNILYKSIFAAAKESKVIQDNPTIYLSGKNGGVPQKEKNPLTDDQVERLLDAI-RGLPP 190

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHL-------------------QNNIFSIKTQKTGTII 233
            +     LY+GLR  +        +                      +   + +      
Sbjct: 191 YVFVMLGLYAGLRREEILALQWDSVFLDEAAPYLTVCRAWHTEHNRPVIMSELKTKAAHR 250

Query: 234 TVELPDGFMKLLAMTP--IGKETFFINNDKQKMNATQF---------------------- 269
            V LPD   K L         +    N++ + ++ TQF                      
Sbjct: 251 DVPLPDCLAKCLREAKENSTSDYVVANSEGEPLSYTQFKRLWQYIVTRTVKERSYYRYEN 310

Query: 270 SIWFKAKAT-----KAGVNK----------SAHGVRKFSATISADAGATAHELMATYGWK 314
               K         +A  N           + H +R    T    A      +    G +
Sbjct: 311 GKRVKHTVKPVLGERAAHNGKVVYSLDFEVTPHLLRHTYITNLIHASVDPKTVQYLAGHE 370

Query: 315 TVDQA-ETYTKG 325
                 + Y K 
Sbjct: 371 NSKITMDIYAKA 382


>gi|120405318|ref|YP_955147.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
 gi|119958136|gb|ABM15141.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
          Length = 373

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 51/300 (17%), Positives = 94/300 (31%), Gaps = 33/300 (11%)

Query: 50  ALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGD 108
            L   TP  +     + K  TL    +++ +     ++   +R S+       I  + G 
Sbjct: 57  ELDTWTPPAQRAAEVKAKAVTLGEYSTKWIED---RNVKPRTRSSYRDILRLHIEPRLGS 113

Query: 109 FDYRKITTKHIRSGVESRK-HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167
              + +T + +RS         P         +  +   AV    +  NPC ++ R    
Sbjct: 114 MAMKNLTGEVVRSWYAGLGTDYPRRNSHAYGLLHAVCATAVSDGLLQSNPC-NIRRAMNP 172

Query: 168 TEGIRP--WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-------- 217
                P      D+    +   +  + R       + G+R  +      + L        
Sbjct: 173 PRRRDPVILAVADIAAL-AEAIQPRRLRCLVLLAAWCGVRWGEVSELRRKDLSDGCEVLS 231

Query: 218 -------QNNIFSIKTQKTGTIITVELPDGFMK------LLAMTPIGKETFFINNDKQKM 264
                  ++ ++ + T K+G    V +P    +         +    +   F       M
Sbjct: 232 VSRAVTRRDGVYRVDTPKSGKGRAVVIPPHIREDVINHLAENVESGPESLLFPAARGGHM 291

Query: 265 NATQFSI-WFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           N   FS  +F       G      H +R F+ T +A   A   E MA  G  TV  +  Y
Sbjct: 292 NDRVFSREYFSDALKAIGRQGVRVHDLRHFAGTQTAQV-ANLAESMARLGHSTVKASLIY 350


>gi|2654007|gb|AAD03774.1| integrase [Mycobacterium phage Ms6]
          Length = 372

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 51/284 (17%), Positives = 100/284 (35%), Gaps = 42/284 (14%)

Query: 91  SRISFESYF-DQIIRKSGDFDYRKITTKHIRSG---------VESRKHTPSSAIQFLTSM 140
           +   +E Y  + I    GD    K++ + I             +   H P +       +
Sbjct: 92  TIDKYEQYLANDIEPNLGDIPLSKLSEEDIARWVKVMETTGGRDGNGHAPKTLRNKYGFL 151

Query: 141 RVLFKWAVRQEYVAINPCLSVERPK---RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE 197
                 AV + Y++ NP      P+      + IR  T  +  + +   +     +L  +
Sbjct: 152 SGALNAAVPR-YLSTNPASGRRLPRGNAEDDDEIRMLTHAEFDRLRD--AVTPHWKLMVQ 208

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ---------------KTG-TIITVELPDGF 241
           F++ +GLR  +      +H+     +I+ +               KT  +  TV++P   
Sbjct: 209 FMVSTGLRWGEVSALQPRHVDLETSTIRVRQAWKYSSAGYVLGPPKTKRSRRTVDVP--- 265

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIW-FKAKATKAGV--NKSAHGVRKFSATISA 298
            +LL    +  E  F+N D   +    F    +     KAG+    + H +R   A+   
Sbjct: 266 ARLLERLDLSNEFVFVNTDGGPVRYPGFLRRVWNPAVEKAGLVPRPTPHDLRHTYASWQL 325

Query: 299 DAGATAHELMATYGWKTVD-QAETYTKGADR--IRLGIKNSRRI 339
             G     +    G +++    +TYT   DR   R+  +    +
Sbjct: 326 TGGTPVTIVSRQLGHESIQITVDTYT-DVDRTSSRVAAEFMDGL 368


>gi|120597161|ref|YP_961735.1| phage integrase family protein [Shewanella sp. W3-18-1]
 gi|120557254|gb|ABM23181.1| phage integrase family protein [Shewanella sp. W3-18-1]
          Length = 422

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 55/339 (16%), Positives = 101/339 (29%), Gaps = 47/339 (13%)

Query: 50  ALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRIS---FESYFDQIIRKS 106
           A  G  P  E          T+  L  ++     +   A   +        Y   I    
Sbjct: 75  AKQGIDPLAERERQQEITIKTVNDLFDDW-----YQCTAPRLKHPEIPMRMYTKDIKPAI 129

Query: 107 GDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS---V 161
           G      +  + IR+ +    + + P+ A + L   + LF  A + +  + NP  +    
Sbjct: 130 GQLKVTDVNARDIRAILHKVVKSNRPTVANKTLLFCKQLFNHACKLDVASGNPAAAFNTA 189

Query: 162 ERPKRKTEGIRPWTKEDMQQ----FKSFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQH 216
           +    +    R  +  ++       ++     S    LA   LL  G+R  +   A    
Sbjct: 190 DAGGLEKNRTRVLSLNEIAAAFPVLRNSRPIFSHENYLAVALLLCLGVRKGELIAAKWSE 249

Query: 217 LQNNIFSIK----TQKTGTIITVELPDGFMKLL---------------AMTPIGKETFFI 257
              N    +      KTG  IT+ L +  ++ L               A     +  +  
Sbjct: 250 FDFNQQVWRMPKERSKTGVGITIPLSEFVIEWLKELKIIACGSEYVFPARKASKRREYIA 309

Query: 258 NNDKQKMNATQFSIW-------FKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMA 309
           N+      A  F          F+    K GV   + H +R+   T+ A      H    
Sbjct: 310 NDTLNHALAKLFGQKHDSNKQPFENLLGKVGVEHFTVHDLRRTCRTLLASLKVPPHIAER 369

Query: 310 TYGWKTVDQAETYTK--GADRIRLGIKNSRRISSVVDSD 346
               K      TY      +  R  +     + S + ++
Sbjct: 370 CLNHKLKGIEGTYNHHDYLEERREALDKLAALISPIINN 408


>gi|329122255|ref|ZP_08250843.1| xylulose-5-phosphate/fructose-6-phosphate phosphoketolase
           [Haemophilus aegyptius ATCC 11116]
 gi|327473816|gb|EGF19233.1| xylulose-5-phosphate/fructose-6-phosphate phosphoketolase
           [Haemophilus aegyptius ATCC 11116]
          Length = 341

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/239 (15%), Positives = 90/239 (37%), Gaps = 15/239 (6%)

Query: 98  YFDQIIRKSGDFDYRKITTKHIRSG------VESRKHTPSSAIQFLTSMRVLFKWAVRQE 151
           +      + G+     +T++ I++          +  +P++  ++ +S+      A +  
Sbjct: 83  HAKYWRDEIGNKLLSSLTSEDIQNAIPTHVVRTGKILSPATQNRYRSSIMRAINLAKQAG 142

Query: 152 YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCR 211
           ++ + P   + +     + IR  T+++ ++     +      +  +F L +G R ++   
Sbjct: 143 WIDVVP--YIAKSSEPKKRIRWITEKEAERLLDSLNLNWMKDVC-QFALLTGARMTEILS 199

Query: 212 AGVQHLQ-NNIFSIKTQ---KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT 267
                +   N  +I T    K+G   ++ L D  + L+      + + ++ +        
Sbjct: 200 MTWDKINFANKMAIVTGDIAKSGRGRSLPLSDDAINLIKERMKYQVSPYVFHSGTGKLRD 259

Query: 268 QFSIW-FKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             S   FK    +A + N   H +R   A+     G     L    GW+T++  + Y  
Sbjct: 260 DISRRDFKRALQRANIKNFRFHDLRHTWASWHIQRGTPLMVLKELGGWETIEMVQKYAH 318


>gi|310767369|gb|ADP12319.1| prophage lambda integrase [Erwinia sp. Ejp617]
          Length = 357

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/284 (14%), Positives = 96/284 (33%), Gaps = 35/284 (12%)

Query: 70  TLKWLISEYRKSAHWG----SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
           T+   +  Y +          + +NS    +   + + + SG    + +T   +   +++
Sbjct: 60  TVTTWLDRYLEIQQERLESGEIKINSVKQKKKPVELLRQHSGMLYLKDVTALEVAEIIDA 119

Query: 126 RKHTPSSAIQFLTSMRV--LFKWAVRQEYVAI--NPCLSVERPKRKTEGIRPWTKEDMQQ 181
            K    + +  +  M +  +FK A    +V    NP  + ++P+ +    R  +  + + 
Sbjct: 120 VKAQGHNRMAQVVRMAIIDVFKEAQHAGHVPPGYNPAQATKQPRNRVTRQR-LSLNEWKT 178

Query: 182 FKSFWSEGSQ-PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL--- 237
             +   +     + A    L +G R  D        + +++  +  +KTG  + + L   
Sbjct: 179 IYAAAEQHPPYLQCAMLLALVTGQRIGDISNMKFSDIWDDMLHVTQEKTGCRLAIPLDLT 238

Query: 238 ----PDGFMKLLAMTPIG---------KETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284
                     ++A              + T        +++A   +  FK    + G+  
Sbjct: 239 CAAINMSLRDVVARCRDAVLSKYLVHFRHTTSQAVRGDRVSANAITTTFKKARERCGITW 298

Query: 285 ------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
                 + H  R  S  +  + G    +L    G K+    + Y
Sbjct: 299 PIGTAPTFHEQRSLSERLYREQGLDTQKL---LGHKSQKMTDKY 339


>gi|212716989|ref|ZP_03325117.1| hypothetical protein BIFCAT_01935 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660274|gb|EEB20849.1| hypothetical protein BIFCAT_01935 [Bifidobacterium catenulatum DSM
           16992]
          Length = 324

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/275 (12%), Positives = 88/275 (32%), Gaps = 29/275 (10%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HTPSSA 133
           +++ ++   G++   +   +      + +   +     +     +  +      H   + 
Sbjct: 32  AQWVRTYKEGAIRDVTMGKYRLTQSWLSKLIPELRLADMDRTAYQQLINGYAQHHERQTT 91

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSV--ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           + F   ++     AV + ++  +P   V  +  + + + ++   + ++    +    G +
Sbjct: 92  MDFHHQIKGAILDAVDEGFIPRDPTRKVIIKGKQPRIKKMKYLNQFELHAMLADLDLGDE 151

Query: 192 PRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSIKTQKT-------------------G 230
               +  LL   +GLR S++             ++   KT                    
Sbjct: 152 ASWDWLILLIAKTGLRFSEALGLTPDDFDFAHQTLSVSKTWDYKNGGGFVPTKNESSVRK 211

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVR 290
             +  +L      LL   P  K  F      +  N+T   +  +          S HG+R
Sbjct: 212 VQLDWQLIMQLSGLLKNLPHDKPIFV---HGKVYNSTANDVLARHCKNVDVPVISIHGLR 268

Query: 291 KFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
              A++   AG +   +    G  ++    ETY  
Sbjct: 269 HTHASLLLFAGVSIASVSRRLGHASMTTTQETYLH 303


>gi|13095863|ref|NP_076752.1| integrase [Lactococcus phage bIL310]
 gi|15672029|ref|NP_266203.1| integrase [Lactococcus lactis subsp. lactis Il1403]
 gi|12722887|gb|AAK04145.1|AE006243_9 prophage ps1 protein 23, integrase [Lactococcus lactis subsp.
           lactis Il1403]
 gi|12831052|gb|AAK08405.1|AF323671_1 integrase [Lactococcus phage bIL310]
          Length = 394

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 54/370 (14%), Positives = 114/370 (30%), Gaps = 59/370 (15%)

Query: 30  GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAV 89
           G+++R     +S  +     +   +  ++      +      K +   +  S     +  
Sbjct: 28  GKQVRKVITAKSEKMCNTKISRAINEFEKNGQTVRKVSVDDFKDIAMLWFDSYK-LGVKP 86

Query: 90  NSRISFESYFD-QIIRKSGDFDYRK---ITTKHIRSGVESRKHTP-SSAIQFLT------ 138
            +    ++  +  ++   G++   K   I  + I +        P + A           
Sbjct: 87  RTVQIMQTRLNNYVLPALGEYRIDKVNSIILQQIVNQWMINASQPLNGAYHRPKGKGKDF 146

Query: 139 -----SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP----WTKEDMQQFKSFWSEG 189
                 +  +FK A+    V  NPC++V  PK + E         T E ++ F  +    
Sbjct: 147 KIYFNIVERIFKHALSLGLVKDNPCVNVIVPKVRLESTEKKVKHLTAEQLKIFFEYIGAL 206

Query: 190 SQPRLAFEFL-------LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD--- 239
            + +   E +       + SGLR  ++       +     S+   KT     ++      
Sbjct: 207 PKEKYTNELMTGLCRLLVASGLRIGEAVALSWSDIDFKTGSVSVSKTTLRAVIQSTPKTD 266

Query: 240 -------------------GFMKLLAMTPIGK---ETFFINNDKQKMNATQFSIWFKAKA 277
                                 +      IGK   E  F N     ++      +     
Sbjct: 267 KSNRIVLIDSKAVEVLKHWELFQAKYFMSIGKGKQELVFPNRTGGVLDYQTMRPFLIKWL 326

Query: 278 TKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK-GADRIRLGIK 334
               + +   HG R   A++  +A     E+    G  ++    +TY+   +D     IK
Sbjct: 327 RACQLPQVGFHGFRHSHASLLLNADVPYKEIQERLGHASIKMTMDTYSHLESDNK---IK 383

Query: 335 NSRRISSVVD 344
              R  S+V+
Sbjct: 384 AVERFESIVN 393


>gi|115352072|ref|YP_773911.1| phage integrase family protein [Burkholderia ambifaria AMMD]
 gi|115282060|gb|ABI87577.1| phage integrase family protein [Burkholderia ambifaria AMMD]
          Length = 418

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 43/294 (14%), Positives = 97/294 (32%), Gaps = 31/294 (10%)

Query: 50  ALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGD 108
           A      KR    +      T +WL            +A ++R   +S  D+ I+    +
Sbjct: 83  AHEKQREKRRLTAAKNFGDMTARWLADA--------KMADSTRAMRKSIVDRDILPAFKN 134

Query: 109 FDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
               ++++  +R+     K    P++A+     ++ ++ +A+       NP   V     
Sbjct: 135 RLLNEVSSDDLRALCNKVKARGAPATAVHVRDIVKQVYAFAILHGEKVDNPADGVGAASI 194

Query: 167 KT--EGIRPWTKEDMQ-QFKSFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221
            T     R  +  +++  ++   S  + P  RLA   +L + +R S+   A    +    
Sbjct: 195 ATFVPKDRALSPMEIRLMYRQMESVATYPTIRLALRMILLTLVRKSELIEATWAEVDFEN 254

Query: 222 FSIK----TQKTGTIITVELPDGFMKL---LAMTPIGKETFFINNDK-----QKMNATQF 269
            +        K      V L    + +   L     G +    +         K    + 
Sbjct: 255 ATWTIPKSRMKGRNPHVVYLSRQAVDIFVALHTCAAGSKFVLPSRYDADRCMSKATLNRV 314

Query: 270 SIWFKAKATKAGVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
           +     +A  AG+     + H +R+  +T+  + G     +      +    + 
Sbjct: 315 TQIVSERAKAAGLPLEPFTVHDLRRTGSTLLNEVGFNGDWIEKCLAHEDGRSSR 368


>gi|294673638|ref|YP_003574254.1| prophage PRU01 site-specific recombinase [Prevotella ruminicola 23]
 gi|294472192|gb|ADE81581.1| prophage PRU01, site-specific recombinase, phage integrase family
           [Prevotella ruminicola 23]
          Length = 381

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 48/261 (18%), Positives = 90/261 (34%), Gaps = 26/261 (9%)

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS-----A 133
           RK     +LA NS    +     +           +T  ++R+  ++    P++      
Sbjct: 114 RKHMEQENLAQNSIKDIKVVLKSVEESGLLNTLADLTPANVRAY-DAWLRKPNTRTDYTI 172

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
             +   +R   K   +QE ++I+P   V+ PK   +   P T+ ++ + +     G + R
Sbjct: 173 NGYHKKVRKYTKILWQQEIISIDPYDHVKFPKGTNKERHPLTENEIIKIRDAEFYGRKDR 232

Query: 194 LA--FEFLLYSGLRCSDSCRAGVQ---HLQNNIFSI--KTQKTGTIITVELPDGFMKLLA 246
               F F+ Y+GL   D C    +    L ++ + I     KTG+     +    + +L 
Sbjct: 233 ARDLFVFMAYTGLAYCDMCLFNFKTMTELHDDYYYIDGARLKTGSNFFTPILPPALAVLE 292

Query: 247 MTPIGKETFFIN---NDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGAT 303
                K     N   ND   +      I  +               R   AT+    G  
Sbjct: 293 KY-DFKLPIISNQKLNDYLHLIQDTLDIRNEVTCHIG---------RHSFATLMLTYGIP 342

Query: 304 AHELMATYGWKTVDQAETYTK 324
             ++    G K +   + Y K
Sbjct: 343 IEKVKRMLGHKNIATTQIYAK 363


>gi|94991427|ref|YP_599527.1| DNA integration/recombination/inversion protein [Streptococcus
           pyogenes MGAS10270]
 gi|94544935|gb|ABF34983.1| DNA integration/recombination/inversion protein [Streptococcus
           pyogenes MGAS10270]
          Length = 421

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 52/354 (14%), Positives = 108/354 (30%), Gaps = 67/354 (18%)

Query: 56  PKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKI 114
            +  +         TL+ L   + +S      + N+      Y D  II K GD+   KI
Sbjct: 66  ERNGFTRKEVISIATLEDLAEAWFQSYQTWVSSHNTLNRVRGYLDNYIIPKFGDYKPDKI 125

Query: 115 TTKHIRSGVESRKHTPSS--------AIQ--------FLTSMRVLFKWAVRQEYVAINPC 158
            + +I+  +                 A +         +  ++ +F + +    +  NP 
Sbjct: 126 ESANIQLWLNDLAKKSKKSIESGVKRANKGSAKDFGAVIHKLKDIFDYGITNYGLTANPV 185

Query: 159 LSVE---RPKRKTEGIRPWTKEDMQQFKSFWS------EGSQPRLAFEFLLYSGLRCSDS 209
            +V+   +PK   + I     + +  + ++           + +L    LL S LR ++ 
Sbjct: 186 STVKVPPKPKSNKQRIMVLHDDSLAMWLNYLENLDNSRANRRFKLICNTLLASALRINEL 245

Query: 210 CRAGVQHLQNNIFSIKTQKT-----------------------------GTIITVELPDG 240
               +  L     SI   KT                                + + + + 
Sbjct: 246 LALTIDDLNFEESSISVNKTLLWKTANKKTGTKGEVVCKATPKTDAGNRSIPVPLSILEE 305

Query: 241 FMK--------LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRK 291
                      L        +  F       M         K +    G+ +   H  R 
Sbjct: 306 LQDFHNEMNKYLKLHNRPETKLIFPTIYGNYMCDRNERTTLKQRLAGLGLPDYGFHLFRH 365

Query: 292 FSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNS--RRISSV 342
             A++  +AG    EL    G K++    +TY + A + +L   +    +++ +
Sbjct: 366 THASMLLNAGTNWKELQVRMGHKSISTTMDTYAELAPQRKLEAVDIYLDKLAEL 419


>gi|293371770|ref|ZP_06618180.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|291516009|emb|CBK65219.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
 gi|292633222|gb|EFF51793.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
          Length = 411

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 47/293 (16%), Positives = 107/293 (36%), Gaps = 31/293 (10%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQ------IIRKSGDFDYRKITTK---HIRSGVESR 126
            +Y K    G  A  +   +   +        I     D   +++T          + + 
Sbjct: 118 EDYEKQVEAGMKAKGTLEKYRIVYKHLQEFLTIRYHVKDIALKELTPAFISDFEMFLRTD 177

Query: 127 KHTPSSAIQFLTS-MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           KH  ++ +      +R +   A+  E++  +P    E  K +T      TK++++     
Sbjct: 178 KHCCTNTVWLYVCPLRTMVFIAINNEWLTRDPFREYEIKKEETT-RSFLTKDEIRLLMEG 236

Query: 186 WSEGSQPRLAFEFLLY---SGLRCSDSCRAGVQHLQN-----NIFSIKTQKTGTIITVEL 237
             + ++  L  +  L+   +GL  +D      ++++         +I  QKTG +  + L
Sbjct: 237 KLKNAKQELYRDLYLFCAFTGLSFADMRNLTEENIRTYFDEHEWININRQKTGVVSNIRL 296

Query: 238 PDGFMKLL--AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFS 293
            D   +++       G    F                 +A A + G+ K  + H  R  +
Sbjct: 297 LDIANRIIGKYRGLCGDGRIFPVPH-----YNTCLAGIRAVAKRCGITKHITWHVARHTA 351

Query: 294 AT-ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345
           AT +    G     + +  G K++   + Y K   + +L  ++   +++ ++S
Sbjct: 352 ATTVFLSNGVPIETVSSMLGHKSIKTTQIYAK-ITKEKLN-QDMENLAARLNS 402


>gi|85059870|ref|YP_455572.1| phage integrase [Sodalis glossinidius str. 'morsitans']
 gi|84780390|dbj|BAE75167.1| phage integrase [Sodalis glossinidius str. 'morsitans']
          Length = 329

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 45/319 (14%), Positives = 99/319 (31%), Gaps = 28/319 (8%)

Query: 12  TKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
            + ++R G+     RK    ++             +   +  +   ++++  P      L
Sbjct: 15  VRPQSRQGR---RVRKKFKTKVE---------AQQFERWIIATQNNKDWVEKP-ADQRAL 61

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK---HIRSGVESRKH 128
             LI  + +     +L    +   +     +  K G+   R+IT       R    +   
Sbjct: 62  TELIELWFQHHG-QNLKDGLKTVHK--LRVMAAKMGNPKARQITKASFSDYRVLRLAEGK 118

Query: 129 TPSSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              +       +  +F   +    Y   +P   +++ K   + +   T+E++    +   
Sbjct: 119 KAKTINLDQEKLGAVFSVLIELGHYHGEHPLKEMKKIKLPVQEMGFLTREEINTLLARL- 177

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
           EG   + A +  L +G R  +  +   + +  N  +    K      V +       +  
Sbjct: 178 EGDNLKAA-KLCLATGARWGEVFKLRREEVIGNKVTYLNTKNNKNRAVFISTELCAQIRD 236

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHEL 307
           + I     F N     +N        K  A      ++ H +R   A+     G     L
Sbjct: 237 S-IQNGRLFAN-----LNYRYVRDCIKEIAPNLPAGQAVHVLRHTFASHFMMNGGNILAL 290

Query: 308 MATYGWKTVDQAETYTKGA 326
               G  ++ Q   Y   A
Sbjct: 291 QRILGHSSILQTMVYAHFA 309


>gi|53717721|ref|YP_106707.1| putative phage integrase [Burkholderia pseudomallei K96243]
 gi|167736507|ref|ZP_02409281.1| Integrase or site-specific recombinase [Burkholderia pseudomallei
           14]
 gi|167813584|ref|ZP_02445264.1| Integrase or site-specific recombinase [Burkholderia pseudomallei
           91]
 gi|167843731|ref|ZP_02469239.1| Integrase or site-specific recombinase [Burkholderia pseudomallei
           B7210]
 gi|254186627|ref|ZP_04893144.1| site-specific recombinase, phage integrase family [Burkholderia
           pseudomallei Pasteur 52237]
 gi|254260459|ref|ZP_04951513.1| site-specific recombinase, phage integrase family [Burkholderia
           pseudomallei 1710a]
 gi|52208135|emb|CAH34065.1| putative phage integrase [Burkholderia pseudomallei K96243]
 gi|157934312|gb|EDO89982.1| site-specific recombinase, phage integrase family [Burkholderia
           pseudomallei Pasteur 52237]
 gi|254219148|gb|EET08532.1| site-specific recombinase, phage integrase family [Burkholderia
           pseudomallei 1710a]
          Length = 409

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/301 (12%), Positives = 91/301 (30%), Gaps = 22/301 (7%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWL--ISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSG 107
           + G           R    +L  +   +EY         +     +     ++ I    G
Sbjct: 81  VAGGVSPVADARKDRGAVKSLDTIHEFAEYWIEQQMMGKSAEYLRTTRRALEKDIYPAIG 140

Query: 108 DFDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV--ER 163
                 +T   + +  +  K    P  A+     ++ ++++A+ ++ V  NP  ++    
Sbjct: 141 GKSVSDVTPGDVLAICDRIKKRGAPKMALSTRNILKRIYEYAIARQLVTSNPAQAIVARF 200

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQPR---LAFEFLLYSGLRCSDSCRAGVQHLQNN 220
              +    R  +  ++ +        S  R   LA   L+ + +R S+   A       +
Sbjct: 201 VATQASRDRVLSPNEIGRVLRAVYASSIRRPLKLAIHLLVLTMVRKSELIEARWDEFDLD 260

Query: 221 IFSIK----TQKTGTIITVELPDGFMKLLA---MTPIGKETFFINNDK--QKMNATQFSI 271
               +      K      V L    + +L     T    +  F ++    + +  +  + 
Sbjct: 261 ASIWRIPAERMKKDREHWVYLAPQAVAMLRELHATRTSHQYVFPSSRGADRPIAKSTLNQ 320

Query: 272 WFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG--ADRI 329
             +        +   H  R+ ++T   + G  +  +              Y +   AD  
Sbjct: 321 AVR-ALDMDVQHFVLHDFRRTASTHLHEMGQPSDAIEKALAHSIKGIKGVYNRAEYADER 379

Query: 330 R 330
           R
Sbjct: 380 R 380


>gi|331652974|ref|ZP_08353979.1| putative phage integrase [Escherichia coli M718]
 gi|331049072|gb|EGI21144.1| putative phage integrase [Escherichia coli M718]
          Length = 528

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 43/253 (16%), Positives = 87/253 (34%), Gaps = 45/253 (17%)

Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA-INPCLSVERPKRKTEGIRPWTKE 177
           +R  + + +  PS+  + LT  ++   + +    +   NP   ++  K      R +T E
Sbjct: 276 VRDAMLASEVRPSTINKLLTKAKMCLDYGLMNGQLEGRNPIERMKLTKDTDSKRRAFTDE 335

Query: 178 DMQQFK---------SFWSEGSQ--PRLAFEFL-LYSGLRCSDSCRAGVQHL---QNNI- 221
           ++++           +  +  +    R     + + +G R ++ C    + +    N + 
Sbjct: 336 ELERLLVRVESEYQFTRHTAHTTSEARRWASLVSVVTGARSAEVCHLTKRDVVTLDNGLV 395

Query: 222 -FSIKTQKTGTII-------TVELPDG--------FMKLLAMTPIGKETFFINNDKQKMN 265
              I     G  +        V L DG        F++ + M P     F        M 
Sbjct: 396 CIDINEDGDGKSVKNKHSVRLVPLTDGACGLDLKSFLEWVDMQPDEGPLF-------GMT 448

Query: 266 ATQFSIWFKAKATKAGV----NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-E 320
            + +S WF ++     +    N S H +R + AT   + G    +     G  +     +
Sbjct: 449 PSAYSSWFNSRVLTEALPDAENVSLHSLRHWLATRMKERGVNLVDAQGILGHSSQSITYD 508

Query: 321 TYTKGADRIRLGI 333
            Y KG    RL  
Sbjct: 509 LYGKGHAVGRLAE 521


>gi|299139773|ref|ZP_07032945.1| integrase family protein [Acidobacterium sp. MP5ACTX8]
 gi|298598127|gb|EFI54293.1| integrase family protein [Acidobacterium sp. MP5ACTX8]
          Length = 366

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 53/295 (17%), Positives = 102/295 (34%), Gaps = 32/295 (10%)

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT--- 116
           YI        T+   ++ Y       S   +S++S       + +  G +    +T    
Sbjct: 50  YIQRAGADRLTVADALTRYLAEIT-PSKRPSSQVSDRQRSAILTKHLGKYSLAAVTPEVA 108

Query: 117 ---KHIRSGVESRKHT-----PSSAIQF---LTSMRVLFKWAVRQEY---VAINPCLSVE 162
              + +R   E RK       P S       L  +  LF  A++ E+   +  NP +++ 
Sbjct: 109 AKFRDVRLAGEDRKDDIGGPVPRSNDTVRLDLALLGHLFTIAIK-EWGIGLPANPVMNIR 167

Query: 163 RPKRKTEGIRPWTKEDMQQFKSFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQNN 220
           RP       R  +  +  +     +  S P  R      L +G+R S+        +  +
Sbjct: 168 RPTPAPGRNRRLSAGEEAKLLKAVALHSNPMLRWIVSIALETGMRSSEITGLRRMQVDLD 227

Query: 221 IFSIK--TQKTGTIITVELPDGFMKLLAMT------PIGKETFFINN---DKQKMNATQF 269
              ++    K  T  TV L    +++          PI  +  F      D ++      
Sbjct: 228 RRIVRLLETKNTTPRTVPLSKDAVEIFREAITHPVRPIDTDLIFFGEPGRDGKRRPYNFN 287

Query: 270 SIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            +W   K  +   +   H +R  + +   +AG +  E+ A  G K++   + YT 
Sbjct: 288 PVWLNIKREQGLADVRFHDMRHEAVSRFVEAGFSDQEVSAISGHKSMQMLKRYTH 342


>gi|170767184|ref|ZP_02901637.1| phage integrase [Escherichia albertii TW07627]
 gi|170123518|gb|EDS92449.1| phage integrase [Escherichia albertii TW07627]
          Length = 420

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 56/356 (15%), Positives = 112/356 (31%), Gaps = 51/356 (14%)

Query: 13  KERTRHGKIIYYFRKGHGRRIRLPYPHESTF-------IPAYMSAL-------TGSTPKR 58
           ++  +     + ++ G   R+ L   + + F       +   ++A         G   KR
Sbjct: 33  RKSDKFPNWRFRYKLGGKSRVVLIGSY-TDFSLAKAREVARELAARVSLGYDVAGEKQKR 91

Query: 59  EYINSPRKKPTT----LKWLISEYRKSAHWGSLAVNSRIS---FESYFDQIIRKSGDFDY 111
           +     + +       +  L  EY        +    +       S    I+   G    
Sbjct: 92  KAEALEKIEAQKNAKRVSDLAVEYYS----RQIEPTYKHPELFRSSLQKNIVASIGKMKI 147

Query: 112 RKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
             +  KHI   ++    + +P+ A   L  ++ LF +AV +  + +NP +S        +
Sbjct: 148 EDVRPKHIDYVLQDVLERGSPTVANDVLRMLKRLFDYAVVRGMIEVNPAISFSSKDAGGK 207

Query: 170 G---IRPWTKEDMQQFKSFWSEG----SQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNN 220
                R  T+E++  F     +G     +  L F+ +L  G+R  + C A     +L   
Sbjct: 208 EQGRKRALTREELVMFFKALRKGRGISRENELTFKIILALGVRKMELCAAEWSEFNLDEK 267

Query: 221 IFSIK--TQKTGTIITVELPDGFMKLLA--MTPIGKETFFINNDKQKMNAT--------Q 268
           ++       K G  I + L D  ++ +       G   + I   + +  +          
Sbjct: 268 VWHFPADRAKNGEEIDIPLADPVIEWIKEIRLFAGNSRWLIPARRGRTTSHVSRSTLNMV 327

Query: 269 FSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
                K          S H +R+   T  A  G            K       Y +
Sbjct: 328 LPSVLKEMPDVE--PFSIHDLRRTMRTQMAALGIDPVIAERCLNHKIPGVEGIYNR 381


>gi|120406876|ref|YP_956705.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
 gi|119959694|gb|ABM16699.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
          Length = 329

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/276 (13%), Positives = 82/276 (29%), Gaps = 38/276 (13%)

Query: 85  GSLAVNSRISFESYFDQII----RKSGDFD----YRKITTKHIRSGVESRKH----TPSS 132
             ++  +  S+      +I     ++G       +  +    I S ++  +H    +  +
Sbjct: 20  RQVSPRTIASYRDSLRLLIGFAQERTGKTPSRLEWTDLDADLIASFLDHLEHVRHNSART 79

Query: 133 AIQFLTSMRVLFKWAVRQ-----EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
               LT++R LF +A  +     E +     L++   +   + I   T  +++       
Sbjct: 80  RNLRLTAIRSLFGFAALRHPEHAEVIQQ--VLAIPAKRFDKQLITFLTATEIEALIDAPD 137

Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTG-TIITVELPDGF 241
               EG + R        +GLR ++        +   +  SI+    G     V L    
Sbjct: 138 TDRWEGRRDRALLLLASQTGLRVAEMTGLNCSDITFGDGSSIRCMGKGRKRRAVPLTTTT 197

Query: 242 MKLLA-----MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--------SAHG 288
             +L         +  +  F     ++++        +  A  A              H 
Sbjct: 198 QAVLRVWLTERGDVPDQPLFPTRTGRRLSTDTVERLVRLHAATAARTCPTIRPAELHPHV 257

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +R   A     AG     +    G   +     Y  
Sbjct: 258 LRHTCAMSLLHAGIDTAVIALWLGHADIRSTGIYLH 293


>gi|41057380|ref|NP_958084.1| gp27 [Enterobacteria phage PsP3]
 gi|37548586|gb|AAN08390.1| gp27 [Enterobacteria phage PsP3]
          Length = 349

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 46/322 (14%), Positives = 86/322 (26%), Gaps = 39/322 (12%)

Query: 26  RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG 85
           R+G   R       E+     Y    +G  P        R+    L  +I  +    +  
Sbjct: 20  REGRRIRRHFNTKGEAEAFELYTKNESGDKPWLGKKEDRRR----LSEIIQLWH---NLH 72

Query: 86  SLAVNSRISFESYFDQIIRKSGD--------FDYRKITTKHIRSGVE--------SRKHT 129
             A+ +  S  +    +    GD         D+     K +R  ++             
Sbjct: 73  GQALVASKSRLAKLQIVCNGLGDPIASRLTAKDWAHYRDKRLRGEIDNGYHKNPEKWIAK 132

Query: 130 PSSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           P +  +    +  +F    R   +   NP   +   K   + +   T E + Q      +
Sbjct: 133 PITVNREQQYLEAVFNELKRLGEWSLPNPLDGIRVFKEAEKEMSWLTLEQIPQLLLACHQ 192

Query: 189 GSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
                L    E  L +G R S++ R     L     +    K     TV +     + L+
Sbjct: 193 YGHEDLTQIVEICLATGARWSEAERLTRPQLSPYKLTFTKTKGKKNRTVPITKWLYEKLS 252

Query: 247 MTPIGKETFFINNDKQKM--NATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATA 304
                          +       +F         +    +  H +R          G   
Sbjct: 253 -----------TRQGRMFKPCYQEFKKMLLLTDIELTEGQKTHVLRHTFGAHFMMNGGNI 301

Query: 305 HELMATYGWKTVDQAETYTKGA 326
             L    G   + +   Y+  A
Sbjct: 302 LVLQKILGHANIRETMKYSHFA 323


>gi|28379726|ref|NP_786618.1| prophage Lp4 protein 1, integrase [Lactobacillus plantarum WCFS1]
 gi|28272567|emb|CAD65493.1| prophage Lp4 protein 1, integrase [Lactobacillus plantarum WCFS1]
          Length = 388

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 51/303 (16%), Positives = 102/303 (33%), Gaps = 42/303 (13%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR-K 127
           T   L +++    +   +  ++ +  +  F   I+ + G    ++IT    +S V     
Sbjct: 72  TFAELYTKWFNEDYKEQVKESTYMITDDIFRLHILPELGSQRVKRITVAQCQSIVHKWLN 131

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP----WTKEDMQQFK 183
               +  +F T    +F + VR E    NP      PK+KT+   P    + K ++  F 
Sbjct: 132 QGFKTYRRFRTYAISVFDFGVRMELTTRNPMAKTSIPKQKTKPQAPHVDFYEKSELLHFL 191

Query: 184 SFWSEGSQPRLA--FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI--------- 232
              S+   P+    F  L ++GLR  ++       +      +   KT  +         
Sbjct: 192 DCASKHENPQAFMFFRLLAFTGLRRGEALALQWSDINFETNELTVNKTQAVGKRWRTIIQ 251

Query: 233 --------ITVELPDGFMKLLAMTPI---------------GKETFFINNDKQKMNATQF 269
                    T+ L     + L    +                 +  F N   + M+ +  
Sbjct: 252 TPKTNTSYRTIVLDPDTAQWLHKWKMTQARQCFELGFNANDPSQLVFTNQQNKLMSPSTV 311

Query: 270 SIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGAD 327
           + +  +   K G+     H  R    T++ +A A  +E+  T G   +   E  Y     
Sbjct: 312 NYFNWSICKKYGLRHIKIHAFRHTFCTLAFEAHAGINEVSKTLGHADLKITEQIYLHVTK 371

Query: 328 RIR 330
           + +
Sbjct: 372 KQK 374


>gi|327314345|ref|YP_004329782.1| site-specific recombinase, phage integrase family [Prevotella
           denticola F0289]
 gi|326946202|gb|AEA22087.1| site-specific recombinase, phage integrase family [Prevotella
           denticola F0289]
          Length = 408

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 45/257 (17%), Positives = 86/257 (33%), Gaps = 29/257 (11%)

Query: 94  SFESYF-DQIIRKSG--DFDYRKITTKHIRSGVESRKHTPSSAIQF----LTSMRVLFKW 146
               +F + +I K G  D    + T   ++            A       + +++ +  +
Sbjct: 138 VLRRHFSEFLIHKYGRKDIGLTEFTPSVVQDFELYLSTVAGCAYNTSVKKMKALKTVTIY 197

Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ---PRLAFEFLLYSG 203
           A ++ Y+  +P L+  R   +       T E++ +  +      +    R  F F  ++G
Sbjct: 198 AQKRGYLLHDPFLN-HRFHLEPVNRGFLTDEEIMKIANKDFGIQRLELVRDVFIFSCFTG 256

Query: 204 LRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDGFMKLLAMTP-----IGKET 254
           L   D       ++           K QKT     V L D   +++A         GK  
Sbjct: 257 LAYIDVSNLTPDNIVTLDDKQWIMTKRQKTSVETNVLLLDIPKRIIAKYSGKTYRDGKLF 316

Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYG 312
             + N K        + + K  A   GV K  + H  R   AT+S   G     +    G
Sbjct: 317 PILTNQKT-------NAYLKEIADLCGVKKNLTFHLARHTFATMSLSKGVPMESVSKMLG 369

Query: 313 WKTVDQAETYTKGADRI 329
              +   + Y +  ++ 
Sbjct: 370 HTNIKTTQIYARITNKK 386


>gi|315172125|gb|EFU16142.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX1342]
          Length = 383

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 48/296 (16%), Positives = 98/296 (33%), Gaps = 43/296 (14%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
            +     YRK    G L+ ++        D   +   D   +++T +  +  +     T 
Sbjct: 73  FRNWFEVYRK----GKLSQDNDGDIRRAVDFSEKYFPDTKLKELTRQEYQKALNDYGETH 128

Query: 131 SSA--IQFLTSMRVLFKWAVRQEYVAINPC---LSVERPKRKTEGIRPWTKEDMQQFKSF 185
           ++A   +  T MR   K A+ +  +  +P     ++ +   K E ++    ++       
Sbjct: 129 ATASVKKHHTYMRAALKDALEEGIIHRDPTYRVQAIGKKNPKHEELKYLNYQESIHLVHE 188

Query: 186 WSEGSQP----RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG----------- 230
             EG +P    R    F + +G R S+        +     ++K  KT            
Sbjct: 189 ILEGIKPTYTSRFIILFGIATGCRFSEIIGMTWDCIDFKNKTVKVNKTWDYKYTNTFSNT 248

Query: 231 ----TIITVELPDGFMKLLAMTP-------------IGKETFFINNDKQKMNATQFSIWF 273
               +   + + D  + LL                       F+N++ + ++ T  +   
Sbjct: 249 KNYQSKRIITIDDDTLDLLKKLQLHQKEYYLKSGLRNENNLVFLNDNMELVSNTAVNKVL 308

Query: 274 KAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGAD 327
           +    K G    + HG+R   A+I    G     +    G K +    +TY    D
Sbjct: 309 RKFCRKIGTKELTCHGLRHTHASIMLYKGINIKYVSRRLGHKDIVTTLQTYQHILD 364


>gi|303243200|ref|ZP_07329628.1| integrase family protein [Acetivibrio cellulolyticus CD2]
 gi|302589255|gb|EFL59075.1| integrase family protein [Acetivibrio cellulolyticus CD2]
          Length = 337

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 50/308 (16%), Positives = 95/308 (30%), Gaps = 44/308 (14%)

Query: 71  LKWLISEYRK--SAHWGSLAVNSRISFESYF-------DQIIRKSGDFDYRKITTKHIRS 121
            + L+S Y         S + N+  S+   F       + + +         +  K+I  
Sbjct: 6   FQQLLSSYFLKYIPERTSYSNNTIKSYRDTFILLFQYHEYLHKSLSKISLETMNCKYIED 65

Query: 122 GVE----SRKHTPSSAIQFLTSMRVLFKWAVRQ--EYVAINPCLSVERPKRKTEGIRPWT 175
            +      + ++ SS  Q L ++   FK+  ++  EY+ I  C SV R K +   + P  
Sbjct: 66  FLVWLECEKHYSVSSVNQRLAAVHAFFKFVQKENPEYIEI--CTSVLRIKSQKVPVMPMN 123

Query: 176 KEDMQQFKSFWS-------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN---NIFSIK 225
              ++  K   S       EG +       L  SG R  +        ++N       + 
Sbjct: 124 YFSVEAIKLLLSLPDTSKLEGRRELAILTLLYDSGARVQEIADLTFGDVRNVKPATVRLT 183

Query: 226 TQKTGTIITVELPDGFMKL--------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKA 277
            +   T +   +P     +             +     F N   +K+     +       
Sbjct: 184 GKGNKTRVVPIMPQSLSVINSYMDDCKKKTVILSTYPLFFNKKGEKLTRAGIAYILDKYV 243

Query: 278 TKA-GV-------NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADR 328
             A  +         S H +R   +    + G     +    G  +V   E Y K   + 
Sbjct: 244 DLARSIRQDLFPNKVSPHTMRHSKSMHLLEGGVNLIYIRDFLGHASVVTTEIYAKSNPEI 303

Query: 329 IRLGIKNS 336
            R  I+  
Sbjct: 304 KRKAIEAV 311


>gi|227878766|ref|ZP_03996677.1| integrase XerC family protein [Lactobacillus crispatus JV-V01]
 gi|262046797|ref|ZP_06019757.1| integrase [Lactobacillus crispatus MV-3A-US]
 gi|227861659|gb|EEJ69267.1| integrase XerC family protein [Lactobacillus crispatus JV-V01]
 gi|260572779|gb|EEX29339.1| integrase [Lactobacillus crispatus MV-3A-US]
          Length = 407

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 49/322 (15%), Positives = 114/322 (35%), Gaps = 51/322 (15%)

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG-DFDYRKITTKHIRSG 122
             +   T   L  +Y + A    LA N+    ++  ++I  + G D   + +T + I   
Sbjct: 60  SGETDITFAELKDKYLEIAQ-KQLAYNTYYRKKTTLNKISSEWGKDTIAKNVTPQFINKY 118

Query: 123 VESR--KHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE-------RPKRKTEG 170
           +++      P   ++   + + + V+++  ++  Y++ NP   V+         KR+   
Sbjct: 119 LDNMLYGEHPYANATVNSYKSCIGVVYEMGIKYGYISNNPIDKVKISWKSESLKKREEIE 178

Query: 171 IRPWTKEDMQQFKSFWSEGSQPRLA--FEFLLYSGLRCSDSCRAGVQHL----------- 217
            +     ++++      E  +P L   FE++  +G+RC ++     +++           
Sbjct: 179 NKYLDDNELERILKDCDERKRPDLKEFFEWMYLTGMRCGEAAAIQKKNILQDKDGTWFAR 238

Query: 218 -QNNIFSIKTQ--------KTGTI------ITVELPDGF---MKLLAMTPIGKETFFINN 259
            + ++ +I+ +        KT           V LP       K         +  F NN
Sbjct: 239 VRGSLITIRNEPDPSKRHIKTKNAKTYAGDRDVTLPPEAITIAKNHCEDKKANDFIFTNN 298

Query: 260 DKQK---MNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWK 314
            K      N ++ +   K+   +  + K    H  R    +  A+ G   + +    G  
Sbjct: 299 WKTSEGYFNNSKLNKVLKSIMKRQKIKKKLVTHIFRHTHVSKLAEMGVPLYVIQQRVGHG 358

Query: 315 TVD-QAETYTKGADRIRLGIKN 335
                   Y     +++  + N
Sbjct: 359 DSRITRRIYLHITKKVKKDLAN 380


>gi|134281622|ref|ZP_01768330.1| site-specific recombinase, phage integrase family [Burkholderia
           pseudomallei 305]
 gi|134247289|gb|EBA47375.1| site-specific recombinase, phage integrase family [Burkholderia
           pseudomallei 305]
          Length = 414

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/301 (12%), Positives = 91/301 (30%), Gaps = 22/301 (7%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWL--ISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSG 107
           + G           R    +L  +   +EY         +     +     ++ I    G
Sbjct: 86  VAGGVSPVADARKDRGAVKSLDTIHEFAEYWIEQQMMGKSAEYLRTTRRALEKDIYPAIG 145

Query: 108 DFDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV--ER 163
                 +T   + +  +  K    P  A+     ++ ++++A+ ++ V  NP  ++    
Sbjct: 146 GKSVSDVTPGDVLAICDRIKKRGAPKMALSTRNILKRIYEYAIARQLVMSNPAQAIVARF 205

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQPR---LAFEFLLYSGLRCSDSCRAGVQHLQNN 220
              +    R  +  ++ +        S  R   LA   L+ + +R S+   A       +
Sbjct: 206 VATQASRDRVLSPNEIGRVLRAVYASSIRRPLKLAIHLLVLTMVRKSELIEARWDEFDLD 265

Query: 221 IFSIK----TQKTGTIITVELPDGFMKLLA---MTPIGKETFFINNDK--QKMNATQFSI 271
               +      K      V L    + +L     T    +  F ++    + +  +  + 
Sbjct: 266 ASIWRIPAERMKKDREHWVYLAPQAVAMLRELHATRTSHQYVFPSSRGADRPIAKSTLNQ 325

Query: 272 WFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG--ADRI 329
             +        +   H  R+ ++T   + G  +  +              Y +   AD  
Sbjct: 326 AVR-ALDMDVQHFVLHDFRRTASTHLHEMGQPSDAIEKALAHSIKGIKGVYNRAEYADER 384

Query: 330 R 330
           R
Sbjct: 385 R 385


>gi|125719073|ref|YP_001036206.1| phage integrase family integrase/recombinase [Streptococcus
           sanguinis SK36]
 gi|125498990|gb|ABN45656.1| Integrase/recombinase, phage integrase family, putative
           [Streptococcus sanguinis SK36]
          Length = 421

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 64/364 (17%), Positives = 115/364 (31%), Gaps = 70/364 (19%)

Query: 49  SALTGSTPKREYINSPRKK---PTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIR 104
            A+  +  + E   S R+K     TL+ L  E+ KS      + N+      Y D  II 
Sbjct: 56  RAIIRARLEFEKNGSTREKVIVIDTLEDLAEEWFKSYKTWVNSHNTLNRVRGYLDNYIIP 115

Query: 105 KSGDFDYRKITTKHIRSGVE--------------SRKHTPSSAI--QFLTSMRVLFKWAV 148
           K GD+   KI +  I+  +                R    S+      +  ++ +F + +
Sbjct: 116 KFGDYKPDKIESADIQLWLNGLAKKSKESIESGIKRADKGSAKDFGAVIHKLKDIFDYGI 175

Query: 149 RQEYVAINPCLSVE---RPKRKTEGIRPWTKEDMQQFKSFWS------EGSQPRLAFEFL 199
               +  NP  SV+   +PK   + I     + +  + ++           + +L    L
Sbjct: 176 TNYGLITNPVSSVKIPPKPKSNKQRIMVLHDDSLVIWLNYLESLDNNRANRRFKLICNTL 235

Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-----------------------------G 230
           L S LR ++     +  L     SI   KT                              
Sbjct: 236 LASALRINELLALTIDDLDFENSSINVSKTLMWKTANKKDGTKGEVICKATPKTDAGNRS 295

Query: 231 TIITVELPDGFMK------LLAMTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGV 282
             + + + +          L         T   F       M         K +    G+
Sbjct: 296 VPVPLPIIEKLRDFHHEMNLYLELHNRHRTKLIFPTIYGNYMCDRNERTTLKKRLVGLGL 355

Query: 283 -NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNS--RR 338
            N   H  R   A++  +AG    EL    G K++    +TY + A + +L        +
Sbjct: 356 PNYGFHLFRHTHASMLLNAGTNWKELQVRMGHKSISTTMDTYAELAPQRKLEAVGIYLEK 415

Query: 339 ISSV 342
           I+ +
Sbjct: 416 IAEL 419


>gi|323128246|gb|ADX25543.1| DNA integration/recombination/inversion protein [Streptococcus
           dysgalactiae subsp. equisimilis ATCC 12394]
          Length = 421

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 52/354 (14%), Positives = 108/354 (30%), Gaps = 67/354 (18%)

Query: 56  PKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKI 114
            +  +         TL+ L   + +S      + N+      Y D  II K GD+   KI
Sbjct: 66  ERNGFTRKEVISIATLEDLAEAWFQSYQTWVSSHNTLNRVRGYLDNYIIPKFGDYKPDKI 125

Query: 115 TTKHIRSGVESRKHTPSS--------AIQ--------FLTSMRVLFKWAVRQEYVAINPC 158
            + +I+  +                 A +         +  ++ +F + +    +  NP 
Sbjct: 126 ESANIQLWLNDLAKKSKKSVESGVKRANKGSAKDFGAVIHKLKDIFDYGITNYGLTANPV 185

Query: 159 LSVE---RPKRKTEGIRPWTKEDMQQFKSFWS------EGSQPRLAFEFLLYSGLRCSDS 209
            +V+   +PK   + I     + +  + ++           + +L    LL S LR ++ 
Sbjct: 186 STVKVPPKPKSNKQHIMVLHDDSLAMWLNYLENLDNSRANRRFKLICNTLLASALRINEL 245

Query: 210 CRAGVQHLQNNIFSIKTQKT-----------------------------GTIITVELPDG 240
               +  L     SI   KT                                + + + + 
Sbjct: 246 LALTIDDLNFEESSISVNKTLLWKTANKKTGTKGEVVCKATPKTDAGNRSIPVPLSILEE 305

Query: 241 FMK--------LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRK 291
                      L        +  F       M         K +    G+ +   H  R 
Sbjct: 306 LQDFHNEMNKYLKLHNRPETKLIFPTIYGNYMCDRNERTTLKKRLAGLGLPDYGFHLFRH 365

Query: 292 FSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNS--RRISSV 342
             A++  +AG    EL    G K++    +TY + A + +L   +    +++ +
Sbjct: 366 THASMLLNAGTNWKELQVRMGHKSISTTMDTYAELAPQRKLEAVDIYLDKLAEL 419


>gi|319935664|ref|ZP_08010095.1| hypothetical protein HMPREF9488_00926 [Coprobacillus sp. 29_1]
 gi|319809322|gb|EFW05757.1| hypothetical protein HMPREF9488_00926 [Coprobacillus sp. 29_1]
          Length = 356

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 51/298 (17%), Positives = 97/298 (32%), Gaps = 36/298 (12%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFE-SYFDQIIRKSGDFDYRKITTKHIRSGVESR--- 126
            K L   Y +S     L   +  S E  Y +++  + G+ D   IT   +R   +     
Sbjct: 3   FKELYCVYIESVQ-LELKRTTIDSIEYRYKNRLDERFGNLDIESITIDMVREYQKEMLYQ 61

Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
              +     + +  MR +    V +  V  N  + +++ K +    +     D+  F++F
Sbjct: 62  DNLSAEYINRIIGIMRQILDCGVTRNLVKENVLVKIKKVKDQYRIDKKQVIWDLDVFRTF 121

Query: 186 WS--EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----------------NNIFSIKTQ 227
            S       +L F  L + GLR  +       ++                      + T 
Sbjct: 122 DSYIADDMDKLLFNMLYFLGLRKGELLSLKWSNINFEKKIVNVISTAVQIVGKGQIVTTP 181

Query: 228 KTGTIIT-VELPDGFMKLL-------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATK 279
           KT   I  + + D   ++L        +        +I    + ++ +            
Sbjct: 182 KTNHSIRGICMNDTLFEMLSNYYFKMKLQYDVVNHLYIFGSNKMISFSALDRKLAKYLKL 241

Query: 280 AGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGAD--RIRLGI 333
           +GV K + HG R   AT+ A        +    G ++VD     Y    D  +  L  
Sbjct: 242 SGVEKINLHGFRHSHATMLASLTTDIKSISDRLGHESVDVTLNEYIHSNDFAQKELAD 299


>gi|301630209|ref|XP_002944215.1| PREDICTED: putative prophage CPZ-55 integrase-like [Xenopus
           (Silurana) tropicalis]
          Length = 465

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 60/394 (15%), Positives = 128/394 (32%), Gaps = 60/394 (15%)

Query: 10  FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIP---------AY---------MSAL 51
           +VT  RT +    Y +R    R   +   ++ T             Y            L
Sbjct: 48  YVTVLRTGNISFRYDYRLNGRRETLVIGQYDPTLAARKPREVATLEYGMLLSLAEARLLL 107

Query: 52  TGSTPKREYINSPRKKP----------TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ 101
             +    E  +SP +             T      +Y   A    LA ++R   ++ +D+
Sbjct: 108 ANARRTIEQGDSPSRAKVEKRVEANEGMTFGGWAEKYFAEAK---LAESTRAMRKAVYDR 164

Query: 102 -IIRKSGDFDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPC 158
            +  + G     +IT   + +  E  K    P+ A+Q    +  +F++   +     NP 
Sbjct: 165 NLATEFGRLKLEEITPSRLMARCEKIKERGAPAPAVQSRDIVLQIFRFVQARGLRIENPA 224

Query: 159 LSVERPKRK--TEGIRPWTKEDMQQFKSFWSE---GSQPRLAFEFLLYSGLRCSDSCRAG 213
            ++            R  + E++ ++ +   E    +  RLA +F+L + +R S+  +A 
Sbjct: 225 EAIRPSAIAAFKVRDRALSPEEIHKYFNALEEVSSAATLRLAVKFMLLTMVRKSEFTQAK 284

Query: 214 VQHLQNNIFSIK----TQKTGTIITVELPDGFMKLLAMTPI--GKETFFINNDKQKMNAT 267
            + +              K      V L    + +L       G   +   +  +  +  
Sbjct: 285 WEEVNFETGVWTIPKERMKASRPHNVYLSQQAIDILVAFKTCYGASPYL--HPGRYESDF 342

Query: 268 QFSIWFKAKATKAGV-----------NKSAHGVRKFSATISADAGATAHELMATYGWKTV 316
             S     +   AG              + H +R+ ++T+  +AG  +  +      +  
Sbjct: 343 PMSNGTLNRLVVAGTEVIVARGEEFEPFTVHDLRRTASTLLHEAGFNSDWIEKCLAHEQR 402

Query: 317 DQAETYTKG--ADRIRLGIKNSRRISSVVDSDDP 348
                Y K   A++ R  ++    +      + P
Sbjct: 403 GVRAVYNKAEYAEQRRAMLQAWADMVDTWIVNGP 436


>gi|186473704|ref|YP_001861046.1| integrase family protein [Burkholderia phymatum STM815]
 gi|184196036|gb|ACC74000.1| integrase family protein [Burkholderia phymatum STM815]
          Length = 336

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 44/325 (13%), Positives = 93/325 (28%), Gaps = 49/325 (15%)

Query: 67  KPTTLKWLISEYR--KSAHWGSLAVNSRISFESYFDQIIRKS--------GDFDYRKITT 116
           +P     L+  +   +     + +  +  S+   F  ++  +          F   ++  
Sbjct: 7   QPQEFASLLQRFFIERLMQQQNASARTVESYRDTFRMLLTYAQRVLHKPPEKFTLDELDV 66

Query: 117 KHIRSGVE----SRKHTPSSAIQFLTSMRVLFKWAVRQ--------EYVAINPCLSVERP 164
             I + ++    +R ++  S    L+++R  + +   +        + +   P    ERP
Sbjct: 67  TLITAFLDHLETARSNSIRSRNARLSAIRTFYHYVTMRCPQALHLAQQILSIPTKRFERP 126

Query: 165 KRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220
                     ++E++             G + RL    L  +G R S+     V  +   
Sbjct: 127 LLG-----FLSREEVHALLGAPDPDTWFGQRDRLLLMLLYNTGARVSELTGMRVADVTLA 181

Query: 221 IFSIKT--QKTGTIITVELPDGFMKLLAMTPIGK-----ETFFINNDKQKMNATQFSIWF 273
                    K      V L       +      +     ++   +     M     +  F
Sbjct: 182 ATPWVRLHGKGRKQRAVPLWRETAAAIRTWIRDQGLQPEQSLLPSRHGGPMTRANVAERF 241

Query: 274 KAKATKAGVNK--------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
                 A            + H +R   AT    AG    E+    G ++      Y   
Sbjct: 242 SLALMAAAKTCPSLLKRHITPHSMRHTVATHLLQAGVGITEVALWLGHESPLTTHGYV-E 300

Query: 326 ADR--IRLGIKNSRRISSVVDSDDP 348
           AD+   R  +   +     V S  P
Sbjct: 301 ADQAMKRRVLAKVKAPGVKVTSYRP 325


>gi|296394735|ref|YP_003659619.1| integrase family protein [Segniliparus rotundus DSM 44985]
 gi|296181882|gb|ADG98788.1| integrase family protein [Segniliparus rotundus DSM 44985]
          Length = 387

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 44/300 (14%), Positives = 86/300 (28%), Gaps = 60/300 (20%)

Query: 82  AHWGSL---AVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH--------- 128
             W +L   +  ++     Y +  ++    D+    I    ++  V              
Sbjct: 68  PEWQALRTVSEGTKRRKACYLNLHVMPYWRDWWIEDIKRSDVQRWVNQLGEPVVEELPGG 127

Query: 129 --------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                    P+S  Q L+ +    + AV +E +  NPC  V RP+      R   + +  
Sbjct: 128 KLRTVRDLAPASVYQCLSMLSGYLEAAVVKEVIGANPCRGVARPRPTPAPNRYLERFEFD 187

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ-------------HLQNNIFSIKTQ 227
             + F        L  +FL  +G+R  ++    ++             +  +    +KT 
Sbjct: 188 GIQRFHKLAQDGFLC-DFLHETGMRLGEAYGFHIESYNPHLMIVEVERNWDSEALVMKTP 246

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKET------------------FFINNDKQKMNAT-Q 268
           K      V +       +      +                         D +      +
Sbjct: 247 KDHQRRAVPVSRRLAARIDAHIAERGLGKPPQVRYEKGLRKPTTGLLFTEDGRGPVDDHR 306

Query: 269 FSIWFKAKA---TKAGV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           F   F+A      +AGV   +   H +R   A+     G     +    G  +    E Y
Sbjct: 307 FENRFQAACAHARRAGVLIGHVRRHDLRHTCASRLLRKGVPLSVVQEILGHASSKTTEIY 366


>gi|269128731|ref|YP_003302101.1| integrase family protein [Thermomonospora curvata DSM 43183]
 gi|268313689|gb|ACZ00064.1| integrase family protein [Thermomonospora curvata DSM 43183]
          Length = 409

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 53/393 (13%), Positives = 100/393 (25%), Gaps = 63/393 (16%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYP---HESTFIPAYMSALTGSTPKREY 60
           S +  P +     + G    Y  +       +  P             +A   +  K   
Sbjct: 11  SRKARPRLRDGVMKRGSTWSYVIRVRDPETGVSKPKWVGGFVTEEEAKAARDEARVKARR 70

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHI 119
                +   T+   + E+ + AH   +   +   + +     I    GD   + +    I
Sbjct: 71  GEYIDRTTITVAQYLDEWLE-AHAVEIKPRTLAGYHTMVRLYIKPHIGDLRLQAVRPAQI 129

Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQ----------EYVAINPCLSVERPK-RKT 168
                    +     + L+   V+   A+            E +  NP    +RPK    
Sbjct: 130 TKLYRDLLASGGEGGKPLSVSTVMRVHAILHKAFADAVLVDELIPSNPAERAKRPKGLVR 189

Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--- 225
           E    WT   ++ F     E  +    +    Y+G R  +       ++  +   I    
Sbjct: 190 EADGIWTPAQLRVFLQAVREH-RLFAFYHLAAYTGARRGELLALRWSNVDLDGKRITIGG 248

Query: 226 ------------TQKTGTIITVELPDGFMKLLAM----------------TPIGKETFFI 257
                       T K+G    V + D  + +L                          F 
Sbjct: 249 SAGVVKGRRIEGTTKSGRSRVVTIDDETVAVLREHRKAQLAEQFQAGEAWRGAEDGYVFT 308

Query: 258 NNDKQKMNATQFSIWFKAKATKA-------------GVNKSAHGVRKFSATISADAGATA 304
               + ++      W   K  +A               +   H +R   AT    AG   
Sbjct: 309 TERGEPIHPDSVG-WLMTKTIRAYNNPPQGPKPAEPLPHARVHDLRHIHATTLLLAGVPV 367

Query: 305 HELMATYGWKTVDQA-ETYTKGADRIRLGIKNS 336
           H + A  G          Y        +   + 
Sbjct: 368 HVVAARLGHADPAITLRVYAHVIRSAEVAAADV 400


>gi|218296123|ref|ZP_03496892.1| integrase family protein [Thermus aquaticus Y51MC23]
 gi|218243500|gb|EED10029.1| integrase family protein [Thermus aquaticus Y51MC23]
          Length = 377

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 44/303 (14%), Positives = 97/303 (32%), Gaps = 41/303 (13%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQII---------RKSGDFDYRKITTKHIR 120
           T++    ++ K      +   +  S+  +  + I          + G    + +   H+R
Sbjct: 70  TVRDWAEDWLK-RKAAEVRPRTLESYRYHLAKAIPSLRDPTAHDRFGRMRLQSVQPLHVR 128

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL--SVERPKRKTEGIRPWTKED 178
             ++  + TP +       +  +F+ AVR E +  NP     V+ P RK+ G      E 
Sbjct: 129 RHLDGLRLTPHAMKNIRWLLHAVFEDAVRMELIHRNPVAPVKVKGPPRKSPGRTLEPDEA 188

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII----- 233
            +   +  +  S   LA   +L  GLR  ++     + +      +  ++    +     
Sbjct: 189 RRLLAALDAHPSTLALALRLMLTCGLRRGEALGLKWEDVDLKEGILHVRRAWAKVGGKGV 248

Query: 234 -----------TVELPDGFMKLLAM----------TPIGKETFFINND-KQKMNATQFSI 271
                       V +P   ++ L              + +   F   D  Q ++      
Sbjct: 249 ISEPKTSSGYRAVPIPPTTLERLRAYRESVQGLSEEEVQRSWLFPGRDPSQPVHPDAPDH 308

Query: 272 WFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRI 329
           + +    + G+ +   H +R    ++    GA    +    G    +     Y    +  
Sbjct: 309 FLRRLLARLGLPQVRVHDLRHTYGSLLLAHGAPVELVAERMGHANPNITLGIYRHLLEEE 368

Query: 330 RLG 332
           R G
Sbjct: 369 RRG 371


>gi|16612085|gb|AAL27448.1|AF430807_13 Int410 [Enterococcus faecalis]
          Length = 396

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 50/336 (14%), Positives = 109/336 (32%), Gaps = 45/336 (13%)

Query: 23  YYFRK--GHGRRIRLPYPHESTF--IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEY 78
           YYFR   G+ R  +    ++S F  I     A +    +    +   +       L   Y
Sbjct: 15  YYFRINLGYDRAGKKIQKYKSGFKTIKEAREAYSKILLEEPSDSISEETEM----LFENY 70

Query: 79  RKSAHWGSLAVNSR-ISFESYFDQIIRKSG---DFDYRKITTKHIRSGVESRKHTPSSAI 134
            +           +  ++E+  + I +           KI   H++        T  +  
Sbjct: 71  LEEIFLPWYKTQVKIRTYENRLNSIRKHFTYFYKLPVNKIEPLHVQKWQSKLFETLRA-- 128

Query: 135 QFLTSMRVLFKWAVRQ----EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS-FWSEG 189
            ++ +++ +F  A+ +         N    V   K++   I  WTKE+ ++  S  + E 
Sbjct: 129 SYIRNIQGIFSIAMDRAVVLGLADKNASKIVGNVKKQKTEIEFWTKEEFEKVISCIYKED 188

Query: 190 SQPR---LAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQ--------------KTG 230
                  ++F FL  +G+R  ++     + +  +  +  I                 KT 
Sbjct: 189 YYQHFLYISFWFLFMTGMRIGEATAIQWEDINFETGVLKINKTLYYKNLNYYEFVEPKTK 248

Query: 231 TIITVELPDG-----FMKLLAMT-PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284
                 + D        +   +   + K  F ++ +         S      +  AGV++
Sbjct: 249 ASTRFIVLDEDTLLLLKEWKEIQNSVVKTGFVMSYNGSPTQKYTISYAITRFSKLAGVHR 308

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
              H +R   A++    G     +    G + ++  
Sbjct: 309 IKIHALRHSHASLLIRMGENPLIIKERLGHEDIETT 344


>gi|313576828|gb|ADR67003.1| phage integrase family protein [Klebsiella pneumoniae subsp.
           pneumoniae]
          Length = 407

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/257 (15%), Positives = 85/257 (33%), Gaps = 16/257 (6%)

Query: 85  GSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKHTPS--SAIQFLTSMR 141
            S+  +         D+ +    G    ++I  + I   +E  K   +  +  + +  + 
Sbjct: 120 RSVTEDYAKDIWRSLDKDVFPAIGAIPVQEIKARTIVEALEPIKARGALETVRRLVQRIN 179

Query: 142 VLFKWAVRQEYVAINPCLSVERP--KRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLAF 196
            +  +AV    +  NP   V     K K + +     E++ +        +     R   
Sbjct: 180 EIMIYAVNTGLIDANPASGVGMAFEKPKKQNMPTLRPEELPRLMRSLVMSNLSVATRCLI 239

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIITVELPDGFMKLLAMTP--- 249
           E+ L + +R S++  A    +              KT     V L    +++L +     
Sbjct: 240 EWQLLTLVRPSEAPGARWAEIDLGAKLWTIPAERMKTKREHMVPLSPQVLEILEVVKPVS 299

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMA 309
             +E  F + +  K      +     K    G    AHG+R  ++T   +AG  A  + +
Sbjct: 300 AHREHIFPSRNNPKHAMNSQTANAALKRIGYGGKLVAHGLRAIASTAMNEAGFNADVIES 359

Query: 310 TYGWKTVDQAET-YTKG 325
                  ++    Y + 
Sbjct: 360 ALAHCDRNEVRRAYNRS 376


>gi|304382835|ref|ZP_07365318.1| integrase [Prevotella marshii DSM 16973]
 gi|304336020|gb|EFM02267.1| integrase [Prevotella marshii DSM 16973]
          Length = 410

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 45/268 (16%), Positives = 89/268 (33%), Gaps = 27/268 (10%)

Query: 90  NSRISFES-YFDQIIRKSGDFDYRKITTKHIRSGVE--SRKHTPSSAI--QFLTSMRVLF 144
           N+R        +    K  D  + +I    + +       K   S A   +    ++   
Sbjct: 146 NTRKQLSRFILNHY--KVKDLTFTQIEDDFLDNFQHYAKSKLGYSQAYFCRLAQLVKKTC 203

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF-----KSFWSEGSQPRLAFEFL 199
           K A  +          V+  K   +  R   K   ++        +  E    R  F F 
Sbjct: 204 KMAFNEGITERPILDFVKIEKGDAKMPRALDKASFEKLQSLKLNEYEKELETARNLFLFS 263

Query: 200 LYSGLRCSDSCRAGVQHL--QNN---IFSIKTQKTGTIITVELPDGFMKLLAM-TPIGKE 253
            Y+G+   D      +HL   +        + QKT ++  V+L      ++   +   ++
Sbjct: 264 CYTGVSYCDMMCLNQEHLFLDDEGKSWLKFQRQKTDSLSRVKLLPEAEHIIEKYSSEERD 323

Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATY 311
           T F N     +  T +    K    +AG+    +AH  R    T++ +AG     +    
Sbjct: 324 TLFPN-----IPYTTYRYLLKGLQHRAGITIPITAHLARHSFGTLTLEAGIPIESIAKMM 378

Query: 312 GWKTVDQAETYTKGADRIRLGIKNSRRI 339
           G  ++   + Y +  D+      +  R+
Sbjct: 379 GHSSIASTQIYAQITDQK--ISSDMDRL 404


>gi|315505957|ref|YP_004084844.1| integrase family protein [Micromonospora sp. L5]
 gi|315412576|gb|ADU10693.1| integrase family protein [Micromonospora sp. L5]
          Length = 329

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/299 (14%), Positives = 87/299 (29%), Gaps = 41/299 (13%)

Query: 55  TPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFES------------YFDQI 102
            P+      P   P     +   + ++     L+ ++R ++                D +
Sbjct: 3   RPEVLPRARPAALPAGPADVTEAWLRN---RRLSEHTRDAYRRDVTGWLTWCAEQAVDPL 59

Query: 103 IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162
                D +      +    G   R  TP++  + L+++   + + V+   V  NP  + +
Sbjct: 60  RATFLDVNAYGRELESTPRGRAGRPLTPATVARRLSALSSWYDFLVKLGAVPANPVSAAD 119

Query: 163 RPKRKTE--GIRPWTKEDMQQFKSFWSEGSQPRLAFE-----FLLYSGLRCSDSCRAGVQ 215
           RP+   +       T +++    +     + P  A        L   GLR  +     V 
Sbjct: 120 RPRVDRDHSATVGLTPDEVDALIAAAEADTGPAAARNRAAVALLADLGLRVGELVALDVS 179

Query: 216 HLQNNIFSIK---TQKTGTIITVELPDGFMKLLAM------------TPIGKETFFINND 260
            L             K G +    L  G    +               P       +   
Sbjct: 180 DLGTERGHRSIRFVGKGGKVRRRALTPGTAYAVDAYLAVRAAAQGVTVPELTGPLLVTAT 239

Query: 261 KQKMNATQFSIWFKAKATKAGV----NKSAHGVRKFSATISADAGATAHELMATYGWKT 315
             +++        +  A +AG+      S H +R   AT +   G    ++    G   
Sbjct: 240 GGRLDRHAVFRLVRRLAQRAGIAAWAKLSPHSLRHAFATTARSEGVPLEDVQDAMGHAD 298


>gi|258514708|ref|YP_003190930.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771]
 gi|257778413|gb|ACV62307.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771]
          Length = 641

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 57/297 (19%), Positives = 100/297 (33%), Gaps = 24/297 (8%)

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGVE 124
           P     L+S+Y         A ++         + I      G    + IT + I+    
Sbjct: 338 PGWGNNLLSQYLLERKREGCASSTLGMILHSCSRFIVFLDNHGIISEKGITPEVIKHFQA 397

Query: 125 SRKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-PWTKEDMQQF 182
              H T      +   +R   ++  R+  V     L+V         I    +   +   
Sbjct: 398 QDNHSTVEGKNAYAIKIRGFLRFLARRGLVPETLELAVSTEMAPHISIVNILSDNQIDAI 457

Query: 183 KSFWSEGSQP---RLAFEFLLYS--GLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITV 235
            +F     +P   R A   +L    GLR SD     +  +  +++  S   QKTG  + +
Sbjct: 458 YAFRQNADRPIEMRNAAIIMLGLRMGLRASDIANLKLTDISWKDSSISFIQQKTGVHLKL 517

Query: 236 ELP----DGFMKLLA--MTPIGKETFFINNDKQ--KMNATQFSIWFKAKATKAGVNKSAH 287
            LP    +   + +            FI++     + ++  F    KA  T    +++ H
Sbjct: 518 PLPVDVGNSLYRYICEGRPQSNSHHIFIHHRAPYCRFSSATFGRLLKAAVTAQCEDEAIH 577

Query: 288 GV---RKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIRLGIKNSRRIS 340
           G    RK  A+     G  A  + A  G   VD  + Y     D++RL     + I 
Sbjct: 578 GFHVTRKTFASKLLATGNPATTIAAALGHVGVDTVDEYLATNEDQMRLCAIGLKGIE 634


>gi|92117683|ref|YP_577412.1| phage integrase [Nitrobacter hamburgensis X14]
 gi|91800577|gb|ABE62952.1| phage integrase [Nitrobacter hamburgensis X14]
          Length = 363

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/253 (13%), Positives = 79/253 (31%), Gaps = 14/253 (5%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS--SAIQFLTSMRVL 143
            +A  ++   + +  ++ +       +    +  ++  +         +A + LT+ +  
Sbjct: 97  EVAKLTKEQIDRWHAEMAKAPARIRTKNGRRQRFKTTTDPENDRRRKSTANRILTTFKAA 156

Query: 144 FKWAVRQEYVAINPC-LSVERPKRKTEG-IRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201
              A R   V  +     V   +   +  IR  + ++ ++     S  S  RL     L 
Sbjct: 157 LNMAWRDGKVPTDAAWRRVTPFESVDQARIRYLSMDEAKRLLEACS-PSFKRLVR-VALE 214

Query: 202 SGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE---TFF 256
           +G R  +     V+          I+  K+G    V L    +  +     G+       
Sbjct: 215 TGARYGELIALRVEDFNADAGTLHIRDSKSGKPRHVVLTPEAVTFVVKVAKGRSPSSMLL 274

Query: 257 INNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWK 314
           +  + +       +   K     A ++   + H +R   A+ +   G     +    G  
Sbjct: 275 VKENGEPWQRDHQADPLKNACATAKIDPPINFHALRHTWASHAVMRGVALQIVARQLGHT 334

Query: 315 TVDQAE-TYTKGA 326
           T    E  Y   A
Sbjct: 335 TTRVTEQHYAHLA 347


>gi|315618297|gb|EFU98887.1| prophage lambda integrase [Escherichia coli 3431]
          Length = 339

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 52/304 (17%), Positives = 96/304 (31%), Gaps = 33/304 (10%)

Query: 59  EYINSPRKKPTTLKWLISEYRKSAHWG----SLAVNSRISFESYFDQIIRKSGDFDYRKI 114
           E  ++ +++   LK  +  Y K          +A  +          ++ + G+   + +
Sbjct: 40  ESPSATKRRGIRLKAWVDRYLKIQDTRLKNGDIAATTHKEKTRMAAYLVSRLGNHPLKDL 99

Query: 115 TTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAI--NPCLSVERPKRKTEG 170
             +     ++    K   S+A         ++K A     V    NP  +  +P  K   
Sbjct: 100 EVRDFALILDEWLDKDMVSTARVNRGLWVDIYKEAQHAGEVPPGWNPPEATRKPIPKVTR 159

Query: 171 IRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
            R    ED Q+  +   E    R A    + +G R  D C      + N    I   KTG
Sbjct: 160 AR-LALEDWQKIYNATPEKHFIRNAMLLAIVTGQRRDDICHMRFSDVWNEHLHITQGKTG 218

Query: 231 TIITVELPDGFMK--------LLAMTPIGKETFFINNDK----QKMNATQFSIWFKAKAT 278
             + + L              +          + I++      + M+    S +F     
Sbjct: 219 MRLALPLTLRCDAIGITLKDVIDGCRDRILSPYLIHSRHQKQPKPMSKDNLSDYFAKARD 278

Query: 279 KAGV-------NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY--TKGADRI 329
            AG+         + H  R  S  +    G     L    G K     + Y  T+G + +
Sbjct: 279 LAGIIPPAGKTPPTFHEQRSLSERLYRAQGIDTKTL---LGHKVQATTDRYNDTRGQEWV 335

Query: 330 RLGI 333
           +L I
Sbjct: 336 KLVI 339


>gi|261212929|ref|ZP_05927213.1| putative integrase [Vibrio sp. RC341]
 gi|260837994|gb|EEX64671.1| putative integrase [Vibrio sp. RC341]
          Length = 407

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 44/314 (14%), Positives = 85/314 (27%), Gaps = 51/314 (16%)

Query: 55  TPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI 114
              +     PR K  +L  L  ++  S     +  ++   ++      I   G       
Sbjct: 71  PESKHASGVPRAK--SLLQLTKQFLASKD-HDIRRSTLQRYDWVLRDFIEIYGKTRSSDT 127

Query: 115 TTKHIRSGVES---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
            +    +       +  T  +  + L ++     W  + EYV+ +    ++R K     I
Sbjct: 128 LSPRTLTEFRQELVKGKTGRTINRNLVTINAFLAWLYKMEYVSRDLSKVLQRVKESEVDI 187

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ-- 227
           +P++  ++           Q R     L+YSG+R  + C    + +   N    I+    
Sbjct: 188 QPFSMAEIDSILKHC-HQLQHRNIVTLLVYSGIRSGELCALAWEDVDFENKTIHIRRSTY 246

Query: 228 --------KTGTIITVELPDGFMKLLAMT--------PIGKETFFINNDKQK-------- 263
                   KT     V+L    +  L           P   +        +K        
Sbjct: 247 DMRGLKTTKTDKERFVDLLPPALDALKAQQYLTYSFEPKEYDVELPGQAYRKESLRFVFN 306

Query: 264 --------------MNATQFSIWFKAKATKAGVNKS-AHGVRKFSATISAD-AGATAHEL 307
                                  + A   K GV     + +R   A+     A      L
Sbjct: 307 PKVVREQKVSGYDYYGKRALGRMWTALCKKGGVRYRNQYQLRHTYASWMITHANVNVSYL 366

Query: 308 MATYGWKTVDQAET 321
               G   +     
Sbjct: 367 AQQMGHADITMVAR 380


>gi|110633561|ref|YP_673769.1| phage integrase [Mesorhizobium sp. BNC1]
 gi|110284545|gb|ABG62604.1| phage integrase [Chelativorans sp. BNC1]
          Length = 476

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/238 (15%), Positives = 71/238 (29%), Gaps = 15/238 (6%)

Query: 112 RKITTKHIRSGVESRKHTPSSA--IQFLTSMRVLFKWAVRQEYVAIN-PCLSVER-PKRK 167
           R I  +   S ++               +++R  F  A     +  + P   +   P   
Sbjct: 181 RAIGARRDISDLDPEALRKRKKTMNALTSTLRGAFALAWDNGEIDTDRPQRCLRHLPNVD 240

Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIK 225
              +    +E+ ++         +        LY+G R  +     V  +        + 
Sbjct: 241 RPRMVFLRREECKRLIEAARPDLREL--ILGALYTGCRVRELVYLKVADVGREGFGIYVS 298

Query: 226 TQKTGTIITVELPDGFMKL---LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
             K      V LP+  M     L     G E  F N D +  +  ++   F+      G+
Sbjct: 299 PSKNYRPRFVLLPEEGMAFFLSLCRKRQGHEYVFRNQDGRPWS-ERYKHLFRDLTDACGL 357

Query: 283 NKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAET-YTKGADRIRLGIKNSR 337
            KS   H +R   A+    AG     +    G   +   +  Y   A ++       R
Sbjct: 358 PKSTVFHSLRHTYASQLVQAGMQLSIVAKQLGHADIATVDRTYGHLAPQLSEAEVQRR 415


>gi|120401480|ref|YP_951309.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
 gi|120404558|ref|YP_954387.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
 gi|120406442|ref|YP_956271.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
 gi|119954298|gb|ABM11303.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
 gi|119957376|gb|ABM14381.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
 gi|119959260|gb|ABM16265.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
          Length = 349

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/242 (15%), Positives = 71/242 (29%), Gaps = 43/242 (17%)

Query: 125 SRKHTPSSA---IQFLTSMRVLFKWAVRQEYVAINPC----------------------- 158
            R  TP +A    + + ++R LF++ V       NP                        
Sbjct: 87  HRSSTPPAASTVNRRVAAVRALFEYLVMTGVCTDNPVPSPRRGQGLRQSQRGLLGHLGPG 146

Query: 159 ---LSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ 215
                    ++        +  D+  F +  +   + R     +L  GLR +++    + 
Sbjct: 147 RARSGGRLVRQPQRLPESLSTNDVDAFLATLATH-RDRAMVLVMLLGGLRSAEARGLLLT 205

Query: 216 HLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM-----TPIGKETF--FINNDKQ----K 263
            +      ++   K G    V +   F   LA       P G  T   F+          
Sbjct: 206 DVDMGRRRLRVIGKGGKERHVPVDAAFFTELAAYLRWERPPGLATPQCFVVLRGPTTGAP 265

Query: 264 MNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           ++       F+     +G  +   H +R    T  + AG     L A  G  + +    Y
Sbjct: 266 VSEAGLRSLFRRHRETSGATRVRPHRLRHTYGTELSAAGIDLLTLRALMGHVSPETTARY 325

Query: 323 TK 324
             
Sbjct: 326 VH 327


>gi|217422731|ref|ZP_03454234.1| site-specific recombinase, phage integrase family [Burkholderia
           pseudomallei 576]
 gi|217394962|gb|EEC34981.1| site-specific recombinase, phage integrase family [Burkholderia
           pseudomallei 576]
          Length = 228

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/215 (14%), Positives = 63/215 (29%), Gaps = 39/215 (18%)

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA------ 195
           ++F  AVR+     NP   +   K +T+  R  T +++   ++     +  + A      
Sbjct: 1   MIFAHAVRRGLRDRNPAREIGSAK-ETKRDRYITDDELDTVRAAIVASADDKTASARSFL 59

Query: 196 --FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT----GTIITVELPDGFMKLLAMTP 249
              +    +  R  D      Q + ++  S +  +T    G  + +E+     + L    
Sbjct: 60  CLIDLAYQTAQRIGDLLALNWQDVSDDGISFRPSQTVNRSGVRLLIEMTPDLQETLNRAR 119

Query: 250 IGK----ETFFINNDKQKMNATQFSIWFKAKATKA-------------------GVNKSA 286
            GK          +   +         +K    +A                    +    
Sbjct: 120 GGKIASIGPMICTHAGGRYTYIGAYSGWKRACLRARSAYEKDCKKKGITPNPKYLIGMHF 179

Query: 287 HGVR-KFSATISADAGATAHELMATYGWKTVDQAE 320
           H +R K         GA A +  +  G  T     
Sbjct: 180 HDLRAKALTDPKRQQGAAAAQ--SLAGHTTESMTA 212


>gi|15088744|ref|NP_150133.1| integrase [Streptococcus phage MM1]
 gi|15074890|emb|CAC48067.1| integrase [Streptococcus phage MM1]
          Length = 375

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/321 (12%), Positives = 112/321 (34%), Gaps = 48/321 (14%)

Query: 48  MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG 107
            +A+       + +++ + +  T + + + + KS    ++  +++ + +S   ++     
Sbjct: 42  QAAILLQEKINKKLSTKQVESITFEEIYNLFYKSWA-QTVKESTKHNCKSVDKKMKEVIP 100

Query: 108 -DFDYRKITTKHIRSGVESRKHTPS--SAIQFLTSMRVLFKWAVRQEYVAINP---CLSV 161
            D     +  + ++  +E    +    +A +    +R +F +AV+  Y+  N        
Sbjct: 101 SDTILANLDRRFLQEAIEKIIESNGYITAKKVRHRLRGIFNYAVQYSYIENNEVDYTTIP 160

Query: 162 ERPK----RKTEGIRPWTKEDMQQF------KSFWSEGSQPRLAFEFLLYSGLRCSDSCR 211
           ++PK     + +     T ++++        + +  + +   L       +G+R  +   
Sbjct: 161 QKPKTLEELEKKRNNFLTMQEIKALVDVLNRREYHQKYADMVLVLTL---TGMRYGELTA 217

Query: 212 AGVQHLQ--NNIFSIK------------TQKTGTIITVELPDGFMKLLAMTPI------- 250
             ++++    N   I              + T +I T+++ +  ++ +    +       
Sbjct: 218 LQLKNIDFETNKIEITGNFDSVNKIKTLPKTTNSIRTIKVSESVIEAIQRQIVRLSERFQ 277

Query: 251 ---GKETFFIN-NDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATA 304
                +  F      Q      F    K    +A + K  S+H  R    +  A++G   
Sbjct: 278 PLSSDDYIFCFEKWNQPTTIACFIQILKKYGKQAKIEKNLSSHIFRHSHISFLAESGLPI 337

Query: 305 HELMATYGWKTVDQA-ETYTK 324
             +M   G        E Y+ 
Sbjct: 338 KSIMDRVGHSNAKMTLEIYSH 358


>gi|326381313|ref|ZP_08203007.1| site-specific recombinase XerD [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326199560|gb|EGD56740.1| site-specific recombinase XerD [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 387

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/284 (13%), Positives = 92/284 (32%), Gaps = 43/284 (15%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG---VESRKHTPSSA---IQFLT 138
             +  N+  +         R  GD   +++T   +      + +    P +A    + + 
Sbjct: 89  PDIRANTVRADRESLAYARRAFGDTPVQRLTPASLIDWSLTLTTLAGQPLAASTKRRAIG 148

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRK----TEGIRPWTKEDMQQFKSFWSEGSQPRL 194
           S++ + K A+R  ++  +P   ++ P ++    ++    WT E M QF     +      
Sbjct: 149 SVQQVLKHAMRMRWITFDPSAELDAPAQREVVASDARDVWTPEQMDQFLDSVLDHRLAG- 207

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ---------------KTGTII-TVELP 238
            F   L  GLR  +        +  +   ++ +               KT   +  + +P
Sbjct: 208 CFALTLL-GLRREEVGGLRWCDVDLDRGELRIRQARVDVNGVDIIDEPKTARSVRDLPIP 266

Query: 239 DGFMKLLAMTPIGK--------------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284
              + +L    +                +          +   +++  F+ + T AG+  
Sbjct: 267 PRELTILRKMRVRHASERLAVGNPLADTDLLMSQITGTPLPVRKYTELFRKRRTMAGLPP 326

Query: 285 SA-HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
                +R  + +    AG  A  + + +G         Y +  D
Sbjct: 327 VLLRNLRHSNVSRMRAAGVPADVIASWHGHTERMTTAVYGRVTD 370


>gi|239905519|ref|YP_002952258.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
 gi|239795383|dbj|BAH74372.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
          Length = 362

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/230 (16%), Positives = 81/230 (35%), Gaps = 18/230 (7%)

Query: 101 QIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158
             I         +I  + I   +       + ++  ++L+ ++++F++ V  E    NP 
Sbjct: 97  HFIPAFAQRPVDEIRFEEIVEIIGKVYADRSQTTRSRYLSYLKMVFQYGVDYELTTKNPL 156

Query: 159 LSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA--FEFLLYSGLRCSD--SCRAGV 214
              ++PK +    +  T  D+ + K      ++P LA   E     G+R  +        
Sbjct: 157 KRWKKPKERPRDTK-LTYTDLMKIKEL----ARPHLAWAIEVAWNLGVRTGESELLALTW 211

Query: 215 QHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET-FFINNDKQKMNATQFSI 271
             +   ++   +   KT T   + +   F+  L +     +T + I    + +    F  
Sbjct: 212 NDIDWDDSSIKVYATKTKTTRVIPIAPEFLDRLQLMREKAQTGYIIEYQGKPLRK--FRR 269

Query: 272 WFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQA 319
             K  A KAG+      + +R   AT     G     +    G  +V   
Sbjct: 270 SLKTAAEKAGLTYPVVMYDIRHLFATTLLREGGDVAAVSKLMGHASVKMT 319


>gi|57242638|ref|ZP_00370575.1| integrase/recombinase (xerC) [Campylobacter upsaliensis RM3195]
 gi|57016567|gb|EAL53351.1| integrase/recombinase (xerC) [Campylobacter upsaliensis RM3195]
          Length = 354

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/194 (14%), Positives = 75/194 (38%), Gaps = 18/194 (9%)

Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGS------QPRLAFEFLLYSGLRCSDSCRAGVQHL-- 217
           R T+     +++++++F              + +L  + ++++G+R S++    ++ +  
Sbjct: 160 RGTKLPEFMSEDELKKFLEAIDNADFKANTIRNKLIIKIIIFTGIRVSEALHIKLKDISE 219

Query: 218 QNNIFSIKT-QKTGTIITVELPDGFMKLLA-----MTPIGKETFFINNDKQKMNATQFSI 271
           ++ ++ I+   K      V +    +  L               F+N     +     S 
Sbjct: 220 EDGLYHIRIHAKGNKYRLVMIKKELISTLLDNVKINYLSQDSLLFVNKKGTPLTQAYVSR 279

Query: 272 WFKAKATKAGVNKS---AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GAD 327
             +    KAG+ K    AH +R   AT+          +    G  +++ +  YT   ++
Sbjct: 280 IVEQILFKAGIRKQKNGAHMLRHTFATLLYKKQKDLVLVQEALGHASLNTSRIYTHFDSE 339

Query: 328 RIRLGIKNSRRISS 341
           +++L  K +  +S 
Sbjct: 340 KLKLAAKVAEELSK 353


>gi|154175422|ref|YP_001408733.1| oxygen-independent coproporphyrinogen III oxidase [Campylobacter
           curvus 525.92]
 gi|112802099|gb|EAT99443.1| oxygen-independent coproporphyrinogen III oxidase [Campylobacter
           curvus 525.92]
          Length = 267

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 44/282 (15%), Positives = 100/282 (35%), Gaps = 27/282 (9%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           ++++++      +L+ N+  ++     Q + +  D   + +    +        ++P + 
Sbjct: 1   MMTQFKTYLTNKNLSQNTIFAYLFALKQFLDRYDDVSRQNLQAYKLYLI---ENNSPKTV 57

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI--RPWTKEDMQQFKSFWSEGSQ 191
              L ++    + ++++      P L +   K + +       +K D + FK+   +   
Sbjct: 58  NLRLRAINCYLQ-SIKK------PKLQLSFVKVQQKSFLQNVISKADYEYFKACLLKDGH 110

Query: 192 PRLAFE--FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM----KLL 245
            +  F   FL  +G+R S+  +   +H+    F I   K   +  + +P        K L
Sbjct: 111 KKWYFVVRFLAATGVRVSELVKFKAEHVVLGYFDIY-SKGAKMRRIYIPKSLQASAKKWL 169

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGA 302
               I     F+N   + +     +   K  A   G+++S    H  R   A     +  
Sbjct: 170 DEIGIKSGFIFLNRFSKPITPRGIASELKKFARIYGLDQSVIYPHSFRHLFAKNFLASCN 229

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
               L    G  ++     Y +     R   +    I SV+D
Sbjct: 230 DIAFLADLMGHTSIQTTRIYLR-----RTAAEQRDLIDSVID 266


>gi|10956379|ref|NP_052828.1| site-specific tyrosine recombinase XerS [Bacillus anthracis]
 gi|21392873|ref|NP_652953.1| site-specific tyrosine recombinase XerS [Bacillus anthracis str.
           A2012]
 gi|47566509|ref|YP_022461.1| site-specific tyrosine recombinase XerS [Bacillus anthracis str.
           'Ames Ancestor']
 gi|165873427|ref|ZP_02218026.1| integrase/recombinase, phage integrase family [Bacillus anthracis
           str. A0488]
 gi|167636785|ref|ZP_02395068.1| integrase/recombinase, phage integrase family [Bacillus anthracis
           str. A0442]
 gi|167642201|ref|ZP_02400423.1| integrase/recombinase, phage integrase family [Bacillus anthracis
           str. A0193]
 gi|170689789|ref|ZP_02880959.1| integrase/recombinase, phage integrase family [Bacillus anthracis
           str. A0465]
 gi|170709646|ref|ZP_02900046.1| integrase/recombinase, phage integrase family [Bacillus anthracis
           str. A0389]
 gi|177656331|ref|ZP_02937224.1| integrase/recombinase, phage integrase family [Bacillus anthracis
           str. A0174]
 gi|190569527|ref|ZP_03022388.1| integrase/recombinase, phage integrase family [Bacillus anthracis
           Tsiankovskii-I]
 gi|227811617|ref|YP_002811628.1| integrase/recombinase, phage integrase family [Bacillus anthracis
           str. CDC 684]
 gi|229599771|ref|YP_002860851.1| integrase/recombinase, phage integrase family [Bacillus anthracis
           str. A0248]
 gi|254687687|ref|ZP_05151543.1| site-specific tyrosine recombinase XerS [Bacillus anthracis str.
           CNEVA-9066]
 gi|254739175|ref|ZP_05196877.1| site-specific tyrosine recombinase XerS [Bacillus anthracis str.
           Western North America USA6153]
 gi|254744974|ref|ZP_05202651.1| site-specific tyrosine recombinase XerS [Bacillus anthracis str.
           Kruger B]
 gi|254762469|ref|ZP_05214309.1| site-specific tyrosine recombinase XerS [Bacillus anthracis str.
           Australia 94]
 gi|301068233|ref|YP_003787004.1| tyrosine recombinase [Bacillus anthracis CI]
 gi|4894348|gb|AAD32436.1| pXO1-132 [Bacillus anthracis]
 gi|20520260|gb|AAM26142.1| integrase/recombinase, phage integrase family, (pXO1-132) [Bacillus
           anthracis str. A2012]
 gi|47552324|gb|AAT35489.1| integrase/recombinase, phage integrase family [Bacillus anthracis
           str. 'Ames Ancestor']
 gi|164710802|gb|EDR16380.1| integrase/recombinase, phage integrase family [Bacillus anthracis
           str. A0488]
 gi|167509884|gb|EDR85308.1| integrase/recombinase, phage integrase family [Bacillus anthracis
           str. A0193]
 gi|167527711|gb|EDR90550.1| integrase/recombinase, phage integrase family [Bacillus anthracis
           str. A0442]
 gi|170125607|gb|EDS94534.1| integrase/recombinase, phage integrase family [Bacillus anthracis
           str. A0389]
 gi|170666164|gb|EDT16957.1| integrase/recombinase, phage integrase family [Bacillus anthracis
           str. A0465]
 gi|172079691|gb|EDT64808.1| integrase/recombinase, phage integrase family [Bacillus anthracis
           str. A0174]
 gi|190559306|gb|EDV13330.1| integrase/recombinase, phage integrase family [Bacillus anthracis
           Tsiankovskii-I]
 gi|227007971|gb|ACP17713.1| integrase/recombinase, phage integrase family [Bacillus anthracis
           str. CDC 684]
 gi|229269390|gb|ACQ51026.1| integrase/recombinase, phage integrase family [Bacillus anthracis
           str. A0248]
 gi|300379318|gb|ADK08221.1| tyrosine recombinase [Bacillus cereus biovar anthracis str. CI]
          Length = 361

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 51/327 (15%), Positives = 100/327 (30%), Gaps = 56/327 (17%)

Query: 67  KPTTLKWLISEYRKSAHWG---SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
            P TL   I+E+ K   W     LAV +     +  D  I    +        +  +  +
Sbjct: 35  SPATLYAYITEFEKFLKWLISNRLAVENGKVVTNICDVPISTLENLPLN--EARTFQRYL 92

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQ-------EYVAINPCLSVERPKRKTEGIRPW-- 174
           +       +  +  ++++ LFK+  +         Y++ N    +E  K K +       
Sbjct: 93  QGEGIETRAINRTFSALKSLFKYLAQNTENEQGENYISRNVMDKIELHKEKVDAAARADD 152

Query: 175 -------TKEDMQ--QFKS-----------------FWSEGSQPRLAFEFLLYSGLRCSD 208
                   K+D+   QF +                 F  +  +       +L +GLR S+
Sbjct: 153 VANMIFNEKDDVAFLQFLANDYGEMLKDISPKKYSFFQRDKERDIAIISLILGTGLRVSE 212

Query: 209 SCRAGVQHLQNNIFSIKTQKTGTI-----ITVELPDGFMKLLAMTPI------GKETFFI 257
                +  +      +K  + G        T    D   + + + P        ++  F+
Sbjct: 213 VASLTISSINFRQGKVKVTRKGNKRSSVLATRSCLDDVQEYIKVRPSKYNCPQDEDLLFV 272

Query: 258 NNDKQKMNATQFSIWFK---AKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWK 314
            N K K          K     ++     +S H +R   AT           L    G  
Sbjct: 273 TNYKGKYTQLTVRAIQKLCDKYSSAFDEKRSPHKLRHTYATNHYKENKDLVLLRDQLGHT 332

Query: 315 TVDQAETYTKGADRIRLGIKNSRRISS 341
           +V+    YT   +  +   +   R+  
Sbjct: 333 SVEVTSIYTNINNEKKR--EAVDRLER 357


>gi|53711443|ref|YP_097435.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|154490858|ref|ZP_02030799.1| hypothetical protein PARMER_00775 [Parabacteroides merdae ATCC
           43184]
 gi|167762758|ref|ZP_02434885.1| hypothetical protein BACSTE_01116 [Bacteroides stercoris ATCC
           43183]
 gi|189461170|ref|ZP_03009955.1| hypothetical protein BACCOP_01817 [Bacteroides coprocola DSM 17136]
 gi|189464486|ref|ZP_03013271.1| hypothetical protein BACINT_00828 [Bacteroides intestinalis DSM
           17393]
 gi|212695418|ref|ZP_03303546.1| hypothetical protein BACDOR_04967 [Bacteroides dorei DSM 17855]
 gi|218131431|ref|ZP_03460235.1| hypothetical protein BACEGG_03049 [Bacteroides eggerthii DSM 20697]
 gi|237707983|ref|ZP_04538464.1| tyrosine type site-specific recombinase [Bacteroides sp. 9_1_42FAA]
 gi|237718310|ref|ZP_04548791.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4]
 gi|262406714|ref|ZP_06083263.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294644489|ref|ZP_06722249.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294808560|ref|ZP_06767306.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
 gi|298377021|ref|ZP_06986975.1| integrase [Bacteroides sp. 3_1_19]
 gi|298483541|ref|ZP_07001717.1| integrase [Bacteroides sp. D22]
 gi|301308604|ref|ZP_07214557.1| integrase [Bacteroides sp. 20_3]
 gi|319644409|ref|ZP_07998863.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_40A]
 gi|329960021|ref|ZP_08298517.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
 gi|46242813|gb|AAS83518.1| Int [Bacteroides fragilis]
 gi|52214308|dbj|BAD46901.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|154088606|gb|EDN87650.1| hypothetical protein PARMER_00775 [Parabacteroides merdae ATCC
           43184]
 gi|167699098|gb|EDS15677.1| hypothetical protein BACSTE_01116 [Bacteroides stercoris ATCC
           43183]
 gi|189432084|gb|EDV01069.1| hypothetical protein BACCOP_01817 [Bacteroides coprocola DSM 17136]
 gi|189438276|gb|EDV07261.1| hypothetical protein BACINT_00828 [Bacteroides intestinalis DSM
           17393]
 gi|212662053|gb|EEB22627.1| hypothetical protein BACDOR_04967 [Bacteroides dorei DSM 17855]
 gi|217986363|gb|EEC52700.1| hypothetical protein BACEGG_03049 [Bacteroides eggerthii DSM 20697]
 gi|229452494|gb|EEO58285.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4]
 gi|229457969|gb|EEO63690.1| tyrosine type site-specific recombinase [Bacteroides sp. 9_1_42FAA]
 gi|262355417|gb|EEZ04508.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292640180|gb|EFF58438.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294444241|gb|EFG12962.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
 gi|298266005|gb|EFI07664.1| integrase [Bacteroides sp. 3_1_19]
 gi|298270298|gb|EFI11883.1| integrase [Bacteroides sp. D22]
 gi|300833398|gb|EFK64015.1| integrase [Bacteroides sp. 20_3]
 gi|313158580|gb|EFR57974.1| site-specific recombinase, phage integrase family [Alistipes sp.
           HGB5]
 gi|317384129|gb|EFV65104.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_40A]
 gi|328533155|gb|EGF59924.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
          Length = 411

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 46/272 (16%), Positives = 98/272 (36%), Gaps = 29/272 (10%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQ------IIRKSGDFDYRKITTK---HIRSGVESR 126
            +Y K    G  A  + + + + +        I     D   +++T          + + 
Sbjct: 118 EDYEKQVEAGMKAKGTLLKYRTVYKHMQEFLDIRYHVKDIALKELTPAFISDFEMFLRTD 177

Query: 127 KHTPSSAIQFLTS-MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           KH  ++ +      +R +   A+  E++  +P    E  K +T      TK++++     
Sbjct: 178 KHCCTNTVWLYVCPLRTMVFIAINNEWLTRDPFREYEIKKEETT-RSFLTKDEIRLLMEG 236

Query: 186 WSEGSQPRLAFEFLLY---SGLRCSDSCRAGVQHLQN-----NIFSIKTQKTGTIITVEL 237
             + ++  L  +  L+   +GL  +D      ++++         +I  QKTG +  + L
Sbjct: 237 KLKNAKQELYRDLYLFCAFTGLSFADMRNLTEENIRTYFDEHEWININRQKTGVVSNIRL 296

Query: 238 PDGFMKLL--AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFS 293
            D   +++       G    F                 +A A + G+ K  + H  R  +
Sbjct: 297 LDIANRIIGKYRGLCGDGRIFPVPH-----YNTCLAGIRAVAKRCGITKHITWHQSRHTA 351

Query: 294 AT-ISADAGATAHELMATYGWKTVDQAETYTK 324
           AT I    G     + +  G K++   + Y K
Sbjct: 352 ATTIFLSNGVPIETVSSMLGHKSIKTTQIYAK 383


>gi|85707318|ref|ZP_01038402.1| probable site-specific integrase/recombinase [Roseovarius sp. 217]
 gi|85707509|ref|ZP_01038585.1| probable site-specific integrase/recombinase [Roseovarius sp. 217]
 gi|85667966|gb|EAQ22851.1| probable site-specific integrase/recombinase [Roseovarius sp. 217]
 gi|85668199|gb|EAQ23076.1| probable site-specific integrase/recombinase [Roseovarius sp. 217]
          Length = 363

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/255 (16%), Positives = 87/255 (34%), Gaps = 20/255 (7%)

Query: 89  VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HTPSSAIQFLTSMRVLFKW 146
            ++  ++++    +    GD      +   IR  V  R   H  + A   +T+ R   ++
Sbjct: 91  DSTLDTYQNILVHMFLVLGDAP-EAYSAHAIREFVLGRAGMHGVAHARITVTATRAFLRF 149

Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRP--WTKEDMQQFKSFWS--EGSQPRLAFEFLLYS 202
            +           ++           P      D+ +  +  S     + R    FL+  
Sbjct: 150 LIATGRCPAGRDQAIPNFAGWQLAPVPDFLNDTDITRIVAACSGEARLRDRAVILFLVRL 209

Query: 203 GLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAM-TPIGKETF---- 255
           GLR S+       H+   N   +I+  K+     + LP    + L      G+ +F    
Sbjct: 210 GLRASEVANLEFDHIDWRNGRIAIRGGKSRREEWLPLPQEVGEALLAYLDRGRPSFATPR 269

Query: 256 -FINNDK--QKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAGATAHELMA 309
            F+      + M+    +   +A   +AG+    + +H +R  +AT     G     + A
Sbjct: 270 VFVTAKNPMRPMSRFAVNCLVQAALDRAGIQSGRRGSHLLRHSAATAMLRHGVNLAGVGA 329

Query: 310 TYGWKTVDQAETYTK 324
               +++     Y K
Sbjct: 330 VLRHRSLSTTMQYAK 344


>gi|315038555|ref|YP_004032123.1| phage integrase family protein [Lactobacillus amylovorus GRL 1112]
 gi|312276688|gb|ADQ59328.1| phage integrase family protein [Lactobacillus amylovorus GRL 1112]
          Length = 377

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 51/304 (16%), Positives = 108/304 (35%), Gaps = 41/304 (13%)

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE-- 124
           K TTL  L  +   +     LA  +  ++++  + I +   D     I    +   +   
Sbjct: 67  KDTTLDKLKDKLISNMEEQGLAYKTIETYKANLNVINKTFKDQTVSTIKAVTVNRYLNDA 126

Query: 125 --SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP-----KRKTEGIRPW--T 175
              +K +  +   F+     +F +A +  Y+  NP   ++       K+K + I  W  T
Sbjct: 127 SYKKKLSNGTVHSFMVLFFKIFNYAEQFGYLKDNPNSKIKVNYRDESKKKLDKIENWYLT 186

Query: 176 KEDMQQFKSFWSEGSQP--RLAFEFLLYSGLRCS--------DSCRAGVQHLQNNIFSIK 225
            ++ +   ++  E  +P  +  F++L  +G+R          D  +    +  +   ++ 
Sbjct: 187 DDEFKTLMNYCDEKKRPDYKEFFQWLYLTGMRIGEGSAIQVKDIFKIDDTYYADVNGTLI 246

Query: 226 TQKT----------GTIITVELPDGFMKLLAMTPIGKET--FFINN--DKQKMNATQFSI 271
            +K             +  V LPD  ++L     + K+   +   N      +N +    
Sbjct: 247 CKKGWRKQPFTKTVKGMRKVSLPDQAVELYQKHKVDKKDDDYLFTNMYSGGPLNVSSVDR 306

Query: 272 WFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETY---TKG 325
           W      K  + K  S+H  R    +  A+AG     +    G +  +   + Y   TK 
Sbjct: 307 WLGIFNDKEELTKDISSHIFRHTHVSKLAEAGFPLPVISDRVGHENEETTRKIYLHITKK 366

Query: 326 ADRI 329
             + 
Sbjct: 367 VHKK 370


>gi|307258136|ref|ZP_07539886.1| Phage integrase family protein [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|306863321|gb|EFM95254.1| Phage integrase family protein [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
          Length = 338

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/245 (16%), Positives = 86/245 (35%), Gaps = 18/245 (7%)

Query: 94  SFESYFDQIIRKSGDFDYRKITTKHIRSG------VESRKHTPSSAIQFLTSMRVLFKWA 147
           S +++      +      + +T++ + +         ++  +P++  ++ +S+  +F  A
Sbjct: 80  SKQAHAQYFRERFQGRTLKSLTSEELINAIPTFCQRRNKPLSPATQNRYRSSLLRIFSLA 139

Query: 148 VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ-PRLAFEFLLYSGLRC 206
            +  +V   P +     K + +    W  E  Q  +   S   +  R    F L +G R 
Sbjct: 140 HKAGWVEKIPFI---MRKNEPKVRVSW-LEKSQAAELINSLNLEWMRNVCTFALLTGARM 195

Query: 207 SDSCRAGVQHLQ-NNIFSIKT---QKTGTIITVELPDGFMKLLAM--TPIGKETFFINND 260
           S+        +      +I T    K+G   ++ L +  ++LL         +  F+   
Sbjct: 196 SEILTLTWDKVNFAKNLAIVTNDKAKSGKARSLPLNNKAIELLQKIKAKSKSKYVFVRCS 255

Query: 261 KQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
                       F+    K G+     H +R   A+    AG     L    GW+T++  
Sbjct: 256 TGHAIGDIDRRDFRQACEKIGMPSFHFHDLRHTWASWHVQAGTPLFTLKEMGGWETLEMV 315

Query: 320 ETYTK 324
             Y  
Sbjct: 316 RKYAH 320


>gi|282864969|ref|ZP_06274023.1| integrase family protein [Streptomyces sp. ACTE]
 gi|282560394|gb|EFB65942.1| integrase family protein [Streptomyces sp. ACTE]
          Length = 394

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 52/366 (14%), Positives = 115/366 (31%), Gaps = 67/366 (18%)

Query: 19  GKIIYYFRKG-----HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
           GKI Y    G     +G+R +L    ++       + ++    ++   +       T+  
Sbjct: 12  GKIRYRAVIGIGKHENGKRRQLTITKDTA--KEVKAEISRIENEQNTGSFVPPHLITVNQ 69

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV---------- 123
            I ++ +      L   +  ++ +  D++  K G+   +++T + + + +          
Sbjct: 70  WIDQWLE-KKAEDLEETTVYNYRTTLDRVRGKLGNIKLQELTEEDVEAWMLWSLKFGRVR 128

Query: 124 ESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE-------GIRP 173
             +  TP   +S    L  ++ +   AV +  V +N    +  P++  +        + P
Sbjct: 129 GDKAGTPLGVTSVDMSLARLKDVLNRAVTKRLVQVNVASEISIPRKARKVERKTKGKLEP 188

Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKT-- 229
           W  +++  F      G +        L  GLR ++ C      +   ++   +   +T  
Sbjct: 189 WNVKEVHAFVQGI-AGDRLYAPLLLSLM-GLRPAEVCGLRWADIDLADDTLIVANTRTMM 246

Query: 230 --------------GTIITV---ELPDGFMKLLAMTPIGKETF----------FINNDKQ 262
                         G  +      + +   K  A+    K              +N   +
Sbjct: 247 GNKTVIEKDTKSMAGERVLPLPAPVKEALKKFKALQAAEKLALGTGYADVGYMCVNVTGE 306

Query: 263 KMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
                Q     +A    A +       +  R    T  A+ G   H L    G   V   
Sbjct: 307 VHTTKQLRT--RAYKLMADIGLRQVRLYDARASCFTYLANNGVPDHLLARWAGHTNVKTT 364

Query: 320 ET-YTK 324
           +  Y K
Sbjct: 365 KRWYVK 370


>gi|229070581|ref|ZP_04203819.1| Integrase [Bacillus cereus F65185]
 gi|228712486|gb|EEL64423.1| Integrase [Bacillus cereus F65185]
          Length = 361

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 50/327 (15%), Positives = 101/327 (30%), Gaps = 56/327 (17%)

Query: 67  KPTTLKWLISEYRKSAHWG---SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
            P TL   I+E+ K   W     LAV +     +  D  I    +        +  +  +
Sbjct: 35  SPATLYAYITEFEKFLKWLISNRLAVENGKVVTNICDVPITTLENLPLN--EARTFQRYL 92

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQ-------EYVAINPCLSVERPKRKTEGIRPW-- 174
           +       +  +  ++++ LFK+  +         Y++ N    +E  K K +       
Sbjct: 93  QGEGIETRAINRTFSALKSLFKYLAQNTENEQGENYISRNVMEKIELHKEKVDAAARADD 152

Query: 175 -------TKEDMQ--QFKS-----------------FWSEGSQPRLAFEFLLYSGLRCSD 208
                   K+D+   QF +                 F  +  +       +L +GLR S+
Sbjct: 153 VANMIFNEKDDVAFLQFLANDYGEMLKDISPKKYSFFQRDKERDIAIISLILGTGLRVSE 212

Query: 209 SCRAGVQHLQNNIFSIKTQKTGTI-----ITVELPDGFMKLLAMTPI------GKETFFI 257
                +  +      +K  + G        T    +   + + + P        ++  F+
Sbjct: 213 VASLTISSINFRQGKVKVTRKGNKRSSVLATRSCLEDIQEYIRVRPSKYNCPQDEDLLFV 272

Query: 258 NNDKQKMNATQFSIWFK---AKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWK 314
            N K K          K     ++     +S H +R   AT           L    G  
Sbjct: 273 TNYKGKYTQLTVRAIQKLCDKYSSAFDEKRSPHKLRHTYATNHYKENKDLVLLRDQLGHT 332

Query: 315 TVDQAETYTKGADRIRLGIKNSRRISS 341
           +V+    YT   ++ +   +   R+  
Sbjct: 333 SVEVTSIYTNINNKKKR--EAIDRLEK 357


>gi|168239055|ref|ZP_02664113.1| prophage DLP12 integrase (Prophage QSR' integrase) [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|194734718|ref|YP_002113567.1| prophage DLP12 integrase [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|194710220|gb|ACF89441.1| prophage DLP12 integrase [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197288225|gb|EDY27610.1| prophage DLP12 integrase (Prophage QSR' integrase) [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
          Length = 387

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/246 (16%), Positives = 85/246 (34%), Gaps = 31/246 (12%)

Query: 108 DFDYRKITTKHIRSGVESRKHTP---------SSAIQFLTSMRVLFKWA-VRQEYVAINP 157
           +   ++I  + + S     K  P         S+  + L  M+ + + A    +++   P
Sbjct: 112 NRKVKEIWQQKVESAKRKGKEAPVFEPKPVTTSTKAKHLALMKAILRAAERDWKWLEKAP 171

Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217
              ++ P  + + +R    E+ ++      E    R   +F L +GLR S+      Q +
Sbjct: 172 V--IKIPSVRNKRVRWLEHEEAKRLIDECPEPL--RSVVKFALATGLRRSNIINLEWQQI 227

Query: 218 QNN----IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF---- 269
                    + +  K+   I V L D   K+L         +   + K+ +         
Sbjct: 228 DMQRRVAWVNPEDSKSNRAIGVALNDTACKVLRGQIGKHHKWVFVHTKEGIRPDGSKTPT 287

Query: 270 --------SIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
                      + A   +AG+ +   H +R   A+    +G     L    GW++++   
Sbjct: 288 IRKMRVDDQRAWNAACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVR 347

Query: 321 TYTKGA 326
            Y   A
Sbjct: 348 RYAHLA 353


>gi|320087105|emb|CBY96873.1| Tyrosine recombinase xerC [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
          Length = 349

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 46/322 (14%), Positives = 86/322 (26%), Gaps = 39/322 (12%)

Query: 26  RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG 85
           R+G   R       E+     Y    +G  P        R+    L  +I  +    +  
Sbjct: 20  REGRRIRRHFNTKGEAEAFELYTKNESGDKPWLGKKEDRRR----LSEIIQLWH---NLH 72

Query: 86  SLAVNSRISFESYFDQIIRKSGD--------FDYRKITTKHIRSGVE--------SRKHT 129
             A+ +  S  +    +    GD         D+     K +R  ++             
Sbjct: 73  GQALVASKSRLAKLQIVCNGLGDPIASRLTAKDWAHYRDKRLRGEIDNGYHKDPEKWIAK 132

Query: 130 PSSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           P +  +    +  +F    R   +   NP   +   K   + +   T E + Q      +
Sbjct: 133 PITVNREQQYLEAVFNELKRLGEWSLPNPLDGIRVFKEAEKEMSWLTLEQIPQLLLACHQ 192

Query: 189 GSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
                L    E  L +G R S++ R     L     +    K     TV +     + L+
Sbjct: 193 YGHEDLTQIVEICLATGARWSEAERLTRPQLSPYKLTFTKTKGKKNRTVPITKWLYEKLS 252

Query: 247 MTPIGKETFFINNDKQKM--NATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATA 304
                          +       +F         +    +  H +R          G   
Sbjct: 253 -----------TRQGRMFKPCYQEFKKMLLLTDIELTEGQKTHVLRHTFGAHFMMNGGNI 301

Query: 305 HELMATYGWKTVDQAETYTKGA 326
             L    G   + +   Y+  A
Sbjct: 302 LVLQKILGHANIRETMKYSHFA 323


>gi|317120860|ref|YP_004100863.1| integrase family protein [Thermaerobacter marianensis DSM 12885]
 gi|315590840|gb|ADU50136.1| integrase family protein [Thermaerobacter marianensis DSM 12885]
          Length = 369

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/303 (13%), Positives = 95/303 (31%), Gaps = 46/303 (15%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
               T+  L+ E+       +    +   +     +I    G     ++T   I+  ++ 
Sbjct: 57  AVRMTVDELLDEWLAHVR-TNREGRTYDDYAYCTRRIRAAFGPMRVDRLTRAQIQRWLDE 115

Query: 126 RKHTPS-----------SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
            +  P            +  +   ++     +AVR  Y+  NP  ++  P+R+       
Sbjct: 116 LQQAPRDDGRPGNLSATTVQKHHRALHAALSYAVRMGYLGYNPADNLTLPRRQRSEPPML 175

Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ------- 227
           T+E ++Q     + G++    +    ++GLR  + C    + +  +  +I+ +       
Sbjct: 176 TREQLEQLLE-AALGTRWYPLWYVAAHTGLRVGELCGLWWEDIDWSRPAIRVRRALKQDR 234

Query: 228 ----------KTGTIITVELPDGFMKLLAMTPIGK-------------ETFFINNDKQKM 264
                     K      V L D   ++L      +             E  F     + +
Sbjct: 235 EGKRLILGDVKNHEARVVWLDDRTAEVLDRHRAEQQLEIARAQRWEHPEHVFTAPGGRFL 294

Query: 265 NATQFSIWFKAKATKAGV-NKSAHGVRKFSATISAD-AGATAHELMATYGWKTVD-QAET 321
                +   +  A + G+   S H +R    +      G +   +    G  +    AE 
Sbjct: 295 RPDVPTQVLRKHAKRLGLPPLSMHDLRHIHGSHLLQYHGWSITAVSERLGHYSPAFTAEV 354

Query: 322 YTK 324
           Y  
Sbjct: 355 YAH 357


>gi|315221869|ref|ZP_07863781.1| site-specific recombinase, phage integrase family [Streptococcus
           anginosus F0211]
 gi|315189102|gb|EFU22805.1| site-specific recombinase, phage integrase family [Streptococcus
           anginosus F0211]
          Length = 387

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 51/328 (15%), Positives = 106/328 (32%), Gaps = 47/328 (14%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD 110
           L GST K+E          T + L   + +S          R +    ++ +I   G   
Sbjct: 62  LNGSTVKKEMQVR------TYQELADLWLRSYQLTVKPQTFRATQRMLYNHLIPAFGTMK 115

Query: 111 YRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV---ERPKRK 167
             KIT  +I+  +              +  R + ++ V  + +  NP   V   + PKR+
Sbjct: 116 PNKITVYYIQDFINDLSKELVHYSVVHSINRRVLQYGVSLQLLPFNPARDVILPKVPKRE 175

Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPR-------LAFEFLLYSGLRCSDSCRAGVQHLQ-- 218
            + I+    E+++    +    S  +       + +  LL +G R  +        +   
Sbjct: 176 NKVIKFIAPENIKALMDYMESLSNQKYGYYLDYVLYSVLLATGCRFGEVVALEWSDIDLK 235

Query: 219 NNIFSIKT-------------QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN 265
               SI                K G  + + +    + +L +    +   F+  D Q   
Sbjct: 236 EKTISITKNYNRLLKLIGTPKSKAGVRV-ISIDKKTVNMLRLYKNRQRQLFLEVDSQVPT 294

Query: 266 A------TQFSIWFKAK----ATKAGVNK---SAHGVRKFSATISADAGATAHELMATYG 312
                   ++      +         +N    + H  R   A++  +AG +  EL    G
Sbjct: 295 VVFATPTKEYQNMATRQESLDRRLKEINCPRFTFHAFRHTHASLLLNAGISYKELQYRLG 354

Query: 313 WKTVDQA-ETYTK-GADRIRLGIKNSRR 338
             T+    + Y+    D+ +  +    +
Sbjct: 355 HATLATTMDIYSHLSKDKEKEAVSYYEK 382


>gi|218689865|ref|YP_002398077.1| integrase [Escherichia coli ED1a]
 gi|218427429|emb|CAR08327.2| integrase [Escherichia coli ED1a]
          Length = 437

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/333 (12%), Positives = 101/333 (30%), Gaps = 64/333 (19%)

Query: 48  MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG 107
            +A    +P  +     +K+  T+K L  ++        ++ N+   +ES    ++ K G
Sbjct: 62  YAAQFPDSPNLQAFGVSKKE-ITVKELEEKWL-DLKRMEISANAFNRYESVARTMVSKIG 119

Query: 108 DFDYRK---------ITTKHIRSGVESRKHTPSS-------AIQFLTSMRVLFKWAVRQE 151
                          I    +     S K+  ++          ++T++  +F++A    
Sbjct: 120 GSRLVSSVTKEELLYIRKDLLTGYQNSTKNKAAAKGRSVVTVNYYMTTIAGMFQFAADHG 179

Query: 152 YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCR 211
           Y+  NP   ++  KR      P T+++  +         Q +  +   +Y+G+R  +   
Sbjct: 180 YLEANPFQGIKPLKRARAEPDPLTRDEFIRLIDAC-RHQQTKNLWSLAVYTGMRHGELVS 238

Query: 212 AGVQHLQNNIFSIKTQKTGTII---------------------TVELPDGFMKLLAMTPI 250
              + +     +I  ++  T +                      + +     ++  +   
Sbjct: 239 LAWEDIDLKAGTITIRRNYTKLGEFTLPKTEASTNRVVHLIQPAISVLKNQAEMTRLGKQ 298

Query: 251 GKETFFINNDKQK-----------------------MNATQFSIWFKAKATKAGV-NKSA 286
                 +    +                                 ++    +AG+ ++ A
Sbjct: 299 YNIKVQLREYGRSVNHECTFVFNPQVVRKSEQVGFVYKVDSVGDSWETAIKRAGIRHRKA 358

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQA 319
           +  R   A  S  AGA    + +  G  +    
Sbjct: 359 YQSRHTYACWSLSAGANPSFIASQMGHASAQMV 391


>gi|326567428|gb|EGE17543.1| putative integrase/recombinase protein [Moraxella catarrhalis BC1]
 gi|326570556|gb|EGE20596.1| putative integrase/recombinase protein [Moraxella catarrhalis BC8]
 gi|326573199|gb|EGE23168.1| putative integrase/recombinase protein [Moraxella catarrhalis CO72]
          Length = 332

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 52/267 (19%), Positives = 99/267 (37%), Gaps = 28/267 (10%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF---DYRKITTKHIRSGVESR 126
           +L  +I  YR      SL  N + + ES  + ++++  D       +IT K + +  + R
Sbjct: 58  SLLEVIDIYRN--KVLSLRKNGKRA-ESIINIMVKQHPDLVTTAITQITPKQLSAYRDRR 114

Query: 127 --KHTPSSAIQFLTSMRVLFKWAVRQEYV-AINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
             + +  S +  L+ +  +F +A+ + Y+   NP   V+RP +     R  T E+  +  
Sbjct: 115 LLQVSQGSVLLELSFLNCVFNYAINELYIFETNPMNKVKRPSKPASRDRRITLEEEAKIL 174

Query: 184 --SFWSEGSQPRLA-------FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234
             + ++ G  P          F F L + +R  +       H+  N   I   K G    
Sbjct: 175 QWTGYTLGDVPDTCRKQVGWCFLFALQTAMRRGEILALTKDHIHENYVHISHSKNGMARN 234

Query: 235 VEL-PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKF 292
           V L       L  +TP+    F I           F++ ++    +  + +   H  R  
Sbjct: 235 VILNTTARQMLKQVTPLTDRLFCIR-------LDNFNLIWRRMRQQLWIKDLHFHDTRHE 287

Query: 293 SATIS-ADAGATAHELMATYGWKTVDQ 318
           + +    D      +L    G K +  
Sbjct: 288 AISRMVRDLNIPVEKLAKITGHKDIKT 314


>gi|298250455|ref|ZP_06974259.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
 gi|297548459|gb|EFH82326.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
          Length = 350

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/293 (12%), Positives = 84/293 (28%), Gaps = 47/293 (16%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSG-----DFDYRKITTKHIRSGVESRKHTPSS 132
           + +       A  +   + S  +  +            +  +T   +       + T   
Sbjct: 15  WLEELQANDRARGTIRRYRSAVEGFLVWYECCEQRSLTFATLTPITLVGYRNDLQRTQRR 74

Query: 133 A----IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT-EGIRPWTKEDMQQFKSFW- 186
           A       ++++R    W   + Y+  NP   ++   R+            +        
Sbjct: 75  ATSTVNGQISALRAFCAWLTEEHYLETNPARHLKLVGRQEVSSREGLDDAQVNALLRQAR 134

Query: 187 --SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDG 240
              +  +     + LL +G+R  +  +  +  +    ++   +I+  K      V L   
Sbjct: 135 TSRDPLRNYAIVQVLLQTGIRLDECSQLTLDDIELGERSGRVTIRQGKGNKACMVPLNAS 194

Query: 241 FMKLLA--------MTPIGKET---------------FFINNDKQKMNATQFSIWF---- 273
             + LA          P  K                  +++  K  +  +          
Sbjct: 195 VRQALAEYMASRLNCDPTVKAVARHWPAYSSDSPTIPLWLSQKKGILTTSAMRQMIDVLV 254

Query: 274 KAKATKAGVNK--SAHGVRKFSAT-ISADAGATAHELMATYGWKTVDQAETYT 323
           +  AT+  V    SAH +R   A    A+       L +  G  ++D    Y+
Sbjct: 255 RDTATRGLVPAQTSAHTLRHTFARNYLAEHPGDLVGLASLLGHTSLDTTRIYS 307


>gi|294775384|ref|ZP_06740903.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
 gi|294450766|gb|EFG19247.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
          Length = 267

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 44/282 (15%), Positives = 94/282 (33%), Gaps = 27/282 (9%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           ++++++      +LA N+  S+       +   G+ + + +       G       P + 
Sbjct: 1   MVTKFKNHLAKTNLAKNTVTSYVWTVQYFLNHYGEVNKKNLLA---YKGYLVENFKPQTV 57

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI--RPWTKEDMQQFKSFWSEGSQ 191
              L  +    ++  +++         V+  K + +       +  D +  K+       
Sbjct: 58  NLRLQGINKYLEFTKQEKL-------KVKFVKVQQKNFLENVISDADYKFLKAQLKVDGY 110

Query: 192 PRLAFE--FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF----MKLL 245
               F   F+  +G R S+      +H+Q     +   K G I  + +P        K L
Sbjct: 111 EEWYFIVWFMAATGARVSELLHIKAEHIQIGHLDLY-SKGGKIRRLYIPKNLSTEAAKWL 169

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGA 302
               +     F+N   Q++     +   K  A K G+NK     H  R   A    D   
Sbjct: 170 REIGLTSGYIFLNRFGQRITTRGIASQLKHFAEKYGMNKEVVYPHSFRHRFAKNFLDRFN 229

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
               L    G ++++    Y +     R   +  + +  VV+
Sbjct: 230 DLALLADLMGHESIETTRIYLR-----RTASEQQKIVDKVVN 266


>gi|218132478|ref|ZP_03461282.1| hypothetical protein BACPEC_00337 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992588|gb|EEC58590.1| hypothetical protein BACPEC_00337 [Bacteroides pectinophilus ATCC
           43243]
          Length = 350

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 50/349 (14%), Positives = 109/349 (31%), Gaps = 39/349 (11%)

Query: 26  RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG 85
           R  + +++         F   Y  +L  +   R  +          +++      S  + 
Sbjct: 10  RIKYTQKLNDIMDMLPDFTRDYFFSLEYTKQPRTKVAYAMDLRGFFEFIRERKYNS--YE 67

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFK 145
           SL   + +  E+             + ++  K+ R    S      +A + L+S+R  + 
Sbjct: 68  SLKQITLVDAENISS--TDIIEYLRHSRLYVKNGREVTNSE----RAAKRKLSSLRSFYG 121

Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ---------------QFKSFWSEGS 190
           +  +Q  +  NP   V+ PK   + I      ++                Q  +     +
Sbjct: 122 YYNKQGLMKKNPAFQVDMPKIHDQAITRLDVNEVAELLDNVESGNRLTKNQLAAHEELKT 181

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKL---- 244
           +       LL +G+R S+     +  +   N+   +  +K G    V   D   +     
Sbjct: 182 RDLALLTLLLGTGIRVSECVGLDINDVDFDNDRIKV-VRKGGAESFVYFGDEVREALLDY 240

Query: 245 ------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKA--TKAGVNKSAHGVRKFSATI 296
                 L      +   FI+ + +++         K  A       + + H +R    T 
Sbjct: 241 MDERSTLQPAAGHENALFISRNNKRLCVRSVENLVKKYAMTVTTVKHITPHKLRSTYGTN 300

Query: 297 SADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVVD 344
                   + +    G K V+   + Y +  D  R   +N  ++    D
Sbjct: 301 LYQESNDIYLVADVLGHKDVNTTRKHYAEIVDNNRRKARNMVQLRENGD 349


>gi|21229822|ref|NP_635739.1| site-specific recombinase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66766698|ref|YP_241460.1| site-specific recombinase [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|12746334|gb|AAK07444.1|AF324483_1 site-specific recombinase IntIA [Xanthomonas campestris pv.
           campestris]
 gi|21111319|gb|AAM39663.1| site-specific recombinase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66572030|gb|AAY47440.1| site-specific recombinase [Xanthomonas campestris pv. campestris
           str. 8004]
          Length = 327

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 45/309 (14%), Positives = 91/309 (29%), Gaps = 60/309 (19%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT---- 129
           L+ + R        ++ +  ++  +  + I  +G     ++    + + +          
Sbjct: 8   LLDQVRGRLRLRHYSLRTEQAYVGWIRRFILANGKRHPAQMGQAEVEAFLTDLATRGQVS 67

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINP-CLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
             +  Q L ++  L++  +  E     P   ++ R KR        + E++ +  +    
Sbjct: 68  AGTQNQALAALLFLYREILGLEL----PWMENLVRAKRPRRIPVVLSVEEVTRLLTMLEG 123

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFM---- 242
               RL    L  SG+R  +  R  ++ +        ++  K G    V LP        
Sbjct: 124 AC--RLMAGLLYGSGMRLLECLRLRIKDVDMVRCEIVVRDGKGGKDRRVPLPRSLRGELM 181

Query: 243 -------------------------KLLAMTPIGK-----ETFFINNDK----------- 261
                                     L    P        +  F    +           
Sbjct: 182 QQRERALLLHAADLAEGAGQVFLPHALARKYPSADVEPGWQYLFPGARRSVDPRSGRVGL 241

Query: 262 QKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQA 319
             ++         A   +AG++K A  H +R   AT   +AG     +    G K V   
Sbjct: 242 HHVSEEIRQRAVHAARRRAGIDKPATCHTLRHSFATHPLEAGHDIRTVQELLGHKDVATT 301

Query: 320 ETYTKGADR 328
           + YT    R
Sbjct: 302 QIYTHVLGR 310


>gi|331006889|ref|ZP_08330138.1| Phage like integrase [gamma proteobacterium IMCC1989]
 gi|330419305|gb|EGG93722.1| Phage like integrase [gamma proteobacterium IMCC1989]
          Length = 419

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 46/291 (15%), Positives = 99/291 (34%), Gaps = 28/291 (9%)

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-K 127
            +LK +   Y        L V +   +     Q   +  D     I  + I      R K
Sbjct: 119 ASLKTIFESYLAD---KDLKVGTVYDYRKTMQQTFSEYLDKPINTINRELILKIYRKRSK 175

Query: 128 HTPSSAIQFLTSMRVLFKW--AVRQE-----YVAINP------CLSVERPKRKT-----E 169
            +P+ A   +   R ++ +  AV +       +  NP         +++  R++     E
Sbjct: 176 ESPARANNAMRVFRAVYNYHRAVTRLNNGDYLLPENPVSILNETKVIKKVARRSTYIPRE 235

Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT--Q 227
            +  W +       S ++ G      F F+L +G R  ++     +H+     + +    
Sbjct: 236 TLPAWFEAVRSLKGSRFNSGDVISDYFIFVLLTGTRREEARMLKKRHVDLKRKTFRLVDT 295

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAH 287
           K   ++ + +    + L+ +    K  +       +     F    +    + G+N S H
Sbjct: 296 KNREVVELPMSQPLVDLITLRMSEKGEYLFTGQDSEKPFNSFKRPLEHLQKEVGLNFSTH 355

Query: 288 GVRKFSATISADAGATAHELMATYGWK---TVDQAETYT-KGADRIRLGIK 334
            +R+  AT++     + + +      K    +D    Y     DR+R   +
Sbjct: 356 DLRRTFATVAESLDISTYTIKKLINHKINDALDVTAGYVIVDLDRMRKATE 406


>gi|317178966|dbj|BAJ56754.1| integrase-recombinase protein [Helicobacter pylori F30]
          Length = 355

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/174 (14%), Positives = 64/174 (36%), Gaps = 15/174 (8%)

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIIT 234
           E + + +      ++ RL  + ++++G+R +++ +  ++    +N  ++I  +  G    
Sbjct: 178 ESIDKIEMSAKVRARNRLLIKIIVFTGMRSNEALQLKIKDFTLENGCYTILIKGKGDKYR 237

Query: 235 VELPDG------FMKLL---AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284
             +           + L    + P+  +  F N     +         +     AG+ + 
Sbjct: 238 AVMLKAFHIESLLKEWLIERKLYPVKNDLLFCNQKGSALTQAYLYKQVERIINFAGLRRE 297

Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
              AH +R   AT+          +    G  +++ +  YT   D+ RL    S
Sbjct: 298 KNGAHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTH-FDKQRLEEAAS 350


>gi|299535740|ref|ZP_07049061.1| phage integrase family site specific recombinase [Lysinibacillus
           fusiformis ZC1]
 gi|298728940|gb|EFI69494.1| phage integrase family site specific recombinase [Lysinibacillus
           fusiformis ZC1]
          Length = 376

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 54/331 (16%), Positives = 102/331 (30%), Gaps = 57/331 (17%)

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGV 123
           + +  TL   +  + K      L  N+  ++ES   + I    G +  + +T  H+    
Sbjct: 48  KPQEITLHDYLDFWMKEYVDLKLEPNTYYNYESTIRNHIAPHLGKYKVKSLTP-HVLQQF 106

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQ-----EYVAINPCLSVERPKRKTEGI-----RP 173
            + K     A Q L+ +  +   A+       +Y+  NP   VE  K K         + 
Sbjct: 107 INLKTREGYARQTLSIIIGILSKALNHAVYPYKYIKENPMHYVELMKDKKRKPTREELKL 166

Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ------ 227
            TKE+++   S   E     L F   L+ GLR  + C    +H+     +++ +      
Sbjct: 167 QTKENLRLINSILDEEHPFYLPFHIGLHCGLRVGEVCGLEWKHINFEEMTLEVEQQLVGI 226

Query: 228 --KTGTIITVELPDGFMKLLAMTPIG------------------------------KETF 255
             + G       P          P G                               +  
Sbjct: 227 KDENGKAQWQPRPPKSKAGYRTIPFGNTLAEMLKRIKKAQIENRLKYGEFYQKDPEHDYV 286

Query: 256 FINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKT 315
               + +    +      +  + K  ++ + H +R   AT   + G     +    G   
Sbjct: 287 CKKENGEHCTPSVIKYNTRKISEKLNISFNDHSLRHTHATTLIENGTPVKTVQKRLGHSR 346

Query: 316 VDQAE-TYTKGADRIRLGIKNSRRISSVVDS 345
               E  Y        L  K +R  +++ DS
Sbjct: 347 AAVTEDRYVH------LTEKMARDAANIFDS 371


>gi|299531115|ref|ZP_07044528.1| phage integrase family protein [Comamonas testosteroni S44]
 gi|298721072|gb|EFI62016.1| phage integrase family protein [Comamonas testosteroni S44]
          Length = 313

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/269 (15%), Positives = 84/269 (31%), Gaps = 36/269 (13%)

Query: 86  SLAVNSRISFE---SYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLT--SM 140
            LA ++    +     F+  + ++    +   +   ++  + S K T S +   L    +
Sbjct: 23  GLAESTLQVLQIQLRAFNAWLLEATGRSWEHASVDDLQVFLLSWKDTRSVSALRLKQWML 82

Query: 141 RVLFKWAVRQEYVAINPCLSVER-----PKRKTEGIRPWTKEDMQQF----KSFWSEGSQ 191
           + L++WA     V     L V R             RP +   + +      +  ++G +
Sbjct: 83  QRLYRWAKESGIVD----LGVHRALLPLRGGLRRPRRPPSSNAIAKLMELPDTKTAKGMR 138

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKLLAMTP 249
            R A E L  SGLR  +     +  +        I   K      V + +  M  +A   
Sbjct: 139 DRAALELLYGSGLRAGELLNITLDQVPASGKPMQI-WGKGSKERLVVVGEHAMYWIAQYK 197

Query: 250 IGKETFFI-NNDKQKMNATQF--------------SIWFKAKATKAGVNKSAHGVRKFSA 294
             ++         ++  +  F                       + G+  + H +R   A
Sbjct: 198 TARQVILAAGGHGKRSTSKLFVSSGRYPDYRYYQLRRMVSRYGRECGLRLTPHALRHAFA 257

Query: 295 TISADAGATAHELMATYGWKTVDQAETYT 323
           +      AT H +    G +  +    Y 
Sbjct: 258 SHLYQGKATLHTIQLLLGHERQETTAHYV 286


>gi|288927761|ref|ZP_06421608.1| integrase [Prevotella sp. oral taxon 317 str. F0108]
 gi|288330595|gb|EFC69179.1| integrase [Prevotella sp. oral taxon 317 str. F0108]
          Length = 410

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/230 (16%), Positives = 81/230 (35%), Gaps = 20/230 (8%)

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
              P++A + + + + +     +   +  +P L+  R   +       T E++ +  +  
Sbjct: 178 GQNPNTATKTMKTFKTITILGRKMGVIHHDPFLN-HRFHLEPVNRGFLTDEEILKIANKN 236

Query: 187 SEGSQ---PRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPD 239
               +    R  F F  ++GL   D      +++           K QKT     V L D
Sbjct: 237 LGIQRLELVRDLFVFSCFTGLAYIDVANLTPENIVTLDDKQWIMTKRQKTSVATNVLLLD 296

Query: 240 GFMKLLAMTPIGKETFFINNDKQ--KMNATQFSIWF-KAKATKAGVNK--SAHGVRKFSA 294
               ++       +T+    D +   M   Q +  + K  A   G+ K  + H  R   A
Sbjct: 297 IPKNIIE--KYSGKTY---RDGKLFPMLTNQRTNSYLKEIADICGIKKDLTFHMARHTFA 351

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
           T+S   G +   +    G   +   + Y +  ++      +  +++  +D
Sbjct: 352 TMSLSKGVSMESVSKMLGHTNIKTTQIYARITNKK--IEHDMEQLAGKLD 399


>gi|41179410|ref|NP_958719.1| Bbp50 [Bordetella phage BPP-1]
 gi|45569541|ref|NP_996610.1| integrase [Bordetella phage BMP-1]
 gi|45580793|ref|NP_996659.1| integrase [Bordetella phage BIP-1]
 gi|40950149|gb|AAR97715.1| Bbp50 [Bordetella phage BPP-1]
          Length = 401

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 50/338 (14%), Positives = 108/338 (31%), Gaps = 42/338 (12%)

Query: 49  SALTGSTPKREYINSPRKKPT-TLKWLISEYRKSAHWGSLAVNSRISFESYFD------- 100
               G+    EY  +       T+K  +  +       S+  +++  +ES  +       
Sbjct: 57  RIRHGTFSMAEYFPASGAGSGLTVKGWLDTWL---DTQSVENSTKAGYESAVNFWNNAAA 113

Query: 101 -------QIIRKSGDFDYRKITTKHIRSGVESRKH-TPSSAIQFLTSMRVLFKWAVRQEY 152
                   I    G    R +   H+ + +  R   T  +   +++ +R     AV  + 
Sbjct: 114 LVDRETKAIQATVGSLSLRALKPSHLLTAIAQRPDLTGKTVNNYVSVIRQALDLAVADKI 173

Query: 153 VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSC 210
           +  NP   V R K +     P+T+ + +   +  ++    ++    E   +SG R S+  
Sbjct: 174 IKENPASEVPRQKHQKPPPDPFTRAEAEAIIADMAKHYPEQVYNMVEAWFFSGPRTSEVF 233

Query: 211 RAGVQHLQ---------NNIFSIKTQ---KTGTIITVELPDGFMKLLAMTP-----IGKE 253
                ++            +   + +   KT     V L    +  L         +G+ 
Sbjct: 234 GQRWPNVDLFSAKLAIVEAVVRGEQKDSTKTNVARDVLLNSRALAALNRQAKHTRMVGEH 293

Query: 254 TFFINNDKQKMNATQ--FSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMAT 310
            +            +     ++     + G+  +  + +R   AT+   AG T       
Sbjct: 294 VWHDPRYGTPWTEERAFRRSYWTPCLKRLGIRYRRPYNMRHTYATMMLMAGMTPAFCARQ 353

Query: 311 YGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
            G        TY K  D  +  ++   R  + + +D P
Sbjct: 354 LGHSIEMFLRTYAKWLDGAQNDLE-MARFEATLGADLP 390


>gi|307313958|ref|ZP_07593572.1| integrase family protein [Escherichia coli W]
 gi|33413728|gb|AAN28248.1| Int [Enterobacteria phage WPhi]
 gi|306906275|gb|EFN36791.1| integrase family protein [Escherichia coli W]
 gi|315063206|gb|ADT77533.1| integrase [Escherichia coli W]
 gi|323380729|gb|ADX52997.1| integrase family protein [Escherichia coli KO11]
          Length = 326

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 45/307 (14%), Positives = 101/307 (32%), Gaps = 23/307 (7%)

Query: 26  RKGHGRRIRLPYPHESTFI--PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAH 83
           R   G+RIR  +  ++  +    Y  A       ++     R    TL  L+  + K  H
Sbjct: 18  RGRDGKRIRRKFERKAEAVAFERYTIAYA----SQKEWAGQRADRRTLSELLDIWWK-YH 72

Query: 84  WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK---HIRSGVESRKHTPSSAIQFLTSM 140
             +    ++    ++  + I   GD    +++ +     RS       + ++  + +  +
Sbjct: 73  GQNHEHGTKEF--NHLLKTISGIGDIPVSRMSKRALMDYRSMRLRDGISAATINRDMYRL 130

Query: 141 RVLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199
             +F   ++  E+   +P   +         +    K ++++  +  +      L     
Sbjct: 131 SGMFTKLIQLDEFSGQHPIHGLPPLAEANPEMTFLEKAEIEKLLNVLA--GDDLLVALLC 188

Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN 259
           L +G R ++        + N   +    K G   TV + +   K +      K       
Sbjct: 189 LSTGGRWTEVATLKPAQITNCRVTFLKTKNGKKRTVPISEELEKKVKEEASAKLF----- 243

Query: 260 DKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
              K++  +F    +        N++ H +R   A+     G     L    G  ++ Q 
Sbjct: 244 ---KVDYEKFCGILRRVKPDIPPNQATHILRHTFASHFMMNGGNIIALQQILGHASIQQT 300

Query: 320 ETYTKGA 326
             Y   A
Sbjct: 301 MAYAHLA 307


>gi|237713338|ref|ZP_04543819.1| tyrosine type site-specific recombinase [Bacteroides sp. D1]
 gi|317502920|ref|ZP_07961015.1| integrase [Prevotella salivae DSM 15606]
 gi|229446577|gb|EEO52368.1| tyrosine type site-specific recombinase [Bacteroides sp. D1]
 gi|315665954|gb|EFV05526.1| integrase [Prevotella salivae DSM 15606]
          Length = 437

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 46/272 (16%), Positives = 98/272 (36%), Gaps = 29/272 (10%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQ------IIRKSGDFDYRKITTK---HIRSGVESR 126
            +Y K    G  A  + + + + +        I     D   +++T          + + 
Sbjct: 144 EDYEKQVEAGMKAKGTLLKYRTVYKHMQEFLDIRYHVKDIALKELTPAFISDFEMFLRTD 203

Query: 127 KHTPSSAIQFLTS-MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           KH  ++ +      +R +   A+  E++  +P    E  K +T      TK++++     
Sbjct: 204 KHCCTNTVWLYVCPLRTMVFIAINNEWLTRDPFREYEIKKEETT-RSFLTKDEIRLLMEG 262

Query: 186 WSEGSQPRLAFEFLLY---SGLRCSDSCRAGVQHLQN-----NIFSIKTQKTGTIITVEL 237
             + ++  L  +  L+   +GL  +D      ++++         +I  QKTG +  + L
Sbjct: 263 KLKNAKQELYRDLYLFCAFTGLSFADMRNLTEENIRTYFDEHEWININRQKTGVVSNIRL 322

Query: 238 PDGFMKLL--AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFS 293
            D   +++       G    F                 +A A + G+ K  + H  R  +
Sbjct: 323 LDIANRIIGKYRGLCGDGRIFPVPH-----YNTCLAGIRAVAKRCGITKHITWHQSRHTA 377

Query: 294 AT-ISADAGATAHELMATYGWKTVDQAETYTK 324
           AT I    G     + +  G K++   + Y K
Sbjct: 378 ATTIFLSNGVPIETVSSMLGHKSIKTTQIYAK 409


>gi|167553904|ref|ZP_02347647.1| gp27 [Salmonella enterica subsp. enterica serovar Saintpaul str.
           SARA29]
 gi|205321766|gb|EDZ09605.1| gp27 [Salmonella enterica subsp. enterica serovar Saintpaul str.
           SARA29]
          Length = 349

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 45/318 (14%), Positives = 91/318 (28%), Gaps = 33/318 (10%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87
             GRRIR    +      A+ +        + ++   ++    L  +I  +    +    
Sbjct: 20  REGRRIR-RQFNTKGEAEAFEAFTKSENDDKPWLGK-KEDRRRLSEIIQLWH---NLHGQ 74

Query: 88  AVNSRISFESYFDQIIRKSGD--------FDYRKITTKHIRSGVE--------SRKHTPS 131
           A+ +  S  +    +    GD         D+     K +R  ++             P 
Sbjct: 75  ALVASKSRLAKLQIVCNGLGDPIASRLTAKDWAHYRDKRLRGEIDNGYHKDPAKWIAKPI 134

Query: 132 SAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDM-QQFKSFWSEG 189
           +  +    +  +F    R   +   NP   +   K   + +   T   + + F++    G
Sbjct: 135 TVNREQQYLEAVFNELRRLGEWSLPNPLDGIRVFKEAEKEMSWLTLSQLPELFRACKQYG 194

Query: 190 SQPRLAF-EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248
            +      +  L +G R  ++ R     L  +  +    K     TV +P      L+  
Sbjct: 195 KEDLTMIVKVCLATGARWGEAERLTRPQLSPHKLTFTKTKGKKNRTVPIPKWLYDELSE- 253

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELM 308
                 F       K    +F    K    +    +  H +R          G     L 
Sbjct: 254 -RQGRMF-------KPCYQEFKKMLKLTNIELTEGQKTHVLRHTFGAHFMMNGGNILVLQ 305

Query: 309 ATYGWKTVDQAETYTKGA 326
              G   + +   Y   A
Sbjct: 306 KILGHANIRETMKYAHFA 323


>gi|218528144|ref|YP_002418960.1| integrase family protein [Methylobacterium chloromethanicum CM4]
 gi|218520447|gb|ACK81032.1| integrase family protein [Methylobacterium chloromethanicum CM4]
          Length = 189

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 60/167 (35%), Gaps = 19/167 (11%)

Query: 175 TKEDMQQFKSFWSEG---SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ---- 227
           T+ + ++  +  S+G    + R+A      +GLR  +        L +    ++ Q    
Sbjct: 8   TEAEFKRLLAVVSQGRYGPRNRMALMLSYLAGLRVGEIASLRWGDLLDGEGKVREQLRLS 67

Query: 228 ----KTGTIITVELP-------DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK 276
               K G    V L        + +   LA  P   +   +   +   +A       +  
Sbjct: 68  AAVTKGGHARVVFLNVRLRREVEQYRASLAQPPTLPQPVLVTQKRSPFSANTLCQLMRGW 127

Query: 277 ATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
              AG++  S+H  R++  T  A AG +   +M   G + +   + Y
Sbjct: 128 YDLAGLDGGSSHSGRRWFITRLAHAGISPKAIMMLAGHRHLSTTQRY 174


>gi|307137987|ref|ZP_07497343.1| Rac prophage; integrase [Escherichia coli H736]
 gi|331641912|ref|ZP_08343047.1| integrase [Escherichia coli H736]
 gi|331038710|gb|EGI10930.1| integrase [Escherichia coli H736]
          Length = 411

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 44/314 (14%), Positives = 88/314 (28%), Gaps = 65/314 (20%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHIRSGVE---- 124
           T   L   + K      L  N+    +S    +            I    I +       
Sbjct: 82  TFGELCDIWAKIKE-TELTTNTMKKTKSQLKTLRIIISESTPISHIRYSDILNYRNELLH 140

Query: 125 ------------SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
                        +  T  +   ++  +  L ++A +  +++  P   V++ +R      
Sbjct: 141 GETLYLDNPRSNKKGRTVRTVDNYIALLCSLLRFAYQSGFISNKPFEGVKKLQRNRIKPD 200

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
           P +K +         +G    L  +F +YSGLR  +      + +     ++  ++  TI
Sbjct: 201 PLSKTEFNALMES-EKGQSQNLW-KFAVYSGLRHGELAALAWEDVDFEKGTVNVRRNLTI 258

Query: 233 ITVELPDG----------FMKLLAMTP-----IGKE-----TFFINNDKQK--------- 263
           + +  P                L          G       TF+     +          
Sbjct: 259 LDMFGPPKTNAGIRTVTLLQPALEALKEQYKLTGHHRKSEITFYHREYGRTEKQKLHFVF 318

Query: 264 ------------MNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMA 309
                        + +     + A   +AG+ +    H  R   A     AGA    + +
Sbjct: 319 MPRMCNGKQKPYYSVSSLGARWNAAVKRAGIRRRNPYHT-RHTFACWLLTAGANPAFIAS 377

Query: 310 TYGWKTVDQA-ETY 322
             G +T     E Y
Sbjct: 378 QMGHETAQMVYEIY 391


>gi|307271277|ref|ZP_07552556.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0855]
 gi|306512026|gb|EFM81017.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0855]
          Length = 376

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 48/296 (16%), Positives = 98/296 (33%), Gaps = 43/296 (14%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
            +     YRK    G L+ ++        D   +   D   +++T +  +  +     T 
Sbjct: 66  FRNWFEVYRK----GKLSQDNDGDIRRAVDFSEKYFPDTKLKELTRQEYQKALNDYGETH 121

Query: 131 SSA--IQFLTSMRVLFKWAVRQEYVAINPC---LSVERPKRKTEGIRPWTKEDMQQFKSF 185
           ++A   +  T MR   K A+ +  +  +P     ++ +   K E ++    ++       
Sbjct: 122 ATASVKKHHTYMRAALKDALEEGIIHRDPTYRVQAIGKKNPKHEELKYLNYQESIHLVHE 181

Query: 186 WSEGSQP----RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG----------- 230
             EG +P    R    F + +G R S+        +     ++K  KT            
Sbjct: 182 ILEGIKPTYTSRFIILFGIATGCRFSEIIGMTWDCIDFKNKTVKVNKTWDYKYTNTFSNT 241

Query: 231 ----TIITVELPDGFMKLLAMTP-------------IGKETFFINNDKQKMNATQFSIWF 273
               +   + + D  + LL                       F+N++ + ++ T  +   
Sbjct: 242 KNYQSKRIITIDDDTLDLLKKLQLHQKEYYLKSGLRNENNLVFLNDNMELVSNTAVNKVL 301

Query: 274 KAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGAD 327
           +    K G    + HG+R   A+I    G     +    G K +    +TY    D
Sbjct: 302 RKFCRKIGTKELTCHGLRHTHASIMLYKGINIKYVSRRLGHKDIVTTLQTYQHILD 357


>gi|312112853|ref|YP_004010449.1| integrase family protein [Rhodomicrobium vannielii ATCC 17100]
 gi|311217982|gb|ADP69350.1| integrase family protein [Rhodomicrobium vannielii ATCC 17100]
          Length = 344

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 62/329 (18%), Positives = 106/329 (32%), Gaps = 39/329 (11%)

Query: 36  PYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISF 95
           P   E  F P    A        E   +P  +     WL   Y + AH    A N+  ++
Sbjct: 11  PVEGEGIFAPDDHDAGRDDDFGPETYTAPDVRDAVAGWL--AYLRDAH--RYADNTLEAY 66

Query: 96  ESYFDQIIRKSGDFDYR--------KITTKHIRSGVESRKHTP---SSAIQFLTSMRVLF 144
           E    Q +      D R         +T    RS +  R+       S  + L+++R LF
Sbjct: 67  ERDSRQFLAHLAGKDARPVTLARLNALTPHDFRSFLADRRDDGAQSRSLSRTLSALRSLF 126

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ----------FKSFWSEGSQPRL 194
           +   R   +     L+V  PK      +P T+   ++            +    G++ + 
Sbjct: 127 RTLERTGALQNRSILAVALPKLPPRLPKPVTEAKAKEVVDEAALDGELSAHPWTGARNQA 186

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQ---NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251
               L  SGLR S++     +       ++  I+  K G      +       +A     
Sbjct: 187 VLLLLYGSGLRISEALGLNRKDAPLGPRDVLRIR-GKGGRERLAPVLPVAQTAIADYIEQ 245

Query: 252 KET-------FFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGA 302
                      F+     ++N     +      T   +  +A  H +R   AT     GA
Sbjct: 246 CPHKLEPQGPLFVGVKGGRLNPRIVQLLLARLRTNLALPATATPHALRHSFATHLLSRGA 305

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRL 331
               +    G  ++   + YT   DR RL
Sbjct: 306 DLRVIQELLGHASLSTTQGYT-AVDRDRL 333


>gi|256617395|ref|ZP_05474241.1| phage integrase [Enterococcus faecalis ATCC 4200]
 gi|256596922|gb|EEU16098.1| phage integrase [Enterococcus faecalis ATCC 4200]
          Length = 328

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 43/299 (14%), Positives = 91/299 (30%), Gaps = 46/299 (15%)

Query: 85  GSLAVNSRISFESYF-DQIIRKS--GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS-- 139
             +A N+ + ++ Y  ++I +          ++   H++   +   +   +A   +    
Sbjct: 25  KQVAFNTYVGYKHYVHNRIYKFFYPKKIKLNRLKPYHLQDFYQYMLNDDCTANTVIHYHA 84

Query: 140 -MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEF 198
            +R   + AV  E ++ N    V +PK+K    + + + ++ +     SE  +  L    
Sbjct: 85  FIRKALQEAVITELISTNVADKVRKPKKKQFVSQVYNQHEILKLLDILSE-EKLYLVVLL 143

Query: 199 LLYSGLRCSDSCRAGVQHLQ-------------------NNIFSIKTQKTGTI-ITVELP 238
             + GLR S+        +                    + +      K  +   T+ L 
Sbjct: 144 TAFYGLRRSEVLGLKWSAIDFLNKKIMINHVIIENPENMSQLIKKDQTKNSSSYRTLPLV 203

Query: 239 DGFMKLLAMTP----------------IGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
           +   + L                       E  F   D + M     +        K G+
Sbjct: 204 ETIERALVNQAKWQQDNRILLGEDYILKDSEYVFTMEDGRLMKPQYVTHRLSKLIKKNGL 263

Query: 283 NK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTK-GADRIRLGIKNSRR 338
            K   H +R  +A+I  D+G     +    G  +       YT   A       +    
Sbjct: 264 KKIRFHDLRHSNASIMLDSGQNMKSIQEWLGHASYSTTANLYTHLTAGVKERAAEALEN 322


>gi|229548402|ref|ZP_04437127.1| phage integrase family site specific recombinase [Enterococcus
           faecalis ATCC 29200]
 gi|255971030|ref|ZP_05421616.1| predicted protein [Enterococcus faecalis T1]
 gi|257088973|ref|ZP_05583334.1| predicted protein [Enterococcus faecalis CH188]
 gi|257420756|ref|ZP_05597746.1| recombinase [Enterococcus faecalis X98]
 gi|307275549|ref|ZP_07556690.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX2134]
 gi|307290609|ref|ZP_07570517.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0411]
 gi|312904825|ref|ZP_07763965.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0635]
 gi|229306618|gb|EEN72614.1| phage integrase family site specific recombinase [Enterococcus
           faecalis ATCC 29200]
 gi|255962048|gb|EET94524.1| predicted protein [Enterococcus faecalis T1]
 gi|256997785|gb|EEU84305.1| predicted protein [Enterococcus faecalis CH188]
 gi|257162580|gb|EEU92540.1| recombinase [Enterococcus faecalis X98]
 gi|306498323|gb|EFM67832.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0411]
 gi|306507654|gb|EFM76783.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX2134]
 gi|310631831|gb|EFQ15114.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0635]
 gi|315143975|gb|EFT87991.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX2141]
 gi|315158786|gb|EFU02803.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0312]
 gi|315161044|gb|EFU05061.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0645]
 gi|315576493|gb|EFU88684.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0630]
          Length = 389

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 43/299 (14%), Positives = 91/299 (30%), Gaps = 46/299 (15%)

Query: 85  GSLAVNSRISFESYF-DQIIRKS--GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS-- 139
             +A N+ + ++ Y  ++I +          ++   H++   +   +   +A   +    
Sbjct: 86  KQVAFNTYVGYKHYVHNRIYKFFYPKKIKLNRLKPYHLQDFYQYMLNDDCTANTVIHYHA 145

Query: 140 -MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEF 198
            +R   + AV  E ++ N    V +PK+K    + + + ++ +     SE  +  L    
Sbjct: 146 FIRKALQEAVITELISTNVADKVRKPKKKQFVSQVYNQHEILKLLDILSE-EKLYLVVLL 204

Query: 199 LLYSGLRCSDSCRAGVQHLQ-------------------NNIFSIKTQKTGTI-ITVELP 238
             + GLR S+        +                    + +      K  +   T+ L 
Sbjct: 205 TAFYGLRRSEVLGLKWSAIDFLNKKIMINHVIIENPENMSQLIKKDQTKNSSSYRTLPLV 264

Query: 239 DGFMKLLAMTP----------------IGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
           +   + L                       E  F   D + M     +        K G+
Sbjct: 265 ETIERALVNQAKWQQDNRILLGEDYILKDSEYVFTMEDGRLMKPQYVTHRLSKLIKKNGL 324

Query: 283 NK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTK-GADRIRLGIKNSRR 338
            K   H +R  +A+I  D+G     +    G  +       YT   A       +    
Sbjct: 325 KKIRFHDLRHSNASIMLDSGQNMKSIQEWLGHASYSTTANLYTHLTAGVKERAAEALEN 383


>gi|29375109|ref|NP_814262.1| phage integrase family site specific recombinase [Enterococcus
           faecalis V583]
 gi|227553843|ref|ZP_03983892.1| phage integrase family site specific recombinase [Enterococcus
           faecalis HH22]
 gi|229547634|ref|ZP_04436359.1| phage integrase family site specific recombinase [Enterococcus
           faecalis TX1322]
 gi|255973543|ref|ZP_05424129.1| conserved hypothetical protein [Enterococcus faecalis T2]
 gi|256852450|ref|ZP_05557826.1| site-specific recombinase [Enterococcus faecalis T8]
 gi|256957621|ref|ZP_05561792.1| conserved hypothetical protein [Enterococcus faecalis DS5]
 gi|256959670|ref|ZP_05563841.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
 gi|256963244|ref|ZP_05567415.1| conserved hypothetical protein [Enterococcus faecalis HIP11704]
 gi|257080140|ref|ZP_05574501.1| conserved hypothetical protein [Enterococcus faecalis JH1]
 gi|257085830|ref|ZP_05580191.1| conserved hypothetical protein [Enterococcus faecalis D6]
 gi|293384862|ref|ZP_06630705.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis R712]
 gi|293389152|ref|ZP_06633619.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis S613]
 gi|300862196|ref|ZP_07108276.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TUSoD Ef11]
 gi|307268561|ref|ZP_07549933.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX4248]
 gi|307272288|ref|ZP_07553548.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0855]
 gi|307282786|ref|ZP_07562986.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0860]
 gi|312908160|ref|ZP_07767138.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis DAPTO 512]
 gi|312952113|ref|ZP_07770994.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0102]
 gi|312979096|ref|ZP_07790811.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis DAPTO 516]
 gi|21693260|gb|AAM75207.1|AF454824_1 putative integrase [Enterococcus faecalis]
 gi|29342568|gb|AAO80333.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis V583]
 gi|227177096|gb|EEI58068.1| phage integrase family site specific recombinase [Enterococcus
           faecalis HH22]
 gi|229307126|gb|EEN73113.1| phage integrase family site specific recombinase [Enterococcus
           faecalis TX1322]
 gi|255966415|gb|EET97037.1| conserved hypothetical protein [Enterococcus faecalis T2]
 gi|256712304|gb|EEU27336.1| site-specific recombinase [Enterococcus faecalis T8]
 gi|256948117|gb|EEU64749.1| conserved hypothetical protein [Enterococcus faecalis DS5]
 gi|256950166|gb|EEU66798.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
 gi|256953740|gb|EEU70372.1| conserved hypothetical protein [Enterococcus faecalis HIP11704]
 gi|256988170|gb|EEU75472.1| conserved hypothetical protein [Enterococcus faecalis JH1]
 gi|256993860|gb|EEU81162.1| conserved hypothetical protein [Enterococcus faecalis D6]
 gi|291077866|gb|EFE15230.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis R712]
 gi|291081523|gb|EFE18486.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis S613]
 gi|300848721|gb|EFK76478.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TUSoD Ef11]
 gi|306503642|gb|EFM72873.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0860]
 gi|306511177|gb|EFM80187.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0855]
 gi|306515050|gb|EFM83593.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX4248]
 gi|310625868|gb|EFQ09151.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis DAPTO 512]
 gi|310629895|gb|EFQ13178.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0102]
 gi|311288130|gb|EFQ66686.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis DAPTO 516]
 gi|315026260|gb|EFT38192.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX2137]
 gi|315028513|gb|EFT40445.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX4000]
 gi|315167736|gb|EFU11753.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX1341]
 gi|315574914|gb|EFU87105.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0309B]
 gi|315582361|gb|EFU94552.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0309A]
 gi|329575038|gb|EGG56590.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX1467]
          Length = 389

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 43/299 (14%), Positives = 91/299 (30%), Gaps = 46/299 (15%)

Query: 85  GSLAVNSRISFESYF-DQIIRKS--GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS-- 139
             +A N+ + ++ Y  ++I +          ++   H++   +   +   +A   +    
Sbjct: 86  KQVAFNTYVGYKHYVHNRIYKFFYPKKIKLNRLKPYHLQDFYQYMLNDDCTANTVIHYHA 145

Query: 140 -MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEF 198
            +R   + AV  E ++ N    V +PK+K    + + + ++ +     SE  +  L    
Sbjct: 146 FIRKALQEAVITELISTNVADKVRKPKKKQFVSQVYNQHEILKLLDILSE-EKLYLVVLL 204

Query: 199 LLYSGLRCSDSCRAGVQHLQ-------------------NNIFSIKTQKTGTI-ITVELP 238
             + GLR S+        +                    + +      K  +   T+ L 
Sbjct: 205 TAFYGLRRSEVLGLKWSAIDFLNKKIMINHVIIENPENMSQLIKKDQTKNSSSYRTLPLV 264

Query: 239 DGFMKLLAMTP----------------IGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
           +   + L                       E  F   D + M     +        K G+
Sbjct: 265 ETIERALVNQAKWQQDNRILLGEDYILKDSEYVFTMEDGRLMKPQYVTHRLSKLIKKNGL 324

Query: 283 NK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTK-GADRIRLGIKNSRR 338
            K   H +R  +A+I  D+G     +    G  +       YT   A       +    
Sbjct: 325 KKIRFHDLRHSNASIMLDSGQNMKSIQEWLGHASYSTTANLYTHLTAGVKERAAEALEN 383


>gi|215487860|ref|YP_002330291.1| predicted integrase [Escherichia coli O127:H6 str. E2348/69]
 gi|215265932|emb|CAS10341.1| predicted integrase [Escherichia coli O127:H6 str. E2348/69]
          Length = 420

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 56/356 (15%), Positives = 114/356 (32%), Gaps = 51/356 (14%)

Query: 13  KERTRHGKIIYYFRKGHGRRIRLPYPHESTF-------IPAYMSAL-------TGSTPKR 58
           ++  +     + ++ G   R+ L   + + F       +   ++A         G   KR
Sbjct: 33  RKSDKLPNWRFRYKLGGKSRVVLIGSY-TDFSLAKAREVARELAARVSLGYDVAGEKQKR 91

Query: 59  EYINSPRKKPTT----LKWLISEYRKSAHWGSLAVNSRIS---FESYFDQIIRKSGDFDY 111
           +     + +       +  L +EY        +    +       S    I+   G    
Sbjct: 92  KAEALEKIEAQKNAKRVSDLAAEYYS----RQIEPTYKHPELFRSSLQKNIVASIGKMKI 147

Query: 112 RKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
             +  KHI   +++   + +P+ A   L  ++ LF +AV +  + +NP +S        +
Sbjct: 148 EDVRPKHIDYVLQNVLERGSPTVANDVLRMLKRLFDYAVVRGMIEVNPAISFSSKDAGGK 207

Query: 170 G---IRPWTKEDMQQFKSFWSEG----SQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNN 220
                R  T+E++  F     +G     +  L F+ +L  G+R  + C A     +L   
Sbjct: 208 EQGRKRALTREELVMFFKALRKGRGISRENELTFKIILALGVRKMELCAAEWSEFNLDEK 267

Query: 221 IFSIK--TQKTGTIITVELPDGFMKLLA--MTPIGKETFFINNDKQKMNAT--------Q 268
           ++       K G  I + L D  ++ +       G   + I   + +  +          
Sbjct: 268 VWHFPADRAKNGEEIDIPLADPVIEWIKEIRLFAGNSRWLIPARRGRTTSHVSRSTLNMV 327

Query: 269 FSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
                K          S H +R+   T  A  G            K       Y +
Sbjct: 328 LPSVLKEMPDVE--PFSIHDLRRTMRTQMAALGIDPVIAERCLNHKIPGVEGIYNR 381


>gi|330939447|gb|EGH42803.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. pisi str. 1704B]
          Length = 382

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 45/304 (14%), Positives = 99/304 (32%), Gaps = 60/304 (19%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISF---ESYF----DQIIRKSGDFDYRKITTKHIRSG 122
           +L++L  E+ +S  +  L   ++  +            ++ +  G+   +K T   ++  
Sbjct: 76  SLQYLCDEFHRSQQFKELTKKTQDDYCYSRDVLLVYPTKLDKPLGELAVKKFTPAMVQRI 135

Query: 123 VESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
           ++      TPS A   L  +R L +W   + +V  NP   +E PK + +   P +   + 
Sbjct: 136 IDKIAEAGTPSKAAHGLRYLRRLMQWGRNRGFVTDNPAKGIEAPKERKQRRLPDSTVMVD 195

Query: 181 QFKSFWSEGSQPR-----------LAFEFLLYSGLRCSDSCRAGVQH-LQNNIFSIKTQK 228
             K    +G   R              E      LR  ++     ++ L+  + + + + 
Sbjct: 196 LIKFAHQQGQLKRGEKGACSPYLWYVMEIGYLCRLRGIETITLTDENELEEGVLTNRRKG 255

Query: 229 TGTIITVELPDGFMKLLAMTPIGKETF----------------FINNDKQKMNATQFSIW 272
           +   I    P       A   +  +T+                 ++    +++ +     
Sbjct: 256 SRDNIVRWTPRLRAAWDAAKAVRTDTWQRLKKPVPFRADQRFLIVSASGGQLSKSGLDTA 315

Query: 273 FKAKATKAGVNKSA---------HGV-RK----FSATISADAGATAHELMATYGWKTVDQ 318
           F+   T+A + K           H   RK       T +    A+        G +    
Sbjct: 316 FQRLITQA-IEKGVLTEAQRFGMHDFKRKGITDTIGTRAGKQQAS--------GHRDESM 366

Query: 319 AETY 322
            + Y
Sbjct: 367 MDVY 370


>gi|304311457|ref|YP_003811055.1| Phage integrase, probably fragment [gamma proteobacterium HdN1]
 gi|304313109|ref|YP_003812707.1| phage integrase [gamma proteobacterium HdN1]
 gi|301797190|emb|CBL45408.1| Phage integrase, probably fragment [gamma proteobacterium HdN1]
 gi|301798842|emb|CBL47077.1| phage integrase [gamma proteobacterium HdN1]
          Length = 310

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/264 (14%), Positives = 78/264 (29%), Gaps = 31/264 (11%)

Query: 91  SRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAV 148
           +   + +    + R         ITT  +    +    K + +S   +   +R++F  A 
Sbjct: 20  TAQGYRTAARVLERTLPKKSASDITTDELLLWRKQLLGKVSVNSFNTYARHLRIIFAHAE 79

Query: 149 RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR------LAFEFLLYS 202
           +   +A NP   ++  KR  +       +D+Q+       G   R      +   FLL +
Sbjct: 80  KNGLIASNPIAELKPIKRLQKPKHV-AYDDIQRVLRQLESGQLVRDGWFWAILVRFLLST 138

Query: 203 GLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPD------------GFMKLLAMT 248
           G+R          HL        +    +   +   +P                + L   
Sbjct: 139 GIRRRQLVNLKWGHLDFERKTILLTQAGSKNTLEWRIPMMASTAYDLMVLKERFENLGTK 198

Query: 249 PIGKETFF--INNDKQKMNATQF-----SIWFKAKATKAGVNKSAHGVRKFSATISADA- 300
                  F       ++   T+      + +F   +    +   AH +R    T    A 
Sbjct: 199 ITSTMQVFNCTLLRNRRWKHTELKPHMVTTFFWQISKATNIKIGAHRLRHTLGTRLGTAD 258

Query: 301 GATAHELMATYGWKTVDQAETYTK 324
            A    +    G  ++   + Y  
Sbjct: 259 DANLLVIQQLLGHASLTSTQVYVH 282


>gi|300949489|ref|ZP_07163485.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 116-1]
 gi|300451065|gb|EFK14685.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 116-1]
          Length = 380

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 59/359 (16%), Positives = 114/359 (31%), Gaps = 52/359 (14%)

Query: 9   PFVTKERT-RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTP----------K 57
           P +  +   R GK+ + ++     R       E+        A T              +
Sbjct: 13  PNLYCKLDKRTGKVYWQYKHPISGRFHSLGTDEAEAKQVASEANTIIAEQRTRQILGINE 72

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHWG----SLAVNSRISFESYFDQIIRKSGDFDYRK 113
           R       +   T+   + +Y            L  NS               G    + 
Sbjct: 73  RLARMKGNRTDITVSSWLDKYELVQEERLKHNELRPNSFRQKAKPIRLFREHCGMQYLKD 132

Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMRVL----FKWAVRQEYVAI--NPCLSVERPKRK 167
           IT   I    ++ K       +    +R++    FK A    +V    NP  + ++P+ K
Sbjct: 133 ITALDISEITDAVKAEGH--NRMAQVVRMVLIDVFKEAQHAGHVPPGYNPAQATKQPRNK 190

Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSIK 225
               +  + E+ +   +   +  QP L    LL   +G R  D C      + +++  I+
Sbjct: 191 -ISRQRLSLEEWKAIYTSAEQ-QQPYLQCGMLLAIVTGQRLGDICNMKFSDVWDDMLHIE 248

Query: 226 TQKTGTIITVEL---PDGFMKLLAMTPIGKETFFINN-------------DKQKMNATQF 269
            +KTGT + + L    +     L+          ++                 +++A   
Sbjct: 249 QEKTGTRLAIPLSLRNEALNITLSDVISKCRDAVVSKYLVHFRHSTSQASRGDQVSAKTL 308

Query: 270 SIWFKAKATKAGVNK------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           +  FK    K+G+        + H  R  S  +  + G    +L    G KT+   + Y
Sbjct: 309 TSTFKKARDKSGLTWEEGTAPTFHEQRSLSERLYREQGIDTQKL---LGHKTMKMTDRY 364


>gi|115534300|ref|YP_783837.1| Orf5 [Nostoc sp. PCC 7524]
 gi|21703338|gb|AAM76170.1|AF516141_5 Orf5 [Nostoc sp. PCC 7524]
 gi|349732|gb|AAA17517.1| integrase/resolvase recombinase [Plasmid pDU1]
 gi|29838551|gb|AAO92602.1| integrase/resolvase [Shuttle vector pAM2770]
          Length = 183

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/178 (15%), Positives = 62/178 (34%), Gaps = 8/178 (4%)

Query: 165 KRKTEGI-RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223
           K    G  +  T +++++  S      + R+ F   L++G R S++       ++    +
Sbjct: 2   KVNGNGRAKILTSDELRRLFSDGFTTPRDRVLFGICLFTGCRVSEALALQTTDIKGETLT 61

Query: 224 IKTQKTGTII---TVELPDGFMKLLAMTPIGKETFFINNDK--QKMNATQFSIWFKAKAT 278
            +   T   +    V++  G   L+A       T F        ++         +  A 
Sbjct: 62  FRKSTTKGKLKTRVVDIQPGLAALMADYHPKPGTLFPGMRGVSDRLTRYAADKILRDAAK 121

Query: 279 KAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIK 334
           + G+   S H  R+ +    + AG     +    G   +   + Y +   ++ R  + 
Sbjct: 122 RIGLEGISTHSFRRTALNQMSSAGIPLRHIQEISGHNDLGTLQRYLEVTPEQRRKAVS 179


>gi|260769153|ref|ZP_05878086.1| hypothetical bacteriophage integrase [Vibrio furnissii CIP 102972]
 gi|260614491|gb|EEX39677.1| hypothetical bacteriophage integrase [Vibrio furnissii CIP 102972]
          Length = 322

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 53/320 (16%), Positives = 106/320 (33%), Gaps = 34/320 (10%)

Query: 13  KERTRHGKIIYYFRKGHGRRIRLPYPHESTFIP-AYMSALTGSTPKREYINSPRKKPTTL 71
           + + R+GK    +R+            ++ F    Y   +  +   +E++  P     TL
Sbjct: 15  RPQGRNGK---RYRRQ----------FDTKFEATQYEKHVLATAHDKEWLEKP-ADRRTL 60

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
             LI+ + K   +   +  +  ++      + ++ G     +IT K +     ++ +   
Sbjct: 61  SELIALWWK---YEGQSKKTAEAYLKEVKLVDKELGFPKAHQITHKLLADYRMAQLNKGR 117

Query: 132 SAIQFLTSMRVLFKW-----AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
           +   F   M  L        AV+ E+   +P    +    KT  +   + ++M    S  
Sbjct: 118 AMTTFNRKMNCLSNVFTALIAVK-EFHNPHPVSGFKLKVPKTREMAFLSVDEMNHLLSVL 176

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
           S  S      +  L +G R  ++       + +   +    K G   TV +       + 
Sbjct: 177 SGDSYK--VAKLCLATGARWGEAEELKGSTVSHGKVTFLDTKNGKDRTVPISQELQDEIV 234

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHE 306
               G+          K    +F +  K         ++AH +R   A+     G     
Sbjct: 235 TGKSGRLF--------KDCYAEFYVQLKQCNFDLPKGQAAHVLRHTFASHFMMNGGNILT 286

Query: 307 LMATYGWKTVDQAETYTKGA 326
           L    G  T+ Q  TY   A
Sbjct: 287 LQKILGHATIQQTMTYAHFA 306


>gi|170680409|ref|YP_001746252.1| phage integrase family site specific recombinase [Escherichia coli
           SMS-3-5]
 gi|213417372|ref|ZP_03350514.1| site-specific recombinase, phage integrase family protein
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E01-6750]
 gi|170518127|gb|ACB16305.1| site-specific recombinase, phage integrase family [Escherichia coli
           SMS-3-5]
          Length = 326

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 45/307 (14%), Positives = 101/307 (32%), Gaps = 23/307 (7%)

Query: 26  RKGHGRRIRLPYPHESTFI--PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAH 83
           R   G+RIR  +  ++  +    Y  A       ++     R    TL  L++ + K  H
Sbjct: 18  RGRDGKRIRRKFERKAEAVAFERYTIAYA----SQKEWAGQRADRRTLSELLNIWWK-YH 72

Query: 84  WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK---HIRSGVESRKHTPSSAIQFLTSM 140
             +    ++    ++  + I   GD    +++ +     RS       + ++  + +  +
Sbjct: 73  GQNHEHGTKEF--NHLLKTISGIGDIPVSRMSKRALMDYRSMRLRDGISAATINRDMYRL 130

Query: 141 RVLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199
             +F   ++  E+   +P   +         +    K ++++  +         L     
Sbjct: 131 SGMFTKLIQLDEFSGQHPIHGLPPLAEANPEMTFLEKAEIEKLLNVLD--GDDLLVALLC 188

Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN 259
           L +G R ++        + N   +    K G   TV + +   K +      K       
Sbjct: 189 LSTGGRWTEVATLKPAQITNCRVTFLKTKNGKKRTVPISEELEKKVKEEASAKLF----- 243

Query: 260 DKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
              K++  +F    +        N++ H +R   A+     G     L    G  ++ Q 
Sbjct: 244 ---KVDYEKFCGILRRVKPDIPPNQATHILRHTFASHFMMNGGNIIALQQILGHASIQQT 300

Query: 320 ETYTKGA 326
             Y   A
Sbjct: 301 MAYAHLA 307


>gi|76788652|ref|YP_329239.1| prophage LambdaSa03, site-specific recombinase phage integrase
           family protein [Streptococcus agalactiae A909]
 gi|76563709|gb|ABA46293.1| prophage LambdaSa03, site-specific recombinase, phage integrase
           family [Streptococcus agalactiae A909]
          Length = 380

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/302 (13%), Positives = 94/302 (31%), Gaps = 50/302 (16%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG-DFDYRKITTKHIRSGVESRKHT 129
              LI E+        +  +S ++ +    +I  + G +     I  +++++ +++   +
Sbjct: 65  FTNLIDEWWIFYQ-QEIKRSSIVTLKGNIREIRAEFGINIPVVNIDPRYVQNYLDNLDCS 123

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM---------Q 180
            +   +  + + ++F +AV  + +  NP    + PK K      W K +          +
Sbjct: 124 RNKKERNKSMLNLIFDYAVSLDIIKDNPARRAKLPKIKKTLND-WKKFEEKYLEEEEIKR 182

Query: 181 QFKSFWSEGSQPRLAF--EFLLYSGLRCSDSCRAGVQHLQ-------------NNIFSIK 225
             K  +   S  RL    EF+  +G R  ++      ++                   I 
Sbjct: 183 LLKELFRRPSTRRLGLLSEFMSLNGCRIGEAISIEPDNIDFKNKTLQLHGTYDRTNGYIN 242

Query: 226 TQKTGTII------------------TVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT 267
            +KT                       +E  +   K            F   +   +   
Sbjct: 243 GEKTSPKTLASYRETIMTKREMEIIQELEFINELEKNTNPRYRDMGYIFTTRNGVPIQIN 302

Query: 268 QFSIWFKAKATKAG--VNK--SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETY 322
            F++  K    +    +NK  ++H  R    +  A+       +M   G        + Y
Sbjct: 303 SFNLALKKANERLEQPINKNITSHIFRHTLVSRLAENNVPLKAIMDRVGHADAKTTVQIY 362

Query: 323 TK 324
           T 
Sbjct: 363 TH 364


>gi|315033105|gb|EFT45037.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0017]
          Length = 393

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 51/324 (15%), Positives = 99/324 (30%), Gaps = 60/324 (18%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132
           WL  EY+K+    +     R   +     I+   G     ++T K ++  V         
Sbjct: 77  WL-DEYKKTVRESTFIATERRMKK----HILPTFGKMRLERLTVKIVQKSVNEWYKKNEM 131

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR-----KTEGIRPWTKEDMQQFKSFWS 187
               L+    +  +AV  E +  NP   + +P       K    + +TK++++ F +   
Sbjct: 132 GKVLLSYASRVCDYAVGLEIIDSNPFKKITKPSSLKKVEKNTKRKFYTKDELEHFLNTAD 191

Query: 188 EGSQPR---------------LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT--- 229
             +                    F  L ++G+R  ++       +      +   KT   
Sbjct: 192 SIANQAKEESLVLKYYADLDCAIFRLLSFTGIRVGEALALNWNDIDIKEQVVNINKTTAI 251

Query: 230 ---GTIITVELPD----------------------GFMKLLAMTPIGKETFFINNDKQKM 264
              G  I                                L+       +  F   D    
Sbjct: 252 STNGLTINDPKTPNSIRKISFDNKTAYILKKWKLRQREALMKKGGFKTQLIFTKIDGTMF 311

Query: 265 NATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADA-GATAHELMATYGWKTVDQA-E 320
            +       K  A KA ++ S   HG R   AT+  ++    +  +    G  ++    +
Sbjct: 312 RSQDIYQRSKRLAEKANLH-SIGCHGFRHTHATLLFESDNVRSKIIQERLGHSSLQITMD 370

Query: 321 TYTKGADRIRLGIKNSRRISSVVD 344
           TYT  +D   +  + +   SS V+
Sbjct: 371 TYTHVSD--EVTKEATDAFSSYVN 392


>gi|271500920|ref|YP_003333945.1| integrase family protein [Dickeya dadantii Ech586]
 gi|270344475|gb|ACZ77240.1| integrase family protein [Dickeya dadantii Ech586]
          Length = 416

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/274 (14%), Positives = 92/274 (33%), Gaps = 20/274 (7%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH 128
           T   + +++ +      LA N+        +  +     +    ++T +H  + +E  + 
Sbjct: 106 TFAKVAADWYEVKKSQPLAANTIKDIWRSLEKYVFPFIANQPISQLTARHFITALEPIQA 165

Query: 129 TPS--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP---KRKTEGIRPWTKED--MQQ 181
           +    +  +    +  +  +AV    +  NP   + +      KT       +    + +
Sbjct: 166 SGKLETVKRVSQRINEVMDYAVNSGLIPANPAAKIRKAFQTPVKTHMPTIRPEALPGLMK 225

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIITVEL 237
             S  S   Q RL  E+ L +  R +++       L     +        K      + L
Sbjct: 226 TLSVASIELQTRLLIEWQLLTVARPAEAAETRWSELDLTENTWTIPAGRMKMRREHVIPL 285

Query: 238 PDGFMKLLAMTPI---GKETFFINN--DKQKMNATQFSIWFKAKATKAGVNKSAHGVRKF 292
           P   + +L         +E  F +    KQ MN+   +   +    K  +   +HG+R  
Sbjct: 286 PSQALAILDAMKPISGHREYLFPSAKDPKQPMNSQTANAALRRMGYKGVL--VSHGLRAI 343

Query: 293 SATISADAGATAHELMATYGWKTVDQAET-YTKG 325
            +T + +AG     + A       ++    Y + 
Sbjct: 344 FSTAANEAGFPPDVIEAALAHVDTNEVRRAYNRS 377


>gi|168187083|ref|ZP_02621718.1| integrase/recombinase [Clostridium botulinum C str. Eklund]
 gi|169294986|gb|EDS77119.1| integrase/recombinase [Clostridium botulinum C str. Eklund]
          Length = 329

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/287 (14%), Positives = 93/287 (32%), Gaps = 37/287 (12%)

Query: 74  LISEYRKSAHWGSLAVNSRISFES----YFDQIIRKSGDFDYRKITTKHIRSGVE---SR 126
           L+ E+ +       +  +  ++ S      +    K+ + ++  IT + +        ++
Sbjct: 26  LVEEFLEYCSSIDRSPMTIRNYRSDLRIIINWFKDKAKNKEFFDITKRDVIKFQNWCITQ 85

Query: 127 KHTPSSAIQFLTSMRVLFKW---AVRQEYVA-INPCLSVERPKRKT-EGIRPWTKEDMQ- 180
           + +P+   +  ++M  +  +    +  +Y    N    +  P           + E ++ 
Sbjct: 86  EMSPARIRRLRSAMSSMSNYIENMLDNDYPNFRNIINKIPAPNLSAVREKTVLSDEQVEF 145

Query: 181 QFKSFWSEGSQPRLAF-EFLLYSGLRCSDS--CRAGV----QHLQNNIF---SIKTQKTG 230
                   G   +  F   L  SG+R S+   C          +   ++    I+T+  G
Sbjct: 146 LIDELMKSGEIQKACFIAVLAGSGMRKSEIVQCDMSWYFGHPTIYEGMYVSPEIRTKGRG 205

Query: 231 TI--------ITVELPDGFMKLLAMTP---IGKETFFINNDKQKM---NATQFSIWFKAK 276
            +        I     D   +  A      I  E  F+    ++      +    W ++ 
Sbjct: 206 KMGKKLNKYTICAVADDYLKQWYAKRQELNIDCEALFVTKRNEQWERIKESTVDSWMQSF 265

Query: 277 ATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
               GV+  AH +R +SAT          ++    G      +E Y 
Sbjct: 266 TKILGVDCYAHCLRHYSATWLKKHSVNIDQIRDFMGHNDSSTSEIYV 312


>gi|319649469|ref|ZP_08003625.1| hypothetical protein HMPREF1013_00229 [Bacillus sp. 2_A_57_CT2]
 gi|317398631|gb|EFV79313.1| hypothetical protein HMPREF1013_00229 [Bacillus sp. 2_A_57_CT2]
          Length = 373

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 44/290 (15%), Positives = 100/290 (34%), Gaps = 38/290 (13%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           LK  ++E+ +       A  +  +   Y +  II   G++   ++T    +  + +    
Sbjct: 68  LKDWLTEWLEIYGAQC-AERTLFNRFWYINNHIIPSLGNYKMNQLTRIEYQKFINTLVEK 126

Query: 130 PSSAIQFLTSMRVLF----KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF-KS 184
              A + + ++  +F      AV  E V  N    +     + E I   ++++++ F  +
Sbjct: 127 -GYARKTIQTIHSIFCTAINKAVELEMVTHNKYQGISIKVEEEEKINYLSRDEVEIFMDA 185

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTII--------- 233
                    +    LL +G+R  +      + +   N   SI   ++   +         
Sbjct: 186 AKKSPYHHYIIASILLRTGMRKGEMLALKWEDIDFENKTISITKTRSDNGVKKPKTKSSN 245

Query: 234 -TVELPDGFMKLL-------------AMTPIGKETFFINN-DKQKMNATQFSIWFKAKAT 278
            T+ + +  +  L                   K  F +   + +++     +    +   
Sbjct: 246 RTIGIDNTLIADLKQYQLWQKKNKMKHGADYHKSEFLVRCPNGKEIGEYGVNKTIDSILK 305

Query: 279 KAGVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQ-AETYTK 324
           KA  N    S HG+R   A +  ++GA    +    G  T++  A+ Y  
Sbjct: 306 KANTNLPHISPHGLRHTHAIMLLESGADLKFVSERLGHSTINMTADVYVH 355


>gi|224542983|ref|ZP_03683522.1| hypothetical protein CATMIT_02177 [Catenibacterium mitsuokai DSM
           15897]
 gi|224524121|gb|EEF93226.1| hypothetical protein CATMIT_02177 [Catenibacterium mitsuokai DSM
           15897]
          Length = 281

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/283 (13%), Positives = 93/283 (32%), Gaps = 22/283 (7%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--TP 130
            ++SE+     +   A N+   +       +    D + +++    + +          P
Sbjct: 3   AVLSEFLNEMKYEEKAPNTVKQYRRACTNFLSSIEDKN-KEVKKDDVMAYKSKMLDEYKP 61

Query: 131 SSAIQFLTSMRVLFKWA----VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
           S+    +  +    ++     + +   +     ++ R +R +         ++++   + 
Sbjct: 62  STINVSIICINKFLRYCETESLERGQRSRMEVKTI-REQRVSSLEDVLEPGELKRLLKYS 120

Query: 187 SE--GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK- 243
                    L  +   Y+G+RC +      +++++ I   +T   G +  + L D   K 
Sbjct: 121 RRLGYDDIYLIIKIFAYTGIRCQELKDFTAENMKHTII--RTNSKGKVREIILRDDLKKE 178

Query: 244 ---LLAMTPIGKETFFINNDKQKM-NATQFSIWFKAKATKAGVNKS---AHGVRKFSATI 296
               +    I     F N+D   +          +  A  A VNK     H  R     +
Sbjct: 179 INQYMKRHGITGGYVFRNDDNDGLIPYQTIYRKLQKVAGAAKVNKRKVHPHSFRHLFGIV 238

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
               G    EL   YG  +++    Y +     ++  +   R+
Sbjct: 239 FMQQGGNIDELADIYGHSSLETTRIYLRTT--AKMKKEKMSRL 279


>gi|296454815|ref|YP_003661959.1| phage integrase family protein [Bifidobacterium longum subsp.
           longum JDM301]
 gi|296184247|gb|ADH01129.1| phage integrase family protein [Bifidobacterium longum subsp.
           longum JDM301]
          Length = 486

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 47/287 (16%), Positives = 85/287 (29%), Gaps = 49/287 (17%)

Query: 79  RKSAHWGSLAVNSRISF-ESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFL 137
           R+  +  +L  +++I + E   + +++  GD     I    ++   +S    P       
Sbjct: 99  RRKPNGEALESSTKIKYTEKLENHLLKPFGDKTVAAIKPDDVQKWWDSYGANPPQVRSDA 158

Query: 138 TSMRVLFKWAVRQE--------YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            +M          E         +  +PC       RK          +++       E 
Sbjct: 159 YTMLKSIMHTAETEPINEQGDTLIDRSPCRLRGTTVRKKHKTVTAELHEIKTVYEAMPE- 217

Query: 190 SQPRLAFEFLLYS--GLRCSDSCRAGVQHLQ-----------------NNIFSIKTQKTG 230
              RLA    L     LR  +        +                  +    I   KT 
Sbjct: 218 ---RLALSIYLGGVMSLRIGEVLALRRGDVDLTKNVLHVAGSVKPAMKDGKQVIVRGKTK 274

Query: 231 TI---ITVELPDGFM-----KLLAMTPIGKETFFINNDKQK-MNATQFSIWFKAKATKAG 281
           T      +++P+         L   T  GK        K   M    FS +++    +A 
Sbjct: 275 TANSDRYIDIPEALRPIFAEHLRYHTGRGKAALLFEAKKSGVMRENVFSYYWRQA--RAT 332

Query: 282 VNK------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           V +        H +R  +     + GAT + +MA  G   +  A  Y
Sbjct: 333 VPRLREGEMKFHDLRHTALQHLVENGATLNMVMAVAGHSDIKVAGKY 379


>gi|291514510|emb|CBK63720.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
 gi|313157429|gb|EFR56850.1| site-specific recombinase, phage integrase family [Alistipes sp.
           HGB5]
          Length = 404

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 46/317 (14%), Positives = 105/317 (33%), Gaps = 37/317 (11%)

Query: 34  RLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKS-----AHWGSLA 88
           R+   ++  F+      L+    K  ++       TTL  +  EY++          SL+
Sbjct: 74  RIRTTYQEMFLRG--PVLSAEQVKNAFLGIDDSS-TTLLSVFQEYKQHQKDMIGKCRSLS 130

Query: 89  VNSRI---SFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL 143
              +     +    D I  K    D    +I    +    +    T   +   +  +  +
Sbjct: 131 -TYKRITLVYNRVADFIKVKHHRSDMYAAEIDGSFVDDFSDYLFTTYKVSNNQVQKIMQV 189

Query: 144 FKW----AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ-----QFKSFWSEGSQPRL 194
           FK      +++  +  +P    +  K         T ++++     +F     E ++   
Sbjct: 190 FKHVTKICIKKGLLKKDPFSDYK-IKFDPVDPNFLTVDELKLIIQKKFSLRSLETTKDL- 247

Query: 195 AFEFLLYSGLRCSDSCRAGVQHL-----QNNIFSIKTQKTGTIITVELPDGFMKLLAMTP 249
            F F  ++GL   D+     +++      +    I  QKT     + + D    ++    
Sbjct: 248 -FVFSCFTGLAFVDAMNLKRENITLAENGDMWIKITRQKTNIPSIIPVMDIAKSIIKKYE 306

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHEL 307
              +++ +     +      + + K  A+  G+ K  + H  R   AT +   G     +
Sbjct: 307 NQNDSYVL----PRSPHQHVNAYLKQIASSCGIKKNMTFHMARHTYATTAMSFGVPIATI 362

Query: 308 MATYGWKTVDQAETYTK 324
             T G   +   + Y +
Sbjct: 363 AKTMGHANMKMTQHYAR 379


>gi|228925131|ref|ZP_04088241.1| Phage integrase [Bacillus thuringiensis serovar huazhongensis BGSC
           4BD1]
 gi|228834470|gb|EEM79999.1| Phage integrase [Bacillus thuringiensis serovar huazhongensis BGSC
           4BD1]
          Length = 360

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/277 (14%), Positives = 81/277 (29%), Gaps = 31/277 (11%)

Query: 85  GSLAVNSRISF----ESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSM 140
              +  ++  +      +   I    G           I     S+K+  ++  +  T +
Sbjct: 72  KKRSERTKQQYLHDLSHFLRYIKETIGTIQELSHNEMEIYFYELSKKYASTTLRKKKTVV 131

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEG--IRPWTKEDMQQFKSFWSEGSQ-PRLAFE 197
           +   K+      ++ N    +++   K E    R    E++ Q      + +     AF 
Sbjct: 132 QQFLKYVYDNNGLSDNFSSRLKKVSVKKEELVNRDLYPEEVTQILDELKKSNYFVYTAFF 191

Query: 198 FLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIIT-VELPDGFMKLLAMT---- 248
            L  +GLR  +   A    L      N + ++    G  I  V + +  +  +       
Sbjct: 192 LLTTTGLRIEEIATAKWADLVFHSSLNAYLLRVVGKGNKIREVRIFEDTLDAICHVRRLR 251

Query: 249 -------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--------KSAHGVRKFS 293
                        F    D     A   S     K  +  +          + H  R F 
Sbjct: 252 KQTTELDASSSSAFLPKADGSNYRADYLSSLVAKKIEETNLAFLRYRQDRITPHTCRHFM 311

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
           A    + G    ++    G +++   E Y +   R +
Sbjct: 312 ANYLMEKGVELKKIRDYLGHESIMTTERYLRERTRRQ 348


>gi|327482055|gb|AEA85365.1| conserved hypothetical protein [Pseudomonas stutzeri DSM 4166]
          Length = 813

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 47/330 (14%), Positives = 94/330 (28%), Gaps = 79/330 (23%)

Query: 70  TLKWLISEYR----KSAHWGSLAVNSRISFESYFDQIIRKSG-DFDYRKITTKHIRSGVE 124
           +L  L+ EY     +   W +    +RI+ ++  + +    G       +T     +  +
Sbjct: 422 SLAALVKEYEERQIREGAWAN--PRTRITAKARLEGLCELLGGHRQVETLTRAEFNTLRD 479

Query: 125 SRKH----------------------------TPSSAIQFLTSMRVLFKWAVRQEYVAIN 156
             +                              P +A +F    R L  +A  Q Y+  N
Sbjct: 480 HLRSYPKNRHRLRATRNQPLSKIISDGKFEPINPRTAKKFFELARALVTYAHDQGYITEN 539

Query: 157 PCLSVERPKRKTEGI--RPWTKEDMQQFKS--FWSEGSQPRLAFE--------FLLYSGL 204
               +    +  E    R ++   +++      ++  + PR   +          L++G 
Sbjct: 540 IAAGLAFSTKGAEAPRKRTYSPSQIEKLLHGPAYTLTTPPRWRLDDYKFWLPLLGLFTGA 599

Query: 205 RCSDSCRAGVQHLQNNIFSI---------KTQKT-GTIITVELPDGF----------MKL 244
           R S+ C+  ++ ++  +            K  KT  +   V +               +L
Sbjct: 600 RLSELCQLRLEDIRQELGVWLISINRSGSKQLKTSDSERLVPIHRQLIESGFLEFHQARL 659

Query: 245 LAMTPIGKETFF--INNDKQKMNATQFSIWF-------KAKATKAGV---NKSAHGVRKF 292
            A+   GK   F  I            S WF       +      G+     + HG+R  
Sbjct: 660 EAVERDGKAPLFDNIRVYGDLSPGHVASRWFLGSSQISRGYLGLCGLGDDGLTYHGLRHT 719

Query: 293 SATISADAGATAHELMATYGWKTVDQAETY 322
                        +  A  G         Y
Sbjct: 720 FINQFRRQNLDLAKAKALVGHSDKSTTGGY 749


>gi|323479615|gb|ADX79054.1| phage integrase family protein [Enterococcus faecalis 62]
          Length = 389

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 43/299 (14%), Positives = 91/299 (30%), Gaps = 46/299 (15%)

Query: 85  GSLAVNSRISFESYF-DQIIRKS--GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS-- 139
             +A N+ + ++ Y  ++I +          ++   H++   +   +   +A   +    
Sbjct: 86  KQVAFNTYVGYKHYVHNRIYKFFYPKKIKLNRLKPYHLQDFYQYMLNDDCTANTVIHYHA 145

Query: 140 -MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEF 198
            +R   + AV  E ++ N    V +PK+K    + + + ++ +     SE  +  L    
Sbjct: 146 FIRKALQEAVITELISTNVADKVRKPKKKQFVSQVYNQHEILKLLDILSE-EKLYLVVLL 204

Query: 199 LLYSGLRCSDSCRAGVQHLQ-------------------NNIFSIKTQKTGTI-ITVELP 238
             + GLR S+        +                    + +      K  +   T+ L 
Sbjct: 205 TAFYGLRRSEVLGLKWSAIDFLNKKIMINHVIIENPENMSQLIKKDQTKNSSSYRTLPLV 264

Query: 239 DGFMKLLAMTP----------------IGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
           +   + L                       E  F   D + M     +        K G+
Sbjct: 265 ETIERALVNQAKWQQDNRILLGEDYILKDSEYVFTMEDGRLMKPQYVTHRLSKLIKKNGL 324

Query: 283 NK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTK-GADRIRLGIKNSRR 338
            K   H +R  +A+I  D+G     +    G  +       YT   A       +    
Sbjct: 325 KKIRFHDLRHSNASIMLDSGENMKSIQEWLGHASYSTTANLYTHLTAGVKERAAEALEN 383


>gi|153813131|ref|ZP_01965799.1| hypothetical protein RUMOBE_03539 [Ruminococcus obeum ATCC 29174]
 gi|149830786|gb|EDM85876.1| hypothetical protein RUMOBE_03539 [Ruminococcus obeum ATCC 29174]
          Length = 444

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 43/332 (12%), Positives = 100/332 (30%), Gaps = 65/332 (19%)

Query: 56  PKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--DYRK 113
               ++        TL  L  E+       + + N+    E ++++  + +  F      
Sbjct: 72  ALAPFLTVEIGNDMTLTDLYPEWLDYKSQLTNSPNTIAVHEKHWNKYFKDTSLFLKPIST 131

Query: 114 ITTKHIRSGVESRKHTP---SSAIQFLTSM-RVLFKWAVRQEYVAINPCLSVE------R 163
           IT K +     +        S   Q + ++ + +F++A   EY+  N    ++      +
Sbjct: 132 ITLKDLNLWANALIKKWDLSSKQWQTIKTIPKQIFEYAYMSEYIQHNSFPEIKITVKFRQ 191

Query: 164 PKRKTEGIRPWTKEDMQQ-----FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218
             +K+   + +  E+ ++     + SF  +G +  LA     Y GLR  +        + 
Sbjct: 192 VIKKSGETQTYNSEEFEKILQDLYSSFQEKGEKRFLAIILNFYLGLRAGELAALQWGDIV 251

Query: 219 NNIFSIKTQ------------------------------------------KTGTIITVE 236
            N   I+ +                                          KT     V 
Sbjct: 252 ENHIHIQREMVCINSRDLEIDAFQAQIRTGELELLPNPKNNKNIYAITNHTKTHKERYVP 311

Query: 237 LPDGFMKLLAMTPI-----GKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVR 290
           +      ++ +            +    + + M     +   +       ++ K +H +R
Sbjct: 312 IISQAANVIQILKKLSPCHKASDYIFYENGKYMTLRSINSMLERACDHIDIDTKRSHIIR 371

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETY 322
           K  A+  A +G     + +  G   +     Y
Sbjct: 372 KTYASRLAASGYPVDAIRSNLGHSNLATTYGY 403


>gi|5824355|emb|CAB54522.1| Int protein [Enterobacteria phage WPhi]
          Length = 326

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 46/307 (14%), Positives = 101/307 (32%), Gaps = 23/307 (7%)

Query: 26  RKGHGRRIRLPYPHESTFI--PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAH 83
           R   G+RIR  +  ++  +    Y  A       ++     R    TL  L+  + K  H
Sbjct: 18  RGRDGKRIRRKFERKAEAVAFERYTIAYA----SQKEWAGQRADRRTLSELLDIWWK-YH 72

Query: 84  WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK---HIRSGVESRKHTPSSAIQFLTSM 140
             +    ++    +Y  + I   GD    +++ +     RS       + ++  + +  +
Sbjct: 73  GQNHEHGTKEF--NYLLKTISGIGDIPVSRMSKRALMDYRSMRLRDGISAATINRDMYRL 130

Query: 141 RVLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199
             +F   ++  E+   +P   +         +    K ++++  +  +      L     
Sbjct: 131 SGMFTKLIQLDEFSGQHPIHGLPPLAEANPEMTFLEKAEIEKLLNVLA--GDDLLVALLC 188

Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN 259
           L +G R ++        + N   +    K G   TV + +   K +      K       
Sbjct: 189 LSTGGRWTEVATLKPAQITNCRVTFLKTKNGKKRTVPISEELEKKVKEEASAKLF----- 243

Query: 260 DKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
              K++  +F    +        N++ H +R   A+     G     L    G  ++ Q 
Sbjct: 244 ---KVDYEKFCGILRRVKPDIPPNQATHILRHTFASHFMMNGGNIIALQQILGHASIQQT 300

Query: 320 ETYTKGA 326
             Y   A
Sbjct: 301 MAYAHLA 307


>gi|17546374|ref|NP_519776.1| integrase/recombinase protein [Ralstonia solanacearum GMI1000]
 gi|17428671|emb|CAD15357.1| probable integrase/recombinase protein [Ralstonia solanacearum
           GMI1000]
          Length = 334

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 46/297 (15%), Positives = 100/297 (33%), Gaps = 35/297 (11%)

Query: 50  ALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI----IRK 105
           A+      R        K  T+  ++ EY+KS     ++  ++        ++     ++
Sbjct: 36  AVRREAELRSIQGGQGSKTHTVGDVLDEYQKS-----VSP-TKRGSRWEILRLDLIGRKR 89

Query: 106 SGDFDYRKIT-----TKHIRSGVESRKH--TPSSAIQFLTSMRVLFKWA-VRQEYVAINP 157
                +R+I       +HI +  + R      SS  + ++ +    + A     ++  +P
Sbjct: 90  IEGKPFREIRLADLRPQHIAAWRDVRAREVAGSSVSREMSLLSHALEVARKEWGWLVTDP 149

Query: 158 CLSVERPKRKTEGIRPWTKEDMQQF---------KSFWSEGSQPRLAFEFLLYSGLRCSD 208
              V RP       R  +  ++++          K       +  +AF   + + +R  +
Sbjct: 150 MKDVRRPPDNPPRQRLVSDNEIERITLALGYQEGKPVALPSQRIAVAFLLAIETAMRSGE 209

Query: 209 SCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA 266
                         +  +   K G    V L    ++LL M P  +    + +    ++A
Sbjct: 210 ILGLTSSTVDYNRRVAHLPLTKNGGARDVPLSTRAVELLRMLPAVE----VGDPLLGLSA 265

Query: 267 TQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
                 F+    KAG+ + + H  R  + T  A       +L    G   + +  TY
Sbjct: 266 ASRDALFRKAKEKAGIADLTFHDTRHEAITRLAKK-LQPLDLARMTGHTNLQELMTY 321


>gi|119025957|ref|YP_909802.1| phage integrase [Bifidobacterium adolescentis ATCC 15703]
 gi|118765541|dbj|BAF39720.1| phage integrase [Bifidobacterium adolescentis ATCC 15703]
          Length = 435

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 43/321 (13%), Positives = 90/321 (28%), Gaps = 50/321 (15%)

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSG--- 122
           +P T+   +  +        L   +  ++ S   + I+   G     ++   H R     
Sbjct: 112 RPPTVAEWMDHWLTDVCKPRLKPRTWGTYASVIANNIVPSIGAVRLDELKPAHFRRMERY 171

Query: 123 -VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
            ++ +  +  +A     ++    + AV +  +  NP +    P+   +     T E    
Sbjct: 172 VMDEQGKSSGTAGSAWRTLHKALEDAVLEGVIERNPAVKGTAPRVALKERAALTPEQAAD 231

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----------------------- 218
             +  ++ +  RL +     +G+R  +        L+                       
Sbjct: 232 LIAAETDDTW-RLMWMLAFMTGMRQGERLGLTEDELRRDGDRLIILVEWQAQHLTKREVE 290

Query: 219 ------------NNIFSIKTQKTGTIITVELPDGFMKLLAMTP-----IGKETFFINNDK 261
                       N ++  + +       + LP+     L          G    F ++  
Sbjct: 291 GLPKGVECTPLGNGMYRTRPKTEKGRRAIPLPEALADQLLAYIERHGVNGDGLVFHDDRG 350

Query: 262 QKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
             +        +     + G+      H  R  +ATI    G       A  G   V   
Sbjct: 351 LPLTGCVERRRWYRALDRVGLGHEYVPHSARHTTATILNRLGLDDVTRTAIMGHSRVSTT 410

Query: 320 -ETYTK-GADRIRLGIKNSRR 338
            E YT    DR+        R
Sbjct: 411 NEIYTHVELDRLVAATDGVER 431


>gi|326566337|gb|EGE16487.1| phage integrase [Moraxella catarrhalis BC1]
          Length = 397

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 47/269 (17%), Positives = 94/269 (34%), Gaps = 36/269 (13%)

Query: 84  WGSLAVNSRI---SFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH-TPSSAIQFLT 138
           +   AV ++      +  F+  +    G      IT +     +ES    TP  A + LT
Sbjct: 107 YDKSAVITKKQASDIKRSFELYVFPVIGSLPINDITLQQYIIIIESISEKTPGIAERILT 166

Query: 139 SMRVLFKWAVRQEYVAINPCLSVE-------RPKRKTEGIRPWTKEDMQQFKSFW---SE 188
           + + + KWA ++E V  N    +E       R KRK    R  + +++  F         
Sbjct: 167 NTKQMLKWAKKREIVTHNILADLELSDFNLVRVKRK----RYLSDDEIILFYKALYGSKI 222

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK------TGTIITVELPDGFM 242
             + RLA E  L  G R  +  RA +   Q+ ++++  +       T   +   +     
Sbjct: 223 SYRNRLATELALMFGCRGIELRRAKITDFQDGVWTVPPENHKVGHITQQPLIRPILPPMQ 282

Query: 243 KLLA-MTPIGKETFFINNDKQKMNATQFS-------IWFKAKATKAGVNKSAHGVRKFSA 294
            L+     I +  +  +   + +    F         W     +      + H +R+ + 
Sbjct: 283 ALIDEAIAISRSEYLFDRRGEMLEKNAFLDITTGLIHWIDRHCSIQLPRFTFHDLRRTAR 342

Query: 295 TISADAGATAHELMATY-GWKTVDQAETY 322
           T  +    T+ ++     G    +  + Y
Sbjct: 343 TNFSA--FTSRDIAEIMIGHTVGNMQQVY 369


>gi|325956998|ref|YP_004292410.1| integrase [Lactobacillus acidophilus 30SC]
 gi|325333563|gb|ADZ07471.1| integrase [Lactobacillus acidophilus 30SC]
          Length = 373

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/279 (12%), Positives = 85/279 (30%), Gaps = 27/279 (9%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE--SRKH 128
               + ++ ++    + +  +   +    + +    GD   + IT    +  +   ++KH
Sbjct: 70  FADYMQKWFETYKKPNCSPATSTKYNYEINLVRNYFGDLTIKDITRTKYQEFINFTAKKH 129

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP--WTKEDMQQF---- 182
            P +  +   S+R     A+    ++ +    V+    K + +       E++++     
Sbjct: 130 APVTVKKLNGSVRACVNSAIIDGLISADFTKQVQVHGNKDKELAVTYLNIEEIKRLTQTT 189

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK-----TQK------- 228
            S        R      +++G R  +        +   NNI  I       +K       
Sbjct: 190 ISNLDITIPSRYMVLTAIFTGARLGEISGLQWNDIDFANNIIDINKSWNWQRKRMGPTKN 249

Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ---KMNATQFSIWFKAKATKAGVNKS 285
             +I  +++ D  ++ L         F   N  +      +   +   ++    A +NK 
Sbjct: 250 KSSIRKIKVNDFLLERLNDLRANNCKFVFGNPAENNLPPTSATANSTLRSLLKDANINKD 309

Query: 286 A--HGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
              H +R                +    G   V     Y
Sbjct: 310 IHFHSLRHIHVAYLIKKHVDIVAISQRLGHSNVATTLKY 348


>gi|313149988|ref|ZP_07812181.1| integrase [Bacteroides fragilis 3_1_12]
 gi|313138755|gb|EFR56115.1| integrase [Bacteroides fragilis 3_1_12]
          Length = 396

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 46/272 (16%), Positives = 98/272 (36%), Gaps = 29/272 (10%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQ------IIRKSGDFDYRKITTK---HIRSGVESR 126
            +Y K    G  A  + + + + +        I     D   +++T          + + 
Sbjct: 103 EDYEKQVEAGMKAKGTLLKYRTVYKHMQEFLDIRYHVKDIALKELTPAFISDFEMFLRTD 162

Query: 127 KHTPSSAIQFLTS-MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           KH  ++ +      +R +   A+  E++  +P    E  K +T      TK++++     
Sbjct: 163 KHCCTNTVWLYVCPLRTMVFIAINNEWLTRDPFREYEIKKEETT-RSFLTKDEIRLLMEG 221

Query: 186 WSEGSQPRLAFEFLLY---SGLRCSDSCRAGVQHLQN-----NIFSIKTQKTGTIITVEL 237
             + ++  L  +  L+   +GL  +D      ++++         +I  QKTG +  + L
Sbjct: 222 KLKNAKQELYRDLYLFCAFTGLSFADMRNLTEENIRTYFDEHEWININRQKTGVVSNIRL 281

Query: 238 PDGFMKLL--AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFS 293
            D   +++       G    F                 +A A + G+ K  + H  R  +
Sbjct: 282 LDIANRIIGKYRGLCGDGRIFPVPH-----YNTCLAGIRAVAKRCGITKHITWHQSRHTA 336

Query: 294 AT-ISADAGATAHELMATYGWKTVDQAETYTK 324
           AT I    G     + +  G K++   + Y K
Sbjct: 337 ATTIFLSNGVPIETVSSMLGHKSIKTTQIYAK 368


>gi|255034688|ref|YP_003085309.1| integrase family protein [Dyadobacter fermentans DSM 18053]
 gi|254947444|gb|ACT92144.1| integrase family protein [Dyadobacter fermentans DSM 18053]
          Length = 436

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/281 (14%), Positives = 89/281 (31%), Gaps = 34/281 (12%)

Query: 75  ISEYRKSAHWGSLAVNSRISFE---SYFDQIIR---KSGDFDYRKIT---TKHIRSGVES 125
           I ++      G  + N+   +     +    I+   K+ D ++ +++    + +   +  
Sbjct: 131 IEKFELMVERGMRSDNTLRHWRKLKRHVTAFIKFQYKASDLNFSELSGLFAEELYEYLTL 190

Query: 126 RKHTPSS---AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
            K  P +   A + +   R + K  V+++++  NP    +      E I P   E +++ 
Sbjct: 191 HKPKPLAEVSARKDVKWTRQIVKIGVKKDFITRNPMEGFKCSGGDVEVI-PLEFEQVERI 249

Query: 183 --KSFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHL------QNNIFSIKTQKTGTII 233
             K    E     R AF F  ++G    D        +      +      K  KT    
Sbjct: 250 HRKKLHVERLVEVRDAFIFQCFTGFAYQDIYGLTRDSITLVGPKRERWLVRKRGKTQVGE 309

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDK-----QKMNATQFSIWFKAKATKAGVNKSA-- 286
            V +     +L+         + + +DK            +            +  S   
Sbjct: 310 MVPILPIVEELIQ--KYKSHPYCVAHDKLIPVNSNFRYNTYLKELADICDIRDITGSIRK 367

Query: 287 ---HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              H  R F A +  + G    ++    G + +     Y +
Sbjct: 368 LDTHDARHFFADMMLNNGVPLEDVSKMLGHRNIRTTMRYCR 408


>gi|168464132|ref|ZP_02698049.1| phage integrase family protein [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|194442793|ref|YP_002041998.1| phage integrase family protein [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194401456|gb|ACF61678.1| phage integrase family protein [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|195633508|gb|EDX51922.1| phage integrase family protein [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
          Length = 397

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 57/342 (16%), Positives = 115/342 (33%), Gaps = 39/342 (11%)

Query: 19  GKIIYYFRK-----------GHGRRIRLPYPHESTFIPAYMSALT-GSTPKREYINSPRK 66
           GK ++ FR            G G    L           Y++ L  G  P+ +      +
Sbjct: 39  GKKLWRFRYQRPATKQRTMMGLGAFPALSLADARGLRADYLALLANGIDPQIQAEVVEEQ 98

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNS------RISFESYFDQIIRKSGDFDYRKITTKHIR 120
           +   L  + S    +A+W  L   S      +  + S    +    G+   ++I  + + 
Sbjct: 99  QQIALDSIFST--VAANWFQLKSKSVTPDYAKDIWRSLEKDVFPAIGEIPVQQIKARILV 156

Query: 121 SGVESRKHTPS--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP--KRKTEGIRPWTK 176
             +E  K   +  +  + +  +  +  +AV    +  NP   +     K K + +     
Sbjct: 157 EALEPIKARGALETVRRLVQRINEIMIYAVNTGLIDANPASGIGMAFEKPKKQNMPTLRP 216

Query: 177 EDMQQFKSFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKT 229
           E++ +        +     R   E+ L + +R S++  A    +              K 
Sbjct: 217 EELPKLMRSLVMSNLSVPTRCLIEWQLLTLVRPSEASGARWAEIDLYAKLWTIPAERMKA 276

Query: 230 GTIITVELPDGFMKLLAMTP---IGKETFFI--NNDKQKMNATQFSIWFKAKATKAGVNK 284
                V L    +++L +       +E  F   N+ KQ MN+   +   K      G   
Sbjct: 277 KREHIVPLSPQALEILEVMKPISAHREHVFPSRNDPKQPMNSQTANAALKRIGY--GGKL 334

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAET-YTKG 325
            AHG+R  ++T   +AG  +  + A       ++    Y + 
Sbjct: 335 VAHGLRAIASTAMNEAGLNSDVIEAALAHIEKNEVRRAYNRS 376


>gi|298383495|ref|ZP_06993056.1| integrase [Bacteroides sp. 1_1_14]
 gi|298263099|gb|EFI05962.1| integrase [Bacteroides sp. 1_1_14]
          Length = 411

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 47/272 (17%), Positives = 96/272 (35%), Gaps = 29/272 (10%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQ------IIRKSGDFDYRKITTK---HIRSGVESR 126
            +Y K    G  A  +   +   +        I     D   +++T          + + 
Sbjct: 118 EDYEKQVEAGMKAKGTLEKYRIVYKHLQEFLDIRYHVKDIALKELTPAFISDFEMFLRTD 177

Query: 127 KHTPSSAIQFLTS-MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           KH  ++ +      +R +   A+  E++  +P    E  K +T      TKE+++     
Sbjct: 178 KHCCTNTVWLYVCPLRTMVFIAINNEWLTRDPFREYEIKKEETT-RSFLTKEEIRLLMEG 236

Query: 186 WSEGSQPRLAFEFLLY---SGLRCSDSCRAGVQHLQN-----NIFSIKTQKTGTIITVEL 237
             + ++  L  +  L+   +GL  SD      ++++         +I  QKTG +  + L
Sbjct: 237 KLKNAKQELYRDLYLFCAFTGLSFSDMRNLTEENIRTYFDEHEWININRQKTGVVSNIRL 296

Query: 238 PDGFMKLL--AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFS 293
            D   +++       G    F                 +A A + G+ K  + H  R  +
Sbjct: 297 LDIANRIIGKYRGLCGDGRIFPVPH-----YNTCLAGIRAVAKRCGITKHITWHQSRHTA 351

Query: 294 AT-ISADAGATAHELMATYGWKTVDQAETYTK 324
           AT +    G     + +  G K++   + Y K
Sbjct: 352 ATTVFLSNGVPIETVSSMLGHKSIKTTQIYAK 383


>gi|325680238|ref|ZP_08159800.1| type I restriction modification DNA specificity domain protein
           [Ruminococcus albus 8]
 gi|324108055|gb|EGC02309.1| type I restriction modification DNA specificity domain protein
           [Ruminococcus albus 8]
          Length = 528

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/295 (12%), Positives = 91/295 (30%), Gaps = 30/295 (10%)

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK 113
             PK + I +  K  T       ++      GS+   +   +    + + +   D     
Sbjct: 211 EPPKEDKILNDIKTDTLFHEYYCQWLVIYKEGSVRGVTMQKYHLTAEWVKKLIPDVKLCD 270

Query: 114 ITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV----ERPKRK 167
                 +  +     T    + + F   ++     AV    +A +P   V    + P  K
Sbjct: 271 FDRITYQQLINDYAETHERQTTMDFHHQLKGAILDAVDDGLIARDPTRKVIIKGKSPNDK 330

Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQ------- 218
            +     ++ ++Q+  +     S   + +  LL   +G+R S++                
Sbjct: 331 KKKY--LSRYELQKLLTSLDLNSGLNMDWLILLIAKTGMRFSEAIAVTPADFDFTHQTLS 388

Query: 219 -------NNIFSIKTQKTGTIITVELPDGFMK----LLAMTPIGKETFFINNDKQKMNAT 267
                        +  K  + +     D         +          F++ +K+  N+T
Sbjct: 389 VNKTWDYKGEGGFQPTKNKSSVRKIRLDWQTVGQFYAIVRELNDTAPIFVSKEKKIYNST 448

Query: 268 QFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
             +   +      G+   S HG+R   A++    G +   +    G  +++  + 
Sbjct: 449 -LNDVLERHCKAVGIPTISVHGLRHTHASLLLFDGVSIASVAQRLGHSSINTTQK 502


>gi|329117566|ref|ZP_08246283.1| site-specific recombinase, phage integrase family [Streptococcus
           parauberis NCFD 2020]
 gi|326907971|gb|EGE54885.1| site-specific recombinase, phage integrase family [Streptococcus
           parauberis NCFD 2020]
          Length = 377

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 44/274 (16%), Positives = 84/274 (30%), Gaps = 43/274 (15%)

Query: 94  SFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP-----------SSAIQFLTSMRV 142
              +Y   I       D +K+T +HI    ES K              ++  + +  ++ 
Sbjct: 87  QRNNYDRHIKTYFQQVDMKKLTYEHIYRFRESLKEKSTKQNSEEKLSNNTINKIMILVKK 146

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR-LAFEFLLY 201
           +F   +R E +  NPC ++ +   K   +  W  E+  +FKS  +E      L F    +
Sbjct: 147 MFDSGIRNELITKNPCQNLRKLPIKKPELNFWGIEEYLKFKSLITEDEYQYNLFFTLAYF 206

Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKTQK-------------TGTII---TVELPDGFMKLL 245
           +G+R  +        +     +I   K             T T      + L    +  L
Sbjct: 207 TGMRMGEILALTWNDINFYTSTIHVTKSVYYVHKTNHVNSTKTRAGTRYITLNQKLLNTL 266

Query: 246 AMTPIGKETFF--INNDKQKM----------NATQFSIWFKAKATKA-GVNK-SAHGVRK 291
                 +        N  Q +                  FK    +   +     H  R 
Sbjct: 267 KEWKNKQGEILSQFTNSTQNLQVIQSTPVTVTKNMIDKKFKQILQRDPNLKTIRIHDFRH 326

Query: 292 FSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
             A++  + G     +    G  ++    +TY+ 
Sbjct: 327 SHASLLINQGEDYLVVKERLGHASITTTIDTYSH 360


>gi|313105649|ref|ZP_07791913.1| hypothetical protein PA39016_000100009 [Pseudomonas aeruginosa
           39016]
 gi|310878415|gb|EFQ37009.1| hypothetical protein PA39016_000100009 [Pseudomonas aeruginosa
           39016]
          Length = 375

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/298 (13%), Positives = 98/298 (32%), Gaps = 35/298 (11%)

Query: 57  KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKIT 115
            R    +P     T+   +  + +S     ++ ++   +    + +++   G      + 
Sbjct: 49  PRAAKFAPEASRETVAGFLGRWLESKR-KHVSSSTFEGYRKIVELRLVPALGSAMVVDLK 107

Query: 116 TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS---VERPKRKTEGIR 172
            K ++  +++ K +  +     + +R     A+ +E +  NP        + + K + + 
Sbjct: 108 RKAVKDWLDTLKVSNKTLSNIQSCLRSALSDAMEEELIDSNPLAGWTYARKGEVKVDDVD 167

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK---- 228
           P++ E+ Q   S      Q R   +F  ++G+R S+        +      ++  +    
Sbjct: 168 PFSPEEQQAILSSLD--GQGRNLVQFAFWTGMRTSELVGLEWGDIDWLRGEVRVTRAMTQ 225

Query: 229 -----------TGTIITVELPDGFMKLLAMTPIGKETFFINND-------KQKMNATQ-- 268
                      T    +++L    ++ L        T+  N +        ++       
Sbjct: 226 AAKGKAEVTKTTSGRRSIKLLGPALEALKAQK--AFTYLANQEVFQNPRTGERWAGDGPI 283

Query: 269 FSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQ-AETYTK 324
               +     KAGV  +  +  R   A++   AG     +    G       A  Y +
Sbjct: 284 RKTLWMYALKKAGVRYRRPYQTRHTYASMMLSAGEHPMWVAQQMGHSDWTMIARIYGR 341


>gi|308180893|ref|YP_003925021.1| prophage Lp2 protein 2, integrase [Lactobacillus plantarum subsp.
           plantarum ST-III]
 gi|308046384|gb|ADN98927.1| prophage Lp2 protein 2, integrase [Lactobacillus plantarum subsp.
           plantarum ST-III]
          Length = 387

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 46/357 (12%), Positives = 103/357 (28%), Gaps = 55/357 (15%)

Query: 41  STFIPAYMSALTGSTPKREYINSPRKKPTT---LKWLISEYRKSAHWGSLAVNSRISFES 97
           S F     +    +  ++   +    K  T         ++ ++  +G ++  +   +  
Sbjct: 30  SGFSRKKEAEQWATKLEQAKFDQSIGKTDTTTVFTDYYEKWLETYKFGKVSRITEQEYRY 89

Query: 98  YFDQIIRKSGDFDYRKITTKHIR-----------SGVESRKHTPSSAIQFLTSMRVLFKW 146
              QI     +     +T    +                R+ T +      +S+  L   
Sbjct: 90  TLRQIAELLPNVQLSSMTRLRYQQFINEFVHGNAKQRAQRQLTDNQPYHSKSSVEKLHGH 149

Query: 147 -------AVRQEYVAINPCLSVERPKRKTEG--IRPWTKEDMQQFKSFWSEG----SQPR 193
                  AV    +  + CL VE      +   ++    +DMQ   +  ++     S  +
Sbjct: 150 IHAAIIDAVADNLIKTDFCLHVELGGHSGKPAQLKYLNAKDMQTLAAEVNKNIKLISTGK 209

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII---------------TVELP 238
                 L +G+R ++        +     +I+  K+   +               T+ + 
Sbjct: 210 SMIYTGLLTGMRVAEVSALTWTDIDWQNKTIRVNKSWDYVYGQKFKKTKTESSIRTITVT 269

Query: 239 DGFMKLLAMTPI---------GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHG 288
           D  +  L                   F+N   +  +        K  +   G+ + S HG
Sbjct: 270 DDLLNHLKTLHALQMAAKLDNPDHLVFMNKRGRIPSPGACDNLLKKYSDSLGIKRISFHG 329

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAE-TYTK--GADRIRLGIKNSRRISSV 342
           +R   A+     G     +    G K        Y      D+ +   +  + +S V
Sbjct: 330 LRHTHASYLLYCGVKMEYISKRLGHKNSSITRNVYAHMIKEDQRQEDKRTLKALSQV 386


>gi|326561998|gb|EGE12328.1| phage integrase [Moraxella catarrhalis 103P14B1]
 gi|326574492|gb|EGE24434.1| phage integrase [Moraxella catarrhalis 101P30B1]
 gi|326575920|gb|EGE25843.1| phage integrase [Moraxella catarrhalis CO72]
          Length = 397

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 47/269 (17%), Positives = 94/269 (34%), Gaps = 36/269 (13%)

Query: 84  WGSLAVNSRI---SFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH-TPSSAIQFLT 138
           +   AV ++      +  F+  +    G      IT +     +ES    TP  A + LT
Sbjct: 107 YDKSAVITKKQASDIKRSFELYVFPVIGSLPINDITLQQYIIIIESISEKTPGIAERILT 166

Query: 139 SMRVLFKWAVRQEYVAINPCLSVE-------RPKRKTEGIRPWTKEDMQQFKSFW---SE 188
           + + + KWA ++E V  N    +E       R KRK    R  + +++  F         
Sbjct: 167 NTKQMLKWAKKREIVTHNILADLELSDFNLVRVKRK----RYLSDDEIILFYKALYGSKI 222

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK------TGTIITVELPDGFM 242
             + RLA E  L  G R  +  RA +   Q+ ++++  +       T   +   +     
Sbjct: 223 SYRNRLATELALMFGCRGIELRRAKITDFQDGVWTVPPENHKVGHITQQPLIRPILPPMQ 282

Query: 243 KLLA-MTPIGKETFFINNDKQKMNATQFS-------IWFKAKATKAGVNKSAHGVRKFSA 294
            L+     I +  +  +   + +    F         W     +      + H +R+ + 
Sbjct: 283 ALIDEAIAISRSEYLFDRRGEMLEKNAFLDITAGLIHWIDRHCSIQLPRFTFHDLRRTAR 342

Query: 295 TISADAGATAHELMATY-GWKTVDQAETY 322
           T  +    T+ ++     G    +  + Y
Sbjct: 343 TNFSA--FTSRDIAEIMIGHTVGNMQQVY 369


>gi|126726553|ref|ZP_01742394.1| probable site-specific integrase/recombinase [Rhodobacterales
           bacterium HTCC2150]
 gi|126704416|gb|EBA03508.1| probable site-specific integrase/recombinase [Rhodobacterales
           bacterium HTCC2150]
          Length = 336

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/240 (16%), Positives = 74/240 (30%), Gaps = 22/240 (9%)

Query: 102 IIRKSGDFDYRKITTKHIRSGVESRKH--TPSSAIQFLTSMRVLFKWAVRQEY---VAIN 156
           + +         I++    S  + R     P++  + L  +R +F+ A++ E+      N
Sbjct: 90  VKQHWAKLKLSTISSGVFSSYRDQRLKIVQPATVRRELGLLRAIFEVAIK-EWDFPFQNN 148

Query: 157 PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGV 214
           P   V++PK      R     +           + P  +L     L +G+R  +      
Sbjct: 149 PLACVKKPKEPASRDRRLNPGERGVLLKASESHTAPWLKLGILLALETGMRRGELLSVSW 208

Query: 215 QHLQNN--IFSIKTQKTGTIITVELPDGFMKLL---AMTPIGKETFFINNDKQKMNATQF 269
             L        I+  K G    + L    +  L          E   IN           
Sbjct: 209 GDLDIQSSTLLIQNTKNGYSRKIPLSKVAVDTLLNVHRPTNKCEDKIINLSSSAF----Q 264

Query: 270 SIWFKAKATKAG-----VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             W + K   A      ++   H +R  + +   + G +  E+    G +       YT 
Sbjct: 265 QSWQRCKKKVALNLPEILSLRFHDLRHEAVSRFFEIGLSVPEVALISGHRDPRMLFKYTH 324


>gi|126726759|ref|ZP_01742599.1| Phage integrase [Rhodobacterales bacterium HTCC2150]
 gi|126704088|gb|EBA03181.1| Phage integrase [Rhodobacterales bacterium HTCC2150]
          Length = 436

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/233 (15%), Positives = 74/233 (31%), Gaps = 18/233 (7%)

Query: 108 DFDYRKITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYV-AINPCLSV--E 162
           +     +T K      +    K  P+S  + +        + ++++ +   NP   V  +
Sbjct: 187 ETPVETLTRKDSNRYRDLLLSKMKPNSVKRLMGHTATALNFCIKEDDLNTRNPFQGVIIK 246

Query: 163 RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NN 220
                 +   P +KED+ +  + +         +  L  +G R S+     V  +   + 
Sbjct: 247 DAGSTKDDRLPLSKEDIYELNNAFDAPDDVTALWTTLRDTGARLSEIVYLAVGDVDLQDK 306

Query: 221 IFSIKTQ------KT-GTIITVELPDGFMKLLAMTPIGKET--FFINNDKQKMNATQFSI 271
             +I+        KT  +  T+ L D  +  L +   GKE          +   A   S 
Sbjct: 307 SVAIRPNAFRDSLKTASSERTIPLSDRALNALQLLRQGKEDNDPIFTRYARPRGADSASQ 366

Query: 272 WF--KAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
               + +       K+ H +R        ++G       A  G      A  Y
Sbjct: 367 MLMKRLRKVVKDPKKTLHSLRHSMKDALRNSGCPEELGKALLGHSDGSVASRY 419


>gi|301308115|ref|ZP_07214069.1| integrase [Bacteroides sp. 20_3]
 gi|300833585|gb|EFK64201.1| integrase [Bacteroides sp. 20_3]
          Length = 411

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/276 (14%), Positives = 96/276 (34%), Gaps = 28/276 (10%)

Query: 86  SLAVNSRISF---ESYFDQIIR---KSGDFDYRKITTKHIRSG----VESRKHTPSSAIQ 135
             A  +  ++        + I+   K  D  + ++  + IR      +E +K    +   
Sbjct: 128 DRAPTTMSTYVYTRRTLAEFIKTEFKVSDLAFGQLNEQFIRDYQDFCLEKKKLAMETVRH 187

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP--- 192
           +L+ ++ + + A ++ +         + PK+K    +  ++E+ ++ +       +    
Sbjct: 188 YLSILKKICRIAYKEGHSEKYHFCHFKLPKQKETTPKALSRENFEKLRDLEIPEKRRSHV 247

Query: 193 --RLAFEFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVELPDGFMKLL 245
             R  F F  Y+G   +D+     ++L  +         + +KT  +  V+L    + L+
Sbjct: 248 ITRDLFLFACYTGTAYADAVSITRENLFQDDEGSLWLKYRRKKTDYLGRVKLLPEALALI 307

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGAT 303
                              +        K+    AG+++    H  R    T++  AG  
Sbjct: 308 GKYRDDTRITLF----PPQDYHTLRANMKSLRLMAGLSQDLVYHMARHSFGTLTLTAGIP 363

Query: 304 AHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
              +    G   +D  + Y +  DR      +  R+
Sbjct: 364 IESIARMMGHTNIDSTQVYAQVTDRK--ISSDMDRL 397


>gi|255973229|ref|ZP_05423815.1| conserved hypothetical protein [Enterococcus faecalis T1]
 gi|255964247|gb|EET96723.1| conserved hypothetical protein [Enterococcus faecalis T1]
          Length = 376

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 48/296 (16%), Positives = 98/296 (33%), Gaps = 43/296 (14%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
            +     YRK    G L+ ++        D   +   D   +++T +  +  +     T 
Sbjct: 66  FRNWFEVYRK----GKLSQDNDGDIRRAVDFSEKYFPDTKLKELTRQEYQKALNDYGETH 121

Query: 131 SSA--IQFLTSMRVLFKWAVRQEYVAINPC---LSVERPKRKTEGIRPWTKEDMQQFKSF 185
           ++A   +  T MR   K A+ +  +  +P     ++ +   K E ++    ++       
Sbjct: 122 ATASVKKHHTYMRAALKDALEEGIIHRDPTYRVQAIGKKNPKHEELKYLNYQESIHLVHE 181

Query: 186 WSEGSQP----RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG----------- 230
             EG +P    R    F + +G R S+        +     ++K  KT            
Sbjct: 182 ILEGIKPTYTSRFIILFGIATGCRFSEIIGMTWDCIDFKNKTVKVNKTWDYKYTNTFSNT 241

Query: 231 ----TIITVELPDGFMKLLAMTP-------------IGKETFFINNDKQKMNATQFSIWF 273
               +   + + D  + LL                       F+N++ + ++ T  +   
Sbjct: 242 KNYQSKRIITIDDDTLDLLKKLQLHQKEYYLKSGLRNENNLVFLNDNMELVSNTAVNKVL 301

Query: 274 KAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGAD 327
           +    K G    + HG+R   A+I    G     +    G K +    +TY    D
Sbjct: 302 RKFCRKIGTKELTCHGLRHTHASIMLYKGINIKYVSRRLGHKDIVTTLQTYQHILD 357


>gi|238917723|ref|YP_002931240.1| integrase/recombinase XerC [Eubacterium eligens ATCC 27750]
 gi|238873083|gb|ACR72793.1| integrase/recombinase XerC [Eubacterium eligens ATCC 27750]
          Length = 400

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 46/312 (14%), Positives = 101/312 (32%), Gaps = 47/312 (15%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH 128
           T       Y +      + +N+ ++ E   D +I+    +    +IT   +R        
Sbjct: 59  TFGEFWKLYTEDVKNY-VKLNTWLTKEHIVDTKILPYFRNLKMNEITPGDVRKWQNEMVA 117

Query: 129 ---------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKED 178
                    + +        +  +F  A R   +  NP        + + + +  WT E+
Sbjct: 118 FRYENGKCYSQTYKKTMHNILSAIFNHACRFYNLKSNPARQAGNMGREEKKEMLFWTTEE 177

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT--------- 229
            ++F     +      AFE L ++G+R  +     ++       +++  K+         
Sbjct: 178 YKKFSEAVIDKPVSFYAFEMLYWTGMRLGELLALTMEDFDFEKNTVRINKSYQRLQGQDV 237

Query: 230 -------GTIITVELPDGFMK--------LLAMTPIGKETFFINNDKQKMNATQFSIWFK 274
                   +  T++LP    +        L   TP  +  F +                +
Sbjct: 238 ITTPKTPKSNRTIKLPKFLAEEMQEYFAMLYDQTPTDRI-FLVTKSFLH-------HEME 289

Query: 275 AKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
                +GV K   H +R    +   D G +A  +    G +++D    Y+      ++  
Sbjct: 290 RGCKLSGVKKIRIHDLRHSHISHLIDLGFSAVAIADRVGHESIDITYRYSHLFPSKQVA- 348

Query: 334 KNSRRISSVVDS 345
             + R+ +V  S
Sbjct: 349 -MADRLDAVNAS 359


>gi|213962179|ref|ZP_03390443.1| site-specific recombinase, phage integrase family protein
           [Capnocytophaga sputigena Capno]
 gi|213955185|gb|EEB66503.1| site-specific recombinase, phage integrase family protein
           [Capnocytophaga sputigena Capno]
          Length = 357

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/269 (15%), Positives = 94/269 (34%), Gaps = 26/269 (9%)

Query: 85  GSLAVNSRISFESY---FDQIIRKSG--DFDYRKITTKHIRSGVES--RKHTPSSAIQFL 137
            S++  +   ++     F + ++ +G  +     IT K I   + S   K +P +    L
Sbjct: 75  SSVSDKTFSDYKYRIGQFQKFLKSNGLENTPIGNITKKEINDFLNSVLLKSSPRNRNNTL 134

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF- 196
             +  +F      E +  N    +++ + K E  + +T+       +   E  +  L F 
Sbjct: 135 AVLNAIFSTLEENEIIQHNNVEKIKKLQAKPERNKTYTQNQQDDIFTLMEEKDRDLLLFV 194

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG--FMKLLAMTPIGKET 254
           +F+ Y+ LR  + CR  V+ +  +   +  +    ++ +++       ++     +    
Sbjct: 195 KFVSYNFLRPIEVCRLQVKDIDFDGAKLNVRAKNKLVKIKIIPEILLNEIQHFKGLSPNH 254

Query: 255 FFINNDK------QKMNATQFS-IWFKAKATKAGVNKS--AHGVRKFSATISADAGATAH 305
           +            ++MN   +    FK    +  + K    +  R    T       T +
Sbjct: 255 YLFTPTGVGDWQTEEMNKRDYWTKRFKKVKDELNLGKDYGLYSFRHTFITKLYRELRTQY 314

Query: 306 -------ELMATYGWKTVDQAETYTKGAD 327
                   LM   G  T+   + Y +  D
Sbjct: 315 SQYETYDRLMLITGHATLSALQQYLREID 343


>gi|167770452|ref|ZP_02442505.1| hypothetical protein ANACOL_01797 [Anaerotruncus colihominis DSM
           17241]
 gi|167667047|gb|EDS11177.1| hypothetical protein ANACOL_01797 [Anaerotruncus colihominis DSM
           17241]
          Length = 354

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 51/309 (16%), Positives = 107/309 (34%), Gaps = 29/309 (9%)

Query: 49  SALTGSTPKREYINSPRKKPTTLKWLISEYR---KSAHWGSLAVNSRISFESYFDQIIRK 105
           +A      +       R  P      + E     K +H+  L    +  + + + ++   
Sbjct: 48  AATRAEAQEALEEIVKRGIPMGFNDTLEEVYERWKDSHFRDLGEKGKEGYLNAWRRM-EP 106

Query: 106 SGDFDYRKITTKHIRSGVE---SRKHTPSSAI--------QFLTSMRVLFKWAVRQEYVA 154
             +   R I T   +  V+    +   P++A         +       L K A+++E + 
Sbjct: 107 IKEIRMRDIKTIDFQRIVDTAYKKSSDPAAAKPLSRSGKEKIKQLASQLCKQAMQEELIN 166

Query: 155 INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGV 214
            N    ++  +   +    +++ED+Q+  +   + S        LLYSG+R ++  +   
Sbjct: 167 RNYGEYIKLDQEIKKEKNIFSREDIQKLFAADDQQSAQ--IILVLLYSGMRINELFQMLQ 224

Query: 215 QHLQ-NNIFSIKTQKT--GTIITVELPDGFMKLLAM-TPIGKETFFINNDKQKMNATQFS 270
           +++  +  + I  +KT  G    + + D     +        +    N     ++   F 
Sbjct: 225 KNVYLDEHYMIGGEKTEAGRNRIIPIHDKIYPYIKNWLETPGKYLISNRSGAPIDLNNFR 284

Query: 271 IWFKAK---ATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKG 325
              +         G+  K+ H  R   A++ A +GA    L    G       AE Y   
Sbjct: 285 T--RDYYPLLESLGIERKNPHCTRHTFASMMAKSGARPEMLQKILGHANYSTTAEIYVH- 341

Query: 326 ADRIRLGIK 334
           AD   L  +
Sbjct: 342 ADFEDLKQE 350


>gi|153815915|ref|ZP_01968583.1| hypothetical protein RUMTOR_02160 [Ruminococcus torques ATCC 27756]
 gi|317500681|ref|ZP_07958899.1| phage integrase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331089843|ref|ZP_08338736.1| hypothetical protein HMPREF1025_02319 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145846734|gb|EDK23652.1| hypothetical protein RUMTOR_02160 [Ruminococcus torques ATCC 27756]
 gi|316897875|gb|EFV19928.1| phage integrase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330403540|gb|EGG83098.1| hypothetical protein HMPREF1025_02319 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 363

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 48/290 (16%), Positives = 92/290 (31%), Gaps = 43/290 (14%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR-- 126
           + +     Y +      L  N+ ++ E     +I+   G     +I+TK I +       
Sbjct: 57  SFEAFTELYIRDVK-TRLKENTWLTKEHIIRTKILPYFGKLRISEISTKEIITWQNELLA 115

Query: 127 ----KHTPSSAIQFLTS---MRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKED 178
               K  P S     T    +  +F  AVR   +  NP   V      + + +  WTKE+
Sbjct: 116 YRDEKKKPYSQTYLKTLHNQLSAIFNHAVRYYELRSNPAAKVGNMGSEEHKEMLFWTKEE 175

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK---------- 228
            ++F     +      AFE L + G+R  +              +++  K          
Sbjct: 176 YKKFSFEMMDKPVSFYAFEMLYWCGIREGELLALTAADFDFEKETVRINKSYQRLHGEDV 235

Query: 229 ------TGTIITVELPDGFMK-------LLAMTPIGKETFFINNDKQKMNATQFSIWFKA 275
                   +   +++P    +       +L         F +         +        
Sbjct: 236 ITTPKTKKSNRMIKMPKFLCEEMQEYLSMLYGLKKKDRIFTVTK-------SYLHHEMDR 288

Query: 276 KATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            A  AGV +   H +R    ++  D G +A  +    G +++D    Y  
Sbjct: 289 GANAAGVKRIRIHDLRHSHISLLIDMGFSAVAIADRVGHESIDITYQYAH 338


>gi|118465318|ref|YP_880052.1| site-specific recombinase, phage integrase family protein
           [Mycobacterium avium 104]
 gi|118166605|gb|ABK67502.1| site-specific recombinase, phage integrase family protein
           [Mycobacterium avium 104]
          Length = 160

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/151 (17%), Positives = 49/151 (32%), Gaps = 3/151 (1%)

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-ITVELPDGFMKLLAM 247
             + R+        GLR ++  R   + +     +I     G     + L    +     
Sbjct: 2   HHRTRVMILLAALGGLRVAEISRVRGEDIDIAKPAIHVVGKGKRSAWLPLHVLLVDAALT 61

Query: 248 TPIGKETFFINND--KQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAH 305
            P     F  N+      +++   S        +AGV  + HG+R +  T   D GA   
Sbjct: 62  MPTRGWWFPANSRRPGDHVHSKSVSDIIGNAMRRAGVRGTPHGLRHWYGTTLLDDGADLR 121

Query: 306 ELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
            +      +++   + YT+  D  R      
Sbjct: 122 TVQELLRHRSLSTTQIYTRVTDERRAAAVGR 152


>gi|326405643|gb|ADZ62714.1| integrase [Lactococcus lactis subsp. lactis CV56]
          Length = 394

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 50/367 (13%), Positives = 112/367 (30%), Gaps = 56/367 (15%)

Query: 30  GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAV 89
           G+++R     +S  +     +   +  ++      +      K +   +  S     +  
Sbjct: 28  GKQVRKVITAKSEKMCNTKISRAINEFEKNGQTVRKVSVDDFKDIAMLWFDSYK-LGVKP 86

Query: 90  NSRISFESYFD-QIIRKSGDFDYRK---ITTKHIRSGVESRKHTP-SSAIQFLT------ 138
            +    ++  +  ++   G++   K   I  + I +        P + A           
Sbjct: 87  RTVQIMQTRLNNYVLPALGEYRIDKVNSIILQQIVNQWMINASQPLNGAYHRPKGKGKDF 146

Query: 139 -----SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP----WTKEDMQQFKSFWSEG 189
                 +  +FK A+    V  NPC++V  PK + E         T E ++ F  +    
Sbjct: 147 KIYFNIVERIFKHALSLGLVKDNPCVNVIVPKVRLESTEKKVKHLTAEQLKIFFEYIGAL 206

Query: 190 SQPRLAFEFL-------LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD--- 239
            + +   E +       + SGLR  ++       +     S+   KT     ++      
Sbjct: 207 PKEKYTNELMTGLCRLLVASGLRIGEAVALSWSDIDFKTGSVSVSKTTLRAVIQSTPKTD 266

Query: 240 -------------------GFMKLLAMTPIGK---ETFFINNDKQKMNATQFSIWFKAKA 277
                                 +      IGK   E  F N     ++      +     
Sbjct: 267 KSNRIVLIDSKAVEVLKHWELFQAKYFMSIGKGKQELVFPNRTGGVLDYQTMRPFLIKWL 326

Query: 278 TKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK-GADRIRLGIK 334
               + +   HG R   A++  +A     E+    G  ++    +TY+   +D     ++
Sbjct: 327 RACQLPQVGFHGFRHSHASLLLNADVPYKEIQERLGHASIKMTMDTYSHLESDNKIKAVE 386

Query: 335 NSRRISS 341
               I++
Sbjct: 387 RFESIAN 393


>gi|315442845|ref|YP_004075724.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1]
 gi|315261148|gb|ADT97889.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1]
          Length = 389

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 66/358 (18%), Positives = 116/358 (32%), Gaps = 41/358 (11%)

Query: 3   PSLRLPPFVTKERTRHGKIIY----YFRKGHG--RRI--RLPYPHESTFIPAYMSALTGS 54
           P+LR+       R + G   +     FR   G  R++  R P P    +  A   AL   
Sbjct: 5   PALRIGQHGRITRDQIGDGFWCARCRFRDVDGVSRKVERRSPAPGADQYGRAAEDALVEH 64

Query: 55  TPKREYINSPRKKPTTLKWLISEY-RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK 113
             +R          T +  L+  Y  + A  G LA  +  ++      + +  G      
Sbjct: 65  LAERRVATGEINLDTPVMDLVDRYIEQRAAEGLLADRTLDTYRYDAKLMRKIVGALRVGD 124

Query: 114 ITTKHIRSGVESRK--HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT-EG 170
            T   + + +      H P+ A Q  T +R   + AV    +  NP   V   +R   +G
Sbjct: 125 ATPARLDAALRKAAAVHGPTLATQCKTLLRGGLQLAVMATVLGGNPVRDVGAIRRPPAKG 184

Query: 171 IRPWTKEDMQQFKSFWSEGSQPRL-----AFEFLLYSGLRCSDSCRAGVQHLQ------- 218
               T ++++   +                   L+ +GLR S+        L        
Sbjct: 185 AAALTGDELRALLAALRASQTAADLDLVDPVVVLIGTGLRRSELLGLRWSDLDVDAARLA 244

Query: 219 --------NNIFSIKTQKTGTII---TVELPDGFMKLL-----AMTPIGKETFFINNDKQ 262
                        ++   T +     TV LP   +++L           ++  F ++   
Sbjct: 245 VTGKLVRVAGRGLVRVDTTKSAAGMRTVALPKFVVQVLDDRRGRPFLGEQKMVFPSSTGT 304

Query: 263 KMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
             +   F+  +       GV   ++H  RK  AT+  DAG +A       G   V   
Sbjct: 305 WRDPDNFNANWAGVRESLGVAEVTSHSFRKTVATLLDDAGLSARIAADQLGHSRVSMT 362


>gi|254502240|ref|ZP_05114391.1| site-specific recombinase, phage integrase family protein
           [Labrenzia alexandrii DFL-11]
 gi|222438311|gb|EEE44990.1| site-specific recombinase, phage integrase family protein
           [Labrenzia alexandrii DFL-11]
          Length = 354

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 63/198 (31%), Gaps = 25/198 (12%)

Query: 145 KWAVRQEYVA-INPCLSVERPKR----KTEGIRPWTKEDMQQF-------KSFWSEGSQP 192
            W +  +     N   +  R K          RP T +++ +        K  + E +  
Sbjct: 145 AWDIPLDLQEIRNATAAARRLKIIGKDAPRARRP-TLDELNRLLGYFEETKRRYPESADM 203

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK-----TGTIITVELPDGFMKLLAM 247
                F ++S  R  +           N   ++  K      G  +   LPD  ++LL+ 
Sbjct: 204 PRIILFAIFSARRQGEITSLRRLDFDGNRILVRDMKDPVRGKGNDLWCNLPDRALRLLSS 263

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHE 306
           TP     FF         +   S  F        + +   H +R   A+  A+ G T  +
Sbjct: 264 TPNKGPLFF------PYKSRTISTQFSRACKVLDISDLRFHDLRHEGASWLAELGWTIPQ 317

Query: 307 LMATYGWKTVDQAETYTK 324
           + +  G +       Y+ 
Sbjct: 318 IASVTGHRGWQGLMRYSH 335


>gi|125622936|ref|YP_001031419.1| phage integrase [Lactococcus lactis subsp. cremoris MG1363]
 gi|124491744|emb|CAL96663.1| phage integrase [Lactococcus lactis subsp. cremoris MG1363]
 gi|300069675|gb|ADJ59075.1| phage integrase [Lactococcus lactis subsp. cremoris NZ9000]
          Length = 394

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 50/367 (13%), Positives = 112/367 (30%), Gaps = 56/367 (15%)

Query: 30  GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAV 89
           G+++R     +S  +     +   +  ++      +      K +   +  S     +  
Sbjct: 28  GKQVRKVITAKSEKMCNTKISRAINEFEKNGQTVRKVSVDDFKDIAMLWFDSYK-LGVKP 86

Query: 90  NSRISFESYFD-QIIRKSGDFDYRK---ITTKHIRSGVESRKHTP-SSAIQFLT------ 138
            +    ++  +  ++   G++   K   I  + I +        P + A           
Sbjct: 87  RTVQIMQTRLNNYVLPALGEYRIDKVNSIILQQIVNQWMINASQPLNGAYHRPKGKGKDF 146

Query: 139 -----SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP----WTKEDMQQFKSFWSEG 189
                 +  +FK A+    V  NPC++V  PK + E         T E ++ F  +    
Sbjct: 147 KIYFNIVERIFKHALSLGLVKDNPCVNVIVPKVRLESTEKKVKYLTAEQLKIFFEYIGAL 206

Query: 190 SQPRLAFEFL-------LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD--- 239
            + +   E +       + SGLR  ++       +     S+   KT     ++      
Sbjct: 207 PKEKYTNELMTGLCRLLVASGLRIGEAVALSWSDIDFKTGSVSVSKTTLRAVIQSTPKTD 266

Query: 240 -------------------GFMKLLAMTPIGK---ETFFINNDKQKMNATQFSIWFKAKA 277
                                 +      IGK   E  F N     ++      +     
Sbjct: 267 KSNRIVLIDSKAVEVLKHWELFQAKYFMSIGKGKQELVFPNRTGGVLDYQTMRPFLIKWL 326

Query: 278 TKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK-GADRIRLGIK 334
               + +   HG R   A++  +A     E+    G  ++    +TY+   +D     ++
Sbjct: 327 RACQLPQVGFHGFRHSHASLLLNADVPYKEIQERLGHASIKMTMDTYSHLESDNKIKAVE 386

Query: 335 NSRRISS 341
               I++
Sbjct: 387 RFESIAN 393


>gi|330995439|ref|ZP_08319345.1| site-specific recombinase, phage integrase family [Paraprevotella
           xylaniphila YIT 11841]
 gi|329575584|gb|EGG57119.1| site-specific recombinase, phage integrase family [Paraprevotella
           xylaniphila YIT 11841]
          Length = 411

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 52/293 (17%), Positives = 112/293 (38%), Gaps = 31/293 (10%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQ------IIRKSGDFDYRKITTK---HIRSGVESR 126
            +Y K    G  A  + + + + +        I     D   +++T          + + 
Sbjct: 118 EDYEKQVEAGMKAKGTLLKYRTVYKHMQEFLDIRYHVKDIALKELTPAFISDFEMFLRTD 177

Query: 127 KHTPSSAIQFLTS-MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           KH  ++ +      +R +   A+  E++  +P    E  K +T      TKE+++     
Sbjct: 178 KHCCTNTVWLYVCPLRTMVFIAINNEWLTRDPFREYEIKKEETT-RSFLTKEEIRLLMDG 236

Query: 186 WSEGSQPRLAFEFLLY---SGLRCSDSCRAGVQHLQN-----NIFSIKTQKTGTIITVEL 237
             + ++  L  +  L+   +GL  SD      ++++         +I  QKTG +  + L
Sbjct: 237 KLKNAKQELYRDLYLFCAFTGLSFSDMRNLTEENIRTYFDEHEWININRQKTGVVSNIRL 296

Query: 238 PDGFMKLLAMTPIGKETFFINNDK--QKMNATQFSIWFKAKATKAGVNK--SAHGVRKFS 293
            D     +A   IGK      N +     +        +A A + G+ K  + H  R  +
Sbjct: 297 LD-----IANRIIGKYRGLCENGRIFPVPHYNTCLAGIRAVAKRCGITKHITWHQSRHTA 351

Query: 294 AT-ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345
           AT +    G     + +  G K++   + Y K   + +L  ++   +++ ++S
Sbjct: 352 ATTVFLSNGVPIETVSSMLGHKSIKTTQIYAK-ITKEKLN-QDMENLAARLNS 402


>gi|307710136|ref|ZP_07646580.1| phage integrase family protein [Streptococcus mitis SK564]
 gi|307619116|gb|EFN98248.1| phage integrase family protein [Streptococcus mitis SK564]
          Length = 387

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 54/309 (17%), Positives = 118/309 (38%), Gaps = 54/309 (17%)

Query: 85  GSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS--------AIQ 135
            ++  N++ S +    + +I   G +   K+TT  I+  V       +           +
Sbjct: 83  HTVKPNTQDSVKRLLSNHVIPLFGSYRLDKLTTPTIQRIVNQLALRANKREEGAFLHYDK 142

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI---RPWTKEDMQQFKSFWSEGSQP 192
                + + ++AV  + + +NP   V  P++  +G    + +   +++QF S+  E +  
Sbjct: 143 IHALNKRILQYAVTMQIIDMNPAREVILPRKIKKGRNKVKHFNNLELKQFLSYLEEANLA 202

Query: 193 --RLAFEFLLY-----SGLRCSDSCRAGVQHLQNNIFSIKTQKT-------------GTI 232
             R  +E  LY     +G R +++       +  N  ++   KT              + 
Sbjct: 203 IYRNIYEITLYKFLLATGCRINEALALHWSDIDLNNATVNITKTLNHLGEINSPKSEASY 262

Query: 233 ITVELPDGFMKLLA---------MTPIGK-ETFFINNDKQKMN-----ATQFSIWFKAKA 277
            T+++    +++L             +G+ ET   ++   K       +T+ +  FK   
Sbjct: 263 RTIDIDPQTIEVLKVYQKRQRQEAWKLGRTETVVFSDFIHKYPNNKTLSTRLNTRFKH-- 320

Query: 278 TKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK-GADRIRLGIK 334
             AGV N   HG R   A++  ++G    EL    G  T+    +TY+    ++ +  + 
Sbjct: 321 --AGVPNIGFHGFRHTHASLLLNSGIPYKELQHRLGHSTLAMTMDTYSHLSKEKAKTAVS 378

Query: 335 NSRRISSVV 343
              +  S +
Sbjct: 379 FYEKAVSSL 387


>gi|222159805|gb|ACM47280.1| integrase-like protein IntD [Enterococcus avium]
          Length = 278

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/262 (12%), Positives = 76/262 (29%), Gaps = 19/262 (7%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
           I  + +S +    +  +   +     ++          K      R  ++S+     +  
Sbjct: 9   IQAFEESLYLNEKSKATVNKYLRAVRKLAEYLSGEGLTKSRLLEYRKILQSQ-VKAQTVN 67

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI----RPWTKEDMQQFKSFWSEGS 190
             L+S+    ++     +        ++  K + +      R  ++ + +Q  +      
Sbjct: 68  GALSSINAFLEFC---GWQD----CKIKLLKVQRKAFLDETRELSEAEYKQLLAAAQAKG 120

Query: 191 QPRLAFEFL--LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV--ELPDGFMKLLA 246
             RL    L    +G+R S+     V+  Q     I  +     + +  EL    +K   
Sbjct: 121 NERLYLVMLTICGTGIRVSELQHITVEAAQTGRAEICMKGKNRTVLLQKELRTRLLKYAK 180

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGAT 303
              I +   F     + ++ T      K     A V+      H +R   A         
Sbjct: 181 ELGINEGHIFRTRSGKPLDRTNICHDMKKLCASARVDPRKVFPHNLRHLFARSFYAIEKN 240

Query: 304 AHELMATYGWKTVDQAETYTKG 325
              L    G   ++    Y   
Sbjct: 241 LAHLADILGHSRIETTRIYVAA 262


>gi|146317758|ref|YP_001197470.1| hypothetical protein SSU05_0100 [Streptococcus suis 05ZYH33]
 gi|145688564|gb|ABP89070.1| unknown protein [Streptococcus suis 05ZYH33]
 gi|292557559|gb|ADE30560.1| Integrase, catalytic core, phage [Streptococcus suis GZ1]
          Length = 380

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/279 (14%), Positives = 90/279 (32%), Gaps = 47/279 (16%)

Query: 90  NSRIS-FESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP-----------SSAIQFL 137
           +++ + +E +   I     + +  K++ +HI    E  K  P           ++  + +
Sbjct: 88  STQRNNYERH---IKPYFINTNLNKLSYEHIFEFREYLKIKPKKQNDSSTLSHNTVNKIM 144

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR-LAF 196
             ++ +F   VR+  +  NP  ++ +       I  W  E+  +F+   +       L F
Sbjct: 145 ILLKKIFDTGVRKSLIDKNPVENIRKLPISKPTINFWNVEEFNEFRKLITSDEISYDLFF 204

Query: 197 EFLLYSGLRCSDSCRAGVQHLQ---------------NNIFSIKTQKTGTIIT-VELPDG 240
               ++G+R  +        +                N    I + KT      + +   
Sbjct: 205 TIAFFTGMRLGEIVALTWYDINLITNSIHITKTAYFVNGTNHINSTKTRAGTRRITINHK 264

Query: 241 FMKLLAMTPIGKETFF--INNDKQ----------KMNATQFSIWFKAK-ATKAGVNK-SA 286
             ++LA     ++        D +           M        FK   A    + K   
Sbjct: 265 LARMLADWKEKQKDLLKEFTTDTENLQVIQSTPLPMTKNMIDKKFKQILARNDYLKKIRI 324

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
           H +R   A++  + G     +    G  ++    +TY+ 
Sbjct: 325 HDLRHSHASLLINQGEDYLVVKERLGHASITTTIDTYSH 363


>gi|82544199|ref|YP_408146.1| transposase [Shigella boydii Sb227]
 gi|81245610|gb|ABB66318.1| putative transposase [Shigella boydii Sb227]
 gi|332094957|gb|EGI99997.1| phage integrase family protein [Shigella boydii 3594-74]
          Length = 411

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 44/314 (14%), Positives = 87/314 (27%), Gaps = 65/314 (20%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHIRSGVE---- 124
           T   L   + K      L  N+    +S    +            I    I +       
Sbjct: 82  TFGELCDIWTKIKE-TELTTNTMKKTKSQLKTLRIIICESTPISHIRYSDILNYRNELLH 140

Query: 125 ------------SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
                        +  T  +   ++  +  L ++A +  +++  P   V++ +R      
Sbjct: 141 GETLYLDNPRSNKKGRTVRTVDSYIALLCSLLRFAYQSGFISTKPFEGVKKLQRNRIKPD 200

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
           P +K +         +G    L  +F +YSGLR  +      + +      +  ++  TI
Sbjct: 201 PLSKTEFNALMES-EKGQSQNLW-KFAVYSGLRHGELAALAWEDVDFEKGIVNVRRNLTI 258

Query: 233 ITVELPDG----------FMKLLAMTP-----IGKE-----TFFINNDKQK--------- 263
           + +  P                L          G       TF+     +          
Sbjct: 259 LDMFGPPKTNAGIRTVTLLQPALEALKEQYKLTGHHRKSEITFYHREYGRTEKQKLHFVF 318

Query: 264 ------------MNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMA 309
                        + +     + A   +AG+ +    H  R   A     AGA    + +
Sbjct: 319 MPRVCNEKQKPYYSVSSLGARWNAAVKRAGIRRRNPYHT-RHTFACWLLTAGANPAFIAS 377

Query: 310 TYGWKTVDQA-ETY 322
             G +T     E Y
Sbjct: 378 QMGHETAQMVYEIY 391


>gi|323176909|gb|EFZ62499.1| prophage CP4-57 integrase [Escherichia coli 1180]
          Length = 304

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 44/268 (16%), Positives = 93/268 (34%), Gaps = 20/268 (7%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPS--S 132
           + + +     +LA N+        +  +    G+     +T +     +   K   +  +
Sbjct: 3   TAWYQVKISQNLAPNTIKDIWRSLEKYVFPFIGNTPIDTLTARRFVEVLTPIKERGNLET 62

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVER-----PKRKTEGIRPWTKEDMQQFKSFWS 187
             + L  +  +  +A     +  NP ++V +      K+    IRP    ++ Q  S  +
Sbjct: 63  LKRVLQRVNEVMDYAANSGMIDANPAMNVRKAFPSPVKKHMPTIRPEQLPELMQALSVSA 122

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIITVELPDGFMK 243
              Q RL  E+ L +  R  ++  A  + +              K      + L D  M 
Sbjct: 123 TERQTRLLIEWQLLTVTRPVEASSARWEEIDMEAQRWTIPAGRMKMRRDHVIPLCDQAMA 182

Query: 244 LLAMTPI---GKETFF--INNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISA 298
           +L         ++  F  + + +Q MN+   +   +     AGV  S HG+R   +T + 
Sbjct: 183 VLEAMKPISHHRDYVFPSLKDPRQPMNSQTANAALRRMGF-AGVLVS-HGLRAIFSTAAN 240

Query: 299 DAGATAHELMATYGWKTVDQAET-YTKG 325
           + G     + A       ++    Y + 
Sbjct: 241 EEGFEPDVIEAALAHVDTNEVRRAYNRS 268


>gi|308182836|ref|YP_003926963.1| integrase-recombinase protein [Helicobacter pylori PeCan4]
 gi|308065021|gb|ADO06913.1| integrase-recombinase protein [Helicobacter pylori PeCan4]
          Length = 356

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/174 (14%), Positives = 63/174 (36%), Gaps = 15/174 (8%)

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIIT 234
           E + + +      ++ RL  + ++++G+R +++ +  ++    +N  ++I  +  G    
Sbjct: 179 ESIDKIEMSAKVRARNRLLIKIIVFTGMRSNEALQLKIKDFTLENGCYTILIKGKGDKYR 238

Query: 235 VELPDG------FMKLLAMT---PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284
             +           + L      P+  +  F N     +         +     AG+ + 
Sbjct: 239 AVMLKAFHIESLLKEWLTERELYPVKNDLLFCNQKGSALTQAYLYKQVERIINFAGLRRE 298

Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
              AH +R   AT+          +    G  +++ +  YT   D+ RL    S
Sbjct: 299 KNGAHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTH-FDKQRLEEAAS 351


>gi|237752297|ref|ZP_04582777.1| integrase/recombinase XerD [Helicobacter winghamensis ATCC BAA-430]
 gi|229375786|gb|EEO25877.1| integrase/recombinase XerD [Helicobacter winghamensis ATCC BAA-430]
          Length = 355

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 65/191 (34%), Gaps = 23/191 (12%)

Query: 163 RPKRKTEGIRPWTKEDMQQF--------KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGV 214
           R K   +      + ++ +F              G++ RL  + ++Y+G+R  ++    +
Sbjct: 158 RGKSGQKLPSFMNENEVHRFIDGINNFTFKHQDLGARNRLILKIIIYTGIRVGEALGLKL 217

Query: 215 QHL--QNNIFSIKTQKTGTIITVELPDG---------FMKLLAMTPIGKETFFINNDKQK 263
           + +      + I+ +  G    V +            +          ++  F N+  +K
Sbjct: 218 KDIMQDGEFYLIQVRGKGNKPRVVMLKSKNIHTDLQLWKSTRDTMQAEEDLLFCNHKGKK 277

Query: 264 MNATQFSIWFKAKATKAGVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
           +     S   +      G+ K    AH +R   AT+          +    G  ++D + 
Sbjct: 278 LTQAYISRIVEQVLVANGIRKEKNGAHMLRHSFATLLYQKSQDLVLVQEALGHASLDTSR 337

Query: 321 TYTKGADRIRL 331
            Y    D+ +L
Sbjct: 338 IYMH-FDKQKL 347


>gi|254186414|ref|ZP_04892931.1| phage integrase [Burkholderia pseudomallei Pasteur 52237]
 gi|157934099|gb|EDO89769.1| phage integrase [Burkholderia pseudomallei Pasteur 52237]
          Length = 379

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 61/342 (17%), Positives = 111/342 (32%), Gaps = 30/342 (8%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEY 78
           G  I   R   G++          F  A  + L  S      +++   K TT+K     Y
Sbjct: 41  GTWIARRRNEAGKQEYKALGTLPNFDDAVKATLEWSKAADAGVST---KTTTVKDACEHY 97

Query: 79  RKSAHWGSLAVNSRISFESYFDQII--RKSGDFDYRKITTKHIRSGV------------- 123
            K         +S+   E  F +++   K G  D  K+ T H++  +             
Sbjct: 98  AKHLGLHK-GASSKSDAEGRFKRLVYDDKIGRIDLAKLRTSHVKDWLAEQISEIEESAED 156

Query: 124 -ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC-LSVERPKRKTEGIRP-WTKEDMQ 180
            +  +    SA + L S++     A+    VA +    +V + K      +     ED  
Sbjct: 157 EDDLRRAKDSANRNLASLKAALNLALHDRLVATDAGWKTVTKFKDVGRRRQSFLPAEDRN 216

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
                 +E  +     + +L++  R  +  RA V+H      ++          V L   
Sbjct: 217 ALIGASAEDLRQL--IKAMLFTAARPGELARAYVKHFDRLQGTLVLDGKTGHRVVSLSSA 274

Query: 241 FMKLLAMTPIGK---ETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSAT 295
            ++       GK      F     Q  N   +   FK     A +  S   + +R  + +
Sbjct: 275 AIRFFEDQTKGKIANAPIFSTEYGQPWNKDSWKKPFKDAVKAAELPASVVMYSLRHTAIS 334

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNS 336
               +G  + E+    G  T    + Y     DR+R  +   
Sbjct: 335 EMIASGIDSFEVARMAGTSTEMIDKHYGHLRHDRMRAKLDAI 376


>gi|159904432|ref|YP_001548094.1| integrase family protein [Methanococcus maripaludis C6]
 gi|159885925|gb|ABX00862.1| integrase family protein [Methanococcus maripaludis C6]
          Length = 324

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/298 (13%), Positives = 99/298 (33%), Gaps = 32/298 (10%)

Query: 74  LISEYRKSAHWGSLAVNSRI---SFESYFDQIIRKSGDFDYRKITTKHIR--SGVESRKH 128
            I ++R+   + ++  ++     +    F     +     Y   T   +   + + +R++
Sbjct: 26  YIMKFREEREFDNIKPSTIKNDITSLKVFLAFCEEIEKEPYSLTTHDFVIFFNMLNNRRN 85

Query: 129 -TPSSAIQFLTSMRVLFKWAV-------RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
            T  +  ++   ++V ++           +E +        E+    T     + +   +
Sbjct: 86  CTVRTQNRYFNLLKVFYRLLKYDNFKEFERESIERKRFSKFEKKHYDTINFDTYNRIIKE 145

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH--LQNNIFSIKTQKTGTIITVELP 238
              S      +  L    L  +G R S++     +    +   F I+  KT    TV + 
Sbjct: 146 IILSNSRTRLRDALIVRVLWETGCRRSEALNIRYKDCDFEKGRFRIRDTKTYEERTVVIA 205

Query: 239 DGFMKLLA------MTPIGKETFFIN---NDKQKMNATQFSIWFKAKATKA--------G 281
              +++L       +     +  F N    + +++     +  FK    K         G
Sbjct: 206 QETVEILRDYIKENIRRDSNDYIFQNEMIQNGKRVKLDWITNVFKKAVRKLKEEGVIQEG 265

Query: 282 VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
                H +R   AT   D G     +    G ++++    Y+   +R    + N +++
Sbjct: 266 KRIVIHSLRHGRATDLLDKGVPIDVVKEILGHRSLETTLYYSHSKERKDGMLDNIQKL 323


>gi|327402602|ref|YP_004343440.1| integrase family protein [Fluviicola taffensis DSM 16823]
 gi|327318110|gb|AEA42602.1| integrase family protein [Fluviicola taffensis DSM 16823]
          Length = 405

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 44/274 (16%), Positives = 100/274 (36%), Gaps = 33/274 (12%)

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVES 125
            P TL+  ++ ++   ++  +  N    + +  D   + +   +    I+ +H       
Sbjct: 130 SPNTLQRYLAAFKHLGNFIQVQYNCSDIYLNELDHAFVTRFEQYLKTVISCQH------- 182

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINP----CLSVERPKRKTEGIRPWTKEDMQQ 181
                +SA++ + +++ +   A+  +Y+  +P     +S++  KR        T+ ++ Q
Sbjct: 183 -----NSAMKHVKALKKVVNLALANDYIKKDPFANYTISIKEVKRD-----CLTQAELDQ 232

Query: 182 FKSFWSEGSQ---PRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTII 233
             S      +    R  F F  Y+GL  +D      +H+Q          ++  KT T  
Sbjct: 233 IASKEISIERLDVIRDLFLFQCYTGLAFADLASLTPEHIQIGVDRHKWLFVERTKTNTDC 292

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHG--VRK 291
            + L     ++++      E    N      +  + + + K      G+ K+ H    R 
Sbjct: 293 RIPLFPITEEIVSKYKDHPERIIKNRLLPVPSNQKMNAYLKELGAICGITKNIHTHLARH 352

Query: 292 FSA-TISADAGATAHELMATYGWKTVDQAETYTK 324
             A T++         +    G K +   + Y K
Sbjct: 353 TYATTVTLGNNIPIETVSKLLGHKKIQTTQIYAK 386


>gi|281423749|ref|ZP_06254662.1| integrase [Prevotella oris F0302]
 gi|282881646|ref|ZP_06290309.1| site-specific recombinase, phage integrase family [Prevotella
           timonensis CRIS 5C-B1]
 gi|281304405|gb|EFA96502.1| site-specific recombinase, phage integrase family [Prevotella
           timonensis CRIS 5C-B1]
 gi|281402151|gb|EFB32982.1| integrase [Prevotella oris F0302]
          Length = 411

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 51/296 (17%), Positives = 110/296 (37%), Gaps = 32/296 (10%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQ------IIRKSGDFDYRKITTK---HIRSGVESR 126
            +Y K    G  A  + + + + +        I     D   +++T          + + 
Sbjct: 118 EDYEKQVEAGMKAKGTLLKYRTVYKHLQEFLDIRYHVKDIALKELTPAFISDFEMFLRTD 177

Query: 127 KHTPSSAIQFLTS-MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           KH  ++ +      +R +   A+  E++  +P    E  K +T      TKE+++     
Sbjct: 178 KHCCTNTVWLYVCPLRTMVFIAINNEWLTRDPFREYEIKKEETT-RSFLTKEEIRLLMDG 236

Query: 186 WSEGSQPRLAFEFLLY---SGLRCSDSCRAGVQHLQN-----NIFSIKTQKTGTIITVEL 237
             + ++  L  +  L+   +GL  SD      ++++         +I  QKTG +  + L
Sbjct: 237 KLKNAKQELYRDLYLFCAFTGLSFSDMRSLTEENIRTYFDEHEWININRQKTGVVSNIRL 296

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW---FKAKATKAGVNK--SAHGVRKF 292
            D     +A   IGK       D +      ++      +A A + G+ K  + H  R  
Sbjct: 297 LD-----IANRIIGKYRGLC-EDGRIFPVPHYNTCLAGIRAVAKRCGITKHITWHQSRHT 350

Query: 293 SAT-ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
           +AT +    G     + +  G K++   + Y K   + +L       ++ +   ++
Sbjct: 351 AATTVFLSNGVPIETVSSMLGHKSIKTTQIYAK-ITKEKLNQDMENLVARLSGIEE 405


>gi|225628807|ref|ZP_03786841.1| Hypothetical protein, conserved [Brucella ceti str. Cudo]
 gi|225616653|gb|EEH13701.1| Hypothetical protein, conserved [Brucella ceti str. Cudo]
          Length = 418

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 48/312 (15%), Positives = 110/312 (35%), Gaps = 28/312 (8%)

Query: 49  SALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSG 107
           +A      ++    +  K   T      ++ +      ++  +R      +++ +  K G
Sbjct: 93  AAGKSPAKEKARDKARVKDAETFGAWAEKWLRGYQ---MSETTRNMRRGTYERDLKPKFG 149

Query: 108 DFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165
           +    +IT + +R+  ++   +  PS+A+     M ++F+WA+ +     NP   V    
Sbjct: 150 NRKLIEITHEDLRALTDAIVEQGRPSTAVVCREIMMLVFRWAIERGQKVENPADLVRPST 209

Query: 166 RKT--EGIRPWTKEDMQQFKSFWS-EGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQ-- 218
                   R  T E++     +    G+ P  R A + LL + +R S+   A    +   
Sbjct: 210 IAKFEPRDRALTPEEIGLMYQYMERIGTTPSIRAAAKLLLLTMVRKSELTNATWSEINFI 269

Query: 219 NNIFSIKTQ--KTGTIITVELPDGFMKLLAMTPI---GKETFFINNDKQ--KMNATQFSI 271
           + +++I  +  K      V L    +++         G E    +       M++   + 
Sbjct: 270 DALWTIPKERMKRRNPHLVFLSRQVLEIFTALKTFAGGSEYVLPSRYDSDLPMSSATLNQ 329

Query: 272 WFKAKATKAGVNKS------AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
                   A            H +R+ ++T+  +AG     +      +       Y K 
Sbjct: 330 VLTLTYRLAQKEGQSLGKFGPHDLRRTASTLLHEAGYNTDWIEKCLAHEQKGVRAVYNKA 389

Query: 326 --ADRIRLGIKN 335
              D+ R  +++
Sbjct: 390 EYRDQRRAMLQD 401


>gi|88704889|ref|ZP_01102601.1| phage integrase [Congregibacter litoralis KT71]
 gi|88700584|gb|EAQ97691.1| phage integrase [Congregibacter litoralis KT71]
          Length = 410

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 65/376 (17%), Positives = 124/376 (32%), Gaps = 46/376 (12%)

Query: 7   LPPFVTKERTRHGKIIYYFRKG-------HGRRIRLPYPHESTFIPAYMSALTGSTPKRE 59
           LP F  +  TR G   Y              RR++L    E T   A + A    T   E
Sbjct: 28  LPGFGVR-VTRGGTRTYIVMTRELANGHWRKRRVKLGRTSELTLADARVRARAILTAASE 86

Query: 60  YINSPRKKPTTLKWLI------------SEYRKSAHWGSLA---VNSRISFESYFDQ-II 103
             +     P T + L+              +  S           ++   +       ++
Sbjct: 87  GKHLDDVAPPTPRDLLVEQSKQTFAKERERFLSSYRGRGGRRPVESTLGEYRRCLQHNVL 146

Query: 104 RKSGDFDYRKITTKHIRSGVESRKHTP--SSAIQFLTSMRVLFKWAVRQEYVAINPCLSV 161
               D   ++IT   +++ +++       S A++  T +++LF W   +  ++I+P   V
Sbjct: 147 ESWTDVPVQEITHDDVKTALQTVMDDGHESRAVKIYTVLKLLFGWLCDENLISISPLSQV 206

Query: 162 ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221
           +RP       R  ++E++    +   EG    +    +L +G R  +        +  + 
Sbjct: 207 KRPAHIGVRERVLSEEELILIWNHAGEGIYANIVRIMML-TGQRRQEVAGMCWSEINLDK 265

Query: 222 FSI----KTQKTGTIITVELPDGFMKLL-------AMTPIGKETFFINNDKQKMNATQFS 270
                  +  K      V L    + +L       A T +  +  F  N K        S
Sbjct: 266 RRWDIPGQRTKNHRPHVVPLSSAVISILHYHRSLQASTNMQTDLVFTTNGKAVFAGWSKS 325

Query: 271 IWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ----AETYTKG- 325
              +     A  +     +R+  AT + + G   H + +     +       A  Y +  
Sbjct: 326 K-ERLDRRVASADWQLRDLRRSFATHANELGYEPHVIESALNHVSGSAKRGIAGVYNRAT 384

Query: 326 --ADRIRLGIKNSRRI 339
               RIRL  + SR +
Sbjct: 385 YIRQRIRLIQRWSRHL 400


>gi|260464185|ref|ZP_05812378.1| tyrosine recombinase XerC [Mesorhizobium opportunistum WSM2075]
 gi|259029988|gb|EEW31271.1| tyrosine recombinase XerC [Mesorhizobium opportunistum WSM2075]
          Length = 312

 Score = 80.8 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 45/279 (16%), Positives = 86/279 (30%), Gaps = 30/279 (10%)

Query: 82  AHWGSLAVNSRISFESYFDQIIRKS--------GDFDYRKITTKHIRSGVESRKHTPSSA 133
           A    L+  +  ++E    Q +           G  D   +    +R  + +R++  + A
Sbjct: 24  ARERRLSPETVEAYERDTRQFLHFLTGHCGGSPGISDIANLRPADLRGFLAARRNAGAGA 83

Query: 134 IQF---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ-------QFK 183
                 L  +R L ++  R+         ++  P++     +P T  D +       Q  
Sbjct: 84  RTLGRGLAGIRSLLRFLERRGLANAAGAAALRAPRQPKSLPKPLTASDAKHVVSVEGQLA 143

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGF 241
                 ++       L  SGLR S++       L  + +     T K G    V +    
Sbjct: 144 EEPWIAARNAAVLTLLYGSGLRISEALGLAGADLASEADTVLRVTGKGGKTRLVPVLPVA 203

Query: 242 MKLLAMTPI-------GKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKF 292
           ++ +A            K   F       +N            +   +    + H +R  
Sbjct: 204 LRAIAEYRRLCPHHLDPKGLLFRGARGGPLNPAIIQRDMAKLRSALNLPDTATPHALRHS 263

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            AT     G     +    G  ++   + YT G D  RL
Sbjct: 264 FATHLLGRGGDLRTIQELLGHASLSTTQIYT-GVDTTRL 301


>gi|238064005|ref|ZP_04608714.1| phage integrase family site-specific recombinase [Micromonospora
           sp. ATCC 39149]
 gi|237885816|gb|EEP74644.1| phage integrase family site-specific recombinase [Micromonospora
           sp. ATCC 39149]
          Length = 306

 Score = 80.8 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 48/279 (17%), Positives = 86/279 (30%), Gaps = 29/279 (10%)

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK-----------ITTK 117
            T    + ++ +S   G+    +R ++     Q+ R  G+                +T  
Sbjct: 15  RTWAGFLRDWDRSLRTGNYPATTRYNYLLAAAQLGRYLGEHSPDPDAEDAADDPCVVTRA 74

Query: 118 HIRSGVESRKHTPSS--AIQFLTSMRVLFKWA-VRQEYVAINPCLSVERPKRKTEGIRPW 174
           H+ +       T S+  A+     ++  FKW  V ++ +  +P   V +PK   + I   
Sbjct: 75  HVEAFQAWMIDTRSASTALNKHKGLQQFFKWLLVDEQAIDRSPMERVRQPKTLRKLIPVM 134

Query: 175 TKEDMQQFKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
             ED  +             +          +G R S+     V  +  N  S+     G
Sbjct: 135 RDEDTGKLLDACRGKGFANMRDEALIRLYCNTGARLSEVGNLLVADVDLNTESVHFHGKG 194

Query: 231 TI-ITVELPDGFMKLLAMTPIGKE---------TFFINNDKQKMNATQFSIWFKAKATKA 280
                V       + L+     ++          +        +      I  K     A
Sbjct: 195 AKDRRVRFGPKTARALSRYLRARDKHKGAALPQLWLAERGGAPLTPNGIKILLKRLGKAA 254

Query: 281 GV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           GV +  AH  R   A     AG    +LM   GW + D 
Sbjct: 255 GVPDVHAHRWRHNFAHEWKRAGGDTGDLMLLLGWASDDM 293


>gi|257091080|ref|ZP_05585441.1| predicted protein [Enterococcus faecalis CH188]
 gi|312904393|ref|ZP_07763554.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0635]
 gi|256999892|gb|EEU86412.1| predicted protein [Enterococcus faecalis CH188]
 gi|310632292|gb|EFQ15575.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0635]
          Length = 393

 Score = 80.8 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 51/324 (15%), Positives = 99/324 (30%), Gaps = 60/324 (18%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132
           WL  EY+K+    +     R   +     I+   G     ++T K ++  V         
Sbjct: 77  WL-DEYKKTVRESTFIATERRMKK----HILPTFGKMRLERLTVKIVQKSVNEWYKKNEM 131

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR-----KTEGIRPWTKEDMQQFKSFWS 187
               L+    +  +AV  E +  NP   + +P       K    + +TK++++ F +   
Sbjct: 132 GKVLLSYASRVCDYAVGLEIIDSNPFKKITKPSSLKKVEKNTKRKFYTKDELEHFLNTAD 191

Query: 188 EGSQPR---------------LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT--- 229
             +                    F  L ++G+R  ++       +      +   KT   
Sbjct: 192 SIANQAKEESLVLKYYADLDCAIFRLLSFTGIRVGEALALNWNDIDIKEQVVNINKTTAI 251

Query: 230 ---GTIITVELPD----------------------GFMKLLAMTPIGKETFFINNDKQKM 264
              G  I                                L+       +  F   D    
Sbjct: 252 STNGLTINDPKTPNSIRKISFDNKTAYILKKWKLRQREALMKKGGFKTQLIFTKIDGTMF 311

Query: 265 NATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADA-GATAHELMATYGWKTVDQA-E 320
            +       K  A KA ++ S   HG R   AT+  ++    +  +    G  ++    +
Sbjct: 312 RSQDIYQRSKRLAEKANLH-SIGCHGFRHTHATLLFESDNVRSKIIQERLGHSSLQITMD 370

Query: 321 TYTKGADRIRLGIKNSRRISSVVD 344
           TYT  +D   +  + +   SS V+
Sbjct: 371 TYTHVSD--EVTKEATDAFSSYVN 392


>gi|197336974|ref|YP_002158308.1| site-specific recombinase IntIA [Vibrio fischeri MJ11]
 gi|197314226|gb|ACH63675.1| site-specific recombinase IntIA [Vibrio fischeri MJ11]
          Length = 327

 Score = 80.8 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 46/302 (15%), Positives = 88/302 (29%), Gaps = 59/302 (19%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----SRKHTPS 131
            + R      +LA N+   +  +    IR +      +I    I   +E     +  +P+
Sbjct: 16  DQLRIFIRTRALAYNTEKQYIYWISCFIRHNNYTSKDEINAFDIPDYLEHLVVKQNVSPN 75

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           +    L ++  L +  ++Q     N  L  +R K+ T+    ++    +           
Sbjct: 76  TQKTALNALIFLCREYLQQSV--DN--LEFKRSKKATKLPTVFS--HSEAISVINELNHP 129

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTGTIITVELPD----GFMKLL 245
            +L  + +  SGLR +++ R  V  +       +I+  K     T  LP+         L
Sbjct: 130 TKLIAQLMYGSGLRINEALRLRVDDIDLIHKTITIRNGKGNKDRTTVLPEIIISELKTQL 189

Query: 246 AMTP---------IGKETFFINN--------------------------------DKQKM 264
           A               E +  N                                  +  M
Sbjct: 190 AFVKQQHKVDAINGDDEVYLPNAIAKKYPHRAKSYGWQYVFPSKQISKDPRSGQRRRHHM 249

Query: 265 NATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
                         K  ++K  S+H  R   AT   + G     +    G   +   + Y
Sbjct: 250 LDRSVQKQVTNAIKKLEIDKKASSHTFRHSFATRILERGGDLRTIQELLGHSDIKTTQIY 309

Query: 323 TK 324
           T 
Sbjct: 310 TH 311


>gi|126699683|ref|YP_001088580.1| integrase [Clostridium difficile 630]
 gi|115251120|emb|CAJ68951.1| putative integrase [Clostridium difficile]
          Length = 370

 Score = 80.8 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 43/292 (14%), Positives = 97/292 (33%), Gaps = 37/292 (12%)

Query: 86  SLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTSMRV 142
           ++++ +  ++ S   + I    G +  + +   HI++ ++    K  P S    +  +++
Sbjct: 78  NISLATYNNYVSICKNYINPSIGKYKIQDLHPVHIQNYIDKLSYKLNPQSIKIHINILKL 137

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202
             K A R + +  N   S++ P+ K      + +E M +        ++  L     +  
Sbjct: 138 AIKRAYRLKLIKENVMDSIKAPRYKKFKNEIYDREQMIKLLDLAK-NTEMELPINLAIGL 196

Query: 203 GLRCSDSCRAGVQHLQ---------------NNIFSIKTQKTGTIIT-VELPDGFMKLLA 246
           GLR S+       ++                N    +K  KT + +  +  P   M LL 
Sbjct: 197 GLRISEVLGLTWDNIDFEENTITVNKITSRINGSVILKEPKTESSVRKISSPKELMSLLK 256

Query: 247 MTPIGKETFFINNDKQ-------------KMNATQFSIWFKAKATKAGVNK-SAHGVRKF 292
              I +    + +  +              +     S  FK    K  +     H +R  
Sbjct: 257 EYKIKQNKNLLKSSIRNNNNLLFFNKKCEPIAEDVMSKKFKRFLEKNELPHIRFHDLRHS 316

Query: 293 SATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVV 343
             T+  ++      +    G   +      Y+       +  + S +IS  +
Sbjct: 317 HVTLLINSKVPIKVISERVGHSNISTTLSVYSHVL--KEMDKEASDKISESL 366


>gi|84687547|ref|ZP_01015423.1| Phage integrase [Maritimibacter alkaliphilus HTCC2654]
 gi|84664456|gb|EAQ10944.1| Phage integrase [Rhodobacterales bacterium HTCC2654]
          Length = 360

 Score = 80.8 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/281 (14%), Positives = 88/281 (31%), Gaps = 21/281 (7%)

Query: 48  MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG 107
           + A   +    + + + R    TL+     Y         + +++    +  +  +    
Sbjct: 74  LRAEHATGAVAQRLAASRIP--TLRDATDTYLARPKLR--SEHNKNQVRAQMENKLTDWL 129

Query: 108 DFDYRKITTKHIRSGVESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
           D    +IT     +           +A   L S R ++  A R   +   P +++E    
Sbjct: 130 DLRLDEITKADCVAMHARLGADGERAANHVLKSFRSIYNHARRVHDLPECPTMAIEWFPE 189

Query: 167 KTEGIRPWTKEDMQQFKSFWS--EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
              G      +D+  +K      E    R  + FLL +GLR S++       +  +   +
Sbjct: 190 PASGKII---DDLDAWKEAVDGLENDVHRAFYRFLLLTGLRLSEALSLRWDQVHADHLHL 246

Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284
              K G    + L      +L      +  +     +  ++                +  
Sbjct: 247 PLTKNGRPFDLPLLAEHHGILQPMQAYRSDYVFPGTRHALHLKSPER----------IAW 296

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
           SAH  R+  AT++A++G     +               Y K
Sbjct: 297 SAHAHRRTFATVAAESGLWEETIGRLLNHTPQSVTGAHYVK 337


>gi|331007978|ref|ZP_08331026.1| Integron integrase IntI4 [gamma proteobacterium IMCC1989]
 gi|330418212|gb|EGG92830.1| Integron integrase IntI4 [gamma proteobacterium IMCC1989]
          Length = 323

 Score = 80.8 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/298 (13%), Positives = 83/298 (27%), Gaps = 59/298 (19%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHTPSSAIQFLTSM 140
              +  +  S+  +    I         ++        +      R  + S+    L ++
Sbjct: 17  RRYSKRTISSYIYWIKAFIHFHDKRHPSELGDADAARFLTYLAVERTVSSSTQRTALNAL 76

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200
             L+   + +   +        R KR+ +     ++E+++   S      + +LA   L 
Sbjct: 77  AFLYNRFLEKPLGS---MAEFTRSKRQAKLPIVLSREEVKVLFSHIDP--KYKLAVGLLY 131

Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLAMTPIGKETFFI- 257
            SGLR  +  R  V  +  +   I+    K        L    +  +         F   
Sbjct: 132 GSGLRRIECLRLRVNDVDFSHLQIRIWNGKGFKHRLTTLAPELIPAIKCQIERANAFLQE 191

Query: 258 ---------------------------------------------NNDKQKMNATQFSIW 272
                                                        N  +  M+ +  +  
Sbjct: 192 DITYPEYCGVWLPDALARKYRNASKELGWQYLFPSYRLSIEPGTSNIRRHHMDESTLNKV 251

Query: 273 FKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
             +   +A + K  S+H +R   AT    +GA    +    G   V   E YT   ++
Sbjct: 252 IASARKRAKLGKPVSSHTLRHSFATHLLQSGADIRTVQQQLGHSDVKTTEIYTHVLNQ 309


>gi|313906409|ref|ZP_07839747.1| integrase family protein [Eubacterium cellulosolvens 6]
 gi|313468744|gb|EFR64108.1| integrase family protein [Eubacterium cellulosolvens 6]
          Length = 354

 Score = 80.8 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/241 (16%), Positives = 79/241 (32%), Gaps = 31/241 (12%)

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG-IRPWTKEDMQQF----- 182
           +PS      +S+ V+F W    +Y+  +P       + K E  I      ++++      
Sbjct: 108 SPSRLKAIKSSLSVIFSWLYAHDYIPKDPTAGSMTIRVKKEKMINTLEMREVKKLVNTVE 167

Query: 183 ----------KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGT 231
                     K       +        L +G+R S+     ++ +  +      T+K G 
Sbjct: 168 NSSLSTELKSKRAKKSAYRDTAIILLFLNTGIRISELVGLNLKDIDFDESCIYVTRKGGK 227

Query: 232 IITVELPDGFMKLLA----------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281
              V   D     L           +T   ++  FI+   ++M         +  + +  
Sbjct: 228 PDQVYFNDETAAALMDYIQLERGTYVTEECEDALFISAFHKRMAVRSVQEMIRKYSRETL 287

Query: 282 VNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338
            NK   + H  RK   ++  +A +    + A  G +++    TY     + R      R 
Sbjct: 288 PNKKKVTGHVFRKTYGSLLYEA-SDLKNVQAVLGHESIVTTSTYYVNESKNRKKTSGRRN 346

Query: 339 I 339
           I
Sbjct: 347 I 347


>gi|15645299|ref|NP_207469.1| integrase/recombinase (xerC) [Helicobacter pylori 26695]
 gi|2313795|gb|AAD07734.1| integrase/recombinase (xerC) [Helicobacter pylori 26695]
          Length = 362

 Score = 80.8 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/174 (14%), Positives = 64/174 (36%), Gaps = 15/174 (8%)

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIIT 234
           E + + +      ++ RL  + ++++G+R +++ +  ++    +N  ++I  +  G    
Sbjct: 185 ESIDKIEMSAKVRARNRLLIKIIVFTGMRSNEALQLKIKDFTLENGCYTILIKGKGDKYR 244

Query: 235 VELPDG------FMKLL---AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284
             +           + L    + P+  +  F N     +         +     AG+ + 
Sbjct: 245 AVMLKAFHIESLLKEWLIERELYPVKNDLLFCNQKGSALTQAYLYKQVERIINFAGLRRE 304

Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
              AH +R   AT+          +    G  +++ +  YT   D+ RL    S
Sbjct: 305 KNGAHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTH-FDKQRLEEAAS 357


>gi|300899506|ref|ZP_07117748.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 198-1]
 gi|300922907|ref|ZP_07138984.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 182-1]
 gi|300947236|ref|ZP_07161442.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 116-1]
 gi|300356911|gb|EFJ72781.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 198-1]
 gi|300420785|gb|EFK04096.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 182-1]
 gi|300453136|gb|EFK16756.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 116-1]
          Length = 336

 Score = 80.8 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 45/307 (14%), Positives = 101/307 (32%), Gaps = 23/307 (7%)

Query: 26  RKGHGRRIRLPYPHESTFI--PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAH 83
           R   G+RIR  +  ++  +    Y  A       ++     R    TL  L+  + K  H
Sbjct: 28  RGRDGKRIRRKFERKAEALAFERYTIA----NASQKEWGGQRADRRTLSELLDIWWK-YH 82

Query: 84  WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK---HIRSGVESRKHTPSSAIQFLTSM 140
             +    ++    ++  + I   GD    +++ +     RS       + ++  + +  +
Sbjct: 83  GQNHEHGTKEF--NHLLKTISGIGDIPVSRMSKRALMDYRSMRLRDGISAATINRDMYRL 140

Query: 141 RVLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199
             +F   ++  E+   +P   +         +    K ++++  +  +      L     
Sbjct: 141 SGMFTKLIQLDEFSGQHPIHGLPPLAEANPEMTFLEKAEIEKLLNVLA--GDDLLVALLC 198

Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN 259
           L +G R ++        + N   +    K G   TV + +   K +      K       
Sbjct: 199 LSTGGRWTEVATLKPAQITNCRVTFLKTKNGKKRTVPISEELEKKVKEEASAKLF----- 253

Query: 260 DKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
              K++  +F    +        N++ H +R   A+     G     L    G  ++ Q 
Sbjct: 254 ---KVDYEKFCGILRRVKPDIPPNQATHILRHTFASHFMMNGGNIIALQQILGHASIQQT 310

Query: 320 ETYTKGA 326
             Y   A
Sbjct: 311 MAYAHLA 317


>gi|295099169|emb|CBK88258.1| Site-specific recombinase XerD [Eubacterium cylindroides T2-87]
          Length = 410

 Score = 80.8 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 59/384 (15%), Positives = 112/384 (29%), Gaps = 74/384 (19%)

Query: 6   RLPPFVTKERTRHGKIIYY--FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63
           R+P +   +   +G   Y        G+R+ L            M+AL           S
Sbjct: 7   RIPRY--SKVQINGHEYYKTDIEDADGKRVILYGKTREEVYDKEMAALEQIDNATFRRKS 64

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISF-ESYFDQIIRKSGDFDYRKITTKHIRSG 122
           P       KWL+ +   S H   +   + I +       II++ G+     +T   I+  
Sbjct: 65  PTVAEYCEKWLLMQ---SVH---IRATTLIDYTSKVRRHIIKELGEKRMADVTLDDIQVA 118

Query: 123 VESRKHTPSSAIQFLTSM-RVLFKWAVRQEYVAINPC--LSVERPKRKTEGIRPWTKEDM 179
           +       +S  + +  + + +F+ A     +  NP   L  +      E  +  T E +
Sbjct: 119 LVPVSKKSASVYKSVVILYKSIFRAAKESHVIDTNPTIYLEAKGGGVPQEERQALTDEQV 178

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI------------------ 221
           ++       G  P +     LY+GLR  +        +  +                   
Sbjct: 179 ERLLD-AIRGLPPYVFVMIGLYAGLRREEILALQWDSVYLDTDAPYLTVRRAWHTEHNRP 237

Query: 222 FSIKTQKTG-TIITVELPDGFMKLLAMTPIG--KETFFINNDKQKMNATQFSIWF----- 273
             +   KT      + LPD   + L         +    N D + ++ TQF   +     
Sbjct: 238 VILTELKTKAAERNIPLPDRLAECLKAAKKKSTSDYVIANQDGEPLSYTQFKRLWQYIVT 297

Query: 274 ---KAKATKAGVNK-----------------------------SAHGVRKFSATISADAG 301
              K +  +  V+                              + H +R    T    A 
Sbjct: 298 RTAKPRIARKLVDGKYVKYMLYPKLGEKARNNGHVVYSLDFEVTPHMLRHTYITNLIHAS 357

Query: 302 ATAHELMATYGWKTVDQA-ETYTK 324
                +    G ++     + Y K
Sbjct: 358 VDPKTVQYLAGHESSKITMDIYAK 381


>gi|261251522|ref|ZP_05944096.1| probable bacteriophage integrase [Vibrio orientalis CIP 102891]
 gi|260938395|gb|EEX94383.1| probable bacteriophage integrase [Vibrio orientalis CIP 102891]
          Length = 347

 Score = 80.8 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 50/320 (15%), Positives = 99/320 (30%), Gaps = 30/320 (9%)

Query: 24  YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAH 83
           Y +   G+RIR  +  +   + A+          + ++   +K   TL+ L+  + K   
Sbjct: 19  YPQGRAGKRIRKRFATKGEAL-AFEKFTMAEVDDKPWLG-EKKDLRTLQDLVELWYK--- 73

Query: 84  WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT-------------P 130
                + S          I+ + G+    K T K       +RK                
Sbjct: 74  LHGQHLKSAEKVYPRLCSIVEELGNPFAIKFTAKDFVHWRSTRKAKHRHIGPDTGKFISA 133

Query: 131 SSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            +    L  MR +F        +   NP  SV+        +   + ED+       ++ 
Sbjct: 134 PTNNLDLRYMRAVFNELTSLGEWTHPNPLASVKSIPVTESEMGFLSNEDITALFERITKS 193

Query: 190 SQPR---LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF-MKLL 245
            + +   L  +  L +G R S++    +  +     +    K+    TV + +    +L+
Sbjct: 194 KRAKEFELVCKICLSTGARISEANNLRLPQITKYKITFIDTKSKKNRTVPITEKLYNELI 253

Query: 246 AMTPIG-KETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATA 304
                G K+  F      K      +             ++ H  R   A+   +AG   
Sbjct: 254 EFERTGEKDRLF------KGCHHGIAYIINQTFPDLPEGQNTHVFRHTFASRFMEAGGNI 307

Query: 305 HELMATYGWKTVDQAETYTK 324
             L    G   +     Y+ 
Sbjct: 308 LVLQKILGHSDIKMTMRYSH 327


>gi|78776978|ref|YP_393293.1| integron integrase [Sulfurimonas denitrificans DSM 1251]
 gi|78497518|gb|ABB44058.1| Integron integrase [Sulfurimonas denitrificans DSM 1251]
          Length = 320

 Score = 80.8 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/305 (13%), Positives = 95/305 (31%), Gaps = 61/305 (20%)

Query: 83  HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHTPSSAIQFLT 138
            +   ++++  ++  +    I          +  K I   +     ++K +P++  Q  +
Sbjct: 14  RFKHYSISTEKTYVFWIKHYIFYHQKQHPVNLGKKEIEDFLTFLAVTKKVSPTTQNQAFS 73

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP--WTKEDMQQFKSFWSEGSQPRLAF 196
           ++  L++  +  E    N    V+  + +     P   TK+++Q      +     +L  
Sbjct: 74  ALLFLYREVLDIEISTWN----VQALRAQQRKHIPVVLTKDEVQNI--ILNMNGIYQLMV 127

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLLAMTPIG--- 251
           + +   GLR S+     ++ +        +   K+    T+ LP      L +       
Sbjct: 128 KLMYGCGLRMSEVQNIRIKDIDFGFDKIYVWDGKSLKDRTLPLPMKIKDELKIQVEKVRE 187

Query: 252 ----------KETFFINNDKQKMNATQF-SIW---------------------------- 272
                        +     ++K    +F + W                            
Sbjct: 188 LHQKDLKDGYGSVYIPYAFERKFPKAKFETKWQYIFPMNTIATDPRSGERRRHHILDATL 247

Query: 273 ---FKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
               K   TK+ ++K  ++H  R   AT    AG     +    G K+V+    YT    
Sbjct: 248 SRNIKQAVTKSNIDKRVTSHIFRHSYATHLLQAGIDLRSIQELLGHKSVETTMIYTHVVS 307

Query: 328 RIRLG 332
            +   
Sbjct: 308 EMNKA 312


>gi|256157943|ref|ZP_05455861.1| hypothetical protein BcetM4_03718 [Brucella ceti M490/95/1]
 gi|256253098|ref|ZP_05458634.1| hypothetical protein BcetB_02097 [Brucella ceti B1/94]
 gi|261220201|ref|ZP_05934482.1| phage integrase [Brucella ceti B1/94]
 gi|265996452|ref|ZP_06109009.1| phage integrase [Brucella ceti M490/95/1]
 gi|260918785|gb|EEX85438.1| phage integrase [Brucella ceti B1/94]
 gi|262550749|gb|EEZ06910.1| phage integrase [Brucella ceti M490/95/1]
          Length = 402

 Score = 80.8 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 48/312 (15%), Positives = 106/312 (33%), Gaps = 28/312 (8%)

Query: 49  SALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSG 107
           +A      ++    +  K   T      ++ +      ++  +R      +++ +  K G
Sbjct: 77  AAGKSPAKEKARDKARVKDAETFGAWAEKWLRGYQ---MSETTRNMRRGTYERDLKPKFG 133

Query: 108 DFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165
           +    +IT + +R+  ++   +  PS+A+     M ++F+WA+ +     NP   V    
Sbjct: 134 NRKLIEITHEDLRALTDAIVEQGRPSTAVVCREIMMLVFRWAIERGQKVENPADLVRPST 193

Query: 166 RKT--EGIRPWTKEDMQQFKSFWS-EGSQP--RLAFEFLLYSGLRCSDSCRAGVQHL--- 217
                   R  T E++     +    G+ P  R A + LL + +R S+   A    +   
Sbjct: 194 IAKFEPRDRALTPEEIGLMYQYMERIGTTPSIRAAAKLLLLTMVRKSELTNATWSEINFI 253

Query: 218 QNNI-FSIKTQKTGTIITVELPDGFMKLLAMTPI---GKETFFINNDKQ--KMNATQFSI 271
                 S +  K      V L    +++         G E    +       M++   + 
Sbjct: 254 DALWTISKERMKRRNPHLVFLSRQVLEIFTALKTFAGGSEYVLPSRYDSDLPMSSATLNQ 313

Query: 272 WFKAKATKAGVNKS------AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
                   A            H +R+ ++T+  +AG     +      +       Y K 
Sbjct: 314 VLTLTYRLAQKEGQSLGKFGPHDLRRTASTLLHEAGYNTDWIEKCLAHEQKGVRAVYNKA 373

Query: 326 --ADRIRLGIKN 335
              D+ R  +++
Sbjct: 374 EYRDQRRAMLQD 385


>gi|260907655|ref|ZP_05915977.1| phage integrase family protein [Brevibacterium linens BL2]
          Length = 657

 Score = 80.8 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/263 (14%), Positives = 73/263 (27%), Gaps = 42/263 (15%)

Query: 92  RISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQE 151
           R   E +   ++    D D + I+                   + + ++           
Sbjct: 269 RRHIEPWLSSLLDTVSDKDGQPISIGD--------------RNRRVVAVTTFLTDITEWG 314

Query: 152 YVAINPCLSV----ERPKRKTEGIRPWTKED---MQQFKSFWSEGSQPRLAFEFLLYSGL 204
           +  + P   V    + PK      R    +    +Q+  +         LA       GL
Sbjct: 315 W-DVAPARKVIFRDDIPKLPQVLPRYLPIDADRRLQEALTDHPTNELAALALRVQRACGL 373

Query: 205 RCSDSCRAGVQHLQ-----NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET----- 254
           R  +     +  +           I   K  T   V L    + L+      +       
Sbjct: 374 RIGELLDLELDCVHEIDGNGAWLKIPLGKMATERMVPLDVETLDLIDRITQIRSHGRPLP 433

Query: 255 ---------FFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATA 304
                    F      +++            A  AG+   ++H +R   AT   +AG + 
Sbjct: 434 HPRYRRSAQFLFTYLGRRLTQQGVRAELDHAADIAGLEHVTSHQLRHTYATALVNAGVSL 493

Query: 305 HELMATYGWKTVDQAETYTKGAD 327
             LMA  G  + + +  Y +  D
Sbjct: 494 QALMALLGHVSAEMSLRYGRLFD 516


>gi|76788634|ref|YP_330649.1| phage integrase family site specific recombinase [Streptococcus
           agalactiae A909]
 gi|77405139|ref|ZP_00782238.1| integrase/recombinase, phage integrase family, putative
           [Streptococcus agalactiae H36B]
 gi|76563691|gb|ABA46275.1| site-specific recombinase, phage integrase family [Streptococcus
           agalactiae A909]
 gi|77176282|gb|EAO79052.1| integrase/recombinase, phage integrase family, putative
           [Streptococcus agalactiae H36B]
          Length = 421

 Score = 80.8 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 68/364 (18%), Positives = 121/364 (33%), Gaps = 70/364 (19%)

Query: 49  SALTGSTPKREYINSPRKK---PTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIR 104
            A+  +  + E   S R+K     TL+ L  E+ KS      + N+     SY D  II 
Sbjct: 56  RAIIQARLEFEKNGSTREKVIVIDTLEDLAEEWFKSYKTWVNSHNTLNRVRSYLDNYIIP 115

Query: 105 KSGDFDYRKITTKHIRSGVE--------------SRKHTPSSAI--QFLTSMRVLFKWAV 148
           K GD+   KI +  I+  +                R    S+      +  ++ +F + +
Sbjct: 116 KFGDYKPDKIESADIQLWLNDLAKKSKESIESGIKRADKGSAKDFGAVIHKLKDIFDYGI 175

Query: 149 RQEYVAINPCLSVE---RPKRKTEGIRPWTKEDMQQFKSFWS------EGSQPRLAFEFL 199
               +  NP  +V+   +PK   + I     + +  + ++           + +L    L
Sbjct: 176 TNYGLITNPVSTVKIPPKPKSNKQRIMVLHDDGLVIWLNYLESLDNNRANRRFKLICNTL 235

Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-------------GTII------------T 234
           L S LR ++     +  L     SI   KT             G +I            +
Sbjct: 236 LASALRINELLALTIDDLDFENSSINVSKTLMWKTANKKDGTKGEVICKATPKTDAGNRS 295

Query: 235 VELPDGFMKLLA----------MTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGV 282
           V +P   ++ L                  T   F       M         K +    G+
Sbjct: 296 VPVPPPIIEKLRDFHHEMNKYLELHNRHRTKLIFPTIYGNYMCDRNERTTLKKRLVGLGL 355

Query: 283 -NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNS--RR 338
            N   H  R   A++  +AG    EL    G K++    +TY + A + +L        +
Sbjct: 356 PNYGFHLFRHTHASMLLNAGTNWKELQVRMGHKSISTTMDTYAELAPQRKLEAVGIYLEK 415

Query: 339 ISSV 342
           I+ +
Sbjct: 416 IAEL 419


>gi|302346947|ref|YP_003815245.1| site-specific recombinase, phage integrase family [Prevotella
           melaninogenica ATCC 25845]
 gi|302150881|gb|ADK97142.1| site-specific recombinase, phage integrase family [Prevotella
           melaninogenica ATCC 25845]
          Length = 407

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 75/213 (35%), Gaps = 22/213 (10%)

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQQFKSFWSEG 189
           ++  + L +++ +  +A  +  +  +P  + + R +    G    T+E++ +      + 
Sbjct: 182 NTTTKKLRNLKTVVNYARNRGLIMHDPFANHKLRYELVDRGY--LTEEEVLRIMKKHFDI 239

Query: 190 SQPRL---AFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDGFM 242
            +  L    F F  ++GL   D        +           K  KT     V L D  +
Sbjct: 240 ERLELVKNIFIFSCFTGLAYIDVYNLTYDKIVTVEDRQWLITKRYKTSVDENVMLLDIPL 299

Query: 243 KLLAMTPIGKETFFINNDKQK----MNATQFSIWFKAKATKAGVNK--SAHGVRKFSATI 296
            ++         + IN    K    M+  + + + K  A   G+ K  + H  R   AT+
Sbjct: 300 AIIRK------YYDINRKGGKVFPMMSNQRINSYLKEIADLCGIKKNLTFHMARHTFATM 353

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           S   G     +    G   +   + Y +  ++ 
Sbjct: 354 SISKGVPMESVSKMLGHTNIRITQIYARITNKK 386


>gi|289628243|ref|ZP_06461197.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. aesculi str. NCPPB3681]
 gi|330866264|gb|EGH00973.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. aesculi str. 0893_23]
          Length = 404

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 51/326 (15%), Positives = 92/326 (28%), Gaps = 49/326 (15%)

Query: 46  AYMS-ALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR 104
            Y++ A     P             TL+  I E      + +       +  +  D    
Sbjct: 71  RYLADAHEHGEPLAITQGRRETTTPTLRAFIDETY-MPWFRAHHRGEEKTLYN-LDNNFD 128

Query: 105 KSGDFDYRKITTKHI---RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV 161
                    IT + +   R+G  +  +  S+A + + S+  +F  AV  EY+  +P   +
Sbjct: 129 TIMHQRLDAITGRDLEQLRTGWLNAGNKASTANRKMGSISGVFSRAVDWEYLPSSPLDKI 188

Query: 162 ERPKRKTEG-IRPWTKEDMQQFKSFWSEGSQPRLAFE----------------------- 197
           +  K  T+G +R  +K++    K+        R   E                       
Sbjct: 189 KPLKVDTKGQVRYLSKDETLNLKNALEVREH-RACLERDSANKWRAERNKALFPDLTKLA 247

Query: 198 ----------FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ----KTGTIITVELPDGFMK 243
                       L +G+R  +      Q +  +   I       KT     + +      
Sbjct: 248 FTDHLKPMVLVSLNTGMRRGELFGLTWQAINFDRKVITVGGDTAKTSETRHIPMNTETFD 307

Query: 244 LLAMTPIGKET---FFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADA 300
            L             F   D  +M     S+W K            H +R   A+    A
Sbjct: 308 TLKAWSKQSGASVFVFPGLDGGRM-EDVKSVWLKLLQEACITGFRWHDMRHDFASRLVMA 366

Query: 301 GATAHELMATYGWKTVDQAETYTKGA 326
           G   + +    G   +     Y   A
Sbjct: 367 GVPLNTVRDLLGHTDIKMTLRYAHLA 392


>gi|255016381|ref|ZP_05288507.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_7]
          Length = 387

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 46/272 (16%), Positives = 98/272 (36%), Gaps = 29/272 (10%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQ------IIRKSGDFDYRKITTK---HIRSGVESR 126
            +Y K    G  A  + + + + +        I     D   +++T          + + 
Sbjct: 94  EDYEKQVEAGMKAKGTLLKYRTVYKHMQEFLDIRYHVKDIALKELTPAFISDFEMFLRTD 153

Query: 127 KHTPSSAIQFLTS-MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           KH  ++ +      +R +   A+  E++  +P    E  K +T      TK++++     
Sbjct: 154 KHCCTNTVWLYVCPLRTMVFIAINNEWLTRDPFREYEIKKEETT-RSFLTKDEIRLLMEG 212

Query: 186 WSEGSQPRLAFEFLLY---SGLRCSDSCRAGVQHLQN-----NIFSIKTQKTGTIITVEL 237
             + ++  L  +  L+   +GL  +D      ++++         +I  QKTG +  + L
Sbjct: 213 KLKNAKQELYRDLYLFCAFTGLSFADMRNLTEENIRTYFDEHEWININRQKTGVVSNIRL 272

Query: 238 PDGFMKLL--AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFS 293
            D   +++       G    F                 +A A + G+ K  + H  R  +
Sbjct: 273 LDIANRIIGKYRGLCGDGRIFPVPH-----YNTCLAGIRAVAKRCGITKHITWHQSRHTA 327

Query: 294 AT-ISADAGATAHELMATYGWKTVDQAETYTK 324
           AT I    G     + +  G K++   + Y K
Sbjct: 328 ATTIFLSNGVPIETVSSMLGHKSIKTTQIYAK 359


>gi|281422020|ref|ZP_06253019.1| putative integrase/recombinase XerD [Prevotella copri DSM 18205]
 gi|281403809|gb|EFB34489.1| putative integrase/recombinase XerD [Prevotella copri DSM 18205]
          Length = 298

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 57/178 (32%), Gaps = 16/178 (8%)

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--Q 218
           V +PKR     R  ++E + +     S   +  LA   +    LR  ++CR     +   
Sbjct: 108 VRKPKR---LPRVLSQEQIARLLRNCSLYDKTLLA--IIYDCALRVGEACRLRWDDICFD 162

Query: 219 NNIFSIKTQKTGTIITVELPDGFMKLLAM--TPIGKETFFINNDK-----QKMNATQFSI 271
                +   K      V + D  + +L         + +   +       Q++      I
Sbjct: 163 RKKLFVFQGKGRKDRYVPISDQMLVVLKAYRKKYPSDDYVFKSHGSKTEPQRITPGYVRI 222

Query: 272 WFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
             K    +  ++ S   H +R  +AT   + G     +    G   +     Y   AD
Sbjct: 223 ILKNALARVVLDHSITIHDLRHSAATHLLENGENIVHVQKRLGHARLTTTMVYLHVAD 280


>gi|146312742|ref|YP_001177816.1| phage integrase family protein [Enterobacter sp. 638]
 gi|145319618|gb|ABP61765.1| phage integrase family protein [Enterobacter sp. 638]
          Length = 395

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 48/261 (18%), Positives = 93/261 (35%), Gaps = 24/261 (9%)

Query: 85  GSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKHTPS--SAIQFLTSMR 141
            S+  +         D+ +    G+   ++I  + I   +E  K   +  +  + +  + 
Sbjct: 120 KSVTPDYAKDIWRSLDKDVFPAIGEIPVQEIKARTIIEALEPIKARGALETVRRLVQRIN 179

Query: 142 VLFKWAVRQEYVAINPCLSV----ERPKRKTEGIRPWTKEDMQQFKS---FWSEGSQPRL 194
            +  +AV    +  NP   V    ERPK++         E++ +        +     R 
Sbjct: 180 EIMIYAVNTGLLDANPASGVGMAFERPKKQNML--TLRPEELPKLMRSIGMSNLSVPTRC 237

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIITVELPDGFMKLLAM-TP 249
             E  L + +R S++  A    +  +    K      K      V L    +++L + TP
Sbjct: 238 LIELQLLTLVRPSEASGARWAEIDIDAKLWKIPAERMKAKREHIVPLSPQALEILEIMTP 297

Query: 250 IG--KETFFI--NNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAH 305
           I   +E  F   N+ KQ MN+   +   K      G    AHG+R  ++T   + G    
Sbjct: 298 ISAHREYVFPSRNDPKQPMNSQTANAAIKRIGY--GGRLVAHGLRSIASTAMNEEGFNPD 355

Query: 306 ELMATYGWKTVDQAET-YTKG 325
            + A       ++    Y + 
Sbjct: 356 VIEAALAHSDKNEVRRAYNRS 376


>gi|320186803|gb|EFW61524.1| integrase [Shigella flexneri CDC 796-83]
          Length = 423

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 44/314 (14%), Positives = 87/314 (27%), Gaps = 65/314 (20%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHIRSGVE---- 124
           T   L   + K      L  N+    +S    +            I    I +       
Sbjct: 94  TFGELCDIWTKIKE-TELTTNTMKKTKSQLKTLRIIICESTPISHIRYSDILNYRNELLH 152

Query: 125 ------------SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
                        +  T  +   ++  +  L ++A +  +++  P   V++ +R      
Sbjct: 153 GETLYLDNPRSNKKGRTVRTVDSYIALLCSLLRFAYQSGFISTKPFEGVKKLQRNRIKPD 212

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
           P +K +         +G    L  +F +YSGLR  +      + +      +  ++  TI
Sbjct: 213 PLSKTEFNALMES-EKGQSQNLW-KFAVYSGLRHGELAALAWEDVDFEKGIVNVRRNLTI 270

Query: 233 ITVELPDG----------FMKLLAMTP-----IGKE-----TFFINNDKQK--------- 263
           + +  P                L          G       TF+     +          
Sbjct: 271 LDMFGPPKTNAGIRTVTLLQPALEALKEQYKLTGHHRKSEITFYHREYGRTEKQKLHFVF 330

Query: 264 ------------MNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMA 309
                        + +     + A   +AG+ +    H  R   A     AGA    + +
Sbjct: 331 MPRVCNEKQKPYYSVSSLGARWNAAVKRAGIRRRNPYHT-RHTFACWLLTAGANPAFIAS 389

Query: 310 TYGWKTVDQA-ETY 322
             G +T     E Y
Sbjct: 390 QMGHETAQMVYEIY 403


>gi|317503724|ref|ZP_07961739.1| integrase [Prevotella salivae DSM 15606]
 gi|315665149|gb|EFV04801.1| integrase [Prevotella salivae DSM 15606]
          Length = 362

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 48/274 (17%), Positives = 94/274 (34%), Gaps = 26/274 (9%)

Query: 98  YFDQIIRKSG--DFDYRKITTKHIRSGV---ESRKHTPSSAIQFLTSMRVLFKWAVRQEY 152
              + I+  G  D + R IT +         + +    S+   +L  +  L   AV Q  
Sbjct: 80  MLCEFIKDLGSTDIEIRSITEELFEEYRFFLKKKGLKGSTINNYLCWLSRLMFRAVSQRI 139

Query: 153 VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WSEGSQPRLAFEFLLYSGLRCSDS 209
           +  NP    E  K + + IR  +K D+++  +     S+    R  F F  ++GL  +D 
Sbjct: 140 IRYNPFEHAEYEKVE-KAIRFLSKSDVKKLMAMKMWDSDAKLARRMFIFSCFTGLAIADM 198

Query: 210 CRAGVQHLQ---NNIFSIK--TQKTGTIITVELPDGFMKLL---AMTPIGKETFFINNDK 261
                 H++   +    I+   QKT     V L      ++         KE     N  
Sbjct: 199 EHLKFGHIKSAADGQMYIRKERQKTKVEFIVPLHPIVKTIIEQQRQLKAVKEESNNTNMD 258

Query: 262 QKM------NATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGW 313
            ++      + +  +          G+ +    H  R    T+   AG     +    G 
Sbjct: 259 NRLIFQPCCSRSVLAAKLSIVGKACGIKQRLCYHMGRHTFGTMCLSAGIPIESIAKMMGH 318

Query: 314 KTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
            ++   + Y +  D  ++     R I+    +++
Sbjct: 319 ASIASTQIYAQVTD-CKMSEDMDRLIAKHKCTNE 351


>gi|315638502|ref|ZP_07893679.1| phage integrase family site-specific recombinase [Campylobacter
           upsaliensis JV21]
 gi|315481493|gb|EFU72120.1| phage integrase family site-specific recombinase [Campylobacter
           upsaliensis JV21]
          Length = 355

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 41/291 (14%), Positives = 102/291 (35%), Gaps = 60/291 (20%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFE----SYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128
            LI E   S   G+L+  S+ ++     ++FD + R++ +     I   +++        
Sbjct: 102 ALIVEILASIT-GALSDASKKNYRIAVMNFFDFLNRQNEEDSKAHIFDINLK-------- 152

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
                            WA             ++ P          +++++++F      
Sbjct: 153 ----------------NWAGVSG------ARGIKLP-------EFMSEDELKKFLEAVDN 183

Query: 189 GS------QPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKT-QKTGTIITVELPD 239
                   + +L  + ++++G+R S++    ++ +  ++ ++ I+   K      V +  
Sbjct: 184 ADFKANTIRNKLIIKIIIFTGIRVSEALHIKLKDISEEDGLYHIRIHAKGNKYRLVMIKK 243

Query: 240 GFMKLLA-----MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRK 291
             +  L               F+N     +     S   +    KAG+ K    AH +R 
Sbjct: 244 ELISTLLDNVKINYLSQDSLLFVNKKGTPLTQAYVSRIVEQILFKAGIRKQKNGAHMLRH 303

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSRRISS 341
             AT+          +    G  +++ +  YT   +++++L  K +  +S 
Sbjct: 304 TFATLLYKKQKDLVLVQEALGHASLNTSRIYTHFDSEKLKLAAKVAEELSK 354


>gi|306818222|ref|ZP_07451953.1| phage integrase [Mobiluncus mulieris ATCC 35239]
 gi|304649186|gb|EFM46480.1| phage integrase [Mobiluncus mulieris ATCC 35239]
          Length = 266

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 42/255 (16%), Positives = 80/255 (31%), Gaps = 14/255 (5%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD-YRKITTKHIRSGVESRKH 128
           T     S Y +       +  +      Y   +   +G       +TT+ +   +     
Sbjct: 6   TWPGATSAYLRHLKAAGRSPGTIRIHRYYMGLL---AGIAPCPAHVTTERLEVWLSEHDW 62

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
            P +           FK+ VR+E V  +P L +          RP  +  ++   +   +
Sbjct: 63  QPETRRSAQGVASTFFKYLVREEIVKKDPTLGLAPVHVPDGVPRPAPEAAVRHALANAPD 122

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG-FMKLLAM 247
            +   L   F  + GLR  +  +         +  +K  K G +  + + D   +  L  
Sbjct: 123 RTA--LMVRFAAFCGLRACEIAKLRGSDWDGELLRVK-GKGGRVRIIPVQDRTLIYHLEQ 179

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHEL 307
            P      F       ++A   +         AGV  + H +R    T++  A      +
Sbjct: 180 CP---GWLFPGRIDGHLSAQYTAKLLGEY-LPAGV--TGHALRHRFGTVAYRATHDLLAV 233

Query: 308 MATYGWKTVDQAETY 322
            A  G    D  + Y
Sbjct: 234 GAVMGHAKTDTTKRY 248


>gi|293413792|ref|ZP_06656441.1| prophage DLP12 integrase [Escherichia coli B185]
 gi|291433850|gb|EFF06823.1| prophage DLP12 integrase [Escherichia coli B185]
          Length = 387

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 56/376 (14%), Positives = 120/376 (31%), Gaps = 56/376 (14%)

Query: 20  KIIYY--FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT-TLKWLIS 76
             I+Y  +    G+RI+      +               +   +  P   P  T +    
Sbjct: 7   NEIWYASYSLPGGKRIK--ESLGTKDKRQAQELHDKRKAELWRVEKPGDLPDVTFEEACL 64

Query: 77  EYRKSAHWGSLAVNSRISFESYFD-----QIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
            + +         + +   E + +     ++   S    Y  ++  H R   E  K    
Sbjct: 65  RWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQKVQ 124

Query: 132 SAIQ--------------------FLTSMRVLFKWA-VRQEYVAINPCLSVERPKRKTEG 170
           +AI+                     L  ++ + + A    +++   P   ++ P  + + 
Sbjct: 125 AAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPV--IKIPAVRNKR 182

Query: 171 IRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKT 226
           +R   KE+ ++      E  +  + F     +GLR S+      Q +         + + 
Sbjct: 183 VRWLEKEEAKRLIDECPEPLKSVVKFALA--TGLRKSNIINLEWQQIDMQRRVAWVNPEE 240

Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK-------------QKMNATQFSIWF 273
            K+   I V L D   K+L         +   + K             +KM     + W 
Sbjct: 241 SKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWL 300

Query: 274 KAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
                +AG+ +   H +R   A+    +G     L    GW++++    Y   A      
Sbjct: 301 S-ACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHL-- 357

Query: 333 IKNSRRISSVVDSDDP 348
            +++R+I  +   + P
Sbjct: 358 TEHARKIDDIFGDNVP 373


>gi|227355886|ref|ZP_03840278.1| integrase family protein [Proteus mirabilis ATCC 29906]
 gi|227163874|gb|EEI48776.1| integrase family protein [Proteus mirabilis ATCC 29906]
          Length = 398

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 52/307 (16%), Positives = 111/307 (36%), Gaps = 29/307 (9%)

Query: 54  STPKREYINSPRKKPTT-LKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDY 111
           S   ++      KK  T  K     + + A +   A ++R   E+  ++ I    G    
Sbjct: 81  SPASKKRDGIESKKIGTVFKDYTVNFLRDAQY---ADSTRAMKEAIIEKEIYPVFGKLQL 137

Query: 112 RKITTKHIRSGVESRKHTPSSAI--QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT- 168
            +ITT  +R+  E  K   + A   Q    +  +F +A+ + Y   NP  +++     T 
Sbjct: 138 EEITTPRLRALCEKIKDRGAKATALQVREIIGSVFTYAIDRGYEITNPADAIKASSIGTF 197

Query: 169 -EGIRPWTKEDMQQF---KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFS 223
               R  + +++         +S     +LA +F+L + +R S+   A    +   N   
Sbjct: 198 QARERAMSPKEIGILFRELENYSCYPTLKLAVKFVLLTLVRKSEFIHATWDEIDFKNRQW 257

Query: 224 IKTQ---KTGTIITVELPDGFMKLLAMTPI---GKETFFINND--KQKMNATQFSIWFK- 274
           +  +   K      + L D  M +L    +   G           K+ ++    +     
Sbjct: 258 VIPKGRMKGRKEHVIYLSDQAMDILTGMKVCAMGSNYLMPGRYDIKKPLSNAALNNVIDG 317

Query: 275 --AKATKAGV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG--AD 327
              +  + G+     + H +R+ ++T+  +AG  +  +              Y K   A+
Sbjct: 318 TVKRINEKGIEFEPVTVHDLRRTASTLLHEAGYNSDWIEKCLAHVQNGVRAVYNKAEYAE 377

Query: 328 RIRLGIK 334
           + R  ++
Sbjct: 378 QRRKMLQ 384


>gi|160893591|ref|ZP_02074375.1| hypothetical protein CLOL250_01145 [Clostridium sp. L2-50]
 gi|156864576|gb|EDO58007.1| hypothetical protein CLOL250_01145 [Clostridium sp. L2-50]
          Length = 658

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 32/246 (13%), Positives = 73/246 (29%), Gaps = 23/246 (9%)

Query: 94  SFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYV 153
            + +  + I          +         ++  +    +  + +  +   F +   + ++
Sbjct: 381 VYFNTLESICE------ITEEQIAEYFKLLQEEEIKAETVNRQIFDIHRFFVYLNAKGHI 434

Query: 154 AI---NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210
                +P   +++             E M+  +         RL F  L  +GLR S+ C
Sbjct: 435 KRIIFDPNYYIQKVFPYHHDRSVQEDEYMEILQKLKFFPEVQRLIFLNLWATGLRISEVC 494

Query: 211 RAG----VQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK-----ETFFINNDK 261
                      ++    +   K  T   + +     +++ +          +  F + D 
Sbjct: 495 TLKGGAYYWDGEDAWIKVYQIKMKTEKMIPISLVLYQIMKIYIKKHHIKPTDFLFKSKDG 554

Query: 262 QKMNATQFSIWFKAKATKAGVNKS-----AHGVRKFSATISADAGATAHELMATYGWKTV 316
                  F   FKA   K G++ S      H  R   A+   D G +   +    G    
Sbjct: 555 GAYRTGTFVKGFKANCKKYGIHISGETFKTHDYRHTLASSFYDEGVSIQTIRDYLGHNNE 614

Query: 317 DQAETY 322
           +  + Y
Sbjct: 615 NMTKQY 620


>gi|323136403|ref|ZP_08071485.1| integrase family protein [Methylocystis sp. ATCC 49242]
 gi|322398477|gb|EFY00997.1| integrase family protein [Methylocystis sp. ATCC 49242]
          Length = 355

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 49/330 (14%), Positives = 107/330 (32%), Gaps = 26/330 (7%)

Query: 17  RHGKIIYYFRK----GHGRRIRLPYPHE-STFIPAYMSALTGSTPKREYINSPRKKPTTL 71
           R     +Y       G  +R+    P   +T   A   AL      +E     R+   +L
Sbjct: 7   RPDSPYWYAEITNHDGKIKRVSTNIPRGRATQKRALEVALQKEQELKEQGA--RRLSVSL 64

Query: 72  KWLISEYR-KSAHWGSLAVNSRISFESYFDQIIRKSGDFD-YRKITTKHIRSGVESRKHT 129
           +    E+   S  W  L  ++R  +     +I++ +        +T   +R  V  R+  
Sbjct: 65  EQASFEFLDASTKW--LKASTRRHYALKLTKILKATPIRPALCDLTVDWVRDFVRLRREA 122

Query: 130 PS--SAIQFLTSMRVLFKWAVRQEYV---AINPCLSVER--PKRKTEGIRPWTKEDMQQF 182
            +     + LT++  + ++A+ +E       NPC    +    +  +  R     ++++ 
Sbjct: 123 TTDIQIRRELTALSSVIEFAIDREMEGAPKENPCHHYRKKGLAQPVKKPRWLKLPEVRKL 182

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI----FSIKTQKTGTIITVELP 238
                           +L +G+R  ++       +  +        + +K      + L 
Sbjct: 183 LDAAKGDRFWHPFITLILETGMRHEEALGLPWSEVDLDRKIITLGWEREKAKRGRIIPLS 242

Query: 239 DGFMKLLAMTP--IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSAT 295
           +  +  L            F+N+             ++    +AGV K   H +R   A+
Sbjct: 243 NTALHTLTHLSRLTACPYVFVNHRTGDR-YKSIGAGWRRLRLRAGVPKARIHDLRHTFAS 301

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKG 325
            +  +G +  +     G         Y  G
Sbjct: 302 WTRQSGMSREDRKDVLGHLDDTTHGGYANG 331


>gi|149008030|ref|ZP_01831578.1| putative integrase [Streptococcus pneumoniae SP18-BS74]
 gi|147760438|gb|EDK67415.1| putative integrase [Streptococcus pneumoniae SP18-BS74]
          Length = 380

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 48/327 (14%), Positives = 113/327 (34%), Gaps = 48/327 (14%)

Query: 48  MSALTGSTPKREYINSPRK--KPTTLKWLISEYRKSAHWG-SLAVNSRISFESYFDQIIR 104
            +A+      ++ +   +      T + L  E+ +  +W   +  ++  + ++   +I++
Sbjct: 42  QAAILLQEKIKQKLGEKQHFVSDITFEKLYEEFEE--NWKHGVKNSTVYASKNVKKEILK 99

Query: 105 KS-GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS---MRVLFKWAVRQEYVAINPCLS 160
           +  GD+  R I  + ++  ++       S          +  + K+A+R  Y+  N  L 
Sbjct: 100 QIEGDYLVRNIDRRLLQKVIDQLLQDGRSHNYVSKIKFKLNQIMKFAIRMNYIDTNEMLF 159

Query: 161 VERPKR-------KTEGIRPWTKEDMQQF------KSFWSEGSQPRLAFEFLLY-SGLRC 206
           VE P++       + +  +   +++ + F      ++         +    +L+ +G+R 
Sbjct: 160 VETPRKVITSDELRKKNTKYLDQKEFKLFIQNLKDEALCDYRITKYIRIAKVLFLTGMRY 219

Query: 207 SDSCRAGVQ---HLQNNIFSIK-----------TQKT-GTIITVELPDGFMKLLAMTPIG 251
            +      +       N   IK           T KT  +   +  P   + ++    I 
Sbjct: 220 GELAALNYKEDIDFSKNTIHIKHTYDFRQKERTTPKTIKSDRVITAPQKVLDIIKEQIIE 279

Query: 252 KET-------FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302
             T        FIN   + +   +     K    K G+ K  + H  R    ++ A+ G 
Sbjct: 280 NATNGFDTDFIFINTLGEPITNARVICALKRHGQKIGIEKNITTHTFRHSHISLLAELGI 339

Query: 303 TAHELMATYGWKTVDQA-ETYTKGADR 328
               +M   G        E Y+    +
Sbjct: 340 PLTAIMDRVGHSDSKTTLEIYSHVTQK 366


>gi|104774036|ref|YP_619016.1| integrase/recombinase [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC 11842]
 gi|103423117|emb|CAI97856.1| Integrase/recombinase [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC 11842]
          Length = 305

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 38/278 (13%), Positives = 91/278 (32%), Gaps = 35/278 (12%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
               I  Y++    G++   +   +      +   + +      T    +  + +   T 
Sbjct: 12  FAQWIEVYKE----GAVRERTLDKYWLSHRHLQEIAPNLKLVDTTRLEYQQILNTFAKTH 67

Query: 131 SSA--IQFLTSMRVLFKWAVRQEYVAINPCLS--VERPKRKTEGIRPWTKEDMQQFKSFW 186
             A  + F   ++ +   A  + Y+  +P     V+  +   +  +   + +++      
Sbjct: 68  EKATVMDFHHQLKAMLLDAYDEGYIHKDPTRKIVVKGKEPSEKKAKYLNEFELKLLLRHL 127

Query: 187 SEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSIKTQKT--------------- 229
              + P   +  LL   +GLR S++     + +     +I   KT               
Sbjct: 128 DLSTFPNFDWMILLIAKTGLRFSEALGLTKEDIDLEQQTINVDKTWDYKSYTGSFKQTKN 187

Query: 230 -----GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284
                   I  +L     +++   P G+  F     K+  N+T  + + K    +  +  
Sbjct: 188 VSSVRKVPIDWKLAMQLNQVIQDLPNGEPIF---AQKRVFNST-VNNFLKKHCEELNIPV 243

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
            S HG+R   A++   AG +   +    G   +   + 
Sbjct: 244 ISVHGLRHTHASLLLFAGVSIASVAKRLGHADMTTTQQ 281


>gi|325261284|ref|ZP_08128022.1| recombinase [Clostridium sp. D5]
 gi|324032738|gb|EGB94015.1| recombinase [Clostridium sp. D5]
          Length = 313

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 40/276 (14%), Positives = 89/276 (32%), Gaps = 30/276 (10%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH----TPSSAIQFLTSM 140
            +L V +  ++++  D +++      Y  +    I       ++    +P S  +   S+
Sbjct: 23  RNLGVKTLYAYKNDVDNMVKWIDMRGYSDLDADTIMMYFLYLQNEIELSPRSIRRKYVSI 82

Query: 141 RVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS-------QP 192
           R    +  ++ +   I    S  + +      +  +K ++Q   S  S            
Sbjct: 83  RQYCDFLNKEFDMNEIFFKFSSRKFQIPKNLPKVLSKAEIQSLISSVSAEFQSVSSEYHR 142

Query: 193 RLAF------EFLLYSGLRCSDSCRAGVQHLQNN---IFSIKTQKTGTIITVELPDGFMK 243
           RL        E L   GLR  +     V+        +      K   ++ +  P    K
Sbjct: 143 RLCIRNMCIIELLFCLGLRIGEIAAMDVEDYNREDCSVLIHGKGKKERMLFISSPIVCQK 202

Query: 244 L------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSAT 295
           L                 F+N    +++       +      + +N   + H +R   AT
Sbjct: 203 LNNWILTRQEMSPADSAMFVNKSGGRLSIFSIENIYYKYRELSQINPHSTPHYLRHSFAT 262

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330
              + GA   ++    G  ++   + YT+   +R +
Sbjct: 263 QLLNNGANIRDVQELMGHNSIVTTQIYTEVSLNRKK 298


>gi|300905058|ref|ZP_07122868.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 84-1]
 gi|300403045|gb|EFJ86583.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 84-1]
          Length = 346

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 39/259 (15%), Positives = 87/259 (33%), Gaps = 20/259 (7%)

Query: 85  GSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKHTPS--SAIQFLTSMR 141
            S+  +         ++ +    G+   ++I  + +   +E  K   +  +  + +  + 
Sbjct: 64  KSVTPDYAKDIWRSLEKDVFPVIGEIPVQQIKARTLVETLEPIKARGALETVRRLVQRIN 123

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIR--PWTKEDMQQFKSFW---SEGSQPRLAF 196
            +  +AV    +  NP   +     K +         E++ +        +     R   
Sbjct: 124 EIMIYAVNTGLIDANPASGIGMAFEKPKKQHMPTLRPEELPKLMRSLVMSNLSVSTRCLI 183

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNI----FSIKTQKTGTIITVELPDGFMKLLAMTP--- 249
           E+ L + +R S++  A    +  +        K  K      V L    +++L +     
Sbjct: 184 EWQLLTLVRPSEASGARWAEIDLDAKLWTIPAKRMKAKREHIVPLSPQAIEILEVMKPIS 243

Query: 250 IGKETFFI--NNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHEL 307
             +E  F   N+ KQ MN+   +   K      G    AHG+R  ++T   + G     +
Sbjct: 244 AHREHVFPSRNDPKQPMNSQTANAALKRIGY--GGKLVAHGLRSIASTAMNERGFNPDVI 301

Query: 308 MATYGWKTVDQAET-YTKG 325
            A       ++    Y + 
Sbjct: 302 EAALAHSDKNEVRRAYNRS 320


>gi|253751017|ref|YP_003024158.1| putative integrase [Streptococcus suis SC84]
 gi|253752917|ref|YP_003026057.1| integrase [Streptococcus suis P1/7]
 gi|253754742|ref|YP_003027882.1| integrase [Streptococcus suis BM407]
 gi|330831952|ref|YP_004400777.1| hypothetical protein SSUST3_0111 [Streptococcus suis ST3]
 gi|251815306|emb|CAZ50874.1| putative integrase [Streptococcus suis SC84]
 gi|251817206|emb|CAZ54929.1| putative integrase [Streptococcus suis BM407]
 gi|251819162|emb|CAR44300.1| putative integrase [Streptococcus suis P1/7]
 gi|319757268|gb|ADV69210.1| hypothetical protein SSUJS14_0101 [Streptococcus suis JS14]
 gi|329306175|gb|AEB80591.1| hypothetical protein SSUST3_0111 [Streptococcus suis ST3]
          Length = 377

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 40/279 (14%), Positives = 90/279 (32%), Gaps = 47/279 (16%)

Query: 90  NSRIS-FESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP-----------SSAIQFL 137
           +++ + +E +   I     + +  K++ +HI    E  K  P           ++  + +
Sbjct: 85  STQRNNYERH---IKPYFINTNLNKLSYEHIFEFREYLKIKPKKQNDSSTLSHNTVNKIM 141

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR-LAF 196
             ++ +F   VR+  +  NP  ++ +       I  W  E+  +F+   +       L F
Sbjct: 142 ILLKKIFDTGVRKSLIDKNPVENIRKLPISKPTINFWNVEEFNEFRKLITSDEISYDLFF 201

Query: 197 EFLLYSGLRCSDSCRAGVQHLQ---------------NNIFSIKTQKTGTIIT-VELPDG 240
               ++G+R  +        +                N    I + KT      + +   
Sbjct: 202 TIAFFTGMRLGEIVALTWYDINLITNSIHITKTAYFVNGTNHINSTKTRAGTRRITINHK 261

Query: 241 FMKLLAMTPIGKETFF--INNDKQ----------KMNATQFSIWFKAK-ATKAGVNK-SA 286
             ++LA     ++        D +           M        FK   A    + K   
Sbjct: 262 LARMLADWKEKQKDLLKEFTTDTENLQVIQSTPLPMTKNMIDKKFKQILARNDYLKKIRI 321

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
           H +R   A++  + G     +    G  ++    +TY+ 
Sbjct: 322 HDLRHSHASLLINQGEDYLVVKERLGHASITTTIDTYSH 360


>gi|308062001|gb|ADO03889.1| integrase-recombinase protein [Helicobacter pylori Cuz20]
          Length = 355

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/284 (12%), Positives = 92/284 (32%), Gaps = 55/284 (19%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           L++E+  S + G L++ ++ ++      +       +  +    +I              
Sbjct: 101 LLAEFL-SVYTGGLSLATKKNYRIALLGLFSYIDKQNQDENEKSYIY------------- 146

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS-------FW 186
              L ++  + + A                     +       E++++F           
Sbjct: 147 NITLKNISGVNQSA-------------------GNKLPTHLNNEELEKFLEGIDKIEMSA 187

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDG---- 240
              ++ RL  + ++++G+R +++ +  ++    +N  ++I  +  G      +       
Sbjct: 188 KVRARNRLLIKIIVFTGMRSNEALQLKIKDFTLENGCYTILIKGKGDKYRAVMLKAFHIE 247

Query: 241 --FMKLLAMT---PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKF 292
               + L      P+  +  F N     +         +     AG+ +    AH +R  
Sbjct: 248 SLLKEWLMERELYPVKNDLLFCNQKGSALTQAYLYKQVERIINFAGLRREKNGAHMLRHS 307

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
            AT+          +    G  +++ +  YT   D+ RL    S
Sbjct: 308 FATLLYQKRHDLILVQEALGHASLNTSRIYTH-FDKQRLEEAAS 350


>gi|304384469|ref|ZP_07366869.1| integrase [Prevotella marshii DSM 16973]
 gi|304334441|gb|EFM00734.1| integrase [Prevotella marshii DSM 16973]
          Length = 306

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 46/241 (19%), Positives = 81/241 (33%), Gaps = 23/241 (9%)

Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
            R  ++ R    ++  ++L  +  L   AV Q  +  NP  + +  K + + IR   K D
Sbjct: 55  YRFYLKKRGLATATMNRYLCWLSRLMYRAVSQRLIRCNPFENAKYEKAEQK-IRFLQKSD 113

Query: 179 MQ---QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---NNIFSIK--TQKTG 230
           +      +    E  Q R  F F  ++GL  +D       H+Q   +    I+   QKT 
Sbjct: 114 VAKLMALRVIDKEAEQARRMFIFSCFTGLAIADMEHLQFGHIQTAADGQKYIRKERQKTK 173

Query: 231 TIITVELPDGFMKLL----AMTPIGKETFFINNDKQKM------NATQFSIWFKAKATKA 280
               V L      ++       P  KE   +             + +  S          
Sbjct: 174 VEFIVPLHPIAEAIINQCKDERPSTKEMQTVKEKGDDFIFHCACSRSVMSAKLSIVGKAC 233

Query: 281 GVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338
           G+    S H  R    T+S  AG     +    G  ++   + Y +  D      ++  R
Sbjct: 234 GIRERLSYHMARHTFGTMSLSAGIPIESIAKMMGHASISSTQIYAQVTDNK--ISEDMDR 291

Query: 339 I 339
           +
Sbjct: 292 L 292


>gi|301305734|ref|ZP_07211821.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 124-1]
 gi|300838988|gb|EFK66748.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 124-1]
 gi|315252785|gb|EFU32753.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 85-1]
          Length = 402

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 56/343 (16%), Positives = 115/343 (33%), Gaps = 39/343 (11%)

Query: 18  HGKIIYYFRK-----------GHGRRIRLPYPHESTFIPAYMSALT-GSTPKREYINSPR 65
           +GK ++ FR            G G    L           Y++ L  G  P+ +   +  
Sbjct: 38  NGKKLWRFRYQRPATKQRTMMGLGAFPALSLADARRLRADYLALLANGIDPQIQAEVAEE 97

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNS------RISFESYFDQIIRKSGDFDYRKITTKHI 119
           ++   L  + S    +A+W  L   S      +  + S    +    G+   ++I  + +
Sbjct: 98  QQQIALDSIFST--VAANWFQLKSKSVTPDYAKDIWRSLEKDVFPVIGEIPVQQIKARTL 155

Query: 120 RSGVESRKHTPS--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR--PWT 175
              +E  K   +  +  + +  +  +  +AV    +  NP   +     K +        
Sbjct: 156 VETLEPIKARGALETVRRLVQRINEIMIYAVNTGLIDANPASGIGMAFEKPKKQHMPTLR 215

Query: 176 KEDMQQFKSFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI----FSIKTQK 228
            E++ +        +     R   E+ L + +R S++  A    +  +        K  K
Sbjct: 216 PEELPKLMRSLVMSNLSVSTRCLIEWQLLTLVRPSEASGARWAEIDLDAKLWTIPAKRMK 275

Query: 229 TGTIITVELPDGFMKLLAMTP---IGKETFFI--NNDKQKMNATQFSIWFKAKATKAGVN 283
                 V L    +++L +       +E  F   N+ KQ MN+   +   K      G  
Sbjct: 276 AKREHIVPLSPQAIEILEVMKPISAHREHVFPSRNDPKQPMNSQTANAALKRIGY--GGK 333

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET-YTKG 325
             AHG+R  ++T   + G     + A       ++    Y + 
Sbjct: 334 LVAHGLRSIASTAMNERGFNPDVIEAALAHSDKNEVRRAYNRS 376


>gi|294853357|ref|ZP_06794029.1| hypothetical protein BAZG_02313 [Brucella sp. NVSL 07-0026]
 gi|294819012|gb|EFG36012.1| hypothetical protein BAZG_02313 [Brucella sp. NVSL 07-0026]
          Length = 418

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 48/312 (15%), Positives = 110/312 (35%), Gaps = 28/312 (8%)

Query: 49  SALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSG 107
           +A      ++    +  K   T      ++ +      ++  +R      +++ +  K G
Sbjct: 93  AAGKSPAKEKARDKARVKDAETFGAWAEKWLRGYQ---MSETTRNMRRGTYERDLKPKFG 149

Query: 108 DFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165
           +    +IT + +R+  ++   +  PS+A+     M ++F+WA+ +     NP   V    
Sbjct: 150 NRKLIEITYEDLRALTDAIVEQGRPSTAVVCREIMMLVFRWAIERGQKVENPADLVRPST 209

Query: 166 RKT--EGIRPWTKEDMQQFKSFWS-EGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQ-- 218
                   R  T E++     +    G+ P  R A + LL + +R S+   A    +   
Sbjct: 210 IAKFEPRDRALTPEEIGLMYQYMERIGTTPSIRAAAKLLLLTMVRKSELTNATWSEINFI 269

Query: 219 NNIFSIKTQ--KTGTIITVELPDGFMKLLAMTPI---GKETFFINNDKQ--KMNATQFSI 271
           + +++I  +  K      V L    +++         G E    +       M++   + 
Sbjct: 270 DALWTIPKERMKRRNPHLVFLSRQVLEIFTALKTFAGGSEYVLPSRYDSDLPMSSATLNQ 329

Query: 272 WFKAKATKAGVNKS------AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
                   A            H +R+ ++T+  +AG     +      +       Y K 
Sbjct: 330 VLTLTYRLAQKEGQSLGKFGPHDLRRTASTLLHEAGYNTDWIEKCLAHEQKGVRAVYNKA 389

Query: 326 --ADRIRLGIKN 335
              D+ R  +++
Sbjct: 390 EYRDQRRAMLQD 401


>gi|256849956|ref|ZP_05555387.1| integrase [Lactobacillus crispatus MV-1A-US]
 gi|256713445|gb|EEU28435.1| integrase [Lactobacillus crispatus MV-1A-US]
          Length = 407

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 49/322 (15%), Positives = 115/322 (35%), Gaps = 51/322 (15%)

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG-DFDYRKITTKHIRSG 122
             +   T   L ++Y + A    LA N+    ++  ++I  + G D   + +T + I   
Sbjct: 60  SGETDITFAELKNKYLEIAQ-KQLAYNTYYRKKTTLNKISSEWGKDTIAKNVTPQFINKY 118

Query: 123 VESR--KHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE-------RPKRKTEG 170
           +++      P   ++   + + + V+++  ++  Y++ NP   V+         KR+   
Sbjct: 119 LDNMLYGEHPYANATVNSYKSCIGVVYEMGIKYGYISNNPIDKVKISWKSESLKKREEIE 178

Query: 171 IRPWTKEDMQQFKSFWSEGSQPRLA--FEFLLYSGLRCSDSCRAGVQHL----------- 217
            +     ++++      E  +P L   FE++  +G+RC ++     +++           
Sbjct: 179 NKYLDDNELERILKDCDERKRPDLKEFFEWMYLTGMRCGEAAAIQKKNILQDKDGTWFAR 238

Query: 218 -QNNIFSIKTQ--------KTGTI------ITVELPDGF---MKLLAMTPIGKETFFINN 259
            + ++ +I+ +        KT           V LP       K         +  F NN
Sbjct: 239 VRGSLITIRNEPDPSKRHIKTKNAKTYAGDRDVTLPPEAITIAKNHCEDKKANDFIFTNN 298

Query: 260 DKQK---MNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWK 314
            K      N ++ +   K+   +  + K    H  R    +  A+ G   + +    G  
Sbjct: 299 WKTSEGYFNNSKLNKVLKSIMKRQKIKKKLVTHIFRHTHVSKLAEMGVPLYVIQQRVGHG 358

Query: 315 TVD-QAETYTKGADRIRLGIKN 335
                   Y     +++  + N
Sbjct: 359 DSRITRRIYLHITKKVKKDLAN 380


>gi|255012146|ref|ZP_05284272.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           3_1_12]
          Length = 400

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 46/272 (16%), Positives = 98/272 (36%), Gaps = 29/272 (10%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQ------IIRKSGDFDYRKITTK---HIRSGVESR 126
            +Y K    G  A  + + + + +        I     D   +++T          + + 
Sbjct: 107 EDYEKQVEAGMKAKGTLLKYRTVYKHMQEFLDIRYHVKDIALKELTPAFISDFEMFLRTD 166

Query: 127 KHTPSSAIQFLTS-MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           KH  ++ +      +R +   A+  E++  +P    E  K +T      TK++++     
Sbjct: 167 KHCCTNTVWLYVCPLRTMVFIAINNEWLTRDPFREYEIKKEETT-RSFLTKDEIRLLMEG 225

Query: 186 WSEGSQPRLAFEFLLY---SGLRCSDSCRAGVQHLQN-----NIFSIKTQKTGTIITVEL 237
             + ++  L  +  L+   +GL  +D      ++++         +I  QKTG +  + L
Sbjct: 226 KLKNAKQELYRDLYLFCAFTGLSFADMRNLTEENIRTYFDEHEWININRQKTGVVSNIRL 285

Query: 238 PDGFMKLL--AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFS 293
            D   +++       G    F                 +A A + G+ K  + H  R  +
Sbjct: 286 LDIANRIIGKYRGLCGDGRIFPVPH-----YNTCLAGIRAVAKRCGITKHITWHQSRHTA 340

Query: 294 AT-ISADAGATAHELMATYGWKTVDQAETYTK 324
           AT I    G     + +  G K++   + Y K
Sbjct: 341 ATTIFLSNGVPIETVSSMLGHKSIKTTQIYAK 372


>gi|198275585|ref|ZP_03208116.1| hypothetical protein BACPLE_01750 [Bacteroides plebeius DSM 17135]
 gi|198271214|gb|EDY95484.1| hypothetical protein BACPLE_01750 [Bacteroides plebeius DSM 17135]
          Length = 405

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 40/253 (15%), Positives = 87/253 (34%), Gaps = 23/253 (9%)

Query: 87  LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKW 146
           L    +  ++     +       +   I + H    ++ +    +S+ + L  ++ +   
Sbjct: 146 LKEFVQQKYKREDLYLRE----LNLNFIQSFHTFLRID-KGMAQNSSTKHLKLLKKIVNL 200

Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ---FKSFWSEGSQPRLAFEFLLYSG 203
           AV   Y+A NP ++ +  +R+   I    +E++++   F +      + +  F F  ++G
Sbjct: 201 AVANSYMATNPFITYK-IEREPVEIDFLDEEELRKIINFDTPLPRLERAKDMFLFGCFTG 259

Query: 204 LRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFIN 258
           L   D      +H + +         +  KTG +  + L      +L     G E     
Sbjct: 260 LSYIDIKTLAPEHFEKDNTGRIWIKKRRVKTGVLSRIPLLPIAKLILDKYK-GGEKLLPI 318

Query: 259 NDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSA-TISADAGATAHELMATYGWKT 315
            D         + + K  A    + K  + H  R   A T++     +   +    G   
Sbjct: 319 QD-----PADINKYLKDIAILCDIKKRITFHTSRHTFASTVTLANNISLEVVSKMLGHTN 373

Query: 316 VDQAETYTKGADR 328
                 Y K  D+
Sbjct: 374 TRMTNHYAKLIDK 386


>gi|188527478|ref|YP_001910165.1| integrase-recombinase protein [Helicobacter pylori Shi470]
 gi|188143718|gb|ACD48135.1| integrase-recombinase protein [Helicobacter pylori Shi470]
          Length = 356

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/284 (12%), Positives = 92/284 (32%), Gaps = 55/284 (19%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           L++E+  S + G L++ ++ ++      +       +  +    +I              
Sbjct: 102 LLAEFL-SVYTGGLSLATKKNYRIALLGLFSYIDKQNQDENEKSYIY------------- 147

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS-------FW 186
              L ++  + + A                     +       E++++F           
Sbjct: 148 NITLKNISGVNQSA-------------------GNKLPTHLNNEELEKFLEGIDKIEMSA 188

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDG---- 240
              ++ RL  + ++++G+R +++ +  ++    +N  ++I  +  G      +       
Sbjct: 189 KVRARNRLLIKIIVFTGMRSNEALQLKIKDFTLENGCYTILIKGKGDKYRAVMLKAFHIE 248

Query: 241 --FMKLLAMT---PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKF 292
               + L      P+  +  F N     +         +     AG+ +    AH +R  
Sbjct: 249 SLLKEWLMERELYPVKNDLLFCNQKGSALTQAYLYKQVERIINFAGLRREKNGAHMLRHS 308

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
            AT+          +    G  +++ +  YT   D+ RL    S
Sbjct: 309 FATLLYQKRHDLILVQEALGHASLNTSRIYTH-FDKQRLEEAAS 351


>gi|157159388|ref|YP_001462358.1| phage integrase family protein [Escherichia coli E24377A]
 gi|157081418|gb|ABV21126.1| phage integrase family protein [Escherichia coli E24377A]
          Length = 372

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 57/355 (16%), Positives = 113/355 (31%), Gaps = 42/355 (11%)

Query: 17  RHGKIIYYFRKG-HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT----- 70
           R G++ Y ++    G+   L     +    A  +    +  + EY      +  +     
Sbjct: 22  RTGRVYYQYKNPVTGKFHGLGTDKGTAEKIASTANQRIAAAEAEYFMRKIDESPSATKRR 81

Query: 71  ---LKWLISEYRKSAHWG----SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
              LK  +  Y K          +A  +          ++ + G+   +++  +     +
Sbjct: 82  GIRLKAWVDRYLKIQDARLKNGDIAATTHKEKARMAAHLVSRLGNHPLKELEVRDFALIL 141

Query: 124 ESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAI--NPCLSVERPKRKTEGIRPWTKEDM 179
           +    K   S+A         ++K A     V    NP  +  +P  K    R  T ED 
Sbjct: 142 DEWLDKDMVSTARVNRGLWVDIYKEAQHAGEVPPGWNPPEATRKPIPKVTRAR-LTLEDW 200

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239
           Q+  +   E    R A    + +G R  D C      + N    I   KTG  + + L  
Sbjct: 201 QKIYNATPEEHFIRNAMLLAIVTGQRRDDICHMRFSDVWNEHLHITQGKTGMRLALPLTL 260

Query: 240 G-------FMKLLAMTPIGKETFFINNDK-----QKMNATQFSIWFKAKATKAGV----- 282
                     +++        + ++ + +     + M+    S +F      A +     
Sbjct: 261 RCDAIGITLKEVIDGCRDKILSPYLIHSRHQKQPKPMSKDNLSDYFAKARDLARIIPPAG 320

Query: 283 --NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY--TKGADRIRLGI 333
               + H  R  S  +    G     L    G K     + Y  T+G + ++L +
Sbjct: 321 KTPPTFHEQRSLSERLYRAQGIDTKTL---LGHKVQATTDRYNDTRGQEWVKLVV 372


>gi|146304382|ref|YP_001191698.1| phage integrase family protein [Metallosphaera sedula DSM 5348]
 gi|145702632|gb|ABP95774.1| phage integrase family protein [Metallosphaera sedula DSM 5348]
          Length = 286

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 39/262 (14%), Positives = 85/262 (32%), Gaps = 24/262 (9%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV---ESRKHTPSSAI 134
           + +S  +      +   + +     + +    D R +TT+ +   +    SRK       
Sbjct: 18  FMESLKFSGAGQGTIKLYSTAIQDFL-QFVKKDPRSVTTQDVIDWIGSLNSRKGRSRVVD 76

Query: 135 QF-LTSMRVLFKWAVRQ--EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           +   ++    +  AVR+  +++ +N  +    P+ ++       +ED+    S      +
Sbjct: 77  KRGRSATIRSYVIAVRRFLKWLGVN--VKPPVPRIRSPERMALREEDIVALLSAC-RRLR 133

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDG----FMKLL 245
            ++    L+ +GLR S+        +        ++  K G    V           + L
Sbjct: 134 DKVIVSLLVDTGLRSSELLSLRRSDVDLERMLIRVRETKNGEERIVFFTSRTATLLRQYL 193

Query: 246 AMT--PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGA 302
             T      +    N     ++        K    K G+     H +R   AT +   G 
Sbjct: 194 RKTQDKESDDAPLFN-----LSYQALYKLIKRLGRKTGLTWLRPHVLRHTFATNAIRRGV 248

Query: 303 TAHELMATYGWKTVDQAETYTK 324
               +    G K +   + YT 
Sbjct: 249 PLPAVQRLMGHKDIKTTQIYTH 270


>gi|71907955|ref|YP_285542.1| Phage integrase [Dechloromonas aromatica RCB]
 gi|71847576|gb|AAZ47072.1| Phage integrase [Dechloromonas aromatica RCB]
          Length = 426

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 50/320 (15%), Positives = 106/320 (33%), Gaps = 34/320 (10%)

Query: 45  PAYMSALTGSTPKREYINSPRKKPT--TLKWLISEYRKSAHWGSLAVNSRISFESYFDQ- 101
            A+ S   G +P R  +    +     T      +Y   A    LA +++   +S +D+ 
Sbjct: 87  RAHRSVEQGESPSRSKVEKRTEAADALTFGSWAEKYFAEA---DLAESTKAMRKSVYDRN 143

Query: 102 IIRKSGDFDYRKITTKHIRSGVESRKHTPSSA--IQFLTSMRVLFKWAVRQEYVAINPCL 159
           +  + G     +IT   + +  E  K   ++A  +     +  +F++   +     NP  
Sbjct: 144 LADEFGRLKLEEITPVRLMARCEKIKERGAAAPAVHAREIVLQVFRFIQARGLKIDNPAE 203

Query: 160 SVERPKRKT--EGIRPWTKEDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGV 214
           S+      T     R     ++  F     + +     RLA +F+L + +R ++   A  
Sbjct: 204 SIRPSAIATFKARDRALMPAEIHTFFKALEQTATAATLRLAVKFMLLTMVRKTEFIEAKW 263

Query: 215 QHLQNNIFSIK----TQKTGTIITVELPDGFMKLLAMTPI--GKETFFINNDKQKMNATQ 268
             +              K G    V L    + +L          ++   +  +   A  
Sbjct: 264 DEVNFETAIWTIPKERMKAGRPHNVYLSQQALDILVAFKTCFSASSYL--HPGRYETALP 321

Query: 269 FSIWFKAKATKAGVNK-----------SAHGVRKFSATISADAGATAHELMATYGWKTVD 317
            S     +   A V             + H +R+ ++T+  +AG     +      +   
Sbjct: 322 ISSATLNRVIDATVKVIHDRGEEFAPFTVHDLRRTASTLLHEAGFNTDWIEKCLAHEQRG 381

Query: 318 QAETYTKG--ADRIRLGIKN 335
               Y K   A++ R  ++ 
Sbjct: 382 VRAIYNKAEYAEQRRTMLQA 401


>gi|294083745|ref|YP_003550502.1| phage integrase family protein [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292663317|gb|ADE38418.1| phage integrase family protein [Candidatus Puniceispirillum marinum
           IMCC1322]
          Length = 385

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 66/358 (18%), Positives = 116/358 (32%), Gaps = 26/358 (7%)

Query: 10  FVTKERTRHG-KIIYYFRKGHG------RRIRLPYPHESTFIP--AYMSALTGSTPKREY 60
            +    TR+G K   + R+  G       +I              A   A+    P    
Sbjct: 31  GLAVRITRNGAKTFIFERRPKGTSVARQEKIGRCSDFSIEQARSIARQKAVDFEDPDYLQ 90

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSR-ISFESYFDQIIRKSGDFDYRKITTKHI 119
                K   T K    +Y  S    +LA  +R      +  +++    D        KH+
Sbjct: 91  KVFETKTRLTFKDAYEQYV-SVRMSALAQTTREKQIGLFQREVLPTMADIPLESFVRKHL 149

Query: 120 RSGVE--SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
            S      +     +A     S+     W V+Q Y++INP L      +  +  R  T +
Sbjct: 150 SSITLPIQQSGRQGTASDVWKSVSAFLTWCVKQGYLSINPVLGATPEFQVAKRERKLTLD 209

Query: 178 DMQQFKSFWSEGSQPRL-AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI--IT 234
           ++          +  R  A   LL    R ++  R+        + +I +++T +   I+
Sbjct: 210 ELASVWRAAEALTPVRCSAVRLLLLLPFRKTEFTRSVWDEFDGEMMNIPSERTKSKRAIS 269

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFS 293
           + L D   K L +        F  N +            K     A V     H  R+  
Sbjct: 270 LYLTDFAKKQLPLRRNDSNLIFTTNGQVPTRLD--DKLLKRLIKLADVEPFGWHDNRRTF 327

Query: 294 ATISAD-AGATAHELMATYGWKTVDQ---AETYTKGADRIRLGI---KNSRRISSVVD 344
           +T   D AGA    + A    +   Q   +  Y +     R+     + S ++ + VD
Sbjct: 328 STNLNDLAGADYLAIEACLNHQVEAQRGVSGVYNRATYAERMQAVLQQWSDKVEAAVD 385


>gi|291536854|emb|CBL09966.1| Site-specific recombinase XerD [Roseburia intestinalis M50/1]
          Length = 398

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 46/312 (14%), Positives = 101/312 (32%), Gaps = 47/312 (15%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH 128
           T       Y +      + +N+ ++ E   D +I+    +    +IT   +R        
Sbjct: 57  TFGEFWKLYTEDVKNY-VKLNTWLTKEHIVDTKILPYFRNLKMNEITPGDVRKWQNEMVA 115

Query: 129 ---------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKED 178
                    + +        +  +F  A R   +  NP        + + + +  WT E+
Sbjct: 116 FRYENGKCYSQTYKKTMHNILSAIFNHACRFYNLKSNPARQAGNMGREEKKEMLFWTTEE 175

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT--------- 229
            ++F     +      AFE L ++G+R  +     ++       +++  K+         
Sbjct: 176 YKKFSEAVIDKPVSFYAFEMLYWTGMRLGELLALTMEDFDFEKNTVRINKSYQRLQGQDV 235

Query: 230 -------GTIITVELPDGFMK--------LLAMTPIGKETFFINNDKQKMNATQFSIWFK 274
                   +  T++LP    +        L   TP  +  F +                +
Sbjct: 236 ITTPKTPKSNRTIKLPKFLAEEMQEYFAMLYDQTPTDRI-FLVTKSFLH-------HEME 287

Query: 275 AKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
                +GV K   H +R    +   D G +A  +    G +++D    Y+      ++  
Sbjct: 288 RGCKLSGVKKIRIHDLRHSHISHLIDLGFSAVAIADRVGHESIDITYRYSHLFPSKQVA- 346

Query: 334 KNSRRISSVVDS 345
             + R+ +V  S
Sbjct: 347 -MADRLDAVNAS 357


>gi|282879690|ref|ZP_06288420.1| site-specific recombinase, phage integrase family [Prevotella
           timonensis CRIS 5C-B1]
 gi|281306359|gb|EFA98389.1| site-specific recombinase, phage integrase family [Prevotella
           timonensis CRIS 5C-B1]
          Length = 430

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 46/280 (16%), Positives = 85/280 (30%), Gaps = 34/280 (12%)

Query: 96  ESYFDQIIRKSG--DFDYRKITTKHIRSGV---ESRKHTPSSAIQFLTSMRVLFKWAVRQ 150
           +    + +   G  D     IT           + R    S+    L  +  L   AV +
Sbjct: 135 DRNLREFVENKGVQDIPIGAITEDLFEEYRFFLKKRGLKASTVNSNLCWLSRLIFRAVSK 194

Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WSEGSQPRLAFEFLLYSGLRCS 207
             +  NP  + +  K + + IR   K D+ +  +      E    RL F F  ++GL  S
Sbjct: 195 RIIRCNPFENAKYEKEEKK-IRFLQKSDVMKLMAMKMNDREAELARLVFVFSCFTGLAIS 253

Query: 208 DSCRAGVQHLQ---NNIFSIK--TQKTGTIITVELPDGFMKLL-------------AMTP 249
           D      +H+Q        I+   QKT     V L      ++                 
Sbjct: 254 DMENLEYKHIQTAAEGQMYIRKERQKTKAEFIVPLHPIAEAIISHCQKEPERSEVQQTVK 313

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHEL 307
              +    + +  +                 G+    S H  R    T+S  AG     +
Sbjct: 314 EKDDHLVFHRNCSRSVMDTKLSIVGKAC---GIRQRLSFHMARHTFGTMSLSAGIPIESI 370

Query: 308 MATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
               G  ++   + Y +  D      ++  R+ +   + +
Sbjct: 371 AKMMGHASISSTQVYAQVTDNK--ISEDIDRLIAKQSAKE 408


>gi|197284834|ref|YP_002150706.1| phage integrase [Proteus mirabilis HI4320]
 gi|194682321|emb|CAR42110.1| phage integrase [Proteus mirabilis HI4320]
          Length = 375

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 55/350 (15%), Positives = 111/350 (31%), Gaps = 47/350 (13%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKR--------EYINSPR 65
              R  KI + +R     +       E+      + A      +R        + + + +
Sbjct: 19  YHPRMKKIYWRYRHPISGKFHSLGDDEAQAKQIALEANNRIAEQRTRQILIIGDRVATMK 78

Query: 66  KKPTTLKWLISEY------RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119
            +  ++   +  Y      R S     LA  +    +   D + +K   +    I T+ +
Sbjct: 79  DQSISVSTWLDRYWNIQKERLSQGEIKLA--TYKQKKKPIDLMRQKLALYPLANIGTRDL 136

Query: 120 RSGVESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAI--NPCLSVERPKRKTEGIRPWT 175
            S ++  K       A    +    +FK A     V    NP L+ +RP+ +    R  T
Sbjct: 137 VSIIDEYKAIGQMRMAQVVRSVFSDIFKEAQHAGEVPPGYNPALATKRPRTRIRRQR-LT 195

Query: 176 KEDMQQFKSFWSE-GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234
            ++  +      +       A    + +G R SD  R   Q + ++   I   KTG+ + 
Sbjct: 196 LDEWHKIYDIADKQHRYMGNAMLLAIVTGQRVSDISRMRFQDIWDDHLHIIQSKTGSKVA 255

Query: 235 VELPDG-------FMKLL-AMTPIGKETFFI--------NNDKQKMNATQFSIWFKAKAT 278
           + L            +++          + +        +   +++ A   +  FK    
Sbjct: 256 IPLSLRNQAINVSLKEVIERCRDRIVSHYLVHYHRTTSQSKRGEQVTANTLTTNFKKARN 315

Query: 279 KAGVN------KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           K  ++       + H  R  S  +    G       A  G  T  Q + Y
Sbjct: 316 KTDIDWGEGTPATFHEQRSLSERLYRKQGIDT---QALLGHTTRLQTDRY 362


>gi|298206605|ref|YP_003714784.1| putative site-specific recombinase [Croceibacter atlanticus
           HTCC2559]
 gi|83849235|gb|EAP87103.1| putative site-specific recombinase [Croceibacter atlanticus
           HTCC2559]
          Length = 295

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 41/277 (14%), Positives = 100/277 (36%), Gaps = 25/277 (9%)

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYF----DQIIRKSGDFDYRKITTKHIRSGVE 124
            T+K  +   R    +   ++++  ++ +      D + R+  +     I    IRS + 
Sbjct: 2   ATIKAFLDYLRLEKKY---SIHTINAYNNDLVALSDFVSREFSETSINNIPYALIRSWII 58

Query: 125 SRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
           S   +     +  + ++S++  + +  + E + ++P +  +  K +     P++K+++  
Sbjct: 59  SLVDSGISNRTINRKVSSLKSYYSFLQKIEELEVSPLIKHKSLKVEKRLQVPFSKKEVSD 118

Query: 182 FKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE 236
             S ++  S    + +   E    +G+R S+     +  +      +K   K      + 
Sbjct: 119 VLSGFTLNSFEDYRDKAIVELFYSTGMRRSELINLKLSDINIANHYVKVLGKRNKERIIP 178

Query: 237 LPDGFMKLLAMTPIGKET--------FFINNDKQKMNATQFSIWFKAK--ATKAGVNKSA 286
           L +     L      K+          F+ +   K+  T              + + KS 
Sbjct: 179 LIESVSLTLRQYFEIKDAEFKESSKWIFVTSKNDKVYETLVYRIINNYFSKVSSKIKKSP 238

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           H +R   AT     GA  + +    G  ++   + YT
Sbjct: 239 HLLRHSFATHLLGEGANLNAVKDLLGHSSLAATQVYT 275


>gi|312868643|ref|ZP_07728837.1| site-specific recombinase, phage integrase family [Lactobacillus
           oris PB013-T2-3]
 gi|311095852|gb|EFQ54102.1| site-specific recombinase, phage integrase family [Lactobacillus
           oris PB013-T2-3]
          Length = 282

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 30/260 (11%), Positives = 81/260 (31%), Gaps = 33/260 (12%)

Query: 95  FESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HTPSSAIQFLTSMRVLFKWAVRQEY 152
           +    +++         + IT    +  +      H P S  +   ++R   + A+  +Y
Sbjct: 4   YRLTGNRLKTYFSGVKIKDITRGQYQEFINWYGKDHAPQSVKKLNMAVRGCVRSAILDDY 63

Query: 153 VAINPCLSVERPKRKTEGIRP--WTKEDMQQFKSFWSEGSQP-----RLAFEFLLYSGLR 205
           +  +    V      ++ ++       +++Q       G        R      +Y+G+R
Sbjct: 64  LIKDFTQGVTLTANDSKRVKVDYLNLAEIKQLIEATQAGITRHRYTSRYMILTAIYTGMR 123

Query: 206 CSDSCRAGVQHLQNNIFS---------------IKTQKTGTII-TVELPDGFMKLLAMTP 249
            S+      + +                      K  K  + + T+++    + LL    
Sbjct: 124 LSEIQALTWKDID--FIHHTISINKSWNAADRSFKPTKNKSSVRTIKINHKLIALLKQLA 181

Query: 250 IGKET--FFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGATA 304
             +++   F+N       +   +   ++      +++S    H +R     +    G   
Sbjct: 182 ASRQSNLVFMNQYGTVPTSNAVNKTLRSLLEALNIHRSGFHFHSLRHSHVALLLAKGVDI 241

Query: 305 HELMATYGWK-TVDQAETYT 323
           + +    G   T   ++ Y 
Sbjct: 242 YAISKRLGHSNTATTSQIYA 261


>gi|262039474|ref|ZP_06012777.1| site-specific recombinase, phage integrase family [Leptotrichia
           goodfellowii F0264]
 gi|261746503|gb|EEY34039.1| site-specific recombinase, phage integrase family [Leptotrichia
           goodfellowii F0264]
          Length = 323

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 39/304 (12%), Positives = 107/304 (35%), Gaps = 42/304 (13%)

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHI 119
               + K    + L   + K      L +++  ++++ ++  I    G+     I+++ +
Sbjct: 2   ATKTKSKDIKFEKLADLWLK-RERNFLKISTYSTYKNLYETHIKPVFGNKFIGNISSESL 60

Query: 120 RSGV-ESRKH---------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT- 168
           +  + +  K+         +  +    +T +++   +A+R+  +     L  + PK    
Sbjct: 61  QQFIFDKLKNGRLDGNGGLSRKTVKDIMTIIKISINYAIRENIIKEK-SLKYKIPKTDKI 119

Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPR-LAFEFLLYSGLRCSDSCRAGVQHLQNN------- 220
             I  + +E+      + +     + +     +  GLR  + C    + +          
Sbjct: 120 NEINTFNQEEQSLLFKYIASNLTSKSVGILLAMSIGLRIGELCGLKWKDIDLQNEILIVN 179

Query: 221 ----IFSIKTQKTGTI-------------ITVELPDGFMKLLAMTPIGKET-FFINNDKQ 262
                   + +K G                 + L    +  L +  I  ++ +F++N+++
Sbjct: 180 KTLQRIYFRVKKGGKSEIIISVPKSKNSYRIIPLSRNLVNFLKILQIDDKSNYFLSNNEK 239

Query: 263 KMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-E 320
            +    +  ++     K  + K   H +R   AT + ++G     +    G  +V+   E
Sbjct: 240 YIEPKTYRRYYYKILEKLKIRKLKFHSLRHTFATTAIESGIDYKTVSEILGHASVNTTLE 299

Query: 321 TYTK 324
            YT 
Sbjct: 300 LYTH 303


>gi|254718782|ref|ZP_05180593.1| Phage integrase [Brucella sp. 83/13]
 gi|265983761|ref|ZP_06096496.1| phage integrase [Brucella sp. 83/13]
 gi|306837500|ref|ZP_07470375.1| Phage integrase [Brucella sp. NF 2653]
 gi|264662353|gb|EEZ32614.1| phage integrase [Brucella sp. 83/13]
 gi|306407392|gb|EFM63596.1| Phage integrase [Brucella sp. NF 2653]
          Length = 308

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 77/239 (32%), Gaps = 12/239 (5%)

Query: 93  ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEY 152
            SF    D+I++ +    + +     I   +  R ++ ++  + + ++  L + A +   
Sbjct: 63  RSFLGEIDEILKGARFSGFDQEMLDSIIGTLRERGNSNATINRKMAALSKLLRKAHKMGD 122

Query: 153 VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY-SGLRCSDSCR 211
           +  N    + R K +   IR    E+ ++         +        L  +G R  ++  
Sbjct: 123 I-FNLPEFI-RQKERVGRIRFLEHEEEKRLFGAIKSRCEDSYRLSVFLVDTGCRLGEAIG 180

Query: 212 AGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI 271
                +Q    +    K+    TV L     K   +     +  F       +N  +F  
Sbjct: 181 LTWNDIQEQRVTFWVTKSNRSRTVPLTRRARKASHIPHERLKGPF-----SMLNQVRFRQ 235

Query: 272 WFKAKATKAGVNKS----AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            +     + G+        H +R   A+     G     +    G +T+     Y   A
Sbjct: 236 IWNEAKAEVGLGADDQIVPHILRHTCASRLVRGGIDIRRVQMWLGHQTLQMTMRYAHLA 294


>gi|160888483|ref|ZP_02069486.1| hypothetical protein BACUNI_00900 [Bacteroides uniformis ATCC 8492]
 gi|298374441|ref|ZP_06984399.1| integrase [Bacteroides sp. 3_1_19]
 gi|156862160|gb|EDO55591.1| hypothetical protein BACUNI_00900 [Bacteroides uniformis ATCC 8492]
 gi|298268809|gb|EFI10464.1| integrase [Bacteroides sp. 3_1_19]
          Length = 409

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 39/282 (13%), Positives = 97/282 (34%), Gaps = 28/282 (9%)

Query: 86  SLAVNSRISF---ESYFDQIIR---KSGDFDYRKITTKHIRSG----VESRKHTPSSAIQ 135
             A  +  ++        + I+   K  D  + ++  + IR      +E ++    +   
Sbjct: 128 DRAPTTMSTYVYTRRTLAEFIKTEFKVSDLAFGQLNEQFIRDYQDFCLEKKRLAMETVRH 187

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP--- 192
           +L+ ++ + + A ++ +         + PK+K    +  ++E+ ++ +       +    
Sbjct: 188 YLSILKKICRIAYKEGHSEKYHFCHFKLPKQKETTPKALSRENFEKLRDLEIPEKRRSHV 247

Query: 193 --RLAFEFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVELPDGFMKLL 245
             R  F F  Y+G   +D+     ++L  +         + +KT  +  V+L    + L+
Sbjct: 248 ITRDLFLFACYTGTAYADAVSITRENLFRDDEGSLWLKYRRKKTDYLGRVKLLPEALALI 307

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATIS-ADAGA 302
                   T          +        K+    AG+++    H  R   A++   + G 
Sbjct: 308 EKYRDDTRTTLF----PPQDYHTLRANMKSLRLMAGLSQDLVYHMGRHSFASLVTLEEGV 363

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
               +    G   +   + Y +     RL     R + +  D
Sbjct: 364 PIETISKMLGHSNIKTTQIYAR-VTPKRLFEDMDRFVEATRD 404


>gi|124514822|gb|EAY56334.1| putative phage integrase [Leptospirillum rubarum]
          Length = 341

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 49/319 (15%), Positives = 97/319 (30%), Gaps = 25/319 (7%)

Query: 26  RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG 85
           RKG+ R  R           A+         +  +++    + TTL   +  Y +     
Sbjct: 17  RKGYDRITRTFDTKSEA--EAWARDAEAEMDRGVFVSRKEAENTTLSEALDRYEREVI-P 73

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-KHTPSSAIQF-LTSMRVL 143
           S     + S                   I  K I    + R K   ++ ++  L  +  +
Sbjct: 74  SKKGAVQES-MRIRIWNRSSLAKRFLSSIQGKDIAEYRDRRLKEVAANTVRHELAVLSHV 132

Query: 144 FKWAVRQ-EYVA-INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201
           F  AV++      +NP   +  PK      R     ++ +          P +     L 
Sbjct: 133 FTIAVKEWGMAGLVNPVQQIRAPKMPPGRDRRLLPGELDRIIDASGSPVLPDIVR-LALE 191

Query: 202 SGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLAMTPIG------KE 253
           +G+R  +        +     ++     K G    V L    +++LA             
Sbjct: 192 TGMRQGEIAGMTWDMVDLKKRTVTLLETKNGEKRIVPLSSEAIRILAGLARRIDGKVWGI 251

Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAG--------VNKSAHGVRKFSATISADAGATAH 305
           T        +    +    ++ +    G        V+ + H +R  + +   + G    
Sbjct: 252 TSHAVAVAFRRAVARARASYEKECEGKGEKPDSAFLVDLTFHDLRHEATSRFFEKGFNPM 311

Query: 306 ELMATYGWKTVDQAETYTK 324
           E+ A  G KT+   + YT 
Sbjct: 312 EVSAITGHKTLQMLKRYTH 330


>gi|324992925|gb|EGC24845.1| phage integrase family site-specific recombinase [Streptococcus
           sanguinis SK405]
          Length = 411

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 48/283 (16%), Positives = 94/283 (33%), Gaps = 40/283 (14%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR----SGVESRKHTPSSA 133
           Y +S     ++ ++  + +     +  + G    + IT + ++      +       S A
Sbjct: 87  YYQS----EVSEHTYATRQPSLKIVFNRFGKKKLKDITVREVQNFRTWLLAKNGGNYSQA 142

Query: 134 IQFLT--SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-FKSFWSEGS 190
              LT  + R    +AV  +Y+  N  + V+   +       WTK D ++   +      
Sbjct: 143 YAGLTFGTFRKSLDFAVDMQYLQKNVSMKVKSIPKGKSIAEYWTKNDFEEVISNICISDF 202

Query: 191 QPRLAFEFL---LYSGLRCSDSCRAGVQHLQ-----------------NNIFSIKTQKTG 230
              L F  L     +G+R ++        +                  NN       KT 
Sbjct: 203 YEHLCFVMLWLYFCTGVRVNEGTAIWWNDIDFEKKELRVAHMLIMTNKNNWQRQNHTKTD 262

Query: 231 TIITV-ELPDGFMKLLAMTP-----IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284
             + +  L D  +++L         +GK  F ++ D   M  +  S   K  A  A V  
Sbjct: 263 AGLRIVTLDDDTIQILKAWKERQSELGKVNFVLSYDGNPMLKSTISRIIKRYAKLANVPL 322

Query: 285 -SAHGVRKFSATISA-DAGATAHELMATYGWKTVDQA-ETYTK 324
             A G+R   A+    +  A+   +    G  + +   + Y  
Sbjct: 323 IQAKGLRHSHASYLINELNASVLIVSKRLGHSSPEITLKHYAH 365


>gi|307294799|ref|ZP_07574641.1| integrase family protein [Sphingobium chlorophenolicum L-1]
 gi|306879273|gb|EFN10491.1| integrase family protein [Sphingobium chlorophenolicum L-1]
          Length = 399

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 42/287 (14%), Positives = 81/287 (28%), Gaps = 42/287 (14%)

Query: 84  WGSLAVNSRISFE----SYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT--PSSAIQFL 137
           W      +   +          +    G      IT   +   +  +  T  P++  + L
Sbjct: 119 WLERRKPTLKGYGISNGHVKSALNPTFGKIALNAITVADVNRWIGKQSATLAPATVKRQL 178

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE--------- 188
            +   +   AV++  +  NP    +R K   E  R  T+++                   
Sbjct: 179 NTFNSIMNEAVKEGVIDANPSQHAKRVKAGEERQRFVTEKEWLVILETCDRIEQEQEERR 238

Query: 189 ---GSQPRLAF----EFLLYSGLRCSDSCRAGVQHLQN-----NIFSIKTQKTGTIITVE 236
                + R        +   SG+R S+       +++       +  +   K G    V 
Sbjct: 239 ELMPQEKRGWLRHFVAWAYNSGMRRSEILGLEWDNVREVDADHTVVEVLNSKNGKSRYVT 298

Query: 237 LPDGFMKLLAMTPI-----GKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVR 290
                 K+L          G    F       ++ T       A   + G+ +   H +R
Sbjct: 299 CTAEMRKILTALKALPREKGDNRLF------PLSLTTLKRALTALWKETGLKDVRLHDLR 352

Query: 291 KFSATISADAGATAHELMATYGWKTVDQ-AETYTKGADRIRLGIKNS 336
           +  ATI    G     +    G       A+ Y    DR  +    +
Sbjct: 353 RSHATILVSKGFDVRTVAGRLGHTGTAMLAKHY--AVDRGDMEAAAA 397


>gi|294795094|ref|ZP_06760229.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Veillonella sp. 3_1_44]
 gi|294454456|gb|EFG22830.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Veillonella sp. 3_1_44]
          Length = 403

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 46/357 (12%), Positives = 105/357 (29%), Gaps = 60/357 (16%)

Query: 44  IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QI 102
           +  Y          ++  +    K T LK L + + +     S+   +   ++S     I
Sbjct: 46  LEVYKLGKQWIEATQQNTSIFSSKNTKLKDLCNYWLQDVKKVSVKPKTFQKYDSTLRLYI 105

Query: 103 IRKSGDFDYRKITTKHIRSGVESRKH-----------TPSSAIQFLTSMRVLFKWAVRQE 151
           +   G+     IT + +++ + +  +           + S+       +  LF++AV   
Sbjct: 106 LPLLGEIKITSITPQQVQTVLNNWSNGTLKGKKGHIISSSTIRCTRRYLSELFEYAVNIG 165

Query: 152 YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS------EGSQPR-------LAFEF 198
            +  NP    + P+  T  I   + +++ Q  S           S  R       +A + 
Sbjct: 166 LLLKNPIKLTKPPRLITTEIHTLSLDEIHQLTSIMKQQVSNNISSPYRINYYASYIAMKI 225

Query: 199 LLYSGLRCSDSCRAGVQHLQN--NIFSIK---TQKTGTIIT-----------VELPDGFM 242
            L +G+R  +        +       S++      T   I            + +     
Sbjct: 226 ALGTGMRLGEVFGLCWDCVDLIHGHISVRRTIQTGTKGQIFQDTKTKTSRRCIPISQELQ 285

Query: 243 ---------------KLLAMTPIGKETFFINNDKQKMNATQFSIW-FKAKATKAGVNK-S 285
                          +L                 + ++ + F    F     +  +   +
Sbjct: 286 SELTTYKEFQSNYAKELGDKWTDSYGVVISGTFGKILSTSNFKSRYFIPILKQLNLEHIT 345

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGA-DRIRLGIKNSRRIS 340
            H +R   AT+          +    G  T+    +TY+    D  +  +K    + 
Sbjct: 346 FHDLRHTHATLLLSQKINPKIVQERLGHSTITLTLDTYSHLVPDIQKEAVKALDNLG 402


>gi|116071373|ref|ZP_01468642.1| possible integrase/recombinase [Synechococcus sp. BL107]
 gi|116066778|gb|EAU72535.1| possible integrase/recombinase [Synechococcus sp. BL107]
          Length = 323

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 38/269 (14%), Positives = 78/269 (28%), Gaps = 37/269 (13%)

Query: 88  AVNSRISFESYFDQIIR----KSGDFDYRKITTKHIRSGVESRKH-------TPSSAIQF 136
           +  ++  +       +R           R++    +   V   +         P S  + 
Sbjct: 46  SKETQDGYRRELRHFVRWRDRNHPHLHLRELDPALVDDWVSLLREQVAIGSLKPRSFNRR 105

Query: 137 LTSMRVLFKWAVRQEY-----VAINPC---LSVERPKRKTEGIRPWTKEDMQQFKSFWS- 187
           ++++  L++WA          V  NP      +  PK      +P  + D+       S 
Sbjct: 106 VSAVSALYRWASELTRSAVSGVPRNPIPRRTGMSAPKLA----KPLAESDLTSVLGVISA 161

Query: 188 -------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKT-QKTGTIITVEL 237
                    ++  +        G R S+ CR   + ++  +   +++   K     T+ +
Sbjct: 162 AKVKGSAIAARDYVMVRGSYLLGCRVSELCRLRWEDIEPLDEGGNVRLLGKGSKPRTIRV 221

Query: 238 ---PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSA 294
                   + L     G   F  N     +     +        +  V  + H  R   A
Sbjct: 222 STETLELFESLGRGEPGDWLFPSNKRNGPLTRQAVAARMAMWGREVNVRLTPHRCRHTHA 281

Query: 295 TISADAGATAHELMATYGWKTVDQAETYT 323
           T +   G     L AT G  +      Y 
Sbjct: 282 TFAIRRGVDVFTLSATLGRSSTGTTSHYV 310


>gi|59713846|ref|YP_206621.1| XerC/CodV family integrase/recombinase [Vibrio fischeri ES114]
 gi|59482094|gb|AAW87733.1| integrase/recombinase (XerC/CodV family) [Vibrio fischeri ES114]
          Length = 327

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 46/302 (15%), Positives = 87/302 (28%), Gaps = 59/302 (19%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----SRKHTPS 131
            + R      +LA N+   +  +    IR +      +I    I + +E     +  +P+
Sbjct: 16  DQLRIFIRTRALAYNTEKQYIYWISCFIRHNNYTSKDEINAFDIPAYLEHLVVKQNVSPN 75

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           +    L ++  L +  ++Q     N  L  +R K+ T+    +T    +           
Sbjct: 76  TQKTALNALIFLCREYLQQSV--DN--LEFKRSKKATKLPTVFT--HGEAISVINELNHP 129

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTGTIITVELP----DGFMKLL 245
            +L  + +  SGLR +++ R  V  +       +I+  K     T  LP          L
Sbjct: 130 TKLIAQLMYGSGLRINEALRLRVDDIDLIHKTITIRNGKGNKDRTTVLPESIIPELKTQL 189

Query: 246 AMTP---------IGKETFFINN--------------------------------DKQKM 264
                           E +  N                                  +  M
Sbjct: 190 EFVKQQHKMDAINGDDEVYLPNAIAKKYPHRAKSYGWQYVFPSKQISKDPRSGQHRRHHM 249

Query: 265 NATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
                         K  ++K  S+H  R   AT   + G     +    G   +   + Y
Sbjct: 250 LDRSVQKQVTNAIKKLEIDKKASSHTFRHSFATRILERGGDLRTIQELLGHSDIKTTQIY 309

Query: 323 TK 324
           T 
Sbjct: 310 TH 311


>gi|148257850|ref|YP_001242435.1| putative prophage integrase [Bradyrhizobium sp. BTAi1]
 gi|146410023|gb|ABQ38529.1| putative prophage integrase [Bradyrhizobium sp. BTAi1]
          Length = 386

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 45/273 (16%), Positives = 84/273 (30%), Gaps = 50/273 (18%)

Query: 97  SYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA-----IQFLTSMRVLFKWAVRQE 151
            +   +I   G     KI      +   +++  P  A      QF T +  +   A +  
Sbjct: 77  RFLQPLIDHFGITPLDKIDQ--TVADDAAKRIYPGLAPATLDRQFYTPLSAVINKAHQHG 134

Query: 152 YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCR 211
                  +  +RPK+    +R  T  +  +     +   +P +AF  L Y+G RC ++  
Sbjct: 135 PKGFCSPVKFKRPKKPKGRVRWITHAEAHKLIEACAPHLRPLVAF--LFYTGARCGEALW 192

Query: 212 AGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA--- 266
              +++      ++    K G    V L    + +LA  P  +   F      K+     
Sbjct: 193 LDWRNVDLQRGEVQFLDTKNGRDRGVPLHPDIVAILANLPHREGEVF-RKPGHKITKWLP 251

Query: 267 ----------------------------------TQFSIWFKAKATKAGV-NKSAHGVRK 291
                                             ++    FKA   +AG+ +   H  R 
Sbjct: 252 SGSNSGELIETVEYTLGEPYAPLDPDDERDVSAGSRIKKGFKAACDRAGITDFHPHDCRH 311

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK 324
             AT         + L    GW +++    Y  
Sbjct: 312 TWATWHYRQNRDLNRLKELGGWSSLEMVLRYAH 344


>gi|218458541|ref|ZP_03498632.1| site-specific tyrosine recombinase XerC [Rhizobium etli Kim 5]
          Length = 198

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 30/188 (15%), Positives = 52/188 (27%), Gaps = 18/188 (9%)

Query: 161 VERPKRKTEGIRPWTKEDM-------QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG 213
           +  PK+     +P +            Q        ++       L   GLR S++    
Sbjct: 1   IRSPKQPKSLPKPLSDTQAITVVSNEAQLHDEPWIAARDAAVMTLLYGCGLRISEALDLV 60

Query: 214 VQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAMTPI-------GKETFFINNDKQKMN 265
              L     +++ T K      V L       +                 F      K+ 
Sbjct: 61  PADLPKGAATLRITGKGNKTRLVPLLPVVFDAVEKYRTLCPYHLESGAPLFRGARGGKLQ 120

Query: 266 ATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           A       +   +  G+    + H +R   AT     G     +    G  ++   + YT
Sbjct: 121 AAIIQRAMQKLRSAFGLPETATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYT 180

Query: 324 KGADRIRL 331
            G D  RL
Sbjct: 181 -GVDASRL 187


>gi|194429570|ref|ZP_03062090.1| prophage DLP12 integrase [Escherichia coli B171]
 gi|194412367|gb|EDX28669.1| prophage DLP12 integrase [Escherichia coli B171]
          Length = 278

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 42/265 (15%), Positives = 95/265 (35%), Gaps = 35/265 (13%)

Query: 112 RKITTKHIRSGVESRKHTP---------SSAIQFLTSMRVLFKWA-VRQEYVAINPCLSV 161
           ++I  + +++ +   K  P          +  + L  ++ + + A    +++   P   +
Sbjct: 7   KEIWKQKVQAAIRKGKEPPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPV--I 64

Query: 162 ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN- 220
           + P  + + +R   KE+ ++      E  +  + F     +GLR S+      Q +    
Sbjct: 65  KIPAVRNKRVRWLEKEEAKRLIDECPEPLKSVVKFALA--TGLRKSNIINLEWQQIDMQR 122

Query: 221 ---IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK-------------QKM 264
                + +  K+   I V L D   K+L         +   + K             +KM
Sbjct: 123 RVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKM 182

Query: 265 NATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
                + W      +AG+ +   H +R   A+    +G     L    GW++++    Y 
Sbjct: 183 RIDSKTSWLS-ACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYA 241

Query: 324 KGADRIRLGIKNSRRISSVVDSDDP 348
             A       +++R+I  +   + P
Sbjct: 242 HLAPNHL--TEHARKIDDIFGDNVP 264


>gi|194429805|ref|ZP_03062319.1| integrase for prophage CP-933N [Escherichia coli B171]
 gi|194412152|gb|EDX28460.1| integrase for prophage CP-933N [Escherichia coli B171]
          Length = 372

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 59/355 (16%), Positives = 111/355 (31%), Gaps = 42/355 (11%)

Query: 17  RHGKIIYYFRKG-HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT----- 70
           R G++ Y ++    G+   L          A  +    +  + EY      +  +     
Sbjct: 22  RTGRVYYQYKNPVTGKFHGLGTDKGKAEKIASTANQRIAAAEAEYFMRKIDESPSATKRR 81

Query: 71  ---LKWLISEYRKSAHWG----SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
              LK  +  Y K          +A  +          ++ + G+   +++  +     +
Sbjct: 82  GIRLKAWVDRYLKIQDTRLKNGDIAATTHKEKTRMAAYLVSRLGNHPLKELEVRDFALIL 141

Query: 124 ESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAI--NPCLSVERPKRKTEGIRPWTKEDM 179
           +    K   S+A         ++K A     V    NP  +  +P  K    R  T ED 
Sbjct: 142 DEWLDKDMVSTARVNRGLWVDIYKEAQHAGEVPPGWNPPEATRKPIPKVTRAR-LTMEDW 200

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239
           Q+  +   E    R A    + +G R  D C      + N    I   KT   + + L  
Sbjct: 201 QKIYNATPEKHFIRNAMLLAIVTGQRRDDICHMRFSDVWNEHLHITQGKTRMRLALPLTL 260

Query: 240 G-------FMKLLA-MTPIGKETFFINNDK----QKMNATQFSIWFKAKATKAGV----- 282
                     +++          + I++      + M+    S +F      AG+     
Sbjct: 261 RCDAIGITLKEVIDGCRDRILSPYLIHSRHQKQPKPMSKDNLSDYFAKARDLAGIIPPAG 320

Query: 283 --NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY--TKGADRIRLGI 333
               + H  R  S  +    G     L    G K     + Y  T+G + ++L I
Sbjct: 321 KTPPTFHEQRSLSERLYRAQGIDTKTL---LGHKVQATTDRYNDTRGQEWVKLVI 372


>gi|330448031|ref|ZP_08311679.1| integron integrase family protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328492222|dbj|GAA06176.1| integron integrase family protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 321

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 40/308 (12%), Positives = 92/308 (29%), Gaps = 63/308 (20%)

Query: 83  HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES----RKHTPSSAIQFLT 138
                ++ +  ++  +    IR +       +    I   +      R+ + S+  Q L 
Sbjct: 15  RTHQYSLRTEKNYMYWIRLFIRFNDLKHPEDMGNHEIERFLNHLAVNRQVSVSTQNQALC 74

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERP--KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196
           ++  L+++ VR+E        +++    K         +  ++    +  +   + +L  
Sbjct: 75  AIIFLYRYVVRKEI------SNLKYHNAKLPKRLPTVLSNNEVTAIFNNLT--GEYKLIA 126

Query: 197 EFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPD----GFMKLLAMTPI 250
             L   GLR +++    ++ +  ++    I   K        LP+       K +     
Sbjct: 127 GILYGCGLRINEALSLRIKDINFESKSIFIFNSKGRKDRYTLLPNTIITPLKKQIEYVKR 186

Query: 251 GK------------------------------ETFFINNDK-----------QKMNATQF 269
                                           +  F +  +             ++ + F
Sbjct: 187 IHSDDLHHGYGTASVPTALYRKYQGALKLCGWQYIFPSKHRCTHPYDGYICRHHLHVSAF 246

Query: 270 SIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           S      A  + ++K  +AH  R   AT   + G     +    G   +   E YT    
Sbjct: 247 SKHLHRAAKLSQIDKRVTAHTFRHSFATRLLENGTDIRTVQELLGHTDIRTTEIYTHVVG 306

Query: 328 RIRLGIKN 335
             R G K+
Sbjct: 307 NRRAGTKS 314


>gi|320528560|ref|ZP_08029717.1| site-specific recombinase, phage integrase family [Solobacterium
           moorei F0204]
 gi|320131146|gb|EFW23719.1| site-specific recombinase, phage integrase family [Solobacterium
           moorei F0204]
          Length = 366

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 56/350 (16%), Positives = 104/350 (29%), Gaps = 35/350 (10%)

Query: 11  VTKERTRHGK---IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK 67
           V +++ R+       Y    G  ++              Y S           I      
Sbjct: 3   VYRDKQRNAWFVVTRYKDWTGKVKQTTKRGFRTKHDAQRYESLFIDKKKDSTDIL----- 57

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVES- 125
               K  I  Y +      +  N+ ++ +  F   I+   G+    +IT K I    +  
Sbjct: 58  ---FKNFIEIYLELME-HRIKENTLMTKQYIFYHQIVPYLGEMKLDEITPKDIVHWQDQV 113

Query: 126 RKHTPSSAIQFLTS---MRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQQ 181
            K          T    +  LF +AVR   +  NP        K +   I+ WTKE+   
Sbjct: 114 MKDNNYKQTYLKTIHNQLSALFNYAVRFYGLKNNPARLAGNMGKEEVSEIKFWTKEEYLT 173

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG----------------VQHLQNNIFSIK 225
           F        +   AFE L + G+R  +                      QH++       
Sbjct: 174 FSRAMMNKEESYHAFEILYWCGIRLGELLALTAEDFNFEKKTLRINKSYQHIKGKDVITT 233

Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284
            +   +   + LPD     +           +++    +  +           + GV + 
Sbjct: 234 PKTRKSNRVLTLPDFLADEMQDHISRLPYLKVDDRIFTITKSGLHHEMDRGYRETGVKRI 293

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIK 334
             H +R    ++  + G +A ++    G ++V     Y        L I 
Sbjct: 294 RVHDLRHSHVSMLIEMGFSAVDIANRVGHESVKVTYRYAHLFPNKNLMIA 343


>gi|312887800|ref|ZP_07747387.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
 gi|311299619|gb|EFQ76701.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
          Length = 409

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 52/287 (18%), Positives = 102/287 (35%), Gaps = 42/287 (14%)

Query: 77  EYRKSAHWGSLAVNSRISF---ESYFDQIIRKSGDFDYRKITTKHIRSGVE----SRKHT 129
           EY  +     LA  +  ++   + Y  + +++        +   + +  ++      KH 
Sbjct: 116 EYHNTEMKDKLADGTMKNYYTTQKYIAKFLKEKYHRSDISLAELNYKFILDFETYLSKHQ 175

Query: 130 P---------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
           P         +  ++ +  +  +   AV  +++A +P    ++   K E     TKE++ 
Sbjct: 176 PKDHQKPLHNNGIMKHIERLCKMVNMAVTMDWLAKDPFAKYKQHFDKVERFY-LTKEELS 234

Query: 181 QFKSFWSEGSQPRL-----AFEFLLYSGLRCSDSCRAGVQHL-----QNNIFSIKTQKTG 230
             +    + +  RL      F F  Y+GL   D+      ++      N+      QKT 
Sbjct: 235 TIEK--KKFTIERLQVVKDLFLFSCYTGLAYIDTMNLTAGNIVKGIDGNDWLITSRQKTD 292

Query: 231 TIITVELPDGFMKLL-----AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284
           T + + L     +L+         +   T F     QK NA     + K  A    +NK 
Sbjct: 293 TDVRIPLLPQAEELIKKYQDHPKAVNHGTLFPVISNQKTNA-----YLKEIADLCNINKA 347

Query: 285 -SAHGVRKFSAT-ISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            + H  R   AT I+   G     +    G  T+   + Y K  ++ 
Sbjct: 348 ITFHIARHTFATTITLSNGVPIESVSKMLGHTTIRSTQVYAKVVEQK 394


>gi|95931413|ref|ZP_01314121.1| Integron integrase [Desulfuromonas acetoxidans DSM 684]
 gi|95132531|gb|EAT14222.1| Integron integrase [Desulfuromonas acetoxidans DSM 684]
          Length = 335

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 47/315 (14%), Positives = 96/315 (30%), Gaps = 58/315 (18%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129
           L+ + R+S         +  ++  +  + I        + +    I + +      +K +
Sbjct: 20  LLDQMRESMRSRHYRPRTEETYCQWVRRYILFHKKQHPKDMGESEINAFLTYLAVKKKVS 79

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            S+  Q L+++  L++  + ++   +     V R ++        T+E+++         
Sbjct: 80  ASTQNQALSAILYLYRHVIGRDIGDL---GEVIRARKPKRLPVVMTREEVKAVLDQ--LN 134

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIIT------------- 234
               L    L  SGLR  +  +  VQ L        ++  K G                 
Sbjct: 135 GDKWLMASLLYGSGLRLMECLQLRVQDLDFAGRELLVRDGKGGKDRRTMLPQSLVAALQE 194

Query: 235 -------------------VELPDGFMKLLAMTPIG-------------KETFFINNDKQ 262
                              V LP    +     P               K        + 
Sbjct: 195 HLIHVKKIHDKDLNDGCGKVPLPGALDRKYPQAPWDWRWQWVFPQANRWKNKITGEEGRH 254

Query: 263 KMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
            ++ T      +   ++AGV K    H  R   AT   +AG     +    G K V+   
Sbjct: 255 HVHETILQRAVREAVSRAGVVKRVGCHTFRHCFATHLLEAGYDIRTIQELLGHKDVNTTM 314

Query: 321 TYTKGADRIRLGIKN 335
            YT   ++   G+++
Sbjct: 315 IYTHVLNKGGKGVQS 329


>gi|265755233|ref|ZP_06090003.1| integrase [Bacteroides sp. 3_1_33FAA]
 gi|263234375|gb|EEZ19965.1| integrase [Bacteroides sp. 3_1_33FAA]
          Length = 411

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 45/272 (16%), Positives = 98/272 (36%), Gaps = 29/272 (10%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQ------IIRKSGDFDYRKITTK---HIRSGVESR 126
            +Y K    G  A  + + + + +        I  +  D   +++T          + + 
Sbjct: 118 EDYEKQVDAGMKAKGTLLKYRTVYKHLQEFLTIRYRVKDIALKELTPAFISDFEMFLRTD 177

Query: 127 KHTPSSAIQFLTS-MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           KH  ++ +      +R +   A+  E++  +P    E  K +T      TKE+++     
Sbjct: 178 KHCCTNTVWLYVCPLRTMVFIAINNEWLTRDPFREYEIKKEETT-RSFLTKEEIRLLMEG 236

Query: 186 WSEGSQPRLAFEFLLY---SGLRCSDSCRAGVQHLQN-----NIFSIKTQKTGTIITVEL 237
             + ++  L  +  L+   +GL  +D      +++          +I  QKTG +  + L
Sbjct: 237 RLKNAKQELYRDLYLFCAFTGLSFADMRNLTEENIHTYFDEHEWININRQKTGVVSNIRL 296

Query: 238 PDGFMKLLA--MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFS 293
            D   +++       G    F                 ++ A + G+ K  + H  R  +
Sbjct: 297 LDIAKRIIDKYRGLCGNGRIFPVPH-----YNTCLAGIRSVAKRCGITKHITWHQSRHTA 351

Query: 294 AT-ISADAGATAHELMATYGWKTVDQAETYTK 324
           AT +    G     + +  G K++   + Y K
Sbjct: 352 ATTVFLSNGVPIETVSSMLGHKSIKTTQIYAK 383


>gi|217033697|ref|ZP_03439124.1| hypothetical protein HP9810_5g39 [Helicobacter pylori 98-10]
 gi|216943886|gb|EEC23323.1| hypothetical protein HP9810_5g39 [Helicobacter pylori 98-10]
          Length = 370

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 27/191 (14%), Positives = 66/191 (34%), Gaps = 22/191 (11%)

Query: 167 KTEGIRPWTKEDMQQFKS-------FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-- 217
             +       E++++F              ++ RL  + ++++G+R +++ +  ++    
Sbjct: 161 GNKLPTHLNNEELEKFLEGIDKIEMSAKVRARNRLLIKIIVFTGMRSNEALQLKIKDFTL 220

Query: 218 QNNIFSIKTQKTGTIITVELPDG------FMKLLAMT---PIGKETFFINNDKQKMNATQ 268
           +N  ++I  +  G      +           + L      P+  +  F N     +    
Sbjct: 221 ENGCYTILIKGKGDKYRAVMLKAFHIESLLKEWLMERELYPVKNDLLFCNQKGSALTQAY 280

Query: 269 FSIWFKAKATKAGVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
                +     AG+ +    AH +R   AT+          +    G  +++ +  YT  
Sbjct: 281 LYKQVERIINFAGLRREKNGAHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTH- 339

Query: 326 ADRIRLGIKNS 336
            D+ RL    S
Sbjct: 340 FDKQRLEEAAS 350


>gi|170025347|ref|YP_001721852.1| integrase family protein [Yersinia pseudotuberculosis YPIII]
 gi|169751881|gb|ACA69399.1| integrase family protein [Yersinia pseudotuberculosis YPIII]
          Length = 384

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 40/240 (16%), Positives = 81/240 (33%), Gaps = 22/240 (9%)

Query: 103 IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSV 161
            +         +  K        ++ + ++  Q L+ +R L + A  + +++A  P   +
Sbjct: 116 RQIWESKRDAALMKKKPIPSYVEKQVSQATRSQHLSFIRSLLRAAADEWKWLAKAPV--I 173

Query: 162 ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN- 220
           +  K +++ IR  TK++     +   E  +P + F     +GLR S+        +    
Sbjct: 174 KTRKPQSKRIRWLTKDEAVTLINCMPENFRPVVVFALA--TGLRRSNILDLEWSQIDMQR 231

Query: 221 ---IFSIKTQKTGTIITVELPDGFMKLLAMTP-IGKETFFINNDKQKMNATQFSIWFKAK 276
                  +  K G  I V L D   K+L           F++           +   +  
Sbjct: 232 KVAWIHPENAKAGKAIGVALNDMSCKVLREQIGRSSRYVFVHTSAWHRADGTKTAEVRKM 291

Query: 277 ATKA------GVNKS------AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
                     G+ +S       H +R   A+    AG     L    GW++++    Y  
Sbjct: 292 RVDDNTAWRTGLKRSGITDFRFHDLRHTWASWLVQAGVPLSALQEMGGWESIEMVRRYAH 351


>gi|149921966|ref|ZP_01910409.1| Phage integrase [Plesiocystis pacifica SIR-1]
 gi|149817228|gb|EDM76706.1| Phage integrase [Plesiocystis pacifica SIR-1]
          Length = 531

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 48/267 (17%), Positives = 81/267 (30%), Gaps = 46/267 (17%)

Query: 101 QIIRKSGDFDYRKITTKHI-------RSGVESRKHTPSSAI---QFLTSMRVLFKWAVRQ 150
            +    G+   R+I  + +             R   P SA      L  +R + K A R 
Sbjct: 201 HLSPYFGEMPLRRIGARQVDAYVCAKAQERSKRTGKPLSASTIANHLAVLRRMLKVAHRW 260

Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210
           E +   P +   +P RK       +K + Q         ++    F   L +G+R  +  
Sbjct: 261 ELIDRVPDI---QPPRKGTVDNYLSKREAQALLEHADPLTRDL--FMLALRTGMRLGELR 315

Query: 211 RAGVQHLQ--NNIFSIKTQKT----------GTIITVELPDGFMKLLAMTPIG---KETF 255
                 +   N    ++ Q+T          G   TV++P   +++L     G   KE  
Sbjct: 316 ELRTGDVDLANGRIQVRRQRTQEGEVTPPKYGRKRTVQVPADALEVLRKRLAGLGRKELV 375

Query: 256 F--------------INNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISAD 299
           F                   +  +              AG+ +S   H +R   AT +  
Sbjct: 376 FSKPKGYKAAHRGERAAKGGEPWSHKDLFNAVNRARAGAGIERSVGVHTLRHTFATHAVA 435

Query: 300 AGATAHELMATYGWKTVDQAETYTKGA 326
           AG     +    G   V     Y   A
Sbjct: 436 AGVPLSLVSRQLGHSDVRTTMRYAHHA 462


>gi|323962412|gb|EGB57995.1| phage integrase [Escherichia coli H489]
          Length = 411

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 43/314 (13%), Positives = 86/314 (27%), Gaps = 65/314 (20%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHIRSGVE---- 124
           T   L   + K      L  N+    +S    +            I    I +       
Sbjct: 82  TFGELCDIWTKIKE-TELTTNTMKKTKSQLKTLRIIICESTPISHIRYSDILNYRNELLH 140

Query: 125 ------------SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
                        +  T  +   ++  +  L ++A +  +++  P   V++ +R      
Sbjct: 141 GETLYLDNPRSNKKGRTVRTVDNYIALLCSLLRFAYQSGFISTKPFEGVKKLQRNRIKPD 200

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
           P +K +         +G    L  +F +YSGLR  +      + +      +  ++  TI
Sbjct: 201 PLSKTEFNALMES-EKGQSQNLW-KFAVYSGLRHGELAALAWEDVDLEKGIVNVRRNLTI 258

Query: 233 ITVELPDG----------FMKLLAMTP-----IGKE-----TFFINNDKQK--------- 263
           + +  P                L          G       TF+     +          
Sbjct: 259 LDMFGPPKTNAGIRTVTLLQPALEALKEQYKLTGHHRKSEITFYHREYGRTEKQKLHFVF 318

Query: 264 ------------MNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMA 309
                        + +     + A   +AG+ +    H  R   A      GA    + +
Sbjct: 319 MPRVCNGKQKPYYSVSSLGARWNAAVKRAGIRRRNPYHT-RHTFACWLLTVGANPAFIAS 377

Query: 310 TYGWKTVDQA-ETY 322
             G +T     E Y
Sbjct: 378 QMGHETAQMVYEIY 391


>gi|283786306|ref|YP_003366171.1| putative phage integrase [Citrobacter rodentium ICC168]
 gi|282949760|emb|CBG89379.1| putative phage integrase [Citrobacter rodentium ICC168]
          Length = 388

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 53/278 (19%), Positives = 95/278 (34%), Gaps = 32/278 (11%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           T+K  + EY        L+ ++   ++     +      +   ++T   +++ ++++K T
Sbjct: 91  TVKMYLDEYLVICETRKLSPSTIGGYKKCRSALSSLH-IYPASELTPAALKTWIQNQKTT 149

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR--------PWTKEDMQQ 181
             +    L+ +R     AV    + INP   V   + +++           P +  ++  
Sbjct: 150 LKTIRNQLSFLRSALDEAVTDGVLQINPVSLVTASRYQSDKSEAESSYVVDPLSPAEVDA 209

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-------------NNIFSIKTQK 228
             S         L F F + +GLR S+ C    + +                +      K
Sbjct: 210 LLSATGNKQWENL-FRFAIQTGLRSSELCALRWRDIDFVGKTAHIQSASVVGVIKGTKTK 268

Query: 229 TGTIITVELPDGFMKLL----AMTPIGKETFFINNDKQKMNATQFSIWFKAKA---TKAG 281
            GT   VEL D  M  L      T +   T F +    K  A+  +I  KA      KAG
Sbjct: 269 AGTR-KVELTDEAMSALINQKPFTFMKGATVFEDPKTNKPWASADAIRKKAWVPTLRKAG 327

Query: 282 VNKS-AHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           +     +  R   AT     G     L    G K  + 
Sbjct: 328 IRYRNPYQTRHTFATCHISRGTNLFWLATQMGHKGPEM 365


>gi|265751258|ref|ZP_06087321.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_33FAA]
 gi|263238154|gb|EEZ23604.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_33FAA]
          Length = 405

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 53/322 (16%), Positives = 103/322 (31%), Gaps = 42/322 (13%)

Query: 44  IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII 103
           +P Y+    G   +       ++  +T     S YR+S         ++++   + +   
Sbjct: 100 VPEYL-LQAGEVERERLRVRSKEINST-----STYRQSK-------TTQLNLRQFVE--S 144

Query: 104 RKSGDFDYRKITTKHIRSGV----ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL 159
           R   D  +  IT +   S      +   H        L  +  L   AV +E +  NP  
Sbjct: 145 RGMKDIAFSDITGEFAESFKVFLKKELGHRNGHVNHCLCWLNRLIYIAVDREVLRTNPIE 204

Query: 160 SVERPKRKTEGIRPWTKEDMQQFKSF---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216
            V   K+    +R  ++ ++++              R  F F   +GL  +D+     +H
Sbjct: 205 DVAYEKKDAPKLRHISRNELKRMMETPMPDPMMELARRTFIFSCMTGLAYADTRALHPRH 264

Query: 217 LQ-----NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN----AT 267
           +           I+  KT     + L     ++L       E +   ++ + +       
Sbjct: 265 IGKTSEGRRYIRIRRAKTDVEAFIPLHPVAKQIL-------ELYNTTDEGKPVFPLPVRD 317

Query: 268 QFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
                        G+  N S H  R    T++  AG     +    G   +D  + Y + 
Sbjct: 318 VLWYEVHGMGVALGMRENLSYHMARHSFGTLTLTAGIPIESIARMMGHTNIDSTQVYAQV 377

Query: 326 ADRIRLGIKNSRRISSVVDSDD 347
            DR      +  R+     S D
Sbjct: 378 TDRK--ISSDMDRLMERRKSAD 397


>gi|260588459|ref|ZP_05854372.1| site-specific recombinase, phage integrase family [Blautia hansenii
           DSM 20583]
 gi|260541333|gb|EEX21902.1| site-specific recombinase, phage integrase family [Blautia hansenii
           DSM 20583]
          Length = 426

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 42/287 (14%), Positives = 97/287 (33%), Gaps = 45/287 (15%)

Query: 91  SRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES----RKHTPSSAIQFLTSMRVLFKW 146
           ++  ++  +++ + + G    + I    I   +       K T        T +  +FK 
Sbjct: 137 TKNRYDRQYNESMIEFGKNRIKAIEEYDIEKFLLEAIHVHKMTAKGFSNLRTLILGIFKL 196

Query: 147 AVRQEYV---------AINPCLSV-ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR--L 194
           A +++ V          ++    +  + K + + +  +  E++++  +++ +       L
Sbjct: 197 AKKKKLVQYSIKNVIDDMDISRKLFRKVKHEDDEL-IFMDEEVEKVLNYFKQHKLDLKDL 255

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-------------------KTGTIITV 235
               L Y+G+R  +        +  NI  I +                    KT   I  
Sbjct: 256 GILLLFYTGMRPGELSALTWDDVNGNIIKIHSTEIRYENENKEYIYEVRDFPKTEAGIRD 315

Query: 236 ELPDG-----FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGV 289
            +          ++  + P GK  F      Q++    F    +   +K  +  KS + +
Sbjct: 316 VIVPQSQLWILKEIKTLNPSGKYVF--EQHGQRIRTCLFDDRIRRICSKLKIKEKSLNKI 373

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
           RK  AT   D       ++A  G   +   + Y    +R  +  K+ 
Sbjct: 374 RKTYATTLIDKRVDDSLIIAQMGHTDITTTKNY-YYKNRKNMQQKSL 419


>gi|209548773|ref|YP_002280690.1| integrase family protein [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209534529|gb|ACI54464.1| integrase family protein [Rhizobium leguminosarum bv. trifolii
           WSM2304]
          Length = 368

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 52/340 (15%), Positives = 109/340 (32%), Gaps = 23/340 (6%)

Query: 17  RHGKIIYY---FRKGHGR--RIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
           R G   +Y   +  G  R  R+ L             +       +     SP     TL
Sbjct: 19  RTGSPAWYRCFYEDGTRRTKRVTLGTDDYEEAKRRLDAWYMDQRMRIAQDLSPTDV--TL 76

Query: 72  KWLISEYR-KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK-ITTKHIRSGVESRKHT 129
           K +  +Y    A       + +I    + +    K+   D R  I  +  R+ + ++   
Sbjct: 77  KEVFKDYLDNHAVNLRSYESVKILLRYWEEHWGEKASVADVRNVIEQEKFRTALFAKGLA 136

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            +S  + L + R   + A ++  ++  P + +   +R     RP + E++ +  +  ++ 
Sbjct: 137 INSVNRTLEAGRAAIRRAFKRNVISAMPFVEILPYERDKPKGRPLSVEEIGKLYAECAD- 195

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSI----KTQKTGTIITVELPDGFMK 243
              RL    +L +G R    C    + +     +  +    + Q +     V +     +
Sbjct: 196 -HMRLFMILMLGTGARNEAICTLTWEQIDFEAGLIYLNPPGRKQTSKRRPVVRMTPFVRE 254

Query: 244 LLAMTPIGKETFFINNDKQKMNA-TQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGA 302
            L+     +        K    A             K  V  + +  R   A      G 
Sbjct: 255 QLSKFNDREGRVLSFRGKSFRTAHQGIGKAVGRAKLKGKV--TPYSFRHTVARWLRKEGV 312

Query: 303 TAHELMATYGWK--TVDQAETYTKGA-DRIRLGIKNSRRI 339
           +  E+ A  G K    +  E Y   + D +    +   ++
Sbjct: 313 SPWEVGAQLGHKMPGYNITEMYASASPDYLEKAAEAIEKL 352


>gi|330826233|ref|YP_004389536.1| integron integrase [Alicycliphilus denitrificans K601]
 gi|329311605|gb|AEB86020.1| integron integrase [Alicycliphilus denitrificans K601]
          Length = 332

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 48/308 (15%), Positives = 102/308 (33%), Gaps = 58/308 (18%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129
           L+   R+       ++ +  ++  +  + I   G    R++    + + +      R  +
Sbjct: 18  LLESLRQRIRVLHYSIRTEQAYVDWARRFILFHGKRHPRELGAPDVTAFLTHLAVERNVS 77

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            S+  Q   ++  L+K  ++Q+   ++  +S  +P+R        T+ ++++      +G
Sbjct: 78  ASTQNQAKAAILFLYKEVLQQDLPWLDEVVSARKPRR---LPVVLTQREVRELL-LHLQG 133

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIIT------------- 234
           +Q  L    L  +G+R  ++ R  V+ ++       ++  K                   
Sbjct: 134 TQW-LVSSLLYGTGMRILEALRLRVKDVEFERRELIVREGKGNKDRVTVLPENLIAPLRE 192

Query: 235 -------------------VELPDGFMK--LLAMTPIGKETFFINN-----------DKQ 262
                              V LPD        A T  G +  F +             + 
Sbjct: 193 QMERARMLHRKDLDAGLGAVWLPDALAVKYANAATAWGWQYVFPSAVRSVDPRSGVERRH 252

Query: 263 KMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
            M            A +AG++K  + H +R   AT    AG     +    G K V    
Sbjct: 253 HMLEQSVQKAVALAARRAGIDKPCTPHVLRHSFATHLLQAGYDIRTVQELLGHKDVSTTM 312

Query: 321 TYTKGADR 328
            YT   ++
Sbjct: 313 IYTHVLNK 320


>gi|221642149|ref|YP_002533236.1| integrase/recombinase, putative [Bacillus cereus Q1]
 gi|221243084|gb|ACM15793.1| integrase/recombinase, putative [Bacillus cereus Q1]
          Length = 347

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 38/277 (13%), Positives = 79/277 (28%), Gaps = 31/277 (11%)

Query: 85  GSLAVNSRISF----ESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSM 140
              +  ++  +      +   I    G           I     S+K+  S+  +  T +
Sbjct: 59  KKRSERTKKLYLHDLSHFLRYIKESIGTIKELSHNEVEIYFYQLSKKYAASTLRRKKTVV 118

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEG--IRPWTKEDM-QQFKSFWSEGSQPRLAFE 197
           +   K+      ++ N    +++   K E    R    E++ +   +           F 
Sbjct: 119 QQFLKYVYDNNGLSDNFSSRLKKVSVKKEELVNRDLFPEEVNEILDTLKKTNFFMYSLFF 178

Query: 198 FLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIIT-VELPDGFMKLLAMT---- 248
            L  +GLR  +   A    L      N++ ++    G     V + +  +  L       
Sbjct: 179 LLTTTGLRIEEVANAKWADLAFHPSLNVYLLRVVGKGNKTREVRIFEDVLNDLCRLRQLR 238

Query: 249 -------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--------KSAHGVRKFS 293
                        F    D     A   S +   K  +  +          + H  R F 
Sbjct: 239 KQTSELDASSSSAFLPKADGSHYRADYLSKYVAEKIEETNLPFLRYRKDRITPHTCRHFF 298

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
           A      G    ++    G +++   E Y +   R +
Sbjct: 299 ANHLMGKGVELKKIRDYLGHESIMTTERYLRERTRRQ 335


>gi|119488694|ref|ZP_01621703.1| tyrosine recombinase XerC [Lyngbya sp. PCC 8106]
 gi|119455117|gb|EAW36258.1| tyrosine recombinase XerC [Lyngbya sp. PCC 8106]
          Length = 301

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 45/277 (16%), Positives = 90/277 (32%), Gaps = 26/277 (9%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH- 128
           TL  L +E+ +      LA ++R S+E+    ++   G      I+ + I   ++S +H 
Sbjct: 3   TLAQLATEFLERP---GLAKSTRRSYETALIPLLTFHGRKPVEIISRQVICDYLQSLEHL 59

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ-------- 180
           + ++  +    ++ LF + V   Y+  NP   + R K   E     T E ++        
Sbjct: 60  SINTHHRHQAIIQSLFNYGVAFGYLKSNPIAGLARRKPLLEKGEHGTDEVIRYLNHLQLV 119

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV----- 235
           +     S+  +       L  +G R  +     ++ +   +   +    G          
Sbjct: 120 ELYKVVSQDVRLHAIVRLLHRTGARIGEVLALDLEQVDTIVRKFQVVGKGNKQRWCFYSE 179

Query: 236 ---ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG-----VNKSAH 287
              ++ D ++K    T         N   Q++                           H
Sbjct: 180 DAAQVLDKYIKYYRDTGSTALFTARNPFTQEVTRLSDRRVDSNWCDLTAQSFVLKGARLH 239

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            +R   AT       +  EL A  G + +     Y K
Sbjct: 240 DLRHTFATE-RVGLMSIEELRALMGHEKIQTTLRYQK 275


>gi|326943669|gb|AEA19562.1| site-specific tyrosine recombinase XerS [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 332

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 51/327 (15%), Positives = 100/327 (30%), Gaps = 56/327 (17%)

Query: 67  KPTTLKWLISEYRKSAHWG---SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
            P TL   I+E+ K   W     LAV +     +  D  I    +        +  +  +
Sbjct: 6   SPATLYAYITEFEKFLKWLISNRLAVENGKVVTNICDVPISTLENLPLN--EARTFQRYL 63

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAV-------RQEYVAINPCLSVERPKRKTEGIRPW-- 174
           +       +  +  ++++ LFK+          + Y++ N    +E  K K +       
Sbjct: 64  QGEGIETRAINRTFSALKSLFKYLALNTENEQGENYISRNVMEKIELHKEKVDAAARADD 123

Query: 175 -------TKEDMQ--QFKS-----------------FWSEGSQPRLAFEFLLYSGLRCSD 208
                   K+D+   QF +                 F  +  +       +L +GLR S+
Sbjct: 124 VANMIFNEKDDVAFLQFLANDYGEMLKDISPKKYNFFQRDKERDIAIISLILGTGLRVSE 183

Query: 209 SCRAGVQHLQNNIFSIKTQKTGTI-----ITVELPDGFMKLLAMTPI------GKETFFI 257
                +  +      +K  + G        T    D   + + + P        ++  F+
Sbjct: 184 VASLTISSINFRQGKVKVTRKGNKRSSVLATRSCLDDIQEYIKVRPSKYNCPQDEDLLFV 243

Query: 258 NNDKQKMNATQFSIWFK---AKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWK 314
            N K K          K     ++     +S H +R   AT           L    G  
Sbjct: 244 TNYKGKYTQLTVRAIQKLCDKYSSAFDEKRSPHKLRHTYATNHYKENKDLVLLRDQLGHT 303

Query: 315 TVDQAETYTKGADRIRLGIKNSRRISS 341
           +V+    YT   +  +   +   R+  
Sbjct: 304 SVEVTSIYTNINNEKKR--EAVDRLER 328


>gi|304383251|ref|ZP_07365721.1| integrase [Prevotella marshii DSM 16973]
 gi|304335619|gb|EFM01879.1| integrase [Prevotella marshii DSM 16973]
          Length = 306

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 49/269 (18%), Positives = 89/269 (33%), Gaps = 28/269 (10%)

Query: 96  ESYFDQIIRKSG--DFDYRKITTKHIRSG---VESRKHTPSSAIQFLTSMRVLFKWAVRQ 150
           +    + ++  G  D     IT          ++ R    ++  ++L  +  L   AV Q
Sbjct: 27  DKLLTEFVKDKGMMDITISAITEDLFEEYGFYLKKRGLATATMNRYLCWLSRLMYRAVSQ 86

Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQ---QFKSFWSEGSQPRLAFEFLLYSGLRCS 207
             +  NP  + +  K + + IR   K D+      +    E  Q R  F F  ++GL  +
Sbjct: 87  RIIRCNPFENAKYEKTEQK-IRFLQKSDVAKLMALRVIDKEAEQARRMFIFSCFTGLAIA 145

Query: 208 DSCRAGVQHLQ---NNIFSIK--TQKTGTIITVELPDGFMKLLAM----TPIGKETFFIN 258
           D     + H+Q   +    I+   QKT     V L      ++       P  KE   + 
Sbjct: 146 DMEHLQLGHIQTAADGQKYIRKERQKTKVEFIVPLHPIAEAIINQCKEEQPCMKEMQTVK 205

Query: 259 NDKQKM------NATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMAT 310
                       + +  S          G+    S H  R    T+S  AG     +   
Sbjct: 206 EKGDDFIFHCTCSRSVMSAKLSIVGKACGIRERLSYHMARHTFGTLSLSAGIPIESIAKM 265

Query: 311 YGWKTVDQAETYTKGADRIRLGIKNSRRI 339
            G  ++   + Y +  D      ++  R+
Sbjct: 266 MGHASISSTQIYAQVTDNK--ISEDMDRL 292


>gi|300723172|ref|YP_003712470.1| integrase/recombinase [Xenorhabdus nematophila ATCC 19061]
 gi|297629687|emb|CBJ90293.1| Integrase/recombinase [Xenorhabdus nematophila ATCC 19061]
          Length = 338

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 37/281 (13%), Positives = 100/281 (35%), Gaps = 31/281 (11%)

Query: 88  AVNSRISFESYFDQIIRKSG-----DFDYRKITTKHIRSGVESRKHT---PSSAIQFLTS 139
           +  SR + +S+ + + +  G     D  +  +   HI++ +E        P++   +L++
Sbjct: 57  SKRSRQTMKSFLNIVAKMLGYQNVRDCTWGAMRRHHIQAIMEMLSDAGKAPATINTYLSA 116

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGI----RPWTKEDMQQFKSFWS-----EGS 190
           ++ +   A   + +  +    +++ +          R   + +++            +G 
Sbjct: 117 LKGVALEAWTMKQLDTDNFQHIKQIRSVRGNRLPKGRALERYEIKTLFFTCENDVSTKGL 176

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-ELP----DGFMKLL 245
           +       LL  GLR S+     ++H+     +++    G    +  +P    D   + +
Sbjct: 177 RDAAIIGVLLGCGLRRSEIVSLDMKHIIRREQALRVMGKGNKERLSYMPEGTWDRLTRWV 236

Query: 246 AMTPIGKETFFINNDKQK-------MNATQFSIWFKAKATKAGVNK-SAHGVRKFSATIS 297
                          ++        ++        + +  ++GV K + H +R+  A+  
Sbjct: 237 DEVRGDHAGPLFTRIRRHDDVTDNRLSDQAIYHILETRRIESGVEKFAPHDLRRTFASAM 296

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGAD-RIRLGIKNSR 337
            D G     +    G  ++   + Y +  D R+R   +N  
Sbjct: 297 LDNGEDIVTVKDAMGHSSITTTQKYDRRGDERLRNAARNLD 337


>gi|260683666|ref|YP_003214951.1| integrase [Clostridium difficile CD196]
 gi|260687326|ref|YP_003218460.1| integrase [Clostridium difficile R20291]
 gi|260209829|emb|CBA63704.1| integrase [Clostridium difficile CD196]
 gi|260213343|emb|CBE04934.1| integrase [Clostridium difficile R20291]
          Length = 380

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 44/292 (15%), Positives = 97/292 (33%), Gaps = 37/292 (12%)

Query: 86  SLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTSMRV 142
           ++++ +  ++ S   + I    G +  + +   HI++ ++    K  P S    +  +++
Sbjct: 88  NISLATYNNYVSICKNYINPSIGKYKIQDLHPVHIQNYIDKLSYKLNPQSIKIHINILKL 147

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202
             K A R + +  N   S+E P+ K      + +E M +        ++  L     +  
Sbjct: 148 AIKRAYRLKLIKENVMDSIEAPRYKKFKNEIYDREQMIKLLDLAK-NTEMELPINLAIGL 206

Query: 203 GLRCSDSCRAGVQHLQ---------------NNIFSIKTQKTGTIIT-VELPDGFMKLLA 246
           GLR S+       ++                N    +K  KT + +  +  P   M LL 
Sbjct: 207 GLRISEVLGLTWDNIDFEENTITVNKITSRINGSVILKEPKTESSVRKISSPKELMSLLK 266

Query: 247 MTPIGKETFFINNDKQ-------------KMNATQFSIWFKAKATKAGVNK-SAHGVRKF 292
              I +    + +  +              +     S  FK    K  +     H +R  
Sbjct: 267 EYKIKQNKNLLKSSIRNNNNLLFFNKKCEPIAEDVMSKKFKRFLEKNELPHIRFHDLRHS 326

Query: 293 SATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVV 343
             T+  ++      +    G   +      Y+       +  + S +IS  +
Sbjct: 327 HVTLLINSKVPIKVISERVGHSNISTTLSVYSHVL--KEMDKEASDKISESL 376


>gi|255100622|ref|ZP_05329599.1| integrase/recombinase [Clostridium difficile QCD-63q42]
          Length = 405

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 38/263 (14%), Positives = 81/263 (30%), Gaps = 25/263 (9%)

Query: 83  HWGSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGVE--SRKHTPSSAIQFL 137
            +G     ++ S     +   + +  +G   + ++    IR  +   S++ T +S     
Sbjct: 118 AYGEWNDKTKCSIRQVANPYFKWLLANGIGSFAQVDDSIIRKYLMDCSKRMTLNSIDTIK 177

Query: 138 TSMRVLFKWAVRQEYVAI---NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GS 190
            S++ L  +            +    V   + K +   P   +++             G 
Sbjct: 178 RSLKKLHLYLYEIGITGSSFADTLSFVTPTEHKVKKPVPL--DEIAAVLDVIDRSTAMGK 235

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMK----- 243
           +          +G+R  D        +   N    I  +KTG  + + L     +     
Sbjct: 236 RDYAMIMTAAVTGIRSVDIINLTFDAIDWINGEIRITQRKTGKTLALPLTTDVGEAIQDY 295

Query: 244 LLAMTPIGKETFFINNDKQKMNATQFS---IWFKAKATKAGVNK-SAHGVRKFSATISAD 299
           +L   P     F     K        +     F     K G+ K + HG+R+   T    
Sbjct: 296 ILNGRPKSDLPFVFLRAKSPAVQLGRTLPYQTFNVYRKKLGLPKCTFHGLRRAVGTNMVI 355

Query: 300 AGATAHELMATYGWKTVDQAETY 322
           +G     +    G  +++  + Y
Sbjct: 356 SGVPVTTVSQVLGHSSIEPTKQY 378


>gi|254975655|ref|ZP_05272127.1| integrase [Clostridium difficile QCD-66c26]
 gi|255093041|ref|ZP_05322519.1| integrase [Clostridium difficile CIP 107932]
 gi|255101198|ref|ZP_05330175.1| integrase [Clostridium difficile QCD-63q42]
 gi|255314783|ref|ZP_05356366.1| integrase [Clostridium difficile QCD-76w55]
 gi|255517458|ref|ZP_05385134.1| integrase [Clostridium difficile QCD-97b34]
 gi|255650568|ref|ZP_05397470.1| integrase [Clostridium difficile QCD-37x79]
          Length = 370

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 44/292 (15%), Positives = 97/292 (33%), Gaps = 37/292 (12%)

Query: 86  SLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTSMRV 142
           ++++ +  ++ S   + I    G +  + +   HI++ ++    K  P S    +  +++
Sbjct: 78  NISLATYNNYVSICKNYINPSIGKYKIQDLHPVHIQNYIDKLSYKLNPQSIKIHINILKL 137

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202
             K A R + +  N   S+E P+ K      + +E M +        ++  L     +  
Sbjct: 138 AIKRAYRLKLIKENVMDSIEAPRYKKFKNEIYDREQMIKLLDLAK-NTEMELPINLAIGL 196

Query: 203 GLRCSDSCRAGVQHLQ---------------NNIFSIKTQKTGTIIT-VELPDGFMKLLA 246
           GLR S+       ++                N    +K  KT + +  +  P   M LL 
Sbjct: 197 GLRISEVLGLTWDNIDFEENTITVNKITSRINGSVILKEPKTESSVRKISSPKELMSLLK 256

Query: 247 MTPIGKETFFINNDKQ-------------KMNATQFSIWFKAKATKAGVNK-SAHGVRKF 292
              I +    + +  +              +     S  FK    K  +     H +R  
Sbjct: 257 EYKIKQNKNLLKSSIRNNNNLLFFNKKCEPIAEDVMSKKFKRFLEKNELPHIRFHDLRHS 316

Query: 293 SATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVV 343
             T+  ++      +    G   +      Y+       +  + S +IS  +
Sbjct: 317 HVTLLINSKVPIKVISERVGHSNISTTLSVYSHVL--KEMDKEASDKISESL 366


>gi|134299674|ref|YP_001113170.1| phage integrase family protein [Desulfotomaculum reducens MI-1]
 gi|134052374|gb|ABO50345.1| phage integrase family protein [Desulfotomaculum reducens MI-1]
          Length = 283

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 41/270 (15%), Positives = 96/270 (35%), Gaps = 25/270 (9%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD---FDYRKITTKHIRSG----VESRK 127
           I E++        ++N+  S+ S+ +   R   +     + K+  ++I       +  + 
Sbjct: 4   IEEFKSYLLNQDKSINTIKSYVSHVEDYSRWFQESFGISFTKLYRENILDFKSYLLNIKN 63

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE--GIRPWTKEDMQQFKSF 185
               S    L ++  L ++ + +           +  K +TE       T++D++ F+  
Sbjct: 64  LNAKSINAKLAALMKLNEFILSKNIQEDIVVFKTDYIKVQTEYASPAIITRQDVESFRQT 123

Query: 186 WSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDG- 240
             E    R       L YSG+R S++    +  +        ++  K      V + D  
Sbjct: 124 ILENESKRDYAIVTLLAYSGMRISEAVNLKLSDVNLTAREIVVRYGKGKKQRLVIINDKV 183

Query: 241 -------FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFS 293
                    +   +     E  F++ +  +++ T+ +  F   +       + H +R F 
Sbjct: 184 VNAIKTYLSERTKLRNRDSEYLFVSRESCRISRTRINHIFNGYSD----KITPHMLRHFF 239

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYT 323
            + + + G + HE+    G   +     YT
Sbjct: 240 CSYALEKGWSVHEVAGQAGHANIHTTLIYT 269


>gi|210613944|ref|ZP_03289981.1| hypothetical protein CLONEX_02194 [Clostridium nexile DSM 1787]
 gi|210150904|gb|EEA81912.1| hypothetical protein CLONEX_02194 [Clostridium nexile DSM 1787]
          Length = 659

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 33/274 (12%), Positives = 84/274 (30%), Gaps = 22/274 (8%)

Query: 72  KWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVESR 126
           + L+ EY +       L + +  S ++Y  + ++  G      D  +         ++ +
Sbjct: 348 RKLLQEYARYQIGITGLTIGNIRSQQNYVKKFLKYLGPDVCALDVTEKQIGAYFKEIQQQ 407

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED---MQQFK 183
           +    +  + +  +   +++   ++++   P       ++        + ++   M+   
Sbjct: 408 EIQAETVNRQILDITKFYEYLKIKKHIKAIPFHPEYYEQKVYPIHHDRSVDEDIYMEILH 467

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPD 239
                  + RL F  L  +GLR S+ C           ++    +   K      + +P 
Sbjct: 468 KLNLFPEELRLIFLHLWATGLRISEVCTLKGDAYYWDGEDAWIKVYQIKMKADKMIPVPF 527

Query: 240 GFMKLLAMTPI-----GKETFFINNDKQKMNATQFSIWFKAKATKAGV-NK----SAHGV 289
              +++            +  F            F   F+ +  K  + +       H  
Sbjct: 528 MLYEVMQQYIKKNHIHANDYVFQAEQGGAYRIGSFVKRFRTQCKKHKIADCEYVFKTHDY 587

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           R   AT   D G     +    G    +  + Y 
Sbjct: 588 RHTLATQFYDDGVPIQTIRDYLGHVAEEMTKQYV 621


>gi|193067676|ref|ZP_03048643.1| prophage DLP12 integrase [Escherichia coli E110019]
 gi|218703820|ref|YP_002411339.1| putative integrase; DLP12 prophage [Escherichia coli UMN026]
 gi|293403658|ref|ZP_06647749.1| prophage DLP12 integrase [Escherichia coli FVEC1412]
 gi|298379268|ref|ZP_06989149.1| prophage DLP12 integrase [Escherichia coli FVEC1302]
 gi|300897234|ref|ZP_07115677.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 198-1]
 gi|300903189|ref|ZP_07121121.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 84-1]
 gi|300929099|ref|ZP_07144593.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 187-1]
 gi|301301694|ref|ZP_07207829.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 124-1]
 gi|192959088|gb|EDV89524.1| prophage DLP12 integrase [Escherichia coli E110019]
 gi|218430917|emb|CAR11791.1| putative integrase; DLP12 prophage [Escherichia coli UMN026]
 gi|291429511|gb|EFF02531.1| prophage DLP12 integrase [Escherichia coli FVEC1412]
 gi|298280381|gb|EFI21885.1| prophage DLP12 integrase [Escherichia coli FVEC1302]
 gi|300358976|gb|EFJ74846.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 198-1]
 gi|300404804|gb|EFJ88342.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 84-1]
 gi|300462972|gb|EFK26465.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 187-1]
 gi|300843191|gb|EFK70951.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 124-1]
 gi|315256368|gb|EFU36336.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 85-1]
 gi|324116774|gb|EGC10688.1| phage integrase [Escherichia coli E1167]
 gi|327254885|gb|EGE66501.1| prophage DLP12 integrase [Escherichia coli STEC_7v]
          Length = 387

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 42/265 (15%), Positives = 95/265 (35%), Gaps = 35/265 (13%)

Query: 112 RKITTKHIRSGVESRKHTP---------SSAIQFLTSMRVLFKWA-VRQEYVAINPCLSV 161
           ++I  + +++ +   K  P          +  + L  ++ + + A    +++   P   +
Sbjct: 116 KEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPV--I 173

Query: 162 ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN- 220
           + P  + + +R   KE+ ++      E  +  + F     +GLR S+      Q +    
Sbjct: 174 KIPAVRNKRVRWLEKEEAKRLIDECPEPLKSVVKFALA--TGLRKSNIINLEWQQIDMQR 231

Query: 221 ---IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK-------------QKM 264
                + +  K+   I V L D   K+L         +   + K             +KM
Sbjct: 232 RVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKM 291

Query: 265 NATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
                + W      +AG+ +   H +R   A+    +G     L    GW++++    Y 
Sbjct: 292 RIDSKTSWLS-ACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYA 350

Query: 324 KGADRIRLGIKNSRRISSVVDSDDP 348
             A       +++R+I  +   + P
Sbjct: 351 HLAPNHL--TEHARKIDDIFGDNVP 373


>gi|189462529|ref|ZP_03011314.1| hypothetical protein BACCOP_03218 [Bacteroides coprocola DSM 17136]
 gi|189430690|gb|EDU99674.1| hypothetical protein BACCOP_03218 [Bacteroides coprocola DSM 17136]
          Length = 411

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 45/266 (16%), Positives = 88/266 (33%), Gaps = 35/266 (13%)

Query: 90  NSRISF---ESYFDQIIR---KSGDFDYRKITTKHIRSG----VESRKHTPSSAIQFLTS 139
            +   +     +  + I+      D   ++I+   I         + K   ++  +F+  
Sbjct: 131 ATYRKYEVTRRHLAEFIQSKYNVSDISIKEISPMFITDFELYLRTACKCGYNTTAKFMQF 190

Query: 140 MRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQQFKS---FWSEGSQPRLA 195
            + +   A     +  +P  S + R ++   G    T+++++               R  
Sbjct: 191 FKRIIIIARNNGILVNDPFASYKIRLEKVDRGY--LTEDEIKIILKKKMVSERLEHVRDL 248

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQ-----NNIFSIKTQKTGTIITVELPDG----FMKLLA 246
           F F  ++GL   D       +++     N     K QKT T + V L D       K   
Sbjct: 249 FIFACFTGLAYIDVAGLTQDNIRKSFDGNLWIMTKRQKTNTDVNVPLLDIPKMILKKYKG 308

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS-ADAGAT 303
             P GK    I+N K        + + K  A   G+ K  + H  R   AT +    G  
Sbjct: 309 KLPNGKILPVISNQK-------LNAYLKEIADICGIKKNLTFHLARHTFATTTTLSKGVP 361

Query: 304 AHELMATYGWKTVDQAETYTKGADRI 329
              +    G   ++  + Y +  +  
Sbjct: 362 IETVSKMLGHTNIETTQIYARITNSK 387


>gi|327413047|emb|CAX68076.1| putative phage integrase [Salmonella enterica subsp. VII]
          Length = 337

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 49/317 (15%), Positives = 107/317 (33%), Gaps = 55/317 (17%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG-DFDYRKITTKHIRSGVE---- 124
           T   L+ +Y  +     L   S  S+        R    D     IT + +    E    
Sbjct: 5   TFDLLLEDYFFN---KLLRPASIWSYRKVTQTFTRFLDTDMSPEDITHRDVLLWREFVLH 61

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI--NPC-LSVERPKRKTEGIRPWTKEDMQQ 181
            R  +  +    +T +R LF + +++  +    NP   +V RP +K +  +  T+  ++Q
Sbjct: 62  ERGLSSRTWNNKVTHLRALFTYGMKKGLLPQKENPFYDAVVRPDQKLK--KVLTENQIEQ 119

Query: 182 FK---------SFWSEGSQPRLA-----------FEFLLYSGLRCSDSCRAGVQHL--QN 219
                              PR              + L Y+G+R +   +  +  +   +
Sbjct: 120 VYIVMARFAIMEHRGNAPHPRRCALLPTRFWLVVLDVLRYTGMRQNQLIQLRLGDISFDD 179

Query: 220 NIFSIKTQ--KTGTIITVELPDGF--------MKLLAMTPIGKETFF--------INNDK 261
           ++ +++ +  K      V +             +L        + FF        ++ + 
Sbjct: 180 DVITLRAESAKNHKENRVPIISVLKPGLQQLCAELRLRGMKPHDQFFNVGFLLGKVSAEY 239

Query: 262 QKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHE-LMATYGWKTVDQAE 320
           ++M+      +F+  + + G N S H  R   AT       +  + +    G  +++   
Sbjct: 240 EEMSVQTLRAFFRRLSKECGFNVSPHRFRHTIATAMMKQPDSNLQTVKTLLGHSSINTTL 299

Query: 321 TYTKG-ADRIRLGIKNS 336
            Y  G  D +R  ++  
Sbjct: 300 EYVDGNVDTVREALEAR 316


>gi|256844387|ref|ZP_05549873.1| phage integrase [Lactobacillus crispatus 125-2-CHN]
 gi|256613465|gb|EEU18668.1| phage integrase [Lactobacillus crispatus 125-2-CHN]
          Length = 412

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 51/330 (15%), Positives = 104/330 (31%), Gaps = 46/330 (13%)

Query: 30  GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL--KWLISEYRKSAHWGSL 87
           GRR  L +P  S +  AY  A          +++      +      + +YR     G +
Sbjct: 35  GRRDALKHPFSSAY-QAYKEA-QRVQALYANVSADNISYASFMKDRYLPKYR-----GDV 87

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----KHTPSSAIQFLTSMRVL 143
             ++  +      + +   G+   + I                  + + A    T+ R  
Sbjct: 88  EASTYDTHNLMMLKGVDFLGEIKLKDIKVIDCEKYRTWLLTDSGFSRNYASVIYTAFRQS 147

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFL 199
             +AV    +A NP L  +   +       WT  + ++  +  +  +       + F F 
Sbjct: 148 LDYAVEIGLIASNPSLKTKSIPKGRNIENYWTMPEFEKVLASINTDTFYEELIYVTFLFY 207

Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIK------------------TQKTGTIITVELPDGF 241
              G R ++        +      ++                   +   +  TV +    
Sbjct: 208 YRIGCRVNEGFALRWSDIDLINGKVRFINNLHYSSKLNYELVPYLKNDASRRTVTIDAEL 267

Query: 242 MKLLAMTPIGK-----ETFFINNDKQKMNATQFSIWFKAKATKAG---VNKSAHGVRKFS 293
           +++L      +       F  + D   +N +  S+W K  +  AG   +N    G+R  +
Sbjct: 268 LEVLKKWKKEQAKYNIHDFVFSCDNCPLNKSTLSVWLKRYSKLAGVSRINGR--GLRHSN 325

Query: 294 ATIS-ADAGATAHELMATYGWKTVDQAETY 322
           A+   A+ GA    +    G KT      Y
Sbjct: 326 ASYLIAELGADVLTVSHRLGHKTPMTTLKY 355


>gi|149377412|ref|ZP_01895156.1| integrase/recombinase (XerC/CodV family) protein [Marinobacter
           algicola DG893]
 gi|149358336|gb|EDM46814.1| integrase/recombinase (XerC/CodV family) protein [Marinobacter
           algicola DG893]
          Length = 330

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 44/295 (14%), Positives = 87/295 (29%), Gaps = 55/295 (18%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTSMRV 142
             LA  +  ++  +  + IR  G      + +  + + +     +   S A Q +    +
Sbjct: 27  RGLAYATEKTYVFWIRRFIRFHGRKHPETMGSADVEAFLSHLVLQANASVATQRVALNAL 86

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202
           +F +         N  L+ E  ++  +    ++ E+ +   +      + RL    +  S
Sbjct: 87  IFLYREFMGIPLDN--LNYEAARKPAKLPTVFSPEEAKTTINNLE--GEYRLIAMLIYGS 142

Query: 203 GLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAM------------- 247
           GLR ++  R  V+ +        +++ K        LP   ++ L               
Sbjct: 143 GLRINEVLRLRVKDVDFGMQQLVVRSGKGNKDRITLLPSSLIQSLTRQIEAALHQHSSDL 202

Query: 248 --------TPIGKETFFINN------------------------DKQKMNATQFSIWFKA 275
                    P G    + N                          +  M        F+ 
Sbjct: 203 AKGYGSVYLPAGLARKYPNASQEPGWQYVFPAAELSVDPRSGIRRRHHMIDRTVQKNFRI 262

Query: 276 KATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
               AG+ K A  H  R   AT   ++G     +    G   V   E YT    +
Sbjct: 263 AIRSAGIRKPANSHTFRHSFATRLLESGYDIRTIQKLLGHADVRTTEIYTHVVRK 317


>gi|23500115|ref|NP_699555.1| phage integrase family site specific recombinase [Brucella suis
           1330]
 gi|254702759|ref|ZP_05164587.1| phage integrase family site specific recombinase [Brucella suis bv.
           3 str. 686]
 gi|260568334|ref|ZP_05838803.1| site-specific recombinase [Brucella suis bv. 4 str. 40]
 gi|261753354|ref|ZP_05997063.1| phage integrase [Brucella suis bv. 3 str. 686]
 gi|23463709|gb|AAN33560.1| site-specific recombinase, phage integrase family [Brucella suis
           1330]
 gi|260154999|gb|EEW90080.1| site-specific recombinase [Brucella suis bv. 4 str. 40]
 gi|261743107|gb|EEY31033.1| phage integrase [Brucella suis bv. 3 str. 686]
          Length = 402

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 47/312 (15%), Positives = 108/312 (34%), Gaps = 28/312 (8%)

Query: 49  SALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSG 107
           +A      ++    +  K   T      ++ +      ++  +R      +++ +  K G
Sbjct: 77  AAGKSPAKEKARDKARVKDAETFGAWAEKWLRGYQ---MSETTRNMRRGTYERDLKPKFG 133

Query: 108 DFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165
           +    +IT + +R+  ++   +  PS+A+     M ++F+WA+ +     NP   V    
Sbjct: 134 NRKLIEITHEDLRALTDAIVEQGRPSTAVVCREIMMLVFRWAIERGQKVENPADLVRPST 193

Query: 166 RKT--EGIRPWTKEDMQ---QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-- 218
                   R  T E++    Q+          R A + LL + +R S+   A    +   
Sbjct: 194 IAKFEPRDRALTPEEIGLMYQYMERIGTPPSIRAAAKLLLLTMVRKSELTNATWSEINFI 253

Query: 219 NNIFSIKTQ--KTGTIITVELPDGFMKLLAMTPI---GKETFFINNDKQ--KMNATQFSI 271
           + +++I  +  K      V L    +++         G E    +       M++   + 
Sbjct: 254 DALWTIPKERMKRRNPHLVFLSRQVLEIFTALKTFAGGSEYVLPSRYDSDLPMSSATLNQ 313

Query: 272 WFKAKATKAGVNKS------AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
                   A            H +R+ ++T+  +AG     +      +       Y K 
Sbjct: 314 VLTLTYRLAQKEGQSLGKFGPHDLRRTASTLLHEAGYNTDWIEKCLAHEQKGVRAVYNKA 373

Query: 326 --ADRIRLGIKN 335
              D+ R  +++
Sbjct: 374 EYRDQRRAMLQD 385


>gi|194429305|ref|ZP_03061831.1| Int protein [Escherichia coli B171]
 gi|194412612|gb|EDX28908.1| Int protein [Escherichia coli B171]
          Length = 437

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 30/246 (12%), Positives = 79/246 (32%), Gaps = 46/246 (18%)

Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
            ++ V ++  +  +   ++T++  +F++A    Y+  NP   ++  KR      P T+++
Sbjct: 147 TKNKVAAKGRSVVTVNYYMTTIAGMFQFAADHGYLEANPFQGIKPLKRARAEPDPLTRDE 206

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII----- 233
             +         Q +  +   +Y+G+R  +      + +     +I  ++  T +     
Sbjct: 207 FIRLIDAC-RHQQTKNLWSLAVYTGMRHGELVSLAWEDIDLKAGTITIRRNYTKLGEFTL 265

Query: 234 ----------------TVELPDGFMKLLAMTP--------------IGKETFFINND--- 260
                            + +     ++  +                +  E  F+ N    
Sbjct: 266 PKTEASTNRVVHLIQPAISVLKNQAEMTRLGKQYNIKVQLREYRRSVNHECTFVFNPQVV 325

Query: 261 ------KQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGW 313
                             ++    +AG+ ++ A+  R   A  S  AGA    + +  G 
Sbjct: 326 RKSEQVGFVYKVDSVGDSWETAIKRAGIRHRKAYQSRHTYACWSLSAGANPSFIASQMGH 385

Query: 314 KTVDQA 319
            +    
Sbjct: 386 ASAQMV 391


>gi|312621007|ref|YP_003993735.1| site-specific recombinase, phage integrase family protein
           [Photobacterium damselae subsp. damselae]
 gi|311872728|emb|CBX86822.1| site-specific recombinase, phage integrase family protein
           [Photobacterium damselae subsp. damselae]
          Length = 373

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 50/295 (16%), Positives = 97/295 (32%), Gaps = 27/295 (9%)

Query: 46  AYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSA---HWGSLAVNSRISFESYFDQ- 101
           AY        PK      P+K       L  E+ +S            +   ++S F + 
Sbjct: 73  AYQ-ERAKRDPKLNLHAQPQKPI-----LFDEFGQSFLTHQARLWKPRTITWYDSLFQRN 126

Query: 102 IIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA--INPCL 159
           ++         KIT   ++    ++ H  +     L  +  + K A    Y+    NPC 
Sbjct: 127 LLPAFQGLTLDKITADKVKVWYGTQSHHGA-----LALLSNIMKKAEALGYIPAGSNPCK 181

Query: 160 SVERPKRKTEGIRPWTKEDMQQFKSFWSEGS-----QPRLAFEFLLYSGLRCSDSCRAGV 214
            + +P+++  G    T +++ Q       G+       RL    +L +G RC + C    
Sbjct: 182 GLRQPRQRLTGY-ALTSQELVQLWRALDNGTIHNPTLTRLIRLLVL-TGCRCGELCNLKQ 239

Query: 215 QHLQNNIFSIKTQKTGTIITVELPDGFMKLLA-MTPIGKETFFINNDKQKMNATQFSIWF 273
              +     +   KTGT  T+ L       L          +  +++   +   + +  +
Sbjct: 240 CDYRMGKLYLPDSKTGTK-TIYLSSFARYWLQEQQQESTNEYIFSDELGSIKRGRLTQAW 298

Query: 274 KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           K       +     H +R   AT + + G     +    G +  +    Y   A 
Sbjct: 299 KTLRQSIRLPHIRMHDLRHTYATRALENGEHLLNVGKLLGHELPETTLRYAHLAS 353


>gi|331663926|ref|ZP_08364836.1| type 1 fimbriae regulatory protein FimB [Escherichia coli TA143]
 gi|331059725|gb|EGI31702.1| type 1 fimbriae regulatory protein FimB [Escherichia coli TA143]
          Length = 209

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 23/151 (15%), Positives = 44/151 (29%), Gaps = 15/151 (9%)

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAM 247
           S+         + GLR S+     +  L+       I+  K G      L    +  +  
Sbjct: 26  SRDVCMILLAYFHGLRVSELLSLQLSDLELTTEKIYIQRIKNGFSTVHPLQKEEVIAITN 85

Query: 248 TPIGKETF-----------FINNDKQKMNATQFSIWFKAKATKAG--VNKSAHGVRKFSA 294
               + +            F++   + ++  +F     A    AG  +    H +R    
Sbjct: 86  WLNERNSINVKHFNDNPWLFVSRTGKPLSRQRFYNIVSAAGKNAGLNIKVHPHMLRHACG 145

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKG 325
              AD G     +    G + +     YT  
Sbjct: 146 YSLADNGVDTRLIQDYLGHRNIRHTVIYTAS 176


>gi|315586648|gb|ADU41029.1| tyrosine recombinase XerC [Helicobacter pylori 35A]
          Length = 355

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 36/284 (12%), Positives = 92/284 (32%), Gaps = 55/284 (19%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           L++E+  S + G L++ ++ ++      +       +  +    +I              
Sbjct: 101 LLAEFL-SVYTGGLSLATKKNYRIALLGLFSYIDKQNQDENEKSYIY------------- 146

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS-------FW 186
              L ++  + + A                     +       E++++F           
Sbjct: 147 NITLKNISGVNQSA-------------------GNKLPTHLNNEELEKFLEGIDKIEMSA 187

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDG---- 240
              ++ RL  + ++++G+R +++ +  ++    +N  ++I  +  G      +       
Sbjct: 188 KVRARNRLLIKIIVFTGMRSNEALQLKIKDFTLENGCYTILIKGKGDKYRAVMLKAFHIE 247

Query: 241 --FMKLLAMT---PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKF 292
               + L      PI  +  F N     +         +     AG+ +    AH +R  
Sbjct: 248 SLLKEWLMERELYPIKNDLLFCNQKGSALTQAYLYKQVERIINFAGLRREKNGAHMLRHS 307

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
            AT+          +    G  +++ +  YT   D+ RL    S
Sbjct: 308 FATLLYQKRHDLILVQEALGHASLNTSRIYTH-FDKQRLEEAAS 350


>gi|225352818|ref|ZP_03743841.1| hypothetical protein BIFPSEUDO_04450 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225156425|gb|EEG69994.1| hypothetical protein BIFPSEUDO_04450 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 308

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 36/275 (13%), Positives = 87/275 (31%), Gaps = 29/275 (10%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HTPSSA 133
           +++ ++   G++   +   +      I +   +     +     +  +      H   + 
Sbjct: 16  AQWVRTYKEGAIRDVTMGKYRLTQSWIGKLIPELRLADMDRTAYQQLINGYAQHHERQTT 75

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSV--ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           + F   ++     AV +  +  +P   V  +  + + + ++   + ++    +    G +
Sbjct: 76  MDFHHQIKGAILDAVDEGLIPRDPTRKVIIKGKQPRIKKMKYLNQFELHAMLADLDLGDE 135

Query: 192 PRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSIKTQKT-------------------G 230
               +  LL   +GLR S++             ++   KT                    
Sbjct: 136 ASWDWLILLIAKTGLRFSEALGLTPDDFDFAHQTLSVSKTWDYKNGGGFVPTKNESSVRK 195

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVR 290
             +  +L      LL   P  K  F      +  N+T   +  +          S HG+R
Sbjct: 196 VQLDWQLIMQLSGLLKNLPHDKPIFV---HGKVYNSTANDVLARHCKNVDVPVISIHGLR 252

Query: 291 KFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
              A++   AG +   +    G  ++    ETY  
Sbjct: 253 HTHASLLLFAGVSIASVSRRLGHASMTTTQETYLH 287


>gi|163855761|ref|YP_001630059.1| putative integrase/recombinase [Bordetella petrii DSM 12804]
 gi|163259489|emb|CAP41789.1| putative integrase/recombinase [Bordetella petrii]
          Length = 317

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 41/267 (15%), Positives = 92/267 (34%), Gaps = 34/267 (12%)

Query: 99  FDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVR--QEYVAIN 156
            ++I     D  +++I    +    + R ++ ++  Q L+++   F++ +    E++ + 
Sbjct: 23  IERIC--IADLHHKQIQA-FLLWLEQDRGNSVNTRNQRLSAITSFFRFVMSIYPEHILL- 78

Query: 157 PC---LSVERPKRKTEGIRPWTKEDMQ----QFKSFWSEGSQPRLAFEFLLYSGLRCSDS 209
            C   L+++  KR++  +   + E ++    Q  +    G +  +    L  +G R  + 
Sbjct: 79  -CQQILNIQFKKRQSSTVDYLSIEAVELLLQQPNARKPMGRRDLVLLSVLYDTGARVQEL 137

Query: 210 CRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAM---------TPIGKETFFIN 258
               V  L+      +    K   +  V L      LL                   F N
Sbjct: 138 ANMNVSDLKLTAPATARLLGKGAKVRLVPLLAPTTALLVSYLQEHHGQYLEQKDRPLFCN 197

Query: 259 NDKQKMNATQFSIWFKAKATK--------AGVNKSAHGVRKFSATISADAGATAHELMAT 310
           N ++++     S   +  A +         G   S H +R   A     AG     +   
Sbjct: 198 NVRKRLTRAGISYILQKYAREVSQGNPGLLGTKISPHTLRHSKAMHLLQAGVNLIYIRDL 257

Query: 311 YGWKTVDQAETYTKG-ADRIRLGIKNS 336
            G   +   E Y +   D  +  ++ +
Sbjct: 258 LGHSDIKTTEIYARADLDSKKAALEMA 284


>gi|160939547|ref|ZP_02086896.1| hypothetical protein CLOBOL_04440 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437498|gb|EDP15261.1| hypothetical protein CLOBOL_04440 [Clostridium bolteae ATCC
           BAA-613]
          Length = 394

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 48/340 (14%), Positives = 110/340 (32%), Gaps = 51/340 (15%)

Query: 23  YYFRKGHG---------RRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
           YYFR   G         ++ +  +  +     AY   +  ST +     + +K+  + K 
Sbjct: 14  YYFRANLGFHPITGKQIQKYKSGFKTKKEAREAYSKLILASTEEL----AEKKQQLSFKQ 69

Query: 74  LISE----YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
            I E    + K+     +  ++ ++  S   +           +I   ++++        
Sbjct: 70  FIEETYLPWYKT----QVKESTYLNRRSTIQKHFSYFYKMTVDEIKPSNVQNWQLELAKK 125

Query: 130 --PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
             P+        + + F  A+       NP   +   K K   +  WT ++ Q+  S   
Sbjct: 126 FNPNYIRIVQGMLSIAFDRAIVLGLAKKNPSRMIGNIKSKKTKVDFWTLDEFQKVISLLY 185

Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-------------- 229
           +G        +++  L  +G+R  ++       +      +   KT              
Sbjct: 186 KGDYYEHYLFISYWLLFMTGMRIGEAAALQWSDINFETGLLSITKTLYYKTMDEYKFVEP 245

Query: 230 ---GTIITVEL-PDGFMKLLAMTPIGKET-----FFINNDKQKMNATQFSIWFKAKATKA 280
               +I T+ +  D   +L A   + ++        ++ +    +        K  A  A
Sbjct: 246 KTQASIRTIYIDTDTIKELKAWQEVQQKVLKDCDLVLSYNGIPTSKHTLPRALKKLAGLA 305

Query: 281 GVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
           GV++   H +R   A++    G     +    G + +   
Sbjct: 306 GVHRIKIHALRHSHASLLISMGENPLLIKERLGHEKIQTT 345


>gi|16519919|ref|NP_444039.1| DNA integration/recombination/inversion protein [Sinorhizobium
           fredii NGR234]
 gi|2497418|sp|P55634|Y4RA_RHISN RecName: Full=Putative integrase/recombinase y4rA
 gi|2182598|gb|AAB92467.1| DNA integration/recombination/inversion protein [Sinorhizobium
           fredii NGR234]
          Length = 409

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 44/317 (13%), Positives = 98/317 (30%), Gaps = 25/317 (7%)

Query: 32  RIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKS-AHWGSLAVN 90
           R++ P   +   +   ++ L       E I      P+ ++  +  Y +      +L+  
Sbjct: 76  RVQRPKLGDDAALRHLLAFLRSQNAIAEEIEVD-HNPSAVEQHVQAYERHLRDARALSRQ 134

Query: 91  SRISFE---SYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFK 145
           + I++      F       G+    ++    +   V+ +  +     A    T++R    
Sbjct: 135 TIINYRPVVRDFLSFRFGDGEISLAQLRAADVTDFVQKKVSRLNMRRAKIVTTALRSFLS 194

Query: 146 WAVRQEYVAINPCLSVERPKR--KTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFEFL 199
           +A  +  +  +   +V        +   R   ++D+ +  S        G +       L
Sbjct: 195 YARYRGDITSDLAAAVPIVANWSLSSIPRAIGRDDVSRLLSSIDRDTPIGCRDYAMILAL 254

Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL-----AMTPIGKET 254
              GLR S+     +  +      I+ +       + LP    + +        P     
Sbjct: 255 ARLGLRSSEVVTLELDDIDWVAGRIRVRGKHGRNELPLPADVGEAIADYLWRARPRNASR 314

Query: 255 FFINNDKQKM----NATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHEL 307
                DK  +      +      +    + G++   K  H  R   A+     GA+  E+
Sbjct: 315 RVFLRDKAPIRGFVGPSGLGSIVRRSLKRTGIDSPTKGTHQFRHGLASEMLRGGASLGEI 374

Query: 308 MATYGWKTVDQAETYTK 324
               G + V     Y K
Sbjct: 375 GEVLGHRHVQTTAIYAK 391


>gi|312109773|ref|YP_003988089.1| integrase [Geobacillus sp. Y4.1MC1]
 gi|311214874|gb|ADP73478.1| integrase family protein [Geobacillus sp. Y4.1MC1]
          Length = 297

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 37/254 (14%), Positives = 96/254 (37%), Gaps = 22/254 (8%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFES----YFDQIIRKSGDFDYRKITTKHIRS----- 121
            +  + ++ +     +    +   + +    ++  +  +  + +  ++T + I+      
Sbjct: 28  FQIALEKFLEDCEIRNCRPQTIQYYRNEMSVFYKLLREQEIEVNIYRMTPEIIKQNVILY 87

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI--NPCLSVERPKRKTEGIRPWTKEDM 179
               +K    +    L ++R  F +  R++ ++   NP   ++  K + + +  +TKE++
Sbjct: 88  MKNQKKCKTVTINTRLRALRAFFNFLEREKIISKKQNPFHEIKLLKDRKKAVPTYTKEEI 147

Query: 180 QQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTII 233
                  +     G +       LL +G+R S+     +  +    +   I+  K     
Sbjct: 148 HILFKQPNLRTFTGVRDLTLMMLLLETGIRASECVGIRLGDIDFQRSRILIQNTKGYRQR 207

Query: 234 TVEL----PDGFMKLLAMTPI-GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHG 288
            V +     +   K LA+      +  F++ D   +   Q     ++   K G++ + H 
Sbjct: 208 YVPIQKQMKEQLKKYLAIRGTLDHDYLFVSIDDTPLTKRQMQAQIESYGKKCGIHATCHK 267

Query: 289 VRKFSATISADAGA 302
            R   A +S +AGA
Sbjct: 268 FRHTFARLSVEAGA 281


>gi|307280594|ref|ZP_07561642.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0860]
 gi|306503960|gb|EFM73177.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0860]
          Length = 393

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 53/324 (16%), Positives = 104/324 (32%), Gaps = 60/324 (18%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132
           WL  EY+K+    +     R   +     I+   G     ++T K ++  V         
Sbjct: 77  WL-DEYKKTVRESTFIATERRMKK----HILPTFGKMRLERLTVKIVQKSVNEWYKKNEM 131

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR-----KTEGIRPWTKEDMQQFKSFWS 187
               L+    +  +AV  E +  NP   + +P       K    + +TK++++ F +   
Sbjct: 132 GKVLLSYASRVCDYAVGLEIIDSNPFKKITKPSSLKKVEKNTKRKFYTKDELEHFLNTAD 191

Query: 188 EGSQPR---------------LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
             +                    F  L ++G+R  ++       +      +   KT  I
Sbjct: 192 SIANQAKEESLVLKYYADLDCAIFRLLSFTGIRVGEALALNWNDIDLKKQVVNINKTTAI 251

Query: 233 IT--VELPDG-----------------------FMKLLAMTPIGK---ETFFINNDKQKM 264
            T  + + D                          +  A+   G    +  F   D    
Sbjct: 252 STSGLTINDPKTPNSIRKISFDNKTAYILKKWKLRQCEALMKKGGFKTQLIFTKIDGTMF 311

Query: 265 NATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADA-GATAHELMATYGWKTVDQA-E 320
            +       K  A KA ++ S   HG R   AT+  ++    +  +    G  ++    +
Sbjct: 312 RSQDIYQRSKRLAEKANLH-SIGCHGFRHTHATLLFESDNVRSKIIQERLGHSSLQITMD 370

Query: 321 TYTKGADRIRLGIKNSRRISSVVD 344
           TYT  +D   +  + +   SS V+
Sbjct: 371 TYTHVSD--EVTKEATDAFSSYVN 392


>gi|224027003|ref|ZP_03645369.1| hypothetical protein BACCOPRO_03762 [Bacteroides coprophilus DSM
           18228]
 gi|224020239|gb|EEF78237.1| hypothetical protein BACCOPRO_03762 [Bacteroides coprophilus DSM
           18228]
          Length = 407

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 41/254 (16%), Positives = 78/254 (30%), Gaps = 26/254 (10%)

Query: 90  NSRISFESYFDQIIRKSG-----DFDYRKITT---KHIRSGVESRKHTPSSAIQFLTSMR 141
           + R S  S  + +    G     D  +  +T    K  +  +  + ++ S+    L  ++
Sbjct: 127 SYRQSKTSQLN-LREFIGLRGMNDIAFEDLTEEFGKSYKLFLIGKGYSASNTNHNLCWLQ 185

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS---FWSEGSQPRLAFEF 198
            L   AV +  +  NP   V   K+ +   R  ++ D+                R  F F
Sbjct: 186 RLVYIAVDRGLLKFNPLEDVGYEKKGSPKRRHISRNDLLLIMETPMEDKALELARRMFVF 245

Query: 199 LLYSGLRCSDSCRAGVQHLQ-----NNIFSIKTQKTGTIITVELPDGFMKL--LAMTPIG 251
              +GL   D       H+            K  KT     + L     ++  L  T   
Sbjct: 246 SSLTGLAYVDLRNLYPHHIGMTADGRKYIREKRAKTNNEAFIPLHPIAEQIMSLYNTADD 305

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMA 309
            +  F  +     +       F +     G+  N +AH  R         +G +   +  
Sbjct: 306 SKPVFPLS-----SRDSMWFEFHSLGVALGITENLTAHVARHTFGVNMVTSGISMESIAK 360

Query: 310 TYGWKTVDQAETYT 323
             G  ++   + Y 
Sbjct: 361 MMGHSSLSSTQVYA 374


>gi|126455326|ref|YP_001064397.1| phage integrase family site specific recombinase [Burkholderia
           pseudomallei 1106a]
 gi|167822126|ref|ZP_02453597.1| site-specific recombinase, phage integrase family protein
           [Burkholderia pseudomallei 9]
 gi|226193219|ref|ZP_03788829.1| site-specific recombinase, phage integrase family [Burkholderia
           pseudomallei Pakistan 9]
 gi|242315686|ref|ZP_04814702.1| site-specific recombinase, phage integrase family [Burkholderia
           pseudomallei 1106b]
 gi|126228968|gb|ABN92508.1| site-specific recombinase, phage integrase family [Burkholderia
           pseudomallei 1106a]
 gi|225934819|gb|EEH30796.1| site-specific recombinase, phage integrase family [Burkholderia
           pseudomallei Pakistan 9]
 gi|242138925|gb|EES25327.1| site-specific recombinase, phage integrase family [Burkholderia
           pseudomallei 1106b]
          Length = 409

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 38/301 (12%), Positives = 91/301 (30%), Gaps = 22/301 (7%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWL--ISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSG 107
           + G           R    +L  +   +EY         +     +     ++ I    G
Sbjct: 81  VAGGVSPVADARKDRGAVKSLDTIHEFAEYWIEQQMMGKSAEYLRTTRRALEKDIYPAIG 140

Query: 108 DFDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV--ER 163
                 +T   + +  +  K    P  A+     ++ ++++A+ ++ V  NP  ++    
Sbjct: 141 GKSVSDVTPGDVLAICDRIKKRGAPKMALSTRNILKRIYEYAIARQLVMSNPAQAIVARF 200

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQPR---LAFEFLLYSGLRCSDSCRAGVQHLQNN 220
              +    R  +  ++ +        S  R   LA   L+ + +R S+   A       +
Sbjct: 201 VATQASRDRVLSPNEIGRVLRAVYASSIRRPLKLAIHLLVLTMVRKSELIEARWDEFDLD 260

Query: 221 IFSIK----TQKTGTIITVELPDGFMKLLA---MTPIGKETFFINNDK--QKMNATQFSI 271
               +      K      V L    + +L     T    +  F ++    + +  +  + 
Sbjct: 261 ASIWRIPAERMKKDREHWVYLAPQAVAMLRELHATRTSHQYVFPSSRGADRPIAKSTLNQ 320

Query: 272 WFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG--ADRI 329
             +        +   H  R+ ++T   + G  +  +              Y +   AD  
Sbjct: 321 AVR-ALDMDVQHFVLHDFRRTASTHLHEMGQPSDAIEKALAHSIKGIKGVYNRAEYADER 379

Query: 330 R 330
           R
Sbjct: 380 R 380


>gi|16128520|ref|NP_415069.1| DLP12 prophage; predicted integrase [Escherichia coli str. K-12
           substr. MG1655]
 gi|89107403|ref|AP_001183.1| predicted integrase [Escherichia coli str. K-12 substr. W3110]
 gi|170080119|ref|YP_001729439.1| DLP12 prophage; integrase [Escherichia coli str. K-12 substr.
           DH10B]
 gi|238899817|ref|YP_002925613.1| DLP12 prophage; putative integrase [Escherichia coli BW2952]
 gi|124695|sp|P24218|INTD_ECOLI RecName: Full=Prophage DLP12 integrase; AltName: Full=Prophage QSR'
           integrase
 gi|41811|emb|CAA35974.1| int [Escherichia coli]
 gi|146497|gb|AAA65483.1| integrase [Escherichia coli]
 gi|455171|gb|AAA24030.1| DLP12 integrase [Escherichia coli]
 gi|1778451|gb|AAB40734.1| DLP12 integrase [Escherichia coli]
 gi|1786748|gb|AAC73638.1| DLP12 prophage; predicted integrase [Escherichia coli str. K-12
           substr. MG1655]
 gi|85674673|dbj|BAE76313.1| predicted integrase [Escherichia coli str. K12 substr. W3110]
 gi|169887954|gb|ACB01661.1| DLP12 prophage; predicted integrase [Escherichia coli str. K-12
           substr. DH10B]
 gi|238860795|gb|ACR62793.1| DLP12 prophage; predicted integrase [Escherichia coli BW2952]
          Length = 387

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 42/265 (15%), Positives = 95/265 (35%), Gaps = 35/265 (13%)

Query: 112 RKITTKHIRSGVESRKHTP---------SSAIQFLTSMRVLFKWA-VRQEYVAINPCLSV 161
           ++I  + +++ +   K  P          +  + L  ++ + + A    +++   P   +
Sbjct: 116 KEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPV--I 173

Query: 162 ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN- 220
           + P  + + +R   KE+ ++      E  +  + F     +GLR S+      Q +    
Sbjct: 174 KIPAVRNKRVRWLEKEEAKRLIDECPEPLKSVVKFALA--TGLRKSNIINLEWQQIDMQR 231

Query: 221 ---IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK-------------QKM 264
                + +  K+   I V L D   K+L         +   + K             +KM
Sbjct: 232 RVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKM 291

Query: 265 NATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
                + W      +AG+ +   H +R   A+    +G     L    GW++++    Y 
Sbjct: 292 RIDSKTSWLS-ACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYA 350

Query: 324 KGADRIRLGIKNSRRISSVVDSDDP 348
             A       +++R+I  +   + P
Sbjct: 351 HLAPNHL--TEHARKIDDIFGDNVP 373


>gi|82540454|ref|XP_724543.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23479221|gb|EAA16108.1| hypothetical protein [Plasmodium yoelii yoelii]
          Length = 453

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 51/294 (17%), Positives = 106/294 (36%), Gaps = 36/294 (12%)

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
           +   LK  I +         ++ N+      +++ I+ K G ++  ++ + +  S ++  
Sbjct: 151 EKIKLKKYIEDIYLPLRKEEVSANTYRVERGFWNDILPKLGKYELHELGSNNWESFLKYL 210

Query: 127 KHT---PSSAIQFLTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPWTKEDMQQ 181
           K     P +   + ++ +   K+A+ ++Y+    N    +++         P + ++++ 
Sbjct: 211 KSKNCSPRTMALYQSTYQQSLKYALYRDYLKSVHN-FRKIKKSTIPRRKTIPLSPKEIEL 269

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTG-TIITVELP 238
                S G   R  F   +  GLR S+  R   + +  +     IK +KT  +   + L 
Sbjct: 270 LLK--SSGDMHRAIFATSIGIGLRPSEVLRILWEDINFEKKEIFIKGEKTKYSNTAIPLT 327

Query: 239 ----DGFMKL--LAMTPIGKETFFINNDKQKMNA-------TQFSIWFKAKATKAGVNKS 285
               +  +K   +   P     F+      K N          F    K  A +AG+  S
Sbjct: 328 NFAYNELIKWWEIEKKPSKGLCFYQETINNKFNYTNTKTPLKTFKTALKGAAKRAGIEIS 387

Query: 286 AHG---------VRKFSATISADAG--ATAHELMATYGWKTVDQ-AETYTKGAD 327
             G         +R   ATI+A +          A     +     +TYTK  +
Sbjct: 388 EDGKKRRIFPYLLRHSFATIAATSNPPVPLPVAQAIMRHSSSKMLLDTYTKAGN 441


>gi|306829388|ref|ZP_07462578.1| phage integrase family site-specific recombinase [Streptococcus
           mitis ATCC 6249]
 gi|304428474|gb|EFM31564.1| phage integrase family site-specific recombinase [Streptococcus
           mitis ATCC 6249]
          Length = 338

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 45/283 (15%), Positives = 94/283 (33%), Gaps = 40/283 (14%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR------KHTPS 131
           Y +S     ++ ++  + +     +  + G    + IT + +++            ++ +
Sbjct: 14  YYQS----EVSEHTYATRQPSLKIVFNRFGKKKLKDITVREVQNFRTWLLAKNCGNYSQA 69

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-FKSFWSEGS 190
            A     + R    +AV  +Y+  N  + V+   +       WTK D ++   +      
Sbjct: 70  YAGLTFGTFRKSLDFAVDMQYLQKNVSMKVKSIPKGKSIAEYWTKNDFEEVISNICISDF 129

Query: 191 QPRLAFEFL---LYSGLRCSDSCRAGVQHLQ-----------------NNIFSIKTQKTG 230
              L F  L     +G+R ++        +                  NN       KT 
Sbjct: 130 YEHLCFVMLWLYFCTGVRVNEGTAIWWNDIDFEKKELRVAHMLIMTNKNNWQRQNHTKTD 189

Query: 231 TIITV-ELPDGFMKLLAMTP-----IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284
             + +  L D  +++L         +GK  F ++ D   M  +  S   K  A  A V  
Sbjct: 190 AGLRIVTLDDDTIQILKAWKERQSELGKVNFVLSYDGNPMLKSTISRIIKRYAKLANVPL 249

Query: 285 -SAHGVRKFSATISA-DAGATAHELMATYGWKTVDQA-ETYTK 324
             A G+R   A+    +  A+   +    G  + +   + Y  
Sbjct: 250 IQAKGLRHSHASYLINELNASVLIVSKRLGHSSPEITLKHYAH 292


>gi|291550900|emb|CBL27162.1| Site-specific recombinase XerD [Ruminococcus torques L2-14]
          Length = 382

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 55/385 (14%), Positives = 122/385 (31%), Gaps = 68/385 (17%)

Query: 17  RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTG---STPKREYINSPRKKPTTLKW 73
           R G+ IY  RK      R  Y  +    P Y S       +  K++     +  P   + 
Sbjct: 3   RRGENIYK-RKDGRWEARYIYAFKEDGSPRYRSIYAADYLTVKKKQNDAKRKMDPCLFQS 61

Query: 74  LISEYRKSAHWGSL----------AVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSG 122
           +    +K+  +  L            ++ + +   F   I    GD      + K     
Sbjct: 62  V--RMKKNISFYGLLWLERLKPSSKESTYVRYHYLFSHYISPMIGDRLVYTFSNKDCEVF 119

Query: 123 VESR---------KHTPSSAIQFLTSMRVLFKWAVRQEYVAI-NPCLSVERPKRKTEGIR 172
           +               P +     + ++++ K A ++  +++ NP   +   K   + +R
Sbjct: 120 LNRLLVSGKSDGSGLAPKTVTDIRSVVKLILKTAEKEGELSLCNP--ELCSVKSVRKPLR 177

Query: 173 PWTKEDMQQFKSFWSEG-SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-- 229
             + ++ Q  + +     +   +     LY+G+R  + C    + +      ++  KT  
Sbjct: 178 ILSLKEQQDLQDYLLGNLTHKNIGTLIALYTGVRLGELCAMQWKDIHFQEQYLEISKTLH 237

Query: 230 -----------------------GTIITVELPDGFMKLLAMTPIGK----ETFFINNDKQ 262
                                   +I  + +PD   ++L           E + +    +
Sbjct: 238 RVKDHTDDSEHNTKIIITPPKTESSIRNIPIPDFLFEILQQYIQSHKIDPEAYILT--GK 295

Query: 263 KMN---ATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           KM+         +FK    K  +     H +R   AT   + G     L    G   ++ 
Sbjct: 296 KMSFREPRSIEYYFKKTLKKCQIEPLHFHCLRHTFATRCVELGFDMKTLSEILGHSNINT 355

Query: 319 A-ETYTKGADRIRLGIKNSRRISSV 342
               Y   +   +   +N  ++++V
Sbjct: 356 TLNRYVHPSMEQK--QQNMDKLNAV 378


>gi|265750810|ref|ZP_06086873.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|263237706|gb|EEZ23156.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 405

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 41/253 (16%), Positives = 87/253 (34%), Gaps = 23/253 (9%)

Query: 87  LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKW 146
           L    +  ++     +       +   I + H    ++ +    +S+ + L  ++ +   
Sbjct: 146 LREFVQQKYKREDLYLRE----LNLNFIQSFHSFLRID-KGMAQNSSTKHLKLLKKIINL 200

Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ---FKSFWSEGSQPRLAFEFLLYSG 203
           +V   Y+A NP  + +  +R+   I    +E++++   F +      + +  F F  ++G
Sbjct: 201 SVANSYMAFNPFSTYK-VEREPVEIDFLDEEELRKIINFDTPLPRLERAKDMFLFGCFTG 259

Query: 204 LRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFIN 258
           L   D      +H + +         +  KTG +  + L      +L     G E     
Sbjct: 260 LSYIDIKTLTPEHFEKDSAGRIWIKKRRVKTGVLSRIPLLPIAKLILDKYK-GGEKLLPI 318

Query: 259 NDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSA-TISADAGATAHELMATYGWKT 315
            D         + + K  A   G+NK    H  R   A T++     +   +    G   
Sbjct: 319 QD-----PADINKYLKDIAILCGINKRICFHTSRHTFASTVTLANNISLEVVSKMLGHTN 373

Query: 316 VDQAETYTKGADR 328
                 Y K  D+
Sbjct: 374 TRMTAHYAKLIDK 386


>gi|331269369|ref|YP_004395861.1| phage integrase family site specific recombinase [Clostridium
           botulinum BKT015925]
 gi|329125919|gb|AEB75864.1| phage integrase family site specific recombinase [Clostridium
           botulinum BKT015925]
          Length = 357

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 42/286 (14%), Positives = 86/286 (30%), Gaps = 39/286 (13%)

Query: 70  TLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128
           T   L + Y      +      +  S+++ F +  +   +   ++I    I+S V+    
Sbjct: 69  TFNQLTTIYLDHITLYKEYH--TVKSYKNCFSKF-KDLNNKRIKEIKKHDIQSIVDKLLK 125

Query: 129 ---TPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIR-PWTKEDMQQFK 183
                S+  +++  + + F +       +   P ++++ PK K    +   TK+ + +  
Sbjct: 126 EHLKYSTVKKYVGILNMFFIYVKDDLNLIFELPTVNIKIPKEKEYSNKIALTKKQLNKLL 185

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK--------------- 228
               +     +AF     +G+R  +        +     SI   K               
Sbjct: 186 KELQDNKYYMVAF-IAANTGMRLGEVLGLTWDSIDFKRSSITVNKQWKVLKTRKSGFGSL 244

Query: 229 --TGTIITVELPD----GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK-AKATKAG 281
               +  T+ L               P       INN     NA+    +        AG
Sbjct: 245 KSKNSYRTIPLSPNTLKELKNYKKNNPTD-----INNRVTPFNASSIDKYLNPKLKELAG 299

Query: 282 VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           +  + H +R   AT     G          G       + Y+   D
Sbjct: 300 I--TMHELRHTYATALISNGVDFKTAAKILGHTVEMTMKIYSHVTD 343


>gi|317475379|ref|ZP_07934643.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
 gi|316908407|gb|EFV30097.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
          Length = 411

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 51/273 (18%), Positives = 100/273 (36%), Gaps = 31/273 (11%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQ------IIRKSGDFDYRKITTK---HIRSGVESR 126
            +Y K    G  A  +   +   +        I     D   +++T          + + 
Sbjct: 118 EDYEKQVEAGMKAKGTLEKYRIVYKHLQEFLDIRYHVKDIALKELTPAFISDFEMFLRTD 177

Query: 127 KHTPSSAIQFLTS-MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           KH  ++ +      +R +   A+  E++  +P    E  K +T      TKE+++     
Sbjct: 178 KHCCTNTVWLYVCPLRTMVFIAINNEWLTRDPFREYEIKKEETT-RSFLTKEEIRLLMDG 236

Query: 186 WSEGSQPRLAFEFLLY---SGLRCSDSCRAGVQHLQN-----NIFSIKTQKTGTIITVEL 237
             + ++  L  +  L+   +GL  SD      ++++         +I  QKTG +  + L
Sbjct: 237 KLKNAKQELYRDLYLFCAFTGLSFSDMRNLTEENIRTYFDEHEWININRQKTGVVSNIRL 296

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW---FKAKATKAGVNK--SAHGVRKF 292
            D     +A   IGK       D +      ++      +A A + G+ K  + H  R  
Sbjct: 297 LD-----IANRIIGKYRGLC-EDGRIFPVPHYNTCLAGIRAVAKRCGITKHITWHQSRHT 350

Query: 293 SAT-ISADAGATAHELMATYGWKTVDQAETYTK 324
           +AT I    G     + +  G K++   + Y K
Sbjct: 351 AATTIFLSNGVPIETVSSMLGHKSIKTTQIYAK 383


>gi|302385130|ref|YP_003820952.1| integrase family protein [Clostridium saccharolyticum WM1]
 gi|302195758|gb|ADL03329.1| integrase family protein [Clostridium saccharolyticum WM1]
          Length = 399

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 58/372 (15%), Positives = 111/372 (29%), Gaps = 66/372 (17%)

Query: 13  KERTRHGKIIYYF---RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
           K   R+   ++Y    R   G             +    S   G   +++     +++ T
Sbjct: 15  KTTVRYFANVWYAVESRSITGPMRDKEKEARKDEVDIMRSIEAGQGKRKQ-----KERMT 69

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRK- 127
           T++ +   +  +    + A ++   +E ++ D I    GD    K+   HI+  V   K 
Sbjct: 70  TIQEIFDIWHDATAPPTYANSTWRIYERFYNDYIKEVFGDKAVSKVKATHIQKYVNLMKQ 129

Query: 128 -HTPSSAIQFLTSMRVLFKWAVRQEYVAI---NPCLSVERPKRKTEGIRPWTKEDMQQFK 183
            H+P +  + +  +  LF +AV          NP   + R          W+ +++  F 
Sbjct: 130 SHSPGTINKCINILSNLFGYAVSPLKCITPMENPMEGITRCTVPVRKKITWSDDEIAYFL 189

Query: 184 SFWSE-GSQPRLAFEFLLYSGLRCSDSCRAG-------------VQHLQNNIFSIKTQKT 229
           +      S     F      G R  + C                     +N       KT
Sbjct: 190 NLQEVMESHYYPMFCLSALLGARPGEVCGLTENCLSNKPTYLIDFDRGYDNWECETNLKT 249

Query: 230 G-TIITVELPDGFMKLLAMTPI-------------GKETFFINNDKQKMNATQFSIWFKA 275
             +     +P     LL    I               +  F++ +   +   Q++  FK 
Sbjct: 250 HQSHRQPPIPKHLYDLLHKRLIWKKKNRLEDKSWSDNDYLFVSQNGNPIKPKQYAYAFKR 309

Query: 276 KATKAGVNK----------------------SAHGVRKFSATISADAGATAHELMATYGW 313
               A  NK                      + +G R   AT +      A  + +  G 
Sbjct: 310 --LLAAHNKAMEEYETEHGSLPNGEMKLPYITLYGFRTSFATNNMRRCPNAALISSIMGN 367

Query: 314 KTVDQAETYTKG 325
                 + YT+ 
Sbjct: 368 SPKTLIQFYTQS 379


>gi|290475364|ref|YP_003468252.1| integrase/recombinase [Xenorhabdus bovienii SS-2004]
 gi|289174685|emb|CBJ81481.1| Integrase/recombinase [Xenorhabdus bovienii SS-2004]
          Length = 305

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 32/273 (11%), Positives = 95/273 (34%), Gaps = 32/273 (11%)

Query: 88  AVNSRISFESYFDQIIRKSG-----DFDYRKITTKHIRSGVESRKHT---PSSAIQFLTS 139
           +  SR + +S+ + + +  G     D  +  +   H+++ +E    +   P++   +L +
Sbjct: 24  SKRSRQTMKSFLNIVAKMLGYQNVQDCTWNALRRHHVQAIMEMLSDSGKAPATINTYLAA 83

Query: 140 MRVLFKWAVRQEYVAINPCLSVE-----RPKRKTEGIRPWTKEDMQQFKSFWS-----EG 189
           ++ +   A   + +  +    ++     R  R  +G R   + +++            +G
Sbjct: 84  LKGVALEAWTMKQIDTDSFQHIKQVRSVRGNRLPKG-RALDRYEIKTLFFTCENDFSTKG 142

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG-----FMKL 244
            +       L+  GLR S+     ++H+     +++    G    +            + 
Sbjct: 143 LRDAAIIGVLVGCGLRRSEIISLDLKHVIRREQALRVMGKGNKERLSYMPEGTWERLNRW 202

Query: 245 LAMTPIGKETFFINNDKQ-------KMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATI 296
           +               ++       +++        + +  ++G+ K + H +R+  A+ 
Sbjct: 203 IDEIRGDYAGPLFTRIRRDDDVTDNRLSDQAIYHILETRRIESGLEKFAPHDLRRTFASA 262

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             D G     +    G  ++   + Y +  D  
Sbjct: 263 MLDNGEDIVTVKDAMGHSSITTTQKYDRRGDER 295


>gi|114765612|ref|ZP_01444713.1| Prophage integrase [Pelagibaca bermudensis HTCC2601]
 gi|114542061|gb|EAU45094.1| Prophage integrase [Roseovarius sp. HTCC2601]
          Length = 361

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 55/322 (17%), Positives = 92/322 (28%), Gaps = 22/322 (6%)

Query: 17  RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76
           R G  +YY R                   A    +       +     +    T      
Sbjct: 7   RRGSGVYYIRGTVAGCSIYESTGTRDAARADAIRIRREAELLDRHAYGKAATLTFAEAAL 66

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF 136
            Y K       A           +     +   D          + +       +   Q 
Sbjct: 67  AYMK-------AGGETRFLAKILEHFGPDTLLSDIDNAAIVEAEAALYPEAAASTVNRQL 119

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS-QPRLA 195
           +  +  +   A  +           +R K      R  T E+ +Q     +EG+     A
Sbjct: 120 IVPISAVVTMAADEGLTEP---RRFKRRKGDRVRTRWLTPEEAEQLIEAAAEGAPHILPA 176

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE 253
              +L +GLR S++    + H         I   K G    V LP   + L+   P+   
Sbjct: 177 IGLMLGAGLRSSEALGVDMAHFYPATGEAWIPKTKNGEPRMVRLPSRALDLIRSRPLPDA 236

Query: 254 TFFINNDKQKMNATQ------FSIWFKAKATKAGVNK---SAHGVRKFSATISADAGATA 304
                + K +    +       S  F    T+AG+++   + H +R   AT         
Sbjct: 237 GAICRSPKGRAYVQRENGGGQISTAFANAVTRAGLDRNEVTPHVLRHTWATWYYAQTHDF 296

Query: 305 HELMATYGWKTVDQAETYTKGA 326
             L+   GWK  D A+ Y K A
Sbjct: 297 GGLLDIGGWKKSDMAQRYRKIA 318


>gi|91784092|ref|YP_559298.1| putative phage integrase [Burkholderia xenovorans LB400]
 gi|91688046|gb|ABE31246.1| Putative phage integrase [Burkholderia xenovorans LB400]
          Length = 446

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 51/318 (16%), Positives = 107/318 (33%), Gaps = 30/318 (9%)

Query: 45  PAYMSALTGSTPKREYINSPRKK--PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ- 101
            A      G++P R  +    +     T      +Y   A    LA ++R   +S +++ 
Sbjct: 87  QARREIQQGNSPSRSKVEKRVQANDAFTFGNWAEKYFAEAT---LADSTRSMRKSVYERN 143

Query: 102 IIRKSGDFDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCL 159
           +  +       +IT   + +  E  K     + AI     +  +F++   +     NP  
Sbjct: 144 LASEFDKLKLEEITPARLMARCEKIKARGAAAQAIHAREIVLQVFRFVQARGIKVDNPAA 203

Query: 160 SVERPKRKT--EGIRPWTKEDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGV 214
           S+      T     R    E++  F +   + +     RLA +F+L + +R S+   A  
Sbjct: 204 SIRPSAIATFKARDRALNPEEIHVFFNVLEQVATMSTLRLAVKFMLLTLVRKSEFIDATW 263

Query: 215 QHLQNNIFSIK----TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS 270
             +     +        K G    V L +  +++L             +  +   A+  S
Sbjct: 264 DEVDFEAATWTIPKERMKAGRPHRVYLSEQALEILVAFKTCFGASMYLHPGRYETASPIS 323

Query: 271 IWFKAKATKAGVNK-----------SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
                +   + V             + H +R+ ++T+  +AG     +      +     
Sbjct: 324 AATLNRVIDSTVKLINDRGDEFESFTVHDLRRTASTLLHEAGFNTDWIEKCLAHEQRGVR 383

Query: 320 ETYTKG--ADRIRLGIKN 335
             Y K   AD+ R  ++ 
Sbjct: 384 AIYNKAEYADQRRTMLQA 401


>gi|296165947|ref|ZP_06848413.1| phage integrase family protein [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295898700|gb|EFG78240.1| phage integrase family protein [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 349

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 38/242 (15%), Positives = 71/242 (29%), Gaps = 43/242 (17%)

Query: 125 SRKHTPSSA---IQFLTSMRVLFKWAVRQEYVAINPC----------------------- 158
            R  TP +A    + + ++R LF++ V       NP                        
Sbjct: 87  HRSSTPPAASTVNRRVAAVRALFEYLVMTGVCTDNPVPSPRRGQGLRQSQRGLLGHLGPG 146

Query: 159 ---LSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ 215
                    ++        +  D+  F +  +   + R     +L  GLR +++    + 
Sbjct: 147 RARSGGRLVRQPQRLPESLSTNDVDAFLATLATH-RDRAMVLVMLLGGLRSAEARGLLLA 205

Query: 216 HLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM-----TPIGKETF--FINNDKQ----K 263
            +      ++   K G    V +   F   LA       P G  T   F+          
Sbjct: 206 DVDMGRRRLRVIGKGGKERHVPVDAAFFTELAAYLRWERPPGLATPQCFVVLRGPTTGAP 265

Query: 264 MNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           ++       F+     +G  +   H +R    T  + AG     L A  G  + +    Y
Sbjct: 266 VSEAGLRSLFRRHRETSGATRVRPHRLRHTYGTELSAAGIDLLALRALMGHVSPETTARY 325

Query: 323 TK 324
             
Sbjct: 326 VH 327


>gi|237726547|ref|ZP_04557028.1| tyrosine type site-specific recombinase [Bacteroides sp. D4]
 gi|270295238|ref|ZP_06201439.1| tyrosine type site-specific recombinase [Bacteroides sp. D20]
 gi|282877673|ref|ZP_06286488.1| site-specific recombinase, phage integrase family [Prevotella
           buccalis ATCC 35310]
 gi|294776622|ref|ZP_06742091.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
 gi|229435073|gb|EEO45150.1| tyrosine type site-specific recombinase [Bacteroides dorei
           5_1_36/D4]
 gi|270274485|gb|EFA20346.1| tyrosine type site-specific recombinase [Bacteroides sp. D20]
 gi|281300245|gb|EFA92599.1| site-specific recombinase, phage integrase family [Prevotella
           buccalis ATCC 35310]
 gi|294449537|gb|EFG18068.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
          Length = 411

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 53/293 (18%), Positives = 111/293 (37%), Gaps = 31/293 (10%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQ------IIRKSGDFDYRKITTK---HIRSGVESR 126
            +Y K    G  A  +   +   +        I     D   +++T          + + 
Sbjct: 118 EDYEKQVEAGMKAKGTLEKYRIVYKHLQEFLDIRYHVKDIALKELTPAFISDFEMFLRTD 177

Query: 127 KHTPSSAIQFLTS-MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           KH  ++ +      +R +   A+  E++  +P    E  K +T      TKE+++     
Sbjct: 178 KHCCTNTVWLYVCPLRTMVFIAINNEWLTRDPFREYEIKKEETT-RSFLTKEEIRLLMDG 236

Query: 186 WSEGSQPRLAFEFLLY---SGLRCSDSCRAGVQHLQN-----NIFSIKTQKTGTIITVEL 237
             + ++  L  +  L+   +GL  SD      ++++         +I  QKTG +  + L
Sbjct: 237 KLKNAKQELYRDLYLFCAFTGLSFSDMRNLTEENIRTYFDEHEWININRQKTGVVSNIRL 296

Query: 238 PDGFMKLLAMTPIGKETFFINNDK--QKMNATQFSIWFKAKATKAGVNK--SAHGVRKFS 293
            D     +A   IGK      N K     +        +A A + G+ K  + H  R  +
Sbjct: 297 LD-----IANRIIGKYRGLCENGKIFPVPHYNTCLAGIRAVAKRCGITKHITWHQSRHTA 351

Query: 294 AT-ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345
           AT +    G     + +  G K++   + Y K   + +L  ++ + +++ ++S
Sbjct: 352 ATTVFLSNGVPIETVSSMLGHKSIKTTQIYAK-ITKEKLN-QDMKNLAARLNS 402


>gi|228911789|ref|ZP_04075557.1| Integrase [Bacillus thuringiensis IBL 200]
 gi|228847849|gb|EEM92735.1| Integrase [Bacillus thuringiensis IBL 200]
          Length = 362

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 50/327 (15%), Positives = 100/327 (30%), Gaps = 56/327 (17%)

Query: 67  KPTTLKWLISEYRKSAHWG---SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
            P TL   I+E+ K   W     LAV +     +  D  I    +        +  +  +
Sbjct: 35  SPATLYAYITEFEKFLKWLISNRLAVENGEVVTNICDVPITTLENLPLN--EARTFQRYL 92

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQ-------EYVAINPCLSVERPKRKTEGIRPW-- 174
           +       +  +  ++++ LFK+  +         Y++ N    +E  K K +       
Sbjct: 93  QGEGIETRAINRTFSALKSLFKYLAQNTENEQGENYISRNVMEKIELHKEKVDAAARADD 152

Query: 175 -------TKEDMQ--QFKS-----------------FWSEGSQPRLAFEFLLYSGLRCSD 208
                   K+D+   QF +                 F  +  +       +L +GLR S+
Sbjct: 153 VANMIFNEKDDVAFLQFLANDYGEMLKDISPKKYSYFQRDKERDIAIISLILGTGLRVSE 212

Query: 209 SCRAGVQHLQNNIFSIKTQKTGTI-----ITVELPDGFMKLLAMTPI------GKETFFI 257
                +  +      ++  + G        T    D   + + + P        ++  F+
Sbjct: 213 VASLTISSINFRQGKVRVTRKGNKRSSVLATRSCLDDVQEYIKVRPSKYNCPQDEDLLFV 272

Query: 258 NNDKQKMNATQFSIWFK---AKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWK 314
            N K K          K     ++     +S H +R   AT           L    G  
Sbjct: 273 TNYKGKYTQLTVRAIQKLCDKYSSAFDEKRSPHKLRHTYATNHYKENKDLVLLRDQLGHT 332

Query: 315 TVDQAETYTKGADRIRLGIKNSRRISS 341
           +V+    YT   +  +   +   R+  
Sbjct: 333 SVEVTSIYTNINNEKKR--EAVDRLEK 357


>gi|255616612|ref|XP_002539765.1| conserved hypothetical protein [Ricinus communis]
 gi|223502581|gb|EEF22619.1| conserved hypothetical protein [Ricinus communis]
          Length = 117

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 30/84 (35%), Gaps = 3/84 (3%)

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHEL 307
                 F N   + M    F    K  A  AG+ K  S H +R   AT   + GA    +
Sbjct: 24  RQSAMLFPNRRGEPMTRQAFWYRIKHYALLAGLPKLPSPHTLRHAFATHLLNHGADLRVV 83

Query: 308 MATYGWKTVDQAETYTKGADRIRL 331
               G   +   + YT  A + RL
Sbjct: 84  QLLLGHADLSTTQIYTHVA-QARL 106


>gi|152994591|ref|YP_001339426.1| hypothetical protein Mmwyl1_0555 [Marinomonas sp. MWYL1]
 gi|150835515|gb|ABR69491.1| hypothetical protein Mmwyl1_0555 [Marinomonas sp. MWYL1]
          Length = 371

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 59/382 (15%), Positives = 108/382 (28%), Gaps = 73/382 (19%)

Query: 6   RLPPFVTKERTRHGKIIYYFRKGH--------------GRRIRLPYPHESTF--IPAYMS 49
           + P +V   R  +G+I++  R                    +RL    +S    + AY++
Sbjct: 7   KWPKYV---REVNGRIVWRPRITAEDRTVVDVDSHGFLKPPVRLGSTKDSEARILAAYLA 63

Query: 50  ALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSR---ISFESYFDQIIR-- 104
           A      K            TLKW++ +Y  S+ + +LA  +     S     +  I   
Sbjct: 64  A------KASLTARTGADKHTLKWIVGQYLNSSQFRALASTTHHRTKSLVKVLEHPIAAN 117

Query: 105 ----KSGDFDYRKITTKHIRSGVESRKHTP--------SSAIQFLTSMRVLFKWAVRQ-- 150
                 GD     IT   +R   + R            S+  Q ++ +    +WA+    
Sbjct: 118 GKDITFGDLPILSITKPMVRRLADKRLANMIDDGLKGTSTINQEISLLHSATRWAIEHID 177

Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQ-QFKSFWSEGSQPRLAFEFLLYSGLRCSDS 209
                +    V++ K         T E+   Q+K            FE       R  ++
Sbjct: 178 NLGITDSPFKVKKFKVDENERYV-TDEEYDIQYKIAAELSEYLPFFFELTYLIASRGIET 236

Query: 210 CRAGVQHLQ----NNIFSIKTQKTGTIITVELPDGFMKLLAMTPI---------GKETFF 256
                 H+     N    +  +K      +E  D   K                      
Sbjct: 237 LDLRTSHIDPDPINGGIYVARRKGSKNNFIEWSDRLYKAYQAAVSMLEKHKANGRDVPLI 296

Query: 257 INNDKQKMNATQFSIWF------KAKATKAGVNKSAHGVRKFSATISADAGATAHELMAT 310
           I++   K++ +              +     +  S H        +    G +  E    
Sbjct: 297 ISSTGHKLSMSGLRTAMHRLKEKMEERELTNIFWSLH--------LLKSKGVSDAESDHI 348

Query: 311 YGWKTVDQAETYTKGADRIRLG 332
            G KT      Y    +R +  
Sbjct: 349 AGHKTERMRNKYKTKIERHKAA 370


>gi|268315641|ref|YP_003289360.1| integrase family protein [Rhodothermus marinus DSM 4252]
 gi|262333175|gb|ACY46972.1| integrase family protein [Rhodothermus marinus DSM 4252]
          Length = 409

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 52/292 (17%), Positives = 97/292 (33%), Gaps = 42/292 (14%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----SR 126
           L  L+ E+       +L  +S          ++  +G+    +I    +           
Sbjct: 100 LAPLLEEWLA-VKALTLKPSSLEVLRRMQRHLLDFAGNVSLDRIDRAFLERFQAYLTGEL 158

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            H+P++A +     R  F W   +  +A  P             +   T E+++ F+   
Sbjct: 159 GHSPATANRLAQYARTFFLWLEDRGLIAKAPRQL--ALPEPRREVVFLTPEELRAFQEAD 216

Query: 187 SEGS-----QPRLAFEFLLYSGLRCSDS-CRAGVQ-----HLQNNIFSIKTQKTGTIITV 235
             G      + R  F    ++GLR SD       +      L   ++ ++ +KT     V
Sbjct: 217 LAGLPEGYERARTIFLLACFTGLRASDLKAGMRPEAWDTIDLDAGVWHLRERKTEIYRRV 276

Query: 236 ELPDGFMKLLA-MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---------- 284
            L +   ++L      G  T        K++  + +I+ K  A +AG+            
Sbjct: 277 PLVEPARRILRGRLESGAPTPV-----PKLSEQKANIYVKEIARRAGIEAPVRLGDGREV 331

Query: 285 ------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
                 S H  R+   T+ A A  TA  +        +D  + Y    D  R
Sbjct: 332 PKHQVLSLHAGRRTFVTLVAHAAGTAPLV--GLTHADLDTLQKYLGAWDESR 381


>gi|209917752|ref|YP_002291836.1| phage integrase [Escherichia coli SE11]
 gi|209911011|dbj|BAG76085.1| phage integrase [Escherichia coli SE11]
          Length = 387

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 42/265 (15%), Positives = 95/265 (35%), Gaps = 35/265 (13%)

Query: 112 RKITTKHIRSGVESRKHTP---------SSAIQFLTSMRVLFKWA-VRQEYVAINPCLSV 161
           ++I  + +++ +   K  P          +  + L  ++ + + A    +++   P   +
Sbjct: 116 KEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPV--I 173

Query: 162 ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN- 220
           + P  + + +R   KE+ ++      E  +  + F     +GLR S+      Q +    
Sbjct: 174 KIPAVRNKRVRWLEKEEAKRLIDECPEPLKSVVKFALA--TGLRKSNIINLEWQQIDMQR 231

Query: 221 ---IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK-------------QKM 264
                + +  K+   I V L D   K+L         +   + K             +KM
Sbjct: 232 RVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKM 291

Query: 265 NATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
                + W      +AG+ +   H +R   A+    +G     L    GW++++    Y 
Sbjct: 292 RIDSKTSWLS-ACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYA 350

Query: 324 KGADRIRLGIKNSRRISSVVDSDDP 348
             A       +++R+I  +   + P
Sbjct: 351 HLAPNHL--TEHARKIDDIFGDNVP 373


>gi|297192331|ref|ZP_06909729.1| traSA:integrase fusion protein [Streptomyces pristinaespiralis ATCC
           25486]
 gi|197719686|gb|EDY63594.1| traSA:integrase fusion protein [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 372

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 57/339 (16%), Positives = 104/339 (30%), Gaps = 39/339 (11%)

Query: 18  HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISE 77
           +GK    +R   G+     +         ++  +T S    +Y++ PR      K    E
Sbjct: 9   NGKWRARYRDLDGKE-HARHFDRKIDAQRWIDEVTASLVTGQYVD-PRSAKKPFKEYAEE 66

Query: 78  YRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHT----PSS 132
           +R          ++  +   +    +           I    ++S V S   T     S+
Sbjct: 67  WRAI---QPHRPSTAKAVAQHLRCYVYPAWEKRSLGAIKPGDVQSWVTSLTTTHGLAAST 123

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
           +     ++  +F+ AVR   +  NPC   + P    + I P   E ++          + 
Sbjct: 124 SRTVFNTVNAVFRAAVRDRMIPHNPCAEAKLPSVPRKKIVPLAVEQVRTLSDEIPA--RY 181

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQN-------NIFSIKTQKTGTII----------TV 235
           +        +GLR  +     ++H+              +T K G  +          TV
Sbjct: 182 KGLVLLGAATGLRPGELFGLQLRHVDLLHATVSVEQQIQQTAKHGVYVCPPKTARSHRTV 241

Query: 236 ELP----DGFMKLLAMTPIGKET--FFINNDKQKMNATQF-SIWFKAKATKAGVNK--SA 286
            LP    D     L   P        F       +  T F    ++    KAG+ K    
Sbjct: 242 PLPRMAVDAMKAHLRDFPADGPEGWIFTAPQGGPVVYTHFMDGSWRPACAKAGIPKGTGP 301

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
           H +R   A++    G +   +    G          YT 
Sbjct: 302 HALRHHYASLLIRHGESVKTVSERLGHTNAAMTLNIYTH 340


>gi|221060823|ref|XP_002261981.1| phage integrase like protein [Plasmodium knowlesi strain H]
 gi|193811131|emb|CAQ41859.1| phage integrase like protein, putative [Plasmodium knowlesi strain
           H]
          Length = 472

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 51/294 (17%), Positives = 107/294 (36%), Gaps = 36/294 (12%)

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
           +   LK  I +         ++ N+    + +++ I+ K G ++  ++   +    ++  
Sbjct: 170 EKIKLKKYIEDIYLPLRKEEVSDNTYRVEKGFWNDILPKLGKYELHELGANNWEGFLKYL 229

Query: 127 KHT---PSSAIQFLTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPWTKEDMQQ 181
           K     P +   + ++ +   K+A+ ++Y+    N    ++        I P + ++++ 
Sbjct: 230 KSKNCSPRTMALYQSTYQQSLKYALYRDYLKSVHN-FRKIKNSTIPRRKITPLSPKEIEL 288

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTG-TIITVELP 238
             +    G   R  F   +  GLR S+  R   + +  +     IK QKT  +   + + 
Sbjct: 289 LLTN--SGDMHRAIFALSIGIGLRPSEVLRILWEDINFEKKEIFIKGQKTKYSNTAIPMT 346

Query: 239 ----DGFMKL--LAMTPIGKETFFINNDKQKMNA-------TQFSIWFKAKATKAGVNKS 285
               +  +K   +   P+    F+    K K N          F    K  A +AG+  S
Sbjct: 347 NFAYNELVKWWEIEKKPLKGLCFYSETIKNKFNYTNTKTPLKTFKTALKGAAKRAGLEIS 406

Query: 286 AHG---------VRKFSATISADAG--ATAHELMATYGWKTVDQ-AETYTKGAD 327
             G         +R   ATI+A +          A     +     +TYTK  +
Sbjct: 407 EDGKKRRIFPYLLRHSFATIAATSNPPVPLPVAQAIMRHSSSKMLLDTYTKAGN 460


>gi|95930935|ref|ZP_01313665.1| phage integrase [Desulfuromonas acetoxidans DSM 684]
 gi|95133061|gb|EAT14730.1| phage integrase [Desulfuromonas acetoxidans DSM 684]
          Length = 207

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 25/188 (13%), Positives = 56/188 (29%), Gaps = 11/188 (5%)

Query: 148 VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF--KSFWSEGSQPRLAFEFLLYSGLR 205
           +   ++   P   +ER K   + I     + +++   ++      +          + +R
Sbjct: 1   MDWGWLKFRPAK-IERLKEDNDKIAYLAVDQVKRLVEEARLDRDPRMYPFVMIAAGTAMR 59

Query: 206 CSDSCRAGVQHLQNNIFSIKTQKTGTIIT-VELPDGFMKLLA----MTPIGKETFFINND 260
             +      +H+      I   K    +    +       L       P      F  + 
Sbjct: 60  KMEVLSIRKEHIDFERLLILVPKAKAGMREQPITKQLAAFLRWYVNTLPDNTPWLFPFST 119

Query: 261 KQKMNATQFSIWFKAKATKAGVNKSA---HGVRKFSATISADAGATAHELMATYGWKTVD 317
            +  ++ +    F+     AG++      H +R  + T    AG     +    G KT+ 
Sbjct: 120 SRTGHSVEVRNSFRRVVAAAGLDPDVIVRHTLRHTAITHLVQAGVDLPTVKRISGHKTLI 179

Query: 318 QAETYTKG 325
             E Y   
Sbjct: 180 MVERYAHQ 187


>gi|242373385|ref|ZP_04818959.1| bacteriophage integrase [Staphylococcus epidermidis M23864:W1]
 gi|242348748|gb|EES40350.1| bacteriophage integrase [Staphylococcus epidermidis M23864:W1]
          Length = 348

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 47/270 (17%), Positives = 93/270 (34%), Gaps = 22/270 (8%)

Query: 86  SLAVNSRISFESYFDQIIRKSG-DFDYRKITTKHIRSGVESRKHTPSS--AIQFLTSMRV 142
            L++  +  +E   D  +   G D   + IT    +  + +  +  +S    +    +  
Sbjct: 80  KLSIKQQYWYEHSLDLFLDHFGEDIMIKHITRNEYQKFLTNFANGRTSETVRKVNLFLSN 139

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKT---EGIRPWTKEDMQQFKSFWSEGS-QPRLAFEF 198
             K AV   Y+  +P  +V+    K+   E ++  T E  +  + ++   S +  +    
Sbjct: 140 CLKDAVYDGYLTKDPTYNVKAKGTKSAKKEDVKFLTIEQYEGLREYFKLKSDKSSIMLFI 199

Query: 199 LLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKT---GTIITVELPDGF--MKLLAMTPIG 251
           LL +G R S+  R     L  Q+N   +   KT     I+ V   D       L   P  
Sbjct: 200 LLITGGRFSEVNRMTYDDLIYQDNAIHLPGTKTVTSDRIVEVSKSDLLYIKSALLHHPRR 259

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMA 309
           ++    N     ++    S  F+    K  ++   + + +R   A+     G     +  
Sbjct: 260 RDNIIFN-----LSHNAISKVFRKAKGKFEIDNEVTPYSLRHTHASYLLSKGIPIEYISK 314

Query: 310 TYGWKTVDQA-ETYTKGADRIRLGIKNSRR 338
             G   +    + YT   D  +       R
Sbjct: 315 RLGHSNIGITLDVYTHLLDEHKKEQGARVR 344


>gi|253774476|ref|YP_003037307.1| integrase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254160604|ref|YP_003043712.1| putative integrase [Escherichia coli B str. REL606]
 gi|297516723|ref|ZP_06935109.1| predicted integrase [Escherichia coli OP50]
 gi|242376315|emb|CAQ31008.1| DLP12 prophage; predicted integrase [Escherichia coli BL21(DE3)]
 gi|253325520|gb|ACT30122.1| integrase family protein [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|253972505|gb|ACT38176.1| predicted integrase [Escherichia coli B str. REL606]
 gi|253976715|gb|ACT42385.1| predicted integrase [Escherichia coli BL21(DE3)]
          Length = 387

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 42/265 (15%), Positives = 95/265 (35%), Gaps = 35/265 (13%)

Query: 112 RKITTKHIRSGVESRKHTP---------SSAIQFLTSMRVLFKWA-VRQEYVAINPCLSV 161
           ++I  + +++ +   K  P          +  + L  ++ + + A    +++   P   +
Sbjct: 116 KEIWKQKVQAAIRKGKELPVYEPKPVPTQTKAKHLAMIKAILRAAERDWKWLEKAPV--I 173

Query: 162 ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN- 220
           + P  + + +R   KE+ ++      E  +  + F     +GLR S+      Q +    
Sbjct: 174 KIPAVRNKRVRWLEKEEAKRLIDECPEPLKSVVKFALA--TGLRKSNIINLEWQQIDMQR 231

Query: 221 ---IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK-------------QKM 264
                + +  K+   I V L D   K+L         +   + K             +KM
Sbjct: 232 RVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKM 291

Query: 265 NATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
                + W      +AG+ +   H +R   A+    +G     L    GW++++    Y 
Sbjct: 292 RIDSKTSWLS-ACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYA 350

Query: 324 KGADRIRLGIKNSRRISSVVDSDDP 348
             A       +++R+I  +   + P
Sbjct: 351 HLAPNHL--TEHARKIDDIFGDNVP 373


>gi|146311306|ref|YP_001176380.1| phage integrase family protein [Enterobacter sp. 638]
 gi|145318182|gb|ABP60329.1| phage integrase family protein [Enterobacter sp. 638]
          Length = 311

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 50/288 (17%), Positives = 97/288 (33%), Gaps = 41/288 (14%)

Query: 69  TTLKWLISEYRKSAHWG----SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
            T+   I +Y            L  NS               G    + I+T  I    +
Sbjct: 15  HTVTEWIDKYISIQEERVKNNELRPNSFFQKNKPLRLFREHCGMQHLKDISTLDIAEITD 74

Query: 125 SRKHTPSSAIQFLTSMRVL----FKWAVRQEYVAI--NPCLSVERPKRKTEGIRPWTKED 178
           + K       +    +R++    FK A    +V    NP ++ ++P+ +    R  + E+
Sbjct: 75  AIKAEGH--NRMAQVVRMVLIDVFKEAQYSGHVPPGYNPAMATKQPRNRVTRQR-LSYEE 131

Query: 179 MQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
             +     +E  QP L       L +G R  D C+     + +++  I+ +KTG+ + + 
Sbjct: 132 WCKIYE-AAENQQPYLQTGMLLALVTGQRLGDICKMKFSDIWDDMLHIEQEKTGSRLAIP 190

Query: 237 LP---DGFMKLLAMTPIGKETFFIN-------------NDKQKMNATQFSIWFKAKATKA 280
           L    D     L           ++                  ++++  +  FK    K 
Sbjct: 191 LKLRCDILNLTLRDVISKCRDAVVSKYLVHFRHSSSQATRGDGVSSSSLTTTFKKARNKC 250

Query: 281 GVNK------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           G++       + H  R  S  +  + G    +L    G K+  Q + Y
Sbjct: 251 GIDWEKGTAPTFHEQRSLSERLYREQGIDTQKL---LGHKSRKQTDKY 295


>gi|315641378|ref|ZP_07896453.1| tyrosine recombinase XerC [Enterococcus italicus DSM 15952]
 gi|315482871|gb|EFU73392.1| tyrosine recombinase XerC [Enterococcus italicus DSM 15952]
          Length = 316

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 43/283 (15%), Positives = 92/283 (32%), Gaps = 42/283 (14%)

Query: 78  YRKSAHWGSL------AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE--SRKHT 129
           Y   A W  L         +   ++     +     D   + +  K  +S +   +  H 
Sbjct: 20  YEYYAEWIELYKVGAVRDVTLAKYKMSLKWVRELVPDLFLQDLDRKSYQSLLNQYAMTHE 79

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV----ERPKRKTEGIRPWTKEDMQQFKSF 185
             + + F   ++   + A+ +  +  +P   V    + P+ K +      + D+Q+    
Sbjct: 80  KQTTLDFHHQLKGALRDALDERIIISDPTRKVVIKGKTPRPKKDKY--LNQFDLQKLLDS 137

Query: 186 WSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQ--NNIFSIKT--------------- 226
                Q    +  LL   +GLR S++     +     N   S+                 
Sbjct: 138 LELTEQVSFDWLILLIAKTGLRFSEALALTPEDFNFFNQTISVTKTWNYKTNEGGFMGTK 197

Query: 227 ---QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
               K    I  +    F +L+   P   E  F+   K+++  +  +   +    K G+ 
Sbjct: 198 NASSKRHVSIDWKTGMQFAQLIKDLP-DNEPIFV---KERVFNSTVNNLLRRCCKKTGIP 253

Query: 284 K-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
             + HG+R   A++   AG +   +    G   +    + Y  
Sbjct: 254 IITVHGLRHTHASLLLFAGVSIASVARRLGHANMTTTQQIYLH 296


>gi|257463481|ref|ZP_05627875.1| integrase/recombinase [Fusobacterium sp. D12]
 gi|317061040|ref|ZP_07925525.1| integrase/recombinase [Fusobacterium sp. D12]
 gi|313686716|gb|EFS23551.1| integrase/recombinase [Fusobacterium sp. D12]
          Length = 333

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 51/304 (16%), Positives = 96/304 (31%), Gaps = 47/304 (15%)

Query: 59  EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS--GDFDYRKITT 116
           + I  PR+K  T      E RKS      +  +   +  Y    +     G+  +++   
Sbjct: 9   QEIILPRRKKRT-----QEGRKSFFEIYKSPKTLQDYLFYLKDFLSFVYEGEASFQQDEI 63

Query: 117 KHIRSGVES-------------RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163
             +  GVE              RK   SS  + +++M+ L+K    + Y   NP   V+ 
Sbjct: 64  LPLMKGVEREDVEQYISHLLQERKMKKSSVNKVISAMKSLYKEL--EAYQVENPFRYVKL 121

Query: 164 PKRKTEGIRPWTKED------MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217
            K                   +++F+    +  +  +    L Y+G+R  +      +HL
Sbjct: 122 FKTARNLDNILKISSNDIKHIIERFQIKSEKDYRNLMILYTLYYTGVRSDELLHMEFRHL 181

Query: 218 QNN----IFSIKTQKTGTIITVELPDGFMKLLAMTPI-------------GKETFFINND 260
            N        ++  K+G      +    M+ L                       F ++ 
Sbjct: 182 LNREGSYFLKLEKTKSGKEQYKPIHPALMEELQEYKKEMKALHRLEEEDLQNHFIFCSHF 241

Query: 261 --KQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
              + ++        K+       + S H +R   AT  +  GA   E+    G      
Sbjct: 242 EKNKALSYRALYDLIKSLGLSIEKDMSPHNIRHAIATELSLNGADLVEIRDFLGHADTKV 301

Query: 319 AETY 322
            E Y
Sbjct: 302 TEVY 305


>gi|193067157|ref|ZP_03048126.1| site-specific recombinase, phage integrase family [Escherichia coli
           E110019]
 gi|192959747|gb|EDV90181.1| site-specific recombinase, phage integrase family [Escherichia coli
           E110019]
          Length = 415

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 57/367 (15%), Positives = 122/367 (33%), Gaps = 38/367 (10%)

Query: 16  TRH---GKIIYYF--RKGHGRRI---RLPYPHESTFI-----------PAYMSALTGSTP 56
            RH   G + +YF  R G GR++   RL   +                 A+++       
Sbjct: 41  VRHSTSGLLTWYFTYRAGAGRQVSPERLKLGNYPDLSLKAAREKAAQCRAWLAEGKNPRH 100

Query: 57  KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT 116
           +  Y      KP T+   IS Y    H     V+         + +I+  G+    K   
Sbjct: 101 ELNYSIQEALKPVTVGDAIS-YWLEMHVKENRVDYVCLKSRLNNHVIQHIGNMPLDKCEL 159

Query: 117 KHIRSGVES-RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS---VERPKRKTEGIR 172
           +H  +  +  RK +P ++   + + +   K+  ++ Y   N       V+  K+     R
Sbjct: 160 RHWLACFDRIRKKSPVTSGHMMQACKQALKFCRKRRYAVSNVLDDLNVVDVGKKPGISER 219

Query: 173 PWTKEDM-QQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT--- 226
             + +++ +  ++   +   P        L+  G R  +   + ++              
Sbjct: 220 VLSNKELGELLQALDKKIFPPYYSALIRLLIVFGCRTGELRLSEIREWDFKEMLWTVPKE 279

Query: 227 -QKTGTIITVELPDGFMKLLAMTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGVN 283
             KT   I   +P+  +  +             +   KQ+ + +Q+  +   K      +
Sbjct: 280 HSKTKVAIFRPIPESILPFVTQLVEQNRHTGLLLGELKQEASVSQYGRFMHKKLNH--PH 337

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY--TKGADRIRLGIKN-SRRIS 340
            S H +R+   T+  D G   H +      +       Y  ++  D  R  +   + R+ 
Sbjct: 338 WSLHDIRRTFTTMLNDLGVDPHIVEQLTAHQMPGMQRVYNHSRYLDAKRNALDMWTERLE 397

Query: 341 SVVDSDD 347
            +  +  
Sbjct: 398 ILAGTHK 404


>gi|116492801|ref|YP_804536.1| integrase [Pediococcus pentosaceus ATCC 25745]
 gi|116102951|gb|ABJ68094.1| Integrase [Pediococcus pentosaceus ATCC 25745]
          Length = 357

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 32/288 (11%), Positives = 93/288 (32%), Gaps = 22/288 (7%)

Query: 55  TPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI 114
              +    S      T       + ++     +  ++  ++ S    I           +
Sbjct: 44  EADKLQNRSIIASSMTFADYFKMWMETYKKNDIRPSTYNTYISTLRHIKESFDGITLENL 103

Query: 115 TTKHIRSGVESRKHTPSSAIQFL--TSMRVLFKWAVRQEYVAINPCLSVERPKRK-TEGI 171
           T   ++S +++   T S     L  + ++   K A+  +Y+  +    ++    + ++  
Sbjct: 104 TYSLLQSRLDTIGKTLSKGTMTLIVSRIKACLKDALYDKYILDDIFTRLKPHGIERSKKT 163

Query: 172 RPWTKEDMQQFKSF--WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQ 227
              +  + ++ + +   S+  +  LA    L +G+R  +      + +    N   +   
Sbjct: 164 NALSVTEFEKLQDYLYHSKLDKASLAILVALETGMRIGEVLALQYKDVSIPFNNIHVNKS 223

Query: 228 KTGTII----------TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKA 277
           ++G I+           +++ +    +++        F  N  +Q     +         
Sbjct: 224 RSGNIVGKPKNKNSVRDIKITNELANIISNEKNNSTEFIFNCRRQ-TVRNRLDSLISKLD 282

Query: 278 TKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET-YTK 324
            +     + HG+R   A+     G + + + A  G       +  Y  
Sbjct: 283 LQ---PITIHGLRHSHASYLLYKGVSINYVSARLGHANTSITQKVYAH 327


>gi|325520794|gb|EGC99805.1| site-specific tyrosine recombinase XerD [Burkholderia sp. TJI49]
          Length = 239

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 28/220 (12%), Positives = 64/220 (29%), Gaps = 22/220 (10%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFES---YFDQIIRKSGDFDYRKITTKHIRSG 122
               ++               LA N+  ++      F + +  + D          +   
Sbjct: 23  ASRASIDAFCDALWLE---HGLARNTLDAYRRDLVLFSRWLAATHDAPLDLADETMVTGY 79

Query: 123 VESRKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
           + +R     +S+ + L+  R  + WAVR+   + +P L +   K+        ++  ++ 
Sbjct: 80  IAARSDGKATSSNRRLSVFRRYYGWAVREHRASADPTLRITSAKQAARFPSTLSEAQVEA 139

Query: 182 FKS----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-- 235
                      G + R   E +  SGLR S+        +  N   ++    G+   +  
Sbjct: 140 LLGAPDIATPLGLRDRTMLELMYASGLRVSELVTLKTVEVGLNEGVVRVMGKGSKERLVP 199

Query: 236 -------ELPDGFMKLLAMT--PIGKETFFINNDKQKMNA 266
                   +                 +  F+      M  
Sbjct: 200 FGEVAHGWIERYLRDARPALLGARAADALFVTARGDGMTR 239


>gi|240146114|ref|ZP_04744715.1| site-specific recombinase, phage integrase family [Roseburia
           intestinalis L1-82]
 gi|257201767|gb|EEV00052.1| site-specific recombinase, phage integrase family [Roseburia
           intestinalis L1-82]
          Length = 269

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/251 (13%), Positives = 79/251 (31%), Gaps = 22/251 (8%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFK 145
           +L+ N+  S+    +             +     +  +      P +    + ++    +
Sbjct: 15  NLSDNTITSYLWTANYFTENYDSVSKDNLLA--YKGYLMEF-FKPKTVNLRIQAINKYLE 71

Query: 146 WAVRQEYVAINPCLSVERPKRKTEGI--RPWTKEDMQQFKSFWSEGSQPRLAFEF--LLY 201
           +   Q+         ++  K + +       +  D    K    +       F    L  
Sbjct: 72  YLEEQQL-------QLKTVKVQQKNFLENVISNADYNFLKKQLKKDENIEWYFVVWYLAA 124

Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM----KLLAMTPIGKETFFI 257
           +G R S+  +  ++H++   F + T K G +  + +P        + L  T       F+
Sbjct: 125 TGARVSELIQIKIEHIEIGYFDLYT-KGGKLRRLYIPKKLKKETLEWLEKTHRSSGYLFL 183

Query: 258 NNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGATAHELMATYGWK 314
           N    ++     S   K  A K G++K     H  R   A    +       L    G +
Sbjct: 184 NRYGDRITTRGISQQLKNYAEKYGLDKKVVYPHSFRHRYAKNFLEKYNDIALLADLMGHE 243

Query: 315 TVDQAETYTKG 325
           +++    Y + 
Sbjct: 244 SIETTRIYLRR 254


>gi|53713278|ref|YP_099270.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|52216143|dbj|BAD48736.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
          Length = 409

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 46/304 (15%), Positives = 102/304 (33%), Gaps = 36/304 (11%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESY---FDQIIR------KSGDFDYRKITTKHIR 120
           TL     +Y K          +  S++ Y   F+ + R         D  ++ +    I 
Sbjct: 110 TLIGYCDKYDKMLAARIGVNMTLESYKRYGISFNHVKRFLRAKYNLSDISFQALDYSFIE 169

Query: 121 SG----VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
           +         K  P++ I  +  ++++ K A     +  NP +     + +    +  T 
Sbjct: 170 AFDFYLRVQLKFKPNTIIGIVGHLKIIVKRAANDGIITRNPFIGF-SLEGEPLQPKSITG 228

Query: 177 EDMQQFKSFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL---QNN--IFSIKTQK 228
           +++ +  +           R  F F +++G+  SD       +L   ++       K +K
Sbjct: 229 QELNKIMTTPLDSPNRYLVRDMFLFSVFTGIAFSDIRNLTCNNLVQAEDGVWWIHSKRRK 288

Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW---FKAKATKAGVNK- 284
           TGT   V L +  ++++           +N D +       S      K  A   G+ + 
Sbjct: 289 TGTEFHVPLLELPLQIIEKYRG------LNKDGKMFVMLSCSKTNGNLKKIAKICGIKRN 342

Query: 285 -SAHGVRKFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
            + H  R   A++     G     +    G + +     Y + ++       + RR+   
Sbjct: 343 ITFHMARHSYASLITLSQGVPMETVSRMLGHRDLRATRIYAQVSNEK--INTDMRRLEKR 400

Query: 343 VDSD 346
           +   
Sbjct: 401 ITDR 404


>gi|331662755|ref|ZP_08363678.1| integrase [Escherichia coli TA143]
 gi|331061177|gb|EGI33141.1| integrase [Escherichia coli TA143]
          Length = 411

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 44/314 (14%), Positives = 85/314 (27%), Gaps = 65/314 (20%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQII------RKSGDFDYRKITTKHIRSGV 123
           T   L   + K      L  N+    +S    +              Y  I         
Sbjct: 82  TFGELCDIWTKIKE-TELTTNTMKKTKSQLKTLRIIICESTLISHIRYSDILNYRNELLH 140

Query: 124 -----------ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
                        +  T  +   ++  +  L ++A +  ++   P   V++ +R      
Sbjct: 141 GETLYLDNPRSNKKGRTVRTVDNYIALLCSLLRFAYQSGFILTKPFEGVKKLQRNRIKPD 200

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
           P +K +         +G    L  +F +YSGLR  +      + +      +  ++  TI
Sbjct: 201 PLSKTEFNALMES-EKGQSQNLW-KFAVYSGLRHGELAALAWEDVDLEKGIVNVRRNLTI 258

Query: 233 ITVELPDG----------FMKLLAMTP-----IGKE-----TFFINNDKQK--------- 263
           + +  P                L          G       TF+     +          
Sbjct: 259 LDMFGPPKTNAGIRTVTLLQPALEALKEQYKLTGHHRKSEITFYHREYGRTEKQKLHFVF 318

Query: 264 ------------MNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMA 309
                        + +     + A   +AG+ +    H  R   A     AGA    + +
Sbjct: 319 MPRVCNGKQKPYYSVSSLGARWNAAVKRAGIRRRNPYHT-RHTFACWLLTAGANPAFIAS 377

Query: 310 TYGWKTVDQA-ETY 322
             G +T     E Y
Sbjct: 378 QMGHETAQMVYEIY 391


>gi|281178375|dbj|BAI54705.1| phage integrase [Escherichia coli SE15]
          Length = 314

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/268 (13%), Positives = 84/268 (31%), Gaps = 31/268 (11%)

Query: 86  SLAVNSRISFESYFDQII------RKSGDFDYRKIT---TKHIRSGVESRKHTPSSAIQF 136
            LA + R    S  ++          + D+ + ++       +R+ +    +  SS    
Sbjct: 29  GLAPSGRRGITSLLNRSASILKHGADAADYPWEQLNYAAVAKVRAALLDDGYAVSSVNMA 88

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKT----EGIRPWTKEDMQQFKSFWSEG--- 189
           L+++R + + A    Y+       +   KR +       R   +++++       +    
Sbjct: 89  LSALRGVAQTAFNLNYMDAETLARIRSVKRVSGDVQRKGRALGRQEIRVLIQAAKQHPQS 148

Query: 190 ---SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
               +       L  +GLR  +  +   +   N I +++  K      + + D   K + 
Sbjct: 149 VRRCRDVAIVLMLCGTGLRAGELVKLERRDYDNGILTVRQGKGRKYREIHVADAVDKAIR 208

Query: 247 M-----TPIGKETFFINNDK------QKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSA 294
                         F    +      Q +  T  +         AG+ + + H +R+   
Sbjct: 209 AWLKVGADEADSALFRRIQRSGKVASQPLTTTGLTGILAELQQTAGIARFTPHDMRRTFI 268

Query: 295 TISADAGATAHELMATYGWKTVDQAETY 322
           T   + G   + +    G   +     Y
Sbjct: 269 TRLLEQGVDINTVRQLAGHSDISTTTRY 296


>gi|288930817|ref|YP_003434877.1| integrase [Ferroglobus placidus DSM 10642]
 gi|288893065|gb|ADC64602.1| integrase family protein [Ferroglobus placidus DSM 10642]
          Length = 403

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 47/264 (17%), Positives = 92/264 (34%), Gaps = 25/264 (9%)

Query: 93  ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVR 149
             +     ++    G  D+  I    ++  +     +P    +   +  S++  FKW  +
Sbjct: 58  QKYAFILRKVAEWLG-KDFDNIIEDDLKRVIAIINTSPFTEWTKHDYRRSIKKFFKWLGK 116

Query: 150 QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDS 209
           +E V+   C     PK +       T++D+++     ++ S+ R     L  SG R  + 
Sbjct: 117 EELVSWIKCRG---PKNRKLPEEILTEDDIKKMIDV-AQNSRDRAIISVLYESGCRAGEF 172

Query: 210 CRAGVQHL---QNNIFSIKTQKTGTI--ITVELPDGFMKLLAMTP----IGKETFFINND 260
               ++++   +     I   KTG      V       + + M P         +     
Sbjct: 173 LSMRMKNVSFDRYGAVIIVHGKTGYRRIRLVSSSPYLAEWINMHPFRENPEAWLWISTKT 232

Query: 261 KQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGW-KTVD 317
            +++         +  A KAG+ K    H  R   AT  A    T  ++   +GW +  D
Sbjct: 233 FRRIPYNTLRAILRNIAIKAGIRKKVNPHAFRHARATHLAKF-LTEAQMKEFFGWVQDSD 291

Query: 318 QAETYT----KGADRIRLGIKNSR 337
            A  Y     +  DR  L +   +
Sbjct: 292 MASVYVHLSGRDVDRAILQLYGMQ 315


>gi|255505350|ref|ZP_05345621.3| putative phage integrase/recombinase [Bryantella formatexigens DSM
           14469]
 gi|255268514|gb|EET61719.1| putative phage integrase/recombinase [Bryantella formatexigens DSM
           14469]
          Length = 306

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 40/258 (15%), Positives = 88/258 (34%), Gaps = 20/258 (7%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGD-FDYRKITTKHIRSGVESRKHTPSSAIQF 136
           + +S      +  +   +          +G      K      +  +  R +  +S    
Sbjct: 39  FEQSMRRDEKSDATVRKYLHDLLAFREYTGGGCPVTKEVVIAYKQYLMGR-YAVASVNSM 97

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP----WTKEDMQQFK-SFWSEGS- 190
           L ++   FK      +        V+  K + +  R      T+E+  +   + W +G+ 
Sbjct: 98  LAALNCFFK---EYGWYD----CVVKSLKVQRKSFRRSDRELTREEYYRLISTAWEKGNV 150

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE--LPDGFMKLLAMT 248
           +  L  + +  +G+R S+     V+ L++   ++  +    ++ +   L     K +   
Sbjct: 151 RLSLIMQTICSTGIRVSELEFITVEALRSRRATVSLKGKTRVVLLPAELCRILRKYVKEH 210

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGATAH 305
            I +   F++   + ++ +      KA    AGVN      H +R   A    D      
Sbjct: 211 NISEGCIFVSRSGKPLDRSNIFHDMKALCETAGVNPEKVFPHNLRHLFAITYYDVEKDIS 270

Query: 306 ELMATYGWKTVDQAETYT 323
            L    G  ++D    YT
Sbjct: 271 HLADILGHASIDTTRIYT 288


>gi|169833903|ref|YP_001693494.1| integrase [Streptococcus pneumoniae Hungary19A-6]
 gi|168996405|gb|ACA37017.1| integrase [Streptococcus pneumoniae Hungary19A-6]
          Length = 380

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 52/361 (14%), Positives = 116/361 (32%), Gaps = 52/361 (14%)

Query: 18  HGKIIYYFRKGHGRRIRLPYPH------ESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
           +GK  Y+ R       +L                     L     ++           T 
Sbjct: 8   NGKFKYFERYKDPYTEKLKKVSVTMEKKTPQARNQAAILLQEKIKQKLGEKQHSVSNITF 67

Query: 72  KWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHIRSGVESRKHT 129
           + L  E+ +  +W   +  ++  + ++   +I+++  GD+  R I  + ++  ++     
Sbjct: 68  EKLYEEFEE--NWKHGVKNSTVYASKNVKKEILKQIEGDYLVRNIDRRLLQKVIDQLLQD 125

Query: 130 PSSAIQFLTS---MRVLFKWAVRQEYVAINPCLSVERPKR-------KTEGIRPWTKEDM 179
             S          +  + K+A+R  Y+  N  L VE P++       + +  +   +++ 
Sbjct: 126 GRSHNYVSKIKFKLNQIMKFAIRMNYIDTNEMLFVETPRKVITSDELRKKNTKYLDQKEF 185

Query: 180 QQF------KSFWSEGSQPRLAFEFLLY-SGLRCSDSCRAGVQ---HLQNNIFSIK---- 225
           + F      ++         +    +L+ +G+R  +      +           IK    
Sbjct: 186 KLFIQNLKDEALCDYRITKYIRIAKVLFLTGMRYGELAALNYKEDIDFSKKTIHIKHTYD 245

Query: 226 -------TQKT-GTIITVELPDGFMKLLAMTPIGKET-------FFINNDKQKMNATQFS 270
                  T KT  +   +  P   + ++    I   T        FIN   + +   +  
Sbjct: 246 FRQKERTTPKTIKSDRVITAPQKVLDIIKEQIIENATNGFDTDFIFINTLGEPITNARVI 305

Query: 271 IWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGAD 327
              K    K G+ K  + H  R    ++ A+ G     +M   G        E Y+    
Sbjct: 306 CALKRHGQKIGIEKNITTHTFRHSHISLLAELGIPLTAIMDRVGHSDSKTTLEIYSHVTQ 365

Query: 328 R 328
           +
Sbjct: 366 K 366


>gi|167560999|ref|ZP_02353915.1| Integrase or site-specific recombinase [Burkholderia oklahomensis
           EO147]
          Length = 418

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 38/347 (10%), Positives = 102/347 (29%), Gaps = 34/347 (9%)

Query: 10  FVTKERTRHGKIIYYFR------------KGHGRRIRLPYPHESTFIPAYMSALTGSTPK 57
            +  E    G   + +R             G    + L           Y   +      
Sbjct: 39  GLVLEVMASGSKFWRYRYSLHGKQQPVVTIGEYPAVSL--TMARERARRYAEIVASGVSP 96

Query: 58  REYINSPRKKPTTLKWLIS--EYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKI 114
                  R    +L  +     Y         +     + +   ++ +    G      +
Sbjct: 97  VADARKDRGAVKSLDTVREFGGYWIEQQMAGKSEEYLRTTKRALEKDVYPAIGGKSVSDV 156

Query: 115 TTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV--ERPKRKTEG 170
           T   + +  +  K    P  A+     ++ ++++A+ ++ V  NP  ++       +   
Sbjct: 157 TPGDVLAICDRIKKRGAPKMALSTRNVLKRMYEYAIARQLVTANPAQAIVARFVATQDSR 216

Query: 171 IRPWTKEDMQQ-FKSFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-- 225
            R  + +++    ++ ++ G +   +LA   L+ + +R S+   A       +    +  
Sbjct: 217 DRVLSPDEIGHVLRAVYASGIRRPLKLAVHLLVLTMVRKSELIEARWDEFDLDASIWRIP 276

Query: 226 --TQKTGTIITVELPDGFMKLLAMTP---IGKETFFINNDK--QKMNATQFSIWFKAKAT 278
               K      V L    + +L       I     F ++    + +  +  +   +A   
Sbjct: 277 AERMKKDREHWVYLAPQAVAMLRELHDSRISHRYVFPSSRGADRPIAKSTLNQAVRALDM 336

Query: 279 KAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           +   +   H  R+ ++T   + G  +  +              Y + 
Sbjct: 337 EVQ-HFVLHDFRRTASTHLHEMGQPSDAIEKALAHSIKGIKGVYNRA 382


>gi|56478586|ref|YP_160175.1| integrase [Aromatoleum aromaticum EbN1]
 gi|56314629|emb|CAI09274.1| Integrase [Aromatoleum aromaticum EbN1]
          Length = 402

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 59/334 (17%), Positives = 108/334 (32%), Gaps = 32/334 (9%)

Query: 10  FVTKERTRHGKIIYYFR-----------KGHGRRIRLPYPHESTFIPAYMSALTGSTPKR 58
            +  E T  G  ++ +R            G   R+ L          A      G  P  
Sbjct: 25  GLYLEVTPAGGKLWRYRFRLAGKENVFAIGAYPRVSLADAR-KARDEARDLVKQGFNPSH 83

Query: 59  EYINSPRKKP----TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRK 113
               + +        T   +  E+ +S    S +   R    +  D+ I+ + G    R 
Sbjct: 84  YRQQAKQAVIDENLNTFAPVADEWYQS-KVDSWSKGHRHHVRTILDKDILPRIGKLPIRS 142

Query: 114 ITTKHIRSGVESRKHTPSSAIQFL--TSMRVLFKWAVRQEYVAINPCLSVERPKRK--TE 169
           IT+  +   ++      ++    L    M  +F  A+       NP   ++R   +  TE
Sbjct: 143 ITSPLLHDVMKKIVARGATTRAILARQIMGSVFNLAILTHRADTNPAEPLKRQIARCVTE 202

Query: 170 GIRPWTKEDMQQFKSFWSE---GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK- 225
             R   + D+  F    S+    +  R+A + L+ + +R  + C A       +  +   
Sbjct: 203 HHRHLEERDVGDFLRKLSDYTGHATTRIALQLLMLTAVRPGEVCGARWAEFDIDGQNWTI 262

Query: 226 ---TQKTGTIITVELPDGFMKLLAMT-PIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281
                KT     V L +  + LL    PI  +T F+   +     T  +   +    K G
Sbjct: 263 PKERMKTRKPHIVPLSNQAVDLLKELEPITGDTAFLFPSQGTKTQTMPTQSIRNAVVKLG 322

Query: 282 V--NKSAHGVRKFSATISADAGATAHELMATYGW 313
                S HG R   +T+    G  +  +      
Sbjct: 323 YADKFSPHGARGTFSTMLNGRGYNSDWIERQLAH 356


>gi|293415643|ref|ZP_06658286.1| type 1 fimbriae regulatory protein [Escherichia coli B185]
 gi|291433291|gb|EFF06270.1| type 1 fimbriae regulatory protein [Escherichia coli B185]
          Length = 209

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 23/151 (15%), Positives = 44/151 (29%), Gaps = 15/151 (9%)

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAM 247
           S+         + GLR S+     +  L+       I+  K G      L    +  +  
Sbjct: 26  SRDVCMILLAYFHGLRVSELLSLQLSDLELTTEKIYIQRIKNGFSTVHPLQKEEVIAITN 85

Query: 248 TPIGKETF-----------FINNDKQKMNATQFSIWFKAKATKAG--VNKSAHGVRKFSA 294
               + +            F++   + ++  +F     A    AG  +    H +R    
Sbjct: 86  WLNERNSLNVKHFNDNPWLFVSRTGKPLSRQRFYNIVSAAGKNAGLNIKVHPHMLRHACG 145

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKG 325
              AD G     +    G + +     YT  
Sbjct: 146 YSLADNGVDTRLIQDYLGHRNIRHTVIYTAS 176


>gi|254712191|ref|ZP_05174002.1| hypothetical protein BcetM6_02187 [Brucella ceti M644/93/1]
 gi|254715261|ref|ZP_05177072.1| hypothetical protein BcetM_02197 [Brucella ceti M13/05/1]
 gi|256015144|ref|YP_003105153.1| site-specific recombinase, phage integrase family [Brucella microti
           CCM 4915]
 gi|260167122|ref|ZP_05753933.1| site-specific recombinase, phage integrase family protein [Brucella
           sp. F5/99]
 gi|261216987|ref|ZP_05931268.1| phage integrase [Brucella ceti M13/05/1]
 gi|261319857|ref|ZP_05959054.1| phage integrase [Brucella ceti M644/93/1]
 gi|261756522|ref|ZP_06000231.1| site-specific recombinase [Brucella sp. F5/99]
 gi|255997804|gb|ACU49491.1| site-specific recombinase, phage integrase family [Brucella microti
           CCM 4915]
 gi|260922076|gb|EEX88644.1| phage integrase [Brucella ceti M13/05/1]
 gi|261292547|gb|EEX96043.1| phage integrase [Brucella ceti M644/93/1]
 gi|261736506|gb|EEY24502.1| site-specific recombinase [Brucella sp. F5/99]
          Length = 402

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 48/312 (15%), Positives = 110/312 (35%), Gaps = 28/312 (8%)

Query: 49  SALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSG 107
           +A      ++    +  K   T      ++ +      ++  +R      +++ +  K G
Sbjct: 77  AAGKSPAKEKARDKARVKDAETFGAWAEKWLRGYQ---MSETTRNMRRGTYERDLKPKFG 133

Query: 108 DFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165
           +    +IT + +R+  ++   +  PS+A+     M ++F+WA+ +     NP   V    
Sbjct: 134 NRKLIEITHEDLRALTDAIVEQGRPSTAVVCREIMMLVFRWAIERGQKVENPADLVRPST 193

Query: 166 RKT--EGIRPWTKEDMQQFKSFWS-EGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQ-- 218
                   R  T E++     +    G+ P  R A + LL + +R S+   A    +   
Sbjct: 194 IAKFEPRDRALTPEEIGLMYQYMERIGTTPSIRAAAKLLLLTMVRKSELTNATWSEINFI 253

Query: 219 NNIFSIKTQ--KTGTIITVELPDGFMKLLAMTPI---GKETFFINNDKQ--KMNATQFSI 271
           + +++I  +  K      V L    +++         G E    +       M++   + 
Sbjct: 254 DALWTIPKERMKRRNPHLVFLSRQVLEIFTALKTFAGGSEYVLPSRYDSDLPMSSATLNQ 313

Query: 272 WFKAKATKAGVNKS------AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
                   A            H +R+ ++T+  +AG     +      +       Y K 
Sbjct: 314 VLTLTYRLAQKEGQSLGKFGPHDLRRTASTLLHEAGYNTDWIEKCLAHEQKGVRAVYNKA 373

Query: 326 --ADRIRLGIKN 335
              D+ R  +++
Sbjct: 374 EYRDQRRAMLQD 385


>gi|170684056|ref|YP_001744555.1| type 1 fimbriae regulatory protein [Escherichia coli SMS-3-5]
 gi|218700830|ref|YP_002408459.1| Type 1 fimbriae regulatory protein fimB [Escherichia coli IAI39]
 gi|170521774|gb|ACB19952.1| type 1 fimbriae regulatory protein, FimB family [Escherichia coli
           SMS-3-5]
 gi|218370816|emb|CAR18629.1| Type 1 fimbriae regulatory protein fimB [Escherichia coli IAI39]
          Length = 209

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 23/151 (15%), Positives = 44/151 (29%), Gaps = 15/151 (9%)

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAM 247
           S+         + GLR S+     +  L+       I+  K G      L    +  +  
Sbjct: 26  SRDVCMILLAYFHGLRVSELLSLQLSDLELTTEKIYIQRIKNGFSTVHPLQKEEVIAITN 85

Query: 248 TPIGKETF-----------FINNDKQKMNATQFSIWFKAKATKAG--VNKSAHGVRKFSA 294
               + +            F++   + ++  +F     A    AG  +    H +R    
Sbjct: 86  WLNERNSLNVKHFNDNPWLFVSRTGKPLSRQRFYNIVSAAGKNAGLNIKVHPHMLRHACG 145

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKG 325
              AD G     +    G + +     YT  
Sbjct: 146 YSLADNGVDTRLIQDYLGHRNIRHTVIYTAS 176


>gi|167470505|ref|ZP_02335209.1| tyrosine recombinase XerD [Yersinia pestis FV-1]
          Length = 145

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 46/134 (34%), Gaps = 15/134 (11%)

Query: 212 AGVQHLQNNIFSIKT-QKTGTIITVELPDG-------FMKLLAMTPIGK---ETFFINND 260
             +  +      ++   K      V L +        +M+      +     +  F +N 
Sbjct: 2   LTISDVSLRQGVVRVIGKGNKERLVPLGEEAVYWIENYMEHGRPWLVNGASLDVLFPSNR 61

Query: 261 KQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVD 317
            Q+M    F    K  A  AG++    S H +R   AT   + GA    +    G   + 
Sbjct: 62  SQQMTRQTFWHRIKHYAILAGIDSERLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLS 121

Query: 318 QAETYTKGA-DRIR 330
             + YT  A +R+R
Sbjct: 122 TTQIYTHVATERLR 135


>gi|150006639|ref|YP_001301383.1| integrase [Bacteroides vulgatus ATCC 8482]
 gi|254881458|ref|ZP_05254168.1| integrase [Bacteroides sp. 4_3_47FAA]
 gi|319642845|ref|ZP_07997482.1| integrase [Bacteroides sp. 3_1_40A]
 gi|149935063|gb|ABR41761.1| integrase [Bacteroides vulgatus ATCC 8482]
 gi|254834251|gb|EET14560.1| integrase [Bacteroides sp. 4_3_47FAA]
 gi|317385520|gb|EFV66462.1| integrase [Bacteroides sp. 3_1_40A]
          Length = 267

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 44/282 (15%), Positives = 94/282 (33%), Gaps = 27/282 (9%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           ++++++      +LA N+  S+       +   G+ + + +       G       P + 
Sbjct: 1   MVTKFKNHLAKTNLAKNTVTSYVWTVQYFLNHYGEVNKKNLLA---YKGYLVENFKPQTV 57

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI--RPWTKEDMQQFKSFWSEGSQ 191
              L  +    ++  +++         V+  K + +       +  D +  K+       
Sbjct: 58  NLRLQGINKYLEFTKQEKL-------KVKFVKVQQKNFLENVISDADYKFLKAQLKADGY 110

Query: 192 PRLAFE--FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM----KLL 245
               F   F+  +G R S+      +H+Q     +   K G I  + +P        K L
Sbjct: 111 DEWYFIVWFMAATGARVSELLHIKAEHIQIGHLDLY-SKGGKIRRLYIPKNLRTEAAKWL 169

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGA 302
               +     F+N   Q++     +   K  A K G+NK     H  R   A    D   
Sbjct: 170 REIGLTSGYIFLNRFGQRITTRGIASQLKHFAEKYGMNKEVVYPHSFRHRFAKNFLDRFN 229

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
               L    G ++++    Y +     R   +  + +  VV+
Sbjct: 230 DLALLADLMGHESIETTRIYLR-----RTASEQQKIVDKVVN 266


>gi|116329653|ref|YP_799372.1| XerD related protein [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116122546|gb|ABJ80439.1| XerD related protein (integrase family) [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
          Length = 298

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 50/302 (16%), Positives = 105/302 (34%), Gaps = 25/302 (8%)

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESY-FDQIIRKSGDFDYRKITTKH 118
            ++ P+K   +++ LI   R+     +    +  ++  Y  D +     D    KIT K 
Sbjct: 3   ELDVPKKNKHSVERLIKIIRQ----RNYKKATAYTYMKYNLDFL--HFADKPAEKITVKD 56

Query: 119 IRSGVE---SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
           +   ++    RK + S+    ++S+++ F     ++ + +N     +RP R+       T
Sbjct: 57  LNRYMDHLRKRKVSSSTIQINVSSLKMFF-----EDVMKMNLFQDFQRPVREYNNPNAIT 111

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTII 233
            ++MQ      S  ++  L    + + GLR  +       HL        IK        
Sbjct: 112 YKEMQSILKTASSNAKHELMCGLVYFGGLRVGELITLRWAHLDTKRKSIHIKVPVLSQSR 171

Query: 234 TVELPDGF----MKLLAMTPIGKETFFI--NNDKQKMNATQFSIWFKAKATKAGV--NKS 285
           TVE+P        K          T+     +      +             +G+    +
Sbjct: 172 TVEIPAELGTLIKKYEREVISSSSTYLFPGKSLGSHTTSRNVERIISEIGRNSGISSPIT 231

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345
              +R   A      G++ + +    G KT+   E+Y      +R  ++   R  ++ + 
Sbjct: 232 VFTLRHSRALHLIADGSSLNHVKDFLGHKTLASTESYLPVKRNLRSSVREKSRQEALKNI 291

Query: 346 DD 347
             
Sbjct: 292 RK 293


>gi|26248739|ref|NP_754779.1| Type 1 fimbriae regulatory protein fimB [Escherichia coli CFT073]
 gi|26109145|gb|AAN81347.1|AE016764_29 Type 1 fimbriae Regulatory protein fimB [Escherichia coli CFT073]
 gi|307554410|gb|ADN47185.1| type 1 fimbriae regulatory protein [Escherichia coli ABU 83972]
          Length = 209

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 23/151 (15%), Positives = 44/151 (29%), Gaps = 15/151 (9%)

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAM 247
           S+         + GLR S+     +  L+       I+  K G      L    +  +  
Sbjct: 26  SRDVCMILLAYFHGLRVSELLSLQLSDLELTTEKIYIQRIKNGFSTVHPLQKEEVIAITN 85

Query: 248 TPIGKETF-----------FINNDKQKMNATQFSIWFKAKATKAG--VNKSAHGVRKFSA 294
               + +            F++   + ++  +F     A    AG  +    H +R    
Sbjct: 86  WLNERNSLNVKHFNDNPWLFVSRTGKPLSRQRFYNIVSAAGKNAGLNIKVHPHMLRHACG 145

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKG 325
              AD G     +    G + +     YT  
Sbjct: 146 YSLADNGVDTRLIQDYLGHRNIRHTVIYTAS 176


>gi|209916846|ref|YP_002291166.1| phage integrase [Escherichia coli SE11]
 gi|209915272|dbj|BAG80344.1| phage integrase [Escherichia coli SE11]
          Length = 332

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 43/274 (15%), Positives = 82/274 (29%), Gaps = 33/274 (12%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDY------RKITTKHIRSGVESRKHTPSSAIQFLTSMR 141
           A N+  ++    +  +              R     ++RS    R+   ++    LT +R
Sbjct: 31  APNTIDAYARGVNDWLAFCHSVALTAAVAGRDTVALYVRSLHTGRQLAAATIRHRLTVVR 90

Query: 142 VLFKWAVRQEYVAINPCL-SVERPKRKTEG-------IRPWTKEDMQQFKSFWSEGS--- 190
           +   W   +     NP    V +   K +          PW  +D +  +     G    
Sbjct: 91  LYNDWLCEEGIRERNPVRRGVWKNGGKGKAGIVPLQRRLPWIPDDAEWLRFLEVAGQADI 150

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ--KTGTIITVELPD------- 239
           + R         GLR  + C      +     + +++ +  K      V           
Sbjct: 151 RTRFMLALAYDCGLRREELCTVATGDIDPSQRLLTVRAEHTKNRFGRVVPYSPVTGELYT 210

Query: 240 -GFMKLLAMTPIGKETFF---INNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSA 294
               +   ++      F      N  + ++   +S   +  A KA +   S H  R    
Sbjct: 211 AWLTERRMLSSSRGPLFLSRSPRNRAEPISNWTWSKVVRGLAIKADLPLISTHTFRHLCL 270

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           T  A  G   HE+ A  G + +     Y   + R
Sbjct: 271 TELARVGWDIHEIAAFAGHRRIQSTLLYIHLSAR 304


>gi|193064166|ref|ZP_03045250.1| prophage DLP12 integrase [Escherichia coli E22]
 gi|218557442|ref|YP_002390355.1| integrase; DLP12 prophage [Escherichia coli S88]
 gi|256023847|ref|ZP_05437712.1| putative integrase; DLP12 prophage [Escherichia sp. 4_1_40B]
 gi|260842731|ref|YP_003220509.1| putative integrase [Escherichia coli O103:H2 str. 12009]
 gi|300925815|ref|ZP_07141669.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 182-1]
 gi|301327810|ref|ZP_07221004.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 78-1]
 gi|192929195|gb|EDV82805.1| prophage DLP12 integrase [Escherichia coli E22]
 gi|218364211|emb|CAR01876.1| putative integrase; DLP12 prophage [Escherichia coli S88]
 gi|257757878|dbj|BAI29375.1| predicted integrase [Escherichia coli O103:H2 str. 12009]
 gi|294493655|gb|ADE92411.1| site-specific recombinase, phage integrase family [Escherichia coli
           IHE3034]
 gi|300418109|gb|EFK01420.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 182-1]
 gi|300845647|gb|EFK73407.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 78-1]
 gi|320201465|gb|EFW76045.1| Phage integrase [Escherichia coli EC4100B]
 gi|323160889|gb|EFZ46814.1| prophage DLP12 integrase [Escherichia coli E128010]
          Length = 387

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 42/265 (15%), Positives = 95/265 (35%), Gaps = 35/265 (13%)

Query: 112 RKITTKHIRSGVESRKHTP---------SSAIQFLTSMRVLFKWA-VRQEYVAINPCLSV 161
           ++I  + +++ +   K  P          +  + L  ++ + + A    +++   P   +
Sbjct: 116 KEIWKQKVQAAIRKGKEPPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPV--I 173

Query: 162 ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN- 220
           + P  + + +R   KE+ ++      E  +  + F     +GLR S+      Q +    
Sbjct: 174 KIPAVRNKRVRWLEKEEAKRLIDECPEPLKSVVKFALA--TGLRKSNIINLEWQQIDMQR 231

Query: 221 ---IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK-------------QKM 264
                + +  K+   I V L D   K+L         +   + K             +KM
Sbjct: 232 RVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKM 291

Query: 265 NATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
                + W      +AG+ +   H +R   A+    +G     L    GW++++    Y 
Sbjct: 292 RIDSKTSWLS-ACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYA 350

Query: 324 KGADRIRLGIKNSRRISSVVDSDDP 348
             A       +++R+I  +   + P
Sbjct: 351 HLAPNHL--TEHARKIDDIFGDNVP 373


>gi|326564073|gb|EGE14315.1| putative integrase/recombinase protein [Moraxella catarrhalis
           103P14B1]
          Length = 320

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 52/267 (19%), Positives = 99/267 (37%), Gaps = 28/267 (10%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF---DYRKITTKHIRSGVESR 126
           +L  +I  YR      SL  N + + ES  + ++++  D       +IT K + +  + R
Sbjct: 46  SLLEVIDIYRN--KVLSLRKNGKRA-ESIINIMVKQHPDLVTTAITQITPKQLSAYRDRR 102

Query: 127 --KHTPSSAIQFLTSMRVLFKWAVRQEYV-AINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
             + +  S +  L+ +  +F +A+ + Y+   NP   V+RP +     R  T E+  +  
Sbjct: 103 LLQVSQGSVLLELSFLNCVFNYAINELYIFETNPMNKVKRPSKPASRDRRITLEEEAKIL 162

Query: 184 --SFWSEGSQPRLA-------FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234
             + ++ G  P          F F L + +R  +       H+  N   I   K G    
Sbjct: 163 QWTGYTLGDVPDTCRKQVGWCFLFALQTAMRRGEILALTKDHIHENYVHISHSKNGMARN 222

Query: 235 VEL-PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKF 292
           V L       L  +TP+    F I           F++ ++    +  + +   H  R  
Sbjct: 223 VILNTTARQMLKQVTPLTDRLFCIR-------LDNFNLIWRRMRQQLWIKDLHFHDTRHE 275

Query: 293 SATIS-ADAGATAHELMATYGWKTVDQ 318
           + +    D      +L    G K +  
Sbjct: 276 AISRMVRDLNIPVEKLAKITGHKDIKT 302


>gi|322384085|ref|ZP_08057803.1| phage integrase-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321151165|gb|EFX44474.1| phage integrase-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 219

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 26/187 (13%), Positives = 54/187 (28%), Gaps = 32/187 (17%)

Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217
             +V+ PK +   I  W+ +++++F        Q R+AF   LY+G+R  +      + +
Sbjct: 1   MENVDAPKFERRDIVTWSMDEVRKFLDNVPA-DQYRIAFILALYTGMRRGEILGLRWKDV 59

Query: 218 Q----------------NNIFSIKTQKTGTIITVELPDGFMKLLAMTPI----------- 250
                              +   + +       + L    +  L                
Sbjct: 60  DLKTGKASIRQALTKTKMGLIFQEPKTKNAKRQIALSQEVISALKKHKHWVNKNMVQHGP 119

Query: 251 ---GKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHE 306
                +    + D + +        F  +     + N   H +R   ATI    G     
Sbjct: 120 EYQNHDLVCCHEDGRPIAPRTLQNVFHKRCEALELPNIRFHDLRHTHATIMLQLGQHPKV 179

Query: 307 LMATYGW 313
           +    G 
Sbjct: 180 VSERLGH 186


>gi|295189228|gb|ADF83415.1| putative integrase [Lactobacillus phage LBR48]
          Length = 394

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 38/294 (12%), Positives = 92/294 (31%), Gaps = 44/294 (14%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV------ 123
           +      ++        L+  +   ++   + I    GD  +RKI T   +  +      
Sbjct: 61  SFSDYFQKWFHIFREPGLSDTTIARYQYTINVIDEYFGDTLFRKIKTADYQEFLNWFGNG 120

Query: 124 ---ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS--VERPKRKTEGIRPWTKED 178
              +++ H  ++A +  T +R   + AV    ++ +   +  V     +T  I+  + +D
Sbjct: 121 NGKDAKPHAKATADKINTHIRAAVRNAVNDSVISRDFTQNTHVVYDSSRTREIKWLSYDD 180

Query: 179 MQQFKSF---WSEGSQPRLAFEF-LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---- 230
             +  ++     EG           L +G+R  +        + +    IK  KT     
Sbjct: 181 AAKLYNYTLNHLEGIDVVPYMVLTALLTGMRQQEIAGLTWDDIDSKGGFIKITKTWNWTK 240

Query: 231 ----------TIITVELPDGFMKLLAMTPIG-------------KETFFINNDKQKMNAT 267
                     ++ T+ +    + +L                       F++   +  ++ 
Sbjct: 241 RDFGPTKNPASVRTISIDRNLVNILTKLQYEQKRYLKVNDKTNPHSLVFLSRYNRVPSSK 300

Query: 268 QFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
             +         A +N     HG+R   A+I      +   +    G + +   
Sbjct: 301 ALNDRLHELMKDADINIYLRFHGLRHTHASILLYQKMSIAYISHRLGHQDIATT 354


>gi|256374329|ref|YP_003097989.1| integrase family protein [Actinosynnema mirum DSM 43827]
 gi|255918632|gb|ACU34143.1| integrase family protein [Actinosynnema mirum DSM 43827]
          Length = 437

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 45/298 (15%), Positives = 87/298 (29%), Gaps = 63/298 (21%)

Query: 101 QIIRKSGDFDYRKITTKHIRS-----GVESRKHTP----SSAIQFLTSMRVLFKWAVRQE 151
            ++   G     K+  +H+         +S K  P    S+A Q   ++R     AVR++
Sbjct: 109 HLVPGIGAHRLVKLQPEHLEKLYRAIMRKSTKFGPTTSSSTAHQVHRTIRAALNVAVRRK 168

Query: 152 YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCR 211
           ++  NP L    PK +   + P++ + ++      +   +    +   L  GLR  ++  
Sbjct: 169 HLTENPALEARAPKLEETEVEPYSVDQVKALL-VTALKRRNSARWAIALALGLRQGEALG 227

Query: 212 AGVQHLQNNIFSIKTQKTGTIITVE----------------------------------- 236
              Q +   + ++  ++                                           
Sbjct: 228 LRWQDVDLEVGTLVVRRNRLRPKWRHGCTEPCGKKHGGYCPQRVALREETAGTKSAAGKR 287

Query: 237 ---LPDGFMKLLAM--------------TPIGKETFFINNDKQKMNATQ-FSIWFKAKAT 278
              LPD  ++LL +                      F       +N    +  W +    
Sbjct: 288 GMGLPDELVRLLRVHRDVQARERERAAELWTDTGYVFTTPTGGPLNPRSDYDEWKRLLDI 347

Query: 279 KAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
               +   H  R  +AT+    G     +M   GW     A  Y      IRL +   
Sbjct: 348 AKVPDGRLHDARHTAATVLLLLGVPERTVMGIMGWSNTAMAARYQHVTAAIRLDVAQR 405


>gi|167915870|ref|ZP_02502961.1| site-specific recombinase, phage integrase family protein
           [Burkholderia pseudomallei 112]
          Length = 228

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 31/215 (14%), Positives = 62/215 (28%), Gaps = 39/215 (18%)

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA------ 195
           ++F  AVR+     NP   +   K +T+  R  T +++   ++     +  + A      
Sbjct: 1   MIFAHAVRRGLRDRNPAREIGSAK-ETKRDRYITDDELDTVRAAIVASADDKTASARSFL 59

Query: 196 --FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT----GTIITVELPDGFMKLLAMTP 249
              +    +  R  D      Q + ++  S +  +T    G  + +E+     + L    
Sbjct: 60  CLIDLAYQTAQRIGDLLALNWQDVSDDGISFRPSQTVNRSGVRLLIEMTPDLQETLNRAR 119

Query: 250 IGK----ETFFINNDKQKMNATQFSIWFKAKATKA-------------------GVNKSA 286
            GK          +             +K    +A                    +    
Sbjct: 120 GGKIASIGPMICTHASGCYTYIGAYSAWKRACLRARSAYEKDCKKKGITPNPKYLIGMHF 179

Query: 287 HGVR-KFSATISADAGATAHELMATYGWKTVDQAE 320
           H +R K         GA A +  +  G  T     
Sbjct: 180 HDLRAKALTDPKRQQGAAAAQ--SLAGHTTESMTA 212


>gi|83311024|ref|YP_421288.1| integrase [Magnetospirillum magneticum AMB-1]
 gi|82945865|dbj|BAE50729.1| Integrase [Magnetospirillum magneticum AMB-1]
          Length = 316

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 33/182 (18%), Positives = 59/182 (32%), Gaps = 11/182 (6%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH- 128
           ++      Y K     +LA  +R  F     +I    G     K+TTKHI   +      
Sbjct: 74  SVAAWCGRYAKILEDRTLADETRREFSRRIGKIKETLGSHQVDKVTTKHIADFLRPWTDD 133

Query: 129 -TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
                A    + M  +F+ AV   +   NP      P+      R      +  F +  +
Sbjct: 134 GKKRMAQAMRSLMLDMFREAVAAGWAKQNPVAVTRAPRVAVARARL----TLDMFVAIHA 189

Query: 188 EGSQPRLA-----FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
              + +        E  L +  R  D    G + ++     I  +KTG  +++       
Sbjct: 190 VALRDQSPWVGRSMELALVTAQRREDVALMGRKDMREGRLWITQEKTGARVSIPADLRLQ 249

Query: 243 KL 244
            +
Sbjct: 250 AV 251


>gi|228910502|ref|ZP_04074317.1| Site-specific recombinase, phage integrase [Bacillus thuringiensis
           IBL 200]
 gi|228849268|gb|EEM94107.1| Site-specific recombinase, phage integrase [Bacillus thuringiensis
           IBL 200]
          Length = 406

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 51/345 (14%), Positives = 109/345 (31%), Gaps = 43/345 (12%)

Query: 22  IYYFRKGH----GRRIRLPYPHESTFIPAYMSALTGSTPK-REYINSPRKKPTTLKWLIS 76
           ++ +R  +    G+R         +   A  S L       R           T+   + 
Sbjct: 36  LWMYRHKYYDNIGKRKEKKKSGFKSEKAALKSLLEVKAATIRGESKQVEHDQMTIGEWLD 95

Query: 77  EYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE---SRKHTPSS 132
            +  +    S    SR   E     Q+    G +  + +     +        +K+ PS+
Sbjct: 96  TWYNTHK-NSWKPTSRAQREMAIRLQMKPLLGHYKLQTLDRTTYKREFLNVLEKKYKPST 154

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT---EGIRPWTKEDMQQFKSFWS-- 187
              F T  ++    AV  E ++ N    ++   ++T   E    +T E + +F S     
Sbjct: 155 VHLFHTLFKIAINAAVEDEILSRNRFTKIKLSSQETLKEENNNYFTPEQLVEFLSIAKRE 214

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHL------------QNNIFSIKTQKTGTIITV 235
           E +        + Y+G+R  ++C    +++            ++N      +   +  T+
Sbjct: 215 ENATNYTFLLTVAYTGIRRGEACGLQWKNINFDNKTITIERTRDNKGIRSPKTKNSYRTI 274

Query: 236 ELPDGFMKLLAMT-------------PIGKETFFINND--KQKMNATQFSIWFKAKATKA 280
            + D  +  L++               +  E+F   +      +  +     F+    K 
Sbjct: 275 LIDDVLVNQLSIYRKWCMETMLSFGYKLQDESFVFTSYQTGNPITDSSVLYAFRRVLNKT 334

Query: 281 GVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            +   + HG+R    TI  + G     +    G       E Y  
Sbjct: 335 NLPSITIHGLRHTHCTILLNQGLNVKVIAERLGNTPQMIYEIYGH 379


>gi|257790694|ref|YP_003181300.1| integrase family protein [Eggerthella lenta DSM 2243]
 gi|257474591|gb|ACV54911.1| integrase family protein [Eggerthella lenta DSM 2243]
          Length = 357

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 42/283 (14%), Positives = 85/283 (30%), Gaps = 29/283 (10%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGV----- 123
           T       Y        L  ++    E     +++    +    +I T  I         
Sbjct: 56  TFGEFFKVYEADLR-PRLREHTWRQKEYAIKSRVLPFFANKKMDEIRTIDIVRWQNALMA 114

Query: 124 -ESRKHTPSSAIQFLTS---MRVLFKWAVRQEYVAINPC-LSVERPKRKTEGIRPWTKED 178
            ++    P SA    T    +  +   A R   ++ NP   +V+   ++   +  WTK++
Sbjct: 115 PDANDGKPYSATYLRTLNNQLTAILNHAERYYGLSPNPAMRTVKMGGKEARTMNFWTKDE 174

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---------------NNIFS 223
             +F     +  +  + FE L ++G+R  +                              
Sbjct: 175 YLRFSDATMDDPRAFVIFEVLYWTGVREGELLALTPDSFDWKKSTMRIDKSYQRLGGRDV 234

Query: 224 IKTQKTGTII-TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
           I   KT   + TV++       +             +    ++    S   +     +GV
Sbjct: 235 ITDPKTPKSVRTVKMSRFLADEVRDYANHHPEIGEGDRLFPVSKHYISHAMQRGCAASGV 294

Query: 283 NK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            K   H +R    ++  + G TA  +    G +  D    Y  
Sbjct: 295 KKIRVHDLRHSHVSLLINMGFTALAIADRMGHEATDITFRYAH 337


>gi|319762191|ref|YP_004126128.1| integrase family protein [Alicycliphilus denitrificans BC]
 gi|317116752|gb|ADU99240.1| integrase family protein [Alicycliphilus denitrificans BC]
          Length = 414

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 50/363 (13%), Positives = 97/363 (26%), Gaps = 51/363 (14%)

Query: 10  FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
           F+   R R G+   Y   G   ++      +         A        +      ++  
Sbjct: 42  FLVAYRLRDGRKNRYV-IGRTPQLTPAQARDEAKKVLGDVARGIDPNDDKRQQRREERKP 100

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--- 126
           TL+  I E+   A W    + +     +      ++  D     +T          R   
Sbjct: 101 TLEVFIDEHY--APWARAHLGTADKTLARMRVAFKEHFDKRLDSLTAWQFDKWKSERLKS 158

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE-GIRPWTKEDMQQFKSF 185
              P+S  + L S+R     AV  E +  +P   V++ K   +  +R  +  +  + +  
Sbjct: 159 GLKPTSVNRELASLRSALTKAVEWELIPEHPLRKVKQAKVDEDHRVRFLSDAEETRLREV 218

Query: 186 WSEGS--------------------------------QPRLAFEFLLYSGLRCSDSCRAG 213
             E                                    R      + +GLR  +  +  
Sbjct: 219 LDERDGNARAARVRHNEWRRQRGHEALPLIAEGTFIDHIRPMILVTINTGLRRGELFKLK 278

Query: 214 VQHLQNNIFSIKTQ----KTGTIITVELPDGFMKLLAM-----TPIGKETFFINNDKQKM 264
              +      +K +    K+G    + L D    +L           +E  F   D   +
Sbjct: 279 RSDIDMEKRMLKVRAAAAKSGKSRFIPLNDEAATMLTRWMDQHPAEDEELVFPGKDGAPL 338

Query: 265 N-ATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
                              +   H +R   A+    AG   + +    G   +     Y 
Sbjct: 339 TNVDSAWGSIVRAVKLKDFH--WHDMRHHFASRLVMAGVDLNTVRELLGHADLKMTLRYA 396

Query: 324 KGA 326
             A
Sbjct: 397 HLA 399


>gi|28379038|ref|NP_785930.1| prophage Lp3 protein 1, integrase [Lactobacillus plantarum WCFS1]
 gi|28271876|emb|CAD64781.1| prophage Lp3 protein 1, integrase [Lactobacillus plantarum WCFS1]
          Length = 385

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 45/314 (14%), Positives = 111/314 (35%), Gaps = 49/314 (15%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-KHTPSS 132
             ++Y+++    +  V ++  F  +   I     D+   KI+ K  +  +        + 
Sbjct: 77  WFTQYKQTVKESTW-VTTQRLFRLHILPI---FSDYRIAKISIKDCQKAINQWFNAGLAK 132

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP-----WTKEDMQQFKSFWS 187
               +  +  +  +A+  + ++ NP   V  P  K +  R      + K ++Q F    +
Sbjct: 133 YHTLMNYVAKVLDYAINIDLISENPAKRVIVPVNKNDRSRKNLENYFDKAELQHFFECLT 192

Query: 188 EG---SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-----GTIITVELPD 239
           +     Q  + F    ++G+R S+        +  +  +I+  KT     G  + V+ P 
Sbjct: 193 DDDNTPQASVFFRLAAFTGMRKSEMLCLEWSDIDFSNHTIRVNKTQSRGDGARLLVQAPK 252

Query: 240 GFM--KLLAMTPI-------------------------GKETFFINNDKQKMNATQFSIW 272
                + + + P                          G    F N + +    ++   W
Sbjct: 253 TARSNRTVYLDPTTIKILQHWQVDQKKWLLRFGFNINQGNHYVFANENNEMFQPSKPRKW 312

Query: 273 FKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIR 330
            +   TK  +   + H  R   AT++ +A A+   +    G  +     + YT    + +
Sbjct: 313 LEHTLTKYDLKHVTVHAFRHTYATLAFEAHASIKSVQDQLGHSSYRTTLDIYTAVTAKQK 372

Query: 331 LGIKNSRRISSVVD 344
              + + ++++ ++
Sbjct: 373 --NEATEKLANYLN 384


>gi|307268429|ref|ZP_07549807.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX4248]
 gi|306515236|gb|EFM83773.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX4248]
          Length = 309

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 44/288 (15%), Positives = 91/288 (31%), Gaps = 44/288 (15%)

Query: 73  WLISEYRKSAHWGSL------AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
            L  EY   + W  L         S   +     ++   +     + +  +  +  +   
Sbjct: 9   QLFHEYF--SEWVELYKVGAIRDISLQKYYIAEQRLAELAPGLKVKHLDRQRYQQLLNDY 66

Query: 127 KHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV----ERPKRKTEGIRPWTKEDMQ 180
             T    + + F   ++     AV +  ++ NP   +    + P+ K        + ++Q
Sbjct: 67  ALTHERQTTMDFHHQLKGAILDAVDEGLISKNPTRKIVIEGKAPRPKKSKF--LNQFEVQ 124

Query: 181 QFKSFWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSIKTQKT--------- 229
                   G Q    +  LL   +GLR S++     +    +   I  +KT         
Sbjct: 125 ALLKELELGEQLNWDWFILLVVKTGLRFSEALALTPKDFDFSKQKITIEKTWNYKNPTGF 184

Query: 230 -----------GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKAT 278
                         I  +    F +L+   P  +  F      +  N+T  +   K    
Sbjct: 185 FQSTKNESSKRKVQIDWQTAMQFSQLIRNMPPMEPIFV---KGRVFNST-INNRLKVLCK 240

Query: 279 KAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
           +A +   + H +R   A++   AG +   +    G  ++    ETY  
Sbjct: 241 RAQIPVITVHSLRHTHASLLLFAGVSIASVATRLGHSSMTTTQETYLH 288


>gi|227549586|ref|ZP_03979635.1| phage integrase [Corynebacterium lipophiloflavum DSM 44291]
 gi|227078350|gb|EEI16313.1| phage integrase [Corynebacterium lipophiloflavum DSM 44291]
          Length = 410

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 46/269 (17%), Positives = 97/269 (36%), Gaps = 32/269 (11%)

Query: 85  GSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE----SRKHTPSSAIQFL-- 137
           G ++ + R   ES +   I    G     +I    + + V     ++   P +A + L  
Sbjct: 93  GDVSDSYRGDCESIWRVHIHPTWGRRRIAEIQDHQVTAWVAGLTTTKGVKPGAAPRELGS 152

Query: 138 -------TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
                    M+ L + AV  + +  NP    + P++K    R  T E++    +      
Sbjct: 153 SQRRKIANMMKSLLQRAVILKIIPANPLEHTQAPRQKKAERRYLTIEEVDALLAAAQT-D 211

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQ------------NNIFSIKTQKTGTIITVELP 238
             +L  E LL +GLR  ++    V+ L             +++  +   KT     V + 
Sbjct: 212 AVKLMVEVLLKTGLRPGEAKGLKVRDLDRARRRLTIRRDVDDLGRVDETKTRQHRDVPIS 271

Query: 239 DGFMKLLAMTPIGKET---FFINNDKQKMNATQFSIWFKAKATKAGVNKSAHG--VRKFS 293
              + LL     G+++      +         ++   ++     AGV+++     +R  +
Sbjct: 272 QLTLLLLERAADGRDSDAWLLPDERGHVWTTARWRPIWENLLVDAGVDRTLKTYELRHTA 331

Query: 294 ATISADAGATAHELMATYGWKTVDQAETY 322
            +++  AGA  + +    G  +      Y
Sbjct: 332 VSMAIAAGADVYVVQRMVGHTSAATTLNY 360


>gi|159036854|ref|YP_001536107.1| integrase family protein [Salinispora arenicola CNS-205]
 gi|157915689|gb|ABV97116.1| integrase family protein [Salinispora arenicola CNS-205]
          Length = 363

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 47/147 (31%), Gaps = 13/147 (8%)

Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-----VELPDGFMKLLA------MT 248
             +G+R S++C   +  +      ++    G         V         L         
Sbjct: 210 YATGVRVSEACGLDIADVDPGRRVLRVLGKGNRERTVPYGVPAQRALDAWLRHGRPWLAG 269

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHEL 307
           P       +     ++N T         A  AG+   + HG+R  +AT   + GA    +
Sbjct: 270 PRSANALLLGARGGRLNPTTARGVVARCAAAAGLPPTTPHGLRHATATHLLEGGADLRTV 329

Query: 308 MATYGWKTVDQAETYTK-GADRIRLGI 333
               G  ++   + YT    +R+R   
Sbjct: 330 QELLGHTSLASTQIYTHVSVERLRAAY 356


>gi|116622417|ref|YP_824573.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116225579|gb|ABJ84288.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 264

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 36/233 (15%), Positives = 80/233 (34%), Gaps = 22/233 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG----VESRKHTPSSAIQFLTSM 140
            + A ++   +                 K+  +H+R         +     +  Q++ ++
Sbjct: 15  RNYAQSTVKGYLRIVQDFAEHF-HQQPDKLGPEHLRQYQAHLFRDKHLNAGTVQQYVAAL 73

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200
           R  F   +++ Y+  +    +  PKR  +     + +++       S           L 
Sbjct: 74  RFFFNKTLKRHYLLDD----IPMPKRHRKMPEILSPDEVALLIGSASNLLHQ-TMLMTLY 128

Query: 201 YSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFMKLLA---MTPIGKETF 255
            +G+R ++ CR     + +      I+  K G    V L    ++ L         K   
Sbjct: 129 STGVRRAELCRLKSADIDSQRMMVHIRQGKGGHDRDVPLSPRLLETLRVYWRWMKPKTYL 188

Query: 256 F---INNDKQ--KMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301
           F   +NN +    +         +  A +AG+ K  S H +R ++A+ +   G
Sbjct: 189 FPGTVNNWRADVPITTKVPWEACRQAAQRAGITKHVSPHTLRHYAASRTMPRG 241


>gi|308063535|gb|ADO05422.1| integrase-recombinase protein [Helicobacter pylori Sat464]
          Length = 353

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/284 (12%), Positives = 93/284 (32%), Gaps = 55/284 (19%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           L++E+  S + G L++ ++ ++      +       +  +    +I              
Sbjct: 101 LLAEFL-SVYTGGLSLATKKNYRIALLGLFSYIDKQNQDENEKSYIY------------- 146

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS-------FW 186
              L ++  + + A                     +       E++++F           
Sbjct: 147 NITLKNISGVNQSA-------------------GNKLPTHLNNEELEKFLEGIDKIEMSA 187

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDG---- 240
              ++ RL  + ++++G+R +++ +  ++    +N  ++I  +  G      +       
Sbjct: 188 KVRARNRLLIKIIVFTGMRSNEALQLKIKDFTLENGCYTILIKGKGDKYRAVMLKAFHIE 247

Query: 241 --FMKLL---AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKF 292
               + L    + P+  +  F N     +         +     AG+ +    AH +R  
Sbjct: 248 SLLKEWLIERELYPVKNDLLFCNQKGNALTQAYLYKQVERIINFAGLRREKNGAHMLRHS 307

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
            AT+          +    G  +++ +  YT   D+ RL    S
Sbjct: 308 FATLLYQKRHDLILVQEALGHASLNTSRIYTH-FDKQRLEEAAS 350


>gi|330007869|ref|ZP_08306091.1| site-specific recombinase, phage integrase family [Klebsiella sp.
           MS 92-3]
 gi|328535281|gb|EGF61769.1| site-specific recombinase, phage integrase family [Klebsiella sp.
           MS 92-3]
          Length = 416

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 55/359 (15%), Positives = 123/359 (34%), Gaps = 39/359 (10%)

Query: 22  IYYFRKGHGRRIRLPYPHE----------STFIPAYMSALTGSTPKREYINSPRKKPT-- 69
            Y +R    R   +   +              I A      G +P     +  ++     
Sbjct: 38  RYDYRINGRRETLVIGQYGRDGITLAEARDELIAAKKLLNAGQSPAAAKRDGIKRIRGAE 97

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVES--R 126
           T       Y K      LA ++R   +S  D+ I+   G+    +ITT  +R   +    
Sbjct: 98  TFTVHTDAYMKHVV---LADSTRAMKQSVIDRDILPVLGNKMMSEITTPMVRDLCDRIVE 154

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK--TEGIRPWTKEDM-QQFK 183
           +   ++A+Q    +  ++++A  + +   NP   ++           R    E++   F+
Sbjct: 155 RGGRATAVQAREIISSVYRYANDRGHGLFNPAADIKPSAIAMFKPRDRCLQPEEIGVLFR 214

Query: 184 SFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIITVEL 237
           +  +  + P  +LA + +L + +R ++   A  + +  +  +        K      + L
Sbjct: 215 ALDTVSTLPTLKLAVKLILITMVRKTEFIMATWKEVDFSKGTWTIPSDRMKGSRSHVIYL 274

Query: 238 PDGFMKL---LAMTPIGKETFFINNDK--QKMNATQFSIWFKAKATKAGV------NKSA 286
           P     L   L M   G E          + ++    +         A          + 
Sbjct: 275 PPQAQDLMIGLQMCAGGSEYLLPGRYSTSKPLSNAALNSVIDRAVAAAADAGDSLQPLTV 334

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345
           H +R+ ++T+  +AG  +  +      +       Y K A+  R      ++ +++VD+
Sbjct: 335 HDLRRTASTLLHEAGFPSDWIEKALAHEQKGVRAVYNK-AEYSRQRAYMLQQWANMVDA 392


>gi|323698902|ref|ZP_08110814.1| integrase family protein [Desulfovibrio sp. ND132]
 gi|323458834|gb|EGB14699.1| integrase family protein [Desulfovibrio desulfuricans ND132]
          Length = 351

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 36/226 (15%), Positives = 72/226 (31%), Gaps = 13/226 (5%)

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI-NPCLSVERPKRKTEGIRPWTKEDMQ 180
              S+  + +SA +   ++   + W ++   +   NP   V+R             +D +
Sbjct: 120 ARVSKAVSGNSANKDRKNLAAAWVWGIKYLNLDRDNPFQHVDRFPEDRHPRYVPPLDDFR 179

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ------NNIFSIKTQKTGTIIT 234
           +       G + R       ++  R S+  +     +             +         
Sbjct: 180 KVLDL--AGPRRRQLLLLAFHTAPRRSELWKLKWSEVDFGLGLVGYWTRKRRSGNAEFDE 237

Query: 235 VELPDGFMKLLAMTP--IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRK 291
           + +  G    LA      G E     N    +     + W K   T+AGV     HG+R 
Sbjct: 238 LPMSAGLRAKLAEWKLVSGAEDLVFGNRFNGL-LDPNNRWLKRLCTEAGVKPFGFHGIRH 296

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
            +A ++ D GAT  E+      K++   + Y     +    +    
Sbjct: 297 LAARVAIDNGATIMEVKHLLRHKSIATTQRYILRVKKTTGAVDALD 342


>gi|320196994|gb|EFW71613.1| Phage integrase [Escherichia coli WV_060327]
          Length = 387

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 42/265 (15%), Positives = 95/265 (35%), Gaps = 35/265 (13%)

Query: 112 RKITTKHIRSGVESRKHTP---------SSAIQFLTSMRVLFKWA-VRQEYVAINPCLSV 161
           ++I  + +++ +   K  P          +  + L  ++ + + A    +++   P   +
Sbjct: 116 KEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPV--I 173

Query: 162 ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN- 220
           + P  + + +R   KE+ ++      E  +  + F     +GLR S+      Q +    
Sbjct: 174 KIPAVRNKRVRWLEKEEAKRLIDECPEPLKSVVKFALA--TGLRKSNIINLEWQQIDMQR 231

Query: 221 ---IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK-------------QKM 264
                + +  K+   I V L D   K+L         +   + K             +KM
Sbjct: 232 RVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKM 291

Query: 265 NATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
                + W      +AG+ +   H +R   A+    +G     L    GW++++    Y 
Sbjct: 292 RIDSKTSWLS-ACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYA 350

Query: 324 KGADRIRLGIKNSRRISSVVDSDDP 348
             A       +++R+I  +   + P
Sbjct: 351 HLAPNHL--TEHARKIDDIFGDNVP 373


>gi|320015236|gb|ADV98807.1| putative transposase [Yersinia pestis biovar Medievalis str. Harbin
           35]
          Length = 416

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 36/257 (14%), Positives = 86/257 (33%), Gaps = 46/257 (17%)

Query: 113 KITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
           +I   H ++    +  +  +   +L+    + ++AV   Y+  +P + +   K+      
Sbjct: 131 QIAGVHQKTRQLKKGRSVRTVNVYLSCFAAMMEFAVANGYIERSPFVGISPLKKSKSEPD 190

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
           P T+++  +         Q +  ++  + +G+R  + C    + +    ++I   +   +
Sbjct: 191 PLTRDEYARLMEVAPS-LQVKNIWKLAVSTGMRHGEICALAWEDIDLKEWTITISRNMAV 249

Query: 233 ITVELPD-----------------GFMKLLAMTPIGKE------------------TFFI 257
           +    P                     + +A+T +GK+                  TF  
Sbjct: 250 VHHFTPPKTESGNRTIKLTNSAIEALKEQMALTKMGKKIKVDVHLREFGKIRKDDCTFVF 309

Query: 258 N--------NDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELM 308
           +              +   FS  +     KAG+ ++ A+  R   A  +  AGA  + + 
Sbjct: 310 SPRLSARNGKGGDWYSPGVFSGTWNFALKKAGIRHRKAYETRHTFACWALSAGANPNFVA 369

Query: 309 ATYGWKTVDQA-ETYTK 324
              G  +       Y K
Sbjct: 370 NQMGHTSSQMVYSVYGK 386


>gi|158318043|ref|YP_001510551.1| integrase family protein [Frankia sp. EAN1pec]
 gi|158113448|gb|ABW15645.1| integrase family protein [Frankia sp. EAN1pec]
          Length = 416

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 33/283 (11%), Positives = 86/283 (30%), Gaps = 41/283 (14%)

Query: 85  GSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFL---TSM 140
              A +++ ++    +  I    G     ++  + ++  +  +     S        + +
Sbjct: 107 SERAESTKSNYRVMVNNHIRPALGSRRLVELKHEDLQRFLNRKAADGYSTSTMRTLRSVL 166

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGI--RPWTKEDMQQFKSFWSEGSQPRLAFEF 198
           R     AV  E ++ N   ++  PK +         +++D  +  +     ++    +  
Sbjct: 167 RQALNEAVITEKISRNVAETLRVPKARKPKRNVAALSRDDGLRLLAEAKS-TRHYALYVL 225

Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII------------------TVELPDG 240
           L   GLR  ++          +  +++  +  T +                  T+ LP  
Sbjct: 226 LAMVGLRRGEALALRWSDFDESAGTLRVVRQVTRVSGVKGLVVGPTKSQAGTRTLTLPTR 285

Query: 241 FMKLLAMTPIGKET--------------FFINNDKQKMNATQFSIWFKAKATKAGVNK-S 285
            +++L      +                 F +     M     +        +AG+    
Sbjct: 286 CVRVLQAHRTAQHAHRQAAGKRWKENGLIFPSTVGTHMEPRGLNTHLSKLCQRAGLPHLG 345

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGAD 327
            H +R  +AT++   G    ++    G   +    + Y    D
Sbjct: 346 PHALRHTAATMAYALGVDWKQIQQMLGHTMLSTTMDIYVDLVD 388


>gi|123441995|ref|YP_001005978.1| P2-like phage integrase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122088956|emb|CAL11767.1| P2-like phage integrase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 327

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 47/303 (15%), Positives = 94/303 (31%), Gaps = 17/303 (5%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87
             G+RIR  +  ++        A+     K         +P T   LI  + K     ++
Sbjct: 20  RAGKRIRKKFKTKAEAQQFERWAIATQNDKDWLEKPADNRPLT--ELIELWWKHHG-QNM 76

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITT---KHIRSGVESRKHTPSSAIQFLTSMRVLF 144
               + + +     +  K G     +IT       R    +      +       +  +F
Sbjct: 77  KDGVKRAHK--LRVMAAKMGHPKASQITRTFFSDYRVLRLAEGKKAKTVNLDQEMLGGVF 134

Query: 145 KWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203
              +    Y + +P  ++++ K   + +   T ++++   S   EG   + A +  L +G
Sbjct: 135 SVLIELGHYHSEHPLKAMKKIKLPAQEMGFLTNDEIRTLLSRL-EGDHLK-AVKLCLATG 192

Query: 204 LRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK 263
            R  +  +     +  N  +    K     TV +     + L         F      + 
Sbjct: 193 ARWGEVAKLRRDEIIGNKVTYLDTKNSKNRTVPISHELCEQLTDGIKTGPLF------KS 246

Query: 264 MNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           +N     I  K  A      ++ H +R   A+     G     L    G   + Q   Y 
Sbjct: 247 LNYPYVRICVKEVAPGLPAGQAVHVLRHTFASHFMMNGGNILALQKILGHSNILQTMNYA 306

Query: 324 KGA 326
             A
Sbjct: 307 HFA 309


>gi|327395182|dbj|BAK12604.1| phage integrase [Pantoea ananatis AJ13355]
          Length = 327

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 43/293 (14%), Positives = 91/293 (31%), Gaps = 41/293 (13%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP--- 130
           L   + K       A  +  ++ +    +          +I  + +R    +    P   
Sbjct: 12  LAERWLKLLSDLGRAPATLTAYRA---ALCHYFAFCSRNRIEPEKVRFDDMAAYIRPQLP 68

Query: 131 --------SSAIQFLTSMRVLFKWAVRQEYVAINP----------CLSVERPKRKTEGIR 172
                   ++    L+++R+ + + +  +   +NP          C +     R  +  R
Sbjct: 69  GMPFPAASATLQLRLSAVRLWYDFLMYLDLCKVNPLPRSGTPGMLCSARGLVPRIVKLPR 128

Query: 173 PWTKEDMQQFKSFWSE-GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKT 229
                  Q F++  ++   + RL         LR S+        L   + +  ++ + T
Sbjct: 129 IPDDAQWQLFQAHAADSPLRDRLMLALTYCGALRRSEVTALSTDDLDFAHRLIRVRAETT 188

Query: 230 GTII------TVELPDGFMKLLAMTPIG---KETFFIN----NDKQKMNATQFSIWFKAK 276
                     +  L       L    +    K   F +    N    ++   +S   +  
Sbjct: 189 KNRHERIVCYSPALTPVLAAHLLQMKLSGMVKGALFRSESDRNQGAPLSYWSWSKTVRKW 248

Query: 277 ATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           A ++G+ + S H  R    T  A AG   HEL    G +     + Y   + R
Sbjct: 249 ALESGLPDISTHTFRHLRLTHLARAGWKLHELATYAGHRDPRTTQIYIHLSGR 301


>gi|218129371|ref|ZP_03458175.1| hypothetical protein BACEGG_00948 [Bacteroides eggerthii DSM 20697]
 gi|317475337|ref|ZP_07934602.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
 gi|217988441|gb|EEC54763.1| hypothetical protein BACEGG_00948 [Bacteroides eggerthii DSM 20697]
 gi|316908504|gb|EFV30193.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
          Length = 405

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 53/322 (16%), Positives = 103/322 (31%), Gaps = 42/322 (13%)

Query: 44  IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII 103
           +P Y+    G   +       ++  +T     S YR+S         ++++   + +   
Sbjct: 100 VPEYL-LQAGEVERERLRVRSKEINST-----STYRQSK-------TTQLNLRQFVE--S 144

Query: 104 RKSGDFDYRKITTKHIRSGV----ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL 159
           R   D  +  IT +   S      +   H        L  +  L   AV +E +  NP  
Sbjct: 145 RGMKDIAFSDITGEFAESFKVFLKKELGHRNGHVNHCLCWLNRLIYIAVDREVLRTNPIE 204

Query: 160 SVERPKRKTEGIRPWTKEDMQQFKSF---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216
            V   K+    +R  ++ ++++              R  F F   +GL  +D+     +H
Sbjct: 205 DVAYEKKDAPKLRHISRNELKRMMETPMPDPMMELARRTFIFSCMTGLAYADTRALHPRH 264

Query: 217 LQ-----NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN----AT 267
           +           I+  KT     + L     ++L       E +   ++ + +       
Sbjct: 265 IGKTSEGRRYIRIRRAKTDVEAFIPLHPVAEQIL-------ELYNTTDEGKPVFPLPVRD 317

Query: 268 QFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
                        G+  N S H  R    T++  AG     +    G   +D  + Y + 
Sbjct: 318 VLWYEVHGMGVALGMRENLSYHMARHSFGTLTLTAGIPIESIARMMGHTNIDSTQVYAQV 377

Query: 326 ADRIRLGIKNSRRISSVVDSDD 347
            DR      +  R+     S D
Sbjct: 378 TDRK--ISSDMDRLMERRKSAD 397


>gi|160945662|ref|ZP_02092888.1| hypothetical protein FAEPRAM212_03193 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443393|gb|EDP20398.1| hypothetical protein FAEPRAM212_03193 [Faecalibacterium prausnitzii
           M21/2]
          Length = 392

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 49/321 (15%), Positives = 101/321 (31%), Gaps = 42/321 (13%)

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGV 123
           ++   T   L   +  S    ++  ++   +       ++          +    +   +
Sbjct: 69  KRTDLTFDALAEVWLHSQR-NAVKESTYAHYSYTLHKYLLPVLSKVPVASLEESFLEQAM 127

Query: 124 E------SRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCL-SVERPKRKTEGIRP 173
           +         H P   SSA + L+ +R + K+A     +   P    V  PK   +   P
Sbjct: 128 QQIIAPIDAAHKPLGNSSARECLSMLRRICKYAAHLRLIR--PMELEVALPKAIDKISVP 185

Query: 174 WTKEDMQQFKSFWSEGSQPR-LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT--- 229
            +  + Q+   +  E   PR +     +  GLR  + C          + ++K  +T   
Sbjct: 186 LSPAEQQRLYQYVQENPTPRKIGLLLGVELGLRIGEICGLQWGDFDLKLGTLKINRTVCR 245

Query: 230 ------------------GTIITVELPDGFMKLLAMTP--IGKETFFIN-NDKQKMNATQ 268
                              +   + +P   + +L      +    +F++ N+ +      
Sbjct: 246 ISCENGHTKVVIQTPKTRTSRREIPIPKQLLIMLKKLRGCVSNAAWFLSGNESKPTEPRC 305

Query: 269 FSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGA 326
           +    K+   +A V +   H +R   AT    AG     L    G    +   + Y    
Sbjct: 306 YRKSIKSYLKQATVRQVRPHALRHTFATTCLQAGCDVKTLSELLGHANANITLQRYVHS- 364

Query: 327 DRIRLGIKNSRRISSVVDSDD 347
           D  R   + +R  S  V   D
Sbjct: 365 DLTRKRREMNRIFSHQVSMRD 385


>gi|326406231|gb|ADZ63302.1| integrase [Lactococcus lactis subsp. lactis CV56]
          Length = 379

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 45/262 (17%), Positives = 86/262 (32%), Gaps = 36/262 (13%)

Query: 99  FDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158
               I K   +   ++TT  I+S +       S+       +R+LFK+A    Y+  NP 
Sbjct: 100 LKGFIEKFSKYKVSEVTTADIQSYLMELDIANSTRKNRRIYIRILFKYAENIGYIDSNPA 159

Query: 159 LSVERPK-------RKTEGIRPWTKEDMQ---QFKSFWSEGSQPRLAFEFLLYSGLRCSD 208
             V  PK        +    +  +KE+M     F   + +  +  LA EF+  +G R  +
Sbjct: 160 DKVVLPKVRLEIETLERANEKFLSKEEMSSVLIFCKSYKKNIRYTLAMEFIFLTGCRFGE 219

Query: 209 SCRAGVQHLQ--------NNIFSIKTQK-----------TGTIITVELPDGFMKLLAMTP 249
                 Q +         ++    +  K            G+I T+ L +  ++++    
Sbjct: 220 FASIRYQDVDFKNKLLRIDHTLEYRVAKYDDRVIQTPKTVGSIRTISLSNRCLEIIDYFQ 279

Query: 250 I---GKETFFINNDKQKMNATQFSIWFKAKATK-AG--VNKSAHGVRKFSATISADAGAT 303
                 +  F+N          F  +      K  G       H +R    ++  + G  
Sbjct: 280 KNCLDDKFVFVNAVGGIFRQPVFYKFICDNCQKVLGNERKYGIHLLRHSHVSLLVELGVP 339

Query: 304 AHELMATYGWKTVDQA-ETYTK 324
              +M   G +        Y+ 
Sbjct: 340 IKAIMERVGHRDESITLRIYSH 361


>gi|323965036|gb|EGB60497.1| phage integrase [Escherichia coli M863]
          Length = 387

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 42/265 (15%), Positives = 95/265 (35%), Gaps = 35/265 (13%)

Query: 112 RKITTKHIRSGVESRKHTP---------SSAIQFLTSMRVLFKWA-VRQEYVAINPCLSV 161
           ++I  + +++ +   K  P          +  + L  ++ + + A    +++   P   +
Sbjct: 116 KEIWKQKVQAAIRKGKEPPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPV--I 173

Query: 162 ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN- 220
           + P  + + +R   KE+ ++      E  +  + F     +GLR S+      Q +    
Sbjct: 174 KIPAVRNKRVRWLEKEEAKRLIDECPEPLKSVVKFALA--TGLRKSNIINLEWQQIDMQR 231

Query: 221 ---IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK-------------QKM 264
                + +  K+   I V L D   K+L         +   + K             +KM
Sbjct: 232 RVTWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKM 291

Query: 265 NATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
                + W      +AG+ +   H +R   A+    +G     L    GW++++    Y 
Sbjct: 292 RIDSKTSWLS-ACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYA 350

Query: 324 KGADRIRLGIKNSRRISSVVDSDDP 348
             A       +++R+I  +   + P
Sbjct: 351 HLAPNHL--TEHARKIDDIFGDNVP 373


>gi|308069821|ref|YP_003871426.1| Integrase [Paenibacillus polymyxa E681]
 gi|305859100|gb|ADM70888.1| Integrase [Paenibacillus polymyxa E681]
          Length = 394

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 58/308 (18%), Positives = 102/308 (33%), Gaps = 65/308 (21%)

Query: 100 DQIIRKSGDFDYRKITT-------KHIR---SGVESRKHTPSSAIQFLT----SMRVLFK 145
           + ++ K G     +ITT         +R   + V+ +    + A + +         +F+
Sbjct: 76  NHVLPKIGHMPIDEITTMILVKLFADMRKPGARVDKKGKKSTLASRTIQYAYDVTNSIFQ 135

Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPW--------TKEDMQQFKSFWSEGSQPRLAFE 197
            AV    +  NP   V+RP+   E  +            E ++         S+ RL F 
Sbjct: 136 RAVEWRVLTKNPLEGVKRPQISKEDKKARKDRKNYFEEDEAVEVIDKLLYTDSKWRLFFL 195

Query: 198 FLLYSGLRCSDSCRAGVQH--LQNNIFSIKTQ----KTGTII-----------TVELPDG 240
             +  G R  +           +NN   I       K G               V++P  
Sbjct: 196 GAIMGGFRRGELIALDEDDCDFENNRLRIDESISSTKNGKADITDTKNEASNDYVDMPQW 255

Query: 241 FMKLLAM------------------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
           +M+ LA+                      +   F +   +    T  S  +K    + G 
Sbjct: 256 YMEELAVHVKGMRKLRFEAKANGTWQGGDRNFVFHSGTGKPYYHTTPSQQWKNWCERHGF 315

Query: 283 -NKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADRIRLGIKNSRRIS 340
            N S HG+R  +AT     GA+  E+       T    ++TY        +  K SR+ +
Sbjct: 316 RNVSLHGLRHTNATYLLGQGASIKEIQHRLRHSTSQVTSDTYAH------VTKKLSRKTT 369

Query: 341 SVVDSDDP 348
           + +D  DP
Sbjct: 370 AHLDVFDP 377


>gi|291280612|ref|YP_003497446.1| site-specific recombinase, phage integrase family [Deferribacter
           desulfuricans SSM1]
 gi|290755314|dbj|BAI81690.1| site-specific recombinase, phage integrase family [Deferribacter
           desulfuricans SSM1]
          Length = 321

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 45/286 (15%), Positives = 94/286 (32%), Gaps = 35/286 (12%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRK----SGDFDYRKITTKHIRSGVESR-----KH 128
           + +     + + N+   +    D  I        + D   I   +I+  +  R     K 
Sbjct: 22  FIEDLRVRNYSNNTIELYSKEIDYFIEYSRGYVDEMDINDINRPYIQGSLAYREEISIKD 81

Query: 129 TPSSAIQ--FLTSMRVLFKWAVRQEYVAINPCLSVERPK--RKTEGIRPWTKEDMQQFKS 184
           + SS  +  ++ +++  F +         +      + K   +T+     T++++ +  +
Sbjct: 82  SISSNTKQIYIKALKQFFIFITENNREYKDYTTIFRKIKIVTQTKEKEYLTEQEISKLLN 141

Query: 185 FWSEGSQPR---------LAFEFLLYSGLRCSDSCRAGVQHLQNNIFS------IKTQKT 229
           +       R            + LLYSGLR S++ +      +    +      IK +  
Sbjct: 142 YLEVLKSRRESIVTFRNVFLIKLLLYSGLRISEALQLKFTDFEEIAINNTYYYQIKVKGK 201

Query: 230 G---TIITVE---LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
           G   +   V    + D ++ L           FI  +   +              KAG+N
Sbjct: 202 GQTESYAYVPKELIEDEYLYLSESYSNKHNNIFITRNGSILKRQDAYKIITNIYKKAGIN 261

Query: 284 KS-AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           K+  H +R   A    +AG     +      K V+    Y K   +
Sbjct: 262 KTGIHLLRHTFAMKLVNAGVDLLHIKELLRHKNVNSTLVYAKSTQQ 307


>gi|213156271|ref|YP_002318691.1| phage integrase [Acinetobacter baumannii AB0057]
 gi|301346312|ref|ZP_07227053.1| phage integrase [Acinetobacter baumannii AB056]
 gi|301596472|ref|ZP_07241480.1| phage integrase [Acinetobacter baumannii AB059]
 gi|213055431|gb|ACJ40333.1| phage integrase [Acinetobacter baumannii AB0057]
          Length = 401

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 56/300 (18%), Positives = 107/300 (35%), Gaps = 34/300 (11%)

Query: 53  GSTPKREYINSPRK--KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDF 109
           G  PK E     +K  + +TLK +  ++ +S  +      S       F+  +  + GD 
Sbjct: 80  GQNPKVEERVKQQKYIEASTLKEVFDDWYES--YCIKKKTSAKDIRRSFEHHVFDEIGDL 137

Query: 110 DYRKITTKHIRSGVESRKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV----ERP 164
              +IT +   + +E      PS A + LT+ + + KWA ++E V +N    +    +  
Sbjct: 138 PIERITLQQWLAILEELAEEVPSIAERILTNAKQVLKWAKKREIVEVNVLSDIYAKEDLG 197

Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEG---SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221
             K  G R  T E++        E     + ++  +  L  G R  +  +A         
Sbjct: 198 IEKNRGKRVLTDEEITMVWKAIDESKALLKNKIFLKLCLMYGCRNGELRKALKSDFDLKR 257

Query: 222 FSIKT--------QKTGTIITVELPDGFMKLL--AMTPIGKETFFINND-----KQKMNA 266
                        +KTG  I   +     +L+  AM+    E F  N+D         + 
Sbjct: 258 KVWIVPVENNKVGKKTGREIVRPILPEMEELIVEAMSLNDSEYFLTNDDDVTPMGHGSSN 317

Query: 267 TQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATY-GWKTVDQAETY 322
           +  +   +        +    S H +R+ + T  +    T+ ++     G     +  TY
Sbjct: 318 SLAANVMERLRRHYNFHMPHWSLHDLRRTARTNFSA--FTSRDVAELMIGHVMPGEQGTY 375


>gi|198242564|ref|YP_002214507.1| prophage DLP12 integrase [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|197937080|gb|ACH74413.1| prophage DLP12 integrase [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|326622256|gb|EGE28601.1| prophage DLP12 integrase [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
          Length = 387

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 37/246 (15%), Positives = 85/246 (34%), Gaps = 31/246 (12%)

Query: 108 DFDYRKITTKHIRSGVESRKHTP---------SSAIQFLTSMRVLFKWA-VRQEYVAINP 157
           +   ++I  + + S     K  P         S+  + L  ++ + + A    +++   P
Sbjct: 112 NRKVKEIWQQKVESAKRKGKEAPVFEPKPVTTSTKAKHLALIKAILRAAERDWKWLEKAP 171

Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217
              ++ P  + + +R   +++ ++      E  +  + F     +GLR S+      Q +
Sbjct: 172 V--IKVPSVRNKRVRWLERDEAKRLIEECPEPLKSVVKFALA--TGLRRSNIINMEWQQI 227

Query: 218 QNN----IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF---- 269
                    + +  K+   I V L D   K+L         +   + K+ +         
Sbjct: 228 DMQRRVAWVNPEDSKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKEGIRPDGSKTPT 287

Query: 270 --------SIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
                      + A   +AG+ +   H +R   A+    +G     L    GW++++   
Sbjct: 288 VRKMRVDDQRAWNAACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVR 347

Query: 321 TYTKGA 326
            Y   A
Sbjct: 348 RYAHLA 353


>gi|59800962|ref|YP_207674.1| putative integrase [Neisseria gonorrhoeae FA 1090]
 gi|194098967|ref|YP_002002033.1| putative integrase [Neisseria gonorrhoeae NCCP11945]
 gi|239999244|ref|ZP_04719168.1| putative integrase [Neisseria gonorrhoeae 35/02]
 gi|240013841|ref|ZP_04720754.1| putative integrase [Neisseria gonorrhoeae DGI18]
 gi|240080411|ref|ZP_04724954.1| putative integrase [Neisseria gonorrhoeae FA19]
 gi|240113218|ref|ZP_04727708.1| putative integrase [Neisseria gonorrhoeae MS11]
 gi|240115977|ref|ZP_04730039.1| putative integrase [Neisseria gonorrhoeae PID18]
 gi|240123823|ref|ZP_04736779.1| putative integrase [Neisseria gonorrhoeae PID332]
 gi|254494006|ref|ZP_05107177.1| predicted protein [Neisseria gonorrhoeae 1291]
 gi|260440210|ref|ZP_05794026.1| putative integrase [Neisseria gonorrhoeae DGI2]
 gi|268595067|ref|ZP_06129234.1| integrase [Neisseria gonorrhoeae 35/02]
 gi|268596554|ref|ZP_06130721.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|268599298|ref|ZP_06133465.1| integrase [Neisseria gonorrhoeae MS11]
 gi|268601642|ref|ZP_06135809.1| integrase [Neisseria gonorrhoeae PID18]
 gi|268603984|ref|ZP_06138151.1| integrase [Neisseria gonorrhoeae PID1]
 gi|268682446|ref|ZP_06149308.1| integrase [Neisseria gonorrhoeae PID332]
 gi|268684604|ref|ZP_06151466.1| integrase [Neisseria gonorrhoeae SK-92-679]
 gi|291043502|ref|ZP_06569218.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|293398812|ref|ZP_06642980.1| integrase [Neisseria gonorrhoeae F62]
 gi|59717857|gb|AAW89262.1| putative integrase [Neisseria gonorrhoeae FA 1090]
 gi|193934257|gb|ACF30081.1| putative integrase [Neisseria gonorrhoeae NCCP11945]
 gi|226513046|gb|EEH62391.1| predicted protein [Neisseria gonorrhoeae 1291]
 gi|268548456|gb|EEZ43874.1| integrase [Neisseria gonorrhoeae 35/02]
 gi|268550342|gb|EEZ45361.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|268583429|gb|EEZ48105.1| integrase [Neisseria gonorrhoeae MS11]
 gi|268585773|gb|EEZ50449.1| integrase [Neisseria gonorrhoeae PID18]
 gi|268588115|gb|EEZ52791.1| integrase [Neisseria gonorrhoeae PID1]
 gi|268622730|gb|EEZ55130.1| integrase [Neisseria gonorrhoeae PID332]
 gi|268624888|gb|EEZ57288.1| integrase [Neisseria gonorrhoeae SK-92-679]
 gi|291011965|gb|EFE03954.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|291610814|gb|EFF39921.1| integrase [Neisseria gonorrhoeae F62]
 gi|317164530|gb|ADV08071.1| putative integrase [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 329

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 48/322 (14%), Positives = 98/322 (30%), Gaps = 39/322 (12%)

Query: 17  RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMS-ALTGSTPKREYINSPRKKPTT--LKW 73
           R+GK     R     R        +TF  A  + A       +         P       
Sbjct: 7   RNGKWRVQIRMKGVSR-------SATFERASDAKAWAARIESQIMDGIQGNAPRNTIFAD 59

Query: 74  LISEYRKSAHWGSLAVNSRISFE---SYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-- 128
           LI  Y        +  + R + E        +           +  +      + R    
Sbjct: 60  LIRRYL-----SEVTPSKRGAREESYRIGRALKTPLAKVRLADLRPQDFADWRDQRLQEV 114

Query: 129 TPSSAIQFLTSMRVLFKWAV-RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186
           +P+S  + LT++  + + A+     +  NP   + +PK+     R  T++++    +   
Sbjct: 115 SPTSVGRELTTLSAVCEHAMKEWGLLRENPVRKISKPKKSRARTRRPTEQEIADICAALL 174

Query: 187 ------SEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVE 236
                  + +  R+A   L    + +R  + C      +  +  I  +   K G    V 
Sbjct: 175 YRPNEKPKMAVQRVAVAVLFAIETAMRAGEICGLKWADVNMRRRIAHLPITKNGDSRDVP 234

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSAT 295
           L     +L+       +T+  + D     A    + F+      G+     H  R+ + T
Sbjct: 235 LSLRAAELIEQLRGIDDTWVFSLD-----AKSLDVLFRRARDNCGIQGLHFHDTRREALT 289

Query: 296 ISADAGATAHELMATYGWKTVD 317
             +        L    G + + 
Sbjct: 290 RLSKK-VPVEVLAKISGHRDLR 310


>gi|45441344|ref|NP_992883.1| integrase [Yersinia pestis biovar Microtus str. 91001]
 gi|45436204|gb|AAS61760.1| Integrase [Yersinia pestis biovar Microtus str. 91001]
          Length = 192

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 31/184 (16%), Positives = 56/184 (30%), Gaps = 11/184 (5%)

Query: 106 SGDFDYRKITTKHIRSGVESRKHT-PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP 164
            G+     I ++HIR  ++ R  T  + A +  T +  +++W   +  V  NPC   ++ 
Sbjct: 5   FGEMSPDNIRSEHIRKYMDKRGITSRTQANREKTFLSRVYRWGYERGIVKGNPCRGAKQF 64

Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
             K    R  T E+         +    R+A E       R +D        L+     I
Sbjct: 65  TEKAR-DRYITDEEYDAVYQVAPD--VVRVAMEIAYLCLARQADVLALRRDQLREPGIYI 121

Query: 225 KTQKTGTIITVELPDGFMKLLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKA 277
           K  KT         +     + +         I            +     F+  +    
Sbjct: 122 KQGKTAARQIKAWSERLRDAITLAESLPLKSGISSVYIIHQRTGLRYTRDGFNSKWHKAR 181

Query: 278 TKAG 281
             A 
Sbjct: 182 EVAK 185


>gi|497773|gb|AAA72427.1| integrase [Lactococcus lactis]
          Length = 379

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 45/262 (17%), Positives = 86/262 (32%), Gaps = 36/262 (13%)

Query: 99  FDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158
               I K   +   ++TT  I+S +       S+       +R+LFK+A    Y+  NP 
Sbjct: 100 LKGFIEKFSKYKVSEVTTADIQSYLMELDIANSTRKNRRIYIRILFKYAENIGYIDSNPA 159

Query: 159 LSVERPK-------RKTEGIRPWTKEDMQ---QFKSFWSEGSQPRLAFEFLLYSGLRCSD 208
             V  PK        +    +  +KE+M     F   + +  +  LA EF+  +G R  +
Sbjct: 160 DKVVLPKVRLEIETLERANEKFLSKEEMSSVLIFCKSYKKNIRYTLAMEFIFLTGCRFGE 219

Query: 209 SCRAGVQHLQ--------NNIFSIKTQK-----------TGTIITVELPDGFMKLLAMTP 249
                 Q +         ++    +  K            G+I T+ L +  ++++    
Sbjct: 220 FASIRYQDVDFKNRLLRIDHTLEYRVAKYDDRVIQTPKTVGSIRTISLSNRCLEIIDYFQ 279

Query: 250 I---GKETFFINNDKQKMNATQFSIWFKAKATK-AG--VNKSAHGVRKFSATISADAGAT 303
                 +  F+N          F  +      K  G       H +R    ++  + G  
Sbjct: 280 KNCLDDKFVFVNAVGGIFRQPVFYKFICDNCQKVLGNERKYGIHLLRHSHVSLLVELGVP 339

Query: 304 AHELMATYGWKTVDQA-ETYTK 324
              +M   G +        Y+ 
Sbjct: 340 IKAIMERVGHRDESITLRIYSH 361


>gi|126441327|ref|YP_001057152.1| phage integrase family site specific recombinase [Burkholderia
           pseudomallei 668]
 gi|126220820|gb|ABN84326.1| site-specific recombinase, phage integrase family [Burkholderia
           pseudomallei 668]
          Length = 409

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 37/301 (12%), Positives = 91/301 (30%), Gaps = 22/301 (7%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWL--ISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSG 107
           + G           R    +L  +   +EY         +     +     ++ I    G
Sbjct: 81  VAGGVSPVADARKDRGAVKSLDTIHEFAEYWIEQQMMGKSAEYLRTTRRALEKDIYPAIG 140

Query: 108 DFDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV--ER 163
                 +T   + +  +  K    P  A+     ++ ++++A+ ++ V  NP  ++    
Sbjct: 141 GKSVSDVTPGDVLAICDRIKKRGAPKMALSTRNILKRIYEYAIARQLVTSNPAQAIVARF 200

Query: 164 PKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220
              +    R  +  ++ +        S     +LA   L+ + +R S+   A       +
Sbjct: 201 VATQASRDRVLSPNEIGRVLRGVYTSSIRRPLKLAIHLLVLTMVRKSELIEARWDEFDLD 260

Query: 221 IFSIK----TQKTGTIITVELPDGFMKLLA---MTPIGKETFFINNDK--QKMNATQFSI 271
               +      K      V L    + +L     T    +  F ++    + +  +  + 
Sbjct: 261 ASIWRIPAERMKKDREHWVYLAPQAVAMLRELHATRTSHQYVFPSSRGADRPIAKSTLNQ 320

Query: 272 WFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG--ADRI 329
             +        +   H  R+ ++T   + G  +  +              Y +   AD  
Sbjct: 321 AVR-ALDMDVQHFVLHDFRRTASTHLHEMGQPSDAIEKALAHSIKGIKGVYNRAEYADER 379

Query: 330 R 330
           R
Sbjct: 380 R 380


>gi|108563083|ref|YP_627399.1| integrase-recombinase protein [Helicobacter pylori HPAG1]
 gi|107836856|gb|ABF84725.1| integrase-recombinase protein [Helicobacter pylori HPAG1]
          Length = 356

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 27/191 (14%), Positives = 66/191 (34%), Gaps = 22/191 (11%)

Query: 167 KTEGIRPWTKEDMQQFKS-------FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-- 217
             +       E++++F              ++ RL  + ++++G+R +++ +  ++    
Sbjct: 162 GNKLPTHLNNEELEKFLEGIDKIEMSAKVRARNRLLIKIIVFTGMRSNEALQLKIKDFTL 221

Query: 218 QNNIFSIKTQKTGTIITVELPDG------FMKLLAMT---PIGKETFFINNDKQKMNATQ 268
           +N  ++I  +  G      +           + L      P+  +  F N     +    
Sbjct: 222 ENGCYTILIKGKGDKYRAVMLKAFHIESLLKEWLTERELYPVKNDLLFCNQKGSALTQAY 281

Query: 269 FSIWFKAKATKAGVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
                +     AG+ +    AH +R   AT+          +    G  +++ +  YT  
Sbjct: 282 LYKQVERIINFAGLRREKNGAHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTH- 340

Query: 326 ADRIRLGIKNS 336
            D+ RL    S
Sbjct: 341 FDKQRLEEAAS 351


>gi|294617321|ref|ZP_06696961.1| transposase B [Enterococcus faecium E1679]
 gi|291596430|gb|EFF27683.1| transposase B [Enterococcus faecium E1679]
          Length = 630

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 42/289 (14%), Positives = 83/289 (28%), Gaps = 33/289 (11%)

Query: 71  LKWLISEY----RKSAHWGSLAVNSRISFE--SYFDQIIRKSGDFD-YRKITTKHIRSGV 123
            K L+  Y         +  ++  ++   E  ++ D   ++        ++  +   S +
Sbjct: 218 FKQLVKRYCKLRLNMDSFSYVSDIAQRLKEFFNFLDMKFKQVQRVHQLTRVEIEAYLSEL 277

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV----ERPKRKTEGIRPWTKEDM 179
                 PS+    ++ +  LF   +R E+    P   +    + PK      R   +  +
Sbjct: 278 NMMGIKPSTITGRISILEGLFSTLLRLEW-DDVPSKILIYSEDYPKIPRAKPRFIDEFVL 336

Query: 180 QQFKSFWS-EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTII 233
           +Q  S               +   G+R S+ C      L  +            K     
Sbjct: 337 EQLNSHLDKLPEYIATMTMIVQECGMRISELCTLKKGCLLEDKDGDFFLKYYQWKMKKEH 396

Query: 234 TVELPDGFMKLLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKS 285
            V +      L+ +            E  F   D   +    F       A +  + +KS
Sbjct: 397 IVPISKEVALLIKVREDKVSEEFPDSEYLFPRKDGSPLKQETFRGELNKLAYEQNIVDKS 456

Query: 286 -------AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
                  AH  R    T   + G   H +    G ++ +    Y    D
Sbjct: 457 GEIYRFHAHAFRHTVGTRMINNGMPQHIVQKFLGHESPEMTSRYAHIFD 505


>gi|240948184|ref|ZP_04752584.1| integrase [Actinobacillus minor NM305]
 gi|240297477|gb|EER47991.1| integrase [Actinobacillus minor NM305]
          Length = 373

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 45/339 (13%), Positives = 103/339 (30%), Gaps = 29/339 (8%)

Query: 3   PSLRLPPFVTKERTRHGKIIYYFRKG--HGRRIRLPYPHESTF-IPAYMSALTGSTPKRE 59
           P LRL     + +T   K+ +YF KG  H R IR          I    S +     + E
Sbjct: 32  PHLRL----YRYKT---KMTWYF-KGCFHYRDIREKLGSYPQLKIADAKSLVLERLSQIE 83

Query: 60  YINSPRKKPTTLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH 118
             +   K+  T+     E Y  S        N           +++   +      + + 
Sbjct: 84  ANSYVHKRKMTVGQFFDEVYIVSVQAHQR--NYISELSKCRLYLLKPYSERTLLSFSHQE 141

Query: 119 IRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
           +         K + ++  + +   R  F+ AV    +  +P   +++        +   +
Sbjct: 142 LSRYFHRLHEKLSSATTNRIIAIYRKFFRLAVENGLLNKSPAEYIKQYPECNIRKKVLNE 201

Query: 177 EDMQQFKSFW-SEGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTII 233
              +QF +      ++  LA    L +G+R  +            +   ++   K G+  
Sbjct: 202 AQCKQFLTLCQKRNTKSALALALSLLTGMRIGEVISLTSDVIDFADKSITLTHTKNGSSH 261

Query: 234 TVELPDG----FMKLLAMTPIGKETFFINND---KQKMNATQFSIWFKAKATKAGVNKSA 286
            + + D      +  +   P+     F ++                   +    G     
Sbjct: 262 HLPITDKVYDVLICCMKANPLSH-YLFPSDRTVTGHISPPKGLFKALMGEMQLEGF--RI 318

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           H +R+   ++  +       +      ++++    Y   
Sbjct: 319 HDLRRSFGSLLLEKTDNLQLVAQALNHRSLNTTRRYAHY 357


>gi|309776162|ref|ZP_07671153.1| integrase [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916113|gb|EFP61862.1| integrase [Erysipelotrichaceae bacterium 3_1_53]
          Length = 286

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 35/247 (14%), Positives = 78/247 (31%), Gaps = 13/247 (5%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTSMRVL 143
             +  +   +     Q  +   + D + IT + + +   S   K+  SS    L ++  L
Sbjct: 22  ERSKATIEKYMRDVMQFYKYMPEND-KAITKEKLVAYKNSLSEKYKVSSINSMLVALNGL 80

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEF--LLY 201
             +              ++R     E  R  TK++ ++      +    RL      +  
Sbjct: 81  LDYLKLGNLKLK--LHKIQR-SVFYEEERELTKDEYKRLLDTALKRDDKRLYMLLQTICG 137

Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP--IGKETFFINN 259
           +G+R S+     V+ ++     ++ +     + +      +         I     FI  
Sbjct: 138 TGIRVSEHKYITVEAVKEGKAVVRNKGKTRTVFIPKKLKKLLKDYCKQENISTGAVFITK 197

Query: 260 DKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGATAHELMATYGWKTV 316
           + + M+ +      K    +A V+      H +R   A            L    G  ++
Sbjct: 198 NGRPMDRSNIWQAMKKLCQEARVDDKKVFPHNLRHLFALTFYRLQKDVVRLADLLGHASI 257

Query: 317 DQAETYT 323
           +    YT
Sbjct: 258 ETTRIYT 264


>gi|291335907|gb|ADD95502.1| phage related integrase [uncultured phage MedDCM-OCT-S08-C41]
          Length = 282

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 77/225 (34%), Gaps = 18/225 (8%)

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM-QQ 181
           +E    +P +  + ++S+  +     R++ +A  P    ER K        ++ + + + 
Sbjct: 62  LEKEGKSPGTINRCISSVSTVLHHCARRKLIAK-P-DVFERKKEAPPREFFYSIDQLGEM 119

Query: 182 FKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVEL 237
            K+  +    P L     F +++G+R  +  R     +  N     +   K  T  TV +
Sbjct: 120 VKAANTIFRMPELGDIILFAVHTGMRQGEVLRLVTSDIDFNFNVIHVHKTKNNTTRTVPI 179

Query: 238 PDGFMKLLA---MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKF 292
                 +L       I    F+   DK            +      G++     H +R  
Sbjct: 180 NSQIKPMLERRVADAIDDHVFWEYQDK-----DTLLRQLRKVTAYIGLDENYLFHTLRHT 234

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNS 336
             TI A  G   H++    G   +     Y K  A+  +  I + 
Sbjct: 235 FCTILAGKGTPLHQVAEIMGHNDIKTTLRYAKVSAEAKQTAIHSM 279


>gi|291084894|ref|YP_003495177.1| gp36 [Mycobacterium phage Ardmore]
 gi|262262730|gb|ACY39918.1| gp36 [Mycobacterium phage Ardmore]
          Length = 372

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 50/284 (17%), Positives = 100/284 (35%), Gaps = 42/284 (14%)

Query: 91  SRISFESYF-DQIIRKSGDFDYRKITTKHIRSG---------VESRKHTPSSAIQFLTSM 140
           +   +E Y  + I    GD    K++ + I             +   H P +       +
Sbjct: 92  TIDKYEQYLANDIEPNLGDIPLSKLSEEDIARWVKVMETTGGRDGNGHAPKTLRNKYGFL 151

Query: 141 RVLFKWAVRQEYVAINPCLSVERPK---RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE 197
                 AV + Y++ NP      P+      + IR  T  +  + +   +     ++  +
Sbjct: 152 SGALNAAVPR-YLSTNPAAGRRLPRGDAEDDDEIRMLTHAEFDRLRD--AVTPHWKMMVQ 208

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ---------------KTG-TIITVELPDGF 241
           F++ +GLR  +      +H+     +I+ +               KT  +  TV++P   
Sbjct: 209 FMVSTGLRWGEVSALQPKHVDLETSTIRVRQAWKYSSAGYVLGPPKTKRSRRTVDVP--- 265

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIW-FKAKATKAGV--NKSAHGVRKFSATISA 298
            +LL    +  E  F+N D   +    F    +     KAG+    + H +R   A+   
Sbjct: 266 ARLLERLDLSNEFVFVNTDGGPVRYPGFLRRVWNPAVEKAGLVPRPTPHDLRHTYASWQL 325

Query: 299 DAGATAHELMATYGWKTVD-QAETYTKGADR--IRLGIKNSRRI 339
             G     +    G +++    +TYT   DR   R+  +    +
Sbjct: 326 TGGTPVTIVSRQLGHESIQITVDTYT-DVDRTSSRVAAEFMDGL 368


>gi|251779512|ref|ZP_04822432.1| phage integrase family protein, putative [Clostridium botulinum E1
           str. 'BoNT E Beluga']
 gi|243083827|gb|EES49717.1| phage integrase family protein, putative [Clostridium botulinum E1
           str. 'BoNT E Beluga']
          Length = 292

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 28/284 (9%), Positives = 99/284 (34%), Gaps = 27/284 (9%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY------RKITTKHIRSGVESRK 127
           ++ E++        ++N+  S+       ++  G  +       ++      ++ +    
Sbjct: 4   IVEEFKTHIMEDGKSINTIQSYVGDVSAFLKYLGTMNVEFDGVLKRFYITSYKNYLIDNS 63

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK-----TEGIRPWTKEDMQQF 182
           + P++  + + S+     + + + Y+  N  + +++ + K        +  ++   +++ 
Sbjct: 64  YEPATINKKVNSIGAFNNFLIWKGYMQEN-VIDLKKDRVKIAVGSEHQVEVYSDNQLERL 122

Query: 183 K----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVEL 237
           +    +      + ++  + L+++G+R S+ C   ++++   +  IK   K G +  V  
Sbjct: 123 QFYIQNQKKVSIRDKMIIQLLMFTGVRVSELCDIKLKNIDFLLSQIKIIGKGGKVREVPA 182

Query: 238 P-------DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG--VNKSAHG 288
                   + ++      P     F I   + ++     +   +    +    +    H 
Sbjct: 183 KFEAMDTIEEYISERNNNPYKDSEFLILGQRGEIQRDAVNTLLEKHTVRGNFEMKLKPHT 242

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAET-YTKGADRIRL 331
            R    T     G     +    G  +++     Y   +   ++
Sbjct: 243 FRHTFCTRLVAKGIPITTVSKLAGHSSIETTAKFYINSSKEEKM 286


>gi|126664437|ref|ZP_01735421.1| probable integrase/recombinase [Marinobacter sp. ELB17]
 gi|126668630|ref|ZP_01739582.1| probable integrase/recombinase [Marinobacter sp. ELB17]
 gi|126626889|gb|EAZ97534.1| probable integrase/recombinase [Marinobacter sp. ELB17]
 gi|126630763|gb|EBA01377.1| probable integrase/recombinase [Marinobacter sp. ELB17]
          Length = 403

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 55/320 (17%), Positives = 108/320 (33%), Gaps = 34/320 (10%)

Query: 26  RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG 85
           R  +GR +RL       F    ++     + K+        +      L++ + K     
Sbjct: 72  RSDYGRLVRL-------FDGYLLTGRVDLSTKKRGGGGDGPQSEDFTALLASWSKEMEQR 124

Query: 86  SLAVNSRISF-ESYFDQII--RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF--LTSM 140
            LAV +R ++  +  D ++    +G           I   +ES +   +    +  +T+ 
Sbjct: 125 GLAVATRSAYGHAACDYLLYLEGTGLTSLAMADGASILRFLESLRGRWAETAMWTVVTNF 184

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW--TKEDMQQFKS--FWSEGSQPRLAF 196
           R    +  R + +      +V+R      GI P     E++    +       ++     
Sbjct: 185 RPFLNFTRRGDLLNALKMANVKRH----HGIVPLLGNDEELAVVHACTHGEVSARDASIV 240

Query: 197 EFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLA------MT 248
              L +GLR  D     ++ +    +   I  +KTG  +T+ L       LA       T
Sbjct: 241 LLTLVTGLRACDLIALRLKDIDWRGSTIGIVQRKTGNPLTLPLLPVIAGKLAKYVLNERT 300

Query: 249 PIGKETFFINNDKQKMNATQFSIWF---KAKATKAGVNKSAHG---VRKFSATISADAGA 302
               +  F+            S  +   +     AGV+++  G   +R  +A+    AG 
Sbjct: 301 NSKDDPLFLRMLAPHTELADHSSIYEVTRKVFAAAGVDRTKVGTRLLRHNAASKLLRAGT 360

Query: 303 TAHELMATYGWKTVDQAETY 322
               + A  G  + D    Y
Sbjct: 361 PLPTISAVLGHSSPDSTNVY 380


>gi|83956466|ref|ZP_00964886.1| putative integrase/recombinase [Sulfitobacter sp. NAS-14.1]
 gi|83839321|gb|EAP78509.1| putative integrase/recombinase [Sulfitobacter sp. NAS-14.1]
          Length = 329

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 43/273 (15%), Positives = 81/273 (29%), Gaps = 27/273 (9%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
              Y  S          R+       QI     D        +HI    +++     S  
Sbjct: 27  CDAYAYSFQLLVTFAAGRLRKRPCLLQIEDI--DVPTILAFLEHIEQVRDNKA---RSRN 81

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSV---ERPKRKTEGIRPWTKEDMQQFKS----FWS 187
             L +++  F++   +    ++  L V      K     +   ++ ++Q          +
Sbjct: 82  ARLAAVKSFFRYLEHRVPAVLDQALRVHAIPMKKIDQGLVASLSRAEVQALLDAPDRRTA 141

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI---FSIKTQKTGTIITVELPD---GF 241
            G + R         GLR S+    G+            I  +     +     +     
Sbjct: 142 SGIRDRAMLHLAFSGGLRVSELVGVGLDQFDGRSPASIHIIGKGRRERVLPLWQETAAAM 201

Query: 242 MKLLAMTP-IGKETFFINNDKQKMNATQFSIWFKAKA--------TKAGVNKSAHGVRKF 292
              +A+ P +G    F+NN  + M  + F    K  A        T A  + + H +R  
Sbjct: 202 RAWIAIRPEVGDTALFLNNADRMMTRSGFEYILKKHAAAAAGIAPTLATKSITPHVLRHS 261

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKG 325
            A     A     ++    G  T+   E Y + 
Sbjct: 262 CAMHMLQATRDIRKVALWLGHATLQSTEIYLRA 294


>gi|330825997|ref|YP_004389300.1| integrase family protein [Alicycliphilus denitrificans K601]
 gi|329311369|gb|AEB85784.1| integrase family protein [Alicycliphilus denitrificans K601]
          Length = 414

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 51/362 (14%), Positives = 95/362 (26%), Gaps = 49/362 (13%)

Query: 10  FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
           F+   R R G+   Y   G    +      +         A        +      ++  
Sbjct: 42  FLVAYRLRDGRKNRYV-IGRTPPLTPAQARDEAKKVLGDVARGIDPNDDKRQQRREERKP 100

Query: 70  TLKWLISEYRKSAHWGSL--AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127
           TL+  I E+        L  A  +       F + + K  D           +S      
Sbjct: 101 TLEAFIDEHYAPWALAHLGTAEKTLARMRVAFKEHLDKRLD-SLTAWQFDKWKSERLKSG 159

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR-KTEGIRPWTKEDMQQFKSFW 186
             P+S  + L S+R     AV  E +  +P   V++ K  +   +R  +  +  + +   
Sbjct: 160 LKPTSVNRELASLRSALTKAVEWELIPEHPLRKVKQAKVDEDHRVRFLSDAEETRLREVL 219

Query: 187 SEG--------------------------------SQPRLAFEFLLYSGLRCSDSCRAGV 214
                                                 R      + +GLR  +  +   
Sbjct: 220 DAREANARAARVRHNEWRMQRGHEARPLIAEGEFIDHIRPMILVTINTGLRRGELFKLKR 279

Query: 215 QHLQNNIFSIKTQ----KTGTIITVELPDGFMKLLAM-----TPIGKETFFINNDKQKMN 265
             +      +K +    K+G    V L +    +LA          +E  F   D   + 
Sbjct: 280 SDIDMEKRMLKVRAAAAKSGKSRFVPLNEEAAAMLARWMDQHPGEDEELVFPGKDGAPLT 339

Query: 266 -ATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
                             +   H +R   A+    AG   + +    G   +     Y  
Sbjct: 340 NVDSAWGSIVKAVKLQDFH--WHDMRHHFASRLVMAGVDLNTVRELLGHADLKMTLRYAH 397

Query: 325 GA 326
            A
Sbjct: 398 LA 399


>gi|323138766|ref|ZP_08073831.1| integrase family protein [Methylocystis sp. ATCC 49242]
 gi|322396013|gb|EFX98549.1| integrase family protein [Methylocystis sp. ATCC 49242]
          Length = 409

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 46/293 (15%), Positives = 90/293 (30%), Gaps = 30/293 (10%)

Query: 52  TGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY 111
            G+ P+   +  P      + W   +         LA  +  ++ S     +   G+ D 
Sbjct: 108 RGALPRVPVLPGPPIVGEYMVWAREQ-------QGLAETTLATYASAIIPFVAALGE-DP 159

Query: 112 RKITTKHIRSGVESRKHTPSSA--IQFLTSMRVLFKWAVRQEYVAINPCLSVERPK---- 165
                  IR  +  R    S A       ++R   ++ +        P      P+    
Sbjct: 160 AAYDAAAIRGYMLGRAGAVSVARLNGIGVAIRAFLRFLIAMGRCP--PGRDRAMPQAAEW 217

Query: 166 RKTEGIRPWTKEDMQQFKSFWS--EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223
           R     R   ++D+ +  +        + R     L+  G+R S+  R G   +     S
Sbjct: 218 RLASIPRFLPEDDIARIIAACESERRLRDRAIILLLVRLGMRASEVARLGFDDIDWRQGS 277

Query: 224 IKTQKTGTIITV-----ELPDGFMKLL--AMTPIGKETFFINNDK--QKMNATQFSIWFK 274
           I+    G    +     E+ D  +  +  A         F+      + ++        +
Sbjct: 278 IRLHGKGRREELLPLSQEVGDALIAYIECARPAFAARALFLTESAPLRPIDRGTIKCVVR 337

Query: 275 AKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
               +AGV    K AH +R  +AT     G +   +      ++      Y K
Sbjct: 338 RALERAGVESRFKGAHVLRHSAATSMLRHGVSLAGVSIVLRHRSPAMTVHYAK 390


>gi|323947708|gb|EGB43711.1| phage integrase [Escherichia coli H120]
          Length = 409

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 57/367 (15%), Positives = 122/367 (33%), Gaps = 38/367 (10%)

Query: 16  TRH---GKIIYYF--RKGHGRRI---RLPYPHESTFI-----------PAYMSALTGSTP 56
            RH   G + +YF  R G GR++   RL   +                 A+++       
Sbjct: 35  VRHSTSGLLTWYFTYRAGAGRQVSPERLKLGNYPDLSLKAAREKAAQCRAWLAEGKNPRH 94

Query: 57  KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT 116
           +  Y      KP T+   IS Y    H     V+         + +I+  G+    K   
Sbjct: 95  ELNYSIQEALKPVTVGDAIS-YWLEMHVKENRVDYVCLKSRLNNHVIQHIGNMPLDKCEL 153

Query: 117 KHIRSGVES-RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS---VERPKRKTEGIR 172
           +H  +  +  RK +P ++   + + +   K+  ++ Y   N       V+  K+     R
Sbjct: 154 RHWLACFDRIRKKSPVTSGHMMQACKQALKFCRKRRYAVSNVLDDLNVVDVGKKPGISER 213

Query: 173 PWTKEDM-QQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT--- 226
             + +++ +  ++   +   P        L+  G R  +   + ++              
Sbjct: 214 VLSNKELGELLQALDKKIFPPYYSALIRLLIVFGCRTGELRLSEIREWDFKEMLWTVPKE 273

Query: 227 -QKTGTIITVELPDGFMKLLAMTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGVN 283
             KT   I   +P+  +  +             +   KQ+ + +Q+  +   K      +
Sbjct: 274 HSKTKVAIFRPIPESILPFVTQLVEQNRHTGLLLGELKQEASVSQYGRFMHKKLNH--PH 331

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY--TKGADRIRLGIKN-SRRIS 340
            S H +R+   T+  D G   H +      +       Y  ++  D  R  +   + R+ 
Sbjct: 332 WSLHDIRRTFTTMLNDLGVDPHIVEQLTAHQMPGMQRVYNHSRYLDAKRNALDMWTERLE 391

Query: 341 SVVDSDD 347
            +  +  
Sbjct: 392 ILAGTHK 398


>gi|313886232|ref|ZP_07819961.1| site-specific recombinase, phage integrase family [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|312924303|gb|EFR35083.1| site-specific recombinase, phage integrase family [Porphyromonas
           asaccharolytica PR426713P-I]
          Length = 423

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 35/216 (16%), Positives = 75/216 (34%), Gaps = 20/216 (9%)

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQQFKSF 185
              P++A + + + + +     +   +  +P ++     +    G    T E++ Q  + 
Sbjct: 188 GQNPNTATKTMKTFKTVVILGQKLGVLHHDPFVNFRFHLEPVNRGF--LTDEEVLQIVNK 245

Query: 186 W---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELP 238
                     R  F F  ++GL   D       ++           K QKT     V L 
Sbjct: 246 ELNIPRLELVRDIFIFSCFTGLAYIDVANLTPDNIVMLGGKEWIMTKRQKTSVETNVLLL 305

Query: 239 DGFMKLLAMTPIGKETFFINNDKQ--KMNATQFSIWF-KAKATKAGVNK--SAHGVRKFS 293
           D   +++  +    +T+    D +   + + Q +  + K  A   G+ K  + H  R   
Sbjct: 306 DIPKRII--SKYSHQTY---RDGKLFPILSNQKTNSYLKEIADICGIKKNLTFHLARHTF 360

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           AT+S   G     +    G   +   + Y +  ++ 
Sbjct: 361 ATMSLSKGVPIESVSKMLGHTNIRTTQIYARITNKK 396


>gi|331681924|ref|ZP_08382557.1| prophage DLP12 integrase (Prophage QSR' integrase) [Escherichia
           coli H299]
 gi|331081126|gb|EGI52291.1| prophage DLP12 integrase (Prophage QSR' integrase) [Escherichia
           coli H299]
          Length = 387

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 42/265 (15%), Positives = 95/265 (35%), Gaps = 35/265 (13%)

Query: 112 RKITTKHIRSGVESRKHTP---------SSAIQFLTSMRVLFKWA-VRQEYVAINPCLSV 161
           ++I  + +++ +   K  P          +  + L  ++ + + A    +++   P   +
Sbjct: 116 KEIWKQKVQAAIRKGKEPPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPV--I 173

Query: 162 ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN- 220
           + P  + + +R   KE+ ++      E  +  + F     +GLR S+      Q +    
Sbjct: 174 KIPAVRNKRVRWLEKEEAKRLIDECPEPLKSVVKFALA--TGLRKSNIINLEWQQIDMQR 231

Query: 221 ---IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK-------------QKM 264
                + +  K+   I V L D   K+L         +   + K             +KM
Sbjct: 232 RVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKM 291

Query: 265 NATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
                + W      +AG+ +   H +R   A+    +G     L    GW++++    Y 
Sbjct: 292 RIDSKTSWLS-ACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYA 350

Query: 324 KGADRIRLGIKNSRRISSVVDSDDP 348
             A       +++R+I  +   + P
Sbjct: 351 HLAPNHL--TEHARKIDDIFGDNVP 373


>gi|289671193|ref|ZP_06492268.1| putative integrase [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 400

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 44/305 (14%), Positives = 100/305 (32%), Gaps = 26/305 (8%)

Query: 49  SALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSG 107
           +A      ++    +  K   T      ++ +      +A ++R    S +++ +  K  
Sbjct: 77  AAGKSPAKEKARNKARVKDAETFGAWAEKWLRGYQ---MADSTRDMRRSIYERELKPKFS 133

Query: 108 DFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165
           +    +IT + +R+  ++   +  P++A+     M  +F+WA+ +     NP   V    
Sbjct: 134 NQKLVEITHEDLRALTDAIVERGAPATAVHAREVMLQVFRWAIERGQRVENPAELVRPTT 193

Query: 166 RKT--EGIRPWTKEDMQQFKSFWS-EGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQNN 220
                   R  T +++     +    G+ P  R A + LL + +R S+   A    +  +
Sbjct: 194 IAKFEPRDRALTPDEIGLMYQYMERIGTTPSIRAAAKLLLLTMVRKSELTNATWNEINFS 253

Query: 221 IFSIK----TQKTGTIITVELPDGFMKLLAMTPI---GKETFFINNDKQ--KMNATQFSI 271
                      K      V L    + +         G +    +       M++   + 
Sbjct: 254 EALWTIPKERMKRRNPHLVFLSRQALDIFIALKTFAGGSDYVLPSRYDSDLPMSSATLNQ 313

Query: 272 WFKAKATKAGVNKS------AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
                   A            H +R+ ++T+  +AG     +      +       Y K 
Sbjct: 314 VLTLTYRLAQKEGKSLAKFGPHDLRRTASTLLHEAGYNTDWIEKCLAHEQKGVRAVYNKA 373

Query: 326 ADRIR 330
             R +
Sbjct: 374 EYREQ 378


>gi|197104884|ref|YP_002130261.1| integrase/recombinase, phage integrase [Phenylobacterium zucineum
           HLK1]
 gi|196478304|gb|ACG77832.1| integrase/recombinase, phage integrase [Phenylobacterium zucineum
           HLK1]
          Length = 394

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 54/377 (14%), Positives = 120/377 (31%), Gaps = 42/377 (11%)

Query: 10  FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFI----------PAYMSALTGSTPKRE 59
           +V    +      Y +R    R       +  + +           A  +   G +P +E
Sbjct: 2   YVHVTTSGSITFRYDYRLNGRRETLTIGKYGPSGLSLARAREKCLDARRAVAEGLSPAQE 61

Query: 60  YINSPRK--KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITT 116
                R+  +  +       + K A    +A ++R    S F++ ++    +    +IT 
Sbjct: 62  KQREKRRVLEAKSFGEFGERWFKEAP---MADSTRAMRRSIFERDLLPAFRNRLLSEITP 118

Query: 117 KHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT--EGIR 172
             +R+     K    P++AI     ++ ++ +A+       NP   V      T     R
Sbjct: 119 DDLRALCAKIKGRGAPATAIHVRDILKQIYGFAILHGEKIRNPADEVGPASIATFVAKDR 178

Query: 173 PWTKEDMQQFKS---FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIK 225
             +  +++               RL  + +L + +R S+   A    +           +
Sbjct: 179 ALSPTEIRIMLKQLEHVPTLPTIRLGLKLILLTMVRKSELQDATWDEVDFENAVWSIPKE 238

Query: 226 TQKTGTIITVELPDGFMKLLAMTPI--GKETFFINNDKQ---KMNATQF---SIWFKAKA 277
             K      V L +  + +L       G   F + +       M+   F   +     +A
Sbjct: 239 RMKRSKAHNVYLSEQSLDILIALKTCAGNSRFLLPSRYDADAPMSRATFNRITTAVAERA 298

Query: 278 TKAGVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGA---DRIR 330
            K G+     + H +R+  +T+  + G     +      +    +   Y K      R  
Sbjct: 299 KKEGLPLEPFTVHDLRRTGSTLLNELGFNRDWIEKALAHEDSRSSRGVYNKAEYEPQRRH 358

Query: 331 LGIKNSRRISSVVDSDD 347
           +  + +  + + VD   
Sbjct: 359 MLQEWADMVDAWVDGRK 375


>gi|186474496|ref|YP_001863467.1| integrase family protein [Burkholderia phymatum STM815]
 gi|184198455|gb|ACC76417.1| integrase family protein [Burkholderia phymatum STM815]
          Length = 335

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 45/274 (16%), Positives = 84/274 (30%), Gaps = 38/274 (13%)

Query: 85  GSLAVNSRISFE---SYFDQIIRKSGDFDYRKITTKHIRSGV---------ESRKHTPSS 132
            +++  +  S+            +       K+      +G+           R +T  S
Sbjct: 26  RNVSPRTVASYRDTFRLLFHFAEQHVGRPPHKLRLTDFNAGLILDFLNHLEVGRHNTIRS 85

Query: 133 AIQFLTSMRVLFKWAVRQE-----YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
               L ++R    +A  QE      +     + ++R  R   G    ++E+MQ   +  +
Sbjct: 86  RNARLAAVRSFAHYAALQEPSALPVLQGVLAIPMKRFDRPMVGF--LSREEMQCILAAPN 143

Query: 188 E----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS--IKTQKTGTIITVELPDGF 241
                G + +     L  +G R S+     V+ +     S  +   K     T+ L +  
Sbjct: 144 ADTWCGKRDQAMLATLYNTGARVSELTSMRVKDVTLGRGSCVLLHGKGRKERTLPLWNDT 203

Query: 242 MKLLAMT-----PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--------SAHG 288
            KLL        P  ++  F N    +M     +   K  A  A            S H 
Sbjct: 204 AKLLRRWLRQINPDPQQWLFPNRSGGQMTRAGVTDRLKLAAATASEGYPPLKARHVSPHV 263

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           VR  +A      G     +    G ++      Y
Sbjct: 264 VRHATAMHMLQGGVDLSLIALWLGHESPATTHMY 297


>gi|227519140|ref|ZP_03949189.1| phage integrase family site specific recombinase [Enterococcus
           faecalis TX0104]
 gi|227073417|gb|EEI11380.1| phage integrase family site specific recombinase [Enterococcus
           faecalis TX0104]
          Length = 389

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 43/299 (14%), Positives = 91/299 (30%), Gaps = 46/299 (15%)

Query: 85  GSLAVNSRISFESYF-DQIIRKS--GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS-- 139
             +A N+ + ++ Y  ++I +          ++   H++   +   +   +A   +    
Sbjct: 86  KQVAFNTYVGYKHYVHNRIYKFFYPKKIKLNRLKPYHLQDFYQYMLNDDCTANTVIHYHA 145

Query: 140 -MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEF 198
            +R   + AV  E ++ N    V +PK+K    + + + ++ +     SE  +  L    
Sbjct: 146 FIRKALQEAVITELISTNVADKVRKPKKKQFVSQVYNQHEILKLLDILSE-EKLYLVVLL 204

Query: 199 LLYSGLRCSDSCRAGVQHLQ-------------------NNIFSIKTQKTGTI-ITVELP 238
             + GLR S+        +                    + +      K  +   T+ L 
Sbjct: 205 TAFYGLRRSEVLGLKWSAIDFFNKKIVINHVIIENPENMSQLIKKDQTKNSSSYRTLPLV 264

Query: 239 DGFMKLLAMTPI----------------GKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
           +   + L                       E  F   D + M     +        K G+
Sbjct: 265 ETIERALVNQAKWQQDNRILLGDDYILEDNEYVFTMEDGRLMKPQYVTHRLSKLIKKNGL 324

Query: 283 NK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTK-GADRIRLGIKNSRR 338
            K   H +R  +A+I  D+G     +    G  +       YT   A       +    
Sbjct: 325 KKIRFHDLRHSNASIMLDSGQNMKSIQEWLGHASYSTTANLYTHLTAGVKDRAAEALEN 383


>gi|29349430|ref|NP_812933.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
 gi|29341339|gb|AAO79127.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
          Length = 409

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 36/237 (15%), Positives = 77/237 (32%), Gaps = 20/237 (8%)

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
             E + +   +    L  ++ + + A +  Y           PK+     R  ++E  ++
Sbjct: 174 ATEEKGYAIDTVRHHLAILKKICRLAYKDGYADRIHFQHFTLPKKTETTPRALSRESFEK 233

Query: 182 FK-----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGT 231
            +     ++       R  F F  Y+G+  +D      ++L  +         + +K   
Sbjct: 234 IRDVEIPAYRKSHILARDMFLFGCYTGVCYADVVSITHENLYTDEDGALWLKYRRKKNEL 293

Query: 232 IITVELPDGFMKLLAMTPI-GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HG 288
              V+L    + L+       ++T F        +        KA A  AG+      H 
Sbjct: 294 RACVKLLPEAIALIEKYHSEDRDTLFPLL---HWS--NLRRHMKALAALAGIKDDLCYHQ 348

Query: 289 VRKFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
            R   A++   +AG     +    G   +   + Y +     +L     + I +  D
Sbjct: 349 ARHSFASLITLEAGVPIETISRMLGHSDISTTQVYAR-VSPKKLFEDMDKFIEATKD 404


>gi|313886120|ref|ZP_07819854.1| site-specific recombinase, phage integrase family [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|312924423|gb|EFR35198.1| site-specific recombinase, phage integrase family [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|332177795|gb|AEE13485.1| integrase family protein [Porphyromonas asaccharolytica DSM 20707]
          Length = 423

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 35/216 (16%), Positives = 75/216 (34%), Gaps = 20/216 (9%)

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQQFKSF 185
              P++A + + + + +     +   +  +P ++     +    G    T E++ Q  + 
Sbjct: 188 GQNPNTATKTMKTFKTIVILGQKLGVLHHDPFVNFRFHLEPVNRGF--LTDEEVLQIVNK 245

Query: 186 W---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELP 238
                     R  F F  ++GL   D       ++           K QKT     V L 
Sbjct: 246 ELNIPRLELVRDIFIFSCFTGLAYIDVANLTPDNIVMLGGKEWIMTKRQKTSVETNVLLL 305

Query: 239 DGFMKLLAMTPIGKETFFINNDKQ--KMNATQFSIWF-KAKATKAGVNK--SAHGVRKFS 293
           D   +++  +    +T+    D +   + + Q +  + K  A   G+ K  + H  R   
Sbjct: 306 DIPKRII--SKYSHQTY---RDGKLFPILSNQKTNSYLKEIADICGIKKNLTFHLARHTF 360

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           AT+S   G     +    G   +   + Y +  ++ 
Sbjct: 361 ATMSLSKGVPIESVSKMLGHTNIRTTQIYARITNKK 396


>gi|228471367|ref|ZP_04056168.1| integrase [Porphyromonas uenonis 60-3]
 gi|228306868|gb|EEK15981.1| integrase [Porphyromonas uenonis 60-3]
          Length = 423

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 35/216 (16%), Positives = 75/216 (34%), Gaps = 20/216 (9%)

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQQFKSF 185
              P++A + + + + +     +   +  +P ++     +    G    T E++ Q  + 
Sbjct: 188 GQNPNTATKTMKTFKTIVILGQKLGVLHHDPFVNFRFHLEPVNRGF--LTDEEVLQIVNK 245

Query: 186 W---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELP 238
                     R  F F  ++GL   D       ++           K QKT     V L 
Sbjct: 246 ELNIPRLELVRDIFIFSCFTGLAYIDVANLTPDNIVMLGGKEWIMTKRQKTSVETNVLLL 305

Query: 239 DGFMKLLAMTPIGKETFFINNDKQ--KMNATQFSIWF-KAKATKAGVNK--SAHGVRKFS 293
           D   +++  +    +T+    D +   + + Q +  + K  A   G+ K  + H  R   
Sbjct: 306 DIPKRII--SKYSHQTY---RDGKLFPILSNQKTNSYLKEIADICGIKKNLTFHLARHTF 360

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           AT+S   G     +    G   +   + Y +  ++ 
Sbjct: 361 ATMSLSKGVPIESVSKMLGHTNIRTTQIYARITNKK 396


>gi|194437475|ref|ZP_03069572.1| prophage DLP12 integrase [Escherichia coli 101-1]
 gi|260853752|ref|YP_003227643.1| putative integrase [Escherichia coli O26:H11 str. 11368]
 gi|291281447|ref|YP_003498265.1| Prophage DLP12 integrase [Escherichia coli O55:H7 str. CB9615]
 gi|293418603|ref|ZP_06661038.1| prophage DLP12 integrase [Escherichia coli B088]
 gi|194423644|gb|EDX39634.1| prophage DLP12 integrase [Escherichia coli 101-1]
 gi|257752401|dbj|BAI23903.1| putative integrase [Escherichia coli O26:H11 str. 11368]
 gi|290761320|gb|ADD55281.1| Prophage DLP12 integrase [Escherichia coli O55:H7 str. CB9615]
 gi|291325131|gb|EFE64546.1| prophage DLP12 integrase [Escherichia coli B088]
 gi|323153442|gb|EFZ39697.1| prophage DLP12 integrase [Escherichia coli EPECa14]
 gi|323963303|gb|EGB58867.1| phage integrase [Escherichia coli H489]
          Length = 387

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 42/265 (15%), Positives = 95/265 (35%), Gaps = 35/265 (13%)

Query: 112 RKITTKHIRSGVESRKHTP---------SSAIQFLTSMRVLFKWA-VRQEYVAINPCLSV 161
           ++I  + +++ +   K  P          +  + L  ++ + + A    +++   P   +
Sbjct: 116 KEIWKQKVQAAIRKGKEPPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPV--I 173

Query: 162 ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN- 220
           + P  + + +R   KE+ ++      E  +  + F     +GLR S+      Q +    
Sbjct: 174 KIPAVRNKRVRWLEKEEAKRLIDECPEPLKSVVKFALA--TGLRKSNIINLEWQQIDMQR 231

Query: 221 ---IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK-------------QKM 264
                + +  K+   I V L D   K+L         +   + K             +KM
Sbjct: 232 RVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKM 291

Query: 265 NATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
                + W      +AG+ +   H +R   A+    +G     L    GW++++    Y 
Sbjct: 292 RIDSKTSWLS-ACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYA 350

Query: 324 KGADRIRLGIKNSRRISSVVDSDDP 348
             A       +++R+I  +   + P
Sbjct: 351 HLAPNHL--TEHARKIDDIFGDNVP 373


>gi|167762500|ref|ZP_02434627.1| hypothetical protein BACSTE_00855 [Bacteroides stercoris ATCC
           43183]
 gi|167699606|gb|EDS16185.1| hypothetical protein BACSTE_00855 [Bacteroides stercoris ATCC
           43183]
          Length = 409

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 46/298 (15%), Positives = 104/298 (34%), Gaps = 31/298 (10%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG------DFDYRKITTKHIRSG-- 122
           L  L  E  KS      A  +  +++     +           D  + ++T + I     
Sbjct: 114 LDALRDE-VKSRIGIDRAKGTYPAYDFTCRTMREFIETKFKTKDLAFGQLTEQFIHDYEN 172

Query: 123 --VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
             ++ + +   +   +L  ++   K A ++ +           PK+  +  +  ++E  +
Sbjct: 173 FILDEKGYAVDTVRHYLAILKKTCKRAYQEGHSERFMFQHYVLPKQTVKTPKALSRESFE 232

Query: 181 QFK--SFWSEGSQPRLAFEFLL---YSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTG 230
           + +        +  RLA +  L   Y+G+  SD+     ++L            + +K  
Sbjct: 233 KIRDVEIAPHRTTHRLARDLFLFACYTGVAYSDAVTVTRENLYTGEDGKLWLKYRRKKNE 292

Query: 231 TIITVELPDGFMKLLAMTPIG-KETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--H 287
              +V+L    + L+       ++T F       ++        KA A  AG+ ++   H
Sbjct: 293 LRASVKLLPEAVALIEKYHDDSRDTLF-----PMIHYPSMRNHMKALAVLAGIKENLCYH 347

Query: 288 GVRKFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
             R   A++   +AG     + +  G   +   + Y +     +L     R I +  D
Sbjct: 348 VGRHSFASLVTLEAGVPIETISSMLGHSNIQTTQVYAR-VTPKKLFEDMDRLIEATGD 404


>gi|83814942|ref|YP_445217.1| Phage integrase family protein [Salinibacter ruber DSM 13855]
 gi|83756336|gb|ABC44449.1| Phage integrase family protein [Salinibacter ruber DSM 13855]
          Length = 415

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 46/284 (16%), Positives = 95/284 (33%), Gaps = 35/284 (12%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG------DFDYRKITTKHIRSGVES--- 125
           +  YR+     +     R     +   +  +SG         +  +T + IR        
Sbjct: 120 VEAYRRRDQMTTFRH-YRTGIRKFLGFLEDESGQSQEDITLSFDALTVQLIREFRNHMYE 178

Query: 126 -RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
            R + P++  + LT ++ ++  AV++ +   +P   +      ++       E+++  + 
Sbjct: 179 VRGNAPNTVGKTLTQIKTMWNAAVKEGHADRDPWPKITIDSAPSQK-EKLDFEEIEALEE 237

Query: 185 F-WSEGSQPRLAFEFLLY----SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239
               E    R A ++ L+     G+R SD      +HL+      K +KT     V + D
Sbjct: 238 VDLPEEGSERRALDYFLFALYGGGMRFSDVATLKHKHLEGGRIQYKMKKTSEGAGVPIVD 297

Query: 240 GFMKLLA----MTPIGKETFFINNDKQKM-----------NATQFSIWF-KAKATKAGV- 282
               +L          +   F   D   +           +   +     K    KA + 
Sbjct: 298 KAEAILDRYDNRPQEPESRVFPILDGYDLDEMEDVQRAIESRNAYVNRQLKKVRKKAEIE 357

Query: 283 -NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
            N + H  R  +A          +++    G   V+  E Y +G
Sbjct: 358 TNLTFHLSRHSAAWKLYREMGDIYKVKRILGHSRVEVTEEYLRG 401


>gi|289628545|ref|ZP_06461499.1| prophage PSPPH06, site-specific recombinase phage integrase family
           protein [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|289648854|ref|ZP_06480197.1| prophage PSPPH06, site-specific recombinase phage integrase family
           protein [Pseudomonas syringae pv. aesculi str. 2250]
 gi|330870312|gb|EGH05021.1| prophage PSPPH06, site-specific recombinase phage integrase family
           protein [Pseudomonas syringae pv. aesculi str. 0893_23]
          Length = 382

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 44/299 (14%), Positives = 91/299 (30%), Gaps = 48/299 (16%)

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISF-------ESYFDQIIRKSGDFDYRKITTKHIRS 121
            TL+++ +++  S  +  L++ +   +        S   ++ +  GD   +K T   I+ 
Sbjct: 75  GTLRYVCTQFHLSDRYKKLSLKTHNDYCYSRDVLLSIPTRLGKPVGDLLVKKFTAALIQR 134

Query: 122 GVESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP---KRKTEGIRPWTK 176
            V+      TPS A   L  +R + +W   + Y+  NP   +E P   KR+        +
Sbjct: 135 IVDRLADEGTPSKAAHVLRYLRRVLQWGRNRGYLDTNPAQGIEAPVERKRRRLPEHLVME 194

Query: 177 EDMQQFKSF------WSEGSQPRLAF--EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
             + +  +F         G    L++  E      LR  ++      H          +K
Sbjct: 195 ALVDRALAFGRLARNEKGGCPEYLSYVMEIGYLCRLRGIETITLTDAHELAEGIMTNRRK 254

Query: 229 TGTIITVELPDGFMKLLAMTPI-----------------GKETFFINNDKQKMNATQFSI 271
                 V                                 +    + +    +  T    
Sbjct: 255 GSRDNIVRWTPRLRAAWEGAKAYRAKVWTSKSTVIPIRPDRRYIIVASHGGALRKTSLDT 314

Query: 272 WFKAKATKAGVNKSA--------HGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
            ++   T A  + +         H +++   T +A   A   E     G +     + Y
Sbjct: 315 AWQRFITSAIEDGTITAEQRFGLHDLKRRGITDTAGNRADKQE---ASGHRDGAMMDVY 370


>gi|164688240|ref|ZP_02212268.1| hypothetical protein CLOBAR_01885 [Clostridium bartlettii DSM
           16795]
 gi|164602653|gb|EDQ96118.1| hypothetical protein CLOBAR_01885 [Clostridium bartlettii DSM
           16795]
          Length = 370

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 40/292 (13%), Positives = 89/292 (30%), Gaps = 36/292 (12%)

Query: 85  GSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTSMR 141
            +L++ +   +     + I    G+     +   HI++ V+      +P +    +  + 
Sbjct: 78  PNLSITTYNCYIRICKKYINPMLGNIKLNDLKPIHIQNYVDDLVGILSPQTIKIHINILN 137

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201
           +  K A + + V  +    +E PK K      + ++D+ +        +   L     + 
Sbjct: 138 LALKRAYKLKLVKYDIVDCIEVPKNKKFKSEVYDQKDIAKLLETIK-NTDLELPINLAIG 196

Query: 202 SGLRCSDSCRAGVQHL---------------QNNIFSIKTQKTG-TIITVELPDG----- 240
            GLR S+        +                +    +K  KT  +  T+  P       
Sbjct: 197 LGLRISEVLGLSWSDIDFTENTITIEKITARDSGKVILKEPKTDTSKRTISAPKEVMAML 256

Query: 241 -------FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKF 292
                      L          F++ ++  +     S  F     K  +     H +R  
Sbjct: 257 KDYKRKYLQDKLQGKIKDCNLLFLDKNENPIAEDVLSKKFSRFLKKHNLKHIRFHDLRHS 316

Query: 293 SATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVV 343
             T+  +A      +    G   V+     Y+       +  + S +IS  +
Sbjct: 317 HVTLLINAKVPIKVISERVGHSNVNTTLNIYSHTL--KEMDQEASEKISESI 366


>gi|323486403|ref|ZP_08091727.1| site-specific recombinase XerD [Clostridium symbiosum WAL-14163]
 gi|323400215|gb|EGA92589.1| site-specific recombinase XerD [Clostridium symbiosum WAL-14163]
          Length = 372

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 35/271 (12%), Positives = 79/271 (29%), Gaps = 37/271 (13%)

Query: 90  NSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVR 149
           N+R+ +++  D+          + +   H++  + +    P    Q + + + + + AV 
Sbjct: 85  NTRMMYKNIIDKHFAALEGVKLQDLRKVHLQLLINNASEKPRICQQIMLTYKQIIRAAVD 144

Query: 150 QEYVA----INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLR 205
           +  +        C  + RPK K    RP T  + +  K+        +     +   GLR
Sbjct: 145 ERLLPEKALRELCEKINRPKYKAREKRPLTATEKKAIKA-ADFTPMEKTFVLIIYGCGLR 203

Query: 206 CSDSCRAGVQHLQNNIFSIKTQ---------------KTGTIIT-VELPDGFMKLLAMTP 249
             +        +      +  +               KT   +  V +P      L    
Sbjct: 204 RGEVLALKPLDINLKTSELTVRGSVEFRVNNPGVKNTKTENGVRKVPIPPFLAVHLKEYL 263

Query: 250 IG--KETFFINNDKQKMNATQFSIWFKAKATKAGV------------NKSAHGVRKFSAT 295
            G          D + M  + +   ++    K  +            + +AH  R    T
Sbjct: 264 KGLTAPYLMHTQDGRMMTKSSYRRMWERIINKMNLAAGGTENLYVIHDLTAHIFRHNYCT 323

Query: 296 ISADA--GATAHELMATYGWKTVDQAETYTK 324
                    +  ++    G       + Y+ 
Sbjct: 324 ELCYQIPAISTKKIAELLGDTEKMVIDVYSH 354


>gi|257078400|ref|ZP_05572761.1| conserved hypothetical protein [Enterococcus faecalis JH1]
 gi|294780397|ref|ZP_06745764.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis PC1.1]
 gi|256986430|gb|EEU73732.1| conserved hypothetical protein [Enterococcus faecalis JH1]
 gi|294452526|gb|EFG20961.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis PC1.1]
 gi|329575632|gb|EGG57165.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX1467]
          Length = 309

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 44/288 (15%), Positives = 91/288 (31%), Gaps = 44/288 (15%)

Query: 73  WLISEYRKSAHWGSL------AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
            L  EY   + W  L         S   +     ++   +     + +  +  +  +   
Sbjct: 9   QLFHEYF--SEWVELYKVGAIRDISLQKYYIAEQRLAELAPGLKVKHLDRQRYQQLLNDY 66

Query: 127 KHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV----ERPKRKTEGIRPWTKEDMQ 180
             T    + + F   ++     AV +  ++ NP   +    + P+ K        + ++Q
Sbjct: 67  ALTHERQTTMDFHHQLKGAILDAVDEGLISKNPTRKIVIKGKAPRPKKSKF--LNQFEVQ 124

Query: 181 QFKSFWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSIKTQKT--------- 229
                   G Q    +  LL   +GLR S++     +    +   I  +KT         
Sbjct: 125 ALLKELELGEQLNWDWFILLVVKTGLRFSEALALTPKDFDFSKQKITIEKTWNYKNPTGF 184

Query: 230 -----------GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKAT 278
                         I  +    F +L+   P  +  F      +  N+T  +   K    
Sbjct: 185 FQSTKNESSKRKVQIDWQTAMQFSQLIRNMPPMEPIFV---KGRVFNST-INNRLKVLCK 240

Query: 279 KAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
           +A +   + H +R   A++   AG +   +    G  ++    ETY  
Sbjct: 241 RAQIPVITVHSLRHTHASLLLFAGVSIASVATRLGHSSMTTTQETYLH 288


>gi|257077443|ref|ZP_05571804.1| integrase [Enterococcus faecalis JH1]
 gi|294779636|ref|ZP_06745027.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis PC1.1]
 gi|256985473|gb|EEU72775.1| integrase [Enterococcus faecalis JH1]
 gi|294453293|gb|EFG21704.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis PC1.1]
          Length = 372

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 53/355 (14%), Positives = 113/355 (31%), Gaps = 52/355 (14%)

Query: 14  ERTRHGKIIYYFRKGH----GRRIRLPYPHESTFIPAYMSALTGSTPKREYIN--SPRKK 67
            + +     Y+         G+RI         F   + +A        +++     +++
Sbjct: 8   YKDKKTGKYYFVASLGFDLKGKRI-------QKFKRGFKTAKEAKKAYNQFMIDYQEKRE 60

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127
             T      EY K  +   +   +  +     +  +    +     I T  ++  +    
Sbjct: 61  KITFGNFYEEYYKCWYKNHVKEGTFKTNTGIIENHLSIFNEVQINAIETVDLQKLINYLS 120

Query: 128 H----------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
                      +P      + +++ +F+ A    ++  +    V R + + + +  WT +
Sbjct: 121 GEYKTKTGESLSPEYINLIICNIQSVFERAFIFGFIDEDISKKVSRVRVEEKEVNIWTID 180

Query: 178 DMQQFKSFWSEGSQ----PRLAFEFLLYSGLRCSDSCRAGVQHLQNN------------- 220
           DMQ+      E        ++ F FL  +GLR  ++     + +  +             
Sbjct: 181 DMQKVMLLSDESDSLLFFKKMFFRFLFMTGLRLGEALALNWEDVDFDSKVVYINKTMLVK 240

Query: 221 ---IFSIKTQKTGTII-TVELPDGFMKLLAM-----TPIGKETFFINNDKQKMNATQFSI 271
               F I T KT + I TV L D  ++L  +     +P+     F  +      +T    
Sbjct: 241 NKREFRITTPKTKSSIRTVSLDDETLRLFEIWREQQSPLKINLIFFIDGGTLAKSTTHG- 299

Query: 272 WFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
           W K     A V     H +R   A++       +  +    G   +    E Y  
Sbjct: 300 WLKKICDLADVPVIKIHALRHSHASMLIALKEDSLVIKERLGHSRITTTLEKYGH 354


>gi|305432060|ref|ZP_07401227.1| phage integrase family site-specific recombinase [Campylobacter
           coli JV20]
 gi|304445144|gb|EFM37790.1| phage integrase family site-specific recombinase [Campylobacter
           coli JV20]
          Length = 368

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 26/195 (13%), Positives = 73/195 (37%), Gaps = 20/195 (10%)

Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGS------QPRLAFEFLLYSGLRCSDSCRAGVQHLQN 219
           +  +      ++++++F              + +L  + ++++G+R S++    ++ +  
Sbjct: 174 KGAKLPEFMNEDELKKFLEAIENSDFKNNTIRNKLIIKIIIFTGIRVSEAINIKLKDISE 233

Query: 220 N----IFSIKTQKTGTIITVELPDGFMKLLAMTPI-----GKETFFINNDKQKMNATQFS 270
                I  I+ +     + V +    ++ L               F+N + + +     S
Sbjct: 234 ENELYIIRIRAKGNKYRV-VMIKKELIEHLLKDVRVNYLSEDGLLFVNRNGKALTQAYVS 292

Query: 271 IWFKAKATKAGVNKS---AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GA 326
              +    +AG+ K    AH +R   AT+          +    G   ++ +  YT    
Sbjct: 293 RIVEQILFRAGIRKQKNGAHMLRHTFATLLYKKQKDLVLVQEALGHANLNTSRIYTHFDN 352

Query: 327 DRIRLGIKNSRRISS 341
           D+++L  + ++ +S 
Sbjct: 353 DKLKLAAQVAKELSE 367


>gi|167582763|ref|ZP_02375637.1| Integrase or site-specific recombinase [Burkholderia thailandensis
           TXDOH]
          Length = 409

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 38/347 (10%), Positives = 103/347 (29%), Gaps = 34/347 (9%)

Query: 10  FVTKERTRHGKIIYYFR------------KGHGRRIRLPYPHESTFIPAYMSALTGSTPK 57
            +  E    G   + +R             G    + L           Y   +      
Sbjct: 30  GLVLEVMTSGSKFWRYRYSLHGKQQPVVTIGEYPAVSL--TMARERARRYAEIVASGVSP 87

Query: 58  REYINSPRKKPTTLKWLIS--EYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKI 114
                  R    +L  +     Y         +     + +   ++ I    G      +
Sbjct: 88  VADARKDRGAVKSLDTVREFAAYWIEQQMAGKSEEYLRTTKRALEKDIYPAIGGKSVSDV 147

Query: 115 TTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV--ERPKRKTEG 170
           T   + +  +  K    P  A+     ++ ++++A+ ++ V  NP  ++       +   
Sbjct: 148 TPGDVLAICDRIKKRGAPKMALSARNVLKRMYEYAIARQLVTANPAQAIVARFVATQDSR 207

Query: 171 IRPWTKEDMQQ-FKSFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-- 225
            R  + +++    ++ ++ G +   +LA   L+ + +R S+   A       +    +  
Sbjct: 208 DRVLSPDEIGHVLRAVYASGIRRPLKLAVHLLVLTMVRKSELIEARWDEFDLDASIWRIP 267

Query: 226 --TQKTGTIITVELPDGFMKLLAMTPIGKET---FFINNDK--QKMNATQFSIWFKAKAT 278
               K      V L    + +L      + +    F ++    + +  +  +   +A   
Sbjct: 268 AERMKKDREHWVYLAPQAVAMLRELHDSRMSHQYVFPSSRGADRPIAKSTLNQAVRALDM 327

Query: 279 KAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           +   +   H  R+ ++T   + G  +  +              Y + 
Sbjct: 328 EVQ-HFVLHDFRRTASTHLHEMGQPSDAIEKALAHSIKGIKGVYNRA 373


>gi|28198969|ref|NP_779283.1| phage-related integrase [Xylella fastidiosa Temecula1]
 gi|182681681|ref|YP_001829841.1| phage-related integrase [Xylella fastidiosa M23]
 gi|28057067|gb|AAO28932.1| phage-related integrase [Xylella fastidiosa Temecula1]
 gi|182631791|gb|ACB92567.1| phage-related integrase [Xylella fastidiosa M23]
 gi|307580118|gb|ADN64087.1| phage-related integrase [Xylella fastidiosa subsp. fastidiosa
           GB514]
          Length = 397

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 61/376 (16%), Positives = 109/376 (28%), Gaps = 73/376 (19%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGR-RIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
           +PP + + +   G I +    G GR    +P+P         ++           I   +
Sbjct: 11  IPPHIDQSKIPKG-IYW----GDGRWYTLIPHPEGGRHQKRTIAGRAARLSDLHAIIEQQ 65

Query: 66  KK---PTTLKWLISEYRKSAHWGSLAVNSRISFE-------SYFDQIIRKSGDFDYRKIT 115
                  T+  + +++  S+ +  LA  ++  ++       S+  +     G     ++ 
Sbjct: 66  HTGNVKGTVGDVFNQFHHSSEFAGLAKATQKDYQWCAQAIQSFLLKDNTTLGSKAVNRLN 125

Query: 116 TKHIRSGVESRKHT-------------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162
               +  VE                  PS A   L   R  F W +R  +   NP   V+
Sbjct: 126 VPTWQRLVEVIAQGRPAQGDSEAIQPAPSKANHMLRYARRAFAWGIRHGHCTTNPAHGVK 185

Query: 163 RPKRKTEGIRPW--TKEDMQQF------KSFWSEGS-QPRLAFEFLLYSGLRCS--DSCR 211
           + K +     P   T   +  F      +   S GS  P LA       GLR    + C 
Sbjct: 186 QAKERARYRMPDLKTFAAIHAFAAERGQRQAHSIGSVAPYLAAAMTFAYGLRLRGIEVCT 245

Query: 212 AGVQHLQNNIFSIKTQKTGTIITVELPDGFM---------------KLLAMTP--IGKET 254
               H +        +K          D                       TP       
Sbjct: 246 LTDAHHKPEGILSNRRKGSRDNITRWNDELRSAWDWLVQYRAARWASHKRATPLRPENRF 305

Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGVNK--------SAHGVRKFSATISADAGATAHE 306
            F+N    +++ +     ++     A +          S HG++          G T  E
Sbjct: 306 LFVNQSGARLSKSSLDTAWQRMIVMAIMEGVITEEERFSLHGLKH--------RGITDSE 357

Query: 307 LMATYGWKTVDQAETY 322
              + G +T    E Y
Sbjct: 358 DKRSGGHRTEVMRERY 373


>gi|325499381|gb|EGC97240.1| hypothetical protein ECD227_3478 [Escherichia fergusonii ECD227]
          Length = 326

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 45/307 (14%), Positives = 101/307 (32%), Gaps = 23/307 (7%)

Query: 26  RKGHGRRIRLPYPHESTFI--PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAH 83
           R   G+RIR  +  ++  +    Y  A       ++     R    TL  L+  + K  H
Sbjct: 18  RGRDGKRIRRKFERKAEALAFERYTIA----NASQKEWGGQRADRRTLSELLDIWWK-YH 72

Query: 84  WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK---HIRSGVESRKHTPSSAIQFLTSM 140
             +    ++    ++  + I   GD    +++ +     RS       + ++  + +  +
Sbjct: 73  GQNHEHGTKEF--NHLLKTISGIGDIPVSRMSKRALMDYRSMRLRDGISAATINRDMYRL 130

Query: 141 RVLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199
             +F   ++  E+   +P   +      T  +    K ++++  +  +      L     
Sbjct: 131 SGMFTKLIQLDEFSGQHPIHGLPPLAEATPEMTFLEKAEIEKLLNVLA--GDDLLVALLC 188

Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN 259
           L +G R ++        + N   +    K G    V + +   K +      K       
Sbjct: 189 LSTGGRWTEVATLKPAQITNCRVTFLKTKNGKKRIVPISEELEKKVKEEASAKLF----- 243

Query: 260 DKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
              K++  +F    +        N++ H +R   A+     G     L    G  ++ Q 
Sbjct: 244 ---KVDYEKFCGILRRVKPDIPPNQATHILRHTFASHFMMNGGNIIALQQILGHASIQQT 300

Query: 320 ETYTKGA 326
             Y   A
Sbjct: 301 MAYAHLA 307


>gi|302064331|emb|CBK33708.2| transposase B [Staphylococcus aureus]
          Length = 630

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 43/290 (14%), Positives = 82/290 (28%), Gaps = 35/290 (12%)

Query: 71  LKWLISEY----RKSAHWGSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSG 122
            K L+  Y         +  ++  ++   E +F+ +  K           ++  +   S 
Sbjct: 218 FKQLVKRYCKLRLNMDSFSYVSDIAQKLKE-FFNFLDIKFKHVQRVHQLTRVEIEAYLSE 276

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV----ERPKRKTEGIRPWTKED 178
           +      PS+    ++ +  LF    R E+    P   +    + PK      R   +  
Sbjct: 277 LNMMGIKPSTITGRISILEGLFSTLHRLEW-DDVPSKLLIYPEDYPKIPRAKPRFIDEFV 335

Query: 179 MQQFKSFWS-EGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-----QNNIFSIKTQKTGTI 232
           ++Q  S               +   G+R S+ C      L      +        K    
Sbjct: 336 LEQLNSHLDKLPEYIATMTMIVQECGMRISELCTLKKGCLLEDKDGDYFLKYYQWKMKKE 395

Query: 233 ITVELPDGFMKLLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NK 284
             V +      L+ +            E  F   D   +    F       A +  + +K
Sbjct: 396 HIVPISKEVALLIKVREDKVSEEFPDSEYLFPRKDGSPLKQETFRGELNKLAYEQNIVDK 455

Query: 285 S-------AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           S       AH  R    T   + G   H +    G ++ +    Y    D
Sbjct: 456 SGEIYRFHAHAFRHTVGTRMINNGVPQHIVQKFLGHESPEMTSRYAHIFD 505


>gi|283786566|ref|YP_003366431.1| fimbrial regulatory protein FimB [Citrobacter rodentium ICC168]
 gi|282950020|emb|CBG89649.1| fimbrial regulatory protein FimB [Citrobacter rodentium ICC168]
          Length = 201

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 29/167 (17%), Positives = 51/167 (30%), Gaps = 15/167 (8%)

Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYS---GLRCSDSCRAGVQHLQ--NNIFSIKTQK 228
            T+ +++      + G      +   L     G R S+ CR  +  +        I+  K
Sbjct: 13  LTQNEIESLLKAANTGPHAARNYCLTLLCFIHGFRASEICRLQISDIDLKAKCIYIRRLK 72

Query: 229 TGTIITVELPDGFMKLLAMTP--------IGKETFFINNDKQKMNATQFSIWFKAKATKA 280
            G   T  L    +K L               E  F++     ++  QF     A   +A
Sbjct: 73  KGFSTTHPLLGEEIKTLRNWLNIRISWPCSDSEWLFLSRKGNPLSRQQFYQIISAAGDQA 132

Query: 281 GVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           G+      H +R       A+ G     +    G + +     YT  
Sbjct: 133 GLPLEIHPHMLRHSCGFALANRGVDTRLIQDYLGHRNIRHTVWYTAS 179


>gi|260438910|ref|ZP_05792726.1| DNA integration/recombination/inversion protein [Butyrivibrio
           crossotus DSM 2876]
 gi|292808561|gb|EFF67766.1| DNA integration/recombination/inversion protein [Butyrivibrio
           crossotus DSM 2876]
          Length = 310

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 33/276 (11%), Positives = 87/276 (31%), Gaps = 33/276 (11%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
           K  IS Y++    G++   +   ++  +  +++   +   R +     +  +        
Sbjct: 17  KQWISVYKE----GAIRPVTMSKYKMAYQWLVKLVPELKIRDLDRISYQKLLNEYAEKHE 72

Query: 132 --SAIQFLTSMRVLFKWAVRQEYVAINPCLS--VERPKRKTEGIRPWTKEDMQQFKSFWS 187
             + + F   ++     AV +  ++ +P     ++  K + +  +   + ++ +      
Sbjct: 73  HQTTLDFHHHVKCAILDAVDEGLISRDPTRKAIIKGKKPREKKPKFLNQFELHKLIEDLH 132

Query: 188 EGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQ--------------NNIFSIKTQKTGT 231
            G +    +  LL   +G+R S++     +                          K  +
Sbjct: 133 LGPKVSWDWFILLVSKTGMRFSEALALTPKDFDFSHQTLSISKTWDYKGKGGFLPTKNQS 192

Query: 232 IITVELPDG-----FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-S 285
            +     D      F +L    P  +  F   +              +     AG+   S
Sbjct: 193 SVRKIQLDWQTVMQFAELTKSLPNDEPIFIKRSIVYNSTLNGI---LERHCKNAGIPIIS 249

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
            HG+R   A++   AG +   +    G  ++   + 
Sbjct: 250 IHGLRHTHASLLLFAGVSIASVARRLGHASMTTTQK 285


>gi|237508358|ref|ZP_04521073.1| site-specific recombinase, phage integrase family [Burkholderia
           pseudomallei MSHR346]
 gi|235000563|gb|EEP49987.1| site-specific recombinase, phage integrase family [Burkholderia
           pseudomallei MSHR346]
          Length = 228

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 31/215 (14%), Positives = 64/215 (29%), Gaps = 39/215 (18%)

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA------ 195
           ++F  AVR+     NP   +   K +T+  R  T +++   ++     +  + A      
Sbjct: 1   MIFAHAVRRGLRDRNPAREIGSAK-ETKRDRYITDDELDTVRAAIVASADDKTASARSFL 59

Query: 196 --FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT----GTIITVELPDGFMKLLAMTP 249
              +    +  R  D      Q + ++  S +  +T    G  + +E+     + L    
Sbjct: 60  CLIDLAYQTAQRIGDLLALNWQDVSDDGISFRPSQTVNRSGVRLLIEMTPDLQETLNRAR 119

Query: 250 IGK----ETFFINNDKQKMNATQFSIWFKAKATKA-------------------GVNKSA 286
            GK          +   +         +K    +A                    +    
Sbjct: 120 GGKIASIGPVICAHAGGRYTYIGAYSGWKRACLRARSAYEKDCKKKGITPNPKYLIGMHF 179

Query: 287 HGVR-KFSATISADAGATAHELMATYGWKTVDQAE 320
           H +R K         GA A +  +  G  T +   
Sbjct: 180 HDLRAKALTDPKRQQGAAAAQ--SLAGHTTENMTA 212


>gi|126458012|ref|YP_001076446.1| phage integrase family site specific recombinase [Burkholderia
           pseudomallei 1106a]
 gi|167850594|ref|ZP_02476102.1| site-specific recombinase, phage integrase family protein
           [Burkholderia pseudomallei B7210]
 gi|254186132|ref|ZP_04892650.1| site-specific recombinase, phage integrase family [Burkholderia
           pseudomallei Pasteur 52237]
 gi|126231780|gb|ABN95193.1| site-specific recombinase, phage integrase family [Burkholderia
           pseudomallei 1106a]
 gi|157933818|gb|EDO89488.1| site-specific recombinase, phage integrase family [Burkholderia
           pseudomallei Pasteur 52237]
          Length = 270

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 30/219 (13%), Positives = 64/219 (29%), Gaps = 39/219 (17%)

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA-- 195
             + ++F  AVR+     NP   +   K +T+  R  T +++   ++     +  + +  
Sbjct: 39  RLLSLIFAHAVRRGLRDRNPAREIGSAK-ETKRDRYITDDELDTVRAAIVASADDKTSSA 97

Query: 196 ------FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT----GTIITVELPDGFMKLL 245
                  +    +  R  D      Q + ++  S +  +T    G  + +E+     + L
Sbjct: 98  RSFLCLIDLAYQTAQRIGDLLALNWQDVSDDGISFRPSQTVNRSGVRLLIEMTPDLQETL 157

Query: 246 AMTPIGK----ETFFINNDKQKMNATQFSIWFKAKATKA-------------------GV 282
                GK          +   +         +K    +A                    +
Sbjct: 158 NRARGGKIASIGPVICAHAGGRYTYIGAYSGWKRACLRARSAYEKDCKKKGITPNPKYLI 217

Query: 283 NKSAHGVR-KFSATISADAGATAHELMATYGWKTVDQAE 320
               H +R K         GA A +  +  G  T     
Sbjct: 218 GMHFHDLRAKALTDPKRQQGAAAAQ--SLAGHTTESMTA 254


>gi|15837082|ref|NP_297770.1| hypothetical protein XF0480 [Xylella fastidiosa 9a5c]
 gi|9105331|gb|AAF83290.1|AE003898_2 hypothetical protein XF_0480 [Xylella fastidiosa 9a5c]
          Length = 390

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 60/380 (15%), Positives = 108/380 (28%), Gaps = 73/380 (19%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGR-RIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
           +PP + + +   G I +    G GR    +P+P         ++           I   +
Sbjct: 11  IPPHIDQSKIPKG-IYW----GDGRWYTLIPHPEGGRHQKRTIAGRGARLSDLHAIIEQQ 65

Query: 66  KK---PTTLKWLISEYRKSAHWGSLAVNSRISFE-------SYFDQIIRKSGDFDYRKIT 115
                  T+  + +++  S+ +  LA  ++  ++       S+  +     G     ++ 
Sbjct: 66  HTGNVKGTVSDVFNQFHHSSEFAGLAKATQKDYQWCAQTIQSFLLKDNTTLGSKAVNRLN 125

Query: 116 TKHIRSGVESRKHT-------------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162
               +  VE                  PS A   L   R  F W +R  +   NP   V+
Sbjct: 126 VPTWQRLVEVIAQGRPAQGDCEAIQPAPSKANHMLRYARRAFAWGIRHGHCTTNPAHGVK 185

Query: 163 RPKRKTEGIRPW--TKEDMQQFKS------FWSEGS-QPRLAFEFLLYSGLRCS--DSCR 211
           + K +     P   T   +  F +          GS  P LA       GLR    + C 
Sbjct: 186 QAKERARYRMPDLKTFTAIHAFAAERGQYQAHRIGSVAPYLAAAMTFAYGLRLRGIEVCT 245

Query: 212 AGVQHLQNNIFSIKTQKTGTIITVELPDGFM---------------KLLAMTP--IGKET 254
               H +        +K          D                       TP       
Sbjct: 246 LTDAHHKPEGILSNRRKGSRDNITRWNDELRSAWDWLVQYRAARWSSHKRATPLRPENRF 305

Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGVNK--------SAHGVRKFSATISADAGATAHE 306
            F+N    +++ +     ++     A +          S HG++          G T  E
Sbjct: 306 LFVNQSGARLSKSSLDTAWQRMIVMAIMEGVITEEERFSLHGLKH--------RGITDSE 357

Query: 307 LMATYGWKTVDQAETYTKGA 326
              + G +T    E Y    
Sbjct: 358 DKRSGGHRTEAMRERYNHEV 377


>gi|320180759|gb|EFW55685.1| Integrase [Shigella boydii ATCC 9905]
 gi|320196862|gb|EFW71484.1| Integrase [Escherichia coli WV_060327]
          Length = 326

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 45/307 (14%), Positives = 101/307 (32%), Gaps = 23/307 (7%)

Query: 26  RKGHGRRIRLPYPHESTFI--PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAH 83
           R   G+RIR  +  ++  +    Y  A       ++     R    TL  L+  + K  H
Sbjct: 18  RGRDGKRIRRKFERKAEALAFERYTIA----NASQKEWGGQRADRRTLSELLDIWWK-YH 72

Query: 84  WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK---HIRSGVESRKHTPSSAIQFLTSM 140
             +    ++    ++  + I   GD    +++ +     RS       + ++  + +  +
Sbjct: 73  GQNHEHGTKEF--NHLLKTISGIGDIPVSRMSKRALMDYRSMRLRDGISAATINRDMYRL 130

Query: 141 RVLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199
             +F   ++  E+   +P   +         +    K ++++  +  +      L     
Sbjct: 131 SGMFTKLIQLDEFSGQHPIHGLPPLAEANPEMTFLEKAEIEKLLNVLA--GDDLLVALLC 188

Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN 259
           L +G R ++        + N   +    K G   TV + +   K +      K       
Sbjct: 189 LSTGGRWTEVATLKPAQITNCRVTFLKTKNGKKRTVPISEELEKKVKEEASAKLF----- 243

Query: 260 DKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
              K++  +F    +        N++ H +R   A+     G     L    G  ++ Q 
Sbjct: 244 ---KVDYEKFCGILRRVKPDIPPNQATHILRHTFASHFMMNGGNIIALQQILGHASIQQT 300

Query: 320 ETYTKGA 326
             Y   A
Sbjct: 301 MAYAHLA 307


>gi|298245094|ref|ZP_06968900.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
 gi|297552575|gb|EFH86440.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
          Length = 396

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 51/339 (15%), Positives = 109/339 (32%), Gaps = 48/339 (14%)

Query: 29  HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLA 88
           +G+R       E+        AL     + E++   R+K     +L+  Y  S H  ++ 
Sbjct: 43  NGKRKSFYGATETEAKKKRKEALA-QLARGEHVEVDRQKVG--DYLL--YWISVHGPTIE 97

Query: 89  VNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFL-TSMRVLF 144
            ++   +  +  +  +   G    +K+T + +++      ++   S+ I  L   ++   
Sbjct: 98  RSTAQMYGYHIRNHFVPGIGHIALQKLTVEDLQTFFNKLIKEGLQSTTIHLLHRILKAAL 157

Query: 145 KWAVRQEYVAINPCLSVERPK-RKTEGIRPWTKEDMQQF----KSFWSEGSQPRLAFEFL 199
             A+R E +A NP   V+ PK ++    R  T E  Q F    ++  +EG Q        
Sbjct: 158 NDAIRWEKIAKNPARYVKLPKEQEKREKRILTAEQAQTFINAAQNALNEGRQIGAVTLLF 217

Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIKTQ-----------------KTGTIITVELPDGFM 242
           + + +R  ++       +      I+ +                 K+ + +   L     
Sbjct: 218 MTTAIRIGEALSLHWSEVNFEKKEIRIENTLKYDRENPGFYETGPKSKSSVRRILLSRLA 277

Query: 243 KLLAMTPI--------------GKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286
                                      F N     M  T      ++     G+  +   
Sbjct: 278 LETLSAHRINQVEQRLQASEWEDNNLVFTNPKGGHMWDTTIRYQLRSFLKGLGLPEDLRP 337

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
           H +R   +T   +AG +   +    G   +    + Y  
Sbjct: 338 HELRHNVSTALIEAGVSIKTVQEMLGHSKISTTMDIYGH 376


>gi|293370975|ref|ZP_06617517.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|292633905|gb|EFF52452.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
          Length = 409

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 46/266 (17%), Positives = 87/266 (32%), Gaps = 35/266 (13%)

Query: 90  NSRISF---ESYFDQIIR---KSGDFDYRKITTKHIRSG----VESRKHTPSSAIQFLTS 139
            +   +     +  + IR      D   ++I+   I         + K   ++  +F+  
Sbjct: 129 ATYRKYEVTRRHLAEFIRSKYNVSDISIKEISPMFITDFELYLRTACKCGYNTTAKFMQF 188

Query: 140 MRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQQFKS---FWSEGSQPRLA 195
            + +   A     +  +P  S + R ++   G    T+++++               R  
Sbjct: 189 FKRIIIIARNNGILVGDPFASYKIRLEKVDRGY--LTEDEIKIILKKKMVSERLEHVRDL 246

Query: 196 FEFLLYSGLRCSDSCRAGVQHL-----QNNIFSIKTQKTGTIITVELPDG----FMKLLA 246
           F F  ++GL   D       ++      N     K QKT T + V L D       K   
Sbjct: 247 FVFACFTGLAYIDVAGLTQDNICKSFDGNLWIMTKRQKTNTDVNVPLLDIPKMILKKYKG 306

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS-ADAGAT 303
             P GK    I+N K        + + K  A   G+ K  + H  R   AT +    G  
Sbjct: 307 KLPNGKILPVISNQK-------LNAYLKEIADVCGIKKNLTFHLARHTFATTTTLSKGVP 359

Query: 304 AHELMATYGWKTVDQAETYTKGADRI 329
              +    G   ++  + Y +  +  
Sbjct: 360 IETVSKMLGHTNIETTQIYARITNSK 385


>gi|284008020|emb|CBA74104.1| phage integrase [Arsenophonus nasoniae]
          Length = 318

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 39/281 (13%), Positives = 86/281 (30%), Gaps = 33/281 (11%)

Query: 88  AVNSRISFESYFDQIIRKSG-----DFDYRKITTKHIRSGVESRKH---TPSSAIQFLTS 139
           +  S+ +  S    +    G      FD+  +T   I+  ++   +    P++    L +
Sbjct: 33  SKKSQKTMRSCLTTVSSMFGCNEPLHFDWSSLTRDMIQVVLQRLLNEHKAPNTINLILCA 92

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGI----RPWTKEDMQQFKSFWSEGS----- 190
           ++ + + A     +  +    V+  KR         R     +++   +F    +     
Sbjct: 93  IKGVAEEARASRLMDADNYHDVKNIKRIRGARISRGRMLECTEIKHLFTFLDIQTTGAAI 152

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMK----L 244
           +       +   GLR S+     + H+   NN   I  +     I   +P    K     
Sbjct: 153 RDAALISLMFGCGLRRSEVADLDIDHIDFENNKIDIHGKGNKERIN-YMPPETAKRMSLW 211

Query: 245 LAMTPIGKETFFINNDKQ-------KMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATI 296
           +               ++       ++         K   TK  +   + H +R+  A++
Sbjct: 212 VDTVRGDHSGPLFTRIRKNDDVTSDRLTTNGIGFIIKQLVTKLSLKLFTPHDLRRSYASL 271

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
             + G     +    G  +V   + Y K     RL      
Sbjct: 272 LLENGEDILTVKEALGHASVVTTQQYDKR-SIKRLEAAALN 311


>gi|260171160|ref|ZP_05757572.1| transposase [Bacteroides sp. D2]
 gi|315919477|ref|ZP_07915717.1| transposase [Bacteroides sp. D2]
 gi|313693352|gb|EFS30187.1| transposase [Bacteroides sp. D2]
          Length = 410

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 46/266 (17%), Positives = 89/266 (33%), Gaps = 35/266 (13%)

Query: 90  NSRISF---ESYFDQIIR---KSGDFDYRKITTKHIRSG----VESRKHTPSSAIQFLTS 139
            +   +     +  + I+      D    +IT   I         + K   ++  +F+  
Sbjct: 129 ATYRKYEVTRRHLAEFIQSKYNISDIAINEITPMFITDFELYLRTACKCGYNTTAKFMQF 188

Query: 140 MRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQQFKSFWSEGSQ---PRLA 195
            + +   A     +  +P  + + R ++   G    T+++++          +    R  
Sbjct: 189 FKRIILIARNNGILVGDPFANYKIRLEKVDRGY--LTEDEIKIILKKKMVSERLENVRDL 246

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQ-----NNIFSIKTQKTGTIITVELPDG----FMKLLA 246
           F F  ++GL   D       +++     N     K QKT T + V L D       K   
Sbjct: 247 FIFSCFTGLAYIDVANLTQDNIRKSFDGNLWIITKRQKTNTDVNVPLLDIPKMILKKYKG 306

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA-GAT 303
             P GK    I+N K        + + K  A   G+ K  + H  R   AT +  A G  
Sbjct: 307 KLPNGKILPVISNQK-------LNAYLKEIADVCGIKKNLTFHLARHTFATTTTLAKGVP 359

Query: 304 AHELMATYGWKTVDQAETYTKGADRI 329
              +    G   ++  + Y +  +  
Sbjct: 360 VETVSKMLGHTNIETTQIYARITNNK 385


>gi|226306387|ref|YP_002766347.1| integrase [Rhodococcus erythropolis PR4]
 gi|226185504|dbj|BAH33608.1| putative integrase [Rhodococcus erythropolis PR4]
          Length = 387

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 43/286 (15%), Positives = 83/286 (29%), Gaps = 35/286 (12%)

Query: 87  LAVNSRISFESYF--DQIIRKSGDFDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRV 142
           L   +R  +E        +         +I    +R        T   ++  +    M+ 
Sbjct: 103 LRPRTRKEYERMLGTTGSLFHWSATPINEIRPDAVREWRSELLATGKATATARAYDLMKS 162

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202
           + K AV    ++ NPC  ++     T G       +++          + +         
Sbjct: 163 ILKTAVEDGLISANPCK-IKGGSLTTTGKSTTPPTEVELDIVIEKIVPKYKPFVIIAAAG 221

Query: 203 GLRCSDSCRAGVQHL----------------------QNNIFSIKTQKTGT-----IITV 235
           GLR  +        +                      + N  +       +     II +
Sbjct: 222 GLRFGEVIGLTSDDVAVERDDDDEVDAVRIAVVRSIVEGNGIAKVAGPPKSAAGRRIIAI 281

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ-FSIWFKAKATKAGV-NKSAHGVRKFS 293
              D  +    +  +        +      +    +  ++     AG  + + H +R ++
Sbjct: 282 FGHDARIVAAHVESVKPGALLWTDRSGGYVSQSTVNNHWRKARAAAGRSDLAFHSLRHYA 341

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADR-IRLGIKNSRR 338
            T  A  GAT  E MA  G  +V  A  Y     R   L  + SRR
Sbjct: 342 GTRYAQTGATVAETMARLGHSSVKAAMRYQHAGTRDDELARRASRR 387


>gi|213648766|ref|ZP_03378819.1| site-specific recombinase, phage integrase family protein
           [Salmonella enterica subsp. enterica serovar Typhi str.
           J185]
          Length = 296

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 40/286 (13%), Positives = 91/286 (31%), Gaps = 21/286 (7%)

Query: 45  PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR 104
             Y  A       ++     R    TL  L++ + K  H  +    ++    ++  + I 
Sbjct: 9   ERYTIAYA----SQKEWAGQRADRRTLSELLNIWWK-YHGQNHEHGTKEF--NHLLKTIS 61

Query: 105 KSGDFDYRKITTK---HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVR-QEYVAINPCLS 160
             GD    +++ +     RS       + ++  + +  +  +F   ++  E+   +P   
Sbjct: 62  GIGDIPVSRMSKRALMDYRSMRLRDGISAATINRDMYRLSGMFTKLIQLDEFSGQHPIHG 121

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220
           +         +    K ++++  +         L     L +G R ++        + N 
Sbjct: 122 LPPLAEANPEMTFLEKAEIEKLLNVLD--GDDLLVALLCLSTGGRWTEVATLKPAQITNC 179

Query: 221 IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280
             +    K G   TV + +   K +      K          K++  +F    +      
Sbjct: 180 RVTFLKTKNGKKRTVPISEELEKKVKEEASAKLF--------KVDYEKFCGILRRVKPDI 231

Query: 281 GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
             N++ H +R   A+     G     L    G  ++ Q   Y   A
Sbjct: 232 PPNQATHILRHTFASHFMMNGGNIIALQQILGHASIQQTMAYAHLA 277


>gi|210134881|ref|YP_002301320.1| integrase-recombinase protein [Helicobacter pylori P12]
 gi|210132849|gb|ACJ07840.1| integrase-recombinase protein [Helicobacter pylori P12]
          Length = 356

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 27/191 (14%), Positives = 66/191 (34%), Gaps = 22/191 (11%)

Query: 167 KTEGIRPWTKEDMQQFKS-------FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-- 217
             +       E++++F              ++ RL  + ++++G+R +++ +  ++    
Sbjct: 162 GNKLPTHLNNEELEKFLEGIDKIEMSAKVRARNRLLIKIIVFTGMRSNEALQLKIKDFTL 221

Query: 218 QNNIFSIKTQKTGTIITVELPDG------FMKLLAMT---PIGKETFFINNDKQKMNATQ 268
           +N  ++I  +  G      +           + L      P+  +  F N     +    
Sbjct: 222 ENGCYTILIKGKGDKYRAVMLKAFHIESLLKEWLMERELYPVKNDLLFCNQKGGALTQAY 281

Query: 269 FSIWFKAKATKAGVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
                +     AG+ +    AH +R   AT+          +    G  +++ +  YT  
Sbjct: 282 LYRQVERIINFAGLRREKNGAHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTH- 340

Query: 326 ADRIRLGIKNS 336
            D+ RL    S
Sbjct: 341 FDKQRLEEAAS 351


>gi|123442607|ref|YP_001006584.1| putative phage integrase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122089568|emb|CAL12417.1| putative phage integrase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 429

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 39/250 (15%), Positives = 84/250 (33%), Gaps = 45/250 (18%)

Query: 113 KITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
           +I   H  +    +  +  +   +++ +  +  +A +  Y   NP + V   K+      
Sbjct: 144 QILGHHQTNRSMKKGRSVPTVNVYISCLGAMLGFAFQNGYSDKNPMIGVSPLKKGRPDPD 203

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ----- 227
           P TK + Q+F S      Q +  +   + +G+R  + C    + +    ++I  +     
Sbjct: 204 PLTKSEYQRFLSASPS-EQMKNIWILAINTGMRHGEICALSWEDIDTKNWTITIRRNMAV 262

Query: 228 -------KTGT-----IITVELPDGFMKLLAMTPIG-----------------KETFFI- 257
                  KT +      +T    +     +AMT +G                  +  F+ 
Sbjct: 263 INHFTPPKTDSGNREIRLTYPAIEALKNQMAMTRLGECHDITVNLREFAKKRVDQCTFVF 322

Query: 258 -------NNDKQKM-NATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELM 308
                  N +     +       + A   KAG+ ++ A+  R   A  +  AGA  + + 
Sbjct: 323 CPKISARNGNGGHWYSPGSIGTAWNAILKKAGIRHRKAYESRHTFACWALSAGANPNFVA 382

Query: 309 ATYGWKTVDQ 318
              G  +   
Sbjct: 383 NQMGHASAQM 392


>gi|254228199|ref|ZP_04921628.1| Integrase [Vibrio sp. Ex25]
 gi|262394055|ref|YP_003285909.1| integrase [Vibrio sp. Ex25]
 gi|151939272|gb|EDN58101.1| Integrase [Vibrio sp. Ex25]
 gi|262337649|gb|ACY51444.1| integrase [Vibrio sp. Ex25]
          Length = 401

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 48/352 (13%), Positives = 102/352 (28%), Gaps = 48/352 (13%)

Query: 20  KIIYYFRKGHGRRIRL---PYPHESTFIPAYMSALTGSTPKREYINSPR--------KKP 68
           K  +Y+R    +R  L                    G     + +   R        +K 
Sbjct: 41  KYYFYYRLNGKQRNYLLGAATSLTPAQARDLAKEKAGLVAGGQDVQETRFEAKREALRKT 100

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV-ESRK 127
            TL+  + E+ +S    +L   +            +        +IT   ++  V E RK
Sbjct: 101 LTLERFLDEHYESY-LQALNPKTAKQSFMCIKSSFKHLAHKPMSEITAWDVQQWVSEKRK 159

Query: 128 HTPSS--AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
              +S         ++  F  AV  +++  +   SV+  K   + IR  +  +       
Sbjct: 160 LGRASSTISYAYNRLKAAFNRAVEWDFIDSHTLSSVKIVKEDDQRIRYLSTAEETALLDS 219

Query: 186 WSEGS--------------QPRLAFE--------FLLYSGLRCSDSCRAGVQHL--QNNI 221
                               P+L +           + +G+R  +      +H+  +N  
Sbjct: 220 LKVRDIRLRENQKQAHRQEVPKLRYADYLEPLIVMAINTGMRKGEMLSLCWEHINFENRY 279

Query: 222 FSIKTQ--KTGTIITVELPDGFMKLLAMTPIGK----ETFFINNDKQKMNATQFSIWFKA 275
            +I +   K+    T+ L D    +L                 ++ + +    +   ++ 
Sbjct: 280 LTITSANAKSKKRRTIPLNDTVFSMLNDWKAQNYSEESGLVFTSNGKPI--DTYQYQWEQ 337

Query: 276 KATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
               A + N   H +    A+    A    + +    G   +     Y   A
Sbjct: 338 LLKDANIQNFRFHDLCHHFASKLVMAAVDLNTVRELLGHADLKMTLRYAHLA 389


>gi|114566278|ref|YP_753432.1| site-specific recombinase XerD-like protein [Syntrophomonas wolfei
           subsp. wolfei str. Goettingen]
 gi|114337213|gb|ABI68061.1| Site-specific recombinase XerD-like protein [Syntrophomonas wolfei
           subsp. wolfei str. Goettingen]
          Length = 321

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 38/281 (13%), Positives = 90/281 (32%), Gaps = 38/281 (13%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF 136
           +Y+ S+ + +++         +FD+   +    +    T   ++   +      ++    
Sbjct: 19  DYKMSSGYKAVSF---YVNLRHFDRFCVQQEIKEPVFTTDNAVKWIQKKGTEGTTTHYSR 75

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS--EGSQPR- 193
           +  ++    +  R+ Y  +     ++  K        +T  D++++       E +Q R 
Sbjct: 76  VNGIKQFLIFLSRKGY-DVFITRDIK-FKPTEFQPHIYTDADIRRYFHAVDTYESAQNRK 133

Query: 194 ------LAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLL 245
                 + F  L   G R +++     + +   N I  +   K      + L D    L+
Sbjct: 134 NAIQYPVLFRLLYCCGTRINETLGIRKKDVDLENGIIKLFETKNDCERYIILGDDLRVLM 193

Query: 246 AMTP-------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-------SAHGVRK 291
                        ++  F  ++  +++        +    +AG+           H  R 
Sbjct: 194 KQFAEKCFYLLGDEDYIFTTSNGSRISGDVLYEVHRLFLQQAGIPYLGGGKGPRVHDWRH 253

Query: 292 FSATI----SADAGATAHE----LMATYGWKTVDQAETYTK 324
             A        DAG   +     L    G KT+   E Y +
Sbjct: 254 TMAVRSFKQMIDAGMDMYVSLPILSTYLGHKTIFATERYVR 294


>gi|315640367|ref|ZP_07895482.1| bacteriophage integrase [Enterococcus italicus DSM 15952]
 gi|315483872|gb|EFU74353.1| bacteriophage integrase [Enterococcus italicus DSM 15952]
          Length = 388

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 48/325 (14%), Positives = 109/325 (33%), Gaps = 49/325 (15%)

Query: 48  MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKS 106
             AL+      E     ++     K L   +        +   ++   + +F+  I++  
Sbjct: 46  QLALSRLQVDFEKNGLEKRSSMKFKELYELWFAQHK-KDIKPTTQQRIQIFFNNHILKAF 104

Query: 107 GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
           GD    +IT  + +  + +     S+     T + ++FK+A     +  NP      PK 
Sbjct: 105 GDRFINEITPLYCQKQLNAWSEKYSTYKAMRTYVSMVFKYANLIALMDDNPMERTIIPKA 164

Query: 167 KTEGIRPWTK-----EDMQQFKSFW--SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN 219
           K + ++  +      E++Q F       +  +    F  L + GLR  ++     + +  
Sbjct: 165 KKKPVKSDSDSYYTKEEVQAFLRCLLRLKDYRAHTFFRVLAFVGLRKGEAMALLWEDIDF 224

Query: 220 NIFSIKTQKTGTII------------------------TVELPDGFMKL---------LA 246
           +  +I   KT   +                        T+ +   +            + 
Sbjct: 225 DNNTINVSKTLAELQSGKAIIQDPKTESSNRTISVDSNTMRILKEWRNHIKQNRLKLGIR 284

Query: 247 MTPIGKETFFIN---NDKQKMNATQFSIWFKAKATKAGVNKSA---HGVRKFSATISADA 300
            T  GK+  F N    ++ +     +      + +K   +      H  RK +A++  ++
Sbjct: 285 DTNFGKKLVFSNSIYTNENQYLYKSYPNNVMKRVSKHYPDMKIIKVHDFRKTNASLLFES 344

Query: 301 GATAHELMATYGWKTVD-QAETYTK 324
           GA+  ++    G  +     + Y K
Sbjct: 345 GASIKDVSQRLGHSSTKITTDIYIK 369


>gi|260462714|ref|ZP_05810920.1| integrase family protein [Mesorhizobium opportunistum WSM2075]
 gi|259031620|gb|EEW32890.1| integrase family protein [Mesorhizobium opportunistum WSM2075]
          Length = 280

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 36/246 (14%), Positives = 80/246 (32%), Gaps = 21/246 (8%)

Query: 99  FDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS--SAIQFLTSMRVLFKWAVRQEYVAIN 156
            D     SGD           R  +E ++      +    ++++R  F   + +     +
Sbjct: 1   MDARPHSSGDSPDTATADDLRRFQIEQQEDGVPVPTMNSIVSALRFFFTQTLDR----PD 56

Query: 157 PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216
               + R           +++++ +  +  +       A      +GLR ++     V  
Sbjct: 57  LARRLVRLAHPRNLPVVLSRDEVARLLNATTCLKHQ-AALSVAYGAGLRVAEVSMLKVTD 115

Query: 217 LQNNIFSIKTQ--KTGTIITVELPDGFMKLLAMT-PIGKETFFINNDK---------QKM 264
           L +    ++ +  K G      L +  ++LL     +G++   ++ D          + +
Sbjct: 116 LDSERMLLRVERGKGGRYRNAMLSEDLLRLLREWWKVGRQQGVMHRDGWLFPGQHAMKPI 175

Query: 265 NATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           +  Q        A  A + K    H +R   AT   + G     +    G   ++    Y
Sbjct: 176 STRQLYRIVVEAAQAADIAKRVGPHTLRHSFATHLLEDGTDIRIIQVLLGHAKLNNTALY 235

Query: 323 TKGADR 328
            K A R
Sbjct: 236 AKVATR 241


>gi|253682391|ref|ZP_04863188.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum D str. 1873]
 gi|253562103|gb|EES91555.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum D str. 1873]
          Length = 236

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 76/231 (32%), Gaps = 38/231 (16%)

Query: 151 EYVAINPCLSVERPKRKT-----EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLR 205
           +++  NP   V  PK        + ++  T ++ ++    + E S   +  +    +G+R
Sbjct: 7   QFIKENPMQYVTMPKYNDLKPTCDNLKIITLDEFRRIIKRFLEESNFYIPLQIGFNTGMR 66

Query: 206 CSDSCRAGVQHLQNNIFSIKTQK----------------TGTIITVELPDGFMKLLAMTP 249
            ++ C      +     +IK +K                  +  T+ + +  + +L    
Sbjct: 67  AAEVCGLTWDCVDLKNKTIKVEKILIKQKREWVFGTPKTKSSYRTILIGNTLVNILKHHK 126

Query: 250 --------------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSAT 295
                                   + + +    F    +    +  +N   H +R   AT
Sbjct: 127 KQQIENKLKYGEYYTNNNFVCTKENGELVTTDSFKYLSRVINYELQINFCFHSLRHTHAT 186

Query: 296 ISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVVDS 345
           +  +AGA   ++    G   +    +TY+   +  +L   +     SV+ S
Sbjct: 187 MMLEAGANIKDIQHRLGHSKLSTTMDTYSHVTN--KLTQTSVDLFESVISS 235


>gi|253688018|ref|YP_003017208.1| integrase family protein [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251754596|gb|ACT12672.1| integrase family protein [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 409

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 46/289 (15%), Positives = 98/289 (33%), Gaps = 20/289 (6%)

Query: 56  PKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRIS-FESYFDQIIRKSGDFDYRKI 114
            + E          T + + +E+ K+     LA ++    + S    +    G      I
Sbjct: 92  KQAEQSRQKNATENTFEKVAAEWFKTKESAGLATHTLNDIWRSMSKYVFPHIGSMPIANI 151

Query: 115 TTKHIRSGVESRKHTPS--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVER--PKRKTEG 170
           T +     +E    +    +  +    +  +  +A+    V++NP   + R   K K + 
Sbjct: 152 TAQRFIGALEPTHASGRLETVKRLSQRINEVMDYALNSGLVSVNPAARIGRTFHKPKVKH 211

Query: 171 IRPWTKEDMQQF---KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-- 225
                 E +       SF S G Q R   E+ L +  R +++  +    +  +    +  
Sbjct: 212 RPALLPEQLPLLMKTLSFASIGRQTRCLIEWQLLTMTRPAEAAESRWDEIDFDAKEWRIP 271

Query: 226 --TQKTGTIITVELPDGFMKLLAMTPI---GKETFFI--NNDKQKMNATQFSIWFKAKAT 278
               K      + L +  + +L +       ++  F    N  + MN+   ++  K    
Sbjct: 272 AGRMKMKREHVIPLSEQALGILEVMKPISKHRDYVFPGYRNPLEPMNSQTANMALKRMGF 331

Query: 279 KAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET-YTKGA 326
           K      AHG+R  ++TI  + G     + A       ++    Y +  
Sbjct: 332 KD--MLVAHGMRAIASTILNEKGFPPDVIEAALAHIDTNEVRRAYNRAQ 378


>gi|238021359|ref|ZP_04601785.1| hypothetical protein GCWU000324_01258 [Kingella oralis ATCC 51147]
 gi|237868339|gb|EEP69345.1| hypothetical protein GCWU000324_01258 [Kingella oralis ATCC 51147]
          Length = 387

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 61/377 (16%), Positives = 109/377 (28%), Gaps = 68/377 (18%)

Query: 11  VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP------ 64
           + K     GK +Y  +    R     Y    TF    ++A      + E   +P      
Sbjct: 4   IVKRINPSGKTVYRAQIRIDRAAYPKYAESRTFSERRLAAAWLKKREAELEANPELLYYG 63

Query: 65  --RKKPTTLKWLISEYRKSA---HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119
             ++   TL   I  Y        +G     +      Y              KI    I
Sbjct: 64  GKKQTIPTLAQAIERYFSEPAATEFGRTKTATLKFLSGY------PIAKLPLDKIRRADI 117

Query: 120 RSGVESRKH--------TPSSAIQFLTSMRVLFK-----WAVRQEYVAINPC----LSVE 162
            + +  R+          P +    L  +R + K     W +   +  I+          
Sbjct: 118 AAHINQRRDGWGGFLPVKPQTVNNDLQYIRSMLKHAHFVWGLNVNWAEIDLAIEGARRAR 177

Query: 163 RPKRKTEGIRPWTKEDMQQ----FKSFWSEGS-----QPRLAFEFLLYSGLRCSDSCRAG 213
              +  E +R  T +++Q     F   W+           L   F +YS  R ++  R  
Sbjct: 178 LIGKSEERMRLATAQELQALTTHFYQQWTTRPNSTKFPMHLIMWFAIYSCRREAEITRLA 237

Query: 214 VQHLQ--NNIFSIKTQK-----TGTIITVELPDGFMKLLAMTPIGK------------ET 254
                     + ++  K      G      + D   +++A     +            ET
Sbjct: 238 WVDYDKTAGDWLVRDLKSPSGSKGNHARFLVNDKLRQVIAAFRQPEIQNRLKWREMQPET 297

Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGW 313
           + I  D     +   S  F       G+ +   H +R   AT  A+ G T  ++      
Sbjct: 298 WLIGGD-----SKSISASFTRACKLLGIEDLRFHDLRHEGATRLAEDGLTVPQMQQITLH 352

Query: 314 KTVDQAETYTKGADRIR 330
           ++    + Y   A R R
Sbjct: 353 QSWKTLQRYVNLATRPR 369


>gi|213579719|ref|ZP_03361545.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
          Length = 167

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 57/166 (34%), Gaps = 13/166 (7%)

Query: 156 NPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLAFEFLLYSGLRCSDSCRA 212
           NP   V  PK      +    +D+ +            + R   E +  +GLR S+    
Sbjct: 1   NPAKGVSAPKAPRHLPKNIDVDDVNRLLDIDLNDPLAVRDRAMLEVMYGAGLRLSELVGL 60

Query: 213 GVQHLQNNIFSIKTQKTGTIIT--------VELPDGFMKLLAMTPIGKETFFINNDKQKM 264
            ++HL  +   +     G+           V   + ++ L  +    +E  F++   +++
Sbjct: 61  DIKHLDLDTGEVWVMGKGSKERRLPIGRNAVTWIEHWLDLRGLFASDEEALFLSKLGKRI 120

Query: 265 NATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELM 308
           +A      F     K G+N     H +R   AT   ++      + 
Sbjct: 121 SARNVQKRFAEWGIKQGLNSHVHPHKLRHSFATHMLESSGDLRGVQ 166


>gi|325269967|ref|ZP_08136576.1| integrase [Prevotella multiformis DSM 16608]
 gi|324987690|gb|EGC19664.1| integrase [Prevotella multiformis DSM 16608]
          Length = 411

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 45/272 (16%), Positives = 99/272 (36%), Gaps = 29/272 (10%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQ------IIRKSGDFDYRKITTK---HIRSGVESR 126
            +Y K    G  A  + + +++ +        I  +  D   +++T          + + 
Sbjct: 118 EDYEKQVEAGMKAKGTLLKYKTVYKHLQEFLTIRYRVKDIALKELTPAFISDFEMFLRTD 177

Query: 127 KHTPSSAIQFLTS-MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           KH  ++ +      +R +   A+  E++  +P    E  K +T      TKE+++     
Sbjct: 178 KHCCTNTVWLYVCPLRTMVFIAINNEWLTRDPFREYEIKKEETT-RSFLTKEEIRLLMEG 236

Query: 186 WSEGSQPRLAFEFLLY---SGLRCSDSCRAGVQHLQN-----NIFSIKTQKTGTIITVEL 237
             + ++  L  +  L+   +GL  +D      +++          +I  QKTG +  + L
Sbjct: 237 RLKNAKQELYRDLYLFCAFTGLSFADMRNLTEENIHTYFDEHEWININRQKTGVVSNIRL 296

Query: 238 PDGFMKLLA--MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFS 293
            D   +++       G    F                 ++ A + G+ K  + H  R  +
Sbjct: 297 LDIAKRIIDKYRGLCGNGRIFPVPH-----YNTCLAGIRSVAKRCGITKHITWHQSRHTA 351

Query: 294 AT-ISADAGATAHELMATYGWKTVDQAETYTK 324
           AT +    G     + +  G K++   + Y K
Sbjct: 352 ATTVFLSNGVPIETVSSMLGHKSIKTTQIYAK 383


>gi|319644364|ref|ZP_07998837.1| hypothetical protein HMPREF9011_04440 [Bacteroides sp. 3_1_40A]
 gi|317384161|gb|EFV65135.1| hypothetical protein HMPREF9011_04440 [Bacteroides sp. 3_1_40A]
          Length = 346

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 32/233 (13%), Positives = 78/233 (33%), Gaps = 28/233 (12%)

Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWA--VRQEYVAIN-PCLSVERPKRKTEGIRPWT 175
           I    E RK +P +    L+ ++   ++    + +++  +     ++R ++  + +   T
Sbjct: 72  IAWLKEVRKCSPQTCNHRLSILKNFLRFLAHKKIQFIKYDCDAAEIKRMQQPKKQVEVIT 131

Query: 176 KEDMQQFKS----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS---IKTQK 228
           K  +++  +        G +    F  L  +G R  +     +  L  +      +   K
Sbjct: 132 KYTIKRIFASINTRTLIGKRDFALFNLLYSTGTRIDEILSLRLSALHLDETKGYILVLGK 191

Query: 229 TGTIITVELPDGFMKLLA--------MTPIGKETFFINNDK---QKMNATQFSIWFKAKA 277
                T+ L +  +++L           P+  +  F        +K+ +   S   K   
Sbjct: 192 GNKQRTIYLLNSMVRILRHYVKLFHPANPLPSDFVFFPIYGHANKKITSEAISKRLKMYV 251

Query: 278 TKAG-----VNKSAHG--VRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
             A      +    H    R   AT   + G    ++    G ++++    Y 
Sbjct: 252 RIASQGLLEIPVDFHCHSFRHARATHWLEDGVNLAQIQKLLGHESIETTMKYV 304


>gi|317485379|ref|ZP_07944258.1| phage integrase [Bilophila wadsworthia 3_1_6]
 gi|316923338|gb|EFV44545.1| phage integrase [Bilophila wadsworthia 3_1_6]
          Length = 389

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 30/223 (13%), Positives = 69/223 (30%), Gaps = 22/223 (9%)

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS-QPRL 194
            L  +  + +W +        P   V+      E  R  T  ++++        S +   
Sbjct: 171 VLNVIGRMIEWGLHPG-----PAPKVKLLPSNNERQRFLTPIELERLLDVLEILSCRVYR 225

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSI--KTQKTGTIITVELPDGFMKLLAMTPI 250
                +++G+R  +  R   Q +   N +  +  K  K    +   + +    ++ + P 
Sbjct: 226 IALISMHTGMRVGEVLRMRGQDVDFENRLIHVDGKMGKRAAFMDDTVINVLQSIVPVRP- 284

Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGVN---------KSAHGVRKFSATISADAG 301
             +  F      ++     +  F       G+N            H +R    +  A   
Sbjct: 285 -ADLVFTTAKGLQIRPNALTHTFTKAVNILGLNDGITDPRFKVVIHTLRHTFCSWLASQN 343

Query: 302 ATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSRRISSVV 343
              + +    G  ++   + Y K   D     +K   +I+S  
Sbjct: 344 VPLYTIGKLVGHTSLRSTQRYAKLSPDAKWDALKLIEKIASSA 386


>gi|163844538|ref|YP_001622193.1| hypothetical protein BSUIS_B0367 [Brucella suis ATCC 23445]
 gi|163675261|gb|ABY39371.1| Hypothetical protein, conserved [Brucella suis ATCC 23445]
          Length = 402

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 48/312 (15%), Positives = 110/312 (35%), Gaps = 28/312 (8%)

Query: 49  SALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSG 107
           +A      ++    +  K   T      ++ +      ++  +R      +++ +  K G
Sbjct: 77  AAGKSPAKEKARDKARVKDAETFGAWAEKWLRGYQ---MSETTRNMRRGTYERDLKPKFG 133

Query: 108 DFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165
           +    +IT + +R+  ++   +  PS+A+     M ++F+WA+ +     NP   V    
Sbjct: 134 NRKLIEITHEDLRALTDAIVEQGRPSTAVVCREIMMLVFRWAIERGQKIENPADLVRPST 193

Query: 166 RKT--EGIRPWTKEDMQQFKSFWS-EGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQ-- 218
                   R  T E++     +    G+ P  R A + LL + +R S+   A    +   
Sbjct: 194 IAKFEPRDRALTPEEIGLMYQYMERIGTTPSIRAAAKLLLLTMVRKSELTNATWSEINFI 253

Query: 219 NNIFSIKTQ--KTGTIITVELPDGFMKLLAMTPI---GKETFFINNDKQ--KMNATQFSI 271
           + +++I  +  K      V L    +++         G E    +       M++   + 
Sbjct: 254 DALWTIPKERMKRRNPHLVFLSRQVLEIFTALKTFAGGSEYVLPSRYDSDLPMSSATLNQ 313

Query: 272 WFKAKATKAGVNKS------AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
                   A            H +R+ ++T+  +AG     +      +       Y K 
Sbjct: 314 VLTLTYRLAQKEGQSLGKFGPHDLRRTASTLLHEAGYNTDWIEKCLAHEQKGVRAVYNKA 373

Query: 326 --ADRIRLGIKN 335
              D+ R  +++
Sbjct: 374 EYRDQRRAMLQD 385


>gi|111020189|ref|YP_703161.1| transposase B [Rhodococcus jostii RHA1]
 gi|110819719|gb|ABG95003.1| possible transposase B [Rhodococcus jostii RHA1]
          Length = 696

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 50/315 (15%), Positives = 92/315 (29%), Gaps = 52/315 (16%)

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLA-----VNSRISFESYFDQI-IRKSGDFDYRKITTK 117
           P   P  ++ +I  Y +      L       N R +   + + + + +       ++   
Sbjct: 255 PEPCPPKIRAVIERYLQLRLDAKLDRPQTVHNVRQAMRRFVNWLGVHQPEITSLAQLDRA 314

Query: 118 HIRSGVE-------SRKHTPSSAIQFLTSMRVLFKWAVR---QEYVAINPCLSV----ER 163
            I   +             P S       +  +  +       E+  + P   +    + 
Sbjct: 315 TIEEYMRWLPTCPSQHTGQPLSTTTVKHELNAIAGFCRDTAVWEWAEV-PGRPLLTSRDT 373

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL--YSGLRCSDSCRAGVQHLQNN- 220
           P+R     R   + ++    +   + S P      LL  +SG R  +  R     L    
Sbjct: 374 PRRPESIPRYLPQHELDAIMTAIGDLSDPLQRAALLLLRWSGARRDEIRRLTWDCLDTYP 433

Query: 221 ----IFSIKTQKTGTIITVELPDGFMKLLA-----------------MTPIGKETFFINN 259
                  I   K  +   V L       L                  +T    +  FI  
Sbjct: 434 GGHPRLRIPVGKGHSERIVPLHPDAAAALDHAIGLARAQRSIARIDEVTGRRVDYVFIRR 493

Query: 260 DKQKMNATQFSIWFKAKATKAGV-------NKSAHGVRKFSATISADAGATAHELMATYG 312
            K     T F   F+      G+         SAH +R    T  A+ GA    +MA  G
Sbjct: 494 GKLLSVKTLFDEAFRTVCAATGLVDDRGAPTVSAHRLRHTLGTQLAEGGARIQTIMAILG 553

Query: 313 WKTVDQAETYTKGAD 327
            ++   +  Y++ +D
Sbjct: 554 HRSATMSMIYSRISD 568


>gi|325283713|ref|YP_004256254.1| integrase family protein [Deinococcus proteolyticus MRP]
 gi|324315522|gb|ADY26637.1| integrase family protein [Deinococcus proteolyticus MRP]
          Length = 399

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 52/362 (14%), Positives = 102/362 (28%), Gaps = 61/362 (16%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEY 78
           GK  +           L     +    A  +AL  +            + TT+   +   
Sbjct: 22  GKWQWRASIRLHSGETLRVAGTAPTKTAAEAALREAQTDASRGQFTVTQKTTVAEFL--- 78

Query: 79  RKSAHWGSLAVNS------RISFESYFDQIIRKSGDFDYRKITTKHIRSGV-------ES 125
               +W +L  ++      +         II   G      +T + +           E 
Sbjct: 79  ---LNWHALRADTLAAKYNQSQTSLIKKHIIPGIGKRTISSLTPRDLEVFYASLVHQDER 135

Query: 126 RKHTPSSA------IQFLTSMRVLFKWAVRQEYVAINPCL----SVERPKRKTEGIRPWT 175
           R  T           Q    + + F  AVR   +  NP         R   + + ++ WT
Sbjct: 136 RPDTFGQPLGDSMKRQVHNLLHLAFNDAVRHGELLRNPADTARPRYTRKAAQEDDLKAWT 195

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK---------- 225
            ++ ++F    + G +  +AF F+L +G+R  +      +++     +I           
Sbjct: 196 PDEARRFYEV-ARGDRRGVAFCFMLSTGMRMGEVLGLRWENVDLESGTIHIKEALVSLNG 254

Query: 226 ----------TQKTGTIITVELPDGFMKLLAMTP----------IGKETFFINNDKQKMN 265
                       K    ++ +      +     P          IG +  F +     + 
Sbjct: 255 HLHRTTPKTARSKRTLEVSGDALKILRERREQLPLEKEAAGERYIGSDAVFTSEVGTPIR 314

Query: 266 ATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
                   K     AGV  K  H +R    +I    G     + A  G       + + +
Sbjct: 315 PDNTYSLMKRLCQAAGVPYKGTHVLRHSFISIQGQQGLPVEVISAHVGHARASFTQDHYR 374

Query: 325 GA 326
             
Sbjct: 375 SV 376


>gi|291297146|ref|YP_003508544.1| integrase family protein [Meiothermus ruber DSM 1279]
 gi|290472105|gb|ADD29524.1| integrase family protein [Meiothermus ruber DSM 1279]
          Length = 387

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 94/289 (32%), Gaps = 39/289 (13%)

Query: 83  HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSM 140
           H    A N+R +++      +   GD   +K+T  ++R  ++    KH+P +  + L  +
Sbjct: 83  HTRGKAPNTRRNYQRELALALEHLGDIPLQKLTPHNLRRMLDRIGEKHSPRTLGKVLERV 142

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKR--KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEF 198
           R++ + A+  E +  +P  +V  P+   + +  +      ++    +      P +A   
Sbjct: 143 RLVLREALALELIHRDPSAAVRLPRASERDKAAQHLEPPQVRLLLEYAEASKSPTMALLL 202

Query: 199 --LLYSGLRCSDSCRAGVQHLQNNIFSIKTQK----------------TGTIITVELPDG 240
             L+  GLR  ++     + +     +++ ++                      + LP  
Sbjct: 203 RVLVQLGLRKGEALGLQWRDVDFKEATLRVERQYTLQGNKADIGPLKTRAARRVLPLPAD 262

Query: 241 FMKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK------ 284
            +  L             P   +  F+    + ++    + +      +   +       
Sbjct: 263 LLARLQARYEALCSEGFRPQDLQNAFVFGLDRPLDVNAPNHFLHRLVERIRADHPEFPEV 322

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLG 332
             H +R  +A++    G     +    G  T       Y       R  
Sbjct: 323 RIHDLRHTAASLMLARGLDLSLVADKLGHATPSVTLGVYRHLLQEERRA 371


>gi|89055391|ref|YP_510842.1| phage integrase [Jannaschia sp. CCS1]
 gi|88864940|gb|ABD55817.1| phage integrase [Jannaschia sp. CCS1]
          Length = 391

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 44/262 (16%), Positives = 88/262 (33%), Gaps = 21/262 (8%)

Query: 82  AHWGSLAVNSRISFESYFDQIIRKSG-----DFDYRKITTKHIRSGVE--SRKHTPSSAI 134
           A +  L   +        ++++              +I        ++  + +H   +A 
Sbjct: 115 ARFIELHAKAHTVKWRDTERLLDTYAVPAWRGKPIDQIDRAAAHELLDDIAMEHGTGAAR 174

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK-TEGIRPWTKEDMQQFKSFW-SEGSQP 192
           +    +  LF W+V +  +A +P   + RP+   T   R  T ++++   +     G   
Sbjct: 175 EVRKHITKLFNWSVDRGLLAASPVAGMRRPELGYTPRERVLTMDELRAVWAAAGKMGYPF 234

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ----KTGTIITVELPDGFMKLLAMT 248
                 L+ +  R ++        L  +  + +      KT     V L    + L+   
Sbjct: 235 GPMVRLLILTAQRRAEVANLERGWLLPDHQAFEVPASHYKTDRPQVVPLSAPALALVEGL 294

Query: 249 PI-GKETFFINNDKQKMNATQFSIWFKAKATKAGV----NKSAHGVRKFSATISADAGAT 303
           P      F ++    K   + FS   KAKA    +      + H +R+ +AT  A  G  
Sbjct: 295 PKWNSGDFMLSTTAGKRPVSGFS---KAKARLDKLSEVEGWTLHDLRRSAATHMARLGVA 351

Query: 304 AHELMATYGWKTVDQAETYTKG 325
              +    G      A TY + 
Sbjct: 352 QEHIERVLGHAIEGVAGTYNRY 373


>gi|308238067|emb|CBW37670.1| integrase [Streptococcus pneumoniae]
          Length = 395

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 59/364 (16%), Positives = 113/364 (31%), Gaps = 50/364 (13%)

Query: 6   RLPPFVTKERTRHGKIIYYFRKG-----------HGRRIRLPYPHESTFIPAYMSALTGS 54
           +   +    +   GKI +    G            GR+ +   P  S F  AY   L   
Sbjct: 5   KTKKYKGVYKDSKGKIYFQIELGVDPITGKKIQKKGRKNQQGLPFNS-FKEAYEEIL--- 60

Query: 55  TPKREYINSPRKKP-TTLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYR 112
             K E++NS       T +  + E Y K        V  + +   +    I++ G     
Sbjct: 61  RLKHEFVNSTINNSFLTFREFMEEIYLKYYQQKVQFVTYQTALPHH-QLFIKQFGSKKLS 119

Query: 113 KITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170
            I+T        +   K++ + A    +  +    +A R  Y+   P   +E P+ K   
Sbjct: 120 DISTIDCERFRLAIIDKYSSNYAKNMWSRFKACLGYAERLGYIDRVPFKGLENPRGKHPD 179

Query: 171 IRPWTKED----MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSI 224
            + WT ++    +  F     EG    +       +GLR S+      + +        +
Sbjct: 180 TKFWTFDEFKKVINSFDISEYEGLHNYMTIWLYFMTGLRVSEGIALKWEDIDFERKWIHV 239

Query: 225 --KTQKTGTIIT--------------VELPDGFMKLLAMT-----PIGKETFFINNDKQK 263
               +K    +               ++L D  + +L            + + I+     
Sbjct: 240 HSTIEKDKNGVWYAKQQTKTVAGNRKIDLDDFTITILKKWREVQIKNDDKDYVISRFGAP 299

Query: 264 MNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG-ATAHELMATYGWKTVDQA-E 320
           +  +  S   K  A   GV + +  G+R   A+   +        +    G         
Sbjct: 300 LCKSTISRIIKRHAKITGVPEITGKGLRHSHASYLINVLHKDTLYVSYRLGHADKSTTLN 359

Query: 321 TYTK 324
           TY+ 
Sbjct: 360 TYSH 363


>gi|288929355|ref|ZP_06423200.1| site-specific recombinase, phage integrase family [Prevotella sp.
           oral taxon 317 str. F0108]
 gi|288329457|gb|EFC68043.1| site-specific recombinase, phage integrase family [Prevotella sp.
           oral taxon 317 str. F0108]
          Length = 308

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 38/307 (12%), Positives = 99/307 (32%), Gaps = 39/307 (12%)

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDY--RKITTKHIRSGV 123
           K  T++ +   + KS     +  ++  ++    +  ++   GD +    K+  + +   +
Sbjct: 2   KAKTIREIALAW-KSEKQRYVKQSTYAAYVLILENHLLSSFGDCEVLSEKLVQEFVLQKL 60

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL-SVERPKRKT-EGIRPWTKEDMQQ 181
            +      +    L  +R++ K+ V+  ++  N C   ++ P  +    I   T    ++
Sbjct: 61  NA-GLCIKTVKDMLIVLRMVMKFGVKNGWM--NYCEWDIKYPTTEGNREIEVLTVAQHKK 117

Query: 182 FKSFWSEGSQPR-LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV----- 235
              F  +    R L     L +GLR  + C      +  +  +I   +T   I +     
Sbjct: 118 ILDFIRQNFTFRNLGIYISLTTGLRIGEICGLMWADINTDTGTITVNRTIERIYIIEGER 177

Query: 236 -------------------ELPDGFMKLLAMTP--IGKETFFINNDKQKMNATQFSIWFK 274
                               +    + ++      +    + + N+++      +  +F 
Sbjct: 178 KHTELVINTPKTKNSCREIPMNKELLAMVKPLKKVVNASFYVLTNEEKPTEPRTYRNYFH 237

Query: 275 AKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK-GADRIRL 331
                  + +   HG+R   AT   ++      +    G   +      Y     D+ + 
Sbjct: 238 RLMGHLDIPRLKYHGLRHSFATRCIESNCDYKTVSVLLGHANITTTLNLYVHPNMDQKKR 297

Query: 332 GIKNSRR 338
            I    +
Sbjct: 298 CITKMLK 304


>gi|257081591|ref|ZP_05575952.1| phage integrase [Enterococcus faecalis E1Sol]
 gi|256989621|gb|EEU76923.1| phage integrase [Enterococcus faecalis E1Sol]
          Length = 393

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 52/324 (16%), Positives = 102/324 (31%), Gaps = 60/324 (18%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132
           WL  EY+K+    +     R   +     I+   G     ++T K ++  V         
Sbjct: 77  WL-DEYKKTVRESTFIATERRMKK----HILPTFGKMRLERLTVKIVQKSVNEWYKKNEM 131

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR-----KTEGIRPWTKEDMQQFKSFWS 187
               L+    +  +AV  E +  NP   + +P       K    + +TK++++ F +   
Sbjct: 132 GKVLLSYASRVCDYAVGLEIIDSNPFKKITKPSSLKKIEKNTKRKFYTKDELEHFLNTAD 191

Query: 188 EGSQPR---------------LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
             +                    F  L ++G+R  ++       +      +   KT  I
Sbjct: 192 SIANQAKEESLVLKYYADLDCAIFRLLSFTGIRVGEALALNWNDIDLKKQVVNINKTTAI 251

Query: 233 IT--VELPDG--------------------------FMKLLAMTPIGKETFFINNDKQKM 264
            T  + + D                              L+       +  F   D    
Sbjct: 252 STNGLTINDPKTSNSIRKISFDNKTAYILKKWKLRQREALMKKGGFKTQLIFTKIDGTMF 311

Query: 265 NATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADA-GATAHELMATYGWKTVDQA-E 320
            +       K  A KA ++ S   HG R   AT+  ++    +  +    G  ++    +
Sbjct: 312 RSQDIYQRSKRLAEKANLH-SIGCHGFRHTHATLLFESDNVRSKIIQERLGHSSLQITMD 370

Query: 321 TYTKGADRIRLGIKNSRRISSVVD 344
           TYT  +D   +  + +   SS V+
Sbjct: 371 TYTHVSD--EVTKEATDAFSSYVN 392


>gi|319956948|ref|YP_004168211.1| integrase family protein [Nitratifractor salsuginis DSM 16511]
 gi|319419352|gb|ADV46462.1| integrase family protein [Nitratifractor salsuginis DSM 16511]
          Length = 365

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 49/348 (14%), Positives = 109/348 (31%), Gaps = 36/348 (10%)

Query: 16  TRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKRE-------YINSPRKKP 68
            R  ++   +     R+ +     ++     Y+        +R              + P
Sbjct: 6   KRGSRLYLQYTVNGKRKQKSTGLDDTPANRKYLRERVIPELERRIESGALAEEARRDEIP 65

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE--SR 126
             L    ++Y +S       + +         ++  +    D  KIT   +R       +
Sbjct: 66  KALSHYAAKYLESKE----HLKTYWELLQMVKRVEAEFKSTDVDKITRGMVRDWAMGLLK 121

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR--KTEGIRPWTKEDMQQFKS 184
             +P++  +++  +  + + A   E + +NP   ++ P +   T    P++ E++     
Sbjct: 122 TISPTTTRKYVNVLGGILEMAKDYEAIQVNPATGIKLPGKTAPTRNRTPFSTEEVALILE 181

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-----------FSIKTQKTGTII 233
             +   +  LA     Y+G R  +      + +                 + T KT   +
Sbjct: 182 SAAGWFRNYLA--VAFYTGARPGEILAIKPEDIDLKRRVIRIERNIRHGKVTTPKTAYSV 239

Query: 234 T-VELPDGFMKLLAMTPIG-KETFFINNDKQKMN--ATQFSIWFKAKATKAGVN-KSAHG 288
             V + D  +  L    +   E  F +      N        W      + G+  +  + 
Sbjct: 240 RSVPILDPLLPYLRGQLMQAGEWLFESPRGGHYNGARKVMYHWQNLM-ERLGIEYRDLYT 298

Query: 289 VRKFSATISADAG-ATAHELMATYGWKTVDQA-ETYTKGADRIRLGIK 334
            R    T    +G  +  EL    G K   Q  ++Y +  +   L I 
Sbjct: 299 TRHTFITHMLMSGELSVLELAQIVGHKNAQQIMQSYARFINEQHLKIS 346


>gi|315160859|gb|EFU04876.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0645]
          Length = 286

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 37/240 (15%), Positives = 76/240 (31%), Gaps = 29/240 (12%)

Query: 109 FDYRKITTKHIRSGVESRKHTPSSA--IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
              + I   HI+           +          ++    AV    ++ NP   V   K+
Sbjct: 1   MKLKSIAPVHIQKWQNELLEQYENTYVRNIYGLFQMSLDRAVVLGMISSNPAKIVGNVKK 60

Query: 167 KTEGIRPWTKEDMQQ----FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222
             + I  WTKE+ ++    F   +   +   +    L  +G+R  ++     + +  +  
Sbjct: 61  SKKEIDFWTKEEFEKVIKTFYIEYYYQNFSFICIWLLFMTGMRIGEATALTWKDVNLDGR 120

Query: 223 SIKTQKT-----------------GTIITVELPDGFMKLLAMTP-----IGKETFFINND 260
            +  +K+                  +I T+ L +  +  L         +G   F ++ +
Sbjct: 121 YLTVKKSLYYKNAQTYEFVSPKTRASIRTIYLDEDTVHYLRDWKKRQDDVGGIEFVLSYN 180

Query: 261 KQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
                        K  A  AGV +   H +R   A++    G  A  +    G + V   
Sbjct: 181 SVPTQKHTVRHIIKRHAKLAGVHDIRIHALRHSHASLLISMGTNALLIKERLGHEDVQTT 240


>gi|299145868|ref|ZP_07038936.1| integrase [Bacteroides sp. 3_1_23]
 gi|298516359|gb|EFI40240.1| integrase [Bacteroides sp. 3_1_23]
          Length = 379

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 45/251 (17%), Positives = 88/251 (35%), Gaps = 18/251 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT---PSSAIQFLTSMR 141
             +  +++   +     +       D+  I  ++IR+  E  K      SS   +   ++
Sbjct: 119 RQVTDSTKQRQKCVLKALKEFGRIKDFTDICDENIRAYDEFAKKRCKCQSSVYNYHKILK 178

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS---QPRLAFEF 198
           V  + A     ++ NP  + +  + K    R  TKE++ + ++   +     + R  F F
Sbjct: 179 VFVREAYAAHLISENPYQNFKLDRGKRVARRFLTKEELVKLETKQIDDMCLNRVRDLFLF 238

Query: 199 LLYSGLRCSDSCRAGVQH--LQNNIFSIKTQ--KTGTIITVELPDGFMKLLAMTPIGKET 254
             Y+GL  +D      +   + + ++ I+ +  KTGT   + L D  M +L      K  
Sbjct: 239 CCYTGLAYADLAIFNFKDAIMTDGMYRIRDERIKTGTPYNISLMDKVMNILKKY-EFKLP 297

Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADA-GATAHELMATYGW 313
              N          +     A         ++H  R   AT  A A G     +    G 
Sbjct: 298 VISNQK-----YNSYLKILGAFCEIKK-KLTSHVARHTFATTVALANGVRIEVISKMLGH 351

Query: 314 KTVDQAETYTK 324
             +   + Y  
Sbjct: 352 TNIQTTQLYAH 362


>gi|269140087|ref|YP_003296788.1| putative integrase [Edwardsiella tarda EIB202]
 gi|267985748|gb|ACY85577.1| putative integrase [Edwardsiella tarda EIB202]
          Length = 398

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 57/342 (16%), Positives = 115/342 (33%), Gaps = 39/342 (11%)

Query: 19  GKIIYYFRK-----------GHGRRIRLPYPHESTFIPAYMSALTGST-PKREYINSPRK 66
           GK ++ FR            G G    L           Y++ L     P+ +   +  +
Sbjct: 39  GKKLWRFRYQRPATKQRTMMGLGAFPALSLADARGLRADYLALLANEIDPQIQAEVAEEQ 98

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNS------RISFESYFDQIIRKSGDFDYRKITTKHIR 120
           +   L  + S    +A+W  L   S      +  + S    +    G+   ++I  + + 
Sbjct: 99  QQIALDSIFST--VAANWFQLKSKSVTPEYAKDIWRSLEKDVFPAIGELPVQQIKARILV 156

Query: 121 SGVESRKHTPS--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP--KRKTEGIRPWTK 176
             +E  K   +  +  + +  +  +  +AV    +  NP   V     K K + +     
Sbjct: 157 EALEPIKARGALETVRRLVQRINEIMIYAVNTGLIDTNPASGVGMAFEKPKKQNMPTLRP 216

Query: 177 EDMQQFKSFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKT 229
           E++ +        +     R   E+ L + +R S++  A    +  +           K 
Sbjct: 217 EELPKLMRSLVMSNLSVPTRCLIEWQLLTLVRPSEASGARWSEIDLDAKLWTIPAERMKA 276

Query: 230 GTIITVELPDGFMKLLAMTP---IGKETFFI--NNDKQKMNATQFSIWFKAKATKAGVNK 284
                V L    + +L +       +E  F   N+ KQ MN+   +   K      G   
Sbjct: 277 KREHIVPLSTQALDILEVMKPISAHREHVFPSRNDPKQPMNSQTANAALKRIGY--GGKL 334

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAET-YTKG 325
            AHG+R  ++T   +AG  +  + A       ++    Y + 
Sbjct: 335 VAHGLRSIASTSMNEAGFNSDVIEAALAHIDKNEVRRAYNRS 376


>gi|225017445|ref|ZP_03706637.1| hypothetical protein CLOSTMETH_01371 [Clostridium methylpentosum
           DSM 5476]
 gi|224949855|gb|EEG31064.1| hypothetical protein CLOSTMETH_01371 [Clostridium methylpentosum
           DSM 5476]
          Length = 440

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 43/368 (11%), Positives = 102/368 (27%), Gaps = 55/368 (14%)

Query: 6   RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
           R P ++   +   G   +     +     +        +    ++   ++P      +  
Sbjct: 49  RKPKWIPTHKKVKGNKTW----ANNMLPTIRKEWTEKLLQEATASQQSASPSGPSSAAIS 104

Query: 66  KKPTTLKWLISEYR-KSAHWGSLAV---NSRISFESYFDQIIRKS---GDFDYRKITTKH 118
                 +WL  +Y+  +           ++   +E   +  I             +T + 
Sbjct: 105 FVDFLYQWLEYKYKSATGRVMDSKPIELSTYSGYEQQLNNPIAPYFREHPVALCDLTKQD 164

Query: 119 IRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT-EGIRPWT 175
           I +  E    +  P++   +   +     +AV +  +  NP   +   K +  +G     
Sbjct: 165 ILAFYEKELERVKPTTVKHYHALIHGALNYAVDKNLIPSNPADRIIISKPEPFKGDYYLD 224

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ------------------HL 217
            E +  F+    +G +  L      + GLR S+                         ++
Sbjct: 225 SEVLNLFEVI--KGHKIELVVLLTAFYGLRRSEVIGLKWSAFDFNHNCFSIRHTVTTCNV 282

Query: 218 QNNIFSIKTQK---TGTIITVELPDGFMKLLAMTPIGKE----------------TFFIN 258
           +    +IK  K     ++ T  L     + L      +E                   ++
Sbjct: 283 KGERVTIKKDKAKNKSSLRTYPLIPFLKERLLEAKKQQEENRKLCGRAYNKEYLGYVCVD 342

Query: 259 NDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD 317
                +     S  F     K  +     H +R   A++    G    ++    G   + 
Sbjct: 343 VIGNLIKPNYVSSTFGKLLAKNNLRHIRFHDLRHTCASLLLANGVPMEQVKEWLGHSEIS 402

Query: 318 -QAETYTK 324
              + Y  
Sbjct: 403 TTVDIYGH 410


>gi|167574310|ref|ZP_02367184.1| phage integrase family protein [Burkholderia oklahomensis C6786]
          Length = 359

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 43/258 (16%), Positives = 77/258 (29%), Gaps = 26/258 (10%)

Query: 92  RISFE---SYFDQIIRKSGDFDYRKITTKHIRSGVE---------SRKHTPSSAIQFLTS 139
           +  +     +      + G    R +T + I   +          +R   P +  +++ +
Sbjct: 75  QRDYAGKLRHVLYWREQFGATPVRLLTAERIFDALPTHKMVNGKPARPLAPGTRNRYINT 134

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199
           +R L    V  E++   P L   R   + +    W   ++             R A    
Sbjct: 135 IRRLLNLCVEWEWLGRTPKL---RRFEEPDVRVRWETPEVIMTMINALRLPWMRDAAIVA 191

Query: 200 LYSGLRCSDSCRAGVQHLQ----NNIFSIKTQKTGTIITVELP-DGFMKLLAMTPIGKET 254
           + +G+R S+     V  +     N   +    K+     V L  D    L        + 
Sbjct: 192 VATGMRESELFGLRVSQIDLAQRNAWITHAEAKSKRARAVPLNQDAISVLEQRMRTATDL 251

Query: 255 FFINN----DKQKMNATQFSIW-FKAKATKAG-VNKSAHGVRKFSATISADAGATAHELM 308
            F       D       Q     F      AG V+   H +R   A+     G     L 
Sbjct: 252 VFTREYTRGDGPPKLIRQIDKRDFARACRVAGMVDFHWHDLRHTWASWHVQRGTPLMVLK 311

Query: 309 ATYGWKTVDQAETYTKGA 326
              GW+T+   + Y   A
Sbjct: 312 ELGGWETIAMVQKYAHLA 329


>gi|148265141|ref|YP_001231847.1| phage integrase family protein [Geobacter uraniireducens Rf4]
 gi|146398641|gb|ABQ27274.1| phage integrase family protein [Geobacter uraniireducens Rf4]
          Length = 290

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 42/271 (15%), Positives = 84/271 (30%), Gaps = 31/271 (11%)

Query: 78  YRKSA---HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HTPSS 132
           Y +S        LA  S+  +      ++    D     I+ + ++     R+     SS
Sbjct: 6   YERSMKALQLAGLAEGSQQCYTRAVRMLVLFY-DKTPDLISEEELQEYFLHRRNVDKWSS 64

Query: 133 AIQFLT--SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
               +   ++R  F+  +R+++          + +R  +     ++E++ +  S      
Sbjct: 65  GTLRICYCAIRFFFEKVLRRDW----HIFGYLKAERSKKLPAVLSQEEIARILS-CVRTP 119

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLLA-- 246
             R     +   GLR  +     V  + ++     +   K      V LP   + +L   
Sbjct: 120 HNRAYLFTVYSCGLRLQEGLHLEVGDIDSDRMLIHVHRGKGAKDRMVPLPPPTLAVLREH 179

Query: 247 ----MTPIGKETFFINNDKQKMNATQ------FSIWFKAKATKAGVNKS---AHGVRKFS 293
                 P          DKQ   A             K    +AG+ K     H +R   
Sbjct: 180 WKSHKNPRPIFPALGCGDKQGATAESPLAITTVVGAMKDAVRQAGITKRSVHIHTLRH-Y 238

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324
           AT   + G     +    G  +++    Y  
Sbjct: 239 ATHLLEEGVNLRVIQRYLGHSSIETTMVYLH 269


>gi|261879822|ref|ZP_06006249.1| integrase [Prevotella bergensis DSM 17361]
 gi|270333480|gb|EFA44266.1| integrase [Prevotella bergensis DSM 17361]
          Length = 407

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 43/266 (16%), Positives = 89/266 (33%), Gaps = 32/266 (12%)

Query: 88  AVNSRISF---ESYFDQIIRKS---GDFDYRKITTKHIRSG----VESRKHTPSSAIQFL 137
           +  +   +   E +F + ++++    D    ++T   IR             P++A + +
Sbjct: 129 SSATLQKYNVCERHFREFLQRNYKRSDIKLSELTYTVIREFDIYLRTVVGQNPNTATKTM 188

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ---PRL 194
            + + +     +   +  +P L+  R   +       T E++ +  +      +    R 
Sbjct: 189 KTFKTITILGQKMGVLYHDPFLN-HRFHLEPVNRGFLTDEEIMKIANKEISIQRLELVRD 247

Query: 195 AFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDGFMKLLAMTP- 249
            F F  ++GL   D       ++           K QKT     V L D    ++A    
Sbjct: 248 VFIFSCFTGLAYIDVSNLTPDNIVTLDDKQWIMTKRQKTSVETNVLLLDIPKNIIAKYSH 307

Query: 250 ----IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGAT 303
                GK    + N K        + + K  A   G+ K  + H  R   AT+S   G  
Sbjct: 308 KTYRDGKLFPILTNQKT-------NAYLKEIADLCGIKKNLTFHLARHTFATMSLSKGVP 360

Query: 304 AHELMATYGWKTVDQAETYTKGADRI 329
              +    G   +   + Y +  ++ 
Sbjct: 361 MESVSKMLGHTNIKTTQIYARITNKK 386


>gi|237711307|ref|ZP_04541788.1| tyrosine type site-specific recombinase [Bacteroides sp. 9_1_42FAA]
 gi|325299619|ref|YP_004259536.1| integrase family protein [Bacteroides salanitronis DSM 18170]
 gi|229454002|gb|EEO59723.1| tyrosine type site-specific recombinase [Bacteroides sp. 9_1_42FAA]
 gi|324319172|gb|ADY37063.1| integrase family protein [Bacteroides salanitronis DSM 18170]
          Length = 411

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 50/272 (18%), Positives = 99/272 (36%), Gaps = 29/272 (10%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQ------IIRKSGDFDYRKITTK---HIRSGVESR 126
            +Y K    G  A  +   +   +        I     D   +++T          + + 
Sbjct: 118 EDYEKQVEAGMKAKGTLEKYRIVYKHLQEFLDIRYHVKDIALKELTPAFISDFEMFLRTD 177

Query: 127 KHTPSSAIQFLTS-MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           KH  ++ +      +R +   A+  E++  +P    E  K +T      TKE+++     
Sbjct: 178 KHCCTNTVWLYVCPLRTMVFIAINNEWLTRDPFREYEIKKEETT-RSFLTKEEIRLLMEG 236

Query: 186 WSEGSQPRLAFEFLLY---SGLRCSDSCRAGVQHLQN-----NIFSIKTQKTGTIITVEL 237
             + ++  L  +  L+   +GL  SD      ++++         +I  QKTG +  + L
Sbjct: 237 KLKNAKQELYRDLYLFCAFTGLSFSDMRNLTEENIRTYFDEHEWININRQKTGVVSNIRL 296

Query: 238 PDGFMKLLAMTPIGKETFFINNDK--QKMNATQFSIWFKAKATKAGVNK--SAHGVRKFS 293
            D     +A   IGK      N +     +        +A A + G+ K  + H  R  +
Sbjct: 297 LD-----IANRIIGKYRGLCENGRIFPVPHYNTCLAGIRAVAKRCGITKHITWHQSRHTA 351

Query: 294 AT-ISADAGATAHELMATYGWKTVDQAETYTK 324
           AT +    G     + +  G K++   + Y K
Sbjct: 352 ATTVFLSNGVPIETVSSMLGHKSIKTTQIYAK 383


>gi|25011358|ref|NP_735753.1| hypothetical protein gbs1314 [Streptococcus agalactiae NEM316]
 gi|76787522|ref|YP_329938.1| phage integrase family site specific recombinase [Streptococcus
           agalactiae A909]
 gi|77407140|ref|ZP_00784133.1| site-specific recombinase, phage integrase family [Streptococcus
           agalactiae H36B]
 gi|24412896|emb|CAD46973.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76562579|gb|ABA45163.1| site-specific recombinase, phage integrase family [Streptococcus
           agalactiae A909]
 gi|77174250|gb|EAO77126.1| site-specific recombinase, phage integrase family [Streptococcus
           agalactiae H36B]
          Length = 393

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 61/326 (18%), Positives = 106/326 (32%), Gaps = 43/326 (13%)

Query: 8   PPFVTKERTRHGKIIY----YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63
             +    R + G+I Y          G+R R    ++  F   + S              
Sbjct: 4   KKYRGVSRDKQGRIYYQTEFKANNITGKRQR-KKSYKDQFGNPFRSEKQAYDELCRVRVE 62

Query: 64  PRKKPT------TLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT 116
            + K        +    + E Y         AV  R +   +    +   G     +I  
Sbjct: 63  FQTKDNNDGYYLSFSQYMEEVYLPYYKQTVQAVTYRTALTHH-KMFVEIFGSKRLSEIDV 121

Query: 117 KHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
           +           K++P+ A       +    +A R  Y+   PC S++ PK K    + W
Sbjct: 122 RECEKFRIYLIEKYSPNYAKGVWIRFKHCIGYAERLGYIDEFPCKSLDNPKGKRPDTKFW 181

Query: 175 TKEDMQQ----FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ------------ 218
           T ED+++    F     E      A     ++GLR S+        +             
Sbjct: 182 TLEDLKKVVATFDLRDYEERHRFTAIWLYFFTGLRVSEGLSLIWSDIDFDKKLLHVQSTL 241

Query: 219 ----NNIFSIK-TQKTGTII-TVELPDGFMKLLAMTPI-----GKETFFINNDKQKMNAT 267
               N +F+ K   KT   I  +EL D  + +L          G +++ +    + +N  
Sbjct: 242 EYEGNGVFTRKNPTKTSAGIRWIELDDETLNVLLRWRSIQVENGDDSYVLARFGKPLNKC 301

Query: 268 QFSIWFKAKATKAGVNK-SAHGVRKF 292
             S   K +A KAGV   +  G+R  
Sbjct: 302 TLSRILKRQAKKAGVEVITGKGLRHS 327


>gi|323485599|ref|ZP_08090940.1| site-specific recombinase XerD [Clostridium symbiosum WAL-14163]
 gi|323401069|gb|EGA93426.1| site-specific recombinase XerD [Clostridium symbiosum WAL-14163]
          Length = 317

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 42/292 (14%), Positives = 93/292 (31%), Gaps = 39/292 (13%)

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRK 127
            T+  L   ++ S  +  +  ++   + +     I    G  +  ++  + +   +  R+
Sbjct: 15  HTISHLCEAWKLSMRYQ-VKPSTFACYATIIQKHIRPSIGTVEMEEMNNEILSEFILDRQ 73

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE--RPKRKTEGIRPWTKEDMQQFKSF 185
               SA      + +L       E   ++P   ++   PK +   ++  ++++ ++  S 
Sbjct: 74  SRGLSANTMRLILFLLKSIIRAGERRGVSPAEPLDFFLPKDRGYEMKLLSQDNRRKLLS- 132

Query: 186 WSEGSQPRLAFEFLLYSG----LRCSDSCRAGVQHLQ--NNIFSIKTQ------------ 227
           W  G   R  FE  L       +R  + C    + +     +  I+              
Sbjct: 133 WLAGC--RTNFELGLLLSLSTGIRVGELCGVKWEDVDLEEGVLHIRRTVSRIRNTDQKNT 190

Query: 228 -----------KTG-TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKA 275
                      KTG +   + LPD  +  L         + +      M        FK 
Sbjct: 191 AAKTVLYIGSPKTGTSQREIPLPDFMIPRLKEKKREAGCYLLTGRTGCMEPRGVQRRFKN 250

Query: 276 KATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKG 325
              K  + + + H +R   A+   + G  +  L    G  +V    + Y   
Sbjct: 251 LLRKLRLPDVNIHALRHSFASQWIENGFDSKSLSEILGHSSVKITMDIYVHS 302


>gi|320654613|gb|EFX22618.1| putative integrase; DLP12 prophage [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
          Length = 387

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 42/265 (15%), Positives = 95/265 (35%), Gaps = 35/265 (13%)

Query: 112 RKITTKHIRSGVESRKHTP---------SSAIQFLTSMRVLFKWA-VRQEYVAINPCLSV 161
           ++I  + +++ +   K  P          +  + L  ++ + + A    +++   P   +
Sbjct: 116 KEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPV--I 173

Query: 162 ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN- 220
           + P  + + +R   KE+ ++      E  +  + F     +GLR S+      Q +    
Sbjct: 174 KIPAVRNKRVRWLEKEEAKRLIDECPEPLKSVVKFALA--TGLRKSNIINLEWQQIDMQR 231

Query: 221 ---IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK-------------QKM 264
                + +  K+   I V L D   K+L         +   + K             +KM
Sbjct: 232 RVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKM 291

Query: 265 NATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
                + W      +AG+ +   H +R   A+    +G     L    GW++++    Y 
Sbjct: 292 RIDSKTSWLS-ACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYA 350

Query: 324 KGADRIRLGIKNSRRISSVVDSDDP 348
             A       +++R+I  +   + P
Sbjct: 351 HLAPNHL--TEHARKIDDIFGDNVP 373


>gi|296163718|ref|ZP_06846432.1| integrase family protein [Burkholderia sp. Ch1-1]
 gi|295886039|gb|EFG65943.1| integrase family protein [Burkholderia sp. Ch1-1]
          Length = 335

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 46/290 (15%), Positives = 93/290 (32%), Gaps = 40/290 (13%)

Query: 71  LKWLISEYRKSA--HWGSLAVNSRISFESYFDQIIRKSGD---FDYRKITTKHIRSGV-- 123
              LI ++         +++  +  S+   F  +   + +       K+      + +  
Sbjct: 10  FSTLIQQFFMDRLIEQRNVSPRTVASYRDTFRLLFSFAENDLNKPPHKLRLVDFNAELIL 69

Query: 124 -------ESRKHTPSSAIQFLTSMRVLFKWAVRQEY-----VAINPCLSVERPKRKTEGI 171
                   +R +   S    L ++R    +A  QE      +     + ++R  R   G 
Sbjct: 70  AFLKYLETTRHNAIRSRNARLAAIRSFAHYAALQEPSALPGLQRVLAIPMKRFDRPMVGF 129

Query: 172 RPWTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT- 226
              ++E+MQ   +  +     G + ++    L  +G R S+     V+ +  +  +    
Sbjct: 130 --LSREEMQCILAAPAANSWCGQRDQVMLATLYNTGARVSELIAMRVRDVVLDRGACANL 187

Query: 227 -QKTGTIITVELPDGFMKLLAMT-----PIGKETFFINNDKQKMNATQFSIWFKAKATKA 280
             K     TV L  G  K +        P   +  F N    +M  +  +   K  AT A
Sbjct: 188 HGKGRKERTVPLWAGTAKQIRRWLHQINPDPDQWLFPNRAGGQMTRSGVTDRLKVAATGA 247

Query: 281 GVNK--------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
            +          + H VR  +A     AG     +    G ++      Y
Sbjct: 248 SIRCPQLKTRSVTPHIVRHATAMHMLQAGVDVTLIALWLGHESAATTHMY 297


>gi|290476895|ref|YP_003469806.1| Phage integrase [Xenorhabdus bovienii SS-2004]
 gi|289176239|emb|CBJ83044.1| Phage integrase [Xenorhabdus bovienii SS-2004]
          Length = 369

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 50/336 (14%), Positives = 111/336 (33%), Gaps = 49/336 (14%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEY 78
           GK IY   +  G++              + +       +         +  T+  L+ +Y
Sbjct: 28  GKYIYRENRTFGKQSHAKT---------WGAMRVAELEQNGVPTQNDTEELTVGELLYKY 78

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIR---SGVESRKHTPSSAI 134
               + G  A  ++       + ++          +++  HI        S   TPS+  
Sbjct: 79  INDPNLGVKAGRTKK---YVLNMLLDSDLAKLTLTELSVSHIIEYCKQRHSTGITPSTIN 135

Query: 135 QFLTSMRVLFKWAVRQEYVA--INPCLSVERP--------KRKTEGIRPWTKEDMQQFKS 184
             ++ +  + K A     +    NP               K +    RP  ++++     
Sbjct: 136 HDVSYLTSVLKSAKPIYNIDYVSNPAYEARPLLIQMGLIGKSQRRSRRP-VQDEIDNLIE 194

Query: 185 FWSEGSQPR-------LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-------KTG 230
              + S  R           F + S +R  + C+     +     S+  +       KTG
Sbjct: 195 GLRKRSSHREGKIPYEDILNFSILSCMRIGEVCKIRWDDIDEKQRSVIVRDRKDPRKKTG 254

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGV 289
             ++V L     +++   P   E  F        N+   ++ F+      G+ +   H +
Sbjct: 255 NHMSVPLLGNAWEIVQRQPKTSEWIF------PYNSKSVTVGFQCVRNALGIQDLRYHDL 308

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
           R+  A+   +AG +  E+    G ++++   + YT+
Sbjct: 309 RREGASRLFEAGFSIEEVAQVTGHRSLNVLWQVYTE 344


>gi|240119339|dbj|BAH79203.1| predicted integrase [Escherichia coli O157:H7]
          Length = 402

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 55/370 (14%), Positives = 112/370 (30%), Gaps = 31/370 (8%)

Query: 7   LPPFVTKERTRHGKIIYYFR-----------KGHGRRIRLPYPHESTFIPAYMSALTGST 55
           L P +      +G   + FR            G    I L    +       + A     
Sbjct: 27  LTPGLFLLVHPNGSKYWRFRYWIDKKERLQAIGVYPLISLKEARKRATESRLLIAQGIDP 86

Query: 56  ---PKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDY 111
               ++E          + K +  ++  +      + +      S  ++ +    G    
Sbjct: 87  MDLARKEKAIDALNAIASFKAVAEDWMAT-KVSGWSESYTKQVRSALEKDVYPVLGKRSI 145

Query: 112 RKITTKHIRSGVESRKHT-PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE-RPKRKTE 169
             IT + + + ++ ++ T P  A +    +  +FK+AV  E V  NP   ++   K +  
Sbjct: 146 VDITARDVLALLQKKERTAPEQARKLRQRIGEIFKFAVITELVNRNPVADLDTALKARRP 205

Query: 170 GIRPW-TKEDMQQFKSFWSEGS--QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK- 225
           G   W    ++  F          Q + A   L+ S LR ++      + +     +I  
Sbjct: 206 GHNAWIPINEIPAFYKALERAGSVQIQTAIRLLILSALRTAELRLMRWEWVDLESATITL 265

Query: 226 ---TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
                K      V L    ++LL                + M+    +        + G 
Sbjct: 266 PAEVMKARRPHVVPLSRQAVELLQDQFTRSGYSAFVFPGRFMDKPLSASAILKALERIGY 325

Query: 283 N--KSAHGVRKFSATISADAGA-TAHELMATYGWKTVDQAETYTKGA---DRIRLGIKNS 336
               + HG R   +T   ++G  +   +              Y + A    R  +    +
Sbjct: 326 KSIATGHGWRTTFSTALNESGRYSPDWIEIQLAHVPKGVRGVYNQAAYLKQRRAMMQDYA 385

Query: 337 RRISSVVDSD 346
             I S++  D
Sbjct: 386 DAIDSILAGD 395


>gi|229547242|ref|ZP_04435967.1| bacteriophage integrase [Enterococcus faecalis TX1322]
 gi|256854683|ref|ZP_05560047.1| conserved hypothetical protein [Enterococcus faecalis T8]
 gi|229307639|gb|EEN73626.1| bacteriophage integrase [Enterococcus faecalis TX1322]
 gi|256710243|gb|EEU25287.1| conserved hypothetical protein [Enterococcus faecalis T8]
 gi|315030632|gb|EFT42564.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX4000]
          Length = 309

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 44/288 (15%), Positives = 90/288 (31%), Gaps = 44/288 (15%)

Query: 73  WLISEYRKSAHWGSL------AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
            L  EY   + W  L         S   +      +   +     + +  +  +  +   
Sbjct: 9   QLFHEYF--SEWVELYKVGAIRDISLQKYYIAEQWLAELAPGLKVKHLDRQRYQQLLNDY 66

Query: 127 KHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV----ERPKRKTEGIRPWTKEDMQ 180
             T    + + F   ++     AV +  ++ NP   +    + P+ K        + ++Q
Sbjct: 67  ALTHERQTTMDFHHQLKGAILDAVDEGLISKNPTRKIVIKGKAPRPKKSKF--LNQFEVQ 124

Query: 181 QFKSFWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSIKTQKT--------- 229
                   G Q    +  LL   +GLR S++     +    +   I  +KT         
Sbjct: 125 ALLKELELGEQLNWDWFILLVVKTGLRFSEALALTPKDFDFSKQKITIEKTWNYKNPTGF 184

Query: 230 -----------GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKAT 278
                         I  +    F +L+   P  +  F      +  N+T  +   K    
Sbjct: 185 FQSTKNESSKRKVQIDWQTAMQFSQLIRNMPPMEPIFV---KGRVFNST-INNRLKVLCK 240

Query: 279 KAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
           +A +   + H +R   A++   AG +   +    G  ++    ETY  
Sbjct: 241 RAQIPVITVHSLRHTHASLLLFAGVSIASVATRLGHSSMTTTQETYLH 288


>gi|212710850|ref|ZP_03318978.1| hypothetical protein PROVALCAL_01918 [Providencia alcalifaciens DSM
           30120]
 gi|212686547|gb|EEB46075.1| hypothetical protein PROVALCAL_01918 [Providencia alcalifaciens DSM
           30120]
          Length = 407

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 50/303 (16%), Positives = 111/303 (36%), Gaps = 29/303 (9%)

Query: 54  STPKREYINSPRKKPTT-LKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDY 111
           S   ++      ++  T L+    +Y +   + +   ++R   E+   + I    G    
Sbjct: 87  SPASQKRDGIDSRRSGTVLQDYTVKYLEDTRFAN---STRAMKEAIVRKEIYPTLGKLQL 143

Query: 112 RKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT- 168
            +ITT+ +R+  E  K     ++A+Q    +  +F + + + Y   NP  S++     T 
Sbjct: 144 EEITTQKVRALCEKIKDRGARATALQVREIIGSVFNYVIDRGYEIKNPVDSIKASSIATF 203

Query: 169 -EGIRPWTKEDMQQFKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
               R  + +++  F +     S     +L  +F+L++ +R S+  +A    +       
Sbjct: 204 EARERSLSPKEIGIFFNELENYSCYPTLKLGVKFVLFTLVRKSEFIKAKWDEINFETKEW 263

Query: 225 K----TQKTGTIITVELPDGFMKLLAMTPI---GKETFFINND--KQKMNATQFSIWFK- 274
                  K      + L D  M +L        G E          + ++    +     
Sbjct: 264 TIPKERMKKRRAHVIYLSDQAMDILIGLKTCAMGSEYLIPGRHDINKHLSNAALNNVITG 323

Query: 275 --AKATKAGV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG--AD 327
              K  K G+   + + H +R+ ++T+  +AG  +  +      +       Y K   A+
Sbjct: 324 VVKKINKKGIEFEHVTVHDMRRTASTLLHEAGFNSDWIEKCLAHEQKGVRAVYNKAEYAE 383

Query: 328 RIR 330
           + R
Sbjct: 384 QRR 386


>gi|167621565|ref|YP_001672073.1| integrase family protein [Caulobacter sp. K31]
 gi|167351688|gb|ABZ74414.1| integrase family protein [Caulobacter sp. K31]
          Length = 268

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 65/178 (36%), Gaps = 13/178 (7%)

Query: 160 SVERPKRKTEGIRPWTKEDMQQFKSF-WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218
            +  P  +  G+   T E+  +F    +++G +  L  + LL +G R S+  +  ++ + 
Sbjct: 37  GLSAPPERRGGVDRLTVEEELRFLDRAYAQGGRTGLMLQTLLETGARASELVQLRIEDVS 96

Query: 219 --NNIFSIKTQKTGTIITVELPDGFMKLL--AMTPIGKETFFINNDKQK------MNATQ 268
               + +I+  K G    + +     +LL   +        F +  +        +   +
Sbjct: 97  LAERVVTIREGKGGKRREIPIRRDLAQLLQLHIGARRAGPLFASRQQGSGPTPHVLTRQR 156

Query: 269 FSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
                +  A  AG+ K    H +R   AT     G    +L    G +++     Y +
Sbjct: 157 IGQVVREVARDAGITKRVYPHLLRHTVATRLLALGMDITDLQRFLGHESITTTRLYAE 214


>gi|329963113|ref|ZP_08300893.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
 gi|328529154|gb|EGF56084.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
          Length = 343

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 42/260 (16%), Positives = 90/260 (34%), Gaps = 24/260 (9%)

Query: 89  VNSRISFESYFDQIIR--KSGDFDYRKITT---KHIRSGVESRKHTPSSAIQFLTSMRVL 143
            ++  ++ +     I+  K  D     I +         +     +  +   ++ S+R L
Sbjct: 54  HSTASNYRTAVRSFIKFNKGEDIPLVDINSTLMDSYGEWLLQNNVSKDTLSCYMRSLRAL 113

Query: 144 FKWAVRQEYVAI-NPCLSVERPKRKTEGIRPWTKEDMQQFK-SFWSEGSQPRLAFEFLLY 201
           +  AV++ YV   NP  +V     +T   R   KED+++ + +    GS  RL  +  L+
Sbjct: 114 YNKAVKKGYVQQCNPFSNVFTGISRTRK-RAIEKEDIRKLQQAVLPPGSFMRLVRDVFLF 172

Query: 202 S----GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF-- 255
                G+   D        L+    +    KT   + ++L     +++         +  
Sbjct: 173 CFYACGMPFIDVAFLKKSQLEGGFMTYNRHKTDQPVRIKLEPCMQEIINRYISNDREYVF 232

Query: 256 -FINNDKQKMNATQFSIWF-------KAKATKAGVNKSAHGV--RKFSATISADAGATAH 305
            F+++  + +   ++           K    K G+ +S      R   AT++  + A   
Sbjct: 233 PFLSSSDEDIAYKEYQQKMSYYNRTLKILGKKVGICRSLSSYVPRHTWATLAFRSAADLL 292

Query: 306 ELMATYGWKTVDQAETYTKG 325
            +    G         Y K 
Sbjct: 293 VISQALGHTDTKTTRIYVKD 312


>gi|298384311|ref|ZP_06993871.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           1_1_14]
 gi|298262590|gb|EFI05454.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           1_1_14]
          Length = 285

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 44/282 (15%), Positives = 94/282 (33%), Gaps = 27/282 (9%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           ++++++      +LA N+  S+       +   G+ + + +       G       P + 
Sbjct: 19  MVTKFKNHLAKTNLAKNTVTSYVWTVQYFLCHYGEVNKKNLLA---YKGYLVENFKPQTV 75

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI--RPWTKEDMQQFKSFWSEGSQ 191
              L  +    ++  +++         V+  K + +       +  D +  K+       
Sbjct: 76  NLRLQGINKYLEFTKQEKL-------KVKFVKVQQKNFLENVISDADYKFLKAQLKTDGY 128

Query: 192 PRLAFE--FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM----KLL 245
               F   F+  +G R S+      +H+Q     +   K G I  + +P        K L
Sbjct: 129 DEWYFIVWFMAATGARVSELLHIKAEHVQIGHLDL-YSKGGKIRRLYIPKNLRTEAAKWL 187

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGA 302
               +     F+N   Q++     +   K  A K G+NK     H  R   A    D   
Sbjct: 188 KEIGLTSGYIFLNRFGQRITTRGIASQLKHFAEKYGMNKEVVYPHSFRHRFAKNFLDRFN 247

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
               L    G ++++    Y +     R   +  + +  VV+
Sbjct: 248 DLALLADLMGHESIETTRIYLR-----RTASEQQKIVDKVVN 284


>gi|293377828|ref|ZP_06624013.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium PC4.1]
 gi|292643538|gb|EFF61663.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium PC4.1]
          Length = 407

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 50/354 (14%), Positives = 104/354 (29%), Gaps = 65/354 (18%)

Query: 31  RRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVN 90
           ++I             +   + G     EY      K  T++  + ++  +    ++   
Sbjct: 33  KKIHKKGFKSHEEAERFAKIVEGEIASEEYTQK-NPKNLTIEKFMDDWINNYK-MNVKEG 90

Query: 91  SRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESR-----------KHTPSSAIQFLT 138
           +RI   +     I    G +   K T    +  +                + ++A     
Sbjct: 91  TRIVHRANIKMYINPYIGKYKLDKYTRADHQRFINQLLTKKGLGRTKEGLSVTTAKSINA 150

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP--WTKEDMQQFKSFWSEGSQPRLAF 196
           ++   FK A++  Y+  NP   VE P+  ++  +   +T +  + F  F  +  +  + +
Sbjct: 151 TLSNAFKKAIQLGYIKNNPTSFVEFPRNPSDKKKVKYYTFDQSELFLEFAKK-EKSFIWY 209

Query: 197 EFLLYS---GLRCSDSCRAGVQHLQ---------------------NNIFSIKTQKTGTI 232
            F L     GLR S++       +                        +      KT + 
Sbjct: 210 PFFLIIFDQGLRKSEALGLQWADIDFSQNTLNINRERLGAAEKGPNKGLIITDDTKTPSG 269

Query: 233 IT-VELPDGFMKLLAMT-----------PIGKET---FFINNDKQK-------MNATQFS 270
              + +     K L              P   +     FIN   +              S
Sbjct: 270 TRSLPMTKRVKKALLTLRNQVIKEFGFLPETDDHEAFIFINTYGKNKGIPIRDRTVNGAS 329

Query: 271 IWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              + +A+    + + H  R   A  +  AG    ++    G K V   + Y  
Sbjct: 330 HRIEKRASL--PHITVHDGRHTFAARTRQAGIPLEDIKDFLGHKDVSTTQVYAH 381


>gi|226363472|ref|YP_002781254.1| tyrosine recombinase [Rhodococcus opacus B4]
 gi|226241961|dbj|BAH52309.1| putative tyrosine recombinase [Rhodococcus opacus B4]
          Length = 272

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 37/275 (13%), Positives = 79/275 (28%), Gaps = 10/275 (3%)

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
           +  P      + ++  +   G     +  +  ++  ++ R  G     ++    +     
Sbjct: 3   KSVPVGWVPYLDDFATALRAGGAPETTIGTRLNHLRRVARTFGAPSPLEVDGDQLTLWAG 62

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
            +  +  +   +  S+   ++W V       NP  ++ R        RP          +
Sbjct: 63  RQDWSIETRRGYRGSLLAFYRWMVGSGRATENPAAALPRVAPAKPKPRPAPDSVYAT--A 120

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN---NIFSIKTQKTGTIITVELPDGF 241
                 + R+        GLR ++      + L         +   K      + LPD  
Sbjct: 121 LMKATPRERVMLRLASECGLRRAEVALVHSRDLSEDLCGWSLVVHGKGRKDRVLPLPDEI 180

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAG 301
              L   P G    F  ND   ++                 + + H +R   AT +    
Sbjct: 181 AAELRRLPRGWA--FPGNDCGHLSPRWVGKLMTELLPD---DWTMHKLRHRFATRAYRNT 235

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
                +    G ++V   + YT   D       N+
Sbjct: 236 RNIRAVQQLLGHESVATTQVYTAVDDDELRAAMNA 270


>gi|237810288|ref|YP_002894739.1| integrase or site-specific recombinase [Burkholderia pseudomallei
           MSHR346]
 gi|254184156|ref|ZP_04890747.1| site-specific recombinase, phage integrase family [Burkholderia
           pseudomallei 1655]
 gi|184214688|gb|EDU11731.1| site-specific recombinase, phage integrase family [Burkholderia
           pseudomallei 1655]
 gi|237505133|gb|ACQ97451.1| integrase or site-specific recombinase [Burkholderia pseudomallei
           MSHR346]
          Length = 409

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 37/301 (12%), Positives = 90/301 (29%), Gaps = 22/301 (7%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWL--ISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSG 107
           + G           R    +L  +   +EY         +     +     ++ I    G
Sbjct: 81  VAGGVSPVADARKDRGAVKSLDTIHEFAEYWIEQQMMGKSAEYLRTTRRALEKDIYPAIG 140

Query: 108 DFDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV--ER 163
                 +T   + +  +  K    P  A+     ++ ++++A+ ++ V  NP  ++    
Sbjct: 141 GKSVSDVTPGDVLAICDRIKKRGAPKMALSTRNILKRIYEYAIARQLVTSNPAQAIVARF 200

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQPR---LAFEFLLYSGLRCSDSCRAGVQHLQNN 220
              +    R  +  ++ +        S  R   LA   L+ + +R S+   A       +
Sbjct: 201 VATQASRDRVLSPNEIGRVLRAVYASSIRRPLKLAIHLLVLTMVRKSELIEARWDEFDLD 260

Query: 221 IFSIK----TQKTGTIITVELPDGFMKLLA---MTPIGKETFFINNDK--QKMNATQFSI 271
               +      K      V L    + +L          +  F ++    + +  +  + 
Sbjct: 261 ASIWRIPAERMKKDREHWVYLAPQAVAMLRELHAIRTSHQYVFPSSRGADRPIAKSTLNQ 320

Query: 272 WFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG--ADRI 329
             +        +   H  R+ ++T   + G  +  +              Y +   AD  
Sbjct: 321 AVR-ALDMDVQHFVLHDFRRTASTHLHEMGQPSDAIEKALAHSIKGIKGVYNRAEYADER 379

Query: 330 R 330
           R
Sbjct: 380 R 380


>gi|148975049|ref|ZP_01812029.1| Integrase [Vibrionales bacterium SWAT-3]
 gi|145965558|gb|EDK30807.1| Integrase [Vibrionales bacterium SWAT-3]
          Length = 373

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 33/258 (12%), Positives = 76/258 (29%), Gaps = 34/258 (13%)

Query: 93  ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----------KHTPSSAIQFLTSMRV 142
                   + I   G+     +  +       +R          + +P++    L  ++ 
Sbjct: 111 KQARDLIAKTIEGLGNPIAYHLKERDYLDYRAARIPYRGKNKSIEISPTTHNLELIYLKG 170

Query: 143 LFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ------PRLA 195
           +FK  ++  ++   NP  ++E  +   + +   TK  +++F       ++      P+L 
Sbjct: 171 MFKKLIKYNQWKYPNPVEAIEPIRTSEKNLAYLTKPQIEEFLFNLKNFNRVITVSIPQLI 230

Query: 196 F--EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE 253
              +  L +G R S++       +     +    K     +V +       +    +   
Sbjct: 231 VISKICLATGARISEALTLTRSQVAEFKLTYTETKGKKNRSVPISPALYHEILDIAVSDH 290

Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGVNKSA-----HGVRKFSATISADAGATAHELM 308
             F    K                 +A  N        H +R   A+           L 
Sbjct: 291 KIFDTTYKDAW----------RYIKRALPNHVPSGQATHVLRHTFASHFMMNKGDILVLQ 340

Query: 309 ATYGWKTVDQAETYTKGA 326
              G   ++Q   Y+  A
Sbjct: 341 RILGHTKIEQTMAYSHFA 358


>gi|317012487|gb|ADU83095.1| integrase-recombinase protein [Helicobacter pylori Lithuania75]
          Length = 363

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 26/174 (14%), Positives = 64/174 (36%), Gaps = 15/174 (8%)

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIIT 234
           E + + +      ++ RL  + ++++G+R +++ +  ++    +N  ++I  +  G    
Sbjct: 186 ESIDKIEMSAKVRARNRLLIKIIVFTGMRSNEALQLKIKDFTLENGCYTILIKGKGDKYR 245

Query: 235 VELPDG------FMKLL---AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284
             +           + L    + P+  +  F N     +         +     AG+ + 
Sbjct: 246 AVMLKAFHIESLLKEWLIERVLYPVKNDLLFCNQKGSALTQAYLYKQVERIINFAGLRRE 305

Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
              AH +R   AT+          +    G  +++ +  YT   D+ RL    S
Sbjct: 306 KNGAHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTH-FDKERLEEAAS 358


>gi|289192574|ref|YP_003458515.1| integrase family protein [Methanocaldococcus sp. FS406-22]
 gi|288939024|gb|ADC69779.1| integrase family protein [Methanocaldococcus sp. FS406-22]
          Length = 326

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 42/323 (13%), Positives = 102/323 (31%), Gaps = 52/323 (16%)

Query: 56  PKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRIS----FESYFDQIIRKSGDFDY 111
           PKRE +    +    +K  +  +R+   +  +  ++  S       + D +  +      
Sbjct: 16  PKREKVEESPE----IKKWVDRFREEREFDGIKESTIRSDILRLRVFLDFVYNRLNKTPE 71

Query: 112 RKITTKHIR--SGVES-RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168
                  +R  + +E  RK + SS  ++   ++V ++      +              ++
Sbjct: 72  TMTNADFVRFFNYLEKERKVSRSSQDKYFKLLKVFYRLMRLNNFRE---------FAEES 122

Query: 169 EGIRPWTKEDMQQFKSFWSEGS----------------QPRLAFEFLLYSGLRCSDSCRA 212
           +  R ++K +++ + +  +                   +  L    L  +G R S+    
Sbjct: 123 KERRRFSKFEVKHYDAIDANALNLILEKMMESNSRMSIRNCLIVRLLWDTGARISEVLNL 182

Query: 213 GVQH--LQNNIFSIKTQKTGTIITVEL----PDGFMKLLAMTPIG--KETFFINNDKQKM 264
             +        F I   KT     V       +     +   P     +  F     +++
Sbjct: 183 KYKDCDFDEGTFRITNTKTHEERVVVCSSDTLEALRWYVQFNPRQNSDDYIFQTPKGERV 242

Query: 265 NATQFSIWFKAK----ATKAGVNKS----AHGVRKFSATISADAGATAHELMATYGWKTV 316
           +       FK        +  + K+     H +R   A    D G     +    G +++
Sbjct: 243 SKDTIYKVFKRAVDELKKEGKIPKNKRIVLHSLRHGRAVDLLDKGVPIDIVKEYLGHRSL 302

Query: 317 DQAETYTKGADRIRLGIKNSRRI 339
           D    Y+   +R    +K  +++
Sbjct: 303 DTTLYYSHSKERALKMLKTIKKL 325


>gi|262040238|ref|ZP_06013489.1| phage integrase family site-specific recombinase [Klebsiella
           pneumoniae subsp. rhinoscleromatis ATCC 13884]
 gi|259042347|gb|EEW43367.1| phage integrase family site-specific recombinase [Klebsiella
           pneumoniae subsp. rhinoscleromatis ATCC 13884]
          Length = 416

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 53/359 (14%), Positives = 122/359 (33%), Gaps = 39/359 (10%)

Query: 22  IYYFRKGHGRRIRLPYPHE----------STFIPAYMSALTGSTPKREYINSPRKKPT-- 69
            Y +R    R   +   +              I A      G +P     +  ++     
Sbjct: 38  RYDYRINGRRETLVIGQYGRDGITLAEARDELIAAKKLLNAGQSPAAAKRDGIKRIRGAE 97

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVES--R 126
           T       Y K      LA ++R   +S  D+ I+   G+    +ITT  +R   +    
Sbjct: 98  TFTVHTDAYMKHVV---LADSTRAMKQSVIDRDILPVLGNKMMSEITTPMVRDLCDRIVE 154

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK--TEGIRPWTKEDM-QQFK 183
           +   ++A+Q    +  ++++A  + +   NP   ++           R    E++   F+
Sbjct: 155 RGGRATAVQAREIISSVYRYANDRGHGLFNPAADIKPSAIAMFKPRDRCLQPEEIGVLFR 214

Query: 184 SFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIITVEL 237
           S  +  + P  +LA + +L + +R ++   A  + +  +  +        K      + L
Sbjct: 215 SLDTVSTLPTLKLAVKLILITMVRKTEFIMATWKEVDFSKGTWTIPSDRMKGSRSHVIYL 274

Query: 238 PDGFMKLLAMT---PIGKETFFINNDK--QKMNATQFSIWFKAKATKAGV------NKSA 286
           P     L+        G +          + ++    +         A          + 
Sbjct: 275 PPQAQDLMVGLQMCAGGSDYLLPGRYSTSKPLSNAALNSVIDRAVAAAVDAGESLQPLTV 334

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345
           H +R+ ++T+  +AG  +  +      +       Y K A+  R      ++ +++VD+
Sbjct: 335 HDLRRTASTLLHEAGFPSDWIEKALAHEQKGVRAVYNK-AEYSRQRAYMLQQWANMVDA 392


>gi|255307072|ref|ZP_05351243.1| integrase [Clostridium difficile ATCC 43255]
          Length = 370

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 44/292 (15%), Positives = 97/292 (33%), Gaps = 37/292 (12%)

Query: 86  SLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTSMRV 142
           ++++ +  ++ S   + I    G +  + +   HI++ ++    K  P S    +  +++
Sbjct: 78  NISLATYNNYVSICKNYINPSIGRYKIQDLHPVHIQNYIDKLSYKLNPQSIKIHINILKL 137

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202
             K A R + +  N   S+E P+ K      + +E M +        ++  L     +  
Sbjct: 138 AIKRAYRLKLIKENVMDSIEAPRYKKFKNEIYDREQMIKLLDLAK-NTEMELPINLAIGL 196

Query: 203 GLRCSDSCRAGVQHLQ---------------NNIFSIKTQKTGTIIT-VELPDGFMKLLA 246
           GLR S+       ++                N    +K  KT + +  +  P   M LL 
Sbjct: 197 GLRISEVLGLTWDNIDFEENTITVNKITSRINGSVILKEPKTESSVRKISSPKELMSLLK 256

Query: 247 MTPIGKETFFINNDKQ-------------KMNATQFSIWFKAKATKAGVNK-SAHGVRKF 292
              I +    + +  +              +     S  FK    K  +     H +R  
Sbjct: 257 EYKIKQNKNLLKSSIRNNNNLLFFNKKCEPIAEDVMSKKFKRFLEKNELPHIRFHDLRHS 316

Query: 293 SATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVV 343
             T+  ++      +    G   +      Y+       +  + S +IS  +
Sbjct: 317 HVTLLINSKVPIKVISERVGHSNISTTLSVYSHVL--KEMDKEASDKISESL 366


>gi|189462732|ref|ZP_03011517.1| hypothetical protein BACCOP_03429 [Bacteroides coprocola DSM 17136]
 gi|189430601|gb|EDU99585.1| hypothetical protein BACCOP_03429 [Bacteroides coprocola DSM 17136]
          Length = 387

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 47/263 (17%), Positives = 88/263 (33%), Gaps = 32/263 (12%)

Query: 88  AVNSRISFESYF-------DQIIRKSG--DFDYRKITTKHIRSGVESRKHTPSSAIQFLT 138
              S+ +++ Y        + I R     D    ++T   IR      ++    A   + 
Sbjct: 127 KDRSKRTYQKYLTVRKYVAEFITRHYKRTDMAMNELTEDFIRDYCLYLRNEVGLAQSSVW 186

Query: 139 SMRVLFKW----AVRQEYVAINPCLS--VERPKRKTEGIRPWTKEDMQQFKSF---WSEG 189
              +  K     A     +  NP     V+ P  K  G    T+ ++Q   +        
Sbjct: 187 IYSIPLKHIVTTAHYNGKIPRNPFAMYHVD-PDHKERGF--LTENEIQALSAIKLDNPNF 243

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDGFMKLL 245
           +  R  F F  ++G+  +D       ++           K QKTG    ++L D  M+++
Sbjct: 244 ALARDLFLFGCWTGISFTDIKNLTTDNIVEMNGTPWIVSKRQKTGVPFQIKLMDIPMQII 303

Query: 246 AM-TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302
               P  ++    N      +    +   KA A K G+ K  S H  R   A ++ + G 
Sbjct: 304 RRYEPFRRDKRLFNIG----SLDMVNKRIKAVAKKCGIEKPISFHLSRHSFAVLALNYGM 359

Query: 303 TAHELMATYGWKTVDQAETYTKG 325
               +    G   +   + Y + 
Sbjct: 360 PIESVSKILGHTNITTTQIYARA 382


>gi|190015705|ref|YP_001967309.1| phage integrase family protein [Bacillus cereus]
 gi|116584612|gb|ABK00729.1| phage integrase family protein [Bacillus cereus]
          Length = 319

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 37/277 (13%), Positives = 79/277 (28%), Gaps = 31/277 (11%)

Query: 85  GSLAVNSRISF----ESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSM 140
              +  ++  +      +   I    G           I     S+K+  ++  +  T +
Sbjct: 31  KKRSERTKQQYLHDLSHFLRYIKETIGTIQELSHNDMEIYFYQLSKKYAATTLRRKKTVV 90

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEG--IRPWTKEDM-QQFKSFWSEGSQPRLAFE 197
           +   K+      ++ N    +++   K E    R    E++ +   +           F 
Sbjct: 91  QQFLKYVYDNNGLSDNFSSRLKKVSVKKEELVNRDLFPEEVNEILDTLKKTNFFMYSLFF 150

Query: 198 FLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIIT-VELPDGFMKLLAMT---- 248
            L  +GLR  +   A    L      N++ ++    G     V + +  +  L       
Sbjct: 151 LLTTTGLRIEEVANAKWADLAFHPSLNVYLLRVVGKGNKTREVRIFEDVLNDLCRLRQLR 210

Query: 249 -------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--------KSAHGVRKFS 293
                        F    D     A   S +   K  +  +          + H  R F 
Sbjct: 211 KQTSELDASSSSAFLPKADGSHYRADYLSKYVAEKIEETNLPFLRYRKDRITPHTCRHFF 270

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
           A      G    ++    G +++   E Y +   R +
Sbjct: 271 ANHLMGKGVELKKIRDYLGHESIMTTERYLRERTRRQ 307


>gi|327474287|gb|EGF19694.1| phage integrase family site-specific recombinase [Streptococcus
           sanguinis SK408]
          Length = 395

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 59/364 (16%), Positives = 113/364 (31%), Gaps = 50/364 (13%)

Query: 6   RLPPFVTKERTRHGKIIYYFRKG-----------HGRRIRLPYPHESTFIPAYMSALTGS 54
           +   +    +   GKI +    G            GR+ +   P  S F  AY   L   
Sbjct: 5   KTKKYKGVYKDSKGKIYFQIELGVDPITGKRIQKKGRKNQQGLPFNS-FKEAYEEIL--- 60

Query: 55  TPKREYINSPRKKP-TTLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYR 112
             K E++NS       T +  + E Y K        V  + +   +    I++ G     
Sbjct: 61  RLKHEFVNSTINNSFLTFREFMEEIYLKYYQQKVQFVTYQTALPHH-QLFIKQFGSKKLS 119

Query: 113 KITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170
            I+T        +   K++ + A    +  +    +A R  Y+   P   +E P+ K   
Sbjct: 120 DISTIDCERFRLAIIDKYSSNYAKNMWSRFKACLGYAERLGYIDRVPFKGLENPRGKHPD 179

Query: 171 IRPWTKED----MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSI 224
            + WT ++    +  F     EG    +       +GLR S+      + +        +
Sbjct: 180 TKFWTFDEFKKVINSFDISEYEGLHNYMTIWLYFMTGLRVSEGIALKWEDIDFERKWIHV 239

Query: 225 --KTQKTGTIIT--------------VELPDGFMKLLAMT-----PIGKETFFINNDKQK 263
               +K    +               ++L D  + +L            + + I+     
Sbjct: 240 HSTIEKDKNGVWYAKQQTKTVAGNRKIDLDDFTITILKKWREVQIKNDDKDYVISRFGAP 299

Query: 264 MNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG-ATAHELMATYGWKTVDQA-E 320
           +  +  S   K  A   GV + +  G+R   A+   +        +    G         
Sbjct: 300 LCKSTISRIIKRHAKITGVPEITGKGLRHSHASYLINVLHKDTLYVSYRLGHADKSTTLN 359

Query: 321 TYTK 324
           TY+ 
Sbjct: 360 TYSH 363


>gi|268611875|ref|ZP_06145602.1| hypothetical protein RflaF_20511 [Ruminococcus flavefaciens FD-1]
          Length = 465

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 38/277 (13%), Positives = 83/277 (29%), Gaps = 44/277 (15%)

Query: 91  SRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFLTSMRVLFKWA 147
            R   + Y + I     +    ++   HI++ +  +       S+A Q+  ++   F +A
Sbjct: 115 YRKVSKRYMEYINENYPNLTLGQVNHNHIQNYLNYKLDSGCKGSTAKQYYLALHSAFAYA 174

Query: 148 VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCS 207
           V+ E +  +P   +  P+ +      +  +++ +    +  G +  L      Y GLR  
Sbjct: 175 VKMELIPKHPMDKLVVPRAERHEATFYNADELNELFEVFK-GDKLELVVNIAAYYGLRRC 233

Query: 208 DSCRAGVQHLQ------------------NNIFSI----KTQKTGTIITVELPDGFMKLL 245
           +        +                   N    I    + +   T  T+ L     ++L
Sbjct: 234 EILGLRWDAIDFKNKTITIQRKIVSDYDDNGEIKIFVETRLKTNSTRRTLPLIPHIEEML 293

Query: 246 ---------AMTPIGKET-------FFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHG 288
                         GK            +N    ++    +  F    T+ G+     H 
Sbjct: 294 LEKKKMEVKFKKACGKSYNKEFDGFICRDNYGNMISPGYVTQHFHYIITRNGLKHLRFHD 353

Query: 289 VRKFSATISADAGATAHELMATYGWKTVD-QAETYTK 324
           +R   A++          +    G       A  Y+ 
Sbjct: 354 LRHSCASLLLAHDVPMKAIQEWLGHSNFSITANLYSH 390


>gi|262192538|ref|ZP_06050688.1| site-specific recombinase phage integrase family [Vibrio cholerae
           CT 5369-93]
 gi|262031583|gb|EEY50171.1| site-specific recombinase phage integrase family [Vibrio cholerae
           CT 5369-93]
          Length = 411

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 54/350 (15%), Positives = 106/350 (30%), Gaps = 53/350 (15%)

Query: 19  GKIIYYFR---KGHGRRIRLPYPHESTFIPAYMSAL-------TGSTPK------REYIN 62
           G + + FR    G  +R+ L    + + + A   A         G  PK      R+   
Sbjct: 37  GNVRWQFRYKINGASKRVDLGDYPDLSLLKAREEAQKCREWLAEGHDPKLQRSVIRQETL 96

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122
            P      L++ + EY +S    +    S+         I    G     +  T H    
Sbjct: 97  KPVAVQDALEYWLVEYAESNRANADKHRSQFQK-----HIYPYIGALPLAQTETHHWIEC 151

Query: 123 VES--------RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV---ERPKRKTEGI 171
            +         ++  P +A   L + +   ++   + Y        +   +  K++ +  
Sbjct: 152 FDRVRKGIAGKQRPAPVAAGYVLQNAKQALRFCRVRRYATSRVLDDLTVNDVGKKQRKKD 211

Query: 172 RPWTKED-------MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
           R  T ++       +Q    F        L    +++ G R  +   +  +         
Sbjct: 212 RVLTAQELSDLWNAVQTPNKFLPYYCH--LVKFLVVF-GARTQEVRLSKWKEWDFEALIW 268

Query: 225 KT----QKTGTIITVELPDGFMKLLAMTP--IGKETFFINNDKQKMNATQFSI--WFKAK 276
                  KT   I   +PD  +  L        KET  +  +K     +Q     W +  
Sbjct: 269 TVPKEHSKTDEKIIRPIPDELVPWLLQLKEDSDKETLILGEEKSPETVSQQGRFFWQRLG 328

Query: 277 ATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
             +A    + H +R+  AT   + G   + +    G         Y +  
Sbjct: 329 HEEA---WTLHDIRRTLATRLNELGVAPYVVEQLLGHSLGGVMAIYNRSQ 375


>gi|300779338|ref|ZP_07089196.1| integrase [Chryseobacterium gleum ATCC 35910]
 gi|300504848|gb|EFK35988.1| integrase [Chryseobacterium gleum ATCC 35910]
          Length = 407

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 42/274 (15%), Positives = 93/274 (33%), Gaps = 38/274 (13%)

Query: 85  GSLAVNSRISFE------SYFDQIIRKSGDFDYRKITTKHIRSG----VESRKHTPSSAI 134
              A  +   ++        F +      D + +KI    +          R    +SA+
Sbjct: 126 KEFAQGTLTRYKTCLKHTKDFLKWKYSITDIEIKKIDYAFLNDFEFFLRTERSCNNNSAV 185

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSV-ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ-- 191
           +++ +   + +  +   ++  +P ++   +    T       +++++   +      +  
Sbjct: 186 KYIKNFGKIVRICLANGWIERDPFMNYHSKFNEVTRMF--LNEQEIEVLFTKDFTNERLS 243

Query: 192 -PRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVELPDG----- 240
             R  F F  ++GL   D+ +   Q++            K QKT T   + +        
Sbjct: 244 LVRDIFLFSCFTGLAYIDTQKLTYQNINLGLDGSQWIYTKRQKTKTTSNIPILSQTEKII 303

Query: 241 --FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSAT- 295
             +    A    GK    ++N K        + + K  A   G+NK  + H  R   AT 
Sbjct: 304 KKYKNHPACLNSGKLLPILSNQK-------MNAYLKEIADLCGINKELTYHIARHTFATT 356

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           ++   G +   +    G K++   + Y K  D  
Sbjct: 357 VTLSNGVSIESVSKMLGHKSIKTTQHYAKILDSK 390


>gi|15616113|ref|NP_244418.1| integrase (phage-related protein) [Bacillus halodurans C-125]
 gi|10176175|dbj|BAB07270.1| integrase (phage-related protein) [Bacillus halodurans C-125]
          Length = 378

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 51/318 (16%), Positives = 105/318 (33%), Gaps = 49/318 (15%)

Query: 72  KWLISEYRKSAHWGSLAVNSRI------SFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
             L SEY +  +W  +    +             + + +   D   + +T +  +  +  
Sbjct: 59  DQLFSEYMR--NWYEVFRKGKKSEDNDNDIRRAVEFVEKYLPDVKLKDLTREMYQKALNE 116

Query: 126 RKHTPSSA--IQFLTSMRVLFKWAVRQEYVAINPC---LSVERPKRKTEGIRPWTKEDMQ 180
              T S+A   +  T MR   K A+    +  +P    ++V + + K E I+    E+  
Sbjct: 117 YGETHSTASVKKHHTYMRACLKEALADGIIYKDPTFNVVAVGKVEPKNEEIKYLNYEEAA 176

Query: 181 QFKSFWSEGSQPRLA----FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG------ 230
           +         Q R        F L +G R S+        +     ++   KT       
Sbjct: 177 KLLRVTFGNLQQRYISRYIILFALATGARFSEIIGLTWDCVDFENKTVTINKTWDHKYKK 236

Query: 231 ---------TIITVELPDGFMKLLAMTPIG-------------KETFFINNDKQKMNATQ 268
                    +  T+ + D  + +L                       FIN+  + +    
Sbjct: 237 WFDNTKNYASKRTITVDDHTLSILKDLKRKQAQLAIKTGLRNEHNLVFINSKFELVTNNA 296

Query: 269 FSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGA 326
            +   +    KA + + + HG+R   A++    G     +    G K +    +TY+   
Sbjct: 297 VNKTLRLLCKKANIKEITCHGLRHTHASMLLFKGVNIKYVSRRLGHKDIVTTLQTYSHIM 356

Query: 327 DRIRLGIKNSRRISSVVD 344
           D   +  K SR++ + + 
Sbjct: 357 D--EMEQKESRQVDATMT 372


>gi|256824962|ref|YP_003148922.1| site-specific recombinase XerD [Kytococcus sedentarius DSM 20547]
 gi|256688355|gb|ACV06157.1| site-specific recombinase XerD [Kytococcus sedentarius DSM 20547]
          Length = 336

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 40/308 (12%), Positives = 89/308 (28%), Gaps = 60/308 (19%)

Query: 85  GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSM- 140
              + ++  ++ +    +       G  ++R++T   +RS    R     +         
Sbjct: 21  RGRSPHTVRAYTADLTALAEHLEAAGATEWRQVTLSDLRSFAARRAAAGLARSTLARGTA 80

Query: 141 --RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF---------------- 182
             R  F W V  E + ++P   +  P+ +         E   Q                 
Sbjct: 81  SQRTFFGWMVATERLVVDPSARLVSPRVEKRLPAVLRAEQAAQLVEGGGTRPEPRATGGA 140

Query: 183 -------------KSFWSEGS-----------QPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218
                         +  + G+           + R   E L  +G+R  +        + 
Sbjct: 141 GDPGGDTQTDTDTDTDAAPGTEADPVSLATDLRDRAVLELLYATGIRVGELVSLDTGAVS 200

Query: 219 NNIFSIKTQKTGT-----IITVELPDGFMKLLA------MTPIGKETFFINNDKQKMNAT 267
               +++    G+        V       + +       +     E  F+     +++  
Sbjct: 201 LQDHTVRVWGKGSKERVVPFGVPALRALEEWVHQGRPELLGARSGEALFLGVRGGRIDPR 260

Query: 268 QFSIWFKAKA--TKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK- 324
           +        A   +   +   HG+R  +AT   DAGA    +    G  ++   + YT  
Sbjct: 261 EVRRVVHRAAQRVEGAADIGPHGLRHSAATHMVDAGADIRSVQELLGHASLATTQVYTHV 320

Query: 325 GADRIRLG 332
             +R+R  
Sbjct: 321 SVERLREA 328


>gi|226330491|ref|ZP_03806009.1| hypothetical protein PROPEN_04409 [Proteus penneri ATCC 35198]
 gi|225201286|gb|EEG83640.1| hypothetical protein PROPEN_04409 [Proteus penneri ATCC 35198]
          Length = 359

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 53/338 (15%), Positives = 111/338 (32%), Gaps = 49/338 (14%)

Query: 9   PFVTKERT-RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGST------------ 55
           P + ++   R+GKI + ++     +       E     A  +A+  +T            
Sbjct: 13  PNLYRKLDKRNGKIYWQYKHPITDKFHSLGTDEQE---ARETAIQANTIIAEQHTRQLLS 69

Query: 56  -PKREYINSPRKKPTTLKWLISEYR----KSAHWGSLAVNSRISFESYFDQIIRKSGDFD 110
             +R       K   ++   + +Y     +    G L +NS        +   +  G   
Sbjct: 70  INERLSKIKTNKSEISVDIWMDKYLDIQKERLDIGELKINSYRQKMKPINLFRQYCGTKI 129

Query: 111 YRKITTKHIRSGVESRK--HTPSSAIQFLTSMRVLFKWAVRQEYVAI--NPCLSVERPKR 166
            ++IT   I   ++S K       A      +  +FK A    YV    NP  + ++P+ 
Sbjct: 130 LKEITALDIAEIIDSVKVLGHSRMAQVVRMVLIDVFKEAQHAGYVPPGYNPAKATKQPRN 189

Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQPRLA-FEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225
           + +  R  T ++ +                    L +G R  D C+     + +++  I+
Sbjct: 190 RVKRERM-TLDEWRAIYQQAKNHPPYLQCGMLLALTTGQRIGDICKMKFSDIWDDMLHIQ 248

Query: 226 TQKTGTIITVEL-------PDGFMKLLAMTPIG---------KETFFINNDKQKMNATQF 269
            +KTG+ + + L            +++A              + T       +++     
Sbjct: 249 QEKTGSKLAIPLSLKCEAINLSLREVVAQCRDAVVSKYLVHYRHTTAQAKRGEQVTPNTL 308

Query: 270 SIWFKAKATKAGVNK------SAHGVRKFSATISADAG 301
           +  FK    K G+        + H  R  S  +  + G
Sbjct: 309 TTTFKKARDKCGLTWEKGTAPTFHEQRSLSERLYREQG 346


>gi|224024656|ref|ZP_03643022.1| hypothetical protein BACCOPRO_01384 [Bacteroides coprophilus DSM
           18228]
 gi|224017878|gb|EEF75890.1| hypothetical protein BACCOPRO_01384 [Bacteroides coprophilus DSM
           18228]
          Length = 416

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 41/292 (14%), Positives = 86/292 (29%), Gaps = 33/292 (11%)

Query: 53  GSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYR 112
           G   +   +   ++  +T     S YR S ++          + +   +        D  
Sbjct: 108 GERERERLLARSKEINST-----STYRHSGYYQ----KYLKDYLTSLGK--EDIEFSDIT 156

Query: 113 KITTKHIRSGVESRKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
           +      ++ ++  K+ +     + L  +  L   AV  E +  NP   +E  K+     
Sbjct: 157 EDFGSSYKAFMKRNKNFSAQQINKCLCWLSKLVYLAVDYEILRANPLEDMEYEKKPALKH 216

Query: 172 RPWTKEDMQQFKS---FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-----NNIFS 223
              ++ +++               R AF F  ++GL   D       H+           
Sbjct: 217 MHISRAELKAILETPMLDPLQELGRRAFLFSTFTGLTYVDIMLLHPHHIGTTADGRRYIR 276

Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK----MNATQFSIWFKAKATK 279
           I  +KT     + L     ++L       + +   +D +      +  +           
Sbjct: 277 INRKKTNVEAFIPLHPIAEQIL-------DLYNTTDDTKPVFPLPSRDEMWFEIHELGVA 329

Query: 280 AGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            G   N S H  R    T     G     +    G   +   + Y +  D+ 
Sbjct: 330 IGRKENLSYHQSRHSFGTFLISEGIPIESIAKMMGHSGIRTTQRYAEVTDKK 381


>gi|150006208|ref|YP_001300952.1| tyrosine type site-specific recombinase [Bacteroides vulgatus ATCC
           8482]
 gi|149934632|gb|ABR41330.1| tyrosine type site-specific recombinase [Bacteroides vulgatus ATCC
           8482]
          Length = 483

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 44/280 (15%), Positives = 101/280 (36%), Gaps = 45/280 (16%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQ------IIRKSGDFDYRKITTK---HIRSGVESR 126
            +Y K    G  A  +   +++ +        I     D   +++T          + + 
Sbjct: 190 EDYEKQVEAGMKAKGTLAKYKTVYKHLQEFLNIRYHVKDIALKELTPAFISDFEMFLRTD 249

Query: 127 KHTPSSAIQFLTS-MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           KH  ++ +      +R +   A+  E++  +P    E  K +T      TK++++     
Sbjct: 250 KHCCTNTVWLYVCPLRTMVFIAINNEWLTHDPFREYEIKKEETT-RSFLTKDEIRLLMDG 308

Query: 186 WSEGSQPRLAFEFLLY---SGLRCSDSCRAGVQHLQN-----NIFSIKTQKTGTIITVEL 237
             + ++  L  +  L+   +GL  +D      ++++         +I  QKTG +  + L
Sbjct: 309 KLKNAKQELYRDLYLFCAFTGLSFADMRNLTEENIRTYFDDHEWINISRQKTGVVSNIRL 368

Query: 238 PDGFMKLL----------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--S 285
            D   +++           + P+      ++               +A A + G+ K  +
Sbjct: 369 LDIAKRIIDKYRGLCEDGRIFPVPHYMTCLHG-------------IRAVAKRCGITKHIT 415

Query: 286 AHGVRKFSAT-ISADAGATAHELMATYGWKTVDQAETYTK 324
            H  R  +AT +    G     + +  G K++   + Y K
Sbjct: 416 WHQSRHTAATTVFLSNGVPIETVSSMLGHKSIKTTQIYAK 455


>gi|83943068|ref|ZP_00955528.1| hypothetical protein EE36_12843 [Sulfitobacter sp. EE-36]
 gi|83846076|gb|EAP83953.1| hypothetical protein EE36_12843 [Sulfitobacter sp. EE-36]
          Length = 504

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 54/374 (14%), Positives = 118/374 (31%), Gaps = 79/374 (21%)

Query: 44  IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKS-----AHWGSLAVNSRISFESY 98
           + AY  A T    +   + + R     ++       ++       W  L   +  +++ +
Sbjct: 131 MDAYQGAKTSEQAELADLKAERAA-GKIEAATRVSGETVLSILPRWRGLKKQTPATWKKH 189

Query: 99  FDQIIR-------KSGDFDYRKITTKHIRSGVESRK--------HTPSSAIQFLTSMRVL 143
                          G+    +IT +H+   VE  +         +P+S  + L S+R L
Sbjct: 190 VQYAREFTELHAGVGGELYLSEITKRHVIQYVEHAQTFTYRGAPLSPTSITKRLDSVRAL 249

Query: 144 FKWAVRQEYVAINPCLSVERPK-RKTEGIRPW---TKEDMQQF-----------KSFWSE 188
             +A   + +  NP   VE P   + +  R W   T E++++            ++    
Sbjct: 250 LAFATSVDEIDYNPATGVEPPADHRPKASRSWKSFTPEEIKKLVSVSTTLWNGRRNSKQP 309

Query: 189 GSQPRLAFEF--LLYSGLRCSDSCRAGVQHLQNNIFSIK-------------TQKT-GTI 232
           G +  LA     L+++G R  + C+   + +  +  +I+               K   +I
Sbjct: 310 GRKEDLATALQCLVWTGARPEEVCQLRREDIDLSTGAIRITNEEADDDARARQTKNERSI 369

Query: 233 ITVELPDGFMKLLAMTPIGKETFFIN-------------------------NDKQKMNAT 267
            T+ +    +  L        +  +                             + ++  
Sbjct: 370 RTLPIHSRLLPALLEHLRRNNSALLFPSFAPEPTPKELKEAESAGKLEIKGRYARPLSRE 429

Query: 268 QFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGA 326
                 + + +     K  + +R   A  S   G   H   A  G    +  A  Y   A
Sbjct: 430 WTDN-LRKQISPDEPRKVLYSLRHSWAAESRRTGMPEHVRNALMGHADDNPHAGRYGVDA 488

Query: 327 DRIRLGIKNSRRIS 340
           D +    ++  R++
Sbjct: 489 DWLEEKRRHVERMA 502


>gi|325273253|ref|ZP_08139531.1| site-specific recombinase, phage integrase family protein
           [Pseudomonas sp. TJI-51]
 gi|324101584|gb|EGB99152.1| site-specific recombinase, phage integrase family protein
           [Pseudomonas sp. TJI-51]
          Length = 402

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 35/327 (10%), Positives = 86/327 (26%), Gaps = 50/327 (15%)

Query: 45  PAYMSALTGSTPKREYINSPRKKPTTLKWLISE-YRKSAHWGSLAVNSRISFESYFDQII 103
             +++             S R+   TL+  + E Y     W      +        +   
Sbjct: 70  ARWLAEAHAHGAPLVAAKSKRRAAHTLQSYLEESYYP---WLETHHKAHQKTRHAIEYSF 126

Query: 104 RKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
                    +IT + + +            ++A + L ++R     AV    +  +P   
Sbjct: 127 GALMRKPLAEITQRDLEAMRVKWLAAGLRDATANRKLAALRGALSKAVEWGALEQHPMTK 186

Query: 161 VERPKRKTEGI-RPWTKEDMQQFKSFWSE------------------------------- 188
           ++  +  T    R  + E+ ++ +    +                               
Sbjct: 187 LKPMRLDTRARVRFLSSEENRRLRQALDDREERIRDERDSANRWRRERKKAELPDLRKVA 246

Query: 189 -GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT----QKTGTIITVELPDGFMK 243
                +      L +GLR  +        +     ++       K+     + L    ++
Sbjct: 247 FADHLKPMAIISLNTGLRRGELFNLTWADIDLGQKTLTVVGEGAKSDQTRHIPLNKEALQ 306

Query: 244 LLAMTPI---GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISAD 299
           ++        G    F +     M        +     ++ ++    H +R   A+  A 
Sbjct: 307 VIKGWKAQSNGLPLLFPSQTGGVM--DNVKKSWDGVLKESKISSFRWHDLRHTFASNLAM 364

Query: 300 AGATAHELMATYGWKTVDQAETYTKGA 326
            G   + +    G   +     Y   A
Sbjct: 365 KGVPLNTIRDLLGHADLKMTLRYAHLA 391


>gi|299782827|gb|ADJ40825.1| Integrase [Lactobacillus fermentum CECT 5716]
          Length = 367

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 33/310 (10%), Positives = 94/310 (30%), Gaps = 30/310 (9%)

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
           P     TL      + +      +   ++  ++   + + +       + +     ++ +
Sbjct: 58  PDLTEITLADYYQRWYQLYKEQGITRITQNRYKVIGNVLTKYFNKKKLKDVRKSDYQAFI 117

Query: 124 ESRK--HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP--WTKED- 178
                 H   S  +   +++ +  +A+  E +  +   +++    K    +     +++ 
Sbjct: 118 NWYGABHARDSVNKLNGAVKKMVSFALDDEIIRKDFTSNIQVIANKDRERKVEYLNQKET 177

Query: 179 ---MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ------------NNIF- 222
              M   K+        +      L +G+R S+        L             + I  
Sbjct: 178 AVLMDAVKADLDPDHPVKYMILTALLTGMRKSEIQALTWNDLDFLHSTININKSWDEIEK 237

Query: 223 SIKTQKT-GTIITVELPDGFMKLLAMTPIGKET--FFINNDKQKMNATQFSIWFKAKATK 279
           + K  KT  +   + +    +K+LA       T  F+     Q       +   +    +
Sbjct: 238 AFKPTKTLSSRRVIPVNRELLKMLASLKANNSTMVFYSPEYDQVPTGNALNKALRXIMHQ 297

Query: 280 AGVNKS---AHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGAD--RIRLGI 333
             + K     H +R          G   + +    G   +    +TY+   D  + +   
Sbjct: 298 QAIAKQGFHFHSLRHVHVAYLLGQGVDVYAISKRLGHSDITITLKTYSYLIDEYKAKNDD 357

Query: 334 KNSRRISSVV 343
              +++  ++
Sbjct: 358 LIVKKLQELI 367


>gi|172055124|ref|YP_001806451.1| integrase/recombinase [Cyanothece sp. ATCC 51142]
 gi|171701405|gb|ACB54385.1| integrase/recombinase [Cyanothece sp. ATCC 51142]
          Length = 409

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 40/281 (14%), Positives = 77/281 (27%), Gaps = 67/281 (23%)

Query: 116 TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP-- 173
            +  R  V+ +++  ++    L  +R  +   +  EY++ NP L +  P    +      
Sbjct: 75  KRFRRWLVKEQQYQTATISLKLAVLRRFYDALLENEYISFNPALRLRPPTEVKDPAATIN 134

Query: 174 -WTKEDMQQFKSFWSE-----GSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIK 225
               E+M +              + R     ++  G R +D  R  V ++        ++
Sbjct: 135 YLQSEEMSRLLDSLPAENTVHALRDRFLVSAMVLQGFRTADLHRVCVGNIVRDGKNVGLR 194

Query: 226 TQKTGTIITVELPDGFMKLLAM----------TPIGKETFFINNDK------QKMNATQF 269
                    V L     KLL                    F++  +      + ++   F
Sbjct: 195 VSSKRHTRVVPLTPDLAKLLRCYLRARRKAGELITESTPLFLSVARNNKKMWKPLSRRSF 254

Query: 270 SIWFKAKATKAGV-----------------------------------------NKSAHG 288
                      G+                                           SAH 
Sbjct: 255 RRIVDKYLNAIGLKELPRPQNPKKLTGSQEKKNLPTTGKSKKAHNLSKYKPKPRKLSAHS 314

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           +R  +AT++  AGAT  ++    G         Y    DR 
Sbjct: 315 LRHTAATLALRAGATLEQVQDLLGHTDPKTTMVYVHIGDRW 355


>gi|125624671|ref|YP_001033154.1| IntTn5276 protein [Lactococcus lactis subsp. cremoris MG1363]
 gi|124493479|emb|CAL98456.1| IntTn5276 protein [Lactococcus lactis subsp. cremoris MG1363]
 gi|300071463|gb|ADJ60863.1| IntTn5276 protein [Lactococcus lactis subsp. cremoris NZ9000]
          Length = 379

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 44/262 (16%), Positives = 86/262 (32%), Gaps = 36/262 (13%)

Query: 99  FDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158
               I K   +   ++TT  I+S +       S+       +R+LF++A    Y+  NP 
Sbjct: 100 LRGFIEKFSKYKVSEVTTADIQSYLMELDIANSTRKNRRIYIRILFRYAENIGYIDSNPA 159

Query: 159 LSVERPK-------RKTEGIRPWTKEDMQ---QFKSFWSEGSQPRLAFEFLLYSGLRCSD 208
             V  PK        +    +  +KE+M     F   + +  +  LA EF+  +G R  +
Sbjct: 160 DKVVLPKVRLEIETLERANEKFLSKEEMSSVLIFCKSYKKDIRYTLAMEFIFLTGCRFGE 219

Query: 209 SCRAGVQHLQ--------NNIFSIKTQK-----------TGTIITVELPDGFMKLLAMTP 249
                 Q +         ++    +  K            G+I T+ L +  ++++    
Sbjct: 220 FASIRYQDIDFKNKLLRIDHTLEYRVAKYDDRVIQTPKTVGSIRTISLSNRCLEIIDYFQ 279

Query: 250 I---GKETFFINNDKQKMNATQFSIWFKAKATK-AG--VNKSAHGVRKFSATISADAGAT 303
                 +  F+N          F  +      K  G       H +R    ++  + G  
Sbjct: 280 KNCLDDKFVFVNAVGGIFRQPVFYKFICDNCQKVLGNERKYGIHLLRHSHVSLLVELGVP 339

Query: 304 AHELMATYGWKTVDQA-ETYTK 324
              +M   G +        Y+ 
Sbjct: 340 IKAIMERVGHRDESITLRIYSH 361


>gi|29293005|gb|AAO73845.1|AF335469_2 FotT [Escherichia coli]
          Length = 191

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 57/173 (32%), Gaps = 16/173 (9%)

Query: 174 WTKEDMQQFKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQK 228
            T+ +++   +    G    +           G R S+ C   ++ +  ++   +I+  K
Sbjct: 7   LTQSEVELMLTEAKHGQFSERNYCLLYLSFIHGFRVSEVCNLRLEDVCLRDKSLNIRRMK 66

Query: 229 TGTIITVELPDGFMKLLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKA 280
            G      L    +K+L               E  F++     ++  +     +    KA
Sbjct: 67  NGFSTIHPLLSDEVKVLKAWLCVRDKMNGSESEWLFVSRQGGALSRQRVWQMIQNLGKKA 126

Query: 281 GV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIR 330
           GV  N   H +R       AD G     +    G + +     YT   A+R +
Sbjct: 127 GVKVNSHPHMLRHACGYALADRGVDTRLIQDYLGHRNIRHTVCYTASNAERFK 179


>gi|53718793|ref|YP_107779.1| putative phage integrase [Burkholderia pseudomallei K96243]
 gi|167814967|ref|ZP_02446647.1| putative phage integrase [Burkholderia pseudomallei 91]
 gi|52209207|emb|CAH35152.1| putative phage integrase [Burkholderia pseudomallei K96243]
          Length = 413

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 49/296 (16%), Positives = 98/296 (33%), Gaps = 30/296 (10%)

Query: 52  TGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY 111
            G  P  E      +K  +++ LI++YR+     +LA +++ S+     ++ R  G    
Sbjct: 85  QGINPAVERRKEKARKDWSVRQLIADYRE-RVLVTLADSTQRSYGRNLVRVERGMGSLSV 143

Query: 112 RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV-------ERP 164
           R ++   + + +E  K     A      ++ +FK A  +  +  NPC  +       +RP
Sbjct: 144 RVVSAADVVAEIERTKLGWVEAFTLWCVLKAIFKHAAGKRLIDANPCAGIMLEAIIGKRP 203

Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIF 222
             +   +   T E++    +  S       A    L +G+R S+   +     HL    +
Sbjct: 204 PVRQRLM--LTHEELYVLMN-ASMRDVNLYAVRIALATGVRISELYTSLRANLHLDEARW 260

Query: 223 SIKTQKTGTIITVELPDGFMKL---LAMTPIGKETFFINNDKQKMNA-TQFSIWFKAKAT 278
            I   KTG  + + L     +    L       E         ++      +   K    
Sbjct: 261 HIPASKTGPTMDIPLAPIVSEWFERLLDLAGTSEYVLPARLSNRLGRHDGDTHVSKDAIR 320

Query: 279 KAGVNK------------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           +A ++             + H +R    +     G +          K       Y
Sbjct: 321 EA-IDYWIDNHKPQIRRFTPHDLRSTMKSHMRRLGVSRDISEMCLNHKLAGVEGIY 375


>gi|326562523|gb|EGE12840.1| integrase [Moraxella catarrhalis 103P14B1]
          Length = 421

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 37/294 (12%), Positives = 95/294 (32%), Gaps = 31/294 (10%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-KHTPSS 132
           L   Y       SL  N+   ++      +     +    I  K I+   +   K +P+ 
Sbjct: 111 LSDAYTAFKAERSLKPNTLRDYDKVMSVYLATWQVYKLGDINRKMIQEKHKELTKISPAQ 170

Query: 133 AIQFLTSMRVLFKWAVRQEYVAIN---------PCL---------SVERPKR--KTEGIR 172
           A   +   R ++ +AV   Y+  +         P           +++R K     + + 
Sbjct: 171 ANMVMRVFRAVYNFAVEH-YLDDDENPILSSIAPTRTLTAKKSWNNIKRRKTYINEDKMP 229

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTG 230
            W +  ++ F          +     L+ +G R ++        +       +    K G
Sbjct: 230 DWVRAVIE-FDGRGQSRDTNKEFILTLILTGFRRAECESIAWSAVDLRYGFITSIDPKNG 288

Query: 231 TIITVELPDGFMKLLAMTPIGK--ETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHG 288
            + ++ + D    ++      +  +  F +   +  +    S   +    + G+  + H 
Sbjct: 289 EVHSLPMGDVLWAIMKKRHRQRINDWVFESAKSKSGHIENISKVREKINAQCGIQFTFHD 348

Query: 289 VRKFSATISADAGATAHELMATYGWKTV---DQAETYTKGADRI-RLGIKNSRR 338
           +R+   +I+ +     + +      K+    D    Y + +D+  R  + +   
Sbjct: 349 LRRTFGSIAENLDYGQYTIKRLLNHKSAGNSDVTAGYVQVSDKKLRQAMNDIEM 402


>gi|255692294|ref|ZP_05415969.1| phage-related integrase [Bacteroides finegoldii DSM 17565]
 gi|260622027|gb|EEX44898.1| phage-related integrase [Bacteroides finegoldii DSM 17565]
          Length = 341

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 44/300 (14%), Positives = 94/300 (31%), Gaps = 39/300 (13%)

Query: 85  GSLAVNSRISFESYFDQIIR--------KSGDFDYRKITTKHIRSGVESRKHTP----SS 132
             ++ N+  S+   F  ++         K+ +     IT K + + ++  + T     ++
Sbjct: 22  RGVSPNTIRSYSESFSLLLNFLDEQVNIKADNLRLEHITRKTVLNFLDWLQDTKKSSNAT 81

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP---WTKEDMQQFKSFWSE- 188
             Q L ++R    +   ++   +     +   K KT   R     + + ++   +     
Sbjct: 82  RNQRLAALRSFCTYMQYEDVKRLEQWQEILSIKVKTHEKRSVNYLSIDGIKLLLAQIPIN 141

Query: 189 ---GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKT-QKTGTIITVELPDGFMK 243
              G +       L  SG R  +        L+      +    K      V L D  + 
Sbjct: 142 TKKGRRDLALISLLYDSGARVQELIDLTPASLKLEKPCHVTLFGKGRKKRIVPLQDEQVN 201

Query: 244 LLA---------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--------NKSA 286
           LL          ++   +   F N+  +K+  +  S         A +          S 
Sbjct: 202 LLRSYMEENRLDLSGFNQRPLFFNSCGRKLTNSGISYILNNYINHARIQDPELIPEKISP 261

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346
           H +R   A     AG     +    G  ++   E Y + AD  +          +++ +D
Sbjct: 262 HTLRHSKAMHLLQAGVNLVYIRDILGHVSIQTTEIYAR-ADSKQKREALESAYVNMIPND 320


>gi|161620434|ref|YP_001594320.1| integrase [Brucella canis ATCC 23365]
 gi|161337245|gb|ABX63549.1| Integrase [Brucella canis ATCC 23365]
          Length = 402

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 48/312 (15%), Positives = 110/312 (35%), Gaps = 28/312 (8%)

Query: 49  SALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSG 107
           +A      ++    +  K   T      ++ +      ++  +R      +++ +  K G
Sbjct: 77  AAGKSPAKEKARDKARVKDAETFGAWAEKWLRGYQ---MSETTRNMRRGTYERDLKPKFG 133

Query: 108 DFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165
           +    +IT + +R+  ++   +  PS+A+     M ++F+WA+ +     NP   V    
Sbjct: 134 NRKLIEITHEDLRALTDAIVEQGRPSTAVVCREIMMLVFRWAIERGQKVENPADLVRPST 193

Query: 166 RKT--EGIRPWTKEDMQQFKSFWS-EGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQ-- 218
                   R  T E++     +    G+ P  R A + LL + +R S+   A    +   
Sbjct: 194 IAKFEPRDRALTPEEIGLMYQYMERIGTLPSIRAAAKLLLLTMVRKSELTNATWSEINFI 253

Query: 219 NNIFSIKTQ--KTGTIITVELPDGFMKLLAMTPI---GKETFFINNDKQ--KMNATQFSI 271
           + +++I  +  K      V L    +++         G E    +       M++   + 
Sbjct: 254 DALWTIPKERMKRRNPHLVFLSRQVLEIFTALKTFAGGSEYVLPSRYDSDLPMSSATLNQ 313

Query: 272 WFKAKATKAGVNKS------AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
                   A            H +R+ ++T+  +AG     +      +       Y K 
Sbjct: 314 VLTLTYRLAQKEGQSLGKFGPHDLRRTASTLLHEAGYNTDWIEKCLAHEQKGVRAVYNKA 373

Query: 326 --ADRIRLGIKN 335
              D+ R  +++
Sbjct: 374 EYRDQRRAMLQD 385


>gi|149925456|ref|ZP_01913720.1| Phage integrase [Limnobacter sp. MED105]
 gi|149825573|gb|EDM84781.1| Phage integrase [Limnobacter sp. MED105]
          Length = 441

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 36/287 (12%), Positives = 93/287 (32%), Gaps = 37/287 (12%)

Query: 84  WGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSS---------- 132
           W    + ++       +  +I + G+     IT + +          P            
Sbjct: 82  WKRSNIRTKRD---ILEKWLIPQFGNRVISSITKQDLLEFRSVLAKAPGKKPETTMSASR 138

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
               +TS++ +   A  + +    P  +++R + K   + P+T E+++    +  E    
Sbjct: 139 INHVMTSVKQVLDEAADR-FNFTTPYQNIKRMRIKKTDVTPFTIEEVEMIIKYCREDF-- 195

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------------GTIITVELPDG 240
           R  F    ++G+R  +      +++      +  ++T             +   +++   
Sbjct: 196 RNYFTVKFFTGMRPGEIHGLKWKYIDFEKRLVTIRETIVDDYEETPKTADSNRDIQMAPQ 255

Query: 241 FMKLLAM----TPIGKETFFINNDKQKMNATQFSIW-FKAKATKAGVN-KSAHGVRKFSA 294
             + L      T       F N +   +     S   +       G+  ++ +  R   A
Sbjct: 256 VYEALKTQWEVTGKKSPFVFANGNGGPLTNRNMSNRVWYPMLRSLGLKLRTPYQTRHTFA 315

Query: 295 TISADAGATAHELMATYGWKTVDQA-ETYTKGA-DRIRLGIKNSRRI 339
           T+   AG +   +    G  + +   + Y++   +  R       R+
Sbjct: 316 TLMLAAGESPEWIAFQMGHSSTEMLFKVYSRYVPNLTRRDGSAFERM 362


>gi|313897159|ref|ZP_07830704.1| site-specific recombinase, phage integrase family [Clostridium sp.
           HGF2]
 gi|312958087|gb|EFR39710.1| site-specific recombinase, phage integrase family [Clostridium sp.
           HGF2]
          Length = 469

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 45/298 (15%), Positives = 100/298 (33%), Gaps = 43/298 (14%)

Query: 44  IPAYMSALTGSTPKREYINSPRKKPTT---LKWLISEYRKSAHWGSLAVNSRISFESYFD 100
           I  Y      +  K + +  P+ +         +  ++   + +  +  +++ + E    
Sbjct: 84  IKEYKKNYDENIAKAKGLFKPKTQTRKDRLFNSVCEDFL--SRYVDVKESTKKTKEDDLK 141

Query: 101 QIIRKSGDFDYRKITTKHIRS--GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158
           + I K GD D   IT++ ++        + +  S  +   +M  +F+ AV + Y+  NP 
Sbjct: 142 RPIAKFGDRDIVSITSEELQEYIWQLDYEISERSVKKIFYAMNPVFQLAVEKGYIPANPM 201

Query: 159 LSVERPKRKTEGIR---PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ 215
             V+R   K +       W  ++ Q F   + E  +    FEFL + G R  ++      
Sbjct: 202 SKVKRRINKDKPREEMKIWEPDEFQLFLDEFPEKDRFYYFFEFLYFMGTRSGEANALTWN 261

Query: 216 HLQNNIFSIKTQKT------------------GTIITVE--LPDGFMKLLAMTPI-GKET 254
            +  N  +++ +K+                     I++   + D   +L  +       T
Sbjct: 262 DIHFNENTVEIKKSVSFKLRPYKITSPKNPNAHRKISMPKRIHDSLKELYKLQKEYEGFT 321

Query: 255 F--FINNDKQKMNATQFSIWFKAKATKAGVN----------KSAHGVRKFSATISADA 300
              F+    + ++        + K   A                H  R   A+   + 
Sbjct: 322 LDCFVFGFDKPLDPETVRRVKREKVKAANEKDENKNNQLELIRVHDFRHSHASYLINN 379


>gi|283954436|ref|ZP_06371956.1| site-specific recombinase, phage integrase family [Campylobacter
           jejuni subsp. jejuni 414]
 gi|283794053|gb|EFC32802.1| site-specific recombinase, phage integrase family [Campylobacter
           jejuni subsp. jejuni 414]
          Length = 354

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 44/286 (15%), Positives = 94/286 (32%), Gaps = 52/286 (18%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           LI E   S   G+L+  S+ ++            D    +    HI              
Sbjct: 102 LIVEVLASIT-GALSDASKKNYRIAVINFFDFL-DKQNEEDEKAHIFDI----------- 148

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS------FWS 187
                    L  WA             V+ P          ++E++++F        F S
Sbjct: 149 --------NLKNWAGIAG------SKGVKLP-------EFMSEEELKKFLDAIENVDFRS 187

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVE----LPD 239
              + +L  + ++++G+R S++    +  +       I  I+ +     I +     + D
Sbjct: 188 NTIRNKLIIKIIIFTGIRVSEAINIKMGDISEENDLYIIRIRAKGNKYRIVMIKKELIYD 247

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATI 296
               +           F+N     +  +  S   +    +AG+ K    AH +R   AT+
Sbjct: 248 LLKNVSINYMSKDALLFVNKKGTPLTQSYVSRIVEQLLFRAGIRKQKNGAHMLRHTFATL 307

Query: 297 SADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSRRISS 341
                     +    G  +++ +  YT    D+++L  + ++ +S 
Sbjct: 308 LYKKQKDLVLVQEALGHASLNTSRIYTHFDNDKLKLAAQVAKELSD 353


>gi|238912520|ref|ZP_04656357.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Tennessee str. CDC07-0191]
          Length = 437

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 26/240 (10%), Positives = 73/240 (30%), Gaps = 46/240 (19%)

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
           ++  +  +   ++T++  +F++A    Y+  NP   ++  K+      P T+++  +   
Sbjct: 153 AKGRSVVTVNYYMTTIAGMFQFAADHGYIEANPFEGIKPFKKARAEPDPLTRDEFIRLID 212

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII----------- 233
                 Q +  +   +Y+G+R  +      + +     +I  ++  T +           
Sbjct: 213 AC-RHQQTKNLWSLAVYTGVRHGELTSLAWEDIDLEAGTITIRRNYTKLGEFTLPKTEAS 271

Query: 234 ----------TVELPDGFMKLLAMTPIGKETFFINNDKQK-------------------- 263
                      + +     ++  +         +    +                     
Sbjct: 272 TNRVIHLIQPAINVLKNQAEMTRLGKRHHIDVQLREYGRTEGHECTFVFNPQLIRRCQHV 331

Query: 264 ---MNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
                       + A   +AG+ ++ A+  R   A  S  AGA    + +  G  +    
Sbjct: 332 GFIYKVDSIGDLWDAAMKRAGIRHRKAYQSRHTYACWSLSAGANPSFIASQMGHASAQMV 391


>gi|295104858|emb|CBL02402.1| Site-specific recombinase XerD [Faecalibacterium prausnitzii SL3/3]
          Length = 329

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 39/286 (13%), Positives = 94/286 (32%), Gaps = 37/286 (12%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFD----QIIRKSGDFDYRKITTKHIRSGVES-RKH 128
               Y        L+ ++  ++ES F      ++   G+    ++  + I   +   +KH
Sbjct: 26  YWDRYETDMGIRDLSPSTVYNYESDFKQWMIYVLDNQGNAPVTELEEEDIEEFLFYCKKH 85

Query: 129 TPSSA--IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR--PWTKEDMQQFKS 184
             +SA   + ++++  L+++  +++ +  NP   ++RP +    ++    T ++++  + 
Sbjct: 86  GNNSARMKRRMSTISALYRYLRKKKIIKENPMEFIDRPTKDVAVVKQTYLTPDEVKLMRE 145

Query: 185 FW-------------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKT 229
                                RL   F L +  R +       +    +N +     +K 
Sbjct: 146 KLNTLVESATTVHMKDNAMTLRLYALFSLSTMARVNAVRNTLWKSIDYENRMVHDVLEKE 205

Query: 230 GTIITVELPDGFMKLLAMTPI--------GKETFFINNDKQ----KMNATQFSIWFKAKA 277
           G I+ +       +LL                  F+          + ++    W K   
Sbjct: 206 GKIVDLMFSKEVSELLKELKEYRTEHDIEDGGYVFVGTKINGVWMPITSSTAGDWCKKIG 265

Query: 278 T-KAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
                     H  R   AT+  +AG +  ++ +       D    Y
Sbjct: 266 EMIDEPTLHPHDFRHSGATLLKNAGMSLEDVSSLLNHAGTDVTNKY 311


>gi|254245077|ref|ZP_04938399.1| hypothetical protein PA2G_05963 [Pseudomonas aeruginosa 2192]
 gi|126198455|gb|EAZ62518.1| hypothetical protein PA2G_05963 [Pseudomonas aeruginosa 2192]
          Length = 397

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 40/298 (13%), Positives = 97/298 (32%), Gaps = 35/298 (11%)

Query: 57  KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKIT 115
            R     P     T+   +  + +S     ++ ++   +    + +++   G      + 
Sbjct: 69  PRAAKFVPEASRETVAGFLGRWLESKR-KHVSSSTFEGYRKIVELRLVPALGSAMVVDLK 127

Query: 116 TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS---VERPKRKTEGIR 172
            K ++  +++ K +  +     + +R     A+ +E +  NP        + + K + + 
Sbjct: 128 RKAVKDWLDTLKVSNKTLSNIQSCLRSALSDAMEEELIDSNPLAGWTYARKGEVKVDDVD 187

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT------ 226
           P++ E+ Q   S      Q R   +F  ++G+R S+        +      ++       
Sbjct: 188 PFSPEEQQAILSSLD--GQGRNLVQFAFWTGMRTSELVGLEWGDIDWLRGEVRVTRAMTQ 245

Query: 227 -QKTGTIIT--------VELPDGFMKLLAMTPIGKETFFINND-------KQKMNATQ-- 268
             K    +T        ++L    ++ L        T+  N +        ++       
Sbjct: 246 AAKGKAEVTKTTSGRRCIKLLGPALEALKAQK--AFTYLANQEVFQNPRTGERWAGDGPI 303

Query: 269 FSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQ-AETYTK 324
               +     KAGV  +  +  R   A++   AG     +    G       A  Y +
Sbjct: 304 RKTLWVYALKKAGVRYRRPYQTRHTYASMMLSAGEHPMWVAQQMGHSDWTMIARIYGR 361


>gi|329312769|gb|AEB87182.1| Transposase B [Staphylococcus aureus subsp. aureus T0131]
          Length = 609

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 43/290 (14%), Positives = 83/290 (28%), Gaps = 35/290 (12%)

Query: 71  LKWLISEY----RKSAHWGSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSG 122
            K L+  Y         +  ++  ++   E +F+ +  K           ++  +   S 
Sbjct: 197 FKQLVKRYCKLRLNMDSFSYVSDIAQKLKE-FFNFLDIKFKHVQRVHQLTRVEIEAYLSE 255

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV----ERPKRKTEGIRPWTKED 178
           +      PS+    ++ +  LF    R E+    P   +    + PK      R   +  
Sbjct: 256 LNMMGIKPSTITGRISILEGLFSTLHRLEW-DDVPSKLLIYPEDYPKIPRAKPRFIDEFV 314

Query: 179 MQQFKSFWS-EGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-----QNNIFSIKTQKTGTI 232
           ++Q  S               +   G+R S+ C      L      +        K    
Sbjct: 315 LEQLNSHLDKLPEYIATMTMIVQECGMRISELCTLKKGCLLEDKDGDYFLKYYQWKMKKE 374

Query: 233 ITVELPDGFMKLLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NK 284
             V +    + L+ +            E  F   D   +    F       A +  + +K
Sbjct: 375 HIVPISKEVVLLIKVREDKVSEEFPDSEYLFPRKDGSPLKQETFRGELNKLAYEQNIVDK 434

Query: 285 S-------AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           S       AH  R    T   + G   H +    G ++ +    Y    D
Sbjct: 435 SGEIYRFHAHAFRHTVGTRMINNGMPQHIVQKFLGHESPEMTSRYAHIFD 484


>gi|313897143|ref|ZP_07830688.1| site-specific recombinase, phage integrase family [Clostridium sp.
           HGF2]
 gi|312958071|gb|EFR39694.1| site-specific recombinase, phage integrase family [Clostridium sp.
           HGF2]
          Length = 284

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 39/252 (15%), Positives = 87/252 (34%), Gaps = 13/252 (5%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWA 147
           + N+   +    D +     + +  K      +  +      PS+   ++T +    K+A
Sbjct: 23  SKNTVRHYAHVLDLLYDFLPEGELNKTGIIEFKEHLLESGFEPSTVQNYITIVNKWLKYA 82

Query: 148 VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA-FEFLLYSGLRC 206
             + +   N  + V+      E      ++ M+  +     G +      E + Y+G+R 
Sbjct: 83  KMKRFTVTN--IKVQGKASLEEEELLTPEDFMRLLRQAKRMGRKQYCMIMEIMGYTGIRL 140

Query: 207 SDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK----LLAMTPIGKETFFI-NNDK 261
           S+     V++++     +     G I T+ +P    K     +    I     F    + 
Sbjct: 141 SELQYFTVENIRKPKLIVH--NKGKIRTIIMPTSLKKKIKKYIEEQGIESGYIFPGKKEG 198

Query: 262 QKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
             ++ T      +  A  A + K+    H  R   A    + G    +L    G   ++ 
Sbjct: 199 AMLHPTTVYKNIRKIAATAKIKKTKAHPHAFRHLFAVRYIEEGGQPSDLADILGHSQLET 258

Query: 319 AETYTKGADRIR 330
              YT+  D+++
Sbjct: 259 TAIYTRTTDKMK 270


>gi|312901390|ref|ZP_07760670.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0470]
 gi|311291553|gb|EFQ70109.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0470]
          Length = 393

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 51/324 (15%), Positives = 99/324 (30%), Gaps = 60/324 (18%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132
           WL  EY+K+    +     R   +     I+   G     ++T K ++  V         
Sbjct: 77  WL-DEYKKTVRESTFIATERRMKK----HILPTFGKMRLERLTVKIVQKSVNEWYKKNEM 131

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR-----KTEGIRPWTKEDMQQFKSFWS 187
               L+    +  +AV  E +  NP   + +P       K    + +TK++++ F +   
Sbjct: 132 GKVLLSYASRVCDYAVGLEIIDSNPFKKITKPSSLKKVEKNTKRKFYTKDELEHFLNTAD 191

Query: 188 EGSQPR---------------LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT--- 229
             +                    F  L ++G+R  ++       +      +   KT   
Sbjct: 192 SIANQAKEESLVLKYYADLDCAIFRLLSFTGIRVGEALALNWNDIDLKKQVVNINKTTAI 251

Query: 230 ---GTIITVELPD----------------------GFMKLLAMTPIGKETFFINNDKQKM 264
              G  I                                L+       +  F   D    
Sbjct: 252 STNGLTINDPKTPNSIRKISFDNKTAYILKKWKLRQREALMKKGGFKTQLIFTKIDGTMF 311

Query: 265 NATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADA-GATAHELMATYGWKTVDQA-E 320
            +       K  A KA ++ S   HG R   AT+  ++    +  +    G  ++    +
Sbjct: 312 RSQDIYQRSKRLAEKANLH-SIGCHGFRHTHATLLFESDNVRSKIIQERLGHSSLQITMD 370

Query: 321 TYTKGADRIRLGIKNSRRISSVVD 344
           TYT  +D   +  + +   SS V+
Sbjct: 371 TYTHVSD--EVTKEATDAFSSYVN 392


>gi|288551749|gb|ADC53346.1| transposase B [Staphylococcus aureus]
 gi|288551789|gb|ADC53385.1| transposase B [Staphylococcus aureus]
 gi|329315329|gb|AEB89742.1| Transposase B [Staphylococcus aureus subsp. aureus T0131]
          Length = 630

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 43/290 (14%), Positives = 83/290 (28%), Gaps = 35/290 (12%)

Query: 71  LKWLISEY----RKSAHWGSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSG 122
            K L+  Y         +  ++  ++   E +F+ +  K           ++  +   S 
Sbjct: 218 FKQLVKRYCKLRLNMDSFSYVSDIAQKLKE-FFNFLDIKFKHVQRVHQLTRVEIEAYLSE 276

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV----ERPKRKTEGIRPWTKED 178
           +      PS+    ++ +  LF    R E+    P   +    + PK      R   +  
Sbjct: 277 LNMMGIKPSTITGRISILEGLFSTLHRLEW-DDVPSKLLIYPEDYPKIPRAKPRFIDEFV 335

Query: 179 MQQFKSFWS-EGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-----QNNIFSIKTQKTGTI 232
           ++Q  S               +   G+R S+ C      L      +        K    
Sbjct: 336 LEQLNSHLDKLPEYIATMTMIVQECGMRISELCTLKKGCLLEDKDGDYFLKYYQWKMKKE 395

Query: 233 ITVELPDGFMKLLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NK 284
             V +    + L+ +            E  F   D   +    F       A +  + +K
Sbjct: 396 HIVPISKEVVLLIKVREDKVSEEFPDSEYLFPRKDGSPLKQETFRGELNKLAYEQNIVDK 455

Query: 285 S-------AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           S       AH  R    T   + G   H +    G ++ +    Y    D
Sbjct: 456 SGEIYRFHAHAFRHTVGTRMINNGMPQHIVQKFLGHESPEMTSRYAHIFD 505


>gi|224482566|gb|ACN50139.1| integrase [Vibrio cholerae]
          Length = 361

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 52/335 (15%), Positives = 109/335 (32%), Gaps = 35/335 (10%)

Query: 22  IYYF-----RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK---PTTLKW 73
            Y F     R  HG    L        +    + L      + Y+   R K     + + 
Sbjct: 6   RYRFDGAKQRVDHGTYPTLELAEAKDELDKLRAVLDQGETPKLYLQQERPKYSANQSFES 65

Query: 74  LISEYRKSAHWGSLAVNS-RISFESYFDQIIRKSGDFDYRKITTKHIRS-GVESRKHTPS 131
           +  ++  SA    L   +      S    ++ + G +    I    +R+   E  + +PS
Sbjct: 66  IFRDWIDSAGKQGLKEKTWHYQKRSSEIYLLPRLGKYPLTDINELSLRNCLREVSESSPS 125

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK---RKTEGIRPWTKEDMQ---QFKSF 185
           +  + ++ +   + W + ++ + IN    +   K   +K +  R     +++   ++   
Sbjct: 126 NTERLVSVLHKFYDWLIDEQILEINAAAGITAKKVSGKKGKRTRVLNDNEIRILWRYLHE 185

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN--------IFSIKTQKTGTIITVEL 237
                + R+  + LL  G R  +  +A   H                + +K G  I   L
Sbjct: 186 SKITEKNRIYIKLLLLLGGRKGELIQAEKHHFDLQSAMWTEPIEIRKQGEKIGAPIMRPL 245

Query: 238 PDGFMKLLA-MTPIGKETFFINNDKQK-MNATQF--------SIWFKAKATKAGVNKSAH 287
               ++L+     + K T+    + Q+ +    F         IW +   +    + S H
Sbjct: 246 IKPAIELIELAMQMSKSTYLFPANGQEELATNGFDTTIPNNVKIWARRSLSVEMEHWSMH 305

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
            +R+   T  + A  T        G         Y
Sbjct: 306 DLRRTMRTRMS-AITTQEVAELMIGHSKKGLDAIY 339


>gi|208743365|ref|YP_002267816.1| site-specific tyrosine recombinase XerS [Bacillus cereus]
          Length = 361

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 52/325 (16%), Positives = 100/325 (30%), Gaps = 55/325 (16%)

Query: 67  KPTTLKWLISEYRKSAHWG---SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
            P TL   I+E+ K   W     LAV +     +  D  I    +        +  +  +
Sbjct: 35  SPATLYAYITEFEKFLKWLISNRLAVENGKVVTNICDVPISTLENLPLN--EARTFQRYL 92

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQ-------EYVAINPCLSVERPKRKTEGIRPW-- 174
           +       +  +  ++++ LFK+  +         Y++ N    +E  K K +       
Sbjct: 93  QGEGIETRAINRTFSALKSLFKYLAQNTENEQGENYISRNVMDKIELHKEKVDAAARADD 152

Query: 175 -------TKEDMQ--QFKS-----------------FWSEGSQPRLAFEFLLYSGLRCSD 208
                   K+D+   QF +                 F  +  +       +L +GLR S+
Sbjct: 153 VANMIFNEKDDVAFLQFLANDYGEMLKDISPKKYSFFQRDKERDIAIISLILGTGLRVSE 212

Query: 209 SCRAGVQHLQNNIFSIKTQKTGTI-----ITVELPDGFMKLLAMTPI------GKETFFI 257
                +  +      +K  + G        T    D   + + + P        ++  F+
Sbjct: 213 VASLTISSINFRQGKVKVTRKGNKRSSVLATRSCLDDVQEYIKVRPSKYNCPQDEDLLFV 272

Query: 258 NNDKQKMNATQFSIWFK---AKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWK 314
            N K K          K     ++     +S H +R   AT           L    G  
Sbjct: 273 TNYKGKYTQLTVRAIQKLCDKYSSAFDEKRSPHKLRHTYATNHYKENKDLVLLRDQLGHT 332

Query: 315 TVDQAETYTKGAD-RIRLGIKNSRR 338
           +V+    YT   + + R  +    R
Sbjct: 333 SVEVTSIYTNINNEKKREAVDCLER 357


>gi|157691370|ref|YP_001485832.1| integrase [Bacillus pumilus SAFR-032]
 gi|157680128|gb|ABV61272.1| integrase [Bacillus pumilus SAFR-032]
          Length = 425

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 59/379 (15%), Positives = 119/379 (31%), Gaps = 59/379 (15%)

Query: 1   MTPSLRLPPFVTKERTRHGKIIYY----FRKGHGRRIRLPY---PHESTFIPAYMS--AL 51
           M        +        G+  Y       +  G+RIR       +   F  A+ +   L
Sbjct: 1   MKKKQEKTKYPGVYIDEKGRFFYQSEFGIDRITGKRIRKKGRKDANGKPFASAFEANKEL 60

Query: 52  TGSTPKREYINSPRKKPTTLKWLISE----YRKSAHWGSLAVNSRISFESYFDQIIRKSG 107
           T    +   +N+      T +  +++    Y ++     +  ++    E   ++I  + G
Sbjct: 61  TRLKREYHKVNNFSNYKMTYEQFMNQVYIPYYQT----EVEESTFEVREGILEKIKDRFG 116

Query: 108 DFDYRKITTKHIRSGVESR---------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158
               R I+ + +++               ++ S A       R     AV  +Y+  N  
Sbjct: 117 SMSLRSISIEDVQNFRTWLLTSKKRGGAGYSQSYASMVFGVFRQSLDKAVDMQYLEYNIS 176

Query: 159 LSVERPKRKTEGIRPWTKEDMQQ-FKSFWSEGSQPRLAFEFL---LYSGLRCSDSCRAGV 214
             V+   +    +  WTKE+ +Q     + +     L F  +     +G+R ++      
Sbjct: 177 KKVKAIPKGKAVVAYWTKEEFEQVINQIYIDDFYEHLNFVMIWVYYMTGIRVNEGTALNW 236

Query: 215 QHLQNNIFSIKTQ-----KTGTI-------------ITVELPDGFMKLLAMTPIGKET-- 254
             +      ++       KT T               T+ L D  + +L +    + T  
Sbjct: 237 SDIDLKKKRMRVHHMLILKTRTEWKRNSYTKTEDGKRTIALDDDTINILKVWRERQLTIG 296

Query: 255 ------FFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISA-DAGATAHE 306
                 F  + D   M  +         A  AGV K  A G+R   A+    +   +   
Sbjct: 297 LGKVDDFVFSYDGLPMIKSTIGRMLSRYAKLAGVKKIQAKGLRHSHASYLINEFNVSVLV 356

Query: 307 LMATYGWKTVDQA-ETYTK 324
           L    G  + +   + Y  
Sbjct: 357 LSQRMGHSSPEITLKHYAH 375


>gi|148258966|ref|YP_001243551.1| putative phage integrase [Bradyrhizobium sp. BTAi1]
 gi|146411139|gb|ABQ39645.1| putative phage integrase [Bradyrhizobium sp. BTAi1]
          Length = 451

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 49/351 (13%), Positives = 97/351 (27%), Gaps = 46/351 (13%)

Query: 21  IIYYFRKGHGRR--IRLPYPHESTFIPAYMSALTGSTPKREYINSPR---KKPTTLKWLI 75
           +I Y   G  RR  I L                 G   K +     R    +  T+K L 
Sbjct: 42  VIQYRAAGRSRRYTIGLHGVWTPETARQEAKVQLGRVAKGDNPAEERELDHRAITVKELC 101

Query: 76  SEYRKSAHW--------GSLAVNSRI-SFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
           + Y                    + +         I+   G    + +T   +   ++  
Sbjct: 102 NLYLNDLSAGLILGKRGRPKKPTTIVTDTGRIHRHIVPIIGTRRVKDLTKADVGKVLKDI 161

Query: 127 --------------------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
                               +    +A + +  +  +  +AV    +  NP   + +PK 
Sbjct: 162 MAGKTRTTVKTKKLRGKSIVRGGVGTATRTVGLLGGILTYAVEAGIIETNPAHGIRKPKD 221

Query: 167 KTEGIRPWTKEDMQQFKSFWSE-------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN 219
           +    R  ++ + +       E        +   +  +  L +G R S+  +     +  
Sbjct: 222 RVRTRR-LSEAEYRTLGQLLREKGEQEKYTTTVDIVRQIAL-TGCRRSEIIQLRWSEVDT 279

Query: 220 NI--FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKA 277
                 ++  K G  I          L         T+      +      F   +K   
Sbjct: 280 EASCLRLEDSKEGESIRAIGLPVVEYLERRRACAVGTYVFPGQGEDNAFGSFPNHWKQIF 339

Query: 278 TKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
            K+ + + + H +R   A+I+ D G T   + A  G         Y    D
Sbjct: 340 KKSPLADITPHVLRHSFASIANDLGFTEVTIAALVGHAKGSVTSKYIHTLD 390


>gi|317180442|dbj|BAJ58228.1| integrase-recombinase protein [Helicobacter pylori F32]
          Length = 355

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 35/284 (12%), Positives = 93/284 (32%), Gaps = 55/284 (19%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           L++E+  S + G L++ ++ ++      +       +  +    +I              
Sbjct: 101 LLAEFL-SVYTGGLSLATKKNYRIALLGLFSYIDKQNQDENEKSYIY------------- 146

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS-------FW 186
              L ++  + + A                     +       E++++F           
Sbjct: 147 NITLKNISGVNQSA-------------------GNKLPTHLNNEELEKFLEGIDKIEMSA 187

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDG---- 240
              ++ RL  + ++++G+R +++ +  ++    +N  ++I  +  G      +       
Sbjct: 188 KVRARNRLLIKIIVFTGMRSNEALQLKIKDFTLENGCYTILIKGKGDKYRAVMLKAFHIE 247

Query: 241 --FMKLL---AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKF 292
               + L    + P+  +  F N     +         +     AG+ +    AH +R  
Sbjct: 248 SLLKEWLIERELYPVKNDLLFCNQKGDALTQAYLYKQVERIINFAGLRREKNGAHMLRHS 307

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
            AT+          +    G  +++ +  YT   D+ RL    S
Sbjct: 308 FATLLYQKRHDLILVQEALGHASLNTSRIYTH-FDKQRLEEAAS 350


>gi|315122579|ref|YP_004063068.1| phage-related integrase/recombinase [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495981|gb|ADR52580.1| phage-related integrase/recombinase [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 78

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 43/71 (60%), Positives = 55/71 (77%)

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE 253
           +AFE  LY+GLRCSD CR   QH + N+FSI+TQK  TI+TVELP+  +KLL +TP GKE
Sbjct: 1   MAFELCLYTGLRCSDVCRVSRQHFKGNVFSIQTQKVWTIVTVELPEIVIKLLEITPTGKE 60

Query: 254 TFFINNDKQKM 264
           TF +N +K+KM
Sbjct: 61  TFIVNREKEKM 71


>gi|255524972|ref|ZP_05391919.1| integrase family protein [Clostridium carboxidivorans P7]
 gi|255511344|gb|EET87637.1| integrase family protein [Clostridium carboxidivorans P7]
          Length = 323

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 42/287 (14%), Positives = 93/287 (32%), Gaps = 24/287 (8%)

Query: 59  EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH 118
             I   +    T+  +  E+  +     L   +   +E   +   +     D+     + 
Sbjct: 10  PDIQQKKYPNITIAKVQEEFENNLKERQLRPATFRFYEEILNVFYKFKNYNDFINTIDQS 69

Query: 119 IRSGVES-----RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
                       R +  ++    +  +R    +A+ + Y+   P   ++ P    +    
Sbjct: 70  TIMNFMKYCKTERNNGINTIHTNIRGLRTFLYFAMEKGYL---PKFKIKVPSPDLQPKET 126

Query: 174 WTKEDMQQFKSFWSEGS------QPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK 225
           ++KED+Q+     +            +A    +++G+R S +    V+ +   NNI   +
Sbjct: 127 YSKEDIQKLLLKPNLSKCNFSEYVAYVAVNIFVFTGMRLSTAINLKVEDIDLNNNIIYYR 186

Query: 226 TQKTGTIITVELPDGFMK-------LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKAT 278
             K      V L     +       LL+   +  E F I    +++ + +   +      
Sbjct: 187 HTKNNKPHIVPLVHNLKEVVNEYLNLLSSQGVMNEYFLITPYGEQLTSNKLYKYISTYNK 246

Query: 279 KAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           K  V   S H  R+F             ++      K+ +    YTK
Sbjct: 247 KRNVEITSIHAFRRFYIKSLVLQNVPIPKIQFLVQHKSPELITLYTK 293


>gi|238063317|ref|ZP_04608026.1| phage integrase [Micromonospora sp. ATCC 39149]
 gi|237885128|gb|EEP73956.1| phage integrase [Micromonospora sp. ATCC 39149]
          Length = 340

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 50/147 (34%), Gaps = 13/147 (8%)

Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-----VELPDGFMKLLAMT------ 248
             +G+R S++C      + ++   ++    G+        V         L         
Sbjct: 187 YATGVRVSEACGLDTADVDHSRRVVRVLGKGSRERSVPYGVPAQRALDDWLQAGRPVLTG 246

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS-AHGVRKFSATISADAGATAHEL 307
           P       +     +++ T         A  AG+ ++  HG+R  +AT   + GA    +
Sbjct: 247 PGSGGALLLGARGGRLHPTMARRIVAGYAEAAGLPRTTPHGLRHSAATHLLEGGADLRAV 306

Query: 308 MATYGWKTVDQAETYTK-GADRIRLGI 333
               G  ++   + YT    +R+R   
Sbjct: 307 QELLGHSSLASTQIYTHVSVERLRAAY 333


>gi|256818992|ref|YP_003140271.1| integrase family protein [Capnocytophaga ochracea DSM 7271]
 gi|256580575|gb|ACU91710.1| integrase family protein [Capnocytophaga ochracea DSM 7271]
          Length = 411

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 36/281 (12%), Positives = 91/281 (32%), Gaps = 34/281 (12%)

Query: 90  NSRISFESYFDQIIRKS------GDFDYRKITTKHIRSG----VESRKHTPSSAIQFLTS 139
           ++   +E+ +  +           D  ++++T   I         ++  T ++   ++  
Sbjct: 136 STLNKYENVYTHLSEFIQYKYRRSDISFKELTEDFINDFDFYLRVNKSLTHNTIWVYMMP 195

Query: 140 MRVLFKWAVRQEYVAINPCLS-VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEF 198
           +  + + A+ +  +  NP  + +   + K  G     +E+++    +  + +   L  + 
Sbjct: 196 LCKMVEIAIDKGIIYRNPFKNYISSMEEKDRGY--LLREEVETLLQYHPKSASAELVRDL 253

Query: 199 LLY---SGLRCSDSCRAGVQHL-----QNNIFSIKTQKTGTIITVELPDGFMKLLAM--T 248
            ++   +G    D  +    HL      N     + QK+     V L D   K++     
Sbjct: 254 FVFSCFTGFSYIDIKQLKRSHLQSFFDGNKWLIKRRQKSDVPCNVRLLDIAEKIIEKYEG 313

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV----NKSAHGVRKFSATISADAGATA 304
               E  F        +    ++  K       +      S H  R    T+    G   
Sbjct: 314 TTRTEALFPT-----PSNANCNLLIKKMMKDCNIIREKPISFHWARHTFGTLFLTEGVPL 368

Query: 305 HELMATYGWKTVDQAETYTKGADRI--RLGIKNSRRISSVV 343
             +    G K +   + Y K  +    +     + R+ ++ 
Sbjct: 369 ESVSKMMGHKNIKTTQIYAKITNEKISKDMEIAAERLKNLK 409


>gi|225573339|ref|ZP_03782094.1| hypothetical protein RUMHYD_01531 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039252|gb|EEG49498.1| hypothetical protein RUMHYD_01531 [Blautia hydrogenotrophica DSM
           10507]
          Length = 408

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 55/323 (17%), Positives = 100/323 (30%), Gaps = 53/323 (16%)

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRSGVES 125
           K  T+  L  +Y +    G++   ++ S +     +   K G      +     +     
Sbjct: 68  KKMTVCQLYEKYTR--QRGNVRKGTQKSRQQLMKLLSEDKLGAASIDSVKLSDAKEWALR 125

Query: 126 RKHTPSSAIQF---LTSMRVLFKWAVRQEYVAINPCL-SV-ERPKRKTEGIRPWT---KE 177
            +    +         S++ +F  AV+ + +  NP    + E     T    P T   + 
Sbjct: 126 MQEKGVAYNTICNSKRSLKAIFYMAVQDDCLRKNPFDFQINEVINDDTVPKVPLTPTQEN 185

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----------------NNI 221
           ++  F    S  ++       LL +GLR S+ C      L                  + 
Sbjct: 186 ELLDFMQNDSVYAKYYDEVVILLETGLRISELCGLTPADLNFEKRFVNVDHQLLRSTEDG 245

Query: 222 FSIKTQKTGTIIT-VELP----DGFMKLLAMTPIG--------KETFFINNDKQKMNATQ 268
           + I+  KT +    V +     + F ++L     G        K+  F+N D     A  
Sbjct: 246 YYIEAPKTESGFRQVPMSAAAYEAFERVLKKRRDGKGIEVDGYKDFLFLNRDGLPKTAVN 305

Query: 269 FSIWFKAKATKAGVNK----------SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           +   FK        NK          + H +R    T  A+AG     L    G   +  
Sbjct: 306 YDAMFK--CLAKKYNKCHKEPLPDVMTPHTMRHTFCTRMANAGMNPKALQYIMGHANIVM 363

Query: 319 AETYTKGADRIRLGIKNSRRISS 341
              Y   A       +   R+ +
Sbjct: 364 TLNYYAHATFHS-AQEEMERLQA 385


>gi|156932834|ref|YP_001436750.1| hypothetical protein ESA_00630 [Cronobacter sakazakii ATCC BAA-894]
 gi|156531088|gb|ABU75914.1| hypothetical protein ESA_00630 [Cronobacter sakazakii ATCC BAA-894]
          Length = 399

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 36/249 (14%), Positives = 80/249 (32%), Gaps = 15/249 (6%)

Query: 92  RISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS--SAIQFLTSMRVLFKWAVR 149
           +  + S    +    G    ++I  + I   +   K   +  +  + +  +  +  +AV 
Sbjct: 128 KDIWRSLDKDVFPAIGALPVQEIKARTIIEALGPIKARGALETVRRLVQRINEIMIYAVN 187

Query: 150 QEYVAINPCLSVERP--KRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLAFEFLLYSGL 204
              +  NP   V     K K + +     E++ +        +     R   E+ L + +
Sbjct: 188 TGLIDANPASGVGMAFEKPKKQNMPTLRPEELPKLMHSLVMSNLSIPTRCLIEWQLLTLV 247

Query: 205 RCSDSCRAGVQHLQNNIFSIK----TQKTGTIITVELPDGFMKLLAMTP---IGKETFFI 257
           R S++       +  +           K      V L    +++L +       +E  F 
Sbjct: 248 RPSEASGTRWAEIDLDARLWTIPAERMKAKREHIVPLSPQALEILKVMKPISAHREHVFP 307

Query: 258 NNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVD 317
           + +  K      +     K    G    AHG+R  ++T   +AG     + A       +
Sbjct: 308 SRNNPKQAMNSQTANAALKRIGFGGKLVAHGLRSIASTAMNEAGLNPDVIEAALAHSDKN 367

Query: 318 QAET-YTKG 325
           +    Y + 
Sbjct: 368 EVRKAYNRS 376


>gi|126726971|ref|ZP_01742809.1| site-specific recombinase, phage integrase family protein
           [Rhodobacterales bacterium HTCC2150]
 gi|126703643|gb|EBA02738.1| site-specific recombinase, phage integrase family protein
           [Rhodobacterales bacterium HTCC2150]
          Length = 332

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 35/243 (14%), Positives = 68/243 (27%), Gaps = 16/243 (6%)

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIR 120
            +P    TTLK     +            +  +        I+   G      +  + + 
Sbjct: 91  AAPPDPNTTLKDFAERFLADCQ-HQWKPATLKAHARCMRVHIVPVLGTMRVAALRRQDVL 149

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYV--AINPCLSVERP-------KRKTEGI 171
                   +  +  + L  +  L + A          NPC  + R            +G 
Sbjct: 150 KWRRGLIGSAGTGNRVLAVLSGLMRHAELLGLRRPGENPCAGLRRHQSDFKAEYLDADGY 209

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
           +        Q  +F     Q      F+L++G R  ++  A          S+   K G 
Sbjct: 210 KRLNDVLCAQANAF----PQAVACIRFILFTGCRKGEAKAARWDQHDGPRISLPDAKAG- 264

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRK 291
             ++ +      LLA  P      F  ++ + +      +W   +          H +R 
Sbjct: 265 PKSLWMGKPVRNLLASLPRTGSAIFAGDNPKGLEVELSQLWKIVRRDLKRPKLRIHDLRH 324

Query: 292 FSA 294
             A
Sbjct: 325 SFA 327


>gi|325851800|ref|ZP_08171002.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
 gi|325484711|gb|EGC87622.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
          Length = 439

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 51/331 (15%), Positives = 109/331 (32%), Gaps = 47/331 (14%)

Query: 38  PHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKS-AHWGSLAVNSRISFE 96
           P +     A+ +      P  E +   +  P T   +  E+ +          ++   F 
Sbjct: 108 PTQEQIKEAFNAL---HKPIEEEVKPRKSMPNTFYKVFDEFVRDCGRQNDWTDSTYEKFA 164

Query: 97  SYFDQIIRKSGDFDYRKITTKHIRSG----VESRKHTPSSAIQFLTSMRVLFKWAVRQEY 152
           +  + ++    +  +     + + +      + ++   S+  + L+ ++   +WA ++  
Sbjct: 165 AVKNHLMNFRDELTFDFFDERGLNNYVTYLRDVKEMRNSTIGKQLSFLKWFLRWAFKKGV 224

Query: 153 VAINPCLSVERPKRKT--EGIRPWTKEDMQQFKSFWSEGS-----QPRLAFEFLLYSGLR 205
              N      +PK K+  + I   T E++ + + F    +     + R  F F  ++GLR
Sbjct: 225 HQNN-AYDSYKPKLKSTQKKIIFLTWEELNKLREFEIPTTKQALDRVRDVFLFQCFTGLR 283

Query: 206 CSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI---GKETFFINNDKQ 262
            SD        ++ +   + T KT   + +EL +    +L          +        Q
Sbjct: 284 YSDVFNLRRSDIKGDHIEVTTVKTSDSLIIELNNHSKAILDKYKDVAFEDDKVLPVITNQ 343

Query: 263 KMNATQFSIWFKAKATKAGVN-----------------------KSAHGVRKFSATISAD 299
           KMN      + K  A  AG++                          H  R+     +  
Sbjct: 344 KMN-----DYLKELAELAGIDEPVRQTYYRGNERIDEVTPKYALLGTHAGRRTFICNALA 398

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIR 330
            G     +M   G       + Y   AD I+
Sbjct: 399 LGIPPQVVMKWTGHSDYKAMKPYIDIADDIK 429


>gi|313158681|gb|EFR58070.1| site-specific recombinase, phage integrase family [Alistipes sp.
           HGB5]
          Length = 389

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 44/283 (15%), Positives = 90/283 (31%), Gaps = 28/283 (9%)

Query: 70  TLKWLISEYRK---SAHWGSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVE 124
           T    ++++RK        S   N R         +  +    D  ++++  + +   V 
Sbjct: 112 TFDEYLADFRKRVGKDRAYSSYDNYRKRRNRLASFLEYEYHVKDIAFKELKREFVEKFVV 171

Query: 125 SRKHTPSSAI----QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                   A       L  ++++   A +  ++A +P       + +    R  +  ++Q
Sbjct: 172 YLSTVKGLASGTIHSTLKKLKLMTYTAYKNGWIAADPFAGF-YVRPEYSERRYLSASELQ 230

Query: 181 QFKSFWSEGSQ---PRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTI 232
                     +    R AF F  ++GL  +D  +     +  +         + QKTGT 
Sbjct: 231 AVIDVRLPNYRTGINRDAFVFCAFTGLSHADVVKLTHADIHTDDNGERWIIDRRQKTGTQ 290

Query: 233 ITVELPDGFMKLLAMTPI---GKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAH 287
             V+L      L           +  F             ++  +  A  AG+  N + H
Sbjct: 291 FRVKLLPVAEMLYERYKDMHLSGDRVFPLKG----TYNTLNMSLRHVARHAGLSFNPTIH 346

Query: 288 GVRKFSAT-ISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             R   AT ++   G     +    G K +   + Y K  +  
Sbjct: 347 LARHTFATTVTLTQGVPLETVSKMLGHKQITTTQIYAKITNDK 389


>gi|299146487|ref|ZP_07039555.1| integrase [Bacteroides sp. 3_1_23]
 gi|298516978|gb|EFI40859.1| integrase [Bacteroides sp. 3_1_23]
          Length = 409

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 46/266 (17%), Positives = 88/266 (33%), Gaps = 35/266 (13%)

Query: 90  NSRISF---ESYFDQIIR---KSGDFDYRKITTKHIRSG----VESRKHTPSSAIQFLTS 139
            +   +     +  + I+      D   ++I+   I         + K   ++  +F+  
Sbjct: 129 ATYRKYEVTRRHLAEFIQSKYNVSDISIKEISPMFITDFELYLRTACKCGYNTTAKFMQF 188

Query: 140 MRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQQFKS---FWSEGSQPRLA 195
            + +   A     +  +P  S + R ++   G    T+++++               R  
Sbjct: 189 FKRIIIIARNNGILVGDPFASYKIRLEKVDRGY--LTEDEIKIILKKKMVSERLEHVRDL 246

Query: 196 FEFLLYSGLRCSDSCRAGVQHL-----QNNIFSIKTQKTGTIITVELPDG----FMKLLA 246
           F F  + GL  SD      +++      N     K QKT T + V L D       K   
Sbjct: 247 FVFSCFCGLAYSDVANLRQENIQKSFDGNLWIITKRQKTNTDVNVPLLDIPKMILKKYKG 306

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS-ADAGAT 303
             P GK    I+N K        + + K  A   G+ K  + H  R   AT +    G  
Sbjct: 307 KLPDGKILPVISNQK-------LNAYLKEIADICGIKKNLTFHLARHTFATTTTLSKGVP 359

Query: 304 AHELMATYGWKTVDQAETYTKGADRI 329
              +    G   ++  + Y +  +  
Sbjct: 360 IETVSKMLGHTNIETTQIYARITNSK 385


>gi|295087488|emb|CBK69011.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A]
          Length = 409

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 46/266 (17%), Positives = 88/266 (33%), Gaps = 35/266 (13%)

Query: 90  NSRISF---ESYFDQIIR---KSGDFDYRKITTKHIRSG----VESRKHTPSSAIQFLTS 139
            +   +     +  + I+      D   ++I+   I         + K   ++  +F+  
Sbjct: 129 ATYRKYEVTRRHLAEFIQSKYNVSDISIKEISPMFITDFELYLRTACKCGYNTTAKFMQF 188

Query: 140 MRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQQFKS---FWSEGSQPRLA 195
            + +   A     +  +P  S + R ++   G    T+++++               R  
Sbjct: 189 FKRIIIIARNNGILVGDPFASYKIRLEKVDRGY--LTEDEIKIILKKKMVSERLEHVRDL 246

Query: 196 FEFLLYSGLRCSDSCRAGVQHL-----QNNIFSIKTQKTGTIITVELPDG----FMKLLA 246
           F F  + GL  SD      +++      N     K QKT T + V L D       K   
Sbjct: 247 FVFSCFCGLAYSDVANLRQENIQKSFDGNLWIITKRQKTNTDVNVPLLDIPKMILKKYKG 306

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS-ADAGAT 303
             P GK    I+N K        + + K  A   G+ K  + H  R   AT +    G  
Sbjct: 307 KLPDGKILPVISNQK-------LNAYLKEIADICGIKKNLTFHLARHTFATTTTLSKGVP 359

Query: 304 AHELMATYGWKTVDQAETYTKGADRI 329
              +    G   ++  + Y +  +  
Sbjct: 360 IETVSKMLGHTNIETTQIYARITNSK 385


>gi|283797481|ref|ZP_06346634.1| putative integrase [Clostridium sp. M62/1]
 gi|291074849|gb|EFE12213.1| putative integrase [Clostridium sp. M62/1]
 gi|295090011|emb|CBK76118.1| Site-specific recombinase XerD [Clostridium cf. saccharolyticum
           K10]
          Length = 334

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 45/320 (14%), Positives = 101/320 (31%), Gaps = 56/320 (17%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE 124
           ++  T+K L   +  S    S+  ++   + +  +  I  + G+    K+T + I   V 
Sbjct: 17  RREMTVKSLCEIWEASVR-SSVKPSTYACYVTLIEKHIQAELGNMSAGKLTNRVILEFVR 75

Query: 125 SRKHTPSSAIQ---FLTSMRVLFKWAVRQEYVAINPCLSV--ERPKRKTEGIRPWTKEDM 179
            ++    SA      L  ++ + +    +      P   +   +P++ + G       + 
Sbjct: 76  KKQRQGLSAGTVRLLLFLLKRIVQAGKERGIW---PAEELSFRQPRQLSGGK---NIMEW 129

Query: 180 QQFKSFWSEGSQPRLAFEF----LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII-- 233
           + F    S     R +F+      L +G+R  + C      +      ++ ++T + I  
Sbjct: 130 EDFHKILSYLLHSRRSFDLGLLISLSTGIRVGELCGIKWGDIDLKAGILRVRRTVSRIRN 189

Query: 234 -------------------------------TVELPDGFMKLLAMTPI----GKETFFIN 258
                                           + LP   ++ L           + + + 
Sbjct: 190 VDIEEQQKPFPAKQSRTIIQIGPPKTETSVRDIPLPQFLVERLRERQEERRFSSQAYVLT 249

Query: 259 NDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVD 317
              Q M        FK    K G+   + H +R   A+   + G  +  L    G  +V 
Sbjct: 250 GRAQFMEPRGVQRRFKNLLKKCGIEPVNIHSLRHSFASKWIENGFDSKALSEILGHSSVK 309

Query: 318 QA-ETYTKGADRIRLGIKNS 336
              + Y   + R +    + 
Sbjct: 310 ITMDIYVHSSMRQKKSYMDR 329


>gi|182627230|ref|ZP_02954933.1| tyrosine recombinase XerD [Clostridium perfringens D str. JGS1721]
 gi|177907367|gb|EDT70067.1| tyrosine recombinase XerD [Clostridium perfringens D str. JGS1721]
          Length = 280

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 38/262 (14%), Positives = 81/262 (30%), Gaps = 32/262 (12%)

Query: 85  GSLAVNSRISFES---YFDQIIRKSGDFDYRKITT-------KHIRSGVESRKHTPSSAI 134
             L + +   +E    YF + I+   D +  ++         K  +  +E  K+ PS+  
Sbjct: 16  RGLTLETTKRYEREIKYFLKFIKIKTDKELSELLEDEIKMCLKKYKMTLEKEKYKPSTIN 75

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP--WTKEDMQQFKSFWSEGSQP 192
             +  +    ++    E          +  K + +       ++ +  +  +      + 
Sbjct: 76  GKIIIINKFLRFC-EIEVKE-------KCVKIQKKPYITNVLSESEYLRLLNVCD-NFRD 126

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA------ 246
           ++    L  +GLR S+     ++ + N    IK  K             +KL+       
Sbjct: 127 KVIIRVLANTGLRVSELLSLEIREIYNGDIQIK-GKGAKYRECFCSSEIIKLIKQYIETE 185

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATISADAGAT 303
                K   F    K  +     +      A KA + K     H +R       A+   +
Sbjct: 186 RLETDKSKVF-TGRKGALKRQAINKMLFKYAKKAHIKKEKAHPHSLRHLFGKNLAERRVS 244

Query: 304 AHELMATYGWKTVDQAETYTKG 325
              +    G + +     YTK 
Sbjct: 245 LDVIKTFMGHEDIRTTAIYTKR 266


>gi|162448726|ref|YP_001611093.1| integrase/recombinase [Sorangium cellulosum 'So ce 56']
 gi|161159308|emb|CAN90613.1| Integrase/recombinase [Sorangium cellulosum 'So ce 56']
          Length = 316

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 48/313 (15%), Positives = 91/313 (29%), Gaps = 58/313 (18%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           LI   R +      +  +  ++  +  Q IR       R++  + + + +        +A
Sbjct: 3   LIEAVRATIRRLHYSPRTEEAYVHWIRQFIRFHHGKHPRQMGAEEVTAFLNDLAVARRTA 62

Query: 134 ----IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
                Q L ++  L++  +  +   +    ++ER +R        +++D           
Sbjct: 63  ASTQNQALCALLFLYRRVLDLQIPRL---EALERARRPEHLPTVLSRQDALTLLEHLIPP 119

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELP----DGFMK 243
              RL  E L  SGLR  ++    V+ +  +     ++  K        LP    D    
Sbjct: 120 F--RLIGELLYGSGLRLLEALSIRVKDVDLDRRQIMVRRGKGQHDRPALLPARARDELQA 177

Query: 244 LLAMTPIGKETFFINNDKQ----------------------------------------- 262
            L       +        +                                         
Sbjct: 178 QLDAVAQRHKKELAVGRGEVDLPHALRAKMPGAATSLAWQYIFPASRPCTDPATGRQVLY 237

Query: 263 KMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
            ++ +            AG+ K A  H +R   AT   +AG     +    G K V    
Sbjct: 238 HLHESAVQRAVHDAGRAAGLTKRATCHILRHSFATHLLEAGTDIRTIQTLLGHKDVRTTM 297

Query: 321 TYTKGADRIRLGI 333
            YT   DR  LG+
Sbjct: 298 IYTHIVDRGPLGV 310


>gi|149198037|ref|ZP_01875085.1| Integron integrase [Lentisphaera araneosa HTCC2155]
 gi|149138949|gb|EDM27354.1| Integron integrase [Lentisphaera araneosa HTCC2155]
          Length = 419

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 49/328 (14%), Positives = 101/328 (30%), Gaps = 56/328 (17%)

Query: 47  YMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS 106
           Y           +           L  LI++  +       +  +  ++ S+  + +   
Sbjct: 76  YWR-RKTDVSVPQARQVSGADDQALAELIAKLVEVMRLQRKSYKTEQAYCSWIQRYLVFV 134

Query: 107 GDFDYRKITTKHIRSGVESRKHTPSSA-IQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165
              +          S +   K+  SS   Q   ++   F++ + +E   ++  L   R  
Sbjct: 135 KGEELSGENVSRFVSHLAVEKNVASSTQNQAFNALVFFFRYVLEKEVGDLSQTL---RAI 191

Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FS 223
           RK++     T+E++ +  +       P L    +   GLR S++ R  V+ +       +
Sbjct: 192 RKSKLPLVLTREEVCKIMAKME--GVPLLMVRLIYGGGLRHSEAYRMRVKDVDMERMCLT 249

Query: 224 IKTQKTGTIITVELPDGFMKLLAM---------------------TPIGKETFFINN--- 259
           +K+ K      V L +  ++ L                        P   E  + N    
Sbjct: 250 VKSGKGDKDREVPLGESLVEELHEHLKKIREIYDEDRSNGVEGCYLPGALENKYPNAGKE 309

Query: 260 ---------------------DKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATI 296
                                 +  + ++  S  +K     AG+ K  + H +R   AT 
Sbjct: 310 WGWFWLFPANVLSNDPRANKIRRHHVLSSYLSGPYKQALRAAGIAKVATIHTLRHSFATH 369

Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324
             + G     L    G   V+  + YT 
Sbjct: 370 VLEDGYDIRTLQELMGHNDVNTTQIYTH 397


>gi|53712631|ref|YP_098623.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|52215496|dbj|BAD48089.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
          Length = 409

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 46/266 (17%), Positives = 88/266 (33%), Gaps = 35/266 (13%)

Query: 90  NSRISF---ESYFDQIIR---KSGDFDYRKITTKHIRSG----VESRKHTPSSAIQFLTS 139
            +   +     +  + I+      D   ++I+   I         + K   ++  +F+  
Sbjct: 129 ATYRKYEVTRRHLAEFIQSKYNVSDISIKEISPMFITDFELYLRTACKCGYNTTAKFMQF 188

Query: 140 MRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQQFKS---FWSEGSQPRLA 195
            + +   A     +  +P  S + R ++   G    T+++++               R  
Sbjct: 189 FKRIIIIARNNGILVGDPFASYKIRLEKVDRGY--LTEDEIKIILKKKMVSERLEHVRDL 246

Query: 196 FEFLLYSGLRCSDSCRAGVQHL-----QNNIFSIKTQKTGTIITVELPDG----FMKLLA 246
           F F  + GL  SD      +++      N     K QKT T + V L D       K   
Sbjct: 247 FVFSCFCGLAYSDVANLRQENIQKSFDGNLWIITKRQKTNTDVNVPLLDIPKMILKKYKG 306

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS-ADAGAT 303
             P GK    I+N K        + + K  A   G+ K  + H  R   AT +    G  
Sbjct: 307 KLPDGKILPVISNQK-------LNAYLKEIADICGIKKNLTFHLARHTFATTTTLSKGVP 359

Query: 304 AHELMATYGWKTVDQAETYTKGADRI 329
              +    G   ++  + Y +  +  
Sbjct: 360 IETVSKMLGHTNIETTQIYARITNSK 385


>gi|28465853|dbj|BAC57471.1| transposase B [Staphylococcus aureus]
          Length = 630

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 43/290 (14%), Positives = 82/290 (28%), Gaps = 35/290 (12%)

Query: 71  LKWLISEY----RKSAHWGSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSG 122
            K L+  Y         +  ++  ++   E +F+ +  K           ++  +   S 
Sbjct: 218 FKQLVKRYCKLRLNMDSFSYVSDIAQRLKE-FFNFLDIKFKHVQRVHQLTRVEIEAYLSE 276

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV----ERPKRKTEGIRPWTKED 178
           +      PS+    ++ +  LF    R E+    P   +    + PK      R   +  
Sbjct: 277 LNMMGIKPSTITGRISILEGLFSTLHRLEW-DDVPSKLLIYPEDYPKIPRAKPRFIDEFV 335

Query: 179 MQQFKSFWS-EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTI 232
           ++Q  S               +   G+R S+ C      L  +            K    
Sbjct: 336 LEQLNSHLDKLPEYIATMTMIVQECGMRISELCTLKKGCLLEDKDGDFFLKYYQWKMKKE 395

Query: 233 ITVELPDGFMKLLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NK 284
             V +      L+ +            E  F   D   +    F       A +  + +K
Sbjct: 396 HIVPISKEVALLIKVREDKVSEEFPDSEYLFPRKDGSPLKQETFRGELNKLAYEQNIVDK 455

Query: 285 S-------AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           S       AH  R    T   + G   H +    G ++ +    Y    D
Sbjct: 456 SGEIYRFHAHAFRHTVGTRMINNGMPQHIVQKFLGHESPEMTSRYAHIFD 505


>gi|85707316|ref|ZP_01038400.1| putative integrase/recombinase [Roseovarius sp. 217]
 gi|85668197|gb|EAQ23074.1| putative integrase/recombinase [Roseovarius sp. 217]
          Length = 335

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 41/285 (14%), Positives = 92/285 (32%), Gaps = 41/285 (14%)

Query: 88  AVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVE----SRKHTPSSAIQFLTS 139
           +     +F+  F    R+ G         ++    I + ++     R +  +S    L +
Sbjct: 27  SETYAHAFKLLFQFAARRVGSSPSQLSIEQLDAPLILAFLDHLETDRGNGATSRNARLAA 86

Query: 140 MRVLFKWAVRQEYVAINPC--------LSVERPKRKTEGIRPWTKEDMQQFKSFWSE--- 188
           ++   ++ V  +Y    P          ++   + + + ++  +K+++Q   +       
Sbjct: 87  IKSFMRF-VEYQY----PALLAQVAQIRAIPTKRCENKLVQHLSKDEVQAVLNAPDVTTR 141

Query: 189 -GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI---FSIKTQKTGTIITVELPDGFMKL 244
            G++ R         GLR S+   A +  L         ++ +                L
Sbjct: 142 LGARDRAMMHLCFAGGLRVSELVGAALTDLVLGQAPSLLVRGKGRKHRHFPLWKQTASDL 201

Query: 245 LAMTPIGKET----FFINNDKQKMNATQFSIWFKAKATKAGVNK--------SAHGVRKF 292
            A   +   T     F+N + + M  + F         KA  +         S H +R  
Sbjct: 202 RAWLAVRGLTPAPEIFVNAEGRAMTRSGFEYVLDKHVVKASQHCPSLAGRSVSPHQLRHS 261

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNS 336
            A I  +A     ++    G   +   ETY +  A +    ++  
Sbjct: 262 CAVIMLEATRDIRKVALWLGHADIRTTETYLRVDAAQKLEAVEAV 306


>gi|147675645|ref|YP_001218546.1| phage integrase family site specific recombinase [Vibrio cholerae
           O395]
 gi|262168003|ref|ZP_06035702.1| site-specific recombinase phage integrase family [Vibrio cholerae
           RC27]
 gi|146317528|gb|ABQ22067.1| site-specific recombinase, phage integrase family [Vibrio cholerae
           O395]
 gi|227012132|gb|ACP08342.1| site-specific recombinase, phage integrase family [Vibrio cholerae
           O395]
 gi|262023536|gb|EEY42238.1| site-specific recombinase phage integrase family [Vibrio cholerae
           RC27]
          Length = 411

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 54/350 (15%), Positives = 106/350 (30%), Gaps = 53/350 (15%)

Query: 19  GKIIYYFR---KGHGRRIRLPYPHESTFIPAYMSAL-------TGSTPK------REYIN 62
           G + + FR    G  +R+ L    + + + A   A         G  PK      R+   
Sbjct: 37  GNVRWQFRYKINGASKRVDLGDYPDLSLLKAREEAQKCREWLAEGHDPKLQRSVIRQETL 96

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122
            P      L++ + EY +S    +    S+         I    G     +  T H    
Sbjct: 97  KPVSVQDALEYWLVEYAESNRANADKHRSQFQK-----HIYPYIGALPLAQTETHHWIEC 151

Query: 123 VES--------RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV---ERPKRKTEGI 171
            +         ++  P +A   L + +   ++   + Y        +   +  K++ +  
Sbjct: 152 FDRVRKGIAGKQRPAPVAAGYVLQNAKQALRFCRVRRYATSRVLDDLTVNDVGKKQRKKD 211

Query: 172 RPWTKED-------MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
           R  T ++       +Q    F        L    +++ G R  +   +  +         
Sbjct: 212 RVLTAQELSDLWNAVQTPNKFLPYYCH--LVKFLVVF-GARTQEVRLSKWKEWDFEALIW 268

Query: 225 KT----QKTGTIITVELPDGFMKLLAMTP--IGKETFFINNDKQKMNATQFSI--WFKAK 276
                  KT   I   +PD  +  L        KET  +  +K     +Q     W +  
Sbjct: 269 TVPKEHSKTDEKIIRPIPDELVPWLLQLKEDSDKETLILGEEKSPETVSQQGRFFWQRLG 328

Query: 277 ATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
             +A    + H +R+  AT   + G   + +    G         Y +  
Sbjct: 329 HEEA---WTLHDIRRTLATRLNELGVAPYVVEQLLGHSLGGVMAIYNRSQ 375


>gi|303238111|ref|ZP_07324650.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
 gi|302481706|gb|EFL44762.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
          Length = 407

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 34/213 (15%), Positives = 73/213 (34%), Gaps = 22/213 (10%)

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK-RKTEGIRPWTKEDMQQFKSFWSEG 189
           ++  + L +++ +  +A  +  +  +P  + +        G    T+E++ +      + 
Sbjct: 182 NTTTKKLRNLKTVVNYARNRGLIMHDPFANHKLHYELVDRGY--LTEEEVLRIMKKHFDI 239

Query: 190 SQPRL---AFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDGFM 242
            +  L    F F  ++GL   D        +           K  KT     V L D  +
Sbjct: 240 ERLELVKNIFIFSCFTGLAYIDVYNLTYDKIVTVEDRQWLITKRYKTSVDENVMLLDIPL 299

Query: 243 KLLAMTPIGKETFFINNDKQK----MNATQFSIWFKAKATKAGVNK--SAHGVRKFSATI 296
            ++         + IN    K    M+  + + + K  A   G+ K  + H  R   AT+
Sbjct: 300 AIIRK------YYDINRKGGKVFPMMSNQRINSYLKEIADLCGIKKNLTFHMARHTFATM 353

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           S   G     +    G   +   + Y +  ++ 
Sbjct: 354 SISKGVPMESVSKMLGHTNIRITQIYARITNKK 386


>gi|254449460|ref|ZP_05062897.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198263866|gb|EDY88136.1| phage integrase [Octadecabacter antarcticus 238]
          Length = 369

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 52/326 (15%), Positives = 106/326 (32%), Gaps = 41/326 (12%)

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121
              R+   T+  L S++    H   L  + +         +++  G      +  + +  
Sbjct: 32  KKTRRIEPTVADLASDWL-DVHASGLK-SEQAIRSLIGGDLVKAIGRMKVTDVRRRDVIE 89

Query: 122 GVESRKHT-PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG---------- 170
            VE++  T P  A   L+  R+L  +A  ++ V  NP   ++    K  G          
Sbjct: 90  AVEAKATTAPRQAALMLSYARMLLDYATDRDIVRANPVAGLKPASIKVAGKRDPLKPVVR 149

Query: 171 IRPWTKEDMQQF---KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI--- 224
           +R    E+++                LA + +L +G R  +        +   +++I   
Sbjct: 150 LRVLDAEEIKSMWVNVESCGLHLLTGLALKLVLVTGQRPGEVAGMHENEISGRLWTIPAS 209

Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIG------------KETFFINNDKQKMNATQFSIW 272
           +  KT T  TV L D  + ++ +                    F       +  +     
Sbjct: 210 RRGKTSTTQTVYLTDTALNIITVAKAELERLQGRRKGALSGYIFEAKGGSSITNSALPRG 269

Query: 273 FKAKATKAGV-------NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY--- 322
            +      GV       + + H +R+   T  +      H    T G        TY   
Sbjct: 270 VQRSHEALGVKDNETWGHWTPHDLRRTMRTGLSACKIAPHIAELTIGHTKRGIVATYDQH 329

Query: 323 TKGADRIRLGIKNSRRISSVVDSDDP 348
           T  ++R    +    R+ ++V  ++P
Sbjct: 330 TFDSERRDAMMAWELRLMTIVAGNNP 355


>gi|45289499|gb|AAS57783.1| Sb28 [Salmonella enterica subsp. enterica serovar Typhimurium]
          Length = 168

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 58/121 (47%), Gaps = 2/121 (1%)

Query: 59  EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH 118
           E     RK   T   L  ++  SA +  LA  ++  + ++   I+   GD + + I  +H
Sbjct: 49  EKKVEGRKNRITFTQLWRKFLASADYADLAPRTQKDYLAHEKYILAVFGDAEAKAIKPEH 108

Query: 119 IRSGVESRKHTPS-SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
           IR  +++R       A    +SM  +F+W+ ++ YV  NPC+ V++   K +  R  T E
Sbjct: 109 IRRYMDARGQKSRVQANHEHSSMSRVFRWSYQRGYVPGNPCVGVDKFP-KPQRDRYITDE 167

Query: 178 D 178
           +
Sbjct: 168 E 168


>gi|257417023|ref|ZP_05594017.1| phage integrase [Enterococcus faecalis AR01/DG]
 gi|257158851|gb|EEU88811.1| phage integrase [Enterococcus faecalis ARO1/DG]
          Length = 393

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 53/324 (16%), Positives = 104/324 (32%), Gaps = 60/324 (18%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132
           WL  EY+K+    +     R   +     I+   G     ++T K ++  V         
Sbjct: 77  WL-DEYKKTVRESTFIATERRMKK----HILPTFGKMRLERLTVKIVQKSVNEWYKKNEM 131

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR-----KTEGIRPWTKEDMQQFKSFWS 187
               L+    +  +AV  E +  NP   + +P       K    + +TK++++ F +   
Sbjct: 132 GKVLLSYASRVCDYAVGLEIIDSNPFKKITKPSSLKKLEKNTKRKFYTKDELEHFLNTAD 191

Query: 188 EGSQPR---------------LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
             +                    F  L ++G+R  ++       +      +   KT  I
Sbjct: 192 SIANQAKEESLVLKYYADLDCAIFRLLSFTGIRVGEALALNWNDIDLKKQVVNINKTTAI 251

Query: 233 IT--VELPDG-----------------------FMKLLAMTPIGK---ETFFINNDKQKM 264
            T  + + D                          +  A+   G    +  F   D    
Sbjct: 252 STNGLTINDPKTPNSIRKISFDNKTAYILKKWKLRQHEALMKKGGFKTQLIFTKIDGTMF 311

Query: 265 NATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADA-GATAHELMATYGWKTVDQA-E 320
            +       K  A KA ++ S   HG R   AT+  ++    +  +    G  ++    +
Sbjct: 312 RSQDIYQRSKRLAEKANLH-SIGCHGFRHTHATLLFESDNVRSKIIQERLGHSSLQITMD 370

Query: 321 TYTKGADRIRLGIKNSRRISSVVD 344
           TYT  +D   +  + +   SS V+
Sbjct: 371 TYTHISD--EVTKEATDAFSSYVN 392


>gi|302525185|ref|ZP_07277527.1| tyrosine recombinase XerC [Streptomyces sp. AA4]
 gi|302434080|gb|EFL05896.1| tyrosine recombinase XerC [Streptomyces sp. AA4]
          Length = 307

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 40/253 (15%), Positives = 75/253 (29%), Gaps = 24/253 (9%)

Query: 100 DQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL 159
           D+  R+  D D  ++  +   +G  S     ++  +   + R    WA R   +  +P  
Sbjct: 47  DRPARRFEDLDVTQL--RAWLAGQRSDGAGRTTLARRAAAARTFTAWAHRTGLLKSDPGG 104

Query: 160 SVERPKRKTEGIRPWTKEDMQQF--------KSFWSEGSQPRLAFEFLLYSGLRCSDSCR 211
            +  P+           E                     + R   E L  +G+R S+ C 
Sbjct: 105 RLAAPRTHRTLPGVLRAEQADALMDASAKGAAERDPVALRDRALVELLYATGIRVSELCG 164

Query: 212 AGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE----------TFFINND 260
             V  +  +        K     TV       + L                    F+   
Sbjct: 165 LDVASVDFSRRVLSVVGKGDKERTVPFGVPAAEALTAWLEDGRPALAGETPPKALFLGVR 224

Query: 261 KQKMNATQFSIWFKAK--ATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
            ++++             A     +   HG+R  +AT   + GA    +    G  T+  
Sbjct: 225 GKRLDPRAARRVVHEAVAAVPGAADMGPHGLRHSAATHLLEGGADLRSVQELLGHATLAT 284

Query: 319 AETYTK-GADRIR 330
            + YT    DR++
Sbjct: 285 TQLYTHVTVDRLK 297


>gi|241889571|ref|ZP_04776869.1| integrase [Gemella haemolysans ATCC 10379]
 gi|241863193|gb|EER67577.1| integrase [Gemella haemolysans ATCC 10379]
          Length = 355

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 33/270 (12%), Positives = 90/270 (33%), Gaps = 26/270 (9%)

Query: 74  LISEYRKSAHWG----SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK-- 127
           L +++ KS  +      +   + +++E     I R     + R +    ++  ++     
Sbjct: 65  LYTDFYKSWIFSVKKNDVREATLVNYERTITIIDRLFEGIELRHLNDTVMQKKIDEYALT 124

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQQFKSFW 186
           H+  +  + +  +R   K+A  +  +  +    ++ R K   +     + ++M + + + 
Sbjct: 125 HSKKTTKELVLKIRGSLKYAYARGLLVNDFGSLLKVRGKELPKRNISLSIKEMAKLRKYC 184

Query: 187 SEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ----------KTG-TII 233
            E       +     L +G R  +      + +      I+            K   +  
Sbjct: 185 LEHKHIEFNVLVLLALETGARRGELLGLKCEDIYEFGIKIRRSISPTSKDTSLKNKFSKR 244

Query: 234 TVELP-DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKF 292
            + +  D +  L+ ++   K+  F  N+   M +       K          + HG+R  
Sbjct: 245 DISINKDIYDALVELSKSKKDYIFCRNN--FMQSRYLQELLKKLEIT---KTTFHGLRDS 299

Query: 293 SATISADAGATAHELMATYGWKTVDQAETY 322
            A+       +   +    G  ++   + Y
Sbjct: 300 HASFLFTKNISLDYISRRLGHNSILTTQEY 329


>gi|237722535|ref|ZP_04553016.1| transposase [Bacteroides sp. 2_2_4]
 gi|229448345|gb|EEO54136.1| transposase [Bacteroides sp. 2_2_4]
          Length = 412

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 48/266 (18%), Positives = 90/266 (33%), Gaps = 35/266 (13%)

Query: 90  NSRISF---ESYFDQIIR---KSGDFDYRKITTKHIRSGVESRKHT----PSSAIQFLTS 139
            +   +     +  + I+      D   ++IT   I       + T     ++  +F+  
Sbjct: 131 ATYRKYEVTRRHLAEFIQSKYNLSDISIKEITPMFITDFELYLRTTCKCGFNTTAKFMQF 190

Query: 140 MRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQQFKSFWSEGSQ---PRLA 195
            + +   A     +  +P  S + R ++   G    T+++++          +    R  
Sbjct: 191 FKRIILIARNNGILIGDPFASYKIRLEKVDRGY--LTEDEIKIILKKKMVSERLEQVRDV 248

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQ-----NNIFSIKTQKTGTIITVELPDG----FMKLLA 246
           F F  +SGL   D       +++     N     K QKT T + V L D       K   
Sbjct: 249 FIFSCFSGLAYVDVANLKEDNIRKSFDGNLWIITKRQKTNTDVNVPLLDIPKMILEKYKG 308

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA-GAT 303
             P GK    I+N K        + + K  A   G+ K  + H  R   AT +  A G  
Sbjct: 309 KLPDGKVLPIISNQK-------LNAYLKEIADVCGIKKNLTFHLARHTFATTTTLAKGVP 361

Query: 304 AHELMATYGWKTVDQAETYTKGADRI 329
              +    G   ++  + Y +  +  
Sbjct: 362 IETVSKMLGHTNIETTQIYARITNNK 387


>gi|315035524|gb|EFT47456.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0027]
          Length = 389

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 42/299 (14%), Positives = 90/299 (30%), Gaps = 46/299 (15%)

Query: 85  GSLAVNSRISFESYF-DQIIRKS--GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS-- 139
             +A N+ + ++ Y  ++I +          ++   H++   +   +   +A   +    
Sbjct: 86  KQVAFNTYVGYKHYVHNRIYKFFYPKKIKLNRLKPYHLQDFYQYMLNDDCTANTVIHYHA 145

Query: 140 -MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEF 198
            +    + AV  E ++ N    V +PK+K    + + + ++ +     SE  +  L    
Sbjct: 146 FISKALQEAVITELISTNVADKVRKPKKKQFVSQVYNQHEILKLLDILSE-EKLYLVVLL 204

Query: 199 LLYSGLRCSDSCRAGVQHLQ-------------------NNIFSIKTQKTGTI-ITVELP 238
             + GLR S+        +                    + +      K  +   T+ L 
Sbjct: 205 TAFYGLRRSEVLGLKWSAIDFLNKKIMINHVIIENPENMSQLIKKDQTKNSSSYRTLPLV 264

Query: 239 DGFMKLLAMTPI----------------GKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
           +   + L                       E  F   D + M     +        K G+
Sbjct: 265 ETIERALVNQAKWQQDNRILLGEDYILKDSEYVFTMEDGRLMKPQYVTHRLSKLIKKNGL 324

Query: 283 NK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTK-GADRIRLGIKNSRR 338
            K   H +R  +A+I  D+G     +    G  +       YT   A       +    
Sbjct: 325 KKIRFHDLRHSNASIMLDSGQNMKSIQEWLGHASYSTTANLYTHLTAGVKERAAEALEN 383


>gi|297539365|ref|YP_003675134.1| integrase family protein [Methylotenera sp. 301]
 gi|297258712|gb|ADI30557.1| integrase family protein [Methylotenera sp. 301]
          Length = 520

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 44/298 (14%), Positives = 91/298 (30%), Gaps = 50/298 (16%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH---IRSGVESRK 127
           L  L+S++   A     A  +        ++     G     +I   H    + G+    
Sbjct: 197 LSKLVSKW---AAEREPAARTVAKMNRVIERFEAIVGKLTIPEIKRVHAVAFKDGLLEAG 253

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR--PWTKEDMQQFKS- 184
            T ++  Q+LT +  L  +A +Q  +  NP   ++    ++  ++  P+    ++   + 
Sbjct: 254 LTAANTNQYLTELNTLLNYATQQAIIETNPATGIKIRISESARVKRSPFDDSALKAIFNS 313

Query: 185 ------FWSEGSQPRLAF---EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------ 229
                     G +   A+      LY+G R  + C+  +  +Q   +  + + T      
Sbjct: 314 PIYTSDERPAGGKGEAAYWLPLLALYTGARLDELCQLHLGDIQLESYEDEQENTHQVWVM 373

Query: 230 --------------GTIITVELPDGFMKL-----------LAMTPIGKETFFINNDKQKM 264
                         G+   + +    + L           L + P  K      +     
Sbjct: 374 RITDEGDGQKLKNSGSRRRIPIHQTLIALGFITYVQAQSGLQIFPELKPASAYGSLSGNW 433

Query: 265 NATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           +   F  + + K          H  R      +  AG       A  G  + D A  Y
Sbjct: 434 S-KWFGKYLREKIKVTDTKMVFHSFRHNFKDYARIAGIATEVHNALSGHSSSDAATNY 490


>gi|186686693|ref|YP_001869887.1| phage integrase family protein [Nostoc punctiforme PCC 73102]
 gi|186469578|gb|ACC85376.1| phage integrase family protein [Nostoc punctiforme PCC 73102]
          Length = 297

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 47/299 (15%), Positives = 92/299 (30%), Gaps = 31/299 (10%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           TL  L +++ +      LA ++  S++S    ++++ G +    I  + +   +      
Sbjct: 3   TLAALATKFLERP---GLAKSTLRSYQSTIIPLLKEYGRWSIEIIDRQVLMEYLNHLTDV 59

Query: 130 PSSAIQFLTS-MRVLFKWAVRQEYVAINPCLSVERPKRKT--------EGIRPWTKEDMQ 180
             +      + +  LF +AV  EY+  NP   + R K           E +R  T   + 
Sbjct: 60  SYTTHHRHQAVITALFSFAVDMEYLKSNPVAGLRRRKPSREQGEHATDEAVRYLTPYQLS 119

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT------ 234
                  +  +       L  SG R ++     +  +       +    G          
Sbjct: 120 ILYRVIKKDVRLSALVRLLHTSGARIAEVLALNLDEIDLKARKFQVVGKGNKQRWCFYSE 179

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA-------H 287
           V L      +           F     + +  ++ S     K+    +  S        H
Sbjct: 180 VALNSLNHYIEYYRHPKHPALFTAQQPKTLEVSRLSYRMAHKSWIKLIRDSPELQEIRIH 239

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI-----RLGIKNSRRISS 341
            +R   AT          EL A  G +++     Y K   +      +L +KN    S 
Sbjct: 240 DLRHTFATE-RVGLMGIEELRALMGHESIQTTLRYQKVTSQRAEIVAQLALKNLPNFSE 297


>gi|254779339|ref|YP_003057444.1| putative integrase/recombinase [Helicobacter pylori B38]
 gi|254001250|emb|CAX29225.1| Putative integrase/recombinase [Helicobacter pylori B38]
          Length = 356

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 26/174 (14%), Positives = 64/174 (36%), Gaps = 15/174 (8%)

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIIT 234
           E + + +      ++ RL  + ++++G+R +++ +  ++    +N  ++I  +  G    
Sbjct: 179 ESIDKIEMSAKVRARNRLLIKIIVFTGMRSNEALQLKIKDFTLENGCYTILIKGKGDKYR 238

Query: 235 VELPDG------FMKLL---AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284
             +           + L    + P+  +  F N     +         +     AG+ + 
Sbjct: 239 AVMLKAFHIESLLKEWLIERELYPVKNDLLFCNQKGSALTQAYLYKQVERIINFAGLRRE 298

Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
              AH +R   AT+          +    G  +++ +  YT   D+ RL    S
Sbjct: 299 KNGAHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTH-FDKERLKEAAS 351


>gi|217032477|ref|ZP_03437969.1| hypothetical protein HPB128_156g7 [Helicobacter pylori B128]
 gi|298736373|ref|YP_003728899.1| XerCD family integrase/recombinase [Helicobacter pylori B8]
 gi|216945823|gb|EEC24444.1| hypothetical protein HPB128_156g7 [Helicobacter pylori B128]
 gi|298355563|emb|CBI66435.1| integrase-recombinase protein (XerCD family) [Helicobacter pylori
           B8]
          Length = 355

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 26/174 (14%), Positives = 64/174 (36%), Gaps = 15/174 (8%)

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIIT 234
           E + + +      ++ RL  + ++++G+R +++ +  ++    +N  ++I  +  G    
Sbjct: 178 ESIDKIEMSAKVRARNRLLIKIIVFTGMRSNEALQLKIKDFTLENGCYTILIKGKGDKYR 237

Query: 235 VELPDG------FMKLL---AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284
             +           + L    + P+  +  F N     +         +     AG+ + 
Sbjct: 238 AVMLKAFHIESLLKEWLIERELYPVKNDLLFCNQKGSALTQAYLYKQVERIINFAGLRRE 297

Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
              AH +R   AT+          +    G  +++ +  YT   D+ RL    S
Sbjct: 298 KNGAHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTH-FDKERLKEAAS 350


>gi|228912351|ref|ZP_04076045.1| Phage integrase [Bacillus thuringiensis IBL 200]
 gi|228847299|gb|EEM92259.1| Phage integrase [Bacillus thuringiensis IBL 200]
          Length = 319

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 37/277 (13%), Positives = 81/277 (29%), Gaps = 31/277 (11%)

Query: 85  GSLAVNSRISF----ESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSM 140
              +  ++  +      +   I    G           I     S+K+  ++  +  T +
Sbjct: 31  KKRSERTKQQYLHDLSHFLRYIKETIGTIQELSHNEMEIYFYELSKKYAATTLRKKKTVV 90

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEG--IRPWTKEDMQQFKSFWSEGSQ-PRLAFE 197
           +   K+      ++ N    +++   K E    R    E++ Q      + +      F 
Sbjct: 91  QQFLKYVYDNNGLSDNFSSRLKKVSVKKEELVNRDLYPEEVTQILDELKKSNYFIYATFF 150

Query: 198 FLLYSGLRCSDSCRAGVQHL------QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251
            L  +GLR  +   A    L         +  +  +   +       D    +  +  + 
Sbjct: 151 LLSTTGLRIEEIATAKWADLVFHSSLNAYLLRVVGKGNKSREVRIFKDTLDAICHVRSLR 210

Query: 252 KET----------FFINNDKQKMNATQFSIWFKAKATKAGVN--------KSAHGVRKFS 293
           K+T          F    D     A   S     K  +  ++         + H  R F 
Sbjct: 211 KQTTELDASSTSAFLPKADGTNYRADYLSSVVAKKIEEINLDFLRYRQDRITPHTCRHFM 270

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
           A    + G    ++    G +++   E Y +   R +
Sbjct: 271 ANYLMEKGVELKKIRDYLGHESIMTTERYLRERTRRQ 307


>gi|116051793|ref|YP_789365.1| putative integrase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115587014|gb|ABJ13029.1| putative integrase [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 400

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 44/305 (14%), Positives = 101/305 (33%), Gaps = 26/305 (8%)

Query: 49  SALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSG 107
           +A      ++    +  K   T      ++ +      +A ++R    S +++ +  K  
Sbjct: 77  AAGKSPAKEKARDKARVKDAETFGAWAEKWLRGYQ---MADSTRDMRRSIYERELKPKFS 133

Query: 108 DFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165
           +    +IT + +R+  ++   +  P++A+     M  +F+WA+ +     NP   V    
Sbjct: 134 NQKLVEITHEDLRALTDAIVERGAPATAVHAREVMLQVFRWAIERGQKVENPAELVRPTT 193

Query: 166 RKT--EGIRPWTKEDMQQFKSFWS-EGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQNN 220
                   R  T ++++    +    G+ P  R A + LL + +R S+   A    +  +
Sbjct: 194 IAKFEPRDRALTPDEIRLMYQYMERIGTTPSIRAAAKLLLLTMVRKSELTNATWSEINFS 253

Query: 221 IFSIK----TQKTGTIITVELPDGFMKLLAMTPI---GKETFFINNDKQ--KMNATQFSI 271
                      K      V L    + +         G +    +       M++   + 
Sbjct: 254 EALWTIPKERMKRRNPHLVFLSRQALDIFIALKTFAGGSDYVLPSRYDSDLPMSSATLNQ 313

Query: 272 WFKAKATKAGVNKS------AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
                   A            H +R+ ++T+  +AG     +      +       Y K 
Sbjct: 314 VLTLTYRLAQKEGKSLAKFGPHDLRRTASTLLHEAGYNTDWIEKCLAHEQRGVRAVYNKA 373

Query: 326 ADRIR 330
             R +
Sbjct: 374 EYREQ 378


>gi|325963595|ref|YP_004241501.1| site-specific recombinase XerD [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323469682|gb|ADX73367.1| site-specific recombinase XerD [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 371

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 26/176 (14%), Positives = 49/176 (27%), Gaps = 13/176 (7%)

Query: 163 RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222
           R +         ++ +  +    +    + +     +LY GLR ++     V  +     
Sbjct: 178 RLREPRRLPVALSQGEAAKLLGSFKS-WRDQSIAGLMLYCGLRSAEVLGLDVTDVDIGGG 236

Query: 223 SIKTQKTGTI-ITVELPDGFMKLLA------MTPIGKETFFI----NNDKQKMNATQFSI 271
            ++          V L      ++                F+     +  Q +       
Sbjct: 237 WLRVMGKDQRERRVPLDVDLGSVIQVYLLTERPESDSPRLFLVAKGAHRGQPLTPAGLRT 296

Query: 272 WFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            F+      GV     H +R    T  A+AG     + A  G   VD    Y   A
Sbjct: 297 IFRYHRALTGVAAGHPHTLRHTFGTALAEAGVDLAVMQALLGHAHVDTTARYIHLA 352


>gi|313667356|ref|YP_004049757.1| integrase family protein [Oceanithermus profundus DSM 14977]
 gi|313153987|gb|ADR37837.1| integrase family protein [Oceanithermus profundus DSM 14977]
          Length = 345

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 48/249 (19%), Positives = 87/249 (34%), Gaps = 26/249 (10%)

Query: 108 DFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK-- 165
           D     +  +           +PS+A  +L+ +R  ++  V    VA NP   V  P+  
Sbjct: 88  DRWLADLLDRGGHLSENPWPLSPSTAAAYLSGLRAFYRALVWAGAVAKNPAAEVRAPRDP 147

Query: 166 -----RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220
                R+     P     ++      ++  + R     +  +GLR ++     V+ +   
Sbjct: 148 TPRSERRPALPYPLYIRLLEHLSGDEAQQVRDRAVIRLMGDAGLRIAEVEALDVKDVDLG 207

Query: 221 --IFSIKTQKTGTIITVELPDGFMKLL--------AMTPIGKETFFINNDKQK-----MN 265
             +  ++  K G   TV +       L        A    G+E  F+N   +K     + 
Sbjct: 208 EHVVVVRAGKGGKQRTVPMTRALSSALVEWLGVRRAYAAPGEEALFVNLGGRKAKGRRLR 267

Query: 266 ATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           A     + +    + G     + AH +R  + T    A    H + A  G + V  +  Y
Sbjct: 268 AHSIRRFLEGYYRELGFPERYRGAHTLRHLAGTRFYQASRDIHVVAALLGHENVGTSTVY 327

Query: 323 TKGADRIRL 331
            K  DR RL
Sbjct: 328 AKM-DRSRL 335


>gi|301307882|ref|ZP_07213838.1| integrase [Bacteroides sp. 20_3]
 gi|300834225|gb|EFK64839.1| integrase [Bacteroides sp. 20_3]
          Length = 407

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 52/289 (17%), Positives = 92/289 (31%), Gaps = 39/289 (13%)

Query: 86  SLAVNSRISFESYFDQIIR------KSGDFDYRKITTKHIRSG----VESRKHTPSSAIQ 135
           +  V S  ++ + +  I R      K  D  +  +    I          R   P + I 
Sbjct: 127 NRTVGSLRAYSNAYSHIERFLQAQYKLSDIPFSALDRSFIDKYDLYLRTERNLAPGTIIN 186

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS---QP 192
               ++ +   A+    +  +P +  E P R     +  T E++ +  +           
Sbjct: 187 LTVQLKTIVGEAIADGIITASPFMGYE-PVRPKHVQKYLTAEELHRIMTTPLHRQTLYHV 245

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHL---QNNIFSIK--TQKTGTIITVELPDG----FMK 243
           R  F F  ++G+   D       +L   ++ I+ IK   QKT     + L D       K
Sbjct: 246 RDMFLFSCFTGIPYGDMRLLTKDNLCLAEDGIWWIKSARQKTKIEFEIPLLDLPLQILKK 305

Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATIS-ADA 300
                P  K              +  +++ K  A    +++    H  R   AT      
Sbjct: 306 YSGTAPGDKLLPM-------YCNSTLNLYLKEIARICHIDRPLVFHAGRHTYATEITLSH 358

Query: 301 GATAHELMATYGWKTVDQAETYTK------GADRIRLGIKNSRRISSVV 343
           G     +    G   ++  + Y K       AD   L  K S R S V+
Sbjct: 359 GVPLETVSRMLGHSQIETTQIYAKVTDEKIDADTKALNRKISERFSVVI 407


>gi|226951339|ref|ZP_03821803.1| integrase/recombinase protein [Acinetobacter sp. ATCC 27244]
 gi|226837861|gb|EEH70244.1| integrase/recombinase protein [Acinetobacter sp. ATCC 27244]
          Length = 340

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 44/325 (13%), Positives = 96/325 (29%), Gaps = 24/325 (7%)

Query: 12  TKERTRHGKIIYYFRKGHGRRIRLPYP-HESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
            K   R        R  + R         E     A +  L             +K   +
Sbjct: 2   QKPVKRGNAWRIQVRYKNLRDSVTRDTARECEQWAA-IRLLEMKAEYDPKKTQMQKPYFS 60

Query: 71  LKWLISEYRKSAHWGSLAVN--SRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-- 126
              L  +Y     +     +   +      F     +  +    +I    ++   + R  
Sbjct: 61  FFVLCQKYYDEVGYKKRGKSFIKQQIKRETFKNYFGELAEKSIYEIKPIDVKKWRDKRLE 120

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           K  P +  + +     +F +A  +   +  NP   V +P +     R  +  +++     
Sbjct: 121 KVAPGTVHRQMCLYTSVFNYAKNELFLIEDNPFAQVTKPTKPPARNRLISHSEIEIILKA 180

Query: 186 --WSEGSQPRLA-------FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
             +  G++P+         F F + + +R  +       ++  +   +   K G    V 
Sbjct: 181 LNYKIGTRPQTPRQYVAWTFLFAIETAMRKGEILGITCNNIYPDYIHLPITKNGDARDVP 240

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSA 294
           L      LL + P       I       N+  F + ++    K  ++     H  R  + 
Sbjct: 241 LSKEARDLLILIPYMDRVKLI-----PHNSNSFRLIWQRAIGKTELHNVVHFHDTRHEAI 295

Query: 295 TISADAGATAHELMA-TYGWKTVDQ 318
           T   +      E++A   G + +  
Sbjct: 296 TRFVNKRKLPVEILAKVTGHRDIKT 320


>gi|170730246|ref|YP_001775679.1| phage integrase [Xylella fastidiosa M12]
 gi|167965039|gb|ACA12049.1| phage integrase [Xylella fastidiosa M12]
          Length = 276

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 40/254 (15%), Positives = 86/254 (33%), Gaps = 15/254 (5%)

Query: 82  AHWGSLAVNSRISFE----SYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--TPSSAIQ 135
           A    L+  SR +      +    +           I +  I      +    +PS+A +
Sbjct: 9   AALRWLSEKSRKATAHEDAAKLRWLASYFAGKKLAAIDSDLILRVATLKAAETSPSTANR 68

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195
           +L  +R + + A    ++ I+ C  +      T+ +R  T    +   S        R  
Sbjct: 69  YLALIRSILRRAFDI-WLWIDRCPHISLFPEPTKRVRWLTSVQARSLLSELPL--HQRAM 125

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIITVELPDGFMKLLAMTPIG 251
             F L +GLR ++  +     +      ++      K    I + L    +++L     G
Sbjct: 126 VIFALSTGLRQANVLKLRWDQVDLVRKVLRIPADQAKGRQAIRIPLSLHALQVLQAQ-RG 184

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMAT 310
           +   ++     +      +  +     +AG+ +   H +R   A+  A +G   + L   
Sbjct: 185 QHYEWVFTYCGRSIRWVNTRAWHQALQRAGIQDFRWHDLRHTWASWHAQSGTPLYVLQDL 244

Query: 311 YGWKTVDQAETYTK 324
            GW++      Y  
Sbjct: 245 GGWQSESMVRRYAH 258


>gi|156978028|ref|YP_001448934.1| integrase [Vibrio harveyi ATCC BAA-1116]
 gi|156529622|gb|ABU74707.1| hypothetical protein VIBHAR_06825 [Vibrio harveyi ATCC BAA-1116]
          Length = 386

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 48/318 (15%), Positives = 100/318 (31%), Gaps = 34/318 (10%)

Query: 41  STFIPAYMSALTGSTPKREYINSPRKKPTTLKW-LISEYRKSAHWGSLAVNSRISFESYF 99
             F       ++   P     +SP+K  + +    + ++ +S    S+   +        
Sbjct: 50  EQFNQKTQGDISAQIPTLTNCSSPQKHSSEVDTETLEDFIQSKSVESVTALTLKQLRQRC 109

Query: 100 DQIIRKSGDFDYRKITTK---HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAIN 156
              +         K+T+K     R  + SR  +  +   ++ +++    W V QE +  N
Sbjct: 110 RDFLLFVEKQPASKMTSKLAMAYRDELLSRDLSLKTIKDYIAAIKQFLSWCVVQELLEHN 169

Query: 157 PCLSVE---RPKRKTEGIRPWTKEDMQQFK--SFWSEGSQPRLAFEF-LLYSGLRCSDSC 210
           P  +V+   +P   +     W  +++++      + E SQ        + Y G R S++C
Sbjct: 170 PFSNVKLPSKPASSSSQRPRWGMQELKRLFGSQIFKEQSQSFHWATLVMFYQGCRPSEAC 229

Query: 211 RAGVQHLQNN----IFSIKTQKTGTIIT-------VELPDGFMK-----LLAMTPIGKET 254
           +  V+++  +                +        V +    M       +      ++T
Sbjct: 230 QLKVKNIHLDEDIPFIHFDDSGEQQHLKNAASNRCVPIHQALMDKEFLNYVRERQEQRQT 289

Query: 255 ----FFINNDKQKMNATQFSIW--FKAKAT-KAGVNKSAHGVRKFSATISADAGATAHEL 307
               +    D    +     I           AG   +A+  R         AG   H +
Sbjct: 290 QLFDYIPRGDDLDWSKDYRDIMGDILDACGFVAGNRATAYSFRHTFIDELKQAGVAEHVV 349

Query: 308 MATYGWKTVDQA-ETYTK 324
               G KT       Y K
Sbjct: 350 AQIVGHKTHSLTYGHYGK 367


>gi|229824140|ref|ZP_04450209.1| hypothetical protein GCWU000282_01444 [Catonella morbi ATCC 51271]
 gi|229786494|gb|EEP22608.1| hypothetical protein GCWU000282_01444 [Catonella morbi ATCC 51271]
          Length = 373

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 54/370 (14%), Positives = 115/370 (31%), Gaps = 54/370 (14%)

Query: 18  HGKIIY--YFRKGHGRRIR-LPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           +GK  Y   F+  H  +++ +          A MS             +      +   L
Sbjct: 8   NGKYRYCERFKNPHTGKVKKISLVSSKKNDKANMSVKLYEAYTATLGATSASSEVSFGEL 67

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS--GVESRKHTPSS 132
           + E+  S +  ++  ++ I+  +  D I    G F   K+    +       S+   P S
Sbjct: 68  VDEWF-SVYVQTVRKSTAINRRNVVDHIKSDLGHFLASKVDDIMMNQHLLRLSKSGRPYS 126

Query: 133 -AIQFLTSMRVLFKWAVRQEYVAIN-----PCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
              +    ++ + K+ V+  Y   +         +  PK  T   +    ++++      
Sbjct: 127 YTNKRREVLKHIIKFGVKYGYYDNDFSEKLVVERINMPKENT--YKYLEHDEIKSLVQQL 184

Query: 187 SEGSQPRLAFEFL--LYSGLRCSDSCRA-----------------GVQHLQNNIFSIKTQ 227
            E  +P +A   +  + +G+R  ++                       H+ N+       
Sbjct: 185 EEMGKPEVANLSMFQMLTGVRIGEAVAIDYEQDIDLTSRTITINKSWSHMVNDFG---PT 241

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKET--------------FFINNDKQKMNATQFSIWF 273
           KTG    + + D  + L+    +  +T               F     +  +  QF    
Sbjct: 242 KTGKDRVIHINDDTIALIKKQILISKTKKLRYKSISPDNTLLFTTRTGKPYSLLQF-NRE 300

Query: 274 KAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLG 332
            +K    G   + H  R    T++ + G   H +    G       E  Y   +   +L 
Sbjct: 301 LSKVNIPGKRVTTHYFRHTFVTLAIEHGIPLHLIAHHVGHTDTKMIEKIYAHHSQ--KLD 358

Query: 333 IKNSRRISSV 342
               + I  +
Sbjct: 359 DSLRQSIERM 368


>gi|167855779|ref|ZP_02478533.1| putative integrase [Haemophilus parasuis 29755]
 gi|167853119|gb|EDS24379.1| putative integrase [Haemophilus parasuis 29755]
          Length = 332

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 41/267 (15%), Positives = 93/267 (34%), Gaps = 23/267 (8%)

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVESR 126
             T   LI +Y        +            ++I +   G  +   +  +H       R
Sbjct: 53  KMTFAELIDKYVAEVT---VNKGGAREESLRLNRIAKTPLGRVELEDLNKEHFEKWQNKR 109

Query: 127 --KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF-- 182
             + +  S ++   S+  +   A++ E++  NP   V++PK      R ++++++ +   
Sbjct: 110 LTEVSVLSVLRERVSLSAVVSQAIKWEFLKSNPLSLVDKPKEPPPRTRRYSQDEIDRLLF 169

Query: 183 -------KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS--IKTQKTGTII 233
                  K   +  S+   +  F + + +R  + C    + +  N  +  +   K G   
Sbjct: 170 VSGFDFDKQPETMISRVGASILFAIETAMRVGEICNLKWEDVDFNKSTAFLPKTKNGFAR 229

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVR 290
           TV L    +K+L      K     N    ++ ++     F+     AG+   +   H  R
Sbjct: 230 TVPLSSTAIKILRHLEKVKSE--CNQTVFQVKSSSHDAIFRKMKELAGLADQDLHFHDTR 287

Query: 291 KFSATISADAGATAHELMATYGWKTVD 317
           + + +  A        L    G + + 
Sbjct: 288 REALSRLAKK-VDVMTLAKISGHRDIK 313


>gi|182684244|ref|YP_001835991.1| site-specific recombinase [Streptococcus pneumoniae CGSP14]
 gi|221232023|ref|YP_002511175.1| integrase [Streptococcus pneumoniae ATCC 700669]
 gi|182629578|gb|ACB90526.1| site-specific recombinase [Streptococcus pneumoniae CGSP14]
 gi|220674483|emb|CAR69044.1| integrase [Streptococcus pneumoniae ATCC 700669]
          Length = 395

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 57/364 (15%), Positives = 115/364 (31%), Gaps = 50/364 (13%)

Query: 6   RLPPFVTKERTRHGKIIYYFRKG-----------HGRRIRLPYPHESTFIPAYMSALTGS 54
           +   +    +   GKI +    G            GR+ +   P  S F  AY   L   
Sbjct: 5   KTKKYKGVYKDSKGKIYFQIELGVDPITGKRIQKKGRKNQQGLPFNS-FKEAYEEIL--- 60

Query: 55  TPKREYINSPRKKP-TTLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYR 112
             K E++NS       T +  + E Y K        V  + +   +    I++ G     
Sbjct: 61  RLKHEFVNSTINNSFLTFREFMEEIYLKYYQQKVQFVTYQTALPHH-QLFIKQFGSKKLS 119

Query: 113 KITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170
            I+T        +   K++ + A    +  +    +A R  Y+   P   ++ P+ K   
Sbjct: 120 DISTIDCERFRLAIIDKYSSNYAKNMWSRFKACLGYAERLGYIDRVPFKGLDNPRGKHPD 179

Query: 171 IRPWTKEDMQQFKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSI 224
            + WT ++ ++  + +     EG    +       +GLR S+      + +        +
Sbjct: 180 TKFWTFDEFKKIINSFDISEYEGLHNYMTIWLYFMTGLRVSEGIALKWEDIDFERKWIHV 239

Query: 225 --KTQKTGTIIT--------------VELPDGFMKLLAMT-----PIGKETFFINNDKQK 263
               +K    +               ++L D  + +L            + + I+     
Sbjct: 240 HSTIEKDKNGVWYAKQQTKTVAGNRKIDLDDFTITILKKWREVQIKNDDKDYVISRFGAP 299

Query: 264 MNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG-ATAHELMATYGWKTVDQA-E 320
           +  +  S   K  A   GV + +  G+R   A+   +        +    G         
Sbjct: 300 LCKSTISRIIKRHAKITGVPEITGKGLRHSHASYLINVLHKDTLYVSYRLGHADKSTTLN 359

Query: 321 TYTK 324
           TY+ 
Sbjct: 360 TYSH 363


>gi|89894317|ref|YP_517804.1| hypothetical protein DSY1571 [Desulfitobacterium hafniense Y51]
 gi|219668726|ref|YP_002459161.1| integrase family protein [Desulfitobacterium hafniense DCB-2]
 gi|89333765|dbj|BAE83360.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219538986|gb|ACL20725.1| integrase family protein [Desulfitobacterium hafniense DCB-2]
          Length = 327

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 34/310 (10%), Positives = 86/310 (27%), Gaps = 50/310 (16%)

Query: 78  YRKSAHWGSLAVNSRISFES----YFDQIIRKSGDFDYR--KITTKHIR----------- 120
           Y       + + +++ ++      +   I      F      +T  H++           
Sbjct: 16  YINHLGVINRSPHTQKAYAQELFLFLKFICDYKPGFPPSPSSLTIGHLQQIQHTDVEAYL 75

Query: 121 -SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
                 RK+   +  +   +++  +++ +R++ +  +  + +    +  +  +    E +
Sbjct: 76  NWARTQRKNGVRALARKQAAIKSFYRYLLREDLILKDITIKLNPISQNQKAPKALEPEQI 135

Query: 180 QQFKSFWSEGS---------------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
                    G+               +    F   + +GLR S+     +Q +  N    
Sbjct: 136 ADLVDIIETGTGLSEGQLKYHLYTEKRDYAIFLTFIGTGLRLSELYGLNLQSIDFNKGCF 195

Query: 225 KT-QKTGTIITVELPDGFMKLLA-----MTPI----GKETFFINNDKQKMNATQFSIWFK 274
              +K      +         +        P       E  F++    +M+        K
Sbjct: 196 AVIRKGNKETNIYFNTEVATAIQDYIKNERPRYMLQHTEALFLSIQGNRMSKRAIQDLIK 255

Query: 275 AKATKAG------VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD- 327
                           SAH +R   AT+          +    G         Y K  D 
Sbjct: 256 KYMAILQNFGHNTEGYSAHKLRSTFATLLLRETENLAIVQDALGHSDPRTTRIYAKVLDE 315

Query: 328 RIRLGIKNSR 337
           ++R    + +
Sbjct: 316 QLRRAADHIK 325


>gi|168756433|ref|ZP_02781440.1| prophage integrase [Escherichia coli O157:H7 str. EC4401]
 gi|168770149|ref|ZP_02795156.1| prophage integrase [Escherichia coli O157:H7 str. EC4486]
 gi|195937932|ref|ZP_03083314.1| prophage integrase [Escherichia coli O157:H7 str. EC4024]
 gi|189356474|gb|EDU74893.1| prophage integrase [Escherichia coli O157:H7 str. EC4401]
 gi|189361012|gb|EDU79431.1| prophage integrase [Escherichia coli O157:H7 str. EC4486]
 gi|326338720|gb|EGD62540.1| putative integrase prophage protein [Escherichia coli O157:H7 str.
           1125]
          Length = 412

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 48/347 (13%), Positives = 108/347 (31%), Gaps = 34/347 (9%)

Query: 10  FVTKERTRHGKIIYYFRKGHG-RRIRLPYPHE--STFIPAYMSALTGS------------ 54
            +    ++ G  ++ FR  H   + R  Y       F  A    +               
Sbjct: 28  GLLLNVSKAGGKVWRFRYSHPITKKRQTYTIGRFPEFSLAEAREVRDELRRMIARGVDPV 87

Query: 55  -TPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFES-YFDQIIRKSGDFDYR 112
              K   I    K   T + + + +        L   +  + E   +  ++   G +   
Sbjct: 88  TEKKNRKIEMSLKNLQTFEAVANAWFAFKKGSELRKPTLYNIEYEVYKYLVPFFGKYSIE 147

Query: 113 KITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP--KRKTEG 170
           KIT     + +++     +   + ++ +  +  +AV    +  NP L ++     +K + 
Sbjct: 148 KITAPVAINALDAVSDKNALQKKLISRLNEIMNYAVNCGALKANPLLKIKTAFTGKKNKS 207

Query: 171 IRPWTKEDMQQFKSFWSEGSQ----PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-- 224
           +     E + +F S+W            A  F + + +R  ++ +A    +  +      
Sbjct: 208 LAALPVERLPEFLSWWDSVPHTYQIAHNALLFQILTMVRPGEAIKAEWSEIDFDSGLWII 267

Query: 225 --KTQKTGTIITVELPDGFMKLLAM--TPIGKETFFINNDKQ--KMNATQFSIWFKAKAT 278
                K      V L    + +L            F ++  +   M          A + 
Sbjct: 268 PAHKMKCHREHVVPLSSQAISILRTMQEIKRGRYVFFSSRTKDAPMGRNTIKTPI-AASK 326

Query: 279 KAGVNKSAHGVRKFSATISADAGATAHELMATYGWKT-VDQAETYTK 324
             G+  + HG R   +T+  + G     + A    K+     + Y +
Sbjct: 327 FKGI-VTLHGFRSMWSTLLNEEGFNPDVIEAALAHKSGDKIRDIYNR 372


>gi|160890930|ref|ZP_02071933.1| hypothetical protein BACUNI_03375 [Bacteroides uniformis ATCC 8492]
 gi|255692284|ref|ZP_05415959.1| integrase [Bacteroides finegoldii DSM 17565]
 gi|293369271|ref|ZP_06615860.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|294643197|ref|ZP_06721025.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294809319|ref|ZP_06768030.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
 gi|298376855|ref|ZP_06986810.1| integrase [Bacteroides sp. 3_1_19]
 gi|301309523|ref|ZP_07215465.1| integrase [Bacteroides sp. 20_3]
 gi|156859929|gb|EDO53360.1| hypothetical protein BACUNI_03375 [Bacteroides uniformis ATCC 8492]
 gi|260622016|gb|EEX44887.1| integrase [Bacteroides finegoldii DSM 17565]
 gi|292635655|gb|EFF54158.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|292641463|gb|EFF59653.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294443477|gb|EFG12233.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
 gi|298266733|gb|EFI08391.1| integrase [Bacteroides sp. 3_1_19]
 gi|300832612|gb|EFK63240.1| integrase [Bacteroides sp. 20_3]
          Length = 411

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 43/273 (15%), Positives = 102/273 (37%), Gaps = 31/273 (11%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQ------IIRKSGDFDYRKITTK---HIRSGVESR 126
            +Y K    G  A  + + +++ +        I     D   +++T          + + 
Sbjct: 118 EDYAKQVEAGMKAKGTLLKYKTVYKHLQEFLNIRYHVKDIALKELTPAFISDFEMFLRTD 177

Query: 127 KHTPSSAIQFLTS-MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           KH  ++ +      +R +   A+  E++  +P    E  K +T      TK++++     
Sbjct: 178 KHCCTNTVWLYVCPLRTMVFIAINNEWLTRDPFREYEIKKEETT-RSFLTKDEIRLLMEG 236

Query: 186 WSEGSQPRLAFEFLLY---SGLRCSDSCRAGVQHLQN-----NIFSIKTQKTGTIITVEL 237
             + ++  L  +  L+   +GL  +D      ++++         +I  QKTG +  + L
Sbjct: 237 KLKNAKQELYRDLYLFCAFTGLSFADMRNLTEENIRTYFDEHEWININRQKTGVVSNIRL 296

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW---FKAKATKAGVNK--SAHGVRKF 292
            D   +++           +  + +      ++      +A A + G+ K  + H  R  
Sbjct: 297 LDIAKQIIDKYRG------LCENGRIFPVPHYNTCLAGIRAVAKRCGITKHITWHQSRHT 350

Query: 293 SAT-ISADAGATAHELMATYGWKTVDQAETYTK 324
           +AT +    G     + +  G K++   + Y K
Sbjct: 351 AATTVFLSNGVPIETVSSMLGHKSIKTTQIYAK 383


>gi|154492801|ref|ZP_02032427.1| hypothetical protein PARMER_02440 [Parabacteroides merdae ATCC
           43184]
 gi|154087106|gb|EDN86151.1| hypothetical protein PARMER_02440 [Parabacteroides merdae ATCC
           43184]
          Length = 409

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 39/238 (16%), Positives = 82/238 (34%), Gaps = 23/238 (9%)

Query: 105 KSGDFDYRKITTKHIRSGVE----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
            + D  + ++    +            H+     +   +++ L + A R+          
Sbjct: 153 HTADIPFGQMEEDFLECLQHYSVGKLGHSQGHYRKMALAVKKLCRLAYREGLTERQLFAH 212

Query: 161 VERPKRKTEGIRPWTKEDMQQ-----FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ 215
           +E  + + +  R   +  + +     F+ +  E    R  F F  Y+G+   D      +
Sbjct: 213 IEIERGENKQPRALDRASLDKLLGLTFEPYEVELETARNLFLFSCYTGVAYCDMVALNRE 272

Query: 216 HLQNN-----IFSIKTQKTGTIITVELPDGFMKLLAMTPIG-KETFFINNDKQKMNATQF 269
           HL  +         + QKT T+  V+L    ++++       + T F       +  + +
Sbjct: 273 HLFTDDEGALWLKFRRQKTNTLCRVKLLSEAVRMIERYQSEERNTLFA-----PITYSAY 327

Query: 270 SIWFKAKATKAGV--NKSAHGVRKFSATIS-ADAGATAHELMATYGWKTVDQAETYTK 324
            +  KA   +AG+    SAH  R   AT+   + G     +    G   +   E Y  
Sbjct: 328 LVQLKALQLRAGISIPLSAHVGRHTFATLITLERGVPIETVSRMLGHSNIQTTERYAH 385


>gi|312884536|ref|ZP_07744240.1| phage integrase family site specific recombinase [Vibrio
           caribbenthicus ATCC BAA-2122]
 gi|309367848|gb|EFP95396.1| phage integrase family site specific recombinase [Vibrio
           caribbenthicus ATCC BAA-2122]
          Length = 327

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 45/304 (14%), Positives = 84/304 (27%), Gaps = 61/304 (20%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
           I E R+       ++ +  ++  +    IR +     + + T  + + +    +    AI
Sbjct: 6   IEEIRRHMRMRGYSLKTEKAYIYWIKYFIRFNKLKHPQDMGTTEVTAYLSYLANEQHVAI 65

Query: 135 QF----LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
                 L ++  L+   +++        L     K++ +     T  ++Q   S  S   
Sbjct: 66  NTQKVALNAIAFLYNQFLQRPLGD----LGFTYAKKQRKVPSVLTPNEVQLILSHLS--G 119

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNN--IFSIKTQKTGTIITVELPDGFMKLLAMT 248
                F  L  SGLR ++  R  VQ L       +++  K        L    +  L + 
Sbjct: 120 VNHSIFSLLYGSGLRVNECLRIRVQDLDLQNLSLTVRDGKGKKDRVTLLSPTLIDSLQLQ 179

Query: 249 PIGKETF------------FINNDKQKMNATQFSI--WF--------------------- 273
                                +   +K     F    W                      
Sbjct: 180 IQKASKIQEEDIKQGIGPSLPHALGKKY-PNAFKQIAWMFIFPSLSICRHPLTNKLCRHH 238

Query: 274 ----------KAKATKAGV-NKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
                     K    +A + NK    H  R   AT    +G     +    G   V   +
Sbjct: 239 LHDSAPRKALKRAVQQAKIFNKRITCHTFRHSFATELLRSGQDIRTVQELLGHSDVATTQ 298

Query: 321 TYTK 324
            YT 
Sbjct: 299 IYTH 302


>gi|237725748|ref|ZP_04556229.1| integrase [Bacteroides sp. D4]
 gi|229435556|gb|EEO45633.1| integrase [Bacteroides dorei 5_1_36/D4]
          Length = 409

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 37/237 (15%), Positives = 81/237 (34%), Gaps = 20/237 (8%)

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
            +E++ +   +    L  ++ + + A +  Y           PK+     R  ++E  ++
Sbjct: 174 AMENKGYAIDTVRHHLAILKKICRLAYKDGYADRIHFRHFTLPKKTETTPRALSRESFER 233

Query: 182 FK-----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGT 231
            +     ++       R  F F  Y+G+  +D      ++L  +         + +K   
Sbjct: 234 IRDVEIPAYRKSHILARDMFLFGCYTGVCYADVVSITHENLYTDEDGALWLKYRRKKNEL 293

Query: 232 IITVELPDGFMKLLAMTPI-GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HG 288
             +V+L    + L+       ++T F       +         KA AT AG+      H 
Sbjct: 294 RASVKLLPEAVTLIEKYHSEDRDTLFPLLHWPNLRRH-----MKALATLAGIKDDLCYHQ 348

Query: 289 VRKFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
            R   A++   +AG     +    G   +   + Y +     +L     + I +  D
Sbjct: 349 ARHSFASLITLEAGVPIETISRMLGHSDISTTQVYAR-VSPKKLFEDMDKFIEATHD 404


>gi|227500239|ref|ZP_03930308.1| possible phage integrase [Anaerococcus tetradius ATCC 35098]
 gi|227217629|gb|EEI82938.1| possible phage integrase [Anaerococcus tetradius ATCC 35098]
          Length = 353

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 44/344 (12%), Positives = 105/344 (30%), Gaps = 47/344 (13%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHES---------TFIPAYMSALTGSTPKREYINSPRKKPT 69
           GK  Y F+   G+++      +S           +  Y   + G+   ++          
Sbjct: 10  GKTYYKFQIRLGKKVTTRSGFKSSNAAIYKYTQMMKDYEDEVQGNILYQKAYE------- 62

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
             KWL   Y  +    +L+  + + +    + I+   G    + IT         + K  
Sbjct: 63  --KWL-RLYETTVEESTLS--TTVGYFK--NHILPHFGQTKIQDITINKCEDFALAYKDY 115

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLS--VERPKRKTEGIRPWTKEDMQQFKSFWS 187
            S         + + ++A +   +  NP     + R     E  +    +++ Q  +++ 
Sbjct: 116 -SKGKSMYYYAKSVMEYAKKHYNLKENPFEKASLPRFYEHEEECKFLEPKEVSQLINYFE 174

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK-----TGTIITVELPDGFM 242
                +  F  L Y GLR  ++     + +     ++   K         + ++ P    
Sbjct: 175 HNIFRKTLFRVLCYVGLRRGEALALTWEDIDFKTKTLTVNKAIGINKQNQVYLKGPKNKA 234

Query: 243 KLL--------------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAH 287
                                   +  F +     +  +  +   +    K G+ K + H
Sbjct: 235 SYRTLDLDSKTLLSLKELKLSSKSDLVFPSPIGGYLRLSTPNEKLQETLEKLGIKKITLH 294

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIR 330
            +R   A++   +G +   + A  G    +     Y     + +
Sbjct: 295 DLRHTHASLLFASGRSVKYVQARLGHSRAETTMNIYVHVTQKEQ 338


>gi|209884669|ref|YP_002288526.1| phage integrase [Oligotropha carboxidovorans OM5]
 gi|209872865|gb|ACI92661.1| phage integrase [Oligotropha carboxidovorans OM5]
          Length = 404

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 50/303 (16%), Positives = 98/303 (32%), Gaps = 58/303 (19%)

Query: 69  TTLKWLISEYRKSAH--WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
            T + +   Y       +  L   ++  +++Y   +    G     +   + +R   +  
Sbjct: 75  GTFRSVFDLYETDPQSPFHRLKPGTKHPYKTYMRMMRAHIGHCHIDQTDGRDVRDWFKEW 134

Query: 127 K--------HTPSSAIQFLTSMRVLFKWAVRQ------EYVAINPCLSVERPKRKTEGIR 172
                     T + A   L  ++   ++A+        E+ A  P  ++E+PK +   I 
Sbjct: 135 TKPEKEGDPRTIAKANMALAVLKSSLQFAIECRKPGCVEFRACIP-KNLEKPKARRFAI- 192

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLL-YSG-LRCSDSCRA------------------ 212
                 + + ++   E  QP  A  + L + G LR  D                      
Sbjct: 193 --PAGQVAKARAAAHEQQQPGAALAYALQFEGTLRQWDVIGQWVDMSDPRPSAIHHNGKK 250

Query: 213 ----GVQHLQNNIF-SIKTQKT----GTIITVELP------DGFMKLLAM-TPIGKETFF 256
                   + +N+    K  KT    G  I ++L       +     LA   P+      
Sbjct: 251 WFGPTWNDVDDNLILRWKPTKTEESSGEEIVIDLRACPMVMEELELTLAAGKPLSGPLVV 310

Query: 257 INNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWK 314
                Q   +  F   ++  AT AG++K      +RK  +T +  +GA+  +L    G  
Sbjct: 311 DRRTGQPFLSQPFETIWRKAATAAGISKKVWNRDLRKSGSTEARRSGASVDDLQKLMGHV 370

Query: 315 TVD 317
              
Sbjct: 371 EGS 373


>gi|116495550|ref|YP_807284.1| integrase [Lactobacillus casei ATCC 334]
 gi|116105700|gb|ABJ70842.1| Integrase [Lactobacillus casei ATCC 334]
          Length = 308

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 32/283 (11%), Positives = 84/283 (29%), Gaps = 43/283 (15%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
            K  I  Y++    G++   +   ++     ++  + D    ++  +  +  +       
Sbjct: 12  FKQWIELYKE----GAVRPVTYQKYQMSHKHLVTLAPDLHMDELKRRTYQELINEF---- 63

Query: 131 SSAIQFLTSMRVLFKW-------AVRQEYVAINPCLSVERPKRKTEGIRP--WTKEDMQQ 181
            +A     +              A+ +  +  +P   V      +   +     + ++ +
Sbjct: 64  -AANHEKQTTLDFHHHLKAAILDALDEGILEQDPTRKVVIKGTVSRVHKVKFLNQHELTK 122

Query: 182 FKSFWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSIKTQKT---------- 229
             +           +  LL   +GLR  ++             ++   KT          
Sbjct: 123 LLALLDLDHGLDWDYFLLLIAKTGLRFGEALGVTPMDFDMAKLTLTINKTWDYKSATGSF 182

Query: 230 ----------GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK 279
                        +  ++   F   +   P  K   F+ + ++  N T   I  +    +
Sbjct: 183 AETKNTASVRKVPLDWQVAMQFAAQIKSLPQDKP-IFVTDGQRVYNETANDILERK-CKR 240

Query: 280 AGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
           A +   S HG+R   A++   AG +   +    G   +   + 
Sbjct: 241 ASIPVISIHGLRHTHASLLLYAGVSVGSVARRLGHANMSTTQK 283


>gi|84687247|ref|ZP_01015127.1| Possible integrase/recombinase [Maritimibacter alkaliphilus
           HTCC2654]
 gi|84664680|gb|EAQ11164.1| Possible integrase/recombinase [Rhodobacterales bacterium HTCC2654]
          Length = 145

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 61/140 (43%), Gaps = 13/140 (9%)

Query: 212 AGVQHL--QNNIFSIKTQKTGT---IITVELPDGFMKLLAMTPIGKETFFINNDKQKM-N 265
            G  +L   +   +I+ Q++      +TV + +     L +    ++TF +        +
Sbjct: 4   LGPHNLTEMDGELAIQWQQSKAVSREVTVLVAEMPRMELDIHNGVRDTFLVTERGNPFAS 63

Query: 266 ATQFSIWFKAKATKAGV-------NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           +       +    +AG+       N+S H VR+  A + A+ GA+ +E+M T G      
Sbjct: 64  SGSLDNRIRKWVEQAGITDAQGKANRSQHVVRRGVAQLLANEGASEYEIMTTLGHSDPRT 123

Query: 319 AETYTKGADRIRLGIKNSRR 338
           A  YT  ADR  +G+  SR+
Sbjct: 124 ARIYTDKADRAGMGVSASRK 143


>gi|126175754|ref|YP_001051903.1| phage integrase family protein [Shewanella baltica OS155]
 gi|125998959|gb|ABN63034.1| phage integrase family protein [Shewanella baltica OS155]
          Length = 311

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 39/272 (14%), Positives = 86/272 (31%), Gaps = 31/272 (11%)

Query: 85  GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKH------TPSSAIQ 135
             L++NS+ S  S    I R      D    K+     +  ++ R        +  S  +
Sbjct: 12  SRLSINSQRSISSQMRSIARLMQWQEDCLDDKLCQIDYQQALQIRAVMTHAQWSARSINR 71

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR---PWTKEDMQQFKSFWSE---- 188
            + +++ + K A       ++   +++   +   G     P + E +     +       
Sbjct: 72  AMIAIKNIVKVAALMNKADLSQVANLQTINQVKHGEHQGTPLSTEQVTAVLDYLRAQKGT 131

Query: 189 -GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDG----F 241
             ++  + F   L +GLR S+     +     N+   ++   K     T+ LP+      
Sbjct: 132 FATRNLVIFSLFLGTGLRRSELSALMLSDYDANLHTLTVAAGKGNKSRTLFLPEWVEQNL 191

Query: 242 MKLLAMTPIGKETFFI--NNDKQ-----KMNATQFSIWFKAKATKAGVN-KSAHGVRKFS 293
           +  L +    +           +       + T      K    + GV+  S H +R+  
Sbjct: 192 LAWLKLRQRQQGYLVCKSTLTGKLKLTEPTSPTALYRLVKDTLYELGVDNVSPHDLRRTF 251

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKG 325
            T   +     + +    G   +     Y K 
Sbjct: 252 ITRLLEQNVDINTVRQMAGHADISTTTIYDKR 283


>gi|124005636|ref|ZP_01690475.1| transposase, putative [Microscilla marina ATCC 23134]
 gi|123988704|gb|EAY28310.1| transposase, putative [Microscilla marina ATCC 23134]
          Length = 420

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 51/310 (16%), Positives = 99/310 (31%), Gaps = 43/310 (13%)

Query: 56  PKREYINSPRKKPT-TLKWLISEYRKSAHWGSLAVNSRISFESYFDQII----RKSG--D 108
            K + I   +++   T    +    KS     L  N+    +   D +      + G  D
Sbjct: 100 KKLKAIAKGQEEKGLTF---LEALEKSKQRSGLRPNTIRRIQVTIDNLKLFLKDEFGKED 156

Query: 109 FDYRKITTKHIR------------------SGVESRKHTPSSAIQFLTSMRVLFKWAVRQ 150
                +   + +                   G         +AI+ +   R     AV+ 
Sbjct: 157 IHLSDLLKNNYKGFDIRYVDWCTTKTTVRFDGSIRYPKKHETAIREVRHFRKAINMAVQL 216

Query: 151 EYVAINP-CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG----SQPRLAFEFLLYSGLR 205
             +  NP     + PK +       T E++++             + R  F F  ++GL 
Sbjct: 217 GEMDKNPLIAEFKIPKDEKTKREVLTLEELKKLMELDLSDKLNMDRIRDCFVFQCFTGLA 276

Query: 206 CSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK 261
             D      +HL    +      +  K+ T+  V L      +L       +      DK
Sbjct: 277 FVDIDSLKKEHLFKRNERTWIIKERVKSSTVAKVPLLPQAQVILD--KYRDDPVCAGKDK 334

Query: 262 --QKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVD 317
               ++   ++++ ++ A  A + K  ++H  RK  AT+  +AG    +L    G     
Sbjct: 335 LIPVISNKNYNVYLQSMAELASIEKHLTSHVGRKTFATLVYNAGTDRSKLKEMTGHSDET 394

Query: 318 QAETYTKGAD 327
             + Y    D
Sbjct: 395 ITQIYASITD 404


>gi|22126113|ref|NP_669536.1| transposase [Yersinia pestis KIM 10]
 gi|108807462|ref|YP_651378.1| hypothetical protein YPA_1466 [Yersinia pestis Antiqua]
 gi|108811723|ref|YP_647490.1| hypothetical protein YPN_1560 [Yersinia pestis Nepal516]
 gi|145598335|ref|YP_001162411.1| hypothetical protein YPDSF_1038 [Yersinia pestis Pestoides F]
 gi|162420894|ref|YP_001606816.1| phage integrase family site specific recombinase [Yersinia pestis
           Angola]
 gi|165928348|ref|ZP_02224180.1| Int protein [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165939324|ref|ZP_02227872.1| Int protein [Yersinia pestis biovar Orientalis str. IP275]
 gi|166009285|ref|ZP_02230183.1| Int protein [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166210937|ref|ZP_02236972.1| Int protein [Yersinia pestis biovar Antiqua str. B42003004]
 gi|167420286|ref|ZP_02312039.1| Int protein [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167424753|ref|ZP_02316506.1| Int protein [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|167468176|ref|ZP_02332880.1| site-specific recombinase, phage integrase family protein [Yersinia
           pestis FV-1]
 gi|229894800|ref|ZP_04509980.1| putative transposase [Yersinia pestis Pestoides A]
 gi|229897505|ref|ZP_04512661.1| putative transposase [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229898149|ref|ZP_04513298.1| putative transposase [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229902011|ref|ZP_04517132.1| putative transposase [Yersinia pestis Nepal516]
 gi|294503853|ref|YP_003567915.1| transposase [Yersinia pestis Z176003]
 gi|21959071|gb|AAM85787.1|AE013825_14 putative transposase [Yersinia pestis KIM 10]
 gi|108775371|gb|ABG17890.1| hypothetical protein YPN_1560 [Yersinia pestis Nepal516]
 gi|108779375|gb|ABG13433.1| hypothetical protein YPA_1466 [Yersinia pestis Antiqua]
 gi|145210031|gb|ABP39438.1| hypothetical protein YPDSF_1038 [Yersinia pestis Pestoides F]
 gi|162353709|gb|ABX87657.1| site-specific recombinase, phage integrase family [Yersinia pestis
           Angola]
 gi|165912665|gb|EDR31294.1| Int protein [Yersinia pestis biovar Orientalis str. IP275]
 gi|165919631|gb|EDR36964.1| Int protein [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165991840|gb|EDR44141.1| Int protein [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166208117|gb|EDR52597.1| Int protein [Yersinia pestis biovar Antiqua str. B42003004]
 gi|166961981|gb|EDR58002.1| Int protein [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167056635|gb|EDR66404.1| Int protein [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|229680907|gb|EEO77002.1| putative transposase [Yersinia pestis Nepal516]
 gi|229688865|gb|EEO80932.1| putative transposase [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229693842|gb|EEO83891.1| putative transposase [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229702273|gb|EEO90292.1| putative transposase [Yersinia pestis Pestoides A]
 gi|262362028|gb|ACY58749.1| transposase [Yersinia pestis D106004]
 gi|262365835|gb|ACY62392.1| transposase [Yersinia pestis D182038]
 gi|294354312|gb|ADE64653.1| transposase [Yersinia pestis Z176003]
          Length = 412

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 36/257 (14%), Positives = 86/257 (33%), Gaps = 46/257 (17%)

Query: 113 KITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
           +I   H ++    +  +  +   +L+    + ++AV   Y+  +P + +   K+      
Sbjct: 127 QIAGVHQKTRQLKKGRSVRTVNVYLSCFAAMMEFAVANGYIERSPFVGISPLKKSKSEPD 186

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
           P T+++  +         Q +  ++  + +G+R  + C    + +    ++I   +   +
Sbjct: 187 PLTRDEYARLMEVAPS-LQVKNIWKLAVSTGMRHGEICALAWEDIDLKEWTITISRNMAV 245

Query: 233 ITVELPD-----------------GFMKLLAMTPIGKE------------------TFFI 257
           +    P                     + +A+T +GK+                  TF  
Sbjct: 246 VHHFTPPKTESGNRTIKLTNSAIEALKEQMALTKMGKKIKVDVHLREFGKIRKDDCTFVF 305

Query: 258 N--------NDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELM 308
           +              +   FS  +     KAG+ ++ A+  R   A  +  AGA  + + 
Sbjct: 306 SPRLSARNGKGGDWYSPGVFSGTWNFALKKAGIRHRKAYETRHTFACWALSAGANPNFVA 365

Query: 309 ATYGWKTVDQA-ETYTK 324
              G  +       Y K
Sbjct: 366 NQMGHTSSQMVYSVYGK 382


>gi|324989602|gb|EGC21547.1| phage integrase family site-specific recombinase [Streptococcus
           sanguinis SK353]
          Length = 421

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 61/364 (16%), Positives = 118/364 (32%), Gaps = 70/364 (19%)

Query: 49  SALTGSTPKREYINSPRKK---PTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIR 104
            A+  +  + E   S R+K     TL+ L  E+ KS      + N+      Y D  II 
Sbjct: 56  RAIIQARLEFEKNGSTREKVIVIDTLEDLAEEWFKSYKTWVNSHNTLNRVRGYLDNYIIP 115

Query: 105 KSGDFDYRKITTKHIRSGVE--------------SRKHTPSSAI--QFLTSMRVLFKWAV 148
           K GD+   KI +  I+  +                R    S+      +  ++ +F + +
Sbjct: 116 KFGDYKPDKIESADIQLWLNDLAKKSKESIESGVKRADKGSAKDFGAVIHKLKDIFDYGI 175

Query: 149 RQEYVAINPCLSVE---RPKRKTEGIRPWTKEDMQQFKSFWS--EGSQPRLAFEFLLYS- 202
               +  NP +SV+   +PK   + I     + +  + ++    + ++    F+ +  + 
Sbjct: 176 TNYGLITNPVVSVKIPPKPKSNKQRIMVLHDDSLVVWLNYLESLDNTRANRRFKLICNTL 235

Query: 203 ---GLRCSDSCRAGVQHLQNNIFSIKTQKT-----------------------------G 230
               LR ++     +  L     SI   KT                              
Sbjct: 236 LASALRINELLALTIDDLDFENSSINVSKTLMWKTANKKDGTKGEVICKATPKTDAGNRS 295

Query: 231 TIITVELPDGFMK--------LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
             + + + +  +         L           F       M         K +    G+
Sbjct: 296 VPVPLPIIEKLIDFHNEMNKYLELHNRHRTRLIFPTIYGNYMCDRNERTTLKKRLVGLGL 355

Query: 283 -NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKN--SRR 338
            N   H  R   A++  +AG    EL    G K++    +TY + A + +L   N    +
Sbjct: 356 PNYGFHLFRHTHASMLLNAGTNWKELQVRMGHKSISTTMDTYAELAPQRKLEAVNLYLDK 415

Query: 339 ISSV 342
           I+ +
Sbjct: 416 IAEL 419


>gi|251793523|ref|YP_003008252.1| integrase [Aggregatibacter aphrophilus NJ8700]
 gi|247534919|gb|ACS98165.1| integrase [Aggregatibacter aphrophilus NJ8700]
          Length = 414

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 49/306 (16%), Positives = 101/306 (33%), Gaps = 28/306 (9%)

Query: 45  PAYMSALTGSTPKREYINSPRKKPT--------TLKWLISEYRKSAHWGSLAVNSRISFE 96
             Y+S L  +     +     +            + W   EYRK+    + + N +    
Sbjct: 78  EEYLSLLAQNIDPATHRQQQEQAKQNELNNTYEAVAWAWLEYRKTK--KNFSDNYQKDVI 135

Query: 97  SYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKHTPS--SAIQFLTSMRVLFKWAVRQEYV 153
           S  ++ ++   G     +IT        +  +         + +     +  +A+ ++ +
Sbjct: 136 SLINRCLLPHFGHLPISQITAPMALKAFKQYQDEGHLEKLKRTIQKHNEIMTYALHRDLI 195

Query: 154 AINPCLSV--ERPKRKTEGIRPWTKEDMQQF---KSFWSEGSQPRLAFEFLLYSGLRCSD 208
           + NP  ++  E      E  +    ED+ +F           Q R    + L +  R ++
Sbjct: 196 SFNPTANIAKEFDSPTVEHFKTLKPEDLSEFMSTLQNAQIHLQTRYLILWQLLTMTRPNE 255

Query: 209 SCRAGVQHLQNNIFSIK----TQKTGTIITVELPDGFMKLLAMTP--IGKETFFINNDKQ 262
           +  A    +              K G    + L    + LL       G +T+   + K 
Sbjct: 256 AATAKWADIDEKNRIWTIPAEQMKRGIEHRITLSRQALALLGQIKKLSGGKTYLFPSVKN 315

Query: 263 KMNA--TQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
             +   TQ +     +   AG    AHG+R  ++T   D G  +  +         D+ +
Sbjct: 316 PQSHVNTQTANAAIKRMGYAG-KLVAHGLRSIASTYLNDQGFNSDLIEVALSHLNSDRVK 374

Query: 321 T-YTKG 325
           T Y +G
Sbjct: 375 TAYDRG 380


>gi|153811377|ref|ZP_01964045.1| hypothetical protein RUMOBE_01769 [Ruminococcus obeum ATCC 29174]
 gi|149832504|gb|EDM87588.1| hypothetical protein RUMOBE_01769 [Ruminococcus obeum ATCC 29174]
          Length = 425

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 46/323 (14%), Positives = 92/323 (28%), Gaps = 84/323 (26%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH---IRSGVESRKHTPSSAIQFLTSMR 141
            S+   +  ++ + F+++    G     ++   H   +  G+E   +  ++ IQ L+ +R
Sbjct: 83  HSVKATTLSNYVNGFERVREYIGYMRLIEVRPTHILDMIKGLEEEGYARTTVIQSLSVVR 142

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGI------------RPWTKEDMQQFKSFWSEG 189
            LFK A   + + I+P   ++ PK +   I            +  +  D  +F       
Sbjct: 143 QLFKKAYGGKMIPIDPVADIKLPKEEPGEIPDEKIMQEQEDEKCLSIYDTHRFLESCK-N 201

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT--------------- 234
           ++    F  LL++GLR  ++       L      ++  KT   +T               
Sbjct: 202 TRYYELFFILLHTGLRIGEALALEWCDLDFKHEKLRVYKTLNRVTKYYDLKGNELPERYS 261

Query: 235 ---------------VELPDGFMKLLAMTPIGKE----------------------TFFI 257
                          V L D  +         ++                        F 
Sbjct: 262 TIQITTPKKSASNRKVPLTDAVIAAFMSWKEKQDRDKEKLGKNWGKPNILLKKYPGLIFT 321

Query: 258 NNDKQKMNATQ--------FSIWFKAKATKAG--------VNKSAHGVRKFSATISADAG 301
            +  +    +           I  K +   A         ++   H  R    T    +G
Sbjct: 322 TSSGRSYLPSSAQTECRRIVGIVNKHEIALAEKENRDPNLMDVHPHIFRHTFVTRCIQSG 381

Query: 302 ATAHELMATYGWKTVDQAETYTK 324
             A  +    G         YT 
Sbjct: 382 MDAATVKKIAGHSDEKMTNYYTH 404


>gi|146300425|ref|YP_001195016.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
 gi|146154843|gb|ABQ05697.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
          Length = 305

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 25/189 (13%), Positives = 57/189 (30%), Gaps = 22/189 (11%)

Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSI 224
             +     + E+++            R         GLR S+     V+ +     +  +
Sbjct: 118 NGKARNALSVEEIRNIYQHCES-DLQRALLSVAYGCGLRRSEITALNVRDVMLSKGMLIV 176

Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIG------------KETFFINNDKQKMNATQFSIW 272
           +  K      V + D  ++ L                  ++ FFI++  ++MN    +  
Sbjct: 177 RDGKGSKRREVPMSDIVVEYLGKYITEERYEKLISENKVQDAFFIHDSGKRMNGEYLNNT 236

Query: 273 FKAKATKAG----VNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            K    +      + K  + H +R   A    +  A    +    G   ++    Y    
Sbjct: 237 LKKMIEQTNDYKLIQKEITLHCLRHSIANHLMEKNAGIDFIRGFLGHSGINTTYIYA-VR 295

Query: 327 DRIRLGIKN 335
           ++ R  +  
Sbjct: 296 NKKRKPVTA 304


>gi|299142941|ref|ZP_07036067.1| site-specific recombinase, phage integrase family [Prevotella oris
           C735]
 gi|298575557|gb|EFI47437.1| site-specific recombinase, phage integrase family [Prevotella oris
           C735]
          Length = 308

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 39/286 (13%), Positives = 96/286 (33%), Gaps = 37/286 (12%)

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDY--RKITTKHIRSGV 123
           K  T++ +   + KS     +  ++  ++    +  ++   GD +    K+  + +   +
Sbjct: 2   KAKTIREIALAW-KSEKQRYVKQSTYAAYVLILENHLLSSFGDCEVLSEKLVQEFVLQKL 60

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL-SVERPKRKT-EGIRPWTKEDMQQ 181
            +   +  +    L  +R++ K+ V+  ++  N C   ++ P  +    I   T    ++
Sbjct: 61  NA-GLSIKTVKDMLIVLRMVMKFGVKNGWM--NYCEWDIKYPTTEGNREIEVLTVAQHKK 117

Query: 182 FKSFWSEGSQPR-LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV----- 235
              F  +    R L     L +GLR  + C      +  +  +I   +T   I +     
Sbjct: 118 ILDFIRQNFTFRNLGIYISLTTGLRIGEICGLMWADINTDTGTITVSRTIERIYIVEGEH 177

Query: 236 -----------------ELPDGFMKLLAMTPIGKET----FFINNDKQKMNATQFSIWFK 274
                            E+P     L  + P+ K      + + N+++      +  ++ 
Sbjct: 178 KHTELVINTPKTKNSCREIPMNKELLAMVKPLKKVVNVNFYVLTNEEKPTEPRTYRNYYH 237

Query: 275 AKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
                  +     HG+R   AT   ++      +    G   +   
Sbjct: 238 RLMKHLDIPWLKYHGLRHSFATRCIESNCDYKTVSVLLGHANITTT 283


>gi|239943966|ref|ZP_04695903.1| traSA:integrase fusion protein [Streptomyces roseosporus NRRL
           15998]
 gi|239990422|ref|ZP_04711086.1| traSA:integrase fusion protein [Streptomyces roseosporus NRRL
           11379]
 gi|291447431|ref|ZP_06586821.1| traSA:integrase fusion protein [Streptomyces roseosporus NRRL
           15998]
 gi|291350378|gb|EFE77282.1| traSA:integrase fusion protein [Streptomyces roseosporus NRRL
           15998]
          Length = 372

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 57/339 (16%), Positives = 104/339 (30%), Gaps = 39/339 (11%)

Query: 18  HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISE 77
           +GK    +R   G+     +         ++  +T S    +Y++ PR      K    E
Sbjct: 9   NGKWRARYRDLDGKE-HARHFDRKIDAQRWIDEVTASLVTGQYVD-PRSAKKPFKEYAEE 66

Query: 78  YRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHT----PSS 132
           +R          ++  +   +    +           I    ++S V S   T     S+
Sbjct: 67  WRAI---QPHRPSTAKAVAQHLRCYVYPAWEKRALGAIKPGDVQSWVTSLTTTHGLAAST 123

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
           +     ++  +F+ AVR   +  NPC   + P    + I P   E ++          + 
Sbjct: 124 SRTVFNTVNAVFRAAVRDRMIPHNPCAEAKLPSVPRKKIVPLAVEQVRTLSEEIPA--RY 181

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQN-------NIFSIKTQKTGTII----------TV 235
           +        +GLR  +     ++H+              +T K G  +          TV
Sbjct: 182 KGLVLLGAATGLRPGELFGLQLRHVDLLHATVSVEQQIQQTAKHGVYVCPPKTARSHRTV 241

Query: 236 ELP----DGFMKLLAMTPIGKET--FFINNDKQKMNATQF-SIWFKAKATKAGVNK--SA 286
            LP    D     L   P        F       +  T F    ++    KAG+ K    
Sbjct: 242 PLPRMAVDAMKAHLRDFPADGPEGWIFTAPQGGPVVYTHFMDGSWRPACAKAGIAKGTGP 301

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
           H +R   A++    G +   +    G          YT 
Sbjct: 302 HALRHHYASLLIKHGESVKTVSERLGHTNAAMTLNIYTH 340


>gi|85707507|ref|ZP_01038583.1| putative integrase/recombinase [Roseovarius sp. 217]
 gi|85667964|gb|EAQ22849.1| putative integrase/recombinase [Roseovarius sp. 217]
          Length = 313

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 36/240 (15%), Positives = 78/240 (32%), Gaps = 33/240 (13%)

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC--------LSVERPKRKTEGIRPWTK 176
            R +  +S    L +++   ++ V  +Y    P          ++   + + + ++  +K
Sbjct: 72  DRGNGATSRNARLAAIKSFMRF-VEYQY----PALLAQVAQIRAIPTKRCENKLVQHLSK 126

Query: 177 EDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI---FSIKTQKT 229
           +++Q   +        G++ R         GLR S+   A +  L         ++ +  
Sbjct: 127 DEVQAVLNAPDVTTRLGARDRAMMHLCFAGGLRVSELVGAALTDLVLGQAPSLLVRGKGR 186

Query: 230 GTIITVELPDGFMKLLAMTPIGKET----FFINNDKQKMNATQFSIWFKAKATKAGVNK- 284
                         L A   +   T     F+N + + M  + F         KA  +  
Sbjct: 187 KHRHFPLWKQTASDLRAWLAVRGLTPAPEIFVNAEGRAMTRSGFEYVLDKHVVKASQHCP 246

Query: 285 -------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNS 336
                  S H +R   A I  +A     ++    G   +   ETY +  A +    ++  
Sbjct: 247 SLAGRSVSPHQLRHSCAVIMLEATRDIRKVALWLGHADIRTTETYLRVDAAQKLEAVEAV 306


>gi|77412620|ref|ZP_00788901.1| site-specific recombinase, phage integrase family [Streptococcus
           agalactiae CJB111]
 gi|77161330|gb|EAO72360.1| site-specific recombinase, phage integrase family [Streptococcus
           agalactiae CJB111]
          Length = 368

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 61/326 (18%), Positives = 106/326 (32%), Gaps = 43/326 (13%)

Query: 8   PPFVTKERTRHGKIIY----YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63
             +    R + G+I Y          G+R R    ++  F   + S              
Sbjct: 4   KKYRGVSRDKQGRIYYQTEFKANNITGKRQR-KKSYKDQFGNPFRSEKQAYDELCRVRVE 62

Query: 64  PRKKPT------TLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT 116
            + K        +    + E Y         AV  R +   +    +   G     +I  
Sbjct: 63  FQTKDNNDGYYLSFSQYMEEVYLPYYKQTVQAVTYRTALTHH-KMFVEIFGSKRLSEIDV 121

Query: 117 KHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
           +           K++P+ A       +    +A R  Y+   PC S++ PK K    + W
Sbjct: 122 RECEKFRIYLIEKYSPNYAKGVWIRFKHCIGYAERLGYIDEFPCKSLDNPKGKRPDTKFW 181

Query: 175 TKEDMQQ----FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ------------ 218
           T ED+++    F     E      A     ++GLR S+        +             
Sbjct: 182 TLEDLKKVVATFDLRDYEERHRFTAIWLYFFTGLRVSEGLSLIWSDIDFDKKLLHVQSTL 241

Query: 219 ----NNIFSIK-TQKTGTII-TVELPDGFMKLLAMTPI-----GKETFFINNDKQKMNAT 267
               N +F+ K   KT   I  +EL D  + +L          G +++ +    + +N  
Sbjct: 242 EYEGNGVFTRKNPTKTSAGIRWIELDDETLNVLLRWRSIQVENGDDSYVLARFGKPLNKC 301

Query: 268 QFSIWFKAKATKAGVNK-SAHGVRKF 292
             S   K +A KAGV   +  G+R  
Sbjct: 302 TLSRILKRQAKKAGVEVITGKGLRHS 327


>gi|25012111|ref|NP_736506.1| hypothetical protein gbs2073 [Streptococcus agalactiae NEM316]
 gi|77408130|ref|ZP_00784876.1| integrase/recombinase, phage integrase family, putative
           [Streptococcus agalactiae COH1]
 gi|77413191|ref|ZP_00789389.1| putative integrase/recombinase, phage integrase family
           [Streptococcus agalactiae 515]
 gi|315612060|ref|ZP_07886977.1| phage integrase family site-specific recombinase [Streptococcus
           sanguinis ATCC 49296]
 gi|24413655|emb|CAD47732.1| unknown [Streptococcus agalactiae NEM316]
 gi|77160731|gb|EAO71844.1| putative integrase/recombinase, phage integrase family
           [Streptococcus agalactiae 515]
 gi|77173230|gb|EAO76353.1| integrase/recombinase, phage integrase family, putative
           [Streptococcus agalactiae COH1]
 gi|315315862|gb|EFU63897.1| phage integrase family site-specific recombinase [Streptococcus
           sanguinis ATCC 49296]
          Length = 421

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 67/364 (18%), Positives = 120/364 (32%), Gaps = 70/364 (19%)

Query: 49  SALTGSTPKREYINSPRKK---PTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIR 104
            A+  +  + E   S R+K     TL+ L  E+ KS      + N+      Y D  II 
Sbjct: 56  RAIIQARLEFEKNGSTREKVIVIDTLEDLAEEWFKSYKTWVNSHNTLNRVRGYLDNYIIP 115

Query: 105 KSGDFDYRKITTKHIRSGVE--------------SRKHTPSSAI--QFLTSMRVLFKWAV 148
           K GD+   KI +  I+  +                R    S+      +  ++ +F + +
Sbjct: 116 KFGDYKPDKIESADIQLWLNDLAKKSKESIESGIKRADKGSAKDFGAVIHKLKDIFDYGI 175

Query: 149 RQEYVAINPCLSVE---RPKRKTEGIRPWTKEDMQQFKSFWS------EGSQPRLAFEFL 199
               +  NP  +V+   +PK   + I     + +  + ++           + +L    L
Sbjct: 176 TNYGLITNPVSTVKIPPKPKSNKQRIMVLHDDGLVIWLNYLESLDNNRANRRFKLICNTL 235

Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-------------GTII------------T 234
           L S LR ++     +  L     SI   KT             G +I            +
Sbjct: 236 LASALRINELLALTIDDLDFENSSINVSKTLMWKTANKKDGTKGEVICKATPKTDAGNRS 295

Query: 235 VELPDGFMKLLA----------MTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGV 282
           V +P   ++ L                  T   F       M         K +    G+
Sbjct: 296 VPVPPPIIEKLRDFHHEMNKYLELHNRHRTKLIFPTIYGNYMCDRNERTTLKKRLVGLGL 355

Query: 283 -NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNS--RR 338
            N   H  R   A++  +AG    EL    G K++    +TY + A + +L        +
Sbjct: 356 PNYGFHLFRHTHASMLLNAGTNWKELQVRMGHKSISTTMDTYAELAPQRKLEAVGIYLEK 415

Query: 339 ISSV 342
           I+ +
Sbjct: 416 IAEL 419


>gi|291548678|emb|CBL24940.1| Site-specific recombinase XerD [Ruminococcus torques L2-14]
          Length = 338

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 42/303 (13%), Positives = 90/303 (29%), Gaps = 17/303 (5%)

Query: 20  KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYR 79
           K+  Y  +GH ++  + Y             L        +     K       L+  Y+
Sbjct: 26  KVTIYDEQGHAKQTPIGYAETEEKAN----ILLAEYNNNPWDIDREKVT-----LVVLYQ 76

Query: 80  K--SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFL 137
           +        L  +++ S  S F    +  G   YR + +  ++  +++     S+     
Sbjct: 77  RWSEIKLPKLGKSNQQSLRSAFKHCSKYYG-VKYRSLKSYQMQDCIDNCGCGYSTQWSIK 135

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE 197
                L ++A   + +          P        P+T+E +        +         
Sbjct: 136 NLFGHLDRFAFEIDLIDKMYSQITTAPPIPETTREPFTQEQIDALWKIKDDPWVN--TVL 193

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-KT--GTIITVELPDGFMKLLAMTPIGKET 254
             +Y+G R  +      + +    +  +   KT  G    V + D     +         
Sbjct: 194 IYIYTGFRLQELLGMKTEQVNIKDWYFEGGIKTTAGKCRIVPIHDRIKPFVKALVDEGNK 253

Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWK 314
           +      +K +   +   +     K G +K+ H  R    T   +A      +    G K
Sbjct: 254 YLFTYQGKKFSQANYYKCWGEVMEKIGADKTPHEARHTFETNLDNAKGNRKCIDMLMGHK 313

Query: 315 TVD 317
           + D
Sbjct: 314 SKD 316


>gi|315029961|gb|EFT41893.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX4000]
          Length = 408

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 64/409 (15%), Positives = 128/409 (31%), Gaps = 86/409 (21%)

Query: 13  KERTRHGKIIY-YF----RK-GHGRRIRLPYPHESTFIPAYMSA--LTGSTPKREYINSP 64
             + ++G+  + YF    R  G GR+ ++      T   A  +A  + G     E++   
Sbjct: 6   SYKLKNGQERWEYFVSNGRNNGTGRQQKIHKRGFRTHKEALKAAKIIEGQIASEEFVK-E 64

Query: 65  RKKPTTLKW----LISEYRKSAHWGSLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHI 119
             +  T+       I+EY+      ++   SRI +       I    G++   K      
Sbjct: 65  NSQKMTISKFMNIWINEYKN-----NVKEGSRIVYRDAIRMYIDPYIGNYQLNKYKPADH 119

Query: 120 RSGVESR-------KHTPSSAIQFLT----SMRVLFKWAVRQEYVAINPCLSVERP---- 164
           +  + S        K+    +   +     ++   FK A +  YV  NP   VE P    
Sbjct: 120 QKFINSLFTNKELGKNKNGLSYNTVKIVNAALSNAFKKAQKLGYVKSNPTYLVEFPLDKV 179

Query: 165 -----KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HL 217
                K K        +E++    +   +     + F  +   GLR  +           
Sbjct: 180 KEKTNKEKKLEFYTLEQENLFLDTARNFDDFMWYVFFLIIFDLGLRKGEVMALRWFNFDF 239

Query: 218 QNNIFSI-------------------------KTQKTGTIITVELPDGFM-------KLL 245
           ++NI +                          ++ K    +   + + +         +L
Sbjct: 240 RDNILTFDKQRLYRKEQPGQVILDDVKTDAGKRSLKMTNRVRNSVLELYSINYDLTSNVL 299

Query: 246 AMTPIGKETFFINNDKQ----KMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADA 300
            MT   ++  FIN+  +     +        +     KA + K   H  R  +A     A
Sbjct: 300 PMTNSNQDFLFINHRGKNVGLPIRQRSVDTAWHRIIQKANLPKIRIHDGRHTNAARLRQA 359

Query: 301 GATAHELMATYGWKTVDQAETYT--------KGADRIRLGIKNSRRISS 341
           G    ++    G K V   E Y         +  +++ L     ++  +
Sbjct: 360 GVPLEDIKDMLGHKNVKTTEIYAHVSPEVKERAVNKLELYQMQHKKSGN 408


>gi|299142969|ref|ZP_07036095.1| integrase [Prevotella oris C735]
 gi|298575585|gb|EFI47465.1| integrase [Prevotella oris C735]
          Length = 428

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 54/325 (16%), Positives = 117/325 (36%), Gaps = 54/325 (16%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWLISE---YRKSAHWGS----LAVNSRISFESYF---D 100
           L G    R  + +P+ +      LI +   +     +      L   ++ +FE +    +
Sbjct: 103 LKGVYTSRSKVEAPKTEE-----LIHQKTFWEIYDEFTEENGKLNDWTKATFEKFAVQRN 157

Query: 101 QIIRKSGDFDYRKITTKHIRSGVE----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAIN 156
            +   + +  +   T + +   +E      K   S+  + +  ++   +W++++ Y   N
Sbjct: 158 HLHDFNPNISFEDFTEEGLNDYLEFLGHQLKMRNSTISKQVGFLKWFLRWSMKKGY-HQN 216

Query: 157 PCLSVERPKRKT--EGIRPWTKEDMQQFKSFWSEGS-----QPRLAFEFLLYSGLRCSDS 209
                 +PK K   + I   T+++ +Q + +   GS     + R  F F  ++GLR SD+
Sbjct: 217 AAFETYKPKLKNPDKAIIFLTRKEQEQLRDYQIPGSKQYLERVRDVFSFCCFTGLRYSDA 276

Query: 210 CRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK-MNATQ 268
                  ++++   I T KT   + +EL      +L      K+  F N+     ++  +
Sbjct: 277 YNLRRSDIKDDHIDITTIKTTDHLKIELNKHSRSILDKY---KDVPFKNDKALPVISNQR 333

Query: 269 FSIWFKAKATKAGVN-----------------------KSAHGVRKFSATISADAGATAH 305
            + + K     AG++                          H  R+     +   G  A+
Sbjct: 334 MNEYLKELCELAGIDSPVHITYYRGQQRIDETRPKYELMGTHAARRTFICNAILLGIPAN 393

Query: 306 ELMATYGWKTVDQAETYTKGADRIR 330
            +M   G       + Y   AD  +
Sbjct: 394 VIMKWTGHSDYKAMKPYIDVADETK 418


>gi|160934351|ref|ZP_02081738.1| hypothetical protein CLOLEP_03222 [Clostridium leptum DSM 753]
 gi|156867024|gb|EDO60396.1| hypothetical protein CLOLEP_03222 [Clostridium leptum DSM 753]
          Length = 357

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 53/290 (18%), Positives = 96/290 (33%), Gaps = 43/290 (14%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR-- 126
           + K  +  Y +      +  N+  + E     +++   G      IT + I +       
Sbjct: 57  SFKSFVQHYSEDMQ-ARIKENTWATKEHIIQTKLMPYFGKLKMCNITAQQIITWQNKLIN 115

Query: 127 ----KHTPSSAIQFLTS---MRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKED 178
                  P S +   T    +  +F  AVR   +  NPC       K+K   +  WTKE+
Sbjct: 116 YKGDNGKPYSPVYLKTIHNQLSAIFNHAVRYYNLKENPCQKAGSMGKKKNREMLFWTKEE 175

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---------------NNIFS 223
             +F     +      AFE L ++G+R  +                         N    
Sbjct: 176 YLKFADAMMDKPMSYYAFEMLYWTGIREGELLAITPADFDFEKRTVTINKSFQHLNGRDI 235

Query: 224 IKTQKT-GTIITVELPDGF-------MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKA 275
           I + KT  +  T++LP          +K+L    +    F        +  +        
Sbjct: 236 ITSPKTEKSNRTIQLPKFLCDEMQDYLKMLYDVGLEDRMF-------PVTKSYLHREMNR 288

Query: 276 KATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            A +AGV +   H +R    ++  D G +A  +    G +++D    Y  
Sbjct: 289 GAKEAGVKRIRIHDIRHSHVSLLIDMGFSATAIADRVGHESIDITYNYAH 338


>gi|257076019|ref|ZP_05570380.1| phage integrase family protein [Ferroplasma acidarmanus fer1]
          Length = 329

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 38/244 (15%), Positives = 77/244 (31%), Gaps = 19/244 (7%)

Query: 96  ESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEY-VA 154
           E    +I       +  +     I S VE R  +          +  L  W       ++
Sbjct: 23  ERRERRIRMLENHINVNEPDIGEIYSYVEMRLRSGLKKKSVRLEISDLSHWCKYIGKPIS 82

Query: 155 INPCLSVERPKRKTEGIRPWTK-EDMQQFKSFWSEG------SQPRLAFEFLLYSGLRCS 207
            +    +   K++ +      + ED+Q+ + F          ++     + L+ +G+R  
Sbjct: 83  KD---DLPVLKKEPDPDPFIPEPEDIQRMREFCISRKDKYTWARNLCMMDMLIATGMRAG 139

Query: 208 DSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA------MTPIGKETFFINNDK 261
           +   A ++  +N+   I+++K     TV LP      +                F     
Sbjct: 140 ELIHANLEDYKNSTLYIRSEKGEKDRTVPLPGKLTSEVDEYIEKYRYHSDSRALFTTRTG 199

Query: 262 QKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
           +  N  +     K     +GV +   H  R + AT     G     +    G   ++   
Sbjct: 200 R-YNYNKLRQLIKYIGVHSGVPDIHPHSFRHYYATTLVRLGVDIRRVQILVGHARIETTT 258

Query: 321 TYTK 324
            YT 
Sbjct: 259 RYTH 262


>gi|29375984|ref|NP_815138.1| phage integrase family site specific recombinase [Enterococcus
           faecalis V583]
 gi|29343446|gb|AAO81208.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis V583]
          Length = 408

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 62/409 (15%), Positives = 127/409 (31%), Gaps = 86/409 (21%)

Query: 13  KERTRHGKIIY-YF----R-KGHGRRIRLPYPHESTFIPAYMSA--LTGSTPKREYINSP 64
             + ++G+  + YF    R  G GR+ ++      +   A  +A  + G     E++   
Sbjct: 6   SYKLKNGQERWEYFVSNGRSNGTGRQQKIHKRGFRSHKEALKAAKIIEGQIASEEFVK-E 64

Query: 65  RKKPTTLKW----LISEYRKSAHWGSLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHI 119
             +  T+       I+EY+      ++   SRI +       I    G++   K      
Sbjct: 65  NPQKMTISKFMNIWINEYKN-----NVKEGSRIVYRDAIRMYIDPYIGNYQLNKYKPADH 119

Query: 120 RSGVESR-------KHTPSSAIQFLT----SMRVLFKWAVRQEYVAINPCLSVERP---- 164
           +  + S        K     +   +     ++   FK A +  Y+  NP   VE P    
Sbjct: 120 QKFINSLFTNKELGKSKNGLSYNTVKIVNAALSNAFKKAQKLGYIKSNPTYFVEFPLDKV 179

Query: 165 -----KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HL 217
                K K        +E++    +   +     + F  +   GLR  +           
Sbjct: 180 KEKTNKEKKLEFYTLEQENLFLDTARNFDDFMWYVFFLIIFDLGLRKGEVMALRWFNFDF 239

Query: 218 QNNIFSI-------------------------KTQKTGTIITVELPDGFM-------KLL 245
           ++NI +                          ++ K    +   + + +         +L
Sbjct: 240 RDNILTFDKQRLYRKEQPGQVILDDVKTDAGKRSLKMTNRVRNSVLELYSINYDLTSNVL 299

Query: 246 AMTPIGKETFFINNDKQ----KMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADA 300
            MT   ++  FIN+  +     +        +     KA + K   H  R  +A     A
Sbjct: 300 PMTNSNQDFLFINHRGKNVGLPIRQRSVDTAWHRIIQKANLPKIRIHDGRHTNAARLRQA 359

Query: 301 GATAHELMATYGWKTVDQAETYT--------KGADRIRLGIKNSRRISS 341
           G    ++    G K V   E Y         +  +++ L     ++  +
Sbjct: 360 GVPLEDIKDMLGHKNVKTTEIYAHVSPEVKERAVNKLELYQMQHKKSGN 408


>gi|310826778|ref|YP_003959135.1| integrase [Eubacterium limosum KIST612]
 gi|308738512|gb|ADO36172.1| integrase [Eubacterium limosum KIST612]
          Length = 336

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 47/288 (16%), Positives = 104/288 (36%), Gaps = 39/288 (13%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGV-ESRKHTPS 131
           L  ++ +S +   L   ++ ++    ++ +    G+   + I+ + I+  V + +K   +
Sbjct: 20  LFDKWLESKN--HLKAQTKRTYVQLINRYLRPVFGEKSVKTISEEDIQRFVSDIQKDLSA 77

Query: 132 SAIQFL-TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
             +  +   +R +F+ A+  + +  NPC     P+++    +  + +D ++ ++   + S
Sbjct: 78  KTVHEVYRCLRAVFELAIENKIIERNPCEKTVLPQKEKVKAKALSIKDQEKIENALGQSS 137

Query: 191 QPR-LAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK-------------------TQK 228
           +   +A    L  GLR S+      Q ++   NI  I+                   T K
Sbjct: 138 KALDIAILLALNLGLRLSEVIALRWQDIRFNENIVIIRHSMERVPTGDGNKTVAHLGTPK 197

Query: 229 T-GTIITVELPDGFMKLLA--------MTPIGKETFFINNDKQKMNATQFSIWFKAKATK 279
           T  +   + L   F K L         +            D    N       FK +  +
Sbjct: 198 TQSSQRKIPLEFEFSKCLKEYFQKQTSVQKKPDAFVVGKKDGNSYNGRTVERHFKKRLKE 257

Query: 280 AGV--NKSAHGVRKFSATISADAGATAHELMATYGWK-TVDQAETYTK 324
             +    + H +R   AT + ++G     + A  G   T    + Y  
Sbjct: 258 LMISETYTFHSLRHSFATRAMESGVVIKVISALLGHSQTATTTDIYLH 305


>gi|295085954|emb|CBK67477.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A]
          Length = 386

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 52/276 (18%), Positives = 99/276 (35%), Gaps = 32/276 (11%)

Query: 94  SFESYFDQIIRKSG--DFDYRKITTKHIR----SGVESRKHTPSSAIQFLTSMRVLFKWA 147
            ++     +  K G  D     +    I+      +  R    S+A + + +++ L   A
Sbjct: 115 EYKCLSCYLKDKLGTEDIPLMSLDMDFIKNYYNWMLSVRGLAKSTAFERVNTLKWLMYLA 174

Query: 148 VRQEYVAINPCLS-VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAFEFLLYSG 203
           + + ++  +P    V +P+ K       ++ED+Q+  S      +    R  F F+ +SG
Sbjct: 175 MDEGWIHKHPFKKFVCKPEYKKRPF--LSEEDLQRVISVKLSYRRQQAIRDMFVFMCFSG 232

Query: 204 LRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFIN 258
           L  +D      +++  +            KT     V+L    ++L+       E  F  
Sbjct: 233 LAHADLKELSYRNVHTDSDGNTWLVGNRVKTKAPYVVKLLPIAVELIEKYRGVNE--FKV 290

Query: 259 NDKQKMNATQFSIW---FKAKATKAG--VNKSAHGVRKFSATISADAGATAHELMATYGW 313
           +  +     +        K    KAG  V  S H  R   AT++   G     L    G 
Sbjct: 291 SPDRVFPVGEIGSMEDSLKRIGEKAGCSVRVSPHVGRHTFATLALSKGMPLETLQKVLGH 350

Query: 314 KTVDQAETYT--------KGADRIRLGIKNSRRISS 341
           KT+   + Y         +  DR+R  I    R+++
Sbjct: 351 KTIISTQVYAELINPKIGEDTDRMREKIGGMFRLAN 386


>gi|167762936|ref|ZP_02435063.1| hypothetical protein BACSTE_01300 [Bacteroides stercoris ATCC
           43183]
 gi|167699276|gb|EDS15855.1| hypothetical protein BACSTE_01300 [Bacteroides stercoris ATCC
           43183]
          Length = 342

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 42/322 (13%), Positives = 106/322 (32%), Gaps = 41/322 (12%)

Query: 53  GSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL--AVNSRISFESYFDQIIRKSG--D 108
           GS  ++           +        R       L    ++  ++ +    ++   G  D
Sbjct: 17  GSPCRKRKKEESPAATGSFSGFA---RGEIARTRLMHRHSTADNYATALRSLLAFHGKKD 73

Query: 109 FDYRKITTK---HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI-----NPCLS 160
             + ++ ++        +  +     +   ++ S+R ++  AV Q          N    
Sbjct: 74  ISFAEVDSRLVDAYGEWLRRKGICKDTLSCYMRSLRAVYNKAVEQGLTEQKEPFGNVFTG 133

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFW-SEGSQPRLAFEFLLYS----GLRCSDSCRAGVQ 215
           + R ++     R   K D+ + ++     GS  +L  +  L+     G+   D       
Sbjct: 134 ISRTRK-----RSIEKADINKLRAVQVKPGSFMQLVRDVFLFCFYACGMPFVDVAFLKKS 188

Query: 216 HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF---FINN---------DKQK 263
            ++  +     +KT  ++ ++L     +++         +   F+ +          K+K
Sbjct: 189 QIKGGMLVYHRRKTDQVVQIKLEPCMQEIINRYRSDGSDYVFPFLTSQDEDTAYREYKRK 248

Query: 264 MNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
            +   ++   K     AGV+K  S++  R   AT++  +      +    G   V     
Sbjct: 249 FSY--YNKTLKTLGKLAGVDKPLSSYVARHTWATLAFMSSVDMSVIAQALGHTDVKTTRI 306

Query: 322 YTKGADRIRLGIKNSRRISSVV 343
           Y +     +    N + +  V+
Sbjct: 307 YVEDIGNGKQNSANKKLLDEVL 328


>gi|294850413|ref|ZP_06791145.1| transposase transposon [Staphylococcus aureus A9754]
 gi|294822756|gb|EFG39193.1| transposase transposon [Staphylococcus aureus A9754]
          Length = 405

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 44/320 (13%), Positives = 86/320 (26%), Gaps = 47/320 (14%)

Query: 74  LISEY-RKSAHWGSLAVNSRISFESYFDQII-RKSGDFDYRKITTKHIRSGVESRKHTP- 130
           L   Y +++A    +   ++   +   D +   K G      I     +           
Sbjct: 84  LCQLYAKQNAQRPKVRKTTQTGRKYLMDILKKDKLGARSIDSIKPSDAKEWAIRMSENGF 143

Query: 131 --SSAIQFLTSMRVLFKWAVRQEYVAINPC--LSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             S+   +  S++  F  A+  +YV  NP            T       +E +++  SF 
Sbjct: 144 AYSTINNYKRSLKASFYIAIEDDYVRKNPFNFQLNTVIDDDTIPKIALAEEQVEKLLSFA 203

Query: 187 SE---GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ------------------NNIFSIK 225
                 S+       LL +GLR S+     +  L                        + 
Sbjct: 204 KADETYSKNHDEILILLKTGLRISEFGGLTLPDLDFENRLINVDHQLLRDTESGYYIEMP 263

Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGK-----------ETFFINNDKQKMNATQFSIWFK 274
             K G      + + +     +    K           +  F+N       +  +    K
Sbjct: 264 KTKNGERQIPMVEEVYQAFKRVLANRKGGKCVEIDGYSDFLFLNRKDYPKTSDDYYSMLK 323

Query: 275 AKAT------KAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
                     +  +   + H +R    T  A+AG     L    G   ++    Y   A 
Sbjct: 324 HLVKKYNKYHEEKLPHITPHILRHTFCTNYANAGMNPKALQYIMGHANINMTLNYYAHAP 383

Query: 328 RIRLGIKNSRRISSVVDSDD 347
                +    R+      + 
Sbjct: 384 FDS-AVSELERLEKRKQQER 402


>gi|163759225|ref|ZP_02166311.1| hypothetical protein HPDFL43_05655 [Hoeflea phototrophica DFL-43]
 gi|162283629|gb|EDQ33914.1| hypothetical protein HPDFL43_05655 [Hoeflea phototrophica DFL-43]
          Length = 366

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 48/290 (16%), Positives = 94/290 (32%), Gaps = 32/290 (11%)

Query: 71  LKWLISEY-RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY-RKITTKHIRSGVESRKH 128
           +   +S Y  ++    + A ++          + R  G       +T + + + V +R+ 
Sbjct: 63  IAAAVSRYWLEAGQHHANADSTLHD----IAWLERHFGKNRLLASLTNQDVSAMVAARRA 118

Query: 129 ---TPSSAIQFLTS-MRVLFKWAVRQEYVAINPCLSVE--RPKRKTEGIRPWTKEDMQQF 182
              +P++  +  T+ +R +   A    +    P ++ +    + + E +R  + E+    
Sbjct: 119 DGVSPATVNRTATARLRAIITRARDA-WDEPVPRIAWKNHLLRERQEVLRELSAEEETAL 177

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDG 240
            +  + G    + F  L  SG R ++      +          I T K      V L D 
Sbjct: 178 FARLAPGYAELVRFSML--SGCRMAECLGLEWRLIDWHGGYIVI-TGKGDKTRHVPLSDA 234

Query: 241 FMKLLAMTPIGKETFFINNDKQ-----------KMNATQFSIWFKAKATKAG-VNKSAHG 288
              LL   P      F +  ++            +     +  F     KAG +    H 
Sbjct: 235 LRALLWPLPRAHARVFTHRIRRGSIHHKRGDIAPVEEEALNSHFARVCKKAGVIGFRFHD 294

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK--GADRIRLGIKNS 336
           +R   AT    A      L    G  +++    Y     AD  R     S
Sbjct: 295 LRHTFATRFLRATGDMRALQLILGHSSIETTMRYAHVTAADAKRRMDAMS 344


>gi|331648363|ref|ZP_08349451.1| prophage CP4-57 integrase [Escherichia coli M605]
 gi|331042110|gb|EGI14252.1| prophage CP4-57 integrase [Escherichia coli M605]
          Length = 346

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 42/261 (16%), Positives = 93/261 (35%), Gaps = 24/261 (9%)

Query: 85  GSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKHTPS--SAIQFLTSMR 141
            S+  +         ++ +    G+   ++I  + +   +E  K   +  +  + +  + 
Sbjct: 63  KSVTPDYAKDIWRSLEKDVFPAIGEIPVQQIKARTLVEALEPIKARGALETVRRLVQRIN 122

Query: 142 VLFKWAVRQEYVAINPCLSVERP--KRKTEGIRPWTKEDMQQ-----FKSFWSEGSQPRL 194
            +  +AV    +  NP   V     K + + +     E++ +     F S  S  +  R 
Sbjct: 123 EIMIYAVNTGLIDANPASGVGMAFEKPRKQNMPTLRPEELPKLMRSLFMSNLSVPT--RC 180

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGFMKLL---AM 247
             E+ L + +R +++  A    +  +    +   +  K      V L    +++L     
Sbjct: 181 LIEWQLLTLVRPAEASGARWAEIDLDAKLWMIPAERMKAKREHIVPLSTQALEILEVMQP 240

Query: 248 TPIGKETFFI--NNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAH 305
               +E  F   N+ KQ MN+   +   K      G    AHG+R  ++T   +AG    
Sbjct: 241 ISAHREHVFPSRNDPKQPMNSQTANAALKRIGY--GGKLVAHGLRSIASTALNEAGFNPD 298

Query: 306 ELMATYGWKTVDQAET-YTKG 325
            + A       ++    Y + 
Sbjct: 299 VIEAALAHSDKNEVRRAYNRS 319


>gi|315608576|ref|ZP_07883560.1| conserved hypothetical protein [Prevotella buccae ATCC 33574]
 gi|315249747|gb|EFU29752.1| conserved hypothetical protein [Prevotella buccae ATCC 33574]
          Length = 317

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 35/203 (17%), Positives = 64/203 (31%), Gaps = 42/203 (20%)

Query: 164 PKRKTEGIRP--WTKEDM----QQFKSFWSEGSQPRLA-------FEFLLYSGLRCSDSC 210
           PKR +    P  +T E+M    +       +G +P+         F  L  +G+R S++ 
Sbjct: 80  PKRPSSMYTPYVFTHEEMSRIMEAIDKSEQKGFRPKSCLICMPCLFRLLYSTGMRISEAL 139

Query: 211 RAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFM-------KLLAMTPIGK-----ETFF 256
                 +   ++   +   K G    + +            K   M P+          F
Sbjct: 140 NIKNGDVNFQSDSIFLTKTKNGKERIIPMNPELKVVLSQYLKYRDMMPVEGICKPERHLF 199

Query: 257 INNDKQKMNATQFSIWFKAKATKAGVNK-------SAHGVRKFSATI----SADAGATAH 305
           ++   +   AT    +FK    + G+           H +R   A       A  G   +
Sbjct: 200 VSGIGKPFTATTPYTFFKKILRQCGIAHKGKNQGPRVHDLRHTFAVHTLQKMATEGVDLY 259

Query: 306 E----LMATYGWKTVDQAETYTK 324
                L    G  +V + E Y +
Sbjct: 260 AGLPVLSVLLGHASVRETEWYLR 282


>gi|307608888|emb|CBW98287.1| hypothetical protein LPW_01441 [Legionella pneumophila 130b]
          Length = 397

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 50/297 (16%), Positives = 106/297 (35%), Gaps = 32/297 (10%)

Query: 57  KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKIT 115
           KR +I    +   T+  L+ E+   A   +   ++   ++   +  ++      + + + 
Sbjct: 82  KRAHIFGHVQSKITIGELLREFLAEAK-STKEASTYRGYKRVCEGHLLPMFDKVEIQDLQ 140

Query: 116 TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV-------ERPKRKT 168
              +R  +   + T  +    LT +R + + A+  +Y+  NP  S+       +  K+  
Sbjct: 141 PAMLRKWIRGLQCTTKTVANILTPLRAVIEQALVDQYIKENPLNSIIVDKLLNKETKKSD 200

Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
               P++ +++    +  SEG Q RL F+F  ++GLR S+      + +      I  ++
Sbjct: 201 YKPDPFSVDEINAILNE-SEG-QVRLLFQFAFFTGLRVSELIGLRWEDVDWQNQIIHVEE 258

Query: 229 TGTIITVELPDGFMKLLAM----------------TPIGKETFFINNDKQKMNATQFSIW 272
           T      + P     +  +                T   K   F N    K   T   I 
Sbjct: 259 TIVYKEAKGPKTEAGVRDVLLLPPALEALEQQKQYTFSQKGRVFHNPQTNKPWETSQQIR 318

Query: 273 ---FKAKATKAGVNKS-AHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
              +     +AG+     +  R   A++    G     +    G   V+   +TY +
Sbjct: 319 RTQWMHILKRAGIRYRNTYQTRHTYASMMLSQGENIMWVSKQLGHVDVEMVIKTYGR 375


>gi|294647494|ref|ZP_06725075.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294807460|ref|ZP_06766263.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
 gi|317476756|ref|ZP_07935999.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
 gi|292637154|gb|EFF55591.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294445355|gb|EFG14019.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
 gi|316906931|gb|EFV28642.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
          Length = 409

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 47/266 (17%), Positives = 87/266 (32%), Gaps = 35/266 (13%)

Query: 90  NSRISF---ESYFDQIIR---KSGDFDYRKITTKHIRSG----VESRKHTPSSAIQFLTS 139
            +   +     +  + IR      D   ++IT   I         + K   ++  +F+  
Sbjct: 129 ATYRKYEVTRRHLAEFIRSKYNVSDISIKEITPMFITDFELYLRTACKCGYNTTAKFMQF 188

Query: 140 MRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQQFKS---FWSEGSQPRLA 195
            + +   A     +  +P  S + R ++   G    T+++++               R  
Sbjct: 189 FKRIIIIARNNGILVGDPFASYKIRLEKVDRGY--LTEDEIKIILKKKMVSERLEHVRDL 246

Query: 196 FEFLLYSGLRCSDSCRAGVQHL-----QNNIFSIKTQKTGTIITVELPDG----FMKLLA 246
           F F  + GL  SD      +++      N     K  KT T + V L D       K   
Sbjct: 247 FVFSCFCGLAYSDVANLRQENIQKSFDGNLWIITKRVKTNTDVNVPLLDIPKMILKKYKG 306

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS-ADAGAT 303
             P GK    I+N K        + + K  A   G+ K  + H  R   AT +    G  
Sbjct: 307 KLPDGKILPVISNQK-------LNAYLKEIADICGIKKNLTFHLARHTFATTTTLSKGVP 359

Query: 304 AHELMATYGWKTVDQAETYTKGADRI 329
              +    G   ++  + Y +  +  
Sbjct: 360 IETVSKMLGHTNIETTQIYARITNSK 385


>gi|260593259|ref|ZP_05858717.1| integrase [Prevotella veroralis F0319]
 gi|260534816|gb|EEX17433.1| integrase [Prevotella veroralis F0319]
          Length = 414

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 46/241 (19%), Positives = 82/241 (34%), Gaps = 23/241 (9%)

Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
            R  ++ R    ++  ++L  +  L   AV Q  +  NP  + +  K + + IR   K D
Sbjct: 163 YRFYLKKRGLATATMNRYLCWLSRLMYRAVSQRLIRCNPFENAKYEKTEQK-IRFLQKSD 221

Query: 179 MQ---QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---NNIFSIK--TQKTG 230
           +      +    E  Q R  F F  ++GL  +D      +H+Q   +    I+   QKT 
Sbjct: 222 VGKLMALRVIDKEAEQARRMFVFACFTGLAIADMEHLQYRHIQMSADGQKYIRKGRQKTK 281

Query: 231 TIITVELPDGFMKLL----AMTPIGKETFFINNDKQKM------NATQFSIWFKAKATKA 280
               V L      ++       P  KE   +             + +  S          
Sbjct: 282 MEFIVPLHPIAEAIINQCKKERPSMKEMQTVKEKGDDFIFHCACSRSVMSKNLSIVGKAC 341

Query: 281 GVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338
           G+    S H  R    T+S  AG     +    G  ++   + Y +  D      ++  R
Sbjct: 342 GIRERLSYHMARHTFGTLSLSAGIPIESIAKMMGHASISSTQIYAQVTDNK--ISEDMDR 399

Query: 339 I 339
           +
Sbjct: 400 L 400


>gi|317054041|ref|YP_004118066.1| lambda integrase [Pantoea sp. At-9b]
 gi|316952036|gb|ADU71510.1| lambda integrase [Pantoea sp. At-9b]
          Length = 380

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 53/280 (18%), Positives = 94/280 (33%), Gaps = 35/280 (12%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--TPSSAIQFLTSMRV 142
           G +A ++  +       + ++  +   R I TK + S ++  K       A     +   
Sbjct: 105 GEIAKSTGKALVKSAKILEKRLPNVRLRNIDTKALASIIDEYKSEGKNRMAQFLRANWID 164

Query: 143 LFKWAVRQEYVAI--NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS--EGSQPRLAFEF 198
           +FK A     V    NP L+  +   K +  R  + ++ Q+               +   
Sbjct: 165 MFKEAQHSGEVDQGYNPALATRKVHAKVKRAR-LSFDEWQKIYEAAKNTLAPAASNSMLL 223

Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF----MKLLAMTPIGKET 254
            L +G R +D  +     + ++   I+  KTG  I + L        M L     I ++ 
Sbjct: 224 ALITGQRRTDIAKMKFSDVWDDHLHIEQSKTGAKIALPLSLRCNALGMSLGEAIAICRDR 283

Query: 255 FF--------INNDKQKMN----ATQFSIWFKAKATKAGVN-------KSAHGVRKFSAT 295
                      NN  +K          S +F      AGVN        S H  R   + 
Sbjct: 284 VLSPYMIHHVRNNRGKKPGDPIWEDSLSRYFSEARISAGVNPDKDQTPPSFHEQR-SLSE 342

Query: 296 ISADAGATAHELMATYGWKTVDQAETYT--KGADRIRLGI 333
               A     +L    G K++   + Y   +GAD  +L +
Sbjct: 343 RLYRAQGINTQL--LLGHKSIAMTDKYNDDRGADWKKLAL 380


>gi|167752569|ref|ZP_02424696.1| hypothetical protein ALIPUT_00823 [Alistipes putredinis DSM 17216]
 gi|167659638|gb|EDS03768.1| hypothetical protein ALIPUT_00823 [Alistipes putredinis DSM 17216]
          Length = 409

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 47/266 (17%), Positives = 87/266 (32%), Gaps = 35/266 (13%)

Query: 90  NSRISF---ESYFDQIIR---KSGDFDYRKITTKHIRSG----VESRKHTPSSAIQFLTS 139
            +   +     +  + IR      D   ++IT   I         + K   ++  +F+  
Sbjct: 129 ATYRKYEVTRRHLAEFIRSKYNVSDISIKEITPMFITDFELYLRTACKCGYNTTAKFMQF 188

Query: 140 MRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQQFKS---FWSEGSQPRLA 195
            + +   A     +  +P  S + R ++   G    T+++++               R  
Sbjct: 189 FKRIIIIARNNGILVGDPFASYKIRLEKVDRGY--LTEDEIKIILKKKMVSERLEHVRDL 246

Query: 196 FEFLLYSGLRCSDSCRAGVQHL-----QNNIFSIKTQKTGTIITVELPDG----FMKLLA 246
           F F  + GL  SD      +++      N     K  KT T + V L D       K   
Sbjct: 247 FVFSCFCGLAYSDVANLRQENIQKSFDGNLWIITKRVKTNTDVNVPLLDIPKMILKKYKG 306

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS-ADAGAT 303
             P GK    I+N K        + + K  A   G+ K  + H  R   AT +    G  
Sbjct: 307 KLPDGKILPVISNQK-------LNAYLKEIADICGIKKNLTFHLARHTFATTTTLSKGVP 359

Query: 304 AHELMATYGWKTVDQAETYTKGADRI 329
              +    G   ++  + Y +  +  
Sbjct: 360 IETVSKMLGHTNIETTQIYARITNSK 385


>gi|60550182|gb|AAX24185.1| integrase [Xanthomonas campestris pv. campestris]
          Length = 327

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 45/309 (14%), Positives = 91/309 (29%), Gaps = 60/309 (19%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT---- 129
           L+ + R        ++ +  ++  +  + I  +G     ++    + + +          
Sbjct: 8   LLDQVRGRLRLRHYSLRTEQAYVGWIRRFILANGKRHPAQMGQAEVEAFLTDLATRGQVS 67

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINP-CLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
             +  Q L ++  L++  +  E     P   ++ R KR        + E++ +  +    
Sbjct: 68  AGTQNQALAALLFLYREILGLEL----PWMENLVRAKRPRRIPVVLSVEEVTRLLTMLEG 123

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFM---- 242
               RL    L  SG+R  +  R  ++ +        ++  K G    V LP        
Sbjct: 124 AC--RLMAGLLYGSGMRLLECLRLRIKDVDMVRCEIVVRDGKGGKDRRVPLPRSLRGESM 181

Query: 243 -------------------------KLLAMTPIGK-----ETFFINNDK----------- 261
                                     L    P        +  F    +           
Sbjct: 182 QQRERALLLHAADLAEGAGQVFLPHALARKYPSADVEPGWQYLFPGARRSVDPRSGRVGL 241

Query: 262 QKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQA 319
             ++         A   +AG++K A  H +R   AT   +AG     +    G K V   
Sbjct: 242 HHVSEEIRQRAVHAARRRAGIDKPATCHTLRHSFATHPPEAGHDIRTVQELLGHKDVATT 301

Query: 320 ETYTKGADR 328
           + YT    R
Sbjct: 302 QIYTHVLGR 310


>gi|328945083|gb|EGG39238.1| phage integrase family site-specific recombinase [Streptococcus
           sanguinis SK1087]
          Length = 421

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 61/364 (16%), Positives = 118/364 (32%), Gaps = 70/364 (19%)

Query: 49  SALTGSTPKREYINSPRKK---PTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIR 104
            A+  +  + E   S R+K     TL+ L  E+ KS      + N+      Y D  II 
Sbjct: 56  RAIIQARLEFEKNGSTREKVIIIDTLEDLAEEWFKSYKTWVNSHNTLNRVRGYLDNYIIP 115

Query: 105 KSGDFDYRKITTKHIRSGVE--------------SRKHTPSSAI--QFLTSMRVLFKWAV 148
           K GD+   KI +  I+  +                R    S+      +  ++ +F + +
Sbjct: 116 KFGDYKPDKIESADIQLWLNDLAKKSKESIESGVKRADKGSAKDFGAVIHKLKDIFDYGI 175

Query: 149 RQEYVAINPCLSVE---RPKRKTEGIRPWTKEDMQQFKSFWS--EGSQPRLAFEFLLYS- 202
               +  NP +SV+   +PK   + I     + +  + ++    + ++    F+ +  + 
Sbjct: 176 TNYGLITNPVVSVKIPPKPKSNKQRIMVLHDDSLVVWLNYLESLDNTRANRRFKLICNTL 235

Query: 203 ---GLRCSDSCRAGVQHLQNNIFSIKTQKT-----------------------------G 230
               LR ++     +  L     SI   KT                              
Sbjct: 236 LASALRINELLALTIDDLDFENSSINVSKTLMWKTANKKDGTKGEVICKATPKTDAGNRS 295

Query: 231 TIITVELPDGFMK--------LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
             + + + +  +         L           F       M         K +    G+
Sbjct: 296 VPVPLPIIEKLIDFHNEMNKYLELHNRHRTRLIFPTIYGNYMCDRNERTTLKKRLVGLGL 355

Query: 283 -NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKN--SRR 338
            N   H  R   A++  +AG    EL    G K++    +TY + A + +L   N    +
Sbjct: 356 PNYGFHLFRHTHASMLLNAGTNWKELQVRMGHKSISTTMDTYAELAPQRKLEAVNLYLDK 415

Query: 339 ISSV 342
           I+ +
Sbjct: 416 IAEL 419


>gi|313158322|gb|EFR57724.1| phage integrase, N-terminal SAM domain protein [Alistipes sp. HGB5]
          Length = 268

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 42/264 (15%), Positives = 86/264 (32%), Gaps = 22/264 (8%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
           I  +      G++A N+  ++     +   +  + + R +            K  P +  
Sbjct: 3   IENFETYLRQGNMAENTIAAYRYAVKEYYSRHKELNKRNLLVYKTYLI---EKFKPKTVN 59

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI--RPWTKEDMQQFKSFWSEGSQP 192
             + +M     +  +           ++  K +         +  D    K+   +    
Sbjct: 60  LRIQAMNKYLDYMNKSRLR-------LKSVKVQQRSYLENVISNADYAFLKNKLKKEENQ 112

Query: 193 --RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM----KLLA 246
                  FL  +G R S+  +  V+H+Q   F I T K G I  + +P        + L 
Sbjct: 113 EWYFVVRFLAATGARVSELIQMKVEHVQIGYFDIYT-KGGKIRRIYIPKSLRKEATEWLN 171

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGAT 303
            T       F+N   +++     +   K  ATK G+N+     H  R   A    +    
Sbjct: 172 STNRTSGYLFLNRFGERITTRGIAQQLKNYATKYGLNEKVVYPHSFRHRFAKNFLEKFND 231

Query: 304 AHELMATYGWKTVDQAETYTKGAD 327
              L    G ++++    Y + + 
Sbjct: 232 ISLLADLMGHESIETTRIYLRRSS 255


>gi|241992598|gb|ACS73653.1| IntI [uncultured bacterium]
          Length = 316

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 36/306 (11%), Positives = 93/306 (30%), Gaps = 62/306 (20%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES----RKHT 129
           L+   R +      +  +  ++  +  + I         ++    + + + +    R+ +
Sbjct: 17  LLDRIRAALRLRHYSYRTEQAYVHWAKRYILFHDKRHPEQMGAAEVEAFLSALATERQVS 76

Query: 130 PSSAIQFLTSMRVLFKWAVRQE--YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            S+  Q L ++  L++  + Q+  ++      ++ R K + +     T+E+  +     +
Sbjct: 77  ASTQNQALAALLFLYREVLGQDLPWLE-----NLTRAKPREKRPVVLTREETSRLLDRLT 131

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIIT----------- 234
            G    L    +  +G+R  + C+  ++ +   +   +I++ K G               
Sbjct: 132 -GVHA-LMGRLIYGTGMRLMECCQLRIKDVDFGLREITIRSGKGGKDRVTMLPASLLEPL 189

Query: 235 ---------------------VELPDGFMKLLAMTPIGKETFFIN-------------ND 260
                                V +PD   +           F++                
Sbjct: 190 QAQCVQAREWHDADRQAKAPGVFMPDALARKYPRASTSWSWFWLFPASQHSTDPVSCIIR 249

Query: 261 KQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           +  +         +     AG+    + H +R   AT    +G     +    G   V  
Sbjct: 250 RHHLYPQSLQRAIRQAVQAAGIVKPATTHTLRHSFATHLLMSGYDIRTVQELLGHADVAT 309

Query: 319 AETYTK 324
              YT 
Sbjct: 310 TMIYTH 315


>gi|254441211|ref|ZP_05054704.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
 gi|198251289|gb|EDY75604.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
          Length = 384

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 49/279 (17%), Positives = 92/279 (32%), Gaps = 29/279 (10%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQ--IIRKSGD-----FDYRKITTKHIRSG 122
           +L  +I  Y +    G +A + R+      ++  +I   GD          IT K   + 
Sbjct: 92  SLSTVIDAYYEYKTTGKVATDKRLHNRLMRNKADLIASLGDVKISKLPIENITRKDANTY 151

Query: 123 VE--SRKHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLS--VERPKRKTEGIRPWTKE 177
            +   ++ +PSS  +   ++  +  W          +P     ++          P TK+
Sbjct: 152 RDFLLKRVSPSSVARNKNTVNAVINWHTKENGLDTSSPFNGLIIKGSTHTKNDKLPLTKQ 211

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSI-----KTQKT- 229
           D+ Q  S  S  S  +  +  L  +G+R  +     V  +   +    I     +T KT 
Sbjct: 212 DVSQLNSQMSA-STAKPIYILLRDTGMRVGEVAGLLVGDVSLQDKTLHIKPNDIRTLKTL 270

Query: 230 GTIITVELPDG----FMKLLAMTPIGKETF--FINNDKQKMNATQFSIWFKAKATKAGVN 283
           G+  T+ L +       +           F  +   +     +      F+   T     
Sbjct: 271 GSERTIPLSEASLVALQEYRQGKDHNDPIFPKYAKPNGNTNLSATLMKQFRKVITD--PL 328

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           KSAH +R   +    + G  +    A  G  T      Y
Sbjct: 329 KSAHSLRHSISDNLRNTGCDSSLKDAILGHTTAGMGARY 367


>gi|149023653|ref|ZP_01836156.1| hypothetical protein CGSSp23BS72_04465 [Streptococcus pneumoniae
           SP23-BS72]
 gi|147929752|gb|EDK80743.1| hypothetical protein CGSSp23BS72_04465 [Streptococcus pneumoniae
           SP23-BS72]
          Length = 237

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 32/217 (14%), Positives = 73/217 (33%), Gaps = 32/217 (14%)

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-SEGSQPRLAFEF 198
           ++ +F   +R+ Y + NP   +++   +   ++ WT ++ Q+F + +  E    +L F  
Sbjct: 4   LKKIFDVGLRKGYYSSNPAKLIKKLPIEKTKMQFWTVKEFQKFLTLFEPEEYNIKLLFTV 63

Query: 199 LLYSGLRCSDSCRAGVQHLQ---------------NNIFSIKTQKTGTII-TVELPDGFM 242
           L ++GLR  ++     Q +                  +  I T KT      + +     
Sbjct: 64  LFFTGLRLGEALALTWQDIDFSSNTIHITKSVYVNKGVTHISTTKTKAGTRRIVINKKLS 123

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSI------------WFKAKATKAG-VNK-SAHG 288
           + L      ++          +    F               +K    +   + K   H 
Sbjct: 124 QELQDWEKRQKHLLEQFTNNSLTLQVFQNSPITITKNAIEKQYKKIIERDSTLKKIRIHD 183

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
            R   A++  + G     +    G  ++    +TY+ 
Sbjct: 184 FRHSHASLLINQGEDYLVVKERLGHASITTTIDTYSH 220


>gi|119513454|ref|ZP_01632481.1| Phage integrase [Nodularia spumigena CCY9414]
 gi|119461886|gb|EAW42896.1| Phage integrase [Nodularia spumigena CCY9414]
          Length = 241

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 36/230 (15%), Positives = 71/230 (30%), Gaps = 39/230 (16%)

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINP----CLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           A + LT +     WAV+   V  NP       ++ PK   + I P++K +M      +  
Sbjct: 1   AKRVLTYLSACVGWAVKSGLVKDNPFMQMSADIKLPKSDDDAIDPFSKSEMDAIIGAFEA 60

Query: 189 GSQPRLAF-EFLLYSGLRCSDSCRAGVQHL------------QNNIFSIKT-QKTGTIIT 234
                  F +FL ++G R  ++     +H+             +    ++   KTG    
Sbjct: 61  NKPHYAPFIKFLFWTGCRTGEAIALQWKHIAPDYSVITFSDSYDGATKVRKCTKTGKSRR 120

Query: 235 VELPDGFMKLLA----MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS----- 285
               +   +LL           ++ F + +   ++ T+FS        +     +     
Sbjct: 121 FPCNNRLKELLRELRKANQSPDDSVFTSPNGGMISNTRFSQQVWQGGKQGTKTYTGIMPA 180

Query: 286 ------------AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
                        +  R    T+    G T   +    G       + Y 
Sbjct: 181 LVASGAVERYRCLYNTRHTFITLMLGEGLTVSTVAKLVGNSPAIILKHYA 230


>gi|313158952|gb|EFR58330.1| site-specific recombinase, phage integrase family [Alistipes sp.
           HGB5]
          Length = 389

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 43/261 (16%), Positives = 82/261 (31%), Gaps = 25/261 (9%)

Query: 89  VNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKHTPSSAI----QFLTSMRV 142
            N R         +  +    D  ++++  + +   V         A       L  +++
Sbjct: 134 DNYRKRRNRLASFLEYEYHVKDIAFKELKREFVEKFVVYLSTVKGLASGTIHSTLKKLKL 193

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ---PRLAFEFL 199
           +   A +  ++A +P       K +    R  +  ++Q          +    R AF F 
Sbjct: 194 MTYTAYKNGWIAADPFAGF-YVKAEYAERRYLSASELQAVMDVRLPNYRTGINRDAFVFC 252

Query: 200 LYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVELPDGFMKLLAMTP---IG 251
            ++GL  +D  +     +  +         K QKTGT   V+L      L          
Sbjct: 253 AFTGLSHADVVKLTHADIHTDDNGERWIIDKRQKTGTQFRVKLLPAAEMLYKRYKDTYRT 312

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA-TISADAGATAHELM 308
            E  F             ++  +  A  AG+  N + H  R   A T++   G     + 
Sbjct: 313 SEKVFPLKG----TYKTLNMSLRHVARHAGLSFNPTIHMARHTFATTVTLTQGVPLETVC 368

Query: 309 ATYGWKTVDQAETYTKGADRI 329
              G K +   + Y K  +  
Sbjct: 369 KMLGHKRITTTQIYAKITNDK 389


>gi|182413035|ref|YP_001818101.1| integrase family protein [Opitutus terrae PB90-1]
 gi|182414799|ref|YP_001819865.1| integrase family protein [Opitutus terrae PB90-1]
 gi|182416162|ref|YP_001821228.1| integrase family protein [Opitutus terrae PB90-1]
 gi|182416192|ref|YP_001821258.1| integrase family protein [Opitutus terrae PB90-1]
 gi|177840249|gb|ACB74501.1| integrase family protein [Opitutus terrae PB90-1]
 gi|177842013|gb|ACB76265.1| integrase family protein [Opitutus terrae PB90-1]
 gi|177843376|gb|ACB77628.1| integrase family protein [Opitutus terrae PB90-1]
 gi|177843406|gb|ACB77658.1| integrase family protein [Opitutus terrae PB90-1]
          Length = 432

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 46/315 (14%), Positives = 95/315 (30%), Gaps = 31/315 (9%)

Query: 47  YMSALTGSTPKREYINSPRKKPTTLKWLISEYRKS-AHWGSLAVNSRISFESY----FDQ 101
           Y+ AL   TP +              W++  Y        ++A  +     ++     + 
Sbjct: 119 YLEALKVITPPKPVQVVTPYS-----WILDPYIVHLRDERAVAPVTVKRHLAHTTAFLEF 173

Query: 102 IIRKSGDFDYRKITTKHIRSGVES-RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
           +         + I+ + + + ++   K +  +     +S+R   ++     +   +    
Sbjct: 174 LKHDVQRPRLKTISAEQVEAQLKRHMKDSKDNVRSLSSSLRSFLRYCADHGHTQADFSEL 233

Query: 161 VERPKRKTEGIRPWTKED------MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCR--A 212
           V R +       P   ED      +         G++       L+  G+R   + +   
Sbjct: 234 VPRQRHYRHASLPRGIEDSALERVLAAIDKTKPNGARDYAIILLLMAYGIRAISAAKLVM 293

Query: 213 GVQHLQNNIFSIKTQKTGTIITVELPD--------GFMKLLAMTPIGKETFFINNDKQKM 264
                +      + QK G  + V L D                TP  +           +
Sbjct: 294 EDLDWRQAKIRFRAQKGGKEVIVPLLDAVGDAIIEWLRHRDPRTPHREVFLSTKAPHGSL 353

Query: 265 NATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
           ++   S   K    KAGV+   + AH +R   A  + +       +    G + +D    
Sbjct: 354 SSMAISTVVKHYLHKAGVHQPGRGAHSLRHSWAIRALEHDQPIKAIADALGHRYIDTTYI 413

Query: 322 YTKGADRIRLGIKNS 336
           Y K AD   L     
Sbjct: 414 YAK-ADLKTLRQVAM 427


>gi|171321306|ref|ZP_02910267.1| integrase family protein [Burkholderia ambifaria MEX-5]
 gi|171093413|gb|EDT38597.1| integrase family protein [Burkholderia ambifaria MEX-5]
          Length = 284

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 33/207 (15%), Positives = 70/207 (33%), Gaps = 17/207 (8%)

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           + ++  +    +  +   A  + ++A  P    +R K   + IR  ++ +  +  +   E
Sbjct: 49  SAATVRRVGGVIVAVLNHAAERGWIARAPVR--KRKKSTAKRIRWLSQAEAGRLLAQLPE 106

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN----NIFSIKTQKTGTIITVELPDGFMKL 244
                  F   L +GLR ++        +              K    ITV L +  + L
Sbjct: 107 HLAAMAQF--SLETGLRRANVTGLQWSQVDLVRRVAWIHPDQAKARKAITVPLSETAVAL 164

Query: 245 LAMTPIGK------ETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATIS 297
           L      K      ++ F+   K        +  ++    +A + +   H +R   A+  
Sbjct: 165 LRQQLAKKRKAEHVDSVFV--YKGAPVYQTTTEAWRKALKRAHIKDFRWHDLRHTWASWH 222

Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324
              G     L    GW+T++  + Y  
Sbjct: 223 VQRGTPLQVLKELGGWETMEMVQRYAH 249


>gi|123443642|ref|YP_001007614.1| phage integrase [Yersinia enterocolitica subsp. enterocolitica
           8081]
 gi|122090603|emb|CAL13472.1| phage integrase [Yersinia enterocolitica subsp. enterocolitica
           8081]
          Length = 327

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 47/312 (15%), Positives = 101/312 (32%), Gaps = 54/312 (17%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI-----RSGVESR 126
             ++ +Y  S    SL   +  S+    +   R  GD        + I     R  +  +
Sbjct: 11  DDILQDYFFS---KSLRPATEWSYRKVINSFRRYIGDNLLPGEVDRQIVLNWRRHVLNKQ 67

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEY--VAINPCLSVE-RPKRKTEGIRPWTKEDMQQFK 183
             +  +    +  MR +F  A+  +   +  NP   V  RP  K +  +  T+ ++++  
Sbjct: 68  GLSSITWNNKVAHMRAIFNHALLYDLVVLKHNPFNGVIVRPDVKRK--KTLTQSEIEKIY 125

Query: 184 SFWSEGSQP---------RLAF----------EFLLYSGLRCSDS--CRAGVQHLQNNIF 222
                  +          R A           + L Y+G+R +     R G  +L +   
Sbjct: 126 LIMEAREREEHVGIMDKSRSALRPAWFWLTVVDILRYTGMRQNQLLHIRLGDVNLNDGWI 185

Query: 223 SIKTQ--KTGTIITVELPDGFM--------KLLAMTPIGKETFFINND--KQKMNATQ-- 268
           +++++  K      V +               +       +  F  +    +K + T+  
Sbjct: 186 NLRSEASKNHKEHRVPIARVLRPRLERLVAAAIDKGANQADQLFNISRFDGRKESITENM 245

Query: 269 ----FSIWFKAKATKAGVNKSAHGVRKFSATISADAGA-TAHELMATYGWKTVDQAETYT 323
                  +F+  + +     S H  R   AT    +       +    G  ++     Y 
Sbjct: 246 DNPPLRSFFRRLSVECRCTISPHRFRHTIATEMMKSPDRNLKVVQTLLGHSSIAVTLEYV 305

Query: 324 KG-ADRIRLGIK 334
           +G  D +RL ++
Sbjct: 306 EGDIDSLRLALE 317


>gi|289706258|ref|ZP_06502620.1| site-specific recombinase, phage integrase family [Micrococcus
           luteus SK58]
 gi|289556981|gb|EFD50310.1| site-specific recombinase, phage integrase family [Micrococcus
           luteus SK58]
          Length = 396

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 40/217 (18%), Positives = 77/217 (35%), Gaps = 27/217 (12%)

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-PWTKEDMQQFKSFWS 187
           +P +       +  +  +AV++  +  NP    + P    E  R  +++ +  +F +  S
Sbjct: 158 SPKTVRNAHALLSAVLGFAVQEGILPANPARGADLPDDDVEEERGIFSRAEWARFYAAMS 217

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ-KTGT------------- 231
           E  QP L    LL +G R  ++    V+ L    ++  ++   K G              
Sbjct: 218 ESYQPLLI--VLLVTGARWGEATALQVRDLDVAASVIHVRRAWKKGKEGAVLGVPKTARG 275

Query: 232 IITVELPDGFMKLLAMTPIGKET--FFINNDKQ---KMNATQFSIWFKAKATKAGVNK-- 284
             T+ LPD  ++ L     G+    F +                 W K     AG+ K  
Sbjct: 276 RRTIMLPDWAVETLEPLAAGRAADEFLLTAPGGGVIHRTNFVERHW-KPALAAAGIAKHL 334

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
           + H +R   A+ +   G  A  +    G +++     
Sbjct: 335 TPHSLRHTFASWALMDGVPAQVVQHRLGHESLQTTSR 371


>gi|297539030|ref|YP_003674799.1| integron integrase [Methylotenera sp. 301]
 gi|297258377|gb|ADI30222.1| integron integrase [Methylotenera sp. 301]
          Length = 313

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 46/305 (15%), Positives = 93/305 (30%), Gaps = 58/305 (19%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----SRKHTPSSAIQFLTSMRVL 143
           +  +  ++  +  + I          + +  +   +      R+ + S+    L ++  L
Sbjct: 14  SPRNEEAYVHWIRRFIFFHQKRHPDLMGSSEVELFLNYLARDRQVSASTQTIALNAIVFL 73

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203
           +   + +          ++R +R+       T ++++      S   Q  L  + L  +G
Sbjct: 74  YNDVLEKPLGL---MTGLKRVQRQHRVPVVLTADEVKATFEVMSGTCQ--LMAQLLYGAG 128

Query: 204 LRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLL-------------AMT 248
           LR S+     V+ +       +++  K G   T  LP   ++ L              + 
Sbjct: 129 LRVSECIGLRVKDIDFGAKTLTVRDGKGGKDRTTLLPSQLIERLQKHLVMVAQLHSADIA 188

Query: 249 PIGKETFFINNDKQKMNATQFSIW--------------------------------FKAK 276
             G      N   +K  A   SI                                 FK+ 
Sbjct: 189 KGGGYAAMPNALYRKYPAASRSIAWQFVFPSKVLRPWQNEFQLARWHMSDTTIQRAFKSA 248

Query: 277 ATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIK 334
              AGV K  S H +R   AT    AG     +    G +++     YT      ++   
Sbjct: 249 LNLAGVRKHASVHTLRHSFATHLLSAGTDIRTIQLLLGHRSLQTTMIYTHVIQATKMVTS 308

Query: 335 NSRRI 339
              R+
Sbjct: 309 PFDRL 313


>gi|288801542|ref|ZP_06406990.1| integrase [Prevotella sp. oral taxon 299 str. F0039]
 gi|288331523|gb|EFC70013.1| integrase [Prevotella sp. oral taxon 299 str. F0039]
          Length = 387

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 45/278 (16%), Positives = 91/278 (32%), Gaps = 30/278 (10%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR------KSGDFDYRKITTKHIRSGVE 124
           L  LI E  +      +  ++  ++ S    +        K  D  + +++   I    +
Sbjct: 109 LDRLIREKEEHVG-IDIKKDTLSNYHSTRSNLCTFIEEKYKVEDLAFSQLSENFIYDFRD 167

Query: 125 SRKHT--------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
               T          +A Q  T  R+ ++  +    +  N    V   K+  + +   + 
Sbjct: 168 FFLGTLGFQESSFYGAASQIKTVCRLAYREGLADTLLFAN-AKIVRGDKKLPKALDRCSL 226

Query: 177 EDMQ--QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKT 229
           + +   QF+    E    R  F F  ++G    D       HL  +           QKT
Sbjct: 227 DKLMKIQFEELEEEMETARDLFVFACHTGAAYCDLMELSRLHLVRDDEGSLWLKFNRQKT 286

Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAH 287
           G +  ++L    ++++      +    +     +M    +  + KA   + G+    + H
Sbjct: 287 GVLCRIKLLPEAIRIIEKYKSDERESLL----PQMKYATYQSYLKALRLRIGIAFPFTTH 342

Query: 288 GVRKFSATIS-ADAGATAHELMATYGWKTVDQAETYTK 324
             R   AT+   + G     +    G   V   E Y K
Sbjct: 343 TARHTFATLITLEQGVPIETVSKMLGHSNVSMTERYAK 380


>gi|317481276|ref|ZP_07940347.1| phage integrase [Bacteroides sp. 4_1_36]
 gi|316902609|gb|EFV24492.1| phage integrase [Bacteroides sp. 4_1_36]
          Length = 411

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 45/280 (16%), Positives = 99/280 (35%), Gaps = 45/280 (16%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQ------IIRKSGDFDYRKITTK---HIRSGVESR 126
            +Y K    G  A  +   +++ +        I     D   +++T          + + 
Sbjct: 118 EDYEKQVEAGMKAKATLSKYKTVYKHLQEFLNIRYHVKDIALKELTPAFISDFEMFLRTD 177

Query: 127 KHTPSSAIQFLTS-MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           KH  ++ +      +R +   A+  E++  +P    E  K +T      TK++++     
Sbjct: 178 KHCCTNTVWLYVCPLRTMVFIAINNEWLTRDPFREYEIKKEETT-RSFLTKDEIRLLMEG 236

Query: 186 WSEGSQPRLAFEFLLY---SGLRCSDSCRAGVQHLQN-----NIFSIKTQKTGTIITVEL 237
             + ++  L  +  L+   +GL  +D      ++++         +I  QKTG +  + L
Sbjct: 237 KLKNAKQELYRDLYLFCAFTGLSFADMRNLTEENIRTYFDDHEWININRQKTGVVSNIRL 296

Query: 238 PD----------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--S 285
            D          G  +   + P+      +                +A A + G+ K  +
Sbjct: 297 LDIAKRIVDKYRGLCEDGRIFPVPHYMTCL--YG-----------IRAVAKRCGITKHIT 343

Query: 286 AHGVRKFSAT-ISADAGATAHELMATYGWKTVDQAETYTK 324
            H  R  +AT +    G     + +  G K++   + Y K
Sbjct: 344 WHQSRHTAATTVFLSNGVPIETVSSMLGHKSIKTTQIYAK 383


>gi|256854144|ref|ZP_05559509.1| site-specific recombinase [Enterococcus faecalis T8]
 gi|256958074|ref|ZP_05562245.1| phage integrase [Enterococcus faecalis DS5]
 gi|307268339|ref|ZP_07549720.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX4248]
 gi|256711087|gb|EEU26130.1| site-specific recombinase [Enterococcus faecalis T8]
 gi|256948570|gb|EEU65202.1| phage integrase [Enterococcus faecalis DS5]
 gi|306515365|gb|EFM83899.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX4248]
          Length = 393

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 51/324 (15%), Positives = 99/324 (30%), Gaps = 60/324 (18%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132
           WL  EY+K+    +     R   +     I+   G     ++T K ++  V         
Sbjct: 77  WL-DEYKKTVRESTFIATERRMKK----HILPTFGKMRLERLTVKIVQKSVNEWYKKNEM 131

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR-----KTEGIRPWTKEDMQQFKSFWS 187
               L+    +  +AV  E +  NP   + +P       K    + +TK++++ F +   
Sbjct: 132 GKVLLSYASRVCDYAVGLEIIDSNPFKKITKPSSLKKVEKNTKRKFYTKDELEHFLNTAD 191

Query: 188 EGSQPR---------------LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT--- 229
             +                    F  L ++G+R  ++       +      +   KT   
Sbjct: 192 SIANQAKEESLVLKYYADLDCAIFRLLSFTGIRVGEALALNWNDIDLKKQVVNINKTTAI 251

Query: 230 ---GTIITVELPD----------------------GFMKLLAMTPIGKETFFINNDKQKM 264
              G  I                                L+       +  F   D    
Sbjct: 252 STNGLTINDPKTPNSIRKISFDNKTAYILKKWKLRQREALMKKGGFKTQLIFTKIDGTMF 311

Query: 265 NATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADA-GATAHELMATYGWKTVDQA-E 320
            +       K  A KA ++ S   HG R   AT+  ++    +  +    G  ++    +
Sbjct: 312 RSQDIYQRSKRLAEKANLH-SIGCHGFRHTHATLLFESDNVRSKIIQERLGHSSLQITMD 370

Query: 321 TYTKGADRIRLGIKNSRRISSVVD 344
           TYT  +D   +  + +   SS V+
Sbjct: 371 TYTHISD--EVTKEATDAFSSYVN 392


>gi|153871856|ref|ZP_02000919.1| Type 1 fimbriae Regulatory protein fimB [Beggiatoa sp. PS]
 gi|152071680|gb|EDN69083.1| Type 1 fimbriae Regulatory protein fimB [Beggiatoa sp. PS]
          Length = 178

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 24/158 (15%), Positives = 47/158 (29%), Gaps = 7/158 (4%)

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVE 236
           ++  +       +       +    LR S++       +   N    ++  K     T  
Sbjct: 14  LEATRKSKHYPQRNYCLVLLIYRHALRLSEAINMTWSQIDFANETIYVERIKGSVSGTHP 73

Query: 237 LPD---GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRK 291
           L       +KLL     G +  FI+   + +              +AG+      H +R 
Sbjct: 74  LRPVEIMALKLLKQDTNGSKHLFISQRNKPLGKRSVQHLIALFGQEAGIEFPVHPHMLRH 133

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
                 A  G     + A  G K +     YT+ + + 
Sbjct: 134 ACGYRLAKEGRDTRVIQAYLGHKDIRNTVIYTELSSKR 171


>gi|63146891|emb|CAI79475.1| integrase [Lactobacillus delbrueckii subsp. lactis]
          Length = 305

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 35/278 (12%), Positives = 85/278 (30%), Gaps = 35/278 (12%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
               I  Y+     G++   +   +      +   + +      T    +  + +   T 
Sbjct: 12  FAQWIEVYKD----GAVRERTLDKYWLSHRHLQEIAPNLKLVDTTRLEYQQILNTFAQTH 67

Query: 131 SSA--IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
             A  + F   ++ +   A  + Y+  +P   +    ++    +     + +        
Sbjct: 68  EKATVMDFHHQLKAMLLDAYDEGYIQRDPTRKIVVKGKEPSEKKAKYLNEFELKLLLRHL 127

Query: 189 GSQPRLAFEFLLY----SGLRCSDSCRAGVQHLQNNIFSIKTQKT--------------- 229
                  F++++     +GLR S++     + +      I   KT               
Sbjct: 128 DLSAFPNFDWMILLIAKTGLRFSEALGLTKEDIDLEQQMINVDKTWDYKSYTGSFKPTKN 187

Query: 230 -----GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284
                   I  +L     +++   P G+  F     K+  N+T  +   K    +  +  
Sbjct: 188 SSSVRKVPIDWKLAMQLSQVIQDLPNGESIF---AQKRVFNST-VNNLLKKHCKELNIPV 243

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
            S HG+R   A++   AG +   +    G   +   + 
Sbjct: 244 ISVHGLRHTHASLLLFAGVSIASVAKRLGHADMTTTQQ 281


>gi|254362755|ref|ZP_04978838.1| possible integrase/recombinase [Mannheimia haemolytica PHL213]
 gi|261492677|ref|ZP_05989227.1| putative integrase/recombinase [Mannheimia haemolytica serotype A2
           str. BOVINE]
 gi|261495898|ref|ZP_05992322.1| putative integrase/recombinase [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|153094383|gb|EDN75234.1| possible integrase/recombinase [Mannheimia haemolytica PHL213]
 gi|261308442|gb|EEY09721.1| putative integrase/recombinase [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261311663|gb|EEY12816.1| putative integrase/recombinase [Mannheimia haemolytica serotype A2
           str. BOVINE]
          Length = 267

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 34/263 (12%), Positives = 90/263 (34%), Gaps = 22/263 (8%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           +I  + K  +  +LA N++ ++     Q  +K       KI  +  +  +    + P + 
Sbjct: 1   MIHLFEKHLNQSNLAENTQSAYLFAVKQYHKKFDQ--LSKINLQRYKVFLIEN-YKPQTV 57

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI--RPWTKEDMQQFKSFWSEGSQ 191
              L ++    ++  ++++        +   K + +       ++ D   FK    + ++
Sbjct: 58  NLRLRAINYYLEFIKKEKW-------KLSFVKVQQKPFLENVISEADYTYFKKCLKKDNE 110

Query: 192 PR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM----KLL 245
                   F+  +G R S+  +   +H++     +   K G +  + +P        + L
Sbjct: 111 LYWYFVIRFMAATGSRVSELIQIKCEHIKIGYLDLY-SKGGKLRRIYIPKSLQKECSEWL 169

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGA 302
            +        F+N    ++     +   K  A +  ++      H  R   A    +   
Sbjct: 170 RLNNKHNGFIFLNKYGDRITTRGIASQLKVFARRYKLDPKIVYPHSFRHRFAKSFLERFN 229

Query: 303 TAHELMATYGWKTVDQAETYTKG 325
               L    G ++++    Y + 
Sbjct: 230 DIAFLADLMGHESIETTRIYLRK 252


>gi|152969929|ref|YP_001335038.1| putative transposase/integrase [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150954778|gb|ABR76808.1| putative transposase/integrase [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
          Length = 412

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 46/310 (14%), Positives = 93/310 (30%), Gaps = 64/310 (20%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRSGVESR-- 126
           T + L   + K      ++ N+    +S  D II+  +G+     I    + +       
Sbjct: 82  TFRELCELWLKIKE-TEISANTLKKTKSQVDTIIKIMNGNTMLTAIGYSDVLNCRNELLT 140

Query: 127 --------------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
                           T S+   +++ +  +  +A    ++   P  SV+  ++      
Sbjct: 141 GETFYSKNKRKNKKGRTVSTVNNYVSLLCSILNFAYISGFIQHKPFESVKSLRKTRVKPD 200

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT------ 226
           P T+E+     +  SE  Q +  ++F +YSG+R  +      + +  +   I        
Sbjct: 201 PLTREEFAALMA--SERGQSQNMWKFAVYSGVRHGELAALAWEDVDLDKGVIHVCRNLTA 258

Query: 227 ------QKTGT-----IITVELPDGFM---KLLAMTPIGKETFFINNDKQK--------- 263
                  KT        +     D      +L A  P+   TF                 
Sbjct: 259 NGMFGPPKTAAGNRTIQLLSPALDALKAQHELTAGHPVSTITFHHREYGSSEEQNLRFVF 318

Query: 264 ------------MNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMA 309
                        + +     ++A   +AG+ +    H  R   A     AGA    +  
Sbjct: 319 MPRRRKGEQKPCYSHSSIGSRWEAAVKRAGIRRRNPYHT-RHTFACWLLTAGANPSFIAN 377

Query: 310 TYGWKTVDQA 319
             G +     
Sbjct: 378 QMGHENAQMV 387


>gi|319783595|ref|YP_004143071.1| integrase family protein [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317169483|gb|ADV13021.1| integrase family protein [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 439

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 47/281 (16%), Positives = 85/281 (30%), Gaps = 23/281 (8%)

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
              PR K  T+  L            ++  +    E     I       D +    + I 
Sbjct: 128 PMKPRNKAYTIAGLRHHVVPLIGKKRISEVTSRDIEQLVADITAGKTAKDEKIGPRRRII 187

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM- 179
                 K    +A +   ++  +F +AVR++ +A NP    E  K   +  R    E++ 
Sbjct: 188 V-----KGGAGAARKVARNLSSVFSFAVRRKLIAQNPVTDAEINKVDGKRTRYLFLEEIG 242

Query: 180 ---QQFKSFWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTI 232
              +      +EG  P+      L+  +G R  +         ++      +   KTG  
Sbjct: 243 RLGKALDELEAEGVNPKALDIVRLWALTGCRRDEIAALKWSEVNIDLGCLVLDDTKTGKS 302

Query: 233 ITVELPDGFMK-------LLAMTPIGKETF-FINNDKQKMNATQFSIWFKAKATKAGVNK 284
           +                   A  P G+  + F  +           IW K    KAG+  
Sbjct: 303 VRPLAAPAAALLAALPRYADADRPEGRSKWVFPASRGDGHFQGTKRIWPKV-TKKAGLPG 361

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            + H +R    + +   G     + A  G       + Y  
Sbjct: 362 VTPHVLRHSLGSAAVSGGMALPMVAAILGHADTRSTQIYAH 402


>gi|319891787|ref|YP_004148662.1| Integrase [Staphylococcus pseudintermedius HKU10-03]
 gi|317161483|gb|ADV05026.1| Integrase [Staphylococcus pseudintermedius HKU10-03]
          Length = 368

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 53/359 (14%), Positives = 105/359 (29%), Gaps = 40/359 (11%)

Query: 1   MTPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHE-STFIPAYMSALTGSTPKRE 59
           MT  LRL   + K+  R     YYFR  +  +           F     +    +    E
Sbjct: 1   MTHDLRLAHNIYKDSKRG---TYYFRITYYDKTNKRQYITRKGFKQRKEAVKKCNEIMDE 57

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119
                +        L+ EY +       + + +       + ++      D  K+TT+ +
Sbjct: 58  LEGIGQLNRLPFDKLVEEYIEWYSARRKSSSVKALKTHTNNHLLPYFKSMDVFKMTTQDV 117

Query: 120 RSGVESRKHTPSSAIQFLTS---MRVLFKWAVRQEYVAINPCLSVERPKRKT-EGIRPWT 175
                 +     S          +  L   A++   +  N    V   + ++ + +  WT
Sbjct: 118 MKFQNKKLKEGHSGDYLKKMHVYLVSLLNHAMKFYDLKQNVASLVGNFEIESQKRLNYWT 177

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSI--------- 224
            E   +F    +   Q +L F+ L YSG R  +      + +   +    I         
Sbjct: 178 LEQFNEFYDALAT-QQQKLFFKLLFYSGARKGEIRALTWRDVNFDDEFIHINKTDYHGEV 236

Query: 225 KTQKTGTII-TVELPDGFMKLLAM--------TPIGKETFFINNDKQKMNATQFSIWFKA 275
              KT + I  + LP   M  +               +        +  + +    WF  
Sbjct: 237 TAPKTKSAIRDIYLPAHMMNDIKNYLNWYKENNIYKDDYVLFGTFFKAYSESTIDRWFTT 296

Query: 276 KATKAG---------VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
                               H +R   A++  + GA+   +    G    ++   Y + 
Sbjct: 297 ALKVLDNQLPDGQTFPRIVIHELRHSHASMLVNHGASIMVIAQRLGHADSNEV--YNRY 353


>gi|315171544|gb|EFU15561.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX1342]
          Length = 309

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 44/288 (15%), Positives = 91/288 (31%), Gaps = 44/288 (15%)

Query: 73  WLISEYRKSAHWGSL------AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
            L  EY   + W  L         S   +     ++   +     + +  +  +  +   
Sbjct: 9   QLFHEYF--SEWVELYKVGAIRDISLQKYYIAEQRLAELAPGLKVKHLDRQRYQQLLNDY 66

Query: 127 KHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV----ERPKRKTEGIRPWTKEDMQ 180
             T    + + F   ++     AV +  ++ NP   +    + P+ K        + ++Q
Sbjct: 67  ALTHERQTTMDFHHQLKGAILDAVDEGLISKNPTRKIVIKGKAPRPKKSKF--LNQFEVQ 124

Query: 181 QFKSFWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSIKTQKT--------- 229
                   G Q    +  LL   +GLR S++     +    +   I  +KT         
Sbjct: 125 ALLKELELGEQLNWDWFILLVVKTGLRFSEALALTPKDFDFSKQKITIEKTWNYKNPTGF 184

Query: 230 -----------GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKAT 278
                         I  +    F +L+   P  +  F      +  N+T  +   K    
Sbjct: 185 FQSTKNESSKRKVQIDWQTAMQFSQLIRNMPPMEPIFV---RGRVFNST-INSRLKVLCK 240

Query: 279 KAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
           +A +   + H +R   A++   AG +   +    G  ++    ETY  
Sbjct: 241 RAQIPVITVHSLRHTHASLLLFAGVSIASVATRLGHSSMTTTQETYLH 288


>gi|282858566|ref|ZP_06267736.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
 gi|282588657|gb|EFB93792.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
          Length = 380

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 41/258 (15%), Positives = 88/258 (34%), Gaps = 24/258 (9%)

Query: 86  SLAVNSRISF---ESYF-DQIIRKSGDFDYRKITTKHIRSGVESR-------KHTPSSAI 134
           S+   +   +   + +F + +  K G  D R ++        +            P++A 
Sbjct: 127 SVEAATLQKYNVCKKHFSNFLRDKYGRSDIR-LSELGYIVIHDFDIYLRTVVGQNPNTAT 185

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-WSEGSQP- 192
           + + + + +     +   +  +P L++ R   +       T E++ +  +  +  G    
Sbjct: 186 RMMKTFKTITILGRKLGVLHHDPFLNI-RFHMEPVNRGFLTDEEILKIANKDFGIGRLEL 244

Query: 193 -RLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
            R  F F  ++GL   D      +++           K QKT     V L D    ++A 
Sbjct: 245 VRDVFVFSCFTGLAYIDVYNLAPENIVTLNGKQWIMTKRQKTSVETNVLLLDIPKSIIA- 303

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAH 305
                +T+        +   + + + K  A   G+ K  + H  R   AT+S   G    
Sbjct: 304 -KYSGKTYRDGKLFPMLTNQKLNSYLKEIADICGIKKNLTFHLARHTFATMSLSKGVPIE 362

Query: 306 ELMATYGWKTVDQAETYT 323
            +    G   +   + Y 
Sbjct: 363 SVSKMLGHTNIKTTQIYA 380


>gi|255014968|ref|ZP_05287094.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_7]
          Length = 407

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 45/287 (15%), Positives = 90/287 (31%), Gaps = 35/287 (12%)

Query: 86  SLAVNSRISFESYFDQIIR------KSGDFDYRKITTKHIRSG----VESRKHTPSSAIQ 135
           +  V S  ++ + +  I R      K  D  +  +    I          R   P + I 
Sbjct: 127 NRTVGSLRAYSNAYSHIERFLQAQYKLSDIPFSALDRSFIDKYDLYLRTERNLAPGTIIN 186

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS---QP 192
               ++ +   A+    +  +P +  E P R     +  T E++ +  +           
Sbjct: 187 LTVQLKTIVGEAIADGIITASPFMGYE-PVRPKHVQKYLTAEELHRIMTTPLHRQPLYHV 245

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHL---QNNIFSIK--TQKTGTIITVELPDG----FMK 243
           R  F F  ++G+   D       +L   ++ I+ IK   QKT     + L D       K
Sbjct: 246 RDMFLFSCFTGIPYGDMRLLTKDNLCLAEDGIWWIKSARQKTKIEFEIPLLDLPLQILKK 305

Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATIS-ADA 300
                P  K              +  +++ K  A    +++    H  R   AT      
Sbjct: 306 YSGTAPGDKLLPM-------YCNSTLNLYLKEIARICHIDRPLVFHAGRHTYATEITLSH 358

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
           G     +    G   ++  + Y K  D       +++ ++  +    
Sbjct: 359 GVPLETVSRMLGHSQIETTQIYAKVTDEK--IDADTKALNRKISERF 403


>gi|253755098|ref|YP_003028238.1| integrase [Streptococcus suis BM407]
 gi|251817562|emb|CAZ55309.1| integrase [Streptococcus suis BM407]
          Length = 295

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 28/273 (10%), Positives = 88/273 (32%), Gaps = 30/273 (10%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLF 144
             L+ ++  ++++   Q    + +             G+       S+  + + S++V +
Sbjct: 17  KRLSTHTLRAYKNDLMQFYNSNNEC------VISYIEGLTHSNLKTSTLRRKIASLKVFY 70

Query: 145 KWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQQFKSFWSE-------------GS 190
            +   +  +  NP   +  + + +    +  + + ++   ++  +               
Sbjct: 71  GYLQLKNVITDNPFNQLRFQFRAEKTLPKTISHDSLKILYTYLQKKMISAKTIYQKQKAE 130

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDG-----FMKL 244
           +  L    LL +G+R S+ C   ++ +     +++   K      + + D          
Sbjct: 131 RNLLIVSLLLSTGIRISELCHIQIKDINLTEQTLQILGKGKKERMIFIGDERTFQLLKAY 190

Query: 245 LAMTPIGKETFFI--NNDKQKMNATQFSIWFK--AKATKAGVNKSAHGVRKFSATISADA 300
           +       + +     + ++ +      +  K     T+     + H  R   AT+  D 
Sbjct: 191 ITCYCNHTDDYLFPGKSLQKPLTEQSVRLLLKTAKTQTRLTTTITPHMFRHSFATMLLDN 250

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
                 +    G  ++   + YT  +   +  I
Sbjct: 251 DVDIRYIQQILGHSSISITQIYTHVSQSRQKEI 283


>gi|300861379|ref|ZP_07107465.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TUSoD Ef11]
 gi|300849171|gb|EFK76922.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TUSoD Ef11]
 gi|315145852|gb|EFT89868.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX2141]
          Length = 309

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 43/288 (14%), Positives = 91/288 (31%), Gaps = 44/288 (15%)

Query: 73  WLISEYRKSAHWGSL------AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
            L  EY   + W  L         S   +     ++   +     + +  +  +  +   
Sbjct: 9   QLFHEYF--SEWVELYKVGAIRDISLQKYYIAEQRLAELAPGLKVKHLDRQRYQQLLNDY 66

Query: 127 KHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV----ERPKRKTEGIRPWTKEDMQ 180
             T    + + F   ++     AV +  ++ NP   +    + P+ K        + ++Q
Sbjct: 67  ALTHERQTTMDFHHQLKGAILDAVDEGLISKNPTRKIVIKGKAPRPKKSKF--LNQFEVQ 124

Query: 181 QFKSFWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSIKTQKT--------- 229
                   G +    +  LL   +GLR S++     +    +   I  +KT         
Sbjct: 125 ALLKELELGERLNWDWFILLVVKTGLRFSEALALTPKDFDFSKQKITIEKTWNYKNPTGF 184

Query: 230 -----------GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKAT 278
                         I  +    F +L+   P  +  F      +  N+T  +   K    
Sbjct: 185 FQSTKNESSKRKVQIDWQTAMQFSQLIRNMPPMEPIFV---RGRVFNST-INSRLKVLCK 240

Query: 279 KAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
           +A +   + H +R   A++   AG +   +    G  ++    ETY  
Sbjct: 241 RAQIPVITVHSLRHTHASLLLFAGVSIASVATRLGHSSMTTTQETYLH 288


>gi|167724618|ref|ZP_02407854.1| site-specific recombinase, phage integrase family protein
           [Burkholderia pseudomallei DM98]
          Length = 228

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 31/215 (14%), Positives = 62/215 (28%), Gaps = 39/215 (18%)

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA------ 195
           ++F  AVR+     NP   +   K +T+  R  T +++   ++     +  + A      
Sbjct: 1   MIFAHAVRRGLRDRNPAREIGSAK-ETKRDRYITDDELDTVRAAIVASADDKTASARSFL 59

Query: 196 --FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT----GTIITVELPDGFMKLLAMTP 249
              +    +  R  D      Q + ++  S +  +T    G  + +E+     + L    
Sbjct: 60  CLIDLAYQTAQRIGDLLALNWQDVSDDGISFRPSQTVNRSGVRLLIEMTPDLQETLNRAR 119

Query: 250 IGK----ETFFINNDKQKMNATQFSIWFKAKATKA-------------------GVNKSA 286
            GK          +             +K    +A                    +    
Sbjct: 120 GGKIASIGPMICTHASGCYTYIGAYSAWKRACLRARSAYEKDWKKKGITPNPKYLIGMHF 179

Query: 287 HGVR-KFSATISADAGATAHELMATYGWKTVDQAE 320
           H +R K         GA A +  +  G  T     
Sbjct: 180 HDLRAKALTDPKRQQGAAAAQ--SLAGHTTESMTA 212


>gi|158312286|ref|YP_001504794.1| integrase family protein [Frankia sp. EAN1pec]
 gi|158107691|gb|ABW09888.1| integrase family protein [Frankia sp. EAN1pec]
          Length = 304

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 40/272 (14%), Positives = 86/272 (31%), Gaps = 20/272 (7%)

Query: 73  WLISEYRK-SAHWGSLAVNSRISFESYFDQIIRKSGDF-DYRKITTKHIRSGVESRKHTP 130
            L+ E+R        L+  S   +       +   G       +    + + + +     
Sbjct: 15  ALLVEFRGWLDRERGLSPVSVRCYAKQSKVFLAGIGGAGAVSGLDAGKVTAFMVAWTAGR 74

Query: 131 S--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK--RKTEGIRPWTKEDMQQFKSFW 186
           +  SA   +TS+R   ++A      A++   +V      R +   R     ++++  +  
Sbjct: 75  NTWSAKAMVTSLRAFLRFAHATGRTAVSLAGAVPAVASWRMSALPRGLKASEIERLLTGC 134

Query: 187 S----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII-TVELPDGF 241
                 G +       L   GLR +++    +  +      I     G+    + LP   
Sbjct: 135 DRDTAVGLRDYAVLSLLARLGLRSAEAAGLRLDDIDWRAGEIAVTGKGSRTERLPLPAPA 194

Query: 242 MKLLAMTPIGKE------TFFINNDK--QKMNATQFSIWFKAKATKAGVNKS-AHGVRKF 292
            + +A    G        + F+   +  + +              +AG+ +   H  R  
Sbjct: 195 GEAIAAWLTGGRPRCESRSVFVTVRRPYRPLTPESVRAVMGRACERAGLERRGTHRFRHA 254

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324
            AT    AGA+  E+      ++      Y K
Sbjct: 255 LATEMLRAGASLPEVGQVLRHRSQLSTSLYAK 286


>gi|323485863|ref|ZP_08091198.1| hypothetical protein HMPREF9474_02949 [Clostridium symbiosum
           WAL-14163]
 gi|323400851|gb|EGA93214.1| hypothetical protein HMPREF9474_02949 [Clostridium symbiosum
           WAL-14163]
          Length = 410

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 58/380 (15%), Positives = 107/380 (28%), Gaps = 75/380 (19%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
           E  R      Y  K   ++  L   ++S      +     +  K + I +      TL  
Sbjct: 17  ETQRADGSYMYVYKLGTKKKYL---YDSDLASLRVKEKQINKDKDDGIRTQEAMKLTLND 73

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQI--IRKSGDFDYRKITTKHIRSGVESRKHTPS 131
           +   Y    +   L  ++R ++   +D         +    +I    I +          
Sbjct: 74  MFKVYMN--NNIKLKPSTRANYLYLWDFYVKEEPFANMPLPQIHRSDILAFYTKLLKHGF 131

Query: 132 SAIQ---FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ-------- 180
           +        T +    + AV  +Y+  NP   + R K KT+G  P  K  +         
Sbjct: 132 AINSLESINTIVHPTLEMAVDDDYIRKNPSKGIYR-KLKTDGSAPKPKRRIALTKTQQQN 190

Query: 181 --QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-----------------NN- 220
             +F +     S        LL +G+R ++        +                  +  
Sbjct: 191 FLRFIAKSPTYSHWLPIMTVLLGTGMRVAECTGITKSDINLSENTISVNHNLIYRVIDGK 250

Query: 221 -IFSIKTQKT--GTIITVELPDGFMKLLAMT--------PIGKETF-------FINNDKQ 262
             F I T KT  GT I   L     + L +         P  +          F N    
Sbjct: 251 AGFHITTPKTESGTRIIPILYPEVAEQLRLQIETIDALYPDDQLVLGGVHGFVFRNRTGS 310

Query: 263 KMNATQFSIWFK--------AKATKAGV---------NKSAHGVRKFSATISADAGATAH 305
            M+A   +   +         +  +A +         + S H +R    T   ++     
Sbjct: 311 FMSAHNINRAIERISVTYNMEEMDQAELEDREPDLLPHFSVHSLRHTFCTRLCESTNDVK 370

Query: 306 ELMATYGWKTVDQA-ETYTK 324
            +    G        + YT 
Sbjct: 371 FIQQVMGHADFSTTMDIYTH 390


>gi|322516068|ref|ZP_08069005.1| phage integrase family prophage Sa05 [Streptococcus vestibularis
           ATCC 49124]
 gi|322125483|gb|EFX96829.1| phage integrase family prophage Sa05 [Streptococcus vestibularis
           ATCC 49124]
          Length = 388

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 52/301 (17%), Positives = 113/301 (37%), Gaps = 52/301 (17%)

Query: 87  LAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSS--------AIQFL 137
           + VN+R   +S  D  ++   G F   K+TT  I+S +    +  ++          +  
Sbjct: 85  VKVNTRKLQKSILDKHLLPLFGSFKLDKLTTPLIQSIMNKLANRTNTGEVGAYLHYDKIH 144

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERP----KRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
              + + ++ V  + +  NP  +V  P    K K   ++ +  ++++QF ++       +
Sbjct: 145 ALNKRILQYGVVLQVIPTNPASNVVLPRNTQKDKKAKVKHFNNDELKQFLTYLDSLDNTK 204

Query: 194 -------LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-------------GTII 233
                    ++FLL +G R +++       +  +   +   KT              +  
Sbjct: 205 YNTYYDITLYKFLLATGCRINEALALSWSDIDLDNSVVHITKTLNCEMKLNSPKSKSSYR 264

Query: 234 TVELPDGFMKLLAMTPIGK----------ETFFINNDKQKMNA-TQFSIWFKAKATKAGV 282
            +++    + +L      +          ET   +N  +      Q +   +A   KAGV
Sbjct: 265 DIDIDRQTVTMLKKYQRKQTQEAWKLGRTETVVFSNFIKAYPRINQLTKRLRAHFDKAGV 324

Query: 283 N-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRIS 340
           N    HG R   A++  ++G    EL    G   +    +TY+       L  +N+++ +
Sbjct: 325 NNIGFHGFRHTHASLLLNSGIPYKELQHRLGHSKLSMTMDTYSH------LSKENAKKAT 378

Query: 341 S 341
           S
Sbjct: 379 S 379


>gi|293391306|ref|ZP_06635640.1| integrase [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|290951840|gb|EFE01959.1| integrase [Aggregatibacter actinomycetemcomitans D7S-1]
          Length = 414

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 50/306 (16%), Positives = 101/306 (33%), Gaps = 28/306 (9%)

Query: 45  PAYMSALTGSTPKREYINSPRKKPT--------TLKWLISEYRKSAHWGSLAVNSRISFE 96
             Y+S L  +     Y     +            + W   EYRK+    + + N +    
Sbjct: 78  EEYLSLLAQNIDPAIYRQQQEQAKQNELNNTYEAVAWAWLEYRKTK--KNFSDNYQKDVI 135

Query: 97  SYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKHTPS--SAIQFLTSMRVLFKWAVRQEYV 153
           S  ++ ++   G     +IT        +  +         + +     +  +A+ ++ +
Sbjct: 136 SLINRCLLPHFGHLPISQITAPMALKAFKQYQDEGHLEKLKRTIQKHNEIMTYALHRDLI 195

Query: 154 AINPCLSV--ERPKRKTEGIRPWTKEDMQQF---KSFWSEGSQPRLAFEFLLYSGLRCSD 208
           + NP  ++  E      E  +    ED+ +F           Q R    + L +  R ++
Sbjct: 196 SFNPTANIAKEFDSPTVEHFKTLKPEDLSEFMSTLQNAQIHLQTRYLILWQLLTMTRPNE 255

Query: 209 SCRAGVQHLQNNIFSIK----TQKTGTIITVELPDGFMKLLAMTP--IGKETFFINNDKQ 262
           +  A    +              K G    + L    + LL       G +T+   + K 
Sbjct: 256 AATAKWADIDEKNRIWTIPAEQMKRGIEHRITLSRQALALLGQIKKLSGGKTYLFPSVKN 315

Query: 263 KMNA--TQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
             +   TQ +     +   AG    AHG+R  ++T   D G  +  +         D+ +
Sbjct: 316 PQSHVNTQTANAAIKRMGYAG-KLVAHGLRSIASTYLNDQGFNSDLIEVALSHLNSDRVK 374

Query: 321 T-YTKG 325
           T Y +G
Sbjct: 375 TAYDRG 380


>gi|289645149|ref|ZP_06477170.1| integrase family protein [Frankia symbiont of Datisca glomerata]
 gi|289505044|gb|EFD26122.1| integrase family protein [Frankia symbiont of Datisca glomerata]
          Length = 366

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 45/273 (16%), Positives = 85/273 (31%), Gaps = 35/273 (12%)

Query: 97  SYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVA 154
                ++ + G++   KI    +++ V        P +       +  + K AVR   + 
Sbjct: 84  RLRCHLLPQWGEWPLNKIGFLDVQAWVTRLAAKLSPQTVASCHGILFSIMKAAVRARLIP 143

Query: 155 INPCLSVERPKRKTEGI--RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRA 212
           +NPC  V  P R+         T+ ++   K       + R       Y+GLR  +    
Sbjct: 144 VNPCEGVRLPPRRKRATAETVITRAELTG-KLLPELPERYRALVLLAAYTGLRWGECVGL 202

Query: 213 GVQHLQNNIFSIKTQKTGTII-----------------TVELPDGFMKLLAM-----TPI 250
               +      +   +T   +                 TV +P   +  L        P 
Sbjct: 203 RWTRVDLTAAELTVVETAVEVSGKISVKPYPKTEAGRRTVPIPPLLVAYLRRHREIVPPA 262

Query: 251 GKETFFINNDKQKMNATQFSIWFKAKAT-KAGVN--KSAHGVRKFSATISADAGATAHEL 307
             +  F +     +  + F  +    A  KAG+    + H +R   AT     G   + +
Sbjct: 263 PDDLVFPDTVGHPLRRSNFRRYVWVPARGKAGLPTSLTFHALRHCYATWLISEGVPVNVV 322

Query: 308 MATYGWKTVDQA-ETYTKGA----DRIRLGIKN 335
               G +        YT       DR+R  + +
Sbjct: 323 QVALGHEHASTTLNRYTHRPKDYHDRLRAALTD 355


>gi|224482544|gb|ACN50128.1| integrase [Vibrio cholerae]
          Length = 361

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 52/336 (15%), Positives = 111/336 (33%), Gaps = 35/336 (10%)

Query: 21  IIYYF-----RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK---PTTLK 72
           + Y F     R   G    L        + +Y + L      + Y+   R K     + +
Sbjct: 5   VRYRFDARQQRVDIGTNPPLEPAEARNELDSYRAVLDQGRNPKLYLQQERAKYSANQSFE 64

Query: 73  WLISEYRKSAHWGSLAVNS-RISFESYFDQIIRKSGDFDYRKITTKHIRS-GVESRKHTP 130
            +  ++  SA    L   +      S    ++ + G +    I    +R+   E  + +P
Sbjct: 65  SIFRDWIDSAGKQGLKEKTWHYQKRSSEIYLLPRLGKYPLTDINELSLRNCLREVSESSP 124

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK---RKTEGIRPWTKEDMQ---QFKS 184
           S+  + ++ +   + W + ++ + IN    +   K   +K +  R     +++   ++  
Sbjct: 125 SNTERLVSVLHKFYDWLIDEQILEINAAAGITAKKVSGKKGKRTRVLNDNEIRILWRYLH 184

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN--------IFSIKTQKTGTIITVE 236
                 + R+  + LL  G R  +  + G  H                + +K G  I   
Sbjct: 185 ESKITEKNRIYIKLLLLLGGRKVELPQDGKHHFDLQCAMWTVPIEIRKQGEKIGAPIMRP 244

Query: 237 LPDGFMKLLA-MTPIGKETFFINNDKQK-MNATQF--------SIWFKAKATKAGVNKSA 286
           L    ++L+     + K T+    + Q+ +    F         IW +   +    + S 
Sbjct: 245 LIKPAIELIELAMQMSKSTYLFPANGQEELATNGFDTTIPNNVKIWARRSLSVEMEHWSM 304

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           H +R+   T  + A  T        G         Y
Sbjct: 305 HDLRRTMRTRMS-AITTQEVAELMIGHSKKGLDAIY 339


>gi|95928737|ref|ZP_01311483.1| phage integrase [Desulfuromonas acetoxidans DSM 684]
 gi|95135082|gb|EAT16735.1| phage integrase [Desulfuromonas acetoxidans DSM 684]
          Length = 328

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 44/250 (17%), Positives = 95/250 (38%), Gaps = 23/250 (9%)

Query: 96  ESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKHTPSSAIQF---LTSMRVLFKWAVRQ 150
           ++  + ++ +SG  +    ++ +K I   + +R+   +SA      L  +  L+K ++++
Sbjct: 84  KNRLEALLERSGWENKTLAQLRSKDIYDYMRNREQAGASANTIRLDLALLSRLYKHSIQK 143

Query: 151 EYVA--INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD 208
             +    NP  +V+RP   +        E+ ++     S     + A  F L + +R  +
Sbjct: 144 YGLEGLANPVKAVDRPSTASSARTR-RLEEGEEETLLKSAHDDFKPAIAFALETAMRREE 202

Query: 209 SCRAGVQHLQNN--IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM-- 264
                 Q++        +   K G+  TV L    + +L   P          D Q    
Sbjct: 203 IATLTWQNINLEKRTAHLPKTKNGSARTVPLSTAAIGILKALPRQ-------LDGQVFAL 255

Query: 265 NATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETY 322
              + +   +    +AG+ +   H +R  + +   + G     E+    G KT+     Y
Sbjct: 256 TKKRITDRMRTTVKRAGLKDLRFHDLRHEATSRFFERGTLDMMEISRITGHKTLSMLSRY 315

Query: 323 T--KGADRIR 330
           T  + AD  +
Sbjct: 316 THLRAADLAK 325


>gi|329935594|ref|ZP_08285404.1| putative phage integrase [Streptomyces griseoaurantiacus M045]
 gi|329304939|gb|EGG48809.1| putative phage integrase [Streptomyces griseoaurantiacus M045]
          Length = 408

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 38/249 (15%), Positives = 73/249 (29%), Gaps = 34/249 (13%)

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           +P         +R   + AVR+E +  N    V+    +    R  + E+ ++  +   +
Sbjct: 163 SPRMVQYLHAVLRNALQHAVREEMIQRNVAKLVQVQTPRYRVGRGLSAEEAKKLLAEVRD 222

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---------------NNIFSIKTQKTG-TI 232
             +   A+   LY GLR  +        +                +   ++   KT  + 
Sbjct: 223 -DRLSAAYVLALYLGLRRGELLGLHWADVDLEGGSLEIRTALQRVDGALALTAPKTRRSE 281

Query: 233 ITVELPDGFMKLLAMTPIGKET--------------FFINNDKQKMNATQFSIWFKAKAT 278
             V LP   +  L     G+                 F       +     +  F     
Sbjct: 282 RPVPLPRVCVDALRRHRAGQHAERVAAGERWRESGFVFTTRLGTAIEPRNLNRHFYPVRE 341

Query: 279 KAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGIKNSR 337
           + G+    H +R    T+    G   H +    G   +D     Y       +       
Sbjct: 342 RLGLEVRFHDLRHTCVTLLLGLGIPPHIVRDIVGHSALDVTMNIYAHADMTEKRA--ALD 399

Query: 338 RISSVVDSD 346
           R+ S++D D
Sbjct: 400 RLGSLLDDD 408


>gi|227543842|ref|ZP_03973891.1| transposon integrase [Lactobacillus reuteri CF48-3A]
 gi|300909102|ref|ZP_07126565.1| phage integrase family site-specific recombinase [Lactobacillus
           reuteri SD2112]
 gi|227186170|gb|EEI66241.1| transposon integrase [Lactobacillus reuteri CF48-3A]
 gi|300894509|gb|EFK87867.1| phage integrase family site-specific recombinase [Lactobacillus
           reuteri SD2112]
          Length = 410

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 50/313 (15%), Positives = 92/313 (29%), Gaps = 70/313 (22%)

Query: 85  GSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRSG----VESRKHTPSSAIQFLTS 139
             L  N+  +++  ++  +R   G +  R +    IR      V+ R    SS       
Sbjct: 83  KGLKSNTFNNYKYMYNHFVRNDLGQYKIRTLKVTDIRRFYNKLVDVRGLKVSSLDTIQLI 142

Query: 140 MRVLFKWAVRQEYVAINPC-LSVERPKR----KTEGIRPWTKEDMQQFKSFW---SEGSQ 191
           +  +   AV+ + V  N     +   KR     +   +  T E    F ++     +   
Sbjct: 143 IHQVLDLAVQDDLVRKNVSDNGLRELKRMRGIDSIPRKSLTIEQQNLFLNYLQNTDKYKH 202

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSI----------KTQKTGTII------ 233
               F  +L +GLR  +      + +   NN+  +          K+ KTG  I      
Sbjct: 203 WYPTFAVMLGTGLRVGELTGLRWEDIDFKNNLIKVNHTLVFYERSKSSKTGFGINTPKTK 262

Query: 234 ----TVELPDGFMKLLAMTPI---------------GKETFFINNDKQKMNATQFSIWFK 274
               T+ +     + L                     ++  F+N      N    +   K
Sbjct: 263 AGFRTIPMIKTVREALQKQQTYLQKEQIRSVDNIDGFRDFIFLNRFGHVQNQGPLNKALK 322

Query: 275 AK---ATKAGVNK-------------SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
                   A ++K             S H +R    T   ++G     +    G   +  
Sbjct: 323 RIIRDCNFAELDKNPSINNDCLLPNFSCHVLRHTFTTRLVESGMNVKVIQNVLGHSDIQT 382

Query: 319 A-ETYTKGADRIR 330
               Y   AD  R
Sbjct: 383 TLNIY---ADVTR 392


>gi|158312284|ref|YP_001504792.1| integrase family protein [Frankia sp. EAN1pec]
 gi|158107689|gb|ABW09886.1| integrase family protein [Frankia sp. EAN1pec]
          Length = 329

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 31/277 (11%), Positives = 79/277 (28%), Gaps = 38/277 (13%)

Query: 85  GSLAVNSRISFE---SYFDQIIRKSGDFDYRKITTKHIRSGV---------ESRKHTPSS 132
              + N+  ++           +         ++   + + +         E R +  ++
Sbjct: 20  KKASPNTVAAYRDTCRLLLAFAQSKTGKPPSSLSLADLNATLIGEFLHHLEEQRGNGTAT 79

Query: 133 AIQFLTSMRVLFKWAVRQE-----YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
               L ++  LF +A  +       ++    L++   +R+   +   T E++    +   
Sbjct: 80  RNARLAAIHSLFTYAAPRAPEHAAVISQ--VLAIPPRRRERAIVSYLTAEEIDALVAAPD 137

Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTG-TIITVELPDGF 241
                G + R      + +GLR S+      Q +       ++    G       L    
Sbjct: 138 RSTWHGRRDRSLLLLDVQTGLRVSELTGLNRQDIHLGAGPHVRCHGKGRKDRATPLTTQT 197

Query: 242 MKLLAM-----TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--------SAHG 288
           +K++       +P      F      +++              A            + H 
Sbjct: 198 VKVIRTWLAELSPDPTGPLFPTQPGGRLSRDAVERLVAKHTATAADTCPSIKEKHVTPHT 257

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           +R  +A     AG     +    G +  +  + Y   
Sbjct: 258 LRHSAAMTLLKAGVDTSVIALWLGHEGTETTQIYLHA 294


>gi|303326864|ref|ZP_07357306.1| site-specific recombinase, phage integrase family [Desulfovibrio
           sp. 3_1_syn3]
 gi|302862852|gb|EFL85784.1| site-specific recombinase, phage integrase family [Desulfovibrio
           sp. 3_1_syn3]
          Length = 448

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 49/348 (14%), Positives = 97/348 (27%), Gaps = 63/348 (18%)

Query: 50  ALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGD 108
           A              + +  T   L   Y+  A    ++     S E   D  I+   GD
Sbjct: 96  AEAARLEAERTAARAKLRSITFGELAELYKAWAKERRVSAG---SVEQVLDMHILPVLGD 152

Query: 109 FDYRKITTKHIRSGVESRKHT----------------PSSAIQFLTSMRVLFKWAVR--- 149
               +IT   + +  +                     P + +  L ++R +F +A+    
Sbjct: 153 RVAAEITPADVEALRKLVADKHPLTGRNKNTPGACLSPQTVLHVLKTVREVFNFALETPA 212

Query: 150 ------QEYVAINPC------LSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPR 193
                   +  +NP         +  PK     +R    +++    ++        +   
Sbjct: 213 PHEPGVMLFSGMNPAIISRRGRGIHVPKNDARRLRILNDKEITTLLAYRGRRKEAFADLH 272

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK---------TQKTGTIITVE----LPDG 240
                 L  G R  +      +       +++         T K G    +      P+ 
Sbjct: 273 DMILLSLDIGPRAGELVHIRRESCDPVTGAVRIYKGSRDNDTTKGGASRLLFAGQLFPEA 332

Query: 241 FMKLLAMT--PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---------AHGV 289
           +  L +    P      F     +  ++   +   +    K   N+           H +
Sbjct: 333 WEMLRSRLSQPGNGPYLFPGPGGKARDSNGLNRAMRRIMEKLKFNEGVDDPRNTVVWHTL 392

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
           R   AT   +AG   + L    G  +V   E Y    DR +     +R
Sbjct: 393 RHTYATKMLEAGTDIYTLKELMGHASVTTTEIYLHLCDRAKREQALAR 440


>gi|256380351|ref|YP_003104011.1| integrase family protein [Actinosynnema mirum DSM 43827]
 gi|255924654|gb|ACU40165.1| integrase family protein [Actinosynnema mirum DSM 43827]
          Length = 398

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 56/332 (16%), Positives = 93/332 (28%), Gaps = 56/332 (16%)

Query: 56  PKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKI 114
            +     SP       K     + KS    S    SR + +S  D  I    G+    KI
Sbjct: 69  KREGKYVSPSAGRRKFKEQAENWIKS---QSSDAASREAIQSRLDSHINPHFGNLPVGKI 125

Query: 115 TTKHIRSGVESRKHTPSSAIQ---FLTSMRVLFKWAVRQEYVAINPCLS--VERPKRKTE 169
               +R  +        S        T++  +   AV    +  NPC +  ++RP   + 
Sbjct: 126 KPATVRDWLGLLDAERLSENYKTVLFTTVSSVLDSAVEDRLIIENPCKAKTIKRPTSISP 185

Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-- 227
            I  W +E + + +   S   +  +        GLR  +        +      +  Q  
Sbjct: 186 DIAVWPEERVLELEG--SIEPRFAIVCPLGAGCGLRQGEILALSPDDVDEERMLLIVQRQ 243

Query: 228 -------------KTGTIITVELPDGFMKLLA-------------------MTPIGKETF 255
                        K G   TV L  G ++ +                      P      
Sbjct: 244 LRVVGRRLVFAPPKGGKRRTVPLASGVLRAIREHEKLFPSAEVTLPWKTPEGVPTTARLL 303

Query: 256 FINNDKQKMNATQF-SIWFKAKATKAGVNKS-----AHGVRKFSATISADAGATAHELMA 309
               + +      F  + +     +AG+         H +R F A+     G +  EL  
Sbjct: 304 ATGPNGRVYTGDLFHKVVWLGAFREAGLIYRNRADGMHALRHFYASTLLSRGVSVKELAE 363

Query: 310 TYGWKTVD-QAETYTKGA----DRIRLGIKNS 336
             G         TYT       +R R  I   
Sbjct: 364 YLGHSDPGFTLRTYTHLVPSSHERAREAINAV 395


>gi|221328640|ref|YP_002533482.1| Tyrosine integrase [Salmonella phage epsilon34]
 gi|193244708|gb|ACF16647.1| Tyrosine integrase [Salmonella phage epsilon34]
          Length = 387

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 37/214 (17%), Positives = 76/214 (35%), Gaps = 22/214 (10%)

Query: 131 SSAIQFLTSMRVLFKWA-VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
           S+  + L  M+ + + A    +++   P   ++ P  + + +R   KE+ ++      E 
Sbjct: 144 STKAKHLALMKAILRAAERDWKWLEKAPV--IKVPAVRNKRVRWLEKEEAKRLIDECPEP 201

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGFMKLL 245
            +  + F     +GLR S+      Q +         + +  K+   I V L D   K+L
Sbjct: 202 LKSVVKFALA--TGLRRSNIINMEWQQIDMQRRVAWVNPEDSKSNRAIGVALNDTACKVL 259

Query: 246 AMTPIGKETFFINNDKQKMNATQF------------SIWFKAKATKAGV-NKSAHGVRKF 292
                    +   + K+ +                    + A   +AG+ +   H +R  
Sbjct: 260 REQIGKHHKWVFVHTKEGIRPDGSKTPTIRKMRVDDQRAWNAACRRAGIEDFRFHDLRHT 319

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            A+    +G     L    GW+++D    Y   A
Sbjct: 320 WASWLIQSGVPLSVLQEMGGWESIDMVRRYAHLA 353


>gi|146283670|ref|YP_001173823.1| integrase/recombinase XerC, putative [Pseudomonas stutzeri A1501]
 gi|145571875|gb|ABP80981.1| integrase/recombinase XerC, putative [Pseudomonas stutzeri A1501]
          Length = 339

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 50/303 (16%), Positives = 91/303 (30%), Gaps = 53/303 (17%)

Query: 72  KWLISEYRKSAHWGSL------AVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSG 122
           K ++S Y     W  L      A  +  ++             SG         +     
Sbjct: 8   KQVLSRYSSVQAWLELLGNLGRAPATLDAYGRALAHYLLHCEGSGLKPESATFEQVTLYI 67

Query: 123 VESR-KHTPSSAI----QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT--------- 168
            E       + A     Q LT++R+ +   V Q     NP   V R +            
Sbjct: 68  RELLPGAKSAVANSTLHQRLTAIRLWYDHLVFQGLCEHNP---VPRGQHGRLAQVPGHGG 124

Query: 169 ----------EGIRPWTKEDMQQFKSFWSEGS-QPRLAFEFLLYSGLRCSDSCRAGVQHL 217
                     +     T E  + F S  +  S + RL      +  LR ++     ++ L
Sbjct: 125 FVRGLLPRLIKLPDIPTDEQWRHFLSIAARSSIRDRLMLSLAYFGALRRAELVALRIEDL 184

Query: 218 QN--NIFSIKTQKTGTIIT------VELPDGFMKLLAMTPIG---KETFFIN----NDKQ 262
                + S++ + T    +       ++    ++ L         + + F +    N   
Sbjct: 185 DVAHRLISVRAETTKGKRSRVVCYSPDIAPVLIEHLHALRGAGWMRGSLFRSASDRNRGS 244

Query: 263 KMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
            ++   +S   +  A +A + + S H  R    T  A AG   HEL    G +       
Sbjct: 245 PLSRWAWSKTVEGWAKEAKLSHLSTHTFRHLRLTHLARAGWKLHELTTYAGHRDPKTTLI 304

Query: 322 YTK 324
           Y  
Sbjct: 305 YLH 307


>gi|325977283|ref|YP_004286999.1| site-specific recombinase, phage integrase family [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
 gi|325177211|emb|CBZ47255.1| site-specific recombinase, phage integrase family [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
          Length = 378

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 36/298 (12%), Positives = 94/298 (31%), Gaps = 50/298 (16%)

Query: 90  NSR-ISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----------SRKHTPSSAIQFLT 138
           N++  ++  +      K    D  K+         E           +  +P++  + + 
Sbjct: 85  NTQENNYNRHIKHYFEKV--TDVSKLQYDDFYDFREHLIGTISKNTKKPLSPNTINKIMI 142

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-SEGSQPRLAFE 197
            ++ +    VR+ +   NP   +++       +  WT  + + F   +  E    +L F+
Sbjct: 143 LLKKIMDIGVRKGFYPSNPVTLIKKLPIDKPKLNYWTVSEFKDFLELFTPEEYHYQLLFK 202

Query: 198 FLLYSGLRCSDSCRAGVQHLQ---------------NNIFSIKTQKTGTIIT-VELPDGF 241
            L ++G+R  +        +                  +  I T KT   I  + +    
Sbjct: 203 VLYFTGMRLGEVLALNWNDIDFSRNTIAVSKSVYFKKGVSYISTPKTKASIRQIVINAKL 262

Query: 242 MKLLAMTPIGKETFFINNDKQ--------------KMNATQFSIWFKAKATK-AGVNK-S 285
           M  L +    K+   +                    +        ++    +   + K  
Sbjct: 263 MNELEVWQ-HKQYELLRQFSNDDCSDLQLFQNSPIPITKDSIEKHYRGLLKRNPKLKKIR 321

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSV 342
            H +R   A++  + G     +    G  ++    +TY+      ++ +  + ++ S+
Sbjct: 322 IHDLRHSHASLLINQGEDYLVVKERLGHASITTTIDTYSHLYPSKQVAL--ADKLDSL 377


>gi|303235718|ref|ZP_07322325.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
 gi|302484165|gb|EFL47153.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
          Length = 406

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 44/254 (17%), Positives = 88/254 (34%), Gaps = 23/254 (9%)

Query: 105 KSGDFDYRKITTKHIRSG----VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
           K  D     +    I          RK   +S    L++++ +   AV++ ++ ++P + 
Sbjct: 153 KLSDIPLVGLDKTFIEGYEYYLTVDRKLKRASISSTLSALKTIVSMAVKKGFLDLDPFIG 212

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSF---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217
               K K    R  T+E++Q+  S    W      R  F F  ++GL  SD      +++
Sbjct: 213 YSYEKAKGT-PRNITQEELQKIISLHIEWDNYRIVRDLFVFSCFTGLAISDVRNLKEENI 271

Query: 218 QNNIFSI----KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF 273
                 +    K  KT T   V++      ++      +  +  +               
Sbjct: 272 VCEEGKLCIKGKRVKTKTPYRVQILPPAKAIMERYRGKRAGYVFDVP----TVDIVHNAM 327

Query: 274 KAKATKAGVN--KSAHGVRKFSA-TISADAGATAHELMATYGWKTVDQAETYTK-GADRI 329
                  G+    + H  R   A  I+  AG     +    G   +   + Y    ++RI
Sbjct: 328 HHIQRNIGMKTPLTFHMARHTFASVITLSAGVPIETVSGMLGHTNLRTTQVYAAVNSERI 387

Query: 330 RLGIKNSRRISSVV 343
           R   ++ RR+ + +
Sbjct: 388 R---QDMRRVQTCI 398


>gi|255527691|ref|ZP_05394548.1| integrase family protein [Clostridium carboxidivorans P7]
 gi|255508604|gb|EET84987.1| integrase family protein [Clostridium carboxidivorans P7]
          Length = 215

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 66/196 (33%), Gaps = 18/196 (9%)

Query: 140 MRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEF 198
           + +LF +  + +  +  +P   ++    + E  + +    ++ F+   S   +    F  
Sbjct: 3   ISILFNFVQKGDILMTSSPENRIKYF-TQNEAAKLFNA--IESFQGIHSI--RDLAIFRV 57

Query: 199 LLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTGT----IITVELPDGFMKLLA--MTPI 250
               GLR S+     ++           K  K  +     + ++      K +A      
Sbjct: 58  AYRCGLRASEIALIKLEDYNASKGELYCKRLKGSSNNTIRLDIKTKSVLDKYIAKYRILS 117

Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGV----NKSAHGVRKFSATISADAGATAHE 306
                F++   + ++        K   + A +        H ++  +A   A++G    E
Sbjct: 118 ESSPLFVSQQNKPISRQTLDYLIKKYCSLANISDKTKYHFHSLKHTTAVHLAESGMDIKE 177

Query: 307 LMATYGWKTVDQAETY 322
           L    G K+V   E Y
Sbjct: 178 LQWWLGHKSVSNTEIY 193


>gi|226349711|ref|YP_002776825.1| putative transposase for insertion sequence element [Rhodococcus
           opacus B4]
 gi|226245626|dbj|BAH55973.1| putative transposase for insertion sequence element [Rhodococcus
           opacus B4]
          Length = 535

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 47/315 (14%), Positives = 88/315 (27%), Gaps = 52/315 (16%)

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLA-----VNSRISFESYFDQIIRKSGDFDYRKITTKH 118
           P   P  ++ +I  Y +      L       N+R +   + + +              + 
Sbjct: 97  PEPCPPKIRAVIERYLQLRLDAKLDRPQTVHNARQALRRFVNWLGENHPQVSSFAQVDRA 156

Query: 119 IRSGVESRKHT--------PSSAIQFLTSMRVLFKWAVR---QEYVAINPCLSV----ER 163
                     T        P +       +  +  +        +  + P   +    + 
Sbjct: 157 TIEEYMRWLPTCPSQHTGLPLATTTVKHELNAIAGFCRDTAVWGWAEV-PGRPLLTPRDT 215

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL--YSGLRCSDSCRAGVQHLQNN- 220
           P+R     R   + ++    +   + + P      LL  +SG R  +  R     L    
Sbjct: 216 PRRPESIPRYLPQHELDAIMTAVDDLADPLQRAALLLLRWSGARRDEIRRLTWDCLDTYP 275

Query: 221 ----IFSIKTQKTGTIITVELPDGFMKLLA-----------------MTPIGKETFFINN 259
                  I   K  T + V L       L                  +T    +  F+  
Sbjct: 276 GGHPRLRIPVGKGRTELIVPLHPDAATALEHATSLARAQRSIARIDEVTGRRVDYVFVRR 335

Query: 260 DKQKMNATQFSIWFKAKATKAGV-------NKSAHGVRKFSATISADAGATAHELMATYG 312
            K     T F   F+      G+         SAH  R    T  A+ GA    +MA  G
Sbjct: 336 GKLLSGKTLFDEAFRTVCAATGLVDDRGSPTVSAHRFRHTLGTQLAEGGARIQTIMAILG 395

Query: 313 WKTVDQAETYTKGAD 327
            ++   +  Y++ +D
Sbjct: 396 HRSATMSMIYSRISD 410


>gi|134281384|ref|ZP_01768092.1| integrase/recombinase XerD, putative [Burkholderia pseudomallei
           305]
 gi|134247051|gb|EBA47137.1| integrase/recombinase XerD, putative [Burkholderia pseudomallei
           305]
          Length = 318

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 46/283 (16%), Positives = 82/283 (28%), Gaps = 34/283 (12%)

Query: 89  VNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRVL 143
            ++R ++    +         G      +   H+ + VE +  T    +  Q L ++R L
Sbjct: 38  PHTRRAYARAAEDFFAWCANMGVTSIVAVQPLHVAAWVELQTQTLSAPTVKQRLAAIRHL 97

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED------MQQFKSFWSEGSQPRLAFE 197
           F W V  + V +NP  SV  P   ++  +    +       +         G + R    
Sbjct: 98  FDWLVTGQVVPVNPAASVRGPSHSSKVGKTPVLDATEARHLLDAIDVSTPAGLRDRALIA 157

Query: 198 FLLYSGLRCSDSCRAGVQHL--QNNIFSIK-TQKTGTIITVELPDGFMKLLAMTPIGKET 254
            +++S  R   +    V  +  QN    ++  +K G    +         L     G   
Sbjct: 158 LMVFSFARIGAALAMRVDDVYVQNRRLWVRLREKGGKRHEMPCHHTLEAYLHAYLDGTG- 216

Query: 255 FFINNDKQKMNAT------------------QFSIWFKAKATKAGVNKSAHGVRKFSATI 296
              N  K  +  T                     +  +A A         H  R    T 
Sbjct: 217 -LANESKGPLFRTIARGTGQLSTTPLPQANAYAMVRRRAAAAGIATKIGNHTFRATGITA 275

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
               G T     A     +    + Y +  D I L      R+
Sbjct: 276 YLKNGGTIENAAAMANHASTRTTQLYDRRRDDISLDEVERIRV 318


>gi|126659715|ref|ZP_01730843.1| Tn554-related, transposase A [Cyanothece sp. CCY0110]
 gi|126618963|gb|EAZ89704.1| Tn554-related, transposase A [Cyanothece sp. CCY0110]
          Length = 370

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 51/316 (16%), Positives = 98/316 (31%), Gaps = 69/316 (21%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
            +WL  EY KS  W  + +N    F +++       G+ +      + I S     K +P
Sbjct: 59  WQWL--EY-KSLDWQEVGLNELADFVNWYLL----GGEVEVISEDVREIMS-----KRSP 106

Query: 131 SSAIQFLTSMRVLFK-------------------WAVR----QEYVAINPCLSVERPKRK 167
            +    +T+++  ++                   W  R    +  V   P    +R K K
Sbjct: 107 RTVNLAITAVQGFYEFHTVEGRVDEKHFTKLAHGWGKRGGFLRGIVKSTPDKR-KRIKVK 165

Query: 168 TEGIRP--WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN----NI 221
                P   T E + Q         + RL    L  +G+R  +     +  + +      
Sbjct: 166 EPKNFPGCLTDEQVTQLADACYSY-RDRLIVMLLRETGVRRGELLGLHLVDVADFDSRGR 224

Query: 222 FSIKTQ--------KTGTIITVEL---PDGFMKL----------LAMTPIGKETFFINND 260
             I  +          GT   + +    D   +                +     F+N +
Sbjct: 225 IRIVRRDNNPNSATAKGTEREIPIIHNRDAVKETFHAYLLEEYPPEAEKLEHGMLFVNLE 284

Query: 261 K----QKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTV 316
                + M++ + +  F     + G+    H  R   AT    AG     +    G K++
Sbjct: 285 GEYIGKPMSSARLNSLFYQLEERTGIKAHPHLFRHTFATRMLQAGYLDQYVQQLLGHKSI 344

Query: 317 DQAE-TYTKGADRIRL 331
              +  Y+   D + L
Sbjct: 345 ATTKDIYSHVLDEMSL 360


>gi|332110027|gb|EGJ10655.1| integrase/recombinase [Rubrivivax benzoatilyticus JA2]
          Length = 297

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 32/216 (14%), Positives = 55/216 (25%), Gaps = 51/216 (23%)

Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217
              + RP  K       +  ++    +        RL  E L  +GLR +++ +  V+ +
Sbjct: 64  MDEIGRPVPKRRLPVVLSPAEVAAVLARLDGTC--RLLGELLYGTGLRITEALQLRVKDV 121

Query: 218 Q--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN---------------- 259
                   ++  K G    V LP      L          +  +                
Sbjct: 122 DFAQRAILVRAGKGGKDRVVMLPAALEAPLRDQLRAVHAVWAEDAAAGRAGVQLPDALER 181

Query: 260 -----------------------------DKQKMNATQFSIWFKAKATKAGVNK--SAHG 288
                                         +  +    F   F      AGV K  + H 
Sbjct: 182 KYPRAGASWAWFWVFPQGRHSADPRSGVVRRHHLVPGSFQRAFARALQAAGVAKPATPHT 241

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +R   AT    +G+    +    G   V     YT 
Sbjct: 242 LRHSFATHLLQSGSDIRTVQELLGHADVATTMIYTH 277


>gi|260662343|ref|ZP_05863238.1| site-specific recombinase [Lactobacillus fermentum 28-3-CHN]
 gi|260553034|gb|EEX25977.1| site-specific recombinase [Lactobacillus fermentum 28-3-CHN]
          Length = 394

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 54/355 (15%), Positives = 110/355 (30%), Gaps = 45/355 (12%)

Query: 26  RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG 85
           R G  R+ R       T        +       ++       P T K    +Y     + 
Sbjct: 49  RTGKRRQKRCSGFKTKTLAKEAYRKMVAQVEDEQF-----NSPITFKEFCGKYF----FP 99

Query: 86  SLAVNSRIS----FESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFL--TS 139
                 +       +   ++   +       KIT   ++          ++    +  T 
Sbjct: 100 WYKFTVQEQTYEHRKGMVERSFNQFDSMKLSKITAFDVQKWQLGYLEDHANGTTRVAHTM 159

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR----LA 195
           +  +F+ A+    +  NP   V   KR  + +  WTK+  Q+     S+ +       + 
Sbjct: 160 LGKIFERAILMSLMRENPAKIVGNVKRSQDEVEFWTKDQFQKVIDQTSKDTYTHRFDFII 219

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSI--------------KTQKTGTIITVELP--- 238
             FL  +G+R  ++     + +     +I              K  KT    ++ +    
Sbjct: 220 LWFLFMTGMRSGEAKALTWKDVDLKAGTIDINKSLLYKSVNNYKLGKTKNRQSMRVISID 279

Query: 239 ----DGFMKLL-AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKF 292
               D   +       + +  F ++ D   +N+T  +         A V   +AH +R  
Sbjct: 280 PQTIDYLEEWYEDQRLMTRSEFVLSQDGAPLNSTYINDIVHDYGDLAKVPTVTAHALRHS 339

Query: 293 SATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVVDSD 346
            A++    G     +    G K V    E Y     +    I+ S+R+  +V   
Sbjct: 340 HASLLISLGENPLVIRDRLGHKDVRTTLEIYGHLYPKS--DIEASKRLEGLVTVP 392


>gi|149918976|ref|ZP_01907461.1| Phage integrase [Plesiocystis pacifica SIR-1]
 gi|149820129|gb|EDM79548.1| Phage integrase [Plesiocystis pacifica SIR-1]
          Length = 398

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 44/348 (12%), Positives = 95/348 (27%), Gaps = 39/348 (11%)

Query: 13  KERTRHGK--IIYYFR----KGHGRRIRLPYPH---ESTFIPAYMSALTGSTPKREYINS 63
           K R + G+    +          GR++ +              Y   L       ++   
Sbjct: 7   KWRDKQGRQHERWMVHIEHTWPDGRKLTIRKVSPVQTKRGAERYERELRKQLFTGQWEEG 66

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSG 122
            +++  TL+  + E+       +         E      ++   G     KI  + I   
Sbjct: 67  DKQQTPTLQGFVEEFLAYQRTIN-KPAVIRRKEGILRLHLLPAFGRHRLDKIDERMIDQY 125

Query: 123 VESRKHT---------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
              R  T         P +  Q L  +  +F  A + + V   P   +   K++      
Sbjct: 126 KVDRLATLTRTGSPFQPQTVNQHLKVLGRIFTVAKKWKLVREVP--EIVLLKQRKSDFDF 183

Query: 174 WTKEDMQQFKSFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQ---HLQNNIFSIKTQ-- 227
              ++ + F +  +E            + +GLR  +      +    LQ    S+     
Sbjct: 184 LDFDETEAFLTGTAEHLPDWHTYMVVAVRTGLRVGEMIALRWREDIDLQRGRISVNQSWS 243

Query: 228 --------KTGTIITVELPDGFMKLLAMTPI--GKETFFINNDKQKMNATQFSIWFKAKA 277
                   K+     + L       L    +    +  F        +A           
Sbjct: 244 VENGFTSTKSDKRRELPLTWDARDALEAQRVRVQGKLVFPREGAPTHSAGTVQYAIDKIT 303

Query: 278 TKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
               + +   H +R   A+ +   G    ++    G +++     Y  
Sbjct: 304 EALEMRHLHNHVLRHTFASHAVMRGVPMRQVQEWLGHQSITTTMRYAH 351


>gi|38637723|ref|NP_942697.1| putative integrase/recombinase [Ralstonia eutropha H16]
 gi|32527061|gb|AAP85811.1| putative integrase/recombinase [Ralstonia eutropha H16]
          Length = 336

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 41/308 (13%), Positives = 96/308 (31%), Gaps = 40/308 (12%)

Query: 67  KPTTLKWLISEYRKS--AHWGSLAVNSRISFESYFDQIIR--------KSGDFDYRKITT 116
           KPT    L++ +     A   +L+ N+  ++   F  ++R                +I  
Sbjct: 2   KPTDFSMLVTSFLTHHLAAQRNLSPNTIKAYRDVFTLLLRYCRDVRGIALERLSLAQIDV 61

Query: 117 KHIRSGVESRKHTP----SSAIQFLTSMRVLFKWA---VRQEYVAINPCLSVERPKRKTE 169
             + + ++   +      S+    L ++   F++    V +  +     L++   ++   
Sbjct: 62  GLVEAFLDHLANDRHVSVSTQNHRLAALHAFFRYVQSEVPERLLQCQQVLAIPLRRQPRA 121

Query: 170 GIRPWTKEDMQQFKS----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSI 224
            +    KE + Q  +      SEG +  +    L  +G R  +        ++ +    +
Sbjct: 122 SVGYLPKEYLAQLLAQPDLRTSEGCRDAVMLSVLYDTGARVQELIDLNAGDVRLDPPAQV 181

Query: 225 KTQKTG-TIITVELPDGFMKLL---------AMTPIGKETFFINNDKQKMNATQFSIWFK 274
           +    G     V L D  ++LL                +  F N    +++ +      +
Sbjct: 182 RLMGKGRKPRAVPLMDSTVELLLQYRRDNHLDRPEYADKPLFQNRQGTRLSRSGVRYLLQ 241

Query: 275 AKATKAGVNK-------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG-A 326
                   +        S H +R         +G     +    G   V   E Y +   
Sbjct: 242 KYVIPVRRSHPDFTQRVSPHSLRHTKGMHLLQSGVPLEIIRDFLGHVDVKTTEIYARANL 301

Query: 327 DRIRLGIK 334
           +  R  ++
Sbjct: 302 EMKRKALE 309


>gi|71909039|ref|YP_286626.1| integron integrase [Dechloromonas aromatica RCB]
 gi|71848660|gb|AAZ48156.1| Integron integrase [Dechloromonas aromatica RCB]
          Length = 327

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 38/310 (12%), Positives = 87/310 (28%), Gaps = 62/310 (20%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           L+ + R        ++ +   +  +  + I        R++    + + +         A
Sbjct: 14  LLDQVRDKLRLKHYSIRTETQYVQWIRRFILFHDKRHPREMGAGEVEAFLTHLAVEGRVA 73

Query: 134 ----IQFLTSMRVLFK--WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
                Q L+++  L++    ++  ++       V R K+        T++++       S
Sbjct: 74  ASTQNQALSALLFLYRDVLGIQLPWLDQ-----VVRAKQPQRLPVVLTRQEIAALLDRMS 128

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELP----DGF 241
            G    +A   L  +G+R  +  R  V+ +        ++  K        LP    +  
Sbjct: 129 -GLHGLMAR-LLYGTGMRLMECVRLRVKDVDFERAEIVVRDGKGAKDRVTMLPRTLIEPL 186

Query: 242 MKLLA--------MTPIGKETFFI---------------------------------NND 260
              L             GK + ++                                    
Sbjct: 187 QDHLRWRRTCYEDDLARGKASVYLPNALDRKYPNAETDWAWQYIFPAAGYSIDPRSGVER 246

Query: 261 KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           +  ++        K     +G+ K  + H  R   AT    +G     +    G   V  
Sbjct: 247 RHHLDEKALQRAVKKALQASGIAKLATPHTFRHSFATHLLQSGYDIRTVQELLGHADVTT 306

Query: 319 AETYTKGADR 328
              YT   ++
Sbjct: 307 TMIYTHVLNK 316


>gi|295086881|emb|CBK68404.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A]
          Length = 411

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 45/272 (16%), Positives = 99/272 (36%), Gaps = 29/272 (10%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQ------IIRKSGDFDYRKITTK---HIRSGVESR 126
            +Y K    G  A  + + +++ +        I  +  D   +++T          + + 
Sbjct: 118 EDYEKQVEAGMKAKGTLLKYKTVYKHLQEFLSIRYRVKDIALKELTPAFISDFEMFLRTD 177

Query: 127 KHTPSSAIQFLTS-MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           KH  ++ +      +R +   A+  E++  +P    E  K +T      TKE+++     
Sbjct: 178 KHCCTNTVWLYVCPLRTMVFIAINNEWLTRDPFREYEIKKEET-VRSFLTKEEIRLLMEG 236

Query: 186 WSEGSQPRLAFEFLLY---SGLRCSDSCRAGVQHLQN-----NIFSIKTQKTGTIITVEL 237
             + ++  L  +  L+   +GL  +D      +++          +I  QKTG +  + L
Sbjct: 237 RLKNAKQELYRDLYLFCAFTGLSFADMRNLTEENIHTYFDEHEWININRQKTGVVSNIRL 296

Query: 238 PDGFMKLLA--MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFS 293
            D   +++       G    F                 ++ A + G+ K  + H  R  +
Sbjct: 297 LDIAKRIIDKYRGLCGNGRIFPVPH-----YNTCLAGIRSVAKRCGITKHITWHQSRHTA 351

Query: 294 AT-ISADAGATAHELMATYGWKTVDQAETYTK 324
           AT +    G     + +  G K++   + Y K
Sbjct: 352 ATTVFLSNGVPIETVSSMLGHKSIKTTQIYAK 383


>gi|291294978|ref|YP_003506376.1| integrase family protein [Meiothermus ruber DSM 1279]
 gi|290469937|gb|ADD27356.1| integrase family protein [Meiothermus ruber DSM 1279]
          Length = 251

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 29/180 (16%), Positives = 62/180 (34%), Gaps = 12/180 (6%)

Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL----YSGLRCSDSCRAG 213
            L +  P  +   +   + E + +        +  +  +  +L    Y+G R S+     
Sbjct: 54  MLELAPPPARRRVVERLSPEAVSRLLEAAYRLNPRKPVYGLMLKTLFYTGCRVSEFVFLR 113

Query: 214 VQHLQNNI----FSIKTQKTGTIITVELPDGFMKLLAM--TPIGKETFFINNDKQKMNAT 267
            Q L  +       +   K  ++  V +     + L +      +   F +N  Q+ +  
Sbjct: 114 AQDLHLDGEAPHLYVHKAKKDSVRYVPILPALAQELRVHLAGRTRGYLFESNRHQRYSPR 173

Query: 268 QFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
                 +A A +AG+ +    H +R   A I  D G    +L    G + +   + Y + 
Sbjct: 174 AVQKLIQAAAKEAGLERRVYPHLLRHSVAQILLDRGMPLEQLQKFLGHRDLKTTQIYAES 233


>gi|227553215|ref|ZP_03983264.1| phage integrase family site specific recombinase [Enterococcus
           faecalis HH22]
 gi|227177581|gb|EEI58553.1| phage integrase family site specific recombinase [Enterococcus
           faecalis HH22]
          Length = 408

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 63/409 (15%), Positives = 127/409 (31%), Gaps = 86/409 (21%)

Query: 13  KERTRHGKIIY-YF----RK-GHGRRIRLPYPHESTFIPAYMSA--LTGSTPKREYINSP 64
             + ++G+  + YF    R  G GR+ ++      T   A  +A  + G     E++   
Sbjct: 6   SYKLKNGQERWEYFVSNGRNNGTGRQQKIHKRGFRTHKEALKAAKIIEGQIASEEFVK-E 64

Query: 65  RKKPTTLKW----LISEYRKSAHWGSLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHI 119
             +  T+       I+ Y+      ++   SRI +       I    G++   K      
Sbjct: 65  NSQKMTISKFMNIWINAYKN-----NVKEGSRIVYRDAIRMYIDPYIGNYQLNKYKPADH 119

Query: 120 RSGVESR-------KHTPSSAIQFLT----SMRVLFKWAVRQEYVAINPCLSVERP---- 164
           +  + S        K+    +   +     ++   FK A +  YV  NP   VE P    
Sbjct: 120 QKFINSLFTNKELGKNKNGLSYNTVKIVNAALSNAFKKAQKLGYVKSNPTYLVEFPLDKV 179

Query: 165 -----KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HL 217
                K K        +E++    +   +     + F  +   GLR  +           
Sbjct: 180 KEKTNKEKKLEFYTLEQENLFLDTARNFDDFMWYVFFLIIFDLGLRKGEVMALRWFNFDF 239

Query: 218 QNNIFSI-------------------------KTQKTGTIITVELPDGFM-------KLL 245
           ++NI +                          ++ K    +   + + +         +L
Sbjct: 240 RDNILTFDKQRLYRKEQPGQVILDDVKTDAGKRSLKMTNRVRNSVLELYSINYDLTSNVL 299

Query: 246 AMTPIGKETFFINNDKQ----KMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADA 300
            MT   ++  FIN+  +     +        +     KA + K   H  R  +A     A
Sbjct: 300 PMTNSNQDFLFINHRGKNVGLPIRQRSVDTAWHRIIQKANLPKIRIHDGRHTNAARLRQA 359

Query: 301 GATAHELMATYGWKTVDQAETYT--------KGADRIRLGIKNSRRISS 341
           G    ++    G K V   E Y         +  +++ L     ++  +
Sbjct: 360 GVPLEDIKDMLGHKNVKTTEIYAHVSPEVKERAVNKLELYQMQHKKSGN 408


>gi|197302720|ref|ZP_03167774.1| hypothetical protein RUMLAC_01450 [Ruminococcus lactaris ATCC
           29176]
 gi|197298302|gb|EDY32848.1| hypothetical protein RUMLAC_01450 [Ruminococcus lactaris ATCC
           29176]
          Length = 396

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 47/348 (13%), Positives = 111/348 (31%), Gaps = 51/348 (14%)

Query: 15  RTRHGKIIYYFRKGHG---------RRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
             +     YYFR   G         ++ R  +  +      Y   +  ST +     + +
Sbjct: 6   IKKADNGTYYFRANLGYNPITGKQIQKYRSGFRTKKEAKEEYSKLVLASTEEL----TTK 61

Query: 66  KKPTTLKWLISE----YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121
           K   + +  I E    + K+     +  ++ ++  +   +        +  +I   H+++
Sbjct: 62  KDGVSFQQFIEETYLPWYKT----QVKESTYLNRATTIKKHFSYFYKMETDEIEPIHVQN 117

Query: 122 GVESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
                    +P+        + + F  A+       NP   +   K K   +  WT E+ 
Sbjct: 118 WQLKLAKDFSPNYIRIVQGMLSIAFDRAIVLGIAKKNPSRMIGNIKSKKTKVDFWTLEEF 177

Query: 180 QQFKS-FWSEGSQPR---LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------ 229
           Q+  S    +        ++F  L  +G+R  ++       +      +   KT      
Sbjct: 178 QKVISLLCKKDYYEHYLFISFWLLFMTGMRIGEASALHWSDIDFETGLLSITKTLYYRTM 237

Query: 230 -----------GTIITVEL-PDGFMKLLAMTPIGKET-----FFINNDKQKMNATQFSIW 272
                       +I T+ +  D   +L A   + ++        ++ +    + T     
Sbjct: 238 TDYKFVEPKTQASIRTIYIDSDTLNELKAWQSVQQQVLPDCPLVLSYNGTPTSKTTLPRA 297

Query: 273 FKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
            +  +  AGV++   H +R   A++    G     +    G + +   
Sbjct: 298 LEKLSNLAGVHRIKIHALRHSHASLLISMGENPLLIKERLGHEKIQTT 345


>gi|306817826|ref|ZP_07451565.1| phage integrase family protein [Mobiluncus mulieris ATCC 35239]
 gi|304649305|gb|EFM46591.1| phage integrase family protein [Mobiluncus mulieris ATCC 35239]
          Length = 368

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 51/352 (14%), Positives = 98/352 (27%), Gaps = 48/352 (13%)

Query: 10  FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALT---GSTPKREYINSPRK 66
            +T+ R + G+++Y  R   G +        +     Y   L    G T  R  ++S   
Sbjct: 3   GITEIRHKDGRVVYRVRFRDG-KTNASETFRNIETATYFRDLVKQFGGTAARNILDSREN 61

Query: 67  KPTT----LKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGD-FDYRKITTKHIR 120
              T    L  +   Y + A   +    +   + +     I  K       R +T + I 
Sbjct: 62  PDDTDTLTLGGIHQSYLEHAASYA-TPGTIARYRNMAASYIFPKIPPQTPIRALTRESIE 120

Query: 121 SGVESRKHTP---------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK-TEG 170
           + V   +  P          +  + +  +  LF + +    +  NP   +  P       
Sbjct: 121 NYVTWLRAKPSRYGTSLKPRTIKRIVAFLSTLFNYQIEIGNLESNPARGIRIPNDAIPTQ 180

Query: 171 IRPWTKEDMQQFKSFWS-EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229
               T + +++        G   R    FL  +GLR  ++       +     +I   K 
Sbjct: 181 PVFLTPQQVEKIADNCGYYGVLVR----FLYATGLRFGEATALTPADVNVKTRTITVSKA 236

Query: 230 GTI------------------ITVELPDGFMKLLAMTPIGKETFFI---NNDKQKMNATQ 268
                                 TV +    + LL    +    F         + +    
Sbjct: 237 WKQGEKSSDFYLGSPKTDTSTRTVLVSKSVIALLKPLLVEDAPFLFHPKTRPDRPLRNKT 296

Query: 269 FSI-WFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
           F    +K            H +R    +    AG     +    G K +   
Sbjct: 297 FRNCAWKQAVENMDPRPRIHDLRHSHVSRLIQAGIPLPVIQKRVGHKDIQTT 348


>gi|228911927|ref|ZP_04075666.1| Phage integrase [Bacillus thuringiensis IBL 200]
 gi|228847722|gb|EEM92637.1| Phage integrase [Bacillus thuringiensis IBL 200]
          Length = 319

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 40/280 (14%), Positives = 82/280 (29%), Gaps = 32/280 (11%)

Query: 85  GSLAVNSRISF----ESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSM 140
              +  ++  +      +   I    G           I     S+K+  ++  +  T +
Sbjct: 31  KKRSERTKQQYLHDLSHFLHYIKETIGTIQELSHNDMEIYFYELSKKYASTTLRKKKTVV 90

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEG--IRPWTKEDMQQFKSFWSEGSQ-PRLAFE 197
           +   K+      ++ N    +++   K E    R    E++ Q      + +     AF 
Sbjct: 91  QQFLKYVYDNNGLSDNFSSRLKKVSVKKEELVNRDLYPEEVTQILDELKKSNYFVYTAFF 150

Query: 198 FLLYSGLRCSDSCRAGVQHL------QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251
            L  +GLR  +   A    L         +  +  +   +       D    L  +  + 
Sbjct: 151 LLTTTGLRIEEIATAKWADLVFHSSLSAYLLRVVGKGNKSREVRIFEDTLDALCHVRSLR 210

Query: 252 KET----------FFINNDKQKMNATQFSIWFKAKATKAGVN--------KSAHGVRKFS 293
           K+T          F    D     A   S     K  +  ++         + H  R F 
Sbjct: 211 KQTTELDASSTSAFLPKADGSNYRADYLSSLVAKKIEEINLDFLRYRQDRITPHTCRHFM 270

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLG 332
           A    + G    ++    G +++   E Y +    R  L 
Sbjct: 271 ANYLMEKGVELKKIRDYLGHESIMTTERYLRERTSRQNLA 310


>gi|189467428|ref|ZP_03016213.1| hypothetical protein BACINT_03816 [Bacteroides intestinalis DSM
           17393]
 gi|189435692|gb|EDV04677.1| hypothetical protein BACINT_03816 [Bacteroides intestinalis DSM
           17393]
          Length = 412

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 46/266 (17%), Positives = 89/266 (33%), Gaps = 35/266 (13%)

Query: 90  NSRISF---ESYFDQIIR---KSGDFDYRKITTKHIRSGVESRKHT----PSSAIQFLTS 139
            +   +     +  + I+      D   ++IT   I       + T     ++  +F+  
Sbjct: 131 ATYRKYEVTRRHLAEFIQSKYNLSDISIKEITPMFITDFELYLRTTCKCGFNTTAKFMQF 190

Query: 140 MRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQQFKSFWSEGSQ---PRLA 195
            + +   A     +  +P  + + R ++   G    T+++++          +    R  
Sbjct: 191 FKRIILIARNNGILIGDPFANYKMRLEKVDRGY--LTEDEIKIILKKKMVSERLEQVRDV 248

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQ-----NNIFSIKTQKTGTIITVELPDG----FMKLLA 246
           F F  +SGL   D       +++     N     K QKT   + V L D       K   
Sbjct: 249 FIFSCFSGLAYVDVANLREDNIRKSFDGNLWIITKRQKTNIDVNVPLLDIPKMILEKYKG 308

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA-GAT 303
             P GK    I+N K        + + K  A   G+ K  + H  R   AT +  A G  
Sbjct: 309 KLPNGKVLPIISNQK-------LNAYLKEIADVCGIKKNLTFHLARHTFATTTTLAKGVP 361

Query: 304 AHELMATYGWKTVDQAETYTKGADRI 329
              +    G   ++  + Y +  +  
Sbjct: 362 IETVSKMLGHTNIETTQIYARITNNK 387


>gi|168210502|ref|ZP_02636127.1| putative integrase/recombinase [Clostridium perfringens B str. ATCC
           3626]
 gi|170711397|gb|EDT23579.1| putative integrase/recombinase [Clostridium perfringens B str. ATCC
           3626]
          Length = 280

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 36/262 (13%), Positives = 78/262 (29%), Gaps = 32/262 (12%)

Query: 85  GSLAVNSRISFESYFD---QIIRKSGDFDYRKITT-------KHIRSGVESRKHTPSSAI 134
             L + +   +E       + I+   D +   +         K  +  +E  K+ PS+  
Sbjct: 16  RGLTLETTKRYEREIKCFLKFIKIKTDKELSDLLEDEIKMCLKKYKMNLEKEKYKPSTIN 75

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP--WTKEDMQQFKSFWSEGSQP 192
             +  +    ++    E          +  K + +       ++ +  +  +      + 
Sbjct: 76  GKIIIINKFLRFC-EIEVKE-------KCVKIQKKPYITNVLSESEYLRLLNVCD-NFRD 126

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA------ 246
           ++    L  +GLR S+     ++ + N    IK  K             +KL+       
Sbjct: 127 KVIIRVLANTGLRVSELLSLEIREIYNGDIQIK-GKGAKYRECFCSSEIIKLIKQYIETE 185

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATISADAGAT 303
                K   F    K  +     +      A KA + K     H +R       A+   +
Sbjct: 186 RLGTDKSKVF-TGRKGALKRQAINKMLFKYAKKAHIKKEKAHPHSLRHLFGKNLAERRVS 244

Query: 304 AHELMATYGWKTVDQAETYTKG 325
              +    G + +     YTK 
Sbjct: 245 LDVIKTFMGHEDIRTTAIYTKR 266


>gi|291085116|ref|ZP_06352113.2| site-specific recombinase, phage integrase family [Citrobacter
           youngae ATCC 29220]
 gi|291072021|gb|EFE10130.1| site-specific recombinase, phage integrase family [Citrobacter
           youngae ATCC 29220]
          Length = 412

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 41/290 (14%), Positives = 101/290 (34%), Gaps = 20/290 (6%)

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYR 112
              +     + R +  T K++ + + +      L  ++     +  ++ +    G+    
Sbjct: 92  EEQRASQEKTRRTRENTFKYVATNWYELKKAAGLKPHTLQDIWNSLNRYVFPHIGEIGID 151

Query: 113 KITTKHIRSGVE--SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER--PKRKT 168
           ++T + + + +E         +  +    +  +  +A+    +  NP   V R  P+   
Sbjct: 152 ELTAQQVIAALEPCRAGGKLETVKRMTQRINEVMDYAMNAGLIVANPVARVGRAFPRPVV 211

Query: 169 EGIRPWTKE---DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225
                   E   ++ +  S  S   Q R   E+ L +  R +++  A    +       +
Sbjct: 212 RHRPSLPPEQLPELMRALSVASIRLQTRCLIEWQLLTMCRPAEASGARWSEVDMKAREWR 271

Query: 226 ----TQKTGTIITVELPDGFMKLLAMTPIGKET--FF---INNDKQKMNATQFSIWFKAK 276
                 K      + L +  M+LL +     +   F    + + K+ MN+   ++  K  
Sbjct: 272 IPEGRMKIQRQHIIPLSEQAMRLLEVMKPISQHGEFIFPALGHPKKPMNSQTANMALKRM 331

Query: 277 ATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET-YTKG 325
             K  +   AHG+R  ++T   +AG     + +       ++    Y + 
Sbjct: 332 GFKGLL--VAHGMRAIASTTLNEAGFPPDVIESALAHMDTNEVRRAYNRA 379


>gi|322420382|ref|YP_004199605.1| integrase family protein [Geobacter sp. M18]
 gi|320126769|gb|ADW14329.1| integrase family protein [Geobacter sp. M18]
          Length = 334

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 40/271 (14%), Positives = 85/271 (31%), Gaps = 47/271 (17%)

Query: 87  LAVNSRISF-------------ESYFDQIIRKSGDFDYRKITTKHIR---SGVESRKHTP 130
           L+  ++ ++             +   ++ +   GD    KI  + I+     +E      
Sbjct: 63  LSTATQKTYDERWKDNKDGLKSKRLAERAMDLIGDIPLSKIDDQMIKYLVKQLEESGVKG 122

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           ++  ++L +M+ L       ++    P   ++  K     IR  +KE+     S   +  
Sbjct: 123 ATINRYLATMKTLL-----HDHQQ--PWEHIKLKKESKGRIRVLSKEEELAVVSLLRDTD 175

Query: 191 Q---------PRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPD 239
                          E L+ +G R S+      + +    N+ +I   K     ++ +  
Sbjct: 176 HKSKRSYYPEAADLVEVLVDTGCRLSEILNLKYEDINWDTNLITIWVNKGDKPRSIPMTK 235

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMN-----ATQFSIWFKAKATKA-GVNKSAHGVRKFS 293
               +L     G       N  +  +     A +   W + +           H +R   
Sbjct: 236 RVGGILLARQEG-------NWLKPFSIDIDQAQKAWSWVRKRMMLEYDREFVMHSLRHTC 288

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324
           AT   D G   + +    G  T+   E Y  
Sbjct: 289 ATRLLDRGIDLYTVKEWLGHSTIQVTERYAH 319


>gi|153212374|ref|ZP_01948156.1| phage integrase [Vibrio cholerae 1587]
 gi|124116582|gb|EAY35402.1| phage integrase [Vibrio cholerae 1587]
          Length = 407

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 42/318 (13%), Positives = 88/318 (27%), Gaps = 50/318 (15%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD 110
            +   P+ ++ +   +    L+ L  ++  S     +  ++   ++      I   G   
Sbjct: 66  YSAHFPESKHASGVPQAKNLLQ-LTKQFLASKD-HDIRRSTLQRYDWVLRDFIEIYGKTR 123

Query: 111 YRKITTKHIRSGVES---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167
                +    +       +  T  +  + L ++     W  + EYV+ +    ++R K  
Sbjct: 124 SSDTLSPRTLTEFRQELVKGKTGRTINRNLVTINAFLAWLYKMEYVSRDLSKVLQRVKES 183

Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK 225
              I+P++  ++           Q R     L+YSG+R  + C    + +   N    I+
Sbjct: 184 EVDIQPFSMAEIDSILKHC-HQLQHRNIVTLLVYSGIRSGELCALAWEDVDFENKTIHIR 242

Query: 226 TQ----------KTGTIITVELPDGFMKLLAMT--------PIGKETFFINNDKQK---- 263
                       KT     V+L    +  L           P   +        +K    
Sbjct: 243 RSTYDMRGLKTTKTDKERFVDLLPPALDALKAQQYLTYSFEPKEYDVELPGQAYRKESLR 302

Query: 264 ------------------MNATQFSIWFKAKATKAGVNKS-AHGVRKFSATISAD-AGAT 303
                                      + A   K GV     + +R   A+     A   
Sbjct: 303 FVFNPKVVREQKVSGYDYYGKRALGRMWTALCKKGGVRYRNQYQLRHTYASWMITHANVN 362

Query: 304 AHELMATYGWKTVDQAET 321
              L    G   +     
Sbjct: 363 VSYLAQQMGHADITMVAR 380


>gi|262201179|ref|YP_003272387.1| integrase family protein [Gordonia bronchialis DSM 43247]
 gi|262084526|gb|ACY20494.1| integrase family protein [Gordonia bronchialis DSM 43247]
          Length = 463

 Score = 79.7 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 55/381 (14%), Positives = 113/381 (29%), Gaps = 79/381 (20%)

Query: 23  YYF-----RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISE 77
           +Y+     R     + R             + AL     +         +  TL   ++ 
Sbjct: 12  WYYVVDLGRDPATNKRRQERKRGFRTKREAVDALDERLSEVRTGIVAVDQRLTLAQYLAS 71

Query: 78  YRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIR---------------- 120
           +  +     +   +  S+  + D  I+   G+   R +   H+                 
Sbjct: 72  WLTAKEQAGIRATTLRSYRQHVDSYIVPTIGNVRLRDLRATHVEHMLSEIAKPPKKPAKG 131

Query: 121 ------SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
                      +  +P++  +   ++R     A R+  V+ N    +E P+     ++PW
Sbjct: 132 VAIGKGKRRNPKALSPATQRRVHATLRSALTSAKRKHLVSFNAAADMELPRASRPKVKPW 191

Query: 175 TKEDMQQFKSFWSEGSQPRLA--FEFLLYSGLRCSDSCRAGVQHLQ-------------- 218
              D+  F       ++ RL   FE +  +GLR  ++       +               
Sbjct: 192 EASDLGAFLDH---ATKDRLGAFFETIAMTGLRRGEALGIRWPDVDFEKARVTVNQQLVE 248

Query: 219 --------------NNIFSIKTQKT--GTIITVELPDGFMKLLAMTP------------- 249
                         +  F     KT  G    V+L  G + +L                 
Sbjct: 249 VDGTGIDCPFCGGEHKQFRFGPCKTASGEARIVDLDSGTLGVLMAQRLRQEQEREQWGDA 308

Query: 250 -IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHEL 307
               +  F   D   +     +  F A   +AG+ +   H +R   A++   AG     +
Sbjct: 309 YNDHQLVFAREDGSPIPPADVTAKFHALTDEAGLRRIRLHDLRHGQASLMLAAGVPIAVV 368

Query: 308 MATYGWKTVD-QAETYTKGAD 327
               G  ++   ++TY+   D
Sbjct: 369 SKRLGHSSISITSDTYSHLLD 389


>gi|218263175|ref|ZP_03477388.1| hypothetical protein PRABACTJOHN_03069 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222903|gb|EEC95553.1| hypothetical protein PRABACTJOHN_03069 [Parabacteroides johnsonii
           DSM 18315]
          Length = 409

 Score = 79.7 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 32/216 (14%), Positives = 77/216 (35%), Gaps = 12/216 (5%)

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---S 187
           +SA++ L +++ + + A+   ++  +P   + R K++   +   ++E++    +      
Sbjct: 186 NSALKHLKNLKKVVRIALANGWIKKDPFYGI-RFKQEEVNVEFLSREELDILMNKEFTIK 244

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-----QNNIFSIKTQKTGTIITVELPDGFM 242
              Q R  F F  ++ L   D  +   +HL              QKT  +  + +     
Sbjct: 245 RLEQVRDIFVFCCFTALAFVDVQQLSREHLIKDNNDALWIRKVRQKTNQMCNIPVLSIPQ 304

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATI-SAD 299
           ++L       E          ++  + + + K  A   G+ K  + H  R  +AT+    
Sbjct: 305 RILGKYKDNAECIKKGVLLPVISNQRMNAYLKEIADLCGIAKRLTTHVARHTAATVVFLA 364

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335
              +   +    G   +   + Y +  D   +    
Sbjct: 365 NDVSMENVSKILGHSNIRMTQHYARVLDSSIMRDMA 400


>gi|254286498|ref|ZP_04961455.1| Int [Vibrio cholerae AM-19226]
 gi|150423447|gb|EDN15391.1| Int [Vibrio cholerae AM-19226]
          Length = 345

 Score = 79.7 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 51/329 (15%), Positives = 100/329 (30%), Gaps = 47/329 (14%)

Query: 24  YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAH 83
           Y +   G+R+R  +        AY + +      + ++ S       L  L+        
Sbjct: 19  YPQGREGKRVRKRF-ATKGEATAYENFIMREVDDKPWMGSKPDNRR-LSELLE------T 70

Query: 84  WGSLAVNS----RISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---------KHTP 130
           W  +  ++    ++ +      I ++ GD      T+K   +   SR           +P
Sbjct: 71  WWQVHGHTIKSGKVVYRKTALTI-KELGDPIASTFTSKQYLAFRASRVSHFNKENKSLSP 129

Query: 131 SSAIQFLTSMRVLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW--- 186
           +     L  +  +F   ++ +++   NP   +E  K     +    K D+Q F       
Sbjct: 130 TYQNFQLNLLSGMFSRLIKYKQWNLPNPLDDIEPIKVNQRALAYLDKADIQPFLERLGCF 189

Query: 187 -SEG-----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
            SEG      +  L  +  L +G R S++       +     +    K   I +V + + 
Sbjct: 190 ESEGRSVSIPEIVLIAKICLATGARISEALSLERSQISEFKLTFVETKGKRIRSVPISEN 249

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA-----HGVRKFSAT 295
             K + +        F                      KA  +        H +R   AT
Sbjct: 250 LYKEIMLASSSSTKIFSTTYGSA----------HRYIKKALPDYVPEGQATHVLRHTFAT 299

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTK 324
                      L    G + ++Q   Y  
Sbjct: 300 HFMMNRGDILILQRILGHQKIEQTMAYAH 328


>gi|34557587|ref|NP_907402.1| integrase-recombinase protein XERCD family [Wolinella succinogenes
           DSM 1740]
 gi|34483304|emb|CAE10302.1| INTEGRASE-RECOMBINASE PROTEIN XERCD FAMILY [Wolinella succinogenes]
          Length = 363

 Score = 79.7 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 31/195 (15%), Positives = 69/195 (35%), Gaps = 22/195 (11%)

Query: 163 RPKRKTEGIRPWTKEDMQQFKSFWS-------EGSQPRLAFEFLLYSGLRCSDSCRAGVQ 215
           R K   +      ++++++F              ++ RL  + +LY+G+R S++    ++
Sbjct: 158 RGKSGEKLPAYMNEKELERFLEALDSYEFSLDIRARNRLVIKLILYTGIRVSEALGLRLK 217

Query: 216 HL----QNNIFSIKTQKTGTIITV----ELPDGFMKLLAMTP---IGKETFFINNDKQKM 264
                  + +  I+ +     + +     +     + L +       ++  F N    ++
Sbjct: 218 DFLPDQDSYLLKIRGKGNKERMVMVKKEPIQKELDEWLGVRQSLNAQEDWLFCNQKGGRL 277

Query: 265 NATQFSIWFKAKATKAGVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
                S   +     AG+ K    AH +R   AT+          +    G   ++ +  
Sbjct: 278 TQAYVSRIVEQILLWAGIRKEKNGAHMLRHSFATLLYQKKRDLVLVQEALGHADLNTSRI 337

Query: 322 YTKGADRIRLGIKNS 336
           YT   DR RL    S
Sbjct: 338 YTH-FDRERLREAAS 351


>gi|256840951|ref|ZP_05546459.1| tyrosine type site-specific recombinase [Parabacteroides sp. D13]
 gi|256738223|gb|EEU51549.1| tyrosine type site-specific recombinase [Parabacteroides sp. D13]
          Length = 419

 Score = 79.7 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 50/272 (18%), Positives = 99/272 (36%), Gaps = 29/272 (10%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQ------IIRKSGDFDYRKITTK---HIRSGVESR 126
            +Y K    G  A  +   +   +        I     D   +++T          + + 
Sbjct: 126 EDYEKQVEAGMKAKGTLEKYRIVYKHLQEFLDIRYHVKDIALKELTPAFISDFEMFLRTD 185

Query: 127 KHTPSSAIQFLTS-MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           KH  ++ +      +R +   A+  E++  +P    E  K +T      TKE+++     
Sbjct: 186 KHCCTNTVWLYVCPLRTMVFIAINNEWLTRDPFREYEIKKEETT-RSFLTKEEIRLLMEG 244

Query: 186 WSEGSQPRLAFEFLLY---SGLRCSDSCRAGVQHLQN-----NIFSIKTQKTGTIITVEL 237
             + ++  L  +  L+   +GL  SD      ++++         +I  QKTG +  + L
Sbjct: 245 KLKNAKQELYRDLYLFCAFTGLSFSDMRNLTEENIRTYFDEHEWININRQKTGVVSNIRL 304

Query: 238 PDGFMKLLAMTPIGKETFFINNDK--QKMNATQFSIWFKAKATKAGVNK--SAHGVRKFS 293
            D     +A   IGK      N +     +        +A A + G+ K  + H  R  +
Sbjct: 305 LD-----IANRIIGKYRGLCENGRIFPVPHYNTCLAGIRAVAKRCGITKHITWHQSRHTA 359

Query: 294 AT-ISADAGATAHELMATYGWKTVDQAETYTK 324
           AT +    G     + +  G K++   + Y K
Sbjct: 360 ATTVFLSNGVPIETVSSMLGHKSIKTTQIYAK 391


>gi|317503413|ref|ZP_07961455.1| integrase [Prevotella salivae DSM 15606]
 gi|315665465|gb|EFV05090.1| integrase [Prevotella salivae DSM 15606]
          Length = 304

 Score = 79.7 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 36/273 (13%), Positives = 89/273 (32%), Gaps = 19/273 (6%)

Query: 85  GSLAVNSRISFESYFD--QIIRKSGDFDYRKITTK---HIRSGVESRKHTPSSAIQFLTS 139
             ++  +++++++      + +   D  +  IT       +  ++ R  + ++   +L S
Sbjct: 34  KGVSKATQLNYQTAVCSFLMFKAKDDVLFSTITQAEIVRYQQWLQQRAISANTTTCYLRS 93

Query: 140 MRVLFKWAVRQEYVAI-NPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-SEGSQPRLAFE 197
           +R L+  AV++  V    P   V+  +             +QQ +     + S    A +
Sbjct: 94  LRALYNKAVKRRLVKDIKPFEKVQT-RNNKVVKVALKPIQLQQLRELHLKDKSFQAFARD 152

Query: 198 FLLYS----GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE 253
             L+S    G+   D        +++     + QKT   + V+L      ++        
Sbjct: 153 LFLFSCYAMGMPPIDMVHLKWTQIKHGFIHYQRQKTHRKVIVKLEPCMQAIIDRWGKPDN 212

Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAG------VNKSAHGVRKFSATISADAGATAHEL 307
            +        M    F   +       G         S++  R   A+++ +       +
Sbjct: 213 KYIFPIL-PCMKYDSFLRQYNRALHALGEEIRLDFPLSSYVARHTWASLAYENNVALSII 271

Query: 308 MATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
               G  +      Y    D   +   N + ++
Sbjct: 272 SQALGHSSSKTTLNYIHEIDLKMVAEANRKVLN 304


>gi|312970927|ref|ZP_07785106.1| integrase [Escherichia coli 1827-70]
 gi|310336688|gb|EFQ01855.1| integrase [Escherichia coli 1827-70]
          Length = 349

 Score = 79.7 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 40/314 (12%), Positives = 93/314 (29%), Gaps = 28/314 (8%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87
            +GRR+R           A+     G    + ++     +  TLK ++  + K  H  SL
Sbjct: 20  RNGRRVR-KQFATKGEALAFERYTMGEIEAKPWLGESVDR-RTLKDVVELWFK-LHGKSL 76

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-------------KHTPSSAI 134
               +  ++     ++   G+     +T+K      + R               +P +  
Sbjct: 77  TAG-QHVYDKLL-LMVDALGNPLATDLTSKMFAHYRDKRLTGEIYFSEKWKKGASPVTIN 134

Query: 135 QFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
              + +  +F    R   +   NP  ++ +     + +   T E + +  +         
Sbjct: 135 LEQSYLSSVFSELSRLGEWSYPNPLENMRKFTIAEKEMAWLTHEQIVELLADCKRQDPIL 194

Query: 194 -LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252
            L  +  L +G R  ++       +     +    K     ++ +     + +       
Sbjct: 195 ALVVKICLSTGARWREAINLTRSQVTKYRITFVRTKGKKNRSIPISKELYEEIMAL--DG 252

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYG 312
             FF +   Q ++        +  +      +  H +R   A     +G     L    G
Sbjct: 253 FNFFTDCYFQFLSV------MEKTSIVLPRGQLTHVLRHTFAAHFMMSGGNILALQKILG 306

Query: 313 WKTVDQAETYTKGA 326
              +     Y   A
Sbjct: 307 HHDIKMTMRYAHLA 320


>gi|300872275|gb|ADK38965.1| IntI4 [Vibrio sp. V37(2010)]
          Length = 293

 Score = 79.7 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 43/289 (14%), Positives = 86/289 (29%), Gaps = 57/289 (19%)

Query: 93  ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEY 152
            ++  +  + I          +  K +   +         A +  +       +  ++  
Sbjct: 1   RAYLHWITRYIHFHNKKHPSLMGDKEVEEFLTYLAVQGKVATKTQSLALNSLSFLYKE-- 58

Query: 153 VAINP-CLSVE--RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDS 209
           +   P  L +   R + + +     T++++++         + +L  + L  SGLR  + 
Sbjct: 59  ILKTPLSLEIRFQRSQLERKLPVVLTRDEIRRLLEIVDP--KHQLPIKLLYGSGLRLMEC 116

Query: 210 CRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLAMTPIGKETFFINN-------- 259
            R  VQ +  +  +I+    K G   TV L       L       + ++  +        
Sbjct: 117 MRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHLKEQIALAKRYYDRDLHQKNYGG 176

Query: 260 --------------------------------------DKQKMNATQFSIWFKAKATKAG 281
                                                  +  MN T      +  A +AG
Sbjct: 177 VWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVMRRHHMNETVLQKAVRRSAQEAG 236

Query: 282 VNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           + K+   H +R   AT S + GA         G   V   + YT   DR
Sbjct: 237 IEKTVTCHTLRHSFATHSLEVGADIRTGHELLGHTDVKTEQNYTHVLDR 285


>gi|257886708|ref|ZP_05666361.1| phage integrase [Enterococcus faecium 1,141,733]
 gi|257822762|gb|EEV49694.1| phage integrase [Enterococcus faecium 1,141,733]
          Length = 326

 Score = 79.7 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 54/324 (16%), Positives = 104/324 (32%), Gaps = 40/324 (12%)

Query: 59  EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH 118
           E     +    T + +   + ++       V    +   +   I+ K G    ++I+ K+
Sbjct: 4   EKNGLEKLTNETFQDVYDLWLEAYQTTVKEVTLIKTKIKFNKWILPKYGKLRMKEISVKN 63

Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE----GIRPW 174
            +  V              +S   + K+A+    +  NP  +V  PKR+ E     I+ +
Sbjct: 64  AKKIVNQWAKDTDQYRVLHSSASRVCKYAINLGTIERNPLENVLMPKREKERTDKKIKVY 123

Query: 175 TKEDMQQFKSFWSEGSQPR------LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--- 225
           T+  ++    +    S              L YSG+R S++        Q    SI    
Sbjct: 124 TRNQLKALFIYLDAQSPMYKNDFNATLLRLLFYSGMRISEALALKWSDFQEKTVSINKTL 183

Query: 226 -TQKTGTIITVE---------LPDGF------------MKLLAMTPIGKET-FFINNDKQ 262
             +K G  I+           L D               K +    +   T  F    K+
Sbjct: 184 SQRKNGYKISSPKTKSSTNSLLLDEETFTIMKKWLVNQRKYMLTLGVTDPTMVFCGIYKE 243

Query: 263 KMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-E 320
            +          +   KAG+     H  R   A++  D+GAT  E+        + Q  +
Sbjct: 244 IVIHHAIYSRLISLTEKAGIPFLGVHVTRHTHASLLLDSGATMKEVQDRLRHTKISQTMD 303

Query: 321 TYTKGADRIRLGIKNSRRISSVVD 344
            Y+  A   +   +   ++   + 
Sbjct: 304 VYSHLAKETK--EQTVEKLVKHLT 325


>gi|253571563|ref|ZP_04848969.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251838771|gb|EES66856.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 412

 Score = 79.7 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 46/266 (17%), Positives = 89/266 (33%), Gaps = 35/266 (13%)

Query: 90  NSRISF---ESYFDQIIR---KSGDFDYRKITTKHIRSGVESRKHT----PSSAIQFLTS 139
            +   +     +  + I+      D   ++IT   I       + T     ++  +F+  
Sbjct: 131 ATYRKYEVTRRHLAEFIQSKYNLSDISIKEITPMFITDFELYLRTTCKCGFNTTAKFMQF 190

Query: 140 MRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQQFKSFWSEGSQ---PRLA 195
            + +   A     +  +P  + + R ++   G    T+++++          +    R  
Sbjct: 191 FKRIILIARNNGILIGDPFANYKIRLEKVDRGY--LTEDEIKIILKKKMVSERLEQVRDV 248

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQ-----NNIFSIKTQKTGTIITVELPDG----FMKLLA 246
           F F  +SGL   D       +++     N     K QKT   + V L D       K   
Sbjct: 249 FIFSCFSGLAYVDVANLKEDNIRKSFDGNLWIITKRQKTNIDVNVPLLDIPKMILEKYKG 308

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA-GAT 303
             P GK    I+N K        + + K  A   G+ K  + H  R   AT +  A G  
Sbjct: 309 KLPNGKVLPIISNQK-------LNAYLKEIAEVCGIKKNLTFHLARHTFATTTTLAKGVP 361

Query: 304 AHELMATYGWKTVDQAETYTKGADRI 329
              +    G   ++  + Y +  +  
Sbjct: 362 IETVSKMLGHTNIETTQIYARITNNK 387


>gi|167924633|ref|ZP_02511724.1| integrase/recombinase [Burkholderia pseudomallei BCC215]
          Length = 323

 Score = 79.7 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 46/265 (17%), Positives = 83/265 (31%), Gaps = 32/265 (12%)

Query: 89  VNSRISFESY---FDQIIRKSGDFDYRKITTKHIRSGVE--SRKHTPSSAIQFLTSMRVL 143
            ++R ++      F      +G      +   H+ S VE  +R H  S+  Q L ++R L
Sbjct: 41  PHTRRAYARAASDFLTWCADAGVSSITAVQPLHVASWVELQNRTHAASTVKQRLAAIRHL 100

Query: 144 FKWAVRQEYVAINPCLSVERPKRK--TEGIRPWTKEDMQQFKSF----WSEGSQPRLAFE 197
           F W V  + V +N   SV  P     T         + +Q           G + R    
Sbjct: 101 FDWLVTGQVVPVNSAASVRSPSHTVHTGATPVLDPAEARQLLDSIDVSTPIGLRDRALIA 160

Query: 198 FLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE 253
            +++S  R   +    V  +    +     ++ +K G    +         L     G  
Sbjct: 161 LMVFSFARIGAALAMRVDDVYVQQRRLWIRLR-EKGGKAHAMPCHHTLEMALRAYLDGTG 219

Query: 254 TFF---------INNDKQKMNATQFSI-----WFKAKATKAGV--NKSAHGVRKFSATIS 297
             F         I     +++ T  +        + +A  AG+     +H +R    T  
Sbjct: 220 IVFDRKGALFRTIARGTGQLSETTLAQANAYVMVRRRAAAAGIATKIGSHALRATGITTY 279

Query: 298 ADAGATAHELMATYGWKTVDQAETY 322
              G T     A     +    + Y
Sbjct: 280 LRNGGTLENAAAIANHVSTRSTQRY 304


>gi|301309611|ref|ZP_07215553.1| transposase [Bacteroides sp. 20_3]
 gi|300832700|gb|EFK63328.1| transposase [Bacteroides sp. 20_3]
          Length = 412

 Score = 79.7 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 37/273 (13%), Positives = 89/273 (32%), Gaps = 36/273 (13%)

Query: 86  SLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGVESRKHT----PSSAIQ 135
             +  +   +++   ++ R         D  + ++T + IR+     K       ++ ++
Sbjct: 128 DYSPVTINRYKNVVKKLQRLIPSYYGKEDITFHELTPEFIRAFDIYLKTEGGLCRNTIVR 187

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WSEGSQP 192
           ++   +     A+ +E++  NP    +  + +T+     T +++Q               
Sbjct: 188 YMKCFKKFTNMALAKEWMRKNPFYGYKMEQDETD-PVFLTYDELQAVMKKKFTIPRLELV 246

Query: 193 RLAFEFLLYSGLRCSDSCRAG-----VQHLQNNIFSI------KTQKTGTIITVELPDGF 241
           R  F F  ++GL  SD            +L +             +K  +I  + L    
Sbjct: 247 RDIFVFACFTGLAFSDVATLSGENLVQDNLGDWWIRKGRVKLEHRRKASSISNIPLLPVP 306

Query: 242 MKLLAMTPIGKETFFINNDK---QKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATI 296
           + +L      +E             M   + + + K  A   G+ K  + H  R    T 
Sbjct: 307 LAILEKY---REHPICVKKGCCLPVMCNQKMNSYLKEIADFCGIKKNLTTHVARHTFGTT 363

Query: 297 --SADAGATAHELMATYGWKTVDQAETYTKGAD 327
              A+      ++    G  +    + Y +  +
Sbjct: 364 VTLANN-VPLQDVSVMLGHASTRMTQHYARVMN 395


>gi|296393237|ref|YP_003658121.1| integrase family protein [Segniliparus rotundus DSM 44985]
 gi|296180384|gb|ADG97290.1| integrase family protein [Segniliparus rotundus DSM 44985]
          Length = 407

 Score = 79.7 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 42/324 (12%), Positives = 98/324 (30%), Gaps = 36/324 (11%)

Query: 26  RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS------------PRKKPTTLKW 73
           R G G+R R  Y  +S        A       +++++             P+    T+  
Sbjct: 47  RHGRGKRWRANYVDDSG--DQKTRAFDTKQEAQKWLDGIMSTLVQGTYVDPKVASMTVGK 104

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
              ++ +   +      +  S +++  +I          ++    +++ +   K    + 
Sbjct: 105 WCDQWIE--GYSVHRSGTVRSAKTHIAKIKESFDTKPLNEVRPSAVKAWLADLKKQGLAD 162

Query: 134 IQFL---TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
                  + +  +   AV    +A NPC     P          T E +           
Sbjct: 163 SYVYALHSRLSQILGDAVYDGVLARNPCSRKTAPPMGKPKCYVATTEQIWGLYEAVPR-- 220

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQ---------NNIFSIKTQKTGTIITVELPDGF 241
             + A     ++GLR ++   A    +                  +   +   V + + F
Sbjct: 221 SIKSAILLGAFAGLRVAEVSGALRTDMDFIKRVFNPARQWEDEPLKTETSATPVPVSEEF 280

Query: 242 MKLLAMT--PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK----SAHGVRKFSAT 295
           + LL+ T  P       +N+  + +   Q     +       V+     + H +R ++A+
Sbjct: 281 VMLLSTTILPGEHTHLVVNDHGEPVPPWQIERAIRDARESGLVDLPETFTFHDLRHYNAS 340

Query: 296 ISADAGATAHELMATYGWKTVDQA 319
               +GA    + A     +    
Sbjct: 341 WLIASGADIKTVQARVRHASAKTT 364


>gi|238059161|ref|ZP_04603870.1| plasmid multimer resolution protein pmrA [Micromonospora sp. ATCC
           39149]
 gi|237880972|gb|EEP69800.1| plasmid multimer resolution protein pmrA [Micromonospora sp. ATCC
           39149]
          Length = 325

 Score = 79.7 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 43/285 (15%), Positives = 93/285 (32%), Gaps = 34/285 (11%)

Query: 88  AVNSRISFESYFDQIIRKSGD-FDYRKITTKHIRSGVESRKHTPSSA-IQFLTSMRVLFK 145
              +R ++     ++   +GD      +T +     +       ++   + L+++     
Sbjct: 39  DPATRATYTETLRRLRHTAGDQVSVATLTPEIYEQTMARWDQRATNTWNKHLSALTSFTS 98

Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLR 205
           +  RQ+++  +P   +ER K      +   +  + +  +      + R+ +  L  +  R
Sbjct: 99  YCRRQDWLTTDPGQRLERRKVTRTRDKAIPRARLDRLFTDDRNPLRERVLWRMLYETCAR 158

Query: 206 CSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLAMTPIGKET---------- 254
             +     V  L       + T+K G    V       +LL     G+            
Sbjct: 159 AEEILGLDVPDLDMEFRRALVTEKGGDRAYVHWETPTARLLPRLLAGRTAGPVFLADRRA 218

Query: 255 ------------FFINNDKQKMNATQFSIWFKAKATK---AGVNKSAHGVRKFSATISAD 299
                          +  + +++  +    FK  +      G   + H +R    T  A 
Sbjct: 219 AAAGRRALALGDICPDTGRGRLSYPRAEYLFKQASKLHDPHGTGYTLHQLRHSGLTHLAA 278

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
            G +A EL A    + +     Y       RLG + S RI++  D
Sbjct: 279 KGRSAAELQAKSRHRHLATLGIYV------RLGEETSARITAEDD 317


>gi|154493767|ref|ZP_02033087.1| hypothetical protein PARMER_03109 [Parabacteroides merdae ATCC
           43184]
 gi|160890046|ref|ZP_02071049.1| hypothetical protein BACUNI_02486 [Bacteroides uniformis ATCC 8492]
 gi|154086517|gb|EDN85562.1| hypothetical protein PARMER_03109 [Parabacteroides merdae ATCC
           43184]
 gi|156860434|gb|EDO53865.1| hypothetical protein BACUNI_02486 [Bacteroides uniformis ATCC 8492]
          Length = 454

 Score = 79.7 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 37/273 (13%), Positives = 89/273 (32%), Gaps = 36/273 (13%)

Query: 86  SLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGVESRKHT----PSSAIQ 135
             +  +   +++   ++ R         D  + ++T + IR+     K       ++ ++
Sbjct: 171 DYSPVTINRYKNVVKKLQRLIPSYYGKEDITFHELTPEFIRAFDIYLKTEGGLCRNTIVR 230

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WSEGSQP 192
           ++   +     A+ +E++  NP    +  + +T+     T +++Q               
Sbjct: 231 YMKCFKKFTNMALAKEWMRKNPFYGYKMEQDETD-PVFLTYDELQAVMKKKFTIPRLELV 289

Query: 193 RLAFEFLLYSGLRCSDSCRAG-----VQHLQNNIFSI------KTQKTGTIITVELPDGF 241
           R  F F  ++GL  SD            +L +             +K  +I  + L    
Sbjct: 290 RDIFVFACFTGLAFSDVATLSGENLVQDNLGDWWIRKGRVKLEHRRKASSISNIPLLPVP 349

Query: 242 MKLLAMTPIGKETFFINNDK---QKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATI 296
           + +L      +E             M   + + + K  A   G+ K  + H  R    T 
Sbjct: 350 LAILEKY---REHPICVKKGCCLPVMCNQKMNSYLKEIADFCGIKKNLTTHVARHTFGTT 406

Query: 297 --SADAGATAHELMATYGWKTVDQAETYTKGAD 327
              A+      ++    G  +    + Y +  +
Sbjct: 407 VTLANN-VPLQDVSVMLGHASTRMTQHYARVMN 438


>gi|150004164|ref|YP_001298908.1| transposase [Bacteroides vulgatus ATCC 8482]
 gi|255012337|ref|ZP_05284463.1| transposase [Bacteroides sp. 2_1_7]
 gi|149932588|gb|ABR39286.1| transposase [Bacteroides vulgatus ATCC 8482]
          Length = 411

 Score = 79.7 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 37/273 (13%), Positives = 89/273 (32%), Gaps = 36/273 (13%)

Query: 86  SLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGVESRKHT----PSSAIQ 135
             +  +   +++   ++ R         D  + ++T + IR+     K       ++ ++
Sbjct: 128 DYSPVTINRYKNVVKKLQRLIPSYYGKEDITFHELTPEFIRAFDIYLKTEGGLCRNTIVR 187

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WSEGSQP 192
           ++   +     A+ +E++  NP    +  + +T+     T +++Q               
Sbjct: 188 YMKCFKKFTNMALAKEWMRKNPFYGYKMEQDETD-PVFLTYDELQAVMKKKFTIPRLELV 246

Query: 193 RLAFEFLLYSGLRCSDSCRAG-----VQHLQNNIFSI------KTQKTGTIITVELPDGF 241
           R  F F  ++GL  SD            +L +             +K  +I  + L    
Sbjct: 247 RDIFVFACFTGLAFSDVATLSGENLVQDNLGDWWIRKGRVKLEHRRKASSISNIPLLPVP 306

Query: 242 MKLLAMTPIGKETFFINNDK---QKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATI 296
           + +L      +E             M   + + + K  A   G+ K  + H  R    T 
Sbjct: 307 LAILEKY---REHPICVKKGCCLPVMCNQKMNSYLKEIADFCGIKKNLTTHVARHTFGTT 363

Query: 297 --SADAGATAHELMATYGWKTVDQAETYTKGAD 327
              A+      ++    G  +    + Y +  +
Sbjct: 364 VTLANN-VPLQDVSVMLGHASTRMTQHYARVMN 395


>gi|262165109|ref|ZP_06032846.1| integrase [Vibrio mimicus VM223]
 gi|262024825|gb|EEY43493.1| integrase [Vibrio mimicus VM223]
          Length = 597

 Score = 79.7 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 45/308 (14%), Positives = 89/308 (28%), Gaps = 58/308 (18%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS--- 132
             Y K      +   +   +++    ++   GD     +         E     P++   
Sbjct: 264 ELYVKDRSKDQIRPKTLERYKARMRLMLYILGDRPIDSLKRPDALMFKEKLLQLPANLNK 323

Query: 133 ------------------------AIQFLTSMRVLFKWAVRQEYVAINPCLS--VERPKR 166
                                   A   +T     F W V  EY   N      V+  K+
Sbjct: 324 VSDFKGLSVDDVIALKPSPMSVSTANDTMTDASSFFDWCVLNEYATKNVFKGLKVKTNKK 383

Query: 167 KTEGIRPWTKEDMQQFKSF--WSEGSQPRLAFEFL----LYSGLRCSDSCRAGVQHLQNN 220
            ++    +T+ D++       +  G +    + +L    LY+G R ++ C+  V  ++ +
Sbjct: 384 ASDERSAFTESDLKTLFQHPYFQGGERKHPHYYWLPVLGLYTGARLNELCQLHVCDVRRD 443

Query: 221 --------IFSIKTQ----KTGTII-TVELPDGFMKL---LAMTPIGKETFF-INNDKQK 263
                     +   +    K  + + T+ L    ++L     +  +  E  F      + 
Sbjct: 444 DESGLWTMTITNTQEDQNTKNSSSVRTIPLHPKLLELGFIEYVQSLNHERVFPELKKGRD 503

Query: 264 MNATQFSIWFKAKA-----TKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
                 S WF              NK+ H  R         +GA+     A  G     +
Sbjct: 504 GYGQAPSKWFGRFRDSVLPKAKEENKAYHSFRHTFIDALKQSGASYSHAAAYVGHGDGSE 563

Query: 319 A-ETYTKG 325
               Y K 
Sbjct: 564 TFGRYGKA 571


>gi|168261001|ref|ZP_02682974.1| site-specific recombinase, phage integrase family [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|168465660|ref|ZP_02699542.1| site-specific recombinase, phage integrase family [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|195631733|gb|EDX50253.1| site-specific recombinase, phage integrase family [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|205349738|gb|EDZ36369.1| site-specific recombinase, phage integrase family [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
          Length = 387

 Score = 79.7 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 36/214 (16%), Positives = 76/214 (35%), Gaps = 22/214 (10%)

Query: 131 SSAIQFLTSMRVLFKWA-VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
           S+  + L  M+ + + A    +++   P   ++ P  + + +R   KE+ ++      E 
Sbjct: 144 STKAKHLALMKAILRAAERDWKWLEKAPV--IKVPAVRNKRVRWLEKEEAKRLIDECPEP 201

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGFMKLL 245
            +  + F     +GLR S+      Q +         + +  K+   I V L D   K+L
Sbjct: 202 LKSVVKFALA--TGLRRSNIINMEWQQIDMQRRVAWVNPEDSKSNRAIGVALNDTACKVL 259

Query: 246 AMTPIGKETFFINNDKQKMNATQF------------SIWFKAKATKAGV-NKSAHGVRKF 292
                    +   + K+ +                    + A   +AG+ +   H +R  
Sbjct: 260 RDQIGKHHKWVFVHTKEGIRPDGSKTPTIRKMRVDDQRAWNAACRRAGIEDFRFHDLRHT 319

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            A+    +G     L    GW++++    Y   A
Sbjct: 320 WASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLA 353


>gi|321156852|emb|CBW38838.1| integrase [Streptococcus pneumoniae]
          Length = 395

 Score = 79.7 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 58/364 (15%), Positives = 113/364 (31%), Gaps = 50/364 (13%)

Query: 6   RLPPFVTKERTRHGKIIYYFRKG-----------HGRRIRLPYPHESTFIPAYMSALTGS 54
           +   +    +   GKI +    G            GR+ +   P  S F  AY   L   
Sbjct: 5   KTKKYKGVYKDSKGKIYFQIELGVDPITGKRIQKKGRKNQQGLPFNS-FKEAYEEIL--- 60

Query: 55  TPKREYINSPRKKP-TTLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYR 112
             K E++NS       T +  + E Y K        V  + +   +    I++ G     
Sbjct: 61  RLKHEFVNSTINNSFLTFREFMEEIYLKYYQQKVQFVTYQTALPHH-QLFIKQFGSKKLS 119

Query: 113 KITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170
            I+T        +   K++ + A    +  +    +A R  Y+   P   ++ P+ K   
Sbjct: 120 DISTIDCERFRLAIIDKYSSNYAKNMWSRFKACLGYAERLGYIDRVPFKGLDNPRGKHPD 179

Query: 171 IRPWTKED----MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSI 224
            + WT ++    +  F     EG    +       +GLR S+      + +        +
Sbjct: 180 TKFWTFDEFKKVINSFDISEYEGLHNYMTIWLYFMTGLRVSEGIALKWEDIDFERKWIHV 239

Query: 225 --KTQKTGTIIT--------------VELPDGFMKLLAMT-----PIGKETFFINNDKQK 263
               +K    +               ++L D  + +L            + + I+     
Sbjct: 240 HSTIEKDKNGVWYAKQQTKTVAGNRKIDLDDFTITILKKWREVQIKNDDKDYVISRFGAP 299

Query: 264 MNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG-ATAHELMATYGWKTVDQA-E 320
           +  +  S   K  A   GV + +  G+R   A+   +        +    G         
Sbjct: 300 LCKSTISRIIKRHAKITGVPEITGKGLRHSHASYLINVLHKDTLYVSYRLGHADKSTTLN 359

Query: 321 TYTK 324
           TY+ 
Sbjct: 360 TYSH 363


>gi|319938696|ref|ZP_08013060.1| hypothetical protein HMPREF9459_00046 [Streptococcus anginosus
           1_2_62CV]
 gi|319811746|gb|EFW08012.1| hypothetical protein HMPREF9459_00046 [Streptococcus anginosus
           1_2_62CV]
          Length = 243

 Score = 79.7 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 49/242 (20%), Positives = 95/242 (39%), Gaps = 15/242 (6%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSSAIQFLTSMRVL 143
            +L+ NS+ ++    +Q +    D  + KIT  ++R    S     PS   + L+++   
Sbjct: 12  KNLSDNSKTAYFYDLEQFV----DVTHAKITETNLRIYQASIADFKPSVQKRKLSAVNQF 67

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203
             +  +Q  ++      +E PK            D+  F +  ++    RL    +L  G
Sbjct: 68  LHYLYKQRLISD--FYRLELPKVGIPKEHDAEILDLSDFYADTNQY-NGRLIALLILEMG 124

Query: 204 LRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK 263
           L  S+  +  V  +  +   I+ +K G    V +PD  +  L  T  G  T+ +  + + 
Sbjct: 125 LLPSEILQLKVADVNLDFQIIRIEKAGQKRIVPIPDQLIGELETTLEG--TYLLEKNGKS 182

Query: 264 MNAT-QFSIW--FKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
            +    F     F  +  +A +  SA  +R+       + G   +E+    G KT+   E
Sbjct: 183 YSRQWGFRQLEAFLIEKNQATL--SAQSLREQYILRQREKGVEIYEIARNLGLKTMMTLE 240

Query: 321 TY 322
            Y
Sbjct: 241 KY 242


>gi|307701389|ref|ZP_07638409.1| site-specific recombinase, phage integrase family [Mobiluncus
           mulieris FB024-16]
 gi|307613404|gb|EFN92653.1| site-specific recombinase, phage integrase family [Mobiluncus
           mulieris FB024-16]
          Length = 368

 Score = 79.7 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 51/352 (14%), Positives = 98/352 (27%), Gaps = 48/352 (13%)

Query: 10  FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALT---GSTPKREYINSPRK 66
            +T+ R + G+++Y  R   G +        +     Y   L    G T  R  ++S   
Sbjct: 3   GITEIRHKDGRVVYRVRFRDG-KTNASETFRNIETATYFRDLVKQFGGTAARNILDSREN 61

Query: 67  KPTT----LKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGD-FDYRKITTKHIR 120
              T    L  +   Y + A   +    +   + +     I  K       R +T + I 
Sbjct: 62  PDDTDTLTLGGIHQSYLEHAASYA-TPGTIARYRNMAASYIFPKIPPQTPIRALTRESIE 120

Query: 121 SGVESRKHTP---------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK-TEG 170
           + V   +  P          +  + +  +  LF + +    +  NP   +  P       
Sbjct: 121 NYVTWLRAKPSRYGTSLKPRTIKRIVAFLSTLFNYQIEIGNLESNPARGIRIPNDAIPTQ 180

Query: 171 IRPWTKEDMQQFKSFWS-EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229
               T + +++        G   R    FL  +GLR  ++       +     +I   K 
Sbjct: 181 PVFLTPQQVEKIADNCGYYGVLVR----FLYATGLRFGEATALTPADVNVKTRTITVSKA 236

Query: 230 GTI------------------ITVELPDGFMKLLAMTPIGKETFFI---NNDKQKMNATQ 268
                                 TV +    + LL    +    F         + +    
Sbjct: 237 WKQGEKSSDFYLGSPKTDTSTRTVLVSKSVIALLKPLLVEDAPFLFHPKTRPDRPLRNKT 296

Query: 269 FSI-WFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
           F    +K            H +R    +    AG     +    G K +   
Sbjct: 297 FRNCAWKQAVENMDPRPRIHDLRHSHVSRLIQAGIPLPVIQKRVGHKDIQTT 348


>gi|256842147|ref|ZP_05547652.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|298374988|ref|ZP_06984945.1| integrase [Bacteroides sp. 3_1_19]
 gi|256736463|gb|EEU49792.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|298267488|gb|EFI09144.1| integrase [Bacteroides sp. 3_1_19]
          Length = 407

 Score = 79.7 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 45/287 (15%), Positives = 90/287 (31%), Gaps = 35/287 (12%)

Query: 86  SLAVNSRISFESYFDQIIR------KSGDFDYRKITTKHIRSG----VESRKHTPSSAIQ 135
           +  V S  ++ + +  I R      K  D  +  +    I          R   P + I 
Sbjct: 127 NRTVGSLRAYSNAYSHIERFLQAQYKLSDIPFSALDRSFIDKYDLYLRTERNLAPGTIIN 186

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS---QP 192
               ++ +   A+    +  +P +  E P R     +  T E++ +  +           
Sbjct: 187 LTVQLKTIVGEAIADGIITASPFMGYE-PMRPKHVQKYLTAEELHRIMTTPLHRQTLYHV 245

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHL---QNNIFSIK--TQKTGTIITVELPDG----FMK 243
           R  F F  ++G+   D       +L   ++ I+ IK   QKT     + L D       K
Sbjct: 246 RDMFLFSCFTGIPYGDMRLLTKDNLCLAEDGIWWIKSARQKTKIEFEIPLLDLPLQILKK 305

Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATIS-ADA 300
                P  K              +  +++ K  A    +++    H  R   AT      
Sbjct: 306 YSGTAPGDKLLPM-------YCNSTLNLYLKEIARICHIDRPLVFHAGRHTYATEITLSH 358

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
           G     +    G   ++  + Y K  D       +++ ++  +    
Sbjct: 359 GVPLETVSRMLGHSQIETTQIYAKVTDEK--IDADTKALNRKISERF 403


>gi|229496998|ref|ZP_04390703.1| integrase [Porphyromonas endodontalis ATCC 35406]
 gi|229316100|gb|EEN82028.1| integrase [Porphyromonas endodontalis ATCC 35406]
          Length = 384

 Score = 79.7 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 43/268 (16%), Positives = 89/268 (33%), Gaps = 32/268 (11%)

Query: 86  SLAVNSRISF---ESYFDQIIRKS---GDFDYRKITTKHIRSG----VESRKHTPSSAIQ 135
           S++  +   +     +F + ++      D    ++T   IR        +     ++A +
Sbjct: 103 SVSAATLQKYNVCRRHFLEFLQNDYRRADIKLSELTYTVIREFDIYLRTAVGQNANTATK 162

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ---P 192
            + + + +     +   +  +P L+  R   +       T E++ +  +      +    
Sbjct: 163 TMKTFKTIVILGQKMGVLHHDPFLN-HRFHLEPVNRGFLTDEEIMKIANKDFGIQRLELV 221

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248
           R  F F  ++GL   D       ++           K QKT     V L D   +++A  
Sbjct: 222 RDVFIFSCFTGLAYIDVSNLTPDNIVTLDDKQWIMTKRQKTSVEANVLLLDIPKRIIAKY 281

Query: 249 P-----IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301
                  GK    + N K        + + K  A   GV K  + H  R   AT+S   G
Sbjct: 282 SGKTYRDGKLFPILTNQKT-------NAYLKEIADLCGVKKNLTFHLARHTFATMSLSKG 334

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRI 329
                +    G   +   + Y +  ++ 
Sbjct: 335 VPMESVSKMLGHTNIKTTQIYARITNKK 362


>gi|58337077|ref|YP_193662.1| integrase [Lactobacillus acidophilus NCFM]
 gi|58254394|gb|AAV42631.1| integrase [Lactobacillus acidophilus NCFM]
          Length = 356

 Score = 79.7 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 68/358 (18%), Positives = 118/358 (32%), Gaps = 70/358 (19%)

Query: 13  KERTRHGKIIY----YF----RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64
           +  T  GK  Y    Y       GH  +IR                      K EYI   
Sbjct: 7   EYTTPSGKKRYGFNLYVGVDETTGHSIQIRKQGYKSKKEAQEAYLNYQLKIIKGEYIPES 66

Query: 65  RKKPTTLKWL----ISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHI 119
           +    T   L    +  YR++    + A  +R     YF D I+++ G     K+T    
Sbjct: 67  KGH-ITFNKLYEMWLKLYRETVKTSTYATTTR-----YFEDHILKQLGSKYIDKLTVLDC 120

Query: 120 RSGVE-SRKHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTK- 176
           +  V       P +  +F+     +  + +   E ++ NP   V  PK K E  +P+T  
Sbjct: 121 QKAVNIWFNDAPKTYKRFMRYTNNVLNYGINNLELISKNPMNKVIPPKAKNE-PKPFTDF 179

Query: 177 ---EDMQQFKSFWSE-GSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTG 230
              +++  F     E   +  + F  L YSG+R  ++       +  ++N  SI      
Sbjct: 180 YSKDELNTFLRNAKEYNFKYFVFFRLLAYSGMRKGEALALKWSDINFKDNTISIN----- 234

Query: 231 TIITVELPDGFMKLLAMTPIG-----------------------------------KETF 255
             +TV L +   +    T                                          
Sbjct: 235 KDVTVGLNNELYEDTPKTENSFRTLDMDATTMEYLKEWRLMQQKTMLELGYNFLNIDNLL 294

Query: 256 FINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYG 312
           F   +   ++ ++   W  A   K  + +   HG R   A++  +AGA+ +E+ A  G
Sbjct: 295 FPTINNGYLSMSKPRQWNVAICKKYDLRRIKIHGFRHTHASLLFEAGASMNEVKARLG 352


>gi|317498603|ref|ZP_07956896.1| phage integrase [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316894090|gb|EFV16279.1| phage integrase [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 396

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 47/348 (13%), Positives = 111/348 (31%), Gaps = 51/348 (14%)

Query: 15  RTRHGKIIYYFRKGHG---------RRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
             +     YYFR   G         ++ R  +  +      Y   +  ST +     + +
Sbjct: 6   IKKADNGTYYFRANLGYNPITGKQIQKYRSGFRTKKEAKEEYSKLVLASTEEL----TTK 61

Query: 66  KKPTTLKWLISE----YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121
           K   + +  I E    + K+     +  ++ ++  +   +        +  +I   H+++
Sbjct: 62  KDGVSFQQFIEETYLPWYKT----QVKESTYLNRATTIKKHFSYFYKMETDEIEPIHVQN 117

Query: 122 GVESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
                    +P+        + + F  A+       NP   +   K K   +  WT E+ 
Sbjct: 118 WQLKLAKDFSPNYIRIVQGMLSIAFDRAIVLGIAKKNPSRMIGNIKSKKTKVDFWTLEEF 177

Query: 180 QQFKS-FWSEGSQPR---LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------ 229
           Q+  S    +        ++F  L  +G+R  ++       +      +   KT      
Sbjct: 178 QKVISLLCKKDYYEHYLFISFWLLFMTGMRIGEASALHWSDIDFETGLLSITKTLYYRTM 237

Query: 230 -----------GTIITVEL-PDGFMKLLAMTPIGKET-----FFINNDKQKMNATQFSIW 272
                       +I T+ +  D   +L A   + ++        ++ +    + T     
Sbjct: 238 TDYKFVEPKTQASIRTIYIDSDTLNELKAWQSVQQQVLPDCPLVLSYNGTPTSKTTLPRA 297

Query: 273 FKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
            +  +  AGV++   H +R   A++    G     +    G + +   
Sbjct: 298 LEKLSNLAGVHRIKIHALRHSHASLLISMGENPLLIKERLGHEKIQTT 345


>gi|266619589|ref|ZP_06112524.1| integrase/recombinase, phage integrase family [Clostridium
           hathewayi DSM 13479]
 gi|288868877|gb|EFD01176.1| integrase/recombinase, phage integrase family [Clostridium
           hathewayi DSM 13479]
          Length = 279

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 45/248 (18%), Positives = 83/248 (33%), Gaps = 26/248 (10%)

Query: 89  VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAV 148
              R   +++F  +  K+     +++  ++ R      K T  SA   L ++   F +  
Sbjct: 27  EKYRRDVQAFFTWLPEKTEVS--KEMVLEYKRKLAAQYKST--SANSMLVALNRFFGFCG 82

Query: 149 RQEYVAINPCLSVERPKRKTEGIRPWTKED-MQQFK-----SFWSEGSQPRLAFEFLLYS 202
           R++         V   K +    R  ++E  ++++K     +   +  +  L  + L  +
Sbjct: 83  RRDL-------QVRLLKVQRVSFRERSREMSVEEYKRLVRAAREKKDERLSLLIQTLCST 135

Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL----AMTPIGKETFFIN 258
           G+R S+     V+ L++    I     G    V LP    K L        I     FI 
Sbjct: 136 GIRVSEHRCITVEALRSGSICI--DGKGKERAVFLPKKLQKQLKYYCKEKKITTGPVFIT 193

Query: 259 NDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGATAHELMATYGWKT 315
              + +N        KA    AG+       H +R   A            L    G   
Sbjct: 194 KSGKPLNRCNIWAEMKALCKNAGIEPQKVFPHNLRHLFALTYYRLEKDIVRLADILGHAN 253

Query: 316 VDQAETYT 323
           ++    YT
Sbjct: 254 IETTRIYT 261


>gi|254184903|ref|ZP_04891492.1| site-specific recombinase, phage integrase family [Burkholderia
           pseudomallei 1655]
 gi|184215495|gb|EDU12476.1| site-specific recombinase, phage integrase family [Burkholderia
           pseudomallei 1655]
          Length = 228

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 31/215 (14%), Positives = 64/215 (29%), Gaps = 39/215 (18%)

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA------ 195
           ++F  AVR+     NP   +   K +T+  R  T +++   ++     +  + A      
Sbjct: 1   MIFAHAVRRGLRDRNPAREIGSAK-ETKRDRYITDDELDTVRAAIVASADDKTASARSFL 59

Query: 196 --FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT----GTIITVELPDGFMKLLAMTP 249
              +    +  R  D      Q + ++  S +  +T    G  + +E+     + L    
Sbjct: 60  CLIDLAYQTAQRIGDLLALNWQDVSDDGISFRPSQTVNRSGVRLLIEMTPDLQETLNRAR 119

Query: 250 IGK----ETFFINNDKQKMNATQFSIWFKAKATKA-------------------GVNKSA 286
            GK          +   +         +K    +A                    +    
Sbjct: 120 GGKIASIGPVICAHAGGRYTYIGAYSGWKRACLRARSAYEKDWKKKGITPNPKYLIGMHF 179

Query: 287 HGVR-KFSATISADAGATAHELMATYGWKTVDQAE 320
           H +R K         GA A +  +  G  T +   
Sbjct: 180 HDLRAKALTDPKRQQGAAAAQ--SLAGHTTENMTA 212


>gi|168483688|ref|ZP_02708640.1| integrase [Streptococcus pneumoniae CDC1873-00]
 gi|172042968|gb|EDT51014.1| integrase [Streptococcus pneumoniae CDC1873-00]
          Length = 380

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 46/303 (15%), Positives = 105/303 (34%), Gaps = 46/303 (15%)

Query: 70  TLKWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHIRSGVESRK 127
           T + L  E+ +  +W   +  ++  + ++   +I+++  GD+  R I  + ++  ++   
Sbjct: 66  TFEKLYEEFEE--NWKHGVKNSTVYASKNVKKEILKQIEGDYLVRNIDRRLLQKVIDQLL 123

Query: 128 HTPSSAIQFLTS---MRVLFKWAVRQEYVAINPCLSVERPKR-------KTEGIRPWTKE 177
               S          +  + K+A+R  Y+  N  L VE P++       + +  +   ++
Sbjct: 124 QDGRSHNYVSKIKFKLNQIMKFAIRMNYIDTNEMLFVETPRKVITSDELRKKNTKYLDQK 183

Query: 178 DMQQF------KSFWSEGSQPRLAFEFLLY-SGLRCSDSCRAGVQ---HLQNNIFSIK-- 225
           + + F      ++         +    +L+ +G+R  +      +           IK  
Sbjct: 184 EFKLFIQNLKDEALCDYRITKYIRIAKVLFLTGMRYGELAALNYKEDIDFSKKTIHIKHT 243

Query: 226 ---------TQKT-GTIITVELPDGFMKLLAMTPIGKET-------FFINNDKQKMNATQ 268
                    T KT  +   +  P   + ++    I   T        FIN   + +   +
Sbjct: 244 YDFRQKERTTPKTIKSDRVITAPQKVLDIIKEQIIENATNGFDTDFIFINTLGEPITNAR 303

Query: 269 FSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKG 325
                K    K G+ K  + H  R    ++ A+ G     +M   G        E Y+  
Sbjct: 304 VICALKRHGQKIGIEKNITTHTFRHSHISLLAELGIPLTAIMDRVGHSDSKTTLEIYSHV 363

Query: 326 ADR 328
             +
Sbjct: 364 TQK 366


>gi|323700549|ref|ZP_08112461.1| integrase family protein [Desulfovibrio sp. ND132]
 gi|323460481|gb|EGB16346.1| integrase family protein [Desulfovibrio desulfuricans ND132]
          Length = 340

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 30/222 (13%), Positives = 72/222 (32%), Gaps = 15/222 (6%)

Query: 108 DFDYRKITTKHIRSGVESRKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
                K+  +            +PSS  +++T + V+F + V  EY+  NP  +  +   
Sbjct: 100 HAPIHKLKAEDFNVLALEYADLSPSSFNRYITYLNVMFNFGVEFEYIEKNPMAAWRKRVL 159

Query: 167 KTEGIRPWT--KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCS--DSCRAGVQHLQNNIF 222
           K E  R     K+D+    +          A   ++ +G R    +  +     +  +  
Sbjct: 160 KREKHRDLPIDKDDIDAILAHSPL--HVYKAIRLIMKTGCRPGKSELLKIKYSDVDFHNK 217

Query: 223 SIKTQKTGTIITVE----LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKAT 278
            ++ + T    +      L D   ++          + +    +      +   F+    
Sbjct: 218 LVRIRGTKAARSDRYVHLLDDILEEIREWQKTATSEYIVEYKGEP--VQSYIKAFRTAVK 275

Query: 279 KAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
            +G++K    + +R + A+      A    + +  G      
Sbjct: 276 NSGIDKKVVPYHLRHYFASSLIAKKADIKAVASVMGHSGPAM 317


>gi|167907527|ref|ZP_02494732.1| site-specific recombinase, phage integrase family protein
           [Burkholderia pseudomallei NCTC 13177]
 gi|242311038|ref|ZP_04810055.1| site-specific recombinase, phage integrase family [Burkholderia
           pseudomallei 1106b]
 gi|242134277|gb|EES20680.1| site-specific recombinase, phage integrase family [Burkholderia
           pseudomallei 1106b]
          Length = 228

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 30/215 (13%), Positives = 63/215 (29%), Gaps = 39/215 (18%)

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA------ 195
           ++F  AVR+     NP   +   K +T+  R  T +++   ++     +  + +      
Sbjct: 1   MIFAHAVRRGLRDRNPAREIGSAK-ETKRDRYITDDELDTVRAAIVASADDKTSSARSFL 59

Query: 196 --FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT----GTIITVELPDGFMKLLAMTP 249
              +    +  R  D      Q + ++  S +  +T    G  + +E+     + L    
Sbjct: 60  CLIDLAYQTAQRIGDLLALNWQDVSDDGISFRPSQTVNRSGVRLLIEMTPDLQETLNRAR 119

Query: 250 IGK----ETFFINNDKQKMNATQFSIWFKAKATKA-------------------GVNKSA 286
            GK          +   +         +K    +A                    +    
Sbjct: 120 GGKIASIGPVICAHAGGRYTYIGAYSGWKRACLRARSAYEKDCKKKGITPNPKYLIGMHF 179

Query: 287 HGVR-KFSATISADAGATAHELMATYGWKTVDQAE 320
           H +R K         GA A +  +  G  T     
Sbjct: 180 HDLRAKALTDPKRQQGAAAAQ--SLAGHTTESMTA 212


>gi|329769455|ref|ZP_08260866.1| hypothetical protein HMPREF0433_00630 [Gemella sanguinis M325]
 gi|328838786|gb|EGF88382.1| hypothetical protein HMPREF0433_00630 [Gemella sanguinis M325]
          Length = 411

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 47/289 (16%), Positives = 91/289 (31%), Gaps = 46/289 (15%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---------KH 128
           Y +S    ++  ++    +   + I  +  D   R I+ + +++               +
Sbjct: 89  YYQS----TVDKSTFSIKKKLLEDIRDRFSDTLLRSISLEQVQNYRIWLLTSEESGGPGY 144

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           + S A     + R    +A+   YV  N    V+   +    +  WTK + +   S    
Sbjct: 145 SQSYASLIFGAFRKSLDFALTMGYVEQNISKRVKAIPKGKATVPYWTKSEFEAVISKIYI 204

Query: 189 G-SQPRLAFEFL---LYSGLRCSDSCRAGVQHLQ-----------------NNIFS--IK 225
           G +   L F  L     +G+R ++ C      +                   N       
Sbjct: 205 GNTYEHLNFIMLWIYFMTGIRVNEGCALKWNDVDFKNKKLRIHNMLIIQSKENWTINPYT 264

Query: 226 TQKTGTII------TVELPDGFMKLLAMTPIGKE-TFFINNDKQKMNATQFSIWFKAKAT 278
             K G         T+ +   + K      +G E  F  + D   M  +  S      + 
Sbjct: 265 KTKNGKRTISLDSDTISILKKWKKTQKTIGLGNEDDFIFSYDGLPMIKSTISRIIARYSK 324

Query: 279 KAGVNK-SAHGVRKFSATISA-DAGATAHELMATYGWKTVDQA-ETYTK 324
            AGV K  A G+R   A+    +   +   L    G  + +   + Y+ 
Sbjct: 325 LAGVKKIQAKGLRHSHASYLINEFNISILILCKRLGHSSPEITLKHYSH 373


>gi|322390622|ref|ZP_08064137.1| phage integrase family site-specific recombinase [Streptococcus
           parasanguinis ATCC 903]
 gi|321142701|gb|EFX38164.1| phage integrase family site-specific recombinase [Streptococcus
           parasanguinis ATCC 903]
          Length = 421

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 51/356 (14%), Positives = 107/356 (30%), Gaps = 67/356 (18%)

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYR 112
              +  +         TL+ L   + ++      + N+      Y D  II K GD+   
Sbjct: 64  EFERNRFTRKENVSINTLEDLAEAWFQAYQTWVSSHNTLNRVRGYLDNYIIPKFGDYKPG 123

Query: 113 KITTKHIRSGVESRKHTPSS--------AIQ--------FLTSMRVLFKWAVRQEYVAIN 156
           KI +  I+  +                 A +         +  ++ +F + +    +  N
Sbjct: 124 KIESADIQLWLNDLAKKSKKSVESGVKRANKGCAKDFGAVIHKLKDIFDYGITNYGLTSN 183

Query: 157 PCLSVE---RPKRKTEGIRPWTKEDMQQFKSFWS------EGSQPRLAFEFLLYSGLRCS 207
           P  +++   +PK   + I     + + ++ ++           + +L    LL S LR +
Sbjct: 184 PVNTIKIPPKPKSSKQRIMVLHDDSLARWLNYLESLDNSRANRRFKLICNTLLASALRIN 243

Query: 208 DSCRAGVQHLQNNIFSIKTQKT-----------------------------GTIITVELP 238
           +     +  L     SI   KT                                + + + 
Sbjct: 244 ELLALTIDDLNFEESSISVNKTLLWKTANKKTGTKGKVICKATPKTDAGNRSIPVPLSIL 303

Query: 239 DGFMK--------LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGV 289
           +            L        +  F       M         K +    G+ +   H  
Sbjct: 304 EELRDFHNEMNEYLKLHNKPETKLIFPTIYGNYMCDRNERTTLKNRLAGLGLPDYGFHLF 363

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNS--RRISSV 342
           R   A++  +AG    EL    G K++    +TY + A + +L        +I+ +
Sbjct: 364 RHTHASMLLNAGTNWKELQVRMGHKSISTTMDTYAELAPQRKLEAVGIYLDKIAEL 419


>gi|298483404|ref|ZP_07001581.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           D22]
 gi|299148890|ref|ZP_07041952.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           3_1_23]
 gi|298270352|gb|EFI11936.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           D22]
 gi|298513651|gb|EFI37538.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           3_1_23]
          Length = 267

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 42/282 (14%), Positives = 93/282 (32%), Gaps = 27/282 (9%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           ++++++      +LA N+  S+       +   G+ + + +       G       P + 
Sbjct: 1   MVTKFKNHLVKTNLAKNTVTSYVWTVQYFLNHYGEVNKKNLLA---YKGYLVENFKPQTV 57

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI--RPWTKEDMQQFKSFWSEGSQ 191
              L  +    ++  +++         V+  K + +       +  D +  K+       
Sbjct: 58  NLRLQGINKYLEFTKQEKL-------KVKFVKVQQKNFLENVISDADYKFLKAQLKADGY 110

Query: 192 PRLAFE--FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM----KLL 245
               F   F+  +G R S+      +H+      +   K G +  + +P        K L
Sbjct: 111 EEWYFIVWFMTATGARVSELLHIKAEHINVGYLDL-YSKGGKVRRLYIPKNLRTEAEKWL 169

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGA 302
               +     F+N   Q++     +   K  A K G+NK     H  R   A    D   
Sbjct: 170 KNQGLTSGYIFLNRFGQRITTRGIASQLKHFAEKYGMNKEVVYPHSFRHRFAKNFLDRFN 229

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
               L    G ++++    Y +     R   +  + +  VV+
Sbjct: 230 DLALLADLMGHESIETTRIYLR-----RTASEQQKIVDKVVN 266


>gi|222080175|ref|YP_002540038.1| integrase/recombinase [Agrobacterium vitis S4]
 gi|221738820|gb|ACM39599.1| integrase/recombinase [Agrobacterium vitis S4]
          Length = 408

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 44/260 (16%), Positives = 77/260 (29%), Gaps = 23/260 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQ--FLTSMRV 142
             LA  +  ++       I   GD          IR+ +  R    S A        +R 
Sbjct: 133 RGLAETTLATYLGTITPFIDTLGDTP-AIYDAATIRAYMIERAKAVSVARMKGISVGIRA 191

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKT----EGIRPWTKEDMQQFKSFW--SEGSQPRLAF 196
             ++ +        P L    P           R     D+ +           + R   
Sbjct: 192 FLRFLIATGRCR--PGLDHAMPNVAGWRLASIPRFLPDADIARIIGACNGERRLRDRAII 249

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-----IITVELPDGFMKLLAM--TP 249
             L+  GLR S+  R G   +     SI+    G       +T E+ D  +  +      
Sbjct: 250 LLLVRLGLRASEVARLGFGDIDWRQGSIRLFGKGRREELLPLTQEIGDALLAYIERGRPA 309

Query: 250 IGKETFFINNDK--QKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATA 304
           +   + FI      + ++        K    + GV    K AH +R  +AT     G + 
Sbjct: 310 LAVPSLFITEYAPLRPIDRITVKCLVKRALKRGGVESHYKGAHILRHSAATAMLRHGVSL 369

Query: 305 HELMATYGWKTVDQAETYTK 324
             +      ++ +    Y K
Sbjct: 370 AHVGTVLRHRSPEMTAHYAK 389


>gi|266623421|ref|ZP_06116356.1| site-specific recombinase, phage integrase family [Clostridium
           hathewayi DSM 13479]
 gi|288864795|gb|EFC97093.1| site-specific recombinase, phage integrase family [Clostridium
           hathewayi DSM 13479]
          Length = 373

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 53/378 (14%), Positives = 103/378 (27%), Gaps = 72/378 (19%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKGH--GRRIRLPYPHESTFIPAYMSALTGSTPKREYI 61
             ++P +     T  G   Y  R     G+ + L            + A         + 
Sbjct: 5   KTQIPKY--GTITLKGIQYYRTRITDADGKELSLYAATCEELYEKQLEARKQVEEIIFHR 62

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIR 120
             P       KWL+ +   SA    ++ ++   +     + II+  G+    ++T   IR
Sbjct: 63  QHPTVAEYGEKWLLMQ---SAK---VSASTLRGYTRDMTNYIIKPLGEMYMEEVTADDIR 116

Query: 121 SGVESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI-RPWTKED 178
             +    K +     +    ++ +F  A R + +  NPC  +     K        T + 
Sbjct: 117 LALVPLSKKSEGLYNKVNMLLKCIFYTAERNQILEHNPCAGISGKGGKPTKKKEALTDQQ 176

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQ------- 227
           +         G  P L     LYSGLR  +        +         S++         
Sbjct: 177 VAVLLDTVK-GLPPYLFIMLGLYSGLRREEILALQWDCVFLDEDTPYLSVRRAWRTEHNR 235

Query: 228 -------KTG-TIITVELPDGFMKLLAMTPIG--KETFFINNDKQKMNATQFSIWFK--- 274
                  KT      + +P   +  L  T      +    ++  + + A+QF   ++   
Sbjct: 236 PVISTVLKTPAAKRDIPIPKCLVDCLRETKENSISDYVIADSKGEPLAASQFQRVWQYVV 295

Query: 275 ----------------------------------AKATKAGVNKSAHGVRKFSATISADA 300
                                                     + + H +R    T    A
Sbjct: 296 VRSTKPRNYYKYVNGESIKYTVTPTLGMTQKNQPKIKYTLDFDVTPHQLRHTYITNLLYA 355

Query: 301 GATAHELMATYGWKTVDQ 318
           G     +    G +    
Sbjct: 356 GVGPKTVQYLAGHENSKT 373


>gi|186474603|ref|YP_001863574.1| integrase family protein [Burkholderia phymatum STM815]
 gi|184198562|gb|ACC76524.1| integrase family protein [Burkholderia phymatum STM815]
          Length = 331

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 40/274 (14%), Positives = 82/274 (29%), Gaps = 36/274 (13%)

Query: 85  GSLAVNSRISFESYFDQI-------IRKSGD-FDYRKITTKHIRSGVE----SRKHTPSS 132
            +LA N++ S+      +        + S D      ++   +RS +      R  +  +
Sbjct: 23  RNLARNTQASYRDTLTLLLPYLSKDRKTSADRLTIDDLSPSLLRSFLAYLEKERGCSGVT 82

Query: 133 AIQFLTSMRVLFKW--AVRQEYVAINPCLSVERPKRKTEGIRPWT---KEDMQQFKS--- 184
               L ++  L ++      E+VA      +     +       T   K ++        
Sbjct: 83  RNTRLATIHSLARFIGMHSPEHVA--WSAEIRAIPFRKTPKATLTYMDKPEIDALLQVPD 140

Query: 185 -FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH-LQNNIFSIK-TQKTGTIITVELPDGF 241
                G +      F+  +G R  +     V   + +   S++   K        L    
Sbjct: 141 IRTPLGRRDYALLLFMYNTGARADEVAHLTVGDCVLHGSLSVRLVGKANKARWCPLWADV 200

Query: 242 MKLLAMTPIGKET---FFINNDKQKMNATQFSIWFKAKATKAGVN--------KSAHGVR 290
             +L     G+ T    F+N   Q +         +    +A            S H +R
Sbjct: 201 ADVLRPFVAGRATHDFVFLNRLGQPLTRFGIYGLVRRVVERAAETSPSLAAKQISPHCIR 260

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              A     +G   + + A  G  ++D    Y +
Sbjct: 261 HSCAVHLLRSGNDINTIRAWLGHVSLDTTNIYAE 294


>gi|265756480|ref|ZP_06090686.1| integrase [Bacteroides sp. 3_1_33FAA]
 gi|263233668|gb|EEZ19283.1| integrase [Bacteroides sp. 3_1_33FAA]
          Length = 407

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 41/254 (16%), Positives = 77/254 (30%), Gaps = 26/254 (10%)

Query: 90  NSRISFESYFDQIIRKSG-----DFDYRKITT---KHIRSGVESRKHTPSSAIQFLTSMR 141
           + R S  S  + +    G     D  +  +T    K  +  +  + ++ S+    L  ++
Sbjct: 127 SYRQSKTSQLN-LREFIGLRGMNDIAFEDLTEEFGKSYKLFLIGKGYSASNTNHNLCWLQ 185

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS---FWSEGSQPRLAFEF 198
            L   AV +  +  NP   V   K+ +   R  ++ D+                R  F F
Sbjct: 186 RLVYIAVDRGLLKFNPLEDVGYEKKGSPKRRHISRNDLLLIMETPMEDKALELARRMFVF 245

Query: 199 LLYSGLRCSDSCRAGVQHLQ-----NNIFSIKTQKTGTIITVELPDGFMKL--LAMTPIG 251
              +GL   D       H+            K  KT     + L     ++  L  T   
Sbjct: 246 SSLTGLAYVDLRNLYPHHIGMTADGRKYIREKRAKTNNEAFIPLHPIAEQIMSLYNTADD 305

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMA 309
            +  F  +     +       F +     G+N   +AH  R         +G +   +  
Sbjct: 306 SKPVFPLS-----SRDSMWFEFHSLGVALGINENLTAHVARHTFGVNMVTSGISMESIAK 360

Query: 310 TYGWKTVDQAETYT 323
             G   +   + Y 
Sbjct: 361 MMGHSNLRSTQVYA 374


>gi|195935158|ref|ZP_03080540.1| putative integrase [Escherichia coli O157:H7 str. EC4024]
 gi|326338901|gb|EGD62717.1| Putative integrase [Escherichia coli O157:H7 str. 1125]
          Length = 192

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 34/183 (18%), Positives = 55/183 (30%), Gaps = 16/183 (8%)

Query: 153 VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRA 212
           +  NPC  V +   K   +   T E      +      Q R+A E       R  D    
Sbjct: 1   MKNNPCKGVRKFSLKARTVYI-TDEQYAAIYA--EAIPQLRIAMEISYLCAARLGDVLEL 57

Query: 213 GVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT----PIGKETFFINNDKQKMNATQ 268
             Q + +    I+  KTGT    E        + +         E         K+ A  
Sbjct: 58  KWQDIMDKGIYIEQNKTGTKQIKEWSPRLRTAIQLARNVSSCTCEYVINTTKGGKVIAKT 117

Query: 269 FSIWFKAKATKA----GVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
            + W+      A    GV    + H + K       +   ++ +     G KT +Q   Y
Sbjct: 118 LNNWWNQAKRAAEQKVGVPFGCNFHDI-KAKGISDYE--GSSRDKQIFSGHKTENQVLIY 174

Query: 323 TKG 325
            + 
Sbjct: 175 DRK 177


>gi|194433856|ref|ZP_03066130.1| Rac prophage; integrase [Shigella dysenteriae 1012]
 gi|194417959|gb|EDX34054.1| Rac prophage; integrase [Shigella dysenteriae 1012]
          Length = 290

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 36/243 (14%), Positives = 74/243 (30%), Gaps = 47/243 (19%)

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
             +  T  +   ++  +  L ++A +  +++  P   V++ +R      P +K +     
Sbjct: 31  NKKGRTVRTVDNYIALLCSLLRFAYQSGFISTKPFEGVKKLQRNRIKPDPLSKTEFNALM 90

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG--- 240
               +G    L  +F +YSGLR  +      + +      +  ++  TI+ +  P     
Sbjct: 91  ES-EKGQSQNLW-KFAVYSGLRHGELAALAWEDVDFEKGIVNVRRNLTILDMFGPPKTNA 148

Query: 241 -------FMKLLAMTP-----IGKE-----TFFINNDKQK-------------------- 263
                      L          G       TF+     +                     
Sbjct: 149 GIRTVTLLQPALEALKEQYKLTGHHRKSEITFYHREYGRTEKQKLHFVFMPRVCNEKQKP 208

Query: 264 -MNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQA- 319
             + +     + A   +AG+ +    H  R   A     AGA    + +  G +T     
Sbjct: 209 YYSVSSLGARWNAAVKRAGIRRRNPYHT-RHTFACWLLTAGANPAFIASQMGHETAQMVY 267

Query: 320 ETY 322
           E Y
Sbjct: 268 EIY 270


>gi|323187627|gb|EFZ72934.1| prophage lambda integrase [Escherichia coli RN587/1]
          Length = 375

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 47/296 (15%), Positives = 93/296 (31%), Gaps = 35/296 (11%)

Query: 58  REYINSPRKKPTTLKWLISEYRKSAH----WGSLAVNSRISFESYFDQIIRKSGDFDYRK 113
            + I + + K  T    +  Y+         G + +N+          +  ++G      
Sbjct: 71  SDRIATSKGKAITTSTWLDRYQAIQEDRLKSGDIKLNTYKQKAKPVSLLRERAGLKLISA 130

Query: 114 ITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAI--NPCLSVERPKRKTE 169
           +  + I   ++       P  A    + +  +FK A     V    NP L+ ++P+RK  
Sbjct: 131 VDVRDIAQLLDEYISAGQPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRK-I 189

Query: 170 GIRPWTKEDMQQFKSFWSEGSQ-PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
             +  + E+ ++         +    A    L +G R  D  +     +  +   +  +K
Sbjct: 190 SRQRLSLEEWKKIFDIADAAHRYMGNAMLLALVTGQRLGDISKMKFSDIWEDHLHVIQEK 249

Query: 229 TGTIITVELPDGFMKL------------LAMTPIGKETFFINN----DKQKMNATQFSIW 272
           TG+ I + L      +                      FF          ++ A   ++ 
Sbjct: 250 TGSKIAIPLSLRLNAINWCLRDVVARCRDYAVSPYLVHFFRTTSQAERGAQVKANTLTMN 309

Query: 273 FKAKATKA------GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           F      A      G   + H  R  S  +  + G    +L    G KT  Q + Y
Sbjct: 310 FSKARDLAEIDWGTGTPATFHEQRSLSERLYKEQGIDTRKL---LGHKTQQQTDRY 362


>gi|256838475|ref|ZP_05543985.1| integrase [Parabacteroides sp. D13]
 gi|256739394|gb|EEU52718.1| integrase [Parabacteroides sp. D13]
          Length = 419

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 45/272 (16%), Positives = 96/272 (35%), Gaps = 29/272 (10%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQ------IIRKSGDFDYRKITTKHIRSG-VESRKH 128
            +Y K    G  A  + + +++ +        I  +  D   +++T   I    +  R  
Sbjct: 126 EDYEKQVDAGMKAKGTLLKYKTVYKHLQEFLTIRYRVKDIALKELTPAFISDFEMFLRTD 185

Query: 129 TPSSAIQF---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
                      +  +R +   A+  E++  +P    E  K +T      TKE+++     
Sbjct: 186 KYCCTNTVWLYVCPLRTMVFIAINNEWLTRDPFREYEIKKEETT-RSFLTKEEIRLLMDG 244

Query: 186 WSEGSQPRLAFEFLLY---SGLRCSDSCRAGVQHLQN-----NIFSIKTQKTGTIITVEL 237
             + ++  L  +  L+   +GL  +D      +++          +I  QKTG +  + L
Sbjct: 245 RLKNAKQELYRDLYLFCAFTGLSFADMRNLTEENIHTYFDEHEWININRQKTGVVSNIRL 304

Query: 238 PDGFMKLLA--MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFS 293
            D   +++       G    F                 ++ A + G+ K  + H  R  +
Sbjct: 305 LDIAKRIIDKYRGLCGNGRIFPVPH-----YNTCLAGIRSVAKRCGITKHITWHQSRHTA 359

Query: 294 AT-ISADAGATAHELMATYGWKTVDQAETYTK 324
           AT +    G     + +  G K++   + Y K
Sbjct: 360 ATTVFLSNGVPIETVSSMLGHKSIKTTQIYAK 391


>gi|238920205|ref|YP_002933720.1| prophage lambda integrase [Edwardsiella ictaluri 93-146]
 gi|238869774|gb|ACR69485.1| prophage lambda integrase [Edwardsiella ictaluri 93-146]
          Length = 377

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 45/356 (12%), Positives = 110/356 (30%), Gaps = 46/356 (12%)

Query: 9   PFVTKERT-RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY------- 60
           P +  +   R G++ + ++            +          A      +R         
Sbjct: 13  PNLYSKLDKRTGRVYWQYKHPVTGNFHSLGTNTEEAKQVASEANDIIAEQRTRQILSVNE 72

Query: 61  ---INSPRKKPTTLKWLISEYRKSAHWG----SLAVNSRISFESYFDQIIRKSGDFDYRK 113
                   ++  T+   +  Y +          + +NS    +   + + + SG    + 
Sbjct: 73  KIARMRESREFITVTTWLDRYLEIQQERLESGEIKINSVKQKKKPVELLRQCSGMLYLKD 132

Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMRV--LFKWAVRQEYVAI--NPCLSVERPKRKTE 169
           +T   +   +++ K    S +  +  M +  +FK A    +V    NP  + ++P R   
Sbjct: 133 VTALEVAEIIDAVKAQGHSRMAQVVRMAIIDVFKEAQHAGHVPPGYNPAQATKQP-RNRV 191

Query: 170 GIRPWTKEDMQQFKSFWSEGSQ-PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
             +  + ++ +   S         + A    L +G R  D        + +++  +  +K
Sbjct: 192 MRQRLSLDEWKTIYSAAERHPPYLQCAMLLALVTGQRIGDISNMKFSDIWDDMLHVTQEK 251

Query: 229 TGTIITVELPDGFMKL--------LAMTPIGKETFFIN--------NDKQKMNATQFSIW 272
           TG  + + L    + L                  + ++            +++    +  
Sbjct: 252 TGARLAIPLALTCVALNISLRDVVTQCRDAVLSQYLVHFRHTTSQATRGDRVSPNAITTT 311

Query: 273 FKAKATKAGVNK------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           FK    ++G+        + H  R  S  +  + G    E     G K+    + Y
Sbjct: 312 FKKARNRSGITWPEGTAPTFHEQRSLSERLYREQGL---ETQKLLGHKSQKMTDKY 364


>gi|170019276|ref|YP_001724230.1| integrase family protein [Escherichia coli ATCC 8739]
 gi|169754204|gb|ACA76903.1| integrase family protein [Escherichia coli ATCC 8739]
          Length = 401

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 46/309 (14%), Positives = 97/309 (31%), Gaps = 17/309 (5%)

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYR 112
              ++E          + K +  ++  +      + +      S  ++ +    G     
Sbjct: 88  EEARKEKAIDALNMAASFKTVAEDWLAT-RVSGWSESYTKQVRSALEKDVYPVLGKRSIV 146

Query: 113 KITTKHIRSGVESRKHT-PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE-RPKRKTEG 170
            IT + + S ++ ++ T P  A +    +  +FK+AV  E V  NP   ++   K +  G
Sbjct: 147 DITARDVLSLLQKKERTAPEQARKLRQRIGEIFKFAVITELVNRNPVADLDTALKARRPG 206

Query: 171 IRPW-TKEDMQQFKSFWSEGS--QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-- 225
              W    ++  F          Q + A   L+ + LR ++      + +     +I   
Sbjct: 207 HNAWIPISEIPAFYKALERAGSVQIQTAIRLLILTALRTAELRLMRWEWVDLESATITLP 266

Query: 226 --TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
               K      V L    ++LL                + M+    +        + G  
Sbjct: 267 AEVMKARRPHVVPLSRQAVELLQDQFTRSGYSAFVFPGRFMDKPLSASAILKALERIGYK 326

Query: 284 --KSAHGVRKFSATISADAGATAHE-LMATYGWKTVDQAETYTKGA---DRIRLGIKNSR 337
              + HG R   +T   ++G    + +              Y + A    R  +    S 
Sbjct: 327 SIATGHGWRTTFSTSLNESGRYNPDWIEIQLAHVPKGVRGVYNQAAYLKQRRAMMQNYSD 386

Query: 338 RISSVVDSD 346
            I  ++  D
Sbjct: 387 AIDQILAGD 395


>gi|90961706|ref|YP_535622.1| Phage integrase [Lactobacillus salivarius UCC118]
 gi|90820900|gb|ABD99539.1| Phage integrase [Lactobacillus salivarius UCC118]
 gi|300214507|gb|ADJ78923.1| Phage integrase [Lactobacillus salivarius CECT 5713]
          Length = 373

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 27/290 (9%), Positives = 82/290 (28%), Gaps = 42/290 (14%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF 136
            + ++    S++  +++++++ F+ + +  G     ++  +  R  +         A   
Sbjct: 67  SWFETYKESSVSERTKLTYKNTFNVLKKHLGGIPIEEMDRRLYRKFIAEFGK--DHAKST 124

Query: 137 LTSMRVLFKWAVRQEYVAINPCLS------VERPKRKTEGIRPWTKEDMQQFKSFWS--- 187
           ++    L+   V+      +          +   ++KT  I     E+ ++  ++ +   
Sbjct: 125 VSKFNSLYHACVKDAMYDGDMTKDFIAGTDIVYNRKKTRKIDYLNIEETKKLTNYLTDTL 184

Query: 188 -EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-----------SIKTQKTGTIITV 235
                 +      + +G R  +      + +  +               +  K  +   +
Sbjct: 185 NHNFTAKYMILLAIATGARLGEMQALTWKDINFHTIDINKSWNETTKKFQPTKNESSKRI 244

Query: 236 EL-----PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAH 287
                   D    L        +  FIN       ++  +   +    + G++K     H
Sbjct: 245 IRVNQNTLDYLQDLKQN---NHDMVFINQYNTIPTSSAVNKTLRMCLKELGIDKPSFHFH 301

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAET--------YTKGADRI 329
            +R              + +    G   +             Y   AD  
Sbjct: 302 SLRHTHVAYLLSENIDLYIISKRLGHSDISTTSRVYSYLIDEYKNRADNK 351


>gi|325918846|ref|ZP_08180926.1| hypothetical protein XVE_4958 [Xanthomonas vesicatoria ATCC 35937]
 gi|325534937|gb|EGD06853.1| hypothetical protein XVE_4958 [Xanthomonas vesicatoria ATCC 35937]
          Length = 330

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 49/306 (16%), Positives = 89/306 (29%), Gaps = 63/306 (20%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQII-------RKSGDFDYRKITTKHIRSGVESR 126
           +I  +  S  +  LA  ++  +  Y   I           GD    ++T   IR  V+  
Sbjct: 1   MIDLFEGSLTFAQLASTTQQHYRDYAKAIRLYPLKNGTMLGDAVVDRLTPGVIRRLVDVI 60

Query: 127 KHT--------------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK--RKTEG 170
            H               P+ A  +L  +R +F WA   ++V  NP   V++ K  R    
Sbjct: 61  AHGRPAEKPGQKDVPGYPTKANHWLRYLRRVFGWAREHDHVQTNPASGVKQVKERRAHRM 120

Query: 171 IRPWTKEDMQQFKSFWS-EGSQPRLAFEFLLYSG--------LRCSDSCRAGVQHLQNNI 221
            +P     +Q +    S  G + + A    L++         LR  +       H     
Sbjct: 121 PKPEVFRAVQAYARECSTRGPREKGAVPLYLWAAMELAYQARLRGIEVLTLTDAHDVGQE 180

Query: 222 FSIKTQKTGTIITVELPDGFMKLLAMTPI-----------------GKETFFINNDKQKM 264
                +K      V       + +                       +   F+  D   +
Sbjct: 181 LMTNRRKGSRDNLVRKGGPLTEAIQALQTYRFNVWQRQKRPVPLDASERYLFVGEDGGPL 240

Query: 265 NATQFSIWFKAKATKAGVNK--------SAHGVRKFSATISADAGATAHELMATYGWKTV 316
             + F+  ++     A  +         + HG++    T       T  +     G KT 
Sbjct: 241 TRSGFNTSWQRLMKNALRDGVLVEADRFALHGLKHRGVTD------TDGDKKLASGHKTD 294

Query: 317 DQAETY 322
                Y
Sbjct: 295 AMLHVY 300


>gi|325971649|ref|YP_004247840.1| integrase [Spirochaeta sp. Buddy]
 gi|324026887|gb|ADY13646.1| integrase family protein [Spirochaeta sp. Buddy]
          Length = 432

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 64/373 (17%), Positives = 116/373 (31%), Gaps = 62/373 (16%)

Query: 26  RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYR-----K 80
           R+G   +++     +S     Y   L  +   +  +   + K  T       +      +
Sbjct: 67  RRGRNIQVQFKG-SDSWISSGYSDELNATLWAQNRVRENKSKDITFGEFSENFYTRTDER 125

Query: 81  SAHWGSLAVNSRISFE---------SYFDQIIRKSGDFDYRKITT-------KHIRSGVE 124
           S    ++  N    +E          Y + I+    D   R I           IR    
Sbjct: 126 SFRAKNMRKN--RHYENHYYYSMDGRYRNYILPIFKDLYMRNIDHMMIDEWFVSIRKATS 183

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF-- 182
             K   +S  + L  +  + K AV    +  NPC  V++    +   +P+T+E+M     
Sbjct: 184 GEKMATNSMNKILMCLSNIMKEAVNVGIIDTNPCSKVDKISEDSNPRQPFTEEEMLIMFP 243

Query: 183 ----KSFWSEGSQPRLA-FEFLLYSGLRCSDSCRAGVQHLQNNIF--------------- 222
               K+ W  G     + F  +  +G R  +       +    +                
Sbjct: 244 DFDHKAIWVWGGLMWASYFHIMKCTGFRPGEIAGLTRDNYYRELGGIYTSQSVNSFTKNV 303

Query: 223 --SIKTQKTGTIITVELPDG-----FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKA 275
              IKT   G    + L            +A  P  +E  F          T     FK+
Sbjct: 304 VKRIKTTDKGIKAKIGLLSDQCCRLLDLHIARMPKDQEFLFRVETGYVTAFTSQKH-FKS 362

Query: 276 KATKAGV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
            ATKAG+    ++ + +R    T+ A        +    G       + Y   A + RL 
Sbjct: 363 FATKAGIELNGRTQYSLRHTFQTMIA-GEVEKSHVEELMGHTKYR--QDYDHRAGKKRLE 419

Query: 333 IKN--SRRISSVV 343
                  R+S+++
Sbjct: 420 QLQGLRDRLSNII 432


>gi|309779754|ref|ZP_07674511.1| phage integrase [Ralstonia sp. 5_7_47FAA]
 gi|308921493|gb|EFP67133.1| phage integrase [Ralstonia sp. 5_7_47FAA]
          Length = 456

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 52/326 (15%), Positives = 102/326 (31%), Gaps = 46/326 (14%)

Query: 32  RIRLPYPHESTFIPAYMS----ALTGSTPK-REYINSPRKKPTTLKWLISEYRKSAHWGS 86
           R+ L   +    + + ++    A +GS P           K  +   ++  Y       +
Sbjct: 93  RLGLREKYAQEAVNSVLAHSAHASSGSLPVGMPQGERVTPKSQSFSEVVKLYLVEKKLDN 152

Query: 87  LAVNSRISFESYFDQIIRKSGDFDYRKI---TTKHIRSGVESRKHTPSSAIQFLTSMRVL 143
           +   +    E  +++     GD D  +         ++ + +   + S     L+ +R L
Sbjct: 153 V-PKTLYDKERIYNEFQGFYGDLDINQYTLNEAVSYKNRILAEGKSASIINSRLSFLRSL 211

Query: 144 FKWAVRQE-YVAINPCLSVE-----RPKRKTEGIRPWTKEDM------QQFKSFWSEGSQ 191
           F++A+    Y A NP   V+     + K++    +  T ED+      + ++ F      
Sbjct: 212 FEYAIGNNLYFAANPFEKVKISNRTKLKQQVRSYKELTTEDLQAIFNEEAYRPFMDTPDY 271

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQK-----TGTIITVELP------ 238
             L F   LYSG+R ++       H+     ++     K       +I  V L       
Sbjct: 272 YWLPF-LALYSGVRQNELASMRFYHICQHEGVWVFDITKEIAKNKKSIRKVPLHKVILES 330

Query: 239 ---DGFMKLLAMTPIGKETFFI-----NNDKQKMNATQFSIWFKAKATKAGVN---KSAH 287
              D   +  A    G E  F          +       S  F        +    K+ H
Sbjct: 331 KFLDYLEQTKATRKAGYEMVFFPDKLPTEGGKNGFGKNISRRFGDYLDLLKITDDRKTFH 390

Query: 288 GVRKFSATISADAGATAHELMATYGW 313
            +R        +       +M   G 
Sbjct: 391 SLRSNFINEMTNLNIHPAIIMGLVGH 416


>gi|309793932|ref|ZP_07688357.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 145-7]
 gi|308122339|gb|EFO59601.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 145-7]
          Length = 491

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 55/354 (15%), Positives = 101/354 (28%), Gaps = 80/354 (22%)

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFES-------YFDQI-IRK 105
             P+         K  TL  LI +Y +     +    +     +        FD + I+ 
Sbjct: 127 EVPEPLVTLERVTKALTLASLIEQYEQENA-QNWKPATLSENRASHSTLIEIFDYLDIQD 185

Query: 106 SGD------FDYRKITTKHIRSGVESRKHTPSS-----------------AIQFLTSMRV 142
            G          R++  +  ++  +  K  P S                   ++L  M  
Sbjct: 186 VGKATRADMLRVREVLQQLPKNRKQRFKDIPLSDLLNRESKTDCLDVVTINNKYLIKMAA 245

Query: 143 LFKWAVRQEYVAINPCLSVERP---KRKTEGIRPWTKEDMQQFKSFWSEGSQ-------P 192
           +FKWAVR + +A N    +E     ++ ++    ++ E ++Q        SQ        
Sbjct: 246 VFKWAVRNDLIAKNLTEGLELKVPQRKASDARDAFSPEQVRQLLVAAKAYSQKTSGKPYH 305

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNN-----IFSIK------TQKTGTIIT----VEL 237
                    +G R ++  +  V+ ++          I         K+         V L
Sbjct: 306 YYVTALAAITGARLNEVAQLQVKDVRTTEAGTVFIHINEDDSSLPGKSIKNAHSDRCVPL 365

Query: 238 PDG-----------FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284
            DG            ++    T       F   D  K+    +         +  + K  
Sbjct: 366 VDGAYGFVLADFMSLVEDRRKTAGDNAMVF---DGLKLMKNGYGEQVSKWFNRTLLPKVL 422

Query: 285 ------SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRL 331
                 + H  R   AT     G       A  G  +     + Y K  +  RL
Sbjct: 423 ADRSGLAFHSFRHTVATQLKQHGVELAYAQAIMGHSSGSITYDRYAKEVEVDRL 476


>gi|330465125|ref|YP_004402868.1| integrase family protein [Verrucosispora maris AB-18-032]
 gi|328808096|gb|AEB42268.1| integrase family protein [Verrucosispora maris AB-18-032]
          Length = 405

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 41/248 (16%), Positives = 79/248 (31%), Gaps = 34/248 (13%)

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           +P+S     T +R L   A+ +  +  N    V+ P  +    + WT ++ ++F      
Sbjct: 159 SPTSVTHLRTVLRTLLSQAITEGLITRNVVSLVKLPPVRKRKRKAWTSDEARRFLESARA 218

Query: 189 GSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI---------------KTQKT-GT 231
              P   A+  +L  GLR  +        +  +   +               +  KT  +
Sbjct: 219 DDDPLYAAYVLVLVLGLRKGEMLGLTWADVDLDAGELTIDRQLQRVGAELLHRETKTAAS 278

Query: 232 IITVELPDGFMKLLAMTPIG-------------KETFFINNDKQKMNATQFSIWFKAKAT 278
             T+ LPD     L                    +  F     + +    F+ ++  +  
Sbjct: 279 DATLPLPDICTVALGRRAAQISARDAAGPAWQPSDLIFTTRYGRPVEPRNFNRFWDRRCD 338

Query: 279 KAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNS 336
            AGV + +    R+  A++ AD        M            E YT  +          
Sbjct: 339 AAGVRRITVRDARRTCASLLADLDVHPRVAMQILRHAQFAITMEIYTVVSSTA--TRDAL 396

Query: 337 RRISSVVD 344
           +R+ S +D
Sbjct: 397 KRLGSALD 404


>gi|325268476|ref|ZP_08135106.1| integrase [Prevotella multiformis DSM 16608]
 gi|324989004|gb|EGC20957.1| integrase [Prevotella multiformis DSM 16608]
          Length = 414

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 47/292 (16%), Positives = 98/292 (33%), Gaps = 27/292 (9%)

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
           +   + +  ++K  + + R    + +L  + ++  E   D+ +         +   +  R
Sbjct: 105 LAMSKAELQSVKECVGKSRAEGTYQNLFYSDKLLTEFVKDKGMTDIAITTITEDLFEEYR 164

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
             ++ R    ++  ++L  +  L   AV Q  +  NP  + +  K + + IR   K ++ 
Sbjct: 165 FYLKKRGLATATMNRYLCWLSRLMYRAVSQRLIRCNPFENAKHEKAEQK-IRFLQKSEVS 223

Query: 181 ---QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---NNIFSIK--TQKTGTI 232
                +    E  Q R  F F  ++GL  +D       H+Q   +    I+   QKT   
Sbjct: 224 KLMALRVIDKEAEQARRMFIFACFTGLAIADMEHLQFGHIQTAADGQKYIRKERQKTKVE 283

Query: 233 ITVELPDGFMKLL-------------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATK 279
             V L      ++                     +F    +    + +  S+        
Sbjct: 284 FIVPLHPIAEAIINQCKKEQPSMKEMQTVKDKDNSFIFRTN---CSRSVMSVKLSIVGKA 340

Query: 280 AGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            G+    S H  R    T+S  AG     +    G  ++   + Y +  D  
Sbjct: 341 CGIRERLSYHMARHTFGTMSLSAGIPIESIAKMMGHASISSTQIYAQVTDNK 392


>gi|300957406|ref|ZP_07169620.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 175-1]
 gi|300315841|gb|EFJ65625.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 175-1]
          Length = 397

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 56/342 (16%), Positives = 114/342 (33%), Gaps = 39/342 (11%)

Query: 19  GKIIYYFRK-----------GHGRRIRLPYPHESTFIPAYMSALT-GSTPKREYINSPRK 66
           GK ++ FR            G G    L           Y++ L  G  P+ +   +  +
Sbjct: 39  GKKLWRFRYQRPATKQRTMMGLGAFPALSLADARGLRANYLALLANGIDPQIQAEVAEEQ 98

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNS------RISFESYFDQIIRKSGDFDYRKITTKHIR 120
           +   L  + S    +A+W  L   S      +  + S    +    G+   ++I  + + 
Sbjct: 99  QQIALDSIFST--VAANWFQLKSKSVTPDYAKDIWRSLEKDVFPAIGEIPVQQIKARTLV 156

Query: 121 SGVESRKHTPS--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP--KRKTEGIRPWTK 176
             +E  K   +  +  + +  +  +  +AV    +  NP   V     K K + +     
Sbjct: 157 EALEPIKARGALETVRRLVQRINEIMIYAVNTGLIDGNPASGVGMAFEKPKKQNMPTLRP 216

Query: 177 EDMQQFKSFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKT 229
           E++ +        +     R   E+ L + +R S++       +              K 
Sbjct: 217 EELPKLMRSLVMSNLSVPTRCLIEWQLLTIVRPSEASGTQWSEIDFEAKLWTIPAERMKA 276

Query: 230 GTIITVELPDGFMKLLAM-TPIGKETFFI----NNDKQKMNATQFSIWFKAKATKAGVNK 284
                V L    +++L +  PI      +    N+ KQ MN+   +   K       +  
Sbjct: 277 KREHIVPLSPQALEVLEVMKPISAHRVHVFPSRNDPKQPMNSQTANAALKRIGYNGKL-- 334

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAET-YTKG 325
            AHG+R  ++T   +A   A  + A       ++    Y + 
Sbjct: 335 VAHGLRSIASTAMNEACFNADVIEACLAHSDKNEVRRAYNRS 376


>gi|117928754|ref|YP_873305.1| phage integrase family protein [Acidothermus cellulolyticus 11B]
 gi|117649217|gb|ABK53319.1| tyrosine recombinase XerC subunit [Acidothermus cellulolyticus 11B]
          Length = 336

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 33/314 (10%), Positives = 90/314 (28%), Gaps = 59/314 (18%)

Query: 70  TLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSG 122
           +L   +  + +   +  SL+ ++  ++ +    ++  +     R+         +   + 
Sbjct: 6   SLGTAVELFARHLQYERSLSSHTVRAYLTDLRDLVDHAERLGCREPADLTVAVLRSYLAK 65

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           +++     ++  +   + RV   +  ++ +++ +P   +  PK         T+   +  
Sbjct: 66  LDTVGRARTTIARRAAAARVFTAYCSKKGWMSHDPGRRLGTPKVVRPLPDVLTQAQARAV 125

Query: 183 KSFWSEGS---------------------------------------QPRLAFEFLLYSG 203
                + +                                       + R   E L  +G
Sbjct: 126 LERAEQRAGPDAEADAGAIGVPEDAREDAGAANAAQDVDTISLARRLRDRAILEVLYATG 185

Query: 204 LRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM----------TPIGK 252
           +R  +        +      I    K     TV +    ++ +            T    
Sbjct: 186 IRVGELVALETDDIAWVRAVIHVIGKGNKERTVPIGQPALRAVEQWLRHGRPAFQTGASG 245

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATK--AGVNKSAHGVRKFSATISADAGATAHELMAT 310
              F+    ++++  +      A             HG+R  +AT   + GA    +   
Sbjct: 246 SAIFLGVRGRRIDPREVRRVVYAATRDLPDAPRLGPHGLRHSAATHLLEGGADLRSVQEI 305

Query: 311 YGWKTVDQAETYTK 324
            G  T+   + YT 
Sbjct: 306 LGHATLATTQLYTH 319


>gi|315165597|gb|EFU09614.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX1302]
          Length = 376

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 48/296 (16%), Positives = 97/296 (32%), Gaps = 43/296 (14%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
            +     YRK    G L+ ++        D   +   D   +++T +  +  +     T 
Sbjct: 66  FRNWFEVYRK----GKLSQDNDGDIRRAVDFSEKYFPDTKLKELTRQEYQKALNDYGETH 121

Query: 131 SSA--IQFLTSMRVLFKWAVRQEYVAINPC---LSVERPKRKTEGIRPWTKEDMQQFKSF 185
           ++A   +  T MR   K A+ +  +  NP     ++ +   K E ++    ++       
Sbjct: 122 ATASVKKHHTYMRAALKDALEEGIIHRNPTYRVQAIGKKNPKHEELKYLNYQESIHLVHE 181

Query: 186 WSEGSQP----RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG----------- 230
             EG +P    R    F + +G R S+        +     ++K  KT            
Sbjct: 182 ILEGIKPTYTSRFIILFGIATGCRFSEIIGMTWDCIDFKNKTVKVNKTWDYKYTNTFSNT 241

Query: 231 ----TIITVELPDGFMKLLAMTP-------------IGKETFFINNDKQKMNATQFSIWF 273
               +   + + D  + LL                       F+N++ + ++ T  +   
Sbjct: 242 KNYQSKRIITIDDDTLDLLKKLQLHQKEYYLKSGLRNENNLVFLNDNMELVSNTAVNKVL 301

Query: 274 KAKATK-AGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGAD 327
           +    K      + HG+R   A+I    G     +    G K +    +TY    D
Sbjct: 302 RKFCRKICTKELTCHGLRHTHASIMLYKGINIKYVSRRLGHKDIVTTLQTYQHILD 357


>gi|270292637|ref|ZP_06198848.1| integrase/recombinase, phage integrase family [Streptococcus sp.
           M143]
 gi|270278616|gb|EFA24462.1| integrase/recombinase, phage integrase family [Streptococcus sp.
           M143]
          Length = 219

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 21/193 (10%), Positives = 67/193 (34%), Gaps = 6/193 (3%)

Query: 57  KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT 116
           +R  ++  +++  +   L+  +  +      +  +   ++   + +          ++TT
Sbjct: 29  ERHLVDGKKQQKYSNNNLLQLFITAKQVEGCSAKTIRYYQRTIENLFHDI-KESVTQLTT 87

Query: 117 KHIRSGVESRKH----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
             +RS + + +     + ++       +   F W  ++EY+  NP   +++ K +     
Sbjct: 88  DDLRSYLANYQSEKDCSKANLDNIRRILSSFFAWLEQEEYIIKNPIRRIKKIKTEQTVKE 147

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
            +T E ++  +    E  +     + L  +G+R  +  +     +            G  
Sbjct: 148 TYTDEHLEIMRDNC-ENLRDLAMIDLLASTGMRVGELVQLNRSDIDFENRECVVFGKGKK 206

Query: 233 ITVELPDGFMKLL 245
               +     K +
Sbjct: 207 KDPYILMLVRKFI 219


>gi|30065733|ref|NP_839878.1| Int [Yersinia phage L-413C]
 gi|293417378|ref|ZP_06660002.1| phage integrase family site-specific recombinase [Escherichia coli
           B185]
 gi|30025927|gb|AAP04466.1| Int [Yersinia phage L-413C]
 gi|291430898|gb|EFF03894.1| phage integrase family site-specific recombinase [Escherichia coli
           B185]
          Length = 326

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 45/307 (14%), Positives = 101/307 (32%), Gaps = 23/307 (7%)

Query: 26  RKGHGRRIRLPYPHESTFI--PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAH 83
           R   G+RIR  +  ++  +    Y  A       ++     R    TL  L+  + K  H
Sbjct: 18  RGRDGKRIRRKFERKAEALAFERYTIA----NASQKEWGGQRADRRTLSELLDIWWK-YH 72

Query: 84  WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK---HIRSGVESRKHTPSSAIQFLTSM 140
             +    ++    ++  + I   GD    +++ +     RS       + ++  + +  +
Sbjct: 73  GQNHEHGTKEF--NHLLKTISGIGDIPVSRMSKRALMDYRSIRLRDGISAATINRDMYRL 130

Query: 141 RVLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199
             +F   ++  E+   +P   +         +    K ++++  +  +      L     
Sbjct: 131 SGMFTKLIQLDEFSGQHPIHGLPPLAEANPEMTFLEKAEIEKLLNVLA--GDDLLVALLC 188

Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN 259
           L +G R ++        + N   +    K G   TV + +   K +      K       
Sbjct: 189 LSTGGRWTEVATLKPAQITNCRVTFLKTKNGKKRTVPISEELEKKVKEEASAKLF----- 243

Query: 260 DKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
              K++  +F    +        N++ H +R   A+     G     L    G  ++ Q 
Sbjct: 244 ---KVDYEKFCGILRRVKPDIPPNQATHILRHTFASHFMMNGGNIIALQQILGHASIQQT 300

Query: 320 ETYTKGA 326
             Y   A
Sbjct: 301 MAYAHLA 307


>gi|326562759|gb|EGE13057.1| phage integrase [Moraxella catarrhalis 46P47B1]
          Length = 411

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 61/372 (16%), Positives = 113/372 (30%), Gaps = 47/372 (12%)

Query: 13  KERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           + +   GK  +    G G    +        +    + L     +   I +P     T K
Sbjct: 49  RYKDAKGKWRW---HGLGAYPAVTGAMARKLVQEKFADLALGLDELTAIPAP-PTAQTFK 104

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
            +  E+        L   ++  + S  +  I    G      I+ +   +     + TP+
Sbjct: 105 SVALEWYNEPSIQKLDDGTKSKYLSLLEKHIFPTMGKKAIGDISRQVWLTFFRKLQETPN 164

Query: 132 ---------SAIQFLTSMRVLFKWAVRQEY--VAINPCLSVERPKRKTEGIRPWTKEDM- 179
                    +A + L     ++++A+ QE   V  NP   +E    + E   P     + 
Sbjct: 165 PQTGKPIIETANRALQVCSRIYRFALTQELAGVEFNP---LEHLHERLEKHEPKQLAHVS 221

Query: 180 --QQFKSFWSEGSQP----RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI----KTQKT 229
                K      + P    RL  + L +  LR ++        +  N           K 
Sbjct: 222 EQDLHKLLLDIKTIPSEITRLGVQLLSHLFLRPNEVLDGEWAEIDFNKGIWEIPAHRMKK 281

Query: 230 GTIITVELPDGFMKLLAMTPI---GKETFFINNDKQKMNATQFSIWFKAKATKAGVN--K 284
                V L    + LL             F +  K + NA      F+    + G +  +
Sbjct: 282 RRPHVVPLSKQALALLQQLHSLTGFDTHLFPSRAKDRKNAH---QRFRMALNRLGYHDTQ 338

Query: 285 SAHGVRKFSATIS----ADAGA--TAHELMATYGWKTVDQAETYTKGA---DRIRLGIKN 335
           + HG R  ++T       + G       +      K    A  Y K     DR  +    
Sbjct: 339 TLHGFRHVASTKLNNYTDENGKKFDGRVIEFALAHKVQGVAGVYNKAEYLHDRKIINQWY 398

Query: 336 SRRISSVVDSDD 347
           S  +  +V ++D
Sbjct: 399 SDWLDGLVKAND 410


>gi|325860240|ref|ZP_08173365.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
 gi|325482327|gb|EGC85335.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
          Length = 143

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 48/136 (35%), Gaps = 13/136 (9%)

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTG-----TIITVELPDGFMKLLAM 247
            +   LY GLR  D      +++   N++   +  KT      + + + L DG + L+  
Sbjct: 12  IYPLRLYCGLRFCDVKDLTYKNIDYTNHLLKFEQNKTKGHSANSGVVIPLNDGLLSLIGE 71

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAH 305
            P   ++   N               K    +AG+NK  S H  R    T +  AG    
Sbjct: 72  DPENLDSSIFNLP----TYESCCKSVKRWVKRAGINKHISWHMARHTFGTFALSAGIPIE 127

Query: 306 ELMATYGWKTVDQAET 321
            +    G  ++   + 
Sbjct: 128 SIAKMMGHASIASTQI 143


>gi|329314332|gb|AEB88745.1| Transposase B [Staphylococcus aureus subsp. aureus T0131]
          Length = 630

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 42/289 (14%), Positives = 83/289 (28%), Gaps = 33/289 (11%)

Query: 71  LKWLISEY----RKSAHWGSLAVNSRISFE--SYFDQIIRKSGDFD-YRKITTKHIRSGV 123
            K L+  Y         +  ++  ++   E  ++ D   ++        ++  +   S +
Sbjct: 218 FKQLVKRYCKLRLNVDSFSYVSDIAQRLKEFFNFLDMKFKQVQRVHQLTRVEIEAYLSEL 277

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV----ERPKRKTEGIRPWTKEDM 179
                 PS+    ++ +  LF   +R E+    P   +    + PK      R   +  +
Sbjct: 278 NMMGIKPSTITGRISILEGLFSTLLRLEW-DDVPSKILIYSEDYPKIPRAKPRFIDEFVL 336

Query: 180 QQFKSFWS-EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTII 233
           +Q  S               +   G+R S+ C      L  +            K     
Sbjct: 337 EQLNSHLDKLPEYIATMTMIVQECGMRISELCTLKKGCLLEDKDGDFFLKYYQWKMKKEH 396

Query: 234 TVELPDGFMKLLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKS 285
            V +      L+ +            E  F   D   +    F       A +  + +KS
Sbjct: 397 IVPISKEVALLIKVREDKVSEEFPDSEYLFPRKDGSPLKQETFRGELNKLAYEQNIVDKS 456

Query: 286 -------AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
                  AH  R    T   + G   H +    G ++ +    Y    D
Sbjct: 457 GEIYRFHAHAFRHTVGTRMINNGMPQHIVQKFLGHESPEMTSRYAHIFD 505


>gi|331651499|ref|ZP_08352519.1| prophage DLP12 integrase (Prophage QSR' integrase) [Escherichia
           coli M718]
 gi|331050772|gb|EGI22829.1| prophage DLP12 integrase (Prophage QSR' integrase) [Escherichia
           coli M718]
          Length = 236

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 37/219 (16%), Positives = 77/219 (35%), Gaps = 25/219 (11%)

Query: 148 VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCS 207
              +++   P   ++ P  + + +R   KE+ ++      E  +  + F     +GLR S
Sbjct: 11  RDWKWLEKAPV--IKIPAVRNKRVRWLEKEEAKRLIDECPEPLKSVVKFALA--TGLRKS 66

Query: 208 DSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK-- 261
           +      Q +         + +  K+   I V L D   K+L         +   + K  
Sbjct: 67  NIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAA 126

Query: 262 -----------QKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMA 309
                      +KM     + W      +AG+ +   H +R   A+    +G     L  
Sbjct: 127 KRADGTSTPAVRKMRIDSKTSWLS-ACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQE 185

Query: 310 TYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
             GW++++    Y   A       +++R+I  +   + P
Sbjct: 186 MGGWESIEMVRRYAHLAPNHL--TEHARKIDDIFGDNVP 222


>gi|299758063|dbj|BAJ10038.1| transposase B [Staphylococcus aureus]
          Length = 630

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 42/289 (14%), Positives = 83/289 (28%), Gaps = 33/289 (11%)

Query: 71  LKWLISEY----RKSAHWGSLAVNSRISFE--SYFDQIIRKSGDFD-YRKITTKHIRSGV 123
            K L+  Y         +  ++  ++   E  ++ D   ++        ++  +   S +
Sbjct: 218 FKQLVKRYCKLRLNVDSFSYVSDIAQRLKEFFNFLDMKFKQVQRVHQLTRVEIEAYLSEL 277

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV----ERPKRKTEGIRPWTKEDM 179
                 PS+    ++ +  LF   +R E+    P   +    + PK      R   +  +
Sbjct: 278 NMMGIKPSTITGRISILEGLFSTLLRLEW-DDVPSKILIYSEDYPKIPRAKPRFIDEFVL 336

Query: 180 QQFKSFWS-EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTII 233
           +Q  S               +   G+R S+ C      L  +            K     
Sbjct: 337 EQLNSHLDKLPEYIATMTMIVQECGMRISELCTLKKGCLLEDKDGDFFLKYYQWKMKKEH 396

Query: 234 TVELPDGFMKLLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKS 285
            V +      L+ +            E  F   D   +    F       A +  + +KS
Sbjct: 397 IVPISKEVALLIKVREDKVSEEFPDSEYLFPRKDGSPLKQETFRGELNKLAYEQNIVDKS 456

Query: 286 -------AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
                  AH  R    T   + G   H +    G ++ +    Y    D
Sbjct: 457 GEIYRFHAHAFRHTVGTRMINNGMPQHIVQKFLGHESPEMTSRYAHIFD 505


>gi|295443920|dbj|BAJ06390.1| transposase B from transposon Tn554 [Staphylococcus aureus]
          Length = 609

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 42/289 (14%), Positives = 83/289 (28%), Gaps = 33/289 (11%)

Query: 71  LKWLISEY----RKSAHWGSLAVNSRISFE--SYFDQIIRKSGDFD-YRKITTKHIRSGV 123
            K L+  Y         +  ++  ++   E  ++ D   ++        ++  +   S +
Sbjct: 197 FKQLVKRYCKLRLNVDSFSYVSDIAQRLKEFFNFLDMKFKQVQRVHQLTRVEIEAYLSEL 256

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV----ERPKRKTEGIRPWTKEDM 179
                 PS+    ++ +  LF   +R E+    P   +    + PK      R   +  +
Sbjct: 257 NMMGIKPSTITGRISILEGLFSTLLRLEW-DDVPSKILIYSEDYPKIPRAKPRFIDEFVL 315

Query: 180 QQFKSFWS-EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTII 233
           +Q  S               +   G+R S+ C      L  +            K     
Sbjct: 316 EQLNSHLDKLPEYIATMTMIVQECGMRISELCTLKKGCLLEDKDGDFFLKYYQWKMKKEH 375

Query: 234 TVELPDGFMKLLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKS 285
            V +      L+ +            E  F   D   +    F       A +  + +KS
Sbjct: 376 IVPISKEVALLIKVREDKVSEEFPDSEYLFPRKDGSPLKQETFRGELNKLAYEQNIVDKS 435

Query: 286 -------AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
                  AH  R    T   + G   H +    G ++ +    Y    D
Sbjct: 436 GEIYRFHAHAFRHTVGTRMINNGMPQHIVQKFLGHESPEMTSRYAHIFD 484


>gi|282859345|ref|ZP_06268455.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
 gi|282587877|gb|EFB93072.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
          Length = 355

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 48/275 (17%), Positives = 94/275 (34%), Gaps = 26/275 (9%)

Query: 97  SYFDQIIRKSG--DFDYRKITTK---HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQE 151
               + I+     D + R IT +     R  ++ +    S+   +L  +  L   AV Q 
Sbjct: 53  RMLCEFIKDLESKDIEIRSITEELFEKYRFFLKKKGLKGSTINNYLCWLSRLMFRAVSQR 112

Query: 152 YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WSEGSQPRLAFEFLLYSGLRCSD 208
            +  NP    E  K + + IR  +K D++   +     S+    R  F F  ++GL  +D
Sbjct: 113 IIRYNPFEHAEYEKVE-KAIRFLSKSDVKNLMAMKMCDSDAELARRMFIFSCFTGLAITD 171

Query: 209 SCRAGVQHLQ---NNIFSIK--TQKTGTIITVELPDGFMKLL-------AMTPIGKETFF 256
                  +++   +    I+   QKT     V L      ++       A+   G  T  
Sbjct: 172 MEHLTFGYIKSAADGQMYIRKERQKTKMEFIVPLHPIAKTIIEQQRQLKAVKEEGNNTDM 231

Query: 257 INN--DKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYG 312
            N    +   + +  +          G+    S H  R    T+   AG     +    G
Sbjct: 232 DNRLIFQPCCSRSVLAAKLSIVGKACGIKQRLSYHMARHTFGTMCLSAGIPIESIAKMMG 291

Query: 313 WKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
             ++   + Y +  D  ++     + I+   + + 
Sbjct: 292 HASIASTQIYAQVTD-CKISEDMDKLIAKHQEKNK 325


>gi|258447338|ref|ZP_05695484.1| transposition regulatory protein tnpB [Staphylococcus aureus A6300]
 gi|257853864|gb|EEV76821.1| transposition regulatory protein tnpB [Staphylococcus aureus A6300]
          Length = 630

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 42/289 (14%), Positives = 83/289 (28%), Gaps = 33/289 (11%)

Query: 71  LKWLISEY----RKSAHWGSLAVNSRISFE--SYFDQIIRKSGDFD-YRKITTKHIRSGV 123
            K L+  Y         +  ++  ++   E  ++ D   ++        ++  +   S +
Sbjct: 218 FKQLVKRYCKLRLNVDSFSYVSDIAQRLKEFFNFLDMKFKQVQRVHQLTRVEIEAYLSEL 277

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV----ERPKRKTEGIRPWTKEDM 179
                 PS+    ++ +  LF   +R E+    P   +    + PK      R   +  +
Sbjct: 278 NMMGIKPSTITGRISILEGLFSTLLRLEW-DDVPSKILIYSEDYPKIPRAKPRFIDEFVL 336

Query: 180 QQFKSFWS-EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTII 233
           +Q  S               +   G+R S+ C      L  +            K     
Sbjct: 337 EQLNSHLDKLPEYIATMTMIVQECGMRISELCTLKKGCLLEDKDGDFFLKYYQWKMKKEH 396

Query: 234 TVELPDGFMKLLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKS 285
            V +      L+ +            E  F   D   +    F       A +  + +KS
Sbjct: 397 IVPISKEVALLIKVREDKVSEEFPDSEYLFPRKDGSPLKQETFRGELNKLAYEQNIVDKS 456

Query: 286 -------AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
                  AH  R    T   + G   H +    G ++ +    Y    D
Sbjct: 457 GEIYRFHAHAFRHTVGTRMINNGMPQHIVQKFLGHESPEMTSRYAHIFD 505


>gi|187736162|ref|YP_001878274.1| integrase family protein [Akkermansia muciniphila ATCC BAA-835]
 gi|187426214|gb|ACD05493.1| integrase family protein [Akkermansia muciniphila ATCC BAA-835]
          Length = 363

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 45/261 (17%), Positives = 83/261 (31%), Gaps = 31/261 (11%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDF---DYRKITTKHIRSGVESRKHTPSSAIQFLTSMR 141
              +  +     S+  +++R   D      R +TT    + +E    +PS        + 
Sbjct: 100 ADRSALTLRDIRSFTQRMMRDVPDLAARPMRSMTTADCAAVLEKVFLSPSQRRHARAILS 159

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK--SFWSEGSQPRLAFEFL 199
            +F  A ++ + A NP   V+ P+     I P   E++++    +   E S        +
Sbjct: 160 GVFTVAWKKGWCAHNPVRLVDVPRVTEREIVPLRIEEVRRLLRTAEREEFSPCAAGVVMM 219

Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSI----KTQKTGTIITVELPDGFMKLLA---MTPIGK 252
           LY G+R  +  R     +      +    +  KTG    V L    +  L         +
Sbjct: 220 LYGGIRPYEVRRLTWGDVDWEEGEVRIRPRQSKTGGGRQVPLSRSVLAWLRSYYPQGAER 279

Query: 253 ETFFI------NNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHE 306
           E+ FI         +   +A  F  W +              +R   A+  A        
Sbjct: 280 ESVFICPPDWNRRWRALRSAAGFQTWRQDV------------LRHTFASYHAKMFHDWGR 327

Query: 307 LMATYGWKTVDQAE-TYTKGA 326
           L A  G +     +  Y    
Sbjct: 328 LQAAMGHRDGTLLQTRYVHTQ 348


>gi|70568189|dbj|BAE06286.1| transposase B for Tn554 [Staphylococcus aureus]
          Length = 630

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 42/289 (14%), Positives = 83/289 (28%), Gaps = 33/289 (11%)

Query: 71  LKWLISEY----RKSAHWGSLAVNSRISFE--SYFDQIIRKSGDFD-YRKITTKHIRSGV 123
            K L+  Y         +  ++  ++   E  ++ D   ++        ++  +   S +
Sbjct: 218 FKQLVKRYCKLRLNVDSFSYVSDIAQRLKEFFNFLDMKFKQVQRVHQLTRVEIEAYLSEL 277

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV----ERPKRKTEGIRPWTKEDM 179
                 PS+    ++ +  LF   +R E+    P   +    + PK      R   +  +
Sbjct: 278 NMMGIKPSTITGRISILEGLFSTLLRLEW-DDVPSKILIYSEDYPKIPRAKPRFIDEFVL 336

Query: 180 QQFKSFWS-EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTII 233
           +Q  S               +   G+R S+ C      L  +            K     
Sbjct: 337 EQLNSHLDKLPEYIATMTMIVQECGMRISELCTLKKGCLLEDKDGDFFLKYYQWKMKKEH 396

Query: 234 TVELPDGFMKLLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKS 285
            V +      L+ +            E  F   D   +    F       A +  + +KS
Sbjct: 397 IVPISKEVALLIKVREDKVSEEFPDSEYLFPRKDGSPLKQETFRGELNKLAYEQNIVDKS 456

Query: 286 -------AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
                  AH  R    T   + G   H +    G ++ +    Y    D
Sbjct: 457 GEIYRFHAHAFRHTVGTRMINNGMPQHIVQKFLGHESPEMTSRYAHIFD 505


>gi|15923045|ref|NP_370579.1| transposase B [Staphylococcus aureus subsp. aureus Mu50]
 gi|15924648|ref|NP_372182.1| transposase B [Staphylococcus aureus subsp. aureus Mu50]
 gi|15925758|ref|NP_373291.1| transposase B for Tn554 [Staphylococcus aureus subsp. aureus N315]
 gi|15926489|ref|NP_374022.1| transposase B for Tn554 [Staphylococcus aureus subsp. aureus N315]
 gi|15927237|ref|NP_374770.1| transposase B for Tn554 [Staphylococcus aureus subsp. aureus N315]
 gi|15927726|ref|NP_375259.1| transposition regulatory protein tnpB [Staphylococcus aureus subsp.
           aureus N315]
 gi|15928180|ref|NP_375713.1| transposition regulatory protein tnpB [Staphylococcus aureus subsp.
           aureus N315]
 gi|49482301|ref|YP_039525.1| transposase B 1 [Staphylococcus aureus subsp. aureus MRSA252]
 gi|49483902|ref|YP_041126.1| transposase B 2 [Staphylococcus aureus subsp. aureus MRSA252]
 gi|57865839|ref|YP_190049.1| transposase B [Staphylococcus epidermidis RP62A]
 gi|57867120|ref|YP_188797.1| Tn554, transposase B [Staphylococcus epidermidis RP62A]
 gi|57867259|ref|YP_188918.1| Tn554, transposase B [Staphylococcus epidermidis RP62A]
 gi|148266487|ref|YP_001245430.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           JH9]
 gi|148268139|ref|YP_001247082.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           JH9]
 gi|150392520|ref|YP_001315195.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           JH1]
 gi|150394206|ref|YP_001316881.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           JH1]
 gi|156978385|ref|YP_001440644.1| transposase B [Staphylococcus aureus subsp. aureus Mu3]
 gi|156979976|ref|YP_001442235.1| transposase B [Staphylococcus aureus subsp. aureus Mu3]
 gi|254663983|ref|ZP_05143455.1| transposase B [Staphylococcus aureus subsp. aureus Mu50-omega]
 gi|255006444|ref|ZP_05145045.2| transposase B [Staphylococcus aureus subsp. aureus Mu50-omega]
 gi|257428441|ref|ZP_05604839.1| transposition regulatory protein tnpB [Staphylococcus aureus subsp.
           aureus 65-1322]
 gi|257431610|ref|ZP_05607978.1| transposition regulatory protein tnpB [Staphylococcus aureus subsp.
           aureus 68-397]
 gi|257793728|ref|ZP_05642707.1| transposase [Staphylococcus aureus A9781]
 gi|258411263|ref|ZP_05681540.1| transposase [Staphylococcus aureus A9763]
 gi|258422475|ref|ZP_05685386.1| transposase B 2 [Staphylococcus aureus A9719]
 gi|258448321|ref|ZP_05696446.1| transposase B transposon Tn554 [Staphylococcus aureus A6224]
 gi|258451923|ref|ZP_05699940.1| transposition regulatory protein tnpB [Staphylococcus aureus A5948]
 gi|258454552|ref|ZP_05702518.1| transposase B transposon Tn554 [Staphylococcus aureus A5937]
 gi|282929819|ref|ZP_06336962.1| transposase B from transposon Tn554 [Staphylococcus aureus A10102]
 gi|293503534|ref|ZP_06667381.1| transposase B from transposon Tn554 [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|295407731|ref|ZP_06817516.1| transposase B transposon Tn554 [Staphylococcus aureus A8819]
 gi|295429347|ref|ZP_06821968.1| transposase B transposon Tn554 [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|297246796|ref|ZP_06930605.1| transposase B transposon Tn554 [Staphylococcus aureus A8796]
 gi|60415973|sp|P0A053|TNPB_STAAM RecName: Full=Transposase B from transposon Tn554
 gi|60415974|sp|P0A054|TNPB_STAAN RecName: Full=Transposase B from transposon Tn554
 gi|60415975|sp|P0A055|TNPB_STAAU RecName: Full=Transposase B from transposon Tn554
 gi|43728|emb|CAA26961.1| pot. tnpB protein [Staphylococcus aureus]
 gi|5360832|dbj|BAA82202.1| transposaseB [Staphylococcus aureus]
 gi|13699970|dbj|BAB41269.1| transposase B for Tn554 [Staphylococcus aureus subsp. aureus N315]
 gi|13700703|dbj|BAB42000.1| transposase B for Tn554 [Staphylococcus aureus subsp. aureus N315]
 gi|13701455|dbj|BAB42749.1| transposase B for Tn554 [Staphylococcus aureus subsp. aureus N315]
 gi|13701946|dbj|BAB43238.1| transposition regulatory protein tnpB [Staphylococcus aureus subsp.
           aureus N315]
 gi|13702551|dbj|BAB43692.1| transposition regulatory protein tnpB [Staphylococcus aureus subsp.
           aureus N315]
 gi|14021042|dbj|BAB47666.1| transposase B(Tn554) [Staphylococcus aureus]
 gi|14245822|dbj|BAB56217.1| transposase B [Staphylococcus aureus subsp. aureus Mu50]
 gi|14247430|dbj|BAB57820.1| transposase B [Staphylococcus aureus subsp. aureus Mu50]
 gi|27529891|dbj|BAC53828.1| transposase B(Tn554) [Staphylococcus aureus]
 gi|49240430|emb|CAG39081.1| transposase B 1 [Staphylococcus aureus subsp. aureus MRSA252]
 gi|49242031|emb|CAG40730.1| transposase B 2 [Staphylococcus aureus subsp. aureus MRSA252]
 gi|57636497|gb|AAW53285.1| transposase B [Staphylococcus epidermidis RP62A]
 gi|57637778|gb|AAW54566.1| Tn554, transposase B [Staphylococcus epidermidis RP62A]
 gi|57637917|gb|AAW54705.1| Tn554, transposase B [Staphylococcus epidermidis RP62A]
 gi|62815913|emb|CAH17566.1| Tranpsosase B [Staphylococcus aureus]
 gi|147739556|gb|ABQ47854.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           JH9]
 gi|147741208|gb|ABQ49506.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           JH9]
 gi|149944972|gb|ABR50908.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           JH1]
 gi|149946658|gb|ABR52594.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           JH1]
 gi|156720520|dbj|BAF76937.1| transposase B [Staphylococcus aureus subsp. aureus Mu3]
 gi|156722111|dbj|BAF78528.1| transposase B [Staphylococcus aureus subsp. aureus Mu3]
 gi|221327664|gb|ACM17508.1| transposase B [Staphylococcus aureus]
 gi|238773852|dbj|BAH66415.1| transposaseB [Staphylococcus aureus]
 gi|257275282|gb|EEV06769.1| transposition regulatory protein tnpB [Staphylococcus aureus subsp.
           aureus 65-1322]
 gi|257277664|gb|EEV08348.1| transposition regulatory protein tnpB [Staphylococcus aureus subsp.
           aureus 68-397]
 gi|257787700|gb|EEV26040.1| transposase [Staphylococcus aureus A9781]
 gi|257839992|gb|EEV64459.1| transposase [Staphylococcus aureus A9763]
 gi|257841541|gb|EEV65979.1| transposase B 2 [Staphylococcus aureus A9719]
 gi|257858416|gb|EEV81294.1| transposase B transposon Tn554 [Staphylococcus aureus A6224]
 gi|257860406|gb|EEV83237.1| transposition regulatory protein tnpB [Staphylococcus aureus A5948]
 gi|257863279|gb|EEV86041.1| transposase B transposon Tn554 [Staphylococcus aureus A5937]
 gi|282167044|gb|ADA81060.1| Transposase B from transposon Tn554 [Staphylococcus aureus]
 gi|282589026|gb|EFB94131.1| transposase B from transposon Tn554 [Staphylococcus aureus A10102]
 gi|285815780|gb|ADC36267.1| Transposase B from transposon Tn554 [Staphylococcus aureus
           04-02981]
 gi|285817341|gb|ADC37828.1| Transposase B from transposon Tn554 [Staphylococcus aureus
           04-02981]
 gi|291095200|gb|EFE25465.1| transposase B from transposon Tn554 [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|294967407|gb|EFG43451.1| transposase B transposon Tn554 [Staphylococcus aureus A8819]
 gi|295126725|gb|EFG56370.1| transposase B transposon Tn554 [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|297176347|gb|EFH35622.1| transposase B transposon Tn554 [Staphylococcus aureus A8796]
 gi|302750707|gb|ADL64884.1| transposition regulatory protein TnpB [Staphylococcus aureus subsp.
           aureus str. JKD6008]
 gi|302751485|gb|ADL65662.1| transposition regulatory protein TnpB_2 [Staphylococcus aureus
           subsp. aureus str. JKD6008]
 gi|312828684|emb|CBX33526.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           ECT-R 2]
 gi|315128351|gb|EFT84363.1| transposase B [Staphylococcus aureus subsp. aureus CGS03]
 gi|315195562|gb|EFU25949.1| transposase B [Staphylococcus aureus subsp. aureus CGS00]
 gi|329727157|gb|EGG63613.1| site-specific recombinase, phage integrase family [Staphylococcus
           aureus subsp. aureus 21172]
 gi|224808|prf||1202257D gene tnpB
          Length = 630

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 42/289 (14%), Positives = 83/289 (28%), Gaps = 33/289 (11%)

Query: 71  LKWLISEY----RKSAHWGSLAVNSRISFE--SYFDQIIRKSGDFD-YRKITTKHIRSGV 123
            K L+  Y         +  ++  ++   E  ++ D   ++        ++  +   S +
Sbjct: 218 FKQLVKRYCKLRLNVDSFSYVSDIAQRLKEFFNFLDMKFKQVQRVHQLTRVEIEAYLSEL 277

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV----ERPKRKTEGIRPWTKEDM 179
                 PS+    ++ +  LF   +R E+    P   +    + PK      R   +  +
Sbjct: 278 NMMGIKPSTITGRISILEGLFSTLLRLEW-DDVPSKILIYSEDYPKIPRAKPRFIDEFVL 336

Query: 180 QQFKSFWS-EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTII 233
           +Q  S               +   G+R S+ C      L  +            K     
Sbjct: 337 EQLNSHLDKLPEYIATMTMIVQECGMRISELCTLKKGCLLEDKDGDFFLKYYQWKMKKEH 396

Query: 234 TVELPDGFMKLLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKS 285
            V +      L+ +            E  F   D   +    F       A +  + +KS
Sbjct: 397 IVPISKEVALLIKVREDKVSEEFPDSEYLFPRKDGSPLKQETFRGELNKLAYEQNIVDKS 456

Query: 286 -------AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
                  AH  R    T   + G   H +    G ++ +    Y    D
Sbjct: 457 GEIYRFHAHAFRHTVGTRMINNGMPQHIVQKFLGHESPEMTSRYAHIFD 505


>gi|323978470|gb|EGB73553.1| phage integrase [Escherichia coli TW10509]
          Length = 396

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 40/257 (15%), Positives = 84/257 (32%), Gaps = 16/257 (6%)

Query: 85  GSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKHTPS--SAIQFLTSMR 141
            S+  +         D+ +    G    ++I  + I   +E  K   +  +  + +  + 
Sbjct: 120 RSVTEDYAKDIWRSLDKDVFPAIGAIPVQEIKARTIVEALEPIKARGALETVRRLVQRIN 179

Query: 142 VLFKWAVRQEYVAINPCLSVERP--KRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLAF 196
            +  +AV    +  NP   V     K K + +     E++ +        +     R   
Sbjct: 180 EIMIYAVNTGLIDANPASGVGMAFEKPKKQNMPTLRPEELPKLMRSLVMSNLSVSTRCLI 239

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIITVELPDGFMKLLAMTP--- 249
           E+ L + +R S++  A    +  +           K      V L    +++L       
Sbjct: 240 EWQLLTLVRPSEASGARWVEIDLDAKLWTIPAERMKAKREHIVPLSPQALEILDAMKPIS 299

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMA 309
             +E  F + +  K      +     K    G    AHG+R  ++T   +AG  A  + A
Sbjct: 300 AHREHIFPSRNDPKHAMNSQTANAALKRIGYGGKLVAHGLRSIASTAMNEAGFNADVIEA 359

Query: 310 TYGWKTVDQAET-YTKG 325
                  ++    Y + 
Sbjct: 360 ALAHSDKNEVRKAYNRS 376


>gi|160875073|ref|YP_001554389.1| integrase family protein [Shewanella baltica OS195]
 gi|160860595|gb|ABX49129.1| integrase family protein [Shewanella baltica OS195]
          Length = 431

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 40/305 (13%), Positives = 95/305 (31%), Gaps = 46/305 (15%)

Query: 88  AVNSRISFESYFDQIIRKSG-DFDYRKITTKH---IRSGVESRKHTPSSAIQFLTSMRVL 143
           A ++  ++ S    +I   G D    +I+  H    ++ +     +P +     T +R +
Sbjct: 108 AKSTSKNYRSKSKHVINYFGGDQLISEISRSHLLMFQANMLKAGLSPKTVNDVFTIVRGV 167

Query: 144 FKWAVRQEYVAINPCLSVERPKRKT--EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201
           +  A     +  NP   +   +R T  E   P+T++++++  +  +          F  +
Sbjct: 168 WYVAFEDGIIRSNPLDRISNIERDTLEETADPFTRDELERIAADDTSRRGDINMIMFCCW 227

Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKTQK------------TGTIITVELPDGFMKLL---- 245
           +GL  S+      + +    +++  ++             G +  +EL D   + L    
Sbjct: 228 TGLSLSEVIALAWEDIDTVNWTVNIRRARVLTQYKVPKERGRVRVIELIDPAKEWLIEQM 287

Query: 246 ---AMTPI-----------------GKETFFINNDKQKMNATQFSIWFKAKATKAGV-NK 284
               M P                   +  F                WF     +  + ++
Sbjct: 288 QHTMMLPTIELEVKQRDNITTKNENIRFVFLNGKSGLPWYDHSVRRWFTGILERTKLRHR 347

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGA--DRIRLGIKNSRRISS 341
             +  R   A+           +    G        + Y K    D  ++  + S  +  
Sbjct: 348 GPNQCRHTFASQLLSNYVPLEWVARQLGHSDTTMIKKHYGKWIPKDSQKMANRVSEMLGF 407

Query: 342 VVDSD 346
             D++
Sbjct: 408 TKDTE 412


>gi|269977663|ref|ZP_06184630.1| integrase [Mobiluncus mulieris 28-1]
 gi|269934266|gb|EEZ90833.1| integrase [Mobiluncus mulieris 28-1]
          Length = 368

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 51/352 (14%), Positives = 98/352 (27%), Gaps = 48/352 (13%)

Query: 10  FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALT---GSTPKREYINSPRK 66
            +T+ R + G+++Y  R   G +        +     Y   L    G T  R  ++S   
Sbjct: 3   GITEIRHKDGRVVYRVRFRDG-KTNASETFRNIETATYFRDLVKQFGGTAARNILDSREN 61

Query: 67  KPTT----LKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGD-FDYRKITTKHIR 120
              T    L  +   Y + A   +    +   + +     I  K       R +T + I 
Sbjct: 62  PDDTDTLTLGGIHQSYLEHAASYA-TPGTIARYRNMAASYIFPKIPPQTPIRALTRESIE 120

Query: 121 SGVESRKHTP---------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK-TEG 170
           + V   +  P          +  + +  +  LF + +    +  NP   +  P       
Sbjct: 121 NYVTWLRAKPSRYGTSLKPRTIKRIVAFLSTLFNYQIEIGNLESNPARGIRIPNDAIPTQ 180

Query: 171 IRPWTKEDMQQFKSFWS-EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229
               T + +++        G   R    FL  +GLR  ++       +     +I   K 
Sbjct: 181 PVFLTPQQVEKIADNCGYYGVLVR----FLYATGLRFGEATALTPADVNVKTRTITVSKA 236

Query: 230 GTI------------------ITVELPDGFMKLLAMTPIGKETFFI---NNDKQKMNATQ 268
                                 TV +    + LL    +    F         + +    
Sbjct: 237 WKQGEKSSDFYLGAPKTDTSTRTVLVSKSVIALLKPLLVEDAPFLFHPKTRPDRPLRNKT 296

Query: 269 FSI-WFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
           F    +K            H +R    +    AG     +    G K +   
Sbjct: 297 FRNCAWKQAVENMDPRPRIHDLRHSHVSRLIQAGIPLPVIQKRVGHKDIQTT 348


>gi|237718113|ref|ZP_04548594.1| site-specific recombinase [Bacteroides sp. 2_2_4]
 gi|229452534|gb|EEO58325.1| site-specific recombinase [Bacteroides sp. 2_2_4]
          Length = 422

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 38/215 (17%), Positives = 73/215 (33%), Gaps = 20/215 (9%)

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVER----PKRKTEGIRPWTKEDMQQFKS---FWSEGS 190
             +  +F  AV+   +  NP   +E+    PK KT   +  T +++++F +        +
Sbjct: 177 QRIVAVFNKAVKFGKLKANPFYQLEKSDCFPKPKTSHKQYLTPDELKRFMASDERSPGVA 236

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQN----NIFSIKTQKTGTIITVELPDGFMKLLA 246
           + + AF F   +GLR SD        ++     N   I  +KT  +  V + +  +  + 
Sbjct: 237 ETQKAFGFACLTGLRISDIKALRWSDIKRNKETNTLVIVQKKTKALNAVPIGNTALSWMP 296

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATA 304
                   F +                K  A K G+ K  S H  R     +        
Sbjct: 297 PKGDDDFVFHL------PAKANVDAALKRIAKKVGIEKNISFHCSRHTFGILVQAVTGNI 350

Query: 305 HELMATYGWKTVDQAETYTKGA-DRIRLGIKNSRR 338
                  G K++     Y     +     + N+++
Sbjct: 351 ETTKKLMGHKSLKSTAIYADVLTNEKVKAVDNTKK 385


>gi|307269909|ref|ZP_07551235.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX4248]
 gi|306513699|gb|EFM82305.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX4248]
          Length = 372

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 50/354 (14%), Positives = 110/354 (31%), Gaps = 50/354 (14%)

Query: 14  ERTRHGKIIYYFRKGH----GRRIRLPYPHESTFIPAYMSALTGSTPKREYIN--SPRKK 67
            + +     Y+         G+RI         F   + +A        +++     +++
Sbjct: 8   YKDKKTGKYYFVASLGFDLKGKRI-------QKFKRGFKTAKEAKKAYNQFMIDYQEKRE 60

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127
             T      EY K  +   +   +  +     +  +    +     I T  ++  +    
Sbjct: 61  KITFGNFYEEYYKCWYKNHVKEGTFKTNTGIIENHLSIFNEVQINAIETVDLQKLINYLS 120

Query: 128 H----------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
                      +P      + +++ +F+ A    ++  +    V R + + + +  WT +
Sbjct: 121 GEYKTKTGESLSPEYINLIICNIQSVFERAFIFGFIDEDISKKVSRVRVEDKEVNIWTID 180

Query: 178 DMQQFKSFWSEGSQ----PRLAFEFLLYSGLRCSDSCRAGVQHLQNN------------- 220
           DMQ+      E        ++ F FL  +GLR  ++     + +  +             
Sbjct: 181 DMQKVMLLSDESDSLLFFKKMFFRFLFMTGLRLGEALALNWEDVDFDSKVVYINKTMLVK 240

Query: 221 ---IFSIKTQKTGTII-TVELPDGFMKLLAMTPIGKET----FFINNDKQKMNATQFSIW 272
               F   T KT + I TV L D  ++L  +    +         + D   +  +    W
Sbjct: 241 NKREFRTTTPKTKSSIRTVSLDDETLRLFEIWREQQSPLKINLIFSIDGGTLAKSTTHGW 300

Query: 273 FKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
            K     A V     H +R   A++       +  +    G   +    E Y  
Sbjct: 301 LKKICDLADVPVIKIHALRHSHASMLIALKEDSLVIKERLGHSRITTTLEKYGH 354


>gi|322436114|ref|YP_004218326.1| integrase family protein [Acidobacterium sp. MP5ACTX9]
 gi|321163841|gb|ADW69546.1| integrase family protein [Acidobacterium sp. MP5ACTX9]
          Length = 381

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 50/335 (14%), Positives = 89/335 (26%), Gaps = 48/335 (14%)

Query: 22  IYYFRKGHGRRIRLPYPHESTFIPAY-MSALTGSTPKREYINSPRKKPT------TLKWL 74
            YY     G R R      +T    Y   A      +   +    +KP       T   L
Sbjct: 27  RYYEDAATGGRTRKALFVGTT--DKYKTEAQARKAVEAILLKLNAEKPMHHLGTVTFGGL 84

Query: 75  ISEYRKSAHWGSLAVN--SRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
              Y        L     +R S+ S  +  I  + G++    +    +    +    +P 
Sbjct: 85  CDRYIAE----ELPERYSTRKSYLSNINLHIKPRWGEYLIEAVRPMAVEGWFKEMDKSPK 140

Query: 132 SAIQFLTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRP--WTKEDMQQFKSFWS 187
           +     + M V+F+ A R E      NP   V          RP   T +      +   
Sbjct: 141 TKAHIRSVMHVIFECAARWELFNERRNPIEMVRVKDSTKRRKRPMILTNDTFDAVLAGLP 200

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-----------FSIKTQKTG-TIITV 235
           E    R         GLR S+        L                 +   KT  +   V
Sbjct: 201 EPF--RTMVVVAQCLGLRVSEITGLQWGDLDTERRQLLVQRSIVNGRVDDVKTEYSHDHV 258

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDK----QKMNATQF--SIWFKAKATKAGVNKS---- 285
            + +  +++L              +       +++  +  +   K     AG+       
Sbjct: 259 PIHESLLEVLLAWSEQCP---ETEEGWMFPNPLSSKPYYSTEIQKRYLKPAGIKLGLGPI 315

Query: 286 -AHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
             H  R    +   + GA            ++   
Sbjct: 316 GWHTFRHTYRSWLDETGAPMKVQQELMRHASIQTT 350


>gi|296185025|ref|ZP_06853435.1| site-specific recombinase, phage integrase family [Clostridium
           carboxidivorans P7]
 gi|296049859|gb|EFG89283.1| site-specific recombinase, phage integrase family [Clostridium
           carboxidivorans P7]
          Length = 199

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 25/156 (16%), Positives = 50/156 (32%), Gaps = 14/156 (8%)

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTGT----I 232
           ++ F+   S   +    F      GLR S+     ++           K  K  +     
Sbjct: 24  IESFQGIHSI--RDLAIFRVAYRCGLRASEIALIKLEDYNASKGELYCKRLKGSSNNTIR 81

Query: 233 ITVELPDGFMKLLA--MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV----NKSA 286
           + ++      K +A           F++   + ++        K   + A +        
Sbjct: 82  LDIKTKSVLDKYIAKYRILSESSPLFVSQQNKPISRQTLDYLIKKYCSLANISDKTKYHF 141

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           H ++  +A   A++G    EL    G K+V   E Y
Sbjct: 142 HSLKHTTAVHLAESGMDIKELQWWLGHKSVSNTEIY 177


>gi|256847460|ref|ZP_05552906.1| integrase [Lactobacillus coleohominis 101-4-CHN]
 gi|256716124|gb|EEU31099.1| integrase [Lactobacillus coleohominis 101-4-CHN]
          Length = 373

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 45/318 (14%), Positives = 109/318 (34%), Gaps = 40/318 (12%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL-AVNSRISFESYFDQIIRKSG-D 108
           L     KR   N   +K  TL  +I E+     + +     +   ++    +I    G D
Sbjct: 47  LEAKIQKRLQENGKVQKGVTLGQVIEEW--EPIYRNQVRPTTFSHYDQVKKKIEHYVGFD 104

Query: 109 FDYRKITTKHIRSGVESRKHTPSSAIQFLTSM----RVLFKWAVRQEYVAINPCLSV--- 161
               K+  +++    E   +  + +   + ++      + ++A +++YV  +P   +   
Sbjct: 105 TLVNKMDDRYLIQLCERLLYKENMSNVIVRNIYWKLSAILRFAYKRDYVTQSPRNHLDIN 164

Query: 162 -ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR-LAFEFLLYSGLRCSDSCRAGVQHLQN 219
            ++   +    +     + +    +  + +      FE+   +G+R  ++    V+++  
Sbjct: 165 WKKETHQKIAKKFLEDSEAKAVLDYVYQHNHQHGAIFEWQYLTGMRIGEALGMQVKNIYE 224

Query: 220 NIFSIKTQKTGTIIT----------------------VELPDGFMKLLAMTPIGKET--F 255
           +  +   Q TGT+I                       V LP+  ++L      GK+   F
Sbjct: 225 DKGNYYAQVTGTLIYTDLKTSDYYKQDATKTASGLRSVLLPNRAVQLYKEWSFGKQPDDF 284

Query: 256 FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGW 313
               D +  + T  +          G++K  + H  R    +  A+ G   + +    G 
Sbjct: 285 LFVYDNRFFSFTTLNRQLFNAKKFLGIDKELTTHTFRHTHVSKLAELGVPLYIIEDRIGH 344

Query: 314 KTVDQAE-TYTKGADRIR 330
                    Y    ++ +
Sbjct: 345 ANSATIRNVYLHVTNKAK 362


>gi|256848084|ref|ZP_05553528.1| integrase [Lactobacillus coleohominis 101-4-CHN]
 gi|256715144|gb|EEU30121.1| integrase [Lactobacillus coleohominis 101-4-CHN]
          Length = 361

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 33/276 (11%), Positives = 82/276 (29%), Gaps = 26/276 (9%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK-- 127
           TL      + K     ++   ++  ++     I           I     +  +      
Sbjct: 60  TLFAYYERWFKLYKQPNITDVTKNRYKVIGKAIQDYFDVTKLVNIRRSDYQGFINWYGAD 119

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI--RPWTKEDMQQFKSF 185
           H   S  +   ++R    +A+  + +  +   +V+    ++  +     T  ++ + K  
Sbjct: 120 HARDSVTKLNGALRSCVSYAIDDDIITKDFTHNVQIVYDRSRKVNVEYLTNAELVRLKDA 179

Query: 186 WSEGSQP----RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII-------- 233
             +   P    R      +Y+G+R ++      + +     +I   K+   I        
Sbjct: 180 VVQHLNPLSTSRYMILTAIYTGMRKAEVQALTWKDIDFLHSTITINKSWDEIKKAFKPTK 239

Query: 234 ------TVELPDGFMKLLAMTPIGKETF-FINNDKQKMNATQFSIWFKAKATKAGVNK-- 284
                 T+++    +K LA       T  F+N       +T  +          G+ K  
Sbjct: 240 TSTSNRTIKVNRELLKRLADLKANGSTLVFMNGLGTVPTSTALNKCLHRIMNHVGIKKQN 299

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
            + + +R          G   + +    G   +   
Sbjct: 300 FTFYSLRHVHVAYLIGQGVDVYAISKRLGHSNITTT 335


>gi|227545533|ref|ZP_03975582.1| integrase [Lactobacillus reuteri CF48-3A]
 gi|300908400|ref|ZP_07125863.1| integrase [Lactobacillus reuteri SD2112]
 gi|227184494|gb|EEI64565.1| integrase [Lactobacillus reuteri CF48-3A]
 gi|300893807|gb|EFK87165.1| integrase [Lactobacillus reuteri SD2112]
          Length = 415

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 43/287 (14%), Positives = 101/287 (35%), Gaps = 41/287 (14%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH---IRSGV--ESRKHTPSSAIQFLTS 139
           G++  ++ +S E   + I+++ GD   ++I        R+ +  + + ++ S A      
Sbjct: 96  GNVEESTWLSREPVLEMILKRFGDKKLKQIQPVDCLQFRNWLLSDEKGYSQSYASLVYGL 155

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP---WTKEDMQQFKSFWS----EGSQP 192
            R +   AV  +Y+  NP    +     ++G      WT E+ ++  S       EG+  
Sbjct: 156 FREVLDSAVELDYLTQNPSRIKKATGAISKGHHVIHYWTLEEFKKVISKCYMGDIEGALA 215

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSI-----------KTQKT-----GTIIT 234
            +      ++G+R S++       +   +    +           K +K        + T
Sbjct: 216 YVMLNLYYFTGMRVSEALALWWSDVNLADGYIKVSHTLTNTKDPDKKRKNYTKTAAGMRT 275

Query: 235 VELPDGFMKLLA---------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284
           +++P   + LL          +     + + ++   + ++ +  +      A  AGV++ 
Sbjct: 276 IDIPQDLVDLLKWWKKLQYENLPQHSDDHYVLSATDEPLHRSTVNNVVNRYADLAGVHRI 335

Query: 285 SAHGVRKFSATISADA-GATAHELMATYGWKTVDQAETYTKGADRIR 330
            A  +R   A +  +        +    G         Y     R R
Sbjct: 336 QAKELRTSHACLLINKYNVDILAVSQRLGHAKPTTTLKYYSQLWRGR 382


>gi|307822466|ref|ZP_07652697.1| integrase family protein [Methylobacter tundripaludum SV96]
 gi|307736070|gb|EFO06916.1| integrase family protein [Methylobacter tundripaludum SV96]
          Length = 291

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 35/265 (13%), Positives = 81/265 (30%), Gaps = 35/265 (13%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRK--ITTKHIRSGVESRKHTPSSAIQFLTSMRV 142
             L+  ++ S+     +                 +  +  +     +P S    LT ++ 
Sbjct: 22  RKLSPKTQASYIRVVKRFAGFLRRSPDTASVEDLRRYQLHLVDHGISPISLNATLTGLKF 81

Query: 143 LFKWAVRQEYVAINPCLSVERP--KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200
           LF+  + +      P L  +        +     ++E++ +  +      + + A     
Sbjct: 82  LFETTLDR------PELLTKMHPVHVPHKLPVVLSREEVARLIAAVD-NLKHQTALSVAY 134

Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLAMTPIGKETFFIN 258
            +GLR S+     V  + +   +++    K        L    ++ L          F +
Sbjct: 135 GAGLRASEVVSLKVGDIDSQRMTLRIEQGKGSKDRYAMLSPVLLERLRAWWK-----FAH 189

Query: 259 NDKQ---------------KMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301
              +                ++  Q +    A A  A ++K  S H +R   AT   +  
Sbjct: 190 AQGKMLQGGWLFPGLDPIDPLSTRQLNRAIHAAAEAARIDKRVSMHTLRHSFATHLLEQK 249

Query: 302 ATAHELMATYGWKTVDQAETYTKGA 326
                +    G K ++    Y + A
Sbjct: 250 VDIRVIQVLLGHKKLETTALYAQVA 274


>gi|227485414|ref|ZP_03915730.1| integrase [Anaerococcus lactolyticus ATCC 51172]
 gi|227236544|gb|EEI86559.1| integrase [Anaerococcus lactolyticus ATCC 51172]
          Length = 380

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 44/288 (15%), Positives = 97/288 (33%), Gaps = 39/288 (13%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVES--- 125
           + +     Y++      +  N+  + E+  + +I+   GD    +I    I         
Sbjct: 64  SFREFFELYKRDRK-PRIRENTWRTKEAIVNQKILPYIGDLMLNEINNVTIIQWQNELMK 122

Query: 126 ------RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKED 178
                 +K++P+        +  +   A R   +  N    V    +++ + +  WT+++
Sbjct: 123 IKDKNGKKYSPTYLRTIHAQLSSILNHACRYYNLKTNVARDVGSMGEKEADEMLFWTQDE 182

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG----------------VQHLQNNIF 222
            ++F     +  +   AFE L + GLR  +                     +Q +     
Sbjct: 183 YERFIEAIKDKPESFYAFELLYWCGLRMGELLALTKEKFDFERHTLKIDESLQRIDGKNV 242

Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
               +   +I T+ +P+     +       E+F+    K K     FS  +       G 
Sbjct: 243 ITAPKTKKSIRTIVMPEFLTDEIKEYI---ESFY--KLKPKDLIFNFSKSYLHHEMDRGS 297

Query: 283 NKS------AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            KS       H +R    ++  + G +A  +    G +++D    Y  
Sbjct: 298 KKSQVKRIRIHDLRHSHVSLLIELGFSATAIADRVGHESIDITYRYAH 345


>gi|323516946|gb|ADX91327.1| hypothetical protein ABTW07_0891 [Acinetobacter baumannii
           TCDC-AB0715]
          Length = 385

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 43/277 (15%), Positives = 91/277 (32%), Gaps = 28/277 (10%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPS 131
           ++ E+         +     + E     +     +    ++  KHI   ++    K T  
Sbjct: 87  VVEEWLSIMKSQWTSKKYYDTVEYRLAYLTEDFKNLPINEVERKHISKKIKEIVAKGTLE 146

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVE--RPKRKTEGIRPWTKEDMQQFKSFWSE- 188
           +A + L   + +F +A+  +Y   NPC  VE   P+ +++        +M +F       
Sbjct: 147 TASRALRLGKQVFDFAIASDYTDRNPCTLVEDVIPEYESDSHPCLPVSEMPEFFKRMKAS 206

Query: 189 --GSQPRLAFEFLLYSGLRCSDSCRAGVQ----HLQNNIFSIKTQ--KTGTIITVELPD- 239
              S  ++A   + Y+G R ++  +A         +N ++ I  +  K    + V L   
Sbjct: 207 HSSSIVKMAMLLVCYTGTRITELLKARWDTGEIDFENKVWIIPAERMKKRKELMVPLVPQ 266

Query: 240 --GFMKLLAMTPIGKETFFINNDKQK---MNATQFSIWFKAKATKAGVNKSAHGVRKFSA 294
                K L          F     +    M +       K       +    HG R   +
Sbjct: 267 IYALFKELESVKTDDGYIF-KKRGKPYEHMTSESVLTMIKRMGYTDKM--VTHGFRSLFS 323

Query: 295 TISADAGATAHELMAT-YGW-----KTVDQAETYTKG 325
           T + ++     E++           K    ++ Y + 
Sbjct: 324 THANESKLFRGEVIDYQIAHVNKTTKADKTSKIYNRA 360


>gi|189466917|ref|ZP_03015702.1| hypothetical protein BACINT_03299 [Bacteroides intestinalis DSM
           17393]
 gi|212694231|ref|ZP_03302359.1| hypothetical protein BACDOR_03757 [Bacteroides dorei DSM 17855]
 gi|224026268|ref|ZP_03644634.1| hypothetical protein BACCOPRO_03024 [Bacteroides coprophilus DSM
           18228]
 gi|253571401|ref|ZP_04848807.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|254882520|ref|ZP_05255230.1| transposase [Bacteroides sp. 4_3_47FAA]
 gi|317480624|ref|ZP_07939712.1| phage integrase [Bacteroides sp. 4_1_36]
 gi|329965204|ref|ZP_08302135.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
 gi|189435181|gb|EDV04166.1| hypothetical protein BACINT_03299 [Bacteroides intestinalis DSM
           17393]
 gi|212663218|gb|EEB23792.1| hypothetical protein BACDOR_03757 [Bacteroides dorei DSM 17855]
 gi|224019504|gb|EEF77502.1| hypothetical protein BACCOPRO_03024 [Bacteroides coprophilus DSM
           18228]
 gi|251838609|gb|EES66694.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|254835313|gb|EET15622.1| transposase [Bacteroides sp. 4_3_47FAA]
 gi|316903250|gb|EFV25116.1| phage integrase [Bacteroides sp. 4_1_36]
 gi|328523567|gb|EGF50664.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
          Length = 402

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 37/262 (14%), Positives = 84/262 (32%), Gaps = 26/262 (9%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRKI---TTKHIRSGVESRKHTPSSAIQFLTSMRV 142
           +    +  S + Y      K GD    ++   T +     ++      ++   ++ ++R 
Sbjct: 132 ARYKTTLNSLQRYL-----KGGDVPLEEVDGTTIQGYEQWLKDSGLCRNTTSFYIRNLRT 186

Query: 143 LFKWAVRQEY-VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLAFE 197
           ++  AV     ++ +P   V     KT   R    E ++Q K             R  F 
Sbjct: 187 IYNHAVDDGLVISSSPFKHVYTGIDKTVK-RALPLEIIKQLKELDLSLNPRLELARDMFL 245

Query: 198 FLLYS-GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFF 256
           F  Y+ G+   D  +    +L  +    + QKT   + ++      +++A        + 
Sbjct: 246 FSFYTRGMSFIDMAQLTPSNLHGSTLIYRRQKTSQQLHIKWEPAMQEIVAKYKTDDSPYL 305

Query: 257 I---------NNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAH 305
           +            + K   ++ +   K      G+    + +  R   A+I+        
Sbjct: 306 LPIAKGEGAIFWRQYKNAYSRITKQLKKIGEMIGLSVPLTTYVARHSWASIAKSKNVPVS 365

Query: 306 ELMATYGWKTVDQAETYTKGAD 327
            +    G  +    + Y    D
Sbjct: 366 TISEALGHDSEKTTQIYLSSLD 387


>gi|91782715|ref|YP_557921.1| putative phage integrase [Burkholderia xenovorans LB400]
 gi|91686669|gb|ABE29869.1| Putative phage integrase [Burkholderia xenovorans LB400]
          Length = 350

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 52/335 (15%), Positives = 100/335 (29%), Gaps = 37/335 (11%)

Query: 23  YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSA 82
           YY+R   G    L    +        S L  +        S      T+  L+  Y    
Sbjct: 23  YYYRVPPG----LEASWDGKTQFRLGSTLPEAYKTWADRLSTLDDAKTIGDLLDRYALEV 78

Query: 83  HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRV 142
                 V ++        ++    G      +  +HI   V+ R    +SA + +  +  
Sbjct: 79  -VPKKEVTTQAQNAVAIKRLRAVMGAHALGALKPRHIYQYVDKRAAK-TSAHREVEVLSH 136

Query: 143 LFKWAVRQEYVAINPCLS---VERPKRKTEGIRPWTKEDMQQFKSFWSEGS--QPRLAFE 197
            F  AV+  Y+  +P      ++  K +T  +  W   +    +S    GS    +    
Sbjct: 137 AFTMAVKWGYLDRHPFKGEVRLDGEKPRTRYVEDWEIVECLSIESKRKAGSVLAIQAYMR 196

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK----TGTIITVELPDGFMKLLAMTPIGKE 253
             L +G+R  D  R  +  L+ +   +   K    TG  +  E  +   + + M    + 
Sbjct: 197 LKLLTGMRRGDLLRLTMSDLKEDGIHVMPGKTEGSTGKRLIYEWSEQLREAVDMAKSVRP 256

Query: 254 T-----FFINNDKQKM---NATQFSIWFKAKATKAGV---------NKSAHGVRKFSATI 296
                  F N   +        +   W                   + + H +R   A+ 
Sbjct: 257 VKIAPWLFCNRRGECYFNETTGRAGGWDTMWRNFLTRVLEETKVREHFTEHDLRAKCASD 316

Query: 297 SADAGATAHELMATYGWKTVDQAE-TYTKGADRIR 330
           +     T     A          +  Y +  +R+R
Sbjct: 317 AE----TLEHAQALLAHADGKVTQRIYRRKPERVR 347


>gi|78778767|ref|YP_396879.1| putative site-specific integrase/recombinase [Prochlorococcus
           marinus str. MIT 9312]
 gi|78712266|gb|ABB49443.1| putative site-specific integrase/recombinase [Prochlorococcus
           marinus str. MIT 9312]
          Length = 204

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 37/204 (18%), Positives = 66/204 (32%), Gaps = 19/204 (9%)

Query: 134 IQFLTSMRVLFKWAVRQE--YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           ++ L  +RVL  WA  +    +  NP   +             T ED ++     S+ S 
Sbjct: 2   MRELRILRVLIDWARDERGAEIKDNPARQLRVRGTGDARAPFLTNEDEKRLLFELSQMSN 61

Query: 192 P-RLAFE-FLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIIT-------VELPDGF 241
           P  L      L +G R S+      +++          +K    I        V  P+  
Sbjct: 62  PNHLRLTKLALATGFRRSELLSLTWRNIDLKKKLLYICRKNCAAIDNSSGMRLVPFPEKA 121

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADA 300
            K+L  +          +     N       F     +AG+     H +R  + +    +
Sbjct: 122 QKILEESNERNGKVIELSKGVARNG------FDKARKRAGLQTLRFHDLRHIAISRMWSS 175

Query: 301 GATAHELMATYGWKTVDQAETYTK 324
           G  A E+ A  G + +     Y+ 
Sbjct: 176 GMNALEISACSGHRDIKMLMRYSH 199


>gi|71734374|ref|YP_277058.1| prophage PSPPH06, site-specific recombinase phage integrase family
           protein [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|71554927|gb|AAZ34138.1| prophage PSPPH06, site-specific recombinase, phage integrase family
           [Pseudomonas syringae pv. phaseolicola 1448A]
          Length = 382

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 42/306 (13%), Positives = 91/306 (29%), Gaps = 48/306 (15%)

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISF---ESYF----DQIIRKSGDFDYRKI 114
            +      TL+++ +++  S  +  L++ +   +            ++ +  GD   +K 
Sbjct: 68  QTSGVDKGTLRYVCTQFHLSDRYKKLSLKTHSDYCYSRDVLLGIPTRLGKPLGDLLVKKF 127

Query: 115 TTKHIRSGVESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP---KRKTE 169
           T   I+  V+      TPS A   L  +R + +W   + Y+  NP   +E P   KR+  
Sbjct: 128 TAALIQRIVDRLADEGTPSKAAHVLRYLRRVLQWGRNRGYLDSNPAQGIEAPVERKRRRL 187

Query: 170 GIRPWTKEDMQQFKSF------WSEGSQPRLAF--EFLLYSGLRCSDSCRAGVQHLQNNI 221
                 +  + +  +F         G    L++  E      LR  ++      H     
Sbjct: 188 PEHLVMETLVDRALAFGRLARNEKGGCPEYLSYVMEIGYLCRLRGIETITLTDAHELAEG 247

Query: 222 FSIKTQKTGTIITVELPDGFMKLLAMTPI-----------------GKETFFINNDKQKM 264
                +K      V                                 +    + +    +
Sbjct: 248 IMTNRRKGSRDNIVRWTPRLRAAWEGAKAYRAKVWASKSTVVPIRPDRRYIIVASHGGAL 307

Query: 265 NATQFSIWFKAKATKAGVNKSA--------HGVRKFSATISADAGATAHELMATYGWKTV 316
             +     ++   T A  + +         H +++   T +A   A   E     G +  
Sbjct: 308 RKSSLDTAWQRFITSAIEDGTIVAEQRFGLHDLKRRGITDTAGNRADKQE---ASGHRDG 364

Query: 317 DQAETY 322
              + Y
Sbjct: 365 AMMDVY 370


>gi|70724914|ref|YP_257121.1| hypothetical protein pSG3GP_12 [Sodalis glossinidius]
 gi|68697145|emb|CAI59403.1| hypothetical protein pSG3.12 [Sodalis glossinidius]
          Length = 335

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 51/319 (15%), Positives = 96/319 (30%), Gaps = 38/319 (11%)

Query: 35  LPYPHESTFI---PAYMSALTGST---PKREYINSPRKKPTTLKWLISEYRK----SAHW 84
           +     + F     AY                  + +K+  TLK L+  Y          
Sbjct: 1   MAGSRTAEFAHACDAYREFYLRERFAWENATEQETEKKQQLTLKSLLIFYFGKLCDDVEL 60

Query: 85  GSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRV 142
             ++ +        FD ++ +        +++    + S          +       +R 
Sbjct: 61  NRISRSYFKGQGYNFDSLMSQFNRNSPPIKQVAPPDLASI---------TTHNHRVFLRR 111

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG-SQPRLAFEFLLY 201
            +  A+       NPC    +    T  + P      +Q K+  S G  + RLA  F+  
Sbjct: 112 AYGLAIEVGMCIKNPCHITRKNLYYTSVVPPEKFATREQVKTLMSIGEPRQRLAVYFVAA 171

Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKTQ----------KTGTIITVELPDGFMKLLAMTPIG 251
            G+R S+       ++  +   I +           K G    + +     +LL   P  
Sbjct: 172 CGMRISEVAALRWNNIYTDTLVIDSHLTEAGILPGLKYGIRTLLTVTTELHQLLEQIPRQ 231

Query: 252 KETFFINNDKQKM-NATQFSI-WFKAKATKAGV---NKSAHGVRKFSATISADAGATAHE 306
            +  F         N   F     K    KAG+    KS H +R ++ ++    G    +
Sbjct: 232 GKYLFEKRGGGTYANVNAFRRGVLKDLLQKAGLTAEGKSFHALRHYAVSVWVSRGIQIEQ 291

Query: 307 LMATYGWKTVDQA-ETYTK 324
           + A  G  +       Y  
Sbjct: 292 ISAWLGHASPAITLAVYAH 310


>gi|317479205|ref|ZP_07938341.1| tyrosine type site-specific recombinase [Bacteroides sp. 4_1_36]
 gi|316904649|gb|EFV26467.1| tyrosine type site-specific recombinase [Bacteroides sp. 4_1_36]
          Length = 325

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 64/168 (38%), Gaps = 14/168 (8%)

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVE---RPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
            +L ++R     AV ++Y+ +NP   ++   +PKR        T +++ +        + 
Sbjct: 144 YYLKTLRYCLNRAVSEDYITVNPMNKIKNEDKPKRNRTERDYLTIKELTRLVHTPFYNTL 203

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQ-----NNIFSIKTQKTGTIITVELPDGFMKLLA 246
            R AF F  + GLR  D      + ++     N + SI  +KT   I++ L     + + 
Sbjct: 204 LRKAFLFSCFCGLRHCDIIALRWEDIRYDENGNALLSIIQKKTKEAISLPL---CSEAIK 260

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWF-KAKATKAGVNK--SAHGVRK 291
             P              + +   S         +AG++K  + H  R 
Sbjct: 261 HLPDRGNAPETEKVFAGLVSLGRSNVILHKWVEQAGISKHVTFHCFRH 308


>gi|315575528|gb|EFU87719.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0309B]
 gi|315580031|gb|EFU92222.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0309A]
          Length = 408

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 62/409 (15%), Positives = 127/409 (31%), Gaps = 86/409 (21%)

Query: 13  KERTRHGKIIY-YF----R-KGHGRRIRLPYPHESTFIPAYMSA--LTGSTPKREYINSP 64
             + ++G+  + YF    R  G GR+ ++      +   A  +A  + G     E++   
Sbjct: 6   SYKLKNGQDRWEYFVSNGRSNGTGRQQKIHKRGFRSHKEALKAAKIIEGQIASEEFVK-E 64

Query: 65  RKKPTTLKW----LISEYRKSAHWGSLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHI 119
             +  T+       I+EY+      ++   SRI +       I    G++   K      
Sbjct: 65  NPQKMTISKFMNIWINEYKN-----NVKEGSRIVYRDAIRMYIDPYIGNYQLNKYKPADH 119

Query: 120 RSGVESR-------KHTPSSAIQFLT----SMRVLFKWAVRQEYVAINPCLSVERP---- 164
           +  + S        K     +   +     ++   FK A +  Y+  NP   VE P    
Sbjct: 120 QKFINSLFTNKELGKSKNGLSYNTVKIVNAALSNAFKKAQKLGYIKSNPTYFVEFPLDKV 179

Query: 165 -----KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HL 217
                K K        +E++    +   +     + F  +   GLR  +           
Sbjct: 180 KEKTNKEKKLEFYTLEQENLFLDTARNFDDFMWYVFFLIIFDLGLRKGEVMALRWFNFDF 239

Query: 218 QNNIFSI-------------------------KTQKTGTIITVELPDGFM-------KLL 245
           ++NI +                          ++ K    +   + + +         +L
Sbjct: 240 RDNILTFDKQRLYRKEQPGQVILDDVKTDAGKRSLKMTNRVRNSVLELYSINYDLTSNVL 299

Query: 246 AMTPIGKETFFINNDKQ----KMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADA 300
            MT   ++  FIN+  +     +        +     KA + K   H  R  +A     A
Sbjct: 300 PMTNSNQDFLFINHRGKNVGLPIRQRSVDTAWHRIIQKANLPKIRIHDGRHTNAARLRQA 359

Query: 301 GATAHELMATYGWKTVDQAETYT--------KGADRIRLGIKNSRRISS 341
           G    ++    G K V   E Y         +  +++ L     ++  +
Sbjct: 360 GVPLEDIKDMLGHKNVKTTEIYAHVSPEVKERAVNKLELYQMQHKKSGN 408


>gi|297580067|ref|ZP_06941994.1| integrase [Vibrio cholerae RC385]
 gi|297535713|gb|EFH74547.1| integrase [Vibrio cholerae RC385]
          Length = 407

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 42/318 (13%), Positives = 87/318 (27%), Gaps = 50/318 (15%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD 110
                P+ ++ +   +    L+ L  ++  S     +  ++   ++      I   G   
Sbjct: 66  YAAHFPESKHASGVPQAKNLLQ-LTKQFLASKD-HDIRRSTLQRYDWVLRDFIEIYGKTR 123

Query: 111 YRKITTKHIRSGVES---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167
                +    +       +  T  +  + L ++     W  + EYV+ +    ++R K  
Sbjct: 124 SSDTLSPRTLTEFRQELVKGKTGRTINRNLVTINAFLAWLYKMEYVSRDLSKVLQRVKES 183

Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK 225
              I+P++  ++           Q R     L+YSG+R  + C    + +   N    I+
Sbjct: 184 EVDIQPFSMAEIDNILKHC-HQLQHRNIVTLLVYSGIRSGELCALAWEDVDFENKTIHIR 242

Query: 226 TQ----------KTGTIITVELPDGFMKLLAMT--------PIGKETFFINNDKQK---- 263
                       KT     V+L    +  L           P   +        +K    
Sbjct: 243 RSTYDMRGLKTTKTDKERFVDLLPPALDALKAQQYLTYSFEPKEYDVELPGQAYRKESLR 302

Query: 264 ------------------MNATQFSIWFKAKATKAGVNKS-AHGVRKFSATISAD-AGAT 303
                                      + A   K GV     + +R   A+     A   
Sbjct: 303 FVFNPKVVREQKVSGYDYYGKRALGRMWTALCKKGGVRYRNQYQLRHTYASWMITHANVN 362

Query: 304 AHELMATYGWKTVDQAET 321
              L    G   +     
Sbjct: 363 VSYLAQQMGHADITMVAR 380


>gi|260778906|ref|ZP_05887798.1| integron integrase IntI2 [Vibrio coralliilyticus ATCC BAA-450]
 gi|260605070|gb|EEX31365.1| integron integrase IntI2 [Vibrio coralliilyticus ATCC BAA-450]
          Length = 321

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 44/298 (14%), Positives = 91/298 (30%), Gaps = 59/298 (19%)

Query: 80  KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF--- 136
           +       ++ +  S+  +    I         ++ ++ +   +    ++ + AI     
Sbjct: 13  EHMRLSGYSIRTEKSYLYWIRSYIFYHEKRHPMQMGSEEVIQFLSYLANSRNVAINTQKV 72

Query: 137 -LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195
            L ++  L++  ++ E       L      ++ +     T  +++Q  S      + +L 
Sbjct: 73  ALNALVYLYQAFLKIELGE----LGFRHATKQRQLPVVITPNEVKQVLSH--LNGKEKLI 126

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE 253
            E L  SGLR S+  R  VQ +   N   +++  K        L    + +L +     E
Sbjct: 127 VELLYGSGLRISECLRLRVQDIDLSNLSITVRDGKGKKDRQTLLSKQCVDVLKLLIEQAE 186

Query: 254 TFFINNDKQKMNA-------TQFSIWFKAKA----------------------------- 277
              I ++K  +          ++   F+  A                             
Sbjct: 187 QVQIADNKHGIGPSLPYAIHKKYPNAFRKLAWMFIFPSPSISHSQYNSDHPSRHHLHSSV 246

Query: 278 ---------TKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
                     K  +NK  + H  R   AT    AG     +    G   V   + YT 
Sbjct: 247 IRKALSRAVAKTTINKKVTCHTFRHSFATHLLQAGRDIRSVQELLGHNDVKTTQIYTH 304


>gi|227113536|ref|ZP_03827192.1| prophage integrase [Pectobacterium carotovorum subsp. brasiliensis
           PBR1692]
          Length = 398

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 40/256 (15%), Positives = 90/256 (35%), Gaps = 21/256 (8%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS--SAIQFLTSMRVLFK 145
           A +++  + S    ++    +   ++I  + +   +E  K   +  +  + +  +  +  
Sbjct: 124 ADHAKDIWRSLEKDVLPAIENIPVQEIKARTLIQALEPIKARGALETVRRLVQRINEIMV 183

Query: 146 WAVRQEYVAINPCLSV----ERPKRKTEGIRPWTKEDMQQFKSFWSEGS--QPRLAFEFL 199
           +AV    +  NP   +    ERPK K        +E  +  ++          R   E+ 
Sbjct: 184 YAVNTGLIDANPASGIGMAFERPK-KQHMPTIRPEELPKLMRTIAMSNLSIPTRCLLEWQ 242

Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSI----KTQKTGTIITVELPD---GFMKLLAMTPIGK 252
           L + +R +++       +     +     +  K      V L D     + ++      +
Sbjct: 243 LLTLIRPAEASATAWAEIDIEERTWSIPAERMKAKRDHIVPLSDQALELLDIMRPISGNR 302

Query: 253 ETFFI--NNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMAT 310
           E  F   N+ K+ MN+   +   K      G    AHG+R  ++T   +AG     + A 
Sbjct: 303 EHVFPSRNDPKKPMNSQTANAALKRIGY--GGKLVAHGLRSIASTAMNEAGFNPDVIEAA 360

Query: 311 YGWKTVDQAET-YTKG 325
                 ++    Y + 
Sbjct: 361 LAHSDKNEVRKAYNRS 376


>gi|239629952|ref|ZP_04672983.1| integrase [Lactobacillus paracasei subsp. paracasei 8700:2]
 gi|239527564|gb|EEQ66565.1| integrase [Lactobacillus paracasei subsp. paracasei 8700:2]
          Length = 308

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 32/283 (11%), Positives = 84/283 (29%), Gaps = 43/283 (15%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
            K  I  Y++    G++   +   ++     ++  + D    ++  +  +  +       
Sbjct: 12  FKQWIELYKE----GAVRPVTYQKYQMSHKHLVTLAPDLHMDELKRRTYQELINEF---- 63

Query: 131 SSAIQFLTSMRVLFKW-------AVRQEYVAINPCLSVERPKRKTEGIRP--WTKEDMQQ 181
            +A     +              A+ +  +  +P   V      +   +     + ++ +
Sbjct: 64  -AANHEKQTTLDFHHHLKAAILDALDEGILEQDPTRKVVIKGTVSRVHKVKFLNQHELTK 122

Query: 182 FKSFWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSIKTQKT---------- 229
             +           +  LL   +GLR  ++             ++   KT          
Sbjct: 123 LLALLDLDHGLDWDYFLLLIAKTGLRFGEALGVTPMDFDMAKLTLTINKTWDYKSATGSF 182

Query: 230 ----------GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK 279
                        +  ++   F   +   P  K   F+ + ++  N T   I  +    +
Sbjct: 183 AETKNTASVRKVPLDWQVAMQFATQIKSLPQDKP-IFVTDGQRVYNETANDILERK-CKR 240

Query: 280 AGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
           A +   S HG+R   A++   AG +   +    G   +   + 
Sbjct: 241 ASIPVISIHGLRHTHASLLLYAGVSVGSVARRLGHANMSTTQK 283


>gi|15611684|ref|NP_223335.1| integrase-recombinase protein (XERCD family) [Helicobacter pylori
           J99]
 gi|4155169|gb|AAD06197.1| INTEGRASE-RECOMBINASE PROTEIN (XERCD FAMILY) [Helicobacter pylori
           J99]
          Length = 356

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 26/174 (14%), Positives = 63/174 (36%), Gaps = 15/174 (8%)

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIIT 234
           E + + +      ++ RL  + ++++G+R +++ +  ++    +N  ++I  +  G    
Sbjct: 179 ESIDKIEMSAKVRARNRLLIKIIVFTGMRSNEALQLKIKDFTLENGCYTILIKGKGDKYR 238

Query: 235 VELPDG------FMKLLAMT---PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284
             +           + L      P+  +  F N     +         +     AG+ + 
Sbjct: 239 AVMLKAFHIESLLKEWLTERELYPVKNDLLFCNQKGSALTQAYLYKQVERIINFAGLRRE 298

Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
              AH +R   AT+          +    G  +++ +  YT   D+ RL    S
Sbjct: 299 KNGAHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTH-FDKDRLKEAAS 351


>gi|60680742|ref|YP_210886.1| putative transposase [Bacteroides fragilis NCTC 9343]
 gi|60492176|emb|CAH06939.1| putative transposase [Bacteroides fragilis NCTC 9343]
          Length = 412

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 46/266 (17%), Positives = 89/266 (33%), Gaps = 35/266 (13%)

Query: 90  NSRISF---ESYFDQIIR---KSGDFDYRKITTKHIRSGVESRKHT----PSSAIQFLTS 139
            +   +     +  + I+      D   ++IT   I       + T     ++  +F+  
Sbjct: 131 ATYRKYEVTRRHLAEFIQSKYNLSDISIKEITPMFITDFELYLRTTCKCGFNTTAKFMQF 190

Query: 140 MRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQQFKSFWSEGSQ---PRLA 195
            + +   A     +  +P  + + R ++   G    T+++++          +    R  
Sbjct: 191 FKRIILIARNNGILIGDPFANYKIRLEKVDRGY--LTEDEIKIILKKKMVSERLEQVRDV 248

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQ-----NNIFSIKTQKTGTIITVELPDG----FMKLLA 246
           F F  +SGL   D       +++     N     K QKT   + V L D       K   
Sbjct: 249 FIFSCFSGLAYVDVANLKEDNIRKSFDGNLWIITKRQKTNIDVNVPLLDIPKMILEKYKG 308

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA-GAT 303
             P GK    I+N K        + + K  A   G+ K  + H  R   AT +  A G  
Sbjct: 309 KLPNGKVLPIISNQK-------LNAYLKEIADVCGIKKNLTFHLARHTFATTTTLAKGVP 361

Query: 304 AHELMATYGWKTVDQAETYTKGADRI 329
              +    G   ++  + Y +  +  
Sbjct: 362 IETVSKMLGHTNIETTQIYARITNNK 387


>gi|327314473|ref|YP_004329910.1| site-specific recombinase, phage integrase family [Prevotella
           denticola F0289]
 gi|326946304|gb|AEA22189.1| site-specific recombinase, phage integrase family [Prevotella
           denticola F0289]
          Length = 409

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 38/281 (13%), Positives = 89/281 (31%), Gaps = 24/281 (8%)

Query: 83  HWGSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSG----VESRKHTPSSAIQF 136
                      +  +  + I +K    D  + ++T + I       V+ +     ++  +
Sbjct: 129 RAKGTYPAYFYTRRTLAEFIQKKFHSKDIAFGQLTEQFIHDYQSFVVDDKGLAIETSRHY 188

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK-----SFWSEGSQ 191
           L  ++ + + A ++ Y           PK++ +  +  ++E  ++ +        S    
Sbjct: 189 LAIIKKVCRKAYKEGYADKCFFAHFSLPKQEEKTPKALSRESFEKIRDLVIPEHCSSHIL 248

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVELPDGFMKLLA 246
            R  F F  Y+G   +D+      +L  +         + +K      V+L    ++L+ 
Sbjct: 249 ARDLFLFACYTGTSYADAVSVTRDNLFTDDEGSLWLKYRRKKNELQACVKLLPEALELIE 308

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS-ADAGAT 303
                                      K  A  A +  + + H  R   A++   +AG  
Sbjct: 309 KYNDDTRPTLFPMLYHP----NLRRLMKCLAVLADIKEDLTYHAGRHSFASLITLEAGVP 364

Query: 304 AHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
              +    G   +   + Y K     +L     + I +  D
Sbjct: 365 IETICKMLGHSNLQTTQRYAK-VTPKKLFEDMDKYIEATKD 404


>gi|255012221|ref|ZP_05284347.1| putative integrase/transposase [Bacteroides fragilis 3_1_12]
 gi|313150062|ref|ZP_07812255.1| integrase [Bacteroides fragilis 3_1_12]
 gi|313138829|gb|EFR56189.1| integrase [Bacteroides fragilis 3_1_12]
          Length = 393

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 56/300 (18%), Positives = 112/300 (37%), Gaps = 45/300 (15%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS---GVESRKHTPS 131
           I+ +R      SL  +++ +  S  + +     D  +  +T + I S    ++ + +  +
Sbjct: 108 IAFFRNEIAKSSLKESTKRNHLSTLELLRGYKKDVSFSDLTFEFISSFDHYLQQKGYHTN 167

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINP-CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           +  + +  ++     A+ +EY+ I        + K         + E++ + +S   +G 
Sbjct: 168 TIAKHMKHLKRHINVAINKEYMEIQKYAFRKYKIKSIENSHTHLSPEELGKIESLELDGR 227

Query: 191 QPRL-----AFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDGF 241
             +L     AF F  Y+GLR SD      +++    Q      K+ KT T + + L    
Sbjct: 228 FMKLEKTKDAFLFCCYAGLRYSDFTNLSPENIVKMHQETWLIYKSVKTNTEVRLPL---- 283

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK------------ATKAGVNK--SAH 287
                +   GK    +N  +        + +FK +            A  +G+NK  S H
Sbjct: 284 ----YLLFEGKGIEVLNKYQ-----DNLADFFKLRDNSNVNKELLIIAKLSGLNKRISFH 334

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
             R  +AT+   +G     +    G K+V   + YT   D     I   R +    ++  
Sbjct: 335 TARHTNATLLIYSGVNITTVQKLLGHKSVKTTQVYTNIMD-----ITIVRDLEKSKNNRK 389


>gi|53724407|ref|YP_104507.1| phage integrase family site specific recombinase [Burkholderia
           mallei ATCC 23344]
 gi|121600634|ref|YP_994580.1| phage integrase family site specific recombinase [Burkholderia
           mallei SAVP1]
 gi|124383851|ref|YP_001027514.1| phage integrase family site specific recombinase [Burkholderia
           mallei NCTC 10229]
 gi|126449643|ref|YP_001082589.1| prophage DLP12 integrase [Burkholderia mallei NCTC 10247]
 gi|251767075|ref|ZP_02265905.2| prophage DLP12 integrase [Burkholderia mallei PRL-20]
 gi|254175100|ref|ZP_04881761.1| prophage DLP12 integrase [Burkholderia mallei ATCC 10399]
 gi|254183974|ref|ZP_04890565.1| site-specific recombinase, phage integrase family [Burkholderia
           pseudomallei 1655]
 gi|254201585|ref|ZP_04907949.1| prophage DLP12 integrase [Burkholderia mallei FMH]
 gi|254206919|ref|ZP_04913270.1| prophage DLP12 integrase [Burkholderia mallei JHU]
 gi|254357475|ref|ZP_04973749.1| prophage DLP12 integrase [Burkholderia mallei 2002721280]
 gi|52427830|gb|AAU48423.1| site-specific recombinase, phage integrase family [Burkholderia
           mallei ATCC 23344]
 gi|121229444|gb|ABM51962.1| site-specific recombinase, phage integrase family [Burkholderia
           mallei SAVP1]
 gi|124291871|gb|ABN01140.1| site-specific recombinase, phage integrase family [Burkholderia
           mallei NCTC 10229]
 gi|126242513|gb|ABO05606.1| prophage DLP12 integrase [Burkholderia mallei NCTC 10247]
 gi|147747479|gb|EDK54555.1| prophage DLP12 integrase [Burkholderia mallei FMH]
 gi|147752461|gb|EDK59527.1| prophage DLP12 integrase [Burkholderia mallei JHU]
 gi|148026539|gb|EDK84624.1| prophage DLP12 integrase [Burkholderia mallei 2002721280]
 gi|160696145|gb|EDP86115.1| prophage DLP12 integrase [Burkholderia mallei ATCC 10399]
 gi|184214506|gb|EDU11549.1| site-specific recombinase, phage integrase family [Burkholderia
           pseudomallei 1655]
 gi|243063894|gb|EES46080.1| prophage DLP12 integrase [Burkholderia mallei PRL-20]
          Length = 369

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 37/208 (17%), Positives = 69/208 (33%), Gaps = 23/208 (11%)

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
            +  + +  +  +   AV  E++   P L  +R K   + +R  T    ++  +      
Sbjct: 136 GTVRRVIGVLMAVLHAAVEWEWLDRAPVL--KRRKTTPKRVRWITPAQAERLLAELPAHL 193

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGFMKLLA 246
                F   L +GLR S+        +              K    ITV L D  + +L 
Sbjct: 194 SDMARF--SLETGLRRSNVTGLEWSQVDLARRVAWIHPDQAKARKAITVPLSDTAVDVLR 251

Query: 247 MTPIGK------ETFFI---NNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATI 296
                +      E  F+   +   Q   A      ++    +AG+ +   H +R   A+ 
Sbjct: 252 RQLSKRRAAEHIERVFVYRGSAIGQPNTAA-----WRKALKRAGIRDFRWHDLRHTWASW 306

Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324
               G     L    GW+T++  + Y  
Sbjct: 307 HVQRGTPLQVLKELGGWETLEMVQRYAH 334


>gi|301024203|ref|ZP_07187907.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 69-1]
 gi|300396658|gb|EFJ80196.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 69-1]
          Length = 179

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 42/146 (28%), Gaps = 15/146 (10%)

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252
                 + GLR S+     +  L+       I+  K G      L    +  +      +
Sbjct: 1   MILLAYFHGLRVSELLSLQLSDLELTTEKIYIQRIKNGFSTVHPLQKEEVIAITNWLNER 60

Query: 253 ETF-----------FINNDKQKMNATQFSIWFKAKATKAG--VNKSAHGVRKFSATISAD 299
            +            F++   + ++  +F     A    AG  +    H +R       AD
Sbjct: 61  NSLNVKHFNDNPWLFVSRTGKPLSRQRFYNIVSAAGKNAGLNIKVHPHMLRHACGYSLAD 120

Query: 300 AGATAHELMATYGWKTVDQAETYTKG 325
            G     +    G + +     YT  
Sbjct: 121 NGVDTRLIQDYLGHRNIRHTVIYTAS 146


>gi|227887411|ref|ZP_04005216.1| phage integrase family site-specific recombinase [Escherichia coli
           83972]
 gi|300983731|ref|ZP_07176712.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 45-1]
 gi|301049115|ref|ZP_07196096.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 185-1]
 gi|227835761|gb|EEJ46227.1| phage integrase family site-specific recombinase [Escherichia coli
           83972]
 gi|300299061|gb|EFJ55446.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 185-1]
 gi|300408460|gb|EFJ91998.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 45-1]
 gi|315292311|gb|EFU51663.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 153-1]
          Length = 179

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 42/146 (28%), Gaps = 15/146 (10%)

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252
                 + GLR S+     +  L+       I+  K G      L    +  +      +
Sbjct: 1   MILLAYFHGLRVSELLSLQLSDLELTTEKIYIQRIKNGFSTVHPLQKEEVIAITNWLNER 60

Query: 253 ETF-----------FINNDKQKMNATQFSIWFKAKATKAG--VNKSAHGVRKFSATISAD 299
            +            F++   + ++  +F     A    AG  +    H +R       AD
Sbjct: 61  NSLNVKHFNDNPWLFVSRTGKPLSRQRFYNIVSAAGKNAGLNIKVHPHMLRHACGYSLAD 120

Query: 300 AGATAHELMATYGWKTVDQAETYTKG 325
            G     +    G + +     YT  
Sbjct: 121 NGVDTRLIQDYLGHRNIRHTVIYTAS 146


>gi|145630449|ref|ZP_01786230.1| prophage integrase [Haemophilus influenzae R3021]
 gi|144984184|gb|EDJ91621.1| prophage integrase [Haemophilus influenzae R3021]
          Length = 293

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 90/239 (37%), Gaps = 15/239 (6%)

Query: 98  YFDQIIRKSGDFDYRKITTKHIRSG------VESRKHTPSSAIQFLTSMRVLFKWAVRQE 151
           +      + G+     +T++ I++          +  +P++  ++ +S+      A +  
Sbjct: 35  HAKYWRDEIGNKLLSSLTSEDIQNAIPTHVVRTGKILSPATQNRYRSSIMRAINLAKQAG 94

Query: 152 YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCR 211
           ++ + P   + +     + IR  T+++ ++     +      +  +F L +G + ++   
Sbjct: 95  WIDVVP--YIAKNSEPKKRIRWITEKEAERLLDSLNLNWMKDVC-QFALLTGAKMTEILS 151

Query: 212 AGVQHLQ-NNIFSIKTQ---KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT 267
                +   N  +I T    K+G   ++ L D  + L+      + + ++ +        
Sbjct: 152 MTWDKINFANKMAIVTGDIAKSGRGRSLPLSDDAINLIKERMKYQVSPYVFHSGTGKLRD 211

Query: 268 QFSIW-FKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             S   FK    +A + N   H +R   A+     G     L    GW+T++  + Y  
Sbjct: 212 DISRRDFKRALQRANIKNFRFHDLRHTWASWHIQRGTPLMVLKELGGWETIEMVQKYAH 270


>gi|300820460|ref|ZP_07100612.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 119-7]
 gi|300527245|gb|EFK48314.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 119-7]
          Length = 206

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 29/189 (15%), Positives = 60/189 (31%), Gaps = 17/189 (8%)

Query: 174 WTKEDMQQFKSFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQK 228
            T++++ +        S   + R         G R S+     +  +       +I+  K
Sbjct: 6   LTQDEVYRLMDAAQSMSFPERNRCLIMMAFIHGFRASELLDLRLSDIDASGKQLNIRRIK 65

Query: 229 TGTIITVELPDGFMKLLAMT---------PIGKETFFINNDKQKMNATQFSIWFKAKATK 279
            G   T  L      L+ +           +  +  F++  ++ ++   F    +    +
Sbjct: 66  NGFSTTHPLLPDEYNLIKLWLKQRKLIENGVEGDWLFLSRKRRPISRQHFFSIIREAGKR 125

Query: 280 AGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
           AG+      H +R       AD G     L    G + +     YT  ++  R      +
Sbjct: 126 AGLAVKAHPHMLRHACGFALADNGVDTRLLQDYLGHRNIQHTVRYT-ASNAARFKGVWKK 184

Query: 338 RISSVVDSD 346
            +   V SD
Sbjct: 185 SLVKTVPSD 193


>gi|228950100|ref|ZP_04112285.1| Integrase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228809627|gb|EEM56063.1| Integrase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
          Length = 380

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 52/383 (13%), Positives = 109/383 (28%), Gaps = 66/383 (17%)

Query: 17  RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYI------NSPRKKPTT 70
           +H   IYY            Y   +     + + +        +             P T
Sbjct: 2   KHFNSIYYHLIKRFEV----YTMSNREKERFKALVEKHKNNMPWYVIEYLEMKTALSPAT 57

Query: 71  LKWLISEYRKSAHW---GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127
           L   I+E+ K   W     LAV +     +  D  I          +   H+   ++   
Sbjct: 58  LYAYITEFEKFFKWIILKRLAVVNGNVVTNITDIPIETLQTLPLNDVNRFHMY--LQGEG 115

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQE-------YVAINPCLSVERPKRKTEGI--------- 171
               +  +  ++++ LFK+ V+         Y++ N    +E  K K +           
Sbjct: 116 IETRAINRTFSALKSLFKYLVQNSEDEHGKSYLSRNVMEKIELHKEKVDAAARADEVANI 175

Query: 172 -------------------RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRA 212
                                  +   +++  F  +  +       +L +GLR S+    
Sbjct: 176 IFNDNEDVAFLRFLINDYATILKETSTRKYNYFLRDKERDIALISLILGTGLRVSELASL 235

Query: 213 GVQHLQNNIFSIKTQKTGTI-----ITVELPDGFMKLLAMT------PIGKETFFINNDK 261
            +  +     +IK  + G        T    D   + + +       P  ++  F+   +
Sbjct: 236 TLSSINFRQGTIKVTRKGNKKSSILATKSCLDDVQEYMKVRLEKYMCPPEEDILFVTRYQ 295

Query: 262 QKMN---ATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
            K             +  ++     +S H +R   AT           L    G  +V+ 
Sbjct: 296 GKYTQLSVRAIQNLVEKYSSAFDEKRSPHKLRHTYATNHYKENKDLVLLRDQLGHTSVEV 355

Query: 319 AETYTKGADRIRLGIKNSRRISS 341
              YT   +  +   +   R+  
Sbjct: 356 TSIYTNINNEKKR--EAIDRLEK 376


>gi|170076497|ref|YP_001733136.1| phage integrase family protein [Synechococcus sp. PCC 7002]
 gi|169887359|gb|ACB01067.1| phage integrase family [Synechococcus sp. PCC 7002]
          Length = 297

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 38/299 (12%), Positives = 89/299 (29%), Gaps = 26/299 (8%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           TL  + +E+ +      LA ++  S+ +    ++   G +    +  K ++  ++  +H 
Sbjct: 3   TLATVATEFLERP---GLAPSTVRSYTTALLPLLANYGAWPITHLDRKTLQDYLQQLEHL 59

Query: 130 PSSAIQFLTSM-RVLFKWAVRQEYVAINPCLSV--ERPKRKTEGIRP------WTKEDMQ 180
             +  +   ++ + L  +AV Q+Y+  NP   +   +P                T + +Q
Sbjct: 60  SYTTHRRHQAILQSLLNFAVEQQYLVTNPLARLPQRKPNPNKGEHHSDQTIRYLTPDQLQ 119

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPD 239
                 ++  +       L  +G R ++        +       +    G          
Sbjct: 120 VLYQATAQQPRLHCLVRLLHRTGARIAELLSLDYDQVDLQERRFQVVGKGNKQRWCFYSP 179

Query: 240 GFMKLLAM-----TPIGKETFFINND--KQKMNATQFSIWFKAKATKAGV-----NKSAH 287
              + L +             F       + ++   +   +    T             H
Sbjct: 180 DVDESLGIYLKYYRHPEHPALFTAQQPLTKAVSRLSYRTAYSDWRTMTQREPQLQGLRFH 239

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346
            +R   AT           L A  G + +     Y K   +    I      + + DS+
Sbjct: 240 DLRHTFATE-RVGLMGIETLRALMGHENIQTTLRYQKVTSQRAETIAKEALTTLIQDSN 297


>gi|145633250|ref|ZP_01788981.1| integrase [Haemophilus influenzae 3655]
 gi|145634375|ref|ZP_01790085.1| integrase [Haemophilus influenzae PittAA]
 gi|229845313|ref|ZP_04465445.1| integrase [Haemophilus influenzae 6P18H1]
 gi|144986096|gb|EDJ92686.1| integrase [Haemophilus influenzae 3655]
 gi|145268355|gb|EDK08349.1| integrase [Haemophilus influenzae PittAA]
 gi|229811766|gb|EEP47463.1| integrase [Haemophilus influenzae 6P18H1]
          Length = 414

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 46/272 (16%), Positives = 95/272 (34%), Gaps = 20/272 (7%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKHT 129
           + W   EYRK+    + + N +    S  ++ ++   G     +IT        +  +  
Sbjct: 112 VAWAWLEYRKTK--KNFSDNYQKDVISLINRCLLPHFGHLPISQITAPMALKAFKQYQDE 169

Query: 130 PS--SAIQFLTSMRVLFKWAVRQEYVAINPCLSV--ERPKRKTEGIRPWTKEDMQQF--- 182
                  + +     +  +A+ ++ ++ NP  ++  E      E  +    ED+ +F   
Sbjct: 170 GHLEKLKRTIQKHNEIMTYALHRDLISFNPTANIAKEFDSPTVEHFKTLKPEDLSEFMFT 229

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIITVELP 238
                   Q R    + L +  R +++  A  + +              K G    + L 
Sbjct: 230 LQNAQIHLQTRYLILWQLLTMTRPNEAATAKWEDIDEKNRIWTIPAEQMKRGIEHRITLS 289

Query: 239 DGFMKLLAMTP--IGKETFFINNDKQKMNA--TQFSIWFKAKATKAGVNKSAHGVRKFSA 294
              + LL       G +T+   + K   +   TQ +     +   AG    AHG+R  ++
Sbjct: 290 RQALALLGQIKKLSGGKTYLFPSVKNPQSHVNTQTANAAIKRMGYAG-KLVAHGLRSIAS 348

Query: 295 TISADAGATAHELMATYGWKTVDQAET-YTKG 325
           T   D G  +  +         D+ +T Y +G
Sbjct: 349 TYLNDQGFNSDLIEVALSHLNSDRVKTAYDRG 380


>gi|75762532|ref|ZP_00742389.1| DNA integration/recombination/inversion protein [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
 gi|74489971|gb|EAO53330.1| DNA integration/recombination/inversion protein [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
          Length = 180

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 33/169 (19%), Positives = 67/169 (39%), Gaps = 8/169 (4%)

Query: 176 KEDMQQFKSFWSE-GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234
            E +QQ K +  E  ++  + F   + +GLR SD  +  V  +Q +  S++  KTG    
Sbjct: 10  PEQIQQIKEYLKEKNARNYILFVMGINTGLRISDILKLKVGDVQGSHISMREIKTGKQKR 69

Query: 235 VELPDGFMKLLAMTPIGKET--FFINNDK---QKMNATQFSIWFKAKATKAGVNK-SAHG 288
           +++     + L     G+E   + + + K   + +  +      K+ A + G+++   H 
Sbjct: 70  IQITPSLKRELKWFNEGREVEEYLLKSRKGKNRPIGRSMAYKILKSTAAEFGLDEIGTHT 129

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
           +RK               LM  +   +      Y  G ++  +    SR
Sbjct: 130 LRKTYGYHMYMQTKNIALLMEIFNHSSEKVTLRYI-GVNQDAMDKAMSR 177


>gi|325297479|ref|YP_004257396.1| integrase family protein [Bacteroides salanitronis DSM 18170]
 gi|324317032|gb|ADY34923.1| integrase family protein [Bacteroides salanitronis DSM 18170]
          Length = 409

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 35/235 (14%), Positives = 77/235 (32%), Gaps = 18/235 (7%)

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           ++ +     +   +L  ++ + + A ++ Y       +   P++     R  ++ED ++ 
Sbjct: 175 MDVKGLAVDTVRHYLAILKKVCRIAYKEGYAERCHFANFTLPQKTERTPRALSREDFEKI 234

Query: 183 KSFWSEGSQ-----PRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTI 232
           +       +      R  F F  Y+G   +D+      +L  +         + QK    
Sbjct: 235 RDVEIPAWRTTHILVRDLFLFACYTGTAYADAVSVTRDNLYTDDEGCLWLKYRRQKNELR 294

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVR 290
            +V+L    + L+                            K+ A  AGV+ +   H  R
Sbjct: 295 ASVKLLPEALALIEKYHDDNRPTLFPMVYHP----NLRRHMKSLAVLAGVSSTLCYHQAR 350

Query: 291 KFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
              A++   +AG     +    G   +   + Y +     +L     R I +  D
Sbjct: 351 HSFASLITLEAGVPIETISRMLGHSNIQTTQVYAR-VTPKKLFEDMDRYIEATKD 404


>gi|312109737|ref|YP_003988053.1| integrase [Geobacillus sp. Y4.1MC1]
 gi|311214838|gb|ADP73442.1| integrase family protein [Geobacillus sp. Y4.1MC1]
          Length = 180

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 54/154 (35%), Gaps = 7/154 (4%)

Query: 176 KEDMQQFKSFWSE-GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234
            E ++  K F  E   +  + F   + +GLR SD  +  V  ++    SI+ +KTG    
Sbjct: 10  PEKIEAIKQFLKEQNKRNYMLFLIGINTGLRISDILKLKVGDVKGTHISIREKKTGKQKR 69

Query: 235 VELPDGFMKLLAMTPIGKET--FFI---NNDKQKMNATQFSIWFKAKATKAGVNK-SAHG 288
           + +     + L     GKE   + I   N   + +  +      +  A +  +++   H 
Sbjct: 70  IRITPSLKRELNRYIEGKEDDEYLIKSRNGRNKPIGRSMAYKILRKVAERFHLDEIGTHT 129

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           +RK               L   +   +      Y
Sbjct: 130 LRKTFGYHFYQQTKDVAMLQEIFNHSSPAITLKY 163


>gi|254497238|ref|ZP_05110046.1| putative lambdoid prophage Rac integrase [Legionella drancourtii
           LLAP12]
 gi|254353466|gb|EET12193.1| putative lambdoid prophage Rac integrase [Legionella drancourtii
           LLAP12]
          Length = 401

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 53/281 (18%), Positives = 98/281 (34%), Gaps = 33/281 (11%)

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVES 125
             +T+  L+ EY + A   +L  ++   +    +  +    G+   + +++  IR+ V  
Sbjct: 91  VKSTVGELLKEYMEIAE-KTLEPSTFNGYRKTCEAHLYPAFGNIPIKDLSSMIIRNYVTK 149

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-------PWTKED 178
            + T  +    LT +R     A+    +  NP   +   K   +  R       P+ +E+
Sbjct: 150 LELTLKTIRNILTPLRNTLDQALNDGMITSNPLDRLVLSKLVDKKTRSSNWEVDPFNQEE 209

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSI---------KTQ 227
           ++   S   +  Q R  F+F  YSGLR S+        +   N I  +         K  
Sbjct: 210 IKAILSEAKD--QARNLFQFAFYSGLRTSELIALEWGDIDWLNGIVRVSRAVVLKKEKGT 267

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINND--KQKMNATQF--SIWFKAKA-----T 278
           KT +    ++      L A+    K TF             T +      +         
Sbjct: 268 KTKSGQR-DVLLLPPALEALQNQKKFTFLEGARVFYNPRTNTAWETDGQIRKTCWTHILK 326

Query: 279 KAGVNKS-AHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           KAGV     +  R   A++   AG  +  +    G K  + 
Sbjct: 327 KAGVRYRNPYQTRHTYASMMLSAGENSLWVAKQMGHKDTEM 367


>gi|182415936|ref|YP_001821002.1| integrase family protein [Opitutus terrae PB90-1]
 gi|177843150|gb|ACB77402.1| integrase family protein [Opitutus terrae PB90-1]
          Length = 400

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 48/270 (17%), Positives = 102/270 (37%), Gaps = 22/270 (8%)

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121
            +P+    T++  I+ +       +   ++R   ++  ++   K GD    +I  +  + 
Sbjct: 106 GAPQGGRKTVREAINTWLLE---KAQNTDTRHGVQAVLNRFSGKFGDRPINEIMVRDCQR 162

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVR--QEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
            ++    + +S + +   +  +F+WA +  ++++  NP L V  PK+    I   T  D 
Sbjct: 163 FIDESGVSANSKVHYARDISTVFEWATKPGRQWLHDNPWLHVTLPKKSPVKIGILTPTDA 222

Query: 180 QQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNN------IFSIKTQKTGT 231
            +  +  +   +  L  +    L++GLR ++  R     L+            +  KT  
Sbjct: 223 GKLLTAAAAQPKTPLLGSLVLGLFAGLRTAERARIDWAALRLTGARPFVEIKAEWAKTSA 282

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRK 291
             TVEL    ++ L           + N + K+N   +   F A    A V    +G+R 
Sbjct: 283 RRTVELCPAAVEWLN---------LVLNREGKVNPANYEGRFAALCAAAEVKYPKNGMRH 333

Query: 292 FSATISADAGATAHELMATYGWKTVDQAET 321
             A+        A  + A  G   +   + 
Sbjct: 334 SFASYRFAVLRDAAAVAADLGHDNLRTLKR 363


>gi|197124068|ref|YP_002136019.1| integrase [Anaeromyxobacter sp. K]
 gi|196173917|gb|ACG74890.1| integrase family protein [Anaeromyxobacter sp. K]
          Length = 275

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 35/230 (15%), Positives = 74/230 (32%), Gaps = 22/230 (9%)

Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER--PKRKTEGIRPW 174
           +       +    P++    +  +  L+   V  +    NPC  + R   +       P 
Sbjct: 7   RRFIEAKLAEGLNPATIRILVALLSALYVGLVEDKVATANPCHGLPRSTRRLMKPTHDPR 66

Query: 175 TKEDMQQF----KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ- 227
           T   +++     + F        +A+   + +GLR  +       H+        ++   
Sbjct: 67  TTPFIERVGDIRRIFLLLPPPLSIAYAIGVLAGLRTGEIFALKWLHVDLTARRIHVRESV 126

Query: 228 ----KTGTIITVELPDGFMKLLA--MTPIGKETFF---INNDKQKMNATQFSIWFKAKAT 278
               K      V + D  + +LA      G E      + +D +K++      + +    
Sbjct: 127 KGPLKDKDSRVVPILDPLLPILAEWKLKSGAEGLVIPPLRSDGRKIDKATPGNFLRPVLN 186

Query: 279 KAGVNKSAHGV----RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             G+ +   G     R   A+  A +G +  +L    G  +V   E Y  
Sbjct: 187 ALGLARPGLGWYEATRHTFASQWALSGGSIEKLKEILGHYSVVMTERYAH 236


>gi|83816861|ref|YP_446969.1| phage integrase family site specific recombinase [Salinibacter
           ruber DSM 13855]
 gi|83758255|gb|ABC46367.1| site-specific recombinase, phage integrase family, truncation
           [Salinibacter ruber DSM 13855]
          Length = 191

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 27/179 (15%), Positives = 58/179 (32%), Gaps = 17/179 (9%)

Query: 166 RKTEGIRPWTKEDMQQFKS----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--N 219
           R  +  R  T+E+  +  S     +    +  L    +L +GLR S++     + +   +
Sbjct: 3   RPDKLPRVLTEEETDRLLSEPNQRYFGPHRDYLYMRVMLKAGLRASEATALRPERIDLMS 62

Query: 220 NIFSIKTQKTGTIITVELPDGFMKLLAM-------TPIGKETFFINNDKQKMNATQFSIW 272
               ++  K     T+ + +  ++ L              +     +   ++  +     
Sbjct: 63  GKLMVREGKGAKDRTLWIGEELLEELQGWMDRRQEKAPKADYLLPTSKGTQVATSHLRRS 122

Query: 273 FKAKATKAGVNK----SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
            K  A  AG+ +    S H +R   AT    +      +    G   +     YT   D
Sbjct: 123 VKRYARDAGIEEVERVSPHTLRHTFATRLYRSAGKIRLVQKALGHSDLSTTMIYTHVVD 181


>gi|13475204|ref|NP_106768.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
 gi|14025955|dbj|BAB52554.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
          Length = 342

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 36/311 (11%), Positives = 86/311 (27%), Gaps = 41/311 (13%)

Query: 67  KPTTLKWLISEYRKS--AHWGSLAVNSRISFESYFDQI--------IRKSGDFDYRKITT 116
           +PT L   I  + +        ++ ++  S+                R         IT 
Sbjct: 5   QPTDLGRPIVRFFQEYLPTLRGMSRHTIRSYRDGMILFLGFATTDCRRPIESLTIADITA 64

Query: 117 KHIRSGVES----RKHTPSSAIQFLTSMRVLFKWAVRQE---YVAINPCLSVERPKRKT- 168
             +   + S    R ++ ++    L ++    ++ + +       +   L +   +    
Sbjct: 65  DRVGRFLASLESERGNSIATRNTRLAALHTFARFLIAETPEHMATLQQVLGIPFKRGARV 124

Query: 169 EGIRPWTKEDMQQFKS----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN---I 221
             I      +++   +        G +    F  +  +G R  +     V+ ++      
Sbjct: 125 APIEYLETTEVEALLAGIDRKTPAGRRDYAMFSLMFNTGARVQEVIDLRVRDVRLEPPHQ 184

Query: 222 FSIKTQKTGTIITVELPDG---FMKLLAMTP----IGKETFFINNDKQKMNATQFS-IWF 273
                +     +    P       +L+           +  F+N     M       +  
Sbjct: 185 VRFTGKGNKIRLCPIWPRTAQLLKELIQKQTNDEDPADQHIFLNGRGAPMTRFGVRYLLQ 244

Query: 274 KAKATKAGVNKS-------AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG- 325
           K  A  A V  +        H +R  +A     AG     +    G  +++    Y +  
Sbjct: 245 KRVAAGAEVAPTLSDKRIHPHSLRHTTAIHLLKAGVDFVTISQWLGHASLNTTMRYARAD 304

Query: 326 ADRIRLGIKNS 336
            D  R  +   
Sbjct: 305 IDLKRQALAQV 315


>gi|71902101|ref|ZP_00684136.1| Phage integrase [Xylella fastidiosa Ann-1]
 gi|71728132|gb|EAO30328.1| Phage integrase [Xylella fastidiosa Ann-1]
          Length = 263

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 37/233 (15%), Positives = 78/233 (33%), Gaps = 11/233 (4%)

Query: 99  FDQIIRKSGDFDYRKITTKHIRSGVESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAIN 156
              +           I +  I      +    + S+A ++L  +R + + A    ++ I+
Sbjct: 17  LRWLASHFDGKKLAAIDSDLILRVATLKAAETSASTANRYLALIRSILRRAFDI-WLWID 75

Query: 157 PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216
            C  +      T+ +R  T    +   S        R    F L +GLR ++  +     
Sbjct: 76  RCPHILLFPEPTKRVRWLTPVQARSLLSELPL--HQRAMVIFALSTGLRQANVLKLRWDQ 133

Query: 217 LQNNIFSIK----TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW 272
           +      ++      K    I + L    +++L     G+   ++     +      +  
Sbjct: 134 VDLVRKVLRIPADQAKGRQAIRIPLSLHALQVLQAQ-RGQHHEWVFTYCGRSIRWVNTRA 192

Query: 273 FKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +     +AG+ N   H +R   A+  A AG   + L    GW++      Y  
Sbjct: 193 WHRALQRAGIQNFRWHDLRHTWASWHAQAGTPLYVLQDLGGWQSESMVRRYAH 245


>gi|225028560|ref|ZP_03717752.1| hypothetical protein EUBHAL_02839 [Eubacterium hallii DSM 3353]
 gi|224954126|gb|EEG35335.1| hypothetical protein EUBHAL_02839 [Eubacterium hallii DSM 3353]
          Length = 286

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 48/275 (17%), Positives = 90/275 (32%), Gaps = 38/275 (13%)

Query: 88  AVNSRISFESYFDQIIRKSGDFD-----YRKITTKHIRSGVESRKHTPSSAIQFLTSMRV 142
           +  +   +     +  +   +        ++I   + RS +E     PSS    L S+  
Sbjct: 23  SQATIEKYMRDVRKFFQYVEEMGKKEGITKEIVLSYKRSLIEEYA--PSSVNSMLASLNH 80

Query: 143 LF--KWAVRQEYVAINPCLSVERPKRKTEGIRP----WTKEDMQQFKSFWSEGSQPRL-- 194
            F                  V+  K +    R      TKE+  +      +  + RL  
Sbjct: 81  FFKVNHWYEC---------IVKSLKIQQRTFRAKERELTKEEYYRLLRAAQKEGKYRLYC 131

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA----MTPI 250
             + +  SG+R S+     V+ +     ++   K  T  T+ LP    +LL        I
Sbjct: 132 ILQTICGSGIRVSELKYITVKAVTRGR-AVIFMKNKTR-TILLPPKLCRLLKDYCKQEKI 189

Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGATAHEL 307
                FI      ++ +      K     AGV +     H +R   A     A      L
Sbjct: 190 TSGMIFITRRGNPVDRSNILHEMKNLCGTAGVEREKVFPHNLRHLFAYTYYKAEKDIAHL 249

Query: 308 MATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
               G  +++    YT G+     G +  +++S++
Sbjct: 250 ADILGHSSINTTRIYTMGS-----GEEEMKQLSNL 279


>gi|150005005|ref|YP_001299749.1| putative transposase [Bacteroides vulgatus ATCC 8482]
 gi|294776367|ref|ZP_06741846.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
 gi|149933429|gb|ABR40127.1| putative transposase [Bacteroides vulgatus ATCC 8482]
 gi|294449783|gb|EFG18304.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
          Length = 412

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 47/266 (17%), Positives = 90/266 (33%), Gaps = 35/266 (13%)

Query: 90  NSRISF---ESYFDQIIR---KSGDFDYRKITTKHIRSGVESRKHT----PSSAIQFLTS 139
            +   +     +  + I+      D   ++IT   I       + T     ++  +F+  
Sbjct: 131 ATYRKYEVTRRHLAEFIQSKYNLSDISIKEITPMFITDFELYLRTTCKCGYNTTAKFMQF 190

Query: 140 MRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQQFKSFWSEGSQ---PRLA 195
            + +   A     +  +P  + + R ++   G    T+++++          +    R  
Sbjct: 191 FKRIILIARNNGILIGDPFANYKIRLEKVDRGY--LTEDEIKIILKKKMVSERLEQVRDV 248

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQ-----NNIFSIKTQKTGTIITVELPDG----FMKLLA 246
           F F  +SGL   D       +++     N     K QKT T + V L D       K   
Sbjct: 249 FIFSCFSGLAYVDVANLKEDNIRKSFDGNLWIITKRQKTNTDVNVPLLDIPKMILEKYKG 308

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA-GAT 303
             P GK    I+N K        + + K  A   G+ K  + H  R   AT +  A G  
Sbjct: 309 KLPNGKVLPIISNQK-------LNAYLKEIADVCGIKKNLTFHLARHTFATTTTLAKGVP 361

Query: 304 AHELMATYGWKTVDQAETYTKGADRI 329
              +    G   ++  + Y +  +  
Sbjct: 362 IETVSKMLGHTNIETTQIYARITNNK 387


>gi|38637703|ref|NP_942677.1| putative integrase/recombinase [Ralstonia eutropha H16]
 gi|32527041|gb|AAP85791.1| putative integrase/recombinase [Ralstonia eutropha H16]
          Length = 332

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 40/281 (14%), Positives = 88/281 (31%), Gaps = 37/281 (13%)

Query: 74  LISEYRKSAHWGSLAVNS-RISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP-- 130
           L+ + + S H  S   ++ R   +    ++ R+    ++ +I    I + ++  +     
Sbjct: 19  LMQQRQASPHTISSYRDTFRQFLKFALQRLHRQPSRMNFEEIDAPLIVAFLDDLEKRQGV 78

Query: 131 --SSAIQFLTSMRVLFKWAVRQEYVAINPC--------LSVERPKRKTEGIRPWTKEDMQ 180
              S    LT++   F++A         P         L++   +     ++  T++++ 
Sbjct: 79  SVRSRNLRLTAIHSFFRYA-----ALETPAHSAQIQRVLAIPSKRFTRTLVQFLTRQEVD 133

Query: 181 QFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTG----- 230
              +   +    G +      F + +GLR S+        L   I   ++    G     
Sbjct: 134 ALLAAPDQRTWSGRRDHAFLLFAVQTGLRLSEMTGLKRDDLVLGIGAHVRVIGKGRKERC 193

Query: 231 TIITVELPDGFMKLLAMTPIG-KETFFINNDKQKMNATQFSIWFKAKATKAGVNK----- 284
           T I           L     G  +  F N   +++               A         
Sbjct: 194 TPIVRSTLAVLKAWLREPKRGEGDVLFPNARGERLTVHGVQYLLNKHRETASKVCPSLKH 253

Query: 285 ---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
              + H +R   A     AG     +    G ++V+  + Y
Sbjct: 254 KQVTVHRLRHTMAMDLLQAGVDRSVIALWLGHESVETTQIY 294


>gi|315608575|ref|ZP_07883559.1| integrase/recombinase [Prevotella buccae ATCC 33574]
 gi|315249746|gb|EFU29751.1| integrase/recombinase [Prevotella buccae ATCC 33574]
          Length = 343

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 43/303 (14%), Positives = 92/303 (30%), Gaps = 42/303 (13%)

Query: 85  GSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIR---------SGVESRKHTPSS 132
             ++ ++  S+   FD ++    +       +I  KH+               RK T ++
Sbjct: 23  RGVSHHTLRSYAYTFDLMLDYMLEVKKIPAERIELKHLTRDCTTGFLDWLQTERKCTDNT 82

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPC----LSVERPKRKTEGIRPWTKEDMQQFKSFWS- 187
               L ++    K+ ++ E +    C    ++++   + +  I   + E M+   +    
Sbjct: 83  RNARLAAIHAFCKY-LQYEDIKRIGCWQQIMTIKAKHKVSGTISSLSIEAMKTLLAEIPT 141

Query: 188 ---EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT--QKTGTIITVELPDGFM 242
              +G +       L  SG R  +        L   + +  T   K      V L    +
Sbjct: 142 DTMQGRRHLAILSLLYESGARVQELINLTPNDLSLELPAYVTLFGKGRKKRVVPLQKRLV 201

Query: 243 KLLAM---------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--------S 285
            ++ +             K   F NN   K++ +  +      A    V          S
Sbjct: 202 SIMRLYLAEHKLDLPGREKRHLFYNNRGAKLSNSGIAHIITLYANDVRVKHPGLLPDKIS 261

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345
            H  R   A     AG     +    G  ++   E Y     + +       +  + +  
Sbjct: 262 PHSFRHSKAMHLLQAGVNLVYIRDILGHASIKTTEIYAHADSKQKR--DALEKAYANITP 319

Query: 346 DDP 348
           + P
Sbjct: 320 ERP 322


>gi|301166079|emb|CBW25653.1| putative integrase/recombinase [Bacteriovorax marinus SJ]
          Length = 366

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 36/267 (13%), Positives = 85/267 (31%), Gaps = 24/267 (8%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQ 135
            +Y    +    ++ +  + +   ++  ++  D     I+   +   + + +   S+  +
Sbjct: 65  KQYYGYMN-KENSLETLYNRKCVLEKHTKQWDDRPIETISYNDVLGLITTLE---SNKHE 120

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195
            L  ++ +F   V    +  NP   +  PK+    ++  T  ++ +  ++  E       
Sbjct: 121 VLKYIKQVFNLQVDMRTIPSNPASKITFPKKTDRKLQAMTVGEITKLLTYMKE--VDHSW 178

Query: 196 FEFLLYS---GLRCSDSCRAGVQHLQ---NNIFSIKTQKTGTIIT----------VELPD 239
           F     +   GLR  ++       +    N++F  +  K    I           V +  
Sbjct: 179 FSIFYVTYQFGLRHGEALGIKFSDIDWERNHLFIQRAWKKKEKIWGPPKNGTSRFVPMNS 238

Query: 240 GFMKLLAMT-PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS-AHGVRKFSATIS 297
              + L        E  FI    +K    + +   K      G+  +  H +R    T  
Sbjct: 239 QVREYLLKLYKGKHEDEFILPRIKKWEGGKGAEVLKEIQRHIGIKLTNYHSLRASFITHL 298

Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324
              G     +    G K +     Y +
Sbjct: 299 LRKGQDIISVQEMVGHKELKTTMGYIR 325


>gi|282600645|ref|ZP_06257673.1| site-specific recombinase, phage integrase family [Subdoligranulum
           variabile DSM 15176]
 gi|282571684|gb|EFB77219.1| site-specific recombinase, phage integrase family [Subdoligranulum
           variabile DSM 15176]
          Length = 375

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 50/336 (14%), Positives = 118/336 (35%), Gaps = 32/336 (9%)

Query: 6   RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
           R  P++ ++        ++  KG GR+I+           A    +     +  Y     
Sbjct: 39  RRKPYMVRKTIG-----WHLDKGKGRQIQDFIIIGYAETRAEGLKMLAEYNQNPYDVDTA 93

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
           K   T   +   + KS  + +++ ++   +E+ + ++     D  +R+I    ++  +E+
Sbjct: 94  KV--TFAEVYERWSKS-KYPTISHSNVKGYEASY-KVCGFLYDKAFREIKLCDLQLVIET 149

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE----RPKRKTEGIR-PWTKEDMQ 180
                 +  +       ++ +A++ +    +    V+    R K      R  +TKE++ 
Sbjct: 150 CGKNYPTLKKLKGLFNQMYAYAMKNDICNKDYSQFVDLAGYRDKNPNRRDRNIFTKEELA 209

Query: 181 QFKSFWSEGSQPRLAFEFLL-YSGLRCSDSCRAGVQ--HLQNNIFSIKTQKT-----GTI 232
              + W+  + P      +L Y+  R S+      +  HL+   F +   KT        
Sbjct: 210 ---TLWAHKANPYCQILLMLNYNACRISEFLDLKKENVHLEKQYFDVVESKTENGIRKVP 266

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA-TQFSIWFKAKATKAGVNKSAHGVRK 291
           I  ++   +   +  +P   E      D + ++       ++     + G+    H  R 
Sbjct: 267 IADKMLPFYKGWMERSP--CEYLLCTTDGKHLDYFNYCDTYWDPLMEEYGMKHKPHDTRH 324

Query: 292 FSATISADAGATAHELMATYGWKTVDQA---ETYTK 324
              ++ ADAG     +       +   +     YT 
Sbjct: 325 TCISMMADAGVNP-TIQKKIAGHSGAMSLTERVYTH 359


>gi|63146885|emb|CAI79468.1| integrase [Lactobacillus delbrueckii subsp. lactis]
          Length = 305

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 35/278 (12%), Positives = 85/278 (30%), Gaps = 35/278 (12%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
               I  Y+     G++   +   +      +   + +      T    +  + +   T 
Sbjct: 12  FAQWIEVYKD----GAVRERTLDKYWLSHRHLQEIAPNLKLVDTTRLEYQQILNTFAQTH 67

Query: 131 SSA--IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
             A  + F   ++ +   A  + Y+  +P   +    ++    +     + +        
Sbjct: 68  EKATVMDFHHQLKAMLLDAYDEGYIQRDPTRKIVVKGKEPSEKKAKYLNEFELKLLLRHL 127

Query: 189 GSQPRLAFEFLLY----SGLRCSDSCRAGVQHLQNNIFSIKTQKT--------------- 229
                  F++++     +GLR S++     + +      I   KT               
Sbjct: 128 DLSAFPNFDWMILLIAKTGLRFSEALGLTKEDIDLEQQMINVDKTWDYKSYTGSFKPTKN 187

Query: 230 -----GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284
                   I  +L     +++   P G+  F     K+  N+T  +   K    +  +  
Sbjct: 188 SSSVRKVPIDWKLAMQLNQVIQDLPNGEPIF---AQKRVFNST-VNNLLKKHCKELNIPV 243

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
            S HG+R   A++   AG +   +    G   +   + 
Sbjct: 244 ISVHGLRHTHASLLLFAGVSIASVANRLGHADMTTTQQ 281


>gi|254497030|ref|ZP_05109859.1| putative integrase/recombinase XerD [Legionella drancourtii LLAP12]
 gi|254353746|gb|EET12452.1| putative integrase/recombinase XerD [Legionella drancourtii LLAP12]
          Length = 233

 Score = 79.3 bits (194), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 66/212 (31%), Gaps = 14/212 (6%)

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
           S K         L +    + +      +V  N  L++E            T+++++ F 
Sbjct: 5   SAKKMAQKVSSLLKAQNPNYDYLRDVFRFVREN--LNIEVTTTPKRLPYVPTEDEIRLFY 62

Query: 184 S-FWSEGSQ-PRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPD 239
              W      P L  + LLY+G+R S+     +  +   N    I   K      V    
Sbjct: 63  KTVWESHDIIPMLIVKVLLYTGIRVSELINIQLCDIDLTNCRIKINQGKGKKDRVVPFSP 122

Query: 240 GFMKLLAM-----TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKF 292
            F + LA+         +   F +  ++                 AG+ +S   H +R F
Sbjct: 123 AFKETLALHLKQYKNENRMFLFESGFRRHYTDRGIRKILMRYTRLAGIERSISPHKLRHF 182

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324
             T           +    G    D  E Y+K
Sbjct: 183 LFTWLKKQNIDDAFIQPYSGHAKRDSLEIYSK 214


>gi|194466460|ref|ZP_03072447.1| integrase family protein [Lactobacillus reuteri 100-23]
 gi|194453496|gb|EDX42393.1| integrase family protein [Lactobacillus reuteri 100-23]
          Length = 365

 Score = 79.3 bits (194), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 30/301 (9%), Positives = 79/301 (26%), Gaps = 32/301 (10%)

Query: 49  SALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD 108
                    +       +K         ++ ++     +A  +   +      +    G 
Sbjct: 39  QIWAADNENKLNKGIDIEKSVVFTDYYDQWVETYKSPKVADVTLARYNITSGALKSFFGK 98

Query: 109 FDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVR----QEYVAINPCLSVERP 164
              ++IT    +  +     T   A   +  +  + +  VR     +Y+  +    VE  
Sbjct: 99  TKIKEITRDTYQQFINEYGAT--HASHTVKMVNGIVRACVRSAILDDYLIKDFTQGVELI 156

Query: 165 KRKTEGIRP--WTKEDMQQFKSFWSEGSQP-----RLAFEFLLYSGLRCSDSCRAGVQHL 217
               + ++    +K++++       E         R      +Y+G+R S+        +
Sbjct: 157 SNPDKTLKVEYLSKKEIEALLKAAVENDDRSMYASRYMIATAIYTGMRLSEIQALTWNDI 216

Query: 218 -------------QNNIFSIKTQKTGTIIT---VELPDGFMKLLAMTPIGKETFFINNDK 261
                          N    K  K  + +    V      +             F+    
Sbjct: 217 NWLKQTISITKSWDANKHDFKPTKNKSSVRTIKVNQNLLNLLSRLRQRHISNMVFMTQFG 276

Query: 262 QKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
               +   +   K   ++  ++K     H +R     +    G   + +    G   +  
Sbjct: 277 SIPTSNAVNKVLKKLLSQLKIHKEGFHFHSLRHSHVALLLADGVDIYAISKRLGHSEIST 336

Query: 319 A 319
            
Sbjct: 337 T 337


>gi|326569172|gb|EGE19234.1| phage integrase [Moraxella catarrhalis BC1]
          Length = 411

 Score = 79.3 bits (194), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 61/372 (16%), Positives = 114/372 (30%), Gaps = 47/372 (12%)

Query: 13  KERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           + +   GK  +    G G    +        +    + L     +   I +P     T K
Sbjct: 49  RYKDSKGKWRW---HGLGAYPAVTGAMARKLVQEKFADLALGLDELTAIPAP-PTAQTFK 104

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
            +  E+        L   ++  + S  +  I    G      I+ +   +     + TP+
Sbjct: 105 SVALEWYNEPSIQKLDDGTKSKYLSLLEKHIFPIMGKKAIGDISRQVWLTFFRKLQETPN 164

Query: 132 ---------SAIQFLTSMRVLFKWAVRQEY--VAINPCLSVERPKRKTEGIRPWTKEDM- 179
                    +A + L     ++++A+ QE   V  NP   +E    + E   P     + 
Sbjct: 165 PQTGKPIIETANRALQVCSRIYRFALTQELAGVEFNP---LEHLHERLEKHEPKQLAHVS 221

Query: 180 --QQFKSFWSEGSQP----RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI----KTQKT 229
                K      + P    RL  + L +  LR ++        +  N           K 
Sbjct: 222 EQDLHKLLLDIKTIPSEITRLGVQLLSHLFLRPNEVLDGEWAEIDFNKGIWEIPAHRMKK 281

Query: 230 GTIITVELPDGFMKLLAMTPI---GKETFFINNDKQKMNATQFSIWFKAKATKAGVN--K 284
                V L +  + LL             F +  K + NA      F+    + G +  +
Sbjct: 282 RRPHVVPLSEQALALLQQLHSLTGFDTHLFPSRAKDRKNAH---QRFRMALNRLGYHDTQ 338

Query: 285 SAHGVRKFSATIS----ADAGA--TAHELMATYGWKTVDQAETYTKGA---DRIRLGIKN 335
           + HG R  ++T       + G       +      K    A  Y K     DR  +    
Sbjct: 339 TLHGFRHVASTKLNNYTDENGKKFDGRVIEFALAHKVQGVAGVYNKAEYLHDRKIINQWY 398

Query: 336 SRRISSVVDSDD 347
           S  +  +V ++D
Sbjct: 399 SDWLDGLVKAND 410


>gi|226356242|ref|YP_002785982.1| integrase [Deinococcus deserti VCD115]
 gi|226318232|gb|ACO46228.1| putative Integrase [Deinococcus deserti VCD115]
          Length = 444

 Score = 79.3 bits (194), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 43/366 (11%), Positives = 102/366 (27%), Gaps = 61/366 (16%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEY 78
           G+I +  R  +    +      +        A+  +  + +    P     T+  +++EY
Sbjct: 26  GRIRWRVRVQYPDGTKERRSGTARTKTEAQRAIITAQKEAQEGKRPVSDTLTVGEMVTEY 85

Query: 79  RKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI--- 134
            ++    + +  + ++ ++ +   ++ +        I  + +R+  E       +     
Sbjct: 86  MRAKG-ATWSQRTALNNDALYTRHVLPELAHLKAAGIDARRLRAYFEWLSEKRPTPDGEG 144

Query: 135 -----------QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI------RPWTKE 177
                      Q    +   +K A+    +  NP            G       + +  E
Sbjct: 145 VRPPLGYSGQRQIHVLLSGAYKRAIADGLLRDNPATYARPLSPTKGGTVRAAKVKYFDPE 204

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL---QNNIFSIKTQKTGTIIT 234
           ++ +F     +  +  L   FL  +GLR  +        +   +     ++  KT +   
Sbjct: 205 ELGRFIEAALK-DRWALPLAFLALTGLRIGECLALTWADVQKDKTGADFVEVSKTRSEFE 263

Query: 235 -----------------------VELPDGFMKLLAMTPI----------GKETFFINNDK 261
                                  + L +   + + +                  F + D 
Sbjct: 264 GTYYTGGPKTAAGVRRVYLGGDALALIEDMRRRVKIEARAEGYQGEGLKDHAPVFPSVDG 323

Query: 262 QKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA- 319
           + M         +     AGV   S H +R  + T     G     + A  G   V    
Sbjct: 324 RPMRQDSLRQIMRRTCEVAGVPLLSPHALRHSTGTYLISRGHDPVSVAALLGHAQVSTTL 383

Query: 320 ETYTKG 325
             Y   
Sbjct: 384 NIYAHA 389


>gi|325275240|ref|ZP_08141200.1| putative phage integrase [Pseudomonas sp. TJI-51]
 gi|324099632|gb|EGB97518.1| putative phage integrase [Pseudomonas sp. TJI-51]
          Length = 430

 Score = 79.3 bits (194), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 49/318 (15%), Positives = 105/318 (33%), Gaps = 43/318 (13%)

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
           +N+    P T + L   + K    G++  ++  + +S    +    GD D +  T   + 
Sbjct: 119 VNASSTDPITFEGLSELFIKERQ-GNVEGSTLKAIQSNCRTLSGFLGDLDIKTHTRADMV 177

Query: 121 SGVESRKHTPS--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
           +  E         +  + LT +  +  WAV   ++  +    ++  K      RP+++++
Sbjct: 178 ALKERVMDGRKVLTVNKLLTQLSTVMDWAVNNGFLERSYDKGLKIEKGADSERRPFSRDE 237

Query: 179 MQQFKSFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTII 233
           +                R A    + +G R  +  +     ++  + I  I   K     
Sbjct: 238 VATIMDHANALPATDWKRWALSLGVLTGARIGELYQLTQDDIKQLDGITVIDINK----- 292

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW--------FKAKAT------- 278
                D   K L      ++   + +     +   F  W        FKAKA        
Sbjct: 293 -----DEKGKTLKNDFSIRQVPLV-DGAYGFSLKTFLEWVASEPGKLFKAKAHYFNKPLN 346

Query: 279 ---------KAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
                    KAG ++S H +R   + +   A        +  G  + +       G+ R+
Sbjct: 347 EALREPLGLKAGSDQSFHSLRHSLSGLLKAAATPEVIAQSITGHSSGNITYDLYAGSQRV 406

Query: 330 RLGIKNSRRISSVVDSDD 347
            +   +     +++D  D
Sbjct: 407 PVRTLHEALTKALIDYSD 424


>gi|294629143|ref|ZP_06707703.1| phage integrase family site-specific recombinase [Streptomyces sp.
           e14]
 gi|292832476|gb|EFF90825.1| phage integrase family site-specific recombinase [Streptomyces sp.
           e14]
          Length = 267

 Score = 79.3 bits (194), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 35/224 (15%), Positives = 68/224 (30%), Gaps = 38/224 (16%)

Query: 156 NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ 215
           N   +V+ P  +    +P+T  + +QF    S   +    +E  L +GLR  +       
Sbjct: 37  NVARNVKSPAPRPRRFKPFTASEARQFLHAASS-DRLHALYELALRTGLRKGELLGLHWD 95

Query: 216 HLQ----------------NNIFSIKTQKTG-TIITVELP--------------DGFMKL 244
            L                     +    KT  +   + LP              +   + 
Sbjct: 96  DLDLNTGTAAIHRSLQHTRTGGLTFLQTKTRASERRIVLPTECIDSLKIHREQQEEARRA 155

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGAT 303
             M        F       +     +  F     +AG+ +   H +R  +AT+  + G  
Sbjct: 156 AGMDWSDNGLVFTTPTGSPLEPANLTRSFSRLLNRAGLRRIRFHDLRHSTATLLLEQGVD 215

Query: 304 AHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
              +    G   +     Y     R+RL  +    + + +D+ D
Sbjct: 216 LVVIKELLGHAHIG---VYAHV--RLRLQRQAINALGNALDATD 254


>gi|288919364|ref|ZP_06413698.1| integrase family protein [Frankia sp. EUN1f]
 gi|288349253|gb|EFC83496.1| integrase family protein [Frankia sp. EUN1f]
          Length = 411

 Score = 79.3 bits (194), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 27/252 (10%), Positives = 58/252 (23%), Gaps = 44/252 (17%)

Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA------------------INPCLS 160
            R       + P +       +R  + + + + +                     NP   
Sbjct: 120 TRKAYLDDSYQPRTIRHSNAVLRTFYGFWIERGHAPLVNPVPLSRQTGRRPHAHHNPREP 179

Query: 161 VER-------PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG 213
                     PK      R    E             + R      + +  R SD     
Sbjct: 180 FRTEGRLRYNPKIPRRPPRAMPDERWNDLFGAMRSN-RDRALLALAVSTAARASDLLGLR 238

Query: 214 VQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLA-------MTPIGKETFFINNDK--- 261
              L   + +  ++ + TG    +         L          P     ++    +   
Sbjct: 239 CTDLDWGDQLIRVRRKGTGAEQWLPASPEAFVWLRLYLADIGRLPTDAVLWWTLRRRCDD 298

Query: 262 -----QKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGA-TAHELMATYGWKT 315
                +           +    + G N + H +R   A       A +  ++    G   
Sbjct: 299 GVPARRPFTYDALRAVLRRVNEQLGSNWTMHDLRHTCAIRMVRDEALSLRDVQTILGHVH 358

Query: 316 VDQAETYTKGAD 327
           +   + Y +  D
Sbjct: 359 LTTTQIYVEDDD 370


>gi|229170556|ref|ZP_04298204.1| Phage integrase [Bacillus cereus AH621]
 gi|228612905|gb|EEK70082.1| Phage integrase [Bacillus cereus AH621]
          Length = 336

 Score = 79.3 bits (194), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 34/277 (12%), Positives = 79/277 (28%), Gaps = 31/277 (11%)

Query: 85  GSLAVNSRISF----ESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSM 140
              +  ++  +      +   I  K G           I     S+K+  ++  +  T +
Sbjct: 48  KKRSDRTKKIYLHDLSHFLRYIKEKVGTIQELSHNEMEIYFYELSKKYAATTLRRKKTVV 107

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEG--IRPWTKEDMQQFKSFWSEGSQ-PRLAFE 197
           +   ++      +  +    +++   K E    R    E++ +      + +      F 
Sbjct: 108 QQFLRYVYDNNGLTDDYSTRIKKVSVKKEALVNRDLFPEEVNEILDTLKKTNHFMYALFF 167

Query: 198 FLLYSGLRCSDSCRAGVQHL------QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251
            L  +GLR  +   A    L         +  +  +           D    +  +  + 
Sbjct: 168 LLTTTGLRIEEVANAKWADLVFHSSLNTYLLRVVGKGNKAREVRIFEDVLEDICRLRQLR 227

Query: 252 KET----------FFINNDKQKMNATQFSIWFKAKATKAGVN--------KSAHGVRKFS 293
           ++T          F    D     A   S +   K  +  +          + H  R F 
Sbjct: 228 RQTSKLDVSSTSAFLPKADGSHYRADYLSKYVAEKIEETNLPFLRHRRDRITPHTCRHFF 287

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
           A      G    ++    G +++   E Y +   R +
Sbjct: 288 ANYLMGKGVELKKIRDYLGHESIMTTERYLRERTRRQ 324


>gi|224539056|ref|ZP_03679595.1| hypothetical protein BACCELL_03956 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519324|gb|EEF88429.1| hypothetical protein BACCELL_03956 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 337

 Score = 79.3 bits (194), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 41/238 (17%), Positives = 87/238 (36%), Gaps = 21/238 (8%)

Query: 111 YRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP-KRKTE 169
           +     K     +  ++ +P++   ++ +++ ++   +       NP L  +   K ++ 
Sbjct: 65  FTPERLKEYEDWLAGQQSSPNTISTYMRTLQAVYNRWMSPGIEGYNPVLFKDVYTKVESR 124

Query: 170 GIRPWTKEDMQQFKS----FWSEGSQPRLAFEFLLYS--GLRCSDSCRAGVQHLQNNIFS 223
             R  T E M+Q ++      +   Q  L +  L++   G+   D        L+N   +
Sbjct: 125 TKRALTAEQMEQLRNTDFSVLTLRQQQVLTYFLLMFMLRGMPFIDLAHLRKSDLRNRRIT 184

Query: 224 IKTQKTGTIITVELPDGFMKLLA--MTPIGKETFFINNDK-------QKMNATQFSIWFK 274
            +  KTG ++ V++P   M+LL         E  F                      + +
Sbjct: 185 YRRHKTGKLMVVDVPPDAMRLLQKYRDKTDSEYLFPLLHGGLFMEEHHHRYQETLRHFNR 244

Query: 275 AKATKA-----GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
             A        GV+ S++  R   AT++  +G     +  + G  ++    TY K  D
Sbjct: 245 ELARLMKQLLPGVSVSSYTARHTWATLAYHSGVPVGLISQSLGHSSIRVTMTYLKPFD 302


>gi|71900917|ref|ZP_00683032.1| Phage integrase [Xylella fastidiosa Ann-1]
 gi|71729329|gb|EAO31445.1| Phage integrase [Xylella fastidiosa Ann-1]
          Length = 325

 Score = 79.3 bits (194), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 42/300 (14%), Positives = 91/300 (30%), Gaps = 30/300 (10%)

Query: 45  PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR 104
             Y +AL     K       +    ++K ++  Y ++     L+  +   +E     +  
Sbjct: 35  KEYGAAL----GKYAVFVGKKPTVDSVKDMVWGYIEAKR-PKLSAKTIEGYERNAANLCA 89

Query: 105 KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP 164
             G     +I T  I   + ++ +    A +    +   + W     Y   +P   ++  
Sbjct: 90  VFGHLRPDEIETSDIFRYLTTKGNV--QANRDKALLSASYSWHRLGGYKGSDPTKRLQ-- 145

Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL-YSGLRCSDSCRAGVQHLQNNIFS 223
            R  E  R    ED++   S  ++ S         L  +G+R  D+ R  +  L ++ F 
Sbjct: 146 YRNEEKPRDRYVEDIE-LNSILAKASHKLSCIATFLELTGMRQGDALRVKLADLDDDGFI 204

Query: 224 IKTQKTGTIITVELPDGFMKLLAMT----PIGKETFFI--------NNDK-QKMNATQFS 270
               K+     +   D     +           + +          +         +   
Sbjct: 205 YWNSKSKKKQGLHRSDALTACIERARELWRRENQVWLFESHPKGKHSKRGIGPYTPSGLR 264

Query: 271 IWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADR 328
             ++    KAG+ +   H +R  + +       T  E     G       +  Y +   R
Sbjct: 265 AMWRVARAKAGLSDVRLHDLRAKAGSD----RETVEEAQQVLGHSDAKVTQRHYRRRMTR 320


>gi|186687205|ref|YP_001870348.1| phage integrase family protein [Nostoc punctiforme PCC 73102]
 gi|186469508|gb|ACC85307.1| phage integrase family protein [Nostoc punctiforme PCC 73102]
          Length = 309

 Score = 79.3 bits (194), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 41/262 (15%), Positives = 93/262 (35%), Gaps = 25/262 (9%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF-LTSMRVLFKW 146
           A +S  +++ Y  + +    D   +K+T + +     S      S  +  + + + L  +
Sbjct: 36  ASSSIRAYQRYTRRFLDFL-DKPLKKVTYEDLVEYASSFGGNAESTKRIYIAAAKSLISF 94

Query: 147 AVRQEYVAINPCLSVERPKRKTEGI-RPWTKEDMQQFKSFWSEGS-------------QP 192
           A +  Y+  N  ++++  +       R   + D++      S+               + 
Sbjct: 95  AHKIGYLPFNVGMALKLGELPDVINERYLDEADIKLLVRAASKHLTDAKTPKRQYTALRN 154

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDGF-MKLLAM 247
            L  + L  +GLR S+ C      L     +    ++  K     T+ +      +L+  
Sbjct: 155 LLIIKLLYQAGLRASEICELTWGDLTPRGDSGQVYVRKAKGSKNRTILIKPKLWAELIEF 214

Query: 248 T--PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGAT 303
                  +  F +     ++        KA A +AG+++  SAH +R    + + + G  
Sbjct: 215 KDNAHSNQAVFPSQKGGHLDRQNLHPIVKAIALEAGLSELVSAHWLRHAHGSHAIERGTN 274

Query: 304 AHELMATYGWKTVDQAETYTKG 325
              +  T G   +   + Y K 
Sbjct: 275 PVLVKETLGHANLAITDRYLKA 296


>gi|257887017|ref|ZP_05666670.1| site-specific recombinase [Enterococcus faecium 1,141,733]
 gi|257823071|gb|EEV50003.1| site-specific recombinase [Enterococcus faecium 1,141,733]
          Length = 391

 Score = 79.3 bits (194), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 49/345 (14%), Positives = 101/345 (29%), Gaps = 65/345 (18%)

Query: 40  ESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF 99
                  +   + G     EY      K  T++  + ++  +    ++   +RI   +  
Sbjct: 26  SHEEAERFAKIVEGEIASEEYTQK-NPKNLTIEKFMDDWINNYK-MNVKEGTRIVHRANI 83

Query: 100 -DQIIRKSGDFDYRKITTKHIRSGVESR-----------KHTPSSAIQFLTSMRVLFKWA 147
              I    G +   K T    +  +                + ++A     ++   FK A
Sbjct: 84  KMYITPYIGKYKLDKYTRADHQRFINQLLTKKGLGRTKEGLSVTTAKSINATLSNAFKKA 143

Query: 148 VRQEYVAINPCLSVERPKRKTEGIRP--WTKEDMQQFKSFWSEGSQPRLAFEFLLYS--- 202
           ++  Y+  NP   VE P+  ++  +   +T +  + F  F  +  +  + + F L     
Sbjct: 144 IQLGYIKNNPTSFVEFPRNPSDKKKVKYYTFDQSELFLEFAKK-EKSFIWYPFFLIIFDQ 202

Query: 203 GLRCSDSCRAGVQHLQ---------------------NNIFSIKTQKTGTIIT-VELPDG 240
           GLR S++       +                        +      KT +    + +   
Sbjct: 203 GLRKSEALGLQWADIDFSQNTLNINRERLGAAEKGPNKGLIITDDTKTPSGTRSLPMTKR 262

Query: 241 FMKLLAMT-----------PIGKET---FFINNDKQK-------MNATQFSIWFKAKATK 279
             K L              P   +     FIN   +              S   + +A+ 
Sbjct: 263 VKKALLTLRNQVIKEFGFLPETDDHEAFIFINTYGKNKGIPIRDRTVNGASHRIEKRASL 322

Query: 280 AGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              + + H  R   A  +  AG    ++    G K V   + Y  
Sbjct: 323 --PHITVHDGRHTFAARTRQAGIPLEDIKDFLGHKDVSTTQVYAH 365


>gi|312111596|ref|YP_003989912.1| integrase [Geobacillus sp. Y4.1MC1]
 gi|312112616|ref|YP_003990932.1| integrase [Geobacillus sp. Y4.1MC1]
 gi|311216697|gb|ADP75301.1| integrase family protein [Geobacillus sp. Y4.1MC1]
 gi|311217717|gb|ADP76321.1| integrase family protein [Geobacillus sp. Y4.1MC1]
          Length = 379

 Score = 79.3 bits (194), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 51/329 (15%), Positives = 105/329 (31%), Gaps = 79/329 (24%)

Query: 75  ISEYRKSAHWGSLAVNSRISF----ESYFDQIIRKSGDFDYRKITTKHI-------RSGV 123
           + +Y K       + N+  ++    + YF  +  K    DYR++  + +       R+  
Sbjct: 28  VVKYLKYLDTTGKSRNTLKTYCYALKQYFVFLQEK--KKDYREVRLEDLVEFVAWLRNPY 85

Query: 124 ESRKHTP----------SSAIQFLTSMRVLFKWAVRQEYVAIN----------------- 156
           ES K TP           +    +T++   + +  R E +  +                 
Sbjct: 86  ESAKVTPLQPVKAKKTEKTINLTITAVTNFYDYLYRNEEIQNDMVDKLLKQVFTGGRTRY 145

Query: 157 -----------PCLS-VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGL 204
                      P    + + K   + ++  TKE++QQ     +   + RL  + L  +GL
Sbjct: 146 KDFLYHVNKNKPSNRHILKVKEPRKKLKVLTKEEVQQLIE-ATTNIRDRLLIQLLFETGL 204

Query: 205 RCSDSCRAGVQHL-----QNNIFSIKTQ---------KTGTI-ITVE------LPDGFMK 243
           R  ++    ++         +   +  +         KTG   I V       L D   +
Sbjct: 205 RIGEALSLFIEDFIFDHKNGHRIRLVNRGELENGAKLKTGEREIYVSQALMNLLDDYLYE 264

Query: 244 LLAMTPIGKETFFINNDKQ----KMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISAD 299
           ++    +     F+    +     M  +     FK    K G++   H +R   AT+   
Sbjct: 265 VVDELDLDTNFVFVKLRGKNIGQPMTYSDVEALFKRLRKKTGIHVHPHLLRHTHATMYYQ 324

Query: 300 AGATAHELMATYGWKTVDQAE-TYTKGAD 327
                 ++    G   +      Y   +D
Sbjct: 325 QTKDIKQVQERLGHSQIQTTMNLYLHPSD 353


>gi|257064113|ref|YP_003143785.1| site-specific recombinase XerD [Slackia heliotrinireducens DSM
           20476]
 gi|256791766|gb|ACV22436.1| site-specific recombinase XerD [Slackia heliotrinireducens DSM
           20476]
          Length = 451

 Score = 79.3 bits (194), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 47/320 (14%), Positives = 87/320 (27%), Gaps = 67/320 (20%)

Query: 66  KKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
               T+   I  + ++    G ++  +  ++ +    I    G     K+T   I     
Sbjct: 71  AGKVTVSEFIETWLEARQTTGKVSEFTIKNYHARLKTIEPYIGKKKLNKVTAAEIERAYA 130

Query: 125 SRKHTPSSAIQFLTSMRVL----FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
             K   S +   L  + +L    F+ A   + +  NPC  VE P       +  T+E+  
Sbjct: 131 QLKAKKSLSDTTLNKLHILLKSVFEKACDYDLILRNPCNKVESPSVDKPDRKSLTQEEGA 190

Query: 181 QFKSFWSEGSQPRLAFEF---------------------------------LLYSGLRCS 207
                     + R+  E                                   L +GL   
Sbjct: 191 TLLHKLDL-EEARIIQEMDEKEERQVKKGNQFGRSSIRGLANLGFTIGTRIALATGLHRG 249

Query: 208 DSCRAGVQHLQ------------NNIFSIKTQKTGT-IITVELPDGFMKLLA-------- 246
           +      +++                  IK  KTG    T+ + +     L         
Sbjct: 250 EVFGLTWKNVNLRQNTITVAQTLTKEGEIKDPKTGAGRRTISIDESTAAHLRMWRKRQRE 309

Query: 247 -----MTPIGKET-FFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISAD 299
                   +G  T    +   + +N   F  W+++    AG      H +R   AT+   
Sbjct: 310 ELAKLAIKLGDATPVCCSERGEWVNLANFERWWRSFRDDAGFEGLRFHELRHSQATLLLA 369

Query: 300 AGATAHELMATYGWKTVDQA 319
            G     +    G       
Sbjct: 370 NGTDLKTVQDRMGHANGAIT 389


>gi|226361766|ref|YP_002779544.1| transposase for insertion sequence element [Rhodococcus opacus B4]
 gi|226240251|dbj|BAH50599.1| putative transposase for insertion sequence element [Rhodococcus
           opacus B4]
          Length = 538

 Score = 79.3 bits (194), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 49/315 (15%), Positives = 93/315 (29%), Gaps = 52/315 (16%)

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLA-----VNSRISFESYFDQIIRKSGDF-DYRKITTK 117
           P   P  ++ +I  Y +      L       ++R +     + +     +     ++   
Sbjct: 97  PEPCPPKIREVIERYLQLRLDAKLDRPQTVHHARQALRRLVNWLGAHHPEVTSLAQLDRA 156

Query: 118 HIRSGVESRKHTPS----------SAIQFLTSMRVLFKWAVRQEYVAINPCLSV----ER 163
            I   +      PS          +    L ++    +     E+  + P   +    + 
Sbjct: 157 TIEEYMRWLPSCPSQHTGQPLTTTTVKHELNAIAGFCRDTAVWEWAEV-PGRPLLTSRDT 215

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL--YSGLRCSDSCRAGVQHLQNN- 220
           P+R     R   + ++    +   + + P      LL  +SG R  +  R     L    
Sbjct: 216 PRRPESIHRYLPQHELDAIMTAIEDLTDPLQRAALLLLRWSGARRDEIRRLTWDCLDTYP 275

Query: 221 ----IFSIKTQKTGTIITVELPDGFMKLLA-----------------MTPIGKETFFINN 259
                  I   K  T   V L       L                  +T    +  F+  
Sbjct: 276 GGHPRLRIPVGKGHTERIVPLHPDAAAALENAIGLARAQRSIARIDEVTGRRVDYVFVRR 335

Query: 260 DKQKMNATQFSIWFKAKATKAGV-------NKSAHGVRKFSATISADAGATAHELMATYG 312
            K     T F   F+      G+         SAH +R    T  A+ GA    +MA  G
Sbjct: 336 GKLLSVKTLFDEAFRTVCGATGLVDDRGSPTVSAHRLRHTLGTQLAEGGARIQTIMAVLG 395

Query: 313 WKTVDQAETYTKGAD 327
            ++   +  Y++ +D
Sbjct: 396 HRSATMSMIYSRISD 410


>gi|88706900|ref|ZP_01104599.1| phage integrase family [Congregibacter litoralis KT71]
 gi|88698822|gb|EAQ95942.1| phage integrase family [Congregibacter litoralis KT71]
          Length = 399

 Score = 79.3 bits (194), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 47/309 (15%), Positives = 106/309 (34%), Gaps = 28/309 (9%)

Query: 51  LTGSTPKREYINSPRKKPT--TLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSG 107
           + G +P RE      +     T      ++ +      +A ++R   +S +++ + ++ G
Sbjct: 77  VAGKSPAREKARDKTRVKDAETFGAWAEKWMRGYQ---MADSTRDMRKSVYNRELKKRFG 133

Query: 108 DFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE--R 163
           +    +IT + +R+  ++   +  P++A+     +  +++WA+ +     NP   V    
Sbjct: 134 NQKLSEITHEDLRAVTDAIVERGAPATAVHAREVVMQVYRWAIERGQKVENPAELVRPTS 193

Query: 164 PKRKTEGIRPWTKEDMQ-QFKSFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQNN 220
             R     R  +  ++   ++     G+ P  R A + LL + +R S+   A    +  +
Sbjct: 194 IARFEPRDRALSPPEIGLMYRYMDRVGTSPQYRAAIKLLLLTMVRKSELSNATWSEISFS 253

Query: 221 IFSIK----TQKTGTIITVELPDGFMKLLAMTPI---GKETFFINNDKQ--KMNATQFSI 271
                      K      V L    + +         G E    +       M+A   + 
Sbjct: 254 EALWTIPKERMKRRNPHLVFLSRQALDIFIALKTFAGGSEFVLPSRYDSDLPMSAATMNR 313

Query: 272 WFKAKATKAGVNK------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
                   A  N         H +R+ ++T+  +AG     +      +       Y K 
Sbjct: 314 VLALTYQAAQKNDEPLGKFGPHDLRRTASTLLHEAGYNTDWIEKCLAHEQKGVRAIYNKA 373

Query: 326 ADRIRLGIK 334
             R +    
Sbjct: 374 EYREQRAAM 382


>gi|325453286|gb|ADZ13589.1| integrase [Cronobacter phage ENT39118]
          Length = 392

 Score = 79.3 bits (194), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 62/337 (18%), Positives = 115/337 (34%), Gaps = 25/337 (7%)

Query: 8   PPFVTKERTR---HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64
           P  V   + R   +GK     R G GR   +        +  Y   L      + +    
Sbjct: 34  PKGVISFQFRYRFNGKQ---HRLGIGRYPEISLRDARLKVGEYKGVLEAGKDPKVFKVQI 90

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFES-YFDQIIRKSGDFDYRKITTKHIRSGV 123
           R +P TL   +  + ++    +L  +++  ++    D++           I         
Sbjct: 91  RSRP-TLHDCLRYWWENYVLIALRESTQNVYKRLVLDEMEGVFEGIPIEDIHVSTWVEFF 149

Query: 124 ESRKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV---ERPKRKTEGIRPWTKEDM 179
              +H  P  A + L  +R    W  R++Y+  +  L +   E  K+ + G    T   +
Sbjct: 150 TEHEHANPKKARKLLVHLRGAIDWCSRRQYIENSSLLKLSPREFGKKASVGETVLTYRQL 209

Query: 180 QQF----KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTII 233
            Q         +  S  RL    +LY G R S+   A         NI+++  +K+ T  
Sbjct: 210 AQIWLETDKTTATSSTKRLVKALILY-GARNSEMREALSHEFDFVENIWTLPAEKSKTDK 268

Query: 234 TVELP---DGFMKLLAMTPIGKETFFINNDKQ--KMNATQFSIWFKAKATKAGV-NKSAH 287
            +  P        L   T  GK+  F     +   ++    + + +    +  + N +AH
Sbjct: 269 IIRRPIFKQVLPLLQEATAGGKDILFPGAYDRDAPLSIGSTTRFIRLLRDQLNIGNFTAH 328

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             R+  AT  ++ G   H +    G         Y K
Sbjct: 329 DFRRTLATRLSEEGVAPHVIEKMLGHDLGGVLAIYNK 365


>gi|153808662|ref|ZP_01961330.1| hypothetical protein BACCAC_02961 [Bacteroides caccae ATCC 43185]
 gi|149128488|gb|EDM19706.1| hypothetical protein BACCAC_02961 [Bacteroides caccae ATCC 43185]
          Length = 397

 Score = 79.3 bits (194), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 49/292 (16%), Positives = 107/292 (36%), Gaps = 33/292 (11%)

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT-- 115
           ++ I+ P     +    ++ +R+     SL  ++R +  S  + +     +  +  +T  
Sbjct: 95  KDSIDKPVSNGRSF---LTFFREEVANSSLKESTRQNHLSTLELLQEFKKEVQFTDLTFE 151

Query: 116 -TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP- 173
                 + ++S+ +  ++  + +  ++     A+ ++Y+ +      +   +  EG    
Sbjct: 152 FVSSFDNYLQSKGYHLNTIAKHMKHLKRYVNVAINKDYMDVQKYAFRKYKIKSVEGRHSH 211

Query: 174 WTKEDMQQFKSFWSEGSQPRL-----AFEFLLYSGLRCSDSCRAGVQHL----QNNIFSI 224
            + E++ + +     G   +L     +F F  Y+GLR SD       ++    Q      
Sbjct: 212 LSPEELHKLEDLQLGGKYAKLQKTKDSFLFCCYAGLRYSDFTNLTSANIVEFQQETWLIY 271

Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK----QKMNATQFSIWFKAK---A 277
           K+ KTG  + + L         +   GK    +   K    +       S   K      
Sbjct: 272 KSVKTGIEVRLPL--------YLLFEGKGIHILQRYKDDLNRFFKLKDNSNINKELNILG 323

Query: 278 TKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
             A ++K  S H  R  +AT+   +GA    +    G K+V   + Y    D
Sbjct: 324 KLAEIDKRISFHTARHTNATLLIYSGANITTVQKLLGHKSVKTTQVYANIMD 375


>gi|238021157|ref|ZP_04601583.1| hypothetical protein GCWU000324_01055 [Kingella oralis ATCC 51147]
 gi|237868137|gb|EEP69143.1| hypothetical protein GCWU000324_01055 [Kingella oralis ATCC 51147]
          Length = 329

 Score = 79.3 bits (194), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 41/262 (15%), Positives = 88/262 (33%), Gaps = 25/262 (9%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVESRKHT 129
              ++  Y  +    ++    + S     + I++          +  +      ++R   
Sbjct: 57  FGDILERYLAT---ETVKKRGKRSETYRINGILKSSLAHIRLENLRPQDFADWRDARLEQ 113

Query: 130 PS--SAIQFLTSMRVLFKWAV-RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS-- 184
            S  S  + L+++  + + A+     +  NP   + +P+   E  R  + +++QQ     
Sbjct: 114 VSGDSVNRELSTLSAVCEHAMKEWGLLRENPVRKISKPQASKERTRRPSAQEIQQICEAL 173

Query: 185 FWSEGSQPRL-------AFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITV 235
            +SE   PRL       A  F + + +R  + C    +  H    I  +   K G    V
Sbjct: 174 HYSESEPPRLITQRCAIALLFAVETAMRAGEICALKWENIHFDRRIAHVAQSKNGHPRDV 233

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSA 294
            L    + LL                 K+ A    + F+      G+ +   H  R+ + 
Sbjct: 234 PLTKRAIALLEKLRTIDPISVF-----KIQAHSLDVLFRRARDNCGITDLHFHDSRREAL 288

Query: 295 TISADAGATAHELMATYGWKTV 316
           T  +        L    G +++
Sbjct: 289 TRLSKK-VPVETLAKISGHRSL 309


>gi|254512553|ref|ZP_05124619.1| phage integrase family protein [Rhodobacteraceae bacterium KLH11]
 gi|221532552|gb|EEE35547.1| phage integrase family protein [Rhodobacteraceae bacterium KLH11]
          Length = 158

 Score = 79.3 bits (194), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 45/131 (34%), Gaps = 8/131 (6%)

Query: 204 LRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLLA---MTPIGKETFFIN 258
           +R S+ C      + ++     +   K      V L    + LL         +   F  
Sbjct: 1   MRASEVCNLTTGDIDSDRMLIHVVQGKGRKDRKVMLSPDLLDLLRDYWCEARPEGWLFPG 60

Query: 259 NDK-QKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKT 315
             K   ++  Q +  F +    AG+NK  + H +R   AT   +AG     +    G   
Sbjct: 61  KPKINPISPRQLNRAFTSAKRMAGINKPATLHTLRHSFATHLLEAGTDVRVIQVLLGHAK 120

Query: 316 VDQAETYTKGA 326
           +     YTK A
Sbjct: 121 LTITAQYTKVA 131


>gi|145300733|ref|YP_001143574.1| phage integrase [Aeromonas salmonicida subsp. salmonicida A449]
 gi|142853505|gb|ABO91826.1| phage integrase [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 404

 Score = 79.3 bits (194), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 51/301 (16%), Positives = 96/301 (31%), Gaps = 26/301 (8%)

Query: 53  GSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVN-SRISFESYFDQIIRKSGDFDY 111
           G   K+  + S      +L+ L  E+ +S  +   +   +    ES    +    G    
Sbjct: 83  GLVRKQSKVASRLVSENSLEVLAREWHQS-QFALWSPGHATRVIESLEVDVFPDLGLVPI 141

Query: 112 RKITTKHIRSGV---ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE-RPKRK 167
            ++T   I   +   E R  T  +A + L  +  + ++A++    + NP   +    K  
Sbjct: 142 TELTAPMILEALRKVEKRGAT-ETAGRILQRVSAIMRYAIQTGRASYNPAQDLRGALKAT 200

Query: 168 TEGIRP-WTKEDMQQFKSFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223
            +  RP   + ++ +F             RLA   L+ +  R  +   A           
Sbjct: 201 KQEHRPALPRSELPEFFRRLEAEPLNPATRLALHLLMLTMTRPGEVRFARWDEFDMERAE 260

Query: 224 IK----TQKTGTIITVELPDGFMKL---LAMTPIGKETFFINNDK--QKMNATQFSIWFK 274
            +      K  T   V L    + +   L       E  F +  K    M+    S    
Sbjct: 261 WRIPAARMKMRTEHLVPLSRQALAVLDELHQLTGHCELLFPSERKLTNPMSENTLSYAMG 320

Query: 275 AKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA----DRIR 330
               K G+  + HG R  ++T   + G     +         ++       A    DR +
Sbjct: 321 RMGYK-GI-ATPHGFRALASTTLNEEGFDPDVIERQLAHAERNKVRAAYHRAEYLDDRRK 378

Query: 331 L 331
           L
Sbjct: 379 L 379


>gi|319777296|ref|YP_004136947.1| integrase [Mycoplasma fermentans M64]
 gi|318038371|gb|ADV34570.1| Integrase [Mycoplasma fermentans M64]
          Length = 253

 Score = 78.9 bits (193), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 39/249 (15%), Positives = 83/249 (33%), Gaps = 21/249 (8%)

Query: 87  LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKW 146
           +  N+  +++S       K  + + + +        +E+ K  P+S    + ++    ++
Sbjct: 1   MTKNTINAYKSAIKLFNLKYEEINKKNLLLFKTY-LIENYK--PNSVNLKIQALNRYLEF 57

Query: 147 AVRQEYVAINPCLSVERPKRKTEGIR--PWTKEDMQQFKSFWSEGSQP-RLAFEFLLYSG 203
                 +  +  L ++  K + +       +  D    K    + S        FL  +G
Sbjct: 58  ------IKKD-TLKLKFIKVQQKTFIDNVISDADYVFLKRKLKKESLDWYFVVRFLAATG 110

Query: 204 LRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK----LLAMTPIGKETFFINN 259
            R S+  +  V+H++     I   K G    + +P    K     L    +     F+N 
Sbjct: 111 ARVSELIKIKVEHVKLGYIDI-YSKGGKARRIYIPLKLKKEAIIWLENKCLNSGYIFLNR 169

Query: 260 DKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGATAHELMATYGWKTV 316
             + +     S   K  A K G+N      H  R   A    +       L    G +++
Sbjct: 170 FGKAITTRGISQQLKKYALKFGINPKVVYPHSFRHRFAKNFLEKYNDISFLADLMGHESI 229

Query: 317 DQAETYTKG 325
           +    Y + 
Sbjct: 230 ETTRIYLRK 238


>gi|319760125|ref|YP_004124064.1| integrase family protein [Alicycliphilus denitrificans BC]
 gi|317119731|gb|ADV02219.1| integrase family protein [Alicycliphilus denitrificans BC]
          Length = 323

 Score = 78.9 bits (193), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 39/264 (14%), Positives = 87/264 (32%), Gaps = 24/264 (9%)

Query: 85  GSLAVNSRISFESYFDQIIR-KSGDFDY--RKITTKHIRSGVESRKH---TPSSAIQFLT 138
             LA  SR +       +++ K  +      K+  + +R  + S+     T S+A    +
Sbjct: 38  RGLAARSRQNNLRIVGWLLQQKFAECPVEIAKLRPEDVRRFLASQLDAHRTTSNASHLAS 97

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPK--RKTEGIRPWTKEDMQQ----FKSFWSEGSQP 192
           S+R  F++              +  P   R     R    +++++    F +      + 
Sbjct: 98  SLRSYFRYRTTCGDRVDALTAVISSPVNWRLATIPRALKPDEVERLLNYFTANLRLPKRD 157

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT--VELPDGFMKLLA---- 246
                  L  GLR  +     +  +     ++  + T ++    + LP    + LA    
Sbjct: 158 YAIVRCALDMGLRAGEIAHLMISDIDWRAGTVMLRGTKSLRQDIMPLPMKTGQALADYLQ 217

Query: 247 --MTPIGKETFFINNDKQ---KMNATQFSIWFKAKATKAGVNKS-AHGVRKFSATISADA 300
                      F+   +     + +       K    + G+  S AH +R   A    + 
Sbjct: 218 HERPATRNPAIFVRQKEGRDCPITSMAIQKVIKHACCRVGLPHSSAHALRHTLACRLVEN 277

Query: 301 GATAHELMATYGWKTVDQAETYTK 324
           G++  E+      ++++    Y K
Sbjct: 278 GSSLKEVADLLRHRSLNTTLIYAK 301


>gi|294664393|ref|ZP_06729752.1| site-specific recombinase, phage integrase family [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 10535]
 gi|292605835|gb|EFF49127.1| site-specific recombinase, phage integrase family [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 10535]
          Length = 405

 Score = 78.9 bits (193), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 43/314 (13%), Positives = 93/314 (29%), Gaps = 52/314 (16%)

Query: 59  EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF---DYRKIT 115
           E       +P TL+           +           +   ++I+R  G        +I 
Sbjct: 87  EAQQPASARPQTLRE-----FAEGDYRRWVRRELKRGDEAVNRILRVFGPLLGAPLPQID 141

Query: 116 TKHIRSGVESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI- 171
            + +   + +R+H   + ++  + L +++ +   A+    +  +P   ++  +     I 
Sbjct: 142 RRAVEDIITARRHEGASVATTNRDLAAIKGILTKALEWSLITTHPLERLKASREVGSSIV 201

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLA--------------------------------FEFL 199
           R  + E+  + ++      Q R A                                    
Sbjct: 202 RYLSPEEGARLRAALQAREQERRAHRESGNTWCKERGGDGRPMWPAEGYTDHLMPMVLLA 261

Query: 200 LYSGLRCSDSCRAGVQH--LQNNIFSIKTQ--KTGTIITVELPDGFMKLL---AMTPIGK 252
           L +GLR  +       H  L   + ++     K+G    V L    + +L        G 
Sbjct: 262 LNTGLRRGELFGLTWSHANLTTKVLTVAAGNAKSGRTRHVPLNAEALDVLIRWRRQAGGA 321

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYG 312
              F N   ++ +    + W +  A    V    H +R   A+     G   + +    G
Sbjct: 322 GLVFPNPAGRRFD-NIQTSWERLAAAAELVEFRLHDLRHSFASKLVMRGVDLNTVRELLG 380

Query: 313 WKTVDQAETYTKGA 326
              +     Y   A
Sbjct: 381 HADIKMTLRYAHLA 394


>gi|229549036|ref|ZP_04437761.1| bacteriophage integrase [Enterococcus faecalis ATCC 29200]
 gi|229305829|gb|EEN71825.1| bacteriophage integrase [Enterococcus faecalis ATCC 29200]
 gi|315148862|gb|EFT92878.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX4244]
          Length = 393

 Score = 78.9 bits (193), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 53/324 (16%), Positives = 104/324 (32%), Gaps = 60/324 (18%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132
           WL  EY+K+    +     R   +     I+   G     ++T K ++  V         
Sbjct: 77  WL-DEYKKTVRESTFIATERRMKK----HILPTFGKMRLERLTVKIVQKSVNEWYKKNEM 131

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR-----KTEGIRPWTKEDMQQFKSFWS 187
               L+    +  +AV  E +  NP   + +P       K    + +TK++++ F +   
Sbjct: 132 GKVLLSYASRVCDYAVGLEIIDSNPFKKITKPSSLKKLEKNTKRKFYTKDELEYFLNTAD 191

Query: 188 EGSQPR---------------LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
             +                    F  L ++G+R  ++       +      +   KT  I
Sbjct: 192 SIANQAKEESLVLKYYADLDCAIFRLLSFTGIRVGEALALNWNDIDLKKQVVNINKTTAI 251

Query: 233 IT--VELPDG-----------------------FMKLLAMTPIGK---ETFFINNDKQKM 264
            T  + + D                          +  A+   G    +  F   D    
Sbjct: 252 STNGLTINDPKTPNSIRKISFDNKTAYILKKWKLRQHEALMKKGGFKTQLIFTKIDGTMF 311

Query: 265 NATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADA-GATAHELMATYGWKTVDQA-E 320
            +       K  A KA ++ S   HG R   AT+  ++    +  +    G  ++    +
Sbjct: 312 RSQDIYQRSKRLAEKANLH-SIGCHGFRHTHATLLFESDNVRSKIIQERLGHSSLQITMD 370

Query: 321 TYTKGADRIRLGIKNSRRISSVVD 344
           TYT  +D   +  + +   SS V+
Sbjct: 371 TYTHVSD--EVTKEATDAFSSYVN 392


>gi|255034348|ref|YP_003084969.1| integrase family protein [Dyadobacter fermentans DSM 18053]
 gi|254947104|gb|ACT91804.1| integrase family protein [Dyadobacter fermentans DSM 18053]
          Length = 436

 Score = 78.9 bits (193), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 41/281 (14%), Positives = 87/281 (30%), Gaps = 34/281 (12%)

Query: 75  ISEYRKSAHWGSLAVNSRISFE---SYFDQIIR---KSGDFDYRKIT---TKHIRSGVES 125
           I ++      G  + N+   +     +    I+   K+ D  + +++    +     +  
Sbjct: 131 IEKFELLVQRGMRSDNTLRHWRKLKRHVTAFIKFQYKTSDLKFSELSGLFAEEFYEYLTL 190

Query: 126 RKHTPSS---AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
            K  P +   A + +   R + K  V+++++  NP    +      E I P   E +++ 
Sbjct: 191 HKPKPLAEVSARKDVKWTRQIVKIGVKKDFITRNPMEGFKCSGGDVEVI-PLEFEQVERI 249

Query: 183 KS---FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ------NNIFSIKTQKTGTII 233
                     ++ R AF F  ++G    D        ++            K  KT    
Sbjct: 250 HRKKLHVKRLAEVRDAFIFQCFTGFAYQDIYGLTRDSIRLVGAKRERWLVRKRGKTQVGE 309

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDK-----QKMNATQFSIWFKAKATKAGVNKSA-- 286
            V +     +L+         + I +DK            +            +  S   
Sbjct: 310 MVPILPIVEELIE--KYKDHPYCIAHDKLIPVNSNFRYNTYLKELADICNIRDITGSIRR 367

Query: 287 ---HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              H  R F A +  + G    ++    G K +     Y +
Sbjct: 368 LDTHDARHFFADMMLNNGVPLEDVSKMLGHKNIRTTMRYCR 408


>gi|317124016|ref|YP_004098128.1| integrase [Intrasporangium calvum DSM 43043]
 gi|315588104|gb|ADU47401.1| integrase family protein [Intrasporangium calvum DSM 43043]
          Length = 329

 Score = 78.9 bits (193), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 41/292 (14%), Positives = 88/292 (30%), Gaps = 42/292 (14%)

Query: 85  GSLAVNSRISFESYFDQIIR--------KSGDFDYRKITTKHIRSGVE----SRKHTPSS 132
             L+ N+  ++   +  +I+         +   D   I  + I + ++     R ++ S+
Sbjct: 20  KGLSPNTIAAYRDTWRLLIKYLTASTGVHADKIDLGMIDAEAITTFLDHLEADRGNSAST 79

Query: 133 AIQFLTSMRVLF-----KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
               LT++R +              +A    L+V   +     ++  + E+ Q       
Sbjct: 80  RNARLTAIRAVLAVTLPDHPEHAGTIAR--VLAVPTRRGTPRTVQFLSVEETQALLDAPD 137

Query: 188 E----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTG--------TIIT 234
                G + R      + +GLR S+        +       +     G        T IT
Sbjct: 138 PNTWTGRRDRALLTLAIQTGLRVSELTALTTNDIHTGTGAHVTCTGKGRKYRATPLTSIT 197

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA--------GVNKSA 286
           + +   ++   A  P      F     Q ++            + A        G + + 
Sbjct: 198 LTVLTPYLAERAARPGAAA--FPGPRGQHLSRDALERRLAKHVSTATEHCPSLGGKHVTM 255

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338
           H +R  +A     AG     +    G +     + Y      I+    +  R
Sbjct: 256 HTLRHTAAMRLLQAGVDVAVIALWLGHENTSSTDVYLHADMTIKQAAIDRTR 307


>gi|150006222|ref|YP_001300966.1| integrase [Bacteroides vulgatus ATCC 8482]
 gi|149934646|gb|ABR41344.1| integrase [Bacteroides vulgatus ATCC 8482]
          Length = 407

 Score = 78.9 bits (193), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 41/254 (16%), Positives = 77/254 (30%), Gaps = 26/254 (10%)

Query: 90  NSRISFESYFDQIIRKSG-----DFDYRKITT---KHIRSGVESRKHTPSSAIQFLTSMR 141
           + R S  S  + +    G     D  +  +T    K  +  +  + ++ S+    L  ++
Sbjct: 127 SYRQSKTSQLN-LREFIGLRGMNDITFEDLTEEFGKSYKLFLIGKGYSASNTNHNLCWLQ 185

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS---FWSEGSQPRLAFEF 198
            L   AV +  +  NP   V   K+ +   R  ++ D+                R  F F
Sbjct: 186 RLVYIAVDRGLLKFNPLEDVGYEKKGSPKRRHISRNDLLLIMETPMEDKALELARRMFVF 245

Query: 199 LLYSGLRCSDSCRAGVQHLQ-----NNIFSIKTQKTGTIITVELPDGFMKL--LAMTPIG 251
              +GL   D       H+            K  KT     + L     ++  L  T   
Sbjct: 246 SSLTGLAYVDLRNLYPHHIGMTADGRKYIREKRAKTNNEAFIPLHPIAEQIMSLYNTADD 305

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMA 309
            +  F  +     +       F +     G+N   +AH  R         +G +   +  
Sbjct: 306 SKPVFPLS-----SRDSMWFEFHSLGVALGINENLTAHVARHTFGVNMVTSGISMESIAK 360

Query: 310 TYGWKTVDQAETYT 323
             G   +   + Y 
Sbjct: 361 MMGHSNLRSTQVYA 374


>gi|188492442|ref|ZP_02999712.1| prophage integrase [Escherichia coli 53638]
 gi|188487641|gb|EDU62744.1| prophage integrase [Escherichia coli 53638]
          Length = 413

 Score = 78.9 bits (193), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 51/333 (15%), Positives = 109/333 (32%), Gaps = 33/333 (9%)

Query: 24  YFRKGHGRRIRLPYP--------HESTFIPAYMSALTGST-----PKREYINSPRKKPTT 70
           Y+R    +R  +                   Y S +   T      +R+     RKK  T
Sbjct: 47  YYRPTDKKRTIISLGSLNDVSLSDARERRNEYRSLIAKGTDPQDHERRKREAESRKKGNT 106

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHT 129
            + + S++ +     +LA N+        +  +    G+     +T +     +   K  
Sbjct: 107 FEKVASDWYEMKKGQNLAYNTIKDIWRSLEKYVFPYIGNTPIDTLTARRFVEILTPIKAR 166

Query: 130 PS--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVER--PKRKTEGIRPWTKEDMQQFKSF 185
            +  +  + L  +  +  +A     + IN   +V +  P    + +     E + Q    
Sbjct: 167 GNLETLKRVLQRINEVMDFAANSGLIDINTAANVRKAFPSPTKKHMPTIRPEQLPQLMHD 226

Query: 186 WSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIITVEL- 237
            S  S   Q RL  E+ L +  R +++  A  + +  +  +        K      + L 
Sbjct: 227 LSVASIERQTRLLIEWQLLTVARPTEAAAARWEEIDLDAETWTIPAGRMKMRRDHVIPLC 286

Query: 238 --PDGFMKLLAMTPIGKETFFINNDKQ--KMNATQFSIWFKAKATKAGVNKSAHGVRKFS 293
                 ++ +      +E  F +       M++   +   +     AGV  S HG+R   
Sbjct: 287 GQAMAVLETMKPISAHREHVFPSLKNPMLPMSSQTANAALRRMGY-AGVLVS-HGLRAIF 344

Query: 294 ATISADAGATAHELMATYGWKTVDQAET-YTKG 325
           +T + + G     + A       ++    Y + 
Sbjct: 345 STAANEEGFEPDVIEAALAHVDTNEVRRAYNRS 377


>gi|319935324|ref|ZP_08009762.1| hypothetical protein HMPREF9488_00593 [Coprobacillus sp. 29_1]
 gi|319809732|gb|EFW06133.1| hypothetical protein HMPREF9488_00593 [Coprobacillus sp. 29_1]
          Length = 432

 Score = 78.9 bits (193), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 43/292 (14%), Positives = 94/292 (32%), Gaps = 61/292 (20%)

Query: 90  NSRISFES-----YFDQIIRKSGDF---------DYRKITTKHIRS-GVESRKHTPSSAI 134
            ++ ++E      Y  QI      +         D      +   S   E++K + ++ +
Sbjct: 123 ATQNNYERSTYGTYLMQINSNIAPYFREQEITLSDLTSFDIQDFYSYAFETKKVSANTVL 182

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
           ++  ++    ++AV+ + +  NP  +V +PK+       ++++++ +       G    L
Sbjct: 183 KWHANIHKALEYAVQNKLITENPSKNVSKPKKIQFTGSAYSQDELDRLFQAAK-GDPLEL 241

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV------------------- 235
                 + GLR  +        +    F  KT K GT +TV                   
Sbjct: 242 GIYLAAFYGLRREEVVGIKWDAID---FEAKTIKVGTTVTVTNINGKLEEVEKDRAKNKS 298

Query: 236 -----ELPDGFMKLLAMTPIGK----------------ETFFINNDKQKMNATQFSIWFK 274
                 LP+ F +LL      +                +  +++    ++     +  F 
Sbjct: 299 SYRVYPLPNLFEELLIKLKNDQTKNKQLAGRSYNYKYEDYIYVDKLGNRIKPGYITQHFA 358

Query: 275 AKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTK 324
               K  +     H +R   AT     G    ++    G  ++     TY  
Sbjct: 359 LVLKKNNLRHIRFHDLRHTCATRMCIKGENLVKVQKWLGHSSITTTANTYAH 410


>gi|254701428|ref|ZP_05163256.1| Phage integrase [Brucella suis bv. 5 str. 513]
 gi|261751967|ref|ZP_05995676.1| phage integrase [Brucella suis bv. 5 str. 513]
 gi|261741720|gb|EEY29646.1| phage integrase [Brucella suis bv. 5 str. 513]
          Length = 308

 Score = 78.9 bits (193), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 79/239 (33%), Gaps = 12/239 (5%)

Query: 93  ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEY 152
            SF    D+I++ +    + +     I   +  R ++ ++  + + ++  L + A +   
Sbjct: 63  RSFLGEIDEILKGARFSGFDQEMLDSIIGTLRERGNSNATINRKMAALSKLLRKAHKMGD 122

Query: 153 VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY-SGLRCSDSCR 211
           +  N    + R K +   IR   +E+ ++  +      +        L  +G    ++  
Sbjct: 123 I-FNLPEFI-RQKERVGRIRFLEQEEEKRLFAAIKSRCEDSYRLSVFLVDTGCHLGEAIG 180

Query: 212 AGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI 271
                +Q    +    K+    TV L     K   + P  +    +      +N  +F  
Sbjct: 181 LTWNDIQEQRVTFWVTKSNRSRTVPLTRRARKASHI-PRER----LKGPFSMLNQVRFRQ 235

Query: 272 WFKAKATKAGVNKS----AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            +     + G+        H +R   A+     G     +    G +T+     Y   A
Sbjct: 236 IWNEAKAEVGLGADDQIVPHILRHTCASRLVRGGIDIRRVQMWLGHQTLQMTMRYAHLA 294


>gi|224026101|ref|ZP_03644467.1| hypothetical protein BACCOPRO_02854 [Bacteroides coprophilus DSM
           18228]
 gi|224019337|gb|EEF77335.1| hypothetical protein BACCOPRO_02854 [Bacteroides coprophilus DSM
           18228]
          Length = 405

 Score = 78.9 bits (193), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 67/193 (34%), Gaps = 18/193 (9%)

Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ---FKSFWSEGSQPRLAFEFLLYSG 203
           AV   Y++ NP  + +  +R+   +    +E++++   F +      + +  F F  ++G
Sbjct: 201 AVANSYISYNPVNAYK-VEREPVEVDFLDEEELRKIINFDTPLPRLERAKDMFLFGCFTG 259

Query: 204 LRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFIN 258
           L   D      +H + +         +  KTG +  + L      +L     G E     
Sbjct: 260 LSYIDIKTLTPEHFEKDNTGRIWIKKRRVKTGVLSRIPLLPIAKLILDKYK-GGEKLLPI 318

Query: 259 NDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSA-TISADAGATAHELMATYGWKT 315
            D         + + K  A   G+NK    H  R   A TI+     +   +    G   
Sbjct: 319 QD-----PADINKYLKDIAILCGINKRICFHTSRHTFASTITLANNISLEVISKMLGHTN 373

Query: 316 VDQAETYTKGADR 328
                 Y K  D+
Sbjct: 374 TRMTAHYAKLIDK 386


>gi|188534989|ref|YP_001908786.1| Type 1 fimbriae regulatory protein, FimB [Erwinia tasmaniensis
           Et1/99]
 gi|188030031|emb|CAO97916.1| Type 1 fimbriae regulatory protein, FimB [Erwinia tasmaniensis
           Et1/99]
          Length = 186

 Score = 78.9 bits (193), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 31/165 (18%), Positives = 57/165 (34%), Gaps = 15/165 (9%)

Query: 174 WTKEDMQQFKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQK 228
            T +++Q+      EG+   +     +     G R S+ C   +  +  ++ I  +   K
Sbjct: 7   LTHDEIQRLLQASREGTYPVRDECMIKMCFIHGFRVSELCHLRISDISLEDGIIHVNRLK 66

Query: 229 TGTIITVELPDGFMKLLAMTP------IGKET--FFINNDKQKMNATQFSIWFKAKATKA 280
            G   T  L    + LL           G +T   F++     M+  Q     ++    A
Sbjct: 67  GGLKTTHPLLKSELLLLKKWLKERLLWRGSDTSWIFLSQKGGAMSRQQIYKLIRSYGAAA 126

Query: 281 GV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
            +  + S H +R       AD GA    +    G + +     YT
Sbjct: 127 HIPVDLSPHMLRHACGFALADRGADTRLIQDYLGHRNIQHTVLYT 171


>gi|188495542|ref|ZP_03002812.1| Int [Escherichia coli 53638]
 gi|188490741|gb|EDU65844.1| Int [Escherichia coli 53638]
          Length = 327

 Score = 78.9 bits (193), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 45/307 (14%), Positives = 99/307 (32%), Gaps = 23/307 (7%)

Query: 26  RKGHGRRIRLPYPHESTFI--PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAH 83
           R   G+RIR  +  ++  +    Y  A       ++     R    TL  L+  + K  H
Sbjct: 18  RGRDGKRIRRKFERKAEAVAFERYTIA----NASQKEWAGQRADRRTLTELLDIWWK-YH 72

Query: 84  WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK---HIRSGVESRKHTPSSAIQFLTSM 140
             +    ++    ++  + I   GD    ++  +     RS       + ++  + +  +
Sbjct: 73  GQNHEHGTKEF--NHLLKTISGIGDIPVSRMNKRALMDYRSMRLRDGISAATINRDIYRL 130

Query: 141 RVLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199
             +F   ++  E+   +P   +         +    K ++++  +  +      L     
Sbjct: 131 SGMFTKLIQLDEFSGQHPIHGLPPLTEANPEMTFLEKAEIEKLLNVLA--GDDLLVALLC 188

Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN 259
           L +G R ++        + N   +    K G   TV +     K +      K       
Sbjct: 189 LSTGGRWTEVATLKPAQITNCRVTFLKTKNGKKRTVPISKELEKKVKEEASAKLF----- 243

Query: 260 DKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
              K++  +F    +        N++ H +R   A+     G     L    G  ++ Q 
Sbjct: 244 ---KVDYEKFCGILRRVKPDIPPNQATHILRHTFASHFMMNGGNIIALQQILGHASIQQT 300

Query: 320 ETYTKGA 326
             Y   A
Sbjct: 301 MAYAHLA 307


>gi|170767419|ref|ZP_02901872.1| prophage integrase [Escherichia albertii TW07627]
 gi|170123753|gb|EDS92684.1| prophage integrase [Escherichia albertii TW07627]
          Length = 414

 Score = 78.9 bits (193), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 51/333 (15%), Positives = 113/333 (33%), Gaps = 33/333 (9%)

Query: 24  YFRKGHGRR--IRLPYPHESTFIPA------YMSALTGSTPKREYINSPRKKPT-----T 70
           Y+R  + +R  I L    E +   A      Y + +   T  +EY    R+        T
Sbjct: 47  YYRPSNKKRTIISLGSLDEVSLADARKRRSEYRTLIAAGTDPQEYERQKREAEARRQGNT 106

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHT 129
            + + + + +     +LA N+        +  +    G+     +T +     +   K  
Sbjct: 107 FENVAASWYEMKKNQNLAHNTIKDIWRSLEKYVFPYIGNTPIDTLTARRFVEILTPIKAR 166

Query: 130 PS--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVER--PKRKTEGIRPWTKEDMQQFKSF 185
            +  +  + L  +  +  +A     + IN   +V +  P    + +     E + Q  + 
Sbjct: 167 GNLETLKRVLQRINEVMDYAANSGIIDINTAANVRKAFPTPTKKHMPTIRPEQLPQLMND 226

Query: 186 WSEGSQPR---LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIITVEL- 237
            +  S  R   L  E+ L +  R +++  A  + +     +        K      + L 
Sbjct: 227 LTIASIERQTKLLIEWQLLTATRPAEASAARWEEINLEAATWTIPAGRMKMRRDHVIPLC 286

Query: 238 --PDGFMKLLAMTPIGKETFF--INNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFS 293
                 ++ +      +E  F  + N  + M++   +   +     AGV  S HG+R   
Sbjct: 287 AQAMAVLEAMKPISARREHVFPSLKNPVKPMSSQTANAALRRMGY-AGVLVS-HGLRAIF 344

Query: 294 ATISADAGATAHELMATYGWKTVDQAET-YTKG 325
           +T + + G     + A       ++    Y + 
Sbjct: 345 STAANEEGFEPDVIEAALAHVDTNEVRRAYNRS 377


>gi|332141767|ref|YP_004427505.1| site-specific recombinase, resolvase family protein [Alteromonas
           macleodii str. 'Deep ecotype']
 gi|327551789|gb|AEA98507.1| site-specific recombinase, resolvase family protein [Alteromonas
           macleodii str. 'Deep ecotype']
          Length = 298

 Score = 78.9 bits (193), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 64/200 (32%), Gaps = 13/200 (6%)

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVA-INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
           S+A   L  +  + K+ ++   +    P    + P       R  T    +         
Sbjct: 95  STARLDLQMLSRIVKFGIKHFELDWPFPFNDFKYPPECQPRDRVVT--QKELKLLLEDLP 152

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLL-- 245
                A E    + +R  +  +   QH++   N   +   K G    V L     ++L  
Sbjct: 153 PLVASAAELSYETAMRRGEIVKIQKQHIEFHQNRLYVPEAKNGYSRYVPLNAKATQILKD 212

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATA 304
            +          N       A   S  F+    +  +   S H +R  + T  A  G + 
Sbjct: 213 RLVSCNNHQILYNV-----TAESLSKAFRRACKRLEITGLSFHSMRHSAITKYAQRGLSV 267

Query: 305 HELMATYGWKTVDQAETYTK 324
           ++L    G ++ +  E YT 
Sbjct: 268 NQLKVISGHRSTEMLERYTH 287


>gi|196229344|ref|ZP_03128209.1| integrase family protein [Chthoniobacter flavus Ellin428]
 gi|196226576|gb|EDY21081.1| integrase family protein [Chthoniobacter flavus Ellin428]
          Length = 434

 Score = 78.9 bits (193), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 42/274 (15%), Positives = 90/274 (32%), Gaps = 21/274 (7%)

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128
            T+  ++ E+  +     L+                         + T+ I   +     
Sbjct: 140 RTVSQVVEEFIATKTADGLSQVYLDDCGWRLRVFATDF-QTPISHVCTRDIEEWLRKLSI 198

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAIN---PCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
             ++   F   +  LF +A R+ Y+  +       +E+PK K++ I+ +T +++++  + 
Sbjct: 199 GLATRNNFRRLIITLFNFARRRGYLPRDRETEARWLEKPKIKSKPIQIFTPQELRELLTV 258

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSI--KTQKTGTIITVELPDGF 241
            SEG QP+LA     ++G+R ++  R   ++   +  +  I     KT +   V + +  
Sbjct: 259 -SEG-QPKLAILIGAFTGIRSAEMLRLNWENFNWEEGVIDIGCDQTKTASRRLVPILEPL 316

Query: 242 MKLLAMTPIGKETFFINNDKQKMN-ATQFSIWFKAK---ATKAGVNKSA-----HGVRKF 292
              +             N    +  A  F    K       +            +G+R  
Sbjct: 317 SAWIRPFVKRHGPVL--NYSLPVCLAEAFGTAAKKADAVRREQDPEAPPFKWKQNGLRHS 374

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            A+          +L    G         Y K  
Sbjct: 375 YASYRLAVMEDVSKLSLELGNSPQKVFSNYRKVV 408


>gi|313139933|ref|ZP_07802126.1| phage integrase [Bifidobacterium bifidum NCIMB 41171]
 gi|313132443|gb|EFR50060.1| phage integrase [Bifidobacterium bifidum NCIMB 41171]
          Length = 425

 Score = 78.9 bits (193), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 44/321 (13%), Positives = 89/321 (27%), Gaps = 50/321 (15%)

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSG--- 122
           KP T+      +        L   +  ++ S  ++ +    G     ++   H R     
Sbjct: 102 KPPTVAEWCDHWLNDICKPHLKPRTWGTYASVIERNVKPAIGAVRLDELKPAHFRRMERY 161

Query: 123 -VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
            +E +  +  +A     ++    + AV +  +  NP +    P+   +     T E    
Sbjct: 162 VMEEQGKSSGTAGSAWRTLHKALEDAVLEGVIERNPAVKGTAPRVALKERAALTPEQAAD 221

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----------------------- 218
             +  ++ +  RL +     +G+R  +        L+                       
Sbjct: 222 LIAAETDDTW-RLMWMLAFMTGMRQGERLGLTEDELRRDGDRLIILVEWQAQHLTKREVE 280

Query: 219 ------------NNIFSIKTQKTGTIITVELPDGFMKLLAM-----TPIGKETFFINNDK 261
                       N ++  + +       + LP+     L          G    F ++  
Sbjct: 281 GLPKGVECTPLGNGMYRTRPKTEKGRRAIPLPEALADQLLAHIERHGVNGDGLVFHDDRG 340

Query: 262 QKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
             +        +     + G+      H  R  +ATI    G       A  G   V   
Sbjct: 341 LPLTGCVERRRWYRALDRVGLGHEYVPHSARHTTATILNRLGLDDVTRTAIMGHSRVSTT 400

Query: 320 -ETYTK-GADRIRLGIKNSRR 338
            E YT    DR+        R
Sbjct: 401 NEIYTHVELDRLVAATDGVER 421


>gi|331002078|ref|ZP_08325597.1| hypothetical protein HMPREF0491_00459 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330411172|gb|EGG90588.1| hypothetical protein HMPREF0491_00459 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 309

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 43/279 (15%), Positives = 87/279 (31%), Gaps = 33/279 (11%)

Query: 73  WLISEYRKS----AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK- 127
            L+ ++ K        G++   +   +      + +   +     IT    +  +     
Sbjct: 9   DLLKDFYKEWIAIYKEGAIRDVTLSKYRMSLIWVEKLVPNLRLCDITRVEYQQIINDYAK 68

Query: 128 -HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV--ERPKRKTEGIRPWTKEDMQQFKS 184
            H   + + F   ++     AV +  V  +P   V  +      + I+   + ++     
Sbjct: 69  EHERQTTMDFHHQLKGAILDAVDEGLVPKDPTRKVIIKGRIPSKKKIKYLNQFELHSLLK 128

Query: 185 FWSEGSQPR-LAFEFLLY-SGLRCSDSCRAGVQHLQ----------------NNIFSIKT 226
             + G +     F  LL  +G+R S+                             FS   
Sbjct: 129 SLTLGDEVSWDWFILLLAKTGMRFSEGLAITPNDFDFAHQTVSVNKTWNYKEGGGFSPTK 188

Query: 227 QKTGTI---ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
            K+      I  ++   F  L+   P  K  F    D +  N+T   I  +    K  + 
Sbjct: 189 NKSSVRKVQIDWQVVMQFATLVKDLPSDKPIFV--KDGKVYNSTVNDILVR-YCKKLNIP 245

Query: 284 K-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
             S HG+R   A+I   AG +   +    G  ++   + 
Sbjct: 246 IISVHGLRHTHASILLYAGVSIASVARRLGHASMTTTQK 284


>gi|167571299|ref|ZP_02364173.1| Integrase [Burkholderia oklahomensis C6786]
          Length = 550

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/244 (12%), Positives = 75/244 (30%), Gaps = 24/244 (9%)

Query: 99  FDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158
            +    +        +      +  + R            +     +W++      +   
Sbjct: 223 IETWRIRVAKNPMDGVRRPRYYNERDRRLKGDEETRLLAAAREEDRRWSIEARLQELMSD 282

Query: 159 LSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA-----FEFLLYSGLRCSDSCRAG 213
           + +E  +  T   R  T ++ ++  +  +E S   +        F L +G R S++    
Sbjct: 283 VRIEAERAHTTYRRKLTIKEARKLHASEAEQSFKHVPQLETFINFQLMTGARRSETLTLT 342

Query: 214 VQHLQNNIFS--IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI 271
             ++  +  +  +   K G    + L    +++L   P   +  F       +       
Sbjct: 343 WANVDLDAQTAFLPETKNGRPRKLPLRLDLVEMLRNLPRNGKLVF------PIGVDGLRK 396

Query: 272 WFKAKATKAGVNK-----SAHGVRKFSATISADAGATAH------ELMATYGWKTVDQAE 320
            +     KAG++        H +R  + +  A+AG+         +L A  G +      
Sbjct: 397 AWSRICKKAGLDGKEDGLRIHDLRHEAISRVAEAGSNTPGGFSLVDLQAFSGHRDTRMLL 456

Query: 321 TYTK 324
            Y  
Sbjct: 457 RYAH 460


>gi|238563366|ref|ZP_00438961.2| site-specific recombinase, phage integrase family [Burkholderia
           mallei GB8 horse 4]
 gi|238520806|gb|EEP84263.1| site-specific recombinase, phage integrase family [Burkholderia
           mallei GB8 horse 4]
          Length = 385

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/208 (17%), Positives = 69/208 (33%), Gaps = 23/208 (11%)

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
            +  + +  +  +   AV  E++   P L  +R K   + +R  T    ++  +      
Sbjct: 152 GTVRRVIGVLMAVLHAAVEWEWLDRAPVL--KRRKTTPKRVRWITPAQAERLLAELPAHL 209

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGFMKLLA 246
                F   L +GLR S+        +              K    ITV L D  + +L 
Sbjct: 210 SDMARF--SLETGLRRSNVTGLEWSQVDLARRVAWIHPDQAKARKAITVPLSDTAVDVLR 267

Query: 247 MTPIGK------ETFFI---NNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATI 296
                +      E  F+   +   Q   A      ++    +AG+ +   H +R   A+ 
Sbjct: 268 RQLSKRRAAEHIERVFVYRGSAIGQPNTAA-----WRKALKRAGIRDFRWHDLRHTWASW 322

Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324
               G     L    GW+T++  + Y  
Sbjct: 323 HVQRGTPLQVLKELGGWETLEMVQRYAH 350


>gi|224025612|ref|ZP_03643978.1| hypothetical protein BACCOPRO_02352 [Bacteroides coprophilus DSM
           18228]
 gi|224018848|gb|EEF76846.1| hypothetical protein BACCOPRO_02352 [Bacteroides coprophilus DSM
           18228]
          Length = 219

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 32/204 (15%), Positives = 77/204 (37%), Gaps = 17/204 (8%)

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ-- 191
           +++L +++ + K A+ ++++  +P   +   K+        ++ ++++  +   +  +  
Sbjct: 1   MKYLKNLKKIIKTALIKKWITDDPFAEI-HFKQTKCNREFLSENELRKIINKDFDIQRLQ 59

Query: 192 -PRLAFEFLLYSGLRCSDSCRAGVQHL---QNNIFSIK--TQKTGTIITVELPDGFMKLL 245
             R  F F  ++GL  +D      +HL    N  + I+   +KT  +  + L D    +L
Sbjct: 60  TVRDIFIFCCFTGLAFTDVKNLKKEHLVQADNGEWWIRKVREKTDNMCDIPLLDIPRLIL 119

Query: 246 AMTPIGKETFFINNDK---QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADA 300
                       N         +  + + + K  A   G+  N S H  R   A+++   
Sbjct: 120 EKYQSN---PICNEKGLLLPVPSNQRMNSYLKEIADVCGIQKNLSTHIARHTFASLAIAN 176

Query: 301 GATAHELMATYGWKTVDQAETYTK 324
             +   +    G   +     Y K
Sbjct: 177 KVSLESIAKMLGHTDIRTTRIYAK 200


>gi|184154707|ref|YP_001843047.1| integrase [Lactobacillus fermentum IFO 3956]
 gi|183226051|dbj|BAG26567.1| integrase [Lactobacillus fermentum IFO 3956]
          Length = 367

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/310 (10%), Positives = 94/310 (30%), Gaps = 30/310 (9%)

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
           P     TL      + +      +   ++  ++   + + +       + +     ++ +
Sbjct: 58  PDLTEITLADYYQRWYQLYKEQGITRITQNRYKVIGNVLTKYFNKKKLKDVRKSDYQAFI 117

Query: 124 ESRK--HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP--WTKED- 178
                 H   S  +   +++ +  +A+  E +  +   +++    K    +     +++ 
Sbjct: 118 NWYGANHARDSVNKLNGAVKKMVSFALDDEIIRKDFTSNIQVISNKDRERKVEYLNQKET 177

Query: 179 ---MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ------------NNIF- 222
              M   K+        +      L +G+R S+        L             + I  
Sbjct: 178 AVLMDAVKADLDPDHPVKYMILTALLTGMRKSEIQALTWNDLDFLHSTININKSWDEIEK 237

Query: 223 SIKTQKT-GTIITVELPDGFMKLLAMTPIGKET--FFINNDKQKMNATQFSIWFKAKATK 279
           + K  KT  +   + +    +K+LA       T  F+     Q       +   +    +
Sbjct: 238 AFKPTKTLSSRRVIPVNRELLKMLASLKANNSTMVFYSPEYDQVPTGNALNKALRFIMHQ 297

Query: 280 AGVNKS---AHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGAD--RIRLGI 333
             + K     H +R          G   + +    G   +    +TY+   D  + +   
Sbjct: 298 QAIAKQGFHFHSLRHVHVAYLLGQGVDVYAISKRLGHSDITITLKTYSYLIDEYKAKNDD 357

Query: 334 KNSRRISSVV 343
              +++  ++
Sbjct: 358 LIVKKLQELI 367


>gi|315576287|gb|EFU88478.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0309B]
 gi|315582779|gb|EFU94970.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0309A]
          Length = 372

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 50/354 (14%), Positives = 110/354 (31%), Gaps = 50/354 (14%)

Query: 14  ERTRHGKIIYYFRKGH----GRRIRLPYPHESTFIPAYMSALTGSTPKREYIN--SPRKK 67
            + +     Y+         G+RI         F   + +A        +++     +++
Sbjct: 8   YKDKKTGKYYFVASLGFDLKGKRI-------QKFKRGFRTAKEAKKAYNQFMIDYQEKRE 60

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127
             T      EY K  +   +   +  +     +  +    +     I T  ++  +    
Sbjct: 61  KITFGNFYEEYYKCWYKNHVKEGTFKTNTGIIENHLSIFNEVQINAIETVDLQKLINYLS 120

Query: 128 H----------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
                      +P      + +++ +F+ A    ++  +    V R + + + +  WT +
Sbjct: 121 GEYKTKTGESLSPEYINLIICNIQSVFERAFIFGFIDEDISKKVSRVRVEEKEVNIWTID 180

Query: 178 DMQQFKSFWSEGSQ----PRLAFEFLLYSGLRCSDSCRAGVQHLQNN------------- 220
           DMQ+      E        ++ F FL  +GLR  ++     + +  +             
Sbjct: 181 DMQKVMLLSDESDSLLFFKKMFFRFLFMTGLRLGEALALNWEDVDFDSKVVYINKTMLVK 240

Query: 221 ---IFSIKTQKTGTII-TVELPDGFMKLLAMTPIGKET----FFINNDKQKMNATQFSIW 272
               F   T KT + I TV L D  ++L  +    +         + D   +  +    W
Sbjct: 241 NKREFRTTTPKTKSSIRTVSLDDETLRLFEIWREQQSPLKINLIFSIDGGTLAKSTTHGW 300

Query: 273 FKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
            K     A V     H +R   A++       +  +    G   +    E Y  
Sbjct: 301 LKKLCDLADVPVIKIHALRHSHASMLIALKEDSLVIKERLGHSRITTTLEKYGH 354


>gi|284048509|ref|YP_003398848.1| integrase family protein [Acidaminococcus fermentans DSM 20731]
 gi|283952730|gb|ADB47533.1| integrase family protein [Acidaminococcus fermentans DSM 20731]
          Length = 309

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/279 (12%), Positives = 86/279 (30%), Gaps = 33/279 (11%)

Query: 73  WLISEYRKS----AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK- 127
            L  EY          G++   +   ++     + R   +   + +T    +  +     
Sbjct: 9   QLFREYYAHWVTMYKEGAVRPVTLAKYQMTQSWLERLLPELRVQDLTRLAYQQLINDYAQ 68

Query: 128 -HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV--ERPKRKTEGIRPWTKEDMQQFKS 184
            H   + + F   ++     AV +  +  +P   V  +    + + I+   +  +     
Sbjct: 69  YHERQTTMDFHHQLKGAILDAVDEGLIQRDPTRKVIIKGMAPREKKIKYLNQFQLHTLLK 128

Query: 185 FWSEGSQPR-LAFEFLLY-SGLRCSDSCRAGVQHLQ---------------NNIFSIKTQ 227
               G +     F  L+  +G+R S++                         N   + T+
Sbjct: 129 HLDLGERVNWDWFILLVAKTGMRFSEALALTPDDFDFAHQTVCINKTWNYKGNGGFLPTK 188

Query: 228 KTGTIITVELP----DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
              +I  +++       F  L    P     F     K K+  +  +   +    +  + 
Sbjct: 189 NRSSIRKIQIDWKTVMQFAVLTDSLPKEVPFFI---HKGKLYNSTVNNILERHCKRLEIP 245

Query: 284 K-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
             S HG+R   A++   AG +   +    G  ++   + 
Sbjct: 246 IISIHGLRHTHASLLLFAGVSIASVARRLGHASMTTTQK 284


>gi|261883696|ref|ZP_06007735.1| phage integrase family site specific recombinase [Campylobacter
           fetus subsp. venerealis str. Azul-94]
          Length = 171

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 23/163 (14%), Positives = 67/163 (41%), Gaps = 12/163 (7%)

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITV------ELPDGFM 242
           + +L+ + ++++G+R S++     + +    +++ ++ +  G    +       + +   
Sbjct: 8   RNKLSIKPIVFTGIRVSEALNLKRKDISEDGDLYILRIRGKGNKYRIVMIKKHLIDEHLQ 67

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATISAD 299
            +       +   F+N + +K+     S   +     AG+ K    AH +R   AT+   
Sbjct: 68  NIAINYINSEGYLFVNRNGEKLTQAYVSRIVEQILFGAGIRKEKNGAHMLRHTFATMLYK 127

Query: 300 AGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSRRISS 341
                  +    G  +++ +  YT   +D+++L  K +  ++ 
Sbjct: 128 KQKDLVLVQEALGHASLNTSRIYTHFDSDKLKLAAKVAEDLND 170


>gi|284992378|ref|YP_003410932.1| integrase family protein [Geodermatophilus obscurus DSM 43160]
 gi|284065623|gb|ADB76561.1| integrase family protein [Geodermatophilus obscurus DSM 43160]
          Length = 311

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/272 (12%), Positives = 72/272 (26%), Gaps = 27/272 (9%)

Query: 85  GSLAVNSRISFES----YFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSM 140
             L+ ++   +        D ++R+ G      +    +RS +   +   +         
Sbjct: 31  RDLSEHTVRGYVGDAVWLLDHLVRRGG-TRVDDLDLATLRSWLAQGRTRGAGRATTARRA 89

Query: 141 RV---LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ-----QFKSFWSEGSQP 192
                   W  R    A +  L +  PK +         +  +        +    G + 
Sbjct: 90  AAARSFTGWLRRAGLTAEDVGLRLVSPKAQRTLPDVLAPDQARVVVESAAGAEEPVGLRD 149

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIG 251
            +  E L  SG+R S+     V  +      ++   K     +V       + L      
Sbjct: 150 AVVLELLYASGIRVSELVGLDVDDVDRGRRLLRVLGKGRKERSVPYGVPAERALDAWLTR 209

Query: 252 KETFFINNDKQKMNATQFSIWFKAKAT------------KAGVNKSAHGVRKFSATISAD 299
                                                      +   HG+R  +AT   +
Sbjct: 210 GRPALATERSGPALLLGLRGGRLDAREVRRTVHAAVAAAPGAPDIGPHGLRHSAATHVLE 269

Query: 300 AGATAHELMATYGWKTVDQAETYTK-GADRIR 330
            GA    +    G  ++   + YT    +R+R
Sbjct: 270 GGADLRSVQELLGHASLATTQIYTHVTVERLR 301


>gi|158340194|ref|YP_001521364.1| phage integrase [Acaryochloris marina MBIC11017]
 gi|158310435|gb|ABW32050.1| phage integrase [Acaryochloris marina MBIC11017]
          Length = 298

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 46/264 (17%), Positives = 86/264 (32%), Gaps = 27/264 (10%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSSAIQFLTSMRVL 143
             LA ++  S+E     ++++ G +    +  + +   + S  H +  +  +    ++ L
Sbjct: 16  PGLAASTVRSYEFTLLPLLQQYGQWSLELLDRQTLEEYLNSLSHLSFKTHHRHQAILQAL 75

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEG--------IRPWTKEDMQQFKSFWSEGSQPRLA 195
             +AV Q Y+  NP   ++R K             IR  T + +Q      S+ ++    
Sbjct: 76  LNFAVEQGYLRSNPMTRMKRRKPDPAKGEHDSDQIIRYLTPDQLQLQYQLVSKDARTAAL 135

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-----ELPDGFMKLLAMTPI 250
              L  +G R S+     ++ L       +    G          +  +   K LA    
Sbjct: 136 VRLLHRTGARISELLSLDLEALDLEQRKFQVIGKGNRQRWCFYSEDAAEVLQKYLAEYRH 195

Query: 251 GKETFFINNDK-------QKMNATQFSIW---FKAKATKAGVNKSAHGVRKFSATISADA 300
                     +       +    +    W    K   T AG     H +R   AT     
Sbjct: 196 PGSPALFTAQQYLSDQVNRLSYRSAHHNWKQLIKGHPTLAGT--RLHDLRHTFATERVGI 253

Query: 301 GATAHELMATYGWKTVDQAETYTK 324
            A   EL A  G +++     Y K
Sbjct: 254 IA-LEELRALMGHQSIQTTLRYQK 276


>gi|260885894|ref|ZP_05736094.2| integrase [Prevotella tannerae ATCC 51259]
 gi|260851415|gb|EEX71284.1| integrase [Prevotella tannerae ATCC 51259]
          Length = 471

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 53/293 (18%), Positives = 111/293 (37%), Gaps = 31/293 (10%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQ------IIRKSGDFDYRKITTK---HIRSGVESR 126
            +Y K    G  A  +   +   +        I     D   +++T          + + 
Sbjct: 178 EDYEKQVEAGMKAKGTLEKYRIVYKHLQEFLDIRYHVKDIALKELTPAFISDFEMFLRTD 237

Query: 127 KHTPSSAIQFLTS-MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           KH  ++ +      +R +   A+  E++  +P    E  K +T      TKE+++     
Sbjct: 238 KHCCTNTVWLYVCPLRTMVFIAINNEWLTRDPFREYEIKKEETT-RSFLTKEEIRLLMDG 296

Query: 186 WSEGSQPRLAFEFLLY---SGLRCSDSCRAGVQHLQN-----NIFSIKTQKTGTIITVEL 237
             + ++  L  +  L+   +GL  SD      ++++         +I  QKTG +  + L
Sbjct: 297 KLKNAKQELYRDLYLFCAFTGLSFSDMRNLTEENIRTYFDEHEWININRQKTGVVSNIRL 356

Query: 238 PDGFMKLLAMTPIGKETFFINNDK--QKMNATQFSIWFKAKATKAGVNK--SAHGVRKFS 293
            D     +A   IGK      N K     +        +A A + G+ K  + H  R  +
Sbjct: 357 LD-----IANRIIGKYRGLCENGKIFPVPHYNTCLAGIRAVAKRCGITKHITWHQSRHTA 411

Query: 294 AT-ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345
           AT +    G     + +  G K++   + Y K   + +L  ++ + +++ ++S
Sbjct: 412 ATTVFLSNGVPIETVSSMLGHKSIKTTQIYAK-ITKEKLN-QDMKNLAARLNS 462


>gi|228975030|ref|ZP_04135589.1| YdcL (Lambda integrase-like, N-terminal,DNA breaking-rejoining
           enzyme, catalytic core) [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228784551|gb|EEM32571.1| YdcL (Lambda integrase-like, N-terminal,DNA breaking-rejoining
           enzyme, catalytic core) [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|326942751|gb|AEA18647.1| DNA integration/recombination/inversion protein [Bacillus
           thuringiensis serovar chinensis CT-43]
          Length = 353

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 47/282 (16%), Positives = 93/282 (32%), Gaps = 30/282 (10%)

Query: 70  TLKWLISEYRK--SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR- 126
           T + +   Y    +      ++N+     + ++ ++++ G      IT +H+        
Sbjct: 57  TFEHVADSYFNWYTQRRKQSSINTIK--NAIYNHLMKEFGKMKIDCITPRHVMDYQNKMI 114

Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP-KRKTEGIRPWTKEDMQQFKS 184
            +++     +F T++  +F + ++   +  NP        K   + I  W  E+ +QF S
Sbjct: 115 NEYSAEYLKKFHTTLSAIFNFGIKFHGLTTNPARIAGNFQKESKKRINFWEFEEFKQFIS 174

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG------------TI 232
              E    +  F  L YSG R  +      + +     +I   KT             + 
Sbjct: 175 VVDEPMY-KAFFSTLYYSGARKGELLALTWEDINFEEKTINIHKTKYNRQVTEPKTKASN 233

Query: 233 ITVELPDGFMKLLA--------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284
             + LP+  M LL           P+  +          +  T     F      A V +
Sbjct: 234 RIIMLPNFVMNLLRGIKKDAALTAPVKNDYVVFGEFYDSLATTSLHKKFNNYLKIAMVKE 293

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
              H  R   A+   + G +   +    G   V     TY+ 
Sbjct: 294 IVMHEFRHSHASYLINKGVSPLVVAQRLGHSDVATTLNTYSH 335


>gi|228942100|ref|ZP_04104640.1| YdcL (Lambda integrase-like, N-terminal,DNA breaking-rejoining
           enzyme, catalytic core) [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228981669|ref|ZP_04141964.1| YdcL (Lambda integrase-like, N-terminal,DNA breaking-rejoining
           enzyme, catalytic core) [Bacillus thuringiensis Bt407]
 gi|228777781|gb|EEM26053.1| YdcL (Lambda integrase-like, N-terminal,DNA breaking-rejoining
           enzyme, catalytic core) [Bacillus thuringiensis Bt407]
 gi|228817434|gb|EEM63519.1| YdcL (Lambda integrase-like, N-terminal,DNA breaking-rejoining
           enzyme, catalytic core) [Bacillus thuringiensis serovar
           berliner ATCC 10792]
          Length = 352

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 47/282 (16%), Positives = 93/282 (32%), Gaps = 30/282 (10%)

Query: 70  TLKWLISEYRK--SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR- 126
           T + +   Y    +      ++N+     + ++ ++++ G      IT +H+        
Sbjct: 56  TFEHVADSYFNWYTQRRKQSSINTIK--NAIYNHLMKEFGKMKIDCITPRHVMDYQNKMI 113

Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP-KRKTEGIRPWTKEDMQQFKS 184
            +++     +F T++  +F + ++   +  NP        K   + I  W  E+ +QF S
Sbjct: 114 NEYSAEYLKKFHTTLSAIFNFGIKFHGLTTNPARIAGNFQKESKKRINFWEFEEFKQFIS 173

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG------------TI 232
              E    +  F  L YSG R  +      + +     +I   KT             + 
Sbjct: 174 VVDEPMY-KAFFSTLYYSGARKGELLALTWEDINFEEKTINIHKTKYNRQVTEPKTKASN 232

Query: 233 ITVELPDGFMKLLA--------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284
             + LP+  M LL           P+  +          +  T     F      A V +
Sbjct: 233 RIIMLPNFVMNLLRGIKKDAALTAPVKNDYVVFGEFYDSLATTSLHKKFNNYLKIAMVKE 292

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
              H  R   A+   + G +   +    G   V     TY+ 
Sbjct: 293 IVMHEFRHSHASYLINKGVSPLVVAQRLGHSDVATTLNTYSH 334


>gi|299771264|ref|YP_003733290.1| putative prophage integrase [Acinetobacter sp. DR1]
 gi|298701352|gb|ADI91917.1| putative prophage integrase [Acinetobacter sp. DR1]
          Length = 388

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 40/246 (16%), Positives = 85/246 (34%), Gaps = 22/246 (8%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPS 131
           ++ E+         +     + E     +     +    ++  KHI   ++    K T  
Sbjct: 87  VVEEWLSIMKSQWTSKKYYDTVEYRLAYLTEDFKNLPINEVERKHISKKIKEIVAKGTLE 146

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVE--RPKRKTEGIRPWTKEDM-QQFKSFWSE 188
           +A + L   + +F +A+  +Y   NPC  VE   P+ +++        +M + F+   + 
Sbjct: 147 TASRALRLGKQVFDFAIASDYSDRNPCTLVEDVIPEYESDSHPCLPASEMPEFFRRMHAS 206

Query: 189 GSQ--PRLAFEFLLYSGLRCSDSCRAGVQ----HLQNNIFSIK--TQKTGTIITVELPD- 239
            S    ++A   + Y+G R ++  +A         +N ++ I     K    + V L   
Sbjct: 207 HSSSIVKMAMLLVCYTGTRITELLKARWDSGELDFENKVWIIPADRMKRRKELMVPLVPQ 266

Query: 240 --GFMKLLAMTPIGKETFFINNDKQK---MNATQFSIWFKAKATKAGVNKSAHGVRKFSA 294
                K L          F     +    M +       K    +  +    HG R   +
Sbjct: 267 IYALFKELESVKTDDGYIF-KKRGKPYEYMTSESVLTMIKRMGYEDKM--VTHGFRSLFS 323

Query: 295 TISADA 300
           T + ++
Sbjct: 324 THANES 329


>gi|295678042|ref|YP_003606566.1| integrase family protein [Burkholderia sp. CCGE1002]
 gi|295437885|gb|ADG17055.1| integrase family protein [Burkholderia sp. CCGE1002]
          Length = 438

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 43/276 (15%), Positives = 84/276 (30%), Gaps = 44/276 (15%)

Query: 96  ESYFDQIIRKSG---DFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVR 149
           E     I R           ++T   ++  +E+R    H PS   + L ++  LF  AV 
Sbjct: 141 EQNLKNIRRDFPGLIAKRLDEVTRPMMKKWIEARIAAGHKPSGINRTLGAIGGLFTHAVE 200

Query: 150 QEYVAINPCLSVE---RPKRKTEGIRPWTKEDMQQFK----------------------- 183
            E +  NPC  +     P+ +    R  T ++  + +                       
Sbjct: 201 HEIIGSNPCARLRCKTDPEEEAGHGRELTVDEEARLRGALVAREARIREAAELADGRRIT 260

Query: 184 ----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ----KTGTIITV 235
               +  +     R A    + +GLR S+  R   + +     +I  +    K      V
Sbjct: 261 NLPAAHHAFVDHVRPAIIVAINTGLRRSELLRLEWKSVDLKARTITVEPATSKVKRRRVV 320

Query: 236 ELPDGFMKLLAMTPIGKE--TFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFS 293
            +     + L       +    F +   + +   +     K  A     +      R  +
Sbjct: 321 PMNREAYETLMAWRRQVKWARVFTDELGRALREVRDWDEVKRAAQI--TDFRFMDTRHHT 378

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           AT   + GA+ + +    G       + Y K  +  
Sbjct: 379 ATRMINEGASQYHVQKILGHADSRMTQRYMKARETK 414


>gi|293369636|ref|ZP_06616214.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|292635340|gb|EFF53854.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
          Length = 409

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 46/266 (17%), Positives = 87/266 (32%), Gaps = 35/266 (13%)

Query: 90  NSRISF---ESYFDQIIR---KSGDFDYRKITTKHIRSG----VESRKHTPSSAIQFLTS 139
            +   +     +  + I+      D   ++IT   I         + K   ++  +F+  
Sbjct: 129 ATYRKYEVTRRHLAEFIQSKYNVSDISIKEITPMFITDFELYLRTACKCGYNTTAKFMQF 188

Query: 140 MRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQQFKS---FWSEGSQPRLA 195
            + +   A     +  +P  S + R ++   G    T+++++               R  
Sbjct: 189 FKRIIIIARNNGILVGDPFASYKIRLEKVDRGY--LTEDEIKIILKKKMVSERLEHVRDL 246

Query: 196 FEFLLYSGLRCSDSCRAGVQHL-----QNNIFSIKTQKTGTIITVELPDG----FMKLLA 246
           F F  + GL  SD      +++      N     K  KT T + V L D       K   
Sbjct: 247 FVFSCFCGLAYSDVANLRQENIQKSFDGNLWIITKRVKTNTDVNVPLLDIPKMILKKYKG 306

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS-ADAGAT 303
             P GK    I+N K        + + K  A   G+ K  + H  R   AT +    G  
Sbjct: 307 KLPDGKILPVISNQK-------LNAYLKEIADICGIKKNLTFHLARHTFATTTTLSKGVP 359

Query: 304 AHELMATYGWKTVDQAETYTKGADRI 329
              +    G   ++  + Y +  +  
Sbjct: 360 IETVSKMLGHTNIETTQIYARITNSK 385


>gi|153802484|ref|ZP_01957070.1| phage integrase [Vibrio cholerae MZO-3]
 gi|124122003|gb|EAY40746.1| phage integrase [Vibrio cholerae MZO-3]
          Length = 407

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 42/318 (13%), Positives = 88/318 (27%), Gaps = 50/318 (15%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD 110
            +   P+ ++ +   +    L+ L  ++  S     +  ++   ++      I   G   
Sbjct: 66  YSAHFPESKHASGVPQAKNLLQ-LTKQFLASKD-HDIRRSTLQRYDWVLRDFIEIYGKTR 123

Query: 111 YRKITTKHIRSGVES---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167
                +    +       +  T  +  + L ++     W  + EYV+ +    ++R K  
Sbjct: 124 SSDTLSPRTLTEFRQELVKGKTGRTINRNLVTINAFLAWLYKMEYVSRDLSKVLQRVKES 183

Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK 225
              I+P++  ++           Q R     L+YSG+R  + C    + +   N    I+
Sbjct: 184 EVDIQPFSMTEIDSILKHC-HQLQHRNIVTLLVYSGIRSGELCALAWEDVDFENKTIHIR 242

Query: 226 TQ----------KTGTIITVELPDGFMKLLAMT--------PIGKETFFINNDKQK---- 263
                       KT     V+L    +  L           P   +        +K    
Sbjct: 243 RSTYDMRGLKTTKTDKERFVDLLPPALDALKAQQYLTYSFEPKEYDVELPGQAYRKESLR 302

Query: 264 ------------------MNATQFSIWFKAKATKAGVNKS-AHGVRKFSATISAD-AGAT 303
                                      + A   K GV     + +R   A+     A   
Sbjct: 303 FVFNPKVVREQKVSGYDYYGKRALGRMWTALCKKGGVRYRNQYQLRHTYASWMITHANVN 362

Query: 304 AHELMATYGWKTVDQAET 321
              L    G   +     
Sbjct: 363 VSYLAQQMGHADITMVAR 380


>gi|16519924|ref|NP_444044.1| DNA integration/recombination/inversion protein [Sinorhizobium
           fredii NGR234]
 gi|2497423|sp|P55639|Y4RF_RHISN RecName: Full=Putative integrase/recombinase y4rF
 gi|2182603|gb|AAB92472.1| DNA integration/recombination/inversion protein [Sinorhizobium
           fredii NGR234]
          Length = 425

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 41/282 (14%), Positives = 82/282 (29%), Gaps = 36/282 (12%)

Query: 76  SEYRKSAHWGSLAVNSRISF----ESYFDQIIRKSGDFDYRKITTKHIRSGVESR----- 126
           S+Y ++     L   +R         + D    +    +   +T +H+ + VE R     
Sbjct: 133 SDYLRTVR--GLEPKTREGILLGGRRFLDWFRHRHPGQNLEALTAEHVLAAVEHRLSLSA 190

Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP----WTK--EDM 179
              T ++A   + +      WA    +   +    V R         P    W      +
Sbjct: 191 TSGTRTAATSHIRTFLRFLCWA---GHHRQDLARIVPRTPYWRLAHLPPRLAWGDVRRAI 247

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVEL 237
               +      + R     L  +G+R  +     +Q +        I+  K      V L
Sbjct: 248 DAIGATTPVAIRDRAVLLLLATTGIRNGELRAIRLQDIDWRTGEVFIRRTKGKRDRVVPL 307

Query: 238 PDGFMK-----LLAMTPIGKETFFINNDKQKMNATQ--------FSIWFKAKATKAGVNK 284
            +         +L   P     +   +    + A +             +    + G   
Sbjct: 308 LEETGAALVDYILRARPKVDSPYLFLSFTPPVGAFKSAAPVSRIVRKRLRHGGVELGRVA 367

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            AH +R   AT         +E+    G ++++    Y K A
Sbjct: 368 GAHLLRHSLATQLVGQRRPINEVADLLGHRSINTTALYVKVA 409


>gi|315608474|ref|ZP_07883461.1| integrase [Prevotella buccae ATCC 33574]
 gi|315249800|gb|EFU29802.1| integrase [Prevotella buccae ATCC 33574]
          Length = 438

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/212 (15%), Positives = 74/212 (34%), Gaps = 12/212 (5%)

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
              P++A + + + + +     +   +  +P ++      +       T E++ +  +  
Sbjct: 209 GQNPNTATKTMKTFKTITILGRKMGVLNHDPFIN-HHFHLEPVNRGFLTDEEIMKIANKD 267

Query: 187 SEGSQ---PRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPD 239
              ++    R  F F  ++GL   D       ++           K QKT     V L D
Sbjct: 268 FGINRLELVRDVFIFSCFTGLAYIDVSNLTPDNIVTLDDKQWIMTKRQKTSVETNVLLLD 327

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS 297
              +++  T  G +T+        +   + + + K  A   G+ K  + H  R   AT+S
Sbjct: 328 IPKRII--TKYGHKTYRDGKLLPVLTNQKINAYLKEIADLCGIKKRLTFHLARHTFATMS 385

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              G     +    G   +   + Y +  ++ 
Sbjct: 386 LSKGVPMESVSKMLGHTNIKTTQIYARITNKK 417


>gi|124004365|ref|ZP_01689211.1| transposase, putative [Microscilla marina ATCC 23134]
 gi|123990435|gb|EAY29934.1| transposase, putative [Microscilla marina ATCC 23134]
          Length = 420

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 47/291 (16%), Positives = 95/291 (32%), Gaps = 39/291 (13%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQI----IRKSG--DFDYRKITTKHIR------- 120
           L+    +SA+   L   ++   +     +      + G  D     +  +  +       
Sbjct: 116 LLEVLTRSANRSGLRSGTQRKIKISIQNLKLFLRDEYGKEDIYLTDLLKEAYKGFDIRYV 175

Query: 121 -----------SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINP-CLSVERPKRKT 168
                       G         +AI+ +   R     AV+   +  NP     + PK + 
Sbjct: 176 DWCTTKTTIRFDGSTRLPKKHQTAIKEVRHFRQAVNTAVQLGEIRTNPLIAKFKIPKDER 235

Query: 169 EGIRPWTKEDMQQFKSFW---SEG-SQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNN 220
                 T ++++Q          G  + R  F F  ++G   SD      +HL    +  
Sbjct: 236 PKRVILTLDELKQIMEVDLSDKRGMERVRDCFVFQCFTGFAFSDIVDLKPEHLIEQGERT 295

Query: 221 IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK--QKMNATQFSIWFKAKAT 278
               +  K+ TI  + L      +L       +   ++       + +  ++ + K  A 
Sbjct: 296 WIIKERVKSSTIAKMPLLPQARFILD--KYKDDPVCLSKGVLIPVITSGNYNTYLKMIAE 353

Query: 279 KAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
             G++K  ++H  R+  AT+  +AG    +L    G       E Y   A+
Sbjct: 354 YVGIDKHLTSHVGRRTFATLVYNAGTDRSKLKEMTGHTNEAITEIYASLAN 404


>gi|89894951|ref|YP_518438.1| hypothetical protein DSY2205 [Desulfitobacterium hafniense Y51]
 gi|89334399|dbj|BAE83994.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 307

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 38/279 (13%), Positives = 93/279 (33%), Gaps = 36/279 (12%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT- 129
               I+ Y++    G++A  +   +E  + ++   + D     +     +  + +   T 
Sbjct: 7   FGEWINLYKR----GTVAAPTLQKYEMTYQRLKELAPDLTLEGLNRGTYQGVLNAYAATH 62

Query: 130 -PSSAIQFLTSMRVLFKWAVRQEYVAINPCLS--VERPKRKTEGIRPWTKEDMQQFKSFW 186
              + + F   ++     A     +  +P     V+      +  +  +  ++++  S  
Sbjct: 63  EKQTVMDFHRHLKACLADAREDGIITCDPTRKAVVKGKMPAAKKTKYLSMAELRKLLSVL 122

Query: 187 SEGSQPRLAFEFLLY----SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE------ 236
                 ++ F++++     +GLR +++          ++  I  +KT             
Sbjct: 123 PLN-PEKVGFDWMILLLAKTGLRYAEALALTPSDFDLSMQKIYVRKTWNYKFAPYGFAPT 181

Query: 237 -----LPD---------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
                + D          F  L+   P G    F++   +  N+T  +         AGV
Sbjct: 182 KNSSSMRDVSIDAKTATQFKTLIRDLPEGNP-IFVDKGTRIFNSTA-NNALARYCRTAGV 239

Query: 283 NK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
              SAH +R   A++   AG +   +    G       +
Sbjct: 240 PIISAHSLRHTHASVLIAAGVSIQTVSRRLGHSNTITTQ 278


>gi|315149122|gb|EFT93138.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0012]
          Length = 309

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 44/288 (15%), Positives = 91/288 (31%), Gaps = 44/288 (15%)

Query: 73  WLISEYRKSAHWGSL------AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
            L  EY   + W  L         S   +     ++   +     + +  +  +  +   
Sbjct: 9   QLFHEYF--SEWVELYKVGAIRDISLQKYYIAEQRLAELAPGLKVKHLDRQRYQQLLNDY 66

Query: 127 KHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV----ERPKRKTEGIRPWTKEDMQ 180
             T    + + F   ++     AV +  ++ NP   +    + P+ K        + ++Q
Sbjct: 67  ALTHERQTTMDFHHQLKGAILDAVDEGLISKNPTRKIVIKGKAPRPKKSKF--LNQFEVQ 124

Query: 181 QFKSFWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSIKTQKT--------- 229
                   G Q    +  LL   +GLR S++     +    +   I  +KT         
Sbjct: 125 ALLKELELGEQLNWDWFILLVVKTGLRFSEALALTPKDFDFSKQKITIEKTWNYKNSTGF 184

Query: 230 -----------GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKAT 278
                         I  +    F +L+   P  +  F      +  N+T  +   K    
Sbjct: 185 FQSTKNESSKRKVQIDWQTAMQFSQLIRNMPPMEPIFV---KGRVFNST-INSRLKVLCK 240

Query: 279 KAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
           +A +   + H +R   A++   AG +   +    G  ++    ETY  
Sbjct: 241 RAQIPVITVHSLRHTHASLLLFAGVSIASVATRLGHSSMTTTQETYLH 288


>gi|229170806|ref|ZP_04298420.1| Integrase-recombinase [Bacillus cereus AH621]
 gi|228612644|gb|EEK69853.1| Integrase-recombinase [Bacillus cereus AH621]
          Length = 314

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/180 (16%), Positives = 64/180 (35%), Gaps = 24/180 (13%)

Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFS 223
           +    R  + +++ +   F+ E            L  +G R  + C A V+ L  +  + 
Sbjct: 115 QDRPNRDLSYDEVMKILGFYKERGHVVNYAILLALASTGARIQELCTARVKDLHYDGKYW 174

Query: 224 IKTQKTGTIIT-VELPDGFMKLLA----------MTPIGKE-TFFINNDKQKMNATQFSI 271
           ++ +  G  +  + +P+   + ++          +   G E   F+N      N    S 
Sbjct: 175 LRVKGKGDKVRELFIPEYLYQCISEMRRRRGFQTILDRGDECPLFVNQRGNFYNPKTLSN 234

Query: 272 WFKAKATKAGVN--------KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETY 322
                  K  ++         +AH  R   A ++ + G A  + LM T G + +   + Y
Sbjct: 235 QVTDMIKKTNLDFLKYRENPVTAHTFRHAFAIMAVEQGNADLYHLMQTLGHENIQTTKIY 294


>gi|254456694|ref|ZP_05070123.1| site-specific recombinase, phage integrase family [Candidatus
           Pelagibacter sp. HTCC7211]
 gi|207083696|gb|EDZ61122.1| site-specific recombinase, phage integrase family [Candidatus
           Pelagibacter sp. HTCC7211]
          Length = 317

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 48/283 (16%), Positives = 96/283 (33%), Gaps = 44/283 (15%)

Query: 88  AVNSRISFESYFD---QIIRKSG-DFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL 143
           A N+  +++S F        K G +    +     +     S+    S+  + L S+ ++
Sbjct: 24  ANNTLRAYKSDFKDFGAFCSKHGLNSLPSEPKIVALYLTHLSKNSKISTLRRRLVSISMV 83

Query: 144 -----FKWAVRQEYVAINPCLSVERPKRK-TEGIRPWTKEDMQQFKSFWSE-------GS 190
                F    +   +  N    ++R K    +G +P     ++   +   E        +
Sbjct: 84  HKLKGFYLDTKHPIIVENLM-GIKRVKGSIQKGKKPLLINHLKSIINVIDEQKIEDIKKA 142

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQ----NNIFSIKTQKT---GTIITVELPD---- 239
           + +         G R ++        L+        +I+  KT   G  +   LP     
Sbjct: 143 RDKTIILIGFGGGFRRTELISIDHDDLEFVPEGLKITIRRSKTDQFGEGMIKGLPYFTNE 202

Query: 240 ------GFMKLLAMTPIGKETFFINNDK------QKMNATQFSIWFKAKATKAGV---NK 284
                    K L ++ I     F    K      +++      +  K     +G+   N 
Sbjct: 203 KYCPVVNLKKWLEISKISSGPIFRRFSKGSSLTDKRLTDQSVVLLMKEYLNLSGIENKNF 262

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           + H +R   AT++A++GA    +MA  G KT      Y + A+
Sbjct: 263 AGHSLRSGFATVAAESGADERSIMAMTGHKTTQMVRRYIREAN 305


>gi|167769658|ref|ZP_02441711.1| hypothetical protein ANACOL_00992 [Anaerotruncus colihominis DSM
           17241]
 gi|167668019|gb|EDS12149.1| hypothetical protein ANACOL_00992 [Anaerotruncus colihominis DSM
           17241]
          Length = 410

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 58/380 (15%), Positives = 107/380 (28%), Gaps = 75/380 (19%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
           E  R      Y  K   ++  L   ++S      +     +  K + I +      TL  
Sbjct: 17  ETQRADGSYMYVYKLGTKKKYL---YDSDLASLRVKEKQINKDKDDGIRTQEAMKLTLND 73

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQI--IRKSGDFDYRKITTKHIRSGVESRKHTPS 131
           +   Y    +   L  ++R ++   +D         +    +I    I +          
Sbjct: 74  MFKVYMN--NNIKLKPSTRANYLYLWDFYVKEEPFANMPLPQIHRSDILAFYTKLLKHGF 131

Query: 132 SAIQ---FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ-------- 180
           +        T +    + AV  +Y+  NP   + R K KT+G  P  K  +         
Sbjct: 132 AINSLESINTIVHPTLEMAVDDDYIRKNPSKGIYR-KLKTDGSAPKPKRRIALTKTQQQN 190

Query: 181 --QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-----------------NN- 220
             +F +     S        LL +G+R ++        +                  +  
Sbjct: 191 FLRFIAKSPTYSHWLPIMTVLLGTGMRVAECTGITKSDINLSENTISVNHNLIYRVIDGK 250

Query: 221 -IFSIKTQKT--GTIITVELPDGFMKLLAMT--------PIGKETF-------FINNDKQ 262
             F I T KT  GT I   L     + L +         P  +          F N    
Sbjct: 251 AGFHITTPKTESGTRIIPILYPEVAEQLRLQIETIDALYPDDQLVLGGVHGFVFRNRTGS 310

Query: 263 KMNATQFSIWFK--------AKATKAGV---------NKSAHGVRKFSATISADAGATAH 305
            M+A   +   +         +  +A +         + S H +R    T   ++     
Sbjct: 311 FMSAHNINRAIERISVTYNMEEMDQAELEDREPDLLPHFSVHNLRHTFCTRLCESTNDVK 370

Query: 306 ELMATYGWKTVDQA-ETYTK 324
            +    G        + YT 
Sbjct: 371 FIQQVMGHADFSTTMDIYTH 390


>gi|158335422|ref|YP_001516594.1| phage integrase, putative [Acaryochloris marina MBIC11017]
 gi|158305663|gb|ABW27280.1| phage integrase, putative [Acaryochloris marina MBIC11017]
          Length = 369

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 44/263 (16%), Positives = 96/263 (36%), Gaps = 26/263 (9%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--TPSSAIQFLTSMRVLFK 145
           +  S  +      + + K  D    ++T  H R  +  +    T  +A   +  +   +K
Sbjct: 96  SPRSVETRYIPLSRALNKWLDMPAHEVTKDHARHFMSIQSEHVTADTAKARIGLLGSCWK 155

Query: 146 WAVRQEYV-AINPCLS--VERPKRKTEGIRPWTKEDMQQFKSFWSEG---SQPRLAFEFL 199
           WA+++E +   NP +   V    + T+ ++P+ +E+++   S +      S       FL
Sbjct: 156 WAIQEELLATDNPWVGLRVALKPQPTQRVKPFNREEIKAILSEFRNNRYYSHYSDFVIFL 215

Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSI-----------KTQKTGTIITVELPDGFMKLLAM- 247
              G R  ++     +H+ ++  ++           K+ KTG   T+ L      +L   
Sbjct: 216 FGVGCRFGEAAGLLWKHIADDFQTVWIGESVSRGYRKSTKTGKARTIVLSPNVQSMLKAR 275

Query: 248 ----TPIGKETFFINNDKQKMNATQFSIW-FKAKATKAGVNKS-AHGVRKFSATISADAG 301
                P  ++  F +     +    F    +K    K G+     + +R  + + +  +G
Sbjct: 276 YERLKPNLEDLVFPSPQGLPICDRSFRRRAWKTVLIKCGIEYRKPYAIRHSAVSHALASG 335

Query: 302 ATAHELMATYGWKTVDQAETYTK 324
           A    +    G       E+Y  
Sbjct: 336 ADPISVAEQSGHDKRVMLESYAH 358


>gi|154505395|ref|ZP_02042133.1| hypothetical protein RUMGNA_02917 [Ruminococcus gnavus ATCC 29149]
 gi|153794321|gb|EDN76741.1| hypothetical protein RUMGNA_02917 [Ruminococcus gnavus ATCC 29149]
          Length = 408

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 47/401 (11%), Positives = 107/401 (26%), Gaps = 83/401 (20%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPA-----YMSALTGSTPKREYINSPR---- 65
           ++R     Y  R G  +R    Y +  T +       Y   L     K   I   +    
Sbjct: 3   KSRKDSRGYVLRTGESQRKDGRYSYSYTDLDKNRRTVYAKTLVELRAKERKIIRDKEDGL 62

Query: 66  ----KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK------SGDFDYRKIT 115
                   TL  L   + +      L  ++++++   ++  +R        G   Y  + 
Sbjct: 63  NPQLADRMTLNELYDRFIEQK--YDLKPSTKVNYLYMYNHFVRPTFGKRLIGKIKYSDVK 120

Query: 116 TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV-----ERPKRKTEG 170
             + R  ++  +   ++     T +   F+ AVR   +  NP   +     +    +   
Sbjct: 121 KFYYRIILDE-EMKANTLDSIHTQLHPAFQMAVRDGLLRQNPTDGLMAEIKKSHIWEDNP 179

Query: 171 IRPWTKEDMQQFKSFWSEGSQPRLA---FEFLLYSGLRCSDSCRAGVQHLQ--------N 219
               T    + F  +     + +        LL +G+R  +        L         N
Sbjct: 180 RHALTIPQQKAFMDYLKAHREYQGWVPIITVLLGTGMRIGECIGLRWDDLDFEKRIVSVN 239

Query: 220 NIFSIKTQKTGTII-------------TVELPDG----FMKLLAMTPIGKET-------- 254
           + F  +  +    +             T+ + D     F+    +      +        
Sbjct: 240 HTFIYRPDENRKSVKHISTPKTISGRRTIPMIDEVFNAFLDEYEIQKCIGFSSEEIDGYS 299

Query: 255 --FFINNDKQKMNATQFSIWFKAKATKAGVNK-----------------SAHGVRKFSAT 295
              F+            +   +        ++                 SAH +R    T
Sbjct: 300 NFVFVTATGTVYLPNAVNRAIERARVAYNKDEIEIAEKEDREPLIIPHFSAHHLRHTFCT 359

Query: 296 ISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKN 335
              +  +    + +  G   +    + Y +     +  I  
Sbjct: 360 RLCENESNLKVIQSIMGHSDITTTMDVYAEATQEKKQEIVA 400


>gi|320354776|ref|YP_004196115.1| integrase family protein [Desulfobulbus propionicus DSM 2032]
 gi|320123278|gb|ADW18824.1| integrase family protein [Desulfobulbus propionicus DSM 2032]
          Length = 484

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 43/255 (16%), Positives = 77/255 (30%), Gaps = 36/255 (14%)

Query: 107 GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP-- 164
           G F  + +      +  +S K  P +  + +     LF WAVR  Y  +N    ++    
Sbjct: 210 GRFAGKSVRQLLQMNIPDSAKMHPRTINEKVQRTSSLFLWAVRHGYTTVNVFEGLKMRLQ 269

Query: 165 -KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE-----FLLYSGLRCSDSCRAGVQHLQ 218
            K   E     + +  + F        + R  F+       LY+G R  +  +  VQ + 
Sbjct: 270 SKASEERAVFDSDDLGKLFDPERFTPEKIRKPFQYWCTLLALYTGARAQELAQLRVQDVF 329

Query: 219 N---NIFSIKTQK-------TGTIITVELPD------GFMKLLAMTPIGKETFFINNDKQ 262
                +++I+  K       T +   + L            +      G E  F      
Sbjct: 330 EAEPGLWAIRIAKEAGKLKTTASQREIPLHPVIIQRGFLDHVSRTKAAGHERLFPEAWDT 389

Query: 263 KMNA-TQFSIWFKAKATKAGVNKS----------AHGVRKFSATISADAGATAHELMATY 311
                 + S WF       G+ ++           H  R   A     AG    ++    
Sbjct: 390 GNGPGDKLSRWFANYRKTLGIGRTKKGDGKPNKCFHSFRHCFADALKQAGVDPLKIAQLM 449

Query: 312 GWKTVDQAE-TYTKG 325
           G    + +   Y K 
Sbjct: 450 GHSDPNISTGRYGKA 464


>gi|310658541|ref|YP_003936262.1| tyrosine recombinase [Clostridium sticklandii DSM 519]
 gi|308825319|emb|CBH21357.1| putative tyrosine recombinase [Clostridium sticklandii]
          Length = 371

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 50/337 (14%), Positives = 104/337 (30%), Gaps = 41/337 (12%)

Query: 41  STFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESY-F 99
             F+  Y   L  +      +         LK+LIS      H  +L+  +   F     
Sbjct: 33  PHFMKDYFIYLKNAVSLSTRLAYLEDIEFFLKYLISNDESFIHLNNLSEITIEQFSKLKA 92

Query: 100 DQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL 159
             I    G++  R + + +    +   K+   S  +  +S+  LFK+  R   +  N   
Sbjct: 93  RDINYYIGEYCTRYLKSINGNDYL--FKNDNRSLARKKSSLSSLFKYMYRNNQLENNITD 150

Query: 160 S---VERPKRKTEGIRPWTKEDMQQFKSFWSEG---------------SQPRLAFEFLLY 201
               ++ PK + + I+    +++       S G                + +      + 
Sbjct: 151 GFNPIKLPKPQPDAIKKLAVDEVAIMLDIVSTGEGLTDKEKIYWEKTKLRDKAILLLFVT 210

Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLL-----AMTPIGK--- 252
            GLR S+  +  +          K  +K      + L     K L        P      
Sbjct: 211 YGLRLSEIQQLNLSSFNYGRDEFKIYRKRSKEALMPLNSTIKKALDDYISCERPNSDLLD 270

Query: 253 ----ETFFINNDKQKMNATQFSIWFKAKATKA-----GVNKSAHGVRKFSATISADAGAT 303
               +  F++   +++         K   + A         S H +R  +A+   D G +
Sbjct: 271 ENNEDALFLSIQNKRLTMKAIRELVKKYTSLAMGTTRDKGYSPHKLRATAASSLIDYGFS 330

Query: 304 AHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
            +++      + +   + Y+  A R  L     +   
Sbjct: 331 IYDVKTLLDHENITTTQLYS--AQRKNLKRDIIKNFE 365


>gi|322688910|ref|YP_004208644.1| phage integrase [Bifidobacterium longum subsp. infantis 157F]
 gi|320460246|dbj|BAJ70866.1| phage integrase [Bifidobacterium longum subsp. infantis 157F]
          Length = 418

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 56/370 (15%), Positives = 113/370 (30%), Gaps = 73/370 (19%)

Query: 23  YYFRK-------GHGRRIRLPYPHESTFIPAYMSALTGSTPKR---EYINSPRKKPTTLK 72
           + FR+          RR                 A      +        SP  K    +
Sbjct: 23  WEFRREVGRDPATGKRRYVSAKGRTKAGARERFDARIAEMERTGLLPGAKSPYLKDYAER 82

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE--SRKHTP 130
           WL  EYR      ++   +  +        +   G      +T  H+R  +   S++  P
Sbjct: 83  WL-EEYR-----LNVKPTTYRTRAGRIHACMEVIGCVRLTDLTPDHVRQCMRVLSKRLAP 136

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF-KSFWSEG 189
           S+      S++++   A  +E + ++PC  V  P+ +    R  + +  +Q  ++  + G
Sbjct: 137 STLKDHFVSLKMMLDQAELEELIPVDPCRRVRPPRVEPTETRILSPDQPKQLIEAVPNRG 196

Query: 190 SQPR-------------LAFEFLLYSGLRCSDSCRAGVQHLQN----------------- 219
           ++ R             L FE    +G+R  +        L+                  
Sbjct: 197 AKRRGPALTVDVDESWMLLFELAFAAGMREGERYALMPYELEQRDGVPGINVQQQIQQYG 256

Query: 220 -----------------NIFSIKTQKTGTI-ITVELPDGF-----MKLLAMTPIGKETFF 256
                             I  + T KT      V +          ++  +    +E  F
Sbjct: 257 KPEDAVIPAWLKAEHLYGILWLTTPKTHAAHRFVPISTSLWQRLWARVKRLDIGPRELIF 316

Query: 257 INNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKT 315
            N+    + ++     +      AG+   + H  R ++A+++A A        A  G  +
Sbjct: 317 TNSRGNPVRSSTERHNWNKALKAAGLPPVTIHSARHWTASMTARANMPDDARTAIMGHTS 376

Query: 316 VDQAETYTKG 325
           +     YT  
Sbjct: 377 ISMTNHYTHR 386


>gi|283851760|ref|ZP_06369038.1| integrase family protein [Desulfovibrio sp. FW1012B]
 gi|283572880|gb|EFC20862.1| integrase family protein [Desulfovibrio sp. FW1012B]
          Length = 296

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 41/276 (14%), Positives = 84/276 (30%), Gaps = 33/276 (11%)

Query: 92  RISFESYFDQIIRKSGDF----DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWA 147
           R     + + I++  G      +         R+ +  ++ +P +    L+ +R +   A
Sbjct: 25  RTETGRWNNHIVKYFGSTHLVENITNKNLLSFRAALVKKRLSPQTITHCLSLLRRVLHRA 84

Query: 148 VRQEYVAINPCL--SVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP-RLAFEFLLYSGL 204
            + + +        + + PK   + +R  TK +        S  SQ         L++GL
Sbjct: 85  QQWDLLD---AKLPNFDMPKFDNKRVRFLTKSEANTLLVELSLKSQLWHDISLLALHTGL 141

Query: 205 RCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ 262
           R  +       H    N+   I   K+    ++ L      +L     G   F      +
Sbjct: 142 RAGEIFSLRPSHFDQPNSALYIFETKSNRNRSIPLNATARHILKANCAGSTDFVFKEHDR 201

Query: 263 K-------MNATQFSIWF------KAKATKAGVNKSAHGVRKFSATISADAGATAHELMA 309
           +        +    +  F      + +          H +R   A+    AG     +  
Sbjct: 202 QIKNVNRIFSTAVQTCQFNTPTQDRRQRVV------FHTLRHTFASWLVQAGTPLIVVSQ 255

Query: 310 TYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345
             G K++     Y   A     G    + +   VD 
Sbjct: 256 LLGHKSLQMTSRYAHLAPTQ--GATAVKALEQFVDY 289


>gi|227545543|ref|ZP_03975592.1| integrase [Lactobacillus reuteri CF48-3A]
 gi|300908387|ref|ZP_07125850.1| phage integrase family site-specific recombinase [Lactobacillus
           reuteri SD2112]
 gi|227184480|gb|EEI64551.1| integrase [Lactobacillus reuteri CF48-3A]
 gi|300893794|gb|EFK87152.1| phage integrase family site-specific recombinase [Lactobacillus
           reuteri SD2112]
          Length = 405

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 59/356 (16%), Positives = 117/356 (32%), Gaps = 42/356 (11%)

Query: 9   PFVTKERTRHGKIIYYFRKGH----GRRIRLPYPHEST---FIPAYMSALTGSTPKREYI 61
            +        G   Y    GH    G+RI+     ++    F  A+ +       K EY 
Sbjct: 8   KYPDVYVDNKGHYYYLVELGHDLLTGKRIQKKSRRDANNNRFRSAHDAYKECLRIKNEYQ 67

Query: 62  NSPRKKPTTL--KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119
           +        L     +  Y   ++   +  ++  S +S F  +I+  G +  R I +   
Sbjct: 68  SQNGYANYGLLYSDFMKNYYIPSYQSDVERSTFKSRQSTFKHLIKWFGQYKLRSIRSIDC 127

Query: 120 RSGV----ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
                       ++   +    +  R    +AVR +++A NP    +   +    +  WT
Sbjct: 128 EKFRVYLLNKSGYSQGFSSMVYSMFRNTLDYAVRMDFLAKNPSRKTKAINKGKSNVAFWT 187

Query: 176 KEDMQQFKSF-WSEGSQPRLAFEFLLY---SGLRCSDSCRAGVQHLQNNIFSIKTQKT-- 229
           K + ++  S  +++     + F  L      G+R S+        +      ++  KT  
Sbjct: 188 KSEFEKVLSVIYTKDYYQHMCFTILYLYFTCGMRVSEGLALTYDDVDYKRHRLRIHKTLD 247

Query: 230 ----------------GTIITVELPDGFMKLLAMTPIGKE-----TFFINNDKQKMNATQ 268
                             I T+ L +  +++L      ++      F ++ D   M+ T 
Sbjct: 248 MTNKEHYTIKPYTKTINGIRTISLDNDTIRVLKSWQKDQQAHGVYHFIMSYDDTPMSRTT 307

Query: 269 FSIWFKAKATKAGVN-KSAHGVRKFSATISA-DAGATAHELMATYGWKTVDQAETY 322
             +  K  A  AGV    A G+R  + +    +  A    +    G    D    Y
Sbjct: 308 IPLIIKRFAKIAGVKPIQAKGLRHSNVSYLINEFNADVLTVSRRLGHSGPDITLKY 363


>gi|224540989|ref|ZP_03681528.1| hypothetical protein CATMIT_00140 [Catenibacterium mitsuokai DSM
           15897]
 gi|224526088|gb|EEF95193.1| hypothetical protein CATMIT_00140 [Catenibacterium mitsuokai DSM
           15897]
          Length = 335

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 38/238 (15%), Positives = 76/238 (31%), Gaps = 28/238 (11%)

Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAV-----RQEYVAINPCLSVERPKRKTEGIRP 173
               +E+R ++P +    L  ++    +A         Y+     LSV+  K  T  +  
Sbjct: 67  FIEWLENRGNSPVTINHRLAGIKSFINFAQYESVENLAYLQT--VLSVKSLKTTTRQVDY 124

Query: 174 WTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQK 228
            T+E M    +        G + R+    L  +G R  + C   ++ +   N  ++K   
Sbjct: 125 LTEEQMNNLINLPPTDTSTGIRHRIIMCLLYDTGARVQELCDLKIEDINLGNNPTVKLHG 184

Query: 229 TGTIITV-ELPDGFMKLLAM--------TPIGKETFFINNDKQKMNATQFSIWFKAKATK 279
            G+ I +  +     ++L +          +  E    N + Q+M+        +  AT 
Sbjct: 185 KGSKIRIVPISKNMNQILEVYISKFFSDIKLKNEYLIKNKNNQQMSRDGIEYIVQKYATI 244

Query: 280 AGVN-------KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
              N          H  R   A            +    G + +     Y +   R +
Sbjct: 245 LKNNDPSFPSKVHPHMFRHSKAMHMLAVDIPIVYIRDFLGHEDISTTMIYARADSRKK 302


>gi|189462830|ref|ZP_03011615.1| hypothetical protein BACCOP_03529 [Bacteroides coprocola DSM 17136]
 gi|189430446|gb|EDU99430.1| hypothetical protein BACCOP_03529 [Bacteroides coprocola DSM 17136]
          Length = 406

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/250 (14%), Positives = 85/250 (34%), Gaps = 29/250 (11%)

Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYV--AINPCLSVERPKRKTEGI-RP 173
           +     + S+ +  ++      ++R  F  A+  + V    NP +  +     T+ I R 
Sbjct: 158 RKFEDWMRSKGNKDTTLSYQFRTLRAAFNKAIEAKIVAREKNPFIKYKLSHFNTKTIKRA 217

Query: 174 WTKEDMQQFKSFWSEG-------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226
            +K+D+ +  +    G       +    +F   L  G+   D      +++ +     + 
Sbjct: 218 LSKKDIMKIINANCIGKSELRQLTHDLFSFS-YLCGGISFVDIANLTPKNIVDGRLIYQR 276

Query: 227 QKTGTIITVELPDGFMKLLAM-TPIGKETFFIN---NDKQKMNATQFSIWFKAKA----- 277
           QKT   I + L D   K++       K+  ++    + K+ +   Q S            
Sbjct: 277 QKTHGNINLPLSDKAQKIIDKYIDYQKQAIYLFPILHGKKHITPMQKSNRVHKVCHQINQ 336

Query: 278 ------TKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
                  +  +    + +  R   ATI   +G     +    G + +   + Y    D  
Sbjct: 337 ELKIFAKELNIKSEVTTYVARHSFATILKKSGVNIGIISEALGHQDIKTTQIYLSRFDNE 396

Query: 330 RLGIKNSRRI 339
           ++  +  + +
Sbjct: 397 QV-DEAMKNL 405


>gi|313906110|ref|ZP_07839460.1| integrase family protein [Eubacterium cellulosolvens 6]
 gi|313469050|gb|EFR64402.1| integrase family protein [Eubacterium cellulosolvens 6]
          Length = 316

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 46/285 (16%), Positives = 88/285 (30%), Gaps = 44/285 (15%)

Query: 87  LAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVE---SRKHTPSS--AIQFLTSM 140
           L  ++ + ++S + + I    GD    +I+   ++  +    +    PS+      +  M
Sbjct: 19  LKHSTYVRYQSIYRRRIQPVIGDCLPTEISQIMVKRCLGLGGNAGPRPSASYVNSTMNIM 78

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-GSQPRLAFEFL 199
           R +  +A        N    + +PK   + I  +T E+ ++      +     +      
Sbjct: 79  RQILLYA-DPTINTENLMHGIIKPKTVQKAIEVFTAEEQRRLLCVLEQQPDTYKTGILIC 137

Query: 200 LYSGLRCSDSCRAGVQHL--QNNIFSIK--------------------TQKT-------- 229
           L +G R  + C      +  +N    I                     T KT        
Sbjct: 138 LLTGCRLGEICALKTDDISMENETIHIHSTVQRIQRPAESLSDEDMLGTSKTMLLVTAPK 197

Query: 230 --GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSA 286
              +   + LPD     L   P+  E     N  + M    +   F      A +  K+ 
Sbjct: 198 SQKSDRIIPLPDYLYSFLLEHPLYGEYVV--NSTKLMEPRTYENKFATYQKMAKIKPKNF 255

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIR 330
           H +R   AT     G     L    G  +V      Y    + ++
Sbjct: 256 HTLRHTFATNCVAGGMDPKVLSELLGHSSVTITLNRYVHPTNEMK 300


>gi|260597508|ref|YP_003210079.1| Prophage lambda integrase [Cronobacter turicensis z3032]
 gi|260216685|emb|CBA30042.1| Prophage lambda integrase [Cronobacter turicensis z3032]
          Length = 382

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 48/293 (16%), Positives = 88/293 (30%), Gaps = 36/293 (12%)

Query: 61  INSPRKKPTTLKWLISEYRKSAHWG----SLAVNSRISFESYFDQIIRKSGDFDYRKITT 116
             S  K  TT+ WL   Y K          +  N+          +  + G      +  
Sbjct: 75  ATSKGKAITTITWL-ERYWKIQEERLKSGDIRQNTFKQKAKPVSLLRERVGMKLISAVDV 133

Query: 117 KHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAI--NPCLSVERPKRKTEGIR 172
           + I   ++       P  A    + +  +FK A     V    NP L+ ++P+R+    R
Sbjct: 134 RDIAQILDDYIAAGQPRMAQVIRSVLIDIFKEAQHFGEVPPGYNPALATKQPRRRINRQR 193

Query: 173 PWTKEDMQQFKSFWSE-GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
             + E+ Q+              A    L +G R  D        + ++   +  +KTG+
Sbjct: 194 -LSLEEWQKIFDIADATHRYMGNAMLLALVTGQRLGDISNMKFADIWDDHLHVVQEKTGS 252

Query: 232 IITVELPDGFMK--------LLAMTPIGKETFFIN--------NDKQKMNATQFSIWFKA 275
            + + L              +          F I+            ++ +   ++ F  
Sbjct: 253 KLAIPLSLRLDAIGWNLRDVIARCRDYAVSPFLIHFFRATSMAERGAQVKSNTITMNFSK 312

Query: 276 KATKA------GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
              KA      G   + H  R  +  +  D G          G K+  Q   Y
Sbjct: 313 ARDKAEIHWGDGTPATFHEQRSLAERLYGDQGVDT---QRLLGHKSPQQTARY 362


>gi|257437573|ref|ZP_05613328.1| prophage LambdaCh01, site-specific recombinase, phage integrase
           family [Faecalibacterium prausnitzii A2-165]
 gi|257199880|gb|EEU98164.1| prophage LambdaCh01, site-specific recombinase, phage integrase
           family [Faecalibacterium prausnitzii A2-165]
 gi|295109631|emb|CBL23584.1| Site-specific recombinase XerD [Ruminococcus obeum A2-162]
          Length = 434

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/294 (12%), Positives = 85/294 (28%), Gaps = 49/294 (16%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTK---HIRS 121
           ++  T+   ++++ +S    +L  ++   ++    + I    G     ++T      +  
Sbjct: 76  QRKQTVASYLNDWVESYARVNLRPSTYDGYKKTIANYINPYIGGVALNQLTPAMVDKMFQ 135

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS-VERPKRKTEGIRPWTKEDMQ 180
            +  +   PS+A      + V    A +  Y+  N     + +  +  +   P+T E ++
Sbjct: 136 QIIDKGLKPSTAAGAKRVLSVALSHARKYRYIETNAAKDTLTKFGKSDKTPDPYTPEQVK 195

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
                  EG+   +        G+R S+      +++     +         +  ++P  
Sbjct: 196 ALMQRV-EGTVWEMPVILGGLYGMRRSEILGLRWRNVDLENNTFDVS---EQLPFKVPPK 251

Query: 241 FMKLLAMTPIG--KETFFINNDKQKMNATQF--SIWFKAKATKAGVNK------------ 284
              +  M P      T  I    +     QF      + +A K G               
Sbjct: 252 TKVIEEMAPPKSNGRTLPITELARPFFLKQFAMQEAQREQAEKDGKPYYDNDLVVAKPDG 311

Query: 285 ------------------------SAHGVRKFSATISADAGATAHELMATYGWK 314
                                     H +R  +AT         + +    G  
Sbjct: 312 SPISASWVSSQFGKLLEDLDMPHIRFHDLRHTAATNMHQLTGDFYTVGEVLGHT 365


>gi|154484436|ref|ZP_02026884.1| hypothetical protein EUBVEN_02149 [Eubacterium ventriosum ATCC
           27560]
 gi|149734913|gb|EDM50830.1| hypothetical protein EUBVEN_02149 [Eubacterium ventriosum ATCC
           27560]
          Length = 426

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 63/403 (15%), Positives = 120/403 (29%), Gaps = 88/403 (21%)

Query: 6   RLPPFVTKERTRHGKIIYYFRKGHGRR---IRLPYPHESTFIPA---YMSALTGSTPKRE 59
           R P    K +   G+++   RKG   R    R  Y ++ TF      Y   L     + +
Sbjct: 10  RRPIMEKKRKDSRGRVL---RKGEAFREKEGRYSYEYKDTFGNRKTIYSVDLLKLREREK 66

Query: 60  YINSP--------RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFD 110
            I                TL +L   Y  +    +L  N++++++  +D  +    G   
Sbjct: 67  QIERDISDGLNMYVAGKATLNYLFERYMDTK--YNLRENTKVNYKYMYDNYVRNTIGKRL 124

Query: 111 YRKITTKH----IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV----E 162
              I         +S +  +    ++     T +  +F  AVR + +  NP   V    +
Sbjct: 125 IADIKYSDIVYFYKSLITEKGLELNTVDTIHTVIHPVFSMAVRDDVIRKNPASGVLADIK 184

Query: 163 RPKRKTEGI-RPWTKEDMQQFKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218
           +   K +GI    T E  + F  +  E          F  LL +G R  +      + + 
Sbjct: 185 KESGKNKGIRHALTIEQQRVFMKYMIEEEQFNHWIPIFTILLGTGCRVGEFIGLRWEDVD 244

Query: 219 --------------------NNI---FSIKTQKTGTII-TVELPDGFMKLLAM------- 247
                               +     ++I   KT   I  + + D    +          
Sbjct: 245 FKQKVISINHSIAYVCYGKEDGRKSHYAISLPKTEAGIRYIPMTDEVYDVFKAEYYRQQE 304

Query: 248 ------TPIGKETFFINND-KQKMNATQFSIWFKAKAT--------KAGVNK-------- 284
                 +  G   F   N   +  N    +   K  +          A   K        
Sbjct: 305 NGFSQFSIEGMSGFIFTNRCGRIYNQQTLNKGLKRISENYNQKELIDAKKQKREPIILPH 364

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKG 325
            + H +R   AT   ++ +    +    G   ++   + Y + 
Sbjct: 365 FTCHQLRHTFATRLCESTSNLKAIQDIMGHANIETTMDIYAEA 407


>gi|238784932|ref|ZP_04628931.1| Integrase [Yersinia bercovieri ATCC 43970]
 gi|238714147|gb|EEQ06160.1| Integrase [Yersinia bercovieri ATCC 43970]
          Length = 342

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/265 (13%), Positives = 71/265 (26%), Gaps = 34/265 (12%)

Query: 84  WGSLAVNSRISFESY---FDQIIRKSGDFDYRKITTKHIRSGVESR-------------K 127
           W +L   S  + E      + I+   G+     ++ K        R              
Sbjct: 68  WYNLHGRSLEAGEKIYKKLELIVAALGNPPAHSLSGKDFAHYRSKRLSGEIYFSEKWKKG 127

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             P +     + +  +F    R   +   NP  ++ +     + +   T E ++   +  
Sbjct: 128 AKPVTVNLEQSFLSGMFSELARLGEWNLPNPLDNLRKYAVAEKEMAWLTHEQIKTLLAAC 187

Query: 187 SEGSQPRLAF-EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
           S G        +  L +G R +++ +     +  N  +    K     +V +       L
Sbjct: 188 SLGRADLPMVVKVCLSTGARWNEAEKLTRSQVSPNKITFIRTKGKKNRSVPISKELHDEL 247

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA----HGVRKFSATISADAG 301
                 +            +   F   F A      +        H +R   A     +G
Sbjct: 248 VALEGDRL----------FSECYF--RFMAAINTTDIKLPTGQLTHVLRHTFAAHFMMSG 295

Query: 302 ATAHELMATYGWKTVDQAETYTKGA 326
                L    G   +     Y   A
Sbjct: 296 GNILVLQRILGHSDIQMTMRYAHFA 320


>gi|320006288|gb|ADW01317.1| phage integrase [Lactobacillus phage Sha1]
          Length = 378

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 47/372 (12%), Positives = 104/372 (27%), Gaps = 49/372 (13%)

Query: 14  ERTRHGK-IIYYFRKGHG-----RRIRLPYPHESTFIPAYM-SALTGSTPKREYINSPRK 66
           +R + G  +   +R   G     R+          F  ++  S  +G   K+  I     
Sbjct: 5   KRVKKGYLVRISYRDHAGNYLSKRKTFTRKRDAEEFANSFEVSKFSGELEKKPSIE---- 60

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
                      + ++    +LA  +   +E    +I           IT K  +  +   
Sbjct: 61  ----FSKYFYSWYETYRKPNLAYITTRRYELVHTEIENYFAHARIADITRKDYQKFINQY 116

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS------VERPKRKTEGIRPWTKEDMQ 180
               + A   +  +  L K  V       +          +   K ++  I      +++
Sbjct: 117 GK--NHAKDSVKKLHNLIKACVGNAVFEKDVETDFTYNVIITYDKNRSLKIDYLNLAEIK 174

Query: 181 QFKSFWSEGSQPRL----AFEFLLYSGLRCSDSCRAGVQHLQ--------------NNIF 222
           Q  ++      PR          +++G R  +      + +                   
Sbjct: 175 QLTAYVQNHLNPRYTSQYMIMTAIFTGARLGEIMALTWKDINFTFNTISINKSWNYVEGG 234

Query: 223 SIKTQKT-GTIITVELPDGFMKLLAMTPIG-KETFFINNDKQKMNATQFSIWFKAKATKA 280
             K  KT  +  T+ +   F+  L    +  +E  F N       +   +   ++     
Sbjct: 235 GFKPTKTESSNRTIRVNKQFLDSLKALKVNNREMVFENVSHDIPTSNGVNKVLRSDLKAL 294

Query: 281 GVNKS---AHGVRKFSATISADAGATAHELMATYGWKTV-DQAETYTKGAD--RIRLGIK 334
           G+ +     H +R              + +    G   +   +  Y    D  + R   K
Sbjct: 295 GITRKGFHFHSLRHSHVAFLLSQNIDLYIISKRLGHSDIGTTSRIYAYLIDEYKARSDEK 354

Query: 335 NSRRISSVVDSD 346
            S  +  + +S 
Sbjct: 355 ISGSLDKLFNSP 366


>gi|288926827|ref|ZP_06420735.1| integrase [Prevotella buccae D17]
 gi|288336399|gb|EFC74777.1| integrase [Prevotella buccae D17]
          Length = 407

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/225 (15%), Positives = 78/225 (34%), Gaps = 16/225 (7%)

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQQFKSF--- 185
            ++A + +   + +     +   +  +P  +     +    G    T E++ +  +    
Sbjct: 181 RNTATKTMKIFKTITILGRKLGVLHHDPFANYHFHLELVDRGF--LTDEEILKIVNKKLT 238

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDGF 241
               S  R  F F  ++GL   D      +HL           K QKT     + L D  
Sbjct: 239 IPRLSLVRDIFIFSCFTGLSYIDVANLTPEHLVNMDDKQWIMTKRQKTNVESNILLLDIP 298

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
            +++A      +T+  +     ++  + + + K  A   G+ K  + H  R   AT+S  
Sbjct: 299 KQIIA--KYSNKTYRDSKLFPVLSNQKMNAYLKEIADICGIGKNLTFHMARHTFATMSLS 356

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
            G     +    G   +   + Y +  ++      +   ++  +D
Sbjct: 357 KGVPMESVSKMLGHTNLKTTQIYARITNKK--IEHDMEELAGKLD 399


>gi|257091155|ref|ZP_05585516.1| predicted protein [Enterococcus faecalis CH188]
 gi|312902620|ref|ZP_07761825.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0635]
 gi|256999967|gb|EEU86487.1| predicted protein [Enterococcus faecalis CH188]
 gi|310633958|gb|EFQ17241.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0635]
 gi|315163287|gb|EFU07304.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0645]
 gi|315578979|gb|EFU91170.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0630]
          Length = 372

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 50/354 (14%), Positives = 110/354 (31%), Gaps = 50/354 (14%)

Query: 14  ERTRHGKIIYYFRKGH----GRRIRLPYPHESTFIPAYMSALTGSTPKREYIN--SPRKK 67
            + +     Y+         G+RI         F   + +A        +++     +++
Sbjct: 8   YKDKKTGKYYFVASLGFDLKGKRI-------QKFKRGFKTAKEAKKAYNQFMIDYQEKRE 60

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127
             T      EY K  +   +   +  +     +  +    +     I T  ++  +    
Sbjct: 61  KITFGNFYEEYYKCWYKNHVKEGTFKTNTGIIENHLSIFNEVQINAIETVDLQKLINYLS 120

Query: 128 H----------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
                      +P      + +++ +F+ A    ++  +    V R + + + +  WT +
Sbjct: 121 GEYKTKTGESLSPEYINLIICNIQSVFERAFIFGFIDEDISKKVSRVRVEEKEVNIWTID 180

Query: 178 DMQQFKSFWSEGSQ----PRLAFEFLLYSGLRCSDSCRAGVQHLQNN------------- 220
           DMQ+      E        ++ F FL  +GLR  ++     + +  +             
Sbjct: 181 DMQKVMLLSDESDSLLFFKKMFFRFLFMTGLRLGEALALNWEDVDFDSKVVYINKTMLVK 240

Query: 221 ---IFSIKTQKTGTII-TVELPDGFMKLLAMTPIGKET----FFINNDKQKMNATQFSIW 272
               F   T KT + I TV L D  ++L  +    +         + D   +  +    W
Sbjct: 241 NKREFRTTTPKTKSSIRTVSLDDETLRLFEIWREQQSPLKINLIFSIDGGTLAKSTTHGW 300

Query: 273 FKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
            K     A V     H +R   A++       +  +    G   +    E Y  
Sbjct: 301 LKKICDLADVPVIKIHALRHSHASMLIALKEDSLVIKERLGHSRITTTLEKYGH 354


>gi|330892545|gb|EGH25206.1| site-specific recombinase, resolvase family protein [Pseudomonas
           syringae pv. mori str. 301020]
          Length = 200

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/196 (18%), Positives = 66/196 (33%), Gaps = 19/196 (9%)

Query: 140 MRVLFKWAVRQEYVA-INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEF 198
           +   FK+A R   +   NP   +  PK      +  T  +++   +  S      L  E 
Sbjct: 2   LSRFFKYAKRGLLIDIPNPVCDITLPKPDKSSDKVVTAGELRLILNELSP--TMALIAEL 59

Query: 199 LLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTI------ITVELPDGFMKLLAMTPI 250
              + +R S+  +  V   HL+  I  +   K GT         ++L +   +L     I
Sbjct: 60  AYETAMRRSEILKLTVNCLHLEQRIVDVVDGKNGTRSVPLTLRAIDLLEEAQRLAVAEHI 119

Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELM 308
            +E  F       +     S   +   T A ++     H +R    T  A  G    ++M
Sbjct: 120 PRERLF------SVAPHSVSQAIRRARTAANLDSNVRLHQLRHTRITNVAKRGFNNAQIM 173

Query: 309 ATYGWKTVDQAETYTK 324
              G +       Y+ 
Sbjct: 174 IVSGHRDTRSVARYSH 189


>gi|324020550|gb|EGB89769.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 117-3]
          Length = 336

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 45/307 (14%), Positives = 101/307 (32%), Gaps = 23/307 (7%)

Query: 26  RKGHGRRIRLPYPHESTFI--PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAH 83
           R   G+RIR  +  ++  +    Y  A       ++     R    TL  L+  + K  H
Sbjct: 28  RGRDGKRIRRKFERKAEALAFERYTIA----NASQKEWGGQRADRRTLTELLDIWWK-YH 82

Query: 84  WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK---HIRSGVESRKHTPSSAIQFLTSM 140
             +    ++    ++  + I   GD    ++  +     RS       + ++  + +  +
Sbjct: 83  GQNHEHGTKEF--NHLLKTISGIGDIPVSRMNKRALMDYRSMRLRDGISAATINRDMYRL 140

Query: 141 RVLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199
             +F   ++  E+   +P   +         +    K ++++  +  +      L     
Sbjct: 141 SGMFTKLIQLDEFSGQHPIHGLPPLTEANPEMTFLEKAEIEKLLNVLT--GDDLLVALLC 198

Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN 259
           L +G R ++        + +   +    K G   TV + +   K +      K       
Sbjct: 199 LSTGGRWTEVATLKPAQITSCRVTFLKTKNGKKRTVPISEELEKKVKEEASAKLF----- 253

Query: 260 DKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
              K++  +F    +        N++ H +R   A+     G     L    G  ++ Q 
Sbjct: 254 ---KVDYEKFCGILRRVKPDIPPNQATHILRHTFASHFMMNGGNIIALQQILGHASIQQT 310

Query: 320 ETYTKGA 326
            TY   A
Sbjct: 311 MTYAHLA 317


>gi|317010894|gb|ADU84641.1| XerCD family integrase/recombinase [Helicobacter pylori
           SouthAfrica7]
          Length = 355

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 26/174 (14%), Positives = 64/174 (36%), Gaps = 15/174 (8%)

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIIT 234
           E + + +      ++ RL  + ++++G+R +++ +  ++    +N  ++I  +  G    
Sbjct: 178 ESIDKIEMSAKVRARNRLLIKIIVFTGMRSNEALQLKIKDFTLENGCYTILIKGKGDKYR 237

Query: 235 VELPDG------FMKLL---AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284
             +           + L    + P+  +  F N     +         +     AG+ + 
Sbjct: 238 AVMLKAFHIESLLKEWLIERELYPVKNDLLFCNQKGMALTQAYLYRQVERIINFAGLRRE 297

Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
              AH +R   AT+          +    G  +++ +  YT   D+ RL    S
Sbjct: 298 KNGAHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTH-FDKQRLEEAAS 350


>gi|311071149|ref|YP_003976072.1| putative phage integrase [Bacillus atrophaeus 1942]
 gi|310871666|gb|ADP35141.1| putative phage integrase [Bacillus atrophaeus 1942]
          Length = 368

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 41/289 (14%), Positives = 84/289 (29%), Gaps = 40/289 (13%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI---TTKHIRSG 122
            K  +   L+S Y +            I   +    II    +   +K+     +  +  
Sbjct: 58  HKEISFSTLVSIYLEQCKLHHKPNYYNIEKYTIEKHIIPHFKNCIVKKVTHNEIQDFQKS 117

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           +  +     +    +  +  +F   + ++ +  NPC  V+      + ++ WT +   QF
Sbjct: 118 LIDKGLENKTINNTMIILSKIFDIGIVEDVLIKNPCAKVKNLSVVKKQMKFWTPD---QF 174

Query: 183 KSFWSEGSQPRLAFEFL----LYSGLRCSDSCRAGVQHLQ---------------NNIFS 223
           K F S   +    F+        +G+R  +      + L                N  + 
Sbjct: 175 KEFISLIEKDEFIFKVFYTTDYLTGMRLGEILALQWKDLDKFRREINVYKALTYINQEYI 234

Query: 224 IKTQKTGTIIT--------VELPDGFMKL------LAMTPIGKETFFINNDKQKMNATQF 269
           I   KT   +         + L D + +              +ET+      +      F
Sbjct: 235 ITPPKTKNSVRRISINSKLITLLDEWRQHQKEIFDELGIHQSEETYMFQYKDRPPTKDIF 294

Query: 270 SIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVD 317
           S   K    +  V     H +R     +    G     +    G  +V 
Sbjct: 295 SRKIKQICQRGNVEPIRFHDLRHSHVALLIHQGEDYLVIKERLGHSSVS 343


>gi|302384655|ref|YP_003820477.1| integrase family protein [Clostridium saccharolyticum WM1]
 gi|302195283|gb|ADL02854.1| integrase family protein [Clostridium saccharolyticum WM1]
          Length = 386

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 50/366 (13%), Positives = 118/366 (32%), Gaps = 44/366 (12%)

Query: 17  RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76
           R G+ IY  + G      L  P    ++ A          K       ++ P+       
Sbjct: 3   RRGENIYKRKDGRWEGRVLKSPGRYQYVYARTYKEVKEKKKLLQEGITKELPSNTHSRCD 62

Query: 77  EYRKSAHW------GSLAVNSRISFES-YFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
             ++   W      G +  ++  S+       +I    +    +I+ +          + 
Sbjct: 63  AAKEFTAWLHGDLTGRVKPSTYESYYRCIVGYVIPFYQEKGNEQISLQTTSDFSCRINNH 122

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAIN-----PCLSVERPKRKTEGIRPWTKEDMQQFKS 184
              ++ +   +  ++K A+ +E +  N        +++ P++ +  ++ ++ ++ +  + 
Sbjct: 123 EGVSVSYRRKILTIYKTAL-REIMKRNKECDSILNAIQMPRKISAEVQAFSVKEQRMLER 181

Query: 185 FWSEGSQPR-LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT--------- 234
              +    R L      Y+G+R  + C    + +     ++   +T + I          
Sbjct: 182 TIIQSPDKRCLGILLCFYTGIRLGEVCGLKWEDIDFEAGTMVVTRTVSRIKNFDETKKKT 241

Query: 235 ---------------VELPDGFMKLLAMTP---IGKETFFINNDKQKMNATQFSIWFKAK 276
                          + LPD  ++L             F + N +  M+  ++   F+  
Sbjct: 242 VLYIGKPKSIHSVRKIPLPDFLLELARELKMERSDNNHFILTNSEYPMDPRKYQKLFQKL 301

Query: 277 ATKAGVNKS-AHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGA-DRIRLGI 333
            T A V K   H +R   AT + + G     L    G   V      Y     ++ +  I
Sbjct: 302 LTHASVKKRKFHAIRHTFATRALELGIDIKTLSEILGHSNVSITLNIYAHSMYEQKKKAI 361

Query: 334 KNSRRI 339
                +
Sbjct: 362 GKLNAM 367


>gi|295105622|emb|CBL03166.1| Site-specific recombinase XerD [Faecalibacterium prausnitzii SL3/3]
          Length = 358

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 46/291 (15%), Positives = 88/291 (30%), Gaps = 45/291 (15%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR-- 126
           T +  +  Y        L  N+    E     +I+    +    +I  + + +       
Sbjct: 57  TFEAFVEIYITDKK-KRLRENTWSVKEHIIRTKILPYFKEKRLSEIKPRDVIAWQNEMLN 115

Query: 127 -------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKED 178
                   ++P+        +  +   AVR   +  N   +       K + +  WTKE+
Sbjct: 116 YRDKNGKAYSPTYLKTLHGQLSAILNHAVRFYGLKSNAAATAGCMGSEKHKEMLFWTKEE 175

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF---------------S 223
             +F     +  Q   AFE L + G+R  +           +                  
Sbjct: 176 YLKFAEVMMDKPQSYYAFEVLYWCGIREGELLALTPADFDLDKGLLSITKSYQRLKGRDV 235

Query: 224 IKTQKTGTIITV---------ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274
           I   KT   + V         E+ D    L  + P   +  F       +  +       
Sbjct: 236 ITDPKTPKSVRVIQMPQFLTDEIRDYLKSLYKVQP--DQRIFE------VTKSYLHHEMD 287

Query: 275 AKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             A +AGV +   H +R    ++  + G +A  +    G ++VD    Y  
Sbjct: 288 RGAKEAGVKRIRIHDLRHSHVSLLIEMGFSALAIADRVGHESVDITYKYAH 338


>gi|255011845|ref|ZP_05283971.1| putative integrase [Bacteroides fragilis 3_1_12]
          Length = 433

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 57/304 (18%), Positives = 109/304 (35%), Gaps = 49/304 (16%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYR--KITTKH---IRSGVESRKHTPS 131
            ++KS     +A   R +  S    + +  G    +  +I  +     +  +     + +
Sbjct: 142 AWKKSMKKDGIAAAYRSTRSS----LAKFVGSKQVKMSQINQRFVTCYKDFLSCNGVSEN 197

Query: 132 SAIQFLTSMRVLFKWAVRQEYVA----------INPCLSVERPKRKTEGIRPWTKEDMQQ 181
           +   ++ + R L+  AV+  +V             PC +V+R   K + +R  T+ D+  
Sbjct: 198 TEAYYMRNFRTLYNLAVKDGFVPKCTYPFKDICTKPCKTVKRALDKEQMLR-LTQSDLGA 256

Query: 182 FKSFWSEGSQPRLAFEFLLYS-GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
                 E  Q R  F F  Y+ G+   D      +++  N  S +  K+   I + +   
Sbjct: 257 ----NPELMQSRALFLFGFYAQGMAFVDIIFLRWKNICGNSISYRRHKSKQTIQITITPQ 312

Query: 241 FMKLLAMTPIGKE----TFFI------------NNDKQKMNATQFSIW-FKAKATKAGVN 283
              +L    I KE      F             N  +Q   A   +    K  + K G+ 
Sbjct: 313 IQAILDEYGINKENVDGYIFPIIQPVINPQTDKNEYEQYRVALGRTNRHLKTISGKLGIA 372

Query: 284 --KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
              + +  R   AT++ + GA    +    G    +    Y K  DR      N +RI+ 
Sbjct: 373 PSLTTYTARHTWATLAREYGAPVATISTGLGHTKEEMTLVYLKELDR-----SNLKRING 427

Query: 342 VVDS 345
           +++S
Sbjct: 428 LINS 431


>gi|224282772|ref|ZP_03646094.1| phage integrase [Bifidobacterium bifidum NCIMB 41171]
          Length = 436

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 44/321 (13%), Positives = 89/321 (27%), Gaps = 50/321 (15%)

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSG--- 122
           KP T+      +        L   +  ++ S  ++ +    G     ++   H R     
Sbjct: 113 KPPTVAEWCDHWLNDICKPHLKPRTWGTYASVIERNVKPAIGAVRLDELKPAHFRRMERY 172

Query: 123 -VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
            +E +  +  +A     ++    + AV +  +  NP +    P+   +     T E    
Sbjct: 173 VMEEQGKSSGTAGSAWRTLHKALEDAVLEGVIERNPAVKGTAPRVALKERAALTPEQAAD 232

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----------------------- 218
             +  ++ +  RL +     +G+R  +        L+                       
Sbjct: 233 LIAAETDDTW-RLMWMLAFMTGMRQGERLGLTEDELRRDGDRLIILVEWQAQHLTKREVE 291

Query: 219 ------------NNIFSIKTQKTGTIITVELPDGFMKLLAM-----TPIGKETFFINNDK 261
                       N ++  + +       + LP+     L          G    F ++  
Sbjct: 292 GLPKGVECTPLGNGMYRTRPKTEKGRRAIPLPEALADQLLAHIERHGVNGDGLVFHDDRG 351

Query: 262 QKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
             +        +     + G+      H  R  +ATI    G       A  G   V   
Sbjct: 352 LPLTGCVERRRWYRALDRVGLGHEYVPHSARHTTATILNRLGLDDVTRTAIMGHSRVSTT 411

Query: 320 -ETYTK-GADRIRLGIKNSRR 338
            E YT    DR+        R
Sbjct: 412 NEIYTHVELDRLVAATDGVER 432


>gi|167725809|ref|ZP_02409045.1| Phage integrase family protein [Burkholderia pseudomallei DM98]
          Length = 246

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/225 (13%), Positives = 56/225 (24%), Gaps = 38/225 (16%)

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK---------------- 183
           +   F+W V +     NPC  V+  K K       T       +                
Sbjct: 9   LSGFFQWCVDKGKRDTNPCREVKLKKPKPRQTYI-TDAHFSAIRNAMLETTYKLNSGTDS 67

Query: 184 -----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKT----GTI 232
                +    G   +   +    +  R ++        +     +      KT    G  
Sbjct: 68  EKEVVADVPTGPMMQCIIDLCYLTAQRSTEIRTLKWSDVDREAGVIHFVPSKTADSSGVR 127

Query: 233 ITVELPDGFMKLLA-------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--- 282
           +  ++     ++L           I           +   A      +K  A +A +   
Sbjct: 128 VDFKITPEINEVLLRIQQIDGRPTISDMPVVHTRKGKMYAANTILKAWKTAAKRANLSHF 187

Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
             +   +R  + T    AG     L            ETY K  +
Sbjct: 188 GYTVKDIRAKALTDGERAGYDVKALQIAAAHTDEKMTETYIKKRN 232


>gi|149924447|ref|ZP_01912810.1| Phage integrase [Plesiocystis pacifica SIR-1]
 gi|149814686|gb|EDM74262.1| Phage integrase [Plesiocystis pacifica SIR-1]
          Length = 377

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 58/370 (15%), Positives = 114/370 (30%), Gaps = 41/370 (11%)

Query: 13  KERTRHGK--IIYYFRK------GHGRRIRLPYP-HESTFIPAYMSALTGS--TPKREYI 61
           K R + G+    +          G  + IR   P         Y   L     + +    
Sbjct: 7   KWRDKQGRQHERWMVHIEHTWPDGRKQTIRKVSPVQTKRGAEQYERELRKQLVSGEILKG 66

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIR 120
            + R+K  TLK    E+       +         +S     ++   G      I  + I 
Sbjct: 67  GAKRRKVPTLKEFSEEFLAYQATMN-KPGVIDWKKSILRTHLLPALGRRRLDAIDERVID 125

Query: 121 SGVESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
           +   S+      P +    L  +  + + A R + ++  P   +  PK           +
Sbjct: 126 AFKVSQSQLELAPKTVNDHLKLLGRMLRVAKRWKLISEVP--EIVLPKLAAPSFDFLDFK 183

Query: 178 DMQQFK----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGV-QHLQNNIFSIKTQ----- 227
           + + F     ++   G    +     + +GLR  +       + L  +   ++ Q     
Sbjct: 184 EAKLFLEGAWAYELYGGMWPIYMVVAMRTGLRLGEMKSLRWREDLDLDRGRVRVQRSHSD 243

Query: 228 -------KTGTIITVELPDGFMKLLA---MTPIGKETFFINNDKQKMNATQFSIWFKAKA 277
                  K G    V L    ++ L        G+  F   +  + +   Q +   KA A
Sbjct: 244 KHGFASPKNGKSRDVPLTLDALEALRSWRGQARGELVFSQLSSGEPLRHRQPNNAVKAIA 303

Query: 278 TKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
              G+ +   H +R   A+ +   G    ++    G  ++     Y   AD   +G    
Sbjct: 304 KSVGLRQIHTHVLRHTFASHAVMRGIPMRQVQEWLGHSSIVVTMRYAHLAD--GMGDAMI 361

Query: 337 RRISSVVDSD 346
           +R+    D D
Sbjct: 362 QRLDPSSDGD 371


>gi|210610558|ref|ZP_03288484.1| hypothetical protein CLONEX_00674 [Clostridium nexile DSM 1787]
 gi|210152417|gb|EEA83423.1| hypothetical protein CLONEX_00674 [Clostridium nexile DSM 1787]
          Length = 425

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 54/323 (16%), Positives = 99/323 (30%), Gaps = 53/323 (16%)

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRSGVES 125
           K  T+  L  +Y +    G++   ++ S +     +   K G      +     +     
Sbjct: 85  KKMTVCQLYEKYTR--QRGNVRKGTQKSRQQLMKLLSEDKLGAASIDSVKLSDAKEWALR 142

Query: 126 RKHTPSSAIQF---LTSMRVLFKWAVRQEYVAINPCL-SV-ERPKRKTEGIRPWT---KE 177
            +    +         S++ +F  AV+ + +  NP    + E     T    P T   + 
Sbjct: 143 MQEKGVAYNTICNSKRSLKAIFYMAVQDDCLRKNPFDFQINEVINDDTVPKVPLTPTQEN 202

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----------------NNI 221
           ++  F       ++       LL +GLR S+ C      L                  + 
Sbjct: 203 ELLDFMQNDPVYAKYYDEVVILLETGLRISELCGLTPADLNFEKRFVNVDHQLLRSTEDG 262

Query: 222 FSIKTQKTGTIIT-VELP----DGFMKLLAMTPIG--------KETFFINNDKQKMNATQ 268
           + I+  KT +    V +     + F ++L     G        K+  F+N D     A  
Sbjct: 263 YYIEAPKTESGFRQVPMSAAAYEAFERVLKKRRDGRCIEVDGYKDFLFLNRDGLPKTAVN 322

Query: 269 FSIWFKAKATKAGVNK----------SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           +   FK        NK          + H +R    T  A+AG     L    G   +  
Sbjct: 323 YDAMFK--CLAKKYNKCHKEPLPDVMTPHTMRHTFCTRMANAGMNPKALQYIMGHANIVM 380

Query: 319 AETYTKGADRIRLGIKNSRRISS 341
              Y   A       +   R+ +
Sbjct: 381 TLNYYAHATFHS-AQEEMERLQA 402


>gi|189467265|ref|ZP_03016050.1| hypothetical protein BACINT_03651 [Bacteroides intestinalis DSM
           17393]
 gi|189435529|gb|EDV04514.1| hypothetical protein BACINT_03651 [Bacteroides intestinalis DSM
           17393]
          Length = 337

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 41/238 (17%), Positives = 87/238 (36%), Gaps = 21/238 (8%)

Query: 111 YRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP-KRKTE 169
           +     K     +  ++ +P++   ++ +++ ++   +       NP L  +   K ++ 
Sbjct: 65  FTPERLKEYEDWLAGQQSSPNTISTYMRTLQAVYNRWMSPGIEGYNPVLFKDVYTKVESR 124

Query: 170 GIRPWTKEDMQQFKS----FWSEGSQPRLAFEFLLYS--GLRCSDSCRAGVQHLQNNIFS 223
             R  T E M+Q ++      +   Q  L +  L++   G+   D        L+N   +
Sbjct: 125 TKRALTAEQMEQLRNTDFSVLTLRQQQVLTYFLLMFMLRGMPFIDLAHLRKSDLRNRRIT 184

Query: 224 IKTQKTGTIITVELPDGFMKLLA--MTPIGKETFFINNDK-------QKMNATQFSIWFK 274
            +  KTG ++ V++P   M+LL         E  F                      + +
Sbjct: 185 YRRHKTGKLMVVDVPPDAMRLLQKYRDKTDSEYLFPLLHGGLFMEEHHHRYQETLRHFNR 244

Query: 275 AKATKA-----GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
             A        GV+ S++  R   AT++  +G     +  + G  ++    TY K  D
Sbjct: 245 ELARLMKQLLPGVSVSSYTARHTWATLAYHSGVPVGLISQSLGHSSIRVTMTYLKPFD 302


>gi|112943701|gb|ABI26319.1| phage integrase [Lactobacillus reuteri]
          Length = 402

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 59/356 (16%), Positives = 117/356 (32%), Gaps = 42/356 (11%)

Query: 9   PFVTKERTRHGKIIYYFRKGH----GRRIRLPYPHEST---FIPAYMSALTGSTPKREYI 61
            +        G   Y    GH    G+RI+     ++    F  A+ +       K EY 
Sbjct: 5   KYPDVYVDNKGHYYYLVELGHDLLTGKRIQKKSRRDANNNRFRSAHDAYKECLRIKNEYQ 64

Query: 62  NSPRKKPTTL--KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119
           +        L     +  Y   ++   +  ++  S +S F  +I+  G +  R I +   
Sbjct: 65  SQNGYANYGLLYSDFMKNYYIPSYQSDVERSTFKSRQSTFKHLIKWFGQYKLRSIRSIDC 124

Query: 120 RSGV----ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
                       ++   +    +  R    +AVR +++A NP    +   +    +  WT
Sbjct: 125 EKFRVYLLNKSGYSQGFSSMVYSMFRNTLDYAVRMDFLAKNPSRKTKAINKGKSNVAFWT 184

Query: 176 KEDMQQFKSF-WSEGSQPRLAFEFLLY---SGLRCSDSCRAGVQHLQNNIFSIKTQKT-- 229
           K + ++  S  +++     + F  L      G+R S+        +      ++  KT  
Sbjct: 185 KSEFEKVLSVIYTKDYYQHMCFTILYLYFTCGMRVSEGLALTYDDVDYKRHRLRIHKTLD 244

Query: 230 ----------------GTIITVELPDGFMKLLAMTPIGKE-----TFFINNDKQKMNATQ 268
                             I T+ L +  +++L      ++      F ++ D   M+ T 
Sbjct: 245 MTNKEHYTIKPYTKTINGIRTISLDNDTIRVLKSWQKDQQAHGVYHFIMSYDDTPMSRTT 304

Query: 269 FSIWFKAKATKAGVN-KSAHGVRKFSATISA-DAGATAHELMATYGWKTVDQAETY 322
             +  K  A  AGV    A G+R  + +    +  A    +    G    D    Y
Sbjct: 305 IPLIIKRFAKIAGVKPIQAKGLRHSNVSYLINEFNADVLTVSRRLGHSGPDITLKY 360


>gi|330892709|gb|EGH25370.1| site-specific recombinase, resolvase family protein [Pseudomonas
           syringae pv. mori str. 301020]
          Length = 212

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 67/199 (33%), Gaps = 19/199 (9%)

Query: 137 LTSMRVLFKWAVRQEYVA-INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195
           L  +   FK+A R   +   NP   +  PK      +  T  +++   +  S      L 
Sbjct: 11  LAFLSRFFKYAKRGLLIDIPNPVCDITLPKPDKSSDKVVTAGELRLILNELSP--TMALI 68

Query: 196 FEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTI------ITVELPDGFMKLLAM 247
            E    + +R S+  +  V   HL+  I  +   K GT         ++L +   +L   
Sbjct: 69  AELAYETAMRRSEILKLTVNCLHLEQRIVDVVDGKNGTRSVPLTLRAIDLLEEAQRLAVA 128

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAH 305
             I +E  F       +     S   +   T A ++     H +R    T  A  G    
Sbjct: 129 EHIPRERLF------SVAPHSVSQAIRRARTAANLDSNVRLHQLRHTRITNVAKRGFNNA 182

Query: 306 ELMATYGWKTVDQAETYTK 324
           ++M   G +       Y+ 
Sbjct: 183 QIMIVSGHRDTRSVARYSH 201


>gi|291536935|emb|CBL10047.1| Site-specific recombinase XerD [Roseburia intestinalis M50/1]
          Length = 366

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 43/257 (16%), Positives = 81/257 (31%), Gaps = 39/257 (15%)

Query: 101 QIIRKSGDFDYRKITTKHIRSGVESR------KHTPSSAIQFLTS---MRVLFKWAVRQE 151
           +I+   G     +I  + I +              P SA         +  +F  AV   
Sbjct: 88  KILPYFGKRKIGEIEPRDIIAWQNELFAIRQPNGKPYSASYLQKIHSQLSAIFNHAVNFY 147

Query: 152 YVAINPCLSVE-RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210
           ++  NP        K +   +  WTKE+  +F     +      AFE L + GLR  +  
Sbjct: 148 HLPSNPAQKAGNMGKEEHREMLFWTKEEYLKFADVMMDKPVSYYAFEILYWCGLRMGELL 207

Query: 211 RAGVQHLQNNIFSIKTQKT----------------GTIITVELP----DGFMKLLAMT-- 248
                       +++  K+                 +  T+++P    D     L M   
Sbjct: 208 ALTPADFNFETHTLRINKSYQRLHREDVITPPKTLKSNRTIKMPQFLCDEMQDYLKMLYE 267

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHEL 307
           P   E  F       ++ +         +  +GV +   H +R    ++  + G T   +
Sbjct: 268 PKEDERIFT------ISKSYLHHEMNRGSKVSGVKRIRVHDLRHSHVSLLINMGFTVLAI 321

Query: 308 MATYGWKTVDQAETYTK 324
               G +++D    Y  
Sbjct: 322 ADRMGHESIDITYRYAH 338


>gi|288926555|ref|ZP_06420473.1| integrase [Prevotella buccae D17]
 gi|288336697|gb|EFC75065.1| integrase [Prevotella buccae D17]
          Length = 409

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 66/201 (32%), Gaps = 23/201 (11%)

Query: 140 MRVLFKWAVRQEYVAI---NPCLSVERPKRKTEGIRPWTKEDMQQ-----FKSFWSEGSQ 191
           ++ + + A R+        +    +ER  +KT   +   K+ + +     F     E   
Sbjct: 192 LKTVCRLAYREGIADTLMFDKTH-IERGDKKT--PKALDKDALDKLKALRFDELEKEMET 248

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVELPDGFMKLLA 246
            R  F F  Y+G    D      +HL  +           QKTG +  ++L    + L+ 
Sbjct: 249 ARDVFLFACYTGAAYCDLMELSKKHLVRDDAGNLWLKFNRQKTGVLCRIKLLPEAISLIE 308

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS-ADAGAT 303
                +    +      +    +    KA   +A +    + H  R   AT+   + G  
Sbjct: 309 KFHNDERETLL----PHVKYKNYQTCLKALRLRASIPFPFTTHTARHTFATLITLEQGVP 364

Query: 304 AHELMATYGWKTVDQAETYTK 324
              +    G   V   E Y K
Sbjct: 365 IETVSKMLGHTNVSMTERYAK 385


>gi|253581231|ref|ZP_04858488.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251847508|gb|EES75481.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 411

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 52/323 (16%), Positives = 105/323 (32%), Gaps = 54/323 (16%)

Query: 70  TLKWLISEYRKSAHWGSL-----AVNSRISFESYFDQIIRKSGDFDYRK----ITTKHIR 120
           T+  L  E+ +      L     A+     +  +        G+ +       +  K I 
Sbjct: 93  TVCMLFEEWLEYKKLYRLIKEPSAIRYETDYRRFI--YGTDFGNTEVADVTEEMLEKFII 150

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE---------RPKRKTEGI 171
           S +     T  +     T +  +FK+A +++Y +I+               R   K +  
Sbjct: 151 SAIFDNNLTAKAFSGLRTIIIGMFKYAKKRKYTSISITSFFGDLELSPNMFRHVVKNDED 210

Query: 172 RPWTKEDMQQFKSFWSEGSQPR-LAFEFLLYSGLRCSDSCRAGVQHLQ---------NNI 221
             +T  +++Q  ++  E    R L      ++GLR  +        +             
Sbjct: 211 EVFTDFEVRQISNYVKEHPTIRNLGVLLAFHTGLRVGELTVLTPDDIDWKNHILLINKTE 270

Query: 222 FSIKTQKTGTIIT--------------VELPDG----FMKLLAMTPIGKETFFINNDKQK 263
             IK + TG                  V   D       +++ + P GK   F N + ++
Sbjct: 271 IKIKDKTTGKYTYAVSDQGKTENSTRNVVFTDSAEWVLHQIIKINPHGK-YLFENPEGKR 329

Query: 264 MNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ET 321
           +  T  +          G+  +S H  RK  AT   DAG     +++  G   +    + 
Sbjct: 330 IRGTTMNKRLHGICRALGIKERSIHKSRKSYATQLLDAGIGDALIISQLGHSDILTTKKH 389

Query: 322 YTKGADRIRLGIKNSRRISSVVD 344
           Y +  +   L  +   ++ S + 
Sbjct: 390 YYR--NSHTLA-ETRDKLESALA 409


>gi|60115682|ref|YP_209473.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|168239749|ref|ZP_02664807.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|194733830|ref|YP_002112908.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|45758240|gb|AAS76452.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|194709332|gb|ACF88555.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197287589|gb|EDY26981.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
          Length = 325

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 32/283 (11%), Positives = 86/283 (30%), Gaps = 34/283 (12%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK-----ITTKHIRSGVESRKHTPS 131
            Y  S +    +  SR +  S+ + +    G           +   H+ +  E  + T  
Sbjct: 36  AYLLSLN----SHRSRQTMASFLNIVAVMLGAASLESCSWGSLRRHHVMAVTELLRDTGR 91

Query: 132 SA---IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI----RPWTKEDMQQFKS 184
           +      +L++++ + K A     + +     +   +          R   + +++   +
Sbjct: 92  ATATVNTYLSALKGVAKEAWMLRLMDVESFQHIRAVRNLRGSRLPSGRALPQGEIRALFA 151

Query: 185 FWSE-----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239
                    G++       +L  GLR S+     ++ +     +++    G    +    
Sbjct: 152 VCEADRSCLGARDAAMLAVILGCGLRRSEVVSLDLRDVVTQDRALRVLGKGNKERLAYVP 211

Query: 240 G-----FMKLLAMTPIGKETFFINNDKQ-------KMNATQFSIWFKAKATKAGV-NKSA 286
                     +               ++       ++         + +  +AG+   S 
Sbjct: 212 AGAWQRLQIWIDEIRGETPGPLFTRIRRFGDVTLNRLTDQAVYHILQVRQGQAGITKCSP 271

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           H +R+  AT   D G     +    G  +V   + Y +  ++ 
Sbjct: 272 HDLRRTFATAMLDNGEDLITVKDAMGHASVTTTQQYDRRGEQR 314


>gi|82523915|emb|CAI78637.1| integrase/recombinase [uncultured delta proteobacterium]
          Length = 279

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 39/262 (14%), Positives = 86/262 (32%), Gaps = 23/262 (8%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           L   Y +S H       +  S+    D+           +I++  +   +E      S +
Sbjct: 9   LFKYYLQSNH----KKRTIESYSPLIDKFETIYKHRSLEEISSDEVFQFLEDVTKNLSKS 64

Query: 134 IQFLT--SMRVLFKWAVRQE-YVAINPC---LSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            + L    ++  + + + +      NPC   L  +  K      R     +  +   + +
Sbjct: 65  TRRLRYAQIKAFYNFIIDRRSLNMRNPCNTSLLAKAFKAPKNSPRKILDRETVEEMIYKA 124

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG-----FM 242
           +  + RL  E     GLR  +  +  V  + +   +++  K+G                 
Sbjct: 125 KRHRDRLILELQAKCGLRIGELLKIRVSDIPDRTITLREPKSGKEAEKAYMPENVSRKLS 184

Query: 243 KLLAM-TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAG 301
           + +   T  G E  F       +  +      +    K  VN + H +R++SAT ++  G
Sbjct: 185 EYIQGSTIKGAERIF------PICYSTARSLIRGLGAKLNVNVTPHDLRRYSATYASRNG 238

Query: 302 ATAHELM-ATYGWKTVDQAETY 322
                +       + +   + Y
Sbjct: 239 VPLEVVSKVILRHQDLKTTQVY 260


>gi|332107807|gb|EGJ09031.1| Phage integrase [Rubrivivax benzoatilyticus JA2]
          Length = 427

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/290 (12%), Positives = 93/290 (32%), Gaps = 34/290 (11%)

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITT 116
                 P+      +  ++ +           +     +S  D  ++   GD    +IT 
Sbjct: 87  SPAAAVPKPASPNFREFVTTWLAEHQ-IEWRRSHLKVLKSTLDAHLLPAFGDKPVGEITK 145

Query: 117 KHIRSGVESRKHTPSSA---------IQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKR 166
             I +        P               L  +R +   A  +  +++  P  +V   K 
Sbjct: 146 SDILAFRAKLADKPGRTGDKLSSKRINNILGVLRQIMADAADRHGFIS--PSANVRPLKV 203

Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSI 224
           +   ++P++ + +QQ  +        R  F    ++G+R  ++     +++     +  +
Sbjct: 204 RKSDVQPFSLDQVQQILAV--VRPDYRDYFTVRFFTGMRTGEAHGLKWKYVDFERRLILV 261

Query: 225 KTQ---------KTGT-----IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS 270
           +           KT +      ++  + +   +  A T    E  F N +   ++   FS
Sbjct: 262 RETFVLGEDEYTKTDSSQRDIQMSQPVYEALKRQHAATGKLSEYVFCNREGHPLDNKNFS 321

Query: 271 --IWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
             +W+          +  + +R  +AT+   +G +   +    G      
Sbjct: 322 ERVWYPLLRHLELAPRRPYQMRHTAATLWLASGESPQWIANQLGHANSQM 371


>gi|328885775|emb|CCA59014.1| site-specific recombinase, phage integrase family [Streptomyces
           venezuelae ATCC 10712]
          Length = 283

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 43/257 (16%), Positives = 85/257 (33%), Gaps = 37/257 (14%)

Query: 105 KSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV 161
              D++ R I    ++S V          S+  +       + K AV ++ +++ PC  +
Sbjct: 4   HWADWELRDIARLDVQSWVRKMTVAGTGASAIRRAYNLTSSIMKAAVEEDLISVTPCRGI 63

Query: 162 ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG--VQHLQN 219
           + PK   +  + +T    Q   +   +  Q         Y+GLR  +           + 
Sbjct: 64  DLPKEAVKPPQWFTVPQAQAILAKLDQPWQ--TMALLAFYTGLRWGELAGLHGHRIDWRR 121

Query: 220 NIFSIKTQKTGTII-----------TVELPDGFMKLLAMTPIGKE---TFFINNDKQKMN 265
           +   +    T + I            V +PD  ++ LA    G+E     F    K +  
Sbjct: 122 SRLFVVEVNTKSGIKEYPKSSRSRREVPIPDHVLEALARHMHGREKDGVVFTTVTKGRAG 181

Query: 266 A------TQFSIWFKAKATK-----AG-----VNKSAHGVRKFSATISADAGATAHELMA 309
                   +  +W+ A         AG      +   H +R   A+     G + +E+  
Sbjct: 182 RLLDDGNWRKYVWWPAVKEATFLDFAGDLRPLPHYPPHSMRHTCASWLVQNGVSLYEVQH 241

Query: 310 TYGWKTVDQAETYTKGA 326
             G ++    + Y   A
Sbjct: 242 LLGHESYQTTQRYAHLA 258


>gi|291459642|ref|ZP_06599032.1| phage integrase [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291417674|gb|EFE91393.1| phage integrase [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 364

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 46/290 (15%), Positives = 92/290 (31%), Gaps = 43/290 (14%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVES--- 125
           T       Y        L  N+  + E     +I+    +    +I ++ I +       
Sbjct: 57  TFGSFYERYAADIR-PRLKENTWNTKEHIICTKILPYFQNRKMIEIKSRDIVAWQNELLT 115

Query: 126 ---RKHTPSSAIQFLTS---MRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKED 178
              +   P S     T    +  LF  A++   +  NP        K + + +  WT+E+
Sbjct: 116 CRDKTGKPFSQTYLKTIHNQLSALFNHAMKFYGLRANPARQAGNMGKEERKEMLFWTQEE 175

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT--------- 229
            ++F     +  Q   AFE L + G+R  +              ++   K+         
Sbjct: 176 YRKFADVMMDKPQSFYAFEMLYWCGIREGELLALTPADFDFYAGTVTINKSYQRIRGRDV 235

Query: 230 -------GTIITVELPDGF-------MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKA 275
                   +  T+++PD         M+LL         F +         +        
Sbjct: 236 ITDPKTPKSNRTIQMPDFLTEEIQEYMELLYGIEEKDRMFTVTK-------SYLHHEMDR 288

Query: 276 KATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            A +A V +   H +R    ++  + G +A  +    G +++D    Y  
Sbjct: 289 GAKEAKVKRIRIHDLRHSHISLLIEMGFSAVAIADRVGHESIDITYHYAH 338


>gi|254785433|ref|YP_003072862.1| integron integrase [Teredinibacter turnerae T7901]
 gi|237684485|gb|ACR11749.1| integron integrase [Teredinibacter turnerae T7901]
          Length = 322

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 43/294 (14%), Positives = 82/294 (27%), Gaps = 59/294 (20%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF----LTSM 140
              A  +  S+  +  + I  S      ++  + +   +       + A Q     L ++
Sbjct: 17  RRYAKRTIDSYLVWIRRFIVYSNKRHPAEMGDREVELFLSYLVLERNVAAQTQALALNAL 76

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200
             L++  V +        L         +     T +++++     S      L    L 
Sbjct: 77  SFLYRDIVNRPLSQ---TLRFVHSHAPRKLPVVLTPDEVRRLLERISP--VYFLPAALLY 131

Query: 201 YSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLLAMT---------- 248
            SGLR  +S R  V  +        I   K G   TV +    +  L +           
Sbjct: 132 GSGLRLMESVRLRVHDIDFEYCCIRIWNGKGGKHRTVTVAPELLAPLRVQTSVVERYLAL 191

Query: 249 ----PIGKETFFINNDKQKMNA--------------------------------TQFSIW 272
               P     +  +  ++K  +                                T     
Sbjct: 192 DINNPKYGGVWLPSALRRKYTSASKELEWHYLFPSSRLSIDPETGHLASHHICETGLQKA 251

Query: 273 FKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            +  A  A ++K  SAH +R   AT    +G     +    G   +   + YT 
Sbjct: 252 VRKAAGVAAISKTVSAHTLRHSFATHLLQSGTDIRTVQEQLGHADLRTTQIYTH 305


>gi|229512711|ref|ZP_04402179.1| site-specific recombinase phage integrase family [Vibrio cholerae
           TMA 21]
 gi|229350221|gb|EEO15173.1| site-specific recombinase phage integrase family [Vibrio cholerae
           TMA 21]
          Length = 414

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 53/350 (15%), Positives = 105/350 (30%), Gaps = 53/350 (15%)

Query: 19  GKIIYYFR---KGHGRRIRLPYPHESTFIPAYMSAL-------TGSTPK------REYIN 62
           G + + FR    G  +R+ L    + + + A   A         G  PK      R+   
Sbjct: 45  GNVRWQFRYKINGASKRVDLGDYPDLSLLKAREEAQKCREWLAEGHDPKLQRSVIRQETL 104

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122
            P      L++ + EY +S    +    S+         I    G     +  T H    
Sbjct: 105 KPVSVQDALEYWLVEYAESNRANADKHRSQFQK-----HIYPYIGALPLAQTETHHWIEC 159

Query: 123 VES--------RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV---ERPKRKTEGI 171
            +         ++  P +A   L + +   ++   + Y        +   +  K++ +  
Sbjct: 160 FDRVRKGIAGKQRPAPVAAGYVLQNAKQALRFCRVRRYATSRVLDDLTVNDVGKKQRKKD 219

Query: 172 RPWTKED-------MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
           R  T ++       +Q    F        L    +++ G R  +   +  +         
Sbjct: 220 RVLTAQELSDLWNAVQTPNKFLPYYCH--LVKFLIVF-GARTQEVRLSKWKEWDFETLLW 276

Query: 225 KT----QKTGTIITVELPDGFMKLLAMTPIG--KETFFINNDKQKMNATQFSI--WFKAK 276
                  KT   I   +PD  +  L        KE   +  +K     +Q     W +  
Sbjct: 277 TVPKEHSKTDEKIIRPIPDELVPWLLQLKADSDKEALILGEEKSPETVSQQGRFFWQRLG 336

Query: 277 ATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
             +A    + H +R+  AT   + G   + +    G         Y +  
Sbjct: 337 HEEA---WTLHDIRRTLATRLNELGVAPYVVEQLLGHSLGGVMAIYNRSQ 383


>gi|228968096|ref|ZP_04129101.1| hypothetical protein bthur0004_48810 [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228791587|gb|EEM39184.1| hypothetical protein bthur0004_48810 [Bacillus thuringiensis
           serovar sotto str. T04001]
          Length = 347

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 49/359 (13%), Positives = 114/359 (31%), Gaps = 53/359 (14%)

Query: 11  VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
           V K++ R     +YF      ++R    +             G   + + I +  +   +
Sbjct: 3   VYKDKERK---TWYF------KVRYKDMYG----RNKQKLKRGFKKRGDAILAEAEFVAS 49

Query: 71  LKWLISE-------YRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTK---HI 119
           +K   ++       +  + ++ +    +     + ++  I  + G    + I T+     
Sbjct: 50  IKDAFTDEVTFDEVFEHNINFKTYKPKTIRRRTNEYNLHIKPRFGHIKVKDINTQQVLDF 109

Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
           +  + S   +P SA    ++ +VL   A R   +  +P L V    R  + I    +ED 
Sbjct: 110 QKYLSSSLSSPESARTVYSNFKVLMNHAKRFYNLRYDPTLQVPTMPRGKKRIDFIKREDF 169

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-------- 231
            +    ++      L    + Y+GLR  ++       +      I   K+ +        
Sbjct: 170 DKRVQEFNMHYYKELTI-LMFYTGLRVGEALALKWIDIDLAEQQINVNKSWSLNERVLTS 228

Query: 232 ------IITVELPDGFMKLLAMTPIG--------KETFFINNDKQKMNATQFSIWFKAKA 277
                    V +P   + +L               E  F+       +   +   +K   
Sbjct: 229 VKTAASEAIVPIPKLLVGMLGGIKKESAEKTYGFDENHFVFCGVTPYHYNHYHKKYKEVF 288

Query: 278 TKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ-AETYTK-GADRIRLGIK 334
            +       H +R   A    + G   + +      + + + A+TY     +R +  + 
Sbjct: 289 PE----LRIHSLRHSYAAYLINKGVDIYLVKELMRHENIKETADTYGHLYIERKQKAMS 343


>gi|212703057|ref|ZP_03311185.1| hypothetical protein DESPIG_01096 [Desulfovibrio piger ATCC 29098]
 gi|212673645|gb|EEB34128.1| hypothetical protein DESPIG_01096 [Desulfovibrio piger ATCC 29098]
          Length = 287

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/265 (13%), Positives = 83/265 (31%), Gaps = 23/265 (8%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           T + L  +Y        +   +R S   + +Q++   G +  R++    +R  +  +K  
Sbjct: 2   TARQLAEDYLAHQITRDV---TRTSTRHHLNQLLALFGGWQARRVGADQVREFLAVQKTR 58

Query: 130 ---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
               ++A   +   R +  WAV    +  +P       + +   I P T+ +  +     
Sbjct: 59  GVMATTAHHRVRLWRTVLAWAVETGRLPASPLAGFRLHRPRARRIDPPTRAEAARMYKV- 117

Query: 187 SEGSQPRLAFEFLLYSGLRCS--DSCRAGVQHLQ--NNIFSIKTQKTGTIIT---VELPD 239
                 R      + +G R    +  R     +        +     G+      V + D
Sbjct: 118 -AAPHIRRVIVLGMAAGPRIGPSELFRLAWADVDLAAGYMRMPNAAKGSRDDSRIVPIRD 176

Query: 240 GFMKLLAMTPIGKE----TFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFS 293
             + LL       E     + I+   + +        +      AG+ +  + + +R   
Sbjct: 177 DILPLLRAWKEEDEKQGCPWVIHWQGRPVRC--IGHAWHQARKAAGITRRITPYSLRHAM 234

Query: 294 ATISADAGATAHELMATYGWKTVDQ 318
            T + + GA    +    G      
Sbjct: 235 PTEALEHGADVKAVAEVMGHADPTM 259


>gi|210632076|ref|ZP_03297198.1| hypothetical protein COLSTE_01092 [Collinsella stercoris DSM 13279]
 gi|210159733|gb|EEA90704.1| hypothetical protein COLSTE_01092 [Collinsella stercoris DSM 13279]
          Length = 302

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 42/269 (15%), Positives = 84/269 (31%), Gaps = 20/269 (7%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           L    S Y ++     L   +   + S     ++   G  +   I  + ++  V+S   T
Sbjct: 3   LSDACSAYMEAKS-KKLRRTTLEGYASGLRCHVLPAWGGRELESIRRREVQEWVDSI-PT 60

Query: 130 PSSAIQFLTSMRVLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           P +A + L  +R + +WA+R  +    +P   VE P +             +      + 
Sbjct: 61  PGAAEKALKCLRQVMRWAIRSLDLEIFDPTQGVELPPKPVYRRES-MDAREEACVLRAAV 119

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-----GTIITVELPDGFMK 243
           G             GLR S++       +      +  Q+      G  +          
Sbjct: 120 GQPWEAVVLCAAALGLRPSEAAGLDWGDVDWRSGWVHVQRGAHSTQGGTVEYGCKTRLSD 179

Query: 244 LLAMTPIGKETFFINND--------KQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSA 294
                P                   + +++  Q    FK    + G+   S   +R   A
Sbjct: 180 RHLKLPRFALERLRQLRGQRRKGRMRGELSPRQIYSRFKRFLRRMGLGRCSMECLRHTWA 239

Query: 295 TISADAGATAHELMATYGWKTVDQ-AETY 322
           T++ + GA   ++    G  +V    + Y
Sbjct: 240 TLTIEGGAALADVSVALGHTSVSTCLQHY 268


>gi|124004236|ref|ZP_01689082.1| transposase, putative [Microscilla marina ATCC 23134]
 gi|123990306|gb|EAY29805.1| transposase, putative [Microscilla marina ATCC 23134]
          Length = 420

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 51/326 (15%), Positives = 104/326 (31%), Gaps = 47/326 (14%)

Query: 44  IPAYMSALTGSTP----KREYINSPRKKPT-TLKWLISEYRKSAHWGSLAVNSRISFESY 98
           + AY   L         K + +    ++   T    +    +SA+   L   ++   +  
Sbjct: 84  LNAYTDLLNEEEEVRLQKLKAVAKGEEEKGITF---LEVLTRSANRSGLRSGTQRKIKIS 140

Query: 99  FDQI----IRKSG--DFDYRKITTKHIR------------------SGVESRKHTPSSAI 134
              +      + G  D     +  +  +                   G         +AI
Sbjct: 141 IQNLKLFLRDEYGKEDIYLTDLLKEAYKGFDIRYVGWCTTKTTIRFDGSTRLPKKHQTAI 200

Query: 135 QFLTSMRVLFKWAVRQEYVAINP-CLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEG- 189
           + +   R     AV+   +  NP     + PK +       T ++++Q          G 
Sbjct: 201 KEVRHFRQAVNTAVQLGEIRTNPLIAKFKIPKDERPKRVILTLDELKQIMEVDLSDKRGM 260

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDGFMKLL 245
            + R  F F  ++G   SD      +HL    +      +  K+ TI  + L      +L
Sbjct: 261 ERVRDCFVFQCFTGFAFSDIVDLKPEHLIEQGERTWIIKERVKSSTIAKMPLLPQARFIL 320

Query: 246 AMTPIGKETFFINNDK--QKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301
                  +   ++       + +  ++ + K  A   G++K  ++H  R+  AT+  +AG
Sbjct: 321 D--KYKDDPVCLSKGVLIPVITSGNYNTYLKMIAEYVGIDKHLTSHVGRRTFATLVYNAG 378

Query: 302 ATAHELMATYGWKTVDQAETYTKGAD 327
               +L    G       E Y   A+
Sbjct: 379 TDRSKLKEMTGHTNEAITEIYASLAN 404


>gi|34540596|ref|NP_905075.1| integrase [Porphyromonas gingivalis W83]
 gi|34541125|ref|NP_905604.1| integrase [Porphyromonas gingivalis W83]
 gi|34396909|gb|AAQ65974.1| integrase [Porphyromonas gingivalis W83]
 gi|34397441|gb|AAQ66503.1| integrase [Porphyromonas gingivalis W83]
          Length = 409

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 39/281 (13%), Positives = 90/281 (32%), Gaps = 24/281 (8%)

Query: 83  HWGSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSG----VESRKHTPSSAIQF 136
                      +  +  + I +K    D  + ++T + I       V+ +  T  ++  +
Sbjct: 129 RAKGTYPAYFYTRRTLAEFIQKKFHSKDIAFGQLTEQFIHDYQFFVVDDKGLTIETSRHY 188

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK-----SFWSEGSQ 191
           L  ++ + + A ++ Y           PK++ +  +  ++E  ++ +        S    
Sbjct: 189 LAIIKKVCRKAYKEGYADKCFFAHFSLPKQEEKTPKALSRESFEKIRDLVIPEHRSSHIL 248

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVELPDGFMKLLA 246
            R  F F  Y+G   +D+      +L  +         + +K      V+L    ++L+ 
Sbjct: 249 ARDLFLFACYTGTSYADAVSVTRDNLFTDDEGSLWLKYRRKKNELQACVKLLPEALELIE 308

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS-ADAGAT 303
                                      K  A  A +  + + H  R   A++   +AG  
Sbjct: 309 KYNDDTRPTLFPMLYHP----NLRRLMKCLAVLADIKEDLTYHAGRHSFASLITLEAGVP 364

Query: 304 AHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
              +    G   +   + Y K     +L     + I +  D
Sbjct: 365 IETICKMLGHSNLQTTQRYAK-VTPKKLFEDMDKYIEATKD 404


>gi|325978235|ref|YP_004287951.1| ICEBs1 integrase [Streptococcus gallolyticus subsp. gallolyticus
           ATCC BAA-2069]
 gi|325178163|emb|CBZ48207.1| ICEBs1 integrase [Streptococcus gallolyticus subsp. gallolyticus
           ATCC BAA-2069]
          Length = 410

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 42/280 (15%), Positives = 86/280 (30%), Gaps = 37/280 (13%)

Query: 82  AHWG-SLAVNSRISFESYFDQIIRKSGDFDYRKITTKH---IRSGVESRKHTPSS---AI 134
            H+   +  ++  S       ++ + G    RKIT       R+ +  +     +   A 
Sbjct: 86  PHYKTEVTEDTFESRNPTLKILLARFGKKPLRKITLHDVQFFRTWLLDKNGGAYAQSYAS 145

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK-SFWSEGSQPR 193
                ++ + ++AV   Y+  N    V+   +    +  WTK++ ++     + E     
Sbjct: 146 MVFGMLKKILEFAVNLNYLDKNIAQQVKPIPKGKTDVAYWTKDEFEKVLSKIYVEDFYEH 205

Query: 194 LAFEFL---LYSGLRCSDSCRAGVQHLQNNIFSIKT-----------------QKT--GT 231
           L F  L     +G+R ++        +  +   ++                   KT  G 
Sbjct: 206 LCFVLLWVYYMTGIRVNEGTALWWNDVDFDKKQLRVHHMLITKSRKNYKRKNHTKTADGK 265

Query: 232 IITVELPDGFMKLL----AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SA 286
            +     D    L          G   F  + D   M  +         A  AGV    A
Sbjct: 266 RVLTLDDDTLEVLRVWKERQAQYGDMDFIFSYDGLPMIKSTIGRIIARYAKLAGVPVIQA 325

Query: 287 HGVRKFSATISA-DAGATAHELMATYGWKTVDQA-ETYTK 324
            G+R    +    +  A+   +    G  + +   + Y  
Sbjct: 326 KGLRHSHVSFLINEINASVLIVSKRLGHSSPEITLKHYAH 365


>gi|206603037|gb|EDZ39517.1| Integrase [Leptospirillum sp. Group II '5-way CG']
          Length = 185

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/179 (18%), Positives = 57/179 (31%), Gaps = 18/179 (10%)

Query: 155 INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE--GSQPRLAFEFLLYSGLRCSDSCRA 212
            NP  S+  P   +   R     ++++     SE  G   R A E    + +R  +    
Sbjct: 5   KNPVKSIRLPSPPSGRDRRLQPGELEKILESVSEEMGQVIRFALE----TAMRRGELAGM 60

Query: 213 GVQHLQNNIFSIK----TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN--A 266
               +     ++       K G    V L       +A+T +         D +  N   
Sbjct: 61  TWDMVDLKKRTVTLPETKTKNGQKRIVPL-----SSVAVTILKDRLSTRRIDGKVWNIGL 115

Query: 267 TQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              S  F     KA + +   H +R  + +   + G    E+    G KT+     YT 
Sbjct: 116 DAISQDFAKACQKAEISDLHFHDLRHEATSRLFEKGFDTMEVRTITGHKTLQMLARYTH 174


>gi|206579294|ref|YP_002238658.1| site-specific recombinase, phage integrase family [Klebsiella
           pneumoniae 342]
 gi|206568352|gb|ACI10128.1| site-specific recombinase, phage integrase family [Klebsiella
           pneumoniae 342]
          Length = 332

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 43/274 (15%), Positives = 81/274 (29%), Gaps = 33/274 (12%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDY------RKITTKHIRSGVESRKHTPSSAIQFLTSMR 141
           A N+  ++    +  +              R     ++RS    R+   ++    LT +R
Sbjct: 31  APNTINAYARGVNDWLAFCHSVALTAAVAGRDTVALYVRSLHTGRQLAAATIRHRLTVVR 90

Query: 142 VLFKWAVRQEYVAINPCL-SVERPKRKTEG-------IRPWTKEDMQQFKSFWSEGS--- 190
           +   W   +     NP    V +   K +          PW  +D +  +     G    
Sbjct: 91  LYNDWLCEEGIRERNPVRRGVWKNGGKGKAGIVPVQRRLPWIPDDAEWLRFLEVAGQADI 150

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ--KTGTIITVELPD------- 239
           + R         GLR  + C      +     + +++ +  K      V           
Sbjct: 151 RTRFMLALAYDCGLRREELCTVATGDIDPSQRLLTVRAEHTKNRFGRVVPYSPVTGELYT 210

Query: 240 -GFMKLLAMTPIGKETFF---INNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSA 294
               +   ++      F      N  + ++   +S   +  A KA     S H  R    
Sbjct: 211 AWLTERRMLSSSRGPLFLSRSPRNRAEPISNWTWSKVVRGLALKADFPLISTHTFRHLCL 270

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           T  A  G   HE+ A  G + +     Y   + R
Sbjct: 271 TELARVGWDIHEIAAFAGHRRIQSTLLYIHLSAR 304


>gi|154488726|ref|ZP_02029575.1| hypothetical protein BIFADO_02033 [Bifidobacterium adolescentis
           L2-32]
 gi|154082863|gb|EDN81908.1| hypothetical protein BIFADO_02033 [Bifidobacterium adolescentis
           L2-32]
          Length = 446

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 49/304 (16%), Positives = 111/304 (36%), Gaps = 43/304 (14%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--TPSSAIQFLTSMRV 142
             L+  S+   ++  D+++   G+   R IT + +            PS+    +  ++ 
Sbjct: 105 SELSGRSKRIQKAALDKLLPWFGETPMRDITEEFVNEWYARACDEVRPSALEHAVWLLKR 164

Query: 143 LFKWAVRQE------YVAINPCLSVERPKRKTEGIR-PWTKEDMQQFKSFWSEGSQPRLA 195
           + + A  ++       ++ NPC  V R ++     + P TK+++      + E  +  + 
Sbjct: 165 VMRAATERQPDGGPPLLSSNPCNLVTRKRQSKRRDQAPMTKQEIDALVEGFPEYDRLSVH 224

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQ----------------NNIFSIKTQKTG---TIITVE 236
              L+  GLR  + C   ++ +                 +++ + +  +T    +   V 
Sbjct: 225 LALLVG-GLRIGEVCGLQLRDIDLEHGLLYVRHSVTQGPDDLGAYRLDETKTPESRRVVP 283

Query: 237 LPDGFMKLLA------MTPIGKETFFINNDKQK---MNATQFSIWFKAKATKAGV-NKSA 286
           +P    +L+             +T   +  +     +N T     F+    +    + + 
Sbjct: 284 IPAPVCRLIREHIDRFCPNRNPDTMLFHAPRHPERVLNPTTIQRQFRTARKRIDREDVTF 343

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAET-YTKGADRIRLGIKNSRRIS-SVVD 344
           H +R   AT+    G T  E M   G   VD A   Y +   R R  +    R++   + 
Sbjct: 344 HSLRATHATMFMIQGGTLRETMDELGHVDVDVAVRCYQRVVPRHRRDV--VERLALEYLP 401

Query: 345 SDDP 348
           +++P
Sbjct: 402 AEEP 405


>gi|77734445|emb|CAJ26229.1| integerase-recombinase [Thermotoga sp. KOL6]
          Length = 190

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/199 (17%), Positives = 69/199 (34%), Gaps = 31/199 (15%)

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAI-----NPCLSVERPKRKTEGIRPWTKE-DMQQ 181
           ++P++    L  ++    W V +  + +     N     E PK          K  ++++
Sbjct: 10  NSPATQRNKLVVVKNYLNWKVDRGMMNVENRFWNEA---EPPK-----HHVLPKAIEIEE 61

Query: 182 FKSFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQNN---IFSIKTQKTGTIITVE 236
            +        P  +  F+ L  +G+R S+      + +  N      IK +     I + 
Sbjct: 62  VRKIIEICDHPMYKAIFKILANTGMRISELINLEKEDISLNDSARIRIKGKGNKERI-IN 120

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSA 294
           +    ++ L         FF     +K +        +  A KAG+ K  + H  R   A
Sbjct: 121 VTKDLIEEL-----INSGFFE----KKPSVRSIQRAVRRYARKAGIKKKVTPHVFRHSFA 171

Query: 295 TISADAGATAHELMATYGW 313
               + G   +++ A  G 
Sbjct: 172 VALIERGVPLNKIQALLGH 190


>gi|313576819|gb|ADR66995.1| phage integrase family protein [Klebsiella pneumoniae subsp.
           pneumoniae]
          Length = 305

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 38/249 (15%), Positives = 83/249 (33%), Gaps = 15/249 (6%)

Query: 92  RISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS--SAIQFLTSMRVLFKWAVR 149
           +  + S    +    G+   ++I  + +   +E  K   +  +  + +  +  +  +AV 
Sbjct: 35  KDIWRSLEKDVFPTIGEIPVQQIKARTLVEALEPIKARGALETVRRLVQRVNEIMIYAVN 94

Query: 150 QEYVAINPCLSVERP--KRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLAFEFLLYSGL 204
              +  NP   +     K K + +     E++          +     R   E+ L + +
Sbjct: 95  TGLIDANPASGIGMAFEKPKKQNMPTLRPEELPMLMRSLVMSNLPVPTRCLIEWQLLTLV 154

Query: 205 RCSDSCRAGVQHLQNNIFSIK----TQKTGTIITVELPDGFMKLLAMTP---IGKETFFI 257
           R S++  A    L  +           K      V L    +++L +       +E  F 
Sbjct: 155 RPSEASGARWAELDLDAKLWTIPAERMKAKREHIVPLSPQAIEILEVMKPISAHREYVFP 214

Query: 258 NNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVD 317
           + +  KM     +     K         AHG+R  ++T   +AG  A  + A       +
Sbjct: 215 SRNDPKMPMNSQTANAALKRIGYSGKLVAHGLRSIASTAMNEAGLNADVIEAALAHTYKN 274

Query: 318 QAET-YTKG 325
           +    Y + 
Sbjct: 275 EVRKAYNRS 283


>gi|303239112|ref|ZP_07325642.1| integrase family protein [Acetivibrio cellulolyticus CD2]
 gi|302593450|gb|EFL63168.1| integrase family protein [Acetivibrio cellulolyticus CD2]
          Length = 340

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 42/313 (13%), Positives = 91/313 (29%), Gaps = 48/313 (15%)

Query: 75  ISEYRKSAHWGSLAVNSRISF----ESYFDQIIRKSGDFDYR--------KITTKHIRSG 122
           +S+Y       +++ N+  S+      + +      G   ++        ++    +   
Sbjct: 14  LSQYL--PELKNVSSNTISSYCDTFRLFLEYCRDTEGMKIHKMSLCDIKPELVASFLEWL 71

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQE---YVAINPCLSVERPKRKTEGIRPWTKEDM 179
              RK++ S+  Q L ++    ++   Q+    +     L +   K+ ++  R  TKE++
Sbjct: 72  ENERKNSISTRNQRLAAIHSFVRFVQTQDPKLLLNFQKILDIPIKKKASKPPRHLTKEEV 131

Query: 180 QQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN---IFSIKTQKTGTI 232
                        G +       L  +  R  + C   V  ++        I  +   T 
Sbjct: 132 AVILRQPDILTLHGRRDATILCVLYDTAARAQELCDLRVADVRLEHPANVRITGKGRKTR 191

Query: 233 ITVELPDG--------FMKLLAMTPIGKE-TFFINNDKQKMNATQFSIWFKAKATKAGVN 283
           + V L             +   + P       F N +   +              +   N
Sbjct: 192 V-VPLLPATMQNLKNYLSENRLLDPEKNHCPLFPNREGNHLTRAGLRYILTKYVQQTEEN 250

Query: 284 K-------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKN 335
                   S H  R   A    ++G     +    G   +     Y + + +  R     
Sbjct: 251 GDVISKRISPHVFRHTKAMHVYESGNNLIYVRDFLGHADISTTGVYARTSLNMKRQA--- 307

Query: 336 SRRISSVVDSDDP 348
              +  V DS  P
Sbjct: 308 ---LEKVSDSPVP 317


>gi|291334742|gb|ADD94387.1| hypothetical protein EIKCOROL_00560 [uncultured phage
           MedDCM-OCT-S05-C113]
          Length = 266

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 38/235 (16%), Positives = 87/235 (37%), Gaps = 16/235 (6%)

Query: 98  YFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAI 155
           Y  ++       +   IT     +   +     + S+A +   +++ +  + + ++Y   
Sbjct: 24  YCKRMGDVWSHLNITDITPDRWVNFRINHLSNSSDSTANRCRDTLQTVLNF-ITKKYDIK 82

Query: 156 NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ 215
            P   V R +   + +R  T E+  +    + +  +P   F  L Y+G+R +++      
Sbjct: 83  FP--KVPRYRVYNDRVRFLTIEEAHKLLDAYDDVVKPL--FYCLAYNGVRKTEASLYTWS 138

Query: 216 HLQNNIFSIKTQKTGT-IITVELPDGFMKLLAMTPIGKETFFINNDKQKM-----NATQF 269
             ++N   +  + T T    + +      L+   P G +  F +   ++       + +F
Sbjct: 139 MYKDNYIIVPKEITKTFPRRMPVHSKLRALIK--PNGSDYLFPHPSGRRWKKWKGGSAEF 196

Query: 270 SIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
             + +    K G+ + + H  R   A+     G     LMA  GW +      Y 
Sbjct: 197 DKYHRKAVKKVGIKDFTIHDWRHHFASHIMMNGGNLKVLMALGGWSSTRSVMRYA 251


>gi|312868308|ref|ZP_07728508.1| site-specific recombinase, phage integrase family [Streptococcus
           parasanguinis F0405]
 gi|311096053|gb|EFQ54297.1| site-specific recombinase, phage integrase family [Streptococcus
           parasanguinis F0405]
          Length = 383

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 51/350 (14%), Positives = 112/350 (32%), Gaps = 59/350 (16%)

Query: 26  RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG 85
           R  H +   L       +   Y           + +        T+  L    ++     
Sbjct: 26  RIRHRKSNFLTKKEAEEYEAYYRIHKLNQIQNTKKL--------TISSLYVMLKEEDELR 77

Query: 86  SLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESR---------KHTPSSAIQ 135
                +  +  SY+   + R   + D   +T + ++   +             TP+   Q
Sbjct: 78  GNKRGTIDTQNSYYTQYVSRFFENADMSSVTIQDVKKYRDWLIEQPSVKGGTLTPTHINQ 137

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP-RL 194
            +  +  LF  A+ + +   NPC ++ +   K + +  +T E  ++F+S++ E   P +L
Sbjct: 138 QMIFVHKLFDIAISKGFRQDNPCDAIRKLPEKHKEMSYYTPEQFKKFESYFEESEYPFKL 197

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK----------------TGTIITVELP 238
            +  L+++G+R  ++     + +  +   IK +K                T +   + + 
Sbjct: 198 LYRVLMFTGIRMGEALALTWRDVFLDEGYIKIRKSAYYRNGKTHIGSVKTTQSNREIYIH 257

Query: 239 DGF------------MKLLAMTPIGKETFFINNDKQKMNA---TQFSIWFKAKATKAGVN 283
             F             +L  +T    +        + M A   + F   FK +  +    
Sbjct: 258 KAFVDELKTWKSVQSQRLSKLTDSTDDLQIFQFSGEPMTAPNVSNFRATFKKRLPEDFKL 317

Query: 284 KSAHGVRKFSATISADAGATAHE--------LMATYGWKTVDQA-ETYTK 324
              H  R        + G    E        LM   G  +++     Y+ 
Sbjct: 318 IRNHDFRHSHVAFLINQGLRRGEGKDYIFFTLMKRLGHSSINTTINIYSH 367


>gi|195963186|emb|CAQ43011.1| transposase B [Staphylococcus aureus]
          Length = 630

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 42/289 (14%), Positives = 83/289 (28%), Gaps = 33/289 (11%)

Query: 71  LKWLISEY----RKSAHWGSLAVNSRISFE--SYFDQIIRKSGDFD-YRKITTKHIRSGV 123
            K L+  Y         +  ++  ++   E  ++ D   ++        ++  +   S +
Sbjct: 218 FKQLVKRYCKLRLNVDSFSYVSDIAQRLKEFFNFLDMKFKQVQRVHQLTRVENEAYLSEL 277

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV----ERPKRKTEGIRPWTKEDM 179
                 PS+    ++ +  LF   +R E+    P   +    + PK      R   +  +
Sbjct: 278 NMMGIKPSTITGRISILEGLFSTLLRLEW-DDVPSKILIYSEDYPKIPRAKPRFIDEFVL 336

Query: 180 QQFKSFWS-EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTII 233
           +Q  S               +   G+R S+ C      L  +            K     
Sbjct: 337 EQLNSHLDKLPEYIATMTMIVQECGMRISELCTLKKGCLLEDKDGDFFLKYYQWKMKKEH 396

Query: 234 TVELPDGFMKLLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKS 285
            V +      L+ +            E  F   D   +    F       A +  + +KS
Sbjct: 397 IVPISKEVALLIKVREDKVSEEFPDSEYLFPRKDGSPLKQETFRGELNKLAYEQNIVDKS 456

Query: 286 -------AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
                  AH  R    T   + G   H +    G ++ +    Y    D
Sbjct: 457 GEIYRFHAHAFRHTVGTRMINNGMPQHIVQKFLGHESPEMTSRYAHIFD 505


>gi|165873378|ref|ZP_02217977.1| integrase/recombinase, putative [Bacillus anthracis str. A0488]
 gi|167636799|ref|ZP_02395082.1| integrase/recombinase, putative [Bacillus anthracis str. A0442]
 gi|167642097|ref|ZP_02400319.1| integrase/recombinase, putative [Bacillus anthracis str. A0193]
 gi|170689746|ref|ZP_02880916.1| integrase/recombinase, putative [Bacillus anthracis str. A0465]
 gi|170709562|ref|ZP_02899962.1| integrase/recombinase, putative [Bacillus anthracis str. A0389]
 gi|177656393|ref|ZP_02937286.1| integrase/recombinase, putative [Bacillus anthracis str. A0174]
 gi|190569558|ref|ZP_03022419.1| integrase/recombinase, putative [Bacillus anthracis Tsiankovskii-I]
 gi|225871653|ref|YP_002753011.1| integrase/recombinase, putative [Bacillus cereus 03BB102]
 gi|227811599|ref|YP_002811610.1| integrase/recombinase, putative [Bacillus anthracis str. CDC 684]
 gi|229599814|ref|YP_002860839.1| integrase/recombinase, putative [Bacillus anthracis str. A0248]
 gi|254687863|ref|ZP_05151719.1| integrase/recombinase, putative [Bacillus anthracis str.
           CNEVA-9066]
 gi|254739157|ref|ZP_05196859.1| integrase/recombinase, putative [Bacillus anthracis str. Western
           North America USA6153]
 gi|254744957|ref|ZP_05202634.1| integrase/recombinase, putative [Bacillus anthracis str. Kruger B]
 gi|254756553|ref|ZP_05208582.1| integrase/recombinase, putative [Bacillus anthracis str. Vollum]
 gi|254762487|ref|ZP_05214327.1| integrase/recombinase, putative [Bacillus anthracis str. Australia
           94]
 gi|301068214|ref|YP_003786985.1| integrase/recombinase [Bacillus anthracis CI]
 gi|164710753|gb|EDR16331.1| integrase/recombinase, putative [Bacillus anthracis str. A0488]
 gi|167509780|gb|EDR85204.1| integrase/recombinase, putative [Bacillus anthracis str. A0193]
 gi|167527725|gb|EDR90564.1| integrase/recombinase, putative [Bacillus anthracis str. A0442]
 gi|170125523|gb|EDS94450.1| integrase/recombinase, putative [Bacillus anthracis str. A0389]
 gi|170666121|gb|EDT16914.1| integrase/recombinase, putative [Bacillus anthracis str. A0465]
 gi|172079753|gb|EDT64870.1| integrase/recombinase, putative [Bacillus anthracis str. A0174]
 gi|190559337|gb|EDV13361.1| integrase/recombinase, putative [Bacillus anthracis Tsiankovskii-I]
 gi|225785568|gb|ACO25786.1| putative integrase/recombinase [Bacillus cereus 03BB102]
 gi|227007973|gb|ACP17715.1| integrase/recombinase, putative [Bacillus anthracis str. CDC 684]
 gi|229269433|gb|ACQ51069.1| integrase/recombinase, putative [Bacillus anthracis str. A0248]
 gi|300379300|gb|ADK08203.1| integrase/recombinase, putative [Bacillus cereus biovar anthracis
           str. CI]
          Length = 347

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/277 (13%), Positives = 79/277 (28%), Gaps = 31/277 (11%)

Query: 85  GSLAVNSRISF----ESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSM 140
              +  ++  +      +   I    G           I     S+K+  ++  +  T +
Sbjct: 59  KKRSERTKKLYLHDLSHFLRYIKETIGIIKELSHNEMEIYFYQLSKKYAATTLRRKKTVV 118

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEG--IRPWTKEDM-QQFKSFWSEGSQPRLAFE 197
           +   K+      ++ N    +++   K E    R    E++ +   +           F 
Sbjct: 119 QQFLKYVYDNNGLSDNFSSRLKKVSVKKEELVNRDLFPEEVNEILDTLKKTNFFMYSLFF 178

Query: 198 FLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIIT-VELPDGFMKLLAMT---- 248
            L  +GLR  +   A    L      N++ ++    G     V + +  +  L       
Sbjct: 179 LLTTTGLRIEEVANAKWADLVFHPSLNVYLLRVVGKGNKTREVRIFEDVLNDLCHLRQLR 238

Query: 249 -------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--------KSAHGVRKFS 293
                        F    D     A   S +   K  +  +          + H  R F 
Sbjct: 239 KQKSELDASSSSAFLPKADGSHYRADYLSKYVAEKIEETNLPFLRYRKHRITPHTCRHFF 298

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
           A      G    ++    G +++   E Y +   R +
Sbjct: 299 ANHLMGKGVELKKIRDYLGHESIMTTERYLRERTRRQ 335


>gi|38637713|ref|NP_942687.1| putative integrase/recombinase [Ralstonia eutropha H16]
 gi|32527051|gb|AAP85801.1| putative integrase/recombinase [Ralstonia eutropha H16]
          Length = 415

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 50/284 (17%), Positives = 100/284 (35%), Gaps = 32/284 (11%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV--ESRKHTPSSAIQFLTSMRVLFK 145
           +  +  +       + R+  D    K+    +R  +  +S K   ++A    T++R+L +
Sbjct: 140 SDATLYNHGIALRDLFRRGDD--LGKLNAMDLRQFILEQSMKKGWAAAKHCTTALRMLVR 197

Query: 146 WAVRQEYVAINPCLSVERPKR--KTEGIRPWTKEDMQQFKSFW----SEGSQPRLAFEFL 199
           + + +   A     ++        +   R    +++++  +        G + R     L
Sbjct: 198 FLIAEGKCAAGLEAAIPVLAHWSLSTLPRYLQLDEVERVIASCDTASPVGQRDRAILLLL 257

Query: 200 LYSGLRCSDS--CRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL------AMTPIG 251
              GLR  D    R G    ++   S+ + K G    + L     + +            
Sbjct: 258 ARLGLRAGDIWHLRIGDIDWKDASISV-SGKNGRQTLLPLTQEVGQAIVDYLRQGRPRTD 316

Query: 252 KETFFINN---DKQKMNATQFSIWFKAKATKAGVNKS----AHGVRKFSATISADAGATA 304
            +T F+      +   N    SI  K    +AGV  S    AH +R   AT     GA+ 
Sbjct: 317 TDTVFVRACAPFQAFANHAAISIIVKKAMRRAGVVCSSRGAAHVLRHSVATSMLGQGASL 376

Query: 305 HELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
            ++ A    ++V   + Y K      + I   R+I+     + P
Sbjct: 377 QDIAAVLRHQSVATTQIYAK------VDIAALRQIAQPWPEELP 414


>gi|294839589|ref|ZP_06784272.1| putative prophage integrase [Acinetobacter sp. 6013113]
 gi|294859863|ref|ZP_06797632.1| putative prophage integrase [Acinetobacter sp. 6013150]
          Length = 385

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 43/277 (15%), Positives = 91/277 (32%), Gaps = 28/277 (10%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPS 131
           ++ E+         +     + E     +     +    ++  KHI   ++    K T  
Sbjct: 87  VVEEWLSIMKSQWTSKKYYDTVEYRLAYLTEDFKNLPINEVERKHISKKIKEIVAKGTLE 146

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVE--RPKRKTEGIRPWTKEDMQQFKSFWSE- 188
           +A + L   + +F +A+  +Y   NPC  VE   P+ +++        +M +F       
Sbjct: 147 TASRALRLGKQVFDFAIASDYTDRNPCTLVEDVIPEYESDSHPCLPVSEMPEFFKRMKAS 206

Query: 189 --GSQPRLAFEFLLYSGLRCSDSCRAGVQ----HLQNNIFSIKTQ--KTGTIITVELPD- 239
              S  ++A   + Y+G R ++  +A         +N ++ I  +  K    + V L   
Sbjct: 207 HSSSIVKMAMLLVCYTGTRITELLKARWDTGEIDFENKVWIIPAERMKKRKELMVPLVPQ 266

Query: 240 --GFMKLLAMTPIGKETFFINNDKQK---MNATQFSIWFKAKATKAGVNKSAHGVRKFSA 294
                K L          F     +    M +       K       +    HG R   +
Sbjct: 267 IYALFKELESVKTDDGYIF-KKRGKPYEHMTSESVLTMIKRMGYTDKM--VTHGFRSLFS 323

Query: 295 TISADAGATAHELMAT-YGW-----KTVDQAETYTKG 325
           T + ++     E++           K    ++ Y + 
Sbjct: 324 THANESKLFRGEVIDYQIAHVNKSTKADKTSKIYNRA 360


>gi|257066445|ref|YP_003152701.1| site-specific tyrosine recombinase XerC [Anaerococcus prevotii DSM
           20548]
 gi|256798325|gb|ACV28980.1| integrase family protein [Anaerococcus prevotii DSM 20548]
          Length = 329

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 45/300 (15%), Positives = 97/300 (32%), Gaps = 53/300 (17%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRK-------SGDFD-------------------Y 111
           Y KS     L+ N+   ++     +IR         GD +                   +
Sbjct: 16  YLKSIR--GLSSNTIKEYQYDLMLMIRYMIIRRIYYGDEESFNDDFKNIKINRIVNPKFF 73

Query: 112 RKITTKHIRSGV----ESRKHTPSSAIQFLTSMRVLFKWA-VRQEYVAINPCLSVERPKR 166
             +T +   + +      +  + ++  + +++++  +K+     E +  N    +  PK 
Sbjct: 74  ESLTLQDFYAFLSFLDNEKNDSSTTRSRKISAIKSFYKYLFSEIEVIDSNISDKLSNPKI 133

Query: 167 KTEGIRPWTKEDMQQFKSFWS------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220
                   T  + +                +        L +G+R S+     ++ +  +
Sbjct: 134 SQRQPVYLTLNETELLLDTIKNEPNEFLRFRDLAIVFTFLTTGMRLSELVSINMEDIIYD 193

Query: 221 IFSIKTQKTGTIITVELPDGFMKLLAMTPIGK---------ETFFINNDKQKMNATQFSI 271
            F+I   K     TV L +   +LL    + +         +  FI+  K++++      
Sbjct: 194 HFNII-GKGNKERTVYLTNNCRELLDQYILIRNKYIKDLKIDALFISTRKKRISNRAVQS 252

Query: 272 WFKAKATKAGVN---KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGAD 327
                  KAG +    S H +R  +AT+    G      L    G   +   + YT   D
Sbjct: 253 TIDKYLKKAGFDTSVYSTHKLRHTAATLMYKYGNVDIRALKDILGHVNISTTQIYTHLDD 312


>gi|239624491|ref|ZP_04667522.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239520877|gb|EEQ60743.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 281

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 45/258 (17%), Positives = 77/258 (29%), Gaps = 14/258 (5%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
           I +++K       +  +   +       I+     +           G     +  SSA 
Sbjct: 11  ILDFKKYLINMERSARTIDKYCRDVAAFIQYLSPGEMVTREKVIEYKGYLQGSYKVSSAN 70

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
             L ++   F +     Y        V+R     E  R  TKE+  +  +        RL
Sbjct: 71  SMLAALNCFFHYKNWDRYRVS--QFKVQRHLMGGEERR-LTKEEYARLVTTALYLDNQRL 127

Query: 195 AF--EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252
           A   E +  +G+R S+     V+ L      I     G   T+ L +     L       
Sbjct: 128 AMIMETIGNTGIRISELPFITVEALDAGRVEI--YNKGKFRTIFLIEKLRCRLRGYCREN 185

Query: 253 ET----FFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGATAH 305
                  F+ +    +N +      K    KAG+ +     H +R   A           
Sbjct: 186 GLTSGPVFVTSGGMAVNRSNIWAEMKRLCIKAGIPEQKVFPHNLRHLFAYTYYGVDKDLV 245

Query: 306 ELMATYGWKTVDQAETYT 323
            L    G  +V+    YT
Sbjct: 246 HLADILGHSSVETTRIYT 263


>gi|167623715|ref|YP_001674009.1| integrase family protein [Shewanella halifaxensis HAW-EB4]
 gi|167353737|gb|ABZ76350.1| integrase family protein [Shewanella halifaxensis HAW-EB4]
          Length = 358

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/270 (12%), Positives = 91/270 (33%), Gaps = 25/270 (9%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE--SRKHTPSS 132
           + +Y  S     L  +++  +    ++ I  + +     IT K   +  +      TP  
Sbjct: 72  LDKYVTS-----LRESTQRFYRYTLNKYIPNAFEQPVEDITRKEWYAYFDGVEESSTPHM 126

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT---EGIRPWTKEDMQQFKSFW--- 186
           A   +  ++    +   ++ ++ +    +      +    G R  +  +++     +   
Sbjct: 127 ANSLIKKLKTCLNFCKERDLISDHSLNEIRTKSVGSASNTGDRTPSVVEIKAILEEFGRS 186

Query: 187 -SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMK 243
            S  +   +    +L +G RC +      + +     I+++  +K+ T   +  P G   
Sbjct: 187 KSYPTTVNVVRMIVL-TGARCGEVRCMQSKDINFDTGIWTVPKEKSKTNTRILRPLGLKA 245

Query: 244 L------LAMTPIGKETFFIN-NDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSAT 295
           L      +       +  F + + K ++     +   +    +  + + S H  R+  +T
Sbjct: 246 LELVKWQVKTFGGFSDYVFPSASYKNEIGPATINKMCRTIVKRMDIERWSVHDFRRSLST 305

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKG 325
           +  + G   H      G K       Y K 
Sbjct: 306 LLTEDGVPLHITEKMLGHKLGGILSVYNKS 335


>gi|261392181|emb|CAX49693.1| putative prophage integrase [Neisseria meningitidis 8013]
          Length = 363

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 46/297 (15%), Positives = 101/297 (34%), Gaps = 21/297 (7%)

Query: 53  GSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYR 112
           G   ++E          T + + +E+ K    G    ++   ++S    +    G     
Sbjct: 57  GEAKQQEKRERQAAVSNTFRSIAAEWHKHCETGLTGNHAARVWDSLEKDVFPMLGGLPVS 116

Query: 113 KITTKHIRSGVESRKHTPS--SAIQFLTSMRVLFKWAVRQEYVAINPCL-SVERPKRKTE 169
           +I    ++  +E+     +  +A + L  ++ +F +A+R E    NP +  V   K   +
Sbjct: 117 EIKVSQVKEVIEAVAARGALETAGRILQRIKAVFTYAIRTERAENNPAVPLVGLIKAPKQ 176

Query: 170 GIRP-WTKEDMQQFKSFWSEGSQPR---LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI- 224
             +P   + ++ +F          R   +A + ++ + +R  +   A       N     
Sbjct: 177 KHQPALPQSELTEFYRRLMLEQAERQTKIAMQLIMLTFVRNGELRAAEWVEFDLNGAEWS 236

Query: 225 ---KTQKTGTIITVELPDGFMKLLAMTP--IGKETFF---INNDKQKMNATQFSIWFKAK 276
                 K      V L D  ++LLA      G   +    + +  + M+    S      
Sbjct: 237 IPAAKMKMKAPHIVPLADWTLELLAELKEITGHSRYLFPSVKDPDKHMSENILSYLMGRM 296

Query: 277 ATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKT---VDQAETYTKGADRIR 330
             K G+  + HG R  +  +  + G  +  +           V  A   T+   + +
Sbjct: 297 GYK-GI-ATPHGFRSLATDVLNENGFDSDVIERQLAHVEQNKVRAAYHRTEYIPQRK 351


>gi|53713070|ref|YP_099062.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|52215935|dbj|BAD48528.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
          Length = 404

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 45/279 (16%), Positives = 96/279 (34%), Gaps = 23/279 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITT---KHIRSGVESRKHTPSSAIQFLTSMR 141
              A N R +  ++  ++    G F + ++T        S +  R + P++   +L   R
Sbjct: 129 QGTAANYRSARRAF--EMFLDGGPFSFEELTPEVLDRFVSFLRERGNRPNTVSFYLRQWR 186

Query: 142 VLFKWAVRQEYVAIN--PCLSVERPKRKTEGIRPWTKEDMQQFK-----SFWSEGSQPRL 194
            ++  A     V  +  P   +   K +    R  ++E + Q +     +  ++    R 
Sbjct: 187 AIYNRACADHVVFSDQKPFRRLN-LKEEVTSKRAISREKIAQIECIDLTACHADMQLARD 245

Query: 195 AFEFLLYS-GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE 253
            F F  Y+ G+   D C    ++LQ N    K QKTG  + + +      L+        
Sbjct: 246 LFLFSFYTRGMSFVDMCYLNKENLQGNYLRYKRQKTGQELQIRIEKDLRVLIDRYASPLS 305

Query: 254 TFFINNDKQKMNAT-------QFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATA 304
            + +   +             + +   +    +  ++   + +  R   AT++ +     
Sbjct: 306 DYLLPMLRNGDCYQDYRRRQRRLNKLIRELGDRLQLDMPLTFYVARHSWATLAHENDVPV 365

Query: 305 HELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343
             +    G  +      Y    D  RL   N   I+S+ 
Sbjct: 366 SVISDCMGHTSEKTTRIYLDRIDTKRLDQANQLVINSLR 404


>gi|88706780|ref|ZP_01104481.1| prophage integrase [Congregibacter litoralis KT71]
 gi|88698961|gb|EAQ96079.1| prophage integrase [Congregibacter litoralis KT71]
          Length = 399

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/295 (11%), Positives = 82/295 (27%), Gaps = 33/295 (11%)

Query: 59  EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTK 117
           + I     K  T K    ++ +         +   + E      +I   G      I+ +
Sbjct: 74  KQIEQRSAKTPTFKAFADQWMEENR-IGWKPSYINTLEHSLSKHVIPAFGSVPMSAISKE 132

Query: 118 HIRSGVESRKHTPSS----------AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167
            I +        P                +  +R + + A  + +   NP   ++  K  
Sbjct: 133 DILAFRNQLARIPRKDGSVGLSAARINTVMVPLRQIMREASER-FGFDNPYQGIKLLKVP 191

Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI------ 221
              + P+T ++++       E            ++G+R  +      +++          
Sbjct: 192 RTKVEPFTLDEVKAVLDGVREDFHAY--MTVRFFTGMRTGEIHGLKWKYIDFKQRMILVR 249

Query: 222 -----FSIKTQKT-GTIITVELPDGFMKLLAMTPIGK---ETFFINNDKQKMNATQFSI- 271
                 ++   KT  +   + + D     L          +  F     + ++       
Sbjct: 250 ESYVAGAMTDTKTEESARDIPMSDEVYAALKAQHKRTGKLDLVFCTGSGEPLSINNVCKR 309

Query: 272 -WFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
            W+   A      +  +  R  +AT+   AG     +    G        + Y +
Sbjct: 310 VWYPLLALLKIPKRPPYQTRHTAATLWLAAGENPLWVAQILGHSDSAITHKRYAR 364


>gi|283853495|ref|ZP_06370737.1| integrase family protein [Desulfovibrio sp. FW1012B]
 gi|283571120|gb|EFC19138.1| integrase family protein [Desulfovibrio sp. FW1012B]
          Length = 371

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 57/352 (16%), Positives = 113/352 (32%), Gaps = 46/352 (13%)

Query: 29  HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLA 88
           +G R    YP  S    +  +A      +R+ + +P    T    L++    S  +    
Sbjct: 20  NGNRKEKQYPDGSE--KSRRAAERWEEAQRKALKTPEPTVTDSPTLLN---LSNSFLDF- 73

Query: 89  VNSRISFESYFDQI------IRKSG-DFDYRKITTKHIRSGVESRKHTPS--SAIQFLTS 139
           V  R S ++Y +++      I++ G D +   I        +  +    S  +A +    
Sbjct: 74  VKERQSRQTYVEKLAVMTRTIKRFGRDTEIADIQVADAMKFLSDQNRNRSGYAANKERKV 133

Query: 140 MRVLFKWAVRQEYVAINP-----CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
           +   + W  +  Y+   P        V+R   + +      ++D            Q R+
Sbjct: 134 LVTAWGWGKK--YMPGFPDGPCPFQVVDRFPEQRQPRYVPPEDDFWAVDGVAE--GQDRV 189

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQK--TGTIITVELPD------GFMKL 244
                L+   R  +  R     +    N  ++ T+K   G +    +P         +  
Sbjct: 190 MLLTFLFLAARRGEIFRLKWSDIDFAGNTVTLWTRKRAGGDLEADPVPMVGRLKQILLAW 249

Query: 245 LAMTPIGKETFFINNDKQKMNATQFS-------IWFKAKATKAGVNK-SAHGVRKFSATI 296
               PI  E  F+N D+                   +    KAGV +   H +R  +A+I
Sbjct: 250 WEHRPIKSEFVFVNLDETPFCKQYLGLPFTNRQHLMERLCKKAGVREFGFHAIRHLTASI 309

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
               G     + A    K+      Y +         +    + +V+ +  P
Sbjct: 310 MYREGQPVAVIQAVLRHKSPQTTTKYLQSLGLK----QTQEAMEAVMGNRGP 357


>gi|227517376|ref|ZP_03947425.1| bacteriophage integrase [Enterococcus faecalis TX0104]
 gi|229548135|ref|ZP_04436860.1| bacteriophage integrase [Enterococcus faecalis ATCC 29200]
 gi|256958289|ref|ZP_05562460.1| conserved hypothetical protein [Enterococcus faecalis DS5]
 gi|257088127|ref|ZP_05582488.1| conserved hypothetical protein [Enterococcus faecalis D6]
 gi|257091256|ref|ZP_05585617.1| conserved hypothetical protein [Enterococcus faecalis CH188]
 gi|307274411|ref|ZP_07555595.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX2134]
 gi|312905315|ref|ZP_07764430.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0635]
 gi|227075175|gb|EEI13138.1| bacteriophage integrase [Enterococcus faecalis TX0104]
 gi|229306736|gb|EEN72732.1| bacteriophage integrase [Enterococcus faecalis ATCC 29200]
 gi|256948785|gb|EEU65417.1| conserved hypothetical protein [Enterococcus faecalis DS5]
 gi|256996157|gb|EEU83459.1| conserved hypothetical protein [Enterococcus faecalis D6]
 gi|257000068|gb|EEU86588.1| conserved hypothetical protein [Enterococcus faecalis CH188]
 gi|306508921|gb|EFM78007.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX2134]
 gi|310631339|gb|EFQ14622.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0635]
 gi|315026884|gb|EFT38816.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX2137]
 gi|315036577|gb|EFT48509.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0027]
 gi|315162494|gb|EFU06511.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0645]
 gi|315578594|gb|EFU90785.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0630]
          Length = 309

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 44/288 (15%), Positives = 91/288 (31%), Gaps = 44/288 (15%)

Query: 73  WLISEYRKSAHWGSL------AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
            L  EY   + W  L         S   +     ++   +     + +  +  +  +   
Sbjct: 9   QLFHEYF--SEWVELYKVGAIRDISLQKYYIAEQRLAELAPGLKVKHLDRQRYQQLLNDY 66

Query: 127 KHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV----ERPKRKTEGIRPWTKEDMQ 180
             T    + + F   ++     AV +  ++ NP   +    + P+ K        + ++Q
Sbjct: 67  ALTHERQTTMDFHHQLKGAILDAVDEGLISKNPTRKIVIKGKAPRPKKSKF--LNQFEVQ 124

Query: 181 QFKSFWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSIKTQKT--------- 229
                   G Q    +  LL   +GLR S++     +    +   I  +KT         
Sbjct: 125 ALLKELELGEQLNWDWFILLVVKTGLRFSEALALTPKDFDFSKQKITIEKTWNYKNPTGF 184

Query: 230 -----------GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKAT 278
                         I  +    F +L+   P  +  F      +  N+T  +   K    
Sbjct: 185 FQSTKNESSKRKVQIDWQTAMQFSQLIRNMPPMEPIFV---KGRVFNST-INSRLKVLCK 240

Query: 279 KAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
           +A +   + H +R   A++   AG +   +    G  ++    ETY  
Sbjct: 241 RAQIPVITVHSLRHTHASLLLFAGVSIASVATRLGHSSMTTTQETYLH 288


>gi|327383091|gb|AEA54567.1| Type I restriction modification DNA specificity domain protein
           [Lactobacillus casei LC2W]
          Length = 308

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/283 (11%), Positives = 84/283 (29%), Gaps = 43/283 (15%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
            K  I  Y++    G++   +   ++     ++  + D    ++  +  +  +       
Sbjct: 12  FKQWIELYKE----GAVRAVTYQKYQMSHKHLVTLAPDLHMDELKRRTYQELINEF---- 63

Query: 131 SSAIQFLTSMRVLFKW-------AVRQEYVAINPCLSVERPKRKTEGIRP--WTKEDMQQ 181
            +A     +              A+ +  +  +P   V      +   +     + ++ +
Sbjct: 64  -AANHEKQTTLDFHHHLKAAILDALDEGILEQDPTRKVVIKGTVSRVHKVKFLNQHELTK 122

Query: 182 FKSFWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSIKTQKT---------- 229
             +           +  LL   +GLR  ++             ++   KT          
Sbjct: 123 LLALLDLDHGLDWDYFLLLIAKTGLRFGEALGVTPMDFDMAKLTLTINKTWDYKSATGSF 182

Query: 230 ----------GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK 279
                        +  E+   F   +   P  K   F+ + ++  N T   I  +    +
Sbjct: 183 AETKNTASVRKVPLDWEVAMQFATQIKSLPQDKP-IFVTDGQRVYNETANDILERK-CKR 240

Query: 280 AGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
           A +   S HG+R   A++   AG +   +    G   +   + 
Sbjct: 241 ANIPVISIHGLRHTHASLLLYAGVSVGSVARRLGHANMSTTQK 283


>gi|326403137|ref|YP_004283218.1| phage integrase family protein [Acidiphilium multivorum AIU301]
 gi|325049998|dbj|BAJ80336.1| phage integrase family protein [Acidiphilium multivorum AIU301]
          Length = 404

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 46/304 (15%), Positives = 101/304 (33%), Gaps = 28/304 (9%)

Query: 52  TGSTPKREYIN--SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGD 108
            G +P +E     +  K   T      ++ +      +A ++R    S +++ +  K G+
Sbjct: 78  AGKSPSKEKARDKARIKDAETFGAWSEKWLRGYQ---MADSTRDMRRSVYERELKPKFGN 134

Query: 109 FDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
               +IT + +R+  ++   +  P++A+     +  +++WA+ +     NP   V     
Sbjct: 135 QKLVEITHEDLRALTDAIVERGAPATAVHAREVVLQVYRWAIERGQKVENPAELVRPTSI 194

Query: 167 KT--EGIRPWTKEDMQQFKSFWS-EGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221
                  R  T +++     +    G+ P  R A + LL + +R  +   A    +  + 
Sbjct: 195 AKFEPRDRALTTDEIGLMYQYMERIGTTPSIRAAAKLLLLTMVRKRELTDATWSEINFSQ 254

Query: 222 FSIK----TQKTGTIITVELPDGFMKLLAMTPI---GKETFFINNDKQ--KMNATQFSIW 272
                     K  T   V L    + +         G E    +       M+    +  
Sbjct: 255 ALWTIPKERMKRRTPHLVFLSRQALDIFIALKTFAGGSEYVLPSRYDSDLPMSRATLNQV 314

Query: 273 FKAKATKAGVNKS------AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
                  A            H +R+ ++T+  +AG     +      +       Y K  
Sbjct: 315 LTLTYRLAQKEGKHLAKFGPHDLRRTASTLLHEAGYNTDWIEKCLAHEQRGVRAVYNKAE 374

Query: 327 DRIR 330
            R +
Sbjct: 375 YREQ 378


>gi|307291405|ref|ZP_07571289.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0411]
 gi|306497636|gb|EFM67169.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0411]
          Length = 408

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 67/399 (16%), Positives = 123/399 (30%), Gaps = 81/399 (20%)

Query: 13  KERTRHGKIIY-YF----R-KGHGRRIRLPYPHESTFIPAYMSA--LTGSTPKREYINSP 64
               ++G+  + YF    R  G GR+ ++      +   A  +A  + G     E++   
Sbjct: 6   SYTLKNGQERWEYFVSNGRSNGTGRQQKIHKRGFRSHKEALKAAKIIEGQIASEEFVK-E 64

Query: 65  RKKPTTLKW----LISEYRKSAHWGSLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHI 119
             +  T+       I+EY+      ++   SRI +       I    G++   K      
Sbjct: 65  NPQKMTISKFMNIWINEYKN-----NVKEGSRIVYRDAIRMYIDPYIGNYQLNKYKPADH 119

Query: 120 RSGVESR-------KHTPSSAIQFLT----SMRVLFKWAVRQEYVAINPCLSVERP---- 164
           +  + S        K+    +   +     ++   FK A +  YV  NP   VE P    
Sbjct: 120 QKFINSLFTNKELGKNKNGLSYNTVKIVNAALSNAFKKAQKLGYVKSNPTYLVEFPLDKV 179

Query: 165 ---KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY---SGLRCSDSCRAGVQ--H 216
                K + +  +T E    F    +      + + F L     GLR  +          
Sbjct: 180 KEKNNKEKKLEFYTLEQENLFLDT-ARNFDEYMWYVFFLIIFDLGLRKGEVMALRWFNFD 238

Query: 217 LQNNIFSI-------------------------KTQKTGTIITVELPDGFM-------KL 244
            ++NI +                          ++ K    +   + + +         +
Sbjct: 239 FRDNILTFDKQRLYRKERPGQVILDDVKTDAGKRSLKMTNRVRNSVLELYGINYDLTNNV 298

Query: 245 LAMTPIGKETFFINNDKQ----KMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISAD 299
           L MT   K+  FINN  +     +        +     KA + K   H  R  +A     
Sbjct: 299 LPMTKSNKDFLFINNRGKNVGLPIRQRSVDTAWHRIINKAQLPKIRIHDGRHTNAARLRQ 358

Query: 300 AGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSR 337
           AG    ++    G K V   E Y    A+     +    
Sbjct: 359 AGVPLEDIKDMLGHKNVKTTEIYAHVSAEVKERAVNKLE 397


>gi|257078096|ref|ZP_05572457.1| conserved hypothetical protein [Enterococcus faecalis JH1]
 gi|256986126|gb|EEU73428.1| conserved hypothetical protein [Enterococcus faecalis JH1]
          Length = 376

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 44/296 (14%), Positives = 91/296 (30%), Gaps = 43/296 (14%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
            +     YRK    G L+ ++        D   +       +++T +  +  +     T 
Sbjct: 66  FRNWFEVYRK----GKLSQDNDGDIRRAVDFSEKYFPGTKLKELTRQEYQKALNDYGETH 121

Query: 131 SSA--IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW-------TKEDMQQ 181
           ++A   +  T MR   K A+ +  +  +P   V+   +K              +   + +
Sbjct: 122 ATASVKKHHTYMRAALKDALEEGIIHRDPTYRVQAIGKKNPKHEELKYLNYQESIHLVHK 181

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG----------- 230
                      R    F + +G R S+        +     ++K  KT            
Sbjct: 182 ILEGIKPTYTSRFIILFGIATGCRFSEIIGMTWDCIDFKNKTVKVNKTWDYKYTNTFSNT 241

Query: 231 ----TIITVELPDGFMKLLAMTP-------------IGKETFFINNDKQKMNATQFSIWF 273
               +   + + D  + LL                       F+N++ + ++ T  +   
Sbjct: 242 KNYQSKRIITIDDDTLDLLKKLQLHQKEYYLKSGLRNENNLVFLNDNMELVSNTAVNKVL 301

Query: 274 KAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGAD 327
           +    K G    + HG+R   A+I    G     +    G K +    +TY    D
Sbjct: 302 RKFCRKIGTKELTCHGLRHTHASIMLYKGINIKYVSRRLGHKDIVTTLQTYQHILD 357


>gi|194446198|ref|YP_002043286.1| site-specific recombinase, phage integrase family [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
 gi|194404861|gb|ACF65083.1| site-specific recombinase, phage integrase family [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
          Length = 326

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 45/307 (14%), Positives = 99/307 (32%), Gaps = 23/307 (7%)

Query: 26  RKGHGRRIRLPYPHESTFI--PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAH 83
           R   G+RIR  +  ++  +    Y  A       ++     R    TL  L+  + K  H
Sbjct: 18  RGRDGKRIRRKFERKAEAVAFERYTIA----NASQKEWAGQRADRRTLAELLDVWWK-YH 72

Query: 84  WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK---HIRSGVESRKHTPSSAIQFLTSM 140
             +    ++    ++  + I   GD    +++ +     RS       + ++  + +  +
Sbjct: 73  GQNHEHGTKEF--NHLLKTISGIGDMPVSRVSKRALMDYRSTRLRDGISAATINRDMYRL 130

Query: 141 RVLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199
             +F   ++  E+   +P   +         +    K ++++  S         L     
Sbjct: 131 SGMFTKLIQLDEFSGQHPIHGLPPLAEANPEMTFLEKSEIEKLLSVLV--GDDLLVALLC 188

Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN 259
           L +G R ++        + +   +    K G   TV +     K +      K       
Sbjct: 189 LSTGGRWTEVATLKPAQITSCRVTFLKTKNGKKRTVPISAELEKKVKEEASAKLF----- 243

Query: 260 DKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
              K++  +F    +        N++ H +R   A+     G     L    G  ++ Q 
Sbjct: 244 ---KVDYEKFCGILRRVKPDIPPNQATHILRHTFASHFMMNGGNIIALQQILGHASIQQT 300

Query: 320 ETYTKGA 326
             Y   A
Sbjct: 301 MAYAHLA 307


>gi|315033819|gb|EFT45751.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0017]
          Length = 408

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 64/398 (16%), Positives = 123/398 (30%), Gaps = 79/398 (19%)

Query: 13  KERTRHGKIIY-YF----R-KGHGRRIRLPYPHESTFIPAYMSA--LTGSTPKREYINSP 64
             + ++G+  + YF    R  G GR+ ++      T   A  +A  + G     E++   
Sbjct: 6   SYKLKNGQERWEYFVSNGRSNGTGRQQKIHKRGFRTHKEALKAAKIIEGQIASEEFVK-E 64

Query: 65  RKKPTTLKW----LISEYRKSAHWGSLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHI 119
             +  T+       I+EY+      ++   SRI +       I    G++   K      
Sbjct: 65  NPQKMTISKFMNIWINEYKN-----NVKEGSRIVYRDAIRMYIDPYIGNYQLNKYKPADH 119

Query: 120 RSGVESR-------KHTPSSAIQFLT----SMRVLFKWAVRQEYVAINPCLSVERP---- 164
           +  + S        K+    +   +     ++   FK A +  YV  NP   VE P    
Sbjct: 120 QKFINSLFTNKELGKNKNGLSYNTVKIVNAALSNAFKKAQKLGYVKSNPTYLVEFPLDKV 179

Query: 165 -----KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HL 217
                K K        +E++    +   +     + F  +   GLR  +           
Sbjct: 180 KEKTNKEKKLEFYTLEQENLFLDTARNFDEYMWYVFFLIIFDLGLRKGEVMALRWFNFDF 239

Query: 218 QNNIFSI-------------------------KTQKTGTIITVELPDGFM-------KLL 245
           ++NI +                          ++ K    +   + + +         +L
Sbjct: 240 RDNILTFDKQRLYRKERPGQVILDDVKTDAGKRSLKMTNRVRNSVLELYSINYDLTSNVL 299

Query: 246 AMTPIGKETFFINNDKQ----KMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADA 300
            MT   ++  FIN+  +     +        +     KA + K   H  R  +A     A
Sbjct: 300 PMTNSNQDFLFINHRGKNVGLPIRQRSVDTAWHRIIQKANLPKIRIHDGRHTNAARLRQA 359

Query: 301 GATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSR 337
           G    ++    G K V   E Y    A+     +    
Sbjct: 360 GVPLEDIKDMLGHKNVKTTEIYAHVSAEVKERAVNKLE 397


>gi|310286587|ref|YP_003937845.1| site-specific recombinase, phage integrase family [Bifidobacterium
           bifidum S17]
 gi|309250523|gb|ADO52271.1| site-specific recombinase, phage integrase family [Bifidobacterium
           bifidum S17]
          Length = 416

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 57/373 (15%), Positives = 106/373 (28%), Gaps = 65/373 (17%)

Query: 15  RTRHGKIIYYF---RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
           R ++G   Y     R     R R       T   A                 P  K   L
Sbjct: 16  RDKNGTWHYRRELDRDPATGRPRRIEAKGRTKAEARTRFDAKVAEMERTGLMPGAKSPLL 75

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
           K     +        +   +  +            G    + +T +HIR  + +R     
Sbjct: 76  KDYCERWLADYR-TRVKPTTYRTRAGRIRACCEVIGHVRLKDLTAEHIR--LCTRTLGAR 132

Query: 132 SAIQFLT----SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            A   L     S++++   A  +E + I+PC  V  P+ +   +     E  ++     +
Sbjct: 133 LASSTLKDHYVSLKMVLDQAELEELIPIDPCRRVRPPRVEQRNVDVLGPEQPKRMIEAAA 192

Query: 188 EGSQPR--------------LAFEFLLYSGLRCSDSCRAGV--QHLQNNI--FSIKTQ-- 227
              Q R              L FE    +G+R  +          L++      ++ Q  
Sbjct: 193 SMPQARRGKRRSDEDLEMWALLFELAFETGMREGERYALMPYELELRDGQPGIHVRQQIQ 252

Query: 228 KTGTIITVELPDGF----------------MKLLAMTPIGKETF---------------- 255
           + G    V +P+                         PIG + +                
Sbjct: 253 RYGKPENVVMPNWLEATHITGTLWLTTPKTRAAERFVPIGTQLWNRLWGWIRANNIGMRD 312

Query: 256 --FINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYG 312
             F +     + ++     +      AG+ +   H  R + AT++A A       +A  G
Sbjct: 313 FVFTSARGNPVCSSTERYQWCKALKAAGLPQVKIHSARHWMATMAARANMPDDARIAVMG 372

Query: 313 WKTVDQAETYTKG 325
             ++     YT  
Sbjct: 373 HTSMQMTMRYTHR 385


>gi|291541569|emb|CBL14679.1| Site-specific recombinase XerD [Ruminococcus bromii L2-63]
          Length = 399

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 46/317 (14%), Positives = 93/317 (29%), Gaps = 68/317 (21%)

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----- 123
             L  L   Y+KS     L+     ++  Y         D    K+     +  +     
Sbjct: 66  GKLVNLWLAYKKSI----LSEGQYKTYSIYLSHFSA-LNDRPINKLVKSDFQQIILDEYA 120

Query: 124 -ESRKHTPSSAIQ---FLTSMRVLFKWAVRQEYVAINPCLSVERPK-RKTEGIRPWTKED 178
             S    P++      +  ++R +F +A+    +  +P   +E P+  KT   R  T ++
Sbjct: 121 CNSHTGKPTAKKTLRDWRGAVRQVFNYAIENRVIEFSPAQYIEIPRDAKTSERRALTAQE 180

Query: 179 MQQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ------- 227
                  W   ++ R  L    ++++GLR  +      + +        +  +       
Sbjct: 181 -----QLWVISTEHRAQLPAMIMMFAGLRLGECLGLQWRDINLTERTIDVHQKLVTKGKA 235

Query: 228 ------KT--GTIITVELPDGFMKLLAMTPIGK--ETFFINNDKQKMNATQFSIWFKAKA 277
                 KT  G     ++P   +  L   P  K  +    +     M+ T +   + +  
Sbjct: 236 HIEQGAKTISGVRTVTDVPKILIDFLKKQPEHKPDDFVVTSTKGTLMSDTAWRRLWNSYM 295

Query: 278 TKAGVNK--------------------------SAHGVRKFSATISADAGATAHELMATY 311
               +                            +AH +R   AT     G   H +    
Sbjct: 296 ADLNIKYGDFSDYERQPKSKYDPKGVPFVIDRFTAHSLRHTCATNLLYTGHELHYVQKQL 355

Query: 312 GWKTVDQA-ETYTKGAD 327
           G        + YT   +
Sbjct: 356 GHAKPSTTLDIYTHYVE 372


>gi|256839902|ref|ZP_05545411.1| tyrosine type site-specific recombinase [Parabacteroides sp. D13]
 gi|256738832|gb|EEU52157.1| tyrosine type site-specific recombinase [Parabacteroides sp. D13]
          Length = 414

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 44/280 (15%), Positives = 93/280 (33%), Gaps = 36/280 (12%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGD-------FDYRKITTKHIRSGVESR-KHTPSSAIQF 136
           G  +V +  ++ S  +++    GD        D  +  T    + +ESR    P +   +
Sbjct: 23  GQRSVQTLENYHSSINKVKEFVGDGWERLTVEDITRCWTDRFTTWLESRHGDKPQTVDFY 82

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI----RPWTKEDMQQFKS---FWSEG 189
           L + R L+  A+    ++ N           T G     R   KE++Q+  S     +  
Sbjct: 83  LRTFRALYGHALA---LSDNKTDGKPFGGHHTGGSFPAKRALHKEEVQRLLSPALRQTLP 139

Query: 190 SQPRLAFEFLLYS----GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
              R A + LL+     G+   D      + + +        KTG  I VE+     +++
Sbjct: 140 ENRREALDVLLFILYARGMVFKDVYNLTRRMVTDRHIRYLRSKTGVPIDVEVVPELEEIM 199

Query: 246 AMTPIGKETF---FINN-----DKQKMNATQFSIWFKAKATKAG------VNKSAHGVRK 291
                    F   F++        ++++             + G      V  + + +R 
Sbjct: 200 KRYYREDSPFVFPFLHEVRKGCPGKELSEESALRRINRSTREIGRKTGLSVPLTTYVLRH 259

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
             AT+  +       +    G  ++   + Y       ++
Sbjct: 260 TWATLMLEDCQPVELISQCMGHSSIRTTQIYLSRISSRKV 299


>gi|253689521|ref|YP_003018711.1| integrase family protein [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251756099|gb|ACT14175.1| integrase family protein [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 352

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 41/281 (14%), Positives = 78/281 (27%), Gaps = 31/281 (11%)

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--------FDYRKITT 116
           ++    L  LI  +    +    A+++  S       I    GD         D+     
Sbjct: 55  KEDRRNLSELIELW---NNLHGQALSASKSRMGKLRIICNGLGDPVASKLTAKDWAHYRD 111

Query: 117 KHIRSGVES--------RKHTPSSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRK 167
           K +R  +++            P +  +    +  +F    R   +   NP   +   K  
Sbjct: 112 KRLRGEIDNGYHSDPKMWIAKPITVNREHQYLYAMFNELKRLGEWTLPNPLEGMRIFKEA 171

Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225
              +   T   +QQ         +  L    +  L +G R S++       L     +  
Sbjct: 172 DREMSWLTTSQIQQLLDACERYGKIYLTRIVKVCLATGARWSEAEGLTRSQLSPYKLTFF 231

Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS 285
             K     TV +P      L+      + F       +     F         +    ++
Sbjct: 232 KTKGKKNRTVPIPRWLHDELSEL--QGKMF-------QPCYQDFVKMLALTNIELIEGQN 282

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            H +R   A+     G     L    G   + +   Y   A
Sbjct: 283 THVLRHTFASHFMMNGGNILVLQRILGHANIRETMRYAHFA 323


>gi|149017859|ref|ZP_01834318.1| prophage Sa05, site-specific recombinase, phage integrase family
           protein [Streptococcus pneumoniae SP23-BS72]
 gi|147931423|gb|EDK82401.1| prophage Sa05, site-specific recombinase, phage integrase family
           protein [Streptococcus pneumoniae SP23-BS72]
          Length = 388

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 49/332 (14%), Positives = 111/332 (33%), Gaps = 56/332 (16%)

Query: 59  EYINSPRKKPTTLKW---LISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKI 114
           +   S R+K +T+K    L + + +S    ++  N++ +     D  I+   G +   K+
Sbjct: 55  QKAGSTRQKASTIKNYQELANLWLESYK-NTVKPNTQDNVRKLIDNHILPIFGAYKLDKL 113

Query: 115 TTKHIRSGVESRKHTPSS--------AIQFLTSMRVLFKWAVRQEYVAINPCLSVERP-- 164
           TT  I+S +       +           +     + + ++ V  + +  NP   V  P  
Sbjct: 114 TTPLIQSIINELADKTNRGEKGAFLHYDKIHALNKRILQYGVTMQAIPSNPARDVVLPRN 173

Query: 165 --KRKTEGIRPWTKEDMQQFKSFWSEGSQPR-------LAFEFLLYSGLRCSDSCRAGVQ 215
             K K + ++ +  +++++F  +       R         ++FLL +G R +++      
Sbjct: 174 TQKAKRKKVKHFENQELKKFLGYLDNLDSDRYRYYYETTLYKFLLATGCRINEALALSWS 233

Query: 216 HLQNNIFSIKTQKTGTI-ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274
            +  +   +   KT    + +  P        +         +   K +     + I  +
Sbjct: 234 DIDLDNAVVHVTKTLNRDLEINSPKSKASYRDIDIDQATVSMLKQYKLRQTKEAWKIGQR 293

Query: 275 A------------------------KATKAGVNKSAHGVRKFSATISADAGATAHELMAT 310
                                           N   HG R   A++  ++G    EL   
Sbjct: 294 ESVVFSDFIHEYPSSSRLKRRLQTHFKRADVPNIGFHGFRHTHASLLLNSGIPYKELQYR 353

Query: 311 YGWKTVDQA-ETYTKGADRIRLGIKNSRRISS 341
            G  T+    + Y+       L  +N+++  S
Sbjct: 354 LGHSTLSMTMDIYSH------LSKENAKKAVS 379


>gi|119952620|ref|YP_950401.1| phage integrase family protein [Arthrobacter aurescens TC1]
 gi|119951750|gb|ABM10659.1| phage integrase family domain protein [Arthrobacter aurescens TC1]
          Length = 326

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 44/269 (16%), Positives = 77/269 (28%), Gaps = 37/269 (13%)

Query: 88  AVNSRISFESYFD-QIIRKSGDFDYRKI---TTKHIRSGVESRKHTPSSAIQFLTSMRVL 143
           +  +  +++   D  I    G     +           G+ +    P S       +   
Sbjct: 34  SPGTIRTYQRILDLHIQNTIGHIPIDEFGYREDMRWIKGLSAEGIAPKSIHNMHGLLSAA 93

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIR--PWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201
              A    YV+ NPC  V  P  +  G      T  +              +   +FL+ 
Sbjct: 94  MTTAELLGYVSANPCRRVPLPTVERAGDEGMFLTHAEFGLLIEC--MHEPYKTLVQFLVM 151

Query: 202 SGLRCSDSCRAGVQHLQNN------------------IFSIKTQKTGT-IITVELPDGFM 242
           +G R  ++    V  +                      + I   KTG    T+ L    +
Sbjct: 152 TGARFGEATALRVADIDLRSTPPTARINKAWKRDAQSGYYIGPTKTGAGKRTIGLNPALV 211

Query: 243 KLLA---MTPIGKETFFINNDKQKMNATQFS--IWF--KAKATKAGVNKSA--HGVRKFS 293
            LL     +  G E  F      +++   F    W      A   G+ K+   H +R   
Sbjct: 212 NLLVPLVASRPGSELLFTTAQGHRVSHKPFWQHHWVPTVLAARARGLTKTPRIHDLRHTH 271

Query: 294 ATISADAGA-TAHELMATYGWKTVDQAET 321
           A+     G  +   +    G  +V   E 
Sbjct: 272 ASWLIQDGVLSLFAISRRLGHASVRTTEQ 300


>gi|186472095|ref|YP_001859437.1| integrase family protein [Burkholderia phymatum STM815]
 gi|184194427|gb|ACC72391.1| integrase family protein [Burkholderia phymatum STM815]
          Length = 434

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 50/316 (15%), Positives = 104/316 (32%), Gaps = 35/316 (11%)

Query: 45  PAYMSALTGSTPKREYINSPRKKP--TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ- 101
            A      G +P +  +    +     T    + +Y   A    LA ++R   +S +D+ 
Sbjct: 87  RARRQVEQGVSPSKSKVEKRVEAADAMTFGKWVEKYFAEAT---LAESTRAMRKSVYDRN 143

Query: 102 IIRKSGDFDYRKITTKHIRSGVESRKHTPSSA--IQFLTSMRVLFKWAVRQEYVAINPCL 159
           +  + G     +IT   +    E  K   ++A  +Q    +  ++++   +     NP  
Sbjct: 144 LAAEFGRLTLEEITPSRLLMRCEKIKERGAAAPAVQARDIVLQVYRFVQARGLRVANPAE 203

Query: 160 SVERPKRKT--EGIRPWTKEDMQQFKS---FWSEGSQPRLAFEFLLYSGLRCSDSCRAGV 214
            +      T     R  T  ++  F             RLA +F+L + +R S+   A  
Sbjct: 204 DIRPSAIATFKPRDRALTPGEIHMFFKALERTPTLPTLRLAVKFMLLTMVRKSEFILATW 263

Query: 215 QHLQNNIFSIK----TQKTGTIITVELPDGFMKLLAMTPI--GKETFFINNDKQ-----K 263
             +  N           K G    V L    + +L       G  ++   +  +      
Sbjct: 264 DEVDFNAAIWTIPKDRMKGGRPHNVYLSQQALDILVTFKTCFGASSYL--HPGRYESELP 321

Query: 264 MNATQFSIWF----KAKATKAGVNK---SAHGVRKFSATISADAGATAHELMATYGWKTV 316
           ++A   +       +        +    S H +R+ ++T   +AG  +  +      +  
Sbjct: 322 ISAATLNRVIDSAVRLIRESGAPDFESFSVHDLRRTASTQLHEAGFNSDWIEKCLAHEQR 381

Query: 317 DQAETYTKG--ADRIR 330
                Y K   A++ R
Sbjct: 382 GVRAVYNKAEYAEQRR 397


>gi|315223379|ref|ZP_07865237.1| integrase [Capnocytophaga ochracea F0287]
 gi|314946654|gb|EFS98644.1| integrase [Capnocytophaga ochracea F0287]
          Length = 411

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/281 (12%), Positives = 91/281 (32%), Gaps = 34/281 (12%)

Query: 90  NSRISFESYFDQIIRKS------GDFDYRKITTKHIRSG----VESRKHTPSSAIQFLTS 139
           ++   +E+ +  +           D  ++++T   I         ++  T ++   ++  
Sbjct: 136 STLNKYENVYTHLSEFIQYKYHRSDISFKELTEDFINDFDFYLRVNKSLTHNTIWVYMMP 195

Query: 140 MRVLFKWAVRQEYVAINPCLS-VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEF 198
           +  + + A+ +  +  NP  + +   + K  G     +E+++    +  + +   L  + 
Sbjct: 196 LCKMVEIAIDKGIIYRNPFKNYISSMEEKDRGY--LLREEVETLLQYHPKSASAELVRDL 253

Query: 199 LLY---SGLRCSDSCRAGVQHL-----QNNIFSIKTQKTGTIITVELPDGFMKLLAM--T 248
            ++   +G    D  +    HL      N     + QK+     V L D   K++     
Sbjct: 254 FVFSCFTGFSYIDIKQLKKSHLQSFFDGNKWLIKRRQKSDVPCNVRLLDIAEKIIEKYEG 313

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV----NKSAHGVRKFSATISADAGATA 304
               E  F        +    ++  K       +      S H  R    T+    G   
Sbjct: 314 TTRTEALFPT-----PSNANCNLLIKKMMKDCNIIREKPISFHWARHTFGTLFLTEGVPL 368

Query: 305 HELMATYGWKTVDQAETYTKGADRI--RLGIKNSRRISSVV 343
             +    G K +   + Y K  +    +     + R+ ++ 
Sbjct: 369 ESVSKMMGHKNIKTTQIYAKITNEKISKDMEIAAERLKNLK 409


>gi|255316601|ref|ZP_05358184.1| integrase/recombinase, putative [Clostridium difficile QCD-76w55]
          Length = 269

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 42/269 (15%), Positives = 95/269 (35%), Gaps = 20/269 (7%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF 136
           E+ KS     L+ N++ +++    Q +   G  D  K   K  +  +    ++  +  + 
Sbjct: 9   EFEKSI--QQLSKNTKYNYKLDIKQFLNIYGHQDINKALLKKYKDEIIEN-YSIKTVNRK 65

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE--GSQPRL 194
           + S+    ++   +      P   V + + +T      T E+++   +   E    + + 
Sbjct: 66  INSLNAYLRF---KNINMHVP---VAKIQNQTFIDDMLTNEEVRLMLNKSIELNDLRAKA 119

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF----MKLLAMTPI 250
               L Y+G R S+  +  V+ +Q +   IK  K      + +P        + +    +
Sbjct: 120 IMLGLFYTGARVSELLQFKVKSIQKDEIMIK-GKGSKYRKILIPSVLNNAFQEYVDNERV 178

Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGATAHEL 307
               F  +  +  ++ ++     K  A  A +N+     H  R          G +   +
Sbjct: 179 DNTQFLFSGQRGVLSRSEVFRILKKYALLANINEDSVYPHAFRHLFTKNLDKKGVSYSAI 238

Query: 308 MATYGWKTVDQAETYTKGADRIRLGIKNS 336
               G   +   + Y + + R  L   NS
Sbjct: 239 KQLLGHA-LSTTDIYMQLSKRELLEEINS 266


>gi|239625133|ref|ZP_04668164.1| site-specific recombinase [Clostridiales bacterium 1_7_47_FAA]
 gi|239519363|gb|EEQ59229.1| site-specific recombinase [Clostridiales bacterium 1_7_47FAA]
          Length = 420

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 48/328 (14%), Positives = 105/328 (32%), Gaps = 68/328 (20%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI----------- 119
             W   E+ +S    ++  ++  S+ S    I +  G  +Y+ +  + +           
Sbjct: 72  FAW---EWLRSKE-DAIEGSTYDSYYSNVQHIEQFFGKEEYKDLYVEDLTCDVIEKFYIF 127

Query: 120 ---RSGVESRK--HTPSSAIQFL----TSMRVLFKWAVRQEYV------AINPCLSVERP 164
                 +  RK    P  + +++     +++ +  +A  ++ +        NP   V+ P
Sbjct: 128 LLKYGKLVKRKNDDDPGLSRKYVCEISKNLKAMLDYAHDKKVIFSNKDENPNPARLVKVP 187

Query: 165 KRKTE--GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-- 220
           K++           ED   F +        +  F   L+ GLR S++     + +     
Sbjct: 188 KKRKTQVEFSYLDDEDSAIFLNAIKGHVLEQ-YFIITLFYGLRRSEALGLRWKAINLKKR 246

Query: 221 --IFSIKTQKTGTIIT------------VELPDGFMKLLAMTPI--------------GK 252
             +      K    I               +PD   +LL                     
Sbjct: 247 VLVIKHTVVKNRRRIEKDRTKNDESHREYPIPDFVYELLTGILQKQRENRRLFGDEYFDS 306

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATK-AGVN--KSAHGVRKFSATISADAGATAHELMA 309
           +  F  +D +  +    +  FK   T+  G++     H +R    T+ A  G T  E+  
Sbjct: 307 DYVFTWDDGRPFSTDYPTKTFKKIVTRTEGLDENLRLHDLRASCVTLLAQEGYTLKEIQK 366

Query: 310 TYGWK--TVDQAETYTKGADRIRLGIKN 335
             G    + +  + Y +   +++  I  
Sbjct: 367 WIGHAENSEETLKVYMRAKSKVKSNIGA 394


>gi|208434593|ref|YP_002266259.1| integrase-recombinase protein [Helicobacter pylori G27]
 gi|208432522|gb|ACI27393.1| integrase-recombinase protein [Helicobacter pylori G27]
          Length = 363

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 26/190 (13%), Positives = 66/190 (34%), Gaps = 22/190 (11%)

Query: 167 KTEGIRPWTKEDMQQFKS-------FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-- 217
             +       E++++F              ++ RL  + ++++G+R +++ +  ++    
Sbjct: 169 GNKLPTHLNNEELEKFLEGIDKIEMSAKVRARNRLLIKIIVFTGMRSNEALQLKIKDFTL 228

Query: 218 QNNIFSIKTQKTGTIITVELPDG------FMKLL---AMTPIGKETFFINNDKQKMNATQ 268
           +N  ++I  +  G      +           + L    + P+  +  F N     +    
Sbjct: 229 ENGCYTILIKGKGDKYRAVMLKAFHIESLLKEWLIERELYPVKNDLLFCNQKGNALTQAY 288

Query: 269 FSIWFKAKATKAGVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
                +     AG+ +    AH +R   AT+          +    G  +++ +  YT  
Sbjct: 289 LYKQVERIINFAGLRREKNGAHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTH- 347

Query: 326 ADRIRLGIKN 335
            D+ RL    
Sbjct: 348 FDKERLKEAA 357


>gi|120603820|ref|YP_968220.1| phage integrase family protein [Desulfovibrio vulgaris DP4]
 gi|120564049|gb|ABM29793.1| phage integrase family protein [Desulfovibrio vulgaris DP4]
          Length = 356

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 50/345 (14%), Positives = 107/345 (31%), Gaps = 27/345 (7%)

Query: 16  TRHGKIIYYFRKGHGRRIRLPY----PHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
            ++G     FR       R  Y    PH          A            +PR+  T L
Sbjct: 6   KKNGTWYVAFRVAGEPHPRREYFGVGPHAHQ-QALIRDAEIKLQRVSGAAPAPRRGSTYL 64

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR--KH 128
             +   Y         +    I    + +  I+          +    I + V+ +    
Sbjct: 65  DAVAQAYIIDRKTAGASRRWLIEITGFLNNHILPALSTTPLDNLRYTDIIALVDKKWGNR 124

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           T ++  ++L  ++ LF++ V   +   NP     + K     +R  T E ++   +  + 
Sbjct: 125 TLATRQRYLGYLKALFRFGVEHGFTKNNPLSKWRKTKEPKRNLR-LTLEGLELILAHAAP 183

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT----IITVELPDGFMKL 244
             +  L  E+ + +    ++        +     +I  + T T         +P+   +L
Sbjct: 184 HLRWALEVEWEIGTRPGPTELFDLKWDDVDFERCTILVRGTKTHEANRTLPIMPEFRDRL 243

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302
             +       + I    + +     +   +    +AG+      + +R   AT+    G+
Sbjct: 244 QKVMREQGGEYIITYKGKPVLR--MNTALRGACRRAGLPYHVRMYDIRHLFATVMLANGS 301

Query: 303 TAHELMATYGWKTVDQAE-TYTKG---------ADRIRLGIKNSR 337
               +    G  T+   +  Y            A R RL  + +R
Sbjct: 302 DLAAVSKLLGHSTIATTQAHYYHVLKGEMSRALATRPRLQQQGTR 346


>gi|119945130|ref|YP_942810.1| integron integrase [Psychromonas ingrahamii 37]
 gi|119863734|gb|ABM03211.1| integron integrase [Psychromonas ingrahamii 37]
          Length = 324

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 42/302 (13%), Positives = 85/302 (28%), Gaps = 65/302 (21%)

Query: 80  KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHTPSSAIQ 135
           +S      A  +  ++  +    I  +      +     + + +     S+K  P +   
Sbjct: 11  ESMRVKFYAEKTIKAYIYWIKSYIYFNNKKHPFECHNAEVEAFLSYLANSKKVAPKTQAL 70

Query: 136 FLTSMRVLFKWAVRQEYVAINP---CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
            L ++  L+     +E++  NP    L+ +R   + +     T +++       S     
Sbjct: 71  ALNALVYLY-----REFLD-NPLTLSLNFKRTNTQPKLPIVLTIDEVSLLLKSLSS--SV 122

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLAMTPI 250
            L    L  SGLR  ++    +Q +  +  SI     K G   +V L    ++ L     
Sbjct: 123 TLPCYLLYGSGLRLMEAVNLRIQDINFDYLSINIWQGKGGKHRSVTLAPELIESLQNQIT 182

Query: 251 GKETFF----------------------------------------------INNDKQKM 264
               ++                                               N  +  M
Sbjct: 183 KVNLYYQQDMQRTDYQGVYLPHALAGKYPNAAKELKWHYLFPSTQLSFEPGTTNLRRHHM 242

Query: 265 NATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           + +      K  A      K  + H +R   AT     G     +    G   +   + Y
Sbjct: 243 HESNIQKAVKNAARTLDFKKQVTCHTLRHSFATHLLQRGTDIRTVQEQLGHTDLRTTQIY 302

Query: 323 TK 324
           T 
Sbjct: 303 TH 304


>gi|150007390|ref|YP_001302133.1| integrase [Parabacteroides distasonis ATCC 8503]
 gi|149935814|gb|ABR42511.1| integrase [Parabacteroides distasonis ATCC 8503]
          Length = 248

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/227 (15%), Positives = 76/227 (33%), Gaps = 20/227 (8%)

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK-----SFW 186
           +    L  ++ + + A ++ Y           PK+     R  ++E  ++ +     ++ 
Sbjct: 23  TVRHHLAILKKICRLAYKEGYADRIHFQHFTLPKKTETTPRALSRESFERIRDVEIPAYR 82

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVELPDGF 241
                 R  F F  Y+G+  +D      ++L  +         + +K     +V+L    
Sbjct: 83  KSHILARDMFLFGCYTGVCYADVVSITHENLYTDEDGALWLKYRRKKNELRASVKLLPEA 142

Query: 242 MKLLAMTPIGK-ETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATIS- 297
           + L+     G  +T F        +        KA A  AG+      H  R   A++  
Sbjct: 143 IALIEKYHSGDRDTLFPLL---HWS--NLRRHMKALAALAGIKDDLCYHQARHSFASLIT 197

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
            +AG     +    G   +   + Y +     +L     + I +  D
Sbjct: 198 LEAGVPIETISRMLGHSDISTTQVYAR-VSPKKLFEDMDKFIEATKD 243


>gi|83594645|ref|YP_428397.1| phage integrase [Rhodospirillum rubrum ATCC 11170]
 gi|83577559|gb|ABC24110.1| Phage integrase [Rhodospirillum rubrum ATCC 11170]
          Length = 566

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 50/289 (17%), Positives = 102/289 (35%), Gaps = 39/289 (13%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLT---SMRVLF 144
           A  S + +++   +     GD     IT   +    +S      +A   L    +++   
Sbjct: 264 AKRSLMEWDTAIRRFTALYGDKPVESITKAEVVEFKDSLLQQGKAAATVLKQVGAIKSTL 323

Query: 145 KWAVRQEYVAINPCLSVE-RPKRKTEGIR-PWTKEDMQQFKS--FWSEGSQPRL------ 194
           ++AV    +++NP   V+   KR +E  R P+  ED++   S   ++ G +P        
Sbjct: 324 QYAVDNGKLSVNPATGVKVAGKRASEVRRLPYDAEDLKAIFSSPVFTCGDRPLAGSGEAS 383

Query: 195 -AF-EFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQKT----------GTIITVELPDGF 241
                  L++G R ++  +  V  ++  +        T          G+   V L    
Sbjct: 384 FWLPLLALFTGARLNEIGQILVSDVRELDGIHYLDLNTEGEGKSLKNEGSRRKVPLHPEI 443

Query: 242 MKLLAMTPIGKETFFINNDKQKMNA----------TQFSIWFKAKATKAGVNKS---AHG 288
           ++L  +  + K+   + +D +  +             FS W+   A + G+ K     H 
Sbjct: 444 IRLGFLDYVRKQGESLGSDSRVFDKLEPNSNGVLTANFSKWWGRYARENGIAKGQKVFHS 503

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
            R        ++        A  G    +    Y +G    RLG + ++
Sbjct: 504 FRHSFKDACRESSLPQDIHDALTGHSPNNVGGRYGQGFTVRRLGEEMAK 552


>gi|265753035|ref|ZP_06088604.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_33FAA]
 gi|263236221|gb|EEZ21716.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_33FAA]
          Length = 411

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 41/217 (18%), Positives = 81/217 (37%), Gaps = 22/217 (10%)

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKT-EGIRPWTKEDMQQFKSFWSEGSQPRLAFEF 198
           +R +   A+  E++  +P    E  K +T  G    TKE+++       + ++  L  + 
Sbjct: 192 LRTMVFIAINNEWLTRDPFREYEIKKEETTRGF--LTKEEIRMLMDGKLKNAKQELYRDL 249

Query: 199 LLY---SGLRCSDSCRAGVQHLQN-----NIFSIKTQKTGTIITVELPDGFMKLL--AMT 248
            L+   +GL  SD      ++++         +I  QKTG    + L D   K++     
Sbjct: 250 YLFCAFTGLSFSDMRNLREENVRTYFDNHEWININRQKTGVESNIRLLDLPRKIIEKYRG 309

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSAT-ISADAGATAH 305
             G    F                 +A A + G+ K  + H  R  +AT +    G    
Sbjct: 310 LCGDGRIFPVPH-----YMTCLYGIRAVAKRCGITKHLTWHQSRHTAATTVFLSNGVPIE 364

Query: 306 ELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
            + +  G K++   + Y K   + +L       ++ +
Sbjct: 365 TVSSMLGHKSIKTTQIYAK-ITKEKLNQDMENLVARL 400


>gi|256159368|ref|ZP_05457151.1| Phage integrase [Brucella ceti M490/95/1]
 gi|256254665|ref|ZP_05460201.1| Phage integrase [Brucella ceti B1/94]
 gi|261221841|ref|ZP_05936122.1| phage integrase [Brucella ceti B1/94]
 gi|265997806|ref|ZP_06110363.1| phage integrase [Brucella ceti M490/95/1]
 gi|260920425|gb|EEX87078.1| phage integrase [Brucella ceti B1/94]
 gi|262552274|gb|EEZ08264.1| phage integrase [Brucella ceti M490/95/1]
          Length = 308

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 79/239 (33%), Gaps = 12/239 (5%)

Query: 93  ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEY 152
            SF    D+I++ +    + +     I   +  R ++ ++  + + ++  L + A +   
Sbjct: 63  RSFLGEIDEILKGARFSGFDQEMLDSIIGTLRERGNSNATINRKMAALSKLLRKAHKMGD 122

Query: 153 VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY-SGLRCSDSCR 211
           +  N    + R K +   IR   +E+ ++  +      +        L  +G R  ++  
Sbjct: 123 I-FNLPEFI-RQKERVGRIRFLEQEEEKRLFAAIKSRCEDSYRLSVFLVDTGCRLGEAIG 180

Query: 212 AGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI 271
                +Q    +    K+    TV L     K   + P  +    +      +N  +F  
Sbjct: 181 LTWNDIQEQRVTFWVTKSNRSRTVPLTRRARKASHI-PRER----LKGPFSMLNQVRFRQ 235

Query: 272 WFKAKATKAGVNKS----AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            +     + G+        H +R   A+           +    G +T+     Y   A
Sbjct: 236 IWNEAKAEVGLGADDQIVPHILRHTCASRLVRGDIDIRRVQMWLGHQTLQMTMRYAHLA 294


>gi|241992588|gb|ACS73646.1| IntI [uncultured bacterium]
 gi|241992595|gb|ACS73651.1| IntI [uncultured bacterium]
 gi|241992630|gb|ACS73675.1| IntI [uncultured bacterium]
          Length = 316

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/306 (11%), Positives = 93/306 (30%), Gaps = 62/306 (20%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES----RKHT 129
           L+   R +      +  +  ++  +  + I         ++    + + + +    R+ +
Sbjct: 17  LLDRIRAALRLRHYSYRTEQAYVHWAKRYILFHDKRHPEQMGAAEVEAFLSALATERQVS 76

Query: 130 PSSAIQFLTSMRVLFKWAVRQE--YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            S+  Q L ++  L++  + Q+  ++      ++ R K + +     T+E+  +     +
Sbjct: 77  ASTQNQALAALLFLYREVLGQDLPWLE-----NLTRAKPREKRPVVLTREETSRLLDRLT 131

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIIT----------- 234
            G    L    +  +G+R  + C+  ++ +   +   +I++ K G               
Sbjct: 132 -GVHA-LMGRLIYGTGMRLMECCQLRIKDVDFGLREITIRSGKGGKDRVTMLPASLLEPL 189

Query: 235 ---------------------VELPDGFMKLLAMTPIGKETFFIN-------------ND 260
                                V +PD   +           F++                
Sbjct: 190 QAQCVQAREWHDADRQAKAPGVFMPDALARKYPRASTSWSWFWLFPASQHSTDPVSRIIR 249

Query: 261 KQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           +  +         +     AG+    + H +R   AT    +G     +    G   V  
Sbjct: 250 RHHLYPQSLQRAIRQAVQAAGIVKPATTHTLRHSFATHLLMSGYDIRTVQELLGHADVAT 309

Query: 319 AETYTK 324
              YT 
Sbjct: 310 TMIYTH 315


>gi|227500720|ref|ZP_03930769.1| integrase [Anaerococcus tetradius ATCC 35098]
 gi|227217178|gb|EEI82527.1| integrase [Anaerococcus tetradius ATCC 35098]
          Length = 380

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 43/288 (14%), Positives = 97/288 (33%), Gaps = 39/288 (13%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVES--- 125
           + +     Y++      +  N+  + E+  + +I+   GD    +I    I         
Sbjct: 64  SFREFFELYKRDRK-PRIRENTWRTKEAIVNQKILPYIGDLMLNEINNVTIIQWQNELMK 122

Query: 126 ------RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKED 178
                 +K++P+        +  +   A R   +  N    V    +++ + +  WT+++
Sbjct: 123 IKDNNGKKYSPTYLRTIHAQLSSILNHACRYYNLKTNVARDVGSMGEKEADEMLFWTQDE 182

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG----------------VQHLQNNIF 222
            ++F     +  +   AFE L + GLR  +                     +Q +     
Sbjct: 183 YERFIEAIKDKPESFYAFELLYWCGLRMGELLALTKEKFDFKKHTLKIDESLQRIDGKNV 242

Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
               +   +I T+ +P+     +       ++F+    K K     FS  +       G 
Sbjct: 243 ITAPKTKKSIRTIVMPEFLTDEIKEYI---DSFY--KIKPKDLIFNFSKSYLHHEMDRGS 297

Query: 283 NKS------AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            KS       H +R    ++  + G +A  +    G +++D    Y  
Sbjct: 298 KKSQVKRIRIHDLRHSHVSLLIELGFSATAIADRVGHESIDITYRYAH 345


>gi|153854480|ref|ZP_01995758.1| hypothetical protein DORLON_01753 [Dorea longicatena DSM 13814]
 gi|149753006|gb|EDM62937.1| hypothetical protein DORLON_01753 [Dorea longicatena DSM 13814]
          Length = 405

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 51/356 (14%), Positives = 110/356 (30%), Gaps = 59/356 (16%)

Query: 23  YYFRKGH---------GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT--L 71
           +Y R            G++     P E+    +Y         K+  +   + + T   L
Sbjct: 25  WYHRTKELQDDLTTKYGKKGGFETPEEAE--KSYWEYEKRYQKKQRDLQIAKMQKTDVML 82

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVES-RKH 128
              +  + ++     +   +R+        +I  S   D   + I+ +++ + +E   K 
Sbjct: 83  GDYLEYWFENIFSPRIETTTRMVGAYTLYNLILPSMEADIKLKYISVEYLDALLERVAKI 142

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
            PS+  +    + +  K A   ++++ NP    +   R    +R   KE ++ F    S+
Sbjct: 143 CPSAGNKGRELLSIAMKDAAGDKFISYNPMPETKPYPRVKPKVRVLGKEKLKVFLEAASK 202

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ--------------------- 227
                L     L+ GLR  +      Q       +++                       
Sbjct: 203 N-PWYLEILLGLFCGLRKGEILGLKFQDFDFEKQTVRISRQLVGNLKLKEKEFTVTEYAV 261

Query: 228 -----KTGTIITVELPD-----------GFMKLLAMTPIGK----ETFFINNDKQKMNAT 267
                KT     +                 ++L    P  +    +      + +  + T
Sbjct: 262 IERNPKTENSYRILRVPKVVMQEVKRRQQLIELRKTDPGIEYKNFDYVCCQENGEPRSLT 321

Query: 268 QFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
             +        + G+ N + HG+R   ATI  + G    ++    G  +V     Y
Sbjct: 322 AMNQALTKICNRNGLANITVHGLRHMFATILIELGVPLFKISGLLGHSSVHTTYEY 377


>gi|134287704|ref|YP_001109870.1| phage integrase family protein [Burkholderia vietnamiensis G4]
 gi|134132354|gb|ABO60089.1| phage integrase family protein [Burkholderia vietnamiensis G4]
          Length = 291

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 42/276 (15%), Positives = 87/276 (31%), Gaps = 19/276 (6%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
               T+  L                ++  +     +     G       T + +R     
Sbjct: 3   PSTQTISPLRQRMIDDMRMRKFTAKTQNGYLRAVKRFAGFLGRSPDTA-TVEDLRWYQLH 61

Query: 126 RKHTPSSAIQFLTSMRVL-FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
              T +S I    ++  L F + V  +   +     ++  +         ++E++ +  +
Sbjct: 62  LVDTGTSPISLNAAIAGLKFFFDVTLDRAEL--MAKMQPVRVPQRLPVVLSREEVGRLIA 119

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFM 242
             S   + + A      +GLR S+     V  + +   +++    K        L    +
Sbjct: 120 -ASGNLKHQTALSLAYGTGLRASEVVALKVCDIDSQRMTLRVEQGKGRKDRYAMLSPVLL 178

Query: 243 KLLA-----MTPIGKET----FFIN-NDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290
           + L          GK       F   N  + ++  Q +    A A +A ++K  S H +R
Sbjct: 179 ERLRVWWRVARAQGKMLDGGWLFPGLNPIESLSTRQLNRAIHAAAAEAKIDKRVSMHTLR 238

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
              AT   +       +    G K +D    YT+ A
Sbjct: 239 HCFATHLLEQKVDIRVIQVLLGHKQLDTTALYTQVA 274


>gi|298377186|ref|ZP_06987140.1| transposase [Bacteroides sp. 3_1_19]
 gi|298266170|gb|EFI07829.1| transposase [Bacteroides sp. 3_1_19]
          Length = 412

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/273 (13%), Positives = 89/273 (32%), Gaps = 36/273 (13%)

Query: 86  SLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGVESRKHT----PSSAIQ 135
             +  +   +++   ++ +         D  + ++T + IR+     K       ++ ++
Sbjct: 129 DYSPVTINRYKNVVKKLQQLIPSYYGKEDITFHELTPEFIRAFDIYLKTEGGLCRNTIVR 188

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WSEGSQP 192
           ++   +     A+ +E++  NP    +  + +T+     T +++Q               
Sbjct: 189 YMKCFKKFTNMALAKEWMRKNPFYGYKMEQDETD-PVFLTYDELQAVMKKKFTIPRLELV 247

Query: 193 RLAFEFLLYSGLRCSDSCRAG-----VQHLQNNIFSI------KTQKTGTIITVELPDGF 241
           R  F F  ++GL  SD            +L +             +K  +I  + L    
Sbjct: 248 RDIFVFACFTGLAFSDVATLSGENLVQDNLGDWWIRKGRVKLEHRRKASSISNIPLLPVP 307

Query: 242 MKLLAMTPIGKETFFINNDK---QKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATI 296
           + +L      +E             M   + + + K  A   G+ K  + H  R    T 
Sbjct: 308 LAILEKY---REHPICVKKGCCLPVMCNQKMNSYLKEIADFCGIKKNLTTHVARHTFGTT 364

Query: 297 --SADAGATAHELMATYGWKTVDQAETYTKGAD 327
              A+      ++    G  +    + Y +  +
Sbjct: 365 VTLANN-VPLQDVSVMLGHASTRMTQHYARVMN 396


>gi|296163644|ref|ZP_06846371.1| integrase family protein [Burkholderia sp. Ch1-1]
 gi|295886111|gb|EFG66002.1| integrase family protein [Burkholderia sp. Ch1-1]
          Length = 355

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 49/298 (16%), Positives = 99/298 (33%), Gaps = 50/298 (16%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVESRKHTPS--- 131
            +  S     LA N+  ++    +  +R  +    D R  + + I   +   +  P    
Sbjct: 26  RWIDSCSSLGLARNTITAYMYAVEGFLRFGQEHGVDLRGTSHEVIARYIGEMRTRPRRSR 85

Query: 132 ---------------SAIQFLTSMRVLFKWAVRQEYVAINPCL----------SVERPKR 166
                          +  Q +T++R+LF + + +  +  NP                 + 
Sbjct: 86  PNETRTGSGGFLSNATLQQRITAVRLLFDFLIDEGLLRTNPVSRGRCTSSSRFGAGSERG 145

Query: 167 KTEGIR--PW--TKEDMQQFKS-FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--N 219
             +     PW  T+E      +    E  + R    F   + LR  + CR     L   +
Sbjct: 146 LVQRFHKLPWIPTEEQWTTLLAAVREEPMRNRCMLAFAYDAALRREELCRLRSSDLDPAH 205

Query: 220 NIFSIKTQKTGTIITVELP------DGFMKLLAMTPIGKE--TFFIN----NDKQKMNAT 267
            +  ++ + T       +P      +     L   P G++    F++    N    +   
Sbjct: 206 RLLRVRAETTKGRRERVVPYSETAAELLRDYLRHRPPGRDRHALFLSESPRNHGAPITLW 265

Query: 268 QFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            +S   ++ A +A V   S H +R    T  A +G   HE+    G ++++    Y  
Sbjct: 266 TWSKVVRSIALRADVTAFSTHTLRHLCLTDLARSGWQLHEIARFAGHQSLETTRQYIH 323


>gi|257417156|ref|ZP_05594150.1| conserved hypothetical protein [Enterococcus faecalis AR01/DG]
 gi|257158984|gb|EEU88944.1| conserved hypothetical protein [Enterococcus faecalis ARO1/DG]
          Length = 309

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 44/288 (15%), Positives = 90/288 (31%), Gaps = 44/288 (15%)

Query: 73  WLISEYRKSAHWGSL------AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
            L  EY   + W  L         S   +      +   +     + +  +  +  +   
Sbjct: 9   QLFHEYF--SEWVELYKVGAIRDISLQKYYIAEQWLAELAPGLKVKHLDRQRYQQLLNDY 66

Query: 127 KHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV----ERPKRKTEGIRPWTKEDMQ 180
             T    + + F   ++     AV +  ++ NP   +    + P+ K        + ++Q
Sbjct: 67  ALTHERQTTMDFHHQLKGAILDAVDEGLISKNPTRKIVIKGKTPRPKKSKF--LNQFEVQ 124

Query: 181 QFKSFWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSIKTQKT--------- 229
                   G Q    +  LL   +GLR S++     +    +   I  +KT         
Sbjct: 125 ALLKELELGEQLNWDWFILLVVKTGLRFSEALALTPKDFDFSKQKITIEKTWNYKNPTGF 184

Query: 230 -----------GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKAT 278
                         I  +    F +L+   P  +  F      +  N+T  +   K    
Sbjct: 185 FQSTKNESSKRKVQIDWQTAMQFSQLIRNMPPMEPIFV---KGRVFNST-INSRLKVLCK 240

Query: 279 KAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
           +A +   + H +R   A++   AG +   +    G  ++    ETY  
Sbjct: 241 RAQIPVITVHSLRHTHASLLLFAGVSIASVATRLGHSSMTTTQETYLH 288


>gi|156976230|ref|YP_001447136.1| integrase [Vibrio harveyi ATCC BAA-1116]
 gi|156527824|gb|ABU72909.1| hypothetical protein VIBHAR_05002 [Vibrio harveyi ATCC BAA-1116]
          Length = 345

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/254 (13%), Positives = 79/254 (31%), Gaps = 26/254 (10%)

Query: 93  ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK----------HTPSSAIQFLTSMRV 142
              +    + I + G+    +   +   +   +R            +P++    L  ++ 
Sbjct: 83  KQAKDLISKTIEELGNPIACQFKERDYLAYRAARTPYRGKNKSIEISPTTHNLELIYLKG 142

Query: 143 LFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF--------KSFWSEGSQPR 193
           +FK  ++  ++   NP  ++E  K   + +   TK  + +F        +   +   Q  
Sbjct: 143 MFKKLIKYNQWKYPNPLEAIEPIKTSEKHLAYLTKPQIDEFFDELQNCKRVIKASIPQII 202

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE 253
           +  +  L +G R S++       +     +    K     +V +     + +    +   
Sbjct: 203 VIAKICLATGARISEALTLTRTQITEFKLTYTDTKGKRNRSVPISPSLYQEILDIAVSDH 262

Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGVNKSA-HGVRKFSATISADAGATAHELMATYG 312
             F  + K            K    +   N  A H +R   A+           L    G
Sbjct: 263 DIFNTSYKDAWRY------IKRALPEHVPNGQATHVLRHTFASHFMMNKGDILVLQRILG 316

Query: 313 WKTVDQAETYTKGA 326
              ++Q   Y+  A
Sbjct: 317 HTKIEQTMAYSHFA 330


>gi|126661561|ref|ZP_01732603.1| hypothetical protein CY0110_01674 [Cyanothece sp. CCY0110]
 gi|126617154|gb|EAZ87981.1| hypothetical protein CY0110_01674 [Cyanothece sp. CCY0110]
          Length = 225

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/190 (15%), Positives = 69/190 (36%), Gaps = 14/190 (7%)

Query: 165 KRKTEGI-RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223
           K    G  +  T E++Q   S   +  + R+ F  +L++  R +++C      + +    
Sbjct: 2   KVNGHGRAKILTIEEIQILFSNGLKLERDRVLFGVMLFTACRINEACTLRTTDVYDRRGR 61

Query: 224 ------IKTQKTGTII---TVELPDGFMKLL--AMTPIGKETFFINNDKQKMNATQFSIW 272
                  + + T   +   T+ + +    LL        +   F    +  +     S  
Sbjct: 62  VMDEVIFRKENTKGKLATRTIPVFEDLRILLSNYRIDRAERYLFPGRLEGHIQPDSASRI 121

Query: 273 FKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIR 330
           F+      G+   S H  R+ + T  ++ G     +    G + + Q + Y +   +++R
Sbjct: 122 FRKACISVGIVGASTHSFRRTALTQMSNGGIPLRVIQEVSGHRNLGQLQKYLEVQPEQVR 181

Query: 331 LGIKNSRRIS 340
             I +   +S
Sbjct: 182 GAIASLSMLS 191


>gi|50085310|ref|YP_046820.1| putative integrase/recombinase protein [Acinetobacter sp. ADP1]
 gi|49531286|emb|CAG68998.1| putative integrase/recombinase protein [Acinetobacter sp. ADP1]
          Length = 340

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 44/325 (13%), Positives = 91/325 (28%), Gaps = 24/325 (7%)

Query: 12  TKERTRHGKIIYYFRKGHGRRIRLPYP-HESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
            K   R        R  + R         E     A +  L          +  RK   +
Sbjct: 2   QKPVKRGNAWRIQVRYKNLRDTATRDTARECEQWAA-IRLLEMKAEYDPQKSIERKAYFS 60

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESY--FDQIIRKSGDFDYRKITTKHIRSGVESRKH 128
              L  +Y           +          F +      +     I    +R+  + R  
Sbjct: 61  FHALFQKYYDEVGCKKRGKSYIQQQLKIKTFKKYFGDLAEKSIYDIEAIDVRNWRDKRLQ 120

Query: 129 TPSSAIQFLTS--MRVLFKWAV-RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
             ++            +F +A      +  NP   V +P +     R  ++ +++     
Sbjct: 121 EVAAGTVHRQMCLYTSVFNYAKNELFMLKENPFAQVIKPAKPPARNRLISQSEIETILEA 180

Query: 186 --WSEGSQPRL-------AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
             +  G+ P+        AF F + + +R  +       ++  +   +   K G    V 
Sbjct: 181 LNYKAGTTPKTPRQYVAWAFLFAIETAMRKGEIIGITCNNIYPDYIHLPMTKNGDSRNVP 240

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSA 294
           L      LL + P       I        +  F + ++    K  ++     H  R  + 
Sbjct: 241 LSTEARALLDLLPHADRVKLI-----PHTSNSFRLCWQRAVGKTELHNLVHFHDTRHEAI 295

Query: 295 TISADAGATAHELMA-TYGWKTVDQ 318
           T   +      E++A   G + +  
Sbjct: 296 TRLVNKRKLPVEILAKVTGHRDIRT 320


>gi|148243783|ref|YP_001220023.1| phage integrase family protein [Acidiphilium cryptum JF-5]
 gi|325113224|ref|YP_004277170.1| phage integrase family protein [Acidiphilium multivorum AIU301]
 gi|325113258|ref|YP_004277204.1| phage integrase family protein [Acidiphilium multivorum AIU301]
 gi|326402547|ref|YP_004282628.1| phage integrase family protein [Acidiphilium multivorum AIU301]
 gi|146400346|gb|ABQ28881.1| phage integrase family protein [Acidiphilium cryptum JF-5]
 gi|325049408|dbj|BAJ79746.1| phage integrase family protein [Acidiphilium multivorum AIU301]
 gi|325052691|dbj|BAJ83028.1| phage integrase family protein [Acidiphilium multivorum AIU301]
 gi|325052725|dbj|BAJ83062.1| phage integrase family protein [Acidiphilium multivorum AIU301]
          Length = 330

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 43/312 (13%), Positives = 94/312 (30%), Gaps = 47/312 (15%)

Query: 70  TLKWLISEYRKSAHWGSLAVN--SRISFESYFDQIIRKSG---DFDYRKITTKHIRSGVE 124
           TL  LI  +        L  +  +   +   F  ++R +          +T + I + + 
Sbjct: 5   TLPALIQRFFTDRLCTQLEASRHTVAGYRDTFRLLLRYASARRKKPPVNLTVEDIDADLV 64

Query: 125 S---------RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINP-----CLSVERPKRKTEG 170
           +         R ++  S    L ++R  F++         +P     C  +     K   
Sbjct: 65  ADFLAHTETARGNSARSRNTRLAAIRSFFRF-----VAMTDPTWLLHCQRILAMPNKRYV 119

Query: 171 IRPWTKEDMQQFKSFWS-------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF- 222
            R  T  D ++  +  +        G +        + +GLR S+        +      
Sbjct: 120 KRAVTFLDAEEMAALLAAPDRTTWAGRRDHALLLLAVQTGLRASELVGLTRGDVVLGTGA 179

Query: 223 SIKTQKTG-----TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKA 277
            I+    G     T +  E        +       +  F +   ++++        +   
Sbjct: 180 HIRCMGKGRKERATPLRRETAKLLATWIGNDKDEGKPLFPSIRGERLSRDALEHLVRKHC 239

Query: 278 TKAGVNK--------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             A            + H +R  +A      G     +    G + V+  + Y   AD +
Sbjct: 240 LTASRACPSIGTKQVTPHTLRHSTAMDLLHHGVDPAVIALWLGHENVETTQIYIH-AD-M 297

Query: 330 RLGIKNSRRISS 341
           R+  K   R+++
Sbjct: 298 RMKEKALARVAA 309


>gi|329313503|gb|AEB87916.1| Integrase [Staphylococcus aureus subsp. aureus T0131]
          Length = 368

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 53/359 (14%), Positives = 101/359 (28%), Gaps = 40/359 (11%)

Query: 1   MTPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60
           MT +L L   + K+  R     YYFR  +  +                 A+       + 
Sbjct: 1   MTHNLNLSHNIYKDTKRG---TYYFRITYYDKSNTRKYITRKGFKQRKDAVKKCNEMMDE 57

Query: 61  INSPRKKPT-TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119
           +             L+ EY           + +       + ++      D  K+TT+ +
Sbjct: 58  LEGVGHLNRLPFDKLVEEYIDWYSARRKTSSVKALKTHTNNHLLPYFKSMDVFKMTTQDV 117

Query: 120 RSGVESRKHTPSSAIQFLTS---MRVLFKWAVRQEYVAINPCLSVERPKRKT-EGIRPWT 175
                 +     S          +  L   A++   +  N    V   + ++ + +  WT
Sbjct: 118 MKFQNKKLKEGHSGDYLKKMHVYLVSLLNHAMKFHELKQNVASLVGNFEIESQKRLNYWT 177

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSI--------- 224
            E   QF        Q +L F+ L YSG R  +      + +   ++   I         
Sbjct: 178 LEQFNQFYGAL-VTQQQKLFFKLLFYSGARKGEIRALTWRDINFDDDFIHINKTDYHGEV 236

Query: 225 KTQKTGTII-TVELPDGFMKLLAM--------TPIGKETFFINNDKQKMNATQFSIWFKA 275
              KT + I  + LP   M  +               +        +  + +    WF  
Sbjct: 237 TAPKTKSAIRDIYLPTHMMDDIKGYLNWYKENNIFKDDYVLFGTFYKAYSESTIDRWFTN 296

Query: 276 KATKAGVNKS---------AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
                               H +R   A++  + GA+   +    G       E Y + 
Sbjct: 297 ALKVLDEQLPNGQNFPRIVIHELRHSHASMLVNLGASVMIIAQRLGHSD--TTEVYNRY 353


>gi|307637362|gb|ADN79812.1| integrase/recombinase [Helicobacter pylori 908]
 gi|325995955|gb|ADZ51360.1| integrase/recombinase [Helicobacter pylori 2018]
          Length = 363

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 26/174 (14%), Positives = 63/174 (36%), Gaps = 15/174 (8%)

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIIT 234
           E + + +      ++ RL  + ++++G+R +++ +  ++    +N  ++I  +  G    
Sbjct: 186 ESIDKIEMSAKVRARNRLLIKIIVFTGMRSNEALQLKIKDFTLENGCYTILIKGKGDKYR 245

Query: 235 VELPDG------FMKLLAMT---PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284
             +           + L      P+  +  F N     +         +     AG+ + 
Sbjct: 246 AVMLKAFHIESLLKEWLTERELYPVKNDLLFCNQKGMALTQAYLYKQVERIINFAGLRRE 305

Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
              AH +R   AT+          +    G  +++ +  YT   D+ RL    S
Sbjct: 306 KNGAHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTH-FDKERLKEAAS 358


>gi|296506648|ref|YP_003667882.1| Integrase-recombinase [Bacillus thuringiensis BMB171]
 gi|296327235|gb|ADH10162.1| Integrase-recombinase [Bacillus thuringiensis BMB171]
          Length = 390

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/180 (16%), Positives = 61/180 (33%), Gaps = 24/180 (13%)

Query: 167 KTEGIRPWTKEDMQQFKSFWSE--GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFS 223
           +    R  + +++ +   F+ E            L  +G R  + C A V+ L  +  + 
Sbjct: 191 QDRPNRDLSYDEVMKILEFYKEQGHLVNYTILLALASTGARIQELCTARVKDLHYDGKYW 250

Query: 224 IKTQKTGTIIT-VELPDGFMKLLAMTPIGK-----------ETFFINNDKQKMNATQFSI 271
           +K    G  +  + +P+   + ++     +              FIN      N    S 
Sbjct: 251 LKVTGKGDKVRELFIPEHLFQCISEMRRRRGFQTVLNCGDESPVFINQRGNFYNPKTLSN 310

Query: 272 WFKAKATKAGVN--------KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETY 322
                  K  ++         +AH  R   A ++ + G A  + LM T G + +   + Y
Sbjct: 311 QVTDMIKKTNLDFLKYRENPVTAHTFRHAFAIMAVEQGNADLYHLMQTLGHENIQTTKIY 370


>gi|291561396|emb|CBL40195.1| Site-specific recombinase XerD [butyrate-producing bacterium SS3/4]
          Length = 394

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 45/340 (13%), Positives = 106/340 (31%), Gaps = 51/340 (15%)

Query: 23  YYFRKGHG---------RRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
           YYFR   G         ++ +  +  +     AY   +  ST +     + +K+  + + 
Sbjct: 14  YYFRANLGFHPITGKQIQKYKSGFKTKKEAREAYSKLMLTSTEEL----TEKKQQLSFQQ 69

Query: 74  LISE----YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH- 128
            I E    + K+     +  ++ ++  S   +           +I   ++++        
Sbjct: 70  FIEETYLPWYKT----QVKESTYLNRRSTIQKHFSYFYKMTVDEIEPINVQNWQLELAKE 125

Query: 129 -TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            +P+        + + F  AV       NP   +   K K   +  WT ++ Q+  S   
Sbjct: 126 FSPNYIRIVQGMLSIAFDRAVVLGLAKKNPSRMIGNIKSKKTKVDFWTLDEFQKVISLLY 185

Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV----ELPD 239
           +G        +++  L  +G+R  ++       +      +   KT    T+     +  
Sbjct: 186 KGDYYEHYLFISYWLLFMTGMRIGEAAALQWSDINFETGLLSITKTLYYKTIDEYKFVEP 245

Query: 240 GFMKLLAMTPIGKETF-------------------FINNDKQKMNATQFSIWFKAKATKA 280
                +    I  +T                     ++ +    +        +  A  A
Sbjct: 246 KTQASIRTIYIDTDTIKELKAWQEVQQKVLKDCDLVLSYNGIPTSKHTLPRALEKLAGLA 305

Query: 281 GVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
           GV++   H +R   A++    G     +    G + +   
Sbjct: 306 GVHRIKIHALRHSHASLLISMGENPLLIKERLGHEKIQTT 345


>gi|229051823|ref|ZP_04195272.1| Integrase-recombinase [Bacillus cereus AH676]
 gi|229125217|ref|ZP_04254335.1| Integrase-recombinase [Bacillus cereus 95/8201]
 gi|228658243|gb|EEL13965.1| Integrase-recombinase [Bacillus cereus 95/8201]
 gi|228721530|gb|EEL73025.1| Integrase-recombinase [Bacillus cereus AH676]
          Length = 390

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/180 (16%), Positives = 61/180 (33%), Gaps = 24/180 (13%)

Query: 167 KTEGIRPWTKEDMQQFKSFWSE--GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFS 223
           +    R  + +++ +   F+ E            L  +G R  + C A V+ L  +  + 
Sbjct: 191 QDRPNRDLSYDEVMKILEFYKEQGHLVNYTILLALASTGARIQELCTARVKDLHYDGKYW 250

Query: 224 IKTQKTGTIIT-VELPDGFMKLLAMTPIGK-----------ETFFINNDKQKMNATQFSI 271
           +K    G  +  + +P+   + ++     +              FIN      N    S 
Sbjct: 251 LKVTGKGDKVRELFIPEHLFQCISEMRRRRGFQTVLNRGDESPVFINQRGNFYNPKTLSN 310

Query: 272 WFKAKATKAGVN--------KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETY 322
                  K  ++         +AH  R   A ++ + G A  + LM T G + +   + Y
Sbjct: 311 QVTDMIKKTNLDFLKYRENPVTAHTFRHAFAIMAVEQGNADLYHLMQTLGHENIQTTKIY 370


>gi|91786616|ref|YP_547568.1| phage integrase [Polaromonas sp. JS666]
 gi|91695841|gb|ABE42670.1| phage integrase [Polaromonas sp. JS666]
          Length = 331

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 49/294 (16%), Positives = 98/294 (33%), Gaps = 37/294 (12%)

Query: 66  KKPTTLKWLISEYRKS--AHWGSLAVNSRISFESYFD--------QIIRKSGDFDYRKIT 115
           +  +TL   I  +         +LA N+R S+             ++ +         ++
Sbjct: 2   RDTSTLGPWIRRFLLEHLVSERNLAANTRRSYRDTMCQLLPFVSGRLHKAVDRLAVVDVS 61

Query: 116 TKHIRSGVES----RKHTPSSAIQFLTSMRVLFKWAVRQ--EYVAINPCLSVE--RPKRK 167
            + +R  +      R    ++  Q L ++  L ++      E++A   C  V     K+ 
Sbjct: 62  PQLVREFLSDVETHRGCGIATRNQRLAAIHALARFVGEHSPEHIA--WCAQVRCVPYKKG 119

Query: 168 TEGIRP-WTKEDMQQFKS----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222
           T+   P   K ++    +       +G +      FL  +G R S++    V  L  +  
Sbjct: 120 TQASVPYLDKAEIDALLACPNRRTEQGGRDYALLLFLYNTGARASEASELIVGDLHLDQA 179

Query: 223 SI-KTQKTGTIITVELPDGFMKLLAMT---PIGKETFFINNDKQKMNATQFSIWFKAKAT 278
           S+    K        L    ++ L          E  F+N   Q           +  A 
Sbjct: 180 SVDILGKGRKRRQCPLWPATVRELRALVGERSRHEHVFLNRCGQPTTRFGVHALVERTAA 239

Query: 279 KAG-------VNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +A        + + S H +R  +A+    AG   + + A  G  ++D    Y +
Sbjct: 240 RAKDFMPSLAMKRVSPHSIRHSTASHLLSAGVDINTVRAWLGHASLDTTNVYAE 293


>gi|56476508|ref|YP_158097.1| phage-related integrase [Aromatoleum aromaticum EbN1]
 gi|56312551|emb|CAI07196.1| phage-related integrase [Aromatoleum aromaticum EbN1]
          Length = 347

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 42/309 (13%), Positives = 89/309 (28%), Gaps = 40/309 (12%)

Query: 55  TPKREYINSPRKKPTTLKWLISEYRKSA--HWGSLAVNSRISFESYFDQIIRKSGD---F 109
           +P   + + P  +    + L+  +         + +  +  ++   F  ++  +      
Sbjct: 6   SPIHHHRSPPCPRTHACRALLQRFFAERLIQQQNASPRTVGAYRDTFRLLLTYAERERGK 65

Query: 110 DYRKITTKHIRSGVE---------SRKHTPSSAIQFLTSMRVLFKWAVRQ-----EYVAI 155
              K+T     + +           R HT  S    L ++R    +   Q     +    
Sbjct: 66  PPAKLTLGDFNAALVLDFLAHLETERHHTVRSRNARLAAVRAFAHYVALQCPPTLQLAQQ 125

Query: 156 NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCR 211
              L++   + +   +   +++++Q   +        G + R+ F  L  +G R S+   
Sbjct: 126 --ILAIPMKRFERPLLEYLSRDEVQAVLAAPDTSTWCGRRDRVMFALLYNTGARVSEMIG 183

Query: 212 AGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLA-----MTPIGKETFFINNDKQKM 264
             V  +     S      K     TV L       +            +    N   + M
Sbjct: 184 IRVADVTLGATSSVRLQGKGRKQRTVPLWKETAAEIRHWLKYADLRTDQPLVPNRSGRAM 243

Query: 265 NATQFSIWFKAKATKA--------GVNKSAHGVRKFSATISADAGATAHELMATYGWKTV 316
             T  +       T A        G   S H  R  +A     AG     +    G ++ 
Sbjct: 244 TRTNVAERLALAITAATTQCPRLAGRRISPHSWRHTTAMHLLQAGVDITVIALWLGHESP 303

Query: 317 DQAETYTKG 325
                Y + 
Sbjct: 304 VTTHGYVEA 312


>gi|320322906|gb|EFW78996.1| phage-related integrase [Pseudomonas syringae pv. glycinea str.
           B076]
 gi|320329971|gb|EFW85959.1| phage-related integrase [Pseudomonas syringae pv. glycinea str.
           race 4]
 gi|330874767|gb|EGH08916.1| phage-related integrase [Pseudomonas syringae pv. glycinea str.
           race 4]
          Length = 402

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 46/311 (14%), Positives = 105/311 (33%), Gaps = 30/311 (9%)

Query: 52  TGSTPKREYINSPRKKPT--TLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGD 108
            G +P +E   +  +     T      ++ +      +A ++R    S +++ +    G+
Sbjct: 78  AGKSPAKEKARAKARIKGAETFDAWAEKWLRGYQ---MADSTRDMRRSVYERELKPHFGN 134

Query: 109 FDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
               +I  + +R+  ++   +  P++A+     +  +F+WA+ +     +P   V     
Sbjct: 135 QKLVEINHEDLRTLTDAIVERGAPATAVHSREIVMQVFRWAIERGQKVESPADLVRPASI 194

Query: 167 KT--EGIRPWTKEDMQ---QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221
                  R    +++    Q+          R A + LL + +R S+   A    +  + 
Sbjct: 195 AKFEPRDRALGPDEIALMYQYLDRIGTACSVRAAAKLLLLTMVRKSELTNATWNEINFSE 254

Query: 222 FSIK----TQKTGTIITVELPDGFMK---LLAMTPIGKETFFINNDKQ--KMNATQFSIW 272
                     K      V L    +     L     G +  F +       M+    +  
Sbjct: 255 ALWTIPKERMKRRNPHLVFLSQQALDFFIALKTFAGGSDYVFPSRYDSDLPMSTATINQV 314

Query: 273 FK---AKATKAGVNKS---AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG- 325
                  A K G   S    H +R+ ++T+  +AG  +  +      +       Y K  
Sbjct: 315 LTLSYRLAQKEGQPLSKFGPHDLRRTASTLLHEAGYNSDWIEKCLAHEQKGVRAVYNKAE 374

Query: 326 -ADRIRLGIKN 335
             D+ R  +++
Sbjct: 375 YRDQRRAMLQD 385


>gi|315150954|gb|EFT94970.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0012]
          Length = 372

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 50/354 (14%), Positives = 111/354 (31%), Gaps = 50/354 (14%)

Query: 14  ERTRHGKIIYYFRKGH----GRRIRLPYPHESTFIPAYMSALTGSTPKREYIN--SPRKK 67
            + +     Y+         G+RI         F   + +A        +++     +++
Sbjct: 8   YKDKKTGKYYFVASLGFDLKGKRI-------QKFKRGFKTAKEAKKAYNQFMIDYQEKRE 60

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127
             T      EY K  +   +  ++  +     +  +    +     I T  ++  +    
Sbjct: 61  KITFGNFYEEYYKCWYKNHVKESTFKTNTGIIENHLSIFNEVQINAIETVDLQKLINYLS 120

Query: 128 H----------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
                      +P      + +++ +F+ A    ++  +    V R + + + +  WT +
Sbjct: 121 GEYKTKTGESLSPEYINLIICNIQSVFERAFIFGFIDEDISKKVSRVRVEEKEVNIWTID 180

Query: 178 DMQQFKSFWSEGSQ----PRLAFEFLLYSGLRCSDSCRAGVQHLQNN------------- 220
           DMQ+      E        ++ F FL  +GLR  ++     + +  +             
Sbjct: 181 DMQKVMLLSDESDSLLFFKKMFFRFLFMTGLRLGEALALNWEDVDFDSKVVYINKTMLVK 240

Query: 221 ---IFSIKTQKTGTII-TVELPDGFMKLLAMTPIGKET----FFINNDKQKMNATQFSIW 272
               F   T KT + I TV L D  ++L  +    +         + D   +  +    W
Sbjct: 241 NKREFRTTTPKTKSSIRTVSLDDETLRLFEIWREQQSPLKINLIFSIDGGTLAKSTTHGW 300

Query: 273 FKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
            K     A V     H +R   A++       +  +    G   +    E Y  
Sbjct: 301 LKKLCDLADVPVIKIHALRHSHASMLIALKEDSLVIKERLGHSRITTTLEKYGH 354


>gi|307826955|ref|ZP_07656735.1| integrase family protein [Methylobacter tundripaludum SV96]
 gi|307732373|gb|EFO03296.1| integrase family protein [Methylobacter tundripaludum SV96]
          Length = 277

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/265 (13%), Positives = 81/265 (30%), Gaps = 35/265 (13%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRK--ITTKHIRSGVESRKHTPSSAIQFLTSMRV 142
             L+  ++ S+     +                 +  +  +     +P S    LT ++ 
Sbjct: 22  RKLSPKTQASYIRVVKRFAGFLRRSPDTASVEDLRRYQLHLVDHGISPISLNATLTGLKF 81

Query: 143 LFKWAVRQEYVAINPCLSVERP--KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200
           LF+  + +      P L  +        +     ++E++ +  +      + + A     
Sbjct: 82  LFETTLDR------PELLTKMHPVHVPHKLPVVLSREEVARLIAAVD-NLKHQTALSVAY 134

Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLAMTPIGKETFFIN 258
            +GLR S+     V  + +   +++    K        L    ++ L          F +
Sbjct: 135 GAGLRASEVVSLKVGDIDSQRMTLRIEQGKGSKDRYAMLSPVLLERLRAWWK-----FAH 189

Query: 259 NDKQ---------------KMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301
              +                ++  Q +    A A  A ++K  S H +R   AT   +  
Sbjct: 190 AQGKMLQGGWLFPGLDPIDPLSTRQLNRAIHAAAEAARIDKRVSMHTLRHSFATHLLEQK 249

Query: 302 ATAHELMATYGWKTVDQAETYTKGA 326
                +    G K ++    Y + A
Sbjct: 250 VDIRVIQVLLGHKKLETTALYAQVA 274


>gi|317508618|ref|ZP_07966276.1| phage integrase [Segniliparus rugosus ATCC BAA-974]
 gi|316253085|gb|EFV12497.1| phage integrase [Segniliparus rugosus ATCC BAA-974]
          Length = 444

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 53/382 (13%), Positives = 100/382 (26%), Gaps = 72/382 (18%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT--TL 71
           ++TR G   Y    G                     A    T +   I          T+
Sbjct: 6   KKTRGGTWYYVVDLGPDPTSGKRRQERKRGFRIKDDAEDALTERLAEIRQGVHVDRSVTV 65

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVES----- 125
              + ++  +     L   +   +  + D  ++   G    R +   HI   +       
Sbjct: 66  AAYLRDWIDAKEAAGLRAKTVKGYRQHIDTHLVPHLGHIKLRDLRATHIEKMLREIAKPP 125

Query: 126 --------------RKHTPSSAIQFLT---SMRVLFKWAVRQEYVAINPCLSVERPKRKT 168
                         RK  P SA        ++      A R+  ++ N     +RP    
Sbjct: 126 KQPAPNEKIATGKHRKLKPLSASSIRRVHATLSSALGAAKRKRLISFNAAADSDRPAATR 185

Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKT 226
             +RPW   D+  F    +   +    +E    +GLR  + C      L    ++F ++ 
Sbjct: 186 PKVRPWEPHDLGLFLD-HAASERFGPMYEVAALTGLRRGELCGMRWDDLDFERSVFVVRQ 244

Query: 227 Q--------------------------KTGTI-----------ITVELPDGFMKLLAMTP 249
           Q                          KT +            + V +     +      
Sbjct: 245 QLVVVSSAGIACPYCQGQHKQFRFSTPKTASGEARIVDLDAATVGVLMAQRLAQDAEREE 304

Query: 250 -----IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGAT 303
                +     F   D         +  F       G+ +   H +R   A++   AG  
Sbjct: 305 WGDLYVDHGLVFAREDGNPTPPDDVTERFNKLTDDLGLRRIRLHDLRHGQASLMLAAGVE 364

Query: 304 AHELMATYGWKTVD-QAETYTK 324
              +    G       ++TY+ 
Sbjct: 365 MAVVSKRLGHSRHAFTSDTYSH 386


>gi|262172444|ref|ZP_06040122.1| site-specific recombinase phage integrase family protein [Vibrio
           mimicus MB-451]
 gi|261893520|gb|EEY39506.1| site-specific recombinase phage integrase family protein [Vibrio
           mimicus MB-451]
          Length = 380

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 47/281 (16%), Positives = 88/281 (31%), Gaps = 69/281 (24%)

Query: 108 DFDYRKITTKHIRSGVESRKHTP-------SSAIQFLTSMRVLFKWAVRQEYV-AINPCL 159
           +   + +  KH+     S             +    L ++    +WA+   Y+      +
Sbjct: 71  EIPLKDVQIKHLVRWRNSLATKFGYERVSNRTLNVRLRAIVGFIEWALSNNYIQDSFWGV 130

Query: 160 SVERP----------KRKTEGIRPW--------------TKEDMQQFKSFWSEGSQPRLA 195
            VE+           K++ + IR                T ED+++F     +  +P   
Sbjct: 131 RVEKLIRTGQLNFNQKQQAQRIRTIRLLLTESTCRDPLPTMEDIERFSKKLPKSFRP--M 188

Query: 196 FEFLLYSGLRCSDSC------------------RAGVQHLQNNIFSIKTQKTGTIITVEL 237
              +L +G+R S+                    R     L + + +IK  KT T + +  
Sbjct: 189 MALMLGTGMRISEVLSAPMSAFPSYASVLKDPNRMYSIRLDSRVMTIKNNKTRT-VFIPG 247

Query: 238 PDGFMKLLAMTPI----GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRK 291
                    ++P      +  FF N + Q    +     FK  +  AG+  S   H +R 
Sbjct: 248 RLFLTIYDQVSPSLYAGNQSLFFANENHQAWTPSTIQKSFKRASNLAGLRYSITPHTLRH 307

Query: 292 FSAT----ISADAGATAHE-----LMATYGWKTVDQAE-TY 322
             AT       ++G ++       L    G   V      Y
Sbjct: 308 VFATGTLEQWQESGFSSEMACLIWLQKQLGHSHVSTTANIY 348


>gi|312864175|ref|ZP_07724409.1| site-specific recombinase, phage integrase family [Streptococcus
           vestibularis F0396]
 gi|311100176|gb|EFQ58385.1| site-specific recombinase, phage integrase family [Streptococcus
           vestibularis F0396]
          Length = 388

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 54/320 (16%), Positives = 119/320 (37%), Gaps = 58/320 (18%)

Query: 74  LISEY--RKSAHWGS----LAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR 126
           +I  Y    S+ W +    + VN+R + +S  +  ++   G+F   K+TT  I+S +   
Sbjct: 66  VIETYEELASSWWDNYKNTVKVNTRNTQKSLLNNHVLPLFGEFKLNKLTTPVIQSMMNKL 125

Query: 127 KHTPSS--------AIQFLTSMRVLFKWAVRQEYVAINPCLSVERP----KRKTEGIRPW 174
            ++ ++          +  T  + + ++ V  + +  NP  +V  P    K K   ++ +
Sbjct: 126 ANSTNTGEVGAYLHYGKIHTLNKRILQYGVILQVIPTNPANNVVLPRNTQKDKKAKVKHF 185

Query: 175 TKEDMQQFKSFWSEGSQPR-------LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227
             ++++QF ++       +         ++FLL +G R +++       +  +   +   
Sbjct: 186 NNDELKQFLTYLDSLDNSKYKNYYDITLYKFLLATGCRINEALALSWSDIDLDNSVVHIT 245

Query: 228 KT-GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN--------------------- 265
           KT    + +  P        +    +    +   ++K                       
Sbjct: 246 KTLNCDMKLNSPKSKAGYRDIDIDQQTVTMLKRYQRKQTQEAWKLGRTETVVFSDFINAY 305

Query: 266 --ATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ET 321
                 +   K    KAGV N   HG R   A++  ++G    EL    G  T+    +T
Sbjct: 306 PNYKAVAGRLKTHFKKAGVNNIGFHGFRHTHASLLLNSGIPYKELQHRLGHSTLSMTMDT 365

Query: 322 YTKGADRIRLGIKNSRRISS 341
           Y+       L  +N+++ +S
Sbjct: 366 YSH------LSKENAKKATS 379


>gi|225020746|ref|ZP_03709938.1| hypothetical protein CORMATOL_00753 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224946519|gb|EEG27728.1| hypothetical protein CORMATOL_00753 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 294

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/280 (12%), Positives = 87/280 (31%), Gaps = 13/280 (4%)

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127
           P      I ++  +     +  ++  +   +   +  +        +T+K +      + 
Sbjct: 13  PYEWHEAIRQWEMNLRARGMKESTVETRVKHLRSLALQKVADTPMGVTSKLLVQWAGVKN 72

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER-PKRKTEGIRPWTKEDM-QQFKSF 185
            +P +   +  S+   F + +       NP   +     R +   RP  +E + +     
Sbjct: 73  WSPETRHSYYMSLITFFHYYLPTGV--ENPTKEICHSISRPSPVPRPAPEEVIREALAKA 130

Query: 186 WSEGS-QPRLAFEFLLYSGLRCSDSCRAGVQHLQN---NIFSIKTQKTGTIITVELPDGF 241
           +     +P +        GLR S+     +  L+    N + +   K G    +  P+  
Sbjct: 131 YKLRDQRPAVIIRLAAELGLRRSEIACLHMTDLKGHVGNRWLVIHGKGGKQRVLPCPETL 190

Query: 242 MKLLAMTPIGKETF-FINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISA-D 299
              +         + F       ++    +   K        + + H +R   AT++  +
Sbjct: 191 AHAIKSVSSDDNGWVFPGKIDGHLSPRWIA---KLATRVLAESWTLHTLRHRFATVAYNE 247

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
            G     +    G + +   + YTK        I    +I
Sbjct: 248 GGHDLLTIQQAMGHENIATTQRYTKYQPDALKAIIGVTQI 287


>gi|170694112|ref|ZP_02885267.1| integrase family protein [Burkholderia graminis C4D1M]
 gi|170696177|ref|ZP_02887311.1| integrase family protein [Burkholderia graminis C4D1M]
 gi|170138905|gb|EDT07099.1| integrase family protein [Burkholderia graminis C4D1M]
 gi|170140852|gb|EDT09025.1| integrase family protein [Burkholderia graminis C4D1M]
          Length = 291

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 41/277 (14%), Positives = 89/277 (32%), Gaps = 28/277 (10%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKI--TTKHIRSGVESRKHTPSSAIQFLTSMRV 142
             LA  ++  +     Q     G           +  +  +     +P S    +T ++ 
Sbjct: 22  RKLAPQTQAGYVRVVRQFAAFLGRPPDTATVEDLRRYQLHLVDHGISPVSLNAAITGLKF 81

Query: 143 LFKWAVRQEYVAIN-P--CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199
            F+       + +N P     ++  +         + +++ +  +  +   + + A    
Sbjct: 82  FFE-------ITLNQPGLMARMQPVRVPRTLPVVLSPDEVARLIA-AAGNLKHQTALSVA 133

Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLA----------M 247
             +GLR S+     V  + +   +++    K        L    ++ L            
Sbjct: 134 YGAGLRASEVVALKVGDVDSQRMTLRIEQGKGRRDRYAMLSPVLLERLRVWWRVAHAQGR 193

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAH 305
              G   F   +    ++  Q +    A A +A + K  S H +R   AT   +      
Sbjct: 194 MLEGGWLFPGLDPVDPLSTRQLNRAIHAAAEEAHLGKRVSMHTLRHSFATHLLEQKEDIR 253

Query: 306 ELMATYGWKTVDQAETYTKGA-DRIRLGIKNSRRISS 341
            +    G K ++    YT+ A D +R  I    R+ S
Sbjct: 254 VIQVLLGHKKLETTSLYTQVATDLLRKVISPLDRLPS 290


>gi|310827270|ref|YP_003959627.1| Site-specific recombinase XerC [Eubacterium limosum KIST612]
 gi|308739004|gb|ADO36664.1| Site-specific recombinase XerC [Eubacterium limosum KIST612]
          Length = 417

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 45/311 (14%), Positives = 99/311 (31%), Gaps = 51/311 (16%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV--------- 123
           W+I              +    +   +  II + G ++  ++T   I+  V         
Sbjct: 99  WMIEWLEGHKRNTIRPTSYMRYYNVIYKHIIPQIGSYNLLELTPDIIQKFVKYLCEDGKN 158

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
           +    +P++   ++  ++   + AV QE +  NPC  V  P ++         ++ ++ +
Sbjct: 159 DDTGLSPATVRSYMMILKSALELAVDQELMIKNPCRKVSLPPKRFHKPVYLEPDECKRLE 218

Query: 184 SF--WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK-------------- 225
                ++ +   +A    L +G+R  +        +   N +  ++              
Sbjct: 219 YVLLHTDDNPKSVAILLALKTGMRLGELAALKWGDVDFSNRVIHVRHSVQRVKTFEPEGP 278

Query: 226 --------TQKTGTIITVELPDGFMKLLAMTPI-----------GKETFFINNDKQKMNA 266
                   T+ T ++  + + +G  + L                     F N     ++ 
Sbjct: 279 KTKLVVSETKTTNSVRDIPMNNGQYEYLKAYHRMVVADSWGNINENTFVFQNQSGSFIDP 338

Query: 267 TQFSIWFKAKATKAGVNKS-AHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTK 324
             +  +FK    KA V +   H +R   ATI+A        L    G        + Y  
Sbjct: 339 RVYQQYFKVVLKKAKVKEVNFHALRHTFATIAASKNMQISVLSRILGHSNAALTLQLYIH 398

Query: 325 G---ADRIRLG 332
                DR  + 
Sbjct: 399 SITNQDRAEMS 409


>gi|295104601|emb|CBL02145.1| Site-specific recombinase XerD [Faecalibacterium prausnitzii SL3/3]
          Length = 383

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 51/345 (14%), Positives = 104/345 (30%), Gaps = 50/345 (14%)

Query: 27  KGHGRRIRLPYPHESTFI--------PAYMSALTGSTPKREYINSPRKKPTTLKWLISEY 78
           +  GR I+   P                    L     +  + N  ++   T + L   +
Sbjct: 15  RWEGRYIKARTPEGKIQWGYVYGTVYAEVKRVLIQKKAEAGFYNL-KRTDLTFEALAEVW 73

Query: 79  RKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVE------SRKHTP- 130
             S    ++  ++   +       ++          +    +   ++         H P 
Sbjct: 74  LHSQR-NAVKESTYAHYSYTLHKYLLPVLSKVPVTSLEESFLEQAMQQIIAPIDATHKPL 132

Query: 131 --SSAIQFLTSMRVLFKWAVRQEYVAINPCL-SVERPKRKTEGIRPWTKEDMQQFKSFWS 187
             SSA + L+ +R + K+A     +   P    V  PK   +   P +  + Q+   +  
Sbjct: 133 GNSSARECLSMLRRICKYAAHLRLIR--PMELEVALPKAIDKISAPLSPAEQQRLYQYVQ 190

Query: 188 EGSQPR-LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT----------------- 229
           E   PR +     L  GLR  + C          + ++K  +T                 
Sbjct: 191 ENPTPRKIGLLLGLELGLRIGEICGLQWGDFDLKLGTLKINRTVCRISCGNSHTKVVIQT 250

Query: 230 ----GTIITVELPDGFMKLLAMTP--IGKETFFIN-NDKQKMNATQFSIWFKAKATKAGV 282
                +   + +P   + +L      +    +F++ N+ +      +    KA   +A V
Sbjct: 251 PKTRTSRREIPIPKQLLIMLKKLRGCVSNAAWFLSGNESKPTEPRCYRKSIKAYLKQATV 310

Query: 283 NK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKG 325
            +   H +R   AT    AG     L    G    +   + Y   
Sbjct: 311 RQVRPHALRHTFATTCLQAGCDVKTLSELLGHANANITLQRYVHS 355


>gi|256842459|ref|ZP_05547961.1| transposase [Parabacteroides sp. D13]
 gi|298374954|ref|ZP_06984911.1| transposase [Bacteroides sp. 3_1_19]
 gi|256735815|gb|EEU49147.1| transposase [Parabacteroides sp. D13]
 gi|298267454|gb|EFI09110.1| transposase [Bacteroides sp. 3_1_19]
          Length = 402

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 43/271 (15%), Positives = 100/271 (36%), Gaps = 23/271 (8%)

Query: 88  AVNSRISFESYF---DQIIRKSGDFDYRKITTKHIRSGVESRKHT---PSSAIQFLTSMR 141
            V +  ++++     ++     GD    ++ +  + +     K T   P+++  ++ ++R
Sbjct: 127 KVRTAGTYQNALNSFERFRGHRGDIPLDEMDSNQMITYESWLKGTGVCPNTSSYYMRNLR 186

Query: 142 VLFKWAVRQEYV-AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLAFE 197
            ++  AV +  V   NP   V     KT+  R  +   +++ +            R  F 
Sbjct: 187 AIYNRAVSEGLVVQRNPFKHVYTGIDKTKK-RAVSLSVIRRIRDLDLNKKSLIFARDIFM 245

Query: 198 FLLYS-GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFF 256
           F  Y+ G+   D      + LQN I + + +KTG  + ++      +L+      + ++ 
Sbjct: 246 FSFYTRGMSFVDMAFLKKKDLQNGILTYRRKKTGQQLFIKWEKPMQELIDKYNTSETSYL 305

Query: 257 I----NNDKQKMN-----ATQFSIWFKAKATK--AGVNKSAHGVRKFSATISADAGATAH 305
           +    NN   + +     A + +   K    +   G+  + +  R   A+I+     +  
Sbjct: 306 LPIIQNNGVDEWHQYQNEAHRINRNLKHIGKQIGLGIPLTTYVARHAWASIAQSKNVSLP 365

Query: 306 ELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
            +    G  +      Y    D   +   NS
Sbjct: 366 VISEALGHDSEQTTRIYLASLDASIVDTANS 396


>gi|226325754|ref|ZP_03801272.1| hypothetical protein COPCOM_03567 [Coprococcus comes ATCC 27758]
 gi|225205878|gb|EEG88232.1| hypothetical protein COPCOM_03567 [Coprococcus comes ATCC 27758]
          Length = 311

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/263 (14%), Positives = 82/263 (31%), Gaps = 30/263 (11%)

Query: 87  LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS-SAIQFLTSMRVL-F 144
           +  ++  +  S   +           +I   ++++         S + ++ +  M  L F
Sbjct: 1   MKESTYKNRYSTIQKHFAYFYKKKVSEIEAINVQTWQLKLAKQFSPNYVRIVQGMLCLAF 60

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLL 200
             A+       NP   +   K K   I  WT E+ Q+  S   +G        ++F  L 
Sbjct: 61  DRAIILGLAKKNPARMIGNIKSKKVKIDFWTLEEFQKVISLLYKGDYYEHYLFISFWLLF 120

Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQKT-----------------GTIITVELP----D 239
            +G+R  ++       +      +   KT                  +  T+ +      
Sbjct: 121 MTGMRIGEAAALQWDDIDFETGMLIISKTLYYKTMNDYKFVEPKTQASNRTIYIDADTIK 180

Query: 240 GFMKLLAMTPI--GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATI 296
              +  A+         F ++ +    + T      +  A  AGV++   H +R   A++
Sbjct: 181 ELQEWKAVQAKVLPNCGFVLSYNSTPTSKTTLPRALEKLANLAGVHRIKIHALRHSHASL 240

Query: 297 SADAGATAHELMATYGWKTVDQA 319
               G     +    G + +   
Sbjct: 241 LISMGENPLLIKERLGHEKIQTT 263


>gi|212634737|ref|YP_002311262.1| Phage integrase [Shewanella piezotolerans WP3]
 gi|212556221|gb|ACJ28675.1| Phage integrase [Shewanella piezotolerans WP3]
          Length = 342

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 49/306 (16%), Positives = 90/306 (29%), Gaps = 63/306 (20%)

Query: 74  LISEYRKSAHWGSLAVNSRISF---ESYFDQIIRKSGDFDYRKITTKHIRSGVESR-KHT 129
            IS  R        +  +  S+     YF    + S   +            +  +   +
Sbjct: 30  YISAIRTEIRVRHYSYQTEKSYLYWNRYFINYCQISHGSEISASKIGQFLCYIAEQCNVS 89

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP--KRKTEGIRPWTKEDMQQFKSFWS 187
            S+  Q L ++    ++ ++ +         ++ P  K      +  + E+ +Q     S
Sbjct: 90  ASTQKQALCAIVFACRYVLKMD------TSGLDFPYAKAPKRIPQVLSTEEAKQIIGQMS 143

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGF---- 241
            G    L    L  +GLR  ++ R  V+ +   N    I   K        LP+      
Sbjct: 144 -GDH-FLIAAILFGAGLRLKEALRIRVKDIDLNNKSIFIHQGKGKKDRVCILPNELISPL 201

Query: 242 --------------------MKLLAMTPIGK----------ETFFINNDK---------- 261
                               M  L ++ I K          + FF    +          
Sbjct: 202 ELQIEKVRKIHNKDYKAGFGMAALPISLIKKYGASARKFHWQFFFPATRRCIHPSDGYIC 261

Query: 262 -QKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
              ++ T FS   +    KA ++K  +AH  R   AT     G     +    G   +  
Sbjct: 262 RHHIHPTAFSKALRLATKKAAIDKRVTAHTFRHSFATALLRKGYDLRTIQELMGHTDIKT 321

Query: 319 AETYTK 324
            + YT 
Sbjct: 322 TQIYTH 327


>gi|302039501|ref|YP_003799823.1| putative phage integrase [Candidatus Nitrospira defluvii]
 gi|300607565|emb|CBK43898.1| putative Phage integrase [Candidatus Nitrospira defluvii]
          Length = 437

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 47/332 (14%), Positives = 102/332 (30%), Gaps = 37/332 (11%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87
              +RI +  P +     A    +       +     +K   TL+     + +     + 
Sbjct: 35  RKAKRIGIGEPGKKAAKLAAQQ-IQARLALGQPAFQGQKSGMTLERYTEVFLERIE-HAR 92

Query: 88  AVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVES---RKHTPSSAIQFLTSMRVL 143
              + + +    ++ I+      D + IT + +++   +   R  +P +    +  +  L
Sbjct: 93  KRTTFVDYTKILNRDILPTLRGLDLQDITREKVKAMALAGLQRGQSPKTMQNIVRCLSSL 152

Query: 144 FKWAVRQEYVAINPCLSVER--PK-RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL- 199
              A+    V +NP L   +  PK  K   I P T+E++                     
Sbjct: 153 LSHALEDNLVTVNPALKPGKFLPKITKRHKITPLTREEVALLIETAKAKLPRYYPLFLCA 212

Query: 200 LYSGLRCSDSCRAGVQHLQNNI-----------FSIKTQKTGTIITVELPDGFMKLLAMT 248
           + +GLR  +        +               F + T K+G    V++     + L   
Sbjct: 213 VRTGLRMGELLALQWGDIDWQGRFIEVQRNYTHFRLTTPKSGESRRVDMSRELAQTLRDL 272

Query: 249 PIGKET-------------FFINNDKQKMNATQFSIW-FKAKATKAGVNK-SAHGVRKFS 293
              ++               F +     ++        F    TKA + K   H +R   
Sbjct: 273 LTERQIEAAASQWTDTPAWVFCSETGGLLHPHNLRDRVFYGLLTKAKLRKVRFHDLRHTF 332

Query: 294 ATISADAGATAHELMATYGWKTVD-QAETYTK 324
           A++    G +   +    G  ++    + Y  
Sbjct: 333 ASLLLQQGESLVYVKEQMGHSSIQVTVDLYGH 364


>gi|299529284|ref|ZP_07042724.1| integrase family protein [Comamonas testosteroni S44]
 gi|298722728|gb|EFI63645.1| integrase family protein [Comamonas testosteroni S44]
          Length = 364

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 39/231 (16%), Positives = 79/231 (34%), Gaps = 21/231 (9%)

Query: 107 GDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAV-RQEYVAINPCLSVER 163
           G     ++  + +    ++R    +  + ++ +  +  +   A     ++  NP   V R
Sbjct: 118 GKRRMAELDAQDLIQWRDARLKAVSKGTVLREIALVSHVLDTARQDWGWITSNPMADVRR 177

Query: 164 PKRKTEGIRPWTKEDMQQFKS--FWSEGSQPRL-------AFEFLLYSGLRCSDSCRAGV 214
           PK      R     +++       W+ G +           F   L +G+R S+      
Sbjct: 178 PKTPDHRERIIAGPEIRAMLRQLEWTRGRRATTTKHAVAHCFIAALQTGMRASEIANLEW 237

Query: 215 QHLQNNIFSIKTQ--KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW 272
             ++++   + T   KTG    V L     + + M     +      +     A      
Sbjct: 238 DDVRDSFCILHTGRTKTGKGRQVPLTHAARRNIEMMRGFHDVLVFGVE-----AASLDAL 292

Query: 273 FKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           F+    KA ++  + H  R  +AT  A       +L   +GW    +A TY
Sbjct: 293 FRRHRAKAELDGFTFHDTRHTAATRMAQV-LHVLDLCKAFGWTDTKRALTY 342


>gi|227357956|ref|ZP_03842298.1| fimbriae recombinase [Proteus mirabilis ATCC 29906]
 gi|227161691|gb|EEI46723.1| fimbriae recombinase [Proteus mirabilis ATCC 29906]
          Length = 205

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 56/179 (31%), Gaps = 15/179 (8%)

Query: 166 RKTEGIRPWTKEDMQQFKSFWSEG---SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-- 220
            K +  +  T+ ++        EG    +    F      G R S+ C   +  +     
Sbjct: 16  TKMKQRKFLTRFEVNAILKQAKEGRYPERDYCMFLMCFLHGFRVSELCNLTLSDIDLESR 75

Query: 221 IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF--------FINNDKQKMNATQFSIW 272
           I  ++  K G   T  + D   + L      +E +        F++     ++  Q    
Sbjct: 76  ILYVRRLKGGLSTTQPIIDEEYEALCNWLKSRENWRESDSEWVFLSQKTGPISRQQVYGL 135

Query: 273 FKAKATKAGVNKSAHG--VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            +    KA V+ S H   +R       AD G     +    G + +     YT    + 
Sbjct: 136 LRRLGKKANVSISPHPHMLRHACGYALADLGRDTRLIQDYLGHRNISHTVIYTASNSKR 194


>gi|154487092|ref|ZP_02028499.1| hypothetical protein BIFADO_00932 [Bifidobacterium adolescentis
           L2-32]
 gi|154084955|gb|EDN84000.1| hypothetical protein BIFADO_00932 [Bifidobacterium adolescentis
           L2-32]
          Length = 425

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 58/368 (15%), Positives = 117/368 (31%), Gaps = 67/368 (18%)

Query: 22  IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKS 81
            + FR+  G   R P   +  FI A       +  +     +  ++   L    S Y K 
Sbjct: 29  RWEFRREIG---RDPATGKRRFIAASGRTKADARERFGAKVAEMERTGLLPGAKSPYLKD 85

Query: 82  AHWGSL-------AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE--SRKHTPSS 132
                L          +  +        +   G      +T  HIR  +   S++  PS+
Sbjct: 86  YAERWLEEYRLNVKPTTYRTRAGRIHACMEVIGCIRLTDLTPDHIRKCMRVLSKRLAPST 145

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF-KSFWSEGSQ 191
                 S++++   A  +E + ++PC  V+ P+ +    R  + +  +Q  ++  + G++
Sbjct: 146 LKDHFVSLKMMLDQAELEELIPVDPCRRVKPPRVEPTETRILSPDQPKQLIEAVPNRGAK 205

Query: 192 PR-------------LAFEFLLYSGLRCSDSCRAGVQHLQN------------------- 219
            R             L FE    +G+R  +        L+                    
Sbjct: 206 RRGPALTVDVDESWMLLFELAFAAGMREGERYALMPYELEQRDGVPGINVQQQIQQYGKP 265

Query: 220 ---------------NIFSIKTQKTGTI-ITVELPDGF-----MKLLAMTPIGKETFFIN 258
                           I  + T KT      V +          ++  +    ++  F N
Sbjct: 266 EDAVIPAWLKAEHLYGILWLTTPKTHAAHRFVPISTSLWQRLWARIKRLGIGPRDLIFTN 325

Query: 259 NDKQK-MNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVD 317
           +      ++T+   W KA    +    + H  R ++A+++A A        A  G  ++ 
Sbjct: 326 SRGNPVRSSTERYNWNKALKAASLPPVTIHSARHWTASMTARANMPDDARTAIMGHTSIT 385

Query: 318 QAETYTKG 325
               YT  
Sbjct: 386 MTNHYTHR 393


>gi|126665397|ref|ZP_01736379.1| integrase/recombinase [Marinobacter sp. ELB17]
 gi|126669107|ref|ZP_01740037.1| integrase/recombinase [Marinobacter sp. ELB17]
 gi|126626434|gb|EAZ97101.1| integrase/recombinase [Marinobacter sp. ELB17]
 gi|126630025|gb|EBA00641.1| integrase/recombinase [Marinobacter sp. ELB17]
          Length = 312

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 45/287 (15%), Positives = 93/287 (32%), Gaps = 41/287 (14%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132
            ++ EY        +   +     +      R++GD     +T   IR+ ++      S 
Sbjct: 5   DVVDEYVAYKRALGMRFYTDA---NILRSFCRRAGDVPLISVTANQIRTFLDGDTPLSSF 61

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG-IRPWTKEDMQQFKSFWSEGSQ 191
             +  T++  L+++A+ + YV  +P L   RPK         ++  ++++          
Sbjct: 62  WQRKYTALSGLYRFALPRGYVDASP-LPCRRPKLPPPLVPYIYSPAELKRLLDATPGACG 120

Query: 192 P---------RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDG 240
                     R     L  + LR  ++ R  +  +  +   +  QKT       V L   
Sbjct: 121 RQVPMDAYVFRTLILLLYGACLRLGEALRLTMNDVDLDQAILCIQKTKFYKTRLVPLGQD 180

Query: 241 FMKLLAMTPIGKET---------FFINNDKQKMNATQFSIWFKAKATKAGVNK------- 284
              +L    + +           FF   D   ++ +     F+   ++AGV +       
Sbjct: 181 LNLVLKQYALRRNATHCKEATAPFFCFRDGHTLSQSAVRSAFRRLRSQAGVQRNDSARYQ 240

Query: 285 -SAHGVRKFSATI----SADAGATAH----ELMATYGWKTVDQAETY 322
              H +R   A         +GA       +L    G   +   + Y
Sbjct: 241 PRLHDLRHTGAVHRLVFWYRSGADLQRLLPQLATYLGHIDLSATQRY 287


>gi|91200146|emb|CAJ73190.1| similar to site-specific tyrosine recombinase [Candidatus Kuenenia
           stuttgartiensis]
          Length = 357

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 48/307 (15%), Positives = 95/307 (30%), Gaps = 58/307 (18%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----KHT 129
           L+   R++      +  +  ++  +  + I         ++    I   +       K +
Sbjct: 18  LMDRLREALCSRHYSRRTEQTYCHWVKRFIFFHKVRHPAEMAEPEINDFLTHLAVKEKVS 77

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            S+  Q L+++  L++  + +E   +     V R ++ T      T+++++   S  SE 
Sbjct: 78  ASTQNQALSALLFLYRHVIGREVGDL---GKVIRARKPTRLPVVMTRDEVKAVLSNLSE- 133

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTII-------------- 233
               L    +  +GLR  +  R  VQ +    N   ++  K                   
Sbjct: 134 -DKWLIASLMYGAGLRLMECLRLRVQDIDFSRNEILVRDGKGAKDRITMLPELLKKPLQD 192

Query: 234 ------------------TVELPDGFMKLLAMTPIG-------------KETFFINNDKQ 262
                              V++PD   +     P               K T      + 
Sbjct: 193 HLRKVKAIHEKDLAEGWGRVQMPDALDRKYPNAPADWRWQWVFPQENRWKNTKTTEEGRH 252

Query: 263 KMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
            M+ +      K   T +G+ K A  H  R   AT   ++G     +    G K V    
Sbjct: 253 HMDESIMQRTVKEAVTSSGITKRASCHTFRHSFATHLLESGYDIRTIQELLGHKDVKTTM 312

Query: 321 TYTKGAD 327
            YT   +
Sbjct: 313 IYTHVLN 319


>gi|317477477|ref|ZP_07936703.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
 gi|316906341|gb|EFV28069.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
          Length = 586

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 40/285 (14%), Positives = 94/285 (32%), Gaps = 36/285 (12%)

Query: 86  SLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGVESRKHT----PSSAIQ 135
             +  +   +++   ++ R         D  + ++T + IR+     K       ++ ++
Sbjct: 128 DYSPVTINRYKNVVKKLQRLIPSYYGKEDITFHELTPEFIRAFDIYLKTEGGLCRNTIVR 187

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WSEGSQP 192
           ++   +     A+ +E++  NP    +  + +T+     T +++Q               
Sbjct: 188 YMKCFKKFTNMALAKEWMRKNPFYGYKMEQDETD-PVFLTYDELQAVMKKKFTIPRLELV 246

Query: 193 RLAFEFLLYSGLRCSDSCRAG-----VQHLQNNIFSI------KTQKTGTIITVELPDGF 241
           R  F F  ++GL  SD            +L +             +K  +I  + L    
Sbjct: 247 RDIFVFACFTGLAFSDVATLSGENLVQDNLGDWWIRKGRVKLEHRRKASSISNIPLLPVP 306

Query: 242 MKLLAMTPIGKETFFINNDK---QKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATI 296
           + +L      +E             M   + + + K  A   G+ K  + H  R   +TI
Sbjct: 307 LAILEKY---REHPICVKKGCCLPVMCNQKMNSYLKEIADFCGIKKNLTTHSARHTFSTI 363

Query: 297 SADAGATAHELMATYGWKTVDQ-AETYTK--GADRIRLGIKNSRR 338
               G    +++   G +      + Y      D+ R      ++
Sbjct: 364 MCRRGVPREDIIIATGHEDTQMLDKIYAHLTAKDKSRKVTTAFKK 408


>gi|189467368|ref|ZP_03016153.1| hypothetical protein BACINT_03756 [Bacteroides intestinalis DSM
           17393]
 gi|189435632|gb|EDV04617.1| hypothetical protein BACINT_03756 [Bacteroides intestinalis DSM
           17393]
          Length = 408

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 45/266 (16%), Positives = 91/266 (34%), Gaps = 35/266 (13%)

Query: 90  NSRISF---ESYFDQIIR---KSGDFDYRKITTKHIRSG----VESRKHTPSSAIQFLTS 139
            +   +     +  + I+      D    +IT   I         + K + ++  +F+  
Sbjct: 129 ATYRKYEVTRRHLAEFIQSKYNISDIAINEITPMFITDFELYLRTTCKCSYNTTAKFMQF 188

Query: 140 MRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQQFKSFWSEGSQ---PRLA 195
            + +   A     +  +P  + + R ++   G    T+++++          +    R  
Sbjct: 189 FKRIILIARNNGILIGDPFANYKIRLEKVDRGY--LTEDEIKIILKKKMVSERLENVRDL 246

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQ---NN--IFSIKTQKTGTIITVELPDG----FMKLLA 246
           F F  ++GL   D      ++++   +       K QKT T + V L D       K   
Sbjct: 247 FVFSCFTGLAYIDVANLTQENVRKSFDGKLWIITKRQKTNTDVNVPLLDIPKMILKKYKG 306

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA-GAT 303
             P GK    I+N K        + + K  A   G+ K  + H  R   AT +  A G  
Sbjct: 307 KLPNGKILPVISNQK-------LNAYLKEIADVCGIKKNLTFHLARHTFATTTTLAKGVP 359

Query: 304 AHELMATYGWKTVDQAETYTKGADRI 329
              +    G   ++  + Y +  +  
Sbjct: 360 IETVSKMLGHTNIETTQIYARITNNK 385


>gi|254884944|ref|ZP_05257654.1| transposase [Bacteroides sp. 4_3_47FAA]
 gi|319642539|ref|ZP_07997189.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_40A]
 gi|254837737|gb|EET18046.1| transposase [Bacteroides sp. 4_3_47FAA]
 gi|317385891|gb|EFV66820.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_40A]
          Length = 409

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 39/282 (13%), Positives = 96/282 (34%), Gaps = 28/282 (9%)

Query: 86  SLAVNSRISF---ESYFDQIIR---KSGDFDYRKITTKHIRSG----VESRKHTPSSAIQ 135
             A  +  ++        + I+   K  D  + ++  + IR      +E +K    +   
Sbjct: 128 DRAPTTMSTYVYTRRTLAEFIKTEFKVSDLAFGQLNEQFIRDYQDFCLEKKKLAMETVRH 187

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP--- 192
           +L+ ++ + + A ++ +         + PK+K    +  ++E+ ++ +       +    
Sbjct: 188 YLSILKKICRIAYKEGHSEKYHFCHFKLPKQKETTPKALSRENFEKLRDLEIPEKRRSHV 247

Query: 193 --RLAFEFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVELPDGFMKLL 245
             R  F F  Y+G   +D+     ++L  +         + +KT  +  V+L    + L+
Sbjct: 248 ITRDLFLFACYTGTAYADAVSITRENLFQDDEGSLWLKYRRKKTDYLGRVKLLPEALALI 307

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATIS-ADAGA 302
                              +        K+    AG+++    H  R   A++   + G 
Sbjct: 308 GKYRDDTRITLF----PPQDYHTLRANMKSLRLMAGLSQDLVYHMGRHSFASLVTLEEGV 363

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
               +    G   +   + Y +     RL     R + +  D
Sbjct: 364 PIETISKMLGHSNIKTTQIYAR-VTPKRLFEDMDRFVEATRD 404


>gi|227329213|ref|ZP_03833237.1| phage integrase [Pectobacterium carotovorum subsp. carotovorum
           WPP14]
          Length = 343

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 49/329 (14%), Positives = 99/329 (30%), Gaps = 35/329 (10%)

Query: 19  GKIIYYFRK--GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76
           G+    FR      +R+R  +P +   +  +         ++ ++   ++    L  +I 
Sbjct: 9   GEWRADFRINGRDSKRVRKTFPTKGEAV-VFEQFTLNEASEKPWLG-EKEDRRRLSEVID 66

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--------FDYRKITTKHIRSGV----- 123
            +    H    ++++  S       +    GD         D+     K +R  +     
Sbjct: 67  LWY---HLHGQSLSAISSRMGKLKIVCDGLGDPIASRFTAKDFAHYRDKRLRGEISNGYH 123

Query: 124 ---ESRKHTPSSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDM 179
              E     P +  + L  +  +F    R   +   NP   V   K + + +   T   +
Sbjct: 124 DSPERWAVKPITVNRELQYLTAVFSELKRLGEWTLPNPLDGVRIFKEEDKEMAWLTHPQI 183

Query: 180 -QQFKSFWSEGSQPRLAF-EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237
            +  ++  S G++      +  L +G R S++       L     S    K     TV +
Sbjct: 184 NELLRACESYGNEDLTWIVKVCLSTGARWSEAENLTRSQLSPFKVSFFKTKGKKNRTVPI 243

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATIS 297
                  LA+    +  F       K     F       +      +  H +R   A+  
Sbjct: 244 SQWLHDELAL--RQRRMF-------KPCYQNFKKVLAMTSITLPDGQKTHVLRHTFASHF 294

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGA 326
              G     L    G   + +   Y   A
Sbjct: 295 MMNGGNILVLQRILGHANIRETMKYAHFA 323


>gi|160947471|ref|ZP_02094638.1| hypothetical protein PEPMIC_01405 [Parvimonas micra ATCC 33270]
 gi|158446605|gb|EDP23600.1| hypothetical protein PEPMIC_01405 [Parvimonas micra ATCC 33270]
          Length = 356

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/253 (13%), Positives = 73/253 (28%), Gaps = 31/253 (12%)

Query: 101 QIIRKSGDFDYRKITTKHIRSGVES---------RKHTPSSAIQFLTSMRVLFKWAVRQE 151
           +II         +IT   I               + ++ +        +  +   A +  
Sbjct: 88  KIIPYFAKKSIAEITAPDILQWQNELLKKSDGEGKTYSQTYLRTIQNQLNAILNHASKYY 147

Query: 152 YVAINPC-LSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210
            +  NP   + +  K K + +  WTKE+ ++F            AFE L + G+R  +  
Sbjct: 148 GLTSNPAHKTAKMGKSKAQEMLFWTKEEYEKFAESVKSKPASYYAFEILYWCGIREGELL 207

Query: 211 RAGVQHLQNNIFSIKTQKT----------------GTIITVELPDGFMKLLAMTPIGKET 254
                        +   K+                 +  T++LP      ++        
Sbjct: 208 ALTKDDFDLEKKILTISKSFQRLKGKDYITSPKTEKSNRTIQLPQFLCDEMSDFF--GMY 265

Query: 255 FFINNDKQ--KMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATY 311
           + +N   +      +            +GV +   H +R        + G +   +    
Sbjct: 266 YHLNAKSRLFNFTKSYLHHEMDRGCKLSGVKRIRVHDLRHSHVAYLIEQGFSPVVIAERL 325

Query: 312 GWKTVDQAETYTK 324
           G +++     Y  
Sbjct: 326 GHESISITLNYAH 338


>gi|307944294|ref|ZP_07659635.1| integrase family protein [Roseibium sp. TrichSKD4]
 gi|307772640|gb|EFO31860.1| integrase family protein [Roseibium sp. TrichSKD4]
          Length = 610

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 50/336 (14%), Positives = 100/336 (29%), Gaps = 63/336 (18%)

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG-DFDYRKITTKH----- 118
           R +  ++  LI  + K      L  ++   +   F  +    G DF  + +T +H     
Sbjct: 263 RDEHVSIGTLIDRFLKDPRRSDLTESADKKYIVTFRVLKEVVGADFPVKDVTRRHCAEVQ 322

Query: 119 --------------------------IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEY 152
                                     +R+       +  S   +  ++   F +A+ +  
Sbjct: 323 ELIAGLPKNMVKLKPYDGLDLRACIALRAKRNDPALSAGSVKVYTQTLSAFFNYAIDRGV 382

Query: 153 VAINPCLSVE-RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF------EFLLYSGLR 205
           +  NP   +     R     RP+  E + Q  +  S+ S  +            ++SG+R
Sbjct: 383 LEHNPASRLTLSGGRSERVRRPYKIEHINQILAGLSDWSSEKTISWRYWVPLIAIFSGMR 442

Query: 206 CSDSCRAGVQHLQNNI-----FSIK------TQKTGTIITVELPDGFMKLLAMTPIGKE- 253
             +     V  + +       F +        +  G   TV +    + L  +  I +  
Sbjct: 443 MGEIVSLHVSEVVDKGALGTAFQLTHSADRPLKNKGAERTVPVHPALIDLGLLGFIDQRV 502

Query: 254 ---TFFINNDKQKMNATQFSIWFKAK-----ATKAGV---NKSAHGVRKFSATISADAGA 302
              +  +  D    +  + +  F+ +       K G+     S H  R        + G 
Sbjct: 503 KEKSLLLFPDLNGNSHEERAHAFQRRYEYFQKRKLGIRDQGVSFHSFRHNFRDALRECGV 562

Query: 303 TAHELMATYGWKTVDQAE-TYTKGADRIRLGIKNSR 337
                 A  GW      E  Y +G     L    S+
Sbjct: 563 PIDTTRALGGWSRGGGIEFHYGEGTSFATLAKWMSK 598


>gi|294776003|ref|ZP_06741499.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
 gi|294450141|gb|EFG18645.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
          Length = 429

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/273 (13%), Positives = 90/273 (32%), Gaps = 36/273 (13%)

Query: 86  SLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGVESRKHT----PSSAIQ 135
             +  +   +++   ++ R         D  + ++T + IR+     K       ++ ++
Sbjct: 146 DYSPVTINRYKNVVKKLQRLIPSYYGKEDITFHELTPEFIRAFDIYLKTEGGLCRNTIVR 205

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WSEGSQP 192
           ++   +     A+ +E++  NP    +  + +T+     T +++Q               
Sbjct: 206 YMKCFKKFTNMALAKEWMRKNPFYGYKMEQDETD-PVFLTYDELQTLMKKKFTIPRLELV 264

Query: 193 RLAFEFLLYSGLRCSDSC----------RAGVQHLQNNIFSI-KTQKTGTIITVELPDGF 241
           R  F F  ++GL  SD              G   ++     +   +K  +I  + L    
Sbjct: 265 RDIFVFACFTGLAFSDVATLSGENLVQDNLGDWWIRKGRIKLEHRRKASSISNIPLLPVP 324

Query: 242 MKLLAMTPIGKETFFINNDK---QKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATI 296
           + +L      +E             M   + + + K  A   G+ K  + H  R    T 
Sbjct: 325 LAILEKY---REHPVCIKKGCCLPVMCNQKMNSYLKEIADFCGIKKNLTTHVARHTFGTT 381

Query: 297 --SADAGATAHELMATYGWKTVDQAETYTKGAD 327
              A+      ++    G  +    + Y +  +
Sbjct: 382 VTLANN-VPLQDVSVMLGHASTRMTQHYARVMN 413


>gi|289549678|ref|YP_003470582.1| Tn554-related, transposase A [Staphylococcus lugdunensis HKU09-01]
 gi|289179210|gb|ADC86455.1| Tn554-related, transposase A [Staphylococcus lugdunensis HKU09-01]
          Length = 367

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 40/322 (12%), Positives = 93/322 (28%), Gaps = 72/322 (22%)

Query: 78  YRKSAHWGSLAVNSRISFES-------YFDQIIRKSGDFDYRKIT------------TKH 118
           Y K       + N+  ++         Y + I +   D  +  +              K 
Sbjct: 30  YLKYLESVDKSENTLKTYAYCLKRYFMYLELIDKNHNDATFDDLVDFVMWLKSPQRYKKV 89

Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER--------------- 163
           I         +  +    +T +   + +  R +   ++   SV +               
Sbjct: 90  IYKDRLLNSKSARTINLTITVVTNFYDYLFRTKKFNVDIAKSVLKESNRKSSYKSFLDHV 149

Query: 164 ------------PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCR 211
                        K   E ++  +  ++++  +  S+  + +   + L  +GLR  +   
Sbjct: 150 NTNNLLFTNTLKVKEPREKMKILSTSEIKELIN-ASKNLRDKFMIQLLYETGLRIGELLS 208

Query: 212 AGVQHLQ-----NNIFSIKTQKTGTIIT-------VELP--------DGFMKLLAMTPIG 251
             +  ++      +   +KT+K             + +         D   ++L      
Sbjct: 209 LYIDDIKYDLTNGHQIILKTRKNKNGARLKSGERKIYISQSLIDLYDDYLYEVLDEVSTS 268

Query: 252 KETFFINNDKQ----KMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHEL 307
            E  FI    +     ++    +  FK    K G+N   H +R   ATI  +      ++
Sbjct: 269 SEFLFIKIRGKHVGDPLDYNDVNSIFKRLRKKTGINVHPHLLRHTHATIFYNKSKNIKQV 328

Query: 308 MATYGWKTVDQAE-TYTKGADR 328
               G   +      Y    D+
Sbjct: 329 QERLGHSNIQTTMNLYIHNDDQ 350


>gi|268319636|ref|YP_003293292.1| hypothetical protein FI9785_1163 [Lactobacillus johnsonii FI9785]
 gi|262398011|emb|CAX67025.1| int [Lactobacillus johnsonii FI9785]
          Length = 366

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/282 (12%), Positives = 80/282 (28%), Gaps = 35/282 (12%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE-----S 125
                +E+ K+    S+A N+   +      +    G    + I     +  +       
Sbjct: 62  FADYYNEWVKTYKENSVAPNTLRQYILASTHLQHYFGQTTIKSINRSKYQQFINWFGKNH 121

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP--WTKEDMQQFK 183
            K T     +F  S       A+    +  N    +       +  +      +D+ +  
Sbjct: 122 AKSTVVKTNRFYKSCVSS---AIEDGIITRNFTDHITLAYNNDKAFKVTYLQADDITRLF 178

Query: 184 SFWSEGSQPRL----AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--------- 230
           ++  +  +P+         ++ +GLR S+       ++  +   IK +K+          
Sbjct: 179 NYLYDHRRPQYTTSYMLMLMIVTGLRESEVAGLTWNNIYFSENLIKVEKSWVYSQKDYGP 238

Query: 231 -----TIITVELPDGFMKLLAMTPIGKET--FFINND----KQKMNATQFSIWFKAKATK 279
                +   V +P   M  +       +   F+  +       K       I  K     
Sbjct: 239 TKNETSQRIVSVPQIMMDCIKELKGNHKAKVFWYPSYKIFPGHKSLGAGLQIALKNLNIS 298

Query: 280 AGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
           A      H +R     +   A    +++    G  T    E 
Sbjct: 299 A-PGFHPHSLRHSQVALLLQANIPIYDIAKRLGHSTTRTTEQ 339


>gi|187932650|ref|YP_001885119.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Clostridium botulinum B str. Eklund 17B]
 gi|187720803|gb|ACD22024.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Clostridium botulinum B str. Eklund 17B]
          Length = 386

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 53/359 (14%), Positives = 114/359 (31%), Gaps = 51/359 (14%)

Query: 17  RHGKIIYY--FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK--PTTLK 72
           + G + YY  +   +G + ++      T   A          +   +  P++      LK
Sbjct: 7   KKGNVWYYRYYEYVNGVKKQIERKGGITKKEALQKLNEEIYRQNNGLLKPKEILLKDYLK 66

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132
             + +Y K  +  +  +  + +   Y +  +      D + I  +   S ++  K + ++
Sbjct: 67  IWLEDYVKPNNSENTYIKYKGTVNKYINPQLGLIKLCDLKVINIEQFLSKLKKTKLSLTT 126

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----E 188
             +    +      A++ + +  NPC  V+ PKR        T E++    +  +    E
Sbjct: 127 IQKHYLVLNGALNKAIKLQMLNDNPCKYVDTPKRSKYKASILTFEELHSIYTNLNTKIYE 186

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQ-------------KTGTII 233
               +L  +  + +GLR  + C      +   N I ++ T              KT +  
Sbjct: 187 DYIMKLGMDLTIETGLRRGEMCGLQWSDIDFDNKILNVNTALIRVNNDYKISNLKTDSSY 246

Query: 234 T-VELPDGFMKLLAM--------------------TPIGKET----FFINNDKQKMNATQ 268
             + L +  +K+L                         G  T     F   + + +  + 
Sbjct: 247 RKLPLSNEIIKILKSHKSKQNINKIKYGNNFVYSNKFDGDSTEYNLIFTWENGRYIIPSN 306

Query: 269 FSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTK 324
           F    K       + K    H +R  +ATI      +   +    G   +      Y  
Sbjct: 307 FLQRLKRLCKYCKIEKNIRWHDLRHSNATILLKNKISMKVIQERLGHSLMQTTSDIYAH 365


>gi|171057459|ref|YP_001789808.1| integrase family protein [Leptothrix cholodnii SP-6]
 gi|170774904|gb|ACB33043.1| integrase family protein [Leptothrix cholodnii SP-6]
          Length = 417

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 44/274 (16%), Positives = 93/274 (33%), Gaps = 24/274 (8%)

Query: 85  GSLAVNSR-ISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKH---TPSSAIQFLT 138
             LA  SR +        +  + G    D + IT +H+R     +      P+ A   ++
Sbjct: 136 RGLAPKSRTMVLRIVGRLLAERFGGHAVDIKAITPEHVRRFFAEQAALHSKPAGAGSVVS 195

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKR--KTEGIRPWTKEDMQQFKSFWSEGSQP-RLA 195
           S+R  F++      +      ++  P     +   +  T E++ Q     +   +  R A
Sbjct: 196 SLRGYFRYRASLGDLVHGLIGALAYPANWALSSLPKKLTDEEVAQLVGSLNNPCRAMRRA 255

Query: 196 FEF---LLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAM--- 247
                  L  GLR  +  +  +  +       +++  K   +  + LP    + +A    
Sbjct: 256 CAIVRCALDLGLRSIEVAQLSLDDIDWHAGTITLRHTKGRRVDILPLPVATGEAIARYLE 315

Query: 248 ---TPIGKETFFINN---DKQKMNATQFSIWFKAKATKAGVNKS-AHGVRKFSATISADA 300
                      F+ N       + A    I  +    +AG+  + +H +R   A     +
Sbjct: 316 LERPKTTNRAIFVRNVAPRDAPIGADLIRITIRQAYARAGLPYTRSHLLRHTMANRLLAS 375

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIK 334
           G+T  E+      ++++    Y K   R    + 
Sbjct: 376 GSTLKEVADVLRHRSLNTTMIYAKLDSRSLAAVA 409


>gi|160881271|ref|YP_001560239.1| integrase family protein [Clostridium phytofermentans ISDg]
 gi|160429937|gb|ABX43500.1| integrase family protein [Clostridium phytofermentans ISDg]
          Length = 438

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 42/313 (13%), Positives = 92/313 (29%), Gaps = 61/313 (19%)

Query: 83  HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI-RSGVESRKHTPSSAIQFLTSMR 141
           HW     +++I  +S     +    DF +  I+   + +  +++ K             +
Sbjct: 122 HWEKYYEDTKIVRKSIDRITVEDIEDFFHSCISDYDMTKKDLDNMKL----------IFK 171

Query: 142 VLFKWAVRQEYVAINPCLSV-------ERPKRKTEGIRPWTKEDMQQFKSFW-------S 187
            L K+A ++  +  NP   +       + P    +  R +  E+ ++             
Sbjct: 172 DLMKYAKKKGLILSNPYDDIEIKLNGCKPPNNPKDESRVYLPEEKEKLFLQLNKRLMQMP 231

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ------------------ 227
             +   + F  L   GLR  ++       +        I                     
Sbjct: 232 FETDAYVVF-LLFKLGLRIGEAVALKWVDIDWEAREIHIHRMESRVEDENGKLKVAICEY 290

Query: 228 -KTGTII---TVELPDGFMKLLAMTPI--------GKETFFINNDKQKMNATQFSIWFKA 275
            K  +      + L D  + L                +  F + + +           +A
Sbjct: 291 TKKKSPAGDRYLPLSDYEINLFQAVKRINEEAGYSDGDFIFCDKEGRTKIRE-VDNCIRA 349

Query: 276 KATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY-TKGADRIRLGI 333
           +  +AG+  KSAH +R+  A+          ++    G        TY      + +   
Sbjct: 350 QCRRAGIEVKSAHDIRRTVASEMRRKKVEIEDIQWYLGHNDEATTRTYILNNQGKQKTSE 409

Query: 334 KNSRRISSVVDSD 346
           +    +S +  SD
Sbjct: 410 QIVNALSEMNGSD 422


>gi|258515456|ref|YP_003191678.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771]
 gi|257779161|gb|ACV63055.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771]
          Length = 345

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 44/302 (14%), Positives = 94/302 (31%), Gaps = 41/302 (13%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--------FDYRKITTKHIRSGVESR 126
           +  Y         +  +  S++       R   D        F +     K I+  +   
Sbjct: 20  LETYL--PRQLGRSSKTIKSYKDSLTVFRRYLYDECHISVAAFKFADCNQKCIQEFIIYL 77

Query: 127 KH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP---KRKTEGIRPWTKEDMQ 180
           K    +P +  Q LT+++    +A  ++    +  LS+ +    K   +     T+E + 
Sbjct: 78  KDNNNSPGTCNQRLTALKSYLWFAADRDIAVQSVALSISKIPQCKIPKKEKETLTEEALA 137

Query: 181 QFKSFWS---EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---NNIFSIKTQKTGTIIT 234
                      G + R+    L  S +R  +     ++ L    +N +   + K      
Sbjct: 138 AILQQPPNTKMGLRDRVIMILLYDSAVRLDELLCLTLKDLSLRTDNPYIRISGKGNKERI 197

Query: 235 VELPDGFMKLLAMTPIG--------KETFFINNDKQ---KMNA-------TQFSIWFKAK 276
           V +     + L               +  FI   K    +M+         Q++   + K
Sbjct: 198 VAITPKTAEHLKQYLSVYHKNDLNMDQYLFITRIKGVTDRMSPGNVERFIKQYANSAREK 257

Query: 277 ATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKN 335
             +  +    H  R+  AT     G     +    G  + +  + Y K   + +R  I++
Sbjct: 258 CLQIPLKVYPHMFRRTRATDLYQNGVELELVSRILGHSSTETTKVYAKPSIEMLRKAIES 317

Query: 336 SR 337
             
Sbjct: 318 VE 319


>gi|125625033|ref|YP_001033516.1| phage integrase [Lactococcus lactis subsp. cremoris MG1363]
 gi|124493841|emb|CAL98834.1| phage integrase [Lactococcus lactis subsp. cremoris MG1363]
 gi|300071839|gb|ADJ61239.1| phage integrase [Lactococcus lactis subsp. cremoris NZ9000]
          Length = 393

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 51/348 (14%), Positives = 114/348 (32%), Gaps = 53/348 (15%)

Query: 48  MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKS 106
             A+         I   +      + L   + +S    ++  NS    ++Y  + I+   
Sbjct: 48  HQAINDFINNGSTIAREKVVFDNFEALALSWFESYK-LTVKENSISVADNYLRNYILPPI 106

Query: 107 GDFDYRKITTKHIRSGVESRKHTPSSA---------------IQFLTSMRVLFKWAVRQE 151
           G +   KIT   ++  V    +  ++A                  L  ++ +  + ++  
Sbjct: 107 GSYKLSKITPMLLQELVNKWANNANTAEIINGKRERGKCKDYKLLLNFIKRILDYGMQLG 166

Query: 152 YVAINPCLSVERPKRKT---EGIRPWTKEDMQQFKSFWS------EGSQPRLAFEFLLYS 202
            +  N  + V  PK KT   + I+ +  E+++QF  +        +  + +  ++ LL +
Sbjct: 167 AIEDNSAIKVFPPKLKTRTVKKIKYFDNEELKQFLLYLDTLEPSTDNRKSKTLYKLLLAT 226

Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQKT---------------GTIITVEL----PDGFMK 243
           GLR  ++       +  N   +   KT                +  +V L     +   +
Sbjct: 227 GLRVGEAMALSWSDIDFNNHYLSVSKTLIQQSNLIQDSAKTKESNRSVFLDNDTLESLKE 286

Query: 244 LLAMTPIGKETF---FINNDKQKMNATQ--FSIWFKAKATKAGVNKSAHGVRKFSATISA 298
                  G  +     + +  QKM + +       +        N   HG R   A++  
Sbjct: 287 WRKYQNDGAISLHDSLVFSYHQKMRSYEIERQKLVRHFKNAGVPNIGFHGFRHTHASLLM 346

Query: 299 DAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGIKNSRRISSVVDS 345
           +      E+    G         TY+  A       + + + SS++ +
Sbjct: 347 NNDVNPKEIQRRLGHADYAITMNTYSHLAKSKEK--ETAEKFSSILKA 392


>gi|170019103|ref|YP_001724057.1| integrase family protein [Escherichia coli ATCC 8739]
 gi|169754031|gb|ACA76730.1| integrase family protein [Escherichia coli ATCC 8739]
          Length = 398

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 40/270 (14%), Positives = 92/270 (34%), Gaps = 23/270 (8%)

Query: 85  GSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKHTPS--SAIQFLTSMR 141
            S+  +         ++ +    G+   ++I  + +   +E  K   +  +  + +  + 
Sbjct: 120 KSVTPDYAKDIWRSLEKDVFPAVGEMPVQQIKARTLVEALEPVKARGALETVRRLVQRIN 179

Query: 142 VLFKWAVRQEYVAINPCLSVERP--KRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLAF 196
            +  +AV    +  NP   V     K K + +     E++ +        +     R   
Sbjct: 180 EIMIYAVNTGLIDANPASGVGMAFEKPKKQNMPTLRPEELPKLMRSLVMSNLSIPTRCLI 239

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIITVELPDGFMKLLAMTP--- 249
           E+ L + +R S++     + +  +           K      + L    +++L +     
Sbjct: 240 EWQLLTLVRPSEASSTRWEEIDLHAKLWTIPAERMKAKREHIIPLSSQALEILNVMKPIS 299

Query: 250 IGKETFFI--NNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHEL 307
             +E  F   N+ K+ MN+   +   K      G    AHG+R  ++T   +AG     +
Sbjct: 300 AHREYVFPSRNDPKKPMNSQTANAALKRIGF--GGKLVAHGLRSIASTAMNEAGLNPDVI 357

Query: 308 MATYGWKTVDQAET-YTKG---ADRIRLGI 333
            +       ++    Y +      RI L  
Sbjct: 358 ESALAHSDKNEVRKAYNRSTYLVQRIELMD 387


>gi|78223999|ref|YP_385746.1| integron integrase [Geobacter metallireducens GS-15]
 gi|78195254|gb|ABB33021.1| Integron integrase [Geobacter metallireducens GS-15]
          Length = 449

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 82/289 (28%), Gaps = 57/289 (19%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT----PSSAIQFLTSMRVL 143
           +  +  ++  +  +  R   +   ++++T  ++  +           S+  Q   S+  L
Sbjct: 150 SRKTLKTYALWSRKFQRFLKNKPPQELSTADVKEYLTYLAVKCNVAASTQNQAFNSLLFL 209

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203
           F+  +++E+  +     V R K+        ++E++       S      L    L   G
Sbjct: 210 FRHGLKREFGEL---RDVPRAKKSLYVPVVLSREEIDAILKHLSHPFS--LVVNLLFGCG 264

Query: 204 LRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMT-------------- 248
           LR  +  +  V+    +   +    K     TV LP+  +  L                 
Sbjct: 265 LRLFECLQLRVRDFNFDAVVLTVHGKGKKDRTVPLPEAILPELTAQIERVKALHEKDLAA 324

Query: 249 ----------------------------PIGKETFFINN---DKQKMNATQFSIWFKAKA 277
                                       P    T         +  ++ +          
Sbjct: 325 GYAGVFLDDAVEKKYPHAPKELIHQWFFPQQSLTLVEETGELRRYHLHESLLQEALYVAV 384

Query: 278 TKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            +A + K  +AH  R   AT    A      +    G  ++     YT 
Sbjct: 385 RRAKIPKRVTAHTFRHSYATHLLQANYDIRTIQTKLGHASLKTTMIYTH 433


>gi|295398101|ref|ZP_06808150.1| bacteriophage integrase [Aerococcus viridans ATCC 11563]
 gi|294973620|gb|EFG49398.1| bacteriophage integrase [Aerococcus viridans ATCC 11563]
          Length = 388

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 46/310 (14%), Positives = 101/310 (32%), Gaps = 48/310 (15%)

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIR 120
           ++ +    T + + +E+        +  ++    + YF   I+ + G     KI +  ++
Sbjct: 61  DTSKPIRQTFETVYNEWLDIYA-DDVESSTLNKTKQYFRLHILPQFGHILIDKINSSLLQ 119

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP------W 174
             ++  +    S  +F      +  +A  + Y+  NP   V  PK K +  +       +
Sbjct: 120 QTLKEWRLKYKSFKKFYNYTCRVLDYAHFKGYITENPKTKVIVPKAKVQYKQTKTTEDFY 179

Query: 175 TKEDMQQFKSFWSEGSQP------RLAFEFLLYSGLRCSDSCRAGVQHL----------- 217
           TK+++ QF  +  + S+          F  L + G+R  ++       +           
Sbjct: 180 TKDELNQFLQYAEQYSKDLDNGMWYTFFRMLAFVGIRRGEALALTWNDINFKEKTINIDK 239

Query: 218 -----QNNIFSIKTQKTGTIITV-ELPDGFMKLLAMTPIGKETFFI-------------- 257
                 NNI  I   K      +  L D  + +L    + +    +              
Sbjct: 240 ALKVGDNNIPYIGDTKNSNSDRILTLDDITVSILKRWKVQQARILLGFGYNVTAPNQLLF 299

Query: 258 -NNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKT 315
              D   ++ +      +    K      + HG R    ++  +AG    ++M   G   
Sbjct: 300 SKLDNTHLDVSSPRNRLERICKKNNFKMINIHGFRHTHCSLLFEAGVPMKDVMDRLGHSD 359

Query: 316 VDQAE-TYTK 324
           +      YT 
Sbjct: 360 IQTTMNIYTH 369


>gi|302345565|ref|YP_003813918.1| site-specific recombinase, phage integrase family [Prevotella
           melaninogenica ATCC 25845]
 gi|302148959|gb|ADK95221.1| site-specific recombinase, phage integrase family [Prevotella
           melaninogenica ATCC 25845]
          Length = 267

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 41/272 (15%), Positives = 96/272 (35%), Gaps = 24/272 (8%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           ++  +++      L+ N+  ++    +   RK   F+   +        +E  K  P + 
Sbjct: 1   MVKSFKQQLKKEELSDNTITAYLYAVEDFERKYSCFNRENLLLYKA-DQIEQFK--PKTV 57

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI--RPWTKEDMQQFKSFWSEGSQ 191
              + ++    ++  +       P L ++  K + +       +  D Q  KS   EG +
Sbjct: 58  NLRIQALNKYLEFIGK-------PRLRLKSLKIQQKTYLENVISNADYQYLKSKLKEGEE 110

Query: 192 PRLAFEFLLY---SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF----MKL 244
             + +  + +   +G R S+  +  V+H++   F I T K G +  + +P          
Sbjct: 111 E-VWYFLVRFLGATGARVSELIQFKVEHVRVGYFDIYT-KGGKVRRIFIPQDLCMETKAW 168

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAG 301
           L    I     F++   +++         +  A + G+N      H  R   A    ++ 
Sbjct: 169 LKRANIDLGYLFLDKHGKQITPRAIRHKLQRFAHQWGINSKVMHPHSFRHRYAKNFLESF 228

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
                L    G ++++    Y +     +  I
Sbjct: 229 NDVVLLADLMGHESIETTRIYLRRTSNEQQAI 260


>gi|47091895|ref|ZP_00229689.1| site-specific recombinase, phage integrase family, putative
           [Listeria monocytogenes str. 4b H7858]
 gi|47019611|gb|EAL10350.1| site-specific recombinase, phage integrase family, putative
           [Listeria monocytogenes str. 4b H7858]
          Length = 330

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 43/295 (14%), Positives = 95/295 (32%), Gaps = 29/295 (9%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESR-- 126
           T       Y+K      +  ++  +  S  ++ I+    +    +I  K I         
Sbjct: 29  TFLSFWEIYKKDMK-NRIRESTWETKISIVERKILPYFKNRKMSEIAPKDIIQWQNEMIS 87

Query: 127 -------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKED 178
                   ++P         +  +F  AVR   +  NP        K K+  +  WTKE+
Sbjct: 88  YRDKNGKAYSPVYLKTLHNQLSAMFNHAVRFYELKSNPARKAGNMGKEKSVEMLFWTKEE 147

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT--------- 229
            Q+F     + +    AFE L + G+R  +           N  ++   K+         
Sbjct: 148 YQKFSDSMMDKAISFYAFEILYWCGIRLGELLALTASDFDFNKGTLSISKSCQRLKGMDV 207

Query: 230 -------GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
                   +   +++P+   + +         +  +     +  +         A +  +
Sbjct: 208 ITEPKTPKSNRIIQMPEFLGEEIQEYIQSIYKWEPDERLFPITKSYLHSEMTRGAKEQKI 267

Query: 283 NK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
            +   H +R    ++  D+G +A  +    G +++D    Y       ++ I N 
Sbjct: 268 KRIRIHDLRHSHVSLLIDSGFSAVAIADRLGHESIDVTYRYAHLFPTKQMEIANM 322


>gi|94496736|ref|ZP_01303311.1| phage integrase [Sphingomonas sp. SKA58]
 gi|94423749|gb|EAT08775.1| phage integrase [Sphingomonas sp. SKA58]
          Length = 433

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/269 (13%), Positives = 81/269 (30%), Gaps = 31/269 (11%)

Query: 93  ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT-----------------PSSAIQ 135
                    I    G    R +T   I       K                   PS+A  
Sbjct: 134 KDESRIKTHIKPLLGKRIVRHLTPSDIEQMQSDVKEGKTAKPRGPGRGGRATGGPSAASG 193

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ------QFKSFWSEG 189
            + +++ +   A  +  +A +P    ++     +  R  +  +++       +     E 
Sbjct: 194 CVGTIQAIIGHAKHKGLLAKHPTEGAKKL-AGRKKTRRLSVIEIEMMGKAMAYAERNGEN 252

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAM 247
                A   LL +G R  +        +       +    K G  I   +    ++++  
Sbjct: 253 PVALGALRALLLTGYRREEGQAMQRAWVSTAGGYVAFPDTKGGAQIR-AIGPAAVRVIES 311

Query: 248 TP--IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATA 304
            P  +G    F +        T  S   +     A +   + H +R    +++ D G + 
Sbjct: 312 QPEIVGNPHTFPSELGSGAF-TAVSACLQRVCKLARIEGVTPHTLRHTFGSVAGDLGFSE 370

Query: 305 HELMATYGWKTVDQAETYTKGADRIRLGI 333
             + A  G  + +  + Y    + ++L +
Sbjct: 371 LTIRAMLGHASQNVTQDYIHIDEALKLAV 399


>gi|88797010|ref|ZP_01112600.1| tyrosine recombinase [Reinekea sp. MED297]
 gi|88779879|gb|EAR11064.1| tyrosine recombinase [Reinekea sp. MED297]
          Length = 317

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/245 (15%), Positives = 73/245 (29%), Gaps = 24/245 (9%)

Query: 103 IRKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCL 159
                D    +   + +    ++R   P   S+    L ++    K     E +A +   
Sbjct: 52  SEHDIDLALLEAYRRFLYKYRKARTAMPLALSTQRARLMAVTSFLKCLYYHEMIASDFYT 111

Query: 160 SVERPKRKTEGIRPWTK-EDMQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGV 214
               P+ +    +     E ++Q         + G + R   E    S  R ++     +
Sbjct: 112 KFRLPRVRKRLPKTIPDVEQIEQLIRQTMTKGAIGLRDRAILELFYASAPRRAELANLDI 171

Query: 215 QHLQ--NNIFSIKTQKTGTIITVEL-----------PDGFMKLLAMTPIGKETFFINNDK 261
           + +       +I   K      V +            D    L A    G E  F+    
Sbjct: 172 RDIDFKRGTVTIHKGKGDQDRVVPVGERALFWIKSYLDKLRPLHARLDSG-EALFLGTTG 230

Query: 262 QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
           +++  +  +        ++ V    S H +R  + T     GA   +L    G +     
Sbjct: 231 KRIRKSTLTDLVHEYILRSAVADKGSCHLLRHTTPTHMHRNGAELRDLQEFLGHEDPKTT 290

Query: 320 ETYTK 324
           E YT 
Sbjct: 291 EIYTH 295


>gi|258620568|ref|ZP_05715605.1| Integrase [Vibrio mimicus VM573]
 gi|258587083|gb|EEW11795.1| Integrase [Vibrio mimicus VM573]
          Length = 401

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 58/331 (17%), Positives = 109/331 (32%), Gaps = 39/331 (11%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87
           G    + L    ++ F         G  P  E          T++ L  ++ K      L
Sbjct: 54  GSYPELSLADARDAAFQQR-KLIKQGINPLAERQRRQWSGIETVEQLFDDWYK----NDL 108

Query: 88  AVNSRIS---FESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS--AIQFLTSMRV 142
            V  + +      Y  +I    G     ++T   +R  ++    +     A   L  M+ 
Sbjct: 109 QVRLQHANIPKRIYTKEIHPVMGKIRIDQVTALDVREVIKRVVDSGRKSIANDTLMYMKQ 168

Query: 143 LFKWAVRQEYVAINPCLSV---ERPKRKTEGIRPWTKEDMQQFKSFWSEG-----SQPRL 194
           LF+ A + +    NP  +    +    +    R  T++++      + E       +  L
Sbjct: 169 LFRHANKLDLTQFNPAAAFRINDAGGVEKSRERVLTEDEIATVFRVFRENNVSFTRENYL 228

Query: 195 AFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQ--KTGTIITVELPDGFMKLLAMTPI 250
           A    L  G+R S+ C+A      L N I+ +  +  K G  +T+ LP   ++ L    I
Sbjct: 229 ACCLYLVLGVRNSELCQAPWDEFDLDNGIWELPKERTKNGIPLTIPLPRQALEWLQELKI 288

Query: 251 ---GKETFFINNDKQK---MNATQFSIWFK----------AKATKAGVNK-SAHGVRKFS 293
                +  F +  + K   M +   +   K           K    GV+    H +R+  
Sbjct: 289 RALDSDYVFPSRRRSKNPYMGSDTITTAIKYLFGRDKERPTKNKMEGVDYFVVHDLRRTF 348

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324
            T+++  G            K       Y +
Sbjct: 349 RTLASAEGIDGQVAERCLNHKLKGVEGIYNR 379


>gi|29830523|ref|NP_825157.1| phage-related integrase [Streptomyces avermitilis MA-4680]
 gi|29607635|dbj|BAC71692.1| putative tyrosine-family recombinase/integrase [Streptomyces
           avermitilis MA-4680]
          Length = 438

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 70/384 (18%), Positives = 107/384 (27%), Gaps = 67/384 (17%)

Query: 14  ERTRHG-KIIYYFRK--GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
           +  R+G    Y  R     G      +P     +     A T +   R     PR    T
Sbjct: 24  KSDRYGSGARYRARYVGPDGTEKSKSFPDRQKRLADQWLAHTEADMARGQYIDPRAARVT 83

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH- 128
            +     +  +        N++ S ES          G          HIR  V      
Sbjct: 84  FQQYAETWVST---QGADPNTQASMESQLRLHAFPYLGSRPLGSFQPAHIRDWVRQLSEN 140

Query: 129 --TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQQFKSF 185
               S A    +++R     AV   +++ NPC +   RP    +     T E +   ++ 
Sbjct: 141 GIRGSYARTIYSNVRAALSAAVDDGHLSRNPCAARSVRPPTVDDRRVARTPERVFAVRAG 200

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQ-------------KTG 230
             E  + R   +     GLR  +     V     +++   +  Q             K G
Sbjct: 201 MPE--RFRAMVDLGGGCGLRQGEILGIAVDAIDFESDTLHVVQQLKLSRSKAVFAPPKGG 258

Query: 231 TIITVELP----DGFMKLLAMTP---------------IGKETFFINNDKQKMNATQFSI 271
            +  V LP    D     +   P               I K   F       +  T  + 
Sbjct: 259 KLRDVPLPGPVADALRAHMKRFPPVDITLPWKVADGPLITKRLIFTGPRGGHVWRTSLNE 318

Query: 272 -WFKAKATKAGV------NKS--------AHGVRKFSATISADAGATAHELMATYGWKTV 316
             +K     AGV       KS         H +R F A++  DAG     L    G    
Sbjct: 319 EAWKRALASAGVIPDRKPGKSYAESRENGMHALRHFYASVLLDAGENIKALAEYLGHSDP 378

Query: 317 D-QAETYTK----GADRIRLGIKN 335
                 Y        +R R  I  
Sbjct: 379 GLTLRVYAHLMPSSQERTRKAIAT 402


>gi|29377323|ref|NP_816477.1| phage integrase family site specific recombinase [Enterococcus
           faecalis V583]
 gi|29344789|gb|AAO82547.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis V583]
          Length = 393

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 53/324 (16%), Positives = 104/324 (32%), Gaps = 60/324 (18%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132
           WL  EY+K+    +     R   +     I+   G     ++T K ++  V         
Sbjct: 77  WL-DEYKKTVRESTFIATERRMKK----HILPTFGKMRLERLTVKIVQKSVNEWYKKNEM 131

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR-----KTEGIRPWTKEDMQQFKSFWS 187
               L+    +  +AV  E +  NP   + +P       K    + +TK++++ F +   
Sbjct: 132 GKVLLSYASRVCDYAVGLEIIDSNPFKKITKPSSLKKLEKNTKRKFYTKDELEHFLNTAD 191

Query: 188 EGSQPR---------------LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
             +                    F  L ++G+R  ++       +      +   KT  I
Sbjct: 192 SIANQAKEESLVLKYYADLDCAIFRLLSFTGIRVGEALALNWNDIDLKKQVVNINKTTAI 251

Query: 233 IT--VELPDG-----------------------FMKLLAMTPIGK---ETFFINNDKQKM 264
            T  + + D                          +  A+   G    +  F   D    
Sbjct: 252 STNGLTINDPKTPNSIRKISFDNKTAYILKKWKLRQHEALMKKGGFKTQLIFTKIDGTMS 311

Query: 265 NATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADA-GATAHELMATYGWKTVDQA-E 320
            +       K  A KA ++ S   HG R   AT+  ++    +  +    G  ++    +
Sbjct: 312 RSQDIYQRSKRLAEKANLH-SIGCHGFRHTHATLLFESDNVRSKIIQERLGHSSLQITMD 370

Query: 321 TYTKGADRIRLGIKNSRRISSVVD 344
           TYT  +D   +  + +   SS V+
Sbjct: 371 TYTHVSD--EVTKEATDAFSSYVN 392


>gi|325997549|gb|ADZ49757.1| XERCD family protein/integrase/recombinase [Helicobacter pylori
           2017]
          Length = 363

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 25/174 (14%), Positives = 63/174 (36%), Gaps = 15/174 (8%)

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIIT 234
           + + + +      ++ RL  + ++++G+R +++ +  ++    +N  ++I  +  G    
Sbjct: 186 DSIDKIEMSAKVRARNRLLIKIIVFTGMRSNEALQLKIKDFTLENGCYTILIKGKGDKYR 245

Query: 235 VELPDG------FMKLLAMT---PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284
             +           + L      P+  +  F N     +         +     AG+ + 
Sbjct: 246 AVMLKAFHIESLLKEWLTERELYPVKNDLLFCNQKGMALTQAYLYKQVERIINFAGLRRE 305

Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
              AH +R   AT+          +    G  +++ +  YT   D+ RL    S
Sbjct: 306 KNGAHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTH-FDKERLKEAAS 358


>gi|308176208|ref|YP_003915614.1| phage integrase family protein [Arthrobacter arilaitensis Re117]
 gi|307743671|emb|CBT74643.1| phage integrase family protein [Arthrobacter arilaitensis Re117]
          Length = 597

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 55/173 (31%), Gaps = 23/173 (13%)

Query: 178 DMQQFKSFWSEGSQPRLAFEFLL---YSGLRCSDSCRAGVQHLQ-----NNIFSIKTQKT 229
           D  +  +     S  R A + LL     GLR  +     +  +           I   K 
Sbjct: 296 DADRLLAQELLASDYRQAADALLLQRACGLRIGELLDLELDCVHEIPEAGTWLKIPLGKM 355

Query: 230 GTIITVELPDGFMKLLAMTPIGKET--------------FFINNDKQKMNATQFSIWFKA 275
            T   V L    + L+      +                F   +  +++  +   +    
Sbjct: 356 KTERMVPLDPDTLALVDRIIAERSPGQPLAHPRTGKPAQFLFTHHGRRLGESAVRLELNR 415

Query: 276 KATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
            A  AG+ K + H +R   AT   +AG T   LMA  G  + + +  Y    D
Sbjct: 416 AAQAAGLGKITPHQLRHTYATALINAGVTLQSLMALLGHVSAEMSLRYASLFD 468


>gi|300923585|ref|ZP_07139615.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 182-1]
 gi|300420168|gb|EFK03479.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 182-1]
          Length = 204

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 51/144 (35%), Gaps = 7/144 (4%)

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT--PI 250
           R A+       LR SD        ++ +   +  QKTG  + V L D   +++A      
Sbjct: 47  RDAWLLGYELMLRVSDLRSIRYDDIKGDHLVLSQQKTGESVRVRLTDTAKRIIAARREAN 106

Query: 251 GKETFFI-----NNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAH 305
               + +      +  + ++ ++          K G+N S H +RK   TI  D G    
Sbjct: 107 PDHVYLLQLDSHRSKGKPVSRSKLHEEISYAGEKLGLNLSTHSMRKSKPTIGYDNGEDIA 166

Query: 306 ELMATYGWKTVDQAETYTKGADRI 329
            +    G K++     Y     R 
Sbjct: 167 VISKALGHKSLSSTLHYIGATQRK 190


>gi|332141633|ref|YP_004427371.1| site-specific recombinase, phage integrase family protein
           [Alteromonas macleodii str. 'Deep ecotype']
 gi|332143441|ref|YP_004429179.1| site-specific recombinase, phage integrase family protein
           [Alteromonas macleodii str. 'Deep ecotype']
 gi|327551655|gb|AEA98373.1| site-specific recombinase, phage integrase family protein
           [Alteromonas macleodii str. 'Deep ecotype']
 gi|327553463|gb|AEB00182.1| site-specific recombinase, phage integrase family protein
           [Alteromonas macleodii str. 'Deep ecotype']
          Length = 415

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 62/352 (17%), Positives = 118/352 (33%), Gaps = 41/352 (11%)

Query: 8   PPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMS--ALTGSTPKREYINSPR 65
           P ++ +  T  G+     R+    +  L    ++    AY       G  P  E      
Sbjct: 36  PYWMIRYTTAKGR-----REATLGQFPLMSLADARIAAAYFRKEVRDGIDPLLEKQKIEL 90

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
               T+  L  ++ ++     L    +I +  Y   I    G     ++T + +R  +E 
Sbjct: 91  PDIETVDQLFHDWYRTDLSRRLKHP-KIPYRVYTKDISPVIGIKCIAEVTARDVREVLER 149

Query: 126 RKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV---ERPKRKTEGIRPWTKEDMQ 180
            +    P+ A   L  M+ LF+ A++ +    NP  +    +    ++   R  +KE++ 
Sbjct: 150 IRESNRPTIANDTLMYMKQLFRHAIKLDLTLNNPAAAFTVDDAGGVESSKDRMLSKEEIH 209

Query: 181 -QFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI----KTQKTGT 231
             F  F +     G    LA    L  G+R S+ C+A  + +           +  KTG 
Sbjct: 210 YAFSVFHTHINSFGRDNYLACCLFLVLGVRKSELCQAMWREMDLTTGVWDLPKERSKTGV 269

Query: 232 IITVELPDGFMKL---LAMTPIGKETFFINND---KQKMNATQFSIWF-KAKATKAGVNK 284
            I++ LP   +     L +   G    F       +  M     +    K    + G  K
Sbjct: 270 PISISLPRQAIAWFNELQIRACGSPYVFPARRASHRPHMGPDTLNRAISKLFGREPGRKK 329

Query: 285 ------------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
                       + H +R+   +++A  G   +        K       Y +
Sbjct: 330 QPLNKMGKLEYFTVHDLRRTFRSLAASLGIAGNVAERCLSHKLKGVEGIYDR 381


>gi|15923773|ref|NP_371307.1| integrase [Staphylococcus aureus subsp. aureus Mu50]
 gi|156979110|ref|YP_001441369.1| hypothetical protein SAHV_0779 [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|255005573|ref|ZP_05144174.2| hypothetical protein SauraM_03860 [Staphylococcus aureus subsp.
           aureus Mu50-omega]
 gi|14246552|dbj|BAB56945.1| integrase [Staphylococcus aureus subsp. aureus Mu50]
 gi|156721245|dbj|BAF77662.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3]
          Length = 368

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 42/288 (14%), Positives = 83/288 (28%), Gaps = 36/288 (12%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
              L+ EY           + +       + ++      D  K+TT+ +      +    
Sbjct: 69  FDKLVEEYIDWYSARRKTSSVKALKTHTNNHLLPYFKSMDVFKMTTQDVMKFQNKKLKEG 128

Query: 131 SSAIQFLTS---MRVLFKWAVRQEYVAINPCLSVERPKRKT-EGIRPWTKEDMQQFKSFW 186
            S          +  L   A++   +  N    V   + ++ + +  WT E   QF    
Sbjct: 129 HSGDYLKKMHVYLVSLLNHAMKFHELKQNVASLVGNFEIESQKRLNYWTLEQFNQFYEAL 188

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSI---------KTQKTGTII-T 234
           +   Q +L F+ L YSG R  +      + +   ++   I            KT + I  
Sbjct: 189 AT-QQQKLFFKLLFYSGARKGEIRALTWRDINFDDDFIHINKTDYHGEVTAPKTKSAIRD 247

Query: 235 VELP--------DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS- 285
           + LP        D  +          +        +  + +    WF             
Sbjct: 248 IYLPTHMMYDIKDYLIWYKENNIYKDDYVLFGTFYKAYSESTIDRWFTNALKVLDEQLPN 307

Query: 286 --------AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
                    H +R   A++  + GA+   +    G       E Y + 
Sbjct: 308 GQNFPRIVIHELRHSHASMLVNLGASVMIIAQRLGHSD--TTEVYNRY 353


>gi|315154177|gb|EFT98193.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0031]
          Length = 318

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 42/296 (14%), Positives = 106/296 (35%), Gaps = 32/296 (10%)

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
            ++   T     +E+  +   G++A  S   +    D I++       + +  +  ++ +
Sbjct: 5   SKQTERTFASYFAEWIATYKEGAIAEISVNKYYYALDFILQTIPSLKIKDLDRRAYQNVL 64

Query: 124 ESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPC-LSV--ERPKRKTEGIRPWTKED 178
                T    + + F   ++   +       +  +P   +V   RP  + +  +   KE+
Sbjct: 65  NEYAKTHERQTTMDFHHQVKSCIQDIFHDGLIERDPTYKAVIKGRPPVRKKKKKFLQKEE 124

Query: 179 MQQFKSFWSEGSQPRL-AFEFLLY-SGLRCSDSCRAGVQHLQNNIFSIKTQKTGT----- 231
           +++  S      +  +  F  ++  +GLR +++          +  +++  KT       
Sbjct: 125 LRKLISSLDLSPEISIDWFILIIAKTGLRYAEALALTPADFDWSARTLRVNKTWNYKSTQ 184

Query: 232 ---------------IITVELPDGFMKLLAMTPIGKETF---FINNDKQKMNATQFSIWF 273
                           I  ++   F  ++   P  +  F   F +   ++   + ++ + 
Sbjct: 185 GGFKSTKTTSSERTISIDFQIVGQFQLVIKDLPANEPIFVEKFEDGSYKRQFNSTYNHFL 244

Query: 274 KAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGAD 327
            ++    G+   S HG+R   A++   AG + H + A  G   +    ETY    D
Sbjct: 245 VSECKHLGITPISLHGLRHTHASVLLAAGVSIHSISARLGHANIGVTQETYAHVLD 300


>gi|282859069|ref|ZP_06268201.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
 gi|282588149|gb|EFB93322.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
          Length = 389

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 45/271 (16%), Positives = 97/271 (35%), Gaps = 29/271 (10%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQ------IIRKSGDFDYRKITTK---HIRSGVESR 126
            +Y K    G  A  + + + + +        I     D   +++T          + + 
Sbjct: 118 EDYEKQVEAGMKAKGTLLKYRTVYKHMQEFLDIRYHVKDIALKELTPAFISDFEMFLRTD 177

Query: 127 KHTPSSAIQFLTS-MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           KH  ++ +      +R +   A+  E++  +P    E  K +T      TK++++     
Sbjct: 178 KHCCTNTVWLYVCPLRTMVFIAINNEWLTRDPFREYEIKKEETT-RSFLTKDEIRLLMEG 236

Query: 186 WSEGSQPRLAFEFLLY---SGLRCSDSCRAGVQHLQN-----NIFSIKTQKTGTIITVEL 237
             + ++  L  +  L+   +GL  +D      ++++         +I  QKTG +  + L
Sbjct: 237 KLKNAKQELYRDLYLFCAFTGLSFADMRNLTEENIRTYFDEHEWININRQKTGVVSNIRL 296

Query: 238 PDGFMKLL--AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFS 293
            D   +++       G    F                 +A A + G+ K  + H  R  +
Sbjct: 297 LDIANRIIGKYRGLCGDGRIFPVPH-----YNTCLAGIRAVAKRCGITKHITWHQSRHTA 351

Query: 294 AT-ISADAGATAHELMATYGWKTVDQAETYT 323
           AT I    G     + +  G K++   + Y 
Sbjct: 352 ATTIFLSNGVPIETVSSMLGHKSIKTTQIYA 382


>gi|254516458|ref|ZP_05128517.1| phage integrase family protein [gamma proteobacterium NOR5-3]
 gi|219674881|gb|EED31248.1| phage integrase family protein [gamma proteobacterium NOR5-3]
          Length = 399

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/295 (11%), Positives = 85/295 (28%), Gaps = 33/295 (11%)

Query: 59  EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTK 117
           + I     K  T K    ++ +         +   + E      +I   G      I+ +
Sbjct: 74  KQIEQRSAKTPTFKAFADQWMEENR-IGWKPSYINTLEHSLSKHVIPTFGSVPMSAISKE 132

Query: 118 HIRSGVESRKHTPSS----------AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167
            I +        P                +  +R + + A  + +   NP   ++  K  
Sbjct: 133 DILAFRNQLARIPRKDGSVGLSAARINTVMVPLRQVMREASER-FGFDNPYQGIKLLKVP 191

Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI------ 221
              + P+T ++++       E   P        ++G+R  +      +++          
Sbjct: 192 RTKVEPFTLDEVKAVLDGVREDFHPY--MTVRFFTGMRTGEIHGLKWKYIDFKQRMILVR 249

Query: 222 -----FSIKTQKT-GTIITVELPDGFMKLLAMTPIGK---ETFFINNDKQKMNATQFSI- 271
                 ++   KT  +   + + D     L          +  F ++  + ++       
Sbjct: 250 ESYVAGAMTDTKTEESARDIPMSDEVYAALKEQHKRTGKLDLVFCSSSGEPLSINNVCKR 309

Query: 272 -WFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
            W+   A      +  +  R  +AT+   AG     +    G        + Y +
Sbjct: 310 VWYPLLALLKIPKRPPYQTRHTAATLWLAAGENPLWVAQMLGHSDSAITHKRYAR 364


>gi|206578539|ref|YP_002237615.1| site-specific recombinase, phage integrase family [Klebsiella
           pneumoniae 342]
 gi|206567597|gb|ACI09373.1| site-specific recombinase, phage integrase family [Klebsiella
           pneumoniae 342]
          Length = 338

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 48/296 (16%), Positives = 94/296 (31%), Gaps = 44/296 (14%)

Query: 71  LKWLISEYRKSA--HWGSLAVNSRISFESYFDQII--------RKSGDFDYRKITTKHIR 120
           L   I  +         +L+VN++ S+      ++        + +       ++   IR
Sbjct: 7   LSSWIRRFLLEYLIGERNLSVNTQKSYRDMLRLLLPFASEAAGKATDKLLVEDLSEGCIR 66

Query: 121 SGVESRKH----TPSSAIQFLTSMRVLFKW-AVRQ----EYVAINPCLSVERPKRKTEGI 171
           + +         + S+  Q L  +R L ++ A+      ++       S+   K  T  I
Sbjct: 67  NFLIRLGDERYCSASTRNQRLAGIRSLARFIAMHAPEYTDWYGR--LKSIPLRKSSTALI 124

Query: 172 RPWTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS---- 223
               K++M    S        G +      FL  +G R  +     +  L  NI +    
Sbjct: 125 SYLEKDEMDALLSAPDVDTAQGRRDHAVLLFLYNTGARADEVAHVKMGDLNMNIAAGHYN 184

Query: 224 ----IKTQKTGTIITVELPDGFMKLLAMTPIGK---ETFFINNDKQKMNATQFSIWFKAK 276
               +   K   +    L     +LL +    +   ET F+N   + +            
Sbjct: 185 NSSVVIHGKGNRLRRCPLWPETARLLQLLGRDRLSQETLFVNRQNRPLTRFGIRDVVVRN 244

Query: 277 ATKAGVNK--------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              A  +         S H +R  +AT    AG   + + A  G  ++     Y +
Sbjct: 245 VAVAAASVPSLSQKRVSPHTIRHTTATHLLRAGVDINTIRAWLGHVSLATTLIYAE 300


>gi|149882782|ref|YP_001294761.1| probable phage-family integrase [Microbacterium phage Min1]
 gi|148763413|gb|ABR10431.1| probable phage-family integrase [Microbacterium phage Min1]
          Length = 256

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/193 (17%), Positives = 56/193 (29%), Gaps = 4/193 (2%)

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199
           M   F W   +E+   NP   + + +       P T ED++          + R+     
Sbjct: 1   MYGFFTWMQEEEFRLDNPAARLPKVRVPKVEPDPVTTEDIELVL-HSGIYRRTRMWVLLY 59

Query: 200 LYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF-F 256
            Y G+R ++           +         K G  +   L     + L         F  
Sbjct: 60  AYQGMRAAEIAAVSGSSIDWKARRILSIEAKGGKEVWRPLHPVVWEQLQTWHTTGWLFPS 119

Query: 257 INNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTV 316
                + + A   S        +AGV    H +R + AT    AG     + A       
Sbjct: 120 PTRKGEHVTAANVSNVLSKAFKRAGVAHRPHQMRAWFATEMIAAGTPTIVVAAAMRHSDT 179

Query: 317 DQAETYTKGADRI 329
              E Y +  D  
Sbjct: 180 QSVEKYVRVRDDK 192


>gi|153213639|ref|ZP_01948912.1| Int [Vibrio cholerae 1587]
 gi|124115838|gb|EAY34658.1| Int [Vibrio cholerae 1587]
          Length = 345

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 49/329 (14%), Positives = 101/329 (30%), Gaps = 47/329 (14%)

Query: 24  YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAH 83
           Y +   G+R+R  +        AY + +      + ++ S       L  L+        
Sbjct: 19  YPQGREGKRVRKRF-ATKGEATAYENFIMREMDDKPWMGSKPDNRR-LSELLE------T 70

Query: 84  WGSLAVNS----RISFESYFDQIIRKSGDFDYRKITTKHIRSGV---------ESRKHTP 130
           W  +  ++    ++ +      I ++ GD      T+K   +           +++  +P
Sbjct: 71  WWQVHGHTIKSGKVVYRKTALTI-KELGDPIASTFTSKQYLAFRANRVSHFNKDNKSLSP 129

Query: 131 SSAIQFLTSMRVLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW--- 186
           +     L  +  +F   ++ +++   NP   +E  K     +    K D+Q F       
Sbjct: 130 TYQNFQLNLLSGMFSRLIKYKQWNLPNPLDDIEPIKVNQRALAYLDKADIQPFLQRLGGF 189

Query: 187 -SEG-----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
            SEG      +  L  +  L +G R S++       +     +    K   I +V + + 
Sbjct: 190 ESEGRSVSIPEIVLIAKICLATGARISEALSLERSQISEFKLTFVETKGKRIRSVPISEN 249

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA-----HGVRKFSAT 295
             K + +        F                      KA  +        H +R   AT
Sbjct: 250 LYKEIMLASSSSAKIFSTTYGSA----------HRYIKKALPDYVPEGQATHVLRHTFAT 299

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTK 324
                      L    G + ++Q   Y  
Sbjct: 300 HFMMNRGDILILQRILGHQKIEQTMAYAH 328


>gi|152977717|ref|YP_001343346.1| phage integrase family protein [Actinobacillus succinogenes 130Z]
 gi|150839440|gb|ABR73411.1| phage integrase family protein [Actinobacillus succinogenes 130Z]
          Length = 448

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/242 (15%), Positives = 83/242 (34%), Gaps = 17/242 (7%)

Query: 96  ESYFDQIIRKSGDFDYRKITTKHIRSGV------ESRKHTPSSAIQFLTSMRVLFKWAVR 149
             +          ++ + I+ + I + +        +  +PS+  ++ TS+  +   A +
Sbjct: 177 RRHAIYWRAVFSGWELKNISGEDINANLPTHSTTHKKALSPSTKNRYRTSILRVMSLAYK 236

Query: 150 QEYVAINPCLSVERPKRKTEGIRPW-TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD 208
             +V   P +       + +    W TK       +  +  +  +    F L +G R ++
Sbjct: 237 NGWVDRVPYV---PKYVEPKVRVRWITKAQAAALIANLNL-AWMKNVCSFALLTGARMTE 292

Query: 209 SCRAGVQHLQ-NNIFSIK---TQKTGTIITVELPDGFMKLLAMTPIGKET-FFINNDKQK 263
                   +  +   +I      K+G    + L    + LL      +   +  + D  K
Sbjct: 293 ILSLTWDKVDFDRSIAIVSNDVAKSGKARALPLNKIALDLLKNLKQNRRNEYVFHRDTDK 352

Query: 264 MNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
                    F     K+G++    H +R   A+    AG   + L    GW+T++  + Y
Sbjct: 353 RIGRIDWHDFHQALNKSGIDNFRFHDLRHTWASWHVQAGTPLYTLKEMGGWETLEMVKKY 412

Query: 323 TK 324
             
Sbjct: 413 AH 414


>gi|315181692|gb|ADT88605.1| Hypothetical bacteriophage integrase [Vibrio furnissii NCTC 11218]
          Length = 334

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 52/320 (16%), Positives = 105/320 (32%), Gaps = 34/320 (10%)

Query: 13  KERTRHGKIIYYFRKGHGRRIRLPYPHESTFIP-AYMSALTGSTPKREYINSPRKKPTTL 71
           + + R+GK    +R+            ++ F    Y   +  +   +E++  P     +L
Sbjct: 15  RPQGRNGK---RYRRQ----------FDTKFEATQYEKHVLATAHDKEWLEKP-ADRRSL 60

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
             LI  + K   +   +  +  ++      + ++ G     +IT K +     ++ +   
Sbjct: 61  SELIELWWK---YEGQSKKTAEAYLKEVKLVDKELGFPKAHQITHKLLADYRMAQLNKGR 117

Query: 132 SAIQFLTSMRVLFKW-----AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
           +   F   M  L        AV+ E+   +P    +    KT  +   + ++M    S  
Sbjct: 118 AMTTFNRKMNCLSNVFTALIAVK-EFHNPHPVSGFKLKVPKTREMAFLSVDEMNHLLSVL 176

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
           S  S      +  L +G R  ++       + +   +    K G   TV +       + 
Sbjct: 177 SGDSYK--VAKLCLATGARWGEAEELKGSTVSHCKVTFLDTKNGKDRTVPISQELQDEIV 234

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHE 306
               G+          K    +F +  K         ++AH +R   A+     G     
Sbjct: 235 TGKSGRLF--------KDCYAEFYVQLKQCNFDLPKGQAAHVLRHTFASHFMMNGGNILT 286

Query: 307 LMATYGWKTVDQAETYTKGA 326
           L    G  T+ Q  TY   A
Sbjct: 287 LQKILGHATIQQTMTYAHFA 306


>gi|301162340|emb|CBW21885.1| putative transposase [Bacteroides fragilis 638R]
          Length = 409

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 45/266 (16%), Positives = 87/266 (32%), Gaps = 35/266 (13%)

Query: 90  NSRISF---ESYFDQIIR---KSGDFDYRKITTKHIRSG----VESRKHTPSSAIQFLTS 139
            +   +     +  + I+      D   ++I+   I         + K   ++  +F+  
Sbjct: 129 ATYRKYEVTRRHLAEFIQSKYNVSDISIKEISPMFITDFELYLRTACKCGYNTTAKFMQF 188

Query: 140 MRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQQFKS---FWSEGSQPRLA 195
            + +   A     +  +P  S + R ++   G    T+++++               R  
Sbjct: 189 FKRIIIIARNNGILVGDPFASYKIRLEKVDRGY--LTEDEIKIILKKKMVSERLEHVRDL 246

Query: 196 FEFLLYSGLRCSDSCRAGVQHL-----QNNIFSIKTQKTGTIITVELPDG----FMKLLA 246
           F F  + GL  SD      +++      N     K  KT T + V L D       K   
Sbjct: 247 FVFSCFCGLAYSDVANLRQENIQKSFDGNLWIITKRVKTNTDVNVPLLDIPKMILKKYKG 306

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS-ADAGAT 303
             P GK    I+N K        + + K  A   G+ K  + H  R   AT +    G  
Sbjct: 307 KLPDGKILPVISNQK-------LNAYLKEIADICGIKKNLTFHLARHTFATTTTLSKGVP 359

Query: 304 AHELMATYGWKTVDQAETYTKGADRI 329
              +    G   ++  + Y +  +  
Sbjct: 360 IETVSKMLGHTNIETTQIYARITNSK 385


>gi|296314618|ref|ZP_06864559.1| prophage PSPPH01, site-specific recombinase, phage integrase family
           [Neisseria polysaccharea ATCC 43768]
 gi|296838618|gb|EFH22556.1| prophage PSPPH01, site-specific recombinase, phage integrase family
           [Neisseria polysaccharea ATCC 43768]
          Length = 404

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 46/297 (15%), Positives = 101/297 (34%), Gaps = 21/297 (7%)

Query: 53  GSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYR 112
           G   ++E          T + + +E+ K    G    ++   ++S    +    G     
Sbjct: 82  GEAKQQEKRERQAAVSNTFRSIAAEWHKHRETGLTGNHAARVWDSLEKDVFPMLGGLPVG 141

Query: 113 KITTKHIRSGVESRKHTPS--SAIQFLTSMRVLFKWAVRQEYVAINPCL-SVERPKRKTE 169
           +I    ++  +E+     +  +A + L  ++ +F +A+R E    NP +  V   K   +
Sbjct: 142 EIKVSQVKEVIEAVAARGALETAGRILQRIKAVFTYAIRTERAENNPAVPLVGLIKAPKQ 201

Query: 170 GIRP-WTKEDMQQFKSFWSEGSQPR---LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI- 224
             +P   + ++ +F          R   +A + ++ + +R  +   A       N     
Sbjct: 202 KHQPALPQSELTEFYRRLMLEQAERQTKIAMQLIMLTFVRNGELRAAEWVEFDLNGAEWS 261

Query: 225 ---KTQKTGTIITVELPDGFMKLLAMTP--IGKETFF---INNDKQKMNATQFSIWFKAK 276
                 K      V L D  ++LLA      G   +    + +  + M+    S      
Sbjct: 262 IPAAKMKMKAPHIVPLADWTLELLAELKEITGHSRYLFPSVKDPDKHMSENTLSYLMGRM 321

Query: 277 ATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKT---VDQAETYTKGADRIR 330
             K G+  + HG R  +  +  + G  +  +           V  A   T+   + +
Sbjct: 322 GYK-GI-ATPHGFRSLATDVLNENGFDSDMIERQLAHVEQNKVRAAYHRTEYIPQRK 376


>gi|294776190|ref|ZP_06741678.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
 gi|294449965|gb|EFG18477.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
          Length = 322

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 44/283 (15%), Positives = 96/283 (33%), Gaps = 35/283 (12%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQ--IIRKSGDFDYRKITTKHIRSGVESRKH- 128
           K LI   ++   +     ++   ++S  +   +  K+    + ++    ++      ++ 
Sbjct: 25  KQLIRSLKEEERF-----STAHIYQSTLNAFMLFCKTDAIRFNQMERSRLKQFENHLRNK 79

Query: 129 --TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI--RPWTKEDMQQFKS 184
             T ++   ++ ++R ++  AV        P           +    R    +DM +  S
Sbjct: 80  GCTWNTVSTYMRTLRSIYNKAVDDGLAEEKP-RLFRHVYTGVKANTKRALDAKDMSKLLS 138

Query: 185 FWSEGSQP------RLAFEFL-LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237
                  P      R     + L  G+   D        LQ+++ S +  KTG ++TVE+
Sbjct: 139 ASLPRPLPQSMKESRAWITLMFLLRGMPFVDLAHLRKTDLQDSVISYRRHKTGALLTVEI 198

Query: 238 PDGFMKLLAM---TPIGKETFFINNDKQKMNATQFSIWF----------KAKATKAGVNK 284
           P   M L+     T              + +  +++ +           K  A   G+  
Sbjct: 199 PPAAMNLIKRYQNTDSASPYLLPILSGNRKSEEEYAEYQHALRKLNYDLKQLAVYCGIKL 258

Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
             S++  R   AT++     +   +    G  +    ETY K 
Sbjct: 259 NVSSYTSRHTWATLAKYCHFSEQLICDALGHSSTKVTETYLKS 301


>gi|265766721|ref|ZP_06094550.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|263253098|gb|EEZ24574.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
          Length = 415

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 45/271 (16%), Positives = 97/271 (35%), Gaps = 29/271 (10%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQ------IIRKSGDFDYRKITTK---HIRSGVESR 126
            +Y K    G  A  + + + + +        I     D   +++T          + + 
Sbjct: 144 EDYEKQVEAGMKAKGTLLKYRTVYKHMQEFLDIRYHVKDIALKELTPAFISDFEMFLRTD 203

Query: 127 KHTPSSAIQFLTS-MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           KH  ++ +      +R +   A+  E++  +P    E  K +T      TK++++     
Sbjct: 204 KHCCTNTVWLYVCPLRTMVFIAINNEWLTRDPFREYEIKKEETT-RSFLTKDEIRLLMEG 262

Query: 186 WSEGSQPRLAFEFLLY---SGLRCSDSCRAGVQHLQN-----NIFSIKTQKTGTIITVEL 237
             + ++  L  +  L+   +GL  +D      ++++         +I  QKTG +  + L
Sbjct: 263 KLKNAKQELYRDLYLFCAFTGLSFADMRNLTEENIRTYFDEHEWININRQKTGVVSNIRL 322

Query: 238 PDGFMKLL--AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFS 293
            D   +++       G    F                 +A A + G+ K  + H  R  +
Sbjct: 323 LDIANRIIGKYRGLCGDGRIFPVPH-----YNTCLAGIRAVAKRCGITKHITWHQSRHTA 377

Query: 294 AT-ISADAGATAHELMATYGWKTVDQAETYT 323
           AT I    G     + +  G K++   + Y 
Sbjct: 378 ATTIFLSNGVPIETVSSMLGHKSIKTTQIYA 408


>gi|257085325|ref|ZP_05579686.1| phage integrase [Enterococcus faecalis Fly1]
 gi|256993355|gb|EEU80657.1| phage integrase [Enterococcus faecalis Fly1]
          Length = 400

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 64/394 (16%), Positives = 123/394 (31%), Gaps = 79/394 (20%)

Query: 17  RHGKIIY-YF----R-KGHGRRIRLPYPHESTFIPAYMSA--LTGSTPKREYINSPRKKP 68
           ++G+  + YF    R  G GR+ ++      +   A  +A  + G     E++     + 
Sbjct: 2   KNGQERWEYFVSNGRSNGTGRQQKIHKRGFRSHKEALKAAKIIEGQIASEEFVK-ENPQK 60

Query: 69  TTLKW----LISEYRKSAHWGSLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHIRSGV 123
            T+       I+EY+      ++   SRI +       I    G++   K      +  +
Sbjct: 61  MTISKFMNIWINEYKN-----NVKEGSRIVYRDAIRMYIDPYIGNYQLNKYKPADHQKFI 115

Query: 124 ESR-------KHTPSSAIQFLT----SMRVLFKWAVRQEYVAINPCLSVERP----KRKT 168
            S        K+    +   +     ++   FK A +  YV  NP   VE P    K KT
Sbjct: 116 NSLFTNKELGKNKNGLSYNTVKIVNAALSNAFKKAQKLGYVKSNPTYLVEFPLDKVKEKT 175

Query: 169 EGIRPWTKEDMQQ--FKSFWSEGSQPRLAFEFLLY---SGLRCSDSCRAGVQHLQ--NNI 221
              +      ++Q       +      + + F L     GLR  +       +    ++I
Sbjct: 176 NKEKKLEFYTLEQENLFLDTARNFDEYIWYVFFLIIFDLGLRKGEVMALRWFNFDFKDDI 235

Query: 222 FSI-------------------------KTQKTGTIITVELPDGFM-------KLLAMTP 249
            +                          ++ K    +   + + +         +L MT 
Sbjct: 236 LTFDKQRLYRKEQPGQVILDDVKTDAGKRSLKMTNRVRNSVLELYSINYDLTSNVLPMTN 295

Query: 250 IGKETFFINNDKQ----KMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATA 304
             ++  FIN+  +     +        +     KA + K   H  R  +A     AG   
Sbjct: 296 SNQDFLFINHRGKNVGLPIRQRSVDTAWHRIIQKANLPKIRIHDGRHTNAARLRQAGVPL 355

Query: 305 HELMATYGWKTVDQAETYTK-GADRIRLGIKNSR 337
            ++    G K V   E Y    A+     +    
Sbjct: 356 EDIKDMLGHKNVKTTEIYAHVSAEVKERAVNKLE 389


>gi|255692131|ref|ZP_05415806.1| integrase [Bacteroides finegoldii DSM 17565]
 gi|260622150|gb|EEX45021.1| integrase [Bacteroides finegoldii DSM 17565]
          Length = 409

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 45/266 (16%), Positives = 87/266 (32%), Gaps = 35/266 (13%)

Query: 90  NSRISF---ESYFDQIIR---KSGDFDYRKITTKHIRSG----VESRKHTPSSAIQFLTS 139
            +   +     +  + I+      D   ++I+   I         + K   ++  +F+  
Sbjct: 129 ATYRKYEVTRRHLAEFIQSKYNVSDISIKEISPMFITDFELYLRTACKCGYNTTAKFMQF 188

Query: 140 MRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQQFKS---FWSEGSQPRLA 195
            + +   A     +  +P  S + R ++   G    T+++++               R  
Sbjct: 189 FKRIIIIARNNGILVGDPFASYKIRLEKVDRGY--LTEDEIKIILKKKMVSERLEHVRDL 246

Query: 196 FEFLLYSGLRCSDSCRAGVQHL-----QNNIFSIKTQKTGTIITVELPDG----FMKLLA 246
           F F  + GL  SD      +++      N     K  KT T + V L D       K   
Sbjct: 247 FVFSCFCGLAYSDVANLRQENIQKSFDGNLWIITKRVKTNTDVNVPLLDIPKMILKKYKG 306

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS-ADAGAT 303
             P GK    I+N K        + + K  A   G+ K  + H  R   AT +    G  
Sbjct: 307 KLPDGKILPVISNQK-------LNAYLKEIADICGIKKNLTFHLARHTFATTTTLSKGVP 359

Query: 304 AHELMATYGWKTVDQAETYTKGADRI 329
              +    G   ++  + Y +  +  
Sbjct: 360 IETVSKMLGHTNIETTQIYARITNSK 385


>gi|302336436|ref|YP_003801643.1| integrase family protein [Olsenella uli DSM 7084]
 gi|301320276|gb|ADK68763.1| integrase family protein [Olsenella uli DSM 7084]
          Length = 268

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 46/131 (35%), Gaps = 8/131 (6%)

Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK----LLAMTPIGKETFFI 257
           +G R S+  +  V+H++   F I   K G +  + +P    +     L          F+
Sbjct: 124 TGARVSELIKLKVEHVEEGHFDIY-SKGGKLRRLYIPKKLREEALSWLRERGRKSGYLFV 182

Query: 258 NNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGATAHELMATYGWK 314
           N   + +     S   K  A K G+ +S    H  R   A    +       L    G +
Sbjct: 183 NRYGKTITPRGISQQLKKYARKYGIEESVVYPHSFRHLFAKNFLERYNDIALLADLMGHE 242

Query: 315 TVDQAETYTKG 325
           +++    Y + 
Sbjct: 243 SIETTRIYLRR 253


>gi|326791844|ref|YP_004309665.1| integrase family protein [Clostridium lentocellum DSM 5427]
 gi|326542608|gb|ADZ84467.1| integrase family protein [Clostridium lentocellum DSM 5427]
          Length = 320

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 39/289 (13%), Positives = 88/289 (30%), Gaps = 33/289 (11%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQII----RKSGDFDYRKITTKHIRS----GV 123
           K L+ +Y ++      +  +   +       +      + +        +H         
Sbjct: 19  KRLMQQYLRNCKADKKSEGTIREYGYDLRFFLCWNLLFNENMSVLDFKKRHFEEFKYFMA 78

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA----INPCLSVERP-KRKTEGIRPWTKED 178
           E RK + +     L ++R +  +A   +        NP   ++   K     +   ++E 
Sbjct: 79  EERKVSNARINHLLCAIRTMMGYAEDDDDEYEEYFRNPASRIKGLEKEPVRPVAFLSQEQ 138

Query: 179 MQQFKSFWSEGSQ-PRLAFEFLLY-SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
           +   +++  E      L    +LY SG R ++  +       +  +     K G    + 
Sbjct: 139 IDLLRNYLLEHKMYQHLCLLDILYDSGARVNEVLQVTDSDTTSKGYLKVKCKGGRYEYIL 198

Query: 237 LPDGFMKL--LAMTPIGKETFFINNDKQKMNATQFSIWFKA-KATKAGVNKS-----AHG 288
           L +   +   L ++   +  F+ +        +    W         G++ S      H 
Sbjct: 199 LHERSKESIQLHLSTKKEGAFWQSKYGPAETTSTLRGWVNDLYKILKGLDPSTPCFTPHS 258

Query: 289 VRKFSATISAD----------AGATAHELMATYGWKTVDQAETYTKGAD 327
            R        +             T  E+      K+VD  ++Y K  D
Sbjct: 259 FRHSVIENLGNGTHYLCEKLGRAFTIEEIQIIVHHKSVDMTKSYMKPKD 307


>gi|296113731|ref|YP_003627669.1| phage integrase [Moraxella catarrhalis RH4]
 gi|295921425|gb|ADG61776.1| phage integrase [Moraxella catarrhalis RH4]
          Length = 411

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 61/372 (16%), Positives = 113/372 (30%), Gaps = 47/372 (12%)

Query: 13  KERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           + +   GK  +    G G    +        +    + L     +   I +P     T K
Sbjct: 49  RYKDAKGKWRW---HGLGAYPAVTGAMARKLVQEKFADLALGLDELTAIPAP-PTAQTFK 104

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
            +  E+        L   ++  + S  +  I    G      I+ +   +     + TP+
Sbjct: 105 SVALEWYNEPSIQKLDDGTKSKYLSLLEKHIFPTMGKKAIGDISRQVWLTFFRKLQETPN 164

Query: 132 ---------SAIQFLTSMRVLFKWAVRQEY--VAINPCLSVERPKRKTEGIRPWTKEDM- 179
                    +A + L     ++++A+ QE   V  NP   +E    + E   P     + 
Sbjct: 165 PQTGKPIIETANRALQVCSRIYRFALTQELAGVEFNP---LEHLHERLEKHEPKQLAHVS 221

Query: 180 --QQFKSFWSEGSQP----RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI----KTQKT 229
                K      + P    RL  + L +  LR ++        +  N           K 
Sbjct: 222 EQDLHKLLLDIKTIPSEITRLGVQLLSHLFLRPNEVLDGEWVEIDFNKGIWEIPAHRMKK 281

Query: 230 GTIITVELPDGFMKLLAMTPI---GKETFFINNDKQKMNATQFSIWFKAKATKAGVN--K 284
                V L    + LL             F +  K + NA      F+    + G +  +
Sbjct: 282 RRPHVVPLSKQALALLQQLHSLTGFDTHLFPSRAKDRKNAH---QRFRMALNRLGYHDTQ 338

Query: 285 SAHGVRKFSATIS----ADAGA--TAHELMATYGWKTVDQAETYTKGA---DRIRLGIKN 335
           + HG R  ++T       + G       +      K    A  Y K     DR  +    
Sbjct: 339 TLHGFRHVASTKLNNYTDENGKKFDGRVIEFALAHKVQGVAGVYNKAEYLHDRKIINQWY 398

Query: 336 SRRISSVVDSDD 347
           S  +  +V ++D
Sbjct: 399 SDWLDGLVKAND 410


>gi|163854285|ref|YP_001642328.1| integrase family protein [Methylobacterium extorquens PA1]
 gi|163665890|gb|ABY33257.1| integrase family protein [Methylobacterium extorquens PA1]
          Length = 441

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 50/310 (16%), Positives = 99/310 (31%), Gaps = 39/310 (12%)

Query: 50  ALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF 109
           ALT      +     +    T+  L   +  + +    A N+   + + F  +   +   
Sbjct: 113 ALTAERELIQVAPVSQPALLTVDDLFERW-AAYNADKRARNTIKRYRASFRSLAAFARRR 171

Query: 110 DYRKITTKHIRSGVESRKH----TPSSAIQF-LTSMRVLFKWAVRQ---EYVAINPCLSV 161
           D R +    + +  E R+     +P +  +  L ++  + +WA  +     +  NP   +
Sbjct: 172 DARSLNADDLFAWAERRRDFEGVSPRAINKNDLVAVSSVLQWATGRSGGRILPDNPARGL 231

Query: 162 --ERPKRKTEGIRPWTKEDMQQFKSFWSE---------GSQPRLAFE-FLLYSGLRCSDS 209
             + P+   +  R + + ++       S           S  R        YSG R ++ 
Sbjct: 232 SLDEPRVVAQRERTFREHEITAILRAASAVVQEHDNITRSAARRWCPWLAAYSGARIAEL 291

Query: 210 CRAGVQHLQNN----IFSIKTQKTGTIITVELPDGFMK--LLAMTPIGKETFFINNDKQK 263
                Q ++ +    +  I+  KTG   TV L +  ++   L      +      + K+ 
Sbjct: 292 TSLVRQDVRIDGGAPVMDIRITKTGEPRTVPLHNHLIEQGFLRFVEASEVGPLFFDFKRH 351

Query: 264 ------MNATQFSIWFKAKATKAGVNKSA-----HGVRKFSATISADAGATAHELMATYG 312
                   A Q +        +A V         HG R    T +  AG       A  G
Sbjct: 352 KANAETSPAEQQAKAVAKW-VRATVKLDPGVDPNHGWRHTFKTRALGAGIEERLRDAITG 410

Query: 313 WKTVDQAETY 322
            +       Y
Sbjct: 411 HRVASVGRRY 420


>gi|77734437|emb|CAJ26220.1| integerase-recombinase [Thermotoga neapolitana]
 gi|77734439|emb|CAJ26226.1| integerase-recombinase [Thermotoga neapolitana]
 gi|77734447|emb|CAJ26230.1| integerase-recombinase [Thermotoga sp. SG1]
          Length = 190

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/197 (17%), Positives = 66/197 (33%), Gaps = 25/197 (12%)

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAI-----NPCLSVERPKRKTEGIRPWTKEDMQQ 181
           K+ P++    L  ++    W   +  +       N       P R T   +    +++++
Sbjct: 9   KNAPATQRNKLVVVKNYLNWRADRGLLNAEERFWNEAE----PPRHTVLPKAIELDEVRR 64

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN---IFSIKTQKTGTIITVELP 238
                      R  F+ L  +G+R S+     V  +  N      IK +     I + + 
Sbjct: 65  IIEACDNPLY-RAIFKVLANTGMRVSEIVNLSVHDISVNETARIRIKGKGNKERI-INVS 122

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATI 296
              ++ L         FF     +K +        K  A KAG+ K  + H  R   A  
Sbjct: 123 KELVEELM-----NSGFFE----KKPSVRSIQRAVKRYARKAGIKKKVTPHIFRHSFAVA 173

Query: 297 SADAGATAHELMATYGW 313
             + G   +++ A  G 
Sbjct: 174 LIERGVPLNKIQALLGH 190


>gi|326795207|ref|YP_004313027.1| integrase family protein [Marinomonas mediterranea MMB-1]
 gi|326545971|gb|ADZ91191.1| integrase family protein [Marinomonas mediterranea MMB-1]
          Length = 283

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/249 (13%), Positives = 82/249 (32%), Gaps = 18/249 (7%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHTPSSAIQFLTSMR 141
            L+  ++ ++     +  R   +    +I    I+  +      R  + SS  Q + ++ 
Sbjct: 16  GLSPLTQKAYLYQIGEASRYF-NLPPDRIRRADIQRYILHLIRDRGWSWSSCRQSVHALN 74

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201
            L++  + +  + +    ++  P ++          ++ +  S    G + + A      
Sbjct: 75  FLYQKVLSRNRLRV----ALPHPNKQQRIPDLLYPNEVHRMISACERG-KAKAAIMLAYA 129

Query: 202 SGLRCSDSCRAGVQHLQNN--IFSIKTQKTGTIITVELPD----GFMKLLAMTPIGKETF 255
           +G+R  +  R  V  L        I+  K      V  P+       +   +        
Sbjct: 130 TGMRAGEIVRLKVPDLDGKNSCIKIREGKGRRDRYVLFPEGLKVPLREYWRVFRPTDYVV 189

Query: 256 FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGW 313
           +  +  +K++ +      K  A +A ++K    H +R   A      G     L    G 
Sbjct: 190 YGLDKDRKIDTSTLRRGLKLAAQQAEIHKEVRFHSLRHAFACHQLLRGMPLPRLQILLGH 249

Query: 314 KTVDQAETY 322
           + +     Y
Sbjct: 250 QVIQTTFRY 258


>gi|297627411|ref|YP_003689174.1| Phage integrase:Phage integrase, N-terminal SAM-like
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
 gi|296923176|emb|CBL57769.1| Phage integrase:Phage integrase, N-terminal SAM-like
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
          Length = 313

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 48/250 (19%), Positives = 84/250 (33%), Gaps = 21/250 (8%)

Query: 108 DFDYRKITTKHIRSGVE---SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAIN-----PCL 159
           +   RK+T   +   V+   +R    S+  + L  +R   ++A R   +  +     P  
Sbjct: 53  EESLRKLTAAMLIEWVDLEAARGLKASTLGKQLVMLRSFLQYAHRSGRMGQDLSGVVPHA 112

Query: 160 SVERPKRKTEGIRPWTKEDM-QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218
           +  R     + +   T E +         +G + R     L   GLR  +     +  + 
Sbjct: 113 AAWRLSSIPDPVPAGTIEALFDTLDLRSPKGLRDRAILLLLTGLGLRACEIAGLRLDDIG 172

Query: 219 NNIFSIKTQKTGTIIT-VELPDGFMKLL-------AMTPIGKETFF--INNDKQKMNATQ 268
               S++ +  G  +  + LPD     L           +  E  F  + +  Q ++A  
Sbjct: 173 WRTGSLRIRGKGDRVDELPLPDEVGHALEDYVLHGRGGRVQGEEVFWTVIDPVQPLSANG 232

Query: 269 FSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
                +    KAGV K   H +R   AT     GAT  E+        +     Y K  D
Sbjct: 233 VCGTIRQICIKAGVEKFGPHRLRHTFATGMLATGATLQEVQGLLRHAHLRTTALYAK-VD 291

Query: 328 RIRLGIKNSR 337
           + RL      
Sbjct: 292 KNRLTALARE 301


>gi|229099135|ref|ZP_04230069.1| Site-specific recombinase, phage integrase [Bacillus cereus
           Rock3-29]
 gi|228684363|gb|EEL38307.1| Site-specific recombinase, phage integrase [Bacillus cereus
           Rock3-29]
          Length = 392

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 44/366 (12%), Positives = 109/366 (29%), Gaps = 44/366 (12%)

Query: 18  HGKIIYYFRKG-----HGRRIRLPYPHESTFIPAYMSALT-GSTPKREYINSPRKKPTTL 71
            G  ++ FR         RR +    ++     AY   L   ++     +   +    T+
Sbjct: 20  KGVKLWCFRHRYYDSLGKRREKYKQGYKLE-NEAYRDLLEVKTSILSGEVKQVKNSNLTI 78

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHIRSGVES---RK 127
              +  + ++       ++S    E+     ++   G +   ++     +    +   +K
Sbjct: 79  SEWLDIWYETHK-NEWKISSCSQRENAIKYQMKPLLGKYKLAELDKSTYKRVYINELLKK 137

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           + PS+   F    ++    AV  E +  N    +  P  +      +T E++ +F +   
Sbjct: 138 YKPSTVQLFHRLFKIAINAAVDDELIPRNRFNKITIPNEEKTVENFFTAEELNEFIAAAK 197

Query: 188 EGS--QPRLAFEFLLYSGLRCSDSCRAGVQHL------------QNNIFSIKTQKTGTII 233
           +            L ++GLR  ++     +++            ++N  +   +   +  
Sbjct: 198 KHENITNYSIILLLAFTGLRKGEALGLQWKNINFEEKTLTVERTRDNKGTRTPKTKNSFR 257

Query: 234 TVELPDGFMKLLAM---------------TPIGKETFFINNDKQKMNATQFSIWFKAKAT 278
           T+ + D  +  L                        F        +        F+    
Sbjct: 258 TILIDDTLINQLKAYRTWCKKTKLSFGLHLQDDDFIFISYQSGTPITDNPLMYSFQRILK 317

Query: 279 KAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
              + K + HG+R   AT+          +    G       + Y        L  ++  
Sbjct: 318 HTTLKKITPHGLRHTHATLLISQRIPVKVIADRLGNTPQMIFDIYGHS--FKELEEESVA 375

Query: 338 RISSVV 343
             S+ +
Sbjct: 376 AFSTSL 381


>gi|227497446|ref|ZP_03927678.1| phage integrase family protein [Actinomyces urogenitalis DSM 15434]
 gi|226833122|gb|EEH65505.1| phage integrase family protein [Actinomyces urogenitalis DSM 15434]
          Length = 390

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 46/264 (17%), Positives = 72/264 (27%), Gaps = 36/264 (13%)

Query: 89  VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAV 148
             +     +  D           R+    H         H  + A Q    +R +   AV
Sbjct: 106 PATGRLPRAVLDAWQAAGRPDPARRTPNVHT-------GHGRTQAAQAYRLLRTVLSRAV 158

Query: 149 RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD 208
               +  NP              +P T   +    +        R A     YSGLR  +
Sbjct: 159 EDGLIDRNPACLRGAATAPASERKPLTPAQVSALAAAMPP--HLRAAALLAAYSGLRPGE 216

Query: 209 SCRAGVQHLQ-------------------NNIFSIKTQKTGT-IITVELPDGFMKLLA-- 246
                 + +                        +    KT     TV +P    + LA  
Sbjct: 217 VFALRRRDIDLSDPTNPTVTVERTQTRTRAGQSAFGPPKTAAGRRTVAIPATVARALADH 276

Query: 247 ----MTPIGKETFFINNDKQKMNATQFS-IWFKAKATKAGVNKSAHGVRKFSATISADAG 301
                        F       ++A+  S     A+A     +   H +R   AT++A +G
Sbjct: 277 LAAYTAQGANALVFTTPAGGVVSASYRSRAMVTARAIIGRTDLRWHDLRHTGATLAAASG 336

Query: 302 ATAHELMATYGWKTVDQAETYTKG 325
           AT  EL A  G  +   A  Y   
Sbjct: 337 ATMAELQARIGHTSTQAAAIYQHA 360


>gi|225376719|ref|ZP_03753940.1| hypothetical protein ROSEINA2194_02361 [Roseburia inulinivorans DSM
           16841]
 gi|225211455|gb|EEG93809.1| hypothetical protein ROSEINA2194_02361 [Roseburia inulinivorans DSM
           16841]
          Length = 576

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/261 (14%), Positives = 76/261 (29%), Gaps = 24/261 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKI-----TTKHIRSGVESRKHTPSSAIQFLTS 139
              AV++ +         I          I       K    G+  R        + +  
Sbjct: 282 TGQAVSTIVRRFVCIRNFIELLEQEKILAIHATVAEVKKYADGLRERGIQAKGFNERIFG 341

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKT-EGIRPWTKED---MQQFKSFWSEGSQPRLA 195
           +   +K+   ++Y+   P   +E  ++K        + E+   M+  K  +    + R  
Sbjct: 342 IGHFYKFMEVKQYITRMPFR-IEYFQQKEVIVHHDRSVEETVYMEILKKLYLFPERLRCM 400

Query: 196 FEFLLYSGLRCSDSCRAG----VQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251
           F  L   GLR S+ C        Q  ++    +   K      + +P    +++ +    
Sbjct: 401 FLHLWCLGLRASEVCTLKGNAYYQQGEDYWIQVYQVKMKNYKRIPIPQALYQIMKVYLKK 460

Query: 252 KET-----FFINNDKQKMNATQFSIWFKAKATKAGVNK-----SAHGVRKFSATISADAG 301
            E       F N+         F         +  +        +H  R   AT+  D+ 
Sbjct: 461 HEIQPEEFIFKNSRGGACLYGTFRTQMIEACRENKIANGEYLFQSHDYRHTVATMFYDSH 520

Query: 302 ATAHELMATYGWKTVDQAETY 322
            +   +    G    +    Y
Sbjct: 521 VSLQSIRDYLGHTYEEMTRQY 541


>gi|154492977|ref|ZP_02032603.1| hypothetical protein PARMER_02619 [Parabacteroides merdae ATCC
           43184]
 gi|154087282|gb|EDN86327.1| hypothetical protein PARMER_02619 [Parabacteroides merdae ATCC
           43184]
          Length = 402

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 38/262 (14%), Positives = 96/262 (36%), Gaps = 23/262 (8%)

Query: 88  AVNSRISFESYF---DQIIRKSGDFDYRKITTKHIRSGVESRKHT---PSSAIQFLTSMR 141
            V +  ++++     ++     GD    ++ +  + +     K T   P+++  ++ ++R
Sbjct: 127 KVRTAGTYQNALNSFERFRGHRGDIPLDELDSNQMITYESWLKGTGVCPNTSSYYMRNLR 186

Query: 142 VLFKWAVRQEYV-AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLAFE 197
            ++  AV +  V   NP   V     KT+  R  +   +++ +            R  F 
Sbjct: 187 AIYNRAVSEGLVVQRNPFKHVYTGIDKTKK-RAVSLSVIRRIRDLDLNKKSLIFARDIFM 245

Query: 198 FLLYS-GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFF 256
           F  Y+ G+   D      + LQN I + + +KTG  + ++      +L+      + ++ 
Sbjct: 246 FSFYTRGMSFVDMAFLKKKDLQNGILTYRRKKTGQQLFIKWEKPMQELIDKYNTSETSYL 305

Query: 257 I-----------NNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAH 305
           +           +  + + +    ++ +  K    G+  + +  R   A+I+     +  
Sbjct: 306 LPIIQNNGVDEWHQYQNEAHRINRNLKYIGKQIGLGIPLTTYVARHAWASIAQSKNVSLP 365

Query: 306 ELMATYGWKTVDQAETYTKGAD 327
            +    G  +      Y    D
Sbjct: 366 VISEALGHDSEQTTRIYLASLD 387


>gi|153853990|ref|ZP_01995323.1| hypothetical protein DORLON_01314 [Dorea longicatena DSM 13814]
 gi|149753372|gb|EDM63303.1| hypothetical protein DORLON_01314 [Dorea longicatena DSM 13814]
          Length = 523

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/261 (14%), Positives = 76/261 (29%), Gaps = 24/261 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKI-----TTKHIRSGVESRKHTPSSAIQFLTS 139
              AV++ +         I          I       K    G+  R        + +  
Sbjct: 229 TGQAVSTIVRRFVCIRNFIELLEQEKILAIHATVAEVKKYADGLRERGIQAKGFNERIFG 288

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKT-EGIRPWTKED---MQQFKSFWSEGSQPRLA 195
           +   +K+   ++Y+   P   +E  ++K        + E+   M+  K  +    + R  
Sbjct: 289 IGHFYKFMEVKQYITRMPFR-IEYFQQKEVIVHHDRSVEETVYMEILKKLYLFPERLRCM 347

Query: 196 FEFLLYSGLRCSDSCRAG----VQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251
           F  L   GLR S+ C        Q  ++    +   K      + +P    +++ +    
Sbjct: 348 FLHLWCLGLRASEVCTLKGNAYYQQGEDYWIQVYQVKMKNYKRIPIPQALYQIMKVYLKK 407

Query: 252 KET-----FFINNDKQKMNATQFSIWFKAKATKAGVNK-----SAHGVRKFSATISADAG 301
            E       F N+         F         +  +        +H  R   AT+  D+ 
Sbjct: 408 HEIQPEEFIFKNSRGGACLYGTFRTQMIEACRENKIANGEYLFQSHDYRHTVATMFYDSH 467

Query: 302 ATAHELMATYGWKTVDQAETY 322
            +   +    G    +    Y
Sbjct: 468 VSLQSIRDYLGHTYEEMTRQY 488


>gi|225021491|ref|ZP_03710683.1| hypothetical protein CORMATOL_01511 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224945873|gb|EEG27082.1| hypothetical protein CORMATOL_01511 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 382

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 57/351 (16%), Positives = 107/351 (30%), Gaps = 56/351 (15%)

Query: 14  ERTRHGKIIY--YFRKGHGRRIRLPYPHESTF-IPAYMSALTGSTPKREYINS---PRKK 67
           +R R+  I +   +R   G+       H  TF       A      +         P+  
Sbjct: 4   KRVRNTGISWQGRYRDASGKE------HSKTFRTKREAKAWEDDQIRAVRRGEWLDPQTS 57

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR- 126
             T+  L+ +        S   N+R +       +           +    +RS +    
Sbjct: 58  TITVHDLVKKKLS----QSAKPNTRQARNYLLANLGD-LSPIPITALRPAMVRSWLHVLE 112

Query: 127 -------KHTPSSAIQFLTS---MRVLFKWAVRQEYVAINPCLSV---ERPKRKTEGIRP 173
                    +P +A         +R +   AV  + +  +P   V      K+      P
Sbjct: 113 TGRPWVPNRSPLAANTISMIAGQLRAILTQAVNDDVILRHPMRGVVISSASKQVERDDIP 172

Query: 174 WTKEDMQQFKSFWSEG----SQPRLAFEFLLY--SGLRCSDSCRAGVQHLQ--NNIFSIK 225
            T+E     ++ +S G      P+LA   ++   +GLR  +     V+ +        + 
Sbjct: 173 DTEEIQALIQAAYSSGRGVSPNPQLARMIIVAATTGLRGGEIGGLRVKDVDFFRRELHVS 232

Query: 226 TQ------------KTGTIITVELPDG----FMKLLAMTPIGKE-TFFINNDKQKMNATQ 268
            Q                  TV L +         L   P G+E T F     +  N+  
Sbjct: 233 QQVSQNNAGPTAPKSRRASRTVPLTEETLAALNTQLRERPRGREETIFAAKSGEPYNSLA 292

Query: 269 FSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
               FK    + GV  + H +R + A+   ++G +   +    G  +    
Sbjct: 293 IGTQFKNLTKRVGVTTTFHALRHYYASKLIESGVSVSVVQRVLGHSSPATT 343


>gi|116749855|ref|YP_846542.1| phage integrase family protein [Syntrophobacter fumaroxidans MPOB]
 gi|116698919|gb|ABK18107.1| phage integrase family protein [Syntrophobacter fumaroxidans MPOB]
          Length = 414

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 51/318 (16%), Positives = 87/318 (27%), Gaps = 19/318 (5%)

Query: 26  RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISE-YRKSAHW 84
           R    +R R      +T       A      ++  + +  +   TL    +E Y  +A  
Sbjct: 68  RLIELKRNRREGTGPTTLREQRAEAKAKRKAEQAALKAKAQAEKTLSEYWTETYFPTAQR 127

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTK---HIRSGVESRKHTPSSAIQFLTSMR 141
                +     + +   I    G    + I  K    +   + +   +  +      ++R
Sbjct: 128 SKKESSWSKEKQHFTRWIAPLLGKMPLKSIGLKQWDELVKVLSTAGLSQRTKEYITGTLR 187

Query: 142 VLFKWAVRQEYVAINPCLS----VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE 197
            + K A  +  V+  P       V  P           KE+                   
Sbjct: 188 RILKHAYDRRMVSDPPPTGKRIGVAGPGNNRRLRVVSHKEEAAILAELARRDVHAWRITR 247

Query: 198 FLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG--KE 253
           F   +G R S++       +            K     T+ + +   +LL     G    
Sbjct: 248 FAFLTGCRASEAFNLTWGSIDHARGCIVFADTKNRDSRTIPITEPLTELLDTMTAGPANA 307

Query: 254 TFFINNDKQKM--NATQFSIWFKAKATKAGVNKS----AHGVRKFSATISADAGATAHEL 307
             F+  D          F           G  K      H +R   AT  A       +L
Sbjct: 308 PVFVKEDGSVYQQAPYPFQSVVDDLGLNEGRGKRDRLVFHSIRHSVATRLAQRLGP-RDL 366

Query: 308 MATYGWKTVDQAETYTKG 325
           M   GW+TV  A  Y  G
Sbjct: 367 MDVMGWRTVQMAMRYVHG 384


>gi|12642604|gb|AAK00305.1|AF314190_1 integrase IntI7 [uncultured bacterium PG11]
          Length = 303

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 42/297 (14%), Positives = 92/297 (30%), Gaps = 62/297 (20%)

Query: 83  HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----SRKHTPSSAIQFLT 138
               L++ +  S+ ++  + I         ++  +H+ + +      R  + S+  Q L+
Sbjct: 13  RTRHLSIRTEESYLAWIKRYILFHRKRHPSELGAQHLSAFLSHPAVKRHVSASTQNQSLS 72

Query: 139 SMRVLFK--WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196
           ++  L++    V  +++       V R +R       +T+ ++    +   + +   L  
Sbjct: 73  AILFLYREVLGVELDWIT-----DVARAQRPKRLPVAFTRAEVNAVLARLRDTTW--LMA 125

Query: 197 EFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGT----IITVELPDGFMKLLAMTPI 250
             L  SGLR  +  R  V+ +   N+   ++  K       ++   + +   + L     
Sbjct: 126 SLLYGSGLRLMECVRLRVKDVDFGNHQIIVRDGKGAKDRVTMLPAPVEESLKRHLTRVKA 185

Query: 251 GKE------------------------------TFFINNDKQKMNATQ-----------F 269
             E                                F  + + +   +             
Sbjct: 186 LHEQDVRDGFGGVYLPFALERKYKHAEREWMWQYVFPASRRSRDPRSGREQRHHVAETVL 245

Query: 270 SIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
               KA   +AG+ K  S H  R   AT    AG     +    G   +     YT 
Sbjct: 246 QRAVKAAVRQAGIEKPGSCHTFRHSFATHLLGAGYDIRTIQELMGHSDLHTTMIYTH 302


>gi|225351903|ref|ZP_03742926.1| hypothetical protein BIFPSEUDO_03507 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157150|gb|EEG70489.1| hypothetical protein BIFPSEUDO_03507 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 358

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 51/288 (17%), Positives = 90/288 (31%), Gaps = 39/288 (13%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVES--- 125
           T +     Y K      L +N+ ++ ES    +I+   G     +IT K +     +   
Sbjct: 57  TFESFAQLYEKDMK-PKLKLNTWLTKESIIQKKILPYFGKRKLSEITAKDVMDWQNAIRE 115

Query: 126 ---RKHTPSSAIQFLTS---MRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKED 178
               K  P S     T    +  LF  AVR   + +NP          +   +  WTK++
Sbjct: 116 LTDAKGKPYSPTYLKTVHNQLSALFNHAVRYYGLQVNPAAKAGNMGVEERREMLFWTKDE 175

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK---------- 228
             +F     +      AFE L + G+R  +              ++   K          
Sbjct: 176 YLKFADAMMDKPLSYYAFEMLYWCGIREGELLALTPTDFDFEAGTVSISKSYQRLKGKDV 235

Query: 229 ------TGTIITVELPDGFMK-----LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKA 277
                   +   +++P          L      G      +  K  ++           A
Sbjct: 236 ITTPKTKKSNRVIKMPKFLCGEMEDYLKMFYSTGANERIFSVSKHYLHHE-----MDRGA 290

Query: 278 TKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             AGV +   H +R    ++  D G TA  +    G +++D    Y  
Sbjct: 291 KAAGVKRIRIHDLRHSHISLLIDMGFTALAIADRVGHESIDITYRYAH 338


>gi|325204552|gb|ADZ00006.1| Prophage CP4-57 integrase [Neisseria meningitidis M01-240355]
          Length = 363

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 45/297 (15%), Positives = 101/297 (34%), Gaps = 21/297 (7%)

Query: 53  GSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYR 112
           G   ++E          T + + +E+ K    G    ++   ++S    +    G     
Sbjct: 57  GEAKQQEKRERQAAVSNTFRSIAAEWHKHRETGLTGNHAARVWDSLKKDVFPMLGGLPVS 116

Query: 113 KITTKHIRSGVESRKHTPS--SAIQFLTSMRVLFKWAVRQEYVAINPCL-SVERPKRKTE 169
           +I    ++  +E+     +  +A + L  ++ +F +A++ E    NP +  V   K   +
Sbjct: 117 EIKVSQVKEVIEAVAARGALETAGRILQRIKAVFTYAIQTERAENNPAVPLVGLIKAPKQ 176

Query: 170 GIRP-WTKEDMQQFKSFWSEGSQPR---LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI- 224
             +P   + ++ +F          R   +A + ++ + +R  +   A       N     
Sbjct: 177 KHQPALPQSELTEFYRRLMLEQAERQTKIAMQLIMLTFVRNGELRAAEWVEFDLNGAEWS 236

Query: 225 ---KTQKTGTIITVELPDGFMKLLAMTP--IGKETFF---INNDKQKMNATQFSIWFKAK 276
                 K      V L D  ++LLA      G   +    + +  + M+    S      
Sbjct: 237 IPAAKMKMKAPHIVPLADWTLELLAELKEITGHSRYLFPSVKDPDKHMSENILSYLMGRM 296

Query: 277 ATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKT---VDQAETYTKGADRIR 330
             K G+  + HG R  +  +  + G  +  +           V  A   T+   + +
Sbjct: 297 GYK-GI-ATPHGFRSLATDVLNENGFDSDVIERQLAHVEQNKVRAAYHRTEYIPQRK 351


>gi|256786047|ref|ZP_05524478.1| phage-related integrase [Streptomyces lividans TK24]
 gi|289769944|ref|ZP_06529322.1| integrase [Streptomyces lividans TK24]
 gi|289700143|gb|EFD67572.1| integrase [Streptomyces lividans TK24]
          Length = 419

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 59/379 (15%), Positives = 103/379 (27%), Gaps = 71/379 (18%)

Query: 12  TKERTR-------HG-KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63
            K RTR       HG    +  R       +      +       +A      +      
Sbjct: 20  HKSRTRRMVPTSDHGIGKRWQVRYRDLEGHQRKENFHTRAEADKRAAEVDVEIRSGSYVV 79

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSG 122
           P +   TL     ++       S+   + + +E+   + I+   G  + R +    +  G
Sbjct: 80  PAETKQTLGAYAQKWL---DANSVGPTTALRYEATVRNHIVAHLGRRELRSLNRPSVVQG 136

Query: 123 VESRKHTPSSAIQFLTSM----RVLFKWAVRQEYVAINPCLS--VERPKRKTEGIRPWTK 176
                      +  +  +      +   AV    +  NPC S  V+ P    + I PW+ 
Sbjct: 137 WIRTLQDGGFEVSTIEGIFDIFSSILGMAVEDGLLPKNPCKSKSVKLPTATKKKIVPWSL 196

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ------- 227
           E ++   +   E  Q     +     GLR  +     V+ +        +  Q       
Sbjct: 197 ERVRAVINGLPERFQAGG--KLAFGCGLRQGEIFGFAVEDIDFRGGWIHVNRQVRLVGTK 254

Query: 228 ------KTGTIITVELPDGFMKLLAM-------------------TPIGKETFFINNDKQ 262
                 K   I +V L       L                      P      F++   +
Sbjct: 255 PVFALPKGNRIRSVPLSAQLAAALKAHIRRFPPTAVTLPWAKPDGEPKTFRLLFVDEKGR 314

Query: 263 KMNATQF--SIWFKAKATK--------------AGVNKSAHGVRKFSATISADAGATAHE 306
             N + F    W +A                  A      H +R   A++  DAG +   
Sbjct: 315 AYNRSVFNMGAWKRALVAADVIPPRKRGARYLQAAPEDGMHALRHAYASVLLDAGESIKA 374

Query: 307 LMATYGWKTVD-QAETYTK 324
           L    G         TYT 
Sbjct: 375 LSEYLGHSDPGFTLRTYTH 393


>gi|218283647|ref|ZP_03489609.1| hypothetical protein EUBIFOR_02203 [Eubacterium biforme DSM 3989]
 gi|218215707|gb|EEC89245.1| hypothetical protein EUBIFOR_02203 [Eubacterium biforme DSM 3989]
          Length = 373

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 48/308 (15%), Positives = 97/308 (31%), Gaps = 46/308 (14%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
                  YR      +++       +S ++   ++  +      T K I     S K   
Sbjct: 60  FGQFFEIYRNDYKRRNVSD---YDIQSRYNTYFKQFENKKLINFTKKDIEKVALSMKENG 116

Query: 131 SSA---IQFLTSMRVLFKWAVRQEYVAINPCLSVERPK-----RKTEGIRPWTKEDMQQ- 181
            S        T  + +  +AV++ Y+ +NP    E+ K     +  + ++ WT  ++Q  
Sbjct: 117 CSISYINYMTTYFKSIMNFAVKEGYIPVNPFNGYEKIKEVKTSKNDKFLQYWTDSEIQTA 176

Query: 182 -------FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGV-------------QHLQNNI 221
                  F S  ++  Q R    F  ++G+R  +                   +H+    
Sbjct: 177 IQSIPKCFDSTKTDIIQIRHLILFAFFTGMRYGEIRGLKWCDINFEKRLIYIDRHINKKN 236

Query: 222 FSIKTQKTGTIITVELPDGFMKLLAMTPIGKET----------FFINNDK--QKMNATQF 269
             +  +K G   T+ + D  M +L       ET          F          +  +  
Sbjct: 237 VILDGRKNGDYHTLYIDDNTMDVLTEIKARYETKKEFNNKCYVFHSATRGLNYPLTTSTG 296

Query: 270 SIWFKAKATKAGVNK-SAHGVRKFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGAD 327
           + + KA A    +     HG+R   A+   +  G   +E+    G         Y +  +
Sbjct: 297 NKYMKALAEYNHLPHIKFHGLRHSCASYLISVVGLNVYEVADRLGDTVKVTMSVYAELFN 356

Query: 328 RIRLGIKN 335
             +     
Sbjct: 357 ETKKNAAT 364


>gi|148544372|ref|YP_001271742.1| phage integrase family protein [Lactobacillus reuteri DSM 20016]
 gi|184153736|ref|YP_001842077.1| phage integrase [Lactobacillus reuteri JCM 1112]
 gi|227363204|ref|ZP_03847337.1| phage integrase family protein [Lactobacillus reuteri MM2-3]
 gi|325681623|ref|ZP_08161144.1| phage integrase family site-specific recombinase [Lactobacillus
           reuteri MM4-1A]
 gi|325682692|ref|ZP_08162208.1| phage integrase family site-specific recombinase [Lactobacillus
           reuteri MM4-1A]
 gi|148531406|gb|ABQ83405.1| phage integrase family protein [Lactobacillus reuteri DSM 20016]
 gi|183225080|dbj|BAG25597.1| phage integrase [Lactobacillus reuteri JCM 1112]
 gi|227071744|gb|EEI10034.1| phage integrase family protein [Lactobacillus reuteri MM2-3]
 gi|324977042|gb|EGC13993.1| phage integrase family site-specific recombinase [Lactobacillus
           reuteri MM4-1A]
 gi|324979088|gb|EGC16034.1| phage integrase family site-specific recombinase [Lactobacillus
           reuteri MM4-1A]
          Length = 376

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 47/300 (15%), Positives = 101/300 (33%), Gaps = 41/300 (13%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK------ITTKHIRSGV 123
           TLK L+ EY K      +  ++  S ++  + ++   G+    +      IT K      
Sbjct: 67  TLKQLLGEYTKYEK-PRIRRSTYYSHQTMVNTLLDIFGNDALVEKFTPLIITEKLESLMY 125

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE-----GIRPWTKED 178
             R+ +     ++   +  LF +AV+  Y   NP  +V+   +          +    ++
Sbjct: 126 GDRELSSGYVSRYKYYLHKLFDYAVKHSYTKDNPVDNVKIDYKAPANGQQIKDKFLEADE 185

Query: 179 MQQFKSFWSEGSQPRLAF-EFLLYSGLRCSDSCRAGVQHLQNN---------------IF 222
           ++    +    ++      E+L  +GLR  ++       +                    
Sbjct: 186 LKAVLKYLYNNTRIYGELCEWLYLTGLRFGEAAALSFDDVYQKDNHWFVDITGTLEYKRI 245

Query: 223 SIKTQKTG-------TIITVELPDGFMKL---LAMTPIGKETFFINNDKQKMNATQFSIW 272
            IK QK         ++ +V LP   +++   L     GK   F   +   +     +  
Sbjct: 246 KIKEQKKSDAPKTSSSVRSVVLPKKAVQIYLDLKKKSNGKGFIFATENGTPIQTASVNTV 305

Query: 273 FKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADRI 329
            ++   K  +NK  S H  R    +  A+ G   + +    G  +    ++ Y     + 
Sbjct: 306 LRSAKKKLKLNKPLSTHVFRHTHISKMAELGIPLYVIQQRVGHSSSKITSQIYLHVTQKA 365


>gi|20090544|ref|NP_616619.1| phage integrase [Methanosarcina acetivorans C2A]
 gi|19915573|gb|AAM05099.1| phage integrase [Methanosarcina acetivorans C2A]
          Length = 373

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 47/263 (17%), Positives = 84/263 (31%), Gaps = 42/263 (15%)

Query: 97  SYFDQIIRKSGD----------FDYRKITTKHI--RSGVESRKHTPSSAIQFLTSMRVLF 144
            +F +   K G           FDY     KH   + GVE +    + A   +  +R   
Sbjct: 32  KHFIEWCDKEGKLLESFSEDDVFDYLDELEKHTFKQKGVEKKYSEFTKARNRIQ-VRKFL 90

Query: 145 KWAVRQEYVAINP----CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200
            +        +NP       + +PK        +TKE+++       +  +         
Sbjct: 91  SF--------VNPYLKTTFKIRKPKNNKLPEDIFTKEEVEAMIDTC-QNPRDSAIVATFY 141

Query: 201 YSGLRCSDSCRAGVQHLQ----NNIFSIKTQKTGTII--TVELPDGFMKLLAMTP----I 250
            SG R  +     ++++       + +I   KTG+     V       + L   P     
Sbjct: 142 ESGARKGELLAVRIRNIVFDEFGVVVNITEGKTGSRRIRLVFAASYLRQWLDCHPLKDNR 201

Query: 251 GKETFF-INNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAGATAHE 306
               F  + +   K++ T      K    +AG+       H  R   AT  ++   T  +
Sbjct: 202 DAFVFCSLRSPFGKLSNTGIHDQLKEIGKRAGIPVEKLHPHNFRHTRATHLSEH-LTEAQ 260

Query: 307 LMATYGWK-TVDQAETYTKGADR 328
           L    GW  +      YT  + R
Sbjct: 261 LKEYMGWTKSSTMTSIYTHLSGR 283


>gi|17975106|ref|NP_536628.1| Int [Vibrio phage K139]
 gi|153820858|ref|ZP_01973525.1| Int [Vibrio cholerae B33]
 gi|165970235|ref|YP_001650866.1| putative integrase [Vibrio phage kappa]
 gi|229512070|ref|ZP_04401549.1| integrase [Vibrio cholerae B33]
 gi|229519206|ref|ZP_04408649.1| integrase [Vibrio cholerae RC9]
 gi|229607239|ref|YP_002877887.1| integrase [Vibrio cholerae MJ-1236]
 gi|254849315|ref|ZP_05238665.1| conserved hypothetical protein [Vibrio cholerae MO10]
 gi|4530503|gb|AAD22068.1| Int [Vibrio phage K139]
 gi|126521650|gb|EAZ78873.1| Int [Vibrio cholerae B33]
 gi|165292212|dbj|BAF98794.1| putative integrase [Vibrio phage kappa]
 gi|229343895|gb|EEO08870.1| integrase [Vibrio cholerae RC9]
 gi|229352035|gb|EEO16976.1| integrase [Vibrio cholerae B33]
 gi|229369894|gb|ACQ60317.1| integrase [Vibrio cholerae MJ-1236]
 gi|254845020|gb|EET23434.1| conserved hypothetical protein [Vibrio cholerae MO10]
          Length = 345

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 48/329 (14%), Positives = 96/329 (29%), Gaps = 47/329 (14%)

Query: 24  YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAH 83
           Y +   G+R+R  +        AY + +      + ++ S       L  L+        
Sbjct: 19  YPQGREGKRVRKRF-ATKGEATAYENFIMREVDDKPWMGSKPDNRR-LSELLE------T 70

Query: 84  WGSLAVNS----RISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---------KHTP 130
           W  +  ++    ++ +      I ++ GD      T+K   +   SR           +P
Sbjct: 71  WWQVHGHTIKSGKVVYRKTALTI-KELGDPIASTFTSKQYLAFRASRVSHFNKENKSLSP 129

Query: 131 SSAIQFLTSMRVLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
           +     L  +  +F   ++ +++   NP   +E  K     +    K D+Q F       
Sbjct: 130 TYQNFQLNLLSGMFSRLIKYKQWNLPNPLDDIEPIKVNQRALAYLDKADIQPFLQRLGGF 189

Query: 190 SQPR---------LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
                        L  +  L +G R S++       +     +    K   I +V + + 
Sbjct: 190 ESDGRSVSIPEIVLIAKICLATGARISEALSLERSQISEFKLTFVETKGKRIRSVPISEN 249

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA-----HGVRKFSAT 295
             K + +        F                      KA  +        H +R   AT
Sbjct: 250 LYKEIMLASSSSTKIFSTTYGSA----------HRYIKKALPDYVPEGQATHVLRHTFAT 299

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTK 324
                      L    G + ++Q   Y  
Sbjct: 300 HFMMNRGDILILQRILGHQKIEQTMAYAH 328


>gi|307243898|ref|ZP_07526023.1| site-specific recombinase, phage integrase family
           [Peptostreptococcus stomatis DSM 17678]
 gi|306492720|gb|EFM64748.1| site-specific recombinase, phage integrase family
           [Peptostreptococcus stomatis DSM 17678]
          Length = 357

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/252 (13%), Positives = 80/252 (31%), Gaps = 43/252 (17%)

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLS---VERPKRKTEGIRPWTKEDMQQFKSFWSEG-- 189
           +  +S+  LFK+  R   +  +       ++ PK + + I+    +++         G  
Sbjct: 104 RKKSSLSTLFKFLYRNGQLKDDISGGFNPIKLPKPQPDAIKRLEIDEVATMLDVVENGNG 163

Query: 190 -------------SQPRLAFEFLLYSGLRCSDSCRAGVQHL---QNNIFSIKTQKTGTII 233
                         + +      +  GLR ++     +      +      +  K G  +
Sbjct: 164 LTDKEKDYWLKTKLRDKAILVLFITYGLRLNELRELNISSFNFSRGEFMIYR--KRGKEV 221

Query: 234 TVELPDGFMKLLA-----MTPIGKE-------TFFINNDKQKMNATQFSIWFKAKATKA- 280
            + + +   +++        P   +         F++  K++M +       K   + A 
Sbjct: 222 LMPINEACERVVKDYIDYERPKSSDIEEEYLDALFLSLQKKRMTSRSIRDLVKKYTSIAM 281

Query: 281 ----GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
                   S H +R  +AT   + G + +++        V   + Y   A R  L     
Sbjct: 282 KTSRDKGYSPHKLRATAATSLIETGFSIYDVQNLMDHDNVTTTQLY--AAHRKNLKRDIV 339

Query: 337 RRISSVVDSDDP 348
               + +D D P
Sbjct: 340 ENF-NWLDEDTP 350


>gi|228948404|ref|ZP_04110687.1| Site-specific recombinase, phage integrase [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228811391|gb|EEM57729.1| Site-specific recombinase, phage integrase [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
          Length = 392

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 45/366 (12%), Positives = 109/366 (29%), Gaps = 44/366 (12%)

Query: 18  HGKIIYYFRKG-----HGRRIRLPYPHESTFIPAYMSALT-GSTPKREYINSPRKKPTTL 71
            G  ++ FR         RR +    ++S    AY   L   ++     +   +    T+
Sbjct: 20  KGVKLWCFRHRYYDSLGKRREKYKQGYKSE-NEAYRDLLEVKTSILNGEVKQVKNSNLTI 78

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHIRSGVES---RK 127
              +  + ++       ++S    E+     ++   G +   ++     +    +   + 
Sbjct: 79  SEWLDIWYETHK-NEWKISSCSQRENAIKYQMKPLLGKYKLAELDKSTYKRVYINELLKN 137

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           + PS+   F    ++    AV  E +  N    +  P  +      +T E++ +F +   
Sbjct: 138 YKPSTVQLFHRLFKIAINAAVDDELIPRNRFNKITIPNEEKTVENFFTAEELNEFIAAAK 197

Query: 188 --EGSQPRLAFEFLLYSGLRCSDSCRAGVQHL------------QNNIFSIKTQKTGTII 233
             E          L ++GLR  ++     +++            ++N  +   +   +  
Sbjct: 198 KYENITNYSIILLLAFTGLRKGEALGLQWKNINFEEKTLTVERTRDNKGTRTPKTKNSFR 257

Query: 234 TVELPDGFMKLLAM---------------TPIGKETFFINNDKQKMNATQFSIWFKAKAT 278
           T+ + D  +  L                        F        +        F+    
Sbjct: 258 TILIDDTLINQLKAYRTWCKKTKLSFGLHLQDDDFIFISYQSGTPITDNPLMYSFQRILK 317

Query: 279 KAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
              + K + HG+R   AT+          +    G       + Y        L  ++  
Sbjct: 318 HTTLKKITPHGLRHTHATLLISQRIPVKVIADRLGNTPQMIFDIYGHS--FKELEEESVA 375

Query: 338 RISSVV 343
             S+ +
Sbjct: 376 AFSTSL 381


>gi|149196595|ref|ZP_01873649.1| phage integrase [Lentisphaera araneosa HTCC2155]
 gi|149140275|gb|EDM28674.1| phage integrase [Lentisphaera araneosa HTCC2155]
          Length = 298

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/277 (12%), Positives = 86/277 (31%), Gaps = 28/277 (10%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           + +      +      + A ++  ++     ++          ++  + ++        T
Sbjct: 4   SFQKYYRAMQLELKLQAKAKSTVDNYLRALRRVNDLIA-SPLDQLKEEELKLYFSELVDT 62

Query: 130 --PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              S+      ++   +++ +++E+      L + R  R        ++++     S   
Sbjct: 63  YSWSTVKMDRCALSFFYQYVLKREWKW----LEIVRIPRVKSLPDILSQDETLLILSHLE 118

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPD-GFMKL 244
           + ++ R     +   GLR S+  R     +        ++  K      V LP   +  L
Sbjct: 119 K-ARYRTCLTAIYSMGLRISEGVRIQTGDICKDRMRLHVRNSKGYKDRLVPLPQVTYQML 177

Query: 245 LAMTPIGKETFFI-----------NNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRK 291
                + +    +           +     M+       FKA    +G+ K  S H +R 
Sbjct: 178 RDYWVMHRNPLLLFPRYAGKSRSNSKTTLHMDKGGVQSAFKAALADSGLAKQVSVHSLRH 237

Query: 292 FSATISADAGATA----HELMATYGWKTVDQAETYTK 324
             AT   +AG  A      +    G  +      Y+ 
Sbjct: 238 SYATHLVEAGVEAGVNLRVIQEILGHSSPATTAIYSH 274


>gi|54022203|ref|YP_116445.1| putative phage integrase [Nocardia farcinica IFM 10152]
 gi|54013711|dbj|BAD55081.1| putative phage integrase [Nocardia farcinica IFM 10152]
          Length = 394

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 46/336 (13%), Positives = 102/336 (30%), Gaps = 39/336 (11%)

Query: 20  KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYR 79
           +    +RK  G++              + +A    +       +P     T+  L  ++ 
Sbjct: 19  RYRVRYRKPGGKQTDKRGFRRKIDAERF-AATVEVSKMSGEYVAPSLGRITVGELAPKWL 77

Query: 80  KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
           +         N R    ++   +  + G      +    + + +     T +   +    
Sbjct: 78  ERKQVDVAESNYRTLESAWRTHVQPRWGTVAVADVELDAVETWIADLGRTVTDPNEPEKV 137

Query: 140 MRV----------------LFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQQF 182
           +R                 +   AV+ + + +NP   VE  PK+  +     T +D+Q+ 
Sbjct: 138 IRKGSGATTIIRAYGVLAGILDTAVKSKRLRVNPARGVENLPKKVGKRHVYLTADDVQRL 197

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ--------------- 227
            +    G++ R     L Y G+R  ++    V  +      +                  
Sbjct: 198 AA--ESGAERRALVLTLAYCGIRWGEAVALRVGDIDFLRRRLTVADNAVQLGVDHAVGHT 255

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKET-FFINNDKQKM--NATQFSIWFKAKATKAGVNK 284
           K+  +  V +P   +  L++   G++    +  D             WF     +A V  
Sbjct: 256 KSRKVRAVPVPQFVLDELSVQCRGRDRKALVFGDGVNYLPRPKSSGGWFAGAVKRARVQA 315

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
            + H +R   A+++  A      L    G       
Sbjct: 316 ITPHDLRHTCASLAVSANVNVLALARMLGHADASVT 351


>gi|328466756|gb|EGF37877.1| integrase/recombinase XerC [Listeria monocytogenes 1816]
          Length = 357

 Score = 78.5 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 43/295 (14%), Positives = 95/295 (32%), Gaps = 29/295 (9%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESR-- 126
           T       Y+K      +  ++  +  S  ++ I+    +    +I  K I         
Sbjct: 56  TFLSFWEIYKKDMK-NRIRESTWETKISIVERKILPYFKNRKMSEIAPKDIIQWQNEMIS 114

Query: 127 -------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKED 178
                   ++P         +  +F  AVR   +  NP        K K+  +  WTKE+
Sbjct: 115 YRDKNGKAYSPVYLKTLHNQLSAMFNHAVRFYELKSNPARKAGNMGKEKSVEMLFWTKEE 174

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT--------- 229
            Q+F     + +    AFE L + G+R  +           N  ++   K+         
Sbjct: 175 YQKFSDSMMDKAISFYAFEILYWCGIRLGELLALTASDFDFNKGTLSISKSCQRLKGMDV 234

Query: 230 -------GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
                   +   +++P+   + +         +  +     +  +         A +  +
Sbjct: 235 ITEPKTPKSNRIIQMPEFLGEEIQEYIQSIYKWEPDERLFPITKSYLHSEMTRGAKEQKI 294

Query: 283 NK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
            +   H +R    ++  D+G +A  +    G +++D    Y       ++ I N 
Sbjct: 295 KRIRIHDLRHSHVSLLIDSGFSAVAIADRLGHESIDVTYRYAHLFPTKQMEIANM 349


>gi|312902063|ref|ZP_07761324.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0470]
 gi|311290845|gb|EFQ69401.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0470]
          Length = 309

 Score = 78.5 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 44/288 (15%), Positives = 91/288 (31%), Gaps = 44/288 (15%)

Query: 73  WLISEYRKSAHWGSL------AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
            L  EY   + W  L         S   +     ++   +     + +  +  +  +   
Sbjct: 9   QLFHEYF--SEWVELYKVGAIRDISLQKYYIAEQRLAELAPGLKVKHLDRQRYQQLLNDY 66

Query: 127 KHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV----ERPKRKTEGIRPWTKEDMQ 180
             T    + + F   ++     AV +  ++ NP   +    + P+ K        + ++Q
Sbjct: 67  ALTHERQTTMDFHHQLKGAILDAVDEGLISKNPTRKIVIKGKTPRPKKSKF--LNQFEVQ 124

Query: 181 QFKSFWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSIKTQKT--------- 229
                   G Q    +  LL   +GLR S++     +    +   I  +KT         
Sbjct: 125 ALLKELELGEQLNWDWFILLVVKTGLRFSEALALTPKDFDFSKQKITIEKTWNYKNPTGF 184

Query: 230 -----------GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKAT 278
                         I  +    F +L+   P  +  F      +  N+T  +   K    
Sbjct: 185 FQSTKNESSKRKVQIDWQTAMQFSQLIRNMPPMEPIFV---KGRVFNST-INSRLKVLCR 240

Query: 279 KAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
           +A +   + H +R   A++   AG +   +    G  ++    ETY  
Sbjct: 241 RAQIPVITVHSLRHTHASLLLFAGVSIASVATRLGHSSMTTTQETYLH 288


>gi|303234412|ref|ZP_07321051.1| site-specific recombinase, phage integrase family [Finegoldia magna
           BVS033A4]
 gi|302494528|gb|EFL54295.1| site-specific recombinase, phage integrase family [Finegoldia magna
           BVS033A4]
          Length = 374

 Score = 78.5 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 42/288 (14%), Positives = 96/288 (33%), Gaps = 39/288 (13%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVES--- 125
           + +     Y++      +  N+  + E+  + +I+   GD    +I    I         
Sbjct: 58  SFREFFELYKRDRK-PRIRENTWRTKEAIVNQKILPYIGDLMLNEINNVTIIQWQNELMK 116

Query: 126 ------RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKED 178
                 + ++P+        +  +   A R   +  N    V    +++ + +  WT+++
Sbjct: 117 IKDKNGKNYSPTYLRTIHAQLSSILNHACRYYNLKTNVARDVGSMGEKEADEMLFWTQDE 176

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG----------------VQHLQNNIF 222
            ++F     +  +   AFE L + GLR  +                     +Q +     
Sbjct: 177 YERFIEAIKDKPESFYAFELLYWCGLRMGELLALTQEKFDFERHTLKIDESLQRIDGKNV 236

Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
               +   +I T+ +P+     +       ++F+    K K     FS  +       G 
Sbjct: 237 ITAPKTKKSIRTIVMPEFLTDEIKEYI---DSFY--KLKSKDLIFNFSKSYLHHEMDRGS 291

Query: 283 NKS------AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            KS       H +R    ++  + G +A  +    G +++D    Y  
Sbjct: 292 KKSQVKRIRIHDLRHSHVSLLIELGFSATAIADRVGHESIDITYRYAH 339


>gi|253564822|ref|ZP_04842278.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|251946287|gb|EES86664.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
          Length = 410

 Score = 78.5 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 52/283 (18%), Positives = 103/283 (36%), Gaps = 42/283 (14%)

Query: 72  KWLI-SEYRKSAHWG------SLAVNSRISFESYFDQIIRKSG----DFDYRKITTKHIR 120
           + LI  EY +S           L    R  +      +    G    DFD+   T KH +
Sbjct: 125 RALIGKEYTESTVTKFDTSINRLKEYIRSRYHRDDMMLAELDGQFIRDFDFWLKTDKHCQ 184

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
           +         +SA+++L +++ + + A+   ++  +P   + R K++   +   ++E++ 
Sbjct: 185 N---------NSALKYLKNLKKVVRIALANGWIKKDPFYGI-RFKQEEVNVEFLSREELD 234

Query: 181 QFKSFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQH-LQNN----IFSIKTQKTGTI 232
              +         Q R  F F  ++ L   D  +   +H +++N          QKT  +
Sbjct: 235 ILMNKEFAIKRLEQVRDIFVFCCFTALAFVDVQQLSREHLIKDNNGALWIRKARQKTNQM 294

Query: 233 ITVELPDGFMKLL-----AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--S 285
             + +     ++L         I K         Q+MNA     + K  A   G+ K  +
Sbjct: 295 CNIPVLSIPQRILGKYEDNAECIKKGVLLPVISNQRMNA-----YLKEIADLCGIAKRLT 349

Query: 286 AHGVRKFSATI-SADAGATAHELMATYGWKTVDQAETYTKGAD 327
            H  R  +AT+       +   +    G   +   + Y K  D
Sbjct: 350 THVARHTAATVVFLANDVSMENVSKILGHSNIRMTQHYAKVLD 392


>gi|126666155|ref|ZP_01737135.1| Phage integrase [Marinobacter sp. ELB17]
 gi|126629477|gb|EBA00095.1| Phage integrase [Marinobacter sp. ELB17]
          Length = 408

 Score = 78.5 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 45/329 (13%), Positives = 110/329 (33%), Gaps = 36/329 (10%)

Query: 52  TGSTPKREYINSPRKKPTT--LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF 109
           +G+    E  +       T  +     ++ + +     + ++R         +     + 
Sbjct: 76  SGAGINDEGADPEVNAAQTPYVADFADQWFQESKIQWRSSHTRNVVSILDSSLKPAFKNT 135

Query: 110 DYRKITTKHIRSGVESRKHT----------PSSAIQFLTSMRVLFKWAVRQEYVAINPCL 159
              +IT   I +                  P +    LT +R++   A  + +   NP  
Sbjct: 136 RMAEITKADILAARTKMAKRRGRGASGLMAPKTINSHLTILRMIMTEASER-FEFDNPYR 194

Query: 160 SVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN 219
           +++  K +   I P++  ++++   +  E    R  ++   Y+G+R  +       ++  
Sbjct: 195 NIKPLKLQRVHIEPFSLAEVERICKYVRE--DYRNYYQLRFYTGMRTGEIDGLKWANVDF 252

Query: 220 NIFSIKTQKT------------GTIITVELPDGFMKLLAM--TPIGKET--FFINNDKQK 263
               I  ++T            G+   + +     + L      IGK +   F N + Q 
Sbjct: 253 EKQEILVRETLIHGKTEYTKTDGSQREIPMFGPVYEALKAQHAAIGKLSKFVFCNREGQP 312

Query: 264 MNATQFSI--WFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-E 320
           ++    +   W+          +  +  R  +AT+   +G     +    G  + +   +
Sbjct: 313 LDHNNVTKRVWYPLLEALKLTKRRPYQTRHTAATLLLASGENPEWVARVLGHSSTEMLFK 372

Query: 321 TYTKGA-DRIRLGIKNSRR-ISSVVDSDD 347
            Y++   +  R+      R + S VDS  
Sbjct: 373 VYSRFIPNLTRMDGSAFERLLGSRVDSRK 401


>gi|134045674|ref|YP_001097160.1| phage integrase family protein [Methanococcus maripaludis C5]
 gi|132663299|gb|ABO34945.1| phage integrase family protein [Methanococcus maripaludis C5]
          Length = 333

 Score = 78.5 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 49/320 (15%), Positives = 91/320 (28%), Gaps = 44/320 (13%)

Query: 57  KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRIS---FESYFDQIIRKSGDFDYRK 113
           ++  I SP++      +LI  + +   +  +  ++          F       G      
Sbjct: 15  QKTKIESPKRLEEHNPYLIK-FIEEREFDKIKESTIKEDVLRLRIFLSFCDDIGKIPETM 73

Query: 114 ITTKHIRSGVESRKHTPSS------AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167
              +  R  V   K    +          L     LFK+    E+   N C  +ER K  
Sbjct: 74  DYHEFKRFFVYLEKKRGCTHQTLVRYYNLLKVFYRLFKFTAFNEF--NNEC--IER-KTF 128

Query: 168 TEGIRPWTKEDM--QQFKSFWSE------GSQPR--LAFEFLLYSGLRCSDSCRAGVQHL 217
           ++  +  + +D+  +       E       ++ R  L    L  +G R S+  R      
Sbjct: 129 SKKSKTRSYDDVNNEIMDKVLDEILDGNSATKNRDGLMMLVLWETGCRRSEVIRIKYNDF 188

Query: 218 Q--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK-----ETFFINNDKQKMNAT--- 267
                   +   K G    V +      L+            E F   ++K K+      
Sbjct: 189 DFKTGQIRLTDTKNGEDRYVVVSKKTTNLIREYSSENILKGPENFIFQSEKGKLGKQVKP 248

Query: 268 ---------QFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
                               +AG     H +R   A    D G +   +    G   V  
Sbjct: 249 GHLSEVFRRAIDNLISKGEIEAGKRYVLHSLRHGRAVALLDEGTSVEIVKEILGHSDVKT 308

Query: 319 AETYTKGADRIRLGIKNSRR 338
              Y    +R +  + + R+
Sbjct: 309 TMIYAHAKERTKKMLPDIRK 328


>gi|134296364|ref|YP_001120099.1| phage integrase domain/SAM domain-containing protein [Burkholderia
           vietnamiensis G4]
 gi|134139521|gb|ABO55264.1| phage integrase domain protein SAM domain protein [Burkholderia
           vietnamiensis G4]
          Length = 422

 Score = 78.5 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 48/308 (15%), Positives = 104/308 (33%), Gaps = 28/308 (9%)

Query: 50  ALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF 109
           A   S P          K   L  ++ ++ +      L  ++ +++++   +  +   + 
Sbjct: 97  ASLESVPTASATQPNADKGLKLGDIVDKFFQLK--KQLKPSTVLAYKNVASETAKFLRNP 154

Query: 110 DYRKITTKHIRSGVE--SRKHTPSSAIQFLTSMRVLFKWAVRQE-YVAINPCLS---VER 163
              KI    I    E  ++ ++P +    + ++R LF +A++Q  Y   NP +    + +
Sbjct: 155 IITKIGISDITRYQEHIAKTNSPRTIDNKIATLRTLFYFAIKQGYYFGDNPAVGRMILSK 214

Query: 164 PKRKTEGIRPWTKEDM------QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217
             +   G   +  +++      + F    S+           L++G R S+         
Sbjct: 215 TDKAKSGYAIFESKEISTIFQSEIFNKEKSDDPDFYWTLMLGLFTGCRISEITSLKTDQF 274

Query: 218 -----QNNIFSIKTQKTGTII-TVELPDGFMKL-LAMTPIGKETFF--INNDKQKMNATQ 268
                  N   I+  KT   +  + +      L LA     K+  F       +  +   
Sbjct: 275 FVSDEGINFIRIRESKTLAGVRDIPISKKLFDLGLADFIKDKDQIFKYQTRLGKG-SGNA 333

Query: 269 FSIWFKAKATKAGVNKS---AHGVRKFSATISADAGATAHELMATYGWKTVDQ-AETYTK 324
               FK    +  + +S    H +RKFS  +    G         +G +  +    TY+ 
Sbjct: 334 VGKKFKRLLDELKITRSKLVFHSLRKFSNDLFMKEGVPFEPRCQFFGHEIENVNVATYSN 393

Query: 325 GADRIRLG 332
                +L 
Sbjct: 394 KFSIEQLA 401


>gi|254850894|ref|ZP_05240244.1| integrase [Vibrio cholerae MO10]
 gi|3851664|gb|AAC72397.1| integrase [Vibrio cholerae]
 gi|21885342|gb|AAL59748.1| integrase [Vibrio cholerae]
 gi|254846599|gb|EET25013.1| integrase [Vibrio cholerae MO10]
 gi|259156334|gb|ACV96280.1| integrase [Vibrio cholerae Ind4]
          Length = 413

 Score = 78.5 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 53/351 (15%), Positives = 119/351 (33%), Gaps = 39/351 (11%)

Query: 10  FVTKERTRHGKIIYYFR-KGHGRRIR--------LPYPHESTFIPAYMSALTGSTPKREY 60
            ++   +  GKI++ FR +  G++ R        +        +    + L      + Y
Sbjct: 27  GLSARVSPKGKIVFQFRYRFDGKQQRVDIGTYPLMKLAEARNELDRLRAVLDQGRNPKLY 86

Query: 61  INSPRKK---PTTLKWLISEYRKSAHWGSLAVNS-RISFESYFDQIIRKSGDFDYRKITT 116
           +   R K     + + +  ++  SA    L   +      S    ++ + G +    I  
Sbjct: 87  LQQERAKYSANQSFESIFRDWIDSAGKQGLKEKTWHYQKRSSEIYLLPRLGKYPLTDINE 146

Query: 117 KHIRS-GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK---RKTEGIR 172
             +R+   E  + +PS+  + ++ +   + W + ++ + IN    +   K   +K +  R
Sbjct: 147 LSLRNCLREVSESSPSNTERLVSVLHKFYDWLIDEQILEINAAAGITAKKVSGKKGKRTR 206

Query: 173 PWTKEDMQ---QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN--------I 221
                +++   ++        + R+  + LL  G R  +  +A   H             
Sbjct: 207 VLNDNEIRILWRYLHESKITEKNRIYIKLLLLLGGRKGELIQAEKHHFDLQSAMWTVPIE 266

Query: 222 FSIKTQKTGTIITVELPDGFMKLLA-MTPIGKETFFINNDKQK-MNATQF--------SI 271
              + +K G  I   L    ++L+     + K T+    + Q+ +    F         I
Sbjct: 267 IRKQGEKIGAPIMRPLIKPAIELIELAMQMSKSTYLFPANGQEELATNGFDTTIPNNVKI 326

Query: 272 WFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           W +   +    + S H +R+   T  + A  T        G         Y
Sbjct: 327 WARRSLSVEMEHWSMHDLRRTMRTRMS-AITTQEVAELMIGHSKKGLDAIY 376


>gi|301311317|ref|ZP_07217244.1| transposase [Bacteroides sp. 20_3]
 gi|300830403|gb|EFK61046.1| transposase [Bacteroides sp. 20_3]
          Length = 411

 Score = 78.5 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/273 (13%), Positives = 90/273 (32%), Gaps = 36/273 (13%)

Query: 86  SLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGVESRKHT----PSSAIQ 135
             +  +   +++   ++ R         D  + ++T + IR+     K       ++ ++
Sbjct: 128 DYSPVTINRYKNVVKKLQRLIPSYYGKEDVTFHELTPEFIRAFDIYLKTEGGLCRNTIVR 187

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WSEGSQP 192
           ++   +     A+ +E++  NP    +  + +T+     T +++Q               
Sbjct: 188 YMKCFKKFTNMALAKEWMRKNPFYGYKMEQDETD-PVFLTYDELQTLMKKKFTIPRLELV 246

Query: 193 RLAFEFLLYSGLRCSDSC----------RAGVQHLQNNIFSI-KTQKTGTIITVELPDGF 241
           R  F F  ++GL  SD              G   ++     +   +K  +I  + L    
Sbjct: 247 RDIFVFACFTGLAFSDVATLSGENLVQDNLGDWWIRKGRIKLEHRRKASSISNIPLLPVP 306

Query: 242 MKLLAMTPIGKETFFINNDK---QKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATI 296
           + +L      +E             M   + + + K  A   G+ K  + H  R    T 
Sbjct: 307 LAILEKY---REHPVCIKKGCCLPVMCNQKMNSYLKEIADFCGIKKNLTTHVARHTFGTT 363

Query: 297 --SADAGATAHELMATYGWKTVDQAETYTKGAD 327
              A+      ++    G  +    + Y +  +
Sbjct: 364 VTLANN-VPLQDVSVMLGHASTRMTQHYARVMN 395


>gi|83815580|ref|YP_445628.1| phage integrase domain/SAM domain-containing protein [Salinibacter
           ruber DSM 13855]
 gi|83756974|gb|ABC45087.1| Phage integrase, N-terminal SAM-like domain protein [Salinibacter
           ruber DSM 13855]
          Length = 302

 Score = 78.5 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 44/263 (16%), Positives = 100/263 (38%), Gaps = 32/263 (12%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD---YRKITTKHIRSGVESRKH-- 128
           L+  + +S      +  +R ++ +       ++ D      + IT + IR+ VE+     
Sbjct: 3   LLDSFLRSLS----SSQTRRAYRTDLQAFFSQAEDITADLVQAITHEDIRAFVETMHDLD 58

Query: 129 -TPSSAIQFLTSMRVLFKWAVRQEYVAINPCL--SVE--RPKRKTEGIRPWTKEDM---- 179
               +  + L ++R  F WA+ +     NP     V+   P   +  +R  TK ++    
Sbjct: 59  LAAGTQRRRLAALRSFFDWAMTERIYDRNPARHPDVKPMPPADASSSVRSLTKLEVRDTL 118

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---NNIF-SIKTQKTGTIITV 235
           +   +    G + +      +++ LR S+     V+ ++         +  + TG    V
Sbjct: 119 EAAGASDETGLRDQAIILTTIHAALRRSEIAAVAVEDVRPLGRYWILEVNPEGTGEE-YV 177

Query: 236 ELPDGFMKLLAMTPIG----KETFFIN----NDKQKMNATQFSIWFKAKATKAGVN-KSA 286
            +PD  + ++              + +    N  + ++A       +   T AGV   + 
Sbjct: 178 RIPDQVVSVIDNVKDQFGLTAGPLWRSMSNRNRGEPLSADAIYTIVRRAGTAAGVGSITI 237

Query: 287 HGVRKFSATISADAGATAHELMA 309
             +R+    ++AD GA+  ++ A
Sbjct: 238 DTLRRTGLRLAADGGASLSQIQA 260


>gi|262381028|ref|ZP_06074166.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_33B]
 gi|262296205|gb|EEY84135.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_33B]
          Length = 426

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 52/316 (16%), Positives = 100/316 (31%), Gaps = 59/316 (18%)

Query: 47  YMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS 106
           Y   +     +  +  +   K  ++  L+ E+     +  L+ ++   F    + +    
Sbjct: 128 YKEFIDTVGRQNAWTKTSHYKHNSIMHLLEEFNPQIKFDDLSEDTLQDF---VEFLREYK 184

Query: 107 GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER--P 164
           G  +                    ++  ++L  ++    WA  + Y          R  P
Sbjct: 185 GIRN--------------------TTLNKYLHFIKQFLLWADDKGYNTR---KDYRRFSP 221

Query: 165 KRKTEGIR-------PWTKEDMQQFKSFWSEGS--QPRLAFEFLLYSGLRCSDSCRAGVQ 215
           + K             W +E M+ +  +  EG+    R  F F  ++GLR SD       
Sbjct: 222 RLKGANFELKKVIYLTW-EELMRIYNMYIKEGTLSTVRDVFCFCCFTGLRYSDVYNLRKT 280

Query: 216 HLQNNIFSIKTQKTGTIITVELPDGFMKLLAM-----TPIGKETFFINNDKQKMNATQFS 270
            + N    I TQK    I +EL      +L          GK    ++N K  M+     
Sbjct: 281 DIINGKIDIVTQKDSDNIQIELNKYSKSILEKYEDIELKNGKALPVLSNQKYNMHLKDLG 340

Query: 271 IWFKA------------KATKAGVNK----SAHGVRKFSATISADAGATAHELMATYGWK 314
              +             K  +  ++K    + H  RK     +   G     +M   G  
Sbjct: 341 KMAELDSEITEVWYEGNKRIQQTLHKWERLTTHVARKTFVVNALMLGIPPQVIMRWTGHN 400

Query: 315 TVDQAETYTKGADRIR 330
            +   + YT   D+++
Sbjct: 401 DLKAMKPYTHIVDKLK 416


>gi|229136651|ref|ZP_04265326.1| Integrase-recombinase [Bacillus cereus BDRD-ST196]
 gi|228646811|gb|EEL02971.1| Integrase-recombinase [Bacillus cereus BDRD-ST196]
          Length = 390

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/246 (13%), Positives = 83/246 (33%), Gaps = 26/246 (10%)

Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER--PKRKTEGIRPW 174
           K +++G     +  ++  +    +R   K   +  Y+       ++R     +    R  
Sbjct: 139 KEVKNGRNEDTYAIATLAKKTVLIRSFLKHLYQFGYIEAPLQEELQRANVNEQDRPNRDL 198

Query: 175 TKEDMQQFKSFWSEGSQ--PRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGT 231
           + +++ +   F+ +            L  +G R  + C   V+ +  +  + +K    G 
Sbjct: 199 SYDEVMKILGFYKDRGHLVNYTILLALASTGARIQELCTTRVKDVHYDGRYWLKVTGKGD 258

Query: 232 IIT-VELPDGFMKLLAMTPIGK-----------ETFFINNDKQKMNATQFSIWFKAKATK 279
            +  + + +   + +      +              F+N      N+   S    A   K
Sbjct: 259 KVRELFVSEHLYQCICEMRRRRGFETVLNQGDENPLFVNQRGNFYNSKTLSNQVTAMINK 318

Query: 280 AGVN--------KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGADRIR 330
             ++         +AH  R   A ++ + G A  + LM T G + +   + Y +   + +
Sbjct: 319 TKLDFLKHRENPVTAHTFRHAFAIMAVEQGHADLYHLMQTLGHEDIQTTKIYLEKHMKRK 378

Query: 331 LGIKNS 336
             +  S
Sbjct: 379 NNVGAS 384


>gi|227461198|gb|ACP39544.1| putative integron integrase [uncultured microorganism]
          Length = 299

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 39/291 (13%), Positives = 81/291 (27%), Gaps = 58/291 (19%)

Query: 87  LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA----IQFLTSMRV 142
           L+  +  ++  +  + +   G    R +    I   V         A     Q L ++  
Sbjct: 13  LSRRTEQAYRFWIRKYVHFHGRRHPRDVGPAGIAPFVNWLATKRQVAASTQSQALNAVLF 72

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202
            ++  +  +   ++    + R +R +      T E++++      EG+   LA E L  +
Sbjct: 73  RYRDVLELDVGQLD---GLRRVQRLSRLPVVLTIEEVRRLLGAL-EGTSKLLA-ELLYGT 127

Query: 203 GLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLA-------------M 247
           GLR ++      + +        ++  K G   T  LP      +              +
Sbjct: 128 GLRITECMTLRTKDIDLSATTIHVRAGKGGEDRTALLPSRLRDRIRDQVLAVARLHKRDI 187

Query: 248 TPIGKETFFINNDKQKM--------------------------------NATQFSIWFKA 275
                         +K                                 + +     FK 
Sbjct: 188 AAGAGHAPLPGGLGRKYPNASRELKWQFLFPSRSIRPCPGTGRLLRWHASESTLQKRFKM 247

Query: 276 KATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
                G++K  S   +R   AT     G     +    G + +     YT 
Sbjct: 248 ALLAVGIHKQASVRTLRHSFATHLLATGTDIRTIQLLLGHRNLKTTRIYTH 298


>gi|118470300|ref|YP_889987.1| gp41 protein [Mycobacterium smegmatis str. MC2 155]
 gi|118171587|gb|ABK72483.1| gp41 protein [Mycobacterium smegmatis str. MC2 155]
          Length = 404

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 54/384 (14%), Positives = 100/384 (26%), Gaps = 74/384 (19%)

Query: 6   RLPPFVTKERTRHGKIIYYFRK------GHGRRIRLPYPHESTFIPAYMSALTGSTPKRE 59
           R+P +V K         Y  R       G  R+ R  +      +  Y  A+ G   +  
Sbjct: 7   RIPDYV-KVIDLDSGRRYEVRPEVTGADGKRRQKRERFKTLKEAVDHYT-AIAGDRGRGV 64

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119
           ++        T++  +  +        +   +  ++ +    I+   G    + IT   +
Sbjct: 65  HVAPSEL---TVEDAVDSWLLG---QRIRPKTMSAYITSLRPIVDHLGKRTVQSITKDDL 118

Query: 120 RSGVESRKHT-------------------------PSSAIQFLTSMRVLFKWAVRQEYVA 154
              V++ +                            SS    L   R +F+  V Q  V 
Sbjct: 119 EQVVQALRAGTSKMGTWNAPTKLTKAAKKVRSPWAASSINPMLARTRSIFEDLVNQGVVV 178

Query: 155 INPCLSVERPKRKTEGI-RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG 213
            N    V+     TE        E + Q  +              +L  GLR  +     
Sbjct: 179 RNVAALVKPLATDTEKTMNTLNAEQVTQLLAVTDSHCYGIAWRLAVL--GLRRGEILALR 236

Query: 214 VQ--HLQNNIFSIKTQ-------------KTGTII-TVELPDGFMKLLAMTP-------- 249
                      +I                KT T + T+ +P+     L            
Sbjct: 237 WDAVDFDAGTLAISAARLATAGGATTGAPKTKTSVRTLPMPEDLTAALRRVRKRQKEYRL 296

Query: 250 ------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGA 302
                        ++           +  ++     AG+     H  R   AT+   +G 
Sbjct: 297 KLGSKWTDSGYVVVDEFGVAPYPDTLTAAWRKTLANAGLPHVRLHDARHSCATLMHLSGV 356

Query: 303 TAHELMATYGWKTVD-QAETYTKG 325
               + A  G +       TY   
Sbjct: 357 PTVVIAAWLGHQDPGFTLRTYAHS 380


>gi|241888620|ref|ZP_04775927.1| integrase [Gemella haemolysans ATCC 10379]
 gi|241864643|gb|EER69018.1| integrase [Gemella haemolysans ATCC 10379]
          Length = 367

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 44/275 (16%), Positives = 96/275 (34%), Gaps = 34/275 (12%)

Query: 85  GSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFL--TSMR 141
             +  +S  + ++  D +I+    +     I   + ++ +     T       L  +++ 
Sbjct: 83  TQVKESSYHTIKTILDKRILPVFRELKIINIKLPYYQNYINEVSKTYKKGYVTLIKSTIV 142

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIR-PWTKEDMQQFKSFWSEG--SQPRLAFEF 198
            +  +AV+ E +  N     + PK+  E  +  +TK+++ QF     E   S+  +AF  
Sbjct: 143 QILDYAVKMEIIPTNYMKLTKVPKKIEEKKKNYYTKKELLQFLKIVKENYSSETYIAFRI 202

Query: 199 LLYSGLRCSDSCRAGVQHLQ---------------NNIFSIKTQKTGTIITVELPDG--- 240
           L ++G+R  +      + +                 +   + T KT +   +   D    
Sbjct: 203 LAFTGIRLGELRALTWKDINFKKKTLTISKNMMNIGSKSKVSTTKTKSSERIIFLDDETI 262

Query: 241 -----FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSAT 295
                + +L     I    F    + +          ++       +  + HG R   AT
Sbjct: 263 KELKNYRELDNFISINNGIF--TKNSRHYFNGMLMRIYRDFPKLKQI--TPHGFRHTHAT 318

Query: 296 ISADAGATAHELMATYGWKTVDQA-ETYTKGADRI 329
           +  ++  +A E+    G K +     TYT   D  
Sbjct: 319 LLFESDLSAKEIQNRLGHKDITTTLNTYTHITDEK 353


>gi|229551651|ref|ZP_04440376.1| integrase [Lactobacillus rhamnosus LMS2-1]
 gi|229314969|gb|EEN80942.1| integrase [Lactobacillus rhamnosus LMS2-1]
          Length = 307

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/278 (12%), Positives = 93/278 (33%), Gaps = 33/278 (11%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
            K  I  Y+++     +   +   +E+    +   +      ++T +  +  +     T 
Sbjct: 12  FKKWIETYKQNY----VTPVTYRKWENTERMLKLLAPQLKVTQLTRRSYQQILSQYAETH 67

Query: 131 S--SAIQFLTSMRVLFKWAVRQEYVAINPCLS--VERPKRKTEGIRPWTKEDMQQFKSFW 186
              + + F   ++ + +  + +  +  +P L   +   + +   I+    E++++     
Sbjct: 68  EHQTCMDFHHQLKCVIQDILDEGLIKRDPTLRAVIGGTRHREHKIKFLQPEELEKLLQDL 127

Query: 187 SEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSIK---------------TQKT 229
           + G +    +  LL   +GLR +++          +  +++                 K 
Sbjct: 128 NLGKELDYDYMILLLAKTGLRFAEALGLTPADFDLDSLTLRINKTWDYKSATGKFAPTKN 187

Query: 230 GTIITVELPD-----GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284
            + +     D      F  L+   P  K  F    D +++     +   K     AG+  
Sbjct: 188 KSSVRTIALDYKTAAKFAMLIQSLPKDKPIFVP--DGKRIYNETINDILKRHCENAGIPV 245

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
            SAHG+R   A++    G     +    G  +    + 
Sbjct: 246 ISAHGLRHTHASLLIGKGINLQAVAKRLGHSSSLTTQK 283


>gi|189463771|ref|ZP_03012556.1| hypothetical protein BACINT_00104 [Bacteroides intestinalis DSM
           17393]
 gi|189438721|gb|EDV07706.1| hypothetical protein BACINT_00104 [Bacteroides intestinalis DSM
           17393]
          Length = 429

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 43/312 (13%), Positives = 99/312 (31%), Gaps = 62/312 (19%)

Query: 71  LKWLISEYRKSAHWGSLA--VNSRISFESYFDQII-----RKSGDFDYRKITTKHIRSGV 123
           L+ L+ EY K+ +        +++ ++ +   ++      RK     +     K      
Sbjct: 118 LRRLVGEYEKNVNRKGKRGIESTKATYLTALGRLEDYDKQRKVPIGSFDDFNKKFFVDFT 177

Query: 124 E----------SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAIN---------PCLSVERP 164
                       + +T ++ I  L  ++ L   A   E    N         P  S E+ 
Sbjct: 178 NYLYEYSYGKTGKHYTQNTIINTLKVIKNLLHRAYDSEMTTNNYFLKVQTTLPADSSEQI 237

Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
             + + I+  +    +       +  + R AF    Y+ LR SD  +     ++  + S+
Sbjct: 238 YLQEKEIQKLSLAKTES-----DQEREVRDAFIIACYTALRISDIQQLNKATVRKGVISL 292

Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284
             +KT  ++ + +      L+                   +  + +   K  A + G+N+
Sbjct: 293 YQKKTKELVEIPILKEIAPLIEHYQQIGFPVI--------DKVKANKIIKVLAARCGINE 344

Query: 285 -----------------------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
                                  S H  R+   T     G   + +M+  G ++    + 
Sbjct: 345 AISRKEYRGGETTIVTIPKYELISFHTARRSCVTNLYKRGYPINYVMSLSGHRSFQAFQR 404

Query: 322 YTKGADRIRLGI 333
           Y + + +  +  
Sbjct: 405 YMRASSKELMTD 416


>gi|191167668|ref|ZP_03029477.1| site-specific recombinase, phage integrase family [Escherichia coli
           B7A]
 gi|190902267|gb|EDV62007.1| site-specific recombinase, phage integrase family [Escherichia coli
           B7A]
          Length = 402

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 46/325 (14%), Positives = 104/325 (32%), Gaps = 28/325 (8%)

Query: 49  SALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSG 107
           +A      ++    +  K          ++ +      +A  +R    + F++ +  K G
Sbjct: 77  AAGKSPAKEKARDKARVKDAENFGAWGEKWLRGYQ---MADVTRDMRRATFERELKPKFG 133

Query: 108 DFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165
           +    +IT + +R+  ++   +  P++A+     +  +F+WA+ +     NP   V    
Sbjct: 134 NQKLTEITHEDLRALTDAIVERGAPATAVLCREIVMQVFRWAIERGQKVENPADLVRPST 193

Query: 166 RKT--EGIRPWTKEDMQQFKSFWS-EGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQNN 220
                   R  T +++     +    G+ P  R A + LL + +R S+   A    +   
Sbjct: 194 IAKFEPRDRALTPDEIGLMYQYMERIGTTPSIRAAAKLLLLTMVRKSELTNATWSEINFT 253

Query: 221 IFSIK----TQKTGTIITVELPDGFMKLLAMTPI---GKETFFINNDKQ--KMNATQFSI 271
                      K      V L    + +         G E    +       M++   + 
Sbjct: 254 EALWTIPKERMKRRNPHLVFLSRQALDIFIALKTFAGGSEYVLPSRYDSDLPMSSATLNQ 313

Query: 272 WFKAKATKAGVNKS------AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
                   A            H +R+ ++T+  +AG     +      +       Y K 
Sbjct: 314 VLTLTYRLAQKEGQSLGKFGPHDLRRTASTLLHEAGYNTDWIEKCLAHEQKGVRAIYNKA 373

Query: 326 --ADRIRLGIKNSRRISSVVDSDDP 348
              D+ R  +++   +        P
Sbjct: 374 EYRDQRRAMLQDWADMIDEWTIRKP 398


>gi|323344120|ref|ZP_08084346.1| integrase [Prevotella oralis ATCC 33269]
 gi|323094849|gb|EFZ37424.1| integrase [Prevotella oralis ATCC 33269]
          Length = 416

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/282 (13%), Positives = 89/282 (31%), Gaps = 26/282 (9%)

Query: 83  HWGSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSG----VESRKHTPSSAIQF 136
                      +  +  + I ++    D  + ++T + I       ++ +     +   +
Sbjct: 136 RAKGTYPAYIYTRRTLAEFIEKEFHSKDVAFGQMTEQFIHDYQSFILDEKGLAIDTCRHY 195

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK-----SFWSEGSQ 191
           L  ++ + + A ++ +           P+ K +  +  ++E  ++ +        +    
Sbjct: 196 LAIVKKVCRKAYKEGHADRCFFAHFSLPQPKEKTPKALSRESFEKIRDLVIPEHHASHIL 255

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHL-----QNNIFSIKTQKTGTIITVELPDGFMKLLA 246
            R  F F  Y+G   +D+      +L            + +K      V+L    + L+ 
Sbjct: 256 ARDLFLFACYTGTAYADAVSVTRDNLFTDDNGGLWLKYRRKKNELRACVKLLPEALALIE 315

Query: 247 M-TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS-ADAGA 302
                 + T F       M         K  A  A +  + + H  R   A++   +AG 
Sbjct: 316 KYRDDDRPTLFPMLHYPNMRR-----LMKCLAVLADIREDLTYHAGRHSFASLITLEAGV 370

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
               +    G   +   + Y K     +L     + I +  D
Sbjct: 371 PIETICKMLGHSNLQTTQVYAK-VTPKKLFEDMDKYIEATKD 411


>gi|281423083|ref|ZP_06253996.1| integrase [Prevotella oris F0302]
 gi|281402796|gb|EFB33627.1| integrase [Prevotella oris F0302]
          Length = 409

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 41/271 (15%), Positives = 92/271 (33%), Gaps = 26/271 (9%)

Query: 94  SFESYFDQIIRKSG--DFDYRKITTKHIRSG----VESRKHTPSSAIQFLTSMRVLFKWA 147
           +  +  + I +K    D  + ++T + I       V+ +     +   +L  ++ + + A
Sbjct: 140 TRRTLAEFIQKKFHSKDLAFGQLTEQFIHDYQSFVVDDKGLAIETCRHYLAIIKKVCRTA 199

Query: 148 VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK-----SFWSEGSQPRLAFEFLLYS 202
            ++ Y           PK++ +  +  ++E  ++ +        S  +  R  F F  Y+
Sbjct: 200 YKEGYADKCFFAHFSLPKQEEKTPKALSRESFEKIRDLVIPEHRSSHTLARDLFLFACYT 259

Query: 203 GLRCSDSCRAGVQHL-----QNNIFSIKTQKTGTIITVELPDGFMKLLAM-TPIGKETFF 256
           G   +D+      +L            + +K      V+L    + L+       ++T F
Sbjct: 260 GTAYADAVSVTRDNLFTDENGGLWLKYRRKKNELRACVKLLPEALALIEKYRDDDRQTLF 319

Query: 257 INNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS-ADAGATAHELMATYGW 313
                  M         K  A  A +  + + H  R   A++   +AG     +    G 
Sbjct: 320 PMLHYPNMRR-----LMKCLAILADIKEDLTYHAGRHSFASLITLEAGVPIETICKMLGH 374

Query: 314 KTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
             +   + Y K     +L     + I +  D
Sbjct: 375 SNLQTTQVYAK-VTPKKLFEDMDKYIEATKD 404


>gi|54303342|ref|YP_133335.1| bacteriophage integrase [Photobacterium profundum SS9]
 gi|46916772|emb|CAG23535.1| Hypothetical bacteriophage integrase [Photobacterium profundum SS9]
          Length = 326

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 45/306 (14%), Positives = 104/306 (33%), Gaps = 21/306 (6%)

Query: 25  FRKGH--GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSA 82
            R     GRR R  +  +     AY   +      R +I         L   IS + +  
Sbjct: 17  VRPKGSEGRRYRRKFSTKRE-ATAYERYIQAQAHNRAWIEKS-SDKRKLSEAISLWWR-- 72

Query: 83  HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTS 139
            +    +      +   + + ++  +    ++T K I      R     +P +  + +  
Sbjct: 73  -YHGQLLKEGAQSKKKLENLSQRMNNPMLCQVTKKRIIDYRSDRLSSGISPRTINKEVAL 131

Query: 140 MRVLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEF 198
           +  +F   +  +EY   +P + + + K + + +   +  ++  F    + G   ++A + 
Sbjct: 132 LSGVFTQMINAEEYHHEHPIIGLRKLKERKQEMAFLSSSEIS-FLLQHASGDMKKIA-KI 189

Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFIN 258
            L +G R +++     +++     +    K G   T  +       ++    G+   F  
Sbjct: 190 CLATGARWNEANDLRAENVTPYRVTFVATKNGNNRTTPISKELFDEISSEKSGR--LFT- 246

Query: 259 NDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
                    +F ++FK+        ++ H +R   A+     G     L    G  T+ Q
Sbjct: 247 -----PCYDKFYLFFKSLNFNLPKGQAVHVLRHTFASHFMQNGGNILTLQKALGHATIQQ 301

Query: 319 AETYTK 324
              Y  
Sbjct: 302 TMEYAH 307


>gi|16129103|ref|NP_415658.1| e14 prophage; predicted integrase [Escherichia coli str. K-12
           substr. MG1655]
 gi|89107986|ref|AP_001766.1| predicted integrase [Escherichia coli str. K-12 substr. W3110]
 gi|3024035|sp|P75969|INTE_ECOLI RecName: Full=Prophage lambda integrase; AltName: Full=Int(Lambda);
           AltName: Full=Prophage e14 integrase
 gi|1787386|gb|AAC74224.1| e14 prophage; predicted integrase [Escherichia coli str. K-12
           substr. MG1655]
 gi|4062718|dbj|BAA35969.1| predicted integrase [Escherichia coli str. K12 substr. W3110]
          Length = 375

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 47/296 (15%), Positives = 94/296 (31%), Gaps = 35/296 (11%)

Query: 58  REYINSPRKKPTTLKWLISEYRKSAH----WGSLAVNSRISFESYFDQIIRKSGDFDYRK 113
            + I + + K  T    +  Y+         G + +N+          +  ++G      
Sbjct: 71  SDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMKLISA 130

Query: 114 ITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAI--NPCLSVERPKRKTE 169
           +  + I   ++       P  A    + +  +FK A     V    NP L+ ++P+RK  
Sbjct: 131 VDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKIT 190

Query: 170 GIRPWTKEDMQQFKSFWSE-GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
             R  + E+ ++              A    L +G R  D  R     + ++   +  +K
Sbjct: 191 RQR-LSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDDHLHVIQEK 249

Query: 229 TGTIITVELPDGFMKL--------LAMTPIGKETFFIN--------NDKQKMNATQFSIW 272
           TG+ I + L      +                  + ++            ++ A   ++ 
Sbjct: 250 TGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMN 309

Query: 273 FKAKATKA------GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           F      A      G   + H  R  S  +  + G    +L    G KT  Q + Y
Sbjct: 310 FSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLDTQKL---LGHKTQQQTDRY 362


>gi|304384354|ref|ZP_07366765.1| integrase [Prevotella marshii DSM 16973]
 gi|304334670|gb|EFM00952.1| integrase [Prevotella marshii DSM 16973]
          Length = 448

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 39/281 (13%), Positives = 88/281 (31%), Gaps = 28/281 (9%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQI------IRKSGDFDYRKITTK---HIRSG 122
              +++Y +    G  +  +   + + +  +           D   ++I         + 
Sbjct: 149 DDFLTDYAQKVECGLKSKRTLQKYRAVYKHLKSFLQTRHHLSDIALKEIQPTFATDFETF 208

Query: 123 VESRKHTPSSAIQFLTS-MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
           + +  H   + +   +  +R+L   AV   ++   P        ++       TKE+++ 
Sbjct: 209 LLTYCHLSHNTVWLYSFPVRMLMHRAVENGWLVRYPFSDYN-ISQQRPERVFLTKEEIRL 267

Query: 182 FK---SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL------QNNIFSIKTQKTGTI 232
                      +  R  F F  ++GL   D      +++       +     + QKT   
Sbjct: 268 LIDAPKLTPAQTFIRDMFLFCTFTGLAYIDLKNLREENIVRSPFDGDVWIRTRRQKTSVE 327

Query: 233 ITVELPD-GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289
           + V+L D     L   + +    +            Q     K      G++K  + H  
Sbjct: 328 VNVKLLDIPLQILDKYSGLSNNGYLFPIPSHVYCCNQLKTIIKK----CGIDKHVTWHVA 383

Query: 290 RKFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           R   AT+     G     + +  G K +   + Y K  +  
Sbjct: 384 RHTMATVVCLSNGMPIESVSSLLGHKCITSTQIYAKITNEK 424


>gi|260900256|ref|ZP_05908651.1| phage integrase family protein [Vibrio parahaemolyticus AQ4037]
 gi|308107542|gb|EFO45082.1| phage integrase family protein [Vibrio parahaemolyticus AQ4037]
          Length = 411

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 59/375 (15%), Positives = 115/375 (30%), Gaps = 45/375 (12%)

Query: 7   LPPFVTKERTRHGKIIYYFRKG---HGRRIRLPYPHESTFI--------PAYMS-ALTGS 54
           LP  V     + G   +  R      G++  +                   Y    + G 
Sbjct: 39  LPTGVRCLVGKSGGKRFLLRYTSPVTGKKASIGLGKHPETDLATLRKTAKEYRQQIIEGV 98

Query: 55  TPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRK 113
            PK E  N   +K  TL+    E      +  LA   R   +     ++ +         
Sbjct: 99  DPKLERDNQTAEKTMTLERFFDE-----VYLPLAKQKRSWKDDAARFRLAKSIHHISIHD 153

Query: 114 ITTKHIRSGVESRKHT---------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP 164
           +T   I       ++          P+S  + L  ++ + + A +     +     V   
Sbjct: 154 LTAADIIKVQMEMQNAVTIKGKPYAPASINRVLALLKTINRQAYKLMDAPL-IADKVSLL 212

Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGSQ--PRLAFEFLLYSGLRCSDS-CRAGVQ-HLQNN 220
           K         ++  +++F                  L  +G R  +   R     + ++ 
Sbjct: 213 KEDNVRTGYLSESQLKEFIGHALNHEDKSIGAYLALLFLTGARDKELRLRLKSDVNWEDK 272

Query: 221 IFSIKTQKTGTIITVELPDGFMKLLAMTP-IGKETFFINNDKQKMNATQFSIWFKAKATK 279
             +I   K G+   + L D  +++L   P +    +     K+     Q    FKA   K
Sbjct: 273 TLTIPHTKNGSSHVLFLSDYMLEILRSVPHVANNPYLFPGRKKGKPVGQPRHAFKAIKAK 332

Query: 280 AGV--------NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330
            G+        N + H  R    ++ A  G + H++        +     Y+K    R R
Sbjct: 333 MGLPDIPGDKANLTLHSARHTVGSLLASQGVSLHDIAKQLNHADLSSTRRYSKLTVGRRR 392

Query: 331 LGIKNSRRISSVVDS 345
              +   R+S +V +
Sbjct: 393 ---EIGSRLSDMVTA 404


>gi|256960370|ref|ZP_05564541.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
 gi|293384343|ref|ZP_06630228.1| DNA integration/recombination/inversion protein [Enterococcus
           faecalis R712]
 gi|293388421|ref|ZP_06632929.1| DNA integration/recombination/inversion protein [Enterococcus
           faecalis S613]
 gi|312908543|ref|ZP_07767487.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis DAPTO 512]
 gi|312908987|ref|ZP_07767849.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis DAPTO 516]
 gi|256950866|gb|EEU67498.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
 gi|291078335|gb|EFE15699.1| DNA integration/recombination/inversion protein [Enterococcus
           faecalis R712]
 gi|291082196|gb|EFE19159.1| DNA integration/recombination/inversion protein [Enterococcus
           faecalis S613]
 gi|310625510|gb|EFQ08793.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis DAPTO 512]
 gi|311290687|gb|EFQ69243.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis DAPTO 516]
 gi|315169211|gb|EFU13228.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX1341]
          Length = 309

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 44/288 (15%), Positives = 91/288 (31%), Gaps = 44/288 (15%)

Query: 73  WLISEYRKSAHWGSL------AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
            L  EY   + W  L         S   +     ++   +     + +  +  +  +   
Sbjct: 9   QLFHEYF--SEWVELYKVGAIRDISLQKYYIAEQRLAELAPGLKVKHLDRQRYQQLLNDY 66

Query: 127 KHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV----ERPKRKTEGIRPWTKEDMQ 180
             T    + + F   ++     AV +  ++ NP   +    + P+ K        + ++Q
Sbjct: 67  ALTHERQTTMDFHHQLKGAILDAVDEGLISKNPTRKIVIKGKAPRPKKSKF--LNQFEVQ 124

Query: 181 QFKSFWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSIKTQKT--------- 229
                   G Q    +  LL   +GLR S++     +    +   I  +KT         
Sbjct: 125 ALLKELELGEQLNWDWFILLVVKTGLRFSEALALTPKDFDFSKQKITIEKTWNYKNPTGF 184

Query: 230 -----------GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKAT 278
                         I  +    F +L+   P  +  F      +  N+T  +   K    
Sbjct: 185 FQSTKNESSKRKVQIDWQTAMQFSQLIRNMPPMEPIFV---KGRVFNST-INSRLKVLCR 240

Query: 279 KAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
           +A +   + H +R   A++   AG +   +    G  ++    ETY  
Sbjct: 241 RAQIPVITVHSLRHTHASLLLFAGVSIASVATRLGHSSMTTTQETYLH 288


>gi|149198666|ref|ZP_01875710.1| Integron integrase [Lentisphaera araneosa HTCC2155]
 gi|149138381|gb|EDM26790.1| Integron integrase [Lentisphaera araneosa HTCC2155]
          Length = 425

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 47/293 (16%), Positives = 90/293 (30%), Gaps = 55/293 (18%)

Query: 82  AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA-IQFLTSM 140
                 +  +  ++ S+  + +                 S +   K   +S   Q   ++
Sbjct: 112 MRLQRKSYKTEQAYGSWVVRYLAFVKGEGLNGENVTRFISYLAVDKDVAASTQNQAFNAL 171

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200
              F++ + +E   ++  L   R  RK +    +T++++    S       P L    + 
Sbjct: 172 VYFFRYVLEKELGDLSQSL---RAVRKAKLPVVFTRDEVMALMSVME--GVPLLMVRLIY 226

Query: 201 YSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLL------------- 245
             GLR S++ R  ++ +       +I++ K      V L D  ++ L             
Sbjct: 227 GGGLRHSEAYRLRIKDVDTARMCLTIRSGKGDKDREVPLGDSLLEDLKNHLAQIRKLYDV 286

Query: 246 AMTPIGKETFFINNDKQKMNATQ-FSIWF------------------------------- 273
                    +  N  ++K         WF                               
Sbjct: 287 DRAEEVAGCYLPNALERKSVNKGKEWAWFWLFPASTLSIDPRADVLRRHHVAPGYLSNHY 346

Query: 274 KAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           K    KAG++KSA  H +R   AT   + G     L    G   V+  + YT 
Sbjct: 347 KNAIEKAGISKSATVHTLRHSFATHVLEDGYDIRTLQEIMGHNDVNTTQIYTH 399


>gi|323241055|gb|EGA25092.1| putative phage integrase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
          Length = 381

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 52/344 (15%), Positives = 114/344 (33%), Gaps = 36/344 (10%)

Query: 19  GKIIYYFR-KGHGRRIRLPYPHESTFIPAYMSALTGS-----------TPKREYINSPRK 66
           G+ I+ FR +   +  ++       F  A                     K++     +K
Sbjct: 9   GRKIWRFRYRFDNKSQKITLGEYPAFSLAEARLWREKCRSMVAHGINPAQKKQEEKLKQK 68

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVES 125
            PTT+K     +         +     +     ++ II   G  +  ++TT HI+  ++ 
Sbjct: 69  DPTTVKTFAKRWLT--DIVEKSNRDPRNITRVIEKDIIPIIGKLELEELTTAHIQVVLDR 126

Query: 126 RKHTPSSAIQFLT--SMRVLFKWAVRQEYVAINPCLSVE--RPKRKTEGIRPWTKEDMQQ 181
            K   S  +  LT   ++ +  +A+ +  +  NP  ++E     + T      T E++  
Sbjct: 127 IKQRGSDHVALLTRNVLKRMLAYAISRGIIFNNPAAAIEARYIAQATSRDVALTAEEIGI 186

Query: 182 FKSFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIIT 234
                   +   + +LA   L+   +R S+   A    +  N    +      K      
Sbjct: 187 LLRGIYTSNMNRRHKLALHLLIICMVRKSEMIEATWSEVNFNALEWRIPGERMKMDNPHI 246

Query: 235 VELPDGFMKL---LAMTPIGKETFFI--NNDKQKMNATQFSIWFKAKATKAGV-NKSAHG 288
           V L    + +   L          F   N+ ++ ++ T  +   +       V +   H 
Sbjct: 247 VPLSKQALAMFEELKFLAGDSPYVFPSRNDHRRPISKTTLNCAVR--TLDLNVRDFVIHD 304

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA--DRIR 330
            R+ ++T+  + G  +  +      K       Y +    ++ R
Sbjct: 305 FRRTASTLLHEQGYNSDWVEKCLAHKIGGVRGIYNRAEYLNQRR 348


>gi|301645407|ref|ZP_07245349.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 146-1]
 gi|301076312|gb|EFK91118.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 146-1]
          Length = 385

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 47/284 (16%), Positives = 100/284 (35%), Gaps = 25/284 (8%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           T++  +  +   +   + A N R  FE +   I    GD    ++ T          K  
Sbjct: 99  TVRQAVDFWLTDSETAA-ADNYRKQFEKH---IFPHLGDLPIDQLDTAAWLKVFSDIKRG 154

Query: 130 ------PSSAIQFLTSMRVLFKWAVRQEYVAI---NPCLSVERPKRKTEGIRPWTKEDMQ 180
                 P++A       +   K+   ++ +     N   + +      +  R   + ++ 
Sbjct: 155 TYHRAAPNAAAYVFGLTKTAMKYCRARQMITTTVLNDLSAGDVGATVNKRDRVLKQNELS 214

Query: 181 QFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT----QKTGTII 233
               + ++ + P   R   + L+  G R S+   + ++    +           KTG  I
Sbjct: 215 DAVEWSNDIANPFYYRALLKLLMVFGCRLSELRLSTIKEWDMDAMIWTAPKQHTKTGVEI 274

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKF 292
              +P   + +LA     +++  +  +K+       S +    + K G +  +AH +R+ 
Sbjct: 275 QRPIPAALVPVLASLINDRKSGLLLTEKK--TVGSVSNYIIGISRKLGHDSWTAHDIRRT 332

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKG--ADRIRLGIK 334
            AT  AD G   H + A  G      A  Y +    +  R  ++
Sbjct: 333 VATRLADMGIHHHVIEALLGHVLPGVAGIYNRSHLLNEKREALE 376


>gi|295698025|ref|YP_003602682.1| putative Integrase/recombinase [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295060137|gb|ADF64874.1| putative Integrase/recombinase [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 325

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/287 (13%), Positives = 90/287 (31%), Gaps = 35/287 (12%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK-----ITTKHIRSGVESRKHTPS 131
            Y  S +    +  SR +  S+ + +    G           +   H+ +  E  + T  
Sbjct: 36  AYLLSLN----SHRSRQTMASFLNIVAVMLGAASLESCSWGSLRRHHVMAVTELLRDTGR 91

Query: 132 SA---IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI----RPWTKEDMQQFKS 184
           +      +L++++ + K A     + +     +   +          R    E+++    
Sbjct: 92  ATATVNTYLSALKGVAKEAWMLRLMDVESFQHIRAVRNLRGSRLPRGRALPPEEIRALFG 151

Query: 185 FW-----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239
                  S G +       +L  GLR S++    +  +  +  +++    G    +    
Sbjct: 152 ACEADDSSIGVRDAAMLGVILGCGLRRSEAVGLDLCDIVTDERALRVLGKGNKERLAYMP 211

Query: 240 G-----FMKLLAMTPIGKETFFINNDKQ-------KMNATQFSIWFKAKATKAGV-NKSA 286
                   K +      K+       ++       ++         + +   AG+   + 
Sbjct: 212 AGTWQRLRKWIDDVRGEKDGPLFTRIRRFDTLTNDRLTDQTVYHVLQVRQRLAGIAKCAP 271

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETY-TKGADRIRLG 332
           H +R+  AT   D G     +    G  +V   + Y  +G  R+R  
Sbjct: 272 HDLRRTFATSMLDNGEDLITVKDAMGHASVTTTQQYDRRGEARLRTA 318


>gi|325679504|ref|ZP_08159084.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
 gi|324108791|gb|EGC03027.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
          Length = 351

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 47/331 (14%), Positives = 104/331 (31%), Gaps = 41/331 (12%)

Query: 41  STFIPAYMSALTGSTPKREYINSPRKKPT--TLKWLISEYRKSAHWGSLAVNSRISFESY 98
            +F     + +     + E     +  P   TL   ++EY  S     L+ +S   +E  
Sbjct: 25  KSFTAPTKAEVKLLAAEWENGIKKKAAPKDLTLDAAVAEYIASKENI-LSPSSIRGYEVI 83

Query: 99  FDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158
               +        R IT K ++  V +     + A     +++   ++ +    +  N  
Sbjct: 84  RKNALGDLAKMHIRNITEKDLQMWVNT-----NFARYKPKTIKS--QFGLVTATLRQNKV 136

Query: 159 LS----VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGV 214
                 V  P+ +    +  T++++ +  +   EG+   L     + +G+R S+      
Sbjct: 137 NLEFDTVRLPEIQKYEPKIPTEKEIAKILTIV-EGTSVELPVTIAVTTGMRQSEIAALKW 195

Query: 215 QHLQNNIFSIKTQKTGTI----------------ITVELPDGFMKLLAMTPIGKETFFIN 258
                    +   K                      +E+     + L       E     
Sbjct: 196 SDYDGTFLYVHAAKVPNRDNKYIIKDTTKSRASTRAIEVDAVLKQRLDRADRKGEYI--- 252

Query: 259 NDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD 317
                M  +     F+    K G+   + HG R  +A++    G      M   G  + +
Sbjct: 253 ---SPMLPSSVLRKFQQLCDKNGLPHFTMHGQRHGNASLMLAQGVPDKYAMERLGQSSPN 309

Query: 318 QAE-TYTKGADRIRLGIK--NSRRISSVVDS 345
             +  Y    D  +  +    S + S+++D+
Sbjct: 310 MIKNIYQHLYDEKKKEVSKTMSDKFSAILDT 340


>gi|228956231|ref|ZP_04118107.1| YdcL (Lambda integrase-like, N-terminal,DNA breaking-rejoining
           enzyme, catalytic core) [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228803440|gb|EEM50183.1| YdcL (Lambda integrase-like, N-terminal,DNA breaking-rejoining
           enzyme, catalytic core) [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|324328863|gb|ADY24123.1| YdcL [Bacillus thuringiensis serovar finitimus YBT-020]
          Length = 353

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 47/282 (16%), Positives = 93/282 (32%), Gaps = 30/282 (10%)

Query: 70  TLKWLISEYRK--SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR- 126
           T + +   Y    +      ++N+     + ++ ++++ G      IT +H+        
Sbjct: 57  TFEHVADSYFNWYTQRRKQSSINTIK--NAIYNHLMKEFGKMKIDCITPRHVMDYQNKMI 114

Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP-KRKTEGIRPWTKEDMQQFKS 184
            +++     +F T++  +F + ++   +  NP        K   + I  W  E+ +QF S
Sbjct: 115 NEYSAEYLKKFHTTLSAIFNFGIKFHGLTTNPARIAGNFQKESKKRINFWEFEEFKQFIS 174

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG------------TI 232
              E    +  F  L YSG R  +      + +     +I   KT             + 
Sbjct: 175 VVDEPMY-KAFFSTLYYSGARKGELLALTWEDINFEEKTINIHKTKYNRQVTEPKTKASN 233

Query: 233 ITVELPDGFMKLLA--------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284
             + LP+  M LL           P+  +          +  T     F      A V +
Sbjct: 234 RIIMLPNFVMNLLKSIKKDAALTAPVKNDYVVFGEFYDSLATTSLHKKFNNYLKIAMVKE 293

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
              H  R   A+   + G +   +    G   V     TY+ 
Sbjct: 294 IVMHEFRHSHASYLINKGVSPLVVAQRLGHSDVATTLNTYSH 335


>gi|170744442|ref|YP_001773097.1| integrase family protein [Methylobacterium sp. 4-46]
 gi|168198716|gb|ACA20663.1| integrase family protein [Methylobacterium sp. 4-46]
          Length = 509

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 59/369 (15%), Positives = 106/369 (28%), Gaps = 88/369 (23%)

Query: 44  IPAYMSALT-GSTPKREYINSPRKKPT--TLKWLISEYRKSAHWGSLAVNSRISFESYFD 100
               + A   G   +          P   T++ LI+ Y            +  ++++ F 
Sbjct: 116 WADALLARNKGEVVETPVPPKAASTPRSCTVEDLITAYLNDPT-RKRTPGTLKTYQTVFR 174

Query: 101 QIIRKSG-DFDYRKITTKHIRSGVESRKHTPSSA-------------------------- 133
            +    G D     I               P +A                          
Sbjct: 175 AMRELLGPDTPVDSIHRVDCERIRSVIIRLPKNASQRFPDLSLEDAAKLADAEKLERLGV 234

Query: 134 ---IQFLTSMRVLFKWAVRQEYVAINPCLSVERP--KRKTEGIRPWTKEDMQQF------ 182
                +L ++  LFKW V    V  NP   +  P  + + +  +P++   +Q        
Sbjct: 235 SAVNNYLHNLSALFKWGVNTWRVTRNPAQGLALPDDRDERDLRQPFSIAQLQAIFTAPLY 294

Query: 183 -------KSFWSEGS----QPRLAFEFL-LYSGLRCSDSCRAGVQHL------------- 217
                  + +   G     + R     L L++G+R  + C+  V+ +             
Sbjct: 295 TGCQDDEEGYAKPGPNVPRRGRFWVPLLSLWTGMRLGECCQLRVEDVAEYEGVPVILIND 354

Query: 218 ----QNNIFSIKTQKTGT-IITVELPDGFMKL------LAMTPIGKETFF--INNDKQKM 264
                 +    K  KT      V +     ++       AM   G++  F  I  D    
Sbjct: 355 DEEPGGDEADKKRVKTEAGRRFVPVHPELQRIGFLKFVEAMRGRGEKRLFPEIKPDSMGY 414

Query: 265 NATQFSIWFKAKAT------KAGVNKSAHGVRKFSATISADAGATAHELMATYGWK--TV 316
            +  FS WF  K         +G   S H  R        +A  +   + A  GW+  + 
Sbjct: 415 LSGTFSKWFNDKRRFLGKLDMSGTGVSFHSFRHNYRDALREAEISLERVRALGGWRRDSE 474

Query: 317 DQAETYTKG 325
            +   Y KG
Sbjct: 475 GEEAIYGKG 483


>gi|330994861|ref|ZP_08318783.1| Integrase [Gluconacetobacter sp. SXCC-1]
 gi|329758122|gb|EGG74644.1| Integrase [Gluconacetobacter sp. SXCC-1]
          Length = 301

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/260 (14%), Positives = 80/260 (30%), Gaps = 26/260 (10%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP-------------SS 132
            +  + R  + S   +   + G      ITT+ I   +  RK                +S
Sbjct: 11  GVKDSVRTRYLSSIRRFDERFGSLLVASITTRDIADWISDRKRMGSARTQGEGKAISNAS 70

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVER--PKRKTEGIRPWTKEDMQQFKSFWSEGS 190
             + LT++  L  +     +   NP  + +R   + + E  RP T++++Q        G 
Sbjct: 71  IQRDLTALSRLLSFCCSIGWRTDNPVQAFDRTIIRERREPKRPPTRKEIQTAIDAAPPGI 130

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNN--IFSIKTQKTGTIITVELPDG---FMKLL 245
                   L  +G+R +++       + +      +   KT    T+          ++L
Sbjct: 131 AG--ILTILAETGMRMNEAVMLERWQVDSKSRQVLLTKTKTSRPRTISWHTSGGNATRVL 188

Query: 246 AMTPIGKETFFINNDKQKM--NATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAG 301
                    +      +     ++  +   +       + +    H +R   A      G
Sbjct: 189 EEGAPSGFLYTSGTTGKPFANFSSNHAQVMRRIQRDNPLFRRFGVHDLRHAFAVRWLKEG 248

Query: 302 ATAHELMATYGWKTVDQAET 321
              + L    G  +V   E 
Sbjct: 249 GNIYRLSRHLGHSSVKVTEQ 268


>gi|317495918|ref|ZP_07954281.1| phage integrase [Gemella moribillum M424]
 gi|316914095|gb|EFV35578.1| phage integrase [Gemella moribillum M424]
          Length = 364

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/288 (13%), Positives = 98/288 (34%), Gaps = 36/288 (12%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
           I +Y++     +   N++  F+ +           D + +  +   + + ++K   S+  
Sbjct: 76  IEQYKRKVKDTTYYSNTKY-FKQHILPFFANIKIKDIKLVVCQKFINDL-AKKFKKSTIQ 133

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKR-KTEGIRPWTKEDMQQFKSFWSEGS--Q 191
           ++ T + ++  +A++ E ++ N     + P+  +      ++K ++ +F     +    +
Sbjct: 134 RYRTLVNLVLDYAIKLEIISTNYMKYTDIPRAIEKRKDNYYSKNELLEFLRLVKDNFSFE 193

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQN---------------NIFSIKTQKTGTIITVE 236
               F  L ++G+R  + C    + +                   + I   KT     V 
Sbjct: 194 IYCIFRVLAFTGVRRGELCALTWKDVDLKNKTLTVSKNMTFIKGGYRISETKTQASNRVI 253

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKA--------TKAGVNK-SAH 287
             D     +      + TF        ++ + F +                  + K S H
Sbjct: 254 YLDDETVNVLKQLRKESTFL------PIDTSIFDLTISRICYYSKLIHEKLPNLKKISVH 307

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIK 334
           G R   AT+  ++G    ++    G   +    + YT   +  +  + 
Sbjct: 308 GFRHTHATLLYESGVDIKDISNRLGHSNIKTTLDVYTHLTEDKKKDVT 355


>gi|254230274|ref|ZP_04923664.1| Site-specific recombinase XerD [Vibrio sp. Ex25]
 gi|151937211|gb|EDN56079.1| Site-specific recombinase XerD [Vibrio sp. Ex25]
          Length = 446

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 53/290 (18%), Positives = 95/290 (32%), Gaps = 28/290 (9%)

Query: 83  HWGSLAVNSRISF----ESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKH--TPSSAI 134
            W  L  N         +S  ++ ++  G  D     I    + + +       + S+  
Sbjct: 156 EWLELNRNRNKDTISKVKSTTERFLKHCGVFDLPLLSIERAAVVNFIHDLADECSVSTIR 215

Query: 135 QFLTSMRVLFKWAVRQEYVA--INPCLS---VERPKRKTEGIRPWTKEDMQQFKSFW--- 186
             L+ ++ ++K A     +    NP          KRK +  +     +  Q  + W   
Sbjct: 216 AHLSRLKTVYKHAWDMGRIKNKDNPFAEHSLAHLDKRKEKKPKQLFSREQLQILAKWADE 275

Query: 187 --SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTG-TIITVELPD 239
             S+GS   L F   L++G R  + C   V+ +  +       I+  KT     TV L D
Sbjct: 276 QTSKGSNMGLLFRLGLFTGSRIGELCNVKVKDVYTDSGITAIKIRVGKTSAAQRTVPLTD 335

Query: 240 GFMKLLAMTPIGK--ETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATIS 297
                +     GK  ET  +  +  K +       FK        ++  H +R   +T  
Sbjct: 336 SIASEVLQLIKGKTPETKLLGLNGDKASRD--FSRFKVANVSKDPSQCFHSLRVHVSTAM 393

Query: 298 ADAGATAHELMATYGWKTVD-QAETYTKGADRIRLGIKNSRRISSVVDSD 346
             AG   H      G +        Y    D ++   +   +   V+  D
Sbjct: 394 LRAGIQEHHSAFIVGHEGGKTMTYGYYAKGDELKTLKEYIDKAEEVIKRD 443


>gi|186474605|ref|YP_001863576.1| integrase family protein [Burkholderia phymatum STM815]
 gi|184198564|gb|ACC76526.1| integrase family protein [Burkholderia phymatum STM815]
          Length = 413

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 43/331 (12%), Positives = 103/331 (31%), Gaps = 36/331 (10%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEY 78
           G+    +R+  G   R      +     Y+  L      R  + +P       +  + +Y
Sbjct: 76  GRQGIRYRQIDGYWTRKQITCTARGWLRYLGCLD-----RPVVQNP------FQSYLDDY 124

Query: 79  RK-SAHWGSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVESRKHTPSS 132
            K + +   LA ++   +     + +R  G       + R        +    +     +
Sbjct: 125 CKWATNEQGLAESTVGLYARRITRFLRWYGPGGRSLSEVRVSDIDAYLAYERRQGWGRLT 184

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS-- 190
               + +MR  F++     +   +   +++ P+  +    P     +   + F S  S  
Sbjct: 185 IRSAVDAMRAFFRFGGVSHWCKPSFAAAIQGPRIYSLENLPAGPAWVDVSRVFASLNSTD 244

Query: 191 ----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDG---- 240
               + R     L   G+R S+  +  +  +    +   ++  K   +    L       
Sbjct: 245 PKDIRARAVLMLLSIYGMRASEVAKLRLDDIDWERDQLRVRRAKRRELQVYPLLPSVGKA 304

Query: 241 ----FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHG---VRKFS 293
                  +   +   +    + +  + ++A         +   A V+ + HG   +R   
Sbjct: 305 IVDYLQHVRPRSAHREVFLILMSPFRPLSAKGIYGVVSPRLKAADVHCAHHGPHALRHAC 364

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324
           A      G +  E+    G ++      YTK
Sbjct: 365 AARLVAQGLSLKEVGDHLGHRSTRATRIYTK 395


>gi|295397961|ref|ZP_06808017.1| possible integrase [Aerococcus viridans ATCC 11563]
 gi|294973719|gb|EFG49490.1| possible integrase [Aerococcus viridans ATCC 11563]
          Length = 356

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 43/275 (15%), Positives = 84/275 (30%), Gaps = 40/275 (14%)

Query: 91  SRISFESYFDQIIRK-------SGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL 143
           +    E YFD +I           D DY +++ +  R  ++  ++   +   +   +   
Sbjct: 49  TYHDIERYFDDLINHPSKTYILINDIDYDEVSEEQ-RRALDQFRYKDRTIKSYRNMLNQF 107

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGI--RPWTKEDMQQFKSFWS------EGSQPRLA 195
           FKW + +E +  N             G        ED+++   +         G +    
Sbjct: 108 FKW-LERENLYENIVARANNNIPVPHGHAKDALDIEDVEKLLDYLKSTTDTLIGKRNYAL 166

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFS---IKTQK----TGTIITVELPDGFMKLLAMT 248
               + +GLR  +  RA  + +Q    +       K        + +      +      
Sbjct: 167 ILLAVTTGLRTIELSRANFEDVQRRGLNTVIYVQGKGRREKDEFVIIPRKTKEVVRDYTR 226

Query: 249 PIGKETFFINND-------------KQKMNATQFSIWFKAKATKAGVNKS---AHGVRKF 292
               +   IN D               +M+A   S          G++ S    H +R  
Sbjct: 227 FREDQGIMINTDLAPLFASHGNRNKSGRMSARSISRVIANAYEAVGIHSSKITPHSLRHT 286

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           +AT+S   G    E        +V   E Y +  +
Sbjct: 287 AATLSLINGGNLRETQKLLRHSSVRTTEIYAQDLN 321


>gi|255012236|ref|ZP_05284362.1| integrase [Bacteroides fragilis 3_1_12]
 gi|313150077|ref|ZP_07812270.1| integrase [Bacteroides fragilis 3_1_12]
 gi|313138845|gb|EFR56204.1| integrase [Bacteroides fragilis 3_1_12]
          Length = 403

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/195 (17%), Positives = 66/195 (33%), Gaps = 15/195 (7%)

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WSEGSQPRLAF 196
           +R +   A +   +  +P  +       T+     T++++Q   S        +  R  F
Sbjct: 190 LRSIVTHAHKNGLIPRDPFAN-CYVSGGTKEREFLTEKEVQTLMSHRFDDPAMTVVRDIF 248

Query: 197 EFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDGFMKLLAM-TPIG 251
            F   +G+   D       +L     +   S   QKT     V+L +   K++    P  
Sbjct: 249 IFGCLTGISFIDIKNLTTDNLVTINGSLWISSVRQKTNIPFRVKLMESACKIIDRYEPFR 308

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMA 309
           +     N  +        ++  K  A + G+NK  + H  R   A ++   G     +  
Sbjct: 309 RGKRLFNFYRNGWT----NVLLKQIAAECGINKHLTFHMSRHSYAVMAISNGMPIESVSK 364

Query: 310 TYGWKTVDQAETYTK 324
             G   +   + Y K
Sbjct: 365 VLGHTKITTTQHYAK 379


>gi|169829609|ref|YP_001699767.1| tyrosine recombinase xerC-like protein [Lysinibacillus sphaericus
           C3-41]
 gi|168994097|gb|ACA41637.1| Tyrosine recombinase xerC-like protein [Lysinibacillus sphaericus
           C3-41]
          Length = 395

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 41/316 (12%), Positives = 99/316 (31%), Gaps = 43/316 (13%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITT----KHIRSGVE 124
           T+   +  + +S       + SR   E     Q+    G F  +++T     KH  + +E
Sbjct: 79  TVGQWLDIWYESNQ-KKWKITSRKQREMAIRLQMKPLIGHFKLQQLTKAIYQKHYINELE 137

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP----WTKEDMQ 180
              + PS+        ++    AV +E +  N    +   +      +      T E++ 
Sbjct: 138 K-TYKPSTVRLLHNLFKIAINAAVEEEILLRNRFTKIAFDEATNVSNKADENYLTPEELG 196

Query: 181 QFKSFWSE--GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ------------NNIFSIKT 226
            F     E            + Y+G+R  ++C    +++             +   +   
Sbjct: 197 LFLKTAKETENITNYTFLLLIAYTGIRRGEACGLQWKNIDFKNNTITIERTRDQKGTRTP 256

Query: 227 QKTGTIITVELPDGFMKLLAMTPI--------------GKETFFIN-NDKQKMNATQFSI 271
           +   ++ T+++    +  L                        F++    + ++ +    
Sbjct: 257 KTKNSLRTIKVEKSVLAQLEKYHTWCKATLFAFGKKIKDTSYVFVSYQTGEPISDSGLLY 316

Query: 272 WFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
             +    KA + + + HG+R    T+  + G     +    G       E Y        
Sbjct: 317 MTRRVIEKASLPEITLHGLRHTHCTVLLNKGVNVKVIAERLGNTPAMIYEVYGHVL--KE 374

Query: 331 LGIKNSRRISSVVDSD 346
           L  +  +  S  + ++
Sbjct: 375 LEEETVQIFSDSIGAN 390


>gi|187922254|ref|YP_001893896.1| integrase family protein [Burkholderia phytofirmans PsJN]
 gi|187713448|gb|ACD14672.1| integrase family protein [Burkholderia phytofirmans PsJN]
          Length = 333

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/237 (13%), Positives = 70/237 (29%), Gaps = 23/237 (9%)

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV---ERPKRKTEGIRPWTKEDMQQ 181
            R+ +  +    L ++R  F++   +E ++   C +V      K           +++  
Sbjct: 74  ERRTSIGTRNCRLAAIRSFFRFVADREPLSAMQCAAVLSIPTKKGPKPEPDYLDGDEVAA 133

Query: 182 FKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN---NIFSIKTQKTGTIIT 234
                     EG +       L  +G R  ++      +++        +  +     I 
Sbjct: 134 ILRRPDRSTPEGQRDHALLALLYNTGARIQEALDVCPSNIRLTAPAQVKLYGKGRKARIC 193

Query: 235 VELPDG---FMKLLAMTPIG-KETFFINNDKQKMNATQFSIWFKAKATKAGVN------- 283
              P+       LL   P    E  F+N     ++A             A  +       
Sbjct: 194 PLWPETAALLKALLERQPRPYNEPLFVNRYGGPLSAAGARFKLAQYVRAAAYDSPSLRKK 253

Query: 284 -KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIRLGIKNSRR 338
               H  R  +      AG     +   +G  ++D    Y +   +  RL ++   R
Sbjct: 254 RVHPHTFRHTAGVQMIAAGVDVTVIRNWFGHVSLDTTNHYARANIETKRLALEQVDR 310


>gi|147671754|ref|YP_001215915.1| integrase [Vibrio cholerae O395]
 gi|262167833|ref|ZP_06035534.1| integrase [Vibrio cholerae RC27]
 gi|146314137|gb|ABQ18677.1| integrase [Vibrio cholerae O395]
 gi|227014823|gb|ACP11032.1| integrase [Vibrio cholerae O395]
 gi|262023741|gb|EEY42441.1| integrase [Vibrio cholerae RC27]
          Length = 343

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 44/322 (13%), Positives = 95/322 (29%), Gaps = 32/322 (9%)

Query: 24  YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAH 83
           Y +   G+R+R  +        AY + +      + ++ S       L  ++  +     
Sbjct: 19  YPQGREGKRVRKRF-ATKGEATAYENFIMREVDDKPWMGSKPDNRR-LSDIVELWYSHYG 76

Query: 84  WGSLAVNSRISFESYF-----DQIIRKSGDFDYRKITTKHIRS-------GVESRKHTPS 131
              +  +  I    +      + I        Y    ++ +              K + S
Sbjct: 77  RTLVNGDVIIQKFHHMVNAMGNPIAATFSAKTYSDFRSRRMSGELIFVDGRWNRGKPSIS 136

Query: 132 SAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG- 189
           +    L   + +F        + A NP   V+  +     +   T E ++      ++  
Sbjct: 137 TMNSELARFKAVFNKLKELGEWNAPNPLDDVKPFRESEREMSFLTTEQIKLLLELVAQHE 196

Query: 190 -SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248
            +      +  L +G R +++ +     L     +    KT    TV +     + +   
Sbjct: 197 IADMLKIVKICLSTGARWNEAAKLRGSQLSEYKITYTNTKTKKNRTVPISRELYEEIY-K 255

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV----NKSAHGVRKFSATISADAGATA 304
           P     F       +   T F    K    K G+     +++H +R   A+     G   
Sbjct: 256 PTSGRLF-------EECYTPFCYILK---NKLGITLPSGQASHVLRHTFASHFMMNGGNI 305

Query: 305 HELMATYGWKTVDQAETYTKGA 326
             L    G   +     Y+  A
Sbjct: 306 LVLRDVLGHADISMTMRYSHFA 327


>gi|295689965|ref|YP_003593658.1| integrase family protein [Caulobacter segnis ATCC 21756]
 gi|295431868|gb|ADG11040.1| integrase family protein [Caulobacter segnis ATCC 21756]
          Length = 418

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 49/303 (16%), Positives = 101/303 (33%), Gaps = 28/303 (9%)

Query: 44  IPAYMSALTGSTP--KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFES-YFD 100
           + A  +   G +P  +R    + ++   T       + + A    +A ++R    S Y  
Sbjct: 70  MEARKAVRDGQSPMIERRRAKAAQRDCGTFGEWAERWFEKAT---MAQSTRDMRRSIYLR 126

Query: 101 QIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158
            + +   +    +I    IR   E+   +  P++AI     ++ ++ +A        NP 
Sbjct: 127 DVAKVFQNRRLHEIEAMDIRLACEAIVARGAPATAIHVRELVKQVYAFARLHGAKVDNPA 186

Query: 159 LSVERPKRKT--EGIRPWTKEDMQQFKSFW---SEGSQPRLAFEFLLYSGLRCSDSCRAG 213
             V            R  T ++++ F S           RL  + +L + +R S+   A 
Sbjct: 187 TDVSPSSIAKFQPRERSLTPKEIRIFYSLLEMVPTLPTIRLGMKLILLTLVRKSELVFAT 246

Query: 214 VQHLQ----NNIFSIKTQKTGTIITVELPDGFMKLLAMTPI--GKETFFINNDK---QKM 264
              +              K G    V L    + +L       G   + + +     Q M
Sbjct: 247 WDEVDFVNAIWCIPAARMKCGRPHNVYLSRQALDILIALRTCAGNSPYILPSRYEADQPM 306

Query: 265 NATQFSIWFKAKATKAGVNK------SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           +   F+    A A +A  N+      + H +R+  +T+  + G  A  +           
Sbjct: 307 SRATFNRVTTAIAERAEENQQALAPFTVHDLRRTGSTLLNEVGFEADWIEKCLAHVDRRT 366

Query: 319 AET 321
           +  
Sbjct: 367 SRR 369


>gi|197336531|ref|YP_002157554.1| phage integrase, putative [Vibrio fischeri MJ11]
 gi|197315234|gb|ACH64682.1| phage integrase, putative [Vibrio fischeri MJ11]
          Length = 323

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 45/291 (15%), Positives = 93/291 (31%), Gaps = 36/291 (12%)

Query: 84  WGSLAVNSRISFESYFDQIIR-----KSGDFDYRKITTKHIR---SGVESRKHTPSSAIQ 135
           +   A +SR + E   +   +           + K+   HI    + +E      +    
Sbjct: 29  YTLRAESSRKTMEYTLNGFAKVLNVSNHKLIPWEKLNDFHIAMALNKLEKNGLKDTRLNT 88

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSV----ERPKRKTEGIRPWTKEDM-QQFKSFWSEGS 190
           +LT+++    +A     ++ +    +     R  R     RP    +M + F +      
Sbjct: 89  YLTAIKRSATFANGMGRLSTDVLFRINQIQPRKGRVVSKARPLKPFEMTELFITNSPSLR 148

Query: 191 QPR--LAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKT-QKTGTIITVEL----PDGF 241
             R    F  L+  GLRCS+     +  L  +++   ++   K      V +        
Sbjct: 149 DIRNNAIFALLVGCGLRCSELMTLQIDALVYKDDQHWVRFFGKGHVERCVPINDSTLPYL 208

Query: 242 MKLLAMTPIGKET----FFINNDKQKMN------ATQFSIWFKAKATKAGVN--KSAHGV 289
            + + +    K T    F                 +      +++    G     S H +
Sbjct: 209 EEWVQIRKELKLTSTTLFIRTRRGNTFVDHPIKARSSIYRLVQSRCLALGAKFMVSPHDL 268

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
           R+ +ATI   AG     +    G       + Y +  +  +L I   + +S
Sbjct: 269 RRTTATILYHAGVRISVIQDILGHADEKTTQRYIQKDE--KLLIDAIKNVS 317


>gi|298248766|ref|ZP_06972571.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
 gi|297551425|gb|EFH85291.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
          Length = 348

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 47/298 (15%), Positives = 98/298 (32%), Gaps = 51/298 (17%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI--TTKHIRSGVESRKHTPSS--- 132
           + +      LA N+  ++    ++ +          I  T +H+   V      P+    
Sbjct: 21  WLQIQANLGLAPNTIEAYARALEEYLALCIRTKVAAISATKEHVSWYVHDLMTRPNPRGE 80

Query: 133 -----------AI----QFLTSMRVLFKWAVRQEYVAINPCLS-------VERPKRKTEG 170
                      A     Q LT++R+ + + + +     NP          +   K++   
Sbjct: 81  KITTLDSGVGLANATLHQRLTAIRLWYDYLIEEGIRDANPVGRGRYTPGKIVYGKQERGL 140

Query: 171 IR-----PWTKEDMQ---QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NN 220
           I      PW  ++ Q     ++   E  + R+       + LR  + C      +     
Sbjct: 141 IPRLSKLPWIPDEEQWKGIIEAARQEPVRNRVMLALAYDAALRREELCSLLTSDIDPAQR 200

Query: 221 IFSIKTQKTGTIITVELPD---------GFMKLLAMTPIGKETFFIN----NDKQKMNAT 267
           + +I+ + T       +P           ++K   +    +   F++    N  Q +   
Sbjct: 201 LLTIRAETTKNRRARVVPYTEATAQLYINYLKERRVLSRARGPLFLSDSNRNRTQPITIW 260

Query: 268 QFSIWFKAKATKAG-VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            +S   K  A ++G +  S H  R    T  A +G   HE+    G ++V+    Y  
Sbjct: 261 TWSKVIKGIAERSGVIQLSTHTFRHLRLTDLARSGWDIHEIATFAGHRSVESTLQYIH 318


>gi|269956368|ref|YP_003326157.1| integrase family protein [Xylanimonas cellulosilytica DSM 15894]
 gi|269305049|gb|ACZ30599.1| integrase family protein [Xylanimonas cellulosilytica DSM 15894]
          Length = 422

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 57/377 (15%), Positives = 112/377 (29%), Gaps = 51/377 (13%)

Query: 20  KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYR 79
           ++ Y    G  R++R     ++  +      L  +  +           +    L+  + 
Sbjct: 27  RVRYRDFSGKTRQVRATGKSKAEALRLLRKRLADNDLRTSGTPGGLTADSLFGDLVDAWL 86

Query: 80  KSAHWGS-LAVNSRISFES-YFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS-AIQF 136
           +       LA ++R  +E      ++        R+IT + +   ++  +    + A + 
Sbjct: 87  QHLDATDRLAKSTRYRYERDMLTHVLPAFEHLALREITVRRVDQLLQQLQRRSYNRAQKA 146

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK---SFWSEGS--- 190
              + + FK AVR E +  NP    E   R  +  R    E +Q  +   + W  G    
Sbjct: 147 RVVLSLAFKLAVRWEVLDRNPVRDAEPLVRPVKVARALNVETVQLIRDLVADWEAGRAGK 206

Query: 191 -------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
                  Q     E +L +  R  +        L         +  GTI++V     F +
Sbjct: 207 PGPKPDGQILAVIEAMLGTSARIGEVLALRRCDLDLTGKRPTVRIAGTIVSVNGAPTFRQ 266

Query: 244 LLAMTPIGKETF--------------------------FINNDKQKMNATQFSIWFKAK- 276
               T   + T                           F   +   M    +    +   
Sbjct: 267 DHPKTSRSRRTISVPTFTVRALQSRLARIGDVEPEHLVFFTRNGTPMTTNNYRRALRRVL 326

Query: 277 --ATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGI 333
             +  AGV  + H  R+  AT    A           G  T +     Y +  + +    
Sbjct: 327 DGSEAAGV--TPHAFRRTVATTVDRA-VGIDLAAELLGHTTTEITRVHYIEPNEYVNPAT 383

Query: 334 KNS--RRISSVVDSDDP 348
            +   + +     +DDP
Sbjct: 384 ADILQKALGPEAKADDP 400


>gi|259503342|ref|ZP_05746244.1| conserved hypothetical protein [Lactobacillus antri DSM 16041]
 gi|259168713|gb|EEW53208.1| conserved hypothetical protein [Lactobacillus antri DSM 16041]
          Length = 215

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/194 (18%), Positives = 60/194 (30%), Gaps = 19/194 (9%)

Query: 148 VRQEYVAINPCLS-VE-RPKRKTEGIRPWTKEDMQQFKSFWSEGSQP------RLAFEFL 199
            ++EY+  N     V+ R K   E ++  T  +  Q ++     S+P       L     
Sbjct: 4   KKREYIPKNKTNGQVKGRRKIWVENVKFLTLAEYDQLRATIKAASRPELVNRNLLMIAIA 63

Query: 200 LYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPDGFMKLLAMT-----PIGKE 253
           L +GLR SD     V H+ N     +  QKTG   T+   +   +++            +
Sbjct: 64  LNNGLRASDVVTLRVGHVLNKTKTRVIEQKTGKAKTLFWNNCLAEIINYLNDLDYHDEND 123

Query: 254 TFFINNDKQKMNATQFSIWFKAKATK-----AGVNKSAHGVRKFSATISADAGATAHELM 308
             F  N     +   F    +  A K            H  RK         G     + 
Sbjct: 124 YLFPGNQDGHFSVHGFYEMLQRMARKTDNPQLAAKLGTHSFRKTFGRQLYKKGVNVEIIS 183

Query: 309 ATYGWKTVDQAETY 322
             +   +      Y
Sbjct: 184 QLFNHSSERNTRHY 197


>gi|213962954|ref|ZP_03391213.1| integrase [Capnocytophaga sputigena Capno]
 gi|213954295|gb|EEB65618.1| integrase [Capnocytophaga sputigena Capno]
          Length = 411

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/281 (13%), Positives = 88/281 (31%), Gaps = 34/281 (12%)

Query: 90  NSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS---- 139
           ++   +E+ +  +           D  ++++T   I       K   S     +      
Sbjct: 136 STLNKYENVYTHLSEFIQYKYRRSDISFKELTEDFINDFDFYLKINKSLTHNTIWVYMMP 195

Query: 140 MRVLFKWAVRQEYVAINPCLS-VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEF 198
           +  + + A+ +  +  NP  + +   + K  G     +E+++    +  + +   L  + 
Sbjct: 196 LCKMVEIAIDKGIIYRNPFKNYISSMEEKDRGY--LLREEVETLLQYHPKSASAELVRDL 253

Query: 199 LLY---SGLRCSDSCRAGVQHL-----QNNIFSIKTQKTGTIITVELPDGFMKLLAM--T 248
            ++   +G    D  +    HL      N     + QK+     V L D   K++     
Sbjct: 254 FVFSCFTGFSYIDIKQLKKSHLQSFFDGNKWLIKRRQKSDVPCNVRLLDIAEKIIEKYEG 313

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV----NKSAHGVRKFSATISADAGATA 304
               E  F        + T  ++  +       +      S H  R    T+    G   
Sbjct: 314 TTRTEALFPT-----PSNTNCNLLIRKMMKDCNIIREKPISFHWARHTFGTLFLTEGVPL 368

Query: 305 HELMATYGWKTVDQAETYTKGADRI--RLGIKNSRRISSVV 343
             +    G K +   + Y K  +    +     + R+ ++ 
Sbjct: 369 ESVSKMMGHKNIKTTQIYAKITNEKISKDMEIAAERLKNLK 409


>gi|209544889|ref|YP_002277118.1| integrase family protein [Gluconacetobacter diazotrophicus PAl 5]
 gi|209532566|gb|ACI52503.1| integrase family protein [Gluconacetobacter diazotrophicus PAl 5]
          Length = 452

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 49/351 (13%), Positives = 96/351 (27%), Gaps = 46/351 (13%)

Query: 21  IIYYFRKGHGRR--IRLPYPHESTFIPAYMSALTGSTPKREYINSPR---KKPTTLKWLI 75
           ++ Y   G  RR  I L     +           G   + +     R    K  T+K L 
Sbjct: 42  VLQYRALGRSRRYTIGLHGVWTAESARQEAKVQLGRVAQGDNPAEERQLDHKAITVKELC 101

Query: 76  SEYRKSAHW--------GSLAVNSR-ISFESYFDQIIRKSGDFDYRKITTKHIRSGV-ES 125
           + Y K  +              ++           II   G    + +T   I   + + 
Sbjct: 102 ALYLKDLNAGLILGKGGRPKKPHTIVTDIGRINRHIIPLLGTRRVKDLTKADINKALKDI 161

Query: 126 RKHT-------------------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
                                    +A + +     +  +AV    +  NP   + +PK 
Sbjct: 162 MAGKTAVSIKTSKLRGKAIVTGGAGTATRTIGLFGGILTYAVEAGIITTNPAHGLRKPKD 221

Query: 167 KTEGIRPWTKED-------MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGV--QHL 217
                R  T+ +       + +        +   +  +  L +G R S+           
Sbjct: 222 NVRTRR-LTEAEYRTLGLMLTKAGEDEKYATTVEIIRQIAL-TGCRRSEVIGLKWVEADT 279

Query: 218 QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKA 277
           + +   +   K GT +          L A       T+      +      F   ++   
Sbjct: 280 EGSCLRLIDSKEGTSVRPVGLPVVEFLEAKREAASGTYVFPGYGEDNAFGGFPNHWEQIF 339

Query: 278 TKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
             + + + + H +R   A++  D G T   + A  G         Y    D
Sbjct: 340 KDSPLSDVTPHVLRHSFASVGNDLGFTEVTIAALVGHSKGSVTSKYIHALD 390


>gi|319939540|ref|ZP_08013900.1| integrase [Streptococcus anginosus 1_2_62CV]
 gi|319811526|gb|EFW07821.1| integrase [Streptococcus anginosus 1_2_62CV]
          Length = 381

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 50/328 (15%), Positives = 104/328 (31%), Gaps = 47/328 (14%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD 110
           L GST K+E          T + L   +  S          R +    ++ +I   G   
Sbjct: 56  LNGSTVKKEMQVR------TYQELADLWLSSYQLTVKPQTFRATQRMLYNHLIPAFGTMK 109

Query: 111 YRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV---ERPKRK 167
             KIT  +I+  +              +  R + ++ V  + +  NP   V   +  KR+
Sbjct: 110 LNKITVYYIQDFINDLSKELVHYSVVHSINRRVLQYGVSLQLLPFNPARDVILPKVLKRE 169

Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPR-------LAFEFLLYSGLRCSDSCRAGVQHLQ-- 218
            + I+    E+++    +    S  +       + +  LL +G R  +        +   
Sbjct: 170 NKVIKFIAPENIKALMDYMESLSNQKYGYYLDYVLYSVLLATGCRFGEVVALEWSDIDLK 229

Query: 219 NNIFSIKT-------------QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN 265
               SI                K G  + + +    + +L +    +   F+  D Q   
Sbjct: 230 EKTISITKNYNRLLKLIGTPKSKAGVRV-ISIDKKTVNMLRLYKNRQRQLFLEVDSQAPA 288

Query: 266 A------TQFSIWFKAK----ATKAGVNK---SAHGVRKFSATISADAGATAHELMATYG 312
                   ++      +         +N    + H  R   A++  +AG +  EL    G
Sbjct: 289 VVFATPTKEYQNMATRQESLDRRLKEINCPRFTFHAFRHTHASLLLNAGISYKELQYRLG 348

Query: 313 WKTVDQA-ETYTK-GADRIRLGIKNSRR 338
             T+    + Y+    D+ +  +    +
Sbjct: 349 HATLATTMDIYSHLSKDKEKEAVSYYEK 376


>gi|298387853|ref|ZP_06997403.1| tyrosine site-specific recombinase [Bacteroides sp. 1_1_14]
 gi|298259458|gb|EFI02332.1| tyrosine site-specific recombinase [Bacteroides sp. 1_1_14]
          Length = 315

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 52/298 (17%), Positives = 103/298 (34%), Gaps = 37/298 (12%)

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIR--KSGDFDYRKITT---KHIRSGVESRKHTPSSA 133
           R+S ++G     +   + S    I+   +SG+  +RK+T    K   + +  R  + ++ 
Sbjct: 16  RESGNYG-----TAHIYRSSMSAILAFNESGNLPFRKVTPEFLKSFEAYLRGRNCSWNTV 70

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI--RPWTKEDMQQFKSFWS---- 187
             ++ ++R ++  AV +      P          T     R   KEDM++          
Sbjct: 71  STYMRTLRAVYNRAVDRRIAPYVP-HHFRYVYTGTRADKKRALEKEDMERLMKDIPKQLH 129

Query: 188 ----EGSQPRLAFEFL-LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
               E  + R  F  + L  G+   D        +  N+ + + +KTG ++TV L    +
Sbjct: 130 SGNRELQRARGFFILMFLLRGMPFVDLAYLKKHDIDGNVLTYRRRKTGRMLTVTLLPEAV 189

Query: 243 KLLAM---TPIGKETFFINNDKQKMNATQF------------SIWFKAKATKAGVNKSAH 287
           KL+     T       F     ++     +             +    +      + S++
Sbjct: 190 KLIKQHMNTDPASPYLFSLISSKEGTEEAYKEYQLALRNFNYQLMILKQVLGLTTDLSSY 249

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345
             R   AT++         +    G  ++   ETY K     ++   N    SS   S
Sbjct: 250 TARHTWATMAYYCEVHPGVISEAMGHSSITVTETYLKPFKNKKIDEANVMVFSSFRKS 307


>gi|291550115|emb|CBL26377.1| Site-specific recombinase XerD [Ruminococcus torques L2-14]
          Length = 374

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 41/317 (12%), Positives = 102/317 (32%), Gaps = 46/317 (14%)

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG-DFDYRKITTKHIRSGV 123
           + K  ++  L+  Y  S    ++ +++        + +I   G + +  +++  +I+  +
Sbjct: 62  KPKNISMSKLVELYLISQK-QTVKLSTYNRNCHSCNTLIAIIGAETNVNRLSAAYIQKQL 120

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF- 182
                 P +  + L  ++ L +W  + + +       + + +R  +       ED  +F 
Sbjct: 121 LDTGKEPGTLNEHLVRLKALLRWGYKHDLIQS--LDFLNKLERFKDVPHRVKIED--KFI 176

Query: 183 ----KSFWSEGSQPRLAFEF---LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------ 229
                +    G +     +    L  SGLR  ++       +      I   K       
Sbjct: 177 ESSDLALLISGMKVDTWIDLTKFLALSGLRFGEAAALLFDDVDIKNRVIHVTKNYDYINH 236

Query: 230 --------GTIITVELPDGFMKLLAMTPIGKET------------FFINNDKQKMNATQF 269
                    ++  V + D    L                       F +++ + +    +
Sbjct: 237 VTTSPKTLTSLRDVYMQDELAVLCRKLKAASFATFAMQDMNAQKLLFCDSNGEHIKYYAY 296

Query: 270 SIWFKAKATK-AGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYT---- 323
           + +F+    +  G   + H +R   A++  + G     +    G        E Y     
Sbjct: 297 NKYFRENTLRVLGKAYTVHSLRHTHASLLLEQGVDVDSISRRLGHSDSAVTREIYLHITK 356

Query: 324 KGADRIRLGIKNSRRIS 340
           K  ++  L IK  + I+
Sbjct: 357 KKQNQENLKIKELKLIA 373


>gi|260437606|ref|ZP_05791422.1| putative DNA integration/recombination/invertion protein
           [Butyrivibrio crossotus DSM 2876]
 gi|292809959|gb|EFF69164.1| putative DNA integration/recombination/invertion protein
           [Butyrivibrio crossotus DSM 2876]
          Length = 464

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 62/413 (15%), Positives = 104/413 (25%), Gaps = 99/413 (23%)

Query: 24  YFRKGHGR-----RIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL------- 71
           Y RK         R+      E      Y +       KR+     ++   T        
Sbjct: 3   YIRKRKKSYSVVYRVNDADGTEHQKSEGYTTL--KEAEKRKKEIEYKQSLGTFVVPKCTK 60

Query: 72  -KWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHT 129
            K LI EY +        V +        +  II   G+    +I    +          
Sbjct: 61  VKELIKEYVRIYGHNEWGVATYDGNVGLINNYIIPTIGEVQLSEINNHFMEKYYTDLLKM 120

Query: 130 PS----------------SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
           P+                +  Q    +R  F+ AV+ + +  NP      PK K E    
Sbjct: 121 PAVKSSRNPDGDKLITAATVHQIHKVLRSCFRQAVKWDMMDRNPATDATLPKYKAEEREI 180

Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI--------- 224
           WT E + Q      E    ++AF     + +R  +        +  +  +I         
Sbjct: 181 WTAEMLMQAIDAC-ENKWLKVAFHLAFAATVRIGELLGLTWDCVDISEEAISENRAYVFI 239

Query: 225 -------------------------KTQKTGTIIT-------------VELP-------- 238
                                      +K    +              V +P        
Sbjct: 240 NKQVERVSKEAVEELDSKEVILIFPSQRKNNKTVRVLKTPKTDTSERKVYIPGFVAQCLI 299

Query: 239 ------DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRK 291
                 D   + L                  +N +      +    K G+ +   H +R 
Sbjct: 300 DIKKEQDEVKEALGSEYTDYNLIMATTFGMPINGSYIRDQMQKVIDKEGLPDVVFHSLRH 359

Query: 292 FSATI-SADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSV 342
            S T     +G     +    G    D   E Y    D  R   KN+ R+ + 
Sbjct: 360 TSVTYKLKLSGGDIKAVQGDSGHAQADMVTEVYGHIIDEDRR--KNAERMENA 410


>gi|154488041|ref|ZP_02029158.1| hypothetical protein BIFADO_01611 [Bifidobacterium adolescentis
           L2-32]
 gi|154083514|gb|EDN82559.1| hypothetical protein BIFADO_01611 [Bifidobacterium adolescentis
           L2-32]
          Length = 237

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/232 (14%), Positives = 69/232 (29%), Gaps = 12/232 (5%)

Query: 110 DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
           D R +    + +   ++   P +      +    F+W         +P   +   KR   
Sbjct: 11  DPRDVEGDDLLAHFAAKDWKPETRKGAKNACVSYFRWLKASGRSEADPSEFLPTVKRP-- 68

Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN---NIFSIKT 226
              P    D+    +        RL        GLR  +  +   + +         +  
Sbjct: 69  EPHPRPCPDVVILAALRKATDGERLMLRLGAECGLRRFEIAKVHSRDVMRDLVGWSLVVV 128

Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA 286
            K      V + D    L+          F       + ++      +  +   G   +A
Sbjct: 129 GKGDKQRIVPIGDDLALLIR---SANGYLFPGRWSGHVESSYVG---RHLSDLLGDGWTA 182

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIRLGIKNSR 337
           H +R   AT +  A      +    G  +V+  + Y     DR+R  ++ +R
Sbjct: 183 HSLRHRYATTTYAATRDLLLVSKLLGHASVETTQRYIAMPDDRLRAAVEATR 234


>gi|325674344|ref|ZP_08154033.1| phage integrase [Rhodococcus equi ATCC 33707]
 gi|325555024|gb|EGD24697.1| phage integrase [Rhodococcus equi ATCC 33707]
          Length = 405

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 50/366 (13%), Positives = 127/366 (34%), Gaps = 36/366 (9%)

Query: 11  VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
           V  ER   GK      + +GRR+   +  +         A T +        +   +  T
Sbjct: 27  VRTERWGQGKRWLARWEENGRRVSKAFDGKDA--ADTFIARTVTEQADGTYIAKANREVT 84

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV------- 123
           +  +   +  +      + + R  +++ +  I  + GD    +I+   + + +       
Sbjct: 85  VAEVWPTWWSTKAAK--SKSLRDGYQAAWKHIEPRWGDVACAEISRHAVAAWLPTITGRY 142

Query: 124 -----ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
                 S     SS  + +  +  + + AV +  +  NP    + P+++    R  +  +
Sbjct: 143 TDEEGNSLPLGESSLRKVMIVLHGVLETAVEERIILSNPVKMKDAPRQRETTRRYLSVVE 202

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ----------- 227
           + + +      +  +L  + L+++G+R  ++    V  L       +             
Sbjct: 203 VDRLREAMP-HTSAQLVVDVLVHTGVRPGEAFGFQVGDLDPIRGRCRVSRDVDAKGGADD 261

Query: 228 -KTGTIITVELPDGFMKLLAMTPIGKET---FFINNDKQKMNATQFSIWFKAKATKAGVN 283
            KTG    V +    +  L     G +         D +     ++   ++    KAG++
Sbjct: 262 TKTGRHRDVPVGGDLLLDLENEAEGCDRGEWLLRMPDGRGWTLPRWRPIWEKAIEKAGLD 321

Query: 284 -KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISS 341
               + +R  +A+++  +GA    +    G ++     + Y    D     +   +R+S 
Sbjct: 322 DLDTYELRHTAASLAIHSGANVKTVQRMLGHRSAAMTLDIYGHLWDEELDALP--KRMSE 379

Query: 342 VVDSDD 347
            + ++ 
Sbjct: 380 HMKAER 385


>gi|307566421|ref|ZP_07628857.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
 gi|307344873|gb|EFN90274.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
          Length = 375

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/256 (13%), Positives = 83/256 (32%), Gaps = 28/256 (10%)

Query: 89  VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES-------RKHTPSSAIQFLTSMR 141
            ++R +  ++ ++   K  D  + +++   I    +        ++ +   A   + ++ 
Sbjct: 104 HSTRSNLRTFIEE-KYKVKDLAFSQLSENFIYDFRDYFLGTLGFQESSFYGAASQIKTV- 161

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ-----QFKSFWSEGSQPRLAF 196
              + A R+         + +  +   +  +   +  +      QF     E    R  F
Sbjct: 162 --CRLAYREGLADTLLFANAKIARGDKKLPKALDRCSLDKLMNIQFGELEEEMETARDLF 219

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251
            F  ++G    D        L  +           QKTG +  ++L    ++++      
Sbjct: 220 VFACHTGAAYCDLMELSRLQLVRDDEGSLWLKFNRQKTGVLCRIKLLPEAIRIIEKYKSD 279

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS-ADAGATAHELM 308
           +    +     +M    +  + KA   +A +    + H  R   AT+   + G     + 
Sbjct: 280 ERESLL----PQMKYATYQSYLKALRLRASIAFPFTTHTARHTFATLITLEQGVPIETVS 335

Query: 309 ATYGWKTVDQAETYTK 324
              G   V   E Y K
Sbjct: 336 KMLGHSNVSMTERYAK 351


>gi|294624933|ref|ZP_06703587.1| shufflon-specific recombinase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292600770|gb|EFF44853.1| shufflon-specific recombinase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 360

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 50/348 (14%), Positives = 107/348 (30%), Gaps = 40/348 (11%)

Query: 13  KERTRHGKIIYY--FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
            + T+ G + +    R          + +       +  AL        +++    + TT
Sbjct: 2   AQITKRGDLQWRARVRIKGFPEQSRTFTYRED-AEKWARALERELETSGFVDRREAEKTT 60

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KH 128
           L+ ++  Y+        +            +            +T+K I +  + R  + 
Sbjct: 61  LRQVLERYKLEVTPAKKSAAIEEVKIDVILK-DATLPGLKMAAVTSKEIAAWRDRRLKQV 119

Query: 129 TPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           T  +  + +  +  +F  A R+      NP   V RP++     R  + E+ +   +   
Sbjct: 120 TGGTVNREIDVLSTVFNHAKREWGINVENPIPHVRRPEKAKARDRRLSAEEERYLFAALE 179

Query: 188 EGSQ---------PRLAFE-----FLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGT 231
           EG +          R  +        + + +R  +      +H+        +   K G 
Sbjct: 180 EGERRADGTLGSGARNPWLGPLVKLAIETAMRRGELLALRWEHVDLKRRTAHLPDTKNGD 239

Query: 232 IITVELPDGFMKLLA-----------------MTPIGKETFFINNDKQKMNATQFSIWFK 274
             TV L    + LL                     + K  +      + + A   +   K
Sbjct: 240 PRTVPLSTTAVALLKTLHEKREEGTENVFPITAAALQKGFWRATERAKALYADDCATAGK 299

Query: 275 AKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
             A    ++   H  R  +A+  AD  +   EL A  G + +   + Y
Sbjct: 300 KPAKGFLMDVHFHDTRHEAASRLADKLSNVLELSAVTGHRDLRMLKRY 347


>gi|294505690|ref|YP_003569751.1| Tyrosine recombinase xerD [Salinibacter ruber M8]
 gi|294342129|emb|CBH22793.1| Tyrosine recombinase xerD [Salinibacter ruber M8]
          Length = 191

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/179 (14%), Positives = 58/179 (32%), Gaps = 17/179 (9%)

Query: 166 RKTEGIRPWTKEDMQQFKS----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--N 219
           R  +  +  T+ +  +  +     +    +  L    +L +GLR S++     +H+   +
Sbjct: 3   RPDKLPKILTEAETDRLLAQPNQRYFGPHRDYLYMRAMLKAGLRASEATALRPEHIDLMS 62

Query: 220 NIFSIKTQKTGTIITVELPDGFMKLL-------AMTPIGKETFFINNDKQKMNATQFSIW 272
               ++  K     T+ + +  ++ L         T  G +     +   ++  +     
Sbjct: 63  GKLMVREGKGAKDRTLWIGEELLEELQAWMDRRKATAPGADYLLPTSKSTQVATSHLRRS 122

Query: 273 FKAKATKAGVNK----SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
            K  A  A + +    S H +R   AT           +    G   +     YT   D
Sbjct: 123 VKRYAEGANIEEVGRVSPHTLRHTFATRLYQETGKIRLVQKALGHSDLSTTMIYTHVVD 181


>gi|291514841|emb|CBK64051.1| Phage integrase family [Alistipes shahii WAL 8301]
          Length = 438

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 57/348 (16%), Positives = 110/348 (31%), Gaps = 65/348 (18%)

Query: 15  RTRHGKIIYYFRKGH----GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
           +TR  KIIY F        GRR+R        +I  +   +      R  I+  R  P+T
Sbjct: 94  KTRLEKIIYSFHHPRSLTSGRRVRTRESLG-DYIARFTREM--EEGTRLNIHKLRYGPST 150

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
           +K           +         +    FD       D D +        +   ++ ++ 
Sbjct: 151 IKNY-------KGFVVQFDEYCKAKRKQFD-----FADIDLKFYD--DFVAWFTAKNYSV 196

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE--GIRPWTKEDMQQFKSFW-- 186
           ++  + +  ++++ + A  +     N  +   + +  T        T+ +++   +    
Sbjct: 197 NTIGRHVKELKIIMRAAREEGLHD-NGAIESRKFRVLTADVENIYLTESEIRAIAALDLS 255

Query: 187 --SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-----NIFSIKTQKTGTIITVELPD 239
                   R  F    Y+  R SD       +++       +  +K QKTG  + + +  
Sbjct: 256 KNRHRDVARDIFLVGCYTAQRFSDYSTINEGNIRTLENGQQVIDLKQQKTGNHVVIPVRP 315

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-------------NKS- 285
               +L            +N   +    + +   K  A +AG+              KS 
Sbjct: 316 ELQAILEKY---------DNRLPRTYEQKVNHLIKEIAREAGITEKVEVSYIENGEKKSR 366

Query: 286 ---------AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
                     H  R+  AT    AG     +M   G KT  +   Y K
Sbjct: 367 LVEKCDLVKTHTARRSGATNMYLAGIPTIAIMKVTGHKTEREFMKYIK 414


>gi|256958170|ref|ZP_05562341.1| integrase [Enterococcus faecalis DS5]
 gi|256948666|gb|EEU65298.1| integrase [Enterococcus faecalis DS5]
 gi|315036216|gb|EFT48148.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0027]
          Length = 372

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 50/354 (14%), Positives = 110/354 (31%), Gaps = 50/354 (14%)

Query: 14  ERTRHGKIIYYFRKGH----GRRIRLPYPHESTFIPAYMSALTGSTPKREYIN--SPRKK 67
            + +     Y+         G+RI         F   + +A        +++     +++
Sbjct: 8   YKDKKTGKYYFVASLGFDLKGKRI-------QKFKRGFKTAKEAKKAYNQFMIDYQEKRE 60

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127
             T      EY K  +   +   +  +     +  +    +     I T  ++  +    
Sbjct: 61  KITFGNFYEEYYKCWYKNHVKEGTFKTNTGIIENHLSIFNEVQINAIETVDLQKLINYLS 120

Query: 128 H----------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
                      +P      + +++ +F+ A    ++  +    V R + + + +  WT +
Sbjct: 121 GEYKTKTGESLSPEYINLIICNIQSVFERAFIFGFIDEDISKKVSRVRVEEKEVNIWTID 180

Query: 178 DMQQFKSFWSEGSQ----PRLAFEFLLYSGLRCSDSCRAGVQHLQNN------------- 220
           DMQ+      E        ++ F FL  +GLR  ++     + +  +             
Sbjct: 181 DMQKVMLLSDESDSLLFFKKMFFRFLFMTGLRLGEALALNWEDVDFDSKVVYINKTMLVK 240

Query: 221 ---IFSIKTQKTGTII-TVELPDGFMKLLAMTPIGKET----FFINNDKQKMNATQFSIW 272
               F   T KT + I TV L D  ++L  +    +         + D   +  +    W
Sbjct: 241 NKREFRTTTPKTKSSIRTVSLDDETLRLFEIWREQQSPLKINLIFSIDGGTLAKSTTHGW 300

Query: 273 FKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
            K     A V     H +R   A++       +  +    G   +    E Y  
Sbjct: 301 LKKLCDLADVPVIKIHALRHSHASMLIALKEDSLVIKERLGHSRITTTLEKYGH 354


>gi|226940605|ref|YP_002795679.1| Site-specific recombinase, phage integrase family protein
           [Laribacter hongkongensis HLHK9]
 gi|226715532|gb|ACO74670.1| Site-specific recombinase, phage integrase family protein
           [Laribacter hongkongensis HLHK9]
          Length = 474

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 51/350 (14%), Positives = 109/350 (31%), Gaps = 48/350 (13%)

Query: 11  VTKERTRHGKIIYY--FRKGHGRRIRLPYPHE---STFIPAYMSALTGSTPKREYINSPR 65
           ++K R ++G++ Y    R     R+           +    +           ++I    
Sbjct: 4   ISKYRKKNGELSYQATVRVKQAGRVVFSATRSFPKESLARDWARRTEVEAASPDFITRHA 63

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSR--ISFESYFDQIIRK-SGDFDYRKITTKHIR-- 120
               T   L+  YR       L+ + +   S     D ++R    +    +++ + +   
Sbjct: 64  LGKMTFGDLLVRYRD-----ELSGSGKIGRSKRYVIDLLLRSSISERPISELSAQDLVEH 118

Query: 121 -SGVESRKHTPSSAIQFLTSMRVLFKWAVR--------QEYVAINPCLSVERP--KRKTE 169
                     P +  Q +++MR +  +A R        Q      P L  +    K +  
Sbjct: 119 CKIRRDAGTGPVTVFQDVSAMRTVLDYAKRIWSLPVSTQPVDDALPVLRAQTLVSKSRQR 178

Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLA-------FEFLLYSGLRCSDSCRAGVQHLQNNI- 221
             RP   E+++Q  +  +       A        +F + S +R  +  R     +     
Sbjct: 179 DRRP-ADEELEQIYAGLAARQSRSNAQIPHVDIIKFAIASCMRLGEIGRIRWDDIDEKRR 237

Query: 222 -FSIKTQKTGT-----IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKA 275
              I+ +K  +        + L      ++   P   E  F             S  F+ 
Sbjct: 238 CVLIRERKDPSNKYTNDQWIPLLGEAWDIVQRQPRTDELIF------PYKMESVSAAFER 291

Query: 276 KATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
                G+ +   H +R    ++  + G    E+    G K+ +    YT+
Sbjct: 292 TCAVLGIVDLRFHDLRHHGVSLLFEQGLKIQEVAMVSGHKSWNNLRRYTQ 341


>gi|169634016|ref|YP_001707752.1| putative prophage integrase [Acinetobacter baumannii SDF]
 gi|169152808|emb|CAP01827.1| putative prophage integrase [Acinetobacter baumannii]
          Length = 388

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 45/277 (16%), Positives = 94/277 (33%), Gaps = 28/277 (10%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPS 131
           +I E+         +     + E     +     +    ++  KHI   ++    K T  
Sbjct: 87  VIEEWLSIMKSQWTSKKYYDTVEYRLAYLTEDFKNLPINEVERKHISKKIKEIVAKGTLE 146

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVE--RPKRKTEGIRPWTKEDM-QQFKSFWSE 188
           +A + L   + +F +A+  +Y   NPC  VE   P+ +++        +M + F+   + 
Sbjct: 147 TASRALRLGKQVFDFAIASDYTDRNPCTLVEDVIPEYESDSHPCLPASEMPEFFRRMQAS 206

Query: 189 GSQ--PRLAFEFLLYSGLRCSDSCRAGVQ----HLQNNIFSIK--TQKTGTIITVELPD- 239
            S    ++A   + Y+G R ++  +A         +N ++ I     K    + V L   
Sbjct: 207 HSSSIVKMAMLLVCYTGTRITELLKARWDSGELDFENKVWIIPADRMKRRKELMVPLVPQ 266

Query: 240 --GFMKLLAMTPIGKETFFINNDKQK---MNATQFSIWFKAKATKAGVNKSAHGVRKFSA 294
                K L    I     F     +    M +       K    +  +    HG R   +
Sbjct: 267 IYALFKELESVKIDDGYIF-KKRGKPYEYMTSESVLTMIKRMGYEDKM--VTHGFRSLFS 323

Query: 295 TISADAGATAHELMAT-YGW-----KTVDQAETYTKG 325
           T + ++     E++           K    ++ Y + 
Sbjct: 324 THANESKLFRGEVIDYQIAHVNKSTKADKTSKIYNRA 360


>gi|317154897|ref|YP_004122945.1| integrase family protein [Desulfovibrio aespoeensis Aspo-2]
 gi|317154998|ref|YP_004123046.1| integrase family protein [Desulfovibrio aespoeensis Aspo-2]
 gi|316945148|gb|ADU64199.1| integrase family protein [Desulfovibrio aespoeensis Aspo-2]
 gi|316945249|gb|ADU64300.1| integrase family protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 355

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 52/288 (18%), Positives = 101/288 (35%), Gaps = 34/288 (11%)

Query: 85  GSLAVNSR--ISFESYFDQIIRKSGDFDYRKITTKHIRSGV--ESRKHTPSSAIQFLTSM 140
              + +++   +      ++++  GD     IT++     +   SR  TP +A   L  +
Sbjct: 70  QERSFSTQYYKNTRYAAQRLLKHFGDVPCSTITSRMADDYLLSRSRSSTPLAANADLLLL 129

Query: 141 RVLFKWAVRQE--YVAINPCLSVERPKRKTEGIRPWTKED--MQQFKSFWSEGSQPRLAF 196
           R  F WA+++   ++A NP   +E         +  T +   + +  +      QP L  
Sbjct: 130 RATFAWAMKRGQRFIADNPFAGLESFPSHLAEKKRRTPDSQTLDRIIAAAKPEDQPYLW- 188

Query: 197 EFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTI----ITVELPDGFMKLL----- 245
             +  +  R  +  R   +  + ++    +KT K          V + D   ++L     
Sbjct: 189 -VIRETLARSVEVHRLKWKRVNFEDRYVELKTFKNKDRKPVLRQVPMTDKLYEVLSELYA 247

Query: 246 AMTPIGKETFFINNDKQKMNA-------TQFSIWFKAKATKAGVNK-SAHGVRKFSATIS 297
              P  +  F+  +   K+                K    KAGV   S H  R   A++ 
Sbjct: 248 RRDPEKEWVFWCRSYSHKLKRMVDGPYTKGRYTMLKTACRKAGVGYYSFHRFRASGASVM 307

Query: 298 ADAGATAHELMATYGWKTVDQAETY---TKGADRIRLGI--KNSRRIS 340
            + GA    +    G       E Y    +  +R  + I    SRR++
Sbjct: 308 DNNGALISGIQHLLGHADRRSTEIYLEKLRNVERDAMAIYEAQSRRVA 355


>gi|317123482|ref|YP_004097594.1| integrase [Intrasporangium calvum DSM 43043]
 gi|315587570|gb|ADU46867.1| integrase family protein [Intrasporangium calvum DSM 43043]
          Length = 399

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 57/389 (14%), Positives = 114/389 (29%), Gaps = 77/389 (19%)

Query: 10  FVTKERTRHGKIIYYF---RKGHGR--RIRLPYPHESTFIPAYMS-ALTGSTPKREYINS 63
             TK R + G+        R+  G+  R  L    +     A  +        KR ++  
Sbjct: 12  HTTKYRGKDGRWHARVTVGRRIDGQLDRRHLQRKTKRELDEAVRALERDRDAGKRTWLQG 71

Query: 64  PRKKPTTLKWLISEYR-KSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRS 121
            +     L+  I+     S  W +L+     +++S     +I K G      +  + +  
Sbjct: 72  EQTLGGWLEHWITAILPLSVRWKTLS-----TYQSLMKVHVIPKMGAARLADVRPEALEL 126

Query: 122 GVESRKHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
                 +   SA         +R     AVR+ +++ NP      P+  T  I P T ++
Sbjct: 127 LYGQLLNEGRSAHVVHAVHRVLRSALGEAVRRHHLSQNPATVARPPRVATVEIDPLTSDE 186

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIK----------- 225
            +      + G+     +   L  GLR  ++       +     +  ++           
Sbjct: 187 CRSLLE-AARGTPNAARWSVALALGLRQGEALGLSWDDVDLDAGVIHVRRAVQRRTWQHG 245

Query: 226 --------------------TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN 265
                                ++ G ++ VEL     + L + P    +    +   ++ 
Sbjct: 246 CGSKPGGQPACGHGRGGYCPQRRAGGLMLVELKTRASRRLIVLPGPLLSELQAHRSDQLR 305

Query: 266 A--TQFSIW---------------------FKAKATKAGVNK----SAHGVRKFSATISA 298
               +  +W                     FK                H  R  +AT+  
Sbjct: 306 RQEERRGLWDGTHNLVFATDVGGLIDPARDFKDWKNLLKAGGVRTVRLHDARHTAATLLL 365

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGAD 327
             G     +M+  GW  +  A+ Y     
Sbjct: 366 VQGVDLRTVMSIMGWTEMATAQRYVHAVS 394


>gi|254672368|emb|CBA05605.1| putative integrase [Neisseria meningitidis alpha275]
          Length = 404

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 46/297 (15%), Positives = 101/297 (34%), Gaps = 21/297 (7%)

Query: 53  GSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYR 112
           G   ++E          T + + +E+ K    G    ++   ++S    +    G     
Sbjct: 82  GEAKQQEKRERQAAVSNTFRSIAAEWHKHRETGLTGNHAARVWDSLEKDVFPMLGGLPVS 141

Query: 113 KITTKHIRSGVESRKHTPS--SAIQFLTSMRVLFKWAVRQEYVAINPCL-SVERPKRKTE 169
           +I    ++  +E+     +  +A + L  ++ +F +A+R E    NP +  V   K   +
Sbjct: 142 EIKVSQVKEVIEAVAVRGALETAGRILQRIKAVFTYAIRTERAENNPAVPLVGLIKAPKQ 201

Query: 170 GIRP-WTKEDMQQFKSFWSEGSQPR---LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI- 224
             +P   + ++ +F          R   +A + ++ + +R  +   A       N     
Sbjct: 202 KHQPALPQSELTEFYRRLMLEQAERQTKIAMQLIMLTFVRNGELRAAEWVEFDLNGAEWS 261

Query: 225 ---KTQKTGTIITVELPDGFMKLLAMTP--IGKETFF---INNDKQKMNATQFSIWFKAK 276
                 K      V L D  ++LLA      G   +    + +  + M+    S      
Sbjct: 262 IPAAKMKMKAPHIVPLADWTLELLAELKEITGHSRYLFPSVKDPDKHMSENTLSYLMGRM 321

Query: 277 ATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKT---VDQAETYTKGADRIR 330
             K G+  + HG R  +  +  + G  +  +           V  A   T+   + +
Sbjct: 322 GYK-GI-ATPHGFRSLATDVLNENGFDSDVIERQLAHVEQNKVRAAYHRTEYIPQRK 376


>gi|322617244|gb|EFY14149.1| putative phage integrase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322619068|gb|EFY15954.1| putative phage integrase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322625135|gb|EFY21963.1| putative phage integrase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322630186|gb|EFY26957.1| putative phage integrase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322634388|gb|EFY31122.1| putative phage integrase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322635273|gb|EFY31988.1| putative phage integrase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322647616|gb|EFY44103.1| putative phage integrase [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322650577|gb|EFY46984.1| putative phage integrase [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322656397|gb|EFY52689.1| putative phage integrase [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322661577|gb|EFY57800.1| putative phage integrase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322661658|gb|EFY57877.1| putative phage integrase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322668228|gb|EFY64386.1| putative phage integrase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322672842|gb|EFY68950.1| putative phage integrase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322674976|gb|EFY71062.1| putative phage integrase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322683666|gb|EFY79679.1| putative phage integrase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322687742|gb|EFY83711.1| putative phage integrase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|323192043|gb|EFZ77278.1| putative phage integrase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323200525|gb|EFZ85603.1| putative phage integrase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323204950|gb|EFZ89935.1| putative phage integrase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323206693|gb|EFZ91650.1| putative phage integrase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323211766|gb|EFZ96599.1| putative phage integrase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323218628|gb|EGA03335.1| putative phage integrase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323220029|gb|EGA04499.1| putative phage integrase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323224799|gb|EGA09064.1| putative phage integrase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323232492|gb|EGA16594.1| putative phage integrase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323235267|gb|EGA19352.1| putative phage integrase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323241395|gb|EGA25427.1| putative phage integrase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323248626|gb|EGA32556.1| putative phage integrase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323252075|gb|EGA35935.1| putative phage integrase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323258621|gb|EGA42284.1| putative phage integrase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323262348|gb|EGA45906.1| putative phage integrase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323268184|gb|EGA51660.1| putative phage integrase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323270598|gb|EGA54043.1| putative phage integrase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
          Length = 380

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 52/344 (15%), Positives = 114/344 (33%), Gaps = 36/344 (10%)

Query: 19  GKIIYYFR-KGHGRRIRLPYPHESTFIPAYMSALTGS-----------TPKREYINSPRK 66
           G+ I+ FR +   +  ++       F  A                     K++     +K
Sbjct: 8   GRKIWRFRYRFDNKSQKITLGEYPAFSLAEARLWREKCRSMVAHGINPAQKKQEEKLKQK 67

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVES 125
            PTT+K     +         +     +     ++ II   G  +  ++TT HI+  ++ 
Sbjct: 68  DPTTVKTFAKRWLT--DIVEKSNRDPRNITRVIEKDIIPIIGKLELEELTTAHIQVVLDR 125

Query: 126 RKHTPSSAIQFLT--SMRVLFKWAVRQEYVAINPCLSVE--RPKRKTEGIRPWTKEDMQQ 181
            K   S  +  LT   ++ +  +A+ +  +  NP  ++E     + T      T E++  
Sbjct: 126 IKQRGSDHVALLTRNVLKRMLAYAISRGIIFNNPAAAIEARYIAQATSRDVALTAEEIGI 185

Query: 182 FKSFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIIT 234
                   +   + +LA   L+   +R S+   A    +  N    +      K      
Sbjct: 186 LLRGIYTSNMNRRHKLALHLLIICMVRKSEMIEATWSEVNFNALEWRIPGERMKMDNPHI 245

Query: 235 VELPDGFMKL---LAMTPIGKETFFI--NNDKQKMNATQFSIWFKAKATKAGV-NKSAHG 288
           V L    + +   L          F   N+ ++ ++ T  +   +       V +   H 
Sbjct: 246 VPLSKQALAMFEELKFLAGDSPYVFPSRNDHRRPISKTTLNCAVR--TLDLNVRDFVIHD 303

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA--DRIR 330
            R+ ++T+  + G  +  +      K       Y +    ++ R
Sbjct: 304 FRRTASTLLHEQGYNSDWVEKCLAHKIGGVRGIYNRAEYLNQRR 347


>gi|313149680|ref|ZP_07811873.1| transposase [Bacteroides fragilis 3_1_12]
 gi|313138447|gb|EFR55807.1| transposase [Bacteroides fragilis 3_1_12]
          Length = 406

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 57/304 (18%), Positives = 109/304 (35%), Gaps = 49/304 (16%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYR--KITTKH---IRSGVESRKHTPS 131
            ++KS     +A   R +  S    + +  G    +  +I  +     +  +     + +
Sbjct: 115 AWKKSMKKDGIAAAYRSTRSS----LAKFVGSKQVKMSQINQRFVTCYKDFLSCNGVSEN 170

Query: 132 SAIQFLTSMRVLFKWAVRQEYVA----------INPCLSVERPKRKTEGIRPWTKEDMQQ 181
           +   ++ + R L+  AV+  +V             PC +V+R   K + +R  T+ D+  
Sbjct: 171 TEAYYMRNFRTLYNLAVKDGFVPKCTYPFKDICTKPCKTVKRALDKEQMLR-LTQSDLGA 229

Query: 182 FKSFWSEGSQPRLAFEFLLYS-GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
                 E  Q R  F F  Y+ G+   D      +++  N  S +  K+   I + +   
Sbjct: 230 ----NPELMQSRALFLFGFYAQGMAFVDIIFLRWKNICGNSISYRRHKSKQTIQITITPQ 285

Query: 241 FMKLLAMTPIGKE----TFFI------------NNDKQKMNATQFSIW-FKAKATKAGVN 283
              +L    I KE      F             N  +Q   A   +    K  + K G+ 
Sbjct: 286 IQAILDEYGINKENVDGYIFPIIQPVINPQTDKNEYEQYRVALGRTNRHLKTISGKLGIA 345

Query: 284 --KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
              + +  R   AT++ + GA    +    G    +    Y K  DR      N +RI+ 
Sbjct: 346 PSLTTYTARHTWATLAREYGAPVATISTGLGHTKEEMTLVYLKELDR-----SNLKRING 400

Query: 342 VVDS 345
           +++S
Sbjct: 401 LINS 404


>gi|259507781|ref|ZP_05750681.1| integrase [Corynebacterium efficiens YS-314]
 gi|259164574|gb|EEW49128.1| integrase [Corynebacterium efficiens YS-314]
          Length = 404

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 54/342 (15%), Positives = 114/342 (33%), Gaps = 55/342 (16%)

Query: 56  PKREYINSPRKKPTTLKWLISEY-RKSAHWGSLAVNSRISFESYFDQIIRKSG------- 107
           P ++     ++K  T+   ++ Y ++ A  G +  ++   +    +  I ++        
Sbjct: 62  PPKDRNKKNQEKQITVGEYLTAYNQRLADHGVIRASTFQQYTRVTENRITRADMVQGRAG 121

Query: 108 ---DFDYRKITTKHIRSGVES----RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINP-CL 159
              D    ++T++HI+   ++       T     +    ++  F  A+ +  +   P  L
Sbjct: 122 QLRDVPMVEVTSQHIQDWWDAVVALFPDTAEYNRKAFKRLKAGFNDALERGIITATPVTL 181

Query: 160 SVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-- 217
                    +  +P   ED + FK   +  ++ R      L+ GLR  ++      ++  
Sbjct: 182 KAPARSAAPKYDKPL-LEDAELFKVLGAVPARYRALTVLTLFHGLRVGEAIGLHTHNVVV 240

Query: 218 -----------------------QNNIFSIKT-QKTGTII-TVELPDGFMKL------LA 246
                                     +  ++   KT   +  V +   F ++      L 
Sbjct: 241 AGDVPRAPYVVVQVRDQLQRLSVDGKVQLVRQPTKTQAGVRDVYVFPEFTQMMQEHLSLY 300

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATA 304
                   F +    + +  T F       A KAGV +    H  R++  T  A+ GAT 
Sbjct: 301 ADKAEGGLFTVTTGGKPVMDTSFRSVLIRAADKAGVPRRVHPHSGRRWITTRLAEMGATP 360

Query: 305 HELMATYGWKTVDQ-AETYTKGADRIRLGIKNSRRISSVVDS 345
            E+ +  G   +      YT    R     +    I S +D+
Sbjct: 361 AEIGSVLGDTDLSTITHIYTSV--RQSRPQELMGMIGSTLDN 400


>gi|224826550|ref|ZP_03699651.1| integron integrase [Lutiella nitroferrum 2002]
 gi|224601151|gb|EEG07333.1| integron integrase [Lutiella nitroferrum 2002]
          Length = 274

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 65/222 (29%), Gaps = 51/222 (22%)

Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217
              + R +++       T+++++   S   EG+  RL  E +  +GLR  +     ++ +
Sbjct: 46  MQGLRRVQKRHRVPVVLTQDEVKTVLSLM-EGT-CRLMAELMYGAGLRVHECVTLRIKDV 103

Query: 218 Q--NNIFSIKTQKTGTIITVELPDGF-----------------------------MKLLA 246
                  S++  K     T  LP                                  L  
Sbjct: 104 DFSTRTISVRNSKGSKDRTTVLPAQLGSKLQQHLLRVATQHKEDLARGAGLAPMPDALSR 163

Query: 247 MTPIGKETF-----FINNDKQKMNATQF-----------SIWFKAKATKAGVNK--SAHG 288
             P    +F     F +   +    +                FK    +A ++K  S H 
Sbjct: 164 KYPSASSSFAWQYAFPSTALRPWGDSGRLVRWHTSDTTIQRAFKKAVAQAQIHKHASVHC 223

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
           +R   AT    AG     +    G +++     YT      R
Sbjct: 224 LRHSFATHLLAAGTDIRTIQLLLGHRSLQTTMIYTHVLQATR 265


>gi|162454549|ref|YP_001616916.1| hypothetical protein sce6269 [Sorangium cellulosum 'So ce 56']
 gi|161165131|emb|CAN96436.1| hypothetical protein predicted by Glimmer/Critica [Sorangium
           cellulosum 'So ce 56']
          Length = 423

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 59/376 (15%), Positives = 109/376 (28%), Gaps = 48/376 (12%)

Query: 7   LPPFVTKERTRHGKIIYYFRK----GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62
           +P   T    RHG   +  R     G    I LP  +          +L  +        
Sbjct: 1   MPRPRTGTIQRHGD-HWDARITLQDGSRPWICLPAGYSEARARDRAKSLAETARAEGATR 59

Query: 63  SPRKKPT------TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT 116
            PR +        T+   +  +  +     L+  S          +  + GD     +T 
Sbjct: 60  PPRGRTAAAPAGETVAAWVERWTAAREERGLSSAS-GDLGRLRKWLFPQLGDKPITAVTR 118

Query: 117 KHIRSGVESRKHT-------PSSAIQFLTSMRVLFKWA-----VRQEYVAINPCLSVERP 164
           + + + VE    +         +A+     +  LF  A     +    +A NP   V  P
Sbjct: 119 RDVEAFVEHLDSSVRAGEQSWKTAVNTWGLVSKLFDDACSAKTLSLRVLASNPAAEVRGP 178

Query: 165 KRKTEGIRP-WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNI 221
            R  +  +      +     S  +   + R A     Y  +R S+        +     I
Sbjct: 179 DRGIKKAKAYLYPSEFLPLVSSPNISIEWRRAVALATYLYVRASELRALTWDDVDLERGI 238

Query: 222 FSIKTQ----------KTGTIITVELPDGFMKLLAMTPI---GKETFFINNDKQKMNATQ 268
             +             KTGT     +    M LL        G+       D + +    
Sbjct: 239 IHVHRSLDREGSAKSTKTGTTRRFTIEPALMPLLRAMHAESGGRGRVIQLPDDRHLARAL 298

Query: 269 FSIWFKAKATKAGV--------NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
             +   A+  +  +        + + H +R    T  A  G    ++M   G       +
Sbjct: 299 RGLMTTARLDRCELYAADATRKSMTWHDLRATGITWLAIRGDDPLKIMQRAGHAGFQTTQ 358

Query: 321 TYTKGADRIRLGIKNS 336
            Y + A+ +R G  + 
Sbjct: 359 GYIREAEAVRAGFGDV 374


>gi|86137928|ref|ZP_01056504.1| probable integrase/recombinase protein [Roseobacter sp. MED193]
 gi|85825520|gb|EAQ45719.1| probable integrase/recombinase protein [Roseobacter sp. MED193]
          Length = 320

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 44/284 (15%), Positives = 88/284 (30%), Gaps = 23/284 (8%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI-IRKSGDF 109
                      +       TL  +   Y +     S +           ++I        
Sbjct: 35  WAARAEYEILNHDKVAAKLTLGEVFERYAREV---SPSKRGHRWEAIRLEKIGRDAIAKI 91

Query: 110 DYRKITTKHIRSGVESRKH--TPSSAIQFLTSMRVLFKWAV-RQEYVAINPCLSVERPKR 166
               ++ K      ++R     P+S I+ +  M  +   A    E +A NP   V +P +
Sbjct: 92  RLEDLSAKDFSKWRDARLKEVAPASVIREMQLMSSVLTAARRDWELIATNPLSDVRKPSK 151

Query: 167 KTEGIRPWTKEDMQQF-----KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--N 219
                R  T  +++       +      ++   AF+F + + +R  +      + +    
Sbjct: 152 PPARDRLPTAAEIEAMQFSAGEDLDKATARAFHAFKFAMVTAMRAGEIAGLEWERVDLER 211

Query: 220 NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK 279
            +  +   K G    V L    ++LL   P     F        +++ Q  + F+    +
Sbjct: 212 RVALLTHTKNGRPREVPLSTRAVELLRGLPDLDPVF-------GLSSRQLDVLFRKLRDR 264

Query: 280 AGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           AGV   + H  R  + T  +        L    G   + Q   Y
Sbjct: 265 AGVTGLTFHDSRHAAITALSTK-LDVLALARMVGHTDLRQLRVY 307


>gi|305681466|ref|ZP_07404273.1| site-specific recombinase, phage integrase family [Corynebacterium
           matruchotii ATCC 14266]
 gi|305659671|gb|EFM49171.1| site-specific recombinase, phage integrase family [Corynebacterium
           matruchotii ATCC 14266]
          Length = 411

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 47/295 (15%), Positives = 93/295 (31%), Gaps = 44/295 (14%)

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
           P+    T+  L+ +        S   N++ +       +           +    +RS +
Sbjct: 83  PQTSTITVHELVKKKLS----QSAKPNTQQARNYLLANLGD-LSPIPITALRPAMVRSWL 137

Query: 124 ESRK--------HTPSSAIQFLTS---MRVLFKWAVRQEYVAINPCLSV---ERPKRKTE 169
              +         +P +A         +R +   AV  + +  +P   V      K+   
Sbjct: 138 HVLETGRPWVSDRSPLAANTISMIAGQLRAILTQAVNDDVILRHPMRGVVISSASKQVER 197

Query: 170 GIRPWTKEDMQQFKSFWSEG----SQPRLAFEFLLY--SGLRCSDSCRAGVQHLQ--NNI 221
              P T+E     ++ +S G      P+LA   ++   +GLR  +     V+ +      
Sbjct: 198 DDIPDTEEIQALIRAAYSSGRGVSPNPQLARMIIVAATTGLRGGEIGGLRVKDVDFFRRE 257

Query: 222 FSIKTQ------------KTGTIITVELPDG----FMKLLAMTPIGKE-TFFINNDKQKM 264
             +  Q                  TV L +         L   P G+E T F     +  
Sbjct: 258 LHVSQQVSQNSAEPTAPKSRRASRTVPLTEETLAALNTQLRERPRGREETIFAAKSGEPY 317

Query: 265 NATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
           N+      FK    + GV  + H +R + A+   ++G +   +    G  +    
Sbjct: 318 NSLAIGTQFKNLTKRVGVTTTFHALRHYYASKLIESGVSVSVVQRVLGHSSPATT 372


>gi|291517045|emb|CBK70661.1| Site-specific recombinase XerD [Bifidobacterium longum subsp.
           longum F8]
          Length = 418

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 64/392 (16%), Positives = 126/392 (32%), Gaps = 74/392 (18%)

Query: 23  YYFRK--------GHGRRIRLPYPHESTFIPAYMS--ALTGSTPKREYINSPRKKPTTLK 72
           + FR+        G  R +      ++     + +  A    T       SP  K    +
Sbjct: 23  WEFRREVGRDPATGKRRYVSAKGRTKADARERFDAKVAEMERTGLLPGAKSPYLKDYAER 82

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE--SRKHTP 130
           WL  EYR      ++   +  +        +   G     ++T  HIR  +   S++  P
Sbjct: 83  WL-EEYR-----LNVKPTTYRTRAGRIHACMEVIGCIRLTELTPDHIRQCMRVLSKRLAP 136

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF-KSFWSEG 189
           S+      S++++      +E + ++PC  V+ P+ +    R  + +  +Q  ++  + G
Sbjct: 137 STLKDHFVSLKMMLDQVELEELIPVDPCRRVKPPRVEPTETRILSPDQPKQLIEAVPNRG 196

Query: 190 SQPR-------------LAFEFLLYSGLRCSDSCRAGVQHLQN----------------- 219
           ++ R             L FE    +G+R  +        L+                  
Sbjct: 197 AKRRGPALTVDVDESWMLLFELAFTAGMREGERYALMPYELEQRDGVPGINVQQQIQQYG 256

Query: 220 -----------------NIFSIKTQKTGTI-ITVELPDGF-----MKLLAMTPIGKETFF 256
                             I  + T KT      V +          ++  +    ++  F
Sbjct: 257 KPEDAVMPAWLKAEHLYGILWLTTPKTHAAHRFVPISTSLWQRLWARIKRLDIGPRDLIF 316

Query: 257 INNDKQK-MNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKT 315
            N+      ++T+   W KA         + H  R ++A+++A A        A  G  +
Sbjct: 317 TNSRGNPVRSSTERYNWNKALKAAGLPPVTIHSARHWTASMTARANMPDDARTAIMGHTS 376

Query: 316 VDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
           +     YT   D   L     R I  + D  D
Sbjct: 377 ISMTNHYTHR-DAASLAALLDRAIPDLHDERD 407


>gi|300920659|ref|ZP_07137072.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 115-1]
 gi|300412360|gb|EFJ95670.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 115-1]
          Length = 396

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 46/308 (14%), Positives = 107/308 (34%), Gaps = 28/308 (9%)

Query: 52  TGSTPKREYIN--SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGD 108
           +G +P RE     +  K   T      ++ +      +A ++R    S +  ++  K   
Sbjct: 78  SGRSPAREKARDKARIKDAETFGAWAEKWLRGYQ---MAESTRDMRRSVYQRELKSKFAQ 134

Query: 109 FDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
               +IT + +R+  ++   +  P++A+     +  +++WA+ +     NP   V     
Sbjct: 135 QKLSEITHEDLRALTDNIVERGAPATAVHAREIVLQVYRWAIERGQKVENPADLVRPASI 194

Query: 167 KT--EGIRPWTKEDMQ-QFKSFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221
                  R  T  ++   ++     G+ P  R A + LL + +R S+   A    +  + 
Sbjct: 195 AKFEPRDRALTPIEIGLMYRYMERVGTTPSIRAAVKLLLLTMVRKSELTNATWNEINFSE 254

Query: 222 FSIK----TQKTGTIITVELPDGFMKLLAMTPI--GKETFFINNDKQ---KMNATQF--- 269
                     K      V L    M ++       G   F + +       M++      
Sbjct: 255 ALWTIPKERMKRRNPHLVFLSRQAMDIMIALKTFAGSSDFILPSRYDSDAPMSSATLNRV 314

Query: 270 -SIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            ++ ++    +  +      H +R+ ++T+  +AG     +  +   +       Y K  
Sbjct: 315 LTLTYRLAQKEGELLPKFGPHDLRRTASTLLHEAGYNTDWIEKSLAHEQKGVRAVYNKAE 374

Query: 327 DRIRLGIK 334
            R +    
Sbjct: 375 YREQRAEM 382


>gi|296136647|ref|YP_003643889.1| integrase family protein [Thiomonas intermedia K12]
 gi|295796769|gb|ADG31559.1| integrase family protein [Thiomonas intermedia K12]
          Length = 348

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 42/287 (14%), Positives = 89/287 (31%), Gaps = 33/287 (11%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
              TTL  +   Y  +     L      S ++Y      + G      I    + +  + 
Sbjct: 56  AGKTTLAQVAERYAATV----LPGKRAHSGKTYLQAASSRFGPLFLSAIRAVDVAAWRDE 111

Query: 126 R---KHTPSSAIQFLTSMRVLFKWAVRQEYVAI---NPCLSVERPKRKTEGIRPWTKEDM 179
                 +  S I  L ++  LF +A ++  + +   NP   + +P +     R  T  ++
Sbjct: 112 LLAGGLSAQSVIHHLNALSGLFSFAEKELSITLPAGNPVRGIRKPAKPRGRDRRLTAGEL 171

Query: 180 QQFKSFWS-----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN--IFSIKTQKTGTI 232
                         G  P++     + S +R  +        +        +   K G  
Sbjct: 172 DYLLRAARAARARIGGLPQV-ITLAVESSMRLGELLGLEWSRIDLQKRTAHLVDTKNGES 230

Query: 233 ITVELPDGFMKLLAMTPIGKETFFI-----NNDKQKMNA--TQFSIWFKAKATKAGV--- 282
            TV L    +  L   P   +         ++ ++            ++A  T  G+   
Sbjct: 231 RTVALSSAAVATLQSLPRRIDGRVFGWAASDSFEKTWTRCKASARKLYEADCTAQGIRPD 290

Query: 283 -----NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
                +   H +R  + +   + G    E+ +  G K++   + YT 
Sbjct: 291 PAFLADLRFHDLRHEATSRLFEKGLGVMEVASMTGHKSLSMLKRYTH 337


>gi|238791280|ref|ZP_04634919.1| Integrase [Yersinia intermedia ATCC 29909]
 gi|238729413|gb|EEQ20928.1| Integrase [Yersinia intermedia ATCC 29909]
          Length = 291

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/244 (13%), Positives = 74/244 (30%), Gaps = 20/244 (8%)

Query: 115 TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE---RPKRKT-EG 170
               IR  +    +  S+    L+++R + K A   + + ++  L +    R K  T   
Sbjct: 46  KVAKIRMTMLDEGYAVSTVNMALSALRAIAKTAFNFDQMNVDVLLRINAVVRVKGDTTRK 105

Query: 171 IRPWTKEDMQQFKSFWSEG------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
            R  T+++++Q               +       L  +GLR  +  +         +  +
Sbjct: 106 GRALTRQEIRQLLKVAKSHQEPARRCRDAAILLTLCGAGLRVGELVKLQQDDYAEGVLVV 165

Query: 225 KTQKTGTIITVELPDGFMKLLAMT---PIGKETFFINNDKQKM------NATQFSIWFKA 275
           +  K      + +     K L          +  F    +  +           +   + 
Sbjct: 166 RQGKGRKYREIHVAPAVDKALTAWLAMSREGDALFTKIYRSGLPASTALTTAGVTAILEQ 225

Query: 276 KATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIK 334
               A V + + H +R+   T   + GA  + +    G   +     Y    D  ++   
Sbjct: 226 LRITASVAEFTPHDLRRTFITQLLEQGADINTVRQLAGHSDISTTARYDHRGDEAKVMAA 285

Query: 335 NSRR 338
              +
Sbjct: 286 QRLK 289


>gi|240016294|ref|ZP_04722834.1| putative integrase [Neisseria gonorrhoeae FA6140]
 gi|240118273|ref|ZP_04732335.1| putative integrase [Neisseria gonorrhoeae PID1]
 gi|240121414|ref|ZP_04734376.1| putative integrase [Neisseria gonorrhoeae PID24-1]
 gi|240126012|ref|ZP_04738898.1| putative integrase [Neisseria gonorrhoeae SK-92-679]
          Length = 313

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 43/299 (14%), Positives = 92/299 (30%), Gaps = 32/299 (10%)

Query: 40  ESTFIPAYMS-ALTGSTPKREYINSPRKKPTT--LKWLISEYRKSAHWGSLAVNSRISFE 96
            +TF  A  + A       +         P       LI  Y        +  + R + E
Sbjct: 7   SATFERASDAKAWAARIESQIMDGIQGNAPRNTIFADLIRRYL-----SEVTPSKRGARE 61

Query: 97  ---SYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--TPSSAIQFLTSMRVLFKWAV-RQ 150
                   +           +  +      + R    +P+S  + LT++  + + A+   
Sbjct: 62  ESYRIGRALKTPLAKVRLADLRPQDFADWRDQRLQEVSPTSVGRELTTLSAVCEHAMKEW 121

Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-------SEGSQPRLAFEFLLY-- 201
             +  NP   + +PK+     R  T++++    +          + +  R+A   L    
Sbjct: 122 GLLRENPVRKISKPKKSRARTRRPTEQEIADICAALLYRPNEKPKMAVQRVAVAVLFAIE 181

Query: 202 SGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN 259
           + +R  + C      +  +  I  +   K G    V L     +L+       +T+  + 
Sbjct: 182 TAMRAGEICGLKWADVNMRRRIAHLPITKNGDSRDVPLSLRAAELIEQLRGIDDTWVFSL 241

Query: 260 DKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVD 317
           D     A    + F+      G+     H  R+ + T  +        L    G + + 
Sbjct: 242 D-----AKSLDVLFRRARDNCGIQGLHFHDTRREALTRLSKK-VPVEVLAKISGHRDLR 294


>gi|167991593|ref|ZP_02572692.1| site-specific recombinase, phage integrase family [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|205330049|gb|EDZ16813.1| site-specific recombinase, phage integrase family [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
          Length = 326

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 45/307 (14%), Positives = 101/307 (32%), Gaps = 23/307 (7%)

Query: 26  RKGHGRRIRLPYPHESTFI--PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAH 83
           R   G+RIR  +  ++  +    Y  A       ++     R    TL  L+  + K  H
Sbjct: 18  RGRDGKRIRRKFERKAEALAFERYTIA----NASQKEWGGQRADRRTLTELLDIWWK-YH 72

Query: 84  WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK---HIRSGVESRKHTPSSAIQFLTSM 140
             +    ++    ++  + I   GD    ++  +     RS       + ++  + +  +
Sbjct: 73  GQNHEHGTKEF--NHLLKTISGIGDIPVSRMNKRALMDYRSMRLRDGISAATINRDMYRL 130

Query: 141 RVLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199
             +F   ++  E+   +P   +         +    K ++++  +  +      L     
Sbjct: 131 SGMFTKLIQLDEFSGQHPIHGLPPLTEANPEMTFLEKAEIEKLLNVLT--GDDLLVALLC 188

Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN 259
           L +G R ++        + +   +    K G   TV + +   K +      K       
Sbjct: 189 LSTGGRWTEVATLKPAQITSCRVTFLKTKNGKKRTVPISEELEKKVKEEASAKLF----- 243

Query: 260 DKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
              K++  +F    +        N++ H +R   A+     G     L    G  ++ Q 
Sbjct: 244 ---KVDYEKFCEILRRVKPDIPPNQATHILRHTFASHFMMNGGNIIALQQILGHASIQQT 300

Query: 320 ETYTKGA 326
            TY   A
Sbjct: 301 MTYAHLA 307


>gi|125625278|ref|YP_001033761.1| putative integrase [Lactococcus lactis subsp. cremoris MG1363]
 gi|124494086|emb|CAL99087.1| putative integrase [Lactococcus lactis subsp. cremoris MG1363]
 gi|300072088|gb|ADJ61488.1| putative integrase [Lactococcus lactis subsp. cremoris NZ9000]
          Length = 392

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 44/314 (14%), Positives = 100/314 (31%), Gaps = 48/314 (15%)

Query: 59  EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH 118
           + I   +    + + L   + +S      A + RI   +    I+ + G +   +I    
Sbjct: 59  QTIARKKVSFDSFESLTLSWFESYKLTVKANSIRIVNNNLKVYILPELGAYRVDRINPVL 118

Query: 119 IRSGVESRKHTPSSAI---------------QFLTSMRVLFKWAVRQEYVAINPCLSVER 163
           +++ V       ++A                  L  ++ +  + ++   +  NP   V  
Sbjct: 119 LQTIVNKWAKNANTAKIVNGKRERGKCKDYKVMLNIIKRILDYGIQLGAIEENPATKVFP 178

Query: 164 PKRKTEG---IRPWTKEDMQQFKSFWSE----GSQPRLA--FEFLLYSGLRCSDSCRAGV 214
           PK K      I+ +  E+++QF ++        +  R    + FLL +GLR  ++     
Sbjct: 179 PKLKIREVSKIKYFDNEELKQFLTYLDTLETTPTNKRRITLYRFLLATGLRIGEALALSW 238

Query: 215 QHLQ---------------NNIFSIKTQKTGTII------TVELPDGFMKLLAMTPIGK- 252
             +                  + ++   K           T+++   + K      +   
Sbjct: 239 SDIDFFDKSVSVSKTMIQARGVQNMPKTKESNRAIALDNDTIKMLKEWKKCQNNNTVRLI 298

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATY 311
           ++   + + +           K    +A V N   HG R   A++  +      E+    
Sbjct: 299 DSPIFSYNGKTYTYINEVTQLKKHFARANVPNIGFHGFRHTHASLLMNNDVNPKEIQRRL 358

Query: 312 GWKTVDQAE-TYTK 324
           G         TY+ 
Sbjct: 359 GHADYAITMNTYSH 372


>gi|313899314|ref|ZP_07832827.1| site-specific recombinase, phage integrase family [Clostridium sp.
           HGF2]
 gi|312955887|gb|EFR37542.1| site-specific recombinase, phage integrase family [Clostridium sp.
           HGF2]
          Length = 396

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 60/365 (16%), Positives = 112/365 (30%), Gaps = 56/365 (15%)

Query: 10  FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
           +  K     GK  + +         +P           +S        R+ +N       
Sbjct: 25  YAYKYIDAFGKPQFVYAWK-----LVPTDRTPAGKREDISLREKEQEIRQDLNDGINTAG 79

Query: 70  ---TLKWLISEYRKSAHWGSLAVNSRISFESYFDQII-RKSGDFDYRKITTKHIRSGVES 125
              T+  L  +Y K     +   +++ ++    + +   K G      I    +++ +  
Sbjct: 80  KKMTVYELFQKYLKQQR--NTRASTQNTYHYLLEFLKKDKFGARSIDGIKISDVKAWLLE 137

Query: 126 RKHTPSSAIQFL---TSMRVLFKWAVRQEYVAINPCL--SVERPKRKTEGIRPWTKEDMQ 180
            +    +    L    +++  FK A+  + +  NP         K  T+  +  TKE  +
Sbjct: 138 LRDNGLAYGTVLFYKRALKPAFKMALHDDCIIKNPFDFSLSSVMKNDTQARQALTKEQEE 197

Query: 181 QFKSFWSEGSQPRLAFE---FLLYSGLRCSDSCRAGVQHLQ-------NNIFSIKTQKTG 230
           +  SF       R  ++    LL +GLR S+ C   V+ L         +   IK  KTG
Sbjct: 198 KLLSFMRSDVCYRKYYDEVIILLRTGLRISEFCGLTVKDLDFTNRVINIDHQLIKLSKTG 257

Query: 231 TIIT----------VELPDGFMKLL------AMTPIG------KETFFINNDKQKMNATQ 268
            ++           + + D   +           P         +  FIN +     A  
Sbjct: 258 YVVQPPKSENGIRQIPMSDEVYQAFQNILKHRRKPKNLVIDGYSDFLFINRNGNPQVAVN 317

Query: 269 FSIWFKAKATKAGVNK-------SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-E 320
           +   F+    K            + H +R    T  A+AG     L    G   +     
Sbjct: 318 YETVFRKLVDKYNSKYEEPLPKITPHVMRHTFCTRLANAGMNPKALQYVMGHSNITITLN 377

Query: 321 TYTKG 325
            YT  
Sbjct: 378 LYTHA 382


>gi|191639031|ref|YP_001988197.1| Integrase [Lactobacillus casei BL23]
 gi|190713333|emb|CAQ67339.1| Integrase [Lactobacillus casei BL23]
 gi|327386275|gb|AEA57749.1| Type I restriction modification DNA specificity domain protein
           [Lactobacillus casei BD-II]
          Length = 308

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/283 (11%), Positives = 84/283 (29%), Gaps = 43/283 (15%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
            K  I  Y++    G++   +   ++     ++  + D    ++  +  +  +       
Sbjct: 12  FKQWIELYKE----GAVRAVTYQKYQMSHKHLVTLAPDLHMDELKRRTYQELINEF---- 63

Query: 131 SSAIQFLTSMRVLFKW-------AVRQEYVAINPCLSVERPKRKTEGIRP--WTKEDMQQ 181
            +A     +              A+ +  +  +P   V      +   +     + ++ +
Sbjct: 64  -AANHEKQTTLDFHHHLKAAILDALDEGILEQDPTRKVVIKGTVSRVHKVKFLNQHELTK 122

Query: 182 FKSFWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSIKTQKT---------- 229
             +           +  LL   +GLR  ++             ++   KT          
Sbjct: 123 LLALLDLDHGLDWDYFLLLIAKTGLRFGEALGVTPMDFDMAKLTLTINKTWDYKSATGSF 182

Query: 230 ----------GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK 279
                        +  ++   F   +   P  K   F+ + ++  N T   I  +    +
Sbjct: 183 AETKNTASVRKVPLDWQVAMQFATQIKSLPQDKP-IFVTDGQRVYNETANDILERK-CKR 240

Query: 280 AGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
           A +   S HG+R   A++   AG +   +    G   +   + 
Sbjct: 241 ANIPVISIHGLRHTHASLLLYAGVSVGSVARRLGHANMSTTQK 283


>gi|58580232|ref|YP_199248.1| phage-related integrase [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|188574950|ref|YP_001911879.1| site-specific recombinase, phage integrase family [Xanthomonas
           oryzae pv. oryzae PXO99A]
 gi|58424826|gb|AAW73863.1| phage-related integrase [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|188519402|gb|ACD57347.1| site-specific recombinase, phage integrase family [Xanthomonas
           oryzae pv. oryzae PXO99A]
          Length = 424

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 56/335 (16%), Positives = 95/335 (28%), Gaps = 61/335 (18%)

Query: 46  AYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII-- 103
           A+ SA                   TL++L   + +++ +  L  +++  +  Y D +   
Sbjct: 80  AFRSARLSELHAIAESRLRGDVRGTLRYLFDRFHEASEFKELQHDTQKDYRRYADTLANY 139

Query: 104 -----RKSGDFDYRKITTKHIRSGVESRKH-------------TPSSAIQFLTSMRVLFK 145
                 K G      ITT  ++  +E+  +             TPS A      +R    
Sbjct: 140 VRKDGSKLGGVQLEHITTPVVQRLLETFANGRPATRLQQALPPTPSKANHLYRYLRRTLA 199

Query: 146 WAVRQEYVAINPCLSVERPKRKT--EGIRPWTKEDMQQF------KSFWSEGSQPR---L 194
           W VR  Y   NP + V + K         P   E + QF          ++GS P     
Sbjct: 200 WGVRHGYCKENPAIGVLQAKEAKAFRMPTPDAFEAVLQFARERGALKPHTKGSFPSYLPP 259

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII----TVELPDGFMKLLAMT-- 248
                  + LR  + C     H   +      +K            + + +  LLA    
Sbjct: 260 VMVLAYSARLRGIEVCSLTDAHRLEHGVHASRRKGSRDTLTTWDAHMTEAWEALLARRSE 319

Query: 249 -------------PIGKETFFINNDKQK---MNATQFSIWFKAKATKAGVNK-----SAH 287
                           +  F I          +       F   A + GV K     S H
Sbjct: 320 ICNKPGRNFPIPMKPEERFFLIEQTGNPIVKSSLDSAWQRFIPAAIRDGVIKSEERFSLH 379

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           G++    T +              G  +    + Y
Sbjct: 380 GLKHRGVTDTEGNRGDK---QDAAGHVSSSMTDRY 411


>gi|29345486|ref|NP_808989.1| transposase [Bacteroides thetaiotaomicron VPI-5482]
 gi|29337378|gb|AAO75183.1| transposase [Bacteroides thetaiotaomicron VPI-5482]
 gi|295087238|emb|CBK68761.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A]
          Length = 410

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 47/266 (17%), Positives = 90/266 (33%), Gaps = 35/266 (13%)

Query: 90  NSRISF---ESYFDQIIR---KSGDFDYRKITTKHIRSGVESRKHT----PSSAIQFLTS 139
            +   +     +  + I+      DF   +IT   I       + T     ++  +F+  
Sbjct: 129 ATYRKYEVTRRHLAEFIQSKYNVSDFAINEITPMFITDFELYLRTTCKCGYNTTAKFMQF 188

Query: 140 MRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQQFKSFWSEGSQ---PRLA 195
            + +   A     +  +P  S + R ++   G    ++++++          +    R  
Sbjct: 189 FKRIILIARNNGILIGDPFASYKIRLEKVDRGY--LSEDEIKIILKKKMVSERLENVRDL 246

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQ-----NNIFSIKTQKTGTIITVELPDG----FMKLLA 246
           F F  ++GL   D       +++     N     K QKT T + V L D       K   
Sbjct: 247 FIFSCFTGLAYIDVANLTQDNIRKSFDGNLWIITKRQKTNTDVNVPLLDIPKMILKKYKG 306

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA-GAT 303
             P GK    I+N K        + + K  A   G+ K  + H  R   AT +  A G  
Sbjct: 307 NLPDGKILPVISNQK-------LNAYLKEIADVCGIKKNLTFHLARHTFATTTTLAKGVP 359

Query: 304 AHELMATYGWKTVDQAETYTKGADRI 329
              +    G   ++  + Y +  +  
Sbjct: 360 VETVSKMLGHTNIETTQIYARITNNK 385


>gi|85715942|ref|ZP_01046919.1| phage integrase [Nitrobacter sp. Nb-311A]
 gi|85697140|gb|EAQ35021.1| phage integrase [Nitrobacter sp. Nb-311A]
          Length = 433

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 48/324 (14%), Positives = 93/324 (28%), Gaps = 46/324 (14%)

Query: 46  AYMSA-----LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD 100
            Y  A       G   +       +    T+   + +Y         +  +R   +  FD
Sbjct: 79  DYWQAQDLARRWGEHQRLVAEGIIKPGSYTVANAVDDYMAEIE-AEKSPAARQGAKYVFD 137

Query: 101 QIIR-KSGDFDYRKITTKHIRSGVESRKHTPS---------------------------- 131
             +R   G     K+T   +          P                             
Sbjct: 138 AFVRPDLGAIQVEKLTADRLTRWRNKLATQPRRIRMKRTATEIATKPTPDDEDARRARKA 197

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPC-LSVERPKRKTEGI-RPWTKEDMQQFKSFWSEG 189
           SA + LT ++     A     ++ +     V+  KR  E + R  +  + ++  +  SE 
Sbjct: 198 SANRILTMLKAALNRAFHAGRISSDGAWRKVKPFKRVDEAVVRYLSAAEARRLVNACSED 257

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-KTGTIITVELPDGFMKLLAMT 248
            +  +    L  +G R ++  R   +    +  ++  +   G +  V L D         
Sbjct: 258 FRKLVQAALL--TGCRYAELARLKCRDFNADSGTVAVRLSKGRVRHVVLTDEGKAAFQAW 315

Query: 249 PIGKET---FFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGAT 303
              + T    FI  D      +      +  + +AG+    + H +R    +  A  G  
Sbjct: 316 TSDRTTADLVFIRADGAAWGTSHQKRPLEEASERAGITPAVTFHILRHTHGSHLAMNGVP 375

Query: 304 AHELMATYGWKTVDQAE-TYTKGA 326
              + A  G       E  Y   A
Sbjct: 376 MGVIAAQLGHADTRMTEKHYAHLA 399


>gi|301308315|ref|ZP_07214269.1| integrase [Bacteroides sp. 20_3]
 gi|300833785|gb|EFK64401.1| integrase [Bacteroides sp. 20_3]
          Length = 406

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 53/290 (18%), Positives = 98/290 (33%), Gaps = 37/290 (12%)

Query: 68  PTTL----KWLISEYRKSAHWGSLAVNSRIS--FESYFDQIIRKSGDFD-----YRKITT 116
           PTTL    +W     +K +       + R S  ++ Y    +   G  D       +   
Sbjct: 101 PTTLLQMGEWERERLKKHSEEIDSTSSYRSSMYYQKYLTNYLMSLGKKDIGLEEVTEDFG 160

Query: 117 KHIRSGVESRKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
           K  ++ ++  K+   S     L  +  L   AV +E + +NPC  +E   +     R  +
Sbjct: 161 KAYKAFLKRCKNFGASQTNHCLRWLNRLLYLAVDKEIIRVNPCEEMEYETKPEARHRYIS 220

Query: 176 KEDMQQFKS---FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-----FSIKTQ 227
           +E+ ++  S   +       R AF F   +GL   D       H+  N        I  +
Sbjct: 221 REEFKKILSTPMYDKRMELARRAFIFSTLTGLAYVDIMLLHPHHIGTNADGRRYIRINRK 280

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA--TQFSIWFKAKATKAGV--- 282
           KT     + L     ++L         +   +D+  +     + ++WF+    + GV   
Sbjct: 281 KTKIEAFIPLHPIAERIL-------SLYNTTDDEHPVFPLPNRDALWFEIH--ELGVIIG 331

Query: 283 ---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              N S H  R    T    +      +    G   +   + Y +  D  
Sbjct: 332 KEDNLSYHQSRHSFGTFLISSDIPIESIAKMMGHSNIRTTQGYARITDDK 381


>gi|289423927|ref|ZP_06425720.1| site-specific recombinase, phage integrase family
           [Peptostreptococcus anaerobius 653-L]
 gi|289155704|gb|EFD04376.1| site-specific recombinase, phage integrase family
           [Peptostreptococcus anaerobius 653-L]
          Length = 182

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/153 (21%), Positives = 53/153 (34%), Gaps = 9/153 (5%)

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITV 235
           ED+  +    +E  +  + F   LY+GLR SD  R  V+H++      +K +KTG    +
Sbjct: 14  EDILMYLEKTNE--RNYILFNLGLYTGLRISDILRLQVKHVRGKSNIRLKEKKTGKYKDI 71

Query: 236 ELPDGFMKLLAMTPIGKE----TFFINNDK-QKMNATQFSIWFKAKATKAGVNKS-AHGV 289
           ++     K+L     GKE      +   D  + M         K      GV  +  H +
Sbjct: 72  KINKRLKKVLDKYIEGKEDYQYLIYSKKDGVEPMTRQHAWKIIKETCMMFGVEHTGTHSL 131

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETY 322
           RK               L   +          Y
Sbjct: 132 RKTFGYHYYLKTKNIAVLQNIFNHSEPSVTLRY 164


>gi|159897174|ref|YP_001543421.1| integrase family protein [Herpetosiphon aurantiacus ATCC 23779]
 gi|159890213|gb|ABX03293.1| integrase family protein [Herpetosiphon aurantiacus ATCC 23779]
          Length = 328

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/283 (12%), Positives = 89/283 (31%), Gaps = 33/283 (11%)

Query: 87  LAVNSRISFESYFDQIIRKSG-----DFDYRKITTKHIRSGVESRKHT--PSSAIQFLTS 139
            + NS+ + E    ++    G        + ++  +H ++       +   ++A   L++
Sbjct: 35  QSTNSQRTMEKQLHRLATMMGFADAHAVPWSQLRVEHTQALWAKLASSKSAATANLILSA 94

Query: 140 MRVLFKWAVRQEYVA-INPCLSVERPKRKTEGI-----RPWTKEDMQQFKSFW-----SE 188
           +R + K A R   +   +   +V+    K         R  T  +++   +         
Sbjct: 95  LRGVLKMAWRMGLMTGEDYTRAVDLKTVKGNAPDAAAGRSLTAAELRALFAACAADSSPI 154

Query: 189 GSQPRLAFEFLL-YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE-----LPDGFM 242
           G +            GLR ++     +         +  +  G  +          +   
Sbjct: 155 GRRDAAILALAYAGGGLRRAEIVNLDLSDFNPETAMLTIRGKGNKVRTAYVRGGAREALD 214

Query: 243 KLLAMTPIGKETFF--INNDK------QKMNATQFSIWFKAKATKAGVNK-SAHGVRKFS 293
           + LA+        F  +          ++++     I  + +  +A V   S H +R+  
Sbjct: 215 EWLAVRGDEAGPLFWRLQAGGVAGQMYERLSDQAIYILCQRRGKEANVRHFSPHDIRRTF 274

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
            +   DAG     +    G    +    Y +  +R +    ++
Sbjct: 275 ISDQLDAGTDVLTVARLAGHSNANTTSRYDRRGERAKQAAADA 317


>gi|313903971|ref|ZP_07837351.1| integrase family protein [Eubacterium cellulosolvens 6]
 gi|313471120|gb|EFR66442.1| integrase family protein [Eubacterium cellulosolvens 6]
          Length = 361

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 51/337 (15%), Positives = 108/337 (32%), Gaps = 55/337 (16%)

Query: 41  STFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISE---YR----KSAHWGSLAVNSRI 93
             F   +  A + +      +           +L+     Y+    +      L   + +
Sbjct: 33  PAFARDFFRASSNTKSANTTLKYAYAIRIFFDFLVKSNPVYKNRSIRDLTLDDLDKVTAL 92

Query: 94  SFESYFDQII--RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQE 151
             E Y D +   + S D DY     K I+  +              +++RV + +  + E
Sbjct: 93  DLEEYMDYLKAYKNSEDSDYVTNGEKGIKQKM--------------SALRVFYAYYYKHE 138

Query: 152 YVAINPCLSVERPKRKTEGIRPWTKEDMQQF---------------KSFWSEG-SQPRLA 195
            +  NP + V+ PK   + I     +++                  +S+W +   +    
Sbjct: 139 MIRTNPTVLVDMPKLHEKEIIRLDADEVADLLDFVESCGEELSPHQRSYWEKSKLRDTAI 198

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQ---NNIFSIKTQKTGTIITV--ELPDGFMKLL----- 245
              LL +G+R S+     ++ +    N I   +      ++    E+       +     
Sbjct: 199 ITLLLGTGIRVSECVGLDLEDVDFRNNGIKVFRKGGNEMMVYFGGEVESALKAYIETERA 258

Query: 246 AMTPIGK--ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301
           A+TP        F +  ++++N        K   ++    K  + H +R    T      
Sbjct: 259 AITPQQGHEHALFYSAQRRRINVKSVENLVKKYTSRITSTKKITPHKLRSTYGTALYRET 318

Query: 302 ATAHELMATYGWKTVDQAE-TYTKGAD-RIRLGIKNS 336
              + +    G K V+  +  Y   +D R R   K  
Sbjct: 319 GDIYLVADVLGHKDVNTTKRHYAAMSDLRRRSAAKAV 355


>gi|225860049|ref|YP_002741558.1| integrase [Streptococcus pneumoniae Taiwan19F-14]
 gi|298229486|ref|ZP_06963167.1| integrase [Streptococcus pneumoniae str. Canada MDR_19F]
 gi|298255139|ref|ZP_06978725.1| integrase [Streptococcus pneumoniae str. Canada MDR_19A]
 gi|298501793|ref|YP_003723733.1| bacteriophage integrase [Streptococcus pneumoniae TCH8431/19A]
 gi|307126177|ref|YP_003878208.1| integrase [Streptococcus pneumoniae 670-6B]
 gi|225728040|gb|ACO23891.1| integrase [Streptococcus pneumoniae Taiwan19F-14]
 gi|298237388|gb|ADI68519.1| bacteriophage integrase [Streptococcus pneumoniae TCH8431/19A]
 gi|306483239|gb|ADM90108.1| integrase [Streptococcus pneumoniae 670-6B]
          Length = 388

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 51/298 (17%), Positives = 110/298 (36%), Gaps = 44/298 (14%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH 128
           T   L+  + ++    ++  ++ +  +   D  ++   G++   K+T   I+  V     
Sbjct: 69  TYAELVENWLETYC-HTVKKSTLMGTKFKIDKYLLPAFGNYRLDKLTPPIIQKQVNQWAK 127

Query: 129 TPSSAIQ------FLTSM-RVLFKWAVRQEYVAINPCLSVERPKRKTEG---IRPWTKED 178
             +   +       L S+ + + K+AV  + +  NP   V  P+RK +    ++    ++
Sbjct: 128 DYNQLGKGFQEYPLLHSLNKRILKYAVSLQAIPFNPARDVIVPRRKEKEGQKLKYLDDDN 187

Query: 179 MQQFKSFWS------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS--------- 223
           +++F ++        +     + ++ LL +GLR  +        +     +         
Sbjct: 188 LKKFLTYLEQLPNTYKNFYDTVLYKTLLATGLRIRECLALKWSDIDLKNGTLDVNKTLNI 247

Query: 224 ---IKTQKTGTIITVELPDGFMKLL------AMTPIGKET------FFINNDKQKMNATQ 268
              I   KT + I V   D    L+        + IGKE        F N+  + ++A  
Sbjct: 248 IKEITGPKTKSSIRVIDLDNKTVLMLRLYKARQSQIGKEMGLTYEKVFSNSFDKHIDARM 307

Query: 269 FSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
            S        +AG  + + H  R   A+I  +AG    E+    G   +    + Y+ 
Sbjct: 308 LSFRLVKHLERAGCPRFTFHAFRHTHASILLNAGLPYKEIQTRLGHAKLSMTMDIYSH 365


>gi|182419648|ref|ZP_02950893.1| site-specific recombinase, phage integrase family protein
           [Clostridium butyricum 5521]
 gi|237665886|ref|ZP_04525874.1| site-specific recombinase, phage integrase family [Clostridium
           butyricum E4 str. BoNT E BL5262]
 gi|182376538|gb|EDT74115.1| site-specific recombinase, phage integrase family protein
           [Clostridium butyricum 5521]
 gi|237658833|gb|EEP56385.1| site-specific recombinase, phage integrase family [Clostridium
           butyricum E4 str. BoNT E BL5262]
          Length = 317

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/232 (17%), Positives = 79/232 (34%), Gaps = 20/232 (8%)

Query: 108 DFDYRKITTKHIRSGVE----SRKHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVE 162
           DF  R I   HI+  ++      K+ P +  Q L S+R++ K+       +  N  L V 
Sbjct: 77  DFSIRDIREIHIQEFLDFSYNVMKNKPITINQKLVSLRMIMKYICKYYNVLPYNIALMVP 136

Query: 163 RPKRKTEGIRPWTKEDMQQFKSFWSE---GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN 219
           + K  +      +  D+++  S   E   G +     + ++ +G++ +      V  +  
Sbjct: 137 KLKIDSVKPTSISYSDIKKILSILREKNYGIRDVCICKIIMTTGMKITSVFNMKVNDVDL 196

Query: 220 NIFSIKTQKTGTIITVELPDGF-------MKLLAMTPIGKETFFINNDKQKMNATQFSIW 272
           N   ++    G      + D         M   +         F+N+  +  N   F I 
Sbjct: 197 NNRLLRYNNLGKEFFYPIQDTLYNDLCSYMDFRSSINPKCNNLFVNSSGKPKNIRSFQIA 256

Query: 273 FKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           F+    KA ++   +A  +R              +EL            + Y
Sbjct: 257 FRNAVIKADLDEAYTAQNLRASFLYEMGRILNDENELSEL---TDQKIVKQY 305


>gi|29347898|ref|NP_811401.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
 gi|253572491|ref|ZP_04849893.1| integrase [Bacteroides sp. 1_1_6]
 gi|29339800|gb|AAO77595.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
 gi|251837906|gb|EES65995.1| integrase [Bacteroides sp. 1_1_6]
          Length = 315

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 52/298 (17%), Positives = 106/298 (35%), Gaps = 37/298 (12%)

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIR--KSGDFDYRKITT---KHIRSGVESRKHTPSSA 133
           R+S ++G     +   + S    I+   +SG+  +RK+T    K   + +  R  + ++ 
Sbjct: 16  RESGNYG-----TAHIYRSSMSAILAFNESGNLPFRKVTPEFLKSFEAYLRGRNCSWNTV 70

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI--RPWTKEDMQQFKSFWS---- 187
             ++ ++R ++  AV +      P          T     R   KEDM++          
Sbjct: 71  STYMRTLRAVYNRAVDRRIAPYVP-HHFRYVYTGTRADKKRALEKEDMERLMKDIPKQLH 129

Query: 188 ----EGSQPRLAFEFL-LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
               E  + R  F  + L  G+   D        +  N+ + + +KTG ++TV L    +
Sbjct: 130 SGNRELQRARGFFILMFLLRGMPFVDLAYLKKHDIDGNVLTYRRRKTGRMLTVTLLPEAV 189

Query: 243 KLLAMTPIGKETF------FINNDKQKMNATQFSIWFKAK-------ATKAGV--NKSAH 287
           KL+         F        + +  +    ++ +  +             G+  + S++
Sbjct: 190 KLIKQHMNTDPAFPYLFSLISSKEGTEEAYKEYQLALRNFNYQLMILKQVLGLTTDLSSY 249

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345
             R   AT++         +    G  ++   ETY K     ++   N    SS   S
Sbjct: 250 TARHTWATMAYYCEVHPGVISEAMGHSSITVTETYLKPFKNKKIDEANVMVFSSFRKS 307


>gi|238751100|ref|ZP_04612596.1| Prophage DLP12 integrase [Yersinia rohdei ATCC 43380]
 gi|238710790|gb|EEQ03012.1| Prophage DLP12 integrase [Yersinia rohdei ATCC 43380]
          Length = 275

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 42/248 (16%), Positives = 82/248 (33%), Gaps = 28/248 (11%)

Query: 96  ESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWA-VRQEYVA 154
             + D    K+G           +         + S+  + L  M+ + + A    +++ 
Sbjct: 4   RKHRDNWESKAGSLR----RRGELVEPFVEVPVSISTKAKHLALMKAIMRAAERDWKWIE 59

Query: 155 INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGV 214
             P   ++ P+ +   +R     +  +  +  SE  +  + F     +GLR S+      
Sbjct: 60  RGPV--IKVPQERGRRVRWLEPHEAIRLINECSEPLKSIVVFALA--TGLRRSNIVDLQW 115

Query: 215 QHLQNN----IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM-----N 265
           Q +           +  K+G  I V L D   K+L    IG+ + F+             
Sbjct: 116 QDVDLQRKVSWIHPEESKSGQAIGVALNDMSCKVLREQ-IGRHSRFVFVHTSAWHRADGT 174

Query: 266 ATQFSIWFKAKATKA---GVNKS------AHGVRKFSATISADAGATAHELMATYGWKTV 316
            T      +     A   G+ +S       H +R   A+    AG     L    GW+++
Sbjct: 175 KTAEVRKMRVDDNTAWRTGLKRSGITDFRFHDLRHTWASWLVQAGVPLSALQEMGGWESI 234

Query: 317 DQAETYTK 324
           +    Y  
Sbjct: 235 EMVRRYAH 242


>gi|269797506|ref|YP_003311406.1| integrase family protein [Veillonella parvula DSM 2008]
 gi|269094135|gb|ACZ24126.1| integrase family protein [Veillonella parvula DSM 2008]
          Length = 403

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 45/357 (12%), Positives = 106/357 (29%), Gaps = 60/357 (16%)

Query: 44  IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QI 102
           +  Y          ++  +    K T LK + + + +     S+   +   ++S     I
Sbjct: 46  LEVYKLGKQWIEATQQNTSIFSSKNTKLKDICNYWLQDVKKVSVKPKTFQKYDSTLRLYI 105

Query: 103 IRKSGDFDYRKITTKHIRSGVESRKH-----------TPSSAIQFLTSMRVLFKWAVRQE 151
           +   G+     IT + +++ + +  +           + S+       +  LF++AV   
Sbjct: 106 LPLLGEIKIASITPQQVQTVLNNWSNGTLKGKKGHIISSSTIRCTRRYLSELFEYAVNIG 165

Query: 152 YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS------EGSQPR-------LAFEF 198
            +  NP    + P+  T  I   + +++ Q  S           S  R       +A + 
Sbjct: 166 LLLKNPIKLTKAPRLITTEIHTLSLDEIHQLTSTMKQQVSNNISSPYRINYYSSYIATKI 225

Query: 199 LLYSGLRCSDSCRAGVQHLQN--NIFSIK---TQKTGTIIT-----------VELPDGFM 242
            L +G+R  +        +       S++      T   I            + +     
Sbjct: 226 ALGTGMRLGEVFGLCWDCVDLIHGHISVRRTIQTGTKGQIFQDTKTKTSRRCIPISQELQ 285

Query: 243 ---------------KLLAMTPIGKETFFINNDKQKMNATQFSIW-FKAKATKAGVNK-S 285
                          +L                 + ++ + F    F     +  ++  +
Sbjct: 286 SELTTYKEFQSNYAKELGDKWTDSYGVVISGTFGKILSTSNFKSRYFIPILKQLNLDHIT 345

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGA-DRIRLGIKNSRRIS 340
            H +R   AT+          +    G  T+    +TY+    D  +  +K    + 
Sbjct: 346 FHDLRHTHATLLLSQKINPKIVQERLGHSTITLTLDTYSHLVPDIQKEAVKALDNLG 402


>gi|153011004|ref|YP_001372218.1| phage integrase family protein [Ochrobactrum anthropi ATCC 49188]
 gi|151562892|gb|ABS16389.1| phage integrase family protein [Ochrobactrum anthropi ATCC 49188]
          Length = 444

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/236 (12%), Positives = 67/236 (28%), Gaps = 26/236 (11%)

Query: 106 SGDFDYRKITTKHIRSGVESRKHTPS--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163
            G+     +  + +   +++ K   +   A +    +R + +WA  +  +  N   ++ +
Sbjct: 159 IGNVKLSDLHRRDLTKCIDALKDRGAHVEANRLFEDIRAMVRWARGRGDLDENLTENMRK 218

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNN 220
           P       R  T+++++       +       R      L +G R  +      + L ++
Sbjct: 219 PTETAPRERWLTEDEIKIVWKALPDADMRESTRRIIRLCLITGQRVGEVSGMTREELSDD 278

Query: 221 IFSIK----TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK-------------QK 263
                      K      V L    M+++       E       +               
Sbjct: 279 ATLWTIPGERAKNKQQHKVPLSSLAMQIILEQQADVEALAARKGRDVPDEIFPSPGFHGP 338

Query: 264 MNATQFSIWFKAKATKAGV----NKSAHGVRKFSATISADAGATAHELMATYGWKT 315
             A       K       V      + H +R+  AT     G + H +       +
Sbjct: 339 AGADSIPKALKRLDVNGNVLGVPAWTPHDLRRTCATHMEMLGVSPHVIGHCLNHIS 394


>gi|126461068|ref|YP_001042182.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17029]
 gi|126102732|gb|ABN75410.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17029]
          Length = 354

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 56/249 (22%), Positives = 87/249 (34%), Gaps = 25/249 (10%)

Query: 97  SYFDQIIRKSGD-FDYRKITTKHIRSGVESR--KHTPSSAIQFLTS-MRVLFKWAVRQEY 152
            Y D+II+  G  F    +    +     +      P++  + L + +  ++  A     
Sbjct: 75  RYLDRIIKHFGPRFRIADLDNDAVNRASIALYPNAAPATINRQLVTPISAVYSLAADDGK 134

Query: 153 VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRA 212
                     R        R  T E+ ++  +       P +AF  LL +G R  ++   
Sbjct: 135 APP---RRFRRRPEPKALPRWLTPEEAERLLAACDRRLLPLVAF--LLGTGCRTGEALGL 189

Query: 213 GVQH--LQNNIFSIKTQKTGTIITVELPDGFMKLLAM-----------TPIGKETFFINN 259
            VQH  ++     +   K G    V  P    ++LA            TP G+    +N 
Sbjct: 190 AVQHLHIETRQAHVGITKNGDGKMVSFPTRTKRILAACGLPEAGAVFRTPKGRPYRLVNG 249

Query: 260 DKQKMNATQFSIWFKAKATKA--GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVD 317
           D QK+        F A  T A  G + + H +R   AT           LM   GWK  D
Sbjct: 250 DGQKLGGQ-IKGAFDAARTAAKLGEDVTPHTLRHTFATWHYAVNKDLILLMERGGWKRAD 308

Query: 318 QAETYTKGA 326
            A  YTK A
Sbjct: 309 LAIGYTKLA 317


>gi|331091918|ref|ZP_08340750.1| hypothetical protein HMPREF9477_01393 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330402817|gb|EGG82384.1| hypothetical protein HMPREF9477_01393 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 413

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 51/346 (14%), Positives = 98/346 (28%), Gaps = 73/346 (21%)

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVESR- 126
            T+ ++   Y  +     L   +R +++  +D+ +R   G      I    +        
Sbjct: 71  ATVNFVFDRYISTK--SELRATTRTNYKYMYDRFVRNGFGKKKIATIKFSDVLQFYHHLL 128

Query: 127 KHTPSSAIQ---FLTSMRVLFKWAVRQEYVAINPCLSV-----ERPKRKTEGIRPWTKED 178
           K             T +   F+ AVR   +  NP   V     + P R        T E 
Sbjct: 129 KDKKIQVNTLEIIQTVLHPTFQLAVRDNIIRNNPSDGVMAQIKKLPGRNHGIRHALTLEQ 188

Query: 179 MQQFKSFWSEGSQPRLA---FEFLLYSGLRCSDSCRAGVQHLQNNI-------------- 221
            + F  +  E  +       F+FLL +G R  ++     + +                  
Sbjct: 189 QRAFIRYVEENEKFESWVTLFKFLLGTGCRIGEAVGIRWEDIDFKKRIISINHSLVYYSR 248

Query: 222 ---------FSIKTQKTGTIIT-VELPDGFMKLLAM------------TPIGKET--FFI 257
                    FSI   KT   I  + + D   + L              T I   T   F 
Sbjct: 249 EYKEHSTCSFSISLPKTEAGIRIIPMMDTVYEALKKEYAFQEENGFNETEIDGMTGFVFS 308

Query: 258 NNDKQKMNATQFSIWFKAK---------ATKAGVNK--------SAHGVRKFSATISADA 300
           N      N    +   K              A   +        S H +R    +   + 
Sbjct: 309 NRFGNVHNPQAINRAIKRIYEAYNAEEVVKAAKEKREPILIPHFSCHHLRHTFCSRFCEN 368

Query: 301 GATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVVDS 345
                 + +  G   ++   + Y +  +  +   ++ + ++  +D 
Sbjct: 369 ETNLKVIQSIMGHADIETTMDIYAEVTETKK--YESIQELARKLDV 412


>gi|320333468|ref|YP_004170179.1| integrase family protein [Deinococcus maricopensis DSM 21211]
 gi|319754757|gb|ADV66514.1| integrase family protein [Deinococcus maricopensis DSM 21211]
          Length = 350

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 42/312 (13%), Positives = 81/312 (25%), Gaps = 49/312 (15%)

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYR 112
                       ++  TL   ++ Y        L   +    E +       + GD    
Sbjct: 29  RAATPSSAQGRDQRDITLTAWLTGYV-DGRREELQPGTLGKLEWHVALTQGHEVGDTPLG 87

Query: 113 KITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170
           ++T   + +        H  S+       ++   + AVR E +  NP  + E P+ +   
Sbjct: 88  RLTPARLEAFYRHLMAGHKRSTVGDVAGLVKRALRRAVRHEIIPNNPADATELPRGRR-- 145

Query: 171 IRPWTKEDMQQFKSFWSEGSQPRLA-----------FEFLLYSGLRCSDSCRAGVQH--- 216
                  D ++       G   RL            +   L  GLR  +      +    
Sbjct: 146 ------ADRERVAQILQAGDVQRLVKAAREDTLWPLWHLALSCGLRHGELLGLQWRDLSW 199

Query: 217 ------LQNNIFSIKTQKT-------GTIITVELPDGFMKLLAMTPIGKET-------FF 256
                 +   +  +  + T        +   + LP   +  L       E         F
Sbjct: 200 AHQELSINRTVIVVNNRPTVGSPKTSSSERAIPLPGEVIATLRAWQTNPERPHSADGWLF 259

Query: 257 INNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWK 314
                  +        +K    +AG+  S   H +R   A++    G     +    G  
Sbjct: 260 CTASGTPLLQNNVRRSWKRLLGRAGLPNSIRIHDLRHTYASMLIAHGIDPRTVSDLLGHS 319

Query: 315 TVD-QAETYTKG 325
                   Y   
Sbjct: 320 DTRFTLSHYVHS 331


>gi|308184464|ref|YP_003928597.1| integrase-recombinase protein [Helicobacter pylori SJM180]
 gi|308060384|gb|ADO02280.1| integrase-recombinase protein [Helicobacter pylori SJM180]
          Length = 356

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/191 (14%), Positives = 67/191 (35%), Gaps = 22/191 (11%)

Query: 167 KTEGIRPWTKEDMQQFKS-------FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-- 217
             +       E++++F              ++ RL  + ++++G+R +++ +  ++    
Sbjct: 162 GNKLPTHLNNEELEKFLEGIDKIEMSAKVRARNRLLIKIIVFTGMRSNEALQLKIKDFTL 221

Query: 218 QNNIFSIKTQKTGTIITVELPDG------FMKLL---AMTPIGKETFFINNDKQKMNATQ 268
           +N  ++I  +  G      +           + L    + P+  +  F N     +    
Sbjct: 222 ENGCYTILIKGKGDKYRAVMLKAFHIESLLKEWLIERELYPVKNDLLFCNQKGMALTQAY 281

Query: 269 FSIWFKAKATKAGVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
                +     AG+ +    AH +R   AT+          +    G  +++ +  YT  
Sbjct: 282 LYKQVERIINFAGLRREKNGAHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTH- 340

Query: 326 ADRIRLGIKNS 336
            D+ RL    S
Sbjct: 341 FDKERLKEAAS 351


>gi|288924290|ref|ZP_06418310.1| integrase family protein [Frankia sp. EUN1f]
 gi|288344362|gb|EFC78871.1| integrase family protein [Frankia sp. EUN1f]
          Length = 358

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 39/326 (11%), Positives = 90/326 (27%), Gaps = 57/326 (17%)

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISF---ESYFDQIIRKSGDFD 110
             P     + P+        L++ +  S      A N+R  +      F   +    D  
Sbjct: 11  RQPGGPLSHGPQVDDPMWGLLLATWDLSLESAGRAANTRRIYLHAGRLFVAWLLALPDEP 70

Query: 111 ------------------YRKITTKHIRSGVESRKHTPSS----------AIQFLTSMRV 142
                                IT +H+   + + + TP+             Q   +++ 
Sbjct: 71  GSDTVDAHGRPVLPRPAGPEDITRQHVEGFLVAFRTTPTPRCPNGPGQAYVNQIYRALQQ 130

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-------------- 188
                + +E +  +P   ++ PK         T + ++   +                  
Sbjct: 131 WMGHLLDEEDIDRSPMERIKAPKIDQTIKPELTDDHVKALLATCKAIKTGHAKLDKRARY 190

Query: 189 -GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE----------L 237
             ++ +      L  G R ++     +  +  ++ +IK    G    +            
Sbjct: 191 VAARDQALIRVFLDLGARRAEVAGMTLPDVDLHLRTIKVTGKGGRDRLPGIGQTTALALA 250

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS-AHGVRKFSATI 296
               ++           +   N ++ +  +      + +    G   +  H  R+  A  
Sbjct: 251 KYQRLRAEKQAAASAAYWLDENGRKPLTHSGLGQLIERRGQLIGRPGTHWHEFRRKLADD 310

Query: 297 SADAGATAHELMATYGWKTVDQAETY 322
             D G     LM   GW + +  E Y
Sbjct: 311 WLDNGGDRGALMVHAGWTSHEMVERY 336


>gi|238019177|ref|ZP_04599603.1| hypothetical protein VEIDISOL_01041 [Veillonella dispar ATCC 17748]
 gi|237863876|gb|EEP65166.1| hypothetical protein VEIDISOL_01041 [Veillonella dispar ATCC 17748]
          Length = 380

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 57/365 (15%), Positives = 124/365 (33%), Gaps = 50/365 (13%)

Query: 10  FVTKERTRHGKIIYYF-------RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62
           ++ + R ++G I Y +         G  +R+ +     +  +   M  +          N
Sbjct: 2   YIDERRQKNGTISYRYGENYKDPLTGKNKRVSVTSTKNTKAVQKEMQRILNDRINEILTN 61

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHIRS 121
           S   K  T+K L  E+      G   V ++ + E +   ++R   GD     +   +I+ 
Sbjct: 62  SVSSKTLTIKDLTDEFVTIDK-GLRKVTTQQNIEDHAKALLRWIEGDILVVNLKAIYIQR 120

Query: 122 GVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS---VERPKRKTEGI----- 171
            +     + + +   +  + ++ + K+  R  Y+     L    ++RP R TE +     
Sbjct: 121 MLNKVLLEKSFNYVKRVYSVLKQVLKYGKRMGYINDVSYLDDVILKRPPRTTEEMTKARE 180

Query: 172 RPWTKEDMQQFK-SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
           +  TK++++ F  +   +  +  L FEF   +GLR  +     V+   +    I    T 
Sbjct: 181 KFLTKDELKTFLTALAKKNQRVALLFEFQALTGLRIGELRALRVKDYNSKNEYIDVNATL 240

Query: 231 TIITVELPD---------------------------GFMKLLAMTPIGKETFFINNDKQK 263
           T+  + +P                               +++          F+ +    
Sbjct: 241 TVDGLRIPPKNEYSVRRVQLNKRARHILSTFIQLNHSRKQIMQHYKNDDNYIFVTDGGVP 300

Query: 264 MNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETY 322
            ++   +   K+ +    V  + H  R    ++ A+       +MA  G          Y
Sbjct: 301 YDSHYLNKLLKSVSFNKTV--TTHTFRHTHISLLAEKQTPLKTIMARVGHNEPKTTLSIY 358

Query: 323 TKGAD 327
           T   D
Sbjct: 359 THVTD 363


>gi|254524378|ref|ZP_05136433.1| phage-related integrase [Stenotrophomonas sp. SKA14]
 gi|219721969|gb|EED40494.1| phage-related integrase [Stenotrophomonas sp. SKA14]
          Length = 337

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 46/313 (14%), Positives = 93/313 (29%), Gaps = 67/313 (21%)

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII-------RKSGDFDYRKITTKHIRS 121
            T+ ++I ++ KS  +  L   ++  ++ Y   I           GD    ++T   IR 
Sbjct: 11  GTIAYVIDQHAKSLAFAQLGPKTQQGYKEYAAAIKVYPLKNGTSLGDAVVDRLTPGFIRR 70

Query: 122 GVESRKHT--------------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167
            ++                   P+ A  +L  +R +F WA   ++V  NP   +++ K K
Sbjct: 71  LIDVIAMGRPGQKPGEADTPGYPTKANHWLRYLRRVFGWAREHDHVTTNPAAGIKQVKEK 130

Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPR-------------LAFEFLLYSGLRCSDSCRAGV 214
            +        D+ +    +++    R              A E    + LR  +      
Sbjct: 131 AD--HRMPPADVFRRVQAYAKNCSARGPRAKGAVPAYLWAAMELAYQARLRGIEVLTLTD 188

Query: 215 QHLQNNIFSIKTQKTG----------TIITVELPDGFMKLLAMTPIG-------KETFFI 257
            H++  +     +K            T   + L       +     G            +
Sbjct: 189 AHVEGELLRTNRRKGSRDNLVRKGAETEEAIALLRARRAAIWSKRGGVVPVLAENRYLLV 248

Query: 258 NNDKQKMNATQ---FSIWFKAKATKAGVNKS-----AHGVRKFSATISADAGATAHELMA 309
           + D +++               A K G+ +       H ++    T       T  +   
Sbjct: 249 SEDGERLTEAGWQTAWGRMMRNAVKDGILRQDERFGLHSLKHRGVTD------TRGDKKT 302

Query: 310 TYGWKTVDQAETY 322
             G KT      Y
Sbjct: 303 ASGHKTDAMIHVY 315


>gi|167764527|ref|ZP_02436648.1| hypothetical protein BACSTE_02916 [Bacteroides stercoris ATCC
           43183]
 gi|167697196|gb|EDS13775.1| hypothetical protein BACSTE_02916 [Bacteroides stercoris ATCC
           43183]
          Length = 245

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/206 (16%), Positives = 68/206 (33%), Gaps = 19/206 (9%)

Query: 135 QFLTSMRVLFKWAVRQEY--VAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FWSE 188
            +L++ R ++  A +Q       NP   +   +R+    R  +KE++    S     + +
Sbjct: 1   MYLSNFRAVYNKARKQGIRVCGENPFAGLN-VRRQETVKRALSKEEIALIASADLRRYPQ 59

Query: 189 GSQPRLAFEFLLYS-GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
               R  F F  Y  G+   D  R     +  +       KTG  + + L     +++  
Sbjct: 60  LEAARDLFMFSFYCRGMSFVDVIRLKHDGIVRDTIFYTRSKTGQRLQIGLLPAMKEIIEK 119

Query: 248 TPIGKETFFINNDKQ---------KMNATQFSIWFKAKATKA--GVNKSAHGVRKFSATI 296
                   F     Q         + +    + + K   T    G+  + +  R   ATI
Sbjct: 120 YRTSGPYIFPYIHGQSPRDAYTQYRYSLGTVNRYLKRLGTLLNIGIPLTTYVARHSWATI 179

Query: 297 SADAGATAHELMATYGWKTVDQAETY 322
           + + G     +    G  +    + Y
Sbjct: 180 AKNEGIPISLISEGLGHTSEKTTQIY 205


>gi|148993582|ref|ZP_01823053.1| Integrase [Streptococcus pneumoniae SP9-BS68]
 gi|147927803|gb|EDK78825.1| Integrase [Streptococcus pneumoniae SP9-BS68]
          Length = 324

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 51/298 (17%), Positives = 110/298 (36%), Gaps = 44/298 (14%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH 128
           T   L+  + ++    ++  ++ +  +   D  ++   G++   K+T   I+  V     
Sbjct: 5   TYAELVENWLETYC-HTVKKSTLMGTKFKIDKYLLPAFGNYRLDKLTPPIIQKQVNQWAK 63

Query: 129 TPSSAIQ------FLTSM-RVLFKWAVRQEYVAINPCLSVERPKRKTEG---IRPWTKED 178
             +   +       L S+ + + K+AV  + +  NP   V  P+RK +    ++    ++
Sbjct: 64  DYNQLGKGFQEYPLLHSLNKRILKYAVSLQAIPFNPARDVIVPRRKEKEGQKLKYLDDDN 123

Query: 179 MQQFKSFWS------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS--------- 223
           +++F ++        +     + ++ LL +GLR  +        +     +         
Sbjct: 124 LKKFLTYLEQLPNTYKNFYDTVLYKTLLATGLRIRECLALKWSDIDLKNGTLDVNKTLNI 183

Query: 224 ---IKTQKTGTIITVELPDGFMKLL------AMTPIGKET------FFINNDKQKMNATQ 268
              I   KT + I V   D    L+        + IGKE        F N+  + ++A  
Sbjct: 184 IKEITGPKTKSSIRVIDLDNKTVLMLRLYKARQSQIGKEMGLTYEKVFSNSFDKHIDARM 243

Query: 269 FSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
            S        +AG  + + H  R   A+I  +AG    E+    G   +    + Y+ 
Sbjct: 244 LSFRLVKHLERAGCPRFTFHAFRHTHASILLNAGLPYKEIQIRLGHAKLSMTMDIYSH 301


>gi|268611921|ref|ZP_06145648.1| hypothetical protein RflaF_20741 [Ruminococcus flavefaciens FD-1]
          Length = 310

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/277 (12%), Positives = 89/277 (32%), Gaps = 35/277 (12%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT-- 129
           +WL+  Y++    GS+   +   +    + + +   D           +  +     T  
Sbjct: 16  QWLVI-YKE----GSVRGVTMQKYHLTAEWVKKLIPDVKLCDFDRITYQQLINDYAETHE 70

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV----ERPKRKTEGIRPWTKEDMQQFKSF 185
             + + F   ++     AV    +A +P   V    + P  K +     ++ ++Q+  + 
Sbjct: 71  RQTTMDFHHQLKGAILDAVDDGLIARDPTRKVIIKGKSPNDKKKKY--LSRYELQKLLTN 128

Query: 186 WSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQ--------------NNIFSIKTQKT 229
               S   + +  LL   +G+R S++                             +  K 
Sbjct: 129 LDLNSGLNMDWLILLIAKTGMRFSEAIAVTPVDFDFTHQTLSVNKTWDYKGEGGFQPTKN 188

Query: 230 GTIITVELPDGFMK----LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284
            + +     D         +          F++ +K+  N+T  +   +      G+   
Sbjct: 189 KSSVRKIRLDWQTVGQFYAIVRELNDTAPIFVSKEKKIYNST-LNDVLERHCKAVGIPTI 247

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
           S HG+R   A++    G +   +    G  +++  + 
Sbjct: 248 SVHGLRHTHASLLLFDGVSIASVAQRLGHSSINTTQK 284


>gi|255008541|ref|ZP_05280667.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           3_1_12]
 gi|313146270|ref|ZP_07808463.1| transposase [Bacteroides fragilis 3_1_12]
 gi|313135037|gb|EFR52397.1| transposase [Bacteroides fragilis 3_1_12]
          Length = 404

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 41/269 (15%), Positives = 88/269 (32%), Gaps = 23/269 (8%)

Query: 90  NSRISFESYFDQIIRKSGDFDYRKIT-----TKHIRSGVESRKHTPSSAIQFLTSMRVLF 144
            +  ++ S         GD  +                + +R + P++   +L   R ++
Sbjct: 130 GTAANYRSARRAFELFVGDRPFSFEELTPEVIDRFADFLRNRGNQPNTISFYLRQWRAIY 189

Query: 145 KWAVRQEYVAIN--PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP-----RLAFE 197
             A     V  +  P   +   K +    R  ++E + + +      S+      R  F 
Sbjct: 190 NRACADHLVYTDQKPFRRLN-LKEEVTAKRAISREKIARIEQVDLTASRADMQLARDLFL 248

Query: 198 FLLYS-GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFF 256
           F  Y+ G+   D C    ++LQ +    K QKTG  + + + +G  +L+         + 
Sbjct: 249 FSFYTRGMSFVDMCYINKENLQGDYLCYKRQKTGQELRIRIENGLSELIDRYADSSSDYL 308

Query: 257 INNDKQKMNATQFSIWFKA---KATKAG------VNKSAHGVRKFSATISADAGATAHEL 307
           +   ++  +   +    +    +  + G      V  + +  R   AT++         +
Sbjct: 309 LPMLRRGDSYQDYRRQQRKLNKQIRELGDRLRLEVPLTFYVARHSWATLAHANDVPVSVI 368

Query: 308 MATYGWKTVDQAETYTKGADRIRLGIKNS 336
               G  +      Y    D  RL   N 
Sbjct: 369 SDCMGHTSEKTTRIYLDRIDTTRLDKANR 397


>gi|229119225|ref|ZP_04248533.1| Integrase-recombinase [Bacillus cereus Rock1-3]
 gi|228664222|gb|EEL19755.1| Integrase-recombinase [Bacillus cereus Rock1-3]
          Length = 390

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/180 (16%), Positives = 61/180 (33%), Gaps = 24/180 (13%)

Query: 167 KTEGIRPWTKEDMQQFKSFWSE--GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFS 223
           +    R  + +++ +   F+ E            L  +G R  + C A V+ L  +  + 
Sbjct: 191 QDRPNRDLSYDEVMKILGFYKEQGHLVNYTILLALASTGARIQELCTARVKDLHYDGKYW 250

Query: 224 IKTQKTGTIIT-VELPDGFMKLLAMTPIGK-----------ETFFINNDKQKMNATQFSI 271
           +K    G  +  + +P+   + ++     +              FIN      N    S 
Sbjct: 251 LKVTGKGDKVRELFIPEHLFQCISEMRRRRGFQTVLNRGDESPVFINQRGNFYNPKTLSN 310

Query: 272 WFKAKATKAGVN--------KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETY 322
                  K  ++         +AH  R   A ++ + G A  + LM T G + +   + Y
Sbjct: 311 QVTDMIKKTNLDFLKYRENTVTAHTFRHAFAIMAVEQGNADLYHLMQTLGHENIQTTKIY 370


>gi|58337198|ref|YP_193783.1| integrase [Lactobacillus acidophilus NCFM]
 gi|227903780|ref|ZP_04021585.1| integrase [Lactobacillus acidophilus ATCC 4796]
 gi|58254515|gb|AAV42752.1| integrase [Lactobacillus acidophilus NCFM]
 gi|227868667|gb|EEJ76088.1| integrase [Lactobacillus acidophilus ATCC 4796]
          Length = 316

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 39/299 (13%), Positives = 93/299 (31%), Gaps = 36/299 (12%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKH 128
                  +  +      +  + + +E+ + ++    G     K+T K  +  +    +KH
Sbjct: 17  FADYFKSWYGTYKIPGKSRTTVVRYETIYKKLNAYYGKAKLAKVTRKSYQIFMNEYGKKH 76

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV--ERPKRKTEGIRPWTKEDMQQFKSFW 186
              +  +   S+R   +  V    +  +    +       +T  I     E++Q  K+  
Sbjct: 77  AKDTVYKTNGSIRSCVRDGVADGIIQKDFTQKINLTWNSERTRKIDYLNYEEIQSLKNSL 136

Query: 187 SEGSQP----RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK-------------- 228
               +     R      LY+G+R  +        +     +I   K              
Sbjct: 137 LHNIKHTYISRYMILTALYTGMRPGEIAVLTWSDIDFKNQTININKSYNHDKGRVDNYDS 196

Query: 229 ---------TGTIITVELPDGFMKLLAMTP-IGKETFFINNDKQKMNATQFSIWFKAKAT 278
                    T ++  +++   F+ +L+       E  FI  D     +   +  ++ +  
Sbjct: 197 SEIDKSTKNTNSVRIIKVDKKFLDILSQLKQNDHEKIFIGKDGTIPTSNAVNKVWRKQLE 256

Query: 279 KAGVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADRIRLGI 333
           K  ++K     H VR     +    G   + +    G   +   A+ Y    D ++  +
Sbjct: 257 KLNIDKPSFHFHSVRHTHVALLPFKGVPLYAISKRLGHANMSTTAKKYAYMLDELKQQV 315


>gi|53715513|ref|YP_101505.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|52218378|dbj|BAD50971.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
          Length = 217

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 42/199 (21%), Positives = 71/199 (35%), Gaps = 14/199 (7%)

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE 197
           ++ R +   A R   +  NP   ++R +         ++E++ +      E    + AF 
Sbjct: 11  SAFRAVLHAAYRDGKIKENPNGFLDRIESIPTIREHLSQEELIRLAETPYEEEVLKRAFL 70

Query: 198 FLLYSGLRCSDSCRAGVQHLQ---NNIFSIKT--QKTGTIITVELPDGFMKLLAMTPIGK 252
           F   +GLR SD  +   Q +Q   N    + T  QKT  I+   + D    LL       
Sbjct: 71  FSCLTGLRKSDIKQLTWQQIQPYTNGKMFVTTRMQKTKQIVHNPISDEAYGLLGE---RC 127

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMAT 310
           E       K KM         K     AG+ K  + H       ++  + G     + A 
Sbjct: 128 EGLIFAGFKDKM----LQGPLKRCLLAAGITKKITFHCTWHSFGSLHVEMGMDMAVIQAY 183

Query: 311 YGWKTVDQAETYTKGADRI 329
              K +   + Y+K A + 
Sbjct: 184 LEHKNITTTQIYSKMAAQQ 202


>gi|269216376|ref|ZP_06160230.1| prophage LambdaCh01, site-specific recombinase, phage integrase
           family [Slackia exigua ATCC 700122]
 gi|269130635|gb|EEZ61713.1| prophage LambdaCh01, site-specific recombinase, phage integrase
           family [Slackia exigua ATCC 700122]
          Length = 452

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 44/311 (14%), Positives = 94/311 (30%), Gaps = 59/311 (18%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES----RKHTPSSAIQFLTSM 140
           G  +  +    +    +I    G      +T K I +  +     R+ + ++  +   ++
Sbjct: 86  GGYSPLTLKDDDLQVRKIEALWGGTLLENLTAKKISAAYDRLLANREASRNAIHKINGTL 145

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM--QQFKSFWSEGSQPRLAFEF 198
            ++   AV  E V  NPC  V+ P+ K +  +  + E            + +   +A   
Sbjct: 146 SLVMDHAVANELVEANPCNLVKAPRPKPKERKALSDEQALELAMALRTEKQTGNTVAVWI 205

Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFS------------IKTQKT-GTIITVELPDG----F 241
            L +G+R  +      +++  +               I+  K+  +   + + +G     
Sbjct: 206 ALATGMRRGEIIGLVWRNVDFDRRRVYVGQQYAADHTIRDPKSEKSHRWLGIDNGTVTFL 265

Query: 242 MKLLAMTPI----------GKETFFINNDKQKMNATQFSIWFK----------------- 274
            +  A              G+     N+  Q M+   F+ W +                 
Sbjct: 266 AEWKARQARDMEVQGLDQSGETPVCTNSVFQFMDPNTFNRWRRQYFAEHGLGEFGPSVQY 325

Query: 275 -------AKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTK-G 325
                       A V  + H +R   AT+   +GA         G  +     + Y    
Sbjct: 326 TDSQGRKRWRKGAYVGYNLHELRHTQATLLIGSGADIKTAQQRLGHSSASLTMDIYAHFI 385

Query: 326 ADRIRLGIKNS 336
           A   R+     
Sbjct: 386 AQNDRIAANTI 396


>gi|253570202|ref|ZP_04847611.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251840583|gb|EES68665.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 409

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 47/318 (14%), Positives = 109/318 (34%), Gaps = 33/318 (10%)

Query: 54  STPKREYINSPRKKPTTLKWLISEYR---KSAHWGSLAVNSRISFESYFDQIIRKSG--- 107
           +   ++      K   TL  ++   R   KS      A  +  +++     +        
Sbjct: 93  AASVKDAFQGSMKTQMTLMKMLDALRDEVKSRIGIDRAKGTYPAYDFTCRTMREFIETKF 152

Query: 108 ---DFDYRKITTKHIRSG----VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
              D  + ++T + I       ++ + +   +   +L  ++   K A ++ +        
Sbjct: 153 KTKDLAFGQLTEQFIHDYENFILDEKGYAVDTVRHYLAILKKTCKRAYQEGHSERFMFQH 212

Query: 161 VERPKRKTEGIRPWTKEDMQQFK--SFWSEGSQPRLAFEFLL---YSGLRCSDSCRAGVQ 215
              PK+  +  +   +E  ++ +        +  RLA +  L   Y+G+  SD+     +
Sbjct: 213 YVLPKQTVKTPKALCRESFEKIRDVEIAPHRTTHRLARDLFLFACYTGVAYSDAVTVTRE 272

Query: 216 HLQNN-----IFSIKTQKTGTIITVELPDGFMKLLAMTPIG-KETFFINNDKQKMNATQF 269
           +L            + +K     +V+L    + L+       ++T F       ++    
Sbjct: 273 NLYTGEDGKLWLKYRRKKNELRASVKLLPEAVALIEKYHDDSRDTLF-----PMIHYPSM 327

Query: 270 SIWFKAKATKAGVNKSA--HGVRKFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGA 326
               KA A  AG+ ++   H  R   A++   +AG     + +  G   +   + Y +  
Sbjct: 328 RNHMKALAVLAGIKENLCYHVGRHSFASLVTLEAGVPIETISSMLGHSNIQTTQVYAR-V 386

Query: 327 DRIRLGIKNSRRISSVVD 344
              +L     R I +  D
Sbjct: 387 TPKKLFEDMDRLIEATGD 404


>gi|229162582|ref|ZP_04290542.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus cereus R309803]
 gi|228620845|gb|EEK77711.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus cereus R309803]
          Length = 322

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 44/290 (15%), Positives = 94/290 (32%), Gaps = 28/290 (9%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISF----ESYFDQIIRKSGDFDYRKITTKHIRSG---VE 124
           K L+ ++         A ++   +          I +   + +  ++T K IR+     +
Sbjct: 22  KNLVKDFLTEKKAQGKAASTLKQYHWDLRIILFLIHQHFNNKNLIELTRKDIRNLSIIFQ 81

Query: 125 SRKHTPSSAIQFLTSMRVLFKW-AVRQEYV-AINPCLSVE-RPKRKTEGIRPWTKEDMQQ 181
               + +     ++++R   ++ A   +Y    N    V   PK     I   T+E ++ 
Sbjct: 82  ELGMSNARVNGLMSALRSALEFCADDDDYAYEFNVGSRVRGLPKNPVREITFITEEQIEW 141

Query: 182 FKSFWSEGSQPRLA--FEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELP 238
                    +  LA       YS  R ++  +   + L    F+ +   K G    +   
Sbjct: 142 LIDQLIAQERYMLATYLALSYYSAARKNEVYQVQKEELTERYFTNVVRGKRGKKFRLYYN 201

Query: 239 DGFMKLLA--MTPIGKETF-------FINNDKQKMNATQFSIWFKAKAT----KAGVNKS 285
               + +   +   GK+T        + N +++ +N + F+ W K  A     K G    
Sbjct: 202 PRVQECIRLYINQRGKDTIPDLFVRVYKNGERRTLNKSVFNYWCKILAKMLYEKEGKEYK 261

Query: 286 --AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
              H  R          G    +L +      +   ++Y K      +  
Sbjct: 262 INPHCFRHSRLDNLKVQGVPLEKLKSLANHSDISTTQSYLKDRSEEDIAD 311


>gi|10956075|ref|NP_052162.1| DNA invertase-like protein [Chlorobium limicola]
 gi|1688244|gb|AAB36935.1| DNA invertase homolog [Chlorobium limicola]
          Length = 182

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 49/147 (33%), Gaps = 11/147 (7%)

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN--IFSIKTQKTGTIITVEL-PDGFMKLLA 246
           ++ R     +   GLR S++C   +  +     +  +   K G   T  L  D    + A
Sbjct: 26  ARDRCLLLLMFRHGLRVSEACGLQLSQVDAESRVLHVSRLKKGLSTTHPLRTDELKAIRA 85

Query: 247 ------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISA 298
                       + FF++N +  ++     +  +     AG+      H +R       A
Sbjct: 86  WLAIRAKMKPDTDDFFLSNRRGPLSRKTAWLAIRKYGELAGLPLPAHPHMLRHACGFALA 145

Query: 299 DAGATAHELMATYGWKTVDQAETYTKG 325
           D GA    +    G + +     YT  
Sbjct: 146 DQGADTRLIQDYLGHRNIQHTVIYTAA 172


>gi|288801868|ref|ZP_06407310.1| integrase [Prevotella melaninogenica D18]
 gi|288335910|gb|EFC74343.1| integrase [Prevotella melaninogenica D18]
          Length = 431

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 45/292 (15%), Positives = 100/292 (34%), Gaps = 29/292 (9%)

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLT 138
           R    + +L  + +   +   ++ ++        +   +  R  ++ R    S+    L 
Sbjct: 123 RAEGTYLNLYYSDKNLRDFIENKGVQDISIVTITESLFEEYRFFLKKRGLKASTVNTNLC 182

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLA 195
            +  L   AV    +  N   + +  K + + IR   K D+ +  +      E    RL 
Sbjct: 183 WLSRLMFRAVSSRIIRCNSFENAKYEKEEKK-IRFLQKGDVMKLMAMTMNDRESELARLM 241

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQ---NNIFSIK--TQKTGTIITVELPDGFMKLLAMTPI 250
           F F  ++G+  +D      +H+Q   +    I+   QKT     V L      ++     
Sbjct: 242 FVFSCFTGMAIADMENLEYRHIQTAADGRKYIRKERQKTKVEFVVPLHPIAEAIIRHCLE 301

Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---------------SAHGVRKFSAT 295
            ++    N ++Q +        F  + +++ ++                S H  R    T
Sbjct: 302 EQKG---NEEQQTVKEKGKKHIFPRECSRSVIDGRLSIVGKACGIRQRLSYHVARHTFGT 358

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
           +S  AG     +    G  ++   + Y +  D      ++  R+ +   + D
Sbjct: 359 MSLSAGIPIESIAKMMGHASISSTQIYAQVTDNK--ISEDMDRLIAKQSAKD 408


>gi|226355503|ref|YP_002785243.1| phage integrase [Deinococcus deserti VCD115]
 gi|226317493|gb|ACO45489.1| putative phage integrase [Deinococcus deserti VCD115]
          Length = 395

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 50/363 (13%), Positives = 99/363 (27%), Gaps = 44/363 (12%)

Query: 17  RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76
           R+G   +  R+    ++ +              AL  +   RE       +  T+   + 
Sbjct: 27  RNG-YRWQLREKFQGKMVVVTSGSEATKLDAKRALARAITDRERGLLVASEKVTVGEWLD 85

Query: 77  EYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH--TPSSA 133
            +        +   +   +E      +  +       K+   HI             S+ 
Sbjct: 86  RWL-HLRKPHVRETTFEQYELRLRLYVPEELKRLTLNKVKRAHILELEAQLSEHLRASTR 144

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVE-----RPKRKTEGIRPWTKEDMQQFKSFWSE 188
            + +  +   FK A+ Q+ +  NP  S++       KR+ +  +  T  ++  F      
Sbjct: 145 KKVMEHLSAAFKEAMHQDLLVKNPADSIKVSASLAEKRQPKRRKALTDAELVTFLQEAQS 204

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN--IFSIKTQKT--------------GTI 232
                  F  L   GLRCS++       +        I                    + 
Sbjct: 205 -DPLFPLFYLLFSLGLRCSEALGLRWGDVDFEYREIHIVQANKLVKNKPRLGELKTENSR 263

Query: 233 ITVELPDGFMKLLAM--------------TPIGKETFFINNDKQKMNATQFSIWFKAKAT 278
            T+      + +L                T    +  F       ++             
Sbjct: 264 RTLPASPDLLAVLRAHQQNQNVLKAQLGGTWPPHDLIFTTGLGTLLDRHNVQRNIHRICE 323

Query: 279 KAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA--DRIRLGIKN 335
           +AG+ K   H  R  + T    AG     +    G      A  + +    D IR    +
Sbjct: 324 RAGIEKFGTHSGRHTNITNLLRAGHLPEVVAKIAGHSRPSTAMLHYRTVMRDEIRNAEFS 383

Query: 336 SRR 338
            +R
Sbjct: 384 LQR 386


>gi|218282008|ref|ZP_03488320.1| hypothetical protein EUBIFOR_00889 [Eubacterium biforme DSM 3989]
 gi|218216995|gb|EEC90533.1| hypothetical protein EUBIFOR_00889 [Eubacterium biforme DSM 3989]
          Length = 453

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 55/399 (13%), Positives = 104/399 (26%), Gaps = 91/399 (22%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR------KK 67
           +R     ++YY+   +G++             ++ +       K E              
Sbjct: 9   KRKDKYNVVYYYADKYGKQ--------KQKWESFRTLREAKKRKAEVELQQANRTFIAPS 60

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR 126
            TTL      Y         ++++     + F   I    G +   +I    I     + 
Sbjct: 61  TTTLNEFWPRYVDLYGCNKWSISTMEKNTALFTTYISPYLGHYKLDEIRPITIEQYYANL 120

Query: 127 KHTPSSAIQFLTSMRVL----------FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
           K + ++      S RV+          F  AV+ EY++ NP L V+ PK   E    WT 
Sbjct: 121 KESENTKKTGKVSTRVVAEVHRILRCTFNVAVKWEYISNNPFLKVDTPKHDYEKREIWTA 180

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---------NNIFSIKTQ 227
             + +      +  +  +A +      LR  +       ++          +    IK Q
Sbjct: 181 NQIAKALEVCEDP-KLSIAIQLAFACSLRMGEVLGLTWDNVHISEDDFACGDTHIYIKQQ 239

Query: 228 --------------------------------------KTGTIIT-VELPDGFMKLLAMT 248
                                                 KT + +  + LP+     L   
Sbjct: 240 LERARTDAIEKLNNKDVLFIFPQFEKKKNATRLILKTPKTDSSVRKIWLPNTLACFLKQW 299

Query: 249 PIGKE--------------TFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFS 293
              +                     +    + +           +AG+     H +R  S
Sbjct: 300 KEDQSKYKEAYGDAYHDYNLVICQPNGIPCDGSIIRKGLSKLEKEAGLPHVVFHSLRHTS 359

Query: 294 ATI-SADAGATAHELMATYGWKTVDQA-ETYTKGADRIR 330
            T                 G    D   + Y+   D  R
Sbjct: 360 TTYKLKLNNGDIKATQGDTGHSQADMVMDLYSHILDEDR 398


>gi|213022359|ref|ZP_03336806.1| integrase [Salmonella enterica subsp. enterica serovar Typhi str.
           404ty]
          Length = 480

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 49/348 (14%), Positives = 92/348 (26%), Gaps = 80/348 (22%)

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFES-------YFDQI-IRKSGDFDY 111
               P  K  TL  LI +Y +     +    +     +        FD + I+  G    
Sbjct: 125 EPEVPEPKALTLASLIEQYEQENA-QNWKPATLSENRASHSTLIEIFDYLDIQDVGKATR 183

Query: 112 RKITTKHIRSGVESRKHTPSS-----------------------AIQFLTSMRVLFKWAV 148
             +        +  +                               ++L  M  +FKWAV
Sbjct: 184 SDMLRVREVLQLLPKNRKQRFKSMPLSDLLNRESKTDCLDVVTINNKYLIKMAAVFKWAV 243

Query: 149 RQEYVAINPCLSVERP---KRKTEGIRPWTKEDMQQFKSFWSEGSQ-------PRLAFEF 198
           R + +A N    +E     ++ ++    ++ E + Q        SQ              
Sbjct: 244 RNDLIAKNLTEGLELKVPQRKASDARDAFSPEQVGQLLVAAKAYSQKTAGKPYHYYVTAL 303

Query: 199 LLYSGLRCSDSCRAGVQHLQ---NNIFSIKTQKTGTIIT------------VELPDG--- 240
              +G R ++  +  V+ ++        I   +  + +             V L DG   
Sbjct: 304 AAITGARLNEVAQLQVKDIRTTEAGTVYIHINEDDSSLPGKSIKNAHSDRCVPLVDGAYG 363

Query: 241 --------FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-------- 284
                    ++            F   D  K+    +         +  + K        
Sbjct: 364 FVLSDFMSLVEDRRKAKGDNAMVF---DGLKLMKNGYGEQVSKWFNRTLLPKVLADRSGL 420

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRL 331
           + H  R   AT     G       A  G  +     + Y K  +  RL
Sbjct: 421 AFHSFRHTVATQLKQHGVELAYAQAIMGHSSGSITYDRYAKEVEVDRL 468


>gi|323485587|ref|ZP_08090931.1| phage integrase family Site-specific recombinase [Clostridium
           symbiosum WAL-14163]
 gi|323401105|gb|EGA93459.1| phage integrase family Site-specific recombinase [Clostridium
           symbiosum WAL-14163]
          Length = 320

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/304 (13%), Positives = 84/304 (27%), Gaps = 40/304 (13%)

Query: 36  PYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISF 95
           P P        Y       T  R  ++            I +YR      +++ N+   +
Sbjct: 32  PEPSSDEEKREY----AKQTAIRHAMS------------IEDYRLYLSAQNMSENTIHVY 75

Query: 96  ESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI 155
                Q      +  Y  +    +        + P +    + ++    ++        +
Sbjct: 76  AYAIRQFFALYHEITYSNLK---LYKVFLLEHYKPQTVNLRIRALNSYIEF------KKL 126

Query: 156 NPCLSVE--RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL---AFEFLLYSGLRCSDSC 210
           NP   +   R + K       ++ D + +        +  L      F+  +G R S+  
Sbjct: 127 NPGK-IPMVRIQHKNYLDNVISEADYE-YLKNCLLRDEKYLYYFIIRFMAATGARVSEVI 184

Query: 211 RAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK----LLAMTPIGKETFFINNDKQKMNA 266
           +   + +      I   K   +  + +P    K     L      +   F+N     +  
Sbjct: 185 QFEAEDIFTGYKDI-YSKGNKLRRIYVPKALQKDAIAWLKAIRQERGFVFLNRYGNPITP 243

Query: 267 TQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
                  K  A   G+N      H  R   A    +       L    G K ++    Y 
Sbjct: 244 GGIRGQLKNMALAYGMNPEVVHPHSFRHRFAKSFIEKCGDISLLSDLLGHKNLETTRIYL 303

Query: 324 KGAD 327
           + + 
Sbjct: 304 RRSS 307


>gi|312904161|ref|ZP_07763329.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0635]
 gi|310632637|gb|EFQ15920.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0635]
          Length = 408

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 62/398 (15%), Positives = 123/398 (30%), Gaps = 79/398 (19%)

Query: 13  KERTRHGKIIY-YF----R-KGHGRRIRLPYPHESTFIPAYMSA--LTGSTPKREYINSP 64
             + ++G+  + YF    R  G GR+ ++      +   A  +A  + G     E++   
Sbjct: 6   SYKLKNGQERWEYFVSNGRSNGTGRQQKIHKRGFRSHKEALKAAKIIEGQIASEEFVK-E 64

Query: 65  RKKPTTLKW----LISEYRKSAHWGSLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHI 119
             +  T+       I+EY+      ++   SRI +       I    G++   K      
Sbjct: 65  NPQKMTISKFMNIWINEYKN-----NVKEGSRIVYRDAIRMYIDPYIGNYQLNKYKPADH 119

Query: 120 RSGVESR-------KHTPSSAIQFLT----SMRVLFKWAVRQEYVAINPCLSVERP---- 164
           +  + S        K+    +   +     ++   FK A +  +V  NP   VE P    
Sbjct: 120 QKFINSLFTNKELGKNKNGLSYNTVKIVNAALSNAFKKAQKLGFVKSNPTYLVEFPLDKV 179

Query: 165 -----KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HL 217
                K K        +E++    +   +     + F  +   GLR  +           
Sbjct: 180 KEKTNKEKKLEFYTLEQENLFLDTARNFDEYMWYVFFLIIFDLGLRKGEVMALRWFNFDF 239

Query: 218 QNNIFSI-------------------------KTQKTGTIITVELPDGF-------MKLL 245
           ++NI +                          ++ K    +   + + +         +L
Sbjct: 240 RDNILTFDKQRLYRKERPGQVILDDVKTDAGKRSLKMTNRVRNSVLELYGINYDLTSNVL 299

Query: 246 AMTPIGKETFFINNDKQ----KMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADA 300
            MT   ++  FIN+  +     +        +     KA + K   H  R  +A     A
Sbjct: 300 PMTNSNQDFLFINHRGKNVGLPIRQRSVDTAWHRIIQKANLPKIRIHDGRHTNAARLRQA 359

Query: 301 GATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSR 337
           G    ++    G K V   E Y    A+     +    
Sbjct: 360 GVPLEDIKDMLGHKNVKTTEIYAHVSAEVKERAVNKLE 397


>gi|229099925|ref|ZP_04230847.1| Integrase-recombinase [Bacillus cereus Rock3-29]
 gi|228683470|gb|EEL37426.1| Integrase-recombinase [Bacillus cereus Rock3-29]
          Length = 390

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/180 (17%), Positives = 63/180 (35%), Gaps = 24/180 (13%)

Query: 167 KTEGIRPWTKEDMQQFKSFWSE--GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFS 223
           +    R  + +++ +   F+ E            L  +G R  + C A V+ L  +  + 
Sbjct: 191 QDRPNRDLSYDEVMKILGFYKEQRHLVNYTILLALASTGARIQELCTARVKDLHYDGKYW 250

Query: 224 IKTQKTGTIIT-VELPDGFMKLLA----------MTPIGKE-TFFINNDKQKMNATQFSI 271
           +K    G  +  + +P+   + ++          +   G E   F+N      N    S 
Sbjct: 251 LKVTGKGDKVRELFIPEHLFQCISEMRRRRGFQTILDRGDECPLFVNQRGNFYNPKTLSN 310

Query: 272 WFKAKATKAGVN--------KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETY 322
                  K  ++         +AH  R   A ++ + G A  + LM T G + +   + Y
Sbjct: 311 QVTDMIKKTNLDFLKYRENPVTAHTFRHAFAIMAVEQGNADLYHLMQTLGHENIQTTKIY 370


>gi|149003143|ref|ZP_01828052.1| DNA-damage-inducible protein D [Streptococcus pneumoniae SP14-BS69]
 gi|237651082|ref|ZP_04525334.1| integrase [Streptococcus pneumoniae CCRI 1974]
 gi|237821195|ref|ZP_04597040.1| integrase [Streptococcus pneumoniae CCRI 1974M2]
 gi|147758884|gb|EDK65880.1| DNA-damage-inducible protein D [Streptococcus pneumoniae SP14-BS69]
          Length = 388

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 51/298 (17%), Positives = 110/298 (36%), Gaps = 44/298 (14%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH 128
           T   L+  + ++    ++  ++ +  +   D  ++   G++   K+T   I+  V     
Sbjct: 69  TYAELVENWLETYC-HTVKKSTLMGTKFKIDKYLLPAFGNYRLDKLTPPIIQKQVNQWAK 127

Query: 129 TPSSAIQ------FLTSM-RVLFKWAVRQEYVAINPCLSVERPKRKTEG---IRPWTKED 178
             +   +       L S+ + + K+AV  + +  NP   V  P+RK +    ++    ++
Sbjct: 128 DYNQLGKGFQEYPLLHSLNKRILKYAVSLQAIPFNPARDVIVPRRKEKEGQKLKYLDDDN 187

Query: 179 MQQFKSFWS------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS--------- 223
           +++F ++        +     + ++ LL +GLR  +        +     +         
Sbjct: 188 LKKFLTYLEQLPNTYKNFYDTVLYKTLLATGLRIRECLALKWSDIDLKNGTLDVNKTLNI 247

Query: 224 ---IKTQKTGTIITVELPDGFMKLL------AMTPIGKET------FFINNDKQKMNATQ 268
              I   KT + I V   D    L+        + IGKE        F N+  + ++A  
Sbjct: 248 IKEITGPKTKSSIRVIDLDNKTVLMLRLYKARQSQIGKEMGLTYEKVFSNSFDKHIDARM 307

Query: 269 FSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
            S        +AG  + + H  R   A+I  +AG    E+    G   +    + Y+ 
Sbjct: 308 LSFRLVKHLERAGCPRFTFHAFRHTHASILLNAGLPYKEIQTRLGHAKLSMTMDIYSH 365


>gi|330962790|gb|EGH63050.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. maculicola str. ES4326]
          Length = 404

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 46/326 (14%), Positives = 96/326 (29%), Gaps = 47/326 (14%)

Query: 45  PAYMS-ALTGSTPKREYINSPRKKPTTLKWLISE-YRKSAHWGSL-AVNSRISFESYFDQ 101
             Y++ A     P             +L+  I + Y       +     +  +  + F+ 
Sbjct: 70  ARYLADAHEHGEPLAVTRGRRGTATPSLREFIDDTYLAWFKAHNKGYAKTLHTLNNNFES 129

Query: 102 IIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV 161
           I+ +  D        + +R+   +  + PS+  + + ++  +   AV  EY+  +P   +
Sbjct: 130 IMSQRLDT-ITGRDLESLRTTWLTAGNKPSTVNRKMGTISGVLSRAVDWEYLPSSPLDKI 188

Query: 162 ERPKRKTEG-IRPWTKEDMQQFKSFWSEGSQPRLAFE----------------------- 197
           +  K  T+G +R  +KE+ +  ++        R   E                       
Sbjct: 189 KPLKVDTKGQVRYLSKEEKKNLRNALEVREH-RACLERDSANQWRKDRGKVPLPDLKELA 247

Query: 198 ----------FLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIITVELPDGFMK 243
                       L +G+R  +        +     +I     T KT     + +     +
Sbjct: 248 FTDHLKPMVLVSLNTGMRRGELFSLTWPMVNFQSKTITVCGDTAKTSETRHIPMNAEAFQ 307

Query: 244 LLAMTP---IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADA 300
            L             F   +  +M     S W +       V    H +R   A+    A
Sbjct: 308 TLKSWKEQSADSVFVFPGLEGGRMG-DVKSAWLRLLKDAHIVGFRWHDMRHDFASRLVMA 366

Query: 301 GATAHELMATYGWKTVDQAETYTKGA 326
           G   + +    G   +     Y   A
Sbjct: 367 GVPLNTVRDLLGHTDIKMTLRYAHLA 392


>gi|186474625|ref|YP_001863596.1| integrase family protein [Burkholderia phymatum STM815]
 gi|184198584|gb|ACC76546.1| integrase family protein [Burkholderia phymatum STM815]
          Length = 405

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 46/298 (15%), Positives = 105/298 (35%), Gaps = 29/298 (9%)

Query: 71  LKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRK--SGDFDYRKITTKHIRSGVE--S 125
              L S+Y +  H     AV++    +S     +R+    D   + +    + + +   S
Sbjct: 106 FGALRSQYLQHLHELRGFAVSTAAQHDSTLKDFLRRAVLPDRTLQTLGATDVENYIRLKS 165

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAIN-PCLSVERPKRKTEGIRPWTKEDMQQFKS 184
           R+ T  +    +  +R   ++   +  + +   C+   R  R     R    + + +  +
Sbjct: 166 REVTRQTLQHVIAHLRAFLRYCEDRGDITLGLHCIDTPRTYRAELPPRALDWKLVPKLVN 225

Query: 185 FWSEGSQ----PRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELP 238
                S+           + Y GLR S+     +   + ++    ++ +KT +++ + L 
Sbjct: 226 SVDRHSRTGWRDHAVLHLMAYYGLRASEVAALTLSSINWESRTLHVQQRKTRSVLVLPLA 285

Query: 239 DG----FMKLLAMTPIGKE--TFFINNDK--QKMNATQFSIWFKAKATKAGV---NKSAH 287
           D       + L     G +    F+        +        F  +A  +G+   N S++
Sbjct: 286 DRTINLLRRYLRCGRSGSDCPALFLRARSPVGPLTHYGVVDIFCTRARLSGLPITNSSSY 345

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345
            +R   A    D G     +    G ++++    Y      +RL I   R ++  V +
Sbjct: 346 ALRHAFAMRLLDRGVGTKAIGDILGHRSLESTCVY------LRLDIAMLRSVALQVPT 397


>gi|187731694|ref|YP_001879477.1| prophage integrase [Shigella boydii CDC 3083-94]
 gi|187428686|gb|ACD07960.1| prophage integrase [Shigella boydii CDC 3083-94]
          Length = 413

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 50/333 (15%), Positives = 111/333 (33%), Gaps = 33/333 (9%)

Query: 24  YFRKGHGRR--IRLPYPHESTFIPA------YMSALTGSTPKREYINSPRKKPT-----T 70
           Y+R  + +R  I L    E +   A      Y + +   T  +EY    R+        T
Sbjct: 47  YYRPSNKKRTLISLGSLDEVSLADARKRRSEYRTLIAAGTDPQEYERQKREAEARRQGNT 106

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHT 129
            + + + + +     +LA N+        +  +    G+     +T +     +   K  
Sbjct: 107 FENVAALWYEMKKNQNLAHNTIKDIWRSLEKYVFPYIGNTPIDTLTARRFVEILTPIKAR 166

Query: 130 PS--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVER--PKRKTEGIRPWTKEDMQQFKSF 185
            +  +  + L  +  +  +A     + IN   +V +  P    + +     E + Q    
Sbjct: 167 GNLETLKRVLQRINEVMDFAANSGMIDINTAANVRKTFPSPTKKHMPTIRPEQLPQLMHD 226

Query: 186 WSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIITVEL- 237
            S  S   Q RL  E+ L +  R +++  A  + +     +        K      + L 
Sbjct: 227 LSIASIERQTRLLIEWQLLTATRPAEASAARWEEINLEAATWTIPAGRMKMRRDHVIPLC 286

Query: 238 --PDGFMKLLAMTPIGKETFF--INNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFS 293
                 ++ +      +E  F  + N  Q M++   +   +       +   +HG+R   
Sbjct: 287 AQAMAVLEAMKPISARREHVFPSLKNPVQPMSSQTANAALRRMGYTGVL--VSHGLRAIF 344

Query: 294 ATISADAGATAHELMATYGWKTVDQAET-YTKG 325
           +T + + G     + A       ++    Y + 
Sbjct: 345 STAANEEGFEPDVIEAALAHVDTNEVRRAYNRS 377


>gi|37955774|gb|AAP22612.1| IntI1 [Pseudomonas aeruginosa]
          Length = 319

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/293 (12%), Positives = 89/293 (30%), Gaps = 62/293 (21%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129
           ++ + R+   +   ++ +  ++  +    IR  G      + +  + + +      RK +
Sbjct: 16  VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75

Query: 130 PSSAIQFLTSMRVLFK--WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            S+  Q L ++   +         ++       + RP+         T +++ +   F  
Sbjct: 76  VSTHRQALAALLFFYGKVLCTDLPWLQ-----EIGRPRPSRRLPVVLTPDEVVRILGFL- 129

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
           EG   RL  + L  +G+R S+  +  V+     +    ++  K      + LP+     L
Sbjct: 130 EGEH-RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSL 188

Query: 246 AMTPIGKETFFINN---------------------------------------------D 260
                    +++ +                                              
Sbjct: 189 REQLSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVR 248

Query: 261 KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATY 311
           +  M    F   FK    +AG+ K  + H +R   AT    +G     +    
Sbjct: 249 RHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLL 301


>gi|159184660|ref|NP_526319.1| phage-related integrase [Agrobacterium tumefaciens str. C58]
 gi|17739597|gb|AAL42205.1| phage-related integrase [Agrobacterium tumefaciens str. C58]
          Length = 388

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 41/286 (14%), Positives = 92/286 (32%), Gaps = 29/286 (10%)

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG-DFDYRKI-- 114
            +        P TL  L+    ++ HW  +   ++    +    I+ + G +    K+  
Sbjct: 51  EKAAKRRGDLPYTLGELVQHVYET-HWAPMPSGAKQLINANL--IVAEIGANLPVAKLGK 107

Query: 115 -TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINP-CLSVERPKRKTEGIR 172
                 RS + +  + P +  + + ++      A     +   P C   +  + +     
Sbjct: 108 ADVDRARSKLLAAGNAPGTVNRKVAALSKCLSEAEDLGIIERKPKCNKYKESEHRVRRFT 167

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFL-LYSGLRCSDSCRAGVQHLQNNIFSI------- 224
           P   E+ +    F   G Q    +  L L +G+R S+      + +QN   ++       
Sbjct: 168 P--DEEKKTLAFFDRIGHQDMADYTVLSLDTGMRQSEVLSLHFEDIQNGRVTVWGVGATG 225

Query: 225 KTQKTGTIITVELPDGFMKL--LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
           +  K+G   TV L      +          +  F +     ++    + ++   +    +
Sbjct: 226 QRTKSGKSRTVPLTARAQAVFDRRREYTEGKAVFPS-----LSKNSVAHYWGRLSEALNL 280

Query: 283 NKS----AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
                   H +R    +  A  G  A  +    G  T+   + Y  
Sbjct: 281 ESDKQFVPHILRHEFCSRLASNGENAAAIQKLAGHATLLVTQRYVH 326


>gi|291514242|emb|CBK63452.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
          Length = 400

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 48/280 (17%), Positives = 92/280 (32%), Gaps = 31/280 (11%)

Query: 90  NSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKH----TPSSAIQFLTSMRVL 143
            S   ++SY  + +   G  D  +  IT +  R      K       S     L  +  L
Sbjct: 129 RSSRYYQSYIREFLDSKGKADIAFSDITEEFGREYKVYLKRYKNFGASQTNHCLCWLNRL 188

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK-----SFWSEGSQPRLAFEF 198
              AV  E +  NP   +E  K+ +      +K +++Q       +        R AF F
Sbjct: 189 IYLAVDHEIIRANPLEELEYEKKPSSKRMHISKAELKQLLELKLPANDPLKELARRAFIF 248

Query: 199 LLYSGLRCSDSCRAGVQHL-----QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE 253
             ++GL   D+      H+           I  +KT     + L     ++L       +
Sbjct: 249 SCFTGLAYVDTQLLYPHHIGRTADDRRYIRINRKKTKVESFIPLHPIAEQIL-------D 301

Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGV------NKSAHGVRKFSATISADAGATAHEL 307
            +   +D Q +           +  + GV      N S H  R    +     G     +
Sbjct: 302 LYNTTDDTQPVFPLPSRDMMWFEIHELGVIIGRKENLSYHQARHSFGSFLISEGICTESI 361

Query: 308 MATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
               G  ++   +TY K A++     ++  ++     +++
Sbjct: 362 AKMMGHASITSTQTYAKIAEKK--IAEDMDKLIERRKNNE 399


>gi|227461203|gb|ACP39546.1| putative integron integrase [uncultured microorganism]
          Length = 310

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 39/283 (13%), Positives = 78/283 (27%), Gaps = 50/283 (17%)

Query: 92  RISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQE 151
           + ++  +  + I   G      +      + + S     + A            +  ++ 
Sbjct: 27  KETYWHWIKRFIVFHGKRHPSLLGRAEAEAFLSSLATDRNVAANAQNLALASILFLYKEV 86

Query: 152 YVAINP-CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210
                P    V R K+        ++++ +   +         LA   L  +G+R  ++ 
Sbjct: 87  LAEDLPWLSDVTRAKKPKRIPTVLSRQETEALLAAAGPQGGAALAVHLLYGTGMRLLEAL 146

Query: 211 RAGVQHLQ--NNIFSIKTQKTGT--------------------------------IITVE 236
           R  V+ +        ++  K G                                 +  V 
Sbjct: 147 RLRVKDVDFDRRELCVRDGKGGKDRMTVFPQVLLAPMRAHLAWRRTVFDEDSRRDMADVW 206

Query: 237 LPDGFMKLLAMTPI--GKETFFINND-----------KQKMNATQFSIWFKAKATKAGVN 283
           LPD             G +  F+ N            +  +  +Q     +    +AGV 
Sbjct: 207 LPDALAVKYPNAAREWGWQYVFVANRFSTDPVSGVARRHHLGESQIQKLVRGAGIQAGVA 266

Query: 284 K--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           K  S H +    AT   ++GA    +    G   V     YT 
Sbjct: 267 KPVSPHTLHHSFATHLLESGADIRTVQELLGHANVSTTMIYTH 309


>gi|190572359|ref|YP_001970204.1| putative phage integrase [Stenotrophomonas maltophilia K279a]
 gi|190010281|emb|CAQ43889.1| putative phage integrase [Stenotrophomonas maltophilia K279a]
          Length = 392

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 50/373 (13%), Positives = 106/373 (28%), Gaps = 77/373 (20%)

Query: 22  IYYFRKGHGR---RIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEY 78
            +Y    H     RI++   + +  +    + +                  +L  L   +
Sbjct: 32  RWYVLSPHPEGVGRIKMTVANGNARLSDLHAIMEARG--------GGSLRGSLDHLTEIF 83

Query: 79  RKSAHWGSLAVNSRISFES-------YFDQIIRKSGDFDYRKITTKHIRSGVESRK---- 127
           +KS+ +  L+  SR  ++        Y  +  R  G      ++   ++  VE+      
Sbjct: 84  KKSSEYLDLSAKSREGYDYCAAKACGYLLRDGRLLGQQRVEYLSVPVLQRVVETLATGRP 143

Query: 128 ---------HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP--WTK 176
                     TP++A +  + +R LF W +R  +   NP   + + + K +   P   + 
Sbjct: 144 AIGKLPGIPATPAAANRVASYLRRLFAWGIRHGHCTTNPADGIRKVREKRDARMPDHDSF 203

Query: 177 EDMQQFKSFWSEGSQPRLA----------FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226
           + + +F +    G Q   A                  LR  +       HLQ+       
Sbjct: 204 DAVLRF-ARTCAGRQAHTAGSCPPYLPAVMVLAYAVRLRGIEVDTLTDAHLQHEGIRSNR 262

Query: 227 QKTGTIITVELPDGFMKLLA-----------------MTPIGKETFFINNDKQKMNATQF 269
           +K                +                       +    ++     +  +  
Sbjct: 263 RKGSRDNVTLWTKELRAAVKWLQGYRDERMQAHGRPIPIKPEQRRLLVSESGTPLTKSAL 322

Query: 270 ----SIWFKAKATKAGVNKS----AHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
                   +    +  + K      HG++    T S D GA         G  T    + 
Sbjct: 323 DSAWQRMVRRAIAEGVIEKDQRFALHGLKHRGITDSEDKGA--------GGHVTEAMRQL 374

Query: 322 YTKGADRIRLGIK 334
           Y      ++  +K
Sbjct: 375 YDHSVPVVKAAVK 387


>gi|153819719|ref|ZP_01972386.1| phage integrase [Vibrio cholerae NCTC 8457]
 gi|126509737|gb|EAZ72331.1| phage integrase [Vibrio cholerae NCTC 8457]
          Length = 407

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 43/318 (13%), Positives = 88/318 (27%), Gaps = 50/318 (15%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD 110
                P+ ++ +   +    L+ L  ++  S     +  ++   ++      I   G   
Sbjct: 66  YAAHFPESKHASGVPQAKNLLQ-LTKQFLASKD-HDIRRSTLQRYDWVLRDFIEIYGKTR 123

Query: 111 YRKITTKHIRSGVES---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167
                +    +       +  T  +  + L ++     W  + EYV+ +    ++R K  
Sbjct: 124 SSDTLSPRTLTEFRQELVKGKTGRTINRNLVTINAFLAWLYKMEYVSRDLSKVLQRVKES 183

Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK 225
              I+P++  ++           Q R     L+YSG+R  + C    + +   N    I+
Sbjct: 184 EVDIQPFSMGEIDSILKHC-HQLQHRNIVTLLVYSGIRSGELCALAWEDVDFENKTIHIR 242

Query: 226 TQ----------KTGTIITVELPDGFMKLLAMTP--------------------IGKETF 255
                       KT     V+L    +  L                          +   
Sbjct: 243 RSTYDMRGLKTTKTDKERFVDLLPPALDALKAQQYLTYSFEPKEYDIELPGQAYRKESLR 302

Query: 256 FINNDK----------QKMNATQFSIWFKAKATKAGVNKS-AHGVRKFSATISAD-AGAT 303
           F+ N K                     + A   K GV     + +R   A+     A   
Sbjct: 303 FVFNPKVVREQKVSGYDYYGKRALGRMWTALCKKGGVRYRNQYQLRHTYASWMITHANVN 362

Query: 304 AHELMATYGWKTVDQAET 321
              L    G   +     
Sbjct: 363 VSYLAQQMGHADITMVAR 380


>gi|315223979|ref|ZP_07865823.1| integrase [Capnocytophaga ochracea F0287]
 gi|314946083|gb|EFS98088.1| integrase [Capnocytophaga ochracea F0287]
          Length = 411

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/281 (12%), Positives = 91/281 (32%), Gaps = 34/281 (12%)

Query: 90  NSRISFESYFDQIIRKS------GDFDYRKITTKHIRSG----VESRKHTPSSAIQFLTS 139
           ++   +E+ +  +           D  ++++T   I         ++  T ++   ++  
Sbjct: 136 STLNKYENVYTHLSEFIQYKYRRSDISFKELTEDFINDFDFYLRVNKSLTHNTIWVYMMP 195

Query: 140 MRVLFKWAVRQEYVAINPCLS-VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEF 198
           +  + + A+ +  +  NP  + +   + K  G     +E+++    +  + +   L  + 
Sbjct: 196 LCKMVEIAIDKGIIYRNPFKNYISSMEEKDRGY--LLREEVETLLQYHPKSASVELVRDL 253

Query: 199 LLY---SGLRCSDSCRAGVQHL-----QNNIFSIKTQKTGTIITVELPDGFMKLLAM--T 248
            ++   +G    D  +    HL      N     + QK+     V L D   K++     
Sbjct: 254 FVFSCFTGFSYIDIKQLKKSHLQSFFDGNKWLIKRRQKSDVPCNVRLLDIAEKIIEKYEG 313

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV----NKSAHGVRKFSATISADAGATA 304
               E  F        +    ++  K       +      S H  R    T+    G   
Sbjct: 314 TTRTEALFPT-----PSNANCNLLIKKMMKDCNIIREKPISFHWARHTFGTLFLTEGVPL 368

Query: 305 HELMATYGWKTVDQAETYTKGADRI--RLGIKNSRRISSVV 343
             +    G K +   + Y K  +    +     + R+ ++ 
Sbjct: 369 ESVSKMMGHKNIKTTQIYAKITNEKISKDMEIAAERLKNLK 409


>gi|198282467|ref|YP_002218788.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|198282806|ref|YP_002219127.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|198284131|ref|YP_002220452.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218665325|ref|YP_002426785.1| site-specific recombinase, phage integrase family
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|218666072|ref|YP_002425002.1| site-specific recombinase, phage integrase family
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|218667691|ref|YP_002425322.1| site-specific recombinase, phage integrase family
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198246988|gb|ACH82581.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|198247327|gb|ACH82920.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|198248652|gb|ACH84245.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218517538|gb|ACK78124.1| site-specific recombinase, phage integrase family
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|218518285|gb|ACK78871.1| site-specific recombinase, phage integrase family
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|218519904|gb|ACK80490.1| site-specific recombinase, phage integrase family
           [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 313

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 41/290 (14%), Positives = 81/290 (27%), Gaps = 42/290 (14%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
           L  LIS Y            +    +       R  GD     I    +   +  +    
Sbjct: 3   LSELISLYIAHKRALGYRFLTE---DHLLRSFCRAVGDRPIETIGADAVSIFLNGKGSVT 59

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP--WTKEDMQQFKSFWSE 188
           +   +    +   +++A+ +  V   P      PK+      P  ++  ++++       
Sbjct: 60  AYWYKKYHVLTGCYRFALARGMVTAIPLPR-SVPKQDGPIFVPYIYSHAELKRLIDVLPA 118

Query: 189 GSQPR---------LAFEFLLYSGLRCSDSCRAGVQHLQNN--IFSIKTQKTGTIITVEL 237
               R              +  +GLR S++    +  +     I  ++  K      V L
Sbjct: 119 LCAGRSRIDDYVFKALLLLMYGAGLRISEALSLHIHDVDLQQTILYVRETKFYKTRIVPL 178

Query: 238 PDGFMKLL---------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---- 284
                ++L           +      FF   D   ++ +     F+    KA V K    
Sbjct: 179 GKDLTQILNEYIAKRNNRYSAATDAPFFCFRDGTPLSRSAAHGLFRRVRAKADVLKEGGP 238

Query: 285 ----SAHGVRKFSATI----SADAGATAHE----LMATYGWKTVDQAETY 322
                 H +R  +A          GA   +    L    G   +   + Y
Sbjct: 239 RHQPRLHDLRHSAAVHRLIAWYRCGADLRDLLPKLATYLGHVDLSATQRY 288


>gi|168213070|ref|ZP_02638695.1| putative phage integrase family protein [Clostridium perfringens
           CPE str. F4969]
 gi|170715383|gb|EDT27565.1| putative phage integrase family protein [Clostridium perfringens
           CPE str. F4969]
          Length = 312

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 50/285 (17%), Positives = 101/285 (35%), Gaps = 23/285 (8%)

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS-GDFDYRKITT 116
           R+ I+   +   T K  + EY       +L  ++   +   +  I R    +   + +  
Sbjct: 2   RKKISCQTENLITFKEGVEEYLIDCKRRNLRKDTLRHYRESYKSITRIIDENIYIKDLNI 61

Query: 117 KHIRSGVESRKHTPSSAIQFLTS----MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
             +   V   K   +   Q L +    ++    + +RQEY+   P   ++ PK   + I 
Sbjct: 62  NSVGEFVVKCKEKFNINDQTLHTYTRDLKTWMYYWMRQEYI---PNFKIKLPKVDKKNIE 118

Query: 173 PWTKEDMQQFKSFWSEGS------QPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSI 224
           P+T E++++        +      +  +   F+L +GLR +      V+ +   N +  +
Sbjct: 119 PYTDEELKKLLKKPDLKTCRFGEYRNWVLVNFILSTGLRLNSFVNIKVKDIDFDNEVVFV 178

Query: 225 KTQKTGTIITVELP----DGFMKLLAMTPIGKE--TFFINNDKQKMNATQFSIWFKAKAT 278
              K    + + L         + L +    KE    F N+   +++    +    +   
Sbjct: 179 NMTKNRKPLIIPLNNIIIKILREYLRIRKPDKEDDYLFCNDYGIQLSKCTINASLSSYNK 238

Query: 279 KAGVNKS-AHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           K G+NK+  H  R   A      G     L    G   +   E Y
Sbjct: 239 KRGINKTGIHRYRHTFAKKWIMNGGNVVTLQKILGHSNLQITENY 283


>gi|161615645|ref|YP_001589610.1| hypothetical protein SPAB_03429 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|161365009|gb|ABX68777.1| hypothetical protein SPAB_03429 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 398

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 54/340 (15%), Positives = 113/340 (33%), Gaps = 35/340 (10%)

Query: 19  GKIIYYFRK-----------GHGRRIRLPYPHESTFIPAYMSALT-GSTPKREYINSPRK 66
           GK ++ FR            G G    L           Y++ L  G  P+ +   +  +
Sbjct: 39  GKKLWRFRYQRPATKQRTMMGLGAFPALSLADARGIRADYLALLANGIDPQIQAEVAEEQ 98

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNS------RISFESYFDQIIRKSGDFDYRKITTKHIR 120
           +   L  + S    +A+W  L   S      +  +      +    G+   ++I  + + 
Sbjct: 99  QQIALDSIFST--VAANWFQLKSKSVTPDYAKDIWRPLEKDVFPAIGEIPVQQIKARTLI 156

Query: 121 SGVESRKHTPS--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP--KRKTEGIRPWTK 176
             +E  K   +  +  + +  +  +  +AV    +  NP   +     K K + +     
Sbjct: 157 EALEPIKARGALETVRRLVQRINEIMIYAVNTGLIDANPASGIGMAFEKPKKQNMPTLRP 216

Query: 177 EDMQQFKSFW--SEGSQPRLAF-EFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKT 229
           E++ +       S  S     F E+ L + +R S++  A    +  +           K 
Sbjct: 217 EELPKLMHSLVMSNLSVSTCCFIEWQLLTLVRPSEASGARWAEIDLDTKLWTIPAERMKA 276

Query: 230 GTIITVELPDGFMKLLAMTP---IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA 286
                V L    +++L +       +E  F + +  K      +     K    G    A
Sbjct: 277 KREHIVLLSPQALEILDVMKPISAHREHVFPSRNDPKQAMNSQTANAALKRIGFGGKLVA 336

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAET-YTKG 325
           HG+R  ++T   +AG +   + A       ++    Y + 
Sbjct: 337 HGLRSIASTAMNEAGFSPDIIEAALAHSDKNEVRRAYNRS 376


>gi|124008731|ref|ZP_01693421.1| transposase, putative [Microscilla marina ATCC 23134]
 gi|123985807|gb|EAY25680.1| transposase, putative [Microscilla marina ATCC 23134]
          Length = 428

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 78/209 (37%), Gaps = 15/209 (7%)

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINP-CLSVERPKRKTEGIRPWTKEDMQQFKSFW---S 187
           +AI+ +   R     A++   +  NP     + PK +       T ++++Q         
Sbjct: 206 TAIKEVRHFRQAVNIAMQLGEIKTNPLIAKFKIPKDERPKRVILTLDELKQIMEVDLSDK 265

Query: 188 EG-SQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDGFM 242
            G  + R  F F  ++GL  SD      +HL    +      +  K+ T+  + L     
Sbjct: 266 RGMDRIRDCFVFQCFTGLAFSDIVDLKPEHLIEQGERTWIIKERVKSSTVAKMPLLPQAK 325

Query: 243 KLLAMTPIGKETFFINNDK--QKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISA 298
            +L       +   ++       + +  ++ + +  A   G++K  ++H  R+  AT+  
Sbjct: 326 FVLD--KYKDDPVCLSKGVLIPVITSGNYNTYLRMIAECVGIDKHLTSHVGRRTFATLVY 383

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGAD 327
           +AG    +L    G       E Y   A+
Sbjct: 384 NAGTDRSKLKEMTGHTNEAITEIYASLAN 412


>gi|77734435|emb|CAJ26219.1| integerase-recombinase [Thermotoga sp. RQ7]
          Length = 190

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/197 (17%), Positives = 66/197 (33%), Gaps = 25/197 (12%)

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAI-----NPCLSVERPKRKTEGIRPWTKEDMQQ 181
           K+ P++    L  ++    W   +  +       N       P R T   +    +++++
Sbjct: 9   KNAPATQRNKLVVVKNYLNWRADRGLLNXEERFWNEAE----PPRHTVLPKAIELDEVRR 64

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN---IFSIKTQKTGTIITVELP 238
                      R  F+ L  +G+R S+     V  +  N      IK +     I + + 
Sbjct: 65  IIEACDNXLY-RAIFKVLANTGMRVSEIVNLSVHDISVNETARIRIKGKGNKERI-INVS 122

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATI 296
              ++ L         FF     +K +        K  A KAG+ K  + H  R   A  
Sbjct: 123 KELVEELM-----NSGFFE----KKPSVRSIQRAVKRYARKAGIKKKVTPHIFRHSFAVA 173

Query: 297 SADAGATAHELMATYGW 313
             + G   +++ A  G 
Sbjct: 174 LIERGVPLNKIQALLGH 190


>gi|329769602|ref|ZP_08261006.1| hypothetical protein HMPREF0433_00770 [Gemella sanguinis M325]
 gi|328838357|gb|EGF87966.1| hypothetical protein HMPREF0433_00770 [Gemella sanguinis M325]
          Length = 301

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/271 (13%), Positives = 100/271 (36%), Gaps = 26/271 (9%)

Query: 85  GSLAVNSRISFESYFDQI---IRKSG-DFD-----YRKITTKHIRSGVESRKHTPSSAIQ 135
              + N+  S+E    ++   +  +G D D       ++   +    +   K++ ++  +
Sbjct: 17  KHFSSNTVNSYERDLRKLFIYLDSNGYDCDDIRSWLTEVCINNYMEYLRDNKYSAATLAR 76

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS---QP 192
            ++++ V  ++   +  +   P + ++  K     +  +T++++ Q     +      + 
Sbjct: 77  TVSTVHVYSEYLFDKNIIKDKPQIDIKITKDAEHDLVIFTRDEIAQILDIDTLTLNDFRD 136

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL-----------PDGF 241
           +  FE     G++ ++     ++ +   I  IK +K     TV L            D  
Sbjct: 137 KAIFELSYSIGIKPTECINLEMKDVNLEIGYIKYRKQDGYRTVALNTESIEAIRNYLDAL 196

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHG--VRKFSATISAD 299
            K   +    +   F+N+D + ++   +   FK +  +  + K  +    R   A    +
Sbjct: 197 KKH-KVPISEESKLFLNHDGEGISRQGYWKIFKKRQKELELTKELNTMNFRNSLAVHLLE 255

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIR 330
                 ++    G K +   ++Y K   + +
Sbjct: 256 DNVPIQDVQEILGLKNIHSLKSYIKSLKKTK 286


>gi|323967878|gb|EGB63290.1| phage integrase [Escherichia coli M863]
          Length = 401

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 45/309 (14%), Positives = 99/309 (32%), Gaps = 17/309 (5%)

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYR 112
              ++E          + K +  ++  +      + +      S  ++ +    G     
Sbjct: 88  EEARKEKAIDALNMAASFKTVAEDWLTT-RVSGWSESYTKQVRSALEKDVYPVLGKRSIV 146

Query: 113 KITTKHIRSGVESRKHT-PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE-RPKRKTEG 170
            IT + + + ++ ++ T P  A +    +  +FK+AV  E V  NP   ++   K +  G
Sbjct: 147 DITARDVLALLQKKERTAPEQARKLRQRIGEIFKFAVITELVNRNPVADLDTALKARRPG 206

Query: 171 IRPWTK-EDMQQFKSFWSEGS--QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-- 225
              W +  ++  F          Q + A   L+ + LR ++      + +     +I   
Sbjct: 207 HNAWLQINEISPFYKALERAGSVQIQTAIRLLILTALRTAELRLMRWEWVDLESATITLP 266

Query: 226 --TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
               K      V L    ++LL                + M+    +        + G  
Sbjct: 267 AEVMKARRPHVVPLSRQAVELLQDQFTRSGYSAFVFPGRFMDKPLSASAILKALERIGYK 326

Query: 284 --KSAHGVRKFSATISADAGA-TAHELMATYGWKTVDQAETYTKGA---DRIRLGIKNSR 337
              + HG R   +T   ++G  +   +              Y + A    R  +    + 
Sbjct: 327 SIATGHGWRTTFSTALNESGRYSPDWIEIQLAHVPKGVRGVYNQAAYLKQRRAMMQDYAD 386

Query: 338 RISSVVDSD 346
            I S++  D
Sbjct: 387 AIDSILAGD 395


>gi|187476897|ref|YP_784921.1| integrase [Bordetella avium 197N]
 gi|115421483|emb|CAJ47992.1| integrase [Bordetella avium 197N]
          Length = 344

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 43/347 (12%), Positives = 112/347 (32%), Gaps = 44/347 (12%)

Query: 12  TKERTRHGKIIYYF---RKGHGRR-IRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK 67
              R + GK++ Y+   R+  G + I L   ++S       + ++   P+          
Sbjct: 11  HTRRRKGGKVVTYYFFDRRAAGEKDIPLGTDYDSALEK--WAEISKGGPRI--------- 59

Query: 68  PTTLKWLISEYRKS-----AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122
             TL+     +          + +    +   +     ++    G   +  +   H+   
Sbjct: 60  AGTLEQAFQAWEADKVTGLGSYTNAD--TLRDYTRALRKLRPVFGTATWEAVEFTHLTIY 117

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAIN-PCLSVERPKRKTEGIRPWTKEDMQQ 181
           +  R    + A + + +++V++ WA ++    +N P   +E+ + + +      +   + 
Sbjct: 118 LRKRTAK-TRANREIATLQVIWNWARKEGMHNVNWPAAGMEKSRWRNKEKARDFEVSDEL 176

Query: 182 FKSFWSEGSQ-PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV----- 235
           F++ +  G    R   +    +G+R  D+        + +I  +++ KTG          
Sbjct: 177 FEAIYYAGDDLLRDCMDVASATGMRIKDTINV--MMPEGDILRLQSSKTGKKADFDVSLS 234

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHG------- 288
            +    ++                  + +        ++     A +N  A G       
Sbjct: 235 AVLPDLIRRRRKVKATHSMLLTTPTGRVVTYAMLRARWEFAREYAAINAEAAGEQSLADD 294

Query: 289 VRKFSATISA----DAGATAHELMATYGWKTVD-QAETYTKGADRIR 330
           +R            +  AT  E        +V    + Y   A +++
Sbjct: 295 LRAMFLRDMRRYASNIAATDEEASQLLQHSSVSLTRKHYRTKATQLK 341


>gi|126441693|ref|YP_001060503.1| integrase [Burkholderia pseudomallei 668]
 gi|126221186|gb|ABN84692.1| integrase [Burkholderia pseudomallei 668]
          Length = 571

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 39/271 (14%), Positives = 84/271 (30%), Gaps = 36/271 (13%)

Query: 99  FDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMR---VLFKWAVRQEYV-- 153
            D             +      +  + R      A + L + R        A+R E +  
Sbjct: 223 IDTWRIHVAKNPMDGVRRPRYYNERDRRLKDGEEA-RLLAAAREEDRAQSIALRLELLMA 281

Query: 154 ----AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDS 209
                 N   +V R K+  +G R   + + ++         +  + F+ +  +G R S++
Sbjct: 282 PEREDANSATTVYRRKQVIKGARQRYQAEAEETYEHIPL-LETFIHFQLM--TGARRSET 338

Query: 210 CRAGVQHLQNNIFS--IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT 267
                 ++  +  +  +   K G   T+ L    ++LL   P   E  F       +   
Sbjct: 339 LTLTWSNVDLDGQAAFLPETKNGRPRTLPLRSDLVELLRQLPRTGELVF------PIGVD 392

Query: 268 QFSIWFKAKATKAGVNK----SAHGVRKFSATISADAGA------TAHELMATYGWKTVD 317
                ++     AG+        H +R  + +  A+AG+      +  +L    G +   
Sbjct: 393 GLRKAWQRICMAAGLAGGAEVRIHDLRHEAISRVAEAGSRTPGGFSLVDLQHFSGHRDTR 452

Query: 318 QAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
               Y             ++R+      + P
Sbjct: 453 MLLRYAHLC-----AGSFAKRLDEAFRVNSP 478


>gi|226950013|ref|YP_002805104.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum A2 str. Kyoto]
 gi|226844233|gb|ACO86899.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum A2 str. Kyoto]
          Length = 310

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 47/295 (15%), Positives = 106/295 (35%), Gaps = 28/295 (9%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG-DFDYRKITTKHIRSGVES--R 126
           T K L  EY         +V +  ++   F+  ++  G DF    IT K I +  +   +
Sbjct: 12  TFKELKEEYILYLQLNKRSVWTIKTYTEKFNSFLKFIGNDFLCADITEKVIENYKKELLK 71

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            +  +S    LT +R +F +A ++ Y+     + + + + + +    ++KE++++     
Sbjct: 72  TNRETSVNTHLTHLRTIFNFASKRGYMQN---VKINKLESQEKIKNVYSKEELERLLLEE 128

Query: 187 SEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDG 240
              +    Q R+     + +GLR S+     ++ +   N++   +  KT     + +   
Sbjct: 129 PRETFMQYQARVIIATFVSTGLRLSELTSLQIRDVDFHNSVIYSRHTKTKKSRILPISTS 188

Query: 241 FMKLL------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFS 293
              +L            K+  F N+  + +                 V     H  R+  
Sbjct: 189 LRSMLVEWISYRQAENEKDGLFCNSYGKTLKQATLRTLMYRYFDHKNVKSGGIHQFRRTF 248

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
            T +   G     L    G + +     Y          + ++ R+ ++ D+  P
Sbjct: 249 ITYAVQQGVDIISLSRITGHQNLKILNKY---------YVNSTERVKNLADTVSP 294


  Database: nr
    Posted date:  May 13, 2011  4:10 AM
  Number of letters in database: 999,999,932
  Number of sequences in database:  2,987,209
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 13, 2011  4:17 AM
  Number of letters in database: 999,998,956
  Number of sequences in database:  2,896,973
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 13, 2011  4:23 AM
  Number of letters in database: 999,999,979
  Number of sequences in database:  2,907,862
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 13, 2011  4:29 AM
  Number of letters in database: 999,999,513
  Number of sequences in database:  2,932,190
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 13, 2011  4:33 AM
  Number of letters in database: 792,586,372
  Number of sequences in database:  2,260,650
  
Lambda     K      H
   0.309    0.137    0.376 

Lambda     K      H
   0.267   0.0416    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,883,804,985
Number of Sequences: 13984884
Number of extensions: 220085574
Number of successful extensions: 684657
Number of sequences better than 10.0: 10000
Number of HSP's better than 10.0 without gapping: 13394
Number of HSP's successfully gapped in prelim test: 10542
Number of HSP's that attempted gapping in prelim test: 639745
Number of HSP's gapped (non-prelim): 26692
length of query: 348
length of database: 4,792,584,752
effective HSP length: 140
effective length of query: 208
effective length of database: 2,834,700,992
effective search space: 589617806336
effective search space used: 589617806336
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.2 bits)
S2: 81 (35.8 bits)